BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780747|ref|YP_003065160.1| putative protease IV
transmembrane protein [Candidatus Liberibacter asiaticus str. psy62]
         (293 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780747|ref|YP_003065160.1| putative protease IV transmembrane protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040424|gb|ACT57220.1| putative protease IV transmembrane protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 293

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 293/293 (100%), Positives = 293/293 (100%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI
Sbjct: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
           SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI
Sbjct: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD
Sbjct: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL
Sbjct: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
           GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP
Sbjct: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293


>gi|315121910|ref|YP_004062399.1| putative protease IV transmembrane protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495312|gb|ADR51911.1| putative protease IV transmembrane protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 295

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 157/290 (54%), Positives = 219/290 (75%), Gaps = 2/290 (0%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-QELIERIERISRDD 64
           K IK R+++  L+ L + YF+W S   D +PHVARI I G I D  ++L++RI R+  DD
Sbjct: 6   KNIKKRHIVYLLIALGITYFAWDSIFPDRTPHVARITISGSIGDDNEDLLDRIHRVGTDD 65

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
           SA AL++ +SSPGG+ Y  E++F A++KVK RKPV+T V  +AAS GYLISCASN I+A+
Sbjct: 66  SAKALVLWISSPGGTVYGSESLFEAVKKVKLRKPVVTLVGGVAASGGYLISCASNAIIAS 125

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
           ++S++GSIGV   YP  KPFLDKLG+S++++KSSP+K EPSP+S+ NP+ +Q ++++V+ 
Sbjct: 126 QSSIIGSIGVFLSYPQFKPFLDKLGISVETIKSSPLKGEPSPYSKPNPQTIQNLKELVND 185

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            YHWFV+LVSE R+IPYDK L LS G +W+G +AKK+GLID +GG +EVW+SLY+LGVD+
Sbjct: 186 EYHWFVKLVSEERHIPYDKALTLSSGLVWSGTKAKKLGLIDAIGGNDEVWKSLYSLGVDK 245

Query: 245 SIRKIKDWNPPKNYWFCDLKNLS-ISSLLEDTIPLMKQTKVQGLWAVWNP 293
            ++ IKDW  PKNYWF D      + S LED++P ++Q   +GL AVW P
Sbjct: 246 DVKIIKDWKSPKNYWFFDFNFKKYVKSTLEDSVPFIRQANFEGLLAVWRP 295


>gi|206889350|ref|YP_002249562.1| signal peptide peptidase SppA, 36K type [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741288|gb|ACI20345.1| signal peptide peptidase SppA, 36K type [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 285

 Score =  177 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/288 (28%), Positives = 153/288 (53%), Gaps = 10/288 (3%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDS 65
           KK+K  ++++  + L     +        +  VA + I+G I DS+  I+ I++  +D S
Sbjct: 4   KKLKFFFIIIGTLILISFLITIMES-SLTAGKVAIVNIKGIIVDSKPSIDEIKQYRKDPS 62

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
             A+++ + SPGG+    + I+  I++    KPV+  +  +AAS GY ISC +  I+A  
Sbjct: 63  IKAIVLRVDSPGGAVVPSQEIYEEIKRTIKSKPVVVSMGSIAASGGYYISCPATKIIANP 122

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
            +L GSIGVL + P +K  LDK+GV  + +KS   K   SPF  +  +  +++Q + +  
Sbjct: 123 GTLTGSIGVLIEIPNIKGLLDKIGVKAEVIKSGKYKDITSPFKPLQNEEKEILQKLTNDV 182

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           +  F++ V+E R +P +    ++DGR++TG +AK++GL+D +G  +   +    L   + 
Sbjct: 183 HEQFIKAVAEGRKVPVEDIKKIADGRVFTGLKAKELGLVDEIGDLDYAIKIAAQLAKIKG 242

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
             +I      K+    D    +  SL++  +P M+      ++ +++P
Sbjct: 243 EPEIVT---KKSTLLIDFLKGNTESLVKKILPYMQ------VYYLYSP 281


>gi|153005152|ref|YP_001379477.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter sp.
           Fw109-5]
 gi|152028725|gb|ABS26493.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter sp.
           Fw109-5]
          Length = 366

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 126/262 (48%), Gaps = 6/262 (2%)

Query: 11  RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI------EDSQELIERIERISRDD 64
             V    + L               P VA I ++G I       D+  +++++ ++++DD
Sbjct: 75  FLVFFGFLVLAYSVVKGEGPAIATGPRVAIIEVKGPIGTGAGGADADRILKQLRKVAQDD 134

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
              A++V + SPGG+    + +   ++K+  +K V+  +  +AAS G+ ++ A   +VA 
Sbjct: 135 GLKAVVVRIDSPGGAVAPSQELHDEVKKLAQKKTVVCSMGNLAASGGFYVAVACPKVVAE 194

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             +L GSIGV+ Q+P VK  L++  V +++VKS  +K   +PF++++ +     Q ++D 
Sbjct: 195 PGTLTGSIGVITQFPKVKGLLERWDVKMETVKSGALKDAGNPFADMSAEERAYWQSLIDR 254

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            Y  FVR V++ R +        +DGR+ TG EAK++ L+D +G   +  +         
Sbjct: 255 VYGQFVRAVAQGRGLEEAAVRKFADGRVITGEEAKELKLVDALGNFYDAVELAKQEAKLS 314

Query: 245 SIRKIKDWNPPKNYWFCDLKNL 266
               +      +  +   L   
Sbjct: 315 GEPHLVYPADERGRFLEQLMGS 336


>gi|300023831|ref|YP_003756442.1| signal peptide peptidase SppA, 36K type [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525652|gb|ADJ24121.1| signal peptide peptidase SppA, 36K type [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 321

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 147/299 (49%), Gaps = 13/299 (4%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVE-DNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66
            +   +   L+ +  +               +ARI I G I + ++ ++ ++ I+ D S 
Sbjct: 20  WRAAGLAAVLIAIGALTLGGDKLATLAGEKQIARITIEGTISEDRDQLKMLKDIAEDSSV 79

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
             +++ ++SPGG+   GEA++  ++ +  +KP++ +   +AASA Y+   A++ IVA   
Sbjct: 80  AGVLMYVNSPGGTTTGGEALYEGLRALAAKKPIVAQFGTVAASAAYIAGIATDHIVARGN 139

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           S+ GS+GV+ Q+P     LDK+GV +  VKS  +KA PSPF  +     Q+ Q +V+  +
Sbjct: 140 SITGSVGVIVQWPEFVQLLDKVGVKVNEVKSGVLKASPSPFEPLTEGGKQVAQGMVNDGF 199

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
            WFV LV   R +       L DGR+++G EA +  L+D +GG+EE  + L         
Sbjct: 200 KWFVGLVETRRGVKAADIPGLLDGRVFSGREALQAKLVDQIGGEEEAVKWLKDEKNVPQS 259

Query: 247 RKIKDWNP--PKNYWFCDLKNLSISSLLEDTIP----------LMKQTKVQGLWAVWNP 293
            K+ DW P  P +Y F  +       LL  +                  + GL ++W+P
Sbjct: 260 AKLVDWKPSTPNSYGFAGMSGQIAGFLLGSSAGDLVNFLSRERSFSTLGLDGLLSLWHP 318


>gi|114328685|ref|YP_745842.1| signal peptide peptidase sppA [Granulibacter bethesdensis CGDNIH1]
 gi|114316859|gb|ABI62919.1| signal peptide peptidase sppA [Granulibacter bethesdensis CGDNIH1]
          Length = 347

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 88/268 (32%), Positives = 148/268 (55%), Gaps = 6/268 (2%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           SH   + PH+ RI I G I   + L+E I   + D S  A+++ ++SPGG+   GEA+  
Sbjct: 81  SHAVVSGPHLTRIRISGIITYDRPLLEAISHAADDSSVKAVLLEINSPGGTVAGGEALHD 140

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
           A+ ++  RKP++T +  +AASAGY+I+  S  I A + +L GSIGVL Q   +   L KL
Sbjct: 141 ALAQLAARKPLVTTMESVAASAGYMIAAPSARIFARQATLTGSIGVLMQSAELSGLLGKL 200

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           GV   ++ S PMK +PS  + ++P+  QM+Q +V+  Y  FV +V++ R++  +    L+
Sbjct: 201 GVGSNTIVSGPMKDQPSLTAPLSPEGRQMLQGIVNDMYDQFVTMVAQGRHMTPEHVRALA 260

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP---KNYWFCDLKN 265
           DGR +TG +A  +GL+D +GG+ +    L           ++  +     + +WF     
Sbjct: 261 DGRPYTGRQALALGLVDQIGGEHDARVWLAKERHVPEDLPVRPLHESDGLRKHWFGGWLG 320

Query: 266 LSISSLLEDTIPLMKQTKVQGLWAVWNP 293
            S+ + +E  +   +   + G WA+W P
Sbjct: 321 -SLENFVESKLS--QGVSIDGAWALWQP 345


>gi|225849223|ref|YP_002729387.1| signal peptide peptidase SppA, 36K type [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643770|gb|ACN98820.1| signal peptide peptidase SppA, 36K type [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 276

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/253 (32%), Positives = 141/253 (55%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVS 72
           V++ LV + +V++  SS  E + P VA I +   I D  E +  I +  +D+S  A++++
Sbjct: 5   VLIGLVAIFIVFYIISSLKETSKPKVALIRVNDTIMDHMETVSNIAQAEKDESIKAVVIA 64

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           + SPGG+  A + I+RAI+K++ +KPV+  +  +AAS GY IS  +N+I A   ++ GSI
Sbjct: 65  VDSPGGAVGASQEIYRAIEKLREKKPVVVSMGNVAASGGYYISAPANVIYANPGTITGSI 124

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GV+ Q   +   L+K+GV + +VKS   K    P   + P+  Q+++  V   Y  F+  
Sbjct: 125 GVIIQQVDLSEVLNKIGVKVNTVKSGENKDILYPTKPLTPEQKQILEKTVMDVYDQFLDA 184

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           + + R I  +     +DGR+++G EA+K+GLID +G  ++  +    LG       + + 
Sbjct: 185 IVKYRPIKKEVLKTYADGRVFSGREAQKIGLIDKLGNIQDAVKEAKKLGKLPEDAPVIEI 244

Query: 253 NPPKNYWFCDLKN 265
            PPK      LK+
Sbjct: 245 KPPKPLLEELLKS 257


>gi|15887687|ref|NP_353368.1| proteinase IV [Agrobacterium tumefaciens str. C58]
 gi|15155244|gb|AAK86153.1| proteinase IV [Agrobacterium tumefaciens str. C58]
          Length = 317

 Score =  169 bits (426), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 119/292 (40%), Positives = 180/292 (61%), Gaps = 9/292 (3%)

Query: 10  TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATAL 69
              ++L +    +  F W    +   PH+ARI + G I D+ EL+ER+++I++ D+   L
Sbjct: 22  AAVLLLVVGAFGLYRFFWQGPQQSAKPHIARIEVSGLITDNTELLERLDKIAKSDNVKGL 81

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           IVS+SSPGG+ Y GE IF+ I+ V  +KPV+++V  +AASAGY+I+ A ++IVA ETS+ 
Sbjct: 82  IVSISSPGGTTYGGERIFKVIRSVAEKKPVVSDVRTLAASAGYMIASAGDVIVAGETSIT 141

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+FQYP +   ++KLGVS++ +KSSPMKAEPSPF E   +A  M++ +V  SY WF
Sbjct: 142 GSIGVIFQYPQLGQLMEKLGVSLQEIKSSPMKAEPSPFHEAPEEAKTMIRAMVMDSYGWF 201

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V LV++ R +P ++ L L+DG I+TG +A    L+D +GG++EV       GV + +  +
Sbjct: 202 VDLVADRRKLPREEVLKLADGSIFTGRQALANKLVDTLGGEKEVRAYFETRGVAKDLPIV 261

Query: 250 KDWNPPKNYWFCDLKNLSISSLL--EDTIPL-------MKQTKVQGLWAVWN 292
           +   P  N  F       I+ LL  +D IP          +  + GL +VW 
Sbjct: 262 EWRAPSSNSPFALFSVAQIAKLLGYDDLIPFAGPSQLGADKLFLDGLVSVWQ 313


>gi|20807332|ref|NP_622503.1| periplasmic serine protease (ClpP class) [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515846|gb|AAM24107.1| Periplasmic serine proteases (ClpP class) [Thermoanaerobacter
           tengcongensis MB4]
          Length = 305

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 87/294 (29%), Positives = 148/294 (50%), Gaps = 13/294 (4%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL----------IERI 57
           I      + L +L +   S  S    +S  +  + I G I D   +          +E+I
Sbjct: 11  ILALVFAIVLASLFLTQPSTESQKTVSSNTIGVVTIEGVIGDFSNILGIPQFTPDPVEQI 70

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISC 116
            R   D++  A++V ++SPGGSA     I+  ++++K   K VI  + + AAS GY+ +C
Sbjct: 71  RRAQEDNTVKAIVVKINSPGGSAAKSVEIYTELKRLKETGKKVIVSMGDAAASGGYMAAC 130

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
             +IIVA   ++ GSIGV+ QY   +   DKLG+   ++KS P K   SP  ++ P+  +
Sbjct: 131 GGDIIVANPATITGSIGVIMQYTNYEGLYDKLGLKEITIKSGPYKDMGSPTRDLTPEEKK 190

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           ++Q ++D +Y  FV +VSE R +P +K   L+DGRI+TG +A KVGL+D +G   +    
Sbjct: 191 ILQGIIDDTYEQFVEIVSEGRKMPIEKVKELADGRIFTGRQALKVGLVDKLGDFYDAVDI 250

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
                  Q    +K +  P N         + S+L    + +++   +   W++
Sbjct: 251 AAKEAGIQGKPVLKYYTTP-NPLSILFGGGAKSNLEGTGLEILRLLFIDK-WSL 302


>gi|153007511|ref|YP_001368726.1| signal peptide peptidase SppA [Ochrobactrum anthropi ATCC 49188]
 gi|151559399|gb|ABS12897.1| signal peptide peptidase SppA, 36K type [Ochrobactrum anthropi ATCC
           49188]
          Length = 323

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 106/296 (35%), Positives = 187/296 (63%), Gaps = 12/296 (4%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSAT 67
            +  +++L    + V           N PH+A++ I G I +++EL++R+++I++DD+  
Sbjct: 21  WRGAFLLLIAALIAVFASWSMRGTNFNQPHIAKVRIEGTIFENEELLKRLDKIAKDDAVK 80

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
            +I+ L SPGG+   GEAIF A++K+  +KPV+T+V  +AASAGY+I+ AS+ IVA +TS
Sbjct: 81  GVILVLDSPGGTTVGGEAIFEAVRKIAEKKPVVTQVGTLAASAGYMIASASDHIVARQTS 140

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           +VGSIGVLFQYP V   LD +GV ++++KSSP+KAEP+ FS  + +A  M+++++  SY 
Sbjct: 141 IVGSIGVLFQYPDVSKLLDTIGVKVETIKSSPLKAEPNYFSPASEEAKGMIRNMIMDSYA 200

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           WFV +V + R+  +++ L L++G ++TG +A    LID +GG+EE    L + G+ + + 
Sbjct: 201 WFVDIVEKRRSFTHEQALALANGAVFTGRQALDKKLIDGLGGEEEAVAWLASKGLSKDLP 260

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292
           ++ +W P  +     L++L I +        ++   ++     ++  + GL +VW+
Sbjct: 261 RL-EWKPVSSETGFSLRDLIIHAGARLLRVPQEADGMLKQIAKERIFLDGLLSVWH 315


>gi|222055988|ref|YP_002538350.1| signal peptide peptidase SppA, 36K type [Geobacter sp. FRC-32]
 gi|221565277|gb|ACM21249.1| signal peptide peptidase SppA, 36K type [Geobacter sp. FRC-32]
          Length = 298

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 67/273 (24%), Positives = 143/273 (52%), Gaps = 10/273 (3%)

Query: 9   KTRYVMLSLVTLTVVYFSWS----------SHVEDNSPHVARIAIRGQIEDSQELIERIE 58
           K   ++L +V +TV++  ++          +    +   V  + ++G I D QE +++++
Sbjct: 4   KWLIIVLIVVAVTVLFSVFTISVMKSVFSDTEEAIHGEGVGLVEVKGIILDPQETVKQLQ 63

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118
            + +++   A+++ + SPGG     + I  A++K+  +K V+  +  +AAS GY I+  +
Sbjct: 64  ALRKNEKVKAVVLRIDSPGGVVGPSQEIHDAVKKLNMKKKVVVSMGSLAASGGYYIAVPA 123

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
             I A   ++ GSIGVL ++  ++  +DK+G+   ++K+   K   SP   +  +  +M+
Sbjct: 124 TKIFANPGTITGSIGVLMKFSNIEGLMDKVGMKAFTLKTGKFKDVGSPARTMTDQEKEML 183

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           Q V+DS++  F++ V+E R +P ++   L++GRI++G +A  + LID +G  ++  +   
Sbjct: 184 QSVIDSTHGQFIKAVAEGRKLPVEEVRSLANGRIYSGEQALALKLIDQLGTLQDAVEEAG 243

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
            LG  +   +I      K  +   L   +   +
Sbjct: 244 RLGGIKGEPEIIRPPKKKKVFIDLLVESAAERI 276


>gi|86157946|ref|YP_464731.1| signal peptide peptidase A [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774457|gb|ABC81294.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 316

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 70/259 (27%), Positives = 129/259 (49%), Gaps = 6/259 (2%)

Query: 34  NSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           + P V  I ++G I         +++++RI R + D    A+++ + SPGGS  A + I 
Sbjct: 48  SGPRVGVIDVKGTIGGGPERDETEDILKRIRRFADDGDLKAVVIRVDSPGGSVGASQEIH 107

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             ++++  +K V+  +  +AAS G  +S A   IVA   +L GSIGV+ Q+P VK   +K
Sbjct: 108 DEVKRLAQKKVVVCSMGNLAASGGLYVSVACPKIVANPGTLTGSIGVISQFPNVKDLAEK 167

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
           LGV +++VK+  +K   +PF ++ P+     Q +V+++   FV+ V+E R +   K   +
Sbjct: 168 LGVKVETVKTGKLKDAGNPFRDMTPEDRAYWQGLVENTLGQFVKAVAEGRKLDEAKVRAI 227

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           +DGR+ TGA+AK+ GL+D +G   +  +             +         +   L   +
Sbjct: 228 ADGRVLTGAQAKEAGLVDQLGNFYDAVELAKQEAKLSGEPVLVYPPDEHGRFLEQLMGGA 287

Query: 268 ISSLLEDTIPLMKQTKVQG 286
             ++ +     + Q     
Sbjct: 288 AGAVADAVATRVAQGAADA 306


>gi|110635996|ref|YP_676204.1| signal peptide peptidase A [Mesorhizobium sp. BNC1]
 gi|110286980|gb|ABG65039.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49
           [Chelativorans sp. BNC1]
          Length = 322

 Score =  166 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 98/276 (35%), Positives = 165/276 (59%), Gaps = 13/276 (4%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
                  PH+A++ I G I + ++L++ +E +    +   +IV++ SPGG+   GEAI+ 
Sbjct: 42  GDTLAAGPHIAQVRIEGTILEDKDLLDVLEDVRESSAVQGVIVTVDSPGGTTAGGEAIYE 101

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
           AI+++   KPV+ +V  +AASAGY+++ A++ IVA +TS+VGSIGV+ QYP V   L KL
Sbjct: 102 AIRQLAEAKPVVAQVGTLAASAGYMVASAADHIVARQTSIVGSIGVIIQYPDVTDLLSKL 161

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           GV ++ VKSSP+KAEPSPF+    +  QM+  +++ SY+WFV L+S+ R +P ++ + L+
Sbjct: 162 GVKVEEVKSSPLKAEPSPFNPTTDQERQMLAGMINDSYNWFVDLISQRRKLPRNEVVALA 221

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY---------- 258
           DG I+TG +A +  L+D +GG++E    L       +   + +W P  +           
Sbjct: 222 DGSIFTGRQALERKLVDALGGEDEAQAWLVDQ-GLSAELNVVEWKPRSSSGSIFLPTSVA 280

Query: 259 -WFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
            W  +   L  +++L D +  M+   + GL ++W P
Sbjct: 281 AWLANALGLPQATMLLDRLG-MEHIFLDGLLSLWQP 315


>gi|169832316|ref|YP_001718298.1| signal peptide peptidase SppA, 36K type [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169639160|gb|ACA60666.1| signal peptide peptidase SppA, 36K type [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 299

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/281 (28%), Positives = 140/281 (49%), Gaps = 15/281 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVE-DNSPHVARIAIRGQIED-----------SQ 51
           +L  +    V+LSL+ + V+               +  I I G I             ++
Sbjct: 5   ILAGVILGVVVLSLILVAVLGSRTGPEGRRATGEQIGLIRIEGMIIGGTEGSFFGLGGAE 64

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASA 110
           E+  +I+  + + +  A+++ L+SPGGSA A + I  A+ +++   KPV+  + + +AS 
Sbjct: 65  EITAQIQEAADNPNIRAVVLRLNSPGGSAAASQEISEAVVRLREAGKPVVVSMGDTSASG 124

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
            Y I+C ++ IVA   ++ GSIGV+ Q  ++    D LG+  ++ KS P K   SP    
Sbjct: 125 AYWIACHADAIVANPATITGSIGVIIQTTHLTDLYDMLGIETETFKSGPHKDMGSPDRVP 184

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
            P+   + Q +VD  Y  FV +V+  RN+P D+   L+DGRI+TG +A ++GL+D +G  
Sbjct: 185 TPEERAIFQGMVDDIYAQFVAVVARGRNMPEDQVRKLADGRIFTGRQAYELGLVDQLGDL 244

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           ++  ++   LG       + +    +  +F D      S L
Sbjct: 245 QDAVRAAAELGGLDPDAPVVELG--RRPFFRDFWGGLSSLL 283


>gi|197122751|ref|YP_002134702.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter sp. K]
 gi|196172600|gb|ACG73573.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter sp. K]
          Length = 382

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 70/258 (27%), Positives = 129/258 (50%), Gaps = 5/258 (1%)

Query: 34  NSPHVARIAIRGQIEDSQ-----ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           + P V  I ++G I   +     ++++RI R + D    A+++ + SPGGS  A + I  
Sbjct: 115 SGPRVGVIDVKGTIGGGERDETEDILKRIRRFAEDGDLKAVVIRVDSPGGSVGASQEIHD 174

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
            ++++  +K V+  +  +AAS G  +S A   IVA   +L GSIGV+ Q+P VK   +KL
Sbjct: 175 EVKRLAQKKVVVCSMGNLAASGGLYVSVACPKIVANPGTLTGSIGVISQFPNVKDLAEKL 234

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           GV +++VK+  +K   +PF ++ P+     Q +V+++   FV+ V+E R +   K   ++
Sbjct: 235 GVKVETVKTGKLKDAGNPFRDMTPEDRAYWQGLVENTLGQFVKAVAEGRKLDEAKVRAIA 294

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
           DGR+ TGA+AK+ GL+D +G   +  +             +         +   L   + 
Sbjct: 295 DGRVLTGAQAKEAGLVDQLGNFYDAVELAKQEAKLSGEAVLVYPPDEHGRFLEQLMGGAA 354

Query: 269 SSLLEDTIPLMKQTKVQG 286
            ++ +     + Q     
Sbjct: 355 GAVADAVATRVAQGAADA 372


>gi|220917534|ref|YP_002492838.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955388|gb|ACL65772.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 382

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 70/258 (27%), Positives = 129/258 (50%), Gaps = 5/258 (1%)

Query: 34  NSPHVARIAIRGQIEDSQ-----ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           + P V  I ++G I   +     ++++RI R + D    A+++ + SPGGS  A + I  
Sbjct: 115 SGPRVGVIDVKGTIGGGERDETEDILKRIRRFAEDGDLKAVVIRVDSPGGSVGASQEIHD 174

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
            ++++  +K V+  +  +AAS G  +S A   IVA   +L GSIGV+ Q+P VK   +KL
Sbjct: 175 EVKRLAQKKVVVCSMGNLAASGGLYVSVACPKIVANPGTLTGSIGVISQFPNVKDLAEKL 234

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           GV +++VK+  +K   +PF ++ P+     Q +V+++   FV+ V+E R +   K   ++
Sbjct: 235 GVKVETVKTGKLKDAGNPFRDMTPEDRAYWQGLVENTLGQFVKAVAEGRKLDEAKVRAIA 294

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
           DGR+ TGA+AK+ GL+D +G   +  +             +         +   L   + 
Sbjct: 295 DGRVLTGAQAKEAGLVDQLGNFYDAVELAKQEAKLSGEAVLVYPPDEHGRFLEQLMGGAA 354

Query: 269 SSLLEDTIPLMKQTKVQG 286
            ++ +     + Q     
Sbjct: 355 GAVADAVATRVAQGAADA 372


>gi|220905589|ref|YP_002480901.1| signal peptide peptidase SppA, 36K type [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869888|gb|ACL50223.1| signal peptide peptidase SppA, 36K type [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 383

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 70/281 (24%), Positives = 136/281 (48%), Gaps = 1/281 (0%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVED-NSPHVARIAIRGQIEDSQELIERIERISRDDSA 66
           +    +++ L  L VV  S            +A +++ G I + +  +E +  ++R+ S 
Sbjct: 84  LFWAAIVIVLGALGVVAGSAGKDGGLMGGDRIALVSVTGPIMNVEPTLEWLRTVARNPSV 143

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
             ++V + SPGG A A + ++ A++ +  + PV   +  MAAS G ++S A   + A  +
Sbjct: 144 KGVLVRVDSPGGGAAASQEVYDALKNLAQKMPVAVSMGSMAASGGLMVSMAGQRVFANPS 203

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           ++ GSIGV    P ++  +DK+GV  +++     K   S    +  +     Q V+ + Y
Sbjct: 204 TVTGSIGVRMDVPQLQGLMDKVGVGQETLVVGQYKDAASYMRPMTAEQRAYFQGVLTNMY 263

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
             FV +V++ R +P D+ L L++G+++TG EA  +GL+D +GG+ +    L       + 
Sbjct: 264 DQFVDIVAQGRGMPRDRALKLANGKVYTGQEALGLGLVDELGGRGQALAWLAQKTGVPAE 323

Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           RK+             L+ +  + L  ++  L     + GL
Sbjct: 324 RKLLTRPREDGLLGRGLRVMLGAVLGPESDTLGGLASLAGL 364


>gi|291280462|ref|YP_003497297.1| signal peptide peptidase SppA [Deferribacter desulfuricans SSM1]
 gi|290755164|dbj|BAI81541.1| signal peptide peptidase SppA [Deferribacter desulfuricans SSM1]
          Length = 285

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 74/269 (27%), Positives = 139/269 (51%), Gaps = 2/269 (0%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63
           V+K + +  V++  +   V  FS  + +  N PH+  I + G I DS++++  + +   +
Sbjct: 7   VMKFLLSLIVIVIFIYFVVYLFSGKNEIVLNKPHIKVIKLEGIIVDSEKIVRELRKAEEN 66

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
           D    +I+ ++SPGG+    + I++AI+KV  +KPV   +  + AS GY ++ A + I  
Sbjct: 67  DFVKGVIIRINSPGGAVAPSQEIYKAIRKV--KKPVYAAISTLGASGGYYVAAACDKIYV 124

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
              S+ GSIGV+ ++   K   DK+GV  +S+KS   K   S   E++ +  +++Q  +D
Sbjct: 125 LGGSITGSIGVIMRFSNFKELYDKIGVKFESIKSGKFKDIGSSSREMSKEERELLQKAID 184

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
           + Y  FV  + ++R+I  D     +DGRI TG +A K+G +D +G   + ++ +      
Sbjct: 185 NVYKQFVNDILKTRHISKDIIKKYADGRILTGEQALKLGFVDKIGTYYDAFEDMKKDFHL 244

Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
                + +     +     L+ +S   LL
Sbjct: 245 GEDVVLYEVKDKNSLLKELLEGVSKVRLL 273


>gi|188996018|ref|YP_001930269.1| signal peptide peptidase SppA, 36K type [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931085|gb|ACD65715.1| signal peptide peptidase SppA, 36K type [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 274

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 73/253 (28%), Positives = 136/253 (53%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVS 72
           +++ ++ L V+++  S+   ++ P V  I I G I D  + +  I   ++D+S  A+++ 
Sbjct: 5   ILIGIIALIVIFYIISALRYESQPKVGLIRIEGTIVDYLDTVSIISEATKDESIKAVVID 64

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           + SPGG+  A + I+RAI+K++ +KPV+  +  +AAS GY IS  +N+I +   ++ GSI
Sbjct: 65  VDSPGGAVGASQEIYRAIEKLREKKPVVVSMGNVAASGGYYISTPANVIYSNPGTITGSI 124

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GV+ Q+  V   L+K GV + ++KS   K    P   + P+   +++  V   Y  F+  
Sbjct: 125 GVIIQHVDVSEILNKFGVKVNTIKSGANKDILYPTKPLLPEQKALLEKTVMDVYDQFLDA 184

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           ++  R I  D     +DGR+++G EAK +GL+D +G  ++       LG  +    + + 
Sbjct: 185 IARYRPIKKDVLKSYADGRVFSGNEAKALGLVDKIGNIQDAISEAKKLGKLEEDAPVIEL 244

Query: 253 NPPKNYWFCDLKN 265
            P K      + +
Sbjct: 245 KPKKPLLDELMNS 257


>gi|13472792|ref|NP_104359.1| protease IV [Mesorhizobium loti MAFF303099]
 gi|14023539|dbj|BAB50145.1| protease IV [Mesorhizobium loti MAFF303099]
          Length = 318

 Score =  165 bits (417), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 107/299 (35%), Positives = 167/299 (55%), Gaps = 14/299 (4%)

Query: 9   KTRYVMLSLVTLTVVYFSW----SSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64
             R   + +V L V+  S              H+A++ I G I + +ELI+R+E I +  
Sbjct: 20  FWRVAAIGIVALGVIALSAWFYRDDLGGSTVDHIAKVRIEGTITEDEELIKRLEDIRKSS 79

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
               +I+++ SPGG+   GE+I+  ++KV   KPV+ EV  +AASAGY+I+ A++ IVA 
Sbjct: 80  KVKGVILAIDSPGGTTVGGESIYEEVRKVAADKPVVAEVGTLAASAGYMIASAADHIVAR 139

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
           +TS+VGSIGVL QYP V   +DKLG+ ++ VKSSP+KA PSPF   N     M++ ++  
Sbjct: 140 KTSIVGSIGVLIQYPDVSGLMDKLGIKLEEVKSSPLKASPSPFKPTNDDERAMVRKLILD 199

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           SY WFV +V+E R + +++ L L+DG I+TG +    GLID VGG+ E    L   GVD 
Sbjct: 200 SYDWFVGIVAERRKMTHEQALALADGSIFTGRQGVTNGLIDAVGGETEAIDWLATKGVDA 259

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP----------LMKQTKVQGLWAVWNP 293
            ++ ++  +  +   F   K +  +      +P             +  + GL +VW+P
Sbjct: 260 KLKVVEWKDTERRGSFLWSKAMVKTVGSALGLPGYSSDVIHELGADRLFLDGLVSVWHP 318


>gi|237756040|ref|ZP_04584621.1| signal peptide peptidase SppA, 36K type [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691807|gb|EEP60834.1| signal peptide peptidase SppA, 36K type [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 274

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 138/253 (54%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVS 72
           +++ ++ L V+++  S+   ++ P V  I I G I D  + +  I + ++D+S  A+++ 
Sbjct: 5   ILIGIIALIVIFYVISALRYESQPKVGLIRIEGTITDYLDTVSIISQATKDESIKAVVID 64

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           + SPGG+  A + I+RAI+K++ +KPV+  +  +AAS GY IS  +N+I A   ++ GSI
Sbjct: 65  VDSPGGAVGASQEIYRAIEKLREKKPVVVSMGNVAASGGYYISAPANVIYANPGTITGSI 124

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GV+ Q+  V   L+K GV + ++KS   K    P   + P+   +++  V   Y  F+  
Sbjct: 125 GVIIQHVDVSEILNKFGVKVNTIKSGANKDILYPTKPLLPEQKALLEKTVMDVYDQFLDA 184

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           + + R I  D     +DGR+++G EAK +GL+D +G  ++       LG  +    + + 
Sbjct: 185 IVKYRPIKKDILKSYADGRVFSGNEAKALGLVDKIGNIQDAISEAKKLGKLKEDAPVIEL 244

Query: 253 NPPKNYWFCDLKN 265
            P K+     + +
Sbjct: 245 KPKKSLLDEFMNS 257


>gi|325294625|ref|YP_004281139.1| signal peptide peptidase SppA, 36K type [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065073|gb|ADY73080.1| signal peptide peptidase SppA, 36K type [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 292

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/279 (27%), Positives = 145/279 (51%), Gaps = 4/279 (1%)

Query: 5   LKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
           LKK  T   ++  + +    F   +SS V      +  + + G I+ S   ++ ++++ R
Sbjct: 4   LKKFFTFLGIVFFILILFSIFKGFFSSKVAVPGEKIGVVKVEGVIKRSDTYVKLLDKLER 63

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           +    A+++ + SPGG   A + I+  ++++  +KP++  +  +AAS G  IS  +  IV
Sbjct: 64  NKEIKAIVLRVDSPGGVVGACQEIYDKVKEITKKKPIVVSMGSIAASGGLYISVPATKIV 123

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A   ++ GSIGV+ Q   VK   DK+G+ + +VKS   K   +PF E +  ++Q++Q ++
Sbjct: 124 ANPGTITGSIGVILQAYNVKELADKVGIKVITVKSGKFKDLLNPFREPDKGSLQILQALI 183

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           + SY  FV  V++ R +P +K    +DGR++TG +AKK+GL+D +GG E+  +    L  
Sbjct: 184 NDSYEQFVEAVAKGRKLPIEKVKKFADGRVFTGRQAKKLGLVDELGGFEKAVEIARKLSK 243

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
             S +       P+  +   L       +L +   ++  
Sbjct: 244 SPSAK--VFEAKPERTFLQKLLGEKTEGMLNNLSRVLNG 280


>gi|302390807|ref|YP_003826627.1| signal peptide peptidase SppA, 36K type [Acetohalobium arabaticum
           DSM 5501]
 gi|302202884|gb|ADL11562.1| signal peptide peptidase SppA, 36K type [Acetohalobium arabaticum
           DSM 5501]
          Length = 326

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 152/301 (50%), Gaps = 23/301 (7%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVV-------YFSWSSHVEDNSPHVARIAIRGQI------ 47
           M F +KK+    ++  L+ L ++            +  +     +A I I G I      
Sbjct: 1   MGFSIKKMTVSILLSFLIILVILGGLGFLLINFLGNSDQAGVESIAVINIHGPISVGGTQ 60

Query: 48  -------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPV 99
                   ++ E+I++I     +    AL++ ++SPGGS+ A + I+R ++K K   KPV
Sbjct: 61  EVLSTSQTNASEVIKQINEAKDNKKIKALLLRVNSPGGSSAASDEIYRELKKFKKTGKPV 120

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
           +  + ++A S GY IS  ++ I A  +++ GSIGV+ Q+  ++   DKLGV   + KS P
Sbjct: 121 VISMGDIATSGGYYISAIADQIYANPSTITGSIGVIMQFKNLQDLYDKLGVDSITFKSGP 180

Query: 160 MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAK 219
            K   +P  ++  +  +++Q++VD  Y  F+  V+E R++   K   L+DGRI+ G +AK
Sbjct: 181 YKDIGNPDRKLTAEEKELLQNMVDEVYQEFLTAVAEGRSMSKSKVEKLADGRIYNGRKAK 240

Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP--PKNYWFCDLKNLSISSLLEDTIP 277
           K+GL+D +G   +  ++   L   ++   +  +N   P   +F    NL    LL+  + 
Sbjct: 241 KLGLVDEMGTFYDAVKTTAKLAEMKADPNLIYYNRSSPLERFFRSTTNLIKGVLLQQGLK 300

Query: 278 L 278
           +
Sbjct: 301 I 301


>gi|239908953|ref|YP_002955695.1| putative signal peptide peptidase SppA [Desulfovibrio magneticus
           RS-1]
 gi|239798820|dbj|BAH77809.1| putative signal peptide peptidase SppA [Desulfovibrio magneticus
           RS-1]
          Length = 312

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/261 (24%), Positives = 132/261 (50%), Gaps = 4/261 (1%)

Query: 10  TRYVMLSLVTLTVVYFSWSSHVED----NSPHVARIAIRGQIEDSQELIERIERISRDDS 65
              +++  +      F      E         +  + + G I D++E++  I ++  DD+
Sbjct: 23  AAVILVFGIAAAFGVFGHDEEGESLLGLAEARIGVVRVEGPINDAEEVVAFIRKLREDDT 82

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
              +I+ ++SPGG+    + ++ A+++++ +KPV+     +AAS GY  +CA++ I +  
Sbjct: 83  VKGVILRINSPGGAFGPSQEMYMAVKRLRAKKPVVASFSAVAASGGYYAACAADRIFSNP 142

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
            S+ GSIGV+ Q    +  + KLG+S+ S+ +  +K   SPF +++ +    ++ +++  
Sbjct: 143 GSITGSIGVITQLANARELMQKLGLSMDSLTTGKLKDAGSPFKQLSDEQRAYLEGLINDL 202

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
              F   V++ R +  +   +++DGR  TGA A+ +GL+D +GGQE+    L      + 
Sbjct: 203 NAQFSGDVAKERKLTPEAVALIADGRAMTGARAQAIGLVDELGGQEDAVGYLKKELGLKG 262

Query: 246 IRKIKDWNPPKNYWFCDLKNL 266
              +      KN +F  L + 
Sbjct: 263 EVPLFKGPKKKNSFFEKLSSS 283


>gi|239831003|ref|ZP_04679332.1| signal peptide peptidase SppA, 36K type [Ochrobactrum intermedium
           LMG 3301]
 gi|239823270|gb|EEQ94838.1| signal peptide peptidase SppA, 36K type [Ochrobactrum intermedium
           LMG 3301]
          Length = 323

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 103/296 (34%), Positives = 184/296 (62%), Gaps = 12/296 (4%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSAT 67
            +  +++L    +             + PH+A++ I G I +++EL++R+++I+RDD+  
Sbjct: 21  WRGAFLLLIAALIAGFASWSMRGTNFSQPHIAKVRIEGTIFENEELLKRLDKIARDDAVK 80

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
            +I+ L SPGG+   GEAIF A++K+  +KPV+T+V  +AASAGY+I+ AS+ I+A +TS
Sbjct: 81  GVILVLDSPGGTTVGGEAIFEAVRKIAAKKPVVTQVGTLAASAGYMIASASDHIIARQTS 140

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           +VGSIGVLFQYP +   LD +GV ++++KSSP+KAEP+ FS  + +A  M+ +++  SY 
Sbjct: 141 IVGSIGVLFQYPDLSKLLDTIGVKVETIKSSPLKAEPNYFSPASDEAKGMISNMIMDSYA 200

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           WFV +V + R+  +++ L L++G ++TG +A    LID +GG+EE    L   G+ + + 
Sbjct: 201 WFVDIVEKRRSFTHEQALALANGAVFTGRQALDKKLIDGLGGEEEAVAWLAGKGLSKDLP 260

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292
           ++ +W P  +     L++L I +        ++   ++     ++  + GL +VW+
Sbjct: 261 RL-EWKPVNDDTGFSLRDLIIHAGARLIGVPQEADGVLKQIAKERIFLDGLLSVWH 315


>gi|258592126|emb|CBE68431.1| Signal peptide peptidase SppA, 36K type precursor [NC10 bacterium
           'Dutch sediment']
          Length = 290

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 82/286 (28%), Positives = 144/286 (50%), Gaps = 4/286 (1%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSAT 67
           I    V +SL+ L  + FS+          VA I + G I DS+E+IE++E+   + S  
Sbjct: 7   IVGLTVFVSLLILFSLAFSFGRWERLGGSKVALITVDGVILDSKEIIEQLEKYRTNPSVK 66

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAE 125
           A+++ ++SPGG     + I   + K +   +KP++  +  +AAS GY I+ A+++IVA  
Sbjct: 67  AIVLRINSPGGGVAPSQEIHEEVLKTRQTDKKPIVASMGSVAASGGYYIASATDLIVANP 126

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
            ++ GSIGV+ Q P +   + K+GV    VKS   K   SP  E+     Q++Q ++D  
Sbjct: 127 GTITGSIGVVLQVPNISGLMQKIGVKSVVVKSGLHKDLASPTREMTDAERQILQGMLDDV 186

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           +  F+  V+  R I   K   ++DGRI++G EA+ +GL+D +G  ++  +   AL   + 
Sbjct: 187 HGQFIDAVAMGRRIDRKKVETMADGRIFSGREAQSLGLVDQLGNLQDAIERAGALAGIRG 246

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
              +             L+     SLL   +P+   + +   + +W
Sbjct: 247 KPTVIQERKRGLLLMDLLRGSL--SLLNIDVPIYSPSTLSVNYLLW 290


>gi|197119483|ref|YP_002139910.1| peptidase S49 family peptidase [Geobacter bemidjiensis Bem]
 gi|197088843|gb|ACH40114.1| peptidase, S49 family [Geobacter bemidjiensis Bem]
          Length = 293

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 136/283 (48%), Gaps = 1/283 (0%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
           F         ++L L  + VV    +         V  + ++G I D QE + ++  + +
Sbjct: 7   FYGSLFIAGVLLLFLFCVGVVKVLLNDGDSLKGDGVGLVELKGLIVDGQETVRQLRELKK 66

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           D+   A+++ + SPGG     + I+ A++ V   K V+  +  +AAS GY  +  + +I 
Sbjct: 67  DERVKAVVLRIDSPGGVVGPSQEIYAAVKGVAKVKKVVVSMGSVAASGGYYAAAPATLIY 126

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A   ++ GSIGVL ++  ++  +DK+G+   ++K+   K   SP   ++ +   M+Q V+
Sbjct: 127 ANPGTITGSIGVLMKFSNIEGLMDKVGLKAFTIKTGKFKDVGSPVRTMSDEERGMLQGVI 186

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           DS++  F++ V+E R +P ++   ++DGRI++G +A    L+D +G  ++  +    LG 
Sbjct: 187 DSTHQQFIKAVAEGRKLPVEQVRAIADGRIFSGEQALAAKLVDRIGTLQDAVEEAGRLGG 246

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
            +   ++      K+  F  L +      LE          + 
Sbjct: 247 IKGEPELISPPRKKSRIFGAL-SERAEQQLEQFSGSDSGVSLD 288


>gi|116749550|ref|YP_846237.1| signal peptide peptidase SppA, 36K type [Syntrophobacter
           fumaroxidans MPOB]
 gi|116698614|gb|ABK17802.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49
           [Syntrophobacter fumaroxidans MPOB]
          Length = 290

 Score =  164 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/276 (27%), Positives = 138/276 (50%), Gaps = 3/276 (1%)

Query: 5   LKKIKTRYVMLSLV---TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERIS 61
           +K+    ++++S        V      S     S  +  + I+G I ++ E+++ I+   
Sbjct: 1   MKRRTLWFIVISFFVFCGFIVWLLGSDSDFFKGSNRIGVVEIKGTISNASEVLKSIKEFR 60

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
           +D S  A++V + SPGG     + I+R +++    KPV+  +  +AAS GY I+ A+N I
Sbjct: 61  KDQSIRAILVRIDSPGGGVGPSQEIYRELKRTIKHKPVVASLGGIAASGGYYIASAANRI 120

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
           VA+  ++ GSIGV+   P ++    K+G  + ++K+   K   +P  E+ P+  ++MQ  
Sbjct: 121 VASPGTITGSIGVIMYLPMLRDLFGKIGYEMVTIKAGRYKDIGNPGREMTPEEKEIMQAS 180

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           +D ++  F+R V+  R +P +K   ++DGRI  G  AK++GL+D +G  E+   +  ALG
Sbjct: 181 MDEAHRQFIRDVAAGRKMPEEKIREIADGRIILGQTAKELGLVDELGNFEDAVDAAVALG 240

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
             +    I      +      L     S  L   + 
Sbjct: 241 HVKGEADIVYAKKKRMSLLDLLLGSDASEKLSTWLD 276


>gi|319781468|ref|YP_004140944.1| signal peptide peptidase SppA, 36K type [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317167356|gb|ADV10894.1| signal peptide peptidase SppA, 36K type [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 318

 Score =  164 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 109/299 (36%), Positives = 168/299 (56%), Gaps = 14/299 (4%)

Query: 9   KTRYVMLSLVTLTVVYFS----WSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64
             R V + +V L V+  S              H+A++ I G I + +ELI+R+E I    
Sbjct: 20  FWRVVAIGIVALGVIALSTWFYGDDFGGSTVDHIAKVKIEGTITEDEELIKRLETIRLSS 79

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
               +I+S+ SPGG+   GE+I+  ++K+   KPV+ EV  +AASAGY+I+ A++ IVA 
Sbjct: 80  KVKGVILSIDSPGGTTVGGESIYEEVRKLAADKPVVAEVGTLAASAGYMIASAADHIVAR 139

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
           +TS+VGSIGVL QYP V   +DKLGV ++ VKSSP+KA PSPF   N     M++ ++  
Sbjct: 140 KTSIVGSIGVLIQYPDVSGLMDKLGVKLEEVKSSPLKAAPSPFKPTNDDERAMVRKLILD 199

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           SY+WFV +V+E R +  ++ LVL+DG I+TG +    GLID VGG+      L   GVD 
Sbjct: 200 SYNWFVDIVAERRKMSREQALVLADGSIFTGRQGVANGLIDAVGGETVAIDWLATKGVDA 259

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL----------MKQTKVQGLWAVWNP 293
            ++ ++  +  +   F   K ++ +      +P             +  + GL +VW+P
Sbjct: 260 KLKVVEWKDTERRGGFLFSKAMAQTIGSALGLPAYSSDVIHELGADRLFLDGLVSVWHP 318


>gi|260460501|ref|ZP_05808752.1| signal peptide peptidase SppA, 36K type [Mesorhizobium
           opportunistum WSM2075]
 gi|259033606|gb|EEW34866.1| signal peptide peptidase SppA, 36K type [Mesorhizobium
           opportunistum WSM2075]
          Length = 318

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 106/299 (35%), Positives = 164/299 (54%), Gaps = 14/299 (4%)

Query: 9   KTRYVMLSLVTLTVVYFSW----SSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64
             R     +V L V+  S              H+A++ I G I +  ELI+R+E I +  
Sbjct: 20  FWRVAAFGIVALGVIALSAWLYGDDFGGATVDHIAKVRIEGTITEDDELIKRLETIRQSS 79

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
               +I+++ SPGG+   GE+I+  ++K+   KPV+ EV  +AASAGY+I+ A++ IVA 
Sbjct: 80  KVKGVILAIDSPGGTTVGGESIYEEVRKLAADKPVVAEVGTLAASAGYMIASAADHIVAR 139

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
           +TS+VGSIGVL QYP V   +DKLGV ++ VKSSP+KA PSPF   N     M++ ++  
Sbjct: 140 KTSIVGSIGVLIQYPDVSGMMDKLGVKLEEVKSSPLKASPSPFKPTNDDERAMVRKLILD 199

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           SY WFV +V+E R + +++ L L+DG I+TG +    GLID VGG+      L   GVD 
Sbjct: 200 SYDWFVGIVAERRKMSHEQALALADGSIFTGRQGVANGLIDAVGGETVAIDWLATKGVDA 259

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP----------LMKQTKVQGLWAVWNP 293
            ++ ++     +   F   K++  +      +P             +  + GL +VW+P
Sbjct: 260 KLKVVEWKETERRGGFLWSKSMVKTIGSALGLPDSGGDIIHELGADRLFLDGLVSVWHP 318


>gi|77919477|ref|YP_357292.1| signal peptide peptidase SppA, 67K type [Pelobacter carbinolicus
           DSM 2380]
 gi|77545560|gb|ABA89122.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Pelobacter carbinolicus DSM 2380]
          Length = 298

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/257 (28%), Positives = 123/257 (47%), Gaps = 2/257 (0%)

Query: 35  SPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
              +  + I G +  S+  ++++     D S  A+I+ ++SPGG+    + I   + +V 
Sbjct: 40  GERIGVVEISGMLMVSEPTVKQLVSFKEDHSIKAVILRVNSPGGAVAPSQEIHDEVARVA 99

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
             KPV+  +  +AAS GY +S  +  IVA   ++ GSIGV+ Q    +   DKLG+  + 
Sbjct: 100 ALKPVVVSMASVAASGGYYVSIPAQRIVANPGTITGSIGVIMQTTNYQELYDKLGLKNEV 159

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
           VKS   K   SP   + P   +++Q V+D  Y  FV  VS+ R +P +K   L+DGRI+T
Sbjct: 160 VKSGQHKDLGSPLRPMTPADRKILQGVIDDVYDQFVSAVSKGRKLPVEKVRTLADGRIFT 219

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLED 274
           G +A + GL+D +GG ++       L       K+      K          S+S  +  
Sbjct: 220 GRQAMQAGLVDSLGGMQDAVAIASELAGISGEPKLVYPPKDKESLLKYFIEESVSQ-VGR 278

Query: 275 TIPLMKQTKVQGLWAVW 291
            +   +Q     +  +W
Sbjct: 279 ALQQRQQGS-PAMQYLW 294


>gi|51893930|ref|YP_076621.1| putative proteinase IV [Symbiobacterium thermophilum IAM 14863]
 gi|51857619|dbj|BAD41777.1| putative proteinase IV [Symbiobacterium thermophilum IAM 14863]
          Length = 312

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 138/275 (50%), Gaps = 22/275 (8%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSW-------SSHVEDNSPHVARIAIRGQIE----- 48
           M+  +K+      ++++V L++    W        S    +   VA + + G I      
Sbjct: 1   MKNTMKRWIAAGAIVAIVVLSLAVAFWQGTGREVGSPKGPSGGQVALVRVEGTIVSGEGS 60

Query: 49  ---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKP 98
                     S+ +++ ++R + D +  A+++ ++SPGGS  A   I  A+++V+   KP
Sbjct: 61  GSLLSGAGAGSETIVKHLDRAAEDPAVKAVVLRVNSPGGSVVASWEIAEAVRRVQDAGKP 120

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
           V+  + E AAS GY IS  ++ I+A+  ++ GSIGV+ Q   +    +K+G    + KS 
Sbjct: 121 VVVSMGESAASGGYWISAGADRIIASPDTMTGSIGVILQVGNLSEVYEKVGYKTYTFKSG 180

Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEA 218
           P K   SP  E+      ++QD+VD +Y  FV +V+E R +   +   ++DGRI TG +A
Sbjct: 181 PFKDMGSPDREMTDAERDLLQDLVDETYEAFVPVVAEGRGMDEAQVRKIADGRILTGRKA 240

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
            ++GL+D +G  +   Q    L       ++++ N
Sbjct: 241 LELGLVDELGDLKRAVQVAAELAGLPGEPEVREMN 275


>gi|322420579|ref|YP_004199802.1| signal peptide peptidase SppA, 36K type [Geobacter sp. M18]
 gi|320126966|gb|ADW14526.1| signal peptide peptidase SppA, 36K type [Geobacter sp. M18]
          Length = 293

 Score =  163 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/275 (24%), Positives = 133/275 (48%), Gaps = 4/275 (1%)

Query: 1   MEFVLKKIKTRYVMLSLVTL----TVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIER 56
           M+ +L  I   ++ L L+       V               V  + ++G I D QE+I +
Sbjct: 1   MKKLLLWIFAVWLGLFLLFAACVAVVTALIGDRDGLAGGTGVGLVELKGVIVDGQEIIRQ 60

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116
           +  + +D+   A++  + SPGG     + I+ A++ +   K V+  +  +AAS GY +S 
Sbjct: 61  LRELRKDEDVKAVVFRVDSPGGVVGPSQEIYAAVKDLAKVKKVVVSMGSVAASGGYYVSA 120

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
            + +I A   ++ GSIGVL ++  ++  +DK+G+   ++K+   K   SP   +  +   
Sbjct: 121 PATLIYANPGTITGSIGVLMKFSNIEGLMDKVGMKAFTIKTGKFKDTGSPARSMTGEERA 180

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           M+Q V+DS++  FV+ V++ R +P ++   ++DGRI++G +A  + L+D +G  ++    
Sbjct: 181 MLQGVIDSTHGQFVQAVAQGRKLPVEQVRGIADGRIFSGEQALALKLVDRIGSLQDAVDE 240

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
              L   +   ++      K      L   +   L
Sbjct: 241 AGRLAGIKGEPRLIKPPKKKGQVLDLLVEGAAQRL 275


>gi|254478286|ref|ZP_05091666.1| signal peptide peptidase SppA, 36K type [Carboxydibrachium
           pacificum DSM 12653]
 gi|214035751|gb|EEB76445.1| signal peptide peptidase SppA, 36K type [Carboxydibrachium
           pacificum DSM 12653]
          Length = 306

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 86/290 (29%), Positives = 148/290 (51%), Gaps = 13/290 (4%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----------SQELIER 56
           I      + L +L +   S  S    +S  +  + I   I D           + + +E+
Sbjct: 11  ILVLVFAIVLASLFLTQPSTESQKTVSSNTIGVVTIEEVIGDVSSNILGIPQFTSDPVEQ 70

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLIS 115
           I R   D++  A++V ++SPGGSA     I+  ++++K   K VI  + + AAS GY+ +
Sbjct: 71  IRRAQEDNTVKAVVVKINSPGGSAAKSVEIYTELKRLKETGKKVIVSMGDAAASGGYMAA 130

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
           C  +IIVA   ++ GSIGV+ QY   +   DKLG+   ++KS P K   SP  ++ P+  
Sbjct: 131 CGGDIIVANPATITGSIGVIMQYTNYEGLYDKLGLKEITIKSGPYKDMGSPTRDLTPEEK 190

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           +++Q ++D +Y  FV +VSE R +P +K   L+DGRI+TG +A KVGL+D +G   +   
Sbjct: 191 RILQGIIDDTYEQFVEIVSEGRKMPIEKVKELADGRIFTGRQALKVGLVDKLGDFYDAVD 250

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
                   +    +K +  P + W     + + S+L E  + ++K   + 
Sbjct: 251 IAAKEAGIKGKPVLKYYTTP-SPWSILFGSTAQSTLQERGLEILKVLFID 299


>gi|302390691|ref|YP_003826512.1| signal peptide peptidase A [Thermosediminibacter oceani DSM 16646]
 gi|302201319|gb|ADL08889.1| signal peptide peptidase A [Thermosediminibacter oceani DSM 16646]
          Length = 307

 Score =  162 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 80/299 (26%), Positives = 150/299 (50%), Gaps = 18/299 (6%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNS-----PHVARIAIRGQIED----------S 50
           K++ T  +++ ++   +  F+     E+ S       V  I + G I            S
Sbjct: 5   KRLITIALIVLVIASVIAAFALGPGREEGSTAAEDNMVGVINLEGVITGGSGDAFLSSGS 64

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAAS 109
             ++ ++   S+D S  AL++ ++SPGGSA A + I++ + KV +  K V+  + ++AAS
Sbjct: 65  DHIVHQLHEASQDPSIKALVIRINSPGGSAAASQEIYQEVLKVKEAGKKVVVSMGDVAAS 124

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
            GY ++ A++ IVA   ++ GSIGV+ ++  V+   +KLG+ +  +KS+  K   SP   
Sbjct: 125 GGYWVASAADKIVANPATITGSIGVIMEFQNVEGLFEKLGLKVNVIKSAEHKDIGSPTRP 184

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
           +  +   + Q +VD  Y+ F+ +V++ R +  +K   L+DGRI+TG +AK++GL+D +G 
Sbjct: 185 MTEEERAIFQGMVDDIYNQFIDVVAKGRKMDREKVKELADGRIFTGRQAKELGLVDELGN 244

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
             +  +    L   +   +IK++   +      L   +   L    I L       GL 
Sbjct: 245 FYDALKIAAELAGIEGEPEIKEYG--RKTPLEILMTGAPGLLQSRNIILPWGIDPAGLL 301


>gi|150395248|ref|YP_001325715.1| signal peptide peptidase SppA, 36K type [Sinorhizobium medicae
           WSM419]
 gi|150026763|gb|ABR58880.1| signal peptide peptidase SppA, 36K type [Sinorhizobium medicae
           WSM419]
          Length = 319

 Score =  162 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 122/296 (41%), Positives = 183/296 (61%), Gaps = 10/296 (3%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66
           +     V+ +       +  W    E    HVAR+A+ G I+D +EL+ER+ERI+ + S 
Sbjct: 20  RWAAAAVLFAGGLALFAFSGWGDVTERARDHVARVAVTGLIQDDRELVERLERIAENQSV 79

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
            ALIV++SSPGG+ Y GE I++A++KV  +KPV+++V  +AASAGYLI+ A + IVA ET
Sbjct: 80  KALIVTISSPGGTTYGGEVIYKAVRKVAAKKPVVSDVRTLAASAGYLIALAGDRIVAGET 139

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           S+ GSIGV+FQYP VK  +DKLGVS++S+KS P+KAEPSPF   + +A  M+Q ++D SY
Sbjct: 140 SITGSIGVIFQYPQVKTLMDKLGVSLESIKSRPLKAEPSPFHPPSDEARAMIQAMIDDSY 199

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
            WFV LV+E R +P  + L L+DGRI+TG +A +  L+D +GG +E+   L    V + +
Sbjct: 200 GWFVDLVAERRKLPRAEALGLADGRIFTGRQALEGKLVDELGGDDEIRAFLAERKVSKDL 259

Query: 247 RKIKDWNPPK--NYWFCDLKNLSISSLLEDTIPLMKQTK--------VQGLWAVWN 292
             +    P    ++    L   ++ +L  +  P MK  +        + GL +VW 
Sbjct: 260 PVLDWEAPSSTLSFGLGSLLAEAVKALGYEAFPAMKGLEKTGLDKLFLDGLLSVWQ 315


>gi|170748863|ref|YP_001755123.1| signal peptide peptidase SppA, 36K type [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655385|gb|ACB24440.1| signal peptide peptidase SppA, 36K type [Methylobacterium
           radiotolerans JCM 2831]
          Length = 320

 Score =  162 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 98/290 (33%), Positives = 158/290 (54%), Gaps = 9/290 (3%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVS 72
           +++++  L     + +       P +ARI++ G I  S+   + ++R+   D+   +IVS
Sbjct: 29  LIVAVGALGYRVRTGADGAFAVQPQIARISVSGFIAGSEATAKLMKRVGDSDAVKGVIVS 88

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           ++SPGG+    E IFR ++ +  +KP++  V   AAS  Y+ + A++ IVA ETSLVGSI
Sbjct: 89  INSPGGTTTGSEEIFRNLRALAAKKPIVAFVDGTAASGAYITAIAADHIVARETSLVGSI 148

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GVLFQYP     LDK+GV ++SVKSSP+KAEPS F+  +P+A   +  VV  +Y WF  L
Sbjct: 149 GVLFQYPDFSGLLDKVGVKVESVKSSPLKAEPSGFTPTSPEARAALASVVGDTYAWFKGL 208

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           V+E R +   +   +SDGR+++G ++  + L+D +GG+ +    L +    Q+   IKDW
Sbjct: 209 VAERRGMDPAQLSTVSDGRVFSGRQSVPLKLVDELGGERQAVAWLESARGVQANLPIKDW 268

Query: 253 NPPKNYWFCDLKNLSISSLL---------EDTIPLMKQTKVQGLWAVWNP 293
            P     F       I + L            +    +    G+ A+W P
Sbjct: 269 KPASESRFSLWSAAGIGADLLGLEGLAARLRAVGAEAEAARGGMLALWRP 318


>gi|303326177|ref|ZP_07356620.1| signal peptide peptidase SppA, 36K type [Desulfovibrio sp.
           3_1_syn3]
 gi|302864093|gb|EFL87024.1| signal peptide peptidase SppA, 36K type [Desulfovibrio sp.
           3_1_syn3]
          Length = 358

 Score =  162 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVE---DNSPHVARIAIRGQIEDSQELIERIERISRDD 64
                 +L+LV + +  FS   + +        +A + +RG I D    +  I +I R+ 
Sbjct: 67  FIFWLSLLALVLIGLAVFSRDENGQGLLSGGDRLALVMVRGPIMDVAPTLAWIRKIERNP 126

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
               +++ + SPGG A A + ++ A+ ++  ++P+   +  MAAS G ++S A   I A 
Sbjct: 127 QVKGVLLRVDSPGGGAAASQEVYDALARLARKRPLAVSMGSMAASGGLMVSMAGGRIFAN 186

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
            +++ GSIGV    P ++  L K+GV  +++ ++P K   S    ++P+     + V+  
Sbjct: 187 PSTVTGSIGVRMDIPQLQGLLGKIGVGQETLVTAPYKNAGSYLHPLSPEDRAYFEGVLKD 246

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            +  FV +V++ R++P+++   L+ G+I+TG EA K+GL+D +GGQ+   + L       
Sbjct: 247 MHEQFVDIVAKGRDMPHERAGGLASGKIFTGQEALKLGLVDELGGQDAALRWLAEQTGVP 306

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           + RK+    P ++ W  D      S    D   L     +    + W 
Sbjct: 307 AERKLLT-KPKESSWLADSLK---SWFGLDLSTLATMGGLNAAGSDWR 350


>gi|15964138|ref|NP_384491.1| putative protease IV transmembrane protein [Sinorhizobium meliloti
           1021]
 gi|307301283|ref|ZP_07581045.1| signal peptide peptidase SppA, 36K type [Sinorhizobium meliloti
           BL225C]
 gi|307317954|ref|ZP_07597391.1| signal peptide peptidase SppA, 36K type [Sinorhizobium meliloti
           AK83]
 gi|15073314|emb|CAC41822.1| Putative protease IV transmembrane protein [Sinorhizobium meliloti
           1021]
 gi|306896356|gb|EFN27105.1| signal peptide peptidase SppA, 36K type [Sinorhizobium meliloti
           AK83]
 gi|306903739|gb|EFN34326.1| signal peptide peptidase SppA, 36K type [Sinorhizobium meliloti
           BL225C]
          Length = 319

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 127/301 (42%), Positives = 186/301 (61%), Gaps = 14/301 (4%)

Query: 5   LKKIKTRYVMLSLV--TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
           L   +   V + +        +  W    E    HVAR+A+ G I+D +EL+ER+ERI+ 
Sbjct: 16  LSFWRWAAVAVLVAGGLALFAFSGWGDVTERARDHVARVAVTGLIQDDRELVERLERIAD 75

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           + S  ALIV++SSPGG+ Y GE I++AI+KV  +KPV+++V  +AASAGYLI+ A + IV
Sbjct: 76  NQSVKALIVTISSPGGTTYGGEVIYKAIRKVAEKKPVVSDVRTLAASAGYLIALAGDRIV 135

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A ETS+ GSIGV+FQYP VK  +DKLGVS++S+KS P+KAEPSPF   + +A  M+Q ++
Sbjct: 136 AGETSITGSIGVIFQYPQVKTLMDKLGVSLESIKSRPLKAEPSPFHPPSDEARAMIQAMI 195

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           D SY WFV LV+E R +P  + L L+DGRI+TG +A +  L+D +GG +E+   L    V
Sbjct: 196 DDSYGWFVDLVAERRKLPRPEALALADGRIFTGRQALEGKLVDELGGDDEIRAFLAERKV 255

Query: 243 DQSIRKIKDWNPPK---NYWFCDLKNLSISSLLEDTIPLMKQTK--------VQGLWAVW 291
            + +  + DW  P    ++    L   S+ +L  +  P MK  +        + GL +VW
Sbjct: 256 SKDLP-VLDWEAPSGTLSFGLGSLLAESVKALGYEAFPTMKSLEKTGLDKLFLDGLVSVW 314

Query: 292 N 292
            
Sbjct: 315 Q 315


>gi|253699780|ref|YP_003020969.1| signal peptide peptidase SppA, 36K type [Geobacter sp. M21]
 gi|251774630|gb|ACT17211.1| signal peptide peptidase SppA, 36K type [Geobacter sp. M21]
          Length = 293

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 67/273 (24%), Positives = 132/273 (48%), Gaps = 1/273 (0%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVS 72
           ++L L  + +V    +         V  + ++G I D QE + ++  + +D    A+++ 
Sbjct: 17  LLLFLACVGIVKALLNDGDSLKGDGVGLVELKGPIIDGQETVRQLRELKKDKRVKAVVLR 76

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           + SPGG     + I  A++ V   K V+  +  +AAS GY  +  + +I A   ++ GSI
Sbjct: 77  IDSPGGVVGPSQEIHAAVKGVAKVKKVVVSMGSVAASGGYYAAAPATLIYANPGTITGSI 136

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GVL ++  ++  +DK+G+   ++K+   K   SP   ++ +   M+Q V+DS++  F+R 
Sbjct: 137 GVLMKFSNIEGLMDKVGLKAFTIKTGKFKDVGSPARTMSDEERGMLQGVIDSTHQQFIRA 196

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           V+E R +P ++   ++DGRI++G +A    L+D +G  ++  +    LG  +   ++   
Sbjct: 197 VAEGRKLPVEQVRAIADGRIFSGEQALAAKLVDRIGTLQDAVEEAGRLGGVKGEPELIRP 256

Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
              K   F  L +      LE          + 
Sbjct: 257 PRKKTRIFGVL-SERAEQHLEQFSGSDSGVSLD 288


>gi|299133338|ref|ZP_07026533.1| signal peptide peptidase SppA, 36K type [Afipia sp. 1NLS2]
 gi|298593475|gb|EFI53675.1| signal peptide peptidase SppA, 36K type [Afipia sp. 1NLS2]
          Length = 326

 Score =  161 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 86/302 (28%), Positives = 157/302 (51%), Gaps = 15/302 (4%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDS 65
           + +    V+L++V   ++              +AR+ I G I  + E +  +ER+ + D 
Sbjct: 22  RVVSGLLVILAVVGGGMLLTPAGRQALTGKSAIARVKIEGLIRSNDERVAALERLEKSD- 80

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
           A A+IV ++SPGG+    E +F A+ ++K +KP++  +  + AS  Y+ + AS+ I+A +
Sbjct: 81  AAAVIVHINSPGGTTAGSEQLFDALTRLKAKKPLVVVIEGLGASGAYITALASDHIIAQQ 140

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
           TSLVGSIGVLFQ+P     L  +GV ++ VKS+P+KA P+ +   +P+A   +  +V  S
Sbjct: 141 TSLVGSIGVLFQFPNFTDLLKTVGVKVEEVKSAPLKAAPNGYEPTSPEARAALDALVKDS 200

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           + WF  LV   R++       +SDGR++TG +A  + L+D +G ++   + L A    + 
Sbjct: 201 FAWFKDLVKTRRHMDDATLQTVSDGRVFTGRQAMGLKLVDELGDEKTAVKWLQAQNKIKG 260

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLE--------------DTIPLMKQTKVQGLWAVW 291
              ++D+     +        + ++ LE                  L +Q +++G+ A+W
Sbjct: 261 DLPVRDYKLSPRFSDMTFLRAAAATTLESLGLPTVARFVGGNGAASLSEQLQLEGMLALW 320

Query: 292 NP 293
            P
Sbjct: 321 RP 322


>gi|17988076|ref|NP_540710.1| putative protease IV [Brucella melitensis bv. 1 str. 16M]
 gi|17983826|gb|AAL52974.1| putative protease iv [Brucella melitensis bv. 1 str. 16M]
          Length = 301

 Score =  161 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 107/290 (36%), Positives = 177/290 (61%), Gaps = 12/290 (4%)

Query: 14  MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSL 73
           ML    +    F      E N PH+A++ I G I +++EL++R+++I+ DD+   +I+ L
Sbjct: 1   MLLAALIAGFAFYSLRSAEFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLL 60

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
            SPGG+   GEAI+ A++K+  +KPV+T+V  +AASAGY+I+ AS+ IVA +TS+VGSIG
Sbjct: 61  DSPGGTTVGGEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIG 120

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           VLFQYP +   LD LGV ++++KSSP+KAEP+ FS  + +A  M++ ++  SY WFV +V
Sbjct: 121 VLFQYPDLSKLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRSMIMDSYDWFVGIV 180

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
            E R   +++ L L++G ++TG +A    LID +GG+ E    L   G+   + ++ +W 
Sbjct: 181 QERRAFTHEQALALANGAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPRL-EWK 239

Query: 254 PPKNYWFCDLKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292
           P  +     L++L I +        ++    +      +  + GL +VW+
Sbjct: 240 PVGSETGFSLRDLIIHAGARLLGLPQEADGAIKEIARDRIFLDGLLSVWH 289


>gi|118593739|ref|ZP_01551108.1| Clp protease:Peptidase U7:Signal peptide peptidase, SppA 36 kDa
           type [Stappia aggregata IAM 12614]
 gi|118433649|gb|EAV40312.1| Clp protease:Peptidase U7:Signal peptide peptidase, SppA 36 kDa
           type [Stappia aggregata IAM 12614]
          Length = 328

 Score =  161 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 100/298 (33%), Positives = 174/298 (58%), Gaps = 12/298 (4%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66
           +I T  V+ + +   ++Y S  S +   + H+ARI I G I +S++ ++ I++I + D+ 
Sbjct: 22  RIATFVVIAAALIGGLLYVSGGSELSKRTAHIARIPIEGVILESRKTLQMIDKIGKSDAV 81

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
             +++S++SPGGS   GEA++ A++K+  +KPV+ E+  +  SAGY+I+ AS+ IVA   
Sbjct: 82  KGVVISINSPGGSTTGGEALYEALRKLSEKKPVVAEIRTIGTSAGYMIALASDHIVARYN 141

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           S+ GSIGVLFQ+  +   ++ +GV + +VKS+P+KAEP  +S+ +P+A  M+Q +V++SY
Sbjct: 142 SITGSIGVLFQFGNISKLMETVGVEMDAVKSAPLKAEPDFYSQTSPEARAMLQKLVNNSY 201

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
            WFV LV+E R++   +   L+DGRI TG +A    L+D +GG++     L +       
Sbjct: 202 DWFVSLVAERRSLAPPRAKELADGRILTGHDALTEKLVDAIGGEDAAIDWLVSEKGVAKD 261

Query: 247 RKIKDWN--------PPKNYWFCDLKNLSISSLLE---DTIPLM-KQTKVQGLWAVWN 292
             +  W+        P  +    +      S+LLE   +   L+ +   + GL +VW 
Sbjct: 262 LPVVTWSTNDNLEELPFSSRVSREFGKGIGSALLEPVSEAKGLIPRGLTLDGLVSVWQ 319


>gi|94971132|ref|YP_593180.1| signal peptide peptidase A [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553182|gb|ABF43106.1| signal peptide peptidase A [Candidatus Koribacter versatilis
           Ellin345]
          Length = 303

 Score =  161 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 129/288 (44%), Gaps = 9/288 (3%)

Query: 11  RYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQELIERIERISRDDSA 66
            + +       +VY S  +            +A + + G I D + ++ ++++   D S 
Sbjct: 19  AFFLFVAAIFVLVYVSVRADDHAQFTGFGDRIAVVDLEGVIVDPKSVVAQLKKYGDDSSI 78

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAA 124
            A+I+ ++SPGG A A E I+R +++V++ K    +  +  + AS  Y ++ A+N I A 
Sbjct: 79  KAIILHINSPGGGAAASEEIYREVRRVRDEKHKRIVASIETVGASGAYYVASATNKIYAN 138

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
           E S+VGSIGV+ ++      L    +   ++K+   K   SP  ++ P     MQ ++D 
Sbjct: 139 EASIVGSIGVIAEWYNYADLLKWAKLKEITMKAGEFKDTGSPTRDMTPAEKAYMQALIDD 198

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            +  F+  V+  R +  +    ++DGR+WTG +A  + LID +   +             
Sbjct: 199 MHSQFIHNVATGRKVKDEDIRPIADGRVWTGRQALPMKLIDQIADFQATVADTAKSVGIS 258

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
               +      +     DL    +S L+ D   LM+     G + +W 
Sbjct: 259 GEPTLVTPERERKSLL-DLMFGDVSDLIPDRAKLMQTNV--GFYYLWK 303


>gi|182679840|ref|YP_001833986.1| signal peptide peptidase SppA, 36K type [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635723|gb|ACB96497.1| signal peptide peptidase SppA, 36K type [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 324

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 97/302 (32%), Positives = 153/302 (50%), Gaps = 15/302 (4%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSS---HVEDNSPHVARIAIRGQIEDSQELIERIERIS 61
            K    R   ++LV   +   ++ S          H+AR++I G I   ++ +  I+R+ 
Sbjct: 18  RKLSFWRIATMALVLAGIASLAYVSLGFRSGQQRAHIARLSISGLITGDRDTLRLIKRV- 76

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
            D SA A++VS+ SPGG+    E I+ A++++  +KP    V  MAAS GY+ +  ++ I
Sbjct: 77  EDSSAQAVLVSIESPGGTTTGAERIYEALRRLSRKKPTAAVVGTMAASGGYIAALGTDQI 136

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
           VA   SLVGSIGVLFQYP V   LD LGV ++ VKSSP+KA P+ F    P+A   +  +
Sbjct: 137 VAQGNSLVGSIGVLFQYPNVARLLDTLGVKVEEVKSSPLKASPNGFEPTTPEARAALVSL 196

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           ++ SY WF  LV E R +   +   +SDGR++TG +   + L+D +GG++E    L    
Sbjct: 197 INDSYSWFKGLVKERRGMDDAQLANVSDGRVFTGRQGIPLHLVDRLGGEQEAIAWLEQQK 256

Query: 242 VDQSIRKIKDWNPPKNY-----------WFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
                  ++DW   +                 L   S++ +L    P      + GL ++
Sbjct: 257 GVGKNLPVRDWKHERGLGRWGIISLAAGLAEKLGLASLALVLNGESPFAGSPLLDGLVSI 316

Query: 291 WN 292
           W 
Sbjct: 317 WQ 318


>gi|218886796|ref|YP_002436117.1| signal peptide peptidase SppA, 36K type [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218757750|gb|ACL08649.1| signal peptide peptidase SppA, 36K type [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 297

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 135/290 (46%), Gaps = 12/290 (4%)

Query: 7   KIKTRYVMLSLVTLTVVYFSW-----SSHVEDNSPHVARIAIRGQIEDSQELIERIERIS 61
            I    ++L+ V L +   +              P V  + + G I D  +    ++ + 
Sbjct: 15  FIFGFLLILAAVALFMGASAALRHLTGGAGPFAGPRVGVVRVEGMIADISKTTAWMDTLR 74

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
            D S   +++ + SPGG   A + +  A++++   KPV+  +  +AAS GY IS  +  +
Sbjct: 75  DDPSVRGVLLRVDSPGGGVAASQELLDAVRRMARVKPVVVSMGTVAASGGYYISLGATRV 134

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
           +A   +L GSIGV  + P V+  +DKLG++ +++ S  MK   SPF  + P+  + +Q +
Sbjct: 135 IANPATLTGSIGVKMELPNVQGLMDKLGLARQTLVSGDMKDAGSPFRAMTPQEREYLQAL 194

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           V   Y  FV  V+ SRN+P +K   ++DGR  TG +A ++GL+D +GG +     L  L 
Sbjct: 195 VMDMYDQFVTEVANSRNLPVEKVRAVADGRALTGRQAHELGLVDALGGMDMALTDLQQLC 254

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
                  + +  P  + W  D     +       +    +    G   V+
Sbjct: 255 GIAERPVLVE-QPKPSSWLRDALETVLD------LQPASRVITPGFLYVY 297


>gi|158521991|ref|YP_001529861.1| signal peptide peptidase SppA, 36K type [Desulfococcus oleovorans
           Hxd3]
 gi|158510817|gb|ABW67784.1| signal peptide peptidase SppA, 36K type [Desulfococcus oleovorans
           Hxd3]
          Length = 299

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 135/291 (46%), Gaps = 3/291 (1%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
           F +  +       + V   VV         ++   V  + ++G I  S+++IE ++    
Sbjct: 10  FFILVLSAIVFGSATVISFVVGLYSGKPAFESGERVGIVEVKGVILSSEQVIEELKTFRE 69

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           +D+  A++V + SPGG+    + IFR I K    K V+  +  +AAS GY ++ A+  I 
Sbjct: 70  EDAIRAIVVRIDSPGGAVGPAQEIFREIHKTAATKKVVASMGSVAASGGYYVASATEKIF 129

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A   +L GSIGV+  Y   +  +DK+G+    +KS   K   SP   +  +  +++Q+  
Sbjct: 130 ANPGTLTGSIGVIMSYTNFQELMDKIGLLPVVIKSGKYKDIGSPVRPLEEREKRILQEFA 189

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           D  +  F+  V+  RN+       L+DGRI+TG +A ++GL+D +G  E+  +++  +  
Sbjct: 190 DDIHQQFIDDVAAGRNMDAGAVAKLADGRIYTGRKALELGLVDELGNLEDAVETVGRMAG 249

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
            +             +   +L   S +  L +T+   +         ++ P
Sbjct: 250 IKGDIVQVYPERKTKFSLTELLTGSSAEELANTLMHGQALSAG---YLYRP 297


>gi|146337268|ref|YP_001202316.1| S49 family peptidase [Bradyrhizobium sp. ORS278]
 gi|146190074|emb|CAL74066.1| Putative peptidase S49 family; putative signal peptide peptidase
           SppA [Bradyrhizobium sp. ORS278]
          Length = 326

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 157/308 (50%), Gaps = 20/308 (6%)

Query: 5   LKKIKTRYVMLSLV-----TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIER 59
            K    R V + +       + +            S  +AR+ I G I   QE +E +ER
Sbjct: 16  RKLTFWRVVAVVIAIGALSAIGLAMSPRGRTALSTSGSIARVNIEGLIRSDQERVEALER 75

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119
           +  + SA A+IV ++SPGG+    E ++ ++ ++K +KP++  V  +AAS GY+ + AS+
Sbjct: 76  L-ENSSAEAVIVHINSPGGTTAGSEQLYDSLVRLKAKKPLVVVVEGLAASGGYIGAIASD 134

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179
            IVA ++SLVGSIGVLFQYP V   L  +GV I+ VKSSP+KA P+ +   +P+A   + 
Sbjct: 135 HIVAQQSSLVGSIGVLFQYPNVSELLKTVGVKIEEVKSSPLKAAPNGYEPTSPEARAALD 194

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
           D+V  SY WF  LV   RN+       ++DGR++TG +A ++ LID +G ++     L A
Sbjct: 195 DLVKDSYAWFRGLVKTRRNMDDALLEKVADGRVFTGRQAVELKLIDELGDEKTAVAWLVA 254

Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLED--------------TIPLMKQTKVQ 285
               +    ++D+     +        + S  L+                +  + +  + 
Sbjct: 255 NKNVKKDLPVRDYKLVPRFGDLTFLRTATSIALDAVGLSGIARQIERTGVVQAVDRVGLD 314

Query: 286 GLWAVWNP 293
           G+ A+W P
Sbjct: 315 GMLALWTP 322


>gi|312113690|ref|YP_004011286.1| signal peptide peptidase SppA, 36K type [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311218819|gb|ADP70187.1| signal peptide peptidase SppA, 36K type [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 328

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 93/312 (29%), Positives = 162/312 (51%), Gaps = 23/312 (7%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFS------------WSSHVEDNSPHVARIAIRGQIEDSQE 52
            +++K R  +  ++ +     +             +S       H+AR+ I G I DS+ 
Sbjct: 11  RRRLKRRLTVWRVLAIVAFVAALAFAGARSGGDDGASGFGIGRDHIARVTISGFIGDSKS 70

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
             + +E++ +DD+  A+IV++ SPGG+   GEA++  ++++ N KPV      MA SA Y
Sbjct: 71  RHDMLEKLRKDDNVKAVIVAVDSPGGTTTGGEALYEDLRELANAKPVAAVFGTMATSAAY 130

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L   A++ IVA   ++ GS+GV+FQ+  V   L K+GV +  V+S  +KA+PSPF+ V+ 
Sbjct: 131 LGGIATDYIVARGNTITGSVGVIFQWADVSELLSKVGVKVDEVRSGALKAKPSPFTPVDD 190

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            A  + + +V  S  WFV LV+E R         +  GRI+TG +A +VGLID +G ++ 
Sbjct: 191 AARALTEQLVKDSQGWFVGLVAERRKAAVSSLEDIKTGRIYTGRQAAQVGLIDAIGDEQV 250

Query: 233 VWQSLYALGVDQSIRKIKDWNP-------PKNYWFCDLKNLSISSLLE----DTIPLMKQ 281
             +         S  K++DW P                  L ++SL++    + + ++K 
Sbjct: 251 AIKWFTDARKVPSGLKVRDWKPGQSVSSLLSASMSSLALKLGVASLVDAAVLEGLDILKD 310

Query: 282 TKVQGLWAVWNP 293
             + GL+++W+P
Sbjct: 311 RPLDGLFSIWHP 322


>gi|95929491|ref|ZP_01312234.1| signal peptide peptidase SppA, 36K type [Desulfuromonas acetoxidans
           DSM 684]
 gi|95134607|gb|EAT16263.1| signal peptide peptidase SppA, 36K type [Desulfuromonas acetoxidans
           DSM 684]
          Length = 298

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 75/274 (27%), Positives = 135/274 (49%), Gaps = 4/274 (1%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPG 77
           + L +     S      S  V  I + G I DS+ +++++    ++ +  A+++ + SPG
Sbjct: 23  IILIMSSSRGSGQKFALSDKVGVIEVLGTITDSKAIVDQLIDFGQNHAVKAIVLRVDSPG 82

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G     + I+  + ++   KPV+  +  +AAS GY IS  +N I A   ++ GSIGV+ +
Sbjct: 83  GGVGPSQEIYDEVVRLTALKPVVVSMGSVAASGGYYISAPANRIFANSGTITGSIGVIME 142

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +  V   +DK+G+    +KS   K   S    +  +   ++Q ++D  +  FV  VSE R
Sbjct: 143 FTNVIALMDKVGLKTNVIKSGDHKDIGSSVRAMTDQEKALLQSLIDDVHDQFVTAVSEGR 202

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           ++  D+   L+DGRI+TG +A++ GL+D +GG +        L   +    +     PK 
Sbjct: 203 HLEKDQVFKLADGRIFTGRQAQQQGLVDDLGGLQAAIHYAGELAGIEGTPDVLYPAEPKP 262

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
               DL +  IS    +   ++ +T  QGL  +W
Sbjct: 263 ----DLIDYFISRTASEIERVILKTDTQGLQLLW 292


>gi|148251723|ref|YP_001236308.1| S49 family peptidase [Bradyrhizobium sp. BTAi1]
 gi|146403896|gb|ABQ32402.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Bradyrhizobium sp. BTAi1]
          Length = 326

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 155/308 (50%), Gaps = 20/308 (6%)

Query: 5   LKKIKTRYVMLSLV-----TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIER 59
            K    R V + +       + +            S  +AR+ I G I    E +E +ER
Sbjct: 16  RKLTFWRVVAVLIAIAALSAIGLAMSPRGRTALSTSGSIARVNIEGLIRSDHERVEALER 75

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119
           +  + SA A+IV ++SPGG+    E ++ ++ ++K +KP++  V  +AAS GY+ + A++
Sbjct: 76  L-ENSSAEAVIVHINSPGGTTAGSEQLYDSLVRLKAKKPLVVVVEGLAASGGYIGAIAAD 134

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179
            IVA ++SLVGSIGVLFQYP V   L  +GV ++ VKSSP+KA P+ +   +P+A   + 
Sbjct: 135 HIVAQQSSLVGSIGVLFQYPNVSELLKTIGVKVEEVKSSPLKAAPNGYEPTSPEARAALD 194

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
            +V  SY WF  LV + R +       ++DGR++TG +A ++ LID +G ++     L A
Sbjct: 195 ALVKDSYAWFRGLVKDRRGMDDALLEKVADGRVFTGRQAIELKLIDELGDEKTAVAWLVA 254

Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL--------------EDTIPLMKQTKVQ 285
               +    ++D+     +        + S +L                 +  + +  + 
Sbjct: 255 NKNVKKDLPVRDYKLVPRFGDLTFLRTATSLVLNAVGLSGIAHQIEQAGVVQAVDRLGLD 314

Query: 286 GLWAVWNP 293
           G+ A+W P
Sbjct: 315 GMLALWTP 322


>gi|323136115|ref|ZP_08071198.1| signal peptide peptidase SppA, 36K type [Methylocystis sp. ATCC
           49242]
 gi|322399206|gb|EFY01725.1| signal peptide peptidase SppA, 36K type [Methylocystis sp. ATCC
           49242]
          Length = 323

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 87/279 (31%), Positives = 146/279 (52%), Gaps = 11/279 (3%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           FS     +  +PH+AR++++G I   ++ I+ I++I   + A AL++++ SPGG+    E
Sbjct: 40  FSDGDSADKLTPHIARLSLQGMITGDRDTIDLIKKIGDSNQARALLLTIESPGGTTTGSE 99

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            ++  +++V  +KPV+  V  +AAS  Y+ + A++ IVA   SLVGSIGVLFQ+P     
Sbjct: 100 KLYEELRRVSEKKPVVAVVGTLAASGAYIAALAADEIVARGNSLVGSIGVLFQFPNFYKL 159

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           LD  GV ++ VKSSP+KA P+ +   +  A   +  +V  SY WF  LV E RN+  ++ 
Sbjct: 160 LDSWGVKVEEVKSSPLKATPNGYEPTSEAAKAAIASLVSDSYAWFKNLVKERRNLSDEEL 219

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             +SDGR++T  +   + L+D +GG+ E    L           ++DW    +    +L 
Sbjct: 220 AKVSDGRVFTARQGLPLKLVDKIGGEREAVAWLETNKNIAKDLPVRDWKKKTSLERLNLV 279

Query: 265 NLSI-----------SSLLEDTIPLMKQTKVQGLWAVWN 292
             +            +  LE      +   + GL A+W 
Sbjct: 280 ESAAKMARAVGFDSFAGALEQVARAERGGSLDGLLAIWQ 318


>gi|227820608|ref|YP_002824578.1| signal peptide peptidase S49, SppA [Sinorhizobium fredii NGR234]
 gi|227339607|gb|ACP23825.1| signal peptide peptidase S49, SppA [Sinorhizobium fredii NGR234]
          Length = 319

 Score =  159 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 121/296 (40%), Positives = 186/296 (62%), Gaps = 10/296 (3%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66
           +     +++      + +  W+   E    HVAR+ + G I+D +EL+ER+ERI+ + SA
Sbjct: 20  RWTAAAILVLGGFALIAFSGWTEVSERAREHVARVTVSGVIQDDRELVERLERIADNKSA 79

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
            ALIV++SSPGG+ Y GE +++AI+KV  +KPV+++V  +AASAGY+I+ A + IVA ET
Sbjct: 80  KALIVTISSPGGTTYGGEVLYKAIRKVAAKKPVVSDVRTLAASAGYMIALAGDRIVAGET 139

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           S+ GSIGV+FQYP VK  +DK+GVS++S+KS P+KAEPSPF   +P+A  M+Q ++D SY
Sbjct: 140 SITGSIGVIFQYPQVKQLMDKVGVSLESIKSRPLKAEPSPFHPPSPEARAMIQTMIDDSY 199

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
           +WFV LV+E R +P  + L L+DGRI+TG +A +  L+D +GG +E+   L    V + +
Sbjct: 200 NWFVDLVAERRKLPRPEALALADGRIFTGRQALQGKLVDTIGGDDEIRAFLADRKVSKDL 259

Query: 247 RKIKDWNPPKNYWFCDLKNLS--ISSLLEDTIPLMKQTK--------VQGLWAVWN 292
             +    P  ++ F     +S  +  L  D  P M   +        + GL +VW 
Sbjct: 260 PVVDWEAPGGSFPFGLSTVVSNWLKLLGYDAFPAMNGLEKIGGDKLFLDGLVSVWQ 315


>gi|323702606|ref|ZP_08114268.1| signal peptide peptidase SppA, 36K type [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532425|gb|EGB22302.1| signal peptide peptidase SppA, 36K type [Desulfotomaculum
           nigrificans DSM 574]
          Length = 312

 Score =  159 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 132/303 (43%), Gaps = 19/303 (6%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV-----EDNSPHVARIAIRGQIEDS---------- 50
           K +    + L L++L                      V  I I G I  S          
Sbjct: 4   KLVVGLVIGLVLISLAAAIAIKGDTKIMAGKASTGEKVGVIHIEGTIVSSAPGGFGAGGV 63

Query: 51  ---QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEM 106
               E++  ++    +    A+I+ L++ GGS    + I R +++++   K V+  + EM
Sbjct: 64  AAADEIVANLKEARENPEIKAVILRLNTGGGSVVGSDEIGREVERLRRSGKKVVAVMGEM 123

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           AAS GY I+C ++ IVA   +  GSIGV+ Q   +K   +K+GV +++ K+ P K   + 
Sbjct: 124 AASGGYWIACKADKIVANPGTFTGSIGVIMQVTKMKELYNKIGVDVETFKTGPHKDMGAT 183

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
             ++ P+  ++ Q +V  SY  F+ +V+E R +   +   L+DGR++TG +AK +GL+D 
Sbjct: 184 GRDITPEERRIFQGLVQDSYDDFINVVAEGRKMDPARVRQLADGRVYTGKQAKALGLVDE 243

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +G   +  +    L   +   ++ +     N+    L  L     +              
Sbjct: 244 LGDFTDAVKLTARLANIKGEPELVEIGRRDNFLGDLLGGLQNQGKILPLPLEGLLLMPDP 303

Query: 287 LWA 289
             +
Sbjct: 304 ALS 306


>gi|307267146|ref|ZP_07548655.1| signal peptide peptidase SppA, 36K type [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|326390690|ref|ZP_08212244.1| signal peptide peptidase SppA, 36K type [Thermoanaerobacter
           ethanolicus JW 200]
 gi|306917831|gb|EFN48096.1| signal peptide peptidase SppA, 36K type [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|325993227|gb|EGD51665.1| signal peptide peptidase SppA, 36K type [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 304

 Score =  159 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 87/297 (29%), Positives = 150/297 (50%), Gaps = 16/297 (5%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQ---------ELI 54
           I   +++L + T+    F        +    S  +  I I G I ++          + +
Sbjct: 7   IGLIFIVLIISTVIASIFLTMPQENKSVPSVSNTIGVITIEGVIGETNILGIPQVTGDPV 66

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYL 113
           E+I +   D +  A++V ++SPGGSA     I+  ++++K   K VI  + + AAS GY+
Sbjct: 67  EQIRKAQEDSTVKAVVVKINSPGGSAAKSVEIYTELKRLKETGKKVIISMGDAAASGGYM 126

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
            +C  +IIVA   ++ GSIGV+ QY   +   DKLG+   ++KS P K   SP  ++ P+
Sbjct: 127 AACGGDIIVANPATITGSIGVIMQYTNYEGLYDKLGLKEITIKSGPYKDMGSPTRDLTPE 186

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
             +++Q V+D +Y  FV +VSE R +P DK   L+DGRI+TG +A KVGL+D +G   + 
Sbjct: 187 EKKILQGVIDDTYEQFVEIVSEGRKMPIDKVKELADGRIFTGRQALKVGLVDKLGDFYDA 246

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
                     Q    +K +  P N       + + S+L    + +++   +   W++
Sbjct: 247 VDIAAKEAGIQGKPVLKYYTTP-NPLSILFGSGAKSNLEGTGLEILRLLFIDK-WSL 301


>gi|308270374|emb|CBX26986.1| Putative protease slr0021 [uncultured Desulfobacterium sp.]
          Length = 297

 Score =  159 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 76/271 (28%), Positives = 129/271 (47%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
           F +    + +    L    +V+        +    V  + I G I +S+E+I  I++   
Sbjct: 10  FSVLVFSSIFFATILGVSILVFLGTRDPDFNMGEKVGVVEISGIITESKEIIRNIKKYRE 69

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           DDS  A+I+ + SPGG+    + IFR  +K    K +I  +   AAS GY I+  +N I+
Sbjct: 70  DDSIKAIILRIDSPGGAVGPSQEIFRETRKTIGIKKIIASMGTAAASGGYYIAAGTNGIM 129

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A   ++ GSIGV+  +   +  L K+G+    VKS   K   SP  ++  K  +++Q  V
Sbjct: 130 ANPGTITGSIGVIIGFTNFEEILQKIGLYSVVVKSGEYKDIGSPVRKMTEKEKKLLQTFV 189

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           D+++  FV  VS+ RN+   K   ++DGRI+TG  AK +GL+D +G  E+  +    LG 
Sbjct: 190 DNTHMQFVDAVSKGRNMDIAKVKAIADGRIFTGEMAKNLGLVDRLGNLEDAIEWAGRLGG 249

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273
            +            + +       S   ++ 
Sbjct: 250 IKGKISAVYSKKSDSSFLDYFVESSAKKIVS 280


>gi|225849949|ref|YP_002730183.1| signal peptide peptidase SppA, 36K type [Persephonella marina
           EX-H1]
 gi|225644848|gb|ACO03034.1| signal peptide peptidase SppA, 36K type [Persephonella marina
           EX-H1]
          Length = 275

 Score =  159 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 79/269 (29%), Positives = 144/269 (53%), Gaps = 5/269 (1%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63
           + KKI    V+  ++   + +FS+       +P +A I I G I D    I+ IE    D
Sbjct: 1   MKKKIAIGVVLFLIIIYLISFFSYR-----ATPKIAIIEIHGVISDFYSHIQNIESAESD 55

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
           DS  A+++S+ SPGG+  A + I+RAI++++ +KPV+  +  +AAS GY IS  +++I A
Sbjct: 56  DSIKAVVISVDSPGGTVGAAQEIYRAIERLRTKKPVVVSMGNVAASGGYYISAPASVIYA 115

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
              ++ GSIGV+ Q+  +   LDKLG+ ++++KS   K    P   ++P+  ++++D + 
Sbjct: 116 NPGTITGSIGVIIQHMDLSRVLDKLGIKVENIKSGKNKDILYPNKSLSPEQKKLIEDTIK 175

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
             Y  F+  +   R I  D+    +DGRI++G +AKK+ L+D +G  ++       L   
Sbjct: 176 DVYDQFLEAIVRYRPITKDQLRPYADGRIFSGRQAKKIKLVDKLGNIQDAVNEARKLAGL 235

Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
           +    +      +      L N  ++S++
Sbjct: 236 EDRHVVIIKLGKRKNILEKLLNSDMNSII 264


>gi|154246163|ref|YP_001417121.1| signal peptide peptidase SppA, 36K type [Xanthobacter autotrophicus
           Py2]
 gi|154160248|gb|ABS67464.1| signal peptide peptidase SppA, 36K type [Xanthobacter autotrophicus
           Py2]
          Length = 323

 Score =  159 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 90/279 (32%), Positives = 152/279 (54%), Gaps = 14/279 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
              V  +SPHVAR+ I G I + +  +E +E I R   A A+I+S+ SPGG+    E +F
Sbjct: 42  GDGVSASSPHVARVTIGGIIRNDRARVELLEEIGR-SRARAVILSIDSPGGTVTGSEQLF 100

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            A++++  +KPV+  V  +AAS  Y+ +  ++ IVA   +LVGS+GV++QYP V   L  
Sbjct: 101 DALRRLSEKKPVVAVVEGIAASGAYIAALGADHIVARRNALVGSVGVIYQYPNVTELLKT 160

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
           +GV+++ +KSSP+KA P+P++   P+A   ++ +V  SY WF  LVSE R +  DK   +
Sbjct: 161 VGVAMEDIKSSPLKASPNPYTPTTPEARAAVESLVKDSYAWFKGLVSERRKMSDDKLATV 220

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK-NYWFCDLKN- 265
           +DGR++TG +   + L+D +G +      L          K++ W   + +  F  L   
Sbjct: 221 TDGRVFTGHQGLDLQLVDELGDERTARAWLAREKGVPENLKVRSWRTREVDSEFGWLLGA 280

Query: 266 -----------LSISSLLEDTIPLMKQTKVQGLWAVWNP 293
                       +   L +     +++ ++ GL A+W+P
Sbjct: 281 ARGAVAALGFPQAAEFLTQTARGALERAQLDGLLALWHP 319


>gi|307942848|ref|ZP_07658193.1| proteinase IV protein [Roseibium sp. TrichSKD4]
 gi|307773644|gb|EFO32860.1| proteinase IV protein [Roseibium sp. TrichSKD4]
          Length = 335

 Score =  159 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 109/298 (36%), Positives = 164/298 (55%), Gaps = 12/298 (4%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66
           +I    ++   +   + Y S ++       H+ARI I G I D  EL++RIERI   D  
Sbjct: 22  RIAAFLILAIALISLIAYVSGAADASKKGSHIARIEIDGVITDDYELLQRIERIREHDPV 81

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
             +IV+++SPGGS   GEAI+ A++K+   KPV++E+    ASAGY+I+ A +  +A   
Sbjct: 82  KGVIVAINSPGGSTTGGEAIYSALRKLAEDKPVVSEIRTEGASAGYMIAMAGDHTIARYN 141

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           S+ GSIGVLFQY   K  LD +GV++ +VKSS +KAEP  +SE +P+A  M+  VV  SY
Sbjct: 142 SITGSIGVLFQYGNFKGLLDTIGVNMDAVKSSDLKAEPDFYSEASPEAKAMLAKVVKDSY 201

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
            WFV LV+E RN+  +  L L+DG I++G  A K+GLID +GG+E   Q L +       
Sbjct: 202 DWFVDLVAERRNMDRNAALKLADGSIYSGYTAHKLGLIDAIGGEEVAIQWLESEKDLSKD 261

Query: 247 RKIKDWNPPK---NYWFCDLKNLSISSLLEDTIPLMKQTK---------VQGLWAVWN 292
             +  W P +      F    + S    + + +    ++          + GL +VW 
Sbjct: 262 LPVITWRPEQTENGLPFVGAISRSFGIGVAEGLVGEAKSAKGLIPRGLTLDGLVSVWQ 319


>gi|283853641|ref|ZP_06370875.1| signal peptide peptidase SppA, 36K type [Desulfovibrio sp. FW1012B]
 gi|283570974|gb|EFC19000.1| signal peptide peptidase SppA, 36K type [Desulfovibrio sp. FW1012B]
          Length = 311

 Score =  158 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 70/285 (24%), Positives = 129/285 (45%), Gaps = 4/285 (1%)

Query: 10  TRYVMLSLVTLTVVYFSWSSHVE----DNSPHVARIAIRGQIEDSQELIERIERISRDDS 65
              +++  +T                   +  +  +AI G I D+  ++  I+++ +DDS
Sbjct: 23  AAVILVIGITAAFGLLGHDEEGGRLLGAATSRIGVVAIEGPITDADAVVAFIKKLRKDDS 82

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
              +I+ ++SPGG+    + ++ A++K+   KPV+     +AAS GY  +C ++ I A  
Sbjct: 83  VKGVILRVNSPGGAFGPSQEMYMAVKKLGAAKPVVASFSSVAASGGYYAACPASRIFANR 142

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
            ++ GSIGV+ Q+   +  L KLGV  +S+ +  +K   +PF  +       +  ++   
Sbjct: 143 GTITGSIGVMSQFANAQDLLQKLGVHFESLTTGKLKDAGTPFKPLTDDQRAYLAGLIADL 202

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
              F   V+  R +  D    ++DGR  TGA AK +GL+D +GGQEE    L        
Sbjct: 203 NQQFSGDVAAERKLGKDAIATIADGRAMTGARAKDLGLVDELGGQEEAVDYLKQQVGLTG 262

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
              +      K+  F  L +      ++    L   + + G  A+
Sbjct: 263 DVPLYKGPKKKSGLFDKLTSALSLPDMKGLALLSLVSGLSGETAL 307


>gi|134301011|ref|YP_001114507.1| signal peptide peptidase SppA, 36K type [Desulfotomaculum reducens
           MI-1]
 gi|134053711|gb|ABO51682.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Desulfotomaculum reducens MI-1]
          Length = 313

 Score =  158 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 76/307 (24%), Positives = 142/307 (46%), Gaps = 27/307 (8%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN------SPHVARIAIRGQIEDS------- 50
           + KKI T  V+  ++    V  +   +             +A + I G I  S       
Sbjct: 1   MRKKIITGIVIGVVLFSLAVAIALKGNGGKTAENTGVGEQIAVVHIEGTIMSSAPGGFGT 60

Query: 51  ------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEV 103
                   ++  ++    +    A+I+ L++ GG+    + I R +++V+   K V+  +
Sbjct: 61  AGVAAADRIVSELKEARENPEIKAVILKLNTGGGTVVGSDEIGREVERVRKSGKKVVAAM 120

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
            EMAAS GY ISC ++ IVA   +  GSIGV+ Q   +K   +KLGV + ++K+   K  
Sbjct: 121 GEMAASGGYWISCKADKIVANPGTFTGSIGVIMQLTEMKDLYNKLGVEVNNIKTGAFKDM 180

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
            +   +++P+  Q+ Q +V+ SY  F+++V+  R +   +   L+DGRI+TG +AK++GL
Sbjct: 181 GASNKDLSPEERQIFQGLVNDSYEDFIQVVAAGRKMDPTQVRKLADGRIYTGKQAKQLGL 240

Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
           +D +G   E  +    L   +   ++ D    +  W      L   +        +    
Sbjct: 241 VDELGDFNEAVRITANLAGIKGEPELVDMTGEQLLWQQLFGGLQGKN-------KILPIP 293

Query: 284 VQGLWAV 290
           ++GL  +
Sbjct: 294 LEGLLLL 300


>gi|161618142|ref|YP_001592029.1| signal peptide peptidase SppA, 36K type [Brucella canis ATCC 23365]
 gi|254705333|ref|ZP_05167161.1| signal peptide peptidase SppA, 36K type [Brucella suis bv. 3 str.
           686]
 gi|261756044|ref|ZP_05999753.1| signal peptide peptidase SppA [Brucella suis bv. 3 str. 686]
 gi|161334953|gb|ABX61258.1| signal peptide peptidase SppA, 36K type [Brucella canis ATCC 23365]
 gi|261745797|gb|EEY33723.1| signal peptide peptidase SppA [Brucella suis bv. 3 str. 686]
          Length = 327

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 104/281 (37%), Positives = 174/281 (61%), Gaps = 12/281 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             F      + N PH+A++ I G I +++EL++R+++I+ DD+   +I+ L SPGG+   
Sbjct: 36  FAFYSLRSAKFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLLDSPGGTTVG 95

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           GEAI+ A++K+  +KPV+T+V  +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + 
Sbjct: 96  GEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 155

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LD LGV ++++KSSP+KAEP+ FS  + +A  M++ ++  SY WFV +V E R   ++
Sbjct: 156 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRSMIMDSYDWFVGIVQERRAFTHE 215

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           + L L++G ++TG +A    LID +GG+ E    L   G+   + ++ +W P  +     
Sbjct: 216 QALALANGAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPRL-EWKPVGSETGFS 274

Query: 263 LKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292
           L++L I +        ++    +      +  + GL +VW+
Sbjct: 275 LRDLIIHAGARLLGLPQEADGAIKEIVRDRIFLDGLLSVWH 315


>gi|163842424|ref|YP_001626828.1| signal peptide peptidase SppA, 36K type [Brucella suis ATCC 23445]
 gi|189023406|ref|YP_001934174.1| Clp protease [Brucella abortus S19]
 gi|254690458|ref|ZP_05153712.1| signal peptide peptidase SppA [Brucella abortus bv. 6 str. 870]
 gi|254694947|ref|ZP_05156775.1| signal peptide peptidase SppA [Brucella abortus bv. 3 str. Tulya]
 gi|254696578|ref|ZP_05158406.1| signal peptide peptidase SppA [Brucella abortus bv. 2 str. 86/8/59]
 gi|254707153|ref|ZP_05168981.1| signal peptide peptidase SppA [Brucella pinnipedialis M163/99/10]
 gi|254709303|ref|ZP_05171114.1| signal peptide peptidase SppA [Brucella pinnipedialis B2/94]
 gi|254713274|ref|ZP_05175085.1| signal peptide peptidase SppA [Brucella ceti M644/93/1]
 gi|254716373|ref|ZP_05178184.1| signal peptide peptidase SppA [Brucella ceti M13/05/1]
 gi|254731491|ref|ZP_05190069.1| signal peptide peptidase SppA [Brucella abortus bv. 4 str. 292]
 gi|256030826|ref|ZP_05444440.1| signal peptide peptidase SppA [Brucella pinnipedialis M292/94/1]
 gi|256060296|ref|ZP_05450469.1| signal peptide peptidase SppA [Brucella neotomae 5K33]
 gi|256258714|ref|ZP_05464250.1| signal peptide peptidase SppA [Brucella abortus bv. 9 str. C68]
 gi|260169730|ref|ZP_05756541.1| signal peptide peptidase SppA [Brucella sp. F5/99]
 gi|260546428|ref|ZP_05822168.1| clp protease [Brucella abortus NCTC 8038]
 gi|260756010|ref|ZP_05868358.1| signal peptide peptidase SppA [Brucella abortus bv. 6 str. 870]
 gi|260759234|ref|ZP_05871582.1| signal peptide peptidase SppA [Brucella abortus bv. 4 str. 292]
 gi|260760956|ref|ZP_05873299.1| signal peptide peptidase SppA [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885030|ref|ZP_05896644.1| signal peptide peptidase SppA [Brucella abortus bv. 9 str. C68]
 gi|261215286|ref|ZP_05929567.1| signal peptide peptidase SppA [Brucella abortus bv. 3 str. Tulya]
 gi|261218155|ref|ZP_05932436.1| signal peptide peptidase SppA [Brucella ceti M13/05/1]
 gi|261314631|ref|ZP_05953828.1| signal peptide peptidase SppA [Brucella pinnipedialis M163/99/10]
 gi|261316812|ref|ZP_05956009.1| signal peptide peptidase SppA [Brucella pinnipedialis B2/94]
 gi|261320997|ref|ZP_05960194.1| signal peptide peptidase SppA [Brucella ceti M644/93/1]
 gi|261324268|ref|ZP_05963465.1| signal peptide peptidase SppA [Brucella neotomae 5K33]
 gi|261759268|ref|ZP_06002977.1| clp protease [Brucella sp. F5/99]
 gi|265987881|ref|ZP_06100438.1| signal peptide peptidase SppA [Brucella pinnipedialis M292/94/1]
 gi|163673147|gb|ABY37258.1| signal peptide peptidase SppA, 36K type [Brucella suis ATCC 23445]
 gi|189018978|gb|ACD71700.1| Clp protease [Brucella abortus S19]
 gi|260096535|gb|EEW80411.1| clp protease [Brucella abortus NCTC 8038]
 gi|260669552|gb|EEX56492.1| signal peptide peptidase SppA [Brucella abortus bv. 4 str. 292]
 gi|260671388|gb|EEX58209.1| signal peptide peptidase SppA [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676118|gb|EEX62939.1| signal peptide peptidase SppA [Brucella abortus bv. 6 str. 870]
 gi|260874558|gb|EEX81627.1| signal peptide peptidase SppA [Brucella abortus bv. 9 str. C68]
 gi|260916893|gb|EEX83754.1| signal peptide peptidase SppA [Brucella abortus bv. 3 str. Tulya]
 gi|260923244|gb|EEX89812.1| signal peptide peptidase SppA [Brucella ceti M13/05/1]
 gi|261293687|gb|EEX97183.1| signal peptide peptidase SppA [Brucella ceti M644/93/1]
 gi|261296035|gb|EEX99531.1| signal peptide peptidase SppA [Brucella pinnipedialis B2/94]
 gi|261300248|gb|EEY03745.1| signal peptide peptidase SppA [Brucella neotomae 5K33]
 gi|261303657|gb|EEY07154.1| signal peptide peptidase SppA [Brucella pinnipedialis M163/99/10]
 gi|261739252|gb|EEY27248.1| clp protease [Brucella sp. F5/99]
 gi|264660078|gb|EEZ30339.1| signal peptide peptidase SppA [Brucella pinnipedialis M292/94/1]
          Length = 327

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 104/281 (37%), Positives = 174/281 (61%), Gaps = 12/281 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             F      + N PH+A++ I G I +++EL++R+++I+ DD+   +I+ L SPGG+   
Sbjct: 36  FAFYSLRSAKFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLLDSPGGTTVG 95

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           GEAI+ A++K+  +KPV+T+V  +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + 
Sbjct: 96  GEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 155

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LD LGV ++++KSSP+KAEP+ FS  + +A  M++ ++  SY WFV +V E R   ++
Sbjct: 156 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRSMIMDSYDWFVGIVQERRAFTHE 215

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           + L L++G ++TG +A    LID +GG+ E    L   G+   + ++ +W P  +     
Sbjct: 216 QALALANGAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPRL-EWKPVGSETGFS 274

Query: 263 LKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292
           L++L I +        ++    +      +  + GL +VW+
Sbjct: 275 LRDLIIHAGARLLGLPQEADGAIKEIARDRIFLDGLLSVWH 315


>gi|306844422|ref|ZP_07477012.1| signal peptide peptidase SppA, 36K type [Brucella sp. BO1]
 gi|306275235|gb|EFM56985.1| signal peptide peptidase SppA, 36K type [Brucella sp. BO1]
          Length = 327

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 104/281 (37%), Positives = 176/281 (62%), Gaps = 12/281 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             F      + N PH+A++ I G I +++EL++R+++I+ DD+   +I+ L SPGG+   
Sbjct: 36  FAFYLLRGAKFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLLDSPGGTTVG 95

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           GEAI+ A++K+  +KPV+T+V  +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + 
Sbjct: 96  GEAIYDAVRKIAKKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 155

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LD LGV ++++KSSP+KAEP+ FS  + +A  M++ ++  SY WFV +V E R+  ++
Sbjct: 156 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRGMIMDSYDWFVGIVQERRSFTHE 215

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           + L L++G ++TG +A    LID +GG+ E    L   G+   + ++ +W P  +     
Sbjct: 216 QALALANGAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPRL-EWKPVGSETGFS 274

Query: 263 LKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292
           L++L I +        ++   ++      +  + GL +VW+
Sbjct: 275 LRDLIIHAGARLLGLPQEADGVIKEIARDRIFLDGLLSVWH 315


>gi|256112659|ref|ZP_05453580.1| signal peptide peptidase SppA, 36K type [Brucella melitensis bv. 3
           str. Ether]
 gi|265994099|ref|ZP_06106656.1| signal peptide peptidase SppA [Brucella melitensis bv. 3 str.
           Ether]
 gi|262765080|gb|EEZ11001.1| signal peptide peptidase SppA [Brucella melitensis bv. 3 str.
           Ether]
          Length = 327

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 105/281 (37%), Positives = 174/281 (61%), Gaps = 12/281 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             F      E N PH+A++ I G I +++EL++R+++I+ DD+   +I+ L SPGG+   
Sbjct: 36  FAFYSLRSAEFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLLDSPGGTTVG 95

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           GEAI+ A++K+  +KPV+T+V  +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + 
Sbjct: 96  GEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 155

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LD LGV ++++KSSP+KAEP+ FS  + +A  M++ ++  SY WFV +V E R   ++
Sbjct: 156 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRSMIMDSYDWFVGIVQERRAFTHE 215

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           + L L++G ++TG +A    LID +GG+ E    L   G+   + ++ +W P  +     
Sbjct: 216 QALALANGAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPRL-EWKPVGSETGFS 274

Query: 263 LKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292
           L++L I +        ++    +      +  + GL +VW+
Sbjct: 275 LRDLIIHAGARLLGLPQEADGAIKEIARDRIFLDGLLSVWH 315


>gi|225851687|ref|YP_002731920.1| signal peptide peptidase SppA, 36K type [Brucella melitensis ATCC
           23457]
 gi|256045946|ref|ZP_05448818.1| signal peptide peptidase SppA, 36K type [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256264800|ref|ZP_05467332.1| clp protease [Brucella melitensis bv. 2 str. 63/9]
 gi|260563227|ref|ZP_05833713.1| clp protease [Brucella melitensis bv. 1 str. 16M]
 gi|265992356|ref|ZP_06104913.1| signal peptide peptidase SppA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|225640052|gb|ACN99965.1| signal peptide peptidase SppA, 36K type [Brucella melitensis ATCC
           23457]
 gi|260153243|gb|EEW88335.1| clp protease [Brucella melitensis bv. 1 str. 16M]
 gi|263003422|gb|EEZ15715.1| signal peptide peptidase SppA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263095211|gb|EEZ18880.1| clp protease [Brucella melitensis bv. 2 str. 63/9]
 gi|326408176|gb|ADZ65241.1| signal peptide peptidase SppA, 36K type [Brucella melitensis M28]
          Length = 327

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 105/281 (37%), Positives = 174/281 (61%), Gaps = 12/281 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             F      E N PH+A++ I G I +++EL++R+++I+ DD+   +I+ L SPGG+   
Sbjct: 36  FAFYSLRSAEFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLLDSPGGTTVG 95

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           GEAI+ A++K+  +KPV+T+V  +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + 
Sbjct: 96  GEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 155

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LD LGV ++++KSSP+KAEP+ FS  + +A  M++ ++  SY WFV +V E R   ++
Sbjct: 156 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRSMIMDSYDWFVGIVQERRAFTHE 215

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           + L L++G ++TG +A    LID +GG+ E    L   G+   + ++ +W P  +     
Sbjct: 216 QALALANGAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPRL-EWKPVGSETGFS 274

Query: 263 LKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292
           L++L I +        ++    +      +  + GL +VW+
Sbjct: 275 LRDLIIHAGARLLGLPQEADGAIKEIARDRIFLDGLLSVWH 315


>gi|86356057|ref|YP_467949.1| proteinase IV protein [Rhizobium etli CFN 42]
 gi|86280159|gb|ABC89222.1| proteinase IV protein [Rhizobium etli CFN 42]
          Length = 316

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 114/300 (38%), Positives = 180/300 (60%), Gaps = 13/300 (4%)

Query: 5   LKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
            K    R V ++L+      F           SPH+A + I G I D  EL+ER++++  
Sbjct: 14  RKLGFWRIVAVALIVALGFAFYRFALGEAGTASPHIAHVTISGLIVDDDELLERLKKVET 73

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
            +   A ++S+SSPGG+ Y GE IF AI+ +  +KPV+++V  +AASAGY+I+ A + I+
Sbjct: 74  SNQVKAAVISISSPGGTTYGGEKIFNAIRAISAKKPVVSDVRTLAASAGYMIATAGDTII 133

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A ++S+ GSIGV+FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A  M++++V
Sbjct: 134 AGDSSITGSIGVIFQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKAMIRNMV 193

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             SY+WFV LV+E R +P ++ L L+DG I+TG +A +  L+D +GG+ E+   L + GV
Sbjct: 194 VDSYNWFVDLVAERRKLPREEVLKLADGTIYTGRQALQAKLVDTIGGEAEIRAYLQSRGV 253

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ----------TKVQGLWAVWN 292
           D  +  + DW+   N  F     +S    +     L++             + GL +VW 
Sbjct: 254 DADLPMV-DWDKKSNTPFLLAGAVSRLVTILGYDDLIRGQDINGILPPKLLLDGLLSVWQ 312


>gi|120601287|ref|YP_965687.1| signal peptide peptidase SppA, 36K type [Desulfovibrio vulgaris
           DP4]
 gi|120561516|gb|ABM27260.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Desulfovibrio vulgaris DP4]
          Length = 296

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/275 (25%), Positives = 136/275 (49%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
           F+   +     +      T  +   +       P +  + I G I D+++ +E + +++ 
Sbjct: 15  FIFGFLLIMVAVALFTGATATFRHLTDAGSFGGPRIGIVRIEGMIGDARKTLEWMRKLAE 74

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           D +   ++V + SPGG+    + +  A++++   KPV+  +  +AAS G ++S  +  IV
Sbjct: 75  DRTVRGVLVRVDSPGGAVAPSQELHDAVKRLAADKPVVVSMGSLAASGGLMVSTGATRIV 134

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A   ++ GSIGV  + P V+  +DKLGV+ +++ S  +K   SPF  ++       Q ++
Sbjct: 135 ANPATITGSIGVKMEMPNVQGLMDKLGVARQTLVSGDLKDAGSPFRAMSEAERAYFQSII 194

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              Y  FV +++E RNIP +K    +DGRI TG++A ++GL+D +G +      L AL  
Sbjct: 195 MEMYGQFVSMIAEDRNIPVEKVRSFADGRILTGSQALELGLVDKLGSEAAAMDVLLALVD 254

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
            +  + +    P +  W  ++   ++       + 
Sbjct: 255 LKGEKPVFIEPPKERSWVREVLESALGIAPPQNMG 289


>gi|23501065|ref|NP_697192.1| signal peptide peptidase SppA [Brucella suis 1330]
 gi|62289130|ref|YP_220923.1| signal peptide peptidase SppA [Brucella abortus bv. 1 str. 9-941]
 gi|82699069|ref|YP_413643.1| Clp protease [Brucella melitensis biovar Abortus 2308]
 gi|148560143|ref|YP_001258187.1| signal peptide peptidase SppA [Brucella ovis ATCC 25840]
 gi|225626693|ref|ZP_03784732.1| signal peptide peptidase SppA, 36K type [Brucella ceti str. Cudo]
 gi|237814624|ref|ZP_04593622.1| signal peptide peptidase SppA, 36K type [Brucella abortus str. 2308
           A]
 gi|256368618|ref|YP_003106124.1| signal peptide peptidase SppA [Brucella microti CCM 4915]
 gi|297247546|ref|ZP_06931264.1| protease IV [Brucella abortus bv. 5 str. B3196]
 gi|23346932|gb|AAN29107.1| signal peptide peptidase SppA [Brucella suis 1330]
 gi|62195262|gb|AAX73562.1| SppA, signal peptide peptidase SppA [Brucella abortus bv. 1 str.
           9-941]
 gi|82615170|emb|CAJ10109.1| Clp protease:Peptidase U7:Signal peptide peptidase, SppA 36 kDa
           type [Brucella melitensis biovar Abortus 2308]
 gi|148371400|gb|ABQ61379.1| signal peptide peptidase SppA [Brucella ovis ATCC 25840]
 gi|225618350|gb|EEH15393.1| signal peptide peptidase SppA, 36K type [Brucella ceti str. Cudo]
 gi|237789461|gb|EEP63671.1| signal peptide peptidase SppA, 36K type [Brucella abortus str. 2308
           A]
 gi|255998776|gb|ACU47175.1| signal peptide peptidase SppA [Brucella microti CCM 4915]
 gi|297174715|gb|EFH34062.1| protease IV [Brucella abortus bv. 5 str. B3196]
          Length = 331

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 104/281 (37%), Positives = 174/281 (61%), Gaps = 12/281 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             F      + N PH+A++ I G I +++EL++R+++I+ DD+   +I+ L SPGG+   
Sbjct: 40  FAFYSLRSAKFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLLDSPGGTTVG 99

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           GEAI+ A++K+  +KPV+T+V  +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + 
Sbjct: 100 GEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 159

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LD LGV ++++KSSP+KAEP+ FS  + +A  M++ ++  SY WFV +V E R   ++
Sbjct: 160 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRSMIMDSYDWFVGIVQERRAFTHE 219

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           + L L++G ++TG +A    LID +GG+ E    L   G+   + ++ +W P  +     
Sbjct: 220 QALALANGAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPRL-EWKPVGSETGFS 278

Query: 263 LKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292
           L++L I +        ++    +      +  + GL +VW+
Sbjct: 279 LRDLIIHAGARLLGLPQEADGAIKEIARDRIFLDGLLSVWH 319


>gi|326537889|gb|ADZ86104.1| signal peptide peptidase SppA, 36K type [Brucella melitensis M5-90]
          Length = 331

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 105/281 (37%), Positives = 174/281 (61%), Gaps = 12/281 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             F      E N PH+A++ I G I +++EL++R+++I+ DD+   +I+ L SPGG+   
Sbjct: 40  FAFYSLRSAEFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLLDSPGGTTVG 99

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           GEAI+ A++K+  +KPV+T+V  +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + 
Sbjct: 100 GEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 159

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LD LGV ++++KSSP+KAEP+ FS  + +A  M++ ++  SY WFV +V E R   ++
Sbjct: 160 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRSMIMDSYDWFVGIVQERRAFTHE 219

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           + L L++G ++TG +A    LID +GG+ E    L   G+   + ++ +W P  +     
Sbjct: 220 QALALANGAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPRL-EWKPVGSETGFS 278

Query: 263 LKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292
           L++L I +        ++    +      +  + GL +VW+
Sbjct: 279 LRDLIIHAGARLLGLPQEADGAIKEIARDRIFLDGLLSVWH 319


>gi|306842559|ref|ZP_07475210.1| signal peptide peptidase SppA, 36K type [Brucella sp. BO2]
 gi|306287415|gb|EFM58895.1| signal peptide peptidase SppA, 36K type [Brucella sp. BO2]
          Length = 327

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 106/281 (37%), Positives = 177/281 (62%), Gaps = 12/281 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             F      + N PH+A++ I G I +++EL++R++RI+ DD+   +I+ L SPGG+   
Sbjct: 36  FAFYSLRGAKFNQPHIAKVRIEGTIFENEELLKRLDRIAGDDAVKGVILLLDSPGGTTVG 95

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           GEAI+ A++K+  +KPV+T+V  +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + 
Sbjct: 96  GEAIYDAVRKIAKKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 155

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LD LGV ++++KSSP+KAEP+ FS  + +A  M++D++  SY WFV +V E R+  ++
Sbjct: 156 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRDMIMDSYDWFVGIVQERRSFTHE 215

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           + L L++G ++TG +A    LID +GG+ E    L   G+   + ++ +W P  +     
Sbjct: 216 QALALANGAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPRL-EWKPAGSETGFS 274

Query: 263 LKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292
           L++L I +        ++   ++      +  + GL +VW+
Sbjct: 275 LRDLIIHAGARLLGLPQEADGVIKEIARDRIFLDGLLSVWH 315


>gi|148264332|ref|YP_001231038.1| signal peptide peptidase SppA, 36K type [Geobacter uraniireducens
           Rf4]
 gi|146397832|gb|ABQ26465.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Geobacter uraniireducens Rf4]
          Length = 298

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 137/272 (50%), Gaps = 10/272 (3%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWS----------SHVEDNSPHVARIAIRGQIEDSQELIER 56
           KIK     L++V L  ++F  S                   +  + ++G I DSQE +++
Sbjct: 2   KIKWLLFGLAVVMLIFIFFVASLYIATTITGEKTDFVGKEGIGLVEVKGIILDSQETVKQ 61

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116
           +    ++++  A+++ + SPGG     + I+ A++K+  +K V+  +  +AAS GY I+ 
Sbjct: 62  LFDFKKNENVKAVVLRIESPGGVVGPSQEIYDAVKKLALKKKVVVSMGSVAASGGYYIAA 121

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
            +  I A   ++ GSIGVL ++  ++  +DK+G+   ++K+   K   SP   ++ +   
Sbjct: 122 PATKIFANPGTITGSIGVLMKFSNIEGLMDKIGMKAFTIKTGKYKDVGSPVRTMSVEDKA 181

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           M+Q V+DS++  FV+ V+E R +P ++   L+DGRI++G +A  + L+D +G  ++  + 
Sbjct: 182 MLQGVIDSTHGQFVKAVAEGRKLPLEQVKTLADGRIYSGEQALALKLVDNLGTMQDAIEE 241

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
              L   +    +      K      L   + 
Sbjct: 242 AGKLAGIKGEPHVITPPKKKKVLLDILMEETA 273


>gi|222084667|ref|YP_002543196.1| proteinase IV protein [Agrobacterium radiobacter K84]
 gi|221722115|gb|ACM25271.1| proteinase IV protein [Agrobacterium radiobacter K84]
          Length = 318

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 115/295 (38%), Positives = 176/295 (59%), Gaps = 16/295 (5%)

Query: 11  RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALI 70
             ++L  +   +  F  +   +   P +AR+AI G I+D  EL+ER+++I  +D   ALI
Sbjct: 23  AVLLLVGLGFALYRFFAADLPDTRGPQIARVAISGLIQDDSELLERLKKIKDNDQVKALI 82

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           VS+SS GG+ Y GE IF+AI+ V  +KPV++++  +AASAGY+I+ A + IVA +TS+ G
Sbjct: 83  VSISSTGGTTYGGERIFKAIRAVAAKKPVVSDIRTVAASAGYMIATAGDDIVAGDTSITG 142

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+FQYP  K  LDKLGVS++ +KSSPMKAEPSPF   +  A  M++++V  SY WFV
Sbjct: 143 SIGVIFQYPQAKDLLDKLGVSLEDIKSSPMKAEPSPFHPPSEDAKNMIRNMVMDSYGWFV 202

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
            LV++ R +P ++ L L+DG I+TG +A +  LID +GG++E+   L    V++ +  I 
Sbjct: 203 DLVADRRKLPREEVLKLADGSIFTGRQALQNKLIDTLGGEDEIRAYLDTRKVNKDLP-IV 261

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIP-------------LMKQTKVQGLWAVWN 292
           DW                +S L +                + ++  + GL +VW 
Sbjct: 262 DWKAENKTSSFFWPG--AASWLLNLFGYDDFVKGEGFQKMMTEKLFLDGLLSVWQ 314


>gi|254700963|ref|ZP_05162791.1| signal peptide peptidase SppA [Brucella suis bv. 5 str. 513]
 gi|261751481|ref|ZP_05995190.1| signal peptide peptidase SppA [Brucella suis bv. 5 str. 513]
 gi|261741234|gb|EEY29160.1| signal peptide peptidase SppA [Brucella suis bv. 5 str. 513]
          Length = 327

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 104/281 (37%), Positives = 173/281 (61%), Gaps = 12/281 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             F      + N PH+A++ I G I +++EL++R+++I+ DD+   +I+ L SPGG+   
Sbjct: 36  FAFYSLRSAKFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLLDSPGGTTVG 95

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           GEAI+ A++K+  +KPV+T+V  +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + 
Sbjct: 96  GEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 155

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LD LGV ++++KSSP+KAEP+ FS  + +A  M++ ++  SY WFV +V E R   ++
Sbjct: 156 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRSMIMDSYDWFVGIVQERRAFTHE 215

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           + L L++G ++TG +A    LID +GG+ E    L   G+   +  + +W P  +     
Sbjct: 216 QALALANGAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPHL-EWKPVGSETGFS 274

Query: 263 LKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292
           L++L I +        ++    +      +  + GL +VW+
Sbjct: 275 LRDLIIHAGARLLGLPQEADGAIKEIARDRIFLDGLLSVWH 315


>gi|296116410|ref|ZP_06835024.1| signal peptide peptidase SppA, 36K type [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977003|gb|EFG83767.1| signal peptide peptidase SppA, 36K type [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 314

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 84/290 (28%), Positives = 151/290 (52%), Gaps = 7/290 (2%)

Query: 11  RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISRDDSATAL 69
              M +   L +          D   H+ R+ I G +  D+ + +  I R   + +   +
Sbjct: 25  AVAMFACGLLAISGRGIWGARGDGRDHLVRLRIDGVVGSDTTDTLALIRRARSNPAVKGM 84

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           ++ +++PGG+   GE +  AI +   +KPV   +  +AASAGY+I+  +  + A  ++L 
Sbjct: 85  LLDINTPGGAVTGGETLHDAIAEFARQKPVAVSMGSLAASAGYMIAVPAQRLFAHHSTLT 144

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+ Q P V   LDK+GV +  + S PMK +PS    ++P+  +M+Q V+   Y  F
Sbjct: 145 GSIGVIMQAPDVSGLLDKVGVRVDQLVSGPMKGQPSAVQPLSPQGREMLQGVIADLYDMF 204

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V +V++ R++P +K L L+DGR +TG++A  +GL+D +GG+EE  + L           +
Sbjct: 205 VTMVAQGRHLPREKVLELADGRPYTGSQALSLGLVDQIGGEEEAKEWLIRTLHLSETVDV 264

Query: 250 KDWNPPKNYWFCDLKNLSISSLL----EDTIPLMKQTK--VQGLWAVWNP 293
           +D  P  ++    +++L  S +      D +  + +    + G  A+W P
Sbjct: 265 EDMKPRPSFHLDWMRHLLGSVMGIVAESDRLDGLFRPGGDLDGAVAIWKP 314


>gi|288817557|ref|YP_003431904.1| signal peptide peptidase [Hydrogenobacter thermophilus TK-6]
 gi|288786956|dbj|BAI68703.1| signal peptide peptidase [Hydrogenobacter thermophilus TK-6]
 gi|308751159|gb|ADO44642.1| signal peptide peptidase SppA, 36K type [Hydrogenobacter
           thermophilus TK-6]
          Length = 278

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/272 (27%), Positives = 143/272 (52%), Gaps = 5/272 (1%)

Query: 11  RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALI 70
           R++++ ++ ++V+              +A + + G I D++ +I++IE+  +DDS  AL+
Sbjct: 3   RFILVLILLVSVMVIGSLLSRIPVGNRIAVLKVEGIIIDAEPVIKKIEKAKKDDSIKALV 62

Query: 71  VSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + + SPGGS  A + I+RA+++   ++KP++  +  +AAS GY IS  ++ I A   ++ 
Sbjct: 63  LRVDSPGGSVGASQEIYRALERFKDSKKPLVVSMGNVAASGGYYISVPADYIYANPGTIT 122

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+ ++   +  L +LGV   ++K+   K   SPF E+  +  + ++  +D +Y  F
Sbjct: 123 GSIGVIIEHIDYRELLSRLGVKATAIKTGKFKDTLSPFRELTDEEREYLKKTIDDAYGQF 182

Query: 190 VRLVSESR--NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           +  + + R   I  D+   ++DGRI TG  A+KVGL+D +G  E+       L   +  R
Sbjct: 183 LSSILKYRSKKISEDELRSIADGRIMTGLMAQKVGLVDGLGNIEDAIDKAKELAGVKEAR 242

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
               +   +  +   L    + S   +  P M
Sbjct: 243 --VFYMEERKSFLRRLLGAKLPSFDLNYYPTM 272


>gi|116250187|ref|YP_766025.1| peptidase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254835|emb|CAK05909.1| putative peptidase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 327

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 117/300 (39%), Positives = 182/300 (60%), Gaps = 13/300 (4%)

Query: 5   LKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
            K    R + ++L+      F            PH+A + I G I D  EL+ER++++  
Sbjct: 25  RKLGFWRLIAVALIVALGFAFYRFALGDAGTQRPHIAHVTISGLIVDDDELLERLKKVET 84

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
            D   A ++S+SSPGG+ Y GE IF+AI+ +  +KPV+++V  +AASAGY+I+ A + I+
Sbjct: 85  SDQVKAAVISISSPGGTTYGGEKIFKAIRAISAKKPVVSDVRTLAASAGYMIATAGDTII 144

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A ++S+ GSIGV+FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A  M++++V
Sbjct: 145 AGDSSITGSIGVIFQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKTMIRNMV 204

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             SY+WFV LV++ R +P D+ L L+DG I+TG +A KV L+D +GG+ E+   L + GV
Sbjct: 205 VDSYNWFVDLVADRRKLPRDEVLKLADGTIYTGRQALKVKLVDAIGGEAEIRAYLTSRGV 264

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK----------QTKVQGLWAVWN 292
           D  +  + DW+   N  F     +S    +     LMK          +  + GL +VW 
Sbjct: 265 DSDLPMV-DWDKKSNTPFLLAGAVSRLITIFGYDDLMKTQDINGILPPKLLLDGLLSVWQ 323


>gi|220922181|ref|YP_002497482.1| signal peptide peptidase SppA, 36K type [Methylobacterium nodulans
           ORS 2060]
 gi|219946787|gb|ACL57179.1| signal peptide peptidase SppA, 36K type [Methylobacterium nodulans
           ORS 2060]
          Length = 321

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 99/297 (33%), Positives = 159/297 (53%), Gaps = 13/297 (4%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVEDN-----SPHVARIAIRGQIEDSQELIERIERISRD 63
             R V +  + +      W +          +P +ARI+I G I  S++  E ++R+   
Sbjct: 20  FWRVVGIGALIVAAGAVGWRAAGARGPFPAITPQIARISIDGFIAGSEKTRELMKRVGDS 79

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
            + + +IVS++SPGG+    E +FR ++++  +KPV+  V   AAS  Y+ + A++ IVA
Sbjct: 80  SAVSGVIVSINSPGGTTTGSEELFRNLRQLAEKKPVVAFVDGTAASGAYITALAADHIVA 139

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
            ETSLVGSIGVLFQYP +   LDK+GV ++ VKSSP+KAEPS F   +P+    +Q +V 
Sbjct: 140 RETSLVGSIGVLFQYPDLSGLLDKVGVRVEQVKSSPLKAEPSGFHPTSPEGRAALQAIVG 199

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
            +Y WF  LV+E R +   +   +SDGR+++G +  ++ L+D  G + +    L      
Sbjct: 200 DTYVWFKNLVAERRKLTPAELGAVSDGRVFSGRQGVELKLVDETGSERQAVAWLERERKV 259

Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ-------GLWAVWNP 293
                I+DW P  +  F      S+   LE+    +++T          GL A+W P
Sbjct: 260 AKDLPIRDWKPRSDRTFNLFSAASL-LGLEEVAGRLRRTTEDAAALAQGGLLALWRP 315


>gi|121535672|ref|ZP_01667477.1| signal peptide peptidase SppA, 36K type [Thermosinus
           carboxydivorans Nor1]
 gi|121305776|gb|EAX46713.1| signal peptide peptidase SppA, 36K type [Thermosinus
           carboxydivorans Nor1]
          Length = 308

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 138/285 (48%), Gaps = 16/285 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------QEL 53
            +    V++SLV    +     +        VA I I G I                 ++
Sbjct: 8   YVIAAVVLVSLVGAAFIIPGLKTKGAAAQGKVAVIYIDGVIIGGRGQSALLAEYGGTDDI 67

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGY 112
           + ++     D +  A+++ ++SPGGSA A + +   ++K++   K V+T + ++AAS GY
Sbjct: 68  MRQLHEARDDAAVRAVVLRINSPGGSAPASQEVGEEVKKLRAAGKIVVTSMGDVAASGGY 127

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            I+  ++ I A   ++ GSIGV   Y   +    K+G+  + +KS P K   SP   +  
Sbjct: 128 WIAALTDKIYANPATMTGSIGVYIPYANWEELYRKIGIRQEKIKSGPHKDILSPERSMTG 187

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
           +   ++Q +VD  Y+ FV +V+E R +   +   L+DGRI+TG +AK++GL+D +G   +
Sbjct: 188 EERAIIQAMVDDMYNQFVAVVAEGRKMDPARVRQLADGRIYTGNQAKELGLVDELGNLYD 247

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
                  L   +   ++ ++   K+  +  L +L   +LLE  + 
Sbjct: 248 AIDGAARLAGIKGKPQVIEYG--KHSPWDYLLSLRAPTLLEKVLQ 290


>gi|209883626|ref|YP_002287483.1| protease IV [Oligotropha carboxidovorans OM5]
 gi|209871822|gb|ACI91618.1| protease IV [Oligotropha carboxidovorans OM5]
          Length = 326

 Score =  157 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 89/302 (29%), Positives = 157/302 (51%), Gaps = 15/302 (4%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDS 65
           + I    V+ +++ LT      +      S  +AR+ I G I  + E +  +ER+ +   
Sbjct: 22  RAISALVVIAAVIGLTAALAPSARQAITGSEAIARVKIEGLIRSNDERVAALERLGK-SK 80

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
           A A+IV ++SPGG+    E +F A+ ++K +KP++  V  +AAS GY+ + AS+ I+A +
Sbjct: 81  AAAVIVHINSPGGTTAGAEQLFDALTRLKAKKPLVVVVEGLAASGGYIAALASDHIIAQQ 140

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
           TSLVGSIGVLFQ+P     L  +GV ++ VKS+P+KA P+ +   +P+A   +  +V  S
Sbjct: 141 TSLVGSIGVLFQFPNFSELLKTVGVKVEEVKSAPLKAAPNGYEPTSPEARAALDALVKDS 200

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           + WF  LV   R +      V+SDGR++TG +A  + LID +G ++   + L A    + 
Sbjct: 201 FAWFKGLVKTRRQMDEAALQVVSDGRVFTGRQAVGLKLIDELGDEKTAVKWLQAQNKIKG 260

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDT--------------IPLMKQTKVQGLWAVW 291
              ++D+     +        +  + L                   + ++ +++G+ A+W
Sbjct: 261 ELPVRDYKLSPRFSDMTFLRTATEATLRALGLETFARIVGGSGVGGVAERLELEGMLALW 320

Query: 292 NP 293
            P
Sbjct: 321 QP 322


>gi|209547656|ref|YP_002279573.1| signal peptide peptidase SppA, 36K type [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209533412|gb|ACI53347.1| signal peptide peptidase SppA, 36K type [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 316

 Score =  157 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 117/300 (39%), Positives = 183/300 (61%), Gaps = 13/300 (4%)

Query: 5   LKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
            K    R V ++L+    + F      +     PH+A + I G I D  EL+ER++++  
Sbjct: 14  RKLGFWRIVAVALIVALGLAFYSFAFGNAGTERPHIAHVTISGLIVDDDELLERLKKVET 73

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
            D   A ++S+SSPGG+ Y GE IF+AI+ +  +KPV+++V  +AASAGY+I+ A + I+
Sbjct: 74  SDQVKAAVISISSPGGTTYGGEKIFKAIRAIAAKKPVVSDVRTLAASAGYMIATAGDTII 133

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A ++S+ GSIGV+FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A  M++++V
Sbjct: 134 AGDSSITGSIGVIFQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKAMIRNMV 193

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             SY+WFV LV++ R +P D+ L L+DG I+TG +A KV L+D +GG+ E+   L + GV
Sbjct: 194 VDSYNWFVDLVADRRKLPRDEVLKLADGTIYTGRQALKVKLVDTIGGEPEIRAYLKSRGV 253

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ----------TKVQGLWAVWN 292
           D  +  + DW+   N  F     +S    +     L+K             + GL +VW 
Sbjct: 254 DADLPMV-DWDKKSNTPFLLAGAVSRLITIFGYDDLLKGQDINGILPPKLLLDGLLSVWQ 312


>gi|256158851|ref|ZP_05456708.1| Clp protease [Brucella ceti M490/95/1]
 gi|256254232|ref|ZP_05459768.1| Clp protease [Brucella ceti B1/94]
 gi|261221381|ref|ZP_05935662.1| signal peptide peptidase SppA [Brucella ceti B1/94]
 gi|265997342|ref|ZP_06109899.1| signal peptide peptidase SppA [Brucella ceti M490/95/1]
 gi|260919965|gb|EEX86618.1| signal peptide peptidase SppA [Brucella ceti B1/94]
 gi|262551810|gb|EEZ07800.1| signal peptide peptidase SppA [Brucella ceti M490/95/1]
          Length = 327

 Score =  157 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 104/281 (37%), Positives = 174/281 (61%), Gaps = 12/281 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             F      + N PH+A++ I G I +++EL++R+++I+ DD+   +I+ L SPGG+   
Sbjct: 36  FAFYSLRSAKFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLLDSPGGTTVG 95

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           GEAI+ A++K+  +KPV+T+V  +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + 
Sbjct: 96  GEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 155

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LD LGV ++++KSSP+KAEP+ FS  + +A  M++ ++  SY WFV +V E R   ++
Sbjct: 156 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRSMIMDSYDWFVGIVQERRAFTHE 215

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           + L L++G ++TG +A    LID +GG+ E    L   G+   + ++ +W P  +     
Sbjct: 216 QALALANGAVFTGRQALDKKLIDSLGGEAEAVAWLQTKGLSDKLPRL-EWKPVGSETGFS 274

Query: 263 LKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292
           L++L I +        ++    +      +  + GL +VW+
Sbjct: 275 LRDLIIHAGARLLGLPQEADGAIKEIARDRIFLDGLLSVWH 315


>gi|251772979|gb|EES53536.1| Peptidase S49 (SppA) [Leptospirillum ferrodiazotrophum]
          Length = 296

 Score =  157 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 136/294 (46%), Gaps = 14/294 (4%)

Query: 4   VLKKIKTRYVMLSLVTLTVVY------FSWSSHVEDNSPHVARIAIRGQIEDSQELIERI 57
           + KKI   + ++ +V   +        F   S        +  + I G I  S++ I +I
Sbjct: 2   LFKKIFRAFFVIVVVLGILFVLGRGAAFFSRSVPIVGGAEIGVVRISGVILSSRKPIRQI 61

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISC 116
             ++RD    A+++ + SPGG+    + I+  + K +   KPVI  +  + AS  Y I+ 
Sbjct: 62  RALARDPRVKAILLRIDSPGGAVVPSQDIYEEVMKARKSGKPVIASIGTVGASGAYYIAS 121

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
           A + I+A+  SL GSIGV+ +    +  + K+GV  + +KS  +K   SPF  + P+   
Sbjct: 122 ACDRIIASPGSLTGSIGVIMELAQFEDLMKKIGVQSEVMKSGSLKDAGSPFRPMTPEEKA 181

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
            +Q V+D  +  F+R V++ R++       L+DGR++TGA A    L+D +G   +    
Sbjct: 182 YLQSVLDEMHRQFIRDVAKGRHLQVSAIEPLADGRVFTGASAIGNHLVDSLGDYNDALDE 241

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
              +        ++ +  P+  +   + +  +  L E         +  G W+V
Sbjct: 242 AAKMAHISGKPVVRRF--PEKSFLDKMVSSQVGHLWE-----TLGKESFGFWSV 288


>gi|218528184|ref|YP_002419000.1| signal peptide peptidase SppA, 36K type [Methylobacterium
           chloromethanicum CM4]
 gi|218520487|gb|ACK81072.1| signal peptide peptidase SppA, 36K type [Methylobacterium
           chloromethanicum CM4]
          Length = 321

 Score =  157 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 95/272 (34%), Positives = 150/272 (55%), Gaps = 9/272 (3%)

Query: 31  VEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
                  +ARI+I G I  S+   + IER+   ++   +++S+SSPGG+    E ++R +
Sbjct: 48  FPATENQIARISIGGFIAGSESTRKLIERVGESNAVKGVVISISSPGGTTTGSEELYRNL 107

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           + +  +KP++  V   AAS  Y+ + A++ IVA ET+LVGSIGVLFQYP V   LDK+GV
Sbjct: 108 RALAAKKPMVAFVDGTAASGAYITAIAADHIVARETALVGSIGVLFQYPDVSGLLDKVGV 167

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
            ++SVKSSP+KAEPS FS  +P+A   +  +V  +Y WF  LV+E R +   +   ++DG
Sbjct: 168 KVESVKSSPLKAEPSGFSPTSPEARAALSSIVLDTYGWFKGLVAERRGMDESQIAAVADG 227

Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270
           R+++G ++  + L+D +GG+ +    L           +KDW P  +  F     L + +
Sbjct: 228 RVFSGRQSLPLKLVDELGGERQAVAWLEKEKKVPEKLPVKDWKPKADGGFKLWSTLGLGA 287

Query: 271 LLEDTIPLMKQTKV---------QGLWAVWNP 293
            L     L  + +           GL AVW P
Sbjct: 288 DLLGLEGLASRLRAVEDEAAGLSGGLLAVWRP 319


>gi|115522478|ref|YP_779389.1| signal peptide peptidase SppA, 36K type [Rhodopseudomonas palustris
           BisA53]
 gi|115516425|gb|ABJ04409.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49
           [Rhodopseudomonas palustris BisA53]
          Length = 324

 Score =  157 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 87/279 (31%), Positives = 148/279 (53%), Gaps = 11/279 (3%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
            S +  +  +S  +AR+ I G I   Q+ +E  ER+ +  SA A++V ++SPGG+    E
Sbjct: 42  SSGTMSLAGSSGSIARVKIDGLIRSDQDRVEAFERLEK-SSAAAVVVHINSPGGTTAGSE 100

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            ++ A+ ++K +KP++  V  +AAS GY+ + AS+ I+A ++SLVGSIGVLFQYP     
Sbjct: 101 QLYDALMRLKAKKPLVVVVEGLAASGGYIAALASDQIIARQSSLVGSIGVLFQYPNFSEL 160

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           +  +GV ++ VKSSP+KA P+ F   +P+A   +  +V  SY WF  LV + R +   + 
Sbjct: 161 MKTVGVKVEEVKSSPLKASPNGFEPTSPEARAALDSLVKDSYAWFRGLVKDRRQMDDSQL 220

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             ++DGR++TG +A  + L+D +G ++     L A    +    ++D+            
Sbjct: 221 EKVADGRVFTGRQAVGLKLVDQLGDEKTAVAWLVAQKKVKPDLPVRDYKLEPRLGDLTFL 280

Query: 265 NLSISSLLEDT----------IPLMKQTKVQGLWAVWNP 293
             + S  L                + Q  + G+ A+W P
Sbjct: 281 RSAASLGLSAVGLDAAAQLLAQAGIDQFALDGMLALWRP 319


>gi|189425554|ref|YP_001952731.1| signal peptide peptidase SppA, 36K type [Geobacter lovleyi SZ]
 gi|189421813|gb|ACD96211.1| signal peptide peptidase SppA, 36K type [Geobacter lovleyi SZ]
          Length = 295

 Score =  157 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/263 (25%), Positives = 130/263 (49%), Gaps = 1/263 (0%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
           + FS       + P V  + ++G I DS E I ++   ++ DS  A+++ + SPGG    
Sbjct: 30  LLFSDKEKGFVSGPGVGLVEVKGMIVDSTEPIRQLRHFAKKDSVKAVVLRIDSPGGVVGP 89

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            + I+  ++K+  RK V+  +  +AAS GY I+  +++I A   ++  SIGVL ++  ++
Sbjct: 90  SQEIYEEVRKLAARKKVVVSMGSLAASGGYYIAAPASVIYANPGTITASIGVLIKFSNLE 149

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
               KLGVS  ++K+   K   +P   ++P+   M Q ++DS++  FV+ V+E R +P D
Sbjct: 150 GLFGKLGVSSTTIKTGSFKDAGAPDRPLSPEDRAMFQALIDSTHEQFVKAVAEGRKLPVD 209

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           +   ++DGR+ +G +A+ + L+D +G   +  +    L        +    P K   + +
Sbjct: 210 EVRRIADGRVLSGEQARALKLVDKLGNLPDAVEEAGRLAGISGEPALI-LPPKKKVNYLE 268

Query: 263 LKNLSISSLLEDTIPLMKQTKVQ 285
           L            +       +Q
Sbjct: 269 LLAEGAEEKFNGVLNKAVGRGLQ 291


>gi|299139693|ref|ZP_07032866.1| signal peptide peptidase SppA, 36K type [Acidobacterium sp.
           MP5ACTX8]
 gi|298598317|gb|EFI54482.1| signal peptide peptidase SppA, 36K type [Acidobacterium sp.
           MP5ACTX8]
          Length = 351

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 129/291 (44%), Gaps = 9/291 (3%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNS----PHVARIAIRGQIEDSQELIERIERISRD 63
           I    ++   +T+  +  S  S  +  S      +A I + G I D+ ++ +++++   D
Sbjct: 64  IAAVVIIAICITVASLAKSLGSDADGTSSLDSDSIAVIDVSGVILDADKVDKQLQKFGDD 123

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNII 121
           D+  A+I+ + SPGG A A + I+  + +++  K    +  +  + AS  Y I+ A + I
Sbjct: 124 DNVKAIILHIDSPGGGAAASQEIYHEVLRIRQEKHKKIVASIESVGASGAYYIASACDKI 183

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
            A   S+VGS+GV+ ++      L    +    + +  +K    P  ++ PK     Q +
Sbjct: 184 YANPASVVGSVGVIMEWTNYGDLLRWAKMKNVVIHAGELKDAGDPTRDLTPKEEAYFQSL 243

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           VD+ Y  F+  V+  R++  DK   L+ G++WTG +A  +GLID  GG            
Sbjct: 244 VDNMYVQFIHDVATGRHVGDDKIKPLATGQVWTGEQALPLGLIDAQGGFRIALIDTARSV 303

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
             +    I      K+     L +     +  +   L+ +    G + +W 
Sbjct: 304 GIKDEPHIVRPAKEKHGLAALLSD-GTDEIFPNPSKLLDRA--PGFYFLWK 351


>gi|241202814|ref|YP_002973910.1| signal peptide peptidase SppA, 36K type [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240856704|gb|ACS54371.1| signal peptide peptidase SppA, 36K type [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 316

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 117/300 (39%), Positives = 183/300 (61%), Gaps = 13/300 (4%)

Query: 5   LKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
            K    R + ++L+      F            PH+A + I G I D  EL+ER++++  
Sbjct: 14  RKLGFWRVIAVALIVALGFAFYRFALGDAGTERPHIAHVTISGLIVDDDELLERLKKVEI 73

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
            D   A+++S+SSPGG+ Y GE IF+AI+ +  +KPV+++V  +AASAGY+I+ A + I+
Sbjct: 74  SDQVKAVVISISSPGGTTYGGEKIFKAIRAISAKKPVVSDVRTLAASAGYMIATAGDTII 133

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A ++S+ GSIGV+FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A  M++++V
Sbjct: 134 AGDSSITGSIGVIFQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKAMIRNMV 193

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             SY+WFV LV++ R +P D+ L L+DG I+TG +A KV L+D +GG+ E+   L + GV
Sbjct: 194 VDSYNWFVDLVADRRKLPRDEVLKLADGTIYTGRQALKVKLVDAIGGEAEIRAYLTSRGV 253

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK----------QTKVQGLWAVWN 292
           D  +  + DW+   N  F     +S    +     LMK          +  + GL +VW 
Sbjct: 254 DSDLPMV-DWDKKSNTPFLLAGAVSRLITIFGYDDLMKTQDINGILPPKLLLDGLLSVWQ 312


>gi|241662586|ref|YP_002980946.1| peptidase S49 [Ralstonia pickettii 12D]
 gi|309781168|ref|ZP_07675905.1| signal peptide peptidase SppA, 36K type [Ralstonia sp. 5_7_47FAA]
 gi|240864613|gb|ACS62274.1| peptidase S49 [Ralstonia pickettii 12D]
 gi|308919989|gb|EFP65649.1| signal peptide peptidase SppA, 36K type [Ralstonia sp. 5_7_47FAA]
          Length = 364

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 131/291 (45%), Gaps = 15/291 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60
           +I  R+V L L+ + +  F S          H A + + G+I       ++ +   ++  
Sbjct: 78  RIFFRFVALGLIGVLIYAFASLEGETVSTGRHTAIVTLEGEIAANTNASAENINASLQAA 137

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCA 117
             DD+   +I+ ++SPGGS      I   I+++     + P+   V EM AS GY ++ A
Sbjct: 138 FADDNTVGVILKINSPGGSPVQAGMINDEIRRLRAKYKKIPLYVVVEEMCASGGYYVAAA 197

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           ++ I   + S+VGSIGVL         +DK+GV  + + +   K    PFS V+P+  Q 
Sbjct: 198 ADKIYVDKASIVGSIGVLMDGFGFTGLMDKVGVERRLLTAGSNKGMLDPFSPVSPQQKQY 257

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
            Q+++D  +  F+ +V + R         L  G  WTGA+A  +GL D +G  + V +S+
Sbjct: 258 AQEMLDQVHQQFIDVVKQGRGNRLKDDPTLFTGLFWTGAKAVDLGLADAIGSSDFVARSV 317

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                      + D+   +N+     + L  +        L    +++ L 
Sbjct: 318 IK------APDVVDYTVKENFASRVARKLGTAMGAGAVKALATTGQLKLLM 362


>gi|240136833|ref|YP_002961300.1| putative peptidase [Methylobacterium extorquens AM1]
 gi|254558708|ref|YP_003065803.1| peptidase [Methylobacterium extorquens DM4]
 gi|240006797|gb|ACS38023.1| putative peptidase [Methylobacterium extorquens AM1]
 gi|254265986|emb|CAX21736.1| putative peptidase [Methylobacterium extorquens DM4]
          Length = 321

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 95/272 (34%), Positives = 149/272 (54%), Gaps = 9/272 (3%)

Query: 31  VEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
                  +ARI+I G I  S    + IER+   ++   +++S+SSPGG+    E ++R +
Sbjct: 48  FPATENQIARISIGGFIAGSDSTRKLIERVGESNAVKGVVISISSPGGTTTGSEELYRNL 107

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           + +  +KP++  V   AAS  Y+ + A++ IVA ET+LVGSIGVLFQYP V   LDK+GV
Sbjct: 108 RALAAKKPMVAFVDGTAASGAYITAIAADHIVARETALVGSIGVLFQYPDVSGLLDKVGV 167

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
            ++SVKSSP+KAEPS FS  +P+A   +  +V  +Y WF  LV+E R +   +   ++DG
Sbjct: 168 KVESVKSSPLKAEPSGFSPTSPEARAALSSIVLDTYGWFKGLVAERRGMDESQIAAVADG 227

Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270
           R+++G ++  + L+D +GG+ +    L           +KDW P  +  F     L + +
Sbjct: 228 RVFSGRQSLPLKLVDELGGERQAVAWLEKEKKVPEKLPVKDWKPKADGGFKLWSTLGLGA 287

Query: 271 LLEDTIPLMKQTKV---------QGLWAVWNP 293
            L     L  + +           GL AVW P
Sbjct: 288 DLLGLEGLASRLRAVEDEAAGLSGGLLAVWRP 319


>gi|46581551|ref|YP_012359.1| signal peptide peptidase SppA, 36K type [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450973|gb|AAS97619.1| signal peptide peptidase SppA, 36K type [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311235195|gb|ADP88049.1| signal peptide peptidase SppA, 36K type [Desulfovibrio vulgaris
           RCH1]
          Length = 296

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/275 (24%), Positives = 135/275 (49%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
           F+   +     +      T  +   +       P +  + I G I D ++ +E + +++ 
Sbjct: 15  FIFGFLLIMVAVALFTGATATFRHLTDAGSFGGPRIGIVRIEGMIGDVRKTLEWMRKLAE 74

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           D +   ++V + SPGG+    + +  A++++   KPV+  +  +AAS G ++S  +  IV
Sbjct: 75  DRTVRGVLVRVDSPGGAVAPSQELHDAVKRLAADKPVVVSMGSLAASGGLMVSTGATRIV 134

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A   ++ GSIGV  + P V+  +DK+GV+ +++ S  +K   SPF  ++       Q ++
Sbjct: 135 ANPATITGSIGVKMEMPNVQGLMDKIGVARQTLVSGDLKDAGSPFRAMSEAERAYFQSII 194

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              Y  FV +++E RNIP +K    +DGRI TG++A ++GL+D +G +      L AL  
Sbjct: 195 MEMYGQFVSMIAEDRNIPVEKVRSFADGRILTGSQALELGLVDKLGSEAAAMDVLLALVD 254

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
            +  + +    P +  W  ++   ++       + 
Sbjct: 255 LKGEKPVFIEPPKERSWVREVLESALGIAPPQNMG 289


>gi|187928004|ref|YP_001898491.1| peptidase S49 [Ralstonia pickettii 12J]
 gi|187724894|gb|ACD26059.1| peptidase S49 [Ralstonia pickettii 12J]
          Length = 364

 Score =  156 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 131/291 (45%), Gaps = 15/291 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60
           +I  R+V L L+ + +  F S          H A + + G+I       ++ +   ++  
Sbjct: 78  RIFFRFVALGLIGVLIYAFASLEGETVSTGRHTAIVTLEGEIAANTNASAENINASLQAA 137

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCA 117
             DD+   +I+ ++SPGGS      I   I+++     + P+   V EM AS GY ++ A
Sbjct: 138 FADDNTVGVILKINSPGGSPVQAGMINDEIRRLRAKYKKIPLYVVVEEMCASGGYYVAAA 197

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           ++ I   + S+VGSIGVL         +DK+GV  + + +   K    PFS V+P+  Q 
Sbjct: 198 ADRIYVDKASIVGSIGVLMDGFGFTGLMDKVGVERRLLTAGSNKGMLDPFSPVSPQQKQY 257

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
            Q+++D  +  F+ +V + R         L  G  WTGA+A  +GL D +G  + V +S+
Sbjct: 258 AQEMLDQVHQQFIDVVKQGRGNRLKDDPTLFTGLFWTGAKAVDLGLADAIGSSDLVARSV 317

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                      + D+   +N+     + L  +        L    +++ L 
Sbjct: 318 IK------APDVVDYTVKENFASRVARKLGTAMGAGAVKALATTGQLKLLM 362


>gi|302035808|ref|YP_003796130.1| peptidase S49, putative signal peptide peptidase SppA [Candidatus
           Nitrospira defluvii]
 gi|300603872|emb|CBK40204.1| Peptidase S49, putative signal peptide peptidase SppA [Candidatus
           Nitrospira defluvii]
          Length = 299

 Score =  156 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 78/288 (27%), Positives = 147/288 (51%), Gaps = 6/288 (2%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63
           +L++I    +++    L ++          +   VA I I G I D+Q  I  ++  S +
Sbjct: 15  LLRRIFWA-IVIGGGALILLNALLPDLDFSSQDRVALIRIEGVILDAQATISELKHYSEN 73

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNII 121
               A+++ + SPGG     + I  A+++VKN+  K VI  +  +AAS GY I+ A++ I
Sbjct: 74  PLVKAIVLRIDSPGGGVVPSQEIHDAVKRVKNKSNKAVIASMGTVAASGGYYIAAATDRI 133

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
           +A   +L GSIGV+ +    +  + K+GV    +KS   K   SP  +++ +  +++Q V
Sbjct: 134 IANPGTLTGSIGVIMEMANFEGLMKKVGVEGVVIKSGRFKDVGSPLRKMSDEERKLLQSV 193

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           +D  +H F++ V++ R++       L+DGRI+TG +AK+  L+D +G  ++       + 
Sbjct: 194 MDDVHHQFIQAVADGRSLEVSDVEPLADGRIYTGRQAKEARLVDELGDLDDAIHIAADIA 253

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
             +   K+ +  P K + F D+     +S+    + L    K++ L A
Sbjct: 254 GMEGEPKVVE--PRKRFSFRDIIESRWASVFP-KLELNTGVKLKYLMA 298


>gi|330994449|ref|ZP_08318374.1| Putative signal peptide peptidase sppA [Gluconacetobacter sp.
           SXCC-1]
 gi|329758449|gb|EGG74968.1| Putative signal peptide peptidase sppA [Gluconacetobacter sp.
           SXCC-1]
          Length = 342

 Score =  156 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 83/283 (29%), Positives = 147/283 (51%), Gaps = 2/283 (0%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-ELIERIERISRDDSATALI 70
           ++ LSL                 +PH+  + ++G I   + E +E + R   D +   L+
Sbjct: 59  WLFLSLPASWPSGVRPGGWTGHQAPHLVHLKVQGVIGADEHENVEALNRARDDAAVRGLL 118

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + ++SPGG+   GE +  A+     RKPV+  +  +AASAGY++S  ++ I A  ++L G
Sbjct: 119 LEVNSPGGAVTGGEVLHDAVAAFARRKPVVVSMGSVAASAGYMVSTPASRIFANRSTLTG 178

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+ + P V P LD++GV +  + S PMK +PS    ++P+   M+Q VV   Y +FV
Sbjct: 179 SIGVILESPDVSPLLDRVGVRVDQLVSGPMKGQPSVVKPLSPEGRAMLQGVVSDLYDFFV 238

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
            +V++ R++P  +   L+DGR +TG +A  +GL+D +G  ++  + L    +     K+ 
Sbjct: 239 TVVAQDRHMPAGRVRELADGRPFTGQQALPLGLVDEIGNMDDARKWLVKKTILPDDAKVT 298

Query: 251 DWNPPK-NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           D  P      +  L +  +S +      L + + + G  A+W 
Sbjct: 299 DIGPAATRTRWQRLLSGILSVVPGAEFVLKESSALDGAVAIWK 341


>gi|163849634|ref|YP_001637677.1| signal peptide peptidase SppA, 36K type [Methylobacterium
           extorquens PA1]
 gi|163661239|gb|ABY28606.1| signal peptide peptidase SppA, 36K type [Methylobacterium
           extorquens PA1]
          Length = 321

 Score =  156 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 95/272 (34%), Positives = 149/272 (54%), Gaps = 9/272 (3%)

Query: 31  VEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
                  +ARI+I G I  S    + IER+   ++   +++S+SSPGG+    E ++R +
Sbjct: 48  FPATENQIARISIGGFIAGSDSTRKLIERVGESNAVKGVVISISSPGGTTTGSEELYRNL 107

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           + +  +KP++  V   AAS  Y+ + A++ IVA ET+LVGSIGVLFQYP V   LDK+GV
Sbjct: 108 RALAAKKPMVAFVDGTAASGAYITAIAADHIVARETALVGSIGVLFQYPDVSGLLDKVGV 167

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
            ++SVKSSP+KAEPS FS  +P+A   +  +V  +Y WF  LV+E R +   +   ++DG
Sbjct: 168 KVESVKSSPLKAEPSGFSPTSPEARAALSSIVLDTYGWFKGLVAERRGMDESQIAAVADG 227

Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270
           R+++G ++  + L+D +GG+ +    L           +KDW P  +  F     L + +
Sbjct: 228 RVFSGRQSLPLKLVDELGGERQAVAWLEKEKKVPEKLPVKDWKPKADGGFKLWSTLGLGA 287

Query: 271 LLEDTIPLMKQTKV---------QGLWAVWNP 293
            L     L  + +           GL AVW P
Sbjct: 288 DLLGLDGLASRLRAVEDEAAGLSGGLLAVWRP 319


>gi|190890072|ref|YP_001976614.1| proteinase IV protein [Rhizobium etli CIAT 652]
 gi|190695351|gb|ACE89436.1| proteinase IV protein [Rhizobium etli CIAT 652]
          Length = 316

 Score =  156 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 117/300 (39%), Positives = 182/300 (60%), Gaps = 13/300 (4%)

Query: 5   LKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
            K    R V ++LV    + F            PH+A + I G I D  EL+ER++++  
Sbjct: 14  RKLGFWRIVAVALVVALGLAFYGFAFGGAGTERPHIAHVTISGLIVDDDELLERLKKVET 73

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
            D   A ++S+SSPGG+ + GE IF+AI+ +  +KPV+++V  +AASAGY+I+ A + I+
Sbjct: 74  SDQVKAAVISISSPGGTTFGGEKIFKAIRAISAKKPVVSDVRTLAASAGYMIATAGDTII 133

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A ++S+ GSIGV+FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A  M++++V
Sbjct: 134 AGDSSITGSIGVIFQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKAMIRNMV 193

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             SY+WFV LV++ R +P D+ L L+DG I+TG +A K+ LID +GG+ E+   L + GV
Sbjct: 194 VDSYNWFVDLVADRRKLPRDEVLKLADGTIYTGRQALKMKLIDTIGGEPEIRAYLKSRGV 253

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ----------TKVQGLWAVWN 292
           D  +  + DW+   N  F     +S    +     L+K             + GL +VW 
Sbjct: 254 DTDLPMV-DWDKKSNTPFLLAGAVSRLITIFGYDDLVKGQDINGILPPKLLLDGLLSVWQ 312


>gi|327193444|gb|EGE60342.1| proteinase IV protein [Rhizobium etli CNPAF512]
          Length = 316

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 115/300 (38%), Positives = 182/300 (60%), Gaps = 13/300 (4%)

Query: 5   LKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
            K    R V ++LV    + F            PH+A + I G I D  EL+ER++++  
Sbjct: 14  RKLGFWRIVAVALVVALGLAFYGFAFGGAGTERPHIAHVTISGLIVDDDELLERLKKVET 73

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
            D   A ++S+SSPGG+ + GE IF+AI+ +  +KPV+++V  +AASAGY+I+ A + I+
Sbjct: 74  SDQVKAAVISISSPGGTTFGGEKIFKAIRAIAAKKPVVSDVRTLAASAGYMIATAGDTII 133

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A ++S+ GSIGV+FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A  M++++V
Sbjct: 134 AGDSSITGSIGVIFQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKAMIRNMV 193

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             SY+WFV LV++ R +P D+ L L+DG I+TG +A K+ L+D +GG+ E+   L + GV
Sbjct: 194 VDSYNWFVDLVADRRKLPRDEVLKLADGTIYTGRQALKMKLVDTIGGEPEIRAYLKSRGV 253

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ----------TKVQGLWAVWN 292
           +  +  + DW+   N  F     +S    +     L+K             + GL +VW 
Sbjct: 254 NTDLPMV-DWDKKSNTPFLLAGAVSRLITIFGYDDLVKGQDINGILPPKLLLDGLLSVWQ 312


>gi|166368609|ref|YP_001660882.1| protease IV [Microcystis aeruginosa NIES-843]
 gi|166090982|dbj|BAG05690.1| protease IV [Microcystis aeruginosa NIES-843]
          Length = 604

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 133/284 (46%), Gaps = 15/284 (5%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATA 68
           ++L     S      D+S  +A +   G I             +L + + ++   +   A
Sbjct: 298 ISLANYASSLDDEGGDSSDQIAIVYAEGTIVEGQGDRGEIGGDKLAKELRKLQGKEEVKA 357

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           +++ ++SPGGSA A E I R I+++  +KPVI  + ++AAS GY I+     I A   ++
Sbjct: 358 VVLRINSPGGSATASEVILREIKRLDAKKPVIISLGDVAASGGYWIAMGGQRIFADNDTI 417

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIGV      ++   +  G+   +VK+  +    +     NP+ +++ Q  V+  Y  
Sbjct: 418 TGSIGVFGLLLNIQKIANNNGIDWDTVKTGQLADISTITRPKNPQELEIYQAAVNRFYDL 477

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           F+  V++ R +  DK   ++ GR+WTG +A K+GL+D +GG E   Q             
Sbjct: 478 FIETVAKGRKLSPDKVRTVAQGRVWTGKDAVKIGLVDQIGGLEAAVQYAAKTAKLGDDWS 537

Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           +K++   +++    L     S+LL+  +P + +     L   W 
Sbjct: 538 LKEYPRSQSWQEELL-----SNLLQTYLPPLTKNNHP-LTQEWQ 575



 Score = 83.1 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 92/241 (38%), Gaps = 7/241 (2%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGE--AIFRAIQKVKNRKPVITEVHEM 106
           + +++I  IE+ + DDS   L++      G         + +A+ K +     I      
Sbjct: 82  NLRQVIAAIEKAALDDSIVGLLLYGRGTVGEYGYATLTEVRQALAKFRQSGKKIIAYDVE 141

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                Y ++  +  ++      +   G+  Q  +    L+K GV ++ VK    K    P
Sbjct: 142 WTEKEYYLASVAEKVIINPVGRMEINGLSSQQTFFADALEKYGVGVQVVKVGSFKGAVEP 201

Query: 167 F--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGL 223
           +   +++ +  Q +Q ++D+ +  +   V++SRN+   +   +SD   I     AKK G 
Sbjct: 202 YTRQDLSVQNRQQLQTLLDTIWSNYSATVAKSRNLTPQQVQTISDTQGILEATTAKKAGF 261

Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
           +D V   + V      L  +   +   +       +         SSL ++      Q  
Sbjct: 262 VDEVAYLDRVIALAKDLTGEAKNKT--NQEETSGSFSQISLANYASSLDDEGGDSSDQIA 319

Query: 284 V 284
           +
Sbjct: 320 I 320


>gi|296533548|ref|ZP_06896118.1| signal peptide peptidase SppA [Roseomonas cervicalis ATCC 49957]
 gi|296266118|gb|EFH12173.1| signal peptide peptidase SppA [Roseomonas cervicalis ATCC 49957]
          Length = 307

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 80/281 (28%), Positives = 147/281 (52%), Gaps = 5/281 (1%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVS 72
           V+  +  L          +     H+AR+ + G I D ++L E +   +RD +   +++S
Sbjct: 28  VLTVVAVLGAGALLAGRGLPVAGGHLARLTVEGTISDDRKLTEAVLEAARDPAVRGILLS 87

Query: 73  LSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
           + SPGG+   GE +  A+++ + + KPV+  +  M ASA Y+I+  +  + A +++L GS
Sbjct: 88  IDSPGGTVAGGEGLHAALRRFRDSGKPVVAVMRGMGASAAYMIAMPAQRVFARDSTLTGS 147

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IGV+ Q       LD LG+  + + S  +K EP+PF  + P+    ++ V+   +  FV 
Sbjct: 148 IGVILQSFEASRLLDTLGIRAEMLTSGALKGEPNPFRPLTPEGRAALEAVLRDLHEQFVT 207

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
           +V+E RN+P ++   L+DGRI+TG +A ++ LID +GG+ E    L A     +   ++D
Sbjct: 208 IVAEGRNLPRERVAELADGRIYTGRQALELRLIDAIGGEPEARAWLAAEQDIPASTPVRD 267

Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
            +P           +S+ +L++  +   +   + G  AVW 
Sbjct: 268 LDPRSA--AERALGVSLRALMKSVVS--EWLAIDGARAVWQ 304


>gi|90421920|ref|YP_530290.1| signal peptide peptidase SppA, 36K type [Rhodopseudomonas palustris
           BisB18]
 gi|90103934|gb|ABD85971.1| signal peptide peptidase SppA, 36K type [Rhodopseudomonas palustris
           BisB18]
          Length = 325

 Score =  155 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 85/281 (30%), Positives = 150/281 (53%), Gaps = 15/281 (5%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
            S  +   S  +AR+ I G I    + +E +ER+ +  +A A++V ++SPGG+    E +
Sbjct: 42  PSGPLAGTSGAIARVKIDGLIRSDADRVEALERLEK-SAAAAVVVHINSPGGTTAGSEQL 100

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
           + A+ ++K +KP++  +  +AAS GY+ + AS+ IVA ++SLVGSIGVLFQ+P     + 
Sbjct: 101 YDALVRLKAKKPLVVVIEGLAASGGYIAAIASDHIVAQQSSLVGSIGVLFQFPNFTELMK 160

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
            +GV ++ VKSSP+KA P+ F   +P+A   ++ +V  SY WF  LV   R +       
Sbjct: 161 TVGVKVEEVKSSPLKAAPNGFEPTSPEARAALESLVKDSYAWFRGLVKSRRGMDDQLLEK 220

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           ++DGR++TG +A  + LID +G ++     L A    ++   ++D+     +        
Sbjct: 221 VADGRVFTGRQAVDLKLIDQLGDEKTAIAWLVAEKKVKADLPVRDYKLTPRFGDLTFLRA 280

Query: 267 SISSLLEDT--------------IPLMKQTKVQGLWAVWNP 293
           + S  L+                +  ++Q  + G+ A+W P
Sbjct: 281 ATSITLDALGLNAVARQIERAGVVQSVEQLGLDGMLALWRP 321


>gi|170740731|ref|YP_001769386.1| signal peptide peptidase SppA, 36K type [Methylobacterium sp. 4-46]
 gi|168195005|gb|ACA16952.1| signal peptide peptidase SppA, 36K type [Methylobacterium sp. 4-46]
          Length = 321

 Score =  155 bits (390), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 96/287 (33%), Positives = 156/287 (54%), Gaps = 6/287 (2%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVS 72
           +++++  + +            +P +ARI + G I  S +  + ++R+    + + +IVS
Sbjct: 29  LIVAVGAIGLRAAGSRGPFPAITPQIARITVDGFIAGSDKTRDLMKRVGDSSAVSGVIVS 88

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           ++SPGG+    E +FR ++++  +KPV+  V   AAS  Y+ + A++ IVA ETSLVGSI
Sbjct: 89  INSPGGTTTGSEELFRNLRQLAEKKPVVAFVDGTAASGAYITALAADHIVARETSLVGSI 148

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GVLFQYP +   LDK+GV ++ VKSSP+KAEPS F   +P+A   +Q +V  +Y WF  L
Sbjct: 149 GVLFQYPDLSGLLDKVGVRVEEVKSSPLKAEPSGFHPTSPEARAALQAIVGDTYAWFKNL 208

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           V+E R +   +   +SDGR+++G +   + L+D  G +++    L           I+DW
Sbjct: 209 VAERRRMSEAELAAVSDGRVFSGRQGVALKLVDETGNEKQAVAWLERERHVTKDLPIRDW 268

Query: 253 NPPKNYWFCDLKNLS------ISSLLEDTIPLMKQTKVQGLWAVWNP 293
            P  +  F  L   S      +++ L  T          GL AVW P
Sbjct: 269 KPRSDRSFDLLSAASLLGLEDVAAGLRRTSGEAAALAQGGLLAVWRP 315


>gi|260891981|ref|YP_003238078.1| signal peptide peptidase SppA, 36K type [Ammonifex degensii KC4]
 gi|260864122|gb|ACX51228.1| signal peptide peptidase SppA, 36K type [Ammonifex degensii KC4]
          Length = 296

 Score =  155 bits (390), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 83/288 (28%), Positives = 140/288 (48%), Gaps = 19/288 (6%)

Query: 11  RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------DSQELIERI 57
             + LSLV   V   S    V      +  I + G I              D + +IE +
Sbjct: 12  AVIFLSLVLAAVWGRSRERGVGLGEGKIGLIYLTGVIAGEGGASPLFGSTADVRGVIEAL 71

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISC 116
            R   D S  A+++ + SPGGSA A + I  A+++V+   K V+  + + AAS  Y ++ 
Sbjct: 72  GRAEEDPSIKAVVLRIDSPGGSAAASQEISDAVRRVQKAGKKVVVSMGDTAASGAYWVAA 131

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
            ++ IVA  +++ GSIGV+F+   +     KLG+  + +KS P K   S    + P+   
Sbjct: 132 GADKIVALPSTITGSIGVIFETANLSGLYHKLGIQKEILKSGPFKDMGSESRPLTPEERA 191

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           ++Q +VD  Y  FV  V++ R++P  K L L+DGR++TG +AK++GL+D +G      Q 
Sbjct: 192 ILQGMVDDIYQQFVDHVAQGRHLPRQKVLELADGRVFTGRQAKELGLVDELGDLHTAVQE 251

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
              L   +   ++ +    K  WF       + SLL   +P  ++  +
Sbjct: 252 AAHLAGIKGKPEVVELG--KAAWFRRFFGGFLDSLL---LPRFQEGGL 294


>gi|298529709|ref|ZP_07017112.1| signal peptide peptidase SppA, 36K type [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511145|gb|EFI35048.1| signal peptide peptidase SppA, 36K type [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 296

 Score =  155 bits (390), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 70/277 (25%), Positives = 126/277 (45%), Gaps = 3/277 (1%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           + F    I T  V   L      +  +        P +  + + G I DS+++++ I+ +
Sbjct: 14  LIFGFMLIITAVVTFMLAMAVFNFLFFDGPKLRTQPKIGVVNVSGLITDSRDIVDWIQEL 73

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
              DS   +++ ++SPGG     + +FRA++ +   KPV+  +  +AAS GY  +  + +
Sbjct: 74  EEKDSVKGVLLRVNSPGGVVAPSQEVFRAVKDLAREKPVVASLGSVAASGGYYAASPAGV 133

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           IVA   +L  SIGV      ++  L KLG+  + V S   K   +    +  +  +  Q 
Sbjct: 134 IVANPGTLTASIGVKVTLTNIQELLQKLGIEDQGVYSGEFKDAGTVSRPMTEEEREYFQG 193

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +VD  +  FV+ V+ +R++   +   L+DGR  TG +A + GL+D +GG+ E    L   
Sbjct: 194 LVDDMHEQFVQDVALARDMDEQRVYDLADGRAMTGRQALEAGLVDELGGRSEALDILCEK 253

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
                  K  +    +      L+ +     L D IP
Sbjct: 254 VQLPRDAKQLEGPEER---MSILRRILSEFSLGDNIP 287


>gi|260567208|ref|ZP_05837678.1| clp protease [Brucella suis bv. 4 str. 40]
 gi|260156726|gb|EEW91806.1| clp protease [Brucella suis bv. 4 str. 40]
          Length = 327

 Score =  155 bits (390), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 103/281 (36%), Positives = 173/281 (61%), Gaps = 12/281 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             F      + N PH+A++ I G I +++EL++R+++I+ DD+   +I+ L SPGG+   
Sbjct: 36  FAFYSLRSAKFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLLDSPGGTTVG 95

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           GEAI+ A++K+  +KPV+T+V  +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + 
Sbjct: 96  GEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 155

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LD LGV ++++KSSP+KAEP+ FS  + +A  M++ ++  SY WFV +V E R   ++
Sbjct: 156 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRSMIMDSYDWFVGIVQERRAFTHE 215

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           + L L++G ++TG +A    LID +GG+ E    L   G+   + ++ +W    +     
Sbjct: 216 QALALANGAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPRL-EWKLVGSETGFS 274

Query: 263 LKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292
           L++L I +        ++    +      +  + GL +VW+
Sbjct: 275 LRDLIIHAGARLLGLPQEADGAIKEIVRDRIFLDGLLSVWH 315


>gi|298505345|gb|ADI84068.1| peptidase, S49 family [Geobacter sulfurreducens KN400]
          Length = 293

 Score =  155 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 132/277 (47%), Gaps = 1/277 (0%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSAT 67
           +    ++ +                     +    ++G I DSQE +++++ + +  S  
Sbjct: 13  LVALIILFTFSVQMARILMGDMTAATIGDGIGYAEVKGPIIDSQETVKQLDDLRKKSSVK 72

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           A+++ + SPGG     + I+ A++++   K V+  +  +AAS GY ++  + +I A   +
Sbjct: 73  AVVLRVESPGGVIGPSQEIYAAVKRLAATKKVVVSMGSVAASGGYHVAVPAAVIYANPGT 132

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           + GSIGVL +   ++  +DK+G+   ++KS   K   SP  ++  +   ++Q V+D+ + 
Sbjct: 133 ITGSIGVLMKLSNIEGLMDKVGLKAFTLKSGKFKDSGSPVRKLTEEERAVLQGVIDNLHD 192

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            FVR V+E R +P ++   L+DGR++TG +A ++ L+D +G   +       L   +   
Sbjct: 193 QFVRAVAEGRQLPVEEVRRLADGRVYTGEQALRLKLVDRLGTLHDAVMEAGRLAGIEGEP 252

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
            +    P K     D+    ++  +  ++   +    
Sbjct: 253 TLI-IPPKKRKLLRDMLFGEVAEAVRGSVRKEEGLSF 288


>gi|124515664|gb|EAY57173.1| Peptidase S49 (SppA) [Leptospirillum rubarum]
 gi|206602280|gb|EDZ38762.1| Peptidase S49 (SppA) [Leptospirillum sp. Group II '5-way CG']
          Length = 295

 Score =  155 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 75/284 (26%), Positives = 137/284 (48%), Gaps = 8/284 (2%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSAT 67
           I      L  +          +        +  I I G I  S++ I +I  ++ D    
Sbjct: 13  IFIAVTALIFLLGRAAGHFGRALPLVGGAEIGVIRINGVILHSEKTIRQIRTLASDPEVK 72

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAET 126
           A+++ ++SPGG+    + I+  + K + + K V++ +  + AS  Y I+ AS+ I+A+  
Sbjct: 73  AILLRINSPGGAVVPSQDIYEEVLKARKKGKIVVSSIGTVGASGAYYIASASDFIMASSG 132

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           SL GSIGV+ +   VK  LDK+GV  + VKS  MK   SPF  +       M+ ++D+ +
Sbjct: 133 SLTGSIGVIMELAEVKDLLDKIGVHSEVVKSGKMKDVGSPFRPMTADEKAYMKSLLDNIH 192

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
             F+  VS+ R++  DK   L+DGR++TG  A +  L+D +G   +  +    +   + I
Sbjct: 193 QQFILAVSKGRHLSVDKIDPLADGRVFTGEMAFRYHLVDGIGDYRDALRKAATMAHLKVI 252

Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
             I++++         L +  +S+LL   +      +  G W++
Sbjct: 253 PAIREFHKK--GVLNSLISSKVSTLLGGGLG-----ESTGFWSI 289


>gi|242280848|ref|YP_002992977.1| signal peptide peptidase SppA, 36K type [Desulfovibrio salexigens
           DSM 2638]
 gi|242123742|gb|ACS81438.1| signal peptide peptidase SppA, 36K type [Desulfovibrio salexigens
           DSM 2638]
          Length = 293

 Score =  155 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 64/259 (24%), Positives = 135/259 (52%), Gaps = 1/259 (0%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVED-NSPHVARIAIRGQIEDSQELIERIERISRDDSA 66
                +++++  L      +   V+  ++  +  + ++G I +S   ++ +  + RDDS 
Sbjct: 16  FGFSLLLMAVALLWGAAAFFHGKVDLFSAGKIGVVNVQGTITNSLPTVKFLRDLRRDDSV 75

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
             +++ ++SPGG+    + ++ A++++   KP++     +AAS GY  +  +  I+A+  
Sbjct: 76  KGVLLRVNSPGGTIAPSQELYHAVKRLAEVKPIVASFGTVAASGGYYAAAPATKIMASSG 135

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           S+ GSIGV  +Y      ++K+GV    + S  MKA  SPF+E+ P+  + +  ++   +
Sbjct: 136 SITGSIGVKAEYANFHQLMEKIGVKPVIITSGKMKAAGSPFTELTPEQREYLTALIMDMH 195

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
           + FV  V+ +R +  ++   ++DGR  TG EAK++GL+D +GG E+    L AL   +  
Sbjct: 196 NQFVDDVASARKLDREQVEKIADGRAITGREAKELGLVDRIGGFEDSVTVLKALCNIEGD 255

Query: 247 RKIKDWNPPKNYWFCDLKN 265
            K+ +    +     ++  
Sbjct: 256 VKVIEGPEEEKPLLKEILG 274


>gi|296134407|ref|YP_003641654.1| signal peptide peptidase SppA, 36K type [Thermincola sp. JR]
 gi|296032985|gb|ADG83753.1| signal peptide peptidase SppA, 36K type [Thermincola potens JR]
          Length = 315

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/310 (22%), Positives = 147/310 (47%), Gaps = 23/310 (7%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVE------DNSPHVARIAIRGQIED-------- 49
           + KK+    ++   +   V+  +     +           +  I+I G I          
Sbjct: 1   MQKKLVVGIILGICILSLVIALAVEPGEKPLISGPKYDNAIGLISIEGPITGGDVGGLFE 60

Query: 50  ----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVH 104
               ++ ++E++   ++D S  A+I+ ++SPGG+  A + I   ++KV+   K V+  + 
Sbjct: 61  VSAGAESIMEQLREAAKDKSLKAVIIRINSPGGTVAASQEIGEEVEKVRKAGKKVVISMG 120

Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164
           ++AAS GY I+   + IVA   ++ GSIGV+ +   +    +K+G++ +S+KS   K   
Sbjct: 121 DVAASGGYWIAAKGDKIVANPGTVTGSIGVIMESLNMSDLYNKVGIADQSIKSGAHKDMG 180

Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLI 224
           SP   +  +   ++Q +VD  ++ FV +V++ R +  +  L ++DGR++TG +AK +GL+
Sbjct: 181 SPSRPLTQEEKVILQSMVDDMFNQFVDVVAKGRRMKREDVLKIADGRVFTGRQAKSLGLV 240

Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL---EDTIPLMKQ 281
           D +G   +  +    L   +   ++ +  P K+ W        +S  +   E  +   + 
Sbjct: 241 DELGNYYDAVRLTAKLAGIKGEPEVVELKP-KDPWASFFGKAMLSFGIRDYEGILKAAET 299

Query: 282 TKVQGLWAVW 291
             +     +W
Sbjct: 300 RDLPRYMLLW 309


>gi|289549221|ref|YP_003474209.1| signal peptide peptidase SppA, 36K type [Thermocrinis albus DSM
           14484]
 gi|289182838|gb|ADC90082.1| signal peptide peptidase SppA, 36K type [Thermocrinis albus DSM
           14484]
          Length = 282

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 140/278 (50%), Gaps = 5/278 (1%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64
           + +   R ++   +  ++               +A + + G I D Q ++ ++E+   D 
Sbjct: 1   MGRWIKRVLIFFGILFSLGMLGTFLARFPIGDRIAVVKVEGVITDPQAVVSKMEKARLDP 60

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVA 123
           S  AL++ + SPGGS  A + I+R +++ +   KPV+  +  +AAS GY IS  +N+I A
Sbjct: 61  SVKALVLRVESPGGSVGASQEIYREVERFRQSGKPVVVSMGNVAASGGYYISAPANVIYA 120

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
              ++ GSIGV+ Q+  V+  L+KLG+   ++K+   K   SPF E+ P+  Q +Q++V+
Sbjct: 121 NPGTITGSIGVIIQHTDVQQLLEKLGIKTTAIKTGKFKDTLSPFRELTPEERQYLQNLVE 180

Query: 184 SSYHWFVRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
            +Y  F+  +   R     +     ++DGRI TG +AK++GL+D +G  ++  Q    L 
Sbjct: 181 DAYSQFIEAILRYRKGKVQEDILRQIADGRILTGKQAKELGLVDELGDLQDAIQKAKELA 240

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
                R    +   K  +   +    + SL +   PLM
Sbjct: 241 RVPQAR--VFYMEDKKGFLKRMLEGKVPSLQQVWSPLM 276


>gi|17545763|ref|NP_519165.1| protease transmembrane protein [Ralstonia solanacearum GMI1000]
 gi|17428057|emb|CAD14746.1| putative protease transmembrane protein [Ralstonia solanacearum
           GMI1000]
          Length = 378

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 127/291 (43%), Gaps = 15/291 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60
           +I  R+V L ++   +  F S+      +  H A + + G+I       +  +   +E  
Sbjct: 92  RIFFRFVTLGIIGGLLYLFASFEGETVSSGRHTALVTLDGEIAANTNASADNINASLEAA 151

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCA 117
             DD+   +I+ ++SPGGS      I   I++++ +   I     V EM AS GY ++ A
Sbjct: 152 FADDNTAGVILKINSPGGSPVQAGMINDDIRRLRAKYKNIPLYVVVEEMCASGGYYVAAA 211

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           ++ I   + S+VGSIGVL         +DKLGV  + + +   K    PFS V P+  Q 
Sbjct: 212 ADKIYVDKASIVGSIGVLMDGFGFTGLMDKLGVERRLLTAGTNKGMLDPFSPVAPQQRQF 271

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
            Q ++D  +  F+ +V + R         L  G  WTGA+A  +GL D +GG + V +  
Sbjct: 272 AQAMLDEVHQQFIDVVKQGRGSRLKDDPQLFSGLFWTGAKAVDLGLADGIGGTDFVAR-- 329

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                      + D+   +N+     +    +        L    +++ L 
Sbjct: 330 ----NIIKAPDLVDYTVKENFAERVARKFGTAMGAGAIKALAATGQLKLLM 376


>gi|194017284|ref|ZP_03055896.1| signal peptidase SppA [Bacillus pumilus ATCC 7061]
 gi|194011152|gb|EDW20722.1| signal peptidase SppA [Bacillus pumilus ATCC 7061]
          Length = 333

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 131/265 (49%), Gaps = 17/265 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSS 75
                +  +A + I G I+D+              +  ++ +E+   D S   +++ ++S
Sbjct: 51  EDGSGAGKIAVLEINGTIQDNGGASSLLGGEGYDHRAFLKELEKAKDDASVKGVLLRVNS 110

Query: 76  PGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           PGG  Y    I + +++VK  +KP+   +  MAAS GY +S  +  I A+  +L GS+GV
Sbjct: 111 PGGGVYESAEIHKKLEEVKKAKKPIYVSMGSMAASGGYYVSTPAKKIFASPETLTGSLGV 170

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           + Q        D LG+  +++KS   K   SP  ++      +MQ +VD+SY  FV+++S
Sbjct: 171 IMQSLNYSKLADNLGIKYETIKSGKFKDIMSPNRDMTKDERDIMQSMVDNSYEGFVKVIS 230

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           E R +       ++DGR++ G +AK  GL+D +G  E+  +++           +  ++ 
Sbjct: 231 EGRGMSKQDVKKIADGRVYDGTQAKSNGLVDELGYYEDAIKAMKKNEKGLKGATVVSYS- 289

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLM 279
            +++ +  L N+S S L +  I  +
Sbjct: 290 -QSFGWNSLFNMSASKLFKSEIDFL 313


>gi|221633251|ref|YP_002522476.1| protease IV, signal peptide peptidase [Thermomicrobium roseum DSM
           5159]
 gi|221155784|gb|ACM04911.1| protease IV, signal peptide peptidase [Thermomicrobium roseum DSM
           5159]
          Length = 321

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 77/262 (29%), Positives = 135/262 (51%), Gaps = 14/262 (5%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------DSQELIERIERIS 61
           L+L     +  S         PHVA I +RG I               ++ ++E++ER  
Sbjct: 25  LALTAGLGMLASGRLDRWLEQPHVAEIRVRGPIALRGGAGLLTGESASAERIVEQLERAR 84

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNI 120
           ++ +A  +++ + SPGG   A   I+ A+++V+   KPV+    + AAS GY IS  ++ 
Sbjct: 85  QNPNARVVLLRVDSPGGGVNAAREIWAAVRRVQESGKPVVAFFEDTAASGGYYISAPADR 144

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           IVA   ++ GSIGV+   P +    +KLG+ ++ VKS   K   S    + P+   +++ 
Sbjct: 145 IVAMPDTITGSIGVILIIPDLSGLYEKLGIRMQVVKSGTFKDMASSDRPLTPEERALLEQ 204

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V  +Y  FVR+V+E R +P ++   L+DGRI+TG +AK++GL+D +GG  +       L
Sbjct: 205 LVHEAYDEFVRVVAEGRAMPPERVRELADGRIYTGRQAKELGLVDELGGYRDALAVAGQL 264

Query: 241 GVDQSIRKIKDWNPPKNYWFCD 262
               +   ++ + P   +W   
Sbjct: 265 AGLGAEPAVRVYRPQPTFWESL 286


>gi|319789919|ref|YP_004151552.1| signal peptide peptidase SppA, 36K type [Thermovibrio ammonificans
           HB-1]
 gi|317114421|gb|ADU96911.1| signal peptide peptidase SppA, 36K type [Thermovibrio ammonificans
           HB-1]
          Length = 292

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 82/272 (30%), Positives = 147/272 (54%), Gaps = 6/272 (2%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDN-----SPHVARIAIRGQIEDSQELIERIER 59
           +K++K  +++L ++   V+  +       +      P VA + I G I  S+  ++ ++R
Sbjct: 1   MKRLKGIFLLLGVMAFVVLVMALFPKEMGSIEAAYGPKVAIVRIEGVISRSEPYLKLLDR 60

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119
           + R+ S  A+++ + SPGG   A + I   + +V  RKPV+  +  +AAS G  +S  + 
Sbjct: 61  VERNSSVKAVVLRVDSPGGVVGACQEIHDKVAEVARRKPVVVSMDSVAASGGLYVSVPAT 120

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179
            IVA   ++ GSIGV+ Q   V     KLG+   +VKS   K   +PF + +P+ ++++Q
Sbjct: 121 KIVANPGTITGSIGVIIQVLNVSQLAQKLGIEAVTVKSGRCKDLLNPFKKPDPECLKVVQ 180

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
           +++D SY+ FV  V++ R++P +K    +DGRI+TG  AK++GL+D +GG E+  +    
Sbjct: 181 NLIDDSYNQFVEAVAKGRHLPVEKVRSFADGRIFTGRRAKELGLVDYLGGIEKAVEVAKK 240

Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           LG      K+ +  P + +W         S L
Sbjct: 241 LGRCPGA-KVVEVKPKRGFWERIFGPAGESVL 271


>gi|237746014|ref|ZP_04576494.1| peptidase U7 family [Oxalobacter formigenes HOxBLS]
 gi|229377365|gb|EEO27456.1| peptidase U7 family [Oxalobacter formigenes HOxBLS]
          Length = 315

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 130/290 (44%), Gaps = 14/290 (4%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIE 58
           +  K+ T ++++ L+     +           PH A I IRG I       +  +I+ ++
Sbjct: 30  IFFKLVTLFLIIFLIVSVRNFSFSEGEGAPVQPHTAVIEIRGTIEATGNASASNIIKALD 89

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN---RKPVITEVHEMAASAGYLIS 115
           R  ++  AT +I+ ++SPGGS      I+  I++++N    KP+   V E+ AS GY I+
Sbjct: 90  RAYKEPMATGVILKINSPGGSPVQAGMIYDEIRRLRNTYPDKPLYVVVEELCASGGYYIA 149

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGV+     V   +DKLG+  + + +   K    PFS   P+ +
Sbjct: 150 AAADKIYVDKASIVGSIGVMINGFGVTGLMDKLGIERRLLTAGEYKGFLDPFSPQTPQQI 209

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           Q  Q +++  +  F+ +V E R     +   +  G ++ G EA K+GL D +G  E V +
Sbjct: 210 QYAQSMLNQIHQQFIEVVREGRGNRLKENREIYSGLVFLGPEAIKLGLADDLGTVESVAR 269

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
            +          +  D+   +      LK    S              + 
Sbjct: 270 DVIK------SPETVDYTEQEKLSDRVLKKFGASVGYGAAKAGFDWNPLP 313


>gi|27375852|ref|NP_767381.1| proteinase IV [Bradyrhizobium japonicum USDA 110]
 gi|27348990|dbj|BAC46006.1| proteinase IV [Bradyrhizobium japonicum USDA 110]
          Length = 326

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 84/271 (30%), Positives = 144/271 (53%), Gaps = 15/271 (5%)

Query: 37  HVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
            +AR+ I G I    +  + +ER+  +  A A+IV ++SPGG+    E ++ ++ ++K +
Sbjct: 53  SIARVQIDGLIRSDSDRTQALERL-ENSQAAAVIVHINSPGGTTAGSEQLYDSLVRLKAK 111

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
           KP++  V  +AAS GY+ + AS+ I+A ++SLVGSIGVLFQYP V   L  +GV ++ VK
Sbjct: 112 KPLVVVVEGLAASGGYITAIASDHIIAQQSSLVGSIGVLFQYPNVTELLKTIGVKVEEVK 171

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216
           SSP+KA P+ F   +P+A   + ++V  SY WF  LV E R +   +   ++DGR++TG 
Sbjct: 172 SSPLKAAPNGFEPTSPEARAALDELVKDSYAWFKGLVKERRGMDDTQLEKVADGRVFTGR 231

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT- 275
           +A  + LID +G ++     L      +    ++D+     +        + +  LE   
Sbjct: 232 QAIDLKLIDQIGDEKTAVTWLVEQKGVKKGLSVRDYKLQSRFGDLPFLKTAAAVTLEALG 291

Query: 276 -------------IPLMKQTKVQGLWAVWNP 293
                           + +  + G+ A+W P
Sbjct: 292 LGSIAHQIGQTGVAQAVDRFGMDGMLALWQP 322


>gi|154250604|ref|YP_001411428.1| signal peptide peptidase SppA, 36K type [Parvibaculum
           lavamentivorans DS-1]
 gi|154154554|gb|ABS61771.1| signal peptide peptidase SppA, 36K type [Parvibaculum
           lavamentivorans DS-1]
          Length = 314

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 87/276 (31%), Positives = 158/276 (57%), Gaps = 12/276 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
            S +     H+AR+ I G I   +   E  ++++ D S   +I+S+ SPGG+    EA++
Sbjct: 39  ESGIYLPRAHIARVTIDGVIVHDRYQNEMFKKLAEDSSVRGVILSIDSPGGTTTGAEALY 98

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            A++++  +KPV+  +  +AAS GY+ + +++ IV+   ++ GSIGV+FQ+  ++  L  
Sbjct: 99  EAVRELAEKKPVVAVLGTVAASGGYIAALSADHIVSRGNTITGSIGVVFQWAQLEKLLGN 158

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
           +GV ++ VKSSP+KAEPSPF   NP+A+++ ++++DSSY WF+RLV+  R +      ++
Sbjct: 159 IGVEVREVKSSPLKAEPSPFHTTNPEALKVTRELIDSSYDWFLRLVTIRRGLDEATARMV 218

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
            DGR++TG +A + GL+D +GG++E    L       +   ++D  P   Y    + + +
Sbjct: 219 GDGRVYTGWQAVENGLVDELGGEDEAIAWLAKEHKIDASLPVRDRTP--AYPDLGMASFT 276

Query: 268 ISSLLEDTIPLMK----------QTKVQGLWAVWNP 293
             +L E  +  +           +  + GL +VW P
Sbjct: 277 GKALGEAAVTAIDGLTGKTQQTKRLTLDGLTSVWQP 312


>gi|218440875|ref|YP_002379204.1| signal peptide peptidase SppA, 67K type [Cyanothece sp. PCC 7424]
 gi|218173603|gb|ACK72336.1| signal peptide peptidase SppA, 67K type [Cyanothece sp. PCC 7424]
          Length = 605

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/283 (26%), Positives = 139/283 (49%), Gaps = 14/283 (4%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLS 74
            F   +  E  S  +A +   G+I D          +   + + +I +D +  A+++ ++
Sbjct: 304 GFLRENQNESASNQIAVVYAEGEIVDGQGAVSNIGGERFAKELRKIRQDPNVKAVVLRIN 363

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGGSA A + I R ++ +K +KPVI  +  +AAS GY I+  +N I A  +++ GSIGV
Sbjct: 364 SPGGSATASDIIGREVKLMKEKKPVIVSMGNVAASGGYWIATEANHIFAEPSTITGSIGV 423

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
                 V+   +  G++   VK++ +    +       + + + Q  V   Y+ FV  V+
Sbjct: 424 FGMLFNVQDIANNNGITWDVVKTAKLADLGTTTRPKTEQELAIYQRSVQQIYNLFVNKVA 483

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           +SRN+P  K   +++GR+W+G +AK++GL+D +GG E            +   +I+++  
Sbjct: 484 QSRNLPESKVKQIAEGRVWSGEDAKQLGLVDEIGGLEAAILYAAKEAKLEKNWEIQEYPR 543

Query: 255 PKNYWFCDLKNLSISSLLEDTIP-----LMKQTKVQGLWAVWN 292
            + +    L+ L  S + E   P       +  K++   AV+ 
Sbjct: 544 RRTFESIILERLFTSKITESITPSPDSLTAEMLKLKEDLAVFQ 586



 Score = 80.0 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 98/252 (38%), Gaps = 13/252 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGS--AYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
           ++++  IE+ ++D    A+ +                + + ++K +     I        
Sbjct: 84  RQVLGVIEKATKDAQIEAIFIDGRGIEADNGIATLTEVRQGLEKFRAAGKKIIFYDVDLN 143

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167
              Y +   ++ I+     ++   G+  Q  ++   L+K G+ I+ ++    KA   PF 
Sbjct: 144 EKSYYLGSVADEIILNPMGMMEFNGIGTQPLFLAGALEKYGIGIQVIRVGEFKAAVEPFI 203

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLID 225
              ++P+     Q +++  +   +  V +SRN+  +K   ++D   +    EA+K+GLID
Sbjct: 204 RQTMSPENRLQTQVLLNDLWTNVLTTVGKSRNVTPNKLQAIADNQGMLMPTEAEKIGLID 263

Query: 226 VVGGQEEVWQSLYALGV--------DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
            V   +EV   L  L          D+            + +  + +N S S+ +     
Sbjct: 264 RVAYFDEVVTDLKTLTGKTSESENPDEKSFPQISVENYASGFLRENQNESASNQIAVVYA 323

Query: 278 LMKQTKVQGLWA 289
             +    QG  +
Sbjct: 324 EGEIVDGQGAVS 335


>gi|73668088|ref|YP_304103.1| signal peptide peptidase A [Methanosarcina barkeri str. Fusaro]
 gi|72395250|gb|AAZ69523.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Methanosarcina barkeri str. Fusaro]
          Length = 394

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 79/303 (26%), Positives = 136/303 (44%), Gaps = 19/303 (6%)

Query: 6   KKIKTRYVMLSLVTLTVVYF------SWSSHVEDNSPHVARIAIRGQIED---------- 49
           + +    V+L+L+T+ +V                +S  VA I I+G I            
Sbjct: 92  RWMPYLLVLLALITIILVSLVLISSNFGVGGNLGSSEKVAVIYIQGTIFSGNVAEGLGYA 151

Query: 50  -SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMA 107
            S+ +   I R + DD   A+++ + S GGS  A + I   I+K + +  PV+  + ++A
Sbjct: 152 TSEAIAGDIRRAAADDGVKAIVLRIDSSGGSPAAAQEIVEEIKKAQAKGIPVVVSMGDLA 211

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           ASA Y IS  ++ I+A  ++  GSIGV++ +       ++ GV     KS  MK   S +
Sbjct: 212 ASAAYYISAPTDYIIANPSTNTGSIGVIWVFQNNSLSNEETGVDYYVAKSGEMKDMGSTW 271

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
             +  +  +    VV  SY  FV  VSE RN+   +   L+DGRI+TG  AK++GL+D  
Sbjct: 272 RGLTDQEKEYADSVVMDSYENFVTEVSEGRNMSRGEVKALADGRIYTGTRAKELGLVDGF 331

Query: 228 GGQEEVWQSLYALGVDQSIRKIKDWNPPK-NYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           G   +       LG      K++  N    +       +   +   + ++   +++    
Sbjct: 332 GNIYDAIDKAAELGGISGEPKVEYMNKASLSRLLLGSDSKVSNETAKQSVSYFEESPYGK 391

Query: 287 LWA 289
           L A
Sbjct: 392 LLA 394


>gi|157693342|ref|YP_001487804.1| peptidase [Bacillus pumilus SAFR-032]
 gi|157682100|gb|ABV63244.1| S49 family unassigned peptidase [Bacillus pumilus SAFR-032]
          Length = 333

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 131/265 (49%), Gaps = 17/265 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSS 75
                +  +A + I G I+D+              +  ++ +E+   D S   +++ ++S
Sbjct: 51  EDGSGAGKIAVLEINGTIQDNGGASSLLGGEGYDHRAFLKELEKAKDDASVKGVLLRVNS 110

Query: 76  PGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           PGG  Y    I + +++VK  +KP+   +  MAAS GY +S  +  I A+  +L GS+GV
Sbjct: 111 PGGGVYESAEIHKKLEEVKKAKKPIYVSMGSMAASGGYYVSTPAKKIFASPETLTGSLGV 170

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           + Q        D LG+  +++KS   K   SP  ++      +MQ +VD+SY  FV+++S
Sbjct: 171 IMQSLNYSKLADNLGIKYETIKSGKFKDIMSPNRDMTKDERDIMQSMVDNSYEGFVKVIS 230

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           E R +       ++DGR++ G +AK  GL+D +G  E+  +++           +  ++ 
Sbjct: 231 EGRGMSKQDVKKIADGRVYDGTQAKSNGLVDELGYYEDAIKAMKKNEKGLKGATVISYS- 289

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLM 279
            +++ +  L N+S S L +  I  +
Sbjct: 290 -QSFGWNSLFNMSASKLFKSEIDFL 313


>gi|78222959|ref|YP_384706.1| signal peptide peptidase A [Geobacter metallireducens GS-15]
 gi|78194214|gb|ABB31981.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Geobacter metallireducens GS-15]
          Length = 301

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 133/263 (50%), Gaps = 1/263 (0%)

Query: 8   IKTRYVMLSLVTLTVV-YFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66
           I     +L  +++ +         +  +   V  + ++G I +S+E+++++  + +  + 
Sbjct: 12  IVAALALLFTLSIQIARLILGDGPMVSSGEGVGYVEVKGPILESEEIVKQLSEMRKKTNV 71

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
            A+++ + SPGG     + I+ A++K+   K V+  +  +AAS GY I+  + +I A   
Sbjct: 72  KAVVLRIESPGGVIGPSQEIYEAVKKLAKTKKVVVSMGSVAASGGYHIAIPAAVIYANPG 131

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           ++ GSIGVL +   V+  +DK+G+   ++KS   K   SP   +  +   ++Q V+D+ +
Sbjct: 132 TITGSIGVLMKLANVEGLMDKVGMKAFTLKSGKFKDAGSPVRALTDEDRALLQGVIDNLH 191

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
             FV+ V+E+R +P ++   L+DGR++TG +A  + L+D +G  E+  +    L   +  
Sbjct: 192 TQFVKAVAEARKLPVEEVRRLADGRVYTGEQAVSLKLVDRLGTLEDAVEEAGRLAGIKGE 251

Query: 247 RKIKDWNPPKNYWFCDLKNLSIS 269
             +      + +    L   +  
Sbjct: 252 PTLLMPPKKRKHLRDYLLEEASG 274


>gi|328951771|ref|YP_004369105.1| signal peptide peptidase SppA, 36K type [Desulfobacca acetoxidans
           DSM 11109]
 gi|328452095|gb|AEB07924.1| signal peptide peptidase SppA, 36K type [Desulfobacca acetoxidans
           DSM 11109]
          Length = 297

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 126/271 (46%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63
           V   +    +    V L V+  +  S        V  + + G I D++  +  +++   +
Sbjct: 9   VFLLLGAVILFFIGVALLVLPLAGDSLPLAKGDRVGVVEVSGLIRDAKTTLNHLKKFREN 68

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
           +   A++V ++SPGG+    + I   + + + +K V+  +  +AAS GY I   ++II+A
Sbjct: 69  NRIRAIVVRVNSPGGAVGPSQEILEEVIRTREKKKVVASLGTVAASGGYYIVSGADIIMA 128

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
              +L GSIGV+  +  V+  L K+G+ + ++K+   K   SP   + P   + +Q ++D
Sbjct: 129 NPGTLTGSIGVIMNFTNVEQLLSKIGLELFNLKAGKYKDVGSPLRPMTPVEKEYIQGLLD 188

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
           + +  F+R V+  R +   K   + DGRI+TG E K +GL+D +G   +       LG  
Sbjct: 189 NVHEQFIRDVAHGRRMLVHKVREVGDGRIFTGEEGKNLGLVDALGNLPDAIDLAGRLGGI 248

Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLED 274
           +   +       K   F  L       +L  
Sbjct: 249 KGKVEAVYPPKEKLSLFGLLFGDDPEEILAR 279


>gi|325291771|ref|YP_004277635.1| protease IV [Agrobacterium sp. H13-3]
 gi|325059624|gb|ADY63315.1| putative protease IV [Agrobacterium sp. H13-3]
          Length = 317

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 118/293 (40%), Positives = 180/293 (61%), Gaps = 9/293 (3%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATA 68
                +       +  F W++  +   PH+AR+ I G I+D+ EL+ER+++I++ D+   
Sbjct: 21  IAAVFLFVAGIFGLYRFLWATPQQSERPHIARVQISGLIQDNTELLERLDKIAKSDNVKG 80

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           LIVS+SSPGG+ Y GE IF+AI+ V  +KPV+++V  +AASAGY+I+ A ++IVA ETS+
Sbjct: 81  LIVSISSPGGTTYGGERIFKAIRGVAEKKPVVSDVRTLAASAGYMIASAGDVIVAGETSI 140

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIGV+FQYP +   +DKLGVS++ +KSSPMKAEPSPF E   +A  M++ +V  SY W
Sbjct: 141 TGSIGVIFQYPQIGQLMDKLGVSLQEIKSSPMKAEPSPFHEAPEEAKTMIRSMVMDSYGW 200

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           FV LV++ R +P +  L L+DG I+TG +A    L+D +GG++E+       GV + +  
Sbjct: 201 FVDLVADRRKLPREDVLKLADGSIFTGRQALANKLVDTLGGEKEIRGYFETRGVAKDLPI 260

Query: 249 IKDWNPPKNYWFCDLKNLSISSLL--EDTIPL-------MKQTKVQGLWAVWN 292
           ++   P  +  F       I+ LL  +D IP          +  + GL +VW 
Sbjct: 261 VEWRAPSSSSPFSLFSVAQIAKLLGYDDLIPFAGSGQLGADKLFLDGLVSVWQ 313


>gi|217976339|ref|YP_002360486.1| signal peptide peptidase SppA, 36K type [Methylocella silvestris
           BL2]
 gi|217501715|gb|ACK49124.1| signal peptide peptidase SppA, 36K type [Methylocella silvestris
           BL2]
          Length = 324

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 93/297 (31%), Positives = 155/297 (52%), Gaps = 12/297 (4%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66
           +I      +  V    +  + S      +PH+AR++I G I   ++ ++ I RI   D A
Sbjct: 24  RILAFGAAVIGVLAIGLRLASSDDSVSFAPHIARLSISGLITGDRDTLKLISRIEESD-A 82

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
            A++VS+ SPGG+    E ++  ++++  +KP +  V  +AAS GY+ +  ++ IVA   
Sbjct: 83  AAVLVSIDSPGGTTAGAERLYDQLRRLSAKKPTVAVVGSLAASGGYIAALGADQIVALGN 142

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           SLVGSIGVL +YP V   LD +GV +++VKSSP+KA P+ F   +P+A   +  +VD S+
Sbjct: 143 SLVGSIGVLVEYPNVTKLLDTVGVKVEAVKSSPLKAAPNGFEPTSPEARAALASLVDDSF 202

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
            WF  LV E RN+   +   + DGR++TG +   + L+D +GG+ E    L         
Sbjct: 203 VWFKDLVRERRNLTAPQLAAVDDGRVFTGRQGLGLHLVDRLGGEREAIAWLEQERAVPKG 262

Query: 247 RKIKDWNPPKNYWFCDLKNLSI-----------SSLLEDTIPLMKQTKVQGLWAVWN 292
            KI+DW    ++    L + +            S LL  +   ++   + GL ++W 
Sbjct: 263 LKIRDWKQQGSFGRIGLFSFAARAASIFHLDELSRLLGRSSQFVEARMLDGLVSIWQ 319


>gi|332702712|ref|ZP_08422800.1| signal peptide peptidase SppA, 36K type [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552861|gb|EGJ49905.1| signal peptide peptidase SppA, 36K type [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 305

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 129/262 (49%)

Query: 21  TVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSA 80
            +  F      E     +  + + G I  S++L+  I  + RDDS   +++ + SPGG  
Sbjct: 34  AMAAFHLLPTGEFAGARLGVVRVEGLIVGSEDLVGWIGELERDDSIKGVLLRIDSPGGVV 93

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
              + ++ A+ ++  RKPVI  +  +AAS GY I+ A+  I+A  ++L GSIGV  +   
Sbjct: 94  APSQEVYAAVLRLAERKPVIASMGAVAASGGYYIAAAAQEIMANPSTLTGSIGVRMELLN 153

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           ++   +K+G+S   + S  MK   +PF E++P+  + +  VV   +  FV  ++++R + 
Sbjct: 154 IRALAEKVGLSQTLITSGEMKGAGTPFREMSPREREYLTAVVMDMHDQFVSDIAQARGME 213

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
            ++   L+DGR +TG +A  +GL+D +GG E+    L           + +    +    
Sbjct: 214 REQVAALADGRAFTGRQAHGLGLVDHLGGMEDAMDLLRERCGLTGETPVLEGPIEEKSLL 273

Query: 261 CDLKNLSISSLLEDTIPLMKQT 282
             + + +I   + + +  M   
Sbjct: 274 LRVLSAAIIEPVSEAVSEMTSA 295


>gi|300691993|ref|YP_003752988.1| peptidase S49 [Ralstonia solanacearum PSI07]
 gi|299079053|emb|CBJ51715.1| Peptidase S49 [Ralstonia solanacearum PSI07]
          Length = 378

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 128/291 (43%), Gaps = 15/291 (5%)

Query: 7   KIKTRYVMLSLVT-LTVVYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60
           +I  R+V L+++  L  V  S+      +  H A + + G+I       +  +   +E  
Sbjct: 92  RIFFRFVTLAIIGGLLYVLASFEGETVSSGRHTALVTLDGEIAANTNASADNINASLEAA 151

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCA 117
             DD+   +I+ ++SPGGS      I   I++++ +   I     V EM AS GY ++ A
Sbjct: 152 FADDNTAGVILKINSPGGSPVQAGMINDDIRRLRAKYKNIPLYVVVEEMCASGGYYVAAA 211

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           ++ I   + S+VGSIGVL         +DKLGV  + + +   K    PFS V P+  Q 
Sbjct: 212 ADKIYVDKASIVGSIGVLMDGFGFTGLMDKLGVERRLLTAGTNKGMLDPFSPVPPQQRQF 271

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
            Q ++D  +  F+ +V + R         L  G  WTGA+A ++GL D +G  + V +  
Sbjct: 272 AQAMLDEVHQQFIDVVKQGRGSRLKDDPQLFSGLFWTGAKAVELGLADGIGSADFVAR-- 329

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                      + D+   +N+     +    +        L    +++ L 
Sbjct: 330 ----NVIKAPDMVDYTVKENFAERVARKFGTAMGAGAIKALAATGELKLLM 376


>gi|299067011|emb|CBJ38206.1| Peptidase S49 [Ralstonia solanacearum CMR15]
          Length = 378

 Score =  153 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 127/291 (43%), Gaps = 15/291 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60
           +I  R+V L ++   +  F S+      +  H A + + G+I       +  +   ++  
Sbjct: 92  RIFFRFVTLGIIGGLLYLFASFEGETVSSGRHTALVTLDGEIAANTNASADNINASLDAA 151

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCA 117
             DD+   +I+ ++SPGGS      I   I++++ +   I     V EM AS GY ++ A
Sbjct: 152 FADDNTAGVILKINSPGGSPVQAGMINDDIRRLRAKYKDIPLYVVVEEMCASGGYYVAAA 211

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           ++ I   + S+VGSIGVL         +DKLGV  + + +   K    PFS V P+  Q 
Sbjct: 212 ADKIYVDKASIVGSIGVLMDGFGFTGLMDKLGVERRLLTAGTNKGMLDPFSPVAPQQRQF 271

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
            Q ++D  +  F+ +V + R         L  G  WTGA+A  +GL D +GG + V +  
Sbjct: 272 AQAMLDEVHQQFIDVVKQGRGSRLKDDPQLFSGLFWTGAKAVDLGLADGIGGTDFVAR-- 329

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                      + D+   +N+     +    +        L    +++ L 
Sbjct: 330 ----NVIKAPDLVDYTVKENFAERVARKFGTAMGAGAIKALAATGQLKLLM 376


>gi|118580963|ref|YP_902213.1| signal peptide peptidase SppA, 36K type [Pelobacter propionicus DSM
           2379]
 gi|118503673|gb|ABL00156.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Pelobacter propionicus DSM 2379]
          Length = 295

 Score =  153 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 133/290 (45%), Gaps = 7/290 (2%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA------RIAIRGQIEDSQELI 54
           M   +  I +  V++      V        + D    +A       + +RG I DS+E +
Sbjct: 1   MSKKMLMIISAVVIVLGGLFVVSMLIARVLLGDADVKIAGNRGVGLVEVRGMILDSRETV 60

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114
            ++    + D   A+++ + SPGG     + I   ++K   RK +I  +  +AAS GY +
Sbjct: 61  RQLRYFLKQDEIRAVVLRVDSPGGVVAPSQEICEEVRKFAARKKIIVSMGSLAASGGYYV 120

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           S  + +I A   +L  SIGV+ +   ++  +D++G+   ++K+   K   SP  +++   
Sbjct: 121 SAPATLIYANPGTLTASIGVILKLSNIETLMDRIGIKSHTLKTGKYKDSGSPLRKLSEDD 180

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
             M+Q V+DS++  FVR V+  R +P  +   ++DGRI +G +A  + L+D +G  ++  
Sbjct: 181 RAMLQSVIDSTHEQFVRAVASGRKLPVQQVRRIADGRILSGEQALALKLVDRLGTLQDAI 240

Query: 235 QSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
           +    L   +   ++    P K   + DL        LE  +       +
Sbjct: 241 EEAGRLSGIEGEPEVV-LPPRKKVNYWDLLADGTEGALEKALGRASGGML 289


>gi|330815967|ref|YP_004359672.1| Peptidase, U7 family protein [Burkholderia gladioli BSR3]
 gi|327368360|gb|AEA59716.1| Peptidase, U7 family protein [Burkholderia gladioli BSR3]
          Length = 338

 Score =  153 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 129/286 (45%), Gaps = 14/286 (4%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIERISR 62
            +  ++++ +V +  ++         +S H A + I G+I      +++++   ++    
Sbjct: 57  FRFLWLIVFVVLVFALFDFSGDGKLSSSRHTALVTIDGEIAAGTNANAEDINSALDDAFE 116

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCASN 119
           D     +++ ++SPGGS      ++  I++++ +   KP+   V +M AS GY I+ A++
Sbjct: 117 DSGTVGVVLRINSPGGSPVQAGIVYDEIRRLRKKYPSKPLYVVVSDMCASGGYYIASAAD 176

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179
            I   + S+VGSIGVL         +DKLGV  +   S   K    PFS   PK  +  Q
Sbjct: 177 KIYVNQASIVGSIGVLMDGFGFTGLMDKLGVQRRLHTSGENKGFFDPFSPETPKMDEHAQ 236

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
            ++D  +  F++ V + R     ++  +  G  WTGA++ ++GL D  G  + V + +  
Sbjct: 237 AMLDEIHAQFIQAVKDGRGKRLHESPEIFSGLFWTGAKSVELGLADGFGTTDTVARDVLK 296

Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
                    I D+   ++      +    +         + ++ V+
Sbjct: 297 ------APDIVDYTVKESLSNRVARRFGAAIGGGAVKSALSESGVR 336


>gi|75674258|ref|YP_316679.1| peptidase S49, SppA [Nitrobacter winogradskyi Nb-255]
 gi|74419128|gb|ABA03327.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Nitrobacter winogradskyi Nb-255]
          Length = 327

 Score =  153 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 88/301 (29%), Positives = 153/301 (50%), Gaps = 15/301 (4%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66
           ++ +  +++  V     Y S        S  + R+ I G I   Q+ +E +ER+ +   A
Sbjct: 24  RVASALIVIGAVVALGAYASPLGGRLTGSSAIQRVNIDGLIRSDQKRVEALERLGK-SKA 82

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
            A+IV ++SPGG+    E ++ A+ ++K +KP++  V  + AS GY+ + AS+ IVA +T
Sbjct: 83  PAVIVHINSPGGTTAGSEELYEALTRLKAKKPMVVVVEGLGASGGYIAALASDHIVAQQT 142

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           +LVGSIGVLFQYP V   L  +GV +++VKSSP+KA PS +   +P+A   +  +V  S+
Sbjct: 143 ALVGSIGVLFQYPNVTELLKTVGVKVEAVKSSPLKAAPSGYEPTSPEARAAIDALVKDSF 202

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
            WF  LV   R +   +   ++DGR++TG +A  + LID +G ++     L A       
Sbjct: 203 AWFRGLVQNRRGMDDAQLEKVADGRVFTGRQALDLKLIDQLGDEKVAIAWLVAEKKVAPD 262

Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLED--------------TIPLMKQTKVQGLWAVWN 292
             ++D+     +        + S   +                +    +  + G+ A+W+
Sbjct: 263 LPVRDFKLTPRFTDLTFIRTAASVAFDALGLGSIARQVEQAGIVRAADRLNLDGMLALWH 322

Query: 293 P 293
           P
Sbjct: 323 P 323


>gi|302344134|ref|YP_003808663.1| signal peptide peptidase SppA, 36K type [Desulfarculus baarsii DSM
           2075]
 gi|301640747|gb|ADK86069.1| signal peptide peptidase SppA, 36K type [Desulfarculus baarsii DSM
           2075]
          Length = 300

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 67/259 (25%), Positives = 126/259 (48%), Gaps = 3/259 (1%)

Query: 35  SPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
              V  + + G I  +  +I  ++    DDS  A+++ + SPGG   A + IFR + +  
Sbjct: 40  GKKVGVVEVSGTITSAAPVIFDLQDFREDDSIKAIVLRVDSPGGGVAASQEIFREVARTA 99

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
             KPV+  + E+AAS GY ++     I+A+  ++ GSIGV+   P V     KLGV ++ 
Sbjct: 100 EVKPVVCSMGEVAASGGYYVAAPCTKIMASPGTITGSIGVIASVPDVTDLFGKLGVRMQY 159

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
           V++  +K   +P   ++P    M+Q ++D S+  F+  V+ +R +   K   ++DGR+  
Sbjct: 160 VQAGKLKGAGAPGRPLSPDERDMLQQIIDLSHRQFIDDVASARKLDKAKLRAVADGRVIL 219

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLED 274
           G  A  +GL+D  G   +       L       ++      ++ W  +L    +S+ +  
Sbjct: 220 GEAAVGLGLVDETGNFNDAVDLAAELAHIDGQPELIWPADEESSWLGNLVQEQVSTAVRA 279

Query: 275 TIPLMKQTKVQGLWAVWNP 293
               +++ +VQ    ++NP
Sbjct: 280 IADNLQKPRVQ---YIFNP 295


>gi|224369572|ref|YP_002603736.1| SppA [Desulfobacterium autotrophicum HRM2]
 gi|223692289|gb|ACN15572.1| SppA [Desulfobacterium autotrophicum HRM2]
          Length = 300

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 129/265 (48%), Gaps = 2/265 (0%)

Query: 9   KTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66
               + +++V  T   FS   S+    +  ++  + I G I  S+E+ ++++    D + 
Sbjct: 21  FALVLTVAIVMGTSAMFSSTLSTPFNTDQGNIGIVEIVGVIASSKEVSQQLKDFREDPAI 80

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
            A+++ + SPGG     + I+R I K K  K VI  +  +AAS GY  + A++ ++A   
Sbjct: 81  KAIVLRIDSPGGGVGPSQEIYREIIKTKKIKKVIASLGSVAASGGYYAASATDAVIANPG 140

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           ++ GSIGV+ +Y  ++  ++K+G++   +KS   K   SP  E+ PK   ++Q V D  +
Sbjct: 141 TITGSIGVIMEYANLQKIMEKIGLTPVVIKSGEFKDMGSPVREITPKERAILQGVADEVH 200

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
             FVR V+  R++   +   L+DGRI+TG  A  + L+D +G  E+       +   +  
Sbjct: 201 QQFVRDVASGRSLEQAQVEKLADGRIYTGETALDLHLVDRLGNLEDAIAWAGEMAGIKGK 260

Query: 247 RKIKDWNPPKNYWFCDLKNLSISSL 271
                    +   F +L +      
Sbjct: 261 VNPVYPREKRLGIFKELVSTLFKQA 285


>gi|39996336|ref|NP_952287.1| signal peptide peptidase SppA, 36K type [Geobacter sulfurreducens
           PCA]
 gi|39983216|gb|AAR34610.1| signal peptide peptidase SppA, 36K type [Geobacter sulfurreducens
           PCA]
          Length = 260

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 61/250 (24%), Positives = 128/250 (51%), Gaps = 1/250 (0%)

Query: 35  SPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
              +    ++G I DSQE +++++ + +  S  A+++ + SPGG     + I+ A++++ 
Sbjct: 7   GDGIGYAEVKGPIIDSQETVKQLDDLRKKSSVKAVVLRVESPGGVIGPSQEIYAAVKRLA 66

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
             K V+  +  +AAS GY ++  + +I A   ++ GSIGVL +   ++  +DK+G+   +
Sbjct: 67  ATKKVVVSMGSVAASGGYHVAVPAAVIYANPGTITGSIGVLMKLSNIEGLMDKVGLKAFT 126

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
           +KS   K   SP  ++  +   ++Q V+D+ +  FVR V+E R +P ++   L+DGR++T
Sbjct: 127 LKSGKFKDSGSPVRKLTEEERAVLQGVIDNLHDQFVRAVAEGRQLPVEEVRRLADGRVYT 186

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLED 274
           G +A ++ L+D +G   +       L   +    +    P K     D+    ++  +  
Sbjct: 187 GEQALRLKLVDRLGTLHDAVMEAGRLAGIEGEPTLI-IPPKKRKLLRDMLFGEVAEAVRG 245

Query: 275 TIPLMKQTKV 284
           ++   +    
Sbjct: 246 SVRKEEGLSF 255


>gi|91789506|ref|YP_550458.1| peptidase S49 [Polaromonas sp. JS666]
 gi|91698731|gb|ABE45560.1| peptidase S49 [Polaromonas sp. JS666]
          Length = 361

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 67/272 (24%), Positives = 122/272 (44%), Gaps = 13/272 (4%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERIS 61
            ++  ++   +  + ++    +   +  +PH A + I+G+I    +     +   +    
Sbjct: 82  FVRLAWLAFFIALVWMLLHRGTPATDAAAPHTAVVEIKGEIAAGADASAEFVNAALRAAF 141

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASN 119
            DD A A+++ ++SPGGS      +   I ++K  ++KPV   V E  ASA Y I+ A++
Sbjct: 142 EDDGAKAVVLLINSPGGSPVQAGMMNDEILRLKIKHKKPVYAVVEESCASAAYYIAVAAD 201

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179
            I   + S+VGSIGVL         +DKLGV  + + +   K    PFS  + K     Q
Sbjct: 202 KIYVDKASIVGSIGVLMDGFGFTGLMDKLGVERRLLTAGENKGFLDPFSPQSDKQRVYAQ 261

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
            ++D  +  F+ +V   R     +   +  G  W+G +A ++GL D +GG E V + +  
Sbjct: 262 AMLDQIHQQFITVVKAGRGKRLKEMPEMFSGLFWSGQQAVELGLADQLGGLEYVAREVVK 321

Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
                   +I D+   +N      K    +  
Sbjct: 322 ------AEEIIDYTRRENVAERLAKKFGAAMG 347


>gi|113868537|ref|YP_727026.1| periplasmic serine protease (ClpP class) [Ralstonia eutropha H16]
 gi|113527313|emb|CAJ93658.1| periplasmic serine protease (ClpP class) [Ralstonia eutropha H16]
          Length = 394

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 126/292 (43%), Gaps = 17/292 (5%)

Query: 7   KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           +I  R+V   +L+L+ +T+  F     +  +  H A + + G+I       ++ +   ++
Sbjct: 108 RIFFRFVGLALLALILVTLFDFKGDGAISTSGRHTAMVTLEGEIAAGTPASAESINASLQ 167

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLIS 115
               D +A  +I+ ++SPGGS      I   IQ++      KP    V E+ AS GY ++
Sbjct: 168 AAFADGNAAGVILKINSPGGSPVQAGIINDEIQRLRTLYPSKPFYVVVEEICASGGYYVA 227

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         +DKLGV  +   S   K    PFS   PK  
Sbjct: 228 AAADKIYVDKASIVGSIGVLMDGFGFTGLMDKLGVERRLYTSGANKGMLDPFSPQVPKQK 287

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              + ++   +  F+ +V E R         L  G  W+G  A ++GL D +G  + V +
Sbjct: 288 AFAEAMLKQIHQQFIDVVKEGRGDRLKDDPELFSGLFWSGERAVELGLADGLGSADYVAR 347

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
            +           I D+   +N      K    +        ++   ++QG+
Sbjct: 348 DVLK------AEDIVDYTVKENIAERVAKRFGAAVGSAAMKTMLWSNRMQGM 393


>gi|167629015|ref|YP_001679514.1| signal peptide peptidase sppa, 36k type [Heliobacterium
           modesticaldum Ice1]
 gi|167591755|gb|ABZ83503.1| signal peptide peptidase sppa, 36k type [Heliobacterium
           modesticaldum Ice1]
          Length = 310

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 143/294 (48%), Gaps = 23/294 (7%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------ELIERIERI 60
           S++ +     +  +        VA + + G I D+                +++E + R+
Sbjct: 19  SVLLILFRPGAHRADGPSAGNTVAVVRLEGMIADAGAGAGAGLLGGESGSGQVLEALRRL 78

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASN 119
            +D    A+++ ++SPGG++ A + I R + +++   K V+  + ++AAS GY ++  ++
Sbjct: 79  QQDKQIKAVVLRINSPGGTSAASQEIGREVDRLRESGKVVVASMGDVAASGGYWVAARAD 138

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179
            IVA   +  GSIGV+     +     K+G     +KS P K   S   E+ P+   ++Q
Sbjct: 139 KIVANAATTTGSIGVILDLANLTELYQKIGYRPNVIKSGPYKDIASSAREMTPEERAILQ 198

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
            +VD  Y  F+ +V+E R++P+++   L+DGR++TG +AK++GL+D +G   +       
Sbjct: 199 GMVDDIYQQFIDVVAEGRHMPHEQVRALADGRVFTGRQAKELGLVDELGNFYDAVALAGT 258

Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
           +   +   +I+++    +     L  ++ + L   T+  ++      L  +  P
Sbjct: 259 MAGIRGEPEIREYG-RGSALDRLLSGMTSTGLFGQTLSPVR------LLDLLQP 305


>gi|221214108|ref|ZP_03587081.1| peptidase S49 [Burkholderia multivorans CGD1]
 gi|221166285|gb|EED98758.1| peptidase S49 [Burkholderia multivorans CGD1]
          Length = 330

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 66/286 (23%), Positives = 122/286 (42%), Gaps = 17/286 (5%)

Query: 7   KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           KI  R+    +  L+   ++ FS  +       H A + I G+I      +++++   ++
Sbjct: 44  KIFFRFAFLAVFLLLAFALIDFSSDAKFASGGRHTALVTIDGEIAAGTNANAEDINTALD 103

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLIS 115
               DD    +++ ++SPGGS      ++  I+++      KP+   V +M AS GY I+
Sbjct: 104 AAFEDDGTAGVVLRINSPGGSPVQAGMVYDEIRRLRGKYPDKPLYVVVTDMCASGGYYIA 163

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         + KLGV  +   S   K    PFS   PK  
Sbjct: 164 SAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFYDPFSPETPKMD 223

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q+++D  +  F++ V + R     +T  +  G  WTG ++ ++GL D  G  + V +
Sbjct: 224 AHAQELLDQVHAQFIKAVKDGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDSVAR 283

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
            +           + D+   ++      +    +        L   
Sbjct: 284 EVIK------APDLVDYTVKESLTNRVARKFGAAVGGAAMKALTAA 323


>gi|312131830|ref|YP_003999170.1| signal peptide peptidase sppa, 67k type [Leadbetterella byssophila
           DSM 17132]
 gi|311908376|gb|ADQ18817.1| signal peptide peptidase SppA, 67K type [Leadbetterella byssophila
           DSM 17132]
          Length = 581

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 71/260 (27%), Positives = 129/260 (49%), Gaps = 11/260 (4%)

Query: 30  HVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPGGSA 80
               +S  VA I   G+I D         ++E I+ I+R  +D    A+++ ++SPGGSA
Sbjct: 293 KESTSSDRVAVIVSEGEIVDGNGGEGFIAAEEFIKEIKRARKDKKVKAIVLRINSPGGSA 352

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
            A + ++R IQ  K  KPV   +  +AAS GY ++   + IVA  T++ GSIG+      
Sbjct: 353 MASDKMWREIQLTKKEKPVFASMGNVAASGGYYMAMGCDTIVAHPTTITGSIGIFGVMLN 412

Query: 141 VKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            + F+ DKLGV+   V +      PS   ++     Q +Q++++  Y  F    ++ R +
Sbjct: 413 FQKFMNDKLGVTFDEVSTHTYSNSPSSVKKMTEVEKQSIQNMINKGYESFTTKAAQGRKM 472

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
             ++   L+ GR+WTG +AK+ GL+D++G  +   +        +   ++K +  PK+ +
Sbjct: 473 DLNELKSLAGGRVWTGEQAKENGLVDILGDLDTAIELAAKKAGIKD-YQVKYYPYPKSDF 531

Query: 260 FCDLKNLSISSLLEDTIPLM 279
              ++  + S      I  +
Sbjct: 532 DRLIEKFTKSGSEAQLIEKL 551



 Score = 83.1 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/297 (12%), Positives = 101/297 (34%), Gaps = 26/297 (8%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQ-------ELIERI 57
           + +  ++ S     E     V ++ + G+             I   +       EL   +
Sbjct: 26  MGIGSMFSSSEGTSEVKEGTVLKLDLDGKFTDLKKPEDPFTGILGDEINYISIRELQTSL 85

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117
           +  + D     + +S++ P       E +  A+   K     I    +  +    L+   
Sbjct: 86  KNAALDPKIKGISISINDPSMGFAELEEVRSALLNFKKSGKFIYTYGDYLSEKAILLCAV 145

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVNPKAV 175
           ++         V   G+  +  Y +  L+KLG+     +    K+   P+   +++  + 
Sbjct: 146 ADSAFIHPEGSVEFNGLSSEITYFQGTLEKLGIEPIIFRVGEYKSAVEPYFRKDMSEASK 205

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVW 234
           + ++  + S  H      ++ +N        L +   I+T  EA K  L+  V   ++  
Sbjct: 206 EQIKSYLGSISHKVYSNFAQDKNWALASVDSLLNKAPIFTSDEALKFDLVQAVAYADQYE 265

Query: 235 QSLYALGVDQSIRK--IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
            ++      + +    +  ++  K        +  ++ ++ +   ++     +G  A
Sbjct: 266 DAIKNKLGVKKVEYATLSTYSKAKKLIKESTSSDRVAVIVSEG-EIVDGNGGEGFIA 321


>gi|237800341|ref|ZP_04588802.1| peptidase S49, SppA [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023198|gb|EGI03255.1| peptidase S49, SppA [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 332

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 121/291 (41%), Gaps = 18/291 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61
             K        V + +            S H A I ++G I D     ++ ++  +++  
Sbjct: 49  FFKLLTFAFLFVAVVLPMLDLEGGASRRSSHTALIDVQGVIADKEAASAENIVTALQKAF 108

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118
            D+    +I+ ++SPGGS      ++  I++++  KP I     +    AS  Y I+ A+
Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRATKPDIKVYAVITDLGASGAYYIASAA 168

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I A + SLVGSIGV          ++KLGV  ++  S   KA   PF        Q  
Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGTMEKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Q V+D+++  F+  V + R           L  G +WTG +A  +GL+D +G    V + 
Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKDHPELFSGLVWTGEQAVGLGLVDGLGNASYVARE 288

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           L         R I ++   ++ +    K +  S  + + I  +       L
Sbjct: 289 LIK------ERDIVEYTVEESPFDRFSKKIGTS--MAERIATLVGFSGPTL 331


>gi|85714139|ref|ZP_01045128.1| peptidase S49, SppA [Nitrobacter sp. Nb-311A]
 gi|85699265|gb|EAQ37133.1| peptidase S49, SppA [Nitrobacter sp. Nb-311A]
          Length = 327

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 154/301 (51%), Gaps = 15/301 (4%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66
           ++ +  +++  V     Y +        +  + R++I G I   Q+ +E +ER+ +  SA
Sbjct: 24  RVASALIVIGAVIAVGAYATPWGGKLTGASAIQRVSINGLIRSDQKRVEALERLGK-SSA 82

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
            A+IV ++SPGG+    E ++ A+ ++K +KP++  V  + AS GY+ + AS+ IVA +T
Sbjct: 83  PAVIVHINSPGGTTAGSEELYDALTRLKAKKPMVVVVEGLGASGGYIAALASDHIVAQQT 142

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           +LVGSIGVLFQYP     L  +GV ++++KSSP+KA P+ +   +P+A   +  +V  S+
Sbjct: 143 ALVGSIGVLFQYPNFTELLKTVGVQMEAMKSSPLKAAPNGYEPTSPEARAAIDALVKDSF 202

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
            WF  LV + R +   +   ++DGR++TG +A  + LID +G ++     L A       
Sbjct: 203 DWFRGLVRDRRGMDDAQLEKVADGRVFTGRQAVNLKLIDQLGDEKVAIAWLVAEKKVAPD 262

Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDT--------------IPLMKQTKVQGLWAVWN 292
             ++D+     +        + S   +                +    +  + G+ A+W 
Sbjct: 263 LPVRDFKLSPRFTDLTFLRTAASVAFDALGLNSIARQVEQTGFVGAADRLGLNGMLALWQ 322

Query: 293 P 293
           P
Sbjct: 323 P 323


>gi|307150266|ref|YP_003885650.1| signal peptide peptidase SppA, 67K type [Cyanothece sp. PCC 7822]
 gi|306980494|gb|ADN12375.1| signal peptide peptidase SppA, 67K type [Cyanothece sp. PCC 7822]
          Length = 599

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 65/269 (24%), Positives = 131/269 (48%), Gaps = 9/269 (3%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATA 68
           ++L+       +  + ++  +A +   G+I D +            + + +I +D +  A
Sbjct: 292 ISLSTYAEGLLNENQASTNQIAVVYADGEIVDGEGTVNNIGGERFAKELRKIRQDPNIKA 351

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           +++ ++SPGGSA A E I R I  +  +KP++  +  +AAS GY IS  ++ I A  +++
Sbjct: 352 VVLRVNSPGGSATASEIIGREIHLISQQKPIVVSMGNVAASGGYWISAGASHIFAEPSTI 411

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIGV      ++   +  GVS   +K++ +    +       + + + +  V   Y+ 
Sbjct: 412 TGSIGVFGLLFNIQKIANDNGVSWDVIKTAKLADINTSTRPKTEQELAIYKRSVGQVYNL 471

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           F+  VS+SRN+  +K   ++ GR+W+G +AKK+GL+D +GG E                 
Sbjct: 472 FIEKVSQSRNLSPEKVREIAQGRVWSGQDAKKIGLVDELGGLEAAIDYAAKQANLGKNWT 531

Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
           I+++   + +    L+ L  + + +   P
Sbjct: 532 IQEYPSRRTFESVILEKLFQTKIQDSLTP 560



 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 91/241 (37%), Gaps = 5/241 (2%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAG--EAIFRAIQKVKNRKPVITEVHEMAA 108
           + L+  +E+ S+D     + +                + +A++  +     I        
Sbjct: 84  RSLLNVVEKASKDSRIMGIFIDGRGVEADNGYATLSEVRKALEDFRAAGKKIVFYDVDLD 143

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167
              Y ++  ++ +V     ++   G+  Q  ++   L K G+ ++ V+    K+   P+ 
Sbjct: 144 EKKYFLASVADQVVLNPMGMMELNGIGVQPMFLAGALKKYGIGVQVVRVGEYKSAVEPYI 203

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLID 225
             +++P      Q +++  +  F+  VS SR I   K   ++D   +    EA+K+GL+D
Sbjct: 204 RQDLSPANRLQTQVLLNDLWANFLTTVSSSRKISATKLQDIADNQGVLMPKEAEKLGLVD 263

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
            V   +EV   L       S           + +   L N + +S  +  +       V 
Sbjct: 264 RVAYFDEVLADLKKQTGQTSADDKTFAQISLSTYAEGLLNENQASTNQIAVVYADGEIVD 323

Query: 286 G 286
           G
Sbjct: 324 G 324


>gi|308174636|ref|YP_003921341.1| signal peptide peptidase [Bacillus amyloliquefaciens DSM 7]
 gi|307607500|emb|CBI43871.1| signal peptide peptidase [Bacillus amyloliquefaciens DSM 7]
 gi|328554562|gb|AEB25054.1| signal peptide peptidase [Bacillus amyloliquefaciens TA208]
 gi|328912966|gb|AEB64562.1| signal peptide peptidase [Bacillus amyloliquefaciens LL3]
          Length = 335

 Score =  152 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 68/319 (21%), Positives = 144/319 (45%), Gaps = 42/319 (13%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSS------------------------HVEDNSPHVARI 41
           K+     + + +  ++V+                                      +A +
Sbjct: 4   KRWIALVIAIGIFGVSVIASVTVGVLKNVGDTGGGFASLTDDSEEVTLDEGSPGSKIAVL 63

Query: 42  AIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
            + G IEDS              +  ++ IER   D +   +++ ++SPGG  Y    I 
Sbjct: 64  EVDGTIEDSGESAGLLSSGGYDHRSFLKHIERAKEDKNVKGIVLKINSPGGGVYESAEIH 123

Query: 88  RAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           + ++++K   +KP+   +  MAAS GY IS A++ I A+  +L GS+GV+ +        
Sbjct: 124 KKLEELKKETKKPIYVSMGSMAASGGYYISTAADKIYASPETLTGSLGVIMESVNYSKLA 183

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           D+LG+  +++KS   K   SP  ++  +  ++MQ +V+ SY  FV ++S+ R++      
Sbjct: 184 DELGIKFETIKSGAHKDIMSPTRDMTKEERKIMQTMVNDSYEGFVNVISKGRHMSKADVK 243

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            ++DGR++ G +AKK+GL+D +G  ++   ++     +     +  +   + +    L +
Sbjct: 244 KIADGRVYDGRQAKKIGLVDELGFYDDTISAMKKDHKNMKNASVITYE--EGFGLGSLFS 301

Query: 266 LSISSLLEDTIPLMKQTKV 284
           +S + + +  I  +   ++
Sbjct: 302 MSAAKMFKSEIDFLNMKEL 320


>gi|86747765|ref|YP_484261.1| signal peptide peptidase SppA, 36K type [Rhodopseudomonas palustris
           HaA2]
 gi|86570793|gb|ABD05350.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49
           [Rhodopseudomonas palustris HaA2]
          Length = 321

 Score =  152 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 93/297 (31%), Positives = 161/297 (54%), Gaps = 11/297 (3%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66
           ++    V +  V       S +      S  +ARI I G I  + E +E +ER+ + +SA
Sbjct: 22  RVAAVLVAIGAVIAVGAMVSPAGPALTTSGSIARIKIDGLIRSNSERVEALERLEKSNSA 81

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
            A+IV ++SPGG+    E ++ A+ ++K +KP++  V  +AAS GY+ + AS+ I+A ++
Sbjct: 82  -AVIVHINSPGGTTAGSEELYTALMRLKAKKPMVVVVEGLAASGGYIAALASDHIIAQQS 140

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           SLVGSIGVLFQYP V   +  +GV ++ VKSSP+KA P+ F   +P+A   ++ +V  SY
Sbjct: 141 SLVGSIGVLFQYPNVSELMKTVGVKVEEVKSSPLKAAPNGFEPTSPEARAALESLVRDSY 200

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
            WF  LV + R +  D+  +++DGR++TG +A  + LID +G ++     L      +S 
Sbjct: 201 AWFRDLVKQRRAMDDDQLGIVADGRVFTGRQAVGLKLIDQLGDEKTAVAWLETEKRVKSG 260

Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLED-TIPLMKQ---------TKVQGLWAVWNP 293
             ++D+     +        + S  L+   + ++ +           + G+ A+W P
Sbjct: 261 LPVRDFKLSPQFGDLTFLRAAASITLDALGLGVIARQVEQSGAMHLGLDGMLALWVP 317


>gi|311745841|ref|ZP_07719626.1| signal peptide peptidase SppA, 67K type [Algoriphagus sp. PR1]
 gi|126576044|gb|EAZ80322.1| signal peptide peptidase SppA, 67K type [Algoriphagus sp. PR1]
          Length = 588

 Score =  152 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 72/276 (26%), Positives = 137/276 (49%), Gaps = 10/276 (3%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------SQELIERIERISRDDSA 66
           +S +  T +  +  +    +S  +A I   G+I D        S +  + I +  +DD+ 
Sbjct: 285 ISTINATKLNTTVKTKNITSSNRIAVILAEGEIVDGSVEGAISSDKFAKEIRKARKDDNI 344

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
            A+++ ++SPGGS  A E I+R + + K  KP+   + E+AAS GY IS  ++ IVA   
Sbjct: 345 KAIVLRVNSPGGSVLASEVIWREMTEAKKAKPLYVSMGEVAASGGYYISAPADTIVAQPN 404

Query: 127 SLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
           ++ GSIG+   +   +  L +KLG++   V++  +    +P  E+     +++Q  V+  
Sbjct: 405 TITGSIGIFGIWFNAQELLNEKLGITSDVVETGQLSDFMNPTRELTDIERKIVQTNVEKG 464

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  F+  VSE R +  +    ++ GR+WTG +AK+ GL+DV+G  ++  +         S
Sbjct: 465 YETFISRVSEGRGMSAEAVKEVASGRVWTGNQAKERGLVDVLGSLDDTIELAAERIDASS 524

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
             ++  + P +  WF  + N   +++    +     
Sbjct: 525 DYRVIYY-PQQKPWFETIMNEFSNNVQLRILKSELG 559



 Score = 93.5 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 106/306 (34%), Gaps = 29/306 (9%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRG-QIED---SQELI-------------- 54
           +++S   + ++  S S  V      +  + + G  I +     +L               
Sbjct: 22  ILVSFGIIGMIAASGSEEVTVKENTILHLNLNGRTIVERTADDDLDLSIFGSGFGGPMTA 81

Query: 55  ------ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
                 + I+    DD+   + ++             I   ++  K+    I    E+  
Sbjct: 82  GLVNLKKAIQAAKEDDNIQGIYLNTGLVNAGQANLLEIREFLEDFKSSGKFILAYDEIFT 141

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167
             GY ++  ++ I       +   G      ++K   DK+GV  +  +    K+   PF 
Sbjct: 142 EGGYYLASVADEIYLNPMGGIDFNGFSSNTLFLKGLFDKVGVKPEVFRVGEFKSAVEPFI 201

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLID 225
            ++++P+     +  +     + ++ ++ESR++  D     ++   +    +A    L+ 
Sbjct: 202 LTQMSPENRLQTEAFLSDMNDFALKNIAESRDVNLDSLTKTNNMMLVREPEDAVTYKLVT 261

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI--PLMKQTK 283
            +  ++E+   L           I   N  K       KN++ S+ +   +    +    
Sbjct: 262 GLAYEDEIHSKLREKLGLGEDDDISTINATKLNTTVKTKNITSSNRIAVILAEGEIVDGS 321

Query: 284 VQGLWA 289
           V+G  +
Sbjct: 322 VEGAIS 327


>gi|294341005|emb|CAZ89400.1| putative Peptidase S49 [Thiomonas sp. 3As]
          Length = 327

 Score =  152 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 66/277 (23%), Positives = 112/277 (40%), Gaps = 15/277 (5%)

Query: 8   IKTRYVMLSLVTLTVV--YFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60
           I  R+V+L +V L       +         PH A I + G+I       +  +   ++  
Sbjct: 46  IFFRFVLLGIVALIFFGGMITEFGSRTATGPHTALIELNGEISIGSQASADNINAALQDA 105

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCAS 118
                   +I+ ++SPGGS      IF  I++++ +  KPV     E+ AS  Y ++ A+
Sbjct: 106 FSSPDTRGVILRINSPGGSPVQASQIFAEIERLRAKYNKPVYAVCEEVCASGAYYVAAAA 165

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           N I     SLVGSIGVL         +DKLGV+ + + +   K    PF+ +        
Sbjct: 166 NDIYVNPASLVGSIGVLMDGFGFSGLMDKLGVTRRLLTAGANKGFMDPFTPMPENQKTYA 225

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
             +++  +  F+  V + R +          G +WTG  A K GL D  G  +++ +   
Sbjct: 226 LGMLEQIHKQFIAAVEKGRGVRLKVNDETFSGLVWTGESAVKQGLADGYGDVDQIARDKI 285

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
                    +I D+   +N      K    S  +   
Sbjct: 286 K------APEIVDYTVQENVAERLAKRFGASLGMGAV 316


>gi|304392326|ref|ZP_07374267.1| signal peptide peptidase A [Ahrensia sp. R2A130]
 gi|303295430|gb|EFL89789.1| signal peptide peptidase A [Ahrensia sp. R2A130]
          Length = 323

 Score =  152 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 103/278 (37%), Positives = 166/278 (59%), Gaps = 13/278 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
            S    +  H+AR++I G I+  + L+E +E+I +DDS   ++++++SPGG+   GE IF
Sbjct: 45  FSGQGASGDHIARVSISGVIQQDRPLLEMLEKIEKDDSVKGVVLTINSPGGTTVGGEDIF 104

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            A++KV  +KPV   V  +AASAGY+I+  S+ IVA  +S+VGSIGV+FQYP     LDK
Sbjct: 105 NAVRKVAEKKPVAASVGTLAASAGYMIATGSDHIVARRSSIVGSIGVIFQYPQAHKLLDK 164

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
           +GVS++ VKS+P+KAEPSPF    P A+ ++++++D SY WFV LV++ R +   + L L
Sbjct: 165 IGVSLEEVKSAPLKAEPSPFHVPPPGAIAVIEELIDDSYQWFVDLVTDRRPLNRAEVLAL 224

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY--------- 258
           +DGRI +G    +  LID +G +E   + + A        ++ DWNP +           
Sbjct: 225 ADGRIMSGDRGVETKLIDAIGDEEAARKWITAKDGIADDLELVDWNPKRKEDSLFFRSQA 284

Query: 259 --WFCDLKNLSISSLLEDTIPLM--KQTKVQGLWAVWN 292
             W      L  ++L ++ +  +  K+  + GL ++W 
Sbjct: 285 RAWVAQQLGLPAAALPDEALDRIIPKRLFLDGLLSLWQ 322


>gi|161525359|ref|YP_001580371.1| peptidase S49 [Burkholderia multivorans ATCC 17616]
 gi|189349904|ref|YP_001945532.1| protease IV [Burkholderia multivorans ATCC 17616]
 gi|160342788|gb|ABX15874.1| peptidase S49 [Burkholderia multivorans ATCC 17616]
 gi|189333926|dbj|BAG42996.1| protease IV [Burkholderia multivorans ATCC 17616]
          Length = 330

 Score =  152 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 66/286 (23%), Positives = 122/286 (42%), Gaps = 17/286 (5%)

Query: 7   KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           KI  R+    +  L+   ++ FS  +       H A + I G+I      +++++   ++
Sbjct: 44  KIFFRFAFLAVFLLLAFALIDFSSDAKFASGGRHTALVTIDGEIAAGTNANAEDINTALD 103

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLIS 115
               DD    +++ ++SPGGS      ++  I+++      KP+   V +M AS GY I+
Sbjct: 104 AAFEDDGTAGVVLRINSPGGSPVQAGMVYDEIRRLRGKYPDKPLYVVVTDMCASGGYYIA 163

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         + KLGV  +   S   K    PFS   PK  
Sbjct: 164 SAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFYDPFSPETPKMD 223

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q+++D  +  F++ V + R     +T  +  G  WTG ++ ++GL D  G  + V +
Sbjct: 224 AHAQELLDQVHAQFIKAVKDGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDSVAR 283

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
            +           + D+   ++      +    +        L   
Sbjct: 284 DVIK------APDLVDYTVKESLTNRVARKFGAAVGGAAMKALTAA 323


>gi|121605973|ref|YP_983302.1| peptidase S49 [Polaromonas naphthalenivorans CJ2]
 gi|120594942|gb|ABM38381.1| peptidase S49 [Polaromonas naphthalenivorans CJ2]
          Length = 360

 Score =  152 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 124/276 (44%), Gaps = 13/276 (4%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERIS 61
            ++  +++  ++ L +     +   + + PH A + I+G+I +  +     +   +    
Sbjct: 81  FVRMSWLLFFIILLWMALQRGTPVTDASVPHTAVVEIKGEIAEGADASAEFVNAALRTAF 140

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASN 119
            D+ + A+++ ++SPGGS      +   I ++K  ++KPV   V E  ASA Y I+ +++
Sbjct: 141 EDEGSKAIVLLINSPGGSPVQAGMMNDEILRLKTKHKKPVYAVVEESCASAAYYIAVSAD 200

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179
            I   + S+VGSIGVL         +DKLGV  + + +   K    PFS  + K     Q
Sbjct: 201 QIFVDKASIVGSIGVLMDSFGFSGLMDKLGVERRLLTAGENKGFLDPFSPQSDKQRAFAQ 260

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
            ++D  +  F+ +V   R     +T  +  G  W G +A ++GL D +G  + V + +  
Sbjct: 261 AMLDQIHQQFIAVVKAGRGKRLKETPEMFTGLFWNGQQAVELGLADHLGNLDYVAREVVK 320

Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
                 + +I D+   +N      K    +      
Sbjct: 321 ------VEEIIDYTRRENVAERLAKKFGAAMGEGAM 350


>gi|92115699|ref|YP_575428.1| signal peptide peptidase SppA, 36K type [Nitrobacter hamburgensis
           X14]
 gi|91798593|gb|ABE60968.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Nitrobacter hamburgensis X14]
          Length = 325

 Score =  152 bits (382), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 83/270 (30%), Positives = 141/270 (52%), Gaps = 15/270 (5%)

Query: 38  VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
           + R+ I G I + Q  +E +ER+ +  +A A+IV ++SPGG+    E ++ A+ ++K +K
Sbjct: 53  IQRVNIEGLIRNDQNRVEALERLGK-SNAPAVIVHINSPGGTTAGSEQLYDALMRLKAKK 111

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
           P++  V  + AS GY+ + AS+ I+A +T+LVGSIGVLFQYP     L  +GV ++ VKS
Sbjct: 112 PMVVVVDGLCASGGYIAALASDHIIAQQTALVGSIGVLFQYPNFTDLLKTVGVKVEEVKS 171

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
           SP+KA P+ F   +P+A   +  +V  SY WF  LV   R +   +   ++DGR++TG +
Sbjct: 172 SPLKAAPNGFEPTSPEARAALDALVKDSYAWFRGLVQTRRGMDNGQLEKVADGRVFTGRQ 231

Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLED--- 274
           A  + LID +G ++     L A         ++D+     +        + S   +    
Sbjct: 232 AVDLKLIDQLGDEKAAIAWLVAEKKITPDLPVRDFKLSPRFGDMTFLRTAASVTFDALGL 291

Query: 275 -----------TIPLMKQTKVQGLWAVWNP 293
                       +    +  + G+ A+W P
Sbjct: 292 SSIARQVEQTGIVRAADRLGLDGMLALWQP 321


>gi|254459026|ref|ZP_05072449.1| signal peptide peptidase SppA, 36K type [Campylobacterales
           bacterium GD 1]
 gi|207084297|gb|EDZ61586.1| signal peptide peptidase SppA, 36K type [Campylobacterales
           bacterium GD 1]
          Length = 289

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 131/266 (49%), Gaps = 5/266 (1%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66
            I+  +  +  V + V+ F+  S  +    ++ +I + G I +  E++E+IE+   +++ 
Sbjct: 17  FIQNHFKAMVFVLILVLIFAPESEQDLTQNNLQQINLVGPIIEVSEILEQIEKAGANNNV 76

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
             +++ + SPGG+      I  AI++++ +KPVI       AS  Y  S  +N I+A   
Sbjct: 77  KGVLLVVDSPGGAVAPSIEIAYAIKRLRTKKPVIAYAKGTIASGSYYASIWANEIIANPG 136

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           S+VGSIGV+ Q   +   +DK+G+S +SVK+   K   +P  +  P  +  +  V+  +Y
Sbjct: 137 SMVGSIGVIMQGADMSELMDKIGISTQSVKAGKYKQVGTPDRKWEPYEINELNKVIQGTY 196

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
             F + V+++R +   K    ++  I+T  +AK VGL+D +G        L  L      
Sbjct: 197 DMFTQDVAKARGLDIKKRDQFANAHIFTAQQAKDVGLVDSLGVSHNAKMKLILLSGVDD- 255

Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLL 272
                    ++ +   +K L+ S+ L
Sbjct: 256 ----PIWNKEDKFDKIMKKLTASTAL 277


>gi|323699943|ref|ZP_08111855.1| signal peptide peptidase SppA, 36K type [Desulfovibrio sp. ND132]
 gi|323459875|gb|EGB15740.1| signal peptide peptidase SppA, 36K type [Desulfovibrio
           desulfuricans ND132]
          Length = 300

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 120/262 (45%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63
           VL  I    ++  ++            +  +   +  + + G I DS  ++  I  +  D
Sbjct: 20  VLMIILAMALITGVMAFFRALGWTPGSLALSGDKIGIVHVEGMILDSSRVVRFIRSLEED 79

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
           DS   +++ + SPGGS    + I+ A++++   KPVI     +AAS GY  SC + +I A
Sbjct: 80  DSVKGVLLRVDSPGGSIAPSQEIYAAVKRLNQVKPVIASYGTVAASGGYYASCPARLIFA 139

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
              S+  SIGV+ ++  V   ++K G+  + + +   KA  +P   +     + M  ++ 
Sbjct: 140 NSGSITASIGVMAEFVTVADAMEKFGIRPEVLTTGKFKAAGTPLRNLTDAQREQMLGLMQ 199

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
             +  FV  V+E+R +   +   ++DGR  TG +A  +GLID +G Q +  + L      
Sbjct: 200 DLHDQFVDDVAEARGMERARIAAIADGRAVTGRQALALGLIDRLGTQADAVEELKKETGI 259

Query: 244 QSIRKIKDWNPPKNYWFCDLKN 265
           +    + +    +  +  +L  
Sbjct: 260 EGRAAVIEGPVEERTFVQELMG 281


>gi|221201332|ref|ZP_03574371.1| peptidase S49 [Burkholderia multivorans CGD2M]
 gi|221208812|ref|ZP_03581810.1| peptidase S49 [Burkholderia multivorans CGD2]
 gi|221171268|gb|EEE03717.1| peptidase S49 [Burkholderia multivorans CGD2]
 gi|221178600|gb|EEE11008.1| peptidase S49 [Burkholderia multivorans CGD2M]
          Length = 330

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/286 (23%), Positives = 121/286 (42%), Gaps = 17/286 (5%)

Query: 7   KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           KI  R+    +  L    ++ FS  +       H A + I G+I      +++++   ++
Sbjct: 44  KIFFRFAFLAVFLLFAFALIDFSSDAKFASGGRHTALVTIDGEIAAGTNANAEDINTALD 103

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLIS 115
               DD    +++ ++SPGGS      ++  I+++      KP+   V +M AS GY I+
Sbjct: 104 AAFEDDGTAGVVLRINSPGGSPVQAGMVYDEIRRLRGKYPDKPLYVVVTDMCASGGYYIA 163

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         + KLGV  +   S   K    PFS   PK  
Sbjct: 164 SAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFYDPFSPETPKMD 223

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q+++D  +  F++ V + R     +T  +  G  WTG ++ ++GL D  G  + V +
Sbjct: 224 AHAQELLDQVHAQFIKAVKDGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDSVAR 283

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
            +           + D+   ++      +    +        L   
Sbjct: 284 EVIK------APDLVDYTVKESLTNRVARKFGAAVGGAAMKALTAA 323


>gi|254501657|ref|ZP_05113808.1| peptidase, S49 (protease IV) family [Labrenzia alexandrii DFL-11]
 gi|222437728|gb|EEE44407.1| peptidase, S49 (protease IV) family [Labrenzia alexandrii DFL-11]
          Length = 328

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 98/298 (32%), Positives = 171/298 (57%), Gaps = 12/298 (4%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66
           ++ T  V   ++   +VYF+ ++++   S H+ARI I G I ++++ +E +E+I + D+ 
Sbjct: 22  RVATFLVAALVLIGGLVYFAGAANMSKRSAHIARIPIEGMILENRKTLEMLEKIGKSDAV 81

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
             +IVS++SPGGS   GEAI+ A++K+  +KP++ E+  +  SAGYLI+ +++ IVA   
Sbjct: 82  KGVIVSINSPGGSTTGGEAIYNALRKLSEKKPIVAEMRTIGTSAGYLIAMSADHIVARYN 141

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           ++ GSIGVLFQ+   +  L+ +GVS+++VKS+P+KAEP  +S   P+A  M+Q +V  SY
Sbjct: 142 TITGSIGVLFQFGNFEKLLETVGVSMEAVKSAPLKAEPDFYSPATPEAKAMLQAMVTDSY 201

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
           +WFV +++E R++   K L L+DGR+  G  A +  L+D +GG+E     L         
Sbjct: 202 NWFVDILAERRDLDKSKALELADGRVLLGQRALQEKLVDAIGGEETAVSWLETEKGVAKD 261

Query: 247 RKIKDWNPPK-----------NYWFCDLKNLSISSLLEDTIPLMKQ-TKVQGLWAVWN 292
             +  W   +           +        L++   L +   L+ +   + GL +VW 
Sbjct: 262 LPVITWTTTESIEELPFASRVSREIGKGFGLAVLEPLNEAKGLISRDLMLDGLVSVWQ 319


>gi|296136836|ref|YP_003644078.1| peptidase S49 [Thiomonas intermedia K12]
 gi|295796958|gb|ADG31748.1| peptidase S49 [Thiomonas intermedia K12]
          Length = 327

 Score =  151 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/277 (23%), Positives = 111/277 (40%), Gaps = 15/277 (5%)

Query: 8   IKTRYVMLSLVTLTVV--YFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60
           I  R+V+L +V L       +         PH A I + G+I       +  +   ++  
Sbjct: 46  IFFRFVLLGIVALIFFGGMIAEFGSSTATGPHTALIELNGEISIGSQASADNINAALQDA 105

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCAS 118
                   +I+ ++SPGGS      IF  I++++ +  KPV     E+ AS  Y ++ A+
Sbjct: 106 FSSPDTRGVILRINSPGGSPVQASQIFAEIERLRAKYNKPVYAVCEEVCASGAYYVAAAA 165

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           N I     SLVGSIGVL         +DKLGV+ + + +   K    PF+ +        
Sbjct: 166 NDIYVNPASLVGSIGVLMDGFGFSGLMDKLGVTRRLLTAGANKGFMDPFTPMPEDQKTYA 225

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
             +++  +  F+  V + R            G +WTG  A K GL D  G  +++ +   
Sbjct: 226 LGMLEQIHKQFIAAVEKGRGARLKVNDETFSGLVWTGESAVKQGLADGYGDVDQIARDKI 285

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
                    +I D+   +N      K    S  +   
Sbjct: 286 K------APEIVDYTVQENVAERLAKRFGASLGMGAV 316


>gi|73541958|ref|YP_296478.1| peptidase S49 [Ralstonia eutropha JMP134]
 gi|72119371|gb|AAZ61634.1| Peptidase S49 [Ralstonia eutropha JMP134]
          Length = 394

 Score =  151 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 119/289 (41%), Gaps = 14/289 (4%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIERIS 61
             +   + + LV    V+         +  H A +++ G+I       ++ +   ++   
Sbjct: 111 FFRFAVLGILLVVFFAVFDFKGDSGIGSGRHTAMVSLDGEIAAGTPASAESINASLQAAF 170

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCAS 118
            D +A  +I+ ++SPGGS      I   I ++      KP    V E+ AS GY ++ A+
Sbjct: 171 ADSNAAGVILKINSPGGSPVQAGIINDEIHRLRTLYPSKPFYVVVEEICASGGYYVAAAA 230

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I   + S+VGSIGVL         +DKLGV  +   S   K    PFS   P+     
Sbjct: 231 DKIYVDKASIVGSIGVLMDGFGFTGLMDKLGVERRLYTSGANKGMLDPFSPQVPRQKAYA 290

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           + ++   +  F+ +V E R         L  G  W+G  + ++GL D +G  + V + L+
Sbjct: 291 ETMLKEIHQQFIDVVKEGRGDRLKSDPELFSGLFWSGERSVELGLADGLGSADYVARDLF 350

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
                     I D+   +N      K    +        ++  T +QG+
Sbjct: 351 K------AEDIVDYTVKENIAERVAKRFGAAVGTAAMKTMLWSTGMQGM 393


>gi|52548335|gb|AAU82184.1| periplasmic serine protease [uncultured archaeon GZfos11A10]
          Length = 381

 Score =  151 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 128/266 (48%), Gaps = 14/266 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVE---DNSPHVARIAIRGQI-----------ED 49
               I    +M++++ +++      S +         +A + ++G +             
Sbjct: 87  FFSYIILVLLMITIIGVSLALILGGSDLPGLYSTGDQIAVVYVQGVMITGGLPDGFGFAT 146

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           S+ + + I   + D S  A+++ ++SPGGS  A + I   I+K K+ KPV+  + ++AAS
Sbjct: 147 SESICKNIRLAADDTSVKAIVLRVNSPGGSPAAAQEIAHEIKKAKSEKPVVVSMGDVAAS 206

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A Y IS  ++ I+A   ++ GSIGV++ +     + D+ G+     KS   K     +  
Sbjct: 207 AAYYISAPTDRIIANPDTITGSIGVIWIFENKSGYYDEEGIEHWVAKSGEFKDMGGDWRN 266

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
           +  K     ++VV  ++  FV  V+  RN+  ++ L LSDGR++TGA+A  +GL+D  G 
Sbjct: 267 LTEKEKIYAEEVVMDAFSRFVDEVAVGRNMSREQVLNLSDGRVYTGADAIDLGLVDETGN 326

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPP 255
             +       LG      +IK  N P
Sbjct: 327 IYDAIDIAAELGNCTGEPEIKYMNKP 352


>gi|261856346|ref|YP_003263629.1| signal peptide peptidase SppA, 36K type [Halothiobacillus
           neapolitanus c2]
 gi|261836815|gb|ACX96582.1| signal peptide peptidase SppA, 36K type [Halothiobacillus
           neapolitanus c2]
          Length = 350

 Score =  151 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 82/292 (28%), Positives = 137/292 (46%), Gaps = 22/292 (7%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDN------SPHVARIAIRGQI-----EDSQELIE 55
           ++  R + L+LV   + + S S  ++D+       P    I I G I       ++E+I 
Sbjct: 61  RVFFRLISLALVIWIIAWISLSGDLDDDHGVVIKQPSAGIIDISGVIAAGQEASAEEIIP 120

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGY 112
            +E+  ++     +++ +++PGGS      IF AI +++     KPV   V ++ AS GY
Sbjct: 121 VLEKAFKNTQIKGIVLRMNTPGGSPVQSGEIFDAIMRLRKEYPAKPVYAVVEDVCASGGY 180

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            I+ A++ I A + SLVGSIGV          + KLG+  + + S   KA   PFS  NP
Sbjct: 181 YIAAAADKIFANQASLVGSIGVRMDSFGFVDAMQKLGIESRLITSGANKAMLDPFSPENP 240

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
             VQ MQ+++D  +  F+  V + R         L  G I+TGA+A+K GLID +G    
Sbjct: 241 AQVQYMQNLLDQVHQQFIDAVKKGRGKRLANDPDLFSGLIYTGAQAQKNGLIDGLGTVRS 300

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
           V +    L  +       D  P K+ +   L     S+ +  ++  +    +
Sbjct: 301 VVRDELHLKNE------VDLTPSKSPFEELLGK--TSTQISQSLTSLWAANL 344


>gi|332708205|ref|ZP_08428195.1| serine peptidase, MEROPS family S49 [Lyngbya majuscula 3L]
 gi|332353031|gb|EGJ32581.1| serine peptidase, MEROPS family S49 [Lyngbya majuscula 3L]
          Length = 605

 Score =  151 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 122/251 (48%), Gaps = 9/251 (3%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSP 76
           S  S    +   +A I   G I D          +   +++  +  D    A+++ ++SP
Sbjct: 307 SPYSKNRKSKHKIAIIYAEGSIVDGQGNFEQVGGERFAKQLRELRLDKDIKAVVLRVNSP 366

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GGSA A E I R ++ ++  KPVI  +  +AAS GY IS  S+ I A   ++ GSIGV  
Sbjct: 367 GGSATASEIIQREVRLIREEKPVIVSMGNVAASGGYWISTYSDRIFAEPNTITGSIGVFG 426

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
               ++   +  G++   V++  +    S       + + + Q +V+  Y  F+  V+ES
Sbjct: 427 VLFNIQELANNNGLTWDIVQTGSLADIQSTVRPKTDQELAIYQTMVNQIYDQFIDKVAES 486

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R +P  K   ++ GR+W+G +AK++GL+D +GG  +  +        +   K++++    
Sbjct: 487 RKLPKGKVKDIAQGRVWSGIDAKQIGLVDEIGGINDAIKHAAKQAKLKDDWKVEEYPKIP 546

Query: 257 NYWFCDLKNLS 267
           ++    LK LS
Sbjct: 547 SFEEMILKTLS 557



 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 106/243 (43%), Gaps = 11/243 (4%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQ---IEDSQELIERIERISRDDSATALIVS 72
            LV    V  S ++     S  +  + + GQ   I   +++++ +++ ++D    AL + 
Sbjct: 51  VLVFDLSVNISDTNPTSSTSEVIEEV-LSGQQTNIIPLRKVLDTLDKATKDKRIVALYLD 109

Query: 73  LSSP----GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
            S+            + +  A+++ +     I           Y +S  ++ I+     +
Sbjct: 110 GSASKTVGNTGLANLKEVREALERFRAAGKKIIAYDVDLGEREYYLSSVADTIILNPMGV 169

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSY 186
           V   G+     ++   L K G+ ++ V+    K+   PF   +++P++ +  ++++D  +
Sbjct: 170 VEINGLNSAQLFLTGALQKYGIGVQVVRVGKYKSAVEPFLLKQLSPESREQTRELLDDLW 229

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
             F+  V +SR I       +++ + +   +EAK  GL+D VG  +EV  +L  L  ++ 
Sbjct: 230 DEFLTTVGKSREITPKTLQAIANTKGMLIASEAKTQGLVDQVGYFDEVIATLKELTGEKK 289

Query: 246 IRK 248
             K
Sbjct: 290 KDK 292


>gi|194290172|ref|YP_002006079.1| signal peptide peptidase, s49 family [Cupriavidus taiwanensis LMG
           19424]
 gi|193224007|emb|CAQ70016.1| Putative signal peptide peptidase, S49 family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 398

 Score =  151 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 122/292 (41%), Gaps = 17/292 (5%)

Query: 7   KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           +I  R V   +L L+   V  F     +  +  H A + + G+I       ++ +   ++
Sbjct: 112 RIFFRLVTLGLLVLILFAVFDFKGDGTITASGRHTAMVTLEGEIAAGTPASAEAINASLQ 171

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLIS 115
               D +A  +I+ ++SPGGS      I   I ++      KP+   V E+ AS GY ++
Sbjct: 172 AAFADSNAAGVILKINSPGGSPVQAGIINDEIHRLRGLYPSKPLYVVVEEICASGGYYVA 231

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         +DKLGV  +   S   K    PFS   PK  
Sbjct: 232 AAADKIYVDKASIVGSIGVLMDGFGFTGLMDKLGVERRLYTSGANKGMLDPFSPQVPKQK 291

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              + ++   +  F+ +V E R         L  G  W+G  +  +GL D +G  E V +
Sbjct: 292 AFAEAMLKQIHQQFIDVVKEGRGDRLKDDPELFSGLFWSGERSVALGLADGLGSAEYVAR 351

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
            L+          I D+   +N      K    +        ++  T +QG+
Sbjct: 352 DLFK------AEDIVDYTVKENIAERVAKRFGAAVGTAAMKTMLWSTGMQGM 397


>gi|296447328|ref|ZP_06889256.1| signal peptide peptidase SppA, 36K type [Methylosinus trichosporium
           OB3b]
 gi|296255193|gb|EFH02292.1| signal peptide peptidase SppA, 36K type [Methylosinus trichosporium
           OB3b]
          Length = 325

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 83/275 (30%), Positives = 147/275 (53%), Gaps = 11/275 (4%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
                 SPH+AR+++ G I   +E ++ ++ I  D  A+A+++++ SPGG+    E +  
Sbjct: 46  GPAAKLSPHIARLSVSGIITGDKETLDLVKSIGEDAKASAVLLAIDSPGGTTTGAERLHD 105

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
            ++++  +KPV+  V  +AAS GY+ + A++ IVA   SLVGSIGVLFQ+P V   LD +
Sbjct: 106 ELRRLAAKKPVVAVVGTLAASGGYIAAIAADEIVAHGNSLVGSIGVLFQFPNVGKLLDNV 165

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           GV +++VKSSP+KA P+ F   + +A   +  +V  SY WF  LV E R +   +   ++
Sbjct: 166 GVQMETVKSSPLKAAPNGFEPTSEEARAAIAALVADSYDWFKGLVKERRKLDDSELAKVT 225

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL-- 266
           DGR++T  +   + L+D++GG+ E  + L           + DW          L +   
Sbjct: 226 DGRVFTARQGLPLKLVDLIGGEREAIEWLETEKGVAKRLPVVDWKKKNAIERFGLVDSAA 285

Query: 267 ---------SISSLLEDTIPLMKQTKVQGLWAVWN 292
                    +++  L+    + ++  + G+ A+W 
Sbjct: 286 GVAAALGLDALAQALQRVGTVAERGLLDGVVAIWQ 320


>gi|289624530|ref|ZP_06457484.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649341|ref|ZP_06480684.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330869275|gb|EGH03984.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 332

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 18/291 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61
             K        V + V    +       S H A I ++G I D     ++ ++  +++  
Sbjct: 49  FFKLLTFAFLFVAVVVPMLDFEGGTSRRSSHTALIDVQGVIADKESASAENIVTALQKAF 108

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118
            D+    +I+ ++SPGGS      ++  I++++  KP I     +    AS  Y I+ A+
Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAAKPDIKVYAVITDLGASGAYYIASAA 168

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I A + SLVGSIGV          +DKLGV  ++  S   KA   PF        Q  
Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLYPFQPQKADETQFW 228

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Q V+D+++  F+  V + R           L  G IWTG +A  +GL+D +G    V + 
Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKDHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +         + I ++   ++ +    K L  S  + + I ++       L
Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFSGPSL 331


>gi|152985915|ref|YP_001347560.1| putative peptidase [Pseudomonas aeruginosa PA7]
 gi|150961073|gb|ABR83098.1| probable peptidase [Pseudomonas aeruginosa PA7]
          Length = 326

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 127/294 (43%), Gaps = 19/294 (6%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-----ELIERIE 58
             K +   Y+ + L+  +  + S          H A I ++G I D +      ++  + 
Sbjct: 41  FFKSLTFLYLFVVLLAFS-PFASLEKSASRGGSHTALIEVKGMIADDEPASADNIVTALR 99

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV---HEMAASAGYLIS 115
               D+    +++ ++SPGGS      I+  I++++   P +       ++ AS  Y I+
Sbjct: 100 AAFEDEGTKGIVLRINSPGGSPVQSGYIYDEIRRLRGEHPNVKVYAVISDLGASGAYYIA 159

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I A + SLVGSIGV          L+KLGV  +   S   K+   PF    P+  
Sbjct: 160 SAADQIYADKASLVGSIGVTAASFGFVGTLEKLGVERRVYTSGEHKSFLDPFQPQKPEET 219

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKT--LVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
           Q  Q V+D+++  F+  V + R           L  G +W+G +A ++GLID +G    V
Sbjct: 220 QFWQQVLDTTHKQFIDSVKKGRGDRLKVDGHPELFSGLVWSGEQALQLGLIDGLGNASYV 279

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
            + +         +KI+D+   ++ +    K    S  + + + L    +   L
Sbjct: 280 AREVVK------EKKIEDYTVQESPFDRFAKKFGAS--VAERLALWMGWQGPVL 325


>gi|303245615|ref|ZP_07331898.1| signal peptide peptidase SppA, 36K type [Desulfovibrio
           fructosovorans JJ]
 gi|302492878|gb|EFL52743.1| signal peptide peptidase SppA, 36K type [Desulfovibrio
           fructosovorans JJ]
          Length = 311

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 128/285 (44%), Gaps = 4/285 (1%)

Query: 10  TRYVMLSLVTLTVVYFSWSSHVED----NSPHVARIAIRGQIEDSQELIERIERISRDDS 65
              +++  +      F              P +  + I G I  +++++  I ++  D S
Sbjct: 23  AAVILVLGIAAACGVFGHDEEGGSLLGAAEPRIGVVRIEGPIVAAEDVVAFIRKLREDKS 82

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
              +++ ++SPGG+    + ++ A++K++  KPV+     +AAS GY  +C +  I A  
Sbjct: 83  VKGVVLRVNSPGGAFGPSQEMYMAVKKLRAVKPVVASFSAVAASGGYYAACPAGRIFANP 142

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
            ++ GSIGV+ Q+  V+  L KLG+  +S+ +  +K   SPF  +       ++ ++D  
Sbjct: 143 GTITGSIGVMTQFANVRDLLQKLGIDFESLTTGKLKDAGSPFKPLTDDQRAYLKGLIDDL 202

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
              F   V++ R +  D    ++DGR  TGA A ++GL+D +GGQEE    L        
Sbjct: 203 NKQFSGDVAKQRKLAKDAIAAIADGRAMTGARALELGLVDELGGQEEAVDYLKKETGLTG 262

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
              +      K      L +      L     +   +++  + ++
Sbjct: 263 DVPLLKGPKKKTSLLEKLSSSLSLPDLRGMALVTVLSELANVQSL 307


>gi|146282967|ref|YP_001173120.1| putative peptidase [Pseudomonas stutzeri A1501]
 gi|145571172|gb|ABP80278.1| putative peptidase [Pseudomonas stutzeri A1501]
 gi|327481318|gb|AEA84628.1| putative peptidase [Pseudomonas stutzeri DSM 4166]
          Length = 327

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 127/298 (42%), Gaps = 24/298 (8%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP------HVARIAIRGQIED-----SQELI 54
           ++    + +L+ + L      +S  ++          H A I +RG I D     +  ++
Sbjct: 37  RRWGIFFKLLTFIYLFGALALFSPALQLGKGKAARESHTAVINVRGMIADEESASADNIV 96

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAG 111
             +     D +   +I+ ++SPGGS      I+  I++++   P I     +    AS  
Sbjct: 97  GALRAAFEDANTKGVILRINSPGGSPVQSGYIYDEIRRLRGEYPAIKVYAVITDLGASGA 156

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I A ++SLVGSIGV          ++KLGV  +   +   KA   PF    
Sbjct: 157 YYIASAADEIYADKSSLVGSIGVTAATFGFVDTMEKLGVERRVYTAGEHKAFLDPFQPEK 216

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--LVLSDGRIWTGAEAKKVGLIDVVGG 229
           P+  +  + V+ +++  F+  V   R           L  G IW+G +A ++GL+D +G 
Sbjct: 217 PEETRFWRSVLATTHQQFIDSVKRGRGERLQDAQHPELFSGLIWSGEQALELGLVDGLGS 276

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
              V + +          +I D+   ++ +    K L  S  + + + ++   +   L
Sbjct: 277 TAYVAREVVG------EPEIVDFTVKESPFDRFTKKLGTS--VAERLAILAGLQGPAL 326


>gi|254470780|ref|ZP_05084183.1| protease IV [Pseudovibrio sp. JE062]
 gi|211959922|gb|EEA95119.1| protease IV [Pseudovibrio sp. JE062]
          Length = 302

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 101/276 (36%), Positives = 160/276 (57%), Gaps = 12/276 (4%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
             +  +  H+ARI I G I   +  +E +E I++DD+   +IVS++SPGG+   GEA++ 
Sbjct: 11  GELARSEKHIARIEISGPITYDRRQLEMLEAIAKDDTVQGVIVSINSPGGTTSGGEALYN 70

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
           A++K+  +KPV   +  + ASA YL + AS+ +VA  TSL GSIGVLFQY   K  LDK+
Sbjct: 71  ALRKIAEKKPVTASITTLGASAAYLSAIASDHLVAQYTSLTGSIGVLFQYGNAKGLLDKI 130

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           GV + ++KS+P+KAEP+ +    P+  + +QD++D +Y WFV LV+E R +  ++ L L+
Sbjct: 131 GVEMDAIKSAPLKAEPNFYEPATPEVKEALQDIIDDTYMWFVGLVAERRGLSQERALQLA 190

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN----------- 257
           +G+++TG +AK + LID +GG++   Q L       S  KI DW P  +           
Sbjct: 191 NGQVYTGHQAKGLELIDEIGGEQAAHQWLIEKKGLSSDLKIIDWKPESDERTLPFPANLL 250

Query: 258 YWFCDLKNLSISSLLEDTIPLMK-QTKVQGLWAVWN 292
            +        I SLL+    ++     + GL +VW 
Sbjct: 251 GFLGSENQNLIHSLLKTAKSVVDSSLPLDGLVSVWQ 286


>gi|330975218|gb|EGH75284.1| peptidase S49, SppA [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 332

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 18/291 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61
             K        V + V    +       S H A I ++G I D     ++ ++  +++  
Sbjct: 49  FFKLLTFAFLFVAVIVPMLDFEGGTSRRSSHTALIDVQGVIADKEAASAENIVNALQKAF 108

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118
            D+    +I+ ++SPGGS      ++  I++++  KP I     +    AS  Y I+ A+
Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRATKPDIKVYAVITDLGASGAYYIASAA 168

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I A + SLVGSIGV          +DKLGV  ++  S   KA   PF        Q  
Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Q V+D+++  F+  V + R           L  G IWTG +A  +GL+D +G    V + 
Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKEHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +         + I ++   ++ +    K L  S  + + I ++       L
Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 331


>gi|91205551|ref|YP_537906.1| Signal peptide peptidase SppA, 36K type [Rickettsia bellii
           RML369-C]
 gi|157827267|ref|YP_001496331.1| Signal peptide peptidase SppA, 36K type [Rickettsia bellii OSU
           85-389]
 gi|91069095|gb|ABE04817.1| Signal peptide peptidase SppA, 36K type [Rickettsia bellii
           RML369-C]
 gi|157802571|gb|ABV79294.1| Signal peptide peptidase SppA, 36K type [Rickettsia bellii OSU
           85-389]
          Length = 307

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 153/296 (51%), Gaps = 14/296 (4%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSH----------VEDNSPHVARIAIRGQIEDSQELI 54
            K+IK R ++  L+ + ++  S+               +N  ++A + I   I + ++  
Sbjct: 11  RKQIKARLLVWKLIAIILIGVSFFLICKDFVPTEVLANNNDDYIASVLIDDIILEDEKRD 70

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114
           +++++I  D    ALIV+++SPGG+    E I+  + K+  +KPV+  +  MAAS GYLI
Sbjct: 71  KKLKKIVDDSHIKALIVNVNSPGGTVVGSEKIYNILLKISEKKPVVIVMGTMAASGGYLI 130

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           S A + I++   ++ GSIGV+ Q   V     KLG++  + KS  +KA P+P  ++    
Sbjct: 131 SLAGDYIISHNGTITGSIGVILQTAEVTDLAQKLGITFLNFKSGELKAAPNPTEKLTENV 190

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
              + + ++ +Y++F+ LV+E R IP D+   L+DGRI++G +A K+ L+D +G ++   
Sbjct: 191 RVAVMENIEDTYNFFIELVAERRKIPIDEVKKLADGRIYSGRQAVKLKLVDNIGNEDTAL 250

Query: 235 QSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
           + L       +   IKD+         ++      SL+    P   +    G+ A+
Sbjct: 251 KWLQDEKKIDAKLTIKDYQLKPKPKLVEMMLEDFDSLV----PSFFKNSFNGIKAI 302


>gi|298486214|ref|ZP_07004277.1| Probable peptidase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298159221|gb|EFI00279.1| Probable peptidase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 332

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 18/291 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61
             K        V + V    +       S H A I ++G I D     ++ ++  +++  
Sbjct: 49  FFKLLTFAFLFVAVVVPMLDFEGGTSRRSSHTALIDVQGVIADKESASAENIVTALQKAF 108

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118
            D+    +I+ ++SPGGS      ++  I++++  KP I     +    AS  Y I+ A+
Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAAKPDIKVYAVITDLGASGAYYIASAA 168

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I A + SLVGSIGV          +DKLGV  ++  S   KA   PF        Q  
Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Q V+D+++  F+  V + R           L  G IWTG +A  +GL+D +G    V + 
Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKDHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +         + I ++   ++ +    K L  S  + + I ++       L
Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 331


>gi|330973864|gb|EGH73930.1| peptidase S49, SppA [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 332

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 18/291 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61
             K        V + V    +       S H A I ++G I D     ++ ++  +++  
Sbjct: 49  FFKLLTFAFLFVAVIVPMLDFEGGTSRRSSHTALIDVQGVIADKEAASAENIVTALQKAF 108

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118
            D+    +I+ ++SPGGS      ++  I++++  KP I     +    AS  Y I+ A+
Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRATKPDIKVYAVITDLGASGAYYIASAA 168

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I A + SLVGSIGV          +DKLGV  ++  S   KA   PF        Q  
Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Q V+D+++  F+  V + R           L  G IWTG +A  +GL+D +G    V + 
Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKDHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +         + I ++   ++ +    K L  S  + + I ++       L
Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 331


>gi|91784726|ref|YP_559932.1| family S49 unassigned peptidase [Burkholderia xenovorans LB400]
 gi|91688680|gb|ABE31880.1| Family S49 unassigned peptidase [Burkholderia xenovorans LB400]
          Length = 334

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 122/289 (42%), Gaps = 16/289 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIER 59
           +I  R+V L ++ L +          V     H A + + G+I      +++++   +E 
Sbjct: 50  RIFFRFVFLVILLLAIWAAIDFSGDKVAATGRHTAMVTLDGEISADTNANAEDINTALES 109

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV---ITEVHEMAASAGYLISC 116
              D     +I+  +SPGGS      I+  I++++ + P       V +M AS GY  + 
Sbjct: 110 AFDDAGTAGVILRCNSPGGSPVQAGIIYDEIRRLRAKYPSVPLYAVVGDMCASGGYYAAA 169

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
           A++ I   + S+VGSIGVL         +DKLG+  +   S   K    PFS   PK  +
Sbjct: 170 AADKIYVDKASIVGSIGVLMDSFGFTGLMDKLGIQRRLHTSGENKGFFDPFSPETPKMDE 229

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
             QD++D  +  F+  V + R     +T  +  G  WTG ++ ++GL D  G  + V + 
Sbjct: 230 HAQDMLDQIHAQFIDAVRQGRGKRLHETPDMFSGLFWTGQKSVELGLADGFGDTDYVARD 289

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           L+          I D+   ++      +    +        +    K+ 
Sbjct: 290 LFK------APDIVDYTVKESITDRVARKFGAAVGSGAVHAMALGGKLN 332


>gi|150024502|ref|YP_001295328.1| protease IV (signal peptide peptidase) [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771043|emb|CAL42510.1| Protease IV (signal peptide peptidase) [Flavobacterium
           psychrophilum JIP02/86]
          Length = 587

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/253 (24%), Positives = 123/253 (48%), Gaps = 10/253 (3%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSS 75
            + S+   +    +A I  +G+I   +          +   ++   +DD+  A+++ ++S
Sbjct: 291 IATSTSDSNTKDKIAVIYAQGEIGSGEGDINTVGEGSMRRSLQEARKDDNIKAIVLRVNS 350

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           PGGSA   + I+R I+  K  KPVI  +  +AAS GY I+C +N I A  +++ GSIGV 
Sbjct: 351 PGGSALTSDLIWREIEITKKVKPVIVSMGNLAASGGYYIACNANKIFAEASTITGSIGVF 410

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
              P +     K G++ + V++    +  S F  +     Q+ Q+ V+  Y+ FV  V++
Sbjct: 411 GTLPNLSAVTKKYGINTELVETHENASGYSLFKPLEDNFRQITQEGVEHIYNVFVTRVAK 470

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
            R + + +   ++ GR+W G++A ++GL+D +GG ++       L   +      D+   
Sbjct: 471 GRKMTFAQVDAIAQGRVWAGSDALRLGLVDKIGGLDDALAYASNLVKLKE-YSTVDYPKY 529

Query: 256 KNYWFCDLKNLSI 268
           +  +        +
Sbjct: 530 EKDFKELFSGSGL 542



 Score = 97.0 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 101/276 (36%), Gaps = 25/276 (9%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQ------------IEDSQ--- 51
            +        ++ +  ++   S+        V  + +               I   +   
Sbjct: 15  FVFCMLFFFGILFIAAIFGGGSATTFVEDNSVLELNLEEVTNDYGGKFNFAEIGYYEAKH 74

Query: 52  ----ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
               ++++ I+    DD    + +  ++        +A+   ++  K     I     + 
Sbjct: 75  DGLTDILKAIDAAKTDDKIKGISILNNTLALGVAQTKALRDELEIFKKSGKFIMAYGNVY 134

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           +   Y ++  +N +       +   G+  +  Y K F DK G+ ++ ++    K+   PF
Sbjct: 135 SQKDYYLNSVANTVYLNPVGELDFKGLSTEVMYYKDFQDKTGLKMEVIRHGKYKSAVEPF 194

Query: 168 --SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGAEAKKVGLI 224
             +E++P+    +   + S ++  V  +S+SR I   +   ++ G +  T   A K  LI
Sbjct: 195 LLNEMSPENRDQITTFLTSIWNSMVNDISKSRKISIAQLNTIATGLLARTPELALKNKLI 254

Query: 225 DVVGGQE---EVWQSLYALGVDQSIRKIKDWNPPKN 257
           D +  ++   +  +    +  ++  + +   +  ++
Sbjct: 255 DKIAYEDVYHDDIRKALKVAANEDYKTVNIIDYAQD 290


>gi|289671962|ref|ZP_06492852.1| peptidase S49, SppA [Pseudomonas syringae pv. syringae FF5]
          Length = 332

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 18/291 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61
             K        V + V    +       S H A I ++G I D     ++ ++  +++  
Sbjct: 49  FFKLLTFAFLFVAVIVPMLDFEGGTSRRSSHTALIDVQGVIADKEAASAENIVTALQKAF 108

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118
            D+    +I+ ++SPGGS      ++  I++++  KP I     +    AS  Y I+ A+
Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRATKPDIKVYAVITDLGASGAYYIASAA 168

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I A + SLVGSIGV          +DKLGV  ++  S   KA   PF        Q  
Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Q V+D+++  F+  V + R           L  G IWTG +A  +GL+D +G    V + 
Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKEHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +         + I ++   ++ +    K L  S  + + I ++       L
Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 331


>gi|330985586|gb|EGH83689.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 332

 Score =  150 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 124/291 (42%), Gaps = 18/291 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61
             K        V + V    +       S H A I ++G I D     ++ ++  +++  
Sbjct: 49  FFKLLTFAFLFVAVVVPMLDFEGGTSRRSSHTALIDVQGVIADKESASAENIVTALQKAF 108

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118
            D+    +I+ ++SPGGS      ++  I++++  KP I     +    AS  Y I+ A+
Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAAKPDIKVYAVITDLGASGAYYIASAA 168

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I A + SLVGSIGV          +DKLGV  ++  S   KA   PF     +  Q  
Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKAEETQFW 228

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Q V+D+++  F+  V + R           L  G IWTG +A  +GL+D +G    V + 
Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKDHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +         + I ++   ++ +    K L  S  + + I ++       L
Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 331


>gi|126663145|ref|ZP_01734143.1| putative protease IV [Flavobacteria bacterium BAL38]
 gi|126624803|gb|EAZ95493.1| putative protease IV [Flavobacteria bacterium BAL38]
          Length = 588

 Score =  150 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 68/286 (23%), Positives = 138/286 (48%), Gaps = 13/286 (4%)

Query: 17  LVTLTVVYFSWSSHVE--DNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDS 65
           +V++T      +S VE       +A I  +G+I   +          +   ++    DD 
Sbjct: 281 IVSITDYAQKAASTVEDYSKEDIIAVIYAQGEIAGGEGDVNIIGEGSINRSLKEAREDDD 340

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
             A+++ ++SPGGSA   E I+R I+  K  KPV+  +   AAS GY I+  ++ I A  
Sbjct: 341 VKAIVLRVNSPGGSALTSELIWREIEITKKVKPVVVSMGNYAASGGYYIAANADRIFAEP 400

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
            ++ GSIGV    P +      +G++ + VK+    +  S F  ++      + + ++  
Sbjct: 401 NTITGSIGVFGMLPNMSQLSKNIGINAEQVKTHENASGYSIFEPIDENFKGFVLESIEKI 460

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  F++ V++ R +  ++  +++ GR+WTG +A K+GL+D +GG +   +    LG   +
Sbjct: 461 YATFLKRVADGRKMTTEQVDLIAQGRVWTGIDAHKLGLVDEIGGLDAAIKYAAKLGK-TN 519

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM-KQTKVQGLWAV 290
             + +++   +  +   L N +  ++ +    L+ +Q   +G   +
Sbjct: 520 SYRTENFPEYEKSFEDMLANFTGMAMFKTKEQLLKEQLGEEGFQML 565



 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 80/203 (39%), Gaps = 3/203 (1%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
              +++  IE    D+    + +  +         +A+   + + K     +       +
Sbjct: 76  GVTDILNAIEAAKNDNKIKGISILNNQSQLGLAQSKAVRDKLDEFKKSGKFVYSYSNGYS 135

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167
              Y ++  ++ +       +   G+  +  Y+K   +K GV ++ ++    K+   P+ 
Sbjct: 136 QGEYYLNSVADQVYLNPMGEIDFKGLSAEILYMKELQEKAGVKMEVIRHGKFKSAVEPYL 195

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLID 225
             E++P+  + M  +++S ++  V  +S+SR +   +   +++     T   A    LID
Sbjct: 196 AQEMSPENREQMTVLLNSVWNTIVTDISKSRKLSIAQLDAIANSLGARTPELALANKLID 255

Query: 226 VVGGQEEVWQSLYALGVDQSIRK 248
            +  ++E   ++ A        K
Sbjct: 256 KIAYEDEYHDAIRAKLKLDKKEK 278


>gi|225010434|ref|ZP_03700905.1| signal peptide peptidase SppA, 67K type [Flavobacteria bacterium
           MS024-3C]
 gi|225005263|gb|EEG43214.1| signal peptide peptidase SppA, 67K type [Flavobacteria bacterium
           MS024-3C]
          Length = 586

 Score =  150 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 10/270 (3%)

Query: 26  SWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSP 76
           S +     +  ++A +  +G+I            +  IE IE    + S  A+++ ++SP
Sbjct: 291 SATKRPYSSKENIAVVYAQGEILYGQGNADYIGQELTIEGIEAAVENSSVKAIVLRVNSP 350

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GGSA   + I+ AI+K K  KPV+  + ++AAS GY I+  +N I A+  ++ GSIGV  
Sbjct: 351 GGSALVSDLIWHAIEKAKAVKPVVVSMGDVAASGGYYIAAGANKIFASPATITGSIGVFG 410

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
             P +     + GV+ + V +    A  S F  ++ K   +    ++ +Y  F+  VS  
Sbjct: 411 VLPNMSQLAKEWGVNAQEVATHDNGATYSVFRPMSEKFKALTVQSIEDTYQTFLSRVSSG 470

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R +  D+   L+ GR+WT   A   GLID +G  +        LG       I+++   K
Sbjct: 471 RGMTVDQVDALAQGRVWTAEAALAGGLIDGIGDLDVAIAEAALLGGASD-YGIRNYPKYK 529

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           + +   +++LS  S    ++  + Q  +  
Sbjct: 530 SPFEQLIEDLSGVSTSIKSLASLSQNHLDA 559



 Score = 78.9 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/258 (12%), Positives = 85/258 (32%), Gaps = 25/258 (9%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-------------------E 48
           +          ++              +  V  +  +G +                    
Sbjct: 16  VAFGVAFFMFFSIITALSDMEPQTVIGNKVVLELDFQGSVKDRVVDQSQDPFGAFGNPQM 75

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
              +++  IE    D     + +  +         +AI  A+   K     +    E   
Sbjct: 76  GLDQILLAIEVAKEDSRVQGISIRNAYFMAGWSQVKAIRDALSDFKTSGKKVFSYAEFYD 135

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167
              Y ++  ++ I    T +V   G+  +  ++K F DK G+ ++ ++    K+  +P+ 
Sbjct: 136 QKDYYLASVADSIFLTPTGIVDLKGLSSEVLFLKDFQDKSGLKMEVIRHGKYKSAVAPYL 195

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLID 225
            +E+       +  ++D  +    + +++ R++   +           T  +A + G ID
Sbjct: 196 DNEMGVAQKTQLTALLDGLWQVMAQDMAQDRSMTLAQLNGFVTAMGAGTPLKALENGFID 255

Query: 226 VVGGQEE---VWQSLYAL 240
            +  ++E     +  + L
Sbjct: 256 GLLYEDEYDLALKKAFDL 273


>gi|91974675|ref|YP_567334.1| signal peptide peptidase SppA, 36K type [Rhodopseudomonas palustris
           BisB5]
 gi|91681131|gb|ABE37433.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49
           [Rhodopseudomonas palustris BisB5]
          Length = 326

 Score =  150 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 89/275 (32%), Positives = 155/275 (56%), Gaps = 15/275 (5%)

Query: 33  DNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
             S  +ARI I G I  + E +E +ER+ +  SA A+IV ++SPGG+    E ++ A+ +
Sbjct: 49  ATSSSIARIKIDGLIRSNSERVEALERLEKSQSA-AVIVHINSPGGTTAGSEELYNALMR 107

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           +K +KP++  V  +AAS GY+ + AS+ I+A ++SLVGSIGVLFQYP V   +  +GV +
Sbjct: 108 LKAKKPMVVVVEGLAASGGYIAALASDHIIAQQSSLVGSIGVLFQYPNVSELMKTVGVKV 167

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
           + VKSSP+KA P+ F   +P+A   ++ +V  SY WF  +V + R++  ++  V++DGR+
Sbjct: 168 EEVKSSPLKAAPNGFEPTSPEARAALESLVRDSYAWFRDMVKQRRSMDDNQLGVVADGRV 227

Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
           +TG +A  + LID +G ++     L      +S   ++D+     +       ++ S  L
Sbjct: 228 FTGRQALGLKLIDELGDEKTAVAWLETEKKIKSGLPVRDFKLSPQFGDLAFLRVAASVTL 287

Query: 273 ED--------------TIPLMKQTKVQGLWAVWNP 293
           +                +  +++  + G+ A+W P
Sbjct: 288 DALGLGAIARQIEQSGAVQSVERLGLDGMLALWAP 322


>gi|257487556|ref|ZP_05641597.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331012625|gb|EGH92681.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 332

 Score =  150 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 18/291 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61
             K        V + V    +       S H A I ++G I D     ++ ++  +++  
Sbjct: 49  FFKLLTFAFLFVAVVVPMLDFEGGTSRRSSHTALIDVQGVIADKESASAENIVTALQKAF 108

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118
            D+    +I+ ++SPGGS      ++  I++++  KP I     +    AS  Y I+ A+
Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAAKPDIKVYAVITDLGASGAYYIASAA 168

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I A + SLVGSIGV          +DKLGV  ++  S   KA   PF        Q  
Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Q V+D+++  F+  V + R           L  G IWTG +A  +GL+D +G    V + 
Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKDHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +         + I ++   ++ +    K L  S  + + I ++       L
Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 331


>gi|330952680|gb|EGH52940.1| peptidase S49, SppA [Pseudomonas syringae Cit 7]
          Length = 332

 Score =  150 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 18/291 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61
             K        V + V    +       S H A I ++G I D     ++ ++  +++  
Sbjct: 49  FFKLLTFAFLFVAVIVPMLDFEGGTSRRSSHTALIDVQGVIADKEAASAENIVTALQKAF 108

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118
            D+    +I+ ++SPGGS      ++  I++++  KP I     +    AS  Y I+ A+
Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAAKPDIKVYAVITDLGASGAYYIASAA 168

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I A + SLVGSIGV          +DKLGV  ++  S   KA   PF        Q  
Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Q V+D+++  F+  V + R           L  G IWTG +A  +GL+D +G    V + 
Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKDHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +         + I ++   ++ +    K L  S  + + I ++       L
Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 331


>gi|254252862|ref|ZP_04946180.1| Periplasmic serine protease [Burkholderia dolosa AUO158]
 gi|124895471|gb|EAY69351.1| Periplasmic serine protease [Burkholderia dolosa AUO158]
          Length = 331

 Score =  150 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/286 (23%), Positives = 123/286 (43%), Gaps = 17/286 (5%)

Query: 7   KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           KI  R+    +  L+   ++ FS  +       H A + I G+I      ++ ++   ++
Sbjct: 45  KIFFRFAFLGVFLLLAFALIDFSSDAKFASGGRHTALVTIDGEIAAGTNANADDINTALD 104

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115
               DD    +++ ++SPGGS      ++  I++++ +   KP+   V +M AS GY I+
Sbjct: 105 AAFDDDGTAGVVLRINSPGGSPVQAGMVYDEIKRLRAKYPDKPLYVVVTDMCASGGYYIA 164

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         + KLGV  +   S   K    PFS   PK  
Sbjct: 165 SAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFYDPFSPETPKMD 224

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q+++D  +  F++ V + R     +T  +  G  WTG ++ ++GL D  G  + V +
Sbjct: 225 AHAQELLDQVHAQFIKAVKDGRGKRLRETPDMFSGLFWTGEKSVELGLADGYGTTDTVAR 284

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
            +           + D+   ++      +    +        L   
Sbjct: 285 DVLK------APDLVDYTVKESLTNRVARKFGAAVGSAAMKALTAG 324


>gi|254445955|ref|ZP_05059431.1| signal peptide peptidase SppA, 67K type [Verrucomicrobiae bacterium
           DG1235]
 gi|198260263|gb|EDY84571.1| signal peptide peptidase SppA, 67K type [Verrucomicrobiae bacterium
           DG1235]
          Length = 598

 Score =  150 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 125/283 (44%), Gaps = 14/283 (4%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATAL 69
           ++          +  +   VA I   G I + +          L   I +  +DD   A+
Sbjct: 295 SMGDYLLDKVKPMYSSDGFVAVIYAEGTIVNGEGNEGQVGGSGLARVIRKARQDDRVKAI 354

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           ++ ++SPGGSA A E I R ++  K + PV+  +  +AAS GY IS  ++ I A   +L 
Sbjct: 355 VLRVNSPGGSALASEVIQREMRLAKEKMPVVVSMGSVAASGGYWISAYADRIFAQPNTLT 414

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+  +   +      GV+  +VK++      + F     + + ++Q  VD  Y  F
Sbjct: 415 GSIGVIGVFFNYEELAATHGVNFDTVKTTEHADLMAQFRPKTEREMSLVQRHVDVIYDSF 474

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           +  V+E R +  +    +++GRIW+GA+A ++GL+D +GG  E                +
Sbjct: 475 LAKVAEGRGLELEAVAEIAEGRIWSGADALELGLVDELGGLGEAIAYAGEQADLGEGPAV 534

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
            +    +N+    L  +S     E          ++ L  ++ 
Sbjct: 535 MELPEARNFLQDLLSGVS-----EQAADAKANLALRPLVDLYR 572



 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 105/306 (34%), Gaps = 32/306 (10%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED---------------------- 49
             +L ++   V+        +  +  V    +   I+D                      
Sbjct: 22  LFILVVILFGVISSMSQPLPQVVNGSVLVFDMSASIQDRPVGMTRDAFIDEAIGGQRLRK 81

Query: 50  --SQELIERIERISRDDSATALIVSLSSP---GGSAYAGE-AIFRAIQKVKNRKPVITEV 103
              + L   I   + DD    L+++ S      GS +A    +  A++        +   
Sbjct: 82  ISLRTLTRGIRAAASDDRIEGLLLTGSFAVEGYGSGFAALKEVHEAVEVFSESGKPVWAY 141

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
                +    +  A++ I      +V   G+   YPY+  F+ K GV ++  ++   KA 
Sbjct: 142 VVYPTARDMYVISAADTIYMNPEGVVSDTGMSMSYPYLGGFMKKYGVGVQVTRAGDYKAA 201

Query: 164 PSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKK 220
              F    ++  + +    V++  +  ++ +++    I   +   + +   + T  +A++
Sbjct: 202 AESFVLEGMSEPSREANAAVLEDFWSEYLSVIANGAGIEAAEYERMLNELGMLTAVDAER 261

Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
           +GL+D +   +E+  +L  +                +Y    +K +  S      I   +
Sbjct: 262 LGLVDELMFTDELIAALRKVSGVDEESNSFRQTSMGDYLLDKVKPMYSSDGFVAVI-YAE 320

Query: 281 QTKVQG 286
            T V G
Sbjct: 321 GTIVNG 326


>gi|53804454|ref|YP_113935.1| signal peptide peptidase SppA [Methylococcus capsulatus str. Bath]
 gi|53758215|gb|AAU92506.1| putative signal peptide peptidase SppA [Methylococcus capsulatus
           str. Bath]
          Length = 327

 Score =  150 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 125/292 (42%), Gaps = 22/292 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSH------VEDNSPHVARIAIRGQI-----EDSQELI 54
           ++    +    +  + +                    H A + + G I      D+  +I
Sbjct: 40  RRWNLAFRAFLVAAIGLGLVLAFKPLAHDGLTASGKSHTAVVDVTGTIAEGGETDADTII 99

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAG 111
           E +   +       +++ +++PGGS      ++  I+++K   P   V   V ++ AS G
Sbjct: 100 EGLREAAEAKGVKGIVLRMNTPGGSPVQSAYVYDEIRRIKKEHPALPVYAVVTDVCASGG 159

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I     S+VGSIGV+         L+KLGV  + + +   KA   PF  V+
Sbjct: 160 YYIASATDRIFVNPASIVGSIGVIMNGFGFVGTLEKLGVERRVMTAGDHKAILDPFGPVD 219

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
           P   Q +Q ++++ +  F+  V   R         +  G +WTGAE  ++GL+D VG   
Sbjct: 220 PVEKQHVQRLLNTVHQQFIAAVKAGRGDRLKDRPEIFSGLVWTGAEGIELGLVDAVGELH 279

Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
           EV +++         ++I +++  +      ++ L  S  LE  +  +  + 
Sbjct: 280 EVAETVIG------AKEIVNYSHRETLLDRVVRQLGTS--LEAALTKLSASS 323


>gi|160900710|ref|YP_001566292.1| peptidase S49 [Delftia acidovorans SPH-1]
 gi|160366294|gb|ABX37907.1| peptidase S49 [Delftia acidovorans SPH-1]
          Length = 348

 Score =  150 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/279 (23%), Positives = 122/279 (43%), Gaps = 7/279 (2%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISRD 63
           +  +  L LV L V++   ++    +SPH A + ++G+I    +     ++  +     D
Sbjct: 70  RLLWTALILVVLWVLFAKDTATTTSSSPHTAVVEVKGEIAAGADASAEFVVAAMRSAFED 129

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNII 121
             + A+++ ++SPGGS      I   I ++K +  KP+   V E  ASA Y I+ A++ I
Sbjct: 130 SGSRAVVLLINSPGGSPVQAGIINDEIVRLKGKYDKPLYAVVEETCASAAYYIAAAADEI 189

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
              + S+VGSIGVL         ++KLGV  + + +   K    PFS ++    +    +
Sbjct: 190 FVDKASIVGSIGVLMDGFGFTGAMEKLGVERRLLTAGENKGFLDPFSPMSEGQREHAHKM 249

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           +   +  F+ +V   R     +T     G  WTG +A ++GL D +G  + V + +    
Sbjct: 250 LGQIHSQFINVVKAGRGDRLHETPETFSGLFWTGQQAVEMGLADKLGSLDYVAREVVKAE 309

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
                 +  +        F           L  ++P ++
Sbjct: 310 EVVDYTRRDNVAERLAKRFGAAFGGGAVQALRSSLPALR 348


>gi|302187284|ref|ZP_07263957.1| peptidase S49, SppA [Pseudomonas syringae pv. syringae 642]
          Length = 332

 Score =  150 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 18/291 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61
             K        V + V    +       S H A I ++G I D     ++ ++  +++  
Sbjct: 49  FFKLLTFAFLFVAVVVPMLDFEGGTSRRSSHTALIDVQGVIADKESASAENIVTALQKAF 108

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118
            D+    +I+ ++SPGGS      ++  I++++  KP I     +    AS  Y I+ A+
Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAAKPDIKVYAVITDLGASGAYYIASAA 168

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I A + SLVGSIGV          +DKLGV  ++  S   KA   PF        Q  
Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Q V+D+++  F+  V + R           L  G IWTG +A  +GL+D +G    V + 
Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKEHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +         + I ++   ++ +    K L  S  + + I ++       L
Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 331


>gi|66044886|ref|YP_234727.1| peptidase S49, SppA [Pseudomonas syringae pv. syringae B728a]
 gi|63255593|gb|AAY36689.1| Peptidase S49, SppA [Pseudomonas syringae pv. syringae B728a]
          Length = 332

 Score =  150 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 18/291 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61
             K        V + V    +       S H A I ++G I D     ++ ++  +++  
Sbjct: 49  FFKLLTFAFLFVAVIVPMLDFEGGTSRRSSHTALIDVQGVIADKEAASAENIVTALQKAF 108

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118
            D+    +I+ ++SPGGS      ++  I++++  KP I     +    AS  Y I+ A+
Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAAKPDIKVYAVITDLGASGAYYIASAA 168

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I A + SLVGSIGV          +DKLGV  ++  S   KA   PF        Q  
Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Q V+D+++  F+  V + R           L  G IWTG +A  +GL+D +G    V + 
Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKDHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +         + I ++   ++ +    K L  S  + + I ++       L
Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 331


>gi|254818384|ref|ZP_05223385.1| hypothetical protein MintA_00577 [Mycobacterium intracellulare ATCC
           13950]
          Length = 595

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 32/298 (10%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED----------------SQELIERIERISRDDSATAL 69
           + S       P VA I + G I D                S  +   +   + DDS +A+
Sbjct: 292 APSVPGRRPKPTVAVINVDGTIVDGRGGPQFLPFGTSTVGSDTIAPALREAAADDSVSAI 351

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           +V ++SPGGS  A E ++R ++K + R KPV+  +  +AAS GY I+ A++ +VA+  ++
Sbjct: 352 VVRVNSPGGSVTASETLWREVKKARKRGKPVVASMGSVAASGGYYIAVAADAVVASPATI 411

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIGVL     ++  L +LGV   +V+++      +  +   P+     +   D  Y  
Sbjct: 412 TGSIGVLTGKLVIRDLLGRLGVGSDTVRTNANADAWAIDTPFTPEQRAHREAEADLLYAD 471

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           FV  V++ RN+  D    ++ GR+WTGA+A + GL+D +GG     +    L        
Sbjct: 472 FVARVADGRNLTKDAVDRVARGRVWTGADALERGLVDELGGFRTALRRAKILAGLDEDAD 531

Query: 249 IKDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW-----------AVW 291
           ++    P       L+    +   ++ L D +  +    + G+            A+W
Sbjct: 532 VRIVTYPGGSLLDMLRPRASSQPAAASLPDALGALLGRTIGGIVDNVERSVSGASALW 589



 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 77/227 (33%), Gaps = 5/227 (2%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
              ++ +  I R + D     LI  +      + A + +  AI      KP +       
Sbjct: 66  VSLRDTVSAIYRAAEDPRVAGLIARVQLTASPSAAVQELREAIVAFTAAKPSLAWAETYP 125

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPS 165
            +  Y ++ A   +       VG IG      +++   DK G+  + V     K+     
Sbjct: 126 GTLSYYLASAFGEVWMQPAGSVGLIGFASNATFLRDAFDKAGIEAEVVARGEYKSAANRF 185

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
                     + +  +++S        V  SR +       L+D       EA   GL+D
Sbjct: 186 TEHGFTEAHREAVTRMLESIREQVWEAVGTSRKLDAAALDALADRAPLLREEAVSSGLVD 245

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
            +G ++E +  +  L   +    + + N P   +       + S L+
Sbjct: 246 RIGFRDEAYDRIAELVGVKD---VSEENAPPRLYLSRYAGAARSRLI 289


>gi|163757833|ref|ZP_02164922.1| proteinase IV protein [Hoeflea phototrophica DFL-43]
 gi|162285335|gb|EDQ35617.1| proteinase IV protein [Hoeflea phototrophica DFL-43]
          Length = 322

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 103/280 (36%), Positives = 164/280 (58%), Gaps = 12/280 (4%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                   +  S H+ARI I G I D ++LI+ IE  +  ++A AL+V +SSPGG+ Y G
Sbjct: 35  LAFNLDGPDTGSDHIARIDISGVISDDEDLIDLIEDAASSETAKALVVRISSPGGTTYGG 94

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           E I++A+ +    KPV+ +V  +AASAGY+I+ +S+ IVA E+S+VGSIGV+FQY   + 
Sbjct: 95  ERIYKALLEAGKSKPVVADVRTLAASAGYMIAASSDHIVAGESSIVGSIGVIFQYAQAQE 154

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L+K+G+ I+ +KS+P+KAEPSPF + + +A  M++ +V  SY WFV LV+E R +    
Sbjct: 155 LLNKIGLRIEEIKSAPLKAEPSPFHDTSEEAKAMIRAMVLDSYDWFVDLVTERRGMTRAD 214

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
            L L+DG I+TG +A   GL+D +GG+ E+   L +    ++  +I +W    +     +
Sbjct: 215 VLALADGSIFTGRQALGNGLVDAIGGEAEIRAYLESR-DVEADLEIIEWEKQSDPARRLI 273

Query: 264 KNLSISSL---------LEDTIPLMKQ--TKVQGLWAVWN 292
              ++  +         L D I  +      + GL +VW 
Sbjct: 274 GAQAVDLIASYFGVPMRLSDEIDRLSGGKLFLDGLVSVWQ 313


>gi|16080005|ref|NP_390831.1| signal peptide peptidase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221310897|ref|ZP_03592744.1| signal peptide peptidase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315223|ref|ZP_03597028.1| signal peptide peptidase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221320141|ref|ZP_03601435.1| signal peptide peptidase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324422|ref|ZP_03605716.1| signal peptide peptidase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|14548269|sp|O34525|SPPA_BACSU RecName: Full=Putative signal peptide peptidase sppA
 gi|2293234|gb|AAC00312.1| putative protease [Bacillus subtilis]
 gi|2635437|emb|CAB14931.1| signal peptide peptidase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 335

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 146/319 (45%), Gaps = 42/319 (13%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSS------------------------HVEDNSPHVARI 41
           K+     + L +  ++++     S                             S  +A +
Sbjct: 4   KRWIALVIALGIFGVSIIVSISMSFFESVKGAQTDLTSLTDESQEKTLENGSPSSKIAVL 63

Query: 42  AIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
            + G I+D+              +  ++ +ER   D +   +++ ++SPGG  Y    I 
Sbjct: 64  EVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIH 123

Query: 88  RAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           + ++++K   +KP+   +  MAAS GY IS A++ I A   +L GS+GV+ +        
Sbjct: 124 KKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLA 183

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           DKLG+S +++KS   K   SP  E+  +   +MQ +VD+SY  FV ++S+ R +P  +  
Sbjct: 184 DKLGISFETIKSGAHKDIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVK 243

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            ++DGR++ G +AKK+ L+D +G  ++   ++     D     +  +   +++    L +
Sbjct: 244 KIADGRVYDGRQAKKLNLVDELGFYDDTITAMKKDHKDLKNASVISYE--ESFGLGSLFS 301

Query: 266 LSISSLLEDTIPLMKQTKV 284
           +  + + +  I  +   ++
Sbjct: 302 MGANKMFKSEIDFLNMREI 320


>gi|88607225|ref|YP_504886.1| signal peptide peptidase SppA, 36K type [Anaplasma phagocytophilum
           HZ]
 gi|88598288|gb|ABD43758.1| signal peptide peptidase SppA, 36K type [Anaplasma phagocytophilum
           HZ]
          Length = 298

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 155/289 (53%), Gaps = 17/289 (5%)

Query: 8   IKTRYVMLSLVTLTVVY------FSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERIS 61
            +  + ++  + +          FS++        +VARI I G I  +++    + R+ 
Sbjct: 18  WRALFFVVLGLLVVFASQVDYSRFSFADIAGGAGGYVARIGIEGTIGRNKDRTALLSRVE 77

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
            D S  A+++ + SPGG+    E ++R I+ +  +KPV+  +  +AAS GY+ + A++ +
Sbjct: 78  DDSSIKAVVLRIDSPGGTVGDSEELYRQIRAIAEKKPVVAVMGNVAASGGYMTALAADHV 137

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
           +A   ++ GSIGVL QY  V    ++LG+++K++K+S +KA  SP  E++  +  +M ++
Sbjct: 138 IANNGTITGSIGVLTQYVGVARIAERLGITLKTIKTSELKASMSPLEEMSKNSEDVMHEL 197

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           +   +H+FV +V+E R +  ++   ++DGR++TGA+A +V L+D +GG+ E  + L +  
Sbjct: 198 IKDFHHFFVSMVAERRGLSEEEAYKVADGRVYTGAQALQVKLVDELGGEREALEWLKSHH 257

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
              + + +      ++              L   + ++ ++  Q L+A+
Sbjct: 258 NIDTEKVVVRDLEYQSRL-----------SLMGGLRMLLESFKQPLYAL 295


>gi|167586612|ref|ZP_02379000.1| peptidase S49 [Burkholderia ubonensis Bu]
          Length = 330

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 64/272 (23%), Positives = 120/272 (44%), Gaps = 17/272 (6%)

Query: 7   KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           KI  R+    +  L+   ++ FS  +    +  H A + I G+I      ++ ++   + 
Sbjct: 45  KIFFRFAFLGVFLLLAFALIDFSSDAKFSTSGRHTAVVTIDGEIAAGVNANADDINTALN 104

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115
               DD    +++ ++SPGGS      ++  I++++ +   KP+   V +M AS GY I+
Sbjct: 105 AAFDDDGTVGVVLQINSPGGSPVQAGMVYDEIKRLRAKYPGKPLYVVVTDMCASGGYYIA 164

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         ++KLG+  +   S   K    PFS   PK  
Sbjct: 165 AAADRIYVDKASIVGSIGVLMDGFGFTGLMNKLGIQRRLHTSGENKGFYDPFSPETPKMD 224

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q ++D  +  F++ V + R     +T  +  G  WTG +  ++GL D  G  + V +
Sbjct: 225 THAQALLDQVHAQFIKAVKDGRGARLHETPDMFSGLFWTGEKGVELGLADGFGTTDSVAR 284

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
            +           + D+   ++      +   
Sbjct: 285 DVLK------APDLVDYTVKESLTNRVARKFG 310


>gi|330962630|gb|EGH62890.1| peptidase S49, SppA [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 332

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 16/275 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61
             K    +   V + +    +       + H A I ++G I D     ++ ++  +    
Sbjct: 49  FFKLLTFVFLFVAVVLPMLDFEGGTSRRASHTALIDVQGVIADKESASAENIVTALRDAF 108

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118
            D+    +I+ ++SPGGS      ++  I++++  KP I     +    AS  Y I+ A+
Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAEKPDIKVYAVITDLGASGAYYIASAA 168

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I A + SLVGSIGV          ++KLGV  ++  S   KA   PF        Q  
Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMEKLGVDRRTYTSGEHKAFLDPFQPQKTDETQFW 228

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Q V+D+++  F+  V + R           L  G IWTG +A  +GL+D +G    V + 
Sbjct: 229 QSVLDTTHRQFIASVKQGRGDRLKDKDHPELFSGLIWTGEQAVGLGLVDGLGSASYVARD 288

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           +         + I ++   ++ +    K L  S  
Sbjct: 289 VIK------EKNIVEYTVEESPFDRFSKKLGASIA 317


>gi|154687074|ref|YP_001422235.1| hypothetical protein RBAM_026460 [Bacillus amyloliquefaciens FZB42]
 gi|154352925|gb|ABS75004.1| SppA [Bacillus amyloliquefaciens FZB42]
          Length = 335

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 68/319 (21%), Positives = 145/319 (45%), Gaps = 42/319 (13%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSS------------------------HVEDNSPHVARI 41
           K+     + L +  ++V+                                      +A +
Sbjct: 4   KRWIALVIALGIFGVSVIASVTVGVLKNIGDTGSDFASLTDDTEEVTLDKGSPGSKIAVL 63

Query: 42  AIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
            + G IED+              +  ++++ER   D S   +++ ++SPGG  Y    I 
Sbjct: 64  EVDGTIEDNGGSAGLLSSGGYDHRSFLKQVERAKEDKSVKGIVLKINSPGGGVYESAEIH 123

Query: 88  RAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           + ++++K   +KP+   +  MAAS GY IS A++ I A+  +L GS+GV+ +        
Sbjct: 124 KKLEELKKETKKPIYVSMGSMAASGGYYISTAADKIYASPETLTGSLGVIMESVNYSKLA 183

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           D+LG+  +++KS   K   SP  ++  +  ++MQ +V+ SY  FV ++S+ R++      
Sbjct: 184 DELGIKFETIKSGAHKDIMSPTRDMTKEERKIMQTMVNDSYEGFVNVISKGRHMSKADVK 243

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            ++DGR++ G +AKK+GL+D +G  ++   ++     +     +  +   + +    L +
Sbjct: 244 KIADGRVYDGRQAKKIGLVDDLGFYDDTISAMKKDHKNMKNASVITYE--EGFGLGSLFS 301

Query: 266 LSISSLLEDTIPLMKQTKV 284
           +S + + +  I  +   ++
Sbjct: 302 MSAAKMFKSEIDFLNMKEL 320


>gi|254491611|ref|ZP_05104790.1| peptidase, S49 (protease IV) family [Methylophaga thiooxidans
           DMS010]
 gi|224463089|gb|EEF79359.1| peptidase, S49 (protease IV) family [Methylophaga thiooxydans
           DMS010]
          Length = 327

 Score =  149 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 72/270 (26%), Positives = 118/270 (43%), Gaps = 14/270 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERIS 61
            +   +++L LV   ++ F  +        H A I I G I    E     ++  I    
Sbjct: 49  YVFKAFILLYLVAFLILSFKPAGLKTVTDAHTALIDINGVIAADAEANADAVVTGIREAF 108

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV---ITEVHEMAASAGYLISCAS 118
             ++A  LI+ L++PGGS      I   I++++  KP       V ++ AS GY I+ A+
Sbjct: 109 DSETAKGLILRLNTPGGSPVQAGIINDEIRRLQKEKPDFPVYAVVQDVCASGGYYIAVAA 168

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I A + S+VGSIGV          ++K+GV  +S+ +   KA   PF  +    V   
Sbjct: 169 DEIYADKASIVGSIGVRMDSFGFTEAIEKIGVERRSLTAGENKAFLDPFLPMKAADVDHA 228

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
            D++D+ +  F+ +V E R         L  G  W+G +A ++GLID +    +V + L 
Sbjct: 229 HDMLDNIHQQFITVVKEGRGERLKDNDELFSGLFWSGEQALELGLIDGLASSSKVARELI 288

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
                     I D+ P  NY       L  
Sbjct: 289 G------AEDIIDYTPRPNYLDRFAGKLGA 312


>gi|218779085|ref|YP_002430403.1| signal peptide peptidase SppA, 36K type [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760469|gb|ACL02935.1| signal peptide peptidase SppA, 36K type [Desulfatibacillum
           alkenivorans AK-01]
          Length = 324

 Score =  149 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 137/319 (42%), Gaps = 34/319 (10%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSH--------------VEDNSPHVARIAIRGQIEDS---- 50
           K+  ++++L+   +   S S +                +    V  I + G I D+    
Sbjct: 3   KSFILLIALIVFLLPGCSPSFNLFKDASDPLKEHAVSGEGKDKVLMITVAGVISDTPSNE 62

Query: 51  ---------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPV 99
                    QE++ ++     DD+  A+++ + SPGG+A A + ++  I++ K +  K V
Sbjct: 63  LFSSKPSVVQEVVSQLRMAEEDDAVKAVVIKVDSPGGTATASDILYHEIKEFKEKTGKKV 122

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
           +     +AAS GY +S  ++ IVA  TS+ GS+GV+   P  K  +DK+GV ++  KS  
Sbjct: 123 MCVFMNVAASGGYYMSLPADRIVAHPTSITGSVGVIMVQPAFKDLMDKVGVGMRVSKSGR 182

Query: 160 MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAK 219
            K   SPF +   + V+++  V++     FV  V + RN+  +    +   RI+  ++A 
Sbjct: 183 NKDMGSPFRDPTDEEVRLLNGVINDLAEQFVGHVKDHRNLTPEALEEVRTARIFVASKAL 242

Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI--- 276
           ++GLID V    +       +       K+  +   K             S ++  +   
Sbjct: 243 ELGLIDEVAYLPQAIDEAKEMAEIPEDSKVVVYRRSKIANDTVYNIAGSQSSVKGALVNV 302

Query: 277 --PLMKQTKVQGLWAVWNP 293
             P        G + +W P
Sbjct: 303 NFPTGYSDLPMGFYYLWAP 321


>gi|332296593|ref|YP_004438516.1| signal peptide peptidase SppA, 36K type [Thermodesulfobium
           narugense DSM 14796]
 gi|332179696|gb|AEE15385.1| signal peptide peptidase SppA, 36K type [Thermodesulfobium
           narugense DSM 14796]
          Length = 289

 Score =  149 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 78/276 (28%), Positives = 136/276 (49%), Gaps = 7/276 (2%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERIS 61
           +LK++    + L ++T+       ++  +     V  I I G I D  S+ +   I R  
Sbjct: 1   MLKRLSLALIFLLILTIVFSLGYMAAKFKPAGAKVGYIEINGTINDQTSESVSSAIRRAK 60

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASN 119
           +D +   +++ ++SPGGS  A + IF  +   K    KP+I  + ++AAS GY +S A +
Sbjct: 61  QDPNIRGILLRVNSPGGSVGASQEIFETLMNYKESTGKPIIVSMGDVAASGGYYVSLAGD 120

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179
            I A  ++L GSIGV+     +   +  +G+  +++K+   K   S F  + PK  + + 
Sbjct: 121 KIFALPSTLTGSIGVIANILDIHELMKNIGIKEETLKTGEYKDTGSMFRSLTPKDKEYLM 180

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
            ++  SY  F+  VS  RNIP DK   ++DGR+++GA+AK +GLID +G   +    +  
Sbjct: 181 GLIGDSYGQFLYDVSTRRNIPLDKLKSIADGRVFSGAKAKSLGLIDELGTLNDTIDYMKN 240

Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
           L   +   KI            +L N S  + +E  
Sbjct: 241 LLGVK---KITLEKLNSKNILEELMNTSSKTDVEQK 273


>gi|218297242|ref|ZP_03497898.1| signal peptide peptidase SppA, 36K type [Thermus aquaticus Y51MC23]
 gi|218242435|gb|EED08975.1| signal peptide peptidase SppA, 36K type [Thermus aquaticus Y51MC23]
          Length = 311

 Score =  149 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 125/256 (48%), Gaps = 5/256 (1%)

Query: 35  SPHVARIAIRGQIEDS---QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
              V  + ++G I      ++ + ++ +   D    A+++ + SPGG     EAI RA++
Sbjct: 45  GEKVLLLELKGTIPTDKALEDFLSQVRQAKEDPGIKAVVLEVVSPGGGVTETEAIHRALK 104

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           ++   KP++  +  +AAS GY  + A+  I  A T++ GSIG +     ++  LDKLGV 
Sbjct: 105 ELAREKPLVASLGTVAASGGYYAATAAREIFTAPTTITGSIGAISIQSQIQGLLDKLGVE 164

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
           ++ +K    K   S    + P+   ++Q  +  +Y  FV+ V+E R +P ++   L+DGR
Sbjct: 165 VEVLKEGKFKDMASGLRPLTPEEKAVIQGYLREAYELFVKRVAEGRRMPPEEVYRLADGR 224

Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK--NYWFCDLKNLSIS 269
           I++GA+A  +GL D  G  E+  Q    L      R ++   P         D    S +
Sbjct: 225 IYSGAQALALGLADREGYLEDAAQRAAELAGLTGFRLVRYKKPKGLLAELLGDEPPFSFA 284

Query: 270 SLLEDTIPLMKQTKVQ 285
           S  +  +  + Q++ +
Sbjct: 285 SDTQALLQALAQSRFR 300


>gi|15598169|ref|NP_251663.1| peptidase [Pseudomonas aeruginosa PAO1]
 gi|107102522|ref|ZP_01366440.1| hypothetical protein PaerPA_01003586 [Pseudomonas aeruginosa PACS2]
 gi|116050975|ref|YP_790200.1| putative peptidase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254235947|ref|ZP_04929270.1| hypothetical protein PACG_01902 [Pseudomonas aeruginosa C3719]
 gi|254241681|ref|ZP_04935003.1| hypothetical protein PA2G_02387 [Pseudomonas aeruginosa 2192]
 gi|296388534|ref|ZP_06878009.1| putative peptidase [Pseudomonas aeruginosa PAb1]
 gi|313108158|ref|ZP_07794293.1| putative peptidase [Pseudomonas aeruginosa 39016]
 gi|9949072|gb|AAG06361.1|AE004723_5 probable peptidase [Pseudomonas aeruginosa PAO1]
 gi|115586196|gb|ABJ12211.1| putative peptidase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167878|gb|EAZ53389.1| hypothetical protein PACG_01902 [Pseudomonas aeruginosa C3719]
 gi|126195059|gb|EAZ59122.1| hypothetical protein PA2G_02387 [Pseudomonas aeruginosa 2192]
 gi|310880795|gb|EFQ39389.1| putative peptidase [Pseudomonas aeruginosa 39016]
          Length = 326

 Score =  149 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 131/298 (43%), Gaps = 24/298 (8%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSS------HVEDNSPHVARIAIRGQIEDSQ-----ELI 54
           ++    +  L+ + L VV  ++S           +  H A I ++G I D +      ++
Sbjct: 36  RRWGIFFKSLTFIYLFVVLLAFSPFGSLEKSASRSGSHTALIEVKGMIADDEPASADNIV 95

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV---HEMAASAG 111
             +    +D+    +++ ++SPGGS      I+  I++++   P +       ++ AS  
Sbjct: 96  TALRAAFKDEGTKGIVLRINSPGGSPVQSGYIYDEIRRLRGEHPNVKVYAVISDLGASGA 155

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I A + SLVGSIGV          ++KLGV  +   S   K+   PF    
Sbjct: 156 YYIASAADQIYADKASLVGSIGVTAASFGFVGTMEKLGVERRVYTSGEHKSFLDPFQPQK 215

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--LVLSDGRIWTGAEAKKVGLIDVVGG 229
           P+  Q  Q V+D+++  F+  V + R           L  G +W+G +A ++GLID +G 
Sbjct: 216 PEETQFWQQVLDTTHKQFIDSVKKGRGDRLKVEGHPELFSGLVWSGEQALQLGLIDGLGN 275

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
              V + +         +KI+D+   ++ +    K    S  + + + L    +   L
Sbjct: 276 ASYVAREVVK------EKKIEDYTVQESPFDRFAKKFGAS--VAERLALWMGWQGPVL 325


>gi|90021269|ref|YP_527096.1| putative peptidase [Saccharophagus degradans 2-40]
 gi|89950869|gb|ABD80884.1| peptidase S49 [Saccharophagus degradans 2-40]
          Length = 329

 Score =  149 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 69/274 (25%), Positives = 119/274 (43%), Gaps = 15/274 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIE 58
           V K +   Y +  ++ L V     S  V     H A + +RG I   +E     +   + 
Sbjct: 44  VFKTLTFAY-LFVVLMLFVAGAQQSGVVNVTEDHTAVVMVRGAIAGDKEASAPRINAALR 102

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLIS 115
               ++ A A++++++SPGGS      ++  I ++      K V   + ++ AS  Y IS
Sbjct: 103 AAFENEHAKAIVLAVNSPGGSPVQSAYVYDEIMRLKKEYPDKKVYAVIEDIGASGAYYIS 162

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I A  +SLVGSIGV+         ++KLGV  +   S   KA   PFS  N +  
Sbjct: 163 AAADEIYANRSSLVGSIGVIASGFGFTGTMEKLGVERRVYTSGENKAFLDPFSPANEQHE 222

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           +  + V+   +  F+  V   R         +  G IW G  A ++GLID +G   +V +
Sbjct: 223 EFWEGVLAEVHVQFMDAVKAGRGDRLKDNDTVFSGLIWNGERALEMGLIDGLGSARDVAR 282

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
            +          K+ D+   K+     + +  +S
Sbjct: 283 DVIKH------EKLVDYTRRKSPLQELMNSFGVS 310


>gi|256822612|ref|YP_003146575.1| signal peptide peptidase SppA, 67K type [Kangiella koreensis DSM
           16069]
 gi|256796151|gb|ACV26807.1| signal peptide peptidase SppA, 67K type [Kangiella koreensis DSM
           16069]
          Length = 619

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 73/270 (27%), Positives = 127/270 (47%), Gaps = 14/270 (5%)

Query: 30  HVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSA 80
            +  N   VA I  +G+I D                I++   DD   A+++ + SPGGSA
Sbjct: 316 ELPSNKDTVAVIVAKGEIVDGSRKEGVIGGDSTARLIQKARLDDKVKAIVLRVDSPGGSA 375

Query: 81  YAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +A E I   +++ +N  K V+  +  +AAS GY IS  S+ I A  T++ GSIG+    P
Sbjct: 376 FASEVIRSELERAQNEGKIVVASMGGVAASGGYWISATSDEIWAHPTTITGSIGIFGMIP 435

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
             +  L+KLGV    V ++       P   ++P+  Q++Q  ++  Y  F+ LV E RN+
Sbjct: 436 TFEEPLNKLGVYRDGVGTTKWTLAFDPMDGISPEIAQLIQRSIERGYERFLSLVGEGRNM 495

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN-- 257
             ++   ++ GR+W+G +A ++GL+D +G  E+  +S   L        +K      +  
Sbjct: 496 TIEEVDQIAQGRVWSGEDAHRLGLVDQLGDLEDAIESAAKLANIGDDYAVKFIKRELSAE 555

Query: 258 --YWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
             +    L        L+  I  +K ++  
Sbjct: 556 EIFIRNLLDQAKAEGKLDAVIAQLKDSETD 585



 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 97/280 (34%), Gaps = 37/280 (13%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51
           + +     +   +       S     + +      +A +G I + +              
Sbjct: 18  RLMIGLIALTIFILFVRGCASGPDLPKVDDGAALILAPKGIIVEQETYLDPVARAMQEAQ 77

Query: 52  ----------ELIERIERISRDDSATALIVSLSSPGG---SAYAGEAIFRAIQKVKNRKP 98
                     +L++ IE    DD  + ++++++S  G        + + RAI   K    
Sbjct: 78  GTAPNETSIYDLLDAIEYAKNDDRISVMVINVNSLQGVYAGISKYQDLRRAIDDFKESGK 137

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            +  V +      Y ++ +++ +      ++   G+     Y K  LD LGV +   +  
Sbjct: 138 KVIAVGDYYMQGQYYLASSADEVYMNPFGMLMFEGLGRNGTYFKSALDNLGVKVHVFRVG 197

Query: 159 PMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW--- 213
             K+   PF   +++  A +   + +   +    + ++ SRN+  ++     +  +    
Sbjct: 198 TFKSAVEPFIRDDMSEAAKEANLEWLGDLWTHMKQDLAASRNMSVEEFDSFIENYLVKFE 257

Query: 214 -----TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                +G  A + G +D +  + E  Q +  +      + 
Sbjct: 258 AANGDSGELAVQEGFVDKLMTRGEFRQYMIDMVGLNEKKD 297


>gi|74317578|ref|YP_315318.1| protease [Thiobacillus denitrificans ATCC 25259]
 gi|74057073|gb|AAZ97513.1| protease [Thiobacillus denitrificans ATCC 25259]
          Length = 313

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 62/281 (22%), Positives = 119/281 (42%), Gaps = 15/281 (5%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS----QELIERIERISRDDSAT 67
           ++ L +V   V  +     V     H A + ++G I         +I  ++    D    
Sbjct: 39  FLYLFIVLFLVAGWFGDDGVGIPKAHTALVDLQGVIASDQASADAVITSLQSAFEDKKTK 98

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCASNIIVAA 124
            +++ ++SPGGS      I+  I+++     + P+   V ++ AS GY ++  ++ I   
Sbjct: 99  GVVLRINSPGGSPVQAGQIYDEIRRLRKLHPQVPLYAVVDDICASGGYYVAVGADKIFVD 158

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
           + S+VGSIGVL         + KLGV  + + +   K    PFS VNP+     + +++ 
Sbjct: 159 KASIVGSIGVLMDGFGFTETMQKLGVERRLLTAGENKGFLDPFSPVNPEQQAYAKQMLEE 218

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            +  F+  V E R     +T  +  G +W+G  + ++GL D +G  + V + +       
Sbjct: 219 IHGQFIATVREGRGKRLKETPDMFTGLVWSGERSIQLGLADEIGSLDTVARDVIK----- 273

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
               I D+   ++        L     +   + L  +  VQ
Sbjct: 274 -AEDIVDFTKEESLAERLAGRLGA--TMAKAMGLTDRAGVQ 311


>gi|289756812|ref|ZP_06516190.1| protease IV SppA [Mycobacterium tuberculosis T85]
 gi|289712376|gb|EFD76388.1| protease IV SppA [Mycobacterium tuberculosis T85]
          Length = 466

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70
            S     + P +A + + G I                     +   +  ++ DDS +A++
Sbjct: 164 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 223

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + + SPGGS  A E I+R + + ++R KPV+  +  +AAS GY +S  ++ IVA   ++ 
Sbjct: 224 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 283

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+     V+   D+LGV   +V+++      S  +   P      +   D  Y  F
Sbjct: 284 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 343

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V  V+E R +  D   V++ GR+WTGA+A   GL+D +GG     +    L       ++
Sbjct: 344 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 403

Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288
           +  + P +  +  ++    +   ++ L D +  +    + G+ 
Sbjct: 404 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 446



 Score = 60.0 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQD 180
                 VG +G      +++  L K G+  + V     K+  + F+E        + +  
Sbjct: 3   CNPRGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTEDGFTDAHREAVTR 62

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           ++DS      + V++SRNI  D    L+D       +A   GLID +G +++ +  +  L
Sbjct: 63  MLDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIGFRDQAYARMAEL 122

Query: 241 GVDQS 245
              + 
Sbjct: 123 VGVEK 127


>gi|289760851|ref|ZP_06520229.1| protease IV sppA [Mycobacterium tuberculosis GM 1503]
 gi|289708357|gb|EFD72373.1| protease IV sppA [Mycobacterium tuberculosis GM 1503]
          Length = 364

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70
            S     + P +A + + G I                     +   +  ++ DDS +A++
Sbjct: 62  PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 121

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + + SPGGS  A E I+R + + ++R KPV+  +  +AAS GY +S  ++ IVA   ++ 
Sbjct: 122 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 181

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+     V+   D+LGV   +V+++      S  +   P      +   D  Y  F
Sbjct: 182 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 241

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V  V+E R +  D   V++ GR+WTGA+A   GL+D +GG     +    L       ++
Sbjct: 242 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 301

Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288
           +  + P +  +  ++    +   ++ L D +  +    + G+ 
Sbjct: 302 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 344


>gi|289446284|ref|ZP_06436028.1| protease IV sppA [Mycobacterium tuberculosis CPHL_A]
 gi|289419242|gb|EFD16443.1| protease IV sppA [Mycobacterium tuberculosis CPHL_A]
          Length = 613

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70
            S     + P +A + + G I                     +   +  ++ DDS +A++
Sbjct: 321 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 380

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + + SPGGS  A E I+R + + ++R KPV+  +  +AAS GY +S  ++ IVA   ++ 
Sbjct: 381 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 440

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+     V+   D+LGV   +V+++      S  +   P      +   D  Y  F
Sbjct: 441 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 500

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V  V+E R +  D   V++ GR+WTGA+A   GL+D +GG     +    L       ++
Sbjct: 501 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 560

Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288
           +  + P +  +  ++    +   ++ L D +  +    + G+ 
Sbjct: 561 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 603



 Score = 96.2 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 2/197 (1%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           ++ +  I R + D     LI  +  P   A A + +  AI      KP +        + 
Sbjct: 88  RDAVAAIHRAAEDPRVAGLIARVQLPPSPAGAVQELREAIAAFSAVKPSLAWAETYPGTL 147

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169
            Y ++ A   +    +  VG +G      +++  L K G+  + V     K+  + F+E 
Sbjct: 148 SYYLASAFGEVWMQPSGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTED 207

Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
                  + +  ++DS      + V++SRNI  D    L+D       +A   GLID +G
Sbjct: 208 GFTDAHREAVTRMLDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIG 267

Query: 229 GQEEVWQSLYALGVDQS 245
            +++ +  +  L   + 
Sbjct: 268 FRDQAYARMAELVGVEK 284


>gi|260185606|ref|ZP_05763080.1| protease IV sppA [Mycobacterium tuberculosis CPHL_A]
          Length = 590

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70
            S     + P +A + + G I                     +   +  ++ DDS +A++
Sbjct: 298 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 357

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + + SPGGS  A E I+R + + ++R KPV+  +  +AAS GY +S  ++ IVA   ++ 
Sbjct: 358 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 417

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+     V+   D+LGV   +V+++      S  +   P      +   D  Y  F
Sbjct: 418 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 477

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V  V+E R +  D   V++ GR+WTGA+A   GL+D +GG     +    L       ++
Sbjct: 478 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 537

Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288
           +  + P +  +  ++    +   ++ L D +  +    + G+ 
Sbjct: 538 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 580



 Score = 96.2 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 2/197 (1%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           ++ +  I R + D     LI  +  P   A A + +  AI      KP +        + 
Sbjct: 65  RDAVAAIHRAAEDPRVAGLIARVQLPPSPAGAVQELREAIAAFSAVKPSLAWAETYPGTL 124

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169
            Y ++ A   +    +  VG +G      +++  L K G+  + V     K+  + F+E 
Sbjct: 125 SYYLASAFGEVWMQPSGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTED 184

Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
                  + +  ++DS      + V++SRNI  D    L+D       +A   GLID +G
Sbjct: 185 GFTDAHREAVTRMLDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIG 244

Query: 229 GQEEVWQSLYALGVDQS 245
            +++ +  +  L   + 
Sbjct: 245 FRDQAYARMAELVGVEK 261


>gi|289749231|ref|ZP_06508609.1| protease IV sppA [Mycobacterium tuberculosis T92]
 gi|289689818|gb|EFD57247.1| protease IV sppA [Mycobacterium tuberculosis T92]
          Length = 567

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70
            S     + P +A + + G I                     +   +  ++ DDS +A++
Sbjct: 265 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 324

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + + SPGGS  A E I+R + + ++R KPV+  +  +AAS GY +S  ++ IVA   ++ 
Sbjct: 325 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 384

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+     V+   D+LGV   +V+++      S  +   P      +   D  Y  F
Sbjct: 385 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 444

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V  V+E R +  D   V++ GR+WTGA+A   GL+D +GG     +    L       ++
Sbjct: 445 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 504

Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288
           +  + P +  +  ++    +   ++ L D +  +    + G+ 
Sbjct: 505 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 547



 Score = 96.2 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 2/197 (1%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           ++ +  I R + D     LI  +  P   A A + +  AI      KP +        + 
Sbjct: 32  RDAVAAIHRAAEDPRVAGLIARVQLPPSPAGAVQELREAIAAFSAVKPSLAWAETYPGTL 91

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169
            Y ++ A   +    +  VG +G      +++  L K G+  + V     K+  + F+E 
Sbjct: 92  SYYLASAFGEVWMQPSGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTED 151

Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
                  + +  ++DS      + V++SRNI  D    L+D       +A   GLID +G
Sbjct: 152 GFTDAHREAVTRMLDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIG 211

Query: 229 GQEEVWQSLYALGVDQS 245
            +++ +  +  L   + 
Sbjct: 212 FRDQAYARMAELVGVEK 228


>gi|219556574|ref|ZP_03535650.1| protease IV [Mycobacterium tuberculosis T17]
          Length = 463

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70
            S     + P +A + + G I                     +   +  ++ DDS +A++
Sbjct: 161 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 220

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + + SPGGS  A E I+R + + ++R KPV+  +  +AAS GY +S  ++ IVA   ++ 
Sbjct: 221 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 280

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+     V+   D+LGV   +V+++      S  +   P      +   D  Y  F
Sbjct: 281 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 340

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V  V+E R +  D   V++ GR+WTGA+A   GL+D +GG     +    L       ++
Sbjct: 341 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 400

Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288
           +  + P +  +  ++    +   ++ L D +  +    + G+ 
Sbjct: 401 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 443



 Score = 58.1 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 2/124 (1%)

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDV 181
           A +  VG +G      +++  L K G+  + V     K+  + F+E        + +  +
Sbjct: 1   APSGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTEDGFTDAHREAVTRM 60

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           +DS      + V++SRNI  D    L+D       +A   GLID +G +++ +  +  L 
Sbjct: 61  LDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIGFRDQAYARMAELV 120

Query: 242 VDQS 245
             + 
Sbjct: 121 GVEK 124


>gi|215444849|ref|ZP_03431601.1| protease IV [Mycobacterium tuberculosis T85]
 gi|289568669|ref|ZP_06448896.1| protease IV sppA [Mycobacterium tuberculosis T17]
 gi|289542423|gb|EFD46071.1| protease IV sppA [Mycobacterium tuberculosis T17]
          Length = 458

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70
            S     + P +A + + G I                     +   +  ++ DDS +A++
Sbjct: 156 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 215

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + + SPGGS  A E I+R + + ++R KPV+  +  +AAS GY +S  ++ IVA   ++ 
Sbjct: 216 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 275

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+     V+   D+LGV   +V+++      S  +   P      +   D  Y  F
Sbjct: 276 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 335

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V  V+E R +  D   V++ GR+WTGA+A   GL+D +GG     +    L       ++
Sbjct: 336 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 395

Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288
           +  + P +  +  ++    +   ++ L D +  +    + G+ 
Sbjct: 396 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 438



 Score = 58.1 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSY 186
           +G +G      +++  L K G+  + V     K+  + F+E        + +  ++DS  
Sbjct: 1   MGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTEDGFTDAHREAVTRMLDSLQ 60

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
               + V++SRNI  D    L+D       +A   GLID +G +++ +  +  L   + 
Sbjct: 61  DQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIGFRDQAYARMAELVGVEK 119


>gi|215429565|ref|ZP_03427484.1| protease IV sppA [Mycobacterium tuberculosis EAS054]
 gi|289752771|ref|ZP_06512149.1| protease IV SppA [Mycobacterium tuberculosis EAS054]
 gi|289693358|gb|EFD60787.1| protease IV SppA [Mycobacterium tuberculosis EAS054]
          Length = 622

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70
            S     + P +A + + G I                     +   +  ++ DDS +A++
Sbjct: 320 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 379

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + + SPGGS  A E I+R + + ++R KPV+  +  +AAS GY +S  ++ IVA   ++ 
Sbjct: 380 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 439

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+     V+   D+LGV   +V+++      S  +   P      +   D  Y  F
Sbjct: 440 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 499

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V  V+E R +  D   V++ GR+WTGA+A   GL+D +GG     +    L       ++
Sbjct: 500 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 559

Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288
           +  + P +  +  ++    +   ++ L D +  +    + G+ 
Sbjct: 560 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 602



 Score = 96.2 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 2/197 (1%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           ++ +  I R + D     LI  +  P   A A + +  AI      KP +        + 
Sbjct: 87  RDAVAAIHRAAEDPRVAGLIARVQLPPSPAGAVQELREAIAAFSAVKPSLAWAETYPGTL 146

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169
            Y ++ A   +    +  VG +G      +++  L K G+  + V     K+  + F+E 
Sbjct: 147 SYYLASAFGEVWMQPSGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTED 206

Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
                  + +  ++DS      + V++SRNI  D    L+D       +A   GLID +G
Sbjct: 207 GFTDAHREAVTRMLDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIG 266

Query: 229 GQEEVWQSLYALGVDQS 245
            +++ +  +  L   + 
Sbjct: 267 FRDQAYARMAELVGVEK 283


>gi|215425966|ref|ZP_03423885.1| protease IV sppA [Mycobacterium tuberculosis T92]
          Length = 580

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70
            S     + P +A + + G I                     +   +  ++ DDS +A++
Sbjct: 278 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 337

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + + SPGGS  A E I+R + + ++R KPV+  +  +AAS GY +S  ++ IVA   ++ 
Sbjct: 338 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 397

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+     V+   D+LGV   +V+++      S  +   P      +   D  Y  F
Sbjct: 398 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 457

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V  V+E R +  D   V++ GR+WTGA+A   GL+D +GG     +    L       ++
Sbjct: 458 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 517

Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288
           +  + P +  +  ++    +   ++ L D +  +    + G+ 
Sbjct: 518 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 560



 Score = 96.2 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 2/197 (1%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           ++ +  I R + D     LI  +  P   A A + +  AI      KP +        + 
Sbjct: 45  RDAVAAIHRAAEDPRVAGLIARVQLPPSPAGAVQELREAIAAFSAVKPSLAWAETYPGTL 104

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169
            Y ++ A   +    +  VG +G      +++  L K G+  + V     K+  + F+E 
Sbjct: 105 SYYLASAFGEVWMQPSGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTED 164

Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
                  + +  ++DS      + V++SRNI  D    L+D       +A   GLID +G
Sbjct: 165 GFTDAHREAVTRMLDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIG 224

Query: 229 GQEEVWQSLYALGVDQS 245
            +++ +  +  L   + 
Sbjct: 225 FRDQAYARMAELVGVEK 241


>gi|15607864|ref|NP_215238.1| protease IV SppA [Mycobacterium tuberculosis H37Rv]
 gi|31791910|ref|NP_854403.1| protease IV SppA [Mycobacterium bovis AF2122/97]
 gi|121636646|ref|YP_976869.1| putative protease IV sppA (endopeptidase IV) [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|148660499|ref|YP_001282022.1| hypothetical protein MRA_0732 [Mycobacterium tuberculosis H37Ra]
 gi|148821929|ref|YP_001286683.1| protease IV sppA [Mycobacterium tuberculosis F11]
 gi|224989118|ref|YP_002643805.1| putative protease IV [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253797667|ref|YP_003030668.1| protease IV sppA [Mycobacterium tuberculosis KZN 1435]
 gi|254231044|ref|ZP_04924371.1| protease IV sppA [Mycobacterium tuberculosis C]
 gi|254363670|ref|ZP_04979716.1| protease IV sppA [Mycobacterium tuberculosis str. Haarlem]
 gi|289442125|ref|ZP_06431869.1| signal peptide peptidase SppA, 67K type [Mycobacterium tuberculosis
           T46]
 gi|289552981|ref|ZP_06442191.1| protease IV sppA [Mycobacterium tuberculosis KZN 605]
 gi|289573332|ref|ZP_06453559.1| protease IV sppA [Mycobacterium tuberculosis K85]
 gi|289744448|ref|ZP_06503826.1| protease IV sppA [Mycobacterium tuberculosis 02_1987]
 gi|298524215|ref|ZP_07011624.1| protease IV [Mycobacterium tuberculosis 94_M4241A]
 gi|308371742|ref|ZP_07426068.2| protease IV sppA [Mycobacterium tuberculosis SUMu004]
 gi|1806192|emb|CAB06448.1| POSSIBLE PROTEASE IV SPPA (ENDOPEPTIDASE IV) (SIGNAL PEPTIDE
           PEPTIDASE) [Mycobacterium tuberculosis H37Rv]
 gi|31617497|emb|CAD93607.1| POSSIBLE PROTEASE IV SPPA (ENDOPEPTIDASE IV) (SIGNAL PEPTIDE
           PEPTIDASE) [Mycobacterium bovis AF2122/97]
 gi|121492293|emb|CAL70760.1| Possible protease IV sppA (endopeptidase IV) [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124600103|gb|EAY59113.1| protease IV sppA [Mycobacterium tuberculosis C]
 gi|134149184|gb|EBA41229.1| protease IV sppA [Mycobacterium tuberculosis str. Haarlem]
 gi|148504651|gb|ABQ72460.1| putative protease IV [Mycobacterium tuberculosis H37Ra]
 gi|148720456|gb|ABR05081.1| protease IV sppA [Mycobacterium tuberculosis F11]
 gi|224772231|dbj|BAH25037.1| putative protease IV [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319170|gb|ACT23773.1| protease IV sppA [Mycobacterium tuberculosis KZN 1435]
 gi|289415044|gb|EFD12284.1| signal peptide peptidase SppA, 67K type [Mycobacterium tuberculosis
           T46]
 gi|289437613|gb|EFD20106.1| protease IV sppA [Mycobacterium tuberculosis KZN 605]
 gi|289537763|gb|EFD42341.1| protease IV sppA [Mycobacterium tuberculosis K85]
 gi|289684976|gb|EFD52464.1| protease IV sppA [Mycobacterium tuberculosis 02_1987]
 gi|298494009|gb|EFI29303.1| protease IV [Mycobacterium tuberculosis 94_M4241A]
 gi|308335656|gb|EFP24507.1| protease IV sppA [Mycobacterium tuberculosis SUMu004]
 gi|326905054|gb|EGE51987.1| protease IV sppA [Mycobacterium tuberculosis W-148]
 gi|328457448|gb|AEB02871.1| protease IV sppA [Mycobacterium tuberculosis KZN 4207]
          Length = 623

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70
            S     + P +A + + G I                     +   +  ++ DDS +A++
Sbjct: 321 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 380

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + + SPGGS  A E I+R + + ++R KPV+  +  +AAS GY +S  ++ IVA   ++ 
Sbjct: 381 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 440

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+     V+   D+LGV   +V+++      S  +   P      +   D  Y  F
Sbjct: 441 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 500

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V  V+E R +  D   V++ GR+WTGA+A   GL+D +GG     +    L       ++
Sbjct: 501 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 560

Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288
           +  + P +  +  ++    +   ++ L D +  +    + G+ 
Sbjct: 561 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 603



 Score = 96.2 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 2/197 (1%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           ++ +  I R + D     LI  +  P   A A + +  AI      KP +        + 
Sbjct: 88  RDAVAAIHRAAEDPRVAGLIARVQLPPSPAGAVQELREAIAAFSAVKPSLAWAETYPGTL 147

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169
            Y ++ A   +    +  VG +G      +++  L K G+  + V     K+  + F+E 
Sbjct: 148 SYYLASAFGEVWMQPSGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTED 207

Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
                  + +  ++DS      + V++SRNI  D    L+D       +A   GLID +G
Sbjct: 208 GFTDAHREAVTRMLDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIG 267

Query: 229 GQEEVWQSLYALGVDQS 245
            +++ +  +  L   + 
Sbjct: 268 FRDQAYARMAELVGVEK 284


>gi|167968282|ref|ZP_02550559.1| protease IV sppA [Mycobacterium tuberculosis H37Ra]
 gi|215402507|ref|ZP_03414688.1| protease IV sppA [Mycobacterium tuberculosis 02_1987]
 gi|215410281|ref|ZP_03419089.1| protease IV sppA [Mycobacterium tuberculosis 94_M4241A]
 gi|254549685|ref|ZP_05140132.1| protease IV sppA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260199734|ref|ZP_05767225.1| protease IV sppA [Mycobacterium tuberculosis T46]
 gi|260203895|ref|ZP_05771386.1| protease IV sppA [Mycobacterium tuberculosis K85]
 gi|294996206|ref|ZP_06801897.1| protease IV sppA [Mycobacterium tuberculosis 210]
 gi|297633223|ref|ZP_06951003.1| protease IV sppA [Mycobacterium tuberculosis KZN 4207]
 gi|297730203|ref|ZP_06959321.1| protease IV sppA [Mycobacterium tuberculosis KZN R506]
 gi|306796479|ref|ZP_07434781.1| protease IV sppA [Mycobacterium tuberculosis SUMu006]
 gi|313657530|ref|ZP_07814410.1| protease IV sppA [Mycobacterium tuberculosis KZN V2475]
 gi|308343138|gb|EFP31989.1| protease IV sppA [Mycobacterium tuberculosis SUMu006]
 gi|323720851|gb|EGB29918.1| protease IV sppA [Mycobacterium tuberculosis CDC1551A]
          Length = 600

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70
            S     + P +A + + G I                     +   +  ++ DDS +A++
Sbjct: 298 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 357

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + + SPGGS  A E I+R + + ++R KPV+  +  +AAS GY +S  ++ IVA   ++ 
Sbjct: 358 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 417

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+     V+   D+LGV   +V+++      S  +   P      +   D  Y  F
Sbjct: 418 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 477

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V  V+E R +  D   V++ GR+WTGA+A   GL+D +GG     +    L       ++
Sbjct: 478 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 537

Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288
           +  + P +  +  ++    +   ++ L D +  +    + G+ 
Sbjct: 538 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 580



 Score = 96.2 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 2/197 (1%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           ++ +  I R + D     LI  +  P   A A + +  AI      KP +        + 
Sbjct: 65  RDAVAAIHRAAEDPRVAGLIARVQLPPSPAGAVQELREAIAAFSAVKPSLAWAETYPGTL 124

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169
            Y ++ A   +    +  VG +G      +++  L K G+  + V     K+  + F+E 
Sbjct: 125 SYYLASAFGEVWMQPSGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTED 184

Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
                  + +  ++DS      + V++SRNI  D    L+D       +A   GLID +G
Sbjct: 185 GFTDAHREAVTRMLDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIG 244

Query: 229 GQEEVWQSLYALGVDQS 245
            +++ +  +  L   + 
Sbjct: 245 FRDQAYARMAELVGVEK 261


>gi|330900160|gb|EGH31579.1| peptidase S49, SppA [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 332

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 123/291 (42%), Gaps = 18/291 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61
             K        V + V    +       S + A I ++G I D     ++ ++  +++  
Sbjct: 49  FFKLLTFAFLFVAVIVPMLDFEGGTSRRSSYTALIDVQGVIADKEAASAENIVTALQKAF 108

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118
            D+    +I+ ++SPGGS      ++  I++++  KP I     +    AS  Y I+ A+
Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRATKPDIKVYAVITDLGASGAYYIASAA 168

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I A + SLVGSIGV          +DKLGV  ++  S   KA   PF        Q  
Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Q V+D+++  F+  V + R           L  G IWTG +A  +GL+D +G    V + 
Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKEHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +         + I ++   ++ +    K L  S  + + I ++       L
Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 331


>gi|39933145|ref|NP_945421.1| signal peptide peptidase SppA 36K type [Rhodopseudomonas palustris
           CGA009]
 gi|192288501|ref|YP_001989106.1| signal peptide peptidase SppA, 36K type [Rhodopseudomonas palustris
           TIE-1]
 gi|39652770|emb|CAE25509.1| putative protease IV [Rhodopseudomonas palustris CGA009]
 gi|192282250|gb|ACE98630.1| signal peptide peptidase SppA, 36K type [Rhodopseudomonas palustris
           TIE-1]
          Length = 326

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 88/285 (30%), Positives = 152/285 (53%), Gaps = 15/285 (5%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
           +          ++  +ARI I G I  + E ++ ++R+ +  S +A+IV ++SPGG+   
Sbjct: 39  MVSPAGRGALTSTGSIARIKIEGLIRSNDERVQALDRLGK-SSYSAVIVHINSPGGTTAG 97

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            E +  A+ ++K +KP++  V  +AAS GY+ + AS  IVA +TSLVGSIGVLFQYP V 
Sbjct: 98  SEELHDALARLKAKKPMVVVVEGLAASGGYIAALASEHIVAQQTSLVGSIGVLFQYPNVS 157

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L  +GV ++ VKSSP+KA P+ F   +P+A   ++ +V  SY WF  +V +SR +  D
Sbjct: 158 ELLKTVGVKVEEVKSSPLKAAPNGFEPTSPEARAAIEALVKDSYAWFRGMVQQSRKMTDD 217

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           +  V++DGR++TG +A  + LID +G +      L      ++   ++D+     +    
Sbjct: 218 QLNVVADGRVFTGRQAVGLKLIDELGDERTAIAWLEKAKNVKAGLPVRDYKLAPQFGDLT 277

Query: 263 LKNLSISSLLE--------------DTIPLMKQTKVQGLWAVWNP 293
               + S   +                +  +++  + G+ A+W P
Sbjct: 278 FLRAAASVAFDAAGLGVIARRVEQTGAMQSVERLGLDGMLALWAP 322


>gi|71737114|ref|YP_273878.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557667|gb|AAZ36878.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320325305|gb|EFW81372.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327710|gb|EFW83718.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 332

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 18/291 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61
             K        V + V    +       S H A I ++G I D     ++ ++  +++  
Sbjct: 49  FFKLLTFAFLFVAVVVPMLDFEGGTSRRSSHTALIDVQGVIADKESASAENIVTALQKAF 108

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118
            D+    +I+ ++SPGGS      ++  I++++  KP I     +    AS  Y I+ A+
Sbjct: 109 EDEKTRGVILRINSPGGSPVQSGYVYDEIRRLRAAKPDIKVYAVITDLGASGAYYIASAA 168

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I A + SLVGSIGV          +DKLGV  ++  S   KA   PF        Q  
Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Q V+D+++  F+  V + R           L  G IWTG +A  +GL+D +G    V + 
Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKDHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +         + I ++   ++ +    K L  S  + + I ++       L
Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 331


>gi|213969775|ref|ZP_03397910.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           tomato T1]
 gi|301382851|ref|ZP_07231269.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           tomato Max13]
 gi|302062843|ref|ZP_07254384.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           tomato K40]
 gi|302131351|ref|ZP_07257341.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213925583|gb|EEB59143.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           tomato T1]
          Length = 332

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 121/291 (41%), Gaps = 18/291 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61
             K   V    V + +    +       S H A I ++G I D     ++ +   +    
Sbjct: 49  FFKLLTVAFLFVAIVLPMLDFEGGASRRSSHTALIDVQGVIADKESASAENITTALRDAF 108

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118
            D+    +I+ ++SPGGS      ++  I++++  KP I     +    AS  Y I+ A+
Sbjct: 109 GDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAEKPNIKVYAVITDLGASGAYYIASAA 168

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I A + SLVGSIGV          ++KLGV  ++  S   KA   PF        Q  
Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMEKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Q V+D+++  F+  V + R           +  G +WTG +A  +GL+D +G    V + 
Sbjct: 229 QSVLDTTHRQFIASVKQGRGDRLKDKDHPEMFSGLVWTGEQAVALGLVDGLGSASYVARE 288

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +         + I ++   ++ +    K L  S  + + I ++       L
Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGAS--IAERIAMLVGFGGPSL 331


>gi|49083774|gb|AAT51140.1| PA2973 [synthetic construct]
          Length = 327

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 131/298 (43%), Gaps = 24/298 (8%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSS------HVEDNSPHVARIAIRGQIEDSQ-----ELI 54
           ++    +  L+ + L VV  ++S           +  H A I ++G I D +      ++
Sbjct: 36  RRWGIFFKSLTFIYLFVVLLAFSPFGSLEKSASRSGSHTALIEVKGMIADDEPASADNIV 95

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV---HEMAASAG 111
             +    +D+    +++ ++SPGGS      I+  I++++   P +       ++ AS  
Sbjct: 96  TALRAAFKDEGTKGIVLRINSPGGSPVQSGYIYDEIRRLRGEHPNVKVYAVISDLGASGA 155

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I A + SLVGSIGV          ++KLGV  +   S   K+   PF    
Sbjct: 156 YYIASAADQIYADKASLVGSIGVTAASFGFVGTMEKLGVERRVYTSGEHKSFLDPFQPQK 215

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--LVLSDGRIWTGAEAKKVGLIDVVGG 229
           P+  Q  Q V+D+++  F+  V + R           L  G +W+G +A ++GLID +G 
Sbjct: 216 PEETQFWQQVLDTTHKQFIDSVEKGRGDRLKVEGHPELFSGLVWSGEQALQLGLIDGLGN 275

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
              V + +         +KI+D+   ++ +    K    S  + + + L    +   L
Sbjct: 276 ASYVAREVVK------EKKIEDYTVQESPFDRFAKKFGAS--VAERLALWMGWQGPVL 325


>gi|321312489|ref|YP_004204776.1| signal peptide peptidase [Bacillus subtilis BSn5]
 gi|320018763|gb|ADV93749.1| signal peptide peptidase [Bacillus subtilis BSn5]
          Length = 335

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 145/319 (45%), Gaps = 42/319 (13%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP------------------------HVARI 41
           K+     + L +  ++++     S  E                             +A +
Sbjct: 4   KRWIALVIALGIFGVSIIVSISMSFFESVKGAQTDLTSLTDESQEKTLENGSLSSKIAVL 63

Query: 42  AIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
            + G I+D+              +  ++ +ER   D +   +++ ++SPGG  Y    I 
Sbjct: 64  EVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIH 123

Query: 88  RAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           + ++++K   +KP+   +  MAAS GY IS A++ I A   +L GS+GV+ +        
Sbjct: 124 KKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLA 183

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           DKLG+S +++KS   K   SP  E+  +   +MQ +VD+SY  FV ++S+ R +   +  
Sbjct: 184 DKLGISFETIKSGAHKDIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMSKAEVK 243

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            ++DGR++ G +AKK+ L+D +G  ++   ++     D     +  +   +++    L +
Sbjct: 244 KIADGRVYDGRQAKKLNLVDELGFYDDTITAMKKDHKDLKNASVISYE--ESFGLGSLFS 301

Query: 266 LSISSLLEDTIPLMKQTKV 284
           +  + + +  I  +   ++
Sbjct: 302 MGANKMFKSEIDFLNMREI 320


>gi|301063986|ref|ZP_07204451.1| signal peptide peptidase SppA, 36K type [delta proteobacterium
           NaphS2]
 gi|300441897|gb|EFK06197.1| signal peptide peptidase SppA, 36K type [delta proteobacterium
           NaphS2]
          Length = 294

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 67/272 (24%), Positives = 133/272 (48%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVS 72
           V+L  + L   +F   S        +  +AI G I   +++  ++ + +RD++  A+I+ 
Sbjct: 12  VLLGGILLLTFHFFGPSTTALFKEKIGVVAINGTISSGKKISSQLAKFARDENIRAIILR 71

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           ++SPGG   A + I+R +QK   +KPVI  +  +AAS GY ++  +  IV+   ++ GSI
Sbjct: 72  INSPGGGVGATQEIYREVQKTIRQKPVIVSMGSVAASGGYYVAAPATKIVSNPGTITGSI 131

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GV  Q+  ++  L K+GV  + VKS   K   SP  ++  +  ++++ +++     FV  
Sbjct: 132 GVFIQFVRLEKLLSKIGVDFEIVKSGEFKDMGSPDRKLTRRDREIIEALIEDLQGQFVSA 191

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           V+  R++   +    +DGRI++GA AK++GL+D +G  ++  +    +       ++   
Sbjct: 192 VASGRHLSVQEVQKFADGRIFSGARAKQLGLVDFMGNFQDAVEITKKVVGITGEVELVHP 251

Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
               +         S    ++      K   +
Sbjct: 252 KKTSSELLDLFLESSARHFMKAFGDGAKGNVL 283


>gi|42522622|ref|NP_968002.1| signal peptide peptidase [Bdellovibrio bacteriovorus HD100]
 gi|39575154|emb|CAE78995.1| signal peptide peptidase [Bdellovibrio bacteriovorus HD100]
          Length = 322

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 119/266 (44%), Gaps = 5/266 (1%)

Query: 2   EFVLKKIKTRYVMLSLVTLTVV---YFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIE 58
            F  K I    V + L  L  +   +F            +  + + G I + ++ I+ ++
Sbjct: 4   SFFKKLIIIFLVFVGLGALLKMSGDFFGSEDKRVTAKNTILHLEMNGVILNGKKFIKNLK 63

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISC 116
           +   DD   A+++S++SPGGS    + +F  I++V++  +KPV+     + AS  Y  + 
Sbjct: 64  KYRDDDKVKAILISINSPGGSVGPSQELFAEIKRVRDEIKKPVVCVSTGVMASGAYYAAV 123

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
           A + IV A  +LVGSIGV+ ++  ++   D   +S  S+ S   K   + +  +      
Sbjct: 124 ACDKIVVAPGALVGSIGVIMEFANLEKLYDWAKISRYSITSGKFKDSGAEYRPMREDERS 183

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           + Q ++D  Y  F   V+  R +  +     +DGR++TGA A KVG  D  G  ++  + 
Sbjct: 184 LFQSMIDEVYAQFKGTVATERKLKEEVVAEYADGRVFTGATAVKVGFADQEGYFDDAVKL 243

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCD 262
              +        + +    K   F  
Sbjct: 244 AAEIAKLGDNYDVFEVPKKKVSIFDL 269


>gi|218890829|ref|YP_002439693.1| putative peptidase [Pseudomonas aeruginosa LESB58]
 gi|218771052|emb|CAW26817.1| probable peptidase [Pseudomonas aeruginosa LESB58]
          Length = 326

 Score =  148 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 67/280 (23%), Positives = 125/280 (44%), Gaps = 22/280 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSS------HVEDNSPHVARIAIRGQIEDSQ-----ELI 54
           ++    +  L+ + L VV  ++S           +  H A I ++G I D +      ++
Sbjct: 36  RRWGIFFKSLTFIYLFVVLLAFSPFGSLEKSASRSGSHTALIEVKGMIADDEPASADNIV 95

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV---HEMAASAG 111
             +    +D+    +++ ++SPGGS      I+  I++++   P +       ++ AS  
Sbjct: 96  TALRAAFKDEGTKGIVLRINSPGGSPVQSGYIYDEIRRLRGEHPNVKVYAVISDLGASGA 155

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I A + SLVGSIGV          ++KLGV  +   S   K+   PF    
Sbjct: 156 YYIASAADQIYADKASLVGSIGVTAASFGFVGTMEKLGVERRVYTSGEHKSFLDPFQPQK 215

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--LVLSDGRIWTGAEAKKVGLIDVVGG 229
           P+  Q  Q V+D+++  F+  V + R           L  G +W+G +A ++GLID +G 
Sbjct: 216 PEETQFWQQVLDTTHKQFIDSVKKGRGDRLKVEGHPELFSGLVWSGEQALQLGLIDGLGN 275

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
              V + +         +KI+D+   ++ +    K    S
Sbjct: 276 ASYVAREVVK------EKKIEDYTVQESPFDRFAKKFGAS 309


>gi|70729174|ref|YP_258910.1| signal peptide peptidase SppA, 36K type [Pseudomonas fluorescens
           Pf-5]
 gi|68343473|gb|AAY91079.1| signal peptide peptidase SppA, 36K type [Pseudomonas fluorescens
           Pf-5]
          Length = 329

 Score =  148 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 62/283 (21%), Positives = 121/283 (42%), Gaps = 16/283 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIE 58
           +  K+ T   + + + L     +   +      + A I + G I D     +  ++  + 
Sbjct: 43  IFFKLLTFVYLFAALALFTPLMTMEKNATRGGSYTAVIDVTGVIADKESASADNIVGSLR 102

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAGYLIS 115
               D     +++ ++SPGGS      ++  I++   +     V   + ++ AS  Y I+
Sbjct: 103 TAFDDPKVKGIVLRINSPGGSPVQSGYVYDEIRRLRALHKDTKVYAVISDLGASGAYYIA 162

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I A + SLVGSIGV          ++KLGV  ++  S   K+   PF    P+  
Sbjct: 163 SAADEIYADKASLVGSIGVTAAGYGFVGTMEKLGVERRTYTSGEHKSFLDPFQPQKPEET 222

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
           Q  Q V+D+++  F+  V + R           L  G +W+G +A ++GLID +G    V
Sbjct: 223 QFWQGVLDTTHRQFIASVKQGRGDRLKDKEHPELFSGLVWSGEQALQLGLIDGLGNTSSV 282

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
            + +         +++ D+   ++ +    K L  S   +  +
Sbjct: 283 ARDVIG------EKEVVDFTVQESPFDRFSKKLGASVAEQIAM 319


>gi|330966254|gb|EGH66514.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 332

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 121/291 (41%), Gaps = 18/291 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61
             K   V    V + +    +       S H A I ++G I D     ++ +   +    
Sbjct: 49  FFKLLTVAFLFVAIVLPMLDFEGGASRRSSHTALIDVQGVIADKESASAENITTALRDAF 108

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118
            D+    +I+ ++SPGGS      ++  I++++  KP I     +    AS  Y I+ A+
Sbjct: 109 GDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAEKPNIKVYAVITDLGASGAYYIASAA 168

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I A + SLVGSIGV          ++KLGV  ++  S   KA   PF        Q  
Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMEKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Q V+D+++  F+  V + R           +  G IWTG +A  +GL+D +G    V + 
Sbjct: 229 QSVLDTTHRQFIASVKQGRGDRLKDMDHPEMFSGLIWTGEQAVALGLVDGLGSASYVARE 288

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +         + I ++   ++ +    K L  S  + + I ++       L
Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFGGPSL 331


>gi|163783733|ref|ZP_02178719.1| proteinase IV [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880979|gb|EDP74497.1| proteinase IV [Hydrogenivirga sp. 128-5-R1-1]
          Length = 264

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 75/251 (29%), Positives = 132/251 (52%), Gaps = 5/251 (1%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
            FS           VA I I+G I +    + +IER+ +D S  AL++ + SPGGS  A 
Sbjct: 1   MFSALISRVPVGERVAIINIKGVIVNPIPTVRKIERLRKDKSVKALVIRVDSPGGSVGAS 60

Query: 84  EAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           + I+RAI++ K   KPV+  +  +AAS GY +S  ++ I+A   ++ GSIGV+ Q+   +
Sbjct: 61  QEIYRAIERFKAEGKPVVVSMGNVAASGGYYVSAPADYILANPGTITGSIGVIIQHVAYR 120

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY- 201
             ++K+GV   ++K+   K   +PF E+ P+  + +Q+ +  +Y  F++ + + R     
Sbjct: 121 ELMEKIGVKATAIKTGKFKDTLNPFRELTPEEKEYLQETIGEAYEQFLKAILKYRGNKIG 180

Query: 202 -DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
            +K   ++DGR+ TG  AK++GL+D +GG E+  Q    +      R+   + P +    
Sbjct: 181 EEKLRSVADGRVLTGERAKELGLVDELGGIEDAVQKAKEIAGVPKAREF--FVPEEKSLL 238

Query: 261 CDLKNLSISSL 271
             +    I  L
Sbjct: 239 QKVLGGEIEEL 249


>gi|15840132|ref|NP_335169.1| protease IV [Mycobacterium tuberculosis CDC1551]
 gi|308370480|ref|ZP_07421698.2| protease IV sppA [Mycobacterium tuberculosis SUMu003]
 gi|308373552|ref|ZP_07432816.2| protease IV sppA [Mycobacterium tuberculosis SUMu005]
 gi|308375233|ref|ZP_07443216.2| protease IV sppA [Mycobacterium tuberculosis SUMu007]
 gi|308376479|ref|ZP_07439007.2| protease IV sppA [Mycobacterium tuberculosis SUMu008]
 gi|308377499|ref|ZP_07479407.2| protease IV sppA [Mycobacterium tuberculosis SUMu009]
 gi|308378702|ref|ZP_07483598.2| protease IV sppA [Mycobacterium tuberculosis SUMu010]
 gi|308379848|ref|ZP_07487837.2| protease IV sppA [Mycobacterium tuberculosis SUMu011]
 gi|13880283|gb|AAK44983.1| protease IV [Mycobacterium tuberculosis CDC1551]
 gi|308331869|gb|EFP20720.1| protease IV sppA [Mycobacterium tuberculosis SUMu003]
 gi|308337113|gb|EFP25964.1| protease IV sppA [Mycobacterium tuberculosis SUMu005]
 gi|308347025|gb|EFP35876.1| protease IV sppA [Mycobacterium tuberculosis SUMu007]
 gi|308350909|gb|EFP39760.1| protease IV sppA [Mycobacterium tuberculosis SUMu008]
 gi|308355599|gb|EFP44450.1| protease IV sppA [Mycobacterium tuberculosis SUMu009]
 gi|308359558|gb|EFP48409.1| protease IV sppA [Mycobacterium tuberculosis SUMu010]
 gi|308363462|gb|EFP52313.1| protease IV sppA [Mycobacterium tuberculosis SUMu011]
          Length = 539

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70
            S     + P +A + + G I                     +   +  ++ DDS +A++
Sbjct: 237 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 296

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + + SPGGS  A E I+R + + ++R KPV+  +  +AAS GY +S  ++ IVA   ++ 
Sbjct: 297 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 356

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+     V+   D+LGV   +V+++      S  +   P      +   D  Y  F
Sbjct: 357 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 416

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V  V+E R +  D   V++ GR+WTGA+A   GL+D +GG     +    L       ++
Sbjct: 417 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 476

Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288
           +  + P +  +  ++    +   ++ L D +  +    + G+ 
Sbjct: 477 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 519



 Score = 95.8 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 2/197 (1%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           ++ +  I R + D     LI  +  P   A A + +  AI      KP +        + 
Sbjct: 4   RDAVAAIHRAAEDPRVAGLIARVQLPPSPAGAVQELREAIAAFSAVKPSLAWAETYPGTL 63

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169
            Y ++ A   +    +  VG +G      +++  L K G+  + V     K+  + F+E 
Sbjct: 64  SYYLASAFGEVWMQPSGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTED 123

Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
                  + +  ++DS      + V++SRNI  D    L+D       +A   GLID +G
Sbjct: 124 GFTDAHREAVTRMLDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIG 183

Query: 229 GQEEVWQSLYALGVDQS 245
            +++ +  +  L   + 
Sbjct: 184 FRDQAYARMAELVGVEK 200


>gi|195953570|ref|YP_002121860.1| signal peptide peptidase SppA, 36K type [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195933182|gb|ACG57882.1| signal peptide peptidase SppA, 36K type [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 282

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/263 (27%), Positives = 136/263 (51%), Gaps = 5/263 (1%)

Query: 14  MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSL 73
           +L  + +  V+    + +   SP++A I +RG I +   + ++IE+  +D +  AL++ +
Sbjct: 5   VLIFLGVIFVFSLVFAFLNRRSPNIAIIRVRGVILNPLPIEKQIEKAQKDPNIKALVLRV 64

Query: 74  SSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
            SPGG+  A + I+RA++  +  +KP++  +  +AAS GY IS  +N I A   +L  SI
Sbjct: 65  DSPGGAVGAAQEIYRALEIFRAHKKPIVVSMGSLAASGGYYISAPANYIYANPGTLTASI 124

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GV+  Y   K  L K+GV    +K+   K    P+ +++      +Q ++D++Y  F+  
Sbjct: 125 GVIIDYLNYKDLLKKIGVEQGDIKTGQYKDILVPWKKLSKDDKAYLQYLIDNTYEQFINA 184

Query: 193 VSESR--NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
           +   R   I   + L ++DGR+ TG +AK+VGL+D +G  E+  +    L   +    + 
Sbjct: 185 ILAYRSNKISKQELLSIADGRVLTGVQAKEVGLVDGIGNLEDAIKKAAELAHIK--HPVV 242

Query: 251 DWNPPKNYWFCDLKNLSISSLLE 273
            +   +  +  +L   S    L+
Sbjct: 243 VFYKKEKPFLKELMESSFGGTLD 265


>gi|322436182|ref|YP_004218394.1| signal peptide peptidase SppA, 36K type [Acidobacterium sp.
           MP5ACTX9]
 gi|321163909|gb|ADW69614.1| signal peptide peptidase SppA, 36K type [Acidobacterium sp.
           MP5ACTX9]
          Length = 353

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 125/290 (43%), Gaps = 13/290 (4%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPH--------VARIAIRGQIEDSQELIERIERISRDD 64
           +++ +     + +S +  +  ++          +A I I G I D+ ++  ++ +   D 
Sbjct: 67  IVVVVGLFGAIVWSAAKSLGGDTTATTTFATSEIAVIDIDGVILDADKVDSQLRKFGDDS 126

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIV 122
           S  A+I+ ++SPGG A A + I+  + +V+  K    +  V  + AS  Y I+ A + I 
Sbjct: 127 SVKAIILHINSPGGGAAASQEIYHEVLRVRQEKHKKIVASVESVGASGAYYIASACDKIY 186

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A + S+VGSIGV+ ++      +    +    + +  +K    P  ++ PK     Q + 
Sbjct: 187 ANQASVVGSIGVIMEWTNYGDLMKWAKLKPVVIHAGELKDAGDPSRDMTPKEAAYFQALT 246

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           D+ Y  FVR V+  R+   +K   L+ G++WTG ++  +GLID +GG             
Sbjct: 247 DNMYGQFVRDVAAGRHTSTEKIQPLATGQVWTGEQSLPLGLIDKIGGFRVALMDTAHDVG 306

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
                 I   N  K      L       L  +   L+      G + +W 
Sbjct: 307 ISGEPAIVKPNSAKKGLAGLLSGEG-DDLFPNPTKLLDHA--PGFYFMWK 353


>gi|147921090|ref|YP_685099.1| putative periplasmic serine protease [uncultured methanogenic
           archaeon RC-I]
 gi|110620495|emb|CAJ35773.1| putative periplasmic serine protease [uncultured methanogenic
           archaeon RC-I]
          Length = 318

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 69/263 (26%), Positives = 124/263 (47%), Gaps = 11/263 (4%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQ-IED----------SQE 52
           V+  + T   +  +    +    +S     +   VA I + G+ I D          S  
Sbjct: 22  VMGIVLTAESIFIIAQAGMFSDIFSDITPVSPSKVAVIYVEGELITDNIPDGLGYASSNS 81

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +++ + +   D S  A+++ ++SPGG+  A + I+R I K    KP++  + ++A SA Y
Sbjct: 82  IVKHLRKAEEDKSIKAIVLRINSPGGTPVAAQEIYRQINKTSQVKPIVVSMGDIATSAAY 141

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            IS     IVA   +  GSIGV++ +       +K G+     KS P K   + +  +N 
Sbjct: 142 YISAPCTKIVANPDTFTGSIGVIWTFENKSGLYEKEGIQYYVAKSGPYKDVGADWRGLNE 201

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
                + ++++ SY  FV  V+  R++  ++   L+DGR++TG EA+ +GL+D +GG  E
Sbjct: 202 NEKAYVNNIINQSYSRFVDAVASGRHMDREEVQRLADGRVYTGYEARDLGLVDDLGGMYE 261

Query: 233 VWQSLYALGVDQSIRKIKDWNPP 255
                  LG      ++   N P
Sbjct: 262 AIDIAAELGNISGKPEVTYVNDP 284


>gi|260220733|emb|CBA28590.1| hypothetical protein Csp_A07920 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 345

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/269 (26%), Positives = 121/269 (44%), Gaps = 13/269 (4%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISR 62
           I+  ++    V + +      +  + ++PH A ++I G+I    E     ++  +     
Sbjct: 67  IRLAWLGFLCVVVWLGMQQSGTPSDISTPHTAVVSIHGEIASGNEASAEVVVASVRAAFE 126

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNI 120
           D  A A+++ ++SPGGS      I   I ++K   +KPV   V E  ASA Y I+ A++ 
Sbjct: 127 DQGAKAVVLLINSPGGSPVQAGIINDEIHRLKALHKKPVYAVVEETCASAAYYIAVAADE 186

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           I   + S+VGSIGVL         ++KLGV  + + +   K    PFS    K     Q 
Sbjct: 187 IYVDKASIVGSIGVLMDGFGFTGLMEKLGVERRLLTAGENKGFLDPFSPQTDKQRVFAQA 246

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           ++D  +  F+ +V E R     +T  +  G  WTG +A  +GL D +G  + V + +   
Sbjct: 247 MLDQIHQQFIGVVKEGRGKRLKETPDMFSGLFWTGQQAIDLGLADKLGNIDFVAREVVK- 305

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
                  +I D+   +N     +K    S
Sbjct: 306 -----AEEIVDYTRKENVAERLVKRFGAS 329


>gi|323142045|ref|ZP_08076893.1| signal peptide peptidase SppA, 36K type [Phascolarctobacterium sp.
           YIT 12067]
 gi|322413432|gb|EFY04303.1| signal peptide peptidase SppA, 36K type [Phascolarctobacterium sp.
           YIT 12067]
          Length = 318

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 80/309 (25%), Positives = 141/309 (45%), Gaps = 26/309 (8%)

Query: 4   VLKKIK-TRYVMLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQIEDSQE------- 52
           +LKKI  +  ++L++++  V     +++ E        VA I I G I    +       
Sbjct: 1   MLKKIFISAVLILAVLSFVVSLLKGNNNAEKTVTVPDRVAVINIYGTIISGADSKDNIFS 60

Query: 53  ---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVIT 101
                    ++++I   + DDS  AL++ + S GGSA A E + R +++ K +  KP++ 
Sbjct: 61  QTNGVTSGSIMKQIREAAADDSVKALVLRIDSGGGSATAAEEVGRELKRFKEKTKKPIVA 120

Query: 102 EVHEMAASAGYLI-SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160
            +    ASA Y I  CAS+ + A  T+L GSIGV   Y   +    K+G++   +KS P 
Sbjct: 121 TIGNTGASAAYWIAVCASDKVYANATTLTGSIGVYMPYMNTEELFKKIGITSNKIKSGPY 180

Query: 161 KAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKK 220
           K   S    + P+   ++Q++V+  Y  FV  V+  R +   K   L+DGR++TG +AK 
Sbjct: 181 KDIMSSDRPMTPEEQAILQNIVNEIYEQFVTTVAVGRKMEESKVKSLADGRVYTGLQAKN 240

Query: 221 VGLIDVVGGQEEVWQSLYALGVDQ---SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
           +GL+D +G   +   +   LG  +              +  W   L       +  + + 
Sbjct: 241 LGLVDEIGDYYDALAAAGELGKIKPGADGLPPVKAKEKQQPWEFLLSAHIAELIKTELVN 300

Query: 278 LMKQTKVQG 286
            +  +  Q 
Sbjct: 301 QLTGSLQQS 309


>gi|332878311|ref|ZP_08446037.1| signal peptide peptidase SppA [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332683762|gb|EGJ56633.1| signal peptide peptidase SppA [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 588

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 113/274 (41%), Gaps = 13/274 (4%)

Query: 15  LSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDD 64
           ++ + +           V      +A I   G+I            + +I  + +  +D 
Sbjct: 284 VNFIGIEDYAESVLKGKVSKEKDKIAVIYANGEIMQGEGNQGIVGHETIIAALRKAVKDK 343

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
              A+++ ++SPGG A A E + R I   + +K V   +   AAS GY I+C +  I A 
Sbjct: 344 EIKAIVLRINSPGGDALASELMHREIALARKQKKVYVSMGNYAASGGYYIACNAERIFAE 403

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             S+ GSIGV    P         GV+ ++V + P   + S F + +   V+ M + V+ 
Sbjct: 404 AGSITGSIGVFGALPNASVLAKNWGVNAETVSTHPNALQYSYFQKPSEHFVKEMTESVEQ 463

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            Y  F+  V+E R     +   ++ GR+W+G EA   GL+D +G   +           +
Sbjct: 464 IYKVFLSRVAEGRGKTVAEIDSIAQGRVWSGKEALAKGLVDELGSLNDAIAYAAKENGLE 523

Query: 245 SIRKIKDWNPP---KNYWFCDLKNLSISSLLEDT 275
           + R +   +     K         L   SL ++ 
Sbjct: 524 NYRVVSYPHYKMDMKKLLLRYGLRLKNESLQQEL 557



 Score = 92.4 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 103/273 (37%), Gaps = 24/273 (8%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTV--VYFSWSSHVEDNSPHVARIAIRGQIEDSQE------ 52
           + F +       + L  +++ +  V  S    +      V  +  +  + D  E      
Sbjct: 12  LGFFISLGVFFILFLIAISVMMSSVGASKGEEITVEDNTVLELDFQEPLTDFSEQVYFED 71

Query: 53  -------------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV 99
                        +++ IE    D     + +  +         + + RA++  K     
Sbjct: 72  FNYTSESFNGLNSVLQAIEIAKTDPHIKGISLKSAGNLSGIAFAQELRRALEDFKASGKF 131

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
           +   ++  +   Y +   ++ +  ++   V   G+  +  + K   +K G+ ++ ++   
Sbjct: 132 VLAYNDEISQLDYYLQSVADKVYISQLGNVNLRGLSSEIFFYKDLQEKTGLRMEVIRHGK 191

Query: 160 MKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGA 216
            K+   PF  ++++        +++++ ++  V  +++SRN+  +K   ++      T  
Sbjct: 192 YKSAVEPFLENKMSDNNRLQTTELLNAMWNVLVTDIAKSRNLSVEKLNEIATNVDGRTAE 251

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
            A++ GLID V  ++E  + L      + I  +
Sbjct: 252 LAQQNGLIDGVLFRDEFEKILCEKVGKKEIDDV 284


>gi|108803542|ref|YP_643479.1| signal peptide peptidase A [Rubrobacter xylanophilus DSM 9941]
 gi|108764785|gb|ABG03667.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49
           [Rubrobacter xylanophilus DSM 9941]
          Length = 340

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/281 (25%), Positives = 135/281 (48%), Gaps = 21/281 (7%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPG 77
               +  +A I + G I  +               L + + +   D+S  A++++++SPG
Sbjct: 61  SGAGTQKIAVIPVEGTIASADSSLAGPVPIATPEGLRDALRQAREDESVRAVVLAVNSPG 120

Query: 78  GSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           G   A + +  AIQ  +    KPV+  + ++AAS GY IS A++ IVA ET+L GSIGV 
Sbjct: 121 GGVTASDLMHDAIQDFRRATDKPVVVSMGDVAASGGYYISTAADRIVANETTLTGSIGVF 180

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                      K GV    +KS   KA  +P++E+     ++ Q +VD  Y  FV ++ E
Sbjct: 181 IPLLNFSEASKKYGVKQIYIKSGRFKAMGNPWNELTEDERRIFQSIVDQYYGEFVEVIVE 240

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
            R++P  +   L+DGR+++G +A+++GL+D +G  +   +    L      R ++     
Sbjct: 241 GRDLPEKRVRELADGRVYSGIQAERLGLVDRLGNLDTAVRVARDLAGVDEARVVRYV--- 297

Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQ---GLWAVWNP 293
           ++    DL    +     +++ L++   +      + ++ P
Sbjct: 298 QSPGLLDLFLARLEQPEPESLQLLRAANLDLEAKPYYLYLP 338


>gi|296332070|ref|ZP_06874534.1| signal peptide peptidase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675535|ref|YP_003867207.1| signal peptide peptidase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296150841|gb|EFG91726.1| signal peptide peptidase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413779|gb|ADM38898.1| signal peptide peptidase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 335

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 144/319 (45%), Gaps = 42/319 (13%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP------------------------HVARI 41
           K+     + L +  ++++     S  E                             +A +
Sbjct: 4   KRWIALVIALGIFGVSIIVSISMSFFESVKGAQTDLTSLTDESQEKTLENGSLSSKIAVL 63

Query: 42  AIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
            + G I+D+              +  ++ +ER   D +   +++ ++SPGG  Y    I 
Sbjct: 64  EVSGTIQDNGDSSSLLGSDGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIH 123

Query: 88  RAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           + ++++K   +KP+   +  MAAS GY IS A++ I A   +L GS+GV+ +        
Sbjct: 124 KKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLA 183

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           DKLG+S +++KS   K   SP   +  +   +MQ +VD+SY  F+ ++SE R +   +  
Sbjct: 184 DKLGISFETIKSGAHKDIMSPSRVMTKEEKNIMQSMVDNSYEGFIDVISEGRGMSKSEVK 243

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            ++DGR++ G +AKK+ L+D +G  ++   ++     D     +  +   +++    L +
Sbjct: 244 KIADGRVYDGRQAKKLNLVDELGFYDDTISAMKKDHKDLKNASVISYE--ESFGLGSLFS 301

Query: 266 LSISSLLEDTIPLMKQTKV 284
           +  + + +  I  +   ++
Sbjct: 302 MGANKMFKSEIDFLNMREI 320


>gi|316931462|ref|YP_004106444.1| signal peptide peptidase SppA, 36K type [Rhodopseudomonas palustris
           DX-1]
 gi|315599176|gb|ADU41711.1| signal peptide peptidase SppA, 36K type [Rhodopseudomonas palustris
           DX-1]
          Length = 326

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 88/287 (30%), Positives = 152/287 (52%), Gaps = 15/287 (5%)

Query: 21  TVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSA 80
            V+           +  +ARI I G I  + + +E ++R+ +  S  A+IV ++SPGG+ 
Sbjct: 37  GVMASPAGRGTLTTTGSIARIKIEGLIRSNNDRVEALDRLGK-SSYAAVIVHINSPGGTT 95

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
              E +  A+ ++K +KP++  V  +AAS GY+ + AS  I+A +TSLVGSIGVLFQYP 
Sbjct: 96  AGSEELHDALVRLKAKKPMVVVVEGLAASGGYIAALASEHIIAQQTSLVGSIGVLFQYPN 155

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           +   L  +GV ++ VKSSP+KA P+ F   +P+A   ++ +V  SY WF  +V +SR + 
Sbjct: 156 LSELLKTVGVKVEEVKSSPLKAAPNGFEPTSPEARAAIESLVRDSYAWFRGMVQQSRKMT 215

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
            D+  V++DGR++TG +A  + LID +G ++     L      +S   ++D+     +  
Sbjct: 216 DDQLNVVADGRVFTGRQAVGLKLIDQLGDEKTAIAWLETAKNVKSGLPVRDYKLAPQFGD 275

Query: 261 CDLKNLSISSLLE--------------DTIPLMKQTKVQGLWAVWNP 293
                 + S   +                +  +++  + G+ A+W P
Sbjct: 276 LTFLRAAASIAFDAAGLSAVARRVEQTGAMQSVERLGLDGMLALWAP 322


>gi|328545804|ref|YP_004305913.1| Clp protease:peptidase U7:Signal peptide peptidase, SppA 36 kDa
           type [polymorphum gilvum SL003B-26A1]
 gi|326415544|gb|ADZ72607.1| Clp protease:Peptidase U7:Signal peptide peptidase, SppA 36 kDa
           type [Polymorphum gilvum SL003B-26A1]
          Length = 334

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 98/306 (32%), Positives = 160/306 (52%), Gaps = 18/306 (5%)

Query: 5   LKKIKTRYVMLSLVTLTV------VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIE 58
           L++  T + + + V L        V  S        S H+ARI I G I D ++    I 
Sbjct: 14  LRRKLTFWRVAAFVILAAALIAALVSLSDVYGPTKRSAHIARIEIEGVILDDRDQRRMIA 73

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118
            I +  +   +IVS++SPGGS   GEA++ A++ +  +KP++ E+  +  SAGY+++ A+
Sbjct: 74  GIGKSRAVQGVIVSINSPGGSTTGGEALYEALRDLAGKKPMVAEIRTLGTSAGYMVALAA 133

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + +VA   S+ GSIGVLFQ+  ++  LD LGV++ +VKS P+KAEP  +S+ +P A  M+
Sbjct: 134 DHVVARHNSITGSIGVLFQFGNIERLLDTLGVAMDAVKSGPLKAEPDFYSQASPDARAML 193

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           + +V  SY WFVRLV+E R +       ++DG I TG  AK+ GL+D +GG++     L 
Sbjct: 194 EALVGESYDWFVRLVAERRGLDETAARRVADGSIVTGFRAKESGLVDELGGEQAAIAWLA 253

Query: 239 ALGVDQSIRKIKDWNPPKN----YWFCDLKNLSISSLLEDTIPLMKQTK--------VQG 286
                ++   +  W          +   L     + L E  +  +   K        + G
Sbjct: 254 REKGLKADLPVITWKAKTETGSVPFASKLFGSIGAGLAEGALDALSGAKGLISPSLTLDG 313

Query: 287 LWAVWN 292
           L +VW+
Sbjct: 314 LVSVWH 319


>gi|94311372|ref|YP_584582.1| peptidase S49 [Cupriavidus metallidurans CH34]
 gi|93355224|gb|ABF09313.1| Peptidase S49, periplasmic serine protease (ClpP class)
           [Cupriavidus metallidurans CH34]
          Length = 387

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 120/292 (41%), Gaps = 17/292 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIE-----DSQELIERIE 58
           KI  R++ L++V L +              +  H A + + G+I       +  +   ++
Sbjct: 101 KIFFRFLTLAIVALILYAVIDFKGDVLSSTSGRHTAMVTLDGEIAAGTTASADSINAALQ 160

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAGYLIS 115
               D SA  +I+ ++SPGGS      I   I   +K+   KP    V E+ AS GY ++
Sbjct: 161 AAFEDTSAAGVILKINSPGGSPVQAGIINDEIHRLRKLYPDKPFYVVVEEICASGGYYVA 220

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         +DK+GV  +   S   K    PFS   P+  
Sbjct: 221 AAADKIYVDKASIVGSIGVLMDGFGFTGLMDKVGVQRRLYTSGANKGMLDPFSPEVPRQK 280

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              + ++   +  F+ +V E R         L  G  W+G  A ++GL D +G  + V +
Sbjct: 281 GYAESMLKEIHQQFIDVVKEGRGDRLKNDPELFSGLFWSGERAVELGLADGLGSADYVAR 340

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
            L+          I D+   +N      K    ++       +M    V  +
Sbjct: 341 DLFK------AEDIVDYTVKENIAERMAKRFGAAAGSAAMKLMMMSATVPSV 386


>gi|240167730|ref|ZP_04746389.1| protease IV, Ssp [Mycobacterium kansasii ATCC 12478]
          Length = 596

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70
            S     + P +A + + G I                     +   +  ++ DDS +A++
Sbjct: 294 PSIPGRRSKPTIAVVTVEGPIVNGRGGPQGLPFGPSSAGGDTIAAALREVAADDSISAIV 353

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + + SPGGS  A E I+R +++ + R K V+  +  +AAS GY +S A++ IVA   ++ 
Sbjct: 354 LRVDSPGGSVTASETIWREVKRARRRGKHVVASMGAVAASGGYYVSMAADAIVANPGTIT 413

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+     V+   ++LGV  ++++++      S      P+     +   D  Y  F
Sbjct: 414 GSIGVITGKLVVRDLKERLGVGSETLRTNANADAWSIDEPFTPEQRARREAEADLFYGDF 473

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V  V+E RN+  +   V++ GR+WTGA+A + GL+D +GG     +    L        +
Sbjct: 474 VARVAEGRNLSTEAVDVVARGRVWTGADALERGLVDELGGFRTAVRRAKILAGLDEDTDV 533

Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288
           +  + P +     L     +   ++ + D +  +    + G+ 
Sbjct: 534 RLVSYPGSSLLDLLLPRMSSRPAAASVPDAVGTLLIRSIAGVV 576



 Score = 98.9 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 3/243 (1%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           ++ +  I R + D     +I  +  P   A A + +  AI      KP +        + 
Sbjct: 65  RDAVAAIHRAAEDPRVAGMIARVQLPPSPAGAVQELREAIAAFSAVKPSVAWAETYPGTL 124

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169
            Y ++ A   I    +  VG IG      +++  LDK G+  + V     K+  + F+E 
Sbjct: 125 SYYLASAFREIWLQPSGSVGLIGFASNAMFLRDALDKAGIEAEVVTRGEYKSAANLFTED 184

Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
                  + +  +++S        V+ESR I  D    L+D       EA   GLID +G
Sbjct: 185 GYTDAHREAVTRMLESLQSQVWHAVAESRRIDVDVLNELADRAPLLRDEAVASGLIDRIG 244

Query: 229 GQEEVWQSLYALGVDQSI-RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
            ++EV+  +  L   + +  +  D +      +      +  S L   +P +   + +  
Sbjct: 245 FRDEVYARIAELVGIEGVSLESVDTDEKPPRMYLARYAGTARSRLAPPVPSIPGRRSKPT 304

Query: 288 WAV 290
            AV
Sbjct: 305 IAV 307


>gi|228472447|ref|ZP_04057209.1| signal peptide peptidase SppA, 67K type [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228276132|gb|EEK14879.1| signal peptide peptidase SppA, 67K type [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 596

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 68/263 (25%), Positives = 120/263 (45%), Gaps = 9/263 (3%)

Query: 31  VEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAY 81
            E  +  +A I   G+I D          + +I+ +     D    A+++ ++SPGGS  
Sbjct: 301 KEIKNDKIAVIFCDGEIIDGQSTAGRVGHETIIKALRDAREDKRVKAIVLRVNSPGGSGL 360

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
           A E I R I   + +KPV   +  +AAS GY ISC +  I A   +L GSIGV    P +
Sbjct: 361 ASELIHREIGLTQKKKPVYASMGNVAASGGYYISCNATRIFADRQTLTGSIGVFGVVPNL 420

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
                + G+  + V + P     S F +   K  Q++ + +++ Y  FV+ V++ R++ +
Sbjct: 421 SELTQRWGIHSQQVSTHPYALSYSLFEKTPEKTRQVITEGIEAFYKKFVQRVADGRHMSW 480

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
           ++   L+ GR+WTG EA + GL+D +G   E              + +    P     F 
Sbjct: 481 EEVDALAQGRVWTGQEALEKGLVDEIGSLRETIAYAAKEQKLSEGKYLPVAYPIIEVNFM 540

Query: 262 DLKNLSISSLLEDTIPLMKQTKV 284
           D       +  +  + ++ Q ++
Sbjct: 541 DYMKQRFRASSQAELKMLLQEEI 563



 Score = 83.5 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 89/285 (31%), Gaps = 25/285 (8%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED----------------- 49
            I     + +L+ +   +             +  +     + +                 
Sbjct: 15  FITLSIALFALIGIASTFAPKEEAFVVEDNAILELNFTEPVYEYGAPMRVKDFDYEIAQE 74

Query: 50  --SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
              Q ++  I+    D     +++  +           I  A++  K     +    E A
Sbjct: 75  NTLQAILRAIKHAQEDPHIKGIVLGSTEGVEGKTHLADIRHAVEDFKKSGKFVYAFSEGA 134

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           +   Y +   ++ +       V   G+  +  Y K   +K GV ++  +    K+   PF
Sbjct: 135 SQYDYYLQSVADSVFVGTLGSVEVQGLSAEVLYYKDLQEKSGVHMEVFRHGKYKSAVEPF 194

Query: 168 SE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGAEAKKVGLI 224
            E  ++    + +   + S ++ +   VS SR +   +   ++D     T   A +  L+
Sbjct: 195 LENTMSDANREQITSYLRSLWNSYAEAVSSSRGLSLSELDQVADSLWGRTPELALQHHLV 254

Query: 225 DVVGGQEEV---WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           D +  +++     +          ++ +      +       KNL
Sbjct: 255 DRIAFRDQFEESVRKASKCKEVNDLQWVPIEKYTEKVTLDRKKNL 299


>gi|170695403|ref|ZP_02886548.1| peptidase S49 [Burkholderia graminis C4D1M]
 gi|170139594|gb|EDT07777.1| peptidase S49 [Burkholderia graminis C4D1M]
          Length = 331

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 122/288 (42%), Gaps = 16/288 (5%)

Query: 7   KIKTRYVMLSLVTLTV--VYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIER 59
           KI  R + L+LV   V  V+      +  +  H A IA+ G+I      +++++   +E 
Sbjct: 47  KIFFRLLFLALVAFVVWTVFDFSGDKLAASGRHTALIALEGEISANTRANAEDISAALES 106

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISC 116
              D     +I+   SPGGS      I+  +++++ + P I     V +M AS GY  + 
Sbjct: 107 AFEDSGTAGVILRCDSPGGSPVQAGIIYDQMRRLRAKHPSIPLYVVVGDMCASGGYYAAA 166

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
           A + I   + S+VGSIGVL         +DKLG+  +   S   K    PFS   PK  Q
Sbjct: 167 AGDKIYVDKASIVGSIGVLMDSFGFTGLMDKLGIQRRLHTSGENKGFYDPFSPETPKMDQ 226

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
             Q+++D  +  F+  V + R     +T  +  G  WTG ++ ++GL D  G    V + 
Sbjct: 227 HAQEMLDQIHAQFIEAVRQGRGKRLHETPDMFSGLFWTGQKSVELGLADGFGDANYVARE 286

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
           +           I D+   ++      +    +        L    K+
Sbjct: 287 IIK------APDIVDYTVKESITDRVARKFGAAVGNGAVHALALGGKL 328


>gi|78776884|ref|YP_393199.1| peptidase S49, SppA [Sulfurimonas denitrificans DSM 1251]
 gi|78497424|gb|ABB43964.1| Peptidase S49, SppA [Sulfurimonas denitrificans DSM 1251]
          Length = 289

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/241 (24%), Positives = 120/241 (49%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
           F +K I+  +  +  V +  + F+  S  +    ++ +I + G I +  E++++I+  + 
Sbjct: 13  FTMKFIQEHFKAMIFVLILFLIFAPQSKEDLKPNNLEQINLVGPIMEVSEVLKQIDDAAA 72

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           +     +++++ SPGG+      I  AI++ +  KPVI       AS  Y  S  ++ I+
Sbjct: 73  NHFVKGILLNVDSPGGAVAPSIEIAYAIKRARESKPVIVYASGTIASGSYYASIWADEII 132

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A   S+VGSIGV+ Q   V   + K+G+  +SV++   K   +   E        +  V+
Sbjct: 133 ANPGSMVGSIGVIMQGADVSELMSKIGIKSQSVQAGKYKKVGASDREWTEYEKNELNKVI 192

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             +Y  F + V+++R +  +K    ++  I+T ++AK+VGL+D +G   +  + L  L  
Sbjct: 193 QGTYELFTKDVADARGLDINKRDFYANAHIFTASQAKEVGLVDTLGVSFDAKKRLIELSG 252

Query: 243 D 243
            
Sbjct: 253 V 253


>gi|85859094|ref|YP_461296.1| signal peptide peptidase [Syntrophus aciditrophicus SB]
 gi|85722185|gb|ABC77128.1| signal peptide peptidase [Syntrophus aciditrophicus SB]
          Length = 309

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 124/254 (48%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPG 77
           +   V   +        +  +    I G I+DS ++++ ++   +DDS   +++ ++SPG
Sbjct: 23  LIYGVTSITGMRDGFTTADKIGIAPIDGVIKDSTDVVKNLQEFGKDDSVKGVVLRINSPG 82

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G     + I+ A+ +++ +K V+  +  +AAS GYLI+CA   I+A   +L GS+  +  
Sbjct: 83  GGVAPSQEIYEAVMELRKKKRVLVSMSSVAASGGYLIACAGEKIIANPGTLTGSVSAIMY 142

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +   +  + K+GV   ++KS   K   SP  E+  +   ++Q +VD  Y  F+ +V  +R
Sbjct: 143 FTNAEELMKKVGVKASTIKSGKYKDIGSPIREMTGEEKALLQGLVDDIYIQFLDVVVRNR 202

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
            I  +    ++DGRI+TG +A+++GL+D +G  E   + L  +        +        
Sbjct: 203 RISEEALKQIADGRIFTGKQAQQLGLVDYLGDMEYAVRMLAKMVGISGEPVVVYPQKKYE 262

Query: 258 YWFCDLKNLSISSL 271
                    + S++
Sbjct: 263 SMLDYFFERAGSTM 276


>gi|307720629|ref|YP_003891769.1| signal peptide peptidase SppA, 36K type [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978722|gb|ADN08757.1| signal peptide peptidase SppA, 36K type [Sulfurimonas autotrophica
           DSM 16294]
          Length = 289

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 127/239 (53%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64
           +  I+  +  +  V + ++ F+ +S  E  + ++ +I + G I D+ E++E+I + + ++
Sbjct: 15  MNYIQNHFKAMVFVLILILIFAPASKKEFTNYNLQKINLSGPIVDATEIVEKINKAANNN 74

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
           +   +++S++SPGG+      I  AI+++K +KPV+       AS  Y  S  ++ I+A 
Sbjct: 75  AIKGVLLSVNSPGGAVSPSIEIAYAIKRLKIKKPVVAYAKGTMASGSYYASIWADKIIAN 134

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             S++GSIGV+ Q   +   ++K+G+  + VK+   K   +P        V  +  V+  
Sbjct: 135 PGSMIGSIGVIMQGADLSGLMNKIGIKSQVVKAGLYKQIGTPDRPWKKYEVAELNKVIKG 194

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
           +Y  F + V+++R + + K    ++  I+T A+AKKVGL+D +G +      L  L   
Sbjct: 195 TYDMFTKDVADARKLDFKKRDTYANAHIFTAAQAKKVGLVDQLGVEYNAKNELEKLSGV 253


>gi|298676111|ref|YP_003727861.1| signal peptide peptidase SppA [Methanohalobium evestigatum Z-7303]
 gi|298289099|gb|ADI75065.1| signal peptide peptidase SppA, 36K type [Methanohalobium
           evestigatum Z-7303]
          Length = 366

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 70/277 (25%), Positives = 133/277 (48%), Gaps = 14/277 (5%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQ-IEDS----------QELIER 56
           I    + +   +   + +++   +   +  VA I ++G  I  S          +++   
Sbjct: 69  IFFLLITIIAASFAAIVYTFDGDLYSTNDKVAVIHVQGTMITGSIPGGIGYSTSEDVASS 128

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLIS 115
           I + S      A+++ ++SPGGS  A E I R I++ K++  PV+  + ++AASA Y +S
Sbjct: 129 IRKASDRSDVKAIVMRVNSPGGSPSAAEEISREIERAKDKGIPVVVSMGDVAASAAYYVS 188

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
             +++I+A  +++ GSIGV++ +     F D+ G+  + +KS  +K   +P+  +  +  
Sbjct: 189 APADVIMANPSTMTGSIGVIWTFQNRSEFYDEEGIEHEVIKSGELKDMGAPWRGLTEEER 248

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
                +V   Y  FV  V+E+R++       +SDGRI+TG  AK++GL+D  G   E   
Sbjct: 249 NYANKIVQEIYKNFVDHVAENRDLNRSFVNEISDGRIYTGMRAKELGLVDKFGNLYESIN 308

Query: 236 SLYALGVDQSIRKIKDWNPP--KNYWFCDLKNLSISS 270
               LG  +    +   N P      F    +  I++
Sbjct: 309 LAAELGDIRGEPDVIYLNKPSISRLLFSSKTDSGIAN 345


>gi|159026476|emb|CAO86448.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 603

 Score =  147 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/278 (24%), Positives = 128/278 (46%), Gaps = 15/278 (5%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLS 74
           Y S      D++  +A +   G I             +L + + ++   +   A+++ ++
Sbjct: 303 YASSLDEGGDSNNQIAIVYAEGTIVEGQGDRGEIGGDKLAKELRKLQGKEEVKAVVLRIN 362

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGGSA A E I R I+++   KPVI  + ++AAS GY I+     I A   ++ GSIGV
Sbjct: 363 SPGGSATASEVILREIKRLDATKPVIISMGDVAASGGYWIAMGGQRIFADNDTITGSIGV 422

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
                 ++   +  G+   +VK+  +    +     NP+ +++ Q  V+  Y  F+  V+
Sbjct: 423 FGLLLNIQKIANNNGIDWDTVKTGQLADISTITRPKNPQELEIYQAAVNRFYDLFIETVA 482

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
             R +  DK   ++ GR+WTG +A K+GL+D +GG E   Q             ++++  
Sbjct: 483 RGRKLSPDKVRTVAQGRVWTGKDAVKIGLVDQIGGLEVAVQYAAKTAELGDDWSLQEYPR 542

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
            +++    L     S+ L+  +P + +     L   W 
Sbjct: 543 SQSWQEELL-----SNFLQTYLPPLTKNNHP-LTQEWQ 574



 Score = 80.0 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 83/204 (40%), Gaps = 5/204 (2%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGE--AIFRAIQKVKNRKPVITEVHEM 106
           + +++I  IE+ + DD+   L++      G         + +A+ K +     I      
Sbjct: 82  NLRQVIAAIEKAALDDNIVGLLLYGRDNIGEYGYATLTEVRQALAKFRQSGKKIIAYDME 141

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                Y ++  +  ++      +   G+  Q  +    L+K GV ++ VK    K    P
Sbjct: 142 WTEKEYYLASVAETVIINPVGRMEINGLSSQQTFFADALEKYGVGVQVVKVGSFKGAVEP 201

Query: 167 F--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGL 223
           +   +++ +  Q +Q ++D+ +  +   V++SRN+   +   +SD   I     AKK G 
Sbjct: 202 YTRQDLSVQNRQQLQTLLDTIWSNYSSTVAKSRNLTPQQVQTISDTQGILEATTAKKAGF 261

Query: 224 IDVVGGQEEVWQSLYALGVDQSIR 247
           +D V   + V      L  +   +
Sbjct: 262 VDEVAYLDRVIVLAKDLTGEAKNK 285


>gi|162148930|ref|YP_001603391.1| peptidase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545314|ref|YP_002277543.1| signal peptide peptidase SppA, 36K type [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787507|emb|CAP57103.1| putative peptidase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532991|gb|ACI52928.1| signal peptide peptidase SppA, 36K type [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 313

 Score =  147 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 86/286 (30%), Positives = 150/286 (52%), Gaps = 6/286 (2%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISRDDSATALIV 71
            +L+LV +       S        H+ R+ + G I  D+++LI+ +++ ++ DS   +I+
Sbjct: 29  FVLALVGVGGHSLMRSGGFAS-RDHLVRVRVAGIIGSDNRKLIDLVDKAAKTDSVRGMIL 87

Query: 72  SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
           ++ SPGGS   GEA+  A+ +   RKPV   +  +AASAGY+IS  +  + A +++L GS
Sbjct: 88  AVDSPGGSVSGGEALHDAVARFAARKPVAVTMGGLAASAGYMISVPAQRVFAVQSTLTGS 147

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IGV+ + P V   LD++GV +  + S PMK +PS    ++P+  QM+Q VV   +  FV 
Sbjct: 148 IGVIMEAPDVSGLLDRVGVKVDQLVSGPMKGQPSGTQPLSPEGRQMLQGVVADLFDQFVT 207

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
           +V++ R++P ++   L+DGR +TG +A  +GLID +G + +    L +         + D
Sbjct: 208 MVADGRHMPVERVRTLADGRPYTGRQALSLGLIDQIGDERDAKAWLTSTRHLSGTIPVVD 267

Query: 252 WN-PPKNYWFCDLKNLSISSLLEDTIP---LMKQTKVQGLWAVWNP 293
                   W   +    +  +  D      L +   + G  A+W P
Sbjct: 268 LKVTTGQGWMHRITRSMLGVVFGDEWAGSVLSQGVALDGAVAIWKP 313


>gi|89900513|ref|YP_522984.1| peptidase S49 [Rhodoferax ferrireducens T118]
 gi|89345250|gb|ABD69453.1| peptidase S49 [Rhodoferax ferrireducens T118]
          Length = 356

 Score =  147 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/284 (23%), Positives = 122/284 (42%), Gaps = 14/284 (4%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERIS 61
            I+  ++   ++   +V     +      PH A + I+G+I    +     ++  +    
Sbjct: 77  FIRLAWLAFFIIVAWLVISQNGASRAALKPHTAVVEIKGEIASGADASADAIVASLRDAF 136

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASN 119
            D  A A+++ ++SPGGS      I   + ++K +  KPV   V E  ASA Y I+ A++
Sbjct: 137 EDAGAQAVVLLINSPGGSPVQAGIINDELHRLKAKHNKPVYAVVEETCASAAYYIAVAAD 196

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179
            I   + S+VGSIGVL         ++KLGV  + + +   K    PFS    K     Q
Sbjct: 197 KIYVDKASIVGSIGVLMDGFGFTGLMEKLGVERRLMTAGENKGFLDPFSPQTEKQRVFAQ 256

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
            +++  +  F+ +V   R     +T     G  W+G +A ++GL D  G  + V + +  
Sbjct: 257 AMLNQIHQQFIDVVKAGRGTRLKETPETFSGLFWSGQQAIELGLADQFGNLDFVAREVVK 316

Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
                    I D+   +N     +K    S + +  +  ++ T 
Sbjct: 317 ------AEDIIDYTRRENVAERLVKRFGAS-IGQGAVRAIQSTP 353


>gi|242277502|ref|YP_002989631.1| signal peptide peptidase SppA, 36K type [Desulfovibrio salexigens
           DSM 2638]
 gi|242120396|gb|ACS78092.1| signal peptide peptidase SppA, 36K type [Desulfovibrio salexigens
           DSM 2638]
          Length = 322

 Score =  147 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/319 (24%), Positives = 141/319 (44%), Gaps = 30/319 (9%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP------------HVARIAIRGQIEDS-- 50
           +KKI     +L+ + L       +   +   P             V  ++I G I D   
Sbjct: 1   MKKILLTIFILTSIALCGCQPKMNIFPDGTDPLLEKKLQGEGDYKVLVVSIDGTISDEGK 60

Query: 51  -----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-- 97
                      QE+  R++  + DD   AL++ ++SPGGS  A + ++  I + K +   
Sbjct: 61  RGLLGSSPSLVQEVSSRLKLAAEDDKIKALVLKINSPGGSVTASDILYNEIVRFKEKTGA 120

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
            VI  + ++AAS GY +S  ++ I+A  T+L GSIGV+F  P V+  +DK+GVS++  KS
Sbjct: 121 KVIVNMMDVAASGGYYVSLPADHIMAHPTTLTGSIGVIFIRPKVEGLMDKIGVSVEVSKS 180

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
              K    PF    P+  +++ D++      F  LV + R+I  D+   +   ++++   
Sbjct: 181 GRNKDMGFPFKPDTPEQKKIIDDIIKDYADRFQGLVKKHRSISDDQLNTIFTAQVFSAQG 240

Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN---PPKNYWFCDLKNLSISSLLED 274
           AKK GL+D +G   +  ++   L       ++  +     P +  +    + + S  L +
Sbjct: 241 AKKAGLVDSLGYLPDAVKTACKLAGISEDSQVVTYKRKSYPNDTLYNSASSQAFSPALIN 300

Query: 275 TIPLMKQTKVQGLWAVWNP 293
                      G   +W P
Sbjct: 301 IDAGNLMPPKAGFHYLWLP 319


>gi|28870992|ref|NP_793611.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28854241|gb|AAO57306.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|331019162|gb|EGH99218.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 332

 Score =  147 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 120/291 (41%), Gaps = 18/291 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61
             K   V    V + +    +       S H A I ++G I D     ++ +   +    
Sbjct: 49  FFKLLTVAFLFVAIVLPMLDFEGGASRRSSHTALIDVQGVIADKESASAENITTALRDAF 108

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118
            D+    +I+ ++SPGGS      ++  I++++  KP I     +    AS  Y I+ A+
Sbjct: 109 GDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAEKPNIKVYAVITDLGASGAYYIASAA 168

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I A + SLVGSIGV          ++KLGV  ++  S   KA   PF        Q  
Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMEKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Q V+D+++  F+  V   R           +  G +WTG +A  +GL+D +G    V + 
Sbjct: 229 QSVLDTTHRQFIASVKLGRGDRLKDKDHPEMFSGLVWTGEQAVALGLVDGLGSASYVARE 288

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +         + I ++   ++ +    K L  S  + + I ++       L
Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFGGPSL 331


>gi|284053546|ref|ZP_06383756.1| signal peptide peptidase A [Arthrospira platensis str. Paraca]
 gi|291569284|dbj|BAI91556.1| protease IV [Arthrospira platensis NIES-39]
          Length = 602

 Score =  147 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 9/254 (3%)

Query: 32  EDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYA 82
            ++   +A +   G+I D              E + R+  +D    +++ ++SPGGSA A
Sbjct: 315 PNSRNIIAVVYADGEIVDGRGGIGQVGGDRFSEELRRLRDNDRVKGIVLRVNSPGGSATA 374

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            E I R +Q  +  KP+I  +   AAS GY I+  S+ I A  T++ GSIGV       +
Sbjct: 375 SEVIAREVQLTREEKPIIVSMGNAAASGGYWIAMGSDRIFAEPTTVTGSIGVFGLLFNAQ 434

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
              ++ G++   VK+ P     S       + +Q +Q +VD  Y  FV  V++ R++P +
Sbjct: 435 DIANQNGITWDGVKTGPFADLNSISRPKTDQELQKVQQMVDFIYQRFVSSVAQLRDLPQE 494

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           + L +S GR+W+G +A+ +GL+D +GG ++   ++          K+ ++    ++    
Sbjct: 495 EVLEMSQGRVWSGVQAEALGLVDQLGGLQDAIAAVAEKAELGDDWKLAEYPRIPSFEERL 554

Query: 263 LKNLSISSLLEDTI 276
           L++L   +   D +
Sbjct: 555 LESLRTEATQADPL 568



 Score = 80.4 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 94/241 (39%), Gaps = 15/241 (6%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-------LIERIERISRDDSATALI 70
           V +  +    +      +P +A   I   + + +        ++E IER S+DD    L 
Sbjct: 51  VLVLDLSVGIADTAPPPTPSIA---IGQTLREDRARFLPLRVVLETIERASKDDKIVGLY 107

Query: 71  VSLSS--PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           +  SS          + + RA++  K     I           Y +   ++ I+      
Sbjct: 108 LQGSSGTTPTGFGNLKEVRRALEGFKESGKTIIAYDTDWTEREYYLGSVADQIIIHPMGT 167

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSY 186
           V   G   Q  ++   L++ G+ ++  +    K+   PF   E++P+  Q MQ ++   +
Sbjct: 168 VEMSGFSSQSVFLAGALERFGIGVQVTRVGQYKSAVEPFLRQEMSPENRQQMQQLLGDLW 227

Query: 187 HWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
             F   ++ SR++   +   + +       A+AK   ++D +  ++EV   L  L  ++ 
Sbjct: 228 GEFTGAIASSRSLTTAQLQQIVNQDGFLMAADAKDREMVDHIAHRDEVAAKLRELTEEKE 287

Query: 246 I 246
            
Sbjct: 288 E 288


>gi|238026598|ref|YP_002910829.1| peptidase, U7 family protein [Burkholderia glumae BGR1]
 gi|237875792|gb|ACR28125.1| Peptidase, U7 family protein [Burkholderia glumae BGR1]
          Length = 330

 Score =  147 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 133/289 (46%), Gaps = 16/289 (5%)

Query: 7   KIKTRYV-MLSLVTLTVVYFSWSSHVE-DNSPHVARIAIRGQIE-----DSQELIERIER 59
           +I  R++ ++++V + +  F +S   +  +S H A ++I G+I      ++ ++   ++ 
Sbjct: 46  RIAFRFLWLIAVVAIMLAVFDFSGDGKLSSSRHTALVSIDGEIAAGNSANADDINSALDD 105

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISC 116
              D     +++ ++SPGGS      ++  I++++ +   KP+   V +M AS GY I+ 
Sbjct: 106 AFDDSGTVGVVLHINSPGGSPVQAGIVYDEIRRLRKKYPSKPLYVVVSDMCASGGYYIAA 165

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
           A++ I   + S+VGSIGVL         +DKLGV  +   S   K    PFS   PK  +
Sbjct: 166 AADRIYVNKASIVGSIGVLMDGFGFTGLMDKLGVERRLHTSGENKGFYDPFSPETPKMDE 225

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
             Q ++D  +  F++ V + R      +  +  G  WTGA++ ++GL D  G  + V + 
Sbjct: 226 HAQSMLDEIHAQFIQAVKDGRGKRLHDSPDIFSGLFWTGAKSVELGLADGFGTTDSVARD 285

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           +           I D+   ++      +    +         +  + V+
Sbjct: 286 VLK------APDIVDYTVKESLSSRVARRFGAAIGGGAVKSALSDSAVR 328


>gi|304312941|ref|YP_003812539.1| Peptidase S49 [gamma proteobacterium HdN1]
 gi|301798674|emb|CBL46906.1| Peptidase S49 [gamma proteobacterium HdN1]
          Length = 335

 Score =  147 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 136/292 (46%), Gaps = 16/292 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
             K +   Y  ++L   +V + S    +  +S HV  + + G I      D+ ++ + ++
Sbjct: 50  FFKLLMFVYFFVALAMFSVNWDSGEDSMGASSDHVGVVDLDGMIMAGGDNDADQISKGLQ 109

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115
           R  +  ++ A+++ ++SPGGS      I+R I++++ +   K +   + ++ AS  Y ++
Sbjct: 110 RAFKAQNSKAVLLRINSPGGSPVQSATIYREIKRLRAKYPSKKLYAVITDVGASGAYYVA 169

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I A  +SLVGSIGV+ +       ++KLG+  + + S   KA   PFS + P   
Sbjct: 170 AAADEIYADPSSLVGSIGVISEGFGFVGGMEKLGIERRLITSGKNKAFLDPFSPLAPAHK 229

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
               +V++  +  F+  V + R      +  +  G +W+G +A  +GLID  G    V +
Sbjct: 230 AYFSEVLNVVHQQFINAVKDGRGDRLKDSPDMFSGLVWSGEQALPLGLIDGYGSPGSVVR 289

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS--SLLEDTIPLMKQTKVQ 285
            +  L      +K  D+    + +    ++   S    +   + L    +++
Sbjct: 290 DVIHL------KKTVDYTAKTSPFESFARSFGASFGKSVAAELGLTSDLQLR 335


>gi|261418196|ref|YP_003251878.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. Y412MC61]
 gi|319767844|ref|YP_004133345.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. Y412MC52]
 gi|261374653|gb|ACX77396.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. Y412MC61]
 gi|317112710|gb|ADU95202.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. Y412MC52]
          Length = 335

 Score =  147 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 136/293 (46%), Gaps = 21/293 (7%)

Query: 20  LTVVYFSWSSHVEDNSP---HVARIAIRGQIEDS--------------QELIERIERISR 62
           L ++   +S  V         +A + + G I+D+              Q  ++ I++   
Sbjct: 41  LALMESPFSEEVIAEGDPLKKIAVLEVNGVIQDAGEAESFLSSSQYNHQTFLQMIKQAKE 100

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNI 120
           D    A+I+ ++SPGG       I+  + K+K +  KP+   +  MAAS GY I+ A + 
Sbjct: 101 DQDVKAIILRINSPGGGVAESAEIYDQLMKLKKKTNKPIYVSMGAMAASGGYYIAAAGDK 160

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           I A+  ++ GSIGV+ Q    +    K GV + ++KS P K   +P  ++     +++Q 
Sbjct: 161 IFASPETITGSIGVIMQSVNYEGLAKKYGVELVTIKSGPYKDIMNPARKMTEAEREILQR 220

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +++ SY  FV +V++ R +P D    L+DGRI+ G +AK++ L+D  G  ++   +L   
Sbjct: 221 LINDSYDAFVDVVAKGRKLPEDTVRKLADGRIYDGRQAKELRLVDEFGYLDDAIAALKKE 280

Query: 241 GVDQSIRKIKDWN--PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
                 + +K  N  P  + +      +   S     I L+ +     L  ++
Sbjct: 281 HHLTGAQVVKYVNDAPWSSLFEMVSNRMKPDSEAAGLIRLLSRPSSPRLMYLY 333


>gi|302037855|ref|YP_003798177.1| putative signal peptide peptidase SppA [Candidatus Nitrospira
           defluvii]
 gi|300605919|emb|CBK42252.1| putative Signal peptide peptidase SppA [Candidatus Nitrospira
           defluvii]
          Length = 358

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 131/283 (46%), Gaps = 21/283 (7%)

Query: 31  VEDNSPHVARIAIRGQIEDS------------QELIERIERISRDDSATALIVSLSSPGG 78
                  V  + + G I                 + E +ER ++D+   A+++ ++SPGG
Sbjct: 77  SGTGKDKVLLMDVSGVISSENKDGFYSSPGMLATVKEELERATKDERIKAIVLRINSPGG 136

Query: 79  SAYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           +  A + I+  ++  K   + P++  + ++ AS GY I+ A++ + A  +++ GSIGV+ 
Sbjct: 137 TVTASDIIYHELKSFKTSRKIPIVASIMDVGASGGYYIAAAADTVFAHPSTVTGSIGVIM 196

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                +  L+K+GV   +V S P K   SPF  + P+   + Q V+D  Y  F+++V + 
Sbjct: 197 LTVNARGLLEKVGVETNAVTSGPRKDMGSPFRAMLPEERAIFQGVIDGFYQRFLQVVQDG 256

Query: 197 R-NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
           R N+  +    L+DGRI++G +AK  GL+D +G  E+  +            K+  +  P
Sbjct: 257 RPNMNGETIRKLADGRIYSGEQAKAAGLVDDIGYLEDAIELAKKKAGLTEA-KVVTYRRP 315

Query: 256 KNYWFCDLKNL-----SISSLLEDTIPLMKQTKVQGLWAVWNP 293
             Y       L     S++SL    +  + +        +W P
Sbjct: 316 GEYQNNIYSRLVAPAPSLASLANIDLLSVVRGGSPQFMYLWMP 358


>gi|183981078|ref|YP_001849369.1| protease IV, Ssp [Mycobacterium marinum M]
 gi|183174404|gb|ACC39514.1| protease iv, Ssp [Mycobacterium marinum M]
          Length = 600

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 68/275 (24%), Positives = 124/275 (45%), Gaps = 17/275 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70
            S       P +A +++ G I                     +   +  ++ DD  +A++
Sbjct: 298 PSIPGRRGKPTIAVVSVEGPIVNGRGGPQGLPLGPSSAGGDTIASALREVAADDEVSAIV 357

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + + SPGGS  A E I+R +Q+ ++R KPV+  +  +AAS GY +S  ++ IVA   ++ 
Sbjct: 358 LRVDSPGGSVTASETIWREVQRARDRGKPVVASMGSIAASGGYYVSMGADAIVANPGTIT 417

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+     V+   D+LGV  ++++++      S  +    +     +   D  Y  F
Sbjct: 418 GSIGVITGKLVVRDLKDRLGVGSETLRTNANADAWSIDAPFTDEQRARREAEADMFYTDF 477

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V  V+  RN+  +    ++ GR+WTGA+A + GL+D +GG     +    L       ++
Sbjct: 478 VERVARGRNLRTEDVDAVARGRVWTGADALERGLVDELGGFRTAVRRAKVLAGLDEDTEV 537

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
           +    P +     L     S  +  ++P    T V
Sbjct: 538 RLVGYPGSSLLDLLWPRGSSRPVAASVPEAVGTLV 572



 Score = 92.8 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 2/231 (0%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79
           +            +    +  I+  G+    ++ +  + R + D     LI  +  P   
Sbjct: 38  ILEFNLRTMPAESNGFDPLLIISGGGRPMALRDAVAALHRGAEDPRVAGLIARVQLPPAP 97

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
             A + +  AI      KP +        +  Y ++ A   I    +   G IG      
Sbjct: 98  IGAVQELREAIAAFSAVKPSVAWAETYPGTLSYYLATAFREIWMQPSGEAGLIGFASNAM 157

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +++  LDK+G+  + V     K+    F+E        + +  +++S      + V++SR
Sbjct: 158 FLRDALDKVGIEAQFVARGEYKSAADLFTEDGYTDANREAVTRMLESLQDQVWQAVAQSR 217

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            I       L+D       EA   GLID +G ++E +  +  L   + +  
Sbjct: 218 QIDAGVLDELADKAPLLRDEALSSGLIDRIGFRDEAYARIAELAGVEGVSP 268


>gi|212703644|ref|ZP_03311772.1| hypothetical protein DESPIG_01689 [Desulfovibrio piger ATCC 29098]
 gi|212672939|gb|EEB33422.1| hypothetical protein DESPIG_01689 [Desulfovibrio piger ATCC 29098]
          Length = 363

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 68/261 (26%), Positives = 123/261 (47%), Gaps = 3/261 (1%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             F  S      S  +A + + G I D    +  I+++ R      ++V + SPGG A A
Sbjct: 100 AAFMVSQATGLGSERIALVRVTGPIMDIDAQLRWIDKLGRMPGVKGVLVRVDSPGGGAAA 159

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            + ++ A+ ++   KP+   +   AAS G ++S A   + A  +++ GSIGV    P ++
Sbjct: 160 SQELYEALARLGKDKPIAVSMGSTAASGGLMVSMAGKRVFANASTVTGSIGVRMDIPQIR 219

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LDKLG+  +++ ++P K   S    +        Q V+   +  FV +V++ R++   
Sbjct: 220 GLLDKLGLGRQTLTTAPYKDAGSMLEPLTADEKAYFQGVLKDMHEQFVDIVAQGRHMDRT 279

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           +   L+ G+I+TG EA ++GL+D +GGQ+   + L  +    + R +        +W   
Sbjct: 280 RAARLATGKIFTGREAVELGLVDELGGQQAAHRWLADVCKVPADRPLLTPPSEDEWWEKS 339

Query: 263 LK---NLSISSLLEDTIPLMK 280
           LK    L   +LL    P   
Sbjct: 340 LKTWFGLDADALLGREAPAFL 360


>gi|291485382|dbj|BAI86457.1| signal peptide peptidase [Bacillus subtilis subsp. natto BEST195]
          Length = 335

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 146/319 (45%), Gaps = 42/319 (13%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP------------------------HVARI 41
           K+     + L +  ++++     S  E                             +A +
Sbjct: 4   KRWIALVIALGIFGVSIIVSISMSFFESVKGAQTDLTSLTDESQEKTLENGSLSSKIAVL 63

Query: 42  AIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
            + G I+D+              +  ++ +ER   D +   +++ ++SPGG  Y    I 
Sbjct: 64  EVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIH 123

Query: 88  RAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           + ++++K   +KP+   +  MAAS GY IS A++ I A   +L GS+GV+ +        
Sbjct: 124 KKLEEIKKETKKPIYVSMGSMAASGGYYISAAADKIFATPETLTGSLGVIMESVNYSKLA 183

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           DKLG+S +++KS   K   SP  E+  +   +MQ +VD+SY  FV ++S+ R++   +  
Sbjct: 184 DKLGISFETIKSGAHKDIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRSMSKAEVK 243

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            ++DGR++ G +AKK+ L+D +G  ++   ++     D     +  +   +++    L +
Sbjct: 244 KIADGRVYDGRQAKKLNLVDELGFYDDTITAMKKDHKDLKNASVISYE--ESFGLGSLFS 301

Query: 266 LSISSLLEDTIPLMKQTKV 284
           +  + + +  I  +   ++
Sbjct: 302 MGANKMFKSEIDFLNMREI 320


>gi|288940470|ref|YP_003442710.1| peptidase S49 [Allochromatium vinosum DSM 180]
 gi|288895842|gb|ADC61678.1| peptidase S49 [Allochromatium vinosum DSM 180]
          Length = 336

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 65/302 (21%), Positives = 120/302 (39%), Gaps = 27/302 (8%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSW-----SSHVEDNSPHVARIAIRGQIEDSQE-----LI 54
            ++  T + +L LV L  V  +      S  V+    H A I I+G I    +     +I
Sbjct: 40  RRRWATAFKLLILVYLIGVLIAANSTGLSDAVKVGEDHTALIEIKGVIASDSDASADRVI 99

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---------KPVITEVHE 105
             +           +++ ++SPGGS      I   I+++K +          PV     +
Sbjct: 100 TALRAAFEAKHVKGIVLRINSPGGSPVQAGYINDEIKRLKAKYKKDHDGKDMPVYAVAVD 159

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           + AS GY ++  ++ I   + SLVGSIGV       +  + +LG+  + + +   K    
Sbjct: 160 LCASGGYYVAVGADAIYVDKASLVGSIGVRIDSFGFQEAMQELGIERRLLTAGANKGILD 219

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           PFS +       +Q V+D  +  F+  V + R         L  G  W+G EA ++GL D
Sbjct: 220 PFSPLGDSQRAFIQSVLDRLHGQFIDAVKQGRGDKLKGGDELFSGLFWSGQEAVELGLAD 279

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI--SSLLEDTIPLMKQTK 283
            +G   +V + L          KI ++   ++      K       + + + + +     
Sbjct: 280 GLGSSSQVARELIK------AEKIVEYTEKRDLLESIAKRFGALVGAGMLEGLGVSTGLS 333

Query: 284 VQ 285
           + 
Sbjct: 334 LP 335


>gi|207743609|ref|YP_002260001.1| protease protein [Ralstonia solanacearum IPO1609]
 gi|206595008|emb|CAQ61935.1| protease protein [Ralstonia solanacearum IPO1609]
          Length = 416

 Score =  146 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 129/291 (44%), Gaps = 15/291 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60
           +I  R+V L ++   +  F S+      +  H A +++ G+I       ++ +   +E  
Sbjct: 130 RIFFRFVTLGILGGLLYLFASFEGETVGSGRHTAVVSLDGEIAASTNASAENINASLEAA 189

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCA 117
             DD+   +I+ ++SPGGS      I   I++++ +   I     V EM AS GY ++ A
Sbjct: 190 FADDNTAGVILKINSPGGSPVQAGMINDDIRRLRAKHKDIPLYVVVEEMCASGGYYVAAA 249

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           ++ I   + S+VGSIGVL         +DK+GV  + + +   K    PFS V P+  Q 
Sbjct: 250 ADKIYVDKASIVGSIGVLMDGFGFTGLMDKVGVERRLLTAGANKGMLDPFSPVPPQQRQF 309

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
            Q ++D  +  F+ +V + R         L  G  WTG++A ++GL D +G  + V +  
Sbjct: 310 AQAMLDEVHQQFIDVVKQGRGSRLKDDPQLFSGLFWTGSKAVELGLADGIGSADFVAR-- 367

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                      + D+   +N+     +    +        L    +++ L 
Sbjct: 368 ----NVIKAPDMVDYTVKENFAERVARKFGTAMGAGAIKALAATGQLKLLM 414


>gi|56421326|ref|YP_148644.1| protease [Geobacillus kaustophilus HTA426]
 gi|56381168|dbj|BAD77076.1| protease IV (signal peptide peptidase) [Geobacillus kaustophilus
           HTA426]
          Length = 335

 Score =  146 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 135/293 (46%), Gaps = 21/293 (7%)

Query: 20  LTVVYFSWSSHVEDNSP---HVARIAIRGQIEDS--------------QELIERIERISR 62
           L ++   +S  V         +A + + G I+D+              Q  ++ I++   
Sbjct: 41  LALMESPFSEEVIAEGDPLKKIAVLEVNGVIQDAGEAESLLSSSQYNHQTFLQMIKQAKE 100

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNI 120
           D    A+I+ ++SPGG       I+  + K+K +  KP+   +  MAAS GY I+ A + 
Sbjct: 101 DQDVKAIILRINSPGGGVAESAEIYDQLMKLKKKTNKPIYVSMGAMAASGGYYIAAAGDK 160

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           I A+  ++ GSIGV+ Q    +    K GV + ++KS P K   +P  ++     +++Q 
Sbjct: 161 IFASPETITGSIGVIMQSVNYEGLAKKYGVELVTIKSGPYKDIMNPARKMTEAERKILQR 220

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +++ SY  FV +V++ R +P D    L+DGRI+ G +AK + L+D  G  ++   +L   
Sbjct: 221 LINDSYDAFVDVVAKGRKLPEDTVRKLADGRIYDGRQAKALRLVDEFGYLDDAIAALKKE 280

Query: 241 GVDQSIRKIKDWN--PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
                 + +K  N  P  + +      +   S     I L+ +     L  ++
Sbjct: 281 HHLTGAQVVKYVNDAPWSSLFEMVSNRMKPDSEAAGLIRLLSRPSSPRLMYLY 333


>gi|134095273|ref|YP_001100348.1| putative signal peptide peptidase [Herminiimonas arsenicoxydans]
 gi|133739176|emb|CAL62225.1| Putative peptidase S49 [Herminiimonas arsenicoxydans]
          Length = 334

 Score =  146 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 124/286 (43%), Gaps = 16/286 (5%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSS--HVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60
           I  ++  L L+   +      S   +E+  PH A I I G I      D++ +I  + + 
Sbjct: 51  IFFKFTTLLLIAFALWTSFGPSVSDMENVGPHTALIKIEGTIEAKGAGDAETVISALTKA 110

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCA 117
             D  +  LI+ ++SPGGS      I   I ++     +KP+   V+E+ AS GY I+ A
Sbjct: 111 YADPGSVGLILQINSPGGSPVQAGIINDEITRLRKKYPKKPLYVVVNEICASGGYYIASA 170

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           ++ I   + S+VGSIGVL         ++KLGV  + + +   K    PFS    K  + 
Sbjct: 171 ADRIYVNKASIVGSIGVLMDGFGFTGTMEKLGVERRLLTAGENKGFLDPFSPQTEKQKEY 230

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
            Q +++  +  F+ +V   R     +T  +  G  W+GA++ ++GL D  G  E V +  
Sbjct: 231 AQGMLNEIHQQFIDVVRTGRGKRLKETPEIFSGLFWSGAKSVELGLADGFGTVESVARD- 289

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
                +     I D+   +      L+    ++          QT 
Sbjct: 290 -----EFKATNIVDYTQREGLSDRVLRKFGAAAGESAVKSFAAQTA 330


>gi|52081444|ref|YP_080235.1| signal peptide peptidase [Bacillus licheniformis ATCC 14580]
 gi|52786819|ref|YP_092648.1| hypothetical protein BLi03092 [Bacillus licheniformis ATCC 14580]
 gi|319647352|ref|ZP_08001574.1| SppA protein [Bacillus sp. BT1B_CT2]
 gi|52004655|gb|AAU24597.1| signal peptide peptidase [Bacillus licheniformis ATCC 14580]
 gi|52349321|gb|AAU41955.1| SppA [Bacillus licheniformis ATCC 14580]
 gi|317390699|gb|EFV71504.1| SppA protein [Bacillus sp. BT1B_CT2]
          Length = 335

 Score =  146 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 133/282 (47%), Gaps = 20/282 (7%)

Query: 30  HVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSS 75
              ++S  +A + + G I D+              +  ++ +E+   D +   +++ ++S
Sbjct: 52  EQGNSSRKIAVLEVNGTISDNGGASGLFSSEGYNHRSFLQMLEKAKDDSAVKGIVLRVNS 111

Query: 76  PGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           PGG  Y    I + ++++K   +KP+   +  MAAS GY IS  ++ I AA  +L GS+G
Sbjct: 112 PGGGVYESAEIHKKLEEIKKDTKKPIYVSMGSMAASGGYYISTPADKIFAAPDTLTGSLG 171

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V+ +        +KLG+  +++KS   K   SP  ++  K  ++MQ +VD +Y  FV ++
Sbjct: 172 VIMESLNYSKLAEKLGLKTETIKSGEFKDIMSPTRDMTKKEREIMQSMVDDAYEGFVDVI 231

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           +E R +  +    ++DGR++ G +AK+  LID +G  E+  +++     + +   +  + 
Sbjct: 232 AEGRGMSENDVKKIADGRVYDGRQAKQNHLIDELGYYEDAVKAMKKDHKNLAGASVVSYE 291

Query: 254 PPKN----YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
                   +     K     +   +    + Q+    L  ++
Sbjct: 292 ESAGLASLFSMTANKMFKSEADFLNIKEAISQSGAPRLMYLY 333


>gi|55981463|ref|YP_144760.1| putative protease [Thermus thermophilus HB8]
 gi|55772876|dbj|BAD71317.1| putative protease [Thermus thermophilus HB8]
          Length = 301

 Score =  146 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 139/300 (46%), Gaps = 17/300 (5%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP-----------HVARIAIRGQIEDS--- 50
            K+     + L +  L V     ++      P            V  + + G+I      
Sbjct: 3   RKRWLALALFLGVALLVVGLGRLTASPPAQGPWRETTLYGQGEKVLLLELLGEIPSGKAL 62

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           +  + ++ +   D+   A+++ + SPGG     EA+ RA++ +   KP++  +  +AAS 
Sbjct: 63  ERFLSQVRQAREDEGVRAVVLYVESPGGGVTETEALHRALRALAQEKPLVASLGRVAASG 122

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           GY ++ A+  I+   T++ GSIGV+   P V   L K+GV ++ +K   +K   SP   +
Sbjct: 123 GYYVATAAREILVPPTAVTGSIGVVGYLPQVGELLAKVGVRVEVLKEGRLKDMASPLRPL 182

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
            P+  +++Q ++  +Y  FV+ V+E R +P +K L L+DGRI++G +A  +GL D  G  
Sbjct: 183 TPEEREVVQGLLREAYELFVQRVAEGRGMPREKVLALADGRIYSGKQAVALGLADREGYL 242

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS--ISSLLEDTIPLMKQTKVQGLW 288
           E+  +    L   ++  ++  +  PK                LL+    +  +    GLW
Sbjct: 243 EDAARRAAELAGLKAF-RLVRYTRPKGLLEGLWGEEVPWAQGLLQARFRVEYRYLGGGLW 301


>gi|167837368|ref|ZP_02464251.1| peptidase, U7 family protein [Burkholderia thailandensis MSMB43]
          Length = 333

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 123/289 (42%), Gaps = 17/289 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           +I  R+  L ++      F   S       +  H A + I G+I      +++++   ++
Sbjct: 48  RIFFRFAFLVVLGALAFAFLSVSGDGSKLASGRHTAVVTIEGEIAASTNANAEDINTALD 107

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115
               D     +++ ++SPGGS      ++  I++++ +   KP+   V +M AS GY I+
Sbjct: 108 SAFEDSGTVGVVLKINSPGGSPVQAGIVYDEIRRLRKKYPGKPLYVVVSDMCASGGYYIA 167

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         + KLGV  +   S   K    PFS   PK  
Sbjct: 168 AAADKIYVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFFDPFSPETPKMD 227

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q ++D  +  F++ V + R     ++  +  G  WTGA++ ++GL D  G  + V +
Sbjct: 228 AHAQAMLDQIHEQFIKAVKDGRGARLHESPDIFSGLFWTGAKSIELGLADDYGTTDTVAR 287

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
            +           + D+   ++      +    +         +   ++
Sbjct: 288 DVLK------APDLVDYTVKESLTDRVARRFGAAVGKAALKAAVAGGEL 330


>gi|270294203|ref|ZP_06200405.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. D20]
 gi|270275670|gb|EFA21530.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. D20]
          Length = 589

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 131/270 (48%), Gaps = 13/270 (4%)

Query: 30  HVEDNSPHVARIAIRGQI------------EDSQELIERIERISRDDSATALIVSLSSPG 77
             + +   +A     G+I             DS+++I+ + ++  D+   A+++ ++SPG
Sbjct: 298 PKDKSGNVIAVYYAYGEIDGGSSSASSEEGIDSKKVIKDLRKLKDDEDVKAVVLRVNSPG 357

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           GSAY  E I+ A+ ++K  KPVI  + + AAS GY ISC ++ IVA  T+L GSIG+   
Sbjct: 358 GSAYGSEQIWYAVSELKKEKPVIVSMGDYAASGGYYISCNADTIVAEPTTLTGSIGIFGM 417

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +P  K   DK+GV+   VK++           +N     +MQ  V++ Y  F+   S+ R
Sbjct: 418 FPNAKGLTDKIGVNFDVVKTNKYADFGMLTRPMNDGEKGLMQMYVNNGYDLFLTRCSDGR 477

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
            I  +    ++ GR+WTG++AK++GL+D +GG ++      A         +  +   ++
Sbjct: 478 GISKEDLDKIAQGRVWTGSKAKELGLVDELGGLDKALDIAIAKAGV-DAYTVMSYPKKES 536

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           ++   +     + +    +        Q  
Sbjct: 537 FFESLMNTNPGNYIKARMLKGTMGEIYQQF 566



 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 95/254 (37%), Gaps = 23/254 (9%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQELIERIE 58
           + +  +  S  S  +     +  + + G +                       +++  I+
Sbjct: 28  LVVFSMVSSSESETQVRKNSIMMLDLNGALAERSQDNPFDALMGDNYKTYGLDDILSSIK 87

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118
           +   +D    + +  +S G    + E I  A++  K     I    +  +   Y +S  +
Sbjct: 88  KAKENDDIKGIYIEATSLGAGFASREEIRNALKDFKESGKFIVAYGDSYSQGLYYLSSVA 147

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQ 176
           + ++     +V   G+     + K  L K+GV ++  K    K+   PF  +E++P   +
Sbjct: 148 DKVLLNPQGMVEWRGLAATPMFFKDLLAKIGVEMQIFKVGTYKSAVEPFISTEMSPANRE 207

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLIDVVGGQEEVW 234
            +   + S +      V+ESR I  D    ++D     +   E+ + GL+D +  + +V 
Sbjct: 208 QIDAYLTSIWGQVTNDVAESRKISVDSLNAIADRMLMFYPAEESVQCGLVDTLIYKNDVR 267

Query: 235 QSLYALGVDQSIRK 248
             L A+       +
Sbjct: 268 NYLKAMVGIDKDDR 281


>gi|255536295|ref|YP_003096666.1| putative protease IV [Flavobacteriaceae bacterium 3519-10]
 gi|255342491|gb|ACU08604.1| putative protease IV [Flavobacteriaceae bacterium 3519-10]
          Length = 584

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 67/269 (24%), Positives = 130/269 (48%), Gaps = 9/269 (3%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------SQELIERIERISRDDSATAL 69
           ++      S+          +A +   G I          S++LI+ I+++++++    +
Sbjct: 285 ISFNKYIGSYKEDNIKKDNQIAVLYASGAIYSGEGIDGIYSEDLIKEIKKLTKNEKVKGV 344

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           ++ ++SPGGSA A + I   +Q++K +KP+I    + AAS GY I+ A++ I A   +L 
Sbjct: 345 VLRINSPGGSANASDEILFELQQLKAKKPLIVSFGDYAASGGYYIAMAADRIYAEPNTLT 404

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV   +PY K   +K G+S  SV ++      S  + + P    +MQ  V+ +Y  F
Sbjct: 405 GSIGVFGVFPYFKEIANKNGLSAHSVNTNANSNMFSTINGITPGGAAVMQKSVEMTYKRF 464

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V  V+++RN  + +   +  GR+W+G  AK++GL+D +G   +  +        +    +
Sbjct: 465 VHFVTQNRNRSFAQIDEIGGGRVWSGIRAKQIGLVDEIGNLNDAVKFAAQQAKLKD-YNV 523

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPL 278
             +    + +    K++    L    +  
Sbjct: 524 ASYPKKVSQFEQLFKDMDQEQLTTKLLKS 552



 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/314 (12%), Positives = 107/314 (34%), Gaps = 32/314 (10%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------- 51
           +  +   ++M  ++ +     + S+     +  V  +  +  I DS              
Sbjct: 15  ILLLGGFFIMFVILMVAYSAITDSNKSAIPNNSVLTLDFKTNIIDSPLEDSDKIFDFAEK 74

Query: 52  -------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH 104
                  +++E I++   DD    + +            + I  A+Q  +     +    
Sbjct: 75  QNNIMVYDMVEAIQKAETDDKIKGISIETDGLSAGMTQIDNIRTALQNFRKSGKFVYAYG 134

Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164
              + + Y +   ++         +   G+  +  Y+K F +K G+ I+ ++    K+  
Sbjct: 135 NTVSQSAYYLGSVADRYYLNPAGGIDLKGLSTEVLYLKSFAEKFGIGIEVIRHGKYKSAV 194

Query: 165 SPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK----TLVLSDGRIWTGAEA 218
            PF   +++P+  + +  ++   +    R ++ SR +   +       L          +
Sbjct: 195 EPFLRDDMSPENKEQLSTLLTDLWMPTARNIASSRKMDTAQFRTAVDSLYGA---IPDLS 251

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW---NPPKNYWFCDLKNLSISSLLEDT 275
               L D +  + E    L      +   K+ +        +Y   ++K  +  ++L  +
Sbjct: 252 LSHKLADKLIQKSEYDNLLKTKLNLKEKDKLNNISFNKYIGSYKEDNIKKDNQIAVLYAS 311

Query: 276 IPLMKQTKVQGLWA 289
             +     + G+++
Sbjct: 312 GAIYSGEGIDGIYS 325


>gi|46199432|ref|YP_005099.1| putative protease IV transmembrane protein [Thermus thermophilus
           HB27]
 gi|46197058|gb|AAS81472.1| putative protease IV transmembrane protein [Thermus thermophilus
           HB27]
          Length = 301

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 139/300 (46%), Gaps = 17/300 (5%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP-----------HVARIAIRGQIEDS--- 50
            K+     + L +  L V     ++      P            V  + + G+I      
Sbjct: 3   RKRWLALALFLGVALLVVGLGRLTARPPAQGPWRETTLYGQGEKVLLLELLGEIPSGKAL 62

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           +  + ++ +   D+   A+++ + SPGG     EA+ RA++ +   KP++  +  +AAS 
Sbjct: 63  ERFLSQVRQAREDEGVRAVVLYVESPGGGVTETEALHRALRALAQEKPLVASLGRVAASG 122

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           GY ++ A+  I+   T++ GSIGV+   P V   L K+GV ++ +K   +K   SP   +
Sbjct: 123 GYYVATAAREILVPPTAVTGSIGVVGYLPQVGELLAKVGVRVEVLKEGRLKDMASPLRPL 182

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
            P+  +++Q ++  +Y  FV+ V+E R +P +K L L+DGRI++G +A  +GL D  G  
Sbjct: 183 TPEEREVVQGLLREAYELFVQRVAEGRGMPREKVLALADGRIYSGKQAVALGLADREGYL 242

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS--ISSLLEDTIPLMKQTKVQGLW 288
           E+  +    L   ++  ++  +  PK                LL+    +  +    GLW
Sbjct: 243 EDAARRAAELAGLKAF-RLVRYTRPKGLLEGLWGEEVPWAQGLLQARFRVEYRYLGGGLW 301


>gi|156743028|ref|YP_001433157.1| signal peptide peptidase SppA, 36K type [Roseiflexus castenholzii
           DSM 13941]
 gi|156234356|gb|ABU59139.1| signal peptide peptidase SppA, 36K type [Roseiflexus castenholzii
           DSM 13941]
          Length = 348

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 69/273 (25%), Positives = 123/273 (45%), Gaps = 23/273 (8%)

Query: 34  NSPHVARIAIRGQIEDS------------QELIERIERISRDDSATALIVSLSSPGGSAY 81
            +  +  I + G I               ++L+ +I   + D    A+++ + SPGGS  
Sbjct: 75  GNDRIVVITVSGTIGADAGDGLFTTGLSHEQLLSQIRTAANDSRVKAVVLRVDSPGGSVV 134

Query: 82  AGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           A   ++  ++K++ + KP++  +  +AAS GY IS A   I A   +L GS+GV+     
Sbjct: 135 ASNELYVELKKLREKGKPLVISMGSIAASGGYYISMAGERIYANPDTLTGSLGVIVSLLN 194

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
                ++LG+     KS   K   SP     P+   +   +VD +Y  F+ ++ E R + 
Sbjct: 195 YDEAFERLGLREYVYKSGDFKDIGSPLRPPQPEEEAIWNALVDEAYQGFIDVIVEGRGME 254

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
             + + L+DGRI+TG +AK +GLID +G  E+  +    L        ++          
Sbjct: 255 RTEVIRLADGRIYTGRQAKALGLIDELGNLEDAIEGAKELAGLTDALIVRY---RSFNTL 311

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
            +L   ++   L+ + PL       GL A+  P
Sbjct: 312 RELLQANLEQNLQPSDPL-------GLRAIAQP 337


>gi|158335227|ref|YP_001516399.1| signal peptide peptidase SppA [Acaryochloris marina MBIC11017]
 gi|158305468|gb|ABW27085.1| signal peptide peptidase SppA, 36K type [Acaryochloris marina
           MBIC11017]
          Length = 315

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 149/306 (48%), Gaps = 25/306 (8%)

Query: 10  TRYVMLSLVTLTVVYF-------SWSSHVEDNSPHVARIAIRGQIED------------- 49
            R + L+LVTL ++         S +   +  S +VA+I + G I D             
Sbjct: 4   NRVLALALVTLCLIAALGNWLGGSVNKSKDQGSANVAQINVYGVISDEASGGPFSSGEGA 63

Query: 50  -SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV--ITEVHEM 106
            + +LI  I++   DD   A+++ ++SPGG+A A +A++  + + +    +  +  + ++
Sbjct: 64  NANKLISNIKKAREDDGIKAILLRINSPGGTAAASQAVYEELMRTRKDTDIKIVASLGDV 123

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           AAS GY I+ A++ IVA  +S+ GSIGV+ Q   V   LDK+GV   +  S P+K   SP
Sbjct: 124 AASGGYYIASAADHIVANPSSITGSIGVIVQTQNVTSLLDKVGVQTNTFTSGPLKDILSP 183

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
           F E  P+  +++Q +VD SY  F+  +   R +P +K   L+DGRI+TG +AK   L+D 
Sbjct: 184 FRETKPEERKILQSIVDDSYQQFLDAIVAGRGMPLEKLKPLADGRIYTGTQAKDNKLVDS 243

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +G   +       L       K+KD+   K   F D      +S         +    + 
Sbjct: 244 LGNYYDALDKTAELANISGDPKVKDFG--KGSLFGDFGPFLSTSNQSFPQLTTEWLSSKS 301

Query: 287 LWAVWN 292
            W  W+
Sbjct: 302 QWPRWH 307


>gi|167919892|ref|ZP_02506983.1| peptidase, U7 family protein [Burkholderia pseudomallei BCC215]
          Length = 580

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 121/273 (44%), Gaps = 17/273 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           +I  R+  L+++      F   S       +  H A + I G+I      +++++   ++
Sbjct: 20  RIFFRFAFLAVLGALAFAFLSVSGDGGKLASGRHTAVVTIDGEIAASTNANAEDINTALD 79

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115
               D     +++ ++SPGGS      ++  I++++ +   KP+   V +M AS GY I+
Sbjct: 80  SAFEDSGTVGVVLKINSPGGSPVQAGIVYDEIRRLRKKYPAKPLYVVVSDMCASGGYYIA 139

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         + KLGV  +   S   K    PFS   PK  
Sbjct: 140 AAADKIYVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFFDPFSPETPKMD 199

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q+++D  +  F++ V + R     ++  +  G  WTGA++ ++GL D  G  + V +
Sbjct: 200 AHAQEMLDEIHAQFIKAVKDGRGARLHESPDIFSGLFWTGAKSIELGLADDYGTTDTVAR 259

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
            +           + D+   ++      +    
Sbjct: 260 DVLK------APDLVDYTVKESLTDRVARRFGA 286


>gi|46907816|ref|YP_014205.1| U7 family peptidase [Listeria monocytogenes serotype 4b str. F2365]
 gi|46881085|gb|AAT04382.1| peptidase, U7 family [Listeria monocytogenes serotype 4b str.
           F2365]
          Length = 337

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 71/280 (25%), Positives = 134/280 (47%), Gaps = 19/280 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76
            E  +  +A +++ G I+D+ +               ++++E++  DD+   +++ ++SP
Sbjct: 56  EEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLEQVRNDDNIQGVLLYVNSP 115

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG       I   I +++  +  P    +  MAAS GY IS  ++ I A++ +L GS+GV
Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           + Q       + KLGVS  ++KS   K   S    +     ++MQ ++D SY+ FV++V+
Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           + R +  ++   ++DGRI+ G +AK+ GLID  G QE+  ++L           I+   P
Sbjct: 236 QGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALEALKKEQGLADATVIQYDTP 295

Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291
                   +    IS   + +   I L    K   +  ++
Sbjct: 296 ENFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYLY 335


>gi|319792205|ref|YP_004153845.1| peptidase s49 [Variovorax paradoxus EPS]
 gi|315594668|gb|ADU35734.1| peptidase S49 [Variovorax paradoxus EPS]
          Length = 343

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 60/282 (21%), Positives = 117/282 (41%), Gaps = 8/282 (2%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIERIS 61
            ++  ++   +          +      + H A + I+G+I       ++ ++  ++   
Sbjct: 62  FVRLAWLAFFIFLAWFALSRSTPSTAKTTAHTAVVEIKGEIAAGGDASAEFVVAAMKTAF 121

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASN 119
            D+ A  +++ ++SPGGS      I   I+++K +  KPV   V E  ASA Y I+  ++
Sbjct: 122 EDEGAKGVVLLINSPGGSPVQAGIINDEIKRLKAKHKKPVYAVVEETCASAAYYIAAGAD 181

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179
            I   + S+VGSIGVL         +DK+GV  + + +   K    PFS ++       Q
Sbjct: 182 KIFVDKASIVGSIGVLMDGFGFTGVMDKVGVERRLLTAGENKGFLDPFSPMSDAQRAHAQ 241

Query: 180 DVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
            +++  +  F+ +V   R       T  L  G  W+G +A + GL D +G  + V + + 
Sbjct: 242 TMLNQIHAQFINVVKTGRGDRLKLDTPGLFSGLFWSGEQAVEYGLADQLGNVDFVAREVI 301

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
                    +  +        F      +    L+   P ++
Sbjct: 302 KAEEVIDYTRRDNVAEKLAKKFGAAMGEASVRSLQVATPALR 343


>gi|256820055|ref|YP_003141334.1| signal peptide peptidase SppA, 67K type [Capnocytophaga ochracea
           DSM 7271]
 gi|256581638|gb|ACU92773.1| signal peptide peptidase SppA, 67K type [Capnocytophaga ochracea
           DSM 7271]
          Length = 590

 Score =  145 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 107/244 (43%), Gaps = 9/244 (3%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLS 74
                +  + +   +A I   G+I           ++ +I  + + S +    A+++ ++
Sbjct: 296 AVVGKATGKHSKNKIAVIYADGEIMQGEGRAEIVGNETIIRALRKASDNKDIKAIVLRIN 355

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGG A A E + R I+  K +K V   +   AAS GY I+C +N I A   ++ GSIGV
Sbjct: 356 SPGGDALASELMHREIEVTKKKKKVYVSMGNYAASGGYYIACNANRIFAEAGTITGSIGV 415

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
               P V       G++ ++V + P     S F +   +  + M + ++  Y  F+  V+
Sbjct: 416 FGVIPNVNALATNWGINAETVSTHPNAQFYSVFQKPTEQFKKEMTESIEQVYTVFLDRVA 475

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           + R     +   ++ GR+W+G EA   GL+D +G   +           +  R +     
Sbjct: 476 KGRGKTVAQIDSIAQGRVWSGKEALANGLVDEIGSLNDAIAYAAKDNGLKEYRTVSYPTF 535

Query: 255 PKNY 258
             ++
Sbjct: 536 EMDF 539



 Score = 93.9 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 104/274 (37%), Gaps = 25/274 (9%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTV---VYFSWSSHVEDNSPHVARIAIRGQIEDSQE----- 52
           + F +       + L  +++ +   V  +    V      V  ++    + D  E     
Sbjct: 12  LGFFISMGICFILFLIFISVMISSVVGGAKGEEVSVKDNSVLELSFEEPLVDYGERITFK 71

Query: 53  --------------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
                          ++ IE    D     + +  +   G     + + +A++  K    
Sbjct: 72  DFDYTSESYNGLNATLKAIENAKTDKRIKGIYLKSTGNIGGLAFAQELRKALEDFKTSGK 131

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            +    +  +   Y +   ++ +  ++   V   G+  +  + K   +K GV ++ ++  
Sbjct: 132 FVLAYSDEISQLDYYLQTVADKVYISQLGSVALRGLSSEVLFFKGLQEKSGVQMEVIRHG 191

Query: 159 PMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTG 215
             K+   PF +  ++    + + +++ + ++  V  +++SRNIP +K   ++      T 
Sbjct: 192 KYKSAVEPFLDNKMSDNNRKQLTELLSAMWNVIVTDIAKSRNIPVEKLNEIATNVGGRTA 251

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
             AK  GLID +  ++E  Q +      +SI K+
Sbjct: 252 QLAKNNGLIDGILFRDEFEQIICDKTGSKSIDKV 285


>gi|152980027|ref|YP_001353040.1| U7 family peptidase [Janthinobacterium sp. Marseille]
 gi|151280104|gb|ABR88514.1| peptidase U7 family [Janthinobacterium sp. Marseille]
          Length = 334

 Score =  145 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 126/286 (44%), Gaps = 16/286 (5%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSS--HVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60
           I  ++V ++L+   +      S   +E+  PH A I I G I      D+  +I  + + 
Sbjct: 51  IFFKFVTVALIAFALWMSFGPSVGDMENVGPHTALIKIDGTIEAKGAGDADSVISALTKA 110

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCA 117
             D  +  LI+ ++SPGGS      I   + +++ +   KP+   V+EM AS GY I+ A
Sbjct: 111 YADPGSVGLILQINSPGGSPVQAGIINDEMTRLRKKYPQKPLYVVVNEMCASGGYYIAVA 170

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           ++ I   + SLVGSIGVL         ++KLGV  + + +   K    PFS         
Sbjct: 171 ADRIYVNKASLVGSIGVLMDGFGFTGTMEKLGVERRMLTAGNNKGFMDPFSPQTETQKHY 230

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
            QD+++  +  F+ +V + R     +T     G +WTGA++ ++GL D  G  E V +  
Sbjct: 231 AQDMLNEIHQQFIDVVRKGRGKRLKETPETFSGLVWTGAKSIELGLADGFGTVESVARD- 289

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
                +     I D+   +      L+    ++       + +   
Sbjct: 290 -----EFKSTNIVDYTQREGLSDRVLRKFGAAAGASAVKAITESAA 330


>gi|297529049|ref|YP_003670324.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. C56-T3]
 gi|297252301|gb|ADI25747.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. C56-T3]
          Length = 335

 Score =  145 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 135/293 (46%), Gaps = 21/293 (7%)

Query: 20  LTVVYFSWSSHVEDNSP---HVARIAIRGQIEDS--------------QELIERIERISR 62
           L ++   +S  V         +A + + G I+D+              Q  ++ I++   
Sbjct: 41  LALMESPFSEEVIAEGDPLKKIAVLEVNGVIQDAGEAESFLSSSQYNHQTFLQMIKQAKE 100

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNI 120
           D    A+I+ ++SPGG       I+  + K+K +  KP+   +  MAAS GY I+ A + 
Sbjct: 101 DQDVKAIILRINSPGGGVAESAEIYDQLMKLKKKTNKPIYVSMGAMAASGGYYIAAAGDK 160

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           I A+  ++ GSIGV+ Q    +    K GV + ++KS P K   +P  ++     +++Q 
Sbjct: 161 IFASPETITGSIGVIMQSVNYEGLAKKYGVELVTIKSGPYKDIMNPARKMTEAEREILQQ 220

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +++ SY  FV +V++ R +P D    L+DGRI+ G +AK + L+D  G  ++   +L   
Sbjct: 221 LINDSYDAFVDVVAKGRKLPEDTVRKLADGRIYDGRQAKALLLVDEFGYLDDAIAALKKE 280

Query: 241 GVDQSIRKIKDWN--PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
                 + +K  N  P  + +      +   S     I L+ +     L  ++
Sbjct: 281 HHLTGAQVVKYVNDAPWSSLFEMVSNRMKPDSEAAGLIRLLSRPSSPRLMYLY 333


>gi|332827777|gb|EGK00512.1| signal peptide peptidase SppA, 67K type [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 584

 Score =  145 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 65/258 (25%), Positives = 132/258 (51%), Gaps = 9/258 (3%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------SQELIERIERISRDDSATA 68
           L ++  +      +   +   +A +   G I D        S+  ++ +E++  +D   A
Sbjct: 285 LASVKDMTTVPFENKSKSKDIIAILYAEGSITDGSGTDGITSKRFVKELEKLKDNDKVKA 344

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           ++  ++SPGGSAYA E I++A+  +K +KPV+  + + AAS GY ISC ++ I+A   +L
Sbjct: 345 VVFRVNSPGGSAYASEQIWKAVTDLKEKKPVVVSMGDYAASGGYYISCNASKIIAQPNTL 404

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIG+   +P V+    K+G++  +VK++ +         +      ++Q+ ++  Y  
Sbjct: 405 TGSIGIFGMFPNVEGLTKKVGLTFDNVKTNKLADFGDLTRPMRDDEKAILQNYIERGYDL 464

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           F+   S+ R I  +    ++ GR+WTG +A K+GL+D +GG ++  +    L   +    
Sbjct: 465 FLTRCSDGRGIDKNSLDSIAQGRVWTGNQALKIGLVDELGGIDKAIEEAAKLANLED-YS 523

Query: 249 IKDWNPPKNYWFCDLKNL 266
           +  +   ++++   L + 
Sbjct: 524 LNSFPKKRDFFESFLSDQ 541



 Score = 93.1 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 102/308 (33%), Gaps = 33/308 (10%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------------------EDSQ 51
           +   +  + +   S           V  + + G +                         
Sbjct: 21  ICFLIFFIVLAAMSAKESYTLKDNTVLTLKLEGILSERVEEENPLLAMLNQNSEPQIGLD 80

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
           +++  I++   +D    + ++  +   S  + + +   +   K     I    ++     
Sbjct: 81  DIVSSIKKAKENDKIKGIYINAGAFSASGASLKEMRDQLVDFKESGKFIVAYSDVYTQGC 140

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--E 169
           Y +S  ++ ++      +   G+     + K  LDK+G+ ++  K    K+   PF   +
Sbjct: 141 YYLSSVADKLIMNPEGHLDLHGLSASPMFYKGLLDKIGIEMQIFKVGTFKSAVEPFMLDK 200

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--GAEAKKVGLIDVV 227
           ++    + +   +   +      +S SRNI  +K  V++D            + GL+D +
Sbjct: 201 MSDANREQVSSYIGDMWSTITSEISASRNISVEKLNVITDSLALFKKSEVCVQDGLVDTL 260

Query: 228 GGQEEVWQSLY------ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
             +  V + L           D  +  +KD       +    K+  I ++L     +   
Sbjct: 261 MYETGVREYLKTLLTGVEKAKDVRLASVKDMTTV--PFENKSKSKDIIAILYAEGSITDG 318

Query: 282 TKVQGLWA 289
           +   G+ +
Sbjct: 319 SGTDGITS 326


>gi|108798015|ref|YP_638212.1| signal peptide peptidase SppA, 67K type [Mycobacterium sp. MCS]
 gi|119867110|ref|YP_937062.1| signal peptide peptidase SppA, 67K type [Mycobacterium sp. KMS]
 gi|108768434|gb|ABG07156.1| signal peptide peptidase SppA, 67K type [Mycobacterium sp. MCS]
 gi|119693199|gb|ABL90272.1| signal peptide peptidase SppA, 67K type [Mycobacterium sp. KMS]
          Length = 593

 Score =  145 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 64/283 (22%), Positives = 117/283 (41%), Gaps = 21/283 (7%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70
            S       P +A + + G I                     +   +   + D   +A++
Sbjct: 291 PSIPGRKAKPTIAVVTLHGPIVSGRGGPGLSPLGNSSAGGDTITAALREAAADKDVSAIV 350

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLV 129
           + + SPGGS    E I+R + + +     +   +  +AAS GY +S  ++ IVA   ++ 
Sbjct: 351 LRVESPGGSVTGSETIWREVLRTREGGTPVVASMGAVAASGGYYVSMGADAIVANPGTIT 410

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+      +   D+LGV   SV+++      S  S    +    ++   D  Y  F
Sbjct: 411 GSIGVVTGKLVARELKDRLGVGSDSVRTNANADAWSANSPFTDEQQAHVEAEADLFYTDF 470

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V  V++ R +  D+   ++ GR+WTGA+AK  GL+D +GG          L   +    +
Sbjct: 471 VERVADGRGLSVDEVAEVARGRVWTGADAKDRGLVDELGGLRTAIDRAKVLAGLEPDTDV 530

Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288
           +    P +     L+    +   ++ L D + ++    V  L 
Sbjct: 531 RIVGYPASSLLDLLRPKQSSQPAAASLPDALGVLVGRSVVSLI 573



 Score =  100 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 84/237 (35%), Gaps = 2/237 (0%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79
           +  +              +A I+  G+    ++++  I R + DD    LI  +      
Sbjct: 34  VLELDLMSVPPETSGFDPLAMISAGGRPMVLRQVVAAIHRAADDDRVAGLIARVQISAAP 93

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           A   + +  AI     +KP +        +  Y ++ A   +    +  VG +G      
Sbjct: 94  AAPVQELREAIAAFGAKKPSVAWAETYPGTLSYYLASAFREVWMQPSGTVGLVGFATSAL 153

Query: 140 YVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +++  LDK G+  +       K+               +    +++S     +  V+ESR
Sbjct: 154 FLRDALDKAGIQAQFTARGEYKSAANLFTQDSYTEPHREADSRLIESLNQQVLTAVAESR 213

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
            +  D    L+D        A   GL+D +G ++E +  +  L   + +      +P
Sbjct: 214 KLNPDDIDALADKAPLLRDAAVGGGLVDRIGFRDEAYARVAELAGAEGVTPQNTDSP 270


>gi|207725234|ref|YP_002255630.1| protease protein [Ralstonia solanacearum MolK2]
 gi|206590468|emb|CAQ37430.1| protease protein [Ralstonia solanacearum MolK2]
          Length = 414

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 129/291 (44%), Gaps = 15/291 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60
           +I  R+V L ++   +  F S+      +  H A +++ G+I       ++ +   +E  
Sbjct: 128 RIFFRFVTLGILGGLLYLFASFEGETVGSGRHTAVVSLDGEIAASTNASAENINASLEAA 187

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCA 117
             DD+   +I+ ++SPGGS      I   I++++ +   I     V EM AS GY ++ A
Sbjct: 188 FADDNTAGVILKINSPGGSPVQAGMINDDIRRLRAKHKDIPLYVVVEEMCASGGYYVAAA 247

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           ++ I   + S+VGSIGVL         +DK+GV  + + +   K    PFS V P+  Q 
Sbjct: 248 ADKIYVDKASIVGSIGVLMDGFGFTGLMDKVGVERRLLTAGANKGMLDPFSPVPPQQRQF 307

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
            Q ++D  +  F+ +V + R         L  G  WTG++A ++GL D +G  + V +  
Sbjct: 308 AQAMLDEVHQQFIDVVKQGRGSRLKDDPQLFSGLFWTGSKAVELGLADGIGSADFVAR-- 365

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                      + D+   +N+     +    +        L    +++ L 
Sbjct: 366 ----NVIKAPDMVDYTVKENFAERVARKFGTAMGAGAIKALAATGQLKLLM 412


>gi|333029937|ref|ZP_08457998.1| signal peptide peptidase SppA, 67K type [Bacteroides coprosuis DSM
           18011]
 gi|332740534|gb|EGJ71016.1| signal peptide peptidase SppA, 67K type [Bacteroides coprosuis DSM
           18011]
          Length = 591

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 135/254 (53%), Gaps = 11/254 (4%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDS----------QELIERIERISRDDSATALIVSL 73
            F      +    ++A     G I D+          + +++ ++++  +++  A+++ +
Sbjct: 296 VFIPKDQTKKKDGNIAIYYAEGDIVDASNKFASAIVGESVVKDLKKLEENENIKAVVLRV 355

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           +SPGGSAYA E I++A+  +K +KPVI  + + AAS GY IS A++ I+A  T+L GSIG
Sbjct: 356 NSPGGSAYASEQIWKAVVDLKAKKPVIVSMGDYAASGGYYISAAADHIIAEPTTLTGSIG 415

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           +    P  +   +K+G++   VK++      S F   N    Q++Q  ++  Y  F++  
Sbjct: 416 IFAMIPSFEKVANKVGLNFDVVKTNKHADFGSIFRNFNADERQLLQFYIEEGYGLFIKRC 475

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           ++ R I  ++   +++GR+WTGA+AK++GLID +GG  +  +   +         ++ + 
Sbjct: 476 ADGRGISEEEIRKIAEGRVWTGAKAKEIGLIDELGGLNDALEYAASKAGLT-TYNVRTYP 534

Query: 254 PPKNYWFCDLKNLS 267
              +++   L+  S
Sbjct: 535 TQPDFFEQLLQMTS 548



 Score = 85.8 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 90/274 (32%), Gaps = 28/274 (10%)

Query: 11  RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI----------------------- 47
            +  L  V +  +  S    V      V  + + G +                       
Sbjct: 22  LFFFLFSVVIGSIISSSDKDVIVKESSVLELKLEGSLSERALENPLADLFDINPLNSSQS 81

Query: 48  -EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
                +L+  I++     +   + +   +   S  + EAI +A+   K     I    + 
Sbjct: 82  SVGLNDLLSSIKKAKNHSNIKGIYIEAKNLSASFASLEAIRKALIDFKESGKFIISYADQ 141

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                Y ++  ++ +       +   G+  Q  +    L  +GV ++  K    K+   P
Sbjct: 142 YTQGLYYLASVADEVHLNPKGGLLWAGLAAQPMFYTTLLKNIGVDMQIFKVGTYKSAVEP 201

Query: 167 FSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGAE-AKKVG 222
           ++E  ++    + +   ++  +   V  VS +RNI  +K    +D  + +   E A    
Sbjct: 202 YTETKMSQANKEQVSVFLNDIWSHIVSGVSTARNISQEKLQEYADKMVLFQPTEFALNNH 261

Query: 223 LIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           L+D +  + +V  ++      +    I       
Sbjct: 262 LVDKLSYRYDVQNAIKEKLNGEKANYISFKKMKH 295


>gi|311069439|ref|YP_003974362.1| signal peptide peptidase [Bacillus atrophaeus 1942]
 gi|310869956|gb|ADP33431.1| signal peptide peptidase [Bacillus atrophaeus 1942]
          Length = 334

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/318 (19%), Positives = 148/318 (46%), Gaps = 41/318 (12%)

Query: 6   KKIKTRYVMLSLVTLTVVY---FSWSSHVEDNSP--------------------HVARIA 42
           K+     + L +  ++++     ++  +   N+                      +A + 
Sbjct: 4   KRWIALVIALGIFGVSLIASLTIAFFENFSGNTDITSLNDESQEVTLEDGNLSSKIAVLE 63

Query: 43  IRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           + G I+D+              +  ++ +E+   D +   +++ ++SPGG  Y    I +
Sbjct: 64  VSGTIQDNGDSSSLLGSDGYNHRTFLKNLEQAKEDKTVKGIVLKVNSPGGGVYESAEIHK 123

Query: 89  AIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
            ++++K   +KP+   +  MAAS GY IS  ++ I A+  ++ GS+GV+ +        D
Sbjct: 124 KLEEIKKETKKPIYVSMGSMAASGGYYISADADKIYASPETITGSLGVIMESVNYSKLAD 183

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           +LG+  +++KS   K   S   ++  +  ++MQ +VD+SY  FV ++S+ RN+   +   
Sbjct: 184 ELGIKFETIKSGAHKDIMSATRDMTDEEKKIMQSMVDNSYEGFVDVISKGRNMSEAEVKK 243

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           ++DGR++ G +AKK+ L+D +G  ++   ++     +     +  +   +++    L ++
Sbjct: 244 IADGRVYDGKQAKKLNLVDELGFYDDTIAAMKKDHKNLKDASVVTYE--ESFGLGSLFSM 301

Query: 267 SISSLLEDTIPLMKQTKV 284
             + + +  I  +   ++
Sbjct: 302 GANKMFKSEIDFLNMKEL 319


>gi|218458242|ref|ZP_03498333.1| signal peptide peptidase SppA, 36K type [Rhizobium etli Kim 5]
          Length = 269

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 106/255 (41%), Positives = 166/255 (65%), Gaps = 1/255 (0%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVS 72
           V L +      Y           PH+A + I G I D  EL+ER++++   D   A ++S
Sbjct: 5   VALVVALGLAFYGFAFGGAGTERPHIAHVTISGLIVDDDELLERLKKVETSDQVKAAVIS 64

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           +SSPGG+ Y GE IF+AI+ +  +KPV+++V  +AASAGY+++ A + I+A ++S+ GSI
Sbjct: 65  ISSPGGTTYGGEKIFKAIRAISAKKPVVSDVRTLAASAGYMVATAGDTIIAGDSSITGSI 124

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GV+FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A  M++++V  SY+WFV L
Sbjct: 125 GVIFQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKAMIRNMVVDSYNWFVDL 184

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           V++ R +P ++ L L+DG I+TG +A +  LID +GG+ E+   L + GVD  +  + DW
Sbjct: 185 VADRRKLPREEALKLADGTIFTGRQALQAKLIDTIGGEPEIRAYLKSRGVDADLPMV-DW 243

Query: 253 NPPKNYWFCDLKNLS 267
           +   N  F     +S
Sbjct: 244 DKKSNTPFLLAGAVS 258


>gi|237722788|ref|ZP_04553269.1| protease IV [Bacteroides sp. 2_2_4]
 gi|293371818|ref|ZP_06618228.1| signal peptide peptidase SppA, 67K type [Bacteroides ovatus SD CMC
           3f]
 gi|229447310|gb|EEO53101.1| protease IV [Bacteroides sp. 2_2_4]
 gi|292633270|gb|EFF51841.1| signal peptide peptidase SppA, 67K type [Bacteroides ovatus SD CMC
           3f]
          Length = 592

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 126/246 (51%), Gaps = 13/246 (5%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
             + +   VA     G+I D              ++I  + ++  +D   A+++ ++SPG
Sbjct: 301 PKDKSGNIVAVYYASGEITDYPSSATSEDGIVGSKVIRDLRKLKDNDDVKAVVLRVNSPG 360

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           GSA+A E I+ A++++K +KPVI  + + AAS GY ISC ++ IVA  T+L GSIG+   
Sbjct: 361 GSAFASEQIWHAVKELKTKKPVIVSMGDYAASGGYYISCVADTIVAEPTTLTGSIGIFGM 420

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
            P VK   DK+G+S   VK++      +     N     ++Q ++   Y  FV   +E R
Sbjct: 421 IPNVKGLTDKIGLSYDVVKTNKYADFGNIMRPFNEDEKSLLQMMITEGYDTFVTRCAEGR 480

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           ++  +    +++GR+WTG  AK++GL+D +GG ++      A    +    +  +   ++
Sbjct: 481 HMTKEAIEKIAEGRVWTGETAKELGLVDELGGIDKALDIAVAKAGIEG-YTVVSYPEKQD 539

Query: 258 YWFCDL 263
           +    L
Sbjct: 540 FLSSLL 545



 Score =  107 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 98/264 (37%), Gaps = 26/264 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49
             ++S+VTL  +  +  +        V  + + G +                        
Sbjct: 22  LFIISMVTLFGIMSASDTETIVKKNSVMMLDLNGTLVERTQEDPLDILSQLLGDGSNTYG 81

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
             +++  I++   +++   + +  +S G S  + + I  A+   K     +    +    
Sbjct: 82  LDDILSSIQKAKENENIKGIYLQANSLGTSYASLQEIRNALLDFKESGKFVIAYADSYTQ 141

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y +S A++ ++     ++   G+     + K  L K+GV ++  K    K+   PF  
Sbjct: 142 GLYYLSSAADKVLLNPKGMIEWRGIASAPLFYKDLLQKIGVEMQVFKVGTYKSAVEPFIA 201

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225
           +E++P   + +   + S +      VS SRNI  D   V +D     +   E+ K GL D
Sbjct: 202 TEMSPANREQVTTFITSIWGQVTEGVSTSRNISVDSLNVYADRMLMFYPAEESVKCGLAD 261

Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249
            +  + +V   L  L        +
Sbjct: 262 TLIYRNDVRNYLKKLVEINEDDNL 285


>gi|313204613|ref|YP_004043270.1| signal peptide peptidase a [Paludibacter propionicigenes WB4]
 gi|312443929|gb|ADQ80285.1| signal peptide peptidase A [Paludibacter propionicigenes WB4]
          Length = 587

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 145/275 (52%), Gaps = 13/275 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS 75
                  + + +   VA I   G+I D       ++++++ I  +++D +  A+++ +SS
Sbjct: 295 AMSKLPDNSKYDKNKVAVIYAIGEITDTEGDEIVARDMVKTINDVAKDSAVKAVVLRVSS 354

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           PGGSAYA E I+ A+  +K +KP+I  + + AAS GY ISC ++ I+A   ++ GSIG+ 
Sbjct: 355 PGGSAYASEQIWHALSMLKAKKPLIVSMGDYAASGGYYISCLADKIIAQPNTITGSIGIF 414

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
              P +K   +KLG++   VK++ M    S      P+   +MQ+ V+  Y  FV+  ++
Sbjct: 415 GAIPNIKGLNEKLGLTYDGVKTNKMSDGISINRSFTPEERDLMQNYVNRGYELFVKRCAQ 474

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
            R +  ++   +++GR+WTG +A K+GL+D +GG  +  +         S   +K++   
Sbjct: 475 GRKMKVEQIKAIAEGRVWTGEDAIKIGLVDKIGGLNDAIKLAVDKAKLSS-YNLKEYPEK 533

Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
           +++    L      SL ED    + + ++   +++
Sbjct: 534 EDFTAKLL-----KSLTEDVEARVMEAQLGEQYSI 563



 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 106/280 (37%), Gaps = 34/280 (12%)

Query: 1   MEFVLKKIKTRYV------MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED----- 49
           ++F L  I   ++      ++  + L     S        S  +  + + G + D     
Sbjct: 5   LKFTLASIVGIFITSLLGVLIFFIVLGAAASSGEKTTVLKSNSIYELDLEGSLVDRSEDN 64

Query: 50  -------------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
                                E+++ IE+   DD+   + +   S  G   + + I  A+
Sbjct: 65  PFSNVLGKALGSSSENSLGLDEVLKNIEKAKNDDNIVGIYLKGGSLSGGIASVKEIRNAL 124

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
              K     I    +  +   Y +   +N I+     ++   G+  +  ++K  LDKLG+
Sbjct: 125 IDFKKSGKFIVAYADNYSQKMYYLVSVANKILINPQGMLELKGLSTETMFLKNTLDKLGI 184

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
            ++ VK    K+   P+  ++++      +   ++S ++  ++ +S SR IP +K    +
Sbjct: 185 EMQIVKVGTFKSAVEPYILTKMSDANRLQVNVFLNSIWNTILKEISASRKIPTEKLNSYA 244

Query: 209 DGRIWT--GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
           D  +      ++K+  L+D +   ++V   L     D   
Sbjct: 245 DEMMMYQPTEKSKQYNLVDSLVYADQVDSILQKYVKDFKK 284


>gi|330878257|gb|EGH12406.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 332

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 121/291 (41%), Gaps = 18/291 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61
             K   V    V + +   ++       S H A I ++G I D     ++ +   +    
Sbjct: 49  FFKLLTVAFLFVAIVLPMLNFEGGASRRSSHTALIDVQGVIADKESASAENITTALRDAF 108

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118
            D+    +I+ ++SPGGS      ++  I++++  KP I     +    AS  Y I+ A+
Sbjct: 109 GDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAEKPNIKVYAVITDLGASGAYYIASAA 168

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I A + SLVGSIGV          ++KLGV  ++  S   KA   PF        Q  
Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMEKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Q V+D+++  F+  V + R           +  G IWTG +   +GL+D +G    V + 
Sbjct: 229 QSVLDTTHRQFIASVKQGRGDRLKDKDHPEMFSGLIWTGEQGVALGLVDGLGSASYVARE 288

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +         + I ++   ++ +    K L  S  + + I ++       L
Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFGGPSL 331


>gi|260175077|ref|ZP_05761489.1| protease IV [Bacteroides sp. D2]
 gi|299147649|ref|ZP_07040713.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 3_1_23]
 gi|315923305|ref|ZP_07919545.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|298514436|gb|EFI38321.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 3_1_23]
 gi|313697180|gb|EFS34015.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 592

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 126/246 (51%), Gaps = 13/246 (5%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
             + +   VA     G+I D              ++I  + ++  +D   A+++ ++SPG
Sbjct: 301 PKDKSGNIVAVYYASGEITDYPSSATSEDGIVGSKVIRDLRKLKDNDDVKAVVLRVNSPG 360

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           GSA+A E I+ A++++K +KPVI  + + AAS GY ISC ++ IVA  T+L GSIG+   
Sbjct: 361 GSAFASEQIWHAVKELKTKKPVIVSMGDYAASGGYYISCVADTIVAEPTTLTGSIGIFGM 420

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
            P VK   DK+G+S   VK++      +     N     ++Q ++   Y  FV   +E R
Sbjct: 421 IPNVKGLTDKIGLSYDVVKTNKFADFGNIMRPFNEDEKSLLQMMITEGYDTFVTRCAEGR 480

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           ++  +    +++GR+WTG  AK++GL+D +GG ++      A    +    +  +   ++
Sbjct: 481 HMTKEAIEKIAEGRVWTGETAKELGLVDELGGIDKALDIAVAKAGIEG-YTVVSYPEKQD 539

Query: 258 YWFCDL 263
           +    L
Sbjct: 540 FLSSLL 545



 Score =  107 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 98/264 (37%), Gaps = 26/264 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49
             ++S+VTL  +  +  +        V  + + G +                        
Sbjct: 22  LFIISMVTLFGIMSASDTETIVKKNSVMMLDLNGTLVERTQEDPLGILSQLLGDGSNTYG 81

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
             +++  I++   +++   + +  +S G S  + + I  A+   K     +    +    
Sbjct: 82  LDDILSSIQKAKENENIKGIYLQANSLGTSYASLQEIRNALLDFKESGKFVIAYADSYTQ 141

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y +S A++ ++     ++   G+     + K  L K+GV ++  K    K+   PF  
Sbjct: 142 GLYYLSSAADKVLLNPKGMIEWRGIASAPLFYKDLLQKIGVEMQVFKVGTYKSAVEPFIA 201

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225
           +E++P   + +   + S +      VS SRNI  D   V +D     +   E+ K GL D
Sbjct: 202 TEMSPANREQVTTFITSIWGQVTEGVSTSRNISVDSLNVYADRMLMFYPAEESVKCGLAD 261

Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249
            +  + +V   L  L        +
Sbjct: 262 TLIYRNDVRNYLKKLVEINEDDNL 285


>gi|182415685|ref|YP_001820751.1| signal peptide peptidase SppA, 67K type [Opitutus terrae PB90-1]
 gi|177842899|gb|ACB77151.1| signal peptide peptidase SppA, 67K type [Opitutus terrae PB90-1]
          Length = 656

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 113/241 (46%), Gaps = 10/241 (4%)

Query: 32  EDNSPHVARIAIRGQIEDSQ----------ELIERIERISRDDSATALIVSLSSPGGSAY 81
              S  VA +   G I D +               + R+ +DDS  A+++ ++SPGGSA 
Sbjct: 364 SSRSGRVAVVYAEGDIVDGEGNEQGEIGGTRFSRELRRLRQDDSVKAIVLRVNSPGGSAS 423

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
           A E I R I+  +  KPVI  +   AAS GY IS   + I A  T++ GSIGV      V
Sbjct: 424 ASETIQREIRLAREVKPVIVSMGSYAASGGYWISAYGDRIFAEPTTVTGSIGVFGIMFDV 483

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
           +   +  G++  SVK+       +      P+ + + Q  VD  Y  FV  V E R++  
Sbjct: 484 QKLFNGWGLTFDSVKTGRFADTLTIARPKTPEEMALFQRSVDWIYDQFVSKVVEGRHLAR 543

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
           +    ++ GR+W+G EAKK+GL+D +GG +   +         S  ++ ++   K +   
Sbjct: 544 EHVEEIAQGRVWSGVEAKKLGLVDELGGLDAAIRYAAGRAGLGSDYRLVEYPRKKEFAEA 603

Query: 262 D 262
            
Sbjct: 604 L 604



 Score = 80.8 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 93/254 (36%), Gaps = 11/254 (4%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGE--AIFRAIQKVKNRKPVITEVHEMAA 108
           + +   +   ++DD    + +    P G    G    +  A+ + K     +      A 
Sbjct: 80  RTVTRTLRAAAKDDRIAGIFIFGDVPAGGPGYGALKEVRAALNQFKASGKPVKAYLTYAT 139

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167
           +  Y ++  ++ +       +   G+  Q  ++    +K G+ ++  +    K+   PF 
Sbjct: 140 TKNYYLASVADELTIDPYGTIIMPGLASQPMFLAGAFEKYGIGVQVTRVGKYKSAVEPFT 199

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GAEAKKVGLID 225
            ++++P+    +Q ++D  +   +R ++ SR +  +      D         AK   L+D
Sbjct: 200 RTDMSPENRAQIQKLLDDVWAGLLRDMAGSRKLKSNAIQATVDAEGLIRADAAKAANLVD 259

Query: 226 VVGGQEEVWQSLYALGVDQSIRK------IKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
            +  ++E+   L  +    + ++      + D++         L+ +  +  +E+     
Sbjct: 260 RIAYRDEIIGELKRITGRDNSKESFKQIGLVDYSKVAKDQPPPLRTMKPADRVEELAKTE 319

Query: 280 KQTKVQGLWAVWNP 293
                +   A   P
Sbjct: 320 GDASAKPAVATKTP 333


>gi|213962885|ref|ZP_03391145.1| signal peptide peptidase SppA, 67K type [Capnocytophaga sputigena
           Capno]
 gi|213954542|gb|EEB65864.1| signal peptide peptidase SppA, 67K type [Capnocytophaga sputigena
           Capno]
          Length = 590

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 110/266 (41%), Gaps = 11/266 (4%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLS 74
                +        +A I   G+I           ++ +I  + + +      A+++ ++
Sbjct: 296 AVVGKATEHKTKDKIAVIYADGEIMQGEGRAEVVGNETIIRALRKAADKKEVKAIVLRIN 355

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGG A A E + R I+  K +K V   +   AAS GY I+C +N I A E ++ GSIGV
Sbjct: 356 SPGGDALASELMHREIEITKKKKKVYVSMGNYAASGGYYIACNANRIFAEEGTITGSIGV 415

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
               P V       G++ ++V + P     S + +   +  + M + ++  Y  F+  V+
Sbjct: 416 FGVIPNVNALATNWGITAETVSTHPNAQWYSLYQKPTEQFRKEMTESIEQVYTVFLDRVA 475

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD--W 252
           + R     +   ++ GR+W+G EA   GL+D +G   +           +  R I    +
Sbjct: 476 QGRGKTVAQIDSIAQGRVWSGKEALANGLVDELGSLNDAIAYAAKDNGLKEYRTISYPVF 535

Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPL 278
                  F         + L D + +
Sbjct: 536 EMDFKTMFRRFGAQLRGNNLRDEMGV 561



 Score = 90.4 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 98/274 (35%), Gaps = 25/274 (9%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTV---VYFSWSSHVEDNSPHVARIAIRGQIED-------- 49
           + F +       + L  +++ +   V  S    +      V  +A    + D        
Sbjct: 12  LGFFISMGICLLLFLVFISVMIGSVVGSSSGEEITVKDNSVLELAFNEPLTDYGERVSFK 71

Query: 50  -----------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
                          ++ I+    D     + +  +   G     + + +A+   K    
Sbjct: 72  DFDYTSQSYNGLNTTLKAIQNAKIDKRIKGIYLKSTGNIGGLAFAQELRKALIDFKTSGK 131

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            +   ++  +   Y +   ++ I  ++   V   G+  +  + K   +K GV ++ ++  
Sbjct: 132 FVLAYNDEISQLDYYLQSVADKIYISQLGSVALRGLSSEVLFFKGLQEKTGVQMEVIRHG 191

Query: 159 PMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTG 215
             K+   PF +  ++      +  ++++ +      +S+SRNI  +K   ++        
Sbjct: 192 KYKSAVEPFLDNKMSDNNRLQISQLLNAMWGVIAADISQSRNISVEKLNEIATNVNGRNA 251

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
             AK  GL+D +  ++E  + +      +SI K+
Sbjct: 252 QLAKNNGLVDDILYRDEFEKIICDKTGSKSIDKV 285


>gi|254410663|ref|ZP_05024442.1| signal peptide peptidase SppA, 67K type [Microcoleus chthonoplastes
           PCC 7420]
 gi|196182869|gb|EDX77854.1| signal peptide peptidase SppA, 67K type [Microcoleus chthonoplastes
           PCC 7420]
          Length = 593

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 66/247 (26%), Positives = 123/247 (49%), Gaps = 9/247 (3%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGS 79
            H   +   +A +   G+I D +             ++ ++  DDS  A+++ ++SPGGS
Sbjct: 299 EHQRASKNKIAVLYASGEIVDGEGSVQEVGGESFAAQMRKLRLDDSVKAVVLRVNSPGGS 358

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           A A E I R ++  ++ KPVI  + ++AAS GY IS   N I A   ++ GSIGV     
Sbjct: 359 ATASEIIQREVKLTRDSKPVIISMGDIAASGGYWISTYGNRIFAEPNTVTGSIGVFGLLM 418

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            V+   ++ G++   VK+       +       + + ++Q +VD  Y  F+  V+ESR +
Sbjct: 419 NVQQIANENGITWDVVKTGRFADTQTVSRPKTTQELALIQKIVDQVYSKFLDKVAESRKL 478

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           P DK   ++ GR+W+G +AK++GL+D +GG ++  +            K++++   +   
Sbjct: 479 PKDKVAQIAQGRVWSGIDAKQLGLVDEIGGLDDAIEYAVKEANLGEDWKLEEYPRFQTLE 538

Query: 260 FCDLKNL 266
              ++  
Sbjct: 539 ERLIEEF 545



 Score = 83.5 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 97/272 (35%), Gaps = 31/272 (11%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------- 51
           +      + LV+L +   S  +  +     V    +   + D+                 
Sbjct: 10  LFFGIGTVGLVSLIITAASRDTGPQVKDKSVLVFDLSLTVRDTDPTSSTSRAIEEALSGE 69

Query: 52  --------ELIERIERISRDDSATALIVSLS----SPGGSAYAGEAIFRAIQKVKNRKPV 99
                   ++I+ +   + D    AL +  S    S G      + +  A+++ K     
Sbjct: 70  ETDTITLRKVIDTLNTAAEDSRIVALYLDGSQTSTSSGTGFATLKEVREALERFKESGKK 129

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
           I      +    Y +S  ++ IV      +   G   Q  +    L+K G+ I+ ++   
Sbjct: 130 IIAYDVDSGEGEYYLSSIADTIVLNPMGSLEMNGFSSQPMFFTGALEKFGIGIQVIRVGK 189

Query: 160 MKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216
            K+   PF   E++ +  Q MQ ++   +  F   V +SR +   +   ++D   I   +
Sbjct: 190 YKSAVEPFVLKELSQENRQQMQALLGDLWTEFRTTVGKSRQVTPQELQAIADTQGIVLAS 249

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           +A    L+D VG  +EV   L  L  +    K
Sbjct: 250 DAIGRRLVDKVGYYDEVIAQLQELTGESETEK 281


>gi|332886098|gb|EGK06342.1| signal peptide peptidase SppA, 67K type [Dysgonomonas mossii DSM
           22836]
          Length = 584

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/267 (26%), Positives = 130/267 (48%), Gaps = 9/267 (3%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------SQELIERIERISRDDSATA 68
           + ++  +         ++   +A +   G I +         +  ++ IE++  +D   A
Sbjct: 285 MASIKDMTSVSFVKESNSKDVIAILYAEGSINNGSGKDGITDKRYVKEIEKLKDNDKVKA 344

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           ++  ++SPGGSAYA E I++AI  +K +KPV+  + + AAS GY I+C ++ I+A   +L
Sbjct: 345 VVFRVNSPGGSAYASEQIWKAITDLKAKKPVVVSMGDYAASGGYYIACNASKIIAQPNTL 404

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIG+   +P  +    K+G+S  +VK++           + P+   ++Q  ++  Y  
Sbjct: 405 TGSIGIFGMFPNFEGLTKKVGLSFDNVKTNKFADFGDATRPMRPEEKVILQQYIEHGYDL 464

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           F+   SE RNIP D    ++ GR+WTG +A K+GL+D +G  +   Q    L        
Sbjct: 465 FLTRCSEGRNIPKDSLDHIAQGRVWTGNQALKIGLVDALGNIDTAIQEAAKLAKL-DDYS 523

Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDT 275
           ++D+    ++    L N       +  
Sbjct: 524 LQDYPKKVDFLESLLSNQKEEFATKAM 550



 Score = 95.8 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 92/254 (36%), Gaps = 24/254 (9%)

Query: 21  TVVYFSWSSHVEDNSPHVARIAIRGQI--------------------EDSQELIERIERI 60
             + F  S         V  + + G +                        +++  I++ 
Sbjct: 31  AAMSFGSSDKYNLKDNTVLTLKLEGTLSERVEPNSFLDLIGQNTDLEIGLDDILSSIKKA 90

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
             +D+   + ++  +   S  + + I   +   K     I    ++ +   Y +S  ++ 
Sbjct: 91  KENDNIKGIYINAGAFAASNASLKEIRDQLADFKESGKFIIAYADVYSQGCYYLSSVADK 150

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVNPKAVQMM 178
           ++      +   G+     + K  LDK+G+ ++  K    K+   PF   +++    + +
Sbjct: 151 VIMNPQGNLDLHGLSSSPTFYKGLLDKIGIEMQIFKVGTFKSAVEPFMLDKMSDANREQV 210

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSD--GRIWTGAEAKKVGLIDVVGGQEEVWQS 236
              ++  +      +S+SR I  DK   L+D          +   GL+D +  + EV + 
Sbjct: 211 TAYINDIWSTITSEISDSRKISVDKINQLTDSLQTFKLANASVTDGLVDTLMYETEVKEY 270

Query: 237 LYALGVDQSIRKIK 250
           L  L   + ++ ++
Sbjct: 271 LKDLLKVEKVKDVR 284


>gi|160890040|ref|ZP_02071043.1| hypothetical protein BACUNI_02479 [Bacteroides uniformis ATCC 8492]
 gi|317481508|ref|ZP_07940572.1| signal peptide peptidase SppA [Bacteroides sp. 4_1_36]
 gi|156860428|gb|EDO53859.1| hypothetical protein BACUNI_02479 [Bacteroides uniformis ATCC 8492]
 gi|316902325|gb|EFV24215.1| signal peptide peptidase SppA [Bacteroides sp. 4_1_36]
          Length = 589

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 131/270 (48%), Gaps = 13/270 (4%)

Query: 30  HVEDNSPHVARIAIRGQI------------EDSQELIERIERISRDDSATALIVSLSSPG 77
             + +   +A     G+I             DS+++I+ + ++  D+   A+++ ++SPG
Sbjct: 298 PKDKSGNVIAVYYAYGEIDGGSSSASSEEGIDSKKVIKDLRKLKDDEDVKAVVLRVNSPG 357

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           GSAY  E I+ A+ ++K  KPVI  + + AAS GY ISC ++ IVA  T+L GSIG+   
Sbjct: 358 GSAYGSEQIWYAVSELKKEKPVIVSMGDYAASGGYYISCNADTIVAEPTTLTGSIGIFGM 417

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +P  K   DK+GV+   VK++           +N     +MQ  V++ Y  F+   S+ R
Sbjct: 418 FPNAKGLTDKIGVNFDVVKTNKYADFGMLTRPMNDGEKGLMQMYVNNGYDLFLTRCSDGR 477

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
            I  +    ++ GR+WTG++AK++GL+D +GG ++      A         +  +   ++
Sbjct: 478 GISKEDLDKIAQGRVWTGSKAKELGLVDELGGLDKALDIAIAKAGV-DAYTVMSYPKKES 536

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           ++   +     + +    +        Q  
Sbjct: 537 FFESLMNTNPGNYIKARMLKGTMGEIYQQF 566



 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 106/281 (37%), Gaps = 33/281 (11%)

Query: 1   MEFVLKK-------IKTRYVMLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQIE-- 48
           M+  LK        I    V+L  +++ VV+   SS   +       +  + + G +   
Sbjct: 1   MKDFLKFTFATITGIIVSVVVLVFISILVVFSMVSSSESETQVRKNSIMMLDLNGALAER 60

Query: 49  -----------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
                               +++  I++   +D    + +  +S G    + E I  A++
Sbjct: 61  SQDNPFDALMGDNYKTYGLDDILSSIKKAKENDDIKGIYIEATSLGAGFASREEIRNALK 120

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
             K     I    +  +   Y +S  ++ ++     +V   G+     + K  L K+GV 
Sbjct: 121 DFKESGKFIVAYGDSYSQGLYYLSSIADKVLLNPQGMVEWRGLAATPMFFKDLLAKIGVE 180

Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           ++  K    K+   PF  +E++P   + +   + S +      V+ESR I  D    ++D
Sbjct: 181 MQIFKVGTYKSAVEPFISTEMSPANREQIDAYLTSIWGQVTNDVAESRKISVDSLNAIAD 240

Query: 210 G--RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                +   E+ + GL+D +  + +V   L A+       +
Sbjct: 241 RMLMFYPAEESVQCGLVDTLIYKNDVRNYLKAMVGIDKDDR 281


>gi|160884948|ref|ZP_02065951.1| hypothetical protein BACOVA_02940 [Bacteroides ovatus ATCC 8483]
 gi|156109298|gb|EDO11043.1| hypothetical protein BACOVA_02940 [Bacteroides ovatus ATCC 8483]
          Length = 592

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 126/246 (51%), Gaps = 13/246 (5%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
             + +   VA     G+I D              ++I  + ++  +D   A+++ ++SPG
Sbjct: 301 PKDKSGNIVAVYYASGEITDYPSSATSEDGIVGSKVIRDLRKLKDNDDVKAVVLRVNSPG 360

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           GSA+A E I+ A++++K +KPVI  + + AAS GY ISC ++ IVA  T+L GSIG+   
Sbjct: 361 GSAFASEQIWHAVKELKTKKPVIVSMGDYAASGGYYISCVADTIVAEPTTLTGSIGIFGM 420

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
            P VK   DK+G+S   VK++      +     N     ++Q ++   Y  FV   +E R
Sbjct: 421 IPNVKGLTDKIGLSYDVVKTNKYADFGNIMRPFNEDEKSLLQMMITEGYDTFVTRCAEGR 480

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           ++  +    +++GR+WTG  AK++GL+D +GG ++      A    +    +  +   ++
Sbjct: 481 HMTKEAIEKIAEGRVWTGETAKELGLVDELGGIDKALDIAVAKAGIEG-YTVVSYPEKQD 539

Query: 258 YWFCDL 263
           +    L
Sbjct: 540 FLSSLL 545



 Score =  107 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 98/264 (37%), Gaps = 26/264 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49
             ++S+VTL  +  +  +        V  + + G +                        
Sbjct: 22  LFIISMVTLFGIMSASDTETIVKKNSVMMLDLNGTLVERTQEDPLGILSQLLGDGSNTYG 81

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
             +++  I++   +++   + +  +S G S  + + I  A+   K     +    +    
Sbjct: 82  LDDILSSIQKAKENENIKGIYLQANSLGTSYASLQEIRNALLDFKESGKFVIAYADSYTQ 141

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y +S A++ ++     ++   G+     + K  L K+GV ++  K    K+   PF  
Sbjct: 142 GLYYLSSAADKVLLNPKGMIEWRGIASAPLFYKDLLQKIGVEMQVFKVGTYKSAVEPFIA 201

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225
           +E++P   + +   + S +      VS SRNI  D   V +D     +   E+ K GL D
Sbjct: 202 TEMSPANREQVTTFITSIWGQVTEGVSTSRNISVDSLNVYADRMLMFYPAEESIKCGLAD 261

Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249
            +  + +V   L  L        +
Sbjct: 262 TLIYRNDVRNYLKKLVEINEDDNL 285


>gi|320449714|ref|YP_004201810.1| signal peptide peptidase SppA [Thermus scotoductus SA-01]
 gi|320149883|gb|ADW21261.1| signal peptide peptidase SppA [Thermus scotoductus SA-01]
          Length = 310

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/256 (29%), Positives = 127/256 (49%), Gaps = 5/256 (1%)

Query: 35  SPHVARIAIRGQIE---DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
              V  + + G I    D ++L+ +I +   D    A ++ + SPGGS    EAI RA++
Sbjct: 44  GEKVVLLEVVGSIPMGKDLEDLLSKIRQAREDQDIRAAVLFVDSPGGSVTETEAIHRALK 103

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
            +   KP++     +AAS GY ++ A+  I    T++ GSIGV+   P V+  L KLGV 
Sbjct: 104 DLAREKPLVAAFGTVAASGGYYVATAAREIFTPATAVTGSIGVIATLPQVQGLLAKLGVQ 163

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
           ++ +K   +K   S    + P+   ++Q  +  +Y  FV  V+E R++P DK   L+DGR
Sbjct: 164 VEVLKEGRLKDMGSGLRPLTPEERTLIQGYMREAYELFVARVAEGRHLPKDKVRQLADGR 223

Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN--LSIS 269
           I++G +A  +GL D  G  E+  +    L   +  R ++   P         +   L +S
Sbjct: 224 IYSGTQAIALGLADREGYLEDAAKRAAELAGLEEFRLVRYEKPKGLLEGLLGEGFPLGLS 283

Query: 270 SLLEDTIPLMKQTKVQ 285
           S  E  + L+ Q + +
Sbjct: 284 SETEQLVSLLGQNRFR 299


>gi|295677195|ref|YP_003605719.1| peptidase S49 [Burkholderia sp. CCGE1002]
 gi|295437038|gb|ADG16208.1| peptidase S49 [Burkholderia sp. CCGE1002]
          Length = 333

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 121/289 (41%), Gaps = 16/289 (5%)

Query: 7   KIKTRYVMLSLVTLTVV--YFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIER 59
           +I  R++ L ++ L V          V     H A ++I G+I      +++++   ++ 
Sbjct: 49  RIFFRFLFLGVLALVVWGALSFSGERVATTGRHTAMVSIDGEIAADSNANAEDVNTALDS 108

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISC 116
              D +   +I+  +SPGGS      I   +++++ + P I     V +M AS GY  + 
Sbjct: 109 AFEDSNTAGVILYCNSPGGSPVQAGIINSEVRRLRGKYPSIPLYVVVGDMCASGGYYAAA 168

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
           A+  I   + S+VGSIGVL         +DKLG+  +   S   K    PFS   PK  +
Sbjct: 169 AAEKIYVDKASIVGSIGVLMDSFGFTGLMDKLGIQRRLHTSGENKGFFDPFSPETPKMDE 228

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
             Q ++D  +  F+  V + R     +T  +  G  WTG ++ ++GL D  G    V + 
Sbjct: 229 HAQAMLDQIHAQFIDAVRQGRGKRLHETPDMFSGLFWTGQKSVELGLADGFGDTNYVARE 288

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           ++          I D+   ++      +    +        +    K+ 
Sbjct: 289 IFK------APDIVDYTVKESITDRVARKFGAAVGASAVRAMALGAKIN 331


>gi|224536205|ref|ZP_03676744.1| hypothetical protein BACCELL_01072 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522189|gb|EEF91294.1| hypothetical protein BACCELL_01072 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 589

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 129/270 (47%), Gaps = 13/270 (4%)

Query: 30  HVEDNSPHVARIAIRGQI------------EDSQELIERIERISRDDSATALIVSLSSPG 77
             + +   VA     G I             +S ++I  + ++  D    A+++ ++SPG
Sbjct: 298 PKDKSGNIVAVYYAYGAIDSGSSYAGSEDGINSDKVIRDLRKLKDDKDVKAVVLRVNSPG 357

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           GSA+  E I+ A+ ++K  KPVI  + + AAS GY ISC ++ IVA  T+L GSIG+   
Sbjct: 358 GSAFGSEQIWYAVTELKKEKPVIVSMGDYAASGGYYISCNADSIVADPTTLTGSIGIFGM 417

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +P VK   DK+G+S   VK++      +    +N     +MQ++V+  Y  FV+  +E R
Sbjct: 418 FPNVKGLTDKIGLSFDVVKTNTYADFGAMGRPLNDGEKALMQNMVNEGYELFVKRCAEGR 477

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
            +  D+   +++GR+WTG +AK++GL+D +GG ++  +             +  +   K+
Sbjct: 478 GMTTDEIKKIAEGRVWTGTKAKELGLVDELGGLDKALEIAIEKAGL-DAYTVMSYPGKKS 536

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           ++           +    +           
Sbjct: 537 FFDMLTDTKPGGYIQSRILKGKVGELYNQF 566



 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 96/259 (37%), Gaps = 23/259 (8%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQE 52
              +S++ L  +  S  S  +     V  + +RG +                       +
Sbjct: 22  LFFVSILILFSMLSSSESETQVRKNSVMMLDMRGMLSERSQDNPFDIFLSEDETTYGLDD 81

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++  I++   +++   + +   S G    + E I +A+   K     +    +  +   Y
Sbjct: 82  ILSSIQKAKENENIKGIYLQAGSMGIGFASLEEIRKALADFKTSGKFVVAYGDQYSQRLY 141

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEV 170
            ++  ++ ++      +G  G+     + K  L K+GV ++  K    K+   PF  +E+
Sbjct: 142 YLASVADKVLLNPQGAIGWYGLASTPTFYKDLLSKIGVEMQVFKVGTYKSAVEPFISTEM 201

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLIDVVG 228
           +P   + +   +D  +   +  +SESR +  +K    +D     +   +  + GL D + 
Sbjct: 202 SPANREQVTVFLDGIWGQMLSDISESRGVSKEKLNEAADKMLMFYPANDCVEYGLADTLV 261

Query: 229 GQEEVWQSLYALGVDQSIR 247
            + +V   L  +       
Sbjct: 262 YKNDVRNYLKTMVGIDKDD 280


>gi|329957885|ref|ZP_08298360.1| signal peptide peptidase SppA [Bacteroides clarus YIT 12056]
 gi|328522762|gb|EGF49871.1| signal peptide peptidase SppA [Bacteroides clarus YIT 12056]
          Length = 588

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 128/245 (52%), Gaps = 12/245 (4%)

Query: 30  HVEDNSPHVARIAIRGQI-----------EDSQELIERIERISRDDSATALIVSLSSPGG 78
             + +   +A     G+I            +S+++I+ + ++  D++  A+++ ++SPGG
Sbjct: 298 PRDKSGNVIAVYYAYGEIDGGSSASTDEGINSEKVIKDLRKLKDDENVKAVVLRVNSPGG 357

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           SAY  E I+ A+ ++K  KPVI  + + AAS GY I+C ++ IVA  T+L GSIG+    
Sbjct: 358 SAYGSEQIWYAVNQLKKEKPVIVSMGDYAASGGYYIACNADTIVAEPTTLTGSIGIFGMM 417

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P  K   +KLGV+   VK++P     +    +N     +MQ  V+  Y  F+   S+ R 
Sbjct: 418 PNAKGLTEKLGVNFDVVKTNPYADFGNLTRPMNDGEKGLMQMYVNKGYELFLTRCSDGRG 477

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           I  ++   ++ GR+WTG+ AK++GL+D +GG ++  +   A         + ++   + +
Sbjct: 478 ISMEELDKIAQGRVWTGSTAKELGLVDELGGLDKALEIAIAKAGV-DAYTVMNYPKKEGF 536

Query: 259 WFCDL 263
               +
Sbjct: 537 LESLM 541



 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 103/280 (36%), Gaps = 33/280 (11%)

Query: 1   MEFVLKK-------IKTRYVMLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQIE-- 48
           M+  LK        I    V+L  +++ VV+   SS   +       V  + + G +   
Sbjct: 1   MKDFLKFTLATVTGIIISSVVLFFISILVVFSMVSSSESETQVRKNSVMMLDLNGTLTER 60

Query: 49  -----------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
                               +++  I +   ++    + +  +S G    + E I  A++
Sbjct: 61  SQENPLDFLMKEDYKTYGLDDILSSIRKAKENEDIKGIYIQATSLGAGFASLEEIRDALK 120

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
             K     I    +      Y +S  ++ ++     ++   G+     + K  L+K+GV 
Sbjct: 121 DFKESGKFIVAYGDTYTQNLYYLSSVADKVLLNPQGMLEWRGLAATPMFFKDLLEKIGVE 180

Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           ++  K    K+   PF  +E++P   + +   + S +      V+ESRN+  +     +D
Sbjct: 181 MQIFKVGTYKSAVEPFISTEMSPANREQVNVYLSSIWGQITSSVAESRNLSVEALNKEAD 240

Query: 210 G--RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
                +   E+ K GL+D +  + +V   L  +       
Sbjct: 241 RMLMFYPAEESVKNGLVDTLIYKNDVRDYLKNMVGIDKDD 280


>gi|15827982|ref|NP_302245.1| protease IV, signal peptide peptidase [Mycobacterium leprae TN]
 gi|221230459|ref|YP_002503875.1| protease IV, signal peptide peptidase [Mycobacterium leprae Br4923]
 gi|2344854|emb|CAB11456.1| endopeptidase IV [Mycobacterium leprae]
 gi|13093535|emb|CAC30793.1| protease IV, signal peptide peptidase [Mycobacterium leprae]
 gi|219933566|emb|CAR71935.1| protease IV, signal peptide peptidase [Mycobacterium leprae Br4923]
          Length = 602

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/276 (24%), Positives = 125/276 (45%), Gaps = 21/276 (7%)

Query: 34  NSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALIVSLSSPG 77
           + P V  + + G I                     +   +  ++ DDS +A+++ ++SPG
Sbjct: 307 SKPTVVVVTLEGPIVNGRGGPQFLPFGISTGGGDTIAAALREVAADDSVSAIVLRVNSPG 366

Query: 78  GSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GS  A E I+R +++ ++R KPV+  +  +AAS GY +S  ++ IVA   ++ GSIGV+ 
Sbjct: 367 GSVTASETIWREVKRARDRGKPVVVSMGAVAASGGYYVSVGADEIVANPGTITGSIGVIT 426

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
               ++    +LGV   +V+++      S      P+     +   D  Y  F+  V+E 
Sbjct: 427 GKLVIRDLKGRLGVGSDTVRTNANADAWSANVPFTPEQHTHREAEADLCYADFLERVAEG 486

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R +  D    ++ GRIWTGA+A + GL+D +GG     +    L    +   ++  + P 
Sbjct: 487 RGMTTDAVDDVARGRIWTGADALERGLVDELGGLVTAVRRAKVLAGLDADVDVRIVSYPG 546

Query: 257 NYWFCD----LKNLSISSLLEDTIPLMKQTKVQGLW 288
           +           +   ++ L D +  +    V G+ 
Sbjct: 547 SSLLDMVRPRASSQPGAASLPDAVATLLGRSVAGIL 582



 Score = 77.7 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 77/209 (36%), Gaps = 2/209 (0%)

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           D     +I  +        A + +  A+      KP +        +  Y ++ A   + 
Sbjct: 77  DPRVAGMIARVQLGASPPAAVQELREAVATFSAVKPSLAWAETYPGTLSYYLASAFGEVW 136

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQD 180
              +  VG +G      +++  L K+G+  + V     K+  + F+E        + +  
Sbjct: 137 MQPSGSVGLVGFASNATFLRDVLAKVGIEAQFVARGEYKSAANLFTEGGFTDAHREAVSR 196

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +++S      + ++ESR I       L+D       +A   GL+D +G ++E +  +  L
Sbjct: 197 MLESLQGQVWQGIAESRRIDPAALNPLADRAPLLRDDAVASGLVDRIGFRDEAYARIAEL 256

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
              +SI         +      L  L +S
Sbjct: 257 VGAESITPNSSEPQARTEANDGLPRLYLS 285


>gi|269925543|ref|YP_003322166.1| signal peptide peptidase SppA, 36K type [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269789203|gb|ACZ41344.1| signal peptide peptidase SppA, 36K type [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 339

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/273 (26%), Positives = 137/273 (50%), Gaps = 18/273 (6%)

Query: 37  HVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
            +A I + G I++S           + L   +++   D    A+I+ + SPGG   A + 
Sbjct: 69  KIAIIPVTGTIQESAGGFTTSAATPESLKAMLDQAENDSKVKAIILEVDSPGGEVVASDE 128

Query: 86  IFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           ++R I   K R  KPV+  +   AAS  Y IS A++ IVA   +L GS+GV+ +Y     
Sbjct: 129 MYREILDFKQRTRKPVVVRMVSTAASGAYYISMAADKIVANPMTLTGSLGVIMEYMNFSK 188

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
             DK+G+S   ++S   K   +PF +   +  Q++Q +VD +Y+ FV ++++ R +P  +
Sbjct: 189 AADKVGISQVVIRSGEFKDIGNPFRDPTKEERQILQQLVDEAYNQFVNVIAQGRKMPTSR 248

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              L+DGR+++G +AK++GL+D +G  ++  Q    L   ++  ++  +    +      
Sbjct: 249 VRQLADGRVYSGQQAKQLGLVDELGNLDKAVQVAEQLAGIKNA-QVVRYRHSVSLLSLLS 307

Query: 264 KNLSISSLLEDTIPLMKQTKVQ---GLWAVWNP 293
             L +S+   D + +++         L  ++ P
Sbjct: 308 SRLQMST-EPDAMKILRSAGYDITPRLMYIYRP 339


>gi|118462440|ref|YP_883579.1| signal peptide peptidase SppA, 67K type [Mycobacterium avium 104]
 gi|254776880|ref|ZP_05218396.1| signal peptide peptidase SppA, 67K type [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|118163727|gb|ABK64624.1| signal peptide peptidase SppA, 67K type [Mycobacterium avium 104]
          Length = 595

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 129/288 (44%), Gaps = 32/288 (11%)

Query: 36  PHVARIAIRGQIED----------------SQELIERIERISRDDSATALIVSLSSPGGS 79
           P VA I + G + D                S  +   +   + DD+ +A+++ ++SPGGS
Sbjct: 302 PTVAVINVDGTLVDGRGGPHFLPFGAATVGSDTIAPALREAAADDAVSAIVLRVNSPGGS 361

Query: 80  AYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E ++R +++ + R KPV+  +  +AAS GY +S A++ IVA   ++ GSIGV+   
Sbjct: 362 VTASETLWREVKRARERGKPVVASMGAVAASGGYYVSVAADAIVANPATITGSIGVITGK 421

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             ++  L +LGV   +V+++      S  +   P+     +   D  Y  FV  V+E RN
Sbjct: 422 LVIRDLLGRLGVGSDTVRTNANADAWSIDAPFTPEQRAHREAEADLVYTDFVSRVAEGRN 481

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           +  D    ++ GR+WTGA+A + GL+D +GG     +    L        ++    P   
Sbjct: 482 LTTDAVERVARGRVWTGADAHERGLVDELGGFRIAVRRAKILAGLDEDADVRIVTYPSGS 541

Query: 259 WFCDLK----NLSISSLLEDTIPLM----KQTKVQ-------GLWAVW 291
               L+    +   +  L D +  +        +        G  A+W
Sbjct: 542 LLDVLRPRASSQPAAVSLPDALGALTVKILGAILDNVERSCSGASALW 589



 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 89/245 (36%), Gaps = 6/245 (2%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
              ++ ++ I R + D     LI  +      + A + +  AI      KP +       
Sbjct: 66  ASLRDTVDAIHRAAEDPRVAGLIARVQLAPSPSAAVQELREAIVAFTAAKPSLAWAETYP 125

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPS 165
            +  Y ++ A   I       VG IG      +++  LDK G+  + V     K+     
Sbjct: 126 GTLSYYLASAFGEIWMQPGGSVGLIGFASNATFLRDALDKAGIEAQFVARGEYKSAVNRF 185

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
                     + +  ++DS      + V+ESR +  D    L+D       +A   GL+D
Sbjct: 186 TEHGFTEAHREAVTRMLDSVQEQVWQAVAESRKLDTDALDALADRAPLLRQDALDSGLVD 245

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
            +G +++ +  +  L   Q +    D  PP+ Y        +  S L   +P +   +  
Sbjct: 246 RIGFRDQAYDRIAELVGVQDVSP--DTEPPRLYVSRYAG--AARSRLSPPVPSLPGRRRP 301

Query: 286 GLWAV 290
              AV
Sbjct: 302 PTVAV 306


>gi|41410286|ref|NP_963122.1| hypothetical protein MAP4188 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41399120|gb|AAS06738.1| SppA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 595

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 129/288 (44%), Gaps = 32/288 (11%)

Query: 36  PHVARIAIRGQIED----------------SQELIERIERISRDDSATALIVSLSSPGGS 79
           P VA I + G + D                S  +   +   + DD+ +A+++ ++SPGGS
Sbjct: 302 PTVAVINVDGTLVDGRGGPHFLPFGAATVGSDTIAPALREAAADDAVSAIVLRVNSPGGS 361

Query: 80  AYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E ++R +++ + R KPV+  +  +AAS GY +S A++ IVA   ++ GSIGV+   
Sbjct: 362 VTASETLWREVKRARERGKPVVASMGAVAASGGYYVSVAADAIVANPATITGSIGVITGK 421

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             ++  L +LGV   +V+++      S  +   P+     +   D  Y  FV  V+E RN
Sbjct: 422 LVIRDLLGRLGVGSDTVRTNANADAWSIDAPFTPEQRAHREAEADLVYTDFVSRVAEGRN 481

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           +  D    ++ GR+WTGA+A + GL+D +GG     +    L        ++    P   
Sbjct: 482 LTTDAVERVARGRVWTGADAHERGLVDELGGFRIAVRRAKILAGLDEDADVRIVTYPSGS 541

Query: 259 WFCDLK----NLSISSLLEDTIPLM----KQTKVQ-------GLWAVW 291
               L+    +   +  L D +  +        +        G  A+W
Sbjct: 542 LLDVLRPRASSQPAAVSLPDALGALTVKTLGAILDNVERSCSGASALW 589



 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 89/245 (36%), Gaps = 6/245 (2%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
              ++ ++ I R + D     LI  +      + A + +  AI      KP +       
Sbjct: 66  ASLRDTVDAIHRAAEDPRVAGLIARVQLAPSPSAAVQELREAIVAFTAAKPSLAWAETYP 125

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPS 165
            +  Y ++ A   I       VG IG      +++  LDK G+  + V     K+     
Sbjct: 126 GTLSYYLASAFGEIWMQPGGSVGLIGFASNATFLRDALDKAGIEAQFVARGEYKSAVNRF 185

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
                     + +  ++DS      + V+ESR +  D    L+D       +A   GL+D
Sbjct: 186 TEHGFTEAHREAVTRMLDSVQEQVWQAVAESRKLDTDALDALADRAPLLRQDALDSGLVD 245

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
            +G +++ +  +  L   Q +    D  PP+ Y        +  S L   +P +   +  
Sbjct: 246 RIGFRDQAYDRIAELVGVQDVSP--DTEPPRLYVSRYAG--AARSRLSPPVPSLPGRRRP 301

Query: 286 GLWAV 290
              AV
Sbjct: 302 PTVAV 306


>gi|315225469|ref|ZP_07867282.1| signal peptide peptidase SppA [Capnocytophaga ochracea F0287]
 gi|314944567|gb|EFS96603.1| signal peptide peptidase SppA [Capnocytophaga ochracea F0287]
          Length = 590

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 106/237 (44%), Gaps = 9/237 (3%)

Query: 31  VEDNSPHVARIAIRG---------QIEDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
            + +   +A I   G         +I  ++ +I  + + S +    A+++ ++SPGG A 
Sbjct: 303 GKHSKNKIAVIYADGQIMQGEGRAEIVGNETIIRALRKASDNKDIKAIVLRINSPGGDAL 362

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
           A E + R I+  K +K V   +   AAS GY I+C +N I A   ++ GSIGV    P V
Sbjct: 363 ASELMHREIEVTKKKKKVYVSMGNYAASGGYYIACNANRIFAEAGTITGSIGVFGVIPNV 422

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
                  G++ ++V + P     S F +   +  + M + ++  Y  F+  V++ R    
Sbjct: 423 NALATNWGINAETVSTHPNAQFYSVFQKPTEQFKKEMTESIEQVYTVFLDRVAKGRGKTV 482

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            +   ++ GR+W+G EA   GL+D +G   +           +  R +       ++
Sbjct: 483 AQIDSIAQGRVWSGKEALANGLVDEIGSLNDAIAYAAKDNGLKEYRTVSYPTFEMDF 539



 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 104/274 (37%), Gaps = 25/274 (9%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTV---VYFSWSSHVEDNSPHVARIAIRGQIEDSQE----- 52
           + F +       + L  +++ +   V  +    V      V  ++    + D  E     
Sbjct: 12  LGFFISMGICFILFLIFISVMIGSVVGSAKGEEVSVKDNSVLELSFEEPLVDYGERITFK 71

Query: 53  --------------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
                          ++ IE    D     + +  +   G     + + +A++  K    
Sbjct: 72  DFDYTSESYNGLNATLKAIENAKTDKRIKGIYLKSTGNIGGLAFAQELRKALEDFKTSGK 131

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            +    +  +   Y +   ++ +  ++   V   G+  +  + K   +K GV ++ ++  
Sbjct: 132 FVLAYSDEISQLDYYLQTVADKVYISQLGSVALRGLSSEVLFFKGLQEKSGVQMEVIRHG 191

Query: 159 PMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTG 215
             K+   PF +  ++    + + +++ + ++  V  +++SRNIP +K   ++      T 
Sbjct: 192 KYKSAVEPFLDNKMSDNNRKQLTELLSAMWNVIVTDIAKSRNIPVEKLNEIATNVGGRTA 251

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
             AK  GLID +  ++E  Q +      +SI K+
Sbjct: 252 QLAKNNGLIDGILFRDEFEQIICDKTGSKSIDKV 285


>gi|83748461|ref|ZP_00945483.1| protease IV [Ralstonia solanacearum UW551]
 gi|83724872|gb|EAP72028.1| protease IV [Ralstonia solanacearum UW551]
          Length = 378

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 129/291 (44%), Gaps = 15/291 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60
           +I  R+V L ++   +  F S+      +  H A +++ G+I       ++ +   +E  
Sbjct: 92  RIFFRFVTLGILGGLLYLFASFEGETVGSGRHTAVVSLDGEIAASTNASAENINASLEAA 151

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCA 117
             DD+   +I+ ++SPGGS      I   I++++ +   I     V EM AS GY ++ A
Sbjct: 152 FADDNTAGVILKINSPGGSPVQAGMINDDIRRLRAKHKDIPLYVVVEEMCASGGYYVAAA 211

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           ++ I   + S+VGSIGVL         +DK+GV  + + +   K    PFS V P+  Q 
Sbjct: 212 ADKIYVDKASIVGSIGVLMDGFGFTGLMDKVGVERRLLTAGANKGMLDPFSPVPPQQRQF 271

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
            Q ++D  +  F+ +V + R         L  G  WTG++A ++GL D +G  + V +  
Sbjct: 272 AQAMLDEVHQQFIDVVKQGRGSRLKDDPQLFSGLFWTGSKAVELGLADGIGSADFVAR-- 329

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                      + D+   +N+     +    +        L    +++ L 
Sbjct: 330 ----NVIKAPDMVDYTVKENFAERVARKFGTAMGAGAIKALAATGQLKLLM 376


>gi|239814389|ref|YP_002943299.1| peptidase S49 [Variovorax paradoxus S110]
 gi|239800966|gb|ACS18033.1| peptidase S49 [Variovorax paradoxus S110]
          Length = 347

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/287 (21%), Positives = 122/287 (42%), Gaps = 12/287 (4%)

Query: 6   KKIKTR----YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIER 56
           ++ KT     ++   +  + +     +      + H A + I+G+I +  +     ++  
Sbjct: 61  RRWKTFTRLSWLAFFIFLVWLAMSRSTPSTAKTTAHTAVVEIKGEIANGGDASAEFVVAA 120

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLI 114
           ++    D+ A  +++ ++SPGGS      I   I+++K +  KP+   V E  ASA Y I
Sbjct: 121 MKTAFEDEGAKGIVLLINSPGGSPVQAGIISDEIKRLKAKHKKPIYAVVEETCASAAYYI 180

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I   + S+VGSIGVL         ++K+GV  + + +   K    PFS ++   
Sbjct: 181 AAATDKIFVDKASIVGSIGVLMDGFGFTGVMEKVGVERRLLTAGENKGFLDPFSPMSDAQ 240

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
               Q +++  +  F+ +V   R       T  L  G  W+G +A + GL D +G  + V
Sbjct: 241 RAHAQAMLNQIHTQFINVVKNGRGDRLKLDTPGLFSGLFWSGEQAVEFGLADQLGNVDFV 300

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            + +          +  +        F      +    L+   P ++
Sbjct: 301 AREVIKAEEVTDYTRRDNVAEKLAKKFGAAMGAATVRSLQSATPALR 347


>gi|91773876|ref|YP_566568.1| signal peptide peptidase A [Methanococcoides burtonii DSM 6242]
 gi|91712891|gb|ABE52818.1| signal peptide peptidase, peptidase family S49 [Methanococcoides
           burtonii DSM 6242]
          Length = 410

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 136/286 (47%), Gaps = 14/286 (4%)

Query: 7   KIKTRYVMLSLV--TLTVVYFSWSSHVEDNSPHVARIAIRGQI-----------EDSQEL 53
            I    V++ ++  +  V+Y S+   +      VA I ++G +             S+++
Sbjct: 113 YIAVISVLMLIIGGSFAVIYMSFGGDIYTTDDKVAVIYVQGFMLTGNLPSGFGYATSEDV 172

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGY 112
              + + + DDS  A+++ ++S GGS  A E I   I++V++   PV+  + ++AASA Y
Sbjct: 173 CNSLRKATDDDSVKAIVLRVNSGGGSPVAAEEIVTEIKRVQDMGVPVVISMGDVAASAAY 232

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            IS  +++IVA  ++  GSIGV+  Y     F D+ G+     K    K     +  +  
Sbjct: 233 YISAPADLIVANPSTTTGSIGVISVYTNRSEFYDEEGIEFYVSKLGSFKDVGGDWRGLTS 292

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
           +  + + +VV   Y  F+  V+E+RN+   +   ++DGRI+ G EA+K+GL+D +G   +
Sbjct: 293 EEKEYVDNVVLDVYDLFITSVAENRNMTKSEVKDIADGRIYIGKEAQKIGLVDELGNFYD 352

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278
              +   LG  +    +   N P           ++SS   + +  
Sbjct: 353 AIDAAAELGGIEGEHLVYYINKPSLSSILFGSEETMSSQAAEQLAS 398


>gi|218128954|ref|ZP_03457758.1| hypothetical protein BACEGG_00527 [Bacteroides eggerthii DSM 20697]
 gi|217988917|gb|EEC55234.1| hypothetical protein BACEGG_00527 [Bacteroides eggerthii DSM 20697]
          Length = 588

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 129/245 (52%), Gaps = 12/245 (4%)

Query: 30  HVEDNSPHVARIAIRGQI-----------EDSQELIERIERISRDDSATALIVSLSSPGG 78
             + +   +A     G+I            +S+++I  + ++  D++  A+++ ++SPGG
Sbjct: 298 PKDKSGNVIAVYYAYGEIDGGSSASTEEGINSEKVIRDLRKLKDDENVKAVVLRVNSPGG 357

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           SAY  E I+ A++++K  KPVI  + + AAS GY I+C ++ IVA  T+L GSIG+    
Sbjct: 358 SAYGSEQIWYAVEQLKKEKPVIVSMGDYAASGGYYIACNADTIVAEPTTLTGSIGIFGMM 417

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P  K   +KLG++   VK++P     +    +N     +MQ  V++ Y  F+   S+ R 
Sbjct: 418 PNAKGLTEKLGLNFDVVKTNPYADFGNLTRPMNDGEKGLMQMYVNNGYKLFLTRCSDGRG 477

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           I  ++   ++ GR+WTG+ AK++GL+D +GG ++  +   A         + ++   + +
Sbjct: 478 ISMEELDKIAQGRVWTGSTAKELGLVDELGGLDKALEIAVAKAGV-DAYTVMNYPKKEGF 536

Query: 259 WFCDL 263
               +
Sbjct: 537 LESLM 541



 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 104/281 (37%), Gaps = 33/281 (11%)

Query: 1   MEFVLKK-------IKTRYVMLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQIE-- 48
           M+  LK        I    V+L  +++ VV+   SS   +       V  + + G +   
Sbjct: 1   MKDFLKFTLATVTGIIVSSVVLFFISILVVFSMVSSSESETQVRKNSVMMLDLNGTLAER 60

Query: 49  -----------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
                               +++  I +   +++   + +  +S      + E I  A++
Sbjct: 61  SQENPLDILMKDDYKTYGLDDVLSSIRKAKENENIKGIYIQANSLSAGYASLEEIRHALK 120

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
             K     I    +    + Y +S  ++ ++     ++   G+     + K  L+K+GV 
Sbjct: 121 DFKESGKFIVAYGDSYTQSLYYLSSIADKVMLNPQGMLEWRGLAANPMFFKDLLEKIGVE 180

Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           ++  K    K+   PF  +E++P   + +   + S +      ++ESRN+  +     +D
Sbjct: 181 MQVFKVGTYKSAVEPFIATEMSPANREQVNVYLSSVWGQITGDIAESRNLSVEALNKEAD 240

Query: 210 G--RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                +   E+ K GL+D +  + +V   L  L        
Sbjct: 241 RMLMFYPAEESVKNGLVDTLIYKNDVRDYLKTLVGIDKDDD 281


>gi|237748404|ref|ZP_04578884.1| peptidase U7 family [Oxalobacter formigenes OXCC13]
 gi|229379766|gb|EEO29857.1| peptidase U7 family [Oxalobacter formigenes OXCC13]
          Length = 315

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/274 (25%), Positives = 123/274 (44%), Gaps = 14/274 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIE 58
           +  K+ T  +++ ++         S        H A + IRG I       +  +I+ ++
Sbjct: 30  IFFKLTTIILVIFVIFSIKSLSFSSKETVPVQKHTAMVEIRGTIDSSGNSSAANIIKALD 89

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLIS 115
           +   +  AT +I+ ++SPGGS      I+  I+++      KP+   V E+ AS GY ++
Sbjct: 90  KAYDEPLATGVILKINSPGGSPVQAGMIYDEIRRLREVHPDKPLYVVVEELCASGGYYVA 149

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + SLVGSIGV+     V   + KLGV  + + +   K    PFS   P+ V
Sbjct: 150 AAADKIFVDKASLVGSIGVMINGFGVTGLMQKLGVERRLLTAGEYKGFLDPFSPQTPQQV 209

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           Q  Q +++  +  F+ +V + R     +   +  G ++ G EA K+GL D +G  E V +
Sbjct: 210 QYAQSMLNQIHQQFIEVVRQGRGDRLKENREIYSGLVFLGPEAIKMGLADELGTVESVAR 269

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
            +           I D+   +      LK    S
Sbjct: 270 DVIG------EPVIVDYTEQERLSDRFLKKFGAS 297


>gi|134295145|ref|YP_001118880.1| peptidase S49 [Burkholderia vietnamiensis G4]
 gi|134138302|gb|ABO54045.1| peptidase S49 [Burkholderia vietnamiensis G4]
          Length = 329

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 115/270 (42%), Gaps = 16/270 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIER 59
           KI  R+  L +  L               +  H A + I G+I      +++++   ++ 
Sbjct: 44  KIFFRFAFLGVFALLAFALIDFSGDSKFSSGRHTALVTIDGEIAAGTNANAEDINTALDA 103

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISC 116
              DD    +++ ++SPGGS      ++  I+++      KP+   V ++ AS GY I+ 
Sbjct: 104 AFDDDGTAGVVLRINSPGGSPVQAGMVYDEIRRLRKTYPDKPLYVVVTDICASGGYYIAS 163

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
           A++ I   + S+VGSIGVL         + KLGV  +   S   K    PFS   PK   
Sbjct: 164 AADKIFVDKASIVGSIGVLMDGFGFTGLMSKLGVERRLHTSGENKGFYDPFSPETPKMDA 223

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
             Q ++D  +  F++ V + R     +T  +  G  WTG ++ ++GL D  G  + V + 
Sbjct: 224 HAQALLDQVHAQFIKAVKDGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDTVARD 283

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           +           + D+   ++      +  
Sbjct: 284 VLK------APDLVDYTVKESITNRVARKF 307


>gi|77460384|ref|YP_349891.1| peptidase S49, SppA [Pseudomonas fluorescens Pf0-1]
 gi|77384387|gb|ABA75900.1| putative peptidase [Pseudomonas fluorescens Pf0-1]
          Length = 329

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 124/298 (41%), Gaps = 24/298 (8%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSS------HVEDNSPHVARIAIRGQIED-----SQELI 54
           ++    + +L+ + L V    ++           +  + A I + G I D     +  ++
Sbjct: 39  RRWGIFFKLLTFIYLFVALILFTPLMDMEKSATRSGNYTALIDVTGMIADKEPASADNIV 98

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAG 111
             +     D     +I+ ++SPGGS      ++  I++   +     +   + ++ AS  
Sbjct: 99  GSLRAAFEDKKVKGVILRINSPGGSPVQSGYVYDEIKRLRGLHPDTKLYAVISDLGASGA 158

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I A + SLVGSIGV          ++KLGV  ++  S   KA   PF    
Sbjct: 159 YYIASAADQIYADKASLVGSIGVTAAGYGFVGTMEKLGVERRTYTSGEHKAFLDPFQPQK 218

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGG 229
           P+     Q V+D+++  F+  V + R           L  G +W+G +A  +GLID +G 
Sbjct: 219 PEETAFWQSVLDTTHKQFINSVKQGRGDRLKDKEHPELFSGLVWSGEQALPLGLIDGLGN 278

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
              V + +         +++ D+   ++ +    K L  S  + + + +        L
Sbjct: 279 ASSVARDVIG------EKELVDFTVQESPFDRFSKKLGAS--VAEKLAMWMGFNGPSL 328


>gi|115379446|ref|ZP_01466546.1| signal peptide peptidase SppA, 67K type [Stigmatella aurantiaca
           DW4/3-1]
 gi|310821059|ref|YP_003953417.1| peptidase s49, protease iv [Stigmatella aurantiaca DW4/3-1]
 gi|115363555|gb|EAU62690.1| signal peptide peptidase SppA, 67K type [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394131|gb|ADO71590.1| Peptidase S49, protease IV [Stigmatella aurantiaca DW4/3-1]
          Length = 592

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 120/246 (48%), Gaps = 9/246 (3%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSA 80
             ++    +A +   G+I + +          +   + ++  D+   A+++ ++SPGGSA
Sbjct: 301 RSKEGKNRIAVVYAEGEIVNGEGRPSQTGGDRISRELRKLRLDEDVKAVVLRVNSPGGSA 360

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
            A + I R +   +  KPV+  +   AAS GY IS   + I A  T++ GSIGV    P 
Sbjct: 361 SASDLIQREVIVTRKVKPVVISMGSYAASGGYWISTYGDRIFAQPTTITGSIGVFGMLPN 420

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           V+   +  G++  SV+++ M    +         +  +Q +VD  Y  F+  V+E R +P
Sbjct: 421 VQKLANTHGITFDSVQTAKMANPATLARPKTEAELARIQHMVDRIYEQFLSKVAEGRKLP 480

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
            ++   ++ GR+W+G EA+K+GL+D VGG ++  +         +   +   + PK    
Sbjct: 481 RERVHEIAQGRVWSGEEARKLGLVDEVGGLQDAVKFAAEQAGVGNDYWMDLPDAPKPLLQ 540

Query: 261 CDLKNL 266
             ++++
Sbjct: 541 QLMESM 546



 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 105/286 (36%), Gaps = 39/286 (13%)

Query: 1   MEFVLKKIKTRYVMLSL-------VTLTVVYFSWSSHVEDNSPHVARIAIRGQIED---- 49
           M+  LK      + L +       V L  V  + ++     S  V  + +   + D    
Sbjct: 1   MKDFLKTFFACLIALGIFVAGAFVVLLGFVALAGAAKPSVPSKAVLVMDLDMNLLDHTNK 60

Query: 50  ---SQELIERI-----------------ERISRDDSATALIVSLS-SPGG---SAYAGEA 85
              S+ L   +                 ++ + D+    L +  + +P G      A   
Sbjct: 61  AGPSEILQSALQGEKTRVVALATAVAAVDKAAEDERIVGLFLIGNITPVGYGSGPAALRE 120

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           +  AI + K +KPV+   +       Y ++ A++ +V      +   G++ +  +     
Sbjct: 121 LRAAILRFKAKKPVLAY-NVDWGKHDYYLASAASTLVVNPAGHLEVSGLVSEPVFFADAF 179

Query: 146 DKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            K G+ ++  +    K+   PF  + ++  + + MQ ++D  +  +   V   R  P + 
Sbjct: 180 QKYGIEVQVTRVGRYKSAVEPFILNRMSDPSREQMQKLLDDLWAEWKANVGVDRKQPPEA 239

Query: 204 TLVLSDGR-IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
              ++D + I    EA   GL+D V   +E+ + L  L       K
Sbjct: 240 IQAVADEKGILEPEEALAAGLVDRVAAFDEILEELKTLAGTDDKEK 285


>gi|283785012|ref|YP_003364877.1| protease IV [Citrobacter rodentium ICC168]
 gi|282948466|emb|CBG88055.1| protease IV [Citrobacter rodentium ICC168]
          Length = 618

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
           +   D    VA +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 NTPADTGSSVAVVFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   K   KPV+  +  MAAS GY IS  ++ IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRSELAAAKAAGKPVVVSMGGMAASGGYWISTPASYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+  Q+MQ  +++ Y  F+ LV+ESR 
Sbjct: 439 NTVENSLDSIGVHTDGVATSPLAD-ISMTKALPPEVQQIMQLSIENGYKRFITLVAESRK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        I  +    ++
Sbjct: 498 STPEQVDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHIDYYQSEPSF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + ++S S  +   +P   Q  +    A
Sbjct: 557 FDMVMDSMSGS--VRAMLPQAIQAMLPAPLA 585



 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/308 (15%), Positives = 98/308 (31%), Gaps = 57/308 (18%)

Query: 2   EFVLKKIKTRYVMLSLV------------TLTVVYFSWSSHVEDNSPHVAR----IAIRG 45
            F+    K  + +L+ V             L  V      +   +S  VAR    + I G
Sbjct: 6   RFIAGFFKWTWRLLNFVREMVLNLLFIFLILVGVGIWMQVNNGASSEKVARGALLLDISG 65

Query: 46  QIEDSQ---------------------------ELIERIERISRDDSATALIVSLSSPGG 78
            I D                             +++  I +   D + T +++ L    G
Sbjct: 66  VIVDKPSSTNRLGVIGRQLFGASSDRLQENSLFDIVNTIRQAKDDSNITGIVMDLKDFAG 125

Query: 79  SAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           +     + I +A+++ ++    +  + +  +   Y ++  +N I       V   G    
Sbjct: 126 ADQPSMQYIGKALREFRDSGKPVYAIGDNFSQGQYYLASFANKIWLTPQGSVDLHGFATN 185

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
             Y K  LDKL VS    +    K+   PF   +++P A +     +   +  ++  ++ 
Sbjct: 186 GLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTIAA 245

Query: 196 SRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQEE---VWQSLYALGVDQ 244
           +R I   +           L+     T   A    L+D +    E        +      
Sbjct: 246 NRQITAQQVFPGAQGVLDGLTKVGGDTAKYALDHKLVDALLSSSEMEKALSKAFGWSKSD 305

Query: 245 SIRKIKDW 252
           +  +   +
Sbjct: 306 NNYRAISY 313


>gi|154489868|ref|ZP_02030129.1| hypothetical protein PARMER_00097 [Parabacteroides merdae ATCC
           43184]
 gi|154089310|gb|EDN88354.1| hypothetical protein PARMER_00097 [Parabacteroides merdae ATCC
           43184]
          Length = 591

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 14/246 (5%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIED--------------SQELIERIERISRDDSATAL 69
             S     ++N   +A +   G+I D              S+E+  ++ ++  DD   A+
Sbjct: 292 IVSIKVKEKENKNKIAVLYAEGEIRDEDSSSPFSADEQVISEEMANKLRKLKDDDDVKAV 351

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           +  ++SPGGSAY  E I++ + ++K +KP++  +   AAS GY ISCA+N IVA  T+L 
Sbjct: 352 VFRVNSPGGSAYISEQIWKEVVELKAKKPIVVSMGNYAASGGYYISCAANKIVAERTTLT 411

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV           DK+GV+   VK++           +      ++Q  V+ +Y  F
Sbjct: 412 GSIGVFGVVRNFTGTFDKVGVTTDIVKTNTFADLGDISRPMREDEKALIQRGVEQTYDLF 471

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           +   ++ R +   +   +  GR+WTG +A + GL+D +GG ++  +    L        I
Sbjct: 472 LTRCADGRGMTKAEIDSIGQGRVWTGEQALERGLVDQLGGMDDAIKEAATLAELTDYSVI 531

Query: 250 KDWNPP 255
               P 
Sbjct: 532 VADGPK 537



 Score = 95.4 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 87/260 (33%), Gaps = 23/260 (8%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------------QELIE 55
           +  +         SS  + +   V ++++ G + D                     ++I+
Sbjct: 27  IFFIIGVAASADGSSEYKPDKNTVFKLSLDGVLVDQAVKNPFSELMGESSNQMAVSDVIK 86

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
            I R   +D+   + +   S        EAI R ++  K+    I    +      Y + 
Sbjct: 87  AIRRAKANDNIKGIYLEAGSLSTGFAGIEAIRRELEDFKDSGKFIVSYGDYYTQGAYYLC 146

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVNPK 173
             ++ +       V  +G+  Q  +     +K+GV     K    K+   PF   + +  
Sbjct: 147 SVADSVFLNPQGSVSLVGLASQGLFFTGLAEKIGVEHYIFKVGTYKSAVEPFFLKKFSDA 206

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE--AKKVGLIDVVGGQE 231
             + +   + S +      + +SRNI  D+     +  +  G    A    L D +  + 
Sbjct: 207 NREQLTSFLGSVWGNLTTAIEKSRNISSDELDRYLNEGLAMGQASNAVDYKLADGLRYRY 266

Query: 232 EVWQSLYALGVDQSIRKIKD 251
           EV   +  +       K+K 
Sbjct: 267 EVENCVKEMAGQDVKGKLKT 286


>gi|258645667|ref|ZP_05733136.1| signal peptide peptidase SppA [Dialister invisus DSM 15470]
 gi|260403034|gb|EEW96581.1| signal peptide peptidase SppA [Dialister invisus DSM 15470]
          Length = 315

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/308 (24%), Positives = 140/308 (45%), Gaps = 25/308 (8%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWS----SHVEDNSPHVARIAIRGQI--------- 47
           M+  +KK     + + +++     F       S +     +VA I I G I         
Sbjct: 1   MDSKIKKWIMVMLAVLVISAAAAGFMPEWKKTSAIGKGKDYVAEIRIDGTIYGGPRNGTL 60

Query: 48  ------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVI 100
                   S++++  +E+  +D+    +++ ++SPGGS  A + I   + K+KN  KP++
Sbjct: 61  LGASEGVSSEQVMYEMEQARKDNRVKGVLLRINSPGGSTGATQEIAEEMDKIKNAGKPIV 120

Query: 101 TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160
             + +M ASAGY ++   + + A   +L GSIGV   Y  V+  +DKLGV  + +KS   
Sbjct: 121 VSMGDMCASAGYWLASKGDYVFANPATLTGSIGVYMDYTNVEELMDKLGVKNEKIKSGAH 180

Query: 161 KAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKK 220
           K   S +  +     +M+Q +VD  Y  FV+ V++ R +   +   ++DGRI TG +A +
Sbjct: 181 KDILSMYRPMTGDEQKMLQTMVDDIYSQFVKTVADGRRMEESRVRSVADGRILTGQQAME 240

Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
           +GL+D +G   +       +   +         P K Y         ++  ++  +  + 
Sbjct: 241 LGLVDAMGNYYDALNYAGGVAGIEGDSV-----PVKRYSVGTSWKNILAGEMDSAVRSLA 295

Query: 281 QTKVQGLW 288
           +     +W
Sbjct: 296 KNISDNIW 303


>gi|262368622|ref|ZP_06061951.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262316300|gb|EEY97338.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 343

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/280 (26%), Positives = 126/280 (45%), Gaps = 18/280 (6%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI------EDSQELIERI 57
             K +   Y++  L  +T    S SS     S H+A + I G I       +S + I+ +
Sbjct: 54  FFKCLTFAYLLFILFAMTKSC-STSSTDATASKHIAVVDIVGTIAADEQSVNSDDTIKSL 112

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLI 114
           ++   +  + A++++++SPGGS    + I++ IQ +    + K +   + +  AS  Y I
Sbjct: 113 KKAFENKQSQAVVLNINSPGGSPVQSDEIWQEIQYLKKTHSDKKLYAVIGDTGASGAYYI 172

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I+   +SLVGSIGV+     V   + KLGV  +++ S   KA  S    VNP  
Sbjct: 173 ASAADEILVNPSSLVGSIGVIMPNYGVNGLMQKLGVEDRTMTSGQNKALLSMTQPVNPAQ 232

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
              +Q V+D+ +  F+  V + R          L  G  WTG +A K+G+ D +G    +
Sbjct: 233 RAHVQGVLDNVHEHFINAVKQGRGKKLKSNDPALFSGLFWTGDQAVKLGIADRIGNLHTL 292

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273
            + L       +  K  D+    +     L  L  S    
Sbjct: 293 KREL-------NTDKAMDYTVVHSPLDAVLGRLGTSMGAG 325


>gi|206559379|ref|YP_002230140.1| family S49 serine peptidase [Burkholderia cenocepacia J2315]
 gi|206561219|ref|YP_002231984.1| family S49 serine peptidase [Burkholderia cenocepacia J2315]
 gi|198035417|emb|CAR51293.1| serine peptidase, family S49 [Burkholderia cenocepacia J2315]
 gi|198037261|emb|CAR53183.1| serine peptidase, family S49 [Burkholderia cenocepacia J2315]
          Length = 330

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 125/292 (42%), Gaps = 17/292 (5%)

Query: 7   KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           KI  R+    +  L+   ++ FS  S    +  H A + I G+I      ++ ++   ++
Sbjct: 44  KIFFRFAFLAVFVLLAFALIDFSSDSKFSSSGRHTALVTIDGEIAAGVNANADDINTALD 103

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115
               DD    +++ ++SPGGS      ++  I++++ +   KP+   V +M AS GY I+
Sbjct: 104 AAFDDDGTVGVVLRINSPGGSPVQAGMVYDEIRRLRKKYPDKPLYVVVTDMCASGGYYIA 163

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         + KLGV  +   S   K    PFS   PK  
Sbjct: 164 SAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFYDPFSPETPKMD 223

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q+++D  +  F++ V + R     +T  +  G  WTG ++ ++GL D  G  + V +
Sbjct: 224 AHAQELLDQVHAQFIKAVKDGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDTVAR 283

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
            +           + D+   ++      +    +        L        L
Sbjct: 284 DVLK------APDLVDYTVKESLTNRVARKFGAAVGGAAMKALTAGGASVSL 329


>gi|209528245|ref|ZP_03276710.1| signal peptide peptidase SppA, 67K type [Arthrospira maxima CS-328]
 gi|209491317|gb|EDZ91707.1| signal peptide peptidase SppA, 67K type [Arthrospira maxima CS-328]
          Length = 503

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/254 (25%), Positives = 126/254 (49%), Gaps = 9/254 (3%)

Query: 32  EDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYA 82
            ++   +A +   G+I D              E + R+  +D    +++ ++SPGGSA A
Sbjct: 216 PNSRNIIAVVYADGEIVDGRGGIGQVGGDRFSEELRRLRDNDRVKGIVLRVNSPGGSATA 275

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            E I R +Q  +  KP+I  +   AAS GY I+  S+ I+A  T++ GSIGV       +
Sbjct: 276 SEVIAREVQLTREEKPIIVSMGNAAASGGYWIAMGSDRILAEPTTVTGSIGVFGLLFNAQ 335

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
              ++ G++   VK+ P     S       + ++ +Q +VD  Y  FV  V++ R++P +
Sbjct: 336 DIANQNGITWDGVKTGPFADLNSISRPKTDQELEKVQQMVDLIYQRFVSSVAQLRDLPQE 395

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           + L +S GR+W+G +A+ +GL+D +GG ++   ++          K+ ++    ++    
Sbjct: 396 EVLEMSQGRVWSGVQAEALGLVDQLGGLQDAIAAVAEKAELGDDWKLAEYPRIPSFEERL 455

Query: 263 LKNLSISSLLEDTI 276
           L++L   +   D +
Sbjct: 456 LESLRTEATPADPL 469



 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 67/165 (40%), Gaps = 3/165 (1%)

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            + RA++  K     I           Y +   ++ I+      V   G   Q  ++   
Sbjct: 25  EVRRALEGFKESGKTIIAYDTDWTEREYYLGSVADEIIIHPMGTVEMSGFSSQTVFLAGA 84

Query: 145 LDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
           L++ G+ ++  +    K+   PF   E++P+  Q MQ ++   +  F   ++ SR++   
Sbjct: 85  LERFGIGVQVTRVGQYKSAVEPFLRQEMSPENRQQMQQLLGDLWGEFTGAIASSRSLTTA 144

Query: 203 KTLVLSDG-RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
           +   + +       A+AK   ++D +  ++EV   L  L  ++  
Sbjct: 145 QLQQIVNQDGFLMAADAKDREMVDQIAHRDEVAAQLRELTGEKEE 189


>gi|107022191|ref|YP_620518.1| peptidase S49 [Burkholderia cenocepacia AU 1054]
 gi|116689137|ref|YP_834760.1| peptidase S49 [Burkholderia cenocepacia HI2424]
 gi|170732425|ref|YP_001764372.1| peptidase S49 [Burkholderia cenocepacia MC0-3]
 gi|254245930|ref|ZP_04939251.1| Periplasmic serine protease (ClpP class) [Burkholderia cenocepacia
           PC184]
 gi|105892380|gb|ABF75545.1| peptidase S49 [Burkholderia cenocepacia AU 1054]
 gi|116647226|gb|ABK07867.1| peptidase S49 [Burkholderia cenocepacia HI2424]
 gi|124870706|gb|EAY62422.1| Periplasmic serine protease (ClpP class) [Burkholderia cenocepacia
           PC184]
 gi|169815667|gb|ACA90250.1| peptidase S49 [Burkholderia cenocepacia MC0-3]
          Length = 330

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 122/292 (41%), Gaps = 17/292 (5%)

Query: 7   KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           KI  R+    +  L+   ++ FS  S    +  H A + I G+I      ++ ++   ++
Sbjct: 44  KIFFRFAFLGVFVLLAFALIDFSSDSKFSSSGRHTALVTIDGEIAAGVNANADDINTALD 103

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLIS 115
               DD    +++ ++SPGGS      ++  I+++      KP+   V +M AS GY I+
Sbjct: 104 AAFDDDGTVGVVLRINSPGGSPVQAGMVYDEIRRLRGKYPDKPLYVVVTDMCASGGYYIA 163

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         + KLGV  +   S   K    PFS   PK  
Sbjct: 164 SAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFYDPFSPETPKMD 223

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q ++D  +  F++ V + R     +T  +  G  WTG ++ ++GL D  G  + V +
Sbjct: 224 AHAQALLDQVHAQFIKAVKDGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDTVAR 283

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
            +           + D+   ++      +    +        L        L
Sbjct: 284 DVLK------APDLVDYTVKESLTNRVARKFGAAVGGAAMKALTAGGASVSL 329


>gi|21226968|ref|NP_632890.1| periplasmic serine protease [Methanosarcina mazei Go1]
 gi|20905282|gb|AAM30562.1| Periplasmic serine protease [Methanosarcina mazei Go1]
          Length = 410

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 128/285 (44%), Gaps = 17/285 (5%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQI-----------EDSQ 51
             +     +++++ +++    +      N   S  +A I ++G +             S+
Sbjct: 107 SYLIVLLALIAVIAVSIAAIFYGLGFGGNIGSSDKIAVIYVQGTMLTGNVPAGLGYATSE 166

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASA 110
           E+ + I     D++  A+++ ++S GGS  A + I   I+K + +  PVI  + ++AASA
Sbjct: 167 EICQNIHSAVEDNNVRAIVLRVNSGGGSPSAAQEIAIEIEKAQKQGVPVIVSMGDLAASA 226

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
            Y IS  ++ I A  ++  GSIGV++ +  +  F    G++    KS   K     +  +
Sbjct: 227 AYYISAPADYIFANPSTNTGSIGVIWTFENMSGFYQNEGINYYVSKSGEFKDMGGTWRGL 286

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             +  +   +VV  SY  FV  V+E RNI   +   L+DGRI+TG+ AK +GL+D  G  
Sbjct: 287 TDEEKEYADEVVMESYEEFVTQVAEGRNISRSEVKKLADGRIYTGSRAKDLGLVDDFGNL 346

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
            +       LG  Q   K+   N  +      L      +  E  
Sbjct: 347 YDAIDKAAELGGVQGKPKVVYMN--RATLSSLLLGSETDNSSEGA 389


>gi|188579483|ref|YP_001922928.1| signal peptide peptidase SppA, 36K type [Methylobacterium populi
           BJ001]
 gi|179342981|gb|ACB78393.1| signal peptide peptidase SppA, 36K type [Methylobacterium populi
           BJ001]
          Length = 322

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 85/233 (36%), Positives = 136/233 (58%)

Query: 31  VEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
                  +ARI+I G I  S+   + IER+   ++   +++S+SSPGG+    E ++R +
Sbjct: 48  FPATENQIARISIGGFIAGSESTRKLIERVGESNAVKGVVISISSPGGTTTGSEELYRNL 107

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           + +  +KP++  V   AAS  Y+ + A++ IVA ET+LVGSIGVLFQYP V   LDK+GV
Sbjct: 108 RALAAKKPIVAFVDGTAASGAYITAIAADHIVARETALVGSIGVLFQYPDVSGLLDKVGV 167

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
            ++SVKSSP+KAEPS FS  +P+A   +  +V  +Y WF  LV+E R +   +   ++DG
Sbjct: 168 KVESVKSSPLKAEPSGFSPTSPEARAALSSIVLDTYGWFKGLVAERRGMDDSQLSAVADG 227

Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
           R+++G ++  + L+D +GG+ +    L       +   +KDW P         
Sbjct: 228 RVFSGRQSLPLKLVDELGGERQAVAWLEKERKVPANLPVKDWKPKAEGGLKLW 280


>gi|126656085|ref|ZP_01727469.1| Peptidase S49, SppA [Cyanothece sp. CCY0110]
 gi|126622365|gb|EAZ93071.1| Peptidase S49, SppA [Cyanothece sp. CCY0110]
          Length = 272

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/266 (27%), Positives = 137/266 (51%), Gaps = 8/266 (3%)

Query: 34  NSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
            S  +ARI I G I     + ++E ++ +       AL++ + SPGG+    + I+ A++
Sbjct: 9   PSKQIARIEITGAIASETRKYVLEALKTVKE-KKFPALLLRIDSPGGTVGDSQEIYEALK 67

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           +++ +  ++     ++AS G  I   +  I+A   ++ GSIGV+ +   ++  LDK+GVS
Sbjct: 68  RLQEKVKIVASFGNISASGGVYIGMGAQHIMANPGTITGSIGVILRGNNLERLLDKVGVS 127

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
            K +KS P K   +   E+  +   ++Q+++D+SY  FV  V+E RN+  D     +DGR
Sbjct: 128 FKVIKSGPYKDILAFDRELTEEEQHILQEMIDTSYQQFVTTVAEGRNLDVDNVKTFADGR 187

Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFCDLKNLSISS 270
           I+TG +A ++G++D +G +E+  +    L        +  D   PK+     L      S
Sbjct: 188 IFTGQQALELGVVDRLGTEEDARRWAAELAGLNPDKAQCYDIEEPKSLLNRVLSRNQTKS 247

Query: 271 LLEDTIPLMK---QTKVQGLWAVWNP 293
            L  +I  ++   +T  Q LW ++ P
Sbjct: 248 KLRTSIDWLEFELKTNGQPLW-LYRP 272


>gi|255322018|ref|ZP_05363168.1| signal peptide peptidase SppA, 36K type [Campylobacter showae
           RM3277]
 gi|255301122|gb|EET80389.1| signal peptide peptidase SppA, 36K type [Campylobacter showae
           RM3277]
          Length = 289

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/274 (23%), Positives = 122/274 (44%), Gaps = 2/274 (0%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63
           + + I T +  +  + +  + F        N P++ +I + G I D+ E +E+IE   +D
Sbjct: 14  IFRFINTYFKAMLFLLIVFLIFFSGKGESVNPPNLTQINLSGAIMDAGEALEKIEAARKD 73

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
            +   +++ + SPGG+      +  A++ ++  KPV+        S  Y     +N I+A
Sbjct: 74  GNIKGVLLYIDSPGGALAPSVELHLAVKNLRAAKPVVAYAGGSMTSGSYYAGAGANKILA 133

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
              + +GSIGV+ Q         K+GVS + VK+   K   +     +    + +Q++V+
Sbjct: 134 NPGAFIGSIGVIMQGADASELAAKIGVSQQVVKAGEYKEAGTFLRPWSKIEREQLQELVN 193

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
           +SY  FV  V+  RN+  +K+   ++ R++  ++A K+GLID V         L  L   
Sbjct: 194 ASYEMFVSDVAADRNLDANKSKEWANARVFLASDAAKLGLIDEVSDYYSARAELEKLSGV 253

Query: 244 QSIRKIKD--WNPPKNYWFCDLKNLSISSLLEDT 275
                 K   +      +     N  IS+  E  
Sbjct: 254 AEPVWAKPSVYEKAMQKFINQGANSLISAFFEAK 287


>gi|78065699|ref|YP_368468.1| peptidase S49 [Burkholderia sp. 383]
 gi|77966444|gb|ABB07824.1| Peptidase S49 [Burkholderia sp. 383]
          Length = 330

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 17/292 (5%)

Query: 7   KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           KI  R+    +  L    ++ FS  S    +  H A + I G+I      ++ ++   ++
Sbjct: 44  KIFFRFAFLAVFVLFAFALIDFSSDSKFSSSGRHTALVTIDGEIAAGVNANADDINTALD 103

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115
               DD    +++ ++SPGGS      ++  I++++ +   KP+   V +M AS GY I+
Sbjct: 104 AAFDDDGTAGVVLRINSPGGSPVQAGMVYDEIRRLRAKYPDKPLYVVVTDMCASGGYYIA 163

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         + KLGV  +   S   K    PFS   PK  
Sbjct: 164 SAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFYDPFSPETPKMD 223

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q ++D  +  F++ V + R     +T  +  G  WTG ++ ++GL D  G  + V +
Sbjct: 224 AHAQALLDQVHAQFIKAVKDGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDTVAR 283

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
            +           + D+   ++      +    +        L        L
Sbjct: 284 DVLK------APDLVDYTVKESLTNRVARKFGAAVGGAAMKALTAGGASVSL 329


>gi|237713852|ref|ZP_04544333.1| protease IV [Bacteroides sp. D1]
 gi|262409239|ref|ZP_06085783.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 2_1_22]
 gi|294647614|ref|ZP_06725184.1| signal peptide peptidase SppA, 67K type [Bacteroides ovatus SD CC
           2a]
 gi|294810039|ref|ZP_06768712.1| signal peptide peptidase SppA, 67K type [Bacteroides xylanisolvens
           SD CC 1b]
 gi|298482326|ref|ZP_07000513.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. D22]
 gi|229446008|gb|EEO51799.1| protease IV [Bacteroides sp. D1]
 gi|262352986|gb|EEZ02082.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 2_1_22]
 gi|292637046|gb|EFF55494.1| signal peptide peptidase SppA, 67K type [Bacteroides ovatus SD CC
           2a]
 gi|294442755|gb|EFG11549.1| signal peptide peptidase SppA, 67K type [Bacteroides xylanisolvens
           SD CC 1b]
 gi|295085355|emb|CBK66878.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49
           [Bacteroides xylanisolvens XB1A]
 gi|298271613|gb|EFI13187.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. D22]
          Length = 592

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/270 (26%), Positives = 131/270 (48%), Gaps = 13/270 (4%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
             + +   VA     G+I D              ++I  + ++  D+   A+++ ++SPG
Sbjct: 301 PKDKSGNIVAVYYASGEITDYPSSATSEDGIVGSKVIRDLRKLKDDNDVKAVVLRVNSPG 360

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           GSA+A E I+ A++++K +KPVI  + + AAS GY ISC ++ IVA  T+L GSIG+   
Sbjct: 361 GSAFASEQIWHAVKELKTKKPVIVSMGDYAASGGYYISCVADTIVAEPTTLTGSIGIFGI 420

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
            P VK   DK+G+S   VK++      +     N     ++Q ++   Y  FV   +E R
Sbjct: 421 IPNVKGLTDKIGLSYDVVKTNKYADFGNIMRPFNEDERSLLQMMITEGYDTFVSRCAEGR 480

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           ++  +    +++GR+WTG  AKK+GL+D +GG ++      A    +    +  +   ++
Sbjct: 481 HMTKEAIEKIAEGRVWTGETAKKLGLVDELGGIDKALDIAVAKAGIEG-YTVVSYPAKQD 539

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           ++   L     + +    +        Q  
Sbjct: 540 FFSSLLDTKPTNYVESQLLKSKLGEFYQQF 569



 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 98/264 (37%), Gaps = 26/264 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49
             ++S+VTL  +  +  +        V  + + G +                        
Sbjct: 22  LFIISMVTLFGIMSASDTETIVKKNSVMMLDLNGTLVERTQEDPLGILSQLFGDESNTYG 81

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
             +++  I++   +++   + +  SS G S  + + I  A+   K     +    +    
Sbjct: 82  LDDILSSIQKAKENENIKGIYLQASSLGTSYASLQEIRNALLDFKESGKFVIAYADSYTQ 141

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y +S A++ ++     ++   G+     + K  L K+GV ++  K    K+   PF  
Sbjct: 142 GLYYLSSAADKVLLNPKGMIEWRGIASAPLFYKDLLQKIGVEMQVFKVGTYKSAVEPFIA 201

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225
           +E++P   + +   + S +      VS SRNIP D   V +D     +   E+ + G  D
Sbjct: 202 TEMSPANREQVTAFITSIWGQVTEGVSASRNIPVDSLNVYADRMLMFYPSEESVRCGFAD 261

Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249
            +  + +V   L  L        +
Sbjct: 262 TLIYRNDVRNYLKKLVEIDEDDNL 285


>gi|317477481|ref|ZP_07936707.1| signal peptide peptidase SppA [Bacteroides eggerthii 1_2_48FAA]
 gi|316906345|gb|EFV28073.1| signal peptide peptidase SppA [Bacteroides eggerthii 1_2_48FAA]
          Length = 588

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 129/245 (52%), Gaps = 12/245 (4%)

Query: 30  HVEDNSPHVARIAIRGQI-----------EDSQELIERIERISRDDSATALIVSLSSPGG 78
             + +   +A     G+I            +S+++I  + ++  D++  A+++ ++SPGG
Sbjct: 298 PKDKSGNVIAVYYAYGEIDGGSSASTEEGINSEKVIRDLRKLKDDENVKAVVLRVNSPGG 357

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           SAY  E I+ A++++K  KPVI  + + AAS GY I+C ++ IVA  T+L GSIG+    
Sbjct: 358 SAYGSEQIWYAVEQLKKEKPVIVSMGDYAASGGYYIACNADTIVAEPTTLTGSIGIFGMM 417

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P  K   +KLG++   VK++P     +    +N     +MQ  V++ Y  F+   S+ R 
Sbjct: 418 PNAKGLTEKLGLNFDIVKTNPYADFGNLTRPMNDGEKGLMQMYVNNGYKLFLTRCSDGRG 477

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           I  ++   ++ GR+WTG+ AK++GL+D +GG ++  +   A         + ++   + +
Sbjct: 478 ISMEELDKIAQGRVWTGSTAKELGLVDELGGLDKALEIAVAKAGV-DTYTVMNYPKKEGF 536

Query: 259 WFCDL 263
               +
Sbjct: 537 LESLM 541



 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 104/281 (37%), Gaps = 33/281 (11%)

Query: 1   MEFVLKK-------IKTRYVMLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQIE-- 48
           M+  LK        I    V+L  +++ VV+   SS   +       V  + + G +   
Sbjct: 1   MKDFLKFTLATVTGIIVSSVVLFFISILVVFSMVSSSESETQVRKNSVMMLDLNGTLAER 60

Query: 49  -----------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
                               +++  I +   +++   + +  +S      + E I  A++
Sbjct: 61  SQENPLDILMKDDYKTYGLDDVLSSIRKAKENENIKGIYIQANSLSAGYASLEEIRHALK 120

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
             K     I    +    + Y +S  ++ ++     ++   G+     + K  L+K+GV 
Sbjct: 121 DFKESGKFIVAYGDSYTQSLYYLSSIADKVMLNPQGMLEWRGLAATPMFFKDLLEKIGVE 180

Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           ++  K    K+   PF  +E++P   + +   + S +      ++ESRN+  +     +D
Sbjct: 181 MQVFKVGTYKSAVEPFIATEMSPANREQVNVYLSSVWGQITGDIAESRNLSVEALNKEAD 240

Query: 210 G--RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                +   E+ K GL+D +  + +V   L  L        
Sbjct: 241 RMLMFYPAEESVKNGLVDTLIYKNDVRDYLKTLVGIDKDDD 281


>gi|254523187|ref|ZP_05135242.1| signal peptide peptidase SppA, 67K type [Stenotrophomonas sp.
           SKA14]
 gi|219720778|gb|EED39303.1| signal peptide peptidase SppA, 67K type [Stenotrophomonas sp.
           SKA14]
          Length = 663

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/268 (22%), Positives = 118/268 (44%), Gaps = 12/268 (4%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVS 72
           +       +  D+ P VA +   G+I            +     +     D++  A+++ 
Sbjct: 350 LALLDARRNPVDSRPQVAVVVAEGEISGGDLPAGRIGGESTSALLRAARDDENVKAVVLR 409

Query: 73  LSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
           + SPGG  +A E I R +  ++   KPV+  + ++AAS GY IS  ++ I A  +++ GS
Sbjct: 410 VDSPGGEVFASEQIRREVVALQAAGKPVVVSMGDLAASGGYWISMNADRIYADPSTITGS 469

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IG+    P     LDK+GV    V ++           ++P   Q++Q V++  Y  F  
Sbjct: 470 IGIFGMVPNFSRALDKIGVHTDGVGTTRFAGAFDVTRPMDPAVGQVIQTVINKGYADFTG 529

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG--VDQSIRKI 249
            V+++R  P +    ++ GR+W+GA+AK+ GL+D  GG ++      +          ++
Sbjct: 530 RVADARKKPVEAVDEVARGRVWSGAQAKERGLVDAFGGLKDAVADAASRAKLGKADAYRV 589

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIP 277
           +        +   +   + S      + 
Sbjct: 590 RYIEKAATPFAQFVSGFAGSRAGAWMLS 617



 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 76/210 (36%), Gaps = 12/210 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAAS 109
           ++L+  IE    D     +++ L     S +A    +  A+Q ++     +    E    
Sbjct: 129 RDLLRVIESAKEDKKIERVVLELDKLQPSGFASLREVASALQDLRASGKQLVAYSESMGQ 188

Query: 110 AGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167
           + YL++  ++ +       V   G+  ++  +     DKLGV +   K    K+   P+ 
Sbjct: 189 SQYLLAAQADEVYLDPMGSVVLEGLGRYRQYFRTGLQDKLGVDVHLFKVGEYKSAAEPYV 248

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV--------LSDGRIWTGAEA 218
               +P + +     ++  +  ++  ++++R +   +           ++         A
Sbjct: 249 LDAASPASKEADLFWMNDVWQRYLADIAKARRLDPAQLAAGIDTLPEGIAAAGGDLAKFA 308

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            +  L+  +  +EE    +   GV      
Sbjct: 309 LQQKLVTALKTREEFEDLMIERGVADDDAD 338


>gi|317154743|ref|YP_004122791.1| signal peptide peptidase SppA, 36K type [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944994|gb|ADU64045.1| signal peptide peptidase SppA, 36K type [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 300

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/267 (24%), Positives = 131/267 (49%), Gaps = 3/267 (1%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWS---SHVEDNSPHVARIAIRGQIEDSQELIERIER 59
           FV   +     ++ ++  T  + S       V      +  +++ G I DS E++E I  
Sbjct: 16  FVFGVMMILVAVVLVMGATAFFRSMGWTPHSVGMGGDRLGMVSVEGVILDSAEVVEWIRT 75

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119
           +  D S   +++ ++SPGG+    + I++A+  +   KPV+     +AAS GY  S  ++
Sbjct: 76  LKDDTSIKGVLLRVNSPGGAIAPSQEIYQAVSALAEVKPVVASYGTVAASGGYYASAPAH 135

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179
           +IVA   S+  SIGV+ ++  V   L+KLG+  + + +   KA  +P  E+ P+  + + 
Sbjct: 136 VIVANPGSITASIGVMAEFVTVTEALEKLGIKPEVLTTGKYKAAGTPMRELTPEQREQLL 195

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
           D++   +  FV  V+ +R +P+ +   ++DGR  TG +A ++GL+D++G + + +  L A
Sbjct: 196 DLMRDLHDQFVGDVARARKMPFARVAAVADGRGVTGRQALELGLVDMLGSESQAFDKLKA 255

Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           +   +    +      +          
Sbjct: 256 MCSIEGRAVLVKGPVKEQSLLEKFVGS 282


>gi|223995779|ref|XP_002287563.1| hypothetical protein THAPSDRAFT_261589 [Thalassiosira pseudonana
           CCMP1335]
 gi|220976679|gb|EED95006.1| hypothetical protein THAPSDRAFT_261589 [Thalassiosira pseudonana
           CCMP1335]
          Length = 457

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 106/242 (43%), Gaps = 3/242 (1%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSP 76
           +L +       +       VA + + G I  S   E+I  + +I +D     L++ ++SP
Sbjct: 216 SLVLSGLGIYPNDVSQGDKVAVVTVDGGIGRSLAYEIISSLRKIRKDKDVKCLVLRVNSP 275

Query: 77  GGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           GGS  + EAI   ++ ++    PV+  +   AAS GY IS  +  I A  T+L GSIGV 
Sbjct: 276 GGSVVSSEAILEEVKALEIVSLPVVCSMANYAASGGYYISTNAERIFAQPTTLTGSIGVY 335

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                   +    G+           A   P + +       +       Y +F  +V++
Sbjct: 336 GIKFDASQWAKSYGIRSDYYPHGSHGATVHPLTPLTQSMKLNLDRTTLGYYDYFKSIVAK 395

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
            R++   +   ++ GR+WTG +AK+VGL+D +GG E     + +        +++ W   
Sbjct: 396 GRSLSPQQVESIAQGRVWTGEQAKEVGLVDAIGGLERAISYVKSAHTTTEKVQVEYWPKK 455

Query: 256 KN 257
            +
Sbjct: 456 SS 457



 Score = 67.3 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 84/212 (39%), Gaps = 9/212 (4%)

Query: 48  EDSQELIERIERISRDDSATALIVSLS----SPGGSAYAGEAIFRAIQKVKNRKPVITEV 103
            +++EL++ I++ + D + +AL          P G A+  E I  A++            
Sbjct: 1   MEAKELVDIIQKAADDKNISALYADFGEGMRYPVGYAHI-EDIRNAVRIFNESHRPSYAF 59

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
                 + Y ++ A + +       +   G      +++  LDK GV     K    K  
Sbjct: 60  GYSFHWSEYFLASAFSHVHLQSRGSLDLFGATVNNLFLRSALDKYGVKAHVFKHGDYKTA 119

Query: 164 PSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--LVLSDGRIWTGAEAK 219
           P+ F+E   +   ++ ++ +  S  +     +  SR + +D      +SD    T   A+
Sbjct: 120 PNVFTEKVYSKPHLETVKSMTASLNNTIRTCIRNSRALNFDDVMWQSISDYGSLTAVNAE 179

Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
           ++GL+D     + +   L A   D +  K++ 
Sbjct: 180 EIGLVDSTPSVDPLPSLLEANKSDDAKAKLEQ 211


>gi|282599624|ref|ZP_05971253.2| signal peptide peptidase SppA [Providencia rustigianii DSM 4541]
 gi|282567989|gb|EFB73524.1| signal peptide peptidase SppA [Providencia rustigianii DSM 4541]
          Length = 635

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 76/276 (27%), Positives = 137/276 (49%), Gaps = 14/276 (5%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLS 74
           Y S  +   + + ++A I ++G I D          + +  +I     +D   A+++ ++
Sbjct: 334 YSSKIAETSNAAGNIAVIVVQGAIMDGPQTPGIAGGETIAAQIRDARLNDDIKAIVLRVN 393

Query: 75  SPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           SPGGS  A + I   +   K   KPV+  +  MAAS GY IS  ++ I+A+ ++L GSIG
Sbjct: 394 SPGGSVSASDLIRNELAAAKASGKPVVVSMGGMAASGGYWISTPADYIIASPSTLTGSIG 453

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           +       +  L+ +GV    V +SP+    S    ++P+   MMQ  +++ Y  F+ LV
Sbjct: 454 IFGVINTFENSLESIGVYTDGVSTSPLAD-ISLTKGISPEFADMMQITIENGYETFIGLV 512

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           ++SRN    +   ++ GR+WTG +A  +GL+D +G  ++       L    SI    DW 
Sbjct: 513 AKSRNKTPAEIDKIAQGRVWTGQDALNIGLVDKLGDFDDAVNKAAELAKVDSIE--LDWM 570

Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
            P+  +   L  L +S+ ++  +P + Q+ +    A
Sbjct: 571 QPELSFMDQLI-LELSNNVQVMMPDVLQSFLPPAVA 605



 Score = 72.7 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 101/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH--VARIAIRGQIEDSQ------- 51
           + F+ + I      + +  +   Y    S  +    +     + ++G + D         
Sbjct: 37  INFIRELIFNVIFFVLVFVVIGSYSLLQSEDKPEKNYFGALVVDLQGVVVDQVSSPDPFG 96

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               ++++ I   + DD  T +++ L +  G+       I +AI
Sbjct: 97  RMSRELLGTSNNLMQENSLFDIVDTIRTAADDDRITGMVLRLDNLAGADQPSIAYIGKAI 156

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ K     +  V +  + + Y ++  ++ +  A    VG  G      Y K  L+KL V
Sbjct: 157 EQFKASGKPVYAVGDSYSQSQYYLASFADDVFIAPHGNVGVYGFSTNTLYYKSLLEKLKV 216

Query: 151 SIKSVKSSPMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK----- 203
           S    +    K+   P     ++P+A +     +++ +  +++ ++++R     +     
Sbjct: 217 SSHVFRVGTYKSAVEPMMRDNMSPEAREANLLWLNTLWDNYLKALADNRQTKPVQIFPGA 276

Query: 204 ---TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L   +  +   A +  L+D +  +E+    L          K
Sbjct: 277 EQLITQLRAVKGDSAQYALQQKLVDKIYTREQSEDILSKHFGWNKEDK 324


>gi|313681597|ref|YP_004059335.1| signal peptide peptidase sppa, 36k type [Sulfuricurvum kujiense DSM
           16994]
 gi|313154457|gb|ADR33135.1| signal peptide peptidase SppA, 36K type [Sulfuricurvum kujiense DSM
           16994]
          Length = 290

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/267 (23%), Positives = 124/267 (46%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64
           LK I+  +    LV + +     SS       ++ +IA+ G I D+  ++ +I+    +D
Sbjct: 16  LKFIQEHFKATVLVLIVLWLIIPSSENGITPHNLQKIALSGPILDATPIVAQIDEAREND 75

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
               ++ S+ SPGG+      I  AI+++   KP +     + AS GY      N I+A 
Sbjct: 76  GIKGVLFSIDSPGGAVAPSVEIAYAIKRLSETKPTVVYAAGIMASGGYYSGIWGNEIIAN 135

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             S++GSIGV+ +   +   ++K+GV  + V +   K   +   E +      +  V+D 
Sbjct: 136 PGSMIGSIGVIMEGADISGLMEKVGVKTQVVHAGTYKQVGTFDREWSAAERAELNKVIDG 195

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           +Y  FV  V+ +R +   ++   +D  I+T  +AKK GL+D +G + +  + +  L   +
Sbjct: 196 TYSMFVVDVARARKLDPLRSGEYADAHIFTALQAKKAGLVDSIGVEYDAKKRVEELSKVK 255

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSL 271
                K+    + +     +  +++ L
Sbjct: 256 DPTWNKEDPMDRFFKRFAAEGATLAHL 282


>gi|257058310|ref|YP_003136198.1| signal peptide peptidase SppA, 36K type [Cyanothece sp. PCC 8802]
 gi|256588476|gb|ACU99362.1| signal peptide peptidase SppA, 36K type [Cyanothece sp. PCC 8802]
          Length = 272

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 133/268 (49%), Gaps = 6/268 (2%)

Query: 31  VEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
                  +ARI I G I     Q +++ + +  +D    AL++ + SPGG+    + I+ 
Sbjct: 6   KPSTRKQIARIEITGAIASETRQTVLKAL-KTVKDKKFPALLLRIDSPGGTVADSQEIYE 64

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
           A+++++    ++     ++AS G  I   +  IVA   ++ GSIGV+ +   ++  LDK+
Sbjct: 65  ALKELRKSVKIVASFGNISASGGVYIGVGAEYIVANPGTITGSIGVILRGNNLERLLDKV 124

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           G+S K +KS P K   S   E+  +   ++Q+++D SY  FV  V++ RN+  +K    +
Sbjct: 125 GISFKVIKSGPYKDILSFDRELTEEEQTILQEMIDVSYQQFVTTVAQGRNLSVEKVKSFA 184

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLS 267
           DGRI+TG +A ++G++D +G +E+  +    L   +    +      PK  W   L    
Sbjct: 185 DGRIFTGQQALELGVVDRLGTEEDARRWAAELAGLKPDQAQCYTIEEPKPLWNRLLSRNQ 244

Query: 268 ISSLLEDTIPLMK-QTKVQG-LWAVWNP 293
            S  L   I  +K +    G L  ++ P
Sbjct: 245 SSKGLGTAIDWVKFELATNGQLLWLYRP 272


>gi|148359293|ref|YP_001250500.1| signal peptide peptidase [Legionella pneumophila str. Corby]
 gi|296107340|ref|YP_003619040.1| signal peptide peptidase [Legionella pneumophila 2300/99 Alcoy]
 gi|148281066|gb|ABQ55154.1| signal peptide peptidase [Legionella pneumophila str. Corby]
 gi|295649241|gb|ADG25088.1| signal peptide peptidase [Legionella pneumophila 2300/99 Alcoy]
 gi|307610447|emb|CBX00018.1| hypothetical protein LPW_17741 [Legionella pneumophila 130b]
          Length = 318

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 129/291 (44%), Gaps = 23/291 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWS-------SHVEDNSPHVARIAIRGQIEDS-----QEL 53
           +K + ++++ +++ + +VY S+        +    +  H+  I I G+I DS        
Sbjct: 30  RKRRWKWIIRAIILVVLVYSSYKIVSVAKTTEASKDKEHIGLIDINGEIADSSSASADNF 89

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASA 110
            + IE+  +     ALIV ++SPGGS    E I+  +   + +K          +M ASA
Sbjct: 90  TKGIEKAYKSKGLKALIVRINSPGGSPVQAEYIYNVLQYYKSLKPNIKTYAVCVDMCASA 149

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
            Y ++  ++ I A+  S+VGSIGVL+        L KLG+S +   S   KA   PFS  
Sbjct: 150 AYYVAVGADEIYASPASMVGSIGVLYNGFGFVDALQKLGISRRLQTSGVNKAFLDPFSPT 209

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                + +Q ++D  +  F+  V E R            G  WTG +A   GLID     
Sbjct: 210 TEFQKEKLQTMLDIVHKQFITRVKEGRGNRLHVDDETFSGLFWTGEQALANGLIDGYASS 269

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
            ++ + +        I  I D+   +N +    KNL  +  + D +P++  
Sbjct: 270 GQLAREVIK------ITDIVDYTYKQNVFDRLTKNLGTA--MADELPVILG 312


>gi|147918877|ref|YP_687397.1| putative protease IV [uncultured methanogenic archaeon RC-I]
 gi|110622793|emb|CAJ38071.1| putative protease IV [uncultured methanogenic archaeon RC-I]
          Length = 299

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 75/274 (27%), Positives = 132/274 (48%), Gaps = 19/274 (6%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN------SPHVARIAIRG-QIED------ 49
           F+L  +    V+++ V L +V+ S                 VA + I G  I D      
Sbjct: 23  FILGILAIVTVLIAGVGLYLVFGSGIKGDLKEMLGLDHDNKVAVVYIEGKMIADKSNDPT 82

Query: 50  ------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103
                 S E++  I + + DDS  A+++ ++SPGG+  A E I   I + K +KPVI  +
Sbjct: 83  DDGAAFSSEVVRAIRKATADDSIKAIVLRVNSPGGTPVAAEEIIAQINRTKAKKPVIVSM 142

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
            + A SA Y +S +++ I A   +  GSIGV++ +     + ++ G++    KS   K  
Sbjct: 143 GDSATSAAYYVSASADKIFANPDTFTGSIGVIWVFKNKTRYYNEEGINFYIAKSGNYKDV 202

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
            + +  ++      +Q +++ SY  FV  V+  RN+P ++   ++DGR+ TG  AK +GL
Sbjct: 203 GADWRGLSENEKSYIQSIINESYERFVTAVATGRNLPENQIRAIADGRVMTGTSAKSMGL 262

Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           +D +GG  +  +    LG  +    I   N P +
Sbjct: 263 VDEIGGLYDAIEYAAKLGGIKGEPVIVHMNEPGS 296


>gi|313206075|ref|YP_004045252.1| signal peptide peptidase sppa, 67k type [Riemerella anatipestifer
           DSM 15868]
 gi|312445391|gb|ADQ81746.1| signal peptide peptidase SppA, 67K type [Riemerella anatipestifer
           DSM 15868]
 gi|315023746|gb|EFT36749.1| putative protease IV [Riemerella anatipestifer RA-YM]
          Length = 584

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/256 (26%), Positives = 121/256 (47%), Gaps = 9/256 (3%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDSQE--------LIERIERISRDDSATALIVSLSS 75
           Y         +S  +A +   G I +  E         IE I  +  DD   A+++ ++S
Sbjct: 290 YIKSIKDESKSSEKIAVLYASGNIINGDEATNISDEKYIEYIRDLKDDDDIKAVVLRINS 349

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           PGGSA A + I   +Q++K +KP+I    + AAS GY I+ A + I +   ++ GSIGV 
Sbjct: 350 PGGSANASDQILFELQQLKLKKPLIVSFGDYAASGGYYIAMAGDKIYSEPNTITGSIGVF 409

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
              P  K   +K G+    V ++      SP S +      M+Q+ V+ +Y  FV  V++
Sbjct: 410 GMIPDFKNLANKNGIRSDVVSTNTNSQMMSPISGITEGTKNMLQNSVEQTYKRFVYFVTK 469

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
           +RN  +++   ++ GR+W+G +AK++GL+D +G   +           ++   I  +   
Sbjct: 470 NRNKTFEQVDEIAGGRVWSGKKAKELGLVDELGSLNDAITFAIKKAKVKN-YNIVSYPSE 528

Query: 256 KNYWFCDLKNLSISSL 271
            N      K +   S+
Sbjct: 529 INPLEEFFKGMDEESI 544



 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 81/208 (38%), Gaps = 3/208 (1%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
           + I  IE+   DD+   + +   +        E+I  AI+  K     +       +   
Sbjct: 82  DFIRAIEKAKTDDNIKGISIENDNINAGITQIESIRNAIEDFKKSGKFVYSYGNSVSQPS 141

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SE 169
           Y +   ++         +   G+  +  ++K F ++ G+ I  ++    KA   PF  ++
Sbjct: 142 YFLGSVADKFYLNPAGGIELKGMASEVIFLKDFAEQYGIGINIIRHGKYKAAVEPFLRND 201

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGAEAKKVGLIDVVG 228
           ++P+  + +  ++   ++     ++ SR I  +    ++DG        + K GL+D + 
Sbjct: 202 ISPENKEQLSTLLSDLWNRVSNKIASSRKISIENFQSITDGLYGMIPDFSLKYGLVDKLM 261

Query: 229 GQEEVWQSLYALGVDQSIRKIKDWNPPK 256
            + E    L       + +K+   +  K
Sbjct: 262 QKGEYELLLKQKIGIDTDKKLNKVSIRK 289


>gi|167764531|ref|ZP_02436652.1| hypothetical protein BACSTE_02920 [Bacteroides stercoris ATCC
           43183]
 gi|167697200|gb|EDS13779.1| hypothetical protein BACSTE_02920 [Bacteroides stercoris ATCC
           43183]
          Length = 540

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 128/245 (52%), Gaps = 12/245 (4%)

Query: 30  HVEDNSPHVARIAIRGQI-----------EDSQELIERIERISRDDSATALIVSLSSPGG 78
             + +   +A     G+I            +S+++I+ + ++  +++  A+++ ++SPGG
Sbjct: 250 PRDKSGNVIAVYYAYGEIDGGSSASTDEGINSEKVIKDLRKLKDNENVKAVVLRVNSPGG 309

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           SAY  E I+ A+ ++K  KPVI  + + AAS GY ISC ++ IVA  T+L GSIG+    
Sbjct: 310 SAYGSEQIWYAVNQLKKEKPVIVSMGDYAASGGYYISCNADTIVAEPTTLTGSIGIFGMM 369

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P  K   +KLGV+   VK++P     +    +N     +MQ  V++ Y  F+   S+ R 
Sbjct: 370 PNAKGLTEKLGVNFDVVKTNPYADFGNLTRPMNDGEKGLMQMYVNNGYELFLTRCSDGRG 429

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           I  ++   ++ GR+WTG+ AK++GL+D +GG ++  +   A         +  +   + +
Sbjct: 430 ISMEELDKIAQGRVWTGSTAKELGLVDELGGLDKALEIAIAKAGV-DAYTVMSYPKKEGF 488

Query: 259 WFCDL 263
               +
Sbjct: 489 LESLM 493



 Score = 98.9 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 81/203 (39%), Gaps = 4/203 (1%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
              +++  I++   ++    + +  +S G    + E I  A++  K     +    +   
Sbjct: 30  GLDDILSSIKKAKENEDIKGIYIQATSLGAGFASLEEIRNALKDFKESGKFVVAYGDAYT 89

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167
              Y +S  ++ ++     ++   G+     + K  L+K+GV ++  K    K+   PF 
Sbjct: 90  QGLYYLSSVADKVLLNPQGMLEWRGLAATPMFFKDLLEKVGVEMQVFKVGTYKSAVEPFI 149

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLI 224
            +E++    + +   + S +      V+ESRN+  +     +D     +   E+ K GL+
Sbjct: 150 STEMSAANREQINVYLSSIWGQITSAVAESRNLSVEALNKEADRMLMFYPAEESVKNGLV 209

Query: 225 DVVGGQEEVWQSLYALGVDQSIR 247
           D +  + +V   L  L       
Sbjct: 210 DTLIYKNDVRDYLKNLAGIDKDD 232


>gi|157964584|ref|YP_001499408.1| Signal peptide peptidase SppA, 36K type [Rickettsia massiliae MTU5]
 gi|157844360|gb|ABV84861.1| Signal peptide peptidase SppA, 36K type [Rickettsia massiliae MTU5]
          Length = 305

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 153/298 (51%), Gaps = 15/298 (5%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSW-----------SSHVEDNSPHVARIAIRGQIEDSQEL 53
            ++IK+R ++  L  + ++   +              +  N  ++A + I   I + ++ 
Sbjct: 12  RRQIKSRLLIWKLAAIILIAIVFLLVGKDFAPKEVLPINSNEDYIASVLIDEIILEDEKR 71

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
            +++++I  D    ALIV+++SPGG+    E I+  ++K+  +KPV+  +  MAAS GYL
Sbjct: 72  DKKLKKIIDDSHIKALIVNVNSPGGTVVGSEKIYNILRKISAKKPVVIVMGTMAASGGYL 131

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           IS   + I++   ++ GSIGV+ Q   V     KLG+   + KS  +KA P+P  ++   
Sbjct: 132 ISLGGDYIISHNGTITGSIGVILQTAEVTELAQKLGIKFNNFKSGELKAVPNPTEKLTEA 191

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
               + + ++ +Y++F+ LVSE RN+P ++   L+DGR+++G +A K+ L+D +G ++  
Sbjct: 192 VRVTIMENIEDTYNFFLELVSERRNLPIEEVKKLADGRVYSGRQALKLKLVDAIGSEDTA 251

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
            + L  +        +KD+         D+      S++    P   +    G+ A++
Sbjct: 252 LKWLQEVQKINVNLLVKDYQLKPKPKLMDIILEDFDSIV----PSFFKNSFNGIKAIF 305


>gi|88798805|ref|ZP_01114388.1| signal peptide peptidase SppA, 36K type [Reinekea sp. MED297]
 gi|88778568|gb|EAR09760.1| signal peptide peptidase SppA, 36K type [Reinekea sp. MED297]
          Length = 327

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 68/275 (24%), Positives = 114/275 (41%), Gaps = 15/275 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           +  KI T   +  L+   +   S +  +     H A I + G I       +  ++  + 
Sbjct: 44  IFFKILTFTYLFVLLGYVMFNTSATQDIGPTGGHTAVIDVSGVIAQGNLAGADSVVASLR 103

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLIS 115
           R        A+I+ ++SPGGS      I+  I +++ +   I     +    AS  Y I+
Sbjct: 104 RAVEHSDTRAVILRINSPGGSPVQSAYIYNEINRLRQKYEDIPIYSVIVDSGASGAYYIA 163

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A+  I A   SLVGSIGV       +  ++K+G+  +   S   KA   PF EV+P+  
Sbjct: 164 SATQEIYANGASLVGSIGVTAAGFGFQDLIEKVGIERRQFTSGEHKAFLDPFMEVDPEEQ 223

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
            + + V++  +  F+R V   R         L  G  WTG++A  +GL+D +    E   
Sbjct: 224 ALFEAVLNDVHEQFIRDVQAGRGDRLADNDDLFSGLFWTGSQALDLGLVDGLKSTSE--- 280

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270
               L  D    K  D+    +      +NL +S 
Sbjct: 281 ----LARDIGYPKTVDFTYHPSPLEQFARNLGVSM 311


>gi|45358632|ref|NP_988189.1| basic helix-loop-helix dimerization domain-containing protein
           [Methanococcus maripaludis S2]
 gi|45047498|emb|CAF30625.1| Basic helix-loop-helix dimerization domain bHLH:Peptidase U7:Signal
           peptide peptidase, SppA 36 kDa type [Methanococcus
           maripaludis S2]
          Length = 308

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/279 (26%), Positives = 148/279 (53%), Gaps = 21/279 (7%)

Query: 5   LKKI----KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE------------ 48
           +KKI       +++++++ + ++ F  S  +  +S ++A I I G I             
Sbjct: 1   MKKIYYYSIAVFLIIAILMVGLLVFVSSDGI--SSKNIALINIDGTITLESSDSGLFSSI 58

Query: 49  --DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
                + +E ++    +D+  A+I+ ++SPGG A A E + R I++V  +KPV+  +  M
Sbjct: 59  QPGVNDYVEWLDDAENNDNIKAVIIKINSPGGGAVASEKLSRKIKEVSEKKPVVAYIENM 118

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            ASA Y  + ++N IVA   ++VGSIGV  +  +    ++KLG++  S+     K   +P
Sbjct: 119 GASAAYQAASSTNYIVAERQAVVGSIGVRMELIHYYGLMEKLGINTTSITGGKYKDIGTP 178

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
              +  +   M++ +V+ SY+ FV  V+E+RN+  ++TL ++DG+I++G +A++VGL+D+
Sbjct: 179 TRSMTEEEYAMLESMVNESYYEFVSWVAENRNMTINETLEVADGKIYSGTQAQRVGLVDI 238

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            G +++       LG   +   I ++    +     +  
Sbjct: 239 TGTEDDAVDMAVKLGNITN-PDIYEYGKTSSANLFGMTF 276


>gi|332525765|ref|ZP_08401912.1| peptidase S49 [Rubrivivax benzoatilyticus JA2]
 gi|332109322|gb|EGJ10245.1| peptidase S49 [Rubrivivax benzoatilyticus JA2]
          Length = 331

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 71/286 (24%), Positives = 125/286 (43%), Gaps = 16/286 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQIEDSQE-----LIERIER 59
           ++  R++ L+L             +    + PH A + +RG+I    E     L+  +  
Sbjct: 50  RLFFRFIWLALAVALAWGLMSERFTPTAPSRPHTALVEVRGEIAPGSEASAELLVSALRS 109

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCA 117
              D  A A+++ ++SPGGS      +   I+++K  ++K V   V EM AS  Y I+ A
Sbjct: 110 AFEDQGAQAVVLRINSPGGSPVQAGIVNDEIRRLKVLHQKKVYAVVEEMCASGAYYIAVA 169

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           ++ I   + SLVGSIGVL         +DKLG+  + + +   K    P+S  N +    
Sbjct: 170 ADEIYVDKASLVGSIGVLMDGFGFTGLMDKLGIERRLLTAGENKGMLDPYSPQNEQQTAY 229

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
            + ++D  +  F+ +V + R     +T     G  W G EA ++GL D +G  + V + +
Sbjct: 230 AKAMIDQIHQQFIAVVRQGRGKRLQETPETFSGLFWNGEEAVRLGLADKMGNLDYVAREV 289

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
                      + D+ P +N      K    +   E  +  M+Q  
Sbjct: 290 VK------AEDVVDYTPRENVAERLAKRFGAAMG-EGAVKAMRQVS 328


>gi|158425341|ref|YP_001526633.1| peptidase S49 protein [Azorhizobium caulinodans ORS 571]
 gi|158332230|dbj|BAF89715.1| peptidase S49 protein [Azorhizobium caulinodans ORS 571]
          Length = 323

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 86/273 (31%), Positives = 146/273 (53%), Gaps = 14/273 (5%)

Query: 33  DNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
            +SPHVAR+ I G I + ++ ++ +E I R  +A A+IVS+ SPGG+    E ++ A+++
Sbjct: 47  ASSPHVARVVIGGIIRNDRDRVKMLEEIGR-SNARAVIVSIDSPGGTVTGAEQLYDALRQ 105

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           +  +KPV+  V  MAAS GY+ +  S+ IV+   ++VGSIGV+FQ+P V   L K+GV++
Sbjct: 106 LAAKKPVVAVVEGMAASGGYIAAIGSDHIVSRRNAMVGSIGVIFQFPNVTDLLGKIGVTV 165

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
           + +KSSP+KA P+ +   +P+A   +  +V  SY WF  LVSE R +   +   +SDGR+
Sbjct: 166 EDIKSSPLKAAPNGYQPTSPEARAAINSLVVDSYGWFKGLVSERRKLSDARLAEVSDGRV 225

Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK-------- 264
           +TG +   + L+D +G +      L          +++ W                    
Sbjct: 226 FTGHQGLALQLVDELGDERTARAWLAREKGVPENLRVRTWKSESMGSEFGWLRGAAGALA 285

Query: 265 -----NLSISSLLEDTIPLMKQTKVQGLWAVWN 292
                +     L + T    ++ ++ GL A+W 
Sbjct: 286 SALGFDTVAGILSQATQAAFEKAQLDGLLALWQ 318


>gi|67459158|ref|YP_246782.1| Signal peptide peptidase SppA [Rickettsia felis URRWXCal2]
 gi|67004691|gb|AAY61617.1| Signal peptide peptidase SppA [Rickettsia felis URRWXCal2]
          Length = 304

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 153/298 (51%), Gaps = 15/298 (5%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSW-----------SSHVEDNSPHVARIAIRGQIEDSQEL 53
            ++IK+R ++  L  + ++   +              +  N  ++A + I   I + ++ 
Sbjct: 11  RRQIKSRLLIWKLAAIILIAIVFLLVGKDFAPKEVLPINSNEDYIASVLIDEIILEDEKR 70

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
            +++++I  D    ALIV+++SPGG+    E I+  ++K+  +KPV+  +  MAAS GYL
Sbjct: 71  DKKLKKIIDDSHIKALIVNVNSPGGTVVGSEKIYNILRKISEKKPVVIVMGTMAASGGYL 130

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           IS   + I++   ++ GSIGV+ Q   V     KLG+   + KS  +KA P+P  ++   
Sbjct: 131 ISLGGDYIISHNGTITGSIGVILQTAEVTELAQKLGIKFNNFKSGELKAVPNPTEKLTEA 190

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
               + + ++ +Y++F+ LVSE RN+P ++   L+DGR+++G +A K+ L+D +G ++  
Sbjct: 191 VRVAIMENIEDTYNFFLELVSERRNLPIEEVKKLADGRVYSGRQALKLKLVDAIGSEDTA 250

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
            + L  +    +   +KD+         D+      S+     P   +    G+ A++
Sbjct: 251 LKWLQEVKKINANLLVKDYQLKPKPKLIDIILEDFDSIA----PSFFKNSFNGIKAIF 304


>gi|291276786|ref|YP_003516558.1| protease [Helicobacter mustelae 12198]
 gi|290963980|emb|CBG39819.1| protease [Helicobacter mustelae 12198]
          Length = 286

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 66/251 (26%), Positives = 126/251 (50%), Gaps = 3/251 (1%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
           F+ K  K    +L +V L   +F   +     + ++A+I + G I DS  + E+I++I  
Sbjct: 14  FITKYFKACIFLLIIVLL---FFFLHNDGGQKNANLAKIYLHGPIIDSTSIYEQIKKIKA 70

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           + +    ++ ++SPGG+  A   I   I+++  R PV+  V  + AS  Y     S  I 
Sbjct: 71  NPNIKGALLLINSPGGAVSASVEISDMIRELNQRIPVVAYVQGVMASGSYYGGMYSKQIF 130

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A   +L+GSIGV+F    ++  + K+GVS + V +   K   +P  +  P+    +++++
Sbjct: 131 ANRGALIGSIGVIFSSMNIQNLMQKIGVSQQGVSAGAYKEVGTPLRKWTPEEYAYIKNLI 190

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              Y  F+  VS++R +        ++G+I+T   A+K+GLID +GG ++  ++L     
Sbjct: 191 QEEYQMFIDDVSDARKLDKHNYKSFAEGKIFTAKNAQKLGLIDEIGGMDDAIEALKNFSH 250

Query: 243 DQSIRKIKDWN 253
            Q    ++   
Sbjct: 251 VQDPIWLEKSK 261


>gi|268589452|ref|ZP_06123673.1| signal peptide peptidase SppA [Providencia rettgeri DSM 1131]
 gi|291315117|gb|EFE55570.1| signal peptide peptidase SppA [Providencia rettgeri DSM 1131]
          Length = 618

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 70/282 (24%), Positives = 132/282 (46%), Gaps = 14/282 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           +++       +    + S ++A I ++G I D            +  +I     DD+  A
Sbjct: 311 ISIYDYSTKIADTNANQSGNIAVIVVQGAIMDGPQTAGIAGGDTIAAQIRDARLDDNIKA 370

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQ-KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ ++SPGGS  A + I   +       KPV+  +  MAAS GY +S  ++ I+A+  +
Sbjct: 371 IVLRVNSPGGSVSASDLIRSELASAHAAGKPVVVSMGGMAASGGYWVSTPADYIIASPNT 430

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +  LD +GV    V +SP+    S    ++P+   MMQ  +++ Y 
Sbjct: 431 LTGSIGIFGVINTFEKSLDSIGVYTDGVSTSPLAD-ISLTKGISPQFADMMQITIENGYE 489

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F+ LV++SR+    +   ++ GR+W G +A K GL+D +G  +        L     ++
Sbjct: 490 TFIGLVAKSRHKTPAEIDQIAQGRVWIGQDALKNGLVDQLGDFDNAVDKAAELAKLTDVK 549

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
              DW  P+  +   L  L +++ ++  +P +    +    A
Sbjct: 550 --LDWMKPELTFMDQLL-LELTTNVQAAMPDVLHVFLPPAVA 588



 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 99/288 (34%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH--VARIAIRGQIEDSQ------- 51
           + F+ + +     ++    +      + +  +    +     + ++G I D         
Sbjct: 19  LNFIREFVFNAIFLVLFFVVIGSIALYQTETQPEKNYFGALYVDLQGVIVDQVSTPDPFG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               ++++ I   + DD  T +++ L    G+       I +AI
Sbjct: 79  RMSRELLGTSNSRMQENSLFDIVDTIRTAANDDRITGMVLRLDDLAGADQPSLAYIGKAI 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
            + K+    +  +      + Y ++  ++ I       VG  G      Y K  L+KL V
Sbjct: 139 NEFKSSGKQVYAIGNSYNQSQYYLASYADEIYLTPQGAVGVYGFATNGLYYKSLLEKLKV 198

Query: 151 SIKSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   P    E++P+A    +  +D+ ++ ++  ++++RN    +     
Sbjct: 199 SSHIFRVGTYKSAVEPLMRDEMSPEARLANKQWLDALWNNYLTEIAKNRNTTSTQIFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L   +  +   A K  L+D +   E+V   L          K
Sbjct: 259 DAILEKLRSVKGDSAQYALKQKLVDKLYTNEQVEDLLSKHFGWNKEDK 306


>gi|237640201|ref|YP_002891056.1| peptidase S49 family protein [Escherichia coli]
 gi|237809921|ref|YP_002894360.1| peptidase S49 family protein [Escherichia coli]
 gi|237810110|ref|YP_002894549.1| peptidase S49 family protein [Salmonella enterica]
 gi|229561420|gb|ACQ77623.1| peptidase S49 family protein [Escherichia coli]
 gi|229561594|gb|ACQ77796.1| peptidase S49 family protein [Salmonella enterica]
 gi|229561776|gb|ACQ77977.1| peptidase S49 family protein [Escherichia coli]
 gi|332144543|dbj|BAK19763.1| peptidase S49 family protein [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 302

 Score =  143 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/284 (23%), Positives = 125/284 (44%), Gaps = 16/284 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSS----HVEDNSPHVARIAIRGQIE-----DSQELI 54
           +L+ ++    +L ++   ++  +         +  +PH A I IRG+I      D+  LI
Sbjct: 17  MLRVLRASGFVLLMIGFIILASNPGGMPWQSAKAGAPHTAYINIRGEIAAGTLADADHLI 76

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAG 111
             I+    + ++ A+++ ++SPGGS      I+  +   + +   K V   + ++ AS G
Sbjct: 77  PSIQAAFDNPNSQAIVLRINSPGGSPVQAGRIYDEVKAQRALHPEKKVYAIIDDIGASGG 136

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I A   SLVGSIGV+         +DKLG+  +++ S   KA   PFS + 
Sbjct: 137 YYIASAADEIYADRASLVGSIGVISSGFGFTGLMDKLGIERRAITSGEHKALLDPFSPLT 196

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
               +  + V+  ++  F+  V   R         +  G +W G +AK +GLID +G   
Sbjct: 197 SDMKKFWEGVLSKTHQQFIERVKAGRGDRLKDDPEVFSGLLWNGEQAKDIGLIDGLGSLN 256

Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
            V + +            +D              L  SS +++ 
Sbjct: 257 SVARDVIHQSNLVDYTPTEDIIRR----LTQRAKLEASSFVQEL 296


>gi|322832766|ref|YP_004212793.1| signal peptide peptidase SppA, 67K type [Rahnella sp. Y9602]
 gi|321167967|gb|ADW73666.1| signal peptide peptidase SppA, 67K type [Rahnella sp. Y9602]
          Length = 617

 Score =  143 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 74/279 (26%), Positives = 129/279 (46%), Gaps = 14/279 (5%)

Query: 21  TVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIV 71
           ++  +S     ++N P +A I   G I D +E           ++I     D    A+++
Sbjct: 310 SIYDYSPKPKPDNNDPQIAVIFATGAINDGEEQPGAVGGDTTAQQIRDARLDPKVKAIVL 369

Query: 72  SLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
            ++SPGGS  A E I   +   K   KPV+  +  MAAS GY IS  +N I+A+ ++L G
Sbjct: 370 RVNSPGGSVSASEVIRSELAAAKAAGKPVVVSMGGMAASGGYWISTPANYIIASPSTLTG 429

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIG+       +  LD  GV    V +SP+    +    + P+  QMMQ  +++ Y  F+
Sbjct: 430 SIGIFGVINTYQNTLDYAGVHTDGVATSPLAD-IASTKALPPEFSQMMQLNIENGYKTFL 488

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
            LV++SR+   ++   ++ G +W G++AK  GL+D +G  ++  +    L          
Sbjct: 489 GLVADSRHKTPEQIDQIAQGHVWIGSDAKANGLVDELGDFDDAVKKAAELAKLPK--WQL 546

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +W         DL    +S+ +   +P   Q  +    +
Sbjct: 547 NW-YVSEPSLSDLVFSQVSASVHAMLPAAIQAYLPAPVS 584



 Score = 98.9 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 106/302 (35%), Gaps = 44/302 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + FV + I   +++L ++    ++++      + +     + + G + D           
Sbjct: 19  LNFVREFILNVFLILIILAGVGIWYAVQDKPVETTQGALLVDLSGSVVDKPSVNNKVRQW 78

Query: 52  ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92
                             +L+E I     D + T +++ L+   G+  +  + I +A+++
Sbjct: 79  GRELLGTSSSRLQENSLFDLVETIRSAKDDKNVTGIVLQLTDFTGTDQSSLQYIGKALRE 138

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            ++    +  + +    + Y ++  +N I  +    V   G      Y K  LDKL V+ 
Sbjct: 139 FRDAGKPVYAIGDSYNQSQYYLASYANKIYLSPQGAVDLHGFATNNLYYKSLLDKLKVTT 198

Query: 153 KSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203
              +    K+   P    +++P A +     +   +  ++  VS +R I  ++       
Sbjct: 199 NIFRVGTYKSAVEPLIRDDMSPDAREADSRWIGGLWTNYLNTVSANRQITPEQLFPGAAG 258

Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPK 256
               +          A K  L+D +  + E    +           D +   I D++P  
Sbjct: 259 VLAGMQATGGDMAQYALKAKLVDALASRTEADNEMVKAFGWNKDTKDFNYTSIYDYSPKP 318

Query: 257 NY 258
             
Sbjct: 319 KP 320


>gi|113475281|ref|YP_721342.1| signal peptide peptidase A [Trichodesmium erythraeum IMS101]
 gi|110166329|gb|ABG50869.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49
           [Trichodesmium erythraeum IMS101]
          Length = 608

 Score =  143 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 125/248 (50%), Gaps = 9/248 (3%)

Query: 29  SHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGS 79
           S    ++  +A +  +G++              L +++ ++  D+   A+++ ++SPGGS
Sbjct: 313 SKNIKSNNKIAVVYAQGEVVNGSGTSRQIGGDRLAKKLRQLRLDEKVKAVVLRVNSPGGS 372

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           A A E I R ++ +   KPVI  +  +AAS GY IS  ++ IVA   ++ GSIGV     
Sbjct: 373 ASASEVISREVKLMSEEKPVIVSMGNIAASGGYWISMNADRIVAEVNTITGSIGVFGVLF 432

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            ++   ++ G++   VK        +         + ++Q +VDS Y  F++ V+ +RN+
Sbjct: 433 NIQEIANQNGITWDVVKIGKFADLNTTSRPKTEDELVLIQKMVDSIYERFIKNVATARNL 492

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
             +K   ++ GR+W+GA A+K+GL+D +GG E   +            KI+++   ++  
Sbjct: 493 APEKVEEIAQGRVWSGANAQKLGLVDEIGGIETAIKVAAEKAELGDSWKIEEYPKSRSLE 552

Query: 260 FCDLKNLS 267
               ++LS
Sbjct: 553 QQIFRSLS 560



 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 97/274 (35%), Gaps = 34/274 (12%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVEDNSPH-----VARIAIRGQIEDSQEL---------- 53
            T  + +    L     S +S  +D  P      +    +   I DS+ +          
Sbjct: 19  ITLIIGVGFGGLIFFVVSIASQTKDLGPQVEDKSILVFDLATSITDSRPISSTGEALQEA 78

Query: 54  --------------IERIERISRDDSATALIVSLSSPGG--SAYAGEAIFRAIQKVKNRK 97
                         I  +   ++D     + +  S+  G       + I +A+Q+ +   
Sbjct: 79  LSSDQATTITLRKAINTLNAAAKDKKIIGIYIKGSNAPGVTGLANLQEIRQALQRFRETG 138

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I           Y +S  ++ I      ++   G+  +  ++   LDK G+ ++  K 
Sbjct: 139 KTIIAYDMDWTEREYYLSSVADEIAINPLGVLEFNGLSSETMFLSGALDKFGIGVQVTKV 198

Query: 158 SPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWT 214
              K+   PF   +++P+  Q    ++   +  +++ V+ SR    ++   ++D   I  
Sbjct: 199 GKYKSATEPFLREKMSPENRQQTLQLLQDIWGQYLQTVATSRKSTTEQLQAIADNQGILM 258

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
              A +  L+D V   +EV + L  L   +   K
Sbjct: 259 ANNALQSKLVDRVVYYDEVLKKLKELTGIEEDDK 292


>gi|254828180|ref|ZP_05232867.1| peptidase [Listeria monocytogenes FSL N3-165]
 gi|258600567|gb|EEW13892.1| peptidase [Listeria monocytogenes FSL N3-165]
          Length = 337

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 72/280 (25%), Positives = 134/280 (47%), Gaps = 19/280 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76
            E  +  +A +++ G I+D+ +               ++++ER+  DD+   +++ ++SP
Sbjct: 56  EEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLERVRNDDNIQGVLLYVNSP 115

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG       I   I +++  +  P    +  MAAS GY IS  ++ I A++ +L GS+GV
Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPTDKIFASKETLTGSLGV 175

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           + Q       + KLGVS  ++KS   K   S    +     ++MQ ++D SY+ FV++V+
Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           + R +  ++   ++DGRI+ G +AK+ GLID  G QE+  ++L           I+   P
Sbjct: 236 QGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALEALKKEQGLAGATVIQYNAP 295

Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291
                   +    IS   + +   I L    K   +  ++
Sbjct: 296 GDFSSLFSVTAQKISGQNADISQLIKLTGTLKAPRMMYLY 335


>gi|226224186|ref|YP_002758293.1| protease [Listeria monocytogenes Clip81459]
 gi|254931525|ref|ZP_05264884.1| peptidase [Listeria monocytogenes HPB2262]
 gi|225876648|emb|CAS05357.1| Putative protease [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|293583079|gb|EFF95111.1| peptidase [Listeria monocytogenes HPB2262]
 gi|332312027|gb|EGJ25122.1| Putative signal peptide peptidase sppA [Listeria monocytogenes str.
           Scott A]
          Length = 337

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 71/280 (25%), Positives = 133/280 (47%), Gaps = 19/280 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76
            E  +  +A +++ G I+D+ +               ++++E++  DD    +++ ++SP
Sbjct: 56  EEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLEQVRNDDYIQGVLLYVNSP 115

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG       I   I +++  +  P    +  MAAS GY IS  ++ I A++ +L GS+GV
Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           + Q       + KLGVS  ++KS   K   S    +     ++MQ ++D SY+ FV++V+
Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           + R +  ++   ++DGRI+ G +AK+ GLID  G QE+  ++L           I+   P
Sbjct: 236 QGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALEALKKEQGLADATVIQYDTP 295

Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291
                   +    IS   + +   I L    K   +  ++
Sbjct: 296 ENFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYLY 335


>gi|120609865|ref|YP_969543.1| peptidase S49 [Acidovorax citrulli AAC00-1]
 gi|120588329|gb|ABM31769.1| peptidase S49 [Acidovorax citrulli AAC00-1]
          Length = 350

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 65/279 (23%), Positives = 121/279 (43%), Gaps = 7/279 (2%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISRD 63
           +  +++  +    V+     +    ++PH A + I+G+I    E     ++  +     D
Sbjct: 72  RMAWLVFLVAVAWVLLARDVAAPSKSTPHTAVVDIKGEIASGAEASAEFVVAAMRSAFED 131

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNII 121
             + A+++ ++SPGGS      I   I ++K +  KPV   V E  ASA Y I+  ++ I
Sbjct: 132 SGSQAVVLLINSPGGSPVQAGIINDEILRLKAKYNKPVYAVVEETCASAAYYIAAGADQI 191

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
              + S+VGSIGVL         ++KLGV  + + +   K    PFS ++ K     Q +
Sbjct: 192 FVDKASIVGSIGVLMDGFGFTGTMEKLGVERRLLTAGENKGFLDPFSPMSEKQRTYAQAM 251

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           +D  +  F+++V + R      T     G  WTG +A  +GL D +G  + V + +    
Sbjct: 252 LDQIHQQFIQVVQKGRGDRLKPTADTFSGLFWTGQQAVDMGLADHLGNLDYVAREVVKAE 311

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
                 +  +        F      +    L  ++P ++
Sbjct: 312 DIIDYTRRDNVAERLVKKFGAAMGETAIRALGASLPAVR 350


>gi|326316008|ref|YP_004233680.1| peptidase S49 [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372844|gb|ADX45113.1| peptidase S49 [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 350

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 65/279 (23%), Positives = 120/279 (43%), Gaps = 7/279 (2%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISRD 63
           +  +++  +    V+     +    ++PH A + I+G+I    E     ++  +     D
Sbjct: 72  RMAWLVFLVAVAWVLLARDVAAPSKSTPHTAVVDIKGEIASGAEASAEFVVAAMRSAFED 131

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNII 121
             + A+++ ++SPGGS      I   I ++K +  KPV   V E  ASA Y I+  ++ I
Sbjct: 132 SGSQAVVLLINSPGGSPVQAGIINDEIIRLKAKYNKPVYAVVEETCASAAYYIAAGADQI 191

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
              + S+VGSIGVL         ++KLGV  + + +   K    PFS ++ K     Q +
Sbjct: 192 FVDKASIVGSIGVLMDGFGFTGTMEKLGVERRLLTAGENKGFLDPFSPMSEKQRTYAQAM 251

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           +D  +  F+ +V + R      T     G  WTG +A  +GL D +G  + V + +    
Sbjct: 252 LDQIHQQFIHVVQKGRGDRLKPTADTFSGLFWTGQQAVDMGLADHLGNLDYVAREVVKAE 311

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
                 +  +        F      +    L  ++P ++
Sbjct: 312 DIIDYTRRDNVAERLVKKFGAAMGETAIRALGASLPAVR 350


>gi|198275373|ref|ZP_03207904.1| hypothetical protein BACPLE_01534 [Bacteroides plebeius DSM 17135]
 gi|198271709|gb|EDY95979.1| hypothetical protein BACPLE_01534 [Bacteroides plebeius DSM 17135]
          Length = 586

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 82/271 (30%), Positives = 136/271 (50%), Gaps = 12/271 (4%)

Query: 27  WSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPG 77
            ++        VA     G+I          +S+++ + +  + +D +  A+++ ++SPG
Sbjct: 295 SATPKSKTRDVVAVYYAYGEIDNGSSYDEGINSEKVTKDLRDLRKDKNVKAVVLRVNSPG 354

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           GSAY  E I+R +  +K  KPV+  + + AAS GY ISCA+N IVA  T+L GSIG+   
Sbjct: 355 GSAYGSEQIWREVTLLKAEKPVVVSMGDYAASGGYYISCAANKIVAEPTTLTGSIGIFGM 414

Query: 138 YPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
            P     L +KLG+    VK+  M    S     N +   +MQ +V+  Y  F +  +E 
Sbjct: 415 MPDASELLTNKLGLHFDGVKTHKMADMGSMSRPFNAEESALMQQMVNQGYALFTKRCAEG 474

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           RNIP ++   +++GR+WTG+ AK++ L+D +GG +   Q    LG  +   K+K + P K
Sbjct: 475 RNIPLEELCKIAEGRVWTGSMAKELKLVDELGGLDTAIQLAAELGKVKD-YKLKSY-PAK 532

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
             +  +L N      +   +        QG 
Sbjct: 533 QDFLTELLNTRADRYIHGQLQETFGEYYQGF 563



 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 105/263 (39%), Gaps = 23/263 (8%)

Query: 10  TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DS 50
             +++L +  L  +  S  S        V  + ++G ++                     
Sbjct: 20  FIFIILGVTMLAGIVASSESETLVMPNSVFTLELKGTVQERYQPSPVDQFFEDQISTYGL 79

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           ++++  I++   ++    + +   +   S  + +AI RA+   K     +    +M    
Sbjct: 80  EDILNSIQKAKENEQIKGIYLHTGALACSTASLQAIHRALTDFKQSGKFLIAYADMYTQG 139

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168
           GY ++  ++ ++      +   G+  +  ++K FL K+GV ++  +    K+   P   +
Sbjct: 140 GYYLASVADKVIVNPVGSLSWHGLASETMFLKDFLVKIGVKMQIFRVGTYKSAVEPMTNT 199

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD--GRIWTGAEAKKVGLIDV 226
           E++P   +  Q  ++S++   V  V+ SRNI  D   +L+D    +    +    GL D 
Sbjct: 200 EMSPANREQTQAFLESTWKSIVDDVAASRNISVDSLNLLADKNMDLRPAEDYVHCGLADT 259

Query: 227 VGGQEEVWQSLYALGVDQSIRKI 249
           +  ++EV   L +L        +
Sbjct: 260 LMYKDEVLSYLKSLAGLTEEDDL 282


>gi|71065346|ref|YP_264073.1| signal peptide peptidase [Psychrobacter arcticus 273-4]
 gi|71038331|gb|AAZ18639.1| probable signal peptide peptidase [Psychrobacter arcticus 273-4]
          Length = 351

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 130/292 (44%), Gaps = 15/292 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHV----EDNSPHVARIAIRGQIEDSQ-----ELI 54
             K +   Y++L  +T+     + +       + N PH+A + I+G I         ++ 
Sbjct: 56  FFKLLTFGYILLIFLTIGRSCSTEAPTALDGIDTNKPHLAVVEIQGTISSGDVANAYDVN 115

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA---IQKVKNRKPVITEVHEMAASAG 111
           + + R   + ++ A+ + ++SPGGS    + I++    ++K    K +   + +M AS  
Sbjct: 116 DALTRAFENSNSKAVALDINSPGGSPVQSDEIWQTMMDLRKQYPDKKLYAVIGDMGASGA 175

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I    +SLVGSIGV+     VK  +DK+GV  +++ +   K   S    + 
Sbjct: 176 YYIASAADEIYVNPSSLVGSIGVIMPSYNVKGLMDKVGVEDRTITAGEYKDILSLSRPLT 235

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGG 229
               Q ++ V+D+++  F+  V E R       +   L  G  WTG ++ ++GL D  G 
Sbjct: 236 DYEEQHVEKVLDNTHKHFINAVKEGRGDRLKNPEQNKLFSGLFWTGEQSIELGLADKKGS 295

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
              + + L  L    +      +    + +   L     SS+  D +P  + 
Sbjct: 296 ISSLEKQL-KLNNVVNYTPSDPFQLFMDRFAVKLGAGVGSSINLDLLPQEEG 346


>gi|262198128|ref|YP_003269337.1| signal peptide peptidase SppA, 36K type [Haliangium ochraceum DSM
           14365]
 gi|262081475|gb|ACY17444.1| signal peptide peptidase SppA, 36K type [Haliangium ochraceum DSM
           14365]
          Length = 875

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 117/286 (40%), Gaps = 16/286 (5%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE---------------D 49
           L+ +  R        L +             P VA IA+ G I                 
Sbjct: 547 LEDVGARVFADVGAILPLAAAPRERPEAWAQPAVAVIALEGDIVAGPSAGLPLLGRRVAG 606

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           S+ L++ I     +    A+++ + SPGGSA A   I R + K +  KP++  +   AAS
Sbjct: 607 SETLVQAIAWARHNPRIQAIVLRIDSPGGSAVASALIAREVFKTRGVKPIVCSLGNAAAS 666

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
            GY  +   + I A  T++ GSIGV      +   L +LGVS +  +     +  S    
Sbjct: 667 GGYYAAAGCDQIFAEATTITGSIGVFSGKFDISGLLTRLGVSWQLYERGAHASMNSMLRP 726

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
              +   ++++ +  SY  F+  V+  RN+  D+   +  GR+WTG +AK VGL+D +GG
Sbjct: 727 FTTEERALLENQLRDSYERFIDTVASGRNMTPDQVDEIGRGRVWTGQQAKAVGLVDDIGG 786

Query: 230 QEEVWQSLYALGVDQSIRKIKD-WNPPKNYWFCDLKNLSISSLLED 274
             +   +          ++++  W P +           + +    
Sbjct: 787 LLDALSAAKHRAGLLPEQRVELVWLPEEPRGLARWLMQQVGASAGG 832



 Score = 68.9 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 77/193 (39%), Gaps = 7/193 (3%)

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
           ++  ++RDDS   + V ++ P       E +  A+ +++     +       +   Y I+
Sbjct: 368 QLRLLARDDSVAGVFVQIADPVEGWAQAEELRGALGELRRAGKKVYAYLVSGSMRDYFIA 427

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDK--LGVSIKSVKSSPMKAEPSPFSEVNPK 173
             ++ I       +  +G+     Y+   L++  +    + ++      E       +  
Sbjct: 428 TGADKIYLDPAGGLDFVGLSATSLYLGEALERAGVAAEFEKIEEYKSAPETFTQDGPSEA 487

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVG----LIDVVGG 229
           A++M  ++ DS +   V  ++E+R +  D    L D   +T   A + G    L+D V  
Sbjct: 488 ALRMRNELYDSVFAELVTRIAEARKLDADTVEALIDEGPYTAE-ALQRGTAALLVDEVVT 546

Query: 230 QEEVWQSLYALGV 242
            E+V   ++A   
Sbjct: 547 LEDVGARVFADVG 559


>gi|218442231|ref|YP_002380560.1| signal peptide peptidase SppA, 36K type [Cyanothece sp. PCC 7424]
 gi|218174959|gb|ACK73692.1| signal peptide peptidase SppA, 36K type [Cyanothece sp. PCC 7424]
          Length = 274

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 76/270 (28%), Positives = 144/270 (53%), Gaps = 10/270 (3%)

Query: 32  EDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
              S  +ARI I G I     +++++ ++++ +     AL++ + SPGG+    + I++A
Sbjct: 7   PKASKQIARIEITGVIASETRKQVLKALDKVEQ-KKYRALLLRIDSPGGTVGDSQEIYQA 65

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           ++++ ++  ++     ++AS G  I   +  IVA   ++ GSIGV+ +   ++  LDK+G
Sbjct: 66  LRRLHDKVKIVASFGNISASGGVYIGMGAQHIVANPGTITGSIGVIIRGNNLERLLDKIG 125

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +S K VKS P K   S   E+  +   ++Q+++D SY  FV+ V++SRN+P +     +D
Sbjct: 126 ISFKVVKSGPYKDILSFDRELTSEEQGILQEMIDISYQQFVQTVAQSRNLPLETVKTFAD 185

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR----KIKDWNPPKNYWFCDLKN 265
           GRI+TG +A ++G+ID +G +E+  + L  L      +     I++  P  N      ++
Sbjct: 186 GRIFTGEQALELGVIDRLGTEEDARRWLAELVGLAPDKTKCQTIEEPKPLLNRILGGRRS 245

Query: 266 LSISSLLEDT--IPLMKQTKVQGLWAVWNP 293
            + SSL      +     T  Q LW ++ P
Sbjct: 246 QTKSSLGAALNWVEFELATNNQPLW-LYRP 274


>gi|170720705|ref|YP_001748393.1| signal peptide peptidase SppA, 36K type [Pseudomonas putida W619]
 gi|169758708|gb|ACA72024.1| signal peptide peptidase SppA, 36K type [Pseudomonas putida W619]
          Length = 341

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 133/294 (45%), Gaps = 18/294 (6%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIE 58
           +  K+ T   +  ++ L + +         ++ H A + +RG I D     +  L++ + 
Sbjct: 55  IFFKLLTFVYLFGVLALFLPWTDMDKAASRSASHTALVEVRGVIADQEAASADNLVKSLR 114

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT---EVHEMAASAGYLIS 115
              +D    A+++ ++SPGGS      ++  I++++   P I     + ++ AS  Y I+
Sbjct: 115 EAFKDPKTKAVVMRINSPGGSPVQAGYVYDEIRRLRGEYPDIKLYAVIADLGASGAYYIA 174

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I A + SLVGSIGV          ++KLGV  ++  +   KA   PFS   P+  
Sbjct: 175 SAADEIYADKASLVGSIGVTAAGYGFVGSMEKLGVERRTYTAGEHKAFLDPFSPEKPEER 234

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
              Q V+++++  F+ +V + R           L  G +W+G +AK +GL+D +G    V
Sbjct: 235 AFWQGVLNTTHQQFIAMVKQGRGDRLKDKEHPELFSGLVWSGEQAKALGLVDGLGSASYV 294

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
            + +         + + D+   ++ +    K +  S  + + + +    +   L
Sbjct: 295 AREIVG------EKDLVDFTVEESPFDRFSKRIGAS--VAEKLAMYMGFQGPAL 340


>gi|83718579|ref|YP_442246.1| peptidase, U7 family protein [Burkholderia thailandensis E264]
 gi|257138439|ref|ZP_05586701.1| peptidase, U7 family protein [Burkholderia thailandensis E264]
 gi|83652404|gb|ABC36467.1| peptidase, U7 family protein [Burkholderia thailandensis E264]
          Length = 333

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 123/274 (44%), Gaps = 17/274 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           +I  R+  L+++      F   S       +  H A + I G+I      +++++   ++
Sbjct: 48  RIFFRFAFLAVLGALAFAFLSVSGDGSKLASGRHTAVVTIDGEIAASTNANAEDINTALD 107

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115
               D     +++ ++SPGGS      ++  I++++ +   KP+   V +M AS GY I+
Sbjct: 108 SAFEDSGTVGVVLKINSPGGSPVQAGIVYDEIRRLRKKYPAKPLYVVVSDMCASGGYYIA 167

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         +DKLGV  +   S   K    PFS   PK  
Sbjct: 168 AAADKIYVDKASIVGSIGVLMDGFGFTGLMDKLGVERRLHTSGENKGFFDPFSPETPKMD 227

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q+++D  +  F++ V + R     ++  +  G  WTGA++ ++GL D  G  + V +
Sbjct: 228 AHAQEMLDEIHAQFIKAVKDGRGARLHESPDIFSGLFWTGAKSIELGLADDYGTTDSVAR 287

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
            +           + D+   ++      +    +
Sbjct: 288 DVLK------APDLVDYTVKESLTDRVARRFGAA 315


>gi|218245277|ref|YP_002370648.1| signal peptide peptidase SppA, 36K type [Cyanothece sp. PCC 8801]
 gi|218165755|gb|ACK64492.1| signal peptide peptidase SppA, 36K type [Cyanothece sp. PCC 8801]
          Length = 272

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 133/268 (49%), Gaps = 6/268 (2%)

Query: 31  VEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
                  +ARI I G I     Q +++ + +  +D    AL++ + SPGG+    + I+ 
Sbjct: 6   KPSTRKQIARIEITGAIASETRQTVLKAL-KTVKDKKFPALLLRIDSPGGTVADSQEIYE 64

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
           A+++++    ++     ++AS G  I   +  IVA   ++ GSIGV+ +   ++  LDK+
Sbjct: 65  ALKELRKSVKIVASFGNISASGGVYIGVGAEYIVANPGTITGSIGVILRGNNLERLLDKV 124

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           G+S K +KS P K   S   E+  +   ++Q+++D SY  FV  V++ RN+  +K    +
Sbjct: 125 GISFKVIKSGPYKDILSFDRELTQEEQTILQEMIDVSYQQFVTTVAQGRNLSVEKVKSFA 184

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLS 267
           DGRI+TG +A ++G++D +G +E+  +    L   +    +      PK  W   L    
Sbjct: 185 DGRIFTGQQALELGVVDRLGTEEDARRWAAELAGLKPDQAQCYTIEEPKPLWNRLLSRNQ 244

Query: 268 ISSLLEDTIPLMK-QTKVQG-LWAVWNP 293
            S  L   I  +K +    G L  ++ P
Sbjct: 245 SSKGLGTAIDWVKFELATNGQLLWLYRP 272


>gi|114706455|ref|ZP_01439357.1| protease IV [Fulvimarina pelagi HTCC2506]
 gi|114538316|gb|EAU41438.1| protease IV [Fulvimarina pelagi HTCC2506]
          Length = 312

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 88/268 (32%), Positives = 158/268 (58%), Gaps = 6/268 (2%)

Query: 32  EDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
                 +AR++I G I + ++++E ++++  ++   A++V ++SPGG+   GEA++ A++
Sbjct: 43  PTGGDQIARVSIEGMITEDRKMLELLDKLKTEEEVLAVVVRINSPGGTTVGGEALYEAVR 102

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           ++   KPV  EV  +AASAGY+++ A++ IVA  TS+VGSIGVLFQY      LDK+GV 
Sbjct: 103 EIAEVKPVAAEVGTLAASAGYMVAAATDHIVARRTSIVGSIGVLFQYADASVLLDKIGVE 162

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
           + + KSSP+KAEPSPF    P+A++M+ +++  +Y WF  +V E R +   +   + D  
Sbjct: 163 VDARKSSPIKAEPSPFGPAPPEALEMIDELIMDTYAWFRDIVGERRGLSRSELAAVDDAS 222

Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP-----PKNYWFCDLKNL 266
           +++G +  +  L+D +GG+E + Q L          +  +  P     P ++    +  L
Sbjct: 223 VFSGRQGVERKLVDAIGGEEIIRQWLEDDRDIPKGLEFVEREPEDEDTPLSFLTESIAAL 282

Query: 267 SISSLLEDTIPL-MKQTKVQGLWAVWNP 293
             S  L  +IP+ ++  ++ GL ++W P
Sbjct: 283 GTSFGLSQSIPISVRSLELDGLVSLWQP 310


>gi|313892633|ref|ZP_07826220.1| signal peptide peptidase SppA, 36K type [Dialister microaerophilus
           UPII 345-E]
 gi|313119030|gb|EFR42235.1| signal peptide peptidase SppA, 36K type [Dialister microaerophilus
           UPII 345-E]
          Length = 316

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 141/300 (47%), Gaps = 26/300 (8%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHV-----EDNSPHVARIAIRGQI-------------- 47
           KI    +++  +   V+ F     V     ++N+ +VA + I G I              
Sbjct: 8   KITLAVIIVLFILAIVINFVGMKDVSSFANKNNNKYVAVVRIDGPIYGGDVNQNMLGGVS 67

Query: 48  -EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHE 105
              S++++  +   +RD +A A+++ ++SPGG+  A + I   I KV+N  KPVI  + +
Sbjct: 68  GSSSEDIMYELREATRDPNAKAVLLRINSPGGTTGATQEIAEEIDKVRNSGKPVIVSMGD 127

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
             ASAGY ++   + I A+  ++ GSIGV   Y  V   +DKLGV  + +KS   K   S
Sbjct: 128 TCASAGYWLASKGDYIFASPATITGSIGVYMDYTNVSELMDKLGVKNEKIKSGTHKDILS 187

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
            +  +  +   ++Q +VD  Y+ FV+ +++ R++   K   ++DGRI TG +A+  GL+D
Sbjct: 188 MYRPITDEEKTILQKMVDDIYNQFVQTIADGRHLEEAKVREIADGRILTGKQAQAYGLVD 247

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
            +G   +            S     D  P ++Y         +S+ + +T        V 
Sbjct: 248 AMGNYYDALTYAGNRVGINS-----DVIPTRSYSKGMTLRGLLSAEMNNTAQNFASRIVD 302


>gi|15615760|ref|NP_244064.1| proteinase IV [Bacillus halodurans C-125]
 gi|14548271|sp|Q9K809|SPPA_BACHD RecName: Full=Putative signal peptide peptidase sppA
 gi|10175821|dbj|BAB06917.1| proteinase IV [Bacillus halodurans C-125]
          Length = 331

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 132/283 (46%), Gaps = 22/283 (7%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLS 74
               D    +A + + G I+D+              ++ ++++E+   D +   +I+ ++
Sbjct: 49  ETGTDFGKSIAILELSGVIQDTGSAPSLLNTGVYHHRDFLKQLEKAGEDPNIAGIILQVN 108

Query: 75  SPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           +PGG       I + ++++   + KPV   +  MAAS GY IS  +  I A   ++ GSI
Sbjct: 109 TPGGGVLESAEIHKQVEEIVQDSEKPVYVSMGNMAASGGYYISAPATKIYAHPQTITGSI 168

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GV+ Q   +    + LG+   + KS P K   S   EV  +   ++Q +VD  Y  FVR+
Sbjct: 169 GVIMQSIDISGLAENLGIEFNTFKSGPYKDILSQTREVTDEEEDILQTLVDEMYDEFVRV 228

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           + + R +   +   L+DGRI+TG++A   GL+D +GG ++V +S+       +   +  +
Sbjct: 229 IVDGRGMSETEVRELADGRIYTGSQAVATGLVDELGGLDDVIESMKEDLG--ADYNVIRY 286

Query: 253 NPPKNYWFCDLKN----LSISSLLEDTIPLMKQTKVQGLWAVW 291
                 +     +    LS S  L+    L+ Q+    L  ++
Sbjct: 287 EHSLGLYDFFSMSTNRLLSPSYELQSIERLLNQSNTPTLQYLY 329


>gi|330997115|ref|ZP_08320968.1| signal peptide peptidase SppA [Paraprevotella xylaniphila YIT
           11841]
 gi|329570910|gb|EGG52617.1| signal peptide peptidase SppA [Paraprevotella xylaniphila YIT
           11841]
          Length = 587

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 127/279 (45%), Gaps = 14/279 (5%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIED-----SQELIER------IERISRDDSATALIVS 72
             + +         +A     G I D     S+ +I+       +  +  D+S  A+++ 
Sbjct: 290 LAAATETTPKKGDKIAVYYAYGDIVDRKTEWSENVIDAETVCHDLRTLREDESVKAVVLR 349

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           ++S GGSAYA E I+  ++ ++  KPV+  +  MAAS GY ISCA+N IVA  T+L GSI
Sbjct: 350 INSGGGSAYASEQIWHEVKLLRKAKPVVVSMGGMAASGGYYISCAANYIVAEPTTLTGSI 409

Query: 133 GVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           G+    P     L DKLG+    VK++      +P    NP   QMMQ  +   Y  F  
Sbjct: 410 GIFGLIPDASQLLSDKLGLHFDVVKTNAHADFGTPARPFNPSEAQMMQGYIQRGYKLFTE 469

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
            V+E RN+   +   L++GR+WTG +A + GL D  G  +   +   +L   +      +
Sbjct: 470 RVAEGRNMETSQVEKLAEGRVWTGQQAVENGLADANGNLQTAIKKAASLAKIKDYHT--E 527

Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
           + P    W+  L +      L   +     T    L  +
Sbjct: 528 YAPTPAPWYEGLFDQQKKDYLNTALQETLGTYYAPLMNL 566



 Score = 88.5 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 91/259 (35%), Gaps = 24/259 (9%)

Query: 11  RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------------Q 51
               L ++++  +    S+        V R+ + G++++                    +
Sbjct: 21  ALFTLGILSIAGMMTMESTAPSIKPQSVLRLTLNGELQEDAPNDPLGDLFGSTYPTLSLR 80

Query: 52  ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           E+   I+    + +   + +   +  G +      I  ++   K     I    +     
Sbjct: 81  EIQTAIQGAKENPNIDGIYIEAQTLLGATPAMIRDIRESLADFKKSGKYIIAYGDNYTQG 140

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168
            Y I   ++ I+      V   G+  Q  + K  L+K+G+ ++  K    K+   PF  +
Sbjct: 141 AYYICSIADSIILNPQGQVNWCGMASQPIFYKDLLEKIGIKMQVFKVGSYKSAVEPFTAT 200

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLIDV 226
           +++    + +   ++  +   +  VS SR+I  D     +D         E  + G++D 
Sbjct: 201 QMSDANREQVTSYLNDIWQTMLTDVSRSRSIKKDLLDEYADSMLTFRPAEELVRNGMVDS 260

Query: 227 VGGQEEVWQSLYALGVDQS 245
           +   + + + L A      
Sbjct: 261 LCYIDGISRMLRAKTGKDK 279


>gi|209517241|ref|ZP_03266086.1| peptidase S49 [Burkholderia sp. H160]
 gi|209502377|gb|EEA02388.1| peptidase S49 [Burkholderia sp. H160]
          Length = 333

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 125/289 (43%), Gaps = 16/289 (5%)

Query: 7   KIKTRYVMLSLVTLTV--VYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIER 59
           +I  R+V L+++ L V  V       V     H A +++ G+I      +++++   ++ 
Sbjct: 49  RIFFRFVFLAVLALAVWGVLNFSGERVATTGRHTAMVSLNGEIATDTSANAEDINTALDS 108

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISC 116
              D     +I+  +SPGGS      I   I++++ + P I     V +M AS GY  + 
Sbjct: 109 AFEDSDTAGVILYCNSPGGSPVQAGIINSEIRRLRGKYPSIPLYVVVGDMCASGGYYAAA 168

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
           A+  I   + S+VGSIGVL         +DKLG+  +   +   K    PFS   PK   
Sbjct: 169 AAEKIYVDKASIVGSIGVLMDSFGFTGLMDKLGIQRRLHTAGENKGFFDPFSPETPKMDT 228

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           + QD++D  +  F+  V + R     +T  +  G  WTG ++ ++GL D +G  + V + 
Sbjct: 229 IAQDMLDQIHAQFIDAVRQGRGKRLHETPDMFSGLFWTGQKSVELGLADGLGDADYVARE 288

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           ++          I D+   ++      +    +        +    K+ 
Sbjct: 289 IFK------APDIVDYTVKESITDRVARKFGAAVGAGAVRAMALGEKLN 331


>gi|300771388|ref|ZP_07081264.1| signal peptide peptidase SppA [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300762058|gb|EFK58878.1| signal peptide peptidase SppA [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 589

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 70/258 (27%), Positives = 124/258 (48%), Gaps = 12/258 (4%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSAT 67
             T++++ +  +S   +    VA +   G I           S ++   + ++  DD   
Sbjct: 287 FSTVSILDYRANSTTSEGEGRVAVLYAEGDIVSGEGESGQIASDKVSRELRKLREDDRVK 346

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           A++  ++SPGGSA A + I+R +   K  KP+I  + + AAS GY IS A++ I A + +
Sbjct: 347 AVVFRVNSPGGSALASDVIWREVVLTKKVKPIIVSMGDYAASGGYYISAAADSIFAEKNT 406

Query: 128 LVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPS-PFSEVNPKAVQMMQDVVDSS 185
           + GSIGV    P  K  L DKLG+    VK+       S P   +  +   ++Q  V+ +
Sbjct: 407 ITGSIGVFGLIPNFKGLLNDKLGIHFDGVKTGTYADLMSSPDRPLTAEERNIIQLEVNKT 466

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  F + V+E R +       +  GR+WTG +A ++GL+D +G   +  +S   +   + 
Sbjct: 467 YGSFTKKVAEGRKLSVANVDSIGQGRVWTGEQAVEIGLVDRIGSIGDAIRSAAKMAKLKD 526

Query: 246 IRKIKDWNPPKNYWFCDL 263
             K+  +   K+ +   L
Sbjct: 527 -YKVVKYPSLKDPFSSIL 543



 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 98/270 (36%), Gaps = 25/270 (9%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------------- 47
           V+  I    V+  ++   +   S  +        V  I +  +I                
Sbjct: 16  VIATIILFIVIAGIIGSLISSASTDAAPVVADNSVLYITLNHEIKERSETNPLEGVDIPG 75

Query: 48  ------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
                     +++ERI+    D     + +++S         + I  A+   K  K  I 
Sbjct: 76  FGTTKTLGLDDILERIQSAKSDSKIKGIYLNISGANTGFATLQEIRDALIDFKASKKFIV 135

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
              E      Y ++  ++ I       +   G+     ++K  LDKLGV ++ VK    K
Sbjct: 136 SYSEGYTQKAYYLASVADKIYLNPEGSLDFRGLSTSIMFMKDALDKLGVDMQVVKVGTYK 195

Query: 162 AEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEA 218
           +   PF    ++      ++  + S Y  F+  VS SR +P D    ++D   +    +A
Sbjct: 196 SAVEPFMLNGMSQPNRLQVESYLGSLYTTFLDNVSASRKVPVDSLRAIADRYAVRDAEDA 255

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            ++ L+D V  ++E+   +      +  +K
Sbjct: 256 VRLKLVDAVLYKDELIDEVKKRLNIKDKKK 285


>gi|20092840|ref|NP_618915.1| proteinase IV [Methanosarcina acetivorans C2A]
 gi|19918143|gb|AAM07395.1| proteinase IV [Methanosarcina acetivorans C2A]
          Length = 394

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 69/264 (26%), Positives = 125/264 (47%), Gaps = 15/264 (5%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWS---SHVEDNSPHVARIAIRGQI-----------EDS 50
                    +++++ +++    +          S  +A I ++G +             S
Sbjct: 91  RSYFLVLLALIAVIAVSMAAIFYGLGFGGDFGTSEKIAVIYVQGSMLTGNVPSGLGYATS 150

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAAS 109
           +E+ E I     D++  A+++ ++SPGGS  A + I   I+K + +  PV+  + ++AAS
Sbjct: 151 EEISENIHSAVADENVKAIVLRINSPGGSPAAAQEISIEIEKAQEKGIPVVVSMGDLAAS 210

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A Y IS  ++ I A  ++  GSIGV++ +  +  + ++ GV     KS   K   S +  
Sbjct: 211 AAYYISAPADYIYANPSTSTGSIGVIWTFENMSSYYEREGVEYYISKSGEFKDMGSSWRG 270

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
           +  +  +    VV  SY  FV  V+E RN+   +   L+DGRI+TG +AK++GL+D  G 
Sbjct: 271 LTDEEKEYADSVVMESYDDFVGQVAEGRNMSRSEVKELADGRIYTGTKAKELGLVDGFGN 330

Query: 230 QEEVWQSLYALGVDQSIRKIKDWN 253
             +       LG  Q   K+   N
Sbjct: 331 LYDAIDKAAELGSIQGEPKVVYMN 354


>gi|54294636|ref|YP_127051.1| hypothetical protein lpl1713 [Legionella pneumophila str. Lens]
 gi|53754468|emb|CAH15952.1| hypothetical protein lpl1713 [Legionella pneumophila str. Lens]
          Length = 318

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 129/291 (44%), Gaps = 23/291 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWS-------SHVEDNSPHVARIAIRGQIEDS-----QEL 53
           +K + ++++ +++ + +VY S+        +    +  H+  I I G+I DS        
Sbjct: 30  RKRRWKWIIRAIILVVLVYSSYKIVSVAKTTEASKDKEHIGLIDINGEIADSSSASADNF 89

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASA 110
            + IE+  R     ALIV ++SPGGS    E I+  +   + +K          +M ASA
Sbjct: 90  TKGIEKAYRSKGLKALIVRINSPGGSPVQAEYIYNVLQYYKSLKPNIKTYAVCVDMCASA 149

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
            Y ++  ++ I A+  S+VGSIGVL+        L KLG+S +   S   KA   PFS  
Sbjct: 150 AYYVAVGADEIYASPASMVGSIGVLYNGFGFVDALQKLGISRRLQTSGVNKAFLDPFSPT 209

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                + +Q ++D  +  F+  V E R            G  WTG +A   GLID     
Sbjct: 210 TEFQKEKLQTMLDIVHKQFITRVKEGRGNRLHVDDETFSGLFWTGEQALANGLIDGYASS 269

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
            ++ + +        I  I D+   +N +    KNL  +  + D +P++  
Sbjct: 270 GQLAREVIK------ITDIVDYTYKQNVFDRLTKNLGTA--MADELPVILG 312


>gi|300311214|ref|YP_003775306.1| periplasmic serine protease [Herbaspirillum seropedicae SmR1]
 gi|300073999|gb|ADJ63398.1| periplasmic serine protease (ClpP class) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 343

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 128/289 (44%), Gaps = 15/289 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERIS 61
             +   + + ++ + + +       E   PH A + I+G I+   +     +I  +++  
Sbjct: 61  FFRIALLAVVVLGVWMAFTFNRIENEPLGPHTALVEIKGAIDSEGQGSAGVVIPALDKAF 120

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCAS 118
             + +  +I+ ++SPGGS      I   I ++     +KP+   V E+ AS GY I+ A+
Sbjct: 121 AANDSVGVILKINSPGGSPVQAGMINDEITRLRKQYPKKPIYVVVEEVCASGGYYIAAAA 180

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I   + SLVGS+GVL         +DKLGV  + + +   K+   PFS  +PK  +  
Sbjct: 181 DKIFVNKASLVGSVGVLMDGFGFTGLMDKLGVERRLLTAGENKSFLDPFSPQSPKQREYA 240

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           Q ++   +  F+ +V + R     +T     G +WTG++A ++GL D  G  + V +   
Sbjct: 241 QSMLQEIHQQFIEVVRQGRGARLKETPDTFSGLVWTGSKAVELGLADGFGTVDSVARD-- 298

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
               +     + D+   +N     LK   ++         +  + +  L
Sbjct: 299 ----EIKAEDVVDYTQTENLSERVLKKFGVA-FGAGFAKTVMSSSLPQL 342


>gi|167581132|ref|ZP_02374006.1| peptidase, U7 family protein [Burkholderia thailandensis TXDOH]
          Length = 305

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 123/274 (44%), Gaps = 17/274 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           +I  R+  L+++      F   S       +  H A + I G+I      +++++   ++
Sbjct: 20  RIFFRFAFLAVLGALAFAFLSVSGDGSKLASGRHTAVVTIDGEIAASTNANAEDINTALD 79

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115
               D     +++ ++SPGGS      ++  I++++ +   KP+   V +M AS GY I+
Sbjct: 80  SAFEDSGTVGVVLKINSPGGSPVQAGIVYDEIRRLRKKYPAKPLYVVVSDMCASGGYYIA 139

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         +DKLGV  +   S   K    PFS   PK  
Sbjct: 140 AAADKIYVDKASIVGSIGVLMDGFGFTGLMDKLGVERRLHTSGENKGFFDPFSPETPKMD 199

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q+++D  +  F++ V + R     ++  +  G  WTGA++ ++GL D  G  + V +
Sbjct: 200 AHAQEMLDEIHAQFIKAVKDGRGARLHESPDIFSGLFWTGAKSIELGLADDYGTTDSVAR 259

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
            +           + D+   ++      +    +
Sbjct: 260 DVLK------APDLVDYTVKESLTDRVARRFGAA 287


>gi|117924863|ref|YP_865480.1| signal peptide peptidase SppA, 36K type [Magnetococcus sp. MC-1]
 gi|117608619|gb|ABK44074.1| signal peptide peptidase SppA, 36K type [Magnetococcus sp. MC-1]
          Length = 350

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 63/280 (22%), Positives = 135/280 (48%), Gaps = 19/280 (6%)

Query: 6   KKIKTRYVMLSLVTLTVVY----FSWSSHVEDNSPHVARIAIRGQIE-----DSQELIER 56
           K +   +++L LV    +     F   S    + PHVA + + G I      D+ E+I+ 
Sbjct: 63  KNLFRLFIVLYLVATMALLNRGDFEEGSSASASEPHVAVVKMVGAIMPESDLDADEVIKN 122

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV---HEMAASAGYL 113
           ++   +D++  A+++ ++SPGGS      I+  I +++     I       ++ AS GY 
Sbjct: 123 LQEAFKDENTKAVVLRINSPGGSPVQAGMIYDEIVRLRAEHKEIKVYAALEDLCASGGYY 182

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           ++ A++ I A + +LVGSIGV+ +   ++   +++G+  +++ +   KA   P + V+  
Sbjct: 183 VAAAADEIYADKATLVGSIGVIMKGFGLEKLAEQVGLENRTLTAGNHKAFLDPLAPVDSA 242

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
                Q +++  +  F+ +V + R          L +G IWTG +A  +GL+D +G  + 
Sbjct: 243 EKAHAQGLLNQIHAQFIEVVKKGRGKRLKADDDKLFNGLIWTGEQAVTLGLVDGLGSVDW 302

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
           + +          I ++ +++  +++     K +S S+  
Sbjct: 303 LAREKIK------ITEVMEYHQNRHWSDRFFKEISSSTGT 336


>gi|255691166|ref|ZP_05414841.1| signal peptide peptidase SppA, 67K type [Bacteroides finegoldii DSM
           17565]
 gi|260623069|gb|EEX45940.1| signal peptide peptidase SppA, 67K type [Bacteroides finegoldii DSM
           17565]
          Length = 592

 Score =  142 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 74/262 (28%), Positives = 131/262 (50%), Gaps = 14/262 (5%)

Query: 15  LSLVTLT-VVYFSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERIS 61
           LSL+ L  ++    +   + +   +A     G+I D              ++I  + ++ 
Sbjct: 285 LSLLGLGDMINVRKNVPKDKSGNIIAVYYASGEITDYPGSATSEEGIVGSKVIRDLRKLK 344

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
            +D   A+++ ++SPGGSA+A E I+ A++++K +KPVI  + + AAS GY ISC ++ I
Sbjct: 345 DNDDVKAVVLRVNSPGGSAFASEQIWYAVKELKTKKPVIVSMGDYAASGGYYISCGADTI 404

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
           VA  T+L GSIG+    P VK   DK+G+S   VK++      +     +     ++Q +
Sbjct: 405 VAEPTTLTGSIGIFGMVPNVKELTDKIGLSYDVVKTNKYADFGNIMRPFSEGEKALLQMM 464

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           V   Y  F+   +E R+   +    +++GR+WTG  AK++GL+D +GG ++      A  
Sbjct: 465 VAEGYDTFITRCAEGRHTTKEAIEKIAEGRVWTGEAAKELGLVDELGGIDKALDIAVAKA 524

Query: 242 VDQSIRKIKDWNPPKNYWFCDL 263
                  I  +   K+     L
Sbjct: 525 RVGG-YTIVSYPEKKDVLSSLL 545



 Score =  107 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/264 (16%), Positives = 96/264 (36%), Gaps = 26/264 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49
             ++ +VTL  +  +  +        V  + + G +                        
Sbjct: 22  LFIIGMVTLFGIMAASDTETIVKKNSVMILDLNGTLVERTQEDPLGILSQLFNDDSNTYG 81

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
             +++  I++   ++    + +  +S G S  + + I  A+   K     +    +    
Sbjct: 82  LDDILSSIKKAKENEDIKGIYLQANSLGTSYASLQEIRNALLDFKESGKFVIAYADSYTQ 141

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y +S A++ ++     ++   G+     + K  L K+GV ++  K    K+   PF  
Sbjct: 142 GLYYLSSAADKVLLNPKGMIEWRGIASTPLFYKDLLQKIGVEMQIFKVGTYKSAVEPFIA 201

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225
           +E++P   + +   + S +      VS SRNIP D     +D     +   E+ + GL D
Sbjct: 202 TEMSPANREQVTTFISSIWSQVTEGVSASRNIPVDSLKAYADRMLMFYPAEESVRCGLAD 261

Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249
            +  + +V   L  L        +
Sbjct: 262 TLVYRNDVRDYLKRLVDIDEDDNL 285


>gi|222111810|ref|YP_002554074.1| peptidase s49 [Acidovorax ebreus TPSY]
 gi|221731254|gb|ACM34074.1| peptidase S49 [Acidovorax ebreus TPSY]
          Length = 347

 Score =  142 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 122/290 (42%), Gaps = 14/290 (4%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIER 59
               +  +V+L+   +        +    ++PH A + ++G+I       ++ ++  +  
Sbjct: 64  RNFWRLAWVLLAGAVIWAALSREMTATSKSTPHTAVVDVKGEIAAGAEASAEFVVAAMRS 123

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCA 117
              D  + A+++ ++SPGGS      I   I ++K +  KPV   V E  ASA Y I+ A
Sbjct: 124 AFEDSGSQAVVLLINSPGGSPVQAGIINDEIVRLKAKYNKPVYAVVEETCASAAYYIAAA 183

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           ++ I   + S+VGSIGVL         ++KLGV  + + +   K    PFS         
Sbjct: 184 ADGIFVDKASIVGSIGVLMDGFGFTGAMEKLGVERRLLTAGENKGFLDPFSPQTETQRAY 243

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
            Q ++D  +  F+ +V + R      T     G  WTG +A ++GL D +G  + V + +
Sbjct: 244 AQAMLDQIHQQFIGVVKQGRGDRLKVTPETFSGLFWTGQQAVEMGLADQLGNLDYVAREV 303

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
                      + D+    N      K    +  +   +  +   ++  L
Sbjct: 304 VK------AEDVIDYTRRDNVAERLAKKFGAAVGMG-AVKGLAALQLPQL 346


>gi|21674462|ref|NP_662527.1| protease IV [Chlorobium tepidum TLS]
 gi|21647650|gb|AAM72869.1| protease IV [Chlorobium tepidum TLS]
          Length = 597

 Score =  142 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 60/282 (21%), Positives = 119/282 (42%), Gaps = 14/282 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATAL 69
           +  +     +     +A I I G I                  + E ++    D    A+
Sbjct: 285 LGATGGMRPQGGGDRIAVINITGMIVSDGAGGMSEGDGTDVATVKEALQTAIDDLKVKAI 344

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           ++ + SPGG A A   +   + + K +KP++  +  +AAS GY+++ A + I A   ++ 
Sbjct: 345 VLRIDSPGGDALAASTMLELLNEAKAKKPIVASMSGLAASGGYMVALAGDKIFAEPLTIT 404

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV    P +   L+K G+  + +         +PF   +  + +   ++  + Y  F
Sbjct: 405 GSIGVFSLKPDLSSLLEKTGIRREVLIRGRFADAETPFRAFDDASFRKFVELTGTVYEDF 464

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI-RK 248
           +  V++ R++   +   ++ GR+W+G  A +VGLID +GG  +  Q    L   +   + 
Sbjct: 465 IAKVAKGRHMTPAQVDAVAGGRVWSGKRALEVGLIDQIGGLGDAVQEAKKLAGVKKEVKP 524

Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
              + P +  W   L     S ++      M +  +  L  +
Sbjct: 525 ALLYLPAQKTWLEYLLGSDTSDMVSALTAAMVRESLGQLQPL 566



 Score = 75.0 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 85/205 (41%), Gaps = 3/205 (1%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
             +EL+  ++R   D    ++++ +   G S    + +  +I  ++     +T       
Sbjct: 75  SFEELLTILDRAKTDRRVDSVLLRIDGLGASPAKIQELRSSIAALRKSGKKVTAFLVTPE 134

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSP 166
              Y ++ A + I+  + S +   G+  +  +V   L KLGVS ++ +    K+  E   
Sbjct: 135 DKDYQLAVACDSIIVQKGSWMTLDGLKAELFFVADPLKKLGVSFQAAQWKKYKSAVETFT 194

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGAEAKKVGLID 225
            +  +P+ ++    ++D ++  ++  VS  R I  D    + D   + T  +A  + LID
Sbjct: 195 RNSASPENLEETNALLDDAWSDYLDSVSRQRRIGKDAFRKVVDSLAVLTPEKALGLHLID 254

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIK 250
            V  + E+ Q         +   + 
Sbjct: 255 RVATERELEQEYARRLNKPAAELLV 279


>gi|289667892|ref|ZP_06488967.1| protease IV [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 583

 Score =  142 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 121/267 (45%), Gaps = 11/267 (4%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVS 72
           +          D+ P VA +   G+I            +     + +   D+   A+++ 
Sbjct: 270 LSQLQAQGSPMDSRPQVAVVVATGEISGGEQPAGRIGGESTAALLRQARDDEKVKAVVLR 329

Query: 73  LSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
           + SPGG  +A E I R +  + +  KPV+  + ++AAS GY IS  ++ I A  +++ GS
Sbjct: 330 VDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGS 389

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IG+    P +   LDK+GV    V ++           ++P A Q++Q V++  Y  F  
Sbjct: 390 IGIFGMVPNLTRALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTG 449

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIK 250
            V+++R+   D    ++ GR+W+GA+AK+ GL+D  GG +E            +   +++
Sbjct: 450 KVAQARHQSVDAIDKVARGRVWSGAQAKERGLVDAFGGMQEAVADAADRAKLSRGKFRVR 509

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIP 277
               P   +   +   + S +    + 
Sbjct: 510 YVEKPATPFSQLMSGFAGSRMGAWMLS 536



 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 81/210 (38%), Gaps = 12/210 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQKVKNRKPVITEVHEMAAS 109
           ++L+  IE   +D     ++++L     S +A +  +  A+QK++     I    E  + 
Sbjct: 49  RDLVRVIEAAGKDRKIERVLLNLDKFQPSGFASQREVAAALQKLRASGKQIVAFSESMSQ 108

Query: 110 AGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167
             YL++  +N +       V   G+  ++  + +   DKLGV +   +    K+   P+ 
Sbjct: 109 GQYLLAAQANEVYLDPMGSVMLEGLGRYRQYFREGLQDKLGVDVHLFRVGEYKSAAEPYI 168

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEA 218
               +  A +     ++  +  ++  +  +R +   +           ++         A
Sbjct: 169 LDAASADAKEADLFWMNDVWQRYLADIGTARKLSPAQLTAGIDTLPEGVAAAGGDLAKFA 228

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            +  L+D +  +EEV   L   GV  S   
Sbjct: 229 LQQKLVDGLKTREEVDALLVKRGVADSDAD 258


>gi|58038620|ref|YP_190584.1| protease IV [Gluconobacter oxydans 621H]
 gi|58001034|gb|AAW59928.1| Protease IV [Gluconobacter oxydans 621H]
          Length = 278

 Score =  142 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 74/269 (27%), Positives = 134/269 (49%), Gaps = 5/269 (1%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS-QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           S    + PH+ R+AI G I++   + +  +++       T L++ + SPGG    GE + 
Sbjct: 9   SANSIHRPHIVRLAISGIIKNDVSQTVRALKQAREASDVTGLLLVVDSPGGGVTGGERLH 68

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            A+++    KPV   + ++ ASA Y++S  +  IVA  ++L GSIGVLFQ P V   L +
Sbjct: 69  EAVKRFAAVKPVAVSMGDVGASAAYMLSVPAQHIVALPSTLTGSIGVLFQRPDVSVGLGR 128

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
           LG+ + ++ S  MK +  P S + P+  QM+Q +V+  +  FV +V+E R++  +K   L
Sbjct: 129 LGIGMDAITSGAMKDQTDPTSALTPEGRQMLQGLVNDLFGQFVSMVAEGRHLSEEKVRSL 188

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI-RKIKDWNPPKNYWFCDLKNL 266
           +DGR +TG +A  +GL+D +G ++     L       +    +    P  + ++      
Sbjct: 189 ADGRAYTGRQAIALGLVDELGDEDAARLWLRKQLKIGNASYPVVPLIPEHSRYWYQWPGK 248

Query: 267 SI---SSLLEDTIPLMKQTKVQGLWAVWN 292
                  L      ++ +  + G  A+  
Sbjct: 249 KALLKGLLGGTFSSVIDREGLDGAVAILQ 277


>gi|47093447|ref|ZP_00231211.1| peptidase, U7 family [Listeria monocytogenes str. 4b H7858]
 gi|47018175|gb|EAL08944.1| peptidase, U7 family [Listeria monocytogenes str. 4b H7858]
 gi|328465083|gb|EGF36357.1| hypothetical protein LM1816_12752 [Listeria monocytogenes 1816]
          Length = 337

 Score =  142 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 71/280 (25%), Positives = 134/280 (47%), Gaps = 19/280 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76
            E  +  +A +++ G I+D+ +               ++++E++  DD+   +++ ++SP
Sbjct: 56  EEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLEQVRNDDNIQGVLLYVNSP 115

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG       I   I +++  +  P    +  MAAS GY IS  ++ I A++ +L GS+GV
Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           + Q       + KLGVS  ++KS   K   S    +     ++MQ ++D SY+ FV++V+
Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           + R +  ++   ++DGRI+ G +AK+ GLID  G QE+  ++L           I+   P
Sbjct: 236 QGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALEALKKEQGLAGATVIQYDAP 295

Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291
                   +    IS   + +   I L    K   +  ++
Sbjct: 296 GDFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYLY 335


>gi|332876682|ref|ZP_08444441.1| signal peptide peptidase SppA [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332685387|gb|EGJ58225.1| signal peptide peptidase SppA [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 587

 Score =  142 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 77/279 (27%), Positives = 126/279 (45%), Gaps = 14/279 (5%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIED-----------SQELIERIERISRDDSATALIVS 72
             + +         +A     G I D           ++ +   +  +  D+S  A+++ 
Sbjct: 290 LAAATEATPKKGDKIAVYYAYGDIVDRKTEWSENVIDAETVCRDLRTLREDESVKAVVLR 349

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           ++S GGSAYA E I+  ++ ++  KPV+  +  MAAS GY ISCA+N IVA  T+L GSI
Sbjct: 350 VNSGGGSAYASEQIWHEVKLLREAKPVVVSMGGMAASGGYYISCAANYIVAEPTTLTGSI 409

Query: 133 GVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           G+    P     L DKLG+    VK++      +P    NP   QMMQ  +   Y  F  
Sbjct: 410 GIFGLIPDASQLLSDKLGLHFDVVKTNAHADFGTPARPFNPSEAQMMQGYIQRGYKLFTE 469

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
            V++ RN+   +   L++GR+WTG +A + GL D  G  +   +   +L   +      +
Sbjct: 470 RVADGRNMKTGQVKKLAEGRVWTGRQAVENGLADTNGNLQTAIKKAASLAKIKDYHT--E 527

Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
           + P  + W+  L +      L   +     T    L  +
Sbjct: 528 YAPTPSPWYEGLFDQQKKDYLNTALQETLGTYYAPLMNL 566



 Score = 92.0 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 93/259 (35%), Gaps = 24/259 (9%)

Query: 11  RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------------Q 51
            + +L ++++  +    S+        V R+ + G++++                    +
Sbjct: 21  AFFILGILSIVGMMTVESAAPSIKPQSVLRLTLNGELQEDAPNDPLGDLFGSTYPTLSLR 80

Query: 52  ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           E+   I+    + +   + +   +  G +      I  ++   K     I    +     
Sbjct: 81  EIQTAIQGAKENPNIDGIYIEAQTLLGATPAMIRDIRESLADFKKSGKYIIAYGDNYTQG 140

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168
            Y I   ++ I+      V   G+  Q  + K  L+K+G+ ++  K    K+   PF  +
Sbjct: 141 AYYICSIADSIILNPQGQVNWCGMASQPIFYKDLLEKIGIKMQVFKVGSYKSAVEPFTAT 200

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLIDV 226
           +++    + +   ++  +   +  VS SR+I  D     +D         E  + G++D 
Sbjct: 201 QMSDANREQVTSYLNDIWQTMLTDVSRSRSIKKDLLNEYADSMLTFRPAEELVRNGMVDS 260

Query: 227 VGGQEEVWQSLYALGVDQS 245
           +   + V + L A      
Sbjct: 261 LCYIDGVSRMLRAKTGKDK 279


>gi|186475587|ref|YP_001857057.1| peptidase S49 [Burkholderia phymatum STM815]
 gi|184192046|gb|ACC70011.1| peptidase S49 [Burkholderia phymatum STM815]
          Length = 336

 Score =  142 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 115/289 (39%), Gaps = 16/289 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIER 59
           +I  R+V L ++ L            V  +  H A + + G+I        +++   +  
Sbjct: 52  RIFFRFVFLGVLVLIAWAVLDFSGEKVATSGRHTALVTLDGEIASDTNANAEDIDMALAN 111

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISC 116
              D     +++  +SPGGS      I+R I++++ + P I     V +M AS GY  + 
Sbjct: 112 AFDDAGTAGVVLRCNSPGGSPVQAGIIYREIRRLRGKYPAIPLYVVVGDMCASGGYYAAA 171

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
           A++ I   + S+VGSIGVL         +DKLG+  +   S   K    PFS   PK   
Sbjct: 172 AADKIYVDKASIVGSIGVLMDGFGFTGLMDKLGIQRRMRTSGENKGFYDPFSPDTPKMDS 231

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
             Q ++D  +  F+  V + R         +  G  WTG ++ ++GL D  G    V + 
Sbjct: 232 HAQVMLDEIHAQFIDAVKQGRGKRLQDNPDIFSGLFWTGEKSVELGLADGFGDTNYVARE 291

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           +           + D+   ++      +    +        +    K+ 
Sbjct: 292 IIK------APDVVDYTVKESITDRVARKFGAAVGGGAVRAMATIGKLN 334


>gi|283955437|ref|ZP_06372935.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793064|gb|EFC31835.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 298

 Score =  142 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 134/279 (48%), Gaps = 2/279 (0%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           + + +K I T +    L+ + +     S +   N  ++ RI ++G+I DS  ++E+I   
Sbjct: 11  LGYGIKFINTYFKTFVLLLIVIWILMPSVNSSSNLANLERIDLKGEIFDSSAVLEKIINA 70

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
             D+S   ++  + SPGG+      +  AI+ +KN+KPV+       AS  YL    +N 
Sbjct: 71  KNDNSIKGVLFVIDSPGGAFAPSMELALAIKDLKNKKPVLVYASGTMASGSYLAGVGANK 130

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           I+A   S +GSIGV+ Q   +    +KLG+  +++++   K+  +     +      +Q 
Sbjct: 131 ILANPASFIGSIGVIMQGADLSGLANKLGIKEQTIQAGEFKSAGTFARAWSEDERNFLQG 190

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           ++D SY  F   V++ R +  +K    ++ R++  A+AK++GLID +   E   + L  L
Sbjct: 191 LIDQSYDLFTGFVAKERTLDLNKKNQWANARVFLAAKAKELGLIDGLSNYENAKKELEKL 250

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
               +   +       + +   L+  + S + +  I ++
Sbjct: 251 ANVSN--PVWKEEDKFDKFLNRLEGQASSLISKSLIEIV 287


>gi|296121657|ref|YP_003629435.1| signal peptide peptidase SppA, 36K type [Planctomyces limnophilus
           DSM 3776]
 gi|296013997|gb|ADG67236.1| signal peptide peptidase SppA, 36K type [Planctomyces limnophilus
           DSM 3776]
          Length = 649

 Score =  142 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 128/276 (46%), Gaps = 9/276 (3%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79
           + ++Y S       +        + G++  S+  I+ + ++  DD+  A+++ + SPGGS
Sbjct: 354 VGILYASGMISTGSSQNS----PLSGEVLGSETFIKAVRQLRDDDTVKAVVLRIDSPGGS 409

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           A A + ++  ++ +K +KP++  + ++A S GY I+  +  I AA  ++ GSIGV+    
Sbjct: 410 ALASDLMWHELELLKAKKPLVASMSDVAGSGGYYIAMGTQKIYAAPGTVTGSIGVVGGKV 469

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            ++   +KLG+++  ++        S  +       +  + +++  Y  F    +  R +
Sbjct: 470 ALEKLYNKLGINVVVLERGKNSGVLSTTTGFTESQREATRLLMNEIYEQFTSKAAAGRKM 529

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK--DWNPPKN 257
              +   L+ GRI++G  A ++GL+D +G  E+  +   AL   ++  K++  +   P +
Sbjct: 530 EVAQLEKLARGRIYSGNRALEIGLVDEIGTLEDAIKGAIALAKIENPAKLERLELPKPGS 589

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
                L  +   S +E  +    +  +        P
Sbjct: 590 PLESLLGPMGAESRMEARLEQRLKDLIPTAL---QP 622



 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 108/263 (41%), Gaps = 18/263 (6%)

Query: 37  HVARIAIRGQIEDSQ--------------ELIERIERISRDDSATALIVSLSSPGGSAYA 82
            +A + I G + +                 LI R+++ + D     +++           
Sbjct: 86  KIAHLKISGALTEGAPLEGLFGETSETLFTLIARLDKAAADKEIQTVVLEFGDLALGRGK 145

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
              +  AI +++     +    + A +  YL++ A + IV  E +++   GV  +  + K
Sbjct: 146 IYELRSAIARIRAAGKDVWAYLDSADTTAYLLASACDKIVMPEPAMLMIPGVRAEVWFYK 205

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
             L K+ V  + V+    K+   P+   +++P+  + M +++D  Y   V  ++ESR IP
Sbjct: 206 EMLSKIDVEPEVVRIGEFKSAGEPYTRKDMSPEFKKEMDELLDDVYSQIVSTIAESRKIP 265

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
            DK   L D  ++T  +AK  GL+D V  +  ++  +       S +  +++   K    
Sbjct: 266 ADKVRELIDTAVFTSEKAKSAGLLDEVQYESGLYDVIKKSHNVTSAKLTRNYGRKKT--D 323

Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283
            DL  L+    L + +       
Sbjct: 324 ADLSGLNGIITLMNALSGQTPAS 346


>gi|258626525|ref|ZP_05721365.1| Protease IV [Vibrio mimicus VM603]
 gi|258581236|gb|EEW06145.1| Protease IV [Vibrio mimicus VM603]
          Length = 642

 Score =  142 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 127/287 (44%), Gaps = 14/287 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           ++      S    + + +  +A +   G I D            +   +     D +  A
Sbjct: 333 ISYYEYKASVKPTLLNEANDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 392

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   I+ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 393 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 452

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +  L+ LG+    V ++P  +     + +   A   +Q  ++  Y 
Sbjct: 453 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGVTTGLTQGAKDAIQLGIEHGYQ 511

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F+ LV+E R +       L+ GR+WT  +A+ +GL+D +G  ++       L      +
Sbjct: 512 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 571

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           +  +++   P   +  DL      SL  D +  +    +Q L   W 
Sbjct: 572 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSALLPKSLQPLATEWQ 617



 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/324 (14%), Positives = 108/324 (33%), Gaps = 39/324 (12%)

Query: 1   MEFVLKKIKTRYVMLSL-VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + F+   +     +LS+ +   +   + +     N      + + G I +          
Sbjct: 45  ITFIRLALTNLIFLLSIGIIYFIYVHADAPMPSVNKASALILNLSGPIVEQSTHINPMDS 104

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            ++++ +     D++ T L+++    P  +      I +AI + 
Sbjct: 105 FAGSVFGEELPRENVLFDIVDTLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 164

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K+    +  V +    + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 165 KSSGKPVYAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 224

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203
             +    K+   PF   +++  A +     +   +  +V  V+ +R I          + 
Sbjct: 225 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIAIKTLTPTMDEF 284

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDWNPPKNYWFC 261
              L +      A +K+VGL+D +  +++V Q+L        +       +   K     
Sbjct: 285 VAQLKEVGGDLAALSKQVGLVDELATRQQVRQTLAETFGSDGKDSYNAISYYEYKASVKP 344

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQ 285
            L N +    +      +      
Sbjct: 345 TLLNEANDIAVVVASGAIMDGSQP 368


>gi|54297662|ref|YP_124031.1| hypothetical protein lpp1713 [Legionella pneumophila str. Paris]
 gi|53751447|emb|CAH12865.1| hypothetical protein lpp1713 [Legionella pneumophila str. Paris]
          Length = 318

 Score =  142 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 129/291 (44%), Gaps = 23/291 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWS-------SHVEDNSPHVARIAIRGQIEDS-----QEL 53
           +K + ++++ +++ + +VY S+        +    +  H+  I I G+I DS        
Sbjct: 30  RKRRWKWIIRTIILVVLVYSSYKIVSVAKTTEASKDKEHIGLIDINGEIADSSSASADNF 89

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASA 110
            + IE+  R     ALIV ++SPGGS    E I+  +   + +K          +M ASA
Sbjct: 90  TKGIEKAYRSKGLKALIVRINSPGGSPVQAEYIYNVLQYYKSLKPNIKTYAVCVDMCASA 149

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
            Y ++  ++ I A+  S+VGSIGVL+        L KLG+S +   S   KA   PFS  
Sbjct: 150 AYYVAVGADEIYASPASMVGSIGVLYNGFGFVDALQKLGISRRLQTSGVNKAFLDPFSPT 209

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                + +Q ++D  +  F+  V E R            G  WTG +A   GLID     
Sbjct: 210 TEFQKEKLQTMLDIVHKQFITRVKEGRGNRLHVDDETFSGLFWTGEQALANGLIDGYASS 269

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
            ++ + +        I  I D+   +N +    KNL  +  + D +P++  
Sbjct: 270 GQLAREVIK------ITDIVDYTYKQNVFDRLTKNLGTA--MADELPVILG 312


>gi|262171018|ref|ZP_06038696.1| protease IV [Vibrio mimicus MB-451]
 gi|261892094|gb|EEY38080.1| protease IV [Vibrio mimicus MB-451]
          Length = 616

 Score =  142 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 127/287 (44%), Gaps = 14/287 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           ++      S    + + +  +A +   G I D            +   +     D +  A
Sbjct: 307 ISYYEYKASVKPTLLNEANDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   I+ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +  L+ LG+    V ++P  +     + +   A   +Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGVTTGLTQGAKDAIQLGIEHGYQ 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F+ LV+E R +       L+ GR+WT  +A+ +GL+D +G  ++       L      +
Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           +  +++   P   +  DL      SL  D +  +    +Q L   W 
Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSALLPKSLQPLATEWQ 591



 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/324 (14%), Positives = 107/324 (33%), Gaps = 39/324 (12%)

Query: 1   MEFVLKKIKTRYVMLSL-VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + F+   +     +LS+ +   +   + +     N      + + G I +          
Sbjct: 19  ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPSVNKASALILNLSGPIVEQSTHINPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            ++++ +     D++ T L+++    P  +      I +AI + 
Sbjct: 79  FAGSVFGEELPRENVLFDIVDTLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K+    +  V +    + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 139 KSSGKPVYAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF   +++  A +     +   +  +V  V+ +R I         D  
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIDIKTLTPTMDEF 258

Query: 212 I--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDWNPPKNYWFC 261
           +           A +K+VGL+D +  +++V Q+L        +       +   K     
Sbjct: 259 VAQLKEVGGDLAALSKQVGLVDELATRQQVRQALAETFGSDGKDSYNAISYYEYKASVKP 318

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQ 285
            L N +    +      +      
Sbjct: 319 TLLNEANDIAVVVASGAIMDGSQP 342


>gi|262166101|ref|ZP_06033838.1| protease IV [Vibrio mimicus VM223]
 gi|262025817|gb|EEY44485.1| protease IV [Vibrio mimicus VM223]
          Length = 616

 Score =  142 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 127/287 (44%), Gaps = 14/287 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           ++      S    + + +  +A +   G I D            +   +     D +  A
Sbjct: 307 ISYYEYKASVKPTLLNEANDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   I+ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +  L+ LG+    V ++P  +     + +   A   +Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGVTTGLTQGAKDAIQLGIEHGYQ 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F+ LV+E R +       L+ GR+WT  +A+ +GL+D +G  ++       L      +
Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           +  +++   P   +  DL      SL  D +  +    +Q L   W 
Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSALLPKSLQPLATEWQ 591



 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 108/324 (33%), Gaps = 39/324 (12%)

Query: 1   MEFVLKKIKTRYVMLSL-VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + F+   +     +LS+ +   +   + +     N      + + G I +          
Sbjct: 19  ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPSVNKASALILNLSGPIVEQSTHINPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            ++++ +     D++ T L+++    P  +      I +AI + 
Sbjct: 79  FAGSVFGEELPRENVLFDIVDTLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K+    +  V +    + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 139 KSSGKPVYAVSDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF   +++  A +     +   +  +V  V+ +R I         D  
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIDIKTLTPTMDEF 258

Query: 212 I-----WTGAEA---KKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDWNPPKNYWFC 261
           +      +G  A   K+VGL+D +  +++V Q+L        +       +   K     
Sbjct: 259 VAQLKEVSGDLAALSKQVGLVDELATRQQVRQALAETFGSDGKDSYNAISYYEYKASVKP 318

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQ 285
            L N +    +      +      
Sbjct: 319 TLLNEANDIAVVVASGAIMDGSQP 342


>gi|320101772|ref|YP_004177363.1| signal peptide peptidase SppA, 36K type [Isosphaera pallida ATCC
           43644]
 gi|319749054|gb|ADV60814.1| signal peptide peptidase SppA, 36K type [Isosphaera pallida ATCC
           43644]
          Length = 379

 Score =  142 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 72/269 (26%), Positives = 130/269 (48%), Gaps = 10/269 (3%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           +  +      +A I I G I+DS    +  +I + S D S   +++ + SPGG+  A + 
Sbjct: 86  AGPIGPGKAKLAIIEITGSIDDSKADGISRQITQASLDSSVKGVLLRIDSPGGTVSASDR 145

Query: 86  IFRAIQ-KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           ++R +Q ++  RKPV+  +   AAS GY I+CA + + A   ++ GSIGV+ + P +   
Sbjct: 146 LWRDVQTRLVGRKPVVVSMGSRAASGGYYIACAGDALFAEPATITGSIGVILEIPQISGL 205

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           LDK+GV   ++ +   K   S +  +  +  Q     +D SY  F+R+V++ R +   + 
Sbjct: 206 LDKIGVEFATLTTGKFKDSGSIYRPITNEERQRFLKSIDQSYQRFLRVVAQGRKMELSQL 265

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             L+DG I++G EA + GL+D +G Q++  + L  L   +   ++  + PP +       
Sbjct: 266 KPLADGSIFSGEEALENGLVDFLGYQDDALRHLLKLTRLEEA-QVVRYVPPNSLATLLEL 324

Query: 265 NLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
               S L                 ++W P
Sbjct: 325 LELGSRL------PSPHPDPDESLSLWAP 347


>gi|217420954|ref|ZP_03452459.1| putative signal peptide peptidase SppA, 36K type [Burkholderia
           pseudomallei 576]
 gi|254184191|ref|ZP_04890781.1| peptidase, U7 family protein [Burkholderia pseudomallei 1655]
 gi|184214722|gb|EDU11765.1| peptidase, U7 family protein [Burkholderia pseudomallei 1655]
 gi|217396366|gb|EEC36383.1| putative signal peptide peptidase SppA, 36K type [Burkholderia
           pseudomallei 576]
          Length = 333

 Score =  142 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 126/289 (43%), Gaps = 17/289 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           +I  R+  L+++ +    F   S       +  H A + I G+I      +++++   ++
Sbjct: 48  RIFFRFAFLAVLGVLAFAFLSVSGDGSKLASGRHTAVVTIDGEIAASTNANAEDINTALD 107

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115
               D     +++ ++SPGGS      ++  I++++ +   KP+   V +M AS GY I+
Sbjct: 108 SAFEDSGTVGVVLKINSPGGSPVQAGIVYDEIRRLRKKYPAKPLYVVVSDMCASGGYYIA 167

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         + KLGV  +   S   K    PFS   PK  
Sbjct: 168 AAADKIYVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFFDPFSPETPKMD 227

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q+++D  +  F++ V + R     ++  +  G  WTGA++ ++GL D  G  + V +
Sbjct: 228 AHAQEMLDEIHAQFIKAVKDGRGARLHESPDIFSGLFWTGAKSIELGLADDYGTTDTVAR 287

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
            +           + D+   ++      +    +         +   ++
Sbjct: 288 DVLK------APDLVDYTVKESLTDRVARRFGAALGKAALKAAVAGGEL 330


>gi|16803625|ref|NP_465110.1| hypothetical protein lmo1585 [Listeria monocytogenes EGD-e]
 gi|224501475|ref|ZP_03669782.1| hypothetical protein LmonFR_02992 [Listeria monocytogenes FSL
           R2-561]
 gi|254831986|ref|ZP_05236641.1| hypothetical protein Lmon1_11555 [Listeria monocytogenes 10403S]
 gi|284801977|ref|YP_003413842.1| hypothetical protein LM5578_1732 [Listeria monocytogenes 08-5578]
 gi|284995119|ref|YP_003416887.1| hypothetical protein LM5923_1684 [Listeria monocytogenes 08-5923]
 gi|16411014|emb|CAC99663.1| lmo1585 [Listeria monocytogenes EGD-e]
 gi|284057539|gb|ADB68480.1| hypothetical protein LM5578_1732 [Listeria monocytogenes 08-5578]
 gi|284060586|gb|ADB71525.1| hypothetical protein LM5923_1684 [Listeria monocytogenes 08-5923]
          Length = 337

 Score =  142 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 71/280 (25%), Positives = 134/280 (47%), Gaps = 19/280 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76
            E  +  +A +++ G I+D+ +               ++++E++  DD+   +++ ++SP
Sbjct: 56  EEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLEQVRNDDNIQGVLLYVNSP 115

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG       I   I +++  +  P    +  MAAS GY IS  ++ I A++ +L GS+GV
Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           + Q       + KLGVS  ++KS   K   S    +     ++MQ ++D SY+ FV++V+
Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           + R +  ++   ++DGRI+ G +AK+ GLID  G QE+  ++L           I+   P
Sbjct: 236 QGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALEALKKEQGLAGATVIQYDAP 295

Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291
                   +    IS   + +   I L    K   +  ++
Sbjct: 296 GDFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYLY 335


>gi|254824356|ref|ZP_05229357.1| peptidase [Listeria monocytogenes FSL J1-194]
 gi|255520878|ref|ZP_05388115.1| hypothetical protein LmonocFSL_06586 [Listeria monocytogenes FSL
           J1-175]
 gi|293593590|gb|EFG01351.1| peptidase [Listeria monocytogenes FSL J1-194]
          Length = 337

 Score =  142 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 71/280 (25%), Positives = 134/280 (47%), Gaps = 19/280 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76
            E  +  +A +++ G I+D+ +               ++++E++  DD+   +++ ++SP
Sbjct: 56  EEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLEQVRNDDNIQGVLLYVNSP 115

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG       I   I +++  +  P    +  MAAS GY IS  ++ I A++ +L GS+GV
Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           + Q       + KLGVS  ++KS   K   S    +     ++MQ ++D SY+ FV++V+
Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           + R +  ++   ++DGRI+ G +AK+ GLID  G QE+  ++L           I+   P
Sbjct: 236 QGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALEALKKEQGLAGATVIQYDAP 295

Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291
                   +    IS   + +   I L    K   +  ++
Sbjct: 296 GDFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYLY 335


>gi|165937987|ref|ZP_02226547.1| peptidase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165914010|gb|EDR32627.1| peptidase [Yersinia pestis biovar Orientalis str. IP275]
 gi|327536450|gb|AEA95283.1| peptidase-like protein [Salmonella enterica subsp. enterica serovar
           Dublin]
          Length = 319

 Score =  142 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 68/284 (23%), Positives = 125/284 (44%), Gaps = 16/284 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSS----HVEDNSPHVARIAIRGQIE-----DSQELI 54
           +L+ ++    +L ++   ++  +         +  +PH A I IRG+I      D+  LI
Sbjct: 34  MLRVLRASGFVLLMIGFIILASNPGGMPWQSAKAGAPHTAYINIRGEIAAGTLADADHLI 93

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAG 111
             I+    + ++ A+++ ++SPGGS      I+  +   + +   K V   + ++ AS G
Sbjct: 94  PSIQAAFDNPNSQAIVLRINSPGGSPVQAGRIYDEVKAQRALHPEKKVYAIIDDIGASGG 153

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I A   SLVGSIGV+         +DKLG+  +++ S   KA   PFS + 
Sbjct: 154 YYIASAADEIYADRASLVGSIGVISSGFGFTGLMDKLGIERRAITSGEHKALLDPFSPLT 213

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
               +  + V+  ++  F+  V   R         +  G +W G +AK +GLID +G   
Sbjct: 214 SDMKKFWEGVLSKTHQQFIERVKAGRGDRLKDDPEVFSGLLWNGEQAKDIGLIDGLGSLN 273

Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
            V + +            +D              L  SS +++ 
Sbjct: 274 SVARDVIHQSNLVDYTPTEDIIRR----LTQRAKLEASSFVQEL 313


>gi|158521750|ref|YP_001529620.1| signal peptide peptidase SppA, 36K type [Desulfococcus oleovorans
           Hxd3]
 gi|158510576|gb|ABW67543.1| signal peptide peptidase SppA, 36K type [Desulfococcus oleovorans
           Hxd3]
          Length = 319

 Score =  142 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 70/285 (24%), Positives = 121/285 (42%), Gaps = 22/285 (7%)

Query: 31  VEDNSPHVARIAIRGQIED--------------SQELIERIERISRDDSATALIVSLSSP 76
                  +A +++ G I D                E + ++     D S  AL++ ++SP
Sbjct: 27  EGSGPQKIAMVSVNGAITDKPTRDFMSRNHPGMLDEFVAQLALAKEDPSIKALVLKVNSP 86

Query: 77  GGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG+  A + +++ +   K +  KPV+  + ++AAS GY IS  ++ I+A  T+L GS+GV
Sbjct: 87  GGTITASDIMYKELMDFKQQTGKPVVAALMDVAASGGYYISLPADHILAHPTTLTGSVGV 146

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +F  P V   +DKLG+ +K  KS   K   SPF +   +   +   ++D     F  LV 
Sbjct: 147 IFVTPRVSGLMDKLGLDMKIRKSGKHKDMGSPFRDTTAEEDALFDGIIDDMAGRFAGLVE 206

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN- 253
           + R         +   RI+T  +A   GL+D VG  E+       +        +  +  
Sbjct: 207 KHRADQKPDMEKIKTARIFTADDALSAGLVDQVGYLEDALAQAKKMAGLPDNAAVVTYRR 266

Query: 254 ---PPKNYWFCDLKNLSISSLLEDTIPLMKQTKV--QGLWAVWNP 293
              P    +   +      S     I L++       GL+ +W P
Sbjct: 267 TYYPNDTIYNTLVTQYGAHSGALVNIDLLESMPALKPGLYYLWWP 311


>gi|172038284|ref|YP_001804785.1| protease IV, 36K short form [Cyanothece sp. ATCC 51142]
 gi|171699738|gb|ACB52719.1| protease IV, 36K short form [Cyanothece sp. ATCC 51142]
          Length = 272

 Score =  142 bits (356), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 139/266 (52%), Gaps = 8/266 (3%)

Query: 34  NSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
            S  +ARI I G I     + ++E +  +       AL++ + SPGG+    + I+ A++
Sbjct: 9   PSKQIARIEITGAIASETRKYVLEALNTVKE-KKFPALLLRIDSPGGTVGDSQEIYEALK 67

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           +++++  ++     ++AS G  I   +  I+A   ++ GSIGV+ +   ++  LDK+GVS
Sbjct: 68  RLQDKVKIVASFGNISASGGVYIGMGAQHIMANPGTITGSIGVILRGNNLERLLDKIGVS 127

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
            K +KS P K   +   E+  +   ++Q+++D+SY  FV  V++ RN+  +K    +DGR
Sbjct: 128 FKVIKSGPYKDILAFDRELTEEEHHILQEMIDTSYQQFVTTVAQGRNLDVNKVKTFADGR 187

Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFCDLKNLSISS 270
           I+TG +A ++G++D +G +E+  +    L        +  D   PK+     L      S
Sbjct: 188 IFTGQQALELGVVDRLGTEEDARRWAAELAGLNPDKAQCYDIEEPKSLLNRVLSRNQSKS 247

Query: 271 LLEDTIPLMK---QTKVQGLWAVWNP 293
            L+ ++  ++   +T  Q LW ++ P
Sbjct: 248 KLKTSMDWLEFELKTNGQPLW-LYRP 272


>gi|329121217|ref|ZP_08249844.1| signal peptide peptidase [Dialister micraerophilus DSM 19965]
 gi|327470151|gb|EGF15614.1| signal peptide peptidase [Dialister micraerophilus DSM 19965]
          Length = 322

 Score =  142 bits (356), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 78/300 (26%), Positives = 140/300 (46%), Gaps = 26/300 (8%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHV-----EDNSPHVARIAIRGQI-------------- 47
           KI    +++  +    + F     V     ++N+ +VA + I G I              
Sbjct: 14  KITLAVIIVLFILAIAINFVGMKDVSSFANKNNNKYVAVVRIDGPIYGGDVNQNMLGGVS 73

Query: 48  -EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHE 105
              S++++  +   +RD +A A+++ ++SPGG+  A + I   I KV+N  KPVI  + +
Sbjct: 74  GSSSEDIMYELREATRDPNAKAVLLRINSPGGTTGATQEIAEEIDKVRNSGKPVIVSMGD 133

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
             ASAGY ++   + I A+  ++ GSIGV   Y  V   +DKLGV  + +KS   K   S
Sbjct: 134 TCASAGYWLASKGDYIFASPATITGSIGVYMDYTNVSELMDKLGVKNEKIKSGTHKDILS 193

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
            +  +  +   ++Q +VD  Y+ FV+ +++ R++   K   ++DGRI TG +A+  GL+D
Sbjct: 194 MYRPITDEEKTILQKMVDDIYNQFVQTIADGRHLEEAKVREIADGRILTGKQAQAYGLVD 253

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
            +G   +            S     D  P ++Y         +S+ + +T        V 
Sbjct: 254 AMGNYYDALTYAGNRVGINS-----DVIPTRSYSKGMTLRGLLSAEMNNTAQNFASRIVD 308


>gi|239947709|ref|ZP_04699462.1| signal peptide peptidase SppA [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921985|gb|EER22009.1| signal peptide peptidase SppA [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 304

 Score =  141 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 153/298 (51%), Gaps = 15/298 (5%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSW-----------SSHVEDNSPHVARIAIRGQIEDSQEL 53
            ++IK+R ++  L  + ++   +             H+  N  ++A + I   I + ++ 
Sbjct: 11  RRQIKSRLLIWKLAAIILIAIVFLLVGKDFAPKEVLHINSNEDYIASVLIDEIILEDEKR 70

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
            +++++I  D    ALIV+++SPGG+    E I+  ++K+  +KPV+  +  +AAS GYL
Sbjct: 71  DKKLKKIIDDSHIKALIVNVNSPGGTVVGSEKIYNILRKISEKKPVVIVMGTIAASGGYL 130

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           IS   + IV+   ++ GSIGV+ Q   V     KLG+   + KS  +KA P+P  ++   
Sbjct: 131 ISLGGDYIVSHNGTITGSIGVILQTAEVTELAQKLGIKFNNFKSGELKAVPNPTEKLTEA 190

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
               + + ++ +Y++F+ LVSE RN+P ++   L+DGR+++G +A K+ L+D +G ++  
Sbjct: 191 VRVAIMENIEDTYNFFLELVSERRNLPIEEVKKLADGRVYSGRQALKLKLVDAIGSEDTA 250

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
            + L  +        +KD+         D+      S+     P   +    G+ A++
Sbjct: 251 LKWLQEVKKINVNLLVKDYQLKPKPKLMDIILEDFDSIT----PSFFKNSFNGIKAIF 304


>gi|197106190|ref|YP_002131567.1| signal peptide peptidase SppA [Phenylobacterium zucineum HLK1]
 gi|196479610|gb|ACG79138.1| signal peptide peptidase SppA [Phenylobacterium zucineum HLK1]
          Length = 590

 Score =  141 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 70/277 (25%), Positives = 122/277 (44%), Gaps = 18/277 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQI----------------EDSQELIERIERISRDDSATALIV 71
           +      S  +A I   G I                  S +L + I+R +R  S  A+++
Sbjct: 286 TERRARGSDSIALIEAEGPILTGRDEGASPFVSNAAIYSDDLADAIQRATRAKSVKAIVL 345

Query: 72  SLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
            ++SPGGS  A E I  A++  K + KPV+  +   AAS GY I+  ++ IVA  T+L G
Sbjct: 346 RVNSPGGSDTASEQILDAVRAAKAKGKPVVVSMSSYAASGGYWIASEASAIVAQPTTLTG 405

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSS-PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           SIGV      +   L + GV ++      P     +                +D  Y  F
Sbjct: 406 SIGVFGGKFALGDALARFGVDVRQTDVGGPYTGAFNLAEPFTAPQRAAFSRWMDRIYANF 465

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           +  V+  RN+P ++   ++ GR+WTGA+A+++GL+D +GG  +  +   AL   +   +I
Sbjct: 466 LERVARGRNLPPERVAEIARGRVWTGAQARELGLVDELGGFYQAVERAKALAGLEGEVQI 525

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +   P ++      + + +S+    T+          
Sbjct: 526 RRMTPMESPLEALERAMGVSAASVRTLAAAAWVFGDP 562



 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 100/294 (34%), Gaps = 24/294 (8%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ----------------ELIE 55
             ++ +  + V     ++     S  V  + +R  + D                   ++E
Sbjct: 17  IFLVGVPLILVSLALGATTTPVPSRAVLELDLRNNLTDQAPQSPLAGFGRGSVAVMTIVE 76

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS-----A 110
            + R   D     L+V L   G      + I +A+++ +     +    +         +
Sbjct: 77  TLRRAETDSHVKGLLVRLPEGGMEPGMADEIRQALKRFRASGKPVIAHSQGLYPGGVVTS 136

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFS 168
            Y++  AS  +     + +   G+  +  ++K F DK GV+ +  +    K       +S
Sbjct: 137 TYMVGAASGELWMQPGASLQVTGLATEDLFLKRFFDKYGVTPQYEQRQEYKNAVNTFLYS 196

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
           +  P+  +     + S Y   +   +  R           +   +   +A ++ LID VG
Sbjct: 197 DYTPEHREATLSWMTSVYGAGLAAAAADRKTDAAALQRTLEAGPYVAEDALRLKLIDRVG 256

Query: 229 GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282
              E  Q+L A   D +   ++  +          +     +L+E   P++   
Sbjct: 257 QVREAEQALLAKAGD-NAEMVEFRDYAGGRTERRARGSDSIALIEAEGPILTGR 309


>gi|124386100|ref|YP_001028745.1| peptidase, U7 family protein [Burkholderia mallei NCTC 10229]
 gi|124294120|gb|ABN03389.1| peptidase, U7 family [Burkholderia mallei NCTC 10229]
          Length = 333

 Score =  141 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 125/289 (43%), Gaps = 17/289 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           +I  R+  L+++      F   S       +  H A + I G+I      +++++   ++
Sbjct: 48  RIFFRFAFLAVLGALAFAFLSVSGDGGKLASGRHTAVVTIDGEIAASTNANAEDINTALD 107

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115
               D     +++ ++SPGGS      ++  I++++ +   KP+   V +M AS GY I+
Sbjct: 108 SAFEDSGTVGVVLKINSPGGSPVQAGIVYDEIRRLRKKYPAKPLYVVVSDMCASGGYYIA 167

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         + KLGV  +   S   K    PFS   PK  
Sbjct: 168 AAADKIYVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFFDPFSPETPKMD 227

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q+++D  +  F++ V + R     ++  +  G  WTGA++ ++GL D  G  + V +
Sbjct: 228 AHAQEMLDEIHAQFIKAVKDGRGARLHESPDIFSGLFWTGAKSIELGLADDYGTTDTVAR 287

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
            +           + D+   ++      +    +         +   ++
Sbjct: 288 DVLK------APDLVDYTVKESLTDRVARRFGAALGKAALKAAVAGGEL 330


>gi|269217110|ref|ZP_06160964.1| signal peptide peptidase SppA [Slackia exigua ATCC 700122]
 gi|269129247|gb|EEZ60332.1| signal peptide peptidase SppA [Slackia exigua ATCC 700122]
          Length = 406

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 106/247 (42%), Gaps = 8/247 (3%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81
           +S +      VA I + G I         + L   ++ +  DD   A+++ ++S GG++ 
Sbjct: 138 ASSLSTYGDSVAVITMSGTIGYDGSACSPEGLRAALKSVEADDDIKAVVLRVNSGGGTST 197

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
           AGE + + I      KP++     +  SA Y IS  ++ I    ++ +G+IG + Q    
Sbjct: 198 AGEEMSQLIAGF--DKPIVVSSASINCSAAYEISSQADYIYVNHSTAIGAIGTIMQTYDA 255

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              LDKLG+ + S+ S+  K        +  +  +  Q++V      FV  V+  R +  
Sbjct: 256 SELLDKLGIKVNSIASAESKDSSYGTRPLTDEEREYYQNLVSQINAQFVSSVASGRGMSV 315

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
            +   L+ G  +TG +A   GL D +G  ++       LG  +    + D +P ++    
Sbjct: 316 AQVQELATGMEFTGDDAVANGLADEIGTYDDALAKAAELGGIKGDFDVVDADPSRSDLAS 375

Query: 262 DLKNLSI 268
            L     
Sbjct: 376 LLGISGS 382


>gi|289664822|ref|ZP_06486403.1| protease IV [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 633

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/267 (24%), Positives = 122/267 (45%), Gaps = 11/267 (4%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVS 72
           +          D+ P VA +   G+I            +     + +   D+   A+++ 
Sbjct: 320 LSQLQAQGSPMDSRPQVAVVVATGEISGGEQPAGRIGGESTAALLRQARDDEKVKAVVLR 379

Query: 73  LSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
           + SPGG  +A E I R +  + +  KPV+  + ++AAS GY IS  ++ I A  +++ GS
Sbjct: 380 VDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGS 439

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IG+    P +   LDK+GV    V ++           ++P A Q++Q V++  Y  F  
Sbjct: 440 IGIFGMVPNLTRALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTG 499

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR-KIK 250
            V+++R+   D    ++ GR+W+GA+AK+ GL+D  GG +E            S + +++
Sbjct: 500 KVAQARHQSVDAIDKVARGRVWSGAQAKERGLVDAFGGMQEAVADAADRAKLSSGKFRVR 559

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIP 277
               P   +   +   + S +    + 
Sbjct: 560 YVEKPATPFSQLMSGFAGSRMGAWMLS 586



 Score = 68.1 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 97/288 (33%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRGQIEDS------ 50
           M F  + I        L  L +++    +  +   P        I   G + +       
Sbjct: 21  MNFTRRLIFNLVFFGFLFLLLLLFVVALARGDGTKPLAERTTLVINPEGTLVEQFSADPV 80

Query: 51  ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQ 91
                             ++L+  IE   +D     ++++L     S +A +  +  A+Q
Sbjct: 81  SRSLAKAVGDKSAEEVQLRDLVRVIEAAGKDRKIERVLLNLDKFQPSGFASQREVAAALQ 140

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGV 150
           K++     I    E  +   YL++  +N +       V   G+  ++  + +   DKLGV
Sbjct: 141 KLRASGKQIVAFSESMSQGQYLLAAQANELYLDPMGSVMLEGLGRYRQYFREGLQDKLGV 200

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
            +   +    K+   P+     +  A +     ++  +  ++  +  +R +   +     
Sbjct: 201 DVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWQRYLADIGTARKLSPAQLTAGI 260

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 ++         A +  L+D +  +EEV   L   GV  S   
Sbjct: 261 DTLPEGVAAAGGDLAKFALQQKLVDGLKTREEVDALLVKRGVADSDAD 308


>gi|242347949|ref|YP_002995510.1| peptidase family S49 family protein [Aeromonas hydrophila]
 gi|224831768|gb|ACN66899.1| peptidase family S49 family protein [Aeromonas hydrophila]
          Length = 319

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 12/261 (4%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSS----HVEDNSPHVARIAIRGQIE-----DSQELI 54
           +L+ ++    +L ++   ++  +         +  +PH A I IRG+I      D+  LI
Sbjct: 34  LLRVLRASGFVLLMIGFIILASNPGGMPWQSTKAGAPHTAYINIRGEIAAGTLADADHLI 93

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFR---AIQKVKNRKPVITEVHEMAASAG 111
             I+    + ++ A+++ ++SPGGS      I+    A++ +   K V   + ++ AS G
Sbjct: 94  PSIQAAFDNPNSQAVVLRINSPGGSPVQAGRIYEEVKALRALHPEKKVYAIIDDIGASGG 153

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I A   SLVGSIGV+         +DKLG+  +++ S   KA   PFS + 
Sbjct: 154 YYIASAADEIYADRASLVGSIGVISSGFGFTGLMDKLGIERRAITSGEHKALLDPFSPLT 213

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
                  + V+  ++  F+  V   R         +  G +W G +AK +GLID +G   
Sbjct: 214 SDMKTFWEGVLSKTHQQFIERVKAGRGDRLKDDQEVFSGLLWNGEQAKDIGLIDGLGSLN 273

Query: 232 EVWQSLYALGVDQSIRKIKDW 252
            V + +            +D 
Sbjct: 274 SVARDVIHQSNLVDYTPTEDI 294


>gi|220910108|ref|YP_002485419.1| signal peptide peptidase SppA, 36K type [Cyanothece sp. PCC 7425]
 gi|219866719|gb|ACL47058.1| signal peptide peptidase SppA, 36K type [Cyanothece sp. PCC 7425]
          Length = 270

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 127/265 (47%), Gaps = 5/265 (1%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQELIERIERIS---RDDSATALIVSLSSPGGSAYAGEAI 86
             +     +ARI + G I  +    +R+ +      +    AL++ + SPGG+    + I
Sbjct: 4   PFKPARKQIARIEVTGVIAAA--TRKRLLQAFKTIEEKGFPALLLRIDSPGGTVGDSQEI 61

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
           + A+++++ +  ++     ++AS G  I   +  I+A   ++ GSIGV+ +   ++  LD
Sbjct: 62  YTALKRLREKVKIVASFGNISASGGVYIGMGAEHIMANPGTITGSIGVILRGNNLERLLD 121

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           K+GVS K++KS P K   +   E+      ++Q+++D+SY  FV+ V+E R +  +    
Sbjct: 122 KIGVSFKTIKSGPYKDILAFDRELTEPEKHILQELIDTSYGQFVQTVAEGRKLAEETVRS 181

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
            +DGR++TG +A  +GL+D +G +EE  +    L      +        +  ++      
Sbjct: 182 FADGRVFTGQQALALGLVDRLGTEEEARRWAAELVGLDPEKTRCFTIEERKPFWNKFVPG 241

Query: 267 SISSLLEDTIPLMKQTKVQGLWAVW 291
           +  + L   +  ++         +W
Sbjct: 242 NSQTTLGAGLSWLEFELSTSGLPLW 266


>gi|258621243|ref|ZP_05716277.1| Protease IV [Vibrio mimicus VM573]
 gi|258586631|gb|EEW11346.1| Protease IV [Vibrio mimicus VM573]
          Length = 616

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 128/287 (44%), Gaps = 14/287 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           ++      S    + + +  +A +   G I D            +   +     D +  A
Sbjct: 307 ISYYEYKASVKPTLLNEANDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   I+ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +  L+ LG+    V ++P  +     + +   A   +Q  +++ Y 
Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGVTTGLTQGAKDAIQLGIENGYQ 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F+ LV+E R +       L+ GR+WT  +A+ +GL+D +G  ++       L      +
Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           +  +++   P   +  DL      SL  D +  +    +Q L   W 
Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSALLPKSLQPLATEWQ 591



 Score = 93.1 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/324 (14%), Positives = 108/324 (33%), Gaps = 39/324 (12%)

Query: 1   MEFVLKKIKTRYVMLSL-VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + F+   +     +LS+ +   +   + +     N      + + G I +          
Sbjct: 19  ITFIRLALTNLIFLLSIGIIYFIYVHADAPMPSVNKASALILNLSGPIVEQSTHINPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            ++++ +     D++ T L+++    P  +      I +AI + 
Sbjct: 79  FAGSVFGEELPRENVLFDIVDTLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K+    +  V +    + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 139 KSSGKPVYAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203
             +    K+   PF   +++  A +     +   +  +V  V+ +R I          + 
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIAIKTLTPTMDEF 258

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDWNPPKNYWFC 261
              L +      A +K+VGL+D +  +++V Q+L        +       +   K     
Sbjct: 259 VAQLKEVGGDLAALSKQVGLVDELATRQQVRQTLAETFGSDGKDSYNAISYYEYKASVKP 318

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQ 285
            L N +    +      +      
Sbjct: 319 TLLNEANDIAVVVASGAIMDGSQP 342


>gi|312795521|ref|YP_004028443.1| Signal peptide peptidase sppA [Burkholderia rhizoxinica HKI 454]
 gi|312167296|emb|CBW74299.1| Signal peptide peptidase sppA (EC 3.4.21.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 338

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 117/277 (42%), Gaps = 14/277 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIERIS 61
             +  ++ + +     V+            H A +++ G+I       +Q +   ++   
Sbjct: 56  FFRGAFLAVWIALTWSVFSLLGERSVSAGRHTALVSLNGEIAANSNASAQNIDAALQNAF 115

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCAS 118
            D +   +I+ ++SPGGS      I   I++++++   KP+   V ++ AS GY ++ A+
Sbjct: 116 DDSNTAGVILRINSPGGSPVQAGIINTEIRRLRDKYPSKPLYVVVEDICASGGYYVAAAA 175

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I   + S+VGSIGV      V   +DKLG+  +   S   K    PFS  + K  Q  
Sbjct: 176 DKIYVDKASIVGSIGVRMDGFGVTGLMDKLGIERRMHTSGENKGFYDPFSPESDKMKQHA 235

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           Q ++D  +  F+  V + R     +T  +  G  WTG ++ ++GL D  G  + V + + 
Sbjct: 236 QHMLDDIHAQFIAAVRQGRGKRLKETPDMFSGLFWTGDKSVELGLADGFGSTDYVAREVI 295

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
                     I D+   ++      +    +      
Sbjct: 296 K------APDIVDYTVKESITDRVARKFGAAVGGAAL 326


>gi|296168584|ref|ZP_06850388.1| protease IV [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896647|gb|EFG76286.1| protease IV [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 594

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/280 (24%), Positives = 125/280 (44%), Gaps = 21/280 (7%)

Query: 30  HVEDNSPHVARIAIRGQIEDS----------------QELIERIERISRDDSATALIVSL 73
                 P +A I + G I D                   +   +   + DDS +A+++ +
Sbjct: 295 PGRKPKPTLAVITLDGMIVDGRGGPQFLPFGAATAGGDTIGAALREAAADDSVSAIVLRV 354

Query: 74  SSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           +SPGG+  A E+I+R + + + R KPV+  +  +AAS GY +S  ++ IVA   ++ GSI
Sbjct: 355 NSPGGTITASESIWREVTRARKRGKPVVASMGAVAASGGYYVSMGADAIVANPATVTGSI 414

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GV+     ++  L++LGV   +V+++      S  +   P+     +   D  Y  FV+ 
Sbjct: 415 GVITGKLVIRDLLERLGVGSDTVRTNANADAWSIDAPFTPEQRAHREAEADLFYADFVQR 474

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           V+E+RN+  +    ++ GRIWTGA+A   GL+D +GG     +    L        ++  
Sbjct: 475 VAEARNLTTEAAESVAQGRIWTGADALDRGLVDELGGFRAAVRRAKVLAGLDEDSDVRIV 534

Query: 253 NPPKNYWFCD----LKNLSISSLLEDTIPLMKQTKVQGLW 288
             P +           +   ++ L D +  +    V    
Sbjct: 535 AYPSSSLLDMVRPRASSQPAAASLPDALGALLGRTVTSFL 574



 Score = 88.1 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 70/196 (35%), Gaps = 2/196 (1%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           ++ +  + R + D     LI  +        A + +  AI      KP +        + 
Sbjct: 64  RDAVAAVHRAAEDPRVAGLIARVQLAASPPAAVQELREAIAAFSAAKPSLAWAETYPGTL 123

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE--PSPFS 168
            Y ++ A   +    +  VG IG      +++   DK G+  + V     K+        
Sbjct: 124 SYYLASAFREVWMQPSGSVGLIGFASNETFLRDAFDKAGIEPQFVARGQYKSWANRFTEH 183

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
                  + +  +++S      R +++SR +       L+D       +A   GL+D +G
Sbjct: 184 GFTTAHREAVTRMLESLQEQTWRAIAQSRKLDPGALDTLADRAPLLRDDAVAAGLLDRIG 243

Query: 229 GQEEVWQSLYALGVDQ 244
            ++E +  +  +    
Sbjct: 244 FRDEAYARIAEMAGAP 259


>gi|329961656|ref|ZP_08299715.1| signal peptide peptidase SppA [Bacteroides fluxus YIT 12057]
 gi|328531648|gb|EGF58482.1| signal peptide peptidase SppA [Bacteroides fluxus YIT 12057]
          Length = 589

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 130/267 (48%), Gaps = 13/267 (4%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQIEDSQE------------LIERIERISRDDSATAL 69
           +V    ++  + +   +A     G+I+                +I+ + ++  D++  A+
Sbjct: 290 MVNVKKNAPKDKSGNVIAVYYAYGEIDGGTSSSTGEEGINSVKVIKDLRKLKEDENVKAV 349

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           ++ ++SPGGSAY  E I+ A+ ++K  KPVI  + + AAS GY ISC ++ IVA  T+L 
Sbjct: 350 VLRVNSPGGSAYGSEQIWYAVSELKKEKPVIVSMGDYAASGGYYISCNADTIVAEPTTLT 409

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIG+   +P  K   DK+G++   VK++           +N     +MQ  V+  Y  F
Sbjct: 410 GSIGIFGMFPNAKGLTDKIGLNFDVVKTNQYADFGMLTRPMNDGEKGLMQMYVNQGYDLF 469

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           +   S+ R I  ++   ++ GR+WTG+ AK++GL+D +GG ++  +   A         +
Sbjct: 470 LTRCSDGRGIGKEELDKIAQGRVWTGSTAKELGLVDELGGLDKAVEIAIAKSGV-DAYTV 528

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTI 276
             +   +++    +       +    +
Sbjct: 529 MSYPKKESFLESLMNTNPGKYVKARML 555



 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 103/277 (37%), Gaps = 29/277 (10%)

Query: 1   MEFVLKKIKTRYV---MLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQIE------ 48
           ++F L  I    V   ++  +++ V +   SS   +       +  + + G +       
Sbjct: 5   LKFTLATITGLIVTGVIVFFISILVFFSMVSSSESETQIRKNSIMMLDLNGALAERSQEN 64

Query: 49  -------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95
                           +++  I++   ++    + +  +S      + E I  A++  K 
Sbjct: 65  PFEFLLDDEYSTYGLDDILSSIKKAKENEEIKGIYIQATSLATGFASLEEIRSALKDFKE 124

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
               I    +  +   Y +S  ++ ++     ++   G+     + K  L K+GV ++  
Sbjct: 125 SGKFIVAYGDTYSQGLYYLSSVADKVLLNPQGMIEWRGLAAAPMFFKDLLAKIGVEMQVF 184

Query: 156 KSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
           K    K+   PF  +E++P   + +   + S +      V+ESR +  D    ++D  I 
Sbjct: 185 KVGTYKSAVEPFVSTEMSPANREQVNVYLASIWGQLTSDVAESRKVSVDSLNAIADRMIM 244

Query: 214 T--GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                E+ K GL D +  + +V   L A+       +
Sbjct: 245 FHPAEESVKCGLADTLIYKNDVRNYLKAMAGIDEDDR 281


>gi|258624166|ref|ZP_05719116.1| Periplasmic serine protease [Vibrio mimicus VM603]
 gi|258583597|gb|EEW08396.1| Periplasmic serine protease [Vibrio mimicus VM603]
          Length = 319

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/284 (23%), Positives = 125/284 (44%), Gaps = 16/284 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSS----HVEDNSPHVARIAIRGQIE-----DSQELI 54
           +L+ ++    +L ++   ++  +         +  +PH A I IRG+I      D+  LI
Sbjct: 34  MLRVLRASGFVLLMIGFIILASNPGGMPWQSAKAGAPHTAYINIRGEIAAGTLADTDHLI 93

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAG 111
             I+    + ++ A+++ ++SPGGS      I+  +   + +   K V   + ++ AS G
Sbjct: 94  PSIQAAFDNPNSQAIVLRINSPGGSPVQAGRIYDEVKAQRALHPEKKVYAIIDDIGASGG 153

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I A   SLVGSIGV+         +DKLG+  +++ S   KA   PFS + 
Sbjct: 154 YYIASAADEIYADRASLVGSIGVISSGFGFTGLMDKLGIERRAITSGEHKALLDPFSPLT 213

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
               +  + V+  ++  F+  V   R         +  G +W G +AK +GLID +G   
Sbjct: 214 SDMKKFWEGVLSKTHQQFIERVKAGRGDRLKDDPEVFSGLLWNGEQAKDIGLIDGLGSLN 273

Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
            V + +            +D              L  SS +++ 
Sbjct: 274 SVARDVIHQSNLVDYTPTEDIIRR----LTQRAKLEASSFVQEL 313


>gi|118602039|ref|YP_908739.1| peptidase [Photobacterium damselae subsp. piscicida]
 gi|118614779|ref|YP_908562.1| peptidase [Photobacterium damselae subsp. piscicida]
 gi|134044555|ref|YP_001101707.1| signal peptide peptidase SppA domain-containing protein [Yersinia
           ruckeri]
 gi|134044941|ref|YP_001102082.1| signal peptide peptidase SppA domain-containing protein [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|134047167|ref|YP_001101892.1| signal peptide peptidase SppA domain-containing protein [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|229516096|ref|ZP_04405546.1| hypothetical protein VCC_000110 [Vibrio cholerae RC9]
 gi|300925750|ref|ZP_07141608.1| putative signal peptide peptidase SppA [Escherichia coli MS 182-1]
 gi|118596870|dbj|BAF38174.1| peptidase [Photobacterium damselae subsp. piscicida]
 gi|118597048|dbj|BAF38351.1| peptidase [Photobacterium damselae subsp. piscicida]
 gi|133904918|gb|ABO40935.1| signal peptide peptidase SppA domain protein [Yersinia ruckeri]
 gi|133905086|gb|ABO41101.1| signal peptide peptidase SppA domain protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|133905475|gb|ABO42237.1| signal peptide peptidase SppA domain protein [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|229346876|gb|EEO11844.1| hypothetical protein VCC_000110 [Vibrio cholerae RC9]
 gi|300418172|gb|EFK01483.1| putative signal peptide peptidase SppA [Escherichia coli MS 182-1]
 gi|324007588|gb|EGB76807.1| putative signal peptide peptidase SppA [Escherichia coli MS 57-2]
          Length = 325

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/284 (23%), Positives = 125/284 (44%), Gaps = 16/284 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSS----HVEDNSPHVARIAIRGQIE-----DSQELI 54
           +L+ ++    +L ++   ++  +         +  +PH A I IRG+I      D+  LI
Sbjct: 40  MLRVLRASGFVLLMIGFIILASNPGGMPWQSAKAGAPHTAYINIRGEIAAGTLADADHLI 99

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAG 111
             I+    + ++ A+++ ++SPGGS      I+  +   + +   K V   + ++ AS G
Sbjct: 100 PSIQAAFDNPNSQAIVLRINSPGGSPVQAGRIYDEVKAQRALHPEKKVYAIIDDIGASGG 159

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I A   SLVGSIGV+         +DKLG+  +++ S   KA   PFS + 
Sbjct: 160 YYIASAADEIYADRASLVGSIGVISSGFGFTGLMDKLGIERRAITSGEHKALLDPFSPLT 219

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
               +  + V+  ++  F+  V   R         +  G +W G +AK +GLID +G   
Sbjct: 220 SDMKKFWEGVLSKTHQQFIERVKAGRGDRLKDDPEVFSGLLWNGEQAKDIGLIDGLGSLN 279

Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
            V + +            +D              L  SS +++ 
Sbjct: 280 SVARDVIHQSNLVDYTPTEDIIRR----LTQRAKLEASSFVQEL 319


>gi|157828572|ref|YP_001494814.1| protease IV [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933286|ref|YP_001650075.1| signal peptide peptidase [Rickettsia rickettsii str. Iowa]
 gi|2944013|gb|AAC05202.1| putative protease IV [Rickettsia rickettsii str. 'Sheila Smith']
 gi|2970341|gb|AAC05973.1| putative protease IV [Rickettsia rickettsii str. 'Sheila Smith']
 gi|157801053|gb|ABV76306.1| protease IV [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908373|gb|ABY72669.1| signal peptide peptidase [Rickettsia rickettsii str. Iowa]
          Length = 304

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 152/298 (51%), Gaps = 15/298 (5%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSW-----------SSHVEDNSPHVARIAIRGQIEDSQEL 53
            ++IK+R ++  L  + ++   +              +  N  ++A + I   I + ++ 
Sbjct: 11  RRQIKSRLLIWKLAAIILIAIVFLLVGKDFAPKEVLPINSNEDYIASVLIDEIILEDEKR 70

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
            +++++I  D    ALIV+++SPGG+    E I+  ++K+  +KPV+  +  MAAS GYL
Sbjct: 71  DKKLKKIIDDSHIKALIVNVNSPGGTVVGAEKIYNILRKISAKKPVVIVMGTMAASGGYL 130

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           IS   + I++   ++ GSIGV+ Q   V     KLG+   + KS  +KA P+P  ++   
Sbjct: 131 ISLGGDYIISHNGTITGSIGVILQTAEVTELAQKLGIKFNNFKSGELKAVPNPTEKLTEA 190

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
               + D ++ +Y++F+ LVSE RN+P ++   L+DGR+++G +A K+ L+D +G ++  
Sbjct: 191 VRVAIMDNIEDTYNFFLELVSERRNLPIEEVKKLADGRVYSGRQALKLKLVDAIGSEDTA 250

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
            + L  +        +KD+         D+      S+     P   +    G+ A++
Sbjct: 251 LKWLQEVQKINVNLLVKDYQLKPKPTLMDIILEDFDSIA----PSFFKNSFNGIKAIF 304


>gi|300704627|ref|YP_003746230.1| peptidase s49 [Ralstonia solanacearum CFBP2957]
 gi|299072291|emb|CBJ43624.1| Peptidase S49 [Ralstonia solanacearum CFBP2957]
          Length = 350

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 129/291 (44%), Gaps = 15/291 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60
           +I  R+V L ++   +  F S+      +  H A +A+ G+I       ++ +   +E  
Sbjct: 64  RIFFRFVTLGILGGLLYLFASFEGETVGSGRHTAVVALDGEIAANTNASAENINASLEAA 123

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCA 117
             DD+   +I+ ++SPGGS      I   I++++ +   I     V EM AS GY ++ A
Sbjct: 124 FADDNTAGVILKINSPGGSPVQAGMINDDIRRLRAKHKDIPLYVVVEEMCASGGYYVAAA 183

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           ++ I   + S+VGSIGVL         +DK+GV  + + +   K    PFS V P+  Q 
Sbjct: 184 ADKIYVDKASIVGSIGVLMDGFGFTGLMDKVGVERRLLTAGANKGMLDPFSPVPPQQRQF 243

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
            Q ++D  +  F+ +V + R         L  G  WTG++A ++GL D VG  + V +  
Sbjct: 244 AQAMLDEVHQQFIDVVKQGRGSRLKDDPQLFSGLFWTGSKAVELGLADGVGSADFVAR-- 301

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                      + D+   +N+     +    +        L    +++ L 
Sbjct: 302 ----NVIKAPDMVDYTVKENFAERVARKFGTAMGAGAIKALAATGQLKLLM 348


>gi|311695110|gb|ADP97983.1| family S49 unassigned peptidase [marine bacterium HP15]
          Length = 347

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 122/286 (42%), Gaps = 17/286 (5%)

Query: 8   IKTRYVMLSLVTLTVVYFSW---SSHVEDNSPHVARIAIRGQIE-----DSQELIERIER 59
           I  +++    +   +    +    S       H A + I G I       +  ++  +  
Sbjct: 64  IFFKFLTFGYLIALLFLIKFPLGDSLEGVTGKHTALVEINGPIAADELASADNIVGSLRT 123

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISC 116
              + ++ A+I+ ++SPGGS      ++  I+++      K V   + ++ AS  Y I+ 
Sbjct: 124 AFEEPNSVAVILRINSPGGSPVQSGYVYDEIKRLREEYPEKKVYAVISDIGASGAYYIAA 183

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
           A++ I A   SLVGSIGV+         ++K+GV  +   +   KA   PFS    + V 
Sbjct: 184 AADEIYANRASLVGSIGVVAGGFGFTEVMEKIGVDRRLYTAGENKAFLDPFSPEQEEEVT 243

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
             Q V+++++  F+  V + R         L  G +W+G +A ++GL D +G    V + 
Sbjct: 244 FWQSVLENTHQQFIEAVKQGRGDRLADDERLFSGLVWSGEQAVELGLADGLGSASHVARQ 303

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282
           +          ++ D++  K+ +   +  L ++        L++  
Sbjct: 304 IIGQ------EELVDYSRRKSPFQDIVDQLGVAFGEGFASQLVESR 343


>gi|153826825|ref|ZP_01979492.1| protease IV [Vibrio cholerae MZO-2]
 gi|149739346|gb|EDM53592.1| protease IV [Vibrio cholerae MZO-2]
          Length = 616

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 14/287 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           +       +       ++  +A +   G I D            +   +     D +  A
Sbjct: 307 IGYYEYKTTIKPTTLTDANDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   I+ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +  L+ LG+    V ++P  +     + +   A   +Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGLTTGLTQGAKDAIQLGIEHGYQ 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F+ LV+E R +       L+ GR+WT  +A+ +GL+D +G  ++       L      +
Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           +  +++   P   +  DL      SL  D +  +    +Q L   W 
Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSTLLPKSLQPLAVEWQ 591



 Score = 90.4 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 100/284 (35%), Gaps = 37/284 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51
           + F+   +     +LS+  +  +Y    + +       A  + + G I +          
Sbjct: 19  ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            +++E +     D++ T L+++    P  +      I +AI + 
Sbjct: 79  FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203
             +    K+   PF   +++  A +     +   +  +V  V+ +R I          + 
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEEF 258

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
              L +      A +KKVGL+D +  +++V Q+L          
Sbjct: 259 VAQLKEVNGDLAALSKKVGLVDELATRQQVCQTLAETFGSDGKD 302


>gi|149275724|ref|ZP_01881869.1| protease IV [Pedobacter sp. BAL39]
 gi|149233152|gb|EDM38526.1| protease IV [Pedobacter sp. BAL39]
          Length = 591

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 110/252 (43%), Gaps = 11/252 (4%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSS 75
            + ++  +     +A I   G+I           S+ +   I +   D S  A+++ ++S
Sbjct: 298 IATTNKSKSGKNKIAVIYANGEITGGEGSDEQIGSERISRTIRKARSDSSVKAIVLRVNS 357

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           PGGSA A + I+R I   K  KPVI     +AAS GY I CA++ I     ++ GSIGV 
Sbjct: 358 PGGSALASDVIWREIVLAKKVKPVIASFGNVAASGGYYIGCAADSIFVQPNTITGSIGVF 417

Query: 136 FQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
              P  +  L  +LG++   VK+       S    +      ++Q+ V+ +Y  F+  V+
Sbjct: 418 GVIPNFQKLLNKELGITFDGVKTGTYADIMSVNRPLTAGERFIIQNEVNRTYDGFITRVA 477

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           + R         +  GR+W G +A ++GL D  G   +   +       +   K+ ++  
Sbjct: 478 DGRKRSKSYIDSIGGGRVWVGTDAVRLGLADRTGSFNDAITAAVKKAKLKE-YKVVEYPE 536

Query: 255 PKNYWFCDLKNL 266
             N     + N 
Sbjct: 537 VINPLKSLMDNG 548



 Score = 95.8 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 111/286 (38%), Gaps = 37/286 (12%)

Query: 1   MEFVLKKIKT-------RYVMLSLVTLTVVY-----FSWSSHVEDNSPHVARIAIRGQIE 48
           M+   K +          +V+++++ + +V       S    VE  S  V  + +   I 
Sbjct: 1   MKDFFKYVFATVVGIVVSFVLITILAILIVVGMVSSISDDKTVEVKSNSVLFLNLDQNIT 60

Query: 49  ----------------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
                                    ++I+ ++    D++   + +++SSP       + I
Sbjct: 61  ERTISDPLADLPYIGGDDAKSIGFTDIIKALDAAKTDNNIRCVYLNVSSPNAGFANMKEI 120

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
             A+   +  +  I    E+ +   Y ++ A++ I       +   G+  +  + K  L+
Sbjct: 121 RDAMIDFRKSRKKIIAYSEVYSQGAYYLASAADKIYLNPEGALEFKGLSSEIMFFKGALE 180

Query: 147 KLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           KLG+  + ++    K+   PF   +++ K  + +   ++  Y  F+  +S SR I  D  
Sbjct: 181 KLGIEAQIIRVGTYKSAVEPFINDKMSDKNREQVTVYLNGLYRTFLGGISASREIDADSL 240

Query: 205 LVLSDG-RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
             ++D  +I    +A K  L+D +  +++V + L  L        I
Sbjct: 241 YAIADQYKIQQPNDALKYKLVDQLAYKDKVLEELKKLSDTDPSDNI 286


>gi|118616594|ref|YP_904926.1| protease IV, Ssp [Mycobacterium ulcerans Agy99]
 gi|118568704|gb|ABL03455.1| protease iv, Ssp [Mycobacterium ulcerans Agy99]
          Length = 600

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/275 (23%), Positives = 119/275 (43%), Gaps = 17/275 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70
            S       P +A +++ G I                     +   +   + DD  +A++
Sbjct: 298 PSIPGRRGKPTIAVVSVEGPIVNGRGGPQGLPLGPSSAGGDTIASALGETAADDEVSAIV 357

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + + SPGGS  A E I+R +Q+ ++R K V+  +  +AAS GY +S  ++ IVA   ++ 
Sbjct: 358 LRVDSPGGSVTASETIWREVQRARDRGKSVVASMGSIAASGGYYVSMGADAIVANPGTIT 417

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+     V+   D+LGV  ++++++      S  +    +     +   D  Y  F
Sbjct: 418 GSIGVITGKLVVRDLKDRLGVGSETLRTNANADAWSIDAPFTDEQRARREAEADMFYTDF 477

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
              V+  RN+  +    ++ GR+WTGA+A + GL+D +GG          L       ++
Sbjct: 478 AERVARGRNLRTEDVDAVARGRVWTGADALERGLVDELGGFRTAVPRAKVLAGLDEDTEV 537

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
           +    P +     L     S  +  ++P      V
Sbjct: 538 RPVGYPGSLLLDLLWPRGSSRPVAASVPEAVGALV 572



 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 76/200 (38%), Gaps = 2/200 (1%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           ++ +  + R + D     LI  +  P     A +A+  AI      KP +        + 
Sbjct: 69  RDAVAALHRGAEDPRVGGLIARVQLPPAPIGAVQALREAIAAFSAVKPSVAWAETYPGTL 128

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169
            Y ++ A   I    +   G IG      ++   LDK+G+  + V     K+    F+E 
Sbjct: 129 SYYLATAFREIWMQPSGEAGLIGFASNAMFLCDALDKVGIEAQFVARGEYKSAADLFTED 188

Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
                  + +  +++S        V++SR I       L+D       EA   GLID +G
Sbjct: 189 GYTDANREAVTRMLESLQDQAWHAVAQSRQIDAGVLDELADKAPLLRDEALSSGLIDRIG 248

Query: 229 GQEEVWQSLYALGVDQSIRK 248
            ++E +  +  L   + +  
Sbjct: 249 FRDEAYARIAELARVEGVSP 268


>gi|120554791|ref|YP_959142.1| peptidase S49 [Marinobacter aquaeolei VT8]
 gi|120324640|gb|ABM18955.1| peptidase S49 [Marinobacter aquaeolei VT8]
          Length = 349

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 126/290 (43%), Gaps = 19/290 (6%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDN-----SPHVARIAIRGQIE-----DSQELIE 55
           ++    + +L+   L  + F   +   +        H A + + G I       +  L+ 
Sbjct: 62  RRWGIFFKLLTFGYLFALLFMIRAPFGEGVGATVGSHTALVEVNGPIAADELASADNLVG 121

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGY 112
            +      +S+ A+++ ++SPGGS      ++  I+++      K +   + ++ AS  Y
Sbjct: 122 ALRAAFEAESSKAVVLRINSPGGSPVQSGYVYDEIKRLREEYPDKKIYAVISDIGASGAY 181

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            I+ A++ I A   SLVGSIGV+         ++K+GV  +   +   KA   PFS    
Sbjct: 182 YIAAAADEIYANRASLVGSIGVVAGGFGFTEAMEKIGVDRRLYTAGDNKAFLDPFSPEQE 241

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
           + V   Q V+++++  F+  V + R         L  G +W+G +A ++GL+D +G    
Sbjct: 242 EEVAFWQSVLENTHKQFIEAVRQGRGDRLADDPRLFSGLVWSGEQAVELGLVDGLGSSSW 301

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282
           V + L          ++ D++  ++ +   +  L ++        LM+  
Sbjct: 302 VARQLVG------EEELVDYSRSRSPFQEFVDQLGVAVGEGVATRLMESR 345


>gi|319902957|ref|YP_004162685.1| signal peptide peptidase A [Bacteroides helcogenes P 36-108]
 gi|319417988|gb|ADV45099.1| signal peptide peptidase A [Bacteroides helcogenes P 36-108]
          Length = 591

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 71/257 (27%), Positives = 130/257 (50%), Gaps = 14/257 (5%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATA 68
           +V    +   + +   +A     G+I              +S+++I+ + ++  D    A
Sbjct: 291 MVNIKKNVPKDKSGNVIAIYYAYGEIDGGSSSTLTGEEGINSEKVIKDLRKLKDDKDVKA 350

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           +++ ++SPGGSAY  E I+ A+ ++K +KPVI  + + AAS GY ISC ++ IVA  T+L
Sbjct: 351 VVLRVNSPGGSAYGSEQIWYAVSELKKKKPVIVSMGDYAASGGYYISCNADTIVAEPTTL 410

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIG+   +P  K   DK+G+S   VK++           +N     ++Q  ++  Y  
Sbjct: 411 TGSIGIFGMFPNAKGLADKIGISFDVVKTNRYSDFGMITRPMNEGEKGLLQMYINQGYDT 470

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           F+   SE R I  ++   ++ GR+WTG++AK++GL+D +GG +   +   A         
Sbjct: 471 FLARCSEGRGISKEELDKIAQGRVWTGSKAKELGLVDELGGIDRALEIAIAKAG-TDTYT 529

Query: 249 IKDWNPPKNYWFCDLKN 265
           I  +   +N+    + +
Sbjct: 530 IMSYPKKENFLESFMNS 546



 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 102/278 (36%), Gaps = 30/278 (10%)

Query: 1   MEFVLKKIKTRY---VMLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQIE------ 48
           ++F L  I       ++L  +++ V +   SS   +       +  + + G +       
Sbjct: 5   LKFTLATITGIIVSSIILFFISILVFFSIVSSSDSETQVRKNSIMMLDLNGMLAERTQEN 64

Query: 49  -------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVK 94
                           +++  I++   +     + +   S GG+++A  E I  +++  K
Sbjct: 65  PFDFLLGDEYNTYGLDDILSSIKKAKENADIKGIYIQACSLGGASFASLEEIRNSLKDFK 124

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
                I    +    + Y +S  ++ ++      V   G+     + K  L K+GV ++ 
Sbjct: 125 ESGKFIVAYGDTYTQSLYYLSSIADKVLLNPKGAVEWKGLAASPMFFKDLLGKIGVEMQI 184

Query: 155 VKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-- 210
            K    K+   PF  +E++P   + +   + S +   +  V+ SR I  D     ++   
Sbjct: 185 FKVGTYKSAVEPFISTEMSPANREQVNAYLASIWKQIMGDVATSRKISVDSLNAAANSML 244

Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
             +      K GL D +  + +V   L  +   +   K
Sbjct: 245 MFYPAERCVKAGLADTLIYKNDVRNYLKTMAGIEENDK 282


>gi|298385314|ref|ZP_06994873.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 1_1_14]
 gi|298262458|gb|EFI05323.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 1_1_14]
          Length = 593

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 72/273 (26%), Positives = 133/273 (48%), Gaps = 13/273 (4%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRD 63
            L    ++    +   + +   VA     G+I D              ++I  + ++  D
Sbjct: 287 VLGLSDMINVKKNMPKDKSGNIVAVYYASGEITDYSSSSTSEEGIVGTKVIRDLRKLKDD 346

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
           +   A+++ ++SPGGSA+A E I+ A++++K  KPVI  + + AAS GY ISC ++ IVA
Sbjct: 347 EDVKAVVLRVNSPGGSAFASEQIWHAVKELKTEKPVIVSMGDYAASGGYYISCVADTIVA 406

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
             T+L GSIG+    P VK   +K+G++   VK++      +     N     +MQ ++ 
Sbjct: 407 EPTTLTGSIGIFGMVPNVKELSEKIGLTYDVVKTNKFSDFGNIMRPFNQDEKTLMQMMIT 466

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
             Y  FV   +E R++  +    +++GR+WTG  AK++GL+DV+GG +   +        
Sbjct: 467 QGYDTFVNRCAEGRHMSKEAIEKIAEGRVWTGEAAKELGLVDVLGGIDTALEIAVRKAGI 526

Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
           +    +  +   ++     L     ++ +E  I
Sbjct: 527 EG-YTVVSYPAKQDLLSSLLNTKPTNNYVESQI 558



 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 98/264 (37%), Gaps = 26/264 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49
             ++ +VTL  +  +  +        V  + + G +                        
Sbjct: 22  LFIIGMVTLFGIVSTADTETIVKKNSVMMLDLNGVLVERTQESPLGILSQLFSDDSNTYG 81

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
             +++  I++   +++   + +  S  G S  + + I  A+   K     I    +    
Sbjct: 82  LDDILSSIKKAKENENIKGIYLQASMLGTSYASLQEIRNALLDFKESGKFIIAYGDSYTQ 141

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y +S  ++ ++     ++   G+     + K  L K+GV ++  K    K+   PF  
Sbjct: 142 GLYYLSSVADKVLLNPKGMIEWKGIASAPLFYKDLLQKIGVEMQIFKVGTYKSAVEPFIS 201

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225
           +E++P   + +   ++S +      VS SR++P D    L+D     +   E+ + GL D
Sbjct: 202 TEMSPANREQVTAFINSIWGQVTEGVSASRSLPVDSLNALADRMLMFYPAEESVQCGLAD 261

Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249
            +  + +V   L      +   ++
Sbjct: 262 TLIYRNDVRNYLKQWVDLKEDDRL 285


>gi|293405264|ref|ZP_06649256.1| protease 4 [Escherichia coli FVEC1412]
 gi|298380907|ref|ZP_06990506.1| protease IV [Escherichia coli FVEC1302]
 gi|300898997|ref|ZP_07117286.1| signal peptide peptidase SppA [Escherichia coli MS 198-1]
 gi|291427472|gb|EFF00499.1| protease 4 [Escherichia coli FVEC1412]
 gi|298278349|gb|EFI19863.1| protease IV [Escherichia coli FVEC1302]
 gi|300357394|gb|EFJ73264.1| signal peptide peptidase SppA [Escherichia coli MS 198-1]
          Length = 666

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 367 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 426

Query: 80  AYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 427 VTASEVIRAELAAARSAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 486

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 487 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 545

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 546 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 604

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 605 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 633



 Score =  100 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 67  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 126

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 127 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 186

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 187 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 246

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 247 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 306

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 307 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 354


>gi|254992106|ref|ZP_05274296.1| hypothetical protein LmonocytoFSL_02749 [Listeria monocytogenes FSL
           J2-064]
          Length = 337

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 71/280 (25%), Positives = 134/280 (47%), Gaps = 19/280 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76
            E  +  +A +++ G I+D+ +               ++++E++  DD+   +++ ++SP
Sbjct: 56  EEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLEQVRNDDNIQGVLLYVNSP 115

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG       I   I +++  +  P    +  MAAS GY IS  ++ I A++ +L GS+GV
Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           + Q       + KLGVS  ++KS   K   S    +     ++MQ ++D SY+ FV++V+
Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           + R +  ++   ++DGRI+ G +AK+ GLID  G QE+  ++L           I+   P
Sbjct: 236 QGRGMTVEQVHKIADGRIYDGRQAKENGLIDEFGYQEDALEALKKEQGLAGATVIQYDAP 295

Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291
                   +    IS   + +   I L    K   +  ++
Sbjct: 296 GDFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYLY 335


>gi|325299675|ref|YP_004259592.1| signal peptide peptidase SppA, 67K type [Bacteroides salanitronis
           DSM 18170]
 gi|324319228|gb|ADY37119.1| signal peptide peptidase SppA, 67K type [Bacteroides salanitronis
           DSM 18170]
          Length = 588

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 126/272 (46%), Gaps = 13/272 (4%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQ----------ELIERIERISRDDSATALIVSLSSPGGS 79
             + +   +A     G I   +          ++ + + R+  D+S  A++  ++SPGGS
Sbjct: 299 PKDKSGNVLAVYYATGTIGSGELSADEGIHPEKVAKDLRRLREDESVKAVVFRVNSPGGS 358

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           A+  E I+R I  +K +KPVI  + + AAS GY I+CA++ I+A  T+L GSIG+    P
Sbjct: 359 AFGSEEIWREITLLKEQKPVIVSMGDYAASGGYYIACAADWIIAQPTTLTGSIGIFGYIP 418

Query: 140 YVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             +  L DKLG+    VK++ +            +   +MQ++V+  Y  F +  ++ R 
Sbjct: 419 NAEKLLNDKLGIHFDGVKTNKLSDLGDISRPFTEEETALMQNMVNHGYELFTQRCADGRK 478

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           +P D+   +++GR+WTG  AK + L+D +GG +            ++        P +  
Sbjct: 479 MPVDEIKRIAEGRVWTGKMAKDLKLVDELGGIDRAIAVAAERAEIENYT--VMSYPKQED 536

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
           +F  L +      L   +        +    +
Sbjct: 537 FFSSLLSSGTDRYLSARLKAELGALYEPFRYL 568



 Score = 99.3 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 106/283 (37%), Gaps = 34/283 (12%)

Query: 1   MEFVLKKIKTR----------YVMLSLVTL-TVVYFSWSSHVEDNSPHVARIAIRGQIE- 48
           M+  LK +             + ++ ++++  +V  S  S  + +   V  + ++G +E 
Sbjct: 1   MKDFLKYMLAAIVGVCIVGVVFAIIGVMSIAGMVASSSGSETKVSDNSVFILNLKGSVEE 60

Query: 49  ------------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
                                +++  I++   ++    + +   +      + E I  A+
Sbjct: 61  RVQPNPLSQLVGEEFGTYGLDDILGSIKKAKDNEKIKGICLDAGAFVCPPASLEEIRNAL 120

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           +  K     I         + Y ++  ++ +       +G  G+  Q  ++K  LDK+GV
Sbjct: 121 KDFKESGKFIVAYGGNYLQSTYYLASVADKVAINPQGSLGWHGLATQTYFLKDLLDKIGV 180

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
            ++  +    K+   P+  +E++P   +  Q   +S +   V  V+ SR IP D    L+
Sbjct: 181 EMQIFRVGTYKSAVEPYTSTEMSPANREQTQAFANSIWGQMVDEVAASRRIPADSLNALA 240

Query: 209 DGRIWT--GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           D  +         K GL D +  Q+E+   L  L        +
Sbjct: 241 DRNMDLQPAELYIKTGLADTLMYQDEMLAYLKQLTETDEDDAL 283


>gi|319763864|ref|YP_004127801.1| peptidase s49 [Alicycliphilus denitrificans BC]
 gi|330823872|ref|YP_004387175.1| peptidase S49 [Alicycliphilus denitrificans K601]
 gi|317118425|gb|ADV00914.1| peptidase S49 [Alicycliphilus denitrificans BC]
 gi|329309244|gb|AEB83659.1| peptidase S49 [Alicycliphilus denitrificans K601]
          Length = 346

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 123/287 (42%), Gaps = 14/287 (4%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIER 59
               +  +++L ++    V     +    ++PH A + ++G+I       ++ ++  +  
Sbjct: 65  RNFWRFGWLVLIVLVGWAVVSRDIASPAKSAPHTAVVDVKGEIAAGAEASAEFVVAAMRS 124

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCA 117
              D  + A+++ ++SPGGS      I   I ++K +  KPV   V E  ASA Y I+ A
Sbjct: 125 AFEDSGSQAVVLLINSPGGSPVQAGMINDEIVRLKAKYNKPVYAVVEETCASAAYYIAAA 184

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           ++ I   + S+VGSIGVL         ++KLGV  + + +   K    PFS  +P     
Sbjct: 185 ADDIFVDKASIVGSIGVLMDGFGFTGTMEKLGVERRLLTAGENKGFLDPFSPQSPTQRGY 244

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
            Q ++D  +  F+  V + R      T     G  WTG +A ++GL D  G  + V + +
Sbjct: 245 AQQMLDQIHQQFIAAVKKGRGERLKATPETFSGLFWTGQQAVEMGLADQFGSLDYVAREI 304

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
                      + D+    N      +    ++  E  +  M+   V
Sbjct: 305 VK------AEDVIDYTRRDNVAERLARKFG-ATFGETVLRGMRAAPV 344


>gi|58580196|ref|YP_199212.1| protease IV [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58424790|gb|AAW73827.1| protease IV [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 642

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/278 (24%), Positives = 120/278 (43%), Gaps = 11/278 (3%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVS 72
           +          D+ P VA +   G+I            +     + +   D+   A+++ 
Sbjct: 329 LSQLQAQDSPMDSRPQVAVVVATGEISGGEQPAGRIGGESTAALLRQARDDEKVKAVVLR 388

Query: 73  LSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
           + SPGG  +A E I R +  + +  KPV+  + ++AAS GY IS  ++ I A  +++ GS
Sbjct: 389 VDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGS 448

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IG+    P +   LDK+GV    V ++           ++P A Q++Q V++  Y  F  
Sbjct: 449 IGIFGMVPNLTRALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTG 508

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
            V+++R+   D    ++ GR+W+GA+AK+ GL+D  GG  E              +    
Sbjct: 509 KVAQARHQSVDAIDKVARGRVWSGAQAKERGLVDAFGGMSEAVADAADRAKLSRGKFRVR 568

Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +       F    N    S +   + L      + L A
Sbjct: 569 YVEKPATPFSQFMNGFAGSRMGAWM-LSDSGMARALVA 605



 Score = 70.4 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 98/288 (34%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRGQIEDS------ 50
           M F  + I        L  L +V+    +  +   P        I   G + +       
Sbjct: 30  MNFTRRLIFNLVFFGFLFMLLLVFVVALARGDGTKPLAERTTLVINPEGTLVEQFSADPV 89

Query: 51  ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQ 91
                             ++L+  IE   +D     ++++L     S +A +  +  A+Q
Sbjct: 90  SRSLAKAVGDKSAQEVQLRDLVRVIEAAGKDRKIERVLLNLDKFQPSGFASQREVAAALQ 149

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGV 150
           K++     I    E  +   YL++  +N +       V   G+  ++  + +   DKLGV
Sbjct: 150 KLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGV 209

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
            +   +    K+   P+     +  A +     ++  +  ++  V  +R +   +     
Sbjct: 210 DVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWQRYLADVVTARKLSPAQLTAGI 269

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 ++         A +  L+D +  +EEV   L   GV  S  +
Sbjct: 270 DTLPEGVAAAGGDLAKFALQQKLVDGLKTREEVDALLVKRGVADSDAE 317


>gi|309796456|ref|ZP_07690864.1| putative signal peptide peptidase SppA [Escherichia coli MS 145-7]
 gi|308119961|gb|EFO57223.1| putative signal peptide peptidase SppA [Escherichia coli MS 145-7]
          Length = 325

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/284 (23%), Positives = 126/284 (44%), Gaps = 16/284 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSS----HVEDNSPHVARIAIRGQIE-----DSQELI 54
           +L+ ++    +L ++   ++  +         +  +PH A I IRG+I      D+  LI
Sbjct: 40  MLRVLRASGFVLLMIGFIILASNPGGMPWQSAKAGAPHTAYINIRGEIAAGTLADADHLI 99

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAG 111
             I+    + ++ A+++ ++SPGGS      I+  +   + +   K V   + ++ AS G
Sbjct: 100 PSIQAAFDNPNSQAVVLRINSPGGSPVQAGRIYEEVKAQRALHPEKKVYAIIDDIGASGG 159

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I A   SLVGSIGV+         +D+LG+  +++ S   KA   PFS + 
Sbjct: 160 YYIASAADEIYADRASLVGSIGVISSGFGFTGLMDRLGIERRAITSGEHKALLDPFSPLT 219

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
               +  + V+  ++  F+  V   R         +  G +W G +AK++GLID +G   
Sbjct: 220 SDMKKFWEGVLSKTHQQFIERVKAGRGDRLKDAPEVFSGLLWNGEQAKEIGLIDGLGSLN 279

Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
            V + +            +D              L  SS +++ 
Sbjct: 280 SVARDVIHQSNLVDYTPTEDIIRR----LTQRAKLEASSFVQEL 319


>gi|170768773|ref|ZP_02903226.1| protease 4 [Escherichia albertii TW07627]
 gi|170122321|gb|EDS91252.1| protease 4 [Escherichia albertii TW07627]
          Length = 618

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRSELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  L+ +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R 
Sbjct: 439 TTVENSLNSIGVHTDGVSTSPLAD-ISITKALPPEAQQMMQLSIENGYKRFITLVADARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPETFQAMLPAPLA 585



 Score = 99.3 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 101/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S S   E        + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSNSDTKETAGRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  RLSRQLLGASSDRRQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  + E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAIGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A    L+D +    E+ ++L          K
Sbjct: 259 QGLLDGLTKTGGDTAKYALDNKLVDALASSAEIEKALTKEFGWNKADK 306


>gi|15892681|ref|NP_360395.1| protease IV [Rickettsia conorii str. Malish 7]
 gi|15619853|gb|AAL03296.1| protease IV [Rickettsia conorii str. Malish 7]
          Length = 304

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 152/298 (51%), Gaps = 15/298 (5%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSW-----------SSHVEDNSPHVARIAIRGQIEDSQEL 53
            ++IK+R ++  L  + ++   +              +  N  ++A + I   I + ++ 
Sbjct: 11  RRQIKSRLLIWKLAAIILIAIVFLLVGKDFAPKEVLPINSNEDYIASVLIDEIILEDEKR 70

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
            +++++I  D    ALIV+++SPGG+    E I+  ++K+  +KPV+  +  MAAS GYL
Sbjct: 71  DKKLKKIIDDSHIKALIVNVNSPGGTVVGAEKIYNILRKISAKKPVVIVMGTMAASGGYL 130

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           IS   + I++   ++ GSIGV+ Q   V     KLG+   + KS  +KA P+P  ++   
Sbjct: 131 ISLGGDYIISHNGTITGSIGVILQTAEVTELAQKLGIKFNNFKSGELKAVPNPTEKLTEA 190

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
               + D ++ +Y++F+ LVSE RN+P ++   L+DGR+++G +A K+ L+D +G ++  
Sbjct: 191 VRVAIMDNIEDTYNFFLELVSERRNLPIEEVKKLADGRVYSGRQALKLKLVDAIGSEDTA 250

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
            + L  +        +KD+         D+      S+     P   +    G+ A++
Sbjct: 251 LKWLQEVQKINVNLLVKDYQLKPKPKLMDIILEDFDSIA----PSFFKNSFNGIKAIF 304


>gi|34581630|ref|ZP_00143110.1| protease IV [Rickettsia sibirica 246]
 gi|28263015|gb|EAA26519.1| protease IV [Rickettsia sibirica 246]
          Length = 304

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 146/292 (50%), Gaps = 10/292 (3%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWS------SHVEDNSPHVARIAIRGQIEDSQELIERIER 59
           + +  +   + L+ +  +             +  N  ++A + I   I + ++  +++++
Sbjct: 17  RLLIWKLTAIILIAIVFLLVGKDFAPKEVLPINSNEDYIASVLIDEIILEDEKRDKKLKK 76

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119
           I  D    ALIV+++SPGG+    E I+  ++K+  +KPV+  +  MA S GYLIS   +
Sbjct: 77  IIDDSHIKALIVNVNSPGGTVVGAEKIYNILRKISAKKPVVIVMGTMATSGGYLISLGGD 136

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179
            I++   ++ GSIGV+ Q   V     KLG+   + KS  +KA P+P  ++       + 
Sbjct: 137 YIISHNGTITGSIGVILQTAEVTELAQKLGIKFNNFKSGELKAVPNPTEKLTEAVRVAIM 196

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
           D ++ +Y++F+ LVSE RN+P ++   L+DGR+++G +A K+ L+D +G ++   + L  
Sbjct: 197 DNIEDTYNFFLELVSERRNLPIEEVKKLADGRVYSGRQALKLKLVDAIGSEDTALKWLQE 256

Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
           +        +KD+         D+      S+     P   +    G+ A++
Sbjct: 257 VQKINVNLLVKDYQLKPKPKLMDIILEDFDSIA----PSFFKNSFNGIKAIF 304


>gi|84622191|ref|YP_449563.1| protease IV [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84366131|dbj|BAE67289.1| protease IV [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 633

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/278 (24%), Positives = 120/278 (43%), Gaps = 11/278 (3%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVS 72
           +          D+ P VA +   G+I            +     + +   D+   A+++ 
Sbjct: 320 LSQLQAQDSPMDSRPQVAVVVATGEISGGEQPAGRIGGESTAALLRQARDDEKVKAVVLR 379

Query: 73  LSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
           + SPGG  +A E I R +  + +  KPV+  + ++AAS GY IS  ++ I A  +++ GS
Sbjct: 380 VDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGS 439

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IG+    P +   LDK+GV    V ++           ++P A Q++Q V++  Y  F  
Sbjct: 440 IGIFGMVPNLTRALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTG 499

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
            V+++R+   D    ++ GR+W+GA+AK+ GL+D  GG  E              +    
Sbjct: 500 KVAQARHQSVDAIDKVARGRVWSGAQAKERGLVDAFGGMSEAVADAADRAKLSRGKFRVR 559

Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +       F    N    S +   + L      + L A
Sbjct: 560 YVEKPATPFSQFMNGFAGSRMGAWM-LSDSGMARALVA 596



 Score = 70.0 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 97/288 (33%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRGQIEDS------ 50
           M F  + I        L  L +V+    +  +   P        I   G + +       
Sbjct: 21  MNFTRRLIFNLVFFGFLFMLLLVFVVALARGDGTKPLAERTTLVINPEGTLVEQFSADPV 80

Query: 51  ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQ 91
                             ++L+  IE   +D     ++++L     S +A +  +  A+Q
Sbjct: 81  SRSLAKAVGDKSAQEVQLRDLVRVIEAAGKDRKIERVLLNLDKFQPSGFASQREVAAALQ 140

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGV 150
           K++     I    E  +   YL++  +N +       V   G+  ++  + +   DKLGV
Sbjct: 141 KLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGV 200

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
            +   +    K+   P+     +  A +     ++  +  ++  V  +R +   +     
Sbjct: 201 DVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWQRYLADVVTARKLSPAQLTAGI 260

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 ++         A +  L+D +  +EEV   L   GV  S   
Sbjct: 261 DTLPEGVAAAGGDLAKFALQQKLVDGLKTREEVDALLVKRGVADSDAD 308


>gi|301167932|emb|CBW27517.1| putative protease [Bacteriovorax marinus SJ]
          Length = 359

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/286 (23%), Positives = 130/286 (45%), Gaps = 14/286 (4%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPH---VARIAIRGQIEDSQELIERIERISRDD 64
                +++   T TV  F+  S V D+      +A I + G I  ++E +E +E+  +D 
Sbjct: 63  FLFFVILMVFATFTVKVFNDESKVFDSQNKRGQIAVIEVSGPIMQAKETVELLEKAEKDK 122

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVK----------NRKPVITEVHEMAASAGYLI 114
           S  A+I+ ++SPGG+    + I+  I+++           + KP+      +AAS GY +
Sbjct: 123 SVKAIILRINSPGGAVGPTQEIYEEIRRIDSAYNPEDKTASGKPIYASFDAIAASGGYYL 182

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
             A+  I A+  +L GSIGV+  +  +    +   V    VK+   K   SP   +  + 
Sbjct: 183 GAAARKIYASPGTLTGSIGVIMNFTDLSKVFEYFKVKQTPVKAGKYKDIGSPHRSMTNEE 242

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPY-DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
             +M  ++   +  F+R +  +R      + L L+ G+I++G EAK++GL+D +G   + 
Sbjct: 243 SGLMNKMIQVVHKQFMRDIEATRKEKLTKEILELAQGQIFSGEEAKELGLVDELGSLWKA 302

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
            + ++     +    +K     K   F DL +    +     +  M
Sbjct: 303 GRDIHKELNLEGEFALKYIKKKKKSGFWDLVDNLDQATTNIRLSTM 348


>gi|57239342|ref|YP_180478.1| putative protease IV [Ehrlichia ruminantium str. Welgevonden]
 gi|58579308|ref|YP_197520.1| putative protease IV [Ehrlichia ruminantium str. Welgevonden]
 gi|57161421|emb|CAH58345.1| putative peptidase [Ehrlichia ruminantium str. Welgevonden]
 gi|58417934|emb|CAI27138.1| Putative Protease IV [Ehrlichia ruminantium str. Welgevonden]
          Length = 289

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 82/261 (31%), Positives = 158/261 (60%), Gaps = 2/261 (0%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVED--NSPHVARIAIRGQIEDSQELIERIE 58
           +   LK  +T   ++  + L +  +  +S V +  ++ ++A++ I G+IE ++E+ + ++
Sbjct: 12  LNSKLKLWRTLTFLVVFLMLILSNYVDTSSVSNFLDNEYIAKVNIEGKIETNEEMDKLLK 71

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118
           +I++D     LI++++SPGG+    E +++ I+ V   KPV+  +++ AAS GY+ + A+
Sbjct: 72  KIAKDTHIKGLILNINSPGGAVTGSEILYQNIRNVSKYKPVVALLNDFAASGGYMTAIAA 131

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I+A  T++ GSIGVL QY  V     KLG+++KS+KSS +KA  SPF E+  +  Q +
Sbjct: 132 DYIIARHTTITGSIGVLMQYFGVDQLAKKLGITLKSIKSSQLKAATSPFEELTQEKEQSV 191

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           + +++ SY++FV +V+E R +  ++ L ++DG I+TG+EA  +GL+D +GG++E  +   
Sbjct: 192 RHIINDSYNYFVDIVAERRKMTKEQVLAIADGSIYTGSEALAIGLVDQIGGEDEALKWFS 251

Query: 239 ALGVDQSIRKIKDWNPPKNYW 259
           +  V             K+  
Sbjct: 252 SQNVKTQKINTLPIREHKSVL 272


>gi|15641996|ref|NP_231628.1| protease IV [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121730094|ref|ZP_01682498.1| protease IV [Vibrio cholerae V52]
 gi|147673256|ref|YP_001217520.1| protease IV [Vibrio cholerae O395]
 gi|153217088|ref|ZP_01950852.1| protease IV [Vibrio cholerae 1587]
 gi|153820012|ref|ZP_01972679.1| protease IV [Vibrio cholerae NCTC 8457]
 gi|153823324|ref|ZP_01975991.1| protease IV [Vibrio cholerae B33]
 gi|227082121|ref|YP_002810672.1| protease IV [Vibrio cholerae M66-2]
 gi|229507917|ref|ZP_04397422.1| protease IV [Vibrio cholerae BX 330286]
 gi|229511848|ref|ZP_04401327.1| protease IV [Vibrio cholerae B33]
 gi|229518984|ref|ZP_04408427.1| protease IV [Vibrio cholerae RC9]
 gi|229607462|ref|YP_002878110.1| protease IV [Vibrio cholerae MJ-1236]
 gi|254849080|ref|ZP_05238430.1| protease IV [Vibrio cholerae MO10]
 gi|255745257|ref|ZP_05419206.1| protease IV [Vibrio cholera CIRS 101]
 gi|262155982|ref|ZP_06029102.1| protease IV [Vibrio cholerae INDRE 91/1]
 gi|262167944|ref|ZP_06035644.1| protease IV [Vibrio cholerae RC27]
 gi|298497974|ref|ZP_07007781.1| signal peptide peptidase SppA, 67K type [Vibrio cholerae MAK 757]
 gi|9656536|gb|AAF95142.1| protease IV [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121628165|gb|EAX60694.1| protease IV [Vibrio cholerae V52]
 gi|124113890|gb|EAY32710.1| protease IV [Vibrio cholerae 1587]
 gi|126509448|gb|EAZ72042.1| protease IV [Vibrio cholerae NCTC 8457]
 gi|126519158|gb|EAZ76381.1| protease IV [Vibrio cholerae B33]
 gi|146315139|gb|ABQ19678.1| protease IV [Vibrio cholerae O395]
 gi|227010009|gb|ACP06221.1| protease IV [Vibrio cholerae M66-2]
 gi|227013891|gb|ACP10101.1| protease IV [Vibrio cholerae O395]
 gi|229343673|gb|EEO08648.1| protease IV [Vibrio cholerae RC9]
 gi|229351813|gb|EEO16754.1| protease IV [Vibrio cholerae B33]
 gi|229355422|gb|EEO20343.1| protease IV [Vibrio cholerae BX 330286]
 gi|229370117|gb|ACQ60540.1| protease IV [Vibrio cholerae MJ-1236]
 gi|254844785|gb|EET23199.1| protease IV [Vibrio cholerae MO10]
 gi|255737087|gb|EET92483.1| protease IV [Vibrio cholera CIRS 101]
 gi|262023671|gb|EEY42372.1| protease IV [Vibrio cholerae RC27]
 gi|262030160|gb|EEY48804.1| protease IV [Vibrio cholerae INDRE 91/1]
 gi|297542307|gb|EFH78357.1| signal peptide peptidase SppA, 67K type [Vibrio cholerae MAK 757]
          Length = 616

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 14/287 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           +       +       ++  +A +   G I D            +   +     D +  A
Sbjct: 307 IGYYEYKTTIKPTTLTDANDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   I+ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +  L+ LG+    V ++P  +     + +   A   +Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGLTTGLTQGAKDAIQLGIEHGYQ 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F+ LV+E R +       L+ GR+WT  +A+ +GL+D +G  ++       L      +
Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           +  +++   P   +  DL      SL  D +  +    +Q L   W 
Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSTLLPKSLQPLAVEWQ 591



 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 99/284 (34%), Gaps = 37/284 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51
           + F+   +     +LS+  +  +Y    + +       A  + + G I +          
Sbjct: 19  ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            +++E +     D++ T L+++    P  +      I +AI + 
Sbjct: 79  FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-------- 203
             +    K+   PF   +++  A +     +   +  +V  V+ +R I            
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEQF 258

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
              L +      A +KKVGL+D +  +++V Q+L          
Sbjct: 259 VAQLKEVNGDLAALSKKVGLVDELATRQQVRQTLAETFGSDGKD 302


>gi|313637993|gb|EFS03284.1| putative signal peptide peptidase SppA [Listeria seeligeri FSL
           S4-171]
          Length = 337

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 139/299 (46%), Gaps = 25/299 (8%)

Query: 18  VTLTVVYFSWSSH------VEDNSPHVARIAIRGQIEDSQE--------------LIERI 57
           + +    F+ ++        +     +A +++ G I+D+ E               ++++
Sbjct: 37  IAVIDTLFAGTNELTETVIEKAGPSKIAVLSVDGTIQDTGESTSLLGSTGYNHSFFMDQL 96

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLIS 115
           E++  D+S   +++ ++SPGG       I   I +++  +  P    +  MAAS GY IS
Sbjct: 97  EQVRDDESIKGVLLYVNSPGGGVMESAQIRDKILQIQKERSIPFYVSMGSMAASGGYYIS 156

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
             ++ I A++ +L GS+GV+ Q       + KLG++  ++KS   K   S    +     
Sbjct: 157 APADKIFASKETLTGSLGVIMQGYDYSELMKKLGITDNTIKSGAHKDIMSATRPMTEDEK 216

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           ++MQ ++D SY+ FV++V+  R +  ++   ++DGRI+ G +AK+ GLID  G QE+   
Sbjct: 217 KIMQSMIDDSYNEFVQVVASGRGMSEEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALA 276

Query: 236 SLYALGVDQSIRKIKDWNPPK-NYWFCDL--KNLSISSLLEDTIPLMKQTKVQGLWAVW 291
           +L       +   I+   P   +  F     K    S+ +   I L    +   +  ++
Sbjct: 277 ALKKDEKLSNATVIQYDEPTSFSSLFSVAAQKMSGQSADISQLIKLTGTLQAPRMMYLY 335


>gi|126438593|ref|YP_001059819.1| peptidase, U7 family protein [Burkholderia pseudomallei 668]
 gi|126218086|gb|ABN81592.1| peptidase, U7 family protein [Burkholderia pseudomallei 668]
          Length = 333

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 125/289 (43%), Gaps = 17/289 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           +I  R+  L+++      F   S       +  H A + I G+I      +++++   ++
Sbjct: 48  RIFFRFAFLAVLGALAFAFLSVSGDGSKLASGRHTAVVTIDGEIAASTNANAEDINTALD 107

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115
               D     +++ ++SPGGS      ++  I++++ +   KP+   V +M AS GY I+
Sbjct: 108 SAFEDSGTVGVVLKINSPGGSPVQAGIVYDEIRRLRKKYPAKPLYVVVSDMCASGGYYIA 167

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         + KLGV  +   S   K    PFS   PK  
Sbjct: 168 AAADKIYVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFFDPFSPETPKMD 227

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q+++D  +  F++ V + R     ++  +  G  WTGA++ ++GL D  G  + V +
Sbjct: 228 AHAQEMLDEIHAQFIKAVKDGRGARLHESPDIFSGLFWTGAKSIELGLADDYGTTDTVAR 287

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
            +           + D+   ++      +    +         +   ++
Sbjct: 288 DVLK------APDLVDYTVKESLTDRVARRFGAALGKAALKAAVAGGEL 330


>gi|163753142|ref|ZP_02160266.1| protease IV [Kordia algicida OT-1]
 gi|161326874|gb|EDP98199.1| protease IV [Kordia algicida OT-1]
          Length = 589

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/251 (25%), Positives = 125/251 (49%), Gaps = 10/251 (3%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGG 78
              V+ +   +A I  +GQI  ++          + + ++    D++  A+++ ++SPGG
Sbjct: 296 KPTVKKSDEKIAVIYAQGQIMYAEGNENFIGQGVINKALKEAREDENVKAIVLRVNSPGG 355

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           SA A E I+R I+  K  KPVI  + ++AAS GY I+C ++ I A   ++ GSIGV    
Sbjct: 356 SALASELIWREIELTKKEKPVIVSMGDLAASGGYYIACNADKIYAEPNTITGSIGVFGTI 415

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P +    + LG++ + V ++    + S F  ++ +   ++++ ++  Y  F + V++ R 
Sbjct: 416 PNMHKLAEDLGINAEQVGTNKNAVDYSIFEPMSDEQRALIKEGIEDIYDLFTQRVADGRG 475

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           +  +    +  GR+WTG +A K+GL+D +GG +   Q+           KI++    +  
Sbjct: 476 MTQEAVDEIGQGRVWTGNDAIKIGLVDEIGGLDMALQAAADAADMTE-YKIEELPVYEKD 534

Query: 259 WFCDLKNLSIS 269
               L   +  
Sbjct: 535 LESILNQFTGG 545



 Score = 89.3 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 79/209 (37%), Gaps = 6/209 (2%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
            +I+ I     DD    + +  ++        +A+  A+   K     I    +  +   
Sbjct: 82  NIIDAIHYAKDDDKIKGISIKNNTLQAGMAQTKALRDALLAFKESGKFIVSYGDYYSQKD 141

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSE 169
           Y ++  ++ +       +   G+  +  Y K F +K G+ ++ ++    K+  E     E
Sbjct: 142 YYLNSVADTVYLNPVGGLDFKGLSMERMYYKDFQEKYGIKMEVIRHGKYKSAVEGYLNQE 201

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGAEAKKVGLIDVVG 228
           ++    + +   + S +      ++ESRN+  D    L+D     T   A  V LID +G
Sbjct: 202 MSEANREQISVFLQSIWDEMRTEIAESRNLSSDHLNTLADELAGRTATRALNVKLIDKIG 261

Query: 229 GQEEV---WQSLYALGVDQSIRKIKDWNP 254
            ++E     Q       D +   I D+  
Sbjct: 262 YEDEYEAGIQYAMGENSDINRVNIYDYAE 290


>gi|121595589|ref|YP_987485.1| peptidase S49 [Acidovorax sp. JS42]
 gi|120607669|gb|ABM43409.1| peptidase S49 [Acidovorax sp. JS42]
          Length = 347

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 122/290 (42%), Gaps = 14/290 (4%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIER 59
               +  +V+L+   +        +    ++PH A + ++G+I       ++ ++  +  
Sbjct: 64  RNFWRLAWVLLAGAVIWAALSREMTATSKSTPHTAVVDVKGEIAAGAEASAEFVVAAMRS 123

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCA 117
              D  + A+++ ++SPGGS      I   I ++K +  KPV   V E  ASA Y I+ A
Sbjct: 124 AFEDAGSQAVVLLINSPGGSPVQAGIINDEIVRLKAKYNKPVYAVVEETCASAAYYIAAA 183

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           ++ I   + S+VGSIGVL         ++KLGV  + + +   K    PFS         
Sbjct: 184 ADGIFVDKASIVGSIGVLMDGFGFTGAMEKLGVERRLLTAGENKGFLDPFSPQTETQRAY 243

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
            Q ++D  +  F+ +V + R      T     G  WTG +A ++GL D +G  + V + +
Sbjct: 244 AQAMLDQIHQQFIGVVKQGRGDRLKVTPETFSGLFWTGQQAVEMGLADQLGNLDYVAREV 303

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
                      + D+    N      K    +  +   +  +   ++  L
Sbjct: 304 VK------AEDVIDYTRRDNVAERLAKKFGAAVGMG-AVKGLAALQLPQL 346


>gi|51473706|ref|YP_067463.1| protease IV [Rickettsia typhi str. Wilmington]
 gi|51460018|gb|AAU03981.1| probable protease IV [Rickettsia typhi str. Wilmington]
          Length = 304

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/261 (26%), Positives = 138/261 (52%), Gaps = 4/261 (1%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
            +  N  ++A + I G I + ++  +++++I  +    ALIV+++SPGG+    E I+  
Sbjct: 47  SINSNEDYIASVLIDGIILEDEKRDKKLKKIIDNSHIKALIVNVNSPGGTVVGSEKIYNI 106

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           ++K+  +KPV+  +  MA S GYLIS   + I++   ++ GSIGV+ Q   V     KLG
Sbjct: 107 LRKISAKKPVVVVMGTMATSGGYLISLGGDYIISHNGTITGSIGVILQTAEVTELAQKLG 166

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +   + KS   KA P+P  ++  +    + + ++ +Y +F+ LVSE R++P ++   L+D
Sbjct: 167 IKFNNFKSGAFKAVPNPTEKLTEEVRVAVMENIEDTYKFFIELVSERRSLPIEEVHKLAD 226

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           GR+++G +A K+ L+D +G ++   + L  +        +KD+         ++     +
Sbjct: 227 GRVYSGRQAFKLRLVDTIGSEDTALKWLQEIKKIDINLTVKDYQLKPKSTLIEIMFEDFT 286

Query: 270 SLLEDTIPLMKQTKVQGLWAV 290
           SL+        +    G+ ++
Sbjct: 287 SLVL----SFFKNSFNGIKSI 303


>gi|166713751|ref|ZP_02244958.1| protease IV [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 633

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/267 (23%), Positives = 120/267 (44%), Gaps = 11/267 (4%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVS 72
           +          D+ P VA +   G+I            +     + +   D+   A+++ 
Sbjct: 320 LSQLQAQGSPMDSRPQVAVVVATGEISGGEQPAGRIGGESTAALLRQARDDEKVKAVVLR 379

Query: 73  LSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
           + SPGG  +A E I R +  + +  KPV+  + ++AAS GY IS  ++ I A  +++ GS
Sbjct: 380 VDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGS 439

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IG+    P +   LDK+GV    V ++           ++P A Q++Q +++  Y  F  
Sbjct: 440 IGIFGMVPNLTRALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQALINKGYADFTG 499

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIK 250
            V+++R+   D    ++ GR+W+GA+AK+ GL+D  GG  E            +   +++
Sbjct: 500 KVAQARHQSVDAIDKVARGRVWSGAQAKERGLVDAFGGMSEAVADAADRAKLSRGKFRVR 559

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIP 277
               P   +   +   + S +    + 
Sbjct: 560 YVEKPATPFSQFMSGFAGSRMGAWMLS 586



 Score = 68.9 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 97/288 (33%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRGQIEDS------ 50
           M F  + I        L  L +V+    +  +   P        I   G + +       
Sbjct: 21  MNFTRRLIFNLVFFGFLFLLLLVFVVALARGDGTKPLAERTTLVINPEGTLVEQFSADPV 80

Query: 51  ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQ 91
                             ++L+  IE   +D     ++++L     S +A +  +  A+Q
Sbjct: 81  SRSLAKAVGDRSAQEVQLRDLVRVIEAAGKDRKIERVLLNLDKFQPSGFASQREVAAALQ 140

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGV 150
           K++     I    E  +   YL++  +N +       V   G+  ++  + +   DKLGV
Sbjct: 141 KLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGV 200

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
            +   +    K+   P+     +  A +     ++  +  ++  V  +R +   +     
Sbjct: 201 DVHLFRVGEYKSAAEPYILDAASADAREADLFWMNDVWQRYLADVGTARKLSPAQLTAGI 260

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 ++         A +  L+D +  +EEV   L   GV  S   
Sbjct: 261 DTLPEGVAAAGGDLAKFALQQKLVDGLKTREEVDALLVKRGVADSDAD 308


>gi|58617362|ref|YP_196561.1| putative protease IV [Ehrlichia ruminantium str. Gardel]
 gi|58416974|emb|CAI28087.1| Putative Protease IV [Ehrlichia ruminantium str. Gardel]
          Length = 289

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 81/261 (31%), Positives = 158/261 (60%), Gaps = 2/261 (0%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVED--NSPHVARIAIRGQIEDSQELIERIE 58
           +   LK  +T   ++  + L +  +  +S V +  ++ ++A++ I G+IE ++E+ + ++
Sbjct: 12  LNSKLKLWRTLTFLMVFLILILSNYVDTSSVSNFLDNEYIAKVNIEGKIETNEEMDKLLK 71

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118
           +I++D     LI++++SPGG+    E +++ I+ V   KPV+  +++ AAS GY+ + A+
Sbjct: 72  KIAKDTHIKGLILNINSPGGAVTGSEILYQNIRNVSKYKPVVALLNDFAASGGYMTAIAA 131

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I+A  T++ GSIGVL QY  +     KLG+++KS+KSS +KA  SPF E+  +  Q +
Sbjct: 132 DYIIARHTTITGSIGVLMQYFGIDQLAKKLGITLKSIKSSELKAATSPFEELTQEKEQSV 191

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           + +++ SY++FV +V+E R +  ++ L ++DG I+TG+EA  +GL+D +GG++E  +   
Sbjct: 192 RHIINDSYNYFVDIVAERRKMTKEQVLAIADGSIYTGSEALAIGLVDQIGGEDEALKWFS 251

Query: 239 ALGVDQSIRKIKDWNPPKNYW 259
           +  V             K+  
Sbjct: 252 SQNVKTQKINTLPIREHKSVL 272


>gi|189459815|ref|ZP_03008600.1| hypothetical protein BACCOP_00445 [Bacteroides coprocola DSM 17136]
 gi|189433425|gb|EDV02410.1| hypothetical protein BACCOP_00445 [Bacteroides coprocola DSM 17136]
          Length = 588

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 75/269 (27%), Positives = 132/269 (49%), Gaps = 13/269 (4%)

Query: 30  HVEDNSPHVARIAIRGQI----------EDSQELIERIERISRDDSATALIVSLSSPGGS 79
             + +   +A     G+I           +S+++I+ + ++  D+S  A+++ ++SPGGS
Sbjct: 299 PKDKSGNVIAVYYAYGEIDGDESADGEGINSEKVIKDLRKLREDESVKAVVLRVNSPGGS 358

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           AY  E I+R +  +K  KPVI  + + AAS GY ISCA++ IVA  T+L GSIG+    P
Sbjct: 359 AYGSEQIWREVSLLKQEKPVIVSMGDYAASGGYYISCAADWIVAEPTTLTGSIGIFGLVP 418

Query: 140 YVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             +  L DKLG++   VK++ +          N +   +MQ +V+  Y  F +  ++ R 
Sbjct: 419 NAEGLLKDKLGLNFDVVKTNELADLGDLTRPFNEEEKALMQGMVNKGYELFTKRCADGRK 478

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           +  +    +++GR+WTG  AK + L+D +GG +E  +   +    +    +    P K  
Sbjct: 479 MNIEDIKKIAEGRVWTGEMAKDLKLVDELGGLDEAVEVAASHAKIERYTLVSY--PEKED 536

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +   L N   S  +   +         GL
Sbjct: 537 FLTSLLNTRPSRYISSRMQENFGEYYNGL 565



 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 100/262 (38%), Gaps = 24/262 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPH-VARIAIRGQIE-------------------DSQ 51
           + +L +++L  +  S S          V  + ++G +                       
Sbjct: 22  FTILGIISLAGMVASTSGTETIVKDRSVFVLELKGSVMERYQENPIMQFLGEDYATYGLD 81

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
           +++  I +   +D    + +   +      + +AI RA+   K     I       +   
Sbjct: 82  DILTSIRKAKENDKIKGIYIDAGAFACQTASMQAIRRALVDFKESGKFIVAYAGAYSQGT 141

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SE 169
           Y I+  ++ ++A  +  +G  G+  Q  ++K  LDK+GV ++  +    K+   P+  +E
Sbjct: 142 YYIASVADKVIANPSGSIGWHGLSAQTMFLKGLLDKVGVEMQVFRVGTYKSAVEPYIATE 201

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL--SDGRIWTGAEAKKVGLIDVV 227
           ++P   +  Q  + S +   +  VSESR I  D    L   +  +         GL D +
Sbjct: 202 MSPANREQTQAFIGSIWQQILNEVSESRKISVDSLNALASRNMDLQPAELYLSTGLADTL 261

Query: 228 GGQEEVWQSLYALGVDQSIRKI 249
             ++EV   L  L   +   K+
Sbjct: 262 MYKDEVLAYLKQLTDCKEDEKL 283


>gi|256424808|ref|YP_003125461.1| signal peptide peptidase SppA, 67K type [Chitinophaga pinensis DSM
           2588]
 gi|256039716|gb|ACU63260.1| signal peptide peptidase SppA, 67K type [Chitinophaga pinensis DSM
           2588]
          Length = 587

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 135/299 (45%), Gaps = 18/299 (6%)

Query: 4   VLKKIKTRYVM-----LSLVTLTVVYFSWS-SHVEDNSPHVARIAIRGQIEDSQE----- 52
           V+ +IK+R  +     ++ V+++    +   +  +     VA I   G I          
Sbjct: 264 VMDEIKSRLGLKGSDDVNFVSVSKYMDAVDLTENKGADNKVAIIYAEGNIVGGDSEKDVT 323

Query: 53  -----LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
                 I+ I    +D    A++  ++SPGGSA A E+I+R +   K  KPV+  + + A
Sbjct: 324 ISSGHFIKLIREARQDKDVKAIVFRVNSPGGSALASESIWRELVLAKKSKPVVVSMGDYA 383

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK-LGVSIKSVKSSPMKAEPSP 166
           AS GY ISC ++ I A   +L GSIGV    P ++ F    LGV+   VK++      + 
Sbjct: 384 ASGGYYISCMADSIFAQPNTLTGSIGVFAVLPNLQGFFKNKLGVTFDGVKTAQYADLGNT 443

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
              +     + +Q+ VDS Y  F   V E R +       ++ GR+W+G +AK++GL+D 
Sbjct: 444 SRPLTDIEKKFIQNSVDSIYSTFKSRVVEGRKLSGAVVDSIAQGRVWSGIQAKQLGLVDR 503

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           +GG  E       L    S  +++++          +K+   S+ +E  +      +  
Sbjct: 504 IGGINEAIACAAKLAKVSS-YRLREYPESDASLSRMMKSFGASAHVEAAVKNELGEQYD 561



 Score = 89.3 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 83/280 (29%), Gaps = 31/280 (11%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE------------ 48
           M    K      +   ++ +  V           SP V  ++    +             
Sbjct: 1   MRSFFKIFFATLLAFVVILILGVILLAGVIGSAISPEVVTLSPNSVLVLETSQQYNEQKV 60

Query: 49  ----------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
                              ++I  I+    DD    + +            E +  A+ +
Sbjct: 61  SNPVNALLRQEPKSVPGLNDMIRLIKHAETDDDIKGIYLKAEGNANGFATNEEVRNALLR 120

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            K     +    E+     Y ++  ++ +       V   G   Q  ++K  L+KL +  
Sbjct: 121 FKQSGKFVFAYGEVMDQKSYYMASLADRVYVHPKGGVEFSGFFTQLTFLKGTLEKLEIQP 180

Query: 153 KSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD- 209
           +       K+   P   +E+           +   Y  F++ +  +R I        ++ 
Sbjct: 181 QIFYDGRFKSATEPLRETEMTLANRIQTSAYLGDLYGNFLKNIGTARKIDTASLHRYANE 240

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           G I   A+A K  L+D +   ++V   + +    +    +
Sbjct: 241 GLIQEAADALKYKLVDGLKYNDQVMDEIKSRLGLKGSDDV 280


>gi|218705264|ref|YP_002412783.1| protease 4 [Escherichia coli UMN026]
 gi|218432361|emb|CAR13251.1| protease IV (signal peptide peptidase) [Escherichia coli UMN026]
          Length = 618

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARSAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|190576019|ref|YP_001973864.1| putative protease IV [Stenotrophomonas maltophilia K279a]
 gi|190013941|emb|CAQ47581.1| putative protease IV [Stenotrophomonas maltophilia K279a]
          Length = 640

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 116/257 (45%), Gaps = 12/257 (4%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           DN P VA +   G+I            +     +     D++  A+++ + SPGG  +A 
Sbjct: 338 DNRPQVAVVVAAGEISGGDLPAGRIGGESTSALLRAARDDENVKAVVLRVDSPGGEVFAS 397

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I R +  ++   KPV+  + ++AAS GY IS  ++ I A  +++ GSIG+    P   
Sbjct: 398 EQIRREVVALQAAGKPVVVSMGDLAASGGYWISMNADRIYADPSTITGSIGIFGMVPNFS 457

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LDK+GV    V ++           ++P   Q++Q V++  Y  F   V+++R  P +
Sbjct: 458 RALDKIGVHTDGVGTTRFAGAFDVTRPMDPAVGQVIQSVINKGYADFTGRVADARKKPVE 517

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG--VDQSIRKIKDWNPPKNYWF 260
               ++ GR+W+GA+AK+ GL+D  GG ++      +          +++        + 
Sbjct: 518 AVDEVARGRVWSGAQAKERGLVDAFGGLKDAVADAASRAKLGKADAYRVRYIEKAATPFA 577

Query: 261 CDLKNLSISSLLEDTIP 277
             +   + S      + 
Sbjct: 578 QFVSGFAGSRAGAWMLS 594



 Score = 64.6 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 76/210 (36%), Gaps = 12/210 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAAS 109
           ++L+  IE    D     +++ L     S +A    +  A+Q ++     +    E    
Sbjct: 106 RDLLRVIESAKEDKKIERVVLELDKLQPSGFASLREVATALQDLRASGKQLVAYSESMGQ 165

Query: 110 AGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167
           + YL++  ++ +       V   G+  ++  +     DKLGV +   K    K+   P+ 
Sbjct: 166 SQYLLAAQADEVYLDPMGSVVLEGLGRYRQYFRTGLQDKLGVDVHLFKVGEYKSAAEPYV 225

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV--------LSDGRIWTGAEA 218
               +P + +     ++  +  ++  ++++R +   +           ++         A
Sbjct: 226 LDAASPASKEADLFWMNDVWQRYLADIAKARRLDPAQLAAGIDTLPEGIAAAGGDLAKFA 285

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            +  L+  +  +EE    +   GV      
Sbjct: 286 LQQKLVTALKTREEFEDLMIERGVADDDAD 315


>gi|170079132|ref|YP_001735770.1| signal peptide peptidase SppA, 36K type [Synechococcus sp. PCC
           7002]
 gi|169886801|gb|ACB00515.1| signal peptide peptidase SppA, 36K type [Synechococcus sp. PCC
           7002]
          Length = 272

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 74/268 (27%), Positives = 137/268 (51%), Gaps = 8/268 (2%)

Query: 32  EDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
                 VARI I G I     + +++ +E +       AL++ + SPGG+    + I+ A
Sbjct: 7   PKTRKQVARIEITGAIAADTRKRVLKALEEVEE-KKYPALLLRIDSPGGTVGDSQEIYYA 65

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           ++K++ +  ++     ++AS G  I   +  IVA   ++ GSIGV+ +   ++  L+K+G
Sbjct: 66  LKKLQEKTKIVASFGNISASGGVYIGMGAQHIVANPGTITGSIGVILRGNNLERLLEKVG 125

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           VS K +KS P K   S   E+      ++Q+++D SY  FV+ V+E+RN+  +     +D
Sbjct: 126 VSFKVIKSGPYKDILSFDRELTEAEENILQEMIDVSYGQFVKTVAEARNLDVETVKTFAD 185

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLKNLSI 268
           GRI+TG +A+++G++D +G +E+       L   D    + +    PK      L    +
Sbjct: 186 GRIFTGEQAQELGVVDRLGTEEDARIWAAKLAGLDPDKAECRTIEEPKPLITRLLSRNQL 245

Query: 269 SSLLEDTIPLMK---QTKVQGLWAVWNP 293
           SS + + +  ++    T  Q LW ++ P
Sbjct: 246 SSPVGNALNWVEFELATAGQPLW-LYRP 272


>gi|188574921|ref|YP_001911850.1| signal peptide peptidase SppA, 67K type [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188519373|gb|ACD57318.1| signal peptide peptidase SppA, 67K type [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 629

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/267 (23%), Positives = 120/267 (44%), Gaps = 11/267 (4%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVS 72
           +          D+ P VA +   G+I            +     + +   D+   A+++ 
Sbjct: 316 LSQLQAQDSPMDSRPQVAVVVATGEISGGEQPAGRIGGESTAALLRQARDDEKVKAVVLR 375

Query: 73  LSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
           + SPGG  +A E I R +  + +  KPV+  + ++AAS GY IS  ++ I A  +++ GS
Sbjct: 376 VDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGS 435

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IG+    P +   LDK+GV    V ++           ++P A Q++Q +++  Y  F  
Sbjct: 436 IGIFGMVPNLTRALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQALINKGYADFTG 495

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIK 250
            V+++R+   D    ++ GR+W+GA+AK+ GL+D  GG  E            +   +++
Sbjct: 496 KVAQARHQSVDAIDKVARGRVWSGAQAKERGLVDAFGGMSEAVADAADRAKLSRGKFRVR 555

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIP 277
               P   +   +   + S +    + 
Sbjct: 556 YVEKPATPFSQFMNGFAGSRMGAWMLS 582



 Score = 70.8 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 98/288 (34%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRGQIEDS------ 50
           M F  + I        L  L +V+    +  +   P        I   G + +       
Sbjct: 17  MNFTRRLIFNLVFFGFLFMLLLVFVVALARGDGTKPLAERTTLVINPEGTLVEQFSADPV 76

Query: 51  ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQ 91
                             ++L+  IE   +D     ++++L     S +A +  +  A+Q
Sbjct: 77  SRSLAKAVGDRSAQEVQLRDLVRVIEAAGKDRKIERVLLNLDKFQPSGFASQREVAAALQ 136

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGV 150
           K++     I    E  +   YL++  +N +       V   G+  ++  + +   DKLGV
Sbjct: 137 KLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGV 196

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
            +   +    K+   P+     +  A +     ++  +  ++  V  +R +   +     
Sbjct: 197 DVHLFRVGEYKSAAEPYILDAASADAREADLFWMNDVWQRYLADVGTARKLSPAQLTAGI 256

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 ++         A +  L+D +  +EEV   L   GV  S  +
Sbjct: 257 DTLPEGVAAAGGDLAKFALQQKLVDGLKTREEVDALLVKRGVADSDAE 304


>gi|121598392|ref|YP_993790.1| peptidase, U7 family protein [Burkholderia mallei SAVP1]
 gi|251767265|ref|ZP_04820039.1| putative signal peptide peptidase SppA, 36K type [Burkholderia
           mallei PRL-20]
 gi|121227202|gb|ABM49720.1| peptidase, U7 family protein [Burkholderia mallei SAVP1]
 gi|243063309|gb|EES45495.1| putative signal peptide peptidase SppA, 36K type [Burkholderia
           mallei PRL-20]
          Length = 333

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 126/289 (43%), Gaps = 17/289 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           +I  R+  L+++      F   S       +  H A + I G+I      +++++   ++
Sbjct: 48  RIFFRFAFLAVLGALAFAFLSVSGDGGKLASGRHTAVVTIDGEIAASTNANAEDINTALD 107

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115
               D     +++ ++SPGGS      ++  I++++ +   KP+   V +M AS GY I+
Sbjct: 108 SAFEDSGTVGVVLKINSPGGSPVQAGIVYDEIRRLRKKYPAKPLYVVVSDMCASGGYYIA 167

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         + KLGV  +   S   K    PFS   PK  
Sbjct: 168 AAADKIYVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFFDPFSPETPKMD 227

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q+++D  +  F++ V + R     ++  +  G  WTGA++ ++GL D  G  + V +
Sbjct: 228 AHAQEMLDEIHAQFIKAVKDGRGARLHESPDIFSGLFWTGAKSIELGLADDYGTTDTVAR 287

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
            +        +  + D+   ++      +    +         +   ++
Sbjct: 288 DVLK------VPDLVDYTVKESLTDRVARRFGAALGKAALKAAVAGGEL 330


>gi|237813214|ref|YP_002897665.1| peptidase, U7 family protein [Burkholderia pseudomallei MSHR346]
 gi|237504696|gb|ACQ97014.1| peptidase, U7 family protein [Burkholderia pseudomallei MSHR346]
          Length = 305

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 125/289 (43%), Gaps = 17/289 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           +I  R+  L+++      F   S       +  H A + I G+I      +++++   ++
Sbjct: 20  RIFFRFAFLAVLGALAFAFLSVSGDGSKLASGRHTAVVTIDGEIAASTNANAEDINTALD 79

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115
               D     +++ ++SPGGS      ++  I++++ +   KP+   V +M AS GY I+
Sbjct: 80  SAFEDSGTVGVVLKINSPGGSPVQAGIVYDEIRRLRKKYPAKPLYVVVSDMCASGGYYIA 139

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         + KLGV  +   S   K    PFS   PK  
Sbjct: 140 AAADKIYVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFFDPFSPETPKMD 199

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q+++D  +  F++ V + R     ++  +  G  WTGA++ ++GL D  G  + V +
Sbjct: 200 AHAQEMLDEIHAQFIKAVKDGRGARLHESPDIFSGLFWTGAKSIELGLADDYGTTDTVAR 259

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
            +           + D+   ++      +    +         +   ++
Sbjct: 260 DVLK------APDLVDYTVKESLTDRVARRFGAALGKAALKAAVAGGEL 302


>gi|270159568|ref|ZP_06188224.1| putative peptidase [Legionella longbeachae D-4968]
 gi|289165636|ref|YP_003455774.1| signal peptide peptidase [Legionella longbeachae NSW150]
 gi|269987907|gb|EEZ94162.1| putative peptidase [Legionella longbeachae D-4968]
 gi|288858809|emb|CBJ12723.1| signal peptide peptidase [Legionella longbeachae NSW150]
          Length = 318

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 134/291 (46%), Gaps = 21/291 (7%)

Query: 6   KKIKT--RYVMLSLVTLTVVYFSWSSHVE---DNSPHVARIAIRGQIED-----SQELIE 55
           ++ K   R + L ++   V  FS S++ E   +  PHV  + I G++ D     S +  +
Sbjct: 32  RRWKWCMRVIYLLIIAYIVYQFSASTNEEGGTNTKPHVGIVDINGEMADAKPANSDDFAK 91

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM---AASAGY 112
            ++   ++    ALIV ++SPGGS    E ++  I+  + + P I          ASA Y
Sbjct: 92  GLDAAYKNSGLKALIVRINSPGGSPVQAEYMYNTIKYYQKKHPDIKIYSVCVDACASAAY 151

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            ++ A++ I A+  S+VGSIGVL+    V   ++K+GVS +   S   K    PFS    
Sbjct: 152 YVAVATDAIYASPASMVGSIGVLYNGFGVVDLMNKIGVSRRLQTSGVNKGFLDPFSPQTD 211

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
              Q +Q ++D  +  F+  V E R            G  WTG +A  +GLID      +
Sbjct: 212 FEKQKLQTMLDIVHQQFINRVKEGRGSRLHIDDETFSGLFWTGEQALTMGLIDGYASSGQ 271

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
           + + +       ++ ++ D+   +N +    KN+  +  + D +PL    +
Sbjct: 272 LAREII------NVPEVIDYTHKQNLFDRVTKNIGTA--MADELPLSFGAR 314


>gi|262375594|ref|ZP_06068827.1| signal peptide peptidase SppA, 36K type [Acinetobacter lwoffii
           SH145]
 gi|262309848|gb|EEY90978.1| signal peptide peptidase SppA, 36K type [Acinetobacter lwoffii
           SH145]
          Length = 340

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 134/295 (45%), Gaps = 16/295 (5%)

Query: 4   VLKKIKTRYVMLSLVTLT-VVYFSWSSHVEDNSPHVARIAIRGQI------EDSQELIER 56
             K +   Y+++ ++ L        S        H+A + I G I       +S   I+ 
Sbjct: 49  FFKFLTFAYLLVVILALGKSCSSVSSDASAAAGSHIAVVDIVGTIAADKQSVNSSNTIKS 108

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYL 113
           +++   +  + A++++++SPGGS    + I++ IQ +K +   K +   + +  AS  Y 
Sbjct: 109 LKKAFENKQSKAVVLNINSPGGSPVQSDEIWQEIQYLKKQYPGKKLYAVIGDTGASGAYY 168

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           I+ A++ I+   +SLVGSIGV+     V   L KLGV  +++ S   KA  S    V+P 
Sbjct: 169 IASAADEIIVNPSSLVGSIGVIMPNYGVTNLLQKLGVEDRTMTSGENKALLSMTQPVDPA 228

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
               +Q V+D+ +  F+  V + R          +  G  WTG +A K+G+ D +G    
Sbjct: 229 QKAHVQGVLDNVHGHFINAVKQGRGAKLKSNDPAIFSGLFWTGDQAVKLGIADRIGSLNT 288

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYW--FCDLKNLSISSLLEDTIPLMKQTKVQ 285
           + + L     ++++    +++P ++            I+S +   +     T +Q
Sbjct: 289 LKRELKT---EKALNYTIEYSPFESVLGRMGSSIGDGIASSVAQKLQSENSTTLQ 340


>gi|300776240|ref|ZP_07086098.1| signal peptide peptidase SppA [Chryseobacterium gleum ATCC 35910]
 gi|300501750|gb|EFK32890.1| signal peptide peptidase SppA [Chryseobacterium gleum ATCC 35910]
          Length = 585

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 126/267 (47%), Gaps = 10/267 (3%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL--------IERIERISRDDSATAL 69
           ++L     S++   +     VA +   G I +  E         ++ I+++  DD   A+
Sbjct: 285 ISLASYISSYADDDKSGE-KVAVLYASGSINNGDEYNDIHSEKYVKYIKKLQEDDKVKAV 343

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           +  ++SPGGSA A + I   +Q++K +KP+I    + AAS GY ++ A++ I +   +L 
Sbjct: 344 VFRINSPGGSANASDEILFELQQLKKKKPLIVSFGDYAASGGYYVAMAADKIYSEPNTLT 403

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV    PY K    K G+    V ++      S  + V P  V MM   V+ +Y  F
Sbjct: 404 GSIGVFGVMPYYKDIAAKNGIRADIVATNANSMYYSGLNGVTPYGVNMMTRSVEGTYKRF 463

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V  V+++R   +++   +  GR+W+G  AK++GL+D +G   +  +            ++
Sbjct: 464 VHFVTQNRKKTFEQIDNVGGGRVWSGVRAKEIGLVDELGTLTDAVKFAAQKAGL-KSYQV 522

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTI 276
             +    + +    K+L+   +    I
Sbjct: 523 DAFPKRMSPFEQIFKDLNEEDVSARII 549



 Score = 90.4 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 91/267 (34%), Gaps = 23/267 (8%)

Query: 10  TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------------ 51
             + +  ++ L          V      V  I ++  I DS                   
Sbjct: 20  ALFFIFFIMMLVFSAMGNDKSVAVKKNSVLTINLKTNIIDSPTEEEMGLFGIGAQNKSIL 79

Query: 52  --ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
             + +E I +   DD+   + +            + +  AI+  K     +       + 
Sbjct: 80  IYDAVEAINKAKTDDNIKGISIEADDLNAGLTQIDDLRNAIEDFKKSGKFVYAYGNGVSQ 139

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
           + Y +   ++        ++   G+  +  + K F DK G+ I+ ++    K+   PF  
Sbjct: 140 SAYYLGSVADKYYLHPAGMIELKGLSTEVTFFKDFADKYGIGIEVIRHGKFKSAVEPFLR 199

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGAEAKKVGLIDV 226
           ++++P+  + +  +++  +      ++ SR I   +   ++D        ++ +  L D 
Sbjct: 200 NDISPENKEQLSTLLNDLWKNTSNKMAASRKIDTAQFRTITDSLYGMIPEQSLQYKLADK 259

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWN 253
           +  + E    + A    +   K+   +
Sbjct: 260 LMQKSEYENLIRAKLNVKEKEKLNKIS 286


>gi|67924912|ref|ZP_00518304.1| Peptidase S49, SppA [Crocosphaera watsonii WH 8501]
 gi|67853246|gb|EAM48613.1| Peptidase S49, SppA [Crocosphaera watsonii WH 8501]
          Length = 272

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 74/266 (27%), Positives = 136/266 (51%), Gaps = 8/266 (3%)

Query: 34  NSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
            S  +ARI I G I     + +++ ++ +       AL++ + SPGG+    + I+ A++
Sbjct: 9   PSKQIARIEITGAIASETRKYVLDALKTVKE-KKFPALLLRIDSPGGTVGDSQEIYEALR 67

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           ++++   ++     ++AS G  I   +  I+A   ++ GSIGV+ +   ++  LDK+GVS
Sbjct: 68  RLQDEVKIVASFGNISASGGVYIGMGAQHIMANPGTITGSIGVILRGNNLERLLDKVGVS 127

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
            K +KS P K   +   E+  +   ++Q+++D SY  FV  V++ RN+  DK    +DGR
Sbjct: 128 FKVIKSGPYKDILAFDRELTDEEQHILQEMIDVSYQQFVTTVAQGRNLDVDKVKTFADGR 187

Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI-KDWNPPKNYWFCDLKNLSISS 270
           I+TG +A ++GL+D +G +E+       L      +    D + PK      L      S
Sbjct: 188 IFTGQQALELGLVDRLGTEEDARLWAAELAGLNPDKATCYDLDEPKPLLSRVLSRNQSKS 247

Query: 271 LLEDTIPLMK---QTKVQGLWAVWNP 293
            L  T+  ++   +T  Q LW ++ P
Sbjct: 248 KLRTTMDWLEFELKTNGQPLW-LYRP 272


>gi|290968387|ref|ZP_06559927.1| signal peptide peptidase SppA, 36K type [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781574|gb|EFD94162.1| signal peptide peptidase SppA, 36K type [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 315

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 136/283 (48%), Gaps = 19/283 (6%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSP---HVARIAIRGQIEDSQ-------------ELIE 55
            +++ ++T+   +       + +      +A I + G I                  L++
Sbjct: 14  LLVICVITIMAAWLHVREPYDGSGKRGKKIALITVSGPITGGDGQGFWNTGGATAPSLMK 73

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLI 114
           +I + + D    A+++ + SPGGSA A + I R +Q+   N  PV+  + + AAS GY +
Sbjct: 74  QIRQATADAEVGAILLRIDSPGGSAAATQEIARELQRAKDNHIPVVVSMGDTAASGGYWL 133

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           +   + + A  +++ GSIGV   Y   +    KLG+  + +KS   K   SPF  +  + 
Sbjct: 134 AVYGDTLFADPSTITGSIGVYMSYYDARGLSRKLGIREEKIKSGAHKDIFSPFRPMTAEE 193

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
            QM QD+V+  Y+ FV +V++ R++  +    L+DGR++TG+ AK +GL+D +G   +  
Sbjct: 194 KQMTQDMVNEMYNQFVTVVAKERHMRPETVRALADGRVYTGSRAKALGLVDRLGNYYDAL 253

Query: 235 QSLYALGVDQSIRK--IKDWNPPKNYWFCDLKNLSISSLLEDT 275
                L    +  +  +  +   + +      NL++S  +++ 
Sbjct: 254 AYTKKLVHTDADDEDCLVTYEDGQPWQDWVKGNLNLSQAVKNV 296


>gi|229515373|ref|ZP_04404833.1| protease IV [Vibrio cholerae TMA 21]
 gi|229348078|gb|EEO13037.1| protease IV [Vibrio cholerae TMA 21]
          Length = 616

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 14/287 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           +       +       ++  +A +   G I D            +   +     D +  A
Sbjct: 307 IGYYEYKTTIKPTTPTDANDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   I+ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +  L+ LG+    V ++P  +     + +   A   +Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGLTTGLTQGAKDAIQLGIEHGYQ 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F+ LV+E R +       L+ GR+WT  +A+ +GL+D +G  ++       L      +
Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           +  +++   P   +  DL      SL  D +  +    +Q L   W 
Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSTLLPKSLQPLAVEWQ 591



 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 100/284 (35%), Gaps = 37/284 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51
           + F+   +     +LS+  +  +Y    + +       A  + + G I +          
Sbjct: 19  ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            +++E +     D++ T L+++    P  +      I +AI + 
Sbjct: 79  FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203
             +    K+   PF   +++  A +     +   +  +V  V+ +R I          + 
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEEF 258

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
              L +      A +KKVGL+D +  +++V Q+L          
Sbjct: 259 VAQLKEVNGDLAALSKKVGLVDELATRQQVRQTLAETFGSDGKD 302


>gi|53720054|ref|YP_109040.1| peptidase [Burkholderia pseudomallei K96243]
 gi|53725724|ref|YP_102320.1| peptidase, U7 family protein [Burkholderia mallei ATCC 23344]
 gi|76810646|ref|YP_334296.1| peptidase [Burkholderia pseudomallei 1710b]
 gi|126451071|ref|YP_001081348.1| peptidase, U7 family protein [Burkholderia mallei NCTC 10247]
 gi|126452303|ref|YP_001067106.1| peptidase, U7 family protein [Burkholderia pseudomallei 1106a]
 gi|254177667|ref|ZP_04884322.1| peptidase, U7 family protein [Burkholderia mallei ATCC 10399]
 gi|254191226|ref|ZP_04897730.1| peptidase, U7 family protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254195901|ref|ZP_04902327.1| peptidase, U7 family protein [Burkholderia pseudomallei S13]
 gi|254199213|ref|ZP_04905579.1| putative signal peptide peptidase SppA, 36K type [Burkholderia
           mallei FMH]
 gi|254205520|ref|ZP_04911872.1| putative signal peptide peptidase SppA, 36K type [Burkholderia
           mallei JHU]
 gi|254261915|ref|ZP_04952969.1| peptidase, U7 family protein [Burkholderia pseudomallei 1710a]
 gi|254296852|ref|ZP_04964305.1| peptidase, U7 family protein [Burkholderia pseudomallei 406e]
 gi|254357687|ref|ZP_04973960.1| putative signal peptide peptidase SppA, 36K type [Burkholderia
           mallei 2002721280]
 gi|52210468|emb|CAH36451.1| family S49 unassigned peptidase [Burkholderia pseudomallei K96243]
 gi|52429147|gb|AAU49740.1| peptidase, U7 family protein [Burkholderia mallei ATCC 23344]
 gi|76580099|gb|ABA49574.1| family S49 unassigned peptidase [Burkholderia pseudomallei 1710b]
 gi|126225945|gb|ABN89485.1| putative signal peptide peptidase SppA, 36K type [Burkholderia
           pseudomallei 1106a]
 gi|126243941|gb|ABO07034.1| peptidase, U7 family protein [Burkholderia mallei NCTC 10247]
 gi|147748809|gb|EDK55883.1| putative signal peptide peptidase SppA, 36K type [Burkholderia
           mallei FMH]
 gi|147752963|gb|EDK60028.1| putative signal peptide peptidase SppA, 36K type [Burkholderia
           mallei JHU]
 gi|148026814|gb|EDK84835.1| putative signal peptide peptidase SppA, 36K type [Burkholderia
           mallei 2002721280]
 gi|157807338|gb|EDO84508.1| peptidase, U7 family protein [Burkholderia pseudomallei 406e]
 gi|157938898|gb|EDO94568.1| peptidase, U7 family protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|160698706|gb|EDP88676.1| peptidase, U7 family protein [Burkholderia mallei ATCC 10399]
 gi|169652646|gb|EDS85339.1| peptidase, U7 family protein [Burkholderia pseudomallei S13]
 gi|254220604|gb|EET09988.1| peptidase, U7 family protein [Burkholderia pseudomallei 1710a]
          Length = 333

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 125/289 (43%), Gaps = 17/289 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           +I  R+  L+++      F   S       +  H A + I G+I      +++++   ++
Sbjct: 48  RIFFRFAFLAVLGALAFAFLSVSGDGGKLASGRHTAVVTIDGEIAASTNANAEDINTALD 107

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115
               D     +++ ++SPGGS      ++  I++++ +   KP+   V +M AS GY I+
Sbjct: 108 SAFEDSGTVGVVLKINSPGGSPVQAGIVYDEIRRLRKKYPAKPLYVVVSDMCASGGYYIA 167

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         + KLGV  +   S   K    PFS   PK  
Sbjct: 168 AAADKIYVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFFDPFSPETPKMD 227

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q+++D  +  F++ V + R     ++  +  G  WTGA++ ++GL D  G  + V +
Sbjct: 228 AHAQEMLDEIHAQFIKAVKDGRGARLHESPDIFSGLFWTGAKSIELGLADDYGTTDTVAR 287

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
            +           + D+   ++      +    +         +   ++
Sbjct: 288 DVLK------APDLVDYTVKESLTDRVARRFGAALGKAALKAAVAGGEL 330


>gi|21244537|ref|NP_644119.1| protease IV [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110210|gb|AAM38655.1| protease IV [Xanthomonas axonopodis pv. citri str. 306]
          Length = 633

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/268 (25%), Positives = 123/268 (45%), Gaps = 13/268 (4%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           D+ P VA +   G+I            +     + +   DD   A+++ + SPGG  +A 
Sbjct: 331 DSRPQVAVVVAAGEISGGEQPAGRIGGESTAALLRQARDDDDVKAVVLRVDSPGGEVFAS 390

Query: 84  EAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I R +  + +  KPV+  + ++AAS GY IS  ++ I A  +++ GSIG+    P + 
Sbjct: 391 EQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGSIGIFGMVPNLT 450

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LDK+GV    V ++           ++P A Q++Q V++  Y  F   V+++R+   D
Sbjct: 451 RALDKIGVHTDGVATTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTGKVAQARHQSVD 510

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261
               ++ GR+W+GA+AK+ GL+D  GG +E            +   +++    P   +  
Sbjct: 511 AIDKVARGRVWSGAQAKERGLVDAFGGMQEAVADAADRAKLSRGKFRVRYVEKPATPFSQ 570

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289
            +   + S +    +        + L A
Sbjct: 571 FMSGFAGSRMGAWMLS--DSGMARALLA 596



 Score = 65.8 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 97/288 (33%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRGQIEDS------ 50
           M F  + I        L  L +V+    +  +   P        I   G + +       
Sbjct: 21  MNFTRRLIFNLVFFGFLFLLLLVFVVALARGDGTKPLAERTTLVINPEGTLVEQFSADPV 80

Query: 51  ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQ 91
                             ++L+  IE   +D     ++++L     S +A +  +  A+Q
Sbjct: 81  SRSLAKAVGDKSAEEVQLRDLVRVIEAAGKDRKIERVLLNLDKLQPSGFASQREVAVALQ 140

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGV 150
           K++     I    E  +   YL++  +N +       V   G+  ++  + +   DKLGV
Sbjct: 141 KLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGV 200

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-- 206
            +   +    K+   P+     +  A +     ++  +  ++  V  +R +   +     
Sbjct: 201 DVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWRRYLADVGTARKLSPAQLAAGI 260

Query: 207 ------LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 ++         A +  L+D +  +EEV   L   GV  S   
Sbjct: 261 DTLPEGVAAAGGDLAKFALQQKLVDGLKTREEVDALLVQRGVADSDAD 308


>gi|218258308|ref|ZP_03474710.1| hypothetical protein PRABACTJOHN_00365 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225548|gb|EEC98198.1| hypothetical protein PRABACTJOHN_00365 [Parabacteroides johnsonii
           DSM 18315]
          Length = 522

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 14/231 (6%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIED--------------SQELIERIERISRDDSATAL 69
             S     ++N   +A +   G+I D              S+E+  ++ ++  DD   A+
Sbjct: 292 IVSIKVKEKENKNKIAVLYAEGEIRDEDSSSPFSADEQVISEEMANKLRKLKDDDDVKAV 351

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           +  ++SPGGSAY  E I++ + ++K +KP++  +   AAS GY ISCA+N IVA  T+L 
Sbjct: 352 VFRVNSPGGSAYISEQIWKEVVELKAKKPIVVSMGNYAASGGYYISCAANKIVAERTTLT 411

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV           DK+GV+   VK++           +      ++Q  V+ +Y  F
Sbjct: 412 GSIGVFGVVRNFTGTFDKVGVTTDVVKTNTFADLGDMSRPMREDEKALIQRGVEQTYDLF 471

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +   ++ R +   +   +  GR+WTG +A + GL+D +GG ++  +    L
Sbjct: 472 LTRCADGRGMTKAEIDSIGQGRVWTGEQALERGLVDQLGGMDDAIKEAATL 522



 Score = 93.9 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 86/260 (33%), Gaps = 23/260 (8%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------------QELIE 55
           +  +         SS  + +   V ++++ G + D                     ++I+
Sbjct: 27  IFFIIGVAASADGSSEYKPDKNTVFKLSLDGVLVDQTVKNPFSELMGESSNQMAVSDVIK 86

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
            I R   +D+   + +   S        EAI R +   K+    I    +      Y + 
Sbjct: 87  AIRRAKANDNIKGIYLEAGSLSTGFAGIEAIRRELVDFKDSGKFIVSYGDFYTQGSYYLC 146

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVNPK 173
             ++ +       V  +G+  Q  +     +K+GV     K    K+   PF   + +  
Sbjct: 147 SVADSVFLNPQGSVSLVGLASQGIFFTGLAEKVGVEHYIFKVGTYKSAVEPFFLKKFSDA 206

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE--AKKVGLIDVVGGQE 231
             + +   + S +      + +SRNI  D+     +  +  G    A    L D +  + 
Sbjct: 207 NREQLTSFLGSVWGNLTTAIEKSRNISSDELNRYLNEGLAMGQASNAIDYKLADGLRYRY 266

Query: 232 EVWQSLYALGVDQSIRKIKD 251
           EV   +  +       K+K 
Sbjct: 267 EVENCVKEMAGQDVKGKLKT 286


>gi|229592113|ref|YP_002874232.1| putative peptidase [Pseudomonas fluorescens SBW25]
 gi|229363979|emb|CAY51518.1| putative peptidase [Pseudomonas fluorescens SBW25]
          Length = 327

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 124/294 (42%), Gaps = 18/294 (6%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIE 58
           +  K+ T   +++++ L              + + A I +RG I D     +  ++  + 
Sbjct: 41  IFFKLLTFVWLIAMLALFSPLMDMEKSATRGAHYTALIEVRGVIADKESASADNIVSSLR 100

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAGYLIS 115
               D     +I+ ++SPGGS      ++  I++   +     +   + ++ AS  Y I+
Sbjct: 101 AAFEDPKVKGVILRINSPGGSPVQSGYVYDEIRRLRGLHPDIKLYAVISDLGASGAYYIA 160

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I A + SLVGSIGV          ++KLGV  ++  S   K+   PF        
Sbjct: 161 SAADQIYADKASLVGSIGVTAAGYGFVGTMEKLGVERRTYTSGEHKSFLDPFQPQKADET 220

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
           Q  Q V+D+++  F+  V + R           L  G +W+G +A  +GLID +G    V
Sbjct: 221 QFWQGVLDTTHRQFIASVKQGRGDRLKDKDHPELFSGLVWSGEQALPLGLIDGLGSASSV 280

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
            + +         +++ D+   ++ +    K L  S  + + + L    +   L
Sbjct: 281 ARDVIG------EKELVDFTVEESPFDRFSKKLGSS--VAEKLALYMGFQGPTL 326


>gi|89094371|ref|ZP_01167312.1| peptidase, putative [Oceanospirillum sp. MED92]
 gi|89081430|gb|EAR60661.1| peptidase, putative [Oceanospirillum sp. MED92]
          Length = 349

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/277 (23%), Positives = 128/277 (46%), Gaps = 19/277 (6%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSH-----VEDNSPHVARIAIRGQI-----EDSQELIE 55
           ++    + +L+   L  + +   +       +    H A I ++G I      ++  +I 
Sbjct: 61  RRWGIFFKLLTFGYLFALLYLLLAGPQIPVDQAGEAHTAIIEVKGPISADDEANADSIIW 120

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN---RKPVITEVHEMAASAGY 112
            +    +++ A A+I+ ++SPGGS      I+  I++++     KPV   + ++ AS  Y
Sbjct: 121 SLREAFKEEQAKAIILRINSPGGSPVQSGYIYDEIKRLRQIYTDKPVYAVITDIGASGAY 180

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            I+ A++ I A + SLVGSIGV+         ++K+GV  +   +   KA   PFS    
Sbjct: 181 YIAAAADSIYADKASLVGSIGVVAGGFGFVDLMNKVGVERRLYTAGEHKAFLDPFSPSKE 240

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
              +  Q V+++++  F+  V   R      +  L  G +WTG +A  +GL+D +G    
Sbjct: 241 GEKEFWQGVLNTTHQQFIDQVKLGRGERLKDSPELFSGLVWTGEQAVDLGLVDGLGSSSY 300

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           V + +        + K+ D++P +  W   +  L +S
Sbjct: 301 VAREIVK------VEKLVDYSPQQAPWKQLVDELGVS 331


>gi|253989459|ref|YP_003040815.1| protease 4 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780909|emb|CAQ84071.1| protease iv (endopeptidase iv) (signal peptide peptidase)
           [Photorhabdus asymbiotica]
          Length = 618

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 130/287 (45%), Gaps = 23/287 (8%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSAT 67
              +++  ++  +    +  ++A I  +G I D               +I +   DD+  
Sbjct: 308 FNAISIYDYAPQNR-SSSKGNIAVIVAQGAIIDGQQASGMVGGDTTAAQIRQARLDDNIK 366

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAET 126
           A+++ ++SPGGS  A + I   +  ++   KPV+  +  MAAS GY IS  +N I+A ++
Sbjct: 367 AVVLRVNSPGGSVSASDVIRTELAALRAANKPVVVSMGGMAASGGYWISTPANYIIANQS 426

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           +L GSIG+       +  LD +G+    V ++P+    S    ++ +  ++MQ  +++ Y
Sbjct: 427 TLTGSIGIFGVITTYENSLDHVGIHTDGVSTTPLAD-ISFTKGLSKEFSELMQLNIENGY 485

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
             F+ LV+++RN   ++   ++ G +W G +AK  GL+D +G  ++       L      
Sbjct: 486 KNFIGLVADARNKTPEEVDKIAQGHVWIGNDAKTNGLVDQLGDFDDAVAKAAELAKLD-- 543

Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
                    K         +S S LL + +    Q ++      W P
Sbjct: 544 ---------KPELDWMQPEMSFSELLINQLTATTQARIPEAIQAWLP 581



 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 108/332 (32%), Gaps = 48/332 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH--VARIAIRGQIEDSQ------- 51
           + FV + +     ++ ++ +   +  +    +    +     + + G + D         
Sbjct: 19  LNFVREVVSNLIFIVLILAVIGGFLIYQQPNKTVDSYQGALYVNLTGVVVDQVSSRNPLN 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               ++++ I +   DD  T LI+ L    G+     + I +AI
Sbjct: 79  QLGRELFGASSNKLQENSLFDIVDNIRQAKTDDKITGLILKLDDFIGADQPSMQYIGKAI 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
            + K     +  + +    + Y ++  ++ I  +    VG  G      Y K  LD L V
Sbjct: 139 NEFKTSGKPVYSISDSYNQSQYYLATYADKIYLSPQGTVGLYGYSTNNLYYKSLLDSLKV 198

Query: 151 SIKSVKSSPMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           +    +    K+   P    +++P A +     V+  +H ++  ++ +R +   +     
Sbjct: 199 TTHIFRVGTYKSAVEPVMRDDMSPAAREADSLWVNGLWHNYLNTIAINRKLSVHQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK------IKDWNP 254
                 L          A K  L+D V  +  +   +          +      I D+ P
Sbjct: 259 EEMIADLRAAGGDNAQYALKRKLVDYVAPRNIIESEMTKAFGWDEKNQHFNAISIYDYAP 318

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
                     N+++       I   + + + G
Sbjct: 319 QNRS--SSKGNIAVIVAQGAIIDGQQASGMVG 348


>gi|189466890|ref|ZP_03015675.1| hypothetical protein BACINT_03271 [Bacteroides intestinalis DSM
           17393]
 gi|189435154|gb|EDV04139.1| hypothetical protein BACINT_03271 [Bacteroides intestinalis DSM
           17393]
          Length = 589

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/270 (26%), Positives = 133/270 (49%), Gaps = 13/270 (4%)

Query: 30  HVEDNSPHVARIAIRGQI------------EDSQELIERIERISRDDSATALIVSLSSPG 77
             + +   VA     G I             +S+++I  + ++  ++   A+++ ++SPG
Sbjct: 298 PKDKSGNIVAVYYAYGAIDSGSSYADSENGINSEKVIRDLRKLKENEDVKAVVLRVNSPG 357

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           GSA+  E I+ A+ ++K  KPVI  + + AAS GY ISC ++ IVA  T+L GSIG+   
Sbjct: 358 GSAFGSEQIWYAVTELKKEKPVIVSMGDYAASGGYYISCNADSIVADPTTLTGSIGIFGM 417

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +P VK   DK+G+S   VK++           +N     +MQ++V+  Y  FV+  +E R
Sbjct: 418 FPNVKGLTDKIGLSFDVVKTNTYSDFGMMGRALNDGEKALMQNMVNEGYELFVKRCAEGR 477

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
            +  D+   +++GR+WTGA+AK++GL+D +GG ++  +   A         +  +   K+
Sbjct: 478 GMTTDEIKKIAEGRVWTGAKAKELGLVDELGGLDKALEMAIAKAGL-DAYTVMSYPGKKS 536

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           ++   +       +    +           
Sbjct: 537 FFETLMDTNPGRYIQSRMLKGKVGELYNQF 566



 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 104/281 (37%), Gaps = 33/281 (11%)

Query: 1   MEFVLKK-------IKTRYVMLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQIE-- 48
           M+   K        I    V+L  V++ +++   SS   +       V  + +RG +   
Sbjct: 1   MKDFFKFTLATITGIIVSCVVLFFVSILILFSMLSSSESETQVRKNSVMMLDMRGMLSER 60

Query: 49  -----------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
                               +++  I++   +++   + +   S G    + E I +A+ 
Sbjct: 61  SQDNPFDMFLSEDETTYGLDDILSSIQKAKDNENIKGIYLQAGSMGAGFASIEEIRKALA 120

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
             K     +    +  +   Y ++  ++ ++      +G  G+     + K  L K+GV 
Sbjct: 121 DFKTSGKFVVAYGDQYSQRLYYLASVADKVILNPQGSIGWYGLASTPVFYKDLLSKIGVE 180

Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           ++  K    K+   PF  +E++P   + +   +D  +   +  +SESR +  +K    +D
Sbjct: 181 MQVFKVGTYKSAVEPFISTEMSPANREQVTVFLDGIWGQMLGDISESRGVSKEKLNEAAD 240

Query: 210 G--RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                +   +  + GL D +  + +V   L  L       +
Sbjct: 241 KMLMFYPAEDCVEYGLADTLIYKNDVRNYLKTLIGIDEDDR 281


>gi|67641118|ref|ZP_00439903.1| peptidase, U7 family protein [Burkholderia mallei GB8 horse 4]
 gi|226199956|ref|ZP_03795506.1| putative signal peptide peptidase SppA, 36K type [Burkholderia
           pseudomallei Pakistan 9]
 gi|242315612|ref|ZP_04814628.1| putative signal peptide peptidase SppA, 36K type [Burkholderia
           pseudomallei 1106b]
 gi|225928012|gb|EEH24049.1| putative signal peptide peptidase SppA, 36K type [Burkholderia
           pseudomallei Pakistan 9]
 gi|238521982|gb|EEP85429.1| peptidase, U7 family protein [Burkholderia mallei GB8 horse 4]
 gi|242138851|gb|EES25253.1| putative signal peptide peptidase SppA, 36K type [Burkholderia
           pseudomallei 1106b]
          Length = 305

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 125/289 (43%), Gaps = 17/289 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           +I  R+  L+++      F   S       +  H A + I G+I      +++++   ++
Sbjct: 20  RIFFRFAFLAVLGALAFAFLSVSGDGGKLASGRHTAVVTIDGEIAASTNANAEDINTALD 79

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115
               D     +++ ++SPGGS      ++  I++++ +   KP+   V +M AS GY I+
Sbjct: 80  SAFEDSGTVGVVLKINSPGGSPVQAGIVYDEIRRLRKKYPAKPLYVVVSDMCASGGYYIA 139

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         + KLGV  +   S   K    PFS   PK  
Sbjct: 140 AAADKIYVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFFDPFSPETPKMD 199

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q+++D  +  F++ V + R     ++  +  G  WTGA++ ++GL D  G  + V +
Sbjct: 200 AHAQEMLDEIHAQFIKAVKDGRGARLHESPDIFSGLFWTGAKSIELGLADDYGTTDTVAR 259

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
            +           + D+   ++      +    +         +   ++
Sbjct: 260 DVLK------APDLVDYTVKESLTDRVARRFGAALGKAALKAAVAGGEL 302


>gi|229586788|ref|YP_002845289.1| Signal peptide peptidase SppA, 36K type [Rickettsia africae ESF-5]
 gi|228021838|gb|ACP53546.1| Signal peptide peptidase SppA, 36K type [Rickettsia africae ESF-5]
          Length = 304

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 152/298 (51%), Gaps = 15/298 (5%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSW-----------SSHVEDNSPHVARIAIRGQIEDSQEL 53
            ++IK+R ++  L  + ++   +              +  N  ++A + I   I + ++ 
Sbjct: 11  RRQIKSRLLIWKLTAIILIAIVFLLVGKDFAPKEVLPINSNEDYIASVLIDEIILEDEKR 70

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
            +++++I  D    ALIV+++SPGG+    E I+  ++K+  +KPV+  +  MAAS GYL
Sbjct: 71  DKKLKKIIDDSHIKALIVNVNSPGGTVVGAEKIYNILRKISAKKPVVIVMGTMAASGGYL 130

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           IS   + I++   ++ GSIGV+ Q   V     KLG+   + KS  +KA P+P  ++   
Sbjct: 131 ISLGGDYIISHNGTITGSIGVILQTAEVTELAQKLGIKFNNFKSGELKAVPNPTEKLTEA 190

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
               + D ++ +Y++F+ LVSE RN+P ++   L+DGR+++G +A K+ L+D +G ++  
Sbjct: 191 VRIAIMDNIEDTYNFFLELVSERRNLPIEEVKKLADGRVYSGRQALKLKLVDAIGSEDTA 250

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
            + L  +        +KD+         D+      S+     P   +    G+ A++
Sbjct: 251 LKWLQEVQKINVNLLVKDYQLKPKPKLMDIILEDFDSIA----PSFFKNSFNGIKAIF 304


>gi|297544279|ref|YP_003676581.1| signal peptide peptidase SppA, 36K type [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842054|gb|ADH60570.1| signal peptide peptidase SppA, 36K type [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 305

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 83/271 (30%), Positives = 139/271 (51%), Gaps = 13/271 (4%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL----------IERIERISRDDS 65
           S+V++ V        V   S  +  I I G I  +  +          +E+I +   D++
Sbjct: 19  SIVSMFVSMPQQDKGVSTASNTIGVIMIEGVIGQTTNILGIPQNINDPVEQIRKAQEDNA 78

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP-VITEVHEMAASAGYLISCASNIIVAA 124
             A++V ++SPGGSA     I++ ++K+K     +I  + + AAS GY+++ A +IIVA 
Sbjct: 79  VRAVVVKINSPGGSAAKSIEIYKELKKLKKTGKKIIVSMGDAAASGGYMVASAGDIIVAN 138

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             ++ GSIGV+ QY   +   DKLG+   ++KS P K   SP  ++ P+  ++++ V++ 
Sbjct: 139 PATITGSIGVIMQYTNYEGLYDKLGLKEITIKSGPYKDIGSPTRDLTPEEKKILRGVIED 198

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           ++  F+ +VSE R +P DK   L+DGRI+TG +A KVGL+D +G   +           Q
Sbjct: 199 TFQQFLEIVSEGRKMPIDKVKELADGRIFTGRQALKVGLVDKLGDFYDAVDIAAKESGIQ 258

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
               +K +  P       L      S LED 
Sbjct: 259 GKPVLKYYATP--TPLSILFGSGAKSNLEDI 287


>gi|78355555|ref|YP_387004.1| signal peptide peptidase A [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217960|gb|ABB37309.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 280

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/265 (24%), Positives = 126/265 (47%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVS 72
           V L    +  +   +          +  I ++G + D+   ++  E + RD     +++ 
Sbjct: 8   VALFWGAMATLRLLFGDEDFSGGQRLGLINVQGMLLDTTPYVDFAEELRRDPDVRGVLLR 67

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           ++SPGG+    + +  A++++   KPV+  +   AAS GY IS  +  IVA  ++L  SI
Sbjct: 68  VNSPGGAVAPSQELHDAVKRLATSKPVVVSMGAAAASGGYYISVPATRIVANPSTLTASI 127

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GV  +   V   +  LG+   ++ S  +K   SPF+E+ P+  + +Q VV   Y  FV+ 
Sbjct: 128 GVKMEMGNVHELMKALGIHHVALTSGELKNAGSPFAEMTPREREYLQSVVMDMYDQFVQA 187

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           V+E R++P +   +++DGR  TG +A + GL+D++G +    Q L  L        ++  
Sbjct: 188 VAEGRHLPPEDVRLVADGRAMTGRQALQAGLVDMLGDRHTAMQELLRLCNATGELPVQAG 247

Query: 253 NPPKNYWFCDLKNLSISSLLEDTIP 277
              K     +L    + + +   + 
Sbjct: 248 PEEKRSILRELFLSVLPAGVISGMD 272


>gi|121591501|ref|ZP_01678769.1| protease IV [Vibrio cholerae 2740-80]
 gi|121546642|gb|EAX56829.1| protease IV [Vibrio cholerae 2740-80]
          Length = 605

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 14/287 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           +       +       ++  +A +   G I D            +   +     D +  A
Sbjct: 307 IGYYEYKTTIKPTTLTDANDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   I+ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +  L+ LG+    V ++P  +     + +   A   +Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGLTTGLTQGAKDAIQLGIEHGYQ 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F+ LV+E R +       L+ GR+WT  +A+ +GL+D +G  ++       L      +
Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           +  +++   P   +  DL      SL  D +  +    +Q L   W 
Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSTLLPKSLQPLAVEWQ 591



 Score = 90.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 99/284 (34%), Gaps = 37/284 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51
           + F+   +     +LS+  +  +Y    + +       A  + + G I +          
Sbjct: 19  ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            +++E +     D++ T L+++    P  +      I +AI + 
Sbjct: 79  FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-------- 203
             +    K+   PF   +++  A +     +   +  +V  V+ +R I            
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEQF 258

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
              L +      A +KKVGL+D +  +++V Q+L          
Sbjct: 259 VAQLKEVNGDLAALSKKVGLVDELATRQQVRQTLAETFGSDGKD 302


>gi|325497076|gb|EGC94935.1| protease 4 [Escherichia fergusonii ECD227]
          Length = 594

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 15/283 (5%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATAL 69
            ++   ++  + V+     +  +   G I D +E            +I     D    A+
Sbjct: 286 AISFYDYALKTPVKTPE-MIGVVFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAI 344

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           ++ ++SPGGS  A E I   +   K   KPV+  +  MAAS GY IS  +N I+A  ++L
Sbjct: 345 VLRVNSPGGSVTASEVIRSELAAAKAAGKPVVVSMGGMAASGGYWISTPANYIIANPSTL 404

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIG+      V+  LD +GV    V +SP+       S         MQ  +++ Y  
Sbjct: 405 TGSIGIFGVINTVENSLDSIGVHTDGVSTSPLANMSVTQSLPTEVQQM-MQLSIENGYKR 463

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           F+ LV+++R    ++   ++ G +WTG +AK  GL+D +G  ++       L        
Sbjct: 464 FITLVADARKSTPEQVDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWS 522

Query: 249 IKDWNPPKNYWFC--DLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           I  +     ++    D  + S+ ++L   I  M    +    +
Sbjct: 523 INYYQDEPTFFDMVVDSMSGSVRAMLPQAIQAMLPAPLATAVS 565



 Score = 94.3 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 99/280 (35%), Gaps = 39/280 (13%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARI-AIRGQIEDSQ--------------- 51
           +   ++ L L+ + +     S+   D++   A +  I G I D                 
Sbjct: 3   LNLLFIFLVLIGVGIWMQVSSNGSSDSASRGALLLDISGVIVDKPSNNHRLGVIGRQLFG 62

Query: 52  ------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKP 98
                       +++  I +   D + T +++ L +  G+     + I +A+++ ++   
Sbjct: 63  ASSERLQENSLFDIVNTIRQAKDDSNITGIVLDLENFAGADQPSMQYIGKALREFRDSGK 122

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            +  + E      Y ++  +N I  +    V   G      Y K  LDKL VS    +  
Sbjct: 123 PVIAIGESYTQGQYYLASFANKIWLSPQGTVDLHGFATNGLYYKSLLDKLKVSTHVFRVG 182

Query: 159 PMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLS 208
             K+   PF   +++P A +     V   +  ++  ++ +R I   +           L+
Sbjct: 183 TYKSAVEPFIRDDMSPAAREADSRWVGELWQNYLNTIAANRQISAQQVFPGAQAMIADLT 242

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                T   A    L+D +G   +V ++L          K
Sbjct: 243 KLGGDTAQYALDHKLVDALGSSADVEKALTKQFGWSKADK 282


>gi|124022325|ref|YP_001016632.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus str. MIT 9303]
 gi|123962611|gb|ABM77367.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus str. MIT 9303]
          Length = 270

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 133/265 (50%), Gaps = 6/265 (2%)

Query: 33  DNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            +   +A I+I G I  +  + +++ I+ +   +   AL++ + SPGG+    + I  A+
Sbjct: 8   KSRRRIAHISIDGAISGATRERVLKAIKEVEERE-FPALLLRIDSPGGTVGDSQEIHAAL 66

Query: 91  QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
            +++ +   V+     ++AS G  +  A+  IVA   ++ GSIGV+ +   +   L+++G
Sbjct: 67  LRLREKGCHVVASFGNVSASGGVYVGVAAEKIVANPGTITGSIGVILRGNNLSKLLERIG 126

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +  ++VKS   K   SP   +  +  Q++Q ++DSSY  FV  V+E R++  ++    +D
Sbjct: 127 IRFETVKSGTYKDILSPDRALTAEERQLLQSLIDSSYEQFVNAVAEGRHLSAEEVRNFAD 186

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFCDLKNLSI 268
           GR+++GA+A ++GLID +G +E   +    L        +      PK      L    +
Sbjct: 187 GRVFSGAQAHELGLIDELGDEEHARKLAAKLADLDEANTQTLKLGRPKKRLAGFLPGSKL 246

Query: 269 SSLLEDTIPLMKQTKVQGLWAVWNP 293
            S L + + L      Q LW ++ P
Sbjct: 247 LSKLAELLNLELGNSGQVLW-LFLP 270


>gi|119720728|ref|YP_921223.1| signal peptide peptidase SppA, 36K type [Thermofilum pendens Hrk 5]
 gi|119525848|gb|ABL79220.1| signal peptide peptidase SppA, 36K type [Thermofilum pendens Hrk 5]
          Length = 307

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 133/293 (45%), Gaps = 20/293 (6%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----------DSQELIERIERI 60
            V + ++   +V     +     +P++A+I I+G I+             +E I+ +++ 
Sbjct: 17  IVAVVILGAVLVLLRQGATQTRLTPYIAQITIKGTIDYASSSIFGATPGVEEYIKLVKQA 76

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
             D  A A+++   SPGG+  A + +++A++++  +K V++    + AS  Y+ +  S  
Sbjct: 77  EEDPMAKAVLLVFDSPGGTVTASDELYQAVKELSQKKVVVSYAKGLLASGAYMAALPSRA 136

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           I+A+ TS VGS+GV+     V   L K+GV++ + KS  +K   SP+  +  +  +++++
Sbjct: 137 ILASPTSEVGSVGVIVTVLNVGNLLGKIGVTVYTFKSGELKDVGSPYRPMTEEDAKVLEE 196

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  +  F   V E R     +      GR +T  +A + GLID V   +E      AL
Sbjct: 197 MVNYYFGLFKGRVLEHRGNVSSEV---FSGRPFTPDKALQAGLIDKVCTYQEAVNYTRAL 253

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
                  ++ +  P        L      +     IP +       +  +W P
Sbjct: 254 ANLPETAEVVELKPRTPTLLDLLLGTYSGAGNRLVIPSIV------VLYMWPP 300


>gi|297618458|ref|YP_003703617.1| signal peptide peptidase SppA, 36K type [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297146295|gb|ADI03052.1| signal peptide peptidase SppA, 36K type [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 295

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 145/294 (49%), Gaps = 19/294 (6%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN------SPHVARIAIRGQIEDS------- 50
           + +++    ++   + + V+   WS     +         +  + I G +  +       
Sbjct: 1   MRQRLVVGLIVAFCLAVLVLAVKWSPDTSGSASMVGAGGAIGVVRIEGVLSGASQGYGGA 60

Query: 51  ---QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEM 106
              +E++E +    + D   A+++ + SPGGSA A + I R I+++K + KP++  + ++
Sbjct: 61  TQTEEIMEALREAGKRDDIKAVLIRIDSPGGSAVAAQEIAREIERLKKKGKPLVASMGDV 120

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           AAS GY ++ + + I A   +  GSIGV+ +   ++    ++G+  + +KS   K   S 
Sbjct: 121 AASGGYWVAASCDEIFANPATTTGSIGVITEQVNLEELFSRMGIETEVIKSGSYKDMGSI 180

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESR--NIPYDKTLVLSDGRIWTGAEAKKVGLI 224
             +++P+  ++++++VD  Y  F+  V + R   +  D+   ++DGR+ TG +AK++GL+
Sbjct: 181 TRKLSPEERKLLEELVDDVYQQFLLQVEKGRRGKMSPDEIRTIADGRVMTGNKAKQIGLV 240

Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278
           D +G   +  +    L       ++ + NP   +     + L+  ++L+  + +
Sbjct: 241 DHLGNYYDALERTKELANLSGEPQVIELNPQDPFSKVFSQLLNSKAILQPYLSI 294


>gi|15604382|ref|NP_220898.1| protease IV (sppA) [Rickettsia prowazekii str. Madrid E]
 gi|3861074|emb|CAA14974.1| PROTEASE IV (sppA) [Rickettsia prowazekii]
 gi|292572137|gb|ADE30052.1| Signal peptide peptidase SppA 36K type [Rickettsia prowazekii Rp22]
          Length = 305

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/263 (27%), Positives = 138/263 (52%), Gaps = 4/263 (1%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
            +  N  ++A + I G I + ++  +++++I  D    ALIV+++SPGG+    E I+  
Sbjct: 47  SINSNEDYIASVLIDGIILEDEKRDKKLKKIIDDSHIKALIVNVNSPGGTVVGSEKIYNI 106

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           ++K+  +KPV+  +  MA S GYLIS   + I++   ++ GSIGV+ Q   V     KLG
Sbjct: 107 LRKISAKKPVVVIMGTMATSGGYLISLGGDYIISHNGTITGSIGVILQTAEVTELAQKLG 166

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +   + KS   KA P+P  ++       + + ++ +Y +F+ LVSE R++P ++   L+D
Sbjct: 167 IKFNNFKSGAFKAVPNPTEKLTEAVRLAIMENIEDTYKFFIELVSERRSLPIEEVQKLAD 226

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           GR+++G +A K+ L+D +G ++   + L  +        IKD+         ++     +
Sbjct: 227 GRVYSGRQALKLRLVDTIGSEDTALKWLQEIKKININLTIKDYQLKPKSTLIEMIFEDFN 286

Query: 270 SLLEDTIPLMKQTKVQGLWAVWN 292
           SLL        +    G+ +V+ 
Sbjct: 287 SLLL----SFFKNSFSGIKSVFQ 305


>gi|313902826|ref|ZP_07836223.1| signal peptide peptidase A [Thermaerobacter subterraneus DSM 13965]
 gi|313466946|gb|EFR62463.1| signal peptide peptidase A [Thermaerobacter subterraneus DSM 13965]
          Length = 318

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 144/285 (50%), Gaps = 22/285 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSW------SSHVEDNSPHVARIAIRGQI------------ 47
           ++++  +V++  + +     +              +  +A + I G I            
Sbjct: 11  RRLQWAFVLVLGLLVAGSVVALLVPGGRDGLGAGTAGQIAVVTIDGPIAAGASAEGLLGA 70

Query: 48  -EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHE 105
              + +++ ++++   D +  A+++ +++PGGSA A + I  A+Q+++   KPV+  + +
Sbjct: 71  VVGADDIVSQLQQAREDPAVAAVVIRMNTPGGSAAAAQEIGVAVQRLREAGKPVVVSIGD 130

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           + AS GY I+  ++ IVA   SL GSIGV+ +  + +   +KLG+ ++++KS P K   S
Sbjct: 131 LGASGGYWIAAMADRIVANPASLTGSIGVIMEVTHYEDLYEKLGIDVETIKSGPFKDIGS 190

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
               +  +  +++Q +V+  Y  FV +V+  R +  ++ L L+DGR++TG +AK  GL+D
Sbjct: 191 ATRPLTAEERRLLQGLVNDIYQQFVDVVARGRGMSRERVLELADGRVFTGRQAKAEGLVD 250

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270
            +G  E+       L   +   ++ ++ P  +     L+ L  S 
Sbjct: 251 QLGTFEDAADLAAQLAGLED-YELIEYGP-SSPLQDLLRWLGASG 293


>gi|284037297|ref|YP_003387227.1| signal peptide peptidase SppA, 67K type [Spirosoma linguale DSM 74]
 gi|283816590|gb|ADB38428.1| signal peptide peptidase SppA, 67K type [Spirosoma linguale DSM 74]
          Length = 589

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 115/249 (46%), Gaps = 10/249 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGG 78
           +      S  +A I   G I           S+ ++E + +   DD   A+++ ++S GG
Sbjct: 298 TESEGTGSSRIAVIVASGDIQSGKSGENSIGSETIVEELRKARLDDKVKAIVLRVNSGGG 357

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           SA A + ++R +Q  +  KPVI  + + AAS GY +    + IVA   ++ GSIGV    
Sbjct: 358 SALASDVMYREVQLARKSKPVIGSMSDYAASGGYYMLMGCDKIVAQPNTITGSIGVFSLL 417

Query: 139 PYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
              + F  DKLGV+   VK++     P+   E+ P   Q MQ   +  Y  F    +  R
Sbjct: 418 FNTENFFKDKLGVTYDRVKTNTNADFPTGTHEMTPFQKQTMQRATERIYAEFTGKAAAGR 477

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
            +P D    ++ GR+WTG++ K +GL+D +GG ++  +        +       + P K 
Sbjct: 478 KLPIDSLRAIAGGRVWTGSQGKALGLVDQLGGLDDAVKLAAQTAKLKEGDYKLKYQPRKK 537

Query: 258 YWFCDLKNL 266
            +F  L   
Sbjct: 538 EFFEQLMMS 546



 Score =  106 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 103/300 (34%), Gaps = 25/300 (8%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIR---------------GQIEDSQE 52
           + +    L L+ L     S           V ++ +                G I    +
Sbjct: 17  LFSFVGFLLLIGLGTALSSSDKKTTVKENTVLKLDLDKPIEERSVDNPFKGFGPISGGGD 76

Query: 53  ------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
                 L + ++    DD    + +   SP     + E I  A+   K  K  +    E 
Sbjct: 77  AIGLIELKQTLKEAKDDDKIKGIYLQTESPAAGWASLEEIRNALIDFKQSKKFVYAYAET 136

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
               GY I+  ++ I       +   G+  +  + K  LDKLG+  +  K    K+   P
Sbjct: 137 MTEKGYYIASVADKIYLNPAGDLEWNGLNAELSFFKGTLDKLGIKPEIFKVGEFKSAVEP 196

Query: 167 F--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGL 223
           F   +++    + +   ++S     +  +++SRN+  D     +D   I   A+A +  L
Sbjct: 197 FIREDMSDPNRKQVNSFLNSVNDHMLVRIAQSRNLRVDSLKRYADNLTIQKPADALRTKL 256

Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
           +  +G Q+E+   +         +KI ++     Y   +  +          I ++  + 
Sbjct: 257 VTNIGYQDELESVIKKQLGVDEKKKI-NYVSLSKYENSEKVDTESEGTGSSRIAVIVASG 315


>gi|104780778|ref|YP_607276.1| peptidase SppA [Pseudomonas entomophila L48]
 gi|95109765|emb|CAK14470.1| putative peptidase SppA [Pseudomonas entomophila L48]
          Length = 327

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 131/294 (44%), Gaps = 18/294 (6%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIE 58
           +  K+ T   +  ++ L             +  H A + +RG I D     +  +++ + 
Sbjct: 41  IFFKLLTFVYLFGMLALFTPLMDVDKAASRSGSHTALVEVRGVIADQEPASADNIVKSLR 100

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT---EVHEMAASAGYLIS 115
              +D    A+++ ++SPGGS      ++  I++++   P I     + ++ AS  Y I+
Sbjct: 101 EAFKDSKTKAVVMRINSPGGSPVQAGYVYDEIRRLRGEYPAIKLYAVITDLGASGAYYIA 160

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I A + SLVGSIGV          + KLGV  ++  +   KA   PFS   P+  
Sbjct: 161 SAADEIYADKASLVGSIGVTAAGYGFVGAMGKLGVERRTYTAGEHKAFLDPFSPQKPEET 220

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
              Q V+D+++  F+ +V + R           L  G IW+G +AK++GL+D +G    V
Sbjct: 221 AFWQGVLDTTHRQFIAVVKQGRGERLKDKEHPELFSGLIWSGEQAKELGLVDGLGSASYV 280

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
            + +         +++ D+   ++ +    K L  S  + + + +    +   L
Sbjct: 281 AREIVG------EKELVDFTVQESPFDRFSKRLGAS--VAERLSMYMGFQGPSL 326


>gi|86151511|ref|ZP_01069726.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|157414382|ref|YP_001481638.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|315123672|ref|YP_004065676.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|85841858|gb|EAQ59105.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|157385346|gb|ABV51661.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|307747028|gb|ADN90298.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. jejuni M1]
 gi|315017394|gb|ADT65487.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315930942|gb|EFV09918.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 298

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/275 (24%), Positives = 130/275 (47%), Gaps = 2/275 (0%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64
           +K I T +    L+ + +     S++   N  ++ RI ++G+I DS  ++E+I     D 
Sbjct: 15  IKFINTYFKTFVLLLIVIWILMPSANSSSNLANLERIDLKGEIFDSSAVLEKIINAKNDS 74

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
           +   ++  + SPGG+      +  AI+ +K +KPV+       AS  YL    +N I+A 
Sbjct: 75  NIKGVLFVVDSPGGAFAPSMELALAIKDLKIKKPVLVYASGTMASGSYLAGVGANKILAN 134

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             S +GSIGV+ Q   +    +KLG+  +++++   K+  +     N      +Q ++D 
Sbjct: 135 PASFIGSIGVIMQGADLSGLANKLGIKEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQ 194

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           SY  F   V++ R +  +K    ++ R++  A+AK++GLID +   E   + L  L    
Sbjct: 195 SYDLFTGFVAKERALDLNKKDQWANARVFLAAKAKELGLIDELSNYENAKKELEKLANVS 254

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
           +   +       + +   L+  + S + +  I + 
Sbjct: 255 N--PVWKEEDKIDKFLNRLEGQTSSLISKSLIEIA 287


>gi|52841976|ref|YP_095775.1| signal peptide peptidase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52629087|gb|AAU27828.1| signal peptide peptidase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 318

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 128/291 (43%), Gaps = 23/291 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWS-------SHVEDNSPHVARIAIRGQIEDS-----QEL 53
           +K + ++++ +++   +VY S+        +    +  H+  I I G+I DS        
Sbjct: 30  RKRRWKWIIRAIILAVLVYSSYKIVSVAKTTEASKDKEHIGLIDINGEIADSSSASADNF 89

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASA 110
            + IE+  R     ALIV ++SPGGS    E I+  +   + +K          +M ASA
Sbjct: 90  TKGIEKAYRSKGLKALIVRINSPGGSPVQAEYIYNVLQYYKSLKPNIKTYAVCVDMCASA 149

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
            Y ++  ++ I A+  S+VGSIGVL+        L KLG+S +   S   KA   PFS  
Sbjct: 150 AYYVAVGADEIYASPASMVGSIGVLYNGFGFVDALQKLGISRRLQTSGVNKAFLDPFSPT 209

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                + +Q ++D  +  F+  V E R            G  WTG +A   GLID     
Sbjct: 210 TEFQKEKLQTMLDIVHKQFITRVKEGRGNRLHVDDETFSGLFWTGEQALASGLIDGYASS 269

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
            ++ + +        I  I D+   +N +    KNL  +  + D +P++  
Sbjct: 270 GQLAREVIK------ITDIVDYTYKQNVFDRLTKNLGTA--MADELPVILG 312


>gi|312962571|ref|ZP_07777061.1| peptidase S49, SppA [Pseudomonas fluorescens WH6]
 gi|311283151|gb|EFQ61742.1| peptidase S49, SppA [Pseudomonas fluorescens WH6]
          Length = 327

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 122/294 (41%), Gaps = 18/294 (6%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIE 58
           +  K+ T   +L ++ L              + + A I +RG I D     +  ++  + 
Sbjct: 41  IFFKLLTFTYLLLMLALFSPLMDMEKSATRGAHYTALIEVRGVIADKEPASADNIVGSLR 100

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAGYLIS 115
               D     +I+ ++SPGGS      ++  I++   +     +   + ++ AS  Y I+
Sbjct: 101 AAFEDPKVKGVILRINSPGGSPVQSGYVYDEIRRLRGLHPDIKLYAVISDLGASGAYYIA 160

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I A + SLVGSIGV          ++KLGV  ++  S   KA   PF        
Sbjct: 161 SAADQIYADKASLVGSIGVTAAGYGFVGTMEKLGVERRTYTSGEHKAFLDPFQPQKADET 220

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
           Q  Q V+D+++  F+  V + R           L  G IW+G +A  +GLID +G    V
Sbjct: 221 QFWQGVLDTTHRQFIASVKQGRGDRLKDKEHPELFSGLIWSGEQALPLGLIDGLGSASSV 280

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
            + +         + + D+   ++ +    K L  S  + + + L    +   L
Sbjct: 281 ARDVIG------EKDLVDFTVEESPFDRFSKKLGAS--VAEKLALYMGFQGPSL 326


>gi|149175995|ref|ZP_01854612.1| SppA [Planctomyces maris DSM 8797]
 gi|148845149|gb|EDL59495.1| SppA [Planctomyces maris DSM 8797]
          Length = 343

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 129/269 (47%), Gaps = 8/269 (2%)

Query: 27  WSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           + +  +  S  +A I+I G I    ++ ++E I+    D     +++ + SPGG      
Sbjct: 65  FETGDQFASDKIAIISITGTIMPPFTERILESIKTAHEDKQVKGILLEIDSPGGLVADSH 124

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI---IVAAETSLVGSIGVLFQYPYV 141
            I+  + +++ +KP++  +  MAAS GY ++  +     I A  T+  GS+GV+     +
Sbjct: 125 QIYHRLVELRKKKPIVVSMKRMAASGGYYVAMGAGEEGVIFAEPTTWTGSLGVIIPRFDL 184

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI-P 200
               +K+GV    +K+   K   +PF E+  +   +   ++D SY  F+ +++++R    
Sbjct: 185 SGLAEKVGVVSDPLKTGEFKDALNPFREMTQRERDIWDHILDESYQRFLNIITDNRKDLD 244

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
           Y++   L+ G+I+   +A++ GLID +G QE+    L  +   + +R I+  +P      
Sbjct: 245 YEQVKKLATGQIYPATDARENGLIDEIGYQEDALARLQEMTNLKKVRVIRYRHPV--TLA 302

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
             L   + +S +E+    +  + V     
Sbjct: 303 DILLGSAEASQVENRKQALLDSTVPRAMY 331


>gi|302340483|ref|YP_003805689.1| signal peptide peptidase SppA, 36K type [Spirochaeta smaragdinae
           DSM 11293]
 gi|301637668|gb|ADK83095.1| signal peptide peptidase SppA, 36K type [Spirochaeta smaragdinae
           DSM 11293]
          Length = 791

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 129/270 (47%), Gaps = 25/270 (9%)

Query: 37  HVARIAIRGQI----------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
            +A I + G I            +   +  I     DDS  A+++ ++S GG   A ++I
Sbjct: 503 TIAIINLTGNIHSGEGVPGESVGADTTVRSITLAREDDSIDAIVLRINSGGGGLLASDSI 562

Query: 87  FRAIQKV---KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
            RA+ +    +N KPV+  +  MAAS  Y I+  +N++ A   ++ GSIGV+   P +  
Sbjct: 563 ARAVSRTVSGENAKPVVVSMGSMAASGAYYIAARANVVFAYPETMTGSIGVVAITPDISR 622

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L++  +++++VK SP     SP+  +  +  + ++ ++ S Y  FV  V++ R++  + 
Sbjct: 623 LLEEHKIAVETVKQSPEADFGSPYRPLLAEEREKIKAMIASGYDHFVENVADGRDMKREN 682

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ GR+W+G+ A++ GL+D +GG +   +    L   Q   ++ D+  P+       
Sbjct: 683 VERIAQGRVWSGSAAQEKGLVDEIGGMDAAVKRAAELSGRQGAIELADYTIPERILRLPF 742

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
                       +P    T   GL +VW P
Sbjct: 743 ------------LPPSLVTAYHGLGSVWLP 760



 Score = 68.9 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 80/213 (37%), Gaps = 7/213 (3%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           +E I  +  ++ D     +I     P  S      +   ++  + +   +    + A + 
Sbjct: 288 REHIRSLNELADDPLVDGIIFVNEHPASSLSVARELLVPLKHFREKGKKVMFYFDTADTD 347

Query: 111 GYLISCASN-IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
            YL++ A    I       V   GV     Y   FLD  G+  ++ +S P K+    F+E
Sbjct: 348 DYLLAAACGAEIYLHPEGSVDLKGVSVTRSYFATFLDTYGIKFENFRSHPYKSGFDTFTE 407

Query: 170 --VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY--DKTLVLSDGRIWTGAEAKKVGLID 225
             +     + +  +V        +L+ E R      D   +L+ G     + A   GLID
Sbjct: 408 GGMREPEREELTVLVADMERAVAQLLQEGRGDRLAGDAGKILAGGPYLRASRALDAGLID 467

Query: 226 VVGGQEEVWQSL--YALGVDQSIRKIKDWNPPK 256
            +  ++E+  ++         +    +DWN P+
Sbjct: 468 KLLYRDEIEDAMDVVETYELPAKSVRRDWNDPR 500


>gi|16800695|ref|NP_470963.1| hypothetical protein lin1627 [Listeria innocua Clip11262]
 gi|16414114|emb|CAC96858.1| lin1627 [Listeria innocua Clip11262]
          Length = 337

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/280 (25%), Positives = 132/280 (47%), Gaps = 19/280 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76
            E     +A +++ G I+D+ +               ++++E++  DD    +++ ++SP
Sbjct: 56  EEGGDDTIAVLSVDGTIQDTGDSGSLFGDAGYDHSFFMQQLEQVRNDDYIQGVLLYVNSP 115

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG       I   I +++  +  P    +  MAAS GY IS  ++ I A++ +L GS+GV
Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           + Q       + KLGVS  ++KS   K   S    +     ++MQ ++D SY+ FV++V+
Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           + R +  +K   ++DGRI+ G +AK+ GLID  G QE+  ++L           I+   P
Sbjct: 236 KGRGMSAEKVRKIADGRIYDGRQAKENGLIDEFGYQEDALEALKKEQGLADATVIQYDVP 295

Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291
                   +    IS   + +   I L    K   +  ++
Sbjct: 296 EDFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYLY 335


>gi|47096798|ref|ZP_00234380.1| peptidase, U7 family [Listeria monocytogenes str. 1/2a F6854]
 gi|254898248|ref|ZP_05258172.1| hypothetical protein LmonJ_00495 [Listeria monocytogenes J0161]
 gi|254912259|ref|ZP_05262271.1| peptidase [Listeria monocytogenes J2818]
 gi|254936586|ref|ZP_05268283.1| peptidase [Listeria monocytogenes F6900]
 gi|47014831|gb|EAL05782.1| peptidase, U7 family [Listeria monocytogenes str. 1/2a F6854]
 gi|258609182|gb|EEW21790.1| peptidase [Listeria monocytogenes F6900]
 gi|293590236|gb|EFF98570.1| peptidase [Listeria monocytogenes J2818]
          Length = 337

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 71/280 (25%), Positives = 133/280 (47%), Gaps = 19/280 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76
            E  +  +A +++ G I+D+ +               ++++E++  DD+   +++ ++SP
Sbjct: 56  EEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLEQVRNDDNIQGVLLYVNSP 115

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG       I   I +++  +  P    +  MAAS GY IS  ++ I A++ +L GS+GV
Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           + Q       + KLGVS  ++KS   K   S    +     ++MQ ++D SY+ FV++V+
Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           + R +  ++   ++DGRI+ G +AK+ GLID  G QE   ++L           I+   P
Sbjct: 236 QGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQENALEALKKEQGLAGATVIQYDAP 295

Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291
                   +    IS   + +   I L    K   +  ++
Sbjct: 296 GDFSSLFSVTAQKISGQNADISQLIKLTGTLKAPRMMYLY 335


>gi|241763832|ref|ZP_04761877.1| peptidase S49 [Acidovorax delafieldii 2AN]
 gi|241366876|gb|EER61290.1| peptidase S49 [Acidovorax delafieldii 2AN]
          Length = 353

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 123/288 (42%), Gaps = 13/288 (4%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERIS 61
             +  +++++L+      +  +S    ++PH A + I+G+I    E     ++  +    
Sbjct: 71  FFRLTWLLVALLVAWAALYQSTSGTSKSAPHTAVVDIKGEIASGAEASAELVVAAMRSAL 130

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASN 119
            D+ + AL++ ++SPGGS      I   I ++K +  KPV   V E  ASA Y I+ A++
Sbjct: 131 EDEGSQALVLLINSPGGSPVQAGIINDEIVRLKAKYNKPVYAVVEETCASAAYYIAAAAD 190

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179
            I   + S+VGSIGVL         ++KLGV  + + +   K    PFS    K      
Sbjct: 191 EIFVDKASIVGSIGVLMDGFGFTGTMEKLGVERRLLTAGENKGFLDPFSPQTEKQRAYAL 250

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
            ++D  +  F+ +V   R      T     G  WTG +A ++GL D +G  + V + +  
Sbjct: 251 TMLDQIHQQFIGVVKAGRGDRLKPTPETFSGLFWTGQQAIEMGLADKLGSLDYVAREVVK 310

Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
                    I D+   +N     +K    +        L     V  L
Sbjct: 311 ------AEDIIDYTRRENVAERLVKRFGAAMGAGALKALSASNAVPLL 352


>gi|225025425|ref|ZP_03714617.1| hypothetical protein EIKCOROL_02323 [Eikenella corrodens ATCC
           23834]
 gi|224941709|gb|EEG22918.1| hypothetical protein EIKCOROL_02323 [Eikenella corrodens ATCC
           23834]
          Length = 321

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 66/275 (24%), Positives = 122/275 (44%), Gaps = 18/275 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSW---SSHVEDNSPHVARIAIRGQIEDSQE----LIERIER 59
           K+  R ++++ + L +        S +     PH A I + G I   +     L + +E 
Sbjct: 39  KLIFRLLLIAFLALYLFAIFGNIGSLNPAAAGPHTAVIRLEGAITAGENQAGKLRQGLEA 98

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK---PVITEVHEMAASAGYLISC 116
             ++     +I+  +SPGGS       +R I++++      PV     +M AS  Y I+ 
Sbjct: 99  AYKNKQVRGIIIRANSPGGSPVVSGVAYREIRRLRAEHPGIPVYVVAEDMCASGCYYIAA 158

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
           A++ I A ++S+VGSIGV+     +   +  +G+  +   +   K    PFS   P+   
Sbjct: 159 AADKIYADQSSIVGSIGVVGSSFDLTGLMHNMGIQRRQRTAGSNKGMGDPFSPETPEQTA 218

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
           + Q ++D  +  F++ V + R    ++     L  GR++TG EA K GLID +G    V 
Sbjct: 219 IWQGMLDDIHQQFIKAVRDGRGKRLNEADNPDLFSGRVYTGNEALKTGLIDGLGDIYSVS 278

Query: 235 QSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           + +          ++ D+ P  +      K +  S
Sbjct: 279 RDIIK------APELVDYTPADDISRLFSKGVGAS 307


>gi|325924321|ref|ZP_08185865.1| signal peptide peptidase SppA, 67K type [Xanthomonas gardneri ATCC
           19865]
 gi|325545186|gb|EGD16496.1| signal peptide peptidase SppA, 67K type [Xanthomonas gardneri ATCC
           19865]
          Length = 632

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 123/268 (45%), Gaps = 13/268 (4%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           D+ P VA +   G+I            +     + +   D+   A+++ + SPGG  +A 
Sbjct: 330 DSRPQVAVVVAAGEISGGEQPAGRIGGESTAALLRQARDDEEVKAVVLRVDSPGGEVFAS 389

Query: 84  EAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I R +  + +  KPV+  + ++AAS GY IS  ++ I A  +++ GSIG+    P + 
Sbjct: 390 EQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGSIGIFGMVPNLT 449

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LDK+GV    V ++           ++P A Q++Q V++  Y  F   V+++R+   D
Sbjct: 450 RALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTGKVAQARHQSVD 509

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR-KIKDWNPPKNYWFC 261
               ++ GR+W+GA+AK+ GL+D  GG +E              + +++    P   +  
Sbjct: 510 AIDKVARGRVWSGAQAKQHGLVDAFGGMQEAVADAADRAKLSKGKFRVRYVEKPATPFSQ 569

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289
            +   + S +    +        + + A
Sbjct: 570 FMSGFAGSRMGAWMLG--DSAMARAMLA 595



 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 100/288 (34%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRGQIEDS------ 50
           M F  + I        L  + +++    +  +   P        I   G + +       
Sbjct: 21  MNFTRRLIFNLAFFGFLFLMLLLFVVAIARGDGTKPLAERTTLVINPEGTLVEQFSADPV 80

Query: 51  ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQ 91
                             ++L+  IE   +D     ++++L     S +A +  +  A+Q
Sbjct: 81  SRSLAKAVGDKSAEEVQLRDLVRVIEAAGKDRKIERVLLNLDKFQPSGFASQREVAAALQ 140

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGV 150
           K++     I    E  +   YL++  +N +       V   G+  ++  + +   DKLGV
Sbjct: 141 KLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGV 200

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK----T 204
            +   +    K+   P+     +  A +     ++  +  ++  V  +R +   +     
Sbjct: 201 DVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWQRYLADVGTARKLTPAQLTAGI 260

Query: 205 LVLSDGRIWTGAE----AKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
             L +G    G +    A +  L+D +  +EEV   L   GV  S   
Sbjct: 261 DTLPEGVTAAGGDLAKFALQQKLVDGLKTREEVDALLTKRGVADSDAD 308


>gi|33863632|ref|NP_895192.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus str. MIT 9313]
 gi|33635215|emb|CAE21540.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus str. MIT 9313]
          Length = 270

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/265 (25%), Positives = 131/265 (49%), Gaps = 6/265 (2%)

Query: 33  DNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            +   +A I I G I  +  + +++ I+ +   +   AL++ + SPGG+    + I  A+
Sbjct: 8   KSRRRIAHITIDGAISGATRERVLKAIKEVEERE-FPALLLRIDSPGGTVGDSQEIHAAL 66

Query: 91  QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
            +++ +   V+     ++AS G  +  A+  IVA   ++ GSIGV+ +   +   L+++G
Sbjct: 67  LRLREKGCHVVASFGNVSASGGVYVGVAAEKIVANPGTITGSIGVILRGNNLSKLLERIG 126

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +  ++VKS   K   SP   +  +  Q++Q ++DSSY  FV  V+E R++  ++    +D
Sbjct: 127 IRFETVKSGTYKDILSPDRALTAEERQLLQSLIDSSYEQFVNAVAEGRHLSAEEVRNFAD 186

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFCDLKNLSI 268
           GR+++G +A ++GL+D +G +E   +    L        +      PK      L    +
Sbjct: 187 GRVFSGTQAHELGLVDELGDEEHARKLAAKLADLDEANTQTIKLGRPKKRIAGFLPGSKL 246

Query: 269 SSLLEDTIPLMKQTKVQGLWAVWNP 293
            S L + + L      Q LW ++ P
Sbjct: 247 LSKLAEFLNLELGNNGQVLW-LFLP 270


>gi|15607042|ref|NP_214424.1| proteinase IV [Aquifex aeolicus VF5]
 gi|2984291|gb|AAC07815.1| proteinase IV [Aquifex aeolicus VF5]
          Length = 283

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 128/238 (53%), Gaps = 5/238 (2%)

Query: 37  HVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-N 95
            +A + + G I +   L+ +IER+    +  AL++ + SPGGS  A + I+RAI++ K  
Sbjct: 33  RIAVLKLSGVIVNPYPLVNKIERLKDSKNVVALVLRVDSPGGSVGASQEIYRAIERFKSA 92

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
            KPV+  +  +AAS GY +S A N I A E ++ GSIGV+ Q+   K  ++KLG+   ++
Sbjct: 93  GKPVVISMGNVAASGGYYVSAAGNYIFANEGTITGSIGVIIQHVAYKKLVEKLGIEATAI 152

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR--NIPYDKTLVLSDGRIW 213
           K+   K   SPF E+  +  + +Q++V+ +   F++ + + R   I  +K   ++DGRI+
Sbjct: 153 KTGKFKDTLSPFRELTQEEKEYLQNLVNEALEQFIQAILKYRSNKISEEKLREIADGRIF 212

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           TG +A ++GL+D +G   +  +    L   +  + +  +   +      L    +  +
Sbjct: 213 TGRQALELGLVDELGSLYDAIEKAKELSGYRDAKPV--FIQEEKSLLKRLVGADLEEI 268


>gi|121613641|ref|YP_999794.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|167004769|ref|ZP_02270527.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|1655731|gb|AAC44524.1| PspA [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87249010|gb|EAQ71972.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 298

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 66/275 (24%), Positives = 131/275 (47%), Gaps = 2/275 (0%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64
           +K I T +    L+ + +     S++   N  ++ RI ++G+I DS  ++E+I     D 
Sbjct: 15  IKFINTYFKTFVLLLIVIWILMPSANSSSNLANLERIDLKGEIFDSSAVLEKIINAKNDS 74

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
           +   ++  + SPGG+      +  AI+ +K +KPV+       AS  YL    +N I+A 
Sbjct: 75  NIKGVLFVIDSPGGAFAPSMELALAIKDLKIKKPVLVYASGTMASGSYLAGVGANKILAN 134

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             S +GSIGV+ Q   +    +KLG+  +++++   K+  +     N      +Q ++D 
Sbjct: 135 PASFIGSIGVIMQGADLSGLANKLGIKEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQ 194

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           SY  F   V++ R +  +K    ++ R++  A+AK++GLID +   E   + L  L    
Sbjct: 195 SYDLFTGFVAKERALDLNKKDQWANARVFLAAKAKELGLIDELSNYENAKKELEKLANVS 254

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
           +   +       + +   L+  + S + +  I ++
Sbjct: 255 N--PVWKEEDKIDKFLNRLEGQTSSLISKSLIEIV 287


>gi|294624143|ref|ZP_06702878.1| protease IV [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292601561|gb|EFF45563.1| protease IV [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 633

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/268 (25%), Positives = 122/268 (45%), Gaps = 13/268 (4%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           D+ P VA +   G+I            +     + +   DD   A+++ + SPGG  +A 
Sbjct: 331 DSRPQVAVVVAAGEISGGEQPAGRIGGESTAALLRQARDDDDVKAVVLRVDSPGGEVFAS 390

Query: 84  EAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I R +  + +  KPV+  + ++AAS GY IS  ++ I A  +++ GSIG+    P + 
Sbjct: 391 EQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGSIGIFGMVPNLT 450

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LDK+GV    V ++           ++P A Q++Q V++  Y  F   V+++R+   D
Sbjct: 451 RALDKIGVHTDGVATTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTGKVAQARHQSVD 510

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261
               ++ GR+W+GA+AK+ GL+D  GG  E            +   +++    P   +  
Sbjct: 511 AIDKVARGRVWSGAQAKERGLVDAFGGMSEAVADAADRAKLSRGKFRVRYVEKPATPFSQ 570

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289
            +   + S +    +        + L A
Sbjct: 571 FMSGFAGSRMGAWMLS--DSGMARALLA 596



 Score = 66.6 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 81/208 (38%), Gaps = 12/208 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQKVKNRKPVITEVHEMAAS 109
           ++L+  IE   +D     ++++L     S +A +  +  A+QK++     I    E  + 
Sbjct: 99  RDLVRVIEAAGKDRKIERVLLNLDKLQPSGFASQREVAAALQKLRASGKQIVAFSESMSQ 158

Query: 110 AGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167
             YL++  +N +       V   G+  ++  + +   DKLGV +   +    K+   P+ 
Sbjct: 159 GQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGVDVHLFRVGEYKSAAEPYI 218

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV--------LSDGRIWTGAEA 218
               +  A +     ++  +  ++  V  +R +   +           ++         A
Sbjct: 219 LDAASADAKEADLFWMNDVWRRYLADVGTARKLSPAQLAAGIDTLPEGVAAAGGDLAKFA 278

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSI 246
            +  L+D +  +EEV   L   GV  S 
Sbjct: 279 LQQKLVDGLKTREEVDALLVQRGVADSD 306


>gi|313633075|gb|EFR99981.1| putative signal peptide peptidase SppA [Listeria seeligeri FSL
           N1-067]
          Length = 337

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 138/299 (46%), Gaps = 25/299 (8%)

Query: 18  VTLTVVYFSWSSH------VEDNSPHVARIAIRGQIEDSQE--------------LIERI 57
           + +    F+ ++        +     +A +++ G I+D+ E               ++++
Sbjct: 37  IAVIDTLFAGTNELTETVIEKAGPSKIAVLSVDGTIQDTGESTSLLGSTGYNHSFFMDQL 96

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLIS 115
           E++  D+S   +++ ++SPGG       I   I +++  +  P    +  MAAS GY IS
Sbjct: 97  EQVRDDESIKGVLLYVNSPGGGVMESAQIRDKILQIQKERSIPFYVSMGSMAASGGYYIS 156

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
             ++ I A++ +L GS+GV+ Q       + KLG++  ++KS   K   S    +     
Sbjct: 157 APADKIFASKETLTGSLGVIMQGYDYSELMKKLGITDNTIKSGAHKDIMSATRPMTEDEK 216

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           ++MQ ++D SY+ FV++V+  R +  ++   ++DGRI+ G +AK+ GLID  G QE+   
Sbjct: 217 KIMQSMIDDSYNEFVQVVASGRGMSEEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALA 276

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291
           +L       +   I+   P        +    +S   + +   I L    +   +  ++
Sbjct: 277 ALKKDEKLSNATVIQYDEPTSFSSLFSVAAQKMSGQNADISQLIKLTGTLQAPRMMYLY 335


>gi|329298719|ref|ZP_08256055.1| protease 4 [Plautia stali symbiont]
          Length = 618

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 123/283 (43%), Gaps = 22/283 (7%)

Query: 21  TVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIV 71
             +Y+           ++A I   G I D +E            +I     DD   A+++
Sbjct: 311 VSIYYYNVKQPTQQDGNIAVILASGAIMDGEESAGNVGGDTTAAQIRDARLDDKIKAIVL 370

Query: 72  SLSSPGGSAYAGEAIFRAIQK-VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
            ++SPGGS  A EAI   +       KPV+  +  MAAS GY IS  ++ IVAA ++L G
Sbjct: 371 RVNSPGGSVTASEAIREELAAAHDAGKPVVVSMGGMAASGGYWISTPADYIVAAPSTLTG 430

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIG+      V+  L  +GV    V +SP+    +  +        +MQ  +++ Y  FV
Sbjct: 431 SIGIFGVINTVENSLSSIGVHSDGVATSPLADVSTTKALPTEAQQ-LMQLTIENGYRNFV 489

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
            LV+ SR+    +   ++ G +WTG++AK  GL+D +G  ++       L          
Sbjct: 490 GLVAASRHKTPQQIDAIAQGHVWTGSDAKANGLVDALGDFDDAVAKAAELAKVA------ 543

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
               P+  W+ D   +    LL + +    Q  +     VW P
Sbjct: 544 ---KPELSWYHDDPGMI--DLLLNQMNASAQAVLPAALKVWLP 581



 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 112/317 (35%), Gaps = 46/317 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVY--FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + F+ + I   ++++ ++    ++   S +S  E       ++ + G + D         
Sbjct: 19  LNFIREFILNLFLIVLILAGVGIWLQLSSASSSEPVQQGALKVDLSGVLVDKPSVSNRLS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               ++++ I +   D + T +++ L    GS     + + +A+
Sbjct: 79  RISRQLLGASSDRLQENSLFDVVDAIRQAKSDKNITGMVLDLRDFAGSDQPSLQYVGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    I  + +  + A Y ++  +  +  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDAGKPIFALGDSYSQAQYYLASYATKVYLSPQGTVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           S    +    K+   PF   +++P+A       V   +  ++  VS +R I   +    +
Sbjct: 199 SSHVFRVGTYKSAVEPFLRDDMSPEARDADGRWVGQLWQNYLNTVSANRQITPQQLFPGA 258

Query: 209 DGRI--------WTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNP 254
            G I         T   A +  L+DV+  +    + L           D     I  +N 
Sbjct: 259 AGIISGLQEVQGDTAKYALENKLVDVLDSRAAADRELVKTFGWDKASNDYRNVSIYYYNV 318

Query: 255 PKNYWFCDLKNLSISSL 271
            +         + ++S 
Sbjct: 319 KQPTQQDGNIAVILASG 335


>gi|289578008|ref|YP_003476635.1| signal peptide peptidase SppA, 36K type [Thermoanaerobacter
           italicus Ab9]
 gi|289527721|gb|ADD02073.1| signal peptide peptidase SppA, 36K type [Thermoanaerobacter
           italicus Ab9]
          Length = 305

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 84/271 (30%), Positives = 139/271 (51%), Gaps = 13/271 (4%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL----------IERIERISRDDS 65
           S+V++ V        V   S  +  I I G I  +  +          +E+I +   D++
Sbjct: 19  SIVSMFVSMPQQDKGVATASNTIGVIMIEGVIGQTTNILGIPQNINDPVEQIRKAQEDNA 78

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP-VITEVHEMAASAGYLISCASNIIVAA 124
             A++V ++SPGGSA     I++ ++K+K     +I  + + AAS GY+++ A +IIVA 
Sbjct: 79  VRAVVVKINSPGGSAAKSIEIYKELKKLKKTGKKIIVSMGDAAASGGYMVAAAGDIIVAN 138

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             ++ GSIGV+ QY   +   DKLG+   ++KS P K   SP  ++ P+  +++Q V++ 
Sbjct: 139 PATITGSIGVIMQYTNYEGLYDKLGLKEITIKSGPYKDIGSPTRDLTPEEKKILQGVIED 198

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           ++  F+ +VSE R +P DK   L+DGRI+TG +A KVGL+D +G   +           Q
Sbjct: 199 TFQQFLEIVSEGRKMPIDKVKELADGRIFTGRQALKVGLVDKLGDFYDAVDIAAKEAGMQ 258

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
               +K +  P       L      S LED 
Sbjct: 259 GKPVLKYYATP--TPLSILFGSGAKSNLEDI 287


>gi|22299347|ref|NP_682594.1| protease [Thermosynechococcus elongatus BP-1]
 gi|22295530|dbj|BAC09356.1| protease [Thermosynechococcus elongatus BP-1]
          Length = 274

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 133/252 (52%), Gaps = 10/252 (3%)

Query: 37  HVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
            +AR+ I G I  S  + +++ ++ I       AL+V + SPGG+    + I+ A+++++
Sbjct: 12  QIARLEITGAIAGSTRRRVLKALKTIEE-RGYPALLVRIDSPGGTVGDSQEIYAALKRLQ 70

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
           ++  ++     ++AS G  I   +  I+A   ++ GSIGV+ +   ++  LDK+GVS K 
Sbjct: 71  SKMKIVASFGNISASGGVYIGMGAQHIMANPGTITGSIGVILRGNNLQRLLDKVGVSFKV 130

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
           +KS P K   +   ++  + ++++QD++D+SY  FV+ V+E RN+  +     +DGR++T
Sbjct: 131 IKSGPYKDILAFDRDLTEEEIRILQDLIDTSYQQFVQTVAEGRNLDVETVRSFADGRVFT 190

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273
           G +A  +GL+D +G +E+  + L  L   D    K++    PK+               +
Sbjct: 191 GEQALALGLVDRLGTEEDARRWLAELAGLDPDKTKVQTIEEPKSPLARLFPRQ------Q 244

Query: 274 DTIPLMKQTKVQ 285
           +  P   Q  + 
Sbjct: 245 ERFPFPWQAGLD 256


>gi|294663994|ref|ZP_06729409.1| protease IV [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292606238|gb|EFF49474.1| protease IV [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 633

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/268 (25%), Positives = 122/268 (45%), Gaps = 13/268 (4%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           D+ P VA +   G+I            +     + +   DD   A+++ + SPGG  +A 
Sbjct: 331 DSRPQVAVVVAAGEISGGEQPAGRIGGESTAALLRQARDDDDVKAVVLRVDSPGGEVFAS 390

Query: 84  EAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I R +  + +  KPV+  + ++AAS GY IS  ++ I A  +++ GSIG+    P + 
Sbjct: 391 EQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGSIGIFGMVPNLT 450

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LDK+GV    V ++           ++P A Q++Q V++  Y  F   V+++R+   D
Sbjct: 451 RALDKIGVHTDGVATTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTGKVAQARHQSVD 510

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261
               ++ GR+W+GA+AK+ GL+D  GG  E            +   +++    P   +  
Sbjct: 511 AIDKVARGRVWSGAQAKERGLVDAFGGMSEAVADAADRAKLSRGKFRVRYVEKPATPFSQ 570

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289
            +   + S +    +        + L A
Sbjct: 571 FMSGFAGSRMGAWMLS--DSGMARALLA 596



 Score = 66.6 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 81/208 (38%), Gaps = 12/208 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQKVKNRKPVITEVHEMAAS 109
           ++L+  IE   +D     ++++L     S +A +  +  A+QK++     I    E  + 
Sbjct: 99  RDLVRVIEAAGKDRKIERVLLNLDKLQPSGFASQREVAAALQKLRASGKQIVAFSESMSQ 158

Query: 110 AGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167
             YL++  +N +       V   G+  ++  + +   DKLGV +   +    K+   P+ 
Sbjct: 159 GQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGVDVHLFRVGEYKSAAEPYI 218

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV--------LSDGRIWTGAEA 218
               +  A +     ++  +  ++  V  +R +   +           ++         A
Sbjct: 219 LDAASADAKEADLFWMNDVWRRYLADVGTARKLSPAQLAAGIDTLPEGVAAAGGDLAKFA 278

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSI 246
            +  L+D +  +EEV   L   GV  S 
Sbjct: 279 LQQKLVDGLKTREEVDALLVQRGVADSD 306


>gi|289434866|ref|YP_003464738.1| peptidase, U7 family [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171110|emb|CBH27652.1| peptidase, U7 family [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 337

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/280 (23%), Positives = 132/280 (47%), Gaps = 19/280 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76
            +     +A +++ G I+D+ E               ++++E++  D+S   +++ ++SP
Sbjct: 56  EKAGPSKIAVLSVDGTIQDTGESTSLLGSTGYNHSFFMDQLEQVRDDESIKGVLLYVNSP 115

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG       I   I +++  +  P    +  MAAS GY IS  ++ I A++ +L GS+GV
Sbjct: 116 GGGVMESAQIRDKILQIQKERSIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           + Q       + KLG++  ++KS   K   S    +     ++MQ ++D SY+ FV++V+
Sbjct: 176 IMQGYDYSELMKKLGITDNTIKSGAHKDIMSATRPMTEDEKKIMQSMIDDSYNEFVQVVA 235

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
             R +  ++   ++DGRI+ G +AK+ GLID  G QE+   +L       +   I+   P
Sbjct: 236 SGRGMSEEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALAALKKDEKLSNATVIQYDEP 295

Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291
                   +    +S   + +   I L    +   +  ++
Sbjct: 296 TSFSSLFSVAAQKMSGQNADISQLIKLTGTLQAPRMMYLY 335


>gi|153829820|ref|ZP_01982487.1| protease IV [Vibrio cholerae 623-39]
 gi|148874679|gb|EDL72814.1| protease IV [Vibrio cholerae 623-39]
          Length = 616

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 14/287 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           +       +       ++  +A +   G I D            +   +     D +  A
Sbjct: 307 IGYYEYKTTIKPTTLTDANDIAIVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   I+ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +  L+ LG+    V ++P  +     + +   A   +Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGLTTGLTQGAKDAIQLGIEHGYQ 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F+ LV+E R +       L+ GR+WT  +A+ +GL+D +G  ++       L      +
Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           +  +++   P   +  DL      SL  D +  +    +Q L   W 
Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSTLLPKSLQPLAVEWQ 591



 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 114/328 (34%), Gaps = 40/328 (12%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51
           + F+   +     +LS+  +  +Y    + +       A  + + G I +          
Sbjct: 19  ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            +++E +     D++ T L+++    P  +      I +AI + 
Sbjct: 79  FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF   +++  A +     +   +  +V  V+ +R I         +  
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEQF 258

Query: 212 I-----WTGAEA---KKVGLIDVVGGQEEVWQSLYALGVDQSIRK---IKDWNPPKNYWF 260
           +       G  A   KKVGL+D +  +++V Q+L              I  +        
Sbjct: 259 VTQLKEVNGDLAALSKKVGLVDELATRQQVRQTLAETFGSDGKDSYNAIGYYEYKTTIKP 318

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288
             L + +  +++  +  +M  ++ +G  
Sbjct: 319 TTLTDANDIAIVVASGAIMDGSQPRGTV 346


>gi|288957927|ref|YP_003448268.1| protease IV [Azospirillum sp. B510]
 gi|288910235|dbj|BAI71724.1| protease IV [Azospirillum sp. B510]
          Length = 585

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 80/287 (27%), Positives = 135/287 (47%), Gaps = 19/287 (6%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATAL 69
           Y + + +   N P +A I   G I   +               +++ IE  + D    A+
Sbjct: 278 YLAVAGNPNGNGPTIALINAVGTITGGESGKPATGGLSAGSDTIVQAIEEAADDPDVRAI 337

Query: 70  IVSLSSPGGSAYAGEAIFRAI-QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           +  + S GG+  A EAI RA+ +  ++ KPVI  + + AAS GY I+ A++ IVA+  +L
Sbjct: 338 LFRIDSGGGAVSASEAIRRALVRARQSGKPVIASMGDAAASGGYWIALAADRIVASPATL 397

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIGV+     +    DKLGV    V+S+      SP         + +  ++D +Y  
Sbjct: 398 TGSIGVVAGKFAIGGLSDKLGVHWDGVRSARNAGMWSPLRPFGDSESERLTAIIDDTYAN 457

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           F++ V+E+R +  D+   ++ GR+WTGA+A+ +GLID +GGQE+                
Sbjct: 458 FLQRVAEARRMTPDQARGIAKGRVWTGAQARDLGLIDDLGGQEQALILARTAAGLAPDAP 517

Query: 249 IK--DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
           +    + PPK+     L  L+    L   +      +++ L A   P
Sbjct: 518 VTLAPYPPPKSVTDELLDLLAGKGNLVGALAT--AAELRPLLAELRP 562



 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 91/269 (33%), Gaps = 22/269 (8%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + F ++      ++L    +TVV  +           V  + + G + +S          
Sbjct: 4   VRFFVRLFALIGLLLVGGAVTVVVLAVRHEPALPDAVVLELDLTGPLAESDGGRIDSLFE 63

Query: 52  ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT---- 101
                 ++++ ++   RD     ++             + +  AI++ ++          
Sbjct: 64  QRTTLRQVLDALDAGRRDPRVKGVLARFGDDAVGFAQTQELRGAIERFRSSGRFAVAFAE 123

Query: 102 -EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160
                   +  YL++ A + +       +G  G+  + P+ +  LD+LGV     +    
Sbjct: 124 EYGGAGPGNRAYLLASAFDEVWLQPMGTLGITGLSMELPFAREALDRLGVQPSFAQREEY 183

Query: 161 KAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEA 218
           K+    F+   + P   +MM+ +V    +  V  +++SR +         D       EA
Sbjct: 184 KSFAETFTTAGMTPANREMMEGLVADLSNQLVDGIAKSRRLAPATVRAAMDKAPLLSREA 243

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
                +D +G  +E          D +  
Sbjct: 244 LDQKFVDKLGYADEARDEALKRAGDGAET 272


>gi|218548665|ref|YP_002382456.1| protease 4 [Escherichia fergusonii ATCC 35469]
 gi|218356206|emb|CAQ88823.1| protease IV (signal peptide peptidase) [Escherichia fergusonii ATCC
           35469]
          Length = 711

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 69/281 (24%), Positives = 122/281 (43%), Gaps = 15/281 (5%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATAL 69
            ++   ++  + V+     +  +   G I D +E            +I     D    A+
Sbjct: 403 AISFYDYALKTPVKTPE-MIGVVFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAI 461

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           ++ ++SPGGS  A E I   +   K   KPV+  +  MAAS GY IS  +N I+A  ++L
Sbjct: 462 VLRVNSPGGSVTASEVIRSELAAAKAAGKPVVVSMGGMAASGGYWISTPANYIIANPSTL 521

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIG+      V+  LD +GV    V +SP+       S         MQ  +++ Y  
Sbjct: 522 TGSIGIFGVINTVENSLDSIGVHTDGVSTSPLANMSVTQSLPTEVQQM-MQLSIENGYKR 580

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           F+ LV+++R    ++   ++ G +WTG +AK  GL+D +G  ++       L        
Sbjct: 581 FITLVADARKSTPEQVDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWS 639

Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           I  +     ++   + ++S S  +   +P   Q  +    A
Sbjct: 640 INYYQDEPTFFDMVVDSMSGS--VRAMLPQAIQAMLPAPLA 678



 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 101/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKTR-YVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L L+ + +    S +   +  S     + I G I D         
Sbjct: 112 LNFVREMVLNLLFIFLVLIGVGIWMQVSSNGSSDSASRGALLLDISGVIVDKPSNNHRLG 171

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G+     + I +A+
Sbjct: 172 VIGRQLFGASSERLQENSLFDIVNTIRQAKDDSNITGIVLDLENFAGADQPSMQYIGKAL 231

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  + E      Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 232 REFRDSGKPVIAIGESYTQGQYYLASFANKIWLSPQGTVDLHGFATNGLYYKSLLDKLKV 291

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     V   +  ++  ++ +R I   +     
Sbjct: 292 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWVGELWQNYLNTIAANRQISAQQVFPGA 351

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A    L+D +G   +V ++L          K
Sbjct: 352 QAMIADLTKLGGDTAQYALDHKLVDALGSSADVEKALTKQFGWSKADK 399


>gi|330810999|ref|YP_004355461.1| peptidase [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
 gi|327379107|gb|AEA70457.1| putative peptidase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 329

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 63/278 (22%), Positives = 112/278 (40%), Gaps = 16/278 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIE 58
           +  K+ T   +   + L              S + A I I G I D     +  ++  + 
Sbjct: 43  IFFKLLTFTYLFVALALFTPLMDMEKSAVAGSAYTALINIEGMIADKEPASADNIVGSLR 102

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAGYLIS 115
               D     +++ ++SPGGS      ++  I   + +     V   + ++ AS  Y I+
Sbjct: 103 AAFEDSKVKGVVLRINSPGGSPVQSGYVYDEIVRLRALHPDIKVYAVISDLGASGAYYIA 162

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I A + SLVGSIGV          ++KLGV  +   S   K+   PF    P+  
Sbjct: 163 SAADQIYADKASLVGSIGVTAAGYGFVGTMEKLGVERRVYTSGEHKSFLDPFQPQKPEET 222

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
              Q V+D+++  F+  V + R           L  G +W+G +A  +GLID +G    V
Sbjct: 223 AFWQSVLDTTHKQFIASVKKGRGERLKDKEHPELFSGLVWSGEQALPLGLIDGLGSASSV 282

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
            + +         + + D+   ++ +    K L  S  
Sbjct: 283 ARDVIGQ------KDLVDFTIEESPFDRFSKKLGASIA 314


>gi|313499938|gb|ADR61304.1| Signal peptide peptidase SppA, 36K type [Pseudomonas putida BIRD-1]
          Length = 329

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/276 (24%), Positives = 128/276 (46%), Gaps = 16/276 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIE 58
           +  K+ T   +  ++ L             ++ H A + +RG I D     +  +++ + 
Sbjct: 43  IFFKLLTFVYLFGILALFSPLMDMDKAASRSASHTALVEVRGVIADQEAASADNIVKSLR 102

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT---EVHEMAASAGYLIS 115
              +DD   A+++ ++SPGGS      ++  I++++   P I     + ++ AS  Y I+
Sbjct: 103 EAFKDDKTKAVVMRINSPGGSPVQAGYVYDEIRRLRAEYPAIKLYAVIADLGASGAYYIA 162

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I A + SLVGSIGV          ++KLGV  ++  S   KA   PFS   P+  
Sbjct: 163 SAADEIYADKASLVGSIGVTAAGYGFVGTMEKLGVERRAYTSGEHKAFLDPFSPEKPEET 222

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
           +  Q V+D+++  F+ +V + R           L  G IW+G +AK +GL+D +G    V
Sbjct: 223 RFWQGVLDTTHQQFIAMVKQGRGERLKDKQHPELFSGLIWSGEQAKALGLVDGLGSASYV 282

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
            + +         +++ D+   ++ +    K +  S
Sbjct: 283 AREIVG------EKELVDFTVQESPFDRFSKRVGAS 312


>gi|187250455|ref|YP_001874937.1| signal peptide peptidase SppA, 36K type [Elusimicrobium minutum
           Pei191]
 gi|186970615|gb|ACC97600.1| Signal peptide peptidase SppA, 36K type [Elusimicrobium minutum
           Pei191]
          Length = 371

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 89/315 (28%), Positives = 145/315 (46%), Gaps = 32/315 (10%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSW-------------------SSHVEDNSPHVARIAIRGQ 46
           K   +  V+L  V+     +                     SS        VA I IRG 
Sbjct: 55  KNWLSVLVLLFFVSSISGLYIIFSGGICKKETKTESSLPRLSSQARHGETGVAVIRIRGV 114

Query: 47  IE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-- 94
           I            +  +  RI   +  D+  A+I+ ++SPGG+  A + I+ AI   +  
Sbjct: 115 ITEPQASSWRDQSASSIARRIRTTADKDNVKAIIIDINSPGGTVAAVQDIYNAILYARQV 174

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
             K V+    +++AS GY I+ A + IVA   +L GSIGV+FQ    +  ++K+GVS  +
Sbjct: 175 KNKKVVALFRDVSASGGYYIAVACDKIVAQPGTLTGSIGVIFQTGNFEGLMNKIGVSFST 234

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-NIPYDKTLVLSDGRIW 213
           +KS   K   SP+ ++  +   ++Q+++D SY+ F+ +V   R N+   +  V +DGRI+
Sbjct: 235 IKSGQHKDIGSPYRKMTEEERTLLQELIDDSYNQFLDVVKTGRPNMNPVELKVYADGRIF 294

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273
           TG +A  +GLID +GG+EE  +    L   +  + I +       W   L     S  L+
Sbjct: 295 TGRKAFSIGLIDALGGEEEALKIAGELADIKDPKIISNRPTTFREWLSSLDPEMSSKTLD 354

Query: 274 DTIPLMKQTKVQGLW 288
             I  +   KV  LW
Sbjct: 355 RQIEAISSPKVAYLW 369


>gi|148926874|ref|ZP_01810552.1| protease [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205356450|ref|ZP_03223214.1| protease [Campylobacter jejuni subsp. jejuni CG8421]
 gi|145844451|gb|EDK21559.1| protease [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205345637|gb|EDZ32276.1| protease [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 298

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 66/275 (24%), Positives = 130/275 (47%), Gaps = 2/275 (0%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64
           +K I T +    L+ + +     S++   N  ++ RI ++G+I DS  ++E+I     D 
Sbjct: 15  IKFINTYFKTFVLLLIVIWILMPSANSSSNLANLERIDLKGEIFDSSAVLEKIINAKNDS 74

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
           +   ++  + SPGG+      +  AI+ +K +KPV+       AS  YL    +N I+A 
Sbjct: 75  NIKGVLFVIDSPGGAFAPSMELALAIKDLKIKKPVLVYASGTMASGSYLAGVGANKILAN 134

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             S +GSIGV+ Q   +    +KLG+  +++++   K+  +     N      +Q ++D 
Sbjct: 135 PASFIGSIGVIMQGADLSGLANKLGIKEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQ 194

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           SY  F   V++ R +  +K    ++ R++  A+AK++GLID +   E   + L  L    
Sbjct: 195 SYDLFTGFVAKERALDLNKKDQWANARVFLAAKAKELGLIDELSNYENAKKELEKLANVS 254

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
           +   +       + +   L+  + S + +  I + 
Sbjct: 255 N--PVWKEEDKIDKFLNRLEGQTSSLISKSLIEIA 287


>gi|86154048|ref|ZP_01072249.1| PspA [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85842462|gb|EAQ59676.1| PspA [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 298

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 66/275 (24%), Positives = 130/275 (47%), Gaps = 2/275 (0%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64
           +K I T +    L+ + +     S++   N  ++ RI ++G+I DS  ++E+I     D 
Sbjct: 15  IKFINTYFKTFVLLLIVIWILMPSANSSSNLANLERIDLKGEIFDSSAVLEKIINAKNDS 74

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
           +   ++  + SPGG+      +  AI+ +K +KPV+       AS  YL    +N I+A 
Sbjct: 75  NIKGVLFVIDSPGGAFAPSMELALAIKDLKIKKPVLVYASGTMASGSYLAGVGANKILAN 134

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             S +GSIGV+ Q   +    +KLG+  +++++   K+  +     N      +Q ++D 
Sbjct: 135 PASFIGSIGVIMQGADLSGLANKLGIKEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQ 194

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           SY  F   V++ R +  +K    ++ R++  A+AK++GLID +   E   + L  L    
Sbjct: 195 SYDLFTGFVAKERALDLNKKDQWANARVFLAAKAKELGLIDELSNYENAKKELEKLANVS 254

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
           +   +       + +   L+  + S + +  I + 
Sbjct: 255 N--PVWKEEDKIDKFLNRLEGQTSSLISKSLIEIA 287


>gi|330861582|emb|CBX71777.1| protease 4 [Yersinia enterocolitica W22703]
          Length = 510

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/273 (24%), Positives = 123/273 (45%), Gaps = 18/273 (6%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
           +        +A +   G I D            L  +I +   D    A+I+ ++SPGGS
Sbjct: 210 TPTPQQGEQIAVLFANGAIMDGPQTPGNVGGDALAAQIRQARLDPKIKAVILRVNSPGGS 269

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +  ++   KP++  +  MAAS GY IS  +N I+A  ++L GSIG+    
Sbjct: 270 VSASELIRTELAALRAANKPLVVSMGGMAASGGYWISTPANYIIANPSTLTGSIGIFGVI 329

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  L+ +GV    V +SP+        ++ P+  QMMQ  +++ Y  F+ LV+ +R+
Sbjct: 330 NTFQNTLESIGVHTDGVATSPLANVSVT-KDLPPEFSQMMQINIENGYKTFIDLVASARH 388

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256
              ++   ++ G +W G +AK  GL+D +G  ++  + +  L   +   +    D     
Sbjct: 389 KTPEQVDQIAQGHVWIGIDAKNNGLVDQLGDFDDAVKKVAELAKLKTWQLNWFVD----- 443

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                DL    +S+ ++  +P   Q  +    +
Sbjct: 444 EPSLSDLIFGQMSASVQAMLPTAIQAWLPAPIS 476



 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 82/226 (36%), Gaps = 17/226 (7%)

Query: 63  DDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
           D++ T +++SL    G+     + I +A+++ ++    I  + E  +   Y ++  +N I
Sbjct: 1   DNNITGMVLSLGDFTGADQPSLQYIGKALREFRDSGKPIYAIGESYSQTQYYLASFANKI 60

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQ 179
             +    V   G      Y K  L+KL V+    +    K+   P    +++P A +   
Sbjct: 61  YLSPHGTVALHGFASNNLYYKSLLEKLKVTTNIFRVGTYKSAVEPMIRDDMSPAAREADT 120

Query: 180 DVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
             +   +  ++  V+ +R +  ++           L          A    L+D +  + 
Sbjct: 121 RWIGGLWQNYLTAVAANRQLTPEQLFPGGAGVVSGLQAAGGSQAQYALSSKLVDQLATRP 180

Query: 232 EVWQSLY------ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           E+   L           D +   I D+ P       +   +  ++ 
Sbjct: 181 EMENELVKAFGWDKKNNDFNYVSIYDYQPTPTPQQGEQIAVLFANG 226


>gi|238751644|ref|ZP_04613134.1| Protease 4 [Yersinia rohdei ATCC 43380]
 gi|238710206|gb|EEQ02434.1| Protease 4 [Yersinia rohdei ATCC 43380]
          Length = 616

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/273 (24%), Positives = 123/273 (45%), Gaps = 18/273 (6%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
           +        +A +   G I D            L  +I +   D    A+I+ ++SPGGS
Sbjct: 317 TPAPQQGEQIAVLFANGAIMDGPQTPGNVGGDALAAQIRQARLDPKIKAVILRVNSPGGS 376

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +  ++   KP++  +  MAAS GY IS  +N I+A  ++L GSIG+    
Sbjct: 377 VSASELIRSELAALRAANKPLVVSMGGMAASGGYWISTPANYIIANPSTLTGSIGIFGVI 436

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  L+ +GV    V +SP+        ++ P+  QMMQ  +++ Y  F+ LV+ +R+
Sbjct: 437 NTFQNSLESIGVHTDGVATSPLANVTVT-KDLPPEFSQMMQINIENGYKTFIDLVATARH 495

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256
              ++   ++ G +W G +AK  GL+D +G  ++  + +  L   +   +    D     
Sbjct: 496 KTPEQVDQIAQGHVWIGLDAKNNGLVDQLGDFDDAVKKVAELAKLKTWQLNWFVD----- 550

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                DL    +S+ ++  +P   Q  +    +
Sbjct: 551 EPSLSDLIFGQMSASVQAMLPAAIQAWLPAPLS 583



 Score = 82.7 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 97/293 (33%), Gaps = 44/293 (15%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIE 55
           +Y  + S   +       + + G + D                             +++E
Sbjct: 41  IYLQFQSKPAEPVKGALLVNLSGVVVDQPAVNNKLRQWGRELLGASSNRLQENSLFDIVE 100

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114
            +     D + T +++SLS   G+     + I +A+++ ++    I  + +    + Y +
Sbjct: 101 TLRLAKSDSNITGVVLSLSDFTGADQPSLQYIGKALREFRDTGKPIYAIGDSYNQSQYYL 160

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172
           +  +N I  +    V   G      Y K  L+KL V+    +    K+   P    +++P
Sbjct: 161 ASFANKIYLSPQGAVDLHGFASNNLYYKSLLEKLKVTTNIFRVGTYKSAVEPMIRDDMSP 220

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLI 224
            A +     +   +  ++  VS +R +  ++           L          A    L+
Sbjct: 221 AAREADSRWIGGLWQNYLTAVSANRQLTPEQLFPGAAGVISGLQAAGGSPAQYALNSKLV 280

Query: 225 DVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           D +  + EV   L           D +   I D+ P       +   +  ++ 
Sbjct: 281 DQLASRPEVETDLVKTFGWDKKNNDFNYISIYDYQPTPAPQQGEQIAVLFANG 333


>gi|307730546|ref|YP_003907770.1| peptidase S49 [Burkholderia sp. CCGE1003]
 gi|307585081|gb|ADN58479.1| peptidase S49 [Burkholderia sp. CCGE1003]
          Length = 334

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 14/275 (5%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSL 73
            +  V+      +  +  H A IA+ G+I      +++++   +E    D     +I+  
Sbjct: 64  VIWAVFDFSGDKLAASGRHTALIALDGEISADTRANAEDVAAALESAFDDAGTAGVILRC 123

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCASNIIVAAETSLVG 130
           +SPGGS      I+  +++++ + P I     V +M AS GY  + A + I   + S+VG
Sbjct: 124 NSPGGSPVQAGIIYDQMRRLRAKHPSIPLYVVVGDMCASGGYYAAAAGDKIYVDKASIVG 183

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGVL         +DKLG+  +   S   K    PFS   PK  Q  Q+++D  +  F+
Sbjct: 184 SIGVLMDSFGFTGLMDKLGIQRRLHTSGENKGFYDPFSPETPKMDQHAQEMLDQIHAQFI 243

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
             V + R     +T  +  G  WTG ++ ++GL D  G    V + L          +I 
Sbjct: 244 EAVRQGRGKRLHETPDMFSGLFWTGEKSVELGLADGFGDANYVARELIK------APEIV 297

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           D+   ++      +    +        L    K+ 
Sbjct: 298 DYTVKESITDRVARKFGAAVGSGAVHALALGGKLN 332


>gi|152992629|ref|YP_001358350.1| protease IV [Sulfurovum sp. NBC37-1]
 gi|151424490|dbj|BAF71993.1| protease IV [Sulfurovum sp. NBC37-1]
          Length = 284

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 133/268 (49%), Gaps = 2/268 (0%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63
            +K +   +  +  + + ++ F  +S  +    ++  I + G I D+ ++++ I++  +D
Sbjct: 8   FIKWLGDHFKGMLFLLILLIVFMPTSESKLKPANLQEIKLTGPIMDADKVLKEIDKARKD 67

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
           D    ++ +++SPGG+      I  AI+++K +KPVI     + AS  Y  S  +N I+A
Sbjct: 68  DDIKGVLFNVNSPGGAVPPSIEICHAIKELKEKKPVIAYASGIMASGSYYASIYANKIIA 127

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
              S+VGSIGV+ + P +   ++K+GV  + VK    K   +P  E  PK  + ++ +  
Sbjct: 128 NPGSIVGSIGVIMEAPNLHELMEKVGVGTQIVKQGEYKEAGTPTREWTPKEREELERLTK 187

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
            +Y  FV  V+++R +  + +   +D  I++   AKK GLID +  +    + + AL   
Sbjct: 188 DTYELFVSDVAKARGLDVNNSTAYADAHIFSSKRAKKAGLIDEIATKRSAKEQIAALAKV 247

Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           +    +         +F DL   SI  L
Sbjct: 248 KE--PVWKEKDKLESFFEDLSTKSILKL 273


>gi|254286923|ref|ZP_04961875.1| protease IV [Vibrio cholerae AM-19226]
 gi|150423073|gb|EDN15022.1| protease IV [Vibrio cholerae AM-19226]
          Length = 616

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 14/287 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           +       +       ++  +A +   G I D            +   +     D +  A
Sbjct: 307 IGYYEYKTTIKPTTLTDANDIAIVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   I+ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +  L+ LG+    V ++P  +     + +   A   +Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGLTTGLTQGAKDAIQLGIEHGYQ 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F+ LV+E R +       L+ GR+WT  +A+ +GL+D +G  ++       L      +
Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           +  +++   P   +  DL      SL  D +  +    +Q L   W 
Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSTLLPKSLQPLAVEWQ 591



 Score = 91.2 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 115/328 (35%), Gaps = 40/328 (12%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51
           + F+   +     +LS+  +  +Y    + +       A  + + G I +          
Sbjct: 19  ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            +++E +     D++ T L+++    P  +      I +AI + 
Sbjct: 79  FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203
             +    K+   PF   +++  A +     +   +  +V  V+ +R I          + 
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEEF 258

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK---IKDWNPPKNYWF 260
              L +      A +KKVGL+D +  +++V Q+L              I  +        
Sbjct: 259 VAQLKEVNGDLAALSKKVGLVDELATRQQVRQTLAETFGSDGKDSYNAIGYYEYKTTIKP 318

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288
             L + +  +++  +  +M  ++ +G  
Sbjct: 319 TTLTDANDIAIVVASGAIMDGSQPRGTV 346


>gi|157803726|ref|YP_001492275.1| cytidylate kinase [Rickettsia canadensis str. McKiel]
 gi|157784989|gb|ABV73490.1| cytidylate kinase [Rickettsia canadensis str. McKiel]
          Length = 305

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 139/263 (52%), Gaps = 4/263 (1%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
            +  N  ++A I I   I + ++  +++++I  D    ALIV+++SPGG+    E I+  
Sbjct: 47  PITGNEDYIASILIDEIIFEDEKRDKKLKKIIDDSHIKALIVNVNSPGGTVVGSEKIYNI 106

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           ++K+  +KPV+  +  MA S GYLIS   + I++   ++ GSIGV+ Q   +     KLG
Sbjct: 107 LRKISEKKPVVIVMGTMATSGGYLISLGGDYIISHNGTITGSIGVILQTAEITELAQKLG 166

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +   + KS  +KA P+P  ++       + + ++ +Y +F+ LVSE RN+P ++   L+D
Sbjct: 167 IKFNNFKSGELKAAPNPTEKLTQAVRIAIMENIEDTYDFFLELVSERRNLPIEEVKKLAD 226

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           GR+++G +A K+ L+D +G ++   + L  +    +   +KD+         ++      
Sbjct: 227 GRVYSGRQALKLKLVDSIGSEDTALKWLQEVKKINTNLLVKDYPLKAKPKLVEMIFEDFG 286

Query: 270 SLLEDTIPLMKQTKVQGLWAVWN 292
           S+     P   +  + G+ A++ 
Sbjct: 287 SIT----PNFFKNNLNGIKAIFQ 305


>gi|261209833|ref|ZP_05924135.1| protease IV [Vibrio sp. RC341]
 gi|260841131|gb|EEX67651.1| protease IV [Vibrio sp. RC341]
          Length = 616

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 126/287 (43%), Gaps = 14/287 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           V+      S S     N+  +A +   G I D            +   +     D +  A
Sbjct: 307 VSYYEYKASISPTTLPNASDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   I+ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +  L+ LG+    V ++P  +     + +   A   +Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGVTTGLTQGAKDAIQLGIEHGYQ 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F+ LV+E R +       ++ GR+WT  +A+ +GL+D +G  ++       L      +
Sbjct: 486 RFISLVAEKRGMTLKAVDDIAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAATLAQLDQYN 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           +  +++   P   +  DL    +   L   +  +    +Q L   W 
Sbjct: 546 LYWVEEPLTPAQQFLQDLLG-QVHVSLGLDVSTLLPKSLQPLAVEWQ 591



 Score = 95.8 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 115/328 (35%), Gaps = 40/328 (12%)

Query: 1   MEFVLKKIKTRYVMLSL-VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + F+   +     +LS+ +   +   + +     N      + + G I +          
Sbjct: 19  ITFIRLALTNLIFLLSIGIIYFIYIHADAPLPTINKSSALVLNLSGPIVEQSTHINPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            +++E +     D++ T L+++    P  +      I +AI + 
Sbjct: 79  FAGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203
             +    K+   PF   +++  A +     +   +  +V  V+ +R I          + 
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEEF 258

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK---IKDWNPPKNYWF 260
              L +      A +KKVGL+D +  +++V Q+L              +  +    +   
Sbjct: 259 VAQLKEVNGDLAALSKKVGLVDELATRQQVRQTLAETFGSDGKDSYNAVSYYEYKASISP 318

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288
             L N S  +++  +  +M  ++ +G  
Sbjct: 319 TTLPNASDIAVVVASGAIMDGSQPRGTV 346


>gi|261253430|ref|ZP_05946003.1| protease IV [Vibrio orientalis CIP 102891]
 gi|260936821|gb|EEX92810.1| protease IV [Vibrio orientalis CIP 102891]
          Length = 617

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 76/280 (27%), Positives = 131/280 (46%), Gaps = 13/280 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           +       S +   +     +A +   G I D                + +   DD   A
Sbjct: 308 IGFYEYQASVAPTFDLAQDDIAVVVASGAIMDGSQPPGTVGGDTTAALLRQARNDDKVKA 367

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   I+ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 368 VVLRVDSPGGSAFASEVIRNEIEALKEAGKPVVASMSSLAASGGYWISMSADRIVAQPTT 427

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +  L+ LG+    V +SP  ++    + ++  A Q  Q  ++  Y+
Sbjct: 428 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTSPF-SDVGVTTGLSDGASQAFQMGIEHGYN 486

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F+ LVS+SR+IP +    ++ GR+WTG +A + GLID +G  ++  +    L   +  +
Sbjct: 487 RFIGLVSQSRDIPLENVDDVAQGRVWTGQDALEFGLIDKIGDFDDAVKLAAELAKVEQYN 546

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           I  +++   P   +  D  N    +L  D   L+ Q    
Sbjct: 547 IYWVEEPLSPAQQFIQDFMNQVKVNLGIDATALLPQALQP 586



 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 94/285 (32%), Gaps = 38/285 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVE-DNSPHVARIAIRGQIEDSQ-------- 51
           + F+   +     + S+  +  +Y +  +            + I G I +          
Sbjct: 19  ITFIRLALINLIFLASIGAIYFLYTTADTPTPVAPKESALIVNISGPIVEQSTYANPMDS 78

Query: 52  ------------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQK 92
                             ++++ I     D + + L+++L   P  +      I +A+ +
Sbjct: 79  LTGSLLFGKELPKENVLFDIVDTIRHAKDDQNVSGLVLALRDLPETNLTKLRYIAKALNE 138

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            K     I  V +M   + Y ++  ++ I  A    V   G      Y K  L+KL V+ 
Sbjct: 139 FKASGKPIYAVGDMYNQSQYYLASYADKIYLAPDGAVMLKGYSAYSLYYKTLLEKLDVNT 198

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-------- 202
              +    K+   PF    ++  A +     +   +  ++  V+ +R +           
Sbjct: 199 HVFRVGTYKSAIEPFIRDGMSDPAKESASRWLGQLWGAYIDDVASNRQLEPKLLTPDMDT 258

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
              +L        A +   GL+D +  +++V + L  +       
Sbjct: 259 FLELLKKNNGDLAALSLNEGLVDQLATRQQVRKELIEVFGSNGDD 303


>gi|26988637|ref|NP_744062.1| signal peptide peptidase SppA, 36K type [Pseudomonas putida KT2440]
 gi|24983418|gb|AAN67526.1|AE016381_3 peptidase, putative [Pseudomonas putida KT2440]
          Length = 329

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/276 (24%), Positives = 128/276 (46%), Gaps = 16/276 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIE 58
           +  K+ T   +  ++ L             ++ H A + +RG I D     +  +++ + 
Sbjct: 43  IFFKLLTFVYLFGILALFSPLMDMDKAASRSASHTALVEVRGVIADQEAASADNIVKSLR 102

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT---EVHEMAASAGYLIS 115
              +DD   A+++ ++SPGGS      ++  I++++   P I     + ++ AS  Y I+
Sbjct: 103 EAFKDDKTKAVVMRINSPGGSPVQAGYVYDEIRRLRAEYPAIKLYAVIADLGASGAYYIA 162

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I A + SLVGSIGV          ++KLGV  ++  S   KA   PFS   P+  
Sbjct: 163 SAADEIYADKASLVGSIGVTAAGYGFVGTMEKLGVERRAYTSGEHKAFLDPFSPEKPEET 222

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
           +  Q V+D+++  F+ +V + R           L  G IW+G +AK +GL+D +G    V
Sbjct: 223 RFWQGVLDTTHRQFIAMVKQGRGERLKDKEHPELFSGLIWSGEQAKALGLVDGLGSASYV 282

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
            + +         +++ D+   ++ +    K +  S
Sbjct: 283 AREIVG------EKELVDFTVQESPFDRFSKRVGAS 312


>gi|298372905|ref|ZP_06982895.1| signal peptide peptidase SppA, 67K type [Bacteroidetes oral taxon
           274 str. F0058]
 gi|298275809|gb|EFI17360.1| signal peptide peptidase SppA, 67K type [Bacteroidetes oral taxon
           274 str. F0058]
          Length = 582

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 76/277 (27%), Positives = 142/277 (51%), Gaps = 11/277 (3%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-------- 52
           M+ ++K +  +       +L  +    S H   +   +A +   G+I+ S E        
Sbjct: 269 MDSIIKALTVKD--YHTASLDDIKNVSSKHKSRSKNKIAVLYAVGEIDGSDERSGINSQK 326

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +++ +  ++ DD   A+++ ++SPGGSA+  E I++A+ KVK RKPV+  + + AAS GY
Sbjct: 327 IVDELIDLADDDKIKAVVLRVNSPGGSAFGSEQIWQAVGKVKARKPVVVSMGDYAASGGY 386

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            ISC ++ I A  T+L GSIG+   +P VK   DK+G+S +SVK++      + +  +  
Sbjct: 387 YISCIADRIFAEPTTLTGSIGIFGMFPNVKGLFDKIGLSFESVKTNKFSDFGATYRPMAA 446

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
           +   ++Q  ++  Y  F +  ++ R +  D    +++GRI++G++A ++GL+D +GG  E
Sbjct: 447 EEKVLLQKYIEKGYDLFTKRCADGRGMSQDSIKKIAEGRIYSGSDALQLGLVDELGGLNE 506

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
                           IK++   K       +  S S
Sbjct: 507 AIAFAAKQAKV-DEYSIKNYPAVKTVMEQLTEMFSTS 542



 Score = 93.5 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 119/326 (36%), Gaps = 42/326 (12%)

Query: 1   MEFVLKKIKT----------RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED- 49
           M+  LK +             +V+L    + V   S  +    +   V  + ++G + + 
Sbjct: 1   MKSFLKYVFATIVGLLIFSVLWVLLFFAMIGVAMSSSKNTAPISENTVFELELKGNLVER 60

Query: 50  ---------------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
                                  +++E IE+ + +D    + + + +   S  + + I+R
Sbjct: 61  AEEDIWTSIAAEMNSSQRQIALDDIVESIEKAAGEDKIKGIYLKIGNLSASMASLQQIYR 120

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
            + + K     I    +   +  Y ++  ++ +       +   G+     + K  LDKL
Sbjct: 121 CLGQFKKSGKFIVAYGDYYGNGTYYLASIADKVYLNPEGTLALSGLQASTMFYKNLLDKL 180

Query: 149 GVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           GV ++  K    K+   PF++  ++      +   ++S +      V+++R    D    
Sbjct: 181 GVDMQIFKVGTFKSAVEPFTQTSMSEANKLQLTAYINSLWKEITTSVAQNRATTVDNINA 240

Query: 207 LSDGRIWTGA--EAKKVGLIDVVGGQEEVWQSLYALGVDQ----SIRKIKDWNPPKNYWF 260
            +D  ++ G   E  K  LID +  Q ++   + AL V      S+  IK+ +       
Sbjct: 241 FADSGLFFGEAMETVKYKLIDSLVYQSDMDSIIKALTVKDYHTASLDDIKNVSSKHKS-- 298

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQG 286
                +++   + +     +++ +  
Sbjct: 299 RSKNKIAVLYAVGEIDGSDERSGINS 324


>gi|294494857|ref|YP_003541350.1| signal peptide peptidase A [Methanohalophilus mahii DSM 5219]
 gi|292665856|gb|ADE35705.1| signal peptide peptidase A [Methanohalophilus mahii DSM 5219]
          Length = 372

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 141/294 (47%), Gaps = 12/294 (4%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-----------EDSQELIER 56
           +    +++   +  ++Y++       ++  VA I I+G +             S+++   
Sbjct: 79  LIAVLLLVIGSSFAIIYYAAGGDFYPDNDRVAVIYIQGTMLTGSVPSGLGYATSEDISSS 138

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLIS 115
           I +   DDS  A+++ ++S GGS  A E I   I+K +    PV+T + ++AASA Y +S
Sbjct: 139 IRKAVDDDSVKAIVLRVNSGGGSGSASEEINTEIRKAQQAGVPVVTSMGDVAASAAYHVS 198

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            ++++IVA   ++ GSIGV++ +  +  + ++ G+     KS   K     +  ++ +  
Sbjct: 199 SSTDLIVANRNTMTGSIGVIWTFRNMSAYYEEEGIDFHVAKSGEFKDMGGTWRGLSDEEK 258

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           +    V+  SY+ FV+ V++ RN+   +   ++DGRI+TG  AK++GLID  G   +   
Sbjct: 259 EYADRVIMESYNLFVQDVAQGRNMTVSEVKDIADGRIYTGVSAKRIGLIDEYGNFYDAID 318

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
               +G  +    I   N P          +   +++E+ +   +++    L  
Sbjct: 319 RAAGMGGIEGEPSIYYVNKPSITNLLFGSEVQNDNMVENFVNYYEKSPFGKLAY 372


>gi|148549012|ref|YP_001269114.1| signal peptide peptidase SppA, 36K type [Pseudomonas putida F1]
 gi|148513070|gb|ABQ79930.1| signal peptide peptidase SppA, 36K type [Pseudomonas putida F1]
          Length = 329

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/276 (24%), Positives = 128/276 (46%), Gaps = 16/276 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIE 58
           +  K+ T   +  ++ L             ++ H A + +RG I D     +  +++ + 
Sbjct: 43  IFFKLLTFVYLFGILALFSPLMDMDKAASRSASHTALVEVRGVIADQEAASADNIVKSLR 102

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT---EVHEMAASAGYLIS 115
              +DD   A+++ ++SPGGS      ++  I++++   P I     + ++ AS  Y I+
Sbjct: 103 EAFKDDKTKAVVMRINSPGGSPVQAGYVYDEIRRLRAEYPAIKLYAVIADLGASGAYYIA 162

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I A + SLVGSIGV          ++KLGV  ++  S   KA   PFS   P+  
Sbjct: 163 SAADEIYADKASLVGSIGVTAAGYGFVGAMEKLGVERRAYTSGEHKAFLDPFSPEKPEET 222

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
           +  Q V+D+++  F+ +V + R           L  G IW+G +AK +GL+D +G    V
Sbjct: 223 RFWQGVLDTTHQQFIAMVKQGRGERLKDKEHPELFSGLIWSGEQAKALGLVDGLGSASYV 282

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
            + +         +++ D+   ++ +    K +  S
Sbjct: 283 AREIVG------EKELVDFTVQESPFDRFSKRVGAS 312


>gi|238797349|ref|ZP_04640849.1| Protease 4 [Yersinia mollaretii ATCC 43969]
 gi|238718780|gb|EEQ10596.1| Protease 4 [Yersinia mollaretii ATCC 43969]
          Length = 598

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 68/272 (25%), Positives = 124/272 (45%), Gaps = 14/272 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
           +        +A I   G I D            L  +I +   D    A+I+ ++SPGGS
Sbjct: 299 TPTPQQGEQIAVIFANGAIMDGPQTPGNVGGDTLAAQIRQARLDPKIKAVILRVNSPGGS 358

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +  ++  +KP++  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 359 VSASELIRSELSALRAAKKPLVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 418

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  L+ +GV    V +SP+          +  +   MQ  +++ Y  FV LV+ SR+
Sbjct: 419 NTFQNSLESIGVHTDGVATSPLADISITKDLPSEFSQM-MQINIENGYKTFVDLVATSRH 477

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +W G +AK  GL+D +G  ++  + +  L   ++ +     + P   
Sbjct: 478 KTPEQVDQIAQGHVWIGFDAKNNGLVDQLGDFDDAVKKVAELAQLKTWQLNWFIDEPS-- 535

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
              DL    +S+ ++  +P   Q  +    ++
Sbjct: 536 -LSDLIFGQMSASVQAMLPAAIQAWLPAPISI 566



 Score = 85.8 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 108/315 (34%), Gaps = 44/315 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           M FV + I   +++L ++    VY  + +   +       + + G + D           
Sbjct: 1   MNFVREFILNLFLILLILVGVGVYLQFQTKPVEPVKGALLVNLSGVVVDQPAVNNKLRQW 60

Query: 52  ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92
                             +++E I     D++   +++SLS   G+     + I +A+++
Sbjct: 61  GRELLGASSNRLQENSLFDVVETIRLAKTDNNINGMVLSLSDFTGADQPSLQYIGKALRE 120

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            ++    I  + +      Y ++  +N I  +    V   G      Y K  L+KL V+ 
Sbjct: 121 FRDSGKPIYAIGDSYNQNQYYLASFANKIYLSPQGAVDLHGFASNNLYYKSLLEKLKVTT 180

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203
              +    K+   P    +++P A +     +   +  ++  V+ +R +  ++       
Sbjct: 181 NIFRVGTFKSAVEPMIRDDMSPAAREADSRWIGGLWQNYLTAVAANRQLTPEQLFPGAAG 240

Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPK 256
               L      T   A    L+D +  + ++   L           + +   I D+ P  
Sbjct: 241 VISGLQTAGGSTAKYALDNKLVDQLASRPDMESELIKTFGWDKKSNNFNYISIYDYQPTP 300

Query: 257 NYWFCDLKNLSISSL 271
                +   +  ++ 
Sbjct: 301 TPQQGEQIAVIFANG 315


>gi|325913830|ref|ZP_08176189.1| signal peptide peptidase SppA, 67K type [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325539905|gb|EGD11542.1| signal peptide peptidase SppA, 67K type [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 633

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 120/256 (46%), Gaps = 11/256 (4%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           D+ P VA +   G+I            +     + +   DD   A+++ + SPGG  +A 
Sbjct: 331 DSRPQVAVVVAAGEISGGEQPAGRIGGESTAALLRQARDDDEVKAVVLRVDSPGGEVFAS 390

Query: 84  EAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I R +  + +  KPV+  + ++AAS GY IS  ++ I A  +++ GSIG+    P + 
Sbjct: 391 EQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGSIGIFGMVPNLT 450

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LDK+GV    V ++           ++P A Q++Q V++  Y  F   V+++R+   +
Sbjct: 451 RALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTGKVAQARHQSVE 510

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR-KIKDWNPPKNYWFC 261
               ++ GR+W+GA+AK+ GL+D  GG +E              + +++    P   +  
Sbjct: 511 AIDKVARGRVWSGAQAKQHGLVDAFGGMQEAVADAANRAKLSKGKFRVRYVEKPATPFSQ 570

Query: 262 DLKNLSISSLLEDTIP 277
            +   + S +    + 
Sbjct: 571 FMSGFAGSRMGAWMLS 586



 Score = 69.6 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 101/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRGQIEDS------ 50
           M F  + I        L+ L ++     +  +   P        I   G + +       
Sbjct: 21  MNFTRRLIFNLVFFGFLLLLLLLVVVAMARGDGTKPLAERTTLVINPEGTLVEQFSADPV 80

Query: 51  ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQ 91
                             ++L+  IE   +D     ++++L     S +A +  +  A+Q
Sbjct: 81  SRSLAKAVGDKSAEEVQLRDLVRVIEAAGKDRKIERVLLNLDKLQPSGFASQREVAAALQ 140

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGV 150
           K++     I    E  +   YL++  +N +       V   G+  ++  + +   DKLGV
Sbjct: 141 KLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGV 200

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK----T 204
            +   +    K+   P+     +  A +     ++  +  ++  V  +R +   +     
Sbjct: 201 DVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWQRYLGDVGTARKLTPAQLTAGI 260

Query: 205 LVLSDGRIWTGAE----AKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
             L +G +  G +    A +  L+D +  +E+V   L   GV  S   
Sbjct: 261 DTLPEGVVAAGGDLAKFALQQKLVDGLKTREDVDALLTKRGVADSDAD 308


>gi|325925728|ref|ZP_08187103.1| signal peptide peptidase SppA, 67K type [Xanthomonas perforans
           91-118]
 gi|325543856|gb|EGD15264.1| signal peptide peptidase SppA, 67K type [Xanthomonas perforans
           91-118]
          Length = 642

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 122/268 (45%), Gaps = 13/268 (4%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           D+ P VA +   G+I            +     + +   D+   A+++ + SPGG  +A 
Sbjct: 340 DSRPQVAVVVAAGEISGGEQPAGRIGGESTAALLRQARDDEEVKAVVLRVDSPGGEVFAS 399

Query: 84  EAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I R +  + +  KPV+  + ++AAS GY IS  ++ I A  +++ GSIG+    P + 
Sbjct: 400 EQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGSIGIFGMVPNLT 459

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LDK+GV    V ++           ++P A Q++Q V++  Y  F   V+++R+   +
Sbjct: 460 RALDKIGVHTDGVATTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTGKVAQARHQSVE 519

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261
               ++ GR+W+GA+AK+ GL+D  GG  E            +   +++    P   +  
Sbjct: 520 AIDKVARGRVWSGAQAKERGLVDAFGGMSEAVADAADRAKLSRGKFRVRYVEKPATPFSQ 579

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289
            +   + S +    +        + L A
Sbjct: 580 FMSGFAGSRMGAWMLG--DSGMARALLA 605



 Score = 67.3 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 97/288 (33%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRGQIEDS------ 50
           M F  + I        L  L +V+    +  +   P        I   G + +       
Sbjct: 30  MNFTRRLIFNLVFFGFLFLLLLVFVVALARGDGTKPLAERTTLVINPEGTLVEQFSADPV 89

Query: 51  ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQ 91
                             ++L+  IE   +D     ++++L     S +A +  +  A+Q
Sbjct: 90  SRSLAKAVGDKSAEEVQLRDLVRVIEAAGKDRKIERVLLNLDKLQPSGFASQREVAVALQ 149

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGV 150
           K++     I    E  +   YL++  +N +       V   G+  ++  + +   DKLGV
Sbjct: 150 KLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGV 209

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-- 206
            +   +    K+   P+     +  A +     ++  +  ++  V  +R +   +     
Sbjct: 210 DVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWQRYLADVGTARKLSPAQLAAGI 269

Query: 207 ------LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 ++         A +  L+D +  +EEV   L   GV  S   
Sbjct: 270 DTLPEGVAAAGGDLAKFALQQKLVDGLKTREEVDALLVKRGVADSDAD 317


>gi|183599305|ref|ZP_02960798.1| hypothetical protein PROSTU_02769 [Providencia stuartii ATCC 25827]
 gi|188021539|gb|EDU59579.1| hypothetical protein PROSTU_02769 [Providencia stuartii ATCC 25827]
          Length = 622

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 73/277 (26%), Positives = 136/277 (49%), Gaps = 14/277 (5%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSL 73
           +  +  S     + ++A I ++G I D  +         +  +I     +++  A+I+ +
Sbjct: 320 LTSTTGSETSATAGNIAVIIVQGAIMDGPQSPGIASGDLISSQIREARLNENIKAIILRV 379

Query: 74  SSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           +SPGGS  A + I   +   +   KPV+  +  MAAS GY +S  +N IVA+  ++ GSI
Sbjct: 380 NSPGGSVTASDLIRNELASARAAGKPVVVSMGGMAASGGYWVSTPANYIVASPNTITGSI 439

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           G+       +  LD +GV    V ++P+    +    ++P+   MMQ  +++ Y  F+ L
Sbjct: 440 GIFGVINTFENALDSVGVYTDGVSTTPLADISAT-KGISPEFSDMMQITIENGYKTFIGL 498

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           V++SRN   ++   ++ GR+W G++AKK+GL+D +G  ++       L     +    DW
Sbjct: 499 VAKSRNKTPEEIDKIAQGRVWIGSDAKKIGLVDQLGDFDDAVTKAAELAKLNDVS--LDW 556

Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
             P+  +   L  L +SS  +  +P + Q  +    A
Sbjct: 557 MQPELSFMDQLI-LELSSTAQAVMPDILQVFLPEAVA 592



 Score = 79.7 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 113/332 (34%), Gaps = 43/332 (12%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH--VARIAIRGQIEDSQ------- 51
           + F+ + +     ++    +      + S  + +  +     + ++G + D         
Sbjct: 19  LNFIRELVFNTIFLILCFLVIGSIALYQSDSKPDQNYFGALYVDLQGIVVDQVSTPDPFG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               ++++ I   + DD  T +++ L +   +       I +AI
Sbjct: 79  RMSRELLGTPNNRMQENSLFDIVDTIRSAATDDRITGMVLRLDNLVSADQPSLNFIGKAI 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
            + K     I  V +  + + Y ++  ++ I  +   +VG  G      Y K  L+KL V
Sbjct: 139 TEFKESGKPIYAVGDSFSQSQYYLASYADHIFLSPQGMVGIQGFSTNTLYYKSLLEKLKV 198

Query: 151 SIKSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   P     ++P+A Q  +  +D+ ++ ++  ++++R           
Sbjct: 199 SSHIFRVGTYKSAVEPLMRDNMSPEARQATKQWLDALWNNYLDTLAKNRQTTAKGIFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY-- 258
                 L          A    L+D +  +E+    L          K  ++    +Y  
Sbjct: 259 DVLLSKLRASGGDNAKYALNQKLVDKIYTREQAENVLKNQFGWNKQEKHFNYISIYDYSG 318

Query: 259 -WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                  + + ++     + +++   + G  +
Sbjct: 319 KLTSTTGSETSATAGNIAVIIVQGAIMDGPQS 350


>gi|21233189|ref|NP_639106.1| protease IV [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66770130|ref|YP_244892.1| protease IV [Xanthomonas campestris pv. campestris str. 8004]
 gi|188993338|ref|YP_001905348.1| protease IV [Xanthomonas campestris pv. campestris str. B100]
 gi|21115040|gb|AAM43018.1| protease IV [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66575462|gb|AAY50872.1| protease IV [Xanthomonas campestris pv. campestris str. 8004]
 gi|167735098|emb|CAP53310.1| protease IV [Xanthomonas campestris pv. campestris]
          Length = 633

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 67/267 (25%), Positives = 120/267 (44%), Gaps = 11/267 (4%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           D+ P VA +   G+I            +     + +   D+   A+++ + SPGG  +A 
Sbjct: 331 DSRPQVAVVVAAGEISGGEQPAGRIGGESTAALLRQARDDEEIKAVVLRVDSPGGEVFAS 390

Query: 84  EAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I R +  + +  KPV+  + ++AAS GY IS  ++ I A  +++ GSIG+    P + 
Sbjct: 391 EQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGSIGIFGMVPNLT 450

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LDK+GV    V ++           ++P A Q++Q V++  Y  F   V+++R+   +
Sbjct: 451 RALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTGKVAQARHQSVE 510

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               ++ GR+W+GA+AK  GL+D  GG +E      +       +    +       F  
Sbjct: 511 AIDKVARGRVWSGAQAKDHGLVDAFGGMQEAVADAASRAKLSKGKFRVRYVEKAATPFSQ 570

Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWA 289
             +    S L   + L      + L A
Sbjct: 571 FMSGFAGSRLGAWM-LSDSGMARALLA 596



 Score = 69.3 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 103/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA----RIAIRGQIEDS------ 50
           M F  + I        L  L +++    +  +   P  A     IA  G + +       
Sbjct: 21  MNFTRRLIFNLVFFGFLFLLLLLFVVAIARGDGTKPLAARTTLVIAPEGTLVEQFSADPV 80

Query: 51  ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQ 91
                             ++L+  IE   +D     ++++L     S +A +  + +A+Q
Sbjct: 81  SRSLAKAVGDKSAEEVQLRDLVRVIEAAGKDSKIERVLLNLDKLQPSGFASQREVAKALQ 140

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGV 150
            ++     I    E  +   YL++  +N +       V   G+  ++  + +   DKLGV
Sbjct: 141 GLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGV 200

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK----T 204
            +   +    K+   P+     +  A +     ++  +  ++  V+ +R +   +     
Sbjct: 201 DVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWQRYLADVATARKLSPAQLAAGI 260

Query: 205 LVLSDGRIWTGAE----AKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
             L +G    G +    A +  L+D +  +E+V   L   GV  +   
Sbjct: 261 DTLPEGVTAAGGDLAKFALQQKLVDGLKTREQVDSLLTERGVADNDAD 308


>gi|89100078|ref|ZP_01172947.1| signal peptide peptidase [Bacillus sp. NRRL B-14911]
 gi|89085168|gb|EAR64300.1| signal peptide peptidase [Bacillus sp. NRRL B-14911]
          Length = 358

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 77/271 (28%), Positives = 137/271 (50%), Gaps = 19/271 (7%)

Query: 30  HVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSS 75
               +S  +A + + G I+D+              +  +++++ +  DDS  A+I+ ++S
Sbjct: 76  EPGSSSKKIAVLNVDGTIQDAGDASSLFASPGYNHKSFMKKLDHVKEDDSVKAVILRVNS 135

Query: 76  PGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           PGG       I   I +++   +KPV   +  MAAS GY IS  +  I A+  +L GS+G
Sbjct: 136 PGGGVVESSEIHDKIVEIQKEAKKPVYISMGSMAASGGYYISAPAEKIYASPETLTGSLG 195

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V+ Q        +K GV   ++KS P K   SP  E+  +  +++Q ++D+SY  FV+++
Sbjct: 196 VIMQGYNYAGLAEKYGVEFVTIKSGPYKDIMSPSREMTEEEREILQSMIDNSYEGFVKVI 255

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           SE R IP D+   ++DGRI+ G +AK++ LID  G  E+V   L      +  + +   +
Sbjct: 256 SEGRGIPADQVRKIADGRIYDGRQAKELNLIDGFGFFEDVVDELEKDHKLKGAQVV---S 312

Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
             +N  F  L ++    ++ D I +    K+
Sbjct: 313 YSENMGFGSLFSMGARKVMGDDIEMAGMMKL 343


>gi|229528985|ref|ZP_04418375.1| protease IV [Vibrio cholerae 12129(1)]
 gi|229332759|gb|EEN98245.1| protease IV [Vibrio cholerae 12129(1)]
          Length = 616

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 126/287 (43%), Gaps = 14/287 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           +       +  +    ++  +A +   G I D            +   +     D +  A
Sbjct: 307 IGYYEYKTTIKTTTLTDANDIAIVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   I+ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +  L+ LG+    V ++P  +     + +   A   +Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGLTTGLTQGAKDAIQLGIEHGYQ 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F+ LV+E R +       L+ GR+WT  +A+ +GL+D +G  ++       L      +
Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           +  +++   P   +  DL      SL  D +  +    +Q L   W 
Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSTLLPKSLQPLAVEWQ 591



 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 100/283 (35%), Gaps = 37/283 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51
           + F+   +     +LS+  +  +Y    + +       A  + + G I +          
Sbjct: 19  ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            +++E +     D++ T L+++    P  +      I +AI + 
Sbjct: 79  FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 139 KASGKPVFAVGDFYNQSQYHLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203
             +    K+   PF   +++  A +     +   +  +V  V+ +R I          + 
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEEF 258

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
              L +      A +KKVGL+D +  +++V Q+L         
Sbjct: 259 VAQLKEVNGDLAALSKKVGLVDELATRQQVRQTLAETFGSDGK 301


>gi|284921686|emb|CBG34758.1| protease IV [Escherichia coli 042]
          Length = 618

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARSAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    +  +A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITKALPQEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QRLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|327484530|gb|AEA78937.1| Protease IV [Vibrio cholerae LMA3894-4]
          Length = 616

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 126/287 (43%), Gaps = 14/287 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           +       +  +    ++  +A +   G I D            +   +     D +  A
Sbjct: 307 IGYYEYKTTIKTTTLTDANDIAIVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   I+ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +  L+ LG+    V ++P  +     + +   A   +Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGLTTGLTQGAKDAIQLGIEHGYQ 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F+ LV+E R +       L+ GR+WT  +A+ +GL+D +G  ++       L      +
Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           +  +++   P   +  DL      SL  D +  +    +Q L   W 
Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSTLLPKSLQPLAVEWQ 591



 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 100/283 (35%), Gaps = 37/283 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51
           + F+   +     +LS+  +  +Y    + +       A  + + G I +          
Sbjct: 19  ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            +++E +     D++ T L+++    P  +      I +AI + 
Sbjct: 79  FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203
             +    K+   PF   +++  A +     +   +  +V  V+ +R I          + 
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEEF 258

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
              L +      A +KKVGL+D +  +++V Q+L         
Sbjct: 259 VAQLKEVNGDLAALSKKVGLVDELATRQQVRQTLAETFGSDGK 301


>gi|315282522|ref|ZP_07870914.1| putative signal peptide peptidase SppA [Listeria marthii FSL
           S4-120]
 gi|313613825|gb|EFR87577.1| putative signal peptide peptidase SppA [Listeria marthii FSL
           S4-120]
          Length = 337

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 73/280 (26%), Positives = 134/280 (47%), Gaps = 19/280 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76
            E     +A +++ G I+D+ +               ++++E++  DD    +++ ++SP
Sbjct: 56  EEGGMDTIAVLSVDGTIQDTGDSGSLFGDTGYNHSLFMQQLEQVRNDDLIQGVLLYVNSP 115

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG       I   I ++K  +  P    +  MAAS GY IS  ++ I A++ +L GS+GV
Sbjct: 116 GGGVMESAQIRDKILQIKKERGIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           + Q       + KLGVS  ++KS   K   S    +     ++MQ ++D SY+ FV++V+
Sbjct: 176 IMQSYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           + R++P ++   ++DGRI+ G +AK+ GLID  G QE+  ++L           I+   P
Sbjct: 236 KGRDMPVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALEALKKEPGLSDATVIEYSAP 295

Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291
                   +    IS   + +   I L    K   +  ++
Sbjct: 296 EDFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYLY 335


>gi|149376748|ref|ZP_01894506.1| putative peptidase [Marinobacter algicola DG893]
 gi|149358987|gb|EDM47453.1| putative peptidase [Marinobacter algicola DG893]
          Length = 346

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 122/274 (44%), Gaps = 14/274 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           +  K+ T   + +L+ +     S +        H A + I G I       +  ++  + 
Sbjct: 62  IFFKLLTFGYLFALLLMIQFPLSGALESAAKGKHTALVEIEGTIAADELASADNIVGSLR 121

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLIS 115
                +++  +I+ ++SPGGS      ++  I ++      K V   + ++ AS  Y I+
Sbjct: 122 EAFEAENSVGVILRINSPGGSPVQSGYVYDEIVRLRGEYPEKKVYAVISDIGASGAYYIA 181

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I A + SLVGSIGV+         +DKLGV  +   +   KA   PFS    + V
Sbjct: 182 AAADEIYADKASLVGSIGVVAGGFGFTGIMDKLGVDRRLYTAGENKAFLDPFSPEEEEEV 241

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           +  QDV+++++  F+  V + R         L  G +W+G +A ++GLID +G    V +
Sbjct: 242 KFWQDVLETTHSQFIESVRKGRGDRLADDEQLFSGLVWSGEQALELGLIDGLGSSSHVAR 301

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
            +           + D++  ++ +   +    +S
Sbjct: 302 QVIGQ------EDLVDYSRRESPFQNIVDQFGVS 329


>gi|238788465|ref|ZP_04632258.1| Protease 4 [Yersinia frederiksenii ATCC 33641]
 gi|238723378|gb|EEQ15025.1| Protease 4 [Yersinia frederiksenii ATCC 33641]
          Length = 624

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 69/273 (25%), Positives = 123/273 (45%), Gaps = 18/273 (6%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
           +        +A +   G I D            L  +I +   D    A+I+ ++SPGGS
Sbjct: 325 TPAPQQGEQIAVLFANGAIMDGPQTPGNVGGDALAAQIRQARLDPKIKAVILRVNSPGGS 384

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +  ++   KP++  +  MAAS GY IS  +N I+A  ++L GSIG+    
Sbjct: 385 VSASELIRSELAALRAANKPLVVSMGGMAASGGYWISTPANYIIANPSTLTGSIGIFGVI 444

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  L+ +GV    V +SP+    S   ++ P+  QMMQ  +++ Y  F+ LV+ SR+
Sbjct: 445 NTFQNSLESIGVHTDGVATSPLANV-SMTKDLPPEFSQMMQINIENGYKTFIDLVATSRH 503

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256
              ++   ++ G +W G +AK  GL+D +G  ++    +  L   +   +    D     
Sbjct: 504 KTPEQVDQIAQGHVWIGMDAKNNGLVDQLGDFDDAVNKVAELAKLKTWQLNWFVD----- 558

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                DL    +S+ ++  +P   Q  +    +
Sbjct: 559 EPSLSDLIFGQMSASVQAILPAAIQAWLPAPIS 591



 Score = 82.0 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 108/315 (34%), Gaps = 44/315 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + FV + I   +++L ++    +Y  + S   +       + + G + D           
Sbjct: 27  LNFVREFILNLFLILLILVGVGIYLQFQSKPAEPVKGALLVNLSGVVVDQPAVNNKLRQL 86

Query: 52  ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92
                             +++E I     D++ T L++SLS   G+     + I +A+++
Sbjct: 87  GRELLGSSSNRLQENSLFDIVETIRLAKTDNNITGLVLSLSDFTGADQPSLQYIGKALRE 146

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            ++    I  + +      Y ++  +N I  +    V   G      Y K  L+KL V+ 
Sbjct: 147 FRDTGKPIYAIGDSYNQTQYYLASFANKIYLSPQGAVDLHGFASNNLYYKSLLEKLKVTT 206

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203
              +    K+   P    +++P A +     +   +  ++  VS +R +  ++       
Sbjct: 207 NIFRVGTYKSAVEPMIRDDMSPAAREADSRWIGGLWQNYLTAVSANRQLTPEQLFPGAAG 266

Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPK 256
               L          A    L+D +  + E+   L           D +   I D+ P  
Sbjct: 267 VISGLQAADGSPAQYALTSKLVDQLASRPEMETELVKTFGWDKKNNDFNYVSIYDYQPTP 326

Query: 257 NYWFCDLKNLSISSL 271
                +   +  ++ 
Sbjct: 327 APQQGEQIAVLFANG 341


>gi|325275823|ref|ZP_08141688.1| signal peptide peptidase SppA, 36K type [Pseudomonas sp. TJI-51]
 gi|324099042|gb|EGB97023.1| signal peptide peptidase SppA, 36K type [Pseudomonas sp. TJI-51]
          Length = 329

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 65/276 (23%), Positives = 127/276 (46%), Gaps = 16/276 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIE 58
           +  K+ T   +  ++ L              + H A + +RG I D     +  +++ + 
Sbjct: 43  IFFKLLTFVYLFGILALFSPLMDMDKAASRGASHTALVEVRGVIADQEAASADNIVKSLR 102

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT---EVHEMAASAGYLIS 115
              +D    A+++ ++SPGGS      ++  I++++   P I     + ++ AS  Y I+
Sbjct: 103 EAFKDSKTKAVVMRINSPGGSPVQAGYVYDEIRRLRAEYPAIKLYAVIADLGASGAYYIA 162

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I A + SLVGSIGV          ++KLGV  ++  S   KA   PFS   P+  
Sbjct: 163 SAADEIYADKASLVGSIGVTAAGYGFVGTMEKLGVERRAYTSGEHKAFLDPFSPEKPEET 222

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
           +  Q V+D++++ F+ +V + R           L  G +W+G +AK +GL+D +G    V
Sbjct: 223 RFWQGVLDTTHNQFIAMVKQGRGERLKDKEHPELFSGLVWSGEQAKALGLVDGLGSASYV 282

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
            + +         +++ D+   ++ +    K +  S
Sbjct: 283 AREIVG------EKELVDFTVQESPFDRFSKRVGAS 312


>gi|330502590|ref|YP_004379459.1| signal peptide peptidase SppA, 36K type [Pseudomonas mendocina
           NK-01]
 gi|328916876|gb|AEB57707.1| signal peptide peptidase SppA, 36K type [Pseudomonas mendocina
           NK-01]
          Length = 325

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 128/297 (43%), Gaps = 23/297 (7%)

Query: 6   KKIKTRYVMLSLVTLT-----VVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIE 55
           ++    + +L+ + L      V+           + H A I IRG I D     + +++ 
Sbjct: 36  RRWGIFFKLLTFIYLFGALALVLPALDLKSASTTTAHTALIEIRGMIADREEASADKVVG 95

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGY 112
            +     D +   +I+ ++SPGGS      I+  I+++     +  V   + ++ AS  Y
Sbjct: 96  SLRAAFEDTNTKGVILRINSPGGSPVQSGYIYDEIRRLRGEYPQTKVYAVISDLGASGAY 155

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            I+ A++ I A + SLVGSIGV          ++KLGV  +   S   KA   PF     
Sbjct: 156 YIASAADEIYADKASLVGSIGVTAASFGFVETMEKLGVERRVYTSGEHKAFLDPFQPQKE 215

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPY--DKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
           +  +  + V+D+++  F+  V + R      D+   L  G +W+G +A ++GL+D +G  
Sbjct: 216 EETRFWKTVLDTTHRQFIDSVKKGRGDRLKADEHPELFSGLVWSGEQALQLGLVDALGSA 275

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
             V + +         +++ D+      +    K L  S  + D I L    +   L
Sbjct: 276 SYVAREVIG------EKEMVDFTQRDTPFDRFAKRLGTS--VADRIALWMGFQGPTL 324


>gi|324113514|gb|EGC07489.1| signal peptide peptidase SppA [Escherichia fergusonii B253]
          Length = 618

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 15/283 (5%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATAL 69
            ++   ++  + V+     +  +   G I D +E            +I     D    A+
Sbjct: 310 AISFYDYALKTPVKTPE-MIGVVFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAI 368

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           ++ ++SPGGS  A E I   +   K   KPV+  +  MAAS GY IS  +N I+A  ++L
Sbjct: 369 VLRVNSPGGSVTASEVIRSELAAAKAAGKPVVVSMGGMAASGGYWISTPANYIIANPSTL 428

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIG+      V+  LD +GV    V +SP+       S         MQ  +++ Y  
Sbjct: 429 TGSIGIFGVINTVENSLDSIGVHTDGVSTSPLANMSVTQSLPTEVQQM-MQLSIENGYKR 487

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           F+ LV+++R    ++   ++ G +WTG +AK  GL+D +G  ++       L        
Sbjct: 488 FITLVADARKSTPEQVDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWS 546

Query: 249 IKDWNPPKNYWFC--DLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           I  +     ++    D  + S+ ++L   I  M    +    +
Sbjct: 547 INYYQDEPTFFDMVVDSMSGSVRAMLPQAIQAMLPAPLATAVS 589



 Score = 97.0 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKTR-YVMLSLVTLTVVYFSWSSHVEDNSPHVARI-AIRGQIEDSQ------- 51
           + FV + +    ++ L L+ + +     S+   D++   A +  I G I D         
Sbjct: 19  LNFVREMVLNLLFIFLVLIGVGIWMQVSSNGSSDSASRGALLLDISGVIVDKPSNNHRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G+     + I +A+
Sbjct: 79  VIGRQLFGASSERLQENSLFDIVNTIRQAKDDSNITGIVLDLENFAGADQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  + E      Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVIAIGESYTQGQYYLASFANKIWLSPQGTVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     V   +  ++  ++ +R I   +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWVGELWQNYLNTIAANRQISAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A    L+D +G   +V ++L          K
Sbjct: 259 QAMIADLTKLGGDTAQYALDHKLVDALGSSADVEKALTKQFGWSKADK 306


>gi|146306653|ref|YP_001187118.1| signal peptide peptidase SppA, 36K type [Pseudomonas mendocina ymp]
 gi|145574854|gb|ABP84386.1| signal peptide peptidase SppA, 36K type [Pseudomonas mendocina ymp]
          Length = 326

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 123/297 (41%), Gaps = 23/297 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSS-----HVEDNSPHVARIAIRGQIEDSQE-----LIE 55
           ++    + +L+ + L      +              H A I IRG I D ++     ++ 
Sbjct: 37  RRWGIFFKLLTFLYLFGALALFLPALDLKKGASTGAHTALIEIRGMIADQEQASADKVVG 96

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGY 112
            +     D +   +I+ ++SPGGS      I+  I++++   P I     +    AS  Y
Sbjct: 97  SLRAAFEDANTKGVILRINSPGGSPVQSGYIYDEIRRLRGEHPQIKVYAVITDLGASGAY 156

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            I+ A++ I A + SLVGSIGV          ++KLGV  +   S   KA   PF     
Sbjct: 157 YIASAADEIYADKASLVGSIGVTAASFGFVETMEKLGVERRVYTSGEHKAFLDPFQPQKE 216

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--LVLSDGRIWTGAEAKKVGLIDVVGGQ 230
           +  +  + V+D+++  F+  V + R           L  G +W+G +A ++GL+D +G  
Sbjct: 217 EETRFWKGVLDTTHRQFIESVKQGRGDRLKADAHPELFSGLVWSGEQALQLGLVDALGSA 276

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
             V + +         +++ D+      +    K L  S  + D I L    +   L
Sbjct: 277 SYVAREVIG------EKEMVDFTVRDTPFDRFAKRLGTS--VADRIALWMGFQGPTL 325


>gi|29347289|ref|NP_810792.1| protease IV [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339188|gb|AAO76986.1| protease IV [Bacteroides thetaiotaomicron VPI-5482]
          Length = 592

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 71/284 (25%), Positives = 132/284 (46%), Gaps = 13/284 (4%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRD 63
            L    ++    +   + +   VA     G+I D              ++I  + ++  D
Sbjct: 287 VLGLSDMINVKKNMPKDKSGNIVAVYYASGEITDYSGSSTSEEGIVGTKVIRDLRKLKDD 346

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
           +   A+++ ++SPGGSA+A E I+ A++++K  KPVI  + + AAS GY ISC ++ IVA
Sbjct: 347 EDVKAVVLRVNSPGGSAFASEQIWHAVKELKTEKPVIVSMGDYAASGGYYISCVADTIVA 406

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
             T+L GSIG+    P VK   +K+G++   VK++      +     N     +MQ ++ 
Sbjct: 407 EPTTLTGSIGIFGMVPNVKELSEKIGLTYDVVKTNKFSDFGNIMRPFNQDEKTLMQMMIT 466

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
             Y  FV   +E R++  +    +++GR+WTG  AK++GL+DV+GG +   +        
Sbjct: 467 QGYDTFVNRCAEGRHMSKEAIEKIAEGRVWTGEAAKELGLVDVLGGIDTALEIAVRKAGI 526

Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +    +  +   ++     L     + +    +        Q  
Sbjct: 527 EG-YTVVSYPAKQDLLSSLLNTKPTNYVESQILKSKLGEYYQQF 569



 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 98/264 (37%), Gaps = 26/264 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49
             ++ +VTL  +  +  +        V  + + G +                        
Sbjct: 22  LFIIGMVTLFGIVSTADTETIVKKNSVMMLDLNGVLVERTQESPLGILSQLFSDDSNTYG 81

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
             +++  I++   +++   + +  S  G S  + + I  A+   K     I    +    
Sbjct: 82  LDDILSSIKKAKENENIKGIYLQASMLGTSYASLQEIRNALLDFKESGKFIIAYGDSYTQ 141

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y +S  ++ ++     ++   G+     + K  L K+GV ++  K    K+   PF  
Sbjct: 142 GLYYLSSVADKVLLNPKGMIEWKGIASAPLFYKDLLQKIGVEMQIFKVGTYKSAVEPFIS 201

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225
           +E++P   + +   ++S +      VS SR++P D    L+D     +   E+ + GL D
Sbjct: 202 TEMSPANREQVTAFINSIWGQVTEGVSASRSLPVDSLNALADRMLMFYPAEESVQCGLAD 261

Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249
            +  + +V   L      +   ++
Sbjct: 262 TLIYRNDVRNYLKQWVDLKEDDRL 285


>gi|326564633|gb|EGE14851.1| signal peptide peptidase SppA [Moraxella catarrhalis 46P47B1]
 gi|326565450|gb|EGE15621.1| signal peptide peptidase SppA [Moraxella catarrhalis 12P80B1]
 gi|326575606|gb|EGE25530.1| signal peptide peptidase SppA [Moraxella catarrhalis O35E]
          Length = 342

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 123/247 (49%), Gaps = 13/247 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVE---DNSPHVARIAIRGQIE-----DSQELIE 55
            LK +   +++  ++ L      + S  E    N PH+A I + G I      ++Q + +
Sbjct: 52  FLKLLTFAFLVFFIIVLGFGCSGFGSSFERIGINEPHIAIIDVNGAIMTNGDVNAQNIND 111

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFR---AIQKVKNRKPVITEVHEMAASAGY 112
            +     ++ A A++++++SPGGS    + I++    +++    K +   + ++ AS  Y
Sbjct: 112 SLMEAFENNQAKAVVLNINSPGGSPVQSDEIWQMAMMLRQEYPDKKLYAIIGDLGASGAY 171

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            I+ A++ I    +SLVGSIGV+     ++  + K+GV  +++ +   K   S   E+  
Sbjct: 172 YIASAADEIWVNPSSLVGSIGVIMSGYNLEELMKKVGVKDRTITAGEYKDILSSSREMTE 231

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
              Q +Q +++ ++  F++ V + R       +   L  G IWTG +A ++GL D  GG 
Sbjct: 232 TERQHIQALLNKTHQNFIKAVKQGRGSKLKNPEQNQLFSGLIWTGTDAVELGLADKTGGI 291

Query: 231 EEVWQSL 237
            ++ ++L
Sbjct: 292 SQLKKTL 298


>gi|319953646|ref|YP_004164913.1| signal peptide peptidase sppa, 67k type [Cellulophaga algicola DSM
           14237]
 gi|319422306|gb|ADV49415.1| signal peptide peptidase SppA, 67K type [Cellulophaga algicola DSM
           14237]
          Length = 586

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 127/254 (50%), Gaps = 10/254 (3%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSP 76
           +  + +      +A I  +G+I   +          + + ++    DD+  A+++ ++SP
Sbjct: 291 ANKTKLYKGDDKIAVIYAQGEILYGEGGPDVIGQGIINKSLKEAREDDAVKAIVLRVNSP 350

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GGSA   + I+R I+  K  KPV+  + ++AAS GY I+  ++ I A  T++ GSIGV  
Sbjct: 351 GGSALTSDIIWREIELTKAIKPVVVSMGDVAASGGYYIAVGADKIFAEPTTITGSIGVFG 410

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
             P        +G++ + V ++    + S F  ++     M+Q+ V+S+Y  F+  V++ 
Sbjct: 411 TIPNATELAKNIGINAEQVGTNKNSVDYSLFEPMSDGFRNMVQEGVESTYTTFLERVAQG 470

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R I   +   ++ GR+W+G +AK +GL+D +G  ++  +    L        +K +   K
Sbjct: 471 RKITVAEADSMAQGRVWSGLDAKNLGLVDELGNLDDAIKGAAELAEISEF-GVKIFPKYK 529

Query: 257 NYWFCDLKNLSISS 270
           + +   +++   +S
Sbjct: 530 SGFERFMEDYGGAS 543



 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 103/272 (37%), Gaps = 26/272 (9%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVED-NSPHVARIAIRGQIED------------- 49
           ++  +    V+  +  + V   S     +   S  +  I I+  ++D             
Sbjct: 11  IIGCLIAFGVLFGMFLIFVALLSGEDDEKTIKSDSILEIQIQNPVQDYVGRDESDPFAGL 70

Query: 50  ------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103
                   E+I  I+    D+    + ++ +         +AI R ++  K     +   
Sbjct: 71  FQQAQGLDEIIHAIKVAKNDNKIKGISINNNFILAGLSQTQAIRRELEDFKTSGKFVYAY 130

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
            ++     Y ++  ++ +   E   +   G+  +  + K   +K GV ++ ++    K+ 
Sbjct: 131 ADLYVQKDYYLASVADSLFLNEVGSLDFKGLSSEVLFYKDLQEKAGVKMEVIRHGKYKSA 190

Query: 164 PSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKK 220
             P+  +E++      +++++ S +   V  ++ SRN+  +    ++D         A++
Sbjct: 191 VEPYLANEMSEANRTQIKELLSSLWGSMVDEIAISRNMTPENLNSIADTLGGRMPQLARQ 250

Query: 221 VGLIDVVGGQEEVWQSLY---ALGVDQSIRKI 249
            GL+D V   +E    L     L VD+ +  +
Sbjct: 251 SGLVDGVLFFDEYENKLKNALKLAVDKDLNYV 282


>gi|317123138|ref|YP_004103141.1| signal peptide peptidase A [Thermaerobacter marianensis DSM 12885]
 gi|315593118|gb|ADU52414.1| signal peptide peptidase A [Thermaerobacter marianensis DSM 12885]
          Length = 311

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 71/280 (25%), Positives = 140/280 (50%), Gaps = 16/280 (5%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDD 64
           V   +   + ++     +  +A + I G I               + E++ ++++   D 
Sbjct: 22  VVALLWPGAGTAPGGRGTGQIAVVTIDGPIAGGGSAEGLLGAVVGADEVVAQLQKARDDP 81

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVA 123
           +  A+++ +++PGGSA A + I  A+Q+++   KPV+  + ++ AS GY I+  ++ IVA
Sbjct: 82  AVRAVVIRMNTPGGSAAAAQEIGVAVQRLRDAGKPVVASIADLGASGGYWIAAMADRIVA 141

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
              SL GSIGV+ +  + +    KLG+ ++++KS P K   S    +  +  +++Q +V+
Sbjct: 142 NPASLTGSIGVIMEVTHYEDLYQKLGIDVETIKSGPYKDIGSATRPLTEEERRLLQGLVN 201

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
             Y  FV +V+  R +  ++ L L+DGR++TG +AK+ GL+D +G  E+       L   
Sbjct: 202 DIYQQFVDVVARGRKLSRERVLELADGRVFTGRQAKEAGLVDELGTFEDAADLAAELAGL 261

Query: 244 QSIRKIKDWNPPKNYWFCD-LKNLSISSLLEDTIPLMKQT 282
           +   ++ D++ P +          S    L     L+ Q 
Sbjct: 262 ED-YELVDYSSPGSLLDLLRWFGTSGRLGLAQGAGLVPQL 300


>gi|153809450|ref|ZP_01962118.1| hypothetical protein BACCAC_03765 [Bacteroides caccae ATCC 43185]
 gi|149127910|gb|EDM19132.1| hypothetical protein BACCAC_03765 [Bacteroides caccae ATCC 43185]
          Length = 592

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 67/261 (25%), Positives = 129/261 (49%), Gaps = 13/261 (4%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
             + +   VA     G+I D              ++   + ++  +D   A+++ ++SPG
Sbjct: 301 PKDKSGNIVAVYYASGEITDYAGSSASDEGIVGSKVSRDLRKLKDNDDVKAVVLRVNSPG 360

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           GSA+A E I+ A++++K +KPVI  + + AAS GY ISCA++ IVA  T+L GSIG+   
Sbjct: 361 GSAFASEQIWHAVKELKTKKPVIVSMSDYAASGGYYISCAADTIVAEPTTLTGSIGIFGM 420

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
            P VK   DK+G++   VK++      +     N     ++Q  +   Y+ F+   +E R
Sbjct: 421 VPNVKGLTDKIGLTYDVVKTNKYSDFGNIMRPFNEGEKALLQMTITEGYNTFIGRCAEGR 480

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           ++  +    +++GR+WTG  AK++GL+D +GG ++      A         +  +   ++
Sbjct: 481 HMTKEAIEKIAEGRVWTGEAAKELGLVDELGGIDKALDIAVAKADI-ENYTVISYPAKQD 539

Query: 258 YWFCDLKNLSISSLLEDTIPL 278
           ++    +    + +    +  
Sbjct: 540 FFSSLFETKPTNYVEAQLLKS 560



 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 98/264 (37%), Gaps = 26/264 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQ----------------------IED 49
             ++S+VTL  +  +  +        V  + + G                       I  
Sbjct: 22  LFIVSMVTLFGIMSASDTETIVKKNSVMMLDLNGTLVERTQENPLDILSQLFSDDSNIYG 81

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
             +++  I++   +++   + +  SS G S  + + I  A+   K     I    +    
Sbjct: 82  LDDILSSIKKAKENENIKGIYLQASSLGTSYASLQEIRNALLDFKESGKFIIAYGDSYTQ 141

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y +S  ++ ++     ++   G+     + K  L K+GV ++  K    K+   PF  
Sbjct: 142 GLYYLSSVADKVLLNPKGMIEWRGIAAAPVFYKDLLQKIGVEMQIFKVGTYKSAVEPFIS 201

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225
           +E++P   + +   ++S +      VS SR IP D     +D     +   E+ K GL D
Sbjct: 202 TEMSPANREQVTAYINSIWRQVTEGVSNSRYIPVDSLNAYADRMLMFYPAEESVKCGLAD 261

Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249
            +  + +V   L  L       ++
Sbjct: 262 TLIYRNDVRNYLKELVEIGKDDQL 285


>gi|297569510|ref|YP_003690854.1| signal peptide peptidase SppA, 36K type [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925425|gb|ADH86235.1| signal peptide peptidase SppA, 36K type [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 308

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 125/245 (51%)

Query: 11  RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALI 70
            +  +S +  +++  S  +    +   V  I +RG I  + +LIE++    R D   A++
Sbjct: 27  FWAGVSFLIGSLLSDSPLARTARHPEGVGVIEVRGVISSADQLIEQLTDFRRKDKIKAIV 86

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + + SPGG+  A + +F  +++    KPV+  +  +AAS G   +  +  I+A   +L G
Sbjct: 87  LRIDSPGGAVGASQELFEEVKRTNRVKPVVASMGSVAASGGLYAALGAERIIANPGTLTG 146

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+ ++  ++  L K+G   +++KS  +K   +    + P   +M+ ++V + +  FV
Sbjct: 147 SIGVIIKFANLEELLQKIGYRSETIKSGELKDTGAMDRPLTPGEREMLAEMVHAVHRQFV 206

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
             V+ SR++P  +    +DGRI++GA A ++ L+D +G   +      +LG     +   
Sbjct: 207 DDVAASRDLPVGQVEAFADGRIFSGARALELQLVDALGNLNDAAMLAASLGGLDGEQVPH 266

Query: 251 DWNPP 255
              PP
Sbjct: 267 LIYPP 271


>gi|296113528|ref|YP_003627466.1| signal peptide peptidase SppA [Moraxella catarrhalis RH4]
 gi|295921222|gb|ADG61573.1| signal peptide peptidase SppA [Moraxella catarrhalis RH4]
 gi|326559531|gb|EGE09945.1| signal peptide peptidase SppA [Moraxella catarrhalis 7169]
 gi|326562731|gb|EGE13033.1| signal peptide peptidase SppA [Moraxella catarrhalis 103P14B1]
 gi|326567786|gb|EGE17892.1| signal peptide peptidase SppA [Moraxella catarrhalis BC1]
 gi|326568577|gb|EGE18648.1| signal peptide peptidase SppA [Moraxella catarrhalis BC7]
 gi|326568702|gb|EGE18772.1| signal peptide peptidase SppA [Moraxella catarrhalis BC8]
 gi|326572571|gb|EGE22560.1| signal peptide peptidase SppA [Moraxella catarrhalis CO72]
 gi|326574167|gb|EGE24115.1| signal peptide peptidase SppA [Moraxella catarrhalis 101P30B1]
          Length = 342

 Score =  139 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 123/247 (49%), Gaps = 13/247 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVE---DNSPHVARIAIRGQIE-----DSQELIE 55
            LK +   +++  ++ L      + S  E    N PH+A I + G I      ++Q + +
Sbjct: 52  FLKLLTFAFLVFFIIVLGFGCSGFGSSFERIGINEPHIAIIDVNGAIMTNGDVNAQNIND 111

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFR---AIQKVKNRKPVITEVHEMAASAGY 112
            +     ++ A A++++++SPGGS    + I++    +++    K +   + ++ AS  Y
Sbjct: 112 SLMEAFENNQAKAVVLNINSPGGSPVQSDEIWQMAMMLRQEYPDKKLYAIIGDLGASGAY 171

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            I+ A++ I    +SLVGSIGV+     ++  + K+GV  +++ +   K   S   E+  
Sbjct: 172 YIASAADEIWVNPSSLVGSIGVIMSGYNLEELMKKVGVKDRTITAGEYKDILSSSREMTE 231

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
              Q +Q +++ ++  F++ V + R       +   L  G IWTG +A ++GL D  GG 
Sbjct: 232 TERQHIQALLNKTHQNFIKAVKQGRGSKLKNPEQNQLFSGLIWTGTDAVELGLADKTGGI 291

Query: 231 EEVWQSL 237
            ++ ++L
Sbjct: 292 SQLKKTL 298


>gi|296158253|ref|ZP_06841085.1| peptidase S49 [Burkholderia sp. Ch1-1]
 gi|295891589|gb|EFG71375.1| peptidase S49 [Burkholderia sp. Ch1-1]
          Length = 334

 Score =  139 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 124/289 (42%), Gaps = 16/289 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIER 59
           +I  R+V L ++ L +          V     H A +A+ G+I      +++++   +E 
Sbjct: 50  RIFFRFVFLLILLLAIWAAIDFSGDKVAATGRHTAMVALDGEISADTNANAEDISTALES 109

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISC 116
              D     +I+  +SPGGS      I+  I++++ + P I     V +M AS GY  + 
Sbjct: 110 AFDDAGTAGVILRCNSPGGSPVQAGIIYNEIRRLRAKYPSIPLYVVVGDMCASGGYYAAA 169

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
           A++ I   + S+VGSIGVL         +DKLG+  +   S   K    PFS   PK  +
Sbjct: 170 AADKIYVDKASIVGSIGVLMDSFGFTGLMDKLGIQRRLHTSGENKGFFDPFSPETPKMDE 229

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
             QD++D  +  F+  V E R     +T  +  G  WTG ++ ++GL D  G  + V + 
Sbjct: 230 HAQDMLDQIHAQFIDAVREGRGKRLHETPDMFSGLFWTGQKSVELGLADGFGDADYVARD 289

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           L+          I D+   ++      +    +        +    K+ 
Sbjct: 290 LFK------APDIVDYTVKESITDRVARKFGAAVGSGAVHAMALGGKLN 332


>gi|206577621|ref|YP_002239066.1| protease 4 [Klebsiella pneumoniae 342]
 gi|288935968|ref|YP_003440027.1| signal peptide peptidase SppA, 67K type [Klebsiella variicola
           At-22]
 gi|290512774|ref|ZP_06552139.1| signal peptide peptidase SppA, 67K type [Klebsiella sp. 1_1_55]
 gi|206566679|gb|ACI08455.1| protease 4 [Klebsiella pneumoniae 342]
 gi|288890677|gb|ADC58995.1| signal peptide peptidase SppA, 67K type [Klebsiella variicola
           At-22]
 gi|289774657|gb|EFD82660.1| signal peptide peptidase SppA, 67K type [Klebsiella sp. 1_1_55]
          Length = 617

 Score =  139 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 118/266 (44%), Gaps = 22/266 (8%)

Query: 38  VARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           +A I   G I D +E            +I     D    A+++ ++SPGGS  A E I  
Sbjct: 327 IAVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKIKAIVLRVNSPGGSVTASEIIRE 386

Query: 89  AIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            +   K   KPV+  +  MAAS GY IS  ++ IVA  ++L GSIG+      V+  L  
Sbjct: 387 ELAAAKAAGKPVVVSMGGMAASGGYWISTPADYIVANPSTLTGSIGIFGVINTVENTLGS 446

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
           +GV    V +SP+    S    + P+  Q+MQ  +++ Y  F+ LV+ +R    +K   +
Sbjct: 447 IGVHTDGVATSPLADV-SSTKALPPEVQQLMQLSIENGYQRFITLVANARKSTPEKIDQI 505

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G +WTG +AK  GL+D +G  ++       L        +  +     ++        
Sbjct: 506 AQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KTWHLNYYQEEPTFF-------- 556

Query: 268 ISSLLEDTIPLMKQTKVQGLWAVWNP 293
             S++ D++    +  +      W P
Sbjct: 557 --SMVLDSLTGSVRASLPAAIQAWLP 580



 Score = 99.3 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 99/281 (35%), Gaps = 39/281 (13%)

Query: 1   MEFVLKK-IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + F+ K  +   +++L LV + +     ++  E  +     + I G + D          
Sbjct: 19  LNFIRKLALNAIFLVLVLVCIGIWSQFSTTTSEHAARGALLLDITGVVVDKPSASSKLGV 78

Query: 52  -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91
                              ++++ I +   D + T +++ L +  G      + I +A++
Sbjct: 79  IGRQLFGASSDRLQENSLFDIVQTIRQAKDDRNITGIVLDLKNFVGGDQPSMQYIGKALR 138

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           + ++    +  V    +   Y ++  +N I  +    V   G      Y K  LDKL VS
Sbjct: 139 EFRDSGKPVYAVGSSYSQGQYYLASFANKIWLSPQGEVDLHGFATNGLYYKSLLDKLKVS 198

Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------ 203
               +    K+   PF   +++P A +     +   +  ++  ++ +R I   +      
Sbjct: 199 THVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTIAANRQITAQQLFPGAQ 258

Query: 204 --TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
                L      T   A    L+D +    EV ++L     
Sbjct: 259 GIIDGLRKVGGDTAKYALDNKLVDELATSTEVEKALTKQFG 299


>gi|116327402|ref|YP_797122.1| periplasmic serine protease [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331960|ref|YP_801678.1| periplasmic serine protease [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120146|gb|ABJ78189.1| Periplasmic serine protease [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125649|gb|ABJ76920.1| Periplasmic serine protease [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 317

 Score =  139 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 64/283 (22%), Positives = 136/283 (48%), Gaps = 23/283 (8%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVEDNSPHV------------ARIAIRGQI--------- 47
            T  +    V + +V  S S+     S               A I + G+I         
Sbjct: 10  ITFILTTLSVLIGLVNISLSTTTSKYSRVTGGTFFRTAPIGAALIKVEGEIHSGHSTFES 69

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             S+ +++++  I ++ +   +++ ++SPGG+  A + ++  + +++  + ++  + +MA
Sbjct: 70  TGSESILQKLRDIEQNPNIKGILIEINSPGGTVGASQEVYNELMRLRKTRKIVVSMKDMA 129

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           AS GY I+ +++ I A   ++ GSIGV+   P +K  LD+ GV +++ K    K   S F
Sbjct: 130 ASGGYYIASSADKIFALSGTITGSIGVIAMAPNIKGLLDRYGVKMRTYKEGKYKDSLSLF 189

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
            +  P+  +M+Q ++  +Y+ FV+ V++ RN        L++GRI++G +A +  L+D +
Sbjct: 190 RDSTPEEDEMIQKMLSDTYNEFVQDVAKGRNQTVKSVQNLAEGRIYSGQDAFRNKLVDEI 249

Query: 228 GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270
           GG++E  + L  L        +  +   ++ +      L    
Sbjct: 250 GGRKEALEELSRLCQYDGEIPL--YEEEESPFDRLFMMLGSKM 290


>gi|330007634|ref|ZP_08305981.1| signal peptide peptidase SppA [Klebsiella sp. MS 92-3]
 gi|328535428|gb|EGF61902.1| signal peptide peptidase SppA [Klebsiella sp. MS 92-3]
          Length = 617

 Score =  139 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 118/266 (44%), Gaps = 22/266 (8%)

Query: 38  VARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           +A I   G I D +E            +I     D    A+++ ++SPGGS  A E I  
Sbjct: 327 IAVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKIKAIVLRVNSPGGSVTASEIIRE 386

Query: 89  AIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            +   K   KPV+  +  MAAS GY IS  ++ IVA  ++L GSIG+      V+  L  
Sbjct: 387 ELAAAKTAGKPVVVSMGGMAASGGYWISTPADYIVANPSTLTGSIGIFGVINTVENTLGS 446

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
           +GV    V +SP+    S    + P+  Q+MQ  +++ Y  F+ LV+ +R    +K   +
Sbjct: 447 IGVHTDGVATSPLADV-SSTKALPPEVQQLMQLSIENGYQRFITLVANARKSTPEKIDQI 505

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G +WTG +AK  GL+D +G  ++       L        +  +     ++        
Sbjct: 506 AQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KTWHLNYYQEEPTFF-------- 556

Query: 268 ISSLLEDTIPLMKQTKVQGLWAVWNP 293
             S++ D++    +  +      W P
Sbjct: 557 --SMVLDSLTGSVRASLPAAIQAWLP 580



 Score = 99.7 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 99/281 (35%), Gaps = 39/281 (13%)

Query: 1   MEFVLKK-IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + F+ K  +   +++L LV + +     S+  E  +     + I G + D          
Sbjct: 19  LNFIRKLALNAIFLVLVLVCIGIWSQFSSTTSEHAARGALLLDITGVVVDKPSASSKLGV 78

Query: 52  -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91
                              ++++ I +   D + T +++ L +  G      + I +A++
Sbjct: 79  IGRQLFGASSDRLQENSLFDIVQTIRQAKDDRNITGIVLDLKNFVGGDQPSMQYIGKALR 138

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           + ++    +  V    +   Y ++  +N I  +    V   G      Y K  LDKL VS
Sbjct: 139 EFRDSGKPVYAVGSSYSQGQYYLASFANKIWLSPQGEVDLHGFATNGLYYKSLLDKLKVS 198

Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------ 203
               +    K+   PF   +++P A +     +   +  ++  ++ +R I   +      
Sbjct: 199 THVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTIAANRQITAQQLFPGAQ 258

Query: 204 --TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
                L      T   A    L+D +    EV ++L     
Sbjct: 259 GIIDGLRKVGGDTAKYALDNKLVDELATSTEVEKALTKQFG 299


>gi|319788342|ref|YP_004147817.1| signal peptide peptidase SppA, 67K type [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317466854|gb|ADV28586.1| signal peptide peptidase SppA, 67K type [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 635

 Score =  139 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 114/254 (44%), Gaps = 10/254 (3%)

Query: 33  DNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           D  P VA +   G+I            +     + +   D+   A+++ + SPGG  +A 
Sbjct: 335 DKRPQVAVVVAEGEITGGDQPAGTIGGESTSALLRQAREDEDIKAVVLRVDSPGGEVFAS 394

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I R +  +K   KPV+  + ++AAS GY IS  ++ I A  +++ GSIG+    P   
Sbjct: 395 EQIRREVALLKAAGKPVVVSMGDLAASGGYWISMNADRIYADPSTITGSIGIFGLVPNFT 454

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LDK+GV    V ++           ++P+  +++Q V++  Y  F+  V+++R    +
Sbjct: 455 RTLDKIGVHTDGVGTTRYAGAFDVTRPLDPEVGRVIQSVINKGYADFIGKVADARERSVE 514

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               ++ GR+W+GA+A   GL+D +GG  +      +    +  +    +       F  
Sbjct: 515 DIDQVARGRVWSGAQALDRGLVDAMGGLADAIADAASRVDLEEGKYRVRYVEKDPSPFAQ 574

Query: 263 LKNLSISSLLEDTI 276
                  S +  T+
Sbjct: 575 FLAGMAGSRVAATL 588



 Score = 77.3 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 82/211 (38%), Gaps = 12/211 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAAS 109
           ++L+  IE    D +   +++ L     S YA    +  A+  ++     +    E    
Sbjct: 102 RDLLRAIEAAREDKNIERVLLRLDGLQPSGYASLRELAAALGTLRASGKQVVAFSENLGQ 161

Query: 110 AGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167
           + YL++  ++ +       +   G+  ++  + +   +KLGV +   +    K+   P+ 
Sbjct: 162 SQYLLAAQADEVYLDPMGSLLLQGIGRYRQYFRQGLQEKLGVDVHLFRVGEYKSAAEPYI 221

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV--------LSDGRIWTGAEA 218
               + ++ +     ++  ++ ++  V+++R +   +           +          A
Sbjct: 222 LDAASAESKEADLYWMNDIWNRYLDDVAKARKLDKAELAAQIDQLAAGIEAAGGDIARHA 281

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           +++ L+D +  +EEV   L   GV      +
Sbjct: 282 EQLKLVDGLKTREEVRDLLVERGVADEDDDL 312


>gi|297579498|ref|ZP_06941426.1| protease IV [Vibrio cholerae RC385]
 gi|297537092|gb|EFH75925.1| protease IV [Vibrio cholerae RC385]
          Length = 616

 Score =  139 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 14/287 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           +       +       ++  +A +   G I D            +   +     D +  A
Sbjct: 307 IGYYEYKTTIKPTTLTDANDIAIVIASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   I+ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +  L+ LG+    V ++P  +     + +   A   +Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGLTTGLTQGAKDAIQLGIEHGYQ 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F+ LV+E R +       L+ GR+WT  +A+ +GL+D +G  ++       L      +
Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           +  +++   P   +  DL      SL  D +  +    +Q L   W 
Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSTLLPKSLQPLAVEWQ 591



 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 115/328 (35%), Gaps = 40/328 (12%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51
           + F+   +     +LS+  +  +Y    + +       A  + + G I +          
Sbjct: 19  ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMES 78

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            +++E +     D++ T L+++    P  +      I +AI + 
Sbjct: 79  FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203
             +    K+   PF   +++  A +     +   +  +V  V+ +R I          + 
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEEF 258

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK---IKDWNPPKNYWF 260
              L +      A +KKVGL+D +  +++V Q+L              I  +        
Sbjct: 259 VAQLKEVNGDLAALSKKVGLVDELATRQQVRQTLAETFGSDGKDSYNAIGYYEYKTTIKP 318

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288
             L + +  +++  +  +M  ++ +G  
Sbjct: 319 TTLTDANDIAIVIASGAIMDGSQPRGTV 346


>gi|147679177|ref|YP_001213392.1| periplasmic serine proteases [Pelotomaculum thermopropionicum SI]
 gi|146275274|dbj|BAF61023.1| Periplasmic serine proteases [Pelotomaculum thermopropionicum SI]
          Length = 310

 Score =  139 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 69/261 (26%), Positives = 123/261 (47%), Gaps = 15/261 (5%)

Query: 40  RIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
            I I G I               S+++   +   +R+    A+++ L+SPGG+A A + I
Sbjct: 43  IIYIDGPITGGRGGGGLFETYTSSEQVTSALRNAARNPDLKAVVIRLNSPGGTAAAAQEI 102

Query: 87  FRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
              ++++K   K V+  + + AAS  Y I+  ++ IVA   +L GSIGV+ QY  ++   
Sbjct: 103 SAEVERLKRSGKKVVASMGDSAASGAYWIAACADQIVANPGTLTGSIGVIIQYLNLEELY 162

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV  ++ KS P K   SP      +   + Q ++D  Y+ FV +V+  R+    +  
Sbjct: 163 SKIGVDTETFKSGPHKDMGSPSRPATAEERAIFQSMIDDIYNQFVDVVARGRHKDPAEIR 222

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L+DGRI+TG +AK++GL+D +G   +       L   +    + +  P KN W      
Sbjct: 223 PLADGRIFTGRQAKELGLVDRLGDLHDAVLLAGELAGIKGEPAVVEIGP-KNIWQELFAG 281

Query: 266 LSISSLLEDTIPLMKQTKVQG 286
              ++  +     +   +  G
Sbjct: 282 AGGNTFRKPGWLAIPGREGDG 302


>gi|153951329|ref|YP_001397333.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|152938775|gb|ABS43516.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 298

 Score =  139 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 66/275 (24%), Positives = 128/275 (46%), Gaps = 2/275 (0%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64
           +K I T +    L+ + +     S++      ++ RI ++G+I DS  ++E+I     D 
Sbjct: 15  IKFINTYFKTFVLLLIVIWILVPSANSSSKLANLERIDLKGEIFDSSAVLEKIINAKNDS 74

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
           +   ++  + SPGG+      +  AI+ +K +K V+       AS  YL    +N I+A 
Sbjct: 75  NIKGVLFVIDSPGGAFAPSMELALAIKDLKIKKSVLVYASGTMASGSYLAGVGANKILAN 134

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             S +GSIGV+ Q   +    +KLG+  +++++   K+  +     N      +Q ++D 
Sbjct: 135 PASFIGSIGVIMQGADLSGLANKLGIKEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQ 194

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           SY  F   V++ R +  +K    ++ R++  A+AK++GLID +   E   + L  L    
Sbjct: 195 SYDLFTGFVAKERVLDLNKKDQWANARVFLAAKAKELGLIDELSNYENAKKELEKLANVS 254

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
           +   I       + +   LK  + S + +  I + 
Sbjct: 255 N--PIWKEEDKIDKFLNRLKGQASSLISKSLIEIA 287


>gi|148656516|ref|YP_001276721.1| signal peptide peptidase SppA, 36K type [Roseiflexus sp. RS-1]
 gi|148568626|gb|ABQ90771.1| signal peptide peptidase SppA, 36K type [Roseiflexus sp. RS-1]
          Length = 342

 Score =  139 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 122/272 (44%), Gaps = 22/272 (8%)

Query: 34  NSPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVSLSSPGGSAYA 82
            +  +  I + G I              ++L+ +I   + D    A+++ + SPGGS  A
Sbjct: 70  GTDRIVVITVSGAIGADVDGLFSTGLSHEQLLSQIRTAANDSRVKAVVLRVDSPGGSVVA 129

Query: 83  GEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
              ++  ++K+++R K ++  +  +AAS GY IS A   I A   +L GS+GV+      
Sbjct: 130 SNELYVELKKLRDRGKHLVISMGTVAASGGYYISMAGERIYANPDTLTGSLGVIVSLLNY 189

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
               ++LG+     KS  +K   SP      +   +   +V+ +Y  FV ++ E R +  
Sbjct: 190 DEAFERLGLREYVYKSGDLKDIGSPLRPPTSEEEAVWNALVNEAYQGFVDVIVEGRGMER 249

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
            + + L+DGRI+TG +AK +GLID +G  E+  +    L        ++           
Sbjct: 250 TEVIRLADGRIYTGRQAKALGLIDELGNLEDAIEGAKNLAGLSDALVVRY---RAFNTLR 306

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
           DL   ++   L+   PL       GL AV  P
Sbjct: 307 DLLQANLERNLQPVDPL-------GLRAVVQP 331


>gi|238894259|ref|YP_002918993.1| protease 4 [Klebsiella pneumoniae NTUH-K2044]
 gi|238546575|dbj|BAH62926.1| protease IV, a signal peptide peptidase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 617

 Score =  139 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 118/266 (44%), Gaps = 22/266 (8%)

Query: 38  VARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           +A I   G I D +E            +I     D    A+++ ++SPGGS  A E I  
Sbjct: 327 IAVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKIKAIVLRVNSPGGSVTASEIIRE 386

Query: 89  AIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            +   K   KPV+  +  MAAS GY IS  ++ IVA  ++L GSIG+      V+  L  
Sbjct: 387 ELAAAKAAGKPVVVSMGGMAASGGYWISTPADYIVANPSTLTGSIGIFGVINTVENTLGS 446

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
           +GV    V +SP+    S    + P+  Q+MQ  +++ Y  F+ LV+ +R    +K   +
Sbjct: 447 IGVHTDGVATSPLADV-SSTKALPPEVQQLMQLSIENGYQRFITLVANARKSTPEKIDQI 505

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G +WTG +AK  GL+D +G  ++       L        +  +     ++        
Sbjct: 506 AQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KTWHLNYYQEEPTFF-------- 556

Query: 268 ISSLLEDTIPLMKQTKVQGLWAVWNP 293
             S++ D++    +  +      W P
Sbjct: 557 --SMVLDSLTGSVRASLPAAIQAWLP 580



 Score = 98.9 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 98/281 (34%), Gaps = 39/281 (13%)

Query: 1   MEFVLKK-IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + F+ K  +   +++L LV + +     S+  E        + I G + D          
Sbjct: 19  LNFIRKLALNAIFLVLVLVCIGIWSQFSSTTSEHAVRGALLLDITGVVVDKPSASSKLGV 78

Query: 52  -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91
                              ++++ I +   D + T +++ L +  G      + I +A++
Sbjct: 79  IGRQLFGASSDRLQENSLFDIVQTIRQAKDDRNITGIVLDLKNFVGGDQPSMQYIGKALR 138

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           + ++    +  V    +   Y ++  +N I  +    V   G      Y K  LDKL VS
Sbjct: 139 EFRDSGKPVYAVGSSYSQGQYYLASFANKIWLSPQGEVDLHGFATNGLYYKSLLDKLKVS 198

Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------ 203
               +    K+   PF   +++P A +     +   +  ++  ++ +R I   +      
Sbjct: 199 THVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTIAANRQITAQQLFPGAQ 258

Query: 204 --TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
                L      T   A    L+D +    EV ++L     
Sbjct: 259 GIIDGLRKVGGDTAKYALDNKLVDELATSTEVEKALTKQFG 299


>gi|256545925|ref|ZP_05473280.1| U7 family peptidase [Anaerococcus vaginalis ATCC 51170]
 gi|256398347|gb|EEU11969.1| U7 family peptidase [Anaerococcus vaginalis ATCC 51170]
          Length = 333

 Score =  139 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 127/229 (55%), Gaps = 6/229 (2%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQ---ELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
              D    +A I+  G I D +     +E++E I++DDS   +I+ ++SPGG+ Y  E I
Sbjct: 61  EDGDKKNKIALISYEGAIGDGEVYDSFMEQLEDINKDDSVKGVIMQVNSPGGAVYNSEQI 120

Query: 87  FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
              I++++  K  PV T +  MAAS GY IS  ++ I A+  +L GSIGV+      +  
Sbjct: 121 ANKIKEIQTDKKIPVFTVMKTMAASGGYYISAPTDKIYASNETLTGSIGVIMSSRSFQGL 180

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
            +K G+  +++ +  MK   S   ++  +  +  QD+++SS+  F+++VS+ R++  D+ 
Sbjct: 181 FEKYGIKEQNITTGKMKDAGSLGKDMTDEQKKYFQDLINSSFDRFIKVVSQGRSMKEDEV 240

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
             L+DGR++ GA+AK  GL+D +G  ++  + +       +  ++ ++ 
Sbjct: 241 RKLADGRVYDGAQAKNNGLVDKIGNLDDAIEDMKKDYKL-NNPEVFEYE 288


>gi|229524006|ref|ZP_04413411.1| protease IV [Vibrio cholerae bv. albensis VL426]
 gi|229337587|gb|EEO02604.1| protease IV [Vibrio cholerae bv. albensis VL426]
          Length = 616

 Score =  139 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 14/287 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           +       +       ++  +A +   G I D            +   +     D +  A
Sbjct: 307 IGYYEYKTTIKPTTPTDANDIAIVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   I+ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +  L+ LG+    V ++P  +     + +   A   +Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGLTTGLTQGAKDAIQLGIEHGYQ 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F+ LV+E R +       L+ GR+WT  +A+ +GL+D +G  ++       L      +
Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           +  +++   P   +  DL      SL  D +  +    +Q L   W 
Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSTLLPKSLQPLAVEWQ 591



 Score = 89.7 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 99/284 (34%), Gaps = 37/284 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51
           + F+   +     +LS+  +  +Y    + +       A  + + G I +          
Sbjct: 19  ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            +++E +     D++ T L+++    P  +      I +AI + 
Sbjct: 79  FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203
             +    K+   PF   +++  A +     +   +  +V  V+ +R I          + 
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEEF 258

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
                +      A +KKVGL+D +  +++V Q+L          
Sbjct: 259 VAQWKEVNGDLAALSKKVGLVDELATRQQVRQTLAETFGSDGKD 302


>gi|78049494|ref|YP_365669.1| protease IV [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78037924|emb|CAJ25669.1| protease IV [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 633

 Score =  139 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 122/268 (45%), Gaps = 13/268 (4%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           D+ P VA +   G+I            +     + +   D+   A+++ + SPGG  +A 
Sbjct: 331 DSRPQVAVVVAAGEISGGEQPAGRIGGESTAALLRQARDDEEVKAVVLRVDSPGGEVFAS 390

Query: 84  EAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I R +  + +  KPV+  + ++AAS GY IS  ++ I A  +++ GSIG+    P + 
Sbjct: 391 EQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGSIGIFGMVPNLT 450

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LDK+GV    V ++           ++P A Q++Q V++  Y  F   V+++R+   +
Sbjct: 451 RALDKIGVHTDGVATTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTGKVAQARHQSVE 510

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261
               ++ GR+W+GA+AK+ GL+D  GG  E            +   +++    P   +  
Sbjct: 511 AIDKVARGRVWSGAQAKERGLVDAFGGMSEAVADAADRAKLSRGKFRVRYVEKPATPFSQ 570

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289
            +   + S +    +        + L A
Sbjct: 571 FMSGFAGSRMGAWMLS--DSGMARALLA 596



 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 98/288 (34%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRGQIEDS------ 50
           M F  + I        L  L +V+    +  +   P        I   G + +       
Sbjct: 21  MNFTRRLIFNLVFFGFLFLLLLVFVVALARGDGTKPLAERTTLVINPEGTLVEQFSADPV 80

Query: 51  ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQ 91
                             ++L+  IE   +D     ++++L     S +A +  +  A+Q
Sbjct: 81  SRSLAKAVGDKSAEEVQLRDLVRVIEAAGKDRKIERVLLNLDKLQPSGFASQREVAVALQ 140

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGV 150
           K++     I    E  +   YL++  +N +       V   G+  ++  + +   DKLGV
Sbjct: 141 KLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGV 200

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-- 206
            +   +    K+   P+     +  A +     ++  +H ++  V  +R +   +     
Sbjct: 201 DVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWHRYLADVGTARKLSPAQLAAGI 260

Query: 207 ------LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 ++         A +  L+D +  +EEV   L   GV  S   
Sbjct: 261 DTLPEGVAAAGGDLAKFALQQKLVDGLKTREEVDALLVKRGVADSDAD 308


>gi|262043079|ref|ZP_06016219.1| signal peptide peptidase SppA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039567|gb|EEW40698.1| signal peptide peptidase SppA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 617

 Score =  139 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 72/262 (27%), Positives = 120/262 (45%), Gaps = 14/262 (5%)

Query: 38  VARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           +A I   G I D +E            +I     D    A+++ ++SPGGS  A E I  
Sbjct: 327 IAVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKIKAIVLRVNSPGGSVTASEIIRE 386

Query: 89  AIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            +   K   KPV+  +  MAAS GY IS  ++ IVA  ++L GSIG+      V+  L  
Sbjct: 387 ELAAAKAAGKPVVVSMGGMAASGGYWISTPADYIVANPSTLTGSIGIFGVINTVENTLGS 446

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
           +GV    V +SP+    S    + P+  Q+MQ  +++ Y  F+ LV+ +R    +K   +
Sbjct: 447 IGVHTDGVATSPLADV-SSTKALPPEVQQLMQLSIENGYQRFITLVANARKSTPEKIDQI 505

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G +WTG +AK  GL+D +G  ++       L        +  +     ++   L +L+
Sbjct: 506 AQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KTWHLNYYQEEPTFFSMVLDSLT 564

Query: 268 ISSLLEDTIPLMKQTKVQGLWA 289
            S  +  ++P   Q  +    A
Sbjct: 565 GS--VRASLPAAIQAWLPAPVA 584



 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 99/281 (35%), Gaps = 39/281 (13%)

Query: 1   MEFVLKK-IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + F+ K  +   +++L LV + +     S+  E  +     + I G + D          
Sbjct: 19  LNFIRKLALNAIFLVLVLVCIGIWSQFSSTTSEHAARGALLLDITGVVVDKPSASSKLGV 78

Query: 52  -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91
                              ++++ I +   D + T +++ L +  G      + I +A++
Sbjct: 79  IGRQLFGASSDRLQENSLFDIVQTIRQAKDDRNITGIVLDLKNFVGGDQPSMQYIGKALR 138

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           + ++    +  V    +   Y ++  +N I  +    V   G      Y K  LDKL VS
Sbjct: 139 EFRDSGKPVYAVGSSYSQGQYYLASFANKIWLSPQGEVDLHGFATNGLYYKSLLDKLKVS 198

Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------ 203
               +    K+   PF   +++P A +     +   +  ++  ++ +R I   +      
Sbjct: 199 THVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTIAANRQITAQQLFPGAQ 258

Query: 204 --TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
                L      T   A    L+D +    EV ++L     
Sbjct: 259 GIIDGLRKVGGDTAKYALDNKLVDELATSTEVEKALTKQFG 299


>gi|254413026|ref|ZP_05026798.1| signal peptide peptidase SppA, 36K type [Microcoleus chthonoplastes
           PCC 7420]
 gi|196180190|gb|EDX75182.1| signal peptide peptidase SppA, 36K type [Microcoleus chthonoplastes
           PCC 7420]
          Length = 274

 Score =  139 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 73/276 (26%), Positives = 135/276 (48%), Gaps = 10/276 (3%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                   +   +ARI I G I  +  Q +++ ++ +       AL++ + SPGG+    
Sbjct: 1   MPWPFKPKSRKQIARIEITGLIAGNTRQRVLDALKTVEE-KKFPALLLRIDSPGGTVGDS 59

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           + I+ A+ +++ +  +I     ++AS G  +   +  IV    ++ GSIGV+ +   ++ 
Sbjct: 60  QEIYSALMRLREKVKIIASFGNISASGGVYVGMGAEQIVTNPGTITGSIGVILRGNNLER 119

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            LDK+GVS K VKS P K       E+      ++Q+++D+SY  FV+ V+E+RN+  + 
Sbjct: 120 LLDKIGVSFKVVKSGPYKDILGFDRELTDPEKTILQEMIDTSYQQFVQTVAEARNLAVET 179

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCD 262
               +DGRI+TG +A  +G++D +G +E+  +    L   D    K +    PK      
Sbjct: 180 VRSFADGRIFTGQQALDLGVVDRLGTEEDARRWAAELVGLDPEKTKCETIEEPKRLLSRL 239

Query: 263 LKN--LSISSLLEDTIPLMK---QTKVQGLWAVWNP 293
           +      ++S L   I  ++    T  Q LW ++ P
Sbjct: 240 IPGNTGRMNSGLSAGINWLEFELSTSGQPLW-LYRP 274


>gi|152969758|ref|YP_001334867.1| protease 4 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150954607|gb|ABR76637.1| protease IV, a signal peptide peptidase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 617

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 118/266 (44%), Gaps = 22/266 (8%)

Query: 38  VARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           +A I   G I D +E            +I     D    A+++ ++SPGGS  A E I  
Sbjct: 327 IAVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKIKAIVLRVNSPGGSVTASEIIRE 386

Query: 89  AIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            +   K   KPV+  +  MAAS GY IS  ++ IVA  ++L GSIG+      V+  L  
Sbjct: 387 ELAAAKAAGKPVVVSMGGMAASGGYWISTPADYIVANPSTLTGSIGIFGVINTVENTLGS 446

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
           +GV    V +SP+    S    + P+  Q+MQ  +++ Y  F+ LV+ +R    +K   +
Sbjct: 447 IGVHTDGVATSPLADV-SSTKALPPEVQQLMQLSIENGYQRFITLVANARKSTPEKIDQI 505

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G +WTG +AK  GL+D +G  ++       L        +  +     ++        
Sbjct: 506 AQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KTWHLNYYQEEPTFF-------- 556

Query: 268 ISSLLEDTIPLMKQTKVQGLWAVWNP 293
             S++ D++    +  +      W P
Sbjct: 557 --SMVLDSLTGSVRASLPAAIQAWLP 580



 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 99/281 (35%), Gaps = 39/281 (13%)

Query: 1   MEFVLKK-IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + F+ K  +   +++L LV + +     S+  E  +     + I G + D          
Sbjct: 19  LNFIRKLALNAIFLVLVLVCIGIWSQFSSTTSEHAARGALLLDITGVVVDKPSASSKLGV 78

Query: 52  -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91
                              ++++ I +   D + T +++ L +  G      + I +A++
Sbjct: 79  IGRQLFGASSDRLQENSLFDIVQTIRQAKDDRNITGIVLDLKNFVGGDQPSMQYIGKALR 138

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           + ++    +  V    +   Y ++  +N I  +    V   G      Y K  LDKL VS
Sbjct: 139 EFRDSGKPVYAVGSSYSQGQYYLASFANKIWLSPQGEVDLHGFATNGLYYKSLLDKLKVS 198

Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------ 203
               +    K+   PF   +++P A +     +   +  ++  ++ +R I   +      
Sbjct: 199 THVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTIAANRQITAQQLFPGAL 258

Query: 204 --TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
                L      T   A    L+D +    EV ++L     
Sbjct: 259 GIIDGLRKVGGDTAKYALDNKLVDELATSTEVEKALTKQFG 299


>gi|92113719|ref|YP_573647.1| signal peptide peptidase SppA, 36K type [Chromohalobacter
           salexigens DSM 3043]
 gi|91796809|gb|ABE58948.1| signal peptide peptidase SppA, 36K type [Chromohalobacter
           salexigens DSM 3043]
          Length = 357

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 65/274 (23%), Positives = 130/274 (47%), Gaps = 19/274 (6%)

Query: 7   KIKTRYVMLSLVTLTV------VYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIE 55
           K+  R+V  +L+  ++      V+F+         PH+  + ++G I       ++ +IE
Sbjct: 69  KLFFRFVFAALIAASLAMTTYAVFFAGRDMTGAAGPHLGVVEVQGVIDAQGEASAERIIE 128

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYL 113
            +    +  S+  +++ ++SPGGS    + ++  ++++     KPV+  + ++ AS  Y 
Sbjct: 129 GLRDAWKAPSSRGVVLHINSPGGSPVQSQRVYDEVRRLAAQGDKPVVAVIEDIGASGAYY 188

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           ++ A++ I A+  SLVGSIGV++    ++  +DK+GV  +   S   KA   PFS +  +
Sbjct: 189 MASAADDIYASPASLVGSIGVIYSGFGLQEAIDKVGVERRVFTSGDNKAFLDPFSPIRDE 248

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
                Q V+D+++  F+  V   R    D    L  G IWTG +A  +GL+D +   + +
Sbjct: 249 QRAFWQTVLDTTHRQFIDDVKAGRGERLDDDPRLFSGLIWTGEQALGLGLVDGLSSLDAL 308

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
            +  +           +D+ P  +      + L 
Sbjct: 309 SRERFG------GVPRRDYTPALDPLSRLSRQLG 336


>gi|226943603|ref|YP_002798676.1| peptidase S49, SppA [Azotobacter vinelandii DJ]
 gi|226718530|gb|ACO77701.1| Peptidase S49, SppA [Azotobacter vinelandii DJ]
          Length = 325

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 60/297 (20%), Positives = 123/297 (41%), Gaps = 23/297 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSS-----HVEDNSPHVARIAIRGQIEDSQ-----ELIE 55
           ++    + +L    L  +   +S          +  H A + +RG I D +      ++ 
Sbjct: 36  RRWGIFFKLLGFAYLVALLAMFSPALSLREAARSGEHTALVEVRGMIADDEAASADNVVG 95

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV---ITEVHEMAASAGY 112
            +    +D     +++ ++SPGGS      I+  I++++   P       + ++ AS  Y
Sbjct: 96  SLRAAFKDKHTKGVVLRINSPGGSPVQSGYIYDEIRRLRAEHPDTKLYAVITDLGASGAY 155

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            ++ A++ I A + SLVGSIGV          +++LGV  +   +   KA   PF     
Sbjct: 156 YVASAADAIYADKASLVGSIGVTAASFGFVGAMERLGVERRVYTAGEHKAFLDPFQSQKE 215

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQ 230
             V+  Q+V++ ++  F+  V + R           L  G +W+G +A ++GL+D +G  
Sbjct: 216 GEVRFWQEVLEVTHRQFIDSVKQGRGERLKDKEHPELFSGLVWSGEQALQLGLVDALGSA 275

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
             V + +           + D+   +  +    K L   S + + + +    +   L
Sbjct: 276 SHVAREVVG------AEDLVDFTVRETPFDRFAKKLG--SGVVERLGVWMGLQAPVL 324


>gi|208435302|ref|YP_002266968.1| signal peptide protease IV [Helicobacter pylori G27]
 gi|208433231|gb|ACI28102.1| signal peptide protease IV [Helicobacter pylori G27]
          Length = 292

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 135/277 (48%), Gaps = 7/277 (2%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESAPSAPPNLAKLYLNGAIFSTEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P   + +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++  +A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQDRLMEL 252

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
              +    ++     +   F +    S S+++   + 
Sbjct: 253 SKVKKAYWLEKSPMER---FIEKATQSASNIITQALG 286


>gi|229543532|ref|ZP_04432592.1| signal peptide peptidase SppA, 36K type [Bacillus coagulans 36D1]
 gi|229327952|gb|EEN93627.1| signal peptide peptidase SppA, 36K type [Bacillus coagulans 36D1]
          Length = 338

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 61/282 (21%), Positives = 125/282 (44%), Gaps = 21/282 (7%)

Query: 30  HVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSS 75
              + S  +  + + G I+D+              Q  +E +++  +D     +I+ ++S
Sbjct: 54  QDGNESKKIVVLNVNGTIQDTGTTPSLLDTGEYNHQSFLEELDQAKKDSDVKGIILHINS 113

Query: 76  PGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           PGG       I   + ++K   +K +   +    AS  Y IS  +N I A+  +L GS+G
Sbjct: 114 PGGGVAESAEIHHHLMEIKKDTKKKIYVSMGPTCASGAYYISTPANKIFASPETLTGSLG 173

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V+ +         K G+    +KS   K   SP+ ++     +M+Q +V++SY+ FV+++
Sbjct: 174 VIMESVNYGKLAKKYGIDFPVIKSGEYKDIMSPYRDMTKSEKEMLQKMVNNSYNGFVKVI 233

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           SE R+IP ++   ++DGR++ G +A  + LID  G  ++   ++          ++ ++ 
Sbjct: 234 SEGRHIPKEQVRKIADGRVYDGKQALDLHLIDKYGYLDDTIAAMKKDLHLGKA-QVVEYE 292

Query: 254 PPKN----YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
                   +     K L   +       L+ Q+    L  ++
Sbjct: 293 SSGGLDSLFSASAQKMLGKEAEASGLARLLSQSNAPRLMYLY 334


>gi|189218092|ref|YP_001938734.1| Periplasmic serine protease, ClpP class [Methylacidiphilum
           infernorum V4]
 gi|189184950|gb|ACD82135.1| Periplasmic serine protease, ClpP class [Methylacidiphilum
           infernorum V4]
          Length = 331

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 79/279 (28%), Positives = 135/279 (48%), Gaps = 11/279 (3%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ----------ELIERIERISRDDSATALIVSLSS 75
             S         +A I +RG I   +          ++  +++    D     +IV+++S
Sbjct: 46  FVSGDFSTKDSKIALIHLRGLISQDEAGSFTQNSVEDIKVQLKAAREDKKVKGIIVAINS 105

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           PGG   A + I+  I+  +N KPV+  +  MAAS GY  +   + ++A + ++ GSIGV+
Sbjct: 106 PGGEVNASDVIYHEIRLTRNVKPVVIYMESMAASGGYYSAVGGSYLMANDLTITGSIGVI 165

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
            +   VK  +DK+G+     KS  MK   +P  E+ P+    +Q ++D +Y+ F+ +VS+
Sbjct: 166 MESFLVKDLMDKVGIKAFVFKSGKMKDLLNPTREMTPEEQAFVQGLIDEAYNKFISIVSK 225

Query: 196 SRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
            R+I  +K    L+DGRI+ G +A K GLID +G  E+ +     L   QS R I+   P
Sbjct: 226 ERHIDINKLKSNLADGRIFMGEDALKNGLIDGLGYFEDAFNKCKELSKVQSARLIRYVPP 285

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
            K      L +  ++  +E   P ++     G      P
Sbjct: 286 FKISNLFRLFSKGMTPKIELGYPAVRFPLSSGQLYYLYP 324


>gi|229521906|ref|ZP_04411323.1| protease IV [Vibrio cholerae TM 11079-80]
 gi|229340831|gb|EEO05836.1| protease IV [Vibrio cholerae TM 11079-80]
          Length = 616

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 128/287 (44%), Gaps = 14/287 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           +       +       ++  +A +   G I D            +   +     D +  A
Sbjct: 307 IGYYEYKTTIKPTTLTDANDIAIVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   ++ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRHEVEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +  L+ LG+    V ++P  +     + +   A + +Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGMTTGLTQGAKEAIQLGIEHGYQ 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F+ LV+E R +       L+ GR+WT  +A+ +GL+D +G  ++  +    L   +  +
Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVRLAANLAHLERYN 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           +  ++    P   +F DL      SL  D +  +    +Q L   W 
Sbjct: 546 LYWVEKPLTPVQQFFQDLLGQVRVSLGLD-VSTLLPKSLQPLAVEWQ 591



 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 114/328 (34%), Gaps = 40/328 (12%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51
           + F+   +     +LS+  +  +Y    + +       A  + + G I +          
Sbjct: 19  ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            +++E +     D++ T L+++    P  +      I +AI + 
Sbjct: 79  FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-------- 203
             +    K+   PF   +++  A +     +   +  +V  V+ +R I            
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEQF 258

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK---IKDWNPPKNYWF 260
              L +      A +K+VGL+D +  +++V Q+L              I  +        
Sbjct: 259 VAQLKEVNGDLAALSKEVGLVDELATRQQVRQTLAETFGSDGKDSYNAIGYYEYKTTIKP 318

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288
             L + +  +++  +  +M  ++ +G  
Sbjct: 319 TTLTDANDIAIVVASGAIMDGSQPRGTV 346


>gi|304396127|ref|ZP_07378009.1| signal peptide peptidase SppA, 67K type [Pantoea sp. aB]
 gi|304356496|gb|EFM20861.1| signal peptide peptidase SppA, 67K type [Pantoea sp. aB]
          Length = 620

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 71/278 (25%), Positives = 131/278 (47%), Gaps = 14/278 (5%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATAL 69
           ++++  +S          ++A +   G I D +E            +I     D    A+
Sbjct: 311 SVSIYDYSVKPAGSQQDGNIAVVMASGAIMDGEETPGNVGGDTTAAQIRDARLDPKIKAI 370

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           I+ ++SPGGS  A EAI   +   +   KP++  +  MAAS GY IS  ++ IVA  ++L
Sbjct: 371 ILRVNSPGGSVTASEAIREELAAAQAAGKPIVVSMGGMAASGGYWISTPASYIVANPSTL 430

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIG+      ++  LD +GV    V +SP+    S    +  +  QMMQ  +++ Y  
Sbjct: 431 TGSIGIFGVINTLENSLDSIGVHTDGVATSPLAD-ISTTKALPAEVQQMMQLTIENGYRN 489

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           FV LV++SR+   ++   ++ G +WTG++AK  GL+D +G  ++  +    L        
Sbjct: 490 FVGLVAKSRHKTPEQIDAIAQGHVWTGSDAKANGLVDALGDFDDAVKKAGELAKVDK--P 547

Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +  W    +  F D+    +++ ++  +P   +  +  
Sbjct: 548 MLSW-YQDDPSFLDMMLSQMNASVQAVLPDTLKAWLPA 584



 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 100/286 (34%), Gaps = 41/286 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH---VARIAIRGQIEDSQ------ 51
           + F+ + I   +++L +V    ++   S     ++P      ++ + G + D        
Sbjct: 19  LNFIREFILNIFLILLIVVCAGIWLQVSGSGGSSAPVQQGALKVDLSGVLVDKPSVSNRL 78

Query: 52  ---------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRA 89
                                ++++ I +   D +   +++ L    G      + + +A
Sbjct: 79  SKIGRQLLGASSDRLQENSLFDVVDAIRQAKGDSNIKGIVLDLREFAGGDQPSLQYVGKA 138

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           +++ ++    I  + +  + A Y ++  +  I  +    V   G      Y K  LDKL 
Sbjct: 139 LREFRDSGKPIYALGDSYSQAQYYLASYATKIYLSPQGGVDLHGFATNGLYYKTLLDKLK 198

Query: 150 VSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK---- 203
           V+    +    K+   PF   +++P A       V   +  ++  V+ +R I  ++    
Sbjct: 199 VTSHVFRVGTYKSAVEPFLRDDMSPAARDADSRWVGQLWQNYLNTVAANRQITSEQLFPG 258

Query: 204 ----TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
                  L+  +  T   A    L+D +G +    + L        
Sbjct: 259 AAAIIAGLNAVKGDTAQYALDNKLVDTLGSRAAADEELIKTFGLDK 304


>gi|24216571|ref|NP_714052.1| periplasmic serine protease [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24197892|gb|AAN51070.1| periplasmic serine protease [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 317

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 62/283 (21%), Positives = 136/283 (48%), Gaps = 23/283 (8%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVEDNSPHV------------ARIAIRGQI--------- 47
            T  +    + + +V  S ++     S               A I I G+I         
Sbjct: 10  ITFVLTTLSILIGLVNISLATTTSKYSRTTGGTFFSTAPIGAALIKIEGEIHSGHSTFES 69

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             S+ +++++  I ++ +   +++ ++SPGG+  A + ++  + +++  + ++  + +MA
Sbjct: 70  TGSESILQKLRDIEQNPNIKGILIEINSPGGTVGASQEVYNELMRLRKTRKIVVSMKDMA 129

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           AS GY I+ A++ I A   ++ GSIGV+   P +K  LD+ GV +++ K    K   S F
Sbjct: 130 ASGGYYIASAADKIFALSGTITGSIGVIAMAPNIKGLLDRYGVKMRTYKEGKYKDSLSLF 189

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
            +  P+  +M+Q ++  +Y+ F++ V++ RN        L++G+I++G +A +  L+D +
Sbjct: 190 RDSTPEEDEMIQKMLSDTYNEFIQDVAKGRNQTVKSVQNLAEGKIYSGQDAFRNKLVDEI 249

Query: 228 GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270
           GG++E  + L  L        +  +   ++ +      L    
Sbjct: 250 GGRKEALEELSRLCQYDGEIPL--YEEDESPFDRLFMMLGSKM 290


>gi|308187053|ref|YP_003931184.1| protease IV [Pantoea vagans C9-1]
 gi|308057563|gb|ADO09735.1| protease IV [Pantoea vagans C9-1]
          Length = 620

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 72/285 (25%), Positives = 130/285 (45%), Gaps = 22/285 (7%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATAL 69
           ++++  +S          ++A +   G I D +E            +I     D    A+
Sbjct: 311 SVSIYDYSVKPASSQQDGNIAVVMASGAIMDGEETPGNVGGDTTAAQIRDARLDPKIKAI 370

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           I+ ++SPGGS  A EAI   +   +   KP++  +  MAAS GY IS  ++ IVA  ++L
Sbjct: 371 ILRVNSPGGSVTASEAIREELAAAQAAGKPIVVSMGGMAASGGYWISTPASYIVANPSTL 430

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIG+      ++  LD +GV    V +SP+    S    +  +  Q+M   +++ Y  
Sbjct: 431 TGSIGIFGVINTLENSLDSIGVHTDGVATSPLAD-ISTTKALPAEVQQLMHLTIENGYRN 489

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           FV LV++SR+   ++   ++ G +WTG++AK  GL+D +G  ++  +    L        
Sbjct: 490 FVGLVAKSRHKTPEQIDAIAQGHVWTGSDAKANGLVDALGDFDDAVKKAGELAKVSK-PM 548

Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
           +  +     +    L  ++ S  ++  +P         L A W P
Sbjct: 549 LSWYQDEPTFLDMVLGQMNAS--VQAVLP-------DTLKA-WLP 583



 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 100/286 (34%), Gaps = 41/286 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH---VARIAIRGQIEDSQ------ 51
           + F+ + I   +++L +V    ++   S     ++P      ++ + G + D        
Sbjct: 19  LNFIREFILNIFLILLIVVGVGIWLQVSGSGGSSAPIQQGALKVDLSGVLVDKPSVSNRL 78

Query: 52  ---------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRA 89
                                ++++ I +   D +   +++ L    G      + + +A
Sbjct: 79  SKIGRQLLGASSDRLQENSLFDVVDAIRQAKGDSNIKGMVLDLREFAGGDQPSLQYVGKA 138

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           +++ ++    I  + +  + A Y ++  +  I  +    V   G      Y K  L+KL 
Sbjct: 139 LREFRDSGKPIYALGDSYSQAQYYLASYATKIYLSPQGTVDLHGFATNGLYYKTLLEKLK 198

Query: 150 VSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK---- 203
           V+    +    K+   PF   +++P A       V   +  ++  V+ +R +  ++    
Sbjct: 199 VTSHVFRVGTYKSAVEPFLRDDMSPAARDADSRWVGQLWQNYLNTVAANRQLTPEQLFPG 258

Query: 204 ----TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
                  L+  +  T   A    L+D +G +    Q L        
Sbjct: 259 AAAIIAGLNAVKGDTAQYALDNKLVDALGSRAAADQELVKTFGLDK 304


>gi|296272293|ref|YP_003654924.1| signal peptide peptidase SppA, 36K type [Arcobacter nitrofigilis
           DSM 7299]
 gi|296096468|gb|ADG92418.1| signal peptide peptidase SppA, 36K type [Arcobacter nitrofigilis
           DSM 7299]
          Length = 295

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 125/245 (51%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  KT   +  +  +     + S    +++ ++ +I + G I +  ++++ I + 
Sbjct: 16  LDFITKYFKTIVFLTIIYFIVSSNTTSSISSVEDNANLQKIELAGPILNVDKVLDEINKA 75

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
             + +   +++ ++SPGGS      +  AI++++  KPV+     + AS  Y  S  +N 
Sbjct: 76  KANRNIKGVLLVVNSPGGSVAPSVELSYAIKELRAVKPVVAYASGVMASGSYYASIWANK 135

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           I+A   S+VGSIGV+FQ   V+  + K+GVS +++K+   K   +     N    + ++ 
Sbjct: 136 IIANPGSMVGSIGVIFQGANVEELMKKIGVSTQTIKAGKYKEAGTFSRAWNESEKEELES 195

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           V+  +Y  F+  V+++R +        ++  I+T  +AKKVGLID VG        LY +
Sbjct: 196 VISDTYDMFITDVAKARRLKKQDNEKYANAHIFTARQAKKVGLIDEVGTISIAKNELYKI 255

Query: 241 GVDQS 245
              ++
Sbjct: 256 SKVRN 260


>gi|93005622|ref|YP_580059.1| signal peptide peptidase SppA, 36K type [Psychrobacter
           cryohalolentis K5]
 gi|92393300|gb|ABE74575.1| signal peptide peptidase SppA, 36K type [Psychrobacter
           cryohalolentis K5]
          Length = 351

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 130/292 (44%), Gaps = 15/292 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWS----SHVEDNSPHVARIAIRGQIEDSQ-----ELI 54
             K +   Y++L  +T+     + +      ++ + PH+A + ++G I         ++ 
Sbjct: 56  FFKLLTFGYILLIFLTIGRSCSTEAPTGLDGIDTSKPHLAVVELQGTISSGDVANAYDVN 115

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAG 111
           + + R  ++ ++ A+ + ++SPGGS    + I++ +  ++     K +   + +M AS  
Sbjct: 116 DALTRAFKNSNSKAVALDINSPGGSPVQSDEIWQTMMDLRKEYPDKKLYAVIGDMGASGA 175

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I    +SLVGSIGV+     VK  +DK+GV   ++ +   K   S    + 
Sbjct: 176 YYIASAADEIYVNPSSLVGSIGVIMPSYNVKGLMDKVGVEDLTITAGEYKDILSLSRPLT 235

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGG 229
               + ++ V+D+++  F+  V E R       +   L  G  WTG ++ + GL D  G 
Sbjct: 236 DYEEKHVEKVLDNTHKHFINAVKEGRGDRLKNPEQNKLFSGLFWTGEQSIEFGLADKKGS 295

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
              + + L  L    +      +    + +   L     SS+  D +P  + 
Sbjct: 296 ISSLEKQL-KLNNVVNYTPSDPFQLFMDRFAVKLGAGVGSSINLDLLPQEEG 346


>gi|217964261|ref|YP_002349939.1| exfoliative toxin [Listeria monocytogenes HCC23]
 gi|290894491|ref|ZP_06557447.1| peptidase [Listeria monocytogenes FSL J2-071]
 gi|217333531|gb|ACK39325.1| exfoliative toxin [Listeria monocytogenes HCC23]
 gi|290555946|gb|EFD89504.1| peptidase [Listeria monocytogenes FSL J2-071]
 gi|307571171|emb|CAR84350.1| signal peptide peptidase, putative [Listeria monocytogenes L99]
          Length = 337

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 72/280 (25%), Positives = 132/280 (47%), Gaps = 19/280 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76
            E     +A +++ G I+D+ +               ++++E++  DD    +++ ++SP
Sbjct: 56  EEGGDDTIAVLSVDGTIQDTGDSGSLLGGGGYDHSFFMQQLEQVRNDDYIQGVLLYVNSP 115

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG       I   I +++  +  P    +  MAAS GY IS  ++ I A++ +L GS+GV
Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           + Q       + KLGVS  ++KS   K   S    +     ++MQ ++D SY+ FV++V+
Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           + R +  +K   ++DGRI+ G +AK+ GLID  G QE+  ++L           I+   P
Sbjct: 236 KGRGMSAEKVRKIADGRIYDGRQAKENGLIDEFGYQEDALEALKKEQGLADATVIQYDAP 295

Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291
                   +    IS   + +   I L    K   +  ++
Sbjct: 296 EDFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYLY 335


>gi|167032494|ref|YP_001667725.1| signal peptide peptidase SppA, 36K type [Pseudomonas putida GB-1]
 gi|166858982|gb|ABY97389.1| signal peptide peptidase SppA, 36K type [Pseudomonas putida GB-1]
          Length = 329

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 65/276 (23%), Positives = 128/276 (46%), Gaps = 16/276 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIE 58
           +  K+ T   +  ++ L             ++ H A + +RG I D     +  +++ + 
Sbjct: 43  IFFKLLTFVYLFGILVLFTPLMDMDKAASRSASHTALVEVRGVIADQEAASADNIVKSLR 102

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT---EVHEMAASAGYLIS 115
              +D    A+++ ++SPGGS      ++  I++++   P I     + ++ AS  Y I+
Sbjct: 103 DAFKDSKTKAVVMRINSPGGSPVQAGYVYDEIRRLRAEYPAIKLYAVISDLGASGAYYIA 162

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I A + SLVGSIGV          ++KLGV  ++  S   KA   PFS   P+  
Sbjct: 163 SAADEIYADKASLVGSIGVTAAGYGFVGTMEKLGVERRAYTSGEHKAFLDPFSPEKPEET 222

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
           +  Q V+D++++ F+ +V + R           L  G +W+G +AK +GL+D +G    V
Sbjct: 223 RFWQGVLDTTHNQFIAMVKQGRGERLKDKEHPELFSGLVWSGEQAKALGLVDGLGSASYV 282

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
            + +         +++ D+   ++ +    K +  S
Sbjct: 283 AREIVG------EKELVDFTVQESPFDRFSKRVGAS 312


>gi|320354585|ref|YP_004195924.1| signal peptide peptidase SppA, 67K type [Desulfobulbus propionicus
           DSM 2032]
 gi|320123087|gb|ADW18633.1| signal peptide peptidase SppA, 67K type [Desulfobulbus propionicus
           DSM 2032]
          Length = 621

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 68/279 (24%), Positives = 127/279 (45%), Gaps = 20/279 (7%)

Query: 30  HVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSA 80
             +     +  IA  G I           + +LI+RI +  +D    A+++ +++ GGSA
Sbjct: 321 DTKGKKELIGIIAASGNILPGEGAVGQIGADDLIKRIRKARQDQRIKAIVLRITTGGGSA 380

Query: 81  YAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
            A E I + + + K   K V+  +  MAAS GY ++  +++IVAA T+L GSIG+    P
Sbjct: 381 LASELIRQELAQAKKEGKIVVVSMGAMAASGGYWLAADADLIVAAPTTLTGSIGIFGAVP 440

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            V+  L  LG+    V ++ +    +P + ++P+    +   V   Y  F+ +V++ R +
Sbjct: 441 TVEKTLANLGIHGDGVGTTDIAHFGNPATTMSPEEETALHMEVMQGYRRFIDIVAQGRKM 500

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS----------IRKI 249
             ++   +++GR+W G  A K+GL+D +G  EE       L                  +
Sbjct: 501 RPEQVEKIAEGRVWDGTTALKLGLVDKLGNLEEAIAEAAKLAKVPEENGLFIELTPDNYL 560

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
           + +   +      L  L+ S+ L  ++    Q +   L 
Sbjct: 561 ERFKRVEQPIEALLARLTGSAALPVSLRRTAQEQFDFLL 599



 Score = 72.3 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 98/277 (35%), Gaps = 36/277 (12%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------- 51
           + +  + L+LV   +    ++  ++  +     ++  G I + +                
Sbjct: 25  VLSNLLFLALVLAILTVAFYTPKIDVPAACALVVSPAGDIVEERSPMDPMTRILGHLSGT 84

Query: 52  ---------ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVIT 101
                    ++++ +   S D     L+++ +  GG S     AI  A++  K     + 
Sbjct: 85  PLEKDTFLQDILDGVNAASGDARIKMLVINTNRMGGASLDQLRAIGTAVEAFKKTGKEVI 144

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
            + +    A Y ++  ++ I       V   G      Y++  LDKL +++   +    K
Sbjct: 145 ALGDSFNQAQYYLASWADKIYLHPMGAVDIRGFSVFRLYLREMLDKLAINMHVFRVGTFK 204

Query: 162 AEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGR 211
           +   PF  ++++P+  +     + + +  +   +   R +  +            L+   
Sbjct: 205 SAVEPFLRNDMSPEDREANSLWLGNLWQVYRDDIVRHRKLDAEVFVDNVNQMVTQLASVG 264

Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
              G  A   GL+D +   +E+ Q L       +  K
Sbjct: 265 GDRGRLAVATGLVDGLKSHQELEQLLKEHIGVSADAK 301


>gi|257064987|ref|YP_003144659.1| signal peptide peptidase SppA, 36K type [Slackia heliotrinireducens
           DSM 20476]
 gi|256792640|gb|ACV23310.1| signal peptide peptidase SppA, 36K type [Slackia heliotrinireducens
           DSM 20476]
          Length = 382

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 71/279 (25%), Positives = 118/279 (42%), Gaps = 14/279 (5%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSL 73
            + +              VA I I G I+        + L + + +   DD+  A+++ +
Sbjct: 103 FSSLGSYGYGETTTYGDTVAVIDIDGTIQYDGTTNSPEGLRDVLTQAEEDDNIKAIVLHV 162

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           +S GG+A AGE +   +      KPV+     + ASA Y+IS  S+ I    T+ +GSIG
Sbjct: 163 NSGGGTATAGEEMS--LLVADCTKPVVVSSASINASAAYMISSQSDYIFVNHTTAIGSIG 220

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
            + Q   V   ++KLGV + ++ S+  K        +  + +   QD+VD     F+ LV
Sbjct: 221 TVMQTYDVSELMEKLGVDVINIASAESKDSSYGTRPLTDEEIAYYQDLVDKINAQFIGLV 280

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDW 252
           SE R +   +   L+ G  +TG +A   GL D VG  ++       LG  +     + + 
Sbjct: 281 SEGRGMDVSEVQALATGMEFTGDDAVDNGLADEVGTYDDALAKAAELGGIEGDDYDVVNL 340

Query: 253 NPPKNYWFCDLKNLS-----ISSLLEDTIPLMKQTKVQG 286
                    DL  L           ED I  ++  + QG
Sbjct: 341 YVSGYGDMSDLLGLMGYSSNTKISAEDLIAALELLQSQG 379


>gi|94266545|ref|ZP_01290231.1| Peptidase S49, SppA [delta proteobacterium MLMS-1]
 gi|93452820|gb|EAT03346.1| Peptidase S49, SppA [delta proteobacterium MLMS-1]
          Length = 306

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 123/249 (49%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79
           L           + +   +  + ++G I  + +L+ ++    R D+  A+I+ + SPGG+
Sbjct: 34  LLGSLAGGFFDSKSHREGIGVVEVKGVITSADQLLAQLAEFGRRDNIKAIILRIDSPGGA 93

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
             A + +F  +++V  +KPV+  +  +AAS G   +  +  IVA   +L GSIGV+ ++ 
Sbjct: 94  VGASQELFAEVKRVNQQKPVVAAMGSVAASGGLYAALGAERIVANPGTLTGSIGVIIKFA 153

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            ++   +++G   +++KS  +K   +P   + P+  QM+Q++VD  +  F+  V+  R++
Sbjct: 154 NLEELFERIGYRSETIKSVDLKDSGAPDRPLAPEERQMLQEMVDDVHDQFIADVAADRDL 213

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
                    DGRI++G +A ++GL+D +G   +       LG     R  +   PP+  +
Sbjct: 214 STTTVRAFGDGRIFSGNQALELGLVDQLGNFNDAAMLAAELGGLDPSRVPELIYPPRRDF 273

Query: 260 FCDLKNLSI 268
                 L  
Sbjct: 274 SLLSLLLGS 282


>gi|170077749|ref|YP_001734387.1| signal peptide peptidase SppA, 67K type [Synechococcus sp. PCC
           7002]
 gi|169885418|gb|ACA99131.1| signal peptide peptidase SppA, 67K type [Synechococcus sp. PCC
           7002]
          Length = 594

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 120/270 (44%), Gaps = 10/270 (3%)

Query: 33  DNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAYAG 83
            +   VA +   G I   +          L  ++  + +D     +++ ++SPGGSA A 
Sbjct: 306 TSENTVAVVYAEGNIVGGEGTPDTIGGDSLSRQLRELRQDPEVKVVVLRINSPGGSAIAS 365

Query: 84  EAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I R ++ ++   KPVI  + ++AAS GY I+  S+ I A   ++ GSIGV    P ++
Sbjct: 366 EIILRELKLIREADKPVIVSMGDLAASGGYWIATESDRIFAQPNTITGSIGVFGILPNIQ 425

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
              +  G++  SV++  +    +         + + Q+ V+  Y  F+  VS +R +   
Sbjct: 426 TIGNNNGLTWDSVQTGELANLGTASRPKTEAEMAIFQNFVNDIYGKFLDRVSAARGLTEA 485

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           +   ++ GR+W+G +A+ + L+D +GG                   ++++  P+ +    
Sbjct: 486 EVRQIAQGRVWSGEDAQAIRLVDELGGLSAAIAYAVDTAELGEDFTVQEYPRPQTWEEEI 545

Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
             NL  + +        +  ++Q    +W 
Sbjct: 546 FSNLFGAQIEASDPLSQEWLRLQASIKLWR 575



 Score = 77.7 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 99/297 (33%), Gaps = 28/297 (9%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE---------------------DSQELI 54
           + + L  ++ +           +    + G I                        +++ 
Sbjct: 29  AFIALIALFSAQEGGGRPKENSILIFNM-GTIIQDRDPSSSIGNVIAGDFPETLSLRDVT 87

Query: 55  ERIERISRDDSATALIVSL--SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           E I   + DD  T L +    +S  G A     + +A+Q  K     I           Y
Sbjct: 88  ESIRAAAEDDKITGLFLDGRQNSLNGYAT-LREVRQALQDFKAAGKKIYAYDVEMTEREY 146

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEV 170
            +S  ++ I      +V   G+  +  + K  LD+ G+ ++ V+    K+   PF   E 
Sbjct: 147 YLSSLADEIWLNPLGVVEMNGLGSEQLFFKGALDQYGIGVQVVRVGDYKSAVEPFTQEEF 206

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGG 229
           +P+  Q  + ++   +  F   V+  R         L+D   I     A++  L+  +  
Sbjct: 207 SPENRQQTEALLSDLWTDFKDTVAGDRPFAATLPQSLADTQGILLPEVAQQEQLVTRLAY 266

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
            +E+   L      +  + +   +        DL  + ++S     +   +   V G
Sbjct: 267 FDEILAELKTFTGTELDKDLPQMDLADYSLEQDLAQIGVTSENTVAVVYAEGNIVGG 323


>gi|304570504|ref|YP_003004.2| PfaP [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 290

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 126/241 (52%), Gaps = 11/241 (4%)

Query: 39  ARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
           A I I G+I           S+ +++++  I ++ +   +++ ++SPGG+  A + ++  
Sbjct: 25  ALIKIEGEIHSGHSTFESTGSESILQKLRDIEQNPNIKGILIEINSPGGTVGASQEVYNE 84

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           + +++  + ++  + +MAAS GY I+ A++ I A   ++ GSIGV+   P +K  LD+ G
Sbjct: 85  LMRLRKTRKIVVSMKDMAASGGYYIASAADKIFALSGTITGSIGVIAMAPNIKGLLDRYG 144

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           V +++ K    K   S F +  P+  +M+Q ++  +Y+ F++ V++ RN        L++
Sbjct: 145 VKMRTYKEGKYKDSLSLFRDSTPEEDEMIQKMLSDTYNEFIQDVAKGRNQTVKSVQNLAE 204

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           G+I++G +A +  L+D +GG++E  + L  L        +  +   ++ +      L   
Sbjct: 205 GKIYSGQDAFRNKLVDEIGGRKEALEELSRLCQYDGEIPL--YEEDESPFDRLFMMLGSK 262

Query: 270 S 270
            
Sbjct: 263 M 263


>gi|261403174|ref|YP_003247398.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus
           vulcanius M7]
 gi|261370167|gb|ACX72916.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus
           vulcanius M7]
          Length = 311

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 73/286 (25%), Positives = 145/286 (50%), Gaps = 23/286 (8%)

Query: 5   LKKIKTRYVMLSLVT--------LTVVYFSWSSHVEDNSPHVARIAIRGQIE-------- 48
           +KKI    + L L+         L ++ FS  +        +A++ +  +I         
Sbjct: 1   MKKIYVVIIALFLILVCLLAVGVLAILSFSGENIDLLGGNKIAKVYLCNEIYFDYSQGDG 60

Query: 49  -------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
                  D++  I  ++++ +D+S   +++ ++SPGG   A E + R + ++  +KPV+ 
Sbjct: 61  LFPSEKKDARYYINLLDKLEKDNSVKGVLLIVNSPGGEVIASEKLARKVAELAKKKPVVV 120

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
            V ++ AS  Y+ S  +N IVA + S+VGSIGV     +    + KLG+++ ++K+   K
Sbjct: 121 YVEDLDASGAYMASVPANYIVAEKHSIVGSIGVRMDIIHYYGLMKKLGINVTTIKAGKYK 180

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221
              SP+  +  +  + +Q +++ +Y  FV+ V++ R++P + T  ++DG+I++G +AKKV
Sbjct: 181 DIGSPYRPMTKEEKEYLQKMINETYIDFVKWVAKYRHLPLNYTFKIADGKIYSGEDAKKV 240

Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           GL+D VG +E   + L  L    +   ++         F    +L 
Sbjct: 241 GLVDEVGTEETALKKLEQLANVSNPEIVEYGLEENRGLFGLTYDLG 286


>gi|296491980|ref|YP_003662447.1| peptidase S49 SppA [Xenorhabdus nematophila ATCC 19061]
 gi|289176867|emb|CBJ93038.1| Peptidase S49, SppA [Xenorhabdus nematophila ATCC 19061]
          Length = 325

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 126/284 (44%), Gaps = 16/284 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSS----HVEDNSPHVARIAIRGQIE-----DSQELI 54
           +L+ ++    +L +V   ++  +         +  +PH A I IRG+I      D+  LI
Sbjct: 40  MLRVLRASGFVLLMVGFIILASNPGGMPWQSAKAAAPHTAYINIRGEIAAGTLADADHLI 99

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAG 111
             I+    + ++ A+++ ++SPGGS      I+  +   + +   K V   + ++ AS G
Sbjct: 100 PSIQAAFDNPNSQAVVLRINSPGGSPVQAGRIYEEVKAQRALHPEKKVYAIIDDIGASGG 159

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ +++ I A   SLVGSIGV+         +DKLG+  +++ S   KA   PFS + 
Sbjct: 160 YYIASSADEIYADRASLVGSIGVISSGFGFTGLMDKLGIERRAITSGEHKALLDPFSPLT 219

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
                  + V+  ++  F+  V   R         +  G +W G +AK++GLID +GG  
Sbjct: 220 ADMKTFWEGVLSKTHQQFIERVKAGRGERLKDDQKVFSGLLWNGEQAKEIGLIDGLGGLN 279

Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
            V + +            +D              L  SS +++ 
Sbjct: 280 SVARDVIHQTSLVDYTPTEDIIRR----LTQRAKLEASSFVQEL 319


>gi|148284225|ref|YP_001248315.1| periplasmic serine proteases (ClpP class) [Orientia tsutsugamushi
           str. Boryong]
 gi|146739664|emb|CAM79457.1| Periplasmic serine proteases (ClpP class) [Orientia tsutsugamushi
           str. Boryong]
          Length = 302

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 81/288 (28%), Positives = 146/288 (50%), Gaps = 11/288 (3%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVE-----DNSPHVARIAIRGQIEDSQELIERIERISRD 63
           K + + L L+T  VV F + + V          ++A I I   I D  +L   + +I  D
Sbjct: 20  KWKILTLLLITAIVVLFIFRNRVGYSPSLATGDYIANIQIDDLIYDDIKLNNLLHQIKND 79

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
           D A ALI+ + SPGG+    E I+  ++ + N KPV+  +  +AAS GYL++ A++ I+A
Sbjct: 80  DKAKALILHIDSPGGTVAGSEKIYGILRSISNSKPVVAVLGTVAASGGYLVALAADYIIA 139

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
            ++++ GSIG++   P +  F +K+G+   + KS  +KA PS   +V P   +    +++
Sbjct: 140 QKSTVTGSIGIVHFSPEITEFGEKIGIKFHTFKSGELKAAPSLTEKVTPAVHEATMTLIN 199

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
             Y +FV LV+E R +  ++ L ++DG+ +TG +A  + LID +G  E+    L      
Sbjct: 200 DMYDFFVELVAERRQMSPEQVLKVADGKAYTGRQALSLNLIDALGTTEDALSWLQQEKKL 259

Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
               ++ + +              I  L  +   L   +K+ G+ A++
Sbjct: 260 SLDLRVIELHTQNK------LAGYIKLLQNNMHKLFFGSKINGVMALY 301


>gi|315635928|ref|ZP_07891190.1| signal peptide peptidase SppA [Arcobacter butzleri JV22]
 gi|315479907|gb|EFU70578.1| signal peptide peptidase SppA [Arcobacter butzleri JV22]
          Length = 294

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 135/284 (47%), Gaps = 9/284 (3%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA---RIAIRGQIEDSQELIERI 57
           ++F+ K  KT    +  +T+  V F  S      +   A   +I + G I D  + +E I
Sbjct: 16  LDFITKYFKT----IVFLTIIYVVFFNSDEERITTKSTANLQKIELVGPIIDVSKTLENI 71

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117
           E+   D +   ++  + SPGG+      +  AI+++K  KPV+     + AS  Y  S  
Sbjct: 72  EKAKTDTNIKGVLFVVDSPGGAVAPSVEVAYAIKELKQIKPVVVYASGVIASGSYYASIW 131

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           ++ I+A   S+VGSIGV+ Q    K  +DK+G+  ++VK+   K   +P  +      + 
Sbjct: 132 ADKIIANPGSMVGSIGVIMQGVNTKELMDKIGIQTQTVKAGKYKESGTPTRKWTEFEEKQ 191

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           +Q V+D +Y+ F+  V+ +RN+        +D +I+T  +AK VGL+D V       ++L
Sbjct: 192 LQSVIDDTYNMFITDVATARNLDIKNYTSFADAKIFTSKQAKDVGLVDEVANITVAQKTL 251

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
             L   ++   +         +   L + ++S +  + +  +K 
Sbjct: 252 AELSKVEN--PVWKKEDKFEKFMDKLVSEAVSQISMNFVTGLKA 293


>gi|87303026|ref|ZP_01085830.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp. WH
           5701]
 gi|87282522|gb|EAQ74481.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp. WH
           5701]
          Length = 270

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 131/265 (49%), Gaps = 6/265 (2%)

Query: 33  DNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            +   +ARIAI G I     + +++ + ++   +   AL++ + SPGG+    + I  AI
Sbjct: 8   KSRKSMARIAIEGAISGPTRERVVKALRQVEERE-FPALLLRIDSPGGTVGDSQEIHAAI 66

Query: 91  QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
            +++++   V+     ++AS G  +  A+  IVA   ++ GSIGV+ +   +   L+++G
Sbjct: 67  GRLRSKGCRVVASFGNISASGGVYVGVAAEKIVANPGTITGSIGVILRGNNISKLLERIG 126

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +S ++VKS   K   SP   +      ++Q ++DSSY  FV  V+  R +   +    +D
Sbjct: 127 ISFETVKSGLYKDILSPDRALTADERALLQGLIDSSYSQFVEAVATGRGLNESEVRGFAD 186

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR-KIKDWNPPKNYWFCDLKNLSI 268
           GR+++GA+A  +GLID +G +E   +    L      + +   +  P       +  L++
Sbjct: 187 GRVFSGAQAIALGLIDELGDEEHARRLAARLAGLDETKTQPVIFGKPPKRLAGLIPGLNL 246

Query: 269 SSLLEDTIPLMKQTKVQGLWAVWNP 293
              L+  + +      Q LW +W P
Sbjct: 247 LGGLQQALSMELAWCGQPLW-LWRP 270


>gi|157736751|ref|YP_001489434.1| protease IV (PspA) [Arcobacter butzleri RM4018]
 gi|157698605|gb|ABV66765.1| protease IV (PspA) [Arcobacter butzleri RM4018]
          Length = 294

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 136/284 (47%), Gaps = 9/284 (3%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA---RIAIRGQIEDSQELIERI 57
           ++F+ K  KT    +  +T+  V F  S     ++   A   +I + G I D  + +E I
Sbjct: 16  LDFITKYFKT----IVFLTIIYVVFFNSDEERISTKSTANLQKIELVGPIIDVSKTLENI 71

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117
           E+   D +   ++  + SPGG+      +  AI+++K  KPV+     + AS  Y  S  
Sbjct: 72  EKAKTDTNIKGVLFVVDSPGGAVAPSVEVAYAIKELKQIKPVVVYASGVIASGSYYASIW 131

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           ++ I+A   S+VGSIGV+ Q    K  +DK+G+  ++VK+   K   +P  +      + 
Sbjct: 132 ADKIIANHGSMVGSIGVIMQGVNTKELMDKIGIQTQTVKAGKYKESGTPTRKWTEFEEKQ 191

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           +Q V+D +Y+ F+  V+ +RN+        +D +I+T  +AK VGL+D V       ++L
Sbjct: 192 LQSVIDDTYNMFITDVATARNLDIKNYTSFADAKIFTSKQAKDVGLVDEVANITVAQKTL 251

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
             L   ++   +         +   L + ++S +  + +  +K 
Sbjct: 252 AELSKVEN--PVWKKEDKFEKFMDKLVSEAVSQISMNFVTGLKA 293


>gi|114799830|ref|YP_761326.1| signal peptide peptidase SppA, 67K type [Hyphomonas neptunium ATCC
           15444]
 gi|114740004|gb|ABI78129.1| signal peptide peptidase SppA, 67K type [Hyphomonas neptunium ATCC
           15444]
          Length = 592

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 115/286 (40%), Gaps = 19/286 (6%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISR 62
            + +  ++  +     +P +A +   G I                  S  +   I   + 
Sbjct: 276 MIDLAVYAAPTKYNSKAPLIAVVGGEGPIVTGGADGGSPFSDAPAFASDTVARAILDAAE 335

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNII 121
           D+   A++  + SPGGS  A + I+RA+++ K   KPV+  +   AAS GY +S  ++ I
Sbjct: 336 DEDVKAIVFRVDSPGGSPTASDQIWRAVERAKEAGKPVVVSMGAYAASGGYYVSTGADAI 395

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
           +A   +L GSIG+      +    +K+GV+  SV      A     S         ++  
Sbjct: 396 LANRATLTGSIGIFGGKLALDGTFNKIGVTFDSVTVGGDFASAWGTSPFTETQEAEVKAS 455

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           +   Y  F+  V   R++ YD+   ++ GR+WTG  A + GL+D +G   +  +    L 
Sbjct: 456 LKRGYDRFLNHVGAGRDMTYDEVHEVARGRVWTGEAALQQGLVDEIGTFMDAIEKAKELA 515

Query: 242 VDQSI--RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
             ++    ++  +   K           +S+       ++      
Sbjct: 516 GIEADVKPRLAFYPYRKTGLEALEDLFGVSAETARAAAVISTIAGD 561



 Score = 93.5 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 87/267 (32%), Gaps = 29/267 (10%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIR-------------------GQIE 48
           +    ++      T++  + SS        +  + +                    G I 
Sbjct: 15  MILFIIVGFFFLFTLIGVAASSKPPHPDDIILTLDLNAAYPDQAPAGGLAALSGTPGFI- 73

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA- 107
              +L+ +++    DDS   L +  +  G      E +  AIQ  K     +    +   
Sbjct: 74  ---DLLLKLKEAESDDSVKGLFIRGADYGFGTTRAEELREAIQSFKASGKFVIAHSQGMF 130

Query: 108 ---ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164
                + +    A++ I     + +   GV+F+  + K   + + +  +       K  P
Sbjct: 131 GSSGPSAFHSISAADEIWMQPGTDLMVTGVVFETEFYKGLFENIDLQPQVYPFYEYKNAP 190

Query: 165 SPFSEV--NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVG 222
           + ++E          M+ +  S +   +  ++E R     +     +        A ++ 
Sbjct: 191 NSYNETSYTEPHRMAMEALATSIWTTALEEIAEDRGTSAGQLRAALESGPKPAETALELK 250

Query: 223 LIDVVGGQEEVWQSLYALGVDQSIRKI 249
           L+D +G  E+  ++  A   +     I
Sbjct: 251 LVDKLGWPEDAEEAAIARAGNDDAEMI 277


>gi|194367369|ref|YP_002029979.1| signal peptide peptidase SppA, 67K type [Stenotrophomonas
           maltophilia R551-3]
 gi|194350173|gb|ACF53296.1| signal peptide peptidase SppA, 67K type [Stenotrophomonas
           maltophilia R551-3]
          Length = 640

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 117/257 (45%), Gaps = 12/257 (4%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           D+ P VA +   G+I            +     +     D++  ++++ ++SPGG  +A 
Sbjct: 338 DSRPQVAVVVAAGEISGGDLPAGRIGGESTSALLRAARDDENVKSVVLRVNSPGGEVFAS 397

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I R +  ++   KPV+  + ++AAS GY IS  ++ I A  +++ GSIG+    P   
Sbjct: 398 EQIRREVVALQAAGKPVVVSMGDLAASGGYWISMNADRIYADPSTITGSIGIFGMVPNFS 457

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LDK+GV    V ++           ++P   Q++Q V++  Y  F   V+++R  P +
Sbjct: 458 RALDKIGVHTDGVGTTRFAGAFDVTRPMDPAVGQVIQSVINKGYADFTGRVADARKKPVE 517

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG--VDQSIRKIKDWNPPKNYWF 260
               ++ GR+W+GA+AK+ GL+D  GG ++      +          +++        + 
Sbjct: 518 AVDEVARGRVWSGAQAKERGLVDAFGGLKDAVADAASRAKLGKADAYRVRYIEKAATPFA 577

Query: 261 CDLKNLSISSLLEDTIP 277
             +   + S      + 
Sbjct: 578 QFVSGFAGSRAGAWMLS 594



 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 76/208 (36%), Gaps = 12/208 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAAS 109
           ++L+  IE    D     +++ L     S +A    +  A+Q ++     +    E    
Sbjct: 106 RDLLRVIESAKEDKKIERVVLELDKLQPSGFASLREVAAALQDLRASGKQLVAYSESMGQ 165

Query: 110 AGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167
           + YL++  ++ +       V   G+  ++  +     DKLGV +   K    K+   P+ 
Sbjct: 166 SQYLLAAQADEVYLDPMGSVVLEGLGRYRQYFRTGLQDKLGVDVHLFKVGEYKSAAEPYV 225

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV--------LSDGRIWTGAEA 218
               +P + +     ++  +  ++  ++++R +   +           +S         A
Sbjct: 226 LDAASPASKEADLFWMNDVWQRYLGDIAKARRLDPAQLAAGIDTLPEGISAAGGDLAKFA 285

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSI 246
            +  L+  +  +EE    +   GV    
Sbjct: 286 LQQKLVTSLKTREEFEDLMIERGVADDD 313


>gi|238794514|ref|ZP_04638123.1| Protease 4 [Yersinia intermedia ATCC 29909]
 gi|238726197|gb|EEQ17742.1| Protease 4 [Yersinia intermedia ATCC 29909]
          Length = 616

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 123/272 (45%), Gaps = 18/272 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSA 80
                   +A I   G I D            L  +I +   D    A+I+ ++SPGGS 
Sbjct: 318 PTPQQGEQIAVIFANGAIIDGPQTPGNVGGDSLAAQIRQARLDPKIKAVILRVNSPGGSV 377

Query: 81  YAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
            A E I   +  ++   KP++  +  MAAS GY IS  +N IVA+ ++L GSIG+     
Sbjct: 378 SASELIRSELAALRAANKPLVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVIN 437

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
             +  L+ +GV    V +SP+       + + P+  QMMQ  +++ Y  F+ LV+ SR+ 
Sbjct: 438 TFQNSLESIGVHTDGVATSPLADISVTKN-LPPEFSQMMQINIENGYKTFIDLVATSRHK 496

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPKN 257
             ++   ++ G +W G +AK  GL+D +G  ++  + +  L   +   +    D      
Sbjct: 497 TPEQVDQIAQGHVWLGIDAKNNGLVDQLGDFDDAVKKVAELAKLKTWQLNWFVD-----E 551

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
               DL    +S+ ++  +P   Q  +    +
Sbjct: 552 PSLSDLIFGQMSASVQAMLPAAIQAWIPAPIS 583



 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 108/315 (34%), Gaps = 44/315 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + FV + I   +++L ++    +Y  + S   +       + + G + D           
Sbjct: 19  LNFVREFILNLFLILLILVGVGIYLQFQSKPAEPVKGALLVNLSGVVVDQPAVNNKLRQL 78

Query: 52  ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92
                             +++E I     D++ T L++SLS   G+     + I +A+++
Sbjct: 79  GREFLGASSNRLQENSLFDIVETIRLAKTDNNITGLVLSLSDFTGADQPSLQYIGKALRE 138

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            ++    I  + +      Y ++  +N I  +    V   G      Y K  L+KL V+ 
Sbjct: 139 FRDSGKPIYAIGDSYNQTQYYLASFANKIYLSPQGAVDLHGFASNNLYYKSLLEKLKVTT 198

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203
              +    K+   P    +++P A +     +   +  ++  V+ +R +  ++       
Sbjct: 199 NIFRVGTYKSAVEPMIRDDMSPAAREADSRWIGGLWQNYLTAVAANRQLTPEQLFPGAAG 258

Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPK 256
               L          A    L+D +  + EV   L           D +   I D+ P  
Sbjct: 259 VISGLQTAGGSPAKYALDSKLVDTLASRPEVETELVKTFGWDKKNNDFNYVSIYDYQPVP 318

Query: 257 NYWFCDLKNLSISSL 271
                +   +  ++ 
Sbjct: 319 TPQQGEQIAVIFANG 333


>gi|57237078|ref|YP_178090.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           RM1221]
 gi|57165882|gb|AAW34661.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           RM1221]
 gi|315057509|gb|ADT71838.1| protease IV (PspA) [Campylobacter jejuni subsp. jejuni S3]
          Length = 298

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 66/275 (24%), Positives = 129/275 (46%), Gaps = 2/275 (0%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64
           +K I T +    L+ + +     S++   N  ++ RI ++G+I DS  ++E+I     D 
Sbjct: 15  IKFINTYFKTFVLLLIVIWILMPSANSSSNLANLERIDLKGEIFDSSAVLEKIINAKNDS 74

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
           +   ++  + SPGG+      +  AI+ +K +KPV+       AS  YL    +N I+A 
Sbjct: 75  NIKGVLFVIDSPGGAFAPSMELALAIKDLKIKKPVLVYASGTMASGSYLAGVGANKILAN 134

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             S +GSIGV+ Q   +    +KLG+  +++++   K+  +     N      +Q ++D 
Sbjct: 135 PASFIGSIGVIMQGADLSGLANKLGIKEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQ 194

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           SY  F   V + R +  +K    ++ R++  A+AK++GLID +   E   + L  L    
Sbjct: 195 SYDLFTGFVVKERALDLNKKDQWANARVFLAAKAKELGLIDELSNYENAKKELEKLANVS 254

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
           +   +       + +   L+  + S + +  I + 
Sbjct: 255 N--PVWKEEDKIDKFLNRLEGQTSSLISKSLIEIA 287


>gi|32267191|ref|NP_861223.1| hypothetical protein HH1692 [Helicobacter hepaticus ATCC 51449]
 gi|32263244|gb|AAP78289.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 294

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 60/282 (21%), Positives = 131/282 (46%), Gaps = 7/282 (2%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K   ++   +   ++        +  SP++A++ +   I +S+    +IE+I
Sbjct: 15  LDFINKYFK--VIVFLFIAF-LILAPDIDKSDSVSPNLAKLYLTTPIYESESFAAQIEKI 71

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
           +++ +   +++ + SPGG+  A   I   I+ +  + PVI       AS  Y     +N 
Sbjct: 72  TKNKNIKGVLLIIDSPGGTVGASIEIADMIKSLAQKMPVIAYTQGSMASGSYYAGMYANE 131

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           I A   +L+GSIGV+F    +K  LDK+G+  + +K+   K   +   + + +    +++
Sbjct: 132 IYANRGALIGSIGVIFNGLNIKEMLDKIGIKEQGIKAGSYKEVGTSMRQWSEEEKLFLEN 191

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           ++   Y  F + V ++R            ++G++++  +A ++GLID VG  +E   +L 
Sbjct: 192 LLQEQYELFRKDVIKARGSRLKVVDYREFAEGKVFSAHKALQLGLIDKVGSMQEAVATLQ 251

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
                +    +K        +     + + S +L  + P +K
Sbjct: 252 QHTGVKEAIWLK--KDKFEVYMDKFLDSASSKILSLSAPKLK 291


>gi|222823269|ref|YP_002574842.1| protease IV [Campylobacter lari RM2100]
 gi|222538490|gb|ACM63591.1| protease IV [Campylobacter lari RM2100]
          Length = 297

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/273 (24%), Positives = 137/273 (50%), Gaps = 3/273 (1%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWS-SHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
           ++  I T +     + +  +  S S  + + ++ ++A+I ++G+I D+  L+E+I ++  
Sbjct: 14  IISFINTYFKTFVFLFIVFLILSPSKDNTKLSNANLAQINLKGEINDASTLLEQIYKLKD 73

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           D++   ++  + SPGG+      I  AIQ +K +KPV+       AS  YL +  +N+I+
Sbjct: 74  DNAIKGVLFYIDSPGGAFAPSMEIALAIQDLKAKKPVVAYAGGTIASGSYLSAVGANMII 133

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A   S VGSIGV+ Q         K+G+S +++K+   K   +   + + +  + +Q++ 
Sbjct: 134 ANPASFVGSIGVIMQGFNASELAQKIGISDQTIKAGTYKEAGTFMRKWSKEEKEFLQNLA 193

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           + SY  F   V+++RN+  ++T   +D +++   EA K+ LID VG  E   + +  L  
Sbjct: 194 NQSYILFTNFVAKNRNLDLNQTKSWADAKVFLANEALKLKLIDKVGNYELAKKEVEKLAK 253

Query: 243 DQSIRKIKD--WNPPKNYWFCDLKNLSISSLLE 273
            ++    K+   +           +   ++L +
Sbjct: 254 VKNPIWQKEDAIDKFLKRLEEQSASFFANTLAQ 286


>gi|307544582|ref|YP_003897061.1| peptidase [Halomonas elongata DSM 2581]
 gi|307216606|emb|CBV41876.1| putative peptidase [Halomonas elongata DSM 2581]
          Length = 361

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 117/265 (44%), Gaps = 13/265 (4%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGG 78
            F+    VE   PH+  + + G I       +  +IE IER  +   A A+++ + SPGG
Sbjct: 96  LFAAQGPVEAKGPHLGVVEVEGVIDRESPASASRVIEGIERAWKAPGAKAVVLHIDSPGG 155

Query: 79  SAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           S    + I+  + +++    KP+I  V ++ AS  Y I+ A++ IVAA  SLVGSIGV+ 
Sbjct: 156 SPVQSQRIYDEVMRLRESGDKPIIAVVEDIGASGAYYIASAADEIVAAPASLVGSIGVIH 215

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                +  + +LG+  +   +   K    PF+++ P   +  Q+V+ +++  F+  V   
Sbjct: 216 AGFGFEQAIQRLGIERRVFTAGENKDFLDPFTDIEPSQQRFWQEVLATTHKQFIDDVKAG 275

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R         L  G IWTG +A  +GL+D +G  +                +  D+ P  
Sbjct: 276 RGDRLADDERLFSGLIWTGEQALDLGLVDRLGNLD------GEERRLLEEPRRHDYTPQL 329

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQ 281
           + +    +           +   + 
Sbjct: 330 DPFERLSRRFGSVMASVLGLSSTEA 354


>gi|257067187|ref|YP_003153443.1| signal peptide peptidase SppA, 36K type [Anaerococcus prevotii DSM
           20548]
 gi|256799067|gb|ACV29722.1| signal peptide peptidase SppA, 36K type [Anaerococcus prevotii DSM
           20548]
          Length = 327

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 131/268 (48%), Gaps = 6/268 (2%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
              +    +  + + G I  +     ++E ++    D     +I++++SPGGS YA E I
Sbjct: 55  QGTNPKEKIKVVDVDGVISSNDANDFVVEELKNAKEDPLVKGVILNVNSPGGSVYASERI 114

Query: 87  FRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
              I+ + +  KPV T + EMAAS GY IS  ++ I A+  +  GSIGV+ Q   ++   
Sbjct: 115 ANQIKALKEAEKPVYTVMGEMAASGGYYISALTDRIYASNETWTGSIGVIIQSYSLQGLF 174

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           +K G+  +++ +  MK   S   +++ +  +  Q +VDS++  FV++V+E R +   +  
Sbjct: 175 EKYGIKEQNITTGKMKDAGSQGRDMSKEEKEYFQGLVDSAFDRFVKIVAEGRGLSEREVR 234

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY--WFCDL 263
            L+DGR++ G++A   GL+D +G  +     + +    +    I++ N   ++   F  +
Sbjct: 235 KLADGRVYDGSQALANGLVDKIGDLDSAIGDMASENNLEDPMVIRNENIMGSFSSIFSKV 294

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWAVW 291
            +L  S      +  + +        ++
Sbjct: 295 TDLKKSESDLAILDKLMKNGGPRPMYLY 322


>gi|332161920|ref|YP_004298497.1| protease 4 [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|325666150|gb|ADZ42794.1| protease 4 [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
          Length = 617

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/273 (24%), Positives = 123/273 (45%), Gaps = 18/273 (6%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
           +        +A +   G I D            L  +I +   D    A+I+ ++SPGGS
Sbjct: 317 TPTPQQGEQIAVLFANGAIMDGPQTPGNVGGDALAAQIRQARLDPKIKAVILRVNSPGGS 376

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +  ++   KP++  +  MAAS GY IS  +N I+A  ++L GSIG+    
Sbjct: 377 VSASELIRTELAALRAANKPLVVSMGGMAASGGYWISTPANYIIANPSTLTGSIGIFGVI 436

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  L+ +GV    V +SP+        ++ P+  QMMQ  +++ Y  F+ LV+ +R+
Sbjct: 437 NTFQNTLESIGVHTDGVATSPLANVSVT-KDLPPEFSQMMQINIENGYKTFIDLVASARH 495

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256
              ++   ++ G +W G +AK  GL+D +G  ++  + +  L   +   +    D     
Sbjct: 496 KTPEQVDQIAQGHVWIGIDAKNNGLVDQLGDFDDAVKKVAELAKLKTWQLNWFVD----- 550

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                DL    +S+ ++  +P   Q  +    +
Sbjct: 551 EPSLSDLIFGQMSASVQAMLPTAIQAWLPAPIS 583



 Score = 83.1 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 44/293 (15%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIE 55
           +Y  + S   +       + + G + D                             +++E
Sbjct: 41  IYLQFQSKPAEQVKGALLVNLSGVVVDQPAVNNKLRQWGRELLGASSNRLQENSLFDIVE 100

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114
            I     D++ T +++SL    G+     + I +A+++ ++    I  + E  +   Y +
Sbjct: 101 TIRLAKADNNITGMVLSLGDFTGADQPSLQYIGKALREFRDSGKPIYAIGESYSQTQYYL 160

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172
           +  +N I  +    V   G      Y K  L+KL V+    +    K+   P    +++P
Sbjct: 161 ASFANKIYLSPHGTVALHGFASNNLYYKSLLEKLKVTTNIFRVGTYKSAVEPMIRDDMSP 220

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLI 224
            A +     +   +  ++  V+ +R +  ++           L          A    L+
Sbjct: 221 AAREADTRWIGGLWQNYLTAVAANRQLTPEQLFPGGAGVVSGLQAAGGSQAQYALSSKLV 280

Query: 225 DVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           D +  + E+   L           D +   I D+ P       +   +  ++ 
Sbjct: 281 DQLATRPEMENELVKAFGWDKKNNDFNYVSIYDYQPTPTPQQGEQIAVLFANG 333


>gi|187924894|ref|YP_001896536.1| peptidase S49 [Burkholderia phytofirmans PsJN]
 gi|187716088|gb|ACD17312.1| peptidase S49 [Burkholderia phytofirmans PsJN]
          Length = 334

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 115/275 (41%), Gaps = 14/275 (5%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSL 73
            +          V     H A + + G+I      +++++   ++    D     +I+  
Sbjct: 64  AIWAAIDFSGDKVAATGRHTAMVTLDGEISADTNANAEDVNTALQSAFDDAGTAGVILRC 123

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCASNIIVAAETSLVG 130
           +SPGGS      I+  I++++ + P I     V +M AS GY  + A++ I   + S+VG
Sbjct: 124 NSPGGSPVQAGIIYNEIRRLRAKYPSIPLYVVVGDMCASGGYYAAAAADKIYVDKASIVG 183

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGVL         +DKLG+  +   S   K    PFS   PK  +  QD++D  +  F+
Sbjct: 184 SIGVLMDSFGFTGLMDKLGIQRRLHTSGENKGFFDPFSPETPKMDEHAQDMLDQIHAQFI 243

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
             V + R     +T  +  G  WTG ++ ++GL D +G  + V + L+          I 
Sbjct: 244 DAVRQGRGKRLHETPDMFSGLFWTGQKSVELGLADGLGDADYVARDLFK------APDIV 297

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           D+   ++      +    +        +    K+ 
Sbjct: 298 DYTVKESITDRVARKFGAAVGSGAVHAMALGGKMN 332


>gi|299532484|ref|ZP_07045874.1| peptidase S49 [Comamonas testosteroni S44]
 gi|298719431|gb|EFI60398.1| peptidase S49 [Comamonas testosteroni S44]
          Length = 348

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/268 (22%), Positives = 118/268 (44%), Gaps = 7/268 (2%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISRDDSATALIVSLS 74
           +  V+F  ++     SPH A + I+G+I    +     ++  +     D  + A+++ ++
Sbjct: 81  MWAVFFKDTATKTSTSPHTAVVEIKGEIASGADASAEFVVAAMRSAFEDSGSRAVVLLIN 140

Query: 75  SPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           SPGGS      I   + ++K +  KP+   V E  ASA Y I+ A++ I   + S+VGSI
Sbjct: 141 SPGGSPVQAGIINDEMTRLKAKYNKPLYAVVEESCASAAYYIAAAADEIFVDKASIVGSI 200

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GVL         +DK+GV  + + +   K    PFS ++ +  +    +++  +  F+ +
Sbjct: 201 GVLMDGFGFTGVMDKVGVERRLLTAGENKGFLDPFSPMSAQQKEFALQMLEQIHQQFIGV 260

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           V   R     +T  +  G  WTG +A ++GL D +G  + V + +          +  + 
Sbjct: 261 VKAGRGDRLHETPEMFSGLFWTGQQAVELGLADKLGSLDYVAREVVKAEEVIDYTRRDNV 320

Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMK 280
                  F           +   +P ++
Sbjct: 321 AERLAKRFGAAIGEGSVKAMRGLVPSIR 348


>gi|149188174|ref|ZP_01866469.1| protease IV [Vibrio shilonii AK1]
 gi|148838162|gb|EDL55104.1| protease IV [Vibrio shilonii AK1]
          Length = 617

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/282 (24%), Positives = 130/282 (46%), Gaps = 13/282 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSL 73
           +        +     VA I   G I D ++             +++   +DS  ++++ +
Sbjct: 313 LASMPYDLPKQPDNQVAVIVASGTIMDGEQPRGTVGGDTTAALLKQARENDSVKSVVLRV 372

Query: 74  SSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
            SPGGSA+A E I   +Q ++   KPV+  +  +AAS GY IS  +N I+A  T++ GSI
Sbjct: 373 DSPGGSAFASEVIRNEVQALRDAGKPVVVSMSSVAASGGYWISMNANKIMAQPTTITGSI 432

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           G+       +  L+ +G++   V +SP  +     + ++  A +  Q  +++ Y  F+ L
Sbjct: 433 GIFSVVTTFEKGLNNIGINTDGVGTSPF-SGVGVTTGISEGASKAFQMGIENGYKRFITL 491

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIK 250
           V+ +RN+       ++ GR+WTG +A + GL+D +G  ++       LG  +   I  ++
Sbjct: 492 VANNRNMSVTDVDSVAQGRVWTGKDALERGLVDQIGDFDDAVALAAELGGMEKYDIYWVE 551

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           +   P   +  D+      SL  D    + Q+ +     +  
Sbjct: 552 EPLSPAQQFVQDIMQQVKVSLGLDISAWVPQSLLPVATQLQQ 593



 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 90/283 (31%), Gaps = 37/283 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSS-HVEDNSPHVARIAIRGQIEDSQ-------- 51
           + F    I        +  +   +                 + I G I +          
Sbjct: 19  INFTRLAIINLLFFAVIAMIYFAFTQVEPAPATVKKESALVLNISGPIVEQSSYVNPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93
                            ++++ I   S DDS   L++SL   P  S      I +A+ + 
Sbjct: 79  VTGSLFGRDLPKENVLFDIVDSIRHASTDDSVKGLVLSLRDMPETSLTKLRYIAKALNEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     I         + Y ++  ++ +  A    V   G      Y K  L+KL V+  
Sbjct: 139 KATGKPIYAYGAFYNQSQYYLASYADKVYLAPDGAVLIKGYSAYSMYYKTLLEKLDVTTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203
             +    K+   PF   +++  A +     V   +  +V  V+ +R I          + 
Sbjct: 199 VFRVGTYKSAVEPFLRDDMSDAAKESATRWVSQLWGAYVDDVASNRQIETSVLTPTMDEF 258

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
              L        A +K++GL+D +  +++V Q++         
Sbjct: 259 LKELEAADGDLAALSKQLGLVDELVTKQQVNQAMVEAFGSDGD 301


>gi|318605561|emb|CBY27059.1| protease IV [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 617

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/273 (24%), Positives = 123/273 (45%), Gaps = 18/273 (6%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
           +        +A +   G I D            L  +I +   D    A+I+ ++SPGGS
Sbjct: 317 TPTPQQGEQIAVLFANGAIMDGPQTPGNVGGDALAAQIRQARLDPKIKAVILRVNSPGGS 376

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +  ++   KP++  +  MAAS GY IS  +N I+A  ++L GSIG+    
Sbjct: 377 VSASELIRTELAALRAANKPLVVSMGGMAASGGYWISTPANYIIANPSTLTGSIGIFGVI 436

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  L+ +GV    V +SP+        ++ P+  QMMQ  +++ Y  F+ LV+ +R+
Sbjct: 437 NTFQNTLESIGVHTDGVATSPLANVSVT-KDLPPEFSQMMQINIENGYKTFIDLVASARH 495

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256
              ++   ++ G +W G +AK  GL+D +G  ++  + +  L   +   +    D     
Sbjct: 496 KTPEQVDQIAQGHVWIGIDAKNNGLVDQLGDFDDAVKKVAELAKLKTWQLNWFVD----- 550

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                DL    +S+ ++  +P   Q  +    +
Sbjct: 551 EPSLSDLIFGQMSASVQAMLPTAIQAWLPAPIS 583



 Score = 82.7 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 44/293 (15%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIE 55
           +Y  + S   +       + + G + D                             +++E
Sbjct: 41  IYLQFQSKPAEQVKGALLVNLSGVVVDQPAVNNKLRQWGRELLGASSNRLQENSLFDIVE 100

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114
            I     D++ T +++SL    G+     + I +A+++ ++    I  + E  +   Y +
Sbjct: 101 TIRLAKADNNITGMVLSLGDFTGADQPSLQYIGKALREFRDSGKPIYAIGESYSQTQYYL 160

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172
           +  +N I  +    V   G      Y K  L+KL V+    +    K+   P    +++P
Sbjct: 161 ASFANKIYLSPHGTVALHGFASNNLYYKSLLEKLKVTTNIFRVGTYKSAVEPMIRDDMSP 220

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLI 224
            A +     +   +  ++  V+ +R +  ++           L          A    L+
Sbjct: 221 AAREADTRWIGGLWQNYLTAVAANRQLTPEQLFPGAAGVVSGLQAAGGSQAQYALSSKLV 280

Query: 225 DVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           D +  + E+   L           D +   I D+ P       +   +  ++ 
Sbjct: 281 DQLATRPEMENELVKAFGWDKKNNDFNYVSIYDYQPTPTPQQGEQIAVLFANG 333


>gi|146311337|ref|YP_001176411.1| protease 4 [Enterobacter sp. 638]
 gi|145318213|gb|ABP60360.1| signal peptide peptidase SppA, 67K type [Enterobacter sp. 638]
          Length = 618

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 122/272 (44%), Gaps = 14/272 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGG 78
           +    +    VA +   G I D +E            +I     D    A+++ ++SPGG
Sbjct: 318 TKKPSETGDSVAVVFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGG 377

Query: 79  SAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           S  A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+   
Sbjct: 378 SVSASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGV 437

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
              V+  LD LGV    V +SP+       S + P+  QMMQ  +++ Y  F+ LV+ESR
Sbjct: 438 INTVENSLDYLGVHTDGVATSPLADVSVTKS-LPPEVSQMMQLTIENGYKRFITLVAESR 496

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
               ++   ++ G +WTG +AK  GL+D +G  ++       L        I  +     
Sbjct: 497 KSTPEQIDKIAQGHVWTGQDAKNNGLVDSLGDFDDAVAKAAELAKL-KQWHIAYYQDEPT 555

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +    +  +S+S  +   +P   Q  +    A
Sbjct: 556 FIDMVMNGMSVS--VRAMLPAAIQAYLPAPVA 585



 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 106/288 (36%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVY--FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + F+ + +   + +  ++    V+   S S+  +++      + I G I D         
Sbjct: 19  LNFIRELVMNVFFIFLILVCVGVWMHISSSNQAQNSGRGALLLDITGVIVDKPSASNRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++E I +   D + T +++ L +  G+     + I +A+
Sbjct: 79  VIGRQLFGATSDRLQENSLFDIVEAIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V +  +   Y ++  +N I  +    V   G      Y K  L+KL V
Sbjct: 139 REFRDSGKPVIAVGDSYSQGQYYLASFANKIWLSPQGTVDLHGFATNGLYYKSLLEKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           +    +    K+   PF  ++++P A +     +   ++ ++  V+ +R +  ++     
Sbjct: 199 TTHVFRVGTYKSAVEPFIRNDMSPAAREADSRWIGELWNNYLTTVAANRQVTPEQIFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L      T   A    L+D +G   ++ ++L          K
Sbjct: 259 QAMLDGLQKVDGDTAKYALDNKLVDTLGSSADIEKALTKQFGWSKEEK 306


>gi|186684393|ref|YP_001867589.1| signal peptide peptidase SppA, 36K type [Nostoc punctiforme PCC
           73102]
 gi|186466845|gb|ACC82646.1| signal peptide peptidase SppA, 36K type [Nostoc punctiforme PCC
           73102]
          Length = 273

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/260 (23%), Positives = 131/260 (50%), Gaps = 5/260 (1%)

Query: 36  PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
             +ARI I G I  +  + ++E ++ +       AL++ + SPGG+    + I+ A++++
Sbjct: 11  KQIARIEITGAIAGATRKRVLEALKTVEE-KKFPALLLRIDSPGGTVGDSQEIYSALKRL 69

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           + +  ++     ++AS G  I   +  IV+   ++ GSIGV+ +   ++  L+K+GVS +
Sbjct: 70  REKIKIVASFGNISASGGVYIGMGAEHIVSNPGTITGSIGVILRGNNLERLLEKIGVSFQ 129

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
            +KS P K   S   ++      ++Q+++D+SY  FV+ V++ R++  +     +DGRI+
Sbjct: 130 VIKSGPYKDILSFDRQLTQPEENILQELIDTSYQQFVQTVADGRSLTVEAVKSFADGRIF 189

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS--ISSL 271
           TG +A ++G++D +G +E+  +    L      + +      +      L   S  +SS 
Sbjct: 190 TGQQALELGVVDRLGTEEDARRWTAELVGLDPEKTLCYTLEERKPLLSRLLPGSRQVSSG 249

Query: 272 LEDTIPLMKQTKVQGLWAVW 291
           +   I  ++         +W
Sbjct: 250 IRSGIDWLEFEMSTSGLPLW 269


>gi|319651852|ref|ZP_08005977.1| signal peptide peptidase [Bacillus sp. 2_A_57_CT2]
 gi|317396504|gb|EFV77217.1| signal peptide peptidase [Bacillus sp. 2_A_57_CT2]
          Length = 336

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/322 (21%), Positives = 142/322 (44%), Gaps = 36/322 (11%)

Query: 3   FVLKKIKTRYVML-----------SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ 51
           FV   +                          +        +    +A + + G I+D+ 
Sbjct: 16  FVFSVVLNFVTAFAFTDFESSVNELFAGSNEAFLEEVIEEGNAQKKIAVLDVNGVIQDTG 75

Query: 52  E--------------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-- 95
           +               ++ +E +  D +  A+++ ++SPGG       I   I +++   
Sbjct: 76  DAASLFASPGYNHKGFMDNLEYVKEDGTVKAIVIKVNSPGGGVVESAEIHDKIIEIQKET 135

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
           +KPV   +  MAAS GY IS  ++ I A+  ++ GS+GV+ Q        +K GV   ++
Sbjct: 136 KKPVYISMGSMAASGGYYISAPADKIFASPETMTGSLGVIMQGYNYAGLAEKYGVEFVTI 195

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215
           KS P K   SP  ++  +  +++Q ++D+SY  FV+++SE R +   +   ++DGRI+ G
Sbjct: 196 KSGPYKDIMSPTRDMTDEERKILQSMIDNSYAGFVKVISEGRGLTEAQVKEIADGRIYDG 255

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
            +AK++ LID  G  ++V + L          ++ ++   +N+ F  + ++    ++ D 
Sbjct: 256 RQAKELNLIDGFGYADDVIEQLKKDHKLDGA-QVVEYT--ENFGFGSMFSMGARKIMGDD 312

Query: 276 I------PLMKQTKVQGLWAVW 291
           +       L+ Q     L  ++
Sbjct: 313 LEMAGMMKLLSQPNSPRLMYLY 334


>gi|317048414|ref|YP_004116062.1| signal peptide peptidase SppA, 67K type [Pantoea sp. At-9b]
 gi|316950031|gb|ADU69506.1| signal peptide peptidase SppA, 67K type [Pantoea sp. At-9b]
          Length = 618

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/275 (26%), Positives = 118/275 (42%), Gaps = 22/275 (8%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQELI---------ERIERISRDDSATALIVSLSSPGGS 79
                   ++A +   G I D +E            +I     D    A+I+ ++SPGGS
Sbjct: 319 KQPTQQDGNIAVVMASGAIMDGEETAGNVGGDTTAAQIRDARLDPKIKAIILRVNSPGGS 378

Query: 80  AYAGEAIFRAIQK-VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A EAI   +       KPV+  +  MAAS GY IS  ++ IVA  ++L GSIG+    
Sbjct: 379 VTASEAIREELAAAHAAGKPVVVSMGGMAASGGYWISTPADYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  L  +GV    V +SP+    +  +        +MQ  +++ Y  FV LV+ SR+
Sbjct: 439 NTVENSLSTIGVHTDGVATSPLADVATTKALPTEVQQ-LMQLTIENGYRNFVGLVAASRH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG++AK  GL+D +G  ++       L              P+  
Sbjct: 498 KTPEQINEIAQGHVWTGSDAKANGLVDALGDFDDAVSKAAELAKI---------TTPQLS 548

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
           W+ D   +    LL + +       +     VW P
Sbjct: 549 WYQDDPGML--DLLLNQMSASASAIMPEALKVWLP 581



 Score = 90.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 109/317 (34%), Gaps = 46/317 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + F+ + I   ++++ ++    ++   S S   E       ++ + G + D         
Sbjct: 19  LNFIREFILNLFLIVLILAGVGIWLQVSGSGSTEPVQQGALKVDLTGVLVDKPSVSNRLS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               ++++ I +   D + T +++ L    G      + + +A+
Sbjct: 79  RIGRQLLGTSSDRLQENSLFDVVDAIRQAKGDKNITGIVLDLRDFAGGDQPSLQYVGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  + +  + A Y ++  +N +  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVYAIGDSYSQAQYYLASYANKVYLSPQGTVDLHGFATNGLYYKTLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           +    +    K+   PF   +++P+A       +   +  ++  VS +R I   +    +
Sbjct: 199 NSHVFRVGTYKSAVEPFLRDDMSPEARDADSRWIGQLWQNYLNTVSANRQITPQQLFPGA 258

Query: 209 DGRI--------WTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNP 254
            G I         T   A    L+D +  +    Q L           D     I D+  
Sbjct: 259 AGIISGLQAVQGDTAKYALNSKLVDALESRATADQELIKTFGWDKQNNDYRNVSIYDYTV 318

Query: 255 PKNYWFCDLKNLSISSL 271
            +         + ++S 
Sbjct: 319 KQPTQQDGNIAVVMASG 335


>gi|37526445|ref|NP_929789.1| protease 4 [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36785876|emb|CAE14927.1| protease IV (endopeptidase IV) (signal peptide peptidase)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 621

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 124/289 (42%), Gaps = 22/289 (7%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDS 65
            + +++             +  ++A I  +G I D               +I +   DD+
Sbjct: 308 FNAISIYDYAPQLVEGRLSSKGNIAVIVAQGAIVDGQQTQGMVGGDTTAAQIRQARLDDN 367

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAA 124
             A+I+ ++SPGGS  A + I   +  ++   KPV+  +  MAAS GY I+  +N I+A 
Sbjct: 368 IKAVILRVNSPGGSVSASDVIRTELAALRATNKPVVVSMGGMAASGGYWIATPANYIIAN 427

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
           +++L GSIG+       +  L+ +G+    V ++P+         ++ +   +MQ  +++
Sbjct: 428 QSTLTGSIGIFGVITTYENSLEHIGIHTDGVSTTPLAGISVT-KGLSKEFSALMQLNIEN 486

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            Y+ F+ LV+ SR+   ++   ++ G +W G +AK  GL+D +G  ++       L    
Sbjct: 487 GYNNFIGLVATSRHKTREEVDNIAQGHVWIGHDAKTNGLVDQLGDFDDAVTKAAELAKLD 546

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
           +                    +S S LL   +    Q  V      W P
Sbjct: 547 NPE-----------LDWMQPEMSFSELLMSQLTTTAQAIVPEAVQAWLP 584



 Score = 90.1 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 110/332 (33%), Gaps = 44/332 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH--VARIAIRGQIEDSQ------- 51
           + F+ + I     ++ ++ +   +  +    +    +     + + G I D         
Sbjct: 19  LNFIREVISNLIFIMLILVVVGSFLLYQQTNKTADSYQGALYVNLTGVIVDQVSNRTPLT 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               ++++ I +   D+  T L++ L    G+     + I +AI
Sbjct: 79  QLGRELFGTSSNKFQENSLFDIVDSIRQAKTDNKITGLVLKLDDFIGADQPSMQYIGKAI 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
            + K     +  + +    + Y ++  ++ I  +    VG  G      Y K  LD L V
Sbjct: 139 NEYKTSGKPVYAISDSYNQSQYYLATFADKIYLSPQGTVGLYGYSTNSLYYKSLLDSLKV 198

Query: 151 SIKSVKSSPMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           +    +    K+   P    +++P A +     ++  +H ++  V+ +R +  D+     
Sbjct: 199 TAHIFRVGTYKSAVEPVMRDDMSPAAREADSRWINGLWHNYLNTVATNRKLTVDQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK----IKDWNPPK 256
                 L          A K  L+D V  +  +   +          +    I  ++   
Sbjct: 259 NEMIASLRAVGGDNAQYALKHKLVDYVAPRNVIESDMTKAFGWDEKNRHFNAISIYDYAP 318

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                 L +    +++     ++   + QG+ 
Sbjct: 319 QLVEGRLSSKGNIAVIVAQGAIVDGQQTQGMV 350


>gi|238763177|ref|ZP_04624143.1| Protease 4 [Yersinia kristensenii ATCC 33638]
 gi|238698676|gb|EEP91427.1| Protease 4 [Yersinia kristensenii ATCC 33638]
          Length = 624

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/273 (24%), Positives = 123/273 (45%), Gaps = 18/273 (6%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
           +        +A +   G I D            L  +I +   D    A+I+ ++SPGGS
Sbjct: 325 TPTPQQGEQIAVLFANGAIMDGPQTPGNVGGDALAAQIRQARLDPKIKAVILRVNSPGGS 384

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +  ++   KP++  +  MAAS GY IS  +N I+A  ++L GSIG+    
Sbjct: 385 VSASELIRTELAALRAANKPLVVSMGGMAASGGYWISTPANYIIANPSTLTGSIGIFGVI 444

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  L+ +GV    V +SP+        ++ P+  QMMQ  +++ Y  F+ LV+ +R+
Sbjct: 445 NTFQNTLESIGVHTDGVATSPLANISVT-KDLPPEFSQMMQINIENGYKTFIDLVATARH 503

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256
              ++   ++ G +W G +AK  GL+D +G  ++  + +  L   +   +    D     
Sbjct: 504 KTPEQVDQIAQGHVWIGMDAKNNGLVDQLGDFDDAVKKVAELAQLKTWQLNWFVD----- 558

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                DL    +S+ ++  +P   Q  +    +
Sbjct: 559 EPSLSDLIFGQMSASVQAMLPAAIQAWLPAPIS 591



 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 98/293 (33%), Gaps = 44/293 (15%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIE 55
           +YF + S   +       + + G + D                             +L+E
Sbjct: 49  IYFQFQSKPTEPVKGALLVNLSGVVVDQPAVNNKLRQLGRELLGASSNRLQENSLFDLVE 108

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114
            I     D++ T L++SLS   G+     + I +A+++ ++    I  + +      Y +
Sbjct: 109 TIRLAKADNNITGLVLSLSDFTGADQPSLQYIGKALREFRDTGKPIYAIGDSYNQTQYYL 168

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172
           +  +N I  +    V   G      Y K  L+KL V+    +    K+   P    +++P
Sbjct: 169 ASFANKIYLSPQGAVDLHGFASNNLYYKSLLEKLKVTTNIFRVGTYKSAVEPMIRDDMSP 228

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLI 224
            A +     +   +  ++  VS +R +  ++           L          A    L+
Sbjct: 229 AAREADSRWIGGLWQNYLTTVSANRQLTPEQLFPGAAGVISGLQAAGGSPAQYALASKLV 288

Query: 225 DVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           D +  + +V   L           D +   I D+ P       +   +  ++ 
Sbjct: 289 DQLATRPDVENELVKAFGWDKKSNDFNYVSIYDYQPTPTPQQGEQIAVLFANG 341


>gi|34557816|ref|NP_907631.1| protease IV (PspA) [Wolinella succinogenes DSM 1740]
 gi|34483534|emb|CAE10531.1| PROTEASE IV (PSPA) [Wolinella succinogenes]
          Length = 290

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 133/278 (47%), Gaps = 6/278 (2%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           +EFV +  K    +L LV +  ++ +       N  ++A I+++G I +    +E +ERI
Sbjct: 16  LEFVTRYFKA---LLFLVIVVWIFGANEGSSAINETNLAEISLKGAILNPDSFLEELERI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
                   +++ + SPGG+      I   I+++  + PV+     + AS GY     S  
Sbjct: 73  ESLPRLAGVLLVVDSPGGAIAPSVEISEEIKRLSAKVPVVVYAQGVMASGGYYAGIWSKR 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           I+A + SL+GSIGV+F    V     K+G+  +++K+   K   +     N      ++ 
Sbjct: 133 IIANKGSLIGSIGVIFNGADVSELASKIGIKTQTIKAGKYKEAGTFMRPWNEDEEGEIKR 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V   Y  FV  V+E+R +  + + + ++GR+++  EA ++GLID +G + +  ++L  L
Sbjct: 193 LVRKQYEMFVLDVAEARGLDQEVSPLYAEGRVFSATEALELGLIDQIGIKSDAKRALEEL 252

Query: 241 GVDQSIRKIKD--WNPPKNYWFCDLKNLSISSLLEDTI 276
              +    ++   W      W      L +S+LL   I
Sbjct: 253 SGVKEPLWLQKEPWEKYMERWMSQAT-LQLSTLLASGI 289


>gi|262404348|ref|ZP_06080903.1| protease IV [Vibrio sp. RC586]
 gi|262349380|gb|EEY98518.1| protease IV [Vibrio sp. RC586]
          Length = 616

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 128/287 (44%), Gaps = 14/287 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           V+      S   +   ++  +A +   G I D            L   +     D +  A
Sbjct: 307 VSYYEYKASIQPNPLTDASDIAVVVASGAIMDGSQPRGTVGGDTLAGLLREARNDSNVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   I+ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +  L+ LG+    V ++P  +     + +   A   +Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGVTTGLTQGAKDAIQLGIEHGYQ 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F+ LV+E R++       ++ GR+WT  +A+ +GL+D +G  ++       L      +
Sbjct: 486 RFISLVAEKRSMTVKAVDEIAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           +  +++   P   +  DL      SL  D +  +    +Q L   W 
Sbjct: 546 LYWVEEPLTPAQQFLQDLLGEVRISLGLD-VSALLPKSLQPLATEWQ 591



 Score = 96.2 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 117/328 (35%), Gaps = 40/328 (12%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51
           + F+   +     +LS+  +  +Y    + +       A  + + G I +          
Sbjct: 19  ITFIRLALTNLIFLLSIGIIYFIYIHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            +++E +     D++ T L+++    P  +      I +AI + 
Sbjct: 79  FTGSVFGEELPRENVLFDIVETLRYAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K+    +  V +    + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 139 KSSGKPVYAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203
             +    K+   PF   +++  A +     +   +  +V  V+ +R I          + 
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIAIKTLTPSMDEF 258

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK---IKDWNPPKNYWF 260
              L +      A +K+VGL+D +  +++V Q+L              +  +    +   
Sbjct: 259 VAQLKEAGGDLAALSKQVGLVDELATRQQVRQALAETFGSDGKDSYNAVSYYEYKASIQP 318

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288
             L + S  +++  +  +M  ++ +G  
Sbjct: 319 NPLTDASDIAVVVASGAIMDGSQPRGTV 346


>gi|317492301|ref|ZP_07950730.1| signal peptide peptidase SppA [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919640|gb|EFV40970.1| signal peptide peptidase SppA [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 443

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/279 (23%), Positives = 128/279 (45%), Gaps = 15/279 (5%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSAT 67
              +++  ++  +  +  S  +A I   G I D +             +I     +    
Sbjct: 133 FSAISMYDYTPPAAKQSGSE-IAVIFADGAIMDGEATPGNVGGDTTANQIRDARLNPKIK 191

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAET 126
           A+++ ++SPGGS  A E I   +   +   KPV+  +  +AAS GY IS  ++ IVA+ +
Sbjct: 192 AIVLRVNSPGGSVSASEVIRSELAAARAAGKPVVVSMGGLAASGGYWISTPADYIVASPS 251

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           +L GSIG+       +  LD +GV    V +SP+         +     QMMQ  +++ Y
Sbjct: 252 TLTGSIGIFGVINTFENTLDSIGVHTDGVATSPLADLTVT-KPLPEAFSQMMQINIENGY 310

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
           + F+ LV+++RN   ++   ++ GR+W G++AKK GL+D +G  ++       L      
Sbjct: 311 NNFINLVAKARNKTPEQVDAIAQGRVWLGSDAKKNGLVDQLGDFDDAVSKAAELAKL-KT 369

Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
            ++  +   ++  F  +     +  ++  +P   +  + 
Sbjct: 370 YQLNWF--VEDPSFGQMLLGQFTGSVQAALPSAVRAMLP 406



 Score = 45.0 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 16/144 (11%)

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSS 185
           +V   G+     Y K  LDKL VS    +    K+   P    +++P A       +   
Sbjct: 1   MVDLHGMATNNLYYKTLLDKLKVSTHIFRVGTYKSAVEPMIRDDMSPAARDADNQWLSGM 60

Query: 186 YHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           ++ ++  V+ +R I  ++           L      T   A    L+D +  + EV    
Sbjct: 61  WNNYLTTVAANRQITTEQLFPGAEGILKGLQAVGGDTAKYALSNKLVDALASRSEVENLF 120

Query: 238 YALGV------DQSIRKIKDWNPP 255
                      D S   + D+ PP
Sbjct: 121 TKAFGWNKSTKDFSAISMYDYTPP 144


>gi|171319456|ref|ZP_02908560.1| peptidase S49 [Burkholderia ambifaria MEX-5]
 gi|171095307|gb|EDT40290.1| peptidase S49 [Burkholderia ambifaria MEX-5]
          Length = 330

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 122/286 (42%), Gaps = 17/286 (5%)

Query: 7   KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           KI  R+    +  L+   ++ FS  S       H A + I G+I      +++++   ++
Sbjct: 44  KIFFRFAFLGVFLLLAFALIDFSSDSKFTSGGHHTALVTIDGEIAAGTNANAEDINTALD 103

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLIS 115
               DD A  +++ ++SPGGS      ++  I+++      KP+   V +M AS GY I+
Sbjct: 104 AAFDDDGAAGVVLRINSPGGSPVQAGMVYDEIRRLRTKHPDKPLYVVVTDMCASGGYYIA 163

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         + KLGV  +   S   K    PFS   PK  
Sbjct: 164 SAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVDRRLHTSGENKGFYDPFSPETPKMD 223

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q ++D  +  F++ V E R     +T  +  G  WTG ++ ++GL D  G  + V +
Sbjct: 224 AHAQALLDQVHAQFIKAVKEGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDTVAR 283

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
            +           + D+   ++      +    +        L   
Sbjct: 284 DVLK------APDLVDYTVKESLTNRVARKFGAAVGGAAMKALAAG 323


>gi|159905972|ref|YP_001549634.1| signal peptide peptidase SppA, 36K type [Methanococcus maripaludis
           C6]
 gi|159887465|gb|ABX02402.1| signal peptide peptidase SppA, 36K type [Methanococcus maripaludis
           C6]
          Length = 307

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 139/270 (51%), Gaps = 15/270 (5%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------ELIERIE 58
           V L ++   V +         +S ++A I + G I                  + I+ I+
Sbjct: 11  VFLVIILFLVGFILLIPGDGISSKNIAMINLDGTISSQTSEAGLFSDFEPSVNDYIKWID 70

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118
              +D +  A+++ ++SPGG A A E + R I++  ++K VI  +  M  SA Y  + ++
Sbjct: 71  DAEKDSNIKAIVIKINSPGGEAIASEKLARKIKEASDKKVVIAYIETMGTSAAYQAASST 130

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + IVA + +LVG+IGV  Q  +    ++KLG++I ++KS   K   SP   +  +  +M 
Sbjct: 131 DYIVAEKQALVGNIGVRMQIIHYYGLMEKLGINISTIKSGEYKDMGSPTRPMTEEEQKMF 190

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           + +VD SY+ FV  V+E+RN+  ++TL ++DG+I++G +A+KVGL+D+ G + +      
Sbjct: 191 ESIVDESYYEFVSWVAENRNMTINETLEVADGKIYSGTQAQKVGLVDMTGTKADAIDIAS 250

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
            +    +  ++ +++   +     +     
Sbjct: 251 KMANITN-PEVYEYSGSSSVGIFGMTFNDA 279


>gi|283955512|ref|ZP_06373007.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283792973|gb|EFC31747.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 298

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/271 (25%), Positives = 129/271 (47%), Gaps = 2/271 (0%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64
           +K I T +    L+ + +     S++   N  ++ RI ++G+I DS  ++E+I     D 
Sbjct: 15  IKFINTYFKTFVLLLIVIWILMPSANSSSNLANLERIDLKGEIFDSSAVLEKIINTKNDS 74

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
           +   ++  + SPGG+      +  AI+ +K +KPV+       AS  YL    +N I+A 
Sbjct: 75  NIKGVLFVIDSPGGAFAPSMELALAIKDLKIKKPVLVYASGTMASGSYLAGVGANKILAN 134

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             S +GSIGV+ Q   +    +KLG+  +++++   K+  +     N      +Q ++D 
Sbjct: 135 PASFIGSIGVIMQGADLSGLANKLGIKEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQ 194

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           SY  F   V++ R +  +K    ++ R++  A+AK++GLID +   E   + L  L    
Sbjct: 195 SYDLFTGFVAKERALDLNKKDQWANARVFLAAKAKELGLIDELSNYENAKKELEKLANVS 254

Query: 245 SIRKIKD--WNPPKNYWFCDLKNLSISSLLE 273
           +    ++   +   N       NL   SL+E
Sbjct: 255 NPVWKEENKIDKFLNRLEGQASNLISKSLIE 285


>gi|227326088|ref|ZP_03830112.1| protease 4 [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 616

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 126/285 (44%), Gaps = 17/285 (5%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDS 65
            + +++             N+  +A +   G I D               +I     D  
Sbjct: 306 FNFISIYDYAI---KPPVQNNNQIAVVFANGAIIDGPETPGMVGGDTTAAQIRAARLDPK 362

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAA 124
             AL++ ++SPGGS  A E I   +  ++   KP++  +  MAAS GY IS  +N I+++
Sbjct: 363 VKALVLRVNSPGGSVTASELIRSELMALRLAGKPIVVSMGGMAASGGYWISTPANTIISS 422

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
            ++L GSIG+       +  L+ LGV    V +SP+       S + P+  QMMQ  ++ 
Sbjct: 423 ASTLTGSIGIFGVITTFEDSLESLGVHTDGVATSPLADLSITKS-LPPEFSQMMQLSIER 481

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            Y  F+ +V+++R    ++   ++ G +W G++AK+ GL+D +G  ++  +    L    
Sbjct: 482 GYKNFIDIVAQARKKTPEQIDQIAQGHVWVGSDAKENGLVDQIGDFDDAVKKAAELAKL- 540

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
              ++  +          L  ++ S      +P+  Q+ +    A
Sbjct: 541 GQYQLNWYAEQPGLLDTMLNQVNASVY--ALLPVAVQSMLPAPVA 583



 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 100/280 (35%), Gaps = 38/280 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + F+ + I   +++  ++    +Y    +  E  +     + + G + D           
Sbjct: 19  LNFIREFILNIFLIALILVGVGIYSQVKTTPEAATKGALLVDLTGVVVDQPTVNNKLRQL 78

Query: 52  ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92
                             ++++ I +   DD+ T +++ LS   G+     + I +A+++
Sbjct: 79  GREFFGASNNRRQENSLFDIVDSIRQAKSDDNITGMVLDLSDFTGADQPSLQYIGKALRE 138

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            ++    I  V +    + Y ++  +N +       V   G      Y K  LDKL V+ 
Sbjct: 139 FRDSGKPIYAVGDSYNQSQYYLASFANTVSLTPQGSVDLHGFATNNLYFKSMLDKLKVTT 198

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203
              +    K+   P+   +++P A       +++ +  ++  VS +R I   +       
Sbjct: 199 NIFRVGTYKSAVEPYLRDDMSPAARDADGRWINALWQQYLNTVSANRQITPQQLFPGATS 258

Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
               L   +  T   A    L+D V  +    QSL     
Sbjct: 259 IIAGLQAVQGDTARYALDNKLVDEVASRSVTEQSLVKAFG 298


>gi|325106984|ref|YP_004268052.1| signal peptide peptidase SppA, 36K type [Planctomyces brasiliensis
           DSM 5305]
 gi|324967252|gb|ADY58030.1| signal peptide peptidase SppA, 36K type [Planctomyces brasiliensis
           DSM 5305]
          Length = 631

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/261 (23%), Positives = 115/261 (44%), Gaps = 16/261 (6%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIE--------------DSQELIERIERISRDD 64
            + ++        +   P VA I   G I                ++ +++ I + + +D
Sbjct: 321 LMNLMMGVEPGTKKSRKPQVAVIYATGAIMPGRGTSGPFGEDVIGAESMVDTIRKANEND 380

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
              A+++ ++SPGGSA A + I++A+++V   KP +  + ++A S GY IS  ++ I   
Sbjct: 381 RVKAIVLRVNSPGGSALASDLIWKALEEV--DKPFVVSMGDVAGSGGYYISMGADYIFVE 438

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             ++ GSIGV+      +   +KLG++   V         S     +    + MQ +++ 
Sbjct: 439 PGTITGSIGVVGGKLAFEGLFNKLGITTSVVSRGKNSGALSATVPFSESERKAMQKMMNE 498

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            Y  F R  +E R++   +   L+ GRI++G  A ++GL+D VG  E+       L   +
Sbjct: 499 VYEIFTRKAAEGRDMELARLKELAGGRIYSGERAVEIGLVDEVGTLEKAIAKAAELADLE 558

Query: 245 SIRKIKDWNPPKNYWFCDLKN 265
                K   P     F  L  
Sbjct: 559 VNDVEKLLLPKPTSPFEQLFG 579



 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 101/215 (46%), Gaps = 3/215 (1%)

Query: 45  GQIEDS-QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103
           G++ +S  ++ ER+E+ + DD    +++ + +P         I  AI KV+     +   
Sbjct: 93  GEVTESLNKIEERLEKATNDDGIQGVVLKIDNPIVKLGTIHEIRHAIAKVRKAGKKVHAQ 152

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
            E A  +  LI+ A + I   E+ ++   G+  +  + K  LDKL +    ++    K+ 
Sbjct: 153 LETAMLSDLLIASACDEITMPESGMLLITGLRAEVGFYKNLLDKLEIEADILRVGKFKSA 212

Query: 164 PSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221
             P+  +E++P+  Q +++++D  Y + V+ ++ESR +   +     D    +   A KV
Sbjct: 213 AEPYTRTEMSPEFRQELEELLDDQYGYIVKTLAESRGLTEQQVTDAIDSGPHSAETAVKV 272

Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           GLID V    ++ Q++     +     ++ +   K
Sbjct: 273 GLIDAVRYPTDLEQAVLEGKDNAEFELVQKYGKKK 307


>gi|307822687|ref|ZP_07652918.1| signal peptide peptidase SppA, 36K type [Methylobacter
           tundripaludum SV96]
 gi|307736291|gb|EFO07137.1| signal peptide peptidase SppA, 36K type [Methylobacter
           tundripaludum SV96]
          Length = 321

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 113/284 (39%), Gaps = 14/284 (4%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSW------SSHVEDNSPHVARIAIRGQIE-----DSQELI 54
           ++    +  L  V L  V+              D+  H A I + G I      ++  +I
Sbjct: 35  RRWGVFFKSLMFVYLIAVFGVAMYPKLKQDIGVDSKDHTAVIDVVGMIAEGKEANADSII 94

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV---ITEVHEMAASAG 111
           E +    +D     +I+  +SPGGS      ++  I+K+K   P       V ++ AS  
Sbjct: 95  ESLRNAVKDKHTKGIILHANSPGGSPVQSSYVYEEIRKIKKEHPELPIYAVVSDICASGC 154

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I  AS+ I    +SLVGSIGVL         + KLGV  +   +   KA   PFS   
Sbjct: 155 YFIVSASDKIFVNPSSLVGSIGVLMDGFGFVDGMQKLGVERRLFTAGAHKAMLDPFSPSK 214

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
               Q +Q +++  +  F+  V   R     +   +  G +WTG E  K+G++D VG Q+
Sbjct: 215 EDETQYIQSLLNQVHQQFIGAVKAGRGDRLKENPDMFSGLVWTGEEGVKLGIVDGVGNQD 274

Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
            V + L          + +                 I SL++  
Sbjct: 275 YVAKELIGAETQVDFSRQEHLLDKIAGKLGASFGQVIGSLVQGA 318


>gi|261821537|ref|YP_003259643.1| protease 4 [Pectobacterium wasabiae WPP163]
 gi|261605550|gb|ACX88036.1| signal peptide peptidase SppA, 67K type [Pectobacterium wasabiae
           WPP163]
          Length = 616

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 127/285 (44%), Gaps = 17/285 (5%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDS 65
            + +++             N+  +A +   G I D               +I     D  
Sbjct: 306 FNFISIYDYVV---KPPVQNNNQIAVVFANGAIIDGPETPGMVGGDTTAAQIRAARLDPK 362

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAA 124
             AL++ ++SPGGS  A E I   +  ++   KP++  +  MAAS GY IS  +N I+++
Sbjct: 363 VKALVLRVNSPGGSVTASELIRSELMALRLAGKPIVVSMGGMAASGGYWISTPANAIISS 422

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
            ++L GSIG+       +  L+ LGV    V +SP+       S + P+  QMMQ  ++ 
Sbjct: 423 ASTLTGSIGIFGVITTFEDSLESLGVHTDGVATSPLADLSITKS-LPPEFSQMMQLSIER 481

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            Y  F+ +V+++R    ++   ++ G +W G++AK+ GL+D +G  ++  +    L    
Sbjct: 482 GYKNFIDIVAQARKKTPEQIDQIAQGHVWVGSDAKENGLVDQIGDFDDAVKKAAELAKL- 540

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
              ++  +    N     L  ++ S      +P+  Q+ +    A
Sbjct: 541 GQYQLNWYAEQPNLLDTMLNQVNASVY--ALLPVAVQSMLPAPVA 583



 Score = 94.3 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 102/280 (36%), Gaps = 38/280 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + F+ + I   +++  ++    +Y    +  E+ +     + + G + D           
Sbjct: 19  LNFIREFILNIFLIALILVGVGIYSQVKTTPEEATKGALLVDLTGVVVDQPSVNNKLRQL 78

Query: 52  ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92
                             ++++ I +   DD+ T +++ LS   G+     + I +A+++
Sbjct: 79  GREFFGASNNRRQENSLFDIVDSIRQAKSDDNITGIVLDLSDFTGADQPSMQYIGKALRE 138

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            ++    I  V +    + Y ++  +N +       V   G      Y K  LDKL V+ 
Sbjct: 139 FRDSGKPIYAVGDSYNQSQYYLASFANTVSLTPQGSVDLHGFATNNLYFKSMLDKLKVTT 198

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203
              +    K+   P+   +++P A       +++ +  ++  VS +R I   +       
Sbjct: 199 NIFRVGTYKSAVEPYLRDDMSPAARDADGRWINALWQQYLNTVSANRQITPQQLFPGATN 258

Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
               L   +  T   A    L+D V  +    QSL  +  
Sbjct: 259 ILAGLQAVQGDTARYALDNKLVDEVASRSVTEQSLVKVFG 298


>gi|313675194|ref|YP_004053190.1| signal peptide peptidase sppa, 67k type [Marivirga tractuosa DSM
           4126]
 gi|312941892|gb|ADR21082.1| signal peptide peptidase SppA, 67K type [Marivirga tractuosa DSM
           4126]
          Length = 597

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 122/248 (49%), Gaps = 10/248 (4%)

Query: 34  NSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           NS  +A I   G I           S    + I +   DD   A+++ ++SPGGSA A +
Sbjct: 311 NSNRIAVIVAEGNIVSGKGGDGAIGSDVFAKEIRKARLDDKIKAIVLRINSPGGSALASD 370

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            ++R ++  K  KPVI  +  +AAS GY ++ A + IVA   ++ GSIG+    P +  F
Sbjct: 371 VMWREVKLAKKVKPVIASMSSVAASGGYYMAMACDTIVAQPNTITGSIGIFAIIPDLSKF 430

Query: 145 LD-KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           +D KLG++   V +       +    +N    +++Q+ V+  Y  F    +E RN+  D+
Sbjct: 431 MDTKLGITFDRVSTGEYSDLYTVTRSLNEAEKRIIQNSVERGYEDFTSKAAEGRNMQIDE 490

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
            L ++ GR+W+G EAK  GL+DV+GG ++           +    +K + P K  +   L
Sbjct: 491 LLAVASGRVWSGIEAKDNGLVDVLGGFDDAVNIAANSAGLEEGDYMKVYYPEKKPFIQQL 550

Query: 264 KNLSISSL 271
            N   SS 
Sbjct: 551 LNEMGSSA 558



 Score = 95.8 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 108/320 (33%), Gaps = 32/320 (10%)

Query: 1   MEFVLKKIKTRYVMLSLVTLT-----VVYFSWSSHVEDNSPHVARIAIRGQIE------- 48
           M+   K      + L +  +          S  S V+ +      I +   I        
Sbjct: 15  MKNFFKIFFASLLALIIFFVGFFFIFAGIASQDSEVKISENSFLEIKLNRPIVEMTSEDP 74

Query: 49  ---------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
                            ++++E IE    D+    + +            E I  A+   
Sbjct: 75  FAEFSQALTNEPTPISLKDILESIEHAKTDEKIKGIYLDAPFVLAGFAQMEEIRNALINF 134

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +    E     GY ++  ++ IV     ++   G+  +  + K  L+KL V  +
Sbjct: 135 KESGKPVLAYAEAFTETGYYVASVADNIVLNPAGMLDMSGLSSEVTFFKGTLEKLKVEPQ 194

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG- 210
             +    K+   PF   +++  + + +  +++S Y  F+  +++SR I   +   +SD  
Sbjct: 195 IFRVGTFKSAVEPFIRKDMSEASKEQISVLLNSVYGVFIENIAKSRGIDAKELRAISDQL 254

Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--KDWNPPKNYWFCDLKNLSI 268
           ++ T  +A    L+  +G  +EV   +  +       KI           +  D  N + 
Sbjct: 255 KVRTTEDALNFKLVTQLGYYDEVLTKMREIAGLGEDAKIPVASVKKYSKSFVADKYNSNR 314

Query: 269 SSLLEDTIPLMKQTKVQGLW 288
            +++     ++      G  
Sbjct: 315 IAVIVAEGNIVSGKGGDGAI 334


>gi|82702195|ref|YP_411761.1| peptidase S49 [Nitrosospira multiformis ATCC 25196]
 gi|82410260|gb|ABB74369.1| Peptidase S49 [Nitrosospira multiformis ATCC 25196]
          Length = 316

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 122/268 (45%), Gaps = 8/268 (2%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIERISRDDSA 66
           ++ L ++    + +   S +  +  H A + +RG I       ++ +   +++  +D   
Sbjct: 42  FIWLFILLFFGLGWFGDSSMSISGKHTALVDLRGVISPDSISSAENITAGLQQAFKDAKT 101

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCASNIIVA 123
             +I+ ++SPGGS      I   I++++   P I     V ++ AS GY ++ A++ I  
Sbjct: 102 QGVILRINSPGGSPVQAGYINDEIRRLRAEYPEIPLYAVVEDICASGGYYVAVAADKIYV 161

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
            + S++GSIGVL         ++KLG+  + + +   KA   PFS  N +  +  + ++ 
Sbjct: 162 DKASIIGSIGVLINGFGFTKAMEKLGIERRLITAGENKAFLDPFSPNNREQEEYAKKMLG 221

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
             +  F+++V + R     +   +  G++WTG ++ ++GL D +G  E V + +      
Sbjct: 222 DIHEQFIQVVQQGRGERLKEKPEIFSGKVWTGQKSVELGLADGMGSAEYVAREIIKAEHI 281

Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSL 271
                 +         F  +   ++S L
Sbjct: 282 VDYTTREGVAERLAKRFGGVLAETLSGL 309


>gi|223041110|ref|ZP_03611365.1| signal peptide peptidase SppA, 36K type [Campylobacter rectus
           RM3267]
 gi|222877604|gb|EEF12730.1| signal peptide peptidase SppA, 36K type [Campylobacter rectus
           RM3267]
          Length = 288

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/277 (24%), Positives = 131/277 (47%), Gaps = 2/277 (0%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63
           V K I T +  +  + L  + F        N P++A+I + G I D+ + +E I+  S+D
Sbjct: 14  VFKFINTYFKTMIFLLLVFLIFFSDKEGGVNPPNLAQINLTGAIIDAHKALEEIDSASKD 73

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
           ++   +++ + SPGG+      ++ A++ ++ +KPVI       AS  Y    +++ I+A
Sbjct: 74  EAIKGVLLYIDSPGGALAPSVELYTAVKNLRAKKPVIAYAGGSMASGSYYAGVSADKILA 133

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
              + +GSIGV+ Q   +     K+GVS + VK+   K   +     +    + +Q +V+
Sbjct: 134 NPGAFIGSIGVIMQGADLSELAAKIGVSQQIVKAGEYKEAGTFLRPWSEVEKRQLQSLVN 193

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
           +SY  FV  V+ +R +   K    ++ R++   +A K+GLID V       + L  +   
Sbjct: 194 ASYAMFVSDVATARKLDVTKRDEWANARVFLARDAAKLGLIDEVSDYFSAKRELERMSGV 253

Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            +   +    P    +   +   S  SL+   +P ++
Sbjct: 254 AN--PVWKQKPAFEKFLDKVAGESAKSLVNLFMPTVR 288


>gi|289208372|ref|YP_003460438.1| peptidase S49 [Thioalkalivibrio sp. K90mix]
 gi|288944003|gb|ADC71702.1| peptidase S49 [Thioalkalivibrio sp. K90mix]
          Length = 321

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 74/284 (26%), Positives = 129/284 (45%), Gaps = 24/284 (8%)

Query: 6   KKIKTRYVMLSLVTLTVVYF----------SWSSHVEDNSPHVARIAIRGQIEDS----- 50
           ++    + +L  + L  +            +W     +   HVA + + G I  S     
Sbjct: 31  RRWGIFFKLLLFIYLFALLVLVRGGDMGLTAWFEDDREPEEHVAVVEVDGLIASSARANA 90

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMA 107
           +EL + ++R    D   A+++ ++S GGS     AI   I ++       PV   V ++ 
Sbjct: 91  EELNKTLKRAFEADGTRAVMLRINSGGGSPVQAAAIHDEILRLKDEHEDIPVYAVVTDIG 150

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           ASA Y I+ A++ I A++ S+VGSIGV      V   L+ +GV  +   S   KA   PF
Sbjct: 151 ASAAYYIAVAADEIYASQASMVGSIGVRLDSFGVVDLLENIGVERRLFTSGENKALLDPF 210

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
             ++   V  + D++D  +  FV +V + R     +   L DG IWTG  A  +GLID +
Sbjct: 211 LPLDEGHVSHIHDLMDGLHQQFVDVVRQGRGDRLAENEELFDGLIWTGQRAVDLGLIDGL 270

Query: 228 GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           G  + V + +        + K+  + P ++      ++L +S+L
Sbjct: 271 GTDQSVARDVIG------VEKMVTFKPRRSALQLLFEDLGMSAL 308


>gi|212710743|ref|ZP_03318871.1| hypothetical protein PROVALCAL_01811 [Providencia alcalifaciens DSM
           30120]
 gi|212686440|gb|EEB45968.1| hypothetical protein PROVALCAL_01811 [Providencia alcalifaciens DSM
           30120]
          Length = 617

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/267 (25%), Positives = 134/267 (50%), Gaps = 14/267 (5%)

Query: 30  HVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSA 80
              ++  ++A I ++G I D          + L  +I     +D+  A+++ ++SPGGS 
Sbjct: 322 DTSNSEGNIAVIVVQGAIMDGPQTPGIAGGETLAAQIRDARLNDNIKAIVLRVNSPGGSV 381

Query: 81  YAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
            A + I   +   +  +KPV+  +  MAAS GY IS  ++ I+A+ ++L GSIG+     
Sbjct: 382 SASDLIRNELAAARAAKKPVVVSMGGMAASGGYWISTPADYIIASPSTLTGSIGIFGVIN 441

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
             +  L+ +GV    V +SP+         ++P+   MMQ  +++ Y  F+ LV++SR+ 
Sbjct: 442 TFENSLESIGVYTDGVSTSPLAGVSVT-KGISPQFADMMQITIENGYQTFIGLVAQSRHK 500

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
             ++   ++ GR+W G +A K+GL+D +G  ++       L   +S+    DW  P+  +
Sbjct: 501 TPEEIDKIAQGRVWIGKDALKIGLVDQLGDFDDAVAKAAELAQVKSVE--LDWMQPELSF 558

Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQG 286
              L  L +++ ++  +P   Q  +  
Sbjct: 559 MDQLI-LEVTNNVQVMMPDALQAFLPP 584



 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 94/273 (34%), Gaps = 40/273 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH--VARIAIRGQIEDSQ------- 51
           + F+ + I      + L  +   Y    +  +    +     + ++G + D         
Sbjct: 19  INFIRQFIFNAIFFVLLFLVIGAYSLLQTDSKPEKNYFGALVVDLQGIVVDQVSSPDPFG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               ++++ I   + DD  T LI+ L +   +       I +AI
Sbjct: 79  RMSRELLGSSNNLMQENSLFDIVDTIRTAANDDRITGLILRLDNLVSADQPSMAYIGKAI 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ K     +  + +    A Y ++  ++ I  A    VG  G      Y K  L+KL V
Sbjct: 139 EEFKASGKSVYAMGDSYTQAQYYLASFADEIYLAPHGTVGIYGFSTDTLYYKSLLEKLKV 198

Query: 151 SIKSVKSSPMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   P     ++P+A +     + + +  ++  ++++R    +      
Sbjct: 199 SSHIFRVGTYKSAVEPMMRDNMSPEAREANLLWLTTLWDNYLGSIAQNRKTQAEHIFPGA 258

Query: 205 LVLSDGRIW----TGAEAKKVGLIDVVGGQEEV 233
             L          T   A +  L+D +  +E+ 
Sbjct: 259 DKLIAQLRLVKGDTAQYALQQKLVDKIYTREQA 291


>gi|149926443|ref|ZP_01914704.1| Peptidase family U7 [Limnobacter sp. MED105]
 gi|149824806|gb|EDM84020.1| Peptidase family U7 [Limnobacter sp. MED105]
          Length = 318

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 120/281 (42%), Gaps = 12/281 (4%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNS----PHVARIAIRGQIEDS-----QELIER 56
           ++    + ++ LV + ++  S        S     H A + + G I          +   
Sbjct: 28  RRWGIFFKLIGLVYVGILIASVLGLTATPSLEVSRHTALVDLDGVIASDSLASADRINSS 87

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYL 113
           +      + +  +I+ ++SPGGS      I   I++++ +   KP    V E+ AS GY 
Sbjct: 88  LRTAFESEGSVGVILRINSPGGSPVQAGLINDEIKRLRAKYPEKPFYAVVEEVCASGGYY 147

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           ++ A++ I   + SLVGSIGV+         ++KLGV  + + +   K    PFSE +P 
Sbjct: 148 VAAAADKIYVDKASLVGSIGVVMNGFGFTGTMEKLGVERRLITAGENKGFLDPFSEADPY 207

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
             +  + + +  +  F+++V E R     +   L  G +WTGA++ ++GL D +G  + V
Sbjct: 208 QTEFAKQMAEEIHQQFIQVVKEGRGEKLAQNPELFSGLVWTGAKSVELGLADELGSIDTV 267

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLED 274
            + +          +   +          +    + S+  +
Sbjct: 268 ARDVLKAEDILDYTEQDSFAERFAERVGVVFGQGVRSVFPE 308


>gi|262089779|gb|ACY24872.1| SppA signal peptide peptidase 67K type [uncultured organism]
          Length = 590

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 127/262 (48%), Gaps = 11/262 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATA 68
           V +         H       VA +   G I D         S+ ++E + ++  DD+  A
Sbjct: 278 VGVKSYLTDIRKHPTLEKNKVAVVVASGSIVDGHQPDGSIGSESMLELLRQVKDDDAIKA 337

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETS 127
           L++ + S GGSA+A E I   +  ++ +K  I   +  +AAS GY I+ A + I A  T+
Sbjct: 338 LVIRIDSGGGSAFASEIIRSEVIALREKKIPIYISMGTVAASGGYWIATAGDKIWAQPTT 397

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           + GSIGV   +P ++  L K+G++   V ++ +         ++ KA +++Q  VD+ Y 
Sbjct: 398 ITGSIGVFGAFPTLEKSLQKIGINTDGVGTTELAGSMRLDRPLSEKASKVVQMGVDNIYQ 457

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F+ LV+++R         ++ G +WTG +AK++GL+D +G   +V  ++          
Sbjct: 458 RFITLVADARKQEVKAIDEIAQGHVWTGNKAKEIGLVDELGTLNDVITAIAQEAKL-GSY 516

Query: 248 KIKDWNPPKNYWFCDLKNLSIS 269
           K++    P +     L++L+  
Sbjct: 517 KVEFVQRPLSPKEELLRSLTQG 538



 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 68/229 (29%), Gaps = 55/229 (24%)

Query: 51  QELIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
            +++E I   ++D     L++      GG       I +A++  K     I  V +  + 
Sbjct: 65  SDVVEAINNAAKDKRVAMLVLEPGRLLGGGVSKMNDIGQALENFKGAGKKIIAVSDNYSQ 124

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
             Y ++  ++ I   +  L+   G      Y K  LDKLGV+I + +S   K    P+  
Sbjct: 125 DQYYLASFADEIYLHDMGLIEITGYGRYMNYYKTALDKLGVTIHAFRSGKYKDYLEPYLR 184

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAK---------- 219
            +                       ESR         L     +TG              
Sbjct: 185 DDMSE--------------------ESREHNAQWINELWAS--YTGKIESLRKLPPGSIN 222

Query: 220 ----------------------KVGLIDVVGGQEEVWQSLYALGVDQSI 246
                                 +  L+D +  ++++ + L         
Sbjct: 223 DYVNNIDAHMLLTTGDSAKLALEKALVDKIVSRQDMEKMLIEQAGKSED 271


>gi|317013199|gb|ADU83807.1| protease IV (PspA) [Helicobacter pylori Lithuania75]
          Length = 292

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 126/256 (49%), Gaps = 4/256 (1%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESAPSTPPNLAKLYLNGAIFSTEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P     +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKDFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++  +A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARKLNAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQDRLMEL 252

Query: 241 GVDQSIRKIKDWNPPK 256
              +    ++     +
Sbjct: 253 SKVKKAYWLEKSPMER 268


>gi|317496118|ref|ZP_07954478.1| signal peptide peptidase SppA [Gemella moribillum M424]
 gi|316913693|gb|EFV35179.1| signal peptide peptidase SppA [Gemella moribillum M424]
          Length = 323

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 137/311 (44%), Gaps = 39/311 (12%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSH---------------------------VED 33
           M F  K++ +  +++ LV  +++  + +                               +
Sbjct: 1   MNFKNKRVISLVIVMVLVVFSLINGTLTKSTIQKQSTEDSYVQMFLRSQSVHKLTLVDGN 60

Query: 34  NSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
           +   + +I+I G+I            +I +I+    + +  A+++S+++PGG  Y    +
Sbjct: 61  SDETIQKISIEGEIGAEMTNTYSRASIINQIKEAKSNSNVKAILLSVNTPGGGVYETAEL 120

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
           +  ++   + K V   + + A S GY +S A+  I A   +  GS+GV+  +   + +L+
Sbjct: 121 YNELK--NSGKDVYVSMKKQATSGGYYVSMAAKKIFANTETTTGSLGVIMSFVSAQKYLN 178

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
             G+  ++++S   KA      ++     ++ Q+    +Y  FV+ +++ RN+  D+   
Sbjct: 179 DHGIKQETIRSGEQKAIGGLLEDLPESTRKIYQEQNKEAYDRFVKAIAQGRNMSEDEVRK 238

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK--NYWFCDLK 264
           L+DGR +TG +A +  LID +G +E++   +       +  K+ +  P K          
Sbjct: 239 LADGRTYTGTQAVENKLIDKIGTEEDLINFIKEDKKLFN-PKVIELRPDKAAESLLSRFV 297

Query: 265 NLSISSLLEDT 275
             ++ S++ + 
Sbjct: 298 KATMKSIISEL 308


>gi|300864377|ref|ZP_07109249.1| signal peptide peptidase A [Oscillatoria sp. PCC 6506]
 gi|300337603|emb|CBN54395.1| signal peptide peptidase A [Oscillatoria sp. PCC 6506]
          Length = 601

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 122/248 (49%), Gaps = 9/248 (3%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGS 79
           +   D+   +A I   G I D +          + + +  +  +++  A+++ ++SPGGS
Sbjct: 306 NARADDKKQIAVIYAEGDIVDGEGSPTQVGGDRIAKELRELRENENVKAVVLRVNSPGGS 365

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           A A E I R +   + +KPVI  +  +AAS GY IS  +N I A   ++ GSIGV     
Sbjct: 366 ATASEVIGREVVLTRKKKPVIVSMGNLAASGGYWISMNANRIFAEPNTITGSIGVFGLLM 425

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
             +   +  G+S  +VK+       +      P+ +  +Q VVD  Y  F + V++SR +
Sbjct: 426 NAQRLANNNGISWDTVKTGRYADSETISRPKTPQELANIQRVVDRIYDRFTQKVAQSRKL 485

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           P  K   ++ GR+W+G+ AK++GL+D +GG E   Q+            ++++   ++  
Sbjct: 486 PLAKVQEIAQGRVWSGSAAKQLGLVDEIGGIENAIQAAAKQAKLGDNWHLEEYPKRRSLE 545

Query: 260 FCDLKNLS 267
              L+ LS
Sbjct: 546 ERILERLS 553



 Score =  102 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 90/258 (34%), Gaps = 25/258 (9%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--------------------QELIE 55
            LV L V   S  S  +     V  + +   I DS                    + +++
Sbjct: 29  GLVILIVAAASKESGPQVKDKSVIVLDLSLNITDSKPNTTIGEALSEDRSDTMTLRSVLD 88

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGE--AIFRAIQKVKNRKPVITEVHEMAASAGYL 113
            +E   +D     L +  S+  GS        I  A+Q  +  K  I           Y 
Sbjct: 89  ALETAKKDPKIVGLYLQGSADSGSTGWANLKEIRLALQNFQKSKKPIFAYDMDWTEREYY 148

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVN 171
           +   +N I       V   G   +  ++   L+K G+ ++  +    K+   PF   +++
Sbjct: 149 LGSVANTIAVNPLGGVEINGFSSEQMFLSGALEKFGIGVQVTRVGKYKSAVEPFLLKKMS 208

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGGQ 230
           P+  Q  +  +   +  F+  V+++R +   +   ++D R      EA    LID V   
Sbjct: 209 PENRQQTEQWLGDIWSEFLNTVTQNRKLKTSQLQAIADNRGTLMADEALNSKLIDKVAYF 268

Query: 231 EEVWQSLYALGVDQSIRK 248
           +E+   L  L       K
Sbjct: 269 DEIVAELKKLTGIDRENK 286


>gi|227111464|ref|ZP_03825120.1| protease 4 [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 616

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 126/285 (44%), Gaps = 17/285 (5%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDS 65
            + +++             N+  +A +   G I D               +I     D  
Sbjct: 306 FNFISIYDYTI---KPPAQNNNQIAVVFANGAIIDGPETPGMVGGDTTAAQIRAARLDPK 362

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAA 124
             AL++ ++SPGGS  A E I   +  ++   KP++  +  MAAS GY IS  +N I+++
Sbjct: 363 VKALVLRVNSPGGSVTASELIRSELMALRLAGKPIVVSMGGMAASGGYWISTPANAIISS 422

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
            ++L GSIG+       +  L+ LGV    V +SP+       S + P+  QMMQ  ++ 
Sbjct: 423 ASTLTGSIGIFGVITTFEDSLENLGVHTDGVATSPLADLSITKS-LPPEFSQMMQLSIER 481

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            Y  F+ +V+++R    ++   ++ G +W G++AK+ GL+D +G  ++  +    L    
Sbjct: 482 GYKNFIDIVAQARKKTPEQIDQIAQGHVWVGSDAKENGLVDQIGDFDDAVKKAAELAKL- 540

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
              ++  +          L  ++ S      +P+  Q+ +    A
Sbjct: 541 GQYQLNWYAEQPGLLDTMLNQVNASVY--ALLPVAVQSMLPAPVA 583



 Score = 93.5 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 101/280 (36%), Gaps = 38/280 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + F+ + I   +++  ++    +Y    +  E+ +     + + G + D           
Sbjct: 19  LNFIREFILNIFLIALILVGVGIYSQVKTTPEEATKGALLVDLTGVVVDQPTVNNKLRQL 78

Query: 52  ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92
                             ++++ I +   DD+ T +++ LS   G+     + I +A+++
Sbjct: 79  GREFFGASNNRRQENSLFDIVDSIRQAKNDDNITGMVLDLSDFTGADQPSLQYIGKALRE 138

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            ++    I  V +    + Y ++  +N +       V   G      Y K  LDKL V+ 
Sbjct: 139 FRDSGKPIYAVGDSYNQSQYYLASFANTVSLTPQGSVDLHGFATNNLYFKSMLDKLKVTT 198

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203
              +    K+   P+   +++P A       +++ +  ++  VS +R I   +       
Sbjct: 199 NIFRVGTYKSAVEPYLRDDMSPAARDADGRWINALWQQYLNTVSANRQITPQQLFPGATN 258

Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
               L   +  T   A    L+D V  +    QSL     
Sbjct: 259 IIAGLQAVQGDTARYALDNKLVDEVASRSVTEQSLVKAFG 298


>gi|239828047|ref|YP_002950671.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. WCH70]
 gi|239808340|gb|ACS25405.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. WCH70]
          Length = 336

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/274 (24%), Positives = 129/274 (47%), Gaps = 19/274 (6%)

Query: 37  HVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYA 82
            +  + + G I+D               Q  +  IE+   DD+  A+++ ++SPGG    
Sbjct: 61  KIVVLEVNGVIQDVGDTGALFAAAGYDHQSFLRMIEQAKNDDTVKAIVLRVNSPGGGVVE 120

Query: 83  GEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
              I   + ++K   +KP+   +  MAAS GY IS A + I A+  ++ GS+GV+ Q   
Sbjct: 121 SAEIHDQLLELKKETKKPIYVSMGSMAASGGYYISTAGDKIFASPETITGSLGVIMQSLN 180

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
            +    K GV + ++KS P K   +P  ++  +  +++Q ++ +SY  FV+++SE R++P
Sbjct: 181 YEGLAKKYGVELVTIKSGPYKDIMNPARKMTEEEKEILQQLIRNSYEGFVKVISEGRHLP 240

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
             +   ++DGRI+ G +AK++ LID  G  ++   +L         + +K  N       
Sbjct: 241 ESEVRKIADGRIYDGRQAKQLKLIDEFGYLDDTIAALKKDHHLADAQVVKYTNEFSFGSL 300

Query: 261 CDLK---NLSISSLLEDTIPLMKQTKVQGLWAVW 291
             +    N +      + I L+       L  ++
Sbjct: 301 FQMAFNQNTTPKHEATELIKLLSNPSSPRLMYLY 334


>gi|298293883|ref|YP_003695822.1| signal peptide peptidase SppA, 36K type [Starkeya novella DSM 506]
 gi|296930394|gb|ADH91203.1| signal peptide peptidase SppA, 36K type [Starkeya novella DSM 506]
          Length = 324

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 87/272 (31%), Positives = 146/272 (53%), Gaps = 14/272 (5%)

Query: 34  NSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
           +SPHVAR+AI G I + +E +E +E I +   A A+I+S+ SPGG+     A++  ++++
Sbjct: 52  SSPHVARVAIGGLIRNERERLEMLEDIGK-SGAKAVILSIDSPGGTVVGSAALYDGLRRL 110

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
             +KP++  V  +AAS  Y+ +  ++ IVA   +LVGSIGV+FQ+P     +  +GV+ +
Sbjct: 111 AEKKPIVAVVDGIAASGAYIAALGADHIVAPRNALVGSIGVIFQFPNFAELMKSVGVAYE 170

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
            +KS+P+KA P+ F   + +A   ++ +V+ SY WF  LVSE R +  DK    SDGR++
Sbjct: 171 EIKSTPLKAAPNMFDPPSEEARAAVRSLVEDSYDWFKGLVSERRLLDGDKLASASDGRVF 230

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK-----------NYWFCD 262
           TG +A  + LID +G +      L           ++DW+  +           +     
Sbjct: 231 TGHQALPLRLIDEIGDERTARDWLARERGVSKDLPVRDWHTKRVGDEFGWLRGTSVRLMS 290

Query: 263 LKNLS--ISSLLEDTIPLMKQTKVQGLWAVWN 292
           L  L    +  +     L  Q ++ GL A+W 
Sbjct: 291 LIGLGDLANLTIGAASDLAMQARLDGLLALWQ 322


>gi|189182992|ref|YP_001936777.1| protease IV [Orientia tsutsugamushi str. Ikeda]
 gi|189179763|dbj|BAG39543.1| protease IV [Orientia tsutsugamushi str. Ikeda]
          Length = 302

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 146/288 (50%), Gaps = 11/288 (3%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVE-----DNSPHVARIAIRGQIEDSQELIERIERISRD 63
           K + + L L+T  VV F + + V          ++A I I   I D  +L   + +I  D
Sbjct: 20  KWKILTLLLITAIVVLFIFRNRVGYSPSLATGDYIANIQIDDLIYDDIKLNNLLHQIKND 79

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
           D A ALI+ + SPGG+    E I+  ++ + N KPV+  +  +AAS GYL++ A++ I+A
Sbjct: 80  DKAKALILHVDSPGGTVAGSEKIYGILRSISNSKPVVAVLGTVAASGGYLVALAADYIIA 139

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
            ++++ GSIG++   P +  F +K+G+   + KS  +KA PS   +V P   +    +++
Sbjct: 140 QKSTVTGSIGIVHFSPEITEFGEKIGIKFHTFKSGELKAAPSLTEKVTPAVHEATMTLIN 199

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
             Y +FV LV+E R +  ++ L ++DG+ +TG +A  + LID +G  E+    L      
Sbjct: 200 DMYDFFVELVAERRQMSPEQVLKVADGKAYTGRQALSLNLIDALGTTEDALTWLQQEKKL 259

Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
               ++ + +           +  I     +   L   +K+ G+ A++
Sbjct: 260 SLDLRVIELHTQTK------LDSYIELFQNNIRKLFFGSKINGVMALY 301


>gi|86608463|ref|YP_477225.1| signal peptide peptidase SppA, 36K type [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557005|gb|ABD01962.1| signal peptide peptidase SppA, 36K type [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 268

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 126/241 (52%), Gaps = 5/241 (2%)

Query: 37  HVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
            + RI + G I+    + +++ ++ +  +    A+++ + SPGG+    + I+ A+ +++
Sbjct: 13  QIGRIEVAGAIDGKTRERVLKALKEVEEN-QIPAVVLRIDSPGGTVADSQEIYNALLRLR 71

Query: 95  NRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            +K   ++     +AAS G  I+  +  IVA   ++ GSIGV+ +   ++  LDK+G+S 
Sbjct: 72  EKKGTRIVASFGNIAASGGVYIAMGAEKIVANPGTITGSIGVIIRGNNIERLLDKVGISF 131

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
           K +KS P K   S   E+ P+   ++Q+++D +Y  FV+ V+ +R +  +     +DGRI
Sbjct: 132 KVIKSGPYKDILSFDRELTPEERNILQELIDITYGQFVQTVAAARKLSLNVVKTFADGRI 191

Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
           ++G +A  +G++D +G +E+       L    +  K  D  P +  W   L      + L
Sbjct: 192 FSGEQALHLGVVDRLGTEEDARLWAAELAGLPTDAKFYDLLPRRRGWSRFLPAAEALARL 251

Query: 273 E 273
           +
Sbjct: 252 Q 252


>gi|123442511|ref|YP_001006488.1| protease 4 [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122089472|emb|CAL12320.1| protease IV [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 616

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/273 (24%), Positives = 123/273 (45%), Gaps = 18/273 (6%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
           +        +A +   G I D            L  +I +   D    A+I+ ++SPGGS
Sbjct: 317 TPTPQQGEQIAVLFANGAIMDGPQTPGNVGGDVLAAQIRQARLDPKIKAVILRVNSPGGS 376

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +  ++   KP++  +  MAAS GY IS  +N I+A  ++L GSIG+    
Sbjct: 377 VSASELIRTELAALRAANKPLVVSMGGMAASGGYWISTPANYIIANPSTLTGSIGIFGVI 436

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  L+ +GV    V +SP+        ++ P+  QMMQ  +++ Y  F+ LV+ +R+
Sbjct: 437 NTFQNTLESIGVHTDGVATSPLANVSVT-KDLPPEFSQMMQINIENGYKTFIDLVATARH 495

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256
              ++   ++ G +W G +AK  GL+D +G  ++  + +  L   +   +    D     
Sbjct: 496 KTPEQVDQIAQGHVWIGIDAKNNGLVDQLGDFDDAVKKVAELAKLKTWQLNWFVD----- 550

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                DL    +S+ ++  +P   Q  +    +
Sbjct: 551 EPSLSDLIFGQMSASVQAMLPTAIQAWLPAPIS 583



 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 98/293 (33%), Gaps = 44/293 (15%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIE 55
           +Y  + S   +       + + G + D                             +++E
Sbjct: 41  IYLQFQSKPAEPVKGALLVNLSGVVVDQPAVNNKLRQWGRELLGASSNRLQENSLFDIVE 100

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114
            I     D++ T L++SLS   G+     + I +A+++ ++    I  + E  +   Y +
Sbjct: 101 TIRLAKADNNITGLVLSLSDFTGADQPSLQYIGKALREFRDSGKPIYAIGESYSQTQYYL 160

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172
           +  +N I  +    V   G      Y K  L+KL V+    +    K+   P    +++P
Sbjct: 161 ASFANKIYLSPQGTVALHGFASNNLYYKSLLEKLKVTTNIFRVGTYKSAVEPMIRDDMSP 220

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLI 224
            A +     +   +  ++  V+ +R +  ++           L          A    L+
Sbjct: 221 AAREADTRWIGGLWQNYLTAVAANRQLTPEQLFPGAAGVVSGLQAAGGSQAQYALSSKLV 280

Query: 225 DVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           D +  + E+   L           D +   I D+ P       +   +  ++ 
Sbjct: 281 DQLATRPEMENELVKAFGWDKKNNDFNYVSIYDYQPTPTPQQGEQIAVLFANG 333


>gi|332288260|ref|YP_004419112.1| putative protease [Gallibacterium anatis UMN179]
 gi|330431156|gb|AEC16215.1| putative protease [Gallibacterium anatis UMN179]
          Length = 619

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 128/274 (46%), Gaps = 17/274 (6%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVS 72
           +            S ++A + + G I D +          +   + + + + +  A+++ 
Sbjct: 309 LYSLPDYETANATSNNIAVLRVEGTIIDGESDDENVGGDTIARLLRQAAENTAVKAVVLR 368

Query: 73  LSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
           ++SPGGSA+A E I   ++ ++   KPV+  +  MAAS GY I+  ++ I+A + ++ GS
Sbjct: 369 INSPGGSAFASEVIREEVEHLQQIGKPVVVSMGGMAASGGYWIASTADYIIADKNTITGS 428

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IG+   +  ++  L  LG+    VK+SP+ +  SPF+ ++ +   ++Q  ++  Y  F+ 
Sbjct: 429 IGIFAAFVTLEKSLANLGIHSDGVKTSPLAS-MSPFTALSQEYSDVIQMSIEHGYDQFIS 487

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL------YALGVDQS 245
           LV++ R +   +   ++ GR+W G +A K  L+D +G                  G+   
Sbjct: 488 LVAKGRKLDKSQVDKIAQGRVWLGEDALKYKLVDELGDFNTAIAVASEKIREKEKGLTDD 547

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
                  +  ++     L     SS+L+D +  +
Sbjct: 548 QIGFLWLSEDQSKGLLSLLGQKKSSMLQDLLRSI 581



 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/326 (12%), Positives = 113/326 (34%), Gaps = 41/326 (12%)

Query: 1   MEFVLKKIKTR-YVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQE------ 52
           + F+ + +    ++ ++ + L           +   P  A R+ + G + D+++      
Sbjct: 13  LNFLRRVLMNLAFLFVAGILLFSSTLFVEEQRKQPVPQGALRLNLDGFLADNRDQNSGLK 72

Query: 53  -------------------LIERIERISRDDSATALIVSLSSPGGSAYAGEA-IFRAIQK 92
                              ++  I +  +D+    +++ L+   G        I +A+ +
Sbjct: 73  ALLNNVQKQVISEKISVFDVVFAITQAKKDERIKGIVLDLNYFEGGDLPSITFIGKALNE 132

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            K     +  V +  +   Y+++  ++ I       V   G+  +  Y K  LDK+    
Sbjct: 133 FKQSGKPVIAVSDNYSQKQYILASYADKIYLHRQGQVELTGLGGEQFYYKSLLDKIDAQP 192

Query: 153 KSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT------ 204
              +    K+   P    +++  A Q     +++ ++     VS +R++  ++       
Sbjct: 193 HIFRVGTYKSAVEPLLRDDMSEAARQNASQWLNAMWNNIKTTVSNNRHLKQEQIFPSTND 252

Query: 205 --LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               + + +      A    L+  V  + ++  +L              +    NY +  
Sbjct: 253 FLQQVKNLKGDLTQYALTNKLVTEVATRYQISAALKQQFGADRENNTYQYIDFSNYLYS- 311

Query: 263 LKNLSISSLLEDTIPLM--KQTKVQG 286
           L +   ++   + I ++  + T + G
Sbjct: 312 LPDYETANATSNNIAVLRVEGTIIDG 337


>gi|113954895|ref|YP_731303.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp.
           CC9311]
 gi|113882246|gb|ABI47204.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp.
           CC9311]
          Length = 258

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/259 (26%), Positives = 133/259 (51%), Gaps = 6/259 (2%)

Query: 39  ARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           ARIAI G I  S  + +++ ++ +   +   AL++ + SPGG+    + I  A+ +++ +
Sbjct: 2   ARIAIEGAITGSTRRRVLKALKEVQERE-FPALLLRIDSPGGTVGDSQEIHSALLRLREK 60

Query: 97  K-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
              V+     ++AS G  +  A+  IV+   ++ GSIGV+ +   +   LD++GV  ++V
Sbjct: 61  GCHVVASFGNISASGGVYVGVAAETIVSNPGTITGSIGVILRGNNLSKLLDRVGVKFETV 120

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215
           KS   K   SP   +  +  +++Q ++DSSY  FV  V+E R +   +    +DGR+++G
Sbjct: 121 KSGVFKDILSPDRALGAEERELLQALIDSSYEQFVAAVAEGRKLDPSRVREFADGRVFSG 180

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR-KIKDWNPPKNYWFCDLKNLSISSLLED 274
           A+AK +GL+D +G +E        L      R ++     P+      L   ++   +++
Sbjct: 181 AQAKDLGLVDELGDEERARVLAAQLADLDEERCRVVTLGKPRKPLLQGLSGSNLLVRIQE 240

Query: 275 TIPLMKQTKVQGLWAVWNP 293
            + +  +   Q LW ++ P
Sbjct: 241 LVTVEMELSGQPLW-LFRP 258


>gi|307155357|ref|YP_003890741.1| signal peptide peptidase SppA, 36K type [Cyanothece sp. PCC 7822]
 gi|306985585|gb|ADN17466.1| signal peptide peptidase SppA, 36K type [Cyanothece sp. PCC 7822]
          Length = 274

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/263 (25%), Positives = 140/263 (53%), Gaps = 6/263 (2%)

Query: 34  NSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
            S  +ARI I G I     +++++ ++++       AL++ + SPGG+    + I++A++
Sbjct: 9   TSKQIARIEITGVIASQTRKQVLKALKKVEE-KKYPALLLRIDSPGGTVGDSQEIYQALR 67

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           +++++  ++     ++AS G  I   +  I+A   ++ GSIGV+ +   ++  LDK+GVS
Sbjct: 68  RLQDKVKIVASFGNISASGGVYIGMGAQHIMANPGTITGSIGVIIRGNNLERLLDKIGVS 127

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
            K +KS P K   S   +++     ++Q+++D SY  FV+ V++SRN+  +     +DGR
Sbjct: 128 FKVIKSGPYKDILSFDRDLSAAEQDILQEMIDISYQQFVQTVADSRNLEVETVKTFADGR 187

Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR-KIKDWNPPKNYWFCDLKNLSIS- 269
           I+TG +A  +G++D +G +E+  + L  L     ++ + +    PK+     L +  I+ 
Sbjct: 188 IFTGEQALNLGVVDRLGSEEDARRWLAELVGLDPLKTECQTIEQPKSLVNRILGSTRIAT 247

Query: 270 -SLLEDTIPLMKQTKVQGLWAVW 291
            S L   +  ++         +W
Sbjct: 248 KSRLGGALDWVEFELATNNLPLW 270


>gi|217032126|ref|ZP_03437626.1| hypothetical protein HPB128_16g86 [Helicobacter pylori B128]
 gi|298735604|ref|YP_003728127.1| protease IV [Helicobacter pylori B8]
 gi|216946274|gb|EEC24882.1| hypothetical protein HPB128_16g86 [Helicobacter pylori B128]
 gi|298354791|emb|CBI65663.1| protease IV [Helicobacter pylori B8]
          Length = 292

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 133/277 (48%), Gaps = 7/277 (2%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESAPSEPPNLAKLYLNGAIFSTEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           +  ++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P   + +Q+
Sbjct: 133 VYVSKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++   A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVDDVAKARKLDAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQDRLMEL 252

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
              +    ++     +   F +    S S+++   + 
Sbjct: 253 SKVKKAYWLEKSPMER---FIEKATQSASNIITQALG 286


>gi|217034551|ref|ZP_03439960.1| hypothetical protein HP9810_874g8 [Helicobacter pylori 98-10]
 gi|216942971|gb|EEC22454.1| hypothetical protein HP9810_874g8 [Helicobacter pylori 98-10]
          Length = 292

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 127/256 (49%), Gaps = 4/256 (1%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESTPSAPPNLAKLYLNGAIFSTEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P   + +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++  +A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQNRLMEL 252

Query: 241 GVDQSIRKIKDWNPPK 256
              +    ++     +
Sbjct: 253 SKVKKAYWLEKSPMER 268


>gi|325281704|ref|YP_004254246.1| signal peptide peptidase SppA, 67K type [Odoribacter splanchnicus
           DSM 20712]
 gi|324313513|gb|ADY34066.1| signal peptide peptidase SppA, 67K type [Odoribacter splanchnicus
           DSM 20712]
          Length = 599

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/275 (24%), Positives = 125/275 (45%), Gaps = 20/275 (7%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDSQ-------ELIERIERISRDDSATALIVSLSSP 76
                  +E N   +A +   G+I   Q       EL + I +I  D++  A+++ ++SP
Sbjct: 299 ASVPEVPIEFNKDKIAVVYASGEIGLEQKNNTIGPELAKTIRKIREDNTVKAIVLRVNSP 358

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GGSA   + I+R ++     KPVI  +  +AAS GY ISCA++ IVA  T+L GS G+  
Sbjct: 359 GGSALTSDIIWREVELATQTKPVIVSMGNVAASGGYYISCAADTIVAEPTTLTGSTGIFG 418

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV---------NPKAVQMMQDVVDSSYH 187
            +   +  ++        V  +   ++      +          P    ++Q+ V+  Y 
Sbjct: 419 MFFSGEKLIEDKMGIHTDVVKTNDHSDFGGSYPLPLPVSNRALTPYERNVLQNYVNQGYE 478

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F+  V   R + +D+   ++ GR+WTG +A K+GL+DV+GG E+  +        +   
Sbjct: 479 TFLSRVMSGRGLTHDELHAIAQGRVWTGEDALKIGLVDVLGGLEDAIRIAAQKAGIEK-Y 537

Query: 248 KIKDWNPPKNYWFCDLKNLSI---SSLLEDTIPLM 279
            + ++   K+         +    + LL++ +   
Sbjct: 538 NLTEYPVVKSPIEELFAEFTTEVKARLLKEELGTF 572



 Score = 95.4 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 108/288 (37%), Gaps = 39/288 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVY----------FSWSSHVEDNSPHVARIAIRGQIEDS 50
           M+  LK      V + +V + + +                V   +  +  I + G+I D 
Sbjct: 1   MKSFLKYTLATIVGIMIVHVILFFIFIGFIGAIASFSEKTVTVKNNSILTIKLEGEILDR 60

Query: 51  QE----------------------LIERIERISRDDSATALIVSLSSPG---GSAYAGEA 85
                                   ++  I++ ++D     + + L+      G+    + 
Sbjct: 61  TSDNPLDNIDFLSFTPKKNLGLNKILASIQKAAKDSRIQGIYLDLTEIQGNFGALAFTQE 120

Query: 86  IFRAIQKVKNRKPVITEVHEM-AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           I  A+QK K     I     +  +   Y ++  ++ I     + +   G+     + K  
Sbjct: 121 IRNALQKFKESGKFIYSYSNLGYSQKSYYLATVADKIFVNPETPLLLTGMSSSISFYKET 180

Query: 145 LDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
           L KLG+  + VK    K+   PF   E++P   + +Q  +DSS+   V+ ++ESRNIP D
Sbjct: 181 LAKLGIQPEVVKVGKFKSAVEPFISDEMSPANREQVQKYLDSSWGTIVKGIAESRNIPVD 240

Query: 203 KTLVLSDG-RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
               L++    +T  + +  G  D V  ++++   L       S   +
Sbjct: 241 SINALANRFDFYTTRQFQDFGFFDGVLYEDQMLALLKEKCGVGSSDPL 288


>gi|254779946|ref|YP_003058053.1| Signal peptide protease IV (Protease IV) (Endopeptidase IV)
           [Helicobacter pylori B38]
 gi|254001859|emb|CAX30109.1| Signal peptide protease IV (Protease IV) (Endopeptidase IV)
           [Helicobacter pylori B38]
          Length = 292

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 133/277 (48%), Gaps = 7/277 (2%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESTPSTPPNLAKLYLNGAIFSTEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P   + +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++   A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQDRLMEL 252

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
              +    ++     +   F +    S S+++     
Sbjct: 253 SKVKKAYWLEKSPMER---FIEKATQSASNIITQAFG 286


>gi|239501011|ref|ZP_04660321.1| signal peptide peptidase SppA, 36K type [Acinetobacter baumannii
           AB900]
          Length = 338

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 132/297 (44%), Gaps = 18/297 (6%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQI-------EDSQELI 54
             K +   Y++  +V +     +    S    +S H+A + I G I        +S++  
Sbjct: 45  FFKTLTFIYLLFIIVLMGKGCSTTKDGSTASSSSAHLAVVDIIGTIDASSNQAVNSEDTN 104

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAG 111
           + ++R     ++ A+ ++++SPGGS    + I++ I+ +      K V   + +M AS  
Sbjct: 105 KALKRAFEASNSKAIALNINSPGGSPVQSDEIWQEIRYLKKEHPDKKVYAVIGDMGASGA 164

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I+   +SLVGSIGV+     +     KLG+  +++ +   K   S    +N
Sbjct: 165 YYIASAADEIIVNPSSLVGSIGVIMPNYGITGLAQKLGIEDRTLTAGANKDILSMTKPIN 224

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQ 230
           P   Q +Q V+D+ +  F+  V E R          +  G  WTG +A ++G+ D  G  
Sbjct: 225 PVQRQHIQSVLDNVHTHFINAVKEGRGKRLKTNDPAIFSGLFWTGEQAIQLGVADRSGNI 284

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYW--FCDLKNLSISSLLEDTIPLMKQTKVQ 285
             + + L    +D  +    + NP ++            +S  + + +   +  K+Q
Sbjct: 285 TSLMRELK---LDNKVDYTIERNPLQSILGRMGSEMGKGLSESVAERLQTSQDAKLQ 338


>gi|169632699|ref|YP_001706435.1| putative protease; signal peptide peptidase sppA [Acinetobacter
           baumannii SDF]
 gi|169795044|ref|YP_001712837.1| putative protease; signal peptide peptidase sppA [Acinetobacter
           baumannii AYE]
 gi|213158294|ref|YP_002320345.1| signal peptide peptidase SppA, 36K type [Acinetobacter baumannii
           AB0057]
 gi|215482593|ref|YP_002324785.1| signal peptide peptidase SppA, 36K type [Acinetobacter baumannii
           AB307-0294]
 gi|301348285|ref|ZP_07229026.1| signal peptide peptidase SppA, 36K type [Acinetobacter baumannii
           AB056]
 gi|301512406|ref|ZP_07237643.1| signal peptide peptidase SppA, 36K type [Acinetobacter baumannii
           AB058]
 gi|301596270|ref|ZP_07241278.1| signal peptide peptidase SppA, 36K type [Acinetobacter baumannii
           AB059]
 gi|169147971|emb|CAM85834.1| putative protease; signal peptide peptidase sppA [Acinetobacter
           baumannii AYE]
 gi|169151491|emb|CAP00252.1| putative protease; signal peptide peptidase sppA [Acinetobacter
           baumannii]
 gi|213057454|gb|ACJ42356.1| signal peptide peptidase SppA, 36K type [Acinetobacter baumannii
           AB0057]
 gi|213987631|gb|ACJ57930.1| signal peptide peptidase SppA, 36K type [Acinetobacter baumannii
           AB307-0294]
 gi|323519116|gb|ADX93497.1| periplasmic serine protease (ClpP class) [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 338

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 132/297 (44%), Gaps = 18/297 (6%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQI-------EDSQELI 54
             K +   Y++  +V +     +    S    +S H+A + I G I        +S++  
Sbjct: 45  FFKTLTFIYLLFIIVLMGKGCSTTKDGSTASSSSAHLAVVDIIGTIDASSNQAVNSEDTN 104

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAG 111
           + ++R     ++ A+ ++++SPGGS    + I++ I+ +      K V   + +M AS  
Sbjct: 105 KALKRAFEASNSKAIALNINSPGGSPVQSDEIWQEIRYLKKEHPDKKVYAVIGDMGASGA 164

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I+   +SLVGSIGV+     +     KLG+  +++ +   K   S    +N
Sbjct: 165 YYIASAADEIIVNPSSLVGSIGVIMPNYGITGLAQKLGIEDRTLTAGTNKDILSMTKPIN 224

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQ 230
           P   Q +Q V+D+ +  F+  V E R          +  G  WTG +A ++G+ D  G  
Sbjct: 225 PVQRQHIQSVLDNVHTHFINAVKEGRGKRLKTNDPAIFSGLFWTGEQAIQLGVADRSGNI 284

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYW--FCDLKNLSISSLLEDTIPLMKQTKVQ 285
             + + L    +D  +    + NP ++            +S  + + +   +  K+Q
Sbjct: 285 TSLMRELK---LDNKVDYTIERNPLQSILGRMGSEMGKGLSESVAERLQTSQDAKLQ 338


>gi|171463178|ref|YP_001797291.1| peptidase S49 [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171192716|gb|ACB43677.1| peptidase S49 [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 313

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/281 (25%), Positives = 127/281 (45%), Gaps = 16/281 (5%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVED--NSPHVARIAIRGQIEDSQ-----ELIERIE 58
           K +     +L +V++ +  F +    +      H A + + G+I  S      ++   + 
Sbjct: 32  KAVLRVLTLLVIVSVLLSIFDFHLPGKGMGVEKHTALVTLEGEISSSSMANAMDINSSLL 91

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAGYLIS 115
               ++ +  +++ ++SPGG       I   I   +K+   KP    V ++ AS GY ++
Sbjct: 92  SAFENEHSVGVVLRINSPGGFPVQAGMINDEIHRLRKLYPSKPFYVVVEDICASGGYYVA 151

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            AS+ I+  + SLVGSIGV+ +       +DKLGV+ + + S   K    PFS+ NPK V
Sbjct: 152 VASDQILVDKASLVGSIGVIMEGFGFTGLMDKLGVTRRMITSGSNKGMLDPFSKENPKQV 211

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           +M++ ++D  +  F+ +V E R         L  GRIW G +A K+GL D  G  + V +
Sbjct: 212 EMVKTMIDEIHQQFIAVVKEGRGDRLKDMPDLFSGRIWNGEQAVKIGLADGYGTVDTVAR 271

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
            +           I D+   +N+     K     +     +
Sbjct: 272 DILK------APDILDYTMKENFAERVAKRFGAEAAAGKAL 306


>gi|282899429|ref|ZP_06307396.1| Peptidase S49, protease IV [Cylindrospermopsis raciborskii CS-505]
 gi|281195693|gb|EFA70623.1| Peptidase S49, protease IV [Cylindrospermopsis raciborskii CS-505]
          Length = 607

 Score =  137 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 122/266 (45%), Gaps = 10/266 (3%)

Query: 18  VTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSAT 67
           + +      S     +++   +A +   G+I D +            + + +I +D    
Sbjct: 296 IGIGDYLQASEIKEQQNSQNKIAVVYAEGEIVDGEGESSQIGGDRYAKVLRKIRQDQDIK 355

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           ++++ ++SPGGSA A E I R IQ  K  KPVI  + ++AAS GY I+  S+ I A   +
Sbjct: 356 SVVLRINSPGGSATASEIIEREIQLTKQVKPVIVSMGDVAASGGYWIASNSDHIFAEPGT 415

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIGV       +   +  G++  +VK+S      +     +P+ + + Q  V+  Y+
Sbjct: 416 LTGSIGVFGVLLNGQKLANNNGITWDTVKTSEFADSQTVSRPKSPQELAIYQRSVNRIYN 475

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F+  V + R +P  K   ++ GR+W+GA AK++GL+D +GG     +            
Sbjct: 476 MFINKVVQGRKLPETKVGEIAQGRVWSGATAKQIGLVDEIGGLNIAIEYAAKKAKLGKDW 535

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLE 273
           +++++                 +++ 
Sbjct: 536 QVEEYPEVTTLGERFFGKKLEEAIIG 561



 Score = 93.9 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 94/243 (38%), Gaps = 7/243 (2%)

Query: 51  QELIERIERISRDDSATALIVSLSSPG----GSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           ++LI  +E+ + D     + + +S           +   I +A++K +     I      
Sbjct: 87  RQLIGALEQAAEDQRIAGIYIDVSESSKVSSLGYASLREIRQALEKFRASGKKIIAYGVG 146

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            +   Y +S  ++ I      ++   G+  Q  ++   L+K G+ ++ V+    K    P
Sbjct: 147 WSEREYYLSSVADKIFLNPVGMMEINGLSSQPIFLTGALEKYGIGVQVVRVGKFKGAVEP 206

Query: 167 F--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL-SDGRIWTGAEAKKVGL 223
               +++P+  +  Q ++D  +  +   V +SR I  +    + ++  +    +AK  GL
Sbjct: 207 LVLDKLSPENREQTQQLLDDLWGEWRNSVGKSRKISPEILQEIANNQGVLEAKDAKNNGL 266

Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
           ID V   ++V   L  +G   +  K        +Y          +S  +  +   +   
Sbjct: 267 IDEVAYTDQVVADLKKIGTSDNDGKSFRQIGIGDYLQASEIKEQQNSQNKIAVVYAEGEI 326

Query: 284 VQG 286
           V G
Sbjct: 327 VDG 329


>gi|15646044|ref|NP_208226.1| protease IV (PspA) [Helicobacter pylori 26695]
 gi|2314611|gb|AAD08477.1| protease IV (PspA) [Helicobacter pylori 26695]
          Length = 292

 Score =  137 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 126/256 (49%), Gaps = 4/256 (1%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESAPSAPPNLAKLYLNGAIFSTEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P     +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKDFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++  +A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQDRLMEL 252

Query: 241 GVDQSIRKIKDWNPPK 256
              +    ++     +
Sbjct: 253 SKVKKAYWLEKSPMER 268


>gi|254468276|ref|ZP_05081682.1| peptidase S49 [beta proteobacterium KB13]
 gi|207087086|gb|EDZ64369.1| peptidase S49 [beta proteobacterium KB13]
          Length = 316

 Score =  137 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 66/283 (23%), Positives = 125/283 (44%), Gaps = 15/283 (5%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSW----SSHVEDNSPHVARIAIRGQIEDSQEL-----IER 56
           ++    + +++ + L ++ F +       V  +    A + + G I    E+     I+ 
Sbjct: 30  RRWSNFFKIVTFLYLFILLFIFLGKPGDQVSASGEFTALVKLNGIISSESEINAEDAIKS 89

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYL 113
           +++  ++D    LIVS++SPGGS      I   I+++      KP+   V ++ AS GY 
Sbjct: 90  LQKAMKNDGTKGLIVSINSPGGSPVQSAMINDEIKRLKLIYPEKPIKVVVEDVCASGGYF 149

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           I+ A++ I A ++S+VGSIGVL         ++KLG+  + + +   K    PF  ++P 
Sbjct: 150 IAVAADDIYANKSSIVGSIGVLMNGFGFDQAIEKLGIERRLMTAGKNKGILDPFQPIDPT 209

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
             + +Q ++D  +  F+  V E R     +   +  G  W G  A K+GLID  G    +
Sbjct: 210 HRKHVQQLLDEVHQQFITAVKEGRGDRLSEDQSIFSGLFWNGESAYKLGLIDGFGTVSSI 269

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
            + +      + +     +    + +   L     S L    I
Sbjct: 270 AKDVI---GYEKVIDFTTYETFADRFAKKLGAGIGSVLHSQVI 309


>gi|167645285|ref|YP_001682948.1| signal peptide peptidase SppA, 67K type [Caulobacter sp. K31]
 gi|167347715|gb|ABZ70450.1| signal peptide peptidase SppA, 67K type [Caulobacter sp. K31]
          Length = 595

 Score =  137 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 116/288 (40%), Gaps = 18/288 (6%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED----------------SQELIERIERI 60
           L+                 P +A ++  G I                  S ++ + +   
Sbjct: 278 LIDFDDYVSRAKRAPIKTGPTIAVVSAEGAIMTGSGSGGSPFGGDSTIYSDQVSKALYDA 337

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASN 119
             D    A++  +SSPGGS  A E I  A++  +   KPV+  +   AAS GY IS  ++
Sbjct: 338 IDDKDVKAIVFRVSSPGGSDTASEQILAAVKAARKAGKPVVVSMGTYAASGGYWISSGAS 397

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-PMKAEPSPFSEVNPKAVQMM 178
            IVA  T+L GSIGV      +   L + GV  + V                 P      
Sbjct: 398 AIVAEPTTLTGSIGVFGGKFALGEALARFGVDTRQVHVGGDYAGAFGTGEGFTPDQRAKF 457

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
              +D  Y  FV  V+E R++P ++   ++ GR+WTG +AK++GL+D +GG  E  +   
Sbjct: 458 SAWMDRIYAGFVGRVAEGRHLPPERVREIAKGRVWTGVQAKQLGLVDELGGFYEAVEKAK 517

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +L   +   K+K      + +    K L +SS    T+          
Sbjct: 518 SLAGLKGEVKLKKIGASNSPFDALEKVLGVSSASMRTLAASAWLLGDP 565



 Score = 83.1 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 100/259 (38%), Gaps = 29/259 (11%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRGQIEDSQE---------------- 52
           ++L LV +  +    ++     +P     V ++ +RG + D +                 
Sbjct: 15  LVLFLVGVPFLLIVMAASATRPAPVPAHTVLQLDLRGGLSDQESQNPFAAFSGGGGQSVM 74

Query: 53  -LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASA 110
            ++E + R   D+   A++V L   G +  + + +  A +  +   K  I    +    +
Sbjct: 75  SIVETLRRAETDEKVKAVLVRLPEGGMAPASADELRLAFKHFRAVGKKPIFAHSQGLYPS 134

Query: 111 -----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
                 Y++  A++       S + ++G   +  + K F DK GV  +  +    K   +
Sbjct: 135 GLVTSTYMLGAAASEFWMQPDSSLQAVGAASEEMFFKRFFDKYGVKAEYEQRYEYKNAVN 194

Query: 166 PF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
           P+  S+  P   +     + S Y   +   ++ R +     +   +   ++  EAK  GL
Sbjct: 195 PYLYSDYTPAHRESTLSWMGSVYTSALTTAAQDRKVDPAALVKTIEAGPYSAEEAKAKGL 254

Query: 224 IDVVGGQEEVWQSLYALGV 242
           ID VG  +EV  ++ +   
Sbjct: 255 IDRVGQVKEVQDAMLSRAG 273


>gi|296102810|ref|YP_003612956.1| protease 4 [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295057269|gb|ADF62007.1| protease 4 [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 618

 Score =  137 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 128/273 (46%), Gaps = 14/273 (5%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPG 77
            +   +++   VA +   G I D QE            +I     D    A+++ ++SPG
Sbjct: 317 AAKKPDESGDSVAVVFANGAIMDGQETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPG 376

Query: 78  GSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GS  A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+  
Sbjct: 377 GSVSASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFG 436

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
               V+  LD LGV    V +SP+       S + P+  +MMQ  +++ Y  F+ LV++S
Sbjct: 437 VINTVENSLDYLGVHTDGVATSPLADVSVTKS-LPPEVSEMMQLSIENGYKRFITLVADS 495

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R     +   ++ G +WTG +AK  GL+D +G  ++  +    L        ++ +    
Sbjct: 496 RKKTPQQIDEIAQGHVWTGQDAKSNGLVDSLGDFDDAVKKAAELAKL-KQWHVEYYQDEP 554

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +++   + ++S+S  +   +P   Q  +    A
Sbjct: 555 SFFDMVMDSMSVS--VRAMLPEALQAYLPAPVA 585



 Score = 98.1 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKTR-YVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV   +    +++L LV   +    S ++  + ++     + I G I D         
Sbjct: 19  LNFVRNLVMNLVFILLVLVCAGIWMHISNANQSQHSTRGALLLDITGVIVDKPSTSNRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               ++++ I +   D + T +++ L    G+     + I +A+
Sbjct: 79  VIGRQLFGATSDRLQENSLFDIVDTIRQAKDDRNITGIVLDLKDFAGADQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  + +  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVIAIGDSYSQGQYYLASFANKIWLSPQGTVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           +    +    K+   PF   +++P A +     +   +  ++  V+ +R I   +     
Sbjct: 199 TTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLTTVASNRQITPAQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L      T   A    L+D +G   E+ +SL          K
Sbjct: 259 QGVLDGLRKVDGDTAKYALDNKLVDALGTSAEIEKSLSKQFGWSKEDK 306


>gi|27228584|ref|NP_758634.1| putative peptidase [Pseudomonas resinovorans]
 gi|219857006|ref|YP_002474038.1| probable peptidase [Pseudomonas sp. CA10]
          Length = 349

 Score =  137 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 132/296 (44%), Gaps = 24/296 (8%)

Query: 6   KKIKTRY----VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIER 56
           ++ K  +    + + +    V   +    V  + P  A+I +RG I D +E     L   
Sbjct: 61  RRWKNFFRLATLGIVVTAFVVGGRADLDGVGADVPVTAKIKVRGVIADGEEASAENLKRS 120

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYL 113
           + +   +++  A+I+ ++SPGGS      ++  ++++        V   + ++ AS GY 
Sbjct: 121 LGKAFENENTKAVILEINSPGGSPVQAGHVYDEVRRLRALHPDTKVYAVITDLGASGGYY 180

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           I+ A++ I A + SLVGSIGV          + KLGV  ++  S   KA    F   NP+
Sbjct: 181 IASAADEIFADKASLVGSIGVTAASFGYVELMQKLGVERRAYTSGEHKAFLDQFQPQNPE 240

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
             +  + V+ ++++ F+R V   R       +   L  G IWTG +A  +GL+D +G  +
Sbjct: 241 ERKFWEGVLKTTHNQFIRSVEAGRGDRLKAKENPDLYSGLIWTGEQAVGLGLVDRLGDSD 300

Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
            V + +        + KI D+   +N        +  S  + D + L  +    GL
Sbjct: 301 YVAREVVG------VSKIVDFTRKQNPLDRFASKIGAS--VADQLSL--RLGFDGL 346


>gi|315585821|gb|ADU40202.1| signal peptide peptidase SppA [Helicobacter pylori 35A]
          Length = 292

 Score =  137 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 127/256 (49%), Gaps = 4/256 (1%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESAPSAPPNLAKLYLNGAIFSTEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P   + +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++  +A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQNRLMEL 252

Query: 241 GVDQSIRKIKDWNPPK 256
              +    ++     +
Sbjct: 253 SKVKKAYWLEKSPMER 268


>gi|295398025|ref|ZP_06808081.1| U7 family peptidase [Aerococcus viridans ATCC 11563]
 gi|294973783|gb|EFG49554.1| U7 family peptidase [Aerococcus viridans ATCC 11563]
          Length = 362

 Score =  137 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 124/257 (48%), Gaps = 14/257 (5%)

Query: 30  HVEDNSPHVARIAIRGQIEDS------------QELIERIERISRDDSATALIVSLSSPG 77
              D +  VA + I G I D+            Q +++ IE I  +D+  AL+++++SPG
Sbjct: 71  ETGDTNRQVAVLEIDGTIADNSGSGAFSEGMDYQGILDAIEGIKENDNIQALLLTVNSPG 130

Query: 78  GSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           G  Y    ++ A+  +K     P+   + +MAAS GY+IS   + I     +  GSIGV+
Sbjct: 131 GGVYESTELYNALLDLKESREIPIYVSMGQMAASGGYMISMVGDQIYTDSETTTGSIGVI 190

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
            Q P    F+++ G+++ + KS  +K   S F   + +   ++   +   Y+ FV +V+ 
Sbjct: 191 MQVPNFSGFMEEHGLAMDTYKSGALKDMGSSFRGASDEEKNVLNSFIQEKYNRFVEIVAN 250

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
            R +  D    L+DGRI++G++A + GL D +G +E+   +L A    ++   +      
Sbjct: 251 GRGMSTDDVKKLADGRIYSGSQAVENGLADQIGYEEDALAALRADNNLETATVVDYSPTS 310

Query: 256 KNYWFCDLKNLSISSLL 272
              W  D  +L     L
Sbjct: 311 ATSWLTDFMSLLAEKNL 327


>gi|317488446|ref|ZP_07946999.1| signal peptide peptidase SppA [Eggerthella sp. 1_3_56FAA]
 gi|316912490|gb|EFV34046.1| signal peptide peptidase SppA [Eggerthella sp. 1_3_56FAA]
          Length = 369

 Score =  137 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/264 (24%), Positives = 116/264 (43%), Gaps = 8/264 (3%)

Query: 34  NSPHVARIAIRGQI------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
               V  I I G I         + L  +++R  ++    A+++ ++S GG+A AGE + 
Sbjct: 105 TGDAVGVIDIDGTIQYDNTTSSPEGLKAQLDRAEKNSHIKAVVLRVNSGGGTATAGEEMA 164

Query: 88  RAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
             ++    R  KPV+     + ASA Y IS  ++ I  A+T+ +G+IG + Q   +   +
Sbjct: 165 DYVRGFSERTGKPVVVSSASVNASAAYEISSQADYIYTAKTTAIGAIGTVMQVTDLSGLM 224

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           +KLG+S+ +V S+  K        +  +     QD VD     F++ V+E R++P +   
Sbjct: 225 EKLGISVDNVTSADSKDSSYGTRPLTEEERAYYQDQVDQINETFIQTVAEGRDMPVEDVR 284

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L+ G  +TG  A + GL D +G +++       L        +   NP  +        
Sbjct: 285 ALATGLTFTGMTAVENGLADEIGTKDDAVAKAAELANIAHYTTVTLKNPTSSLSSLLDLM 344

Query: 266 LSISSLLEDTIPLMKQTKVQGLWA 289
              +   +D    +K+    G  A
Sbjct: 345 SKSNVSTDDIARALKELDTDGSIA 368


>gi|282897594|ref|ZP_06305594.1| Peptidase S49, protease IV [Raphidiopsis brookii D9]
 gi|281197517|gb|EFA72413.1| Peptidase S49, protease IV [Raphidiopsis brookii D9]
          Length = 607

 Score =  137 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/260 (25%), Positives = 120/260 (46%), Gaps = 9/260 (3%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSL 73
           V  S     +++   +A +   G+I D +              + +I +D    ++++ +
Sbjct: 302 VQASEIEEQQNSQNKIAVVYAEGEIVDGEGESSQIGGDRYARILRKIRQDQDIKSVVLRV 361

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           +SPGGSA A E I R IQ  K  KPVI  + ++AAS GY I+  S+ I A   +L GSIG
Sbjct: 362 NSPGGSATASEIIEREIQLTKQVKPVIVSMGDIAASGGYWIASNSDHIFAEPGTLTGSIG 421

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V       +   +  G++  +VK+S      +     +P+ + + Q  V+  Y+ F+  V
Sbjct: 422 VFGVLLNGQKLANNNGITWDTVKTSEFADSQTVSRPKSPQELAIYQRSVNRIYNMFINKV 481

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
            + R +P  K   ++ GR+W+GA AK++GL+D +GG     +            +++++ 
Sbjct: 482 VQGRKLPETKVGEIAQGRVWSGATAKEIGLVDEIGGLNMAIEYAAKKAKLGKDWQVEEYP 541

Query: 254 PPKNYWFCDLKNLSISSLLE 273
                           +++ 
Sbjct: 542 EVTTLGERFFGRKLEETIIG 561



 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 95/243 (39%), Gaps = 7/243 (2%)

Query: 51  QELIERIERISRDDSATALIVSLSSPG----GSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           ++LI  +E+ + D     + +++S           +   I +A++K +     I      
Sbjct: 87  RQLIGALEQAAEDQRIVGIYINVSESSKVSSLGYASLREIRQALEKFRASGKKIIAYGVG 146

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            +   Y +S  +N I      ++   G+  Q  ++   L K G+ ++ V+    K    P
Sbjct: 147 WSEREYYLSSVANKIFLNPVGMIEINGLSSQPIFLTGALQKYGIGVQVVRVGKFKGAVEP 206

Query: 167 F--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL-SDGRIWTGAEAKKVGL 223
               +++P+  +  Q ++D  +  +   V +SR I  +    + ++  +    +AK  GL
Sbjct: 207 LVLDKLSPENREQTQQLLDDLWGEWRNSVGKSRKISPEILQEIANNQGVLEAKDAKDNGL 266

Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
           ID V   ++V   L  +G   +  K     P  +Y          +S  +  +   +   
Sbjct: 267 IDEVAYTDQVVADLKTIGTSDNDGKSFRQIPIGDYVQASEIEEQQNSQNKIAVVYAEGEI 326

Query: 284 VQG 286
           V G
Sbjct: 327 VDG 329


>gi|261840109|gb|ACX99874.1| protease IV, 36K short form [Helicobacter pylori 52]
          Length = 292

 Score =  137 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 128/256 (50%), Gaps = 4/256 (1%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS    V    P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESVPSEPPNLAKLYLNGAIFSTEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P   + +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++  +A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQNRLMEL 252

Query: 241 GVDQSIRKIKDWNPPK 256
              +    ++     +
Sbjct: 253 SKVKKAYWLEKSPMER 268


>gi|116873014|ref|YP_849795.1| protease/peptidase protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741892|emb|CAK21016.1| protease/peptidase protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 338

 Score =  137 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/274 (25%), Positives = 134/274 (48%), Gaps = 19/274 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76
            +     +A +++ G I+D+ E               ++++E++  D+S   +++ ++SP
Sbjct: 57  EDAGPNKIAVLSVDGTIQDTGETSSIFGSEGYNHSFFMDQLEQVRDDESIKGVLLYVNSP 116

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG       I   I +++  +  P    +  MAAS GY IS  ++ I A++ +L GS+GV
Sbjct: 117 GGGVMESAQIRDKILQIQKERSIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 176

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           + Q       + KLG+S  ++KS   K   S    +  +  ++MQ ++D SY+ FV++V+
Sbjct: 177 IMQGYDYSELMKKLGISDNTIKSGAHKDIMSATRPMTEEEKKIMQSMIDDSYNEFVKVVA 236

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
             R++  ++   ++DGRI+ G +AK+ GLID  G QE+  ++L       +   I+   P
Sbjct: 237 SGRDMSEEQVRKIADGRIYDGRQAKENGLIDAFGYQEDALEALKKEKKLSNASVIQYDEP 296

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                F  L + +   +      + +  K+ G  
Sbjct: 297 TG---FSSLFSATAQKITGQNTDITQLIKLTGTL 327


>gi|308062696|gb|ADO04584.1| protease IV (PspA) [Helicobacter pylori Cuz20]
          Length = 292

 Score =  137 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 126/256 (49%), Gaps = 4/256 (1%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESTPSEPPNLAKLYLNGAIFSAEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     +N 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQANE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P   + +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++   A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQNRLMEL 252

Query: 241 GVDQSIRKIKDWNPPK 256
              +    ++     +
Sbjct: 253 SKVKKAYWLEKSPMER 268


>gi|108563786|ref|YP_628102.1| signal peptide protease IV [Helicobacter pylori HPAG1]
 gi|107837559|gb|ABF85428.1| signal peptide protease IV [Helicobacter pylori HPAG1]
          Length = 292

 Score =  137 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 133/277 (48%), Gaps = 7/277 (2%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  + +  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESAPSAPPNLAKLYLNGAIFSTDDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P   + +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++  +A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQNRLMEL 252

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
              +    ++     +   F +    S S+++     
Sbjct: 253 SKVKKAYWLEKSPMER---FIEKATQSASNIITQAFG 286


>gi|16331410|ref|NP_442138.1| protease IV [Synechocystis sp. PCC 6803]
 gi|2499885|sp|Q55682|Y021_SYNY3 RecName: Full=Putative protease slr0021
 gi|1001581|dbj|BAA10208.1| protease IV [Synechocystis sp. PCC 6803]
          Length = 277

 Score =  137 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 69/256 (26%), Positives = 125/256 (48%), Gaps = 4/256 (1%)

Query: 31  VEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
                  +ARI + G I     + +++ ++ +       AL+V + SPGG+    + I+ 
Sbjct: 6   KTSTRKKIARIEVTGAIASGTRKAVLKALKTVEE-KKYPALLVRIDSPGGTVVDSQEIYT 64

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
            ++++  +  V+     ++AS G  I+     I+A   ++ GSIGV+ +   ++  L+K+
Sbjct: 65  KLKQLSEKIKVVASFGNISASGGVYIAMGCPHIMANSGTITGSIGVILRGNNLERLLEKV 124

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           GVS K +KS P K   S   E+ P+   ++Q ++D SY  FV  V+  RN+  +K    +
Sbjct: 125 GVSFKVIKSGPYKDILSFDRELLPEEQSILQALIDDSYGQFVSTVAAGRNLAVEKVKEFA 184

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLKNLS 267
           DGRI+TG +A ++GL+D +G +E+  Q    L   D    ++     PK          S
Sbjct: 185 DGRIFTGQQALELGLVDRLGTEEDARQWAATLAGLDPDKVELDTIEDPKPLVRRLTGGDS 244

Query: 268 ISSLLEDTIPLMKQTK 283
               + D + L +  K
Sbjct: 245 QLQTMADNLGLTESLK 260


>gi|193212213|ref|YP_001998166.1| signal peptide peptidase SppA, 67K type [Chlorobaculum parvum NCIB
           8327]
 gi|193085690|gb|ACF10966.1| signal peptide peptidase SppA, 67K type [Chlorobaculum parvum NCIB
           8327]
          Length = 578

 Score =  137 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/302 (20%), Positives = 121/302 (40%), Gaps = 14/302 (4%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------- 51
            K+    +  L +   + +  +           +A I I G I                 
Sbjct: 248 RKRFGKPFDELVVNAGSYLSSTGDLEPHGTGNRIAVITINGLIVGDSIAGMGDDEEIDVA 307

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
            +   ++    D    A+++ + SPGG A A  ++   +++   +KP++  +   AAS G
Sbjct: 308 SVRRAVDAALDDSKVKAIVLRIDSPGGEALAASSMLELLEEAAQKKPLVASMSGSAASGG 367

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y+++ A+N I A   ++ GSIGV    P     L+K G+  + +         +PF   +
Sbjct: 368 YMVALAANKIYAQPLTVTGSIGVFALKPDFSGLLEKTGIHREVLTRGRFADAYTPFKPFD 427

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
             A +   +     Y  F   V++SR++  ++   ++ GR+W+G  A +VGL+D +GG  
Sbjct: 428 DAAFRKFVETTGHIYEDFTGKVAKSRHLTAEQVEAVAGGRVWSGKRAVEVGLVDEIGGLN 487

Query: 232 EVWQSLYALGVDQSIRKIKD-WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
           +  Q    L   +   K +  + P +  W     +      + D    +    +  L  V
Sbjct: 488 DAVQEASRLAKLKKGTKPEMLYLPARKTWIERFFDGDAVQAVADMSDHLATQSLARLLPV 547

Query: 291 WN 292
             
Sbjct: 548 SQ 549



 Score = 88.5 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 106/260 (40%), Gaps = 21/260 (8%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE------------------DSQELI 54
           V+L ++ +  V+ + S   +     V R+ ++GQIE                    + L+
Sbjct: 2   VVLFVLLIGGVWLASSWSDKLPERFVLRVPVKGQIEERSPDSGLFSFGQRAEPLSLEALM 61

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114
             ++R   D    ++++ +     S    + +  +I  ++     +T +    A   YL+
Sbjct: 62  TILDRAQSDKRVESVLLDIDGLSTSTAKIQELSSSIDALRKSGKKVTALLRTPADKDYLL 121

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172
           + A + I+  + S +   G   +  +    L KLG+  ++ +    K+   P+  +  +P
Sbjct: 122 AVACDSIIVQKNSWMQLDGFKAELFFFAEPLKKLGIGFQAAQWKKYKSAIEPYTRNSPSP 181

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGGQE 231
           +++Q +  ++D S+  ++  V+  R+I  D    + D   + T  +A +  LID V    
Sbjct: 182 ESLQELNSLLDDSWANYLDQVARRRHIGRDAFREVIDSLAVLTPEQALERKLIDRVLSIR 241

Query: 232 EVWQSLYALGVDQSIRKIKD 251
           ++ +             + +
Sbjct: 242 QLEKEYRKRFGKPFDELVVN 261


>gi|221068706|ref|ZP_03544811.1| peptidase S49 [Comamonas testosteroni KF-1]
 gi|220713729|gb|EED69097.1| peptidase S49 [Comamonas testosteroni KF-1]
          Length = 348

 Score =  137 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 116/264 (43%), Gaps = 7/264 (2%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISRDDSATALIVSLSSPGG 78
           +F  ++     SPH A + I+G+I    +     ++  +     D  + A+++ ++SPGG
Sbjct: 85  FFKDTATKTSTSPHTAVVEIKGEIASGADASAEFVVAAMRSAFEDSGSRAVVLLINSPGG 144

Query: 79  SAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           S      I   + ++K +  KP+   V E  ASA Y I+ A++ I   + S+VGSIGVL 
Sbjct: 145 SPVQAGIINDEMTRLKAKYNKPLYAVVEESCASAAYYIAAAADEIFVDKASIVGSIGVLM 204

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                   +DK+GV  + + +   K    PFS ++ +  +    +++  +  F+ +V   
Sbjct: 205 DGFGFTGVMDKVGVERRLLTAGENKGFLDPFSPMSSQQKEFALQMLEQIHQQFIGVVKAG 264

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R     ++  +  G  WTG +A ++GL D +G  + V + +          +  +     
Sbjct: 265 RGDRLHESPEMFSGLFWTGQQAVELGLADKLGSLDYVAREVVKAEEVIDYTRRDNVAERL 324

Query: 257 NYWFCDLKNLSISSLLEDTIPLMK 280
              F           +   +P ++
Sbjct: 325 AKRFGAAIGEGSVKAMRGLMPSIR 348


>gi|307130936|ref|YP_003882952.1| protease IV (signal peptide peptidase) [Dickeya dadantii 3937]
 gi|306528465|gb|ADM98395.1| protease IV (signal peptide peptidase) [Dickeya dadantii 3937]
          Length = 616

 Score =  137 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 70/280 (25%), Positives = 121/280 (43%), Gaps = 14/280 (5%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALI 70
            T +Y    +    N+  +A +   G I D               +I     D    A++
Sbjct: 308 FTSIYDYAPTPPAANANEIAVVFASGTIVDGKETPGYVGGDTTAAQIRDARLDPKVKAIV 367

Query: 71  VSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + ++SPGGS  A E I   +    +  KPV+  +  MAAS GY IS  +N I+A+ ++L 
Sbjct: 368 LRVNSPGGSVTASELIRSELAAARQAGKPVVVSMGGMAASGGYWISTPANAIIASPSTLT 427

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIG+       +  LD +GV    V +SP+ A     +     +  +MQ  ++  Y  F
Sbjct: 428 GSIGIFGVVTTFENSLDSIGVHTDGVATSPLAALSQTKALPTEASQ-LMQLNIERGYQNF 486

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           + LV+ESR     +   ++ G +W G++AK  GL+D +G  ++  +    L       ++
Sbjct: 487 ISLVAESRKKTPQEVDEIAQGHVWVGSDAKTNGLVDQLGDFDDAVKKAAELAKL-EHYQL 545

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
             ++   +    D     + S +   +P   Q  V    A
Sbjct: 546 SWYSGEPDLL--DAMFNQVRSSVYAMLPSALQAMVPAPVA 583



 Score = 93.1 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 104/298 (34%), Gaps = 44/298 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + F+ + I   +++  ++    VY  + +   +       + + G + D           
Sbjct: 19  LNFIREFILNLFLVFLILVGIGVYSQFKTPQAEPVRGALLLDLTGVVVDKPSVNNKLRQF 78

Query: 52  ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92
                             ++++ I +   D + T +++ LS    +     + I +A+++
Sbjct: 79  GREFFGVSGSRHQENALFDIVDSIRQAKDDSNITGMVMDLSDFVSADQPSLQYIGKALRE 138

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            ++    I  V +      Y ++  +N I       +   G      Y K  LDKL V+ 
Sbjct: 139 FRDAGKPIFAVGDNFNQTQYYLASFANKIYLTPQGNIDLHGFATNNLYYKTLLDKLKVTT 198

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT----LV 206
              +    K+   PF   +++P A +     + + +  ++  V+ +R I   +       
Sbjct: 199 HIFRVGTYKSAVEPFIRDDMSPAAREADSRWISTLWQHYLDTVAANRQITPQQLFPGAEN 258

Query: 207 LSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYA------LGVDQSIRKIKDWNP 254
           L  G       T   A +  L+D V  +  + QS            + +   I D+ P
Sbjct: 259 LLAGLRALNGDTARYALENKLVDEVASRSVIEQSFIKAFGWDAKNKNFNFTSIYDYAP 316


>gi|218888246|ref|YP_002437567.1| signal peptide peptidase SppA, 36K type [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218759200|gb|ACL10099.1| signal peptide peptidase SppA, 36K type [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 335

 Score =  137 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 113/289 (39%), Gaps = 20/289 (6%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIV 71
           F   +           I + G I++              QE++ ++   + D    A+IV
Sbjct: 43  FGEDTVFGQGRNKAVLINVNGVIDNRPKSGLFRERPGMVQEVVAQLRLAAEDPDVKAVIV 102

Query: 72  SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG--YLISCASNIIVAAETSLV 129
           ++ SPGG   A + ++  + + + R         M  +A   Y  + A++ IVA  +++ 
Sbjct: 103 AIDSPGGGVTASDVLYHELMRHRERTGQKVVALMMDTAASGGYYTALAADRIVAHPSTVT 162

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+F  P V   +DK+GV     KS   K   SPF E   +   + Q ++      F
Sbjct: 163 GSIGVIFLRPEVAGLMDKIGVRAVVSKSGEHKDMGSPFREGTDEERALFQSIIADMNGRF 222

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
             LV E R   +      +D RI T  +A   GL+D +G  E+      +L     +R +
Sbjct: 223 QGLVRERRPASHGHEAAFADARILTARQALAAGLVDRIGYFEDALAETASLTGTSDLRVV 282

Query: 250 KDWNPPKNYWFCDLK-----NLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
                P                   +L++  +P M      G   +W P
Sbjct: 283 TYRREPLPGATEYATATTPAGSGRMALIDLGLPGMDAASRAGFHYLWLP 331


>gi|207108687|ref|ZP_03242849.1| signal peptide protease IV [Helicobacter pylori HPKX_438_CA4C1]
          Length = 292

 Score =  137 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 134/277 (48%), Gaps = 7/277 (2%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+      L+ + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKS----FMLLLIVLVFFSAKESTPSAPPNLAKLYLNGAIFSAEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P   + +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++  +A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQNRLMEL 252

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
              +    ++     +   F +    S ++++   + 
Sbjct: 253 SKVKKAYWLEKSPMER---FIEKATQSATNIITQALG 286


>gi|295107483|emb|CBL05026.1| signal peptide peptidase SppA, 36K type [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 356

 Score =  137 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 125/283 (44%), Gaps = 8/283 (2%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATA 68
              +       + S      S  V  I I G I+        + L  +++  + +    A
Sbjct: 73  FGTLGALGSTATTSDVDYLTSDAVGVIDIDGTIQYDGTTCSPEGLKAQLDVAAENKHIKA 132

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAET 126
           +++ ++S GG+A AGE +   +++      KPV+     M ASA Y IS  ++ I  A+T
Sbjct: 133 VVLRVNSGGGTATAGEEMAAYVREFSESSGKPVVVSSASMNASAAYEISSQADFIYTAKT 192

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           + +G+IG   Q   +   LDKLG+SI++V SS  K        +  +     Q++V+   
Sbjct: 193 TAIGAIGTALQVTDLSGLLDKLGISIENVTSSDSKDSSYGTRPLTEEERAYYQNMVNQIN 252

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
             F++ V+E R++  ++   L+ G  +TG EA + GL D +G +E+       L    + 
Sbjct: 253 ETFIQTVAEGRDMTVEEVRALATGLTFTGMEAVENGLADEIGTREDAVAKAAELANTTAY 312

Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           + +K  NP  +               +D    +K+ +  G  A
Sbjct: 313 KTVKLDNPSSSLSDLLDLMSESRLSADDLAQALKELENDGSLA 355


>gi|257790843|ref|YP_003181449.1| signal peptide peptidase SppA, 36K type [Eggerthella lenta DSM
           2243]
 gi|325831972|ref|ZP_08165069.1| signal peptide peptidase SppA, 36K type [Eggerthella sp. HGA1]
 gi|257474740|gb|ACV55060.1| signal peptide peptidase SppA, 36K type [Eggerthella lenta DSM
           2243]
 gi|325486293|gb|EGC88745.1| signal peptide peptidase SppA, 36K type [Eggerthella sp. HGA1]
          Length = 350

 Score =  137 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 64/264 (24%), Positives = 116/264 (43%), Gaps = 8/264 (3%)

Query: 34  NSPHVARIAIRGQI------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
               V  I I G I         + L  +++R  ++    A+++ ++S GG+A AGE + 
Sbjct: 86  TGDAVGVIDIDGTIQYDNTTSSPEGLKAQLDRAEKNSHIKAVVLRVNSGGGTATAGEEMA 145

Query: 88  RAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
             ++    R  KPV+     + ASA Y IS  ++ I  A+T+ +G+IG + Q   +   +
Sbjct: 146 DYVRGFSERTGKPVVVSSASVNASAAYEISSQADYIYTAKTTAIGAIGTVMQVTDLSGLM 205

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           +KLG+S+ +V S+  K        +  +     QD VD     F++ V+E R++P +   
Sbjct: 206 EKLGISVDNVTSADSKDSSYGTRPLTEEERAYYQDQVDQINETFIQTVAEGRDMPVEDVR 265

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L+ G  +TG  A + GL D +G +++       L        +   NP  +        
Sbjct: 266 ALATGLTFTGMTAVENGLADEIGTKDDAVAKAAELANIAHYTTVTLKNPTSSLSSLLDLM 325

Query: 266 LSISSLLEDTIPLMKQTKVQGLWA 289
              +   +D    +K+    G  A
Sbjct: 326 SKSNVSTDDIARALKELDTDGSIA 349


>gi|264677100|ref|YP_003277006.1| peptidase S49 [Comamonas testosteroni CNB-2]
 gi|262207612|gb|ACY31710.1| peptidase S49 [Comamonas testosteroni CNB-2]
          Length = 302

 Score =  137 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 61/268 (22%), Positives = 118/268 (44%), Gaps = 7/268 (2%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISRDDSATALIVSLS 74
           +  V+F  ++     SPH A + I+G+I    +     ++  +     D  + A+++ ++
Sbjct: 35  MWAVFFKDTATKTSTSPHTAVVEIKGEIASGADASAEFVVAAMRSAFEDSGSRAVVLLIN 94

Query: 75  SPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           SPGGS      I   + ++K +  KP+   V E  ASA Y I+ A++ I   + S+VGSI
Sbjct: 95  SPGGSPVQAGIINDEMTRLKAKYNKPLYAVVEESCASAAYYIAAAADEIFVDKASIVGSI 154

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GVL         +DK+GV  + + +   K    PFS ++ +  +    +++  +  F+ +
Sbjct: 155 GVLMDGFGFTGVMDKVGVERRLLTAGENKGFLDPFSPMSAQQKEFALQMLEQIHQQFIGV 214

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           V   R     +T  +  G  WTG +A ++GL D +G  + V + +          +  + 
Sbjct: 215 VKAGRGDRLHETPEMFSGLFWTGQQAVELGLADKLGSLDYVAREVVKAEEVIDYTRRDNV 274

Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMK 280
                  F           +   +P ++
Sbjct: 275 AERLAKRFGAAIGEGSVKAMRGLVPSIR 302


>gi|261838709|gb|ACX98475.1| signal peptide protease IV [Helicobacter pylori 51]
          Length = 292

 Score =  137 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 125/255 (49%), Gaps = 4/255 (1%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESTPSAPPNLAKLYLNGAIFSTEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P     +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKDFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++  +A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQNRLMEL 252

Query: 241 GVDQSIRKIKDWNPP 255
              +    ++     
Sbjct: 253 SKVKKAYWLEKSPME 267


>gi|126642643|ref|YP_001085627.1| putative protease; putative signal peptide peptidase sppA
           [Acinetobacter baumannii ATCC 17978]
          Length = 338

 Score =  137 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 132/297 (44%), Gaps = 18/297 (6%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQI-------EDSQELI 54
             K +   Y++  +V +     +    S    +S H+A + I G I        +S++  
Sbjct: 45  FFKTLTFIYLLFIIVLMGKGCSTTKDGSTASSSSAHLAVVDIIGTIDASSNQAVNSEDTN 104

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAG 111
           + ++R     ++ A+ ++++SPGGS    + I++ I+ +      K V   + +M AS  
Sbjct: 105 KALKRAFEASNSKAIALNINSPGGSPVQSDEIWQEIRYLKKEHPDKKVYAVIGDMGASGA 164

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I+   +SLVGSIGV+     +     KLG+  +++ +   K   S    +N
Sbjct: 165 YYIASAADEIIVNPSSLVGSIGVIMPNYGITGLAQKLGIEDRTLTAGTNKDILSMTKPIN 224

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
           P   Q +Q V+D+ +  F+  V E R          +  G  WTG +A ++G+ D  G  
Sbjct: 225 PVQRQHIQSVLDNVHTHFINAVKEGRGKRLKSNDPAIFSGLFWTGEQAIQLGVADRSGNI 284

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYW--FCDLKNLSISSLLEDTIPLMKQTKVQ 285
             + + L    +D  +    + NP ++            +S  + + +   +  K+Q
Sbjct: 285 TSLMRELK---LDNKVDYTIERNPLQSILGRMGSEMGKGLSESVAERLQTSQDAKLQ 338


>gi|332674201|gb|AEE71018.1| signal peptide peptidase SppA [Helicobacter pylori 83]
          Length = 292

 Score =  137 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 127/256 (49%), Gaps = 4/256 (1%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESAPSAPPNLAKLYLNGAIFSTEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P   + +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++  +A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQNRLMEL 252

Query: 241 GVDQSIRKIKDWNPPK 256
              +    ++     +
Sbjct: 253 SKVKKAYWLEKSPMER 268


>gi|308185198|ref|YP_003929331.1| Signal peptide protease IV (Protease IV) (Endopeptidase IV)
           [Helicobacter pylori SJM180]
 gi|308061118|gb|ADO03014.1| Signal peptide protease IV (Protease IV) (Endopeptidase IV)
           [Helicobacter pylori SJM180]
          Length = 292

 Score =  137 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 127/256 (49%), Gaps = 4/256 (1%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS       N P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESAPSNPPNLAKLYLNGAIFSTEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P   + +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++   A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQNRLMEL 252

Query: 241 GVDQSIRKIKDWNPPK 256
              +    ++     +
Sbjct: 253 SKVKKAYWLEKSPMER 268


>gi|297380616|gb|ADI35503.1| signal peptide peptidase SppA, 36K type [Helicobacter pylori v225d]
          Length = 292

 Score =  137 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 126/256 (49%), Gaps = 4/256 (1%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESTPSAPPNLAKLYLNGAIFSAEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P   + +Q+
Sbjct: 133 VYASKASLIGSIGVIFSSANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++   A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQNRLMEL 252

Query: 241 GVDQSIRKIKDWNPPK 256
              +    ++     +
Sbjct: 253 SKVKKAYWLEKSPMER 268


>gi|317178138|dbj|BAJ55927.1| protease IV [Helicobacter pylori F16]
          Length = 292

 Score =  137 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 126/256 (49%), Gaps = 4/256 (1%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  +++  + ++RI
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESAPSAPPNLAKLYLNGAIFSTEDFDKEVDRI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P     +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKDFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++  +A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQDRLMEL 252

Query: 241 GVDQSIRKIKDWNPPK 256
              +    ++     +
Sbjct: 253 SKVKKAYWLEKSPMER 268


>gi|224418348|ref|ZP_03656354.1| protease IV (PspA) [Helicobacter canadensis MIT 98-5491]
 gi|313141879|ref|ZP_07804072.1| protease IV [Helicobacter canadensis MIT 98-5491]
 gi|313130910|gb|EFR48527.1| protease IV [Helicobacter canadensis MIT 98-5491]
          Length = 291

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 127/255 (49%), Gaps = 4/255 (1%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F++K  K    +L +V +    F  SS    +  +VARI ++G I  S   +E + ++
Sbjct: 11  LDFIMKYFKALVFLLIVVLI----FMPSSSENSSLANVARIDLKGMIIQSDSFLEELSKL 66

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
             + +   +++ + SPGG+      I  A+++++++KP++       AS  YL    ++ 
Sbjct: 67  ENNPNIKGVLLVIDSPGGTIPPSVEISEAVKRMRSKKPIVAYAQGSMASGSYLAGVWADR 126

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           I+A + +LVGSIGV+     V    +KLG+  + +K+   K   +     N    +M++ 
Sbjct: 127 IIANKGALVGSIGVILNGVDVSELAEKLGIKTQILKAGIYKEAGTFMRPWNQAEEEMLKG 186

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           ++   Y  FV  V  +RN+   K    + GR+++ + A K+GL+D +    E  ++L+ L
Sbjct: 187 LIKEQYEMFVSEVVAARNLEITKEGEFAQGRVFSASNALKLGLVDSISSIYEAQKTLFEL 246

Query: 241 GVDQSIRKIKDWNPP 255
              Q+   ++     
Sbjct: 247 AKIQNPIWLQKSEME 261


>gi|217973227|ref|YP_002357978.1| signal peptide peptidase SppA [Shewanella baltica OS223]
 gi|217498362|gb|ACK46555.1| signal peptide peptidase SppA, 67K type [Shewanella baltica OS223]
          Length = 615

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/270 (24%), Positives = 121/270 (44%), Gaps = 14/270 (5%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                V  I   G I            +   E + +   D    AL++ + SPGGSA+A 
Sbjct: 322 VEQDSVGIIVASGTILNGTQPAGQIGGESTAELLRKARFDKHVKALVLRVDSPGGSAFAS 381

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + +  +K   KPV+  +  +AAS GY IS +++ I A  T+L GSIG+       +
Sbjct: 382 EQIRQELLALKAAGKPVVVSMGSLAASGGYWISASADYIFATPTTLTGSIGIFGMITTFE 441

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L  +GV    V +S         + ++P+   ++Q  ++  Y  F+ LV++ R +  +
Sbjct: 442 DSLASIGVHTDGVSTSEWAGLSVTRT-LSPQVEAIIQRHIERGYLDFISLVAKERKMTIE 500

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFC 261
           +   ++ GR+W+G +A ++GL+D +G  +E       L        ++ +        F 
Sbjct: 501 QVDKIAQGRVWSGKKALELGLVDELGDLDEAIAKAAKLADMTLFDTRVIEQELTPEQRFM 560

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
                S+SS L  ++   + + ++ +   W
Sbjct: 561 QQMFASVSSYLPASLS--QSSMLEQMLQQW 588



 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 89/273 (32%), Gaps = 36/273 (13%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51
           +K+    +   ++   ++    S  ++        + + G I D +              
Sbjct: 23  RKLILNLIFFGILAAIIISIGSSEDIQVEDNSALVLNLAGSIVDQKQQVDPLEAAFKQGQ 82

Query: 52  -----------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRKPV 99
                      +++  I+  ++D   + L++             ++I  A+ + K     
Sbjct: 83  NANADGEILLADVLYVIDNAAQDQRISTLVLDLADLKRAGISKLQSIGDALNRFKESGKK 142

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
           +  +        Y ++  ++ I       V   G+     Y K  LDKL V     +   
Sbjct: 143 VVAIGNYYEQNQYFLASFADTIYLNPQGGVSLDGLSMYNQYFKSALDKLKVKAHIFRVGT 202

Query: 160 MKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSD 209
            K+   P+   +++  A +    ++   +  + + V+ +RNI  +            L  
Sbjct: 203 FKSAVEPYMRDDMSDAAREASSALLADVWQSYTQTVAGNRNIEPNSLVPDATTYLAELDK 262

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
               + A A  +  +D +   E+  Q++     
Sbjct: 263 ANGDSAAMAINMKWVDSLATTEDFRQTMLETVG 295


>gi|226939994|ref|YP_002795067.1| SohB [Laribacter hongkongensis HLHK9]
 gi|226714920|gb|ACO74058.1| SohB [Laribacter hongkongensis HLHK9]
          Length = 312

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 127/287 (44%), Gaps = 22/287 (7%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNS-------PHVARIAIRGQI----EDSQELIER 56
           I  R   L+++ L  +    S     N        PH A I I G I    + ++++ + 
Sbjct: 29  IFFRLTWLAVILLVALPLFASWFGNSNDSLPAGGRPHAAVIDINGVINNENDSARKISDG 88

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAGYL 113
           ++   +D +   +I+  +SPGGS       +  I++   +    PV+  V E+ AS  Y 
Sbjct: 89  LKNAYKDPNTRGIILRANSPGGSPVLSGMAYDEIRRQKTLHPDIPVLVAVEEVCASGCYY 148

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           I+ A++ I A + S+VGSIGVL +       ++KLG+  +   S   K    PFS   P 
Sbjct: 149 IASAADKIFANQASIVGSIGVLSEGFGFTGAMEKLGIERRLATSGRDKGMGDPFSPQTPA 208

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
            V M Q+++D+ +  F+  V + R         L  GR+W G++A  +GLID +   + +
Sbjct: 209 QVSMRQELLDTIHGQFITAVRQGRGKRLKTGEDLFTGRVWVGSQAVPLGLIDGLSSVDAI 268

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPL 278
            +             + D+ P  ++         + I+  + D + +
Sbjct: 269 ARE------QLDTDNVVDFTPKDSFSSRLGKRLGMQIADGVRDGLSM 309


>gi|218245954|ref|YP_002371325.1| signal peptide peptidase SppA, 67K type [Cyanothece sp. PCC 8801]
 gi|257059002|ref|YP_003136890.1| signal peptide peptidase SppA, 67K type [Cyanothece sp. PCC 8802]
 gi|218166432|gb|ACK65169.1| signal peptide peptidase SppA, 67K type [Cyanothece sp. PCC 8801]
 gi|256589168|gb|ACV00055.1| signal peptide peptidase SppA, 67K type [Cyanothece sp. PCC 8802]
          Length = 598

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 114/245 (46%), Gaps = 9/245 (3%)

Query: 30  HVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSA 80
               +S  +A + + G I D                + +I +D++  A+++ ++SPGGSA
Sbjct: 304 PERSSSQKIAVVYLEGAIVDGLGTLQQVGGSRFANLLRQIRQDETIKAVVIRINSPGGSA 363

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
            A + I R IQ  +  KPVI  +  +AAS GY ++     I A   ++ GSIGV   +  
Sbjct: 364 TASDIILREIQLTQAEKPVIISMGNVAASGGYWVATGGQHIFAQANTVTGSIGVFGLFLN 423

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           +    +  G+S  +VK++      +      P+ + + Q  V+  Y  F+  V++SR + 
Sbjct: 424 INEIANNNGLSWDTVKTANFGDLGTATRPKTPQELAIYQGFVNQVYDLFLERVAKSRQLS 483

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
             K   ++ GRIW+G +AK +GL+D +GG               +  ++ ++   +    
Sbjct: 484 KTKVNEIAQGRIWSGEDAKTIGLVDSIGGLNAAINYAAQQAKLGTDWQLDEYPQRRGLES 543

Query: 261 CDLKN 265
             ++N
Sbjct: 544 LFIRN 548



 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 55/314 (17%), Positives = 125/314 (39%), Gaps = 29/314 (9%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------- 51
            +     +  LV L +   S ++        V    +  Q++D++               
Sbjct: 18  FLFMTIGVSGLVILLISLASLNTSPTIKDKSVLVFDLSTQVQDTEPPLTLSDVFSDEDQS 77

Query: 52  -----ELIERIERISRDDSATALIVSLSSPGGSAYAG--EAIFRAIQKVKNRKPVITEVH 104
                ++++ IE+ ++DD   A+ +  S+  G +  G    I  A+ + +     I    
Sbjct: 78  VLTLRQVLQGIEKATKDDRIQAIFLDGSTASGGSGYGTFSEIREALAQFREAGKKIIVYD 137

Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164
              +   Y +S  ++ ++      +   G+  +  +     DK G+ +++V+    K   
Sbjct: 138 VTLSEQEYYLSALADTVILNPMGQMELKGLAIEPLFWSGTFDKYGIGVQTVRVGSFKGAI 197

Query: 165 SPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL-SDGRIWTGAEAKKV 221
            PF   +++P+  Q +Q ++D  +  F+  V ++R +       L ++  I T  +A +V
Sbjct: 198 EPFTRKDLSPENRQQLQALLDDLWSNFLVTVGKNREVSPQILQRLANNQGILTAQQALEV 257

Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI---SSLLEDTIPL 278
           GL+D VG Q++    L  L    +  + K +       + ++  L +   SS  +  +  
Sbjct: 258 GLVDEVGYQDQAIAKLKELTGTTNSTE-KSFPQVTLGTYLNVPVLQVPERSSSQKIAVVY 316

Query: 279 MKQTKVQGLWAVWN 292
           ++   V GL  +  
Sbjct: 317 LEGAIVDGLGTLQQ 330


>gi|329900911|ref|ZP_08272643.1| Peptidase S49 [Oxalobacteraceae bacterium IMCC9480]
 gi|327549323|gb|EGF33895.1| Peptidase S49 [Oxalobacteraceae bacterium IMCC9480]
          Length = 313

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 120/289 (41%), Gaps = 17/289 (5%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDN--SPHVARIAIRGQI------EDSQELIERIER 59
           I  R   L+ V   +  F      +    + H A I I G I        ++ +I  + +
Sbjct: 29  IFFRLATLAAVVFGIWAFVSFGKTDTEVLTTHTALIDIDGTIESGGGSGSAESVIPALNK 88

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN---RKPVITEVHEMAASAGYLISC 116
              D +A  +I+ ++SPGGS      I   I ++     +KP+   V EM AS GY I+ 
Sbjct: 89  AYADTAAVGIILRINSPGGSPVQAGMINDEIGRLHKLYPKKPLYVVVDEMCASGGYYIAV 148

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
           A++ I   + S+VGSIGVL         +DK+GV  +   +   K    PFS  + K   
Sbjct: 149 AADKIFVNKASIVGSIGVLMDGFGFTGLMDKVGVERRLQTAGVNKGFMDPFSPQSEKQKA 208

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
             Q+++D  +  F+ +V + R     +T     G  WTG +A ++GL D  G  + V + 
Sbjct: 209 YAQEMLDEIHQQFIDVVRKGRGKRLKETPETFSGLFWTGTKAVEMGLADGFGTIDSVARD 268

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
                 +     + D+   +      LK    +        ++    +Q
Sbjct: 269 ------EFKAEDVVDYTQHEGLPERVLKKFGAAMGAGAMKSIVSGAGLQ 311


>gi|171057279|ref|YP_001789628.1| peptidase S49 [Leptothrix cholodnii SP-6]
 gi|170774724|gb|ACB32863.1| peptidase S49 [Leptothrix cholodnii SP-6]
          Length = 340

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 116/262 (44%), Gaps = 14/262 (5%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIERISRDDSATAL 69
            +LV   ++  +  +    N PH A + +RG+I       +  L+  +     D  A A+
Sbjct: 70  FALVAWGLLTQNNHASAP-NGPHTALVELRGEIAVDTEASADVLLSGLRSAFEDSGAQAV 128

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETS 127
           ++ ++SPGGS      I   I ++K +  K V   V E  AS  Y ++ A++ I   + S
Sbjct: 129 VIRINSPGGSPVQAGIIHDEILRLKAKHDKEVYAVVEESCASGAYYVAVAADSIYVDKAS 188

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           +VGSIGVL         ++KLGV  + + +   K    PFS ++       Q ++D  + 
Sbjct: 189 IVGSIGVLMDGFGFTSLMEKLGVERRMITAGSNKGMLDPFSPLSESQRAFAQSMLDQIHQ 248

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F+++V + R     +T     G  W+G EA + GL D  G  E V + +          
Sbjct: 249 QFIKVVKDGRGERLKETPETFSGLFWSGEEAVRQGLADGFGNLEFVAREIVK------AE 302

Query: 248 KIKDWNPPKNYWFCDLKNLSIS 269
           ++ D+ P +N      K    +
Sbjct: 303 EVIDYTPHENVAERLAKRFGAA 324


>gi|186681712|ref|YP_001864908.1| signal peptide peptidase SppA, 67K type [Nostoc punctiforme PCC
           73102]
 gi|186464164|gb|ACC79965.1| signal peptide peptidase SppA, 67K type [Nostoc punctiforme PCC
           73102]
          Length = 611

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 60/264 (22%), Positives = 117/264 (44%), Gaps = 9/264 (3%)

Query: 33  DNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAG 83
            +   +A +   G+I D +            +   ++ +D    A+++ ++SPGGSA A 
Sbjct: 314 SSKNQIAVVYAEGEIVDGKGDGGQVGGDRFAKIFNKLRQDKDVKAVVLRINSPGGSATAA 373

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           E + R ++  +  KPV+  + ++AAS GY I+  SN I A   ++ GSIGV       + 
Sbjct: 374 EVMQREVKLTREVKPVVVSMGDVAASGGYWIASDSNRIFAEPNTITGSIGVFGLLFNGEK 433

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
                G++  SVK+       +     +P+ + + Q  V+  Y+ F+  VS+ R +P  K
Sbjct: 434 LASDNGITWDSVKTGTYADSQTVSRPKSPQELALYQRSVNRIYNMFLNKVSQGRKLPEQK 493

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ GR+W+G  AK++GL+D +GG                  +++++    ++     
Sbjct: 494 VAEIAQGRVWSGVAAKEIGLVDEIGGLNSAIAYAVKEAKLGEDWEVQEYPRTSSFGERFF 553

Query: 264 KNLSISSLLEDTIPLMKQTKVQGL 287
              +  +     I   +      L
Sbjct: 554 GRATEEARTALGIEAAQLKPSNPL 577



 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/322 (17%), Positives = 115/322 (35%), Gaps = 43/322 (13%)

Query: 1   MEFVLKKIKTRYV--MLSLVT------------LTVVYFSWSSHVEDNSPHVARIAIRGQ 46
           M   +K+     V  +L L+             +     S  +        V    +  +
Sbjct: 1   MRNFIKQTFASLVGTLLGLIIFGGLGTTGLLLLIFAASSSKDTGPNVKDKSVLVFDLSMK 60

Query: 47  IEDSQ----------------------ELIERIERISRDDSATALIVSL--SSPGGSAYA 82
           I DS+                      +++E +E+  RD     + +    +S  G+   
Sbjct: 61  ITDSEPSSDELFQNTISGVDDERMALRKVVETLEKARRDPRIVGIYLDSTSASQAGNVGY 120

Query: 83  GE--AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                I +A+++ +     I       +   Y +S  ++ IV     ++   G+  Q  +
Sbjct: 121 ASLKEIRKALEEFRASGKKIVAYGSDWSEKEYYLSSVADSIVLNPLGMMEVNGLSSQPMF 180

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           +   L K G+ ++ V+    K    PF   +++P+  +  Q ++D  +  +   V  SR 
Sbjct: 181 LAGALQKYGIGVQVVRVGKFKGAVEPFILKKLSPENREQTQKLLDDVWGEWRTTVGASRK 240

Query: 199 IPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           I  ++   ++D   +    +AK  GL+D V   +EV   L  L       K        N
Sbjct: 241 IEPNQLQAIADSQAVLEATQAKTSGLVDRVAYPDEVVSDLKKLTNSDKDDKTFRQINLNN 300

Query: 258 YWFCDLKNLSISSLLEDTIPLM 279
           Y     K+L +    ++ I ++
Sbjct: 301 YAEVSGKSLGVERSSKNQIAVV 322


>gi|300866223|ref|ZP_07110935.1| signal peptide peptidase A [Oscillatoria sp. PCC 6506]
 gi|300335742|emb|CBN56095.1| signal peptide peptidase A [Oscillatoria sp. PCC 6506]
          Length = 272

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/264 (24%), Positives = 134/264 (50%), Gaps = 8/264 (3%)

Query: 36  PHVARIAIRGQIE--DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
             +ARI I G I     + ++E ++ +       AL++ + SPGG+    + I+ A++++
Sbjct: 11  KQIARIEINGAIAQEARKRVLEALKTVEE-RKFPALLLRIDSPGGTVGDSQEIYSALKRL 69

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           +++  ++     ++AS G  I   +  IV    ++ GSIGV+ +   ++  L+K+GVS K
Sbjct: 70  QDQVKIVASFGNISASGGVYIGMGAPHIVTNPGTITGSIGVIIRGNNIEGLLEKVGVSFK 129

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
           ++KS P K   +   E+     +++QD++D++Y  FV+ V+E+RNIP +     +DGRI+
Sbjct: 130 TIKSGPYKDILAFDRELTEPEKEILQDLIDNTYQQFVQTVAEARNIPIETVKTFADGRIF 189

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR----KIKDWNPPKNYWFCDLKNLSIS 269
           +G +A ++G++D +G +++  +    L      +     ++   P          + S  
Sbjct: 190 SGQQALELGVVDRLGTEDDARRWAAELAGLDPEKTECCTLEKPKPFLTRALGSSLDTSGL 249

Query: 270 SLLEDTIPLMKQTKVQGLWAVWNP 293
           S   + +          LW ++ P
Sbjct: 250 SSAGNWLEFELSVSGLPLW-LYRP 272


>gi|297538693|ref|YP_003674462.1| peptidase S49 [Methylotenera sp. 301]
 gi|297258040|gb|ADI29885.1| peptidase S49 [Methylotenera sp. 301]
          Length = 327

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 66/283 (23%), Positives = 118/283 (41%), Gaps = 14/283 (4%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERIS 61
             K        + L +              H A I + G I      ++   +  +    
Sbjct: 46  FFKGLMFAYLFIILFLAMGWLGGGKSSTGSHTALIEVAGVIEAGGAVNADSFMSSLHDAY 105

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAGYLISCAS 118
            D +   +I+ ++SPGGS      I   I++   +  + PV   V ++ AS GY I+ A+
Sbjct: 106 DDKNTKGIILRINSPGGSPVQAGIINDEIKRQKKLHPKIPVYAVVEDICASGGYYIAAAA 165

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I   + S+VGSIGVL         + K+GV  + + +   KA   PFS VNPK   + 
Sbjct: 166 DKIYVDKASIVGSIGVLMDGYGFTEVMKKVGVERRLLTAGENKAMLDPFSPVNPKHQALA 225

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           Q +++  +  F  +V + R     +T     G  W+G E+ K+GL D +G  + V + + 
Sbjct: 226 QAMLNEIHEQFKTVVRQGRGSRLKETPETFSGLFWSGEESIKMGLADALGSADYVARDVI 285

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
                    KI D+   +++     K +  S      + ++ +
Sbjct: 286 K------EEKIVDFTSQEDFTSRIAKRIGASMAKAVGVDVLTK 322


>gi|15612393|ref|NP_224046.1| putative protease IV [Helicobacter pylori J99]
 gi|4155951|gb|AAD06917.1| putative PROTEASE IV [Helicobacter pylori J99]
          Length = 292

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 127/256 (49%), Gaps = 4/256 (1%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESAPSEPPNLAKLYLNGAIFSTEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P   + +Q+
Sbjct: 133 VYASKASLIGSIGVIFSSANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++  +A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVDDVAKARKLNAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQDRLMEL 252

Query: 241 GVDQSIRKIKDWNPPK 256
              +    ++     +
Sbjct: 253 SKVKKAYWLEKSPMER 268


>gi|163311063|pdb|3BF0|A Chain A, Crystal Structure Of Escherichia Coli Signal Peptide
           Peptidase (Sppa), Native Crystals
 gi|163311064|pdb|3BF0|B Chain B, Crystal Structure Of Escherichia Coli Signal Peptide
           Peptidase (Sppa), Native Crystals
 gi|163311065|pdb|3BF0|C Chain C, Crystal Structure Of Escherichia Coli Signal Peptide
           Peptidase (Sppa), Native Crystals
 gi|163311066|pdb|3BF0|D Chain D, Crystal Structure Of Escherichia Coli Signal Peptide
           Peptidase (Sppa), Native Crystals
          Length = 593

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 294 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 353

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 354 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 413

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A  MMQ  +++ Y  F+ LV+++R+
Sbjct: 414 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQLMMQLSIENGYKRFITLVADARH 472

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 473 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 531

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 532 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 560



 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 11/208 (5%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASA 110
           +++  I +   D + T +++ L +  G      + I +A+++ ++    +  V E  +  
Sbjct: 74  DIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQG 133

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168
            Y ++  +N I  +   +V   G      Y K  LDKL VS    +    K+   PF   
Sbjct: 134 QYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRD 193

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKK 220
           +++P A +     +   +  ++  V+ +R IP ++           L+     T   A +
Sbjct: 194 DMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALE 253

Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRK 248
             L+D +    E+ ++L          K
Sbjct: 254 NKLVDALASSAEIEKALTKEFGWSKTDK 281


>gi|253688357|ref|YP_003017547.1| signal peptide peptidase SppA, 67K type [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754935|gb|ACT13011.1| signal peptide peptidase SppA, 67K type [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 616

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 126/285 (44%), Gaps = 17/285 (5%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDS 65
            + V++             N+  +A +   G I D               +I     D  
Sbjct: 306 FNFVSIYDYVV---KPPVQNNNQIAVVFANGAIIDGPETPGMVGGDTTAAQIRAARLDPK 362

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAA 124
             AL++ ++SPGGS  A E I   +  ++   KP++  +  MAAS GY IS  +N I+++
Sbjct: 363 VKALVLRVNSPGGSVTASELIRSELMALRLAGKPIVVSMGGMAASGGYWISTPANAIISS 422

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
            ++L GSIG+       +  L+ LGV    V +SP+       S + P+  QMMQ  ++ 
Sbjct: 423 ASTLTGSIGIFGVITTFENSLESLGVHTDGVATSPLADLSITKS-LPPEFSQMMQLSIER 481

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            Y  F+ +V+++R    ++   ++ G +W G++AK+ GL+D +G  ++  +    L    
Sbjct: 482 GYKNFIDIVAQARKKTPEQIDQIAQGHVWVGSDAKENGLVDQIGDFDDAVKKAAELAKL- 540

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
              ++  +          L  ++ S      +P+  Q+ +    A
Sbjct: 541 GQYQLNWYAEQPGLLDTMLNQVNASVY--ALLPVAVQSMLPAPVA 583



 Score = 93.5 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 101/280 (36%), Gaps = 38/280 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + F+ + I   +++  ++    +Y    +  E  +     + + G + D           
Sbjct: 19  LNFIREFILNIFLIALILVGVGIYSQVKTTPEAATKGALLVDLTGVVVDQPTVNNKLRQL 78

Query: 52  ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92
                             ++++ I +   DD+ T +++ LS   G+     + I +A+++
Sbjct: 79  GREFFGASNNRRQENSLFDIVDSIRQAKSDDNITGMVLDLSDFTGADQPSLQYIGKALRE 138

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            ++    I  V +    + Y ++  +N +       V   G      Y K  LDKL V+ 
Sbjct: 139 FRDSGKPIYAVGDSYNQSQYYLASFANTVSLTPQGSVDLHGFATNNLYFKSMLDKLKVTT 198

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
              +    K+   P+   +++P A       +++ +  ++  VS +R I   +    + G
Sbjct: 199 NIFRVGTYKSAVEPYLRDDMSPAARDADGRWINALWQQYLNTVSANRQITPQQLFPGAAG 258

Query: 211 RI--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
            I         T   A    L+D V  +    QSL     
Sbjct: 259 IIAGLQSVQGDTARYALDNKLVDEVASRSMTEQSLVKAFG 298


>gi|188528198|ref|YP_001910885.1| protease IV (PspA) [Helicobacter pylori Shi470]
 gi|188144438|gb|ACD48855.1| protease IV (PspA) [Helicobacter pylori Shi470]
          Length = 292

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 126/256 (49%), Gaps = 4/256 (1%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESAPSAPPNLAKLYLNGAIFSAEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P   + +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++   A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQNRLMEL 252

Query: 241 GVDQSIRKIKDWNPPK 256
              +    ++     +
Sbjct: 253 SKVKKAYWLEKSPMER 268


>gi|183219875|ref|YP_001837871.1| peptidase PfaP [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189910003|ref|YP_001961558.1| periplasmic serine protease [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774679|gb|ABZ92980.1| Periplasmic serine protease [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778297|gb|ABZ96595.1| Peptidase PfaP (Periplasmic flagella-associated protein;
           PF-associated peptidase) [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 321

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/256 (24%), Positives = 127/256 (49%), Gaps = 11/256 (4%)

Query: 40  RIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            + I G+I           +  ++ ++  +  D +   +++ ++SPGG+  A + IF  +
Sbjct: 53  VLPIVGEIHSGESTFDSTGADTVLRQLRELDEDTNVKGILIEINSPGGTVAASQEIFNEL 112

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
             ++  K ++  + ++AAS GY I+ AS+ I A   ++ GSIGV+   P VK  LD+ GV
Sbjct: 113 LHLRKSKKIVVSMKDVAASGGYYIAAASDYIFAENGTITGSIGVISFAPNVKGLLDRYGV 172

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
            +++ K+   K   SPF +   +   M+   +  +Y  FV  V++ RN        L++G
Sbjct: 173 GVRTYKAGKYKDMYSPFRDSTNEEDDMIGKQLQDTYRKFVEDVAKGRNKTVKSIEELAEG 232

Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270
           +I++G +A +  L+D +GG+ E  + L  L   + +  + +     + +   +++L +  
Sbjct: 233 KIYSGEDAFRNKLVDDIGGRREAHKKLSELCQYEGLIPLFEQEY--SPFERMIRSLGVKF 290

Query: 271 LLEDTIPLMKQTKVQG 286
           L E +     +  +Q 
Sbjct: 291 LGEGSQTSKIRALLQS 306


>gi|210135599|ref|YP_002302038.1| signal peptide protease IV [Helicobacter pylori P12]
 gi|210133567|gb|ACJ08558.1| signal peptide protease IV [Helicobacter pylori P12]
          Length = 292

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 126/256 (49%), Gaps = 4/256 (1%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESAPSAPPNLAKLYLNGAIFSTEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P   + +Q+
Sbjct: 133 VYASKASLIGSIGVIFSSANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++   A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQDRLMEL 252

Query: 241 GVDQSIRKIKDWNPPK 256
              +    ++     +
Sbjct: 253 SKVKKAYWLEKSPMER 268


>gi|170700222|ref|ZP_02891238.1| peptidase S49 [Burkholderia ambifaria IOP40-10]
 gi|170134855|gb|EDT03167.1| peptidase S49 [Burkholderia ambifaria IOP40-10]
          Length = 330

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 125/286 (43%), Gaps = 17/286 (5%)

Query: 7   KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           KI  R+    +  L+   ++ FS  +       H A + I G+I      +++++   ++
Sbjct: 44  KIFFRFAFLGVFLLLAFALIDFSSDAKFSAGGHHTALVTIDGEIAAGTNANAEDINTALD 103

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115
               DD A  +++ ++SPGGS      ++  I++++ +   KP+   V +M AS GY I+
Sbjct: 104 AAFDDDGAAGVVLRINSPGGSPVQAGMVYDEIRRLRTKYPDKPLYVVVTDMCASGGYYIA 163

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         + KLGV  +   S   K    PFS   PK  
Sbjct: 164 SAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVDRRLHTSGENKGFYDPFSPETPKMD 223

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q++++  +  F++ V E R     +T  +  G  WTG ++ ++GL D  G  + V +
Sbjct: 224 AHAQELLNQVHAQFIKAVKEGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDTVAR 283

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
            +           + D+   ++      +    +        L   
Sbjct: 284 DVLK------APDLVDYTVKESLTNRVARKFGAAVGGAAMKALAAG 323


>gi|317014847|gb|ADU82283.1| putative protease IV [Helicobacter pylori Gambia94/24]
          Length = 292

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 135/277 (48%), Gaps = 7/277 (2%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESAPSEPPNLAKLYLNGAIFSTEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P   + +Q+
Sbjct: 133 VYASKASLIGSIGVIFSSANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++  +A  + LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVDDVAKARKLNAKDYKDFAEGKVFSAQKALNLKLIDKISTIKQAQDRLMEL 252

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
              +    ++     +   F +    S++S++   + 
Sbjct: 253 SKVKKAYWLEKSPMER---FIEKATQSVTSIITQALG 286


>gi|271500691|ref|YP_003333716.1| signal peptide peptidase SppA, 67K type [Dickeya dadantii Ech586]
 gi|270344246|gb|ACZ77011.1| signal peptide peptidase SppA, 67K type [Dickeya dadantii Ech586]
          Length = 616

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 71/280 (25%), Positives = 123/280 (43%), Gaps = 14/280 (5%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALI 70
            T +Y   ++    +S  +A +   G I D               +I     D    A+I
Sbjct: 308 FTSIYDYTTTPPATSSNEIAVVFASGTIIDGKETPGYVGGDTTAAQIRDARLDPKVKAII 367

Query: 71  VSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + ++SPGGS  A E I   +    +  KPVI  +  MAAS GY IS  +N I+A+  +L 
Sbjct: 368 LRVNSPGGSVTASELIRSELMAARQAGKPVIVSMGGMAASGGYWISTPANTIIASPNTLT 427

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIG+       +  LD +GV    V +SP+       + + P+  Q+MQ  ++  Y  F
Sbjct: 428 GSIGIFGVVTTFENALDSIGVHTDGVATSPLADLSQTKT-LPPQVSQLMQLSIERGYQNF 486

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           + LV++SR     +   ++ G +W G++AK  GL+D +G  ++  +    L       ++
Sbjct: 487 ISLVAQSRQKTPQEVDAIAQGHVWVGSDAKANGLVDQLGDFDDAVKKAAELAKL-EQYQL 545

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
             +    +    ++    + S +   +P   Q  V    A
Sbjct: 546 SWYTEEPDLL--NVMFSQVRSSVYALLPSAVQALVPAPVA 583



 Score = 97.0 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 103/291 (35%), Gaps = 38/291 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + F+ + I   +++  ++    +Y  + +   +       + + G + D           
Sbjct: 19  LNFIREFILNLFLVCLILVAIGIYSQFKAPPTEPVRGALLLDLTGVVVDKPSVNNKLRQF 78

Query: 52  ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92
                             ++++ I +   D + T +++ LS   G+     + I +A+++
Sbjct: 79  GREFFGASASRHQENSLFDIVDSIRQAKNDSNITGMVMDLSDFVGADQPSLQYIGKALRE 138

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            ++    I  V +      Y ++  +N I       V   G      Y K  LDKL V+ 
Sbjct: 139 FRDAGKPIFAVGDNFNQTQYYLASFANKIYLTPQGNVDLHGFATNNLYYKTLLDKLKVTA 198

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT----LV 206
              +    K+   PF   +++P A +     + + +  ++  V+ +R I   +       
Sbjct: 199 HIFRVGTYKSAVEPFIRDDMSPDAREADNRWISTLWQHYLDTVAANRQITPQQVFPGADA 258

Query: 207 LSDGR----IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           +  G       T   A +  L+D V     + QSL       +  K  ++ 
Sbjct: 259 VLAGLQKMDGDTARYALENKLVDEVAPHSAIEQSLIKAFGWDAKTKNFNFT 309


>gi|238754912|ref|ZP_04616262.1| Protease 4 [Yersinia ruckeri ATCC 29473]
 gi|238706923|gb|EEP99290.1| Protease 4 [Yersinia ruckeri ATCC 29473]
          Length = 616

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 69/285 (24%), Positives = 127/285 (44%), Gaps = 23/285 (8%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATAL 69
            +++  +     V+     +A I I G I D               +I     +    A+
Sbjct: 308 AISIYDYRPVPAVQQGEE-IAVIFINGAIMDGPQTPGSVGGDNTAAQIREARLNPKIKAV 366

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           ++ ++SPGGS  A E I   +  ++   KP++  +  MAAS GY +S  +N I+A+ ++L
Sbjct: 367 VLRVNSPGGSVSASELIRSELVALRAANKPLVVSMGGMAASGGYWVSTPANYIIASPSTL 426

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIG+       +  L+ LGV    V +SP+       + + P+  Q+MQ  +++ Y  
Sbjct: 427 TGSIGIFGVINTYQDSLETLGVHTDGVATSPLADVSVTKN-LPPEFSQIMQISIENGYKN 485

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           FV LV+ SR+   ++   ++ G +W G +AK  GL+D +G  ++  +    L   ++ + 
Sbjct: 486 FVDLVATSRHKTPEQVDEIAQGHVWLGLDAKNNGLVDQLGDFDDAVKKAAELAKLKTYQI 545

Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
                     WF D  N   + L+   +       +  +   W P
Sbjct: 546 ---------NWFVDQPNF--ADLILGQMTASVHAMLPSVLQAWLP 579



 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 104/298 (34%), Gaps = 44/298 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + FV + I   +++  +     +Y    S   +       + + G + D+          
Sbjct: 19  LNFVREFILNLFLIFLIAIGVGIYLLVQSKPVEPVKGALLVNLSGIVVDTPAVNNKVMQF 78

Query: 52  ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92
                             +++E I +   D + + +++SLS   G+     + I +A+++
Sbjct: 79  TRELLGASSNRLQENSLFDVVETIRQAKTDKNISGMVLSLSDFSGADQPSLQYIGKALRE 138

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            ++    I  V +      Y ++  +N I  +    +   G      Y K  L+KL V+ 
Sbjct: 139 FRDSGKPIFAVGDSYNQQQYYLASFANKIYLSPQGTIDLKGFASNNLYYKSLLEKLKVTT 198

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203
              +    K+   P    +++P A +     +   +  ++  V+ +R +  ++       
Sbjct: 199 NIFRVGTYKSAVEPMIRDDMSPAAREADSRWIGGLWQNYLTAVAANRQLSPEQLFPGAAN 258

Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNP 254
               L      TG  A +  L+D +  +  V   L           D +   I D+ P
Sbjct: 259 IISGLQAVGGDTGKYALEHKLVDQLATRPAVEAELIKTFGWNKRSNDYNAISIYDYRP 316


>gi|308064188|gb|ADO06075.1| protease IV (PspA) [Helicobacter pylori Sat464]
          Length = 292

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 126/256 (49%), Gaps = 4/256 (1%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESAPSEPPNLAKLYLNGAIFSAEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P   Q +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKQFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++   A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQNRLMEL 252

Query: 241 GVDQSIRKIKDWNPPK 256
              +    ++     +
Sbjct: 253 SKVKKAYWLEKSPMER 268


>gi|261339471|ref|ZP_05967329.1| signal peptide peptidase SppA [Enterobacter cancerogenus ATCC
           35316]
 gi|288318284|gb|EFC57222.1| signal peptide peptidase SppA [Enterobacter cancerogenus ATCC
           35316]
          Length = 618

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 128/273 (46%), Gaps = 14/273 (5%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPG 77
            +   +D+   +A +   G I D QE            +I     D    A+++ ++SPG
Sbjct: 317 AAKKPDDSGDSIAVVFANGAIMDGQETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPG 376

Query: 78  GSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GS  A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+  
Sbjct: 377 GSVSASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFG 436

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
               V+  LD LGV    V +SP+       S + P+  +MMQ  +++ Y  F+ LV++S
Sbjct: 437 VINTVENSLDYLGVHTDGVATSPLADVSVTKS-LPPEVSEMMQLSIENGYKRFITLVADS 495

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R    ++   ++ G +WTG +AK  GL+D +G  ++  +    L        +  +    
Sbjct: 496 RKKTPEQIDQIAQGHVWTGQDAKSNGLVDSLGDFDDAVKKAAELAKL-KQWHVDYYQDEP 554

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +++   + ++S+S  +   +P   Q  +    A
Sbjct: 555 SFFDMVMNSMSVS--VRAMLPEAMQAYLPAPVA 585



 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 103/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV   +    ++ L LV + +    S +S  + ++     + I G I D         
Sbjct: 19  LNFVRNLVMNIFFIFLVLVCVGIWMHISSTSQAQHSTRGALLLDITGVIVDKPSTSNRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               ++++ I +   D + T +++ L    G+     + I +A+
Sbjct: 79  VIGRQLFGATSDRLQENSLFDIVDTIRQAKDDRNITGIVLDLKDFAGADQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V +  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDAGKPVIAVGDSYSQGQYYLASFANKIWLSPQGTVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           +    +    K+   PF   +++P A +     +   +  ++  ++ +R I  ++     
Sbjct: 199 TTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLGTIAANRQITKEQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L      T   A    L+D +G   +V ++L          K
Sbjct: 259 QGVLDGLRKADGDTAKYALDNKLVDALGSSADVEKALTKQFGWSKEDK 306


>gi|124026360|ref|YP_001015476.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus str. NATL1A]
 gi|123961428|gb|ABM76211.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus str. NATL1A]
          Length = 269

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 69/264 (26%), Positives = 128/264 (48%), Gaps = 5/264 (1%)

Query: 33  DNSPHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            +   +ARI I G I       +++ +++I   +   AL++ + SPGG+    + I  A+
Sbjct: 8   KSKKRMARICIEGPINSETRKIVLKALKQIEERE-FPALLLRIDSPGGTVGDSQEIHSAL 66

Query: 91  QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
            +++ +   V+     ++AS G  I   +  IVA   ++ GSIGV+ +   +   L+K+G
Sbjct: 67  LRLREKGCHVVASFGNISASGGVYIGVGAEKIVANPGTITGSIGVILRGNNLSKLLEKVG 126

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +  ++VKS   K   SP   ++ +   ++Q ++DSSY  FV  VS+ RN+  +     +D
Sbjct: 127 IKFETVKSGIYKDILSPDRPLSTEERALLQSLIDSSYEQFVLAVSKGRNLTPEVVKSFAD 186

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           GR++TG +AK+ GL+D +G + +       +       K   +   K      L    I 
Sbjct: 187 GRVFTGEQAKEFGLVDEIGDENDAKLLAIKIANLDEKTKPITFGKTKKKLLGFLPGGKII 246

Query: 270 SLLEDTIPLMKQTKVQGLWAVWNP 293
             L + + L  +   Q LW ++ P
Sbjct: 247 HNLANALNLELEGNGQILW-LFKP 269


>gi|124265853|ref|YP_001019857.1| putative protease transmembrane protein [Methylibium petroleiphilum
           PM1]
 gi|124258628|gb|ABM93622.1| putative protease transmembrane protein [Methylibium petroleiphilum
           PM1]
          Length = 336

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 61/262 (23%), Positives = 114/262 (43%), Gaps = 15/262 (5%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSAT 67
           V+ +L+   ++     +    + PH A I IRG+I       ++ +   +     D  A 
Sbjct: 64  VIFALIAWALIT-QQRNAAVPSGPHTALIEIRGEIAAEALASAEGINAALRTAFEDAGAQ 122

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
           A+++ ++SPGGS      +   I++   +   K +     E+ ASA Y I+  ++ I   
Sbjct: 123 AVVLRINSPGGSPVQAGLVTDEIRRLKGLHADKKLYAVCEELCASAAYYIAAVADEIFVD 182

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
           + S+VGSIGVL         ++KLGV  + + +   K    PFS ++       Q +V+ 
Sbjct: 183 KASIVGSIGVLMDGFGFTGTMEKLGVERRLITAGDNKGLLDPFSPLSEAHKAYAQAMVNQ 242

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            +  F+++V + R     +      G  W+G  A + GL D +G  + V + +       
Sbjct: 243 IHQQFIKVVKDGRGARLKEAPETFSGLFWSGESAVQQGLADRLGSLDYVAREVVK----- 297

Query: 245 SIRKIKDWNPPKNYWFCDLKNL 266
              ++ D+ P +N      K  
Sbjct: 298 -AEEVIDYTPKENVAERLAKRF 318


>gi|253998978|ref|YP_003051041.1| peptidase S49 [Methylovorus sp. SIP3-4]
 gi|313201082|ref|YP_004039740.1| peptidase s49 [Methylovorus sp. MP688]
 gi|253985657|gb|ACT50514.1| peptidase S49 [Methylovorus sp. SIP3-4]
 gi|312440398|gb|ADQ84504.1| peptidase S49 [Methylovorus sp. MP688]
          Length = 316

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 118/278 (42%), Gaps = 18/278 (6%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSW----SSHVEDNSPHVARIAIRGQIEDSQ-----ELIER 56
           +     +  L+ + L ++ F            NS H A I I G I         ++I  
Sbjct: 31  RFWGVLFKSLTFIYLFMLLFYALDWVGGDSSANSDHTAIIDIYGVIGSDDQVSADDVIGS 90

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAGYL 113
           +E    +     +I+ ++SPGGS      I   I   +K+    PV   V ++ AS GY 
Sbjct: 91  LESAYENKHTKGIILRINSPGGSPVQAGIINDEIHRQRKLHPNIPVYAVVEDICASGGYY 150

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           I+ A++ I   + S+VGSIGVL         +DK+GV  + + +   KA   PFS VNPK
Sbjct: 151 IAVAADKIFVDKASIVGSIGVLMDGFGFTGIMDKVGVERRLLTAGENKAILDPFSPVNPK 210

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
             +  Q +++  +  F+ +V E R     +T     G  W+G  + ++GL D  G  + V
Sbjct: 211 HKEYAQSMLNQIHQQFIAVVREGRGKRLKETDDTFSGLFWSGETSVQMGLADGFGSSDYV 270

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
            + +          KI D+   +       K +  S  
Sbjct: 271 AREIIKQ------EKIVDFTAREGLADKFAKRIGASMG 302


>gi|317011567|gb|ADU85314.1| Signal peptide protease IV (Protease IV) (Endopeptidase IV)
           [Helicobacter pylori SouthAfrica7]
          Length = 292

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 134/277 (48%), Gaps = 7/277 (2%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS       N P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESAPSNPPNLAKLYLNGAIFSAEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P     +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVEDLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKDFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +  +     ++G++++   A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARKLDANHYKDFAEGKVFSAQNALKLKLIDKISTIKQAQNRLMEL 252

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
              +    ++     +   F +    S S ++   + 
Sbjct: 253 SKVKKAYWLEKSPMER---FIEKATQSASHIITQALG 286


>gi|115351045|ref|YP_772884.1| peptidase S49 [Burkholderia ambifaria AMMD]
 gi|115281033|gb|ABI86550.1| peptidase S49 [Burkholderia ambifaria AMMD]
          Length = 330

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 123/286 (43%), Gaps = 17/286 (5%)

Query: 7   KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           KI  R+    +  L+   ++ FS  +       H A + I G+I      + +++   ++
Sbjct: 44  KIFFRFAFLGVFLLLAFALIDFSNDAKFASTGRHTALVTIDGEIAAGTNANGEDINTALD 103

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115
               DD A  +++ ++SPGGS      ++  I++++ +   KP+   V +M AS GY I+
Sbjct: 104 AAFDDDGAAGVVLRINSPGGSPVQAGMVYDEIRRLRTKYPNKPLYVVVTDMCASGGYYIA 163

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         + KLGV  +   S   K    PFS   PK  
Sbjct: 164 SAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVDRRLHTSGENKGFYDPFSPETPKMD 223

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q ++D  +  F++ V + R     +T  +  G  WTG ++ ++GL D  G  + V +
Sbjct: 224 AHAQALLDQVHAQFIKAVKDGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDTVAR 283

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
            +           + D+   ++      +    +        L   
Sbjct: 284 DVLK------APDLVDYTVKESLTNRVARKFGAAVGGAAMKALAAG 323


>gi|326795267|ref|YP_004313087.1| peptidase S49 [Marinomonas mediterranea MMB-1]
 gi|326546031|gb|ADZ91251.1| peptidase S49 [Marinomonas mediterranea MMB-1]
          Length = 367

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 124/277 (44%), Gaps = 17/277 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSS---HVEDNSPHVARIAIRGQI-----EDSQELIERIE 58
           KI  R+V L L+    V +S SS           VA I +RG I      D+ E    IE
Sbjct: 88  KIFFRFVGLFLIVGIFVGWSASSVVEDAALTGDSVALIPMRGTIGAGLDIDADEYSLLIE 147

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAGYLIS 115
               D    A+++ ++SPGGS      ++  +   +K     P+I  V +MAAS GY I+
Sbjct: 148 DAYADARTKAVVIKMNSPGGSPVHSGILYDLLMSKRKSYPDIPLIVVVSDMAASGGYYIA 207

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I A + SLVGSIGV+         L+ +GV  ++  +   KA   PFS + P A 
Sbjct: 208 SAADEIYADKASLVGSIGVVSPGFDASGLLESIGVERRTFTAGEDKAFLDPFSPMTPSAA 267

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           Q  Q V+DS++  F+  V + R         L  G ++TG +A   GLID +     V  
Sbjct: 268 QKWQSVLDSTHKQFIEAVKKGRGDRLSLERDLFTGMVFTGEQAVSYGLIDGLDYTGHVLS 327

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
           S +      S      + P +  W    K L IS   
Sbjct: 328 SRF------SNLTPVYYEPREEPWKEVAKELGISFAT 358


>gi|295706883|ref|YP_003599958.1| signal peptide peptidase SppA, 36K type [Bacillus megaterium DSM
           319]
 gi|294804542|gb|ADF41608.1| signal peptide peptidase SppA, 36K type [Bacillus megaterium DSM
           319]
          Length = 336

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 77/331 (23%), Positives = 142/331 (42%), Gaps = 45/331 (13%)

Query: 6   KKIKTRYV---MLSLVTLTVVYFSWSSHVEDN----------------------SPHVAR 40
           K+     +   +     +  + FS     ++                       +  +A 
Sbjct: 4   KRWIALLIAACLFIFSAIVNIGFSVKEEKDNGLAGIFGGDDSELSETVIEKGNVAKKIAV 63

Query: 41  IAIRGQIEDS---------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           + + G I+D+               Q  ++++E    D +   +I+ ++SPGG       
Sbjct: 64  LEVNGTIQDTGSGSSPLMSQNGYNHQAFLKQLEAAKNDKAVKGVIIKVNSPGGGVVESAE 123

Query: 86  IFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           I + I+++K   +KPV   +  MAAS GY IS A+N I A   +L GS+GV+ Q      
Sbjct: 124 IHKKIEELKKDTKKPVYISMGSMAASGGYYISTAANKIYAIPDTLTGSLGVIMQSVNYGK 183

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
             DKLGV    +KS   K   SP  E+  +  ++MQ +VD+SY  FV ++SE R++  +K
Sbjct: 184 LADKLGVESVVIKSGAHKDIMSPTREMTGEEKEIMQTLVDNSYDGFVNVISEGRHLSKEK 243

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD---WNPPKNYWF 260
              ++DGR++ G +AK++ L+D +G  E+  + +      +  + I+    +  P     
Sbjct: 244 VRSIADGRVYDGRQAKELKLVDQLGYFEDAVKGMEKDYKLKGAQVIQYNQGFGLPSWLSM 303

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
              K +     +   +    Q     L  ++
Sbjct: 304 SMQKVIGGDEQVTAMLKTFAQPSSPRLMYLY 334


>gi|56752187|ref|YP_172888.1| protease IV [Synechococcus elongatus PCC 6301]
 gi|81300725|ref|YP_400933.1| signal peptide peptidase A [Synechococcus elongatus PCC 7942]
 gi|56687146|dbj|BAD80368.1| protease IV [Synechococcus elongatus PCC 6301]
 gi|81169606|gb|ABB57946.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49
           [Synechococcus elongatus PCC 7942]
          Length = 270

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 68/264 (25%), Positives = 127/264 (48%), Gaps = 6/264 (2%)

Query: 34  NSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
               +ARI + G I     Q L+  ++ ++      AL++ + SPGG+    + I+ A++
Sbjct: 9   ARKQIARIEVSGAIAGGTRQRLLRSLKTVAE-RGYPALLLRIDSPGGTVGDSQEIYEALK 67

Query: 92  KVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           +++++     I     ++AS G  I   ++ IV+   ++ GSIGV+ +   ++  LD++G
Sbjct: 68  RLRSQHQTKVIASFGNISASGGVYIGMGADKIVSNPGTITGSIGVILRGNNLERLLDRVG 127

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           VS K +KS P K   S   E+     +++Q+++D SY  FV+ V+++R +  +     +D
Sbjct: 128 VSFKVIKSGPYKDILSFDRELTDNEKEILQNLIDISYQQFVQTVADARQLTVETVKSFAD 187

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           GRI+TG +A  +GLID +G +E+  +    L      +               L  L   
Sbjct: 188 GRIFTGEQALSLGLIDRLGTEEDARRWAAELVGLDPEKATLAPIEEPKPLTRRLLPLGQV 247

Query: 270 SLLEDTIPLMKQTKVQGLWAVWNP 293
               D +        Q LW ++ P
Sbjct: 248 GAGLDWLEFELTAAGQPLW-LYRP 270


>gi|33866416|ref|NP_897975.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp. WH
           8102]
 gi|33633194|emb|CAE08399.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp. WH
           8102]
          Length = 270

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 129/257 (50%), Gaps = 6/257 (2%)

Query: 41  IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK- 97
           I + G I  S  Q +++ I  +   +   AL++ + SPGG+    + I  A+ +++ +  
Sbjct: 16  IVVDGPITGSTRQRVLKAIRDVEERE-FPALLLRIDSPGGTVGDSQEIHAALLRLREKGC 74

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
            V+     ++AS G  I  A+  IVA   ++ GSIGV+ +   +    +++G+   +VKS
Sbjct: 75  RVVASFGNISASGGVYIGVAAESIVANPGTITGSIGVILRGNDLSKVFERIGIRFDTVKS 134

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
              K   SP   ++P+   ++Q+++DSSY  FVR+V+E R++  +     +DGR+++G +
Sbjct: 135 GVYKDILSPDRPLSPEERALLQELIDSSYGQFVRVVAEGRSLTEETVRGFADGRVFSGEQ 194

Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
           AK +GL+D +G ++   +    L        +      P+      L    + +LL+  +
Sbjct: 195 AKTLGLVDELGDEDHARRLAARLADLDETTTRPVTLGKPRKKLMNLLPGSQLIALLQQRL 254

Query: 277 PLMKQTKVQGLWAVWNP 293
            L      Q LW ++ P
Sbjct: 255 SLELMGSGQVLW-LYRP 270


>gi|317010195|gb|ADU80775.1| Signal peptide protease IV (Protease IV) (Endopeptidase IV)
           [Helicobacter pylori India7]
          Length = 292

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 133/277 (48%), Gaps = 7/277 (2%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESAPSAPPNLAKLYLNGAIFSTEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGIMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P   + +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++   A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQDRLMEL 252

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
              +    ++     +   F +    S S+++     
Sbjct: 253 SKVKKAYWLEKSPMER---FIEKATQSASNIITQAFG 286


>gi|254423418|ref|ZP_05037136.1| signal peptide peptidase SppA, 36K type [Synechococcus sp. PCC
           7335]
 gi|196190907|gb|EDX85871.1| signal peptide peptidase SppA, 36K type [Synechococcus sp. PCC
           7335]
          Length = 286

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 126/251 (50%), Gaps = 5/251 (1%)

Query: 36  PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
             +ARI I G I  S  + ++E ++ +       AL++ + SPGG+    + I+ A++K+
Sbjct: 11  KQIARIEISGAIAGSTRKRVLEALKEVEE-KKFPALLLRIDSPGGTVGDSQEIYSALRKL 69

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           + +  ++     ++AS G  I   ++ IVA    + GSIGV+ +   ++  LDK+GVS K
Sbjct: 70  QEKVKIVASYGNISASGGVYIGVGAHHIVANAGCITGSIGVILRGNNIEKLLDKVGVSFK 129

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
            VKS P K   +    +  +   ++Q+++D SY  FVR V+E RN+P  K    +DGR++
Sbjct: 130 VVKSGPYKDILAFDRPLTSEEETILQELIDVSYGQFVRTVAEGRNLPEAKVREFADGRVF 189

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLKNL-SISSL 271
           TG +A  +G++D +G +E+  +    L   D    +   +   K      L    ++   
Sbjct: 190 TGEQALALGMVDRLGSEEDARRWAAELSGLDPEKAECFTFEEKKPLLSRVLPGNDALLGF 249

Query: 272 LEDTIPLMKQT 282
           L   +P     
Sbjct: 250 LPAAMPATMAR 260


>gi|145629711|ref|ZP_01785507.1| protease IV [Haemophilus influenzae 22.1-21]
 gi|144978048|gb|EDJ87827.1| protease IV [Haemophilus influenzae 22.1-21]
          Length = 308

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 126/256 (49%), Gaps = 14/256 (5%)

Query: 36  PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             +A + + G I D +          +   + +   D+S  A+++ ++SPGGSA+A E I
Sbjct: 15  NKIAVVNVEGAIIDGESDEENAGGDTIARILRKAQDDNSVKAVVLRVNSPGGSAFASEII 74

Query: 87  FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
            +  + ++   KPVI  +  MAAS GY IS  ++ I+A E ++ GSIG+   +P  +  +
Sbjct: 75  RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADENTITGSIGIFTMFPTFENSI 134

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV    V ++ +    S FS +      + Q  +   Y  F+ +VS+ R +   +  
Sbjct: 135 KKIGVHADGVSTTELANT-SAFSPLAKPVQDIYQTEIQYGYDRFLEIVSKGRQLSKTQVD 193

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L+ G++W G++A + GL+D +G   E       L   +    ++D++     WF D   
Sbjct: 194 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 250

Query: 266 LSISSLLEDTIPLMKQ 281
             IS+LL DT    ++
Sbjct: 251 SLISTLLRDTKKGTQE 266


>gi|260769000|ref|ZP_05877934.1| protease IV [Vibrio furnissii CIP 102972]
 gi|260617030|gb|EEX42215.1| protease IV [Vibrio furnissii CIP 102972]
          Length = 616

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 76/281 (27%), Positives = 132/281 (46%), Gaps = 21/281 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGG 78
           S   +  +  +A +   G I D            L   + +   DD   A+++ + SPGG
Sbjct: 317 SPTFDMAADDIAVVVASGAIMDGVQPRGTVGGDTLASLLRQARNDDKVKAVVLRVDSPGG 376

Query: 79  SAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           SA+A E I   I+ +K   KPV+  +  +AAS GY IS + + IVA  T+L GSIG+   
Sbjct: 377 SAFASEVIRNEIEAIKAAGKPVVISMSSLAASGGYWISMSGDQIVAQPTTLTGSIGIFSV 436

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
               +  L+KLG+    V +SP  +     + ++      +Q  ++  YH F+ LV+E R
Sbjct: 437 ITTFEKGLNKLGIYTDGVGTSPF-SGVGVTTGLSDGIKDALQMGIEHGYHRFISLVAEHR 495

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPP 255
           ++   +   ++ GR+WT  +A+K+GL+D +G  ++      +L      ++  +++   P
Sbjct: 496 HMSEQEVDKVAQGRVWTAQDAQKLGLVDKLGDFDDAVALAASLAKLDTYNLYWVEEPLSP 555

Query: 256 KNYWFCDL-------KNLSISSLLEDTI-PLMKQTKVQGLW 288
              +  DL         L +SSL+ D + P  KQ       
Sbjct: 556 AQQFLQDLFGQVRVGLGLDVSSLMPDALKPATKQLVSDANL 596



 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 94/284 (33%), Gaps = 37/284 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVED-NSPHVARIAIRGQIEDSQ-------- 51
           + F+   +     +LS+  +  +Y    S     +      + + G I + +        
Sbjct: 19  ITFIRLALTNLIFLLSIAIIYFIYIHAESPTPTVDKASALVLNLSGPIVEQRTYVNPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93
                            ++++ +     D   T L+++L   P  +      I +AI + 
Sbjct: 79  FAGSVLGQDLPKENVLFDIVDTLRYAKDDKQVTGLVLALRDLPETNLTKLRYIAKAINEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ I  +    V   G      Y K  L+KL V+  
Sbjct: 139 KASGKPVYAVGDFYNQSQYYLASYADKIFLSPDGAVMLRGYSAYNLYYKTLLEKLDVNTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-------- 203
             +    K+   PF   +++  A +     +   +  +V  V+ +R I            
Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAARESASRWLTQLWGAYVDDVATNRQIDAKTLTPSMDEF 258

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
             +L          + K GL+D +  +++V   L  +       
Sbjct: 259 LALLKQSSGNLADLSLKAGLVDELATRQQVRAELTDVFGSDGDD 302


>gi|317179610|dbj|BAJ57398.1| protease IV [Helicobacter pylori F30]
          Length = 292

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 125/256 (48%), Gaps = 4/256 (1%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESAPSAPPNLAKLYLNGAIFSAEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P     +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKDFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++   A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVDDVAKARKLDAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQNRLMEL 252

Query: 241 GVDQSIRKIKDWNPPK 256
              +    ++     +
Sbjct: 253 SKVKKAYWLEKSPMER 268


>gi|326801407|ref|YP_004319226.1| signal peptide peptidase SppA, 67K type [Sphingobacterium sp. 21]
 gi|326552171|gb|ADZ80556.1| signal peptide peptidase SppA, 67K type [Sphingobacterium sp. 21]
          Length = 588

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 66/254 (25%), Positives = 119/254 (46%), Gaps = 11/254 (4%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLS 74
           Y S  +    +   +A +   G I           S+ +   I  +  DD   A+++ ++
Sbjct: 294 YTSPKTEENGSQNRLAVVYAVGDIVSGEGSDEQIGSERISRAIRTVREDDKVKAVVLRIN 353

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGGS+ A + I++ ++  K  KP+I  + ++AAS GY I+CA++ I A   ++ GSIGV
Sbjct: 354 SPGGSSLASDVIWKEVELTKKVKPIIVSMGDVAASGGYYIACAADSIFAQPNTITGSIGV 413

Query: 135 LFQYPYVKPFLDK-LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
               P ++ F +  LG++   VK+       S    +      ++Q  V+ +Y  F + V
Sbjct: 414 FGIIPNLQNFFNNKLGITFDEVKTGKYADLMSVNRPLTADERDLIQQEVNKTYDTFTKKV 473

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           +  R I   +   +  GR+WTGA+A K+GL+D +    E   +       +   K+  + 
Sbjct: 474 ANGRKISQSQVDSIGQGRVWTGAQAAKIGLVDRLASFNEAITAAARKAKLKD-YKLVSYP 532

Query: 254 PPKNYWFCDLKNLS 267
             K+     L + S
Sbjct: 533 AMKDPLEAFLGSSS 546



 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 60/319 (18%), Positives = 118/319 (36%), Gaps = 42/319 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSW------------SSHVEDNSPHVARIAIRGQI- 47
           M+   K +    + + L T+   + +                VE +   + R+++   I 
Sbjct: 1   MKQFFKFVFASMLGVFLSTIIFFFVAIAIMAAIISAASSDKAVEISENSILRVSLNYAIK 60

Query: 48  ---------------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
                                    E++ RI+    D+    +++ +   G S    + I
Sbjct: 61  ERTDRSPFNNVSLPSMNSEKYIGLDEILLRIDAAKNDNRIKGIVLDMDGIGASFATLQEI 120

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
             A+ K K  K  I    E  +  GY ++  ++ +       V   G+  Q P+ K  L+
Sbjct: 121 RDALLKFKESKKFILAYSEGYSMKGYYLASTADKVYLNPEGSVDFRGMAAQLPFFKGTLE 180

Query: 147 KLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           KLG+  + VK    K+   PF   +++P   + +   ++S Y +++  VS+SRNIP D  
Sbjct: 181 KLGIEAQVVKVGTYKSAVEPFILDKMSPANKEQVNSYLNSLYDYYLGNVSKSRNIPMDSL 240

Query: 205 LVLSDG-RIWTGAEAKKVGLIDVVGGQEEVWQSLY-----ALGVDQSIRKIKDWNPPKNY 258
             ++D        +A    L+D +  + E+   L                I+D+  PK  
Sbjct: 241 RNIADNYSGRDAEKALNAKLVDGLKYKNEIIDELKVKLGIDKKKKIKSINIEDYTSPKTE 300

Query: 259 WFCDLKNLSISSLLEDTIP 277
                  L++   + D + 
Sbjct: 301 ENGSQNRLAVVYAVGDIVS 319


>gi|315180695|gb|ADT87609.1| protease IV [Vibrio furnissii NCTC 11218]
          Length = 616

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 77/281 (27%), Positives = 132/281 (46%), Gaps = 21/281 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGG 78
           S   +  +  +A +   G I D            L   + +   DD   A+++ + SPGG
Sbjct: 317 SPTFDMAADDIAVVVASGAIMDGVQPRGTVGGDTLASLLRQARNDDKVKAVVLRVDSPGG 376

Query: 79  SAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           SA+A E I   I+ +K   KPV+  +  +AAS GY IS + + IVA  T+L GSIG+   
Sbjct: 377 SAFASEVIRNEIEAIKAAGKPVVISMSSLAASGGYWISMSGDQIVAQPTTLTGSIGIFSV 436

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
               +  L+KLG+    V +SP  +     + ++      +Q  ++  YH F+ LV+E R
Sbjct: 437 ITTFEKGLNKLGIYTDGVGTSPF-SGVGVTTGLSDGIKDALQMGIEHGYHRFISLVAEHR 495

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPP 255
           ++   +   ++ GR+WT  +A+K+GL+D +G  ++      +L      ++  +++   P
Sbjct: 496 HMSEQEVDKVAQGRVWTAQDAQKLGLVDKLGDFDDAVALAASLAKLDTYNLYWVEEPLSP 555

Query: 256 KNYWFCDL-------KNLSISSLLEDTI-PLMKQTKVQGLW 288
              +  DL         L ISSL+ D + P  KQ       
Sbjct: 556 AQQFLQDLFGQVRVGLGLDISSLMPDALKPATKQLVSDANL 596



 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 94/284 (33%), Gaps = 37/284 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVED-NSPHVARIAIRGQIEDSQ-------- 51
           + F+   +     +LS+  +  +Y    S     +      + + G I + +        
Sbjct: 19  ITFIRLALTNLIFLLSIAIIYFIYIHAESPTPTVDKASALVLNLSGPIVEQRTYVNPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93
                            ++++ +     D   T L+++L   P  +      I +AI + 
Sbjct: 79  FAGSVLGQDLPKENVLFDIVDTLRYAKDDQQVTGLVLALRDLPETNLTKLRYIAKAINEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ I  +    V   G      Y K  L+KL V+  
Sbjct: 139 KASGKPVYAVGDFYNQSQYYLASYADKIFLSPDGAVMLRGYSAYNLYYKTLLEKLDVNTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-------- 203
             +    K+   PF   +++  A +     +   +  +V  V+ +R I            
Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAARESASRWLTQLWGAYVDDVATNRQIDAKTLTPSMDEF 258

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
             +L          + K GL+D +  +++V   L  +       
Sbjct: 259 LALLKQSSGNLADLSLKAGLVDELATRQQVRAELTDVFGSDGDD 302


>gi|109948135|ref|YP_665363.1| protease IV [Helicobacter acinonychis str. Sheeba]
 gi|109715356|emb|CAK00364.1| protease IV [Helicobacter acinonychis str. Sheeba]
          Length = 292

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 133/277 (48%), Gaps = 7/277 (2%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  ++   + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESAPSTPPNLAKLYLNGAIFSTEYFNKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKIPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P     +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKDFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++RN+        ++G++++  +A  + LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARNLNPKDYKNFAEGKVFSAQKALSLKLIDKISTIKQAQNRLMEL 252

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
              +    ++     +   F +    S ++++   + 
Sbjct: 253 SKVKKAYWLEKSPMER---FIEKATQSATNIITQALG 286


>gi|152996263|ref|YP_001341098.1| signal peptide peptidase SppA, 36K type [Marinomonas sp. MWYL1]
 gi|150837187|gb|ABR71163.1| signal peptide peptidase SppA, 36K type [Marinomonas sp. MWYL1]
          Length = 339

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 73/277 (26%), Positives = 128/277 (46%), Gaps = 17/277 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVED---NSPHVARIAIRGQI-----EDSQELIERIE 58
           +I  R+  L++    V  +   S+ +D       VA I +RG I      +S E +  ++
Sbjct: 60  RIFFRFTTLAIFLAVVGGWFAKSNFQDVSLEGDIVAMIPMRGVIGADNEIESSEFVGLLD 119

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLIS 115
              ++     +++ ++SPGGS      I+ AI+  +   P I     V +MAAS GY I+
Sbjct: 120 AAYQNSRLKGVVIEMNSPGGSPVHSGIIYDAIRAKEQNYPDIPVLVVVEDMAASGGYYIA 179

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A+N I A + SLVGSIGV+         L+K+GV  ++  +   KA   PF+ +  +A 
Sbjct: 180 SAANEIYADKASLVGSIGVISSGFDASNLLEKIGVERRTFTAGRNKAFLDPFAPMTEEAK 239

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q V+D ++  F+  V E R      T  +  G ++TG++A K+GLID +    ++  
Sbjct: 240 VKWQAVLDETHQQFINAVKEGRGDRLVITDDVFSGMVFTGSQAIKIGLIDGLASVTDILD 299

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
           + +         +   + P ++ W    K   +    
Sbjct: 300 TRF------PDAEPVVYEPKQDSWKELAKEFGVEMAT 330


>gi|78485488|ref|YP_391413.1| peptidase S49 [Thiomicrospira crunogena XCL-2]
 gi|78363774|gb|ABB41739.1| S49 peptidase family protein [Thiomicrospira crunogena XCL-2]
          Length = 312

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 66/275 (24%), Positives = 125/275 (45%), Gaps = 16/275 (5%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVE--DNSPHVARIAIRGQIE-----DSQELIERIERI 60
           +K   ++  +VTL ++   ++S  +    S HVA + + G I       ++ L   +   
Sbjct: 34  LKLSVILYIIVTLVMLASQFTSEEDVLSGSKHVAVVKLEGAIMPGSRTSAETLNPLLNSA 93

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCAS 118
            ++ ++ A+I+  +SPGGS      I   I ++K    KPV   V ++ AS  Y I+ A+
Sbjct: 94  FKNPNSQAVIIKANSPGGSPVQSALINDEITRLKTLYNKPVYVVVEDLCASGCYYIAVAA 153

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I A + S++GSIGV      V   ++K+G+  +S+ +   KA   PFS  +    Q  
Sbjct: 154 DKIYANKGSIIGSIGVRMDTFGVTGLMEKMGIENRSMHAGEHKAFIDPFSPKDESGRQFF 213

Query: 179 QDVV-DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           Q+ + + ++  F+  V + R     +      G +W G EA K G+ID +G    V + +
Sbjct: 214 QERILERTHQQFIEAVRKGRGDRIKENENTYTGLVWLGDEAVKNGMIDGLGDIGYVKREI 273

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
                       + +   K +    + ++S  +  
Sbjct: 274 IKQTN------TRHYEAEKTFMEQLMGDISSETAT 302


>gi|313623585|gb|EFR93759.1| putative signal peptide peptidase SppA [Listeria innocua FSL
           J1-023]
          Length = 337

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 71/274 (25%), Positives = 134/274 (48%), Gaps = 19/274 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76
            E  +  +A +++ G I+D+ E               ++++E +  +D+   +++ ++SP
Sbjct: 56  EEGGADTIAVLSVDGTIQDTGEAGSLFSETGYNHTFFMDQLEEVRNNDAIQGVLLYVNSP 115

Query: 77  GGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG       I   I ++K   + P    +  MAAS GY IS  ++ I A++ +L GS+GV
Sbjct: 116 GGGVMESAQIRDKILQIKKERKIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           + Q       + KLGVS  ++KS   K   S    +  +  ++MQ ++D SY+ FV++V+
Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGAYKDIMSGTRPMTDEEKKIMQSMIDDSYNEFVKVVA 235

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
             R +  ++   ++DGRI+ G +AK+ GLID  G QE+  ++L      +    I+   P
Sbjct: 236 TGRGMSEEQVRKIADGRIYDGRQAKENGLIDAFGYQEDALEALKKEKDLKDATVIQYDAP 295

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                F  L +++   +      + +  K+ G  
Sbjct: 296 ES---FSSLFSVAAQKMTGQNADITQLIKLTGTL 326


>gi|126668129|ref|ZP_01739091.1| peptidase, putative [Marinobacter sp. ELB17]
 gi|126627399|gb|EAZ98034.1| peptidase, putative [Marinobacter sp. ELB17]
          Length = 341

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 115/274 (41%), Gaps = 14/274 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           +  K  T   +  +V L                H A I + G I       +  ++  + 
Sbjct: 57  IFFKFLTFAYLFGIVLLFKFPLGQGLESATGGMHTAVIGVDGPIAADELASADNIVSSLR 116

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLIS 115
               +  A A+I+ ++SPGGS      ++  I+++      K V   + ++ AS  Y I+
Sbjct: 117 AAFVEPDAAAVILRINSPGGSPVQSGYVYDEIKRLRTEYPDKKVYAVISDIGASGAYYIA 176

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I A   SLVGSIGV+         + KLGV  +   +   K    PFS   P+ V
Sbjct: 177 SAADEIYANRASLVGSIGVVAGGFGFTEVMGKLGVERRLYTAGESKGFLDPFSAEKPEEV 236

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q V+++++  F+  V + R         +  G IW+G +A ++GLID +G    V +
Sbjct: 237 AFWQSVLENTHGQFIAAVQQGRGDRLADDPRVFSGLIWSGEQALELGLIDGLGSASYVAR 296

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
            +           + D++  ++     +  L +S
Sbjct: 297 QIVGH------ENLVDYSRARSPLRNLMDQLGVS 324


>gi|328797928|dbj|BAH10025.2| probable peptidase [Pseudomonas putida]
 gi|328797942|dbj|BAC41612.2| probable peptidase [Pseudomonas resinovorans]
          Length = 311

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 132/296 (44%), Gaps = 24/296 (8%)

Query: 6   KKIKTRY----VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIER 56
           ++ K  +    + + +    V   +    V  + P  A+I +RG I D +E     L   
Sbjct: 23  RRWKNFFRLATLGIVVTAFVVGGRADLDGVGADVPVTAKIKVRGVIADGEEASAENLKRS 82

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYL 113
           + +   +++  A+I+ ++SPGGS      ++  ++++        V   + ++ AS GY 
Sbjct: 83  LGKAFENENTKAVILEINSPGGSPVQAGHVYDEVRRLRALHPDTKVYAVITDLGASGGYY 142

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           I+ A++ I A + SLVGSIGV          + KLGV  ++  S   KA    F   NP+
Sbjct: 143 IASAADEIFADKASLVGSIGVTAASFGYVELMQKLGVERRAYTSGEHKAFLDQFQPQNPE 202

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
             +  + V+ ++++ F+R V   R       +   L  G IWTG +A  +GL+D +G  +
Sbjct: 203 ERKFWEGVLKTTHNQFIRSVEAGRGDRLKAKENPDLYSGLIWTGEQAVGLGLVDRLGDSD 262

Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
            V + +        + KI D+   +N        +  S  + D + L  +    GL
Sbjct: 263 YVAREVVG------VSKIVDFTRKQNPLDRFASKIGAS--VADQLSL--RLGFDGL 308


>gi|330830951|ref|YP_004393903.1| signal peptide peptidase SppA, 67K type [Aeromonas veronii B565]
 gi|328806087|gb|AEB51286.1| Signal peptide peptidase SppA, 67K type [Aeromonas veronii B565]
          Length = 614

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 69/278 (24%), Positives = 121/278 (43%), Gaps = 13/278 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSL 73
           +      + +     V  +   G I D            L + +    RDD   A+++ +
Sbjct: 311 LAAIPEQYPQSGKDEVGLVVASGAIMDGVQPAGTIGGDSLSDLLADARRDDQVKAVVLRV 370

Query: 74  SSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
            SPGGSA+A E I   +  + +  KPV+  +   AAS GY IS  ++ I A+ T+L GSI
Sbjct: 371 DSPGGSAFAAEQIRAELLALKQAGKPVVVSMGSYAASGGYWISADADKIFASPTTLTGSI 430

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GV   +  +   L + GV    V ++       P   +     Q +Q  V+ +Y  F+ L
Sbjct: 431 GVFGMFATIDKALAQFGVHTDGVGTTDY-VGVGPTRALPDHVGQAIQLSVEDTYQRFIGL 489

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS--IRKIK 250
           VS+ R +  ++    ++GR+WTG +AK +GL+D  G  ++  ++   L   +   +  I+
Sbjct: 490 VSKGRGLSPEEAEKAAEGRVWTGEDAKALGLVDEFGNLDDAIKAAAELANLKEWQVTPIE 549

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                K+ +   L + S   L       +     + L 
Sbjct: 550 QEESTKDKFLRQLFDSSAQVLAPQLQSWLPAGFGKALV 587



 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 100/283 (35%), Gaps = 38/283 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + F  + +    + L +V + V   S     +        + + G + + +         
Sbjct: 18  LNF-TRLMLVNLLFLIVVLVIVFSVSQKEAPKAPIEGALTLNLNGVLVEQRSQTDPTVQL 76

Query: 52  -----------------ELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKV 93
                            +L+  I+    D+   AL++      G+     + +  AI   
Sbjct: 77  LRQMDSSDEQPSEIVLSDLLWAIKSAKDDERIKALVIKPQGLQGANFTKLQEVASAIDSF 136

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           +     +  + +      YL++  ++ ++  ++  V   G+     Y K  L+KL ++  
Sbjct: 137 RESGKPVIAMADFYTQGQYLLAAHADHVLLNQSGAVVIEGLGVYQTYFKSALEKLNITPH 196

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT------- 204
             K    K+   P+   E++P++ +  Q  +D  +  +V  V+E R I  D         
Sbjct: 197 VFKVGTYKSFVEPYTRDEMSPESKEANQRWLDQLWQSYVADVAEQREIEPDAVAPGKERF 256

Query: 205 -LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
             +L          A   GL+D +  ++E+ Q++     +   
Sbjct: 257 LELLRKAGGNAANYALDNGLVDQLATRDEMTQAVIKEVGEADD 299


>gi|317181116|dbj|BAJ58902.1| protease IV [Helicobacter pylori F32]
          Length = 292

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 127/256 (49%), Gaps = 4/256 (1%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESAPSAPPNLAKLYLNGAIFSTEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P   + +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++  +A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQNRLMEL 252

Query: 241 GVDQSIRKIKDWNPPK 256
              +    ++     +
Sbjct: 253 SRVKKAYWLEKSPMER 268


>gi|258404286|ref|YP_003197028.1| signal peptide peptidase SppA, 36K type [Desulfohalobium retbaense
           DSM 5692]
 gi|257796513|gb|ACV67450.1| signal peptide peptidase SppA, 36K type [Desulfohalobium retbaense
           DSM 5692]
          Length = 296

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 120/263 (45%), Gaps = 1/263 (0%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
           F    I     +         Y+S              + +RG + +++ +   IE + +
Sbjct: 15  FGFMLIAAAVALFMGAMAAFSYWSGQGGGWGQPQI-GVVHVRGVLTNARPVTHWIETLRQ 73

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
            +    ++V ++SPGG     + ++ A+  +   KPV+  +  +AAS GY ++  +  I 
Sbjct: 74  KNRVKGVLVRINSPGGVVAPSQEVYSAVSSLAEDKPVVVSMGSVAASGGYYVAVGAPTIF 133

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A   ++ GSIGV  Q    K  LDKLG+  ++V S P+K   S    +     + MQ +V
Sbjct: 134 ANPGTITGSIGVKAQLKNFKGLLDKLGIEDETVVSGPLKDATSAAKPMTEAERKYMQGMV 193

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           D  +  FV+ +++ R++  +    L+DGR +TG +AK +GL+D +G  ++    L     
Sbjct: 194 DDMHAQFVQAIAKGRDMDLEVVRRLADGRAYTGRQAKDLGLVDALGSMQDALDVLRHKAQ 253

Query: 243 DQSIRKIKDWNPPKNYWFCDLKN 265
             +   + +    +   +  L +
Sbjct: 254 VGTDYALVEGPERERSLWQWLLS 276


>gi|237731223|ref|ZP_04561704.1| protease 4 [Citrobacter sp. 30_2]
 gi|226906762|gb|EEH92680.1| protease 4 [Citrobacter sp. 30_2]
          Length = 618

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 74/271 (27%), Positives = 121/271 (44%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETPGNVGGDTTAAQIREARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   K   KPV+  +  MAAS GY IS  ++ IVA  ++L GSIG+    
Sbjct: 379 VSASEVIRAELAAAKAAGKPVVVSMGGMAASGGYWISTPASYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+  QMMQ  +++ Y  F+ LV+++R 
Sbjct: 439 NTVENSLDSIGVHTDGVATSPLAD-ISITKALPPEVQQMMQLSIENGYKRFITLVADARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        I+ +      
Sbjct: 498 TTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHIEYY--QDEP 554

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
            F D+   S+S  +   +P   Q  +    A
Sbjct: 555 TFVDMVMDSMSGSVRAMLPEAIQAMLPAPLA 585



 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S S+  E        + I G I D         
Sbjct: 19  LNFVREFVLNLFFIFLVLVGVGIWMQVSSSNTSEHAERGALLLDISGVIVDKPSSTSRLS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G+     + I +A+
Sbjct: 79  VIGRQLFGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGADQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V +  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVFAVGDNFSQGQYYLASFANKIYLSPQGSVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLDTVAANRQIPAQQVFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
             + DG       T   A    L+D +    EV + L          K
Sbjct: 259 QAMLDGLTKVDGDTAKYALDNKLVDALASSAEVEKMLTKQFGWSKADK 306


>gi|304322140|ref|YP_003855783.1| protease IV, a signal peptide peptidase [Parvularcula bermudensis
           HTCC2503]
 gi|303301042|gb|ADM10641.1| protease IV, a signal peptide peptidase [Parvularcula bermudensis
           HTCC2503]
          Length = 643

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 120/267 (44%), Gaps = 14/267 (5%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLS 74
                S   D    +A + + G I D  E         +   ++R        A+++ + 
Sbjct: 332 LSMPVSDPHDKDDKIAVVTVAGAIVDGDERSGAAGGDAVALELKRARTRKDVKAVVLRVD 391

Query: 75  SPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           SPGGS +A E I   +  VK   KPVI  +  +AAS GY IS  ++ I ++  ++ GSIG
Sbjct: 392 SPGGSVFASEVIRDEVLAVKAAGKPVIVSMGSLAASGGYWISANADEIWSSPVTITGSIG 451

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP-FSEVNPKAVQMMQDVVDSSYHWFVRL 192
           V   +P  +    ++G+S   V ++P+    +     +     +++Q  V+  Y  F+ L
Sbjct: 452 VFSFFPTFEESFAEIGISTDGVGTTPLTGIYATGVGPLPEAYGEIIQASVEEIYGRFLGL 511

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--- 249
           V+E R +  D    ++ GR+W+G +A+++GL+D +G  ++   S       +    I   
Sbjct: 512 VAEGREMTPDGVDSIAQGRVWSGLDAQRLGLVDRLGTLDDALASAAEKAGLEDYAVIGLT 571

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTI 276
           ++  P + +           +   DT+
Sbjct: 572 RERTPFERFLEGLAGRDDGITGEADTL 598



 Score = 70.0 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 82/226 (36%), Gaps = 15/226 (6%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSS---PGGSAYAGEAIFRAIQKVKNRKP 98
            + G      +L+  +   + DD    +++ L     P GSA     +   ++KV+    
Sbjct: 99  PVEGP-VSLHDLVAVLRSAAEDDRINVVVLDLQGLFIPSGSASKAHYLADEVEKVRAAGK 157

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            +  + +      YL++ A++ I+  +  +V   G      Y+   L+KL V+    +  
Sbjct: 158 QVIAIGDYYTQEQYLVAAAADEILLHDFGMVAIEGYGAYNTYLAEALEKLKVTAHVFRVG 217

Query: 159 PMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTG 215
             KA   PF  ++++ +A +     +   +  +   V   R++         +       
Sbjct: 218 TFKAAVEPFLRNDMSAEAKEANIAYLSDLWSAYADKVDARRDVTVSGGVKEYAAQFPALM 277

Query: 216 AEAK--------KVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
             A         + GL+D +  +      + ++       ++K + 
Sbjct: 278 RAAGNNAAKAALEAGLVDQLMDRPSQIAHIASIVGRDEKSELKGFR 323


>gi|317970537|ref|ZP_07971927.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp.
           CB0205]
          Length = 270

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 72/260 (27%), Positives = 134/260 (51%), Gaps = 5/260 (1%)

Query: 33  DNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            +   +ARIAI G I     + +++ +  + + +   AL++ + SPGG+    + I  A+
Sbjct: 8   KSRRKLARIAIEGPIASGTRKRVLKALREVEKRE-FPALLLRIDSPGGTVGDSQEIHAAL 66

Query: 91  QKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
            +++ +   VI     ++AS G  I  A++ IVA   S+ GSIGV+ +   +   L+++G
Sbjct: 67  LRLREKQCKVIASFGNISASGGVYIGVAADKIVANPGSITGSIGVILRGNNLSRLLERIG 126

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +  ++VKS   K   SP   ++    Q++Q+++DSSY  FV  V+E R +  D+    +D
Sbjct: 127 IQFETVKSGIYKDILSPDRALSSGERQVLQELIDSSYGQFVSAVAEGRGLSEDEVRRFAD 186

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSI 268
           GR+++GA+A+++GL+D +G +E+  +    L        K   +   K  +   +   S 
Sbjct: 187 GRVFSGAQAQELGLVDALGDEEQARRLACELAELDLEKTKPITFGQEKKRFAGVIPGRSQ 246

Query: 269 SSLLEDTIPLMKQTKVQGLW 288
            SL    + L   +  Q LW
Sbjct: 247 ISLALQWLKLELSSSGQPLW 266


>gi|317182638|dbj|BAJ60422.1| protease IV [Helicobacter pylori F57]
          Length = 292

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 126/256 (49%), Gaps = 4/256 (1%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESAPSTPPNLAKLYLNGAIFSTEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGIMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P   + +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++   A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQNRLMEL 252

Query: 241 GVDQSIRKIKDWNPPK 256
              +    ++     +
Sbjct: 253 SKVKKAYWLEKSPMER 268


>gi|158333242|ref|YP_001514414.1| signal peptide peptidase SppA [Acaryochloris marina MBIC11017]
 gi|158303483|gb|ABW25100.1| signal peptide peptidase SppA, 36K type [Acaryochloris marina
           MBIC11017]
          Length = 273

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 134/272 (49%), Gaps = 10/272 (3%)

Query: 30  HVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
             +     +AR+ I+G I  +  + ++E ++ I        L++ + SPGG+      I+
Sbjct: 4   PFKGARKQIARLEIKGAIAGATRKHVLEALKTIEE-KGYPVLLLRIDSPGGTVVDSHEIY 62

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            A+ K++ +  ++     ++AS G  I   +  I+A   ++ GSIGV+ +   ++  LDK
Sbjct: 63  SALIKLREKIKIVASFGNISASGGVYIGMGAEHIMANPGTITGSIGVILRGNNLERLLDK 122

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
           +GVS K +KS P K   +   E+     Q++QD++DSSY  FV +V+E RN+  D     
Sbjct: 123 VGVSFKVIKSGPYKDILAFDRELTEPERQILQDLIDSSYSQFVEIVAEGRNLEVDAVKQF 182

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLKNL 266
           +DGR++TG +A ++GL+D +G +E+       L   D    K       K++W   L   
Sbjct: 183 ADGRVFTGQQALELGLVDRLGTEEDARCWAAELAGLDPEKAKCNTIEEHKSFWSKLLPGS 242

Query: 267 SISSL-----LEDTIPLMKQTKVQGLWAVWNP 293
             SS      + D +     T    LW ++ P
Sbjct: 243 RQSSWSVPPQVADWVNFEIATNGLPLW-LYRP 273


>gi|309790773|ref|ZP_07685320.1| signal peptide peptidase SppA, 36K type [Oscillochloris trichoides
           DG6]
 gi|308227192|gb|EFO80873.1| signal peptide peptidase SppA, 36K type [Oscillochloris trichoides
           DG6]
          Length = 342

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 71/274 (25%), Positives = 119/274 (43%), Gaps = 14/274 (5%)

Query: 33  DNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
                V  I + G I              +++ +I++ ++D    A+++ + SPGG   A
Sbjct: 70  SGLDRVVIIEVSGTIGVASDPFGSSLGQNDILSQIKQAAKDPLVRAVVLRVDSPGGGVVA 129

Query: 83  GEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
              I   + K++   K ++  +   AAS GY IS  +  I A + +  GS+GV+      
Sbjct: 130 SSEIHAELVKLREAGKTLVVSMGATAASGGYYISAPAERIYANKDTFTGSLGVILSLTNY 189

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
               D LG+     KS  +K   SP  E   +   ++Q VVD +Y  FV ++ E R +P 
Sbjct: 190 GEAFDNLGLKSYVYKSGNLKDIGSPLREPTAEENAVLQRVVDEAYQGFVDVIVEGRGLPR 249

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
           ++ L ++DGRI+TGA+A ++GL+D +G  EE       L        +  +    +    
Sbjct: 250 ERVLEIADGRIYTGAQALELGLVDELGNLEEAIAGAMELANL-DSALVVRYTSSSSLRSL 308

Query: 262 DLKNLSISSLLEDTIPL--MKQTKVQGLWAVWNP 293
            L  LS      D + L  +       L   W P
Sbjct: 309 LLSRLSAPQATSDPLGLRNITDPPAPVLEYRWRP 342


>gi|299822749|ref|ZP_07054635.1| signal peptide peptidase SppA [Listeria grayi DSM 20601]
 gi|299816278|gb|EFI83516.1| signal peptide peptidase SppA [Listeria grayi DSM 20601]
          Length = 338

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 68/276 (24%), Positives = 134/276 (48%), Gaps = 19/276 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSS 75
              D    +A +++ G I+D+                 + ++++I  D S   +++ ++S
Sbjct: 56  EEGDGDARIAVLSVDGTIQDTGEASSLFGSSGYNHAAFMRQLKQIEADKSVKGILMYVNS 115

Query: 76  PGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           PGG       I   + ++K ++  PV   +  MAAS GY IS A++ I A++ +L GS+G
Sbjct: 116 PGGGVMESAQIRDKLLEIKKKRKLPVYVSMGSMAASGGYYISTAADKIFASKETLTGSLG 175

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V+ Q       + K+G+S  ++KS   K   S    +  +  ++MQ +++ SY  FV ++
Sbjct: 176 VIMQGYDYSGLMKKVGISDNTIKSGAHKDIMSSSRPMTKEEKKIMQQMINDSYDEFVNVI 235

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           +  R++  +K   ++DGR++ G +AKK+GLID  G +E+  ++L      Q       + 
Sbjct: 236 ATGRHMSKEKVRKIADGRVYDGRQAKKIGLIDQFGYKEDAIRALKKEKGLQDADV---FE 292

Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
             +      L + S+  ++     L+   K+ G  +
Sbjct: 293 YQQTGGIESLFSASVKGIVSPNAELLSFLKMSGNIS 328


>gi|238897852|ref|YP_002923531.1| protease IV, a signal peptide peptidase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465609|gb|ACQ67383.1| protease IV, a signal peptide peptidase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 614

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 137/296 (46%), Gaps = 18/296 (6%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDS 65
            + +++             N   +A I + G I D          ++    I +   +  
Sbjct: 306 FNFISIYEYNLKLKIDPTKNDHQIAVIFVNGMITDGLKTPNNVGGEDAAYEIRQARLNPK 365

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAA 124
             A+I+ ++SPGGS  A E I   +  +   +KP++  +  + AS GY IS  ++ I+A+
Sbjct: 366 IKAVILRVNSPGGSVSASELIRSELATLHEAKKPLVVSMGGLGASGGYWISTPADYIIAS 425

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
            ++L GSIG+       +  L  +GVS   V +SP+ ++ S    ++P+  ++MQ  V++
Sbjct: 426 PSTLTGSIGIFGVINTFENSLKSIGVSTDGVSTSPL-SDISITKNLSPEFSKIMQMNVEN 484

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            Y  FV+LV+ +R+    +   ++ GR+WTG +AK  GLID +G  ++  +    L   +
Sbjct: 485 GYKTFVKLVAAARHQDPKQIDSIAQGRVWTGLDAKNNGLIDQLGDFDDAVEKAAELANLK 544

Query: 245 SI--RKIKDWNPPKNYWFCDL-----KNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
           +    +  D    ++  F  +         + S L D + +  +     + ++ +P
Sbjct: 545 NYQLYQFGDQLNFRDMLFDQINAALPFAFKMQSPLSDIVSIFNRHSPDFVQSLKDP 600



 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 104/301 (34%), Gaps = 44/301 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + F+   +     +L ++   + Y  + +   +       + + G ++D           
Sbjct: 19  INFMRVLVLNLCFLLLIIIGVMTYLHFQNKPLEPVKGALLVDLTGVVQDKPATNTLFRQW 78

Query: 52  ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92
                             ++++ + +   D++   L++SLS          + I +A+ +
Sbjct: 79  SKKLLERDKNKLQENSLFDIVDMLRQAKVDNNINGLVLSLSHLIAIDQPSLQYIGKALLE 138

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            +     I  + +      Y ++  +N I  +    V   G      Y K  +DKL ++ 
Sbjct: 139 FRETGKPIYAIGDSYTQEQYYLASFANKIYLSPQGTVDIHGFATHQLYYKSLIDKLKINS 198

Query: 153 KSVKSSPMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203
              +    K+   PF   +++P A +  Q  +   +  ++ +V+++R++  ++       
Sbjct: 199 HIFRVGTYKSAVEPFMRDDMSPDAREADQRWIHQLWRNYLEVVAKNRHLTAEQFFPAIPE 258

Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPK 256
               L      T   A     +D +  + EV + L           D +   I ++N   
Sbjct: 259 LLSRLEANGGNTAQYALNNKWVDQLASRSEVEKELVRVFGWDQKNEDFNFISIYEYNLKL 318

Query: 257 N 257
            
Sbjct: 319 K 319


>gi|34497270|ref|NP_901485.1| serine protease [Chromobacterium violaceum ATCC 12472]
 gi|34103126|gb|AAQ59489.1| serine protease [Chromobacterium violaceum ATCC 12472]
          Length = 312

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 68/282 (24%), Positives = 113/282 (40%), Gaps = 12/282 (4%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDN-----SPHVARIAIRGQIED----SQELIERI 57
           KI  R   L ++ L           +         H A I + G I       +++I  +
Sbjct: 30  KIFFRLAWLLVIGLIAASVFMRGEEKSGASLTGGGHTAVIELDGAISSENETGKKMISAL 89

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLI 114
           +   RD     +I+  +SPGGS      ++  I+++       PV   V E+ AS  Y I
Sbjct: 90  DHAFRDKGTKGVIIDANSPGGSPVLSGMVYDEIRRLKKLHADIPVYVVVSEVCASGCYYI 149

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I   + S+VGSIGVL         ++KLG+  +   +   KA   PFS  NPK 
Sbjct: 150 AAAADKIFVDKASIVGSIGVLSDGFGFTGAMEKLGIDRRLKTAGENKAMGDPFSPPNPKH 209

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
             + Q ++D  +H F++ V   R     K      G +W G +A  +GL D  G    V 
Sbjct: 210 DAIRQQLLDDIHHQFIQAVETGRGQRLKKDAQTFSGMVWLGEKAIPLGLADGYGTVASVA 269

Query: 235 QSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
           + +          +  D++              + SL +  +
Sbjct: 270 RDVVKAQKTVDFTQQDDFSSRVARRIGVEFAGGVKSLFDAKL 311


>gi|315303364|ref|ZP_07873981.1| putative signal peptide peptidase SppA [Listeria ivanovii FSL
           F6-596]
 gi|313628267|gb|EFR96783.1| putative signal peptide peptidase SppA [Listeria ivanovii FSL
           F6-596]
          Length = 337

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 70/274 (25%), Positives = 130/274 (47%), Gaps = 19/274 (6%)

Query: 37  HVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSPGGSAYA 82
            +A +++ G I+D+ E               ++++E+I  D+S   +++ ++SPGG    
Sbjct: 62  KIAVLSVDGTIQDTGESSSLFGDAGYNHTFFMDQLEQIRDDESIRGVLLYVNSPGGGVME 121

Query: 83  GEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
              I   I ++K  +  P    +  MAAS GY IS  ++ I A++ +L GS+GV+ Q   
Sbjct: 122 SAQIRDKILQIKKERSIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGVIMQGYD 181

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               + KLG+S  ++KS   K   S    +     ++MQ ++D SY+ FV++V+  R + 
Sbjct: 182 YSELMKKLGISDNTIKSGTHKDIMSATRPMTEDEKKIMQSMIDDSYNEFVQVVASGRGMS 241

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
            ++   ++DGRI+ G +AK  GLID  G QE+   +L       +   ++   P     F
Sbjct: 242 EEQVRKIADGRIYDGRQAKANGLIDEFGYQEDALAALKKEEKLSNASVVQYDEPTSFGSF 301

Query: 261 ---CDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
                 K    ++ +   I L    +   +  ++
Sbjct: 302 FSVATQKMTGQNADITQLIKLTGTLQAPRMMYLY 335


>gi|50121267|ref|YP_050434.1| protease 4 [Pectobacterium atrosepticum SCRI1043]
 gi|49611793|emb|CAG75242.1| protease IV [Pectobacterium atrosepticum SCRI1043]
          Length = 616

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 66/267 (24%), Positives = 121/267 (45%), Gaps = 14/267 (5%)

Query: 33  DNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAG 83
            N+  +A +   G I D               +I     D    AL++ ++SPGGS  A 
Sbjct: 321 QNNNQIAVVFANGAIIDGPETPGMVGGDTTAAQIRAARLDPKVKALVLRVNSPGGSVTAS 380

Query: 84  EAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I   +  +    KP++  +  MAAS GY IS  +N I+++ ++L GSIG+       +
Sbjct: 381 ELIRSELMSLRMAGKPIVVSMGGMAASGGYWISTPANAIISSASTLTGSIGIFGVITTFE 440

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+ LGV    V +SP+       S + P+  QMMQ  ++  Y  F+ +V+++R    +
Sbjct: 441 DSLESLGVHTDGVATSPLADLSITKS-LPPEFSQMMQLSIERGYKNFIDIVAQARKKTPE 499

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           +   ++ G +W G++AK+ GL+D +G  ++  +    L       ++  +          
Sbjct: 500 QINEIAQGHVWVGSDAKENGLVDQIGDFDDAVKKAAELAKL-GQYQLNWYAEQPGLLDTM 558

Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWA 289
           L  ++ S      +P+  Q+ +    A
Sbjct: 559 LNQVNASVY--ALLPVAVQSMLPAPVA 583



 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 100/277 (36%), Gaps = 38/277 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + F+ + I   +++  ++    +Y    +  E  +     + + G + D           
Sbjct: 19  LNFIREFILNIFLIALILAGVGIYSQVKTTPEAATKGALLVDLTGVVVDQPTVNNKLRQL 78

Query: 52  ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92
                             ++++ I +   DD+ T +++ LS   G+     + I +A+++
Sbjct: 79  GREFFGASSNRRQENSLFDIVDSIRQAKGDDNITGMVLDLSDFTGADQPSLQYIGKALRE 138

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            ++    I  V +    + Y ++  +N +       V   G      Y K  LDKL V+ 
Sbjct: 139 FRDSGKPIYAVGDSYNQSQYYLASFANTVSLTPQGSVDLHGFATNNLYFKSMLDKLKVTT 198

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203
              +    K+   P+   +++P A       +++ +  ++  VS +R I   +       
Sbjct: 199 NIFRVGTYKSAVEPYLRDDMSPAARDADGRWINALWQQYLNTVSANRQITPQQLFPGATS 258

Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
               L   +  T   A    L+D V  +    QSL  
Sbjct: 259 IIAGLQAVQGDTARYALDNKLVDEVASRSVTEQSLVK 295


>gi|114567921|ref|YP_755075.1| periplasmic serine protease [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338856|gb|ABI69704.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 297

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 73/272 (26%), Positives = 140/272 (51%), Gaps = 15/272 (5%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-----------ELIERIERISRDDSA 66
           +++  V         + +  +A + I G I               +++E I +  + +  
Sbjct: 20  LSIRAVNRLDHGSTREGTATIAVVQINGPISGVSSWLENSSSTAGDIMEAIRKAGKREDI 79

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAE 125
            A++V + SPGGSA A + I   +++++ + KPV+T + ++ AS GY I+C+++ IVA  
Sbjct: 80  KAVVVRIDSPGGSAGASQEIAMELERLREKGKPVVTSMGDVCASGGYWIACSTDHIVANG 139

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
            SL GSIGV+ Q   ++    KLG+  +++KS   K   S   E++ +  +++QD+VD S
Sbjct: 140 ASLTGSIGVIMQLSNLEGLYGKLGIRNQTIKSGEHKDMGSTSRELSAEEEKILQDLVDDS 199

Query: 186 YHWFVRLVSESRNIPY--DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
           Y  F+  V + R      DK L ++DGRI+TG +A ++GL+D +G   +  +    +   
Sbjct: 200 YQQFLEQVQKGRQEKIAADKLLEIADGRIFTGKQALELGLVDSLGNYYDAVRQAEKMAGI 259

Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
           +   K++  N   ++W     ++   +L +  
Sbjct: 260 KGESKLEVINAF-SWWERLKLDMFNPNLFQQG 290


>gi|253996198|ref|YP_003048262.1| peptidase S49 [Methylotenera mobilis JLW8]
 gi|253982877|gb|ACT47735.1| peptidase S49 [Methylotenera mobilis JLW8]
          Length = 332

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 66/275 (24%), Positives = 117/275 (42%), Gaps = 14/275 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERIS 61
             K+      L+ L +++       +    H A I I G I       +  +I  ++   
Sbjct: 46  FFKSLTFGYLLIFLLMLFGIMGGDKKSLEAHTALIEINGVIQAGGDVTADAVISSLKEAY 105

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAGYLISCAS 118
            +     +I+ ++SPGGS      I   I++   +    PV   V ++ AS GY I+ A+
Sbjct: 106 DNKGTKGIILRVNSPGGSPVQAGIINDEIRRQKTLHPSIPVYAVVEDICASGGYYIAAAA 165

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I   + S+VGSIGVL         + K+GV  + + +   KA   PFS VNP   ++ 
Sbjct: 166 DKIYVDKASIVGSIGVLMDGYGFTEAMKKVGVERRLMTAGENKAMLDPFSPVNPHHQELA 225

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           Q +++  +  F  +V + R     +T     G  W+G ++ K+GL D +G  E V + + 
Sbjct: 226 QAMLNEIHEQFKTVVRQGRGARLKETPETFSGLFWSGEQSIKIGLADGMGSAEYVAREVI 285

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273
                     I D+    ++     K +  S+   
Sbjct: 286 KQ------EDIVDFTYQDDFASRIAKRIGASASAA 314


>gi|149176651|ref|ZP_01855263.1| Periplasmic serine protease [Planctomyces maris DSM 8797]
 gi|148844530|gb|EDL58881.1| Periplasmic serine protease [Planctomyces maris DSM 8797]
          Length = 603

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 125/289 (43%), Gaps = 19/289 (6%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE---------------DSQELIERIERI 60
            +  + ++    SS    + P +A I   G I                 S   I+ + + 
Sbjct: 288 LIKLMDLLAGIDSSQRIGSGPRIAVIYATGAIMSGSSAQGSLLGGNVLGSDTFIKAVHKA 347

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
           + DD   A++V + SPGGSA A + ++RA+++    KP++  + ++AAS GY IS  +  
Sbjct: 348 ADDDQVKAIVVRVDSPGGSALASDLMWRALEE--AGKPIVVSMGDVAASGGYYISMGAER 405

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           I A   +L GSIGV+     ++    K+G++   +         SP +         +  
Sbjct: 406 IFAEPGTLTGSIGVVGGKLAIEGLYKKIGITTSVISRGSNSGTFSPLNGFTESERVAVTG 465

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           ++++ Y  F    +  R + Y+K   L+ GR++TG  A K+GL+D +G  +E       L
Sbjct: 466 MLNAIYKQFTEKAAAGRKMDYNKLEALARGRVYTGEMALKLGLVDQLGTLDEAIDHARKL 525

Query: 241 GVDQSIRKIKDWNPPK--NYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           G  +   K +    P+  + +      +   +     I  M  +   GL
Sbjct: 526 GKIKEGEKFEKLILPRPTSPFEQIFGPVDGDTQQHQQISRMLDSLAPGL 574



 Score = 99.3 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 108/245 (44%), Gaps = 3/245 (1%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
              +++ R+E+ S D S T +++              + +AIQKV+     +    E   
Sbjct: 68  SLSKVVSRLEKASEDKSLTGVVLHFKGTELGWAKLNELRQAIQKVRKSDKKVFAWIETGM 127

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
           +  YLI+ A + IV  E++ +  +G+  +  + K   D L +    ++    K+   P++
Sbjct: 128 TKDYLIASACDQIVMPESASLILLGLRAEVSFYKNLFDILDIKPDILRVGKYKSAAEPYT 187

Query: 169 --EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
             E++    + M+ ++D+ +     ++S SR +  +K     +G  +  AEAKK+GLID 
Sbjct: 188 RTEMSEAFREEMEALLDNYFGQITGMISASRGLSAEKVEAAINGGPYMAAEAKKLGLIDH 247

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPK-NYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           +  ++++ + L        ++ IK +   + +  F  +  L     L   I   ++    
Sbjct: 248 IAYEDQLPKLLTGEDSKNEVKLIKKYAKKRADTDFSGIAGLIKLMDLLAGIDSSQRIGSG 307

Query: 286 GLWAV 290
              AV
Sbjct: 308 PRIAV 312


>gi|148980157|ref|ZP_01815908.1| protease IV [Vibrionales bacterium SWAT-3]
 gi|145961375|gb|EDK26682.1| protease IV [Vibrionales bacterium SWAT-3]
          Length = 607

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 74/274 (27%), Positives = 124/274 (45%), Gaps = 16/274 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
             +   S  VA I   G I D                + +   DD   A+++ + SPGGS
Sbjct: 309 PDMNSESHDVAVIVASGAIMDGKQPRGTVGGDTTAALLRQARNDDKVKAVVLRVDSPGGS 368

Query: 80  AYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           A+A E I   I+ + +  KPV+  +  +AAS GY IS  ++ I+A  T+L GSIG+    
Sbjct: 369 AFASEVIRNEIEAIKQAGKPVVVSMSSLAASGGYWISMGADKILAQPTTLTGSIGIFSVI 428

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  L+ +GV    V +SP        + +   A    Q  ++  Y  F+ LV E+R 
Sbjct: 429 TTFEKGLNDIGVYTDGVGTSPFSGLGIT-TGLTEGAKDAFQMGIEHGYRRFIGLVGENRG 487

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256
           +  D    ++ GR+WTG +A + GL+D +G  ++   S  +L   +  +I  +++     
Sbjct: 488 MDVDAVDKIAQGRVWTGQDAMQNGLVDEIGDFDDAIASAASLAELESYNIYWVEEPLSAT 547

Query: 257 NYWFCDLKN---LSISSLLEDTIPLMKQTKVQGL 287
             +  +  N   +SI   ++  IP   Q   Q L
Sbjct: 548 EQFIQEFMNQVQMSIGLDIQSMIPSSLQPVTQQL 581



 Score = 92.8 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 96/282 (34%), Gaps = 37/282 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + FV   +     +LS+  +  VYF S ++           + + G I +          
Sbjct: 10  ITFVRVALVNLIFLLSIAVIYFVYFHSDTAPPTVPQQSALVLNLSGPIVEQSRYINPMDS 69

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            +++E I     DD+ T ++++    P  +      I +A+ + 
Sbjct: 70  VTGSLLGKDLPKENILFDIVETIRYAKDDDNVTGIVLALKELPETNLTKLRYIAKALNEF 129

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     I  V +    + Y ++  +  +  +    V   G      Y K  L+KL V+  
Sbjct: 130 KASGKPIYAVGDFYNQSQYYLASYATKVYMSPDGGVLLKGYSAYSLYYKTLLEKLDVNTH 189

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-------- 203
             +    K+   PF   +++  A +     +   +  +V  VS +R I            
Sbjct: 190 VFRVGTYKSAIEPFIRDDMSDAAKESASRWLGQLWSAYVDDVSNNRQIDAKTLNPSMDTF 249

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
              L          A+K+GL+D +  +++V   L  +     
Sbjct: 250 LNELESVDGDIAKLAEKLGLVDELATRQQVRLELADVFGSDG 291


>gi|67925053|ref|ZP_00518433.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Crocosphaera
           watsonii WH 8501]
 gi|67853100|gb|EAM48479.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Crocosphaera
           watsonii WH 8501]
          Length = 596

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 110/236 (46%), Gaps = 9/236 (3%)

Query: 32  EDNSPHVARIAIRGQIEDSQELIERI---------ERISRDDSATALIVSLSSPGGSAYA 82
             ++  +A + + G I D     E+I          +I  D    A+++ ++SPGGSA  
Sbjct: 304 NSSNKKIAVVYLEGSIVDGVGTREQIGTSRFEKILRKIREDKQVKAVVLRINSPGGSATG 363

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            + I R +Q ++ +KPVI  +  +AAS GY I+     I A   ++ GSIGV      ++
Sbjct: 364 SDIILREVQLIQEKKPVIISMGNVAASGGYWIATGGEHIFAQPNTITGSIGVFGLLFNIQ 423

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
              +  G++   VK+       +       + + + Q  V+  Y  F+  V+ESR++  +
Sbjct: 424 EVANNNGITWDVVKTGKFADLGTVRRPKTEQELAIYQKSVNRVYDLFLEKVAESRDLAKE 483

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           K   ++ G++W+G  AK +GL+D  GG +   Q         +  +IK +     +
Sbjct: 484 KVADIAQGKVWSGKTAKNIGLVDSFGGLDAAIQYAVEQAELGTDWEIKSYPSSPRF 539



 Score = 93.5 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 104/265 (39%), Gaps = 25/265 (9%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------- 51
            +     + SLV L +   S  +        V  + +  +I D +               
Sbjct: 19  FLFATLGVSSLVILLITLASVDTEPTIKDKSVLVLDLSTEIRDREPMVNISDILSDRQRS 78

Query: 52  -----ELIERIERISRDDSATALIVSLSSPGGSAYAG--EAIFRAIQKVKNRKPVITEVH 104
                ++++ IE+ S+D    A+ +  S+    +       I  A+ K K     I    
Sbjct: 79  VLTLNQVVKNIEKASKDSRIEAIFLDGSNASAGSGYANFAEIREALIKFKESGKKIIAYD 138

Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164
                  Y ++  ++ ++     L+   G+  +  +     DK G+ ++ V+    K+  
Sbjct: 139 VTLTEQEYYLTSLADTLIVHPMGLMELNGIGTESLFWTGAFDKYGIGVQVVRVGDYKSAV 198

Query: 165 SPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKV 221
            P++  E++ +  Q +Q ++ S ++ +++ V ESR I  +    ++D   +    EA+ +
Sbjct: 199 EPYTRTELSAENRQQLQVLLGSIWNNYLQEVGESRQINPNDLQKVADNQGVLVPEEAQNL 258

Query: 222 GLIDVVGGQEEVWQSLYALGVDQSI 246
            LID +  +++    L  +  +Q  
Sbjct: 259 KLIDQIDYRDKAISILQEITGNQEK 283


>gi|167570707|ref|ZP_02363581.1| peptidase, U7 family protein [Burkholderia oklahomensis C6786]
          Length = 332

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 116/268 (43%), Gaps = 14/268 (5%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIERISRDDSATALIVSLSSPGGS 79
            S       +  H A + I G+I      +++++   ++    D     +++ ++SPGGS
Sbjct: 68  VSGDGGKLASGRHTAVVTIDGEIAASTNANAEDINSALDSAFEDSGTAGVVLRINSPGGS 127

Query: 80  AYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
                 ++  I++++ +   KP+   V +M AS GY I+ A++ I   + S+VGSIGVL 
Sbjct: 128 PVQAGIVYDEIRRLRKKYPAKPLYVVVTDMCASGGYYIASAADKIYVDKASVVGSIGVLM 187

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                   + KLGV  +   S   K    PFS   PK     Q+++D  +  F++ V + 
Sbjct: 188 DGFGFTGLMGKLGVERRLHTSGENKGFFDPFSPETPKMDAHAQEMLDEIHEQFIKAVKDG 247

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R      +  +  G  WTGA++ ++GL D  G  + V + +           + D+   +
Sbjct: 248 RGARLHDSPDIFSGLFWTGAKSIELGLADDFGTTDTVARDVLK------APDLVDYTVKE 301

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKV 284
           +      +    +         +  +++
Sbjct: 302 SLTNRVARRFGAAVGSAALKAAVAGSEL 329


>gi|167563547|ref|ZP_02356463.1| peptidase, U7 family protein [Burkholderia oklahomensis EO147]
          Length = 332

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 116/268 (43%), Gaps = 14/268 (5%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIERISRDDSATALIVSLSSPGGS 79
            S       +  H A + I G+I      +++++   ++    D     +++ ++SPGGS
Sbjct: 68  VSGDGGKLASGRHTAVVTIDGEIAASTNANAEDINSALDSAFEDSGTAGVVLRINSPGGS 127

Query: 80  AYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
                 ++  I++++ +   KP+   V +M AS GY I+ A++ I   + S+VGSIGVL 
Sbjct: 128 PVQAGIVYDEIRRLRKKYPAKPLYVVVTDMCASGGYYIASAADKIYVDKASVVGSIGVLM 187

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                   + KLGV  +   S   K    PFS   PK     Q+++D  +  F++ V + 
Sbjct: 188 DGFGFTGLMGKLGVERRLHTSGENKGFFDPFSPETPKMDAHAQEMLDEIHEQFIKAVKDG 247

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R      +  +  G  WTGA++ ++GL D  G  + V + +           + D+   +
Sbjct: 248 RGARLHDSPDIFSGLFWTGAKSIELGLADDFGTTDTVARDVLK------APDLVDYTVKE 301

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKV 284
           +      +    +         +  +++
Sbjct: 302 SLTNRVARRFGAAVGSAALKAAVAGSEL 329


>gi|172037525|ref|YP_001804026.1| protease IV, 67K long form [Cyanothece sp. ATCC 51142]
 gi|171698979|gb|ACB51960.1| protease IV, 67K long form [Cyanothece sp. ATCC 51142]
          Length = 597

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 60/264 (22%), Positives = 118/264 (44%), Gaps = 12/264 (4%)

Query: 30  HVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPGGSA 80
               ++  +A + + G I D         +      + +I  ++   A+++ ++SPGGSA
Sbjct: 303 TESSSNNKIAVVYLEGAIVDGVGNREQVGATRFARILRKIRDNEQVKAVVIRINSPGGSA 362

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
            A + I R IQ ++  KPVI  +  +AAS GY I+     I A   ++ GSIGV      
Sbjct: 363 TASDIILREIQLIQETKPVIISMGNVAASGGYWIATGGEHIFAQPNTITGSIGVFGVLFN 422

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           ++   +  G++   VK+       +       + + + Q  V+  Y  F+  V++SR++ 
Sbjct: 423 IQEIANNNGITWDVVKTGKFADLGTATRPKTEQELAIYQKSVNRVYDLFLEKVAKSRDLS 482

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY-- 258
            +K + ++ GR+W+G  AKK+GL+D  GG                  +++++   + +  
Sbjct: 483 KEKVVNIAQGRVWSGETAKKIGLVDSFGGLGAAIDYAVEKTELGKDWQVEEYPTSQGFAE 542

Query: 259 -WFCDLKNLSISSLLEDTIPLMKQ 281
            +     +  I        PL ++
Sbjct: 543 LFIKKTLDEDIKITTNTVDPLTEE 566



 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 110/257 (42%), Gaps = 27/257 (10%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------------ELIE 55
           S+V L +   S  S        V    +  +I+D +                    ++I+
Sbjct: 29  SVVILLITLASVDSEPTIKDQSVLVFDLSTEIKDREPLVNIGDILSGKESSVLTLSQVIK 88

Query: 56  RIERISRDDSATALIVSLSSP---GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
            IE+ S+DD   A+ +  S+     G A     I +A+ + K     I       +   Y
Sbjct: 89  NIEKASKDDRIKAIFLDGSNASSGSGYANFS-EIRQALIEFKESGKKIIAYDVTISEQEY 147

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEV 170
            ++  ++ ++     L+   G+  +  ++   L+K G+ ++ V+    K+   P+  +++
Sbjct: 148 YLTSLADTLIVNPMGLMEFNGIGTEPLFLTGALNKYGIGVQVVRVGEYKSGVEPYTRTQL 207

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGG 229
           +P+  Q ++ ++ + ++ F++ V ++R I  +    ++D   +    EAK++ L+D V  
Sbjct: 208 SPENRQQLEVLLGNIWNNFLQDVGKTRQIKVNNLQSIADTQGLLYPQEAKELNLVDQVDY 267

Query: 230 QEEVWQSLYALGVDQSI 246
           +++    L  +  ++  
Sbjct: 268 RDKAISILKEITDNKEE 284


>gi|53714736|ref|YP_100728.1| protease IV [Bacteroides fragilis YCH46]
 gi|52217601|dbj|BAD50194.1| protease IV [Bacteroides fragilis YCH46]
          Length = 592

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 80/280 (28%), Positives = 140/280 (50%), Gaps = 19/280 (6%)

Query: 2   EFVLKKIKTRYVM-----LSLVTLTVVYFSWSSHVEDNSPHV-ARIAIRGQIED------ 49
             V   +KT   +     L ++ L  +     +  +D S ++ A     G+I D      
Sbjct: 267 NDVRDYLKTLVKIDEDDRLPILGLEEMVNIKKNVPKDKSGNILAVYYASGEITDYAGSAA 326

Query: 50  ------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103
                   ++I  + ++  DD   A+++ ++SPGGSA+A E I+ A++++K +KPVI  +
Sbjct: 327 SDEGIIGSKMIRDLRKLKEDDDVKAVVLRVNSPGGSAFASEQIWHAVKELKAKKPVIVSM 386

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
            + AAS GY ISCA++ I+A  T+L GSIG+    P VK   +K+G++   VK++     
Sbjct: 387 GDYAASGGYYISCAADSIIAEPTTLTGSIGIFGMIPNVKGLTEKIGLTYDVVKTNQFSDF 446

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
            +    VN     ++Q ++   Y  FV   +E R++  DK   +++GR+WTG  AKK+GL
Sbjct: 447 GNLMRPVNSDERALLQMMIGQGYDLFVSRCAEGRHMSKDKIEKIAEGRVWTGEMAKKIGL 506

Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
           +D +GG  +  +        +    I  +   K+     L
Sbjct: 507 VDELGGIGKALEIAAQKADLKG-YSIISYPAKKDILSTLL 545



 Score = 94.3 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 99/264 (37%), Gaps = 26/264 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49
             ++ +VTL  +  S  +        V  + ++G +                        
Sbjct: 22  LFIIGVVTLVGIISSSDTETVVKKNSVMMLDLKGTLVERTQESLEGLLGKFTGETADTYG 81

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
             +++  I++   +D+   + +  S    S  + +AI +A+   K     +    +    
Sbjct: 82  LDDILASIKKAKVNDNIKGIYIQASWLDASYASLQAIRKALDDFKESGKFVVAYSDNYTQ 141

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y +S  ++ ++     ++   G+     + K  L KLG+ ++  K    K+   PF  
Sbjct: 142 GLYYLSSVADKVMLNPKGMIEWRGLASAPIFYKDLLQKLGIEMQVFKVGTYKSAVEPFTA 201

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225
           +E++P   + +   + S ++  +  VS SR I  D   + +D     +   E+ K GL D
Sbjct: 202 TEMSPANREQVTAFIGSIWNQILDGVSASRKIGKDSLNMYADRMLMFYPSDESVKCGLAD 261

Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249
            +  Q +V   L  L       ++
Sbjct: 262 TLIYQNDVRDYLKTLVKIDEDDRL 285


>gi|332762480|gb|EGJ92745.1| signal peptide peptidase SppA, 67K type [Shigella flexneri 4343-70]
          Length = 594

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 295 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 354

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   K V+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 355 VTASEVIRAELAAARAAGKSVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 414

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 415 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 473

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 474 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 532

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 533 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 561



 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 98/280 (35%), Gaps = 39/280 (13%)

Query: 8   IKTRYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQE-------------- 52
           +   ++ L LV + +    S     E  S     + I G I D  +              
Sbjct: 3   LNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFSKLSRQLLG 62

Query: 53  -------------LIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKP 98
                        ++  I +   D + T +++ L +  G      + I +A+++ ++   
Sbjct: 63  ASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGK 122

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL VS    +  
Sbjct: 123 PVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVG 182

Query: 159 PMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLS 208
             K+   PF   +++P A +     +   +  ++  V+ +R IP  +           L+
Sbjct: 183 TYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGAQGLLEGLT 242

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                T   A +  L+D +    E+ ++L          K
Sbjct: 243 KTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 282


>gi|145642068|ref|ZP_01797639.1| protease IV [Haemophilus influenzae R3021]
 gi|145273248|gb|EDK13123.1| protease IV [Haemophilus influenzae 22.4-21]
          Length = 308

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 127/256 (49%), Gaps = 14/256 (5%)

Query: 36  PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             +A + + G I D +          +   + +   D+S  A+I+ ++SPGGSA+A E I
Sbjct: 15  NKIAVVNVEGTIIDGESDEENAGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEII 74

Query: 87  FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
            +  + ++   KPVI  +  MAAS GY IS  ++ I+A   ++ GSIG+   +P  +  +
Sbjct: 75  RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFTMFPTFENSI 134

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV+   V ++ +    S FS +      + Q  ++  Y  F+ +VS+ R +   +  
Sbjct: 135 KKIGVNADGVSTTELANT-SAFSPLAKPVQDIYQTEIEYGYDRFLEIVSKGRQLSKTQVD 193

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L+ G++W G++A + GL+D +G   E       L   +    ++D++     WF D   
Sbjct: 194 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 250

Query: 266 LSISSLLEDTIPLMKQ 281
             IS+LL DT    ++
Sbjct: 251 GLISTLLRDTKKGAQE 266


>gi|60682742|ref|YP_212886.1| putative protease IV [Bacteroides fragilis NCTC 9343]
 gi|60494176|emb|CAH08968.1| putative protease IV [Bacteroides fragilis NCTC 9343]
          Length = 592

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 80/280 (28%), Positives = 140/280 (50%), Gaps = 19/280 (6%)

Query: 2   EFVLKKIKTRYVM-----LSLVTLTVVYFSWSSHVEDNSPHV-ARIAIRGQIED------ 49
             V   +KT   +     L ++ L  +     +  +D S ++ A     G+I D      
Sbjct: 267 NDVRDYLKTLVKIDEDDRLPILGLEEMVNIKKNVPKDKSGNILAVYYASGEITDYAGSAA 326

Query: 50  ------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103
                   ++I  + ++  DD   A+++ ++SPGGSA+A E I+ A++++K +KPVI  +
Sbjct: 327 SDEGIIGSKMIRDLRKLKEDDDVKAVVLRVNSPGGSAFASEQIWHAVKELKAKKPVIVSM 386

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
            + AAS GY ISCA++ I+A  T+L GSIG+    P VK   +K+G++   VK++     
Sbjct: 387 GDYAASGGYYISCAADSIIAEPTTLTGSIGIFGMIPNVKGLTEKIGLTYDVVKTNQFSDF 446

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
            +    VN     ++Q ++   Y  FV   +E R++  DK   +++GR+WTG  AKK+GL
Sbjct: 447 GNLMRPVNSDERALLQMMIGQGYDLFVSRCAEGRHMSKDKIEKIAEGRVWTGEMAKKIGL 506

Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
           +D +GG  +  +        +    I  +   K+     L
Sbjct: 507 VDELGGIGKALEIAAQKADLKG-YTIISYPAKKDILSTLL 545



 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 99/264 (37%), Gaps = 26/264 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49
             ++ +VTL  +  S  +        V  + ++G +                        
Sbjct: 22  LFIIGVVTLVGIISSSDTETVVKKNSVMMLDLKGTLVERTQESLEGLLGKFTGETADTYG 81

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
             +++  I++   DD+   + +  S    S  + +AI +A+   K     +    +    
Sbjct: 82  LDDILASIKKAKEDDNIKGIYIQASWLDASYASLQAIRKALDDFKESGKFVVAYSDNYTQ 141

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y +S  ++ ++     ++   G+     + K  L KLG+ ++  K    K+   PF  
Sbjct: 142 GLYYLSSVADKVMLNPKGMIEWRGLASAPIFYKDLLQKLGIEMQVFKVGTYKSAVEPFTA 201

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225
           +E++P   + +   + S ++  +  VS SR I  D   + +D     +   E+ K GL D
Sbjct: 202 TEMSPANREQVTAFIGSIWNQILDGVSASRKIGKDSLNMYADRMLMFYPSDESVKCGLAD 261

Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249
            +  Q +V   L  L       ++
Sbjct: 262 TLIYQNDVRDYLKTLVKIDEDDRL 285


>gi|72160983|ref|YP_288640.1| signal peptide peptidase A [Thermobifida fusca YX]
 gi|71914715|gb|AAZ54617.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49
           [Thermobifida fusca YX]
          Length = 569

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 99/246 (40%), Gaps = 5/246 (2%)

Query: 45  GQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH 104
           G +  S  +        +D +  A++  ++SPGGS  A + I+R +         +    
Sbjct: 305 GAVMGSDTVAAAFRAARKDPNVRAVVFRVNSPGGSYTASDVIWREVVLTSQAGTPVVVSM 364

Query: 105 EMAASAGYLISCASNIIVAAET-SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
              A +G     A   ++ A+  ++ GSIGV+     +   L KLGV+   + S      
Sbjct: 365 GDVAGSGGYFIAAGADVIIAQPGTITGSIGVVVGKAVLSTMLAKLGVTSDWIDSGNHAGM 424

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
            SP    +    + +  ++D  Y  FV  V+E R +  D+   ++ GRIWTG +A + GL
Sbjct: 425 FSPNRPFSESEWERVNTMLDHIYDDFVGKVAEGRKMTRDQVHEVAKGRIWTGQDACERGL 484

Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
           +D VGG E   +     G       ++ + P        +      S  + T     +  
Sbjct: 485 VDEVGGLETAIRIARDRGGLPPSAPVRHF-PQLGPLERLIP---AESSEDRTAQAQLRLS 540

Query: 284 VQGLWA 289
             G  A
Sbjct: 541 GWGPLA 546



 Score = 82.7 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 17/245 (6%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-----PVITEVHEM 106
           +++E I R + D    ALIV + S        + + +A+   +           +     
Sbjct: 53  DIVEGIRRGAHDPRVKALIVKIGSQSLGMALVQELRQAVAMFRRAGKHTVAWSESFGEFG 112

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
             S  Y ++ A + I    +  VG  G+  +  +    L+KLGV  +       K   + 
Sbjct: 113 PGSLPYYLATAFDEIALLPSGSVGLTGLRVENLFFAEALEKLGVDYQGGARHEYKTALNM 172

Query: 167 FSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLI 224
           F+E        +    +V+S     V  +S  R++  ++   L D   +   EA + GL+
Sbjct: 173 FTERGFTDAHREASGRIVESLTEQLVAGISSGRDLSEERVRELIDQGPFLATEAVEAGLV 232

Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
           D V  ++E++  L              +                +  L D +P+ +++  
Sbjct: 233 DKVAYRDEIYSDLLDRYSADGTPAHLQYVSRYQR----------TRSLADRVPVAQRSGY 282

Query: 285 QGLWA 289
             L +
Sbjct: 283 VALIS 287


>gi|148240231|ref|YP_001225618.1| periplasmic serine proteases (ClpP class) [Synechococcus sp. WH
           7803]
 gi|147848770|emb|CAK24321.1| Periplasmic serine proteases (ClpP class) [Synechococcus sp. WH
           7803]
          Length = 270

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 5/252 (1%)

Query: 41  IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK- 97
           IAI G I  S  + +++ +  +   +   AL++ + SPGG+    + I  A+ +++ +  
Sbjct: 16  IAIEGAISGSTRRRVLKALREVQERE-FPALLLRIDSPGGTVGDSQEIHAALLRLRAKGC 74

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
            V+     ++AS G  +  A+  IVA   ++ GSIGV+ +   +   L+K+G+  ++VKS
Sbjct: 75  RVVASFGNISASGGVYVGVAAETIVANPGTITGSIGVILRGNNLSELLNKIGIRFETVKS 134

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
              K   SP   ++    Q++QD++DSSY  FV  V+E R +  D     +DGR+++GA+
Sbjct: 135 GAYKDILSPDRALSADERQLLQDLIDSSYDQFVAAVAEGRGLEPDAVKAFADGRVFSGAQ 194

Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQSIR-KIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
           AK++GL+D +G +E+       L      R K      P+      L   ++ S ++  +
Sbjct: 195 AKELGLVDELGDEEQARVLAARLADLDEERCKPVTLGKPRKSLLQGLPGSALLSAVQQRL 254

Query: 277 PLMKQTKVQGLW 288
               +   Q LW
Sbjct: 255 SAELELSGQLLW 266


>gi|256810518|ref|YP_003127887.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus fervens
           AG86]
 gi|256793718|gb|ACV24387.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus fervens
           AG86]
          Length = 311

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 73/285 (25%), Positives = 145/285 (50%), Gaps = 19/285 (6%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIE---------------DSQELIERIERISRD 63
            + ++  S  +        +A++ +  +I                D++  I  ++ + +D
Sbjct: 23  IVLIMSLSGENINLFGGERIAKVYLCNEIYFDYNQDSGLFMQQKKDARYYINLLDDLEKD 82

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
           DS   +++ ++SPGG   A E + R ++++ N+KPV+  V  + AS  Y++S  ++ IVA
Sbjct: 83  DSVKGVLLVVNSPGGEVIASEKLARKVEELANKKPVVVYVEGLDASGAYMVSAPADYIVA 142

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
            + S+VGSIGV     +    + KLGV++ ++K+   K   SPF  +  +  + +Q +++
Sbjct: 143 EKHSIVGSIGVRMDVMHYYGLMKKLGVNVTTIKAGKYKDIGSPFRPMTEEEREYLQKMIN 202

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
            +Y  FV  V+E R +  + TL ++DG+I++G +AKKVGL+D VG +E   + L  L   
Sbjct: 203 ETYMDFVEWVAEHRGLSINYTLKIADGKIYSGEDAKKVGLVDEVGTEETALKKLEELANI 262

Query: 244 QSIRKIKDWNPPKNYWFCDL---KNLSISSLLEDTIPLMKQTKVQ 285
            +  +I ++   +N     L       I   + + +  M++   +
Sbjct: 263 SN-PEIVEYGLEENRGLFGLTYYLGYGIGKGIGEVLYGMEKVNER 306


>gi|260776353|ref|ZP_05885248.1| protease IV [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607576|gb|EEX33841.1| protease IV [Vibrio coralliilyticus ATCC BAA-450]
          Length = 616

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 125/272 (45%), Gaps = 13/272 (4%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSP 76
           +     + +   +A +   G I D            +   + +   DD   A+++ + SP
Sbjct: 315 TMKPKFDLSQDDIAIVVASGAIMDGSQPRGATGGDTVAALLRQARNDDKIKAVVLRVDSP 374

Query: 77  GGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           GGSA+A E I   I+ +K   KPV+  +  +AAS GY IS  ++ IVA  T+L GSIG+ 
Sbjct: 375 GGSAFASEVIRNEIEALKETGKPVVASMSSLAASGGYWISMGADRIVAQPTTLTGSIGIF 434

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                 +  L+KLGV    V +SP  +     + ++  A    Q  ++  YH F+ LVSE
Sbjct: 435 SVITTFEKGLNKLGVYTDGVGTSPF-SGVGITTGLSDGAADAFQMGIEHGYHRFIGLVSE 493

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI--RKIKDWN 253
           SR IP      ++ GR+WTG +A K+GL+D +G  ++  +    L   +      +++  
Sbjct: 494 SREIPLKDMDSIAQGRVWTGQDAAKLGLVDKMGDFDDAVKLAAELAKVEDYNLYWVEEPL 553

Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
            P   +  D  N    +L  D   L+      
Sbjct: 554 SPAEQFIQDFMNQVKVNLGVDASALLPAALQP 585



 Score = 93.9 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 109/336 (32%), Gaps = 46/336 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVED-NSPHVARIAIRGQIEDSQ-------- 51
           + F+   +     + ++  +  +Y S  S V          + I G I +          
Sbjct: 19  ITFIRLALVNLIFLATIGIIYFIYTSAESPVPSVPQESALVLNISGPIVEQSRYVNPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93
                            +++E I     D   T ++++L   P  +      I +A+ + 
Sbjct: 79  FTGSLFGQDMPRENVLFDIVESIRHAKDDPKITGIVLALRDMPETNLTKLRYIAKALNEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     I    E    + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 139 KASGKPIYAAGEFYNQSQYYLASYADKIYLAPDGAVLIKGYSAYSMYYKTLLEKLDVNTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV----- 206
             +    K+   PF   +++  A +     +   +  +V  V+ +R +            
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAAKESASRWLGQLWGAYVDDVATNRQVSAKTLNPTMEEF 258

Query: 207 ---LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDW-------NP 254
              L +      A + ++GL+D +  +++V   L  +     +      D+        P
Sbjct: 259 LGLLKEQDGDLAALSLELGLVDELATRQQVRSDLTEVFGSNGEDSYNYVDYYEYQTTMKP 318

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
             +    D+  +  S  + D       T    + A+
Sbjct: 319 KFDLSQDDIAIVVASGAIMDGSQPRGATGGDTVAAL 354


>gi|192362443|ref|YP_001982749.1| signal peptide peptidase SppA, 67K type [Cellvibrio japonicus
           Ueda107]
 gi|190688608|gb|ACE86286.1| signal peptide peptidase SppA, 67K type [Cellvibrio japonicus
           Ueda107]
          Length = 635

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 140/283 (49%), Gaps = 15/283 (5%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATA 68
           V++        S V      V  I   G I+D         S+ +++ + +   +D+  A
Sbjct: 323 VSVKRYLADVRSQVSPEPNLVGLITAVGGIQDGSQRPGSIGSESMLKLLRQAKENDNLKA 382

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETS 127
           L++ + S GGSA+A E I   I  ++++   +   +  +AAS GY I+ AS+ I A  T+
Sbjct: 383 LVIRVDSGGGSAFASEIIRTEINALRDKGIPVFISMGSVAASGGYWIATASDEIWAQPTT 442

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           + GSIGV   +P ++  L  +G++   + ++ +    S    ++PK   ++Q  VD+ Y 
Sbjct: 443 ITGSIGVFGAFPTLEKTLGNMGITSDGIATTELAGSMSISRPLSPKMGDIVQQSVDNIYQ 502

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F+ LV+E+R    ++   ++ G +WTGA AK++GL+D +G  E+   ++          
Sbjct: 503 RFIHLVAETRQQTPEQIDAVAQGHVWTGARAKELGLVDNLGTLEDTIAAVAERAGL-ETY 561

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
           +++   PP +     L++L+ +S        +  + ++ L ++
Sbjct: 562 RVELVEPPLSPREELLRSLAENS----AWGFIPHSLLESLASL 600



 Score = 82.7 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 95/244 (38%), Gaps = 11/244 (4%)

Query: 51  QELIERIERISRDDSATALIVSLSS-PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           ++LIE I++ + D   + +++      GG       I +A++  K     I       + 
Sbjct: 110 RDLIEAIQQAATDKRVSMIVIEPGKLLGGGISKINEIGQALEAFKASGKKIIAASHYYSQ 169

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y ++  ++ I   +   V   G      Y K  LDKLG++I + +S   K    PF  
Sbjct: 170 DQYYLASFADDIYLHDMGSVEVTGYGRYMAYYKTALDKLGITIHAFRSGKYKDFLEPFLR 229

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--------RIWTGAEAK 219
             ++ ++ +     +++ +H + + V ++RN+         +         R  +   A 
Sbjct: 230 DNMSDESREHNSAWLNALWHSYTQQVEKARNLEPGSLNDFINNMDTYLKQTRGDSAKLAL 289

Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
           + GL+D +  ++++ Q L      ++ + +      K Y       +S    L   I  +
Sbjct: 290 EKGLVDKLLSRQDMEQLLADTVGKKNSKGLYKNVSVKRYLADVRSQVSPEPNLVGLITAV 349

Query: 280 KQTK 283
              +
Sbjct: 350 GGIQ 353


>gi|116749395|ref|YP_846082.1| signal peptide peptidase SppA, 36K type [Syntrophobacter
           fumaroxidans MPOB]
 gi|116698459|gb|ABK17647.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49
           [Syntrophobacter fumaroxidans MPOB]
          Length = 329

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 65/283 (22%), Positives = 121/283 (42%), Gaps = 23/283 (8%)

Query: 33  DNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSPGGS 79
           +    V  I ++G I D+             QE++ ++++  +D +  A+++ + S GGS
Sbjct: 43  EGKDKVLLIPVKGFISDTSRGFVLRQKPAMVQEIVSQLKKAEKDKTVKAVLLKVDSSGGS 102

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN--IIVAAETSLVGSIGVLFQ 137
             A + ++  I + K R         M  +A      A     IVA  +++ GS+GV+F 
Sbjct: 103 VSASDILYHEIMEFKRRSGAKLVAVLMGTAASGGYYIALPADSIVAHPSTITGSVGVIFI 162

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
            P V   +DK+G+ ++  KS   K   SPF +   +  Q++Q ++D     F+ L    R
Sbjct: 163 RPKVTGLMDKIGLEVEVDKSGRNKDMGSPFRKTTAEEQQILQHLIDELARKFIDLTVAHR 222

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
            +       +S  R++   EA ++GL+D VG  ++  +    L       ++  +     
Sbjct: 223 RLEPAALADVSTARVYLAEEALRLGLVDKVGYVDDALREAQTLAGLPPNARVVVYR-RAE 281

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQ-------GLWAVWNP 293
           Y   +L N+S S      I L+             G + +W P
Sbjct: 282 YPDDNLYNVSTSKSDGGRISLIDLGPADSFSSLHSGFYYLWLP 324


>gi|303244900|ref|ZP_07331226.1| signal peptide peptidase SppA, 36K type [Methanothermococcus
           okinawensis IH1]
 gi|302484717|gb|EFL47655.1| signal peptide peptidase SppA, 36K type [Methanothermococcus
           okinawensis IH1]
          Length = 310

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 65/275 (23%), Positives = 139/275 (50%), Gaps = 18/275 (6%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHV--EDNSPHVARIAIRGQIE---------------DS 50
           I    +++ ++ + ++    S ++    +  ++A I I  ++                D 
Sbjct: 10  ILFILMIMVVIAIGLLLVPSSDNILNFKSEGNIAVINIDNELVLKNSGSSGLFGNNNPDV 69

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
            + I  +     + +  A+++ ++ PGG   A E + R +++V  +KPV+  +  + AS 
Sbjct: 70  NDYIGALNDAENNPNIKAILLKVNCPGGEVIASEKLARKVKEVSKKKPVVAYIETLGASG 129

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
            Y+    +N IVA + S+VGSIGV     +    + KLG++   +K+   K   SP+  +
Sbjct: 130 AYMTIAPANYIVAEKHSIVGSIGVRMDVIHYYGLMKKLGINATVIKAGKYKDIGSPYRPM 189

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
            P+    ++ +++ +Y  FV+ V+E+R++  ++TL  ++GRI++G++AKKVGL+D VG +
Sbjct: 190 TPEEKACLEKMINETYMDFVKWVAENRHMTINETLKAANGRIYSGSDAKKVGLVDAVGTE 249

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
           E+       +    +  K +++ P K      + +
Sbjct: 250 EDAINITAKIANISN-PKTEEYTPSKPAGIFSMMS 283


>gi|308183529|ref|YP_003927656.1| Signal peptide protease IV (Protease IV) (Endopeptidase IV)
           [Helicobacter pylori PeCan4]
 gi|308065714|gb|ADO07606.1| Signal peptide protease IV (Protease IV) (Endopeptidase IV)
           [Helicobacter pylori PeCan4]
          Length = 292

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 133/277 (48%), Gaps = 7/277 (2%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+  ++L    + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKSFVLLL----IVLVFFSAKESAPSEPPNLAKLYLNGAIFSTEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P   + +Q+
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V+  Y  FV  V+++R +        ++G++++   A K+ LID +   ++    L  L
Sbjct: 193 LVNEQYQMFVDDVAKARKLNAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQDRLMEL 252

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
              +    ++     +   F +    S S+++     
Sbjct: 253 SKVKKAYWLEKSPMER---FIEKATQSASNIITQAFG 286


>gi|150399145|ref|YP_001322912.1| signal peptide peptidase SppA, 36K type [Methanococcus vannielii
           SB]
 gi|150011848|gb|ABR54300.1| signal peptide peptidase SppA, 36K type [Methanococcus vannielii
           SB]
          Length = 311

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 144/287 (50%), Gaps = 17/287 (5%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI------------- 47
           M+ V       +V++ L+ + ++           S ++A I + G I             
Sbjct: 1   MKKVYTYSAAAFVIMGLLLIGILAVVSFDTSF--SNNIAMINLDGAIFLKGSDSGLLSTG 58

Query: 48  -EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
               ++ I+ ++ +  +D+  A+I+ ++SPGG   A E + R I++V  +KPV+  +  +
Sbjct: 59  TTGVEDYIKWLDEVENNDNIKAVIIKINSPGGEVVASEKLSRKIKEVSEKKPVVAYIETI 118

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            AS  Y+ + +SN IVA + SLVGSIGV  +  +    ++KLGV+  S+     K   +P
Sbjct: 119 GASGAYMAASSSNYIVAEKQSLVGSIGVRMELLHYYGLMEKLGVNTTSITGGKYKNIGTP 178

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
              +  +  +M++ +VD  Y  F+ +V+E+RN+  ++TL+ +DG+I+ G +AK  GLID 
Sbjct: 179 NRPMTEEEYKMLESIVDEMYFDFISMVAENRNMTINETLIAADGKIYNGLQAKNAGLIDQ 238

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273
           VG +++               +I ++    +  F  +   +I++   
Sbjct: 239 VGTEKDAIDMACKFAKISE-PRIYEYKKSSSIGFFGMTLNNIATSFG 284


>gi|255011818|ref|ZP_05283944.1| putative protease IV [Bacteroides fragilis 3_1_12]
 gi|313149656|ref|ZP_07811849.1| protease IV [Bacteroides fragilis 3_1_12]
 gi|313138423|gb|EFR55783.1| protease IV [Bacteroides fragilis 3_1_12]
          Length = 592

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 80/280 (28%), Positives = 140/280 (50%), Gaps = 19/280 (6%)

Query: 2   EFVLKKIKTRYVM-----LSLVTLTVVYFSWSSHVEDNSPHV-ARIAIRGQIED------ 49
             V   +KT   +     L ++ L  +     +  +D S ++ A     G+I D      
Sbjct: 267 NDVRDYLKTLVKIDEDDRLPILGLEEMVNIKKNVPKDKSGNILAVYYASGEITDYAGSAA 326

Query: 50  ------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103
                   ++I  + ++  DD   A+++ ++SPGGSA+A E I+ A++++K +KPVI  +
Sbjct: 327 SDEGIIGSKMIRDLRKLKEDDDVKAVVLRVNSPGGSAFASEQIWHAVKELKAKKPVIVSM 386

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
            + AAS GY ISCA++ I+A  T+L GSIG+    P VK   +K+G++   VK++     
Sbjct: 387 GDYAASGGYYISCAADSIIAEPTTLTGSIGIFGMIPNVKGLTEKIGLTYDVVKTNQFSDF 446

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
            +    VN     ++Q ++   Y  FV   +E R++  DK   +++GR+WTG  AKK+GL
Sbjct: 447 GNLMRPVNSDERALLQMMIGQGYDLFVSRCAEGRHMSKDKIEKIAEGRVWTGEMAKKIGL 506

Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
           +D +GG  +  +        +    I  +   K+     L
Sbjct: 507 VDELGGIGKALEIAAQKADLKG-YTIISYPAKKDILSTLL 545



 Score = 95.4 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 98/264 (37%), Gaps = 26/264 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49
             ++ +VTL  +  S           V  + ++G +                        
Sbjct: 22  LFIIGVVTLVGIISSSDIETVVKKNSVMMLDLKGTLVERTQESLEGLLGKFTGETADTYG 81

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
             +++  I++   +D+   + +  S    S  + +AI +A+   K     +    +    
Sbjct: 82  LDDILASIKKAKENDNIKGIYIQASWLDASYASLQAIRKALDDFKESGKFVVAYSDNYTQ 141

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y +S  ++ ++     ++   G+     + K  L KLG+ ++  K    K+   PF  
Sbjct: 142 GLYYLSSVADKVMLNPKGMIEWRGLASAPIFYKDLLQKLGIEMQVFKVGTYKSAVEPFTA 201

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225
           +E++P   + +   + S ++  +  VS SR I  D   + +D     +   E+ K GL D
Sbjct: 202 TEMSPANREQVTAFIGSIWNQILDGVSASRKIGKDSLNMYADRMLMFYPSDESVKCGLAD 261

Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249
            +  Q +V   L  L       ++
Sbjct: 262 TLIYQNDVRDYLKTLVKIDEDDRL 285


>gi|332667870|ref|YP_004450658.1| signal peptide peptidase SppA, 67K type [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332336684|gb|AEE53785.1| signal peptide peptidase SppA, 67K type [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 594

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 67/273 (24%), Positives = 127/273 (46%), Gaps = 11/273 (4%)

Query: 27  WSSHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPG 77
                      +A +   G + D          +  +  IE I  DD   A+++ ++S G
Sbjct: 297 PGKKNLSADNKIAVLYAEGTVLDGKGANGTIGDKRYVSAIEDILEDDKIKAIVLRVNSGG 356

Query: 78  GSAYAGEAIFRAI-QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GSA A E I+ A+ +  +  KP+I  + + AAS GY I+C ++ I A   ++ GSIGV  
Sbjct: 357 GSALASENIWYALSKAKEAGKPLIVSMGDYAASGGYYIACMADSIYAEPNTITGSIGVFR 416

Query: 137 QYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
             P ++  + +KLG+++ SVK+ P     +   +++ +  +  Q   +  Y  F++ V++
Sbjct: 417 MVPSIEKMMANKLGITMDSVKTGPFALGLNVMQDMSEEEARRAQISTEEMYRLFIKRVAD 476

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
            R +  +    ++ GR+W+G +AK++GL+D +G      +S   LG  +  R +   +  
Sbjct: 477 GRKMKPEAVNEIAQGRVWSGVDAKRIGLVDKLGDLNAAIKSAAKLGKIKDYRTVTYPSIK 536

Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                   + L   S  E  +  + Q +   L 
Sbjct: 537 DPMQQLLEEFLGEGSDDEAKMGKIMQKEFPELV 569



 Score = 93.9 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 97/263 (36%), Gaps = 24/263 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQ------------IEDSQ-------- 51
            +++ +  +  +  S           V R+                 I D +        
Sbjct: 23  LILVGIGIIGAIASSAEKTEPVGPNSVLRLTFDQVMPEQTNNVEASSISDFKRSKVLGVH 82

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAI-FRAIQKVKNRKPVITEVHEMAASA 110
           ++ + I R + DD+   +++       + +A   I  +AI   K +   +    ++    
Sbjct: 83  DVADAIRRAADDDNIKGILLEPEMASLNGFASARILRQAIADFKKKGKFVVAHGKIFMRG 142

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS-- 168
            Y ++  ++ +    +  V   G   Q  + K  LD+LG+ ++   +   K    P+   
Sbjct: 143 SYYLASVADEVYINPSGYVEINGFAVQQMFYKRMLDQLGIKMQIYYAGKFKGATEPYRLE 202

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
           + +P+     ++ +   Y  F+  +++SR +   +   + +  +  T  +A + GL D V
Sbjct: 203 KFSPENKLQYKEFLADFYDVFLEDLAKSRKMSSAQLRSVINQGVANTPEKAVEYGLFDKV 262

Query: 228 GGQEEVWQSLYALGVDQSIRKIK 250
             ++E+   L       +   +K
Sbjct: 263 LYRQELIVQLRKKLGLDADEDVK 285


>gi|284102428|ref|ZP_06386046.1| signal peptide peptidase SppA (protease IV) [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283830320|gb|EFC34553.1| signal peptide peptidase SppA (protease IV) [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 322

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 62/288 (21%), Positives = 127/288 (44%), Gaps = 25/288 (8%)

Query: 31  VEDNSPHVARIAIRGQIEDSQ----------------ELIERIERISRDDSATALIVSLS 74
             +    V  + I G +  ++                   E + + + D++  A+++ +S
Sbjct: 35  SGEGRDKVLLVEISGVLTSAKPGGVLDRFFHRPSLPARFKEELTKAADDEAVKAIVLRIS 94

Query: 75  SPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           +PGG+  A + ++  IQ++K   + PVI  + ++  S GY ++ A++ +VA  +S+ GS+
Sbjct: 95  TPGGTVTASDILYHEIQEMKKTRKVPVIASIMDLGTSGGYYVAMAADRVVAHPSSVTGSL 154

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GV+         ++K+GV   +V S P K   SPF  +  +   + Q V+DS Y  F+R+
Sbjct: 155 GVIMLTLNASGLMEKIGVRADAVMSGPHKDMGSPFRTMTDQDRAIFQGVIDSLYARFLRV 214

Query: 193 VSESR-NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
           + + R ++  +    L+DGRI++  +AK  GLID +G  ++  +        +  + +  
Sbjct: 215 IEQGRPDLKPETIRQLADGRIYSATQAKDHGLIDGIGYLDDALELAKKEAGIEEAQVVMY 274

Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV------QGLWAVWNP 293
             P         +        +   P +    +           +W P
Sbjct: 275 RRPGGYQPNIYAQGPGAPGRTDWIFPKLDPVSLLLAGGTPAFMYLWLP 322


>gi|315453141|ref|YP_004073411.1| protease IV [Helicobacter felis ATCC 49179]
 gi|315132193|emb|CBY82821.1| protease IV (PspA) [Helicobacter felis ATCC 49179]
          Length = 285

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 68/281 (24%), Positives = 133/281 (47%), Gaps = 7/281 (2%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  KT       ++L    FS +       P++A+I + G I +S+   ++++R+
Sbjct: 12  LDFITKYFKT----FVFLSLLFFAFSLNKDEGHAQPNLAKIYLHGPIFESESFRDQVDRV 67

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGGS  A   +   +  ++   PV+  V  + AS  Y     +N+
Sbjct: 68  LKIPSIKGVLLLIDSPGGSISASVELSDIVATLRKTMPVVAYVQGVMASGSYYTGMQANL 127

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           I A   +LVGSIGV+F    +   +DKLG+  + +     K   +       K  Q + D
Sbjct: 128 IYANRGALVGSIGVIFSGANIAALMDKLGIKSQGMAKGEYKEVGTFTRAWTDKEKQFLGD 187

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           ++   Y+ FV  V+++R +   K+ + ++G+I++  +A  + LID VG  ++   +L  L
Sbjct: 188 LLSEQYNMFVSDVAKARGLDPKKSNIFAEGKIFSATQAANLHLIDHVGTYDQAVYALQKL 247

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
              ++   +K     +   F D    S S +L   +    +
Sbjct: 248 TQVKNPIWLK---KDRLEMFMDKFLQSSSQVLSQVLGYQLR 285


>gi|309788853|ref|ZP_07683448.1| signal peptide peptidase SppA, 67K type [Shigella dysenteriae 1617]
 gi|308923124|gb|EFP68636.1| signal peptide peptidase SppA, 67K type [Shigella dysenteriae 1617]
          Length = 594

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 295 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 354

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 355 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 414

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 415 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 473

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 474 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVTKAAELAKV-KQWHLEYYVDEPTF 532

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 533 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 561



 Score = 98.9 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 99/280 (35%), Gaps = 39/280 (13%)

Query: 8   IKTRYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ--------------- 51
           +   ++ L LV + +    S     E  S     + I G I D+                
Sbjct: 3   LNLFFIFLVLVGVGLWMQVSGGDSKETASRGALLLDISGVIVDNPDSSQRFSKLSRQLLG 62

Query: 52  ------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKP 98
                       +++  I +   D + T +++ L +  G      + I +A+++ ++   
Sbjct: 63  ASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGK 122

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL VS    +  
Sbjct: 123 PVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVG 182

Query: 159 PMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLS 208
             K+   PF   +++P A +     +   +  ++  V+ +R IP  +           L+
Sbjct: 183 TYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNAVAANRQIPAQQVFPGAQGLLEGLT 242

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                T   A +  L+D +    E+ ++L          K
Sbjct: 243 KTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 282


>gi|295096153|emb|CBK85243.1| signal peptide peptidase SppA, 67K type [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 618

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 75/273 (27%), Positives = 126/273 (46%), Gaps = 14/273 (5%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPG 77
            +   +D+   +A +   G I D +E            +I     D    A+++ ++SPG
Sbjct: 317 AAKKPDDSGDSIAVVFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPG 376

Query: 78  GSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GS  A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+  
Sbjct: 377 GSVSASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFG 436

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
               V+  LD LGV    V +SP+       S + P+  +MMQ  ++S Y  F+ LV++S
Sbjct: 437 MINTVENSLDYLGVHTDGVSTSPLADVSVTKS-LPPEVSEMMQLSIESGYKRFITLVADS 495

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R    D+   ++ G +WTG +AK  GL+D +G  ++  +    L        +  +    
Sbjct: 496 RKKTPDQIDQIAQGHVWTGQDAKSNGLVDSLGDFDDAVKKAAELAKL-KQWHVDYYQDEP 554

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
            ++   + ++S S  +   +P   Q  +    A
Sbjct: 555 TFFDMVMDSMSGS--VRAMLPDALQAYLPAPVA 585



 Score = 96.6 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 103/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVY--FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV   +   + +  ++    ++   S ++  + ++     + I G I D         
Sbjct: 19  LNFVRNLVMNIFFIFLVLVCAGIWMHISNANQSQHSTRGALLLDITGVIVDKPSTSNRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               ++++ I +   D + T +++ L    G+     + I +A+
Sbjct: 79  VIGRQLFGATSDRLQENSLFDIVDTIRQAKDDRNITGIVLDLKDFAGADQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  + +      Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVIAIGDSYTQGQYYLASFANKIWLSPQGTVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           +    +    K+   PF   +++P A +     +   +  ++  ++ +R I  ++     
Sbjct: 199 TTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLGTIAANRQITAEQVFPGA 258

Query: 205 LVLSDGRIW----TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
             + DG       T   A    L+D +G   E+ ++L          K
Sbjct: 259 RGVLDGLRMVDGDTAKYALDNKLVDQLGSSAEIEKALTKQFGWSKEDK 306


>gi|222151629|ref|YP_002560785.1| hypothetical protein MCCL_1382 [Macrococcus caseolyticus JCSC5402]
 gi|222120754|dbj|BAH18089.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 333

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 67/280 (23%), Positives = 133/280 (47%), Gaps = 17/280 (6%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALI 70
             S +    D +  +ARI I G I D+             Q +++ ++ +  +    AL+
Sbjct: 44  LASSTVDGSDATNQIARIEIDGTIMDTGTPSPFSGESYNHQLILDSLDEVKDNGDIKALM 103

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLV 129
           + ++SPGG  Y    I   I+ VK     +    +  A++G     A  + I A++ +L 
Sbjct: 104 LVVNSPGGGVYESAEIHDKIEAVKEAGKKVYVTMKNTAASGGYYISAPADKIYASKETLT 163

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GS+GV+ Q    K   DK GV   ++KS P K   SP  E++     ++Q  VD SY  F
Sbjct: 164 GSLGVIMQSMNYKELADKYGVKFNTIKSGPHKDIMSPTKEMDETERAILQKFVDESYEGF 223

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V ++S  R++   +   ++DGRI++G +A+K+ L+D +G + +  ++L      ++  ++
Sbjct: 224 VNVISNGRHMDKAQVKKIADGRIYSGQQAQKLDLVDEIGTEADAMKALKKEIKAKNA-EV 282

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
            +++ P +++       +  S +   +       ++ L +
Sbjct: 283 IEFSEPDDFFNSKF--FAADSFVSHLMGKNDVAAIKELLS 320


>gi|294501535|ref|YP_003565235.1| signal peptide peptidase SppA, 36K type [Bacillus megaterium QM
           B1551]
 gi|294351472|gb|ADE71801.1| signal peptide peptidase SppA, 36K type [Bacillus megaterium QM
           B1551]
          Length = 336

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 78/331 (23%), Positives = 141/331 (42%), Gaps = 45/331 (13%)

Query: 6   KKIKTRYV---MLSLVTLTVVYFSWSSHVEDN----------------------SPHVAR 40
           K+     +   +     +  + FS     +D                       +  +A 
Sbjct: 4   KRWIALLIAACLFIFSAIVNIGFSVKEEKDDGLAGIFGGDDSELSETVIEKGNAAKKIAV 63

Query: 41  IAIRGQIEDS---------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           + + G I+D+               Q  ++++E    D +   +I+ ++SPGG       
Sbjct: 64  LEVNGTIQDTGSGSSPLMSQNGYNHQAFLKQLEAAKNDKAVKGVIIKVNSPGGGVVESAE 123

Query: 86  IFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           I + I+++K   +KPV   +  MAAS GY IS A+N I A   +L GS+GV+ Q      
Sbjct: 124 IHKKIEELKKETKKPVYISMGSMAASGGYYISTAANKIYAIPDTLTGSLGVIMQSVNYGK 183

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
             DKLGV    +KS   K   SP  E+  +  ++MQ +VD+SY  FV ++SE R++  +K
Sbjct: 184 LADKLGVESVVIKSGAHKDIMSPTREMTGEEKEIMQTLVDNSYDGFVNVISEGRHLSKEK 243

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD---WNPPKNYWF 260
              ++DGR++ G +AK++ L+D +G  E+    +      +  + I+    +  P     
Sbjct: 244 VRSIADGRVYDGRQAKELKLVDQLGYFEDAVTGMEKDYKLKGAQVIQYNQGFGLPSWLSM 303

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
              K +     +   +    Q     L  ++
Sbjct: 304 SMQKVIGGDEQVTAMLKTFAQPSSPRLMYLY 334


>gi|160875523|ref|YP_001554839.1| signal peptide peptidase SppA [Shewanella baltica OS195]
 gi|160861045|gb|ABX49579.1| signal peptide peptidase SppA, 67K type [Shewanella baltica OS195]
 gi|315267710|gb|ADT94563.1| signal peptide peptidase SppA, 67K type [Shewanella baltica OS678]
          Length = 615

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 14/268 (5%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                V  I   G I            +   E + +   D    AL++ + SPGGSA+A 
Sbjct: 322 VEQDSVGIIVASGTILNGTQPAGQIGGESTAELLRKARFDKHVKALVLRVDSPGGSAFAS 381

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + +  +K   KPV+  +  +AAS GY IS +++ I A  T+L GSIG+       +
Sbjct: 382 EQIRQELLALKAAGKPVVVSMGSLAASGGYWISASADYIFATPTTLTGSIGIFGMITTFE 441

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L  +GV    V +S         + ++P+   ++Q  ++  Y  F+ LV++ R +  +
Sbjct: 442 DSLASIGVHTDGVSTSEWAGLSVTRT-LSPQVEAIIQRHIERGYLDFISLVAKERKMTIE 500

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFC 261
           +   ++ GR+W+G +A ++GL+D +G  +E       L        ++ +        F 
Sbjct: 501 QVDKIAQGRVWSGKKALELGLVDELGDLDEAIAKAAKLADMTLFDTRVIEQELTPEQRFM 560

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                S+SS L  ++   + + ++ + A
Sbjct: 561 QQMFASVSSYLPASLS--QSSMLEQMLA 586



 Score = 83.9 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 89/273 (32%), Gaps = 36/273 (13%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51
           +K+    +   ++   ++    S  ++        + + G I D +              
Sbjct: 23  RKLILNLIFFGILATIIISIGSSEDIQVEDNSALVLNLAGSIVDQKQQVDPLEAAFKQGQ 82

Query: 52  -----------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRKPV 99
                      +++  I+  ++D   + L++             ++I  A+ + K     
Sbjct: 83  NANADGEILLADVLYVIDNAAQDQRISTLVLDLADLKRAGISKLQSIGDALNRFKESGKK 142

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
           +  +        Y ++  ++ I       V   G+     Y K  LDKL V     +   
Sbjct: 143 VVAIGNYYEQNQYFLASFADTIYLNPQGGVSLDGLSMYNQYFKSALDKLKVKAHIFRVGT 202

Query: 160 MKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSD 209
            K+   P+   +++  A +    ++   +  + + V+ +RNI  +            L  
Sbjct: 203 FKSAVEPYMRDDMSDAAREASSALLADVWQSYTQTVAGNRNIEPNSLVPDATTYLAELDK 262

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
               + A A  +  +D +   E+  Q++     
Sbjct: 263 ANGDSAAMAINMKWVDSLATTEDFRQTMLETVG 295


>gi|172060050|ref|YP_001807702.1| peptidase S49 [Burkholderia ambifaria MC40-6]
 gi|171992567|gb|ACB63486.1| peptidase S49 [Burkholderia ambifaria MC40-6]
          Length = 330

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 124/286 (43%), Gaps = 17/286 (5%)

Query: 7   KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           KI  R+    +  L+   ++ FS  +       H A + I G+I      +++++   ++
Sbjct: 44  KIFFRFAFLGVFLLLAFALIDFSDDAKFASTGRHTALVTIDGEIAAGTNANAEDINTALD 103

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115
               DD A  +++ ++SPGGS      ++  I++++ +   KP+   V +M AS GY I+
Sbjct: 104 AAFDDDGAAGVVLRINSPGGSPVQAGMVYDEIRRLRTKYPNKPLYVVVTDMCASGGYYIA 163

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         + KLGV  +   S   K    PFS   PK  
Sbjct: 164 SAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVDRRLHTSGENKGFYDPFSPETPKMD 223

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              Q ++D  +  F++ V + R     +T  +  G  WTG ++ ++GL D  G  + V +
Sbjct: 224 AHAQALLDQVHAQFIKAVKDGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDTVAR 283

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
            +           + D+   ++      +    +        L   
Sbjct: 284 DVLK------APDLVDYTVKESLTNRVARKFGAAVGGAAMKALAAG 323


>gi|300924815|ref|ZP_07140755.1| signal peptide peptidase SppA [Escherichia coli MS 182-1]
 gi|301327503|ref|ZP_07220736.1| signal peptide peptidase SppA [Escherichia coli MS 78-1]
 gi|309793539|ref|ZP_07687966.1| signal peptide peptidase SppA [Escherichia coli MS 145-7]
 gi|331653170|ref|ZP_08354175.1| signal peptide peptidase SppA, 67K type [Escherichia coli M718]
 gi|300419022|gb|EFK02333.1| signal peptide peptidase SppA [Escherichia coli MS 182-1]
 gi|300845934|gb|EFK73694.1| signal peptide peptidase SppA [Escherichia coli MS 78-1]
 gi|308123126|gb|EFO60388.1| signal peptide peptidase SppA [Escherichia coli MS 145-7]
 gi|323378358|gb|ADX50626.1| signal peptide peptidase SppA, 67K type [Escherichia coli KO11]
 gi|331049268|gb|EGI21340.1| signal peptide peptidase SppA, 67K type [Escherichia coli M718]
          Length = 666

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 367 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 426

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 427 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 486

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 487 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 545

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 546 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 604

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 605 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 633



 Score =  100 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 67  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 126

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 127 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 186

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 187 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 246

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 247 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 306

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 307 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 354


>gi|306814983|ref|ZP_07449139.1| protease 4 [Escherichia coli NC101]
 gi|305851631|gb|EFM52084.1| protease 4 [Escherichia coli NC101]
          Length = 618

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+ +R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVANARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 99.3 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 306


>gi|224024636|ref|ZP_03643002.1| hypothetical protein BACCOPRO_01364 [Bacteroides coprophilus DSM
           18228]
 gi|224017858|gb|EEF75870.1| hypothetical protein BACCOPRO_01364 [Bacteroides coprophilus DSM
           18228]
          Length = 589

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 72/279 (25%), Positives = 138/279 (49%), Gaps = 15/279 (5%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQI------------EDSQELIERIERISRDDSATAL 69
           ++    ++  + +S  +A     G+I             +S+++I  + ++  D +  A+
Sbjct: 290 MINVKRNTPRDKSSNIIAVYYAYGEIDNSSSYNYNEEGINSEKVITDLRKLREDKNIKAV 349

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           ++ ++SPGGSAY  E I+R ++ +K  KPVI  + + AAS GY ISCA++ IVA  T+L 
Sbjct: 350 VLRVNSPGGSAYGSEQIWREVKLLKEEKPVIVSMGDYAASGGYYISCAADWIVAEPTTLT 409

Query: 130 GSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
           GSIG+    P     +  KL + I  VK++ +    +    +N +   ++Q  V++ Y  
Sbjct: 410 GSIGIFGMVPDFSELVTQKLDLHIDGVKTNKLADLGNIARPLNAEEKALIQQSVNNGYEL 469

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           F R  +E RN+P +    +++GR+WTGA AK++ L+D +G  +   ++            
Sbjct: 470 FTRRCAEGRNMPIEDLKKIAEGRVWTGAMAKELKLVDELGNLQTALKAASQHAKI-ENYN 528

Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +  +  P++ +   L      S ++  +        +G 
Sbjct: 529 VVAYPKPED-FLTTLMKTRKDSYIQSQVEATFGDFSKGF 566



 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 104/267 (38%), Gaps = 23/267 (8%)

Query: 10  TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DS 50
             ++++ + ++  +  S  +    ++  V  + ++G I                      
Sbjct: 20  FIFMIIGIASVAGLLASSETETTVHNNSVFVLDLQGSIAERYQPTPIDQLLDEEQSVYGL 79

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
            ++   I +   +D    + +++ +    + + + I +A+   K     I       + +
Sbjct: 80  NDISASIAKAKENDQIKGIYLNVGNFSCGSASLQEIRQALADFKESGKFIIAYGGGYSQS 139

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FS 168
           GY ++  ++ I+   +  +   G+  Q  +VK  L K+G++++  +    K+   P   +
Sbjct: 140 GYYLASIADKIILNPSGSISWHGLSAQTLFVKDLLKKVGINVQIFRVGTYKSAVEPLIGT 199

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLIDV 226
           E++P   +  Q  V S ++     +++SR +  ++  +L+D              GL D 
Sbjct: 200 EMSPANKEQTQAFVQSIWNQMTDDIAQSRQLTQEQLNILADQYMDFQLADSCIANGLADT 259

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWN 253
           +  ++EV   L +    +   K+    
Sbjct: 260 LMYKDEVLAYLKSQIGLKEKDKLHTLT 286


>gi|293446138|ref|ZP_06662560.1| signal peptide peptidase SppA [Escherichia coli B088]
 gi|300823176|ref|ZP_07103309.1| signal peptide peptidase SppA [Escherichia coli MS 119-7]
 gi|331677647|ref|ZP_08378322.1| signal peptide peptidase SppA, 67K type [Escherichia coli H591]
 gi|291322968|gb|EFE62396.1| signal peptide peptidase SppA [Escherichia coli B088]
 gi|300524330|gb|EFK45399.1| signal peptide peptidase SppA [Escherichia coli MS 119-7]
 gi|324016441|gb|EGB85660.1| signal peptide peptidase SppA [Escherichia coli MS 117-3]
 gi|331074107|gb|EGI45427.1| signal peptide peptidase SppA, 67K type [Escherichia coli H591]
          Length = 666

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 367 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 426

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 427 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 486

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 487 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 545

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 546 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 604

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 605 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 633



 Score = 98.5 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 67  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 126

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 127 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 186

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 187 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 246

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +    +
Sbjct: 247 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRLIPAQQVFPGA 306

Query: 209 DGRIW--------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            G +         T   A +  L+D +    E+ ++L          K
Sbjct: 307 QGLLVGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 354


>gi|300917670|ref|ZP_07134319.1| signal peptide peptidase SppA [Escherichia coli MS 115-1]
 gi|300415071|gb|EFJ98381.1| signal peptide peptidase SppA [Escherichia coli MS 115-1]
          Length = 666

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 367 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 426

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 427 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 486

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 487 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 545

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 546 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 604

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 605 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 633



 Score = 99.7 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 67  LNFVREMVLNLFFIFLVLVGVGIWMQVSGDDSKETASRGALLLDISGVIVDKPDSSQRFS 126

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 127 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 186

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 187 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 246

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 247 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 306

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 307 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 354


>gi|293415083|ref|ZP_06657726.1| signal peptide peptidase SppA [Escherichia coli B185]
 gi|291432731|gb|EFF05710.1| signal peptide peptidase SppA [Escherichia coli B185]
          Length = 666

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 367 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 426

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 427 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 486

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 487 TTVENSLDSIGVHTDGVSTSPLADV-SITKALPPEAQQMMQLSIENGYKRFITLVADARH 545

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 546 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 604

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 605 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 633



 Score =  100 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 67  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 126

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 127 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 186

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 187 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 246

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 247 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 306

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 307 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 354


>gi|260597600|ref|YP_003210171.1| protease 4 [Cronobacter turicensis z3032]
 gi|260216777|emb|CBA30223.1| Protease 4 [Cronobacter turicensis z3032]
          Length = 616

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 69/277 (24%), Positives = 121/277 (43%), Gaps = 22/277 (7%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPG 77
             +   +    +A +   G I D +E            +I     D    A+++ ++SPG
Sbjct: 315 PVNKPSEQGESIAVVFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPG 374

Query: 78  GSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GS  A E I + +   K   KP++  +  MAAS GY IS  ++ IVA  ++L GSIG+  
Sbjct: 375 GSVTASETIRQELAAAKEAGKPIVVSMGGMAASGGYWISTPASYIVANPSTLTGSIGIFG 434

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
               V+  LD +GV    V +SP+         + P+  ++MQ  +++ Y  F+ LV++S
Sbjct: 435 VINTVENSLDSIGVHTDGVATSPLADVSVT-KALPPEVQKLMQLTIENGYQRFIGLVAQS 493

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R+    +   ++ G +WTG +AK+ GL+D +G  ++  +    L        +  +    
Sbjct: 494 RHKTPQQIDQIAQGHVWTGEDAKQNGLVDSLGDFDDAVKKAAELAKL-KTWHLDFYQDEP 552

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
            +    L NL+ S              +      W P
Sbjct: 553 GFVDMVLANLTGSV----------HAMLPQALQAWLP 579



 Score = 82.7 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 79/208 (37%), Gaps = 11/208 (5%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASA 110
           +++  I +   D + T +++ L    G+     + I +A+++ ++    +  + E  +  
Sbjct: 97  DIVNAIRQAKDDRNITGIVLDLKDFAGADQPSMQYIGKALREFRDAGKPVYAIGESYSQG 156

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168
            Y ++  +N I  +    V   G      Y K  LDKL V+    +    K+   PF   
Sbjct: 157 QYYLASFANKIWLSPQGTVDLHGFATNGLYYKSLLDKLKVTTHVFRVGTYKSAVEPFIRD 216

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKK 220
           +++P+A +     +   +  ++  ++ +R +P  +           L      T   A  
Sbjct: 217 DMSPEAREADSRWIGELWQNYLGTLAANRQVPASQIFPGAQAMIAGLEAAGGDTAKYALD 276

Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRK 248
             L+D +     + ++L          K
Sbjct: 277 NKLVDELASSATIDKALVKQFGWSDKDK 304


>gi|255594924|ref|XP_002536196.1| Protease, putative [Ricinus communis]
 gi|223520527|gb|EEF26187.1| Protease, putative [Ricinus communis]
          Length = 572

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 131/287 (45%), Gaps = 18/287 (6%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLS 74
           Y + +  +      +  I   G I D ++         L + + +   DD   A+++ + 
Sbjct: 262 YLTATRSLPGGHDKIGVIVASGMILDGEQRAGLVGGDTLSDLLRQARDDDDVKAVVLRVD 321

Query: 75  SPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           S GGSA+A E I + + +++   KPV+  +  +AAS GY IS +++ + A   ++ GSIG
Sbjct: 322 SEGGSAFASEIIRQQLLELQAADKPVVVSMGSVAASGGYWISASADEVWATPATITGSIG 381

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           +   +P V   L KLGV    V ++ +         V+P     +Q  +++ Y  F+ +V
Sbjct: 382 IFGAFPTVDKSLAKLGVHTDGVGTTAIADAFRVDRPVSPAVAGAIQSGIEAGYQRFLTVV 441

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK--IKD 251
           +E R +       +  G++W G++A+++GL+D +GG E+   +   L   +  ++  I+ 
Sbjct: 442 AEGREMDKAAVDKIGQGQVWAGSDAQRIGLVDHLGGLEDAVGAAAKLAELKDYQQELIEP 501

Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQ------TKVQGLWAVWN 292
              P+      L  ++    L   I + +         +  L  +W 
Sbjct: 502 PRSPQELLIERLSGVAEKLSLASHIDVHRPGAFGLTRSLGPLAPLWR 548



 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 84/251 (33%), Gaps = 16/251 (6%)

Query: 52  ELIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           ++I+ I+  ++D     L++   +         + + +AI + +     +    +     
Sbjct: 46  DMIKAIDTAAKDARIKVLVIQTDAMEYAGLSKLQELAQAIARFRETGKPVIATGDNFNQD 105

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168
            Y ++  ++ +V      V   G     P+ K  LDKL V     +    K+   PF   
Sbjct: 106 QYWLAAQADRVVMNPMGEVLLQGYGVYTPFFKQALDKLDVDFHVFRVGTYKSAVEPFLRD 165

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--------RIWTGAEAKK 220
           +++ +  Q     +++ +  +   V+  R I  ++     +             G  A  
Sbjct: 166 DMSAEVKQNHLVWLNTLWQQYKDGVAARRKIGVERIDDYVNHIDRALAASNGDAGKAAVD 225

Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSI-----RKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
             L+D +  +EE  +++     +           +D+             + +       
Sbjct: 226 AKLVDTLQTREEFNRAMVDQVGEDDDGLYNAVDFRDYLTATRSLPGGHDKIGVIVASGMI 285

Query: 276 IPLMKQTKVQG 286
           +   ++  + G
Sbjct: 286 LDGEQRAGLVG 296


>gi|157146039|ref|YP_001453358.1| protease 4 [Citrobacter koseri ATCC BAA-895]
 gi|157083244|gb|ABV12922.1| hypothetical protein CKO_01793 [Citrobacter koseri ATCC BAA-895]
          Length = 618

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 71/271 (26%), Positives = 121/271 (44%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDGIGVVFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   K   KPV+  +  MAAS GY IS  ++ IVA  ++L GSIG+    
Sbjct: 379 VSASEVIRAELAAAKAAGKPVVVSMGGMAASGGYWISTPASYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+       S + P+  QMMQ  +++ Y  F+ LV+++R 
Sbjct: 439 NTVENSLDSIGVHTDGVATSPLADVSVTKS-LPPEVQQMMQLSIENGYKRFITLVADARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
               +   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPAQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAIAKAAELAKL-KQWHLEYYQDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + ++S S  +   +P   Q  +    A
Sbjct: 557 FDRIMDSMSGS--VRAMLPEAIQAMLPAPLA 585



 Score = 96.2 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 102/282 (36%), Gaps = 40/282 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S  +  +  +     + I G I D         
Sbjct: 19  LNFVRELVLNLFFIFLVLVGVGIWMQLSDGNTSQQTARGALLLDISGVIVDKPSSTNRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G+     + I +A+
Sbjct: 79  VIGRQLFGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGADQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V +  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVFAVGDSYSQGQYYLASFANKIWLSPQGTVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             + DG       T   A    L+D +    EV ++L     
Sbjct: 259 QAMLDGLSKVDGDTAKYALDNKLVDALASNAEVEKALTKQFG 300


>gi|126657415|ref|ZP_01728574.1| Peptidase S49, protease IV [Cyanothece sp. CCY0110]
 gi|126621402|gb|EAZ92114.1| Peptidase S49, protease IV [Cyanothece sp. CCY0110]
          Length = 597

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 114/245 (46%), Gaps = 9/245 (3%)

Query: 30  HVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSA 80
               +S  +A + + G I D              + + +I  D+   A+++ ++SPGGSA
Sbjct: 303 TDNSSSNKIAVVYLEGAIVDGIGNREQVGGTRFAKLLRKIGDDEQVKAVVIRINSPGGSA 362

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
              + I R IQ ++  KPVI  +  +AAS GY I+     I A   ++ GSIGV      
Sbjct: 363 TGSDIILREIQLIQETKPVIISMGNVAASGGYWIATGGEHIFAQPNTITGSIGVFGVLLN 422

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           ++   +  G++  +VK++      +       + + + Q  V+  Y  F+  V++SRN+ 
Sbjct: 423 IQEIANNNGITWDTVKTAKFADLGTATRPKTEQELAIYQKSVNRIYDLFLEKVAQSRNLS 482

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
            +K   ++ GR+W+G  AKK+GL+D  GG     +            +++++   + +  
Sbjct: 483 KEKVASIAQGRVWSGEMAKKIGLVDSFGGLNAAIEYAAKQTELGKDWQVQEYPTSQGFAE 542

Query: 261 CDLKN 265
             LK 
Sbjct: 543 LFLKR 547



 Score = 98.5 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 114/265 (43%), Gaps = 25/265 (9%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------- 51
            + T   + S+V L +   S  +        V  + +  QI+D +               
Sbjct: 20  FLFTTVGVSSIVILLITLASVETEPAIKDKSVLVLDLSTQIQDKEPFVNIRDILSDKDQS 79

Query: 52  -----ELIERIERISRDDSATALIVSLSSPG-GSAYAGE-AIFRAIQKVKNRKPVITEVH 104
                ++I+ IE+ S+DD   A+ +  S+   GS YA    I +A+ K K     I    
Sbjct: 80  VLTLSQVIKNIEKASKDDRIKAIFLDGSNANSGSGYASFAEIRQALIKFKESGKKIIAYD 139

Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164
              +   Y ++  ++ ++     +V   G+  +  +    LD+ G+ ++ V+    KA  
Sbjct: 140 ITVSEQEYYLTSLADTLIVNPMGVVELNGISTEPLFWTGALDRYGIGVQVVRVGEYKAAV 199

Query: 165 SPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKV 221
            PF  ++++ +  Q ++ ++ + ++ F++ V E R I  +    ++D   I T  EA+K+
Sbjct: 200 EPFIRTQLSEENRQQLEVLLGNIWNNFLQKVGEVRKIEANNLQQIADNQGILTPQEAQKL 259

Query: 222 GLIDVVGGQEEVWQSLYALGVDQSI 246
            LID V  +++    L  +  ++  
Sbjct: 260 KLIDQVDYRDQAISLLKEITKNKEE 284


>gi|72382638|ref|YP_291993.1| signal peptide peptidase A [Prochlorococcus marinus str. NATL2A]
 gi|72002488|gb|AAZ58290.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Prochlorococcus marinus str. NATL2A]
          Length = 269

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 69/264 (26%), Positives = 128/264 (48%), Gaps = 5/264 (1%)

Query: 33  DNSPHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            +   +ARI I G I       +++ +++I   +   AL++ + SPGG+    + I  A+
Sbjct: 8   KSKKRMARICIEGPINSETRKIVLKALKQIEERE-FPALLLRIDSPGGTVGDSQEIHSAL 66

Query: 91  QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
            +++ +   V+     ++AS G  I   +  IVA   ++ GSIGV+ +   +   L+K+G
Sbjct: 67  LRLREKGCHVVASFGNISASGGVYIGVGAEKIVANPGTITGSIGVILRGNNLSKLLEKVG 126

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +  ++VKS   K   SP   ++ +   ++Q ++DSSY  FV  VS+ RN+  +     +D
Sbjct: 127 IKFETVKSGIYKDILSPDRPLSTEERALLQSLIDSSYEQFVLAVSKGRNLTPEVVKSFAD 186

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           GR++TG +AK+ GL+D +G + +       +       K   +   K      L    I 
Sbjct: 187 GRVFTGEQAKEFGLVDEIGDENDAKLLAIKIANLDEKTKPITFGKTKKKLLGFLPGGKII 246

Query: 270 SLLEDTIPLMKQTKVQGLWAVWNP 293
             L + + L  +   Q LW ++ P
Sbjct: 247 HNLVNALNLELEGNGQILW-LFKP 269


>gi|117623937|ref|YP_852850.1| protease 4 [Escherichia coli APEC O1]
 gi|218558634|ref|YP_002391547.1| protease 4 [Escherichia coli S88]
 gi|237705717|ref|ZP_04536198.1| protease IV [Escherichia sp. 3_2_53FAA]
 gi|115513061|gb|ABJ01136.1| protease IV [Escherichia coli APEC O1]
 gi|218365403|emb|CAR03126.1| protease IV (signal peptide peptidase) [Escherichia coli S88]
 gi|226900474|gb|EEH86733.1| protease IV [Escherichia sp. 3_2_53FAA]
 gi|315286440|gb|EFU45875.1| signal peptide peptidase SppA [Escherichia coli MS 110-3]
 gi|323952272|gb|EGB48145.1| signal peptide peptidase SppA [Escherichia coli H252]
 gi|323956534|gb|EGB52275.1| signal peptide peptidase SppA [Escherichia coli H263]
          Length = 618

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 99.3 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAARETDSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 306


>gi|311279913|ref|YP_003942144.1| signal peptide peptidase SppA, 67K type [Enterobacter cloacae SCF1]
 gi|308749108|gb|ADO48860.1| signal peptide peptidase SppA, 67K type [Enterobacter cloacae SCF1]
          Length = 617

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 79/281 (28%), Positives = 130/281 (46%), Gaps = 15/281 (5%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATAL 69
            ++   ++  +  +  S  VA I   G I D QE            +I     D    A+
Sbjct: 309 AVSFYDYTLKTPSDQGSA-VAVIFANGAIIDGQETPGNVGGDTTAAQIRDARLDPKVKAI 367

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           ++ ++SPGGS  A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L
Sbjct: 368 VLRVNSPGGSVSASEVIRAELAAAREANKPVVVSMGGMAASGGYWISTPANYIVANASTL 427

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIG+      V+  L  LGV    V +SP+       S + P+  QMMQ  ++S Y  
Sbjct: 428 TGSIGIFGVINTVENSLSNLGVHTDGVSTSPLADVSITKS-LPPEVQQMMQLSIESGYKR 486

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           F+ LV++SR+   ++   ++ G +WTG +AK  GL+D +G  ++       L        
Sbjct: 487 FITLVAQSRHSTPEQVDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKL-KQWH 545

Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           I  +    +++   L +L+ S  +  ++P   Q  +    A
Sbjct: 546 ISYYQEEPSFFSMMLDSLTGS--VRASLPEALQAFLPAPLA 584



 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 102/281 (36%), Gaps = 39/281 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + FV + +    +++L LV + V     S+  +  +     + I G + D          
Sbjct: 19  LNFVRELVLNVFFILLVLVCVGVWMQLSSNIAQSTARGALLLDISGVVVDKPSATSKIGT 78

Query: 52  -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91
                              ++++ I +   D + T +++ L +  G+     + I +A++
Sbjct: 79  LSRQLLGASSDRLQENSLFDIVQTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALR 138

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           + ++    +  V +  +   Y ++  +N I  +   +V   G      Y K  LDKL V+
Sbjct: 139 EFRDSGKPVFAVGDSYSQGQYYLASFANKIFLSPQGIVDLHGFATNGLYYKSLLDKLKVT 198

Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT----- 204
               +    K+   PF   +++P A +     +   +  ++  V+ +R I  ++      
Sbjct: 199 THVFRVGTYKSAVEPFIRDDMSPAAKEADSRWIGELWQNYLTTVAANRQITPEQVFPGAQ 258

Query: 205 ---LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
                L      T   A    L+D +    +V + L     
Sbjct: 259 GMLDGLRKVDGDTAQYALNNKLVDSLATSAQVEKVLTKQFG 299


>gi|308231619|ref|ZP_07663897.1| signal peptide peptidase SppA, 36K type [Mycobacterium tuberculosis
           SUMu001]
 gi|308369979|ref|ZP_07666834.1| signal peptide peptidase SppA, 36K type [Mycobacterium tuberculosis
           SUMu002]
 gi|308216725|gb|EFO76124.1| signal peptide peptidase SppA, 36K type [Mycobacterium tuberculosis
           SUMu001]
 gi|308325733|gb|EFP14584.1| signal peptide peptidase SppA, 36K type [Mycobacterium tuberculosis
           SUMu002]
          Length = 289

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 120/246 (48%), Gaps = 5/246 (2%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEM 106
                +   +  ++ DDS +A+++ + SPGGS  A E I+R + + ++R KPV+  +  +
Sbjct: 24  AGGDTIAAALREVAADDSVSAIVLRVDSPGGSVTASETIWREVARARDRGKPVVASMGAV 83

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           AAS GY +S  ++ IVA   ++ GSIGV+     V+   D+LGV   +V+++      S 
Sbjct: 84  AASGGYYVSMGADAIVANPGTITGSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSI 143

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
            +   P      +   D  Y  FV  V+E R +  D   V++ GR+WTGA+A   GL+D 
Sbjct: 144 DAPFTPDQQAHREAEADLFYSDFVERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDE 203

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQT 282
           +GG     +    L       +++  + P +  +  ++    +   ++ L D +  +   
Sbjct: 204 LGGLRTAVRRAKVLAGLDEDTEVRIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLAR 263

Query: 283 KVQGLW 288
            + G+ 
Sbjct: 264 SIVGIV 269


>gi|91775677|ref|YP_545433.1| peptidase S49 [Methylobacillus flagellatus KT]
 gi|91709664|gb|ABE49592.1| peptidase S49 [Methylobacillus flagellatus KT]
          Length = 312

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 17/275 (6%)

Query: 6   KKIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERI 57
           ++    +  L  + L ++ F    W+     +  H A I I G I      ++  +I  +
Sbjct: 31  RQWGIFFKSLGFLYLFIILFYITGWNEGRSASMEHTALIDIDGVIGSDDVVNADSVIASL 90

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAGYLI 114
           +          +I+ ++SPGGS      I   I++   +    P+   V ++ AS GY I
Sbjct: 91  KSAYESKGTKGIILRINSPGGSPVQAGIINDEIKRQRKLHPNIPIYAVVQDVCASGGYYI 150

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I   + S+VGSIGVL         +DK+GV  + + +   K    PFS V+PK 
Sbjct: 151 AVAADKIFVDKASIVGSIGVLMDGFGFTGAMDKVGVERRLMTAGENKGMLDPFSPVSPKH 210

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
            +  Q ++D  +  F+ +V E R     +T     G  W+G  +  +GL D  G  + V 
Sbjct: 211 REFAQQMLDQIHAQFIAVVREGRGKRLKETPETFSGLFWSGESSVAMGLADGFGSSDYVA 270

Query: 235 QSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           + +           + D+   +       K L  S
Sbjct: 271 REVIKQ------ENLVDFTAKEGLADRFAKRLGAS 299


>gi|170717625|ref|YP_001784706.1| signal peptide peptidase SppA, 67K type [Haemophilus somnus 2336]
 gi|168825754|gb|ACA31125.1| signal peptide peptidase SppA, 67K type [Haemophilus somnus 2336]
          Length = 621

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 133/265 (50%), Gaps = 17/265 (6%)

Query: 5   LKKIKTRYVM-----LSLVTLTVVYFSWSSHVEDN-SPHVARIAIRGQIEDSQE------ 52
            +KI  R+++     L  V          +       P +A + + G I D +       
Sbjct: 287 REKIIKRWIVNSDDKLDFVEFEDYLAILKNRFAQPTQPAIAVVNVEGAIVDGESDEQNVG 346

Query: 53  ---LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAA 108
              + + +   + D +  A+++ ++SPGGSA+A E I + +  ++   KPV+  +  MAA
Sbjct: 347 GDSIAQLLREANDDPNIKAVVLRVNSPGGSAFASEIIRQEVDNLQKSGKPVVVSMGAMAA 406

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
           S GY IS  ++ IVA   ++ GSIG+   +P  +  + K+GV+   V ++ +  +   FS
Sbjct: 407 SGGYWISSTADYIVADPNTITGSIGIFAMFPTFEKSMQKIGVNADGVATTDVVMKSH-FS 465

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
            ++  + +++Q  ++  Y  F+ +VS  RN+   +   ++ G++W+G +A    L+D +G
Sbjct: 466 PLSKISSEIIQLEIEHGYDQFLDVVSRGRNLSKTQVDKIAQGQVWSGFDAYTYKLVDQLG 525

Query: 229 GQEEVWQSLYALGVDQSIRKIKDWN 253
             ++  +    L + +S  +IKD++
Sbjct: 526 SFDDAVEKARELVIQKSSEEIKDFS 550



 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 126/319 (39%), Gaps = 38/319 (11%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------ 51
           V+  +   +V+L +   +V     +     +      + + G + D++            
Sbjct: 22  VMNIVFLFFVLLIVAVFSVNSSMSNKVDLTHFKGALLLNLDGYLADNRSDDTAWQELLLE 81

Query: 52  -------------ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRK 97
                        +++  I+   +D   TAL++ L+   G    A   I +AIQ  K  K
Sbjct: 82  LGNQHVPRKISTFDVVNAIQAAKKDPKITALVLDLNYFDGKDIPALTYIGKAIQAFKASK 141

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +    +    + YL++  +++I+      V   G++ +  Y K   +KL ++    + 
Sbjct: 142 KPVIAYADNYTQSQYLLASYADVILLNPQGEVAIEGMVAENLYFKSLFNKLEITPHIFRV 201

Query: 158 SPMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-----LSDG 210
              K+   PF   +++ K+ +     ++  +  + ++V+E+R+IP  + L      LS+ 
Sbjct: 202 GTYKSAVEPFMLDKMSEKSRENTSRWLNQLWKSYQQIVAENRDIPLAQVLPDSKTYLSEL 261

Query: 211 RIWTGAE---AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           +   G +   AKK GLI  +   +E  + +    +  S  K+ D+   ++Y        +
Sbjct: 262 KALNGNQTEYAKKRGLITELAVTQE-REKIIKRWIVNSDDKL-DFVEFEDYLAILKNRFA 319

Query: 268 ISSLLEDTIPLMKQTKVQG 286
             +     +  ++   V G
Sbjct: 320 QPTQPAIAVVNVEGAIVDG 338


>gi|156934334|ref|YP_001438250.1| protease 4 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532588|gb|ABU77414.1| hypothetical protein ESA_02165 [Cronobacter sakazakii ATCC BAA-894]
          Length = 616

 Score =  135 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 71/277 (25%), Positives = 121/277 (43%), Gaps = 22/277 (7%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPG 77
             +   +    +A +   G I D +E            +I     D    A+++ ++SPG
Sbjct: 315 PVNKPSEQGESIAVVFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPG 374

Query: 78  GSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GS  A E I + +   K   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+  
Sbjct: 375 GSVTASETIRQELAAAKEAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFG 434

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
               V+  LD +GV    V +SP+         + P+  ++MQ  +++ Y  F+ LV++S
Sbjct: 435 VINTVENSLDAIGVHTDGVATSPLAEVSVT-KALPPEVQKLMQLTIENGYQRFIGLVAQS 493

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           RN    +   ++ G +WTG +AK+ GL+D +G  ++  +    L        +  +    
Sbjct: 494 RNKTPQQIDQIAQGHVWTGEDAKQNGLVDSLGDFDDAVKKAAELAKL-KSWHLDFYQDEP 552

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
            +    + NL+ S              +      W P
Sbjct: 553 GFIDMVIANLTGSV----------HAMLPQALQAWLP 579



 Score = 85.4 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 78/208 (37%), Gaps = 11/208 (5%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASA 110
           +++  I +   D + T +++ L    G+     + I +A+++ ++    +  + +  +  
Sbjct: 97  DIVNAIRQAKDDRNITGIVLDLKDFAGADQPSMQYIGKALREFRDAGKPVYAIGDSYSQG 156

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168
            Y ++  +N I  +    V   G      Y K  LDKL V+    +    K+   PF   
Sbjct: 157 QYYLASFANKIWLSPQGTVDLHGFATNGLYYKSLLDKLKVTTHVFRVGTYKSAVEPFIRD 216

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKK 220
           +++P A +     +   +  ++  ++ +R +P  +           L      T   A  
Sbjct: 217 DMSPAAREADSRWIGELWQNYLGTIAANRQVPASQIFPGAQAMIAGLEAAGGDTAKYALD 276

Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRK 248
             L+D +     V ++L          K
Sbjct: 277 NKLVDELASSATVDKALVKQFGWSDKDK 304


>gi|304408856|ref|ZP_07390477.1| signal peptide peptidase SppA, 67K type [Shewanella baltica OS183]
 gi|307302859|ref|ZP_07582614.1| signal peptide peptidase SppA, 67K type [Shewanella baltica BA175]
 gi|304352677|gb|EFM17074.1| signal peptide peptidase SppA, 67K type [Shewanella baltica OS183]
 gi|306913219|gb|EFN43641.1| signal peptide peptidase SppA, 67K type [Shewanella baltica BA175]
          Length = 615

 Score =  135 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 14/268 (5%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                V  I   G I            +   E + +   D    AL++ + SPGGSA+A 
Sbjct: 322 VEQDSVGIIVASGTILNGTQPAGQIGGESTAELLRKARFDKHVKALVLRVDSPGGSAFAS 381

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + +  +K   KPV+  +  +AAS GY IS +++ I A  T+L GSIG+       +
Sbjct: 382 EQIRQELLALKAAGKPVVVSMGSLAASGGYWISASADYIFATPTTLTGSIGIFGMITTFE 441

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L  +GV    V +S         + ++P+   ++Q  ++  Y  F+ LV++ R +  +
Sbjct: 442 DSLASIGVHTDGVSTSEWAGLSVTRT-LSPQVEAIIQRHIERGYLDFISLVAKERKMTIE 500

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFC 261
           +   ++ GR+W+G +A ++GL+D +G  +E       L        ++ +        F 
Sbjct: 501 QVDKIAQGRVWSGKKALELGLVDELGDLDEAIAKAAKLADMTLFDTRVIEQELTPEQRFM 560

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                S+SS L  ++   + + ++ + A
Sbjct: 561 QQMFASVSSYLPASLS--QSSMLEQMLA 586



 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 90/273 (32%), Gaps = 36/273 (13%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51
           +K+    +   ++   ++    S  ++        + + G I D +              
Sbjct: 23  RKLILNLIFFGILAAIIISIGSSEDIQVEDNSALVLNLAGSIVDQKQQVDPLEAAFKQGQ 82

Query: 52  -----------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRKPV 99
                      +++  I+  ++D   + L+++            ++I  A+ + K     
Sbjct: 83  NANADGEILLADVLYVIDNAAQDQRISTLVLNLADLKRAGISKLQSIGDALNRFKESGKK 142

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
           +  +        Y ++  ++ I       V   G+     Y K  LDKL +     +   
Sbjct: 143 VVAIGNYYEQNQYFLASFADTIYLNPQGGVSLDGLSMYNQYFKSALDKLKIKAHIFRVGT 202

Query: 160 MKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSD 209
            K+   P+   +++  A +    ++   +  + + V+ +RNI  +            L  
Sbjct: 203 FKSAVEPYMRDDMSDAAREASSALLADVWQSYTQTVAGNRNIEPNSLVPDATTYLAELDK 262

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
               + A A  +  +D +   E+  Q++     
Sbjct: 263 ANGDSAAMAINMKWVDSLATTEDFRQTMLETVG 295


>gi|300818408|ref|ZP_07098618.1| signal peptide peptidase SppA [Escherichia coli MS 107-1]
 gi|300529048|gb|EFK50110.1| signal peptide peptidase SppA [Escherichia coli MS 107-1]
          Length = 666

 Score =  135 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 367 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 426

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 427 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 486

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             ++  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 487 TTIENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 545

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 546 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 604

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 605 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 633



 Score = 98.5 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 67  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 126

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 127 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 186

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 187 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 246

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +    +
Sbjct: 247 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRLIPAQQVFPGA 306

Query: 209 DGRIW--------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            G +         T   A +  L+D +    E+ ++L          K
Sbjct: 307 QGLLVGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 354


>gi|71278898|ref|YP_269300.1| signal peptide peptidase SppA, 67K type [Colwellia psychrerythraea
           34H]
 gi|71144638|gb|AAZ25111.1| signal peptide peptidase SppA, 67K type [Colwellia psychrerythraea
           34H]
          Length = 637

 Score =  135 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 123/265 (46%), Gaps = 11/265 (4%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPG 77
            +   E +   VA I  +G I D              + + +   +D   A+++ + SPG
Sbjct: 325 SAELAEKSHDKVAIIVAKGTILDGTQKPGTIGGDSTAKLLRKARNNDDVKAVVLRVDSPG 384

Query: 78  GSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GSAYA E I + ++ +K   KPV+  +   AAS GY IS  ++ I AA +++ GSIG+  
Sbjct: 385 GSAYASEIIRQEVELLKKAGKPVVASMGTYAASGGYWISAPADKIYAAPSTITGSIGIFG 444

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                +  L K+G+    V ++ +    SP   + P    + Q  ++  Y  F++LV+ +
Sbjct: 445 MMMTFEDTLSKMGIYTDGVGTTDIAG-FSPTQALTPGMANLFQLSINRGYQEFIQLVATN 503

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R++  ++   ++ GR+W+G +AK++GL+D +G   +   +   L   +    +       
Sbjct: 504 RDMTLEEVDAIAQGRVWSGKKAKELGLVDELGNLTDAVVAAATLAKLEQYDTLLIEKEQS 563

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQ 281
           +      + L  SS L       ++
Sbjct: 564 SRNKIMQQLLGQSSTLVSLFSANEE 588



 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 103/313 (32%), Gaps = 38/313 (12%)

Query: 1   MEFVLKKIKTR-YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + F    +    + +L    + V+  S    V         + + G + + +        
Sbjct: 19  LTFTRSVVLNLVFFILLFSFIGVILSSGEEQVTVPEKTALVLNLVGDVVEQKREVDPMEA 78

Query: 52  ------------------ELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIFRAIQK 92
                             ++I+ I +  +DD    L++ L           + I  A++ 
Sbjct: 79  FLSEAMEQQDDKPEVLLTDIIDVISKAKKDDRVEILVLQLQGLNRAGLTKLQDIAAALED 138

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            K+    I  + +  +   Y ++  +N I       +   G      Y K  L+KL ++ 
Sbjct: 139 FKSSGKQIIALGDQFSQDQYYLASTANDIWLNPQGFMLLDGYGRYNMYFKSALEKLAINQ 198

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
              +    K+   PF   +++  A +  +  +   +  +   V+  R    D      D 
Sbjct: 199 HIFRVGTFKSAVEPFIRDDMSDAAKKANKLWLADLWMQYKEDVAARRGFGVDNFDENIDN 258

Query: 211 RI--WTGAE------AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
            +  ++ A+      A K   +D +  ++E+   L  L  +       +    KNY    
Sbjct: 259 LVAKFSAADSSFAQYALKNNWVDQLKSRQEMRSELIELVGENKKGDSYNHIGYKNYIAAT 318

Query: 263 LKNLSISSLLEDT 275
             ++  S+ L + 
Sbjct: 319 SSSIEESAELAEK 331


>gi|119511127|ref|ZP_01630245.1| protease IV [Nodularia spumigena CCY9414]
 gi|119464222|gb|EAW45141.1| protease IV [Nodularia spumigena CCY9414]
          Length = 611

 Score =  135 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 121/266 (45%), Gaps = 9/266 (3%)

Query: 33  DNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           ++   +A +   G+I D                + ++  D+   A+++ ++SPGGSA A 
Sbjct: 314 NSQNKIAVVYAEGEIVDGRGEDQQIGGDRFARILNQLRHDNDVKAVVLRINSPGGSATAS 373

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           E + R +Q  +  KPV+  + ++AAS GY I+  SN I A  T++ GSIGV       + 
Sbjct: 374 EIMQREVQLTREVKPVVVSMGDIAASGGYWIATDSNRIFAEPTTITGSIGVFGVLLNGQK 433

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
             +  G++  +VK++      +P    +P+ +++ Q  V+  Y+ F+  V + RN+P  K
Sbjct: 434 LANDNGITWDTVKTARYADSQTPTRPKSPQELEIYQRSVNRIYNLFLDRVVQGRNLPAPK 493

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ GR+W+G  AK++GL+D +GG     +         +  +++++           
Sbjct: 494 VAEIAQGRVWSGISAKQIGLVDEIGGLNAAIEYAAKEAKLDNDWELQEYPRVSTLEERFF 553

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289
                       +  +       L A
Sbjct: 554 GRAIQEITTMLGMAGVSVQPSHPLMA 579



 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/302 (18%), Positives = 114/302 (37%), Gaps = 31/302 (10%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS----------------------QEL 53
            +  L  V  S  +  +     +    +   I D+                      + +
Sbjct: 30  IIFLLFAVTTSRDTTPQVKDQSIVVFDLSMNITDTPPGSSELLQQALSGAEAPRMTLRSV 89

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGE----AIFRAIQKVKNRKPVITEVHEMAAS 109
           ++ +E+   D     + +  +    S   G      I +A++K +     +       + 
Sbjct: 90  LDTLEKARLDPRIVGIYLDATGTSASGNMGFASLTEIRQALKKFRESGKKVVAYGVGLSE 149

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y +S  ++ I      L+   G+  Q  ++   LDK G+ ++ V+    K    PF  
Sbjct: 150 KDYYLSSVADTITLNPIGLMEVNGLTSQPTFLAGALDKFGIGVQVVRVGKFKGAVEPFIL 209

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDV 226
            E++P+  Q +Q ++D  +  +   VS SR +   +   ++D   + T  EAK+ GL+D 
Sbjct: 210 QELSPENRQQIQKLLDDVWGDWRTTVSSSRKMTPQQLQAIADTQALLTATEAKERGLVDQ 269

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM--KQTKV 284
           VG  +EV   L  L       +  +    +NY     K+L +    ++ I ++  +   V
Sbjct: 270 VGYLDEVVNDLKKLTASDETDRTFEQINLRNYAQVPGKSLGVERNSQNKIAVVYAEGEIV 329

Query: 285 QG 286
            G
Sbjct: 330 DG 331


>gi|218689707|ref|YP_002397919.1| protease 4 [Escherichia coli ED1a]
 gi|218427271|emb|CAR08161.2| protease IV (signal peptide peptidase) [Escherichia coli ED1a]
          Length = 618

 Score =  135 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 98.9 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 306


>gi|319776392|ref|YP_004138880.1| protease IV (signal peptide peptidase) [Haemophilus influenzae
           F3047]
 gi|317450983|emb|CBY87213.1| protease IV (signal peptide peptidase) [Haemophilus influenzae
           F3047]
          Length = 615

 Score =  135 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 127/256 (49%), Gaps = 14/256 (5%)

Query: 36  PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             +A + + G I D +          ++  + +   D+S  A+I+ ++SPGGSA+A E I
Sbjct: 322 NKIAVVNVEGTIIDGESDEENAGGDTIVRILRKAHDDNSVKAVILRVNSPGGSAFASEII 381

Query: 87  FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
            +  + ++   KPVI  +  MAAS GY IS  ++ I+A   ++ GSIG+   +P  +  +
Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFAMFPTFENSI 441

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV+   V ++ +    + F  +      + Q  ++  Y  F+ +VS+ R +   +  
Sbjct: 442 KKIGVNADGVSTTELAKTSAFF-PLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVD 500

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L+ G++W G++A + GL+D +G   E       L   +    ++D++     WF D   
Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 557

Query: 266 LSISSLLEDTIPLMKQ 281
             IS+LL DT    ++
Sbjct: 558 SLISTLLRDTKKGAQE 573



 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 110/287 (38%), Gaps = 44/287 (15%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA----RIAIRGQIEDSQE------- 52
            ++ +    V L  V L V   S+SS  + ++  +      + + G + D+++       
Sbjct: 14  FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTTLIGDGALLLNLDGYLADNRDETLRWQD 73

Query: 53  ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93
                             ++  I++   D     L++ L+   G    A + I  AI   
Sbjct: 74  ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHF 133

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K+    +    +  +   Y ++  ++ I       V   G+  +  Y K  LDKL V+  
Sbjct: 134 KDAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF  ++++ +A   MQ  +   ++ +V  VSE+RNI  D    L + +
Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDNI--LPNAK 251

Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            +              A++ GL+  V  + ++ + L AL    S  K
Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKKLAALFGKGSDGK 298


>gi|148653534|ref|YP_001280627.1| signal peptide peptidase SppA, 36K type [Psychrobacter sp. PRwf-1]
 gi|148572618|gb|ABQ94677.1| signal peptide peptidase SppA, 36K type [Psychrobacter sp. PRwf-1]
          Length = 354

 Score =  135 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 115/259 (44%), Gaps = 11/259 (4%)

Query: 29  SHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           S V+   PH+A + ++G I      ++ ++   +        A A++++++SPGGS    
Sbjct: 88  SSVDVTKPHIAVVDLQGVISADNTANAYDVSAALSEAFESKGAKAVVLNINSPGGSPVQS 147

Query: 84  EAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           + I++ +  +      K +   + +M AS  Y I+ A++ I    +SLVGSIGV+     
Sbjct: 148 DEIWKTMMSLRKEHPNKKLYAVIGDMGASGAYYIASAADEIYVNPSSLVGSIGVIMPGYN 207

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           +K  +DK GV   ++ +   K   S   ++     Q ++ V+D+++  F+  V + R   
Sbjct: 208 LKGLMDKYGVKDATLTAGEYKDILSMSRDLTDFEKQHIKGVLDNTHKHFIDAVKKGRGDR 267

Query: 201 YD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
               +   L  G  WTG +A  +GL D  G    + + L  +        +       N 
Sbjct: 268 LKNPEENKLFTGLFWTGEQAIALGLADKKGSLMSLEKEL-DIDNVVDYTPVDPMQMFLNN 326

Query: 259 WFCDLKNLSISSLLEDTIP 277
           +   L +   SS+    +P
Sbjct: 327 FALQLGSGIGSSVELKLLP 345


>gi|298492790|ref|YP_003722967.1| signal peptide peptidase SppA ['Nostoc azollae' 0708]
 gi|298234708|gb|ADI65844.1| signal peptide peptidase SppA, 67K type ['Nostoc azollae' 0708]
          Length = 611

 Score =  135 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 112/242 (46%), Gaps = 9/242 (3%)

Query: 33  DNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           ++   +A +   G+I D              +   +I +D    ++++ ++SPGGSA   
Sbjct: 314 NSENKIAVVYAEGEIVDGKGEDGEIGGDRFAKIFNKIRQDQDVKSVVLRINSPGGSATVS 373

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           E I R I+  +  KPVI  + ++AAS GY I+  SN I A   ++ GSIGV       + 
Sbjct: 374 EIIQREIKLTRQAKPVIVSMGDVAASGGYWIASDSNRIFAETNTITGSIGVFGLLLNGQK 433

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
                G++  +VK++      +     +P+ + + Q  V+  Y+ F+  V++ R +P  K
Sbjct: 434 LAKNNGITWDTVKTAQYADNQTVSRPKSPQELALYQRSVNRIYNMFINKVAQGRKLPQQK 493

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ GR+W+G  AK++GL+D +GG     +            +++++    +      
Sbjct: 494 VAEIAQGRVWSGVAAKEIGLVDEIGGLNVAIEYAAKQAKLGKNWELEEYPRVTSLEERLF 553

Query: 264 KN 265
             
Sbjct: 554 GK 555



 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 59/302 (19%), Positives = 109/302 (36%), Gaps = 31/302 (10%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS----------------------QEL 53
               + +   S  +  +     +    +  +I DS                      +++
Sbjct: 30  LFFLIVIAATSKDTGPQVKDKSILVFDLSMKITDSQPSSSDFLKKTLIGVNEDQITLRKV 89

Query: 54  IERIERISRDDSATALIVS---LSSPGGSAYAGE-AIFRAIQKVKNRKPVITEVHEMAAS 109
           IE +E+  RD     + +      +  G  YA    I + + K +     I         
Sbjct: 90  IETLEKAQRDPRIVGIYIDATKSGAASGLGYASLKEIRQGLDKFRASGKKIIAYSTDWNE 149

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y +S  +N IV     L+   G+  Q  ++   L K GV I+ V+    K    PF  
Sbjct: 150 REYYLSSVANNIVLNPVGLMEINGLSSQPVFLAGALQKYGVGIQVVRVGKFKGAVEPFIL 209

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDV 226
            +++P+  Q  Q ++D  +  +   V +SR I   K   ++D + I     +K  GL+D 
Sbjct: 210 DKLSPENRQQTQKLLDDVWGEWRTSVGKSRKIQPQKLQAIADSQPILEANTSKTNGLVDQ 269

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM--KQTKV 284
           V  Q++V   L  L       K        +Y     K++ +    E+ I ++  +   V
Sbjct: 270 VAYQDQVVADLKKLTASDKDDKSFRQIHLSDYAEVPGKSMGVERNSENKIAVVYAEGEIV 329

Query: 285 QG 286
            G
Sbjct: 330 DG 331


>gi|226952101|ref|ZP_03822565.1| possible signal peptide peptidase SppA [Acinetobacter sp. ATCC
           27244]
 gi|226837157|gb|EEH69540.1| possible signal peptide peptidase SppA [Acinetobacter sp. ATCC
           27244]
          Length = 340

 Score =  135 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 70/302 (23%), Positives = 130/302 (43%), Gaps = 27/302 (8%)

Query: 4   VLKKIKTRYVMLSLVTLTVV--YFSWSSHVEDNSPHVARIAIRGQI--------EDSQEL 53
             K +   Y++  L+ +       S  +     S H+A + I G I         +S + 
Sbjct: 46  FFKFLGFAYLLFVLIAMGKGCSTSSTKTTTNITSDHLAVVDIIGTIDSSSGSSTVNSDDT 105

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASA 110
            + ++R      + A+ ++++SPGGS    + I++ I+ +      K V   + +M AS 
Sbjct: 106 NKALKRAFEASGSKAVALNINSPGGSPVQSDEIWQEIRYLKKQHPDKKVYAVIGDMGASG 165

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
            Y I+ A++ I+   +SLVGSIGV+     +     KLG+  +++ S   K   S    +
Sbjct: 166 AYYIASAADEIIVNPSSLVGSIGVIMPNYGLSGLAQKLGIEDRTLTSGSNKDILSMTKPL 225

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGG 229
           +P   Q +Q V+D+ +  F+  V E R          +  G  WTG +A  +G+ D  G 
Sbjct: 226 DPAQKQHVQSVLDNVHAHFINAVKEGRGKRLKSNDPAIFSGLFWTGEQAVALGVADRSGS 285

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI------SSLLEDTIPLMKQTK 283
              + + L       ++ +  D+   +N +   L  +        SS L D +   +  K
Sbjct: 286 MTTLMRDL-------NVSQKVDYTVQRNPFESILGRMGAKIGEGISSSLADQLQTQQNAK 338

Query: 284 VQ 285
           +Q
Sbjct: 339 IQ 340


>gi|294651086|ref|ZP_06728423.1| signal peptide peptidase SppA [Acinetobacter haemolyticus ATCC
           19194]
 gi|292823035|gb|EFF81901.1| signal peptide peptidase SppA [Acinetobacter haemolyticus ATCC
           19194]
          Length = 340

 Score =  135 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 70/302 (23%), Positives = 130/302 (43%), Gaps = 27/302 (8%)

Query: 4   VLKKIKTRYVMLSLVTLTVV--YFSWSSHVEDNSPHVARIAIRGQI--------EDSQEL 53
             K +   Y++  L+ +       S  +     S H+A + I G I         +S + 
Sbjct: 46  FFKFLGFAYLLFVLIAMGKGCSTSSTKTTTNITSDHLAVVDIIGTIDSSSGSSTVNSDDT 105

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASA 110
            + ++R      + A+ ++++SPGGS    + I++ I+ +      K V   + +M AS 
Sbjct: 106 NKALKRAFEASGSKAVALNINSPGGSPVQSDEIWQEIRYLKKQHPDKKVYAVIGDMGASG 165

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
            Y I+ A++ I+   +SLVGSIGV+     +     KLG+  +++ S   K   S    +
Sbjct: 166 AYYIASAADEIIVNPSSLVGSIGVIMPNYDLSGLAQKLGIEDRTLTSGSNKDILSMTKPL 225

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGG 229
           +P   Q +Q V+D+ +  F+  V E R          +  G  WTG +A  +G+ D  G 
Sbjct: 226 DPAQKQHVQSVLDNVHAHFINAVKEGRGKRLKSNDPAIFSGLFWTGEQAVALGVADRSGS 285

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI------SSLLEDTIPLMKQTK 283
              + + L       ++ +  D+   +N +   L  +        SS L D +   +  K
Sbjct: 286 MTTLMRDL-------NVSQKVDYTVQRNPFESILGRMGAKIGEGISSSLADQLQTQQNAK 338

Query: 284 VQ 285
           +Q
Sbjct: 339 IQ 340


>gi|33240745|ref|NP_875687.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|33238273|gb|AAQ00340.1| Periplasmic serine protease (ClpP class) [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 269

 Score =  135 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 70/259 (27%), Positives = 128/259 (49%), Gaps = 4/259 (1%)

Query: 33  DNSPHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            +   +ARI I G I  S    +++ + ++  D    AL++ + SPGG+    + I  A+
Sbjct: 8   KSKKRMARIIIDGPINGSTRKLVLKALRQV-EDREFPALLLRIDSPGGTVGDSQEIHAAL 66

Query: 91  QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
            +++ +   ++     ++AS G  +  A+  I+A   ++ GSIGV+ +   +   L+K+G
Sbjct: 67  LRLREKGCHIVASFGNISASGGVYVGVAAEKIIANPGTITGSIGVILRGNNLSKLLEKIG 126

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +  +++KS   K   SP   ++P+   ++Q ++DSSY  FV  V+E R +  +     +D
Sbjct: 127 IKFETIKSGLYKDILSPDRALSPEERSLLQSLIDSSYEQFVTAVAEGRKLNKEDVKSFAD 186

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           GR++TG +AK++GLID  G + +       L       +      PK      L    + 
Sbjct: 187 GRVFTGTQAKQLGLIDDTGDENDARLLAAELADLDQKVRPITLGRPKKKLIGLLPGGKMF 246

Query: 270 SLLEDTIPLMKQTKVQGLW 288
           S L +TI +   T  Q LW
Sbjct: 247 SKLLETISMELSTSGQILW 265


>gi|301026499|ref|ZP_07189929.1| signal peptide peptidase SppA [Escherichia coli MS 69-1]
 gi|300395517|gb|EFJ79055.1| signal peptide peptidase SppA [Escherichia coli MS 69-1]
          Length = 618

 Score =  135 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 98.9 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGVLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 306


>gi|258648041|ref|ZP_05735510.1| signal peptide peptidase SppA [Prevotella tannerae ATCC 51259]
 gi|260851896|gb|EEX71765.1| signal peptide peptidase SppA [Prevotella tannerae ATCC 51259]
          Length = 587

 Score =  135 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 70/280 (25%), Positives = 126/280 (45%), Gaps = 17/280 (6%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------ELIERIERISRDDSATA 68
              S     +     VA     G I D+               ++I+ ++ ++ DD+  A
Sbjct: 287 FTLSLLETEKGRKNKVAVYYAYGDIVDASTSSGGLRGDEIVGNQVIQDLDELANDDNIKA 346

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           +++ ++S GGSAYA E I+ A++ +K +KPV+  +   AAS GY ISC ++ I+A  T++
Sbjct: 347 VVLRVNSGGGSAYASEQIWHAVELLKKKKPVVVSMGGTAASGGYYISCGADKIIADPTTV 406

Query: 129 VGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
            GSIG+    P     + +KLG+    VK++      +    +     + +Q+ V+  Y 
Sbjct: 407 TGSIGIFGMIPDFSGLMTEKLGLHFDIVKTNEASDFGAMGRGMTAAEGEALQNYVNRGYG 466

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F++ V+  RN   ++   ++ GR+WTG +A K+GLID +G  E+  +    L   +   
Sbjct: 467 LFLKRVANGRNKTVEQINQVAQGRVWTGRQALKLGLIDQLGTLEDAIKEAARLAKLEKYD 526

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
                 P    W  D         ++  +          L
Sbjct: 527 --VRRVPYITDWLTDYLQRQQDDYMDRKLRRSLGVYYDPL 564



 Score = 95.4 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 91/271 (33%), Gaps = 25/271 (9%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE------------------- 48
           +    + + LV L VV  S S         V +I + G I                    
Sbjct: 18  MGAFTMAMGLVMLFVVSLSDSMKPTIARHSVLKITLSGTISERSAGANPLASILGNPMAD 77

Query: 49  --DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
                +++  I     +     + +          + + I +A+   K     I    + 
Sbjct: 78  EQGLDDILSAIRVAKDNKRIEGIYLDGGVVSTDVASLQEIRKALIDFKKSGKFIVSYADS 137

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            +   Y +   ++ ++     ++   G+     + K  L+K+GV ++  +    K+   P
Sbjct: 138 YSQGSYYVCSVADKVLLNPVGMLDWHGLSSNPIFYKDLLEKVGVKMQVFRVGTYKSFVEP 197

Query: 167 F--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD--GRIWTGAEAKKVG 222
           +  +E++P+  +    ++   +      V++SR +P +     ++        +      
Sbjct: 198 YTRTEMSPENREQTAFLLGGLWKDLCTEVAQSRRLPVEAINNYANQYQNFADPSVYINEK 257

Query: 223 LIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           L+D +   EEV   L  +     +  +  + 
Sbjct: 258 LVDKLVYIEEVRNVLRDMVGGNRVSMVDPFT 288


>gi|221134873|ref|ZP_03561176.1| signal peptide peptidase SppA, 67K type [Glaciecola sp. HTCC2999]
          Length = 544

 Score =  135 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 117/252 (46%), Gaps = 14/252 (5%)

Query: 30  HVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSA 80
                   +A +  +G I D                + +   DD+  A+++ + SPGGSA
Sbjct: 248 PKTVKGDAIAVVVAKGTILDGTQSPGTIGGDSTARLLRKARLDDNVKAVVMHVDSPGGSA 307

Query: 81  YAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +A E I + ++++    KPV+  +   AAS GY IS +++ I+A+ +++ GSIG+     
Sbjct: 308 FASEIIRQEVEELRHAGKPVVALMGTYAASGGYWISASADKIIASPSTITGSIGIFGMLM 367

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
             +  L  LGV    V+++      S    +      ++Q  ++  Y  F+ LV+E+RN+
Sbjct: 368 TYEESLAYLGVYSDGVQTTEF-GFNSLAKTLPDSLGNLIQRNIERGYEKFITLVAENRNM 426

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI---KDWNPPK 256
             ++   ++ GR+W G  A ++GL+D +G   E   S   L            +  +P +
Sbjct: 427 TLEQVDSIAQGRVWIGTTALELGLVDELGTLNEALSSAAELAELTDYEVTYIERTLSPKE 486

Query: 257 NYWFCDLKNLSI 268
            +    L+N S+
Sbjct: 487 QFIQELLRNASV 498



 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 89/254 (35%), Gaps = 17/254 (6%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
            + +++ ++   +D    AL++ LS  GG   +    +   I   K  +  +  + +  +
Sbjct: 20  DRNVVKALDNAKQDKRIAALVLDLSYFGGGGLHKLRTVAATIDDFKTSEKPVIAMGDYFS 79

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167
            + Y ++  ++ I       +   G      Y K  ++KL V     K    K+   P+ 
Sbjct: 80  QSQYYLAAHADKIYLNPEGGMLFEGYSRNRMYYKEAIEKLKVKTHVFKVGTFKSAIEPYI 139

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEA 218
            ++++  A +  +  +   +  +   V+ +RNI  D                       A
Sbjct: 140 RNDMSDAAREANEAWLSVYWDQYKHDVAAARNIDVDNFDDTVANFMPKFEAANGDLAQYA 199

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSI------RKIKDWNPPKNYWFCDLKNLSISSLL 272
            + G +D +  +E++ Q +  L  +             ++    N  F         +++
Sbjct: 200 LQNGWVDELKTREQMRQDMIDLVGESDSGNGYKGVTYSEYLQKINLPFPKTVKGDAIAVV 259

Query: 273 EDTIPLMKQTKVQG 286
                ++  T+  G
Sbjct: 260 VAKGTILDGTQSPG 273


>gi|74311916|ref|YP_310335.1| protease 4 [Shigella sonnei Ss046]
 gi|73855393|gb|AAZ88100.1| protease IV, a signal peptide peptidase [Shigella sonnei Ss046]
          Length = 618

 Score =  135 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 99.7 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|26248024|ref|NP_754064.1| protease 4 [Escherichia coli CFT073]
 gi|91210983|ref|YP_540969.1| protease 4 [Escherichia coli UTI89]
 gi|110641888|ref|YP_669618.1| protease 4 [Escherichia coli 536]
 gi|215486982|ref|YP_002329413.1| protease 4 [Escherichia coli O127:H6 str. E2348/69]
 gi|218699668|ref|YP_002407297.1| protease 4 [Escherichia coli IAI39]
 gi|300938898|ref|ZP_07153600.1| signal peptide peptidase SppA [Escherichia coli MS 21-1]
 gi|300975717|ref|ZP_07173137.1| signal peptide peptidase SppA [Escherichia coli MS 200-1]
 gi|300994367|ref|ZP_07180872.1| signal peptide peptidase SppA [Escherichia coli MS 45-1]
 gi|301050891|ref|ZP_07197742.1| signal peptide peptidase SppA [Escherichia coli MS 185-1]
 gi|312966966|ref|ZP_07781184.1| signal peptide peptidase SppA, 67K type [Escherichia coli 2362-75]
 gi|331657804|ref|ZP_08358766.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA206]
 gi|26108427|gb|AAN80629.1|AE016761_204 Protease IV [Escherichia coli CFT073]
 gi|91072557|gb|ABE07438.1| protease IV, a signal peptide peptidase [Escherichia coli UTI89]
 gi|110343480|gb|ABG69717.1| protease IV [Escherichia coli 536]
 gi|215265054|emb|CAS09441.1| protease IV (signal peptide peptidase) [Escherichia coli O127:H6
           str. E2348/69]
 gi|218369654|emb|CAR17423.1| protease IV (signal peptide peptidase) [Escherichia coli IAI39]
 gi|294489545|gb|ADE88301.1| protease 4 [Escherichia coli IHE3034]
 gi|300297410|gb|EFJ53795.1| signal peptide peptidase SppA [Escherichia coli MS 185-1]
 gi|300308679|gb|EFJ63199.1| signal peptide peptidase SppA [Escherichia coli MS 200-1]
 gi|300406213|gb|EFJ89751.1| signal peptide peptidase SppA [Escherichia coli MS 45-1]
 gi|300456158|gb|EFK19651.1| signal peptide peptidase SppA [Escherichia coli MS 21-1]
 gi|307553787|gb|ADN46562.1| protease IV [Escherichia coli ABU 83972]
 gi|307626750|gb|ADN71054.1| protease 4 [Escherichia coli UM146]
 gi|312288430|gb|EFR16332.1| signal peptide peptidase SppA, 67K type [Escherichia coli 2362-75]
 gi|315290471|gb|EFU49846.1| signal peptide peptidase SppA [Escherichia coli MS 153-1]
 gi|315299847|gb|EFU59087.1| signal peptide peptidase SppA [Escherichia coli MS 16-3]
 gi|324007104|gb|EGB76323.1| signal peptide peptidase SppA [Escherichia coli MS 57-2]
 gi|324011509|gb|EGB80728.1| signal peptide peptidase SppA [Escherichia coli MS 60-1]
 gi|331056052|gb|EGI28061.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA206]
          Length = 618

 Score =  135 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 98.9 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 306


>gi|331647259|ref|ZP_08348353.1| signal peptide peptidase SppA, 67K type [Escherichia coli M605]
 gi|331044042|gb|EGI16178.1| signal peptide peptidase SppA, 67K type [Escherichia coli M605]
          Length = 622

 Score =  135 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+  QMMQ  +++ Y  F+ LV+++R+
Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEVQQMMQLSIENGYKRFITLVADARH 501

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 560

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589



 Score = 98.5 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 101/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 23  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 83  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 143 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 262

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E  ++L          K
Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEFEKTLTKEFGWSKTDK 310


>gi|323978052|gb|EGB73138.1| signal peptide peptidase SppA [Escherichia coli TW10509]
          Length = 622

 Score =  135 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 125/271 (46%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITKALPPEAQQMMQLSIENGYKRFITLVADARH 501

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L     +  ++ +     +
Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KLWHLEYYVDEPTF 560

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589



 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 23  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 83  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  + E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 143 KEFRDSGKPVYAIGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 262

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 310


>gi|191171758|ref|ZP_03033305.1| protease 4 [Escherichia coli F11]
 gi|227885806|ref|ZP_04003611.1| S49 family peptidase IV [Escherichia coli 83972]
 gi|190908088|gb|EDV67680.1| protease 4 [Escherichia coli F11]
 gi|227837379|gb|EEJ47845.1| S49 family peptidase IV [Escherichia coli 83972]
          Length = 622

 Score =  135 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 501

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 560

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589



 Score = 98.9 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 23  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 83  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 143 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 262

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 310


>gi|323186946|gb|EFZ72264.1| signal peptide peptidase SppA, 67K type [Escherichia coli RN587/1]
          Length = 618

 Score =  135 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKEDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLAKEFGWSKTDK 306


>gi|320194522|gb|EFW69153.1| Protease IV [Escherichia coli WV_060327]
          Length = 618

 Score =  135 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 97.0 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 101/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++  A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSSAAREADSRWIGELWKNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 306


>gi|126174276|ref|YP_001050425.1| signal peptide peptidase SppA, 67K type [Shewanella baltica OS155]
 gi|125997481|gb|ABN61556.1| signal peptide peptidase SppA, 67K type [Shewanella baltica OS155]
          Length = 615

 Score =  135 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 14/268 (5%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                V  I   G I            +   E + +   D    AL++ + SPGGSA+A 
Sbjct: 322 VEQDSVGIIVASGTILNGTQPAGQIGGESTAELLRKARFDKHVKALVLRVDSPGGSAFAS 381

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + +  +K   KPV+  +  +AAS GY IS +++ I A  T+L GSIG+       +
Sbjct: 382 EQIRQELLALKAAGKPVVVSMGSLAASGGYWISASADYIFATPTTLTGSIGIFGMITTFE 441

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L  +GV    V +S         + ++P+   ++Q  ++  Y  F+ LV++ R +  +
Sbjct: 442 DSLASIGVHTDGVSTSEWAGLSVTRT-LSPQVEAIIQRHIERGYLDFISLVAKERKMTIE 500

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFC 261
           +   ++ GR+W+G +A ++GL+D +G  +E       L        ++ +        F 
Sbjct: 501 QVDKIAQGRVWSGKKALELGLVDELGDLDEAIAKAAKLADMTLFDTRVIEQELTPEQRFM 560

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                S+SS L  ++   + + ++ + A
Sbjct: 561 QQMFASVSSYLPASLS--QSSMLEQMLA 586



 Score = 85.4 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 89/273 (32%), Gaps = 36/273 (13%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51
           +K+    +   ++   ++    S  ++        + + G I D +              
Sbjct: 23  RKLILNLIFFGILAAIIISIGSSEDIQVEDNSALVLNLAGSIVDQKQQVDPLEAAFKQGQ 82

Query: 52  -----------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRKPV 99
                      +++  I+  ++D   + L++             ++I  A+ + K     
Sbjct: 83  NANADGEILLADVLYVIDNAAQDQRISTLVLDLADLKHAGISKLQSIGDALNRFKESGKK 142

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
           +  +        Y ++  ++ I       V   G+     Y K  LDKL +     +   
Sbjct: 143 VVAIGNYYEQNQYFLASFADTIYLNPQGGVSLDGLSMYNQYFKSALDKLKIKAHIFRVGT 202

Query: 160 MKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSD 209
            K+   P+   +++  A +    ++   +  + + V+ +RNI  +            L  
Sbjct: 203 FKSAVEPYMRDDMSDAAREASSALLADVWQSYTQTVAGNRNIEPNSLVPDATTYLAELDK 262

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
               + A A  +  +D +   E+  Q++     
Sbjct: 263 ANGDSAAMAINMKWVDSLATTEDFRQTMLETVG 295


>gi|193068967|ref|ZP_03049926.1| protease 4 [Escherichia coli E110019]
 gi|192957762|gb|EDV88206.1| protease 4 [Escherichia coli E110019]
          Length = 622

 Score =  135 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 501

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 560

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589



 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 23  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 83  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 143 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 262

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 310


>gi|184159172|ref|YP_001847511.1| periplasmic serine protease [Acinetobacter baumannii ACICU]
 gi|332851109|ref|ZP_08433218.1| signal peptide peptidase SppA [Acinetobacter baumannii 6013150]
 gi|332869618|ref|ZP_08438829.1| signal peptide peptidase SppA [Acinetobacter baumannii 6013113]
 gi|332875999|ref|ZP_08443785.1| signal peptide peptidase SppA [Acinetobacter baumannii 6014059]
 gi|183210766|gb|ACC58164.1| Periplasmic serine protease (ClpP class) [Acinetobacter baumannii
           ACICU]
 gi|322509086|gb|ADX04540.1| Putative protease [Acinetobacter baumannii 1656-2]
 gi|332730273|gb|EGJ61598.1| signal peptide peptidase SppA [Acinetobacter baumannii 6013150]
 gi|332732665|gb|EGJ63897.1| signal peptide peptidase SppA [Acinetobacter baumannii 6013113]
 gi|332735865|gb|EGJ66906.1| signal peptide peptidase SppA [Acinetobacter baumannii 6014059]
          Length = 365

 Score =  135 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 132/297 (44%), Gaps = 18/297 (6%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQI-------EDSQELI 54
             K +   Y++  +V +     +    S    +S H+A + I G I        +S++  
Sbjct: 72  FFKTLTFIYLLFIIVLMGKGCSTTKDGSTASSSSAHLAVVDIIGTIDASSNQAVNSEDTN 131

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAG 111
           + ++R     ++ A+ ++++SPGGS    + I++ I+ +      K V   + +M AS  
Sbjct: 132 KALKRAFEASNSKAIALNINSPGGSPVQSDEIWQEIRYLKKEHPDKKVYAVIGDMGASGA 191

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I+   +SLVGSIGV+     +     KLG+  +++ +   K   S    +N
Sbjct: 192 YYIASAADEIIVNPSSLVGSIGVIMPNYGITGLAQKLGIEDRTLTAGTNKDILSMTKPIN 251

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQ 230
           P   Q +Q V+D+ +  F+  V E R          +  G  WTG +A ++G+ D  G  
Sbjct: 252 PVQRQHIQSVLDNVHTHFINAVKEGRGKRLKTNDPAIFSGLFWTGEQAIQLGVADRSGNI 311

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYW--FCDLKNLSISSLLEDTIPLMKQTKVQ 285
             + + L    +D  +    + NP ++            +S  + + +   +  K+Q
Sbjct: 312 TSLMRELK---LDNKVDYTIERNPLQSILGRMGSEMGKGLSESVAERLQTSQDAKLQ 365


>gi|256018039|ref|ZP_05431904.1| protease 4 [Shigella sp. D9]
 gi|332279079|ref|ZP_08391492.1| protease IV (signal peptide peptidase) [Shigella sp. D9]
 gi|332101431|gb|EGJ04777.1| protease IV (signal peptide peptidase) [Shigella sp. D9]
          Length = 618

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KP +  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPAVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 99.7 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVNLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|253565829|ref|ZP_04843283.1| protease IV [Bacteroides sp. 3_2_5]
 gi|251944933|gb|EES85371.1| protease IV [Bacteroides sp. 3_2_5]
 gi|301164217|emb|CBW23775.1| putative protease IV [Bacteroides fragilis 638R]
          Length = 592

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 79/280 (28%), Positives = 139/280 (49%), Gaps = 19/280 (6%)

Query: 2   EFVLKKIKTRYVM-----LSLVTLTVVYFSWSSHVEDNSPHV-ARIAIRGQIED------ 49
             V   +KT   +     L ++ L  +     +  +D S ++ A     G+I D      
Sbjct: 267 NDVRDYLKTLVKIDEDDRLPILGLEEMVNIKKNVPKDKSGNILAVYYASGEITDYAGSAA 326

Query: 50  ------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103
                   ++I  + ++  DD   A+++ ++SPGGSA+A E I+ A++++K +KPVI  +
Sbjct: 327 SDEGIIGSKMIRDLRKLKEDDDVKAVVLRVNSPGGSAFASEQIWHAVKELKAKKPVIVSM 386

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
            + AAS GY ISCA++ I+A  T+L GSIG+    P VK   +K+G++   VK++     
Sbjct: 387 GDYAASGGYYISCAADSIIAEPTTLTGSIGIFGMIPNVKGLTEKIGLTYDVVKTNQFSDF 446

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
            +    VN     ++Q ++   Y  FV   +E R++  DK   +++GR+WTG  AKK+GL
Sbjct: 447 GNLMRPVNSDERALLQMMIGQGYDLFVSRCAEGRHMSKDKIEKIAEGRVWTGEMAKKIGL 506

Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
           +D +GG  +  +        +    I  +   K+      
Sbjct: 507 VDELGGIGKALEIAAQKADLKG-YTIISYPAKKDILSTLF 545



 Score = 93.9 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 98/264 (37%), Gaps = 26/264 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49
             ++ +VTL  +  S  +        V  + ++G +                        
Sbjct: 22  LFIIGVVTLVGIISSSDTETVVKKNSVMMLDLKGTLVERTQESLEGLLGKFTGETADTYG 81

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
             +++  I++   +D+   + +  S    S  + +AI +A+   K     I    +    
Sbjct: 82  LDDILASIKKAKENDNIKGIYIQASWLNASYASLQAIRKALDDFKESGKFIVAYSDNYTQ 141

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y +S  ++ ++     ++   G+     + K  L KLG+ ++  K    K+   PF  
Sbjct: 142 GLYYLSSVADKVMLNPKGMIEWRGLASAPIFYKDLLQKLGIEMQVFKVGTYKSAVEPFTA 201

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225
           +E++P   + +   + S ++  +  VS SR I  D   + +D     +   E+ K  L D
Sbjct: 202 TEMSPANREQVTAFIGSIWNQILDGVSASRKIGKDSLNMYADRMLMFYPSDESVKCRLAD 261

Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249
            +  Q +V   L  L       ++
Sbjct: 262 TLIYQNDVRDYLKTLVKIDEDDRL 285


>gi|320181201|gb|EFW56120.1| Protease IV [Shigella boydii ATCC 9905]
          Length = 618

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 98.9 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKADRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|291282945|ref|YP_003499763.1| Protease 4 [Escherichia coli O55:H7 str. CB9615]
 gi|209768384|gb|ACI82504.1| protease IV [Escherichia coli]
 gi|290762818|gb|ADD56779.1| Protease 4 [Escherichia coli O55:H7 str. CB9615]
 gi|320658432|gb|EFX26126.1| protease 4 [Escherichia coli O55:H7 str. USDA 5905]
          Length = 618

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  + + Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIKNGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|187733275|ref|YP_001880563.1| protease 4 [Shigella boydii CDC 3083-94]
 gi|194428542|ref|ZP_03061081.1| protease 4 [Escherichia coli B171]
 gi|194433484|ref|ZP_03065762.1| protease 4 [Shigella dysenteriae 1012]
 gi|260844115|ref|YP_003221893.1| protease IV [Escherichia coli O103:H2 str. 12009]
 gi|260855631|ref|YP_003229522.1| protease IV [Escherichia coli O26:H11 str. 11368]
 gi|260868291|ref|YP_003234693.1| protease IV [Escherichia coli O111:H- str. 11128]
 gi|307310662|ref|ZP_07590308.1| signal peptide peptidase SppA, 67K type [Escherichia coli W]
 gi|187430267|gb|ACD09541.1| protease 4 [Shigella boydii CDC 3083-94]
 gi|194413420|gb|EDX29703.1| protease 4 [Escherichia coli B171]
 gi|194418247|gb|EDX34338.1| protease 4 [Shigella dysenteriae 1012]
 gi|209768378|gb|ACI82501.1| protease IV [Escherichia coli]
 gi|257754280|dbj|BAI25782.1| protease IV [Escherichia coli O26:H11 str. 11368]
 gi|257759262|dbj|BAI30759.1| protease IV [Escherichia coli O103:H2 str. 12009]
 gi|257764647|dbj|BAI36142.1| protease IV [Escherichia coli O111:H- str. 11128]
 gi|306908840|gb|EFN39336.1| signal peptide peptidase SppA, 67K type [Escherichia coli W]
 gi|315061069|gb|ADT75396.1| protease IV (signal peptide peptidase) [Escherichia coli W]
 gi|320176722|gb|EFW51758.1| Protease IV [Shigella dysenteriae CDC 74-1112]
 gi|320641615|gb|EFX11003.1| protease 4 [Escherichia coli O157:H7 str. G5101]
 gi|320646975|gb|EFX15808.1| protease 4 [Escherichia coli O157:H- str. 493-89]
 gi|320652257|gb|EFX20555.1| protease 4 [Escherichia coli O157:H- str. H 2687]
 gi|320657858|gb|EFX25620.1| protease 4 [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320668330|gb|EFX35157.1| protease 4 [Escherichia coli O157:H7 str. LSU-61]
 gi|323152988|gb|EFZ39257.1| signal peptide peptidase SppA, 67K type [Escherichia coli EPECa14]
 gi|323158527|gb|EFZ44542.1| signal peptide peptidase SppA, 67K type [Escherichia coli E128010]
 gi|323166270|gb|EFZ52045.1| signal peptide peptidase SppA, 67K type [Shigella sonnei 53G]
 gi|323175160|gb|EFZ60774.1| signal peptide peptidase SppA, 67K type [Escherichia coli LT-68]
 gi|323180545|gb|EFZ66090.1| signal peptide peptidase SppA, 67K type [Escherichia coli 1180]
 gi|323948173|gb|EGB44162.1| signal peptide peptidase SppA [Escherichia coli H120]
 gi|324119252|gb|EGC13140.1| signal peptide peptidase SppA [Escherichia coli E1167]
 gi|332085809|gb|EGI90973.1| signal peptide peptidase SppA, 67K type [Shigella dysenteriae
           155-74]
          Length = 618

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|333006817|gb|EGK26314.1| signal peptide peptidase SppA, 67K type [Shigella flexneri K-272]
          Length = 614

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 315 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 374

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   K V+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 375 VTASEVIRAELAAARAAGKSVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 434

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 435 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 493

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 494 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 552

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 553 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 581



 Score =  100 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 15  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 74

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 75  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 134

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 135 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLNV 194

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 195 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 254

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 255 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 302


>gi|320184010|gb|EFW58833.1| Protease IV [Shigella flexneri CDC 796-83]
 gi|332096360|gb|EGJ01361.1| signal peptide peptidase SppA, 67K type [Shigella boydii 3594-74]
          Length = 618

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 99.3 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDHNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPSA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|300904625|ref|ZP_07122461.1| signal peptide peptidase SppA [Escherichia coli MS 84-1]
 gi|301303940|ref|ZP_07210058.1| signal peptide peptidase SppA [Escherichia coli MS 124-1]
 gi|300403456|gb|EFJ86994.1| signal peptide peptidase SppA [Escherichia coli MS 84-1]
 gi|300840737|gb|EFK68497.1| signal peptide peptidase SppA [Escherichia coli MS 124-1]
 gi|315257426|gb|EFU37394.1| signal peptide peptidase SppA [Escherichia coli MS 85-1]
          Length = 666

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 367 KTPADTGDSIGVVFANGAIMDGEEAQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 426

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 427 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 486

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 487 TTVENSLDSIGVHTDGVSTSPLADV-SITKALPPEAQQMMQLSIENGYKRFITLVADARH 545

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 546 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 604

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 605 FDKVMDNMSGS--VRAMLPDTFQAMLPAPLA 633



 Score = 99.3 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 101/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S S   E        + I G I D         
Sbjct: 67  LNFVREMVLNLFFIFLVLVGVGIWMQVSSSDTKETAGRGALLLDISGVIVDKPDSSQRFS 126

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L    G      + I +A+
Sbjct: 127 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKDFAGGDQPSMQYIGKAL 186

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 187 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 246

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 247 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 306

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 307 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 354


>gi|188493917|ref|ZP_03001187.1| signal peptide peptidase SppA, 67K type [Escherichia coli 53638]
 gi|188489116|gb|EDU64219.1| signal peptide peptidase SppA, 67K type [Escherichia coli 53638]
          Length = 618

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDNGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP ++     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|332343487|gb|AEE56821.1| signal peptide peptidase SppA [Escherichia coli UMNK88]
          Length = 618

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I      +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLFPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP ++     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 PGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|331683273|ref|ZP_08383874.1| signal peptide peptidase SppA, 67K type [Escherichia coli H299]
 gi|331079488|gb|EGI50685.1| signal peptide peptidase SppA, 67K type [Escherichia coli H299]
          Length = 618

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLAD-ISITKALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 98.9 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 306


>gi|145637565|ref|ZP_01793222.1| protease IV [Haemophilus influenzae PittHH]
 gi|145269251|gb|EDK09197.1| protease IV [Haemophilus influenzae PittHH]
          Length = 615

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 126/256 (49%), Gaps = 14/256 (5%)

Query: 36  PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             +A + + G I D +          +   + +   D+S  A+I+ ++SPGGSA+A E I
Sbjct: 322 NKIAVVNVEGTIIDGESDEENSGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEII 381

Query: 87  FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
            +  + ++   KPVI  +  MAAS GY IS  ++ I+A   ++ GSIG+   +P  +  +
Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFAMFPTFENSI 441

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV    V ++ +    S FS +      + Q  ++  Y  F+ +VS+ R +   +  
Sbjct: 442 KKIGVHADGVSTTELANT-SAFSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVD 500

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L+ G++W G++A + GL+D +G   E       L   +    ++D++     WF D   
Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 557

Query: 266 LSISSLLEDTIPLMKQ 281
             IS+LL DT    ++
Sbjct: 558 SLISTLLRDTKKGAQE 573



 Score = 88.9 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 109/288 (37%), Gaps = 44/288 (15%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52
            ++ +    V L  V L V   S+SS  + +          + + G + D+++       
Sbjct: 14  FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTTLTGDGALLLNLDGYLADNRDETLRWQD 73

Query: 53  ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93
                             ++  I++   D     L++ L+   G    A + I  AI   
Sbjct: 74  ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHF 133

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K+    +    +  +   Y ++  ++ I       V   G+  +  Y K  LDKL V+  
Sbjct: 134 KDAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF  ++++ +A   MQ  +   ++ +V  VSE+RNI  D    L + +
Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDNI--LPNAK 251

Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
            +              A++ GL+  V  + ++ + L AL    S  K+
Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKKLAALFGKGSDGKV 299


>gi|296122406|ref|YP_003630184.1| signal peptide peptidase SppA, 36K type [Planctomyces limnophilus
           DSM 3776]
 gi|296014746|gb|ADG67985.1| signal peptide peptidase SppA, 36K type [Planctomyces limnophilus
           DSM 3776]
          Length = 338

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/275 (21%), Positives = 129/275 (46%), Gaps = 10/275 (3%)

Query: 27  WSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           + S     +  +A + + G I    ++ +I +IE  + D+    +++++ SPGG      
Sbjct: 58  FLSGNSSTTQRIAVLRVSGTIMPPLTERIIRQIEVAAEDERVKGVLLTIDSPGGFVADSH 117

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCA---SNIIVAAETSLVGSIGVLFQYPYV 141
            I+ A++K++ +KP+  ++  +AAS GY I+        I A  T+  GSIGV+     +
Sbjct: 118 QIYHALEKLRAKKPISIQMKRLAASGGYYIAMGAGTKGQIFAEPTTWTGSIGVIIPRYDM 177

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI-P 200
              ++K+GVS   +K+   K   SPF  +     ++ +++++ S+  F+ L+  +R+   
Sbjct: 178 SELVEKIGVSSDPLKTGEFKDALSPFHPLTEAERKVWEEILNQSFEQFIELIDTNRDTLD 237

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
            ++   L+ G+I+T  +A+  G+ID +G +E+   +L        +R ++  + P+    
Sbjct: 238 REQARKLATGQIYTARDARANGMIDEIGFEEDALAALQKSLKLDQVRVVEYRSQPQ--LV 295

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAV--WNP 293
             L      ++       +          +  W P
Sbjct: 296 DLLLGSRTENVTAAQWQALVDATTPRAMFLFSWLP 330


>gi|218554334|ref|YP_002387247.1| protease 4 [Escherichia coli IAI1]
 gi|218361102|emb|CAQ98685.1| protease IV (signal peptide peptidase) [Escherichia coli IAI1]
          Length = 618

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score =  100 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 103/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S S   E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGSDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|157161228|ref|YP_001458546.1| protease 4 [Escherichia coli HS]
 gi|170019887|ref|YP_001724841.1| protease 4 [Escherichia coli ATCC 8739]
 gi|312969795|ref|ZP_07783978.1| signal peptide peptidase SppA, 67K type [Escherichia coli 1827-70]
 gi|157066908|gb|ABV06163.1| protease 4 [Escherichia coli HS]
 gi|169754815|gb|ACA77514.1| signal peptide peptidase SppA, 67K type [Escherichia coli ATCC
           8739]
 gi|310338080|gb|EFQ03169.1| signal peptide peptidase SppA, 67K type [Escherichia coli 1827-70]
          Length = 618

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP ++     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|281178836|dbj|BAI55166.1| protease IV [Escherichia coli SE15]
          Length = 618

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+  QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEVQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 98.9 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 306


>gi|209919128|ref|YP_002293212.1| protease 4 [Escherichia coli SE11]
 gi|218695325|ref|YP_002402992.1| protease 4 [Escherichia coli 55989]
 gi|209912387|dbj|BAG77461.1| protease IV [Escherichia coli SE11]
 gi|218352057|emb|CAU97794.1| protease IV (signal peptide peptidase) [Escherichia coli 55989]
          Length = 618

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 98.1 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +    +
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRLIPAQQVFPGA 258

Query: 209 DGRIW--------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            G +         T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLVGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|193065780|ref|ZP_03046843.1| protease 4 [Escherichia coli E22]
 gi|192926552|gb|EDV81183.1| protease 4 [Escherichia coli E22]
 gi|320197951|gb|EFW72559.1| Protease IV [Escherichia coli EC4100B]
          Length = 622

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 501

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 560

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589



 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 23  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 83  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 143 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 262

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 310


>gi|170683467|ref|YP_001743483.1| protease 4 [Escherichia coli SMS-3-5]
 gi|170521185|gb|ACB19363.1| protease 4 [Escherichia coli SMS-3-5]
          Length = 622

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 501

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 560

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589



 Score = 99.7 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 23  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 83  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 143 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 262

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 310


>gi|330911571|gb|EGH40081.1| protease 4 [Escherichia coli AA86]
          Length = 622

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+  QMMQ  +++ Y  F+ LV+++R+
Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEVQQMMQLSIENGYKRFITLVADARH 501

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 560

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589



 Score = 98.9 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 23  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 83  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 143 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 262

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 310


>gi|222033518|emb|CAP76259.1| Protease 4 [Escherichia coli LF82]
 gi|312946365|gb|ADR27192.1| protease 4 [Escherichia coli O83:H1 str. NRG 857C]
          Length = 618

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--IRAMLPDAFQAMLPAPLA 585



 Score = 98.9 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 306


>gi|283833434|ref|ZP_06353175.1| signal peptide peptidase SppA [Citrobacter youngae ATCC 29220]
 gi|291071088|gb|EFE09197.1| signal peptide peptidase SppA [Citrobacter youngae ATCC 29220]
          Length = 618

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 121/271 (44%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  I   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGESIGVIFANGAIMDGEETPGNVGGDTTAAQIREARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   K   KPV+  +  MAAS GY IS  ++ IVA  ++L GSIG+    
Sbjct: 379 VSASEVIRAELAAAKAAGKPVVVSMGGMAASGGYWISTPASYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+  QMMQ  +++ Y  F+ LV+++R 
Sbjct: 439 NTVENSLDSIGVHTDGVATSPLAD-ISITKALPPEVQQMMQLSIENGYKRFITLVADARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        I+ +      
Sbjct: 498 TTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHIEYY--QDEP 554

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
            F D+   S+S  +   +P   Q  +    A
Sbjct: 555 TFMDMVIDSMSGSVRAMLPEAIQAMLPPPLA 585



 Score = 99.3 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S S+  E        + I G I D         
Sbjct: 19  LNFVREFVLNLFFIFLVLVGVGIWMQVSSSNTSEHAERGALLLDISGVIVDKPSSTSRLS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G+     + I +A+
Sbjct: 79  VIGRQLFGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGADQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V +  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVFAVGDNFSQGQYYLASFANKIYLSPQGSVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLDTVAANRQIPAQQVFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
             + DG       T   A    L+D +    EV + L          K
Sbjct: 259 QAMLDGLTKVDGDTAKYALDNKLVDALASSAEVEKILTKQFGWSKADK 306


>gi|323526878|ref|YP_004229031.1| peptidase S49 [Burkholderia sp. CCGE1001]
 gi|323383880|gb|ADX55971.1| peptidase S49 [Burkholderia sp. CCGE1001]
          Length = 321

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 14/268 (5%)

Query: 26  SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSA 80
                +  +  H A IA+ G+I      +++++   +E    D     +I+  +SPGGS 
Sbjct: 58  FSGDKIAASGRHTALIALDGEISADTRANAEDISAALESAFEDAGTAGVILRCNSPGGSP 117

Query: 81  YAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
                I+  +++++ + P I     V +M AS GY  + A + I   + S+VGSIGVL  
Sbjct: 118 VQAGIIYEEMRRLRAKHPSIPLYVVVGDMCASGGYYAAAAGDKIYVDKASIVGSIGVLMD 177

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
                  +DKLG+  +   S   K    PFS   PK  Q  Q+++D  +  F+  V + R
Sbjct: 178 SFGFTGLMDKLGIQRRLHTSGENKGFYDPFSPETPKMDQHAQEMLDQIHGQFIDAVRQGR 237

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
                +T  +  G  WTG ++ ++GL D  G    V + +           I D+   ++
Sbjct: 238 GKRLHETADMFSGLFWTGQKSVELGLADGFGDANYVAREIIK------APDIVDYTVKES 291

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
                 +    +        L    ++ 
Sbjct: 292 ITDRVARKFGAAVGGGAVRALAFGARLN 319


>gi|323186216|gb|EFZ71568.1| signal peptide peptidase SppA, 67K type [Escherichia coli 1357]
          Length = 618

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGKVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP ++     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|331668455|ref|ZP_08369303.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA271]
 gi|331063649|gb|EGI35560.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA271]
          Length = 622

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 501

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 560

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589



 Score = 98.1 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 23  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 83  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 143 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +    +
Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRLIPAQQVFPGA 262

Query: 209 DGRIW--------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            G +         T   A +  L+D +    E+ ++L          K
Sbjct: 263 QGLLVGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 310


>gi|327252883|gb|EGE64537.1| signal peptide peptidase SppA, 67K type [Escherichia coli STEC_7v]
          Length = 618

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVV 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITKALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 99.7 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  + E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAIGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|193078090|gb|ABO13025.2| putative protease; putative signal peptide peptidase sppA
           [Acinetobacter baumannii ATCC 17978]
          Length = 365

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 127/295 (43%), Gaps = 14/295 (4%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQI-------EDSQELI 54
             K +   Y++  +V +     +    S    +S H+A + I G I        +S++  
Sbjct: 72  FFKTLTFIYLLFIIVLMGKGCSTTKDGSTASSSSAHLAVVDIIGTIDASSNQAVNSEDTN 131

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAG 111
           + ++R     ++ A+ ++++SPGGS    + I++ I+ +      K V   + +M AS  
Sbjct: 132 KALKRAFEASNSKAIALNINSPGGSPVQSDEIWQEIRYLKKEHPDKKVYAVIGDMGASGA 191

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I+   +SLVGSIGV+     +     KLG+  +++ +   K   S    +N
Sbjct: 192 YYIASAADEIIVNPSSLVGSIGVIMPNYGITGLAQKLGIEDRTLTAGTNKDILSMTKPIN 251

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
           P   Q +Q V+D+ +  F+  V E R          +  G  WTG +A ++G+ D  G  
Sbjct: 252 PVQRQHIQSVLDNVHTHFINAVKEGRGKRLKSNDPAIFSGLFWTGEQAIQLGVADRSGNI 311

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
             + + L  L         ++                +S  + + +   +  K+Q
Sbjct: 312 TSLMREL-KLDNKVDYTIERNPLQSILGRMGSEMGKGLSESVAERLQTSQDAKLQ 365


>gi|16273441|ref|NP_439690.1| protease IV [Haemophilus influenzae Rd KW20]
 gi|260580322|ref|ZP_05848151.1| signal peptide peptidase SppA, 67K type [Haemophilus influenzae
           RdAW]
 gi|1174428|sp|P45243|SPPA_HAEIN RecName: Full=Protease 4; AltName: Full=Endopeptidase IV; AltName:
           Full=Protease IV; AltName: Full=Signal peptide peptidase
 gi|1574383|gb|AAC23191.1| protease IV (sppA) [Haemophilus influenzae Rd KW20]
 gi|260092999|gb|EEW76933.1| signal peptide peptidase SppA, 67K type [Haemophilus influenzae
           RdAW]
          Length = 615

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 69/256 (26%), Positives = 126/256 (49%), Gaps = 14/256 (5%)

Query: 36  PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             +A + + G I D +          +   + +   D+S  A+I+ ++SPGGSA+A E I
Sbjct: 322 NKIAVVNVEGTIIDGESDEENAGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEII 381

Query: 87  FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
            +  + ++   KPVI  +  MAAS GY IS  ++ I+A   ++ GSIG+   +P  +  +
Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADSNTITGSIGIFTMFPTFENSI 441

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV    V ++ +    + FS +      + Q  ++  Y  F+ +VS+ R +   +  
Sbjct: 442 KKIGVHADGVSTTELANTSA-FSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVD 500

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L+ G++W G++A + GL+D +G   E       L   +    ++D++     WF D   
Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 557

Query: 266 LSISSLLEDTIPLMKQ 281
             IS+LL DT    ++
Sbjct: 558 SLISTLLSDTKKGAQE 573



 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 110/287 (38%), Gaps = 44/287 (15%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52
            ++ +    V L  V L V   S+SS  + +    S     + + G + D+++       
Sbjct: 14  FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTALTSEGALLLNLDGYLADNRDETLRWQD 73

Query: 53  ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93
                             ++  I++   D     L++ L+   G    A + I  AI   
Sbjct: 74  ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHF 133

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K+    +    +  +   Y ++  ++ I       V   G+  +  Y K  LDKL V+  
Sbjct: 134 KDAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF  ++++ +A   MQ  +   ++ +V  VSE+RNI  D+   L + +
Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDRI--LPNAK 251

Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            +              A++ GL+  V  + ++ + L AL    S  K
Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKKLSALFGKGSDGK 298


>gi|325269104|ref|ZP_08135724.1| signal peptide peptidase SppA [Prevotella multiformis DSM 16608]
 gi|324988491|gb|EGC20454.1| signal peptide peptidase SppA [Prevotella multiformis DSM 16608]
          Length = 592

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 67/276 (24%), Positives = 123/276 (44%), Gaps = 16/276 (5%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------------SQELIERIERISRD 63
           VT+  +  +    ++D    +A     G I D              +Q++ + +E ++ D
Sbjct: 286 VTVADLQNAEDETLDDGDSQIAVYYAYGDIVDGAVGGMFAQNHKIDAQKVCKDLEELAED 345

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
               A+++ ++S GGSAYA E I+  I ++K +KPV+  +  MAAS  Y +S  ++ IVA
Sbjct: 346 KEIKAVVLRVNSGGGSAYASEQIWHQIMELKKKKPVVVSMGGMAASGAYYMSAPADWIVA 405

Query: 124 AETSLVGSIGVLFQYPYVKP-FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
             T+L GSIG+   +P     F +KLGV    VK++      +         +  +   V
Sbjct: 406 EPTTLTGSIGIFGMFPDASSLFAEKLGVRFDEVKTNKYAGFGTQARPFTEDEMAYLTQYV 465

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           +  Y  F   V+E R +   +   ++ G ++TG +A+K+GL+D +GG +        L  
Sbjct: 466 NRGYRLFRHRVAEGRKMTDSQVEKIAQGHVYTGQDAQKIGLVDQLGGLDTAIAKAVRLAK 525

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278
                    +     +    L+     + L + +  
Sbjct: 526 LTGYSTCV-YPEEPGFLEQLLEQTKPDNYLSEQLRA 560



 Score = 93.5 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 98/287 (34%), Gaps = 34/287 (11%)

Query: 1   MEFVLKKIKTRYV----------MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-- 48
           M+   K +   +V            +L+T+  +     S  +     V  + + GQ+   
Sbjct: 1   MKQFFKFVFASFVGTLLFGIVAGFFALITIAGMIAMQDSTEKIEDNSVLVLNLSGQLAER 60

Query: 49  -----------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                                L+E I +   +++   + +   +    +YA  +A+  A+
Sbjct: 61  GEDNFFGQLQGNATSSIGLDNLLEGIHKAKDNNNVKGIYIEAGAFAADSYASMQALRNAL 120

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
              K     I    +      Y ++ A++ +       +   G+  Q  +VK  L K+GV
Sbjct: 121 LDFKKSGKWIVAYGDTYTQGTYYLASAADKVYLNPQGQIDWHGLSSQPVFVKDLLAKVGV 180

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
            ++ VK    K+    F    ++    +     ++S +    + V  SR +   +    +
Sbjct: 181 KMQVVKVGAYKSATEMFTGDRMSAANREQTSAYLNSIWGNITKEVGASRRLSTAQLNAYA 240

Query: 209 DGRIWTG--AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           D  I         K+ L+D +   +++   +      +S   I+   
Sbjct: 241 DSMITFAAPETYVKLKLVDGLVYTDQMKGIVKKRLGLKSDDAIEQVT 287


>gi|331663248|ref|ZP_08364158.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA143]
 gi|331059047|gb|EGI31024.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA143]
          Length = 622

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLAD-ISITKALPPEAQQMMQLSIENGYKRFITLVADARH 501

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 560

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589



 Score = 98.5 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 23  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 83  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  + E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 143 KEFRDSGKPVYAIGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 262

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 310


>gi|197334260|ref|YP_002156464.1| signal peptide peptidase SppA, 67K type [Vibrio fischeri MJ11]
 gi|197315750|gb|ACH65197.1| signal peptide peptidase SppA, 67K type [Vibrio fischeri MJ11]
          Length = 618

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/282 (24%), Positives = 130/282 (46%), Gaps = 13/282 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           ++           V  ++  +A +   G I D                + +   DD   A
Sbjct: 309 ISYYDYLSQVQPTVIPDAQDIAVVVASGAIMDGTERQGTVGGDSTAALLRQARGDDKVKA 368

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   I  +K   KPV+  +  +AAS GY IS +++ I+A  T+
Sbjct: 369 VVLRVDSPGGSAFASEVIRNEIDALKEAGKPVVVSMSSVAASGGYWISASADKIIAQPTT 428

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           + GSIG+       +  L+K+G+    + +SP          +N    Q+MQ  ++  YH
Sbjct: 429 ITGSIGIFGILTTFEKGLEKMGIHSDGISTSPF-NGVGITRPLNDDVAQVMQLGIEHGYH 487

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F++LVS+ RN+  +    ++ GR+WTG +A K GL+D +G  ++  Q+   L   +  +
Sbjct: 488 RFIKLVSDHRNLSLEAVDKVAQGRVWTGKDALKHGLVDQLGDFDDAVQAAAQLANMESYN 547

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +  +K+   P   +  +L     +S+  +      +     +
Sbjct: 548 LYWVKEPLTPMEQFLEELSMNLNASVRTELFSFAPEALQPTI 589



 Score = 95.4 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 95/293 (32%), Gaps = 39/293 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIEDSQ------ 51
           + F  + +   + ++ +  +   +      S+  +   P    + + G I +        
Sbjct: 19  LSFTRQLVLNLFFLIFIGVIAFAFLDSTPPSTEDKIVEPKALILDLSGPIVEESKFREPL 78

Query: 52  -------------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQ 91
                              ++I+ I   + D++ + L++        S      I +AI 
Sbjct: 79  ERITSDVLGSQKSQENVLFDIIDTIRFAAHDNNVSGLVLHLKEMNETSLTKLRYIAKAIN 138

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
             K     +  + +    + Y ++  ++ +  A    V   G      Y K  L+KL VS
Sbjct: 139 TFKAAGKPVYAIGDYYNQSQYYLASYADKVFMAPDGTVLLRGYGAYTLYYKELLEKLNVS 198

Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------ 203
               +    K+   P+  ++++  A +     +   +  ++  V+ +R I          
Sbjct: 199 THVFRVGTYKSAVEPYLRNDMSDAAKESASVWLTQLWDAYLDDVATNRQIDPKTLTMPMD 258

Query: 204 --TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
                L            ++GL+D +  ++EV + L            K  + 
Sbjct: 259 QFIAKLKSVNGDLSQMTVELGLVDKLATRQEVRKDLIEQFGSNGYDSFKQISY 311


>gi|333018733|gb|EGK38026.1| signal peptide peptidase SppA, 67K type [Shigella flexneri K-227]
          Length = 618

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   K V+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKSVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 99.7 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLNV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|145634892|ref|ZP_01790599.1| protease IV [Haemophilus influenzae PittAA]
 gi|145267758|gb|EDK07755.1| protease IV [Haemophilus influenzae PittAA]
          Length = 615

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 127/256 (49%), Gaps = 14/256 (5%)

Query: 36  PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             +A + + G I D +          +   + +   D+S  A+I+ ++SPGGSA+A E I
Sbjct: 322 NKIAVVNVEGTIIDGESDEENAGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEII 381

Query: 87  FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
            +  + ++   KPVI  +  MAAS GY IS  ++ I+A   ++ GSIG+   +P  +  +
Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFAMFPTFENSI 441

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV+   V ++ +    S FS +      + Q  ++  Y  F+ +VS+ R +   +  
Sbjct: 442 KKIGVNADGVSTTELAKT-SAFSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVD 500

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L+ G++W G++A + GL+D +G   E       L   +    ++D++     WF D   
Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 557

Query: 266 LSISSLLEDTIPLMKQ 281
             IS+LL DT    ++
Sbjct: 558 SLISTLLRDTKKGAQE 573



 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 108/287 (37%), Gaps = 44/287 (15%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52
            ++ +    V L  V L V   S+SS  + +          + + G + D+++       
Sbjct: 14  FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTTLTGDGALLLNLDGYLADNRDETLRWQD 73

Query: 53  ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93
                             ++  I++   D     L++ L+   G    A + I  AI   
Sbjct: 74  ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHF 133

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K+    +    +  +   Y ++  ++ I       V   G+  +  Y K  LDKL V+  
Sbjct: 134 KDAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF  ++++ +A   MQ  +   ++ +V  VSE+RNI  D    L + +
Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDNI--LPNAK 251

Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            +              A++ GL+  V  + ++ + L AL    S  K
Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKKLTALFGKGSDGK 298


>gi|225012275|ref|ZP_03702712.1| signal peptide peptidase SppA, 67K type [Flavobacteria bacterium
           MS024-2A]
 gi|225003830|gb|EEG41803.1| signal peptide peptidase SppA, 67K type [Flavobacteria bacterium
           MS024-2A]
          Length = 588

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 63/263 (23%), Positives = 128/263 (48%), Gaps = 10/263 (3%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATA 68
           V++  V  + S+        +A +  RG I   +           +E ++ ++ D+   A
Sbjct: 287 VSVVDVNNASSTFDSSLKDRIAIVFARGPIMYGEGTKNMIAQGVFVETLKELAEDEWIKA 346

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           +++ + SPGG+A   + ++RAI+K+K +KPV+  +  +AAS GY I+  ++ I A   ++
Sbjct: 347 VVIRVESPGGNALTSDLLWRAIEKLKTKKPVLVSMGNVAASGGYYIAAGADQIFADPLTI 406

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIGV    P +    +K+G+  ++V++       S F  +           ++++Y+ 
Sbjct: 407 TGSIGVFASLPNIYGMTEKIGIHAETVETHQNALGYSFFQPLTESFKIRTIKSIENTYNT 466

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           F + V + R +  +    L+ GR+W+G +A  VGL+D +GG ++  ++   +   ++   
Sbjct: 467 FKQRVIKGRGLTSETVEALAQGRVWSGKQALSVGLVDHLGGLQDAIEAAAEVANIENYNT 526

Query: 249 IKDWNPPKNYWFCDLKNLSISSL 271
           I D+   +      L     S L
Sbjct: 527 I-DYPKFEEDLESILSGAIPSPL 548



 Score = 95.8 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 105/299 (35%), Gaps = 27/299 (9%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------- 51
           +    V+L +  +  +  + S         V  + +   I D                  
Sbjct: 20  LFFVIVLLFISGIASIMSAPSGGNSIKQNSVLALDLNLPIVDRAPSFDELQILLGLEDKV 79

Query: 52  ----ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
               ++I  I++ S + +   + +             +I  A+ + K     I    ++ 
Sbjct: 80  LGLPDIISAIDKASENQNIKGIRLRADFISAGWAQTRSIRNALSRFKESGKFIYAYADVF 139

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
              GY ++  S+ I      ++   G+  +  Y K F D+ GV ++ ++    K+   P+
Sbjct: 140 TQKGYYLASISDSIYLNPVGILEFKGLASEVLYYKDFQDEYGVKMEVIRHGKYKSAVEPY 199

Query: 168 --SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLI 224
             +E++      ++ ++D  +      +++ RN+       + +  RI    +  +  LI
Sbjct: 200 LENEMSSDNRYQIKTLLDDIWETIREEIAQERNLDPKILDKIINNQRITIPEDGVQEHLI 259

Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
           D +  +++  + +       +   +       +    +  + +  S L+D I ++    
Sbjct: 260 DALVYEDDFDEKIKMQLEISTDEDLN----RVSVVDVNNASSTFDSSLKDRIAIVFARG 314


>gi|59712250|ref|YP_205026.1| protease IV (signal peptide peptidase) [Vibrio fischeri ES114]
 gi|59480351|gb|AAW86138.1| protease IV (signal peptide peptidase) [Vibrio fischeri ES114]
          Length = 618

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/282 (25%), Positives = 131/282 (46%), Gaps = 13/282 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           ++           V  ++  +A +   G I D                + +   DD   A
Sbjct: 309 ISYYDYLSQVQPTVIPDAQDIAVVVASGAIMDGTERQGTVGGDSTAALLRQARGDDKVKA 368

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   I  +K   KPV+  +  +AAS GY IS +++ I+A  T+
Sbjct: 369 VVLRVDSPGGSAFASEVIRNEIDALKEAGKPVVVSMSSVAASGGYWISASADKIIAQPTT 428

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           + GSIG+       +  L+K+G+    + +SP     S    +N    Q+MQ  ++  YH
Sbjct: 429 ITGSIGIFGILTTFEKSLEKMGIHSDGISTSPF-NGVSITRPLNDDVAQVMQLGIEHGYH 487

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F++LVS+ RN+  +    ++ GR+WTG +A K GL+D +G  ++  Q+   L   +  +
Sbjct: 488 RFIKLVSDHRNLSLEAVDKVAQGRVWTGKDALKHGLVDQLGDFDDAVQAAAQLANMESYN 547

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +  +K+   P   +  +L     +S+  +      +     +
Sbjct: 548 LYWVKEPLTPMEQFLEELSMNLNASVRTELFSFAPEALQPTI 589



 Score = 95.4 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 95/293 (32%), Gaps = 39/293 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIEDSQ------ 51
           + F  + +   + ++ +  +   +      S+  +   P    + + G I +        
Sbjct: 19  LSFTRQLVLNLFFLIFIGVIAFAFLDSTPPSTEDKIVEPKALILDLSGPIVEESKFREPL 78

Query: 52  -------------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQ 91
                              ++++ I   + D++ + L++        S      I +AI 
Sbjct: 79  ERITSDVLGSQKSQENVLFDIVDTIRFAAHDNNVSGLVLHLKEMNETSLTKLRYIAKAIN 138

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
             K     +  + +    + Y ++  ++ +  A    V   G      Y K  L+KL VS
Sbjct: 139 TFKAAGKPVYAIGDYYNQSQYYLASYADKVFMAPDGTVLLRGYGAYTLYYKELLEKLNVS 198

Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------ 203
               +    K+   P+  ++++  A +     +   +  ++  V+ +R I          
Sbjct: 199 THVFRVGTYKSAVEPYLRNDMSDAAKESASAWLTQLWDAYLDDVATNRQIDPKTLTMPMD 258

Query: 204 --TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
                L            ++GL+D +  ++EV + L            K  + 
Sbjct: 259 QFIAKLKSVNGDLSQMMVELGLVDKLATRQEVRKDLIEQFGSNGYDSFKQISY 311


>gi|323968532|gb|EGB63938.1| signal peptide peptidase SppA [Escherichia coli M863]
          Length = 637

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVV 442

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITKALPPEAQQMMQLSIENGYKRFITLVADARH 501

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 560

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589



 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 23  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 83  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  + E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 143 KEFRDSGKPVYAIGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 262

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 310


>gi|229844213|ref|ZP_04464354.1| protease IV [Haemophilus influenzae 6P18H1]
 gi|229813207|gb|EEP48895.1| protease IV [Haemophilus influenzae 6P18H1]
          Length = 615

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 126/256 (49%), Gaps = 14/256 (5%)

Query: 36  PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             +A + + G I D +          +   + +   D+S  A+I+ ++SPGGSA+A E I
Sbjct: 322 NKIAVVNVEGTIIDGESDEENAGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEII 381

Query: 87  FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
            +  + ++   KPVI  +  MAAS GY IS  ++ I+A   ++ GSIG+   +P  +  +
Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADSNTITGSIGIFTMFPTFENSI 441

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV    V ++ +    S FS +      + Q  ++  Y  F+ +VS+ R +   +  
Sbjct: 442 KKIGVHADGVSTTELANT-SAFSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVD 500

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L+ G++W G++A + GL+D +G   E       L   +    ++D++     WF D   
Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 557

Query: 266 LSISSLLEDTIPLMKQ 281
             IS+LL DT    ++
Sbjct: 558 SLISTLLRDTKKGAQE 573



 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 108/287 (37%), Gaps = 44/287 (15%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52
            ++ +    V L  V L V   S+SS  + +    S     + + G + D+++       
Sbjct: 14  FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTALTSEGALLLNLDGYLADNRDETLRWQD 73

Query: 53  ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93
                             ++  I++   D     L++ L+   G      + I  AI   
Sbjct: 74  ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPTLDFIGGAISHF 133

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K+    +    +  +   Y ++  ++ I       V   G+  +  Y K  LDKL V+  
Sbjct: 134 KDAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF  ++++ +A   MQ  +   ++ +V  VSE+RNI  D    L + +
Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDNI--LPNAK 251

Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            +              A++ GL+  V  + ++ + L AL    S  K
Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKKLAALFGKGSDGK 298


>gi|30062971|ref|NP_837142.1| protease 4 [Shigella flexneri 2a str. 2457T]
 gi|56479902|ref|NP_707347.2| protease 4 [Shigella flexneri 2a str. 301]
 gi|110805427|ref|YP_688947.1| protease 4 [Shigella flexneri 5 str. 8401]
 gi|30041220|gb|AAP16949.1| protease IV, a signal peptide peptidase [Shigella flexneri 2a str.
           2457T]
 gi|56383453|gb|AAN43054.2| protease IV, a signal peptide peptidase [Shigella flexneri 2a str.
           301]
 gi|110614975|gb|ABF03642.1| protease IV, a signal peptide peptidase [Shigella flexneri 5 str.
           8401]
 gi|281600872|gb|ADA73856.1| putative Periplasmic serine proteases (ClpP class) [Shigella
           flexneri 2002017]
 gi|313649199|gb|EFS13633.1| signal peptide peptidase SppA, 67K type [Shigella flexneri 2a str.
           2457T]
 gi|332758842|gb|EGJ89157.1| signal peptide peptidase SppA, 67K type [Shigella flexneri 2747-71]
 gi|332759159|gb|EGJ89468.1| signal peptide peptidase SppA, 67K type [Shigella flexneri K-671]
 gi|332767154|gb|EGJ97349.1| signal peptide peptidase SppA, 67K type [Shigella flexneri 2930-71]
 gi|333003711|gb|EGK23247.1| signal peptide peptidase SppA, 67K type [Shigella flexneri VA-6]
 gi|333004305|gb|EGK23836.1| signal peptide peptidase SppA, 67K type [Shigella flexneri K-218]
 gi|333018322|gb|EGK37621.1| signal peptide peptidase SppA, 67K type [Shigella flexneri K-304]
          Length = 618

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   K V+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKSVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|309973214|gb|ADO96415.1| Protease IV [Haemophilus influenzae R2846]
          Length = 615

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/250 (28%), Positives = 126/250 (50%), Gaps = 14/250 (5%)

Query: 36  PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             +A + + G I D +          +   + +   D+S  A+++ ++SPGGSA+A E I
Sbjct: 322 NKIAVVNVEGAIIDGESDDENSGGDTIARILRKAHDDNSVKAVVLRVNSPGGSAFASEII 381

Query: 87  FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
            +  + ++   KPVI  +  MAAS GY IS  ++ I+A E ++ GSIG+   +P  +  +
Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADENTITGSIGIFAMFPTFENSI 441

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GVS   V ++ +    S FS +      + Q  ++  Y  F+ +VS+ R +   +  
Sbjct: 442 KKIGVSSDGVSTTELANT-SAFSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKKQVD 500

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L+ G++W G++A + GL+D +G   E       L   +    ++D++     WF D   
Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 557

Query: 266 LSISSLLEDT 275
             IS+LL DT
Sbjct: 558 SLISTLLRDT 567



 Score = 83.5 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 109/285 (38%), Gaps = 40/285 (14%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52
            ++ +    V L  V L V   S+SS  + +          + + G + D+++       
Sbjct: 14  FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTTLTGEGALLLNLDGYLADNRDETLRWQD 73

Query: 53  ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93
                             ++  I++   D     L++ L+   G    A + I  AI + 
Sbjct: 74  ALSELNGERVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISQF 133

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           KN    +    +  +   Y ++  ++ I       V   G+  +  Y K  LDKL V+  
Sbjct: 134 KNAGKPVIAYADNYSQGQYYLASFADEIYLNSIGKVDIHGLSQENLYFKEMLDKLAVTPH 193

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL------ 205
             +    K+   PF  ++++ +A   MQ  +   ++ +V  VSE+R I  D  L      
Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRKIKKDNVLPNAKQY 253

Query: 206 --VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
              L   +  + A A++ GL+  V  + ++ + L AL    S  K
Sbjct: 254 LSDLKALKGNSTAYAQQRGLVTDVVTRLDLDKKLTALFGKGSDGK 298


>gi|300930753|ref|ZP_07146126.1| signal peptide peptidase SppA [Escherichia coli MS 187-1]
 gi|300461386|gb|EFK24879.1| signal peptide peptidase SppA [Escherichia coli MS 187-1]
          Length = 666

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 367 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 426

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 427 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 486

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A  MMQ  +++ Y  F+ LV+++R+
Sbjct: 487 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQLMMQLNIENGYKRFITLVADARH 545

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 546 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 604

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 605 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 633



 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 67  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 126

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 127 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 186

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 187 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 246

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 247 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 306

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 307 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 354


>gi|325123108|gb|ADY82631.1| putative protease [Acinetobacter calcoaceticus PHEA-2]
          Length = 338

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 128/293 (43%), Gaps = 20/293 (6%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQI-------EDSQELI 54
             K +   Y++  +V +     +    S V  +S H+A + I G I        +S++  
Sbjct: 45  FFKTLTFIYLLFIIVLMGKGCSTSKEGSAVSSSSAHLAVVDIIGTIDASSNQAVNSEDTN 104

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAG 111
           + ++R     ++ A+ ++++SPGGS    + I++ I+ +      K V   + +M AS  
Sbjct: 105 KALKRAFEASNSKAVALNINSPGGSPVQSDEIWQEIRYLKKQHPDKKVYAVIGDMGASGA 164

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I+   +SLVGSIGV+     +     KLG+  +++ +   K   S    ++
Sbjct: 165 YYIASAADEIIVNPSSLVGSIGVIMPNYGITGLAQKLGIEDRTLTAGTNKDILSMTKPID 224

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
           P   Q +Q V+D+ +  F+  V E R          +  G  WTG +A ++G+ D  G  
Sbjct: 225 PAQKQHIQSVLDNVHTHFITAVKEGRGKRLKSNDPAIFSGLFWTGEQAIQLGVADRSGNI 284

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
             + + L        +    D+   +N     L  +        +  + ++ +
Sbjct: 285 TSLMREL-------KLDNKVDYTIERNPLQSILGRMGAEMGKGLSESIAQRLE 330


>gi|82543829|ref|YP_407776.1| protease 4 [Shigella boydii Sb227]
 gi|81245240|gb|ABB65948.1| protease IV [Shigella boydii Sb227]
          Length = 618

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDHNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQWQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPSA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|224499759|ref|ZP_03668108.1| hypothetical protein LmonF1_08734 [Listeria monocytogenes Finland
           1988]
          Length = 283

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 120/225 (53%), Gaps = 16/225 (7%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76
            E  +  +A +++ G I+D+ +               ++++E++  DD+   +++ ++SP
Sbjct: 56  EEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLEQVRNDDNIQGVLLYVNSP 115

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG       I   I +++  +  P    +  MAAS GY IS  ++ I A++ +L GS+GV
Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           + Q       + KLGVS  ++KS   K   S    +     ++MQ ++D SY+ FV++V+
Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
           + R +  ++   ++DGRI+ G +AK+ GLID  G QE+  ++L  
Sbjct: 236 QGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALEALKK 280


>gi|194335792|ref|YP_002017586.1| signal peptide peptidase SppA, 36K type [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308269|gb|ACF42969.1| signal peptide peptidase SppA, 36K type [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 597

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 113/271 (41%), Gaps = 11/271 (4%)

Query: 29  SHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGG 78
               ++   +A I + G I           D + L   ++    D +  AL+V + SPGG
Sbjct: 293 PQKGESDERIAVITMSGMIVHSAGEMGEGIDIEMLKNSLDAALEDKAVKALVVRIDSPGG 352

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            A A   + + +     +KP++  +  +AAS GY+ + A   I A   ++ GSIGV    
Sbjct: 353 DALASADMLQMLDSAAVKKPLVVSMSGVAASGGYMAALAGKTIFAQPLTITGSIGVYALK 412

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P +    +K+G+    V         +PF  +  +A           Y  FV  V+ SR 
Sbjct: 413 PNISGLAEKIGLGRDVVTRGQYADASTPFKPLEGQAYNKFVGASGEIYDDFVGKVAASRK 472

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI-KDWNPPKN 257
           +       ++ GR+WTG+ A K GL+D +GG  +   +   L      +K+     P + 
Sbjct: 473 MSIAAVDSVAGGRVWTGSRAMKAGLVDRMGGLFDAIHAAQQLAKMDMGKKLQIILYPEQK 532

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
            WF  L     +SL +     +KQ  +  L 
Sbjct: 533 SWFESLLQGRSASLSDRFAAAVKQQVLHELL 563



 Score = 75.8 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 95/251 (37%), Gaps = 21/251 (8%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQI------------------EDSQELIERIERI 60
               ++++  S        V  + + G I                     QEL+  +   
Sbjct: 25  IFAGLFWAHRSSQALPDRFVLVVPLSGGIDEVRNESSSLPFLPSHESLSLQELLFVLNHA 84

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
             D+    +++ +     S      +  A++KV+     +T     A  A YL++ A N 
Sbjct: 85  VADERVREVLLDIRGIHTSPAKIAELRDAVEKVRKGGKKVTAFLRSAEDADYLLATACNS 144

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV--NPKAVQMM 178
           I+A     +   G+  +  +    L KLGV +++ +    K+   PF     + + ++ +
Sbjct: 145 IIAERGGFLLLDGLKVESLFYTSPLGKLGVQVQAAQWKKYKSGIEPFVRTGASKEYLEQI 204

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSL 237
             ++D  Y  ++  VS+ R +       L +     +  +A+ +GL+D +    E+ + L
Sbjct: 205 NALLDEFYDDYLGYVSKRRGMSRSSFEALINNDPLVSAKKAQTLGLVDGIASFWELQRQL 264

Query: 238 YALGVDQSIRK 248
                 + + +
Sbjct: 265 TRKVSGKELAR 275


>gi|301170278|emb|CBW29884.1| protease IV (signal peptide peptidase) [Haemophilus influenzae
           10810]
          Length = 615

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 126/256 (49%), Gaps = 14/256 (5%)

Query: 36  PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             +A + + G I D +          +   + +   D+S  A+I+ ++SPGGSA+A E I
Sbjct: 322 NKIAVVNVEGTIIDGESDDENSGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEII 381

Query: 87  FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
            +  + ++   KPVI  +  MAAS GY IS  ++ I+A   ++ GSIG+   +P  +  +
Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFTMFPTFENSI 441

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV    V ++ +    S FS +      + Q  ++  Y  F+ +VS+ R +   +  
Sbjct: 442 KKIGVHADGVSTTELANT-SAFSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVD 500

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L+ G++W G++A + GL+D +G   E       L   +    ++D++     WF D   
Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 557

Query: 266 LSISSLLEDTIPLMKQ 281
             IS+LL DT    ++
Sbjct: 558 SLISTLLRDTKKGAQE 573



 Score = 88.1 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 107/287 (37%), Gaps = 44/287 (15%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52
            ++ +    V L  V L V   S+SS  + +          + + G + D+++       
Sbjct: 14  FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTTLTGDGALLLNLDGYLADNRDETLRWQD 73

Query: 53  ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93
                             ++  I++   D     L++ L+   G    A + I  AI   
Sbjct: 74  ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFQGADLPALDFIGGAISHF 133

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K+    +    +  +   Y ++  ++ I       V   G+  +  Y K  LDKL V+  
Sbjct: 134 KDAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
                  K+   PF  ++++ +A   MQ  +   ++ +V  VSE+RNI  D    L + +
Sbjct: 194 IFHVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDNI--LPNAK 251

Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            +              A++ GL+  V  + ++ + L AL    S  K
Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKKLAALFGKGSDGK 298


>gi|145639083|ref|ZP_01794691.1| protease IV [Haemophilus influenzae PittII]
 gi|145272055|gb|EDK11964.1| protease IV [Haemophilus influenzae PittII]
          Length = 576

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 126/256 (49%), Gaps = 14/256 (5%)

Query: 36  PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             +A + + G I D +          +   + +   D+S  A+I+ ++SPGGSA+A E I
Sbjct: 283 NKIAVVNVEGTIIDGESDEENAGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEII 342

Query: 87  FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
            +  + ++   KPVI  +  MAAS GY IS  ++ I+A   ++ GSIG+   +P  +  +
Sbjct: 343 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFTMFPTFENSI 402

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV    V ++ +    S FS +      + Q  ++  Y  F+ +VS+ R +   +  
Sbjct: 403 KKIGVHADGVSTTELAKT-SAFSPLAKPVQDIYQTEIEYGYDRFLEIVSKGRQLSKTQVD 461

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L+ G++W G++A + GL+D +G   E       L   +    ++D++     WF D   
Sbjct: 462 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 518

Query: 266 LSISSLLEDTIPLMKQ 281
             IS+LL DT    ++
Sbjct: 519 SLISTLLRDTKKGAQE 534



 Score = 78.5 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 87/210 (41%), Gaps = 15/210 (7%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           +++  I++   D     L++ L+   G    A + I  AI   K+    +    +  +  
Sbjct: 52  DVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHFKDAGKPVIVYADNYSQG 111

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168
            Y ++  ++ I       V   G+  +  Y K  LDKL V+    +    K+   PF  +
Sbjct: 112 QYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPHIFRVGTYKSAVEPFLRN 171

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA----------EA 218
           +++ +A   MQ  +   ++ +V  VSE+RNI  D    L + + +              A
Sbjct: 172 DMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDNI--LPNAKQYLAELKALKGNSTAYA 229

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           ++ GL+  V  + ++ + L AL    S  K
Sbjct: 230 QQRGLVTDVVTRLDLDKKLAALFGKGSDGK 259


>gi|119774858|ref|YP_927598.1| signal peptide peptidase SppA, 67K type [Shewanella amazonensis
           SB2B]
 gi|119767358|gb|ABL99928.1| signal peptide peptidase SppA, 67K type [Shewanella amazonensis
           SB2B]
          Length = 617

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 123/267 (46%), Gaps = 14/267 (5%)

Query: 36  PHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             V  I  +G I            +   + I     DDS  AL++ + SPGGSA+A E I
Sbjct: 328 DSVGVIVAKGTILNGFQAPGDIGGKSTSQLIRDARFDDSIKALVLRVDSPGGSAFASEEI 387

Query: 87  FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
            + +  +K   KPV+  +  MAAS GY IS +++ I A  T+L GSIG+       +  L
Sbjct: 388 RQELLALKAAGKPVVVSMGSMAASGGYWISASADYIYATPTTLTGSIGIFGLMTTFEDSL 447

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
             +GV    V +S   A  SPF  ++PK    +Q  ++  Y  F+ LV+  R++  ++  
Sbjct: 448 AAIGVHADGVATSEWAA-HSPFRPLSPKLESAIQRNIERGYKEFITLVANERDMTLEQVD 506

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFCDLK 264
            ++ GR+W+G +A ++GL+D +G   +       L    +   ++ +        F    
Sbjct: 507 AIAQGRVWSGKKALELGLVDEIGDMPQALAKAAELAGMATFDIQLIEQQMSPEELFIQEM 566

Query: 265 NLSISSLLEDTIPLMKQTKVQGLWAVW 291
             S+S+ L       +   VQ L  VW
Sbjct: 567 FASVSAWLPQQ--TQQSDVVQSLLRVW 591



 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 99/285 (34%), Gaps = 38/285 (13%)

Query: 1   MEFVLKKIKTRY---VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS------- 50
           + FV K I       +++ ++ + +V  S    +   S     + + G + D        
Sbjct: 19  INFVRKLIINIVFFPILILVLIVGIVALSTEDELRIESGSALVLDLSGNLVDQARRVDPL 78

Query: 51  ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
                              +++  IE  + D+   A+++ L +         A+  A+  
Sbjct: 79  TQLMRQGNQNSEDTEVLLSDVLYVIENATHDERIGAIVLDLGNMRAGISKLTAVGEALNG 138

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            +     +  + +  + + Y ++  ++ I       V   G      Y K  L+KL V+ 
Sbjct: 139 FRETGKKVVAIGDWYSRSQYFLASYADEIYLNPRGEVFIDGYAAYNLYFKSALEKLKVNT 198

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT------ 204
              +    K+   P+   +++P A +  Q ++D  +  +   V+++R I   +       
Sbjct: 199 HVFRVGTYKSAVEPYIRDDMSPAAKEATQLLIDDLWGSYADTVAKNRGIETGELVLDADT 258

Query: 205 --LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
               L      + A A K G +D +   E    ++  L  +    
Sbjct: 259 YLARLDANDGDSAALAVKQGWVDALMSDEAFRSAMVELVGEDKEE 303


>gi|283778612|ref|YP_003369367.1| signal peptide peptidase SppA, 36K type [Pirellula staleyi DSM
           6068]
 gi|283437065|gb|ADB15507.1| signal peptide peptidase SppA, 36K type [Pirellula staleyi DSM
           6068]
          Length = 352

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/278 (21%), Positives = 126/278 (45%), Gaps = 14/278 (5%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQELIE-RIERISRDDSATALIVSLSSPGGSAYAGEA 85
           + S  +     +A I+I G I +    ++ +I+R+++D++  A++V + SPGG+    + 
Sbjct: 60  FVSGDKFGDDKIAIISIEGVIAEGDGFVKRQIDRVAKDENVKAIVVRVDSPGGTVTGSDY 119

Query: 86  IFRAIQKVKNRKPVI---TEVHEMAASAGYLISCAS----NIIVAAETSLVGSIGVLFQY 138
           I   ++K++  K  I     +  MAAS GY +S A     N+I A  T+  GSIGV+  +
Sbjct: 120 ILHHLKKLRKEKSDIPLVVSMGSMAASGGYYVSMAVGDQENVIYAEPTTTTGSIGVIIPH 179

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR- 197
             +   + K  +   S+ S   K   +    +  +  +++Q  V+ S+  F  ++ E R 
Sbjct: 180 YDISGLMAKFDIKDDSIASHERKQMLTMTKPIPQEHREIIQGYVNESFGRFKSIIKEGRP 239

Query: 198 --NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR-KIKDWNP 254
                  K   L+ G I++  +A K GL+D +G  E+       L      + ++ ++  
Sbjct: 240 GFKADESKLDQLATGEIFSADQALKHGLVDKIGFIEDAIDRALELAKLDKAKTRVVEFEK 299

Query: 255 PKNYWFCDLKNLSISS--LLEDTIPLMKQTKVQGLWAV 290
           P + +      +S ++       + L+ +      + +
Sbjct: 300 PASLFDVGAIAMSRAAEPAGRSELHLLMEMSTPRPYYL 337


>gi|255021332|ref|ZP_05293380.1| Protease IV [Acidithiobacillus caldus ATCC 51756]
 gi|254969195|gb|EET26709.1| Protease IV [Acidithiobacillus caldus ATCC 51756]
          Length = 611

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 127/288 (44%), Gaps = 18/288 (6%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS----------QELIERIERISRDDSAT 67
           V+L     +           +A + I G +             +  + +++ + +D +  
Sbjct: 299 VSLDAFLQNVPPSANHPQHQIAVVPIDGMLVPGDVEKAGVVATEPTVAQLDALRKDKAVK 358

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAET 126
           A+++ +SSPGG     EAI +AI +++   KPV+  +  + AS  Y +S  ++ I A  T
Sbjct: 359 AVVLQVSSPGGDVTTAEAIRKAILRLRKAGKPVVVSMGSLGASGAYWLSTGADEIFAEPT 418

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           ++   IGV   +P     L KLG+++  V      A PSP   +     +  Q VVD  Y
Sbjct: 419 TITADIGVFMLFPDYSGTLHKLGITVSGVSMPAGGAHPSPMMPLTDSEQKAYQAVVDYLY 478

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
           H FV LV+ +R++P+ +    + GR W+G  A  +GL++ +GG +E       L   +  
Sbjct: 479 HHFVSLVATARHLPFAQAEKDAQGRAWSGIAAYHMGLVNQLGGLQEAIAEAAKLAKLEPH 538

Query: 247 RKIKDWN--PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
                +   P K      L NL++  L +  + L          A+W 
Sbjct: 539 HYDVRYLPIPEKISVQNLLGNLALGILPQGMLDLGLGGS-----ALWK 581



 Score = 72.7 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 79/206 (38%), Gaps = 11/206 (5%)

Query: 53  LIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
           L+  I+  ++D     L ++     GGS    + + +A+Q  +     I       + A 
Sbjct: 90  LVRAIDAAAKDPHIRLLELNLSDFGGGSITQLQTVAKALQTFRASGKPIYAFAPNYSQAS 149

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FSE 169
           Y ++  +N I      +V   G   +  Y K F DK+GV + S +    K+   P   ++
Sbjct: 150 YFLAAQANQIFLPHLGVVLFTGFTTKGLYFKDFFDKIGVRVYSFRQGKYKSAMEPLIRND 209

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--------GAEAKKV 221
           ++  A +  ++ +   +H +   +++ R+IP  +    +                 A   
Sbjct: 210 MSAAAREENEEWLRVWWHSYAEGIAQGRHIPVTQVDRYATQLPELIQTSKGNAAQLALSE 269

Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIR 247
           GLI  +G +++   ++          
Sbjct: 270 GLITRLGDKQDFEAAMAKALQQPEKD 295


>gi|154174848|ref|YP_001408779.1| signal peptide peptidase SppA, 36K type [Campylobacter curvus
           525.92]
 gi|112802242|gb|EAT99586.1| signal peptide peptidase SppA, 36K type [Campylobacter curvus
           525.92]
          Length = 287

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 69/278 (24%), Positives = 135/278 (48%), Gaps = 4/278 (1%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63
           +LK I T +  L  + + ++ F+ S  ++   P++A+I I+G + D+ E++ ++E +  D
Sbjct: 14  ILKFINTNFKALVFLLILILLFAPSGDIK--QPNLAQIDIKGALFDTDEILNKLEELRND 71

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
            +   +++ + SPGG+      I   ++++K  K V+       AS  Y     ++ I+A
Sbjct: 72  QNIKGVLLYIDSPGGALSPSVEIATQVKRLKESKKVLAYAGGSMASGSYYAGVNADKILA 131

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
              S +GSIGV+ Q P +     K+GVS + VK+  +K   +   + + +    +Q++VD
Sbjct: 132 NPGSFIGSIGVIMQAPNIAELAHKIGVSEQVVKAGELKEAGTFTRQWSKEERASLQNLVD 191

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
            +Y  F + V+++RN+  DK    ++ R++   +A K+GLID V G  +    L A+   
Sbjct: 192 GAYELFTKDVAQARNLSLDKKDEWANARVFLADDALKMGLIDGVCGYFDAKSELEAMSGV 251

Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
                +    P          +  I+SL         +
Sbjct: 252 DE--PVWQEKPQIEKLMEKFTHQGINSLFNAFFSAQVR 287


>gi|238757018|ref|ZP_04618206.1| Protease 4 [Yersinia aldovae ATCC 35236]
 gi|238704848|gb|EEP97377.1| Protease 4 [Yersinia aldovae ATCC 35236]
          Length = 616

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 69/269 (25%), Positives = 125/269 (46%), Gaps = 14/269 (5%)

Query: 31  VEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAY 81
           V      +A I   G I D            L  +I +   D    A+++ ++SPGGS  
Sbjct: 319 VPQQGGQIAVIFANGAIIDGPQTPGNVGGDTLAAQIRQARLDPKIKAVVLRVNSPGGSVS 378

Query: 82  AGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           A E I   +  ++   KP++  +  MAAS GY IS  +N IVA+ ++L GSIG+      
Sbjct: 379 ASELIRSELTALRAANKPLVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINT 438

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
            +  L+ +GV    V +SP+    S    + P+  QMMQ  +++ Y  F+ LV+ SR+  
Sbjct: 439 FQNTLESIGVHTDGVATSPLAD-ISITKNLPPEFAQMMQINIENGYKTFIDLVATSRHKT 497

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
            ++   ++ G +W G +AK  GL+D +G  ++  + +  L       ++  +    +   
Sbjct: 498 PEQVDQIAQGHVWIGVDAKSNGLVDQLGDFDDAVKKVAELAQL-KTWQLNWFIDEPSLSD 556

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
             L  +++S  ++  +P   Q  +    +
Sbjct: 557 MILGQMNVS--IQAILPSAIQAMLPAPIS 583



 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 105/298 (35%), Gaps = 44/298 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + FV + I   +++L ++    +Y  + S   +       + + G + D           
Sbjct: 19  LNFVREFILNLFLILLILVGVGIYLQFQSKPVEPVKGALLVNLTGVVVDQPAVNNKLRQL 78

Query: 52  ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92
                             ++++ I     D++ T L++SLS   G+     + + +A+++
Sbjct: 79  GRELLGSSSNRLQENSLFDIVDTIRLAKNDNNITGLVLSLSDFTGADQPSLQYMGKALRE 138

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            ++    I  + +      Y ++  +N I  +    V   G      Y K  L+KL V+ 
Sbjct: 139 FRDSGKPIYAIGDSYNQTQYYLASFANKIYLSPQGAVDLHGFASNNLYYKSLLEKLQVTT 198

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203
              +    K+   P    +++P A +     +   +H ++  V+ +R +  ++       
Sbjct: 199 NIFRVGTYKSAVEPMIRDDMSPAAREADSRWIGGLWHNYLTAVAANRQLTPEQLFPGAAG 258

Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNP 254
               L          A    L+D +  + +V   L           D +   I D+ P
Sbjct: 259 VISGLQAAGGSPAQYALTSKLVDQLASRPDVETELVKTFGWDKKSNDFNYVSIYDYQP 316


>gi|311031314|ref|ZP_07709404.1| signal peptide peptidase SppA, 36K type [Bacillus sp. m3-13]
          Length = 336

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 139/284 (48%), Gaps = 26/284 (9%)

Query: 31  VEDNSPHVARIAIRGQIEDS---------------QELIERIERISRDDSATALIVSLSS 75
               +  +  + + G I+D+               ++ +  +++   DD+   +IV +++
Sbjct: 54  DGSPNRKILVLEVNGVIQDTGSDVTSVFQSPGYNHRQFLRMLDQAKEDDTVQGIIVRVNT 113

Query: 76  PGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           PGG       I + + ++K    KP+   +  MAAS GY I+  +N I A+  ++ GSIG
Sbjct: 114 PGGGVSESAEIHKRLVEIKEETEKPIYISMGTMAASGGYYIAAPANKIFASPETITGSIG 173

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V+ Q        +K GV   ++KS P K   SP  +++ +  Q++Q +VD+ Y  FV+++
Sbjct: 174 VIMQGINYSELAEKYGVKFDTIKSGPYKDIMSPTKDMSEEERQILQSMVDNMYDQFVKVI 233

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
            + R +   +   ++DGRI+ G +AK + ++D +G  E+V +++       +++ ++   
Sbjct: 234 VDGRGMSESEVRRIADGRIYDGQQAKDINIVDELGYFEDVIEAMKKDHEMGNVQVVQY-- 291

Query: 254 PPKNYWFCDLKNLSISSLL------EDTIPLMKQTKVQGLWAVW 291
             +N  +  L ++++ SLL      +    L+ Q     L  ++
Sbjct: 292 -TENLGWGSLFSMNVQSLLKPESEMQMLAKLINQPNSPRLMYLY 334


>gi|282164165|ref|YP_003356550.1| putative signal peptide peptidase [Methanocella paludicola SANAE]
 gi|282156479|dbj|BAI61567.1| putative signal peptide peptidase [Methanocella paludicola SANAE]
          Length = 293

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/274 (26%), Positives = 129/274 (47%), Gaps = 26/274 (9%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHV--------------EDNSPHVARIAIRGQIEDSQ-- 51
           +   +V++ L+ +TV++ +++                    +  VA I + GQ+   +  
Sbjct: 17  LAAVFVVIGLLAVTVLWSAYAGITHQQVIPGSIAKAFGGGKTQKVAVIYVEGQMVADKSE 76

Query: 52  ----------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
                     ++++ +   + D    A+++ ++SPGG+  A E I   I + K  KPV+ 
Sbjct: 77  DAAKGSAFSSDIVKCMRAATDDPEVKAIVLRVNSPGGTPVAAEEIISQINRTKAVKPVVI 136

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
            + +MA SA Y IS  +N IVA   +  GSIGV++ +       D+LGV++   KS   K
Sbjct: 137 SMGDMATSAAYYISSQANRIVANPDTFTGSIGVIWTFKNKSKAYDELGVTVYVAKSGNFK 196

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221
              S +  +       +  +++ SY  FV  V++ RN+  DK   ++DGRI+TG  AK +
Sbjct: 197 DMGSEWRGLTENEKSYVNAIINESYDRFVTNVAKGRNMSVDKVKEIADGRIFTGTTAKGM 256

Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
           GL+D +GG  +       +   +    I   N P
Sbjct: 257 GLVDDIGGLYDAVSIARNMSNTKGKVTIVYMNEP 290


>gi|229847143|ref|ZP_04467248.1| protease IV [Haemophilus influenzae 7P49H1]
 gi|229809972|gb|EEP45693.1| protease IV [Haemophilus influenzae 7P49H1]
          Length = 615

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 126/256 (49%), Gaps = 14/256 (5%)

Query: 36  PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             +A + + G I D +          +   + +   D+S  A+I+ ++SPGGSA+A E I
Sbjct: 322 NKIAVVNVEGTIIDGESDEENAGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEII 381

Query: 87  FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
            +  + ++   KPVI  +  MAAS GY IS  ++ I+A   ++ GSIG+   +P  +  +
Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFTMFPTFENSI 441

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV    V ++ +    S FS +      + Q  ++  Y  F+ +VS+ R +   +  
Sbjct: 442 KKIGVHADGVSTTELANT-SAFSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVD 500

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L+ G++W G++A + GL+D +G   E       L   +    ++D++     WF D   
Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 557

Query: 266 LSISSLLEDTIPLMKQ 281
             IS+LL DT    ++
Sbjct: 558 SLISTLLRDTKKGAQE 573



 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 108/287 (37%), Gaps = 44/287 (15%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52
            ++ +    V L  V L V   S+SS  + +          + + G + D+++       
Sbjct: 14  FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTTLTGDGALLLNLDGYLADNRDEILRWQD 73

Query: 53  ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93
                             ++  I++   D     L++ L+   G    A + I  AI   
Sbjct: 74  ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHF 133

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K+    +    +  +   Y ++  ++ I       V   G+  +  Y K  LDKL V+  
Sbjct: 134 KDAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF  ++++ +A   MQ  +   ++ +V  VSE+RNI  D+   L + +
Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDRI--LPNAK 251

Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            +              A++ GL+  V  + ++ +   AL    S  K
Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKKFTALFGKGSDGK 298


>gi|237752037|ref|ZP_04582517.1| protease IV [Helicobacter winghamensis ATCC BAA-430]
 gi|229376604|gb|EEO26695.1| protease IV [Helicobacter winghamensis ATCC BAA-430]
          Length = 293

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/276 (23%), Positives = 126/276 (45%), Gaps = 4/276 (1%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           +EFV K +K    +L +V +    F           +VARI + G I  S   ++ +E +
Sbjct: 11  LEFVGKHLKALIFLLVVVLI----FMSKQEKVLEDANVARIDLYGAILQSDTFLQELESL 66

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            ++     +++ + SPGG+      I  AI++V  + PV+       AS  YL    ++ 
Sbjct: 67  EKNPHLKGILLVIDSPGGAIAPSVEISEAIKRVNFKIPVVAYAQGAMASGSYLAGVWADS 126

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           IVA   +++GSIGV+     +     K+G++ +++K+   K   +P    N +  +M++D
Sbjct: 127 IVANRGAMLGSIGVIINGMDLSELAKKVGIAPQTIKAGIYKEAGTPMRSWNKEEERMLKD 186

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +V   Y  FV  V  +R +   +    + GRI +   A ++GL+D VG   +    L+  
Sbjct: 187 LVQEQYWMFVEEVVNARKLDIAQEPNFAQGRILSAKNAFELGLVDKVGSIYDAQMLLFKK 246

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
                 + +K        +   +    IS+ +++ I
Sbjct: 247 ANILEPKWLKKEKDKIEVYLEKIFGEQISNGIQNGI 282


>gi|254508475|ref|ZP_05120594.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus
           16]
 gi|219548587|gb|EED25593.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus
           16]
          Length = 616

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 132/285 (46%), Gaps = 13/285 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           ++      + +     ++  +A +   G I D            +   + +   DD   A
Sbjct: 307 ISYYDYQPTMAPSFSTSANDIAVVVASGAIMDGSQPRGTVGGDTVAALLRQARNDDKVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   I+ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKEAGKPVVASMSSLAASGGYWISMSADRIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +  L++LGV    V +SP  ++    + ++  A +  Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGLNELGVYTDGVGTSPF-SDVGVTTGLSEGAAEAFQLGIEHGYK 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F +LVS++RNI   +   ++ GR+WTG +A K GL+D +G  ++       L   +   
Sbjct: 486 RFTQLVSDNRNISLTQLDNIAQGRVWTGQDAMKFGLVDSIGDFDDAVSLAAELAEVENYD 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
           I  +++   P   +  DL N    S+  D    +       L  V
Sbjct: 546 IYWVEEPLSPAQQFIQDLMNQVKVSVGIDINSYLPPALQPVLKQV 590



 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 102/319 (31%), Gaps = 44/319 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVED-NSPHVARIAIRGQIEDSQ-------- 51
           + FV   +   + + S+  +  VYF   S      +     + + G I +          
Sbjct: 19  ITFVRLALTNLFFLASIAIIYFVYFHAQSEAPTVPTESALILNLSGPIVEQPNYVNPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            +++E +     D   + L+++    P  +      I +A+ + 
Sbjct: 79  FTGSLIGQDLPKENILFDIVETLRYAKDDPKISGLVLALGDLPETNLTKLRYIAKALNEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     I         + Y ++  ++ +  A    V   G      Y K  L+KL V+  
Sbjct: 139 KASGKPIYAAGGFYNQSQYYLASYADKVYLAPDGAVLLKGYSSYSLYYKTLLEKLNVNTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF   +++ +A +     +   +  FV  ++ +R I  +    LS   
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSEEAKESASRWLSQLWGAFVDDIAANRQIKPESLN-LSMDE 257

Query: 212 IWT---------GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR-----KIKDWNPPKN 257
             T          A +  +GL+D +  +++V   L  +               D+ P   
Sbjct: 258 FLTLLKKNDGDLAALSLNIGLVDQLATRQQVRAELIDVFGSNGEDSYNHISYYDYQPTMA 317

Query: 258 YWFCDLKNLSISSLLEDTI 276
             F    N     +    I
Sbjct: 318 PSFSTSANDIAVVVASGAI 336


>gi|300951371|ref|ZP_07165213.1| signal peptide peptidase SppA [Escherichia coli MS 116-1]
 gi|300958660|ref|ZP_07170784.1| signal peptide peptidase SppA [Escherichia coli MS 175-1]
 gi|301647962|ref|ZP_07247737.1| signal peptide peptidase SppA [Escherichia coli MS 146-1]
 gi|331642370|ref|ZP_08343505.1| signal peptide peptidase SppA, 67K type [Escherichia coli H736]
 gi|300314711|gb|EFJ64495.1| signal peptide peptidase SppA [Escherichia coli MS 175-1]
 gi|300449361|gb|EFK12981.1| signal peptide peptidase SppA [Escherichia coli MS 116-1]
 gi|301073933|gb|EFK88739.1| signal peptide peptidase SppA [Escherichia coli MS 146-1]
 gi|331039168|gb|EGI11388.1| signal peptide peptidase SppA, 67K type [Escherichia coli H736]
          Length = 666

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 367 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 426

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 427 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 486

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A  MMQ  +++ Y  F+ LV+++R+
Sbjct: 487 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQLMMQLSIENGYKRFITLVADARH 545

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 546 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 604

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 605 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 633



 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 67  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 126

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 127 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 186

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 187 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 246

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP ++     
Sbjct: 247 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGA 306

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 307 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 354


>gi|157158760|ref|YP_001463065.1| protease 4 [Escherichia coli E24377A]
 gi|157080790|gb|ABV20498.1| protease 4 [Escherichia coli E24377A]
          Length = 618

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   K V+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKLVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|82776787|ref|YP_403136.1| protease 4 [Shigella dysenteriae Sd197]
 gi|81240935|gb|ABB61645.1| protease IV [Shigella dysenteriae Sd197]
          Length = 618

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVTKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D+        
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGLWMQVSGGDSKETASRGALLLDISGVIVDNPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNAVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|71907637|ref|YP_285224.1| peptidase S49 [Dechloromonas aromatica RCB]
 gi|71847258|gb|AAZ46754.1| Peptidase S49 [Dechloromonas aromatica RCB]
          Length = 320

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/281 (24%), Positives = 125/281 (44%), Gaps = 17/281 (6%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFS---WSSHVEDNSPHVARIAIRGQI-----EDSQELIE 55
             ++    +  L  V L VV  +   W +  E    H A + + G I      +++ L+ 
Sbjct: 31  SRRRWGIAFKALGFVYLLVVLIAVVDWGAGAEHQERHTAMVNLTGVIEAKGEANAENLVA 90

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGY 112
            +     + +A  +I+ ++SPGGS      I   I++++ +   KP+   V +M AS GY
Sbjct: 91  ALNSAFDEKNAVGIILRINSPGGSPVQAGIINDEIRRLRGKYPAKPLYAVVEDMCASGGY 150

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            ++ A++ I   + S+VGSIGVL         +DK GV  + + +   K    PFS   P
Sbjct: 151 YVAAAADNIYVNKASIVGSIGVLMDGFGFTGTMDKAGVERRLLTAGENKGFLDPFSPQAP 210

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
           +     Q +++  +  F+ +V   R     +T  +  G +WTGA++ ++GL D  G  + 
Sbjct: 211 QHKAHAQLLLNDIHKQFIDVVKAGRGKRLKETPEMFSGLMWTGAQSIQLGLADDFGSVDS 270

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273
           V + +          K+ D++   N      K L  S+   
Sbjct: 271 VARDIIK------AEKVLDYSVKDNIAERFAKRLGASTFAG 305


>gi|260583283|ref|ZP_05851058.1| signal peptide peptidase SppA, 67K type [Haemophilus influenzae
           NT127]
 gi|260093643|gb|EEW77556.1| signal peptide peptidase SppA, 67K type [Haemophilus influenzae
           NT127]
          Length = 615

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/256 (28%), Positives = 128/256 (50%), Gaps = 14/256 (5%)

Query: 36  PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             +A + + G I D +          +   + +   D+S  A+++ ++SPGGSA+A E I
Sbjct: 322 NKIAVVNVEGAIIDGESDDENSGGDTIARILRKAHDDNSVKAVVLRVNSPGGSAFASEII 381

Query: 87  FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
            +  + ++   KPVI  +  MAAS GY IS  ++ I+A E ++ GSIG+   +P  +  +
Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADENTITGSIGIFAMFPTFENSI 441

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GVS   V ++ +    S FS +      + Q  ++  Y  F+ +VS+ R +   +  
Sbjct: 442 KKIGVSSDGVSTTELANT-SAFSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVD 500

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L+ G++W G++A + GL+D +G   E       L   +    I+D++     WF D   
Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAIQDFSVE---WFTDDNV 557

Query: 266 LSISSLLEDTIPLMKQ 281
             IS+LL DT    ++
Sbjct: 558 SLISTLLRDTKKGAQE 573



 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 107/283 (37%), Gaps = 37/283 (13%)

Query: 2   EFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--------- 52
           + V+  +   +V+L LV +              S     + + G + D+++         
Sbjct: 17  DLVMNVVFLGFVLL-LVAIIGFSSGGKKSTALTSEGALLLNLDGYLADNRDETLRWQDAL 75

Query: 53  ----------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKN 95
                           ++  I++   D     L++ L+   G    A + I  AI + KN
Sbjct: 76  SELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISQFKN 135

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
               +    +  +   Y ++  ++ I       V   G+  +  Y K  LDKL V+    
Sbjct: 136 AGKPVIAYADNYSQGQYYLASFADEIYLNSIGKVDIHGLSQENLYFKEMLDKLAVTPHIF 195

Query: 156 KSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-------- 205
           +    K+   PF  ++++ +A   MQ  +   ++ +V  VSE+R I  D  L        
Sbjct: 196 RVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRKIKKDNVLPNAKQYLS 255

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            L   +  + A A++ GL+  V  + ++ + L AL    S  K
Sbjct: 256 DLKALKGNSTAYAQQRGLVTDVVTRLDLDKKLTALFGKGSDGK 298


>gi|68249944|ref|YP_249056.1| protease IV [Haemophilus influenzae 86-028NP]
 gi|68058143|gb|AAX88396.1| protease IV [Haemophilus influenzae 86-028NP]
          Length = 615

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/250 (28%), Positives = 124/250 (49%), Gaps = 14/250 (5%)

Query: 36  PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             +A + + G I D +          +   + +   D+S  A+I+ ++SPGGSA+A E I
Sbjct: 322 NKIAVVNVEGTIIDGESDEENAGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEII 381

Query: 87  FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
            +  + ++   KPVI  +  MAAS GY IS  ++ I+A   ++ GSIG+   +P  +  +
Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFTMFPTFENSI 441

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV    V ++ +    S FS +      + Q  ++  Y  F+ +VS+ R +   +  
Sbjct: 442 KKIGVHADGVSTTELANT-SAFSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVD 500

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L+ G++W G++A + GL+D +G   E       L   +    ++D++     WF D   
Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 557

Query: 266 LSISSLLEDT 275
             IS+LL DT
Sbjct: 558 SLISTLLRDT 567



 Score = 83.5 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 109/287 (37%), Gaps = 44/287 (15%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52
            ++ +    V L  V L V   S+SS  + +    S     + + G + D+++       
Sbjct: 14  FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTALTSEGALLLNLDGYLADNRDETLRWQD 73

Query: 53  ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93
                             ++  I++   D     L++ L+   G    A + I  AI   
Sbjct: 74  ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHF 133

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K+    +    +  +   Y ++  ++ I       V   G+  +  Y K  LDKL V+  
Sbjct: 134 KDAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF  ++++ +A   MQ  +   ++ +V  VSE+RNI  D+   L + +
Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDRI--LPNAK 251

Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            +              A++ GL+  V  + ++ +   AL    S  K
Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKKFTALFGKGSDGK 298


>gi|269102166|ref|ZP_06154863.1| protease IV [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162064|gb|EEZ40560.1| protease IV [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 617

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/266 (24%), Positives = 123/266 (46%), Gaps = 12/266 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           ++      S +     +   +A +   G I D              E +     D++  A
Sbjct: 307 ISYYDYLASLTDINVPSKNKIAVVIASGAIIDGPQRPGTTGGDTTAELLREARFDNNVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +I+ + SPGGSA+A E I   +  ++   KPV+  +  +AAS GY IS +++ I+A  T+
Sbjct: 367 VILRVDSPGGSAFASELIRNEVDALQKAGKPVVVSMSSVAASGGYWISSSADKIIANPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           + GSIG+       +  L+KLG+    V ++P          +     ++ Q  VD  Y 
Sbjct: 427 ITGSIGIFAVMTTFEKGLNKLGIYNDGVGTTPFAGVGVT-RALPQGVGEIFQLGVDHGYQ 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F+ LVS+ R++   +   ++ GR+WTGA+AK++GL+D +G  +    +   L    +  
Sbjct: 486 RFIGLVSKYRHMSLAQVDKIAQGRVWTGADAKRLGLVDELGDFDTAISAAVDLAKI-NDY 544

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLE 273
           +I+    P +     L+  +  +  +
Sbjct: 545 QIEWMQQPLSPMEMFLQQFTTEARTQ 570



 Score = 94.3 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/326 (12%), Positives = 110/326 (33%), Gaps = 40/326 (12%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVE-DNSPHVARIAIRGQIEDSQE------- 52
           + F  + +     ++ +  L   ++      E    P    + + G I + ++       
Sbjct: 19  LSFTRQLVLNLIFLILVGALFFAFYQGDKDTETQPQPGALVLDLSGPIVEQKDPVNPVDS 78

Query: 53  ------------------LIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93
                             ++E I   S D+    L+++L + P  S      I +AI   
Sbjct: 79  LLSEAMGKEPQQENVLFDIVEAIRAASGDNDIKGLVLNLQNMPETSLTKLRYIAKAITDF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +    +  + + Y ++  ++ +  +    +   G      Y K  L+KL V+  
Sbjct: 139 KQSGKPVYAYGDNFSQSQYYLASYADKVFMSPDGAILLTGYGSYTLYYKSLLEKLDVTTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-------- 203
             +    K+   P+    ++  A +     ++  +  +   V+++RNI   +        
Sbjct: 199 VFRVGTYKSAIEPYIRDNMSDAAKEANTVWLNQLWQAYTSDVAKNRNIDAAELTPKLPEF 258

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI---RKIKDWNPPKNYWF 260
              L          + K+GL+D +    E+ Q               +I  ++   +   
Sbjct: 259 IAALKSVDGDFAKLSVKLGLVDSLMTHPEMTQEFEKTFGTDQDHNFNQISYYDYLASLTD 318

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQG 286
            ++ + +  +++  +  ++   +  G
Sbjct: 319 INVPSKNKIAVVIASGAIIDGPQRPG 344


>gi|197285358|ref|YP_002151230.1| protease IV [Proteus mirabilis HI4320]
 gi|227355792|ref|ZP_03840185.1| protease IV (signal peptide peptidase) [Proteus mirabilis ATCC
           29906]
 gi|194682845|emb|CAR43150.1| protease IV (signal peptide peptidase) [Proteus mirabilis HI4320]
 gi|227164111|gb|EEI49008.1| protease IV (signal peptide peptidase) [Proteus mirabilis ATCC
           29906]
          Length = 618

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 132/265 (49%), Gaps = 14/265 (5%)

Query: 32  EDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYA 82
           E+   ++A + ++G I D + +           +I +   + +  AL++ ++SPGGS  A
Sbjct: 325 ENEDGNIAVVVVQGAIIDGESIPGSAGGSTIANQIRQARLNPNIRALVLRVNSPGGSVSA 384

Query: 83  GEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
            E I   I    + +K V+  +  MAAS GY IS  ++ I+A+ ++L GSIG+       
Sbjct: 385 SEQIRSEIAAFKQEKKHVVVSMGGMAASGGYWISTPASKIIASPSTLTGSIGIFGVINTF 444

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
           +  L+ +GV    V +SP+       +++     ++ Q  ++S Y  F++LV+ESRN   
Sbjct: 445 ENSLESIGVHSDGVSTSPLAGLSVT-NKLPEDFSELFQLNIESGYKTFLKLVAESRNKTP 503

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
            +   ++ GR+W G +AK+VGL+D  G  ++   +   +   +  + + DW  P+     
Sbjct: 504 AQVDRIAQGRVWVGVDAKQVGLVDEFGDFDDAINAAATMAKIK--QPVIDWMKPELSLSE 561

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQG 286
            +  +S+S+  +  IP   Q  +  
Sbjct: 562 QIL-MSLSANAKAIIPDPLQAYLPA 585



 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 92/278 (33%), Gaps = 39/278 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + F+ K I    +  L  + + + +    +    +      + ++G I D          
Sbjct: 19  INFIRKLILNVIFFFLLFMGVGLYFIVQETQKPTDYQGALLVDLKGVIVDQTANQNPLGQ 78

Query: 52  -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91
                              E+++ + + + D     +++ L    G+       + +A+ 
Sbjct: 79  MSRELLGVSGSQLQENSLFEVVDTLRKAATDPKIKGMVLKLDEFAGADQPSLNYVGKALT 138

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           + K     I  +    +   Y ++  ++ I  A    VG  G+ F   Y K  L+KL V+
Sbjct: 139 EFKKTGKPIYAISGYYSQPQYYLASYADKIYLASQGAVGIYGLGFSNLYYKSLLEKLKVN 198

Query: 152 IKSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT----- 204
               +    K+   P     ++ +A      +V   +  ++  V+E+R+I  +       
Sbjct: 199 THIFRVGTYKSAVEPLMRDNMSDEARAASNRLVSVLWSNYLTQVAENRSITKEDVFPGAK 258

Query: 205 ---LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
              + L          A    L+D V    +    +  
Sbjct: 259 EMIVELRKADGDNATYALNRKLVDTVSSYAQFEADMKE 296


>gi|146329644|ref|YP_001209888.1| SspA family peptidase [Dichelobacter nodosus VCS1703A]
 gi|146233114|gb|ABQ14092.1| peptidase SspA family [Dichelobacter nodosus VCS1703A]
          Length = 323

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/275 (26%), Positives = 128/275 (46%), Gaps = 19/275 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVED----NSPHVARIAIRGQIE-----DSQELIERI 57
           KI  R++ + L  L +   +           + PHVA I I G I      +++++ E +
Sbjct: 33  KIIFRFIFIGLAVLYLAVMTQIEQKNKVKTVHEPHVALIHISGVIGAQEQSNARDINEVL 92

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLIS 115
           +    +D   A++++++SPGGS      I+R I ++  +N+ PV   + +M AS  Y I+
Sbjct: 93  KNAFTNDQTQAVVLNINSPGGSPVQSGKIYREIMRLKKENKIPVYAFIEDMGASGAYYIA 152

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I     S+VGSIGV+     V   L KLG+  +   +   KA  +P   +  + +
Sbjct: 153 AAADQIYTDPASIVGSIGVISGGVGVGDLLKKLGLESRIFTAGAHKAFLNPAEPLKKEEL 212

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPY--DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
             MQ ++D  +  F+  V E R      +K   L  G  WTG +A  +GL+D +    +V
Sbjct: 213 AHMQTLLDDLHQQFIAAVKEGRGERINAEKNPELFSGLFWTGTQALPLGLVDSLDDFSQV 272

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
                 L  D     + D+ P K+ W   L+  + 
Sbjct: 273 ------LARDFKDIAVIDYTPEKSPWEAFLRQTAS 301


>gi|253773279|ref|YP_003036110.1| protease 4 [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161824|ref|YP_003044932.1| protease 4 [Escherichia coli B str. REL606]
 gi|297519580|ref|ZP_06937966.1| protease 4 [Escherichia coli OP50]
 gi|242377487|emb|CAQ32240.1| protease IV, subunit of protease IV, a signal peptide peptidase
           [Escherichia coli BL21(DE3)]
 gi|253324323|gb|ACT28925.1| signal peptide peptidase SppA, 67K type [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973725|gb|ACT39396.1| protease IV (signal peptide peptidase) [Escherichia coli B str.
           REL606]
 gi|253977919|gb|ACT43589.1| protease IV (signal peptide peptidase) [Escherichia coli BL21(DE3)]
 gi|309701988|emb|CBJ01302.1| protease IV [Escherichia coli ETEC H10407]
          Length = 618

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A  MMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQLMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|16129720|ref|NP_416280.1| protease IV (signal peptide peptidase) [Escherichia coli str. K-12
           substr. MG1655]
 gi|89108605|ref|AP_002385.1| protease IV [Escherichia coli str. K-12 substr. W3110]
 gi|170081423|ref|YP_001730743.1| protease IV (signal peptide peptidase) [Escherichia coli str. K-12
           substr. DH10B]
 gi|238900980|ref|YP_002926776.1| protease IV (signal peptide peptidase) [Escherichia coli BW2952]
 gi|256022570|ref|ZP_05436435.1| protease 4 [Escherichia sp. 4_1_40B]
 gi|307138425|ref|ZP_07497781.1| protease 4 [Escherichia coli H736]
 gi|34395936|sp|P08395|SPPA_ECOLI RecName: Full=Protease 4; AltName: Full=Endopeptidase IV; AltName:
           Full=Protease IV; AltName: Full=Signal peptide peptidase
 gi|1742877|dbj|BAA15557.1| protease IV [Escherichia coli str. K12 substr. W3110]
 gi|1788064|gb|AAC74836.1| protease IV (signal peptide peptidase) [Escherichia coli str. K-12
           substr. MG1655]
 gi|169889258|gb|ACB02965.1| protease IV (signal peptide peptidase) [Escherichia coli str. K-12
           substr. DH10B]
 gi|238863289|gb|ACR65287.1| protease IV (signal peptide peptidase) [Escherichia coli BW2952]
 gi|260449112|gb|ACX39534.1| signal peptide peptidase SppA, 67K type [Escherichia coli DH1]
 gi|315136407|dbj|BAJ43566.1| protease 4 [Escherichia coli DH1]
 gi|323940567|gb|EGB36758.1| signal peptide peptidase SppA [Escherichia coli E482]
          Length = 618

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A  MMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQLMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP ++     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|260556527|ref|ZP_05828745.1| periplasmic serine protease [Acinetobacter baumannii ATCC 19606]
 gi|260409786|gb|EEX03086.1| periplasmic serine protease [Acinetobacter baumannii ATCC 19606]
          Length = 365

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 127/295 (43%), Gaps = 14/295 (4%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQI-------EDSQELI 54
             K +   Y++  +V +     +    S    +S H+A + I G I        +S++  
Sbjct: 72  FFKTLTFIYLLFIIVLMGKGCSTTKDGSTASSSSAHLAVVDIIGTIDASSNQAVNSEDTN 131

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAG 111
           + ++R     ++ A+ ++++SPGGS    + I++ I+ +      K V   + +M AS  
Sbjct: 132 KALKRAFEASNSKAIALNINSPGGSPVQSDEIWQEIRYLKKEHPDKKVYAVIGDMGASGA 191

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I+   +SLVGSIGV+     +     KLG+  +++ +   K   S    +N
Sbjct: 192 YYIASAADEIIVNPSSLVGSIGVIMPNYGITGLAQKLGIEDRTLTAGTNKDILSMTKPIN 251

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
           P   Q +Q V+D+ +  F+  V E R          +  G  WTG +A ++G+ D  G  
Sbjct: 252 PVQRQHIQSVLDNVHTHFINAVKEGRGKRLKSNDPAIFSGLFWTGEQAIQLGVADRSGNI 311

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
             + + L  L         ++                +S  + + +   +  K+Q
Sbjct: 312 TSLMREL-KLDNKVDYTIERNPLQSILGRMGSEMGKGLSESVAERLQTSQDAKLQ 365


>gi|194438574|ref|ZP_03070663.1| protease 4 [Escherichia coli 101-1]
 gi|194422584|gb|EDX38582.1| protease 4 [Escherichia coli 101-1]
 gi|323937024|gb|EGB33304.1| signal peptide peptidase SppA [Escherichia coli E1520]
 gi|323962014|gb|EGB57612.1| signal peptide peptidase SppA [Escherichia coli H489]
 gi|323972549|gb|EGB67753.1| signal peptide peptidase SppA [Escherichia coli TA007]
          Length = 622

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A  MMQ  +++ Y  F+ LV+++R+
Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQLMMQLSIENGYKRFITLVADARH 501

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 560

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589



 Score = 99.3 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 23  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 83  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 143 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 262

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 310


>gi|52425162|ref|YP_088299.1| SppA protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307214|gb|AAU37714.1| SppA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 608

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 116/227 (51%), Gaps = 11/227 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGG 78
           SS        +A I I G I D +          + + + +  +D +  A+++ ++SPGG
Sbjct: 301 SSDFVQAKNKIAVINIEGTIVDGETNEQGVGGDSIAQLLRKAYKDKNVKAVVLRVNSPGG 360

Query: 79  SAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           SA+A E I +  + ++   KPV+  +  MAAS GY IS  ++ IVA + +L GSIG+   
Sbjct: 361 SAFASEVIRQEAENLQTAGKPVVVSMGAMAASGGYWISSTADYIVADKNTLTGSIGIFAV 420

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
            P ++  + K G+S   V +S +   PS FS +  +    +Q  ++  Y  F+ +VS+ R
Sbjct: 421 LPTLENTIKKAGISADGVTTSAL-VSPSGFSPLTAELKDSLQLQIEHGYERFLSVVSKGR 479

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           ++   +   ++ GR+W G +A K+ L+D +G  +   +    L   +
Sbjct: 480 SLTKQQVDNVAQGRVWLGEDAYKMKLVDELGDFDTAVRKAQELANGK 526



 Score = 80.4 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 106/302 (35%), Gaps = 43/302 (14%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVAR-IAIRGQIEDSQ--------------- 51
           I   + +L L  +  +               A  + + G + D +               
Sbjct: 3   IVFLFFVLLLAAIVSLTTMVKEKPNLTGDQGALLVNLNGYLADEREDGLNWRNALKKLND 62

Query: 52  ----------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVI 100
                     +++  IE  + D+    L++ L+   G      + + +AI+  +     +
Sbjct: 63  EQVASQYSTFDVVYAIENAANDERIKGLVLDLNYLDGGDLPALDYVGKAIRDFQKSGKKV 122

Query: 101 TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160
               +  + + Y ++  ++ I       VG  G+  Q  Y K  L+KL ++    +    
Sbjct: 123 IAYADNYSQSQYFLASYADEIYLNPIGEVGIEGLSAQNLYFKSMLEKLEITPHVFRVGTY 182

Query: 161 KAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA-- 216
           K+   P    +++P+A    +  + + +  +   ++E+RNI  +    L +  ++     
Sbjct: 183 KSAVEPLLRDDMSPEAKANTEQWLGTMWSNYQERIAENRNIAKNSV--LPEAGVYVDELK 240

Query: 217 --------EAKKVGLIDVVGGQEEVWQSLYALGVDQS--IRKIKDWNPPKNYWFCDLKNL 266
                    AKK   +  V  + ++ Q+L AL  +      K  D++         LK  
Sbjct: 241 ALNGDITAYAKKHKFVTQVASRLKLSQNLTALFGENEQNEPKTVDFDTYLAALPDRLKGD 300

Query: 267 SI 268
           S 
Sbjct: 301 SS 302


>gi|146299478|ref|YP_001194069.1| signal peptide peptidase SppA, 67K type [Flavobacterium johnsoniae
           UW101]
 gi|146153896|gb|ABQ04750.1| signal peptide peptidase A, SppA, 67K type [Flavobacterium
           johnsoniae UW101]
          Length = 585

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 121/255 (47%), Gaps = 10/255 (3%)

Query: 31  VEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAY 81
                  +A I  +G+I   +          +   ++   +++   A+++ + SPGGSA 
Sbjct: 297 TNIADDQIAIIYAQGEIAGGEGDVNVIGEGSMRRSLQEARKNEDVKAIVLRIDSPGGSAL 356

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
             + I+R I+  K  KPV+  +   AAS GY I+C ++ I A   ++ GSIGV    P  
Sbjct: 357 TSDLIWREIEITKKVKPVVVSMGNYAASGGYYIACNADKIFAESNTITGSIGVFGVLPNF 416

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
            P  +KLG++ + VK+    A  SPF  V+ K      + V+  Y  FV  V+E R + +
Sbjct: 417 TPLANKLGINTEQVKTHENSANYSPFVPVDEKFKAFTLEGVEQIYKTFVTHVAEGRKMTF 476

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
            +   ++ GR+W+G EA K+GL+D +GG  +       +   +     +++   +  +  
Sbjct: 477 AQVDSIAQGRVWSGTEAVKIGLVDKIGGLNDAIAEAAKIAKIKD-YSTQNYPEYEKKFSD 535

Query: 262 DLKNLSISSLLEDTI 276
            + NL  +   E  I
Sbjct: 536 LMANLPFAQSKEAFI 550



 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 90/226 (39%), Gaps = 6/226 (2%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
               ++I  IE    D +   + +            + +  A++  K     +       
Sbjct: 75  VGLTDVINAIEAAKTDSNIKGISILNDQSSLGLAQYKDLRNALESFKKSGKFVWAYANTY 134

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           +   Y ++  +N I       +   G+  +  + K F +K G+ ++ ++    K+   PF
Sbjct: 135 SQKEYYLNSVANTIYLNPAGDLDFKGLSSEVMFFKDFQEKSGIHMEVIRHGKYKSAVEPF 194

Query: 168 --SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGAEAKKVGLI 224
             ++++    + +  +++S +      +S+SRNIP DK   +++G +  T   AK   L+
Sbjct: 195 LENKMSDANREQVTALLNSIWSTVCSDISKSRNIPVDKLNEIANGLLARTPEMAKAQHLV 254

Query: 225 DVVGGQE---EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           D+V  ++      +    +  D    KI   +  +N     L N++
Sbjct: 255 DIVAYEDVYHNAIKKALKVKGDDDYNKISILDYTQNNMNTALTNIA 300


>gi|75907910|ref|YP_322206.1| signal peptide peptidase A [Anabaena variabilis ATCC 29413]
 gi|75701635|gb|ABA21311.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Anabaena variabilis ATCC 29413]
          Length = 273

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/260 (25%), Positives = 129/260 (49%), Gaps = 5/260 (1%)

Query: 36  PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
             +ARI I G I     + ++E ++ +       AL++ + SPGG+    + I+ A++++
Sbjct: 11  KQIARIEITGAIASGTRKRVLEALKTVEE-KKFPALLLRIDSPGGTVGDSQEIYSALKRL 69

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           + +  ++     ++AS G  I   +  I+A   ++ GSIGV+ +   ++  LDK+GVS K
Sbjct: 70  REKIKIVASFGNISASGGVYIGMGAEHIMANPGTITGSIGVILRGNNLERLLDKVGVSFK 129

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
            +KS P K   S   E+      ++Q+++D+SY  FV+ V+E R++  +K    +DGRI+
Sbjct: 130 VIKSGPYKDILSFDRELTEPEQDILQELIDTSYQQFVQTVAEGRSLAVEKVKSFADGRIF 189

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS--SL 271
           TG +A ++G++D +G +EE  +    L      +        +      +   S    S 
Sbjct: 190 TGQQALELGVVDRLGTEEEARRWTAELVGLDPEKTPCYTLEERKPLLSRVLPGSRKGYSR 249

Query: 272 LEDTIPLMKQTKVQGLWAVW 291
           L  +I  ++         +W
Sbjct: 250 LGASIDWLEFEMSTSGLPLW 269


>gi|301020953|ref|ZP_07185005.1| signal peptide peptidase SppA [Escherichia coli MS 196-1]
 gi|299881708|gb|EFI89919.1| signal peptide peptidase SppA [Escherichia coli MS 196-1]
          Length = 622

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A  MMQ  +++ Y  F+ LV+++R+
Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQLMMQLSIENGYKRFITLVADARH 501

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 560

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589



 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 23  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 83  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 143 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP ++     
Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGA 262

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 310


>gi|159028319|emb|CAO87217.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 273

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/269 (27%), Positives = 140/269 (52%), Gaps = 7/269 (2%)

Query: 31  VEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
                  +ARI I G I     + +++ +E I ++    AL++ + SPGG+    + I+ 
Sbjct: 6   KPKTRKQIARIEITGAIASDTRKRVLKALE-IVKERQYPALLLRIDSPGGTVGDSQEIYE 64

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
           A+++++    +I     ++AS G  I   +N I+A   ++ GSIGV+ +   ++  LDK+
Sbjct: 65  ALKRLQKTTKIIASFGNISASGGVYIGMGANYIMANPGTITGSIGVILRGNNLERLLDKV 124

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           GVS K +KS P K   S   E+  +  +++QD++D+SY  F++ V+ +RN+  ++    +
Sbjct: 125 GVSFKVIKSGPYKDILSFDRELTDEEERILQDMIDTSYQQFLQTVAGARNLDVNQVKSFA 184

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFCDLKN-L 266
           DGRI+TG +A ++G++D +G +E+       L        K +    PK        N  
Sbjct: 185 DGRIFTGQQALELGVVDRLGTEEDARLWALELAGLPPDKTKCQTIEEPKPLLSRLTGNRS 244

Query: 267 SISSLLEDTIPLMK-QTKVQG-LWAVWNP 293
            I   L+ T+  ++ + +V G L  ++ P
Sbjct: 245 QIPLGLQKTLQRLEFELEVNGQLLWLYRP 273


>gi|265766569|ref|ZP_06094398.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 2_1_16]
 gi|263252946|gb|EEZ24422.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 2_1_16]
          Length = 592

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/280 (28%), Positives = 139/280 (49%), Gaps = 19/280 (6%)

Query: 2   EFVLKKIKTRYVM-----LSLVTLTVVYFSWSSHVEDNSPHV-ARIAIRGQIED------ 49
             V   +KT   +     L ++ L  +     +  +D S ++ A     G+I D      
Sbjct: 267 NDVRDYLKTLVKIDEDDRLPILGLEEMVNIKKNVPKDKSGNILAVYYASGEITDYAGSAA 326

Query: 50  ------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103
                   ++I  + ++  DD   A+++ ++SPGGSA+A E I+ A++++K +KPVI  +
Sbjct: 327 SDEGIIGSKMIRDLRKLKEDDDVKAVVLRVNSPGGSAFASEQIWHAVKELKAKKPVIVSM 386

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
            + AAS GY ISCA++ I+A  T+L GSIG+    P VK   +K+G++   VK++     
Sbjct: 387 GDYAASGGYYISCAADSIIAEPTTLTGSIGIFGMIPNVKGLTEKIGLTYDVVKTNQFSDF 446

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
            +    VN     ++Q ++   Y  FV   +E R++  DK   +++GR+WTG  AKK+GL
Sbjct: 447 GNLMRPVNSDERALLQMMIGQGYDLFVSRCAEGRHMSKDKIEKIAEGRVWTGEMAKKIGL 506

Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
           +D +GG  +  +        +    I  +   K+      
Sbjct: 507 VDKLGGIGKALEIAAQKADLKG-YTIISYPAKKDILSTLF 545



 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 99/264 (37%), Gaps = 26/264 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49
             ++ +VTL  +  S  +        V  + ++G +                        
Sbjct: 22  LFIIGVVTLVGIISSSDTETVVKKNSVMMLDLKGTLVERTQESLEGLLGKFTGETADTYG 81

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
             +++  I++   DD+   + +  S    S  + +AI +A+   K     +    +    
Sbjct: 82  LDDILASIKKAKEDDNIKGIYIQASWLDASYASLQAIRKALDDFKESGKFVVAYSDNYTQ 141

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y +S  ++ ++     ++   G+     + K  L KLG+ ++  K    K+   PF  
Sbjct: 142 GLYYLSSVADKVMLNPKGMIEWRGLASAPIFYKDLLQKLGIEMQVFKVGTYKSAVEPFTA 201

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225
           +E++P   + +   + S ++  +  VS SR I  D   + +D     +   E+ K GL D
Sbjct: 202 TEMSPANREQVTAFIGSIWNQILDGVSASRKIGKDSLNMYADRMLMFYPSDESVKCGLAD 261

Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249
            +  Q +V   L  L       ++
Sbjct: 262 TLIYQNDVRDYLKTLVKIDEDDRL 285


>gi|284929652|ref|YP_003422174.1| signal peptide peptidase A [cyanobacterium UCYN-A]
 gi|284810096|gb|ADB95793.1| signal peptide peptidase A [cyanobacterium UCYN-A]
          Length = 272

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 80/261 (30%), Positives = 139/261 (53%), Gaps = 7/261 (2%)

Query: 34  NSPHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
            +  +ARI I+G I       L+E +E +       AL++ + SPGG+    + I+ A++
Sbjct: 9   TTKQIARIEIKGVINSETRKFLLEALETVKE-KKFPALLLRIDSPGGTVGDSQEIYEALK 67

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           K++ +  ++     ++AS G  IS  +  I+A   ++ GSIGV+ +    K  L+K+GVS
Sbjct: 68  KLQKKTKIVATFGNISASGGVYISMGAPYIMANPGTITGSIGVILRGNNFKELLNKIGVS 127

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
            + VKS P K   S   +++P+  +++Q+++D SY  F+  +S+ RN+  DKT   +DGR
Sbjct: 128 FQVVKSGPYKDILSFDRQLSPEEEKILQEMIDISYQQFITTISKERNLDMDKTKSFADGR 187

Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR----KIKDWNPPKNYWFCDLKNLS 267
           I+TG +A K+G++D +G +E+       L      +     I++  P  N  F    N S
Sbjct: 188 IFTGEQALKLGMVDRLGSEEDARCWAAELVGLDPEKTKCFTIEESKPFLNRIFSKNNNKS 247

Query: 268 ISSLLEDTIPLMKQTKVQGLW 288
             +L+ D I    +T  Q LW
Sbjct: 248 KFTLMNDRIEFELKTSGQLLW 268


>gi|166364670|ref|YP_001656943.1| protease [Microcystis aeruginosa NIES-843]
 gi|166087043|dbj|BAG01751.1| protease [Microcystis aeruginosa NIES-843]
          Length = 273

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 75/269 (27%), Positives = 141/269 (52%), Gaps = 7/269 (2%)

Query: 31  VEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
                  +ARI I G I     + +++ +E I ++    AL++ + SPGG+    + I+ 
Sbjct: 6   KPKTHKQIARIEITGAIASDTRKRVLKALE-IVKERQYPALLLRIDSPGGTVGDSQEIYE 64

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
           A+++++    +I     ++AS G  I   +N I+A   ++ GSIGV+ +   ++  LDK+
Sbjct: 65  ALKRLQKNTKIIASFGNISASGGVYIGMGANYIMANPGTITGSIGVILRGNNLERLLDKV 124

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           GVS K +KS P K   S   E+  +  +++QD++D+SY  F++ V+ +RN+  ++    +
Sbjct: 125 GVSFKVIKSGPYKDILSFDRELTDEEERILQDMIDTSYQQFLQTVAGARNLDVNQVKSFA 184

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFCDLKNLS 267
           DGRI+TG +A ++G++D +G +E+       L        K +    PK        N S
Sbjct: 185 DGRIFTGQQALELGVVDRLGTEEDARLWALELAGLPPDKTKCQTIEEPKPLLSRLTGNRS 244

Query: 268 -ISSLLEDTIPLMK-QTKVQG-LWAVWNP 293
            I   L+ T+  ++ + +V G L  ++ P
Sbjct: 245 PIPPGLQKTLQRLEFELEVNGQLLWLYRP 273


>gi|294635913|ref|ZP_06714359.1| signal peptide peptidase SppA [Edwardsiella tarda ATCC 23685]
 gi|291090759|gb|EFE23320.1| signal peptide peptidase SppA [Edwardsiella tarda ATCC 23685]
          Length = 617

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/266 (25%), Positives = 119/266 (44%), Gaps = 13/266 (4%)

Query: 32  EDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAYA 82
           +     +A I   G I D +             +I +   D +  A+I+ ++SPGGS  A
Sbjct: 321 KSGKGQIAVIFASGAIIDGEATPGSVGGDTTANQIRQARLDPAIRAIILRVNSPGGSVTA 380

Query: 83  GEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
            E I   +   +   KPV+  +  +AAS GY IS  +N I+A+ T+L GSIG+       
Sbjct: 381 SEEIRSELAAARSAGKPVVVSMGGLAASGGYWISTPANYIIASPTTLTGSIGIFGVINTF 440

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
           +  L+KLGV    V +S +    +    +      +MQ  + + Y  F+ LV+E+R+   
Sbjct: 441 EKPLNKLGVYTDGVATSSLADT-ALTKALPQSVSDLMQLTIANGYQRFINLVAEARHKTP 499

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPKNYW 259
           ++   ++ GR+W G +AK  GL+D +G  ++       L   +   ++   D        
Sbjct: 500 EQVDQIAQGRVWLGIDAKANGLVDQLGDFDDAVAKAAQLAGIKQPRLQWYVDTPSVGEML 559

Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQ 285
              L     +SL +    ++  + +Q
Sbjct: 560 LSQLTGSVQASLPQALQGVVPASLLQ 585



 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 99/281 (35%), Gaps = 39/281 (13%)

Query: 1   MEFVLKK-IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + F+ +  +    ++L LV + +            S     + + G + D+         
Sbjct: 19  LNFIREFILNLFLLLLILVGVGIYLQLQDKPAAPASKGALLVDLNGVVVDNPTLNNKFGQ 78

Query: 52  -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91
                              +L++ + +   D + T L++SL++  G+       + +A+ 
Sbjct: 79  LGRELLGMRGNTLQENSLFDLVDTLRQAKDDANITGLVLSLNNFVGADQPSLRYLGKALS 138

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           + +     I  V E  + A Y ++  ++ I  +    V   G+     Y K  LDKL VS
Sbjct: 139 EFRASGKPIIAVGESYSQAQYFLASYADKIYLSPQGSVALQGMATNNLYYKSLLDKLDVS 198

Query: 152 IKSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT----L 205
               +    K+   P    +++P+A       ++  +  ++  V+ +R++   +      
Sbjct: 199 THIFRVGTYKSAVEPLMRDQMSPQARSADSQWLNGMWDNYLTTVAANRHLSVQQLFPGAD 258

Query: 206 VLSDGRIWTG----AEAKKVGLIDVVGGQEEVWQSLYALGV 242
            L  G   TG      A     +D +  + E    L     
Sbjct: 259 QLIKGLQATGGDMAQYAVLHRWVDGLASRTEAEGILAKQFG 299


>gi|88807555|ref|ZP_01123067.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp. WH
           7805]
 gi|88788769|gb|EAR19924.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp. WH
           7805]
          Length = 270

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 127/252 (50%), Gaps = 5/252 (1%)

Query: 41  IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK- 97
           IAI G I  S  + +++ +  +   +   AL++ + SPGG+    + I  A+ +++ +  
Sbjct: 16  IAIEGAISGSTRRRVLKALREVQERE-FPALLLRIDSPGGTVGDSQEIHAALLRLREKGC 74

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
            V+     ++AS G  +  A+  IVA   ++ GSIGV+ +   +   LDK+G+  ++VKS
Sbjct: 75  RVVASFGNISASGGVYVGVAAETIVANPGTITGSIGVILRGNNLSELLDKIGIRFETVKS 134

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
              K   SP   ++P+  Q++QD++DSSY  FV  V+E R +  D     +DGR+++GA+
Sbjct: 135 GTYKDILSPDRALSPEERQLLQDLIDSSYSQFVDAVAEGRGLEPDAVRAFADGRVFSGAQ 194

Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQSIR-KIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
           AK +GL+D +G +E        L      R +      P+      L   S+ S +   +
Sbjct: 195 AKDLGLVDELGDEEHARVLAARLADLDEERCRPVTLGKPRKSLLQGLPGSSLLSAMHQRL 254

Query: 277 PLMKQTKVQGLW 288
               +   Q LW
Sbjct: 255 NTELELSGQLLW 266


>gi|309751034|gb|ADO81018.1| Protease IV [Haemophilus influenzae R2866]
          Length = 615

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 126/256 (49%), Gaps = 14/256 (5%)

Query: 36  PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             +A + + G I D +          +   + +   D+S  A+I+ ++SPGGSA+A E I
Sbjct: 322 NKIAVVNVEGTIIDGESDEENAGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEII 381

Query: 87  FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
            +  + ++   KPVI  +  MAAS GY IS  ++ I+A   ++ GSIG+   +P  +  +
Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFTMFPTFENSI 441

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV    V ++ +    S FS +      + Q  ++  Y  F+ +VS+ R +   +  
Sbjct: 442 KKIGVHADGVSTTELAKT-SAFSPLAKPVQDIYQTEIEYGYDRFLEIVSKGRQLSKTQVD 500

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L+ G++W G++A + GL+D +G   E       L   +    ++D++     WF D   
Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 557

Query: 266 LSISSLLEDTIPLMKQ 281
             IS+LL DT    ++
Sbjct: 558 SLISTLLRDTKKGAQE 573



 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 108/287 (37%), Gaps = 44/287 (15%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52
            ++ +    V L  V L V   S+SS  + +          + + G + D+++       
Sbjct: 14  FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTTLTGDGALLLNLDGYLADNRDETLRWQD 73

Query: 53  ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93
                             ++  I++   D     L++ L+   G    A + I  AI   
Sbjct: 74  ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHF 133

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K+    +    +  +   Y ++  ++ I       V   G+  +  Y K  LDKL V+  
Sbjct: 134 KDAGKPVIVYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF  ++++ +A   MQ  +   ++ +V  VSE+RNI  D    L + +
Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDNI--LPNAK 251

Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            +              A++ GL+  V  + ++ + L AL    S  K
Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKKLAALFGKGSDGK 298


>gi|113476113|ref|YP_722174.1| signal peptide peptidase A [Trichodesmium erythraeum IMS101]
 gi|110167161|gb|ABG51701.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49
           [Trichodesmium erythraeum IMS101]
          Length = 272

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/259 (27%), Positives = 133/259 (51%), Gaps = 4/259 (1%)

Query: 36  PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
             +ARI I G I     ++++E ++ +       AL++ + SPGG+    + I+ A++K+
Sbjct: 11  KQIARIEINGVIASETRKQVLEALKTVEE-RKFPALLLRIDSPGGTVADSQEIYNALKKL 69

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           + +  ++     ++AS G  I   +  I++   ++ GSIGV+ +   ++  L+K+GVS K
Sbjct: 70  QEKVKIVASFGNISASGGVYIGMGAQNIMSNPGTITGSIGVILRGNNIERLLEKVGVSFK 129

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
            VKS P K   +   E+     Q++QD++D SY  FV+ V+E+RN+  +     +DGRI+
Sbjct: 130 VVKSGPYKDILAFDREMTAPEKQILQDLIDFSYQQFVQTVAEARNLAVETVKSFADGRIF 189

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
           TG +A ++G++D +G +E+  +    L   D    +      PK +    L N  +SS L
Sbjct: 190 TGQQALELGVVDRLGTEEDARKWACNLVDLDPEKTESFTLEKPKTFLNKVLNNNQVSSKL 249

Query: 273 EDTIPLMKQTKVQGLWAVW 291
                 ++         +W
Sbjct: 250 SAAQSWVEFEVSTSGLPLW 268


>gi|254496591|ref|ZP_05109459.1| signal peptide peptidase [Legionella drancourtii LLAP12]
 gi|254354215|gb|EET12882.1| signal peptide peptidase [Legionella drancourtii LLAP12]
          Length = 321

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 126/286 (44%), Gaps = 19/286 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWS---SHVEDNSPHVARIAIRGQI-----EDSQELIERIE 58
           +   R + L ++      F          +  PHV  I + G+I      ++ +  + +E
Sbjct: 38  RWLIRVIYLLIIGFAAYQFFGGGVDESGSNTKPHVGLIDLSGEIFDAKPANADDFAKGME 97

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH---EMAASAGYLIS 115
              ++    A++V ++SPGGS    E ++  I+  + + P I       ++ ASA Y ++
Sbjct: 98  SAYKNSGLKAVVVRINSPGGSPVQAEYMYNTIKYYRAKHPEIKVYSVCVDLCASAAYYVA 157

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I A+  S+VGSIGV++        ++K+GV+ +   +   K    PFS  +    
Sbjct: 158 VAADDIYASPASMVGSIGVIYSGFGFVDAINKIGVTRRLQTAGANKGFLDPFSPDSDSQK 217

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           Q +Q ++D  +  F+  V + R            G IWTG +A  +GLID      ++ +
Sbjct: 218 QKLQVMLDIVHEQFINKVKDGRGSRLHSDNDTFSGLIWTGEQALPLGLIDGFASSGQLAR 277

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
            +        I  + D+   +N +    KNL  +  + D +PL   
Sbjct: 278 DVIK------IDSMIDYTHKQNLFDRVTKNLGTA--MADELPLSLG 315


>gi|307109116|gb|EFN57354.1| hypothetical protein CHLNCDRAFT_57181 [Chlorella variabilis]
          Length = 707

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 113/264 (42%), Gaps = 10/264 (3%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQ----------ELIERIERISRDDSATALIVSLSSP 76
            S+        VA I   G I  +           E+I ++  + ++ +  A+++ + SP
Sbjct: 354 PSTFGFTGKKAVAVIRASGAITGTSNGTGGRITSGEVIAQLRSVKKNKNVAAVVLRIDSP 413

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GG A A + ++R ++++   KPV+  + ++AAS GY ++ A + IVA   ++ GSIGV+ 
Sbjct: 414 GGEALASDLMWREVRELAKTKPVVASMADVAASGGYYMAMACSKIVAEPLTITGSIGVVT 473

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
               +K   +KLG + +++         +   +  P+   +       +Y  F    + S
Sbjct: 474 GKFNLKSLYEKLGYAKENISKGKYAQLLAENKKFTPEEEALFDASATHAYESFRDKAALS 533

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R +  +    ++ GR+W+G  A  +GL+D VGG     Q         +   ++     +
Sbjct: 534 RGMSVEAMQEVAQGRVWSGQRAATLGLVDAVGGISRALQLAKQAAGLAADEGVRVLELSR 593

Query: 257 NYWFCDLKNLSISSLLEDTIPLMK 280
                        + L   + ++ 
Sbjct: 594 AKTSPLQLVAGGGASLPAALGMLL 617



 Score = 80.8 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 91/251 (36%), Gaps = 14/251 (5%)

Query: 34  NSPHVARIAIRGQIEDSQE-----------LIERIERISRDDSATALIVSLSSPGGSAYA 82
            S     + + GQI +  +           L + +++ + D     ++V +         
Sbjct: 114 KSGSALVLKVSGQIAEQPQGRFSQTVSLPALCDCLKKAALDPRVAGVVVKIEPLACGWGK 173

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            + + R ++  +          E A    Y ++ A   + A  ++ +   G+     +++
Sbjct: 174 LQELRRHVEFFRKSGKFSMAYMERAGEKEYYLASAFEEVYAPPSASLSLRGMSVSGTFLR 233

Query: 143 PFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
             L+K+G+  +  +    K+  +    ++++    + +  ++D  +  FV  V+ SR   
Sbjct: 234 GALEKVGIEPEVRRIGVYKSAGDQLLRTDMSEAQREQLSALLDDIFGGFVADVAASRGKT 293

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL-GVDQSIRKIKDWNPPKNYW 259
            ++     D  ++   E K+ G +  +  + E+ + L A  G  +       +   K+  
Sbjct: 294 VEEVEEFLDSGVYDMEEFKRRGFVTDLLYECELEEVLKARTGGKEDELPKVGYRKYKSVR 353

Query: 260 FCDLKNLSISS 270
                     +
Sbjct: 354 PSTFGFTGKKA 364


>gi|150401144|ref|YP_001324910.1| signal peptide peptidase SppA, 36K type [Methanococcus aeolicus
           Nankai-3]
 gi|150013847|gb|ABR56298.1| signal peptide peptidase SppA, 36K type [Methanococcus aeolicus
           Nankai-3]
          Length = 290

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 123/245 (50%), Gaps = 14/245 (5%)

Query: 35  SPHVARIAIRGQIED--------------SQELIERIERISRDDSATALIVSLSSPGGSA 80
           S  V+ I + G+I                + E I  ++    +D   A+++ ++SPGG  
Sbjct: 19  SDEVSIIELTGEISSNGGDGGVFGGYSPSADEYIRLLDNAENNDGVKAVVLKINSPGGEV 78

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
            A E + R +++V  +KPV+  +  + AS  Y+ +  S+ IVA + S+VGSIGV+    +
Sbjct: 79  VASEKLARKVKEVSEKKPVVAYIETIGASGAYMAAVPSDYIVAEKHSMVGSIGVIMGLSH 138

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
                +K+G++  ++K+   K   SP   +  +  +M++ + D  Y  F++ V+E+R + 
Sbjct: 139 YYELYEKIGINTTTIKAGKYKDIGSPNRPMTDEEKKMLESMTDEMYGDFIKWVAENRGMD 198

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
            +KT  +++G+I+TG++AKK GL+D VG +++       L    +   +          F
Sbjct: 199 INKTYEVAEGKIYTGSQAKKAGLVDAVGVEQDAIDKASELANISNPTVVYYDANKPAGLF 258

Query: 261 CDLKN 265
               N
Sbjct: 259 GLSIN 263


>gi|323495030|ref|ZP_08100119.1| protease IV [Vibrio brasiliensis LMG 20546]
 gi|323310687|gb|EGA63862.1| protease IV [Vibrio brasiliensis LMG 20546]
          Length = 616

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 133/278 (47%), Gaps = 13/278 (4%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALI 70
                 + +   +  +  +A +   G I D            +   + +   DD   A++
Sbjct: 309 FYEYQSTMTPKFDLAADDIAIVVASGAIMDGSQPRGTVGGDTVAALLRQARNDDKVKAVV 368

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + + SPGGSA+A E I   ++ +K   KPV+  +  +AAS GY IS +++ IVA  T+L 
Sbjct: 369 LRVDSPGGSAFASEVIRNEVEALKEAGKPVVVSMSSLAASGGYWISMSADRIVAQPTTLT 428

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIG+       +  L+KLG+    V +SP  ++    + ++  A Q  Q  ++  Y+ F
Sbjct: 429 GSIGIFSVLTTFEKGLNKLGIYTDGVGTSPF-SDVGVTTGLSDGASQAFQMGIEHGYNRF 487

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIR 247
           + LVS+SR IP ++   ++ GR+WTG +A + GL+D +G  ++  +    L   +  ++ 
Sbjct: 488 IGLVSQSREIPLEQVDNVAQGRVWTGQDALEFGLVDKIGDFDDAVELAAELAKVEQYNLY 547

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
            +++   P   +  D  N   + L  D   ++ Q    
Sbjct: 548 WVEEPLSPAQQFIQDFMNQVSAHLGIDPTAMLPQALQP 585



 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 103/296 (34%), Gaps = 39/296 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVED-NSPHVARIAIRGQIEDSQ-------- 51
           + F+   +     + S+  +  +Y S  + V          + I G I +          
Sbjct: 19  ITFIRLALVNLIFLASIGIIYFIYTSAEAPVPTVPKESALIVNISGPIVEQPTYVNPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93
                            ++++ I     D+  + ++++L   P  +      I +A+ + 
Sbjct: 79  LTGSFFGQSLPKENVLFDIVDTIRHAKDDEQISGIVLALRDMPETNLTKLRYIAKALNEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     I  V ++   + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 139 KASGKPIYAVGDIYNQSQYYLASYADKIYLAPDGAVMLKGYSAYSLYYKTLLEKLDVNTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV----- 206
             +    K+   PF   +++ +A +     +   +  ++  V+ +R +  +         
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSKEAKESASRWLGQLWGAYIDDVATNRQLASETLNPDMDTF 258

Query: 207 ---LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDWNPPKN 257
              L        + +  VGL+D +  +++V + L  +     +      D+   ++
Sbjct: 259 LKLLKQNNGDLASLSLNVGLVDQLATRQQVRKDLIEVFGSNGEDSYNYVDFYEYQS 314


>gi|322513703|ref|ZP_08066797.1| signal peptide peptidase SppA [Actinobacillus ureae ATCC 25976]
 gi|322120487|gb|EFX92397.1| signal peptide peptidase SppA [Actinobacillus ureae ATCC 25976]
          Length = 618

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/266 (27%), Positives = 133/266 (50%), Gaps = 12/266 (4%)

Query: 33  DNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                +A I + GQI           S  +++++ +   D +   +I+ ++SPGGSA A 
Sbjct: 321 KAENKIAIINVEGQIVSGKSSQNSAGSDTIVKQLRKAREDKNVRGVILRVNSPGGSAMAS 380

Query: 84  EAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + ++ ++   KPV+T +  MAAS GY IS  S+ I+A+ T++ GSIG+       +
Sbjct: 381 EIIRQELEAIQLAGKPVVTSMGGMAASGGYWISATSDKIIASPTTITGSIGIFGLATSFE 440

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                LGV+   +  SP  +  SP   +  +  +++Q  +++ Y  F+ LVS  RNIP  
Sbjct: 441 KTAKNLGVTEDGISLSPFASS-SPLKTLPKEQAEVIQISIENGYDRFLELVSRGRNIPKQ 499

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK-DWNPPKNYWFC 261
               ++ G++W+G +A K GL+D +G  +  +  +  L   Q   K +      +  WF 
Sbjct: 500 AVDKIAQGQVWSGEDALKHGLVDELGDFDTAYDVITELVNQQRKVKGEAAIEHFRAQWFI 559

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287
           D  +  +SS L+ +   ++   + GL
Sbjct: 560 DSDDSLLSSFLKGSNLKLQLGSLLGL 585



 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 100/291 (34%), Gaps = 50/291 (17%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH----------VARIAIRGQIEDSQ-- 51
           + + I+   + L  +   ++ F+ ++ ++  S H            ++ + G + D+   
Sbjct: 11  IFRCIREFVLSLLFIIFVLICFALTTLLQQESKHQNQQPFFEKGALQLNLDGYLADNHDE 70

Query: 52  -----------------------ELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIF 87
                                  ++   I +  +D+  T L++ L     G   + + I 
Sbjct: 71  YGDLHRLIQNELGNNEPIKISTFDVARSINKAMKDERITGLVLDLGYFQGGDVASLQFIG 130

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             I+  K     +  + E  + + Y ++  ++ I   +   V      +   Y K  LDK
Sbjct: 131 AQIEYFKQSGKPVIAIGEQYSQSQYYLASFADKIYLNKAGFVDIHAFSYSNIYFKTLLDK 190

Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           +       +    K+   PF   +++P+A Q  Q  + S ++   + ++ +R I  ++  
Sbjct: 191 IEAVPHIFRVGTYKSAVEPFIRDDMSPEAKQNAQTWLTSIWNNVRQDIARNRQIQPEQV- 249

Query: 206 VLSDGRIWT----------GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
            L D + +              A    LI  V    ++  +L         
Sbjct: 250 -LPDSQTYIAKYKALKGDDAQYALNQKLITEVTTPSQIQTALIQQFGADKE 299


>gi|312886123|ref|ZP_07745742.1| signal peptide peptidase SppA, 67K type [Mucilaginibacter paludis
           DSM 18603]
 gi|311301363|gb|EFQ78413.1| signal peptide peptidase SppA, 67K type [Mucilaginibacter paludis
           DSM 18603]
          Length = 589

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 119/246 (48%), Gaps = 11/246 (4%)

Query: 37  HVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
            +A +   G+I           S+++   + ++  +D   A+++ ++SPGGS+ A + I+
Sbjct: 308 RIAIVYASGEIAGGNGDDNSIGSEKVSAALRKVRLNDKIKAVVLRVNSPGGSSLASDVIW 367

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL-D 146
           R +   K  KPVI  + + AAS GY I+CA++ I A   ++ GSIG+    P ++ F  D
Sbjct: 368 REVLLTKKAKPVIVSMGDYAASGGYYIACAADSIYAEPNTITGSIGIFAMLPNMQKFFND 427

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           KLG++   VK+            + P+   ++Q  V+  Y  F + V++ R+        
Sbjct: 428 KLGLTFDGVKTGKFADLGDVSRPLTPEERMILQAQVNRGYDTFTKAVADGRHKTQAYINS 487

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           +  GR+WTG++A K+GL+D +G   +  +S   +   +    +  +    + +    +  
Sbjct: 488 IGQGRVWTGSQAIKIGLVDKLGNINDAIRSAAKMAKLKD-YSVVAYPEQTSKFKSLGRAF 546

Query: 267 SISSLL 272
              + +
Sbjct: 547 GAETRV 552



 Score =  112 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 54/308 (17%), Positives = 105/308 (34%), Gaps = 30/308 (9%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE------------------- 48
           I +  +++ L+ +  V  S     E  S  V RIA+   I                    
Sbjct: 17  ISSFLLVIILIGIVSVATSGDKSTEVASNSVLRIALSSSIAERTPDNPLAELGFLGLNGD 76

Query: 49  ---DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
                 +++  I +   D +   + +  SS        E I  A+   K     I    E
Sbjct: 77  KAIGLNDILANIRKAKTDSNIKGIFLDESSMASGQATTEEIRNALIDFKKSGKFIIAYSE 136

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           + + + Y ++  ++ +      +    G   Q  + K  LDKLG+ ++ +K    K+   
Sbjct: 137 IYSQSFYYLASVADKVYMNPKGIFEFHGFSSQITFFKGALDKLGIDMQIIKVGTYKSAVE 196

Query: 166 PFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVG 222
           PF   +++      +   + S Y  F+  +S SR I  D    +++   I    +A K  
Sbjct: 197 PFFLDKMSDANRMQVNAYLGSLYDHFLTGISASRKINKDSLANIANNLLIQNPEDAVKYK 256

Query: 223 LIDVVGGQEEVWQSLYALGVDQSIRKIK-----DWNPPKNYWFCDLKNLSISSLLEDTIP 277
           L+D +  ++E+   L         + IK     ++         D  NL     +     
Sbjct: 257 LLDGLKYKDELLDELKDRTGVSKKKDIKSVNIGEYTKAGTDNDADTTNLDSRIAIVYASG 316

Query: 278 LMKQTKVQ 285
            +      
Sbjct: 317 EIAGGNGD 324


>gi|293609877|ref|ZP_06692179.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828329|gb|EFF86692.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 338

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 131/301 (43%), Gaps = 26/301 (8%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQI-------EDSQELI 54
             K +   Y++  +V +     +    S V  +S H+A + I G I        +S++  
Sbjct: 45  FFKTLTFIYLLFIIVLMGKGCSTSKEGSAVSSSSAHLAVVDIIGTIDASSNQAVNSEDTN 104

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAG 111
           + ++R     ++ A+ ++++SPGGS    + I++ I+ +      K V   + +M AS  
Sbjct: 105 KALKRAFEASNSKAVALNINSPGGSPVQSDEIWQEIRYLKKQHPDKKVYAVIGDMGASGT 164

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I+   +SLVGSIGV+     +     KLG+  +++ +   K   S    ++
Sbjct: 165 YYIASAADEIIVNPSSLVGSIGVIMPNYGITGLAQKLGIEDRTLTAGTNKDILSMTKPID 224

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
           P   Q +Q V+D+ +  F+  V E R          +  G  WTG +A ++G+ D  G  
Sbjct: 225 PVQKQHIQSVLDNVHTHFITAVKEGRGKRLKSNDPAIFSGLFWTGEQAIQLGVADRSGNI 284

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK------NLSISSLLEDTIPLMKQTKV 284
             + + L       ++    D+   +N     L          +S  +   +   +  K+
Sbjct: 285 TSLMREL-------NLDNKVDYTIERNPLQSILGRMGAQIGQGVSESIAQEVQTSQSAKL 337

Query: 285 Q 285
           Q
Sbjct: 338 Q 338


>gi|262382242|ref|ZP_06075379.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 2_1_33B]
 gi|262295120|gb|EEY83051.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 2_1_33B]
          Length = 582

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/259 (26%), Positives = 122/259 (47%), Gaps = 14/259 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLS 74
            +    N+P +A +   G+I+               +++ + + ++  +D   A++  ++
Sbjct: 289 KASPTKNAPEIAVLYAEGEIKAQTPGNFYDIEQSITEKMADELIKLKNNDDVKAVVFRVN 348

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGGSAY  E I+R + ++K  KPV+  +  +AAS GY ISCA+N I+A   +L GSIG+
Sbjct: 349 SPGGSAYISEQIWRQVVELKKVKPVVVSMGNVAASGGYYISCAANKIIAEPNTLTGSIGI 408

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
              +P       KL ++   VK++           +      ++Q  V+  Y  F+   +
Sbjct: 409 FGMFPNASGLFGKLALTTDIVKTNTFSDFGDLSRPMTESEKALIQGYVERGYQTFLSRCA 468

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           E R +  +    +  GR+WTG +AK+ GL+D +GG E    +   L  D     +   + 
Sbjct: 469 EGRGMTTEAVNAIGQGRVWTGEQAKERGLVDELGGIELAISTAAGLA-DLDQYSVTTVSG 527

Query: 255 PKNYWFCDLKNLSISSLLE 273
            KN+    L++      L 
Sbjct: 528 SKNFLDEFLESQLGEVKLS 546



 Score = 90.1 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 99/262 (37%), Gaps = 26/262 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPH---VARIAIRGQIEDS------------------ 50
            ++  L+++T+ Y +      D +P    V +I + G + D+                  
Sbjct: 15  IILTVLISMTIGYIATVGSTPDYTPKSNTVFKIKLDGTLADNPAENPFSALMGDKENMLS 74

Query: 51  -QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
            ++L+E I    ++D    + +        + + EAI R++   K     +    +    
Sbjct: 75  LKDLLETIRIAKQNDKIAGIYIESGLLSSGSASLEAIRRSLIDFKESGKFVVAYADNFTQ 134

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS- 168
             Y +   ++ +      ++   G+  Q  + K  +DK+G+ ++  K    K    PF  
Sbjct: 135 GNYFLCSVADKVFLNPQGILELTGLASQTLFYKGLMDKVGIEMQIFKVGTYKGAVEPFML 194

Query: 169 -EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA--EAKKVGLID 225
            +++    + +Q  + + +      ++ESR I  +     ++  ++     +  + G ID
Sbjct: 195 DKLSEANREQIQSYISTIWDNIAEGIAESRGISVNDINHYANEGLFFADPVKTVECGFID 254

Query: 226 VVGGQEEVWQSLYALGVDQSIR 247
            +  + EV   +  L      +
Sbjct: 255 ELKYKPEVEAYVKELAGQNGEK 276


>gi|168238961|ref|ZP_02664019.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194736488|ref|YP_002114312.1| protease 4 [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194711990|gb|ACF91211.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288303|gb|EDY27688.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 618

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 14/268 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +A I   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   K   KPV+  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 379 VNASEVIRAELAAAKAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  L  +GV    V +SP+    S    ++P+  QMMQ  ++  Y  F+ LV+++R 
Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        +  +      
Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556

Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284
               + +++ S  ++L + I  M    +
Sbjct: 557 LDMVMDSMTGSVRAMLPEAIQAMLPAPL 584



 Score = 99.3 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 100/282 (35%), Gaps = 40/282 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +       S+ E  +     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90
                               +++  I +   D S T +++ L +  G+       I +A+
Sbjct: 79  ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRSITGIVLDLKNFTGADQPSMRYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    I  V E  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPIFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  VS +R I   +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSHWIGELWQNYLHTVSANRQISPQQLFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             + DG       T   A    L+D +    +V ++L     
Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300


>gi|204927902|ref|ZP_03219103.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204323244|gb|EDZ08440.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 618

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 14/268 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +A I   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   K   KPV+  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 379 VNASEVIRAELAAAKAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  L  +GV    V +SP+    S    ++P+  QMMQ  ++  Y  F+ LV+++R 
Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        +  +      
Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556

Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284
               + +++ S  ++L + I  M    +
Sbjct: 557 LDMVMDSMTGSVRAMLPEAIQAMLPAPL 584



 Score = 99.7 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 100/282 (35%), Gaps = 40/282 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +       S+ E  +     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90
                               +++  I +   D + T +++ L +  G+       I +A+
Sbjct: 79  ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    I  V E  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPIFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  VS +R I   +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             + DG       T   A    L+D +    +V ++L     
Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300


>gi|300716991|ref|YP_003741794.1| Protease IV [Erwinia billingiae Eb661]
 gi|299062827|emb|CAX59947.1| Protease IV [Erwinia billingiae Eb661]
          Length = 618

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 76/275 (27%), Positives = 118/275 (42%), Gaps = 22/275 (8%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQELIER---------IERISRDDSATALIVSLSSPGGS 79
                   ++A I   G I D  E             I     D    A++  ++SPGGS
Sbjct: 319 KDNGSTDGNIAVIMASGAIMDGDETAGSVGGDTTAMEIREARLDPKIKAIVFRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   K   KPV+  +  MAAS GY IS  +N I+A+ ++L GSIG+    
Sbjct: 379 VTASETIREELAAAKEAGKPVVVSMGGMAASGGYWISTPANYIIASPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+  QMMQ  +++ Y  F+ LV+ SRN
Sbjct: 439 NTVENTLDSIGVHTDGVSTSPLAD-ISTTKALPPEVQQMMQMSIENGYKNFLGLVAHSRN 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L   +     K      + 
Sbjct: 498 KTPEQIDQIAQGHVWTGTDAKANGLVDAMGDFDDAVAKAAELAKLKDA---KLSWYQDDP 554

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
            F DL    +   +   +P   +         W P
Sbjct: 555 NFMDLLFSQMDVSVRAALPETLKA--------WMP 581



 Score = 97.0 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 112/332 (33%), Gaps = 47/332 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH--VARIAIRGQIEDSQ------- 51
           + FV + I   ++++ ++    +YF +SS      P      + + G + D         
Sbjct: 19  LNFVREFILNLFLVVLILICAGIYFQFSSSSTPAEPQKGALIVDLSGVVVDKPSVSNKLS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               ++++ I +   D + T +++ L    G+     + I +A+
Sbjct: 79  KIGRQLLGSSSDKLKENSLFDVVDAIRQAKGDANITGMVLDLRDFAGADQPSLQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    I    +  + A Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKQIYATGDSYSQAQYYLASFANKIYLSPQGTVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A       +   +  ++  VS +R I  ++     
Sbjct: 199 SSHVFRVGTYKSAVEPFLRDDMSPAARDADSRWIGELWQNYLNTVSANRQITPEQLFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNP 254
                 L      T   AK   L+D +  +  V Q L           D     I D+  
Sbjct: 259 QGVLDGLQKVGGDTAVYAKDSKLVDELASRSLVDQQLTKIFGWDKQAKDYKGTSIYDYQV 318

Query: 255 PKN-YWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
             N     ++  +  S  + D           
Sbjct: 319 KDNGSTDGNIAVIMASGAIMDGDETAGSVGGD 350


>gi|293395880|ref|ZP_06640162.1| signal peptide peptidase SppA [Serratia odorifera DSM 4582]
 gi|291421817|gb|EFE95064.1| signal peptide peptidase SppA [Serratia odorifera DSM 4582]
          Length = 622

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 120/272 (44%), Gaps = 18/272 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSA 80
              D    +A +   G I D               ++ +   D    A+++ ++SPGGS 
Sbjct: 324 PAADQGGQIAVVFANGAIMDGPQTPGTVGGDTTAAQLRQARLDPKIKAVVLRVNSPGGSV 383

Query: 81  YAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
            A E I   +  V+   KPV+  +  MAAS GY IS  +N IVA+ ++L GSIG+     
Sbjct: 384 SASEVIRSELAAVRAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVIN 443

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
             +  LD +GV    V +SP+         + P+  QMMQ  +++ Y  F+ LV+ +R +
Sbjct: 444 TYQDTLDSVGVHTDGVATSPLADLAVT-KALPPEFAQMMQLNIENGYKNFIDLVAGARKM 502

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS--IRKIKDWNPPKN 257
             ++   ++ G +WTG +AK  GL+D +G  ++  Q    L   +   +    D     +
Sbjct: 503 SPEQVDKIAQGHVWTGGDAKNNGLVDQLGDFDDAVQKAAELAKLKQWHLNWFVD-----S 557

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
               D+        +   +P   Q+ +    A
Sbjct: 558 PSLADMVLSQFGVSIHAMLPAALQSMLPAPLA 589



 Score = 83.1 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 105/299 (35%), Gaps = 45/299 (15%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51
           + F+ + I   +++L ++    +YFS+       +P  A  + + G + D          
Sbjct: 24  LNFIRELILNLFLLLLILVGVGIYFSFQGSAPAETPRGALLVNLSGVVVDQPSMKNRLLQ 83

Query: 52  -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91
                              ++++ I     D + T +++ L+   G+     + I +A++
Sbjct: 84  RSREFLGASASELQENSLFDVVDSIRSAKDDKNITGMVLQLNDFAGADQPSLQYIGKALR 143

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           + ++    I  + +      Y ++  +N I  +    V   G      Y K  LDKL V+
Sbjct: 144 EFRDSGKPIYAIGDSYNQTQYYLASFANKIYLSPQGNVDLHGFATNNLYYKSLLDKLKVT 203

Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------ 203
               +    K+   P    +++P A +     + + +  ++  V+ +R I   +      
Sbjct: 204 TNIFRVGTYKSAVEPMIRDDMSPAAREADSRWIGNLWQNYLTTVAANRQITTAQLFPGAA 263

Query: 204 --TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNP 254
                L      T   A    L+D +  +  +   L           D +   I D+ P
Sbjct: 264 GVLSGLQAAGGDTAKYALDGKLVDELASRTVMENQLIKTFGWDKQNNDFNAVSIYDYQP 322


>gi|16330327|ref|NP_441055.1| protease IV [Synechocystis sp. PCC 6803]
 gi|2499882|sp|P73689|SPPA_SYNY3 RecName: Full=Protease 4; AltName: Full=Endopeptidase IV; AltName:
           Full=Protease IV homolog; AltName: Full=Signal peptide
           peptidase
 gi|1652816|dbj|BAA17735.1| protease IV [Synechocystis sp. PCC 6803]
          Length = 610

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 77/276 (27%), Positives = 128/276 (46%), Gaps = 11/276 (3%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQELIERI---------ERISRDDSATALIVSLSSPG 77
           W +   D  P +A + + G I + +   E I           I +DD   A+++ ++SPG
Sbjct: 310 WETENHDQDPKIAIVYLEGSIVNGRGTWENIGGDRYGELLRTIRQDDDIKAVVLRINSPG 369

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           GSA A + I+R ++ ++ +KPVI  +  +AAS GY I+ A   IVA   ++ GSIGV   
Sbjct: 370 GSASAADIIWREVELLQAQKPVIISMGNVAASGGYWIATAGEKIVAQPNTVTGSIGVFSI 429

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
              V+   D+LG++   V +  +    S         + + Q  VD  Y  F+  V  +R
Sbjct: 430 LFNVENLGDRLGLNWDEVATGELANVGSSIKPKTELELAIFQRSVDQVYEIFLDKVGRAR 489

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           N+       ++ GR+WTG  A+KVGL+D +GG +       A        ++K++  P+ 
Sbjct: 490 NLSPTALDSVAQGRVWTGLAAQKVGLVDQLGGLQTAVNLAAAQAELGEQWQVKEYPTPRG 549

Query: 258 YWFCDLKNL--SISSLLEDTIPLMKQTKVQGLWAVW 291
                  NL   ++      +P   +T  Q L   W
Sbjct: 550 LNSLLWNNLIHGLTETNSVVLPPFLRTNWQQLEREW 585



 Score = 78.5 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 90/226 (39%), Gaps = 7/226 (3%)

Query: 46  QIEDSQELIERIERISRDDSATALIV---SLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102
           +I   + ++  IE+ + DD   AL++     +   G A   E     I+  ++ K ++  
Sbjct: 78  EILPLRTVVNAIEKAAEDDRIVALLIDGRRSNQVDGYANLSEVQQALIKFKQSGKKIVAY 137

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
               +    YL + A + I+      V   G+  Q  +    L K G+ +++++    K 
Sbjct: 138 GLNYSELGYYLAATA-DTILINPMGGVEINGLGAQPIFFTGALAKAGIGVQTLRVGSYKG 196

Query: 163 EPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL-SDGRIWTGAEAK 219
              P+    ++P+  Q  Q +++  +  ++  V+ +R++   +   + SD  +     A 
Sbjct: 197 AVEPYTRENLSPENRQQQQLLLNQIWQIYLTSVANNRSLTVPQLQAIASDQGLLFADIAL 256

Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
           +  L+D V   +EV   L   GV  +  +  +       +      
Sbjct: 257 REKLVDKVTYWDEVLAELKQAGVWINDPEKIEEQEEDKEFRKISLA 302


>gi|289192538|ref|YP_003458479.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus sp.
           FS406-22]
 gi|288938988|gb|ADC69743.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus sp.
           FS406-22]
          Length = 314

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/264 (27%), Positives = 141/264 (53%), Gaps = 16/264 (6%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE---------------DSQELIERIER 59
           + +  L V+  S  +        +A++ +  +I                D++  I  +++
Sbjct: 19  VGVSILLVISLSGENIDLFGGEKIAKVYLCNEIYFDYNQDDSLFPETKKDARYYINLLDK 78

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119
           + +DDS   +++ ++SPGG   A E + R ++++  +KPV+  V  + AS  Y++S  ++
Sbjct: 79  LEKDDSVKGVLLIVNSPGGEVIASEKLARKVEELAKKKPVVVYVEGLDASGAYMVSAPAD 138

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179
            IVA + S+VGSIGV     +    + KLG+++ ++K+   K   SPF  +  +  + +Q
Sbjct: 139 YIVAEKHSIVGSIGVRMDLIHYYGLMKKLGINVTTIKAGKYKDIGSPFRPMTKEEKEYLQ 198

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
            +++ +Y  FV+ V+E R++  + TL ++DG+I+TG +AKKVGL+D VG +E   + L  
Sbjct: 199 KMINETYMDFVKWVAEHRHLSINYTLKIADGKIYTGEDAKKVGLVDEVGTEETALKKLEE 258

Query: 240 LGVDQSIRKIKDWNPPKNYWFCDL 263
           L    +  +I ++   +N     L
Sbjct: 259 LANVSN-PEIVEYGLEENRGLFGL 281


>gi|15668832|ref|NP_247635.1| protease IV SppA [Methanocaldococcus jannaschii DSM 2661]
 gi|3915936|sp|Q58067|Y651_METJA RecName: Full=Putative protease MJ0651
 gi|2826302|gb|AAB98642.1| protease IV (sppA) [Methanocaldococcus jannaschii DSM 2661]
          Length = 311

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/280 (25%), Positives = 142/280 (50%), Gaps = 17/280 (6%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIE---------------DSQELIERIERISRD 63
            L V+  S  +        +A++ +  +I                D++  I  ++ + +D
Sbjct: 23  ILLVMSLSGENVDLFGGEKIAKVYLCNEIYFDYNQGDGIFPQQKKDARYYINLLDDLEKD 82

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
           DS   +++ ++SPGG   A E + R ++++  +KPV+  V  + AS  Y++S  ++ IVA
Sbjct: 83  DSVKGVLLVVNSPGGEVIASEKLARKVEELAKKKPVVVYVEGLDASGAYMVSAPADYIVA 142

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
            + S+VGSIGV     +    + KLG+++ ++K+   K   SPF  +  +  + +Q +++
Sbjct: 143 EKHSIVGSIGVRMDLMHYYGLMKKLGINVTTIKAGKYKDIGSPFRPMTKEEKEYLQKMIN 202

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
            +Y  FV+ V+E R++  + TL ++DG+I++G +AKKVGL+D VG +E+  + L  L   
Sbjct: 203 ETYMDFVKWVAEHRHLSINYTLKIADGKIYSGEDAKKVGLVDEVGTEEDALKKLEQLANV 262

Query: 244 QSIRKIKDWNPPKNYWFCDL--KNLSISSLLEDTIPLMKQ 281
            +   ++         F         I   + + +  M++
Sbjct: 263 SNPEIVEYGLEENKGLFGLTYYLGYGIGKGIGEVLYGMEK 302


>gi|168263890|ref|ZP_02685863.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205347569|gb|EDZ34200.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 618

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 122/268 (45%), Gaps = 14/268 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +A I   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   K   KPV+  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 379 VNASEVIRAELAAAKAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  L  +GV    V +SP+    S    ++P+  QMMQ  ++  Y  F+ LV+++R 
Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        +  +      
Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556

Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284
               + +++ S  ++L +TI  M    +
Sbjct: 557 LDMVMDSMTGSVRAMLPETIQAMLPAPL 584



 Score =  100 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +       S+ E  +     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90
                               +++  I +   D + T +++ L +  G+       I +A+
Sbjct: 79  ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  VS +R I   +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             + DG       T   A    L+D +    +V ++L     
Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300


>gi|262278137|ref|ZP_06055922.1| periplasmic serine protease [Acinetobacter calcoaceticus RUH2202]
 gi|262258488|gb|EEY77221.1| periplasmic serine protease [Acinetobacter calcoaceticus RUH2202]
          Length = 338

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 128/295 (43%), Gaps = 14/295 (4%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQI-------EDSQELI 54
             K +   Y++  +V +     +    S V  +S H+A + I G I        +S++  
Sbjct: 45  FFKTLTFIYLLFIIVLMGKGCSTSKEGSAVSSSSAHLAVVDIIGTIDASSNQSVNSEDTN 104

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAG 111
           + ++R     ++ A+ ++++SPGGS    + I++ I+ +      K V   + +M AS  
Sbjct: 105 KALKRAFEASNSKAVALNINSPGGSPVQSDEIWQEIRYLKKQHPDKKVYAVIGDMGASGA 164

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I+   +SLVGSIGV+     +     KLG+  +++ +   K   S    ++
Sbjct: 165 YYIASAADEIIVNPSSLVGSIGVIMPNYGISGLAQKLGIEDRTLTAGTNKDILSMTKPID 224

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
           P   Q +Q V+D+ +  F+  V E R          +  G  WTG +A ++G+ D  G  
Sbjct: 225 PVQKQHIQSVLDNVHTHFITAVKEGRGKRLKSNDPAIFSGLFWTGDQAIQLGVADRSGNI 284

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
             + + L  LG        ++                +S  +   +   +  K+Q
Sbjct: 285 TSLMREL-NLGNKVDYTIERNPLESILGRMGAQLGQGVSESIAQEVQTSQSAKLQ 338


>gi|315126527|ref|YP_004068530.1| protease IV, a signal peptide peptidase [Pseudoalteromonas sp.
           SM9913]
 gi|315015041|gb|ADT68379.1| protease IV, a signal peptide peptidase [Pseudoalteromonas sp.
           SM9913]
          Length = 621

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 69/277 (24%), Positives = 136/277 (49%), Gaps = 15/277 (5%)

Query: 18  VTLTVVYFSWSSHVEDNSP---HVARIAIRGQIEDSQ---------ELIERIERISRDDS 65
           V+           +E ++P    VA +  +G I D +              + +   DD 
Sbjct: 302 VSFGEYLSLVKPPIEFDNPMTEKVAVVVAKGTIVDGERRAGEIGGDSTAALLRKARLDDK 361

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAA 124
             A+++ + S GGS +A E I   +  +K   KPVI  +  +AAS GY I+ A+N I AA
Sbjct: 362 VKAVVLRIDSGGGSMFASEVIRAEVLALKAAGKPVIASMSSVAASGGYWIASAANEIWAA 421

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
            +++ GSIGV   +   +  L K+GV    V ++ +    S    +N K  +++Q  V+ 
Sbjct: 422 PSTITGSIGVFGTFMTFEDTLAKIGVYSDGVATTELAG-FSITRPLNEKMAKVIQMSVEE 480

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           +Y  F+ +V+E+RN+  ++   ++ GR+W  ++A+++GL+D +G +++  ++   L    
Sbjct: 481 AYGRFLDVVAEARNMTPEQVDKIAQGRVWIASQAQELGLVDKLGNKQDAIKAAAELAKL- 539

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
           +   +K      +     L+++  S+ ++  + L  Q
Sbjct: 540 NYYDVKTIKQSLSPQEKMLQDIFGSAAVKSVLGLETQ 576



 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 100/318 (31%), Gaps = 37/318 (11%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------- 50
           + F  + I     +  +V   V   S    +      V R+ + G I +           
Sbjct: 13  INFSRRLILNVLFLFLVVIFIVSVSSDGDKIIVEEGSVLRLNLNGPIVEEKTYIDPVEAA 72

Query: 51  ----------------QELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93
                            +++E I   ++D   +A+++ L   P       + I +A++  
Sbjct: 73  INDATASADSPSEILLDDVVEVINEAAQDSRISAILLDLQEMPKAHLNKLKQITQALETF 132

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +         A Y I+  ++ I       V   G      Y K  L+KL V+  
Sbjct: 133 KATGKKVIASGYYYTQAQYYIAAHADEIAMHPYGSVLIEGYGMYPLYFKDALEKLEVTQH 192

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-- 209
             +    K+   PF  ++++  A +  +  + + ++ + + VS  R           D  
Sbjct: 193 IFRVGTFKSAVEPFIRNDMSEAAKEANRVWLGALWNEYKQDVSAVRPFDESNFDETMDVY 252

Query: 210 ------GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
                      G  A     +D +   +++ Q L  L  +    K         Y     
Sbjct: 253 LAKMQAANGDAGKYALDNQWVDSLKTNQQIRQQLIELVGENEDGKTFKQVSFGEYLSLVK 312

Query: 264 KNLSISSLLEDTIPLMKQ 281
             +   + + + + ++  
Sbjct: 313 PPIEFDNPMTEKVAVVVA 330


>gi|270262164|ref|ZP_06190436.1| protease 4 [Serratia odorifera 4Rx13]
 gi|270044040|gb|EFA17132.1| protease 4 [Serratia odorifera 4Rx13]
          Length = 618

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 120/271 (44%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
               D    +A +   G I D                + +   D S  A++  ++SPGGS
Sbjct: 319 KPTPDQGGKIAVVFANGAIMDGPQTPGAVGGDTTAAELRQARLDPSIKAVVFRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +  V+   KPV+  +  MAAS GY +S  ++ I+A+ ++L GSIG+    
Sbjct: 379 VSASEVIRSELAAVRAAGKPVVVSMGGMAASGGYWVSTPADYIIASPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  LD +GV    V +SP+         + P+  QMMQ  +++ Y  F+ LV++SR 
Sbjct: 439 NTYEQTLDSIGVHTDGVATSPLADLAVT-KALPPEFSQMMQLNIENGYKNFIDLVAKSRK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           +   +   ++ G +W G++AK  GL+D +G  ++  +    L       ++  +    + 
Sbjct: 498 MTPQQVDQIAQGHVWLGSDAKANGLVDQLGDFDDAVKKAAELAKL-KQWQLNWFVDTPSL 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
               L    +S  +   +P   Q+ +    A
Sbjct: 557 TDMVLSQFGVS--IHAMLPAAIQSMLPAPLA 585



 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 84/237 (35%), Gaps = 17/237 (7%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASA 110
           ++++ I +   D + T +++ L+   G+     + I +A+++ ++    I  + +     
Sbjct: 99  DVVDSIRKAKDDKNITGMVLQLNDFAGADQPSLQYIGKALREFRDSGKPIFAIGDSYNQT 158

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FS 168
            Y ++  +N +  +    V   G      Y K  L+KL V+    +    K+   P    
Sbjct: 159 QYYLASYANKVYLSPQGAVDLHGFATNNLYYKSLLEKLKVTTNIFRVGTYKSAVEPLIRD 218

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKK 220
           +++P A +     +   +  ++  V+ +R I   +           L      T   A  
Sbjct: 219 DMSPAAREADSRWIGGLWQNYLDTVAANRQITPQQLFPGAAGVLSGLQAAGGDTAKFALD 278

Query: 221 VGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
             L+D +  +  +   L           D +   I D+ P           +  ++ 
Sbjct: 279 SKLVDELASRTVIENQLIKTFGWDKQANDFNATSIYDYQPKPTPDQGGKIAVVFANG 335


>gi|147868|gb|AAA24648.1| protease IV [Escherichia coli]
          Length = 618

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGG+
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGT 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A  MMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQLMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP ++     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|257454429|ref|ZP_05619691.1| signal peptide peptidase SppA, 36K type [Enhydrobacter aerosaccus
           SK60]
 gi|257448195|gb|EEV23176.1| signal peptide peptidase SppA, 36K type [Enhydrobacter aerosaccus
           SK60]
          Length = 360

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 121/266 (45%), Gaps = 21/266 (7%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYF----SWSSHVEDNSPHVARIAIRGQI-----EDSQELI 54
             K I   YV+L    +         S  S ++ + PH+A + ++G I      +SQ + 
Sbjct: 61  FFKLITLGYVLLFGAVVAKGCSGSAKSGMSDIDMSKPHLAVVDVKGVISSDNEANSQAVG 120

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFR---AIQKVKNRKPVITEVHEMAASAG 111
           E +     +D A A+ + ++SPGGS    + I++    ++K    K +   + +M AS  
Sbjct: 121 EALTEAFDNDQAQAVALRINSPGGSPVQSDEIWQTMTELRKAHPNKKLYAVIEDMGASGA 180

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I    +SLVGSIGV+     V+  +DKLGV   ++ +   K   S    ++
Sbjct: 181 YYIASAADEIWVNPSSLVGSIGVIMPSYNVQGLMDKLGVKDGTMTAGAHKDILSMSRPLS 240

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGG 229
               Q +Q V+D+++  F+  V + R           L  G  W+G +A  +GL D  GG
Sbjct: 241 EFERQHVQGVLDNTHAHFINAVKQGRGNRLKNPDANQLFSGLFWSGEQAINLGLADKKGG 300

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPP 255
              +   L        +  + ++NP 
Sbjct: 301 ISTLESQL-------KLDNVVEYNPE 319


>gi|257869238|ref|ZP_05648891.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257803402|gb|EEV32224.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 341

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 119/268 (44%), Gaps = 17/268 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPG 77
             D++  + R+ + G I ++                +E +     D +   ++  ++SPG
Sbjct: 55  AGDSNNRILRLTLEGTIANTSGGGLFSTEGYDHQLFLEELRAAQEDPTIKGILFEVNSPG 114

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA-SNIIVAAETSLVGSIGVLF 136
           G  Y    I R ++K+K     +    +  A++G     A ++ I A + ++ GSIGV+ 
Sbjct: 115 GGVYESAEIAREMKKIKEIGIPVYVSMKNTAASGGYYVSAGADKIFATDETVTGSIGVIM 174

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                   LDKLG+   + KS  +K   S       +  +++Q  VD++Y  FV +V+E 
Sbjct: 175 SGLNYSGLLDKLGIEDSTYKSGALKDMGSSTRAATDEDKKVLQTYVDNAYGRFVSIVAEG 234

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R +  +    ++DGRI+ G +A + GL+D +G  E+ + +L A    +   +I ++    
Sbjct: 235 RGMSEEAVRKIADGRIYDGQQAVENGLVDEIGFPEDAFAALEADQGLEDA-EIFEYGVGS 293

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKV 284
             +        ++      +   + +++
Sbjct: 294 TGFASTWLGSKLAEF--QGLKASESSRL 319


>gi|255012266|ref|ZP_05284392.1| protease IV [Bacteroides sp. 2_1_7]
          Length = 588

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/259 (26%), Positives = 122/259 (47%), Gaps = 14/259 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLS 74
            +    N+P +A +   G+I+               +++ + + ++  +D   A++  ++
Sbjct: 295 KASSTKNAPEIAVLYAEGEIKAQTPGSLYDIEQSITEKMADELIKLKNNDDVKAVVFRVN 354

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGGSAY  E I+R + ++K  KPV+  +  +AAS GY ISCA+N I+A   +L GSIG+
Sbjct: 355 SPGGSAYISEQIWRQVVELKKVKPVVVSMGNVAASGGYYISCAANKIIAEPNTLTGSIGI 414

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
              +P       KL ++   VK++           +      ++Q  V+  Y  F+   +
Sbjct: 415 FGMFPNASGLFGKLALTTDIVKTNTFSDLGDLSRPMTESEKALIQGYVERGYQTFLSRCA 474

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           E R +  +    +  GR+WTG +AK+ GL+D +GG E    +   L  D     +   + 
Sbjct: 475 EGRGMTTEAVNAIGQGRVWTGEQAKERGLVDELGGIELAISTAAGLA-DLDQYSVTTVSG 533

Query: 255 PKNYWFCDLKNLSISSLLE 273
            KN+    L++      L 
Sbjct: 534 SKNFLDEFLESQLGEVKLS 552



 Score = 90.1 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 99/262 (37%), Gaps = 26/262 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPH---VARIAIRGQIEDS------------------ 50
            ++  L+++T+ Y +      D +P    V +I + G + D+                  
Sbjct: 21  IILTVLISMTIGYIATVGSTPDYTPKSNTVFKIKLDGTLADNPAENPFSALMGDKENMLS 80

Query: 51  -QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
            ++L+E I    ++D    + +        + + EAI R++   K     +    +    
Sbjct: 81  LKDLLETIRIAKQNDKIAGIYIESGLLSSGSASLEAIRRSLIDFKESGKFVVAYADNFTQ 140

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS- 168
             Y +   ++ +      ++   G+  Q  + K  +DK+G+ ++  K    K    PF  
Sbjct: 141 GNYFLCSVADKVFLNPQGILELTGLASQTLFYKGLMDKVGIEMQIFKVGTYKGAVEPFML 200

Query: 169 -EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA--EAKKVGLID 225
            +++    + +Q  + + +      ++ESR I  +     ++  ++     +  + G ID
Sbjct: 201 DKLSEANREQIQSYISTIWDNITEGIAESRGISVNDINHYANEGLFFADPVKTVECGFID 260

Query: 226 VVGGQEEVWQSLYALGVDQSIR 247
            +  + EV   +  L      +
Sbjct: 261 ELKYKPEVEAYVKELAGQNGEK 282


>gi|169630869|ref|YP_001704518.1| protease IV SppA [Mycobacterium abscessus ATCC 19977]
 gi|169242836|emb|CAM63864.1| Possible protease IV SppA (endopeptidase IV) [Mycobacterium
           abscessus]
          Length = 583

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 64/273 (23%), Positives = 124/273 (45%), Gaps = 21/273 (7%)

Query: 34  NSPHVARIAIRGQIEDSQE---------------LIERIERISRDDSATALIVSLSSPGG 78
           + P +  + + G I   +                + E +     DDS  A+++ + SPGG
Sbjct: 289 SRPAIGVVTLAGPIVSGRSGPRLFPPGPASGGDVIAEALRDAVADDSVAAIVLRVDSPGG 348

Query: 79  SAYAGEAIFRAI-QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           S    E I+R + +  +  KPV+  +  +A S GY ++ +++ I+A   ++ GSIGVL  
Sbjct: 349 SVNGSETIWREVVRAREAGKPVVVSMGSVAGSGGYYVAMSADAIIANPGTVTGSIGVLTG 408

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
               K   +KLGV   S++++      S       +   +++  +D  Y  FV+ V++ R
Sbjct: 409 KFITKGLKEKLGVGSDSLRTNANADAWSSNEPFTDEQRDLVEAEIDMHYEDFVQRVADGR 468

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           N+  D    ++ GRIW+G +A + GL+D +GG  E       L    +   ++  N P +
Sbjct: 469 NLTVDAVKAVAQGRIWSGKDALEHGLVDELGGFREAVAKAKQLADIGADDNVRIANFPSS 528

Query: 258 YWFCDLKNL-----SISSLLEDTIPLMKQTKVQ 285
                L+       + +++ +  +  + Q  V+
Sbjct: 529 PLSSLLRQRSSSQPAAAAVTDAVLGRVAQLAVE 561



 Score = 92.8 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 79/202 (39%), Gaps = 2/202 (0%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
             +  I  I R   D     LI  +  P  +A A + +  AI+     KP +       +
Sbjct: 60  SLRHTIAAIHRAIEDPRVAGLIARVQIPPAAAGAVQELRAAIEAFSAVKPSLAWSETYPS 119

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
           +  Y ++ A   +    +  VG IG   +  +++  LDK GV  + +     K+  + F+
Sbjct: 120 TLAYYLASAFGEVWMQPSGTVGLIGFAAKGTFLRGALDKAGVEAQFLTRGQYKSAANLFT 179

Query: 169 E--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
           E        +    +++S        V+ SR +   +   L+D       +A   GL+D 
Sbjct: 180 EDGYTDAQREADGRLLESLSEQVRDSVAVSRKLDPAEVDALADRAPLRRTDAVAGGLVDR 239

Query: 227 VGGQEEVWQSLYALGVDQSIRK 248
           +G ++E +  +  L   Q  R 
Sbjct: 240 IGYRDEAYARIGELIGLQDDRD 261


>gi|91223668|ref|ZP_01258933.1| protease IV [Vibrio alginolyticus 12G01]
 gi|91191754|gb|EAS78018.1| protease IV [Vibrio alginolyticus 12G01]
          Length = 616

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/274 (24%), Positives = 123/274 (44%), Gaps = 13/274 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           +       +           +A +   G I D            +   + +   D+   A
Sbjct: 307 IGYYDYLATIRPDYTLPQHDIAVVLASGAIMDGQQPRGTVGGDTVASLLRQARNDEKVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   ++ + +  KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEVEALKQAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +    KLG++   V +SP  +     + ++  A Q+ Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGFSKLGINTDGVGTSPF-SGDGITTGLSEGASQVFQLGIEHGYK 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-- 245
            F+ LV E+R++  ++   ++ GR+WTG +A   GL+D +G  ++  +    L       
Sbjct: 486 RFISLVGENRDMSLEEVDKVAQGRVWTGQDALSFGLVDQMGDFDDAVELAAKLANVTDYG 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
           I  +++   P   +  +       SL  D   L+
Sbjct: 546 IYWVEEPLSPTELFLQEFMKQVKVSLGIDATSLL 579



 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 91/284 (32%), Gaps = 37/284 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + F+   +     +L +      + ++              + + G I + +        
Sbjct: 19  ITFIRLALANLIFLLMIAVFYFAFTYTGDGQPVVEKESALVMNLSGPIVEQRRYVNPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93
                            ++++ I     D   + L+++L   P  +      I +A+ + 
Sbjct: 79  FAGSLLGNELPKENVLFDIVDTIRYAKDDPKVSGLVLALRDMPETNLTKLRYIAKALNEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ +  A    V   G      Y K  L+KL VS  
Sbjct: 139 KASGKPVYAVGDFYNQSQYYLASYADKVYLAPDGGVLIKGYSAYSMYYKTLLEKLDVSTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF   +++  A +     V   +  FV  V+ +RNI         D  
Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESATRWVTQLWSAFVDDVTTNRNIDAKVLNPTMDEL 258

Query: 212 I--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           I             A K+GL+D +  ++++              
Sbjct: 259 INEMKSVNGDIAQLAVKLGLVDELATRQDIRTLFAKQFGSDGKD 302


>gi|153833866|ref|ZP_01986533.1| signal peptide peptidase SppA, 67K type [Vibrio harveyi HY01]
 gi|148869808|gb|EDL68782.1| signal peptide peptidase SppA, 67K type [Vibrio harveyi HY01]
          Length = 616

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/274 (24%), Positives = 125/274 (45%), Gaps = 13/274 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           +       +   ++  +   +A +   G I D            +   + +   DD   A
Sbjct: 307 IGYYDYLATMRPNLTPSENDIAVVVASGAIMDGQQPRGTVGGDTVASLLRQARNDDKVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   ++ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEVEALKEAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +    KLG+S   V +SP  +     + ++  A Q  Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGFTKLGISTDGVGTSPF-SGDGITTGLSDGASQAFQLGIEHGYK 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F+ LV  +R++  D+   ++ GR+WTG +A   GL+D +G  ++  +    L   +   
Sbjct: 486 RFISLVGSNRDMSLDEVDKVAQGRVWTGQDAMSFGLVDQMGDFDDAVKLAAKLADVENYE 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
           +  +++   P   +  +  N    SL  D    +
Sbjct: 546 LYWVEEPLSPTEQFVQEFMNQVKVSLGIDATSFL 579



 Score = 94.3 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 92/284 (32%), Gaps = 37/284 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + FV   +     ++ +      + ++              + + G I + +        
Sbjct: 19  ITFVRLALANLIFLVMIAVFYFAFTYTGEGQPTVEKESALVMNLSGPIVEQRRYVNPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93
                            ++++ I     D   + L+++L   P  +      I +A+ + 
Sbjct: 79  IAGSVLGNEMPKENVLFDIVDTIRYAKDDPKVSGLVLALRDMPETNLTKLRYIAKALNEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ +  A    V   G      Y K  L+KL VS  
Sbjct: 139 KTSGKPVYAVGDFYNQSQYYLASYADKVFLAPDGGVLIKGYSSYSMYYKTLLEKLDVSTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF   +++  A +     +   +  FV  V+ +RNI         D  
Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESATRWITQLWSAFVDDVATNRNIDTKALNPTMDEL 258

Query: 212 I--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           +             A K+GL+D +  +++V +            
Sbjct: 259 LAEMKSVDGDLAQLAVKMGLVDELATRQDVRKLFAKEFGSDGKD 302


>gi|330446548|ref|ZP_08310200.1| signal peptide peptidase SppA, 67K type [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490739|dbj|GAA04697.1| signal peptide peptidase SppA, 67K type [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 587

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 116/262 (44%), Gaps = 12/262 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           ++            E +   VA +   G I D            +   + +   D    +
Sbjct: 278 ISYYDYLSMLVDDQEPSKNKVAVVVASGAIVDGKSSQGTAGGDTIAGLLRKARFDKDVKS 337

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +I+ + SPGGSA+A E I   +  +K   KPV+  +  +AAS GY IS +++ I+A  T+
Sbjct: 338 VILRVDSPGGSAFASEVIRNEVDALKEAGKPVVVSMSSVAASGGYWISSSASKIIAQPTT 397

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           + GSIG+       +  L+KLGV    V ++P          +     ++ Q  VD+ Y 
Sbjct: 398 ITGSIGIFAILTTFEKSLEKLGVYSDGVGTTPFAGVGVT-RALPENIAKIFQMGVDNGYQ 456

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F+ LVS+ R++  ++   ++ GR+WTG +AK  GL+D +G  +       AL       
Sbjct: 457 RFIGLVSKYRHMSLEQADKIAQGRVWTGKDAKARGLVDELGDFDTAITEAVALAKV-DNY 515

Query: 248 KIKDWNPPKNYWFCDLKNLSIS 269
           ++     P +      K +S  
Sbjct: 516 QLVWMQQPLSPIQQFFKEMSGE 537



 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 108/314 (34%), Gaps = 39/314 (12%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------------- 51
             ++ +  +   + S     +        + + G I + +                    
Sbjct: 2   IFLVIVGAIIFAFNSDDESADKPEASALMLDLSGPIVEQKNYDNPLDGIVSNVMGQPPVE 61

Query: 52  -----ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
                +++E I   + D S T L+++  + P  S      I +AIQ+ K     +     
Sbjct: 62  QNVLFDIVEAIRTAATDSSITGLVLNLKNMPETSLTKLRYIAKAIQEFKASGKPVYAYGG 121

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
             + + Y ++  ++ +  +    V   G      Y K  L+KL V+    +    K+   
Sbjct: 122 HYSQSQYYLASYADKVFMSPDGGVMLTGYGTYTLYYKSLLEKLDVTTHVFRVGTYKSFVE 181

Query: 166 PF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTG 215
           P+    ++  A +     +D  +  +   V+++RNI               L+  +    
Sbjct: 182 PYIRDGMSAAAKEANTVWLDQLWGAYTSDVAKNRNIDAATLTPETDNFIEQLTAVKGDFA 241

Query: 216 AEAKKVGLIDVVGG---QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
             +KK+GL+D +       ++    +    + S ++I  ++           + +  +++
Sbjct: 242 QLSKKMGLVDELVTRPQLSQILIKAFGDNGEHSFKQISYYDYLSMLVDDQEPSKNKVAVV 301

Query: 273 EDTIPLMKQTKVQG 286
             +  ++     QG
Sbjct: 302 VASGAIVDGKSSQG 315


>gi|156975314|ref|YP_001446221.1| protease [Vibrio harveyi ATCC BAA-1116]
 gi|156526908|gb|ABU71994.1| hypothetical protein VIBHAR_03044 [Vibrio harveyi ATCC BAA-1116]
          Length = 616

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/274 (24%), Positives = 125/274 (45%), Gaps = 13/274 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           +       +   ++  +   +A +   G I D            +   + +   DD   A
Sbjct: 307 IGYYDYLATMRPNLAPSENDIAVVVASGAIMDGQQPRGTVGGDTVASLLRQARNDDKVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   ++ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEVEALKEAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +    KLG+S   V +SP  +     + ++  A Q  Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGFTKLGISTDGVGTSPF-SGDGITTGLSDGASQAFQLGIEHGYK 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F+ LV  +R++  D+   ++ GR+WTG +A   GL+D +G  ++  +    L   +   
Sbjct: 486 RFISLVGSNRDMSLDEVDKVAQGRVWTGQDAMSFGLVDQMGDFDDAVKLAAKLADVENYE 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
           +  +++   P   +  +  N    SL  D    +
Sbjct: 546 LYWVEEPLSPTEQFVQEFMNQVKVSLGIDATSFL 579



 Score = 94.3 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 93/284 (32%), Gaps = 37/284 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + FV   +     ++ +      + ++  S           + + G I + +        
Sbjct: 19  ITFVRLALANLIFLVMIAVFYFAFTYTGESQPTVEKESALVMNLSGPIVEQRRYVNPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93
                            ++++ I     D   + L+++L   P  +      I +A+ + 
Sbjct: 79  IAGSVLGNEMPKENVLFDIVDTIRYAKDDPKVSGLVLALRDMPETNLTKLRYIAKALNEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ +  A    V   G      Y K  L+KL VS  
Sbjct: 139 KTSGKPVYAVGDFYNQSQYYLASYADKVFLAPDGGVLIKGYSSYSMYYKTLLEKLDVSTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF   +++  A +     +   +  FV  V+ +RNI         D  
Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESATRWITQLWSAFVDDVATNRNIDAKALNPTMDEL 258

Query: 212 I--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           +             A K+GL+D +  +++V +            
Sbjct: 259 LAEMKSVDGDLAQLAVKMGLVDELATRQDVRKLFAKEFGSDGKD 302


>gi|212692949|ref|ZP_03301077.1| hypothetical protein BACDOR_02450 [Bacteroides dorei DSM 17855]
 gi|237723560|ref|ZP_04554041.1| protease IV [Bacteroides sp. D4]
 gi|212664505|gb|EEB25077.1| hypothetical protein BACDOR_02450 [Bacteroides dorei DSM 17855]
 gi|229438111|gb|EEO48188.1| protease IV [Bacteroides dorei 5_1_36/D4]
          Length = 593

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 76/278 (27%), Positives = 133/278 (47%), Gaps = 19/278 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVSLSSPGG 78
             + +   +A     G+I D+           Q++ + + ++  +D   A+++ ++SPGG
Sbjct: 298 PKDKSGNVIAVYYAYGEILDAPGSSTEDCIDVQKMCKGLRKLRDNDDVKAVVLRVNSPGG 357

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQ 137
           SAY  + I+R + ++K +KPVI  + + AAS GY ISCA++ I A  T+L GSIG+    
Sbjct: 358 SAYGSDQIWREVVRLKEKKPVIVSMGDYAASGGYYISCAADRIFADPTTLTGSIGIFGMM 417

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKA-----EPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           Y   K F + LG++   VK++ M        P     +N    ++MQ+ V+  Y  FV  
Sbjct: 418 YSGEKLFTETLGLNFDVVKTNKMADLGASLGPILTRPLNASEQELMQNYVNRGYKLFVSR 477

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
            +E R +  +    +++GR+WTGA AK +GL+D +GG ++   +       ++   I   
Sbjct: 478 CAEGRKMSTEAIEKVAEGRVWTGAMAKDLGLVDELGGIDKALNAAATQAGIENYSIIGY- 536

Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
            P K   F  L        +   I     +      A+
Sbjct: 537 -PEKENIFASLLGNQKKHYVNSEIKEYLGSYYNSFKAL 573



 Score =  110 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 100/261 (38%), Gaps = 23/261 (8%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQE 52
           + +L ++TL  +  S  +        +  +  +G +                       +
Sbjct: 22  FTILGIITLVGIVASSDTETVVKDNSIFVLDFKGSLSERVQENPLQQLLGEEFEAYGLDD 81

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++  I++   +D    + +  S    S  + E I  A+   K     I    +  A   Y
Sbjct: 82  ILASIKKAKDNDKIKGIYIQPSYLEASYASLEEIRNALLDFKESGKFIVAYADQYAQKMY 141

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEV 170
            +S  ++ I+      +G  G   Q  + K  + KLG+ I+  +    K+   PF  +E+
Sbjct: 142 YLSSVADKIIINPQGSIGWHGAGMQPVFFKNLVSKLGLEIQVFRVGTYKSAVEPFIATEM 201

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--GAEAKKVGLIDVVG 228
           +P   + M + ++S ++     VS+SR+IP D     +D  +      E  + GL D + 
Sbjct: 202 SPANREQMTECLESVWNRIQADVSDSRHIPTDTLNAYADRYMDFCQAEEYVQCGLADTLM 261

Query: 229 GQEEVWQSLYALGVDQSIRKI 249
            ++EV   L  L       K+
Sbjct: 262 YKDEVISYLKQLSGRDEDDKL 282


>gi|254423024|ref|ZP_05036742.1| signal peptide peptidase SppA, 67K type [Synechococcus sp. PCC
           7335]
 gi|196190513|gb|EDX85477.1| signal peptide peptidase SppA, 67K type [Synechococcus sp. PCC
           7335]
          Length = 615

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 63/271 (23%), Positives = 122/271 (45%), Gaps = 12/271 (4%)

Query: 30  HVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGS 79
           +  ++   +A +  +G I            S+ L   +  +  DD   A+++ ++SPGGS
Sbjct: 320 NSSEDKDAIAVVYAQGNIIVGEGSVPGAITSEGLSATLRDMREDDDIKAVVLRVNSPGGS 379

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           A A E I   ++ + + KP++  + + AAS GY+I+     I+A+ T++ GSIGV     
Sbjct: 380 ATASEIIANEVRLLADEKPLVVSMGDYAASGGYMIAAPGAKILASPTTITGSIGVYGLLL 439

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
             +   ++ G++   VK++ +    +         +++ QD VD+ Y  F  LV+E R+I
Sbjct: 440 NFQEIANENGITWDDVKTAQLAGMGTVSRPKTASELKVQQDYVDTLYTRFTSLVAEGRDI 499

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
              +   ++ GR+WTG EA    L+D +GG  +           +  +   +  P    +
Sbjct: 500 SMARVGQVAQGRVWTGEEAINADLVDELGGLNDAIALAAQTAKIEEFK--VEEYPRIPSF 557

Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
              L +    + +   +P  K      L  +
Sbjct: 558 EEQLLDSLFGAEMITRLPWNKDPLTDQLLKL 588



 Score = 69.6 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 77/190 (40%), Gaps = 4/190 (2%)

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
            DD  + + ++     G     + I  A++  K     I           Y ++  ++ +
Sbjct: 100 EDDRISGIYLTGMPAEG-LATLKEIRAALKDFKTSGKPILAYSTGLKERDYYMASVADDL 158

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVNPKAVQMMQ 179
           + A   L+   G   +  ++   L K GV ++ V++   K+   PF+  + +P+  Q  +
Sbjct: 159 LLAPVGLLEINGFRAETQFLGNALKKYGVGVQVVRAGRYKSAVEPFTRSQSSPEEKQQTE 218

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
            +V S +  F+  V++ R +   +    +D   +    +A   GL+D +G   E+   L 
Sbjct: 219 VLVTSLWQDFLNTVTDEREVTPTQMQTYADEVGLIEPEQALASGLVDRLGFYTEMLSELK 278

Query: 239 ALGVDQSIRK 248
            L  +    +
Sbjct: 279 KLAGEADSSE 288


>gi|256839290|ref|ZP_05544800.1| signal peptide peptidase SppA, 67K type [Parabacteroides sp. D13]
 gi|256740209|gb|EEU53533.1| signal peptide peptidase SppA, 67K type [Parabacteroides sp. D13]
          Length = 582

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/259 (26%), Positives = 122/259 (47%), Gaps = 14/259 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLS 74
            +    N+P +A +   G+I+               +++ + + ++  +D   A++  ++
Sbjct: 289 KASPTKNAPEIAVLYAEGEIKAQTPGNFYDIEQSITEKMADELIKLKNNDDVKAVVFRVN 348

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGGSAY  E I+R + ++K  KPV+  +  +AAS GY ISCA+N I+A   +L GSIG+
Sbjct: 349 SPGGSAYISEQIWRQVVELKKVKPVVVSMGNVAASGGYYISCAANKIIAEPNTLTGSIGI 408

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
              +P       KL ++   VK++           +      ++Q  V+  Y  F+   +
Sbjct: 409 FGMFPNASGLFGKLALTTDIVKTNTFSDLGDLSRPMTESEKALIQGYVERGYQTFLSRCA 468

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           E R +  +    +  GR+WTG +AK+ GL+D +GG E    +   L  D     +   + 
Sbjct: 469 EGRGMTTEAVNAIGQGRVWTGEQAKERGLVDELGGIELAISTAAGLA-DLDQYSVTTVSG 527

Query: 255 PKNYWFCDLKNLSISSLLE 273
            KN+    L++      L 
Sbjct: 528 SKNFLDEFLESQLGEVKLS 546



 Score = 89.7 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 99/262 (37%), Gaps = 26/262 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPH---VARIAIRGQIEDS------------------ 50
            ++  L+++T+ Y +      D +P    V +I + G + D+                  
Sbjct: 15  IILTVLISMTIGYIATVGSTPDYTPKSNTVFKIKLDGTLADNPAENPFSALMGDKENMLS 74

Query: 51  -QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
            ++L+E I    ++D    + +        + + EAI R++   K     +    +    
Sbjct: 75  LKDLLETIRIAKQNDKIAGIYIESGLLSSGSASLEAIRRSLIDFKESGKFVVAYADNFTQ 134

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS- 168
             Y +   ++ +      ++   G+  Q  + K  +DK+G+ ++  K    K    PF  
Sbjct: 135 GNYFLCSVADKVFLNPQGILELTGLASQTLFYKGLMDKVGIEMQIFKVGTYKGAVEPFML 194

Query: 169 -EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA--EAKKVGLID 225
            +++    + +Q  + + +      ++ESR I  +     ++  ++     +  + G ID
Sbjct: 195 DKLSEANREQIQSYISTIWDNITEGIAESRGISVNDINHYANEGLFFADPVKTVECGFID 254

Query: 226 VVGGQEEVWQSLYALGVDQSIR 247
            +  + EV   +  L      +
Sbjct: 255 ELKYKPEVEAYVKELAGQNGKK 276


>gi|237708460|ref|ZP_04538941.1| protease IV [Bacteroides sp. 9_1_42FAA]
 gi|229457681|gb|EEO63402.1| protease IV [Bacteroides sp. 9_1_42FAA]
          Length = 593

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 76/278 (27%), Positives = 133/278 (47%), Gaps = 19/278 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVSLSSPGG 78
             + +   +A     G+I D+           Q++ + + ++  +D   A+++ ++SPGG
Sbjct: 298 PKDKSGNVIAVYYAYGEILDAPGSSTEDCIDVQKMCKGLRKLRDNDDVKAVVLRVNSPGG 357

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQ 137
           SAY  + I+R + ++K +KPVI  + + AAS GY ISCA++ I A  T+L GSIG+    
Sbjct: 358 SAYGSDQIWREVVRLKEKKPVIVSMGDYAASGGYYISCAADRIFADPTTLTGSIGIFGMM 417

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKA-----EPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           Y   K F + LG++   VK++ M        P     +N    ++MQ+ V+  Y  FV  
Sbjct: 418 YSGEKLFTETLGLNFDVVKTNKMADLGASLGPILTRPLNASEQELMQNYVNRGYKLFVSR 477

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
            +E R +  +    +++GR+WTGA AK +GL+D +GG ++   +       ++   I   
Sbjct: 478 CAEGRKMSTEAIEKVAEGRVWTGAMAKDLGLVDELGGIDKALNAAATQAGIENYSIIGY- 536

Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
            P K   F  L        +   I     +      A+
Sbjct: 537 -PEKENIFASLLGNQKKHYVNSEIKEYLGSYYNSFKAL 573



 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 100/261 (38%), Gaps = 23/261 (8%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQE 52
           + +L ++TL  +  S  +        +  +  +G +                       +
Sbjct: 22  FTILGIITLVSIVASSDTETVVKDNSIFVLDFKGSLSERVQENPLQQLLGEEFEAYGLDD 81

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++  I++   +D    + +  S       + E I  A+   K     I    +  A   Y
Sbjct: 82  ILASIKKAKDNDKIKGIYIQPSYLEAPYASLEEIRNALLDFKESGKFIVAYADQYAQKMY 141

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEV 170
            +S  ++ I+      +G  G   Q  + K  + KLG+ I+  +    K+   PF  +E+
Sbjct: 142 YLSSVADKIIINPQGSIGWHGAGMQPVFFKNLVSKLGLEIQVFRVGTYKSAVEPFIATEM 201

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--GAEAKKVGLIDVVG 228
           +P   + M + ++S +H  +  VS+SR+IP D     +D  +      E  + GL D + 
Sbjct: 202 SPANREQMTECLESVWHRILADVSDSRHIPTDTLNAYADRYMDFCQAEEYVQCGLADTLM 261

Query: 229 GQEEVWQSLYALGVDQSIRKI 249
            ++EV   L  L       K+
Sbjct: 262 YKDEVISYLKQLSGRDEDDKL 282


>gi|193215273|ref|YP_001996472.1| signal peptide peptidase SppA, 67K type [Chloroherpeton thalassium
           ATCC 35110]
 gi|193088750|gb|ACF14025.1| signal peptide peptidase SppA, 67K type [Chloroherpeton thalassium
           ATCC 35110]
          Length = 605

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 130/269 (48%), Gaps = 14/269 (5%)

Query: 33  DNSPHVARIAIRGQI------------EDSQELIERIERISRDDSATALIVSLSSPGGSA 80
           D    +A I + G I              +  L++ IE + +D+S  A+I+ + SPGGS 
Sbjct: 294 DGGEKIAVINLTGVIEGEMSSASSDGKGGTAALLQSIEAVGKDESIKAMILRVDSPGGSG 353

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
            A + I   +   + +KP++  +   AAS GY +S  +N IVA E ++ GSIGVL   PY
Sbjct: 354 LASDKILSELILAQKQKPLVVSMSGTAASGGYWVSLNANKIVAGENTVTGSIGVLAAKPY 413

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           +K   +K+G+    +         + F E++P+        +   Y  FV  V+E RN+ 
Sbjct: 414 IKELQEKIGLERNVLVRGKFADAFNFFDELSPETYAKFDRFIGDFYEEFVEKVAEGRNMT 473

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--KDWNPPKNY 258
            +    ++ GR+WTG  AK++GL+D +GG +   +   +L    S   +    +  PK +
Sbjct: 474 PEAVRKIAQGRVWTGKRAKEIGLVDELGGLQTAVEVAKSLAGIDSASMVTLVRYPRPKTF 533

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           W    ++ S++ +    +  +K+   + L
Sbjct: 534 WSTIWEDESLARVSAMFVAAIKKDLYREL 562



 Score = 86.2 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 115/282 (40%), Gaps = 21/282 (7%)

Query: 6   KKIKTRYVMLSLVTLTV-VYFSWSSHVEDNSPHVARIAIRGQIEDSQE------------ 52
           +KI    ++L  + + + VY   S  V      V  + ++G++ + +E            
Sbjct: 10  RKIFLTILVLVFILIGIGVYRVLSPSVAIPEQSVLMLDVQGELPEVREDEEFPLFAEAQP 69

Query: 53  -----LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
                L+  +++ S DD    ++V + S        + + +AI   +     I       
Sbjct: 70  LALQELLVTLKKASVDDRIDLIVVRIQSLSTQMAKLDELRQAIADYRKSGKEIWAFLSFP 129

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP- 166
             + YL++ A N I   + S++   G+  +  Y +  L+K+GV ++  K    K+   P 
Sbjct: 130 GDSEYLLASACNHIYLEKHSMMMLDGLKSERLYFRTPLEKMGVKVQVAKRENYKSAAEPL 189

Query: 167 -FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLI 224
                +   ++    ++D  Y  +V  V+ SR +        ++D    +  EA ++GL+
Sbjct: 190 LRDAPSAFDLEQRNALLDDFYESYVNAVAASRQMSRAAYERVINDIAFVSDKEASELGLV 249

Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           D V    ++ + L A    ++  K   +   + Y   DL++L
Sbjct: 250 DSVIFFRDLKRQLIAKYEVKASDKDDFFVSGETYRGVDLESL 291


>gi|298708810|emb|CBJ30769.1| signal peptide peptidase [Ectocarpus siliculosus]
          Length = 625

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 72/281 (25%), Positives = 127/281 (45%), Gaps = 16/281 (5%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIE---------------DSQELIERIERISRDDSATALI 70
           S          +VA +   G I                 S  L +R++ +  D S  A++
Sbjct: 297 SAKGAKNPAPKNVALVNANGAITRFADPGVGPGSTEQATSSALCKRLQEVIDDPSIGAVV 356

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + + SPGGSA A ++I  A+++V+   KPV+  + ++AAS GY+I+ A + IVA  T++ 
Sbjct: 357 LRVDSPGGSAVASDSIAAAVRRVRLAGKPVVCSMGDLAASGGYMIAAACDTIVAQPTTIT 416

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+     V+  L   G+ + S++ S      SP  E +P+   +M+  V   Y  F
Sbjct: 417 GSIGVIAAKLSVQRLLKAWGIQVDSIELSENHLAFSPLQEFSPQQRSLMEKRVGEIYEDF 476

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V  V+  RN+  D+ L ++ GR+WTG +A   GL+D +GG           G      ++
Sbjct: 477 VGGVAAGRNMSVDEVLKVAKGRVWTGRQALDRGLVDELGGLNIAIAIAKKAGGLPEDARV 536

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
            +           +        + ++   ++       +A+
Sbjct: 537 VEAERRSLVQAATVFISGGGDSVTESTGGVRSAIFALAYAI 577



 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 71/222 (31%), Gaps = 30/222 (13%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPG---GSAYAGEAIFRAIQKVKNRKPVI---- 100
            +++++++ +E  ++D+    ++   S      G     + +  A+ + +          
Sbjct: 1   METRDVVDALEMAAKDNKVRGVLGRFSYRSWGGGYLACVQEVRDAVTRFREAGSDASATA 60

Query: 101 --------------------TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                               T      A   Y ++ A   ++  +T  VG  G   Q  +
Sbjct: 61  GEGAEADGRQRKRFTIAVADTFGEGGPAVGEYFLASAFEKVLVQKTGYVGLTGSGGQKLF 120

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
            + FLDK G+  +       K+          +P   + M  ++ S        V+ SR 
Sbjct: 121 FRGFLDKYGIKPEVFAREEYKSAAESLVRKAYSPHEREAMTSLLTSMLDDVADGVAASRG 180

Query: 199 IP-YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
                    +          A    LID +  +++V   + A
Sbjct: 181 FKDRKDVYAIMHDCPLPATLALSANLIDGIMYEDDVESMVKA 222


>gi|117920409|ref|YP_869601.1| signal peptide peptidase SppA, 67K type [Shewanella sp. ANA-3]
 gi|117612741|gb|ABK48195.1| signal peptide peptidase SppA, 67K type [Shewanella sp. ANA-3]
          Length = 614

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 65/270 (24%), Positives = 120/270 (44%), Gaps = 14/270 (5%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                V  I   G I                E + +   D    AL++ + SPGGSA+A 
Sbjct: 322 VEQDSVGIIVASGTILNGSQPAGQIGGDSTAELLRKARFDKHIKALVLRVDSPGGSAFAS 381

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + +  +K   KPV+  +  +AAS GY IS +++ I A  T+L GSIG+       +
Sbjct: 382 EQIRQELLALKAAGKPVVVSMGSLAASGGYWISASADYIFATPTTLTGSIGIFGMITTFE 441

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L  LG+    V +S         + ++P+   ++Q  ++  Y  F+ LV++ R +  +
Sbjct: 442 DSLASLGIHTDGVSTSEWAGLSVTRT-LSPQIESVIQRHIERGYLDFISLVAKERKMTLE 500

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFC 261
           +   ++ GR+W+G +A ++GL+D +G  ++       L        ++ +        F 
Sbjct: 501 QVDSIAQGRVWSGKKALELGLVDELGDIDQAVAKAAKLADLSLFDTRVIEQELTPEQRFV 560

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
                S+S+ L  ++     T ++ + A W
Sbjct: 561 QQMFASVSAYLPASLS--HSTLLEQMLAQW 588



 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 90/277 (32%), Gaps = 36/277 (12%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------- 51
           ++K     +    + + ++    S  ++        + + G I D +             
Sbjct: 22  IRKFILNLIFFGFLAIILITIGSSEDIQVEENSALVLNLAGSIVDQKQQVDPIEAALKQG 81

Query: 52  ------------ELIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVKNRKP 98
                       ++I  I+  + D+  + +++ L+          ++I  A+ + K    
Sbjct: 82  NNGSSDGEILLSDIIYVIDNATHDNRISTIVLDLAELKRAGISKLQSIGDALNRFKESGK 141

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            +  +        Y ++  ++ I       V   G+     Y K  L+KL +     +  
Sbjct: 142 KVVAIGNYYEQNQYFLASFADTIYLNPQGSVSLDGLSMYNQYFKSALEKLKIKAHIFRVG 201

Query: 159 PMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLS 208
             K+   P+   +++  A +    ++   +  + + V+E+R I  +            L 
Sbjct: 202 TFKSAVEPYMRDDMSDAAREASSALLADVWQSYTQTVAENRQIDANTLVLDSASYLAQLD 261

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
                +   A  +  +D +   EE  + +      + 
Sbjct: 262 KAEGDSATMAINMKWVDTLATDEEFRKVMLDSVGKEK 298


>gi|298374871|ref|ZP_06984829.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 3_1_19]
 gi|298269239|gb|EFI10894.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 3_1_19]
          Length = 582

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/259 (26%), Positives = 122/259 (47%), Gaps = 14/259 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLS 74
            +    N+P +A +   G+I+               +++ + + ++  +D   A++  ++
Sbjct: 289 KASPTKNAPEIAVLYAEGEIKAQTPGNFYDIEQSITEKMADELIKLKNNDDVKAVVFRVN 348

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGGSAY  E I+R + ++K  KPV+  +  +AAS GY ISCA+N I+A   +L GSIG+
Sbjct: 349 SPGGSAYISEQIWRQVVELKKVKPVVVSMGNVAASGGYYISCAANKIIAEPNTLTGSIGI 408

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
              +P       KL ++   VK++           +      ++Q  V+  Y  F+   +
Sbjct: 409 FGMFPNASGLFGKLALTTDIVKTNTFSDLGDLSRPMTESEKALIQGYVERGYQTFLSRCA 468

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           E R +  +    +  GR+WTG +AK+ GL+D +GG E    +   L  D     +   + 
Sbjct: 469 EGRGMTTEAVNAIGQGRVWTGEQAKERGLVDELGGIELAISTAAGLA-DLDQYSVTTVSG 527

Query: 255 PKNYWFCDLKNLSISSLLE 273
            KN+    L++      L 
Sbjct: 528 SKNFLDEFLESQLGEVKLS 546



 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 99/262 (37%), Gaps = 26/262 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPH---VARIAIRGQIEDS------------------ 50
            ++  L+++T+ Y +      D +P    V +I + G + D+                  
Sbjct: 15  IIITVLISMTIGYIATVGSTPDYTPKSNTVFKIKLDGTLADNPTENPFSALMGDKENMLS 74

Query: 51  -QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
            ++L+E I    ++D    + +        + + EAI R++   K     +    +    
Sbjct: 75  LKDLLETIRIAKQNDKIAGIYIESGLLSSGSASLEAIRRSLIDFKESGKFVVAYADNFTQ 134

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS- 168
             Y +   ++ +      ++   G+  Q  + K  +DK+G+ ++  K    K    PF  
Sbjct: 135 GNYFLCSVADKVFLNPQGILELTGLASQTLFYKGLMDKVGIEMQIFKVGTYKGAVEPFML 194

Query: 169 -EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA--EAKKVGLID 225
            +++    + +Q  + + +      ++ESR I  +     ++  ++     +  + G ID
Sbjct: 195 DKLSEANREQIQSYISTIWDNIAEGIAESRGISVNDINHYANEGLFFADPVKTVECGFID 254

Query: 226 VVGGQEEVWQSLYALGVDQSIR 247
            +  + EV   +  L      +
Sbjct: 255 ELKYKPEVEAYVKELAGQNGEK 276


>gi|50085707|ref|YP_047217.1| putative protease; putative signal peptide peptidase sppA
           [Acinetobacter sp. ADP1]
 gi|11345441|gb|AAG34712.1|AF320001_5 putative protease [Acinetobacter sp. BD413]
 gi|49531683|emb|CAG69395.1| putative protease; putative signal peptide peptidase sppA
           [Acinetobacter sp. ADP1]
          Length = 338

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 65/261 (24%), Positives = 121/261 (46%), Gaps = 15/261 (5%)

Query: 37  HVARIAIRGQI------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
           H+A + I G I       +S++  + +ER     ++ A+ ++++SPGGS    + I++ I
Sbjct: 81  HLAVVNIIGTIDSSNQSVNSEDTNKALERAFEAKNSKAVALNINSPGGSPVQSDEIWQEI 140

Query: 91  QKV---KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
           + +      K V   + +M AS  Y I+ A++ I+   +SLVGSIGV+     +     K
Sbjct: 141 RYLKKQHPDKKVYAVIGDMGASGAYYIASAADEIIVNPSSLVGSIGVIMPNYGITGLAQK 200

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLV 206
           LG+  +++ S   K   S    VNP   + +Q V+D+ +  F+  V E R          
Sbjct: 201 LGIEDRTLTSGSNKDILSMTKPVNPAQREHIQSVLDNVHAHFINAVKEGRGTRLKSNDPA 260

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW--FCDLK 264
           +  G  WTG +A ++G+ D  G  + + + L    V+  +    + +P ++         
Sbjct: 261 IFSGLFWTGEQAIQLGVADRTGNLDTLMRELK---VENKVNYTIERSPFESILGKMGSEL 317

Query: 265 NLSISSLLEDTIPLMKQTKVQ 285
              IS  +   +   +Q K+Q
Sbjct: 318 GQGISQSVSQQLKTEQQAKLQ 338


>gi|209695598|ref|YP_002263527.1| protease IV (endopeptidase IV) [Aliivibrio salmonicida LFI1238]
 gi|208009550|emb|CAQ79842.1| protease IV (endopeptidase IV) [Aliivibrio salmonicida LFI1238]
          Length = 617

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 136/284 (47%), Gaps = 14/284 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           ++           +  ++  +A +   G I D                + +   DD+  A
Sbjct: 308 ISYYDYLPQVHPSIIPDAKDIAVVVASGAIMDGTQRQGTVGGDSTAALLRQARDDDNVKA 367

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   +  ++   KPV+  +  +AAS GY IS +++ I+A  T+
Sbjct: 368 VVLRVDSPGGSAFASEIIRNEVDALQEAGKPVVISMSSVAASGGYWISASADKIIAQPTT 427

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           + GSIG+       +  L+K+G+    + +SP          ++    Q+MQ  ++  Y+
Sbjct: 428 ITGSIGIFGILTTFEKGLEKMGIHSDGISTSPF-NGIGLTRPLDKDVAQVMQLGIEHGYY 486

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F++LVS+ R++  D    ++ GR+WTG +A + GLID +G  ++  Q+   L      +
Sbjct: 487 RFIKLVSDHRDMSLDAVDNVAQGRVWTGKDALEHGLIDQLGDFDDAVQAAAELANMDAYN 546

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +  +K+   P   +  +L ++S++  ++  +  +    +Q   +
Sbjct: 547 LFWVKEPLTPMEQFLEEL-SMSLNVSVKAELFSLAPEALQPAIS 589



 Score = 89.7 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 93/292 (31%), Gaps = 38/292 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSS--HVEDNSPHVARIAIRGQIEDSQ------- 51
           + F  + +   + +  +  +   + S       +        + + G I +         
Sbjct: 19  LSFTRQLVLNLFFLAFIGVIAFTFLSTDDIQQDQTVEKKALILDLSGPIVEESKFREPLE 78

Query: 52  ------------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQK 92
                             ++++ I   ++DD+ + L++        S      I +AI  
Sbjct: 79  RVTADLLGSQRSQENVLFDIVDTIRYAAKDDNVSGLVLHLKEMNETSLTKLRYIAKAINT 138

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            K     +  + +    + Y ++  ++ I  A    V   G      Y K  L+KL VS 
Sbjct: 139 FKASGKPVYAIGDYYNQSQYYLASYADKIFMAPDGAVLLRGYGAYTLYYKDLLEKLNVST 198

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203
              +    K+   P+  ++++  A       +   +  ++  VS +R I           
Sbjct: 199 HVFRVGTYKSAVEPYLRNDMSDAAKASTSAWLTQLWDAYLGDVSTNRQIDAKTLTMPMDQ 258

Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
               L+           ++GL+D +  ++EV + L            K  + 
Sbjct: 259 FIAKLTALNGDLSQMTVELGLVDKLATRQEVRKDLITEFGSNGYDSFKQISY 310


>gi|150010501|ref|YP_001305244.1| protease IV [Parabacteroides distasonis ATCC 8503]
 gi|149938925|gb|ABR45622.1| protease IV [Parabacteroides distasonis ATCC 8503]
          Length = 588

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/259 (26%), Positives = 122/259 (47%), Gaps = 14/259 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLS 74
            +    N+P +A +   G+I+               +++ + + ++  +D   A++  ++
Sbjct: 295 KASPSKNAPEIAVLYAEGEIKAQTPGNFYDIEQSITEKMADELIKLKNNDDVKAVVFRVN 354

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGGSAY  E I+R + ++K  KPV+  +  +AAS GY ISCA+N I+A   +L GSIG+
Sbjct: 355 SPGGSAYISEQIWRQVVELKKVKPVVVSMGNVAASGGYYISCAANKIIAEPNTLTGSIGI 414

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
              +P       KL ++   VK++           +      ++Q  V+  Y  F+   +
Sbjct: 415 FGMFPNASGLFGKLALTTDIVKTNTFSDLGDLSRPMTESEKALIQGYVERGYQTFLSRCA 474

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           E R +  +    +  GR+WTG +AK+ GL+D +GG E    +   L  D     +   + 
Sbjct: 475 EGRGMTTEAVNAIGQGRVWTGEQAKERGLVDELGGIELAISTAAGLA-DLDQYSVTTVSG 533

Query: 255 PKNYWFCDLKNLSISSLLE 273
            KN+    L++      L 
Sbjct: 534 SKNFLDEFLESQLGEVKLS 552



 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 99/262 (37%), Gaps = 26/262 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPH---VARIAIRGQIEDS------------------ 50
            ++  L+++T+ Y +      D +P    V +I + G + D+                  
Sbjct: 21  IILTVLISMTIGYIATVGSTPDYTPKSNTVFKIKLDGTLADNPAENPFSALMGDKENMLS 80

Query: 51  -QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
            ++L+E I    ++D    + +        + + EAI R++   K     +    +    
Sbjct: 81  LKDLLETIRIAKQNDKIAGIYIESGLLSSGSASLEAIRRSLIDFKESGKFVVAYADNFTQ 140

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS- 168
             Y +   ++ +      ++   G+  Q  + K  +DK+G+ ++  K    K    PF  
Sbjct: 141 GNYFLCSVADKVFLNPQGILELTGLASQTLFYKGLMDKVGIEMQIFKVGTYKGAVEPFML 200

Query: 169 -EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA--EAKKVGLID 225
            +++    + +Q  + + +      ++ESR I  +     ++  ++     +  + G ID
Sbjct: 201 DKLSEANREQIQSYISTIWDNIAEGIAESRGISVNDINHYANEGLFFADPVKTVECGFID 260

Query: 226 VVGGQEEVWQSLYALGVDQSIR 247
            +  + EV   +  L      +
Sbjct: 261 ELKYKPEVEAYVKELAGQNGEK 282


>gi|332707294|ref|ZP_08427347.1| serine peptidase, MEROPS family S49 [Lyngbya majuscula 3L]
 gi|332354028|gb|EGJ33515.1| serine peptidase, MEROPS family S49 [Lyngbya majuscula 3L]
          Length = 274

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 73/276 (26%), Positives = 131/276 (47%), Gaps = 10/276 (3%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                   +   +ARI I G I     + ++E ++ +        L++ + SPGG+    
Sbjct: 1   MPWPFKRKSLKQIARIEITGAIAGGTRKRVLEALKTVEE-KKFPVLLLRIDSPGGTVGDS 59

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           + I+ A+ +++ +  ++     ++AS G  I   +  IVA   ++ GSIGV+ +   ++ 
Sbjct: 60  QEIYSALVRLREKVKIVASFGNISASGGVYIGMGAEHIVANPGTITGSIGVILRGNNIER 119

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            LDK+GVS K +KS P K   +   E+      ++Q+++D+SY  FV+ V++SRN+  D 
Sbjct: 120 LLDKIGVSFKVIKSGPYKDILAFDRELTEPEKTILQELIDTSYQQFVQTVAQSRNLDVDV 179

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCD 262
               +DGRI+TG +A  +G++D +G +E+       L   D    K      PK      
Sbjct: 180 VKSFADGRIFTGEQAHNLGVVDRLGTEEDARCWAAELVGLDPEKTKSFTIEEPKPLLSRL 239

Query: 263 LKNLSISSLLE-----DTIPLMKQTKVQGLWAVWNP 293
           L    I +  +     D +     T  Q LW ++ P
Sbjct: 240 LPGNRIRNRSQISVGIDWLEFELSTSGQPLW-LYRP 274


>gi|297622896|ref|YP_003704330.1| peptidase S49 [Truepera radiovictrix DSM 17093]
 gi|297164076|gb|ADI13787.1| peptidase S49 [Truepera radiovictrix DSM 17093]
          Length = 546

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/288 (21%), Positives = 113/288 (39%), Gaps = 27/288 (9%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIE-------------------DSQELIERIERISRDDS 65
           F  +      S  VA I + G I                     ++ L+        DD 
Sbjct: 261 FFPAPLPPLRSRKVAVITLEGAIVTGRSRRLPLPLPLVGGKQAGAETLLRAFRAAEADDG 320

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
             A++  ++S GGSA A + I+R + +++ +KPV+  + E+AAS G+ +   ++ ++A  
Sbjct: 321 VAAVVFYVNSGGGSALASDLIWREVVRLRRKKPVVAVMGEVAASGGFYVLTHADHVIAGA 380

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
           T+L GSIGVL     ++ F  + G   ++++        SP          +    +   
Sbjct: 381 TTLTGSIGVLTGKFVLEEFNRRYGFHPEAIRRGRFALAMSPAHPFTDDERALQARAIAEV 440

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  F   V+  R +P  +   L+ GR+WTG +A+  GL+D +G           +   + 
Sbjct: 441 YARFTERVAAGRKLPLGRVEELAGGRVWTGRDAQARGLVDELGDVALGVARAREMAGLRE 500

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
              + +   P       L         E   P  +   +     +W P
Sbjct: 501 DAPVWNVPAPAKL---VLPQPDKPGAWESLYPWREDRAL-----LWAP 540



 Score = 70.0 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 79/189 (41%), Gaps = 2/189 (1%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
              +EL  ++ER+++      ++  +          EA+   + +++      +      
Sbjct: 60  MSLEELTAQLERLAQAPWLKGVLFRVEGLTVGGATAEALRALVTRLRQAGKRTSCYLTRL 119

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP- 166
               Y ++ A++ +V  E++ +   G+  +  +++  L + G++ + +     K      
Sbjct: 120 DLLSYFVASAADEVVLPESAELSVFGLALETTFMRDALARYGIAFEKLALRDYKTAGDTL 179

Query: 167 -FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
              E++P   +    +++S     V  ++ SR +  D      D  + + + A ++G+ID
Sbjct: 180 ARQEMSPAQREQYGRLLESLEATLVEAIASSRGVAADTVRAWFDEGVTSASRALELGMID 239

Query: 226 VVGGQEEVW 234
            V  ++E+ 
Sbjct: 240 RVAYEDELI 248


>gi|152990177|ref|YP_001355899.1| protease IV [Nitratiruptor sp. SB155-2]
 gi|151422038|dbj|BAF69542.1| protease IV [Nitratiruptor sp. SB155-2]
          Length = 296

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 76/276 (27%), Positives = 133/276 (48%), Gaps = 8/276 (2%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K   ++     + ++            P++  I + G I D++ ++++IE  
Sbjct: 23  LDFLQKYFKGILLL----LVLILLLGAFQKTTLQKPNLMEIRLDGPIIDAKNILKKIELA 78

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  +   ++  +SSPGG+      I RAI+++  +KPVIT      AS  Y  S  S  
Sbjct: 79  EQ-PNIKGILFVVSSPGGAVAPSIEISRAIKRISAKKPVITYAAGTLASGSYYASIWSKK 137

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           I+A   S VGSIGV+ + P +K  LDKLGV+ + VK+   K   +PF        + +Q 
Sbjct: 138 IIANPGSAVGSIGVILEAPNLKGLLDKLGVAPQVVKAGKYKEAGTPFRPWKTYEKEELQK 197

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           V++ +Y  FV  V+++R +        ++  I+T  +A+KVGLID VG      + L  +
Sbjct: 198 VINDTYDMFVHDVAKARRLDPKNKDQFAEAHIFTARQAQKVGLIDEVGDYFSAKKELEKI 257

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
              +     K+    K   F D      S+++ D +
Sbjct: 258 SGVRKAIWAKEDPWEK---FMDQVAQKSSTMIVDML 290


>gi|315927751|gb|EFV07078.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. jejuni DFVF1099]
          Length = 298

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/279 (23%), Positives = 132/279 (47%), Gaps = 2/279 (0%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           + + +K I T +    L+ + +     S++   N  ++ RI ++G+I DS  ++E+I   
Sbjct: 11  LGYGIKFINTYFKTFVLLLIVIWILIPSANSSSNLANLERIDLKGEIFDSSAVLEKIINA 70

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
             D +   ++  + SPGG+      +  AI+ +K +KPV+       AS  YL    +N 
Sbjct: 71  KNDSNIKGVLFVIDSPGGAFAPSMELALAIKDLKIKKPVLVYASGTMASGSYLAGVGANK 130

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           I+A   S +GSIGV+ Q   +    +KLG+  +++++   K+  +     N      +Q 
Sbjct: 131 ILANPASFIGSIGVIMQGADLSGLANKLGIKEQTIQAGEFKSAGTFARAWNENERNFLQG 190

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           ++D SY  F   V++ R +  +K    ++ R++  A+AK++GLID +   E   + L  L
Sbjct: 191 LIDQSYDLFTGFVAKERALDLNKKDQWANARVFLAAKAKELGLIDELSNYENAKKELEKL 250

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
               +   +       + +   L+  + S + +  I + 
Sbjct: 251 ANVSN--PVWKEEDKIDKFLNRLEGQTSSLISKSLIEIA 287


>gi|302828750|ref|XP_002945942.1| signal peptide peptidase [Volvox carteri f. nagariensis]
 gi|300268757|gb|EFJ52937.1| signal peptide peptidase [Volvox carteri f. nagariensis]
          Length = 683

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 20/247 (8%)

Query: 37  HVARIAIRGQIE--------------DSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
            VA +   G I               D+ +L  ++  +  D + TA++V ++SPGGSA A
Sbjct: 336 KVAVVTASGPIVQGPVPPGQSQGQVIDATKLCRQLAALLEDSTVTAVVVRVNSPGGSALA 395

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            +++   + +++    V+             ++ A++ IVA   SL GSIGVLF   YV 
Sbjct: 396 SDSLHHELVRLRAAGKVVVVSGGY------YLAAAADHIVAQPGSLTGSIGVLFGKVYVG 449

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L++ G+  + V         SPF+   P     M+ ++D  Y  F+  VS  R  P +
Sbjct: 450 KTLEEAGIRSEGVTVGRNADALSPFTGFTPDQEAQMEALIDHVYQDFLEKVSRGRGRPVE 509

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           +   L+ G+++TG +A +VGL+D +GG E   Q    L       ++  + P +      
Sbjct: 510 EVRQLAKGKVYTGRQAHEVGLVDELGGLETAVQRAKQLAGLPEDAEVVSYPPRRIPLLLQ 569

Query: 263 LKNLSIS 269
           L   S +
Sbjct: 570 LLRRSGA 576


>gi|269962123|ref|ZP_06176477.1| Protease IV [Vibrio harveyi 1DA3]
 gi|269833207|gb|EEZ87312.1| Protease IV [Vibrio harveyi 1DA3]
          Length = 616

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/274 (24%), Positives = 126/274 (45%), Gaps = 13/274 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           +       +   ++  +   +A +   G I D            +   + +   DD   A
Sbjct: 307 IGYYDYLATMRPNLAPSENDIAVVVASGTIMDGQQPRGTVGGDTVASLLRQARNDDKVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   ++ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEVEALKEAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +   +KLG+S   V +SP  +     + ++  A +  Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGFNKLGISTDGVGTSPF-SGDGITTGLSTGASEAFQLGIEHGYK 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245
            F+ LV  +R++  D+   ++ GR+WTG +A   GL+D +G  ++  +    L   +   
Sbjct: 486 RFISLVGSNRDMSLDEVDKVAQGRVWTGQDALSFGLVDQMGDFDDAVKLAAKLAEVENYE 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
           I  +++   P   +  +  N    SL  D    +
Sbjct: 546 IYWVEEPLSPTEQFIQEFMNQVKVSLGIDATSFL 579



 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 93/284 (32%), Gaps = 37/284 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + FV   +     ++ +      + ++  S    +      + + G I + +        
Sbjct: 19  ITFVRLALMNLIFLVMIAVFYFAFTYTGESQPTVDKESALVMNLSGPIVEQRRYVNPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93
                            ++++ I     D   + L+++L   P  +      I +A+ + 
Sbjct: 79  VAGSILGNEIPKENVLFDIVDTIRYAKDDPKVSGLVLALRDMPETNLTKLRYIAKALNEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ +  A    V   G      Y K  L+KL VS  
Sbjct: 139 KTSGKPVYAVGDFYNQSQYYLASYADKVFLAPDGGVLIKGYSSYSMYYKTLLEKLDVSTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF   +++  A +     +   +  FV  V+ +R I         D  
Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESATRWITQLWSAFVDDVATNRKIDAKVLNPTMDEL 258

Query: 212 I--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           +             A K+GL+D +  +++V +            
Sbjct: 259 LAEMKSVDGDLAQLALKMGLVDELATRQDVRKLFAKEFGSDGKD 302


>gi|160871776|ref|ZP_02061908.1| protease [Rickettsiella grylli]
 gi|160872532|ref|ZP_02062664.1| protease [Rickettsiella grylli]
 gi|159120575|gb|EDP45913.1| protease [Rickettsiella grylli]
 gi|159121331|gb|EDP46669.1| protease [Rickettsiella grylli]
          Length = 319

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 59/249 (23%), Positives = 102/249 (40%), Gaps = 14/249 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIED-----SQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                   H+  + I+G I D     +  +IE ++    D +   +I+ ++SPGGS    
Sbjct: 60  PTTSKAKAHIGLVDIKGIINDNSAANADNVIEGLQNAFEDKNTRTVILRINSPGGSPVQA 119

Query: 84  EAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
             I+  I+ +     +  +     ++ ASA Y I+ AS+ I A  +SLVGSIGVL     
Sbjct: 120 AQIYHEIRYLRHQYPKTKLYAVCDDLCASAAYYIASASDRIYANPSSLVGSIGVLMDGFG 179

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               + K+GV  + + +   K    PFS       ++ + ++ + +  F+  V + R   
Sbjct: 180 FVETMKKVGVERRLLTAGDHKGFLDPFSPEKLDEKRIAERMLANVHQQFIHAVKQGRGNR 239

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 L  G  WTG EA  +GLID  G    + + L         + I D+        
Sbjct: 240 LKNNPELFSGLAWTGEEALPLGLIDGFGDLNSLSRELIK------NKNIVDYTVKPGLLQ 293

Query: 261 CDLKNLSIS 269
                +  +
Sbjct: 294 QLSDRIGAA 302


>gi|262373137|ref|ZP_06066416.1| signal peptide peptidase SppA, 36K type [Acinetobacter junii SH205]
 gi|262313162|gb|EEY94247.1| signal peptide peptidase SppA, 36K type [Acinetobacter junii SH205]
          Length = 345

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 69/302 (22%), Positives = 132/302 (43%), Gaps = 27/302 (8%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN--SPHVARIAIRGQI--------EDSQEL 53
             K +   Y+++ L+ ++    + +     +  S H+A + I G I         +S++ 
Sbjct: 51  FFKCLGFAYLLIVLIAMSKSCSTTTEKATTSISSDHLAVVDIIGTIDSSSSQSAVNSEDT 110

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASA 110
            + ++R      + A+ ++++SPGGS    + I++ I+ +K +   K V   + +M AS 
Sbjct: 111 NKALKRAFEASGSKAIALNINSPGGSPVQSDEIWQEIRYLKKQYPAKKVYAVIGDMGASG 170

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
            Y I+ A++ I+   +SLVGSIGV+     +     KLG+  +++ S   K   S    +
Sbjct: 171 AYYIASAADEIIVNPSSLVGSIGVIMPNYGLSGLTQKLGIEDRTLTSGNNKDILSMTKPI 230

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGG 229
           NP     +Q V+D+ +  F+  V E R          +  G  W+G +A  +G+ D  G 
Sbjct: 231 NPTQQAHVQSVLDNVHSHFINAVKEGRGKRLKSNDPAIFSGLFWSGEQAIALGVADRSGS 290

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL------SISSLLEDTIPLMKQTK 283
              + + L        + +  D+    N     L  +       ISS L   +   +  K
Sbjct: 291 LTTLMRDL-------KVEQKVDYTVQHNPLESILGRMGTKIGEGISSSLATQLDTQQNAK 343

Query: 284 VQ 285
           +Q
Sbjct: 344 LQ 345


>gi|226227952|ref|YP_002762058.1| protease IV [Gemmatimonas aurantiaca T-27]
 gi|226091143|dbj|BAH39588.1| protease IV [Gemmatimonas aurantiaca T-27]
          Length = 638

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/274 (25%), Positives = 127/274 (46%), Gaps = 11/274 (4%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLS 74
               ++ +   S  VA +  +G I D +          L   + ++  D    +L++ ++
Sbjct: 329 LAMSTARMPSASQVVAVVYAQGDIVDGEGAEGQIGGEALSRELRKVRNDAKVKSLVLRVN 388

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGGS  A E I R +  +  +KPV+  +  +AAS GY IS AS  I A   ++ GSIGV
Sbjct: 389 SPGGSVIASERIQRELALINAKKPVVVSMGSLAASGGYWISTASRQIFAEPNTITGSIGV 448

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
               P VK   ++ GV+  +VK+       +         + ++Q   D+ Y  F+  V+
Sbjct: 449 FAIVPNVKGLANRHGVTFDTVKTGRYADILTLSRPRTEAELAVLQRGTDAVYDAFIARVA 508

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           +SR +P D    +++GR+W+GA+A ++GL+D +GG +   ++   L        ++++  
Sbjct: 509 QSRRLPVDSVRAIAEGRVWSGAQALRLGLVDSLGGLDAALRTAARLARITGDYDVREYPR 568

Query: 255 PKNY--WFCDLKNLSISSLLEDTIPLMKQTKVQG 286
            K     F +    S S +       +     QG
Sbjct: 569 VKTPTERFTEFFEGSPSPVAARVSKAVTGLSTQG 602



 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 86/266 (32%), Gaps = 31/266 (11%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSP-HVARIAIRGQIEDSQELIE----------- 55
           I    V+L ++ +     + +    +  P  +  I +   + D     E           
Sbjct: 19  IAVGVVLLIVIAVGFAASAGTRTAVEVRPGSILVIDLEQPLADQAARSESRGLFDDALTT 78

Query: 56  ------------RIERISRDDSATALIVS----LSSPGGSAYAGEAIFRAIQKVKNRKPV 99
                        I   + DD    +++              A   +  A++  K  K  
Sbjct: 79  GVSPLPLRSATVAIRAAADDDRIGGILLRGTVLSDGVSSGYAALREMRAALEDFKASKKP 138

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
           +           Y ++ A++ I       +   G+  +  ++    +K G+ ++  +   
Sbjct: 139 VLAYLVTPDVRTYYVASAADSITLDPFGSLLFPGMASEQVFLSGLFEKYGIGVQVSRVGR 198

Query: 160 MKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
            KA   PF+  +++P+    +   +   +    R V++SR +             I   +
Sbjct: 199 FKAAVEPFTRSDMSPENRLQVASYLGDMWAEVKRGVADSRQVDTVALQLQADTHGILLPS 258

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGV 242
           +A+   L+D VG  + V   L  +  
Sbjct: 259 DAQDAKLVDRVGYFDTVLDDLQRIVN 284


>gi|145632931|ref|ZP_01788664.1| protease IV [Haemophilus influenzae 3655]
 gi|144986587|gb|EDJ93153.1| protease IV [Haemophilus influenzae 3655]
          Length = 615

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 69/256 (26%), Positives = 126/256 (49%), Gaps = 14/256 (5%)

Query: 36  PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             +A + + G I D +          +   + +   D+S  A+I+ ++SPGGSA+A E I
Sbjct: 322 NKIAVVNVEGTIIDGESDEENAGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEII 381

Query: 87  FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
            +  + ++   KPVI  +  MAAS GY IS  ++ I+A   ++ GSIG+   +P  +  +
Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFTMFPTFENSI 441

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV    V ++ +    + FS +      + Q  ++  Y  F+ +VS+ R +   +  
Sbjct: 442 KKIGVHADGVSTTELANTSA-FSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKIQVD 500

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L+ G++W G++A + GL+D +G   E       L   +    ++D++     WF D   
Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 557

Query: 266 LSISSLLEDTIPLMKQ 281
             IS+LL DT    ++
Sbjct: 558 SLISTLLRDTKKGAQE 573



 Score = 82.7 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 109/287 (37%), Gaps = 44/287 (15%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52
            ++ +    V L  V L V   S+SS  + +    S     + + G + D+++       
Sbjct: 14  FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTALTSEGALLLNLDGYLADNRDETLRWQD 73

Query: 53  ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93
                             ++  I++   D     L++ L+   G    A + I  AI   
Sbjct: 74  ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHF 133

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K+    +    +  +   Y ++  ++ I       V   G+  +  Y K  LDKL V+  
Sbjct: 134 KDAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF  ++++ +A   MQ  +   ++ +V  VSE+RNI  D+   L + +
Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDRI--LPNAK 251

Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            +              A++ GL+  V  + ++ +   AL    S  K
Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKKFTALFGKGSDGK 298


>gi|86605621|ref|YP_474384.1| signal peptide peptidase SppA, 36K type [Synechococcus sp.
           JA-3-3Ab]
 gi|86554163|gb|ABC99121.1| signal peptide peptidase SppA, 36K type [Synechococcus sp.
           JA-3-3Ab]
          Length = 268

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 124/241 (51%), Gaps = 5/241 (2%)

Query: 37  HVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
            + RI + G I+    + +++ ++ +       A+++ + SPGG+    + I+ A+ +++
Sbjct: 13  QIGRIEVTGVIDGRTRERVLKALQEVEE-RQIPAVVLRIDSPGGTVADSQEIYNALSRLR 71

Query: 95  NRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            RK   ++     +AAS G  I+  +  IV+   ++ GSIGV+ +   ++  LDK+G+S 
Sbjct: 72  ERKGTRIVASFGNIAASGGVYIAMGAEKIVSNPGTITGSIGVIIRGNNLERLLDKIGISF 131

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
           K +KS P K   S   E+ P+   ++Q+++D +Y  FV+ V+ +R +  +     +DGRI
Sbjct: 132 KVIKSGPYKDILSFDRELTPEERNILQELIDITYGQFVQTVAAARRLSVNVVKTFADGRI 191

Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
           ++G +A  +G++D +G +E+       L       K  D  P +  W   L      + L
Sbjct: 192 FSGEQALHLGVVDRLGTEEDARLWAAELSGLPPDAKFCDLLPRRRGWARLLPAAEALARL 251

Query: 273 E 273
           +
Sbjct: 252 Q 252


>gi|269965994|ref|ZP_06180086.1| Protease IV [Vibrio alginolyticus 40B]
 gi|269829390|gb|EEZ83632.1| Protease IV [Vibrio alginolyticus 40B]
          Length = 616

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 66/274 (24%), Positives = 124/274 (45%), Gaps = 13/274 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           +       +           +A +   G I D            +   + +   D+   A
Sbjct: 307 IGYYDYLATIRPDYTLPQHDIAVVLASGAIMDGQQPRGTVGGDTVASLLRQARNDEKVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   ++ + +  KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEVEALKQAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +    KLG++   V +SP+ +     + ++  A Q+ Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGFSKLGINTDGVGTSPL-SGDGITTGLSEGASQVFQLGIEHGYK 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-- 245
            F+ LV E+R++  ++   ++ GR+WTG +A   GL+D +G  ++  +    L       
Sbjct: 486 RFISLVGENRDMSLEEVDKVAQGRVWTGQDALSFGLVDQMGDFDDAVELAAKLANVTDYG 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
           I  +++   P   +  +       SL  D   L+
Sbjct: 546 IYWVEEPLSPTELFLQEFMKQVKVSLGIDATSLL 579



 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 91/284 (32%), Gaps = 37/284 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + F+   +     +L +      + ++              + + G I + +        
Sbjct: 19  ITFIRLALANLIFLLMIAVFYFAFTYTGDGQPVVEKESALVMNLSGPIVEQRRYVNPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93
                            ++++ I     D   + L+++L   P  +      I +A+ + 
Sbjct: 79  FAGSLLGNELPKENVLFDIVDTIRYAKDDPKVSGLVLALRDMPETNLTKLRYIAKALNEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ +  A    V   G      Y K  L+KL VS  
Sbjct: 139 KASGKPVYAVGDFYNQSQYYLASYADKVYLAPDGGVLIKGYSAYSMYYKTLLEKLDVSTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF   +++  A +     V   +  FV  V+ +RNI         D  
Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESATRWVTQLWSAFVDDVTTNRNIDAKVLNPTMDEL 258

Query: 212 I--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           I             A K+GL+D +  ++++              
Sbjct: 259 INEMKSVNGDIAQLAVKLGLVDELATRQDIRTLFAKQFGSDGKD 302


>gi|327394084|dbj|BAK11506.1| protease IV SppA [Pantoea ananatis AJ13355]
          Length = 624

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 135/285 (47%), Gaps = 22/285 (7%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATAL 69
           ++++  ++          ++A I   G I D  E            +I     D    A+
Sbjct: 315 SVSIYDYNVKPDATQQKGNIAVIMASGAIMDGDETPGNVGGDTTAAQIRDARLDPKIKAI 374

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           I+ ++SPGGS  A EAI   +   K   KP++  +  MAAS GY IS  ++ I+A+ ++L
Sbjct: 375 ILRVNSPGGSVTASEAIRAELAAAKAAGKPIVVSMGGMAASGGYWISTPASYIIASPSTL 434

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIG+      ++  L  +GV    V +SP+    +    + P+  Q+MQ  +++ YH 
Sbjct: 435 TGSIGIFGVINTLENSLASIGVHTDGVATSPLADV-ASTKALPPEVQQLMQLTIENGYHN 493

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           FV LV+ SR+   ++   ++ G +WTG++AK  GL+D +G  ++  +    L      + 
Sbjct: 494 FVGLVAASRHKTPEQIDAIAQGHVWTGSDAKANGLVDALGDFDDAVKKAAELAKVS--QP 551

Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
             DW   ++  F DL    +++ ++  +P         + A W P
Sbjct: 552 QLDW-YQEDPGFIDLMLNQMNASVQAVLP-------DPIKA-WLP 587



 Score = 82.7 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 98/286 (34%), Gaps = 41/286 (14%)

Query: 1   MEFVLK---KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------ 51
           + F+ +    +   ++++  V + +      SH         ++ + G + D        
Sbjct: 23  LNFIRELILNLFLIFLIVVCVGIWLQVSGSGSHSAPIQQGALKVDLTGVLVDKPSVSNRL 82

Query: 52  ---------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRA 89
                                ++++ I +   D +   +++ L    G      + + +A
Sbjct: 83  SKIGRQLLGTSSDRLQENSLFDVVDAIRQAKDDSNIKGMVLDLRDFAGGDQPSLQYVGKA 142

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           +++ +     I  + +  + A Y ++  +  I  +    V   G      Y K  L+KL 
Sbjct: 143 LREFRESGKPIYALGDSYSQAQYYLASYATKIYLSPQGTVDLHGFATNGLYYKTLLEKLK 202

Query: 150 VSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK---- 203
           V+    +    K+   PF   +++P A       V   +  ++  VS +R I  ++    
Sbjct: 203 VNSHVFRVGTYKSAVEPFLRDDMSPAARDADTRWVGQLWQNYLNTVSANRQITPEQLFPG 262

Query: 204 ----TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
                  L   +  TG  A    L+DV+G + +  Q L        
Sbjct: 263 ATAIIAGLQAVKGDTGQYALDNKLVDVLGSRADADQMLIKTFGFDK 308


>gi|299769100|ref|YP_003731126.1| putative protease; putative signal peptide peptidase sppA
           [Acinetobacter sp. DR1]
 gi|298699188|gb|ADI89753.1| putative protease; putative signal peptide peptidase sppA
           [Acinetobacter sp. DR1]
          Length = 338

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 130/295 (44%), Gaps = 20/295 (6%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQI-------EDSQELI 54
             K +   Y++  +V +     +    S V  +S H+A + I G I        +S++  
Sbjct: 45  FFKTLTFIYLLFIIVLMGKGCSTSKEGSAVSSSSAHLAVVDIIGTIDASSNQSVNSEDTN 104

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAG 111
           + ++R     ++ A+ ++++SPGGS    + I++ I+ +      K V   + +M AS  
Sbjct: 105 KALKRAFEASNSKAIALNINSPGGSPVQSDEIWQEIRYLKKQHPDKKVYAVIGDMGASGA 164

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I+   +SLVGSIGV+     +     KLG+  +++ +   K   S    ++
Sbjct: 165 YYIASAADEIIVNPSSLVGSIGVIMPNYGITGLAQKLGIEDRTLTAGTNKDILSMTKPID 224

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
           P   Q +Q V+D+ +  F+  V E R          +  G  WTG +A ++G+ D  G  
Sbjct: 225 PVQKQHIQSVLDNVHTHFITAVKEGRGKRLKSNDPAIFSGLFWTGEQAIQLGVADRSGNI 284

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
             + + L       ++    D+   +N     L  +        +  + ++ + +
Sbjct: 285 TSLMREL-------NLDNKVDYTIERNPLQSILGRMGAQIGQGVSESIAQEVQTR 332


>gi|78356487|ref|YP_387936.1| signal peptide peptidase A [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218892|gb|ABB38241.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 320

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 73/317 (23%), Positives = 138/317 (43%), Gaps = 29/317 (9%)

Query: 5   LKKIKTRYVMLSLVT----LTVVYFSWSSHVE------DNSPHVARIAIRGQIED----- 49
           ++ +    +++SL+       V  F     ++           +  + + G I++     
Sbjct: 1   MRYMAVFMILVSLLATGCASGVKLFGGPEALKEYQLQGSGDAKIVVLPVAGVIDNKPERG 60

Query: 50  --------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK--PV 99
                    Q ++ R+     D +  A+I+++ SPGGS  + + ++  I + K R    V
Sbjct: 61  IFADKPGLVQSVVARLRMAEMDPAVRAVILTVDSPGGSVTSSDVLYNEIMRFKQRTGTRV 120

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
           +    +MA S GY +S A++ I+A  +++ GSIG +F  P V   ++K+GV   + KS  
Sbjct: 121 VALQMDMATSGGYYVSIAADRIIAHPSTITGSIGTIFMRPNVTGLMEKIGVQAVTTKSGA 180

Query: 160 MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAK 219
            K   SPF E  P+   ++Q++V +    F++LVSE R +   +    SD RI T  EA 
Sbjct: 181 HKDIGSPFRENTPEEQAILQNMVTTLNSRFIKLVSERRELQGRE-SSYSDARIMTAQEAL 239

Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP---KNYWFCDLKNLSISSLLEDTI 276
           ++GL+D +G  +    + + L        +     P      +         + L+E  +
Sbjct: 240 ELGLVDSIGYFDNAVAAAHELAGLDEASVVVYRREPFPNDTPYNTITAQAGSAPLVEMPL 299

Query: 277 PLMKQTKVQGLWAVWNP 293
                    G + +W P
Sbjct: 300 ARPLNVPSTGFYYLWAP 316


>gi|329123556|ref|ZP_08252118.1| signal peptide peptidase SppA [Haemophilus aegyptius ATCC 11116]
 gi|327470298|gb|EGF15758.1| signal peptide peptidase SppA [Haemophilus aegyptius ATCC 11116]
          Length = 616

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 128/257 (49%), Gaps = 14/257 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGS 79
           +  +++   +A + + G I D +          +   + +   D+S  A+++ ++SPGGS
Sbjct: 316 TPQDNSPNKIAVVNVEGTIIDGESDEENAGGDTIARILRKAQDDNSVKAVVLRVNSPGGS 375

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           A+A E I +  + ++   KPVI  +  MAAS GY IS  ++ I+A   ++ GSIG+   +
Sbjct: 376 AFASEMIRQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFAMF 435

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P  +  + K+GV+   V ++ +    S FS +      + Q  ++  Y  F+ +VS+ R 
Sbjct: 436 PTFENSIKKIGVNADGVSTTELANT-SAFSPLAKPVQDIYQTEIEYGYDRFLEIVSKGRQ 494

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           +   +   L+ G++W G++A +  L+D +G   E       L   +    ++D++     
Sbjct: 495 LSKTQVDKLAQGQVWLGSDAFQNDLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE--- 551

Query: 259 WFCDLKNLSISSLLEDT 275
           WF D     IS+LL DT
Sbjct: 552 WFTDDNVSLISTLLRDT 568



 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 110/285 (38%), Gaps = 44/285 (15%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA----RIAIRGQIEDSQE------- 52
            ++ +    V L  V L V   S+SS  + ++  +      + + G + D+++       
Sbjct: 14  FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTTLIGEGALLLNLDGYLADNRDETLRWQD 73

Query: 53  ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93
                             ++  I++   D     L++ L+   G    A + I  AI+  
Sbjct: 74  ALNELNGKHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAIRHF 133

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K+    +    +  +   Y ++  ++ I       V   G+  +  Y K  LDKL V+  
Sbjct: 134 KDAGKSVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF  ++++ +A   MQ  +   ++ ++  VSE+R I  D+   L + +
Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYILSVSENRKIKKDRI--LPNAK 251

Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
            +              A++ GL+  V  + ++ + L AL    + 
Sbjct: 252 QYLAELKELKGNSTAYAQQRGLVTDVVTRLDLEKKLTALFGKNAD 296


>gi|291617657|ref|YP_003520399.1| SppA [Pantoea ananatis LMG 20103]
 gi|291152687|gb|ADD77271.1| SppA [Pantoea ananatis LMG 20103]
          Length = 624

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 135/285 (47%), Gaps = 22/285 (7%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATAL 69
           ++++  ++          ++A I   G I D  E            +I     D    A+
Sbjct: 315 SVSIYDYNVKPDATQQKGNIAVIMASGAIMDGDETPGNVGGDTTAAQIRDARLDPKIKAI 374

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           I+ ++SPGGS  A EAI   +   K   KP++  +  MAAS GY IS  ++ I+A+ ++L
Sbjct: 375 ILRVNSPGGSVTASEAIRAELAAAKAAGKPIVVSMGGMAASGGYWISTPASYIIASPSTL 434

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIG+      ++  L  +GV    V +SP+    +    + P+  Q+MQ  +++ YH 
Sbjct: 435 TGSIGIFGVINTLENSLASIGVHTDGVATSPLADV-ASTKALPPEVQQLMQLTIENGYHN 493

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           FV LV+ SR+   ++   ++ G +WTG++AK  GL+D +G  ++  +    L      + 
Sbjct: 494 FVGLVAASRHKTPEQIDAIAQGHVWTGSDAKANGLVDALGDFDDAVKKAAELAKVS--QP 551

Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
             DW   ++  F DL    +++ ++  +P         + A W P
Sbjct: 552 QLDW-YQEDPGFIDLMLNQMNASVQAVLP-------DPIKA-WLP 587



 Score = 82.7 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 98/286 (34%), Gaps = 41/286 (14%)

Query: 1   MEFVLK---KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------ 51
           + F+ +    +   ++++  V + +      SH         ++ + G + D        
Sbjct: 23  LNFIRELILNLFLIFLIVVCVGIWLQVSGSGSHSAPIQQGALKVDLTGVLVDKPSVSNRL 82

Query: 52  ---------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRA 89
                                ++++ I +   D +   +++ L    G      + + +A
Sbjct: 83  SKIGRQLLGTSSDRLQENSLFDVVDAIRQAKDDSNIKGMVLDLRDFAGGDQPSLQYVGKA 142

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           +++ +     I  + +  + A Y ++  +  I  +    V   G      Y K  L+KL 
Sbjct: 143 LREFRESGKPIYALGDSYSQAQYYLASYATKIYLSPQGTVDLHGFATNGLYYKTLLEKLK 202

Query: 150 VSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK---- 203
           V+    +    K+   PF   +++P A       V   +  ++  VS +R I  ++    
Sbjct: 203 VNSHVFRVGTYKSAVEPFLRDDMSPAARDADTRWVGQLWQNYLNTVSANRQITPEQLFPG 262

Query: 204 ----TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
                  L   +  TG  A    L+DV+G + +  Q L        
Sbjct: 263 ATAIIAGLQAVKGDTGQYALDNKLVDVLGSRADADQMLIKTFGFDK 308


>gi|296270823|ref|YP_003653455.1| signal peptide peptidase SppA, 36K type [Thermobispora bispora DSM
           43833]
 gi|296093610|gb|ADG89562.1| signal peptide peptidase SppA, 36K type [Thermobispora bispora DSM
           43833]
          Length = 563

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 75/272 (27%), Positives = 120/272 (44%), Gaps = 25/272 (9%)

Query: 38  VARIAIRGQI---------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
           VA I   G I                 S  +        +DD   A++  + SPGGS  A
Sbjct: 276 VALIHGIGPIRLGRSGRSPLGASGSMGSDTICAAFRAARKDDKIKAVVFRVDSPGGSYVA 335

Query: 83  GEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
            +AI+R +    +  KPVI  + ++AAS GY +S A+N+I A   +L GSIGV    P +
Sbjct: 336 SDAIWREVLLTRQAGKPVIVSMGDVAASGGYFVSMAANVIFAHPGTLTGSIGVYGGKPVI 395

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L KLGV+ ++V         S   E +    + +   +D  Y  FV  V+++R +  
Sbjct: 396 SELLGKLGVTSEAVSMGENAEMFSTSREFSAAQWERLNTWLDRVYEDFVTKVADARGLSK 455

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
           D    L+ GR+WTGA+A + GL+D +GG E+      +     +   ++ +         
Sbjct: 456 DHAHELAKGRVWTGADAVRNGLVDELGGLEDALALARSRAGLPATAPVRIY-----PHLN 510

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
            L+ +      ED    M + +V+     W P
Sbjct: 511 PLERIRPPESSEDRSAAMARLRVEA----WGP 538



 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 88/245 (35%), Gaps = 9/245 (3%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT-----EVHE 105
            +++  + R  RD    AL+V + +        + +  AI K++                
Sbjct: 53  DDVLAGLNRARRDPRVKALLVKIGNAPLGLGMVQELRTAIIKLRAAGKRTIAFAESFGEV 112

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--E 163
              +  Y ++ A + I    +  VG  G+  +  +++  L K GV  +  +    K    
Sbjct: 113 STGTVPYYLATACDRIYLQPSGDVGLTGLSVETRFLRDALAKAGVEFQLGQRHEYKTAAN 172

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
               + +     +    +V+S+    +  +++ R +   +   L D   + GAEA + GL
Sbjct: 173 VFTQNHMTEPHRESTARIVESAMEQVIEGIAQGRRLDPARVRELVDRGPFLGAEAVEAGL 232

Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
           +D +  ++EV      +G D  +R +  +                 +L+    P+     
Sbjct: 233 VDGLKYRDEV--YAETVGEDGRLRYVTRYAKEAAAKRLPHPGAGAVALIHGIGPIRLGRS 290

Query: 284 VQGLW 288
            +   
Sbjct: 291 GRSPL 295


>gi|150004168|ref|YP_001298912.1| protease IV [Bacteroides vulgatus ATCC 8482]
 gi|294777915|ref|ZP_06743357.1| signal peptide peptidase SppA, 67K type [Bacteroides vulgatus
           PC510]
 gi|149932592|gb|ABR39290.1| protease IV [Bacteroides vulgatus ATCC 8482]
 gi|294448244|gb|EFG16802.1| signal peptide peptidase SppA, 67K type [Bacteroides vulgatus
           PC510]
          Length = 593

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 133/278 (47%), Gaps = 19/278 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVSLSSPGG 78
             + +   +A     G+I D+           Q++ + + ++  +D   A+++ ++SPGG
Sbjct: 298 PKDKSGNIIAVYYAYGEILDAPGSSTEDCIDVQKMCKDLRKLRDNDDVKAVVLRVNSPGG 357

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQ 137
           SAY  + I+R + ++K +KPVI  + + AAS GY ISCA+N I A  T+L GSIG+    
Sbjct: 358 SAYGSDQIWREVVRLKEKKPVIVSMGDYAASGGYYISCAANRIFADPTTLTGSIGIFGMM 417

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKA-----EPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           Y   K F + LG++   VK++ M        P     +N    ++MQ+ V+  Y  FV  
Sbjct: 418 YSGEKLFTETLGLNFDVVKTNKMADLGASLGPVLTRPLNASEQELMQNYVNRGYKLFVNR 477

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
            +E R +  +    +++GR+WTGA AK +GL+D +GG ++   +       ++   I   
Sbjct: 478 CAEGRKMSTEAIEKVAEGRVWTGAMAKDLGLVDELGGIDKALNAAATQAGIENYSIIGY- 536

Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
            P K   F  L        +   I     +      A+
Sbjct: 537 -PEKENIFASLLGNQKKHYINSEIKEYLGSYYNSFKAL 573



 Score =  107 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 99/261 (37%), Gaps = 23/261 (8%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQE 52
           + +L ++TL  +  S  +        +  +  +G +                       +
Sbjct: 22  FTILGIITLVGIVASSDTETVVKDNSIFVLDFKGSLSERVQENPLQQLLGEEFEAYGLDD 81

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++  I++   +D    + +  S    S  + E I  A+   K     I    +  A   Y
Sbjct: 82  ILASIKKAKDNDKIKGIYIQPSYLEASYASLEEIRNALLDFKESGKFIVAYADQYAQGMY 141

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEV 170
            +S  ++ I+      +G  G   Q  + K  + KLG+ ++  +    K+   PF  +E+
Sbjct: 142 YLSSVADKIIINPQGSIGWHGAGMQPVFFKNLVSKLGLEVQVFRVGTYKSAVEPFIATEM 201

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--GAEAKKVGLIDVVG 228
           +P   + M + ++S +H  +  VS+SR IP D     +D  +      E  +  L D + 
Sbjct: 202 SPANREQMTECLESVWHRILADVSDSRRIPTDTLNAYADRYMDFCQAEEYIQCKLADTLM 261

Query: 229 GQEEVWQSLYALGVDQSIRKI 249
            ++EV   L  L       K+
Sbjct: 262 YKDEVISYLKQLSGRDENDKL 282


>gi|126433677|ref|YP_001069368.1| signal peptide peptidase SppA, 67K type [Mycobacterium sp. JLS]
 gi|126233477|gb|ABN96877.1| signal peptide peptidase SppA, 67K type [Mycobacterium sp. JLS]
          Length = 593

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 64/283 (22%), Positives = 117/283 (41%), Gaps = 21/283 (7%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70
            S       P +A + + G I                     +   +   + D   +A++
Sbjct: 291 PSIPGRKAKPTIAVVTLHGPIVSGRGGPGLSPLGNSSAGGDTIAAALREAAADKDVSAIV 350

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLV 129
           + + SPGGS    E I+R + + +     +   +  +AAS GY +S  ++ IVA   ++ 
Sbjct: 351 LRVESPGGSVTGSETIWREVLRTREGGTPVVASMGAVAASGGYYVSMGADAIVANPGTIT 410

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+      +   D+LGV   SV+++      S  S    +    ++   D  Y  F
Sbjct: 411 GSIGVVTGKLVARELKDRLGVGSDSVRTNANADAWSANSPFTDEQQAHVEAEADLFYTDF 470

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V  V++ R +  D+   ++ GR+WTGA+AK  GL+D +GG          L   +    +
Sbjct: 471 VERVADGRGLSVDEVAEVARGRVWTGADAKDRGLVDELGGLRTAIDRAKVLAGLEPDTDV 530

Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288
           +    P +     L+    +   ++ L D + ++    V  L 
Sbjct: 531 RIVGYPASSLLDLLRPKQSSQPAAASLPDALGVLVGRSVVSLI 573



 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 84/237 (35%), Gaps = 2/237 (0%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79
           +  +              +A I+  G+    ++++  I R + DD    LI  +      
Sbjct: 34  VLELDLMSVPPETSGFDPLAMISAGGRPMVLRQVVAAIHRAADDDRVAGLIARVQISAAP 93

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           A   + +  AI     +KP +        +  Y ++ A   +    +  VG +G      
Sbjct: 94  AAPVQELREAIAAFSAKKPSVAWAETYPGTLSYYLASAFREVWMQPSGTVGLVGFATSAL 153

Query: 140 YVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +++  LDK G+  +       K+               +    +++S     +  V+ESR
Sbjct: 154 FLRDALDKAGIQAQFTARGEYKSAANLFTQDSYTEPHREADSRLIESLNQQVLTAVAESR 213

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
            +  D    L+D        A   GL+D +G ++E +  +  L   + +      +P
Sbjct: 214 KLNPDDIDALADKAPLLRDAAVDGGLVDRIGFRDEAYARVAELAGAEGVTPQNTDSP 270


>gi|120598749|ref|YP_963323.1| signal peptide peptidase SppA, 67K type [Shewanella sp. W3-18-1]
 gi|146293174|ref|YP_001183598.1| signal peptide peptidase SppA, 67K type [Shewanella putrefaciens
           CN-32]
 gi|120558842|gb|ABM24769.1| signal peptide peptidase SppA, 67K type [Shewanella sp. W3-18-1]
 gi|145564864|gb|ABP75799.1| signal peptide peptidase SppA, 67K type [Shewanella putrefaciens
           CN-32]
 gi|319426314|gb|ADV54388.1| signal peptide peptidase SppA, 67K type [Shewanella putrefaciens
           200]
          Length = 615

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/280 (23%), Positives = 120/280 (42%), Gaps = 14/280 (5%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSL 73
           +              V  I   G I                E + +   D    AL++ +
Sbjct: 312 LTLVAPKPSFIEQDSVGIIVASGTILNGKQPAGQIGGDSTAELLRKARFDKHIKALVLRV 371

Query: 74  SSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
            SPGGSA+A E I + +  +K   KPV+  +  +AAS GY IS +++ I A  T+L GSI
Sbjct: 372 DSPGGSAFASEQIRQELLALKAAGKPVVVSMGSLAASGGYWISASADYIFATPTTLTGSI 431

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           G+       +  LD +G+    V +S         + ++     ++Q  ++  Y  F+ L
Sbjct: 432 GIFGMITTFEDSLDSIGIHTDGVSTSEWAGLSVTRT-LSSSVEAVIQRHIERGYLNFISL 490

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKD 251
           V++ RN+  ++   ++ GR+W+G +A ++GL+D +G  +E       L        ++ +
Sbjct: 491 VAKERNMTLEQVDSIAQGRVWSGKKALELGLVDELGDIDEAIAKAAKLANLNLFDTRVIE 550

Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
                   F      S+SS L  ++     + ++ +   W
Sbjct: 551 QELTPEQLFIQQMFASVSSYLPASLS--HSSVLEQMLQQW 588


>gi|242239399|ref|YP_002987580.1| signal peptide peptidase SppA, 67K type [Dickeya dadantii Ech703]
 gi|242131456|gb|ACS85758.1| signal peptide peptidase SppA, 67K type [Dickeya dadantii Ech703]
          Length = 617

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 11/226 (4%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
           ++   +S  +A I   G I D              ++I     D    A+++ ++SPGGS
Sbjct: 318 NNPVADSNEIAVIFANGTIVDGPETPGFVGGDTTADQIREARLDPKIKAVVLRVNSPGGS 377

Query: 80  AYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +  V +  KPV+  +  MAAS GY IS  ++ I+A+ ++L GSIG+    
Sbjct: 378 VSASELIRAELAAVRQAGKPVVVSMGGMAASGGYWISTPASAIIASPSTLTGSIGIFGVL 437

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  LD +GV    V +SP+          +  A  +MQ  ++  Y  FV LV++SR 
Sbjct: 438 TTFENSLDSVGVHTDGVATSPLADLAETKGLPSETAQ-LMQINIERGYKTFVSLVAQSRK 496

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
              +    ++ G +W G++AK  GL+D +G  ++  +    L   +
Sbjct: 497 KTPEDVDAIAQGHVWIGSDAKANGLVDQLGDFDDAVKKAADLAGLE 542



 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 114/333 (34%), Gaps = 50/333 (15%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARI-AIRGQIEDSQ-------- 51
           + F+ + I   +++  ++    +Y  + +         A +  + G + D          
Sbjct: 19  LNFIREFILNLFLLALILIAVGIYSQFKTAQVVEPTRGALLFDLSGIVVDKPSINNKLRQ 78

Query: 52  -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91
                              ++++ I +   D++ T +++ LS   G+     + I +A++
Sbjct: 79  LGREFFGVAPNRRQENSLFDIVDTIRQAKDDNNITGMVMDLSDFSGADQPSLQYIGKALR 138

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           + ++    I  + +    A Y ++  +N I       V   G      Y K  LDKL VS
Sbjct: 139 EFRDAGKPIFAIGDNFTQAQYYLASFANKIYLTPQGNVDLHGFATNNLYYKTLLDKLKVS 198

Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------ 203
               +    K+   PF   +++P A +     V   +  ++  V+ +R I   +      
Sbjct: 199 THIFRVGTYKSAVEPFIRDDMSPAAREADSRWVSLLWQNYLNTVAANRQITAQQLFPGAD 258

Query: 204 --TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA------LGVDQSIRKIKDWNPP 255
                L      T   A +  L+D V  +  + QSL           + +   I D+ P 
Sbjct: 259 GLLKNLRAVEGDTARYALENKLVDEVATRPAIEQSLVKAFGWDAKNKNFNATSIYDYKPN 318

Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                 +   +  ++       ++   +  G  
Sbjct: 319 NPVADSNEIAVIFANGT-----IVDGPETPGFV 346


>gi|57168750|ref|ZP_00367881.1| protease IV (PspA) [Campylobacter coli RM2228]
 gi|305432508|ref|ZP_07401670.1| signal peptide peptidase SppA [Campylobacter coli JV20]
 gi|57019797|gb|EAL56480.1| protease IV (PspA) [Campylobacter coli RM2228]
 gi|304444547|gb|EFM37198.1| signal peptide peptidase SppA [Campylobacter coli JV20]
          Length = 298

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 136/287 (47%), Gaps = 2/287 (0%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           +  V+K I T +    L+ + +     SS+   +  ++ RI ++G+I DS EL+E+I   
Sbjct: 11  LGSVIKFINTYFKTFVLLLIVIWLLVPSSNSSSSYANLERIDLKGEILDSSELLEKIISA 70

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
             +D+   ++  + SPGG+      +  AI+ +K +KPVI       AS  YL    +N 
Sbjct: 71  KNNDNIKGVLFVIDSPGGAFAPSMELALAIKDLKTKKPVIAYASGTMASGSYLAGVGANK 130

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           I+A   S +GSIGV+ Q   +     K+G+  +++++   K+  +     + +  + +Q+
Sbjct: 131 ILANPASFIGSIGVIMQGADLSELAKKIGIKEQTIQAGEFKSAGTFTRAWSEEEREFLQN 190

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           ++D SY  F   V++ R++  DK    ++ R++    AK +GLID +   E   + L  L
Sbjct: 191 LIDESYDLFSEFVAKERDLELDKRKDWANARVFLAQNAKDLGLIDELSNYENAKKELQEL 250

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
                +  +       + +   L++ S + L +     + +     L
Sbjct: 251 AKV--LNPVWKEEGRIDRFLNRLESQSSNFLGKVISDTVLRLNANFL 295


>gi|62179887|ref|YP_216304.1| protease 4 [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62127520|gb|AAX65223.1| protease IV, a signal peptide peptidase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
          Length = 618

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 14/268 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +A I   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  L  +GV    V +SP+    S    ++P+  QMMQ  ++  Y  F+ LV+++R 
Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        +  +      
Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLAYYQDEPTV 556

Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284
               + +++ S  ++L + I  M    +
Sbjct: 557 LDMVMDSMTGSVRAMLPEAIQAMLPAPL 584



 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 99/282 (35%), Gaps = 40/282 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           +  V + +    ++ L LV + +       S+ E  +     + I G I D         
Sbjct: 19  LNLVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90
                               +++  I +   D + T +++ L +  G+       I +A+
Sbjct: 79  ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  VS +R I   +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             + DG       T   A    L+D +    +V ++L     
Sbjct: 259 QAIIDGLTSVGGDTAKYAFDHKLVDALASSADVEKALTKQFG 300


>gi|265757003|ref|ZP_06090865.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 3_1_33FAA]
 gi|263233502|gb|EEZ19131.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 3_1_33FAA]
          Length = 593

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 133/278 (47%), Gaps = 19/278 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVSLSSPGG 78
             + +   +A     G+I D+           Q++ + + ++  +D   A+++ ++SPGG
Sbjct: 298 PKDKSGNVIAVYYAYGEILDAPGSSTEDCIDVQKMCKDLRKLRDNDDVKAVVLRVNSPGG 357

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQ 137
           SAY  + I+R + ++K +KPVI  + + AAS GY ISCA++ I A  T+L GSIG+    
Sbjct: 358 SAYGSDQIWREVVRLKEKKPVIVSMGDYAASGGYYISCAADRIFADPTTLTGSIGIFGMM 417

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKA-----EPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           Y   K F + LG++   VK++ M        P     +N    ++MQ+ V+  Y  FV  
Sbjct: 418 YSGEKLFTETLGLNFDVVKTNKMADLGASLGPILTRPLNASEQELMQNYVNRGYKLFVSR 477

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
            +E R +  +    +++GR+WTGA AK +GLID +GG ++   +       ++   I   
Sbjct: 478 CAEGRKMSTEAIEKVAEGRVWTGAMAKDLGLIDELGGIDKALNAAATQAGIENYSIIGY- 536

Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
            P K   F  L        +   I     +      A+
Sbjct: 537 -PEKENIFASLLGNQKKHYVNSEIKEYLGSYYNSFKAL 573



 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 99/261 (37%), Gaps = 23/261 (8%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQE 52
           + +L ++TL  +  S  +        +  +  +G +                       +
Sbjct: 22  FTILGIITLVGIVASSDTETVVKDNSIFVLDFKGSLSERVQENPLQQLLGEEFEAYGLDD 81

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++  I++   +D    + +  S    S  + E I  A+   K     I    +  A   Y
Sbjct: 82  ILASIKKAKDNDKIKGIYIQPSYLEASYASLEEIRNALLDFKESGKFIVAYADQYAQKMY 141

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEV 170
            +S  ++ I+      +G  G   Q  + K  + KLG+ I+  +    K+   PF  +E+
Sbjct: 142 YLSSVADKIIINPQGSIGWHGAGMQPVFFKNLVSKLGLEIQVFRVGTYKSAVEPFIATEM 201

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--GAEAKKVGLIDVVG 228
           +P   + M + ++S ++     VS+SR+IP D     +D  +      E  + GL D + 
Sbjct: 202 SPANREQMTECLESVWNRIQADVSDSRHIPTDTLNAYADRYMDFCQAEEYVQCGLADTLM 261

Query: 229 GQEEVWQSLYALGVDQSIRKI 249
            + EV   L  L       K+
Sbjct: 262 YKNEVISYLKQLSGRDEDDKL 282


>gi|254882872|ref|ZP_05255582.1| protease IV [Bacteroides sp. 4_3_47FAA]
 gi|319639672|ref|ZP_07994407.1| protease IV [Bacteroides sp. 3_1_40A]
 gi|254835665|gb|EET15974.1| protease IV [Bacteroides sp. 4_3_47FAA]
 gi|317388703|gb|EFV69547.1| protease IV [Bacteroides sp. 3_1_40A]
          Length = 593

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 77/286 (26%), Positives = 136/286 (47%), Gaps = 19/286 (6%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALI 70
           ++    +   + +   +A     G+I D+           Q++ + + ++  +D   A++
Sbjct: 290 IINVKKNVPKDKSGNIIAVYYAYGEILDAPGSSTEDCIDVQKMCKDLRKLRDNDDVKAVV 349

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + ++SPGGSAY  + I+R + ++K +KPVI  + + AAS GY ISCA+N I A  T+L G
Sbjct: 350 LRVNSPGGSAYGSDQIWREVVRLKEKKPVIVSMGDYAASGGYYISCAANRIFADPTTLTG 409

Query: 131 SIGVL-FQYPYVKPFLDKLGVSIKSVKSSPMKA-----EPSPFSEVNPKAVQMMQDVVDS 184
           SIG+    Y   K F + LG++   VK++ M        P     +N    ++MQ+ V+ 
Sbjct: 410 SIGIFGMMYSGEKLFTETLGLNFDVVKTNKMADLGASLGPVLTRPLNASEQELMQNYVNR 469

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            Y  FV   +E R +  +    +++GR+WTGA AK +GL+D +GG ++   +       +
Sbjct: 470 GYKLFVNRCAEGRKMSTEAIEKVAEGRVWTGAMAKDLGLVDELGGIDKALNAAATQAGIE 529

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
           +   I    P K   F  L        +   I     +      A+
Sbjct: 530 NYSIIGY--PEKENIFASLLGNQKKHYINSEIKEYLGSYYNSFKAL 573



 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 99/261 (37%), Gaps = 23/261 (8%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQE 52
           + +L ++TL  +  S  +        +  +  +G +                       +
Sbjct: 22  FTILGIITLVGIVASSDTETVVKDNSIFVLDFKGSLSERVQENPLQQLLGEEFEAYGLDD 81

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++  I++   +D    + +  S    S  + E I  A+   K     I    +  A   Y
Sbjct: 82  ILASIKKAKDNDKIKGIYIQPSYLEASYASLEEIRNALLDFKESGKFIVAYADQYAQGMY 141

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEV 170
            +S  ++ I+      +G  G   Q  + K  + KLG+ ++  +    K+   PF  +E+
Sbjct: 142 YLSSVADKIIINPQGSIGWHGAGMQPVFFKNLVSKLGLEVQVFRVGTYKSAVEPFIATEM 201

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--GAEAKKVGLIDVVG 228
           +P   + M + ++S +H  +  VS+SR IP D     +D  +      E  +  L D + 
Sbjct: 202 SPANRKQMTECLESVWHRILADVSDSRRIPTDTLNAYADRYMDFCQAEEYIQCKLADTLM 261

Query: 229 GQEEVWQSLYALGVDQSIRKI 249
            ++EV   L  L       K+
Sbjct: 262 YKDEVISYLKQLSGRDEDDKL 282


>gi|2129226|pir||C64381 proteinase IV (EC 3.4.-.-) - Methanococcus jannaschii
          Length = 315

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/280 (25%), Positives = 142/280 (50%), Gaps = 17/280 (6%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIE---------------DSQELIERIERISRD 63
            L V+  S  +        +A++ +  +I                D++  I  ++ + +D
Sbjct: 27  ILLVMSLSGENVDLFGGEKIAKVYLCNEIYFDYNQGDGIFPQQKKDARYYINLLDDLEKD 86

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
           DS   +++ ++SPGG   A E + R ++++  +KPV+  V  + AS  Y++S  ++ IVA
Sbjct: 87  DSVKGVLLVVNSPGGEVIASEKLARKVEELAKKKPVVVYVEGLDASGAYMVSAPADYIVA 146

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
            + S+VGSIGV     +    + KLG+++ ++K+   K   SPF  +  +  + +Q +++
Sbjct: 147 EKHSIVGSIGVRMDLMHYYGLMKKLGINVTTIKAGKYKDIGSPFRPMTKEEKEYLQKMIN 206

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
            +Y  FV+ V+E R++  + TL ++DG+I++G +AKKVGL+D VG +E+  + L  L   
Sbjct: 207 ETYMDFVKWVAEHRHLSINYTLKIADGKIYSGEDAKKVGLVDEVGTEEDALKKLEQLANV 266

Query: 244 QSIRKIKDWNPPKNYWFCDL--KNLSISSLLEDTIPLMKQ 281
            +   ++         F         I   + + +  M++
Sbjct: 267 SNPEIVEYGLEENKGLFGLTYYLGYGIGKGIGEVLYGMEK 306


>gi|89073275|ref|ZP_01159805.1| putative protease IV [Photobacterium sp. SKA34]
 gi|89050985|gb|EAR56449.1| putative protease IV [Photobacterium sp. SKA34]
          Length = 615

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 66/262 (25%), Positives = 119/262 (45%), Gaps = 12/262 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           ++            + +   VA I   G I D            +   + +   D+   +
Sbjct: 306 ISYYDYLSMLVDDQKPSDNKVAVIVASGAIVDGKSSQGTAGGDTIAALLRKARFDNDVKS 365

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +I+ + SPGGSA+A E I   +  +K   KPV+  +  +AAS GY IS +++ I+A  T+
Sbjct: 366 VILRVDSPGGSAFASEVIRNEVDALKAAGKPVVVSMSSVAASGGYWISSSADKIIAQPTT 425

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           + GSIG+       +  L+KLGV    V ++P  +       +     ++ Q  VD+ Y 
Sbjct: 426 ITGSIGIFAILTTFEKSLEKLGVYSDGVGTTPF-SGVGVTRALPENIGKVFQLGVDNGYQ 484

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F+ LVS+ R++  ++   ++ GR+WTG +AK+ GL+D +G  +       +L       
Sbjct: 485 RFIGLVSKYRHMSLEQADKIAQGRVWTGKDAKERGLVDELGDFDTAITEAVSLAKI-DDY 543

Query: 248 KIKDWNPPKNYWFCDLKNLSIS 269
           ++     P +      K +S  
Sbjct: 544 QLVWMQQPLSPIQQFFKEMSSE 565



 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/325 (15%), Positives = 110/325 (33%), Gaps = 39/325 (12%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + F  K I     +L +  +   +       E        + + G I + +         
Sbjct: 19  INFARKFILNLVFLLIVGAIIFAFSDNDESPEKPEASALVLNLSGPIVEQKNYDNPLDSV 78

Query: 52  ----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVK 94
                           +++E I   + D S T L+++  + P  S      I +AIQ+ K
Sbjct: 79  ISDVMGQPPVEQNVLFDIVEAIRTATTDSSITGLVLNLKNMPETSLTKLRYIAKAIQEFK 138

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
                +       + + Y ++  ++ I  +    +   G      Y K  L+KL V+   
Sbjct: 139 ASGKPVYAYGGHYSQSQYYLASYADKIFMSPDGGIMLKGYGTYTLYYKTLLEKLDVTTHV 198

Query: 155 VKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------T 204
            +    K+   P+    ++  A +     +D  +  +   V+++RNI             
Sbjct: 199 FRVGTYKSFVEPYIRDGMSTPAKEANTVWLDQLWDAYTSDVAKNRNIDAKTLTPEMNSFI 258

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI---RKIKDWNPPKNYWFC 261
             L          +KK+GL+D +  + ++ Q L     D      ++I  ++        
Sbjct: 259 EQLIAVNGDFAQLSKKMGLVDELVTRPQLSQILMKEFGDNGEHSFKQISYYDYLSMLVDD 318

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQG 286
              + +  +++  +  ++     QG
Sbjct: 319 QKPSDNKVAVIVASGAIVDGKSSQG 343


>gi|161614303|ref|YP_001588268.1| protease 4 [Salmonella enterica subsp. enterica serovar Paratyphi B
           str. SPB7]
 gi|161363667|gb|ABX67435.1| hypothetical protein SPAB_02048 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 618

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 14/268 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +A I   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  L  +GV    V +SP+    S    ++P+  QMMQ  ++  Y  F+ LV+++R 
Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        +  +      
Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556

Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284
               + +++ S  ++L + I  M    +
Sbjct: 557 LDMVMDSMTGSVRAMLPEAIQAMLPAPL 584



 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +       S+ E  +     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90
                               +++  I +   D + T +++ L +  G+       I +A+
Sbjct: 79  ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  VS +R I   +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             + DG       T   A    L+D +    +V ++L     
Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300


>gi|301311313|ref|ZP_07217240.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 20_3]
 gi|300830399|gb|EFK61042.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 20_3]
          Length = 588

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/259 (26%), Positives = 122/259 (47%), Gaps = 14/259 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLS 74
            +    N+P +A +   G+I+               +++ + + ++  +D   A++  ++
Sbjct: 295 KASPTKNAPEIAVLYAEGEIKAQTPGNFYDIEQSITEKMADELIKLKNNDDVKAVVFRVN 354

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGGSAY  E I+R + ++K  KPV+  +  +AAS GY ISCA+N I+A   +L GSIG+
Sbjct: 355 SPGGSAYISEQIWRQVVELKKVKPVVVSMGNVAASGGYYISCAANKIIAEPNTLTGSIGI 414

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
              +P       KL ++   VK++           +      ++Q  V+  Y  F+   +
Sbjct: 415 FGMFPNASGLFGKLALTTDIVKTNTFSDLGDLSRPMTESEKALIQGYVERGYQTFLSRCA 474

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           E R +  +    +  GR+WTG +AK+ GL+D +GG E    +   L  D     +   + 
Sbjct: 475 EGRGMTTEAVNAIGQGRVWTGEQAKERGLVDELGGIELAISTAAGLA-DLDQYSVTTVSG 533

Query: 255 PKNYWFCDLKNLSISSLLE 273
            KN+    L++      L 
Sbjct: 534 SKNFLDEFLESQLGEVKLS 552



 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 98/262 (37%), Gaps = 26/262 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVED---NSPHVARIAIRGQIEDS------------------ 50
            ++  L+++T+ Y +      D    S  V +I + G + D+                  
Sbjct: 21  IILTVLISMTIGYIATVGSTPDYTPKSNTVFKIKLDGTLADNPAENPFSALMGDKENMLS 80

Query: 51  -QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
            ++L+E I    ++D    + +        + + EAI R++   K     +    +    
Sbjct: 81  LKDLLETIRIAKQNDKIAGIYIESGLLSSGSASLEAIRRSLIDFKESGKFVVAYADNFTQ 140

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y +   ++ +      ++   G+  Q  + K  +DK+G+ ++  K    K    PF  
Sbjct: 141 GNYFLCSVADKVFLNPQGILELTGLASQTLFYKGLMDKVGIEMQIFKVGTYKGAVEPFIL 200

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA--EAKKVGLID 225
            +++    + +Q  + + +      ++ESR I  +     ++  ++     +  + G ID
Sbjct: 201 DKLSEANREQIQSYISTIWDNIAEGIAESRGISVNDINHYANEGLFFADPVKTVECGFID 260

Query: 226 VVGGQEEVWQSLYALGVDQSIR 247
            +  + EV   +  L      +
Sbjct: 261 ELKYKPEVEAYVKELAGQNGEK 282


>gi|168233210|ref|ZP_02658268.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194469685|ref|ZP_03075669.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|200389848|ref|ZP_03216459.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|194456049|gb|EDX44888.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|199602293|gb|EDZ00839.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205332636|gb|EDZ19400.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 618

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 14/268 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +A I   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  L  +GV    V +SP+    S    ++P+  QMMQ  ++  Y  F+ LV+++R 
Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        +  +      
Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556

Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284
               + +++ S  ++L + I  M    +
Sbjct: 557 LDMVMDSMTGSVRAMLPEAIQAMLPAPL 584



 Score = 97.0 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 99/282 (35%), Gaps = 40/282 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           +  V + +    ++ L LV + +       S+ E  +     + I G I D         
Sbjct: 19  LNLVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90
                               +++  I +   D + T +++ L +  G+       I +A+
Sbjct: 79  ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  VS +R I   +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             + DG       T   A    L+D +    +V ++L     
Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300


>gi|224584189|ref|YP_002637987.1| protease 4 [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|224468716|gb|ACN46546.1| protease IV [Salmonella enterica subsp. enterica serovar Paratyphi
           C strain RKS4594]
 gi|322714354|gb|EFZ05925.1| protease IV [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 618

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 14/268 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +A I   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  L  +GV    V +SP+    S    ++P+  QMMQ  ++  Y  F+ LV+++R 
Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        +  +      
Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556

Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284
               + +++ S  ++L + I  M    +
Sbjct: 557 LDMVMDSMTGSVRAMLPEAIQAMLPAPL 584



 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 99/282 (35%), Gaps = 40/282 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           +  V + +    ++ L LV + +       S+ E  +     + I G I D         
Sbjct: 19  LNLVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90
                               +++  I +   D + T +++ L +  G+       I +A+
Sbjct: 79  ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  VS +R I   +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             + DG       T   A    L+D +    +V ++L     
Sbjct: 259 QAIIDGLTSVGGDTAKYAFDHKLVDALASSADVEKALTKQFG 300


>gi|16760600|ref|NP_456217.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29141640|ref|NP_804982.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|56413719|ref|YP_150794.1| protease 4 [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|168463310|ref|ZP_02697241.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168821937|ref|ZP_02833937.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194443380|ref|YP_002040552.1| protease 4 [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|197250444|ref|YP_002146744.1| protease 4 [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197362642|ref|YP_002142279.1| protease 4 [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|207857196|ref|YP_002243847.1| protease 4 [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|213028304|ref|ZP_03342751.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
 gi|213162980|ref|ZP_03348690.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213647253|ref|ZP_03377306.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
 gi|213850391|ref|ZP_03381289.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
 gi|238910887|ref|ZP_04654724.1| protease 4 [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
 gi|289829513|ref|ZP_06547115.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|81514303|sp|Q8Z6F3|SPPA_SALTI RecName: Full=Protease 4; AltName: Full=Endopeptidase IV; AltName:
           Full=Protease IV; AltName: Full=Signal peptide peptidase
 gi|25290100|pir||AB0711 protease IV (EC 3.4.21.-) [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16502896|emb|CAD02059.1| protease IV [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29137268|gb|AAO68831.1| protease IV [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|56127976|gb|AAV77482.1| protease IV [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. ATCC 9150]
 gi|194402043|gb|ACF62265.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|195634238|gb|EDX52590.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197094119|emb|CAR59619.1| protease IV [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. AKU_12601]
 gi|197214147|gb|ACH51544.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|205341603|gb|EDZ28367.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|206708999|emb|CAR33329.1| protease IV [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|320086223|emb|CBY95997.1| protease IV [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 618

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 14/268 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +A I   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  L  +GV    V +SP+    S    ++P+  QMMQ  ++  Y  F+ LV+++R 
Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        +  +      
Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556

Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284
               + +++ S  ++L + I  M    +
Sbjct: 557 LDMVMDSMTGSVRAMLPEAIQAMLPAPL 584



 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +       S+ E  +     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90
                               +++  I +   D + T +++ L +  G+       I +A+
Sbjct: 79  ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  VS +R I   +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             + DG       T   A    L+D +    +V ++L     
Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300


>gi|319897159|ref|YP_004135354.1| protease iv (signal peptide peptidase) [Haemophilus influenzae
           F3031]
 gi|317432663|emb|CBY81026.1| protease IV (signal peptide peptidase) [Haemophilus influenzae
           F3031]
          Length = 616

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 128/257 (49%), Gaps = 14/257 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGS 79
           +  +++   +A + + G I D +          +   + +   D+S  A+++ ++SPGGS
Sbjct: 316 TPQDNSPNKIAVVNVEGTIIDGESDEENAGGDTIARILRKAQDDNSVKAVVLRVNSPGGS 375

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           A+A E I +  + ++   KPVI  +  MAAS GY IS  ++ I+A   ++ GSIG+   +
Sbjct: 376 AFASEMIRQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFAMF 435

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P  +  + K+GV+   V ++ +    + FS +      + Q  ++  Y  F+ +VS+ R 
Sbjct: 436 PTFENSIKKIGVNADGVSTTELANTSA-FSPLAKPVQDIYQTEIEYGYDRFLEIVSKGRQ 494

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           +   +   L+ G++W G++A +  L+D +G   E       L   +    ++D++     
Sbjct: 495 LSKTQVDKLAQGQVWLGSDAFQNDLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE--- 551

Query: 259 WFCDLKNLSISSLLEDT 275
           WF D     IS+LL DT
Sbjct: 552 WFTDDNVSLISTLLRDT 568



 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 110/285 (38%), Gaps = 44/285 (15%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA----RIAIRGQIEDSQE------- 52
            ++ +    + L  V L V   S+SS  + ++  +      + + G + D+++       
Sbjct: 14  FIRDLVMNVMFLGFVLLLVAIISFSSGGKKSTTLIGEGALLLNLDGYLADNRDETLRWQD 73

Query: 53  ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93
                             ++  I++   D     L++ L+   G    A + I  AI+  
Sbjct: 74  ALNELNGKHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAIRHF 133

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K+    +    +  +   Y ++  ++ I       V   G+  +  Y K  LDKL V+  
Sbjct: 134 KDAGKAVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF  ++++ +A   MQ  +   ++ ++  VSE+R I  D+   L + +
Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYILSVSENRKIKKDRI--LPNAK 251

Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
            +              A++ GL+  V  + ++ + L AL    + 
Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTHVVTRLDLEKKLTALFGKNAD 296


>gi|268317676|ref|YP_003291395.1| signal peptide peptidase SppA, 67K type [Rhodothermus marinus DSM
           4252]
 gi|262335210|gb|ACY49007.1| signal peptide peptidase SppA, 67K type [Rhodothermus marinus DSM
           4252]
          Length = 604

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 66/256 (25%), Positives = 120/256 (46%), Gaps = 1/256 (0%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGG 78
              V         +     V    + G++  S+ LI  +E   + +   A+++ ++SPGG
Sbjct: 307 IAVVYAVGTIVPGKSQQEPVPVPFLGGRMLGSETLIAALEEARQSERVKAVVLRINSPGG 366

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           SA A EA+++AI++    KPVI  + ++AAS GY IS A++ IVA   ++ GSIGV+   
Sbjct: 367 SAAASEAMWQAIRRTAEEKPVIVSMGDVAASGGYWISTAADTIVADPLTITGSIGVIGML 426

Query: 139 PYVKPFLDK-LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
                  +  +G++   +++SP     S      P  V+ +Q  + ++Y  F++ VS++R
Sbjct: 427 LNAGGLFENKIGITYDLLRTSPYADMFSGLVPPEPYEVERLQQTIMATYRTFLQKVSQAR 486

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
            +P D    +  GR+W G  A ++GL+DV+GG +                      P   
Sbjct: 487 GLPVDSVDAIGGGRVWIGETAHRIGLVDVLGGLDRAIAIAAEKAGLAPGTYRIRVLPRPR 546

Query: 258 YWFCDLKNLSISSLLE 273
            +   L     +  ++
Sbjct: 547 MFAERLAEQLEARAVQ 562



 Score = 90.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 101/288 (35%), Gaps = 32/288 (11%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTV---------VYFSWSSHVEDNSPHVARIAIRGQI---- 47
           M F+   + +    L  + L           +  +        S  V  I + G I    
Sbjct: 1   MRFLSSLLASILGTLIAIGLVFLFLFLFLMGLATAVEQPPAIRSGSVLVIRLSGPIPEVV 60

Query: 48  --------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
                             +L   +++ + D    A+ + L +P  S  + E +  A+   
Sbjct: 61  SPDPLSRLLLEEPPYGLHDLTHALKKAAADRRIEAVWLRLQNPQLSWASLEEVRTALVDF 120

Query: 94  KNRKPVITEVHEMAASAGYLISCAS--NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           +    ++    E           AS  + + A   S     G      + K  LDKL V 
Sbjct: 121 RASGKLLIASCEDFGMDEATYFLASAADSVFAGPESFFEFNGFYLTAEFYKRLLDKLEVE 180

Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL-S 208
            + V++   K+   PF    ++ +    +Q ++D+    F+  V+E+R +  +    L +
Sbjct: 181 AQVVRAGAFKSAGEPFVREHLSEENRLQLQALLDAYNRRFLETVAEARGLSVEDVNRLAT 240

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           +  + +  EA + GL+D +    ++ + L          K++  +  +
Sbjct: 241 EQLLLSAEEAVQAGLLDGLRDAGQIERMLKTHLGYGPDEKLRRVSLRQ 288


>gi|17231505|ref|NP_488053.1| protease IV [Nostoc sp. PCC 7120]
 gi|17133148|dbj|BAB75712.1| protease IV [Nostoc sp. PCC 7120]
          Length = 273

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/260 (26%), Positives = 129/260 (49%), Gaps = 5/260 (1%)

Query: 36  PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
             +ARI I G I     + ++E ++ +       AL++ + SPGG+    + I+ A++++
Sbjct: 11  KQIARIEITGAIASGTRKRVLEALKTVEE-RKFPALLLRIDSPGGTVGDSQEIYSALKRL 69

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           + +  ++     ++AS G  I   +  I+A   ++ GSIGV+ +   ++  LDK+GVS K
Sbjct: 70  REKIKIVASFGNISASGGVYIGMGAEHIMANPGTITGSIGVILRGNNLERLLDKIGVSFK 129

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
            +KS P K   S   E+      ++Q+++D+SY  FV+ V+E R++  DK    +DGRI+
Sbjct: 130 VIKSGPYKDILSFDRELTEPEQDILQELIDTSYQQFVQTVAEGRSLAVDKVKSFADGRIF 189

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS--SL 271
           TG +A ++G++D +G +EE  +    L      +        +      +   S    S 
Sbjct: 190 TGQQALELGVVDRLGTEEEARRWTAELVGLDPEKTPCYTLEERKPLLSRVLPGSRKGYSR 249

Query: 272 LEDTIPLMKQTKVQGLWAVW 291
           L  +I  ++         +W
Sbjct: 250 LGASIDWLEFEMSTSGLPLW 269


>gi|268678929|ref|YP_003303360.1| signal peptide peptidase SppA, 36K type [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268616960|gb|ACZ11325.1| signal peptide peptidase SppA, 36K type [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 286

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 119/240 (49%), Gaps = 2/240 (0%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63
           +   I+  +  +  + L V+ F   S  E  +P++A + + G+I + +E++E I++   D
Sbjct: 15  IFTYIQNHFKAMLFLLLLVLIF--GSQDELKTPNLAIVKLEGEILNVEEILENIDKAQND 72

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
           ++   +++ + SPGG+      +  A++++  +KPV+        S  Y  S  SN I+A
Sbjct: 73  ENIKGVLLHVDSPGGALAPSIELSMAVKRLAEKKPVVAYAGGSMTSGSYYASIWSNYIIA 132

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
              + +GSIGVLFQ P V     KLG+S + + +   K   +   E   K    +++++D
Sbjct: 133 NPGAFIGSIGVLFQAPNVAELAKKLGISEQVLSAGEYKQMGTFTREWTQKERGALKNLID 192

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
            +Y  FV+ V+ +R +   K    ++ +++  ++A  V LID +G        +  L   
Sbjct: 193 DAYDLFVKDVATARGLNLAKPDEFANAQVFIASKALNVHLIDEIGSLSSAKTKVEELANI 252


>gi|321223920|gb|EFX48983.1| Protease IV [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 618

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/268 (26%), Positives = 122/268 (45%), Gaps = 14/268 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +A I   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 ETPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  L  +GV    V +SP+    S    ++P+  QMMQ  ++  Y  F+ LV+++R 
Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        +  +      
Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556

Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284
               + +++ S  ++L +TI  M    +
Sbjct: 557 LDMVMDSMTGSVRAMLPETIQAMLPAPL 584



 Score =  100 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +       S+ E  +     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90
                               +++  I +   D + T +++ L +  G+       I +A+
Sbjct: 79  ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  VS +R I   +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             + DG       T   A    L+D +    +V ++L     
Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300


>gi|310767792|gb|ADP12742.1| protease 4 [Erwinia sp. Ejp617]
          Length = 618

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/268 (26%), Positives = 118/268 (44%), Gaps = 14/268 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGS 79
                +  +VA I   G I D +E             I     D    A++  ++SPGGS
Sbjct: 319 KDNGSSDGNVAVILANGAIMDGEEAPGSVGGDTTALEIRAARLDPKIKAIVFRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   K   KPV+  +  MAAS GY +S  +N I+A+  +L GSIG+    
Sbjct: 379 VTASETIREELAAAKEAGKPVVVSMGGMAASGGYWVSTPANYIIASPNTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    +    + P+  QMMQ  +D  Y  F+ LV++SRN
Sbjct: 439 NTVESSLDAIGVHTDGVATSPLADV-ASTKALPPEVQQMMQLSIDKGYQNFIGLVAKSRN 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG++AK  GLID +G  ++       L       ++  +      
Sbjct: 498 KTSEEIDKIAQGHVWTGSDAKAKGLIDALGDFDDAVAKAAELAKLDK-PQLSWYQGEPGL 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQG 286
                  + +S+     +P   +  +  
Sbjct: 557 LDMLFSQVDVSAH--AALPATLKAYLPA 582



 Score = 97.0 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 97/286 (33%), Gaps = 40/286 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +   +++L +V    ++F    +            + + G + D         
Sbjct: 19  LNFVREFVLNLFLILLIVVALGLWFQLHNAGTPAATQKGALVVNLSGAVVDKPSVSNKFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               ++++ I +   D + T +++ L    G      + I +A+
Sbjct: 79  KIGRQLLGASSGRLKENSLFDVVDAIRQAKDDTNITGMVLDLRHFAGGDQPSLQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    I    E  + A Y ++  +N I  +    V   G      Y K  +DKL +
Sbjct: 139 REFRDGGKPIFATGESYSQAQYYLASFANKIYLSPQGNVDLHGFATNSLYYKTLIDKLKI 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF    ++P+A       V   +  ++ +++ +R I  D+     
Sbjct: 199 SSHVFRVGTYKSAVEPFLRDNMSPEARDADGRWVGELWQNYLNMLAANRQITVDQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
                 L      T   AK+  L+D +     V   L         
Sbjct: 259 QGVLNGLQKLGGDTAQYAKENKLVDELASSSRVEHELVKTFGWDKE 304


>gi|262393686|ref|YP_003285540.1| protease IV [Vibrio sp. Ex25]
 gi|262337280|gb|ACY51075.1| protease IV [Vibrio sp. Ex25]
          Length = 616

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 66/274 (24%), Positives = 123/274 (44%), Gaps = 13/274 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           +       +           +A +   G I D            +   + +   D+   A
Sbjct: 307 IGYYDYLATIRPDYTLPQHDIAVVLASGAIMDGQQPRGTVGGDTVASLLRQARNDEKVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   ++ + +  KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEVEALKQAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +    KLG++   V +SP  +     + ++  A Q+ Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGFSKLGINTDGVGTSPF-SGDGITTGLSDGASQVFQLGIEHGYK 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-- 245
            F+ LV E+R++  ++   ++ GR+WTG +A   GL+D +G  ++  +    L       
Sbjct: 486 RFISLVGENRDMSLEEVDNVAQGRVWTGQDALSFGLVDQMGDFDDAVELAAKLANVTDYG 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
           I  +++   P   +  +       SL  D   L+
Sbjct: 546 IYWVEEPLSPTELFLQEFMKQVKVSLGIDATSLL 579



 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 91/284 (32%), Gaps = 37/284 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + F+   +     +L +      + ++              + + G I + +        
Sbjct: 19  ITFIRLALANLIFLLMIAVFYFAFTYTGDGQPVVEKESALVMNLSGPIVEQRRYVNPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93
                            ++++ I     D   + L+++L   P  +      I +A+ + 
Sbjct: 79  FAGSLLGNELPKENVLFDIVDTIRYAKDDPKVSGLVLALRDMPETNLTKLRYIAKALNEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ +  A    V   G      Y K  L+KL VS  
Sbjct: 139 KASGKPVYAVGDFYNQSQYYLASYADKVYLAPDGGVLIKGYSAYSMYYKTLLEKLDVSTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF   +++  A +     V   +  FV  V+ +RNI         D  
Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESATRWVTQLWSAFVDDVTTNRNIDAKVLNPTMDEL 258

Query: 212 IW--------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           I             A K+GL+D +  ++++              
Sbjct: 259 IDEMKSVDGDLAQLAVKLGLVDELATRQDIRTLFAKQFGSDGKD 302


>gi|198245686|ref|YP_002215831.1| protease 4 [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197940202|gb|ACH77535.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326623578|gb|EGE29923.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 618

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 14/268 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +A I   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRINSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  L  +GV    V +SP+    S    ++P+  QMMQ  ++  Y  F+ LV+++R 
Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        +  +      
Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556

Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284
               + +++ S  ++L + I  M    +
Sbjct: 557 LDMVMDSMTGSVRAMLPEAIQAMLPAPL 584



 Score = 99.3 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +       ++ E  +     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQIGNGNNSEQTARGALLLDISGVIVDKPSTNHRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90
                               +++  I +   D + T +++ L +  G+       I +A+
Sbjct: 79  ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  VS +R I   +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             + DG       T   A    L+D +    +V ++L     
Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300


>gi|154148512|ref|YP_001406767.1| signal peptide peptidase SppA, 36K type [Campylobacter hominis ATCC
           BAA-381]
 gi|153804521|gb|ABS51528.1| signal peptide peptidase SppA, 36K type [Campylobacter hominis ATCC
           BAA-381]
          Length = 291

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 62/277 (22%), Positives = 129/277 (46%), Gaps = 2/277 (0%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63
           +L  I   +  +  + L  + F      E    ++A I +   I D+ +++E+I   S +
Sbjct: 14  ILGFINKYFKAMIFLLLVYLIFFTGQSDEIEQANLAEIRLNDAIMDANDVLEKIYASSDN 73

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
           ++  A++ ++ SPGG+      I +AI+++  +KPVI       AS  YL    +  I+A
Sbjct: 74  ENIKAVLFNIDSPGGALSPSVEISKAIKELNEKKPVIVYASGTMASGSYLSGVWARKILA 133

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
            E S +GSIGV+ Q   ++   +K+G+S ++VK+   K   +     N    + +Q++VD
Sbjct: 134 NEGSFIGSIGVIMQGANIENLANKIGISEQTVKAGEYKEAGTFMRAWNENERESLQNLVD 193

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
            SY +FV  V+ +R++  D     ++ R++   +A K+GL+D +   +        +   
Sbjct: 194 KSYSFFVNEVANARHLNIDNNETWANARVFLADDALKLGLVDEISTYKRAKNETEKISGV 253

Query: 244 QSIRKIKD--WNPPKNYWFCDLKNLSISSLLEDTIPL 278
            +    ++  +           K+  + +     + +
Sbjct: 254 LNPVWQEEPFYEKMLKRLETSTKSQILGTFTNKILAI 290


>gi|167552353|ref|ZP_02346106.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205322985|gb|EDZ10824.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 618

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 14/268 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +A I   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRINSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  L  +GV    V +SP+    S    ++P+  QMMQ  ++  Y  F+ LV+++R 
Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        +  +      
Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556

Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284
               + +++ S  ++L + I  M    +
Sbjct: 557 LDMVMDSMTGSVRAMLPEAIQAMLPAPL 584



 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +       S+ E  +     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90
                               +++  I +   D + T +++ L +  G+       I +A+
Sbjct: 79  ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  VS +R I   +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             + DG       T   A    L+D +    +V ++L     
Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300


>gi|218708935|ref|YP_002416556.1| protease IV [Vibrio splendidus LGP32]
 gi|218321954|emb|CAV17952.1| Protease IV (Endopeptidase IV) [Vibrio splendidus LGP32]
          Length = 616

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 126/274 (45%), Gaps = 16/274 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
             +   S  VA I   G I D                + +   DD   A+++ + SPGGS
Sbjct: 318 PDLTSESHDVAVIVASGAIMDGKQPRGTVGGDTTAALLRQARNDDKVKAVVLRVDSPGGS 377

Query: 80  AYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           A+A E I   I+ + +  KPV+  +  +AAS GY IS  ++ I+A  T+L GSIG+    
Sbjct: 378 AFASEVIRNEIEAIKQAGKPVVVSMSSLAASGGYWISMGADKILAQPTTLTGSIGIFSVI 437

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  L+ +GV    V +SP        + ++  A    Q  +++ Y  F+ LV E+R 
Sbjct: 438 TTFEKGLNDIGVYTDGVGTSPFSGLGIT-TGLSEGAKDAFQMGIENGYRRFISLVGENRG 496

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256
           +  D    ++ GR+WTG +A + GL+D +G  ++   +  +L   +  +I  +++     
Sbjct: 497 MEVDAVDKIAQGRVWTGQDAIEKGLVDEIGDFDDAITAAASLAELETYNIYWVEEPLSAT 556

Query: 257 NYWFCDLKN---LSISSLLEDTIPLMKQTKVQGL 287
             +  +  N   +SI   ++  IP   Q   Q L
Sbjct: 557 ELFIQEFMNQVQMSIGLDIQSMIPSSLQPVTQQL 590



 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 96/282 (34%), Gaps = 37/282 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + FV   +   + +LS+  +  VYF S ++           + + G I +          
Sbjct: 19  ITFVRLALVNLFFLLSIAIIYFVYFHSDTTQPTVPQESALVLNLSGPIVEQSRYINPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            +++E I     DD  T ++++    P  +      I +A+ + 
Sbjct: 79  VTGSLLGKDLPKENVLFDIVETIRYAKDDDKVTGIVLALKELPETNLTKLRYIAKALNEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     I  V +    + Y ++  +  +  +    V   G      + K  L+KL V+  
Sbjct: 139 KATGKPIYAVGDFYNQSQYYLASYATKVFLSPDGGVLLKGYSAYSLFYKTLLEKLDVNTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL------ 205
             +    K+   PF   +++  A +     +   +  +V  VS +R I            
Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESASRWLGQLWGAYVDDVSNNRQIDAKTLNPSMDSF 258

Query: 206 --VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
              L          A+K+GL+D +  +++V   L  +     
Sbjct: 259 LKDLESVDGDIAKLAEKLGLVDELATRQQVRLELADVFGSDG 300


>gi|322616683|gb|EFY13592.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322619801|gb|EFY16675.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322622369|gb|EFY19214.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322627893|gb|EFY24683.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322633009|gb|EFY29752.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322636745|gb|EFY33448.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322641229|gb|EFY37870.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322645218|gb|EFY41747.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322650160|gb|EFY46574.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322655734|gb|EFY52036.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322660059|gb|EFY56298.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322665374|gb|EFY61562.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322669639|gb|EFY65786.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322673558|gb|EFY69660.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322677484|gb|EFY73548.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322679851|gb|EFY75890.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322687323|gb|EFY83295.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323192441|gb|EFZ77671.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323199518|gb|EFZ84611.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323204132|gb|EFZ89146.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323208750|gb|EFZ93688.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323210920|gb|EFZ95784.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323217726|gb|EGA02441.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323220281|gb|EGA04736.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323223877|gb|EGA08177.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323229529|gb|EGA13652.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323232752|gb|EGA16848.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323240209|gb|EGA24253.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323242803|gb|EGA26824.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323249119|gb|EGA33038.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323254380|gb|EGA38197.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323257169|gb|EGA40872.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323263510|gb|EGA47038.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323267077|gb|EGA50562.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323272181|gb|EGA55595.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 618

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 14/268 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +A I   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  L  +GV    V +SP+    S    ++P+  QMMQ  ++  Y  F+ LV+++R 
Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        +  +      
Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556

Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284
               + +++ S  ++L + I  M    +
Sbjct: 557 LDMVMDSMTGSVRAMLPEAIQAMLPAPL 584



 Score =  100 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 100/282 (35%), Gaps = 40/282 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +       S+ E  +     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90
                               +++  I +   D + T +++ L +  G+       I +A+
Sbjct: 79  ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    I  V E  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPIFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  VS +R I   +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADNRWIGELWQNYLHTVSANRQISPQQLFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             + DG       T   A    L+D +    +V ++L     
Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300


>gi|213427777|ref|ZP_03360527.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
          Length = 618

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 14/268 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +A I   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  L  +GV    V +SP+    S    ++P+  QMMQ  ++  Y  F+ LV+++R 
Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        +  +      
Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556

Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284
               + +++ S  ++L + I  M    +
Sbjct: 557 LDMVMDSMTGSVRAMLPEAIQAMLPAPL 584



 Score = 99.7 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +       S+ E  +     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90
                               +++  I +   D + T +++ L +  G+       I +A+
Sbjct: 79  ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  VS +R I   +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             + DG       T   A    L+D +    +V ++L     
Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300


>gi|157164394|ref|YP_001467221.1| signal peptide peptidase SppA, 36K type [Campylobacter concisus
           13826]
 gi|157101431|gb|EAT99328.2| signal peptide peptidase SppA, 36K type [Campylobacter concisus
           13826]
          Length = 287

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 65/271 (23%), Positives = 125/271 (46%), Gaps = 4/271 (1%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63
           + K I   +  L    L +++F ++   +   P++ARI I G I D+ E+++ +E+   D
Sbjct: 14  IFKFINNYFKALI--FLLILFFIFAPDSKIKEPNLARIDITGTIVDTSEILDELEKARLD 71

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
            +   +++ + SPGG+      +  A++++K  K V+       AS  Y     ++ I+A
Sbjct: 72  SNIKGVLLYIDSPGGALSPSVELAMAVKRLKESKKVLAYAAGNMASGSYYAGVNADAIIA 131

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
              + +GSIGV+ Q   ++     LGVS + VK+   K   +     + +  + +Q +V+
Sbjct: 132 NPGAFIGSIGVIMQGANIENLAKNLGVSEQVVKAGEFKEAGTFMRSWSKQERESLQGLVN 191

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
            +Y  FV  V+E+RN+   K    ++ R++    A K+GLID +G   +    L  + + 
Sbjct: 192 DAYMLFVSDVAEARNLDIKKKDEWANARVFLAHNALKMGLIDSLGSYIDAQNELAKMSLV 251

Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLED 274
                +    P             I+SL   
Sbjct: 252 DE--PVWQEKPQLEKIMEKFTKQGINSLFNA 280


>gi|227485721|ref|ZP_03916037.1| S49 family peptidase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236276|gb|EEI86291.1| S49 family peptidase [Anaerococcus lactolyticus ATCC 51172]
          Length = 327

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 68/269 (25%), Positives = 136/269 (50%), Gaps = 8/269 (2%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
              +++  + +I++ G I+  +    +I  ++  ++D +   +I++++SPGGS Y  E I
Sbjct: 54  QGTNSAEKIRKISLEGVIQGDENSEFVISELKDAAKDPTTKGVILTVNSPGGSVYVSEKI 113

Query: 87  FRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
            + I+ +K +K  +   + EMAAS GY IS  ++ I A+  +L GSIGV+      +   
Sbjct: 114 AKEIKSLKAKKIPVYSVMEEMAASGGYYISAPTDRIYASNETLTGSIGVIMGGRSFQGLF 173

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           +K G+  ++V S  MK   +   ++N +    +Q +VDS++  FV++VSE R++      
Sbjct: 174 EKYGIKEQNVVSGKMKDTGTMGRDLNAEEKAYLQALVDSAFGRFVKIVSEGRHMSEKDVR 233

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK---NYWFCD 262
            L+DGR++ GA+A K GL+D +G  +     +       +  ++ + +         F  
Sbjct: 234 KLADGRVYDGAQAVKNGLVDKIGDIDMAIADMIKENKL-NDPQVVESSYANISLRQLFQK 292

Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
           + +L  SS     +  + +   Q    ++
Sbjct: 293 VSDLKKSSSDLAILKELMEENRQAPMYIY 321


>gi|206601560|gb|EDZ38043.1| Signal peptide peptidase, SppA [Leptospirillum sp. Group II '5-way
           CG']
          Length = 349

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 63/279 (22%), Positives = 116/279 (41%), Gaps = 19/279 (6%)

Query: 34  NSPHVARIAIRGQIEDSQE---------------LIERIERISRDDSATALIVSLSSPGG 78
               +  + I G I D                  +   + + + D     +++ + S GG
Sbjct: 64  ARDKLLLVPINGFIGDQTSRGLPFLGGRDDTVTRIRATLRKAAEDPRVRGIVLLIDSAGG 123

Query: 79  SAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           S  A + ++  +++ K +   PV+  + +M AS  Y +S A++ +    TS+VGSIGV+ 
Sbjct: 124 SVTASDRVYHLVREFKQKSGIPVMAMIGDMGASGAYYVSVAADEVWTHPTSVVGSIGVVI 183

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
               V   + K+GV  +++ S   K   SP   +  K   + Q ++   Y  F  +VS +
Sbjct: 184 FNVGVTGLMKKIGVEDRTLSSGAEKEMGSPLKPMTDKDRSLFQGLISDLYTQFFDIVSRN 243

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP- 255
           R I  D    L+DGRI+T  +A K  L+D +G ++++ + L  L   +    I+   P  
Sbjct: 244 RQIAPDILKPLADGRIFTARQALKNHLVDRIGYRDDLIRHLKRLMHVKEFEVIRYREPFL 303

Query: 256 -KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
                F               +  M       +  +W+P
Sbjct: 304 AATGIFGSESPADSPMASAGRLAGMLTKSGPTMLYLWDP 342


>gi|325104824|ref|YP_004274478.1| signal peptide peptidase SppA, 67K type [Pedobacter saltans DSM
           12145]
 gi|324973672|gb|ADY52656.1| signal peptide peptidase SppA, 67K type [Pedobacter saltans DSM
           12145]
          Length = 586

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 111/249 (44%), Gaps = 11/249 (4%)

Query: 29  SHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGS 79
                +S  +A I   G+I           S+ +   I +   DD   A+++ ++SPGGS
Sbjct: 297 KPENTSSNRIAVIYANGEINSGEGDQNTIGSEGISRAIRKARLDDKVKAIVLRVNSPGGS 356

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           + A + I+R     K  KP I  + + AAS GY ISCA++ I A   ++ GSIGV    P
Sbjct: 357 SLASDVIWRETVLAKKEKPFIVSMGDYAASGGYYISCAADSIFAEPNTITGSIGVFAILP 416

Query: 140 YVKPFLDK-LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
            +KPFL+  LG++   VK+            +     +++Q  V+  Y  F + V+E R 
Sbjct: 417 NLKPFLNNKLGITFDGVKTGEFADFGQVTRPLTSAEKELLQQEVNKIYFDFTKRVAEGRK 476

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           I       +  GR+WTG +A  +GL+D +G  E+      A        +I  +   K  
Sbjct: 477 ISQSYVDSIGQGRVWTGKQAIDLGLVDKIGHIED-AIKSAAKKAKIEDYRIMSYPEKKEG 535

Query: 259 WFCDLKNLS 267
               L    
Sbjct: 536 LLSILDKSG 544



 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 97/271 (35%), Gaps = 26/271 (9%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIR-----------------GQ 46
           +   I    + +S++T  ++  S  S VE     +  I +                  G 
Sbjct: 15  IFLSIVLFIIFISIITAGLINSSN-SKVEIKDNSILHINLNYPILERANPNPLEDLEIGP 73

Query: 47  I-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
           I         ++++ I     DD    + +  S         E I   +   K     + 
Sbjct: 74  IKKEKTLGLNDILKSIRYAKEDDQIKGIYLDASMVQAGMATVEEIRDELLNFKKSGKFVI 133

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
              E+     Y ++ A++ +       +   G+     + K  L+KL +  + +K    K
Sbjct: 134 AYSEVYTQKSYYLASAASKVYLNPVGYLELKGLSSNTMFFKGALNKLEIEPQVIKVGTFK 193

Query: 162 AEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEA 218
           +   PF   +++      M  +++S +  F   ++  R +  D  + +++  ++ T  +A
Sbjct: 194 SAVEPFILDKMSDANKLQMSSILNSIFEDFTGKIAIERKLAKDSVVSIANLLKVRTAEDA 253

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
            K  L+D +  ++EV   L +       + +
Sbjct: 254 LKYKLVDALKYKDEVLDELKSKTGIDKKKNL 284


>gi|90417463|ref|ZP_01225386.1| signal peptide peptidase SppA [marine gamma proteobacterium
           HTCC2207]
 gi|90330704|gb|EAS45983.1| signal peptide peptidase SppA [marine gamma proteobacterium
           HTCC2207]
          Length = 616

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 73/279 (26%), Positives = 123/279 (44%), Gaps = 20/279 (7%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSS 75
            S   +V    P +A +   G I D            L E    I  +D   A+++ + S
Sbjct: 313 LSSLKNVNKGRPEIAVVVASGSIIDGNQPEGTIGGDTLAEMFSAIEDEDQVKAVVLRVDS 372

Query: 76  PGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           PGGSA+A + I  +I  ++ +  PV+  +   AAS GY I+  S+ I+A  T++ GSIGV
Sbjct: 373 PGGSAFASDVIRDSIASLRKKNIPVVISMGSYAASGGYWIATESDKILALSTTITGSIGV 432

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
               P  +  L  +G+    V ++ +         + P+A  +MQ  V+  Y  F+ LV+
Sbjct: 433 FGVIPTFEDSLSAMGIYSDGVGTTNIAGMMQLSRAMTPEAEMIMQSGVEHVYGRFLTLVA 492

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           ++R         ++ GR+WTG +A ++GLID +G   +       L       K+     
Sbjct: 493 DARESTPSAIHKIAQGRVWTGKKALELGLIDELGDLNDAIAIAATLAGV-GDYKVNYRRK 551

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
           P ++    +    IS  +   +  M      GL + W P
Sbjct: 552 PLSFMEQVMME--ISGNVNAAVSAM------GLQS-WLP 581



 Score = 88.1 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 100/270 (37%), Gaps = 35/270 (12%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------- 51
           ++ + +  V+L  + +    F            V  +A  G + D +             
Sbjct: 23  IRYMISLVVVLFFIAVVAGMFV-DDIQPMPERGVLYLAPSGTLVDQRSYIDPVSEIFSPP 81

Query: 52  ----------ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVI 100
                     ++++ ++    D+  T +++      G S    E I  A+Q+ K     I
Sbjct: 82  GQRDAETLVRDMVQALDHAQYDERITHVLLDTDYISGGSIAKLEEISAALQRFKQSGKPI 141

Query: 101 TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160
             + +  + + Y ++  ++ I+      V   G      Y K  LDKL +++   +    
Sbjct: 142 IAIGDNFSQSQYFLAAHADEIIMNPLGSVMLTGFGSYSSYYKEALDKLKINVHIFRVGKY 201

Query: 161 KAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW----- 213
           K+   PF  + ++ +A    +D++DS + ++   V + R +P      L++         
Sbjct: 202 KSAVEPFLGTGMSEEARADRRDLLDSLWQFYTSRVEQLRGLPKGALNDLANNMHLKLAEE 261

Query: 214 ---TGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                A A + GL+D +  + E    L  +
Sbjct: 262 NGDIAALALQQGLVDRIATRSETKAHLLQI 291


>gi|284032927|ref|YP_003382858.1| signal peptide peptidase SppA, 36K type [Kribbella flavida DSM
           17836]
 gi|283812220|gb|ADB34059.1| signal peptide peptidase SppA, 36K type [Kribbella flavida DSM
           17836]
          Length = 552

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/272 (26%), Positives = 123/272 (45%), Gaps = 16/272 (5%)

Query: 34  NSPHVARIAIRGQIE---------------DSQELIERIERISRDDSATALIVSLSSPGG 78
             P VA I + G I                 S  +   +  ++ DD   A+++ + SPGG
Sbjct: 262 PKPTVAVIRVNGGITVGRSSGGGPLGSPRSGSDTITAALRAVAADDKVKAVVLRIDSPGG 321

Query: 79  SAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           S  A +AI   + ++++  KPVI  +  +AAS GY ++  ++++VA   ++ GSIGVL  
Sbjct: 322 SYVASDAIRHEVLRLRSTGKPVIASMGSVAASGGYFVAMPADVVVAQPGTITGSIGVLSG 381

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
              V+  L ++G++ ++V         S   E +P+  + +++ +D  Y  FV   +E R
Sbjct: 382 KGVVRDALGRIGITQQAVSEGTNARMYSAQEEFSPQQWERLEETLDRIYADFVAKAAEDR 441

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
            +  D+   L+ GR+WTGA+A +  L+D +GG E   Q   A              P + 
Sbjct: 442 GLGVDELEALARGRVWTGADAHRHQLVDELGGFEHALQLACARAGLDRDHIAVTAAPHRT 501

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +        S   L   T PL        L+A
Sbjct: 502 FLDRLRPPTSTDDLAATTQPLTVDGLTTSLYA 533



 Score = 77.7 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 83/222 (37%), Gaps = 7/222 (3%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS- 109
           +EL+  + + + D+    L+  +  P  S    + +  A+   +          E     
Sbjct: 35  RELVVGLRKAAEDEQVVGLVAHVGGPALSLAQVQELRTAVVGFRAAGKRAVAWSESFGEA 94

Query: 110 ----AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--E 163
                 Y ++ A + I    +  +G  GV  Q  +V+  LDK GV  +  K    K   +
Sbjct: 95  GGGTVPYYLATAFDEIWVQPSGELGITGVSVQATFVRGALDKAGVIPQFGKRREYKTAVD 154

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
                E+   A +M   + +S+Y   V  ++  R +  ++   L D         ++ GL
Sbjct: 155 TFTEKEMTGPAREMAARLAESAYEQLVEGIAGERELSVERVRELVDNAPLAAEAGREAGL 214

Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
           +D +G + +V+  L       +   ++ ++        D  +
Sbjct: 215 VDRLGYRSDVYDELEKRFGPTTALLVERYHRRGPRTLHDALD 256


>gi|157375448|ref|YP_001474048.1| acid phosphatase [Shewanella sediminis HAW-EB3]
 gi|157317822|gb|ABV36920.1| Acid phosphatase [Shewanella sediminis HAW-EB3]
          Length = 612

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 63/268 (23%), Positives = 116/268 (43%), Gaps = 15/268 (5%)

Query: 35  SPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
              V  I  +G I            +   + + +   D+   A+++ + SPGGSA+A E 
Sbjct: 324 EDTVGIIVAKGTILNGNQPAGQIGGESTSKLLRKARFDEQVKAVVLRVDSPGGSAFASEQ 383

Query: 86  IFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           I + +  +K   KPV+  +   AAS GY IS +++ I A  T+L GSIG+       +  
Sbjct: 384 IRQEVLALKTAGKPVVVSMGSYAASGGYWISASADYIYATPTTLTGSIGIFGMVTTFEDS 443

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L  +G+    V +S           + P+   ++Q  ++  YH F+ LV+  R +  D  
Sbjct: 444 LSSIGIHTDGVATSDWAGISVT-KGLTPEIKSVIQRHIERGYHDFISLVATERGMSLDDV 502

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFCDL 263
             ++ GR+W+G +A ++GL+D +G  +        +   +    +I +        F   
Sbjct: 503 DNIAQGRVWSGKKAVELGLVDELGDLDSAVAKAAKMANLEDFDSQIIEQELSPQELFIQE 562

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWAVW 291
              S ++ L         T ++ L + W
Sbjct: 563 MFASAAAYLPQ---SSTSTVLEQLLSQW 587



 Score = 80.8 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 93/278 (33%), Gaps = 36/278 (12%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------- 51
           ++K+        ++   +V  +    V+ +S     + + G + + +             
Sbjct: 22  IRKLILNIFFFGILAAIIVAMTVEDDVKLDSGSALVLNLSGSVVEQKRQVDPIEAAMKSS 81

Query: 52  ------------ELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRKP 98
                       +++  I+  + D   +++++ +     +     ++I  A+ + K    
Sbjct: 82  KSKDASGELLLADVLNVIDNAALDTRISSIVLDIGHLRWTGISKLQSIGDALTRFKESGK 141

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            I           Y ++  ++ I       V   G+     Y K  L+KL +     +  
Sbjct: 142 PIIAKANWYGQNQYFLASFADTIYLNPQGSVELEGLSRYRQYYKSALEKLKIKAHIFRVG 201

Query: 159 PMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLS 208
             K+   P+   +++P A +   ++++  +  +   V+E+RNI  DK         + L 
Sbjct: 202 TFKSAVEPYIRDDMSPAAKEANTELLNDIWANYETQVAENRNISADKLVLSADQYLIELE 261

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
                +   A  +  +D +   E     +         
Sbjct: 262 RANGKSAEMALNMNWVDELASAEAFRLKMIDTVGKADE 299


>gi|16764646|ref|NP_460261.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|167991889|ref|ZP_02572988.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197262148|ref|ZP_03162222.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|16419812|gb|AAL20220.1| protease IV [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|197240403|gb|EDY23023.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205329812|gb|EDZ16576.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261246504|emb|CBG24314.1| protease IV [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993167|gb|ACY88052.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|301157832|emb|CBW17326.1| protease IV [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912281|dbj|BAJ36255.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|323129566|gb|ADX16996.1| signal peptide peptidase SppA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332988183|gb|AEF07166.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 618

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/268 (26%), Positives = 122/268 (45%), Gaps = 14/268 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +A I   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  L  +GV    V +SP+    S    ++P+  QMMQ  ++  Y  F+ LV+++R 
Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        +  +      
Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556

Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284
               + +++ S  ++L +TI  M    +
Sbjct: 557 LDMVMDSMTGSVRAMLPETIQAMLPAPL 584



 Score =  100 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +       S+ E  +     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90
                               +++  I +   D + T +++ L +  G+       I +A+
Sbjct: 79  ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  VS +R I   +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             + DG       T   A    L+D +    +V ++L     
Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300


>gi|218961332|ref|YP_001741107.1| putative Acid phosphatase [Candidatus Cloacamonas acidaminovorans]
 gi|167729989|emb|CAO80901.1| putative Acid phosphatase [Candidatus Cloacamonas acidaminovorans]
          Length = 819

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 13/240 (5%)

Query: 31  VEDNSPHVARIAIRGQIEDSQEL----------IERIERISRDDSATALIVSLSSPGGSA 80
            +     VA I   G I   +            ++ I +  +D     +I+ + S GGSA
Sbjct: 525 AKPKENLVAVIYASGNIVSGKGTPGQKIAQETSVDLIRKARKDKQYKGIILRVDSGGGSA 584

Query: 81  YAGEAIFRAIQ--KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            A + I R ++  K +N+KP++  +   AAS GY ISC ++ I+A  ++L GSIGV+   
Sbjct: 585 QASDIILRELELAKTENKKPIVVSMGGTAASGGYYISCNADKIIAEPSTLTGSIGVVGLM 644

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR- 197
                   K+ V+  +VK        S       +  QM+   +++ Y  FV  V   R 
Sbjct: 645 FNGTDMFQKIKVNWDTVKKGEHADMVSINRPWTEEEKQMVIRNIENCYDDFVMKVDAGRP 704

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           N+  ++    + GR+WTG +A+K+GL+D +GG E+  +S+  L   +    + D    K 
Sbjct: 705 NMTLEQVKQYAQGRVWTGEQAQKIGLVDELGGLEKAKESMSELIGKKGKLTLVDATTKKE 764



 Score = 80.4 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 89/231 (38%), Gaps = 10/231 (4%)

Query: 32  EDNSPHVARIAIRGQIEDS-QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
                 + +I I    + S + +I+ I++   D     +++   S   S    E +  A 
Sbjct: 292 TAPKYKIGKIKIYDTGDKSIESIIDNIKQAKDDLEIEGILLKNPSFSTSLALQEELVDAF 351

Query: 91  QKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
              K+    +      +        S  ++ I    T  V   G+    PY+K  L  LG
Sbjct: 352 NDFKSSGKKVCFYYDNIGNGGYIFASSIADKIYLNPTGSVDLRGLSISSPYLKNMLASLG 411

Query: 150 VSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY--DKTL 205
           + + + +S   K   + FSE  + P   +  + ++ S Y   ++ +   R          
Sbjct: 412 IEVLNFRSHEYKDAGNMFSEERMTPAEREAYESLLQSLYDQILQRMETGRGDRLVASADE 471

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD----QSIRKIKDW 252
           ++++G  +   +A + GL+D +  ++++ + L          + + + +++
Sbjct: 472 IINEGPYFIANDALEKGLVDALIYEDQLNKQLKKDFKFSSQHKELTEYREY 522


>gi|331005266|ref|ZP_08328658.1| putative peptidase [gamma proteobacterium IMCC1989]
 gi|330420943|gb|EGG95217.1| putative peptidase [gamma proteobacterium IMCC1989]
          Length = 328

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 128/299 (42%), Gaps = 22/299 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYF-----SWSSHVEDNSPHVARIAIRGQIEDSQ-----ELIE 55
           ++    + +   + + VV+      S  +H      HV  + + G I   Q     +L  
Sbjct: 37  RRWGIFFKLFFCIYIVVVFVGVARQSQVTHYASTEEHVGIVYLDGAIAADQTANANDLAS 96

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGY 112
            +     + S+ A+I++++SPGGS      ++  I+++      K +   + ++ AS GY
Sbjct: 97  ALRAAFANTSSKAVILAINSPGGSPVQSGYVYDEIKRLRAIHTDKKLYAVISDLGASGGY 156

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            I+ A++ I A ++SLVGSIGV          ++KLGV  +S  S   K    PF+    
Sbjct: 157 YIAAAADEIYADKSSLVGSIGVTASSFGFVGLMEKLGVERRSYTSGEHKGFLDPFAPQRK 216

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
                 + V+DS++  F+R V E R          +  G IW G +A + GLID +G   
Sbjct: 217 DETIFWESVLDSTHEQFIRAVEEGRGDRLVAGDEDIYSGLIWNGEQALEKGLIDGLGSAG 276

Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
            V +         S+ ++ D+      +    KN  ++  + + +  +    +     +
Sbjct: 277 YVARE------VVSVEQVVDYTVRPTPFEEFSKNFGVA--VGEGVGTILNAVINTPIQL 327


>gi|113970247|ref|YP_734040.1| signal peptide peptidase SppA, 67K type [Shewanella sp. MR-4]
 gi|113884931|gb|ABI38983.1| signal peptide peptidase SppA, 67K type [Shewanella sp. MR-4]
          Length = 614

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 65/270 (24%), Positives = 120/270 (44%), Gaps = 14/270 (5%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                V  I   G I                E + +   D    AL++ + SPGGSA+A 
Sbjct: 322 VEQDSVGIIVASGTILNGSQPAGQIGGDSTAELLRKARFDKHIKALVLRVDSPGGSAFAS 381

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + +  +K   KPV+  +  +AAS GY IS +++ I A  T+L GSIG+       +
Sbjct: 382 EQIRQELLALKAAGKPVVVSMGSLAASGGYWISASADYIFATPTTLTGSIGIFGMITTFE 441

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L  LG+    V +S         + ++P+   ++Q  ++  Y  F+ LV++ R +  +
Sbjct: 442 DSLASLGIHTDGVSTSEWAGLSVTRT-LSPQIESVIQRHIERGYLDFISLVAKERKMTLE 500

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFC 261
           +   ++ GR+W+G +A ++GL+D +G  ++       L        ++ +        F 
Sbjct: 501 QVDSIAQGRVWSGKKALELGLVDELGDIDQAVAKAAKLADLSLFDTRLIEQELTPEQRFV 560

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
                S+S+ L  ++     T ++ + A W
Sbjct: 561 QQMFASVSAYLPASLS--HSTLLEQMLAQW 588



 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/277 (11%), Positives = 90/277 (32%), Gaps = 36/277 (12%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------- 51
           ++K     +    + + ++    S  ++        + + G I D +             
Sbjct: 22  IRKFILNLIFFGFLAIILITIGSSEDIQVEDNSALVLNLAGSIVDQKQQVDPIEAALKQG 81

Query: 52  ------------ELIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVKNRKP 98
                       ++I  I+  + D+  + +++ L+          ++I  A+ + K    
Sbjct: 82  NNGSSDGEILLADIIYVIDNATHDNRISTIVLDLAELKRAGISKLQSIGDALNRFKESGK 141

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            +  +        Y ++  ++ I       V   G+     Y K  L+KL +     +  
Sbjct: 142 KVVAIGNYYEQNQYFLASFADTIYLNPQGSVALDGLSMYNQYFKSALEKLKIKAHIFRVG 201

Query: 159 PMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLS 208
             K+   P+   +++  A +    ++   +  + + V+++R I  +            L 
Sbjct: 202 TFKSAVEPYMRDDMSDAAREASSALLADVWQSYTQTVAQNRQIDANTLVLDSANYLAQLD 261

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
                +   A  +  +D +   EE  + +      + 
Sbjct: 262 KAEGDSATMAINMKWVDTLATDEEFRKVMLDSVGKEK 298


>gi|90579232|ref|ZP_01235042.1| putative protease IV [Vibrio angustum S14]
 gi|90440065|gb|EAS65246.1| putative protease IV [Vibrio angustum S14]
          Length = 615

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 120/262 (45%), Gaps = 12/262 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           ++            + ++  VA +   G I D            +   + +   D+   +
Sbjct: 306 ISYYDYLSMLVDDQKPSNNKVAVVVASGAIVDGKSSQGTAGGDTIAALLRKARFDNDVKS 365

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +I+ + SPGGSA+A E I   +  +K   KPV+  +  +AAS GY IS +++ I+A  T+
Sbjct: 366 VILRVDSPGGSAFASEVIRNEVDALKAAGKPVVVSMSSVAASGGYWISSSADKIIAQPTT 425

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           + GSIG+       +  L+KLGV    V ++P  +       +     ++ Q  VD+ Y 
Sbjct: 426 ITGSIGIFAILTTFEKSLEKLGVYSDGVGTTPF-SGVGVTRALPENVGKVFQLGVDNGYQ 484

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F+ LVS+ R++  ++   ++ GR+WTG +AK+ GL+D +G  +       +L       
Sbjct: 485 RFIGLVSKYRHMSLEQADKIAQGRVWTGKDAKERGLVDELGDFDTAITEAVSLAKV-DDY 543

Query: 248 KIKDWNPPKNYWFCDLKNLSIS 269
           ++     P +      K +S  
Sbjct: 544 QLVWMQQPLSPIQQFFKEMSGE 565



 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/325 (15%), Positives = 111/325 (34%), Gaps = 39/325 (12%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + F  K I     +L +  +   +       E        + + G I + +         
Sbjct: 19  INFARKFILNLIFLLIVGAIIFAFSDNDDSAEKPEASALVLNLSGPIVEQKNYDNPLDSV 78

Query: 52  ----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVK 94
                           +++E I   + D S T L+++  + P  S      I +AIQ+ K
Sbjct: 79  ISDVMGQPPVEQNVLFDIVEAIRTATTDSSITGLVLNLKNMPETSLTKLRYIAKAIQEFK 138

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
                +       + + Y ++  ++ I  +    +   G      Y K  L+KL V+   
Sbjct: 139 ASGKPVYAYGGHYSQSQYYLASYADKIFMSPDGGIMLTGYGTYTLYYKTLLEKLDVTTHV 198

Query: 155 VKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------T 204
            +    K+   P+    ++  A +     +D  +  +   V+++RNI             
Sbjct: 199 FRVGTYKSFVEPYIRDGMSAAAKEANTVWLDQLWDAYTSDVAKNRNIDAKSLTPEMNSFV 258

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI---RKIKDWNPPKNYWFC 261
             L+         +KK+GL+D +  + ++ Q L     D      ++I  ++        
Sbjct: 259 EQLTAVNGDFAQLSKKMGLVDQLVTRPQLSQILIKEFGDNGEHSFKQISYYDYLSMLVDD 318

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQG 286
              + +  +++  +  ++     QG
Sbjct: 319 QKPSNNKVAVVVASGAIVDGKSSQG 343


>gi|196231671|ref|ZP_03130528.1| signal peptide peptidase SppA, 36K type [Chthoniobacter flavus
           Ellin428]
 gi|196224143|gb|EDY18656.1| signal peptide peptidase SppA, 36K type [Chthoniobacter flavus
           Ellin428]
          Length = 345

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 78/282 (27%), Positives = 136/282 (48%), Gaps = 16/282 (5%)

Query: 21  TVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ----------ELIERIERISRDDSATALI 70
            VV    +   +     +A I +RG I  S+          +L  ++E+ + D+   A++
Sbjct: 52  VVVDAKPTKDGKVTDSKIALIYLRGVISSSEPGALGESMVDDLKIQLEQAATDEKVKAVV 111

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVK-----NRKPVITEVHEMAASAGYLISCASNIIVAAE 125
           + + SPGG   A ++I+ A++KV+      +KPV+  +  +AAS GY ISCA   ++A E
Sbjct: 112 LYVDSPGGEVTASDSIYDAVRKVREGGYGKKKPVVVYMGSLAASGGYYISCAGTWLMANE 171

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
           T+L GSIGV+ Q    K    KLG+   + KS   K   S   ++  +    +Q +V  +
Sbjct: 172 TTLTGSIGVIMQSLNYKELFGKLGLQTVTFKSGQFKDMLSGSRDLTQEERDYIQKMVMDT 231

Query: 186 YHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           Y  FV +V++ R +  D+    L+DGR+ +G +A    LI+  G  E+ +     LG  +
Sbjct: 232 YGKFVGIVAKERKLNEDELRHGLADGRVISGKDALAAKLINATGEVEDAYAKAMELGNAR 291

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
               I+  +P K      L   S  + +E  +    + K++ 
Sbjct: 292 GATVIRYESPFKLGKLFRLLGQSEKTSVEVNLANTIRPKLEA 333


>gi|153000814|ref|YP_001366495.1| signal peptide peptidase SppA [Shewanella baltica OS185]
 gi|151365432|gb|ABS08432.1| signal peptide peptidase SppA, 67K type [Shewanella baltica OS185]
          Length = 615

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 64/268 (23%), Positives = 120/268 (44%), Gaps = 14/268 (5%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                V  I   G I            +   E + +   D    AL++ + SPGGSA+A 
Sbjct: 322 VEQDSVGIIVASGTILNGTQPAGQIGGESTAELLRKARFDKHVKALVLRVDSPGGSAFAS 381

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + +  +K   KPV+  +  +AAS GY IS +++ I A  T+L GSIG+       +
Sbjct: 382 EQIRQELLALKAAGKPVVVSMGSLAASGGYWISASADYIFATPTTLTGSIGIFGMITTFE 441

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L  +GV    V +S         + ++P+   ++Q  ++  Y  F+ LV++ R +  +
Sbjct: 442 DSLASIGVHTDGVSTSEWAGLSVTRT-LSPQVEAIIQRHIERGYLDFISLVAKERKMTIE 500

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFC 261
           +   ++ GR+W+G +A ++ L+D +G  +E       L        ++ +        F 
Sbjct: 501 QVDKIAQGRVWSGKKALELSLVDELGDLDEAIAKAAKLADMTLFDTRVIEQELTPEQRFM 560

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                S+SS L  ++   + + ++ + A
Sbjct: 561 QQMFASVSSYLPASLS--QSSMLEQMLA 586



 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 88/273 (32%), Gaps = 36/273 (13%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51
           +K+    +   ++   ++    S  ++        + + G I D +              
Sbjct: 23  RKLILNLIFFGILAAIIISIGSSEDIQVEDNSALVLNLAGSIVDQKQQVDPLEAAFKQGN 82

Query: 52  -----------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRKPV 99
                      +++  I   ++D   + L++             ++I  A+ + K     
Sbjct: 83  NGNADGEILLADVLYVINNAAQDQRISTLVLDLADLKRAGISKLQSIGDALNRFKESGKK 142

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
           +  +        Y ++  ++ I       V   G+     Y K  LDKL +     +   
Sbjct: 143 VVAIGNYYEQNQYFLASFADTIYLNPQGGVSLDGLSMYNQYFKSALDKLKIKAHIFRVGT 202

Query: 160 MKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSD 209
            K+   P+   +++  A +    ++   +  + + V+ +RNI  +            L  
Sbjct: 203 FKSAVEPYMRDDMSDAAREASSALLADVWQSYTQTVAGNRNIEPNSLVPDATTYLAELDK 262

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
               + A A  +  +D +   E+  Q++     
Sbjct: 263 ANGDSAAMAINMKWVDSLATTEDFRQTMLETVG 295


>gi|124515256|gb|EAY56766.1| Signal peptide peptidase, SppA [Leptospirillum rubarum]
          Length = 331

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 62/279 (22%), Positives = 116/279 (41%), Gaps = 19/279 (6%)

Query: 34  NSPHVARIAIRGQIEDSQE---------------LIERIERISRDDSATALIVSLSSPGG 78
               +  + I G I D                  +   + + + D     +++ + S GG
Sbjct: 46  ARDKLLLVPINGFIGDQTSRGIPFLGGRDDTVTRIRATLRKAAEDPRVRGIVLLIDSAGG 105

Query: 79  SAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           S  A + ++  +++ K +   PV+  + +M AS  Y +S A++ +    TS+VGSIGV+ 
Sbjct: 106 SVTASDRVYHLVREFKRKSGIPVMAMIGDMGASGAYYVSVAADEVWTHPTSVVGSIGVVI 165

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
               +   + K+GV  +++ S   K   SP   +  K   + Q ++   Y  F  +VS +
Sbjct: 166 FNVGITGLMKKIGVEDRTLSSGAEKEMGSPLKPMTDKDRSLFQGLISDLYTQFFDIVSRN 225

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP- 255
           R I  D    L+DGRI+T  +A K  L+D +G ++++ + L  L   +    I+   P  
Sbjct: 226 RQIAPDILKPLADGRIFTARQALKNHLVDRIGYRDDLIRHLKRLMHVKEFEVIRYREPFL 285

Query: 256 -KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
                F               +  M       +  +W+P
Sbjct: 286 AATGIFGSESPADSPLASAGRLAGMMTKSGPTMLYLWDP 324


>gi|119900256|ref|YP_935469.1| putative protease IV [Azoarcus sp. BH72]
 gi|119672669|emb|CAL96583.1| putative protease IV [Azoarcus sp. BH72]
          Length = 613

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 127/266 (47%), Gaps = 13/266 (4%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVS 72
              FS  +    +   VA +  +G I D ++         L  +I     D++  A+++ 
Sbjct: 312 AYLFSLRAARPRHRDRVAVLVAQGAIADGEQPASAVGGDTLARQIREAREDNAVKAVVLR 371

Query: 73  LSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
           + SPGGSA+A E I R ++  +   KPV+  +  +AAS GY I+  ++ I A  T++ GS
Sbjct: 372 IDSPGGSAFASEVIRRELELTRRAGKPVVASMSSVAASGGYWIAVGADEIWALPTTVTGS 431

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IG+    P V   L +LGV +  V + P+   P P   ++P   + MQ  ++  Y  F+ 
Sbjct: 432 IGIFAMLPEVSGPLARLGVHVDGVATGPLAGMPDPRRALDPGMAKAMQLGIEHGYRRFLE 491

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI---RK 248
           +V+E R +   +   ++ GR+WTG  A ++GL+D +GG +   ++       +       
Sbjct: 492 VVAEGRRMKVGEVDAVARGRVWTGETALELGLVDQLGGVDAAVRAAAKRAGLEHYSVQWP 551

Query: 249 IKDWNPPKNYWFCDLKNLSISSLLED 274
           + + +  +      L ++ + + L  
Sbjct: 552 VTEVSAGRVLLQRLLADVGLDAALAA 577



 Score = 86.2 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 73/206 (35%), Gaps = 11/206 (5%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           +L+E I   + D+   AL++      G        +  A+   K     +    E     
Sbjct: 96  DLLEAIRAAADDERIGALVIETDDLAGAGLSKLGELREAVVAFKASGKPVLARGERFTQG 155

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168
            Y ++  ++ +  A    +   G+     Y K  LD LG+ +   +    K+   PF  +
Sbjct: 156 QYYLATVADEVHLAPDGFLLLQGLARHLTYFKDALDSLGIKLHVFRVGEYKSFSEPFTRN 215

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV--------LSDGRIWTGAEAKK 220
           +++ +  +  +D++D  +      V+ +R +  +            L+         A+ 
Sbjct: 216 DMSDEDREASRDLLDGLWGAMRGEVARARKLTPEALDRYVLGFADVLAQAGGDPARAAQA 275

Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSI 246
            GL+D +  ++E    L         
Sbjct: 276 AGLVDRLSTRDEWRAHLIERVGADKA 301


>gi|237809431|ref|YP_002893871.1| signal peptide peptidase SppA, 67K type [Tolumonas auensis DSM
           9187]
 gi|237501692|gb|ACQ94285.1| signal peptide peptidase SppA, 67K type [Tolumonas auensis DSM
           9187]
          Length = 616

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 71/269 (26%), Positives = 117/269 (43%), Gaps = 13/269 (4%)

Query: 33  DNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAG 83
            N P V  +   G I D          + L ++I     D    AL++ + SPGGSA+A 
Sbjct: 322 ANKPQVGLLVAAGAIVDGMSQPGTINGEALAKQIRTAMYDSKIKALVLRIDSPGGSAFAA 381

Query: 84  EAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I  A+   K   KP++  +  MAAS GY I+  ++ I A   ++ GSIGV   +   +
Sbjct: 382 EQIRTALLAFKASGKPLVVSMGSMAASGGYWIAADADKIYAEPVTITGSIGVFGMFLTAE 441

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+ LGV    + ++      SP   +     Q++Q  V+++Y  F+ LV+E R +  +
Sbjct: 442 KALNSLGVHTDGLGTTDF-TGISPTQPLPDHIKQIVQLNVENTYQRFLDLVAEGRGMTPE 500

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI--RKIKDWNPPKNYWF 260
           +   ++ GR+W G +AKK+GL+D +G   +       L          I+     K+   
Sbjct: 501 QVDKVAQGRVWIGTDAKKLGLVDELGSLSDASAEAGRLAKLTDYQLTLIEPELSAKDKLL 560

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
            +  N S   L                W+
Sbjct: 561 REFFNQSAEILPSSVTHSALGKLAIQWWS 589



 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 113/344 (32%), Gaps = 58/344 (16%)

Query: 1   MEFVLKKIKTRY-----------------VMLSLVTLTVVYFSWSSHVEDNSPHVARIAI 43
           M F+ + IK  +                 + +++V L V+     +  E        + +
Sbjct: 1   MRFLFRSIKWFFHSLWRALNFTRLLILNLIFIAIVLLIVIGLREEAPEEAIDEGALVLDL 60

Query: 44  RGQIE------------------DSQ--------ELIERIERISRDDSATALIVSL-SSP 76
            G++                   DS         +++  I+   +D     +++   +  
Sbjct: 61  SGKLVEQPTTPNPADQLIENWLSDSDKPREIAVGDVVYVIQEAKKDPRVKGIVLKTVNLE 120

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             S      I +A+ + K  K  +  V        YL++  ++ I+      V   G+  
Sbjct: 121 TTSIGKLLTITQALDEFKQSKKPVVAVGNFYQQHQYLLAAHADTILLNPAGAVTIQGLGL 180

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVS 194
              Y K  L+K  ++    +    K+   P+   +++ +A +  Q  + + +  +V   S
Sbjct: 181 YNLYFKSALEKFNLTPHVFRVGTYKSFVEPYIRDDMSAEAREANQRWLGAVWQEYVTNAS 240

Query: 195 ESRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS- 245
           ++R+IP D            L+         A + GL+D +   +E+  ++         
Sbjct: 241 KARHIPADAIAPTKEQVLERLTKAEGNAAQYALEQGLVDQLATYDEMTDTIRDFAGSDEH 300

Query: 246 ---IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
                 + D+       +  + N     LL     ++      G
Sbjct: 301 DFRSIAMSDYLQSLPPRYQPVANKPQVGLLVAAGAIVDGMSQPG 344


>gi|168244402|ref|ZP_02669334.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194449756|ref|YP_002045301.1| protease 4 [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194408060|gb|ACF68279.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205336810|gb|EDZ23574.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 618

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 72/268 (26%), Positives = 122/268 (45%), Gaps = 14/268 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +A I   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  L  +GV    V +SP+    S    ++P+  QMMQ  ++  Y  F+ LV+++R 
Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        +  +      
Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556

Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284
               + +++ S  ++L +TI  M    +
Sbjct: 557 LDMVMDSMTGSVRAMLPETIQAMLPAPL 584



 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +       S+ E  +     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90
                               +++  I +   D + T +++ L +  G+       I +A+
Sbjct: 79  ALGRQLFGASSDRLQENSMFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  VS +R I   +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             + DG       T   A    L+D +    +V ++L     
Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300


>gi|114047564|ref|YP_738114.1| signal peptide peptidase SppA, 67K type [Shewanella sp. MR-7]
 gi|113889006|gb|ABI43057.1| signal peptide peptidase SppA, 67K type [Shewanella sp. MR-7]
          Length = 614

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 65/270 (24%), Positives = 120/270 (44%), Gaps = 14/270 (5%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                V  I   G I                E + +   D    AL++ + SPGGSA+A 
Sbjct: 322 VEQDSVGIIVASGTILNGSQPAGQIGGDSTAELLRKARFDKHIKALVLRVDSPGGSAFAS 381

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + +  +K   KPV+  +  +AAS GY IS +++ I A  T+L GSIG+       +
Sbjct: 382 EQIRQELLALKAAGKPVVVSMGSLAASGGYWISASADYIFATPTTLTGSIGIFGMITTFE 441

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L  LG+    V +S         + ++P+   ++Q  ++  Y  F+ LV++ R +  +
Sbjct: 442 DSLASLGIHTDGVSTSEWAGLSVTRT-LSPQIESVIQRHIERGYLDFISLVAKERKMTLE 500

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFC 261
           +   ++ GR+W+G +A ++GL+D +G  ++       L        ++ +        F 
Sbjct: 501 QVDRIAQGRVWSGKKALELGLVDELGDIDQAVAKAAKLADLSLFDTRLIEQELTPEQRFV 560

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
                S+S+ L  ++     T ++ + A W
Sbjct: 561 QQMFASVSAYLPASLS--HSTLLEQMLAQW 588



 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/277 (12%), Positives = 91/277 (32%), Gaps = 36/277 (12%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------- 51
           ++K     +    + + ++    S  ++        + + G I D +             
Sbjct: 22  IRKFILNLIFFGFLAIILITIGSSEDIQVEDNSTLVLNLAGSIVDQKQQVDPIEAALKQG 81

Query: 52  ------------ELIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVKNRKP 98
                       ++I  I+  + D+  + +++ L+          ++I  A+ + K    
Sbjct: 82  NNGSSDGEILLADIIYVIDNATHDNRISTIVLDLAELKRAGISKLQSIGDALNRFKESGK 141

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            +  +        Y ++  ++ I       V   G+     Y K  L+KL +     +  
Sbjct: 142 KVVAIGNYYEQNQYFLASFADTIYLNPQGSVSLDGLSMYNQYFKSALEKLKIKAHIFRVG 201

Query: 159 PMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLS 208
             K+   P+   +++  A +    ++   +  + + V+E+R I  +            L 
Sbjct: 202 TFKSAVEPYMRDDMSDAAREASSALLADVWQSYTQTVAENRQIDANTLVLDSANYLAQLD 261

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
                + A A  +  +D +   EE  + +      + 
Sbjct: 262 KAEGDSAAMAINMKWVDTLATDEEFRKVMLDSVGKEK 298


>gi|86148498|ref|ZP_01066787.1| protease IV [Vibrio sp. MED222]
 gi|85833738|gb|EAQ51907.1| protease IV [Vibrio sp. MED222]
          Length = 616

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 125/274 (45%), Gaps = 16/274 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
             +   S  VA I   G I D                + +   DD   A+++ + SPGGS
Sbjct: 318 PDLTSESHDVAVIVASGAIMDGKQPRGTVGGDTTAALLRQARNDDKVKAVVLRVDSPGGS 377

Query: 80  AYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           A+A E I   I+ + +  KPV+  +  +AAS GY IS  ++ I+A  T+L GSIG+    
Sbjct: 378 AFASEVIRNEIEAIKQAGKPVVVSMSSLAASGGYWISMGADKILAQPTTLTGSIGIFSVI 437

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  L+ +GV    V +SP        + ++  A    Q  +++ Y  F+ LV E+R 
Sbjct: 438 TTFEKGLNDIGVYTDGVGTSPFSGLGIT-TGLSDGAKDAFQMGIENGYRRFISLVGENRG 496

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256
           +  D    ++ GR+WTG +A + GL+D +G  ++   +  +L   +  +I  +++     
Sbjct: 497 MEVDTVDKIAQGRVWTGQDAIEKGLVDEIGDFDDAITAAASLAELETYNIYWVEEPLSAT 556

Query: 257 NYWFCDLKNL---SISSLLEDTIPLMKQTKVQGL 287
             +  +  N    SI   ++  IP   Q   Q L
Sbjct: 557 ELFIQEFMNQVQVSIGLDIQSMIPSSLQPITQQL 590



 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 96/282 (34%), Gaps = 37/282 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + FV   +   + +LS+  +  VYF S ++           + + G I +          
Sbjct: 19  ITFVRLALVNLFFLLSIAIIYFVYFHSDTTQPTVPQESALVLNLSGPIVEQSRYINPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            +++E I     DD  T ++++    P  +      I +A+ + 
Sbjct: 79  VTGSLLGKDLPKENVLFDIVETIRYAKDDDKVTGIVLALKELPETNLTKLRYIAKALNEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     I  V +    + Y ++  +  +  +    V   G      + K  L+KL V+  
Sbjct: 139 KATGKPIYAVGDFYNQSQYYLASYATKVFLSPDGGVLLKGYSAYSLFYKTLLEKLDVNTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL------ 205
             +    K+   PF   +++  A +     +   +  +V  VS +R I            
Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESASRWLGQLWGAYVDDVSNNRQIDAKTLNPSMDSF 258

Query: 206 --VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
              L          A+K+GL+D +  +++V   L  +     
Sbjct: 259 LKDLESVDGDIAKLAEKLGLVDELATRQQVRLELADVFGSDG 300


>gi|332703631|ref|ZP_08423719.1| signal peptide peptidase SppA, 36K type [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553780|gb|EGJ50824.1| signal peptide peptidase SppA, 36K type [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 322

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 72/285 (25%), Positives = 132/285 (46%), Gaps = 24/285 (8%)

Query: 31  VEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSPG 77
                P V  I +RG +E               QE + ++++ + D S  AL++++ SPG
Sbjct: 38  EGTAEPKVVLITVRGTLETGPDEETFREAPGIVQETVSQLDKAAADPSVKALVLAVDSPG 97

Query: 78  GSAYAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           G+A A + ++  +   K +     +  + E+AAS GY IS  +++IVA  T++ GS+G +
Sbjct: 98  GTATASDILYGELLAWKEKTKAKLVVCMLEVAASGGYYISLPADVIVAHPTTITGSVGTI 157

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
           F  P V   +DK+GV +   KS   K   SPF + + + V+M   +V      F+ LV++
Sbjct: 158 FIRPKVVGLMDKIGVDVDVTKSGVNKDMGSPFRQPSREEVEMFDGIVGDMNSRFLSLVAK 217

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP- 254
            RN+  +    +S  R++T  +A+KVGL+D +G  +    +           ++  +   
Sbjct: 218 HRNLSDENMRQVSTARVFTANQARKVGLVDEIGNIDFAVATARKQAGLPENARLVVYRRT 277

Query: 255 ------PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
                 P N     + +      L     L+++    G + +W P
Sbjct: 278 EYADDNPYNSLLTRMASQPTLVDLGAAGDLLRRR--TGFYYLWEP 320


>gi|269958578|ref|YP_003328365.1| putative serine protease [Anaplasma centrale str. Israel]
 gi|269848407|gb|ACZ49051.1| putative serine protease [Anaplasma centrale str. Israel]
          Length = 293

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 87/264 (32%), Positives = 148/264 (56%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSAT 67
                 +L L+   V Y      +  N  +VAR+ I G+I  S+     + R++  DS  
Sbjct: 24  FFFVVCLLLLIVGQVDYSRLVGTLRRNHDYVARVRISGEISRSRAREAMMARLAESDSVK 83

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           AL++ + SPGG+    EA+++ I+++  +KPV+  +  +AAS GY+ + A++ +VA   +
Sbjct: 84  ALVLRIDSPGGTVGDSEALYQQIREIALKKPVVAVLGNIAASGGYMAAIAADHVVARHGT 143

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           + GSIGV+ QY  V     KLG+++KS+K++P+K+  SP  E++P+   ++Q VVD  + 
Sbjct: 144 ITGSIGVISQYIGVAEVAGKLGITLKSIKTAPLKSNMSPLEELSPEGESIIQGVVDDFHV 203

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           +F  LV+E R +  DK  V+SDGRI+TGA+A +VGL+D +GG++E  + L          
Sbjct: 204 FFTDLVAERRGLAPDKVSVVSDGRIYTGAQALQVGLVDAIGGEKEALEWLKTQRDVDVRV 263

Query: 248 KIKDWNPPKNYWFCDLKNLSISSL 271
                    +     L + +I  L
Sbjct: 264 VKDVDYQRIDSSLPALFSSAIQHL 287


>gi|86149662|ref|ZP_01067892.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88597632|ref|ZP_01100865.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|218561753|ref|YP_002343532.1| protease [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85839930|gb|EAQ57189.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88189936|gb|EAQ93912.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112359459|emb|CAL34242.1| protease [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284925364|gb|ADC27716.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. jejuni IA3902]
          Length = 298

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 66/275 (24%), Positives = 130/275 (47%), Gaps = 2/275 (0%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64
           +K I T +    L+ + +     S++   N  ++ RI ++G+I DS  ++E+I     D 
Sbjct: 15  IKFINTYFKTFVLLLIVIWILIPSANSSSNLANLERIDLKGEIFDSSAVLEKIINAKNDS 74

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
           +   ++  + SPGG+      +  AI+ +K +KPV+       AS  YL    +N I+A 
Sbjct: 75  NIKGVLFVIDSPGGAFAPSMELALAIKDLKIKKPVLVYASGTMASGSYLAGVGANKILAN 134

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             S +GSIGV+ Q   +    +KLG+  +++++   K+  +     N      +Q ++D 
Sbjct: 135 PASFIGSIGVIMQGADLSGLANKLGIKEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQ 194

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           SY  F   V++ R +  +K    ++ R++  A+AK++GLID +   E   + L  L    
Sbjct: 195 SYDLFTGFVAKERALDLNKKDQWANARVFLAAKAKELGLIDELSNYENAKKELEKLANVS 254

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
           +   +       + +   L+  + S + +  I + 
Sbjct: 255 N--PVWKEEDKIDKFLNRLEGQTSSLISKSLIEIA 287


>gi|313672173|ref|YP_004050284.1| signal peptide peptidase sppa, 36k type [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938929|gb|ADR18121.1| signal peptide peptidase SppA, 36K type [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 284

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 133/290 (45%), Gaps = 14/290 (4%)

Query: 4   VLKKIKTRYVMLSLVTLT--VVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERIS 61
           ++K +    ++L +       VY         N   +  + + G I +S  LIE++++  
Sbjct: 3   IIKFLFKFLIILLIAGFVGRAVYLLNYKTPVINKKMIVLLDLEGIILESDTLIEKLKKYE 62

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
           +D +   +I+ ++SPGG+    + I+R I+++   KPV   +  +AAS GY ++ A + I
Sbjct: 63  KDSNVVGVILRINSPGGAVAPSQEIYRFIKRM--SKPVYASMSTVAASGGYYVASACDRI 120

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
            A   ++ GSIGV+ ++  +    DK+GV  +++KS   K   S    +  +   +++  
Sbjct: 121 YAMPGTITGSIGVIMKFTDLSKIYDKIGVRTETIKSGKFKDIGSTTRSMTEEEKSILKQS 180

Query: 182 VDSSYHWFVRLVSESRNI-PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           VD  Y+ F+  +   R     ++ L  +DGRI TG EAK + L+D +G  E+ ++ +   
Sbjct: 181 VDDVYNQFIEDILSKRTFLNKEELLKYADGRIITGREAKNLKLVDKLGSYEDAYEDMKKD 240

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
                          +  +   L   + S++ E          + G   +
Sbjct: 241 KNTLDAELFI--PKDEKTFLRKLIEETRSTIKEVK-------ALNGPLYL 281


>gi|119897908|ref|YP_933121.1| peptidase [Azoarcus sp. BH72]
 gi|119670321|emb|CAL94234.1| conserved hypothetical peptidase [Azoarcus sp. BH72]
          Length = 303

 Score =  132 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 123/282 (43%), Gaps = 14/282 (4%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFS------WSSHVEDNSPHVARIAIRGQI-----EDSQEL 53
            ++    + +L+ + L V+ +        +  +     + A +++ G I       ++ +
Sbjct: 16  RRRWSVFFRLLTFIYLGVILWKVADWGEPAEALAPAGGYTAMVSVEGVIDSGSEASAERV 75

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV---ITEVHEMAASA 110
           I  +     D +   +++ ++SPGGS      I   I +++  +P    +  V +M AS 
Sbjct: 76  IGALRSAYDDKAVRGVVLRINSPGGSPVQAGMINDEIYRLRGERPDLPVVAVVEDMCASG 135

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           GY ++ A++ I+  + SLVGSIGVL         ++KLGV  + + +   K    PFS  
Sbjct: 136 GYYVAAAADKIMVDKASLVGSIGVLMDGFGFVGAMEKLGVERRLLAAGANKGFLDPFSPQ 195

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                   + ++D  +  F+ +V + R     +   L  G +WTGA + ++GL D  G  
Sbjct: 196 RETQTAHARGLLDDIHRQFIDVVRKGRGPRLKEGPELFSGLVWTGARSVELGLADGYGTV 255

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
           + V + ++     +   + + +       F      S+++ L
Sbjct: 256 DSVARDVFQAEEVRDFTETRSFAERFAQRFGAGVTESLATAL 297


>gi|326424138|ref|NP_761927.2| signal peptide peptidase SppA, 67K type [Vibrio vulnificus CMCP6]
 gi|319999523|gb|AAO11454.2| signal peptide peptidase SppA, 67K type [Vibrio vulnificus CMCP6]
          Length = 616

 Score =  132 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 126/274 (45%), Gaps = 13/274 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           ++      +   + + N+  +A +   G I D            +   + +   DD   A
Sbjct: 307 ISYYDYRATMHDNFDVNADDIAVVVASGTIMDGQQPRGTVGGDTVAGLLRQARNDDKVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   +Q +    KP++  +  +AAS GY IS +++ I+A  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEVQALKDAGKPIVVSMSSLAASGGYWISMSADKIIAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +   +KLG+    V +SP   E    + ++  A Q  Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGFNKLGIYTDGVGTSPFSGEGIS-TGLSKGASQAFQMGIEHGYQ 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI- 246
            F+ LV ++R++  D    ++ GR+WTG +A + GL+D +G  ++       +   ++  
Sbjct: 486 RFISLVGDNRDLSLDAVDKVAQGRVWTGYDALQHGLVDQIGDFDDAVAEAAKMAQLENYN 545

Query: 247 -RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
              +++   P   +  +       S+  D   ++
Sbjct: 546 LYWVEEPLSPTEQFIQEFMKQVKISMGVDIQSIL 579



 Score = 95.4 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 56/295 (18%), Positives = 104/295 (35%), Gaps = 40/295 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSS-HVEDNSPHVARIAIRGQIEDSQ-------- 51
           + FV   +     +LS+  +  VYF       +   P    + + G I +          
Sbjct: 19  ITFVRLALTNLIFLLSVALVYFVYFYGHDTQPQVEQPSALVLNLSGPIVEQSLYINPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93
                            ++++ I     D+  T L++SL   P  +      I +A+ + 
Sbjct: 79  FTSSLFGEEIPKENVLFDVVDTIRYAKDDEKITGLVLSLRDMPETNLTKLRYIAKALNEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     I  V      + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 139 KASGKPIYAVGAFYNQSQYYLASYADKIYLAPDGGVMLKGYSAFNLYYKTLLEKLDVTTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV----- 206
             +    K+   PF   +++P A +     +   +  FV  V+ +RNI            
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSPAAKESATRWLTQLWGAFVDDVANNRNIDPKTLNPSMEEF 258

Query: 207 LSDGRIWTGAEA---KKVGLIDVVGGQEEVWQSLYAL---GVDQSIRKIKDWNPP 255
           LS  +   G  A    K+GL+D +  ++++   L        D S + I  ++  
Sbjct: 259 LSQLKSVNGDLAALSIKLGLVDELATRQQLRAQLAEKFGASGDDSYKAISYYDYR 313


>gi|302878040|ref|YP_003846604.1| peptidase S49 [Gallionella capsiferriformans ES-2]
 gi|302580829|gb|ADL54840.1| peptidase S49 [Gallionella capsiferriformans ES-2]
          Length = 313

 Score =  132 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 119/290 (41%), Gaps = 14/290 (4%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-----ELIERIE 58
           +  K+ T   +  ++ + + +F  S        H A + ++G I          LI  ++
Sbjct: 30  IFFKVLTFGYLFVILFVLMGWFDKSETALSTGKHTALVDMQGVIAADSAASADNLIPGLQ 89

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLIS 115
              +D     +I+ ++SPGGS      I   I++++ + P I     V ++ AS GY ++
Sbjct: 90  AAFKDKGTQGVILRINSPGGSPVQAGQINDEIRRLRVKYPAIPLYVVVEDICASGGYYVA 149

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + SL+GSIGVL         ++KLGV  + V +   K    PFS V P   
Sbjct: 150 AAADKIFVDKASLIGSIGVLMDGFGFTGTMEKLGVERRLVTAGSNKGFMDPFSAVRPDQQ 209

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           +  + ++   +  F+ +V + R     +T     G +W G    ++GL D  G  E V +
Sbjct: 210 EYAKQMLAQIHQQFIDVVKQGRGKRLKETPDTFSGLVWNGQAGIEMGLADGYGSVESVAR 269

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
            +          ++ D+   + +     K          +        ++
Sbjct: 270 DVIK------AEEVVDFTVKEGFADRLAKRFGAGVASAISFSTQSGVTLR 313


>gi|291614214|ref|YP_003524371.1| peptidase S49 [Sideroxydans lithotrophicus ES-1]
 gi|291584326|gb|ADE11984.1| peptidase S49 [Sideroxydans lithotrophicus ES-1]
          Length = 317

 Score =  132 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 104/248 (41%), Gaps = 14/248 (5%)

Query: 30  HVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
               +  H A I + G I          LI  ++   +D +   +I+ ++SPGGS     
Sbjct: 58  DGSLSGKHTALIDLTGVISSDSNANADNLIGSLQDAFKDKNTVGVILRINSPGGSPVQAG 117

Query: 85  AIFRAIQK---VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
            +   I++   +    P+   V +M AS GY I+ A++ I   + S+VGSIGVL      
Sbjct: 118 LVNDEIRRQRKLHPDIPLYVVVEDMCASGGYYIAAAADKIYVNKASIVGSIGVLMDGFGF 177

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              + KLGV  +   +   K    PFS +NPK     + +++  +  F+ +V + R    
Sbjct: 178 TGTMQKLGVERRLFTAGENKGFMDPFSPLNPKHEAFTRKMLEDIHMQFIDVVKQGRGKRL 237

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
            +T     G  WTG +A ++GL D  G  + V + +           I D+   + +   
Sbjct: 238 KETPETFSGLFWTGDKAIEMGLADEYGSVDSVARDVLK------EENIVDFTTHEGFADR 291

Query: 262 DLKNLSIS 269
             K     
Sbjct: 292 LAKKFGAG 299


>gi|259908290|ref|YP_002648646.1| protease 4 [Erwinia pyrifoliae Ep1/96]
 gi|224963912|emb|CAX55416.1| Protease IV [Erwinia pyrifoliae Ep1/96]
 gi|283478224|emb|CAY74140.1| protease IV [Erwinia pyrifoliae DSM 12163]
          Length = 618

 Score =  132 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 72/264 (27%), Positives = 118/264 (44%), Gaps = 14/264 (5%)

Query: 33  DNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAG 83
            +  +VA I   G I D +E             I     D    A++  ++SPGGS  A 
Sbjct: 323 SSDGNVAVILANGAIMDGEEAPGSVGADTTALEIRAARLDPKIKAIVFRVNSPGGSVTAS 382

Query: 84  EAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I   +   K   KPV+  +  MAAS GY +S  +N I+A+  +L GSIG+      V+
Sbjct: 383 ETIREELAAAKEAGKPVVVSMGGMAASGGYWVSTPANYIIASPNTLTGSIGIFGVINTVE 442

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LD +GV    V +SP+    +    + P+  QMMQ  +D  Y  F+ LV++SRN   +
Sbjct: 443 SSLDAIGVHTDGVATSPLADV-ASTKALPPEVQQMMQLSIDKGYQNFIGLVAKSRNKTSE 501

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           +   ++ G +WTG++AK  GLID +G  ++       L       ++  +          
Sbjct: 502 EIDKIAQGHVWTGSDAKAKGLIDALGDFDDAVAKAAELAKLDK-PQLSWYQGEPGLLDML 560

Query: 263 LKNLSISSLLEDTIPLMKQTKVQG 286
              + +S+     +P   +  +  
Sbjct: 561 FSQVDVSAH--AALPATLKAYLPA 582



 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 96/279 (34%), Gaps = 40/279 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +   +++L +V    ++F    +            + + G + D         
Sbjct: 19  LNFVREFVLNLFLILLIVVALGLWFQLHNAGTPAATQKGALVVNLSGAVVDKPSVSNKFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               ++++ I +   D + T +++ L    G      + I +A+
Sbjct: 79  KIGRQLLGASSGRLKENSLFDVVDAIRQAKDDTNITGMVLDLRHFAGGDQPSLQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    I    E  + A Y ++  +N I  +    V   G      Y K  +DKL +
Sbjct: 139 REFRDGGKPIFATGESYSQAQYYLASFANKIYLSPQGNVDLHGFATNRLYYKTLIDKLKI 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF    ++P+A       V   +  ++ +++ +R I   +     
Sbjct: 199 SSHVFRVGTYKSAVEPFLRDSMSPEARDADGRWVGELWQNYLNMLAANRQITVVQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
                 L      T   AK+  L+D +     V   L  
Sbjct: 259 QGVLNGLQKLGGDTAQYAKENKLVDELASSSRVEHELVK 297


>gi|328474533|gb|EGF45338.1| protease IV [Vibrio parahaemolyticus 10329]
          Length = 616

 Score =  132 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 67/274 (24%), Positives = 124/274 (45%), Gaps = 13/274 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           ++      +        +  +A +   G I D            +   + +   D+   A
Sbjct: 307 ISYYDYLATIRPDYTLANHDIAVVVASGAIMDGQQPRGTVGGDTVASLLRQARNDEKVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   ++ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEVEALKKAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +    KLG++   V +SP  +     + ++  A Q  Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGFSKLGINTDGVGTSPF-SGDGITTGLSEGASQAFQLGIEHGYK 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-- 245
            F+ LV  +R++  ++   ++ GR+WTG +A   GL+D +G  ++  +    L       
Sbjct: 486 RFISLVGSNRDMTVEEVDKVAQGRVWTGQDALSFGLVDQMGDFDDAVELAAKLANVTDYG 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
           I  +++   P   +  +  N    SL  D   L+
Sbjct: 546 IYWVEEPLSPTELFLQEFMNQVKVSLGVDATSLL 579



 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 91/284 (32%), Gaps = 37/284 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + F+   +     +L +      + ++              + + G I + +        
Sbjct: 19  ITFIRLALANLIFLLMIAVFYFAFTYTGEGRPVIEKESALVMNLSGPIVEQRRYVNPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93
                            ++++ I     D   + L+++L   P  +      I +A+ + 
Sbjct: 79  VAGSLLGNEMPKENVLFDIVDTIRYAKDDAKVSGLVLALRDLPETNLTKLRYIAKALNEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ +  A    V   G      Y K  L+KL VS  
Sbjct: 139 KASGKPVYAVGDFYNQSQYYLASYADKVYMAPDGGVLIKGYSAYSMYYKTLLEKLDVSTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF   +++  A +     V   +  FV  V+ +RNI         +  
Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESATRWVTQLWSAFVDDVTTNRNINAKVLNPTMEEL 258

Query: 212 I--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           +             A K+GL+D +  ++++              
Sbjct: 259 LTEMKSVDGDLAQLAVKMGLVDELATRQDIRTLFAKEFGSDGKD 302


>gi|229496545|ref|ZP_04390259.1| signal peptide peptidase SppA, 67K type [Porphyromonas endodontalis
           ATCC 35406]
 gi|229316442|gb|EEN82361.1| signal peptide peptidase SppA, 67K type [Porphyromonas endodontalis
           ATCC 35406]
          Length = 554

 Score =  132 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 79/282 (28%), Positives = 136/282 (48%), Gaps = 14/282 (4%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------QELIERIERISRDDSATAL 69
            VTL  VY S   +       V  +   G+I          + L+ R+ + + DD   A+
Sbjct: 256 FVTLNRVYNSERRYDNSGDGTVQVLFAEGEITSGVEFGTITEALVGRLLKAADDDDIDAV 315

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           ++ ++SPGGS+Y  + I+ A++  K++KP++  + + AAS GY ISCASN I A  T++ 
Sbjct: 316 VLRVNSPGGSSYVSDQIWDAVRYTKSKKPIVVSMGDYAASGGYYISCASNYIFAEPTTIT 375

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIG+   +P       K  V+   VK++      + F  +  +   +MQ  ++  Y  F
Sbjct: 376 GSIGIFGLFPNFAGTAQKFSVTEDGVKTAKYADFGNVFRPMTDEERALMQAYIERGYDTF 435

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD------ 243
           +  V+E R +   +  +++ GR+WTG +A    L+D +GG +E       L         
Sbjct: 436 LSRVAEGRKLEKSQVDLVAQGRVWTGKQALARHLVDELGGLDEAIAKAAELANINTPSVW 495

Query: 244 -QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
            +S R+ K  N    Y F     L  + L E+ I  +K+ ++
Sbjct: 496 YESSRQDKFSNLVDRYLFEGSDKLVRNILTEEEIEALKKARI 537



 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 83/254 (32%), Gaps = 23/254 (9%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRG--QIEDSQEL-----------------IERIER 59
            + VV       V      +  + +    +IE                      I  I  
Sbjct: 4   FIAVVANQSHKSVSIPKESLLVVDLSSIKEIETDSPFDNFLGSKREKSLTLTEAIRSIRY 63

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119
            + +     + ++ + P     + + + RA++  K     +    +  +  GY ++  ++
Sbjct: 64  AAENPRIEGIYLTSAMPEAGLASIDELRRALKDFKKSGKFVISYADQYSQKGYYLASVAD 123

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQM 177
            I       V   G+     + K  L+K GV+++  K    K    PF   +++      
Sbjct: 124 EIYLNPQGAVELDGMYVSNVFYKNALEKFGVTMQVFKVGTYKGAVEPFLLDKLSEPNRAQ 183

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR--IWTGAEAKKVGLIDVVGGQEEVWQ 235
           +       ++  ++ +S+ RNI  D    L D      +  E     L+D +  + EV +
Sbjct: 184 ITSFTSELWNNMLQGISQERNIALDSLSRLVDRAPMFLSQQELVASKLVDKLCYEREVIK 243

Query: 236 SLYALGVDQSIRKI 249
                   +    +
Sbjct: 244 MFEDEYGIKEDHFV 257


>gi|271969371|ref|YP_003343567.1| signal peptide peptidase SppA, 67K type [Streptosporangium roseum
           DSM 43021]
 gi|270512546|gb|ACZ90824.1| signal peptide peptidase SppA, 67K type [Streptosporangium roseum
           DSM 43021]
          Length = 566

 Score =  132 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 68/276 (24%), Positives = 119/276 (43%), Gaps = 25/276 (9%)

Query: 34  NSPHVARIAIRGQI---------------EDSQELIERIERISRDDSATALIVSLSSPGG 78
               VA +   G I                 S  +   +    RD+   A++  + SPGG
Sbjct: 275 GEETVALVHGNGAIRLGRSGRSPLGGGSAMGSDTVCAALRAARRDEHVKAVVFRVDSPGG 334

Query: 79  SAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           S  A +AI+R +   +   KP++  + ++AAS GY++S A++ IVA   +L GSIGV   
Sbjct: 335 SYVASDAIWREVVLTRKAGKPIVVSMGDLAASGGYMVSMAADAIVAQPGTLTGSIGVFGG 394

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
              +   L+K+GVS ++V         S  +  +      +   +D  Y  FV  V+E R
Sbjct: 395 KAVIGGLLEKIGVSSETVGEGANAGMFSSTNAFSEAQWARVNAWLDRVYEDFVNKVAEGR 454

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
            +  ++   L+ GR+WTGA+A   GL+D +GG ++            +   ++ +     
Sbjct: 455 GLSRERAHELAKGRVWTGADAHAHGLVDELGGLQDALALARRKAGLAADAPVRAY----- 509

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
                L+ L  +   ED      + +++     W P
Sbjct: 510 PRLSPLERLRPADSSEDRTAATARIRLEA----WGP 541



 Score = 92.0 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 79/210 (37%), Gaps = 7/210 (3%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
               +++  ++R  +D    ALIV + +        + + +A+ + +    +     E  
Sbjct: 50  TSLTDVLSGLKRARKDSRVKALIVKIGTQPLGLAMVQDLRQAVIEFRAAGKLTVAFAETF 109

Query: 108 ASA-----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
                    Y +  A   +    +  VG  GV  +  +++  L KLGV  +  +    K 
Sbjct: 110 GEFGAGTVPYYLGSAFERVYLQPSGDVGLTGVAMEQRFLRGALGKLGVEYQMGQRHEYKT 169

Query: 163 --EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKK 220
                    +     + M  + +S     V  V+E R +   K   L D   + GAEA +
Sbjct: 170 AANTFTQDHMTDPHRESMGRITESVTEQIVAGVAEGRGLEPTKVRKLIDEGPFIGAEAVE 229

Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
            GL+D +  ++EV+  +     D ++    
Sbjct: 230 AGLVDRMAYRDEVYDEVKQAVGDDALLLYV 259


>gi|157370962|ref|YP_001478951.1| protease 4 [Serratia proteamaculans 568]
 gi|157322726|gb|ABV41823.1| signal peptide peptidase SppA, 67K type [Serratia proteamaculans
           568]
          Length = 618

 Score =  132 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 68/271 (25%), Positives = 119/271 (43%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
               D    +A I   G I D                + +   D +  A+I  ++SPGGS
Sbjct: 319 KPTPDQGGKIAVIFANGAIMDGPQTPGTVGGDTTAAELRQARLDPAIKAVIFRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +  V+   KPV+  +  MAAS GY +S  ++ I+A+ ++L GSIG+    
Sbjct: 379 VSASEVIRSELAAVRAAGKPVVVSMGGMAASGGYWVSTPADYIIASPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  LD +GV    V +SP+         + P+  QMMQ  ++  Y  F+ LV++SR 
Sbjct: 439 NTYEQTLDSIGVHTDGVATSPLADLAVT-KALPPEFSQMMQLNIEKGYQNFIDLVAKSRK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           +   +   ++ G +W G++AK  GL+D +G  ++  +    L       ++  +    + 
Sbjct: 498 MTPQQVDQIAQGHVWLGSDAKTNGLVDQLGDFDDAVKKAAELAQL-KQWQLNWFVDTPSL 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
               L    +S  +   +P   Q+ +    A
Sbjct: 557 TDMVLSQFGVS--IHAMLPAAIQSMLPAPLA 585



 Score = 85.4 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 84/237 (35%), Gaps = 17/237 (7%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASA 110
           ++++ I +   D + T +++ L+   G+     + I +A+++ ++    I  + +     
Sbjct: 99  DVVDSIRKAKDDKNITGMVLQLNDFAGADQPSLQYIGKALREFRDSGKPIFAIGDSYNQT 158

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FS 168
            Y ++  +N +  +    V   G      Y K  L+KL V+    +    K+   P    
Sbjct: 159 QYYLASYANKVYLSPQGAVDLHGFATNNLYYKSLLEKLKVTTNIFRVGTYKSAVEPLIRD 218

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKK 220
           +++P A +     +   +  ++  V+ +R I   +           +      T   A  
Sbjct: 219 DMSPAAREADSRWIGGLWQNYLDTVAANRQITAQQLFPGAAGVLSGMQAAGGDTAKYALD 278

Query: 221 VGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
             L+D +  +  +   L           D +   I D+ P           +  ++ 
Sbjct: 279 NKLVDELASRTVIENQLIKTFGWDKQANDFNATSIYDYQPKPTPDQGGKIAVIFANG 335


>gi|312882482|ref|ZP_07742223.1| protease IV [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369882|gb|EFP97393.1| protease IV [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 616

 Score =  132 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 134/273 (49%), Gaps = 13/273 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSL 73
              S +  ++ N+  +A +   G I D            +   + +   D    A+++ +
Sbjct: 312 YLTSMAPKLQYNNDDIAVVVASGAIMDGSQPRGTVGGDTVAALLRQARNDKKVKAVVLRV 371

Query: 74  SSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
            SPGGSA+A E I   +Q +K   KPV+  +  +AAS GY IS +++ IVA  T+L GSI
Sbjct: 372 DSPGGSAFASEVIRNEVQALKAEGKPVVVSMSSLAASGGYWISMSADSIVAQPTTLTGSI 431

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           G+       +  L+KLG+    V +SP  +     + ++  A Q +Q  +D  Y  F+ L
Sbjct: 432 GIFSIITTFEKGLNKLGIYTDGVGTSPF-SGVGLTTGLSEGASQALQMGIDHGYQRFISL 490

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI--RKIK 250
           VS+SR +P DK   +++GR+WTG +A K+GL+D +G  ++       L   +      ++
Sbjct: 491 VSQSRQLPIDKMEGIAEGRVWTGEDALKLGLVDKIGDFDDAVALAAQLAKLEKYNLYWVE 550

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
           +   P   +  +  N    ++  D + ++ ++ 
Sbjct: 551 EPLSPAQEFIKNFLNQVSVAMHIDPLAILPESM 583



 Score = 92.0 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 102/291 (35%), Gaps = 39/291 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVED-NSPHVARIAIRGQIEDSQ-------- 51
           + F+ + +     +L+L  +  VY S  +  +         + + G I +          
Sbjct: 19  ITFIRRALVNMIFLLTLGAIYFVYTSADAPKKSVPEKSALVLNLSGPIVEQSSYINPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93
                            ++++ I     D     ++++L      +      I +AI + 
Sbjct: 79  VTGSILGQDMPHENLLFDIVDTIRHAKEDPKIGGIVLALRDLAPTNLTKLRYIAKAINEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K+    +  V +M   + Y ++  ++ +  A    V   G      Y K  L+KL V+  
Sbjct: 139 KSSGKPVYAVGDMYNQSQYYLASYADKVYLAPDGAVMLKGYSAYSMYYKTLLEKLDVNTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL------ 205
             +    K+   PF   +++P A +     +   +  +V  V+ +R +  +         
Sbjct: 199 VFRVGTYKSAVEPFLRDDMSPAAKETTSRWLSQLWDAYVDDVANNRQLAPETLKLNMEEF 258

Query: 206 --VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDW 252
             +L   +    A +  +GL+D +  ++++   L  +     +      D+
Sbjct: 259 LALLKQNQGNLAALSLNLGLVDQLATRQQIRTELADVFGSNGEDSYNYVDY 309


>gi|15022428|dbj|BAB62249.1| proteinase IV [Treponema medium]
          Length = 606

 Score =  132 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 59/285 (20%), Positives = 121/285 (42%), Gaps = 17/285 (5%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE----------LIERIERISRDDSATAL 69
           +    ++ S   ++    +  I + G I  + +          L++  +  + DDS  A+
Sbjct: 308 INYYSYNKSFKKKETDNQIGVIYLTGSITGTSDNTSDNADSPTLVDLFDEAADDDSIKAV 367

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETS 127
           ++ + S GG   A E I R+++++  +  KPV+  + ++AAS  Y I+ +++ I  +  +
Sbjct: 368 VLRIDSGGGEVNASEDIRRSLERLSKKIGKPVVVSMGDIAASGAYWIASSADYIFCSPYT 427

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           + GSIGV    P ++  + +         S   +   S F           +  V  +Y 
Sbjct: 428 ITGSIGVFAVSPSIQKAVQEYFGIHVDGVSVSGRMPYSIFRNPTDAEKTQSELEVMHTYS 487

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F+  V++ RN+P      L+ G+I++G +AK++ L D +GG  +           +   
Sbjct: 488 IFLDTVAQGRNLPRATVEELAQGKIYSGTQAKELQLADELGGFTDAVNYAATKAGIKETY 547

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
            +K            L      +LL D +   K   +Q L+ ++ 
Sbjct: 548 SLKVLYKEPPVTDEIL-----KTLLADNVRFYKTADLQVLYELFR 587



 Score = 59.2 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 76/250 (30%), Gaps = 15/250 (6%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
            ++ + +   + D   TA++  LS   G S      +  A+ + K+    +         
Sbjct: 95  SDITDALRHAAHDRRITAVLFDLSGLYGISTGHFTELKTALLEYKDANKPLYAFSTNYGL 154

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE--PSPF 167
             Y I+  ++ I       V   G   +  +      KLGV      +   K+       
Sbjct: 155 GRYYIASFADHIYLDPMGEVDLSGFYTESLFYGEMEHKLGVQWNVAHAGAFKSMAETYSR 214

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRN--------IPYDKTLVLSDGRIWTGAEAK 219
           +E++         V+   +H +++ ++ +R            +    L      +   A 
Sbjct: 215 TEMSAGVRNNNLSVLKDLWHMYLQDIAANRADDANRFETYTVNYNDALRKVNGNSAQAAL 274

Query: 220 KVGLIDVVGGQEEVWQSL----YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
              LI  +G  EE    L           S   I  ++  K++   +  N      L  +
Sbjct: 275 DANLITDIGTYEECGVELGVLDEETYNLSSRDYINYYSYNKSFKKKETDNQIGVIYLTGS 334

Query: 276 IPLMKQTKVQ 285
           I         
Sbjct: 335 ITGTSDNTSD 344


>gi|315641101|ref|ZP_07896180.1| U7 family peptidase [Enterococcus italicus DSM 15952]
 gi|315483109|gb|EFU73626.1| U7 family peptidase [Enterococcus italicus DSM 15952]
          Length = 343

 Score =  132 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 72/276 (26%), Positives = 135/276 (48%), Gaps = 21/276 (7%)

Query: 30  HVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSS 75
              D+   + ++ + G I D+              Q+L+  ++ I  DDS   +++ ++S
Sbjct: 55  EQGDSDKRIVQLTVDGTISDTGESTSLFSSEGYNHQQLLSELKAIQEDDSIKGVLLVVNS 114

Query: 76  PGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           PGG  Y    I + I KV+ + K +   +  MAAS GY IS +++ I A   ++ GSIGV
Sbjct: 115 PGGGVYESAEIAKEIAKVQQKGKILYVSMKSMAASGGYYISASADKIFATNETITGSIGV 174

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +         L+KLGV+ ++ KS  +K   S       +   +MQ  +DS+Y  FV +V+
Sbjct: 175 IASNLNYSGLLEKLGVTDQTYKSGALKDMNSSVRPATDEDKAVMQAYIDSAYGRFVDVVA 234

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
             RN+  D    L+DGRI+ G++A K GL+D +G Q++   +L      ++  ++ ++  
Sbjct: 235 NGRNLSVDAVKTLADGRIYDGSQAVKNGLVDEIGYQDDTLAALKKDNKLENA-EVFEYAV 293

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
               +       S++      +  +KQ++   + ++
Sbjct: 294 SATGFASSWLGSSLA-----ELQGLKQSESSRVLSI 324


>gi|326334330|ref|ZP_08200544.1| signal peptide peptidase SppA [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325693489|gb|EGD35414.1| signal peptide peptidase SppA [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 607

 Score =  132 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 69/237 (29%), Positives = 114/237 (48%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             ++ +IE +     D +  A+I+ ++SPGGS  A E I R I   +  KPV T +   A
Sbjct: 338 IGNETIIESLRDAREDKNIKAIILRINSPGGSGLASELIHREIALTQKVKPVYTSMGNWA 397

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           AS GY I+C SN I A + +L GSIGV    P  K   DK+G+  + V++ P     S  
Sbjct: 398 ASGGYYIACNSNRIFADKETLTGSIGVFGLIPNAKELADKIGIHSQQVETHPHALTYSLL 457

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
            +   K  +++ + ++  Y  FV+ V++ R + ++K   L+ GR+WTGA+A K GLID +
Sbjct: 458 EKTPEKTREVITEGIERFYKKFVQRVADGRKMTWEKVDSLAQGRVWTGADALKHGLIDQI 517

Query: 228 GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
           G   +V   +       S        P     F +       +     +  + + ++
Sbjct: 518 GSLNDVIDYVAKEKNLSSGNYSLIAYPIIEVDFSEFFKKQFQASTRAELRFLLREEI 574



 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 88/274 (32%), Gaps = 25/274 (9%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIEDSQE----- 52
           ++ +L  I   ++ + L+ L  +                 +  +  +  + +  +     
Sbjct: 17  LKTILAVIIGFFISICLILLAFIGMGSAFSPKKESTKENSILSLDFKKPVYEYSQPIYIK 76

Query: 53  --------------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
                         ++  I+    D     +I+  +           I +A+   K    
Sbjct: 77  NFNYEITEENTLTAILRAIKYAKTDKHIKGIILGSTEGITGKTHLADIRKAVADFKTTGK 136

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            +    E  +   Y +   ++ +       V   G+  +  Y K   +K G+ ++  +  
Sbjct: 137 FVYAFGESISQYDYFLHSVADSLFLGTLGSVDIQGLSAEVLYYKDLQEKTGIHMEIFRHG 196

Query: 159 PMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTG 215
             K+   PF E  ++    + +   + S +  +   V +SR         ++D     T 
Sbjct: 197 KYKSAVEPFLENTMSEANREQISAYLHSLWQSYADEVVQSRGFSLSDLNQIADSLWGRTP 256

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
             A K  L+D +   +E   SL  +   + I  +
Sbjct: 257 ELALKHHLVDKIAFHDEFENSLCKVTKSEKIEDL 290


>gi|149920043|ref|ZP_01908517.1| signal peptide peptidase SppA, 36K type [Plesiocystis pacifica
           SIR-1]
 gi|149819140|gb|EDM78576.1| signal peptide peptidase SppA, 36K type [Plesiocystis pacifica
           SIR-1]
          Length = 884

 Score =  132 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 117/274 (42%), Gaps = 23/274 (8%)

Query: 37  HVARIAIRGQIED---------------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
           HVA + I G I+D               +  L + I  +  D    A++V + SPGGS  
Sbjct: 569 HVAVLHIDGTIDDGISLHVPILDIDVSGAASLTKTIAALRDDPDVRAIVVRVDSPGGSVK 628

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
             + I  A+   +  KPV+  +   AAS GY ++ A   I A  T+L GSIG+ +     
Sbjct: 629 GAQDIAHALDLAREVKPVVISMGNQAASGGYWVATAGQYIYADATTLTGSIGIFYPKFDF 688

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
             FLD+ GV + SV      A  S +   +    +     + +SY  F+  V+E+R +  
Sbjct: 689 SEFLDRYGVGVDSVAIGDRAAMRSMWLANSDADREAAMRGIRASYDRFIVRVAEARAMTP 748

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY---ALGVDQSIRKIKDWN--PPK 256
           ++   ++ GR+W+G  A +VGL+D  GG  E          L       +I+ +   P  
Sbjct: 749 EQADAVARGRVWSGVRALEVGLVDRYGGLYEAVGRAAVMGELADSGDALEIRHYPEDPTL 808

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
                 L N  +   L      ++    QGL A+
Sbjct: 809 VDQIRRLWNFELDLPLGRAGGALRG---QGLAAI 839



 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 13/228 (5%)

Query: 37  HVARIAIRGQIEDSQELIERIER----ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
            V RI++ G+  D ++L E +        R      +++ +          E +  A+ +
Sbjct: 338 QVTRISLAGK-SDDRDLAEVVWTFDGLARRGPGV--ILLEVDGSDFGLAQLEEVREAVLR 394

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            + +   +    E A++  Y ++ + + I A     +   GVL    Y    L +LGV  
Sbjct: 395 YRAQGGKVVAYLEGASTFEYFLAASCDRIYAHPQQGLELRGVLRNTFYFGELLGRLGVRA 454

Query: 153 KSVKSSPMK--AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
           + V+ +  K   E +   E +    +  +  V  +++  VRL+  SR           D 
Sbjct: 455 EFVRVAEYKGTPERASRGEPSAPVARANRAYVTDTWNHVVRLIGHSRARDPAVVSEWIDR 514

Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            +WT  +A+++GLI+ +   EE+   L         R ++   PPK  
Sbjct: 515 AVWTPEDARRMGLIEGLAWPEELDARLEGWLG----RAVRIDAPPKAP 558


>gi|28898926|ref|NP_798531.1| protease IV [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838581|ref|ZP_01991248.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus
           AQ3810]
 gi|260363623|ref|ZP_05776430.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus
           K5030]
 gi|260878875|ref|ZP_05891230.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus
           AN-5034]
 gi|260896203|ref|ZP_05904699.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus
           Peru-466]
 gi|260900719|ref|ZP_05909114.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus
           AQ4037]
 gi|28807145|dbj|BAC60415.1| protease IV [Vibrio parahaemolyticus RIMD 2210633]
 gi|149748046|gb|EDM58905.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus
           AQ3810]
 gi|308088812|gb|EFO38507.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus
           Peru-466]
 gi|308094244|gb|EFO43939.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus
           AN-5034]
 gi|308109743|gb|EFO47283.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus
           AQ4037]
 gi|308115086|gb|EFO52626.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus
           K5030]
          Length = 616

 Score =  132 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 67/274 (24%), Positives = 124/274 (45%), Gaps = 13/274 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           ++      +        +  +A +   G I D            +   + +   D+   A
Sbjct: 307 ISYYDYLATIRPDYTLANHDIAVVVASGAIMDGQQPRGTVGGDTVASLLRQARNDEKVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   ++ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEVEALKKAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +    KLG++   V +SP  +     + ++  A Q  Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGFSKLGINTDGVGTSPF-SGDGITTGLSEGASQAFQLGIEHGYK 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-- 245
            F+ LV  +R++  ++   ++ GR+WTG +A   GL+D +G  ++  +    L       
Sbjct: 486 RFISLVGSNRDMTVEEVDKVAQGRVWTGQDALSFGLVDQMGDFDDAVELAAKLANVTDYG 545

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
           I  +++   P   +  +  N    SL  D   L+
Sbjct: 546 IYWVEEPLSPTELFLQEFMNQVKVSLGVDATSLL 579



 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 91/284 (32%), Gaps = 37/284 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + F+   +     +L +      + ++              + + G I + +        
Sbjct: 19  ITFIRLALANLIFLLMIAVFYFAFTYTGEGRPVIEKESALVMNLSGPIVEQRRYVNPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93
                            ++++ I     D   + L+++L   P  +      I +A+ + 
Sbjct: 79  VAGSLLGNEMPKENVLFDIVDTIRYAKDDAKVSGLVLALRDLPETNLTKLRYIAKALNEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ +  A    V   G      Y K  L+KL VS  
Sbjct: 139 KASGKPVYAVGDFYNQSQYYLASYADKVYMAPDGGVLIKGYSAYSMYYKTLLEKLDVSTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF   +++  A +     V   +  FV  V+ +RNI         +  
Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESATRWVTQLWSAFVDDVTTNRNINAKVLNPTMEEL 258

Query: 212 I--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           +             A K+GL+D +  ++++              
Sbjct: 259 LAEMKSVDGDLAQLAVKMGLVDELATRQDIRTLFAKEFGSDGKD 302


>gi|253827669|ref|ZP_04870554.1| protease IV [Helicobacter canadensis MIT 98-5491]
 gi|253511075|gb|EES89734.1| protease IV [Helicobacter canadensis MIT 98-5491]
          Length = 277

 Score =  132 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 121/244 (49%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIV 71
           +  L  + + V+ F  SS    +  +VARI ++G I  S   +E + ++  + +   +++
Sbjct: 4   FKALVFLLIVVLIFMPSSSENSSLANVARIDLKGMIIQSDSFLEELSKLENNPNIKGVLL 63

Query: 72  SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
            + SPGG+      I  A+++++++KP++       AS  YL    ++ I+A + +LVGS
Sbjct: 64  VIDSPGGTIPPSVEISEAVKRMRSKKPIVAYAQGSMASGSYLAGVWADRIIANKGALVGS 123

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IGV+     V    +KLG+  + +K+   K   +     N    +M++ ++   Y  FV 
Sbjct: 124 IGVILNGVDVSELAEKLGIKTQILKAGIYKEAGTFMRPWNQAEEEMLKGLIKEQYEMFVS 183

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
            V  +RN+   K    + GR+++ + A K+GL+D +    E  ++L+ L   Q+   ++ 
Sbjct: 184 EVVAARNLEITKEGEFAQGRVFSASNALKLGLVDSISSIYEAQKTLFELAKIQNPIWLQK 243

Query: 252 WNPP 255
               
Sbjct: 244 SEME 247


>gi|289582267|ref|YP_003480733.1| signal peptide peptidase SppA, 36K type [Natrialba magadii ATCC
           43099]
 gi|289531820|gb|ADD06171.1| signal peptide peptidase SppA, 36K type [Natrialba magadii ATCC
           43099]
          Length = 334

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 129/298 (43%), Gaps = 27/298 (9%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------DSQ 51
           +    + L ++ L +   S  +     S +VA +A+ G I                  + 
Sbjct: 38  LFGLVIALVVILLGIKVISGIASSMFASYNVAEVAVEGPITRDGGGGGPLPSRPQSTPAD 97

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
           +++E+I+R   D++  AL++ L++PGG     + I  A ++     P +   +++ AS G
Sbjct: 98  DIVEQIDRADEDENVDALLLKLNTPGGEVVPSDDIRLAAERF--DGPTVAYTNDVCASGG 155

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+   + + A + S+VGSIGV+          +K+G+S +   +   K   +P  E+ 
Sbjct: 156 YWIASGCDALWARDGSIVGSIGVIGSRVNASDLAEKVGLSYERFAAGEFKDAGTPLKELE 215

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
                 +Q ++D  Y  FV  VS+ R++  +     ++ RI+ G EA ++GL+D +G + 
Sbjct: 216 EDERAYLQGLIDDYYETFVDRVSDGRDMDPEFVRD-TEARIYLGEEAHELGLVDELGTRR 274

Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           ++   L      ++   + +   P+      L            +       + GL A
Sbjct: 275 DLEDELTDQ--LETDEVVIEEFEPQRPLMARLGTG------AQQVAYAFGAGIAGLGA 324


>gi|302345567|ref|YP_003813920.1| signal peptide peptidase SppA, 67K type [Prevotella melaninogenica
           ATCC 25845]
 gi|302149332|gb|ADK95594.1| signal peptide peptidase SppA, 67K type [Prevotella melaninogenica
           ATCC 25845]
          Length = 592

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 72/276 (26%), Positives = 129/276 (46%), Gaps = 16/276 (5%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------------SQELIERIERISRD 63
           VT+  +  +   +  D    VA     G I D              +Q + + +E +++D
Sbjct: 286 VTIADMVNTEDKNQGDKENEVAVYYAYGDIVDGVVGGLFSQGHQIDAQVVCKDLEELAKD 345

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
               A++V ++S GGSAYA E I+  I ++K  KPV+  +  MAAS GY +S  +N IVA
Sbjct: 346 KDVKAVVVRVNSGGGSAYASEQIWHQIMELKKLKPVVVSMGGMAASGGYYMSAPANWIVA 405

Query: 124 AETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
             T++ GSIG+   +P V   L +KLG+    VK++      +       + +  +   V
Sbjct: 406 EPTTITGSIGIFGMFPDVSGLLREKLGLKFDEVKTNKYADFGTRARPFTEEEMSYLSQYV 465

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           +  Y  F   V+E R +   +   ++ G ++TG +A+K+GL+D +GG +        L  
Sbjct: 466 NRGYKLFRHRVAEGRKMTEKQVEKVAQGHVFTGQDAQKIGLVDQLGGLDVAVAKAAQLAK 525

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278
             + RK   +    N+    ++  + ++ L   +  
Sbjct: 526 LPNYRKCA-YPKEPNFLEQMMEQTNPNNYLSQQLRA 560



 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 95/260 (36%), Gaps = 24/260 (9%)

Query: 14  MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQELI 54
           + +L T+  +  S  +  E     +  + + GQ+                       +++
Sbjct: 24  LFALFTIVGMIASQDTTKEPEDNSILVLNLSGQMSERSENNFLSQLQGSQINSLGLDDML 83

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
           E I +   +D    + +   +    +YA  +A+ +A+   K  +  I    +      Y 
Sbjct: 84  EGIRKAKDNDKIKGIYIEAGAFASDSYASMQALRKALLDFKKSRKWIIAYADTYTQGTYY 143

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVN 171
           +S  ++ +       +   G+  +  ++K  L K GV ++ VK    K+    F   +++
Sbjct: 144 LSSVADKVYLNPQGQIDWHGLASEPVFIKDLLAKFGVKMQVVKVGAYKSATEMFTGDKMS 203

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG--AEAKKVGLIDVVGG 229
               +     ++S +    + V  SR +   +    +D  I      E  K+ L+D +  
Sbjct: 204 DANREQTSAYLNSIWGNITKEVGASRGLSVAQLNAYADSMITFADPQEYVKLKLVDGLVY 263

Query: 230 QEEVWQSLYALGVDQSIRKI 249
            +++   +      ++ + I
Sbjct: 264 TDQIKGIVKKQLGIEADKDI 283


>gi|119503764|ref|ZP_01625846.1| signal peptide peptidase SppA, 67K type [marine gamma
           proteobacterium HTCC2080]
 gi|119460272|gb|EAW41365.1| signal peptide peptidase SppA, 67K type [marine gamma
           proteobacterium HTCC2080]
          Length = 609

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 125/284 (44%), Gaps = 13/284 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATA 68
           ++        S    D+   +A I   G I + +          ++++I +   D+   A
Sbjct: 306 ISYGKYAKQISDDYLDSGHQIAVITAEGVIREGEISPGVAGANGVVKQIRKAHEDEDTKA 365

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETS 127
           ++  ++SPGGS  A E +   +   K +   VI  + + AAS G  IS  ++ I A  T+
Sbjct: 366 IVFRVNSPGGSIIASEMMRDELLAAKRKGIKVIVSMGDYAASGGVYISTPADYIFAEPTT 425

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           + GSIGV    P ++  +D +GV+   V +S       P   ++    ++      ++Y 
Sbjct: 426 ITGSIGVAIALPTLENAMDYIGVNFDGVVTSKH-GGWDPTQAIDDDLDKIFASWGSAAYD 484

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F+  V+ESR+  YD    ++ GR+W    AK +GL+D +GG ++      +L   +   
Sbjct: 485 RFINFVAESRSQTYDDIKAVAGGRVWIATSAKDIGLVDEIGGIDDALTYAASLAELED-Y 543

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
           +++ +    +     LK L     +    P +    + G+  ++
Sbjct: 544 QVEYYGQELSPEEMILKELLEQLDVSIGEPKVLSA-LDGIARLY 586



 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 96/278 (34%), Gaps = 33/278 (11%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ----------------- 51
            T  V+  ++ +     +    VED S     I  +G + D +                 
Sbjct: 27  TTLIVVFLVIAIIEALTASGPDVEDPSGKALLIDPKGMVVDQEVFNSESLLTTVTDSSST 86

Query: 52  -----ELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHE 105
                +L++ I   + DDS  A++V  SS G         I + ++ +++    +   ++
Sbjct: 87  QIQTRDLVKLIRAAAEDDSIPAVVVDFSSTGFAGPTTAINIAKELKALRDSGKRVIAFND 146

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK--AE 163
             ++  YL++  ++ +       +   G+     Y K   + L ++I +      K   E
Sbjct: 147 RLSTTSYLMASQASEVWVHPVGSISVRGLGGMRNYNKDLFENLKITIHNYSQGDFKSATE 206

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGAE----- 217
            S  S ++       + ++   +     L++E R I  D     +D  + + G       
Sbjct: 207 TSWRSNMSENDRMQREALLFPIWEEMKSLMAEGRGIASDDIQSFADNYVGFFGEAAIGNI 266

Query: 218 --AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
             A+   +ID      E  Q +          + + + 
Sbjct: 267 AYAQANNIIDGTKSFPEFRQYMIEEFGLDEEAETQTYK 304


>gi|78189660|ref|YP_379998.1| peptidase S49, protease IV [Chlorobium chlorochromatii CaD3]
 gi|78171859|gb|ABB28955.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Chlorobium chlorochromatii CaD3]
          Length = 601

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 115/269 (42%), Gaps = 12/269 (4%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQELIE----------RIERISRDDSATALIVSLSSPGG 78
                 S  +A I + G I  S + ++           +E    + S  A+++ + SPGG
Sbjct: 296 PQHSSTSDAIAVITMSGPIMRSVDNLDDGIDVATMQHSLEAALENKSVKAIVLRIDSPGG 355

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            A A   I + I     +K ++  +  +AAS GY+++     IVA   ++ GSIGV    
Sbjct: 356 EAIASADILQMINAAATKKTLVVSMSGVAASGGYMVALGGKTIVAHPLTITGSIGVYALK 415

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P ++   +K+G+  + +         SPF+ +  +A           Y+ F+  V+ SR 
Sbjct: 416 PTIQGLAEKVGLQREVITRGRFADATSPFTPLEGEAYNKFVASAGDVYNDFISKVATSRR 475

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK--IKDWNPPK 256
           +       ++ GR+WTG+ AK+VGL+D +GG  +              ++  I  +   +
Sbjct: 476 MKVTAVDSVAGGRVWTGSRAKQVGLVDRMGGLFDALALAKERAGISKDKEPTILLYPLQQ 535

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
            +    L   +++S+ +     +    + 
Sbjct: 536 GWLQSLLGGATLNSVTKAIATALLGNVLP 564



 Score = 85.4 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 108/250 (43%), Gaps = 21/250 (8%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE------------------DSQEL 53
           ++++ L  +  +++++ S  +     V  + + G++                     QE+
Sbjct: 21  FLVVPLFIVVALFWAFRSSHDMPDRFVLVVPLSGKLAEVNNERSSLPFMPSQGDLSLQEV 80

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
           +  +   ++D+  + +++ L     +      +  A+  V+ +   ++     A  + YL
Sbjct: 81  LFVLHEAAKDEQVSEVLLQLDGVEAAPAKIAEVRAAVADVRRKGKKVSAFLYRAEDSDYL 140

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN-- 171
           ++ A++ I+    + +   G+  +  +    L+KLG+++++ +    K+   PF+  +  
Sbjct: 141 LATAADTIIMQRGASLLLDGLKAESLFYTGTLNKLGITVQAAQWKEYKSGIEPFTRTSAS 200

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGGQ 230
            +  + +  ++D  Y+ ++  VSE R I       + +   + +   AK +GL+D +   
Sbjct: 201 KEYREQINMLLDDVYNNYLSAVSERRKISRSAFEAIINNEALLSAERAKALGLVDRIATF 260

Query: 231 EEVWQSLYAL 240
            +V +S+   
Sbjct: 261 WDVERSMTKQ 270


>gi|329769509|ref|ZP_08260919.1| hypothetical protein HMPREF0433_00683 [Gemella sanguinis M325]
 gi|328838724|gb|EGF88322.1| hypothetical protein HMPREF0433_00683 [Gemella sanguinis M325]
          Length = 322

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 125/253 (49%), Gaps = 11/253 (4%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQ-------ELIERIERISRDDSATALIVSLSSPGGSAYA 82
                S  + +I++ G+I            +I +I+  S D +  A+++S+++PGG  Y 
Sbjct: 56  KEGSGSEVIQKISVEGEIGSEMTNTYSRGSIINQIKVASADPNVKAILLSVNTPGGGVYE 115

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
              I+ A++   + K V   + + A S GY IS A+  I A   +  GSIGV+  Y   +
Sbjct: 116 TAEIYNALK--NSGKDVYVAMKKQATSGGYYISMAAKKIYANSETTTGSIGVIMSYVSAQ 173

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
            FL++ G+  ++++S   KA      ++     ++ Q+    +Y  FV+ ++E RN+  D
Sbjct: 174 KFLNEHGIKQETIRSGDQKAIGGLAEDLPESTRKIYQEQNKEAYDRFVKAIAEGRNMSED 233

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDWNPPKNYWF 260
           +   L+DGR ++G +A +  L+D +G ++E+   +         S+ +++  +  ++   
Sbjct: 234 EVKKLADGRTYSGKQAVENKLVDKIGTEDELINLIKEEKNLSNPSVIELRKDSSSESILS 293

Query: 261 CDLKNLSISSLLE 273
             +K  + S + E
Sbjct: 294 RLVKATTRSIISE 306


>gi|113461051|ref|YP_719118.1| protease IV family protein [Haemophilus somnus 129PT]
 gi|112823094|gb|ABI25183.1| protease IV family [Haemophilus somnus 129PT]
          Length = 621

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/265 (23%), Positives = 133/265 (50%), Gaps = 17/265 (6%)

Query: 5   LKKIKTRYVM-----LSLVTLTVVYFSWSSHVEDN-SPHVARIAIRGQIEDSQE------ 52
            +KI  R+++     L  V          +       P +A + + G I D +       
Sbjct: 287 REKIIKRWIVNSDDKLDFVEFEDYLAILKNRFAQPTQPAIAVVNVEGAIVDGESDEQNVG 346

Query: 53  ---LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAA 108
              + + +   + + +  A+++ ++SPGGSA+A E I + +  ++   KPV+  +  +AA
Sbjct: 347 GDSIAQLLREANDEPNIKAVVLRVNSPGGSAFASEIIRQEVDNLQKSGKPVVVSMGAIAA 406

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
           S GY IS  ++ IVA   ++ GSIG+   +P  +  + K+GV+   V ++ +  +   FS
Sbjct: 407 SGGYWISSTADYIVADPNTITGSIGIFAMFPTFEKSMQKIGVNADGVATTDVVMKSH-FS 465

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
            ++  + +++Q  ++  Y  F+ +VS  RN+   +   ++ G++W+G +A    L+D +G
Sbjct: 466 PLSKISSEIIQLEIEHGYDQFLDVVSRGRNLSKTQVDKIAQGQVWSGFDAYTYKLVDQLG 525

Query: 229 GQEEVWQSLYALGVDQSIRKIKDWN 253
             ++  +    L + +S  +IKD++
Sbjct: 526 SFDDAVEKARELVIQKSSEEIKDFS 550



 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 126/319 (39%), Gaps = 38/319 (11%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------ 51
           V+  +   +V+L +   +V     +     +      + + G + D++            
Sbjct: 22  VMNIVFLFFVLLIVAVFSVNSSMSNKVDLTHFKGALLLNLDGYLADNRSDDTAWQELLLE 81

Query: 52  -------------ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRK 97
                        +++  I+   +D   TAL++ L+   G    A   I +AIQ  K  K
Sbjct: 82  LGNQHVPRKISTFDVVNAIQAAKKDPKITALVLDLNYFDGKDIPALTYIGKAIQAFKASK 141

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +    +    + YL++  +++I+      V   G++ +  Y K   +KL ++    + 
Sbjct: 142 KPVIAYADNYTQSQYLLASYADVILLNPQGEVAIEGMVAENLYFKSLFNKLEITPHIFRV 201

Query: 158 SPMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-----LSDG 210
              K+   PF   +++ K+ +     ++  +  + ++V+E+R+IP  + L      LS+ 
Sbjct: 202 GTYKSAVEPFMLDKMSEKSRENTSRWLNQLWKSYQQIVAENRDIPLAQVLPDSKTYLSEL 261

Query: 211 RIWTGAE---AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           +   G +   AKK GLI  +   +E  + +    +  S  K+ D+   ++Y        +
Sbjct: 262 KALNGNQTEYAKKRGLITELAVTQE-REKIIKRWIVNSDDKL-DFVEFEDYLAILKNRFA 319

Query: 268 ISSLLEDTIPLMKQTKVQG 286
             +     +  ++   V G
Sbjct: 320 QPTQPAIAVVNVEGAIVDG 338


>gi|320156922|ref|YP_004189301.1| protease IV [Vibrio vulnificus MO6-24/O]
 gi|319932234|gb|ADV87098.1| protease IV [Vibrio vulnificus MO6-24/O]
          Length = 616

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/274 (23%), Positives = 127/274 (46%), Gaps = 13/274 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           ++      +   + + N+  +A +   G I D            +   + +   DD   A
Sbjct: 307 ISYYDYRATMRDNFDVNADDIAIVVASGTIMDGQQPRGTVGGDTVAGLLRQARNDDKVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   +Q +    KP++  +  +AAS GY IS +++ I+A  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEVQALKDAGKPIVVSMSSLAASGGYWISMSADKIIAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +   +KLG+    V +SP   E    + ++  A Q  Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGFNKLGIYTDGVGTSPFSGEGIS-TGLSKGASQAFQMGIEHGYQ 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI- 246
            F+ LVS++R++  D    ++ GR+WTG +A + GL+D +G  ++       +   ++  
Sbjct: 486 RFISLVSDNRDLSLDAVDKVAQGRVWTGYDALQHGLVDQIGDFDDAVAEAAKMAQLENYN 545

Query: 247 -RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
              +++   P   +  +       S+  D   ++
Sbjct: 546 LYWVEEPLSPTEQFIQEFMKQVKISMGVDIQSIL 579



 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/295 (18%), Positives = 104/295 (35%), Gaps = 40/295 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSS-HVEDNSPHVARIAIRGQIEDSQ-------- 51
           + FV   +     +LS+  +  VYF       +   P    + + G I +          
Sbjct: 19  ITFVRLALTNLIFLLSVALVYFVYFYGHDTQPQVEQPSALVLNLSGPIVEQSLYINPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93
                            ++++ I     D+  T L++SL   P  +      I +A+ + 
Sbjct: 79  FTSSLFGEEIPKENVLFDVVDTIRYAKDDEKITGLVLSLRDMPETNLTKLRYIAKALNEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     I  +      + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 139 KASGKPIYAIGAFYNQSQYYLASYADKIYLAPDGGVMLKGYSAFNLYYKTLLEKLDVTTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV----- 206
             +    K+   PF   +++P A +     +   +  FV  V+ +RNI            
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSPAAKESATRWLTQLWGAFVDDVANNRNIDPKTLNPSMEEF 258

Query: 207 LSDGRIWTGAEA---KKVGLIDVVGGQEEVWQSLYAL---GVDQSIRKIKDWNPP 255
           LS  +   G  A    K+GL+D +  ++++   L        D S + I  ++  
Sbjct: 259 LSQLKSVNGDLAALSIKLGLVDELATRQQLRAQLAEKFGASGDDSYKAISYYDYR 313


>gi|119486156|ref|ZP_01620216.1| protease IV [Lyngbya sp. PCC 8106]
 gi|119456647|gb|EAW37776.1| protease IV [Lyngbya sp. PCC 8106]
          Length = 273

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 73/265 (27%), Positives = 135/265 (50%), Gaps = 9/265 (3%)

Query: 36  PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
             +ARI + G I     + ++E ++ I       AL++ + SPGG+    + I+ A++K+
Sbjct: 11  KQIARIEVTGVIASDTRKRVLEALKTIEE-RKYPALLLRIDSPGGTVADSQEIYSALKKL 69

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           +++  ++     ++AS G  I   +  I+A   ++ GSIGV+ +   ++  LDK+GVS K
Sbjct: 70  QDKLKIVASFGNISASGGVYIGMGAQHIMANPGTITGSIGVIIRGNNIEGLLDKVGVSFK 129

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
            +KS P K   +   ++     Q++Q+++D+SY  FV  V+ESRN+        +DGRI+
Sbjct: 130 VIKSGPYKDILAFDRQLTDPEKQILQELIDTSYRQFVITVAESRNLEETAVRSFADGRIF 189

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLKNLSIS--- 269
           TG +A ++G+ID +G +EE       L   D    +      PK+     L N ++    
Sbjct: 190 TGEQALELGVIDRLGTEEEARCWAAELVNLDPDKTECDTLEKPKSLVSRVLSNNNLETSR 249

Query: 270 -SLLEDTIPLMKQTKVQGLWAVWNP 293
            +  ++ +     T    LW ++ P
Sbjct: 250 LASAKNWLEFELSTSGLPLW-LYRP 273


>gi|269138839|ref|YP_003295540.1| periplasmic serine protease (ClpP class), protease IV [Edwardsiella
           tarda EIB202]
 gi|267984500|gb|ACY84329.1| periplasmic serine protease (ClpP class), protease IV [Edwardsiella
           tarda EIB202]
 gi|304558830|gb|ADM41494.1| Protease IV [Edwardsiella tarda FL6-60]
          Length = 617

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/270 (24%), Positives = 123/270 (45%), Gaps = 14/270 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGS 79
                 +  +A I   G I D +             +I +   D +  A+I+ ++SPGGS
Sbjct: 318 KPKPTGNGQIAVIFASGPIIDGEATPGSVGGDTTAAQIRQARLDPAIRAIILRVNSPGGS 377

Query: 80  AYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I  A+   +   KPV+  +  +AAS GY IS  +N I+A+ ++L GSIG+    
Sbjct: 378 VTASEEIRSALAAARDAGKPVVVSMGGLAASGGYWISTPANAIIASPSTLTGSIGIFGVI 437

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  L +LGV    V +SP+    +    +      +MQ  +++ Y  F+ LV+ +R+
Sbjct: 438 NTFEKPLSQLGVYTDGVATSPLADT-ALTKALPQSVSDLMQLTIENGYQRFISLVATARH 496

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
               +   ++ GR+W G +AK  GL+D +G  ++       L       +++ +    N 
Sbjct: 497 KTPAQIDSIAQGRVWLGVDAKANGLVDRLGDFDDAVSQAATLAGI-KQPQLRWY--VDNP 553

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
            F ++    ++S ++ ++P   Q  +    
Sbjct: 554 SFSEMVFSQLTSSVQASLPQALQGMIPASL 583



 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 96/252 (38%), Gaps = 22/252 (8%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASA 110
           +L+E + +   D + T L++SL++  G+     + I +A+ + +     I  V E    A
Sbjct: 98  DLVETLRQAKSDPNITGLVLSLNNFAGADQPSLQYIGKALAEFRASGKPILAVGESYTQA 157

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FS 168
            Y ++  +N I  +    VG  G+     Y K  LDKL VS    +    K+   P    
Sbjct: 158 QYFLASYANKIYLSPQGSVGLQGMATNNLYYKSLLDKLDVSTHIFRVGTYKSAVEPLMRD 217

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT----LVLSDGRIWTG----AEAKK 220
           +++P+A       ++  ++ ++  V+ +R++  ++       +  G   TG      A  
Sbjct: 218 QMSPQARSADSQWLNGMWNNYLATVAANRHLTPEQVFPGAEQMLKGLQATGGDMAQYAVL 277

Query: 221 VGLIDVVGGQEEVWQSLYA------LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLED 274
             L+D +  + EV   L           D     + D+             +  +S    
Sbjct: 278 HRLVDGLASRSEVEGILSKQFGWDTRARDYRHISLYDYPLKPKPTGNGQIAVIFASG--- 334

Query: 275 TIPLMKQTKVQG 286
             P++      G
Sbjct: 335 --PIIDGEATPG 344


>gi|145588579|ref|YP_001155176.1| peptidase S49 [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145046985|gb|ABP33612.1| peptidase S49 [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 315

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 70/268 (26%), Positives = 123/268 (45%), Gaps = 14/268 (5%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIEDSQ-----ELIERIERISRDDSATALIVSLSSPGGS 79
           F           H A + + G+I  S      ++   +     ++ +  +I+ ++SPGGS
Sbjct: 53  FHLPGRGMGVEKHTAMVTLDGEISSSSMANAMDINSALTAAFENEHSAGVILRINSPGGS 112

Query: 80  AYAGEAIFRAI---QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
                 +   I   +K+   KP    V ++ AS GY ++ AS+ I+  + SLVGSIGV+ 
Sbjct: 113 PVQAGMMNDEIHRLRKLHPNKPFYVVVEDICASGGYYVAVASDQILVDKASLVGSIGVIM 172

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
           +       +DKLGV+ + + +   K    PFS+  PK V+M++ ++D  +  F+ +V E 
Sbjct: 173 EGFGFTGLMDKLGVTRRMITAGSNKGMLDPFSKEEPKQVEMVKTMIDEIHQQFIAVVKEG 232

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R     +T  L  GRIW G +A K+GL+D  G  + V + ++          I D+   +
Sbjct: 233 RGARLKETPDLFSGRIWNGEQAVKLGLVDGYGTVDSVARDIFK------APDILDYTQKE 286

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKV 284
           N+     K     +       L+K   +
Sbjct: 287 NFAERVAKRFGAEAGAAAGKALVKAPDL 314


>gi|42525822|ref|NP_970920.1| signal peptide peptidase SppA [Treponema denticola ATCC 35405]
 gi|41815872|gb|AAS10801.1| signal peptide peptidase SppA [Treponema denticola ATCC 35405]
          Length = 609

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 111/245 (45%), Gaps = 12/245 (4%)

Query: 34  NSPHVARIAIRGQIED-----------SQELIERIERISRDDSATALIVSLSSPGGSAYA 82
           +   +  I I G I             S ++++  +    D +  A++V ++S GG  +A
Sbjct: 321 SQNSIGVIHINGAISSTGTGRIDDSAVSYKIVDLFDIAQGDPTVKAIVVRVNSGGGEVFA 380

Query: 83  GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
            E I RAI + K    PV+  +  +AAS  Y IS +++ I A+  ++ GSIGVL   P  
Sbjct: 381 SEEIRRAIDRAKASGLPVVVSMGSVAASGAYWISSSADYIFASPYTITGSIGVLATAPSF 440

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
           K  + K       +  S  K   S   E +P+  ++ Q  V   Y  F+  V+  RN+P 
Sbjct: 441 KEAVKKYLGITSDLVYSGQKPSYSVLEEPSPEEKEVRQMEVMHIYKTFIETVARGRNLPE 500

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                L+ GR+++G +A  + L+D +G  +E  +    L        +K+   P  +   
Sbjct: 501 KTVEELAGGRVYSGEQALNLKLVDALGSLDEAVKYAAELANISGQYSVKEIKKPLPFTEA 560

Query: 262 DLKNL 266
            +K++
Sbjct: 561 LIKSI 565



 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 78/243 (32%), Gaps = 36/243 (14%)

Query: 29  SHVEDN-----SPHVARIAIRGQIEDSQ--------------------ELIERIERISRD 63
                      S  V  I   G + + +                    +L++ I+  + D
Sbjct: 48  PSNTKTVERVPSEAVLMINPSGVLTEKESDIFSAGIPAIGKKSAVLVSDLVKAIKNAAFD 107

Query: 64  DSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
              T+L +  S  GG S+     +  A++  KN    I       +   Y ++  ++ I 
Sbjct: 108 RRITSLYLDFSELGGLSSGHLSELGDALKVFKNSGKKIYAYAVGYSIPSYFLASYADRIG 167

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE--PSPFSEVNPKAVQMMQD 180
                 V   G   +  + K   +K G+    +++   K          ++      ++ 
Sbjct: 168 IDPLGEVSFAGFASRPVFFKGLEEKFGIKWNVIQAGTYKGMAETYSRDNLSQNVRTNLKS 227

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--------GAEAKKVGLIDVVGGQEE 232
           + D  ++ +   ++ +RN+P +K    ++                A + G +  +   +E
Sbjct: 228 MFDDLWNKYTSDIAANRNMPPEKIRAFAENNNALIKKYEGNGAKAALEEGFVTDIASVDE 287

Query: 233 VWQ 235
              
Sbjct: 288 FAA 290


>gi|86608144|ref|YP_476906.1| signal peptide peptidase SppA, 36K type [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556686|gb|ABD01643.1| signal peptide peptidase SppA, 36K type [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 384

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/329 (20%), Positives = 139/329 (42%), Gaps = 43/329 (13%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNS---------PHVARIAIRGQIEDS------ 50
           + +    +++ L+   V     +                  +  + + G I         
Sbjct: 48  RILAASLLVVCLIAAIVGGTRPAPEPTRGGVGLEAARGAERIEVVTLEGTIGGPGGSTLV 107

Query: 51  ---QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEM 106
                 +E++   +RD S  A+++ ++SPGG+  + + ++RA+  +    KPVI  +  +
Sbjct: 108 GLPTSPVEQLREAARDPSVKAVLLRINSPGGAVGSSQELYRAVTALHEADKPVIAILENI 167

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           AAS GY ++ A++ I A   +L GSIG +         L+  G+  ++ K+   K   SP
Sbjct: 168 AASGGYYVASAADKIYANPGTLTGSIGAIISGLSFGKLLENYGIEPQTFKTGEYKDLLSP 227

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------------------TLV 206
           F    P+  +++Q++V+ +   F+R V++ R    +K                       
Sbjct: 228 FRSATPQEQRLLQNLVEDTLEQFIRDVAQGRQHLPEKADEVLEAEMIARRQSLDEDRVRQ 287

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD----WNPPKNYWFCD 262
           L+DGRI+TGA+A +VGL+D +GG  E  + L  +  D S+    +        +      
Sbjct: 288 LADGRIFTGAQAVEVGLVDALGGYTEAVEDLRRMTGDPSLSPAGEGEGFQRVLRRLLSQG 347

Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
           L +   ++ L   +   +   +  +  +W
Sbjct: 348 LSSQRQAAWLGRLLESNEAVGIPDVPLLW 376


>gi|163801948|ref|ZP_02195845.1| cytoplasmic asparaginase I [Vibrio sp. AND4]
 gi|159174456|gb|EDP59260.1| cytoplasmic asparaginase I [Vibrio sp. AND4]
          Length = 616

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 128/285 (44%), Gaps = 13/285 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           +       + + ++      +A +   G I D            +   + +   DD   A
Sbjct: 307 IGYYDYLATMAPNLTPAVDDIAVVVASGAIMDGQQPRGTVGGDTVASLLRQARNDDKVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   ++ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEVEALKEAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +   +KLG+S   V +SP  +     + ++  A Q  Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGFNKLGISTDGVGTSPF-SGDGITTGLSDGASQAFQLGIEHGYK 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI- 246
            F+ LV  +R +  ++   ++ GR+WTG +A   GL+D +G  ++  Q    L   ++  
Sbjct: 486 RFISLVGSNREMSLEEVDKVAQGRVWTGQDAMSFGLVDQMGDFDDAVQLAAKLAEVENYQ 545

Query: 247 -RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
              +++   P   +  +  N    SL  D    + ++       +
Sbjct: 546 LYWVEEPLSPAEQFVQEFMNQVKVSLGIDATSFLPKSLQPVAQQL 590



 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 92/284 (32%), Gaps = 37/284 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + FV   +     ++ +      + ++              + + G I + +        
Sbjct: 19  ITFVRLALANLIFLVMIAVFYFAFSYTGEDKPAIEKESALVMNLSGPIVEQRRYVNPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93
                            ++++ I     D   + L+++L   P  +      I +A+ + 
Sbjct: 79  VAGSILGNEMPKENVLFDIVDTIRYAKDDPKVSGLVLALRDMPETNLTKLRYIAKALNEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ I  A    V   G      Y K  LDKL VS  
Sbjct: 139 KTSGKPVYAVGDFYNQSQYYLASYADKIFLAPDGGVLIKGYSSYSMYYKALLDKLDVSTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF   +++  A +     +   +  FV  V+ +RNI         D  
Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESATRWITQLWDAFVDDVATNRNIDAKALNPTMDEL 258

Query: 212 I--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           +             A K+GL+D +  +++V +            
Sbjct: 259 LTEIKSVDGDLAQLAVKMGLVDELATRQDVRKRFAKEFGSDGKD 302


>gi|78185347|ref|YP_377782.1| peptidase S49, SppA [Synechococcus sp. CC9902]
 gi|78169641|gb|ABB26738.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49
           [Synechococcus sp. CC9902]
          Length = 270

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/259 (24%), Positives = 127/259 (49%), Gaps = 6/259 (2%)

Query: 39  ARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           ARI + G I  +  Q +++ +  + R +   AL++ + SPGG+    + I  A+ +++ +
Sbjct: 14  ARIVVEGPINGATRQRVLKALLEVKRRE-FPALLLRIDSPGGTVGDSQEIHAALLRLREK 72

Query: 97  K-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
              V+     ++AS G  I   +  IV+   ++ GSIGV+ +   +    +++G+   +V
Sbjct: 73  GCRVVASFGNISASGGVYIGVGAEKIVSNPGTITGSIGVILRGNDLSRVFERIGIRFDTV 132

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215
           KS   K   SP   +NP+   ++Q ++DSSY  FV +V++ RN+  +     +DGR+++G
Sbjct: 133 KSGKFKDILSPDRALNPEERALLQGLIDSSYSQFVGVVAKGRNLTEETVKTFADGRVFSG 192

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSISSLLED 274
            +A  +GL+D +G ++   +    L        +      P+      L    + S L+ 
Sbjct: 193 EQALSLGLVDELGDEDHALRLAAQLADLDQDDIRPITLGKPRRKVSNLLPGSQLFSQLQQ 252

Query: 275 TIPLMKQTKVQGLWAVWNP 293
            + +      Q LW ++ P
Sbjct: 253 WLTMELMGSGQVLW-LYRP 270


>gi|15678828|ref|NP_275945.1| protease IV [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621896|gb|AAB85306.1| protease IV [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 287

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/272 (24%), Positives = 134/272 (49%), Gaps = 13/272 (4%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI----------EDSQELIE 55
           +  K    +++++++  +  S +  +E     +A I + G I           D  ++ E
Sbjct: 3   RNSKIVVGLVAVLSIAGLVLSLAGLLEGGEGTIAIIPVHGAIAYDTAGFSDGVDPDDIKE 62

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
            I   + D S  A+++ ++SPGG+  A E +  AI K  + KPV++ + +   S  YL +
Sbjct: 63  LIAEANSDPSVKAIVLDINSPGGTPVASEELMDAINK--SEKPVVSWISDSGTSGAYLAA 120

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            AS+ IVA+ ++ VGSIGV+     +     ++G++  ++K+   K   + +  +  +  
Sbjct: 121 SASDRIVASPSAWVGSIGVILDLTDLSQMYRQMGINKYAIKAGEYKDMGADYRMITDEER 180

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           QM+Q +V+  Y +F++ V+ +RN+       L++GRI+TG +A +  L+D  GG++   +
Sbjct: 181 QMLQSMVNEEYDYFIKTVAANRNLSVSYVKSLAEGRIFTGRQAVRNRLVDFTGGKDYAVE 240

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
               L   ++   I    PP  +        S
Sbjct: 241 VAAKLAGVKNYNTI-TLEPPSGFLRVLSSMFS 271


>gi|37679336|ref|NP_933945.1| protease IV [Vibrio vulnificus YJ016]
 gi|37198079|dbj|BAC93916.1| protease IV [Vibrio vulnificus YJ016]
          Length = 626

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 129/282 (45%), Gaps = 14/282 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           ++      +   + + N+  +A +   G I D            +   + +   DD   A
Sbjct: 317 ISYYDYRATMRDNFDANADDIAIVVASGTIMDGQQPRGTVGGDTVAGLLRQARNDDKVKA 376

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   +Q +    KP++  +  +AAS GY IS +++ I+A  T+
Sbjct: 377 VVLRVDSPGGSAFASEVIRNEVQALKDAGKPIVVSMSSLAASGGYWISMSADKIIAQPTT 436

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +   +KLG+    V +SP   E    + ++  A Q  Q  ++  Y 
Sbjct: 437 LTGSIGIFSVITTFEKGFNKLGIYTDGVGTSPFSGEGIS-TGLSKGASQAFQMGIEHGYQ 495

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI- 246
            F+ LV ++R++  D    ++ GR+WTG +A + GL+D +G  ++       +   ++  
Sbjct: 496 RFISLVGDNRDLSLDAVDKVAQGRVWTGYDALQHGLVDQIGDFDDAVAEAAKMAQLENYN 555

Query: 247 -RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
              +++   P   +  +     +   +   I  +  + +Q +
Sbjct: 556 LYWVEEPLSPTEQFIQEFMK-QVKISMGVDIQSILPSSLQPV 596



 Score = 95.8 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 57/329 (17%), Positives = 115/329 (34%), Gaps = 43/329 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSS-HVEDNSPHVARIAIRGQIEDSQ-------- 51
           + FV   +     +LS+  +  VYF       +   P    + + G I +          
Sbjct: 29  ITFVRLALTNLIFLLSVALVYFVYFYGHDTQPQVEQPSALVLNLSGPIVEQSLYINPMDS 88

Query: 52  -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93
                            ++++ I     D+  T L++SL   P  +      I +A+ + 
Sbjct: 89  FTSSLFGEEIPKENVLFDVVDTIRYAKDDEKITGLVLSLRDMPETNLTKLRYIAKALNEF 148

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     I  +      + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 149 KASGKPIYAIGAFYNQSQYYLASYADKIYLAPDGGVMLKGYSAFNLYYKTLLEKLDVTTH 208

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV----- 206
             +    K+   PF   +++P A +     +   +  FV  V+ +RNI            
Sbjct: 209 VFRVGTYKSAIEPFVRDDMSPAAKESATRWLTQLWGAFVDDVANNRNIDPKTLNPSMEEF 268

Query: 207 LSDGRIWTGAEA---KKVGLIDVVGGQEEVWQSLYAL---GVDQSIRKIKDWNPP---KN 257
           LS  +   G  A    K+GL+D +  ++++   L        D S + I  ++     ++
Sbjct: 269 LSQLKSVNGDLAALSIKLGLVDELATRQQLRAQLAEKFGASGDDSYKAISYYDYRATMRD 328

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
            +  +  +++I       +   +     G
Sbjct: 329 NFDANADDIAIVVASGTIMDGQQPRGTVG 357


>gi|205352978|ref|YP_002226779.1| protease 4 [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|205272759|emb|CAR37677.1| protease IV [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|326628052|gb|EGE34395.1| protease 4 [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 618

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/268 (26%), Positives = 120/268 (44%), Gaps = 14/268 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +A I   G I D +E            +I     D     +++ ++SPGGS
Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKTIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  L  +GV    V +SP+    S    ++P+  QMMQ  ++  Y  F+ LV+++R 
Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        +  +      
Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556

Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284
               + +++ S  ++L + I  M    +
Sbjct: 557 LDMVMDSMTGSVRTMLPEAIQAMLPAPL 584



 Score =  100 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +       S+ E  +     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90
                               +++  I +   D + T +++ L +  G+       I +A+
Sbjct: 79  ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  VS +R I   +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             + DG       T   A    L+D +    +V ++L     
Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300


>gi|254428559|ref|ZP_05042266.1| peptidase, S49 (protease IV) family [Alcanivorax sp. DG881]
 gi|196194728|gb|EDX89687.1| peptidase, S49 (protease IV) family [Alcanivorax sp. DG881]
          Length = 324

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 122/282 (43%), Gaps = 16/282 (5%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISRDDSA 66
           ++ L  + + V+     S V     HV  + + G I   Q+     ++  + R    ++ 
Sbjct: 45  FIYLFTLLVMVIPGKTGSAVTMAEEHVGIVDVNGVIAPDQDASADLIVTGLTRAFEAENT 104

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCASNIIVA 123
           TA+++ ++SPGGS      ++ AI+++      K V   + ++ AS  Y I+ A++ I A
Sbjct: 105 TAVLLKINSPGGSPVQSNQVYNAIKRLRAEYPDKKVYAAITDVGASGAYFIASAADEIYA 164

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
              S+VGSIGV+     ++   DKLGV  + + +   K    PFS + P   + +Q ++D
Sbjct: 165 DPASIVGSIGVIMAGFGLEQAADKLGVERRVLTAGENKDLMDPFSPIQPAHRKHVQTMLD 224

Query: 184 SSYHWFVRLVSESRNIPYDKT--LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
             +  F+  V E R           L  G  WTG  A  +GLID +    +V + +    
Sbjct: 225 DIHQQFITAVKEGRGDRLKVDSHPELFSGLFWTGERALDLGLIDGLMSPGQVIREVAGQ- 283

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
                 ++ +++  ++     ++   +S        L     
Sbjct: 284 -----EEMLNYSSSRSPMEEFIRRFGVSIGEGMAAQLGLSAS 320


>gi|315929657|gb|EFV08835.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni
           subsp. jejuni 305]
          Length = 281

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 126/265 (47%), Gaps = 2/265 (0%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64
           +K I T +    L+ + +     S++   N  ++ RI ++G+I DS  ++E+I     D 
Sbjct: 15  IKFINTYFKTFVLLLIVIWILIPSANSSSNLANLERIDLKGEIFDSSAVLEKIINAKNDS 74

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
           +   ++  + SPGG+      +  AI+ +K +KPV+       AS  YL    +N I+A 
Sbjct: 75  NIKGVLFVIDSPGGAFAPSMELALAIKDLKIKKPVLVYASGTMASGSYLAGVGANKILAN 134

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             S +GSIGV+ Q   +    +KLG+  +++++   K+  +     N      +Q ++D 
Sbjct: 135 PASFIGSIGVIMQGADLSGLANKLGIKEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQ 194

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           SY  F   V++ R +  +K    ++ R++  A+AK++GLID +   E   + L  L    
Sbjct: 195 SYDLFTGFVAKERALDLNKKDQWANARVFLAAKAKELGLIDELSNYENAKKELEKLANVS 254

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSIS 269
           +   +       + +   L+  + S
Sbjct: 255 N--PVWKEEDKIDKFLNRLEGQTSS 277


>gi|54309756|ref|YP_130776.1| putative protease IV [Photobacterium profundum SS9]
 gi|46914194|emb|CAG20974.1| putative protease IV [Photobacterium profundum SS9]
          Length = 617

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 121/270 (44%), Gaps = 17/270 (6%)

Query: 34  NSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           +   +A +   G I D                +     DD   A+I+ + SPGGSA+A E
Sbjct: 322 SDNQIAVVVASGAIIDGTQRQGTVGGDSTAALLRDARLDDDIKAVILRVDSPGGSAFASE 381

Query: 85  AIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
            I   +  + +  KPV+  +  +AAS GY IS +++ I+A  T++ GSIG+       + 
Sbjct: 382 VIRNEVDALKQAGKPVVVSMSSVAASGGYWISASADRIIAQPTTITGSIGIFAILTTFEK 441

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L+K+GV    V ++P  +      E+     Q+ Q  V+  Y  F+ LVS+ RN+  ++
Sbjct: 442 GLEKMGVYSDGVGTTPF-SGVGVTRELPEGVGQVFQLGVEHGYKRFISLVSQYRNMSLEQ 500

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ GR+WTG +A ++GL+D +G  ++   +   L       ++     P +     L
Sbjct: 501 ADKIAQGRVWTGQDAMELGLVDQLGDFDDAIAAAVELAKL-ESYELNWMEEPLSTAEQFL 559

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
                SS +   +  M   ++        P
Sbjct: 560 --QQFSSDVSTKVATMVLGQLPSAL---QP 584



 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 109/327 (33%), Gaps = 39/327 (11%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + F  + I   + ++ +  + V +       E        + + G I + +         
Sbjct: 19  ISFTRQLILNLFFLIIVGAIFVAFNYGEDTPEQPDKAALVLDLSGPIVEQRRYINPIDSI 78

Query: 52  ----------------ELIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVK 94
                           ++ E I + S D+    L+++L      S      I +AI + K
Sbjct: 79  ASNVLGHPPAQDNVLFDITETIRKASADNKIEGLVLNLKGMSETSLTKLRYIAKAITEFK 138

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
                +    +    + Y ++  ++ +  +    V   G      Y K  L+KL V+   
Sbjct: 139 AAGKPVYAYGDNFGQSQYYLASYADKVFMSPDGGVMLTGYGSYSLYYKSLLEKLNVNTHV 198

Query: 155 VKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP--------YDKT 204
            +    K+   P+   +++  A +     ++  +  F   V+ +R+I          D  
Sbjct: 199 FRVGTYKSFVEPYTRDDMSAPAREANTVWLNQLWGAFTTDVANNRHIDAATLTPNIDDFV 258

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI---RKIKDWNPPKNYWFC 261
             L          + K+GL+D +  + ++   +             +I  +         
Sbjct: 259 QALKAVDGDFAKLSLKMGLVDELISRPQLRNKMIKEFGSDGEHSFNQISYYEYQPTIINT 318

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           DL + +  +++  +  ++  T+ QG  
Sbjct: 319 DLPSDNQIAVVVASGAIIDGTQRQGTV 345


>gi|17232082|ref|NP_488630.1| protease IV [Nostoc sp. PCC 7120]
 gi|17133726|dbj|BAB76289.1| protease IV [Nostoc sp. PCC 7120]
          Length = 609

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 119/266 (44%), Gaps = 9/266 (3%)

Query: 31  VEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAY 81
            +++   +A +   G I D                  +I +D++  A+++ ++SPGGSA 
Sbjct: 310 EKNSKNKIAVVYAEGDIVDGKGDDGQIGGDRFARIFNKIRQDENVKAVVLRINSPGGSAT 369

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
           A E + R I+  +  KPV+  + + AAS GY I+  SN I A   ++ GSIGV       
Sbjct: 370 ASEVMQREIRLTRESKPVVVSMGDYAASGGYWIATDSNRIFAEPNTITGSIGVFGVLFNG 429

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
           +   +  G++  +VK++      +     +P+ + + Q  VD  Y+ FV  V++ R +P 
Sbjct: 430 QKLANDNGITWDAVKTARYADSQTVARPKSPQEIAIYQRSVDRIYNMFVNKVAQGRKLPT 489

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
            K   ++ GR+W+G  AK++GL+D +GG     +            +++++    ++   
Sbjct: 490 QKVAEIAQGRVWSGVTAKQIGLVDEIGGLNAAIEYAAKAAKLGKDWQLREYPRESSFEER 549

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287
               +         I  +       L
Sbjct: 550 FFGGVVEEISTTLGIKKLDVKPNDPL 575



 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 93/234 (39%), Gaps = 5/234 (2%)

Query: 51  QELIERIERISRDDSATALIVSLS--SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
           + +I+ +E+  RD    A+ +  S         + + I +A+++ +     +        
Sbjct: 87  RNVIDSLEKAQRDKRIVAIYLDGSRGGNNLGFASLKEIRKALEEFRKSGKKVIAYGVAWD 146

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167
              Y +S  ++ I       +   G+  Q  ++   L K G+ ++ V++   K    PF 
Sbjct: 147 EKEYYLSSVADTIALNPLGGLEINGLSSQPMFLAGALQKYGIGVQVVRAGKFKGAVEPFL 206

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGAEAKKVGLID 225
             +++P+  +  Q ++D  +  +   V  SR I   K   ++D + +    EAK  GL+D
Sbjct: 207 LDKLSPENREQTQKLLDDVWGEWRTTVGNSRKINPQKLQAIADNQSLLEATEAKTNGLVD 266

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
            V   ++V   L  L               + Y     ++L +    ++ I ++
Sbjct: 267 QVAYNDQVVADLKKLTGSNKKDNTFTQISLRRYAQVPGQSLGLEKNSKNKIAVV 320


>gi|242310759|ref|ZP_04809914.1| protease IV [Helicobacter pullorum MIT 98-5489]
 gi|239523157|gb|EEQ63023.1| protease IV [Helicobacter pullorum MIT 98-5489]
          Length = 291

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/275 (25%), Positives = 135/275 (49%), Gaps = 6/275 (2%)

Query: 2   EFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERIS 61
           +F++K  K   ++     +  + F+ S    +N  +VARI ++G I  S   +E I  + 
Sbjct: 12  DFIMKYFKALVLL----LIVFLIFAPSFKESENPANVARIDLKGAILQSDSFLEEITELE 67

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
            + +   +++ + SPGG+      I + I+++KN+KP++       AS  Y+    +N I
Sbjct: 68  NNPNIKGILLVIDSPGGAIAPSVEISQTIKRIKNKKPIVAYAQGSMASGSYMAGMWANKI 127

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
           VA   S++GSIGV+     V    +KLG+  + +K+   K   +     N +  +M++++
Sbjct: 128 VANSGSMIGSIGVILNGVDVSELAEKLGIKTQILKAGIYKEAGTFMRPWNKQEEEMLRNL 187

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           ++  Y  FV+ V E+R +   K    + GRI +   A K+GLID VGG  E   +L+ L 
Sbjct: 188 INEQYWLFVKEVVEARKLDIKKEKDFAQGRILSANNALKLGLIDSVGGIYEAQNTLFELA 247

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
             +    +K      + +   +   ++S  ++  I
Sbjct: 248 KIEEPMWLK--KDKMDLYLERIIGENVSLGIQRAI 280


>gi|251789811|ref|YP_003004532.1| signal peptide peptidase SppA, 67K type [Dickeya zeae Ech1591]
 gi|247538432|gb|ACT07053.1| signal peptide peptidase SppA, 67K type [Dickeya zeae Ech1591]
          Length = 616

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 117/267 (43%), Gaps = 14/267 (5%)

Query: 30  HVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSA 80
               ++  +A +   G I D               +I     D    A+I+ ++SPGGS 
Sbjct: 318 PPAVSTNEIAVVFASGTIVDGNETPGYVGGDTTAAQIRDARLDPKVKAIILRVNSPGGSV 377

Query: 81  YAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
            A E I   +    +  KPV+  +  MAAS GY +S  +N+I+A+ ++L GSIG+     
Sbjct: 378 TASELIRSELMAARQAGKPVVVSMGGMAASGGYWVSTPANVIIASPSTLTGSIGIFGVVT 437

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
             +  LD +GV    V +SP+         +  +A Q+MQ  ++  Y  F+ LV++SR  
Sbjct: 438 TFENALDSIGVHTDGVATSPLADLSQT-KALPSQASQLMQISIERGYQNFISLVAQSRRK 496

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
              +   ++ G +W G++AK  GL+D +G  ++  +    L       ++  +    +  
Sbjct: 497 TTQEVDAIAQGHVWVGSDAKTNGLVDQLGDFDDAVKKAAELAKL-EQYQLSWYTEESDLL 555

Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQG 286
             +     + S +   +P   Q  +  
Sbjct: 556 --NAMFTQVRSAVYAMLPSALQAVIPA 580



 Score = 95.8 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 103/298 (34%), Gaps = 44/298 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + F  + I   +++  ++    VY    +   + +     + + G + D           
Sbjct: 19  LNFTREFILNLFLICLILVGIGVYSQLKTPQAEPARGALLLDLTGVVVDKPSVNNKLRQF 78

Query: 52  ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92
                             ++++ I +   D + T +++ LS   G+     + I +A+++
Sbjct: 79  GREFFGVSASRHQENSLFDIVDSIRQAKDDSNITGMVMDLSDFVGADQPSLQYIGKALRE 138

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            ++    I  V +      Y ++  +N I       +   G      Y K  LDKL V+ 
Sbjct: 139 FRDAGKPIFAVGDNFNQTQYYLASFANKIYLTPQGNIDLHGFATNNLYYKTLLDKLKVTA 198

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203
              +    K+   PF   +++P A +     + + +  ++  V+ +R I   +       
Sbjct: 199 HIFRVGTYKSAVEPFIRDDMSPDAREADNRWISTLWQHYLDTVAANRQITPQQLFPGAEK 258

Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA------LGVDQSIRKIKDWNP 254
               L      T   A    L+D V  +  V Q+L           + +   I D+ P
Sbjct: 259 ILANLQTVDGDTARYALDNKLVDEVASRSMVEQALIKAFGWDAKTKNFNFTSIYDYTP 316


>gi|118581390|ref|YP_902640.1| signal peptide peptidase SppA, 36K type [Pelobacter propionicus DSM
           2379]
 gi|118504100|gb|ABL00583.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Pelobacter propionicus DSM 2379]
          Length = 320

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/282 (23%), Positives = 124/282 (43%), Gaps = 20/282 (7%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE---------------LIERIERISRDDSATALIVSLSS 75
             + +  +  + I G I + ++               + E +++  +DD    +I+ + S
Sbjct: 40  EGEGAKKILLLDISGTISEKEKPGGLVGADRPSTVSLIREALQKAEKDDRIAGVILRIDS 99

Query: 76  PGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           PGGS  A + I   I + K R+  PV   +  + AS GY  + A++ I+A  T++ GSIG
Sbjct: 100 PGGSVTASDIIHHDITEFKKRRRIPVHACIMGVGASGGYYAAAAADRIIAHPTAITGSIG 159

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V+     +   L KLG+  ++VKS   K   S F    P+  ++ Q++++  +  F+ +V
Sbjct: 160 VILMKFNLAGLLGKLGIEEQAVKSGDKKDFFSLFRRATPEEEKLAQEIINQLHSRFLDVV 219

Query: 194 SESRNIPY--DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
            +        D+   L+DGRI+T  +A +  L+D  G  ++V  ++     D    ++  
Sbjct: 220 MQRPGNRLSRDELARLADGRIYTAGQALQARLVDGTGYLDDVISAMRKQIKD-EQARVVS 278

Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
           +  P +Y           S L   +    +        +W P
Sbjct: 279 YYRPGSYLGSIYDGREAKSSLVGMLGATSEFSGGSFMYLWQP 320


>gi|260911480|ref|ZP_05918069.1| signal peptide peptidase SppA [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634409|gb|EEX52510.1| signal peptide peptidase SppA [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 591

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/277 (24%), Positives = 132/277 (47%), Gaps = 17/277 (6%)

Query: 30  HVEDNSPHVARIAIRGQIED--------------SQELIERIERISRDDSATALIVSLSS 75
            V  ++  +A     G+I                S+++ + +E +  DD   A+++ ++S
Sbjct: 296 DVNTDNGTIAIYYAEGEIVQIAPGGMLNNSTNIVSKDICKNLEDLKNDDDIKAVVLRVNS 355

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           PGG AYA E I+  + +++ +KPV+  + + AAS GY +SC +N IVA   +L GSIG+ 
Sbjct: 356 PGGDAYASEQIWHQVTELRKKKPVVVSMGDYAASGGYYMSCGANWIVAEPNTLTGSIGIF 415

Query: 136 FQYPYVKPFL-DKLGVSIKSVKSSPM-KAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
             +P +   + +KLGV    VK++             +   + M+Q  V+  Y  F+  V
Sbjct: 416 GVFPDLSGLVTEKLGVKFDEVKTNANSAFGNIAARPFSATEMAMLQGYVNRGYATFLNRV 475

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           S+ R +  D    ++ GR+W G EA K+ L+D +GG +E  +    L   +    + ++ 
Sbjct: 476 SQGRKMSVDNIDKIAQGRVWLGNEALKIKLVDQLGGIKEAVEKAAQLAKLKD-YGLAEYP 534

Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
            P ++      ++   + L++ + L      +    +
Sbjct: 535 APASWQDQLFNSVVPRNTLDEQLRLTLGAAYEPFMLI 571



 Score = 93.5 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 90/271 (33%), Gaps = 28/271 (10%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--------------- 47
           F+   I   ++M+S++ +     S  +  +     V  I + G I               
Sbjct: 16  FLFCAISFAFMMMSIIGMIA---STDTETKLKDNSVLTINLSGSINEMAAPNVLGFLSGN 72

Query: 48  ----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103
                   +++  I++   +D    + +            + +  A+   K     I   
Sbjct: 73  TIENTGLNDMLLAIKKAKNNDDIKGIYLEGGPLIAGFSTLQELRDALVDFKKSGKWIVAY 132

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
            +      Y ++  +N I       V   G+  Q  Y+K    K G+  +  K    K+ 
Sbjct: 133 ADTYTQGCYYVASVANHIYLNPQGQVDWHGLASQPYYIKDLAAKFGIKYQVAKVGTFKSA 192

Query: 164 PSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221
              F+E  ++      +   ++  +    + VSESR I        +D   +   +A+ +
Sbjct: 193 TEMFTETKMSDANRLQVSMYLNGLWTNVCKAVSESRKISIPTLNTYADEYQFFA-DAQSL 251

Query: 222 ---GLIDVVGGQEEVWQSLYALGVDQSIRKI 249
                +D +   ++V   +  L    + + I
Sbjct: 252 VRKRFVDKLLYADQVKGEVKKLLRIDADKSI 282


>gi|149910099|ref|ZP_01898746.1| putative protease IV [Moritella sp. PE36]
 gi|149806824|gb|EDM66786.1| putative protease IV [Moritella sp. PE36]
          Length = 620

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 74/275 (26%), Positives = 128/275 (46%), Gaps = 14/275 (5%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPG 77
           +      + P V  I   GQI D          + L + + +   D+   AL++ + SPG
Sbjct: 320 FEQQGFASKPGVGIIFANGQILDGNQPPGAIGGKSLTKLLLQAKDDEQIKALVLRIDSPG 379

Query: 78  GSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GSA+A E I  A+ ++K   KPVI  +  +AAS GY I+ A++ I A  T++ GSIG+  
Sbjct: 380 GSAFASEQIRTALLELKKSGKPVIVSMGSVAASGGYWIASAADEIWAKPTTITGSIGIFG 439

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
            +   +  L K+G+    V ++      S   E+     Q++Q  V++ Y  F+ +V+E 
Sbjct: 440 LFATTEKLLAKMGIYSDGVGTTDF-TGLSVNRELPEHMAQIIQMTVENGYSNFLTVVAEG 498

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R +  ++   ++ GR+WTG +A  +GLID +G  ++   S  A     +   I    P +
Sbjct: 499 RGMTTEEVDKIAQGRVWTGRDALNLGLIDNLGNLDDAIASAAAKVDVSTDSLILIQTP-R 557

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
           +     L   + S  ++  +         G  A W
Sbjct: 558 SERDRLLSIFTQSVAMQ--VLSELNISPNGNVATW 590



 Score = 73.5 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 113/336 (33%), Gaps = 50/336 (14%)

Query: 1   MEFVLKKI-----KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-------RIAIRGQIE 48
           + F+L KI      TR ++L+L  ++ +     +  +     VA        + + G + 
Sbjct: 8   LGFILSKIGRSITFTRNLILNLFFISFIAIIIIALQQQKETPVAFADNTALVLNLNGVLV 67

Query: 49  DS--------------------------QELIERIERISRDDSATALIVSLSSP-GGSAY 81
           D                            +++  I     DD+ +ALI+ L+     S  
Sbjct: 68  DQPKLVDPFDQVIGELVDANNVVNEIAISDVVNVIISAKSDDAISALILDLAQLKPASLT 127

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
               I  A+ + K     I    +  +   YL++  ++ I+      V   G      Y 
Sbjct: 128 KLTDIADALVEFKKSNKPIYAYGDYFSQEQYLLASFADEILLNPAGGVLLQGYGSYSLYF 187

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
           K  +DKL +S    +    K+   PF+  +++ ++ +   + ++  +  +  +V+ +R I
Sbjct: 188 KDAIDKLNLSSHVFRVGTYKSFVEPFTRSDMSAESKEAKLNWLNQLWDTYTSIVANNRLI 247

Query: 200 PYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY-ALGVDQSIRKIK 250
             D            L          A K  L+D +  +E++ + L   L  +       
Sbjct: 248 NADDVAPKADVFIKQLQSVNGNIAQYALKQKLVDKLLTREQITEYLANKLNGESDSFAKI 307

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           ++           +    +S     I       + G
Sbjct: 308 EFLDYLALQSTQFEQQGFASKPGVGIIFANGQILDG 343


>gi|282860141|ref|ZP_06269217.1| signal peptide peptidase SppA, 67K type [Prevotella bivia
           JCVIHMP010]
 gi|282587128|gb|EFB92357.1| signal peptide peptidase SppA, 67K type [Prevotella bivia
           JCVIHMP010]
          Length = 592

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 124/244 (50%), Gaps = 2/244 (0%)

Query: 44  RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103
           +G++ D+Q++ + + +++ ++S  A+++ ++S GGSAYA E I+  I ++K +KPV+  +
Sbjct: 326 QGEVIDAQKVCKDLAKLAEEESVKAVVLRINSGGGSAYASEQIWHQIMELKKQKPVVVSM 385

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKA 162
             +AAS  Y  S  +N IVA  T+L GSIG+   +P     L +KLGV    V ++   A
Sbjct: 386 GGLAASGAYYSSAPANWIVANPTTLTGSIGIFGMFPDTSGLLTEKLGVKFDEVATNKYAA 445

Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVG 222
             SP    N   ++++   +D  Y  F   V+E R +   +   L+ G ++TG  AK +G
Sbjct: 446 FGSPARPFNADELRILGQYIDRGYALFRHRVAEGRKMTEQQVEQLAQGHVYTGEYAKTIG 505

Query: 223 LIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282
           L+D +GG +        L        I D+  P  +    ++   + + L++ +      
Sbjct: 506 LVDELGGIDVAIAKAAKLARLTD-YAIADYPAPMGWLEQLMQQNVVDNYLDEKLKAQLGD 564

Query: 283 KVQG 286
             Q 
Sbjct: 565 FYQP 568



 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 92/266 (34%), Gaps = 26/266 (9%)

Query: 10  TRYVMLSLVTLTVVYFSW-SSHVEDNSPHVARIAIRGQIEDSQ----------------- 51
             +V     ++ ++  +      E     V  I + G + D +                 
Sbjct: 20  FIFVAFLFGSIMLLALAVDGDETEIKDNSVLAINLTGIMNDRERGSNPLEKLVGEVATPV 79

Query: 52  ---ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
                ++ IE    +D    + +   +    S    +   +A+   +     +    +  
Sbjct: 80  SLNTFLQGIEEAKTNDKVKGIYLEAGAFQADSYATLQEARKALVDFEKSGKWVIAYADTY 139

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
               Y ++ A+  +    + ++   GV  Q  ++K  L K GV ++  K    K+    F
Sbjct: 140 TQQAYYLASAATKVYLNPSGMIDWHGVASQPMFLKDALAKFGVKMQVAKVGKYKSATEMF 199

Query: 168 SE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA--EAKKVGL 223
           +E  ++    +  +  +   ++  V+ V  SR +   +    +D  I   A  + +++ L
Sbjct: 200 TEDKMSEPNREQTKAFISGIWNNVVKEVGASRKLTTAQLNQYADSAITFAAPTDYQRMKL 259

Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKI 249
           +D +   +++ + + A         +
Sbjct: 260 VDGLLYTDQIKKVVMAKMGVDDADDL 285


>gi|87306471|ref|ZP_01088618.1| endopeptidase IV; signal peptide peptidase [Blastopirellula marina
           DSM 3645]
 gi|87290650|gb|EAQ82537.1| endopeptidase IV; signal peptide peptidase [Blastopirellula marina
           DSM 3645]
          Length = 349

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 127/312 (40%), Gaps = 27/312 (8%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFS--------------WSSHVEDNSPHVARIAIRGQIED 49
           ++  +    +M + + + V   +              + S  +  +  +A I + G I +
Sbjct: 25  IIAFVGWLGLMFAGLIIIVQLAATAQYFNEEDGVSEKYYSGDKMATDKIALIRVEGLIME 84

Query: 50  SQELIE-RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
            +  I  +I+   +D +  A+++ + SPGGS  A + I+  + +++  + +   V   ++
Sbjct: 85  GEGYIRNQIDLARKDKNVKAIVLRVDSPGGSVSASDYIYHHLNELREDREIPLVVSMGSS 144

Query: 109 SAGYLISCAS------NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
           +       A       ++I A  T++ GSIGV+  +  V   L +  +   S+ S   K 
Sbjct: 145 ATSGGYYVAMAVGDEKDVIFAEPTTITGSIGVIIPHYDVSGLLAEYHIKDDSIASHERKQ 204

Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN---IPYDKTLVLSDGRIWTGAEAK 219
             S    +     +++Q +V+  +  F+ +V   R       DK   L+ G ++   +A 
Sbjct: 205 MLSMTRTMPEDQRELVQGLVNDMFERFLDVVKTGRPAYVEDPDKLKELATGEVYLTDQAI 264

Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278
           ++GL+D VG  E   +    L        ++  +  P + +   + + S ++  E  +  
Sbjct: 265 ELGLVDKVGFVEAAIERAAELAKLDAKKTRVVAYKKPVSLF--GIGSASAANPTESLMNA 322

Query: 279 MKQTKVQGLWAV 290
           +        + +
Sbjct: 323 VLNVTSPKAYYL 334


>gi|255320325|ref|ZP_05361509.1| periplasmic serine protease [Acinetobacter radioresistens SK82]
 gi|262379389|ref|ZP_06072545.1| signal peptide peptidase SppA, 36K type [Acinetobacter
           radioresistens SH164]
 gi|255302520|gb|EET81753.1| periplasmic serine protease [Acinetobacter radioresistens SK82]
 gi|262298846|gb|EEY86759.1| signal peptide peptidase SppA, 36K type [Acinetobacter
           radioresistens SH164]
          Length = 338

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 130/299 (43%), Gaps = 26/299 (8%)

Query: 6   KKIKTRYVMLSLVTLTVVY---------FSWSSHVEDNSPHVARIAIRGQI------EDS 50
           ++    +  L+   + ++           + S     ++ H+A I I G I       +S
Sbjct: 41  RRWGIFFKCLTFAYILLLLLMMGRGCTTATTSGAGSSSNAHLAVIDIIGTIDSSDRSVNS 100

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMA 107
           ++  + ++R     ++ A++++++SPGGS    + I++ I+        K V   + +M 
Sbjct: 101 EDTNKALKRAFEAKNSQAIVLNINSPGGSPVQSDEIWQEIRYYKQQYPEKKVYALIGDMG 160

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           AS  Y I+ A++ I    +SLVGSIGV+     V     KLGV  +++ S   K   S  
Sbjct: 161 ASGAYYIASAADEIWVNPSSLVGSIGVIMPNYGVMGLAQKLGVEDRTLTSGDNKDILSMT 220

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDV 226
             VNP   + +Q V+D+ +  F+  V E R          +  G  W+G +A K+G+ D 
Sbjct: 221 KPVNPAQREHVQAVLDNVHSHFIAAVKEGRGKRLKSNDPAIFSGLFWSGEQAVKLGVADR 280

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
            G    + + L        +  + D+   ++ +   L  +        +  + +Q K+Q
Sbjct: 281 TGSINSLKREL-------KLDNVLDYTVQRSPFESVLGRVGSEIGQGFSESVTQQLKIQ 332


>gi|298491184|ref|YP_003721361.1| signal peptide peptidase SppA ['Nostoc azollae' 0708]
 gi|298233102|gb|ADI64238.1| signal peptide peptidase SppA, 36K type ['Nostoc azollae' 0708]
          Length = 273

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/260 (23%), Positives = 122/260 (46%), Gaps = 5/260 (1%)

Query: 36  PHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
             +ARI I G I  +    ++E ++ +        L++ + SPGG+    + I+ A++++
Sbjct: 11  KQIARIEITGVIAGATRTRVLEALKTVEE-KKFPGLLLRIDSPGGTVGDSQEIYSALKRL 69

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
             +  ++     ++AS G  I   +  I++   ++ GSIGV+ +   ++  L+K+GVS K
Sbjct: 70  GKKTKIVASFGNISASGGVYIGMGAEHIMSNPGTITGSIGVILRGNNLERLLEKVGVSFK 129

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
            +KS P K   S   E+      ++Q ++D SY  FV+ ++E+R +  +     +DGRI+
Sbjct: 130 VIKSGPYKDILSFDRELTEAEENILQQLIDVSYQQFVQTIAEARYLAVETVKGFADGRIF 189

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLKNL-SISSL 271
           TG +A ++G++D +G +E+  +    L   D            K      L       S 
Sbjct: 190 TGEQAVELGVVDRLGTEEDARRWTAELVGLDPEKTPCYTLEERKPLLSRVLPGSRQTKSG 249

Query: 272 LEDTIPLMKQTKVQGLWAVW 291
           +   I  ++         +W
Sbjct: 250 IRAGIDWLEFEVSTSGLPLW 269


>gi|288927850|ref|ZP_06421697.1| signal peptide peptidase SppA, 67K type [Prevotella sp. oral taxon
           317 str. F0108]
 gi|288330684|gb|EFC69268.1| signal peptide peptidase SppA, 67K type [Prevotella sp. oral taxon
           317 str. F0108]
          Length = 591

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/279 (24%), Positives = 133/279 (47%), Gaps = 17/279 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIED--------------SQELIERIERISRDDSATALIVSL 73
           S   + +   +A     G+I                S+++ + +E +  DD   A+++ +
Sbjct: 294 SQDADTDDGTIAIYYAEGEIVQIAPGGMFNNSTNIVSKDICKDLEDLKNDDDIKAVVLRV 353

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           +SPGG AYA E I+  + +++ +KPV+  + + AAS GY +SC +N IVA   +L GSIG
Sbjct: 354 NSPGGDAYASEQIWHQVTELRKKKPVVVSMGDYAASGGYYMSCGANWIVAEPNTLTGSIG 413

Query: 134 VLFQYPYVKPFL-DKLGVSIKSVKSSPM-KAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           +   +P +   + +KLGV    VK++             N   + M+Q  ++  Y  F+ 
Sbjct: 414 IFGVFPDLSGLVTEKLGVKFDEVKTNANSAFGNVAARPFNTAEMAMLQGYINRGYATFLN 473

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
            VS+ R +P      ++ GR+W GA+A K+ L+D +GG ++  +    L   +    + +
Sbjct: 474 RVSQGRKMPVTNLDKIAQGRVWLGADALKIKLVDQLGGIKDAVEKAAQLAKIKD-YGVSE 532

Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
           +  P ++      ++   + L++ + L      +    +
Sbjct: 533 YPAPASWQDQLFNSVVPRNTLDEQLRLTLGAAYEPFMLI 571



 Score = 95.4 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 79/260 (30%), Gaps = 23/260 (8%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQEL 53
               ++++  +  S  +  +     V  I + G I                       ++
Sbjct: 23  FAFMIMSIIGMIASADTETKLKDNSVLTINLSGTISEMAAPDVLGFLSGNTIENNGLNDM 82

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
           +  I +   +D    + +            + +  A+   K     I    +      Y 
Sbjct: 83  LLAIRKAKNNDDIKGIYLEAGPLVAGFSTLQELRDALADFKKSGKWIVAYGDTYTQGCYY 142

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VN 171
           ++  +N I       V   G+  Q  Y+K    K GV  +  K    K+    F+E  ++
Sbjct: 143 VASVANHIFLNPQGQVDWHGLSSQPYYIKDLAAKFGVKYQVAKVGTFKSATEMFTETKMS 202

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD--GRIWTGAEAKKVGLIDVVGG 229
                 +   ++  +    + VSESR I        +D            K   +D +  
Sbjct: 203 DANRLQVSMYLNGLWANVCKAVSESRKISIPALNTYADEYQLFADAQSLVKKRFVDKLLY 262

Query: 230 QEEVWQSLYALGVDQSIRKI 249
            ++V   +  L    S + I
Sbjct: 263 ADQVKGEVKKLLGIDSDKSI 282


>gi|108757755|ref|YP_631990.1| signal peptide peptidase SppA [Myxococcus xanthus DK 1622]
 gi|108461635|gb|ABF86820.1| signal peptide peptidase SppA [Myxococcus xanthus DK 1622]
          Length = 605

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 123/266 (46%), Gaps = 15/266 (5%)

Query: 35  SPHVARIAIRGQI----------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           +P VA + + G I            S+ +++ +    RD  + A++V +SSPGG+  A E
Sbjct: 311 NPRVAVVPVSGIIIPGKGASGKMATSETVVKALRAAGRDKRSKAVVVYISSPGGTPLASE 370

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +  A+Q+V  +KPVI  +  + ASAGY+++  +  I +A  ++VGSIGV      +   
Sbjct: 371 QMLEAVQRVARKKPVIAYMDRVCASAGYMVAVGAKEIWSAPHAMVGSIGVFAGKFDMSGL 430

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           ++KLGV    +      A  S      P+    ++  V+  Y  F+ +V++ R    ++ 
Sbjct: 431 MEKLGVHKTVLVRGQNAAMLSFSRGFTPQEEATLEAEVEEMYQAFLDIVAKGRGRTKEEI 490

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN---PPKNYWFC 261
             L++GR+++G   K VGL+D V G EE  +   +L    +  + +      P +     
Sbjct: 491 HQLAEGRVYSGVRGKAVGLVDQVAGFEEACRHALSLAKVPAAERFEIMTYGAPKQRVNLL 550

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287
            L   +  +      P      + GL
Sbjct: 551 KLLMGASHAQTYALCPT--ALSLNGL 574



 Score = 73.5 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 76/193 (39%), Gaps = 2/193 (1%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           +   + L E +E +++D     +++ +      A   +A+   ++  + +   +      
Sbjct: 82  VTSVERLRESLELLAKDGRVKGILLEVEDLAVPAAKRDALVAVLRAFRAQGKRVVGWAVH 141

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
             + GY + C+++ ++      V  +G   +   +   L ++G+  + ++    K  P  
Sbjct: 142 VDNEGYALLCSADEVLLPPMGRVELVGYAAESTALGVGLSRVGIRPQFIRRGDYKTAPEL 201

Query: 167 FSEV--NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLI 224
           F+    +    + ++  +D  Y   + +V+  R    ++   L D   ++   A   GL 
Sbjct: 202 FTRPVVSDIQTRTVESFLDERYADLLDVVARGRRKTPEEVRALIDQGPFSARRAVDAGLA 261

Query: 225 DVVGGQEEVWQSL 237
           D +  +  +   L
Sbjct: 262 DALVSEANLPAYL 274


>gi|85713271|ref|ZP_01044295.1| Periplasmic serine protease, ClpP family protein [Idiomarina
           baltica OS145]
 gi|85692915|gb|EAQ30889.1| Periplasmic serine protease, ClpP family protein [Idiomarina
           baltica OS145]
          Length = 562

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 121/252 (48%), Gaps = 14/252 (5%)

Query: 31  VEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAY 81
            E     +A +  RGQI                  + +   D+   A+++ + SPGGS +
Sbjct: 267 AESKKDQIAVVVARGQIVNGTQRAGMIGGDSTAALLRKAGEDERTKAVVLRIDSPGGSGF 326

Query: 82  AGEAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           A E I + I ++K +   +   +  +AAS GY I+  ++ I AA T++ GSIGV      
Sbjct: 327 ASEIIRQEILQLKEKGIPVIASMSSVAASGGYWIAAEADEIWAAPTTITGSIGVFGLVMT 386

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           ++     +GV   SV ++ +++  +    ++    +++Q   ++ Y +F+ +V+E+RN+ 
Sbjct: 387 LEDSAAAIGVHSDSVSTTEIESLNTL-EGISDSQARILQRSTENFYQFFITMVAEARNMT 445

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK---IKDWNPPKN 257
            +    ++ GRIWTG +A + GL+D +G  ++  Q+                +D +P + 
Sbjct: 446 PEAVDDVAQGRIWTGRQALERGLVDNLGDFDDAIQAAAKRADLNDYTVNTITQDLSPQQQ 505

Query: 258 YWFCDLKNLSIS 269
           ++   +   S+S
Sbjct: 506 FFANLMGQTSLS 517



 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 73/209 (34%), Gaps = 11/209 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
            ++I+ IE+   DD   AL + LS+   S     +A+  A+   K  K  I    +    
Sbjct: 37  SDVIDAIEKAKTDDRIGALYLDLSALYPSGVNKLQAVGEALSDFKTSKKPIIAAGDYFEQ 96

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y ++  ++ +       V   G  +   Y K  LDKL V     K    KA   PF  
Sbjct: 97  YQYYLASYADKVYLNPLGSVAFDGFDYSQVYFKELLDKLKVKPHVFKVGTYKAAVEPFIR 156

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESR--------NIPYDKTLVLSDGRIWTGAEAK 219
           + ++ +A +  + + D+ +  F   V+  R            D               A 
Sbjct: 157 NSMSDEAREANEYLYDAMWENFKADVTAQRQLSDTITSGQLDDYMAAFESANGDMAQMAL 216

Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
              L+D +  + E+   L  L       K
Sbjct: 217 DTNLVDALKTRTEIRNELINLSGYDEDAK 245


>gi|114332358|ref|YP_748580.1| peptidase S49 [Nitrosomonas eutropha C91]
 gi|114309372|gb|ABI60615.1| peptidase S49 [Nitrosomonas eutropha C91]
          Length = 317

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/265 (23%), Positives = 113/265 (42%), Gaps = 11/265 (4%)

Query: 8   IKTRYVMLS-LVTLTVVYFSWSSHVEDNS--PHVARIAIRGQIE-----DSQELIERIER 59
           I  R +  S L TL      W           H A + +RG+I       ++ +   +++
Sbjct: 36  IFFRLLTFSYLFTLLFWGLGWLDTEATGGFGKHTALVDLRGEITADGLNSAENINTGLKK 95

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISC 116
              D +  A+I+ ++SPGGS     +I   I ++       P+   V ++ AS GY I+ 
Sbjct: 96  AFEDKNTAAVILRINSPGGSPVQAGSINDEIHRLRTQHPDIPLYAVVEDICASGGYYIAV 155

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
           A++ I   + S+VGSIGVL         L+KLG+  + + +   K    PFS  +P   +
Sbjct: 156 AADKIFVDKASIVGSIGVLMDGFGFTGTLEKLGIERRLLTAGENKGFLDPFSPSDPGQRE 215

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
             + ++   +  F+++V + R         +  G +WTGA + ++GL D +G  + V + 
Sbjct: 216 HAKKMLVEIHQQFIQVVQDGRGDRLKDNPEIFSGMVWTGARSIELGLADALGSMDYVARE 275

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFC 261
           +            +         F 
Sbjct: 276 VIQAERIVDYTVQEGITERFAKRFG 300


>gi|77166296|ref|YP_344821.1| peptidase S49, SppA [Nitrosococcus oceani ATCC 19707]
 gi|254435484|ref|ZP_05048991.1| peptidase, S49 (protease IV) family [Nitrosococcus oceani AFC27]
 gi|76884610|gb|ABA59291.1| Peptidase S49, SppA [Nitrosococcus oceani ATCC 19707]
 gi|207088595|gb|EDZ65867.1| peptidase, S49 (protease IV) family [Nitrosococcus oceani AFC27]
          Length = 325

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 14/241 (5%)

Query: 36  PHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
           PH A + I G I        + + + ++    ++    LI+ ++SPGGS      I   I
Sbjct: 75  PHTALVKIEGIIGSDSFANAENIKKGLKAAFENEHIAGLILHINSPGGSPVQANQINDQI 134

Query: 91  QKVKNRKPVI---TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            +++   P I     + ++ AS GY I+ A++ I A + S+VGSIG L         ++K
Sbjct: 135 HQLRKEHPNIPIHAVITDICASGGYYIAVAADQIYADKASIVGSIGALINSFGFVEAMEK 194

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
           LG+  +   +   K    PFS +     Q +Q ++D+ +  F+++V ++R         L
Sbjct: 195 LGIERRLFTAGDYKGFLDPFSPMKEFESQHIQKMLDNIHKQFIQVVKDNRGERLKNDSSL 254

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
             G +WTG +A  +GLID +G    V + +          KI D+ P         + L 
Sbjct: 255 FSGLVWTGEQAIDLGLIDGLGNSNYVAREIIG------AEKIVDYTPQPKLLDRFSRQLG 308

Query: 268 I 268
            
Sbjct: 309 A 309


>gi|24214825|ref|NP_712306.1| periplasmic serine protease [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45657659|ref|YP_001745.1| endopeptidase IV [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24195838|gb|AAN49324.1| periplasmic serine protease [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45600899|gb|AAS70382.1| signal peptide peptidase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 328

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 78/287 (27%), Positives = 135/287 (47%), Gaps = 29/287 (10%)

Query: 31  VEDNSPHVARIAIRGQIEDS----------QELI----ERIERISRDDSATALIVSLSSP 76
              N   +  I I G I D             ++    +++E    D    A+I+ ++SP
Sbjct: 43  SGQNEDKILIIPIDGVISDEGEKNFFGGQEDSILVEVKKQLELAELDPEIKAVILKINSP 102

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GGS  A + I+R I + K +K  PV++   + AAS  Y IS A+++++A  TS+ GSIGV
Sbjct: 103 GGSVTASDIIYREILQFKTKKKIPVVSLFMDTAASGAYYISMATDLLIAHPTSVTGSIGV 162

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +     VK  LDKLG+  +S++S   K   SP  E++P+  +++Q +VD  +  F  +V 
Sbjct: 163 ILSGINVKEGLDKLGIKDQSIRSGGNKTIGSPLEELSPEQRKLLQSIVDDLFEKFFDIVK 222

Query: 195 ESR-NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-----IRK 248
           + R      +   ++DGRI+T ++A + GLID +G  +   Q   AL   +        +
Sbjct: 223 KGRPGKNPSELRKVADGRIFTASQALQHGLIDKIGYFDNAVQETMALSNYKKNPGNTNPR 282

Query: 249 IKDWN----PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
           I  +        N++      L   S +   +   +Q +      +W
Sbjct: 283 IIYYTRSTNQRTNFYQVQSTELKPDSTISKILGTSRQVR---FLYLW 326


>gi|237740732|ref|ZP_04571213.1| protease IV [Fusobacterium sp. 2_1_31]
 gi|229422749|gb|EEO37796.1| protease IV [Fusobacterium sp. 2_1_31]
          Length = 294

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 111/237 (46%), Gaps = 11/237 (4%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70
                 ++      +   +A I + G+I          +   ++E++E +    +   L+
Sbjct: 10  FGEYISAYKRKKNKSKNTIAVINLEGEIDTRESREAVINYDNVVEKLETLEDIKNLKGLV 69

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + ++SPGGSA   E I++ ++K+    P+   + +  AS GY I+     + A   +L G
Sbjct: 70  LRINSPGGSALESEKIYQKLKKL--EIPIYISMGDFCASGGYYIATVGKKLFATPVTLTG 127

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+  YP     ++KL V+++             FS+++ ++ + +   ++  Y  F 
Sbjct: 128 SIGVVILYPEFSETINKLKVNMEGFSKGKGFDIFDVFSKLSEESKEKIVYSMNEVYSEFK 187

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
             V E+RNI  +    ++ GR+W G++AK+ GL+D +G   +   SL      +  +
Sbjct: 188 AHVMEARNISEEDLEKIAGGRVWLGSQAKENGLVDELGTLNDCIDSLAKDLELKDFK 244


>gi|332300301|ref|YP_004442222.1| signal peptide peptidase SppA, 67K type [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177364|gb|AEE13054.1| signal peptide peptidase SppA, 67K type [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 594

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/269 (26%), Positives = 122/269 (45%), Gaps = 16/269 (5%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERIS 61
           L  V+L+ VY +          +V  +   G+I               S  L +RI  + 
Sbjct: 289 LHFVSLSDVY-ATRGSGRKGGANVGVLFAEGEINVEVADSPFNTKKVVSDRLADRILEMG 347

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
            DD   AL+V ++SPGGS+Y  E ++ A+ K    KPV+  + + AAS GY +S  ++ I
Sbjct: 348 EDDDYDALVVRVNSPGGSSYISEQLWYAVHKASENKPVVISMGDYAASGGYYMSSGASYI 407

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
            A  +++ GSIG+    P      +K+GV    VK+       +P      +   + Q  
Sbjct: 408 FAEPSTITGSIGIFGVVPNATKLANKIGVHQDVVKTGQHADLGAPDRPWTEEERALFQQY 467

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           V+  Y  F++ VSE RN+   +   ++ GR+WTGA+A  +GL+D +GG ++      +  
Sbjct: 468 VNRGYALFLKRVSEGRNMTTTQVDSIAQGRVWTGAQALSLGLVDELGGLQDAIAYAASQA 527

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISS 270
                     +   +     +L + S  +
Sbjct: 528 GY--DTYHVTYTKREVNVLQELFSSSTQA 554



 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 99/270 (36%), Gaps = 29/270 (10%)

Query: 8   IKTRYVMLSLVTLTVVYFS--WSSHVEDNSPHVARIAIRGQIED---------------- 49
           I     ++ L++      +   ++  +     + +I +   I D                
Sbjct: 21  IFASLAVIVLISFIAALSANIANNTQQIKDGSILKIELA-HISDTYVSNPWSDLGLNKSD 79

Query: 50  -SQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103
            S++L     +E I+    DD    + ++++ PG    + EA+  A++  K     I   
Sbjct: 80  GSRDLPLSYVLEAIDEAKNDDRIKGIYLNVTDPGCGYASAEALRGALEDFKEDGKFIVSY 139

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
            +  +  GY ++  ++ +   +   +   G+     + K  LDK+GV +   K    K+ 
Sbjct: 140 SDFYSLKGYYLASVADQLYVNKEGSIAFDGLAGGAVFFKDLLDKIGVEMMVFKVGTFKSA 199

Query: 164 PSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD--GRIWTGAEAK 219
             P+  + ++      +   +   +   +  V  SRN+   +   L+D    +       
Sbjct: 200 VEPYILNSMSEANRTQITSYLGDIWGRILSEVGASRNLDSVRLQSLADSMQSVRPTDSYL 259

Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
             GLID    Q++  ++L +L        +
Sbjct: 260 ANGLIDGALYQDQALETLCSLVGVDEKDDL 289


>gi|170726647|ref|YP_001760673.1| signal peptide peptidase SppA [Shewanella woodyi ATCC 51908]
 gi|169811994|gb|ACA86578.1| signal peptide peptidase SppA, 67K type [Shewanella woodyi ATCC
           51908]
          Length = 613

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/269 (24%), Positives = 121/269 (44%), Gaps = 14/269 (5%)

Query: 34  NSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
            +  V  I  +G I            +   E + +   DD   A+++ + SPGGSA+A E
Sbjct: 323 TNDTVGIIVAKGTILNGNQPAGNIGGESTSELLRKARFDDQVKAVVLRVDSPGGSAFASE 382

Query: 85  AIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
            I + +  +K   KPV+  +   AAS GY IS +++ I A  T+L GSIG+       + 
Sbjct: 383 QIRQEVLALKTAGKPVVVSMGSYAASGGYWISASADYIYATPTTLTGSIGIFGMITTFED 442

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L  +G+    V +S      S    + P    ++Q  V+  YH F+ LV+  R++  D 
Sbjct: 443 SLSSIGIHTDGVATSEWAG-ISVAKGLTPGIKDVIQRHVERGYHDFISLVANERDMSLDD 501

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFCD 262
              ++ GR+W+G +A  +GL+D +G  ++       +        +I + +      F  
Sbjct: 502 VDSIAQGRVWSGRKALSLGLVDELGDLKQAVAKAAQMAELDDFDSEIIEQDLTPQEQFIQ 561

Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
               S S+ L +++     + ++ L + W
Sbjct: 562 EMFASASAYLPESMS--HSSVIEQLLSQW 588


>gi|325475502|gb|EGC78683.1| signal peptide peptidase SppA [Treponema denticola F0402]
          Length = 495

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 111/245 (45%), Gaps = 12/245 (4%)

Query: 34  NSPHVARIAIRGQIED-----------SQELIERIERISRDDSATALIVSLSSPGGSAYA 82
           +   +  I I G I             S ++++  +    D +  A++V ++S GG  +A
Sbjct: 207 SQNSIGVIHINGAISSTGTGRIDDSAVSYKIVDLFDIAQGDPTVKAIVVRVNSGGGEVFA 266

Query: 83  GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
            E I RAI + K    PV+  +  +AAS  Y IS +++ I A+  ++ GSIGVL   P  
Sbjct: 267 SEEIRRAIDRAKASGLPVVVSMGSVAASGAYWISSSADYIFASPYTITGSIGVLATAPSF 326

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
           K  + K       +  S  K   S   E +P+  ++ Q  V   Y  F+  V+  RN+P 
Sbjct: 327 KEAVKKYLGITSDLVYSGQKPSYSVLEEPSPEEKEVRQMEVMHIYKTFIETVARGRNLPE 386

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                L+ GR+++G +A  + L+D +G  +E  +    L        +K+   P  +   
Sbjct: 387 KTVEELAGGRVYSGEQALNLKLVDALGSLDEAVKYAAELANISGQYSVKEIKKPLPFTEA 446

Query: 262 DLKNL 266
            +K++
Sbjct: 447 LIKSI 451


>gi|282877202|ref|ZP_06286040.1| signal peptide peptidase SppA, 67K type [Prevotella buccalis ATCC
           35310]
 gi|281300694|gb|EFA93025.1| signal peptide peptidase SppA, 67K type [Prevotella buccalis ATCC
           35310]
          Length = 589

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/277 (23%), Positives = 127/277 (45%), Gaps = 17/277 (6%)

Query: 30  HVEDNSPHVARIAIRGQIED---------------SQELIERIERISRDDSATALIVSLS 74
             E     VA     G I D                 E+ + +E ++ DD   A+++ ++
Sbjct: 294 KEETEGKQVAVYYAYGSIVDNPVTGSMFGAEHMIVGSEVCKDLEALAEDDDVKAVVLRIN 353

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           S GGSAYA E ++  ++++K +KPV+  + +MAAS GY + C +N IVA  T+L GSIG+
Sbjct: 354 SGGGSAYASEQMWNQVEQLKKKKPVVVSMGDMAASGGYYMGCNANWIVAQPTTLTGSIGI 413

Query: 135 LFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
               P +   L  KLG+    VK++      S    +N + +  +   +D  Y  F + V
Sbjct: 414 FAMIPDMSQLLTQKLGIKFDEVKTNKNSTFGSSARPLNAEEIGYLARYIDRGYALFRQRV 473

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           ++ R +  ++   ++ G ++ G +A K+ L+D +GG ++  +    L         +D+ 
Sbjct: 474 ADGRKLSVNQVEAIAQGHVFVGRDALKIKLVDELGGLDKAVEKAAKLAKLDEFY-TQDYP 532

Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
              ++       +S  + L++ +        +    +
Sbjct: 533 AKASWMDQLTGAMSGGNYLDEQLRATLDEYYEPFMLL 569



 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 96/282 (34%), Gaps = 33/282 (11%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYF----------SWSSHVEDNSPHVARIAIRGQIEDS 50
           M+   K +    V L +  L VV F          S  +    +   +  + + G + + 
Sbjct: 1   MKDFFKYVGATVVGLIVFGLIVVIFGTMSIVGLISSAQATQNVSKNSILVLNLSGSLAEQ 60

Query: 51  -------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
                               +++  I++   +D    + +       +  + + I  A+ 
Sbjct: 61  GSDNVWGMLTGNELGSAGLDDILSAIKKAKNNDRIKGIYIESGIFLANYASRQEIRNALL 120

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
             K     I    +      Y ++  ++ +      ++   G+  Q  +VK  L K+G+ 
Sbjct: 121 DFKKSGKKIIAYGDNYTQGNYYLASVADKVFLNPQGMIDWHGIGAQPMFVKDLLKKVGIQ 180

Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
            + VK    K+    +   +++  + +  Q  +D  +   ++ VS+SR I  DK    +D
Sbjct: 181 YQVVKVGKYKSATEMYIADKMSDPSREQTQAYIDGIWSDVLKAVSDSRKINVDKLNQYAD 240

Query: 210 GRIW--TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
             I      +     L+D +    +V   +  +        +
Sbjct: 241 SLITFSNPKDYVDAKLVDGLLYTNQVKDEVKKMFGLDKDDPV 282


>gi|87123710|ref|ZP_01079560.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp.
           RS9917]
 gi|86168279|gb|EAQ69536.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp.
           RS9917]
          Length = 272

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/256 (25%), Positives = 130/256 (50%), Gaps = 5/256 (1%)

Query: 41  IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK- 97
           IAI G I  S  + +++ +  + + +   AL++ + SPGG+    + I  A+ +++++  
Sbjct: 19  IAIEGAIGASTRRRVLKALREVEKRE-FPALLLRIDSPGGTVGDSQEIHAALLRLRDKGC 77

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
            V+     ++AS G  +  AS +IV+   ++ GSIGV+ +   +   L+++G+  ++VKS
Sbjct: 78  RVVASFGNISASGGVYVGVASEMIVSNPGTITGSIGVILRGNNLSKLLERVGIRFETVKS 137

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
              K   SP   ++ +   ++Q ++DSSY  FV+ V++ R +  D     +DGR+++GA+
Sbjct: 138 GAYKDILSPDRALSAEERDLLQSLIDSSYEQFVQAVAQGRQLEPDVVRQFADGRVFSGAQ 197

Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
           AK++GL+D +G +E   +    L   +   +      P+      L    +   L   + 
Sbjct: 198 AKELGLVDALGDEETARRKAAELAGLEVDSQPVTLGKPRKQLMGLLPGSGLLQQLGQLLE 257

Query: 278 LMKQTKVQGLWAVWNP 293
                  Q LW ++ P
Sbjct: 258 SEVLLSHQPLW-LFRP 272


>gi|238919550|ref|YP_002933065.1| signal peptide peptidase SppA, 67K type, [Edwardsiella ictaluri
           93-146]
 gi|238869119|gb|ACR68830.1| signal peptide peptidase SppA, 67K type, putative [Edwardsiella
           ictaluri 93-146]
          Length = 617

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/270 (24%), Positives = 122/270 (45%), Gaps = 14/270 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGS 79
                 +  +A I   G I D +             +I +   D +  A+I+ ++SPGGS
Sbjct: 318 KPKRTGNGQIAVIFASGPIIDGEATPGSVGGDTTAAQIRQARLDPAIRAIILRVNSPGGS 377

Query: 80  AYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I  A+   +   KPV+  +  +AAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 378 VTASEEIRSALAAARDAGKPVVVSMGGLAASGGYWISTPANTIVASPSTLTGSIGIFGVI 437

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  L  LGV    V +SP+    +    +      +MQ  +++ Y  F+ LV+ +R+
Sbjct: 438 NTFEKPLGLLGVYTDGVATSPLADT-ALTKALPQSVSDLMQLTIENGYQRFISLVATARH 496

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
               +   ++ GR+W G +AK  GL+D +G  ++       L       +++ +    N 
Sbjct: 497 KTPAQIDNIAQGRVWLGVDAKANGLVDRLGDFDDAVSQAATLAGI-KQPQLQWY--VDNP 553

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
            F ++    ++S ++ ++P   Q  +    
Sbjct: 554 SFSEMVFSQLTSSVQASLPQALQGMIPASL 583



 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 114/331 (34%), Gaps = 50/331 (15%)

Query: 1   MEFVLKK-IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + F+ +  +    ++L L+ + +      + V   +     + + G + D+         
Sbjct: 19  LNFIREFILNLFLILLILIGVGIYLQFQDTPVNPTTKGALLVDLNGVVVDNPALNSKFGQ 78

Query: 52  -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91
                              +L++ + +   D + T L++SL++  G+     + I +A+ 
Sbjct: 79  LGRELLGIRGAALQENSLFDLVDTLRQAKSDPNITGLVLSLNNFAGADQPSLQYIGKALS 138

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           + +     I  V E    A Y ++  ++ I  +    VG  G+     Y K  LDKL VS
Sbjct: 139 EFRASGKPILAVGENYTQAQYFLASYADKIYLSPQGSVGLQGMATNNLYYKSLLDKLDVS 198

Query: 152 IKSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT----- 204
               +    K+   P    +++P+A       ++  +  ++ +V+ +R++  ++      
Sbjct: 199 THIFRVGTYKSAVEPLMRDQMSPQARSADSQWLNGMWSNYLTIVATNRHLTPEQVFPGAG 258

Query: 205 ---LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPP 255
                L          A    L+D +  + E    L       A   D     I D+   
Sbjct: 259 QMLKGLQATGGDMAQYAVLHRLVDGLASRSEAESILSRQFGWDARARDYRHISIYDYPLK 318

Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
                     +  +S      P++      G
Sbjct: 319 PKRTGNGQIAVIFASG-----PIIDGEATPG 344


>gi|119510440|ref|ZP_01629573.1| Peptidase S49, SppA [Nodularia spumigena CCY9414]
 gi|119464862|gb|EAW45766.1| Peptidase S49, SppA [Nodularia spumigena CCY9414]
          Length = 273

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/260 (25%), Positives = 127/260 (48%), Gaps = 5/260 (1%)

Query: 36  PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
             +ARI I G I  S  + ++E ++ +       AL++ + SPGG+    + I+ A++++
Sbjct: 11  KQIARIEITGAIAGSTRKRVLEALKTVEE-KKFPALLLRIDSPGGTVGDSQEIYSALKRL 69

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           + +  ++     ++AS G  I   +  I+A   ++ GSIGV+ +   ++  L+K+GVS K
Sbjct: 70  RKKIKIVASFGNISASGGVYIGMGAEHIMANPGTITGSIGVILRGNNLERLLEKVGVSFK 129

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
            +KS P K   S   ++      ++Q+++D SY  FV  ++E+R++  +     +DGRI+
Sbjct: 130 VIKSGPYKDILSFDRQLTAPEETILQELIDISYQQFVHTIAEARSLEVETVKTFADGRIF 189

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLKNL-SISSL 271
           TG +A ++G++D +G +E+       +   D            K      L     +SS 
Sbjct: 190 TGEQALELGVVDRLGTEEDARCWTAEMVGLDPDKAPCYTLEERKPLLSRVLPGSRQVSSG 249

Query: 272 LEDTIPLMKQTKVQGLWAVW 291
           L   I  ++         +W
Sbjct: 250 LGAGINWLEFEMSTSGLPLW 269


>gi|300112959|ref|YP_003759534.1| peptidase S49 [Nitrosococcus watsonii C-113]
 gi|299538896|gb|ADJ27213.1| peptidase S49 [Nitrosococcus watsonii C-113]
          Length = 325

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 112/248 (45%), Gaps = 14/248 (5%)

Query: 29  SHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           S     +PH A + I G I      +++ + + ++    ++    LI+ ++SPGGS    
Sbjct: 68  SAPGITAPHTALVNIEGIIGADSFANAENIKKGLKAAFENEHIAGLILHINSPGGSPVQA 127

Query: 84  EAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
             I   + +++ + P I     + ++ AS GY I+ A++ I A + S+VGSIG L     
Sbjct: 128 SQINDQVHQLRKKHPDIPIHAVITDICASGGYYIAVAADQIYADKASIVGSIGALINSFG 187

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               ++KLG+  +   +   K    PFS +     Q +Q ++D+    F+++V ++R   
Sbjct: 188 FVEAMEKLGIERRLFTAGDYKGFLDPFSPMKEFEAQHIQKMLDNIQKQFIQVVKDNRGDR 247

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 L  G +WTG +A  +GLID +G    V + +          KI D+ P      
Sbjct: 248 LKNDSSLFTGLVWTGEQAIDLGLIDGLGNSSYVAREIIG------AEKIIDYTPKPKLLD 301

Query: 261 CDLKNLSI 268
              + L  
Sbjct: 302 RFSRQLGA 309


>gi|68171775|ref|ZP_00545120.1| Peptidase S49, SppA [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658399|ref|YP_507221.1| signal peptide peptidase SppA [Ehrlichia chaffeensis str. Arkansas]
 gi|67998800|gb|EAM85507.1| Peptidase S49, SppA [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599856|gb|ABD45325.1| signal peptide peptidase SppA [Ehrlichia chaffeensis str. Arkansas]
          Length = 288

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 81/261 (31%), Positives = 157/261 (60%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66
           ++   +++  L+ L             ++ ++A++ I G+IE ++E+   +++I+ D+  
Sbjct: 19  RVFAFFMIFVLLMLVNYIDISKISSFLDNEYIAKVNIEGKIETNEEMDALLKKIAEDNHV 78

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
           T LI++++SPGGS    E +++ I+ V   KPV+  +++ AAS GY+ + A++ I+A  T
Sbjct: 79  TGLILNINSPGGSVTGSEILYQNIRNVSKNKPVVALLNDFAASGGYMTAIAADYIIARHT 138

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           ++ GSIGVL QY  + P  +K+G+S+KS+KSS +KAE SPF E+  +  + ++ ++ +SY
Sbjct: 139 TITGSIGVLMQYIGINPLAEKMGISLKSIKSSNLKAETSPFEELTEEKEESIRRIIKNSY 198

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
            +FV +V++ R +  D+ L +++G I+TG+EA  +GL+D +GGQ+E     ++  +    
Sbjct: 199 DYFVDIVADRRKMEKDQVLKIANGSIYTGSEALSIGLVDQIGGQDEAMNWFHSQNISTQK 258

Query: 247 RKIKDWNPPKNYWFCDLKNLS 267
            K+      K+        +S
Sbjct: 259 VKVLSKKKHKSIIENVSSFIS 279


>gi|284007469|emb|CBA72932.1| protease IV (signal peptide peptidase) [Arsenophonus nasoniae]
          Length = 626

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 72/259 (27%), Positives = 125/259 (48%), Gaps = 14/259 (5%)

Query: 37  HVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           ++A I  +G I D         S+  + +I +   +    A+++ ++SPGGS  A EAI 
Sbjct: 338 NIAVIIAQGAIIDGPQEPGMVGSETTVAQIRKARLNPDIKAIVLRVNSPGGSVTASEAIR 397

Query: 88  RAI-QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
             +       KP++  +  MAAS GY IS  +N I A+ T+L GSIG+       +  LD
Sbjct: 398 NELVAARDANKPIVVSMGGMAASGGYWISTPANYIFASPTTLTGSIGIFGVINTFEKSLD 457

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
            +GV    V ++P+    S    +N +   MMQ ++++ YH F++ V+++R+    +   
Sbjct: 458 TIGVYTDGVSTTPLAD-ISATKGINKQFSDMMQIIIENGYHTFLKYVAQARHKTPAEIDK 516

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           ++ GR+W G++A + GLID +G  ++       L          DW  P+      L  L
Sbjct: 517 IAQGRVWVGSDALQNGLIDKLGDFDDAVNKAAELAKIT--APSLDWMQPERSLIDQLI-L 573

Query: 267 SISSLLEDTIPLMKQTKVQ 285
            ++S  E  +P   Q  + 
Sbjct: 574 ELTSNAEAMMPDTLQLLLP 592



 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 101/292 (34%), Gaps = 40/292 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH--VARIAIRGQIEDSQ------- 51
           + F+ + I +   +  +      YF++ S  +  S +     I ++G I D         
Sbjct: 19  LNFIRRFITSFICLFLIFIAASSYFAYKSEKKSTSQYHGALLIDLQGVIVDQVSIPNPLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I R + DD  T +++ L +  GS     + I +A+
Sbjct: 79  KMSRELLGSSSNRMQENSLFDIVNIIRRATYDDKITGIVLQLDNLIGSDQPSLQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
            + K     I  V      + Y ++  +N I  ++   VG  G      Y K  LD L V
Sbjct: 139 TEFKQAGKPIYAVGNGYNQSQYYLASFANNIYMSQQGNVGIYGFSTNKLYYKTLLDNLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK----- 203
           +    +    K+   PF    ++ +A +  +  + S +  ++  ++++R           
Sbjct: 199 NSHIFRIGTYKSAVEPFIRDNMSAEAREADKVWIGSLWQHYLSTIAQNRQTTAGNIFPGA 258

Query: 204 ---TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
                 +      +   A K  LID +     + + L          +  ++
Sbjct: 259 DKLIEEMKSVNGDSAQYAIKQKLIDHIFTGAVMEKELSKKFGWNDKEQHFNY 310


>gi|257093133|ref|YP_003166774.1| peptidase S49 [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045657|gb|ACV34845.1| peptidase S49 [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 316

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 115/282 (40%), Gaps = 8/282 (2%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERIS 61
             K   V   +  L +V          +  H A I + G I       +Q + + ++   
Sbjct: 35  FFKLVVVSYLVAVLVMVVDWGGPEQRADGRHTAVIHLHGTIEASGEASAQNINDALQAAF 94

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCAS 118
            D     +I+ ++SPGGS      +   I+++     + P+   V ++ AS GY I+ A 
Sbjct: 95  GDKGTAGVILRVNSPGGSPVQAGIVHDEIRRLRTTHPQIPLYVVVEDLCASGGYYIAVAG 154

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I   + S+VGSIGVL         +DKLG+  + + +   K    PFS  + K  +  
Sbjct: 155 DKIFVDKASIVGSIGVLMDAFGFTGTMDKLGIERRLLTAGENKGFLDPFSPQDAKQKEHA 214

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           Q ++   +  F+ +V   R     +T  +  G +WTG+++ K+GL D  G    V + + 
Sbjct: 215 QVLLREIHKQFIEVVRRGRGPRLKETPEMFSGLMWTGSQSVKLGLADGFGTVGSVARDVI 274

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
                      ++                + SLLE   P ++
Sbjct: 275 KAERMVDFTIKENIAERFAKRLRADSTQGVGSLLEVIRPAVR 316


>gi|149920473|ref|ZP_01908941.1| SppA [Plesiocystis pacifica SIR-1]
 gi|149818654|gb|EDM78099.1| SppA [Plesiocystis pacifica SIR-1]
          Length = 683

 Score =  130 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 75/283 (26%), Positives = 131/283 (46%), Gaps = 20/283 (7%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------ELIERIERISRDDSATAL 69
           +   +       PHVA +   G I D +              +L+  ++RI+ DD+  A+
Sbjct: 360 FIGLAPPKRPTEPHVAIVYAVGNIIDGKGQGALGATSEIASGQLVPVLDRIAADDAVAAV 419

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           ++ + S GGSA A E I+ A++++K  KPV+  +  +AAS GY IS  +N IVA   ++ 
Sbjct: 420 VLRVDSGGGSALASEQIWHAVERLKANKPVVVSMAGVAASGGYYISAGANHIVAEPNTIT 479

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+     +   L + GV   +VK        SP      +    +   ++ +Y  F
Sbjct: 480 GSIGVVGGKLAMGEALSRWGVETFTVKKGARANLWSPMDTWTEEERAAIYATMEETYEVF 539

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           +  V+  R++  D    ++ GR+WTGA+AK+ GL+D +GG E        LG  +     
Sbjct: 540 LSRVAAGRSMDRDGVHAIAQGRVWTGADAKERGLVDELGGIEVALAKAAELGEVEGEPGY 599

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDT-----IPLMKQTKVQGL 287
           + + P +      L +   ++ +        +P+  Q  +  L
Sbjct: 600 EVY-PGEPTLKDLLGSFGGAAGMAQASAGTRLPMSAQLMLDEL 641



 Score = 86.2 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 99/273 (36%), Gaps = 21/273 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ-------------------ELIERIERISRDDSATA 68
           S   + + PH+  + ++G + + +                    L++ ++ ++ +D    
Sbjct: 92  SDGFDADEPHLRVLTLKGSVAEVEGVDPLAMVLGGGGSTLQTRALLDELDELAAEDEVRG 151

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           LI+ + + G      E +   + + K  +  I    E   +A Y +  A + +  A    
Sbjct: 152 LILRVGNLGMDMARAEELRAGLLEFKATERSIYCHAETLDNASYYLLSACDELSMAPVGT 211

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSY 186
           V   G +    ++K  LDKLGV    +     K    P      +P+ ++ ++ V+D ++
Sbjct: 212 VAIPGPIATPIHLKGLLDKLGVQPDFLHVGAFKGAAEPLTRDAPSPEMIETLEAVIDKAH 271

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
              V  ++  R    ++     D  ++T  +AK+ GLID V   E             + 
Sbjct: 272 GTMVEGIASGRKRSPEEVSAWIDEALYTTEKAKQAGLIDRVDVWERYLADATDAAGTDAG 331

Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
            +        +        L     L+  I L 
Sbjct: 332 LETPLGWKKASVGAEASDMLDDPMALQRFIGLA 364


>gi|260549329|ref|ZP_05823549.1| periplasmic serine protease [Acinetobacter sp. RUH2624]
 gi|260407735|gb|EEX01208.1| periplasmic serine protease [Acinetobacter sp. RUH2624]
          Length = 365

 Score =  130 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 124/298 (41%), Gaps = 27/298 (9%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP---------HVARIAIRGQI-------ED 49
           ++    +  L+ + L  +          +           H+A + I G I        +
Sbjct: 67  RRWGIFFKTLTFIYLLFIVVLMGKGCSTSKEGSAASSSSAHLAVVDIVGTIDASSNQSVN 126

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEM 106
           S++  + ++R     ++ A+ ++++SPGGS    + I++ I+ +      K V   + +M
Sbjct: 127 SEDTNKALKRAFEASNSKAIALNINSPGGSPVQSDEIWQEIRYLKKEHPDKKVYAVIGDM 186

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            AS  Y I+ A++ I+   +SLVGSIGV+     +     KLG+  +++ +   K   S 
Sbjct: 187 GASGAYYIASAADEIIVNPSSLVGSIGVIMPNYGITGLAQKLGIEDRTLTAGTNKDILSM 246

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLID 225
              +NP   + +Q V+D+ +  F+  V E R          +  G  WTG +A ++G+ D
Sbjct: 247 TKPINPVQREHIQSVLDNVHTHFINAVKEGRGKRLKSNDPAIFSGLFWTGEQAIQLGVAD 306

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
             G    + + L        +    D+   +N     L  +        +  + ++ +
Sbjct: 307 RSGNITSLMREL-------KLDNKVDYTIERNPLQSILGRMGAEMGKGLSESVAQRLE 357


>gi|157962074|ref|YP_001502108.1| signal peptide peptidase SppA [Shewanella pealeana ATCC 700345]
 gi|157847074|gb|ABV87573.1| signal peptide peptidase SppA, 67K type [Shewanella pealeana ATCC
           700345]
          Length = 613

 Score =  130 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/269 (24%), Positives = 126/269 (46%), Gaps = 16/269 (5%)

Query: 35  SPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           +  V  I  +G I                E + +   DDS  A+++ + SPGGSA+A E 
Sbjct: 324 NDQVGIIVAKGNILNGSQPAGQIGGDSTSELLRKARFDDSIKAVVLRVDSPGGSAFASEQ 383

Query: 86  IFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           I + +  +K   KPV+  +   AAS GY IS +++ I A  T+L GSIG+       +  
Sbjct: 384 IRQEVLALKAANKPVVVSMGSYAASGGYWISASADYIYATPTTLTGSIGIFGMITTFEDS 443

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L  +GV    V +S      S    ++P+   ++Q  ++  Y+ F+ LV++ R++  D+ 
Sbjct: 444 LASIGVHTDGVGTSEWAG-FSVTKGLSPQIQAVIQRHIERGYYDFISLVAKERDMSLDQV 502

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPKNYWFCD 262
             ++ GR+WTG +A ++GL+D +G  ++       +          I+    P+  +  +
Sbjct: 503 DSIAQGRVWTGRKALELGLVDGLGELQDAVTKAAEMASLDTFDTEVIERELSPQEQFIQE 562

Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
           +   + S L      + + + ++ + + W
Sbjct: 563 MFATASSHLPP---SVTQSSLLETILSQW 588



 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 93/278 (33%), Gaps = 36/278 (12%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------- 51
           L+K+    +   ++ L +V  S    VE  +     + + G I D +             
Sbjct: 22  LRKLFLNLIFFGVIALIIVSLSTDDGVEVENGAALVLNLSGTIVDQKRQVDPIEAAMKSG 81

Query: 52  ------------ELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRKP 98
                       +++  I+  + D+  + L++ L    G+     ++I  AI   K    
Sbjct: 82  NEADGSGEILLSDVLYVIDNAASDERISQLVLDLGMLRGTGISKLQSIGNAIDSFKATGK 141

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            +           Y ++  ++ +       V   G+     Y K  L+KL ++    +  
Sbjct: 142 TVVANGNWYGQNHYFLASFADKVYLNPQGSVEIEGLGRYRLYFKSALEKLKINAHVFRVG 201

Query: 159 PMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLS 208
             K+   PF   +++ +A +    +++  +  +   V+ +R I  +            L 
Sbjct: 202 TFKSAVEPFIRDDMSDEAKEANLVLLNDLWRSYADTVAANRGINSNDLSLSADDYLAQLD 261

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
                +   A  +  +D +   EE   S+       S 
Sbjct: 262 KADGKSADMAVNMKWVDGLKSAEEFRLSMVDAVGKSSD 299


>gi|75908676|ref|YP_322972.1| peptidase S49, protease IV [Anabaena variabilis ATCC 29413]
 gi|75702401|gb|ABA22077.1| Peptidase S49, protease IV [Anabaena variabilis ATCC 29413]
          Length = 609

 Score =  130 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 118/266 (44%), Gaps = 9/266 (3%)

Query: 31  VEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAY 81
             ++   +A +   G I D                  +I +D++  A+++ ++SPGGSA 
Sbjct: 310 ARNSKNKIAVVYAEGDIVDGKGDDGQIGGDRFARIFNKIRQDENVKAVVLRINSPGGSAT 369

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
           A E + R I+  +  KPV+  + + AAS GY I+  SN I A   ++ GSIGV       
Sbjct: 370 ASEVMQREIRLTRESKPVVVSMGDYAASGGYWIATDSNRIFAEPNTITGSIGVFGVLFNG 429

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
           +   +  G++  +VK++      +     +P+ + + Q  VD  Y+ FV  V++ R +P 
Sbjct: 430 QKLANDNGITWDAVKTARYADSQTVARPKSPQEIAIYQRSVDRIYNMFVNKVAQGRKLPT 489

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
            K   ++ GR+W+G  AK++GL+D +GG     +            +++++    ++   
Sbjct: 490 QKVAQIAQGRVWSGVTAKQIGLVDEIGGLNAAIEYAAKAAKLGKDWQLREYPRESSFEER 549

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287
               +         I  +       L
Sbjct: 550 FFGGVVEEISTTLGIEKLDVKPNDPL 575



 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 95/234 (40%), Gaps = 5/234 (2%)

Query: 51  QELIERIERISRDDSATALIVSLS--SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
           + +I+ +E+  RD    A+ +  S         + + I +A+++ +     +        
Sbjct: 87  RNVIDSLEKAQRDKRIVAIYLDGSRGGNNLGFASLKEIRKALEEFRKSGKKVIAYGVSWN 146

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167
              Y +S  ++ I       +   G+  Q  +V   L K G+ ++ V++   K    PF 
Sbjct: 147 EREYYLSSVADTIALNPLGGLEINGLSSQPMFVAGALQKYGIGVQVVRAGKFKGAVEPFV 206

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGAEAKKVGLID 225
            ++++P+  +  Q ++D  +  +   V  SR I   K   ++D + +    EAK  GL+D
Sbjct: 207 LNKLSPENREQTQKLLDDVWGEWRTTVGNSRKINPQKLQAIADNQSLLEPTEAKTNGLVD 266

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
            V   ++V   L  L               + Y     ++L ++   ++ I ++
Sbjct: 267 QVAYNDQVVADLKKLTGSDKKDNTFTQISLRRYAQVPGQSLGVARNSKNKIAVV 320


>gi|297618683|ref|YP_003706788.1| signal peptide peptidase SppA, 36K type [Methanococcus voltae A3]
 gi|297377660|gb|ADI35815.1| signal peptide peptidase SppA, 36K type [Methanococcus voltae A3]
          Length = 367

 Score =  130 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/281 (22%), Positives = 132/281 (46%), Gaps = 18/281 (6%)

Query: 8   IKTRYVMLSLVTLTV---VYFSWSSHVEDNSPHVARIAIRGQIE--------------DS 50
           +   ++++ ++ + +   + F      ++ S ++A I   G +               D 
Sbjct: 56  LIYLFIVVVIIAVLLSSSLLFINLLIDDEESGNIALIDFSGTLYLSTPEDDLFSEYPPDV 115

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
            + I+ ++   ++     +I+ ++SPGGS+ A   +   I++V  +KPV+  +  M ASA
Sbjct: 116 YDYIDWLDEAEKNPDIKGVIIKINSPGGSSIASTKLAEKIEEVSQKKPVVAYIEAMGASA 175

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
            Y  + ++  IVA + +LVGSIGV     +    +DK+GV+   +K    K   SP+  +
Sbjct: 176 AYGAAASTGYIVAEKEALVGSIGVRMDILHYYGLMDKIGVNSTVIKGGEYKDIGSPYRPM 235

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             +  +M+Q +V++SY  FV  ++  RN+ Y++   L+ G+++ G +A ++GL+D  G  
Sbjct: 236 TEEEQEMLQKIVNNSYVDFVSQIARDRNMTYEEANELAQGKVYDGRDALQLGLVDENGDF 295

Query: 231 EEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSISS 270
           ++    L            IK ++             S  +
Sbjct: 296 DQAINVLAKRTNLSVDDINIKTYSKEDTRPGNLFGFDSNEA 336


>gi|251792410|ref|YP_003007136.1| signal peptide peptidase SppA, 67K type [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533803|gb|ACS97049.1| signal peptide peptidase SppA, 67K type [Aggregatibacter
           aphrophilus NJ8700]
          Length = 628

 Score =  130 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 115/236 (48%), Gaps = 11/236 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSL 73
           +         D    +A + + G I D +          + + + +   D     +++ +
Sbjct: 314 LAALPDRMSGDTENKIAVVNVEGAIIDGESDEDNVGGDTIAKLLRQAYDDKKVKGVVLRV 373

Query: 74  SSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           +SPGGSA+A E I + +  ++   KPV+  +  MAAS GY IS  ++ IVA + ++ GSI
Sbjct: 374 NSPGGSAFASEVIRQELTHLQQAGKPVVVSMGGMAASGGYWISSTADYIVADKNTITGSI 433

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           G+    P  +  + K+GV+   VK+S +      FS ++     ++Q  ++  Y  F+  
Sbjct: 434 GIFAVLPTFEKTIKKIGVTADGVKTSDL-TLGLLFSPLSSPLNDVIQLEIEHGYDQFLTK 492

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           VSE R++  ++   ++ G++W G+EA +  L+D +G  +        L  ++ + K
Sbjct: 493 VSEGRHLTKEQVDRIAQGQVWLGSEALEHKLVDELGTLDTALGKAIELVNEKRLEK 548


>gi|296313748|ref|ZP_06863689.1| signal peptide peptidase SppA [Neisseria polysaccharea ATCC 43768]
 gi|296839673|gb|EFH23611.1| signal peptide peptidase SppA [Neisseria polysaccharea ATCC 43768]
          Length = 328

 Score =  130 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57
           K I      L LV L    F           N+PH A + + G+I +  ++ ++++    
Sbjct: 45  KNIWRAVSTLILVALLAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114
           E   ++  A A+++  +SPGGS       F  I+++K + P   V     +M AS  Y I
Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I A  +S+VGSIGV+         ++K+GV  +   +   K    PFS   P+ 
Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            ++ ++++   +  F++ V   R       +   +  GR++TGA+A KVGL+D +G    
Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280
           V Q +           + D+ P  ++           + + + + +  ++
Sbjct: 285 VAQDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVSEALQSLQ 328


>gi|145297988|ref|YP_001140829.1| signal peptide peptidase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142850760|gb|ABO89081.1| signal peptide peptidase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 614

 Score =  130 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 123/278 (44%), Gaps = 13/278 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSL 73
           +  +   + ++    V  I   G I D            L + +    RDD   A+++ +
Sbjct: 311 LTAAPEQYPQNGKDEVGLIVASGAIMDGVQSAGTIGGDSLSDLLADARRDDKVKAVVLRV 370

Query: 74  SSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
            SPGGSA+A E I   +  + +  KPV+  +   AAS GY IS  ++ I A+ T+L GSI
Sbjct: 371 DSPGGSAFAAEQIRAELLALKQAGKPVVISMGSYAASGGYWISADADKIFASPTTLTGSI 430

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GV   +  +   L + G+    V ++           +     Q +Q  V+ +Y  FV L
Sbjct: 431 GVFGMFATIDKALSQYGIHTDGVGTTDY-VGVGLTRALPEHVGQAIQLSVEDTYQRFVGL 489

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS--IRKIK 250
           VS+ R +   +    ++GR+WTG +AK +GL+D  G QE+  ++   L   +   +  I+
Sbjct: 490 VSKGRGLSPQEAEKAAEGRVWTGQDAKALGLVDEFGNQEDAIKAAATLANLKEWQVTPIE 549

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                ++ +   L + S  +L       +     + L 
Sbjct: 550 QEESARDKFLRQLFDSSAQALAPHLQSWLPAGFGKALV 587



 Score = 85.8 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 83/207 (40%), Gaps = 11/207 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
            +L+  I     DD   AL++      G S    + +  AI + K     +  + +    
Sbjct: 93  SDLLWAIRSAKDDDRIKALVIKPQGLQGTSLSKLQEVAGAIDEFKESGKPVIAMADYYNQ 152

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             YL++  ++ ++  ++  V   G+     Y K  L+KL V+    K    K+   P+  
Sbjct: 153 GQYLLAAHADHVLLNQSGAVLIEGLGVYQTYFKSALEKLNVTPHVFKVGTYKSFVEPYTR 212

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAK 219
            E++P++ +  Q  +D  +  +V  V+E R I  +           +L        + A 
Sbjct: 213 DEMSPESKEANQRWLDQLWQSYVADVAEQREIEPEAVAPSKDRFLELLRKAGGNAASYAL 272

Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSI 246
             GL+D +  ++E+ Q++     +   
Sbjct: 273 DNGLVDQLATRDEMTQAVIKEVGEDED 299


>gi|304314958|ref|YP_003850105.1| protease [Methanothermobacter marburgensis str. Marburg]
 gi|302588417|gb|ADL58792.1| predicted protease [Methanothermobacter marburgensis str. Marburg]
          Length = 287

 Score =  130 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/275 (24%), Positives = 135/275 (49%), Gaps = 17/275 (6%)

Query: 14  MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI----------EDSQELIERIERISRD 63
           ++ +++++ +  S S  + +    VA I + G I              ++   IE  + D
Sbjct: 11  LIVVLSISGLVMSISGFIGEAEGTVAIIPVHGAIAYDSAGFSDAVSPDDIKNLIEEANSD 70

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
            S  A+++ ++SPGG+  A E +  AI+K  + KPV++ + +   S  YL + AS+ IVA
Sbjct: 71  PSVKAIVLDINSPGGTPVASEELMDAIKK--SEKPVVSWISDSGTSGAYLAASASDRIVA 128

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
           + ++ VGSIGV+     +     ++G++  ++K+   K   + +  +  +  QM+Q +V+
Sbjct: 129 SPSAWVGSIGVILDLTDLSEMYRQMGINKYAIKAGEYKDMGADYRMITDEERQMLQSMVN 188

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
             Y +F+R V+ +RN+       L++GRI+TG +A K  L+D  GG++        L   
Sbjct: 189 EEYDYFIRTVAANRNLSVSYVRGLAEGRIFTGRQALKNRLVDYTGGRDYAVDVAAKLAGL 248

Query: 244 QSIRKIKDWNPPK-----NYWFCDLKNLSISSLLE 273
           ++   +    P       +  F  L +   ++  E
Sbjct: 249 KNYDTVTLEPPGGFVKILSSMFSKLGSAGSANTTE 283


>gi|325133299|gb|EGC55965.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis M13399]
          Length = 328

 Score =  130 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 131/290 (45%), Gaps = 21/290 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57
           K I      L LV L    F           N+PH A + + G+I +  ++ ++++    
Sbjct: 45  KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114
           E   ++  A A+++  +SPGGS       F  I+++K + P   V     +M AS  Y I
Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I A  +S+VGSIGV+         ++K+GV  +   +   K    PFS   P+ 
Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            ++ ++++   +  F++ V   R       +   +  GR++TGA+A+KVGL+D +G    
Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADAQKVGLVDGLGNIYS 284

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280
           V + +           + D+ P  ++           + + + + +  ++
Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328


>gi|284053896|ref|ZP_06384106.1| signal peptide peptidase A [Arthrospira platensis str. Paraca]
 gi|291565705|dbj|BAI87977.1| protease IV [Arthrospira platensis NIES-39]
          Length = 273

 Score =  130 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/260 (26%), Positives = 133/260 (51%), Gaps = 5/260 (1%)

Query: 36  PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
             +ARI I G I     + ++E ++ +       AL++ + SPGG+    + I+ A++ +
Sbjct: 11  KQIARIEISGAIAGDTRKRVLEALKTVEE-RKFPALLLRIDSPGGTVGDSQEIYSALKSL 69

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           + +  ++     ++AS G  I   +  I+A   ++ GSIGV+ +   ++  L+K+GVS K
Sbjct: 70  RKKVKIVASFGNISASGGVYIGMGAEHIMANPGTITGSIGVILRGNNLERLLEKVGVSFK 129

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
            +KS P K   +   E+     Q++Q+++D+SY  FV  V+ESRN+  +     +DGRI+
Sbjct: 130 VIKSGPYKDILAFDRELTEPEQQILQELIDTSYQQFVSTVAESRNLEIEAVRSFADGRIF 189

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLK-NLSISSL 271
           TG +A ++G+ID +G +E+  +    +   D    +      PK+     L  NL+ ++ 
Sbjct: 190 TGEQALQLGVIDRLGSEEDARRWTAEMVNLDPDKTECCTLEKPKSLLNRVLSNNLAATNS 249

Query: 272 LEDTIPLMKQTKVQGLWAVW 291
           + D    ++         +W
Sbjct: 250 ISDARNWVEFELGTSGLPLW 269


>gi|16125179|ref|NP_419743.1| signal peptide peptidase SppA [Caulobacter crescentus CB15]
 gi|221233913|ref|YP_002516349.1| signal peptide peptidase [Caulobacter crescentus NA1000]
 gi|13422197|gb|AAK22911.1| signal peptide peptidase SppA [Caulobacter crescentus CB15]
 gi|220963085|gb|ACL94441.1| signal peptide peptidase [Caulobacter crescentus NA1000]
          Length = 594

 Score =  130 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 115/288 (39%), Gaps = 18/288 (6%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQI----------------EDSQELIERIERI 60
           L+               + P +A I   G I                  S ++ +     
Sbjct: 277 LLDFDDYASRSKPTAVKSGPAIAVIGAEGAIITGTDASASPFGGDSNVYSDDVAQAFRAA 336

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASN 119
           + D    A++  +SSPGGS  A E I  A+Q  K   KPV+  +   AAS GY IS  ++
Sbjct: 337 TEDKDVKAIVFRVSSPGGSDTASEQILAALQAAKKAGKPVVVSMGTYAASGGYWISSQAD 396

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-PMKAEPSPFSEVNPKAVQMM 178
            I+A  ++L GSIGV      +   L + GV  K +                 P+     
Sbjct: 397 SIIAQPSTLTGSIGVYGGKFAIGEALARFGVDTKDLHVGADYSQAFGAGEGFTPEQRAKF 456

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
              +D  Y  F+  V+E RN+P  K   ++ GR+WTG +AK++GL+D +GG  E  +   
Sbjct: 457 AGWMDRIYAGFITRVAEGRNLPPAKVREIAKGRVWTGEQAKQLGLVDELGGYYEAVEKAK 516

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           AL   +   +IK      + +    K L +S     T+          
Sbjct: 517 ALAKVKGDIRIKHMQGGASPFEAFEKFLGVSETSAKTMAAAAWVLGDP 564



 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 9/234 (3%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAAS 109
            +IE + R  +DD   A++V L   G +  A + +  A +  +   +KP+      +  S
Sbjct: 74  SVIETLRRAEKDDKVKAILVRLPEGGVAPAAADELRLAFKHFREVGKKPIYAHSQGLYPS 133

Query: 110 AG----YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
                 Y++  A++       S   ++G+  +  + K F DK GV  +  +    K   +
Sbjct: 134 GMVTSTYMLGAATSEFWMQPDSSFQAVGISSESMFFKRFFDKYGVKAEYEQRYEYKNAVN 193

Query: 166 P--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
           P   S+  P   +     + S Y   +   +  R     K +   +G  +   EA+  GL
Sbjct: 194 PYLHSDYTPAHRESTLSWMGSVYRTALTSAAVDRKQDPTKLMKTLEGGPYIAQEAQAKGL 253

Query: 224 IDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
           ID VG   ++             +    D+                    E  I
Sbjct: 254 IDKVGQVSDIQAFALEKAGKGAKLLDFDDYASRSKPTAVKSGPAIAVIGAEGAI 307


>gi|153801836|ref|ZP_01956422.1| protease IV [Vibrio cholerae MZO-3]
 gi|124122608|gb|EAY41351.1| protease IV [Vibrio cholerae MZO-3]
          Length = 556

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 106/239 (44%), Gaps = 11/239 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           +       +       ++  +A +   G I D            +   +     D +  A
Sbjct: 307 IGYYEYKTTIKPTTLTDANDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ + SPGGSA+A E I   I+ +K   KPV+  +  +AAS GY IS +++ IVA  T+
Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKTAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIG+       +  L  LG+    V ++P  +     + +   A   +Q  ++  Y 
Sbjct: 427 LTGSIGIFSVITTFEKGLSNLGIYTDGVGTTPF-SGQGLTTGLTQGAKDAIQLGIEHGYQ 485

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
            F+ LV+E R +       L+ GR+WT  +A+ +GL+D +G  ++       L      
Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQY 544



 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 99/284 (34%), Gaps = 37/284 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51
           + F+   +     +LS+  +  +Y    + +       A  + + G I +          
Sbjct: 19  ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPIDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            +++E +     D++ T L+++    P  +      I +AI + 
Sbjct: 79  FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ I  A    V   G      Y K  L+KL V+  
Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-------- 203
             +    K+   PF   +++  A +     +   +  +V  V+ +R I            
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEQF 258

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
              L +      A +KKVGL+D +  +++V Q+L          
Sbjct: 259 VAQLKEVNGDLAALSKKVGLVDELATRQQVRQTLAETFGSDGKD 302


>gi|313127075|ref|YP_004037345.1| signal peptide peptidase a [Halogeometricum borinquense DSM 11551]
 gi|312293440|gb|ADQ67900.1| signal peptide peptidase A [Halogeometricum borinquense DSM 11551]
          Length = 330

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 72/279 (25%), Positives = 128/279 (45%), Gaps = 20/279 (7%)

Query: 2   EFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-------------- 47
           E V   +    V+ +++  TV+    +S    +   VA IA+ G I              
Sbjct: 30  EDVTSLLGILLVVATVLGGTVIGGRIASSRYSDYD-VAEIAVEGPISRDGGSGRLPTRPG 88

Query: 48  -EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
              S +++E+I+  + D +   L+V L++PGG+    + I RA+ +     P I    + 
Sbjct: 89  GASSDDVVEQIQTAADDGAVDGLLVRLNTPGGAVLPSDDIRRAVAEF--DGPTIAYATDT 146

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            AS GY I+   + I A + S+VGSIGV+     V    D+LGVS +   +   K   + 
Sbjct: 147 CASGGYWIASGCDEIWAHDVSIVGSIGVIGSSVNVHELADRLGVSYERFAAGKYKDAGTA 206

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
             E +    + +Q +VD  Y  FV  V+E R +  D     ++ R++ G+ A ++GL+D 
Sbjct: 207 LKEPSADEREYLQGLVDDYYDDFVERVAEGREMDPDAIRD-TEARVYLGSRAHELGLVDE 265

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
           +G +++V   L A   D     ++++ P +N        
Sbjct: 266 LGTRDDVLDRLAARL-DVESVSVREFTPSENLVSRLRGG 303


>gi|138896331|ref|YP_001126784.1| Signal peptide peptidase [Geobacillus thermodenitrificans NG80-2]
 gi|134267844|gb|ABO68039.1| Signal peptide peptidase [Geobacillus thermodenitrificans NG80-2]
          Length = 341

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 67/280 (23%), Positives = 127/280 (45%), Gaps = 18/280 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSS 75
              D    +  + + G IED+              Q  ++ I+++  DDS  A+++ ++S
Sbjct: 60  EDGDPLKKIVVLEVNGVIEDTGEAETFFSSSFYNHQAFLKMIKQVKEDDSVKAIVLRINS 119

Query: 76  PGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           PGG       +   + K+K     P+   +  MAAS GY I+ A + + A+  ++ GSIG
Sbjct: 120 PGGGVVESAEVHNQLLKLKKETKKPIYVSMGAMAASGGYYIATAGDKLFASPETITGSIG 179

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V+ Q    +    K GV + ++KS P K   +P  ++     +++Q +++ SY  FV ++
Sbjct: 180 VIMQSINYEGLAKKYGVELVTIKSGPYKDIMNPARKMTDAEQEILQRLINQSYEGFVDVI 239

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW- 252
            E R +  +    L+DGRI+ G +AK + LID  G  ++   +L         + +K   
Sbjct: 240 VEGRKLSEEAVRKLADGRIYNGRQAKALQLIDEFGYLDDTIAALKKEHRLSGAQVVKYVS 299

Query: 253 -NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
             P  + +     N    +   + I L+ +     L  ++
Sbjct: 300 DTPWSSLFGVISNNAKPETEASELIRLLSRPSSPRLMYLF 339


>gi|319943489|ref|ZP_08017771.1| signal peptide peptidase SppA [Lautropia mirabilis ATCC 51599]
 gi|319743304|gb|EFV95709.1| signal peptide peptidase SppA [Lautropia mirabilis ATCC 51599]
          Length = 329

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 112/274 (40%), Gaps = 11/274 (4%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------SQELIE 55
           + + +    V+   +                + +VA I I G I          +  + +
Sbjct: 39  IFQWLAFLAVLAFGIQRCTSVAQVDEDQRRPASYVASINIEGVIVGGSGEEGASADRINK 98

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAGY 112
            + R   D  A  +++ ++SPGGS      I   +   +++   KP+   + E+ AS GY
Sbjct: 99  ALRRAFSDPRAVGVVLRINSPGGSPVQSGMIVDEMRRQRRLHPEKPLHAVIEEVGASGGY 158

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            I+ A++ I   + S+VGSIGVL  Y  V+  L  LG+  ++  +   KA   P + ++ 
Sbjct: 159 YIAAAADNIYVDKASIVGSIGVLLSYYGVQDTLKMLGIERRTQTAGKNKAFLDPTAPMSA 218

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
           +     Q ++D  +  F+ +V + R     +T     G  WTG  + ++GL D +G  + 
Sbjct: 219 EQKAHAQAMLDEVHRQFIDVVKQGRGQRLKETPETFSGLFWTGERSIQLGLADGLGSVDS 278

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           V + +          +   W      +  +    
Sbjct: 279 VARDVLNTENVVDFSEYSRWQMLARQFGAEAFGG 312


>gi|254673921|emb|CBA09705.1| signal peptide peptidase SppA, 36K type [Neisseria meningitidis
           alpha275]
          Length = 328

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57
           K I      L LV L    F           N+PH A + + G+I +  ++ ++++    
Sbjct: 45  KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114
           E   ++  A A+++  +SPGGS       F  I+++K + P   V     +M AS  Y I
Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I A  +S+VGSIGV+         ++K+GV  +   +   K    PFS   P+ 
Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            ++ ++++   +  F++ V   R       +   +  GR++TGA+A KVGL+D +G    
Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280
           V + +           + D+ P  ++           + + + + +  ++
Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328


>gi|257887182|ref|ZP_05666835.1| protease/peptidase [Enterococcus faecium 1,141,733]
 gi|257823236|gb|EEV50168.1| protease/peptidase [Enterococcus faecium 1,141,733]
          Length = 341

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 66/276 (23%), Positives = 130/276 (47%), Gaps = 21/276 (7%)

Query: 30  HVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSP 76
              D++  + ++ + G I                +  +E+++ +  D +   + + ++SP
Sbjct: 53  EEGDSTQKIVKLTVDGTIAAGGSSGLFASEGYNHENFMEQLKAVEEDPTVKGIFLEVNSP 112

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG  Y    I + +  ++     P+   +  MAAS GY IS  ++ I A E ++ GSIGV
Sbjct: 113 GGGVYESAEIAKKLDTIRKEHDIPMYVSMKNMAASGGYYISAQADKIFATEETVTGSIGV 172

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +         L+KLGV   +VKS  +K   S       +   ++Q  +DS+Y  FVR+VS
Sbjct: 173 IMSGLNYSGLLEKLGVEDTTVKSGALKDMGSGTRPETKEEEAVLQAYIDSAYQRFVRIVS 232

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           E RN   +    ++DGRI+ G +AK+VGL+D +G  E+  Q++      +   ++ +++ 
Sbjct: 233 EGRNKSEEAVKKIADGRIYDGVQAKEVGLVDELGFPEDALQAMRKEQKLEDA-ELVEYSS 291

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
           P + +        ++         +K ++   + ++
Sbjct: 292 PSSGFASTWLGSKLA-----EFQGLKSSETSQILSI 322


>gi|90420561|ref|ZP_01228468.1| putative peptidase, S49 family [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335289|gb|EAS49042.1| putative peptidase, S49 family [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 325

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 92/278 (33%), Positives = 153/278 (55%), Gaps = 11/278 (3%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
            +  +  +   +AR++I G I   Q+L++ ++R+  +D+  A+++ + SPGG+   GE+I
Sbjct: 40  SADRMATSKDQIARVSIEGMILKDQKLLDLLDRLKDEDAVKAVVLRIDSPGGTTVGGESI 99

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
           + A++ +   KPV  EV  +AASAGY+I+  ++ IVA  TS+VGSIGV+FQY      LD
Sbjct: 100 YEAVRAIAEVKPVAAEVGTLAASAGYMIASGADHIVARRTSIVGSIGVIFQYVDASQLLD 159

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
            +GV I ++KS+P+KAEPSPF+     A +M+  +V  +Y WFV LV+E R++   +   
Sbjct: 160 TVGVQINAIKSAPLKAEPSPFAPAPEAAKEMINRLVMDTYEWFVALVAERRDMSMAEAKA 219

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           L+DG I++G +  K  L+D +GG+ EV +             I D  P  + +   +   
Sbjct: 220 LADGSIFSGQQGLKNRLVDALGGENEVRRWFEEDRGIARDLVIVDREPKDDGFDFSMFAG 279

Query: 267 SIS-----------SLLEDTIPLMKQTKVQGLWAVWNP 293
           + +           S       L K   + GL ++W P
Sbjct: 280 ARAAIYGVFGLDPRSGSLTAAVLRKAGHLDGLVSLWQP 317


>gi|56417009|ref|YP_154083.1| protease IV [Anaplasma marginale str. St. Maries]
 gi|222475377|ref|YP_002563794.1| protease IV (sppA) [Anaplasma marginale str. Florida]
 gi|56388241|gb|AAV86828.1| protease IV [Anaplasma marginale str. St. Maries]
 gi|222419515|gb|ACM49538.1| protease IV (sppA) [Anaplasma marginale str. Florida]
          Length = 293

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 81/236 (34%), Positives = 137/236 (58%)

Query: 36  PHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95
            +VAR+ I G+I  S+     + R++  DS  AL++ + SPGG+    EA+++ I+++  
Sbjct: 52  DYVARVRISGEIGRSRAREAMLARLAESDSVKALVLRIDSPGGTVGDSEALYQQIREIAL 111

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
           +KPV+  +  +AAS GY+ + A++ +VA   ++ GSIGV+ QY  V     KLG+++KS+
Sbjct: 112 KKPVVAVLGNVAASGGYMAAIAADHVVARHGTITGSIGVVSQYIGVAEAAGKLGIALKSI 171

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215
           K++P+K+  SP  E++P+   ++Q VVD  + +FV LV+E R    DK   +SDGRI+TG
Sbjct: 172 KTAPLKSNMSPLEELSPEGESIIQGVVDDFHVFFVGLVAERRGFTPDKVSAVSDGRIYTG 231

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           A+A + GLID +GG++E  + L                   +       + +I  L
Sbjct: 232 AQALQAGLIDAIGGEKEALEWLKTQRDVDVRVVKDVDYQRIDSGLPAFFSSAIQYL 287


>gi|90020544|ref|YP_526371.1| translation elongation factor G [Saccharophagus degradans 2-40]
 gi|89950144|gb|ABD80159.1| signal peptide peptidase SppA, 67K type [Saccharophagus degradans
           2-40]
          Length = 610

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 122/245 (49%), Gaps = 11/245 (4%)

Query: 36  PHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
            ++  I   G I D            + + +    +D+S  AL++ + S GGSA+A E I
Sbjct: 313 DNIGLIVASGTIYDGRHPEGTIGGDSMADLLREAQKDNSLKALVIRVDSGGGSAFASEVI 372

Query: 87  FRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
            + I  +K +   I   +  +AAS GY I+ A++ I A   +L GSIGV   YP +   L
Sbjct: 373 RQEISNLKAKGIPIYISMGSLAASGGYWIATAADEIWATPATLTGSIGVWGLYPNLTDSL 432

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           D LG+    + ++ +         ++  A +++Q  VD+ Y  F+ +V+++R I  ++  
Sbjct: 433 DALGIHTDGIGTTELADVFRTDRPLSNAAEKVLQSGVDNIYSRFLSIVADARGISVEQVN 492

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            ++ GR+W+G  AK++GL+D +GG  +V ++           ++K    P +     L+ 
Sbjct: 493 EIAQGRVWSGTTAKELGLVDELGGLNDVIKAAAERQQLSD-YRVKLIAQPLSAKEQFLRA 551

Query: 266 LSISS 270
           L+ ++
Sbjct: 552 LTQNA 556



 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 72/208 (34%), Gaps = 11/208 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
            +LI  I+R   D   +AL+++L+   G        +  AI + K     +    +  + 
Sbjct: 82  SDLITAIDRAKTDSRISALVLNLNHLTGGGVSKLTEVGDAILRFKEGGKEVVAFGDNLSQ 141

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y ++  ++ I   +   V   G      Y     DKL +     +    K    PF  
Sbjct: 142 QQYYLATYADHIYLNDLGAVFVTGYGIYRNYWAEAADKLKLKFHVFRVGDYKDAIEPFVR 201

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-----WTGAE---AK 219
           + ++  + +     ++  +  +   V   R +P                 ++G     A+
Sbjct: 202 NSMSDASREHNGRWLNELWGLYTSQVEAQRELPVGAVNEYITSLPKALPNYSGTAAEFAR 261

Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIR 247
             GL+D V  + ++ +   A   +   +
Sbjct: 262 DAGLVDDVVSRVKLREIFIAKYGEGKEK 289


>gi|294789451|ref|ZP_06754688.1| signal peptide peptidase SppA, 36K type [Simonsiella muelleri ATCC
           29453]
 gi|294482664|gb|EFG30354.1| signal peptide peptidase SppA, 36K type [Simonsiella muelleri ATCC
           29453]
          Length = 335

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 78/306 (25%), Positives = 136/306 (44%), Gaps = 35/306 (11%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDN--------SPHVARIAIRGQIEDSQEL---- 53
           +  +  +  + ++    +  S      +N          H A I + G I  ++++    
Sbjct: 45  RLWRNIWRGVGVLMFVSIMASAMKGSPENRQHQIATHKEHTAVINLTGVIGGNEDVNHVE 104

Query: 54  --IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN---RKPVITEVHEMAA 108
              + +E   ++  A A+I+  +SPGGS       F+ + ++KN    KPV   + +M A
Sbjct: 105 ILRDGLEEAFKNKHAKAIIIHANSPGGSPVVSNVAFQEVMRLKNMEKTKPVYVVIGDMCA 164

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
           S  Y I+ A++ I A  +SLVGSIGV+         +DKLGV  +   +   K    PFS
Sbjct: 165 SGCYYIASAADKIYADPSSLVGSIGVIGSSFDATGLMDKLGVKRRQRIAGNNKGMGDPFS 224

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLIDV 226
              P+ V + Q +++  +  F++ V   R     +     L  GR++TG E+K VGLID 
Sbjct: 225 PETPEQVAIWQQMLNQIHAEFIKAVKLGRGNKLKEQQNPDLFSGRVYTGLESKNVGLIDE 284

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
            G    V + +          K+ D+ P +N          ++SL+   +     TK++ 
Sbjct: 285 FGNVYSVARDVVK------APKLVDYTPEQN---------DLASLISRGLGAKMNTKLES 329

Query: 287 -LWAVW 291
            L +VW
Sbjct: 330 WLNSVW 335


>gi|254995186|ref|ZP_05277376.1| protease IV (sppA) [Anaplasma marginale str. Mississippi]
 gi|255003361|ref|ZP_05278325.1| protease IV (sppA) [Anaplasma marginale str. Puerto Rico]
 gi|255004484|ref|ZP_05279285.1| protease IV (sppA) [Anaplasma marginale str. Virginia]
          Length = 291

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 81/236 (34%), Positives = 137/236 (58%)

Query: 36  PHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95
            +VAR+ I G+I  S+     + R++  DS  AL++ + SPGG+    EA+++ I+++  
Sbjct: 50  DYVARVRISGEIGRSRAREAMLARLAESDSVKALVLRIDSPGGTVGDSEALYQQIREIAL 109

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
           +KPV+  +  +AAS GY+ + A++ +VA   ++ GSIGV+ QY  V     KLG+++KS+
Sbjct: 110 KKPVVAVLGNVAASGGYMAAIAADHVVARHGTITGSIGVVSQYIGVAEAAGKLGIALKSI 169

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215
           K++P+K+  SP  E++P+   ++Q VVD  + +FV LV+E R    DK   +SDGRI+TG
Sbjct: 170 KTAPLKSNMSPLEELSPEGESIIQGVVDDFHVFFVGLVAERRGFTPDKVSAVSDGRIYTG 229

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           A+A + GLID +GG++E  + L                   +       + +I  L
Sbjct: 230 AQALQAGLIDAIGGEKEALEWLKTQRDVDVRVVKDVDYQRIDSGLPAFFSSAIQYL 285


>gi|308390209|gb|ADO32529.1| putative protease [Neisseria meningitidis alpha710]
          Length = 328

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57
           K I      L LV L    F           N+PH A + + G+I +  ++ ++++    
Sbjct: 45  KNIWRAVSTLILVALIAGIFRKDEAALQLTGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114
           E   ++  A A+++  +SPGGS       F  I+++K + P   V     +M AS  Y I
Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I A  +S+VGSIGV+         ++K+GV  +   +   K    PFS   P+ 
Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            ++ ++++   +  F++ V   R       +   +  GR++TGA+A KVGL+D +G    
Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGSRLKFQQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280
           V Q +           + D+ P  ++           + + + + +  ++
Sbjct: 285 VAQDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328


>gi|163311059|pdb|3BEZ|A Chain A, Crystal Structure Of Escherichia Coli Signal Peptide
           Peptidase (Sppa), Semet Crystals
 gi|163311060|pdb|3BEZ|B Chain B, Crystal Structure Of Escherichia Coli Signal Peptide
           Peptidase (Sppa), Semet Crystals
 gi|163311061|pdb|3BEZ|C Chain C, Crystal Structure Of Escherichia Coli Signal Peptide
           Peptidase (Sppa), Semet Crystals
 gi|163311062|pdb|3BEZ|D Chain D, Crystal Structure Of Escherichia Coli Signal Peptide
           Peptidase (Sppa), Semet Crystals
          Length = 593

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 69/271 (25%), Positives = 117/271 (43%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 294 KTPADTGDSIGVVFANGAIXDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 353

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+      AAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 354 VTASEVIRAELAAARAAGKPVVVSXGGXAASGGYWISTPANYIVANPSTLTGSIGIFGVI 413

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A    Q  +++ Y  F+ LV+++R+
Sbjct: 414 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQLXXQLSIENGYKRFITLVADARH 472

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++       L        ++ +     +
Sbjct: 473 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 531

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +     N S S  +   +P   Q  +    A
Sbjct: 532 FDKVXDNXSGS--VRAXLPDAFQAXLPAPLA 560



 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 81/208 (38%), Gaps = 11/208 (5%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASA 110
           +++  I +   D + T ++  L +  G      + I +A+++ ++    +  V E  +  
Sbjct: 74  DIVNTIRQAKDDRNITGIVXDLKNFAGGDQPSXQYIGKALKEFRDSGKPVYAVGENYSQG 133

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168
            Y ++  +N I  +   +V   G      Y K  LDKL VS    +    K+   PF   
Sbjct: 134 QYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRD 193

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKK 220
           + +P A +     +   +  ++  V+ +R IP ++           L+     T   A +
Sbjct: 194 DXSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALE 253

Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRK 248
             L+D +    E+ ++L          K
Sbjct: 254 NKLVDALASSAEIEKALTKEFGWSKTDK 281


>gi|116072773|ref|ZP_01470039.1| Peptidase S49, SppA [Synechococcus sp. BL107]
 gi|116064660|gb|EAU70420.1| Peptidase S49, SppA [Synechococcus sp. BL107]
          Length = 270

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 127/259 (49%), Gaps = 6/259 (2%)

Query: 39  ARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           ARI + G I  +  Q +++ +  + R +   AL++ + SPGG+    + I  A+ +++  
Sbjct: 14  ARIVVEGPINGATRQRVLKALLEVKRRE-FPALLLRIDSPGGTVGDSQEIHAALLRLREN 72

Query: 97  K-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
              V+     ++AS G  I   +  IV+   ++ GSIGV+ +   +    +++G+   +V
Sbjct: 73  GCRVVASFGNISASGGVYIGVGAEKIVSNPGTITGSIGVILRGNDLSRVFERIGIRFDTV 132

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215
           KS   K   SP   +NP+   ++QD++DSSY  FV +V++ RN+  +     +DGR+++G
Sbjct: 133 KSGKFKDILSPDRALNPEERALLQDLIDSSYSQFVGVVAKGRNLTEETVKTFADGRVFSG 192

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSISSLLED 274
            +A  +GL+D +G ++   +    L        +      P+      L    I S L+ 
Sbjct: 193 EQALSLGLVDELGDEDHALRLAAQLADLDQDDIRPVTLGRPRRKVSNLLPGSQIVSQLQK 252

Query: 275 TIPLMKQTKVQGLWAVWNP 293
            + +      Q LW ++ P
Sbjct: 253 WLTMELMGSGQVLW-LYRP 270


>gi|218767314|ref|YP_002341826.1| putative protease [Neisseria meningitidis Z2491]
 gi|121051322|emb|CAM07607.1| putative protease [Neisseria meningitidis Z2491]
 gi|319409577|emb|CBY89869.1| putative peptidase [Neisseria meningitidis WUE 2594]
 gi|325129241|gb|EGC52080.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis OX99.30304]
          Length = 328

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57
           K I      L LV L    F           N+PH A + + G+I +  ++ ++++    
Sbjct: 45  KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114
           E   ++  A A+++  +SPGGS       F  I+++K + P   V     +M AS  Y I
Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I A  +S+VGSIGV+         ++K+GV  +   +   K    PFS   P+ 
Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            ++ ++++   +  F++ V   R       +   +  GR++TGA+A KVGL+D +G    
Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280
           V + +           + D+ P  ++           + + + + +  ++
Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328


>gi|325959637|ref|YP_004291103.1| signal peptide peptidase SppA, 36K type [Methanobacterium sp.
           AL-21]
 gi|325331069|gb|ADZ10131.1| signal peptide peptidase SppA, 36K type [Methanobacterium sp.
           AL-21]
          Length = 312

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 66/280 (23%), Positives = 141/280 (50%), Gaps = 15/280 (5%)

Query: 11  RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI------EDSQELI------ERIE 58
             + L + T++++  S   +   N   VA I ++G+I         + ++      + + 
Sbjct: 18  LVIALLVATVSLLGGSNFLNSAPNGDTVAVIPLQGEIGYGSSGVSGETIVTPENVKDALN 77

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118
           +   D + +++++ ++SPGGS  A E I  AI +  ++KPV+  + +  AS  YL + ++
Sbjct: 78  QAESDGTVSSILIKINSPGGSPVASEEIMNAINE--SKKPVVVWIGDTGASGAYLAASSA 135

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I+A+ +S+VGSIGV+     +  + +  G++  S+K+   K   S +  +      M+
Sbjct: 136 DDIIASPSSMVGSIGVIMGLTDLSKYYENNGINKYSIKAGEYKDMGSDYRNLTTNETNML 195

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           Q +V+  Y  F+ +V+ +RN+  + T  +++G+I+TG +AK + L++  GG+++   +  
Sbjct: 196 QGMVNEDYAHFIDIVAVNRNLTVNYTQSIAEGKIYTGTQAKNLKLVNDTGGEKQALDAAA 255

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278
            LG         D NP  +     L ++S        + +
Sbjct: 256 KLGGITGSYNTIDINP-SSGLLDILNSMSSRIAYSIGLGI 294


>gi|153004053|ref|YP_001378378.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027626|gb|ABS25394.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter sp.
           Fw109-5]
          Length = 831

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 3/246 (1%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            I  ++ +  ++ R + D +  A+++ + SPGG   A + I+R +Q+ + RKPVI  + +
Sbjct: 565 AIAGAETISAQLRRAADDSAVKAIVLRVDSPGGDGVASDRIWREVQRARRRKPVIASMGD 624

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           +AAS GYL +  ++ I+A  ++L GSIGV    P +   L KLGV   +          S
Sbjct: 625 LAASGGYLAAVGADEILAEPSTLTGSIGVFALKPDLSGLLSKLGVGRDATARGENAQLTS 684

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
                       ++  +D  Y  FV  V+E R +       ++ GR+WTG +A++  L+D
Sbjct: 685 VAKPWAGPERAAVEREIDRFYAHFVARVAEGRKLDPAVVETVAAGRVWTGRQAQERHLVD 744

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK-V 284
            +G  E+  Q        +    +                 +   L     PL++    V
Sbjct: 745 RLGSLEDALQLARERAGLRPRDVV--LVRTAKGGEDGQDPFTAGILGARGDPLVRALGAV 802

Query: 285 QGLWAV 290
             L A+
Sbjct: 803 PELRAL 808



 Score = 72.3 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 89/192 (46%), Gaps = 3/192 (1%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           L+ R+     D    A+ V +   G  A   E +  A+ +++ RKPV+  +     +  Y
Sbjct: 326 LLRRLGEARDDPEVAAIAVRIEGLGLGAGRAEELRGALARIRERKPVLAYLAG-GGTTEY 384

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FSEV 170
            I+ A+  + A   S +   G+     +VK  L +LGV+ + VK    K  P P   S+ 
Sbjct: 385 WIASAATALAAQPGSTLFVNGLSTSTLFVKDTLARLGVAFEVVKRGAYKTAPEPLVRSDA 444

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
           +P+A ++   V+D  Y   V  V+ +R +P ++   L D  ++   +A++ GL+D V   
Sbjct: 445 SPEAREVTASVLDDLYARIVADVAAARRLPEERVRALVDRGLFGAEDAQREGLLDAVLWP 504

Query: 231 EEVWQSLYALGV 242
           +E+      +  
Sbjct: 505 DELEGWARRVTG 516


>gi|90410825|ref|ZP_01218840.1| putative protease IV [Photobacterium profundum 3TCK]
 gi|90328456|gb|EAS44754.1| putative protease IV [Photobacterium profundum 3TCK]
          Length = 617

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 124/271 (45%), Gaps = 18/271 (6%)

Query: 34  NSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           +   +A +   G I D                +     DD   A+I+ + SPGGSA+A E
Sbjct: 322 SDNQIAVVVASGAIIDGTQRQGTVGGDSTAALLRDARLDDDIKAVILRVDSPGGSAFASE 381

Query: 85  AIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
            I   +  + +  KPV+  +  +AAS GY IS +++ I+A  T++ GSIG+       + 
Sbjct: 382 IIRNEVDALKQAGKPVVVSMSSVAASGGYWISASADRIIAQPTTITGSIGIFAILTTFEK 441

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L+K+GV    V ++P  +      E+     Q+ Q  V+  Y  F+ LVS+ RN+  ++
Sbjct: 442 GLEKMGVYSDGVGTTPF-SGVGVTRELPEGVGQVFQLGVEHGYKRFIGLVSQYRNMSLEQ 500

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN------ 257
              ++ GR+WTG +A ++GL+D +G  ++   +   L       ++     P +      
Sbjct: 501 ADKIAQGRVWTGQDAMELGLVDQLGDFDDAVAAAVELAKL-ETYELNWMEEPLSTAEKFL 559

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
             F    +  +++++   +P   Q   Q + 
Sbjct: 560 QQFSSEVSTKVATMVLGQLPSALQPVTQQVV 590



 Score = 95.4 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 109/327 (33%), Gaps = 39/327 (11%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + F  + I   + ++ +  + V +       E        + + G I + +         
Sbjct: 19  ISFTRQLILNLFFLIIIGAIFVAFNYGEDTPEQPDKAALILDLSGPIVEQRRYINPIDSI 78

Query: 52  ----------------ELIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVK 94
                           ++ E I + S D+    L+++L      S      I +AI + K
Sbjct: 79  ASNALGQPPAQENILFDITETIRKASTDNKIEGLVLNLKGMSETSLTKLRYIAKAIAEFK 138

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
                +    +    + Y ++  ++ +  +    V   G      Y K  L+KL V+   
Sbjct: 139 AAGKPVYAYGDNFGQSQYYLASYADKVFMSPDGGVMLTGYGSYSLYYKSLLEKLNVNTHV 198

Query: 155 VKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP--------YDKT 204
            +    K+   P+   +++  A +     ++  +  F   V+ +R+I          D  
Sbjct: 199 FRVGTYKSFVEPYTRDDMSAPAREANTVWLNQLWGAFTTDVANNRHIDAATLTPNIDDFV 258

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI---RKIKDWNPPKNYWFC 261
             L          + K+GL+D +  + ++   +             +I  +         
Sbjct: 259 QELKAVDGDFAKLSLKMGLVDELISRPQLRNKMIEEFGSDGEHSFNQISYYEYQPTIINT 318

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           DL + +  +++  +  ++  T+ QG  
Sbjct: 319 DLPSDNQIAVVVASGAIIDGTQRQGTV 345


>gi|257126290|ref|YP_003164404.1| signal peptide peptidase SppA, 36K type [Leptotrichia buccalis
           C-1013-b]
 gi|257050229|gb|ACV39413.1| signal peptide peptidase SppA, 36K type [Leptotrichia buccalis
           C-1013-b]
          Length = 549

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 61/281 (21%), Positives = 124/281 (44%), Gaps = 11/281 (3%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQI--------EDSQELIERIERISRDDSATAL 69
           V++           E     +A I + G I             + E++E +    +   L
Sbjct: 265 VSIEDYIVMTKDKKEKAKDTIAVINLEGVIDMKNPNKNITYDNVCEKLEELKEIKNLKGL 324

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           ++ ++SPGGSA   E I++ ++K+    P+   + ++ AS GY I+     + A   +L 
Sbjct: 325 VLRINSPGGSALVSEKIYKKLKKLT--VPIYVSMGDLCASGGYYIATTGKKLFANNFTLT 382

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+  YP V   + KL V+++           +PF E+   + + +   ++  Y  F
Sbjct: 383 GSIGVVMMYPEVVGTMKKLDVNLEGFGKGAGFDMLNPFEELGEDSKEKLIHNMNEVYGEF 442

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR-K 248
              V  +R +  ++   ++ GR+W G+EAK + L+D +G  E+  +++         + +
Sbjct: 443 KEHVMVARGMNDEELEKIAQGRVWLGSEAKNINLVDEIGTLEDCIKAMANDLKLDKYKVQ 502

Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           I +          D+K   +S  + + +  ++    Q L+ 
Sbjct: 503 IVELTQTLKETLSDIKMPFVSEEIREKVEFLQGNINQVLYY 543



 Score = 73.1 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 107/281 (38%), Gaps = 25/281 (8%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWS-------------------SHVEDNSPHVARI 41
           M F+LK +    +ML L  +  + F                        V+     VA  
Sbjct: 1   MMFILKMLLEIVIMLILCVILSLIFVKKILRVKNKKKLPLKKVKTVVFDVKKLKEDVAMP 60

Query: 42  AIRG-QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI 100
           A++G +     ++++ +  ++ D +   +I+ +     +    E I +   K+K  K V+
Sbjct: 61  ALKGKEKLSYYQILQGLNNLAEDKNIKKVIIDVDKLNLTLSQLEEISKIFDKIKKNKEVV 120

Query: 101 TEVHEMAASAGYLISCASNIIVA-AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
                   S       A+ I +     S +   G L +  Y+K FL+K G+ +  +    
Sbjct: 121 AIGTLFEESRYRQAMLANKIFMFDTRQSTLIFRGYLHKEFYLKSFLEKFGIRMNVLHIGD 180

Query: 160 MKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
            K   E    ++++ +  + ++++ D  +  FV LV   R    +   +LS   I+ G  
Sbjct: 181 YKVAGEKFSHNQMSEEKKESIKNIKDKVFEDFVELVKSKRGTDIEN-EILSGNLIFAGKK 239

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           +A +  LID V   +E+  +     V      +   +  + 
Sbjct: 240 KALEYKLIDGVADYDEIGINYKEDTVSIEDYIVMTKDKKEK 280


>gi|194324040|ref|ZP_03057815.1| peptidase [Francisella tularensis subsp. novicida FTE]
 gi|194321937|gb|EDX19420.1| peptidase [Francisella tularensis subsp. novicida FTE]
 gi|328676188|gb|AEB27058.1| Signal peptide peptidase SppA, 36K type [Francisella cf. novicida
           Fx1]
          Length = 270

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 118/262 (45%), Gaps = 16/262 (6%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVS 72
           + L ++  S  S  ++  PH+A I + G I D      + + + ++    + S   +IV 
Sbjct: 1   MILLLIVPSLFSSSKELVPHIALIKVNGVIADDAEANAERINQSLDDAYANKSVKGVIVE 60

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           ++SPGGS    + I+  +Q ++++    P+     ++ AS GY I+  +  I A + ++ 
Sbjct: 61  INSPGGSPVQSDEIYSHMQYLQHKYPTIPMYAVCTDVCASGGYYIAAGAKDIYANKMTIT 120

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+         +DKLG+  ++  S   K    PFS   P+     + ++D ++  F
Sbjct: 121 GSIGVIGSGFGFTGLMDKLGIERRTYTSGENKDFLDPFSPQKPEQTAQFKKLLDQTHQVF 180

Query: 190 VRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           +  V +SR              G  ++G +A+++GLID     +++    +      +  
Sbjct: 181 IAAVEKSRGDRLKDKNIDTTFSGEPFSGIQAQQMGLIDGFASVDQIRNEKF------NNI 234

Query: 248 KIKDWNPPKNYWFCDLKNLSIS 269
            I D+  P ++       L  S
Sbjct: 235 DIVDYTRPLDFLTAVSHKLGNS 256


>gi|15677940|ref|NP_275112.1| putative protease [Neisseria meningitidis MC58]
 gi|7227382|gb|AAF42435.1| putative protease [Neisseria meningitidis MC58]
 gi|261393443|emb|CAX51088.1| putative peptidase [Neisseria meningitidis 8013]
 gi|316984012|gb|EFV62991.1| peptidase family S49 family protein [Neisseria meningitidis H44/76]
 gi|325127273|gb|EGC50210.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis N1568]
 gi|325139441|gb|EGC61981.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis CU385]
 gi|325201167|gb|ADY96622.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis H44/76]
          Length = 328

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57
           K I      L LV L    F           N+PH A + + G+I +  ++ ++++    
Sbjct: 45  KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114
           E   ++  A A+++  +SPGGS       F  I+++K + P   V     +M AS  Y I
Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I A  +S+VGSIGV+         ++K+GV  +   +   K    PFS   P+ 
Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            ++ ++++   +  F++ V   R       +   +  GR++TGA+A KVGL+D +G    
Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280
           V + +           + D+ P  ++           + + + + +  ++
Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328


>gi|292490641|ref|YP_003526080.1| signal peptide peptidase SppA, 36K type [Nitrosococcus halophilus
           Nc4]
 gi|291579236|gb|ADE13693.1| signal peptide peptidase SppA, 36K type [Nitrosococcus halophilus
           Nc4]
          Length = 325

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 120/275 (43%), Gaps = 18/275 (6%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV----EDNSPHVARIAIRGQI-----EDSQELIER 56
           ++    + +L    L V    +  +        +PH A + + G I       ++ + + 
Sbjct: 41  RRWNIFFKILFAGYLLVFLLLYLPNGLSAPGITTPHTALVEVDGLISADSFASAENIKKG 100

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYL 113
           ++     + +  +I+ ++SPGGS      I   I +++   P I     + ++ AS GY 
Sbjct: 101 LQTAFESEHSRGVILHINSPGGSPVQTGRINDEIHRLRQEHPNIPLYAVISDVCASGGYY 160

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           I+ A++ I A + S+VGSIG L         ++KLGV  +   +   K    PFS +   
Sbjct: 161 IAVAADQIYADKASIVGSIGALINGFGFVDAMEKLGVERRLFAAGDYKGFLDPFSPIKES 220

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
             Q +Q ++++ +  F+++V + R     +   L  G +WTG +A  +GLID +G  + V
Sbjct: 221 EAQHIQKMLENIHKQFIQIVKDGRGERLKEDPSLFSGLVWTGEQALTLGLIDGLGSSDYV 280

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
            + +          KI ++ P   +       +  
Sbjct: 281 AREIVG------AEKIVNYTPKPGFLERFSAQIGA 309


>gi|254804075|ref|YP_003082296.1| putative ClpP class peptidase [Neisseria meningitidis alpha14]
 gi|254667617|emb|CBA03394.1| putative ClpP class peptidase [Neisseria meningitidis alpha14]
          Length = 328

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 131/290 (45%), Gaps = 21/290 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57
           K I      L LV L    F           N+PH A + + G+I +  ++ ++++    
Sbjct: 45  KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114
           E   ++  A A+I+  +SPGGS       F  I+++K + P   V     +M AS  Y I
Sbjct: 105 EAAYKNPQAKAIIIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I A  +S+VGSIGV+         ++K+GV  +   +   K    PFS   P+ 
Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            ++ ++++   +  F++ V   R       +   +  GR++TGA+A+KVGL+D +G    
Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADAQKVGLVDGLGNIYS 284

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280
           V + +           + D+ P  ++           + + + + +  ++
Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328


>gi|318040377|ref|ZP_07972333.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp.
           CB0101]
          Length = 270

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 131/260 (50%), Gaps = 5/260 (1%)

Query: 33  DNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            +   +ARIAI G I     + +++ +  + + +   AL++ + SPGG+    + I  AI
Sbjct: 8   KSRRKLARIAIEGAIASGTRERVLKALREVEQRE-FPALLLRIDSPGGTVGDSQEIHAAI 66

Query: 91  QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           Q+++ +   V+     ++AS G  +  A+  IVA   S+ GSIGV+ +   +   L+++G
Sbjct: 67  QRLRQKGCRVVASFGNISASGGVYVGVAAEKIVANAGSITGSIGVILRGNNLSRLLERIG 126

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           V  ++VKS   K   SP   +     Q++Q+++DSSY  FV  V+E R++        +D
Sbjct: 127 VQFETVKSGLYKDILSPDRALTAGERQLLQELIDSSYGQFVTAVAEGRDLEEGTVRSFAD 186

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSI 268
           GR+++GA+A  +GL+D +G +E   +    L        +  ++  PK      +   ++
Sbjct: 187 GRVFSGAQALVLGLVDQLGDEESARRLACELAELDVEKTRPINFGQPKKGLAGMIPGRNL 246

Query: 269 SSLLEDTIPLMKQTKVQGLW 288
            + L + + L      Q LW
Sbjct: 247 FARLSEALHLELAWSGQPLW 266


>gi|110638854|ref|YP_679063.1| protease IV; signal peptide peptidase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110281535|gb|ABG59721.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 583

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 70/259 (27%), Positives = 115/259 (44%), Gaps = 10/259 (3%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSAT 67
            V+   +          + PH+A +   G+I           S+     + R+  D +  
Sbjct: 282 FVSYKKIIKGKPEKTTSSEPHIAVLFANGEIQSGKGDNETIGSETFCTDLRRLREDKNVK 341

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           A+++ ++SPGGSA A + I+R I   +  KPVI  +  +AAS GY I+ A + IVA+  +
Sbjct: 342 AIVLRVNSPGGSALASDLIWREIMLAREVKPVIASMGNVAASGGYYIAMACDTIVASPAT 401

Query: 128 LVGSIGVLFQYPYVKPFLDK-LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           + GSIGV       +  L+  LG+S    K+       S    V      ++Q+ V++ Y
Sbjct: 402 ITGSIGVFGLLMNTEDLLNNKLGISTDREKTGLYSDLGSLTRPVTDAERMIIQNEVNAIY 461

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
             F+R  +E R+   +   V + GR+W G +AK+  LIDV GG  +              
Sbjct: 462 ATFIRKAAEGRHTSVETIEVHASGRVWAGKDAKENNLIDVFGGMNDAVMLAAKAANMGEK 521

Query: 247 RKIKDWNPPKNYWFCDLKN 265
             +  +   KN     L N
Sbjct: 522 YALVYYPEQKNQALIALMN 540



 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 98/266 (36%), Gaps = 27/266 (10%)

Query: 18  VTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDSQ---------------------EL 53
           + + V  FS              V R+ +  +I + +                     EL
Sbjct: 22  ILIIVALFSSGKEDVSAAVKENSVLRLTLDNEIIERESDKLFDGLLDPRGAASKIGLLEL 81

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
            E I+  + +D    +++ +          + +   +   K     I    EM   AGY 
Sbjct: 82  REAIQEAAVNDKIKGIVIEIKFANTGIATWKELRDELTAFKKSGKFIIAYGEMYTEAGYY 141

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FSEVN 171
           ++  ++ I   E+ ++   G+     Y K  L K+GV  +  +    K+   P     ++
Sbjct: 142 LASVADEIYLPESGMLEFNGIGVNMLYFKNLLSKIGVKTEVFRVGKYKSAIEPLVNDHMS 201

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQ 230
            +  + +   ++S Y   +  ++ SRNIP      +SD   +    +AKK GL+  V   
Sbjct: 202 DEDREQVHLYINSLYSVMLNDIASSRNIPLASLKNISDSMLVRNAHDAKKYGLVTNVAYY 261

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPK 256
           +E+  SL      +  ++I   +  K
Sbjct: 262 DEMLSSLKKKLTVEPDQEIDFVSYKK 287


>gi|325955083|ref|YP_004238743.1| signal peptide peptidase SppA, 67K type [Weeksella virosa DSM
           16922]
 gi|323437701|gb|ADX68165.1| signal peptide peptidase SppA, 67K type [Weeksella virosa DSM
           16922]
          Length = 591

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 125/268 (46%), Gaps = 11/268 (4%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQEL--------IERIERISRDDSATALIVSLSSPGGSAY 81
               N   +  +   G I++             E I  ++ DD   A+++ ++SPGGSA 
Sbjct: 303 DSNSNKNKIGILYASGAIKEGDGFDGIQSKTYTEAIREMAEDDKIKAVVLRINSPGGSAN 362

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
           A E I   +  ++ +KPV+    ++AAS GY I+ +S  I A  +++ GSIGVL   P V
Sbjct: 363 ASEQILYELDLLRKKKPVVVSFGDVAASGGYYIAQSSERIFANPSTITGSIGVLGMIPNV 422

Query: 142 KPFLDKLGVSIKSVKSSPMKAE-PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           K   + +G++    K++    +  S  + ++  A + M+  ++  YH FV  +S++R + 
Sbjct: 423 KKLANSVGITTDIAKTNANADQLKSLTNPLSADAERTMRKNIELIYHQFVSHISKNRKMT 482

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
           ++    +  G +W+G  AK++GLID  G  ++       L    +     +  P +   F
Sbjct: 483 FEAVDKVGGGHVWSGTRAKELGLIDEFGNLQDAVNYAAKLVKLDTYST--EAFPKRKDAF 540

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288
            +       + ++  +     T+ Q L+
Sbjct: 541 EEFMASITGNNIDAKLAQELGTEGQALY 568



 Score = 93.9 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 98/291 (33%), Gaps = 42/291 (14%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN------SPHVARIAIRGQIEDSQ------ 51
           V   I    +  S++ L ++ F + S +            V  I +   I +S+      
Sbjct: 8   VFSTIVGNLLTFSIILLVLIGFIFFSTLTSTPTKPIKDGSVLEITLDSPIMESEMDRIPM 67

Query: 52  ----------------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95
                           +++  I+    D+    + + +    G     + I +A++  K 
Sbjct: 68  NIFHLSKKSNNSFYLEDILRAIKNAETDNRIRGISLKIEHFQGGFTQADDIRKALEDFKK 127

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
               I       +   Y I   ++ I      +    G+  +  + K F DK G+  + +
Sbjct: 128 SGKFIYAFTNNTSQTSYYIQTVADKIYQNPLGITMLQGLGAEVMFFKNFGDKYGIDFQVI 187

Query: 156 KSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRI 212
           +    K+   P+  ++++P+  + + + ++  +      +++ R +        +     
Sbjct: 188 RHGAYKSAVEPYLRNDLSPENREQITEYMNDIWTNISTKMAKDRKLSLIDFNTKVDSLYA 247

Query: 213 WTGAEAKKVGLIDVVGG-----------QEEVWQSLYALGVDQSIRKIKDW 252
           +   ++K+  LID +              ++    L     ++    + ++
Sbjct: 248 FIPEKSKENKLIDELMQESQYDLMILKKLDDSATDLSKKAKNKHFVSLDNY 298


>gi|108758821|ref|YP_630700.1| signal peptide peptidase SppA, 36K type [Myxococcus xanthus DK
           1622]
 gi|108462701|gb|ABF87886.1| signal peptide peptidase SppA, 36K type [Myxococcus xanthus DK
           1622]
          Length = 832

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 113/270 (41%), Gaps = 17/270 (6%)

Query: 38  VARIAIRGQI---------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
           +A + + G I                 ++ +I  +E+   D S  A++V + S GG   A
Sbjct: 537 IAVVPVLGDIIGGRSREDPLGFSRLAGAETVIRALEQAQSDPSVAAIVVRVDSGGGEVLA 596

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
              ++ A+ +    KPV+  + +MAAS GY  +  ++ + A  T+L GSIGV +  P V+
Sbjct: 597 SHLMYEAVMEAAKHKPVVASMGDMAASGGYYAAIGAHEVFALPTTLTGSIGVFYIKPAVE 656

Query: 143 PFLDKLGVSI-KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
             L  L     +S+  +P+      +    P+  +  Q   D+SY  F+  V+  R +  
Sbjct: 657 GLLSGLLGVHQESLTRAPLADILDVWRPWTPEEQEAAQAWADASYDSFITEVALRRRMDK 716

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP-PKNYWF 260
            K   ++ GR+W+G +A   GL+D +GG  E   S           ++          +F
Sbjct: 717 AKVDEVARGRVWSGQDALARGLVDKLGGLLEAVDSARMRAGIPPDEELDLVVMGEARGFF 776

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
             L            +P  +    + L A+
Sbjct: 777 SALGGEPGVRAALSLLPAQEPALPESLRAL 806



 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 81/191 (42%), Gaps = 3/191 (1%)

Query: 53  LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
           L   ++  ++DD    ++V + S  G S    E + +A+ +++     +  V       G
Sbjct: 321 LTRWLDLATQDDRLAGVVVKMESLPGVSWGKAEELRQALLRLRASGKRVMAVVLSTDDLG 380

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK--AEPSPFSE 169
           Y ++ A++ I A + S++   G+          ++KLGV     +    K   E    +E
Sbjct: 381 YFVASAADRIYALQESILYINGLAVHLQTYGGTMEKLGVHWDVARVGRFKTAPEQLSRTE 440

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
            +  +++     +D+    + + V E R +P ++   L    +     A ++GL+D +  
Sbjct: 441 PSDASLESTNAYLDTEVAVYEKAVQEGRKVPVERLHALWALGLPHPKRAVELGLMDGIIS 500

Query: 230 QEEVWQSLYAL 240
             E+ + +  L
Sbjct: 501 STELDKKVAEL 511


>gi|161870990|ref|YP_001600170.1| protease IV [Neisseria meningitidis 053442]
 gi|161596543|gb|ABX74203.1| protease IV [Neisseria meningitidis 053442]
          Length = 303

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57
           K I      L LV L    F           N+PH A + + G+I +  ++ ++++    
Sbjct: 20  KNIWRAVSTLILVALIAGIFQKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 79

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLI 114
           E   ++  A A+++  +SPGGS       F  I+++K + P I       +M AS  Y I
Sbjct: 80  EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPDIPVYLVAEDMCASGCYYI 139

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I A  +S+VGSIGV+         ++K+GV  +   +   K    PFS   P+ 
Sbjct: 140 AAAADKIYADSSSIVGSIGVIGSSFDATELMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 199

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            ++ ++++   +  F++ V   R       +   +  GR++TGA+A KVGL+D +G    
Sbjct: 200 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 259

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280
           V + +           + D+ P  ++           + + + + +  ++
Sbjct: 260 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 303


>gi|261400468|ref|ZP_05986593.1| signal peptide peptidase SppA [Neisseria lactamica ATCC 23970]
 gi|269209727|gb|EEZ76182.1| signal peptide peptidase SppA [Neisseria lactamica ATCC 23970]
          Length = 328

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 124/283 (43%), Gaps = 13/283 (4%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57
           K I      L LV L    F           N+PH A + + G+I +  ++ ++++    
Sbjct: 45  KNIWRAVSTLILVALIAGIFQKDESALQLTGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114
           E   ++  A A+++  +SPGGS       F  I+++K + P   V     +M AS  Y I
Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I A  +S+VGSIGV+         ++K+GV  +   +   K    PFS   P+ 
Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            ++ ++++   +  F++ V   R       +   +  GR++TGA+A+KVGL+D +G    
Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADAQKVGLVDGLGNIYS 284

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
           V + +          +  D+               +   L+  
Sbjct: 285 VARDVVKAPDLVDYTRQDDFGTLLGRRLGAELKAGVREALQAV 327


>gi|78212133|ref|YP_380912.1| signal peptide peptidase A [Synechococcus sp. CC9605]
 gi|78196592|gb|ABB34357.1| signal peptide peptidase SppA, 36K type [Synechococcus sp. CC9605]
          Length = 273

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 124/257 (48%), Gaps = 6/257 (2%)

Query: 41  IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK- 97
           I + G I  +  + ++  +  + + +   AL++ + SPGG+    + I  A+ +++ +  
Sbjct: 19  IVVDGPITGATRKRVLNALREVKQRE-FPALLLRIDSPGGTVGDSQEIHAALLRLREQGC 77

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
            V+     ++AS G  I  A+  IVA   ++ GSIGV+ +   +    +K+G+   +VKS
Sbjct: 78  RVVASFGNISASGGVYIGVAAEKIVANPGTITGSIGVILRGNDLSRVFEKIGIRFDTVKS 137

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
            P K   SP   ++     ++Q+++DSSY  FV +V++ RN+  +     +DGR+++G +
Sbjct: 138 GPFKDILSPDRPLSDAERALLQELIDSSYGQFVGVVAQGRNLELETVKRFADGRVFSGEQ 197

Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
           A+ +GL+D +G ++   +    L        +       +      L    +   L+  +
Sbjct: 198 AQALGLVDELGDEDHARRLAAQLADLDTDDIRPVTLGKQRRKLSGLLPGSQLLHQLQQRL 257

Query: 277 PLMKQTKVQGLWAVWNP 293
            +      Q LW ++ P
Sbjct: 258 SIELMGSGQVLW-LYRP 273


>gi|304388757|ref|ZP_07370815.1| probable protease [Neisseria meningitidis ATCC 13091]
 gi|304337321|gb|EFM03497.1| probable protease [Neisseria meningitidis ATCC 13091]
          Length = 328

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57
           K I      L LV L    F           N+PH A + + G+I +  ++ ++++    
Sbjct: 45  KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLI 114
           E   ++  A A+I+  +SPGGS       F  I+++K + P I       +M AS  Y I
Sbjct: 105 EAAYKNPQAKAIIIRANSPGGSPVVSNTAFEEIRRLKAQHPDIPVYLVAEDMCASGCYYI 164

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I A  +S+VGSIGV+         ++K+GV  +   +   K    PFS   P+ 
Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            ++ ++++   +  F++ V   R       +   +  GR++TGA+A KVGL+D +G    
Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGDRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280
           V + +           + D+ P  ++           + + + + +  ++
Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328


>gi|290475449|ref|YP_003468337.1| protease IV, a signal peptide peptidase [Xenorhabdus bovienii
           SS-2004]
 gi|289174770|emb|CBJ81571.1| protease IV, a signal peptide peptidase [Xenorhabdus bovienii
           SS-2004]
          Length = 636

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 72/285 (25%), Positives = 137/285 (48%), Gaps = 28/285 (9%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGS 79
            + + ++ ++A I   G I D ++         + E++     + +  A+++ ++SPGGS
Sbjct: 323 KNSDQSNSNIAVIIAEGAIMDGRQSEGIAGGDTIAEQLREARLNPNIKAIVLRVNSPGGS 382

Query: 80  AYAGEAIFRAIQKVK---------------NRKPVITEVHEMAASAGYLISCASNIIVAA 124
             A E I   +  ++               N+KP++  +  +AAS GY IS  +N I+A 
Sbjct: 383 ISASELIRSELVAIREGTTVKNKEGHTVKENQKPIVVSMGGLAASGGYWISTPANYIIAD 442

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
           + +L GSIGV       +  L+ LGV+   + + P+         +NP    +MQ  ++S
Sbjct: 443 KNTLTGSIGVFGVLNTYEKGLNYLGVNTDGISTYPLADISVT-KGINPMFSDVMQLSIES 501

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            YH F+ LV++SR    ++   ++ GR+W+G++AKK GL+D +G  ++       L   +
Sbjct: 502 GYHKFIELVAQSRQKTQNEIKEIAQGRVWSGSDAKKNGLVDQLGDFDDAVNKAAQLAGIK 561

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           ++    +W  P+   F +   L  SS  +  +P   Q+ +    A
Sbjct: 562 TVS--LNWMQPE-LSFSEKLMLEFSSSAQALLPNTLQSMLPAPIA 603



 Score = 89.7 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/329 (13%), Positives = 104/329 (31%), Gaps = 40/329 (12%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH--VARIAIRGQIEDSQ------- 51
           + F  + I     +L ++ +      +    +    +     + + G + D         
Sbjct: 19  LNFARQLISNLIFILLVIVVATGVLVYQQQSKSVDDYRGALYVDLSGIVVDQVSARSPLD 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               ++++ I R   D   T +++ L +  G+     + I +AI
Sbjct: 79  QFGRDLIGVSSSSSQETSLFDIVDSIRRAKHDAKITGMVLKLDNFLGADQPSMQYIGKAI 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
            + K     +  + +  +   Y ++  +N +  +    V   G    + Y K  LD L V
Sbjct: 139 NEFKAAGKTVIAISDSYSQPQYYLASYANKVYLSPHGAVSLHGFSTNHLYYKSLLDSLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   P     ++ +A Q     ++  ++ +   ++ +R IP  +     
Sbjct: 199 STHIFRVGTYKSAVEPMTRDNMSEEARQADSLWLNELWNNYRNTIAVNRKIPAVRVLPEP 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                        +   A K  L+D +  +  +   L          K  ++    +Y  
Sbjct: 259 TQFIEEFRQAGGDSALYAAKNKLVDEIKPRNVIETELSNKFGWDEKNKHFNYISLYDYIA 318

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                 S  S     + + +   + G  +
Sbjct: 319 QQPIKNSDQSNSNIAVIIAEGAIMDGRQS 347


>gi|260592220|ref|ZP_05857678.1| signal peptide peptidase SppA, 67K type [Prevotella veroralis
           F0319]
 gi|260535854|gb|EEX18471.1| signal peptide peptidase SppA, 67K type [Prevotella veroralis
           F0319]
          Length = 612

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 128/285 (44%), Gaps = 16/285 (5%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRD 63
           V++  +        +++   +A     G I D                 + + +E+++ D
Sbjct: 306 VSIDDMQGVEDEGNDNSDNQIAVYYAYGDIVDGAAGGLFAQGHTIDAQVVCKDLEKLTND 365

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
               A+++ ++S GGSAYA E I+  I ++K  KPV+  +  MAAS  Y IS  SN IVA
Sbjct: 366 KDVKAVVLRVNSGGGSAYASEQIWHQIMELKKLKPVVVSMGGMAASGAYYISAPSNWIVA 425

Query: 124 AETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
             T+L GSIG+   +P     L +KLG+    VK++      +     + + +  +   +
Sbjct: 426 EPTTLTGSIGIFGMFPDFSGLLTEKLGIKFDEVKTNKFSGFGTQSRPFSEEEMAYLNQYI 485

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           +  Y  F   V+E R    ++   ++ G +++G +A K+GL+D +GG +        L  
Sbjct: 486 NRGYKLFRHRVAEGRKKTDNQIEKIAQGHVYSGQDAMKIGLVDQLGGLDVAITKAAQLAK 545

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
             +   I  +   K+ +   ++  + ++ L++ +        +  
Sbjct: 546 LSN-HSITSYPAQKSMFEQIIQESTPNNYLDEQLRSNLGDLYEPF 589



 Score = 93.9 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 97/283 (34%), Gaps = 34/283 (12%)

Query: 1   MEFVLKKIKTRYVM----------LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-- 48
           M+   K +   +V            + +T+  +  S  +  E     V  + + GQ+   
Sbjct: 21  MKQFFKYVFASFVGTLLFSIIMGCFAFITIIGMIASTQTTNEIKDNSVLVLNLSGQLTER 80

Query: 49  -----------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                                L+  I++   + +   + +   +    +YA  +A+  A+
Sbjct: 81  SEDNNIISQLQGKIGTIGLDNLLSAIDKAKNNKNIKGIYIEAGAFTADSYASLQAVRNAL 140

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
              K     I    ++     Y +S ++N +       +   G+  Q  +VK  L K GV
Sbjct: 141 VDFKKSGKWIITYADIYTQGTYYLSSSANKVYLNPQGQIDWHGLSSQPVFVKDLLKKFGV 200

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
            ++ +K    K+    F   +++    +     ++S +    + VS +RNI        +
Sbjct: 201 KMQVMKVGTYKSATEMFTGDKMSDANREQTSAYLNSIWGNITKDVSATRNISVSSLNAYA 260

Query: 209 DGRIWTGA--EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           D  I   A  +  K  L+D +   ++V   +           I
Sbjct: 261 DSMITFAAPTDYLKYKLVDGLLYTDQVKAVVKKQLGLDKDDDI 303


>gi|260772423|ref|ZP_05881339.1| protease IV [Vibrio metschnikovii CIP 69.14]
 gi|260611562|gb|EEX36765.1| protease IV [Vibrio metschnikovii CIP 69.14]
          Length = 616

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 74/266 (27%), Positives = 128/266 (48%), Gaps = 16/266 (6%)

Query: 38  VARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           +A +   G I D            +   + +   +D   A+I+ + SPGGSA+A E I  
Sbjct: 327 IAVVVASGAIMDGKQSRGNVGGDTVASLLRQARNNDQVKAVILRVDSPGGSAFASEVIRN 386

Query: 89  AIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            I+ +K   KPV+  +  +AAS GY IS +++ IVA  T+L GSIG+       +  L+ 
Sbjct: 387 EIEALKAAGKPVVASMSSLAASGGYWISMSADHIVAQPTTLTGSIGIFSVITTFEKGLNH 446

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
           LG+    V +SP  +     + +N K    +Q  +++ Y  F+ LVSE R +  ++   +
Sbjct: 447 LGIYTDGVGTSPF-SGVGVTTGLNEKVKDAIQMGIENGYQRFISLVSEQRGLSIEEVDKI 505

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPKNYWFCDLKN 265
           + G +WT  +A++ GL+D +G  ++  Q    L   +  ++  I++   P   +   L +
Sbjct: 506 AQGHVWTAKDAQQAGLVDTLGDFDDAVQIAANLAQLEHYNLYWIQEPLTPAQRFIKGLFS 565

Query: 266 LSISSL---LEDTIPLMKQTKVQGLW 288
            + + L   L D IP   Q   Q L 
Sbjct: 566 EAHAQLGVNLSDLIPNALQPTTQQLL 591



 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 111/336 (33%), Gaps = 46/336 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVE-DNSPHVARIAIRGQIEDSQ-------- 51
           + F+   I   + +LS+  +  +Y S  S       P    +   G I +          
Sbjct: 19  ITFIRLAITNLFFLLSIAVIYFLYLSADSSAPVVKQPSALIVNFSGPIVEQSTSLNPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93
                            E++E +     DD+ T L+++L   P  +      I +AI + 
Sbjct: 79  LTDSLLGREIPRENVLFEIVETLRHAKNDDNITGLVLALRDMPETNLTKLRYIAKAINEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ I  A    V   G      Y K  LDKL V+  
Sbjct: 139 KASGKPVYAVGDFYNQSQYYLASYADKIYLAPDGAVLLRGYSSYNLYYKSLLDKLNVNTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF   +++ +A +     +   +  ++  V+ +R+I         D  
Sbjct: 199 VFRVGTYKSAVEPFIRDDMSDQARESASQWLSQLWGAYIDDVATNRHIDAQTLNPTMDEF 258

Query: 212 IWTGAEAK--------KVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDW-------NP 254
           +    +A          +GL+D +  +++V   L  +     +       +        P
Sbjct: 259 LALMKQASGNLADLSLNIGLVDELATRQQVRAQLAEVFGRHGEDSYNAISYDQYRPTVKP 318

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
                  ++  +  S  + D            + ++
Sbjct: 319 RTRPQAKEIAVVVASGAIMDGKQSRGNVGGDTVASL 354


>gi|24373967|ref|NP_718010.1| signal peptide peptidase SppA, 67K type [Shewanella oneidensis
           MR-1]
 gi|24348413|gb|AAN55454.1|AE015683_1 signal peptide peptidase SppA, 67K type [Shewanella oneidensis
           MR-1]
          Length = 614

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 64/268 (23%), Positives = 119/268 (44%), Gaps = 14/268 (5%)

Query: 35  SPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
              V  I   G I                + + +   D    AL++ + SPGGSA+A E 
Sbjct: 324 QDSVGIIVASGTILNGSQPAGQIGGDSTADLLRKARFDKHIKALVLRVDSPGGSAFASEQ 383

Query: 86  IFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           I + +  +K   KPV+  +  +AAS GY IS +++ I A  T+L GSIG+       +  
Sbjct: 384 IRQELLALKAAGKPVVVSMGSLAASGGYWISASADYIFATPTTLTGSIGIFGMITTFEDS 443

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L  LG+    V +S         + ++P+   ++Q  ++  Y  F+ LV++ R I  ++ 
Sbjct: 444 LASLGIHTDGVSTSEWAGLSVTRT-LSPQIESVIQRHIERGYLDFISLVAKERKISLEQV 502

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFCDL 263
             ++ GR+W+G +A ++GL+D +G  ++       L        ++ +        F   
Sbjct: 503 DKIAQGRVWSGKKALELGLVDELGDIDQAVTKAAQLANLSLFDTRLIEQELTPEQRFVQQ 562

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWAVW 291
              S+S+ L  ++     T ++ +   W
Sbjct: 563 MFASVSAYLPASLS--HSTLLEQMLNQW 588



 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 90/277 (32%), Gaps = 36/277 (12%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51
           +K+    +    + L ++    S  ++        + + G I D +              
Sbjct: 23  RKLILNLIFFGFLALILIAIGSSEDIKVEDNSALVLNLAGSIVDQKQQVDPIEAALKQGN 82

Query: 52  -----------ELIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVKNRKPV 99
                      ++I  I+  + D+  + +++ L+          ++I  A+ + K     
Sbjct: 83  NGSSDGEILLADIIYVIDNATHDNRISTIVLDLAELKRAGISKLQSIGDALNRFKESGKK 142

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
           +  +        Y ++  +  I       V   G+     Y K  L+KL +     +   
Sbjct: 143 VVAIGNYYEQNQYFLASFATTIYLNPQGSVSLDGLSMYNQYFKSALEKLKIKAHIFRVGT 202

Query: 160 MKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSD 209
            K+   P+   +++  A +    ++   +  + + V+++R I  +            L  
Sbjct: 203 FKSAVEPYMRDDMSDAAREASSALLADIWQSYTQTVAKNRQIDANALVLDSPSYLAQLDK 262

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
               +   A  +  +D +   EE  + +      ++ 
Sbjct: 263 AEGDSATMALNMKWVDTLATDEEFRKIMLDAVGKENN 299


>gi|148264257|ref|YP_001230963.1| signal peptide peptidase SppA, 36K type [Geobacter uraniireducens
           Rf4]
 gi|146397757|gb|ABQ26390.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Geobacter uraniireducens Rf4]
          Length = 323

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 75/284 (26%), Positives = 129/284 (45%), Gaps = 21/284 (7%)

Query: 31  VEDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLSSPG 77
             +  P +  + I G I + +             E+ E +++  +DD    +IV ++SPG
Sbjct: 40  EGEGKPKLLLLDISGIITEKEKGGRLKQKPSMVAEVKEALQKAEKDDDIAGVIVRINSPG 99

Query: 78  GSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           G+  A + I   +   K RK  PV   +  + AS GY ++ A++ I A  T++ GSIGVL
Sbjct: 100 GTVTASDIIHHELLAFKARKKVPVYACIMGIGASGGYYVATAADEISAHPTAVTGSIGVL 159

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                V+  L K+GVS  +VKS   K   SPF    P+  +++QDV++  +  FV +V  
Sbjct: 160 LMRFEVEGLLTKIGVSEHTVKSGDKKDMLSPFRPATPEEEKIIQDVINRLFGRFVDVVQA 219

Query: 196 SRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
                 +  +  +L+DGRI+T  +A +  LID +G  ++   ++   G  +  R I  + 
Sbjct: 220 RPGNKLERKELEILADGRIYTAEQALQAKLIDRIGYLDDTVSAVKKAGNIEQARVISYYR 279

Query: 254 PPKNYWFCDLKNLSIS----SLLEDTIPLMKQTKVQGLWAVWNP 293
           P              +    SL+      ++     G   +W P
Sbjct: 280 PGSYRGTIYSGEADAANQALSLISINGDGLEMLSDAGFMYLWKP 323


>gi|296125359|ref|YP_003632611.1| signal peptide peptidase SppA, 36K type [Brachyspira murdochii DSM
           12563]
 gi|296017175|gb|ADG70412.1| signal peptide peptidase SppA, 36K type [Brachyspira murdochii DSM
           12563]
          Length = 324

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 70/264 (26%), Positives = 121/264 (45%), Gaps = 17/264 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVS 72
            +S   +    +A I + G I  +              +EL+E  E   +D    A+++ 
Sbjct: 28  INSISANTQEGIAIIDLTGVITHAKRKTSIGLEYPSVTEELMEDFEYYLKDPKVKAIVLQ 87

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + SPGG+  + E   + +Q +K +  KP++     MAAS GY +S  ++ I A E++L G
Sbjct: 88  VDSPGGALTSCEEALKYLQDLKAKYPKPIVASFRSMAASGGYYMSMIADKIYANESTLTG 147

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+ Q+  V   +DK GV + ++KS   K   SPF E     +   QD+       F 
Sbjct: 148 SIGVISQFFNVSGLMDKYGVKMYTIKSGRNKDSLSPFREPREDELAYWQDMTYEFVAQFT 207

Query: 191 RLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
            +V ++R          + DGR+++G  A +VGLID +G  ++  +    LG  +     
Sbjct: 208 NVVEQARGDKIKGNREEIFDGRVFSGKRALEVGLIDAIGTLQDAIKDAAKLGGIEDEEPY 267

Query: 250 KDWNPPKNYWFCDLKNLSISSLLE 273
               P +     ++    IS  ++
Sbjct: 268 IIKKPQQKDNLLNMLFSGISENIK 291


>gi|282899709|ref|ZP_06307673.1| Peptidase S49, SppA [Cylindrospermopsis raciborskii CS-505]
 gi|281195588|gb|EFA70521.1| Peptidase S49, SppA [Cylindrospermopsis raciborskii CS-505]
          Length = 273

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 63/260 (24%), Positives = 126/260 (48%), Gaps = 5/260 (1%)

Query: 36  PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
             +ARI I G I     + ++E I+ +       AL++ + SPGG+    + I+ A++++
Sbjct: 11  KQIARIEITGAIASGTRKRVLEAIKTVEE-KKFPALLLRIDSPGGTVGDSQEIYSALKEL 69

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
             +  ++     ++AS G  I   +  I+A   ++ GSIGV+ +   ++  L+K+GVS K
Sbjct: 70  GKKTKIVASFGNISASGGVYIGMGAEHIMANPGTITGSIGVILRGNNLERLLEKVGVSFK 129

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
            +KS P K   S   E+      ++Q+++D SY  F++ V+++R +P +     +DGRI+
Sbjct: 130 VIKSGPYKDILSFDRELTQPEENILQELIDVSYQQFIQTVAQARALPIETVKTFADGRIF 189

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI--SSL 271
           TG +A  +G++D +G +E+  +    L      + +      +      +   S    S 
Sbjct: 190 TGEQALNLGVVDRLGTEEDARRWTTELVGLDPQKTLCYTLEERKPLLSRVLPGSRYPKSS 249

Query: 272 LEDTIPLMKQTKVQGLWAVW 291
           +   I  ++         +W
Sbjct: 250 IRSGIDWLEFEMSTSGLPLW 269


>gi|121635773|ref|YP_976018.1| putative protease [Neisseria meningitidis FAM18]
 gi|120867479|emb|CAM11256.1| putative protease [Neisseria meningitidis FAM18]
 gi|325131359|gb|EGC54070.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis M6190]
 gi|325137388|gb|EGC59976.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis ES14902]
          Length = 328

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57
           K I      L LV L    F           N+PH A + + G+I +  ++ ++++    
Sbjct: 45  KNIWRAVSTLILVALIAGIFQKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLI 114
           E   ++  A A+++  +SPGGS       F  I+++K + P I       +M AS  Y I
Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPDIPVYLVAEDMCASGCYYI 164

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I A  +S+VGSIGV+         ++K+GV  +   +   K    PFS   P+ 
Sbjct: 165 AAAADKIYADSSSIVGSIGVIGSSFDATELMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            ++ ++++   +  F++ V   R       +   +  GR++TGA+A KVGL+D +G    
Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280
           V + +           + D+ P  ++           + + + + +  ++
Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKAGVREALQAVR 328


>gi|332529429|ref|ZP_08405388.1| peptidase S49 [Hylemonella gracilis ATCC 19624]
 gi|332041075|gb|EGI77442.1| peptidase S49 [Hylemonella gracilis ATCC 19624]
          Length = 382

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 102/254 (40%), Gaps = 7/254 (2%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISRDDSATALIVSLSSPGGSAY 81
                     H A ++IRG+I    E     ++        +  A A+++ + SPGGS  
Sbjct: 123 SHPGTATPQKHTAVVSIRGEISSDSEAGADLVLAAAREAFENTDAQAVVLLIDSPGGSPV 182

Query: 82  AGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
               I   I ++K   +KPV   V E  ASA Y I+ +++ I   + S+VGSIGVL    
Sbjct: 183 QAGIINDEILRLKALHKKPVYAVVEESCASAAYYIAVSADRIFVDKASIVGSIGVLMDGF 242

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                +DKLGV  + + +   K    PFS       +  Q +++  +  F+ +V   R  
Sbjct: 243 GFTGLMDKLGVERRLMTAGENKGFLDPFSPQTVSQREHAQAMLNQIHQQFIAVVKAGRGK 302

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
              +T     G  WTG +A ++GL D +G    V + +          +  +        
Sbjct: 303 RLQETPDTFSGLFWTGEQAVQMGLADQLGSLGYVAREVVQAEALVDYTRTPNVAERLAKR 362

Query: 260 FCDLKNLSISSLLE 273
           F           L+
Sbjct: 363 FGAAVGAGAVRALQ 376


>gi|297559382|ref|YP_003678356.1| signal peptide peptidase SppA, 36K type [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843830|gb|ADH65850.1| signal peptide peptidase SppA, 36K type [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 562

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 109/284 (38%), Gaps = 26/284 (9%)

Query: 26  SWSSHVEDNSPHVARIAIRGQI---------------EDSQELIERIERISRDDSATALI 70
           +      +   H+A I+  G I                 S  +        +D    A++
Sbjct: 264 APQQLSRNTGGHIALISATGTISLGRTRRSPLGGGTVMGSDTVAAAFRAARKDPQVKAVV 323

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLV 129
             + S GGS  A +AI R  +        +   + ++AAS GY ++  S+ +VA   +L 
Sbjct: 324 FRVDSRGGSPTASDAIRRETELTSKAGIPVVAVMGDVAASGGYYVTLGSDAVVAQPGTLT 383

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+   P +    ++ GV+  SV++                  + +  ++D  Y  F
Sbjct: 384 GSIGVITGKPVLGALKEQYGVTSDSVRTGEHAGMFDTDRPFTESEWERVNALLDEIYEDF 443

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
              V+ +R +  ++   ++ GR+WTG +A + GL+D +GG E   +          +   
Sbjct: 444 TGKVAAARGMTREQVHEVARGRVWTGRDAHERGLVDELGGLETAVRLAREKAGAGPLP-- 501

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
               P  N      ++ S           +  +  Q + + W P
Sbjct: 502 VRPFPRPNPLDRIRQHESSED--------VGASGPQTVVSAWGP 537



 Score = 90.4 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 91/236 (38%), Gaps = 8/236 (3%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA- 110
           +++E I R +RD    AL+V + +        + +   +   +          +      
Sbjct: 50  DVLEGIRRGARDPRVAALLVRVDARSLGFAKVQELRDTVADFRAAGKPAVAWADSFGETG 109

Query: 111 ----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                Y ++CA + +V A T ++G  G++ +  +VK  LDKL VS +       K   + 
Sbjct: 110 EGNLPYYLACAFSRVVMAPTGVLGLTGLMMRTTFVKGALDKLDVSYEVGARHEYKNAMNS 169

Query: 167 FSEV--NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLI 224
            +E        +    +V S     V  VS +R +P ++   L     +   EA +  L+
Sbjct: 170 VTETGYTAAQREASDRIVTSLGDQIVEAVSLARGLPREEVRALVSKGPFLAREAVEHKLV 229

Query: 225 DVVGGQEEVWQSLY-ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
           D +  ++EV+  L+  L  +  ++ +  ++          +N      L      +
Sbjct: 230 DGLAHRDEVYAQLFGELSGEPQLQFVTRYHRKHTAPQQLSRNTGGHIALISATGTI 285


>gi|325141318|gb|EGC63806.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis 961-5945]
 gi|325199204|gb|ADY94660.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis G2136]
          Length = 328

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57
           K I      L LV L    F           N+PH A + + G+I +  ++ ++++    
Sbjct: 45  KNIWRAVSTLILVALIAGIFQKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLI 114
           E   ++  A A+++  +SPGGS       F  I+++K + P I       +M AS  Y I
Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPDIPVYLVAEDMCASGCYYI 164

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I A  +S+VGSIGV+         ++K+GV  +   +   K    PFS   P+ 
Sbjct: 165 AAAADKIYADSSSIVGSIGVIGSSFDATELMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            ++ ++++   +  F++ V   R       +   +  GR++TGA+A KVGL+D +G    
Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280
           V + +           + D+ P  ++           + + + + +  ++
Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328


>gi|300711899|ref|YP_003737713.1| signal peptide peptidase SppA, 36K type [Halalkalicoccus jeotgali
           B3]
 gi|299125582|gb|ADJ15921.1| signal peptide peptidase SppA, 36K type [Halalkalicoccus jeotgali
           B3]
          Length = 331

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 121/272 (44%), Gaps = 20/272 (7%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------------EDSQELIER 56
            ++++   + +   S  +     + +VA++A+ G I                 + +++E+
Sbjct: 41  LLVIATALIGLRIASRLASKAFTTYNVAQVAVEGPISRDGGGGRLPNGPNTTPTDDVVEQ 100

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116
           IE  + D     L+V L++PGG     + I RAI       P I    ++  S GY I+ 
Sbjct: 101 IEAAADDGDVEGLLVKLNTPGGEVVPSDDIRRAIVAF--EGPAIAYTTDVCGSGGYWIAS 158

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
             + ++A E SLVGSIGV+          +++G+S +   +   K    P  E++     
Sbjct: 159 GCDELLAREASLVGSIGVIGSRVNAAALAERVGLSYERFAAGEFKDAGVPLREMDDHERA 218

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
            +Q ++D  Y  FV  V+E R +  ++    ++ R++ G EA ++GL+D +G +E+    
Sbjct: 219 YLQGLIDDFYGQFVERVAEGRELSEEEVRA-TEARVYVGEEALELGLVDALGTREDAEDR 277

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
           L  L       +++ + P +          + 
Sbjct: 278 LADLLDI--DPEVRAFEPDQGMMARLSIGSAS 307


>gi|309379804|emb|CBX21580.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 328

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 124/283 (43%), Gaps = 13/283 (4%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57
           K I      L LV L    F           N+PH A + + G+I +  ++ ++++    
Sbjct: 45  KNIWRAVSTLILVALIAGIFQKDEGALQLTGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114
           E   ++  A A+++  +SPGGS       F  I+++K + P   V     +M AS  Y I
Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I A  +S+VGSIGV+         ++K+GV  +   +   K    PFS   P+ 
Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            ++ ++++   +  F++ V   R       +   +  GR++TGA+A+KVGL+D +G    
Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADAQKVGLVDGLGNIYS 284

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
           V + +          +  D+               +   L+  
Sbjct: 285 VARDVVKAPDLVDYTRQDDFGTLLGRRLGAELKAGVREALQAV 327


>gi|227551682|ref|ZP_03981731.1| S49 family peptidase [Enterococcus faecium TX1330]
 gi|257884398|ref|ZP_05664051.1| protease/peptidase [Enterococcus faecium 1,231,501]
 gi|257895718|ref|ZP_05675371.1| protease/peptidase [Enterococcus faecium Com12]
 gi|293377673|ref|ZP_06623862.1| signal peptide peptidase SppA, 36K type [Enterococcus faecium
           PC4.1]
 gi|293571866|ref|ZP_06682882.1| protease/peptidase protein [Enterococcus faecium E980]
 gi|227179123|gb|EEI60095.1| S49 family peptidase [Enterococcus faecium TX1330]
 gi|257820236|gb|EEV47384.1| protease/peptidase [Enterococcus faecium 1,231,501]
 gi|257832283|gb|EEV58704.1| protease/peptidase [Enterococcus faecium Com12]
 gi|291608120|gb|EFF37426.1| protease/peptidase protein [Enterococcus faecium E980]
 gi|292643673|gb|EFF61794.1| signal peptide peptidase SppA, 36K type [Enterococcus faecium
           PC4.1]
          Length = 341

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 66/276 (23%), Positives = 130/276 (47%), Gaps = 21/276 (7%)

Query: 30  HVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSP 76
              D++  + ++ + G I                +  +E+++ +  D +   + + ++SP
Sbjct: 53  EEGDSTQKIVKLTVDGTIAAGGSSGLFASEGYNHENFMEQLKAVEEDPTVKGIFLEVNSP 112

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG  Y    I + +  ++     P+   +  MAAS GY IS  ++ I A E ++ GSIGV
Sbjct: 113 GGGVYESAEIAKKLDTIRKEHDIPMYVSMKNMAASGGYYISAQADKIFATEETVTGSIGV 172

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +         L+KLGV   +VKS  +K   S       +   ++Q  +DS+Y  FVR+VS
Sbjct: 173 IMSGLNYSGLLEKLGVEDTTVKSGALKDMGSGTRPKTKEEEAVLQAYIDSAYQRFVRIVS 232

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           E RN   +    ++DGRI+ G +AK+VGL+D +G  E+  Q++      +   ++ +++ 
Sbjct: 233 EGRNKSEEAVKKIADGRIYDGVQAKEVGLVDELGFPEDALQAMRKEQKLEDA-ELVEYSS 291

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
           P + +        ++         +K ++   + ++
Sbjct: 292 PSSGFASTWLGSKLA-----EFQGLKSSETSQILSI 322


>gi|209526666|ref|ZP_03275190.1| signal peptide peptidase SppA, 36K type [Arthrospira maxima CS-328]
 gi|209492902|gb|EDZ93233.1| signal peptide peptidase SppA, 36K type [Arthrospira maxima CS-328]
          Length = 273

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 69/260 (26%), Positives = 133/260 (51%), Gaps = 5/260 (1%)

Query: 36  PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
             +ARI I G I     + ++E ++ +       AL++ + SPGG+    + I+ A++ +
Sbjct: 11  KQIARIEISGAIAGDTRKRVLEALKTVEE-RKFPALLLRIDSPGGTVGDSQEIYSALKSL 69

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           + +  ++     ++AS G  I   +  I+A   ++ GSIGV+ +   ++  L+K+GVS K
Sbjct: 70  RKKVKIVASFGNISASGGVYIGMGAEHIMANPGTITGSIGVILRGNNLERLLEKVGVSFK 129

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
            +KS P K   +   E+     Q++Q+++D+SY  FV  V+ESRN+  +     +DGRI+
Sbjct: 130 VIKSGPYKDILAFDRELTEPEQQILQELIDTSYQQFVSTVAESRNLEIEAVRSFADGRIF 189

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLK-NLSISSL 271
           TG +A ++G+ID +G +E+  +    +   D    +      PK+     L  NL+ ++ 
Sbjct: 190 TGEQALQLGVIDRLGSEEDARRWTAEMVNLDPDKTECCTLEKPKSLLNRVLSNNLAATNR 249

Query: 272 LEDTIPLMKQTKVQGLWAVW 291
           + D    ++         +W
Sbjct: 250 ISDARNWVEFELSTSGLPLW 269


>gi|218962159|ref|YP_001741934.1| putative protease IV (signal peptide peptidase) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730816|emb|CAO81728.1| putative protease IV (signal peptide peptidase) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 571

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 121/255 (47%), Gaps = 14/255 (5%)

Query: 21  TVVYFSWSSHVEDNSPHVARIAIRGQIE-------DSQELI------ERIERISRDDSAT 67
            +   ++S   +     +A + + G I         SQ +I      + I++I +     
Sbjct: 274 FMKIANYSPTAKKKGDKIAVVYLNGNIAPVSGSNFGSQGIISEAKVKKIIKQIHQHKDIK 333

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           A+++ ++SPGGSA   E I++ + K+K   P++  +   AAS GY ISCA + ++A   +
Sbjct: 334 AVVLRINSPGGSALESELIYQQLLKLKREYPLVVSMGGTAASGGYYISCAGDYLIADPGT 393

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           L GSIGV+   P +     K+GV  +++K        SP    +P  ++ ++    ++Y+
Sbjct: 394 LTGSIGVIGLIPEMAGLGKKIGVRSQTLKYGKFAGALSPLEHYDPALIESLKRSSTATYN 453

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F + V  +R I  +    +++GRI++  +A    LID +G  ++       L    S  
Sbjct: 454 EFKQRVMTARKISPENIEAVAEGRIFSAEDALTHKLIDEIGTLDKAIAKAAGLAKVTSYS 513

Query: 248 KIKDWNPPKNYWFCD 262
            + ++   ++YW   
Sbjct: 514 SV-NFPKKESYWEAL 527



 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 102/274 (37%), Gaps = 25/274 (9%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED----------------S 50
            +        L  +       +   +  S     +     I D                 
Sbjct: 14  FVIALLAAFILGFIFTFGSHGAKSAKIPSNAWLYVNPSALIPDYNELEELRFVNVSSPSV 73

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           QE+  +I+  ++D+    +++       +  A E +  AI   +     +    E     
Sbjct: 74  QEICAKIKLAAKDERIKGILLQPQMIMTNYPALEEMSLAIGTFQKSGKPVLAFGENFTQG 133

Query: 111 GYLISCASNIIVAAETSLV--GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167
            YL++  ++ I    ++       GV     + K  LDKLG+ +  ++S   K    PF 
Sbjct: 134 DYLLASCADKIYMEPSASAGLALQGVSANMLFYKEMLDKLGIKMHILQSGEYKGAGEPFS 193

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR---IWTGAEAKKVGL 223
            +E++    + +   +   Y+  + LV+++R +   +   + + R     +  +AK++ L
Sbjct: 194 QTELSKGTRENIDAALYDIYNHLLSLVAQNRKLETTQVKDIFEKRDDFFLSAEKAKELKL 253

Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           ID    ++E+ +SL     + +  KI +++P   
Sbjct: 254 IDYAMSRDEMLKSLG--LEEDNFMKIANYSPTAK 285


>gi|91204301|emb|CAJ71954.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 362

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 136/289 (47%), Gaps = 28/289 (9%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVE----------DNSPHVARIAIRGQIEDSQE 52
           F L  + +  +++  + +     +  +  +               +A I+++G + +   
Sbjct: 38  FFLCTLFSFLLLIGSLMMGKSIIAGGAMDKKYVTEEIVEGSGENKIAVISVKGILTNETT 97

Query: 53  -------------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--K 97
                        + E++E  + D    A+++ + SPGG   A + ++  I K K    K
Sbjct: 98  GNLFIEKPSIVEIVKEQLEHAANDVQVKAVLLEIESPGGGITASDIMYHQIIKFKKNTQK 157

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
            ++  + ++AAS GY I+ A++ IVA  T++ GSIGV+     +  F+++ GV   S+ S
Sbjct: 158 KIVVYMEDIAASGGYYIASAADFIVAHPTTITGSIGVIMPLINISEFINRHGVVDNSIAS 217

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
             MK   SP  ++  +  +++Q++++  Y  FV +VS  RN+  ++   ++DGRI+TG +
Sbjct: 218 GDMKEIGSPLKQMTEEETEILQNIINEMYMQFVEVVSIGRNLDVEEVKKIADGRIYTGKQ 277

Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           A + GL+D +G  E+                ++     + Y F +L  L
Sbjct: 278 ALEAGLVDKIGYLEDAIGMAKKASGIDEATIVRY---KRLYGFAELFGL 323


>gi|325143533|gb|EGC65854.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis M01-240013]
          Length = 328

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57
           K I      L LV L    F           N+PH A + + G+I +  ++ ++++    
Sbjct: 45  KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114
           E   ++  A A+++  +SPGGS       F  I+++K + P   V     +M AS  Y I
Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I A  +S+VGSIGV+         ++K+GV  +   +   K    PFS   P+ 
Sbjct: 165 AAAADKIYADSSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            ++ ++++   +  F++ V   R       +   +  GR++TGA+A KVGL+D +G    
Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGDRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280
           V + +           + D+ P  ++           + + + + +  ++
Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328


>gi|163748928|ref|ZP_02156179.1| signal peptide peptidase SppA, 67K type [Shewanella benthica KT99]
 gi|161331304|gb|EDQ02192.1| signal peptide peptidase SppA, 67K type [Shewanella benthica KT99]
          Length = 615

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 114/252 (45%), Gaps = 12/252 (4%)

Query: 35  SPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
              V  I  +G I            +   + + +   DD   A+++ + SPGGSA+A E 
Sbjct: 326 EDTVGIIVAKGTILNGNQPAGQIGGESTSQLLRKARFDDKIKAVVLRVDSPGGSAFASEQ 385

Query: 86  IFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           I + +  +K   KPV+  +   AAS GY IS +++ I A  T+L GSIG+       +  
Sbjct: 386 IRQEVLALKTAGKPVVVSMGSYAASGGYWISASADYIYATPTTLTGSIGIFGMITTFEDS 445

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L  LG+    V +S      S    + P+   ++Q  ++  YH F+ LV++ R++  +  
Sbjct: 446 LSSLGIHTDGVATSQWAG-ISVAKGLTPEIKSVIQRHIERGYHDFISLVAKERDMSLEDV 504

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFCDL 263
             ++ GR+W+G +A ++GLID +G  ++       +        +I +        F   
Sbjct: 505 DAIAQGRVWSGRKALELGLIDELGDLDDAVAKAAEMADLAEFDSQIIEQELSPKELFIQE 564

Query: 264 KNLSISSLLEDT 275
              S ++ L  +
Sbjct: 565 MFASAAAYLPQS 576



 Score = 82.7 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/313 (12%), Positives = 105/313 (33%), Gaps = 40/313 (12%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFS--WSSHVEDNSPHVARIAIRGQIEDSQ----------- 51
            +K+    +    + + +V  +      V+  S     + + G I + +           
Sbjct: 22  FRKLVLNLLFFGFLAIIIVAVAVGIDDDVQLESGSALVLDLAGSIVEQKRQVDPIEAAMK 81

Query: 52  --------------ELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNR 96
                         +++  I+  + D+  +A+++ +     +     ++I  A+ + K  
Sbjct: 82  SSKNSHGNGEILLADILNVIDNAAADERISAIVLDIGHLRWTGISKLQSIGDALTRFKAT 141

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
              I           Y ++  ++ I       V   G+     Y K  LDKL ++    +
Sbjct: 142 GKPILATANWYGQNQYFLASFADTIYLNPQGSVELNGLSRYRQYYKSALDKLKINAHVFR 201

Query: 157 SSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLV 206
               K+   P+   +++P A +   ++++  +  +   VS +R+I  ++           
Sbjct: 202 VGTFKSAVEPYIRDDMSPAAKEANIELLNDIWASYAATVSSNRDIKPEQLVLDAEDYLRE 261

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           L      +   A  +  +D +   E     +       +      +     Y +  L + 
Sbjct: 262 LDKADGKSADMAINMHWVDELASAEAFRLEMIDTVGKAAEGN--SYKQVSLYDYQSLMST 319

Query: 267 SISSLLEDTIPLM 279
                +EDT+ ++
Sbjct: 320 QADLFIEDTVGII 332


>gi|73667234|ref|YP_303250.1| signal peptide peptidase A [Ehrlichia canis str. Jake]
 gi|72394375|gb|AAZ68652.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Ehrlichia canis str. Jake]
          Length = 288

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 77/251 (30%), Positives = 155/251 (61%), Gaps = 2/251 (0%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVED--NSPHVARIAIRGQIEDSQELIERIE 58
           +   +K  +    ++   +L +  +   S V +  ++ ++A++ I G+IE S+E+   ++
Sbjct: 11  LNSKVKLWRFLVFLMVFASLILCNYVDISKVSNFLDNKYIAKVNIEGKIETSEEMDSLLK 70

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118
           +I++D     LI++++SPGG+    E +++ I+ +   KPV+  ++++AAS GY+ + A+
Sbjct: 71  KIAKDSHVIGLILNINSPGGTITGSEILYQNIRNIAKNKPVVAVLNDLAASGGYMTAIAA 130

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I+A  T++ GSIGVL QY  V    +K+G+S+KS+KSS +KA  SPF E   +  + +
Sbjct: 131 DYIIARHTTITGSIGVLMQYFGVSSLAEKMGISLKSIKSSNLKAATSPFEEFTKEKEESI 190

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           + +V+ SY++F+ +V++ R +   + L ++DG I+TG+EA  +GL+D +GG++E      
Sbjct: 191 RRIVNESYNYFIDIVADRRKMEKSQVLKIADGSIYTGSEALSIGLVDQIGGEDEAISWFQ 250

Query: 239 ALGVDQSIRKI 249
           +  ++    K+
Sbjct: 251 SQNINTQKVKV 261


>gi|325207025|gb|ADZ02478.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis M04-240196]
          Length = 328

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57
           K I      L LV L    F           N+PH A + + G+I +  ++ ++++    
Sbjct: 45  KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114
           E   ++  A A+++  +SPGGS       F  I+++K + P   V     +M AS  Y I
Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I A  +S+VGSIGV+         ++K+GV  +   +   K    PFS   P+ 
Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            ++ ++++   +  F++ V   R       +   +  GR++TGA+A KVGL+D +G    
Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGSRLKFQQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280
           V Q +           + D+ P  ++           + + + + +  ++
Sbjct: 285 VAQDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328


>gi|15839274|ref|NP_299962.1| protease IV [Xylella fastidiosa 9a5c]
 gi|9107924|gb|AAF85482.1|AE004074_6 protease IV [Xylella fastidiosa 9a5c]
          Length = 633

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 63/267 (23%), Positives = 124/267 (46%), Gaps = 11/267 (4%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVS 72
           +      S     S  +A +   G+I            +     + +   +D+  A+++ 
Sbjct: 320 LSLLDAQSVPLGTSSQIAVVVAAGEIKGGDQPAGYIGGESTSMLLRKARDEDAVKAVVLR 379

Query: 73  LSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
           ++SPGG  +A E I R +  ++   KPV+  + +MAAS GY IS  ++ I A  +++ GS
Sbjct: 380 VNSPGGEVFASEQIRREVVALRKVGKPVVVSMGDMAASGGYWISMDADRIYADPSTISGS 439

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IG+    P +   LDK+GV    V ++           ++P+  QM+Q+V+D  Y  F  
Sbjct: 440 IGIFGLMPNITRTLDKMGVHTDGVGTTRFAGALDITRTLDPQVGQMLQNVIDKGYADFTS 499

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIK 250
            V+++R+    +   ++ GR+W+GA+AK+ GL+D +GG  E            +    ++
Sbjct: 500 KVAQARHRSVQEIDSIARGRVWSGAQAKERGLVDELGGVREAITDAAKRAKLGEGHYSVR 559

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIP 277
             +   + +   + N+  + +    + 
Sbjct: 560 YVDKAVSPFMQFIINMMSTRIGNWALG 586



 Score = 65.8 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 88/251 (35%), Gaps = 16/251 (6%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAAS 109
           ++LI  IE  ++D     +++ L     S YA    +  A+Q +K     +    E    
Sbjct: 99  RDLIRVIEAAAKDKKVERVLLDLDKLQPSGYASLREVVAALQNLKGSGKQLVAFSESMTQ 158

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPF- 167
           + YL++  ++ I       V   G+     Y +  L +KLGV +   +    K+   PF 
Sbjct: 159 SQYLLAAQADEIYLDPMGSVLLEGLAHYRQYFRKGLQEKLGVDVHLFRVGEYKSAAEPFV 218

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW--------TGAEA 218
               +  A +     ++  +  ++  ++++R +       + +                A
Sbjct: 219 LDAASADAKEADLFWMNDIWQRYLADIAKARKLDSAHLNTIVERLPQDIAANHGDLAKYA 278

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIR----KIKDWNPPKNYWFCDLKNLSISSLLED 274
               L+D +  +E+V Q +   GV         +  D+    +        L  SS +  
Sbjct: 279 LAQKLVDGLKTREQVNQLMIQRGVADKKADGGFRNVDFGTYLSLLDAQSVPLGTSSQIAV 338

Query: 275 TIPLMKQTKVQ 285
            +   +     
Sbjct: 339 VVAAGEIKGGD 349


>gi|225175869|ref|ZP_03729862.1| signal peptide peptidase SppA, 36K type [Dethiobacter alkaliphilus
           AHT 1]
 gi|225168793|gb|EEG77594.1| signal peptide peptidase SppA, 36K type [Dethiobacter alkaliphilus
           AHT 1]
          Length = 304

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 71/267 (26%), Positives = 134/267 (50%), Gaps = 21/267 (7%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPH--------VARIAIRGQIEDS------------QE 52
           ++L+++ +TV +          +P         VA I + G I D             ++
Sbjct: 10  IVLAVIGITVFFALAQIFRPPGAPQRGAGSAQAVAVIHLEGIIMDGQIQPLFGAPGGTRQ 69

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAG 111
           +I +++  + D    A+++ ++SPGG+  A + ++  +Q++K   KPV+  V EMAAS G
Sbjct: 70  IIGQLQDAAADRDVAAVVLRINSPGGTPAASQEVYNEVQRLKESGKPVVVSVGEMAASGG 129

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ IVA   S+ GSIGV+ +        + LG+  +  KS   K   S    ++
Sbjct: 130 YWIASAADEIVANPASVTGSIGVIMETTNFVELYEMLGIESEVFKSGQYKDMGSAARPLS 189

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
               +++Q +VD  +  FV +V+  R++  +  L ++DGRI+TG +AK++GL+D +G   
Sbjct: 190 DDEREIIQSMVDDIFQQFVDVVASGRSLDREAVLEVADGRIFTGRQAKELGLVDRLGDLN 249

Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNY 258
               +   L   +   +IK+      +
Sbjct: 250 TAIDAAGELAGIEGTPRIKEMRTRSPW 276


>gi|224825741|ref|ZP_03698845.1| peptidase S49 [Lutiella nitroferrum 2002]
 gi|224601965|gb|EEG08144.1| peptidase S49 [Lutiella nitroferrum 2002]
          Length = 312

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 68/275 (24%), Positives = 115/275 (41%), Gaps = 18/275 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVE-----DNSPHVARIAIRGQIEDS----QELIERI 57
           KI  R   L ++   V    ++             H A + ++G I+      ++LI  +
Sbjct: 30  KIFFRLAWLVIIGAAVFGLFYTKDEVPGERLIGDGHTATLQLKGVIDSDNDTAEKLITGL 89

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAGYLI 114
               RD +   +I+  +SPGGS      ++  I++   +    P+   V E+ AS  Y I
Sbjct: 90  NDAYRDKNTRGIIIQANSPGGSPVLSGMVYDEIRRQKKLHPAIPLYVVVEEVCASGCYYI 149

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I   + S++GSIGVL         ++KLGV  +   S   KA   PFS +NPK 
Sbjct: 150 AAAADKIFVDKASIIGSIGVLSDGFGFTGVMEKLGVERRLKTSGENKAMGDPFSPLNPKQ 209

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
             + Q ++D  +  F+  V + R         L  G IW G ++  +GL D  G    V 
Sbjct: 210 EAIRQQLLDDIHQQFISAVKDGRGARLHNDPELFSGLIWLGTKSIPLGLADGYGTVHSVA 269

Query: 235 QSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           + +          K  D+ P   +     + L + 
Sbjct: 270 RDVIK------SEKTVDYTPEDTFPSRFARRLGVE 298


>gi|325109492|ref|YP_004270560.1| signal peptide peptidase SppA, 36K type [Planctomyces brasiliensis
           DSM 5305]
 gi|324969760|gb|ADY60538.1| signal peptide peptidase SppA, 36K type [Planctomyces brasiliensis
           DSM 5305]
          Length = 358

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 127/273 (46%), Gaps = 24/273 (8%)

Query: 7   KIKTRYVMLSLVTLTVVYFS------------------WSSHVEDNSPHVARIAIRGQIE 48
           +  TR + ++ +   ++ F+                  + S  +  +  +A I++   I 
Sbjct: 40  RWGTRLLTIAFIFSLLLNFALFSAYGTYLGEFDGAQERYHSGSKTATDKLALISVEATIM 99

Query: 49  D--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
              ++ +I+ I + + DD     +V + SPGG       I+  ++K+  +KPV  ++  +
Sbjct: 100 PPFTERIIDHIRKATEDDDVKGAVVVVDSPGGLVADSHQIYHELKKLAEKKPVFVQMKRI 159

Query: 107 AASAGYLISCA---SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
           AAS GY ++     S  IVA  T+  GSIGV+  +  +     ++GV  + + +   K  
Sbjct: 160 AASGGYYVAMGAGKSGKIVAEPTTWTGSIGVIIPHYDLTELAGQIGVKSEPLTTGEFKDS 219

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-NIPYDKTLVLSDGRIWTGAEAKKVG 222
            S F  ++ +   + + ++D +Y  F+ ++ + R ++   +   ++ GRI+T  +A   G
Sbjct: 220 LSSFKPLSDRERDVWKGILDDAYQRFLSVIEQGRPDMSRQQIEDVATGRIFTSQQALAEG 279

Query: 223 LIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
           L+D +G  +E    L      +S R I+  +PP
Sbjct: 280 LVDEIGFLDETIAGLAEQLNLKSYRVIEYQHPP 312


>gi|196249953|ref|ZP_03148648.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. G11MC16]
 gi|196210467|gb|EDY05231.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. G11MC16]
          Length = 335

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 67/280 (23%), Positives = 127/280 (45%), Gaps = 18/280 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSS 75
              D    +  + + G IED+              Q  ++ I+++  DDS  A+++ ++S
Sbjct: 54  EDGDPLKKIVVLEVNGVIEDTGEAETFFSSSFYNHQAFLKMIKQVKEDDSVKAIVLRINS 113

Query: 76  PGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           PGG       +   + K+K     P+   +  MAAS GY I+ A + + A+  ++ GSIG
Sbjct: 114 PGGGVVESAEVHNQLLKLKKETKKPIYVSMGAMAASGGYYIATAGDKLFASPETITGSIG 173

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V+ Q    +    K GV + ++KS P K   +P  ++     +++Q +++ SY  FV ++
Sbjct: 174 VIMQSINYEGLAKKYGVELVTIKSGPYKDIMNPARKMTDAEQEILQRLINQSYEGFVDVI 233

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW- 252
            E R +  +    L+DGRI+ G +AK + LID  G  ++   +L         + +K   
Sbjct: 234 VEGRKLSEEAVRKLADGRIYDGRQAKALQLIDEFGYLDDTIAALKKEHRLSGAQVVKYVS 293

Query: 253 -NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
             P  + +     N    +   + I L+ +     L  ++
Sbjct: 294 DTPWSSLFGVISNNAKPETEASELIRLLSRPSSPRLMYLF 333


>gi|121611687|ref|YP_999494.1| peptidase S49 [Verminephrobacter eiseniae EF01-2]
 gi|121556327|gb|ABM60476.1| peptidase S49 [Verminephrobacter eiseniae EF01-2]
          Length = 323

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 126/288 (43%), Gaps = 12/288 (4%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSW----SSHVEDNSPHVARIAIRGQIE-----DSQELI 54
            +++ +T + +  LV +  + F         +  ++PH A + I+G+I       ++ ++
Sbjct: 28  SIRRWRTFFRLAWLVLMASIAFVTLRQTVPGISKSAPHTAMVDIKGEIAAGAGASAEFVV 87

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGY 112
             +     +D + AL++ ++SPGGS      I   I+++K +  KP+   V E  ASA Y
Sbjct: 88  AAMRSALENDGSQALVLLINSPGGSPVQAGIINDEIRRLKAKHNKPIYAVVEETCASAAY 147

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            I+ A++ I   + S+VGSIGVL         ++KLGV  + + S   K    PFS    
Sbjct: 148 YIAAATDDIYVDKASIVGSIGVLMDGFGFTGTMEKLGVERRLLTSGENKGFLDPFSPQTD 207

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231
           K     Q ++D  +  F+  V   R      T      G  WTG +A ++GL D +G  +
Sbjct: 208 KQRAYAQTMLDQIHQQFIAAVKAGRAERLKSTSSDTFSGLFWTGQQAVEMGLADKLGNLD 267

Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
            V + +          + ++        F  L     ++L    +  +
Sbjct: 268 YVAREVVKAEDIIDYTRRENVAELLAKRFELLAKRFGTALGVGIMKSL 315


>gi|329118386|ref|ZP_08247092.1| signal peptide peptidase SppA [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465432|gb|EGF11711.1| signal peptide peptidase SppA [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 352

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 66/265 (24%), Positives = 107/265 (40%), Gaps = 15/265 (5%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE-----LIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
              N  H A I + G I    +     L + +E    D +   +I+  +SPGGS      
Sbjct: 93  GAKNKEHTAVIKLNGVIGGGYQDQVALLRDGLEAAYADKNVKGIIIRANSPGGSPVVSNT 152

Query: 86  IFRAIQKV---KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            F  I+++       P+     +M AS  Y I+ A++ I A  +SLVGSIGV+       
Sbjct: 153 AFNEIRRLKEQHKDIPLYLVAEDMCASGCYYIAAAADKIYADPSSLVGSIGVIGGSFDFT 212

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             +DKLG+  +   +   K    PFS   P+   + Q ++D  +  F+  V   R     
Sbjct: 213 GIMDKLGIKRRLRTAGSNKGMGDPFSPETPEQTAIWQQMLDDIHGEFINAVKTGRGSRLK 272

Query: 203 KTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                +  GRI+TG EA+K GLID  G    V +             + D+ P ++    
Sbjct: 273 TNDPQIFSGRIYTGLEAQKNGLIDGFGNIYSVARDQIK------APDLVDYTPDEDDLAR 326

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQG 286
            +     S +       ++    +G
Sbjct: 327 AISRRLNSEVQNQVRQSLENLDTKG 351


>gi|85059328|ref|YP_455030.1| protease 4 [Sodalis glossinidius str. 'morsitans']
 gi|84779848|dbj|BAE74625.1| protease IV [Sodalis glossinidius str. 'morsitans']
          Length = 616

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 67/281 (23%), Positives = 126/281 (44%), Gaps = 15/281 (5%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSA 66
           +   +++  +   +  +     +A I   G I D              ++I     D   
Sbjct: 304 AFNGISIYDYQPVTSTQQGG-QIAVIFANGAIIDGPETPGSVGGDTTADQIRDARMDPDI 362

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAE 125
            A++  ++SPGGS  A E I   +   +   KPV+  +  +AAS GY +S  +N I+A+ 
Sbjct: 363 KAIVFRVNSPGGSVTASEVIRSELAAARAAGKPVVISMGGIAASGGYWVSTPANYIIASA 422

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
           ++L GSIG+      V+  LD +GV    V +SP+    S    +  +  QMMQ  V++ 
Sbjct: 423 STLTGSIGIFGVVNTVENSLDSIGVHTDGVATSPLADV-SLTKTLPAEFSQMMQLSVENG 481

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  F+ LV++SR+   ++   +  G +W G++A + GL+D VG  ++       L     
Sbjct: 482 YRNFITLVAQSRHKTPEEIDKIGQGHVWIGSDAVQNGLVDRVGDFDDAVSKAAELAQL-K 540

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
             ++  +    +    +L     S+ +   +P + Q+ +  
Sbjct: 541 QYQLNWYL--DDPGLWNLLFTQTSASVYALLPQLIQSWLPA 579



 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 44/315 (13%), Positives = 101/315 (32%), Gaps = 45/315 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + F+ + I   ++++ ++ + +      +           + + G + D           
Sbjct: 19  LNFIREFILNVFLVVLIIVVGIYLQMRHTPPTLAKG-ALVMDLTGTVVDKPAMNNKFRQL 77

Query: 52  ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92
                             ++++ + +   D + T L++SL    G+  A  E I +A+++
Sbjct: 78  GRELLGASSNRLQENSLFDVVDTLRQAKGDANITGLVLSLKDFAGADQASLEYIGKALRE 137

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            ++    I  V +  + A Y ++  +N I       V   G+     Y K  LDKL V+ 
Sbjct: 138 FRDSSKPIYAVGDSYSQAQYYLASYANKIYLTPQGAVDLHGIATNNLYYKTLLDKLKVNS 197

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203
              +    K+   PF    ++  A +     V   +  ++  V+ +R     +       
Sbjct: 198 HIFRVGTYKSAVEPFLRDNMSDDAREADSRWVGQLWQHYLTTVATNRQTTPAQLFPGAQA 257

Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGG---QEEVWQSLYALGVDQSI---RKIKDWNPPK 256
               L      T   A     +D V      +      +             I D+ P  
Sbjct: 258 MLDDLRAVEGNTAQFALNNKWVDEVASRSAIDAALTKAFGWNKRDKAFNGISIYDYQPVT 317

Query: 257 NYWFCDLKNLSISSL 271
           +        +  ++ 
Sbjct: 318 STQQGGQIAVIFANG 332


>gi|325578196|ref|ZP_08148331.1| signal peptide peptidase SppA [Haemophilus parainfluenzae ATCC
           33392]
 gi|325159932|gb|EGC72061.1| signal peptide peptidase SppA [Haemophilus parainfluenzae ATCC
           33392]
          Length = 620

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 120/236 (50%), Gaps = 11/236 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGG 78
            S   +    VA + + G I D +          +++ + +   ++   A+++ ++SPGG
Sbjct: 319 FSVDPNEKNIVAVVNVEGTIIDGESDEESAGGDTIVKLLRQAYDNEKVKAVVLRVNSPGG 378

Query: 79  SAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           SA+A E I +  + ++   KPV+  +  MAAS GY IS  ++ IVA + ++ GSIG+   
Sbjct: 379 SAFASEIIRQETENLQKSGKPVVVSMGGMAASGGYWISSTADYIVADKNTITGSIGIFAL 438

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +P  +  + K+G+S   V ++ +    +  S +      + Q  +++ Y  F+ +VS  R
Sbjct: 439 FPTFENTIKKMGMSTDGVATTDLAETSAL-SPLGKNTQDIYQLSIENGYDRFLEVVSRGR 497

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
            +  DK   ++ G++W G +A+K GL+D +G  +     + AL      + + +++
Sbjct: 498 QLSKDKVDKIAQGQVWLGQDAQKNGLVDELGDIDVAIDKVVALVNQHPDKYMDNFS 553



 Score = 70.4 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 86/237 (36%), Gaps = 34/237 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVE-----DNSPHVARIAIRGQIEDSQ---- 51
           + F+ + +   +V L  V   +         +             + + G + D+     
Sbjct: 15  LNFI-RNLVMNFVFLLFVLALIFLVGLLGDGKKSQVLSGDQGALYLNLTGYLADNTEDML 73

Query: 52  ---------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRA 89
                                ++++ I     D+    L+++L+   G      E + +A
Sbjct: 74  SWEKELQRLNNEKVSYKYSTFDVVQSILSAKDDERIRGLVLNLNDFEGGDLPSLEYVGKA 133

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           IQ  K  +  +    +    + Y ++  ++ I       VG  G+ ++  Y K  L+KL 
Sbjct: 134 IQSFKESEKPVIAYADNYTQSQYFLASFADEIYLNPIGQVGIQGLRYENLYFKSMLEKLE 193

Query: 150 VSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           ++    +    K+   PF   +++P+A   MQ  +   +  +++ +  +R+I  +  
Sbjct: 194 ITPHIFRVGTYKSAVEPFLRDDMSPEARANMQKWLGGMWQNYMQTLMVNRHITANDV 250


>gi|87118926|ref|ZP_01074824.1| Peptidase S49, SppA [Marinomonas sp. MED121]
 gi|86165317|gb|EAQ66584.1| Peptidase S49, SppA [Marinomonas sp. MED121]
          Length = 359

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 69/274 (25%), Positives = 125/274 (45%), Gaps = 17/274 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDSQEL-----IERIE 58
           KI  R +  +L+   +      + +   + +S +VA I + GQI   Q +     +  I+
Sbjct: 80  KIFFRGLSFALIISVIALVMSDADIAEMDTSSNYVAVIPMEGQIGAGQPIDANVVLPLID 139

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAGYLIS 115
                    AL++ ++SPGGS      I+ AI   ++     P    V ++AAS GY I+
Sbjct: 140 DAYAKPGIQALVLKMNSPGGSPVHSGIIYDAIKLKRQQYPDVPTYVVVEDLAASGGYYIA 199

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I+  + SLVGSIGV+         L K+GV  +   +   KA   PF  + P +V
Sbjct: 200 SAADTILVDKASLVGSIGVISAGFEATELLKKIGVERRVFTAGENKAFLDPFMPMAPASV 259

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           +  Q V+D ++  F+  V E R      +  L  G +++G++A ++GL+D +    ++  
Sbjct: 260 KKWQAVLDETHKQFISAVKEGRGERLTDSPDLFSGAVFSGSQAVELGLVDGLSSFYQLVN 319

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
                  +     +  +   K  W   +K+  +S
Sbjct: 320 ------GEYKGLDVLYFREDKQPWEEVVKSFGVS 347


>gi|188533707|ref|YP_001907504.1| protease 4 [Erwinia tasmaniensis Et1/99]
 gi|188028749|emb|CAO96611.1| Protease IV [Erwinia tasmaniensis Et1/99]
          Length = 618

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 67/268 (25%), Positives = 111/268 (41%), Gaps = 14/268 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGS 79
                   +VA I   G I D +E             I     D    A++  ++SPGGS
Sbjct: 319 KDANTVDGNVAVILASGAIMDGEEAPGSVGADTTALEIRSARLDPKIKAIVFRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +       KPV+  +  MAAS GY +S  +N ++A+  +L GSIG+    
Sbjct: 379 VTASETIREELAAAKDAGKPVVVSMGGMAASGGYWVSTPANYVIASPATLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S  +  +      MQ  +D  Y  F+ LV++SRN
Sbjct: 439 NTVENSLDAIGVHTDGVATSPLADVASTKALPSEVQQM-MQLSIDKGYQNFIGLVAKSRN 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
               +   ++ G +WTG +AK  GL+D +G  ++       L       ++  +    + 
Sbjct: 498 KTPVEIDRIAQGHVWTGNDAKANGLVDALGDFDDAVAKAAELAKLSK-PQLSWYQDDPSL 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQG 286
                  + +S  +   +P   +     
Sbjct: 557 LDMLFNQMQVS--VHAALPATLKAYFPA 582



 Score = 98.5 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + I   +++L +V    ++F +  +S   D       + + G + D         
Sbjct: 19  LNFVRECILNLFLVLLIVVAAGIWFQFHSASTAADTQKGALIVDLSGVVVDKPTVSNKMS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               ++++ I +   DD+ T +++ L + GG+     + I + +
Sbjct: 79  RISRQLLGAGNDPLKENSLFDIVDAIRQAKGDDNITGMVLDLRNFGGADQPSLQYIGKTL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    I    E  + A Y ++  +N I  +    V   G      Y K  +DKL +
Sbjct: 139 REFRDSGKPIFATGESYSQAQYYLASFANKIYLSPQGNVDLHGFATNSLYYKTLIDKLKI 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A       V   +  ++  ++ +R I  ++     
Sbjct: 199 SSHVFRVGTYKSAVEPFLRDDMSPAARDADGRWVGELWENYLNTLAANRQITPNQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L      T   AK   L+D +     V + L          K
Sbjct: 259 QGVLDSLKKLGGDTAQYAKDNKLVDQLASSSLVERDLVKTFGWDKEAK 306


>gi|295690720|ref|YP_003594413.1| signal peptide peptidase SppA [Caulobacter segnis ATCC 21756]
 gi|295432623|gb|ADG11795.1| signal peptide peptidase SppA, 67K type [Caulobacter segnis ATCC
           21756]
          Length = 594

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 109/288 (37%), Gaps = 18/288 (6%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED----------------SQELIERIERI 60
           L+                 P +A I   G I                  S ++ +     
Sbjct: 277 LIDFDDYASRNKPTPIKTGPAIAVIGAEGAIVTGTSGGGSPFSGESNVYSDDVAQAFRNA 336

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAI-FRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119
           + D    A++  +SSPGGS  A E I           KPV+  +   AAS GY IS  ++
Sbjct: 337 TEDKDVKAIVFRVSSPGGSDTASEQILAAMKAAKAAGKPVVVSMGTYAASGGYWISSQAD 396

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI-KSVKSSPMKAEPSPFSEVNPKAVQMM 178
            IVA  ++L GSIGV      +   L + GV   +                  P+     
Sbjct: 397 AIVAQPSTLTGSIGVYGGKFAIGDALARFGVDTKQLHVGGDYAQAFGSGDGFTPEQRAKF 456

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
              +D  Y  F+  V+E R +P D+   ++ GR+WTG +AK++GL+D +GG  +      
Sbjct: 457 AGWMDRIYAGFIIRVAEGRKLPADRVREIAKGRVWTGEQAKQLGLVDELGGFYQAVDKAK 516

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           AL       ++K  +  ++ +    K L +S     T+          
Sbjct: 517 ALAKLNGDVRLKRMDGGQSPFEALEKLLGVSETSMKTLAAAAWVLGDP 564



 Score = 76.2 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 90/275 (32%), Gaps = 27/275 (9%)

Query: 11  RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIR------------------GQIEDSQE 52
             + +  V   ++  +  +     +P  A + +                   G  +    
Sbjct: 15  LLLFVVGVPFLLIVIAAGAARPAPTPTQAVLQLDLRQGLTDQAPRTPFASLGGGGDSVMS 74

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM------ 106
           +IE + R  +DD   A++V L   G +  A + +  A +  +         H        
Sbjct: 75  IIETLRRAEKDDKVRAILVRLPEGGVAPAAADELRLAFKHFREVGGKPIYAHSQGLYPSG 134

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
             ++ Y++  +++       S   ++G+  +  + K F DK GV     +    K   +P
Sbjct: 135 MVTSTYMLGASASEFWMQPDSSFQAVGISSESMFFKRFFDKYGVKADYEQRYEYKNAVNP 194

Query: 167 F--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLI 224
           +  S+  P   +     + S Y   +   +  R     +     +   ++  EA+  GLI
Sbjct: 195 YLYSDYTPAHRESTLSWMGSVYRTALVSAAVDRKRDPLQLTRTLEDGPYSAQEAQAKGLI 254

Query: 225 DVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNY 258
           D VG   ++             +    D+      
Sbjct: 255 DKVGQVSDIQALALDKAGKGSKLIDFDDYASRNKP 289


>gi|260060602|ref|YP_003193682.1| protease IV [Robiginitalea biformata HTCC2501]
 gi|88784732|gb|EAR15901.1| protease IV [Robiginitalea biformata HTCC2501]
          Length = 584

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 125/260 (48%), Gaps = 10/260 (3%)

Query: 33  DNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                +A +  +G+I   +          + E  +++  D+   A+++ ++SPGGSA   
Sbjct: 296 TGDSRIAIVYAQGEIFYGEGGPDYIGQVRMQEVFKKVREDEDIKAVVLRINSPGGSALTS 355

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           E I+R I + +  KPV+  + ++AAS GY ++ A + IV   T++ GSIGV    P +  
Sbjct: 356 EIIWREIMETRKEKPVVVSLSDVAASGGYYMAVAGDRIVTEPTTITGSIGVFATIPNISS 415

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
             +K+G++ + V +  M  + S F  +     +++++ ++ +Y  F++ V++ R I   +
Sbjct: 416 LSEKIGINAEQVGTHDMSVDYSFFEPMGDDFREVVREGIEDTYETFLQRVADGRGISVAQ 475

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              L+ GR+W+G +A ++GL D +GG  E   +   L       +       K+     +
Sbjct: 476 ADSLAQGRVWSGTDAVRLGLADALGGMPEALDTAAELAGV-ESYRTLSLPKYKSGLERLM 534

Query: 264 KNLSISSLLEDTIPLMKQTK 283
           ++L  +        L  +  
Sbjct: 535 EDLGGAGEAAGQAALTDRLG 554



 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 95/275 (34%), Gaps = 27/275 (9%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------------- 47
           +L  +    ++  +  + V        V      V  ++    I                
Sbjct: 11  ILGTLVALGIVFVMFLIFVSLAGSEEPVRIPDDSVLELSFPYPINEYSGNDPGDPLAGLF 70

Query: 48  ---EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH 104
              +   E+ + I   + DD  + + +             AI +A+ + +     +    
Sbjct: 71  DASQGLDEITKAIRLAAGDDRISGISLGGPYLLAGITQTRAIRQALAEFRETGKFVYAYG 130

Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164
           +      Y +S  ++ +       V   G+  +  Y K F +K G+ ++ V+    K+  
Sbjct: 131 DFYMQKDYYLSSVADSVFLNPVGTVDFKGLAAEVLYFKEFQEKTGLQMEVVRHGKYKSAV 190

Query: 165 SPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGAEAKKV 221
            PF    ++    + +++++ S +      +S SR +  D+   ++DG +  T   A   
Sbjct: 191 EPFLSDSMSDDNREQLRELLASIWSSIREEISTSRGLSVDELDRIADGLLARTPERAVTT 250

Query: 222 GLIDVV---GGQEEVWQSLYALGVDQSIRKIKDWN 253
           GL+D +   G  +++       G  +   KI    
Sbjct: 251 GLVDALIYRGEYDDLLARASGRG--EDDPKIVTLQ 283


>gi|71275280|ref|ZP_00651567.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Xylella
           fastidiosa Dixon]
 gi|71900134|ref|ZP_00682275.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Xylella
           fastidiosa Ann-1]
 gi|170731283|ref|YP_001776716.1| protease IV [Xylella fastidiosa M12]
 gi|71164089|gb|EAO13804.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Xylella
           fastidiosa Dixon]
 gi|71730083|gb|EAO32173.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Xylella
           fastidiosa Ann-1]
 gi|167966076|gb|ACA13086.1| protease IV [Xylella fastidiosa M12]
          Length = 633

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 123/267 (46%), Gaps = 11/267 (4%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVS 72
           +      S     S  +A +   G+I            +     + +   +D+  A+++ 
Sbjct: 320 LSLLDAQSVPLGTSSQIAVVVAAGEIKGGDQPAGYIGGESTSMLLRKARDEDAVKAVVLR 379

Query: 73  LSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
           ++SPGG  +A E I R +  ++   KPV+  + +MAAS GY IS  ++ I A  +++ GS
Sbjct: 380 VNSPGGEVFASEQIRREVVALRKVGKPVVVSMGDMAASGGYWISMDADRIYADPSTISGS 439

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IG+    P +   LDK+GV    V ++           ++P+  Q+ Q+V+D  Y  F  
Sbjct: 440 IGIFGLVPNITRTLDKVGVHTDGVGTTRFAGALDITRALDPQVGQIFQNVIDKGYADFTT 499

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIK 250
            V+++R+    +   ++ GR+W+GA+AK+ GL+D +GG  E            +    ++
Sbjct: 500 KVAQARHRSVKEIDSIARGRVWSGAQAKERGLVDELGGVREAITDAAKRAKLGEGHYSVR 559

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIP 277
             +   + +   + N+  + +    + 
Sbjct: 560 YVDKAVSPFMQFIINMMSTRIGNWALG 586



 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 89/251 (35%), Gaps = 16/251 (6%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAAS 109
           ++LI  IE  ++D     +++ L     S YA    +  A+Q +K+    +    E    
Sbjct: 99  RDLIRVIEAAAKDKKVERVLLDLDKLQPSGYASLREVVAALQNLKDSGKQLVAFSESMTQ 158

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPF- 167
           + YL++  ++ I       V   G+     Y +  L +KLGV +   +    K+   PF 
Sbjct: 159 SQYLLAAQADEIYLDPMGSVLLEGLAHYRQYFRKGLQEKLGVDVHLFRVGEYKSAAEPFV 218

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW--------TGAEA 218
               +  A +     ++  +  ++  ++++R +       + +                A
Sbjct: 219 LDAASADAKEADLFWMNDIWQRYLADIAKARKLDSAHLNTIVERLPQDIAANHGDLAKYA 278

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIR----KIKDWNPPKNYWFCDLKNLSISSLLED 274
               L+D +  +E+V Q +   GV         +  D+    +        L  SS +  
Sbjct: 279 LAQKLVDGLKTREQVNQLMIQRGVADKKADGGFRNVDFGTYLSLLDAQSVPLGTSSQIAV 338

Query: 275 TIPLMKQTKVQ 285
            +   +     
Sbjct: 339 VVAAGEIKGGD 349


>gi|39995926|ref|NP_951877.1| signal peptide peptidase SppA, 36K type [Geobacter sulfurreducens
           PCA]
 gi|39982690|gb|AAR34150.1| signal peptide peptidase SppA, 36K type [Geobacter sulfurreducens
           PCA]
 gi|298504941|gb|ADI83664.1| signal peptide peptidase SppA, 36K type [Geobacter sulfurreducens
           KN400]
          Length = 321

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 76/282 (26%), Positives = 124/282 (43%), Gaps = 20/282 (7%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE---------------LIERIERISRDDSATALIVSLSS 75
             + +  +  + I G I D  +               + E + +  RD     LI+ ++S
Sbjct: 40  EGEGTKKILIVDISGAIGDQAKGGGLLSRGTPSTVSLVREVLLKAERDPKVAGLILRINS 99

Query: 76  PGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           PGG+  A + I   +   K R+  PV   +  + AS GY ++ A++ I A  T+L GSIG
Sbjct: 100 PGGTVTASDIIRHDLLAFKERRNLPVSACIMGIGASGGYYVATAADGITAHPTALTGSIG 159

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           VL     V+  L K+GV  K++KS   K   SPF    P+  +++Q V+D  +  FV +V
Sbjct: 160 VLLMTFNVEGLLGKVGVEEKTIKSGGKKDLLSPFRRATPEEERLVQGVIDQFHGRFVDVV 219

Query: 194 SESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
                        L L+DGRI++ A+A   GLID +G  ++V  SL     D    ++  
Sbjct: 220 QARPGNRLSRHDLLTLADGRIFSAADALAAGLIDRIGYLDDVIASLRDRIGDPDA-RVVT 278

Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
           +  P +Y        +    + D +     T       +W P
Sbjct: 279 YFRPGSYQGSIYAESAAEPSMADLLGGFDMTGGGQFMYLWRP 320


>gi|325478882|gb|EGC81992.1| signal peptide peptidase SppA, 36K type [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 327

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 125/256 (48%), Gaps = 6/256 (2%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQ--EL-IERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
              ++   +  + + G I+ +   +  +E +++   D     +I+ ++SPGGS YA E I
Sbjct: 55  KGTNSKEKIKIVDVDGVIQSNDANDFAVEELKKAKEDPLVKGVILRVNSPGGSVYASEKI 114

Query: 87  FRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
              I+ + +  KPV T + EMAAS GY IS  ++ I A+  +  GSIGV+ Q   ++   
Sbjct: 115 ANQIKALKEADKPVYTVMEEMAASGGYYISAPTDRIYASNETWTGSIGVIIQSKSLQGLF 174

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           +K G+  +++ +  MK   S   ++N       Q +VDS++  FV++V+E R +   +  
Sbjct: 175 EKYGIKEQNITTGKMKDAGSVGRDMNDDEKAYFQGLVDSAFDRFVKIVAEGRGLSEREVR 234

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK--DWNPPKNYWFCDL 263
            ++DGR++ G++A  +GL+D +G  +     + +         I+  D     N  F   
Sbjct: 235 KIADGRVYDGSQALNIGLVDKIGDLDLAISEMTSENGLNDPMVIENNDVMSSFNSLFSKA 294

Query: 264 KNLSISSLLEDTIPLM 279
            +L   S     +  M
Sbjct: 295 MDLKKESSDLAILDKM 310


>gi|325205076|gb|ADZ00530.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis M01-240355]
          Length = 328

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57
           K I      L LV L    F           N+PH A + + G+I +  ++ ++++    
Sbjct: 45  KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114
           E   ++  A A+I+  +SPGGS       F  I+++K + P   V     +M AS  Y I
Sbjct: 105 EAAYKNPQAKAIIIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I A  +S++GSIGV+         ++K+GV  +   +   K    PFS   P+ 
Sbjct: 165 AAAADKIYADPSSIIGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            ++ ++++   +  F++ V   R       +   +  GR++TGA+A KVGL+D +G    
Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGDRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280
           V + +           + D+ P  ++           + + + + +  ++
Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328


>gi|313669287|ref|YP_004049571.1| protease [Neisseria lactamica ST-640]
 gi|313006749|emb|CBN88219.1| putative protease [Neisseria lactamica 020-06]
          Length = 328

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 124/283 (43%), Gaps = 13/283 (4%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57
           K I      L LV L    F           N+PH A + + G+I +  ++ ++++    
Sbjct: 45  KNIWRAVSTLILVALIAGIFQKDESALQLVGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114
           E   ++  A A+++  +SPGGS       F  I+++K + P   V     +M AS  Y I
Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I A  +S+VGSIGV+         ++K+GV  +   +   K    PFS   P+ 
Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            ++ ++++   +  F++ V   R       +   +  GR++TGA+A+KVGL+D +G    
Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADAQKVGLVDGLGNIYS 284

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
           V + +          +  D+               +   L+  
Sbjct: 285 VARDVVKAPDLVDYTRQDDFGTLLGRRLGAELKAGVREALQAV 327


>gi|294140831|ref|YP_003556809.1| signal peptide peptidase SppA, 67K type [Shewanella violacea DSS12]
 gi|293327300|dbj|BAJ02031.1| signal peptide peptidase SppA, 67K type [Shewanella violacea DSS12]
          Length = 613

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 114/252 (45%), Gaps = 12/252 (4%)

Query: 35  SPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
              V  I  +G I            +     + +   DD+  A+++ + SPGGSA+A E 
Sbjct: 324 DDTVGIIVAKGTILNGNQPAGQIGGESTSLLLRKARFDDNVKAVVLRVDSPGGSAFASEQ 383

Query: 86  IFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           I + +  +K   KPV+  +   AAS GY IS +++ I A  T+L GSIG+       +  
Sbjct: 384 IRQEVLALKTAGKPVVVSMGSYAASGGYWISASADYIYATPTTLTGSIGIFGMITTFEDS 443

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L  LG+    V +S      S    + P    ++Q  ++  YH F+ LV+  RN+  ++ 
Sbjct: 444 LSSLGIHTDGVATSEWAG-ISVAKGLTPAIKSVIQRHIERGYHDFISLVATERNMSLEEV 502

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFCDL 263
             ++ GR+W+G +A  +GLID +G  ++       +   +    +I +       +F   
Sbjct: 503 DNIAQGRVWSGRKALDLGLIDELGDLDDAVAKAADMAGLEDFDSQIIEHELTPQEFFIQE 562

Query: 264 KNLSISSLLEDT 275
              S++  L  +
Sbjct: 563 MFSSVAVYLPQS 574


>gi|127512869|ref|YP_001094066.1| signal peptide peptidase SppA, 67K type [Shewanella loihica PV-4]
 gi|126638164|gb|ABO23807.1| signal peptide peptidase SppA, 67K type [Shewanella loihica PV-4]
          Length = 613

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 121/266 (45%), Gaps = 13/266 (4%)

Query: 36  PHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             V  I  +G I            +     + +   DD   A+++ + SPGGSA+A E I
Sbjct: 325 DAVGIIVAKGNILNGHQAAGQIGGESTSALLRKARFDDKVKAVVLRVDSPGGSAFASEQI 384

Query: 87  FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
            + +  +K   KPV+  +   AAS GY IS +++ I A  T+L GSIG+       +  L
Sbjct: 385 RQEVLALKAANKPVVVSMGTYAASGGYWISASADYIYATPTTLTGSIGIFGMMTTFEDSL 444

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            +LG+    V +S      S    ++ +  +++Q  ++  Y  F+ LVSE R +  ++  
Sbjct: 445 AELGIHTDGVSTSGW-TAFSSTQGISDELKEIIQRHIERGYQDFISLVSEERGMKPEEVD 503

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPKNYWFCDL 263
            ++ GR+W+G  A ++GL+D +G  E+       L   +    + I+    P+  +   +
Sbjct: 504 KIAQGRVWSGKRALELGLVDELGDLEQAVTKAAELAKLEKFDTKLIEQELSPQEQFIQQM 563

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289
              ++S + +         ++ G  +
Sbjct: 564 FAQAVSYMPQSLSQSSLIEQLLGEVS 589



 Score = 92.4 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 88/277 (31%), Gaps = 36/277 (12%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51
           +K+         + L  V  +              + + G + + +              
Sbjct: 23  RKVILNLFFFGFIALLFVILAGEESPTVEEGSALVLDLSGNVVEQKRQVDPIEAAMKSGK 82

Query: 52  -----------ELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRKPV 99
                      +L+  I+  + D   +AL++ +     +     ++I  A+ + K     
Sbjct: 83  GGQSDGEILLADLLNAIDNAASDKRISALVLDIGHLRWTGISKLQSIGDALTRFKASGKP 142

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
           I  +        Y ++  ++ I       V   G+     Y K  LDKL +     +   
Sbjct: 143 IIAMGNWYGQNQYFLASFADTIYLNPQGSVEIEGLSRYRQYFKSALDKLKIKAHVFRVGT 202

Query: 160 MKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL--------VLSD 209
            K+   PF   +++  A    ++++   +  F   VSE+R I  D  +         L+ 
Sbjct: 203 FKSAVEPFMRDDMSEAAKSANRELLQDIWDSFEATVSENRGIKQDDLMLSAERYLTELNK 262

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
               +   A  +G +D +   E+    +     +   
Sbjct: 263 ANGRSSEMAINLGWVDKLASAEQFRLDMVERVGEAKE 299


>gi|325135353|gb|EGC57974.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis M0579]
 gi|325203104|gb|ADY98558.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis M01-240149]
 gi|325208973|gb|ADZ04425.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis NZ-05/33]
          Length = 328

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57
           K I      L LV L    F           N+PH A + + G+I +  ++ ++++    
Sbjct: 45  KNIWRAVSTLILVALIAGIFQKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114
           E   ++  A A+I+  +SPGGS       F  I+++K + P   V     +M AS  Y I
Sbjct: 105 EAAYKNPQAKAIIIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I A  +S++GSIGV+         ++K+GV  +   +   K    PFS   P+ 
Sbjct: 165 AAAADKIYADPSSIIGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            ++ ++++   +  F++ V   R       +   +  GR++TGA+A KVGL+D +G    
Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGDRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280
           V + +           + D+ P  ++           + + + + +  ++
Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328


>gi|328873642|gb|EGG22009.1| hypothetical protein DFA_01898 [Dictyostelium fasciculatum]
          Length = 650

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 108/272 (39%), Gaps = 23/272 (8%)

Query: 27  WSSHVEDNSPHVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVS 72
              + + +    A I + G I                S+ +   +   + D +  A+++ 
Sbjct: 301 PHPYSQKSKHQFALINLEGAIYRGQSTDPMHGGPSIGSETVSLALRAATLDKNIKAIVLV 360

Query: 73  LSSPGGSAYAGEAIFRAIQ-KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
           ++SPGGS  A + I   I+   K  K V+  + + AAS GY I+C ++ IVA   ++ GS
Sbjct: 361 VNSPGGSYIASDLIHHEIELAKKAGKKVVVHMGQFAASGGYFIACNADRIVALPGTITGS 420

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVK--------SSPMKAEPSPFSEVNPKAVQMMQDVVD 183
           IGVL      KP  +K+GV+   +          +      S     N      M D +D
Sbjct: 421 IGVLAGKFNTKPMWEKIGVTYDMINLNNNDKHGDNDNSTFYSALHPYNKVQRDAMNDFLD 480

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
             Y  F   V+  R +   +   ++ GR+WTG +A    L+D +G   +       L   
Sbjct: 481 YIYGDFTSKVAAGRTLTAAQVEDVARGRVWTGNQALDRKLVDKIGSLNDAINEAKTLCGL 540

Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
           +   K++    PK      L +       E+ 
Sbjct: 541 KETDKLQIVEFPKESLLKKLLSSGSPYNSEEA 572



 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 79/205 (38%), Gaps = 8/205 (3%)

Query: 52  ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEM--- 106
           ++I  I   S D    ALI         S    + + +AI   + + K  +         
Sbjct: 83  DIINYINHASGDAKVKALICRLSDKAHLSLAMIQELRQAILNFRAKGKHTVVYSESFGEL 142

Query: 107 -AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
             +   Y ++ A N I   +   VG +       ++K  LDKLG++ +  K    K+   
Sbjct: 143 SNSIGSYYLATAFNEIYIPQCGAVGLVSFSSDQSFIKKTLDKLGITAEFFKRKEYKSAAD 202

Query: 166 P--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
           P    ++     + +  ++    +   + +++ RN+  D+ L +     ++  +A ++ L
Sbjct: 203 PLTEEKLTDSNRESLTALLGDILNQMYQGIAKERNLGMDQLLNIISNGPYSSNKAVELNL 262

Query: 224 IDVVGGQEEVWQSLYALGVDQSIRK 248
           ++      E ++ L     +   +K
Sbjct: 263 VNGTKYLNETYEHLKKKMEEDHKKK 287


>gi|262068058|ref|ZP_06027670.1| protease IV [Fusobacterium periodonticum ATCC 33693]
 gi|291378237|gb|EFE85755.1| protease IV [Fusobacterium periodonticum ATCC 33693]
          Length = 551

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 113/237 (47%), Gaps = 11/237 (4%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70
                 ++      +   +A I + G+I          +   ++E+++ +    +   L+
Sbjct: 267 FVEYISAYKRKKNKSKNTIAVINLEGEIDIRESRETVINYDNVVEKLDALEDIKNLKGLV 326

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + ++SPGGSA   E I++ ++K+    P+   + ++ AS GY I+     + A+  +L G
Sbjct: 327 LRINSPGGSALESEKIYQKLKKL--EIPIYISMGDLCASGGYYIATVGKKLFASPVTLTG 384

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+  YP     +DKL V+++             FS+++ ++ + +   ++  Y  F 
Sbjct: 385 SIGVVILYPEFSEAIDKLKVNMEGFSKGKGFDIFDVFSKLSEESKEKIVYSMNEVYSEFK 444

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
             V E+RNI  +    ++ GR+W G++AK+ GL+D +G   +   SL      +  +
Sbjct: 445 AHVMEARNINEEDLEKIAGGRVWLGSQAKENGLVDELGTLNDCIDSLAKELELKDFK 501



 Score = 69.6 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 111/283 (39%), Gaps = 16/283 (5%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDS 65
           +K K + V +SL  +  V F+    VED    V+ I+I   +     +++ +E +  D  
Sbjct: 30  RKFKNKDV-ISLKGVKTVVFNIGDLVEDYM--VSAISINKAL-SHDIVLKALENLVDDKK 85

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA- 124
              +I+ +     S    E I    +K+   K +I         +  +   A  I +   
Sbjct: 86  IEKIIIDVDEVDLSRVHIEEIKEIFKKLSVDKEIIAIGTTFDEYSYQIALLADKIYMLNT 145

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVV 182
           + S +   G  ++ PY K  L  LGV++ ++     K   E     ++  +  + + ++ 
Sbjct: 146 KQSCLYFRGYEYKEPYFKNILATLGVTVNTLHIGDYKVAGESFSHDKMTEEKKESLMNIK 205

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG--AEAKKVGLIDVVGGQEEVWQSLYAL 240
           ++ +  F+ LV E R    D T  +  G +      +AK++GLID V   EE       +
Sbjct: 206 ETLFQNFINLVKEKRK--VDITNEILSGDLIFANSEKAKELGLIDGVSTYEE-----IGV 258

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
             D+      ++           KN      LE  I + +  +
Sbjct: 259 DYDEDTVDFVEYISAYKRKKNKSKNTIAVINLEGEIDIRESRE 301


>gi|325283414|ref|YP_004255955.1| peptidase S49 [Deinococcus proteolyticus MRP]
 gi|324315223|gb|ADY26338.1| peptidase S49 [Deinococcus proteolyticus MRP]
          Length = 534

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 108/259 (41%), Gaps = 22/259 (8%)

Query: 21  TVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQELIERIERIS 61
            V+           +  VA +++ G I                     S  ++  +    
Sbjct: 244 AVLNLLLPVRASSKAGRVAVVSVEGNIVTGPSRHNPLPLPLTGGPSAGSDTVVAALRHAK 303

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
            D +  A+++ ++S GGSA A + I+R +Q   + KPV+  +   AAS GY +  A++ +
Sbjct: 304 EDRTTAAIVLYVNSGGGSALASDLIWREVQ--TSEKPVVAVMGAFAASGGYYVLAAADRV 361

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
           +A+  S+ GSIGV+   P  + F  + G++ + +              +  +    ++  
Sbjct: 362 IASPYSMTGSIGVVAGRPITEEFNRRHGLNPEQLGR-EEALMFHSSHPLTERQRDYLRRA 420

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           +  +Y  FV  V++ R +  ++   L  GRIW+GA+A + GL+D +G      Q    L 
Sbjct: 421 IAETYARFVDRVAQGRGLSTEQVDELGRGRIWSGADALERGLVDELGDLHTAVQRAKELT 480

Query: 242 VDQSIRKIKDWNPPKNYWF 260
                  + +  P      
Sbjct: 481 GLPYSAPVWNAGPKNRLPL 499



 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 93/186 (50%), Gaps = 3/186 (1%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + L ER++R++R +    ++V       SA A  AI   + ++   K V+  + ++  + 
Sbjct: 51  EALEERLDRLARAEWLHGVLVRFGELKLSAAAARAIQGMLSRLAAEKRVVAYLPQVNMTT 110

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169
               S A + +VA E++ +G  G   +  Y+  FL K G+  ++++    K+  +PFS+ 
Sbjct: 111 LLAASGA-SELVAPESAEMGLHGFGLEQLYLGDFLKKHGIGFENLRIREYKSALTPFSDS 169

Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
            ++    + +QD +DS  + +V+ V++ R +   +     +G +    +A + G++  V 
Sbjct: 170 EMDGANREQLQDYLDSCENAWVQDVAQGRGLSEAQVRGWIEGGVTGARQALEAGILTGVA 229

Query: 229 GQEEVW 234
            ++E+ 
Sbjct: 230 YEDELL 235


>gi|59802274|ref|YP_208986.1| putative protease [Neisseria gonorrhoeae FA 1090]
 gi|194099771|ref|YP_002002906.1| putative protease [Neisseria gonorrhoeae NCCP11945]
 gi|239999952|ref|ZP_04719876.1| putative protease [Neisseria gonorrhoeae 35/02]
 gi|240017669|ref|ZP_04724209.1| putative protease [Neisseria gonorrhoeae FA6140]
 gi|240081852|ref|ZP_04726395.1| putative protease [Neisseria gonorrhoeae FA19]
 gi|240114129|ref|ZP_04728619.1| putative protease [Neisseria gonorrhoeae MS11]
 gi|240116769|ref|ZP_04730831.1| putative protease [Neisseria gonorrhoeae PID18]
 gi|240118995|ref|ZP_04733057.1| putative protease [Neisseria gonorrhoeae PID1]
 gi|240122467|ref|ZP_04735423.1| putative protease [Neisseria gonorrhoeae PID332]
 gi|240126684|ref|ZP_04739570.1| putative protease [Neisseria gonorrhoeae SK-92-679]
 gi|240127179|ref|ZP_04739840.1| putative protease [Neisseria gonorrhoeae SK-93-1035]
 gi|254493478|ref|ZP_05106649.1| protease [Neisseria gonorrhoeae 1291]
 gi|260441561|ref|ZP_05795377.1| putative protease [Neisseria gonorrhoeae DGI2]
 gi|268595758|ref|ZP_06129925.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268597949|ref|ZP_06132116.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268600201|ref|ZP_06134368.1| protease [Neisseria gonorrhoeae MS11]
 gi|268602442|ref|ZP_06136609.1| protease [Neisseria gonorrhoeae PID18]
 gi|268604710|ref|ZP_06138877.1| protease [Neisseria gonorrhoeae PID1]
 gi|268681058|ref|ZP_06147920.1| protease [Neisseria gonorrhoeae PID332]
 gi|268685263|ref|ZP_06152125.1| protease [Neisseria gonorrhoeae SK-92-679]
 gi|268685537|ref|ZP_06152399.1| protease [Neisseria gonorrhoeae SK-93-1035]
 gi|291044926|ref|ZP_06570635.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293398003|ref|ZP_06642209.1| protease IV [Neisseria gonorrhoeae F62]
 gi|59719169|gb|AAW90574.1| putative protease [Neisseria gonorrhoeae FA 1090]
 gi|193935061|gb|ACF30885.1| putative protease [Neisseria gonorrhoeae NCCP11945]
 gi|226512518|gb|EEH61863.1| protease [Neisseria gonorrhoeae 1291]
 gi|268549147|gb|EEZ44565.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268551737|gb|EEZ46756.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268584332|gb|EEZ49008.1| protease [Neisseria gonorrhoeae MS11]
 gi|268586573|gb|EEZ51249.1| protease [Neisseria gonorrhoeae PID18]
 gi|268588841|gb|EEZ53517.1| protease [Neisseria gonorrhoeae PID1]
 gi|268621342|gb|EEZ53742.1| protease [Neisseria gonorrhoeae PID332]
 gi|268625547|gb|EEZ57947.1| protease [Neisseria gonorrhoeae SK-92-679]
 gi|268625821|gb|EEZ58221.1| protease [Neisseria gonorrhoeae SK-93-1035]
 gi|291011820|gb|EFE03816.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291611949|gb|EFF41018.1| protease IV [Neisseria gonorrhoeae F62]
 gi|317165248|gb|ADV08789.1| putative protease [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 328

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57
           K I      L LV L    F           N+PH A + + G+I +  ++ ++++    
Sbjct: 45  KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGKIGNGVEDQVKKLKDGM 104

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114
           E   ++  A A+++  +SPGGS       F  I+++K + P   V     +M AS  Y I
Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I A  +S+VGSIGV+         ++K+GV  +   +   K    PFS   P+ 
Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            ++ ++++   +  F++ V   R       +   +  GR++TGA+A KVGL+D +G    
Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280
           V + +           + D+ P  ++           + + + + +  ++
Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVSEALQAVR 328


>gi|238020513|ref|ZP_04600939.1| hypothetical protein GCWU000324_00395 [Kingella oralis ATCC 51147]
 gi|237867493|gb|EEP68499.1| hypothetical protein GCWU000324_00395 [Kingella oralis ATCC 51147]
          Length = 333

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/303 (24%), Positives = 130/303 (42%), Gaps = 35/303 (11%)

Query: 6   KKIKTRYVMLSLVTLTVVY---------FSWSSHVEDNSPHVARIAIRGQIEDSQE---- 52
           + I     +L  + +              S         PH A + ++G I  + E    
Sbjct: 42  RNIWRGIAVLVFLAIVAGSRTGNGNHPNVSAGKFTNMQKPHTAVVNLKGVIGGNDEHDQV 101

Query: 53  --LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMA 107
             L E +E   ++++  A+++  +SPGGS       F  I+++       PV     ++ 
Sbjct: 102 KILREGMEAAYKNNNVKAILLRANSPGGSPVVSNIAFEEIRRMKREHADIPVYVVAEDVC 161

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           AS  Y I+ A++ I A  +SL+GSIGV+     V   + K+GV  +   +   K    PF
Sbjct: 162 ASGCYYIAAAADKIYADPSSLMGSIGVIGSSFDVTELMQKIGVKRRVRIAGDNKGMGDPF 221

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLID 225
           +  +P+   + Q ++D  +  F++ V E RN   ++     L  GR++TG EAKK GL+D
Sbjct: 222 TPESPEQQAIFQQMLDQVHAEFIKSVREGRNGKLNEKAYPDLFSGRVFTGIEAKKAGLVD 281

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
            +G    V + +           + D+ P  N          ++SLL+  +    Q K++
Sbjct: 282 DLGNIYSVARDVVK------APDLVDYTPENN---------DLASLLQRGLGARVQLKLE 326

Query: 286 GLW 288
              
Sbjct: 327 EWL 329


>gi|219872141|ref|YP_002476516.1| protease IV, signal peptide peptidase [Haemophilus parasuis SH0165]
 gi|219692345|gb|ACL33568.1| protease IV, signal peptide peptidase [Haemophilus parasuis SH0165]
          Length = 621

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/269 (24%), Positives = 128/269 (47%), Gaps = 13/269 (4%)

Query: 18  VTLTVVYFSWSSHVED-NSPHVARIAIRGQIE---------DSQELIERIERISRDDSAT 67
           +       S S          +A + + G I           S  +++ + +   DD   
Sbjct: 306 IDFFDYSLSLSDRFNVVGKDKIAIVNVEGAIVLGESDDEVAGSDTIVKLLRKAREDDDVR 365

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAET 126
            +++ ++SPGGSA A E I + ++ ++   KPV+  +  MAAS GY I+  S+ I+A+ T
Sbjct: 366 GVVLRINSPGGSAMASELIRQEVEDLQQAGKPVVASMGGMAASGGYWIAATSDKIIASPT 425

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           +L GSIG+       +    KLGV+   V +SP   + +    ++ +  +++Q  +++ Y
Sbjct: 426 TLTGSIGIFALAVSFEKTAKKLGVNEDGVSTSPFAQQTAL-KPLSKEQSELIQISIENGY 484

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
             F+ LVS+ R +       ++ G++W G  A + GL+D +G  ++ + +L  L  ++  
Sbjct: 485 GRFLELVSKGRKMSKGDVDKVAQGQVWLGESAFEKGLVDELGDFDDAYHALTILINEKRK 544

Query: 247 RKIK-DWNPPKNYWFCDLKNLSISSLLED 274
            K + +       W  D  +  IS ++ D
Sbjct: 545 AKGETEIERFSTQWLIDESDDLISQVMRD 573


>gi|34540445|ref|NP_904924.1| signal peptide peptidase SppA, 67K type [Porphyromonas gingivalis
           W83]
 gi|34396758|gb|AAQ65823.1| signal peptide peptidase SppA, 67K type [Porphyromonas gingivalis
           W83]
          Length = 595

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 74/281 (26%), Positives = 140/281 (49%), Gaps = 16/281 (5%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------------SQELIERIERI 60
           L  V+L+ V  +     +     +A +   G+I +              +QEL + I+  
Sbjct: 286 LRFVSLSQV-LANGPMNKTKGSRIAVLFAEGEITEEIIKKPFDTDGSSITQELAKEIKAA 344

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
           + DD   A+++ ++SPGGSA+  E I++ +  +K +KP++  + ++AAS GY I+CA+N 
Sbjct: 345 ADDDDIKAVVLRVNSPGGSAFTSEQIWKQVADLKAKKPIVVSMGDVAASGGYYIACAANS 404

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           IVA  T+L GSIG+   +P       K+GV++  V++S      + F+ +  +   ++Q 
Sbjct: 405 IVAEHTTLTGSIGIFGMFPNFAGVAKKIGVNMDVVQTSKYADLGNTFAPMTVEDRALIQR 464

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
            ++  Y  F+  VSE RN    +   ++ GR+W G +A  +GL+D +GG +   +    L
Sbjct: 465 YIEQGYDLFLTRVSEGRNRTKAQIDSIAQGRVWLGDKALALGLVDELGGLDTAIKRAAKL 524

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
                   I ++   K  +F +L + S + +    +  +  
Sbjct: 525 AQLGGNYSI-EYGKTKRNFFEELLSSSAADMKSAILSTILS 564



 Score = 94.3 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 85/201 (42%), Gaps = 4/201 (1%)

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
           +E I +   + + T + + L +      + E + RA+Q  K     +    +     GY 
Sbjct: 87  VEAIGQAKNNPNITGIFLDLDNLSVGMASAEELRRALQDFKMSGKFVVSYADRYTQKGYY 146

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVN 171
           +S  ++ +      ++G IG+  Q  + K  LDK GV ++  K    KA   PF    ++
Sbjct: 147 LSSIADKLYLNPKGMLGLIGIATQTMFYKDALDKFGVKMEIFKVGTYKAAVEPFMLNRMS 206

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIW-TGAEAKKVGLIDVVGG 229
               + +   ++  +      ++ESR    D   + +D G ++    +A ++ L+D +  
Sbjct: 207 DANREQITTYINGLWDKITSDIAESRKTAMDSVKMFADKGEMFGLAEKAVEMKLVDELAY 266

Query: 230 QEEVWQSLYALGVDQSIRKIK 250
           + +V + L  +       +++
Sbjct: 267 RTDVEKELKKMSQRGEKDELR 287


>gi|86606131|ref|YP_474894.1| signal peptide peptidase SppA, 36K type [Synechococcus sp.
           JA-3-3Ab]
 gi|86554673|gb|ABC99631.1| signal peptide peptidase SppA, 36K type [Synechococcus sp.
           JA-3-3Ab]
          Length = 346

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 139/330 (42%), Gaps = 44/330 (13%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNS---------PHVARIAIRGQIEDSQ----- 51
           + +    +++ L+   +     ++                 +  + I G I   +     
Sbjct: 9   RLLAASLLVVCLIAAVIGGTRPAAESVRGGVGLEAPRGANRIEVVTIEGTIGGPRGSTLV 68

Query: 52  ----ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEM 106
                 ++++     D +  A+++ ++SPGG+  + + ++RA+  ++   KPVI  + ++
Sbjct: 69  GLPTSPLDQLREAVEDRAVKAVLLRINSPGGAVGSSQELYRAVTALREAGKPVIAVMEDV 128

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           AAS GY ++ A++ I A   +L GSIGV+         LD  G+  ++ K+   K   SP
Sbjct: 129 AASGGYYVASAADKIYANPGTLTGSIGVIISGLNFGKLLDNYGIEPQTFKTGEYKDILSP 188

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK---------------------TL 205
           F    P+  +++Q++V+ +   FVR V+  R    DK                       
Sbjct: 189 FRAATPQEQRLLQELVEDTLDQFVRDVARGRQRLPDKGAEKVLDAEMIARRQSLDEARVR 248

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD--- 262
            L+DGRI+TGA+A ++GL+D +GG  E  + L  +  D S+      +P +         
Sbjct: 249 QLADGRIFTGAQAVELGLVDALGGYAEAVEDLRRMTGDPSLSPATARDPFQRALQRLLSQ 308

Query: 263 -LKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
            L     +      +   +   +  +  +W
Sbjct: 309 GLPPQGQNLWPARLLGSHEVAGIPEVPLLW 338


>gi|282896623|ref|ZP_06304638.1| Peptidase S49, SppA [Raphidiopsis brookii D9]
 gi|281198493|gb|EFA73379.1| Peptidase S49, SppA [Raphidiopsis brookii D9]
          Length = 273

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 126/260 (48%), Gaps = 5/260 (1%)

Query: 36  PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
             +ARI I G I  S  + ++E I+ +       AL++ + SPGG+    + I+ A++++
Sbjct: 11  KQIARIEITGAIASSTRKRVLEAIKTVEE-RKFPALLLRIDSPGGTVGDSQEIYGALKEL 69

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
             +  ++     ++AS G  I   +  I+A   ++ GSIGV+ +   ++  L+K+GVS K
Sbjct: 70  GKKTKIVASFGNISASGGVYIGMGAKHIMANPGTITGSIGVILRGNNLERLLEKVGVSFK 129

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
            +KS P K   S   E+      ++Q+++D SY  F++ V+++R +P +     +DGRI+
Sbjct: 130 VIKSGPYKDILSFDRELTQPEENILQELIDVSYQQFIQTVAQARALPIETVKTFADGRIF 189

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI--SSL 271
           TG +A  +G++D +G +E+  +    L      +        +      +   S    S 
Sbjct: 190 TGEQALNLGVVDRLGTEEDARRWTAELVGLDPQKTPCYTLEERKPLLSRVLPGSRYPKSS 249

Query: 272 LEDTIPLMKQTKVQGLWAVW 291
           +   I  ++         +W
Sbjct: 250 IRSGIDWLEFEMSTSGLPLW 269


>gi|30249027|ref|NP_841097.1| U7 family peptidase [Nitrosomonas europaea ATCC 19718]
 gi|30138644|emb|CAD84935.1| Peptidase family U7 [Nitrosomonas europaea ATCC 19718]
          Length = 317

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 114/249 (45%), Gaps = 11/249 (4%)

Query: 8   IKTRYVMLSLVTLTVV---YFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIER 59
           I  R +  S + + +     +  +        H A + +RG+I      +++ +   +++
Sbjct: 36  IFFRLLTFSYLFVLLFWGLGWLDTEVAGGTGKHTALVDLRGEIAPDGLNNAENINNGLKK 95

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISC 116
              D +   +I+ ++SPGGS     +I   I+++       P+   V ++ AS GY ++ 
Sbjct: 96  AFEDRNTAGVILRINSPGGSPVQAGSINDEIRRLRIRYPDIPLYAVVEDICASGGYYVAV 155

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
           A++ I   + S++GSIGVL         L+KLGV  + + +   K    PFS  +P   +
Sbjct: 156 AADKIFVDKASVMGSIGVLMDGFGFTGTLEKLGVERRLLTAGENKGFLDPFSPSDPAQRE 215

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
             + ++   +  F+++V + R         +  G +WTGA++ ++GL D +G  + V + 
Sbjct: 216 HAKKILAEIHQQFIQVVQDGRGDRLKDNPEVFSGMVWTGAKSVELGLADALGNADYVARE 275

Query: 237 LYALGVDQS 245
           +        
Sbjct: 276 VIQAERIVD 284


>gi|213417443|ref|ZP_03350585.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 543

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 108/226 (47%), Gaps = 11/226 (4%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +A I   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  L  +GV    V +SP+    S    ++P+  QMMQ  ++  Y  F+ LV+++R 
Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
              ++   ++ G +WTG +AK  GL+D +G  ++       L   +
Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKLK 543



 Score = 99.3 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +       S+ E  +     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90
                               +++  I +   D + T +++ L +  G+       I +A+
Sbjct: 79  ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  VS +R I   +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             + DG       T   A    L+D +    +V ++L     
Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300


>gi|188994544|ref|YP_001928796.1| signal peptide peptidase SppA 67K type [Porphyromonas gingivalis
           ATCC 33277]
 gi|188594224|dbj|BAG33199.1| signal peptide peptidase SppA 67K type [Porphyromonas gingivalis
           ATCC 33277]
          Length = 595

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 74/281 (26%), Positives = 141/281 (50%), Gaps = 16/281 (5%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------------SQELIERIERI 60
           L  V+L+ V  +     +     +A +   G+I +              +QEL + I+  
Sbjct: 286 LRFVSLSQV-LANGPMNKTKGSRIAVLFAEGEITEEIIKKPFDTDGSSITQELAKEIKAA 344

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
           + DD   A+++ ++SPGGSA+  E I++ +  +K +KP++  + ++AAS GY I+CA+N 
Sbjct: 345 ADDDDIKAVVLRVNSPGGSAFTSEQIWKQVADLKAKKPIVVSMGDVAASGGYYIACAANS 404

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           IVA  T+L GSIG+   +P       K+GV++  V++S      + F+ +  +   ++Q 
Sbjct: 405 IVAEHTTLTGSIGIFGMFPNFAGVAKKIGVNMDVVQTSKYADLGNTFAPMTVEDRALIQR 464

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
            ++  Y  F+  VSE RN    +   ++ GR+W G +A  +GL+D +GG +   +    L
Sbjct: 465 YIEQGYDLFLTRVSEGRNRTKAQIDSIAQGRVWLGDKALALGLVDELGGLDTAIKRAAKL 524

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
                   I ++   K  +F +L + S + +    + ++  
Sbjct: 525 AQLGGNYSI-EYGKTKRNFFEELLSSSAADMKSAILSIILS 564



 Score = 93.5 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 85/201 (42%), Gaps = 4/201 (1%)

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
           +E I +   + + T + + L +      + E + RA+Q  K     +    +     GY 
Sbjct: 87  VEAIGQAKNNPNITGIFLDLDNLSVGMASAEELRRALQDFKMSGKFVVSYADRYTQKGYY 146

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVN 171
           ++  ++ +      ++G IG+  Q  + K  LDK GV ++  K    KA   PF    ++
Sbjct: 147 LASIADKLYLNPKGMLGLIGIATQTMFYKDALDKFGVKMEIFKVGTYKAAVEPFMLNGMS 206

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIW-TGAEAKKVGLIDVVGG 229
               + +   ++  +      ++ESR    D   + +D G ++    +A ++ L+D +  
Sbjct: 207 DANREQITTYINGLWDKITSDIAESRKTAMDSVKMFADKGEMFGLAEKAVEMKLVDELAY 266

Query: 230 QEEVWQSLYALGVDQSIRKIK 250
           + +V + L  +       +++
Sbjct: 267 RTDVEKELKKMSQRGEKDELR 287


>gi|260435894|ref|ZP_05789864.1| signal peptide peptidase SppA, 36K type [Synechococcus sp. WH 8109]
 gi|260413768|gb|EEX07064.1| signal peptide peptidase SppA, 36K type [Synechococcus sp. WH 8109]
          Length = 275

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/257 (23%), Positives = 123/257 (47%), Gaps = 6/257 (2%)

Query: 41  IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK- 97
           I + G I     + +++ +  + R +   AL++ + SPGG+    + I  A+ +++ +  
Sbjct: 21  IVVDGPITGDTRKRVLKALREVKRRE-FPALLLRIDSPGGTVGDSQEIHAALLRLREQGC 79

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
            V+     ++AS G  I  A+  IVA   ++ GSIGV+ +   +    +K+G+   +VKS
Sbjct: 80  RVVASFGNISASGGVYIGVAAEKIVANPGTITGSIGVILRGNDLSRVFEKIGIRFDTVKS 139

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
            P K   SP   ++     ++Q+++DSSY  FV +V+  RN+  +     +DGR+++G +
Sbjct: 140 GPFKDILSPDRPLSDAERALLQELIDSSYGQFVGVVARGRNLELETVKCFADGRVFSGEQ 199

Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
           A+ +GL+D +G ++   +    L        +       +      L    +   L+  +
Sbjct: 200 AQALGLVDELGDEDHARRLAAQLADLDADDIRPVTLGKQRRKLSGLLPGSQLLHQLQQRL 259

Query: 277 PLMKQTKVQGLWAVWNP 293
            +      Q LW ++ P
Sbjct: 260 SIELMGSGQVLW-LYRP 275


>gi|294785545|ref|ZP_06750833.1| protease IV [Fusobacterium sp. 3_1_27]
 gi|294487259|gb|EFG34621.1| protease IV [Fusobacterium sp. 3_1_27]
          Length = 551

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 121/273 (44%), Gaps = 13/273 (4%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70
                 ++      +   +A I + G+I          +   ++E+++ +    +   L+
Sbjct: 267 FLEYVSAYKRKKNKSKNTIAVINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLV 326

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + ++SPGGSA   E I++ ++K+    P+   + ++ AS GY I+     + A   +L G
Sbjct: 327 LRINSPGGSALESEKIYQKLKKL--EVPIYISMGDLCASGGYYIATVGKKLFANPVTLTG 384

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+  YP     ++KL V+++             FS+++ ++ + +   ++  Y  F 
Sbjct: 385 SIGVVVLYPEFTETINKLKVNMEGFSKGKGFDIFDVFSKLSEESKEKIIYSMNEVYSEFK 444

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
             V ++RNI  +    ++ GR+W G +AK+ GL+D +G   +   SL      +  +   
Sbjct: 445 EHVIQARNISEEDLEKIAGGRVWLGNQAKENGLVDELGSLNDCIDSLAKDLELKDFK--L 502

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
            +   +      +  +    +  D I  ++  K
Sbjct: 503 TYIRGRKSIMEIVSAMKPQFIKSDIIGKIEMLK 535



 Score = 54.6 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/286 (19%), Positives = 115/286 (40%), Gaps = 16/286 (5%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
           F+L K K +  + SL  +  V F+ +  VED    ++ I++   +   + L++ +E ++ 
Sbjct: 27  FILGKFKNKDKV-SLKGVKTVVFNLNELVEDYM--ISTISVNKAL-SHEALLKALEHLAD 82

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           D     +I+ +     S    E I    +K+   K +I         +  +   A+ I +
Sbjct: 83  DKKIEKIIIDIDEIDLSRVHIEEIKEIFEKLSVDKEIIAIGTTFDEYSYQVALLANKIYM 142

Query: 123 AA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQ 179
              + S +   G  ++ PY K  L  LGV++ ++     K   E     +++ +  + + 
Sbjct: 143 LNTKQSCLYFRGYEYKEPYFKNILATLGVTVNTLHIGDYKVAGESFSNDKMSEEKKESLI 202

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG--AEAKKVGLIDVVGGQEEVWQSL 237
           ++ ++ +  F+ LV E R    D T  +  G +      +A ++GLID +   EE     
Sbjct: 203 NIKETLFQNFINLVKEKRK--VDITNEILSGDLIFANSEKAIQLGLIDGLSTYEE----- 255

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
             +  ++      ++           KN      LE  I   +  +
Sbjct: 256 IGIDYNEDTVDFLEYVSAYKRKKNKSKNTIAVINLEGEIDTRESKE 301


>gi|237741816|ref|ZP_04572297.1| protease IV [Fusobacterium sp. 4_1_13]
 gi|229429464|gb|EEO39676.1| protease IV [Fusobacterium sp. 4_1_13]
          Length = 551

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 122/273 (44%), Gaps = 13/273 (4%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70
           +     ++      +   +A I + G+I          +   ++E+++ +    +   L+
Sbjct: 267 ILEYVSAYKRKKNKSKNTIAVINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLV 326

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + ++SPGGSA   E I++ ++K+    P+   + ++ AS GY I+     + A   +L G
Sbjct: 327 LRINSPGGSALESEKIYQKLKKL--EVPIYISMGDLCASGGYYIATVGKKLFANPVTLTG 384

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+  YP     ++KL V+++             FS+++ ++ + +   ++  Y  F 
Sbjct: 385 SIGVVVLYPEFTETINKLKVNMEGFSKGKGFDIFDVFSKLSEESKEKIIYSMNEVYSEFK 444

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
             V ++RNI  +    ++ GR+W G +AK+ GL+D +G   +   SL      +  +   
Sbjct: 445 EHVIQARNISEEDLEKIAGGRVWLGNQAKENGLVDELGSLNDCIDSLAKDLELKDFK--L 502

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
            +   +      +  +    +  D I  ++  K
Sbjct: 503 TYIRGRKSIMEIVSAMKPQFIKSDIIEKIEMLK 535



 Score = 54.6 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 93/238 (39%), Gaps = 12/238 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + L++ +E ++ D     +I+ +     S    E I    +K+   K +I         +
Sbjct: 71  EALLKALEHLADDKKIEKIIIDIDEIDLSRVHIEEIKEIFEKLSVDKEIIAIGTTFDEYS 130

Query: 111 GYLISCASNIIVAA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPF 167
             +   A+ I +   + S +   G  ++ PY K  L  LGV++ ++     K   E    
Sbjct: 131 YQVALLANKIYMLNTKQSCLYFRGYEYKEPYFKNILATLGVTVNTLHIGDYKVSGESFSN 190

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG--AEAKKVGLID 225
            +++ +  + + ++ ++ +  F+ LV E R    D T  +  G +      +A ++GLID
Sbjct: 191 DKMSEEKKESLINIKETLFQNFINLVKEKRK--VDITNEILSGDLIFANSEKAIQLGLID 248

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
            +   EE       +  ++    I ++           KN      LE  I   +  +
Sbjct: 249 GLSTYEE-----IGIDYNEDTVDILEYVSAYKRKKNKSKNTIAVINLEGEIDTRESKE 301


>gi|33152022|ref|NP_873375.1| protease IV, signal peptide peptidase [Haemophilus ducreyi 35000HP]
 gi|33148244|gb|AAP95764.1| protease IV, signal peptide peptidase [Haemophilus ducreyi 35000HP]
          Length = 618

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 74/286 (25%), Positives = 136/286 (47%), Gaps = 18/286 (6%)

Query: 18  VTLTVVYFSWSSHVEDNSPH-VARIAIRGQI---------EDSQELIERIERISRDDSAT 67
           +       + +     N+ H +A I + G+I           S+ + E + +   D++  
Sbjct: 303 INYADYALNLTDRFAVNAEHKIAVINVEGEIISGKSKERSAGSETISELLRQAREDNNVD 362

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAET 126
            +I+ ++SPGGS  A E I + +Q ++   KPV+T +  +AAS GY IS  S+ I+A+  
Sbjct: 363 GVILRVNSPGGSVVASEIILQELQSIQQAGKPVVTSMGGLAASGGYWISATSDKIIASPN 422

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           ++ GSIG+       +     LG+S   V +SP+    S    ++ +  +++Q  +++ Y
Sbjct: 423 TITGSIGIFGLAMTFEKTAKHLGISEDGVATSPLAKTSSLQH-LSNEHAELIQINIENGY 481

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
             F+ LVS  RN+   +   ++ G++W+G +A K GL+D +G     +  L  L   +  
Sbjct: 482 DAFLDLVSRGRNMSKAEVDKVAQGQVWSGEDALKHGLVDQLGDFHTAYDVLTDLINQKRK 541

Query: 247 RKIK-DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
            K + +       WF +      SSLL++        K +   AVW
Sbjct: 542 AKGENEIKHFTAQWFIESDKGLFSSLLKNI-----GFKAKSTLAVW 582



 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 109/283 (38%), Gaps = 40/283 (14%)

Query: 4   VLKKIKTRYVMLSLV-----TLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQE----- 52
           V + I   + +L L+        +V  S ++  ++ +  VA R+ + G + D+ +     
Sbjct: 15  VRECIINLFFILFLLTGFASIAFLVNGSDTNKSKEPNEKVALRLNLSGYLTDNHDDFAHR 74

Query: 53  ------------------LIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKV 93
                             ++  I + ++D + T +++ LS   GS ++    I   ++  
Sbjct: 75  LIQSELTNDESLKASTFDVVRAIGKAAKDPNITGIVLDLSKFEGSDHSSLSFIGSELKAF 134

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  + E  + + Y ++  ++ I   +   +   G+ F   Y K  LDK+     
Sbjct: 135 KTSGKPVIAIGENYSQSQYYLASFADKIYLNKAGSINLQGLNFSSLYFKALLDKIDAVPH 194

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT------- 204
             +    K+   PF  ++++ +A Q  Q +++S +H F   ++E+R I  D+        
Sbjct: 195 IFRVGTYKSAVEPFLRNDMSDEAKQNAQTLLNSIWHQFRTDIAENRMIAVDQVLPEPKSL 254

Query: 205 -LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
                         A    L+  +G + E+ Q+L         
Sbjct: 255 IEKYKAVNANDAQYALNQKLVTDIGSKAEIEQALIEQFGKNEK 297


>gi|288803512|ref|ZP_06408943.1| signal peptide peptidase SppA, 67K type [Prevotella melaninogenica
           D18]
 gi|288333935|gb|EFC72379.1| signal peptide peptidase SppA, 67K type [Prevotella melaninogenica
           D18]
          Length = 592

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 131/288 (45%), Gaps = 16/288 (5%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------------SQELIERIERISRD 63
           VT+  +  +   +  D    VA     G I D              +Q + + +E++++D
Sbjct: 286 VTIADMVNTEDKNQGDKDNEVAVYYAYGDIVDGVVGGLFSQDHQIDAQVVCKDLEKLAKD 345

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
               A++V ++S GG AYA E I+  I ++K  KPV+  +  MAAS GY +S  +N IVA
Sbjct: 346 KDVKAVVVRVNSGGGDAYASEQIWHQIMELKKLKPVVVSMGGMAASGGYYMSAPANWIVA 405

Query: 124 AETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
             T++ GSIG+   +  V   L +KLG+    VK++      +       + +  +   +
Sbjct: 406 EPTTITGSIGIFGMFADVSGLLREKLGLKFDEVKTNKYADFGTRARPFTEEEMSYLSQYI 465

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           +  Y  F   V+E R +  ++   ++ G ++TG +A+K+GL+D +GG +        L  
Sbjct: 466 NRGYKLFRHRVAEGRKMTEEQVEKVAQGHVFTGQDAQKIGLVDQLGGLDVAVAKAAQLAK 525

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
             +  +   +    N+    ++  + ++ L   + +      +    +
Sbjct: 526 LPN-YRTCAYPKEPNFLEQMVEQTNPNNYLSQQLRVNLGDYYEPFKLL 572



 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 97/260 (37%), Gaps = 24/260 (9%)

Query: 14  MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQELI 54
           + +L T+  +  S  +  E     V  + + GQ+                       +++
Sbjct: 24  LFALFTIAGMIASQDTTKEPEDNSVLVLNLSGQMSERSENNFLSQLQGSQINSLGLDDML 83

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
           E I +   +D    + +   +    +YA  +A+ +A+   K  +  I    +      Y 
Sbjct: 84  EGIRKAKDNDKIKGIYIEAGAFASDSYASMQALRKALLDFKKSRKWIIAYADTYTQGTYY 143

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVN 171
           +S  ++ +       +   G+  +  ++K  L K GV ++ VK    K+    F   +++
Sbjct: 144 LSSVADKVYLNPQGQIDWHGLASKPVFIKDLLAKFGVKMQVVKVGAYKSATEMFTGDKMS 203

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG--AEAKKVGLIDVVGG 229
               +     ++S +    + V  SR++   +    +D  I      E  K+ L+D +  
Sbjct: 204 DANREQTSAYLNSIWGNITKEVGASRSLSVAQLNAYADSMITFADPQEYVKLKLVDGLVY 263

Query: 230 QEEVWQSLYALGVDQSIRKI 249
            +++ + +      ++ + I
Sbjct: 264 TDQIKEIVKKQLGIETDKDI 283


>gi|167753823|ref|ZP_02425950.1| hypothetical protein ALIPUT_02108 [Alistipes putredinis DSM 17216]
 gi|167658448|gb|EDS02578.1| hypothetical protein ALIPUT_02108 [Alistipes putredinis DSM 17216]
          Length = 594

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/265 (25%), Positives = 119/265 (44%), Gaps = 10/265 (3%)

Query: 15  LSLVTLTVVYFSWSSHVED-NSPHVARIAIRGQIEDSQ---------ELIERIERISRDD 64
              VTL       ++ +++ +S  +A +   G I D +          L  ++ ++ R+D
Sbjct: 289 FEFVTLGQYVSQLNADLKNISSSQIAIVYADGAIVDGEGYGADIYGNTLAAKLAKVRRND 348

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
              A+++ ++SPGGSA A + I+R ++ ++ +KPVI  +   AAS GY ISC ++ IVA 
Sbjct: 349 DVKAVVLRVNSPGGSALASDVIWREVELLREKKPVIVSMGSYAASGGYYISCGADAIVAD 408

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
           +T+L GSIGV   +  ++  L            +   A+      +       +   VD 
Sbjct: 409 KTTLTGSIGVFGMFLRLEDALKNKLGITFDAVRTNTSADMGVMRPLTGTERAAIMRSVDE 468

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            Y  F   V+E RN+P +K L ++ GR+W+G +A  +GL+D  GG +             
Sbjct: 469 VYETFTSYVAEGRNLPLEKVLDIAGGRVWSGTDALALGLVDTNGGLKTAIAIAADKAELG 528

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSIS 269
              +I +       +          
Sbjct: 529 DKFRIVEMTEAPTGFGAFFSGFMAK 553



 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 89/244 (36%), Gaps = 16/244 (6%)

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAG---EAIFRAIQKVKNRKPVITEVHEMAASA 110
           +  IE    D     + +  +   G        E +  A+Q  +     I   +E     
Sbjct: 87  LRAIETAKNDPRIQGIYLRPNG--GGVATYAILEELREALQDFRQGGKFIIAYNETYGQG 144

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK----SSPMKAEPSP 166
           GY ++  ++ I       +   GV     + K   DKL +  +  +          EP  
Sbjct: 145 GYYLASVADKIYLEPHGGMQWTGVSSTLMFYKGLFDKLDIQAEIFRPTACRYKSAVEPYF 204

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLID 225
            S+++    + MQ +VDS ++     V+ESR I       L+DG  +    EA   G++D
Sbjct: 205 LSKMSNANREQMQLLVDSYWNVMAEAVAESRGIELSTLNRLADGLEVSLAQEALDHGMVD 264

Query: 226 VVGG---QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282
            +      ++V++   A+  +    +        +    DLKN+S S +    I      
Sbjct: 265 GLLFEDQMDDVFREYGAVAKNDGQFEFVTLGQYVSQLNADLKNISSSQI---AIVYADGA 321

Query: 283 KVQG 286
            V G
Sbjct: 322 IVDG 325


>gi|293557142|ref|ZP_06675696.1| putative signal peptide peptidase [Enterococcus faecium E1039]
 gi|291600711|gb|EFF31009.1| putative signal peptide peptidase [Enterococcus faecium E1039]
          Length = 341

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/276 (23%), Positives = 129/276 (46%), Gaps = 21/276 (7%)

Query: 30  HVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSP 76
              D++  + ++ + G I                +  +E+++ +  D +   + + ++SP
Sbjct: 53  EEGDSTQKIVKLTVDGTIAAGGSSGLFASEGYNHENFMEQLKAVEEDPTVKGIFLEVNSP 112

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG  Y    I + +  ++     P+   +  MAAS GY IS  ++ I A E ++ GSIGV
Sbjct: 113 GGGVYESAEIAKKLDTIRKEHDIPMYVSMKNMAASGGYYISAQADKIFATEETVTGSIGV 172

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +         L+KLGV   +VKS  +K   S       +   ++Q  +DS+Y  FVR+VS
Sbjct: 173 IMSGLNYSGLLEKLGVEDTTVKSGALKDMGSGTRPETKEEEAVLQAYIDSAYQRFVRIVS 232

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           E RN   +    ++DGRI+ G +AK+VGL+D +G  E+  Q++      +   ++ +++ 
Sbjct: 233 EGRNKSEEAVKKIADGRIYDGVQAKEVGLVDELGFPEDALQAMRKEQKLEDA-ELVEYSS 291

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
             + +        ++         +K ++   + ++
Sbjct: 292 TSSGFASTWLGSKLA-----EFQGLKSSETSQILSI 322


>gi|295698349|ref|YP_003603004.1| signal peptide peptidase SppA, 67K type [Candidatus Riesia
           pediculicola USDA]
 gi|291157055|gb|ADD79500.1| signal peptide peptidase SppA, 67K type [Candidatus Riesia
           pediculicola USDA]
          Length = 634

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 131/257 (50%), Gaps = 16/257 (6%)

Query: 37  HVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           ++A I ++G I              +S+ ++++I +   D +  +LI+ ++SPGG+    
Sbjct: 339 NIAVIFVQGMISGGNEENYENSSIANSENIVKKIRQAESDPNIRSLILRINSPGGTVSDS 398

Query: 84  EAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I  A++  + N+K V+  +  MA S GY IS  S+ I+A +T++ GSIGV       +
Sbjct: 399 EKIRNALKSFRKNKKFVVVSMGGMATSGGYWISTESDRIIADQTTITGSIGVFGVVNTFE 458

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+ +G+    + ++P+   P  ++ +NP   ++++  VD +Y  F++ VS SR     
Sbjct: 459 SSLEDIGIRCDGISTTPLSQGPIEYTGINPYLSEILKISVDHNYEKFLKYVSLSRKKNIQ 518

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               +++GRIW G+EA KVGLID +G  ++  ++   +   +      +W         +
Sbjct: 519 DVRTIANGRIWIGSEAFKVGLIDQLGDFDDAIEAAMKISNIE--HPSLEWMFSDTSLMEN 576

Query: 263 LKNLSISSLLEDTIPLM 279
           L +L  S++    I  +
Sbjct: 577 LIDLFSSNIKNLFISTI 593



 Score = 61.9 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 94/295 (31%), Gaps = 47/295 (15%)

Query: 39  ARIAIRGQIED--------------------SQELIER---------IERISRDDSATAL 69
             + + G I D                      E+I +         I   ++D     +
Sbjct: 59  LLLDLNGVILDHVPSESFLTSNNFNQKLFFSQDEIIRKNSLFEIIHSIREAAKDRKIKGM 118

Query: 70  IVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           ++ L     +       I + +++ K     I  + E  +   Y +S  ++ I  +    
Sbjct: 119 VLKLDHLIDADQPSLRYIGKCLKEFKKAGKPIFSIGENYSQLQYYLSSFADKIYISNYGK 178

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVNPKAVQMMQDVVDSSY 186
           +   G+     Y K FL+KL +     ++   K+   PF    ++ ++ +     +   +
Sbjct: 179 IDIHGISNYRMYYKDFLEKLKIKSHIFRAGKYKSAVEPFMRNNMSHESKENHFSCLRKLW 238

Query: 187 HWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
             ++R VSE+RNI  +            +   R           L+D V  +    +   
Sbjct: 239 KDYLRTVSENRNIKINDVFPEINSMIKKIKSNRGNITKYLMDQKLVDYVIEKTNPEEKFI 298

Query: 239 ALGVDQSIR----KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                        +I  +    +    + K L   +     I ++    VQG+ +
Sbjct: 299 EKFGLSRDDNQYNRISIYEYKNDSTRRNDKFLGKRNDFPSNIAVIF---VQGMIS 350


>gi|167470630|ref|ZP_02335334.1| protease 4 [Yersinia pestis FV-1]
          Length = 586

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 18/273 (6%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
           +        +A +   G I D            L  +I +   D    A+I+ ++SPGGS
Sbjct: 287 TPAPQQGEQIAVLFANGAIIDGPQPPGNVGGDTLAAQIRQARLDPKIKAVILRVNSPGGS 346

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +  ++   KP++  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 347 VSASELIRAELAALRAAHKPLVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 406

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  L  +GV    V +SP+    S    + P+  QMMQ  +++ Y  F+ LV+ SR+
Sbjct: 407 NTFQNSLASIGVHTDGVATSPLADV-SLTKALPPEFSQMMQINIENGYKTFIDLVATSRH 465

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256
              ++   ++ G +W G +AK  GL+D +G  ++  +    L   +   +    D     
Sbjct: 466 KTPEQVDQIAQGHVWIGLDAKSNGLVDQLGDFDDAVKKAAELAKLKTWQLNWFVD----- 520

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                DL    +S+ +   +P   QT +    +
Sbjct: 521 EPSLSDLILGQMSASVHAMLPAAIQTWLPAPLS 553



 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 102/303 (33%), Gaps = 44/303 (14%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------------- 51
           + L ++    +YF + S   +       + + G I D                       
Sbjct: 1   MALLILIGLGIYFQFQSKPVEPVKGALLVNLSGVIVDQPAINNKLRQWGRELLGASSNRL 60

Query: 52  ------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVH 104
                 +++E I     DD+   L++SLS   G+  +  + I +A+++ ++    I  V 
Sbjct: 61  QENSLFDIVETIRLAKDDDNINGLVLSLSDLTGADQSSLQYIGKALREFRDTGKKIYAVG 120

Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164
           +      Y ++  +N I  +    V   G      Y K  L+ L V+    +    K+  
Sbjct: 121 DSYNQTQYYLASFANKIYLSPQGAVDLHGFASNNLYYKSLLENLKVTTNIFRVGTYKSAV 180

Query: 165 SPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWT 214
            P   ++++  A +     V   +  ++  VS +R +  ++           L       
Sbjct: 181 EPMIRNDMSAAAREADSRWVGGLWQNYLTTVSANRRLTPEQLFPGAAGVISGLQVAGGSQ 240

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYA------LGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
              A    L+D +  + EV  +L           D +   I D+ P       +   +  
Sbjct: 241 AKYALDSKLVDQLAARPEVESALVEAFGWNKKTNDFNYISIYDYQPTPAPQQGEQIAVLF 300

Query: 269 SSL 271
           ++ 
Sbjct: 301 ANG 303


>gi|167854498|ref|ZP_02477279.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Haemophilus
           parasuis 29755]
 gi|167854253|gb|EDS25486.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Haemophilus
           parasuis 29755]
          Length = 621

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/269 (24%), Positives = 129/269 (47%), Gaps = 13/269 (4%)

Query: 18  VTLTVVYFSWSSHVED-NSPHVARIAIRGQIE---------DSQELIERIERISRDDSAT 67
           +       S S          +A + + G I           S  +++ + +   DD   
Sbjct: 306 IDFFDYSLSLSDRFNVVGKDKIAIVNVEGAIVLGESDDEVAGSDTIVKLLRKAREDDDVR 365

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAET 126
            +++ ++SPGGSA A E I + ++ ++   KPV+  +  MAAS GY I+  S+ I+A+ T
Sbjct: 366 GVVLRINSPGGSAMASELIRQEVEDLQQAGKPVVASMGGMAASGGYWIAATSDKIIASPT 425

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           +L GSIG+       +    KLGV+   V +SP   + +  S ++ +  +++Q  +++ Y
Sbjct: 426 TLTGSIGIFGLAVSFEKTAKKLGVNEDGVSTSPFAQQTALKS-LSKEQSELIQISIENGY 484

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
             F+ LVS+ R +       ++ G++W G  A + GL+D +G  ++ + +L  L  ++  
Sbjct: 485 DRFLELVSKGRKMSKGDVDKVAQGQVWLGESAFEKGLVDELGDFDDAYHALTILINEKRK 544

Query: 247 RKIK-DWNPPKNYWFCDLKNLSISSLLED 274
            K + +       W  D  +  IS ++ D
Sbjct: 545 AKGETEIERFSTQWLIDESDDLISQVMRD 573


>gi|285019630|ref|YP_003377341.1| periplasmic serine protease [Xanthomonas albilineans GPE PC73]
 gi|283474848|emb|CBA17347.1| putative periplasmic serine protease protein [Xanthomonas
           albilineans]
          Length = 630

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 121/257 (47%), Gaps = 12/257 (4%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           D  P VA +   G+I            +  ++ + +   DD+  A+++ + SPGG  +A 
Sbjct: 329 DARPQVAVVVAAGEISAGEQPAGRIGGESTVQLLRQAREDDAVKAVVLRVDSPGGEVFAS 388

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I R +  +K   KPV+  + + AAS GY IS +++ I A  +++ GSIG+    P + 
Sbjct: 389 EQIRREVVALKAAGKPVVVSMGDYAASGGYWISMSADRIYADPSTITGSIGIFGMVPNIA 448

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LDK+GV    V ++           ++P   Q++Q  ++  Y  F   V+++R    +
Sbjct: 449 RALDKIGVHTDGVGTTRYAGAFDISRPMDPIVGQLIQSAINKGYADFTGKVAQARGKSVE 508

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQE--EVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
               ++ GR+W+GA+AK+ GL+D  GG +      +  A    Q   +++    P + + 
Sbjct: 509 AIDQVARGRVWSGAQAKERGLVDAFGGFKDAVADAAARAKLGGQDKYRVRYIEKPASPFA 568

Query: 261 CDLKNLSISSLLEDTIP 277
             +   + S +    + 
Sbjct: 569 QFVNGFAGSRMGVWMLG 585



 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 85/213 (39%), Gaps = 12/213 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQKVKNRKPVITEVHEMAAS 109
           ++L+  IE    D     + + L     S +A    +  A++ +++    I    +    
Sbjct: 99  RDLVRAIEAAKTDPKIERVALRLDKLQPSGFASMREVAAALEDLRSSGKQIVAYSDTLNQ 158

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPF- 167
           + YL++  +N +       +   G+     Y +  L DKLGV +   K    K+   P+ 
Sbjct: 159 SQYLLAAQANEVYLDPMGSMVLEGLGHYRQYFRQGLQDKLGVDVHLFKVGEYKSAAEPYV 218

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT----LVLSDGRIWTGAE----A 218
               +P A +     ++  +  ++  ++++R +   +       + +G +  G +    A
Sbjct: 219 LDAASPAAKEADLFWMNDVWQRYLADIAKARKLSPVQISAGIDSMPEGIVAAGGDMAKFA 278

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
            +  L+D +  ++EV Q L   GV  +    + 
Sbjct: 279 LQQKLVDGLKTRDEVEQLLAKRGVADADTIFRK 311


>gi|78187485|ref|YP_375528.1| protease IV [Chlorobium luteolum DSM 273]
 gi|78167387|gb|ABB24485.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Chlorobium luteolum DSM 273]
          Length = 583

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 108/274 (39%), Gaps = 17/274 (6%)

Query: 31  VEDNSPHVARIAIRGQIE--------------DSQELIERIERISRDDSATALIVSLSSP 76
             D    +A I + G I               D   +   IE   +D    A+++ + SP
Sbjct: 278 KADTKDRIALITLSGPIVRTTGEEALGLGSGVDVAAVRRSIEGALKDRRVKAMVLRIDSP 337

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GG A A   +   +      KP++  +  +AAS GY+ + +   I A   S+ GSIGV  
Sbjct: 338 GGDALASAEMLEMLDSAAVCKPLVVSMSGVAASGGYMAALSGRSIYAEPLSITGSIGVYA 397

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
             P +   + K+G+    V         S +  ++ +A +   +     Y  FV  V+ +
Sbjct: 398 LKPEISGLVQKIGLGRSIVTRGRNADANSIYKPLDGEAYRKFVEASGEVYRDFVGKVARA 457

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI--RKIKDWNP 254
           R +   +   L+ GR+WTG  A +VGL+D  GG  +       LG   S    +I  + P
Sbjct: 458 RKMSPGRVDSLAGGRVWTGRRALEVGLVDRSGGLFDALGEAQRLGGIDSTRQPEIVCY-P 516

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
            +  W   L     S++       +    +  L 
Sbjct: 517 REKSWLELLVRGDFSAIGSRVESALAGRVIGRLM 550



 Score = 78.9 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 96/258 (37%), Gaps = 22/258 (8%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI------------------EDSQELI 54
           V+L L  L ++ +            V  + + G +                     Q+L+
Sbjct: 2   VLLPLAGLALILWLNHGGRSLPDRFVLSVPLSGSLDERAPSASGLPFSSAEGPLSLQDLL 61

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114
             +   S D    A+++ +     +      + RAI++ +     +         +  ++
Sbjct: 62  FTLHHASSDPRVDAVLLDIDGVRTTPSKISELRRAIERTRASGKRVIAFLHSPEDSDCML 121

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172
             A + ++  E   +   G+  +  Y    L K+GVS ++ +    K+   PF  +  +P
Sbjct: 122 GAACDSVIVEEGGFMLLDGLRAETLYFATPLRKIGVSFQAAQWKRYKSGIEPFVRTGPSP 181

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLIDVVGGQE 231
           +A + +  ++D  Y  ++  VS  R++  D    + D   + T  EA ++GL D V    
Sbjct: 182 EAEEEVSVLLDEVYRDYIGYVSRRRHLSPDSLRSIIDNVTLMTSPEAVRLGLADGVASSW 241

Query: 232 EVWQSLY-ALGVDQSIRK 248
              + L   L   +   +
Sbjct: 242 RFHRELERRLTGKEPDPE 259


>gi|257882224|ref|ZP_05661877.1| protease/peptidase [Enterococcus faecium 1,231,502]
 gi|257885419|ref|ZP_05665072.1| protease/peptidase [Enterococcus faecium 1,231,501]
 gi|293568402|ref|ZP_06679723.1| signal peptide peptidase [Enterococcus faecium E1071]
 gi|294623115|ref|ZP_06702001.1| signal peptide peptidase [Enterococcus faecium U0317]
 gi|14548273|sp|Q9X480|SPPA_ENTFC RecName: Full=Putative signal peptide peptidase sppA
 gi|4760912|gb|AAD29142.1|AF099088_11 protease IV homolog [Enterococcus faecium]
 gi|257817882|gb|EEV45210.1| protease/peptidase [Enterococcus faecium 1,231,502]
 gi|257821275|gb|EEV48405.1| protease/peptidase [Enterococcus faecium 1,231,501]
 gi|291588923|gb|EFF20750.1| signal peptide peptidase [Enterococcus faecium E1071]
 gi|291597484|gb|EFF28649.1| signal peptide peptidase [Enterococcus faecium U0317]
          Length = 344

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/254 (27%), Positives = 121/254 (47%), Gaps = 14/254 (5%)

Query: 30  HVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSP 76
               ++  + ++++ G I D+             Q  + ++++I  D +   +++ ++SP
Sbjct: 57  EEGASNKKIVKLSVNGVIADTGESNLFSREQYNHQNFLTQLKKIQEDKAVKGVLLEVNSP 116

Query: 77  GGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           GG  Y    I + + K+K    P+ T     AAS GY IS  S+ I A E +  GSIGV+
Sbjct: 117 GGGIYESAEIAKEMAKIKKLDIPIYTAFKNTAASGGYYISAGSDKIFATEETTTGSIGVI 176

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                    L+KLGV+  + KS  +K   SP  + + +  +++Q+ V S+Y  FV +V++
Sbjct: 177 ISGLNYSGLLEKLGVTDATYKSGALKDMMSPQHKPSEEENKVIQEFVMSAYDRFVNVVAK 236

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
            RN+  +    L+DGRI+ G +A + GL+D +G  E+   SL           I+  N  
Sbjct: 237 GRNMDTNAVKELADGRIYDGNQAVENGLVDQIGYSEDALDSLKKEKKLTDATVIEYKNDT 296

Query: 256 KNYWFCDLKNLSIS 269
             +    L N    
Sbjct: 297 TGFASSWLGNKIAE 310


>gi|159903808|ref|YP_001551152.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus str. MIT 9211]
 gi|159888984|gb|ABX09198.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus str. MIT 9211]
          Length = 269

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 127/264 (48%), Gaps = 5/264 (1%)

Query: 33  DNSPHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            +   +ARI I G I        ++ ++++   +   AL+V + SPGG+    + I  A+
Sbjct: 8   KSKKRMARIIIDGAINGDTRKLFLKAVKQVEERE-FPALLVRIDSPGGTVGDSQEIHAAL 66

Query: 91  QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
            +++     V+     ++AS G  +  A+  IVA   ++ GSIGV+ +   +   L+K+G
Sbjct: 67  LRLRESGCHVVASFGNISASGGVYVGVAAEKIVANPGTITGSIGVILRGNNLSKLLEKIG 126

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +  ++VKS   K   SP   ++ +  +++Q ++DSSY  FV  V++ R +  +     +D
Sbjct: 127 IKFETVKSGLYKDILSPDRALSKEERELLQSLIDSSYGQFVEAVAKGRGLSEEVVRGFAD 186

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           GR++TG +A+++GL+D +G +         L       +      PK      L   +I 
Sbjct: 187 GRVFTGTQARELGLVDELGDENHAKLLAAKLADLDEKLQPITLGRPKKKLLGLLPGGNIL 246

Query: 270 SLLEDTIPLMKQTKVQGLWAVWNP 293
             L + + +      Q LW ++ P
Sbjct: 247 RNLVEQVTMELSNSGQILW-LFRP 269


>gi|292488447|ref|YP_003531329.1| protease IV [Erwinia amylovora CFBP1430]
 gi|292899636|ref|YP_003539005.1| protease IV [Erwinia amylovora ATCC 49946]
 gi|291199484|emb|CBJ46601.1| protease IV [Erwinia amylovora ATCC 49946]
 gi|291553876|emb|CBA20921.1| protease IV [Erwinia amylovora CFBP1430]
 gi|312172589|emb|CBX80845.1| protease IV [Erwinia amylovora ATCC BAA-2158]
          Length = 617

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/267 (24%), Positives = 115/267 (43%), Gaps = 14/267 (5%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSA 80
               +  +VA I   G I D +E            +I     D    A++  ++SPGGS 
Sbjct: 319 KDSSSDGNVAVILASGAIADGEETPGSVGGDTTALQIRAARLDPKIKAIVFRVNSPGGSV 378

Query: 81  YAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
            A E I   +       KPV+  +  MAAS GY +S  ++ I+A+  +L GSIG+     
Sbjct: 379 TASETIREELAAAKDAGKPVVVSMGGMAASGGYWVSTPADYIIASPNTLTGSIGIFSVIN 438

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            V+  L+ +GV    V +SP+    +    +  +  QM Q  +D  Y  F+ LV++SR+ 
Sbjct: 439 TVENSLEAIGVHTDGVSTSPLADV-ASTRALPAEVQQMTQLSIDKGYQNFIDLVAKSRHK 497

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
              +   ++ G +WTG++AK  GLID +G  ++       L       ++  ++      
Sbjct: 498 TPGEIDQIAQGHVWTGSDAKANGLIDALGDFDDAVTKAAELAKLH-TPQLSWYH--DEPG 554

Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQG 286
             D+    +       +P   +  +  
Sbjct: 555 LLDMLVSQVEVAAHAALPATLKAYLPA 581



 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 112/321 (34%), Gaps = 46/321 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +   +++L +V    ++F    +S           + + G + D         
Sbjct: 19  LNFVREFVLNLFLILLIVVALGLWFQLHNASTPAATQKGALVVNLSGVVVDKPSVSNKFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               ++++ I +   D + T +++ L +  G+     + I +A+
Sbjct: 79  KIGRQLLGASSDRLKENSLFDVVDAIRQAKDDANITGVVLDLRNFAGADQPSLQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    I    E  + A Y ++  +N I  +    V   G      Y K  +DKL V
Sbjct: 139 REFRDGGKPIFASGESYSQAQYYLASFANKIYLSPLGNVDLHGFATHSLYYKTLIDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           S    +    K+   PF    ++P+A       +   +  ++  ++ +R I  D+    +
Sbjct: 199 SSHVFRVGTYKSAVEPFLRDSMSPEARDADGRWIGKLWQNYLNTLAANRQITADQVFPGA 258

Query: 209 DGRI--------WTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNP 254
            G +         T   AK+  L+D +     V   L           +     I D+  
Sbjct: 259 QGMLNGLQKFGGDTAQYAKENKLVDELASASRVEHELAKTFGWDKEANNYRGTSIYDYQV 318

Query: 255 PKNYWFCDLKNLSISSLLEDT 275
             +    ++  +  S  + D 
Sbjct: 319 KDSSSDGNVAVILASGAIADG 339


>gi|228470849|ref|ZP_04055696.1| signal peptide peptidase SppA, 67K type [Porphyromonas uenonis
           60-3]
 gi|228307416|gb|EEK16426.1| signal peptide peptidase SppA, 67K type [Porphyromonas uenonis
           60-3]
          Length = 594

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 124/269 (46%), Gaps = 16/269 (5%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI----EDS---------QELIERIERIS 61
           L  V+L  VY +  S       ++  +   G+I     DS          +L +RI  + 
Sbjct: 289 LYFVSLRDVY-ATRSSARSGEANIGVLFAEGEINVEETDSPFNTKKVVTDQLADRILEMG 347

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
            DD   AL+V ++SPGGS+Y  E ++ A+ K    KPV+  + + AAS GY +S  ++ I
Sbjct: 348 EDDDYDALVVRVNSPGGSSYISEQLWYAVHKASQNKPVVISMGDYAASGGYYMSSGASYI 407

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
            A  +++ GSIG+    P      +K+GV    VK++      +       +   + Q  
Sbjct: 408 FAEPSTITGSIGIFGVVPNATKLANKIGVHQDVVKTARYADLGALDRPWTEEERGLFQQY 467

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           V+  Y  F++ VSE R +  D+   ++ GR+WTGA+A  +GL+D +GG ++         
Sbjct: 468 VNRGYELFLKRVSEGRGMTRDQVDSIAQGRVWTGAQALGLGLVDELGGLQDAIAYAATQA 527

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISS 270
              S      +   +     +L N S  +
Sbjct: 528 GYDSYH--VTYARREVNVLQELFNRSTQT 554



 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 91/269 (33%), Gaps = 27/269 (10%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------------- 50
            +    + L  +   +   + +   +     + +I +   I D+                
Sbjct: 22  FVSLSIIALIGIFAGLSVGANNETQKIKDGSILKINLT-NISDTYVSNPWAELGFDKGDR 80

Query: 51  ------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH 104
                   +IE I+    DD    + +++  PG    + EA+  A++  K     I    
Sbjct: 81  CQDLPLSYVIEAIDEAKNDDRIKGIYLNMMDPGCGFASAEALRGALEDFKQTGKFIVSYS 140

Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164
           +  +  GY ++  ++ +   +   +   G+     + K  LDK+GV +   K    K+  
Sbjct: 141 DFYSLKGYYLASVADQLYVNKEGSIAFDGLAGGAVFFKDLLDKIGVEMMVFKVGTFKSAV 200

Query: 165 SPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD--GRIWTGAEAKK 220
            P+    ++      +   +   +   +  V  SR +   +   L+D    + T      
Sbjct: 201 EPYMLNSMSEANRTQISSYLGDIWGRILGEVGTSRGLDSVRLQALADSMQSVQTTDSYLA 260

Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
             LID    Q++  + L +L        +
Sbjct: 261 NKLIDGALYQDQALEQLCSLVDVDGPDDL 289


>gi|189499532|ref|YP_001959002.1| signal peptide peptidase SppA, 67K type [Chlorobium
           phaeobacteroides BS1]
 gi|189494973|gb|ACE03521.1| signal peptide peptidase SppA, 67K type [Chlorobium
           phaeobacteroides BS1]
          Length = 596

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 113/273 (41%), Gaps = 18/273 (6%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIE--------------DSQELIERIERISRDDSATAL 69
                 +  +   H+A I   G I               D + L   ++    D+S  A+
Sbjct: 287 AAVPWPYKPETKEHIAVITASGPIVRSSDDMAAGTEQGFDEETLRSSVQAALDDESVKAI 346

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           ++ + SPGG A A   + + +   + +KP++T +  +AAS GY+I+ A++ I A   ++ 
Sbjct: 347 VLRIDSPGGDALASANMLQVLDSARVKKPIVTSMSSVAASGGYMIALAADSIFAEPLTVT 406

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV    P +    +K+ ++ +           + F  ++   +    +     Y  F
Sbjct: 407 GSIGVYALKPEISKLQEKIALNREVFTRGKNADAYTVFKPLDEAGMAKFMETTGWIYDDF 466

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS--IR 247
           +  V  SR +  ++   ++ GR+W G  A K GL+D +GG  E  ++   L    S  + 
Sbjct: 467 LDKVVRSRKMTREEVDAVAGGRVWMGEAAVKNGLVDRIGGLPEALRAAQVLAGIDSAAVP 526

Query: 248 KIKDWNPPKNYWFCDLKNLSI--SSLLEDTIPL 278
            +K +  P+              S L    IP 
Sbjct: 527 GLKFYPEPQGLMDYLFGGGPGIESHLFSSKIPA 559



 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 107/247 (43%), Gaps = 21/247 (8%)

Query: 21  TVVYFSWSSHVEDNSPHVARIAIRGQIEDS------------------QELIERIERISR 62
             VY  +++        V +I I G I ++                  Q++I  ++R S 
Sbjct: 25  IGVYRLFTAQKSLPEEFVLKIDISGDIRETVDTGFALPFERESQELSLQDIIFLLDRASE 84

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           D     +++ +      +   + I RAI++ +N   ++      A      ++ A + ++
Sbjct: 85  DTRIKGILLDIDGVRTGSAKIQQIQRAIERTRNSGKLVNAFLRNAGDQDVWLASACDAMI 144

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV--NPKAVQMMQD 180
           A   + +   G+  +  +    L+KLGVS ++V+ +  K+   PF+ +  +P+  + ++ 
Sbjct: 145 AERGNFLLLDGLRAELLFYTGTLEKLGVSFQAVQWTDWKSGVEPFTRLAASPEFRERIEM 204

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
            +DS Y  +   V++ R+IP +   ++ +   + +  +AK++ ++D V G  E  + L  
Sbjct: 205 SLDSVYAAYTGYVTKQRDIPLETYEIIINEKTVLSADQAKELKVVDEVNGHWEYLERLKK 264

Query: 240 LGVDQSI 246
                  
Sbjct: 265 SYGKGKN 271


>gi|76800828|ref|YP_325836.1| signal peptide peptidase [Natronomonas pharaonis DSM 2160]
 gi|76556693|emb|CAI48265.1| probable signal peptide peptidase [Natronomonas pharaonis DSM 2160]
          Length = 335

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/270 (24%), Positives = 117/270 (43%), Gaps = 22/270 (8%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSP--HVARIAIRGQIE---------------DSQELIE 55
           V+  +V  TV      +     +P  +VA +A+ G I                 + +++E
Sbjct: 44  VVFVIVAATVGLRIGGNIATSLAPGYNVAEVAVEGPITRDGGGGMPLSPPGSPGADDIVE 103

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
           +IE    DD+  AL++ L++PGG+    + I  A +      P +    +  AS GY I+
Sbjct: 104 QIEDADADDNVEALLLRLNTPGGAVVPSDDIRLAAEAF--DGPTVAYTTDACASGGYWIA 161

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
              + + A   S+VGSIGV          LD+ GV  + + +   K    PF ++     
Sbjct: 162 SGCDELWARRGSVVGSIGVRGSRMTAAELLDRAGVEYEQLTAGEYKEAGVPFDDLGDDER 221

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           Q +Q +VD  Y  FV  V+E R +        ++ +++ G EA + GL+D +G ++EV +
Sbjct: 222 QYLQGIVDDYYDQFVETVAEGREMEPSAVRE-TEAKVFLGEEAFERGLVDDLGTKDEVCE 280

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L  +   +   +  +  P +         
Sbjct: 281 RLEEVLGTE--VETTELEPQQGLAARLQGG 308


>gi|226356235|ref|YP_002785975.1| peptidase S49 [Deinococcus deserti VCD115]
 gi|226318225|gb|ACO46221.1| putative peptidase S49, Signal peptide peptidase (SPPase)
           [Deinococcus deserti VCD115]
          Length = 533

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/285 (21%), Positives = 113/285 (39%), Gaps = 22/285 (7%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQELIERIER 59
              V+      +    +  VA + + G I                     S  ++  ++R
Sbjct: 242 LAAVMDLLMPRNANAKAGRVAVVPVIGTIVPGKSRNNPIPLPLMGGPMAGSDTVVAALKR 301

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119
              D    A++V ++S GGSA A + ++R I    + KPV+  + E AAS GY ++  + 
Sbjct: 302 AKEDKKTKAIVVYVNSGGGSALASDLMWREIA--TSEKPVVVVMGEYAASGGYYLATHAR 359

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179
            IVA+  +L GSIGV+   P ++ F  + G+  + V         S       +  Q ++
Sbjct: 360 HIVASPYTLTGSIGVVSGKPIMREFNARHGLKPERVGR-ERALMHSASQPYTVEERQHVE 418

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +   Y  F+  V+E R +  ++   +  GRIW G +A ++GL+D +G           
Sbjct: 419 RAIAEVYDRFITRVAEGRKLSKERVNEIGRGRIWAGQDALELGLVDELGDLHTGVLRATE 478

Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
           L        + +  P  +    +    +  +      P   +  +
Sbjct: 479 LAGLPYDAPVWNVAPKSSGPLPEFAQEAARAAQVTIWPFGNERVL 523



 Score = 57.3 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 78/186 (41%), Gaps = 3/186 (1%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + L  ++E++   +    ++V +S   GS     A+   + ++   K V+  + ++  +A
Sbjct: 51  EALSAKVEKLRHAEWLHGVLVRVSGFTGSPATAHAVRGILSRLAQDKRVVAYLPQLTMTA 110

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFS 168
               S A   IVA E++ V   G   +  ++  FL K G+  ++++    KA        
Sbjct: 111 LIAGSGA-REIVAPESADVALAGFATEPTFMGAFLKKHGIEFENLRIREYKAALTRFSQE 169

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
            ++    + +Q  +      +   ++ +R +  +      D  + +   A + GLI  V 
Sbjct: 170 HMDDANREQLQAFLTGLETAWASDLAAARGVSIETAQAWLDADLTSAQGALEAGLITKVA 229

Query: 229 GQEEVW 234
            ++E+ 
Sbjct: 230 YEDELV 235


>gi|262362087|gb|ACY58808.1| protease IV [Yersinia pestis D106004]
          Length = 579

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 18/273 (6%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
           +        +A +   G I D            L  +I +   D    A+I+ ++SPGGS
Sbjct: 280 TPAPQQGEQIAVLFANGAIIDGPQPPGNVGGDTLAAQIRQARLDPKIKAVILRVNSPGGS 339

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +  ++   KP++  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 340 VSASELIRAELAALRAAHKPLVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 399

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  L  +GV    V +SP+    S    + P+  QMMQ  +++ Y  F+ LV+ SR+
Sbjct: 400 NTFQNSLASIGVHTDGVATSPLADV-SLTKALPPEFSQMMQINIENGYKTFIDLVATSRH 458

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256
              ++   ++ G +W G +AK  GL+D +G  ++  +    L   +   +    D     
Sbjct: 459 KTPEQVDQIAQGHVWIGLDAKSNGLVDQLGDFDDAVKKAAELAKLKTWQLNWFVD----- 513

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                DL    +S+ +   +P   QT +    +
Sbjct: 514 EPSLSDLILGQMSASVHAMLPAAIQTWLPAPLS 546



 Score = 80.8 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 99/296 (33%), Gaps = 44/296 (14%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------E 52
           ++V  F++   +         + + G I D                             +
Sbjct: 1   MSVFIFNFKVSLWSQLKVALLVNLSGVIVDQPAINNKLRQWGRELLGASSNRLQENSLFD 60

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAG 111
           ++E I     DD+   L++SLS   G+  +  + I +A+++ ++    I  V +      
Sbjct: 61  IVETIRLAKDDDNINGLVLSLSDLTGADQSSLQYIGKALREFRDTGKKIYAVGDSYNQTQ 120

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SE 169
           Y ++  +N I  +    V   G      Y K  L+ L V+    +    K+   P   ++
Sbjct: 121 YYLASFANKIYLSPQGAVDLHGFASNNLYYKSLLENLKVTTNIFRVGTYKSAVEPMIRND 180

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKV 221
           ++  A +     V   +  ++  VS +R +  ++           L          A   
Sbjct: 181 MSAAAREADSRWVGGLWQNYLTTVSANRRLTPEQLFPGAAGVISGLQVAGGSQAKYALDS 240

Query: 222 GLIDVVGGQEEVWQSLYA------LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
            L+D +  + EV  +L           D +   I D+ P       +   +  ++ 
Sbjct: 241 KLVDQLAARPEVESALVEAFGWNKKTNDFNYISIYDYQPTPAPQQGEQIAVLFANG 296


>gi|118474707|ref|YP_892637.1| signal peptide peptidase SppA, 36K type [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118413933|gb|ABK82353.1| signal peptide peptidase SppA, 36K type [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 287

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 118/248 (47%), Gaps = 5/248 (2%)

Query: 1   MEFVLKKIKTRYVML-----SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIE 55
           ++F+  KI   +  +     S V L +V     +  +    ++  I+++G I D  E++ 
Sbjct: 4   LKFIFSKIGAIFKFVNEYFKSFVFLLIVILIIVNSGKSEIANLTEISLKGAIIDESEILS 63

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
           +I     D     +++++ SPGGS      I  AI+ + + KPVI       AS  Y  S
Sbjct: 64  QIYEAKNDSFIKGVLLNIDSPGGSMAPSVQISDAIKDLASIKPVIAYASGTMASGSYYSS 123

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
             +N I A   S +GSIGV+ Q P V+    KLGVS +++K+   K   +     N    
Sbjct: 124 IWANKIYANRGSFIGSIGVIVQSPNVEELAKKLGVSTQTIKAGKYKEAGTFIRGWNEDEK 183

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
             +Q +V+ SY  F   V+ +RN+  DK  + ++ R++   +AK VGLID V    EV  
Sbjct: 184 NELQSLVNRSYEMFYTDVAMARNLDIDKKDIWANARVFLAPDAKSVGLIDDVKSYFEVKS 243

Query: 236 SLYALGVD 243
            L  L   
Sbjct: 244 ELELLSGV 251


>gi|94984761|ref|YP_604125.1| peptidase S49 [Deinococcus geothermalis DSM 11300]
 gi|94555042|gb|ABF44956.1| peptidase S49 [Deinococcus geothermalis DSM 11300]
          Length = 536

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/285 (21%), Positives = 116/285 (40%), Gaps = 22/285 (7%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQELIERIER 59
              V+           +  VA +++ G I                     S  ++  ++ 
Sbjct: 245 LAAVLDLLLPRRGNAKAGRVAVVSLVGSIVPGKSRHNPLPLPLLGGPLAGSDTVVAALKH 304

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119
             +DD   A+++ ++S GGSA A + I+R +    + KPV+  + E AAS GY +   + 
Sbjct: 305 AKKDDKTKAIVLYVNSGGGSALASDLIWREVA--TSEKPVVAVMGEYAASGGYYVLTHAR 362

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179
            IVA+  +L GSIGV+   P ++ F  + G+  + V S       S     + +    ++
Sbjct: 363 HIVASPYTLTGSIGVVSGKPVLQEFNARHGLKPEPVGS-ERALMYSAARPFSDEERAHVE 421

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +   Y  FV  V+E R +  ++   +  GRIW+G +A  +GL+D +G      +    
Sbjct: 422 QGIAEVYDRFVNRVAEGRGMTPERVNEIGRGRIWSGLDALDLGLVDELGDLRTGIERACE 481

Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
           L        + +  P K     +    +  +      P  ++  +
Sbjct: 482 LAGLPYDAPVWNATPAKTGPLPEFVQQAARAAQVSVWPFGRERVL 526



 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 77/186 (41%), Gaps = 3/186 (1%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + L  R++++   D    ++V +S    +     AI + + ++   K V+  + ++  +A
Sbjct: 54  EGLAARVDKLRHADWLHGVLVRISEFTAAPATAHAIRQLLARLAQDKRVVAYLPQLTMTA 113

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFS 168
               S A   IVA E++ V   G   Q  ++  FL + G+  ++++    KA        
Sbjct: 114 LLAASGA-REIVAPESADVLVPGFAVQPTFLGAFLKRHGIEFENLRIREYKAALTRFSQD 172

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
            ++    + +   + S    +   ++ +R +          G + +   A+  GLI  V 
Sbjct: 173 HMDEANREQLTAYLHSLEKAWALDLAAARGVSEATARTWLRGDLTSARAAQAAGLITQVA 232

Query: 229 GQEEVW 234
            ++E+ 
Sbjct: 233 YEDELV 238


>gi|170024325|ref|YP_001720830.1| protease 4 [Yersinia pseudotuberculosis YPIII]
 gi|169750859|gb|ACA68377.1| signal peptide peptidase SppA, 67K type [Yersinia
           pseudotuberculosis YPIII]
          Length = 616

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 18/273 (6%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
           +        +A +   G I D            L  +I +   D    A+I+ ++SPGGS
Sbjct: 317 TPAPQQGEQIAVLFANGAIIDGPQTPGNVGGDTLAAQIRQARLDPKIKAVILRVNSPGGS 376

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +  ++   KP++  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 377 VSASELIRAELAALRAAHKPLVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 436

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  L  +GV    V +SP+    S    + P+  QMMQ  +++ Y  F+ LV+ SR+
Sbjct: 437 NTFQNSLASIGVHTDGVATSPLADV-SLTKALPPEFSQMMQINIENGYKTFIDLVATSRH 495

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256
              ++   ++ G +W G +AK  GL+D +G  ++  +    L   +   +    D     
Sbjct: 496 KTPEQVDQIAQGHVWIGLDAKSNGLVDQLGDFDDAVKKAAELAKLKTWQLNWFVD----- 550

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                DL    +S+ +   +P   QT +    +
Sbjct: 551 EPSLSDLILGQMSASVHAMLPAAIQTWLPAPLS 583



 Score = 82.7 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 97/293 (33%), Gaps = 44/293 (15%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIE 55
           +YF + S   +       + + G I D                             +++E
Sbjct: 41  IYFQFQSKPVEPVKGALLVNLSGVIVDQPAINNKLRQWGRELLGASSNRLQENSLFDIVE 100

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114
            I     DD+   L++SLS   G+     + I +A+++ ++    I  V +      Y +
Sbjct: 101 TIRLAKDDDNINGLVLSLSDLTGADQPSLQYIGKALREFRDTGKKIYAVGDSYNQTQYYL 160

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172
           +  +N I  +    V   G      Y K  L+ L V+    +    K+   P   ++++ 
Sbjct: 161 ASFANKIYLSPQGAVDLHGFASNNLYYKSLLENLKVTTNIFRVGTYKSAVEPMIRNDMSA 220

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLI 224
            A +     V   +  ++  VS +R +  ++           L          A    L+
Sbjct: 221 AAREADSRWVGGLWQNYLTTVSANRRLTPEQLFPGAAGVISGLQVAGGSQAKYALDSKLV 280

Query: 225 DVVGGQEEVWQSLYA------LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           D +  + EV  +L           D +   I D+ P       +   +  ++ 
Sbjct: 281 DQLAARPEVESALVEAFGWNKKTNDFNYISIYDYQPTPAPQQGEQIAVLFANG 333


>gi|254362448|ref|ZP_04978557.1| S49 family peptidase IV [Mannheimia haemolytica PHL213]
 gi|261494115|ref|ZP_05990618.1| S49 family peptidase IV [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496044|ref|ZP_05992454.1| S49 family peptidase IV [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|153094037|gb|EDN74953.1| S49 family peptidase IV [Mannheimia haemolytica PHL213]
 gi|261308294|gb|EEY09587.1| S49 family peptidase IV [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261310281|gb|EEY11481.1| S49 family peptidase IV [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 618

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 129/271 (47%), Gaps = 15/271 (5%)

Query: 31  VEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
            E N+P +A + + G I           S+ L++ +++   D +   LI+ ++SPGGSA 
Sbjct: 317 AEVNAPKIAVVNVEGAIAGGESDEMNVGSETLVKLLQQARDDKNVEGLILRINSPGGSAV 376

Query: 82  AGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           A E I + ++  +   KPV+  +  MAAS GY I+  S+ I+A+  +L GSIG+      
Sbjct: 377 ASELIRQEVEAFQQAGKPVVASMGGMAASGGYWIAATSDKIIASPNTLTGSIGIFGLAVT 436

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
            +     LGVS   + +S +  +    S +  +  +++Q  +++ Y  F+ LVS  R +P
Sbjct: 437 FEKTAKNLGVSEDGIATSALAQQAGLKS-LPQEQAEVLQIGIENGYDRFLELVSRGRKMP 495

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
            +    ++ G++W G +A K GL+D +G     + +L  L   +   +    N PK   F
Sbjct: 496 KEVVDKVAQGQVWLGTDALKHGLVDELGNFNVAYNALSELINQKREAE----NQPKVEQF 551

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
                      L  T+    + ++Q   A W
Sbjct: 552 GLQWFAEQDDSLFGTLARDFKAQLQFSVANW 582



 Score = 69.3 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 98/308 (31%), Gaps = 39/308 (12%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------------------EL 53
            +  +  S S+     +    R+ + G + D++                         ++
Sbjct: 34  VVAFISSSGSTQKPVFNQGALRLNLDGYLADNREEFTDFYRLVQSELGSSEPFKISTFDV 93

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ I     D   T L++ L     + ++  + I   I   K     +  V E  +   Y
Sbjct: 94  VQAISHAKNDPKITGLVLDLQKLQSADFSSLDFIGNEINNFKQSGKPVIAVGEDYSQKQY 153

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EV 170
            ++  ++ I   +   V   G+ +   Y K  LDK+       +    K+   PF   ++
Sbjct: 154 YLASFADEIYLNKVGAVDLKGLNYSNTYFKTLLDKIEAEPHIFRVGTYKSAVEPFMRDDM 213

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVG 222
           + +A Q  +  ++ ++   V  ++++RNI                   +      A    
Sbjct: 214 SEEAKQNARGWLNGTWQQTVATLAQNRNIEPQALDLSPANYIEKYKQAKGDDAQLALNQK 273

Query: 223 LIDVVGGQEEVWQSLYALGV---DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
            +  +   +E    L A      + S  +I+  +          +  +    + +    +
Sbjct: 274 WVSQLVSSQESRDKLIAQFGKNSEGSYNQIEFLDYMTELNDRFAEVNAPKIAVVNVEGAI 333

Query: 280 KQTKVQGL 287
              +   +
Sbjct: 334 AGGESDEM 341


>gi|261886139|ref|ZP_06010178.1| signal peptide peptidase SppA, 36K type [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 287

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 118/248 (47%), Gaps = 5/248 (2%)

Query: 1   MEFVLKKIKTRYVML-----SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIE 55
           ++F+  KI   +  +     S V L +V     +  +    ++  I+++G I D  E++ 
Sbjct: 4   LKFIFSKIAAIFKFVNEYFKSFVFLLIVILIIVNSGKSEIANLTEISLKGAIIDESEILS 63

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
           +I     D     +++++ SPGGS      I  AI+ + + KPVI       AS  Y  S
Sbjct: 64  QIYEAKNDSFIKGVLLNIDSPGGSMAPSVQISDAIKDLASIKPVIAYASGTMASGSYYSS 123

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
             +N I A   S +GSIGV+ Q P V+    KLGVS +++K+   K   +     N    
Sbjct: 124 IWANKIYANRGSFIGSIGVIVQSPNVEELAKKLGVSTQTIKAGKYKEAGTFIRGWNEDEK 183

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
             +Q +V+ SY  F   V+ +RN+  DK  + ++ R++   +AK VGLID V    EV  
Sbjct: 184 NELQSLVNRSYEMFYTDVAMARNLDIDKKDIWANARVFLAPDAKSVGLIDDVKSYFEVKS 243

Query: 236 SLYALGVD 243
            L  L   
Sbjct: 244 ELELLSGV 251


>gi|261867920|ref|YP_003255842.1| signal peptide peptidase SppA, 67K type [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413252|gb|ACX82623.1| signal peptide peptidase SppA, 67K type [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 626

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/256 (24%), Positives = 117/256 (45%), Gaps = 13/256 (5%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSL 73
           +         D    +A + + G I D +          +   + +   D    A+++ +
Sbjct: 313 LASLPDRMSGDTKNKIAVVNVEGAIIDGETDEENVGGDTIANLLRKAYDDKDVKAVVLRV 372

Query: 74  SSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           +SPGGSA+A E I + +  ++   KPV+  +  MAAS GY IS  ++ IVA + ++ GSI
Sbjct: 373 NSPGGSAFASEIIRQELSHLQQAGKPVVVSMGGMAASGGYWISSTADYIVADKNTITGSI 432

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           G+    P  +  + K+GVS   VK+S +    S F  ++ +   ++Q  ++  Y  F+  
Sbjct: 433 GIFAVLPTFEKTIKKIGVSADGVKTSDLALG-SAFLPLSSELNDVLQLEIEHGYDEFLTK 491

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG--VDQSIRKIK 250
           VS+ R++   +   ++ G++W G+EA +  L+D +G           L         KI+
Sbjct: 492 VSQGRHLSKAQVDKIAQGQVWLGSEAIEHKLVDELGDLNTALGKAMELVNEKLDENSKIQ 551

Query: 251 DWNPPKNYWFCDLKNL 266
           +      +   D  + 
Sbjct: 552 EEGFSVEWLDDDSGSF 567



 Score = 69.6 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 88/249 (35%), Gaps = 16/249 (6%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA-IQKVKNRKPVITEVHEMAASA 110
           +++  I+  + DD    L++ L+   G          A I+  K     +    +    A
Sbjct: 96  DVVYAIDSAALDDKVRGLVLDLNYFQGGDLPSLEFVGASIENFKKNGKQVIAYSDNYNRA 155

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168
            Y ++  ++ +       V   G++ +  Y K  L+ L V+    +    K+   PF  +
Sbjct: 156 QYFLASYADEVYINPVGTVSIDGLVQENLYYKDLLESLEVNPHVFRVGTYKSAVEPFLRN 215

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-----------KTLVLS-DGRIWTGA 216
           +++ +A   ++  +   ++ + + V+E+RNI  +           +   L  D   +   
Sbjct: 216 DMSDEAKTNLRRWLGIMWNNYKQRVAENRNIKEEAVAPNAHTYLTELKALQGDMTAYVKQ 275

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
                G++D     ++   +L+    D+  + +       +       +      + +  
Sbjct: 276 RKLINGVLDRF-NLDKKLTALFGENEDKQPKMVDYDTYLASLPDRMSGDTKNKIAVVNVE 334

Query: 277 PLMKQTKVQ 285
             +   +  
Sbjct: 335 GAIIDGETD 343


>gi|220934529|ref|YP_002513428.1| peptidase S49 [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995839|gb|ACL72441.1| peptidase S49 [Thioalkalivibrio sp. HL-EbGR7]
          Length = 311

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/261 (23%), Positives = 116/261 (44%), Gaps = 15/261 (5%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISRDDSATALIVSLS 74
           +  +        +   PH A + I+G I +S +     + + + +  RD +  A+++ ++
Sbjct: 45  IIFMSGPMGPGAKKPGPHTALVDIQGVISESSQASADLVTQGLRQAFRDKNTVAVMLRVN 104

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPV---ITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
           SPGGS      I   ++++K   P       + ++ AS GY    +++ I A  +S+VGS
Sbjct: 105 SPGGSPVQSAYINNELRRLKAEHPDTPVYAVISDVGASGGYYAVVSADYIYADASSVVGS 164

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IGV      +   +DKLG+  + + +   K    PF  V+P+    +Q ++D+ +  FV 
Sbjct: 165 IGVRMDGFGLVEAIDKLGIERRLMTAGENKGLLDPFLPVDPREQAHVQRLLDNIHAQFVD 224

Query: 192 LVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
            V   R          L +G IWTG EA  +G+ID +G    V + +           I 
Sbjct: 225 AVKTGRGDRLKGSDEELFNGLIWTGDEALALGIIDGLGSPGYVAREVIGQ------ENIV 278

Query: 251 DWNPPKNYWFCDLKNLSISSL 271
           D+ P ++ +     +   +  
Sbjct: 279 DFTPRQDIFRRLADSFGAAMG 299


>gi|149197052|ref|ZP_01874104.1| protease IV [Lentisphaera araneosa HTCC2155]
 gi|149139598|gb|EDM27999.1| protease IV [Lentisphaera araneosa HTCC2155]
          Length = 587

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 119/277 (42%), Gaps = 6/277 (2%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSP 76
            ++      +   + N+  +A + + G I+    + L   I R S++D   A+++ ++SP
Sbjct: 270 AISFFQKLSAPKKKSNNDILALVNLDGTIDTRMGEALRRYIMRASQNDKVKAMVLRINSP 329

Query: 77  GGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           GGSA A E I +A ++ K   K  +  +  +AAS GY  +     I A   ++ GSIGVL
Sbjct: 330 GGSALASEMICQATEEFKKTGKTFVVSMSNVAASGGYYSAVFGEPIYAESATITGSIGVL 389

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                +    DK+G+S    K        S  S  N      + + ++  Y  F   + +
Sbjct: 390 GGKLVMSKMFDKIGISTHEFKIGKYSDINSSTSFFNEDQRAKITESMNRVYDVFKGRIIQ 449

Query: 196 SRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
            R          ++ GR++TG +AK++GL+D +GG  E           +    ++ +  
Sbjct: 450 GREGKLKGDLEAMAGGRVYTGLQAKELGLVDKIGGLREAINDAKEQAGLKR-YSLETFPK 508

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
             ++    +++       ++ +       V+ + + W
Sbjct: 509 QLSFEEMLMESFRPQEKEDEFVSY-DPITVKSMNSAW 544



 Score = 65.4 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 81/241 (33%), Gaps = 5/241 (2%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
            L+  +      D   A+++            + + R I ++K     +  ++       
Sbjct: 54  HLLSCLNYCVSKDDVKAVVLYAEGMRLGLAQKQELLRRIHEIKKAGKKV-YLYTHGLDEA 112

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--E 169
            L    S  I       V   G+  Q  Y K  LDKLG+    V     K+   PF    
Sbjct: 113 SLPLAQSTEISLFPEGGVSFRGLAMQQLYFKGMLDKLGLEADIVHIGDYKSAGEPFYLTA 172

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
            + +A +  +++ +  +    +  + S          L D  +++  +A    L+D +  
Sbjct: 173 PSEEAAKQQRELGEGLFVEVTKSCATSERKDAAAYRALIDEGLFSSQQALDHKLVDTLEY 232

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
             E  + L         +   ++  PK++    + N+  +      +   K+     + A
Sbjct: 233 HNEFIKRLKKTYAKADFK--LNYGMPKSFEPPKINNMMDAISFFQKLSAPKKKSNNDILA 290

Query: 290 V 290
           +
Sbjct: 291 L 291


>gi|257898289|ref|ZP_05677942.1| protease/peptidase [Enterococcus faecium Com15]
 gi|257836201|gb|EEV61275.1| protease/peptidase [Enterococcus faecium Com15]
          Length = 341

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/276 (23%), Positives = 129/276 (46%), Gaps = 21/276 (7%)

Query: 30  HVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSP 76
              D++  + ++ + G I                +  +E+++ +  D +   + + ++SP
Sbjct: 53  EEGDSTQKIVKLTVDGTIAAGGSSGLFASEGYNHENFMEQLKAVEEDPTVKGIFLEVNSP 112

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG  Y    I + +  ++     P+   +  MAAS GY IS  ++ I A E ++ GSIGV
Sbjct: 113 GGGVYESAEIAKKLDTIRKEHDIPMYVSMKNMAASGGYYISAQADKIFATEETVTGSIGV 172

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +         L+KLGV   +VKS  +K   S       +   ++Q  +DS+Y  FVR+VS
Sbjct: 173 IMSGLNYSGLLEKLGVEDTTVKSGALKDMGSGTRPETKEEEAVLQAYIDSAYQRFVRIVS 232

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           E RN   +    ++DGRI+ G +AK+VGL+D +G  E+  Q++      +   ++ +++ 
Sbjct: 233 EGRNKSEEAVKKIADGRIYDGVQAKEVGLVDELGFPEDALQAMRKEQKLEDA-ELVEYSS 291

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
             + +        ++         +K ++   + ++
Sbjct: 292 ASSGFASTWLGSKLA-----EFQGLKSSETSQILSI 322


>gi|332971011|gb|EGK09983.1| signal peptide peptidase SppA [Psychrobacter sp. 1501(2011)]
          Length = 357

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/270 (22%), Positives = 115/270 (42%), Gaps = 22/270 (8%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQ-----ELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           S  +  +PH+A + I G I         ++   +        + A++++++SPGGS    
Sbjct: 91  STADVTTPHLAVVDIEGVISADDPANAYDVSAALTEAFESKGSKAVVLNINSPGGSPVQS 150

Query: 84  EAIFRA---IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           + I++    ++K    K +   + +M AS  Y I+ A++ I    +SLVGSIGV+     
Sbjct: 151 DQIWQTMMDLRKQHPDKKLYAVIGDMGASGAYYIASAADEIYVNPSSLVGSIGVIMPGYN 210

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           V+  + K GV   ++ +   K   S   +++    Q ++ V+++++  F+  V + R   
Sbjct: 211 VEGLMKKAGVKDTTMTAGEYKDILSISRDLSDYEKQHIESVLNNTHKHFINAVKQGRGDR 270

Query: 201 YDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
                   L  G  WTG +A  +GL D  G        L  L  +  +  + ++ P    
Sbjct: 271 LKDPEKNKLFTGLFWTGEQAIALGLADKKGS-------LMTLEKELKVDDVINYTPADPL 323

Query: 259 W-----FCDLKNLSISSLLEDTIPLMKQTK 283
                 F       I S +E  +   +QT 
Sbjct: 324 QMFLSNFAVQLGSGIGSSVELKLLPEEQTS 353


>gi|323498312|ref|ZP_08103314.1| protease IV [Vibrio sinaloensis DSM 21326]
 gi|323316740|gb|EGA69749.1| protease IV [Vibrio sinaloensis DSM 21326]
          Length = 616

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/272 (26%), Positives = 122/272 (44%), Gaps = 13/272 (4%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSP 76
           + ++     +  VA +   G I D            +   + +   DD   A+++ + SP
Sbjct: 315 TMAARFNTAADDVAIVVASGAIMDGNQPRGTVGGDTVAALLRQARNDDKVKAVVLRVDSP 374

Query: 77  GGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           GGSA+A E I   I  +K   KPV+  +  +AAS GY IS +++ IVA  T+L GSIG+ 
Sbjct: 375 GGSAFASEVIRNEILALKEAGKPVVASMSSVAASGGYWISTSADRIVAQPTTLTGSIGIF 434

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                 +  L++LGV    V ++P  +     + +   A +  Q  ++  Y  F  LVS 
Sbjct: 435 SVITTFEKGLNELGVYTDGVGTTPF-SGVGVTTGLTEGAAEAFQLGIEHGYKRFTDLVSS 493

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI--RKIKDWN 253
           SR IP  +   ++ GR+WTG +A  +GL+D +G  ++  +    L          +++  
Sbjct: 494 SREIPAAQMDNIAQGRVWTGQDALNLGLVDNIGDFDDAVKLAAELAELTDYNLYWVEEPL 553

Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
            P   +  ++ N    SL  D    +      
Sbjct: 554 SPAQQFIQNIMNQVKISLGVDVSAYLPAALQP 585



 Score = 85.8 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 101/291 (34%), Gaps = 39/291 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARI-AIRGQIEDSQ-------- 51
           + FV   +   + + S+  +  VYF   S         A I  + G I +          
Sbjct: 19  ITFVRLALTNLFFLASIAIIYFVYFHAESEAPSVPTKSALILNLSGPIVEQPNYINPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            ++++ +     D++ + L+++    P  +      I +A+ + 
Sbjct: 79  FTGSLLGQDLPRENVLYDIVDTLRYAKDDENVSGLVLALGDLPETNLTKLRYIAKALNEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +  V +    + Y ++  ++ +  A    V   G      Y K  L+KL V+  
Sbjct: 139 KASGKPVYAVGDFYNQSQYYLASYADKVYLAPDGAVMLKGYSAYSLYYKTLLEKLNVNTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL------ 205
             +    K+   PF   +++ +A +     +   +  F   ++ +R I  D         
Sbjct: 199 VFRVGTYKSAIEPFVRDDMSAEAKESASRWLGQLWGAFTDDIAANRQISTDTLNLSMEQF 258

Query: 206 --VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDW 252
             +L +      A +  +GL+D +  +++V   +  +     +      D+
Sbjct: 259 LALLKENNGDLAALSLNIGLVDQLATRQQVRTEMIDVFGSNGEDSYNYIDY 309


>gi|226314459|ref|YP_002774355.1| signal peptide peptidase [Brevibacillus brevis NBRC 100599]
 gi|226097409|dbj|BAH45851.1| putative signal peptide peptidase [Brevibacillus brevis NBRC
           100599]
          Length = 321

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/276 (25%), Positives = 130/276 (47%), Gaps = 29/276 (10%)

Query: 5   LKKIKTRYVMLSLVTLTVVY---------------FSWSSHVEDN--SPHVARIAIRGQI 47
            KK     ++L++  L ++                F+W  +V     +  + ++ + G I
Sbjct: 3   RKKWVALVIVLAVFLLGLLVEGIYGTYTDLVDHPGFAWEENVVSGYGNSKIVQLFVNGTI 62

Query: 48  EDSQE----------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-- 95
              Q           L E++ RI  D+   AL++ + SPGG   A + + R + ++K   
Sbjct: 63  SGQQNSAGVPSMTELLTEQLRRIEEDELVKALVLRIDSPGGEVVATDELHRRLLRLKQVR 122

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
             P++  +   AAS GY ++   + I A   +L GS+GV+F         +KLGV   ++
Sbjct: 123 NLPIVVSMGSTAASGGYYLATTGDAIFANPNTLTGSLGVIFNLFNYSEAANKLGVHQYAI 182

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215
           KS   K   SP   +      + Q +V+ SY+ FV ++ + RN+   + L ++DGR+++G
Sbjct: 183 KSGRFKDIGSPSRPLTDPERHIFQTLVNESYNNFVDVIVKGRNLSRQRVLEIADGRVYSG 242

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
            +AK++GLID  G  EE  +   +L  ++    I+ 
Sbjct: 243 EQAKRMGLIDEFGDLEEATRYALSLSGEKEAMVIRY 278


>gi|238786163|ref|ZP_04630115.1| Protease 4 [Yersinia bercovieri ATCC 43970]
 gi|238712932|gb|EEQ04992.1| Protease 4 [Yersinia bercovieri ATCC 43970]
          Length = 281

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 119/243 (48%), Gaps = 5/243 (2%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEM 106
                L  +I +   D    A+I+ ++SPGGS  A E I   +  ++   KP++  +  M
Sbjct: 10  VGGDALAAQIRQARLDPKIKAVILRVNSPGGSVSASELIRSELSALRAANKPLVVSMGGM 69

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           AAS GY IS  +N IVA+ ++L GSIG+       +  L+ +GV    V +SP+    S 
Sbjct: 70  AASGGYWISTPANYIVASPSTLTGSIGIFGVINTFQNSLESIGVHTDGVATSPLAD-ISI 128

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
              + P+  QMMQ  +++ Y  F+ LV+ SR+   ++   ++ G +W G +AK  GL+D 
Sbjct: 129 TKNLPPEFSQMMQINIENGYKTFIDLVATSRHKTVEQVDQIAQGHVWIGFDAKSNGLVDQ 188

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +G  ++  + +  L   ++ +     + P      DL    +S+ ++  +P   Q  +  
Sbjct: 189 LGDFDDAVKKVAELAKLKTWQLNWFIDEPS---LSDLIFGQMSASVQAMLPTAIQAWLPA 245

Query: 287 LWA 289
             +
Sbjct: 246 PLS 248


>gi|45441763|ref|NP_993302.1| protease 4 [Yersinia pestis biovar Microtus str. 91001]
 gi|162421479|ref|YP_001606775.1| protease 4 [Yersinia pestis Angola]
 gi|229894836|ref|ZP_04510016.1| protease IV (signal peptide peptidase) [Yersinia pestis Pestoides
           A]
 gi|45436625|gb|AAS62179.1| protease IV [Yersinia pestis biovar Microtus str. 91001]
 gi|162354294|gb|ABX88242.1| signal peptide peptidase SppA, 67K type [Yersinia pestis Angola]
 gi|229702309|gb|EEO90328.1| protease IV (signal peptide peptidase) [Yersinia pestis Pestoides
           A]
          Length = 616

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 18/273 (6%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
           +        +A +   G I D            L  +I +   D    A+I+ ++SPGGS
Sbjct: 317 TPAPQQGEQIAVLFANGAIIDGPQPPGNVGGDTLAAQIRQARLDPKIKAVILRVNSPGGS 376

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +  ++   KP++  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 377 VSASELIRAELAALRAAHKPLVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 436

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  L  +GV    V +SP+    S    + P+  QMMQ  +++ Y  F+ LV+ SR+
Sbjct: 437 NTFQNSLASIGVHTDGVATSPLADV-SLTKALPPEFSQMMQINIENGYKTFIDLVATSRH 495

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256
              ++   ++ G +W G +AK  GL+D +G  ++  +    L   +   +    D     
Sbjct: 496 KTPEQVDQIAQGHVWIGLDAKSNGLVDQLGDFDDAVKKAAELAKLKTWQLNWFVD----- 550

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                DL    +S+ +   +P   QT +    +
Sbjct: 551 EPSLSDLILGQMSASVHAMLPAAIQTWLPAPLS 583



 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 98/293 (33%), Gaps = 44/293 (15%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIE 55
           +YF + S   +       + + G I D                             +++E
Sbjct: 41  IYFQFQSKPVEPVKGALLVNLSGVIVDQPAINNKLRQWGRELLGASSNRLQENSLFDIVE 100

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114
            I     DD+   L++SLS   G+  +  + I +A+++ ++    I  V +      Y +
Sbjct: 101 TIRLAKDDDNINGLVLSLSDLTGADQSSLQYIGKALREFRDTGKKIYAVGDSYNQTQYYL 160

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172
           +  +N I  +    V   G      Y K  L+ L V+    +    K+   P   ++++ 
Sbjct: 161 ASFANKIYLSPQGAVDLHGFASNNLYYKSLLENLKVTTNIFRVGTYKSAVEPMIRNDMSA 220

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLI 224
            A +     V   +  ++  VS +R +  ++           L          A    L+
Sbjct: 221 AAREADSRWVGGLWQNYLTTVSANRRLTPEQLFPGAAGVISGLQVAGGSQAKYALDSKLV 280

Query: 225 DVVGGQEEVWQSLYA------LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           D +  + EV  +L           D +   I D+ P       +   +  ++ 
Sbjct: 281 DQLAARPEVESALVEAFGWNKKTNDFNYISIYDYQPTPAPQQGEQIAVLFANG 333


>gi|319760562|ref|YP_004124500.1| signal peptide peptidase SppA [Candidatus Blochmannia vafer str.
           BVAF]
 gi|318039276|gb|ADV33826.1| signal peptide peptidase SppA [Candidatus Blochmannia vafer str.
           BVAF]
          Length = 619

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 12/227 (5%)

Query: 31  VEDNSPHVARIAIRGQI----------EDSQELIERIERISRDDSATALIVSLSSPGGSA 80
            ++N+  +A I I+G I               ++ +I     +    A+I+ ++SPGGS 
Sbjct: 321 TKNNNNQIAIICIQGTIIHGNNDIAGSTGGDTIVRKIRNARFNPKIKAIILRVNSPGGSV 380

Query: 81  YAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +A E I + I   +N  KP+I  +  +AAS GY IS  +N I+A+ ++L GSIGV     
Sbjct: 381 HASELIRQEIIATRNSGKPIIVSMGNIAASGGYWISTPANFIIASNSTLTGSIGVFGIIN 440

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
             +  LD +GV    V +SP+    S    +  +   MMQ  V++SY +F++ V++ R  
Sbjct: 441 TFEDSLDTIGVHSDEVNTSPVANL-SIAKALPNEFKNMMQLYVNTSYQYFIKTVAKFRCK 499

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
                  ++ G IW G +A K GLID +G  ++       L      
Sbjct: 500 TITDIDRVAQGHIWLGYDAIKNGLIDKIGDFDDAINKAAELAHLTEY 546



 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 88/261 (33%), Gaps = 38/261 (14%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIER 56
           YF   +     SP    + + G I D                             E+I  
Sbjct: 42  YFHIKNTKNTTSPSALILNLTGIIVDKPTTYTKFQKFSKQLFNINQSHIQENSLFEIIHI 101

Query: 57  IERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
           + +   D + T LI+ L +  G + +  E I +A+ + KN    I  + +      YL++
Sbjct: 102 LRQAKNDTNITGLILLLKNFSGGSQSSLEYIGKALYEFKNTGKPIYAISDHYDQIQYLLA 161

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPK 173
             +N I       V   G+     Y +  L  L ++    +    K+   PF    ++P+
Sbjct: 162 SYANKIYITPQGEVNLRGISTHKLYYQSLLKNLKINTHVFRVGSYKSAIEPFTRDNMSPQ 221

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLID 225
                   +   +  +++++S +RNI   +           L + +  T   A +   +D
Sbjct: 222 VRDEENIWIHQLWDQYLKIISLNRNITTQQIFPGINKIIDELYEMQGDTAYYALQKKWVD 281

Query: 226 VVGGQEEVWQSLYALGVDQSI 246
            +    ++  ++         
Sbjct: 282 EISSYSDIENTMKKTFGTNKN 302


>gi|89255457|ref|YP_512818.1| peptidase [Francisella tularensis subsp. holarctica LVS]
 gi|115313986|ref|YP_762709.1| protease [Francisella tularensis subsp. holarctica OSU18]
 gi|167009293|ref|ZP_02274224.1| S49 family protease [Francisella tularensis subsp. holarctica
           FSC200]
 gi|169656469|ref|YP_001427444.2| S49 family peptidase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|254366865|ref|ZP_04982903.1| peptidase, S49 family [Francisella tularensis subsp. holarctica
           257]
 gi|254368438|ref|ZP_04984455.1| serine peptidase [Francisella tularensis subsp. holarctica FSC022]
 gi|290953102|ref|ZP_06557723.1| S49 family peptidase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295313688|ref|ZP_06804271.1| S49 family peptidase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89143288|emb|CAJ78449.1| Peptidase [Francisella tularensis subsp. holarctica LVS]
 gi|115128885|gb|ABI82072.1| S49 family protease [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134252693|gb|EBA51787.1| peptidase, S49 family [Francisella tularensis subsp. holarctica
           257]
 gi|157121332|gb|EDO65533.1| serine peptidase [Francisella tularensis subsp. holarctica FSC022]
 gi|164551537|gb|ABU60488.2| peptidase, S49 family [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 307

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 114/254 (44%), Gaps = 16/254 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSA 80
           S  S  ++  PH+A I + G I D      + + + ++    + S   +IV ++SPGGS 
Sbjct: 46  SLFSSSKELVPHIALIKVNGVIADDAEANAERINQSLDDAYANKSVKGVIVEINSPGGSP 105

Query: 81  YAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
              + I+  +Q ++++    P+      + AS GY I+  +  I A + ++ GSIGV+  
Sbjct: 106 VQSDEIYSHMQYLQHKYPTIPMYAVCTNVCASGGYYIAAGAKDIYANKMTITGSIGVIGS 165

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
                  +DKLG+  ++  S   K    PFS   P+     ++++D ++  F+  V +SR
Sbjct: 166 GFGFTGLMDKLGIERRTYTSGENKDFLDPFSPQKPEQTAQFKELLDQTHQVFIAAVEKSR 225

Query: 198 NIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
                         G  ++G +A+++GLID     +++    +      +   I D+  P
Sbjct: 226 GDRLKDKNIDTTFSGEPFSGIQAQQMGLIDGFASVDQIRNEKF------NNIDIVDYTRP 279

Query: 256 KNYWFCDLKNLSIS 269
            ++       L  S
Sbjct: 280 LDFLTAVSHKLGNS 293


>gi|115380005|ref|ZP_01467055.1| signal peptide peptidase SppA, 67K type [Stigmatella aurantiaca
           DW4/3-1]
 gi|310820408|ref|YP_003952766.1| Signal peptide peptidase SppA, 36K type [Stigmatella aurantiaca
           DW4/3-1]
 gi|115362984|gb|EAU62169.1| signal peptide peptidase SppA, 67K type [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393480|gb|ADO70939.1| Signal peptide peptidase SppA, 36K type [Stigmatella aurantiaca
           DW4/3-1]
          Length = 828

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/270 (24%), Positives = 125/270 (46%), Gaps = 18/270 (6%)

Query: 37  HVARIAIRGQIED---------------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
            +A + + G I                 ++ +   + R   D +  A+++ + S GG   
Sbjct: 534 RIAIVPVLGTIAGGKSREDPLGATRIAGAETVALALYRAQMDPAVVAIVLRVDSGGGDVL 593

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
           A + ++RA+ + K  KPVI  + ++AAS GY  + A++ I A  T+L GSIGV +  P +
Sbjct: 594 ASDLMYRAVLEAKKVKPVIASMGDVAASGGYYAAMAADEIFANPTTLTGSIGVFYLKPAL 653

Query: 142 KPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           K  L DKLG++ +++  +P+      +    P+  + +Q  VD++Y  F+   +E+R + 
Sbjct: 654 KGLLEDKLGITQQTLPRAPLADLLGLWRPWTPEEQRAVQAWVDATYDTFITYAAEARKLE 713

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV--DQSIRKIKDWNPPKNY 258
             +   L+ GR+W+G +A   GL+D +GG  E   +  + G        ++  +   + +
Sbjct: 714 KAQVDTLARGRVWSGKDAHARGLVDRLGGLAEAVAAARSRGGASASEDVEVVVYGEARGF 773

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                    + + L           +QGL 
Sbjct: 774 LSSLGGEPGVLARLLPEPSSPLPPGLQGLL 803



 Score = 77.7 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 94/227 (41%), Gaps = 7/227 (3%)

Query: 35  SPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93
           SP +A + I G     + L+  +E  ++D+    +++ +   GG      E + +A+ ++
Sbjct: 301 SPSLALLGISGPDPYLR-LMRFLELATQDERLRGVVLKVEGLGGVDWGRAEELRQAVLRL 359

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           +     +  +       GY ++ A++ + A   S     G+      V   ++KLGVS  
Sbjct: 360 RAAGKKVLALVLSCDDKGYFVASAADRLYALPASSFLINGLSAGVTSVGGTMEKLGVSWD 419

Query: 154 SVKSSPMK--AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K   E     +++    + +   +D+   W+ + V   R +P ++        
Sbjct: 420 VARVGEYKTAPEQLTRRDMSEAERETLNAWLDTQVDWYEQAVVSERKLPVERLREAWKVG 479

Query: 212 IWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           +     A+ +GLID +  GQ+E+ Q L  L         ++++P   
Sbjct: 480 LIPPPVAQSLGLIDGILQGQKELEQRLEQL--IPGASYAENYSPRDE 524


>gi|51596414|ref|YP_070605.1| protease 4 [Yersinia pseudotuberculosis IP 32953]
 gi|145598269|ref|YP_001162345.1| protease 4 [Yersinia pestis Pestoides F]
 gi|186895459|ref|YP_001872571.1| protease 4 [Yersinia pseudotuberculosis PB1/+]
 gi|51589696|emb|CAH21326.1| protease IV [Yersinia pseudotuberculosis IP 32953]
 gi|145209965|gb|ABP39372.1| protease IV [Yersinia pestis Pestoides F]
 gi|186698485|gb|ACC89114.1| signal peptide peptidase SppA, 67K type [Yersinia
           pseudotuberculosis PB1/+]
          Length = 616

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 18/273 (6%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
           +        +A +   G I D            L  +I +   D    A+I+ ++SPGGS
Sbjct: 317 TPAPQQGEQIAVLFANGAIIDGPQTPGNVGGDTLAAQIRQARLDPKIKAVILRVNSPGGS 376

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +  ++   KP++  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 377 VSASELIRAELAALRAAHKPLVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 436

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  L  +GV    V +SP+    S    + P+  QMMQ  +++ Y  F+ LV+ SR+
Sbjct: 437 NTFQNSLASIGVHTDGVATSPLADV-SLTKALPPEFSQMMQINIENGYKTFIDLVATSRH 495

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256
              ++   ++ G +W G +AK  GL+D +G  ++  +    L   +   +    D     
Sbjct: 496 KTPEQVDQIAQGHVWIGLDAKSNGLVDQLGDFDDAVKKAAELAKLKTWQLNWFVD----- 550

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                DL    +S+ +   +P   QT +    +
Sbjct: 551 EPSLSDLILGQMSASVHAMLPAAIQTWLPAPLS 583



 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 98/293 (33%), Gaps = 44/293 (15%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIE 55
           +YF + S   +       + + G I D                             +++E
Sbjct: 41  IYFQFQSKPVEPVKGALLVNLSGVIVDQPAINNKLRQWGRELLGASSNRLQENSLFDIVE 100

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114
            I     DD+   L++SLS   G+  +  + I +A+++ ++    I  V +      Y +
Sbjct: 101 TIRLAKDDDNINGLVLSLSDLTGADQSSLQYIGKALREFRDTGKKIYAVGDSYNQTQYYL 160

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172
           +  +N I  +    V   G      Y K  L+ L V+    +    K+   P   ++++ 
Sbjct: 161 ASFANKIYLSPQGAVDLHGFASNNLYYKSLLENLKVTTNIFRVGTYKSAVEPMIRNDMSA 220

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLI 224
            A +     V   +  ++  VS +R +  ++           L          A    L+
Sbjct: 221 AAREADSRWVGGLWQNYLTTVSANRRLTPEQLFPGAAGVISGLQVAGGSQAKYALDSKLV 280

Query: 225 DVVGGQEEVWQSLYA------LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           D +  + EV  +L           D +   I D+ P       +   +  ++ 
Sbjct: 281 DQLAARPEVESALVEAFGWNKKTNDFNYISIYDYQPTPAPQQGEQIAVLFANG 333


>gi|56476731|ref|YP_158320.1| protease IV [Aromatoleum aromaticum EbN1]
 gi|56312774|emb|CAI07419.1| Protease IV [Aromatoleum aromaticum EbN1]
          Length = 613

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/237 (28%), Positives = 114/237 (48%), Gaps = 10/237 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSL 73
                 +   +   HVA +  +G I D            L   I     D+   AL++ +
Sbjct: 308 YLAVVRATRPEQDDHVAVLVAQGAIIDGSDTQSAVGGDSLAHLIRMAREDERVKALVLRV 367

Query: 74  SSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
            SPGGSA+A E I R ++  +   KPV+  +  +AAS GY I+  +  I A+  SL GSI
Sbjct: 368 DSPGGSAWASEVIRRELELTREAGKPVVASMSSVAASGGYWIATGAEEIFASPASLTGSI 427

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           G+   +P +   LDKLGV+   V + P+     P   + P A + +Q  ++  Y  F+  
Sbjct: 428 GIFALFPELAGALDKLGVNTDGVATGPLAGAFDPRRPLEPAAAKTIQLGIEHGYRRFLET 487

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V+++R++   +   ++ GR+WTG  A K+GL+D +GG E    +  +    +    +
Sbjct: 488 VAKARDMSATEVDTVARGRVWTGEAATKLGLVDQLGGLEAAVAAAASRAGLKRYETV 544



 Score = 70.4 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 76/209 (36%), Gaps = 13/209 (6%)

Query: 52  ELIERIERISRDDSATALIVSLS--SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +L+E +E    D    AL++      P G       +  AI   +     +    E    
Sbjct: 91  DLLEAVEAARDDTRIKALVIETDRLGPTG-LSKLAELRAAIVAFRQSGKPVFARGERFTQ 149

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y ++ A++ +       V   G+     Y    LDKLGV +   +    KA   PF  
Sbjct: 150 GQYYLASAADEVHVGPDGFVLLQGLARYISYFAEALDKLGVKMHVFRVGEYKAFSEPFTR 209

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW----TGAEA----K 219
           ++++    +  +D+++  +      +  SR +  +K     +        TG +A    +
Sbjct: 210 NDMSEADREASRDLLEGLWTGVREDLIASRRLAPEKLDAYVNAYPAALAATGGDAVSAAR 269

Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
             GLID    ++E  + L A        K
Sbjct: 270 DAGLIDRASTRDEWRELLKARVGASEDGK 298


>gi|254786960|ref|YP_003074389.1| signal peptide peptidase SppA, 67K type [Teredinibacter turnerae
           T7901]
 gi|237686224|gb|ACR13488.1| signal peptide peptidase SppA, 67K type [Teredinibacter turnerae
           T7901]
          Length = 618

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 5/235 (2%)

Query: 44  RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITE 102
            G I  S  L E I R   DDS  A+++ + S GGSA+A E I + I   +   KPV   
Sbjct: 337 NGVI-GSASLTELIRRARDDDSIAAIVLRIDSGGGSAFASEVIRQEILNTRKSGKPVYIS 395

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
           +  MAAS GY ++ A + I A  ++L GSIGV    P +   L+KLGV    V ++ +  
Sbjct: 396 MGSMAASGGYWVASAGDEIWATPSTLTGSIGVWGLIPNLANALNKLGVHSDGVGTTELAD 455

Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVG 222
              P   ++  A Q++Q  ++  Y  F+ +V+E+R+        ++ GR+W+G  A  +G
Sbjct: 456 IYHPDRPLSAPAKQLIQSGINDVYDHFLNIVAEARDSDPASVHEIAQGRVWSGEAAASLG 515

Query: 223 LIDVVGGQEEVWQSLYAL--GVDQSIRKIK-DWNPPKNYWFCDLKNLSISSLLED 274
           L+D +G   +   ++          +++IK +  P +      ++ +S+S L++ 
Sbjct: 516 LVDKLGTLHDTLDAVAEHIGAGSYRVKQIKRELTPTEEIMHALMQEVSVSGLVDQ 570



 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 84/235 (35%), Gaps = 14/235 (5%)

Query: 52  ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           +L++ I   + DD  T+++++     GG     E + +A++  K     I    +  +  
Sbjct: 89  DLVDTINHAATDDRITSMVLNLTKFAGGGISKMEELGQALEHFKAAGKPIYAYGDNLSQQ 148

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS-- 168
            Y ++  ++ I   E   V   G      Y K   DKL V     +    K    PF   
Sbjct: 149 QYFLASFADTIYLNEMGSVLITGFGMYQNYFKDAADKLSVDFHVFRVGQYKDAVEPFMRN 208

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--------GAEAKK 220
           +++P + +     ++  ++ +V  V+ +R +                         +A +
Sbjct: 209 DMSPASREHNSRWLNELWNTYVNRVTGNRQLAPGAIDSYLASLTDANETNEDSQAEKALQ 268

Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRKIKD---WNPPKNYWFCDLKNLSISSLL 272
            GL+D +  + +V Q L          +  D   +   +     +L +   +  L
Sbjct: 269 AGLVDKLVSRVDVRQLLAEKVGASDDGETYDAIGYEEYRQATQLELPSGGKTLGL 323


>gi|222478889|ref|YP_002565126.1| signal peptide peptidase SppA, 36K type [Halorubrum lacusprofundi
           ATCC 49239]
 gi|222451791|gb|ACM56056.1| signal peptide peptidase SppA, 36K type [Halorubrum lacusprofundi
           ATCC 49239]
          Length = 311

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 112/241 (46%), Gaps = 20/241 (8%)

Query: 37  HVARIAIRGQI---------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
           + A++ + G I                 + +++E+IE    D+   AL+V L++PGG   
Sbjct: 45  NTAKVTVSGPIRRDTGRPSPLSRAGGATADDVVEQIEAADEDEDVEALVVELNTPGGEVL 104

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
             + I RA        P +    +  AS GY I+   + + A + SLVGSIGV+   P  
Sbjct: 105 PSDDIRRAAADF--DGPTLAYATDTCASGGYWIASGCDELWARDASLVGSIGVVGSRPNA 162

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
               DKLG+S +   +   K    P  E+     + +Q ++D  Y  FV  VSE R++  
Sbjct: 163 AGLADKLGISYEQFTAGEYKDAGVPLREIEEDEREYLQGIIDGYYEQFVETVSEGRDMDP 222

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
           +     ++ R++ G++A ++GL+D +G +++V   L  L    +  +I ++ P +     
Sbjct: 223 EAIRE-TEARVYLGSDAAEIGLVDELGTEDDVEDRLEEL--IDTEPEIHEFTPKRGLAER 279

Query: 262 D 262
            
Sbjct: 280 L 280


>gi|22126048|ref|NP_669471.1| protease 4 [Yersinia pestis KIM 10]
 gi|108807515|ref|YP_651431.1| protease 4 [Yersinia pestis Antiqua]
 gi|108811791|ref|YP_647558.1| protease 4 [Yersinia pestis Nepal516]
 gi|149365915|ref|ZP_01887950.1| protease IV [Yersinia pestis CA88-4125]
 gi|165927734|ref|ZP_02223566.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939383|ref|ZP_02227931.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009364|ref|ZP_02230262.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166210495|ref|ZP_02236530.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401415|ref|ZP_02306912.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419969|ref|ZP_02311722.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426564|ref|ZP_02318317.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|218929262|ref|YP_002347137.1| protease 4 [Yersinia pestis CO92]
 gi|229897580|ref|ZP_04512736.1| protease IV (signal peptide peptidase) [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229898225|ref|ZP_04513373.1| protease IV (signal peptide peptidase) [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902086|ref|ZP_04517207.1| protease IV (signal peptide peptidase) [Yersinia pestis Nepal516]
 gi|270490735|ref|ZP_06207809.1| signal peptide peptidase SppA, 67K type [Yersinia pestis KIM D27]
 gi|294503792|ref|YP_003567854.1| protease IV [Yersinia pestis Z176003]
 gi|21959000|gb|AAM85722.1|AE013819_8 protease IV, a signal peptide peptidase [Yersinia pestis KIM 10]
 gi|108775439|gb|ABG17958.1| protease IV [Yersinia pestis Nepal516]
 gi|108779428|gb|ABG13486.1| protease IV [Yersinia pestis Antiqua]
 gi|115347873|emb|CAL20793.1| protease IV [Yersinia pestis CO92]
 gi|149292328|gb|EDM42402.1| protease IV [Yersinia pestis CA88-4125]
 gi|165912724|gb|EDR31353.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920348|gb|EDR37625.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991919|gb|EDR44220.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207675|gb|EDR52155.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166961664|gb|EDR57685.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049111|gb|EDR60519.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054440|gb|EDR64252.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229680982|gb|EEO77077.1| protease IV (signal peptide peptidase) [Yersinia pestis Nepal516]
 gi|229688791|gb|EEO80859.1| protease IV (signal peptide peptidase) [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229693917|gb|EEO83966.1| protease IV (signal peptide peptidase) [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|262365774|gb|ACY62331.1| protease IV [Yersinia pestis D182038]
 gi|270339239|gb|EFA50016.1| signal peptide peptidase SppA, 67K type [Yersinia pestis KIM D27]
 gi|294354251|gb|ADE64592.1| protease IV [Yersinia pestis Z176003]
          Length = 616

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 18/273 (6%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
           +        +A +   G I D            L  +I +   D    A+I+ ++SPGGS
Sbjct: 317 TPAPQQGEQIAVLFANGAIIDGPQPPGNVGGDTLAAQIRQARLDPKIKAVILRVNSPGGS 376

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +  ++   KP++  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 377 VSASELIRAELAALRAAHKPLVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 436

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  L  +GV    V +SP+    S    + P+  QMMQ  +++ Y  F+ LV+ SR+
Sbjct: 437 NTFQNSLASIGVHTDGVATSPLADV-SLTKALPPEFSQMMQINIENGYKTFIDLVATSRH 495

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256
              ++   ++ G +W G +AK  GL+D +G  ++  +    L   +   +    D     
Sbjct: 496 KTPEQVDQIAQGHVWIGLDAKSNGLVDQLGDFDDAVKKAAELAKLKTWQLNWFVD----- 550

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                DL    +S+ +   +P   QT +    +
Sbjct: 551 EPSLSDLILGQMSASVHAMLPAAIQTWLPAPLS 583



 Score = 82.0 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 98/293 (33%), Gaps = 44/293 (15%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIE 55
           +YF + S   +       + + G I D                             +++E
Sbjct: 41  IYFQFQSKPVEPVKGALLVNLSGVIVDQPAINNKLRQWGRELLGASSNRLQENSLFDIVE 100

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114
            I     DD+   L++SLS   G+  +  + I +A+++ ++    I  V +      Y +
Sbjct: 101 TIRLAKDDDNINGLVLSLSDLTGADQSSLQYIGKALREFRDTGKKIYAVGDSYNQTQYYL 160

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172
           +  +N I  +    V   G      Y K  L+ L V+    +    K+   P   ++++ 
Sbjct: 161 ASFANKIYLSPQGAVDLHGFASNNLYYKSLLENLKVTTNIFRVGTYKSAVEPMIRNDMSA 220

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLI 224
            A +     V   +  ++  VS +R +  ++           L          A    L+
Sbjct: 221 AAREADSRWVGGLWQNYLTTVSANRRLTPEQLFPGAAGVISGLQVAGGSQAKYALDSKLV 280

Query: 225 DVVGGQEEVWQSLYA------LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           D +  + EV  +L           D +   I D+ P       +   +  ++ 
Sbjct: 281 DQLAARPEVESALVEAFGWNKKTNDFNYISIYDYQPTPAPQQGEQIAVLFANG 333


>gi|294614153|ref|ZP_06694074.1| periplasmic serine protease [Enterococcus faecium E1636]
 gi|291593003|gb|EFF24591.1| periplasmic serine protease [Enterococcus faecium E1636]
          Length = 341

 Score =  127 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 128/276 (46%), Gaps = 21/276 (7%)

Query: 30  HVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSP 76
              D++  + ++ + G I                +  +E+++ +  D +   + + ++SP
Sbjct: 53  EEGDSTQKIVKLTVDGTIAAGGSSGLFASEGYNHENFMEQLKAVEEDPTVKGIFLEVNSP 112

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG  Y    I + +  ++     P+   +  MAAS GY IS  ++ I A E ++ GSIGV
Sbjct: 113 GGGVYESAEIAKKLDTIRKEHDIPMYVSMKNMAASGGYYISAQADKIFATEETVTGSIGV 172

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +         L+KLGV   +VKS  +K           +   ++Q  +DS+Y  FVR+VS
Sbjct: 173 IMSGLNYSGLLEKLGVEDTTVKSGALKDMGLGTRPETKEEEAVLQAYIDSAYQRFVRIVS 232

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           E RN   +    ++DGRI+ G +AK+VGL+D +G  E+  Q++      +   ++ +++ 
Sbjct: 233 EGRNKSEEAVKKIADGRIYDGVQAKEVGLVDELGFPEDALQAMRKEQKLEDA-ELVEYSS 291

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
             + +        ++         +K ++   + ++
Sbjct: 292 ASSGFASTWLGSKLA-----EFQGLKSSETSQILSI 322


>gi|88859293|ref|ZP_01133933.1| protease IV, a signal peptide peptidase [Pseudoalteromonas tunicata
           D2]
 gi|88818310|gb|EAR28125.1| protease IV, a signal peptide peptidase [Pseudoalteromonas tunicata
           D2]
          Length = 624

 Score =  127 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/253 (25%), Positives = 122/253 (48%), Gaps = 12/253 (4%)

Query: 36  PHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             VA +  +G I D                + +   DD   A+++ + S GGS +A E I
Sbjct: 325 EKVAVVVAKGNIVDGKRKAGEIGGDSTSALLRKARLDDKVKAVVLRIDSGGGSMFASELI 384

Query: 87  FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
              +  +K   KPVI  +  +AAS GY I+ A+N I AA +++ GSIG+       +  L
Sbjct: 385 RAEVLALKAAGKPVIASMSSVAASGGYWIASAANEIWAAPSTITGSIGIFGTVMTFENSL 444

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            +LGV    V ++ M    SP  E+NP+   M+Q  ++  Y+ F+ +V+E+R +  ++  
Sbjct: 445 ARLGVYSDGVSTTEMAG-FSPMRELNPQLGNMIQMSIERGYNRFLTIVAEARGMSIEEVD 503

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            ++ GR+W   +AK++GL+D +G +++  ++   L        +       +     +K 
Sbjct: 504 HIAQGRVWIATQAKELGLVDHLGNKQDAIEAAAKLASL-DHYDVITVEQTLSPRELFMKE 562

Query: 266 LSISSLLEDTIPL 278
              ++ ++  I +
Sbjct: 563 FLSNAHVQSLIAI 575


>gi|261378542|ref|ZP_05983115.1| signal peptide peptidase SppA [Neisseria cinerea ATCC 14685]
 gi|269145092|gb|EEZ71510.1| signal peptide peptidase SppA [Neisseria cinerea ATCC 14685]
          Length = 328

 Score =  127 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 132/290 (45%), Gaps = 21/290 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57
           K I      L L+ L    F         E N+PH A + + G+I +  ++ ++++    
Sbjct: 45  KNIWRAVGTLILIALLAGIFRKDETALRLEGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLI 114
           E   ++  A A+I+  +SPGGS       F  I+++K + P I       +M AS  Y I
Sbjct: 105 EAAYKNPQAKAIIIRANSPGGSPVVSNTAFEEIRRLKAQHPNIPVYLVAEDMCASGCYYI 164

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I A  +S+VGSIGV+         ++K+GV  +   +   K    PFS   P+ 
Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATELMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            ++ ++++   +  F++ V   R       +   +  GR++TGA+A+KVGLID +G    
Sbjct: 225 SKIWEEMLTGIHGEFIKAVKAGRGSRLKFQQYPDVFSGRVYTGADAQKVGLIDGLGNVYS 284

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282
           V +             + D+    +  F  L    + + L+  +  + QT
Sbjct: 285 VAR------NVVKAPDLVDYTRQDD--FGTLLGRRLGAELKAGVREVLQT 326


>gi|167623955|ref|YP_001674249.1| signal peptide peptidase SppA [Shewanella halifaxensis HAW-EB4]
 gi|167353977|gb|ABZ76590.1| signal peptide peptidase SppA, 67K type [Shewanella halifaxensis
           HAW-EB4]
          Length = 613

 Score =  127 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/269 (24%), Positives = 125/269 (46%), Gaps = 16/269 (5%)

Query: 35  SPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           +  V  I  +G I            +   E + +   DDS  A+++ + SPGGSA+A E 
Sbjct: 324 NDKVGIIVAKGNILNGSQPAGQIGGKSTSELLRQARFDDSVKAVVLRVDSPGGSAFASEE 383

Query: 86  IFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           I + +  +K   KP+I  +   AAS GY IS +++ I A  T+L GSIG+       +  
Sbjct: 384 IRQEVLAIKAANKPIIVSMGSYAASGGYWISASADYIYATPTTLTGSIGIFGMVTTFEDS 443

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L  +GV    V +S      S    ++P+   ++Q  ++  Y  F+ LV+  R++  D  
Sbjct: 444 LASIGVHTDGVGTSEWAG-FSVTKGLSPQIQAIIQRHIERGYQDFISLVASERDMSLDYV 502

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPKNYWFCD 262
             ++ GR+WTG +A ++GL+D +G  ++       +   +      I+    P+  +  +
Sbjct: 503 DSIAQGRVWTGRKALELGLVDGLGELQDAVTKAAQMAKLEQYDTEVIERELSPQEQFIQE 562

Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
           +   + S + +      + + ++ + + W
Sbjct: 563 MLASASSYMPQ---SFAQSSVLETVLSQW 588



 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 92/287 (32%), Gaps = 39/287 (13%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------- 51
           L+K+    +   ++ + +V  +    VE        + + G I D +             
Sbjct: 22  LRKLFLNLIFFGVIAIIIVSLTTDDGVEVEDGSALVLNLSGVIVDQKRQVDPIEAAMKSG 81

Query: 52  ------------ELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRKP 98
                       +++  IE  + D     +++ L    G+     ++I  AI+  K    
Sbjct: 82  NEADGSGEILLADVLTVIENAATDTRINQMVLDLGMLHGTGISKLQSIGNAIESFKATGK 141

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            +           Y ++  ++ +       V   G+     Y K  LDKL ++    +  
Sbjct: 142 TVVANGNWYGQNQYFLASFADKVYLNPQGSVEIEGLARYRLYFKSALDKLKINAHVFRVG 201

Query: 159 PMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLS 208
             K+   PF   +++  A +    +++  +  +   V+ +R I  +            L 
Sbjct: 202 TFKSAVEPFIRDDMSDAAKEANLVLLNDLWQSYADTVAANRGIDSNNLSLSADNYLAELD 261

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEE---VWQSLYALGVDQSIRKIKDW 252
                +   A  +  +D +   +E   V         D    K  D+
Sbjct: 262 KANGKSAEMALNMKWVDGLKTTDEFRLVMVDAVGKSADGDSYKHIDF 308


>gi|162456619|ref|YP_001618986.1| protease IV [Sorangium cellulosum 'So ce 56']
 gi|161167201|emb|CAN98506.1| Protease IV [Sorangium cellulosum 'So ce 56']
          Length = 896

 Score =  127 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/274 (25%), Positives = 112/274 (40%), Gaps = 18/274 (6%)

Query: 35  SPHVARIAIRGQIEDSQE---------------LIERIERISRDDSATALIVSLSSPGGS 79
           SP VA + + G + D +                +   + R   D S  A+++ + + GGS
Sbjct: 575 SPKVALVYLDGDMIDGESRSIPFVGVKLAGSYTVAGALRRAREDQSVRAVVLRVETGGGS 634

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
             A + I R        KP++  +   AAS GY  S A   I A+ +S+ GSIGV +   
Sbjct: 635 TLAADVILREAILTARVKPLVVSMGSSAASGGYYASVAGAPIFASRSSITGSIGVFYGKV 694

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            V   L KLGVSI++ +SSP     S +        + +   V   Y  FV  + E+R++
Sbjct: 695 DVTGLLQKLGVSIETFRSSPRADAESLYRPYTDDEREQLGVKVKQFYDRFVARIVENRHM 754

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
             ++   L  G++WTGA+A +  LID +GG  +       LG       I+         
Sbjct: 755 KAEEVDALGRGQVWTGAQALERRLIDRLGGLRQAIAEARRLGQLPDDAPIQSLPEEDTSL 814

Query: 260 FC---DLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
                 L   S  +  E     +    +    A+
Sbjct: 815 LGYALGLVGFSAQAQGELARATIPPVMLDAARAL 848



 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 87/244 (35%), Gaps = 8/244 (3%)

Query: 21  TVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSS-PG 77
            V   S+S         V R+ +       +   L++++ R++ D   + + + L + P 
Sbjct: 328 GVALRSFSEPGVRLPARVVRVRLDSTPGVRRHTRLLQQLWRLAEDPEVSGVALVLRAEPA 387

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
            S    E +  AI+ +++    +    E A      +  +++ I       +   G+   
Sbjct: 388 SSLAHAEEVSDAIRNLRSHGKKVLCHLEDAGGRSLHVCSSADAIAMNPAGGLRFAGMSSS 447

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK--AVQMMQDVVDSSYHWFVRLVSE 195
           Y Y    L+KLGV    V+    K     F+            Q ++D     F+  VS 
Sbjct: 448 YFYFGGLLNKLGVQADIVRIGAHKLAAEQFARETSTRVGKDDHQALLDQLSDAFLAEVSA 507

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE---VWQSLYALGVDQSIRKIKDW 252
            R IP  +         +   EA++ GL+D++   +E   V   +             D 
Sbjct: 508 GRRIPVPELERRIARGPFLAQEARQSGLVDMLAYDDELGRVIDEVMGRASRVVDDDPPDE 567

Query: 253 NPPK 256
            P +
Sbjct: 568 APER 571


>gi|110597071|ref|ZP_01385360.1| signal peptide peptidase SppA, 67K type:signal peptide peptidase
           SppA, 36K type [Chlorobium ferrooxidans DSM 13031]
 gi|110341262|gb|EAT59727.1| signal peptide peptidase SppA, 67K type:signal peptide peptidase
           SppA, 36K type [Chlorobium ferrooxidans DSM 13031]
          Length = 602

 Score =  127 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 109/268 (40%), Gaps = 14/268 (5%)

Query: 31  VEDNSPHVARIAIRGQIE--------------DSQELIERIERISRDDSATALIVSLSSP 76
             +    +A I + G I               D + L   ++    D    AL++ + SP
Sbjct: 296 KGEGDERIALITLSGPIVRTAGESALGMGEGVDVESLKHSLDAALDDKKVKALVLRIDSP 355

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GG A A   + + +     +KP++  +  +AAS GY+ + A   + A+  ++ GSIGV  
Sbjct: 356 GGDALASAEMLQMLDSAAVKKPLVVSMSGVAASGGYMAALAGKTVFASPLTITGSIGVYA 415

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
             P +   + K G+    V    +    SPF  ++ +A Q         Y  F+  V+ S
Sbjct: 416 LKPEISALVAKTGLGRDVVTRGRLADANSPFKPLDKEAYQKFVAASGEIYDDFIGKVARS 475

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R +P      ++ GR+W+G  A K GL+D  GG  +   +   L      +  +    P+
Sbjct: 476 RRMPLTAVDSVAGGRVWSGTRALKAGLVDRTGGLFDAIHAARLLAKMDMSKNPRIILYPE 535

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKV 284
              + ++      + L   I    + ++
Sbjct: 536 QKSWIEMLVQGNRAGLPGMIGAAFKKQL 563



 Score = 56.5 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 82/192 (42%), Gaps = 3/192 (1%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
             Q+L+  ++  + D+    L++ +     S      +  +I+KV++R   +T       
Sbjct: 74  SLQDLLFILDHAAADERVKELLLEIGGLHASPAKISELRSSIEKVRSRGKKVTAFLSSPE 133

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
            + YL++ A + IV      +   G+  +  +    L K+G+  ++ +    K+   PF+
Sbjct: 134 DSDYLLASACDAIVMERGGYLLLDGLKAETLFYTTPLGKIGIRFQAAQWKQYKSGIEPFT 193

Query: 169 EV--NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLID 225
               + +  + +  ++D  Y  ++   S  R I  D    + D   + + + AK  GL+D
Sbjct: 194 RTGASREYFEQIGGLLDEVYDDYLGYASRRRGISRDSLSGIIDRIALISDSRAKTFGLVD 253

Query: 226 VVGGQEEVWQSL 237
                 E+ ++L
Sbjct: 254 SAASSWELKRAL 265


>gi|294669763|ref|ZP_06734829.1| hypothetical protein NEIELOOT_01663 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308329|gb|EFE49572.1| hypothetical protein NEIELOOT_01663 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 351

 Score =  127 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/264 (23%), Positives = 108/264 (40%), Gaps = 15/264 (5%)

Query: 32  EDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
           + +  H A I + G I        + L + +E    +     +I+  +SPGGS       
Sbjct: 93  KQSKEHTAVIRLNGVIGGGYQDQVEMLRDGLEAAYANGKVKGIIIRANSPGGSPVISNTA 152

Query: 87  FRAIQKVKNRKPVI---TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           F  ++++K     I       +M AS  Y I+ A++ I A  +SLVGSIGV+        
Sbjct: 153 FEEVRRLKAEHKDIPLYVVTEDMCASGCYYIAAAADKIYADPSSLVGSIGVIGGSFDFTE 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            +DK+GV  +   +   K    PFS   P+   + Q +++  +  F++ V   R      
Sbjct: 213 LMDKIGVKRRLKTAGSNKGMGDPFSPETPEQQAIWQQMLNDIHGEFIKAVKSGRGSRLKD 272

Query: 204 TL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               +  GR++TG EAKK GLID  G    V + +          ++ D+ P ++     
Sbjct: 273 NDPEIFSGRVYTGLEAKKNGLIDDFGNIYSVARDVVQ------APELVDYTPEEDDLARA 326

Query: 263 LKNLSISSLLEDTIPLMKQTKVQG 286
           +       +       ++     G
Sbjct: 327 ISRRLNGEVQNQVREGLQNLAKPG 350


>gi|194333353|ref|YP_002015213.1| signal peptide peptidase SppA, 36K type [Prosthecochloris aestuarii
           DSM 271]
 gi|194311171|gb|ACF45566.1| signal peptide peptidase SppA, 36K type [Prosthecochloris aestuarii
           DSM 271]
          Length = 596

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/279 (21%), Positives = 116/279 (41%), Gaps = 20/279 (7%)

Query: 29  SHVEDNSPHVARIAIRGQIE--------------DSQELIERIERISRDDSATALIVSLS 74
            +       +A I I G I               D Q L E ++    ++S  A+++ + 
Sbjct: 292 PYKPGTKDGIAVITISGVIVQSAGDMPGGTEPGSDEQSLREALDAALDEESVKAIVLRID 351

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGG A A   + + +     +KP++  +  +AAS GY+ + A++ I A   ++ GSIGV
Sbjct: 352 SPGGDALASANMLQMLDSANVQKPIVASMSGVAASGGYMAALAADSIFADPLTVTGSIGV 411

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
               P ++   +K+G+  + V         + F  ++        +     Y  F+  V+
Sbjct: 412 YALKPNIQGLQEKIGLRREVVTRGKNADAYTLFKPLDEDGFAKFMETTGWIYDDFINKVA 471

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS--IRKIKDW 252
           E R++  ++   ++ GRIW+G  A   GL+D  GG  E  ++   +    S     +K +
Sbjct: 472 EHRDMKPEEVDAVAGGRIWSGKAAVTAGLVDRTGGLREAVEAAQRMAGIDSSLAPTLKFY 531

Query: 253 NPPKNYWFCDLKNLSI--SSLLEDTIP--LMKQTKVQGL 287
              K      L+   +   +L    +P   +    +  +
Sbjct: 532 QGRKGMMDYILEGGVLTPGTLFGKKLPESSITARSLDTI 570



 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 101/248 (40%), Gaps = 21/248 (8%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI------------------EDSQEL 53
           +++L L     ++   ++           + + G++                     Q+L
Sbjct: 16  FIILFLAAGVGIFRMITARQSLPEKFALVVTLSGELKETADPQPPLPLLPDMRSLSLQDL 75

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
           I  +E   +D+  T +++ + +   ++     +  AIQ+       +T     A      
Sbjct: 76  IFLLEDAGKDERVTQVVLDIDAIRFASAQIRQLQEAIQRTSASGTPVTGFLHAAGDQDLW 135

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV--N 171
           ++ A + ++A   +     G+  +  +    L+K+GVS ++ +    K+   P++    +
Sbjct: 136 LASACDTLIAERGNQFLLDGLRAEMLFYAGTLEKIGVSFQAAQWKAWKSGIEPYTRENAS 195

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLIDVVGGQ 230
           P+ ++ +  ++D  Y  +   VS+ R I  +    + D   + +  +A+++ L+D V G 
Sbjct: 196 PEYLEQIGTMLDGIYDDYTAYVSQQRGISQEAYKNIIDEKTVVSAEQARQLRLVDRVSGF 255

Query: 231 EEVWQSLY 238
            E  ++L 
Sbjct: 256 WEYTENLK 263


>gi|57241950|ref|ZP_00369890.1| protease IV (PspA) [Campylobacter upsaliensis RM3195]
 gi|57017142|gb|EAL53923.1| protease IV (PspA) [Campylobacter upsaliensis RM3195]
          Length = 293

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 72/277 (25%), Positives = 132/277 (47%), Gaps = 7/277 (2%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63
           ++  I T +     + L +  FS SS V     ++ RI ++G+I D+  ++E+I     D
Sbjct: 14  IISYINTYFKTFLFLLLLIWLFSPSSSVSIA--NLERIDLKGEILDTGAVLEKIINAKND 71

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
            +   ++  + SPGG+      +  AI+ +K +KPVI+ V    AS  YL   A + I A
Sbjct: 72  PNIKGVLFFIDSPGGAFAPSMELALAIKDLKAQKPVISYVAGTMASGSYLAGVAVDKIYA 131

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
              + +GSIGV+ Q   +     K+GV  +++K+   K   +   E + +    +Q +++
Sbjct: 132 NPAAFIGSIGVIAQGMNISELAQKIGVKEQTIKAGTFKEAGTFTREWSEEERAYLQRLIN 191

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
           +SY  FV  V++ R +  D+    +D R++   EAK +GLID +   E+  + L  L   
Sbjct: 192 NSYMLFVEFVAKERGLKVDEKEKWADARVFLANEAKNLGLIDSLSNYEQAKKELEILSKV 251

Query: 244 -----QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
                +   KI  +    N       +    +LL+++
Sbjct: 252 VNPVWKEADKIDQFLEKLNQQSVQFFSTLSKNLLQNS 288


>gi|153948435|ref|YP_001400955.1| protease 4 [Yersinia pseudotuberculosis IP 31758]
 gi|152959930|gb|ABS47391.1| signal peptide peptidase SppA, 67K type [Yersinia
           pseudotuberculosis IP 31758]
          Length = 616

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 18/273 (6%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
           +        +A +   G I D            L  +I +   D    A+I+ ++SPGGS
Sbjct: 317 TPAPQQGEQIAVLFANGAIIDGPQTPGNVGGDTLAAQIRQARLDPKIKAVILRVNSPGGS 376

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +  ++   KP++  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 377 VSASELIRAELAALRAAHKPLVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 436

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  L  +GV    V +SP+    S    + P+  QMMQ  +++ Y  F+ LV+ SR+
Sbjct: 437 NTFQNSLASIGVHTDGVATSPLADV-SLTKALPPEFSQMMQINIENGYKTFIDLVATSRH 495

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256
              ++   ++ G +W G +AK  GL+D +G  ++  +    L   +   +    D     
Sbjct: 496 KTPEQVDQIAQGHVWIGLDAKSNGLVDQLGDFDDAVKKAAELAKLKTWQLNWFVD----- 550

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                DL    +S+ +   +P   QT +    +
Sbjct: 551 EPSLSDLILGQMSASVHAMLPAAIQTWLPAPLS 583



 Score = 82.0 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 98/293 (33%), Gaps = 44/293 (15%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIE 55
           +YF + S   +       + + G I D                             +++E
Sbjct: 41  IYFQFQSKPVEPVKGALLVNLSGVIVDQPAINNKLRQWGRELLGASSNRLQENSLFDIVE 100

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114
            I     DD+   L++SLS   G+  +  + I +A+++ ++    I  V +      Y +
Sbjct: 101 TIRLAKDDDNINGLVLSLSDLTGADQSSLQYIGKALREFRDTGKKIYAVGDSYNQTQYYL 160

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172
           +  +N I  +    V   G      Y K  L+ L V+    +    K+   P   ++++ 
Sbjct: 161 ASFANKIYLSPQGAVDLHGFASNNLYYKSLLENLKVTTNIFRVGTYKSAVEPMIRNDMSA 220

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLI 224
            A +     V   +  ++  VS +R +  ++           L          A    L+
Sbjct: 221 AAREADSRWVGGLWQNYLTTVSANRRLTPEQLFPGAAGVISGLQVAGGSQAKYALDSKLV 280

Query: 225 DVVGGQEEVWQSLYA------LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           D +  + EV  +L           D +   I D+ P       +   +  ++ 
Sbjct: 281 DQLAARPEVESALVEAFGWNKKTNDFNYISIYDYQPTPAPQQGEQIAVLFANG 333


>gi|300723417|ref|YP_003712720.1| protease IV, a signal peptide peptidase [Xenorhabdus nematophila
           ATCC 19061]
 gi|297629937|emb|CBJ90557.1| protease IV, a signal peptide peptidase [Xenorhabdus nematophila
           ATCC 19061]
          Length = 629

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 135/290 (46%), Gaps = 22/290 (7%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSP-HVARIAIRGQI---------EDSQELIERIERISRDD 64
            + +++             N+  ++A I   G I          DS  L+E++     + 
Sbjct: 308 FNYISIYDYIAQNPVQESSNNDSNIAVIIAEGAILEGKQSSGVVDSDALVEQLREARHNP 367

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV--------ITEVHEMAASAGYLISC 116
           +  A+++ ++SPGGS  A E I   +   +  K          +  +  +AAS GY IS 
Sbjct: 368 NIKAIVLRVNSPGGSIGASELIRAELVAARYDKENNGKNAKPVVVSMGGLAASGGYWIST 427

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
            ++ I+A   +L GSIGV       +  L+ +GV+   + ++P+    +    +N     
Sbjct: 428 PADYIIADPNTLTGSIGVFGVLQTFEKTLNYIGVNADGISTTPLADISAT-KGLNQAVSD 486

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           ++Q  ++SSY+ F+ LV+++RN P ++   ++ GR+W G +AKK GL+D +G  ++  + 
Sbjct: 487 VIQLSIESSYNKFIALVAKARNKPVNEIDNMAQGRVWDGLDAKKQGLVDQLGDFDDAVKK 546

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
              L   + +    DW  P+   F +   + +++     +P M Q+ +  
Sbjct: 547 AAELANIKHVS--LDWMQPE-LSFSEKIMVGLTTSAHAFLPNMMQSMLPA 593



 Score = 75.8 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 91/246 (36%), Gaps = 11/246 (4%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQKVKNRKPVITEVHEMAASA 110
           ++++ I R   D   T +++ L+   G+       I +AI + K     +  +++     
Sbjct: 99  DVVDSIRRAKNDPKITGMVLKLNEFTGADQPSIKYIGKAINEFKTTGKPVFAINDHYTQP 158

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168
            Y ++  +N I  +   +V   G      Y K  LD L VS    +    K+   P   +
Sbjct: 159 QYYLASFANEIYLSPQGVVDLHGFSTNQLYYKSLLDTLKVSTHIFRVGTYKSAVEPMLRN 218

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKK 220
            ++ +A +     ++  ++ ++  ++ +R I  D+           L          A +
Sbjct: 219 NMSEEAREADSLWLNRMWNNYLSTIAINRGISADQVFPGATQFIEKLHKSGGDFALYAYQ 278

Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
             L+  +  +  + + +         +K  ++    +Y   +    S ++     + + +
Sbjct: 279 NKLVTHIEPRNVIEKKMTDTFGWNEEQKHFNYISIYDYIAQNPVQESSNNDSNIAVIIAE 338

Query: 281 QTKVQG 286
              ++G
Sbjct: 339 GAILEG 344


>gi|118496733|ref|YP_897783.1| S49 family serine peptidase [Francisella tularensis subsp. novicida
           U112]
 gi|208779996|ref|ZP_03247339.1| peptidase, S49 (protease IV) family [Francisella novicida FTG]
 gi|254372099|ref|ZP_04987592.1| S49 family protease [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254375246|ref|ZP_04990726.1| peptidase [Francisella novicida GA99-3548]
 gi|118422639|gb|ABK89029.1| serine peptidase, S49 family [Francisella novicida U112]
 gi|151569830|gb|EDN35484.1| S49 family protease [Francisella novicida GA99-3549]
 gi|151572964|gb|EDN38618.1| peptidase [Francisella novicida GA99-3548]
 gi|208744000|gb|EDZ90301.1| peptidase, S49 (protease IV) family [Francisella novicida FTG]
          Length = 307

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 114/254 (44%), Gaps = 16/254 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSA 80
           S  S  ++  PH+A I + G I D      + + + ++    + S   +IV ++SPGGS 
Sbjct: 46  SLFSSSKELVPHIALIKVNGVIADDAEANAERINQSLDDAYANKSVKGVIVEINSPGGSP 105

Query: 81  YAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
              + I+  +Q ++++    P+     ++ AS GY I+  +  I A + ++ GSIGV+  
Sbjct: 106 VQSDEIYSHMQYLQHKYPTIPMYAVCTDVCASGGYYIAAGAKDIYANKMTITGSIGVIGS 165

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
                  +DKLG+  ++  S   K    PFS   P+     + ++D ++  F+  V +SR
Sbjct: 166 GFGFTGLMDKLGIERRTYTSGENKDFLDPFSPQKPEQTAQFKKLLDQTHQVFIAAVEKSR 225

Query: 198 NIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
                         G  ++G +A+++GLID     +++    +      +   I D+  P
Sbjct: 226 GDRLKDKNIDTTFSGEPFSGIQAQQMGLIDGFASVDQIRNEKF------NNIDIVDYTRP 279

Query: 256 KNYWFCDLKNLSIS 269
            ++       L  S
Sbjct: 280 LDFLTAVSHKLGNS 293


>gi|56708744|ref|YP_170640.1| peptidase [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110671216|ref|YP_667773.1| peptidase [Francisella tularensis subsp. tularensis FSC198]
 gi|134302771|ref|YP_001122739.1| signal peptidase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|187932300|ref|YP_001892285.1| serine peptidase, S49 family [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|224457951|ref|ZP_03666424.1| serine peptidase, S49 family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371355|ref|ZP_04987356.1| S49 family protease [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875608|ref|ZP_05248318.1| signal peptidase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|54112669|gb|AAV28968.1| NT02FT0343 [synthetic construct]
 gi|56605236|emb|CAG46379.1| Peptidase [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110321549|emb|CAL09762.1| Peptidase [Francisella tularensis subsp. tularensis FSC198]
 gi|134050548|gb|ABO47619.1| Signal peptidase, S49 family [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151569594|gb|EDN35248.1| S49 family protease [Francisella tularensis subsp. tularensis
           FSC033]
 gi|187713209|gb|ACD31506.1| serine peptidase, S49 family [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254841607|gb|EET20043.1| signal peptidase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282160065|gb|ADA79456.1| Signal peptidase, S49 family protein [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 307

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 115/254 (45%), Gaps = 16/254 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSA 80
           S  S  ++  PH+A I + G I D      + + + ++    + S   +IV ++SPGGS 
Sbjct: 46  SLFSSSKELVPHIALIKVNGVIADDAEANAERINQSLDDAYANKSVKGVIVEINSPGGSP 105

Query: 81  YAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
              + I+  +Q ++++    P+     ++ AS GY I+  +  I A + ++ GSIGV+  
Sbjct: 106 VQSDEIYSHMQYLQHKYPTIPMYAVCTDVCASGGYYIAAGAKDIYANKMTITGSIGVIGS 165

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
                  +DKLG+  ++  S   K    PFS   P+     ++++D ++  F+  V +SR
Sbjct: 166 GFGFTGLMDKLGIERRTYTSGENKDFLDPFSPQKPEQTAQFKELLDQTHQVFIAAVEKSR 225

Query: 198 NIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
                         G  ++G +A+++GLID     +++    +      +   I D+  P
Sbjct: 226 GDRLKDKNIDTTFSGEPFSGIQAQQMGLIDGFASVDQIRNEKF------NNIDIVDYTRP 279

Query: 256 KNYWFCDLKNLSIS 269
            ++       L  S
Sbjct: 280 LDFLTAVSHKLGNS 293


>gi|294673079|ref|YP_003573695.1| signal peptide peptidase SppA, 67K type [Prevotella ruminicola 23]
 gi|294473747|gb|ADE83136.1| signal peptide peptidase SppA, 67K type [Prevotella ruminicola 23]
          Length = 626

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 65/281 (23%), Positives = 118/281 (41%), Gaps = 19/281 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ---------------ELIERIERISRDDSATALIVS 72
            S  ++N   +A     G I DS+                + + + +++ DD   A++  
Sbjct: 326 KSKQKENGGKIAVYYAYGSIVDSEAMNMLEGGGHCIVGKTVADDLRKLADDDDVKAVVFR 385

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           ++S GGSA A E I  A++ +K +KPV+  +   AAS GY IS  +N I+A  T++ GSI
Sbjct: 386 VNSGGGSAVASEYIRHAVKLIKAKKPVVVSMGGAAASGGYWISSPANYIIAEPTTITGSI 445

Query: 133 GVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           G+    P V   + DKLG++   VK+       +           M Q     +  +   
Sbjct: 446 GIFGLIPNVSGLVTDKLGITFDGVKTHQFAGYETELVAGKDTQEIMRQMQNYINRGYQNF 505

Query: 192 L--VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           L  V+E R +  ++   +  GR+W  ++A  + L+D +G  ++  +    L   Q     
Sbjct: 506 LNVVAEGRGLKPEQVNEIGQGRVWLASDALGIKLVDKLGSLDDAVKKAAELAKLQE-YHT 564

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
             +     ++   +      S L+  I  +       L  +
Sbjct: 565 AAYPAEPGWFEKLMNKEPKGSYLDGQIRELLGDAYLPLMQI 605



 Score = 98.1 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 94/277 (33%), Gaps = 30/277 (10%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------------- 47
           +L  I   + ++SLV +     S S+  +     V  + + G +                
Sbjct: 45  ILSLITGLFFVISLVGMVA---SDSAATKVKENSVFVLKLSGSVNERSEEGTPFDDFLGL 101

Query: 48  -----EDSQELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVIT 101
                    +LI  I +   +D    + +   S G  S    + +  A++  K     I 
Sbjct: 102 GDTGSMGLDDLIASIRKAKDNDDIKGIYIQGGSAGFDSPATAQQLRDALKDFKTSGKWIV 161

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                 + A Y ++  ++ I       V   G+  +  Y K   DKLG+  +  K    K
Sbjct: 162 AYANNYSQASYYVATVADKIYLNGQGSVDLRGLGGKSEYYKGLYDKLGIKYQVAKVGKYK 221

Query: 162 AEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW---TGA 216
           +       + ++    +  Q  +   + ++++ ++E R +  D+   L +  +       
Sbjct: 222 SYVESNTLTGMSDYDREQRQAYLGGIWKYWLKEMAEGRKVKADELDKLVNDSLLAFTPAE 281

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           +  K  L+D V   EE+   +          +I    
Sbjct: 282 QLIKSKLVDKVLFPEEIKAEIKNRLKLGKNDEINQLT 318


>gi|87201072|ref|YP_498329.1| signal peptide peptidase SppA, 67K type [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87136753|gb|ABD27495.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 625

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 126/278 (45%), Gaps = 12/278 (4%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLS 74
            +        +   +A + + G+I D            + + I+ +++ D    L++ + 
Sbjct: 298 VYLADKPAAKDGSAIAVVTVAGEIVDGDAGPGVAGGDRIADLIDGVTQADDYAGLVLRVD 357

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVI-TEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           SPGGS  A E I  A+++V+ +   +   +  +AAS GY +S  +  I A  +++ GSIG
Sbjct: 358 SPGGSVMASERIRAAVERVRAKGLPVAVSMGSVAASGGYWVSTPAQRIFAEPSTITGSIG 417

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V    P  +  L + GV+ + V+++P+  +P     +NP+   +MQ  V+ +Y  F+ LV
Sbjct: 418 VFAVLPTFEQTLPQYGVTTEQVRTTPLSGQPDLLGGLNPQVSALMQGQVEQTYTRFLGLV 477

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS--IRKIKD 251
           +++R         ++ GRIW G  A+++GL+D  GG ++    +             ++D
Sbjct: 478 AKARGKSPADIDRIAQGRIWDGGTARQLGLVDQFGGLDDAVAWVAKQAKADKWHAEYVED 537

Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
              P   +   ++           +      + QGL A
Sbjct: 538 EPSPVAQFLRQMETGEAPEARAHDLAGALAAQQQGLVA 575



 Score = 78.5 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 78/212 (36%), Gaps = 9/212 (4%)

Query: 51  QELIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           ++L   IE  + D    A+++ L S  GGSA    +I  A+ +V+  +  +     +   
Sbjct: 81  RDLTRAIEAAATDKRIKAVVLDLESFGGGSAVHLSSIGAAMDRVRAARKPVFVRSLIYTD 140

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
               ++  ++         V   G      + K  +DKL  ++   K    K+   P+  
Sbjct: 141 DAMQLAAHASEAWVDPMGGVAITGPGGTMLFYKGLIDKLKANVHIFKVGTYKSAVEPYMR 200

Query: 170 V--NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV------LSDGRIWTGAEAKKV 221
              +P+A + MQ V  + +  +   V ++R               ++D        A K 
Sbjct: 201 AQSSPEAREAMQAVYGAIWQNWQDEVRKARPKADLALATTDPAKWVADNGGDAAQAALKS 260

Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           GLID VG +    + +  +        +  + 
Sbjct: 261 GLIDRVGDRIAFGKRVAEVVGADDQGPLGSFK 292


>gi|167523164|ref|XP_001745919.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775720|gb|EDQ89343.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1557

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 65/302 (21%), Positives = 122/302 (40%), Gaps = 29/302 (9%)

Query: 9   KTRYVM-------LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QE 52
           KTR+V+        SL  + V   + SS        V  I   G I              
Sbjct: 286 KTRFVVPEKRYARFSLKKIGVAISAKSS-------RVGVIRCGGTIVSGKGQRGSFGQDN 338

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +I  +    R     A+++ + S GGSA A + I R + ++   KPV+     +AAS GY
Sbjct: 339 IIPMLWEAHRRADIDAVVLRVDSSGGSALASDLIAREVARLAAVKPVVASFGTLAASGGY 398

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS--SPMKAEPSPFSEV 170
            IS  ++ IVA   S+ GSIGV    P  +  +D +      + S   P+      ++ +
Sbjct: 399 YISALAHTIVADPMSITGSIGVAMLRPNGQKLIDDMMGVRHHLISEPGPLARVNDFYAPM 458

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
           +P+    +    +  YH F+++V + R +  ++    + G++++  +A++ GL+D +G  
Sbjct: 459 SPEVRAYLDKRSEEVYHAFLKIVCQGRGMSLEEAEKHAKGQVFSAEQAQQRGLVDQLGSL 518

Query: 231 EEVWQSLYALG----VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           ++       L     V       +   P  ++        +   +     P + Q    G
Sbjct: 519 QDAVDQAAKLAQRRQVTPGQTLYEVLRPKMSFLQRQFMGSNKFVIDALGFPNINQLLASG 578

Query: 287 LW 288
           + 
Sbjct: 579 IV 580


>gi|237654702|ref|YP_002891016.1| signal peptide peptidase SppA, 67K type [Thauera sp. MZ1T]
 gi|237625949|gb|ACR02639.1| signal peptide peptidase SppA, 67K type [Thauera sp. MZ1T]
          Length = 613

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 110/225 (48%), Gaps = 10/225 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68
           +         +      +  VA I  +G I D                I     D+   A
Sbjct: 303 IEAEAYLALAADDTRHAAGSVAVIVAQGTIVDGAEPAGVVAGDTFARLIREAREDEDIKA 362

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           L++ + SPGGSA+A E I R ++   +  KPVI  +  +AAS GY I+  ++ I AA ++
Sbjct: 363 LVLRIDSPGGSAWASELIRRELELTRQAGKPVIASMSSVAASGGYWIATGADEIWAAPST 422

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           + GSIG+   +P     L +LG+ +  V ++P+     P   ++P A + MQ  ++  Y 
Sbjct: 423 VTGSIGIFGLFPEFSEPLRRLGIGVDGVATAPLAGALDPRRPLDPAAAEAMQLGIEHGYR 482

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            F+ +V+++R +   +   ++ GR+WTG  A  +GL+D +G  ++
Sbjct: 483 RFLEVVAQARKLTVAEVDAVARGRVWTGEAASGLGLVDKLGSLDD 527



 Score = 73.1 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 91/281 (32%), Gaps = 35/281 (12%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           ++ V++ +    ++  L  L   +F     V+  S     +   G I +           
Sbjct: 20  LDLVVRGVFYALLIFGLGVLVSFFFHPEPEVQAGSA--LVLRPVGTIVEQAELEPPLALL 77

Query: 52  -------------ELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRK 97
                        +L++ + +   D    AL++      G        +  AI   K   
Sbjct: 78  RAGGAPAGQLRLADLVDAVRKARDDARIAALVIETDELVGGGFSKLAELRAAIADFKASG 137

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +    E    + Y ++  ++ +  +    V   G+     Y +  LDKLGV +   + 
Sbjct: 138 KPVLARGERFTQSQYYLASVADELHLSPDGFVLLRGLARYGTYFRDALDKLGVKVHVFRV 197

Query: 158 SPMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD------ 209
              K+   PF+  +++ +  +  +D++D  + +    ++ SR +         +      
Sbjct: 198 GEYKSFSEPFTRSDMSDEDREATRDLLDGLWRFMRDDIAASRKLAPAAIDAHVNDIRGAL 257

Query: 210 --GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                     A   GL+D    ++E    L          K
Sbjct: 258 AAAGGDAAKAALAAGLVDRFSTRDEWRARLIEAVGTDHEGK 298


>gi|171915041|ref|ZP_02930511.1| peptidase, U7 family protein [Verrucomicrobium spinosum DSM 4136]
          Length = 343

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 67/270 (24%), Positives = 122/270 (45%), Gaps = 15/270 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLS 74
            +   +    + RI I G I                + +   +E+ S D S  A+++ ++
Sbjct: 56  EAGAAETKDKIVRIDIEGIIASGPAGDLFSEGGMNVEAIQRALEQASEDKSVKAIVIRVN 115

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGG   A + ++ A++K   RK V+  +  +AAS GY ++C ++ IVA ET+L  SIGV
Sbjct: 116 SPGGEVTASDNLYNAVKKAAARKKVVVYMDSIAASGGYYLACGASKIVANETTLTASIGV 175

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           + Q         K+G+   +  S   K   S    +     + +Q +V + Y  FV +V+
Sbjct: 176 IIQSLNYSQTFGKVGLETMTFASGKFKDTLSGSRPMREDEREYIQSLVSAMYDKFVGIVA 235

Query: 195 ESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD-W 252
           ++RNI   +    ++DGR+ TG +A +  L+D +G  E+ +     LG  +    +K   
Sbjct: 236 KARNIDEAQLRTGVADGRVVTGKQALEYKLVDQLGYVEDAYALAKELGSAKDAMVVKYSL 295

Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282
            P        +     SS  +  + +  + 
Sbjct: 296 TPSLAQLLGIMGKAQASSGGKVELDVSDRL 325


>gi|257865950|ref|ZP_05645603.1| protease/peptidase [Enterococcus casseliflavus EC30]
 gi|257872283|ref|ZP_05651936.1| protease/peptidase [Enterococcus casseliflavus EC10]
 gi|257799884|gb|EEV28936.1| protease/peptidase [Enterococcus casseliflavus EC30]
 gi|257806447|gb|EEV35269.1| protease/peptidase [Enterococcus casseliflavus EC10]
          Length = 343

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 118/255 (46%), Gaps = 15/255 (5%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPG 77
             D    + R+++ G I  S                +E +  I  D +   +++ +++PG
Sbjct: 57  AGDQDNRIVRLSLEGTIASSSSGGLFTTESYDHQRFLEELRMIQEDPTIGGILMEVNTPG 116

Query: 78  GSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           G  Y    I R + K+K    P+   +  MAAS GY IS  ++ I A + ++ GSIGV+ 
Sbjct: 117 GGVYESAEIARELAKIKELGIPMYVSMKNMAASGGYYISAGADKIFATDETITGSIGVIM 176

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                    +KLG+   + KS  +K   S   E      +++Q  VD++Y  FV++V+E 
Sbjct: 177 SGLNYAGLFEKLGIEDNTYKSGALKDVGSSTREPTEADKEVLQTYVDNAYGRFVKIVAEG 236

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R +  +    ++DGRI+ G +A  VGL+D +G  E+   ++ A    +   +I  ++   
Sbjct: 237 RGMTEEAVRKIADGRIYDGQQAVSVGLVDEIGFPEDTLAAMQADLGLEDA-EIFSYDVSS 295

Query: 257 NYWFCDLKNLSISSL 271
             +       S++ L
Sbjct: 296 TGFASTWLGSSLAEL 310


>gi|256845156|ref|ZP_05550614.1| signal peptide peptidase SppA, 67K type [Fusobacterium sp.
           3_1_36A2]
 gi|256718715|gb|EEU32270.1| signal peptide peptidase SppA, 67K type [Fusobacterium sp.
           3_1_36A2]
          Length = 551

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 121/273 (44%), Gaps = 13/273 (4%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70
                 ++      +   +A I + G+I          +   ++E+++ +    +   L+
Sbjct: 267 FLEYVSAYKRKKNKSKNTIAVINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLV 326

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + ++SPGGSA   E I++ ++K+    P+   + ++ AS GY I+     + A   +L G
Sbjct: 327 LRINSPGGSALESEKIYQKLKKL--EVPIYISMGDLCASGGYYIATVGKKLFANPVTLTG 384

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+  YP     ++KL V+++             FS+++ ++ + +   ++  Y  F 
Sbjct: 385 SIGVVVLYPEFTETINKLKVNMEGFSKGKGFDIFDVFSKLSEESKEKIIYSMNEVYSEFK 444

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
             V ++RNI  +    ++ GR+W G +AK+ GL+D +G   +   SL      +  +   
Sbjct: 445 EHVIQARNISEEDLEKIAGGRVWLGNKAKENGLVDELGSLNDCIDSLAKDLELKDFK--L 502

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
            +   +      +  +    +  D I  ++  K
Sbjct: 503 TYIRGRKSIMEIVSAMKPQFIKSDIIGKIEMLK 535



 Score = 54.6 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/286 (19%), Positives = 115/286 (40%), Gaps = 16/286 (5%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
           F+L K K +  + SL  +  V F+ +  VED    ++ I++   +   + L++ +E ++ 
Sbjct: 27  FILGKFKNKDKV-SLKGVKTVVFNLNELVEDYM--ISTISVNKAL-SHEALLKALEHLAD 82

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           D     +I+ +     S    E I    +K+   K +I         +  +   A+ I +
Sbjct: 83  DKKIEKIIIDIDEIDLSRVHIEEIKEIFEKLSVDKEIIAIGTTFDEYSYQVALLANKIYM 142

Query: 123 AA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQ 179
              + S +   G  ++ PY K  L  LGV++ ++     K   E     +++ +  + + 
Sbjct: 143 LNTKQSCLYFRGYEYKEPYFKNILATLGVTVNTLHIGDYKVAGESFSNDKMSEEKKESLI 202

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG--AEAKKVGLIDVVGGQEEVWQSL 237
           ++ ++ +  F+ LV E R    D T  +  G +      +A ++GLID +   EE     
Sbjct: 203 NIKETLFQNFINLVKEKRK--VDITNEILSGDLIFANSEKAIQLGLIDGLSTYEE----- 255

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
             +  ++      ++           KN      LE  I   +  +
Sbjct: 256 IGIDYNEDTVDFLEYVSAYKRKKNKSKNTIAVINLEGEIDTRESKE 301


>gi|305665196|ref|YP_003861483.1| putative protease IV [Maribacter sp. HTCC2170]
 gi|88709948|gb|EAR02180.1| putative protease IV [Maribacter sp. HTCC2170]
          Length = 586

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 65/253 (25%), Positives = 126/253 (49%), Gaps = 10/253 (3%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSP 76
           S    +      VA +  +G+I   +          +   + +   DD   A+++ + SP
Sbjct: 291 SNKKSLNKGDDKVAVVFAQGEILYGEGGPDIIGQGIISRALVKARDDDRVKAIVLRVDSP 350

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GGSA   + I+R ++  K +KPV+  +  +AAS GY I+  ++ I A  T++ GSIGV  
Sbjct: 351 GGSALTSDIIWREVELAKAKKPVVVSMGNVAASGGYYIAAGADKIFAEPTTITGSIGVFG 410

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
             P V      +G++ + V ++    + S F  +     +++Q+ ++ +Y  F+  VS+ 
Sbjct: 411 TIPNVNELAADIGINAEQVGTNKNSVDYSLFEPMTENFRKVVQEGIEETYETFLDRVSKG 470

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           RNI   +   ++ GR+W+G +AKK+GLID +G  ++   +  A   +     IK +   K
Sbjct: 471 RNISIAEADSMAQGRVWSGVDAKKLGLIDELGNMDDAIAA-AAQLAEIESYGIKKYPKYK 529

Query: 257 NYWFCDLKNLSIS 269
             +   ++++S +
Sbjct: 530 TGFEKFMEDMSGA 542



 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 91/268 (33%), Gaps = 22/268 (8%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED------------------ 49
           I    + +  +    +       V      +  + ++  I D                  
Sbjct: 16  IAFGIMFVMFLLFISLIGGAEDSVVIKDNSILELQLKQPINDYVGNNEADPFTGFFGQAQ 75

Query: 50  -SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
              E++  I+    D     + +S +         +AI +A++  K     I    +   
Sbjct: 76  GLDEVLHAIKVAKDDSDIKGISISNNFIMAGLAQTQAIRKALKDFKESGKFIYTYSDFYM 135

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167
              Y ++  S+ I       +   G+  +  + K   DK GV ++ ++    K+   PF 
Sbjct: 136 QKDYYLASVSDSIFLNPVGGLDFKGLSTEVLFYKDLQDKTGVKMEVIRHGKYKSAVEPFL 195

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLID 225
            +E++      +++++ S +   V  +SE RN+  +   +++D         A   GLID
Sbjct: 196 ANEMSDANRTQIKELISSLWDTMVADISEGRNLSVENVNIIADTLGGRLPKYAVASGLID 255

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWN 253
            V   +E    L       +  +I    
Sbjct: 256 GVVFFDEYEAKLRLATSLSAEDEINYVT 283


>gi|297583628|ref|YP_003699408.1| signal peptide peptidase SppA, 36K type [Bacillus selenitireducens
           MLS10]
 gi|297142085|gb|ADH98842.1| signal peptide peptidase SppA, 36K type [Bacillus selenitireducens
           MLS10]
          Length = 328

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 63/267 (23%), Positives = 120/267 (44%), Gaps = 23/267 (8%)

Query: 37  HVARIAIRGQIEDS------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
            +A I + G I+D             ++ + ++E  +       +I+ +++PGG     +
Sbjct: 56  RIAVIQVEGMIQDGGAGGLFSVGYDHRQTLRQLEYAAESTDIYGVILQVNTPGGGVVESD 115

Query: 85  AIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            +   I  ++    KPV   +   AAS GY IS  ++ I A   +  GSIGV+ Q   V 
Sbjct: 116 ELHNRIVAIQEEFDKPVYAVMGGQAASGGYYISAPADKIYANAQTFTGSIGVIIQSLNVA 175

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-NIPY 201
              ++ GVS+++  S   K   SP  EV     +++ ++V  SY  FV +V   R N+  
Sbjct: 176 GLAEEWGVSLETFTSGEFKDILSPTKEVTDDERELLNEIVMDSYEQFVDVVDNGRENLSR 235

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
           D+   L+DGRI+TG +A + GL+D +G ++   + +        +  ++        +  
Sbjct: 236 DEVYELADGRIFTGNQAVENGLVDEIGNRDAAIEDMIEELGRGDLSVVE--------FGG 287

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
                S++ L    +P  +   ++ + 
Sbjct: 288 AAGFASLAGLGSQVLPGSEARLIENVL 314


>gi|119505648|ref|ZP_01627718.1| protease IV [marine gamma proteobacterium HTCC2080]
 gi|119458460|gb|EAW39565.1| protease IV [marine gamma proteobacterium HTCC2080]
          Length = 611

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 64/251 (25%), Positives = 120/251 (47%), Gaps = 12/251 (4%)

Query: 27  WSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPG 77
               +E+  P +A I I G++           S  ++ ++ER        A+++ ++SPG
Sbjct: 315 AEKEIEETKPRIAVIPIEGELIPGESGRGFAGSDTVVSQLERALEQPDLRAVVLRINSPG 374

Query: 78  GSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GS +A E I + I ++K    PV+  +  +AAS GY I+  ++ I+A  +++ GSIGV  
Sbjct: 375 GSVFASEVIRQKILEIKAADLPVVASMGAVAASGGYYIAADADEILAQPSTITGSIGVFA 434

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
            +P V+      GV+   V +S +       + V+    +++  ++   Y  FV LV+  
Sbjct: 435 AFPTVEKLYQWAGVTSDGVSTSSLATAARVDTGVSDTGRRIINSMISKVYDDFVTLVALG 494

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP-- 254
           R   +++   ++ GR+W+G +A  VGL+D +GG +    S   L   +         P  
Sbjct: 495 RGKTWEEINSVAGGRVWSGEDALSVGLVDNLGGLQAALDSAAGLAEIEDFDTFYIGTPIS 554

Query: 255 PKNYWFCDLKN 265
           P+  +F  +  
Sbjct: 555 PEQRFFEQIGK 565



 Score = 67.3 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 77/206 (37%), Gaps = 11/206 (5%)

Query: 53  LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
           + + I+  + DD  TALI+ L +  G S    + +  AI+  K+    +    +  + + 
Sbjct: 93  VKKAIKEAAADDRITALILDLEALNGPSISHVQELKAAIEIFKSAGKPVIATGDYYSQSQ 152

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SE 169
           YL++  +  ++      +   G      YV+  LD + +++   +    K+   P+   +
Sbjct: 153 YLLASQATQVLLHPEGGIEVSGFAVYRNYVRKLLDNVYLTMNVFRVGESKSAVEPYLRDD 212

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL----VLSDGRIWTGAEAKKV---- 221
           ++    +++   +   +  + +LV   R +             D    +G +A  +    
Sbjct: 213 MSGLEREVVGQWLGDVWRSYTQLVEAPRQMDAGFVDQFINEFPDRLEISGGDAAALMLEA 272

Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIR 247
           G +D +    +  + L          
Sbjct: 273 GFVDELVTHSQRDEMLADWVGATDED 298


>gi|315638324|ref|ZP_07893504.1| signal peptide peptidase SppA [Campylobacter upsaliensis JV21]
 gi|315481591|gb|EFU72215.1| signal peptide peptidase SppA [Campylobacter upsaliensis JV21]
          Length = 293

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 71/277 (25%), Positives = 132/277 (47%), Gaps = 7/277 (2%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63
           ++  I T +     + L V  FS SS V     ++ RI ++G+I D+  ++E+I     D
Sbjct: 14  IISYINTYFKTFLFLLLLVWLFSPSSSVSVA--NLERIDLKGEILDTGAVLEKIINAKND 71

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
            +   ++  + SPGG+      +  AI+ +K +KPVI+      AS  YL   A++ I A
Sbjct: 72  PNIKGVLFFIDSPGGAFAPSMELALAIKDLKAQKPVISYAAGTMASGSYLAGVAADKIYA 131

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
              + +GSIGV+ Q   +     K+G+  +++K+   K   +   E + +    +Q +++
Sbjct: 132 NPAAFIGSIGVIAQGMNISELAQKIGIKEQTIKAGTFKEAGTFTREWSEEERAYLQRLIN 191

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
           +SY  FV  V++ R +  D+    +D R++   EAK +GLID +   E+  + L  L   
Sbjct: 192 NSYMLFVEFVAKERGLKVDEKEKWADARVFLANEAKNLGLIDSLSNYEQAKKELEILSKV 251

Query: 244 -----QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
                +   KI  +    N       +    +LL+++
Sbjct: 252 ANPVWKEADKIDQFLEKLNQQSVQFFSTLSKNLLQNS 288


>gi|307250517|ref|ZP_07532462.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306857459|gb|EFM89570.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 618

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 129/266 (48%), Gaps = 12/266 (4%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                +A + + GQI           S  +++ + +   DD+   +I+ ++SPGGSA A 
Sbjct: 321 QAEHKIAVVNVEGQIISGESDASSAGSDTIVKLLRKAREDDNVRGVILRVNSPGGSALAS 380

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + +++++   KPV+  +  MAAS GY IS  S+ I+A+ T++ GSIG+       +
Sbjct: 381 EIIRQEVEEIQKAGKPVVASMGGMAASGGYWISATSDKIIASPTTITGSIGIFGLATSFE 440

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                LGV+   +  SP  +  SP   +  +  +++Q  +++ Y  F+ LVS  RN+   
Sbjct: 441 KTAKNLGVTEDGISLSPFASS-SPLKTLPKEQAEVIQISIENGYDRFLELVSRGRNMSKQ 499

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261
               ++ G++W+G +A K GL+D +G     + ++  L    +      +    ++ W  
Sbjct: 500 AVDKIAQGQVWSGEDALKHGLVDELGDFTAAYSAVIELVNQRRKANNEAEIEHFRSQWMI 559

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287
           D  +    SLL+ +    + +   GL
Sbjct: 560 DSDDSLFGSLLKGSKLKFQLSSWLGL 585



 Score = 82.7 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 96/289 (33%), Gaps = 46/289 (15%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV----------ARIAIRGQIEDSQ-- 51
           + + I+   + L  +   +V F++ + +   S               + + G + D+   
Sbjct: 11  IFRCIREFVMSLFFIIFVLVCFAFLALINQESGSTKHTNFIEKGALTLNLDGYLADNHDK 70

Query: 52  -----------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIF 87
                                  +++  I + ++D+  T L++ L+   G   A    I 
Sbjct: 71  YGDLHRLVQAELGNHEPIKISTFDVVRAIAKAAKDERITGLVLDLAYFQGGDSASLHFIG 130

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             I + K     +  V E  +   Y ++  ++ I   +   V    +     Y K  LDK
Sbjct: 131 NEISEFKKSGKPVIAVGEQYSQPQYYLASFADKIYLNKAGFVDIHALSHSNVYFKTLLDK 190

Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204
           +       +    K+   PF   +++ +A Q  Q  + S +H   + ++++R IP ++  
Sbjct: 191 IEAEPHIFRVGAYKSAVEPFIRDDMSAEAKQNAQTWLTSIWHNIRQDIAQNRKIPAEQVL 250

Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
                        +      A    L+  +    ++  +L         
Sbjct: 251 LDSQTYIEKYRQLKGDDAQYALSQQLVTDIATNAQIQTALVERFGKDKD 299


>gi|73662359|ref|YP_301140.1| protease [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72494874|dbj|BAE18195.1| putative protease [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 330

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 64/300 (21%), Positives = 132/300 (44%), Gaps = 38/300 (12%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWS----------------------SHVEDNSPHVARIAI 43
           K+I    + + +V   ++  S S                          ++S  +A + +
Sbjct: 4   KRIIALILAVVIVLGGIIMSSISAVVSSLFSESTTSDTNPFTEKVEKEGNSSKRIAHLTL 63

Query: 44  RGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            G+I              + +  +++++ + +DDS   +++++++PGG  Y  + I+  I
Sbjct: 64  NGEITEGTGGGLFGGEGYNHEAFLKQLDNVKKDDSIKGVLLTVNTPGGGTYPSDEIYEKI 123

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           +++K +   I    +  A++G     A  + I A   ++ GSIGV+            LG
Sbjct: 124 KEIKQKHKKIYVHMDSMAASGGYYISAPADKIYAGPQTMTGSIGVIMSSIDYSGLQKNLG 183

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +    +KS   K   S   E+  +   ++Q V+D S++ FV +V + R++P  K   L+D
Sbjct: 184 IKQNVIKSGEHKDILSSSREMTSEERDILQSVLDDSFNRFVNIVKDGRDMPESKVRKLAD 243

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           GRI++  +AK  GLID +G +++  ++L      +     +        WF  + N+  S
Sbjct: 244 GRIYSAQQAKSNGLIDEIGYEDQTVKALKKDINAKDAEVFEYST--DGGWFSSMYNVKSS 301


>gi|190150587|ref|YP_001969112.1| protease 4 [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|307263931|ref|ZP_07545535.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|189915718|gb|ACE61970.1| protease 4 [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|306870796|gb|EFN02536.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 618

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 128/266 (48%), Gaps = 12/266 (4%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                +A + + GQI           S  +++ + +   DD+   +I+ ++SPGGSA A 
Sbjct: 321 QAEHKIAVVNVEGQIISGESDASSAGSDTIVKLLRKAREDDNVRGVILRVNSPGGSALAS 380

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + +++++   KPV+  +  MAAS GY IS  S+ I+A+ T++ GSIG+       +
Sbjct: 381 EIIRQEVEEIQKAGKPVVASMGGMAASGGYWISATSDKIIASPTTITGSIGIFGLATSFE 440

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                LGV+   +  SP  +  SP   +  +  +++Q  + + Y  F+ LVS  RN+   
Sbjct: 441 KTAKNLGVTEDGISLSPFASS-SPLKTLPKEQAEVIQISIQNGYDRFLELVSRGRNMSKQ 499

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261
               ++ G++W+G +A K GL+D +G     + ++  L    +      +    ++ W  
Sbjct: 500 AVDKIAQGQVWSGEDALKHGLVDELGDFTAAYSAVTELVNQRRKANNEAEIEHFRSQWMI 559

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287
           D  +    SLL+ +    + +   GL
Sbjct: 560 DSDDSLFGSLLKGSKLKFQLSSWLGL 585



 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 95/289 (32%), Gaps = 46/289 (15%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV----------ARIAIRGQIEDSQ-- 51
           + + I+   + L  +   +V F++ + +   S               + + G + D+   
Sbjct: 11  IFRCIREFVMSLFFIIFVLVCFAFLALINQESGSTKHTNFIEKGALTLNLDGYLADNHDK 70

Query: 52  -----------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIF 87
                                  +++  I + ++D+  T L++ L+   G   A    I 
Sbjct: 71  YGDLHRLVQAELGNHEPIKISTFDVVRAIAKAAKDERITGLVLDLAYFQGGDSASLHFIG 130

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             I + K     +  V E  +   Y ++  ++ I   +   V    +     Y K  LDK
Sbjct: 131 NEINEFKKSGKPVIAVGEQYSQPQYYLASFADKIYLNKAGFVDIHALSHSNVYFKTLLDK 190

Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204
           +       +    K+   PF   +++ +A Q  Q  + S +H   + ++ +R IP ++  
Sbjct: 191 IEAEPHIFRVGTYKSAVEPFIRDDMSAEAKQNAQTWLTSIWHNIRQDIAHNRKIPAEQVL 250

Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
                        +      A    L+  +    ++  +L         
Sbjct: 251 LDSQTYIEKYRQLKGDDAQYALSQQLVTDIATNAQIQTALVERFGKDKD 299


>gi|152979231|ref|YP_001344860.1| signal peptide peptidase SppA, 67K type [Actinobacillus
           succinogenes 130Z]
 gi|150840954|gb|ABR74925.1| signal peptide peptidase SppA, 67K type [Actinobacillus
           succinogenes 130Z]
          Length = 625

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 59/215 (27%), Positives = 113/215 (52%), Gaps = 11/215 (5%)

Query: 37  HVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           ++A + + G I D +          +++ +++   D+   AL++ ++SPGGSA+A E I 
Sbjct: 329 NIAVVNVEGTIIDGESDDQNVGGDTVVKLLQQAQTDERIKALVLRVNSPGGSAFASEKIR 388

Query: 88  RAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
           + +  ++ + KPV+  +  MAAS GY IS  ++ IVA + +L GSIG+   +P  +    
Sbjct: 389 QELTALQKQGKPVVVSMGGMAASGGYWISSTADYIVADKNTLTGSIGIFAMFPTFEKTAK 448

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
            +GV+   + +SP+    S  S  +     + Q  ++  Y  F+R+VSE R +  ++   
Sbjct: 449 NIGVTADGISTSPLADISSLESP-SKVVKDVYQLEIEHGYDEFLRVVSEGRRLDKEQVDQ 507

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           ++ G++W G +A K  L+D +G  +      + L 
Sbjct: 508 VAQGQVWLGQDAAKYHLVDALGNFDAAVNKAFELA 542



 Score = 85.4 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 50/329 (15%), Positives = 111/329 (33%), Gaps = 44/329 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-----RIAIRGQIEDSQ---- 51
           + F+   +   + +  ++    V+    S+    +  V       + + G + D++    
Sbjct: 15  LNFIRDVVMNLFFLAFILLALTVFGLVFSYKAGTTQLVGNQGALLLNLDGYLADNRDESL 74

Query: 52  ---------------------ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRA 89
                                +++  +E    D+    L++ L+   G    A + +  A
Sbjct: 75  TWQKALQEVNSNKIPMQISTFDVVYAVENAKDDERIKGLVLDLNFFEGADLPALDYVGNA 134

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           IQ  K     +    +    A Y ++  ++ I       V   G+  +  Y K  LDKL 
Sbjct: 135 IQHFKTSGKPVIVYADNYTQAQYYLASFADEIYLNPAGAVDIRGMTAKNLYFKSMLDKLD 194

Query: 150 VSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--- 204
           ++    +    K+   PF   +++P+A       V+  +  + + V+++R I   +    
Sbjct: 195 ITPHVFRVGTYKSAVEPFLRDDMSPEAKANAALWVNGMWDNYKQQVAQNRTIQTSQILPE 254

Query: 205 --LVLSDGRIWTG---AEAKKVGLIDVVGGQEEVWQSLYALGVDQSI--RKIKDWNPPKN 257
               L D +   G     A++  L+  +    E+ + L AL         K  D     +
Sbjct: 255 PNRYLQDLKALNGDNTRYAEQRRLVTTLATSSEMNEKLTALFGKDDEGTAKRVDLATYLS 314

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
                L            +  ++ T + G
Sbjct: 315 ALPDRLGGSGGKDFNIAVVN-VEGTIIDG 342


>gi|303250651|ref|ZP_07336848.1| protease 4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307252900|ref|ZP_07534789.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|302650639|gb|EFL80798.1| protease 4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306859689|gb|EFM91713.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
          Length = 618

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 128/266 (48%), Gaps = 12/266 (4%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                +A + + GQI           S  +++ + +   DD+   +I+ ++SPGGSA A 
Sbjct: 321 QAEHKIAVVNVEGQIISGESDASSAGSDTIVKLLRKAREDDNVRGVILRVNSPGGSALAS 380

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + +++++   KPV+  +  MAAS GY IS  S+ I+A+ T++ GSIG+       +
Sbjct: 381 EIIRQEVEEIQKAGKPVVASMGGMAASGGYWISATSDKIIASPTTITGSIGIFGLATSFE 440

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                LGV+   +  SP  +  SP   +  +  +++Q  + + Y  F+ LVS  RN+   
Sbjct: 441 KTAKNLGVTEDGISLSPFASS-SPLKTLPKEQAEVIQISIQNGYDRFLELVSRGRNMSKQ 499

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261
               ++ G++W+G +A K GL+D +G     + ++  L    +      +    ++ W  
Sbjct: 500 AVDKIAQGQVWSGEDALKHGLVDELGDFTAAYSAVTELVNQRRKANNEAEIEHFRSQWMI 559

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287
           D  +    SLL+ +    + +   GL
Sbjct: 560 DSDDSLFGSLLKGSKLKFQLSSWLGL 585



 Score = 83.1 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 96/289 (33%), Gaps = 46/289 (15%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV----------ARIAIRGQIEDSQ-- 51
           + + I+   + L  +   +V F++ + +   S               + + G + D+   
Sbjct: 11  IFRCIREFVMSLFFIIFVLVCFAFLALINQESGSTKHTNFIEKGALTLNLDGYLADNHDK 70

Query: 52  -----------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIF 87
                                  +++  I + ++D+  T L++ L+   G   A    I 
Sbjct: 71  YGDLHRLVQAELGNHEPIKISTFDVVRAIAKAAKDERITGLVLDLAYFQGGDSASLHFIG 130

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             I + K     +  V E  +   Y ++  ++ I   +   V    +     Y K  LDK
Sbjct: 131 NEISEFKKSGKPVIAVGEQYSQPQYYLASFADKIYLNKAGFVDIHALSHSNVYFKTLLDK 190

Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204
           +       +    K+   PF   +++ +A Q  Q  + S +H   + ++++R IP ++  
Sbjct: 191 IEAEPHIFRVGTYKSAVEPFIRDDMSAEAKQNAQTWLTSIWHNIRQDIAQNRKIPAEQVL 250

Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
                        +      A    L+  +    ++  +L         
Sbjct: 251 LDSQTYIEKYRQLKGDDAQYALSQQLVTDIATNAQIQTALVERFGKDKD 299


>gi|322378926|ref|ZP_08053342.1| protease IV (PspA) [Helicobacter suis HS1]
 gi|321148668|gb|EFX43152.1| protease IV (PspA) [Helicobacter suis HS1]
          Length = 292

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 64/277 (23%), Positives = 127/277 (45%), Gaps = 3/277 (1%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64
           L+ I   +  L L+ +  V    +       P++A++ + G I +S+   ++I +I ++ 
Sbjct: 19  LEFITRYFKALVLLLIVAVLLISTKGTTTQKPNLAKLYLYGPIFESESFQDQINKILQNP 78

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
           S    ++ + SPGG+  A   +   +  +  + PV+  V  + AS  Y     ++ I A 
Sbjct: 79  SIKGALLMIDSPGGTISASVELSDMVASLAKKMPVVAYVRGVMASGSYYAGMMASKIYAN 138

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             +L+GSIGV+F    + P +DKLG+  + V     K   +   E  P+  Q +  +++ 
Sbjct: 139 RGALIGSIGVIFSGVNIAPLMDKLGIKTQGVAKGAYKEVGTFMREWTPQEKQYLNGLLNE 198

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            Y  FV  V+++R++    T   ++G+I++  +A  + LID V   +E  ++L  L   +
Sbjct: 199 QYGMFVSDVAKARHLDPKDTPAFAEGKIFSAKQALFLKLIDRVSTYDEAIKALEHLSAVK 258

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
           +   ++         F D    S S  L   +    +
Sbjct: 259 NPIWLQKDKLE---IFMDKFFKSSSQALAQVLSYQMR 292


>gi|119713115|gb|ABL97184.1| protease IV a signal peptide peptidase [uncultured marine bacterium
           EB0_49D07]
          Length = 608

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 59/280 (21%), Positives = 122/280 (43%), Gaps = 13/280 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATA 68
           ++             ++   +A I   G I + +          +I++I     +++  A
Sbjct: 305 ISYNEYANQMEDDFSESENEIAIITAEGAIMEGEISQGVAGSSGVIKQIRSAHENENTKA 364

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETS 127
           ++  ++SPGGS  A E +   +   K +   V+  + + AAS G  IS  ++ I A  T+
Sbjct: 365 IVFRVNSPGGSIIASEMMRDELFAAKTKGIKVVVSMGDYAASGGVYISTPADYIFAEPTT 424

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           + GSIGV    P ++  +D +GV+   V +S       P   ++    ++       +Y 
Sbjct: 425 ITGSIGVAIALPTLENAMDYIGVNFDGVVTSKH-GGWDPTQAIDEDLDKIFASWGADAYD 483

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            FV  V++SR+  Y+    ++ GR+W    AK++GL+D +GG ++       L   +   
Sbjct: 484 RFVNFVADSRSQSYEDIKAIAGGRVWIATSAKEIGLVDEIGGIDDAIAYAVNLTELED-Y 542

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +++ +    +     ++ L  +  +    P +    + GL
Sbjct: 543 QVEYYGQELSPEELIIRELLENFDVSIKEPKVFSA-LNGL 581


>gi|260494495|ref|ZP_05814625.1| signal peptide peptidase SppA, 67K type [Fusobacterium sp. 3_1_33]
 gi|260197657|gb|EEW95174.1| signal peptide peptidase SppA, 67K type [Fusobacterium sp. 3_1_33]
          Length = 551

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/270 (20%), Positives = 122/270 (45%), Gaps = 13/270 (4%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70
                 ++      +   +A I + G+I          +   ++E+++ +    +   L+
Sbjct: 267 FLEYVSAYKRKKNKSKNTIAIINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLV 326

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + ++SPGGSA   E I++ ++K+    P+   + ++ AS GY I+     + A   +L G
Sbjct: 327 LRINSPGGSALESEKIYQKLKKL--EIPIYVSMGDLCASGGYYIATVGKKLFANPVTLTG 384

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+  YP     ++KL V+++             FS+++ ++ + +   ++  Y  F 
Sbjct: 385 SIGVVVLYPEFTETINKLKVNMEGFSKGKGFDIFDIFSKLSEESKEKIIYSMNEVYSEFK 444

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
             V ++RNI  +    ++ GR+W G++AK+ GL+D +G   +   SL      +  + I 
Sbjct: 445 EHVIQARNISEEDLEKIAGGRVWLGSQAKENGLVDELGSLNDCIDSLAKDLELKDFKLI- 503

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            +   +      +  +    +  D I  ++
Sbjct: 504 -YIRGRKSMMEVVSAMKPQFIKSDIIEKIE 532



 Score = 56.5 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 114/284 (40%), Gaps = 12/284 (4%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
           F+L K K +   +SL  +  V F+ +  VED    ++ I+I   +   + L++ +E +  
Sbjct: 27  FILGKFKNKDK-ISLKGVKTVVFNLNELVEDYM--ISTISINKTL-SHEVLLKALENLVN 82

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           D     +I+ +     S    E +    +K+   K +I         +  +   A+ I +
Sbjct: 83  DKKIKKIIIDVDEVDLSRVHIEELKGIFEKLSVNKEIIAIGTTFDEYSYQVSLLANKIYM 142

Query: 123 AA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQ 179
              + S +   G  ++ PY K  L   GV++ ++     K   E    ++++ +  + + 
Sbjct: 143 LNTKQSCLYFRGYEYKEPYFKNILATFGVTVNTLHIGDYKVAGESFSNNKMSEEKKESLI 202

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
           ++ ++ +  F+ LV E R +   K ++  D       +A ++GLID +   EE       
Sbjct: 203 NIKETLFQNFINLVKEKRKVDITKEILSGDLIFANSEKAIQLGLIDGLSTYEE-----IG 257

Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
           +  ++      ++           KN      LE  I   +  +
Sbjct: 258 IDYNEDTVDFLEYVSAYKRKKNKSKNTIAIINLEGEIDTRESKE 301


>gi|251771849|gb|EES52423.1| signal peptide peptidase SppA, 36K type [Leptospirillum
           ferrodiazotrophum]
          Length = 334

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 65/283 (22%), Positives = 122/283 (43%), Gaps = 19/283 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQE----------------LIERIERISRDDSATALIVSL 73
             E  +  V  + I G I D ++                L   +E+  RD    A+++ +
Sbjct: 46  PQEGATEKVVFLPIHGFIGDQEKKGGTPLLGGKTDQVRLLDRELEKARRDPHVRAIVLDI 105

Query: 74  SSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
            SPGGS  A + ++  I   +   + PVI    ++ AS  Y  +  ++ + A  TS+VGS
Sbjct: 106 DSPGGSVTASDRLYHKILLFRQRTKIPVIAFFGDLGASGAYYTAMGADEVWARPTSVVGS 165

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IGV+     V+  + K+GV+ ++V S   K   SPF E+ P+  ++ + +V   Y  F+ 
Sbjct: 166 IGVMIANVGVEGLMKKVGVTDRTVASGAEKEMGSPFREMTPEDRRIFEGLVADFYATFLE 225

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
           +V   R +  +    L+DGR++T  +A   GL+D VG + ++   L        +  +  
Sbjct: 226 VVERGRRMEANHLRPLADGRVFTARQALADGLLDRVGYRSDLIDHLKKKLGMNKLMLVTY 285

Query: 252 WNP-PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
                 +     +      S+    +  + ++        W+P
Sbjct: 286 RESDEGSPSLLGMDAGGFRSVSAQALAGLIRSLGPTPLYFWSP 328


>gi|307246184|ref|ZP_07528266.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307255165|ref|ZP_07536983.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307259602|ref|ZP_07541327.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306853119|gb|EFM85342.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306862038|gb|EFM94014.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866538|gb|EFM98401.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 618

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 129/266 (48%), Gaps = 12/266 (4%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                +A + + GQI           S  +++ + +   DD+   +I+ ++SPGGSA A 
Sbjct: 321 QAEHKIAVVNVEGQIISGESDASSAGSDTIVKLLRKAREDDNVRGVILRVNSPGGSALAS 380

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + +++++   KPV+  +  MAAS GY IS  S+ I+A+ T++ GSIG+       +
Sbjct: 381 EIIRQEVEEIQKAGKPVVASMGGMAASGGYWISATSDKIIASPTTITGSIGIFGLATSFE 440

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                LGV+   +  SP  +  SP   +  +  +++Q  ++S Y  F+ LVS  RN+   
Sbjct: 441 KTAKNLGVTEDGISLSPFASS-SPLKTLPKEQAEVIQISIESGYDRFLELVSRGRNMSKQ 499

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261
               ++ G++W+G +A K GL+D +G     + ++  L    +      +    ++ W  
Sbjct: 500 AVDKIAQGQVWSGEDALKHGLVDELGDFTAAYSAVIELVNQRRKANNEAEIEHFRSQWMI 559

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287
           D  +    SLL+ +    + +   GL
Sbjct: 560 DSDDSLFGSLLKGSKLKFQLSSWLGL 585



 Score = 82.7 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 96/289 (33%), Gaps = 46/289 (15%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV----------ARIAIRGQIEDSQ-- 51
           + + I+   + L  +   +V F++ + +   S               + + G + D+   
Sbjct: 11  IFRCIREFVMSLFFIIFVLVCFAFLALINQESGSTKHTNFIEKGALTLNLDGYLADNHDK 70

Query: 52  -----------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIF 87
                                  +++  I + ++D+  T L++ L+   G   A    I 
Sbjct: 71  YGDLHRLVQAELGNHEPIKISTFDVVRAIAKAAKDERITGLVLDLAYFQGGDSASLHFIG 130

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             I + K     +  V E  +   Y ++  ++ I   +   V    +     Y K  LDK
Sbjct: 131 NEISEFKKSGKPVIAVGEQYSQPQYYLASFADKIYLNKAGFVDIHALSHSNVYFKTLLDK 190

Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204
           +       +    K+   PF   +++ +A Q  Q  + S +H   + ++++R IP ++  
Sbjct: 191 IEAEPHIFRVGAYKSAVEPFIRDDMSAEAKQNAQTWLTSIWHNIRQDIAQNRKIPAEQVL 250

Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
                        +      A    L+  +    ++  +L         
Sbjct: 251 LDSQTYIEKYRQLKGDDAQYALSQQLVTDIATNAQIQTALVERFGKDKD 299


>gi|303236590|ref|ZP_07323172.1| signal peptide peptidase SppA, 67K type [Prevotella disiens
           FB035-09AN]
 gi|302483243|gb|EFL46256.1| signal peptide peptidase SppA, 67K type [Prevotella disiens
           FB035-09AN]
          Length = 590

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 66/274 (24%), Positives = 124/274 (45%), Gaps = 16/274 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQ--------------ELIERIERISRDDSATALIVSLS 74
                +   +A     G I D+Q              ++   +E +  DD+  A+++ ++
Sbjct: 295 DDTNLDDEKIAIYYAYGDIVDNQIAGLFGNNHVIAGKQVCSDLEEMMNDDNIKAVVIRIN 354

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           S GGSAYA E ++  I ++K  KPV+  +   AAS GY +S  +N IVA  T++ GSIG+
Sbjct: 355 SGGGSAYASEQMWHQIMELKKVKPVVVSMGGYAASGGYYMSAPANWIVAEPTTITGSIGI 414

Query: 135 LFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
              +P       +KLG+    V ++   A  S     NP+ ++M+Q  +D  Y  F   V
Sbjct: 415 FGMFPDYSGLATEKLGLKFDQVVTNKNAAFGSNVRPFNPEEMRMIQAYIDRGYATFKNRV 474

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           ++ R +   +   L+ G ++TG +A K+ L+D +GG +        L         + + 
Sbjct: 475 AQGRKMTIQQVENLAQGHVYTGEDALKIKLVDQLGGLDVAVAKAAQLAQIDDYC-TQSYP 533

Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
            P +++   ++     + L++ +        +  
Sbjct: 534 KPTSWFEQIMEMEPTGNYLDEQLRAGLGNLYEPF 567



 Score = 96.2 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 96/284 (33%), Gaps = 35/284 (12%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSW-----------SSHVEDNSPHVARIAIRGQIE- 48
           M+  LK +    + + L  L  + F++               E     V  + + GQ+  
Sbjct: 1   MKDFLKHVLATIIGIFLFGLITIAFAFISIVGMVLSTTDDKTEVKDNSVLVVNLSGQLTE 60

Query: 49  ------------------DSQELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRA 89
                                + I+ ++    DD    + +        S  + +    A
Sbjct: 61  RVEENIFSQLRGEVQQGIGLDDFIKGLKEAKDDDKIKGIYIEAGLFSSNSYASLQEARNA 120

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           I   K     +    +      Y ++ A++ +      ++   G+  Q  Y+K  L K G
Sbjct: 121 ILDFKKSGKWVVAYGDSYTQGAYYLASAADKVWLNPQGMIDWHGLATQRVYLKDMLGKFG 180

Query: 150 VSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
           + ++  K    K+    F+E  ++          + S ++   + VS SR +   K    
Sbjct: 181 IKMQVSKVGAYKSATETFTEEKMSDSDRAQTTAYLTSIWNNITKEVSNSRKVSVAKLNEY 240

Query: 208 SDGRIWTGA--EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           +D  I   A  +  K  + D +   ++V + +  L  +++   I
Sbjct: 241 ADSVITFAAPTDYIKYKMADKLLYTDQVKKEVKQLLGEEADADI 284


>gi|325570031|ref|ZP_08145956.1| U7 family peptidase [Enterococcus casseliflavus ATCC 12755]
 gi|325156859|gb|EGC69030.1| U7 family peptidase [Enterococcus casseliflavus ATCC 12755]
          Length = 343

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 118/255 (46%), Gaps = 15/255 (5%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPG 77
             D    + R+++ G I  S                +E +  I  D +   +++ +++PG
Sbjct: 57  AGDQDNRIVRLSLEGTIASSSSGGLFTTESYDHQRFLEELRMIQEDPTIGGILMEVNTPG 116

Query: 78  GSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           G  Y    I R + K+K    P+   +  MAAS GY IS  ++ I A + ++ GSIGV+ 
Sbjct: 117 GGVYESAEIARELAKIKELGIPMYVSMKNMAASGGYYISAGADKIFATDETITGSIGVIM 176

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                    +KLG+   + KS  +K   S   E      +++Q  VD++Y  FV++V+E 
Sbjct: 177 SGLNYAGLFEKLGIEDNTYKSGALKDVGSATREPTEADKEVLQTYVDNAYGRFVKIVAEG 236

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R +  +    ++DGRI+ G +A  VGL+D +G  E+   ++ A    +   +I  ++   
Sbjct: 237 RGMTEEAVRKIADGRIYDGQQAVSVGLVDEIGFPEDTLAAMQADLGLEDA-EIFSYDVSS 295

Query: 257 NYWFCDLKNLSISSL 271
             +       S++ L
Sbjct: 296 TGFASTWLGSSLAEL 310


>gi|330798433|ref|XP_003287257.1| hypothetical protein DICPUDRAFT_78124 [Dictyostelium purpureum]
 gi|325082717|gb|EGC36190.1| hypothetical protein DICPUDRAFT_78124 [Dictyostelium purpureum]
          Length = 639

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 67/284 (23%), Positives = 119/284 (41%), Gaps = 22/284 (7%)

Query: 26  SWSSHVEDNSPHVARIAIRGQI--------------EDSQELIERIERISRDDSATALIV 71
           S   + + N   +A I   G I                S  L+  I    +D    A+I+
Sbjct: 306 SPRLYSKKNKNLIALINCEGTIHQGAGKTKFNGGPSIGSDSLVLAIRSAVQDKDVKAIIL 365

Query: 72  SLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
            ++S GGS  A + +   I+  K   K ++  +    AS GY I+C ++ I+A   +L G
Sbjct: 366 RVNSGGGSYIASDLVHHEIEAAKKAGKKIVVSMGTYCASGGYFIACNADKIIALGATLTG 425

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSP-----MKAEPSPFSEVNPKAVQMMQDVVDSS 185
           SIGVL     ++P   K+GV+   ++ +P          S     N K +  + + +D  
Sbjct: 426 SIGVLTAKFNLQPMWKKIGVTFDDLRLNPDGTKDNATYFSSLHNYNEKQLSDVNNYLDFI 485

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ- 244
           Y  F   VS+ R +  D+   ++ GR+WTG++A   GL+D +GG +E  ++   L     
Sbjct: 486 YEDFTSKVSKGRRLTRDQVEEIARGRVWTGSQALDNGLVDKIGGIKEAIEAAKELCSMPS 545

Query: 245 -SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
            S   +  +           +  S   L +  +P+     +  +
Sbjct: 546 TSTPYVVTYPKENIVQALLSQPNSSRDLEKRGLPVQSSISLSSI 589



 Score = 76.2 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 93/272 (34%), Gaps = 26/272 (9%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           ++++ ++   R+ +LS    T+            +  +  I     I+ S          
Sbjct: 21  LQYINQRPLLRWFLLSAGFFTLKKIGKIIKNRVKNNTILEIDFTQNIDTSDVGMNPIEKI 80

Query: 52  ---------ELIERIERISRDDSATALIVSLSS-PGGSAYAGEAIFRAIQKVKNRKPVIT 101
                    +++E +E+ S D     LIV L      S    +    A+Q  K       
Sbjct: 81  FEPNTITFKDILESLEKASTDKKIIGLIVKLGGENQLSLSNIQEFRNAVQAFKKSGKRAV 140

Query: 102 EVHEMAASA-----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
              +           Y ++ A   +  +    V  I   + + +VK  L+KLGV   ++ 
Sbjct: 141 VFTDSFTEVGSGIARYYLASAFTDVYMSPAGTVNLINSQYDFAFVKGTLEKLGVVPDALT 200

Query: 157 SSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
               K+  +     ++     + M  +  S Y   +  +S+ R +  D+   L +   ++
Sbjct: 201 RKEYKSALNSLINEKLTEAEKESMNAIFKSLYDQIILDISKDRGLTVDQVNGLFETGPFS 260

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
             +A    LID     +EV+ + Y        
Sbjct: 261 ADKALVNKLIDATLYSDEVYTTTYEKLNIAKE 292


>gi|307261744|ref|ZP_07543410.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306868562|gb|EFN00373.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 618

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 129/266 (48%), Gaps = 12/266 (4%)

Query: 33  DNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                +A + + GQI           S  +++ + +   DD+   +I+ ++SPGGSA A 
Sbjct: 321 QAEHKIAVVNVEGQIISGESDASSSGSDTIVKLLRKAREDDNVRGVILRVNSPGGSALAS 380

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + +++++   KPV+  +  MAAS GY IS  S+ I+A+ T++ GSIG+       +
Sbjct: 381 EIIRQEVEEIQKAGKPVVASMGGMAASGGYWISATSDKIIASPTTITGSIGIFGLATSFE 440

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                LGV+   +  SP  +  SP   +  +  +++Q  +++ Y  F+ LVS  RN+   
Sbjct: 441 KTAKNLGVTEDGISLSPFASS-SPLKTLPKEQAEVIQISIENGYDRFLELVSRGRNMSKQ 499

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261
               ++ G++W+G +A K GL+D +G     + ++  L    +      +    ++ W  
Sbjct: 500 AVDKIAQGQVWSGEDALKHGLVDELGDFTAAYSAVTELVNQRRKANNEAEIEHFRSQWMI 559

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287
           D  +    SLL+ +    + +   GL
Sbjct: 560 DSDDSLFGSLLKGSKLKFQLSSWLGL 585



 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 95/289 (32%), Gaps = 46/289 (15%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV----------ARIAIRGQIEDSQ-- 51
           + + I+   + L  +   +V F++ + +   S               + + G + D+   
Sbjct: 11  IFRCIREFVMSLFFIIFVLVCFAFLALINQESGSTKHTNFIEKGALTLNLDGYLADNHDK 70

Query: 52  -----------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIF 87
                                  +++  I + ++D+  T L++ L+   G   A    I 
Sbjct: 71  YGDLHRLVQAELGNHEPIKISTFDVVRAIAKAAKDERITGLVLDLAYFQGGDSASLHFIG 130

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             I + K     +  V E  +   Y ++  ++ I   +   V    +     Y K  LDK
Sbjct: 131 NEINEFKKSGKPVIAVGEQYSQPQYYLASFADKIYLNKAGFVDIHALSHSNVYFKTLLDK 190

Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204
           +       +    K+   PF   +++ +A Q  Q  + S +H   + ++ +R IP ++  
Sbjct: 191 IEAEPHIFRVGTYKSAVEPFIRDDMSAEAKQNAQTWLTSIWHNIRQDIAHNRKIPAEQVL 250

Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
                        +      A    L+  +    ++  +L         
Sbjct: 251 LDSQTYIEKYRQLKGDDAQYALSQQLVTDIATNAQIQTALVERFGKDKD 299


>gi|119356392|ref|YP_911036.1| signal peptide peptidase A [Chlorobium phaeobacteroides DSM 266]
 gi|119353741|gb|ABL64612.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Chlorobium phaeobacteroides DSM 266]
          Length = 601

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 67/275 (24%), Positives = 112/275 (40%), Gaps = 15/275 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIE--------------DSQELIERIERISRDDSATALIVSLS 74
           ++  D    +A I + G I               D + L   +E    +    AL++ + 
Sbjct: 293 NYNADGRDAIALITLSGPIYRSGGASGMGVAEGFDEKLLQRSLEVALDNRDVKALVLRID 352

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGG A A   +   +     +KP++  +  +AAS GY+ + A N I A   ++ GSIGV
Sbjct: 353 SPGGDALASADMLEMLYFAAKKKPIVVSMSGVAASGGYMAALAGNKIFAEPLTITGSIGV 412

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
               P +   ++K G+  + V         S F  ++  A           YH FV  V+
Sbjct: 413 YALKPEISGLVEKTGLQREVVTRGRYADATSLFKPLDKDAYDKFVAASGDVYHDFVSKVA 472

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD-WN 253
            SR + +     ++ GR+W+G  A + GLID +GG  +  +    LG     +K +  + 
Sbjct: 473 TSRKMRWAAADSVAGGRVWSGKRALQAGLIDSLGGLHDAIREAQILGKIDKTKKPRILFY 532

Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
           P +  W   L     S         +KQ  +  L 
Sbjct: 533 PERKSWMESLAEGDFSGFSRSVTIALKQRLIHELV 567



 Score = 67.7 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 100/252 (39%), Gaps = 21/252 (8%)

Query: 10  TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI------------------EDSQ 51
             +V++ ++     +F + S        V  + I+G +                     Q
Sbjct: 16  FSFVVVPILIAVSAFFYFRSSYVLPDKFVLSVPIQGNLDEVHSLSSSLPLLSSAEPLSFQ 75

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
           +L+   +  + D    ++++ +     +      +  +I+K+K     +      A  + 
Sbjct: 76  DLLFLFDHAAGDKRIGSILLEIGGVHANPAKLTELRYSIEKMKASGKKVVAFLRSAEDSD 135

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV- 170
           YL++ A + IV  E   +   G+  +  +    L+K+G++ ++ +    K+   PF    
Sbjct: 136 YLLATACDSIVVEEGGFLMLDGLKAETLFYTKSLNKIGITFQASQWKTYKSGIEPFVRTG 195

Query: 171 -NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLIDVVG 228
            + + ++ + +++D  Y  ++   S+ R I  D    + D   + +  +A ++GL D + 
Sbjct: 196 ASSEYLEQIGELLDDVYDDYLGYASKRRGISRDSLQAVIDNMALLSAKKAVQLGLADGIA 255

Query: 229 GQEEVWQSLYAL 240
               + +SL   
Sbjct: 256 SSWALNRSLAGK 267


>gi|240013099|ref|ZP_04720012.1| putative protease [Neisseria gonorrhoeae DGI18]
 gi|240122291|ref|ZP_04735253.1| putative protease [Neisseria gonorrhoeae PID24-1]
          Length = 328

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 129/290 (44%), Gaps = 21/290 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57
           K I      L LV L    F           N+PH A + + G+I +  ++ ++++    
Sbjct: 45  KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGKIGNGVEDQVKKLKDGM 104

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114
           E   +   A A+++  +SPGGS       F  I+++K + P   V     +M AS  Y I
Sbjct: 105 EAAYKKPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A++ I A  +S+VGSIGV+         ++K+GV  +   +   K    PFS   P+ 
Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            ++ ++++   +  F++ V   R       +   +  GR++TGA+A KVGL+D +G    
Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280
           V + +           + D+ P  ++           + + + + +  ++
Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVSEALQAVR 328


>gi|165976686|ref|YP_001652279.1| protease IV, signal peptide peptidase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876787|gb|ABY69835.1| protease IV, signal peptide peptidase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 618

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 129/266 (48%), Gaps = 12/266 (4%)

Query: 33  DNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                +A + + GQI           S  +++ + +   DD+   +I+ ++SPGGSA A 
Sbjct: 321 QAEHKIAVVNVEGQIISGESDASSSGSDTIVKLLRKAREDDNVRGVILRVNSPGGSALAS 380

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + +++++   KPV+  +  MAAS GY IS  S+ I+A+ T++ GSIG+       +
Sbjct: 381 EIIRQEVEEIQKAGKPVVASMGGMAASGGYWISATSDKIIASPTTITGSIGIFGLATSFE 440

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                LGV+   +  SP  +  SP   +  +  +++Q  +++ Y  F+ LVS  RN+   
Sbjct: 441 KTAKNLGVTEDGISLSPFASS-SPLKTLPKEQAEVIQISIENGYDRFLELVSRGRNMSKQ 499

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261
               ++ G++W+G +A K GL+D +G     + ++  L    +      +    ++ W  
Sbjct: 500 AVDKIAQGQVWSGEDALKHGLVDELGDFTAAYSAVTELVNQRRKANNEAEIEHFRSQWMI 559

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287
           D  +    SLL+ +    + +   GL
Sbjct: 560 DSDDSLFGSLLKGSKLKFQLSSWLGL 585



 Score = 83.5 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 96/289 (33%), Gaps = 46/289 (15%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV----------ARIAIRGQIEDSQ-- 51
           + + I+   + L  +   +V F++ + +   S               + + G + D+   
Sbjct: 11  IFRCIREFVMSLFFIIFVLVCFAFLALINQESGSTKHTNFIEKGALTLNLDGYLADNHDK 70

Query: 52  -----------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIF 87
                                  +++  I + ++D+  T L++ L+   G   A    I 
Sbjct: 71  YGDLHRLVQAELGNHEPIKISTFDVVRAIAKAAKDERITGLVLDLAYFQGGDSASLHFIG 130

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             I + K     +  V E  +   Y ++  ++ I   +   V    +     Y K  LDK
Sbjct: 131 NEINEFKKSGKPVIAVGEQYSQPQYYLASFADKIYLNKAGFVDIHALSHSNVYFKTLLDK 190

Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204
           +       +    K+   PF   +++ +A Q  Q  + S +H   + ++++R IP ++  
Sbjct: 191 IEAEPHIFRVGTYKSAVEPFIRDDMSAEAKQNAQTWLTSIWHNIRQDIAQNRKIPAEQVL 250

Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
                        +      A    L+  +    ++  +L         
Sbjct: 251 LDSQTYIEKYRQLKGDDAQYALSQQLVTDIATNAQIQTALVERFGKDKD 299


>gi|159476306|ref|XP_001696252.1| signal peptide peptidase [Chlamydomonas reinhardtii]
 gi|158282477|gb|EDP08229.1| signal peptide peptidase [Chlamydomonas reinhardtii]
          Length = 744

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 118/238 (49%), Gaps = 17/238 (7%)

Query: 31  VEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALIVSLS 74
                P VA +   G I                 D+ +L  ++ ++  D    A++V ++
Sbjct: 400 ARKGQPKVAVVTAAGTIVQGPVPPTGPGANQQVIDATKLSAQLNQLLEDPDVRAVVVRVN 459

Query: 75  SPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           SPGGSA A ++I+  +Q+++   KPV+  + ++AAS GY I+ A++ +VA   ++ GSIG
Sbjct: 460 SPGGSALASDSIYHELQRLRAAGKPVVVSMGDVAASGGYYIAAAADAVVAQPGTVTGSIG 519

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V+     V   L+ +GV  + V         SPF+ + P+    ++ +VD  Y  F+  V
Sbjct: 520 VVAGKINVGRTLEDVGVRSEGVTVGRNADMLSPFTGLAPEQAAQVEALVDHVYDDFLDKV 579

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
           ++SR  P  +   L+ GR++TG +A  +GL+D +GG E       AL        + +
Sbjct: 580 AKSRGRPVSEVRQLAKGRVYTGQQAYDIGLVDQLGGLEAAVSRAKALAKLPEDVAVVE 637



 Score = 37.3 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/264 (10%), Positives = 78/264 (29%), Gaps = 26/264 (9%)

Query: 52  ELIERIERISRDDSATALIVSLSSPG--GSAYAGEAIFRAIQKVK-------NRKPVITE 102
           +++  ++R + D     L+  + +    G     + +  AI   +         +     
Sbjct: 102 KVVAALKRAAGDSRCRGLVTYVGARENLGGLATVQEVRDAISNFRLHLAAAAAGRGAGGG 161

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVL-------------FQYPYVKPFLDKLG 149
               ++ + +  + A                +L              +  + +P LD+L 
Sbjct: 162 GGGGSSGSSFPAAVAFAASFGEAGGSGMVPYLLASACDRVYVQPSGGRAFFARPLLDRLR 221

Query: 150 VSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
                      K+  + F E  +     + MQ ++       +  ++ +R +        
Sbjct: 222 AEPYFFAREEFKSAANTFRESGLTEPQRENMQALLGDLAGQMMSAMAAARGVDGAAVREA 281

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQ-SLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
            +      A A + GL+D    ++EV    + +       +  +     +      +  +
Sbjct: 282 VEAAPLLPAAALRRGLLDGTKYKDEVQSLYVISDKALAEEKAKQGAKHRRRQDDNRMVRV 341

Query: 267 SISSLLE-DTIPLMKQTKVQGLWA 289
            I   ++   +      +  G  A
Sbjct: 342 PIDKYIQVTELQAAAAARGSGWLA 365


>gi|290980063|ref|XP_002672752.1| predicted protein [Naegleria gruberi]
 gi|284086331|gb|EFC40008.1| predicted protein [Naegleria gruberi]
          Length = 660

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 71/280 (25%), Positives = 125/280 (44%), Gaps = 16/280 (5%)

Query: 29  SHVEDNSPHVARIAIRGQI------------EDSQELIERIERISRDDSATALIVSLSSP 76
           +  + +   VA I   G I             +S  +++ I +  +D     +++ + SP
Sbjct: 335 NPKKKDDNLVAVIYASGAIVRGRPSNPRDTNMNSNVIVDAIYKARKDKEVKVILIRVDSP 394

Query: 77  GGSAYAGEAIFRAIQ--KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG   A E I R I+  + +++K V+  +  +AAS GY IS   + IV    ++ GSIGV
Sbjct: 395 GGEVSASEVIRREIELARTEDKKKVVISMGGLAASGGYWISLPGDKIVCNPFTITGSIGV 454

Query: 135 LFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           +    Y+  F   KLGV+  SV +S      S F   N + +++  ++ D  Y  F+  V
Sbjct: 455 IMGKLYLGDFFSKKLGVTNDSVSTSKNAGLLSQFERANDQQMEIFNNLADDFYDSFLEKV 514

Query: 194 SESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           SE RNI  D     ++ G+++ G  AK + L+D VG   +  Q    L   ++   I  +
Sbjct: 515 SERRNISKDDLKNNIAKGKVYLGNSAKALNLVDSVGDFYDALQVAKELAGMKNEPHIVVF 574

Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           +P K      L N    S  ++       +  +   +++ 
Sbjct: 575 HPKKKSVIESLLNTQSPSNSKERALKSNVSIFEPFTSLYQ 614


>gi|294782115|ref|ZP_06747441.1| protease IV [Fusobacterium sp. 1_1_41FAA]
 gi|294480756|gb|EFG28531.1| protease IV [Fusobacterium sp. 1_1_41FAA]
          Length = 551

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 113/239 (47%), Gaps = 11/239 (4%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70
                 ++      +   +A I + G+I          +   ++E++E +    +   L+
Sbjct: 267 FVEYISAYKRKKNKSKNTIAVINLEGEIDIRESRESVINYDNVVEKLEVLEDIKNLKGLV 326

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + ++SPGGSA   E I++ ++K+    P+   + ++ AS GY I+     + A   +L G
Sbjct: 327 LRINSPGGSALESEKIYQKLKKL--EIPIYISMGDLCASGGYYIATVGKKLFATSVTLTG 384

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+  YP     ++KL V+++             FS+++ ++ + +   ++  Y  F 
Sbjct: 385 SIGVVILYPEFTEIINKLKVNMEGFSKGKGFDIFDVFSKLSEESKEKIIYSMNEVYSEFK 444

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
             V ++RNI  +    ++ GR+W G++AK+ GL+D +G   +   SL      +  + +
Sbjct: 445 EHVMQARNISEEDLEKIAGGRVWLGSQAKENGLVDELGTLNDCIDSLAKDLELKDFKLV 503



 Score = 71.6 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 113/286 (39%), Gaps = 16/286 (5%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
            V +K K + + +SL  +  V F+    VED    V+ ++I   +     +++ +E +  
Sbjct: 27  LVKRKFKNKDI-ISLKGVKTVVFNIGDLVEDYM--VSAVSINKAL-SHDIVLKALENLVD 82

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           D     +I+ +     S    E I    +K+   K +I         +  +   A+ I +
Sbjct: 83  DKKIEKIIIDVDEIDLSRVHIEEIKEIFKKLSADKEIIAIGTTFDEYSYQIALLANKIYM 142

Query: 123 AA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQ 179
              + S +   G  ++ PY K  L  LGV++ ++     K   E     ++  +  + + 
Sbjct: 143 LNTKQSCLYFRGYEYKEPYFKNILATLGVTVNTLHIGDYKVAGESFSHDKMTEEKKESLV 202

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG--AEAKKVGLIDVVGGQEEVWQSL 237
           ++ ++ +  F+ LV E R    D T  +  G +      +AK++GLID +   EE     
Sbjct: 203 NIKETLFQNFINLVKEKRK--VDITNEILSGDLIFANSEKAKELGLIDGLSTYEE----- 255

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
             +  D+      ++           KN      LE  I + +  +
Sbjct: 256 IGVDYDEDTVDFVEYISAYKRKKNKSKNTIAVINLEGEIDIRESRE 301


>gi|320103655|ref|YP_004179246.1| signal peptide peptidase SppA, 36K type [Isosphaera pallida ATCC
           43644]
 gi|319750937|gb|ADV62697.1| signal peptide peptidase SppA, 36K type [Isosphaera pallida ATCC
           43644]
          Length = 369

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 132/290 (45%), Gaps = 19/290 (6%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATA 68
           VV  +    V      VA I + G I ++               + E++   +RD +  A
Sbjct: 69  VVAVAVEPGVPVECAKVALIDLDGLIANAPMAGFFSLGDNPVATVSEKLAAAARDPTIMA 128

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAET 126
           ++V ++SPGG   A +A++R +Q  ++R  KP +  + ++ A  GY ++   + IVAA  
Sbjct: 129 VVVRINSPGGGVAATDALWREVQSFRSRTRKPTVAAIIDVGAGGGYYLAAGCDRIVAAPG 188

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           +++G IGV+     VK  + +  V  +S+K+       S    ++ ++ Q++Q++ D  +
Sbjct: 189 AIIGGIGVVLNLYNVKDLMAQFNVFSQSIKAGDKIDLGSSVEPLDDESRQLLQEMADEYH 248

Query: 187 HWFVRLVSESR-NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
             F ++V   R  +      +  DGRI +   A ++GLID +G  E+   +   L     
Sbjct: 249 ERFKQVVRRGRPGLTPQAEPLAFDGRIMSARRALELGLIDEIGHLEDALATARTLAGVPD 308

Query: 246 IRKI--KDWNPPKNYWFCDLKNLSISS-LLEDTIPLMKQTKVQGLWAVWN 292
              +  +         +    N  I + LL  +IP +++ K+ G   +W 
Sbjct: 309 AVPVLFRRRGDAAYSLYAVTPNTPIQNQLLPFSIPGVERAKLPGFLYLWQ 358


>gi|327404497|ref|YP_004345335.1| signal peptide peptidase SppA, 67K type [Fluviicola taffensis DSM
           16823]
 gi|327320005|gb|AEA44497.1| signal peptide peptidase SppA, 67K type [Fluviicola taffensis DSM
           16823]
          Length = 592

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 114/246 (46%), Gaps = 6/246 (2%)

Query: 30  HVEDNSPHVARIAIRGQI------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                + ++A I   G I        S E+ +    +  DD    ++  ++SPGGSA A 
Sbjct: 304 SDGSATANIAVIVGEGGITVDGDEMTSDEICKYFREVRNDDDIKVVVFRVNSPGGSALAS 363

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           E I+R +     +K VI  + ++AAS GY ++  ++ I A  T++ GSIGV    PY   
Sbjct: 364 EEIWREVSLTTKKKKVIVSMGDVAASGGYYVATPASTIFAEPTTITGSIGVFGVIPYTGG 423

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           F++           +   +  S   +++P+ + ++Q  VD  Y  F + V++ R +  D+
Sbjct: 424 FMENKLGLTFDRVQTNKHSVLSTNRKLSPEELTLIQGEVDQIYLQFKKRVADGRGLKIDQ 483

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ GR+WTGA+A K+GL+D +GG  +           +  + I      ++      
Sbjct: 484 VHRIARGRVWTGADALKIGLVDKLGGFNDALAFAIKEAKVKKAQVIYYPKVKEDPIEDLF 543

Query: 264 KNLSIS 269
           + LS  
Sbjct: 544 EQLSKE 549



 Score = 88.9 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 100/294 (34%), Gaps = 26/294 (8%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQI------------------EDSQELIERIE 58
           +  L V    + +  +     V  + + G I                      +++  +E
Sbjct: 28  IFWLIVFGSIFGNEPDSKDSSVLHMTLAGAIGERSSSSINPSSISMDKTTGLADILMGLE 87

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV--HEMAASAGYLISC 116
           +   D     + + L +          I   ++  K     I      E+     Y IS 
Sbjct: 88  KAKEDKRVKGIYLELGNVQCGYATAMEIRNGLKDFKKSGKFIVAYLNGEVITQKQYYISS 147

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV----KSSPMKAEPSPFSEVNP 172
            SN +    TS +  IG+  +  + K   DKLG+ ++ +           EP   ++++ 
Sbjct: 148 VSNEVYGFSTSAMEFIGLGGELMFFKNTFDKLGIEMQVIRGSNNDFKSAVEPYFRTDMSD 207

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQE 231
            +    Q  + S +      ++  R +   +   +  + +I    +A K+ LID    ++
Sbjct: 208 SSRVQTQRYMSSIWEDVRSQIAADRKVTAAQLNDIAENAKIQRVDDAVKLKLIDGAKYRD 267

Query: 232 EVWQSLYALGVDQSIRKIKDWN-PPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
           EV + +      ++++ I  +    K  +       S  S   +   ++ +  +
Sbjct: 268 EVEEIVLKKSGLKNLKDIMAFEDYAKKGFKNKQLAYSDGSATANIAVIVGEGGI 321


>gi|294617411|ref|ZP_06697045.1| Putative signal peptide peptidase sppA [Enterococcus faecium E1679]
 gi|291596317|gb|EFF27576.1| Putative signal peptide peptidase sppA [Enterococcus faecium E1679]
          Length = 341

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 123/255 (48%), Gaps = 16/255 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSP 76
              D++  + ++++ G I                +  +E+++ I  D +   + + ++SP
Sbjct: 53  EEGDSTQKIVKLSVDGTIAAGGSSGLFASEGYNHKNFMEQLKAIEEDPTVKGIFLEVNSP 112

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG  Y    I + +  ++     P+   +  MAAS GY IS  ++ I A E ++ GSIGV
Sbjct: 113 GGGVYESAEIAKKLDTIRKEHDIPMYVSMKNMAASGGYYISAQADKIFATEETVTGSIGV 172

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +         L+KLGV   +VKS  +K   S       +   ++Q  +DS+Y  FV +VS
Sbjct: 173 IMSGLNYSGLLEKLGVEDTTVKSGALKDMGSGTRPETKEEETVLQAYIDSAYSRFVAIVS 232

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           E RN   ++   ++DGRI+ G +AK+VGL+D +G  E+  +++      +   ++ +++ 
Sbjct: 233 EGRNKSEEEVKKIADGRIYDGVQAKEVGLVDELGFPEDALKAMRKEQQLEDA-ELVEYSS 291

Query: 255 PKNYWFCDLKNLSIS 269
             + +        ++
Sbjct: 292 APSGFASTWLGSKLA 306


>gi|194477179|ref|YP_002049358.1| signal peptide peptidase SppA (protease IV) [Paulinella
           chromatophora]
 gi|171192186|gb|ACB43148.1| signal peptide peptidase SppA (protease IV) [Paulinella
           chromatophora]
          Length = 276

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 131/262 (50%), Gaps = 8/262 (3%)

Query: 37  HVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
            +ARI + G I     + ++  +  +      + +++ + SPGG+    + I  A+ +++
Sbjct: 12  KIARICLEGPITGVVREWMLSVLRNVEE-QRMSGILLRIDSPGGTVGDSQEIHAALLRLR 70

Query: 95  NRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           N+   V+     ++AS G  I  A++ IV+   ++ GSIGV+ +   +   L+++G+  +
Sbjct: 71  NKGCKVVASFGNISASGGVYIGVAADKIVSNPGTITGSIGVVLRGNNLAKLLERIGIRFE 130

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
           ++KS   K   SP   ++P    ++QD++DSSY+ FV  +++ R +         DGRI+
Sbjct: 131 TIKSGIYKDILSPDRALSPAERNVLQDLIDSSYNQFVAAIAQGRGLKESFVREFGDGRIF 190

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSISSLL 272
           +GA+A  +GL+D +G +E   Q L  L     +  K   ++   +     + N +I S  
Sbjct: 191 SGAQALDLGLVDALGDEETALQLLSQLADVDLNQTKTLTFSRYGSKTKQSIMNENIFSKF 250

Query: 273 EDTIPLMKQTKVQGLWA---VW 291
           +    + +   ++  W+   +W
Sbjct: 251 QQAFKIQQALSLELDWSGQALW 272


>gi|329768602|ref|ZP_08260088.1| hypothetical protein HMPREF0428_01785 [Gemella haemolysans M341]
 gi|328836476|gb|EGF86137.1| hypothetical protein HMPREF0428_01785 [Gemella haemolysans M341]
          Length = 327

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 112/228 (49%), Gaps = 9/228 (3%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQ-------ELIERIERISRDDSATALIVSLSSPGGSAYA 82
              D+S  + +I+I G+I            ++ +I+    + +  A+++S++SPGG  Y 
Sbjct: 61  KKGDSSQVIQKISIEGEINSEMTNTYSRGSVLNQIKEAKGNPNVKAILLSVNSPGGGVYE 120

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
              ++ A++   + K V   + + AAS GY +S  +  I     +  GS+GV+  Y   +
Sbjct: 121 TAELYNALK--NSGKDVYVSMKKTAASGGYYVSTPAKKIFVNTETTTGSLGVIMSYVSAQ 178

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
            FL+  G+  ++V+S   KA      ++     +++Q+    +Y  FV+ ++E R++  D
Sbjct: 179 KFLNDHGIKQETVRSGDQKAVGGLTEDLPESTRKILQEQNKEAYERFVKAIAEGRHLSED 238

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
           +   L+DGR +TG +A    L D +G ++E+   +       +   I+
Sbjct: 239 EVKKLADGRTYTGTQAVANKLADKIGTEDELIDLIKEEKGLSNPTVIE 286


>gi|227501017|ref|ZP_03931066.1| S49 family peptidase [Anaerococcus tetradius ATCC 35098]
 gi|227216790|gb|EEI82188.1| S49 family peptidase [Anaerococcus tetradius ATCC 35098]
          Length = 327

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/268 (23%), Positives = 128/268 (47%), Gaps = 6/268 (2%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
              +    +  + + G I+       ++  ++    D     +I++++SPGGS YA E I
Sbjct: 55  QGSNPKEKIKVVDVDGVIKADDANDFVVSELKDAKDDPLVKGVILNVNSPGGSVYASERI 114

Query: 87  FRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
             AI+ +K  K  +   + +MAAS GY IS  +N I A+  +  GSIGV+ Q   ++   
Sbjct: 115 ANAIKALKKAKKPVYTVMGQMAASGGYYISAPTNRIYASNETWTGSIGVIIQSYSLQGLF 174

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           DK G+  +++ +  MK   S   ++N +  +  Q +V+S++  FV++V E R +   +  
Sbjct: 175 DKYGIKEQNITTGKMKDAGSQGRDMNKEEKEYFQGLVNSAFDRFVKIVVEGRGLSEKEVR 234

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP--PKNYWFCDL 263
            ++DGR++ G++A  +GL+D +G  +     + +         I++ N     +  F   
Sbjct: 235 KIADGRVYDGSQALSLGLVDKIGDIDSAISDMISDNKLGDPMVIRNDNVMGSLSSLFSKA 294

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWAVW 291
           ++L  S      +  + +    G   ++
Sbjct: 295 RDLRKSYSDLAVLEKLMKENNIGPMYLY 322


>gi|307257321|ref|ZP_07539091.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306864171|gb|EFM96084.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 618

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 129/266 (48%), Gaps = 12/266 (4%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                +A + + GQI           S  +++ + +   DD+   +I+ ++SPGGSA A 
Sbjct: 321 QAEHKIAVVNVEGQIISGESDASSAGSDTIVKLLRKAREDDNVRGVILRVNSPGGSALAS 380

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + +++++   KPV+  +  MAAS GY IS  S+ I+A+ T++ GSIG+       +
Sbjct: 381 EIIRQEVEEIQKAGKPVVASMGGMAASGGYWISATSDKIIASPTTITGSIGIFGLATSFE 440

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                LGV+   +  SP  +  SP   +  +  +++Q  +++ Y  F+ LVS  RN+   
Sbjct: 441 KTAKNLGVTEDGISLSPFASS-SPLKTLQKEQAEVIQISIENGYDRFLELVSRGRNMSKQ 499

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261
               ++ G++W+G +A K GL+D +G     + ++  L    +      +    ++ W  
Sbjct: 500 AVDKIAQGQVWSGEDALKHGLVDELGDFTAAYSAVTELVNQRRKANNEAEIEHFRSQWMI 559

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287
           D  +    SLL+ +    + +   GL
Sbjct: 560 DSDDSLFGSLLKGSKLKFQLSSWLGL 585



 Score = 83.1 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 96/289 (33%), Gaps = 46/289 (15%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV----------ARIAIRGQIEDSQ-- 51
           + + I+   + L  +   +V F++ + +   S               + + G + D+   
Sbjct: 11  IFRCIREFVMSLFFIIFVLVCFAFLALINQESGSTKHTNFIEKGALTLNLDGYLADNHDK 70

Query: 52  -----------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIF 87
                                  +++  I + ++D+  T L++ L+   G   A    I 
Sbjct: 71  YGDLHRLVQAELGNHEPIKISTFDVVRAIAKAAKDERITGLVLDLAYFQGGDSASLHFIG 130

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             I + K     +  V E  +   Y ++  ++ I   +   V    +     Y K  LDK
Sbjct: 131 NEISEFKKSGKPVIAVGEQYSQPQYYLASFADKIYLNKAGFVDIHALSHSNVYFKTLLDK 190

Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204
           +       +    K+   PF   +++ +A Q  Q  + S +H   + ++++R IP ++  
Sbjct: 191 IEAEPHIFRVGTYKSAVEPFIRDDMSAEAKQNAQTWLTSIWHNIRQDIAQNRKIPAEQVL 250

Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
                        +      A    L+  +    ++  +L         
Sbjct: 251 LDSQTYIEKYRQLKGDDAQYALSQQLVTDIATNAQIQTALVERFGKDKD 299


>gi|257875577|ref|ZP_05655230.1| protease/peptidase [Enterococcus casseliflavus EC20]
 gi|257809743|gb|EEV38563.1| protease/peptidase [Enterococcus casseliflavus EC20]
          Length = 343

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 118/255 (46%), Gaps = 15/255 (5%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPG 77
             D    + R+++ G I  S                +E +  I  D +   +++ +++PG
Sbjct: 57  AGDQDNRIVRLSLEGTIASSSSGGLFTTESYDHQRFLEELRMIQEDPTIGGILMEVNTPG 116

Query: 78  GSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           G  Y    I R + K+K    P+   +  MAAS GY IS  ++ I A + ++ GSIGV+ 
Sbjct: 117 GGVYESAEIARELAKIKELGIPMYVSMKNMAASGGYYISAGADKIFATDETITGSIGVIM 176

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                    +KLG+   + KS  +K   S   +      +++Q  VD++Y  FV++V+E 
Sbjct: 177 SGLNYAGLFEKLGIEDNTYKSGALKDVGSATRKPTEADKEVLQTYVDNAYGRFVKIVAEG 236

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R +  +    ++DGRI+ G +A  VGL+D +G  E+   ++ A    +   +I  ++   
Sbjct: 237 RGMTEEAVRKIADGRIYDGQQAVSVGLVDEIGFPEDTLAAMQADLGLEDA-EIFSYDVSS 295

Query: 257 NYWFCDLKNLSISSL 271
             +       S++ L
Sbjct: 296 TGFASTWLGSSLAEL 310


>gi|257459261|ref|ZP_05624378.1| signal peptide peptidase SppA, 36K type [Campylobacter gracilis
           RM3268]
 gi|257443360|gb|EEV18486.1| signal peptide peptidase SppA, 36K type [Campylobacter gracilis
           RM3268]
          Length = 290

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 69/278 (24%), Positives = 126/278 (45%), Gaps = 7/278 (2%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           + F+ K  K+       + +  + F+     +    ++A++++ G I D  E++E+IE +
Sbjct: 15  LGFINKYFKSL----IFLLILFLIFAGGESAQQKGANLAQLSLSGAIMDDSEILEKIEAL 70

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
             D++   +++ + SPGG+      I  AI+ + +RKPV+       AS  YL    ++ 
Sbjct: 71  KNDEAIKGVLLLIDSPGGALSPSVEISLAIKSLNSRKPVVAYAKGTMASGSYLGGVWASK 130

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           I A   S +GSIGV+ Q   V     KLG + + VK+  +K   +   + +      +Q 
Sbjct: 131 IYANPGSFIGSIGVIMQGLDVSEAAAKLGFAEQIVKAGELKEAGTMMRKWSDAERASLQA 190

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +VD SY  F R V+++R++   K    ++ R++  + AK VGLID VG  ++   +L   
Sbjct: 191 LVDESYELFTREVAQARSLDIRKRDTWANARVFLASGAKGVGLIDEVGSLDDAKSALVKA 250

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278
                    +     K     D       SL+      
Sbjct: 251 SGVADPIWQEPSAYEK---MMDRLANKSESLVRGAFGA 285


>gi|325856625|ref|ZP_08172263.1| signal peptide peptidase SppA, 67K type [Prevotella denticola CRIS
           18C-A]
 gi|325483339|gb|EGC86314.1| signal peptide peptidase SppA, 67K type [Prevotella denticola CRIS
           18C-A]
          Length = 592

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 69/276 (25%), Positives = 123/276 (44%), Gaps = 16/276 (5%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------------SQELIERIERISRD 63
           V++T +        +++   +A     G I D              +Q + + +E + +D
Sbjct: 286 VSVTDLKNIEDESQKEDDNQIAIYYAYGDIVDGAAGGMFAQGHKIDAQTVCKDLEALGKD 345

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
               A+++ ++S GGSAYA E I+  I K+K  KPV+  +  MAAS GY +S  +N IVA
Sbjct: 346 KDVKAVVLRINSGGGSAYASEQIWHQIMKLKKLKPVVVSMGGMAASGGYYMSAPANWIVA 405

Query: 124 AETSLVGSIGVLFQYPYVKP-FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
             T++ GSIG+   +P     F +KLGV    VK++      +       + +  +   V
Sbjct: 406 EPTTITGSIGIFGMFPDASGLFAEKLGVKFDEVKTNRHSDFGTQARPFTEEEMAFLGQYV 465

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           D  Y  F   V+E R +  ++   ++ G ++TG +A+K+GL+D +GG +        L  
Sbjct: 466 DRGYRLFRHRVAEGRRMTDEQVEKIAQGHVFTGQDARKIGLVDQLGGLDVALMKAAKLAK 525

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278
                    +          L+     + L + +  
Sbjct: 526 LSG-YSTCSYPEEPGIIEQLLEQTKPDNYLSEQLRA 560



 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 103/283 (36%), Gaps = 34/283 (12%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYF----------SWSSHVEDNSPHVARIAIRGQIE-- 48
           M+   K +   +V + L ++ + +F          S  +  E  +  V  + + GQ+   
Sbjct: 1   MKQFFKFVFASFVGMLLFSIVMAFFALITVAGMIASQDATKEPEANSVLVLNLSGQLTER 60

Query: 49  -----------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                                L+E I +  ++ +   + +   +    +YA  +A+  A+
Sbjct: 61  GEDNIISQLQGSTTGSIGLDNLLEGIHKAKKNGNIKGIYIEAGAFAADSYASMQALRNAL 120

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
              K     I    +      Y ++ A++ +       +   G+  Q  ++K  L K+GV
Sbjct: 121 LDFKKSGKWIIAYGDTYTQGTYYLASAADKVYLNPQGQIDWHGLASQPVFIKDLLAKVGV 180

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
            ++ VK    K+ P  F    ++    +     ++S +    + V  SR +   +    +
Sbjct: 181 KMQVVKVGAYKSAPEMFTGDRMSDANREQTAAYLNSIWGNITKEVGASRQLSVVQLNAYA 240

Query: 209 DGRIWTGAEAK--KVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           D  I   A A   K+ L+D +   +++   +       S + I
Sbjct: 241 DSMITFAAPADYVKMKLVDGLVYTDQMKDLVKKQLGLPSDKDI 283


>gi|320539622|ref|ZP_08039286.1| protease IV (signal peptide peptidase) [Serratia symbiotica str.
           Tucson]
 gi|320030234|gb|EFW12249.1| protease IV (signal peptide peptidase) [Serratia symbiotica str.
           Tucson]
          Length = 618

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 65/271 (23%), Positives = 122/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPGGS 79
              +     +A +   G I D                + ++  D    A+++ ++SPGGS
Sbjct: 319 KPADTQGDEIAVVFANGAIIDGPQAAGTVGDDTTAAELRQVRLDPIIKAVVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   + +++   KPV+  +  MAAS GY IS  ++ I+A+ ++L GSIG+    
Sbjct: 379 VSASEVIRAELAEIRAAGKPVVVSMGGMAASGGYWISTPADYIIASPSTLTGSIGIFGII 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  LD +GV    V +SP+    +    + P   Q+MQ  ++  Y  F+ LV+++R 
Sbjct: 439 NTYERTLDSIGVHTDGVATSPLADITAT-KALPPAFSQIMQLSIEHGYKNFIDLVAKARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           +   +   ++ G +W G++AK  GL+D +G  ++  + +  L       K+  +    + 
Sbjct: 498 MVPQQVDQIAQGHVWLGSDAKANGLVDQLGDFDDAVKKVAELAKL-KQWKLNWFVDTPSL 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
               L + S S  +   +P   Q  +    A
Sbjct: 557 TEMVLSHFSGS--IHAMLPAAIQAILPAPLA 585



 Score = 74.6 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 89/276 (32%), Gaps = 44/276 (15%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIER 56
           YF  S+           + + G + D                             EL+  
Sbjct: 44  YFQNSTTPAIPEHGALLVDLSGVVVDQPSMNNKIRQWGRELLSASSNRLQENSLFELVSS 103

Query: 57  IERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
           I +   D + T +++ L+  GG+       I +A+++ ++    I  + +  +   Y ++
Sbjct: 104 IRKAKDDKTITGMVLQLNDFGGADQPSLHYIGKALREFRDSGKPIIAIGDSYSQMQYYLA 163

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FSEVNPK 173
             +N I  +    V   G      Y K  L+   V+    +    K+   P    +++  
Sbjct: 164 SYANRIYLSPQGSVDLRGFASNNLYYKSLLEMFKVTSHIFRVGTYKSAVEPLIRDDMSLA 223

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKT----LVLSDGRIWTGAE----AKKVGLID 225
           A +     +   +  ++  V+ +R +   +       +  G   +G +    A    L+D
Sbjct: 224 AREADSRWIGGLWQNYLDTVAANRQLTPQQLFPGADNVLSGLQASGGDTACYALDNKLVD 283

Query: 226 VVGGQEEVWQSLY------ALGVDQSIRKIKDWNPP 255
            +  +  +   L           + +   I D+   
Sbjct: 284 ELASRTAIEDQLVKTFGWNKRANNFNAISIYDYQLK 319


>gi|322380240|ref|ZP_08054461.1| protease IV (PspA) [Helicobacter suis HS5]
 gi|321147318|gb|EFX41997.1| protease IV (PspA) [Helicobacter suis HS5]
          Length = 292

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 63/277 (22%), Positives = 126/277 (45%), Gaps = 3/277 (1%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64
           L+ I   +  L L+ +  V    +       P++A++ + G I +S+   ++I +I ++ 
Sbjct: 19  LEFITRYFKALVLLLIVAVLLISTKGTTTQKPNLAKLYLYGPIFESESFQDQINKILQNP 78

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
           S    ++ + SPGG+  A   +   +  +  + PV+  V  + AS  Y     ++ I A 
Sbjct: 79  SIKGALLMIDSPGGTISASVELSDMVASLAKKMPVVAYVRGVMASGSYYAGMMASKIYAN 138

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             +L+GSIGV+F    + P +DKLG+  + V     K   +   E  P+  Q +  +++ 
Sbjct: 139 RGALIGSIGVIFSGVNIAPLMDKLGIKTQGVAKGAYKEVGTFMREWTPQEKQYLNGLLNE 198

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            Y  FV  V+++R++        ++G+I++  +A  + LID V   +E  ++L  L   +
Sbjct: 199 QYGMFVSDVAKARHLDPKDAPAFAEGKIFSAKQALFLKLIDRVSTYDEAIKALEHLSAVK 258

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
           +   ++         F D    S S  L   +    +
Sbjct: 259 NPIWLQKDKLE---IFMDKFFKSSSQALAQVLSYQMR 292


>gi|303252103|ref|ZP_07338272.1| protease 4 [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307248290|ref|ZP_07530316.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|302649085|gb|EFL79272.1| protease 4 [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306855224|gb|EFM87401.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 618

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 129/266 (48%), Gaps = 12/266 (4%)

Query: 33  DNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                +A + + GQI           S  +++ + +   DD+   +I+ ++SPGGSA A 
Sbjct: 321 QAEHKIAVVNVEGQIISGESDASSSGSDTIVKLLRKAREDDNVRGVILRVNSPGGSALAS 380

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + +++++   KPV+  +  MAAS GY IS  S+ I+A+ T++ GSIG+       +
Sbjct: 381 EIIRQEVEEIQKAGKPVVASMGGMAASGGYWISATSDKIIASPTTITGSIGIFGLATSFE 440

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                LGV+   +  SP  +  SP   +  +  +++Q  +++ Y  F+ LVS  RN+   
Sbjct: 441 KTAKNLGVTEDGISLSPFASS-SPLKTLQKEQAEVIQISIENGYDRFLELVSRGRNMSKQ 499

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261
               ++ G++W+G +A K GL+D +G     + ++  L    +      +    ++ W  
Sbjct: 500 AVDKIAQGQVWSGEDALKHGLVDELGDFTAAYSAVTELVNQRRKANNEAEIEHFRSQWMI 559

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287
           D  +    SLL+ +    + +   GL
Sbjct: 560 DSDDSLFGSLLKGSKLKFQLSSWLGL 585



 Score = 83.1 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 96/289 (33%), Gaps = 46/289 (15%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV----------ARIAIRGQIEDSQ-- 51
           + + I+   + L  +   +V F++ + +   S               + + G + D+   
Sbjct: 11  IFRCIREFVMSLFFIIFVLVCFAFLALINQESGSTKHTNFIEKGALTLNLDGYLADNHDK 70

Query: 52  -----------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIF 87
                                  +++  I + ++D+  T L++ L+   G   A    I 
Sbjct: 71  YGDLHRLVQAELGNHEPIKISTFDVVRAIAKAAKDERITGLVLDLAYFQGGDSASLHFIG 130

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             I + K     +  V E  +   Y ++  ++ I   +   V    +     Y K  LDK
Sbjct: 131 NEISEFKKSGKPVIAVGEQYSQPQYYLASFADKIYLNKAGFVDIHALSHSNVYFKTLLDK 190

Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204
           +       +    K+   PF   +++ +A Q  Q  + S +H   + ++++R IP ++  
Sbjct: 191 IEAEPHIFRVGTYKSAVEPFIRDDMSAEAKQNAQTWLTSIWHNIRQDIAQNRKIPAEQVL 250

Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
                        +      A    L+  +    ++  +L         
Sbjct: 251 LDSQTYIEKYRQLKGDDAQYALSQQLVTDIATNAQIQTALVERFGKDKD 299


>gi|327313455|ref|YP_004328892.1| signal peptide peptidase SppA, 67K type [Prevotella denticola
           F0289]
 gi|326946213|gb|AEA22098.1| signal peptide peptidase SppA, 67K type [Prevotella denticola
           F0289]
          Length = 592

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 69/276 (25%), Positives = 123/276 (44%), Gaps = 16/276 (5%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------------SQELIERIERISRD 63
           V++T +        +++   +A     G I D              +Q + + +E + +D
Sbjct: 286 VSVTDLKNIEDESQKEDDNQIAIYYAYGDIVDGAAGGMFAQGHKIDAQTVCKDLEALGKD 345

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
               A+++ ++S GGSAYA E I+  I K+K  KPV+  +  MAAS GY +S  +N IVA
Sbjct: 346 KDVKAVVLRINSGGGSAYASEQIWHQIMKLKKLKPVVVSMGGMAASGGYYMSAPANWIVA 405

Query: 124 AETSLVGSIGVLFQYPYVKP-FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
             T++ GSIG+   +P     F +KLGV    VK++      +       + +  +   V
Sbjct: 406 EPTTITGSIGIFGMFPDASGLFAEKLGVKFDEVKTNQHSDFGTQARPFTEEEMAFLGQYV 465

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           D  Y  F   V+E R +  ++   ++ G ++TG +A+K+GL+D +GG +        L  
Sbjct: 466 DRGYRLFRHRVAEGRRMTDEQIEKIAQGHVFTGQDARKIGLVDQLGGLDVALMKAAKLAK 525

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278
                    +          L+     + L + +  
Sbjct: 526 LSG-YSTCSYPEEPGIIEQLLEQTKPDNYLSEQLRA 560



 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 102/283 (36%), Gaps = 34/283 (12%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYF----------SWSSHVEDNSPHVARIAIRGQIE-- 48
           M+   K +   +V + L ++ + +F          S  +  E  +  V  + + GQ+   
Sbjct: 1   MKQFFKFVFASFVGMLLFSIVMAFFALITVAGMIASQDTTKEPEANSVLVLNLSGQLTER 60

Query: 49  -----------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                                L+E I +   +D+   + +   +    +YA  +A+   +
Sbjct: 61  GEDNIISQLQGSTTGSIGLDNLLEGIHKAKNNDNIKGIYIEAGAFAADSYASMQALRNVL 120

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
              K     I    +      Y ++ A++ +       +   G+  Q  ++K  L K+GV
Sbjct: 121 LDFKKSGKWIIAYGDTYTQGTYYLASAADKVYLNPQGQIDWHGLASQPVFIKDLLAKVGV 180

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
            ++ VK    K+ P  F    ++    +     ++S +    + V  SR +   +    +
Sbjct: 181 KMQVVKVGAYKSAPEMFTGDRMSDANREQTAAYLNSIWGNITKEVGASRQLSVVQLNAYA 240

Query: 209 DGRIWTGAEAK--KVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           D  I   A A   K+ L+D +   +++   +       S + I
Sbjct: 241 DSMITFAAPADYVKMKLVDGLVYTDQMKDVVKKQLGLPSDKDI 283


>gi|257882895|ref|ZP_05662548.1| protease/peptidase [Enterococcus faecium 1,231,502]
 gi|257889327|ref|ZP_05668980.1| protease/peptidase [Enterococcus faecium 1,231,410]
 gi|257894340|ref|ZP_05673993.1| protease/peptidase [Enterococcus faecium 1,231,408]
 gi|258616002|ref|ZP_05713772.1| protease/peptidase protein [Enterococcus faecium DO]
 gi|260560062|ref|ZP_05832240.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|261207449|ref|ZP_05922135.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289565860|ref|ZP_06446301.1| signal peptide peptidase sppA [Enterococcus faecium D344SRF]
 gi|293559811|ref|ZP_06676329.1| Putative signal peptide peptidase sppA [Enterococcus faecium E1162]
 gi|294623410|ref|ZP_06702266.1| putative protease [Enterococcus faecium U0317]
 gi|314939698|ref|ZP_07846922.1| signal peptide peptidase SppA [Enterococcus faecium TX0133a04]
 gi|314942226|ref|ZP_07849078.1| signal peptide peptidase SppA [Enterococcus faecium TX0133C]
 gi|314948859|ref|ZP_07852229.1| signal peptide peptidase SppA [Enterococcus faecium TX0082]
 gi|314950801|ref|ZP_07853873.1| signal peptide peptidase SppA [Enterococcus faecium TX0133A]
 gi|314992218|ref|ZP_07857658.1| signal peptide peptidase SppA [Enterococcus faecium TX0133B]
 gi|314995223|ref|ZP_07860336.1| signal peptide peptidase SppA [Enterococcus faecium TX0133a01]
 gi|257818553|gb|EEV45881.1| protease/peptidase [Enterococcus faecium 1,231,502]
 gi|257825687|gb|EEV52313.1| protease/peptidase [Enterococcus faecium 1,231,410]
 gi|257830719|gb|EEV57326.1| protease/peptidase [Enterococcus faecium 1,231,408]
 gi|260073897|gb|EEW62221.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|260078340|gb|EEW66045.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289162320|gb|EFD10179.1| signal peptide peptidase sppA [Enterococcus faecium D344SRF]
 gi|291597176|gb|EFF28371.1| putative protease [Enterococcus faecium U0317]
 gi|291606230|gb|EFF35646.1| Putative signal peptide peptidase sppA [Enterococcus faecium E1162]
 gi|313590553|gb|EFR69398.1| signal peptide peptidase SppA [Enterococcus faecium TX0133a01]
 gi|313593218|gb|EFR72063.1| signal peptide peptidase SppA [Enterococcus faecium TX0133B]
 gi|313597016|gb|EFR75861.1| signal peptide peptidase SppA [Enterococcus faecium TX0133A]
 gi|313598998|gb|EFR77843.1| signal peptide peptidase SppA [Enterococcus faecium TX0133C]
 gi|313641033|gb|EFS05613.1| signal peptide peptidase SppA [Enterococcus faecium TX0133a04]
 gi|313644732|gb|EFS09312.1| signal peptide peptidase SppA [Enterococcus faecium TX0082]
          Length = 341

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 123/255 (48%), Gaps = 16/255 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSP 76
              D++  + ++++ G I                +  +E+++ I  D +   + + ++SP
Sbjct: 53  EEGDSTQKIVKLSVDGTIAAGGSSGLFASEGYNHKNFMEQLKAIEEDPTVKGIFLEVNSP 112

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG  Y    I + +  ++     P+   +  MAAS GY IS  ++ I A E ++ GSIGV
Sbjct: 113 GGGVYESAEIAKKLDTIRKEHDIPMYVSMKNMAASGGYYISAQADKIFATEETVTGSIGV 172

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +         L+KLGV   +VKS  +K   S       +   ++Q  +DS+Y  FV +VS
Sbjct: 173 IMSGLNYSGLLEKLGVEDTTVKSGALKDMGSGTRPETKEEEAVLQAYIDSAYSRFVAIVS 232

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           E RN   ++   ++DGRI+ G +AK+VGL+D +G  E+  +++      +   ++ +++ 
Sbjct: 233 EGRNKSEEEVKKIADGRIYDGVQAKEVGLVDELGFPEDALKAIRKEQQLEDA-ELVEYSS 291

Query: 255 PKNYWFCDLKNLSIS 269
             + +        ++
Sbjct: 292 TPSGFASTWLGSKLA 306


>gi|257878473|ref|ZP_05658126.1| protease/peptidase [Enterococcus faecium 1,230,933]
 gi|257812701|gb|EEV41459.1| protease/peptidase [Enterococcus faecium 1,230,933]
          Length = 341

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 123/255 (48%), Gaps = 16/255 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSP 76
              D++  + ++++ G I                +  +E+++ I  D +   + + ++SP
Sbjct: 53  EKGDSTQKIVKLSVDGTIAAGGSSGLFASEGYNHKNFMEQLKAIEEDPTVKGIFLEVNSP 112

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG  Y    I + +  ++     P+   +  MAAS GY IS  ++ I A E ++ GSIGV
Sbjct: 113 GGGVYESAEIAKKLDTIRKEHDIPMYVSMKNMAASGGYYISAQADKIFATEETVTGSIGV 172

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +         L+KLGV   +VKS  +K   S       +   ++Q  +DS+Y  FV +VS
Sbjct: 173 IMSGLNYSGLLEKLGVEDTTVKSGALKDMGSGTRPETKEEEAVLQAYIDSAYSRFVAIVS 232

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           E RN   ++   ++DGRI+ G +AK+VGL+D +G  E+  +++      +   ++ +++ 
Sbjct: 233 EGRNKSEEEVKKIADGRIYDGVQAKEVGLVDELGFPEDALKAIRKEQQLEDA-ELVEYSS 291

Query: 255 PKNYWFCDLKNLSIS 269
             + +        ++
Sbjct: 292 TPSGFASTWLGSKLA 306


>gi|125973935|ref|YP_001037845.1| signal peptide peptidase SppA, 36K type [Clostridium thermocellum
           ATCC 27405]
 gi|256005058|ref|ZP_05430029.1| signal peptide peptidase SppA, 36K type [Clostridium thermocellum
           DSM 2360]
 gi|125714160|gb|ABN52652.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Clostridium thermocellum ATCC 27405]
 gi|255991026|gb|EEU01137.1| signal peptide peptidase SppA, 36K type [Clostridium thermocellum
           DSM 2360]
 gi|316939864|gb|ADU73898.1| signal peptide peptidase SppA, 36K type [Clostridium thermocellum
           DSM 1313]
          Length = 326

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 68/280 (24%), Positives = 128/280 (45%), Gaps = 15/280 (5%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATAL 69
           +  S S      +P++  +++ G I DS             +E ++ IE +    S   +
Sbjct: 37  LNLSDSESSLPLTPYIGVVSVEGTIMDSNSTTSFLSNGYNHKETLKLIEDMKNSASNKGI 96

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETS 127
           ++ ++SPGG  Y  + ++  +++ K    +PV T +   A S GY IS AS+ + +   +
Sbjct: 97  LLYVNSPGGGVYESDELYLKLKEYKEETGRPVWTYMSNQACSGGYYISMASDKVFSNRNA 156

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
             GSIGV+     +K   D LG+    + S   KA  +   E+  +   ++Q +VD +Y 
Sbjct: 157 WTGSIGVIISLTNLKGLYDNLGIKGIYITSGRNKAMGAADLELTDEQRDILQSLVDEAYE 216

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            FV +V+E R +  ++   ++DGRI +  +A ++ LID +   +EV ++  A   +  I 
Sbjct: 217 QFVEIVAEGRKMTVEEVKRIADGRILSAKQALELNLIDEIATYDEVKEAFSAELGNVKIY 276

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
             K  +P          N        + I  + + K  G+
Sbjct: 277 TPKKKDPFGLSSLFSYINSLKPRSDTEIIAELIKAKGNGV 316


>gi|212635276|ref|YP_002311801.1| peptidase S49, SppA 67 kDa type:peptidase S49, SppA [Shewanella
           piezotolerans WP3]
 gi|212556760|gb|ACJ29214.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Shewanella
           piezotolerans WP3]
          Length = 613

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 115/247 (46%), Gaps = 13/247 (5%)

Query: 34  NSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
               V  I  +G+I            +   E + +   DDS  A+++ + SPGGSA+A E
Sbjct: 323 ADNKVGIIVAKGKILNGSQPAGEIGGESTSELLRKARFDDSIKAVVLRVDSPGGSAFASE 382

Query: 85  AIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
            I + +  +K   KP++  +   AAS GY IS +++ I A  T+L GSIG+       + 
Sbjct: 383 QIRQEVLALKAANKPIVVSMGSYAASGGYWISASADYIYATPTTLTGSIGIFGMVTTFED 442

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L  +GV    V +S      S    ++P+   ++Q  ++  Y  F+ LV+  R++  ++
Sbjct: 443 SLASIGVHTDGVATSDWAG-FSVTKGISPQISAVIQRHIERGYKDFISLVATERDMTLEQ 501

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPKNYWFC 261
              ++ GR+WTG +A ++GL+D +G  +        L          I+    P++ +  
Sbjct: 502 VDNIAQGRVWTGRKALELGLVDGIGDLQNAVTHAAELAKIDHFDTEVIQQELSPQDQFIQ 561

Query: 262 DLKNLSI 268
           ++   + 
Sbjct: 562 EMFASAA 568



 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 88/277 (31%), Gaps = 36/277 (12%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51
           +K+    +   L+   +V  S    ++        + + G I D +              
Sbjct: 23  RKLFLNLIFFGLIIALIVTLSSEETLKVEDGSALVLNLSGTIVDQKRRVDPLEAAMKSGS 82

Query: 52  -----------ELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRKPV 99
                      ++I+ +   S D   + L++ L    G+     ++I  A+   K     
Sbjct: 83  AKDGSGEILLSDVIDVVNNASSDARISQLVLDLGHLRGTGMSKLQSIGDALNNFKETGKP 142

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
           I           Y ++  ++ I       V   G+     Y K  LDKL +     +   
Sbjct: 143 IVAHANWFGQNQYFLASFADRIYLNPQGSVEIEGLGRYRQYFKSALDKLKIKAHVFRVGT 202

Query: 160 MKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDKTLVLSD 209
            K+   PF   +++  A +    +++  +  +   V ++R+I          +    L  
Sbjct: 203 FKSAVEPFIRDDMSDAAKEANLALLNDLWESYSTTVGQNRDIAASQLSLSAKEYLAELDK 262

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
               +   A  +  +D +   EE   S+       + 
Sbjct: 263 ADGQSSQMALNLKWVDELKTAEEFRLSMVDAVGKSAD 299


>gi|258544038|ref|ZP_05704272.1| 36K family signal peptide peptidase SppA [Cardiobacterium hominis
           ATCC 15826]
 gi|258520666|gb|EEV89525.1| 36K family signal peptide peptidase SppA [Cardiobacterium hominis
           ATCC 15826]
          Length = 319

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 62/289 (21%), Positives = 130/289 (44%), Gaps = 25/289 (8%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP-----------HVARIAIRGQIEDS-- 50
           + +K + +        L  +           S            H+A ++++G I     
Sbjct: 20  MRRKRRWKIFFRIFWALYWLLLLSFLFGLKGSDPKSEGASYRGKHLAVVSVQGMIASDME 79

Query: 51  ---QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK---PVITEVH 104
               ++I  +E+  ++  A A+I+ ++S GGS     A++RA++++K+ +   PV   + 
Sbjct: 80  ANADDIISGLEKAFKNPMAEAVILDINSGGGSPVQSGAVYRAVKRLKSERSDLPVYAVIA 139

Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164
           ++ AS  Y I+ +++ I A   S+VGSIGV+      +  L KLG+  +   +   K   
Sbjct: 140 DVGASGAYYIAASADEIYADPASIVGSIGVISYGLGYRDLLGKLGLDARVFTAGEHKNFL 199

Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLI 224
           +    ++P  V  MQ ++D+ +  F++ V + R     +T  +  G  WTG +A+ +GLI
Sbjct: 200 AGDKPLDPNEVAHMQALLDNMHAQFIKAVRDGRGERLKETPEMFSGLFWTGEQAQPLGLI 259

Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273
           D +G +  +  + Y            ++ P +      L+++   + + 
Sbjct: 260 DALGDKNTLRNAKYK------DLDFVEYKPDRTPLEKLLRDMGTEASVG 302


>gi|116328102|ref|YP_797822.1| periplasmic serine protease (ClpP class) [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331445|ref|YP_801163.1| periplasmic serine protease (ClpP class) [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116120846|gb|ABJ78889.1| Periplasmic serine protease (ClpP class) [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116125134|gb|ABJ76405.1| Periplasmic serine protease (ClpP class) [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 330

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 134/287 (46%), Gaps = 29/287 (10%)

Query: 31  VEDNSPHVARIAIRGQIEDS----------QELI----ERIERISRDDSATALIVSLSSP 76
              N   +  I I G I D             ++    +++E    D    A+I+ ++SP
Sbjct: 45  SGKNEDKILIIPIDGVISDEGEKTFFGGQEDSILAGVKKQLELAELDPEIKAVILKINSP 104

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GGS  A + +++ I + K +K  PV++   + AAS  Y IS A+++I+A  TS+ GSIGV
Sbjct: 105 GGSVTASDILYKEILQFKAKKKIPVVSLFMDTAASGAYYISMATDLIIAHPTSVTGSIGV 164

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +     VK  LDKLGV  +S++S   K   SP  +++P+  +++Q +VD  +  F  +V 
Sbjct: 165 ILSGINVKEGLDKLGVKDQSIRSGGNKTIGSPLEDLSPEQRKLLQSIVDDLFEKFFEVVK 224

Query: 195 ESR-NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-----IRK 248
             R      +   ++DGRI+T ++A   GLID +G  +   Q   AL   +        +
Sbjct: 225 NGRPGKNPAELRKIADGRIFTASQALGHGLIDKIGYFDNAVQETMALPNYRKTPGSNSPR 284

Query: 249 IKDWN----PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
           I  ++       N++      L   S +   + +  Q +      +W
Sbjct: 285 IIYYSQSTDKRANFYQVQSPELRQDSTISKILGIRSQVR---FLYIW 328


>gi|55377494|ref|YP_135344.1| signal peptide peptidase SppA [Haloarcula marismortui ATCC 43049]
 gi|55230219|gb|AAV45638.1| putative signal peptide peptidase SppA [Haloarcula marismortui ATCC
           43049]
          Length = 331

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 20/266 (7%)

Query: 37  HVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
           +VA +A+ G I                + +++E+IER   D  + AL++ L++PGG    
Sbjct: 67  NVAEVAVEGPISRDGGGGITSPPVGASADDIVEQIERADSDRGSEALLLKLNTPGGEIVP 126

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            E I   I   +   P I    ++ AS GY I+   + + A E S+VGSIGV+      K
Sbjct: 127 SEDIR--IAAEQFDGPTIAYATDVCASGGYDIAAGCDELWAREGSIVGSIGVVGSRVNAK 184

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
              D++G+S +   +   K    P  E+     + +Q +VD  Y  F+  V+E R +  +
Sbjct: 185 ELADRVGLSYEQFTAGEYKDAGVPLKEMTADEREYLQSIVDDYYDQFIDTVAEGREMDAE 244

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
                 + RI+ G EA++ GL+D +G +++V  SL           IK++ P +      
Sbjct: 245 ALKDT-EARIFLGDEAEERGLVDRLGTRDDVEASLEQRLG--EDVTIKEYEPERGLTGKL 301

Query: 263 LKN-LSISSLLEDTIPLMKQTKVQGL 287
                 ++  L   I  +    ++GL
Sbjct: 302 RGGAQQVAFALGAGIAGVADGDIEGL 327


>gi|14591350|ref|NP_143428.1| protease IV [Pyrococcus horikoshii OT3]
 gi|3257998|dbj|BAA30681.1| 334aa long hypothetical protease IV [Pyrococcus horikoshii OT3]
          Length = 334

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 117/240 (48%), Gaps = 3/240 (1%)

Query: 21  TVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGG 78
            +  F  S +V   +  VA + I G I+D     +IE I RI  +D+   ++V + SPGG
Sbjct: 73  FLKGFIASRNVTYTNVTVAILPIFGPIDDESALNVIEVIRRIRENDTIKGVLVWIESPGG 132

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
                  I+  ++K+   KPVI  V   A S GY I+CA+  IVA   + VGSIGV++ +
Sbjct: 133 FVGPVREIYIELKKLDYIKPVIAYVSGYAYSGGYYIACAAKEIVANPLADVGSIGVIYVH 192

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              + + +  G+ ++  K+ P K   + + ++ P+  +++Q  + + ++ F+++VSE RN
Sbjct: 193 FNAEKYYEMNGIEVEVFKTGPYKDMGADWRKLTPEERKIVQTQIQTYFNDFLQVVSEGRN 252

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           +  +     + GR W   +     L+D +G  +   + L  L   +    I        +
Sbjct: 253 MTVEDVKKFATGRTWFAKD-VNGTLVDKLGDLDLALKELLKLIGAKKANVIVYDVNRGKF 311


>gi|161503605|ref|YP_001570717.1| protease 4 [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160864952|gb|ABX21575.1| hypothetical protein SARI_01684 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 618

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 74/268 (27%), Positives = 122/268 (45%), Gaps = 14/268 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +A I   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +  VK   KPV+  +  MAAS GY IS  +N IVA+ ++L GSIG+    
Sbjct: 379 VNASEVIRAELAAVKAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  L  +GV    V +SP+    S    ++P+  QMMQ  ++  Y  F+ LV+E+R 
Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAE-ISMTKALSPEVQQMMQLSIEYGYKRFITLVAEARK 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++      A         +  +      
Sbjct: 498 RTPEQIDKIAQGHVWTGQDAKANGLVDKLGDFDDAVAK-AAALAKLKQWHLDYYQNEPTV 556

Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284
               + +++ S  ++L + I  M    +
Sbjct: 557 LDMIMDSMTGSVRAMLPEAIQAMLPAPL 584



 Score = 98.9 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +       S+ E  +     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90
                               +++  I +   D + T +++ L +  G+       I +A+
Sbjct: 79  ALGRQLFGASSNRLQENSLFDIVNTIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +    +   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQINLHGFATNGLYYKTLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  VS +R I   +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVSTNRQISPQQLFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             + DG       T   A    L+D +    +V ++L     
Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300


>gi|294054568|ref|YP_003548226.1| signal peptide peptidase SppA, 67K type [Coraliomargarita
           akajimensis DSM 45221]
 gi|293613901|gb|ADE54056.1| signal peptide peptidase SppA, 67K type [Coraliomargarita
           akajimensis DSM 45221]
          Length = 603

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 10/246 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGG 78
           S     +   +A +   G+I D            L + + R+  D    A+++ ++SPGG
Sbjct: 308 SKLTIKSGERIAVVYAEGEIIDGGKQYGSVAGDWLAQELRRLRNDSEVKAVVLRVNSPGG 367

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           SA A E I R  +++   KP+I  +   AAS GY IS  ++ IVA   ++ GSIGV    
Sbjct: 368 SAVASEIIQRETRRLAAEKPLIVSMGSYAASGGYWISAYADSIVAQPYTITGSIGVFGLV 427

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             ++    KL +    VK++P     S       + + ++Q   D  Y  FV  V++ R 
Sbjct: 428 FNIQEAAAKLAIQFDGVKTAPFADIHSLSRPRTEEEMALIQQFTDEIYTAFVDRVADGRA 487

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           +   K   L++GR+W+G  A+++ L+D +GG ++   +   L        I+    P ++
Sbjct: 488 LETSKVRELAEGRVWSGLRAQQLALVDHIGGLKQAIANAQDLAQL-DTESIEQIPSPSSF 546

Query: 259 WFCDLK 264
                +
Sbjct: 547 AESLAR 552



 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 111/311 (35%), Gaps = 39/311 (12%)

Query: 10  TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------------ 51
              + L ++       S    VE     V  + +   I+D+                   
Sbjct: 21  WGIIALFVLMGIFASLSEKPAVEVQDGSVLVLNLNTTIQDAPPSSSFEQAVQESLGGRPQ 80

Query: 52  ------ELIERIERISRDDSATALIVSLSSP---GGS-AYAGEAIFRAIQKVKNRKPVIT 101
                 ++I  IE  + DDS  AL++  +      GS       I ++++  +     + 
Sbjct: 81  SATYLLKVINTIEHAAGDDSIAALLLHGNLQQEGYGSGLALVSEIRQSLEAFQASGKQVH 140

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                 +   Y ++  +N I      L+   G+    P++   L+K G+ +++ +    K
Sbjct: 141 AYLVNPSQKDYYLASIANEIWINPFGLISLQGLASNAPFLGDTLEKYGIGVQTTRVGTYK 200

Query: 162 AEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS-DGRIWTGAEA 218
           +    F  + ++    +    ++   +   +   S +R +  ++   LS     +T  +A
Sbjct: 201 SAVELFTRNRMSEADREQKTALLSDLWTSLLVETSRARELSVEQLETLSAQQAFFTAEKA 260

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278
           +   LID VG  +E+   L          + +      ++   D ++ + +  LE  + +
Sbjct: 261 QSAHLIDRVGYLDELIDDLA--------TRYQASAKKHSFRQIDFEDYANAMALESKLTI 312

Query: 279 MKQTKVQGLWA 289
               ++  ++A
Sbjct: 313 KSGERIAVVYA 323


>gi|327399485|ref|YP_004340354.1| signal peptide peptidase SppA, 36K type [Hippea maritima DSM 10411]
 gi|327182114|gb|AEA34295.1| signal peptide peptidase SppA, 36K type [Hippea maritima DSM 10411]
          Length = 278

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 80/287 (27%), Positives = 147/287 (51%), Gaps = 12/287 (4%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERIS 61
           ++KK     V+L+++   V    ++ +V    P+VA ++I G I    +   I  + +I 
Sbjct: 1   MIKKATLAVVLLTIIVFIVSMVYFAFNV----PNVAVLSINGVINQKKTDNWIRALNKIK 56

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
           R+ +  A+++ + SPGG A + + ++ AI+ +   KPV+  +  + AS  Y  + ASN I
Sbjct: 57  RESNIKAVLLKIDSPGGEAVSSQRLYFAIKDLSKTKPVVCLIETIGASGAYYAASASNKI 116

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
           V+   S++GSIGVLF+   V     +LGV    VKS  +K   +PF E   +  +M+ +V
Sbjct: 117 VSYPASIIGSIGVLFETLNVAKLSKRLGVKAFVVKSGKLKDAGNPFREPTKEDEEMINNV 176

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           V+  Y+ F+  V+  RN+   K    ++G I++G  A K+GL+D  GG ++  + +  L 
Sbjct: 177 VNDIYNQFLDDVARGRNMESQKLKRYANGSIFSGRLALKIGLVDSTGGLKDAKKYIKRLT 236

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
             + I+       P            +  L E+ I L+++  V+ ++
Sbjct: 237 KIKKIKLYSFNRKP------STAGKLLKGLAENIIELLERPSVKAIY 277


>gi|28199904|ref|NP_780218.1| protease IV [Xylella fastidiosa Temecula1]
 gi|182682655|ref|YP_001830815.1| signal peptide peptidase SppA, 67K type [Xylella fastidiosa M23]
 gi|28058025|gb|AAO29867.1| protease IV [Xylella fastidiosa Temecula1]
 gi|182632765|gb|ACB93541.1| signal peptide peptidase SppA, 67K type [Xylella fastidiosa M23]
 gi|307578935|gb|ADN62904.1| signal peptide peptidase SppA, 67K type [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 633

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 125/267 (46%), Gaps = 11/267 (4%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVS 72
           +      S +   S  +A +   G+I            +     + ++  +D+  A+++ 
Sbjct: 320 LSLLDAQSALLGTSSQIAVVVAAGEIKGGDQPAGYIGGESTSMLLRKVRDEDAVKAVVLR 379

Query: 73  LSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
           ++SPGG  +A E I R +  ++   KPV+  + +MAAS GY IS  ++ I A  +++ GS
Sbjct: 380 VNSPGGEVFASEQIRREVVALRKVGKPVVVSMGDMAASGGYWISMDADRIYADPSTISGS 439

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IG+    P +   LDK+GV    V ++           ++P+  Q+ Q+V+D  Y  F  
Sbjct: 440 IGIFGLVPNITRTLDKVGVHTDGVGTTRFAGALDITRALDPQVGQIFQNVIDKGYADFTT 499

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIK 250
            V+++R+    +   ++ GR+W+GA+AK+ GL+D +GG  E            +    ++
Sbjct: 500 KVAQARHRSVKEIDSIARGRVWSGAQAKERGLVDELGGVREAITDAAKRAKLGEGHYSVR 559

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIP 277
             +   + +   + N+  + +    + 
Sbjct: 560 YVDKAVSPFMQFIINMMSTRIGNWALG 586



 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 89/251 (35%), Gaps = 16/251 (6%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAAS 109
           ++LI  IE  ++D     +++ L     S YA    +  A+Q +K+    +    E    
Sbjct: 99  RDLIRVIEAAAKDKKIERVLLDLDKLQPSGYASLREVVAALQNLKDSGKQLVAFSESMTQ 158

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPF- 167
           + YL++  ++ I       V   G+     Y +  L +KLGV +   +    K+   PF 
Sbjct: 159 SQYLLAAQADEIYLDPMGSVLLEGLAHYRQYFRKGLQEKLGVDVHLFRVGEYKSAAEPFV 218

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW--------TGAEA 218
               +  A +     ++  +  ++  ++++R +       + +                A
Sbjct: 219 LDAASADAKEADLFWMNDIWQRYLADIAKARKLDSAHLNTIVERLPQDIAANHGDLAKYA 278

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIR----KIKDWNPPKNYWFCDLKNLSISSLLED 274
               L+D +  +E+V Q +   GV         +  D+    +        L  SS +  
Sbjct: 279 LAQKLVDGLRTREQVNQLMIQRGVADKKADGGFRNVDFGTYLSLLDAQSALLGTSSQIAV 338

Query: 275 TIPLMKQTKVQ 285
            +   +     
Sbjct: 339 VVAAGEIKGGD 349


>gi|32034999|ref|ZP_00135077.1| COG0616: Periplasmic serine proteases (ClpP class) [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208734|ref|YP_001053959.1| protease 4 [Actinobacillus pleuropneumoniae L20]
 gi|126097526|gb|ABN74354.1| protease 4 [Actinobacillus pleuropneumoniae serovar 5b str. L20]
          Length = 618

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 124/253 (49%), Gaps = 12/253 (4%)

Query: 33  DNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                +A + + GQI           S  +++ + +   DD+   +I+ ++SPGGSA A 
Sbjct: 321 QAEHKIAVVNVEGQIISGESDASSSGSDTIVKLLRKAREDDNVRGVILRVNSPGGSALAS 380

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + +++++   KPV+  +  MAAS GY IS  S+ I+A+ T++ GSIG+       +
Sbjct: 381 EIIRQEVEEIQKAGKPVVASMGGMAASGGYWISATSDKIIASPTTITGSIGIFGLATSFE 440

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                LGV+   +  SP  +  SP   +  +  +++Q  +++ Y  F+ LVS  RN+   
Sbjct: 441 KTAKNLGVTEDGISLSPFASS-SPLKTLQKEQAEVIQISIENGYDRFLELVSRGRNMSKQ 499

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261
               ++ G++W+G +A K GL+D +G     + ++  L    +      +    ++ W  
Sbjct: 500 AVDKIAQGQVWSGEDALKHGLVDELGDFTAAYSAVTELVNQRRKANNEAEIEHFRSQWMI 559

Query: 262 DLKNLSISSLLED 274
           D  +    SLL+ 
Sbjct: 560 DSDDSLFGSLLKG 572



 Score = 83.1 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 96/289 (33%), Gaps = 46/289 (15%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV----------ARIAIRGQIEDSQ-- 51
           + + I+   + L  +   +V F++ + +   S               + + G + D+   
Sbjct: 11  IFRCIREFVMSLFFIIFVLVCFAFLALINQESGSTKHTNFIEKGALTLNLDGYLADNHDK 70

Query: 52  -----------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIF 87
                                  +++  I + ++D+  T L++ L+   G   A    I 
Sbjct: 71  YGDLHRLVQAELGNHEPIKISTFDVVRAIAKAAKDERITGLVLDLAYFQGGDSASLHFIG 130

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             I + K     +  V E  +   Y ++  ++ I   +   V    +     Y K  LDK
Sbjct: 131 NEINEFKKSGKPVIAVGEQYSQPQYYLASFADKIYLNKAGFVDIHALSHSNVYFKTLLDK 190

Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204
           +       +    K+   PF   +++ +A Q  Q  + S +H   + ++++R IP ++  
Sbjct: 191 IEAEPHIFRVGTYKSAVEPFIRDDMSAEAKQNAQTWLTSIWHNIRQDIAQNRKIPAEQVL 250

Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
                        +      A    L+  +    ++  +L         
Sbjct: 251 LDSQTYIEKYRQLKGDDAQYALSQQLVTDIATNVQIQTALVERFGKDKD 299


>gi|296328845|ref|ZP_06871356.1| S49 family protease IV [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296153966|gb|EFG94773.1| S49 family protease IV [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 551

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 121/273 (44%), Gaps = 13/273 (4%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70
                 ++      +   +A I + G+I          +   ++E+++ +    +   L+
Sbjct: 267 FGEYVSAYKRKKNKSKNTIAIINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLV 326

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + ++SPGGSA   E I++ ++K+    P+   + ++ AS GY I+     + A   +L G
Sbjct: 327 LRINSPGGSALESEKIYQKLKKL--DIPIYISMGDLCASGGYYIATVGKRLFANPVTLTG 384

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+  YP     ++KL V+++              S+++ ++ + +   ++  Y  F 
Sbjct: 385 SIGVVILYPEFTETINKLKVNMEGFSKGKGFDIFDVSSKLSEESKEKIIYSMNEVYSEFK 444

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
             V E+RNI  +    ++ GR+W G++AK+ GL+D +G   +   SL      +  +   
Sbjct: 445 EHVMEARNISEEDLEKIAGGRVWLGSQAKENGLVDELGSLNDCINSLVKDLELKDFK--L 502

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
            +   +      +  +    +  D I  ++  K
Sbjct: 503 TYIRGRKSIMEVVSAMKPQFIKSDIIEKIEMLK 535



 Score = 70.0 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 106/261 (40%), Gaps = 11/261 (4%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
           F+L K+K +  + SL  +  V F+ +  VED    ++ ++I   +   + +++ +E +  
Sbjct: 27  FILGKLKNKDKV-SLKGVKTVVFNLNELVEDYM--ISTVSINKTL-SHEAVLKALENLVN 82

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           D     +I+ +     S    E +    +K+   K +I         +  +   A+ I +
Sbjct: 83  DKKIEKIIIDVDEVDLSRVHIEELKEIFEKLSVNKEIIAIGTTFDEYSYQVALLANKIYM 142

Query: 123 AA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQ 179
              + S +   G  ++ PY K  L  LG+++ ++     K   E     +++ +  + + 
Sbjct: 143 LNTKQSCLYFRGYEYKEPYFKNILANLGITVNTLHIGDYKVAGESFSNDKMSEEKKESLI 202

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG--AEAKKVGLIDVVGGQEEVWQSL 237
           ++ ++ +  F+ LV E R    D T  +  G +      +A ++GLID +   EE+    
Sbjct: 203 NIKETLFQNFINLVKEKRK--VDITNEIFSGDLIFANSEKAIQLGLIDGLSTYEEIGIDY 260

Query: 238 YALGVDQSIRKIKDWNPPKNY 258
               VD               
Sbjct: 261 NEDTVDFGEYVSAYKRKKNKS 281


>gi|241762558|ref|ZP_04760633.1| signal peptide peptidase SppA, 67K type [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241372886|gb|EER62573.1| signal peptide peptidase SppA, 67K type [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 637

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 77/272 (28%), Positives = 128/272 (47%), Gaps = 11/272 (4%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSA 66
           S   +++  F  S+        +  + + G+I D +          +   I         
Sbjct: 297 SFKAVSLASFIGSNPPSSAGSAIGVVTVSGEIVDDETRSGQVSGSTISSLILDTLAKGDI 356

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAE 125
            AL+V + SPGGS  A E +  AI   K +  PVI  +  +AAS GY IS  ++ I A  
Sbjct: 357 KALVVRVDSPGGSVSAAEQMRSAILAAKAKGLPVIVSMGSVAASGGYWISTPADKIFADP 416

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
           +++ GSIGV    P  +  L K+G+S   VK++P+  +P  F    P+  Q+MQ  VD+ 
Sbjct: 417 STITGSIGVFSLIPTFQQTLHKIGLSADGVKTTPLSGQPDVFRGTTPEFDQLMQFGVDTI 476

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  F  +V+ SR++P DK   +++GR+W+G +AKK+GL+D  G  ++             
Sbjct: 477 YDRFTSIVASSRHLPLDKVREIAEGRVWSGVDAKKIGLVDQYGSLQDAVTEAAKRAHLDP 536

Query: 246 I-RKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
               ++  +   ++    LKNL      +  I
Sbjct: 537 SHTHMQFIDEEPSFVEMILKNLFQHQASDAKI 568



 Score = 69.6 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 95/282 (33%), Gaps = 39/282 (13%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSH----------VEDNSPHVARIAIRG--------- 45
           +K +    +++       V    ++               +     I   G         
Sbjct: 14  IKDVLALILLVLFFGAIFVGLCLTTKNGAISSRNLGAASAADGALLIDFSGNLVEKTEGT 73

Query: 46  ----QIEDS--------QELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQK 92
                I+D+        +E++  +E+ +R+    A+++      GG   A  A+  A+ K
Sbjct: 74  SFLDLIQDNNNQNEILLREVVYGLEQAARNPKIKAVVLDLSDFSGGGRAAISAVDNALDK 133

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           V+     +         A Y I+     I       V  +GV     Y K  LDKLGV  
Sbjct: 134 VRAAGKPVLSFAGFYNDARYRIAAHGTEIWLPNLGEVALLGVGGNQLYYKGLLDKLGVET 193

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
           K  +    K+   PF  +E +P A    Q + +S +   ++ ++ +R   +     L+  
Sbjct: 194 KIYRVGRFKSFVEPFTRTEQSPDAKAANQALANSLWQTTLQDIAHARPKAHVAEWALNPT 253

Query: 211 RIW-----TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
                       A+  G+ID +G   +    + +L       
Sbjct: 254 SFLKSGHSFAELAQSAGMIDHIGNAIDFGNRVASLVGKDKQP 295


>gi|281418096|ref|ZP_06249116.1| signal peptide peptidase SppA, 36K type [Clostridium thermocellum
           JW20]
 gi|281409498|gb|EFB39756.1| signal peptide peptidase SppA, 36K type [Clostridium thermocellum
           JW20]
          Length = 326

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 68/280 (24%), Positives = 128/280 (45%), Gaps = 15/280 (5%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATAL 69
           +  S S      +P++  +++ G I DS             +E ++ IE +    S   +
Sbjct: 37  LNLSDSKSSLPLTPYIGVVSVEGTIMDSNSTTSFLSNGYNHKETLKLIEDMKNSASNKGI 96

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETS 127
           ++ ++SPGG  Y  + ++  +++ K    +PV T +   A S GY IS AS+ + +   +
Sbjct: 97  LLYVNSPGGGVYESDELYLKLKEYKEETGRPVWTYMSNQACSGGYYISMASDKVFSNRNA 156

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
             GSIGV+     +K   D LG+    + S   KA  +   E+  +   ++Q +VD +Y 
Sbjct: 157 WTGSIGVIISLTNLKGLYDNLGIKGIYITSGRNKAMGAADLELTDEQRDILQSLVDEAYE 216

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            FV +V+E R +  ++   ++DGRI +  +A ++ LID +   +EV ++  A   +  I 
Sbjct: 217 QFVEIVAEGRKMTVEEVKRIADGRILSAKQALELNLIDEIATYDEVKEAFSAELGNVKIY 276

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
             K  +P          N        + I  + + K  G+
Sbjct: 277 TPKKKDPFGLSSLFSYINSLKPRSDTEIIAELIKAKGNGV 316


>gi|94266274|ref|ZP_01289979.1| Peptidase S49, SppA [delta proteobacterium MLMS-1]
 gi|93453125|gb|EAT03596.1| Peptidase S49, SppA [delta proteobacterium MLMS-1]
          Length = 306

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 115/222 (51%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           I  + +L+ ++    R D+  A+++ + SPGG+  A + +F  +++V  +KPV+  +  +
Sbjct: 61  ITSADQLLAQLAEFGRRDNIKAIVLRIDSPGGAVGASQELFAEVKRVNQQKPVVAAMGSV 120

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           AAS G   +  +  IVA   +L GSIGV+ ++  ++   +++G   +++KS  +K   +P
Sbjct: 121 AASGGLYAALGAERIVANPGTLTGSIGVIIKFANLEELFERIGYRSETIKSVDLKDSGAP 180

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
              + P+  QM+Q++VD  +  F+  V+  R++         DGRI++G +A ++GL+D 
Sbjct: 181 DRPLAPEERQMLQEMVDDVHDQFIADVAADRDLSTTTVRAFGDGRIFSGNQALELGLVDQ 240

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
           +G   +       LG     R  +   PP+  +      L  
Sbjct: 241 LGNFNDAAMLAAELGGLDPSRVPELIYPPRRDFSLLSLLLGS 282


>gi|241889101|ref|ZP_04776405.1| putative signal peptide peptidase SppA [Gemella haemolysans ATCC
           10379]
 gi|241864350|gb|EER68728.1| putative signal peptide peptidase SppA [Gemella haemolysans ATCC
           10379]
          Length = 325

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 112/228 (49%), Gaps = 9/228 (3%)

Query: 30  HVEDNSPHVARIAIRGQI-------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
              D+S  + +I+I G+I            ++ +I+    + +  A+++S++SPGG  Y 
Sbjct: 59  KKGDSSEVIQKISIDGEINAEMTNTYSRGSVLNQIKEAKGNPNVKAILLSVNSPGGGVYE 118

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
              ++ A++   + K V   + + AAS GY +S  +  I     +  GS+GV+  Y   +
Sbjct: 119 TAELYNALK--NSGKDVYVSMKKTAASGGYYVSTPAKKIFVNTETTTGSLGVIMSYVSAQ 176

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
            FL+  G+  ++++S   KA      ++     +++Q+    +Y  FV+ ++E R++  D
Sbjct: 177 KFLNDHGIKQETIRSGEQKAVGGLTEDLPESTRKILQEQNKEAYERFVKAIAEGRHLSED 236

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
           +   L+DGR +TG +A    L D VG ++E+   +       +   I+
Sbjct: 237 EVKKLADGRTYTGTQAVANKLADKVGTEDELIDLIKEEKGLSNPTVIE 284


>gi|121602669|ref|YP_988704.1| S49 family peptidase [Bartonella bacilliformis KC583]
 gi|120614846|gb|ABM45447.1| peptidase, S49 family [Bartonella bacilliformis KC583]
          Length = 283

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 116/268 (43%), Gaps = 19/268 (7%)

Query: 37  HVARIAIRGQIEDSQELIER----------IERISRDDSATALIVSLSSPGGSAYAGEAI 86
           ++  + + G I DS  L+ R          +++   D  A A+ + ++SPGGS      I
Sbjct: 19  NIPVVRLHGAIMDSTSLMARTLSLSRCADLLDKAFSDKRAPAVALVINSPGGSPVQSRLI 78

Query: 87  FRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           F+ I+ +  + +K V+  V ++AAS GY+I+CA + I A  TS+VGSIGV+         
Sbjct: 79  FQRIRDLADEKKKQVLVFVEDVAASGGYMIACAGDEIFADATSIVGSIGVVSASFGFPEL 138

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K+GV  +   +   K    PF       +  ++ +    +  F+ LV E R       
Sbjct: 139 LKKIGVERRIYTAGKNKVILDPFQPEKKTGIDHLKSLQLEVHQTFIDLVKERRESKLSDD 198

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             +  G  WTG     +GLID +G    V +  +         K++  +P K+       
Sbjct: 199 PDIFTGMFWTGKRGIGLGLIDGLGDVRSVVKERFG-----DKTKLRLISPSKSLLGPKTP 253

Query: 265 NLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           +   + ++   +  +     +   A+W 
Sbjct: 254 SGISADVVNMAVDSLLTVAEER--ALWQ 279


>gi|295399533|ref|ZP_06809515.1| signal peptide peptidase SppA, 36K type [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978999|gb|EFG54595.1| signal peptide peptidase SppA, 36K type [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 336

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 70/277 (25%), Positives = 132/277 (47%), Gaps = 25/277 (9%)

Query: 37  HVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYA 82
            +  + + G I+D+              +  +  IE+   DD+  A+I+ + SPGG    
Sbjct: 61  KIVVLEVNGVIQDAGDTEALFTASGYDHRAFLRMIEQAKNDDTVKAIILRVDSPGGGVVE 120

Query: 83  GEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
              I   + K+K     P+   +  MAAS GY IS A++ I A+  +L GS+GV+ Q   
Sbjct: 121 SAEIHDQLLKLKKETKKPIYVSMGTMAASGGYYISTAADKIFASPETLTGSLGVIIQSFN 180

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
            +    K GV + ++KS P K   +P  ++  +  +++Q ++ +SY  FV+++SE R++P
Sbjct: 181 YEGLAKKYGVELVTIKSGPYKDIMNPARKMTEEEKEILQRLIHNSYEGFVKVISEGRHLP 240

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
             +   ++DGRI+ G +AK++ LID  G  E+   ++         + +K      ++ F
Sbjct: 241 ESEVRKIADGRIYDGRQAKQLKLIDEFGYLEDTIAAIKKDYDLADAQVVKY---TNDFSF 297

Query: 261 CDLKNLSISSLLE------DTIPLMKQTKVQGLWAVW 291
             L  + +S ++       + I L        L  ++
Sbjct: 298 GSLFKMELSRMIAPKHEATELIKLFSNPSSPRLMYLY 334


>gi|91793256|ref|YP_562907.1| signal peptide peptidase SppA, 67K type [Shewanella denitrificans
           OS217]
 gi|91715258|gb|ABE55184.1| signal peptide peptidase SppA, 67K type [Shewanella denitrificans
           OS217]
          Length = 613

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 14/268 (5%)

Query: 35  SPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
              V  I  +G I            +   E + ++  DD   AL++ + SPGGSA+A E 
Sbjct: 324 KDAVGIIVAKGNILNGHQQAGDIGGESTSELLRKVRFDDKIKALVLRVDSPGGSAFASEQ 383

Query: 86  IFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           I + +  ++   KPV+  +  MAAS GY IS +++ I A  T+L GSIG+   +   +  
Sbjct: 384 IRQEVLAIQAAGKPVVVSMGSMAASGGYWISASADYIYATPTTLTGSIGIFGMFATFEEA 443

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L ++G++   V +S           +N     ++Q  ++  YH F+ LV+  RN+  ++ 
Sbjct: 444 LAQIGINSDGVATSDWAGLSVA-RPLNSNVEAVIQRHIERGYHEFISLVATERNMTLEQV 502

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFCDL 263
             ++ GR+WTG +A ++GL+D +G  +        L    +   K+ +        F   
Sbjct: 503 DAIAQGRVWTGKKALELGLVDEIGDMDIAVAKAAELAKMSTFDTKLIEQELTPEQLFVQQ 562

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWAVW 291
                ++ L  ++   K + ++ L A W
Sbjct: 563 VFSVTAAYLPQSLQ--KTSVMETLLAQW 588



 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/317 (13%), Positives = 93/317 (29%), Gaps = 36/317 (11%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR--- 62
           +K+    +  SL+ L  V       +         + + G I D +  +E +E       
Sbjct: 23  RKLILNLIFFSLLALIAVALLSEEAIVIEPDSALVLNLSGAIVDQKHFVEPLEAALNKGD 82

Query: 63  ----------------------DDSATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPV 99
                                 D     +++ L++    S     AI  A+ + K     
Sbjct: 83  EDNPNTEILLADILYVIHNATQDKRIKTIVLDLANLHSASVSKMTAIGDALNEFKATGKT 142

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
           +           Y ++  ++ I      +V   G+     Y K  L+KL ++    +   
Sbjct: 143 VVAHGNYFNQNQYFLASYASKIYLNNQGMVSLDGLSRYRLYYKSALEKLKINTHVFRVGT 202

Query: 160 MKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSD 209
            K+   PF   +++         ++   +  +  +VS++R I  D            L  
Sbjct: 203 FKSAVEPFIRDDMSEADKASSNALLSDIWSSYSHIVSQNRGISPDALVLSPERYLSELDT 262

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
               +   A  +  +D +   E+   ++ A        +        +Y           
Sbjct: 263 NEGDSAKMALTMKWVDELVSAEDFRLAMIASIGAAKDAQHFRQVKFADYLSLVKPLTRFI 322

Query: 270 SLLEDTIPLMKQTKVQG 286
                 I + K   + G
Sbjct: 323 EKDAVGIIVAKGNILNG 339


>gi|293390212|ref|ZP_06634546.1| signal peptide peptidase SppA, 67K type [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950746|gb|EFE00865.1| signal peptide peptidase SppA, 67K type [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 626

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 63/256 (24%), Positives = 118/256 (46%), Gaps = 13/256 (5%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSL 73
           +         D    +A + + G I D +          +   + +   D    A+++ +
Sbjct: 313 LASLPDRMSGDTKNKIAVVNVEGAIIDGETDEENVGGDTIANLLRKAYDDKDVKAVVLRV 372

Query: 74  SSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           +SPGGSA+A E I + +  ++   KPV+  +  MAAS GY IS  ++ IVA + ++ GSI
Sbjct: 373 NSPGGSAFASEIIRQELSHLQQAGKPVVVSMGGMAASGGYWISSTADYIVADKNTITGSI 432

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           G+    P  +  + K+GVS   VK+S +    S FS ++ +   ++Q  ++  Y  F+  
Sbjct: 433 GIFAVLPTFEKTIKKIGVSADGVKTSDLALG-SAFSPLSSELNDVLQLEIEHGYDEFLTK 491

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG--VDQSIRKIK 250
           VS+ R++   +   ++ G++W G+EA +  L+D +G           L         KI+
Sbjct: 492 VSQGRHLSKAQVDKIAQGQVWLGSEAIEHKLLDELGDLNTALGKAMELVNEKLDENSKIQ 551

Query: 251 DWNPPKNYWFCDLKNL 266
           +      +   D  + 
Sbjct: 552 EEGFSVEWLDDDSGSF 567



 Score = 70.8 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 88/249 (35%), Gaps = 16/249 (6%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA-IQKVKNRKPVITEVHEMAASA 110
           +++  I+  + DD    L++ L+   G          A I+  K     +    +    A
Sbjct: 96  DVVYAIDSAALDDKVRGLVLDLNYFQGGDLPSLEFVGASIENFKKNGKQVIAYSDNYNRA 155

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168
            Y ++  ++ +       V   G++ +  Y K  LD L V+    +    K+   PF  +
Sbjct: 156 QYFLASYADEVYMNPVGTVSIDGLVQENLYYKDLLDSLEVNPHVFRVGTYKSAVEPFLRN 215

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-----------KTLVLS-DGRIWTGA 216
           +++ +A   ++  +   ++ + + V+E+RNI  +           +   L  D   +   
Sbjct: 216 DMSDEAKTNLRRWLGIMWNNYKQRVAENRNIKEEAVAPNAHTYLTELKALQGDMTAYVKQ 275

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
                G++D     ++   +L+    D+  + +       +       +      + +  
Sbjct: 276 RKLINGVLDRF-NLDKKLTALFGENEDKQPKMVDYDTYLASLPDRMSGDTKNKIAVVNVE 334

Query: 277 PLMKQTKVQ 285
             +   +  
Sbjct: 335 GAIIDGETD 343


>gi|325981472|ref|YP_004293874.1| peptidase S49 [Nitrosomonas sp. AL212]
 gi|325530991|gb|ADZ25712.1| peptidase S49 [Nitrosomonas sp. AL212]
          Length = 314

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 58/250 (23%), Positives = 110/250 (44%), Gaps = 8/250 (3%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIERISRDDSATALIVSLSSPGG 78
            +     V     H A I +RG I       + ++   +    +D +   +I+ ++SPGG
Sbjct: 54  GWIDDGKVRLTDKHTALIDLRGTITADSMNSADKINSSLRSAFQDKNTKGVILRINSPGG 113

Query: 79  SAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           S      I   I++++ + P I     V ++ AS GY I+ A++ I   + SL+GSIGVL
Sbjct: 114 SPVQAGYINDEIRRLRAKYPDIPLYAIVGDICASGGYYIAVAADKIYVDKASLIGSIGVL 173

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                    L+KLG+  + + +   K+   PFS ++P  +     ++   +  F+++V +
Sbjct: 174 MDSFGFTGTLEKLGIERRLLTAGENKSFLDPFSPLDPVQIDHATKLLREVHEQFIQVVKQ 233

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
            R         +  G IWTG ++  +GL D +G  E V + +            +  +  
Sbjct: 234 GRGERLKNDPDIFSGIIWTGQKSIDLGLTDAIGNAEYVAREIIKAETLTDFTPREGLSDV 293

Query: 256 KNYWFCDLKN 265
            +  F  + +
Sbjct: 294 FSKRFSQIIS 303


>gi|19704208|ref|NP_603770.1| protease IV [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|19714432|gb|AAL95069.1| Protease IV [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 494

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 111/237 (46%), Gaps = 11/237 (4%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70
                 ++      +   +A I + G+I          +   ++E+++ +    +   L+
Sbjct: 210 FGEYVSAYKRKKNKSKNTIAIINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLV 269

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + ++SPGGSA   E I++ ++K+    P+   + ++ AS GY I+     + A   +L G
Sbjct: 270 LRINSPGGSALESEKIYQKLKKL--DIPIYISMGDLCASGGYYIATVGKRLFANPVTLTG 327

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+  YP     ++KL V+++              S+++ ++ + +   ++  Y  F 
Sbjct: 328 SIGVVILYPEFTETINKLKVNMEGFSKGKGFDIFDVSSKLSEESKEKIIYSMNEVYSEFK 387

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
             V E+RNI  +    ++ GR+W G++AK+ GL+D +G   +   SL      +  +
Sbjct: 388 EHVMEARNISEEDLEKIAGGRVWLGSQAKENGLVDELGSLNDCINSLVKDLELKDFK 444



 Score = 68.1 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 88/226 (38%), Gaps = 8/226 (3%)

Query: 38  VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
           ++ ++I   +   + +++ +E +  D     +I+ +     S    E +    +K+   K
Sbjct: 2   ISTVSINKTL-SHEAVLKALENLVNDKKIEKIIIDVDEVDLSRVHIEELKEIFEKLSVNK 60

Query: 98  PVITEVHEMAASAGYLISCASNIIVAA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
            +I         +  +   A+ I +   + S +   G  ++ PY K  L  LG+++ ++ 
Sbjct: 61  EIIAIGTTFDEYSYQVALLANKIYMLNTKQSCLYFRGYEYKEPYFKNILANLGITVNTLH 120

Query: 157 SSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
               K   E     +++ +  + + ++ ++ +  F+ LV E R    D T  +  G +  
Sbjct: 121 IGDYKVAGESFSNDKMSEEKKESLINIKETLFQNFINLVKEKRK--VDITNEIFSGDLIF 178

Query: 215 G--AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
               +A ++GLID +   EE+        VD               
Sbjct: 179 ANSEKAIQLGLIDGLSTYEEIGIDYNEDTVDFGEYVSAYKRKKNKS 224


>gi|34762510|ref|ZP_00143508.1| Putative signal peptide peptidase sppA [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887843|gb|EAA24913.1| Putative signal peptide peptidase sppA [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 502

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 111/237 (46%), Gaps = 11/237 (4%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70
                 ++      +   +A I + G+I          +   ++E+++ +    +   L+
Sbjct: 218 FLEYVSAYKRKKNKSKNTIAIINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLV 277

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + ++SPGGSA   E I++ ++K+    P+   + ++ AS GY I+     + A   +L G
Sbjct: 278 LRINSPGGSALESEKIYQKLKKL--EIPIYISMGDLCASGGYYIATIGKKLFANPVTLTG 335

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+  YP     ++KL V+++             FS+++ ++ + +   ++  Y  F 
Sbjct: 336 SIGVVILYPEFTETINKLKVNMEGFSKGKGFDIFDVFSKLSEESKEKIIYSMNEVYSEFK 395

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
             V E+RNI  +    ++ GR+W G++AK  GL+D +G   +   SL      +  +
Sbjct: 396 EHVMEARNISEEDLEKIAGGRVWLGSQAKANGLVDELGSLNDCIDSLAKDLELKDFK 452



 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 97/251 (38%), Gaps = 13/251 (5%)

Query: 38  VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
           ++ I+I   +   + L++ +E +  D     +I+ +     S    E I    +K+   K
Sbjct: 10  ISTISINKTL-SHETLLKALENLVNDKKIEKIIIDVDEVDLSRVHIEEIKEIFEKLSVNK 68

Query: 98  PVITEVHEMAASAGYLISCASNIIVAA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
            +I         +  +   A+ I +   + S +   G  ++ PY K  L  LGV++ ++ 
Sbjct: 69  EIIAIGTIFDEYSYQVALLANKIYMLNTKQSCLYFRGYEYKEPYFKNILATLGVTVNTLH 128

Query: 157 SSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
               K   E     +++ +  + + ++ ++ +  F+ L+ E R    D T  +  G +  
Sbjct: 129 IGDYKVAGESFSNDKMSEEKKESLINIKETLFQNFINLIKEKRK--VDITNEILSGDLIF 186

Query: 215 G--AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
               +A ++GLID +   EE       +  ++      ++           KN      L
Sbjct: 187 ANSEKAIQLGLIDGLSTYEE-----IGIDYNEDTVDFLEYVSAYKRKKNKSKNTIAIINL 241

Query: 273 EDTIPLMKQTK 283
           E  I   +  +
Sbjct: 242 EGEIDTRESKE 252


>gi|257458110|ref|ZP_05623264.1| signal peptide peptidase SppA, 67K type [Treponema vincentii ATCC
           35580]
 gi|257444404|gb|EEV19493.1| signal peptide peptidase SppA, 67K type [Treponema vincentii ATCC
           35580]
          Length = 606

 Score =  125 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 107/254 (42%), Gaps = 12/254 (4%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQE----------LIERIERISRDDSATALIVSLSSPGGS 79
             ++    +  I + G I  + +          L +  ++ + DDS  A+++ + S GG 
Sbjct: 318 KKKETDNQIGVIYLTGSITGTADNTADNADSPTLTDLFDQAADDDSIKAVVLRIDSGGGE 377

Query: 80  AYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
             A E I R++ ++  +  KPV+  +  +AAS  Y I+ +++ +  +  ++ GSIGV   
Sbjct: 378 VNASEDIRRSVDRLSKKIGKPVVVSMGSIAASGAYWIASSADYVFCSPYTITGSIGVFAV 437

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
            P ++  + +         S+  +   S F     +     +  V  +Y  F+  V++ R
Sbjct: 438 SPTIQNAVKEYFGIHVDGISATGRMPYSLFRNPTDEEKTQSELEVMHTYSVFLDKVAQGR 497

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           N+P      L+ G+I++G  AK++ L D +GG  +           +    +K       
Sbjct: 498 NLPRATVEELAQGKIYSGTRAKELQLADELGGFTDAVNYAATKAGIKETYSLKVLYKEPP 557

Query: 258 YWFCDLKNLSISSL 271
                LK L   + 
Sbjct: 558 VADEILKTLLAENA 571



 Score = 63.1 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 77/235 (32%), Gaps = 14/235 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
            ++ + + R + D   TA+++ LS   G S+     +  A+ + K+    +         
Sbjct: 95  SDITDALRRAAHDRRITAVLLDLSGLYGISSGHFTELKTALLEYKDSNKPLYAFSTGYGL 154

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE--PSPF 167
             Y I+  ++ I   +   V   G   +  +      K G+   +V +   K+       
Sbjct: 155 GRYYIASFADHIYLDQMGEVNLSGFYTESLFYGEMEKKFGIQWNAVHAGAFKSMAETYTR 214

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAK 219
           + ++         V    +  +++ ++ +R    D            L   +  +   A 
Sbjct: 215 TGMSAGVHSNHLSVFTDLWQTYLQDIAANRASDADTLEAYAVHYNDALQKAKGDSAQAAL 274

Query: 220 KVGLIDVVGGQEE---VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
              LI  +G  EE       L     + S R   +++     +     +  I  +
Sbjct: 275 DANLITDIGTYEECGVALGVLDEETYNLSSRDFINYDDYNKTFKKKETDNQIGVI 329


>gi|71901706|ref|ZP_00683780.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Xylella
           fastidiosa Ann-1]
 gi|71728523|gb|EAO30680.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Xylella
           fastidiosa Ann-1]
          Length = 630

 Score =  125 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 125/267 (46%), Gaps = 11/267 (4%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVS 72
           +      S +   S  +A +   G+I            +     + ++  +D+  A+++ 
Sbjct: 317 LSLLDAQSALLGTSSQIAVVVAAGEIKGGDQPAGYIGGESTSMLLRKVRDEDAVKAVVLR 376

Query: 73  LSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
           ++SPGG  +A E I R +  ++   KPV+  + +MAAS GY IS  ++ I A  +++ GS
Sbjct: 377 VNSPGGEVFASEQIRREVVALRKVGKPVVVSMGDMAASGGYWISMDADRIYADPSTISGS 436

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IG+    P +   LDK+GV    V ++           ++P+  Q+ Q+V+D  Y  F  
Sbjct: 437 IGIFGLVPNITRTLDKVGVHTDGVGTTRFAGALDITRALDPQVGQIFQNVIDKGYADFTT 496

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIK 250
            V+++R+    +   ++ GR+W+GA+AK+ GL+D +GG  E            +    ++
Sbjct: 497 KVAQARHRSVKEIDSIARGRVWSGAQAKERGLVDELGGVREAITDAAKRAKLGEGHYSVR 556

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIP 277
             +   + +   + N+  + +    + 
Sbjct: 557 YVDKAVSPFMQFIINMMSTRIGNWALG 583



 Score = 76.2 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 104/326 (31%), Gaps = 41/326 (12%)

Query: 1   MEFVLKKIKTRYVM-LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--------- 50
           M F  + I         L+ + +         + +      IA +G + +          
Sbjct: 21  MNFTRRLILNLVFFGFLLLMMLIGMTHGLKGKQLDDRTTLLIAPQGALVEQFSADPASRA 80

Query: 51  ---------------QELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVK 94
                          ++LI  IE  ++D     +++ L     S YA    I  A+Q +K
Sbjct: 81  LAKATGDKSGQEVQLRDLIRVIEAAAKDKKVERVLLDLDKLQPSGYASLREIVAALQNLK 140

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL-DKLGVSIK 153
                +    E    + YL++  ++ I       V   G+     Y +  L +KLGV + 
Sbjct: 141 GSGKQLVAFSESMTQSQYLLAAQADEIYLDPMGSVFLEGLAHYRQYFRKGLQEKLGVDVH 200

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF     +  A +     ++  +  ++  ++++R +       + +  
Sbjct: 201 LFRVGEYKSAAEPFVLDAASADAKEADLFWMNDIWQRYLADIAKARKLDSAHLNTIVERL 260

Query: 212 IW--------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR----KIKDWNPPKNYW 259
                         A    L+D +  +E+V Q +   GV         +  D+    +  
Sbjct: 261 PQDIAANHGDLAKYALAQKLVDGLKTREQVNQLMIQRGVADKKADGGFRNVDFGTYLSLL 320

Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQ 285
                 L  SS +   +   +     
Sbjct: 321 DAQSALLGTSSQIAVVVAAGEIKGGD 346


>gi|148241743|ref|YP_001226900.1| periplasmic serine proteases (ClpP class) [Synechococcus sp.
           RCC307]
 gi|147850053|emb|CAK27547.1| Periplasmic serine proteases (ClpP class) [Synechococcus sp.
           RCC307]
          Length = 261

 Score =  125 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 124/256 (48%), Gaps = 13/256 (5%)

Query: 41  IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK- 97
           I++ G I  +  + +++ + ++        L++ + SPGG+    + I +A+ +++    
Sbjct: 16  ISLTGPIAGAARKRVVKALRQVEE-RKFPVLLLRIDSPGGTVGDSQEIHQALLRLRESGC 74

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
            V+     ++AS G  + CA++ IVA   ++ GSIGV+ +   ++  L+++G+  ++VKS
Sbjct: 75  QVVASYGNISASGGVYVGCAADRIVANAGTITGSIGVILRGNNLEKLLERVGIRFETVKS 134

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
              K   SP   ++     ++Q ++DSSY  FV  V++ R +  +     +DGR+++GA+
Sbjct: 135 GLYKDILSPDKPLSEGERSILQALIDSSYSQFVAAVAQGRKLSEETVRTFADGRVFSGAQ 194

Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
           A ++G++D++G ++   +    L                       +   +   L   + 
Sbjct: 195 ALELGMVDLLGDEDTARREAARLAGLDEE--------KSQPVELGKERAGLVQKLRQELQ 246

Query: 278 LMKQTKVQGLWAVWNP 293
           L      Q LW ++ P
Sbjct: 247 LQLAWGGQPLW-LFRP 261


>gi|145631778|ref|ZP_01787538.1| protease IV [Haemophilus influenzae R3021]
 gi|144982568|gb|EDJ90118.1| protease IV [Haemophilus influenzae R3021]
          Length = 289

 Score =  125 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 69/250 (27%), Positives = 124/250 (49%), Gaps = 14/250 (5%)

Query: 42  AIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
            + G I D +          +   + +   D+S  A+I+ ++SPGGSA+A E I +  + 
Sbjct: 2   NVEGTIIDGESDEENAGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEIIRQETEN 61

Query: 93  VKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           ++   KPVI  +  MAAS GY IS  ++ I+A   ++ GSIG+   +P  +  + K+GV+
Sbjct: 62  LQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFTMFPTFENSIKKIGVN 121

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
              V ++ +    S FS +      + Q  ++  Y  F+ +VS+ R +   +   L+ G+
Sbjct: 122 ADGVSTTELAKT-SAFSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVDKLAQGQ 180

Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           +W G++A + GL+D +G   E       L   +    ++D++     WF D     IS+L
Sbjct: 181 VWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNVSLISTL 237

Query: 272 LEDTIPLMKQ 281
           L DT    ++
Sbjct: 238 LRDTKKGAQE 247


>gi|255532961|ref|YP_003093333.1| signal peptide peptidase SppA, 67K type [Pedobacter heparinus DSM
           2366]
 gi|255345945|gb|ACU05271.1| signal peptide peptidase SppA, 67K type [Pedobacter heparinus DSM
           2366]
          Length = 590

 Score =  125 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 108/248 (43%), Gaps = 11/248 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPGG 78
                  S  VA I   G I           S+ + + I +   D    A+++ ++SPGG
Sbjct: 300 KDQPTSASQKVAIIYANGDIMGGDGSDHQIGSERISKAIRKARLDTDIKAVVLRVNSPGG 359

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           SA A + I+R I   K  KPVI    ++AAS GY I+CA++ I     ++ GSIGV    
Sbjct: 360 SALASDVIWREIVLTKKIKPVIASFGDVAASGGYYIACAADSIFVQPNTITGSIGVFGII 419

Query: 139 PYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           P  +    DKLG++   VK+       S    +      ++Q+ V+  Y  F+  V++ R
Sbjct: 420 PNFQKLFNDKLGITFDGVKTGKYADIMSVDRPMTAGERLIVQNDVNRVYDSFITRVADGR 479

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
                    +  GR+W G +A ++GL D  G   +   +       +    I ++   ++
Sbjct: 480 KRTKAYIDSIGGGRVWVGTDAVRIGLADRTGNFNDAIIAAAKKAKIKD-YSIVEYPEMRD 538

Query: 258 YWFCDLKN 265
            +   + N
Sbjct: 539 PFKSLMDN 546



 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 101/275 (36%), Gaps = 25/275 (9%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------ 51
           V+         + L+   V        V  NS  V  + +   I +              
Sbjct: 16  VISLALFLVFFVLLIIGIVKTSLKEQKVSVNSNSVLLLNLDQSITERTADDPLSRLPLVG 75

Query: 52  ----------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
                     ++I  +++   DD+   + ++++SP         I  A+   K  K  I 
Sbjct: 76  SDEDKSIGFNDVIRALQKAKTDDNIKCVYINVTSPQAGFATMREIRDALIDFKTSKKKII 135

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
              E+     Y ++ A++ I       +   G+  +  + K  LDKLG+  + V+    K
Sbjct: 136 AYSEVYTQGAYYLASAADKIYLNPEGALEFKGLKSETMFFKGALDKLGIEAQIVRVGNYK 195

Query: 162 AEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL-SDGRIWTGAEA 218
           +   PF   +++ K  + +   +   Y  F+  +++SRNI  +    +  D +I    +A
Sbjct: 196 SAVEPFFAEKMSDKNREQVTAYLHGLYDTFLEGIAKSRNISTETLYQIADDYKIRQPQDA 255

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
               ++D +  ++++   L  L   +    +   +
Sbjct: 256 VAYKMVDELKYKDQIIDELKTLSGKEKKNDLTTIS 290


>gi|226496121|ref|NP_001146232.1| hypothetical protein LOC100279804 [Zea mays]
 gi|224028317|gb|ACN33234.1| unknown [Zea mays]
          Length = 672

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 118/259 (45%), Gaps = 16/259 (6%)

Query: 32  EDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSLSSPGG 78
           +     +A I   G I               +++LIE+I  +   +   A+I+ + SPGG
Sbjct: 365 QGGGEQIAIIRASGSITRTRSPLSAPSSGIVAEQLIEKIRTVRESEKYKAVILRIDSPGG 424

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            A A + ++R I+ + N KPV+  + ++AAS GY ++ A+ +IVA + +L GSIGV+   
Sbjct: 425 DALASDLMWREIRLLANSKPVVASMSDVAASGGYYMAMAAPVIVAEKLTLTGSIGVVTGK 484

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKA-EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
             ++   +++  + + +          +    + P   ++ +    ++Y  F    + SR
Sbjct: 485 FCLQKLYERIDFNKEIISKGRYAELNVNDQRPLRPDEAELFEKSAQNAYALFRDKAAMSR 544

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--KDWNPP 255
           ++  D+   ++ GR+W+G +A   GL+D VGG  +              +KI   + + P
Sbjct: 545 SMSVDQMESVAQGRVWSGHDAFSRGLVDSVGGLSQALAIAKQKANIPKDKKIQLVEVSKP 604

Query: 256 KNYWFCDLKNLSISSLLED 274
                  L  +  S L  D
Sbjct: 605 SPSLPEILSGIGGSLLGVD 623



 Score = 83.5 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 92/252 (36%), Gaps = 13/252 (5%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSA 66
           + + +               V  + +RG+I D             ++ E   + + D   
Sbjct: 102 LAVKLRMLVAPPWQRVRKGSVLNMKLRGEISDQLKTRFSSGLSLPQICENFVKAAYDPRI 161

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
           + + + +          + I R I   K     +     +     Y ++CA   + A  +
Sbjct: 162 SGIYLHIEPLRCGWAKVDEIRRHIVDFKKSGKFVVGYMPVCGEKEYYLACACGELYAPPS 221

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDS 184
           + V   G+  Q  +++  L+K+G+  +  +    K+  +      ++ +  +M+  ++D+
Sbjct: 222 AYVALFGLTVQQTFLRGVLEKVGIEPEIQRIGKYKSAGDQLARKSMSNEVREMLAALLDN 281

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            Y  ++  +S +     ++     +  ++  A  K+ G +  +   +EV   L      +
Sbjct: 282 IYGNWLETISSTHGKKKEEIEGFINSGVYQVARLKEEGWVTDLLYDDEVMTLLKERVGQK 341

Query: 245 SIRKIKDWNPPK 256
             + ++  +  K
Sbjct: 342 DKKSLRMVDYSK 353


>gi|116073506|ref|ZP_01470768.1| Periplasmic serine protease (ClpP class) [Synechococcus sp. RS9916]
 gi|116068811|gb|EAU74563.1| Periplasmic serine protease (ClpP class) [Synechococcus sp. RS9916]
          Length = 269

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 125/256 (48%), Gaps = 5/256 (1%)

Query: 41  IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK- 97
           IAI G I     + +++ +  + + +   AL++ + SPGG+    + I  A+ +++ +  
Sbjct: 16  IAIEGAIASGTRKRVLKALREVEQRE-FPALLLRIDSPGGTVGDSQEIHAALLRLREKGC 74

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
            V+     ++AS G  I  A+  IV+    + GSIGV+ +   +   L+++G+  ++VKS
Sbjct: 75  HVVASFGNISASGGVYIGVAAEKIVSNPGCITGSIGVILRGNNLSKLLERVGIRFETVKS 134

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
              K   SP   ++    +++Q ++DSSY  FV  V+E R +  D     +DGR+++GA+
Sbjct: 135 GAYKDILSPDRALSADERELLQALIDSSYAQFVDAVAEGRGLSPDTVRKFADGRVFSGAQ 194

Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
            K++GL+D +G +E        L       K      PK      L   S+ + L + + 
Sbjct: 195 GKELGLVDELGDEERARALAAELADLDEDCKPITLGKPKKKLLASLPGSSVVARLAEMLE 254

Query: 278 LMKQTKVQGLWAVWNP 293
                  Q LW ++ P
Sbjct: 255 TELSHSGQALW-LYRP 269


>gi|312109911|ref|YP_003988227.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. Y4.1MC1]
 gi|311215012|gb|ADP73616.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. Y4.1MC1]
          Length = 336

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/277 (25%), Positives = 133/277 (48%), Gaps = 25/277 (9%)

Query: 37  HVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYA 82
            +  + + G I+D+              +  +  IE+   DD+  A+I+ + SPGG    
Sbjct: 61  KIVVLEVNGVIQDAGDTEALFTASGYNHRAFLRMIEQAKNDDTVKAIILRVDSPGGGVVE 120

Query: 83  GEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
              I   + K+K     P+   +  MAAS GY IS A++ I A+  +L GS+GV+ Q   
Sbjct: 121 SAEIHDQLLKLKKETKKPIYVSMGTMAASGGYYISTAADKIFASPETLTGSLGVIIQSFN 180

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
            +    K GV + ++KS P K   +P  ++  +  +++Q ++ +SY  FV+++SE R++P
Sbjct: 181 YEGLAKKYGVELVTIKSGPYKDIMNPARKMTEEEKEILQRLIHNSYEGFVKVISEGRHLP 240

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
             +   ++DGRI+ G +AK++ LID  G  E+   ++       + + +K      ++ F
Sbjct: 241 ESEVRKIADGRIYDGRQAKQLKLIDEFGYLEDTIAAIKKDYDLANAQVVKY---TNDFSF 297

Query: 261 CDLKNLSISSLLE------DTIPLMKQTKVQGLWAVW 291
             L  + +S ++       + I L        L  ++
Sbjct: 298 GSLFKMELSRMIAPKHEATELIKLFSNPSSPRLMYLY 334


>gi|83644957|ref|YP_433392.1| periplasmic serine protease (ClpP class) [Hahella chejuensis KCTC
           2396]
 gi|83633000|gb|ABC28967.1| Periplasmic serine protease (ClpP class) [Hahella chejuensis KCTC
           2396]
          Length = 329

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 124/267 (46%), Gaps = 15/267 (5%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISRDDSA 66
           ++ L  + + +      +      PH A I + G I  S+E     ++  +     ++SA
Sbjct: 52  FLYLFFIVIALSPGVGKNVAARTEPHTAVIEVNGVIAASEEANADAIVSALRDAFEEESA 111

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCASNIIVA 123
            A+I+ ++SPGGS      ++  I ++      K V   + ++ AS  Y I+ A++ I A
Sbjct: 112 KAVILRINSPGGSPVQAGYVYDEIGRLKGEYPDKKVYAVIMDIGASGAYYIAAAADEIYA 171

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
            + SLVGSIGV          +DKLGV  +   +   K+   PF  V     ++ Q V++
Sbjct: 172 DKASLVGSIGVTASGFGFVDAMDKLGVERRIFTAGEHKSFLDPFVPVKEDERELWQGVLN 231

Query: 184 SSYHWFVRLVSESRNIP-YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           +++  F+  V + R    +    +L  G IW+G +A  +GLID +G    V + +     
Sbjct: 232 TTHKQFIEQVEKGRGDRIHKDNPLLYSGMIWSGEQALGLGLIDGLGSSGFVAREVVK--- 288

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSIS 269
              + K+ ++ P +N +   L  L +S
Sbjct: 289 ---VEKLINYTPKRNPFDELLGKLGVS 312


>gi|90408812|ref|ZP_01216955.1| putative protease IV [Psychromonas sp. CNPT3]
 gi|90310074|gb|EAS38216.1| putative protease IV [Psychromonas sp. CNPT3]
          Length = 616

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/277 (23%), Positives = 130/277 (46%), Gaps = 13/277 (4%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSS 75
              ++   +    +A I   G+I + +            + ++    +    A+++ L S
Sbjct: 315 VISNNAETNQEDIIALIHGSGEIINGESNNSVMAGQSFSQLLQDALDNKRVKAVVIRLDS 374

Query: 76  PGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           PGGSA A E I + +  +K   K V+  +  ++AS GY I+ A++ IVA  T+L GSIG+
Sbjct: 375 PGGSATASEKIRQKVLALKKSGKKVVISMASVSASGGYWIASAADHIVAYPTTLTGSIGI 434

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
              Y   +  L+KLG+    V ++P+     P   ++     ++Q  ++  Y  F+ +VS
Sbjct: 435 FALYASAEKALNKLGIYNDGVGTAPLSGL-DPTRALDKDIADLLQMAIEHGYQQFLTVVS 493

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           E R++  +    ++ GR+WTG +AK++GL+D +G  E+  +    L       ++K    
Sbjct: 494 EGRHMSVEDVDKIAQGRVWTGTDAKRLGLVDQLGNLEDAIKKAAQLAKL-DSYQVKSIQM 552

Query: 255 PKNYWFCDLKNLSISSL-LEDTIPLMKQTKVQGLWAV 290
             +       ++    + L    PL+    ++ L ++
Sbjct: 553 KLSPVEQMFNDVFAQGVQLITPQPLLNSPILKTLQSL 589



 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 89/288 (30%), Gaps = 41/288 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------- 50
           +            +L ++ L  +     +  E N+  +  +   G+I +           
Sbjct: 15  INITRLFFLNSIFILVIIGLLFLLNQSPNEAEINNNSILTLNFSGRIVEQKTPKEFSDEI 74

Query: 51  ----------------QELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIFRAIQKV 93
                            ++I  I     D   TA+++ L      S      I  A+ + 
Sbjct: 75  SKQLFSSEQTQQEYQVDDIINSIHHAQNDPKITAILLQLDDLQSASLNQIMDIGAALNQF 134

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +    +  +   YL++  ++ I      +V   G      Y K  LDKL ++  
Sbjct: 135 KTSNKPVIASADNYSQIQYLLASYADNIALDPQGIVYLPGFSVYRLYFKDALDKLLITPH 194

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL------ 205
             K    K+   PF  + ++ ++    +  +   +  +++ V   R              
Sbjct: 195 IFKVGTYKSFVEPFTQNHMSAQSKDANERWLGQLWQTYIQTVLSQRKDNKKINAQSISPK 254

Query: 206 ------VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
                      +  +   A +VGL+D +   ++V  +L         +
Sbjct: 255 IAALKIAFKKAKGDSALYALQVGLVDDLTSTDDVLNALKKDAKQAGNK 302


>gi|15602536|ref|NP_245608.1| hypothetical protein PM0671 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720949|gb|AAK02755.1| SppA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 627

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 65/269 (24%), Positives = 125/269 (46%), Gaps = 16/269 (5%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSL 73
           +        E+    +A + + G I D +          +   + +   DD+  A+I+ +
Sbjct: 315 LSLLPDRLSEEGQYKIAVVNVEGAIIDGESDEHEVGGDTIARLLRQAHDDDNVKAVILRV 374

Query: 74  SSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           +SPGGSA+A E I + +  ++   KPV+  +  MAAS GY IS  ++ I+A + ++ GSI
Sbjct: 375 NSPGGSAFASEIIRQEVDNLQALGKPVVVSMGAMAASGGYWISSTADYIIADKNTITGSI 434

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           G+   +P  +  L K+G+S   V +S + +        +  +  +  + ++S Y  F+ +
Sbjct: 435 GIFALFPTFEKTLKKVGISADGVSTSALSSSSRFSGLSSEMSDILQLE-IESGYDKFLSV 493

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           VS  R +  ++   ++ G+IW G EA K  L+D +G      +    L       ++ D 
Sbjct: 494 VSRGRGMTVEEVDKVAQGKIWLGEEAVKHNLVDELGHFNLAVEKASELAN-----QLLDE 548

Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
               +Y+          + L D +P +K+
Sbjct: 549 KEKVDYFALQWMVEDEQNFLSDLLPTLKR 577



 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 119/329 (36%), Gaps = 44/329 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVE-------DNSPHVARIAIRGQIEDSQ-- 51
           + F+ + +     +  ++ +  V   +    +       +N  +   + + G + D++  
Sbjct: 15  LNFIRELVMNIVFLFFVLLVAAVVGIFFHSNKIQHPMMLENEKYALLLNLDGYLADNREE 74

Query: 52  -----------------------ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIF 87
                                  +++  I+   +DD  + L++ L+   G    A E + 
Sbjct: 75  SMSWQKALKELDNQHVPRQISTFDIVYMIDHAKKDDRISGLVLDLNFFEGADLPALEYVG 134

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
           + I   K  +  +    +    + YL++  ++ I       V   G+  +  Y K  L+ 
Sbjct: 135 QTINAFKESQKPVIAFADNLGQSQYLLASYADEIYINPIGQVDITGLRQENLYFKSMLEN 194

Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204
           L V+    +    K+   PF    ++P+A   + + + + +H + ++V+++R I  D   
Sbjct: 195 LDVTAHIFRVGTYKSAVEPFLRDNMSPEAKTDLSEWLGAMWHNYKQIVAKNRQIDPDDVL 254

Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
                    L   +  + A  ++  L+  +  + E+ + L           I+  +  ++
Sbjct: 255 PASSKYIQALKMLKGDSTAYTQQRQLVTGLANRLEIDEKLLERFGQDKNDNIRLIDY-ED 313

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           Y       LS     +  +  ++   + G
Sbjct: 314 YLSLLPDRLSEEGQYKIAVVNVEGAIIDG 342


>gi|260753451|ref|YP_003226344.1| signal peptide peptidase SppA, 67K type [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552814|gb|ACV75760.1| signal peptide peptidase SppA, 67K type [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 637

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 75/272 (27%), Positives = 128/272 (47%), Gaps = 11/272 (4%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSA 66
           S   +++  F  ++        +  + + G+I D +          +   I         
Sbjct: 297 SFKAVSLASFIGANPPSSAGSAIGVVTVSGEIVDDETRSGQVSGSTISSLILDTLAKGDI 356

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAE 125
            AL+V + SPGGS  A E +  AI   K +  PVI  +  +AAS GY IS  ++ I A  
Sbjct: 357 KALVVRVDSPGGSVSAAEQMRSAILAAKAKGLPVIVSMGSVAASGGYWISTPADKIFADP 416

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
           +++ GSIGV    P  +  L K+G+S   VK++P+  +P  F    P+  Q+MQ  VD+ 
Sbjct: 417 STITGSIGVFSLIPTFQQTLHKIGLSADGVKTTPLSGQPDVFRGTTPEFDQLMQFGVDTI 476

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  F  +V+ SR++P +K   +++GR+W+G +AKK+GL+D  G  ++             
Sbjct: 477 YDRFTSIVASSRHLPLEKVREIAEGRVWSGVDAKKIGLVDQYGSLQDAVTEAAKRAHLDP 536

Query: 246 I-RKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
               ++  +   ++    LKNL      +  I
Sbjct: 537 SHTHMQFIDEEPSFVEMILKNLFQHQASDAKI 568



 Score = 69.3 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 95/282 (33%), Gaps = 39/282 (13%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSH----------VEDNSPHVARIAIRG--------- 45
           +K +    +++       V    ++               +     I   G         
Sbjct: 14  IKDVLALILLVLFFGAIFVGLCLTTKNGAISSRNLGAASAADGALLIDFSGNLVEKAEGT 73

Query: 46  ----QIEDS--------QELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQK 92
                I+D+        ++++  +E+ +R+    A+++      GG   A  A+  A+ K
Sbjct: 74  NFLDLIQDNNNQNEILLRDVVYGLEQAARNPKIKAVVLDLSDFSGGGRAAISAVDNALDK 133

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           V+     +         A Y I+     I       V  +GV     Y K  LDKLGV  
Sbjct: 134 VRAAGKPVLSFAGFYNDARYRIAAHGTEIWLPNLGEVALLGVGGNQLYYKGLLDKLGVET 193

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
           K  +    K+   PF  +E +P A    Q + +S +   ++ ++ +R   +     L+  
Sbjct: 194 KIYRVGRFKSFVEPFTRTEQSPDAKAANQALANSLWQTTLQDIAHARPKAHVAEWALNPT 253

Query: 211 RIW-----TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
                       A+  G+ID +G   +    + +L       
Sbjct: 254 SFLKSGHSFAELAQSAGIIDHIGNAIDFGTRVASLVGKDKQP 295


>gi|123966585|ref|YP_001011666.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus str. MIT 9515]
 gi|123200951|gb|ABM72559.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus str. MIT 9515]
          Length = 269

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/264 (26%), Positives = 129/264 (48%), Gaps = 5/264 (1%)

Query: 33  DNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            +   +ARI I   I  S    +I+ +++I  D    ALI+ + SPGG+    + I+ AI
Sbjct: 8   KSKKRMARIVIDEPITSSTRVSVIKALKQI-EDREFPALILRIDSPGGTVGDSQEIYSAI 66

Query: 91  QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           ++++ +   V+     ++AS G  I  ASN IVA   ++ GSIGV+ +   +   L+K+G
Sbjct: 67  KRLREKGCKVVASFGNISASGGVYIGVASNKIVANPGTITGSIGVIIRGNNLSELLNKIG 126

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +  ++VKS   K   SP   ++ +  +++Q ++D SY  F   V+E R++P +     +D
Sbjct: 127 IKFETVKSGIYKDILSPDKPLSDEGREILQGLIDESYKQFTEAVAEGRDLPVEDVKKFAD 186

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           GRI+TG +AKK+GL+D +G +    +    +       +   +   K      +    I 
Sbjct: 187 GRIFTGTQAKKLGLVDEIGDEFTARELAAEMVKIDPKIQPVTFGKKKKKILGLIPGSKII 246

Query: 270 SLLEDTIPLMKQTKVQGLWAVWNP 293
             +   I   +      +  ++ P
Sbjct: 247 EKIIQNI-FFEVNSTNKILWLYKP 269


>gi|114569418|ref|YP_756098.1| signal peptide peptidase SppA, 36K type [Maricaulis maris MCS10]
 gi|114339880|gb|ABI65160.1| signal peptide peptidase SppA, 36K type [Maricaulis maris MCS10]
          Length = 595

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 127/270 (47%), Gaps = 19/270 (7%)

Query: 33  DNSPHVARIAIRGQIE---------DSQELI------ERIERISRDDSATALIVSLSSPG 77
           +N P +A I  +G I            +E+I      E I   + D+S  A+++ + SPG
Sbjct: 296 NNGPIIALIEGQGAIVTGTPTGSPFGGEEMIGGDFMSEAILAAADDNSVRAIVIRVDSPG 355

Query: 78  GSAYAGEAIFRAI-QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GSA A + ++ AI +  +  KPVI  +  MAAS GY I+  ++ ++A ET+L GSIGVL 
Sbjct: 356 GSAIASDQVWHAITRAREAGKPVIVSMASMAASGGYYIAAPADYVLAHETTLTGSIGVLG 415

Query: 137 QYPYVKPFLDKLGVSIKSVKSS-PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
               ++   D +G++ +++          S   E         +  +   Y  F + V++
Sbjct: 416 GKIVLEGTFDLVGLNAETIAVGGEYATAFSAQQEWTDSQRAAYRSQMSDIYDDFTQRVAD 475

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--KDWN 253
            R++P ++ L ++ GRIWTGA+A  +GL+D +GG  +   +        +  +I  + + 
Sbjct: 476 GRDLPLERVLEIARGRIWTGAQALDLGLVDEIGGLRDAIGAARQFAGIDAEARIRLRRYP 535

Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
             ++      +   +S+    +   +    
Sbjct: 536 AQRSPMEAFQELFGVSAETAQSAARLNALM 565



 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 95/298 (31%), Gaps = 24/298 (8%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIR---GQIEDSQ------------ 51
           + T  + + L+   +      +  E   P  A  + +    G+++               
Sbjct: 20  LLTLVLGVFLIFAMIGALVEGAQTETALPQTAMVLELDLRDGRLDSPSRSPFGFSDPLST 79

Query: 52  -ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
            EL+  +ER   DD    L +  +  G S  A E +  AI+  +     +    +     
Sbjct: 80  VELVRTLERAESDDRVAGLFIRANEFGMSPGAAEELRGAIEDFRAAGKFVVTHAQGFEGT 139

Query: 111 GYLISCA---SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV--SIKSVKSSPMKAEPS 165
                 A   S+ I   +T+   + G+  +  ++             +        A   
Sbjct: 140 SVTGYFAVSGSDQIWLQDTTSFTAAGLASETMFLGGLFAHFDAVPQFEQFHEYKGAANTY 199

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
             S+      +  +  + S Y   V  ++E R +  D    + +    T  EA+ +GLID
Sbjct: 200 TQSDFTEAHREATESFLGSIYDTAVLRIAEDRGLQADALRAMFESAPHTAEEAQSLGLID 259

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
            +G   E  +++             +             N  I +L+E    ++  T 
Sbjct: 260 QLGQVVEAREAV--RARLDGEASFVEIAQYHAQAAPTWNNGPIIALIEGQGAIVTGTP 315


>gi|301156103|emb|CBW15574.1| protease IV (signal peptide peptidase) [Haemophilus parainfluenzae
           T3T1]
          Length = 620

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 117/236 (49%), Gaps = 11/236 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGG 78
            S   +    VA + + G I D +          +   + +   ++   A+++ ++SPGG
Sbjct: 319 FSVDPNEKNIVAVVNVEGTIIDGESNEESAGGDTIARLLRQAHDNEKVKAVVLRVNSPGG 378

Query: 79  SAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           SA+A E I +  + ++   KPV+  +  MAAS GY IS  ++ IVA + ++ GSIG+   
Sbjct: 379 SAFASEIIRQETENLQKAGKPVVVSMGGMAASGGYWISSTADYIVADKNTITGSIGIFAL 438

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +P  +  + K+G+S   V ++ +    +  S +N     + Q  +++ Y  F+ +VS  R
Sbjct: 439 FPTFENTIKKMGMSTDGVATTDLAETSAL-SPLNKNTQDIYQLGIENGYDRFLEVVSRGR 497

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
            +  DK   ++ G++W G +A K  L+D +G  +   + + AL      + +  ++
Sbjct: 498 QLSKDKVDKIAQGQVWLGQDAHKNALVDELGDIDVAIEKVGALVNQNPDKYMDSFS 553



 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 86/237 (36%), Gaps = 34/237 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVE-----DNSPHVARIAIRGQIEDSQ---- 51
           + F+ + +   +V L  V   +         +             + + G + D+     
Sbjct: 15  LNFI-RNLVMNFVFLLFVLALIFLVGLFGDGKKSQVLSGDQGALYLNLTGYLADNTEDML 73

Query: 52  ---------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRA 89
                                ++++ I     D+    L+++L+   G      E + +A
Sbjct: 74  SWEKELQRLNNEKVSYKYSTFDVVQSILSAKDDERIRGLVLNLNDFEGGDLPSLEYVGKA 133

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           IQ  K  +  +    +    + Y ++  ++ I       VG  G+ ++  Y K  L+KL 
Sbjct: 134 IQSFKESEKPVIAYADNYTQSQYFLASFADEIYLNPIGQVGIQGLRYENLYFKSMLEKLE 193

Query: 150 VSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           ++    +    K+   PF   +++P+A   MQ  +   +  +++ +  +R+I  +  
Sbjct: 194 ITPHIFRVGTYKSAVEPFLRDDMSPEARANMQKWLGGMWQNYMQTLMVNRHITANDV 250


>gi|254448114|ref|ZP_05061577.1| peptidase S49 [gamma proteobacterium HTCC5015]
 gi|198262240|gb|EDY86522.1| peptidase S49 [gamma proteobacterium HTCC5015]
          Length = 318

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/278 (24%), Positives = 126/278 (45%), Gaps = 16/278 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVE-DNSPHVARIAIRGQIEDSQE-----LIERI 57
           +   + T   +  L+ ++   + +S         HVA + + G I    +     L+  +
Sbjct: 33  IFMWMLTLLYLTVLILVSSGAWQFSGKSNPIKGEHVAVVQVNGIIAPDSDASADMLVPAM 92

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLI 114
                +++A AL++ ++SPGGS    E ++  I ++      KPV   + ++ AS  Y I
Sbjct: 93  RDAMENENAKALLLRINSPGGSPVQSELVYSEILRLRSEYPEKPVYAVIEDIGASGAYYI 152

Query: 115 SCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           + A+  I A E+S+VGSIGV           L+KLGV  +   S   KA   PF     +
Sbjct: 153 ASAAENIYAIESSIVGSIGVTSGGSFGFVKALEKLGVERRIYTSGENKAFLDPFLPEKQQ 212

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
            ++  + +++S +  F++ V++ R         L  G +WTG E+ ++GLID  G    +
Sbjct: 213 DIERYESMLNSVHQQFIKAVTDERGERLKDDGELFSGYVWTGEESLELGLIDGFGDMRGI 272

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
            + ++         +I D+    ++     +NL  S+ 
Sbjct: 273 AREMFE------TDEIVDYTRQADFLTRFAENLGASAA 304


>gi|149181105|ref|ZP_01859605.1| protease IV (signal peptide peptidase) [Bacillus sp. SG-1]
 gi|148851192|gb|EDL65342.1| protease IV (signal peptide peptidase) [Bacillus sp. SG-1]
          Length = 354

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 131/284 (46%), Gaps = 25/284 (8%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSS 75
                +  +A + + G I+D                  +E++ R+  DDS  A+I+ ++S
Sbjct: 72  EEGSAAKRIAVLEVEGVIQDVNTATSIFESPGYNHELFMEQLRRVQEDDSIRAVILKVNS 131

Query: 76  PGGSAYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           PGG       I   + +++   +KP+   +  MAAS GY I+  +  I A+  +L GS+G
Sbjct: 132 PGGGVVESAQIHEKLVEIQEEAKKPIYVSMGSMAASGGYYIAAPAEKIFASRETLTGSLG 191

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V+ Q        +K GV   ++KS P K   SP  E+  +  +++Q +V++SY  FV ++
Sbjct: 192 VIMQSINYSELAEKYGVDFVTIKSGPHKDIMSPTREMTEEEREILQSMVNNSYEGFVDVI 251

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           ++ R +  D+   ++DGR++ G +AK++ LID  G  E+V   +      +  + I    
Sbjct: 252 AQGRGMSEDQVKKIADGRVYDGIQAKEINLIDDFGYIEDVIAQMKKDLKLEDAQVI---E 308

Query: 254 PPKNYWFCDLKNLSISSL------LEDTIPLMKQTKVQGLWAVW 291
              +  F  L ++    L          + ++ Q     L  ++
Sbjct: 309 YTNDGGFASLLDMGAKRLAGGDIEAAALMKILSQPNSPRLMYLY 352


>gi|108762546|ref|YP_635601.1| signal peptide peptidase SppA, 67K type [Myxococcus xanthus DK
           1622]
 gi|108466426|gb|ABF91611.1| signal peptide peptidase SppA, 67K type [Myxococcus xanthus DK
           1622]
          Length = 680

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 117/282 (41%), Gaps = 20/282 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQIE---------------DSQELIERIERISRDDSATALIVS 72
           +     +   +A +   G++                 ++ +   + + + D    A++  
Sbjct: 368 AGKPNVSGNTIALVYGVGEVMRGKNQSNPLSGGQSMGAESVAAALRKATEDSRVKAIVFR 427

Query: 73  LSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
           + SPGGS  A + + R +Q+  +  KPVI  +   AAS GY ++  ++ IVA   +L GS
Sbjct: 428 VDSPGGSYVASDTVRREVQRAKEAGKPVIVTMGSYAASGGYFVAMEADRIVAHPGTLTGS 487

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IGV         F +KLGV+  SV +          ++  P+    M   +D  Y  F  
Sbjct: 488 IGVYAGKFVTAGFWEKLGVNFDSVAAGKNAEMFGSDADYTPEQQARMDASLDRIYADFTT 547

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI-K 250
             + SR +P +K   L+ GR+WTG +A   GL+D +GG  +  +         +  ++  
Sbjct: 548 RAAASRKLPLEKLQSLAKGRVWTGEDALAHGLVDALGGYPKALELAKEAAKLPADARVNV 607

Query: 251 DWNPPKNY---WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +  P K        +L   +  +  +D   +   +    L A
Sbjct: 608 EVYPRKKPASALLSELLGQTGDNSEDDATSISVLSPWTTLVA 649



 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 101/276 (36%), Gaps = 26/276 (9%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------------- 49
           L  +    V+  +  + ++  + +S     S  V  + +   + +               
Sbjct: 93  LAFVGALSVLFVVGLVGLMLLASASKPGVPSNLVLELDLEDPLSEHGGGESLMGAFGEEP 152

Query: 50  --SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
              ++++E +E+   D    +L+V +  P G+  A + +  A++  + +        +  
Sbjct: 153 TTVRDVVEALEKAGDDARVKSLLVRIGHP-GTPAATQELRDAVKAFRAKGKKAVAYSDSF 211

Query: 108 -----ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
                ++ GY ++ A + I    +  V   G+ F+ P+ +    +LGV+ +       K 
Sbjct: 212 GELGNSTLGYYLASAFDEIYIQPSGDVNINGLAFELPFAREAFTRLGVTPRYFARYEYKN 271

Query: 163 EPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKK 220
             + +   +      +  +   +S +   VR ++E R +  D    L D       EA +
Sbjct: 272 AINSYTEQDFTAPHREATEGFTNSLFGQIVRGIAEDRGLTEDVVRGLIDKAPLMAQEAME 331

Query: 221 VGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPP 255
             L+  +  ++EV   L     +      +K +   
Sbjct: 332 AKLVTGLRYRDEVLGGLKEQAGEGARFLYVKKYLER 367


>gi|257388867|ref|YP_003178640.1| signal peptide peptidase SppA, 36K type [Halomicrobium mukohataei
           DSM 12286]
 gi|257171174|gb|ACV48933.1| signal peptide peptidase SppA, 36K type [Halomicrobium mukohataei
           DSM 12286]
          Length = 331

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/266 (24%), Positives = 120/266 (45%), Gaps = 20/266 (7%)

Query: 37  HVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYA 82
           +VA +A+ G I                 ++++E+IER   D +  AL+V L++PGG    
Sbjct: 67  NVAEVAVEGPISRDGGGSLASPPVGARAEDIVEQIERADDDSAVDALLVELNTPGGEIVP 126

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            E I  A ++     P +    ++ AS GY I+   + + A E S+VGSIGV+      K
Sbjct: 127 SEDIRLAAERF--DGPTVGYATDVCASGGYDIAAGCDELWAREGSIVGSIGVIGSRVNAK 184

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
              D++G+S +   +   K   +P  E   +  + +Q +VD  Y  FV  V+E R +   
Sbjct: 185 ELADRVGLSYEQFTAGTFKDAGTPLKEFEQEEREYLQSIVDDYYEQFVDTVAEGRELDAA 244

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           +    ++ RI+ G+EA ++GL+D +G + +V   L     +     ++ + P +      
Sbjct: 245 EIRD-TEARIFLGSEAHELGLVDEIGTRRDVEAKLEEQLGEP--VTVEAFEPSRGLAGRL 301

Query: 263 LKNLSISS-LLEDTIPLMKQTKVQGL 287
                 ++  L   +       + GL
Sbjct: 302 QTGAQTAAFALGAGVASAFDGDLDGL 327


>gi|226326247|ref|ZP_03801765.1| hypothetical protein PROPEN_00089 [Proteus penneri ATCC 35198]
 gi|225205325|gb|EEG87679.1| hypothetical protein PROPEN_00089 [Proteus penneri ATCC 35198]
          Length = 404

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 69/269 (25%), Positives = 132/269 (49%), Gaps = 14/269 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGG 78
           SS   ++  ++A + ++G I D + +           +I +   D +  AL++ ++SPGG
Sbjct: 107 SSLPANDEGNIAVVVVQGAIIDGESIPGSAGGTTIANQIRQARLDPNIKALVLRVNSPGG 166

Query: 79  SAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           S  A E I   +    + +K V+  +  +AAS GY IS  +N I+A+ ++L GSIG+   
Sbjct: 167 SVSASEQIRSEVAAFKQQKKHVVVSMGGLAASGGYWISTPANKIIASPSTLTGSIGIFGV 226

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
               +  L+ +GV    V +SP+       +++  +  +++Q  ++S Y  F+ LV+ESR
Sbjct: 227 INTFENSLESIGVYTDGVTTSPLAGLSVT-NKLPEEFAELLQLNIESGYKTFIHLVAESR 285

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
                +   ++ GR+W G +AK VGL+D  G  ++   +   +      + + DW  P+ 
Sbjct: 286 KKTPAQIDRIAQGRVWVGIDAKNVGLVDEFGDFDDAIDAAAKMAKI--DQPVVDWMKPEL 343

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
                +  +S+SS  +  +P   Q  +  
Sbjct: 344 SLSEQII-MSLSSNAKALLPDPLQAYIPA 371


>gi|115448437|ref|NP_001047998.1| Os02g0728100 [Oryza sativa Japonica Group]
 gi|46390611|dbj|BAD16095.1| putative protease IV [Oryza sativa Japonica Group]
 gi|113537529|dbj|BAF09912.1| Os02g0728100 [Oryza sativa Japonica Group]
          Length = 674

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 130/285 (45%), Gaps = 19/285 (6%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALI 70
              W+  ++     +A I   G I               +++LIE+I  +   +   A+I
Sbjct: 359 VSKWTLGLQGGGEQIAVIRASGSITRTRSPLSVPSSGIIAEQLIEKIRTVRESEKYKAVI 418

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + + SPGG A A + ++R I+ + + KPV+  + ++AAS GY ++ A+ +IVA + +L G
Sbjct: 419 LRIDSPGGDALASDLMWREIRLLADTKPVVASMSDVAASGGYYMAMAAPVIVAEKLTLTG 478

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP-FSEVNPKAVQMMQDVVDSSYHWF 189
           SIGV+     ++   +++  + + +         +     + P   ++ +    ++Y  F
Sbjct: 479 SIGVVTGKFILQKLYERIDFNKEIISKGRYAELNAADQRPLRPDEAELFEKSAQNAYALF 538

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
               + SR++  D+   ++ GR+W+G +A   GL+D +GG  +              RK+
Sbjct: 539 RDKAAMSRSMNVDQMETVAQGRVWSGQDAASRGLVDSLGGFSQALAIAKQKANIPHDRKV 598

Query: 250 --KDWNPPKNYWFCDLKNLSISSL-LEDTIPLMKQ--TKVQGLWA 289
              + + P       L  +  S L ++  +  + Q  T + G+ A
Sbjct: 599 QLVEISKPSPTLPEILSGIGSSLLGVDRAVKGVLQDVTSLNGVQA 643



 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 101/285 (35%), Gaps = 17/285 (5%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSA 66
           + + +               V  + +RG+I D             ++ E   + + D   
Sbjct: 104 LAVKLRMLVAPPWKRVRKGSVLNMKLRGEISDQLKTRFSSGLSLPQICENFVKAAYDPRI 163

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
           + + + +          + I R I   K     +     +     Y ++CA   + A  +
Sbjct: 164 SGIYLHIEPLRCGWGKVDEIRRHIVDFKKSGKFVVGYMPVCGEKEYYLACACGELYAPPS 223

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDS 184
           + V   G+  Q  +++  L+K+G+  +  +    K+  +      ++ +  +M+  ++D+
Sbjct: 224 AYVALFGLTVQQTFLRGVLEKVGIEPEIQRIGRYKSAGDQLARKSMSNEVREMLATLLDN 283

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG--V 242
            Y  ++  +S       ++     +  ++  A  K+ G I  +   +EV   L       
Sbjct: 284 IYGNWLDTISSKHGKKKEEIEEFINSGVYQVARLKEEGWITDLLYDDEVMAMLKERVAQK 343

Query: 243 DQSIRKIKDWNP--PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           D+   ++ D++     + W   L+       +      + +T+  
Sbjct: 344 DKKSLRMVDYSKYSRVSKWTLGLQGGGEQIAVIRASGSITRTRSP 388


>gi|307293218|ref|ZP_07573064.1| signal peptide peptidase SppA, 67K type [Sphingobium
           chlorophenolicum L-1]
 gi|306881284|gb|EFN12500.1| signal peptide peptidase SppA, 67K type [Sphingobium
           chlorophenolicum L-1]
          Length = 633

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/272 (26%), Positives = 120/272 (44%), Gaps = 10/272 (3%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPG 77
             +H   N   +  + I G I D +          + + + +   +    AL+V + SPG
Sbjct: 302 MKAHKPANDGEIGVLTIAGDIVDGEAGPGTAAGDTIAKLLRKALAEKDLKALVVRVDSPG 361

Query: 78  GSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GS  A E I  AI + K++  PV+  +  +AAS GY +S  +N+I A   ++ GSIGV  
Sbjct: 362 GSVMASEKIRGAIMEAKSQGLPVVVSMGNVAASGGYWVSTPANMIFAEPDTITGSIGVFG 421

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
             P  +  L K+GV+   VK++P+  +P       P+  ++MQ  V+  Y  FV LV++S
Sbjct: 422 ILPSFEGTLAKIGVTTDGVKTTPLSGQPDVAGGTTPEFDRIMQMGVEDIYGRFVGLVAQS 481

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R     +   ++ GR+W G  A+++GL+D  GG E+       L      +        +
Sbjct: 482 RRKTPQQIDAIAQGRVWDGGTARQIGLVDRFGGLEDAIAEAAKLAKIDPAKAKPYRIAKE 541

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
              F       +    ED          + L 
Sbjct: 542 PDPFTQFVQSIVDREEEDDAGAPDGAMGRDLL 573



 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 74/206 (35%), Gaps = 9/206 (4%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASA 110
           +++  ++    D    A++++L    G        + +A+  V+  K  +     + +  
Sbjct: 84  DIVAALDAAKDDKKVKAVVLNLDGFTGGGQVALGRVGKALDAVRAAKKPVFAYATIYSDD 143

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
            Y ++  +          V   G      Y K  +D+LGV+    +    K+   PF+  
Sbjct: 144 SYQLAAHATESWVNPLGGVAITGRGGSGLYYKGLIDRLGVNTHVYRVGTYKSFVEPFTRT 203

Query: 171 --NPKAVQMMQDVVDSSYHWFVRLVSESR-NIPYDKTLVLSDGRIW-----TGAEAKKVG 222
             +P+A Q  Q + D+ +  + + V+ +R        +    G            A   G
Sbjct: 204 GQSPEAKQANQALADALWEDWRQEVATARPKAKLAAYVNDPAGLAQAAGGNLAKAALGAG 263

Query: 223 LIDVVGGQEEVWQSLYALGVDQSIRK 248
           LID +G +      +  +  +    K
Sbjct: 264 LIDKMGDEAAFGARVAEVAGNAPDDK 289


>gi|317152403|ref|YP_004120451.1| signal peptide peptidase SppA, 36K type [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316942654|gb|ADU61705.1| signal peptide peptidase SppA, 36K type [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 329

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/280 (22%), Positives = 122/280 (43%), Gaps = 19/280 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSPG 77
             D    +A I + G +                QEL+  +     D     +++++ SPG
Sbjct: 44  EGDGDGKLALIHLTGFLAAQPRQGMLRSTPSQVQELVSALALAEADTEVKGVVLAIDSPG 103

Query: 78  GSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           G+  A + ++  I   K R  K V+  + ++AAS GY  +  ++ I+A  T++ GS+GV+
Sbjct: 104 GTTTASDILYHEIADFKQRTGKKVVVAMFDVAASGGYYAALPADWILAHPTTITGSVGVV 163

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
           F  P +    DK+GV ++  KS   K   SPF    P+   + Q ++D     F+ LV++
Sbjct: 164 FMRPKLHGLFDKIGVDVEVSKSGEDKDMGSPFRPTTPEEAALFQAIIDDYAARFLALVAK 223

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
            R +      ++   R++T  +A   GL+D VG  ++ +    AL       ++  +   
Sbjct: 224 HRALTPQNMALVRTARVFTANQALAAGLVDQVGYIQDAFARARALSGLADNARVVTYRRE 283

Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKV----QGLWAVW 291
                     ++ +   + ++  +  + +     G + VW
Sbjct: 284 TYPNDNPYNTMTSADPAKASLLGVDASFIMPPRAGFYYVW 323


>gi|118594938|ref|ZP_01552285.1| Peptidase family U7 [Methylophilales bacterium HTCC2181]
 gi|118440716|gb|EAV47343.1| Peptidase family U7 [Methylophilales bacterium HTCC2181]
          Length = 318

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 65/275 (23%), Positives = 119/275 (43%), Gaps = 16/275 (5%)

Query: 8   IKTRYVMLS-LVTLTVVYFSWSSHVE-DNSPHVARIAIRGQI-----EDSQELIERIERI 60
           I  +++ L  L+ L +++ S             A I +RG+I      +  +    ++ +
Sbjct: 33  IFFKFLTLGYLIALLLIFVSGGDRGAVSTGEFTALINLRGEIGADQPVNGSDFRISLKEV 92

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCA 117
             +    ALI+S++SPGGS      I   IQ+ K +    PV   V ++ AS  Y I+ A
Sbjct: 93  YANPGTKALILSINSPGGSPVQSGMINDEIQRYKKKFPEIPVYAVVEDVCASGAYYIAVA 152

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           ++ I   + S+VGSIGVL      +  +  LG+  + + +   KA   PF  ++PK    
Sbjct: 153 ADKIFVDKASIVGSIGVLIDGFGFEKAIATLGIERRLITAGENKAIMDPFLPIDPKQKLH 212

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           +  ++   +  F+ +V   R         +  G  W+G +A ++GL D +G    V   +
Sbjct: 213 IDAMLAEVHQQFINVVKRGRGDRLANNDDIFSGLFWSGEKAIQLGLADDMGDIYSVANEI 272

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
                     KI D+   +++     K L +   +
Sbjct: 273 IG------YEKIVDFTSYESFADRFAKQLGMGIGI 301


>gi|125583549|gb|EAZ24480.1| hypothetical protein OsJ_08238 [Oryza sativa Japonica Group]
          Length = 684

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 130/285 (45%), Gaps = 19/285 (6%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALI 70
              W+  ++     +A I   G I               +++LIE+I  +   +   A+I
Sbjct: 369 VSKWTLGLQGGGEQIAVIRASGSITRTRSPLSVPSSGIIAEQLIEKIRTVRESEKYKAVI 428

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + + SPGG A A + ++R I+ + + KPV+  + ++AAS GY ++ A+ +IVA + +L G
Sbjct: 429 LRIDSPGGDALASDLMWREIRLLADTKPVVASMSDVAASGGYYMAMAAPVIVAEKLTLTG 488

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP-FSEVNPKAVQMMQDVVDSSYHWF 189
           SIGV+     ++   +++  + + +         +     + P   ++ +    ++Y  F
Sbjct: 489 SIGVVTGKFILQKLYERIDFNKEIISKGRYAELNAADQRPLRPDEAELFEKSAQNAYALF 548

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
               + SR++  D+   ++ GR+W+G +A   GL+D +GG  +              RK+
Sbjct: 549 RDKAAMSRSMNVDQMETVAQGRVWSGQDAASRGLVDSLGGFSQALAIAKQKANIPHDRKV 608

Query: 250 --KDWNPPKNYWFCDLKNLSISSL-LEDTIPLMKQ--TKVQGLWA 289
              + + P       L  +  S L ++  +  + Q  T + G+ A
Sbjct: 609 QLVEISKPSPTLPEILSGIGSSLLGVDRAVKGVLQDVTSLNGVQA 653



 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 101/295 (34%), Gaps = 27/295 (9%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSA 66
           + + +               V  + +RG+I D             ++ E   + + D   
Sbjct: 104 LAVKLRMLVAPPWKRVRKGSVLNMKLRGEISDQLKTRFSSGLSLPQICENFVKAAYDPRI 163

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNR----------KPVITEVHEMAASAGYLISC 116
           + + + +          + I R I   K               +     +     Y ++C
Sbjct: 164 SGIYLHIEPLRCGWGKVDEIRRHIVDFKKSDDEQVLHDFVGKFVVGYMPVCGEKEYYLAC 223

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKA 174
           A   + A  ++ V   G+  Q  +++  L+K+G+  +  +    K+  +      ++ + 
Sbjct: 224 ACGELYAPPSAYVALFGLTVQQTFLRGVLEKVGIEPEIQRIGRYKSAGDQLARKSMSNEV 283

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
            +M+  ++D+ Y  ++  +S       ++     +  ++  A  K+ G I  +   +EV 
Sbjct: 284 REMLATLLDNIYGNWLDTISSKHGKKKEEIEEFINSGVYQVARLKEEGWITDLLYDDEVM 343

Query: 235 QSLYALG--VDQSIRKIKDWNP--PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
             L       D+   ++ D++     + W   L+       +      + +T+  
Sbjct: 344 AMLKERVAQKDKKSLRMVDYSKYSRVSKWTLGLQGGGEQIAVIRASGSITRTRSP 398


>gi|256829567|ref|YP_003158295.1| signal peptide peptidase SppA, 67K type [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578743|gb|ACU89879.1| signal peptide peptidase SppA, 67K type [Desulfomicrobium baculatum
           DSM 4028]
          Length = 611

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 120/274 (43%), Gaps = 12/274 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSL 73
                 S    +   +  I  RG I           S+ + E  +   +D +  A+++ L
Sbjct: 309 YLAMSPSGQTASKEVIGIIRARGAILPGKQPENMTGSESIAELFQMARQDPTVLAVVLRL 368

Query: 74  SSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
            SPGGSA A E I   I + +   KPV+  +  +AAS  Y I+  +N IVAA T+L GSI
Sbjct: 369 DSPGGSAAASEEIHHEIARTQEAGKPVVVSMGSVAASGAYWIAAGANRIVAAPTTLTGSI 428

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           G+   +P  +     LG++   + ++P+    +P   ++ ++ + +  ++   Y  F+  
Sbjct: 429 GIFAAFPTFEDTAMNLGITTDGIGTTPLADLGNPLRPLSAQSERAIGHLLRFGYDLFIDR 488

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIK 250
           V+  R +P       + GR++ G EA    L+D +G  ++  ++  +L      + ++++
Sbjct: 489 VASGRRLPAADVENSAQGRVFLGQEALSRKLVDQLGDLDDALKTAASLAGLTVVNSKELR 548

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
                         + + +   + +  + K   +
Sbjct: 549 RAPSSHEKLLQTFFSTAQALFTQQSPAISKMLNM 582



 Score = 88.1 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/315 (12%), Positives = 97/315 (30%), Gaps = 42/315 (13%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51
           + +      L +V +    F   +        V  +   G + + +              
Sbjct: 22  RVVVANIFFLLVVIILFGVFFTDTEETLRQNSVLVVNPAGALVEQRNAPKPAEALLRKMG 81

Query: 52  ------------ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKP 98
                       ++I+ I + + D +  A+++      G        I +AI   K    
Sbjct: 82  RETAKADETKTQDIIDAIRKAATDSNILAMVIDPRDLQGCDTTKLLDIGKAILDFKETGK 141

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            +     +     YL++  ++ I       V   G      Y K  LDK  ++    +  
Sbjct: 142 PVLAHSMVYTQGQYLLASYADTISVNPLGGVMITGFGMYQTYFKGLLDKTRINFHVFRVG 201

Query: 159 PMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK----TLVLSDGRI 212
             K    PF    ++ +A +  ++ +   +  ++   S++R +           +     
Sbjct: 202 DYKTAVEPFVRESMSEEAKEAGREWLGGLWQAYLDEASKNRGVSPSDITSYVENIDTRLA 261

Query: 213 WTGAEAKKV----GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
             G +A ++     L+D +    +  Q L      +      +     ++      + S 
Sbjct: 262 AVGGDAARLAVTAKLVDEIKTSTQFDQLLAGKTGKK-----VEDLNRVDFQDYLAMSPSG 316

Query: 269 SSLLEDTIPLMKQTK 283
            +  ++ I +++   
Sbjct: 317 QTASKEVIGIIRARG 331


>gi|119493252|ref|ZP_01624092.1| protease IV [Lyngbya sp. PCC 8106]
 gi|119452725|gb|EAW33903.1| protease IV [Lyngbya sp. PCC 8106]
          Length = 607

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 126/252 (50%), Gaps = 9/252 (3%)

Query: 33  DNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           ++   +  I   G I D +          L +++ ++  D    A+++ ++SPGGSA A 
Sbjct: 316 NSKNKIGIIYAEGSIVDGEGVGDQIGGDSLAKKLRKLRMDKEVKAVVLRVNSPGGSATAS 375

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           E I R ++ ++ +KPVI  +   AAS GY IS A++ I A   ++ GSIGV      V+ 
Sbjct: 376 EIIGREVELLQAQKPVIVSMGNFAASGGYWISMAASQIFAESNTITGSIGVFGVLFNVQD 435

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
             ++ GV+   V++       +      P+ +  +Q VVD+ Y  F+  VSESR++P  K
Sbjct: 436 IANENGVTWDVVQTGRYANINTVSRPKTPEELARIQKVVDAIYERFLTKVSESRDLPKSK 495

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ GR+W+G +A+K+GL+D +GG +    +       +   K++++   + +    L
Sbjct: 496 VAEIAQGRVWSGIQAEKIGLVDQIGGIQAAIAAAAEQAKLEDDWKLEEYPEGETFEQQIL 555

Query: 264 KNLSISSLLEDT 275
           +        + +
Sbjct: 556 ETFIGGESTQAS 567



 Score = 82.7 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 94/262 (35%), Gaps = 29/262 (11%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------------------ 51
            L+ L +   +  S  +     V    +   I D+                         
Sbjct: 29  GLIFLVMAAATQDSGPQVKDKSVLVFDLSLNITDADPEYDTSELFQKALAEDSFNQIKLR 88

Query: 52  ELIERIERISRDDSATALIVSLSSPGGS--AYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
            ++E +E  S+DD    L +  +S   S        + +A++K +     I         
Sbjct: 89  TILEGLEEASQDDRIVGLYLKGTSNPTSTGLANSTEVRQALEKFRESGKPIIAYDLDWTE 148

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y ++  +N IV      V   G+  +  ++    +K G+ ++  +    K+   PF  
Sbjct: 149 PEYYLASVANTIVVNPLGSVEMNGLSSEIMFLAGAFEKFGIGVQVTRVGKYKSAVEPFLL 208

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLIDV 226
            +++ +  +  Q ++D  +  ++  VS SR +   +   ++DG  I    EA K  L+D 
Sbjct: 209 KQMSSENREQTQKLLDDIWGKYITTVSPSRQLNASQLQQIADGQGILMAPEAVKSKLVDK 268

Query: 227 VGGQEEVWQSLYALGVDQSIRK 248
           V   +EV   L  L  +     
Sbjct: 269 VAHFDEVIVDLKKLTGEPEDED 290


>gi|237744633|ref|ZP_04575114.1| protease IV [Fusobacterium sp. 7_1]
 gi|229431862|gb|EEO42074.1| protease IV [Fusobacterium sp. 7_1]
          Length = 551

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 112/237 (47%), Gaps = 11/237 (4%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70
                 ++      +   +A I + G+I          +   ++E+++ +    +   L+
Sbjct: 267 FLEYVSAYKRKKNKSKNTIAIINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLV 326

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + ++SPGGSA   E I++ ++K+    P+   + ++ AS GY I+     + A   +L G
Sbjct: 327 LRINSPGGSALESEKIYQKLKKL--EIPIYVSMGDLCASGGYYIATVGKKLFANPVTLTG 384

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+  YP     ++KL V+++             FS+++ ++ + +   ++  Y  F 
Sbjct: 385 SIGVVVLYPEFTETINKLKVNMEGFSKGKGFDIFDIFSKLSEESKEKIIYSMNEVYSEFK 444

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
             V ++RNI  +    ++ GR+W G++AK+ GL+D +G   +   SL      +  +
Sbjct: 445 EHVIQARNISEEDLEKIAGGRVWLGSQAKENGLVDELGSLNDCIDSLAKDLELKDFK 501



 Score = 70.4 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 114/284 (40%), Gaps = 12/284 (4%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
           F+L K K +  + SL  +  V F+ +  VED    ++ I+I   +   + L++ +E +  
Sbjct: 27  FILGKFKNKDKV-SLKGVKTVVFNLNELVEDYM--ISTISINKTL-SHEALLKALENLVN 82

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           D     +I+ +     S    E I    +K+   K +I         +  +   A+ I +
Sbjct: 83  DKKIEKIIIDVDEVDLSRVHIEEIKEIFEKLSVNKEIIAIGTTFDEYSYQVALLANKIYM 142

Query: 123 AA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQ 179
              + S +   G  ++ PY K  L   GV++ ++     K   E    ++++ +  + + 
Sbjct: 143 LNTKQSCLYFRGYEYKEPYFKNILATFGVTVNTLHIGDYKVAGESFSNNKMSEEKKESLI 202

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
           ++ ++ +  F+ LV E R +   K ++  D       +A ++GLID +   EE       
Sbjct: 203 NIKETLFQNFINLVKEKRKVDITKEILSGDLIFANSEKAIQLGLIDGLSTYEE-----IG 257

Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
           +  ++      ++           KN      LE  I   +  +
Sbjct: 258 IDYNEDTVDFLEYVSAYKRKKNKSKNTIAIINLEGEIDTRESKE 301


>gi|289764414|ref|ZP_06523792.1| protease IV [Fusobacterium sp. D11]
 gi|289715969|gb|EFD79981.1| protease IV [Fusobacterium sp. D11]
          Length = 306

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 121/270 (44%), Gaps = 13/270 (4%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70
                 ++      +   +A I + G+I          +   ++E+++ +    +   L+
Sbjct: 22  FLEYVSAYKRKKNKSKNTIAIINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLV 81

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + ++SPGGSA   E I++ ++K+    P+   + ++ AS GY I+     + A   +L G
Sbjct: 82  LRINSPGGSALESEKIYQKLKKL--EIPIYVSMGDLCASGGYYIATVGKKLFANPVTLTG 139

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+  YP     ++KL V+++             FS+++ ++ + +   ++  Y  F 
Sbjct: 140 SIGVVVLYPEFTETINKLKVNMEGFSKGKGFDIFDVFSKLSEESKEKIIYSMNEVYSEFK 199

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
             V ++RNI  +    ++ GR+W G++AK+ GL+D +G   +   SL      +  +   
Sbjct: 200 EHVIQARNISEEDLEKIAGGRVWLGSQAKENGLVDELGSLNDCIDSLVKDLELKDFK--L 257

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            +   +      +  +    +  D I  ++
Sbjct: 258 TYIRGRKSMMEIISAMKPQFIKSDIIEKIE 287


>gi|125540982|gb|EAY87377.1| hypothetical protein OsI_08780 [Oryza sativa Indica Group]
          Length = 684

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 130/285 (45%), Gaps = 19/285 (6%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALI 70
              W+  ++     +A I   G I               +++LIE+I  +   +   A+I
Sbjct: 369 VSKWTLGLQGGGEQIAVIRASGSITRTRSPLSVPSSGIIAEQLIEKIRTVRESEKYKAVI 428

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + + SPGG A A + ++R I+ + + KPV+  + ++AAS GY ++ A+ +IVA + +L G
Sbjct: 429 LRIDSPGGDALASDLMWREIRLLADTKPVVASMSDVAASGGYYMAMAAPVIVAEKLTLTG 488

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP-FSEVNPKAVQMMQDVVDSSYHWF 189
           SIGV+     ++   +++  + + +         +     + P   ++ +    ++Y  F
Sbjct: 489 SIGVVTGKFILQKLYERIDFNKEIISKGRYAELNAADQRPLRPDEAELFEKSAQNAYALF 548

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
               + SR++  D+   ++ GR+W+G +A   GL+D +GG  +              RK+
Sbjct: 549 RDKAAMSRSMNVDQMETVAQGRVWSGQDAASRGLVDSLGGFSQALAIAKQKANIPHDRKV 608

Query: 250 --KDWNPPKNYWFCDLKNLSISSL-LEDTIPLMKQ--TKVQGLWA 289
              + + P       L  +  S L ++  +  + Q  T + G+ A
Sbjct: 609 QLVEISKPSPTLPEILSGIGSSLLGVDRAVKGVLQDVTSLNGVQA 653



 Score = 79.7 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 100/295 (33%), Gaps = 27/295 (9%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSA 66
           + + +               V  + +RG+I D             ++ E   + + D   
Sbjct: 104 LAVKLRMLVAPPWKRVRKGSVLNMKLRGEISDQLKTRFSSGLSLPQICENFVKAAYDPRI 163

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNR----------KPVITEVHEMAASAGYLISC 116
           + + + +          + I R I   K               +     +     Y ++C
Sbjct: 164 SGIYLHIEPLRCGWGKVDEIRRHIVDFKKSDDEQVLHDFVGKFVVGYMPVCGEKEYYLAC 223

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKA 174
           A   + A  ++ V   G+  Q  +++  L+K+G+  +  +    K+  +      ++ + 
Sbjct: 224 ACGELYAPPSAYVALFGLTVQQTFLRGVLEKVGIEPEIQRIGRYKSAGDQLARKSMSNEV 283

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
            +M+  ++D+ Y  ++  +S       ++     +  ++  A  K+ G I  +   +EV 
Sbjct: 284 REMLATLLDNIYGNWLDTISSKHGKKKEEIEEFINSGVYQVARLKEEGWITDLLYDDEVM 343

Query: 235 QSLYALGVDQSIRKIKDWNPPK----NYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
             L      +  + ++  +  K    + W   L+       +      + +T+  
Sbjct: 344 AMLKERVGQKDKKSLRMVDYSKYSRVSKWTLGLQGGGEQIAVIRASGSITRTRSP 398


>gi|293568086|ref|ZP_06679423.1| Putative signal peptide peptidase sppA [Enterococcus faecium E1071]
 gi|291589168|gb|EFF20979.1| Putative signal peptide peptidase sppA [Enterococcus faecium E1071]
          Length = 341

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 123/255 (48%), Gaps = 16/255 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSP 76
              D++  + ++++ G I                +  +E+++ I  D +   + + ++SP
Sbjct: 53  EEGDSTQKIVKLSVDGTIAAGGSSGLFASEGYNHKNFMEQLKAIEEDPTVKGIFLEVNSP 112

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG  Y    I + +  ++     P+   +  MAAS GY IS  ++ I A E ++ GSIGV
Sbjct: 113 GGGVYESAEIAKKLDTIRKEHDIPMYVSMKNMAASGGYYISAQADKIFATEETVTGSIGV 172

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +         L+KLGV   +VKS  +K   S       +   ++Q  +DS+Y  FV +VS
Sbjct: 173 IISGLNYSGLLEKLGVEDTTVKSGALKDMGSGTRPETKEEETVLQAYIDSAYSRFVAIVS 232

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           E RN   ++   ++DGRI+ G +AK+VGL+D +G  E+  +++      +   ++ +++ 
Sbjct: 233 EGRNKSEEEVKKIADGRIYDGVQAKEVGLVDELGFPEDALKAMRKEQQLEDA-ELVEYSS 291

Query: 255 PKNYWFCDLKNLSIS 269
             + +        ++
Sbjct: 292 APSGFASTWLGSKLA 306


>gi|110833924|ref|YP_692783.1| peptidase [Alcanivorax borkumensis SK2]
 gi|110647035|emb|CAL16511.1| peptidase [Alcanivorax borkumensis SK2]
          Length = 326

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 10/228 (4%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISRDDSA 66
           +V L  + + V+     S V     HV  + + G I   QE     ++  + R    ++ 
Sbjct: 47  FVYLFTLLVIVIPGKTGSAVTMAEAHVGIVDVNGVIAPDQEASADLIVTGLTRAFEAENT 106

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCASNIIVA 123
           TA+++ ++SPGGS      ++ AI+++      K +   + ++ AS  Y I+ A++ I A
Sbjct: 107 TAVLLKINSPGGSPVQSNQVYNAIKRLRAEYPEKKLYAAITDVGASGAYFIASAADEIYA 166

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
              S+VGSIGV+     ++   DKLGV  +   +   K    PFS V P   + +Q ++D
Sbjct: 167 DPASIVGSIGVIMAGFGLEQAADKLGVERRVFTAGENKDLMDPFSPVKPAHRKHVQTMLD 226

Query: 184 SSYHWFVRLVSESRNIPYDKT--LVLSDGRIWTGAEAKKVGLIDVVGG 229
             +  F+  V + R           L  G  WTG  A  +GLID +  
Sbjct: 227 DIHQQFIAAVKKGRGNRLKVDGHPELFSGLFWTGERAMDLGLIDGLMS 274


>gi|307566027|ref|ZP_07628485.1| signal peptide peptidase SppA, 67K type [Prevotella amnii CRIS
           21A-A]
 gi|307345215|gb|EFN90594.1| signal peptide peptidase SppA, 67K type [Prevotella amnii CRIS
           21A-A]
          Length = 592

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 130/268 (48%), Gaps = 6/268 (2%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79
           + V Y +        S  +AR    G + D+Q++ + + +I+ DD   A+++ ++S GGS
Sbjct: 306 IAVYYMAGDIVDGTVSNPMAR----GSVIDAQKVCKDLAKIAADDDVKAVVIRVNSGGGS 361

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           AYA E I+  I ++K +KPV+  +  MAAS  Y +S  +N+IVA  T+L GSIG+   +P
Sbjct: 362 AYASEQIWHYIMELKKKKPVVVSMGGMAASGAYYLSAPANLIVADPTTLTGSIGIFGMFP 421

Query: 140 YVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                L +KLGV    V ++   A  +       + ++++   V   Y  F   V+E R 
Sbjct: 422 DFSGLLREKLGVKFDEVSTNKHAAFGTISRPFTIEEMRLLSQYVGRGYKLFCNRVAEGRK 481

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           + + +   ++ G ++TG  AK +GL+D +GG +        L   +     +D+  P ++
Sbjct: 482 LSFQQINKIAQGHVYTGEYAKTIGLVDYLGGLDVAISKAANLAKIRDYY-TQDYPEPLSW 540

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQG 286
                    + S L+D +        Q 
Sbjct: 541 VEQIFDEDIVGSYLDDKVKAQLGDFYQP 568



 Score = 89.7 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 93/262 (35%), Gaps = 26/262 (9%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-------------------- 52
           +   + ++ ++    S         V  I + GQ+ D+Q+                    
Sbjct: 23  IAFFIGSILLMIIGSSHKESVADNSVLTINLTGQMADNQQEDNPLDKFMGNAIKSISLNT 82

Query: 53  LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKN-RKPVITEVHEMAASA 110
            ++ ++    D     + +        S    +   +A+   +      +    +     
Sbjct: 83  FVKGLKIAKEDKKIKGVYLEAGLFQADSYATLQEARKALLDFQKGSGKWVIAYADSYTQQ 142

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169
            Y ++ A+  +      ++   G+  Q  ++K  + K GV +   K    K+    F+E 
Sbjct: 143 SYYLASAATKVYLNPQGMIDWHGLAAQPLFLKDAMAKFGVKMHVAKVGKYKSATEMFTED 202

Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA--EAKKVGLIDV 226
            ++    +  +  +   +   V+ V++SRN+  ++    +D  I   A  + K++ L+D 
Sbjct: 203 KMSEANREQTKAYISGIWGNVVKEVAQSRNLTVEQLNNYADSAITFAAPTDYKRMKLVDG 262

Query: 227 VGGQEEVWQSLYALGVDQSIRK 248
           +   +++ Q +      +   +
Sbjct: 263 LLYSDQIKQLVKKKMGVEDDLQ 284


>gi|205374508|ref|ZP_03227304.1| signal peptide peptidase [Bacillus coahuilensis m4-4]
          Length = 336

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 129/284 (45%), Gaps = 25/284 (8%)

Query: 30  HVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSS 75
                S  +A + + G I+D+              ++ ++++E I  D +   +++ ++S
Sbjct: 54  EKGSASKRIAVLEVNGVIQDTGDVASFFESPTYNHRQFMDQLEVIKEDKTIQGVVLRVNS 113

Query: 76  PGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           PGG       I + + ++  +   PV   +  +AAS GY IS  ++ I A   +L GS+G
Sbjct: 114 PGGGTAESAQIHQKLVELKEEAEIPVYVSMGSIAASGGYYISAPADKIFAMGETLTGSLG 173

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V+ Q        ++ GV + ++KS P K   SP  EV  +   ++Q ++D+SY  FV ++
Sbjct: 174 VIMQSLNYSGLAEEYGVEMVTIKSGPYKDILSPTREVTEEERNILQSMIDNSYEAFVDVI 233

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           +  R++   +   ++DGRI+ G +AK+  LID  G  E+  ++L         +    + 
Sbjct: 234 ATGRDMSEAEVKRIADGRIYDGYQAKENNLIDEFGYYEDALEALKKDHDLNGAQV---FE 290

Query: 254 PPKNYWFCDLKNLSISSLLED------TIPLMKQTKVQGLWAVW 291
                 F  L + S  S+          +  + ++    L  ++
Sbjct: 291 YSTGMGFESLFSYSAQSVFGKDMESRMLMDFLSKSSGPRLMYLY 334


>gi|256026400|ref|ZP_05440234.1| protease IV [Fusobacterium sp. D11]
          Length = 334

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 121/270 (44%), Gaps = 13/270 (4%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70
                 ++      +   +A I + G+I          +   ++E+++ +    +   L+
Sbjct: 50  FLEYVSAYKRKKNKSKNTIAIINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLV 109

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + ++SPGGSA   E I++ ++K+    P+   + ++ AS GY I+     + A   +L G
Sbjct: 110 LRINSPGGSALESEKIYQKLKKL--EIPIYVSMGDLCASGGYYIATVGKKLFANPVTLTG 167

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+  YP     ++KL V+++             FS+++ ++ + +   ++  Y  F 
Sbjct: 168 SIGVVVLYPEFTETINKLKVNMEGFSKGKGFDIFDVFSKLSEESKEKIIYSMNEVYSEFK 227

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
             V ++RNI  +    ++ GR+W G++AK+ GL+D +G   +   SL      +  +   
Sbjct: 228 EHVIQARNISEEDLEKIAGGRVWLGSQAKENGLVDELGSLNDCIDSLVKDLELKDFK--L 285

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            +   +      +  +    +  D I  ++
Sbjct: 286 TYIRGRKSMMEIISAMKPQFIKSDIIEKIE 315


>gi|71892212|ref|YP_277945.1| protease IV [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71796318|gb|AAZ41069.1| protease IV [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 625

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 11/225 (4%)

Query: 32  EDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYA 82
                 +A I I G I D            +  +I     D    A+++ ++SPGGS  A
Sbjct: 329 AKKDNQIAIICINGPIVDGPDIPGSIGGDTIAHKIRSARFDPKIKAIVLRVNSPGGSVNA 388

Query: 83  GEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
            E I   +  V+ + KPV+  +  +AAS GY IS  +N+I+A+ +++ GSIG+       
Sbjct: 389 SELIRLELIAVRDSGKPVVVSMGGIAASGGYWISTPANVIIASNSTITGSIGIFGIINTF 448

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
           +  LD +G+    V +SP+ +  S  + +  + + MMQ  V++SYH+F+  V+ESR    
Sbjct: 449 EKSLDTIGIHSDGVNTSPI-SNISITTPLPTEYINMMQLYVNTSYHYFINTVAESRCKTT 507

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
           +    ++ G +W G +A K GLID +G  ++       L   +  
Sbjct: 508 EDIHKIAQGHVWLGYDAIKNGLIDNIGDLDDAINKAIELAHLKEY 552



 Score = 75.0 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 79/205 (38%), Gaps = 11/205 (5%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASA 110
           ++I  + +   D   T LI+SL +  GS     E I +A+++ K     I  + +    +
Sbjct: 106 DIINILRQAKNDPHITGLILSLKNFCGSNQTSLEYIGKALREFKESGKPIYAISDYYNQS 165

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168
            YL++  +N I       V   G+     Y K  L+ L ++    +    K+   PF   
Sbjct: 166 QYLLASYANKIYLTPHGFVDLRGISTSKLYYKSLLNNLKINTHIFRVGRYKSAVEPFIQD 225

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY--------DKTLVLSDGRIWTGAEAKK 220
           +++         +V+  +  +++++S +RN           +    L   +  T A A K
Sbjct: 226 QMSDHVRHEETKLVNRLWDQYLQIISINRNTTTRSIFPGINNILNELHRMQGDTAAYALK 285

Query: 221 VGLIDVVGGQEEVWQSLYALGVDQS 245
              ID +     +  ++  +     
Sbjct: 286 NKWIDEIASHFVIENTMKEIFGSNK 310


>gi|328949857|ref|YP_004367192.1| signal peptide peptidase SppA, 36K type [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450181|gb|AEB11082.1| signal peptide peptidase SppA, 36K type [Marinithermus
           hydrothermalis DSM 14884]
          Length = 544

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/279 (23%), Positives = 119/279 (42%), Gaps = 21/279 (7%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIE-------------------DSQELIERIERISRDDS 65
           F        ++  VA + + G I                     S+ L+  +     D  
Sbjct: 258 FLPPKLRVFSARRVAVVPLVGAIVTGPSRRVPLPLPILGGDQAGSESLLRALRLAEADPK 317

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
             A+++ + SPGGSA A + I R + ++K  KPV+  +  +AAS GY ++C +  IVAA 
Sbjct: 318 TAAIVLYVDSPGGSALASDLILREVARIKKTKPVVAVLGPVAASGGYYVACQATRIVAAP 377

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
           T+L GSIGV+  +  ++ F  + G++ +++         +       +   ++Q  ++  
Sbjct: 378 TTLTGSIGVVTLFGILEEFNHRYGLNPEAITLGRFAELGTSRRAPTEEERALIQRYIEEV 437

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  FV  V E R +   +   +  GR+W G +A ++GL+D +G  E        L     
Sbjct: 438 YARFVARVVEGRGLEPARVDEIGRGRVWAGQDALELGLVDELGDVERGLALARELADLPP 497

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
                +   PK       +    S+ L+   PL+ +  +
Sbjct: 498 DAPAWNVPMPKPLILP--RPDQPSAFLKVLAPLLAERAL 534



 Score = 80.0 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 82/188 (43%), Gaps = 2/188 (1%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           ++L E+++ +++      +++ +           A+  A+Q++++              +
Sbjct: 60  EQLTEKLQALAQAPWVEGVVLRIEGLRAPYGTVFALREAVQRLRDAGKQTLAYLTRVDFS 119

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK--SVKSSPMKAEPSPFS 168
            Y ++ A+  I   E++    +G+     +VK FLD+ G+  +  +++      +    S
Sbjct: 120 SYYLASAAQTIAVPESAEFSLLGLKLSVTFVKDFLDRYGIRFEKQAIREYKSAGDNLVHS 179

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
            ++    +    +++  +  F + V+E+R +         D  I +  EA+  GL+D V 
Sbjct: 180 RMSEANREQYTTLLERFFEVFAQAVAEARGVDPQTVRDWIDAGITSAKEAQARGLVDRVA 239

Query: 229 GQEEVWQS 236
            ++E+ Q 
Sbjct: 240 YEDELIQK 247


>gi|288553729|ref|YP_003425664.1| proteinase IV [Bacillus pseudofirmus OF4]
 gi|288544889|gb|ADC48772.1| proteinase IV [Bacillus pseudofirmus OF4]
          Length = 331

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/281 (23%), Positives = 126/281 (44%), Gaps = 18/281 (6%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLS 74
              +D    +  + + G I+D+              Q  + +IE  ++D S   +I+ ++
Sbjct: 49  EQGDDFGNSIVVLELNGVIQDTGDAVSIFDAQGYRHQAFLSQIEHAAKDSSVQGVIIRVN 108

Query: 75  SPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           +PGG       I   I +V+    KPV   +  MAAS GY I+  ++ IVA+  ++ GS+
Sbjct: 109 TPGGGVVESAEIHEKIVEVQEEYNKPVYISMGSMAASGGYYIAAPADKIVASPQTITGSL 168

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GV+ +   +    +  G+   ++KS   K   S   E+      ++Q ++D SY  FVR+
Sbjct: 169 GVIMESINIAELAENYGIKFNTIKSGEYKDIMSATREMTEGDRAILQSLIDESYDEFVRI 228

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           +SE RN+   +   L+DGRI+TG +A ++ L+D +G  ++    +             + 
Sbjct: 229 ISEGRNMSESEVRQLADGRIYTGNQALEIDLVDELGSLDDTIAMMREDLGANYSVIKYEA 288

Query: 253 NPPKNYWFCDLKNLSISSL--LEDTIPLMKQTKVQGLWAVW 291
           +      F       +SS   L     L+ + +   L  ++
Sbjct: 289 DTGLYSLFSMTAAKMLSSNNELASIEQLITERRAPTLKYLY 329


>gi|319940786|ref|ZP_08015125.1| hypothetical protein HMPREF9464_00344 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805668|gb|EFW02449.1| hypothetical protein HMPREF9464_00344 [Sutterella wadsworthensis
           3_1_45B]
          Length = 602

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/265 (29%), Positives = 123/265 (46%), Gaps = 9/265 (3%)

Query: 18  VTLTVVYFSWSSHVEDNSPH-VARIAIRGQI-------EDSQELIERIERISRDDSATAL 69
           V         +       P  VA +   G I        D++EL++RIER +   S  AL
Sbjct: 297 VNFGAYLAETARSRSAAQPGAVAVVLAEGAISSTGATGIDAEELVQRIERAASAPSTKAL 356

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSL 128
           ++ +SSPGG A A EAI   +  V+ +  PVI  +   AAS GY IS A++ IVA   +L
Sbjct: 357 VLRISSPGGDALAAEAIREKLAAVRTKGLPVIVSMGNAAASGGYWISLAADRIVADPLTL 416

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIGV    P     L+KL + I   ++S      SP  + N     +++  V  +Y  
Sbjct: 417 TGSIGVFSIVPDAAAALEKLELGIGGFRTSDFADFGSPLHKPNAAEAALLRAGVMRTYAR 476

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           F  L ++SR    +    L+ GRIW G +A + GL+D +G   +  +    +   ++   
Sbjct: 477 FKDLTAQSRKKTPEAVEALAQGRIWMGTQAAQNGLVDKLGDLNDAVKLARQVAGLKTNEP 536

Query: 249 IKDWNPPKNYWFCDLKNLSISSLLE 273
           I+ ++   +     L  L   ++L+
Sbjct: 537 IRIYDVEADAMTSMLSGLMGEAMLK 561



 Score = 65.4 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 41/327 (12%), Positives = 95/327 (29%), Gaps = 41/327 (12%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP-HVARIAIRGQIEDSQ-------- 51
           ++F  + +     +  LV   +++     +     P  +  + + G + +S         
Sbjct: 11  LDFCRRLVLNLIFLGVLVAAALIWLFARPNTPAVEPGTLLVLDLDGAVVESDPLRSISAD 70

Query: 52  ---------------ELIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVK- 94
                          ++ E +     D+    +I+ +         +   I  AI+  K 
Sbjct: 71  LKSLMKSRGASTRLIDVTEALRFAGSDERIAGVIIKVDGLTKLGLASARTIGSAIEDYKT 130

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
                +         A Y  +  ++++       V   G+     Y   FL+KLG+ +  
Sbjct: 131 ASGKPVFSWASGYTQAQYAAAAHADVVALHPMGSVMVKGLSGTTLYWGGFLEKLGIGVSV 190

Query: 155 VKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
            K+   K+ P  +         +   +  +  ++  F   + ++R +          G  
Sbjct: 191 FKAGAFKSAPEAYSLRAPTTDNLIAQEGYLSEAWKVFASDLEDARGLIPGSVDTYLKGLP 250

Query: 213 W-------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK------DWNPPKNYW 259
                       AK  GLI  +  +E   ++L       +++ +K               
Sbjct: 251 ERLNAGESPAEAAKAAGLITDLMAREAFDETLAKQFGGGNLKNVKTVNFGAYLAETARSR 310

Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQG 286
                      L E  I     T +  
Sbjct: 311 SAAQPGAVAVVLAEGAISSTGATGIDA 337


>gi|183220418|ref|YP_001838414.1| signal peptide peptidase SppA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910532|ref|YP_001962087.1| periplasmic serine protease [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775208|gb|ABZ93509.1| Periplasmic serine protease (ClpP class) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778840|gb|ABZ97138.1| Signal peptide peptidase SppA, S49 family [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 332

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/286 (25%), Positives = 128/286 (44%), Gaps = 26/286 (9%)

Query: 31  VEDNSPHVARIAIRGQIED----------SQELI----ERIERISRDDSATALIVSLSSP 76
              +   +  I+I G I D          S  ++    E ++R  RD     +I+ ++SP
Sbjct: 46  AGKDQEKIVIISIEGMISDEGKEAFFGPSSDSMVVRVKESLKRAERDPDVKGVILKINSP 105

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG--YLISCASNIIVAAETSLVGSIGV 134
           GG+  A + I++ I+K K RK +      M  +A   Y I+ A++ I A  T++ GS+GV
Sbjct: 106 GGTVTASDIIYQEIKKFKERKGIPVFAGFMDTAASGAYYIAMATDSIGAHPTTVTGSVGV 165

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +     VK  LDK+G+  +S  S P KA  SP +E+  +  +++Q ++DS Y  F  +V 
Sbjct: 166 IMSGINVKEGLDKIGIKDQSFTSGPNKALGSPTTEMTAEQRKILQSIIDSLYSRFFEVVK 225

Query: 195 ESR-NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA----LGVDQSIRKI 249
           + R  +   +   + DGRI+T  +A+K G+ID +G  +     L       G  Q   +I
Sbjct: 226 KGRPKVSEARLKEICDGRIFTAEQAQKEGMIDFIGYFDNFVIELMKHPKYEGNPQGSPRI 285

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG----LWAVW 291
             +   K       +   +      +  +  +    G       +W
Sbjct: 286 VTYQRGKVPVENIYQATDVKGN-PISFGIADKLLGTGTNAKFLYLW 330


>gi|310821606|ref|YP_003953964.1| Signal peptide peptidase SppA [Stigmatella aurantiaca DW4/3-1]
 gi|309394678|gb|ADO72137.1| Signal peptide peptidase SppA [Stigmatella aurantiaca DW4/3-1]
          Length = 578

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 14/226 (6%)

Query: 36  PHVARIAIRGQIE--------------DSQELIERIERISRDDSATALIVSLSSPGGSAY 81
           P +  I++ G I                S  +++ +    RD  A A+++ ++SPGGSA 
Sbjct: 303 PKLGLISLSGMIVPGRGSSGPIGPKTAGSDAVVKAVRAAGRDKRAKAVVLYINSPGGSAL 362

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
           A E I  AIQ+V  +KPVI  V ++AAS GY+ +  +  I ++  ++VGSIGV       
Sbjct: 363 ASELILEAIQRVARKKPVIAYVDQVAASGGYMAALGAQEIWSSPHAVVGSIGVFAGKFEA 422

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              +  LG+    +         S      P     ++  V+ +Y  F+  V+++R    
Sbjct: 423 SGLMAHLGIHRTLLTRGENAGIFSVSRGFTPHERASLEAEVEETYQAFLAHVAKARRRTT 482

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           ++     +GR+++G      GL+D VG  EE  +        ++ R
Sbjct: 483 EEIHARGEGRVYSGTRGLAAGLVDRVGSFEEACRYALERAGVKTER 528



 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 74/194 (38%), Gaps = 2/194 (1%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            +   +   E +  +++D     +++ L     S+   + + + +   ++    +     
Sbjct: 67  TVSSLESFREALGLLAKDPRVQGILLELEGLAVSSAKKDELVKQLMAFRSAGKRVVGWAV 126

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP- 164
              + G+ + CA++ ++ A    V  +G   +   +   L ++G+    V+    K  P 
Sbjct: 127 SVDNLGFQVLCAADEVLLAPAGRVDLVGYAAEATALGEGLARVGIQAHFVRRGAYKTAPE 186

Query: 165 -SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
                 V+    Q ++  +D  Y   V  ++  R    ++   L D   ++   A   GL
Sbjct: 187 LFTHERVSDIQQQTLEAFLDERYAELVNAIAGGRKRSPEEARALIDAGPYSAQRAVAAGL 246

Query: 224 IDVVGGQEEVWQSL 237
           +D +  + E+   L
Sbjct: 247 VDALCSEAELPARL 260


>gi|254432478|ref|ZP_05046181.1| signal peptide peptidase SppA, 36K type [Cyanobium sp. PCC 7001]
 gi|197626931|gb|EDY39490.1| signal peptide peptidase SppA, 36K type [Cyanobium sp. PCC 7001]
          Length = 270

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 126/259 (48%), Gaps = 6/259 (2%)

Query: 39  ARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           ARIAI G I       +++ + ++ + +   AL++ + SPGG+    + I  A+ +++ +
Sbjct: 14  ARIAIEGPIGGGTRTRVLKALRQVEQRE-CPALLLRIDSPGGTVGDSQEIHAALMRLRQK 72

Query: 97  K-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
              V+     ++AS G  I  A+  IVA   S+ GSIGV+ +   +   L+++GVS ++V
Sbjct: 73  GCRVVASFGNISASGGVYIGVAAEKIVANPGSITGSIGVILRGNNLSKLLERIGVSFETV 132

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215
           KS   K   SP   +      ++Q ++DSSY  FV  V+E R +  +     +DGR+++G
Sbjct: 133 KSGLYKDILSPDRALTEAERGLLQSLIDSSYGQFVAAVAEGRGLEEEAVRSFADGRVFSG 192

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSISSLLED 274
           A+A ++GL+D +G +E   +    L        +   +  P   +   +   S    +  
Sbjct: 193 AQALELGLVDSLGDEEAARRLAAELAGLDVEKTRPITFGAPPRRFAGLIPGRSQLRAVLQ 252

Query: 275 TIPLMKQTKVQGLWAVWNP 293
              L      Q LW ++ P
Sbjct: 253 LFSLELGWGGQPLW-LYRP 270


>gi|256827350|ref|YP_003151309.1| signal peptide peptidase SppA, 36K type [Cryptobacterium curtum DSM
           15641]
 gi|256583493|gb|ACU94627.1| signal peptide peptidase SppA, 36K type [Cryptobacterium curtum DSM
           15641]
          Length = 376

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 114/268 (42%), Gaps = 19/268 (7%)

Query: 6   KKIKTRYVMLSLVTLT-------------VVYFSWSSHVEDNSPHVARIAIRGQIE---- 48
           KK   R + LS+V L              ++  +           VA I + G I     
Sbjct: 68  KKHTGRIIALSIVALLALTVFLMGSCVNTLIGAAREGAEHAQPNSVAVITMSGTIGYNGT 127

Query: 49  --DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
               + L E ++    D +  A+++ ++S GG+A AGE +   ++  K  KP++     +
Sbjct: 128 SCSPEGLKELLDEAQADPNIKAVVLRVNSGGGTATAGEEMASYVRDFKASKPIVVSSAAI 187

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
             SA Y IS  ++ I  A+++ +GSIG + Q       +  LGV+I ++ S+  K     
Sbjct: 188 NCSAAYEISSQADRIFVAKSTEIGSIGTVMQSIDYSGLMKLLGVNIDNIASAESKDSSYG 247

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
              +  +     QD+VD     F   V++ R++  ++   L+ G  +TG  A   GL D 
Sbjct: 248 SRPLTDEERAYYQDLVDQINAVFTDNVAQGRHLSAEEVSQLATGLPFTGVTAVNNGLADE 307

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           +G  E+   +  +L    S  K     P
Sbjct: 308 IGTLEDALDAAASLAGLDSYSKTTLELP 335


>gi|307110504|gb|EFN58740.1| hypothetical protein CHLNCDRAFT_34059 [Chlorella variabilis]
          Length = 610

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 5/217 (2%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI-QKVKNRKPVITEVHEMAASAG 111
           +I+ +    +D +  A ++ + SPGGSA A EAI R +   V   KPV+  +  +AAS G
Sbjct: 323 VIKALRAARQDPAVKACVLRVDSPGGSAAASEAIHREVSLVVGAGKPVVVSMGNVAASGG 382

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ IVA   +L GSIGVL         L + GVS++ V      A  SP +   
Sbjct: 383 YYIATAASKIVAQPGTLTGSIGVLAGKLVCDAALREYGVSVEVVTVGRSAAAMSPLTPFT 442

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
               + +++ +D++Y  F + V+E R +  +    L+ GR+WTG +A + GL+D +GG +
Sbjct: 443 RHQRRRVEEFMDATYALFKQRVAEGRGLKPEAVAKLAKGRVWTGEQAVEAGLVDQLGGLQ 502

Query: 232 EVWQSLYALGVDQSIRKIKD----WNPPKNYWFCDLK 264
              +               +    +   K+     LK
Sbjct: 503 AAVELAKREAGLPLEEGAVELRQAYPEKKSRLAAALK 539



 Score = 41.1 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 73/248 (29%), Gaps = 13/248 (5%)

Query: 56  RIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNR---------KPVITEVHE 105
            +     D     L+  L    G      + +  A+   +                    
Sbjct: 74  ALRAAGGDPRVKGLLALLGGQTGMGLAQVQELRDAVADFRQAAAGRAPTVAYADAFGEGG 133

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
              +A + ++ A +++      LV   G+    P+ +  LD+  +          K+  +
Sbjct: 134 AGGTAAFYLASAFDVVAVQPGGLVSVTGLAAATPFARGLLDRWRIVPVFFAREEYKSAAN 193

Query: 166 P--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
              +        + + D + S     VR ++  R +  ++     DG     AEA  + L
Sbjct: 194 FLRYRGSTRAEREALGDRLASLGAQVVRGIAAGRGLSEEQVRRAIDGAPHLAAEAAALRL 253

Query: 224 IDVVGGQEEVWQSLYAL-GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282
           ID    +++  + +  L       R   D           L     +     T P +   
Sbjct: 254 IDAPLHRDQARKLVSRLREGMAPARPPSDSIAAARAALTALATGQPAEAPSRTSPPLGGA 313

Query: 283 KVQGLWAV 290
               + ++
Sbjct: 314 SPDAIASL 321


>gi|313157546|gb|EFR56964.1| signal peptide peptidase SppA, 67K type [Alistipes sp. HGB5]
          Length = 619

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/263 (25%), Positives = 117/263 (44%), Gaps = 10/263 (3%)

Query: 17  LVTLTVVYFSWSSHVED-NSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSA 66
            +TL        + +++ ++  VA +   G I D +          L   +  +  D+  
Sbjct: 317 FITLGEYASQVGADLKNISADQVAVVYADGAIVDGEGFGKEIYGNTLAATLAGVRDDEKV 376

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
            A+++ ++SPGGSA A + I+R ++ +K  KPV+  +   AAS GY ISC +++IVA + 
Sbjct: 377 KAVVLRVNSPGGSALASDVIWREMELLKAEKPVVVSMGSYAASGGYYISCPADVIVADKL 436

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           +L GSIGV   Y                   S   A     S +       +   VD  Y
Sbjct: 437 TLTGSIGVFGMYLNTIDAFKNKLGITFDAVKSNTSAGMGATSPLTAAERASIMRGVDKVY 496

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
             F   V+E RN+P +K L ++ GR+W+G +A  +GLID  GG +               
Sbjct: 497 TTFTTHVAEGRNLPVEKVLDIAGGRVWSGEDALGIGLIDTYGGLKTAIAIAVDKAGLGDS 556

Query: 247 RKIKDWNPPKNYWFCDLKNLSIS 269
            ++ +       +   + +L++S
Sbjct: 557 YRVTEVIEEPTGFAAFIASLNVS 579



 Score = 97.0 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 108/324 (33%), Gaps = 38/324 (11%)

Query: 1   MEFVLKKIKT--RYVMLSLVTLTVVYFSWSSHVEDNSPHVAR-------IAIRGQIEDS- 50
           M F+   +     +V+ S +   +  F            VA        I     + D+ 
Sbjct: 28  MNFIKTFLAAILAFVVGSFLVFFLWIFILLGIAGSMEKTVAVHAESILKIDFSDVLTDAP 87

Query: 51  ----------------QEL-----IERIERISRDDSATALIVSLSSPGG--SAYAGEAIF 87
                           ++L     +  +E    D     + + ++  GG   A   E + 
Sbjct: 88  SSDPFAGIDFATLRSTRQLPLMKALRALEAAKDDSRIKGIYLRMNGNGGVMGAALLEELR 147

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            A+   K     +    E  +   Y ++ A++ I       +   G+ F   + K  LDK
Sbjct: 148 EAVVDFKQSGKFVVAYDETYSQGKYYLASAADKIYMQPEGAMDWSGLAFNLMFYKGLLDK 207

Query: 148 LGVSIKSVK----SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           L +  +  +          EP    +++    + MQ +V+S ++     V+E+R I   +
Sbjct: 208 LDIKAEVFRPTACKYKSAVEPYILPKMSDANREQMQALVNSMWNTIAGSVAEARGIDLKE 267

Query: 204 TLVLSDG-RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
              ++D   +    +A + G +D +  ++++      LGV        ++     Y    
Sbjct: 268 LNRITDKLEVSLPEDALEHGFVDSLIYEDQMKDIFAELGVASDSDGEYNFITLGEYASQV 327

Query: 263 LKNLSISSLLEDTIPLMKQTKVQG 286
             +L   S  +  +       V G
Sbjct: 328 GADLKNISADQVAVVYADGAIVDG 351


>gi|223041851|ref|ZP_03612039.1| protease 4 [Actinobacillus minor 202]
 gi|223017344|gb|EEF15767.1| protease 4 [Actinobacillus minor 202]
          Length = 622

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/271 (25%), Positives = 127/271 (46%), Gaps = 15/271 (5%)

Query: 33  DNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
             +  +A I I G+I           +  LI +++R+ +D S   L++ ++SPGGSA A 
Sbjct: 323 KAANKIAVINIEGEITMGESLEDTAGTDTLIRQLQRVRQDKSVQGLVLRINSPGGSALAS 382

Query: 84  EAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + ++ ++    PV++ +  MAAS GY I+  S+ IVA   +L GSIG+       +
Sbjct: 383 ELIRQEVEAIQQAGIPVVSSMGGMAASGGYWIAATSDAIVADPNTLTGSIGIFGVLFNFE 442

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                LGV    + +SP+         ++ +  +++Q  V+  Y  F+ LVS  R +   
Sbjct: 443 KTAQNLGVREDGISTSPLAEISGL-KPLSSQQSELIQMSVEQGYREFLDLVSRGRKMDLA 501

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL----GVDQSIRKIKDWNPPKNY 258
           K   ++ G++W G +A+ +GL+D +G  ++    L  L      +Q+  +++ + P    
Sbjct: 502 KVDQIAQGQVWLGQKAQSLGLVDQLGNFDDTLALLGNLINRKLKEQNKPEVETFTPQWFT 561

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
              D     IS  L     L   + +    A
Sbjct: 562 EQDDSLFGEISRSLNAKAKLNLASWLNLPLA 592


>gi|323488441|ref|ZP_08093688.1| signal peptide peptidase SppA, 36K type [Planococcus donghaensis
           MPA1U2]
 gi|323397948|gb|EGA90747.1| signal peptide peptidase SppA, 36K type [Planococcus donghaensis
           MPA1U2]
          Length = 337

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/266 (24%), Positives = 129/266 (48%), Gaps = 19/266 (7%)

Query: 35  SPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSPGGSA 80
           +  VA + + G I+D+ +               +E++E I  D S  A++++++SPGG  
Sbjct: 59  NNRVAVLNVDGVIQDTGDAASFFGTTGYNHSFFMEQLENIKEDASVKAVVLAVNSPGGGV 118

Query: 81  YAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
                I+  I +++    KP    +  +AAS GY I+  +  I   E +L GSIGV+ Q 
Sbjct: 119 VESAEIYDKITEIQEETGKPFYVSMGAIAASGGYYIAAPAEKIFVNEETLTGSIGVIMQS 178

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                  ++ GV   ++KS P K   SP  ++      ++Q+++D SY  FV ++ E R+
Sbjct: 179 VNYGELAERYGVDFVTIKSGPYKDIMSPTRDMTEDERALLQEMLDDSYESFVDVIEEGRS 238

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           +  ++   ++DGRI  G +A +V L D  G +E+V + +     D  +   + +    + 
Sbjct: 239 MTEEEVKAVADGRIMNGRQAVEVNLADDFGFEEDVIEQIKT---DFDLGNAEVFQYGNDQ 295

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKV 284
            +  L ++ ++S   + +     +K+
Sbjct: 296 GWGSLLSMKVNSFFGNDLETQMISKL 321


>gi|161831390|ref|YP_001595988.1| signal peptide peptidase SppA, 36K type [Coxiella burnetii RSA 331]
 gi|161763257|gb|ABX78899.1| signal peptide peptidase SppA, 36K type [Coxiella burnetii RSA 331]
          Length = 313

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/293 (20%), Positives = 119/293 (40%), Gaps = 18/293 (6%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWS-SHVEDNSPHVARIAIRGQIEDSQEL-----IERIE 58
           ++     +++L    L     S        +  +V+ + + G I  +        +  + 
Sbjct: 27  VRFAGWMFILLLFAILIFAPSSSELEARRSDGAYVSLVRMNGTIMSNTTFSALRVVPELR 86

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISC 116
           +   D ++  +++ ++SPGGS      I   I ++K +  K V+    +  AS  YL+S 
Sbjct: 87  KAFADKNSKGVVLLINSPGGSPVQASIIRDKIIELKKQYHKKVVVVGEDELASGAYLVST 146

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
            ++ I     +L GSIGV+         L K+GV+ +   +   K    PF  V P+ V+
Sbjct: 147 GADKIYVNNDTLTGSIGVIMGGFGFVDTLKKVGVTRRLFVAGDHKDRLDPFQPVKPEDVE 206

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
            +  V+   +  F+  V + R          +  G  WTG EA ++G++D       V +
Sbjct: 207 KINKVLAQVHQNFIDQVIQGRGNRLHGDRQEIFSGDFWTGKEAAQLGVVDGTANLWTVLE 266

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS---LLEDTIPLMKQTKVQ 285
                  +  ++  KD+    ++      N +      L  +T PL +Q +V 
Sbjct: 267 R------EFGVKDYKDYTTRVSFLQALFHNTATELYFHLTNETSPLREQMQVD 313


>gi|291288840|ref|YP_003505656.1| signal peptide peptidase SppA, 36K type [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290886000|gb|ADD69700.1| signal peptide peptidase SppA, 36K type [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 288

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 137/268 (51%), Gaps = 10/268 (3%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           S        S  +A + + G I D+++L ++++++  ++    +I+ ++SPGG     + 
Sbjct: 29  SGEGEDVIMSNSIAVLRLEGVIIDTKDLDKKLKKLDANEKVKGIILEINSPGGVIAPTQV 88

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I+  I K+  +KPV   +  +AAS GY I+ A++ + A E++  GSIGV+ QY  V+  +
Sbjct: 89  IYNRIMKM--KKPVYAVMESVAASGGYYIAVAADEVYALESTTTGSIGVIMQYSNVEELM 146

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+G+     KS  +K  PSP  +++    + MQ ++   Y  F+R V + R+I  DK  
Sbjct: 147 SKIGIKSVVFKSGKLKDVPSPTRDLSYSEKEYMQAMISEFYEQFLRDVLKRRSISEDKLR 206

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L+DGR+++G +A ++ LID +G +EE    +      Q +   + ++  ++        
Sbjct: 207 DLADGRVFSGRQAVELKLIDKIGTREEAVVDMKNELGIQDLEVKELYDKDESLLSQLFTK 266

Query: 266 LSISSLLEDTIPLMKQTKVQGLWAVWNP 293
              + L  + IP        G + ++ P
Sbjct: 267 --AAVLRSELIP------NGGFYYIYKP 286


>gi|56552823|ref|YP_163662.1| signal peptide peptidase SppA, 67K type [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56544397|gb|AAV90551.1| signal peptide peptidase SppA, 67K type [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 637

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 74/272 (27%), Positives = 128/272 (47%), Gaps = 11/272 (4%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSA 66
           S   +++  F  ++        +  + + G+I D +          +   +         
Sbjct: 297 SFKAVSLASFIGANPPSSAGSAIGVVTVSGEIVDDETRSGQVSGSTISSLLLDTLAKGDI 356

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAE 125
            AL+V + SPGGS  A E +  AI   K +  PVI  +  +AAS GY IS  ++ I A  
Sbjct: 357 KALVVRVDSPGGSVSAAEQMRSAILAAKAKGLPVIVSMGSVAASGGYWISTPADKIFADP 416

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
           +++ GSIGV    P  +  L K+G+S   VK++P+  +P  F    P+  Q+MQ  VD+ 
Sbjct: 417 STITGSIGVFSLIPTFQQTLHKIGLSADGVKTTPLSGQPDVFRGTTPEFDQLMQFGVDTV 476

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  F  +V+ SR++P +K   +++GR+W+G +AKK+GL+D  G  ++             
Sbjct: 477 YDRFTSIVASSRHLPLEKVREIAEGRVWSGVDAKKIGLVDQYGFLQDAVTEAAKRAHLDP 536

Query: 246 I-RKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
               ++  +   ++    LKNL      +  I
Sbjct: 537 SHTHMQFIDEEPSFVEMILKNLFQHQASDAKI 568



 Score = 70.0 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 95/282 (33%), Gaps = 39/282 (13%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSH----------VEDNSPHVARIAIRG--------- 45
           +K +    +++       V    ++               +     I   G         
Sbjct: 14  IKDVLALILLVLFFGAIFVGLCLTTKNGAISSRNLGAASAADGALLIDFSGNLVEKTEGT 73

Query: 46  ----QIEDS--------QELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQK 92
                I+D+        +E++  +E+ +R+    A+++      GG   A  A+  A+ K
Sbjct: 74  SFLDLIQDNNNQNEILLREVVYGLEQAARNPKIKAVVLDLSDFSGGGRAAISAVDNALDK 133

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           V+     +         A Y I+     I       V  +GV     Y K  LDKLGV  
Sbjct: 134 VRAAGKPVLSFAGFYNDARYRIAAHGTEIWLPNLGEVALLGVGGNQLYYKGLLDKLGVET 193

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
           K  +    K+   PF  +E +P A    Q + +S +   ++ ++ +R   +     L+  
Sbjct: 194 KIYRVGRFKSFVEPFTRTEQSPDAKAANQALANSLWQTTLQDIAHARPKAHVAEWALNPT 253

Query: 211 RIW-----TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
                       A+  G+ID +G   +    + +L       
Sbjct: 254 SFLKSGHSFAELAQSAGMIDHIGNAIDFGNRVASLVGKDKQP 295


>gi|327439223|dbj|BAK15588.1| periplasmic serine protease [Solibacillus silvestris StLB046]
          Length = 336

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 65/304 (21%), Positives = 131/304 (43%), Gaps = 37/304 (12%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN---------------------SPHVARIA 42
           V+  I    ++   + +  +   + +    +                     +  +A + 
Sbjct: 6   VVALIIAAVLLFFSIGINTIISIFKTDFFTSIDNLMGTESLTYESVVETGDLTNRIAHLT 65

Query: 43  IRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
           + G I+D  E              +E+++ +  DD+   +++S+++PGG     E I++ 
Sbjct: 66  VDGVIQDVGEPSIWETVDYNHQLFMEQLDAVLEDDTIKGVVLSVNTPGGGVIESEEIYQK 125

Query: 90  IQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
           + K+K  K +     +  MAAS GY IS  ++ I A   ++ GSIGV+ Q        + 
Sbjct: 126 LLKIKEEKQIPIYVSMGSMAASGGYYISAPADKIFAQRETITGSIGVIMQSINYGKLAEN 185

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
            GV  +++KS   K           + + M+Q+++D SY  FV ++   RN+   +   +
Sbjct: 186 FGVEFETIKSGEHKDMFGGVRPSTKEELAMLQEMIDESYEHFVDIIEAGRNMSEAQVKKV 245

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           +DGR+  G +A + GL+D +G +E    +L A    +   ++ ++    + W   L    
Sbjct: 246 ADGRVLGGTQALRAGLVDEIGNEEATVNALRADFGLEDA-ELFEYTMDTSSWGSLLGVKL 304

Query: 268 ISSL 271
            S L
Sbjct: 305 GSML 308


>gi|291514799|emb|CBK64009.1| signal peptide peptidase SppA, 67K type [Alistipes shahii WAL 8301]
          Length = 588

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 74/263 (28%), Positives = 123/263 (46%), Gaps = 10/263 (3%)

Query: 17  LVTLTVVYFSWSSHVED-NSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSA 66
            VTL        + +++ ++  VA +   GQI D +          L  +I  +  ++  
Sbjct: 286 FVTLGDYAAQVGADLKNISADQVAVVYADGQIVDGEGYGKEIYGNTLAAKIAGVRDNEKV 345

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
            A+++ ++SPGGSA A + I+R I+ ++  KPVI  +   AAS GY ISC ++ IVA + 
Sbjct: 346 KAVVLRVNSPGGSALASDVIWREIELLRAEKPVIVSMGSYAASGGYYISCPADAIVADKM 405

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           +L GSIGV   +   +  L            S   A+ +  S + P    M+   VD  Y
Sbjct: 406 TLTGSIGVFGMFLDTRDALKNKLGITVDGVKSNASADFAATSPLTPLQRAMIMRGVDRVY 465

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
             F   V+E RN+P  K L ++ GR+W G +A +VGLID  GG +               
Sbjct: 466 TTFTNHVAEGRNLPIGKVLDIAGGRVWLGKDALEVGLIDTYGGLKTAIALAVDKAELGDG 525

Query: 247 RKIKDWNPPKNYWFCDLKNLSIS 269
            ++ +       +   + +L++S
Sbjct: 526 YRVVEVKEEPTGFAAIIASLNVS 548



 Score = 96.6 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 101/287 (35%), Gaps = 38/287 (13%)

Query: 1   MEFVLKKI---------KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS- 50
           M F+   +               L +  L  +  S    V  +   + +I     + D+ 
Sbjct: 1   MNFIKTFLAGLLAVVVGTFLVFFLWIFILLGIAGSMEKSVAVHPESILKIDFSEVLTDAP 60

Query: 51  ----------------QEL-----IERIERISRDDSATALIVSLSSPGG--SAYAGEAIF 87
                           ++L     +  +E    DD    + + ++  GG   +   E + 
Sbjct: 61  SSDPLAGLDLMTLQTQRQLPLLKALRALEAARDDDRIKGIYLRMNGTGGVTGSAILEELR 120

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            A+ + K     I   +E  +  GY ++  ++ I      ++   G+     + K  LDK
Sbjct: 121 EALVEFKQSGKFIVAYNETYSQGGYYLASVADKIYMQPEGMMEWAGLSMNLMFYKGLLDK 180

Query: 148 LGVSIKSVK----SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           L +  +  +          EP  + +++    + MQ +V S +      V+E+R I    
Sbjct: 181 LDLKAEVFRPTACKYKSAVEPYIYDKMSDANREQMQQLVSSMWGVIAESVAEARGIELKT 240

Query: 204 TLVLSDG-RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
              ++D   +    EA + GL+D +  ++++      LGV      +
Sbjct: 241 LNEMADRLEVALPDEALEKGLVDSLIYEDQMEDVFAELGVSDDYDFV 287


>gi|254303887|ref|ZP_04971245.1| S49 family protease IV [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324079|gb|EDK89329.1| S49 family protease IV [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 551

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 112/239 (46%), Gaps = 11/239 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATA 68
           +       ++      +   +A I + G+I          +   +IE+++ +    +   
Sbjct: 265 IDFGEYISAYKRKKNKSKNTIAIINLEGEIDTRESKEANINYDNVIEKLDELEDIKNLKG 324

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           L++ ++SPGGSA   E I++ ++K+    P+   + ++ AS GY I+     + A   +L
Sbjct: 325 LVLRINSPGGSALESEKIYQKLKKL--DIPIYISMGDLCASGGYYIATVGKKLFANSVTL 382

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIGV+  YP     ++KL V+++              S+++ ++ + +   ++  Y+ 
Sbjct: 383 TGSIGVVVLYPEFTEAINKLKVNMEGFSKGKGFDIFDVTSKLSKESKEKIIYSMNEVYNE 442

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           F   V ++RNI  +    ++ GR+W G++AK  GL+D +G   +   SL      +  +
Sbjct: 443 FKEHVMKARNISEEDLEKIAGGRVWLGSQAKANGLVDELGSLNDCIDSLVKDLELKDFK 501



 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 88/226 (38%), Gaps = 8/226 (3%)

Query: 38  VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
           ++ ++I   +   + +++ +E +  D     +I+ +     S    E I    +K+   K
Sbjct: 59  ISTVSINKTL-SHEAVLKALENLVNDKKIEKIIIDVDEVDLSRVHIEEIKEIFEKLSVNK 117

Query: 98  PVITEVHEMAASAGYLISCASNIIVAA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
            +I         +  +   A+ I +   + S +   G  ++ PY K  L  LGV++ ++ 
Sbjct: 118 EIIAIGTTFDEYSYQVALLANKIYMLNTKQSSLYFRGYEYKEPYFKNILTNLGVTVNTLH 177

Query: 157 SSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
               K   E     +++ +  + + ++ ++ +  F+ LV E R    D T  +  G +  
Sbjct: 178 IGDYKVAGESFSNDKMSEEKKESLINIKETLFQNFINLVKEKRK--VDITNEILSGDLIF 235

Query: 215 G--AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
               +A ++GLID +   EE+        +D               
Sbjct: 236 ANSEKAIQLGLIDGLSTYEEIGIDYNEDTIDFGEYISAYKRKKNKS 281


>gi|313886500|ref|ZP_07820216.1| signal peptide peptidase SppA, 67K type [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924046|gb|EFR34839.1| signal peptide peptidase SppA, 67K type [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 594

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 14/243 (5%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERIS 61
           L  V+L+ VY +          +V  +   G+I               S  L +RI  + 
Sbjct: 289 LHFVSLSDVY-ATRGSARKGGANVGVLFAEGEINVEVADSPFNTKKVVSDRLADRILEMG 347

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
            DD   AL+V ++SPGGS+Y  E ++ A+ K    KPV+  + + AAS GY +S  ++ I
Sbjct: 348 EDDDYDALVVRVNSPGGSSYISEQLWYAVHKASENKPVVISMGDYAASGGYYMSSGASYI 407

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
            A  +++ GSIG+    P      +K+GV    VK++      +       +   + Q  
Sbjct: 408 FAEPSTITGSIGIFGVVPNATKLANKIGVHQDVVKTAQHADLGALDRPWTEEERALFQQY 467

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           V+  Y  F++ VSE RN+   +   ++ GR+WTGA+A ++GL+D +GG ++      +  
Sbjct: 468 VNRGYALFLKRVSEGRNMTTAQVDSIAQGRVWTGAQALELGLVDELGGLQDAIAYAASQA 527

Query: 242 VDQ 244
              
Sbjct: 528 GYD 530



 Score = 82.0 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 100/270 (37%), Gaps = 29/270 (10%)

Query: 8   IKTRYVMLSLVTLTVVYFS--WSSHVEDNSPHVARIAIRGQIED---------------- 49
           I     ++ L++      +   ++  +     + +I +   I D                
Sbjct: 21  IFASLAVIVLISFIAALSANIANNTQQIKDGSILKIELA-HISDTYVSNPWSDLGLNKSD 79

Query: 50  -SQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103
            S++L     +E I+    DD    + ++++ PG    + EA+  A++  K     I   
Sbjct: 80  GSRDLPLSYVLEAIDEAKNDDRIKGIYLNVTDPGCGYASAEALRGALEDFKEDGKFIVSY 139

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
            +  +  GY ++  ++ +   +   +   G+     + K  LDK+GV +   K    K+ 
Sbjct: 140 SDFYSLKGYYLASVADQLYVNKEGSIAFDGLAGGAVFFKDLLDKIGVEMMVFKVGTFKSA 199

Query: 164 PSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD--GRIWTGAEAK 219
             P+  + ++      +   +   +   +  V  SRN+   +   L+D    + T     
Sbjct: 200 VEPYILNSMSEANRTQITSYLGDIWGRILSEVGASRNLDSVRLQSLADSMQSVQTTDSYL 259

Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
             GLID    Q++  ++L +L        +
Sbjct: 260 ANGLIDGALYQDQALEALCSLVEVDEKDDL 289


>gi|37523775|ref|NP_927152.1| protease IV [Gloeobacter violaceus PCC 7421]
 gi|35214780|dbj|BAC92147.1| protease IV [Gloeobacter violaceus PCC 7421]
          Length = 632

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 109/234 (46%)

Query: 45  GQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH 104
           G ++ S+ LI+ +    R +   A+++ ++SPGG+    + + R +++++ +KPV+  + 
Sbjct: 368 GPVQGSEPLIKALREAGRREDIKAVVMRVNSPGGAGLGCDLVRREVERLRAKKPVVVSMG 427

Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164
           + AAS GY I+  ++ IVA  ++  GSIG+    P V+     L ++ +  K        
Sbjct: 428 DSAASGGYWIAMDASAIVAQPSTQTGSIGIFAVIPNVEQLNRDLTLTPEVFKRGARADVL 487

Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLI 224
           S    +NP+  ++    + SSY  FV L ++ RN    +   L+ GR W G +A ++GL+
Sbjct: 488 SGNRPLNPEEAKIFDQELLSSYRRFVALAAKGRNKTVPQMEALAQGRTWLGRKALELGLV 547

Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278
           D +GG +                   +    +      L     + +   ++ +
Sbjct: 548 DRLGGIDTAIALAAEKAKVAPDTVALERLEGEQSTLASLLGAEATRMALRSLGI 601



 Score = 97.0 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 80/238 (33%), Gaps = 20/238 (8%)

Query: 32  EDNSPHVARIAIRG---------QIEDS--------QELIERIERISRDDSATALIVSLS 74
           +     V  I + G          I           ++ ++ +++ + D     +++ L 
Sbjct: 83  QIADNSVLEIKLSGDLPEKASEDPIAGLLGTPALTFKDALDNLKKAAIDTRIKGVVLRLD 142

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
                    E +  A+ + +          E  +  GY ++ A +      T      G+
Sbjct: 143 GTSLGWARVEELREALMQFRQTGKFAVGYAEGISERGYYLALALDRFYLPPTGGFEMNGL 202

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKA---EPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           +    ++   L K+G+ ++  +    K+   E       +    +M+   +   Y  FV 
Sbjct: 203 VSSNSHLPGLLAKIGIGVQYFRYGKYKSVSGETFGQPAFSEPVKEMINFNLTEQYETFVG 262

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
            V+ +R +P  +   L D    T   A    LID +   +EV   L       + + +
Sbjct: 263 AVATARKLPASEVRRLIDTNRPTAEWALANKLIDGIAYWDEVEAGLKKQAGIAADKDL 320


>gi|188587314|ref|YP_001918859.1| signal peptide peptidase SppA, 36K type [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179352001|gb|ACB86271.1| signal peptide peptidase SppA, 36K type [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 325

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/302 (23%), Positives = 128/302 (42%), Gaps = 28/302 (9%)

Query: 3   FVLKK------IKTRYVML---SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE- 52
           FVLK       I   +++      +          +   +    V  I + G+I ++   
Sbjct: 12  FVLKALIVVGGIAAFFIIALSSFFLLGGAFISLLDADPVEEDDLVYVIDLEGEISEAAGP 71

Query: 53  -----------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
                      + E +++   D +A A+++ ++SPGG+  A + I   I       P + 
Sbjct: 72  GPGGLGISPRIVQESLDKAKAD-NAEAVVLRVNSPGGTVAASQEIASIIDDF--ELPTVV 128

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
            + + A S GY IS A++ I A +TS  GSIGV+      +   D LG+ ++ +K+   K
Sbjct: 129 SMADSATSGGYYISAAADRIKAQDTSTTGSIGVISVMYNFQELYDNLGIEVEVIKTGEYK 188

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221
                F  +  +  Q++QD+ D  Y  FV  VS+ R++  +    ++ G I TG  A + 
Sbjct: 189 DMG--FETMTEEERQIIQDLSDEMYEHFVAEVSDYRDMDKEDVYEVATGEIMTGTAAYEQ 246

Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
           GL+D +GG +        L   +       W  P+  +      +   S L +   L ++
Sbjct: 247 GLVDGLGGIDRAVDKAGELAGIEDPNT--RWLEPEGLFDQLFFPMVQESDLLELDSLSEE 304

Query: 282 TK 283
           T+
Sbjct: 305 TE 306


>gi|29655269|ref|NP_820961.1| U7 family peptidase [Coxiella burnetii RSA 493]
 gi|153206991|ref|ZP_01945809.1| signal peptide peptidase SppA, 36K type [Coxiella burnetii 'MSU
           Goat Q177']
 gi|154705950|ref|YP_001425390.1| signal peptide peptidase [Coxiella burnetii Dugway 5J108-111]
 gi|165918732|ref|ZP_02218818.1| signal peptide peptidase SppA, 36K type [Coxiella burnetii RSA 334]
 gi|212213444|ref|YP_002304380.1| signal peptide peptidase [Coxiella burnetii CbuG_Q212]
 gi|212219494|ref|YP_002306281.1| signal peptide peptidase [Coxiella burnetii CbuK_Q154]
 gi|29542541|gb|AAO91475.1| signal peptide peptidase [Coxiella burnetii RSA 493]
 gi|120577064|gb|EAX33688.1| signal peptide peptidase SppA, 36K type [Coxiella burnetii 'MSU
           Goat Q177']
 gi|154355236|gb|ABS76698.1| signal peptide peptidase [Coxiella burnetii Dugway 5J108-111]
 gi|165917560|gb|EDR36164.1| signal peptide peptidase SppA, 36K type [Coxiella burnetii RSA 334]
 gi|212011854|gb|ACJ19235.1| signal peptide peptidase [Coxiella burnetii CbuG_Q212]
 gi|212013756|gb|ACJ21136.1| signal peptide peptidase [Coxiella burnetii CbuK_Q154]
          Length = 313

 Score =  123 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/293 (20%), Positives = 118/293 (40%), Gaps = 18/293 (6%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP-HVARIAIRGQIEDSQEL-----IERIE 58
           ++     +++L    L     S           +V+ + + G I  +        +  + 
Sbjct: 27  VRFAGWMFILLLFAILIFAPSSSELEARRGDGAYVSLVRMNGTIMSNTTFSALRVVPELR 86

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISC 116
           +   D ++  +++ ++SPGGS      I   I ++K +  K V+    +  AS  YL+S 
Sbjct: 87  KAFADKNSKGVVLLINSPGGSPVQASIIRDKIIELKKQYHKKVVVVGEDELASGAYLVST 146

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
            ++ I     +L GSIGV+         L K+GV+ +   +   K    PF  V P+ V+
Sbjct: 147 GADKIYVNNDTLTGSIGVIMGGFGFVDTLKKVGVTRRLFVAGDHKDRLDPFQPVKPEDVE 206

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
            +  V+   +  F+  V + R          +  G  WTG EA ++G++D       V +
Sbjct: 207 KINKVLAQVHQNFIDQVIQGRGNRLHGDRQEIFSGDFWTGKEAAQLGVVDGTANLWTVLE 266

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS---LLEDTIPLMKQTKVQ 285
                  +  ++  KD+    ++      N +      L  +T PL +Q +V 
Sbjct: 267 R------EFGVKDYKDYTTRVSFLQALFHNTATELYFHLTNETSPLREQMQVD 313


>gi|83859154|ref|ZP_00952675.1| putative protease IV [Oceanicaulis alexandrii HTCC2633]
 gi|83852601|gb|EAP90454.1| putative protease IV [Oceanicaulis alexandrii HTCC2633]
          Length = 623

 Score =  123 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 122/272 (44%), Gaps = 13/272 (4%)

Query: 15  LSLVT--LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRD 63
           L  V         +        S  +  I   G I D              E I R   D
Sbjct: 303 LGFVASDFFDYVEANREFNLIPSDKIVVIKAVGGIVDGNGDGGVIGGDQHAELIRRARLD 362

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIV 122
           D   A+++ + S GGSA+A E I   ++  +   K VI  +  +AAS GY I+  ++ I 
Sbjct: 363 DDVRAIVLRIDSGGGSAFASELIREELEMARLEGKIVIASMGGVAASGGYWIATPAHEIW 422

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A  T++ GSIG+    P  +  L ++GV    +  +    +PS F  V  +   ++Q  +
Sbjct: 423 AEPTTITGSIGIFGFIPTFEDSLAEIGVYEDGIALTETARQPSQFGGVTEEWDTILQSSI 482

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           ++ Y  F+ +V+ESRN+  D+   ++ GRIWTG +A   GL+D +GG +E   +  A   
Sbjct: 483 EAGYERFLSIVAESRNMTRDEVDAVAQGRIWTGQQAFDRGLVDQLGGYDEAIAAAAARAG 542

Query: 243 DQS-IRKIKDWNPPKNYWFCDLKNLSISSLLE 273
            +    ++ ++    + +   L+    S+ + 
Sbjct: 543 LEEGDYRVIEFRDEVDPFHQFLQMFGQSAGVA 574



 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 92/280 (32%), Gaps = 36/280 (12%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------- 50
           + +I   +V+L L+ + +     +   E     V   A  G + +               
Sbjct: 22  ILRIFGIFVILFLLIVFIGGLLSNDEFELADSGVLIFAPEGPVVEEPTTISPNDAFTASL 81

Query: 51  -----------QELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRKP 98
                       +++E   R + DD  T ++++L   GG    A   I   +   ++   
Sbjct: 82  LGGGPGSEVLLSDVVEGFRRATEDDDVTTIVMNLERFGGGYPAALHQIAHEMDAFRDAGK 141

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            I    +  +  GY ++  ++ I   +       G      + +  L++L V++   +  
Sbjct: 142 EIIVYGDNYSMTGYFLASHASQIYLHDMGGANVNGYAVYRTFFRSLLERLNVTVNVYRVG 201

Query: 159 PMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI---- 212
             K+   P+   E++  A +  + V    ++ +   V  +R +        +D       
Sbjct: 202 TFKSALEPYLGDEMSEPAAEANRYVFGDLWNAYQDSVEAARGLSDGALQTYADQFPELLV 261

Query: 213 ----WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                T A +   GL+D V G+      L           
Sbjct: 262 AQGGDTAAVSLNEGLVDEVIGRGHYRDLLEERFGRDESED 301


>gi|91069876|gb|ABE10807.1| signal peptide peptidase SppA [uncultured Prochlorococcus marinus
           clone ASNC1363]
          Length = 269

 Score =  123 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 72/264 (27%), Positives = 132/264 (50%), Gaps = 5/264 (1%)

Query: 33  DNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            +   +ARI I   I  S    +++ +++I  D    ALIV + SPGG+    + I+ AI
Sbjct: 8   KSKKRIARIVIDEPITSSTRVSVLKALKQI-EDREFPALIVRIDSPGGTVGDSQEIYSAI 66

Query: 91  QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           +++K++   VI     ++AS G  I  AS+ IVA   ++ GSIGV+ +   +   LDK+G
Sbjct: 67  KRLKDKGCKVIASFGNISASGGVYIGVASDKIVANPGTITGSIGVIIRGNNLSELLDKIG 126

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +  ++VKS   K   SP   ++ +   ++Q ++D SY  F   V++ RN+P ++    +D
Sbjct: 127 IKFETVKSGVFKDILSPDKPLSEEGRGLLQGLIDESYKQFTEAVADGRNLPVEEVRKFAD 186

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           GRI+TG +A ++GL+D VG +    +    +       +   +   K      +    + 
Sbjct: 187 GRIFTGTQALELGLVDKVGDEFVARELAAEMVNIDPKIQPLTFGKKKKKILGLIPGSRMI 246

Query: 270 SLLEDTIPLMKQTKVQGLWAVWNP 293
             + + I     +  + LW ++ P
Sbjct: 247 EKIINNIFFEFDSSNKVLW-LYKP 269


>gi|239995030|ref|ZP_04715554.1| signal peptide peptidase SppA, 67K type [Alteromonas macleodii ATCC
           27126]
          Length = 621

 Score =  123 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 119/229 (51%), Gaps = 11/229 (4%)

Query: 14  MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDD 64
           + S  T   V       +E +   VA +  +G I D                + +   DD
Sbjct: 308 LTSFNTYLKVVNPPMPVIESDMDKVAIVVAKGTILDGNQKAGTIGGDSTARLLRKARLDD 367

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVA 123
           +  A+++ + SPGGSA+A E I + + +++   KPVI  +   AAS GY I+ +++ I+A
Sbjct: 368 NVKAVVLQIDSPGGSAFASEIIRQEVLQLQQAGKPVIASMSTYAASGGYWIAASTDRIIA 427

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
           + +++ GSIGV   +   +  LD LG+    V S+ +    S    + P+  Q++Q  V+
Sbjct: 428 SPSTITGSIGVFGMFMTYENSLDYLGIHSDGVGSTELAG-FSTVRPLAPEFGQILQRNVE 486

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
           ++Y  F+ LVS +R +  ++   ++ GR+W G +A ++GL+D +G  ++
Sbjct: 487 NTYGNFLSLVSNARGMSVEEVDSVAQGRVWIGEDAIELGLVDQLGTVDD 535



 Score = 95.4 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/326 (13%), Positives = 104/326 (31%), Gaps = 40/326 (12%)

Query: 1   MEFVLKKIKTR-YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRG--QIEDS------- 50
           + F  K      ++++ +  +  +          N      + + G   IE         
Sbjct: 19  LNFTRKLFFNLIFIVIFVGLIIAITGQDDEQFTVNKDSALFLTLNGKLVIEKESIDPFEQ 78

Query: 51  -----------------QELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIFRAIQK 92
                            +++++ +E   +D    AL++ L     G       +  AI  
Sbjct: 79  FLQESLGSEPENPEVLVRDVVKVLENAQKDRRIKALVLDLQGLTGGGLDKLRTVANAIDA 138

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            K  +  +  + +  +   Y ++  ++ I       +   G      Y K  L+KL V+ 
Sbjct: 139 FKESEKPVYAIGDYFSQDQYYLAAHADSIYLNPMGGLMFEGYGRYGMYFKDMLEKLKVTT 198

Query: 153 KSVKSSPMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
              +    K+   P    +++ +A +  +  +D  +  +   V+ +R I         +G
Sbjct: 199 HIFRVGTYKSAVEPIMRNDMSEEAKEAEKQWLDGYWAQYKADVAAARGIDEANFDETLEG 258

Query: 211 RI--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
            +             A +   +D +  +EEV   L  L  +       +      Y    
Sbjct: 259 LLAKFEAAGGDFAQYALENNWVDALKTREEVRLELTELVGEDENNHGVNLTSFNTYLKVV 318

Query: 263 LKNLSI--SSLLEDTIPLMKQTKVQG 286
              + +  S + +  I + K T + G
Sbjct: 319 NPPMPVIESDMDKVAIVVAKGTILDG 344


>gi|332971034|gb|EGK10005.1| signal peptide peptidase SppA [Kingella kingae ATCC 23330]
          Length = 336

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 124/293 (42%), Gaps = 29/293 (9%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNS------------PHVARIAIRGQIEDSQE- 52
           +  +  + ++ L+    +       +                PH A + + G+I  S++ 
Sbjct: 42  RMWRNIWRVVGLLVFLAMLAGLRGGMRQGEQARESASRFAHQPHTAVVKLTGEIGGSEQR 101

Query: 53  -----LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVH 104
                L E ++   R+ +A A+I+  +SPGGS       F  +++++     I       
Sbjct: 102 NQVDILREGMQAAYRNPNAKAIIIHANSPGGSPVVSNIAFAEVRRMRAEHKNIPVYVVAQ 161

Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164
           +M AS  Y I+ A++ I A  +SL+GSIGV+         ++KLG+  +   +   K   
Sbjct: 162 DMCASGCYYIAAAADKIFADPSSLMGSIGVIGSSFDATGLMEKLGIQRRVRIAGNNKGMG 221

Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY--DKTLVLSDGRIWTGAEAKKVG 222
            PF+  +P+   + Q ++D  +  F++ V + R       +   L  GRI+TG EAKK G
Sbjct: 222 DPFTAESPEQQAIWQQMLDQIHGEFIQAVKQGRGNRLQEKQYPDLFSGRIFTGIEAKKAG 281

Query: 223 LIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
           L+D +G    V + +           + D+ P ++     L     + +    
Sbjct: 282 LVDDLGNVYSVARDVVK------APNLVDYTPEQDDLARLLSRHLGAQVQNQA 328


>gi|15807090|ref|NP_295819.1| endopeptidase IV-like protein [Deinococcus radiodurans R1]
 gi|6459892|gb|AAF11646.1|AE002045_6 endopeptidase IV-related protein [Deinococcus radiodurans R1]
          Length = 556

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 113/273 (41%), Gaps = 22/273 (8%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQELIERIE 58
           +   +     +      +  VA +++ G I                     S  ++  ++
Sbjct: 262 LAAVLDLLLPNKPGTPKAGKVAVVSVVGSIVTGKSKNNPLPLPLLGGPMAGSDTVVAALK 321

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118
               D +  A++V ++S GGSA A + ++R I    + KPV+  + E AAS GY ++  +
Sbjct: 322 HAKEDKATKAIVVYVNSGGGSALASDLMWREIA--TSDKPVVVVMGEYAASGGYYLATHA 379

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + IVA+  +L GSIGV+   P ++ F  + G+  + V         SP      +    +
Sbjct: 380 DKIVASPYTLTGSIGVVSGKPVMQEFNGRQGLKPERVGR-DRALMYSPSRPYTDEERAHI 438

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           +  +   Y  F   V+E R++  ++   +  GRIW+G +A ++GL+D +G      +   
Sbjct: 439 EKGIGEVYDRFTSRVAEGRDLSQERVNEIGRGRIWSGYDALELGLVDELGDLHRGLELAR 498

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
            L          +  P K     +    +  + 
Sbjct: 499 ELAGLPDDAPTWNAAPKKQGPLPEFVQEAAQAA 531



 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 68/169 (40%), Gaps = 3/169 (1%)

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
            ++V +S    +     AI   ++++   K  +  + ++  ++  + S A   I A E++
Sbjct: 88  GVLVRVSEFTAAPATAHAIREILRRLSENKRTVAYLPQLTMTSLIVASGA-QEIAAPESA 146

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSS 185
            V   G   +  ++  FL K G+  ++++    KA         ++    + +   +   
Sbjct: 147 DVMVSGFAAEPTFLGAFLKKHGIEFENLRIKEYKAALTRFSQDHMDEANREQLSAYLGGL 206

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
              +   +++ R +  +  L      + +   A   GLID V  ++E+ 
Sbjct: 207 EAAWAADLAQGRGVSEEDALGWLTADLTSAQGAVDAGLIDRVAYEDELI 255


>gi|331694042|ref|YP_004330281.1| peptidase S49 [Pseudonocardia dioxanivorans CB1190]
 gi|326948731|gb|AEA22428.1| peptidase S49 [Pseudonocardia dioxanivorans CB1190]
          Length = 293

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 63/276 (22%), Positives = 117/276 (42%), Gaps = 23/276 (8%)

Query: 31  VEDNSPHVARIAIRGQIE-----------DSQELIERIERISRDDSATALIVSLSSPGGS 79
              +   V+ + + G I            ++  + + +ER    D   A+ + ++SPGG+
Sbjct: 20  DRSDKGVVSLVRLHGVITPSSGPVPRAVLNAASVEKVLERAFSADGLVAVALQINSPGGA 79

Query: 80  AYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
                 I   I+ +   K  PV+    ++AAS GY ++CA + I A  TS+VGSIGV+  
Sbjct: 80  PTQSALIADRIRGLAEEKEVPVLAFCEDVAASGGYWLACAGDEIYAHATSIVGSIGVISA 139

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
              ++  +++ GV  +   +   K+   PF    P+ V+ ++ + D  +  F   V+E R
Sbjct: 140 GFGLQGLIERFGVERRLYTAGRAKSRLDPFLPEKPEDVEWLRGLQDQLHEMFTMWVTERR 199

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
               +    L  G +WTGA A + GLID +G    V    +         +I      + 
Sbjct: 200 GDRLNTERDLFTGEVWTGARAVETGLIDGLGTPRSVLADRF------PDAEIVPVESRRP 253

Query: 258 YWFCDLKNLSISSL----LEDTIPLMKQTKVQGLWA 289
                      ++     +   + + +  +V+ LWA
Sbjct: 254 LLARLGIGAPAAAATFSPVNSLLGIAEAAEVRALWA 289


>gi|254293569|ref|YP_003059592.1| signal peptide peptidase SppA, 36K type [Hirschia baltica ATCC
           49814]
 gi|254042100|gb|ACT58895.1| signal peptide peptidase SppA, 36K type [Hirschia baltica ATCC
           49814]
          Length = 590

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 124/288 (43%), Gaps = 22/288 (7%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRG-----------------QIEDSQELIERIERISR 62
           L  +       + D +P +A I   G                 QI  S  +  +I    +
Sbjct: 275 LIDIAQYTPKKIADKAPKIALIGGEGGIMPGSSGGDIFNPNAEQIIASDTVSSQIYDAGK 334

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNI 120
           D+S  A++  + S GGS  A + I+ AI+ V+N   KPV+  +  +AAS GY IS  ++ 
Sbjct: 335 DESIKAIVFRVDSGGGSPTASDQIWNAIEYVQNTYNKPVVISMGSVAASGGYYISMGADK 394

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-PMKAEPSPFSEVNPKAVQMMQ 179
           I A   ++ GSIGV      +   L K+GV+   +    P  +  +    ++ +    M+
Sbjct: 395 IYANRATITGSIGVYGGKFALAEGLRKIGVNPSRIDVGGPYASIYTSTERLSEQQRATMR 454

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +  +Y  F RL ++ R +  +    ++ GR+WTG  AK+ GL+D +GG  +  +    
Sbjct: 455 ASLARTYDRFTRLAADGRGMSQEALHEIAKGRVWTGVAAKENGLVDELGGLIDAIEGAKQ 514

Query: 240 LGVDQSIRKI--KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           L    + +++      P ++        L  S+    T+  + Q    
Sbjct: 515 LAGIDADKQVNLVSMTPEQDPVQAIGSMLGASAQSMHTLNQLSQIMGD 562



 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 100/275 (36%), Gaps = 28/275 (10%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARI-------------------AIRGQIED 49
               ++  +     +    S +  D +P  A I                   ++ GQ   
Sbjct: 12  FLALILFFIALPIFILTLVSGNASDVAPKGAVILEIDMRYEYPDQKPTDGLASLFGQ-TS 70

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH---EM 106
             +++ +++R + DD    +++  S  G  +   E I  AI+K++     +        +
Sbjct: 71  FVDILTKLDRAATDDHVKGVVLRASEMGFGSSRAEEIRSAIKKLQANDKFVLAHSQGFFV 130

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
              A Y    AS+ I     S +   G   +  ++K   D LG+S +       K  P+ 
Sbjct: 131 GGPAAYRAISASDEIWLQAGSDLSIPGFSLETLFLKGLFDNLGISAEIEAFHEFKNSPNV 190

Query: 167 FS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK---TLVLSDGRIWTGAEAKKV 221
           +   +      + M+++ +  +   +  ++  R            + +   ++  +A  +
Sbjct: 191 YKETDFTESHAKAMRELAEGLWQVSLIDIANDRADKMADNAILRDVLENSPYSSDQALDL 250

Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           GL+D +G  E++ +    L  +  +  I  + P K
Sbjct: 251 GLVDKLGWPEDLVRHAMGLAPNAELIDIAQYTPKK 285


>gi|156742495|ref|YP_001432624.1| signal peptide peptidase SppA, 36K type [Roseiflexus castenholzii
           DSM 13941]
 gi|156233823|gb|ABU58606.1| signal peptide peptidase SppA, 36K type [Roseiflexus castenholzii
           DSM 13941]
          Length = 561

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 118/248 (47%), Gaps = 3/248 (1%)

Query: 43  IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102
           I GQI  S+ +++ + +  R+    A+I+ ++SPGGSA+  E I+R ++++  RKPV+  
Sbjct: 311 IGGQIAGSESIVQALRQAERNPRLAAVILYVNSPGGSAFDSELIWREVRRLDRRKPVVAV 370

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
           + ++AAS GY ++  +  I+A   ++ GSIGVL   P +   + + GV+  ++      A
Sbjct: 371 MGDVAASGGYYVASGARTILAQRGTITGSIGVLIVRPVIDGLVKRAGVNTVAIGRGANSA 430

Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVG 222
                +    +    ++ ++D SY  F + V E R++  +    L+ GR+W G EA +  
Sbjct: 431 FFISDAP-TEQERAAVRALIDDSYTVFKQRVMEGRSMSEEALEPLAGGRVWMGGEAHESH 489

Query: 223 LIDVVGGQEEVWQSLYALGVDQSI--RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
           LID VGG  E       L          +      +            S  L + + L++
Sbjct: 490 LIDDVGGMPEALLKAQELAGLPRDQTAPLVLIGGGRGRLAPQTFPEEPSKTLREALALLR 549

Query: 281 QTKVQGLW 288
           Q  +  + 
Sbjct: 550 QPLIWAIL 557



 Score = 83.9 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 97/210 (46%), Gaps = 4/210 (1%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
              EL  R E ++ D     +++ + +        + + + I++ + +  +         
Sbjct: 61  SLSELRRRFEWLASDPQVKGVVLDIGTLTCGWATIQNLDQDIRRFREQGKLAVARITNPD 120

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP-- 166
           +  Y+ +CA+++IVA   SL+   G+  +  ++K  L K+ VS++    SP K       
Sbjct: 121 TKTYVAACAADLIVAPPVSLLTVTGLYAEVRFLKDALAKVDVSVEVTAVSPYKTAGDSLA 180

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
            SE++P+  + ++ ++D  Y   V  ++ +R+   D+   L D   W+   A++ GLID 
Sbjct: 181 CSEMSPENREQIERLLDQRYALIVETIANARHKTVDEVCSLIDTAPWSARRAQEAGLIDA 240

Query: 227 VGGQEEVWQSLYALGVDQ--SIRKIKDWNP 254
           V  ++E+   L +        + +I +W+ 
Sbjct: 241 VLYEDELPAFLASRTGASPAKLPEIAEWSQ 270


>gi|91203949|emb|CAJ71602.1| similar to signal peptide peptidase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 328

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 119/248 (47%), Gaps = 7/248 (2%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASA 110
           + E +     D    A+++ ++SPGG   A + ++  I + K   +K VI  + ++ AS 
Sbjct: 81  VKEELTLAKMDKQVKAILLRINSPGGKVTASDMMYYEIMRFKEETKKKVIACIMDIGASG 140

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           GY ++ +++ I+A  T++ GSIGV+     ++  L K+G++  SVK+   K   SP  ++
Sbjct: 141 GYYVAASADKIIAHPTTVTGSIGVIMINLSIEGLLQKVGIADASVKTGEHKDMGSPLKKM 200

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESR-NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
             +  ++  +++++ Y  F+ ++ E+R  I  +K   L+DGRI++  +A + GLID +G 
Sbjct: 201 TEEDRRIFSEILNAMYERFLCVIEENREGISMEKIRELADGRIYSAQQALENGLIDQIGY 260

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNP--PKNYWFCDLKNLSIS--SLLEDTIPLMKQTKVQ 285
            ++              R I    P   KN  +  L   S    +L    I     +   
Sbjct: 261 LDDAVSIAKKETNLTEARVILYHRPGSYKNNIYSQLTGASAGNINLFNIDIKTFIHSGAP 320

Query: 286 GLWAVWNP 293
               +W P
Sbjct: 321 SFMYIWMP 328


>gi|219886303|gb|ACL53526.1| unknown [Zea mays]
          Length = 565

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 118/259 (45%), Gaps = 16/259 (6%)

Query: 32  EDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSLSSPGG 78
           +     +A I   G I               +++LIE+I  +   +   A+I+ + SPGG
Sbjct: 258 QGGGEQIAIIRASGSITRTRSPLSAPSSGIVAEQLIEKIRTVRESEKYKAVILRIDSPGG 317

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            A A + ++R I+ + N KPV+  + ++AAS GY ++ A+ +IVA + +L GSIGV+   
Sbjct: 318 DALASDLMWREIRLLANSKPVVASMSDVAASGGYYMAMAAPVIVAEKLTLTGSIGVVTGK 377

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKA-EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
             ++   +++  + + +          +    + P   ++ +    ++Y  F    + SR
Sbjct: 378 FCLQKLYERIDFNKEIISKGRYAELNVNDQRPLRPDEAELFEKSAQNAYALFRDKAAMSR 437

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--KDWNPP 255
           ++  D+   ++ GR+W+G +A   GL+D VGG  +              +KI   + + P
Sbjct: 438 SMSVDQMESVAQGRVWSGHDAFSRGLVDSVGGLSQALAIAKQKANIPKDKKIQLVEVSKP 497

Query: 256 KNYWFCDLKNLSISSLLED 274
                  L  +  S L  D
Sbjct: 498 SPSLPEILSGIGGSLLGVD 516



 Score = 81.2 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 89/235 (37%), Gaps = 13/235 (5%)

Query: 35  SPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVSLSSPGGSAYAG 83
              V  + +RG+I D             ++ E   + + D   + + + +          
Sbjct: 12  KGSVLNMKLRGEISDQLKTRFSSGLSLPQICENFVKAAYDPRISGIYLHIEPLRCGWAKV 71

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           + I R I   K     +     +     Y ++CA   + A  ++ V   G+  Q  +++ 
Sbjct: 72  DEIRRHIVDFKKSGKFVVGYMPVCGEKEYYLACACGELYAPPSAYVALFGLTVQQTFLRG 131

Query: 144 FLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
            L+K+G+  +  +    K+  +      ++ +  +M+  ++D+ Y  ++  +S +     
Sbjct: 132 VLEKVGIEPEIQRIGKYKSAGDQLARKSMSNEVREMLAALLDNIYGNWLETISSTHGKKK 191

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           ++     +  ++  A  K+ G +  +   +EV   L      +  + ++  +  K
Sbjct: 192 EEIEGFINSGVYQVARLKEEGWVTDLLYDDEVMTLLKERVGQKDKKSLRMVDYSK 246


>gi|33519890|ref|NP_878722.1| protease IV, a signal peptide peptidase [Candidatus Blochmannia
           floridanus]
 gi|33504235|emb|CAD83498.1| protease IV, a signal peptide peptidase [Candidatus Blochmannia
           floridanus]
          Length = 625

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 117/242 (48%), Gaps = 14/242 (5%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS------------QELIERIERISR 62
            + +++       S+  + ++  +A I I+G I D               +  +I     
Sbjct: 306 FNAISMYDYKLQESNKQQHDNNQIAIICIQGTIIDGVNSNNISGSVGGDTIAYQIRNARF 365

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNII 121
           D    ++I+ ++SPGGS +A E I + I   +N  KPVI  +  +AAS GY I+  +N I
Sbjct: 366 DPKIQSIILRINSPGGSVHASELIRQEIIATRNSGKPVIVSMGNIAASGGYWIATPANFI 425

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
           +A+ +++ GSIGV      ++  LD +GV    V +SP+         +  +   +MQ  
Sbjct: 426 IASNSTITGSIGVFGIINTLEESLDAIGVHNDEVSTSPIANLSVA-KALPVEFKNIMQLY 484

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           VD+SY +F++ V++ R         ++ G IWTG++A K GLID +G  ++       L 
Sbjct: 485 VDTSYQYFIKTVAKFRCKTIADLDQIAQGHIWTGSDAIKHGLIDKIGDFDDAISKAVELA 544

Query: 242 VD 243
             
Sbjct: 545 HL 546



 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 75/205 (36%), Gaps = 11/205 (5%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAG 111
           ++  + +   D + T LI+SL +  G   +  E I + + + K    +I  + +    + 
Sbjct: 98  IVNILRQAKNDPNITGLILSLKNFSGGNQSSLEYIGKTLLEFKKSGKLIYAISDNYNQSQ 157

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SE 169
           Y ++  +N I       V   G+     Y +  L  L ++    +    K+   PF  + 
Sbjct: 158 YFLASYANKIYLTPQGSVDLRGISTSKLYYQSLLKNLKINTHVFRVGAYKSAVEPFIRNN 217

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKKV 221
           ++ +        ++  +  ++ ++S +RNI   +           L +    T   A   
Sbjct: 218 MSSQVRHEENIWINQLWDQYLNIISCNRNITKQQIFPGINTIFNELYNMNGDTANYAYHK 277

Query: 222 GLIDVVGGQEEVWQSLYALGVDQSI 246
             ID V  + ++   +  +      
Sbjct: 278 KWIDKVESRFDIENEMKKIFGKNKK 302


>gi|304413097|ref|ZP_07394570.1| protease IV (signal peptide peptidase) [Candidatus Regiella
           insecticola LSR1]
 gi|304283940|gb|EFL92333.1| protease IV (signal peptide peptidase) [Candidatus Regiella
           insecticola LSR1]
          Length = 607

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 129/285 (45%), Gaps = 25/285 (8%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERI---------ERISRDDS 65
            + +++       S         +A I I G I D  +    I          +   D  
Sbjct: 305 FNFISIYDY---QSQEQPQQDNEIAVILINGAIVDGAKTPGNIGGDAAAAQIRQARLDPK 361

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAA 124
             A+I+ ++SPGGSA A E I   +  ++   KP++  +  MAAS GY +S  +N I+A+
Sbjct: 362 IKAVILRVNSPGGSASASEVIRAELVALRRANKPLVVSMGGMAASGGYWVSTPANYIIAS 421

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
            ++L GSIG+       +  LD +GV    V +SP+    +    + P+  QMM+  ++ 
Sbjct: 422 PSTLTGSIGIFGVINTFENSLDNVGVHSDGVATSPLADV-AITKALPPEFSQMMKMTIEH 480

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            Y  F+ LV+ +R     +   ++ GR+WTG++A++ GL+D +G  ++  + +  L   +
Sbjct: 481 GYQTFIELVATARKKTIAQMDEVAQGRVWTGSDAQQRGLVDQLGDFDDAVKKVAELAKLK 540

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                         WF +  NL    ++ D I    Q  +   ++
Sbjct: 541 QYTL---------QWFSEQPNL--KEVILDQINTSMQAMLPPPFS 574



 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 98/284 (34%), Gaps = 39/284 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + FV + +   + +L +     +YF + +  E        + + G I D           
Sbjct: 19  LNFVRELVCNLFFILLIFIAISLYFQFQNKSEPVKG-ALLVDLNGIIVDKPVVNNKLRVW 77

Query: 52  ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92
                             E++E + +   D++ T +++SL++  G+     + I +A+ +
Sbjct: 78  GRELLGSSSTRLQENSLFEIVETLRQAKSDNNITGIVLSLNNLAGADQPSLQYIGKALSE 137

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            +N    I  + E  + A Y ++  +N I  A    V   G      Y K  LDKL VS 
Sbjct: 138 FRNSGKPIYAIGESYSQAQYYLASFANKIYLAPQGSVQLHGFSTNTLYYKSLLDKLKVST 197

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203
              +    K+   P     ++  A +     V+S +  ++  V+ +R +   +       
Sbjct: 198 HIFRVGTYKSAVEPMLRDNMSDAAREASSRWVESLWQNYLTTVAANRYLSPQQLFPSAPE 257

Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
               L          A    L+D +    EV   L         
Sbjct: 258 MITALQTKEGNLAKYALDNKLVDQIASNPEVETELSKTFGWDEE 301


>gi|288801210|ref|ZP_06406665.1| signal peptide peptidase SppA, 67K type [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288331821|gb|EFC70304.1| signal peptide peptidase SppA, 67K type [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 590

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 130/275 (47%), Gaps = 17/275 (6%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQ---------ELIER-----IERISRDDSATALIVSLS 74
            +   ++  +A    +G I  +Q         +++ +     +E++ +DD+  A+++ ++
Sbjct: 294 ENSTSDNNEIAVYYAQGTIVQNQAVGLFAQGGDIVSQTVCTDLEKLMKDDNIKAVVIRIN 353

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           S GG AYA E I+  + ++K +KPV+  + + AAS  Y +SC +N I+A  T+L GSIG+
Sbjct: 354 SGGGDAYASEQIWHQVTELKAKKPVVISMGDYAASGAYYLSCNANWIIAQPTTLTGSIGI 413

Query: 135 LFQYPYVKPFLD-KLGVSIKSVKSSPMKAE-PSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
               P     ++ KLGV    ++++   +        +N   V+ +   +   Y  F + 
Sbjct: 414 FGVIPDFSGLVNGKLGVKFDEIQTNKNSSFGNVFARPLNQDEVKYLTAKIQRGYSLFRKR 473

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           V+E R++  ++   ++ G +W G++A  + L+D +GG  E       L    +     ++
Sbjct: 474 VAEGRHLTIEQVEKIAQGHVWLGSDALNIHLVDQLGGLNEAIAKAAQLAKLTN-YTTNNY 532

Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
               ++     +    ++ +++ + L      + L
Sbjct: 533 PAQASWLDMFKEAEGRNNYIDEQLRLTLGDLYEPL 567



 Score = 95.8 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 93/257 (36%), Gaps = 23/257 (8%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------------QELIER 56
            +++   +  S SS +   +  V  + + G IE+                     +L+  
Sbjct: 26  LMISFVGMVASSSSKMAIKNNSVLVLNLSGTIEEQTKENILGQITGNTVNSLGLDQLLSA 85

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116
           I++   +D+   + +            + +  A+   +N    I    +      Y ++ 
Sbjct: 86  IQKAKSNDNIKGIYIEAGLLSSGYATLQEVRNALLDFRNSGKWIIAYGDEYTQGAYYVAS 145

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKA 174
            +N ++     ++   G+  Q  ++K  + K+GV    +K    K+    ++E  ++   
Sbjct: 146 VANKVLINPEGMLDWHGLAAQPMFIKDAVAKVGVRYNVIKVGKYKSATEMYTEDQMSDAN 205

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--GAEAKKVGLIDVVGGQEE 232
            + +   ++ ++    + V++SR +  D     +D  I      +     L+D +   ++
Sbjct: 206 KEQVGRFLNGTWQVLCQSVAKSRGVEVDSLNAYADRLIALEAATQLLSYKLVDGLVYTDQ 265

Query: 233 VWQSLYALGVDQSIRKI 249
           +   +  L   +    I
Sbjct: 266 IKPIINKLLGQEPTDVI 282


>gi|262200199|ref|YP_003271407.1| peptidase S49 [Gordonia bronchialis DSM 43247]
 gi|262083546|gb|ACY19514.1| peptidase S49 [Gordonia bronchialis DSM 43247]
          Length = 297

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 67/266 (25%), Positives = 118/266 (44%), Gaps = 15/266 (5%)

Query: 36  PHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
            HVA + + G I  S           +   ++R    +   A++V ++SPGGS    E I
Sbjct: 19  DHVAVVRLDGPIGASPVGRPGLTTDAVEPILKRAFETERLKAVVVVVNSPGGSPAQSEYI 78

Query: 87  FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
              I+++ + K  PV+    ++AAS GY I+CA++ I AA TS+VGSIGV+     +   
Sbjct: 79  AERIRQLASEKGVPVLAFCEDVAASGGYWIACAADEIFAAHTSIVGSIGVVSSGFGLADV 138

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK- 203
           L + GV  +   S   KA    FS   P+ V+ ++ +    +  F+  V + R    +  
Sbjct: 139 LSRFGVERRLYTSGDNKARLDTFSPAVPEDVEWLKGLQHQLHEAFITWVRQRRGRKLNAP 198

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              L  G +W G+ A +VGL+D +G    V         D  I  ++   P         
Sbjct: 199 DDQLFSGDVWVGSNAAEVGLVDGIGVMRSVI---AERYPDAEITVVQAPKPLLARVVGAQ 255

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289
            + + + +    +  + ++   G+ +
Sbjct: 256 MSTAGAGVAGGWLTAVAESLTTGILS 281


>gi|157413729|ref|YP_001484595.1| signal peptide peptidase SppA [Prochlorococcus marinus str. MIT
           9215]
 gi|157388304|gb|ABV51009.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus str. MIT 9215]
          Length = 269

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 73/264 (27%), Positives = 131/264 (49%), Gaps = 5/264 (1%)

Query: 33  DNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            +   +ARI I   I  S    +++ +++I  D    ALIV + SPGG+    + I+ AI
Sbjct: 8   KSKKRMARIVIDEPITSSTRVSVLKALKQI-EDREFPALIVRIDSPGGTVGDSQEIYSAI 66

Query: 91  QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           +++K++   VI     ++AS G  I  AS+ IVA   ++ GSIGV+ +   +   LDK+G
Sbjct: 67  KRLKDKGCKVIASFGNISASGGVYIGVASDKIVANPGTITGSIGVIIRGNNLSELLDKIG 126

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +  ++VKS   K   SP   ++ +   ++Q ++D SY  F   V+E RN+P +     +D
Sbjct: 127 IKFETVKSGVFKDILSPDKPLSDEGRDLLQGLIDESYKQFTEAVAEGRNLPVEDVRKFAD 186

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           GRI+TG +AK +GL+D +G +    +    +       +   +   K      +    + 
Sbjct: 187 GRIFTGTQAKDLGLVDEIGDEFVARELAAEMVNIDPKIQPLTFGKKKKKILGLIPGSRMI 246

Query: 270 SLLEDTIPLMKQTKVQGLWAVWNP 293
             + + I     +  + LW ++ P
Sbjct: 247 EKVINNIFFEFDSSNKVLW-LYKP 269


>gi|302531492|ref|ZP_07283834.1| signal peptide peptidase SppA [Streptomyces sp. AA4]
 gi|302440387|gb|EFL12203.1| signal peptide peptidase SppA [Streptomyces sp. AA4]
          Length = 281

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 111/272 (40%), Gaps = 18/272 (6%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQE-----------LIERIERISRDDSATALIVSLSSPG 77
               D    VA + + G I  +             +   + R    D   A+ + ++SPG
Sbjct: 15  GDRGDRKDVVAVVKLHGVITPTPSPLARGAINLGAVESALTRAFAHDRLKAVALQINSPG 74

Query: 78  GSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           G+      +   I+++ + K  PV+    ++AAS GY ++CA++ I A  TS+VGSIGV+
Sbjct: 75  GAPTQSGLVAERIRQLADEKGVPVLAFAEDVAASGGYWLACAADEIYAHRTSMVGSIGVI 134

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                    L++ G+  +   +   K+   PFS   P+ V+ ++++    +  FV  V E
Sbjct: 135 SGGFGFTGLLERFGIERRLHTAGANKSRLDPFSPEKPEDVEWLKNMHGQLHELFVEWVKE 194

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
            R      +  L  G +W G +A  +GL+D +G   E+ +  Y                 
Sbjct: 195 RRGDRLTDSADLFTGDVWLGQKAVDLGLVDGLGSLREIVRERYPDAEIS-----VAEPKK 249

Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
                  L   + +S L D +         GL
Sbjct: 250 PLLARLGLGAPAAASALLDAVTTKAAWSRFGL 281


>gi|224437564|ref|ZP_03658522.1| hypothetical protein HcinC1_06345 [Helicobacter cinaedi CCUG 18818]
 gi|313144017|ref|ZP_07806210.1| protease IV [Helicobacter cinaedi CCUG 18818]
 gi|313129048|gb|EFR46665.1| protease IV [Helicobacter cinaedi CCUG 18818]
          Length = 267

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 123/268 (45%), Gaps = 4/268 (1%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSP 76
           +  +  V        E++ P+VA++ +   I +S+   + +++I  +++   +++ + SP
Sbjct: 1   MFIVLFVIVVGGDESENDPPNVAKLHLTMPIYESESFAQAVKKIKENENIKGVLLVIDSP 60

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GG   A   I   I+ +  + PVI  V    AS  Y     +N I A   +L+GS+GV+F
Sbjct: 61  GGLVGASIEIADMIKDLAQKMPVIAYVQGSMASGSYYAGMYANEIYANRGALIGSVGVIF 120

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
               ++  + K+GV  + +K+   K   +   + + +  Q +++++   Y  F   V ++
Sbjct: 121 SGVNIEELMQKVGVKEQGIKAGAFKEIGTMTRKWSDEERQFLENLLQEQYAMFYNDVLQA 180

Query: 197 RNIPY--DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           R            ++G++++  +A ++GLID V   +   ++L        +  ++    
Sbjct: 181 RGEKLKSKDYHDFAEGKVFSANKALELGLIDKVESMQGAMEALRQKVGLDKLIWLE--KD 238

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQT 282
               +   L +   S +L  ++P +K +
Sbjct: 239 KFETYMDKLFDTMNSKILSLSLPSLKAS 266


>gi|262039550|ref|ZP_06012849.1| protease IV [Leptotrichia goodfellowii F0264]
 gi|261746428|gb|EEY33968.1| protease IV [Leptotrichia goodfellowii F0264]
          Length = 549

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 129/282 (45%), Gaps = 12/282 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATA 68
           V+       +      +   +A I + G I            + + E+++++    +   
Sbjct: 264 VSFEDYLSIYKEKKNKSKDTIAIINLEGIIEPKKSNKVNITYKNVCEKLDKLEDIKNLKG 323

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           L++ ++SPGGSA   E I + ++K+    P+   + ++ AS GY I+ A   I A   +L
Sbjct: 324 LVLRINSPGGSALESEKIHQKLKKL--DVPIYISMGDVCASGGYYIASAGKKIFADSMTL 381

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIGV+  YP +   L+K+ V+I+  +        + F  ++ ++ + +   ++  Y  
Sbjct: 382 TGSIGVVLMYPELSETLNKIDVNIEGFEKGKGFDIFNIFETLSEESKEKIIHTMNEVYSE 441

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR- 247
           F   V  +R +  ++   ++ GR+W G+EA  + LID +G  E+  +++      +  + 
Sbjct: 442 FKSHVIAAREMSEEELEKIAGGRVWLGSEAVNINLIDEIGSLEKSVETMVKDLKLEKYKV 501

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +I +          D+K   IS  LED I  M+    + L+ 
Sbjct: 502 EIIELKKSLKETLTDIKAPLISEELEDKIRFMQNNVNRILYY 543



 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 83/222 (37%), Gaps = 6/222 (2%)

Query: 41  IAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI 100
           I I  +I    ++++ ++ ++ D +   +I+ +          E +     ++   K ++
Sbjct: 61  IEINSKI-SFYDVLQGLKNLTTDKNIEKIIIDVDKLNLPLAKWEELSEIFDEIGKNKELV 119

Query: 101 TEVHEMAASAGYLISCASNIIVAA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
                           AS + +     S V   G  ++ PY K FL K G+ +  +    
Sbjct: 120 AIGTFFDERKYRYAIIASKVFMLNTRQSTVCFRGYEYKEPYWKSFLAKFGIKMNILHIGD 179

Query: 160 MKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
            K   E     +++P+  Q + ++ +S +  F++ V   R +  +   +L+   I+ G +
Sbjct: 180 YKVAGENYSHDKMSPEKKQSILNIKESLFRNFIKSVENKRGVNIEN-EILNGDFIFVGTD 238

Query: 218 -AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            A +  LID V   EE+  +     V                
Sbjct: 239 KALESKLIDGVADYEEIGINYKEDTVSFEDYLSIYKEKKNKS 280


>gi|223936754|ref|ZP_03628664.1| signal peptide peptidase SppA, 36K type [bacterium Ellin514]
 gi|223894605|gb|EEF61056.1| signal peptide peptidase SppA, 36K type [bacterium Ellin514]
          Length = 354

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 75/270 (27%), Positives = 118/270 (43%), Gaps = 27/270 (10%)

Query: 30  HVEDNSPHVARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGS 79
              D    +A I + G I               + E++ R   DD   A+I+ ++SPGG 
Sbjct: 59  RDNDAENKIAVIDVEGVIAGGASEQGSIGMVSSIKEQLRRAKADDLVKAVILRVNSPGGE 118

Query: 80  AYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
             A + I  AI K +  ++KPV+  +  +AAS GY +S   + IVA E ++ GSIGV+  
Sbjct: 119 VLASDEIANAITKFRTESKKPVVVSMGSLAASGGYYVSAPCDWIVANELTITGSIGVIMH 178

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAE---PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
               +  LDK+GV  +  KS   K          EV P+  +M+Q ++D +++ F  +V 
Sbjct: 179 GFNYRSLLDKVGVRPEVYKSGKFKDMLSGTKSPEEVLPEERKMVQALIDETFNKFKDVVR 238

Query: 195 ESRNIPYD---------KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-Q 244
             RN  Y               +DGRI +G EA+K+G +D VG  E        LG   +
Sbjct: 239 SGRNAAYKAHQGRKLSSDWEDYADGRILSGKEAEKLGFVDQVGDLEVAVTKAEELGHVSK 298

Query: 245 SIRKIKDWNPP--KNYWFCDLKNLSISSLL 272
               +  + P    +  F      +  S  
Sbjct: 299 DQANLIQYQPLFDLSNLFRLFGESNAKSAT 328


>gi|315634116|ref|ZP_07889405.1| signal peptide peptidase SppA [Aggregatibacter segnis ATCC 33393]
 gi|315477366|gb|EFU68109.1| signal peptide peptidase SppA [Aggregatibacter segnis ATCC 33393]
          Length = 628

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 112/236 (47%), Gaps = 11/236 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSL 73
           +       + +    +A + + G I D +          +   + +   D     +++ +
Sbjct: 314 LASLPDRLIGETDNKIAVVNVEGAIVDGESDEENAGGDTIAMLLRQAHDDKDVKGVVLRV 373

Query: 74  SSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           +SPGGSA+A E I + +  ++   KPV+  +  MAAS GY IS  ++ IVA + ++ GSI
Sbjct: 374 NSPGGSAFASEIIRQEVTHLQKAGKPVVVSMGGMAASGGYWISSTADYIVADKNTITGSI 433

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           G+    P  +  + K+GVS   VK+S +       S ++ +   ++Q  ++  Y  F+  
Sbjct: 434 GIFAVLPTFENTIKKIGVSADGVKTSDLALGSLL-SPLSAELNDVLQLEIEHGYDQFLTK 492

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           VSE R++   +   ++ G++W G+EA    L+D +G  +        L  ++   +
Sbjct: 493 VSEGRHLTKAQVDKVAQGQVWLGSEALAHKLVDELGNLDTALGKAMELVNERRAEQ 548



 Score = 79.7 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 111/310 (35%), Gaps = 46/310 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-------RIAIRGQIEDSQE- 52
           + F+ + +    V L  V L +  F+     +     V         + + G + D+++ 
Sbjct: 15  LNFI-RDLVMNIVFLIFVLLALSVFTLIVGADKQEKVVLKGDQGALLLQLDGYLADNRDA 73

Query: 53  ------------------------LIERIERISRDDSATALIVSLSSPGGSAYAG-EAIF 87
                                   +I  I+  ++DD    L++ L+   G      E + 
Sbjct: 74  QSSFKSMLKELDNQRIAQQYSTFDVIYAIDAAAQDDKVKGLVLDLNYFQGGDLPSLEYVG 133

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            AI+  K+    +    +    + Y ++  ++ I       V   G+  +  Y K  LDK
Sbjct: 134 EAIENFKDSGKQVIAYSDSYNQSQYFLASYADEIYMNPIGSVSIEGLAQETLYYKEMLDK 193

Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204
           L V+    +    K+   PF  ++++P+A   +Q  +++ +  +   V+ +R+IP     
Sbjct: 194 LDVNPHVFRVGTYKSAVEPFLRNDMSPEARANLQRWLNTMWENYTAQVAINRDIPKALVT 253

Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI--RKIKDWNPP 255
                    L   +  + A A K  LI  V  + ++ + L AL  +      K  D+   
Sbjct: 254 PTANTYLTELKALKGDSTAYAVKRKLITDVLDRFDLNRKLTALFGEDKEHQPKTVDFETY 313

Query: 256 KNYWFCDLKN 265
                  L  
Sbjct: 314 LASLPDRLIG 323


>gi|150402249|ref|YP_001329543.1| signal peptide peptidase SppA, 36K type [Methanococcus maripaludis
           C7]
 gi|150033279|gb|ABR65392.1| signal peptide peptidase SppA, 36K type [Methanococcus maripaludis
           C7]
          Length = 307

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 69/253 (27%), Positives = 130/253 (51%), Gaps = 14/253 (5%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------ELIERIE 58
           V L ++   V +         +S ++A I I G I                  + IE I+
Sbjct: 11  VFLVIILFLVGFILLLPGDGISSKNIALINIDGTITSQTSETGLFSEFEPSVNDYIEWID 70

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118
              +D +  A+I+ ++SPGG   A E + R I++    K V+  +  M  SA Y  + ++
Sbjct: 71  DAEKDSNIKAIIIKINSPGGEVIASEKLSRKIKEASEEKVVVAYIETMGTSAAYQAASST 130

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I+A + +LVG+IGV  +  +    ++KLG+++ ++KS   K   SP   +  +  +M+
Sbjct: 131 DYILAEKQALVGNIGVRMEILHYYGLMEKLGINVTTIKSGTYKDIMSPTRPMTEEEQKMI 190

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           + +VD SY+ FV  V+E+RN+  ++TL ++DG+I++G +A+KVGL+D+ G + +      
Sbjct: 191 ESIVDESYYEFVSWVAENRNMTINETLEVADGKIYSGIQAEKVGLVDMTGTEGDAIDIAS 250

Query: 239 ALGVDQSIRKIKD 251
            +    +      
Sbjct: 251 KMANITNPEVYVY 263


>gi|328954249|ref|YP_004371583.1| signal peptide peptidase SppA, 36K type [Desulfobacca acetoxidans
           DSM 11109]
 gi|328454573|gb|AEB10402.1| signal peptide peptidase SppA, 36K type [Desulfobacca acetoxidans
           DSM 11109]
          Length = 338

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 119/243 (48%), Gaps = 2/243 (0%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASA 110
           L E +++ + D    AL+V L SPGG+  A + I+  +Q+ K +   P++  V  +AAS 
Sbjct: 91  LKEELQKAAADRRLKALVVRLHSPGGTVAAADLIYHELQQFKQQHRLPLVVSVLGLAASG 150

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           GY ++ A+++IVA  TSL+GSIGV+     +K  L++ GV  + VK+  +K   SPF   
Sbjct: 151 GYYLAQAADVIVAQPTSLIGSIGVIALKFNLKGLLNRFGVETELVKTGRLKDLWSPFRPA 210

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             +  ++MQ ++D  +  FV +V+  RN        L DGR++T  +A  + L+D +G  
Sbjct: 211 TAEEARIMQALLDDFHRRFVAVVAAGRNFDPATAQRLGDGRLFTATQALDLNLVDQLGYL 270

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
           ++ +     L   ++ R I                +    L     P+     +   + +
Sbjct: 271 DDAFNRAKELAGIETARIIMYHTADSYRGNVYATPMPQQGLGVLPDPVSPTLALPQFYYL 330

Query: 291 WNP 293
           W P
Sbjct: 331 WWP 333


>gi|257452656|ref|ZP_05617955.1| protease IV [Fusobacterium sp. 3_1_5R]
 gi|317059195|ref|ZP_07923680.1| protease IV [Fusobacterium sp. 3_1_5R]
 gi|313684871|gb|EFS21706.1| protease IV [Fusobacterium sp. 3_1_5R]
          Length = 564

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 66/268 (24%), Positives = 122/268 (45%), Gaps = 9/268 (3%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPG 77
           +     YFS          ++A + + G IED    ++ ++ I +D +   +I+ ++SPG
Sbjct: 284 IISIQEYFSLVKMKTRPKNYLALLNLEGTIEDETLFLDEVKAIQKDQNVKGIILRINSPG 343

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           GSA   + ++ A++K++ + PV   +   AAS GY ++ A   I A+  S+ GSIGV+  
Sbjct: 344 GSALVADTMYHAVKKLREKIPVYVSISGTAASGGYYVAAAGEKIFASPLSVTGSIGVVSM 403

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
            P       K  V+ +S+         S    ++ +    +++     Y  F+ +VS +R
Sbjct: 404 IPNFSNLEKKANVTTESISKGKYADLYSYLQPLSEENYNRIREGNLGVYQDFLEVVSSNR 463

Query: 198 NIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK------ 250
           NI  D     L+ GR+W G EAK+ GLID +GG E    +L       ++  ++      
Sbjct: 464 NIKKDFLDKNLAQGRVWLGIEAKENGLIDELGGLEATIYALEQDKKLGTLPILQVSKNDV 523

Query: 251 --DWNPPKNYWFCDLKNLSISSLLEDTI 276
              +      +   L +     + +D +
Sbjct: 524 FGQYLGKYRKFLSVLPSSMQQKVPKDRL 551



 Score = 56.5 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 104/278 (37%), Gaps = 35/278 (12%)

Query: 6   KKIKTRYV--MLSLVTLTVVYFSWSSHVED----------------NSPHVARIAIRGQI 47
           +++ + ++  +LSL+ L +V  ++ S++                  +SP    I I   +
Sbjct: 17  REVCSFFIKLVLSLILLAIVVGTFISYISKENTTEIKQGSYVLLRASSPLSEHIPIPDPL 76

Query: 48  EDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
              +      E++  ++ I +D     +++       +    E I   +QK++     + 
Sbjct: 77  SLQEKHMTFFEVLYALDSIRQDQRIQGVLLDADFLSWNKAQLEEIGNKLQKLEEEGKKVI 136

Query: 102 EVHEMAASAGYLISCASNIIVAA--ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
              +      Y ++  +  IV      +        ++  Y K  LD+ GVSI  +    
Sbjct: 137 TTLQEVNRNNYFLASYTKEIVMTPIHAASSNISPYHYEELYWKNLLDRFGVSINVIPIGD 196

Query: 160 MKAEP--SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA- 216
            K+       S+++ +  + M  ++D SY + +  ++ +R +  +      +   + G  
Sbjct: 197 YKSYMENYSHSQMSKEFRENMTRLLDKSYDYSIEAIANNRKLEKNTLKAWIENGEFMGTS 256

Query: 217 --EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
                + GLI     + E    +     D  I  I+++
Sbjct: 257 FPTLFEKGLI----TKGEYPNRIRDEIGDDKIISIQEY 290


>gi|331091470|ref|ZP_08340308.1| hypothetical protein HMPREF9477_00951 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404026|gb|EGG83576.1| hypothetical protein HMPREF9477_00951 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 327

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 116/255 (45%), Gaps = 25/255 (9%)

Query: 34  NSPHVARIAIRGQIEDSQ---------------ELIERIERISRDDSATALIVSLSSPGG 78
           N  +V  + + G I++                 + +E I+R+  D S   +++ + SPGG
Sbjct: 52  NREYVGVVNVVGTIQEQTTSDGIFDTSEGYQHLDTLEYIDRMKEDSSNKGILLRVDSPGG 111

Query: 79  SAYAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           + Y  E ++  +++ +        T +   AAS GY IS  S+ I A   +  GSIGV+ 
Sbjct: 112 TVYESEELYLKLKEYQKETNRPVWTYMEHYAASGGYYISAPSDKIYANPNTTTGSIGVII 171

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
               +    +KLG+   S+ S   K      S++N +   + Q +VD SY  FV +V++ 
Sbjct: 172 SGFDMTGLYEKLGIRSYSITSGKNKD----MSQMNEEQTAIYQSIVDESYGRFVEIVADG 227

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R +  ++   L+DGRI++  +AK  GL+D +G  +++ + +     +     +  + P  
Sbjct: 228 RKMSEEEVRKLADGRIYSAKQAKANGLVDEIGLYDDMKKDMSKEIGE----NVIFYEPST 283

Query: 257 NYWFCDLKNLSISSL 271
                      + SL
Sbjct: 284 EPSMLASFFGKLESL 298


>gi|240950308|ref|ZP_04754583.1| protease IV, signal peptide peptidase [Actinobacillus minor NM305]
 gi|240295210|gb|EER46018.1| protease IV, signal peptide peptidase [Actinobacillus minor NM305]
          Length = 622

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 69/267 (25%), Positives = 123/267 (46%), Gaps = 15/267 (5%)

Query: 33  DNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                +A I I G+I           +  LI +++R+ +D +   LI+ ++SPGGSA A 
Sbjct: 323 KAPNKIAVINIEGEITMGESLEDTAGADTLIRQLQRVRQDKTVRGLILRINSPGGSALAS 382

Query: 84  EAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + ++ ++    PV++ +  MAAS GY I+  S+ IVA   +L GSIG+       +
Sbjct: 383 ELIRQEVEAIQQAGIPVVSSMGGMAASGGYWIAATSDAIVADPNTLTGSIGIFGVLFNFE 442

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                LGV    + +SP+         ++    +++Q  V+  Y  F+ LVS  R +   
Sbjct: 443 KTAQNLGVREDGISTSPLAEISGL-KPLSSHQSELIQMSVEQGYREFLDLVSRGRKMDLA 501

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL----GVDQSIRKIKDWNPPKNY 258
           K   ++ G++W G +A+ +GL+D +G  ++    L  L      +Q+  +I+ + P    
Sbjct: 502 KVDQIAQGQVWLGQKAQSLGLVDQLGNFDDTLALLGNLINRKLKEQNKPEIETFTPQWFT 561

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQ 285
              +     IS  L     L     + 
Sbjct: 562 EQDESLFGEISRSLNAKAKLNLAGWLN 588



 Score = 76.6 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 94/290 (32%), Gaps = 43/290 (14%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV-------ARIAIRGQIEDSQ--------- 51
           +   +++   V   +V    + + +  S  +         + + G + D++         
Sbjct: 20  MSLFFILFIFVAAAIVGLVNTFNAKQPSDALVHFDKGALILDLNGYLADNREEYADFYRL 79

Query: 52  ----------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQKVK 94
                           ++++ ++    D   T L++ L    G  Y     + + I   K
Sbjct: 80  IESEMGNEQPKKYSTFDIVDALKNAQTDPRITGLVLELDKFEGGDYPSLTYLGKGITAFK 139

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
                +  +      + Y ++  ++ I       V   G+ +   Y K   DK+      
Sbjct: 140 TSGKPVIAIGSSYGQSQYYLASFADQIYLNRAGAVELQGLNYSNLYFKSLFDKIEAKPYI 199

Query: 155 VKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
            +    K+   P    E++ +A Q  +  ++  +    + ++++R I   K L   D  +
Sbjct: 200 FRVGTYKSAVEPLIRDEMSEEAKQNAKGWLEPMWKNLQQGIADNRQIDVGKILPEIDRLL 259

Query: 213 WTGAE--------AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
               +        A + GLI+ V  + E+ Q L            K    
Sbjct: 260 ALRKQHKGNEATFALQQGLINEVKTRAEMRQLLVEKFGADEENDFKSIRY 309


>gi|257076483|ref|ZP_05570844.1| putative signal peptide peptidase SppA [Ferroplasma acidarmanus
           fer1]
          Length = 239

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 66/237 (27%), Positives = 117/237 (49%), Gaps = 6/237 (2%)

Query: 37  HVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           +++ +  +G I  S     +  +  I + +   AL++ ++S GG A A E ++  + K+ 
Sbjct: 2   YISVLNFKGTITGSSPGTYMPALRYIEKKNKVKALLLIINSGGGDANATEILYNQLMKIS 61

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
           ++KPV   +  + AS  Y ++C++  I A  TSLVGSIGV+   P    FLD LG+ ++ 
Sbjct: 62  SKKPVYALIEGIGASGAYWLACSAEKIFAMRTSLVGSIGVISMSPDFSEFLDTLGIKMRI 121

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
            K    K   SPF  +  +   +  +++   Y  F   V + RN+  D    ++ G +++
Sbjct: 122 NKVGKYKDINSPFRPMTEEENAIYNNIMKDVYSVFREEVKKRRNLGEDIMEEIATGLVFS 181

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
             +AKK GLID +   E V   L A     SI+ +     PK  +   L ++S  ++
Sbjct: 182 AEQAKKNGLIDGIANLETVVDELKAKTGTNSIKNL----TPKRPFISRLMSMSFEAI 234


>gi|134096734|ref|YP_001102395.1| signal peptide peptidase [Saccharopolyspora erythraea NRRL 2338]
 gi|291008456|ref|ZP_06566429.1| signal peptide peptidase [Saccharopolyspora erythraea NRRL 2338]
 gi|133909357|emb|CAL99469.1| possible signal peptide peptidase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 298

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 117/275 (42%), Gaps = 20/275 (7%)

Query: 29  SHVEDNSPHVARIAIRGQIE-----------DSQELIERIERISRDDSATALIVSLSSPG 77
               +  P VA + + G I             +Q     + R    D  +A+++S++SPG
Sbjct: 26  GEKAERGPVVAVVKLHGVITPTPSPVSRSTISAQTTESALTRAFGHDRLSAVVLSINSPG 85

Query: 78  GSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           G+      +   I+++ + K  PV+    ++AAS GY ++CA++ I A +TS+VGS+GV+
Sbjct: 86  GAPTQSALVADRIRELADEKKVPVLAFCEDVAASGGYWLACAADEIHAHQTSMVGSVGVV 145

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                    LD+ GV  +   +   K    PFS      V+ +  +    +  F + V +
Sbjct: 146 SATFGFNGLLDRFGVERRVYTAGDHKVRLDPFSPEKEDDVRWLHGLQAELHDQFQQWVRD 205

Query: 196 SRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
            R          L  G +++GA+A ++GL+D VG    + +  +          +    P
Sbjct: 206 RRGERLKGTDEELFSGEVYSGAKALELGLVDGVGSLRGIVRRKF------PDAHLVTVEP 259

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
            K            S+ L     +++  + + +W+
Sbjct: 260 RKPLLAKLGVGSPASARLGGVGAVVEALEHRAMWS 294


>gi|242062658|ref|XP_002452618.1| hypothetical protein SORBIDRAFT_04g029200 [Sorghum bicolor]
 gi|241932449|gb|EES05594.1| hypothetical protein SORBIDRAFT_04g029200 [Sorghum bicolor]
          Length = 672

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 62/259 (23%), Positives = 120/259 (46%), Gaps = 16/259 (6%)

Query: 32  EDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSLSSPGG 78
           +     +A I   G I               +++LIE+I  +   +   A+I+ + SPGG
Sbjct: 365 QGGGEQIAIIRASGSITRTRSPLSAPGSGIIAEQLIEKIRTVRESEKYKAVILRIDSPGG 424

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            A A + ++R I+ + N KPV+  + ++AAS GY ++ A+ +IVA + +L GSIGV+   
Sbjct: 425 DALASDLMWREIRLLANSKPVVASMSDVAASGGYYMAMAAPVIVAEKLTLTGSIGVVTGK 484

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSP-FSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
             ++ F +++  + + +         +     + P   ++ +    ++Y  F    + SR
Sbjct: 485 FCLQKFYERIDFNKEILSKGRYAELNAADQRPLRPDEAELFEKSAQNAYALFRDKAAMSR 544

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--KDWNPP 255
           ++  D+  +++ GR+W+G +A   GL+D VGG  +              +KI   + + P
Sbjct: 545 SMSVDQMEIVAQGRVWSGHDAFSRGLVDSVGGLSQALAIAKQKANIPKDKKIQLVEVSKP 604

Query: 256 KNYWFCDLKNLSISSLLED 274
                  L  +  S L  D
Sbjct: 605 SPSLPEILSGIGGSLLGVD 623



 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 93/271 (34%), Gaps = 15/271 (5%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSA 66
           + + +               V  + +RG+I D             ++ E   + + D   
Sbjct: 102 LAVKLRMLVAPPWQRVRKGSVLNMKLRGEISDQLKTRFSSGLSLPQICENFVKAAYDPRI 161

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
           + + + +          + I R I   K     +     +     Y ++CA   + A  +
Sbjct: 162 SGIYLHIEPLRCGWAKVDEIRRHIVDFKKSGKFVVGYMPVCGEKEYYLACACGELYAPPS 221

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDS 184
           + V   G+     +++  L+K+G+  +  +    K+  +      ++ +  +M+  ++D+
Sbjct: 222 AYVALFGLTVGQTFLRGVLEKVGIEPEIQRIGKYKSAGDQLARKSMSNEVREMLATLLDN 281

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            Y  ++  +S +     ++     +  ++  A  K+ G I  +   +EV   L      +
Sbjct: 282 IYGNWLETISSTLGKKKEEIEGFINSGVYQVARLKEEGWITDLLYDDEVMTLLKERVGQK 341

Query: 245 SIRKI--KDWNPPKNYWFCDLKNLSISSLLE 273
             + +   D++         L        + 
Sbjct: 342 DKKSLRMVDYSKYSRVSKQTLGLQGGGEQIA 372


>gi|126696719|ref|YP_001091605.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus str. MIT 9301]
 gi|126543762|gb|ABO18004.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus str. MIT 9301]
          Length = 269

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 74/264 (28%), Positives = 134/264 (50%), Gaps = 5/264 (1%)

Query: 33  DNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            +   +ARI I   I  S    +++ +++I  D    ALIV + SPGG+    + I+ AI
Sbjct: 8   KSKKRMARIVIDEPITSSTRVSVLKALKQI-EDREFPALIVRIDSPGGTVGDSQEIYSAI 66

Query: 91  QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           +++KN+   VI     ++AS G  I  AS+ IVA   ++ GSIGV+ +   +   LDK+G
Sbjct: 67  KRLKNKGCKVIASFGNISASGGVYIGVASDKIVANPGTITGSIGVIIRGNNLSELLDKVG 126

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +  ++VKS   K   SP   ++ +  +++Q ++D SY  F   V++ RN+P ++    +D
Sbjct: 127 IKFETVKSGVFKDILSPDKPLSEEGRRLLQGLIDESYKQFTEAVADGRNLPVEEVRKFAD 186

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           GRI+TG +AK++GL+D VG +    +    +       +   +   K      +    + 
Sbjct: 187 GRIFTGTQAKELGLVDEVGDEFVARELAAEMVNIDPKIQPLTFGKKKKKILGLIPGSKMI 246

Query: 270 SLLEDTIPLMKQTKVQGLWAVWNP 293
             + + I     +  + LW ++ P
Sbjct: 247 EKIINNIFFEFDSSNKVLW-LYKP 269


>gi|94499597|ref|ZP_01306134.1| Periplasmic serine protease (ClpP class) [Oceanobacter sp. RED65]
 gi|94428351|gb|EAT13324.1| Periplasmic serine protease (ClpP class) [Oceanobacter sp. RED65]
          Length = 322

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 128/291 (43%), Gaps = 15/291 (5%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIE 58
           +  K+ T   + + + + +     SS +  +    A + +RG I D +E     ++  + 
Sbjct: 37  IFFKLLTFVYLFAAILIFMPSDVDSSKLAASGKFTALVEVRGVIADGEEASADIIVTGLR 96

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISC 116
                + A A+I+ ++SPGGS      ++  I ++K  ++KPV   + ++ AS  Y ++ 
Sbjct: 97  NAFEAEGAQAVILRINSPGGSPVQSGYVYDEIMRLKELHQKPVYAVISDLGASGAYYMAA 156

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
           A++ I A + SLVGSIGV+         +DKLGV  +   +   KA   PFS ++ K  Q
Sbjct: 157 AADEIYADKASLVGSIGVVGSGFGFVDAMDKLGVERRLFTAGEHKAFLDPFSPLDKKEEQ 216

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
             + V+ +++  F+  V + R         L  G +WTG +A  +GL+D +G    V + 
Sbjct: 217 FWEQVLSTTHDQFIEQVKKGRGDRLVDNDKLFSGLVWTGEQALGLGLVDGLGSSSYVARE 276

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           L           I D+ P    +   +        +   I  M      G 
Sbjct: 277 LVG------AEDIVDFTPQPTPFEALVGRFGTQ--IGKGIASMMGLNGMGF 319


>gi|167761166|ref|ZP_02433293.1| hypothetical protein CLOSCI_03571 [Clostridium scindens ATCC 35704]
 gi|167660832|gb|EDS04962.1| hypothetical protein CLOSCI_03571 [Clostridium scindens ATCC 35704]
          Length = 325

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 120/252 (47%), Gaps = 20/252 (7%)

Query: 35  SPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSA 80
           S ++A + + G I++               Q  +E I+ +  D +   +++ + SPGG+ 
Sbjct: 53  SDYIAIVRVEGTIQEQASTGIFDIPEGYQHQTTMEYIDDLMEDSNNKGILLYVDSPGGTV 112

Query: 81  YAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           Y  E ++  ++  K    +PV   +   AAS GY++S AS+ I A   ++ GSIGV+   
Sbjct: 113 YESEELYLKLKDYKEATGRPVWDYMAHYAASGGYMVSMASDKIYANSNTVTGSIGVIMSG 172

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             +    +KLG+   S+ S   K      S++  + + + Q+ VD  Y+ FV +V+E R 
Sbjct: 173 FDMTGLYEKLGIRYFSITSGEYKDS----SQMTDEQMAIYQEQVDEYYNKFVSIVAEGRG 228

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           +  +    L+DGR +T  +A   GLID +   E++  ++       +  +++  +     
Sbjct: 229 MSEEAVRGLADGRTYTAEQAIDNGLIDSISSFEDMQAAMSEELGVNNYYELEGPSGVFAS 288

Query: 259 WFCDLKNLSISS 270
            F  +K+L   S
Sbjct: 289 LFAQVKDLIPKS 300


>gi|305663247|ref|YP_003859535.1| signal peptide peptidase SppA, 36K type [Ignisphaera aggregans DSM
           17230]
 gi|304377816|gb|ADM27655.1| signal peptide peptidase SppA, 36K type [Ignisphaera aggregans DSM
           17230]
          Length = 319

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 125/289 (43%), Gaps = 16/289 (5%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-----------EDSQELIERIERISRDD 64
             + L ++  S  S     +P++A I + G I              + + E + +I  D 
Sbjct: 16  LTIALQLLIPSPLSIFTPPTPYIALIELHGTIDYEQPLFSGSTITPKTVSELVNKILSDP 75

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
            A A++V ++SPGG+      I+  ++K+ + K VI  +  +AAS GYLI+  +  I+A 
Sbjct: 76  YAKAVVVVVNSPGGTMA-AFEIYSILKKLSSEKIVIVYITNIAASGGYLIALPAREIIAN 134

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
            ++ +GS+G +     V   L KLG+++  VKS  +K   S + E     ++ ++ +VDS
Sbjct: 135 PSATIGSVGAIATIINVHNLLQKLGINVTIVKSGELKDVGSMYRETTETDIETIKSLVDS 194

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
             + F+  V E R         +    ++   EAK++GLID +G  +        L    
Sbjct: 195 IANEFIEKVIECRGNKIKNISEIRRAGVYPAREAKELGLIDDIGDLDYAINRARQLAGLP 254

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
               IK   P K      +       +     P  +  +   +  +W P
Sbjct: 255 PTTPIKRIEPTKPSLLDIILG----RVETQVTPTPRTPRSIEILLIWPP 299


>gi|322371200|ref|ZP_08045752.1| signal peptide peptidase SppA, 36K type [Haladaptatus
           paucihalophilus DX253]
 gi|320549190|gb|EFW90852.1| signal peptide peptidase SppA, 36K type [Haladaptatus
           paucihalophilus DX253]
          Length = 341

 Score =  122 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 124/271 (45%), Gaps = 26/271 (9%)

Query: 38  VARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           VA +A+ G I               + +++ +I+R + D++A  L++ L++PGG     E
Sbjct: 74  VAEVAVEGPIRRDGGGSIPSPAGTSTDDIVTQIDRANDDENANGLLLRLNTPGGEVVPSE 133

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            I  A ++     P +    ++ AS GY I+   + + A E SLVGSIGV+         
Sbjct: 134 DIRLAAERF--DGPTVAYATDVCASGGYWIASGCDELFAREASLVGSIGVIGSRVNAAEL 191

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
            +++G+S + + +   K    P  E++      +Q ++D  Y  FV  V+  R++  +  
Sbjct: 192 AERVGLSYERLAAGKYKDAGIPLKELDGDERDYLQGIIDGMYDDFVERVTTGRDLDPETV 251

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD-- 262
              ++ R++ G +A+++GL+D +G +E+V   L        +  ++++ P +        
Sbjct: 252 RE-TEARVYLGDDAERIGLVDELGTREDVEARLAERLGVPEV-SVREFEPSQPLRRRLNL 309

Query: 263 -------LKNLSISSLLEDTIPLMKQTKVQG 286
                       I+S++ D    ++  + + 
Sbjct: 310 GARGIAYSFGAGIASVVGDEKGDVEGFEFRA 340


>gi|45602163|gb|AAS71641.1| PfaP [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 242

 Score =  122 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 117/217 (53%), Gaps = 2/217 (0%)

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
           ++++  I ++ +   +++ ++SPGG+  A + ++  + +++  + ++  + +MAAS GY 
Sbjct: 1   MQKLRDIEQNPNIKGILIEINSPGGTVGASQEVYNELMRLRKTRKIVVSMKDMAASGGYY 60

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           I+ A++ I A   ++ GSIGV+   P +K  LD+ GV +++ K    K   S F +  P+
Sbjct: 61  IASAADKIFALSGTITGSIGVIAMAPNIKGLLDRYGVKMRTYKEGKYKDSLSLFRDSTPE 120

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
             +M+Q ++  +Y+ F++ V++ RN        L++G+I++G +A +  L+D +GG++E 
Sbjct: 121 EDEMIQKMLSDTYNEFIQDVAKGRNQTVKSVQNLAEGKIYSGQDAFRNKLVDEIGGRKEA 180

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270
            + L  L        +  +   ++ +      L    
Sbjct: 181 LEELSRLCQYDGEIPL--YEEDESPFDRLFMMLGSKM 215


>gi|332306361|ref|YP_004434212.1| signal peptide peptidase SppA, 67K type [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173690|gb|AEE22944.1| signal peptide peptidase SppA, 67K type [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 619

 Score =  122 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 66/286 (23%), Positives = 126/286 (44%), Gaps = 12/286 (4%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDS 65
           ++      +      H++ N   V  +  +G I                  + +   DDS
Sbjct: 308 ITFKHYLQIVNPPLPHLDTNVDKVGVVVAKGTILNGDQKPGTVGGDSTANLLRKARLDDS 367

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAA 124
             ++++ + SPGGSA+A E I + I+ +K   KPV+  +   AAS GY IS +++ I AA
Sbjct: 368 IKSVVLYVDSPGGSAFASEIIRQEIENLKAAGKPVVALMSTYAASGGYWISASADEIWAA 427

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
            +++ GSIG+   +   +  LD LGV    V ++           ++PK  Q++Q  ++ 
Sbjct: 428 PSTITGSIGIFGMFVSFENTLDYLGVHTDGVGTTDFAG-MGITRGIDPKMGQVLQRSIEH 486

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            Y  F+ LV++ R++  +    ++ GR+W G  A  + L+D +G  ++   +   L    
Sbjct: 487 GYDQFISLVADERHMSKEDVDSIAQGRVWIGETALSLNLVDHLGYIDDAVSAAAQLADLS 546

Query: 245 S-IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                  + +   +  F      + S +L  T      +K+  L +
Sbjct: 547 EYDVTYVERSLNSSELFWKEFFSNASVMLAKTQFAQSDSKLMSLIS 592



 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 97/285 (34%), Gaps = 37/285 (12%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------- 50
           + F  K       ++  + +  + F  +  +         + +RG I             
Sbjct: 19  LNFSRKLFFNIIFLVIAIAIISLIFKDNGQIGVKQDSALVLNLRGDIVIQKHAIDPFEAF 78

Query: 51  ----------------QELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93
                           Q+++  ++   +D    AL++ L    G      E I +AI   
Sbjct: 79  MQEALGQENEKPEVLLQDILLTLDNAKQDQRIKALVLDLQELNGAGLDKLEQIAQAIDDF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K  +  +  + +      Y I+  ++ +       +   G      Y K  LDK+  +  
Sbjct: 139 KLSEKPVYAIGDYYTQEQYYIASHADHVYMNPMGWMLFEGYGRFGMYYKSALDKIKATTH 198

Query: 154 SVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             K    K+   P    +++  A +  +  +++ +  +   V+E+R +  D      D  
Sbjct: 199 VFKVGTYKSAVEPLIRDDMSQAAKEANKAWLNAMWSQYKNNVAEARGLSADNFDEKVDEF 258

Query: 212 IW--------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           +             A + G +D +  +E+V Q L ++  ++  ++
Sbjct: 259 MVKFEDVNGDFAQYALENGWVDGLKTREQVLQELASVVGEEDSKR 303


>gi|14520806|ref|NP_126281.1| putative protease [Pyrococcus abyssi GE5]
 gi|5458022|emb|CAB49512.1| Putative protease [Pyrococcus abyssi GE5]
          Length = 335

 Score =  122 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 56/232 (24%), Positives = 112/232 (48%), Gaps = 3/232 (1%)

Query: 21  TVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGG 78
            +     S +V   +  +A + I G I+ S    +I+ I  I  +D+   +++ + SPGG
Sbjct: 74  FLRSLLESENVTTANATIAVLPIIGPIDSSSALGIIKAIREIRGNDTIKGVLLWIESPGG 133

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
                  I+  ++K+   KP++  V   A S  Y I+CA+  I+A   S VGSIGV++ +
Sbjct: 134 YVGPVREIYNELKKLGYLKPIVAYVSGYAYSGAYYIACAAREIIAEPLSEVGSIGVIYVH 193

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              + +    G+ ++  K+ P K   + +  + P+   ++++ + + ++ F+ +VSE RN
Sbjct: 194 FNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTYFNDFLEVVSEGRN 253

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
           +  ++T   + GR W   +     L+D +G  +   + L  L   +    I 
Sbjct: 254 MTINETKKFATGRAWFAKD-VNGTLVDKLGDFDVALKELLKLIGAKKANVII 304


>gi|254527035|ref|ZP_05139087.1| signal peptide peptidase SppA, 36K type [Prochlorococcus marinus
           str. MIT 9202]
 gi|221538459|gb|EEE40912.1| signal peptide peptidase SppA, 36K type [Prochlorococcus marinus
           str. MIT 9202]
          Length = 269

 Score =  122 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 73/264 (27%), Positives = 132/264 (50%), Gaps = 5/264 (1%)

Query: 33  DNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            +   +ARI I   I  S    +++ +++I  D    ALIV + SPGG+    + I+ AI
Sbjct: 8   KSKKRMARIVIDEPITSSTRVSVLKALKQI-EDREFPALIVRIDSPGGTVGDSQEIYSAI 66

Query: 91  QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           +++K++   VI     ++AS G  I  AS+ IVA   ++ GSIGV+ +   +   LDK+G
Sbjct: 67  KRLKDKGCKVIASFGNISASGGVYIGVASDKIVANPGTITGSIGVIIRGNNLSELLDKIG 126

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +  ++VKS   K   SP   ++ +   ++Q ++D SY  F   V+E RN+P +     +D
Sbjct: 127 IKFETVKSGVFKDILSPDKPLSEEGRDLLQGLIDESYKQFTEAVAEGRNLPVEDVRKFAD 186

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           GRI+TG +AK +GL+D +G +    +    +       +   +   K      +    + 
Sbjct: 187 GRIFTGTQAKDLGLVDEIGDEFVARELAAKIVNIDPKIQPLTFGKKKKKILGLIPGSRMI 246

Query: 270 SLLEDTIPLMKQTKVQGLWAVWNP 293
             + ++I     +  + LW ++ P
Sbjct: 247 EKVINSIFFEFDSSNKVLW-LYKP 269


>gi|281209653|gb|EFA83821.1| hypothetical protein PPL_02889 [Polysphondylium pallidum PN500]
          Length = 848

 Score =  122 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 66/276 (23%), Positives = 115/276 (41%), Gaps = 22/276 (7%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--------------EDSQELIERIERI 60
           + L     +    ++        +A I   G I                ++ L   I   
Sbjct: 497 IFLTKYLSLTGRLNAPGNSKKNRIAYINAEGAISCGKSLTKMNGGPTIGAESLSLAIRAA 556

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASN 119
             D +  A+I+ + SPGGS  A   +   I++ K   K VI  +  +AAS GY ISC ++
Sbjct: 557 VLDKTIKAIIIRVDSPGGSYQASCIVHFEIERAKKAGKKVIALMGSVAASGGYFISCNAD 616

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS-------SPMKAEPSPFSEVNP 172
            IVA   ++ GSIGVL     ++  L+K+GVS  ++K               S     + 
Sbjct: 617 KIVAQHGTITGSIGVLLGKLNIRKPLEKIGVSFDNLKINERDDTVGDNSNLFSSLYNYSE 676

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
             +  +   +D  Y  F   V++ RN+  ++   ++ GR+W+G +A +  L+D +GG  E
Sbjct: 677 AQLNTLNHELDEIYGDFKSKVAQGRNLSMEQVEEVARGRVWSGQQAFERKLVDRIGGLNE 736

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
             +    L       K++    P++     L + S 
Sbjct: 737 AIEETKELLKLGKDDKVELIPFPRDNLIKQLLSSSA 772



 Score = 88.9 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 84/197 (42%), Gaps = 8/197 (4%)

Query: 51  QELIERIERISRDDSATALIVSLSS-PGGSAYAGEAIFRAIQKVKNRKPVITEV-----H 104
           +++++ I + + D   T LI  + +    S    + I  A++ ++++             
Sbjct: 278 RDIVDGIRKAADDPKVTGLIFRIGTHFAMSFAHIQEIRDAVRYMRSKGKKTLFYADSFGE 337

Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164
              A+  Y ++ A   I  +    +  +      P++K  L+KL +  + ++    K+  
Sbjct: 338 FSNANITYYLASAFETIYMSPVGSLCIVNWGIDAPFIKKTLEKLEIVPEFLRRREFKSAA 397

Query: 165 SPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVG 222
           + F+E  + P   + MQ ++DS ++     +++ RN+  D          +T A+A+ + 
Sbjct: 398 NMFTEEKMTPSERESMQSILDSLFNQMTEGIAQDRNLLVDDVSRYFASGPFTAAKAESLK 457

Query: 223 LIDVVGGQEEVWQSLYA 239
           LID +    + +  +  
Sbjct: 458 LIDKLAYLPDAYDEIKG 474


>gi|262274575|ref|ZP_06052386.1| protease IV [Grimontia hollisae CIP 101886]
 gi|262221138|gb|EEY72452.1| protease IV [Grimontia hollisae CIP 101886]
          Length = 618

 Score =  122 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 60/241 (24%), Positives = 110/241 (45%), Gaps = 11/241 (4%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSA 66
           S   +++  ++        +  +A +   G I D                +     +D+ 
Sbjct: 305 SFNYVSIYDYAPLDFDYPKANQIAVVVASGAIIDGFETEGTIGGDTTAALLRDARLNDAI 364

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAE 125
            A+++ + SPGGSA+A E I   +  +K   KPV+  +  +AAS GY IS ++N I+A  
Sbjct: 365 KAVVLRVDSPGGSAFASEVIRNEVDALKKAGKPVVVSMSSVAASGGYWISSSANRILAQP 424

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
           T++ GSIG+       +  L K GV    + ++P          +  +   +MQ  +++ 
Sbjct: 425 TTITGSIGIFGILTTFEDVLAKYGVYNDGIGTTPFAGVGVT-RALPDEISDIMQLGIENG 483

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  F+ LV+  RN+  +    ++ GR+WTG +A K GL+D +G  ++       L   + 
Sbjct: 484 YQRFIGLVASERNLSLEDVDQVAQGRVWTGYDAMKRGLVDQMGDFDDAIAVAAELAKVEE 543

Query: 246 I 246
            
Sbjct: 544 Y 544



 Score = 88.1 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 101/298 (33%), Gaps = 44/298 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQIEDSQ------ 51
           + F  + I     +  LV +  V+ +                 + I G I + +      
Sbjct: 19  LSFARQLILNILFIAILVGIYFVFTTEHETQTKPIEQPEQALLVDIAGPIVEKRRRIDPY 78

Query: 52  -------------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQ 91
                              +++++I   ++DD    +++S       S      I +AI 
Sbjct: 79  DFATRNLFGQQMHVENVLYDIVDQIRAGAKDDKINGMVLSLSDMSETSLTKLRYIAKAIN 138

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           + K     +  + +    + Y ++  ++ I  A    V   G      Y K  L+ L V+
Sbjct: 139 EFKATGKPVVAIGDHYNQSQYYLASYADEIFMAPDGAVLLRGYGSYNLYFKELLENLDVT 198

Query: 152 IKSVKSSPMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------ 203
               +    K+   P++  +++ +A +     ++  +  FV  V+ +RNI          
Sbjct: 199 THVFRVGTYKSFVEPYTRTDMSEEAREANSVWLNQLWAAFVDDVATNRNIDPAVLTPDAP 258

Query: 204 --TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ-----SIRKIKDWNP 254
                L +        A+ +GL+D +  +++    L  +         +   I D+ P
Sbjct: 259 SLIAKLKEAGGDFAKLAQNMGLVDELLTRQQTRLRLADMLGSDGQDSFNYVSIYDYAP 316


>gi|23015704|ref|ZP_00055473.1| COG0616: Periplasmic serine proteases (ClpP class)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 560

 Score =  122 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 119/272 (43%), Gaps = 17/272 (6%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQI--------------EDSQELIERIERISRDDSAT 67
           +  ++           +A I+  G I                +Q + E       DD   
Sbjct: 282 LADYAGHLDKARGGAKIALISGIGAIHRGESRHGLDGDGDFGAQTVAEAFRDAVDDDKVK 341

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAET 126
           A++  + SPGGS  A + +   + + +   KPV+  +   AAS GY ++  ++ I+AA  
Sbjct: 342 AILFRVDSPGGSYTASDTVHHEVARARAAGKPVVVSMGNYAASGGYFVAMGADRIIAAPG 401

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           ++ GSIGV      ++ F  KLG+S   ++        S      P+A   +  ++D  Y
Sbjct: 402 TITGSIGVFTGKVVLEDFWKKLGISWDQMQRGDNAGIWSANQPFTPQAKARIDALLDHIY 461

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
             F    S++RN+   +   L+ GR+WTGA+AK+ GL+D +GG  E    L  +   ++ 
Sbjct: 462 ADFTGKASQARNLDAARMDKLARGRVWTGADAKESGLVDGLGGWTEALAQLRQVAGLKAD 521

Query: 247 RK--IKDWNPPKNYWFCDLKNLSISSLLEDTI 276
               + ++  P+  W    ++L    + E  I
Sbjct: 522 EPLSLVEFPRPRKPWEVLAESLGGGGVAERRI 553



 Score = 77.3 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 84/206 (40%), Gaps = 7/206 (3%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
             ++ +E ++R + D   T L  ++          + +  A+ + +          E   
Sbjct: 74  GLRQTVEALDRAALDSRVTGLFATMGHSSLGLAGRQDLRDAVIRFRASGKSAVLFAETMG 133

Query: 109 SA-----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
                   Y ++ A + +    +  VG  G+  + P++K  LD LG+  +       K+ 
Sbjct: 134 EGGSGTLDYYLAAAFSQVWLQPSGDVGLTGLWVESPFIKGTLDLLGMKAQFSGRHEYKSA 193

Query: 164 PSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221
              F+E    P   + +  ++DS     +  ++ +R +P D+   L     +  +EA   
Sbjct: 194 IDMFTETGFTPAHRENLGRLLDSWSEQIISGIAANRGLPEDRVRDLMGKGPFLASEALNA 253

Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIR 247
            L+D VG +++ W+ +  +G D++  
Sbjct: 254 KLVDKVGYRDQAWEIVAGIGTDKAED 279


>gi|257466515|ref|ZP_05630826.1| protease IV [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917670|ref|ZP_07913910.1| protease IV [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691545|gb|EFS28380.1| protease IV [Fusobacterium gonidiaformans ATCC 25563]
          Length = 564

 Score =  122 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 66/268 (24%), Positives = 121/268 (45%), Gaps = 9/268 (3%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPG 77
           +     YFS          ++A + + G IED    ++ ++ I +D +   +I+ ++SPG
Sbjct: 284 IISIQEYFSLVKMKTRPKNYLALLNLEGTIEDETLFLDEVKAIQKDQNVKGVILRINSPG 343

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           GSA   + ++ A++K++ + PV   +   AAS GY ++ A   I A+  S+ GSIGV+  
Sbjct: 344 GSALVADTMYHAVKKLREKIPVYVSISGTAASGGYYVAAAGEKIFASPLSVTGSIGVVSM 403

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
            P       K  V  +S+         S    ++ +    +++     Y  F+ +VS +R
Sbjct: 404 IPNFSNLEKKANVVTESISKGKYADLYSYLQPLSEENYNRIREGNLGVYQDFLEVVSSNR 463

Query: 198 NIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK------ 250
           NI  D     L+ GR+W G EAK+ GLID +GG E    +L       ++  ++      
Sbjct: 464 NIKKDFLDKNLAQGRVWLGIEAKENGLIDELGGLEATIYALEQDKKLGTLPILQVSKNDV 523

Query: 251 --DWNPPKNYWFCDLKNLSISSLLEDTI 276
              +      +   L +     + +D +
Sbjct: 524 FGQYLGKYRKFLSVLPSSMQQKVPKDRL 551



 Score = 58.1 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 104/278 (37%), Gaps = 35/278 (12%)

Query: 6   KKIKTRYV--MLSLVTLTVVYFSWSSHVED----------------NSPHVARIAIRGQI 47
           ++I + ++  +LSL+ L +V  ++ S++                  +SP    I I   +
Sbjct: 17  REICSFFIKLVLSLILLAIVVGTFISYISKENTTEIKQGSYVLLRASSPLSEHIPIPDPL 76

Query: 48  EDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
              +      E++  ++ I +D     +++       +    E I   +QK++     + 
Sbjct: 77  SLQEKHMTFFEVLYALDSIRQDQRIQGVLLDADFLSWNKAQLEEIGNKLQKLEKEGKKVI 136

Query: 102 EVHEMAASAGYLISCASNIIVAA--ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
              +      Y ++  +  IV      +        ++  Y K  LD+ GVSI  +    
Sbjct: 137 TTLQEVNRNNYFLASYTKEIVMTPIHAASSNISPYHYEELYWKNLLDRFGVSINVIPIGD 196

Query: 160 MKAEP--SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA- 216
            K+       S+++ +  + M  ++D SY + +  ++ +R +  +      +   + G  
Sbjct: 197 YKSYMENYSHSQMSKEFRENMTRILDKSYDYSIEAIANNRKLEKNTLKAWIENGEFMGTS 256

Query: 217 --EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
                + GLI     + E    +     D  I  I+++
Sbjct: 257 FPTLFEKGLI----TKGEYPNRIRDEIGDDKIISIQEY 290


>gi|121998030|ref|YP_001002817.1| peptidase S49 [Halorhodospira halophila SL1]
 gi|121589435|gb|ABM62015.1| peptidase S49 [Halorhodospira halophila SL1]
          Length = 316

 Score =  122 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 112/247 (45%), Gaps = 18/247 (7%)

Query: 35  SPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
            PH A + I G I        +++I  +ER    D A  +++ ++SPGGSA     I++ 
Sbjct: 59  GPHTAEVRIDGPIMSDSAASAEQVIRGLERAFEADDAAGVVLRINSPGGSAVHARQIYQE 118

Query: 90  IQKVKNRKPVI---TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
           I++++     I     + ++  S  Y ++ A++ I   E+S+VGSIGV+     +   L+
Sbjct: 119 IRRLREEYEDIPVHAVIEDIGTSGAYYVAAAADQIHVNESSIVGSIGVIMGSFGIGEALE 178

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD---- 202
           KLG+  +   +   KA   PF+  +   V+ ++ ++D  +  F+  V + R    D    
Sbjct: 179 KLGIERRVYTAGDDKAFLDPFAPEDEAHVEHVRTMLDDIHGQFIAAVRDGRGEQIDAAGA 238

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               L  G IWTG ++   GL D +G    V + +          ++ D+   +++    
Sbjct: 239 DEDRLFSGLIWTGQQSLDKGLADEIGSVRSVARDVIG------EEELVDYTARRDFLSQL 292

Query: 263 LKNLSIS 269
            +    +
Sbjct: 293 AERFGTA 299


>gi|241667507|ref|ZP_04755085.1| S49 family peptidase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254876053|ref|ZP_05248763.1| peptidase [Francisella philomiragia subsp. philomiragia ATCC 25015]
 gi|254842074|gb|EET20488.1| peptidase [Francisella philomiragia subsp. philomiragia ATCC 25015]
          Length = 307

 Score =  122 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 56/282 (19%), Positives = 121/282 (42%), Gaps = 19/282 (6%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP---HVARIAIRGQIEDS-----QE 52
           ++ +  K + ++   S++ L V+     S    +     H+  + + G I +      + 
Sbjct: 18  LKDIKSKRRWKFFTRSIIILIVLVIIIPSLFSSSKELTSHIGLVKVDGVIVEDAEANAER 77

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAAS 109
           + + ++    + +   +I+ ++SPGGS    + I+  ++ ++ +    P+      + AS
Sbjct: 78  INKSLDDAYSNKAVKGIIIEINSPGGSPVQSDEIYSHMRYLQQKYPNIPMYAVCTNVCAS 137

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
            GY I+  +  I A + ++VGSIGV+         +DKLG+  ++  S   K    PFS 
Sbjct: 138 GGYYIAAGAKEIYANKMTIVGSIGVIGSGFGFTGLMDKLGIERRTYTSGSNKDFLDPFSP 197

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLIDVV 227
             P+       ++D ++  F+  V +SR              G  ++G +A+++GLID  
Sbjct: 198 ERPEQTAQFNKLLDETHQVFITAVEQSRGDRLKDKAMDTTFSGEPFSGIQAQRMGLIDGF 257

Query: 228 GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
               ++ +  +      +   I D+  P ++       L  S
Sbjct: 258 ASVNQLKRDKF------NNLDIVDYTQPLDFLTAVSNKLGNS 293


>gi|325266561|ref|ZP_08133238.1| signal peptide peptidase SppA [Kingella denitrificans ATCC 33394]
 gi|324982004|gb|EGC17639.1| signal peptide peptidase SppA [Kingella denitrificans ATCC 33394]
          Length = 336

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/278 (24%), Positives = 115/278 (41%), Gaps = 26/278 (9%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDN---------SPHVARIAIRGQIEDSQEL--I 54
           + I     +L  +          +   +           PH A I + G I     +  +
Sbjct: 45  RNIWRFVALLVFIAFIAGLRDSGTQESEQAAFSAAAARGPHTAVIDLNGTIGGDNRISQV 104

Query: 55  ERIER----ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK---PVITEVHEMA 107
           + + +      R+ +  A+I+  +SPGGS       F  I+++K      PV     +M 
Sbjct: 105 DMLRQGMEAAYRNKNVRAIIIHANSPGGSPVVSNTAFSEIRRIKAEHANIPVYVVAKDMC 164

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           AS  Y I+ A++ I A  +SLVGSIGV+         ++KLG+  +   +   K    PF
Sbjct: 165 ASGCYYIAAAADKIFADPSSLVGSIGVIGSSFDATGLIEKLGIRRRVRIAGDNKGMGDPF 224

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY--DKTLVLSDGRIWTGAEAKKVGLID 225
               P+   + Q++++  +  F++ V E R       +   +  GRI+TG +AKK GLID
Sbjct: 225 VPETPEQQAIWQNMLNQIHGEFIKAVREGRGKRLMEKEFPDMFSGRIFTGIDAKKAGLID 284

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
             G    V + +           + ++ P KN     L
Sbjct: 285 DFGNVYSVARDVVK------APNLVNYTPEKNDLASLL 316


>gi|260913982|ref|ZP_05920456.1| signal peptide peptidase SppA [Pasteurella dagmatis ATCC 43325]
 gi|260632069|gb|EEX50246.1| signal peptide peptidase SppA [Pasteurella dagmatis ATCC 43325]
          Length = 626

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 70/252 (27%), Positives = 122/252 (48%), Gaps = 18/252 (7%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAY 81
              +   +A + + G I D +          +   + +   D+S  A+++ ++SPGGSA+
Sbjct: 322 TSSDKHKIAVVNVEGAIIDGESFEDDVGGDTIARLLRQAKDDESVKAVVLRVNSPGGSAF 381

Query: 82  AGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           A E I + +  ++   KPVI  +  MAAS GY IS  ++ IVA + ++ GSIG+    P 
Sbjct: 382 ASEIIRQEVTHLQKAGKPVIVSMGGMAASGGYWISSTADYIVADKNTITGSIGIFAVLPS 441

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
            +  + K GVS   V +SP+ +E S FS ++ +   + Q  ++  Y  F+ LV+E R + 
Sbjct: 442 FEKTIKKAGVSADGVSTSPL-SELSLFSPLSNELNDVFQLEIEHGYDKFISLVAEGRALD 500

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDWN----- 253
                 ++ G+IW G EA K  L+D +G  ++          D  +   +IKD+      
Sbjct: 501 KADVEKVAQGKIWLGQEALKHNLVDQIGTFDDAVDIAIISVNDLLEPDERIKDFGIEWMV 560

Query: 254 PPKNYWFCDLKN 265
              + W+  L  
Sbjct: 561 EKDSSWWNMLIG 572



 Score = 70.0 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 90/246 (36%), Gaps = 12/246 (4%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASA 110
           +++  I    +D+    L+  L+   G      E I RAI   K  K  +    +     
Sbjct: 97  DVVYAITNAEKDERIKGLVFDLNFFEGGDLPALEYIGRAISDFKRSKKPVIVFADNYNQK 156

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FS 168
            YL++  ++ I       V  +G+  Q  Y K  L+ L V+    +    K+   P    
Sbjct: 157 QYLLASYADQIYLNPVGKVSILGMKQQNLYFKSMLNMLDVTTNVFRVGTYKSAVEPLLRD 216

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY--------DKTLVLSDGRIWTGAEAKK 220
           +++  A + M+  ++  +  +V +V+++R I               L   +  + A  K+
Sbjct: 217 DMSEAAKEDMKSWLNQMWTNYVSIVADNRQIEPRAVLPDAKTYVEELRVLKGDSSAYTKQ 276

Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            GLI     +  V   L  +     + ++K       Y       ++ S   +  +  ++
Sbjct: 277 RGLITEFADRLTVEDKLIEIFGQTELGELK-MVEFDRYLADLPDRMTSSDKHKIAVVNVE 335

Query: 281 QTKVQG 286
              + G
Sbjct: 336 GAIIDG 341


>gi|261364052|ref|ZP_05976935.1| signal peptide peptidase SppA [Neisseria mucosa ATCC 25996]
 gi|288568087|gb|EFC89647.1| signal peptide peptidase SppA [Neisseria mucosa ATCC 25996]
          Length = 324

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/285 (21%), Positives = 116/285 (40%), Gaps = 15/285 (5%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVE-----DNSPHVARIAIRGQIEDS-QELIERIE- 58
           +  +  + ++ ++ +  ++F                H A I + G+I     + ++ +  
Sbjct: 39  RFWRNFWRIIGVLLIAALWFGSDDGTAGQGLAAGKEHTAVITLEGEIGGGIDDQVKMLRD 98

Query: 59  ---RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGY 112
                  + +A  +++  +SPGGS       F  I+++       PV     +M AS  Y
Sbjct: 99  SMEAAYSNPNAKGIVIRANSPGGSPVISNTAFNEIRRLKGEHKDIPVYVVAEDMCASGCY 158

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            I+ A++ I A  +S+VGSIGV+     V   +DKLG+  +   +   K    PF+   P
Sbjct: 159 YIAAAADKIYADPSSIVGSIGVIGGGFDVTGLMDKLGIKRRLKTAGSNKGMGDPFTPETP 218

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQ 230
           +  ++ + ++  ++  F++ V   R           +  GR++TG EAKKVGLID  G  
Sbjct: 219 EQAKIWEAMLSDTHQEFIKAVKLGRGEKLKDKEYPDVFSGRVYTGLEAKKVGLIDDFGSV 278

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
             + + +       S     D+       F       +   L   
Sbjct: 279 YSIARDVVKAPELVSYTPEDDFGKFVRRHFGAQVKAEVEKTLSKM 323


>gi|123968906|ref|YP_001009764.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus str. AS9601]
 gi|123199016|gb|ABM70657.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus str. AS9601]
          Length = 269

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/264 (27%), Positives = 131/264 (49%), Gaps = 5/264 (1%)

Query: 33  DNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            +   +ARI I   I  S     ++ ++++  D    ALIV + SPGG+    + I+ AI
Sbjct: 8   KSKKRMARIVIDEPITSSTRVSFLKALKQV-EDREFPALIVRIDSPGGTVGDSQEIYSAI 66

Query: 91  QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           +++K++   VI     ++AS G  I  AS+ IVA   ++ GSIGV+ +   +   LDK+G
Sbjct: 67  KRLKDKGCKVIASFGNISASGGVYIGVASDKIVANPGTITGSIGVIIRGNNLSELLDKIG 126

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +  ++VKS   K   SP   ++ +   ++Q ++D SY  F   V+E RN+P ++    +D
Sbjct: 127 IKFETVKSGVFKDILSPDKPLSEEGRGLLQGLIDESYKQFTEAVAEGRNLPVEEVRKFAD 186

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           GRI+TG +AK++GL+D +G +    +    +       +   +   K      +    + 
Sbjct: 187 GRIFTGTQAKELGLVDKIGDEFVARELAAEMVNIDPKIQPLTFGKKKKKILGLIPGSRVI 246

Query: 270 SLLEDTIPLMKQTKVQGLWAVWNP 293
             +   I     +  + LW ++ P
Sbjct: 247 EKIIKNIFFEFDSSNKVLW-LYKP 269


>gi|328948927|ref|YP_004366264.1| signal peptide peptidase SppA, 36K type [Treponema succinifaciens
           DSM 2489]
 gi|328449251|gb|AEB14967.1| signal peptide peptidase SppA, 36K type [Treponema succinifaciens
           DSM 2489]
          Length = 343

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/264 (24%), Positives = 134/264 (50%), Gaps = 9/264 (3%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDSQE------LIERIERISRDDSATALIVSLSSPG 77
                 +    + ++A++ I+G I +S +      ++  IE +  D +   +++ ++SPG
Sbjct: 60  LLGKKENKFPKNEYIAKLFIKGVISESNDSYNQEWILSTIENLQEDTNNRGIVLVINSPG 119

Query: 78  GSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           G  Y  + +F A++K K +  +PV      +AAS GY + CA++ I+A   SL GSIGV+
Sbjct: 120 GGVYQADEVFLALEKYKKKTERPVYAYFTSLAASGGYYVGCAADYIMANRNSLTGSIGVI 179

Query: 136 -FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
             Q+  +   ++K G+   ++ S   K   +    +  +  ++MQ + D  Y  F  +V+
Sbjct: 180 AGQFTDLTGLMEKWGIKSTTIHSGRNKLMGNFNEPMTQEQQEIMQSIADECYEQFTDIVA 239

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           ESR +  ++   L+DGRI+T ++AK+  LI+ +G  +E+ +++     D +  +  D++ 
Sbjct: 240 ESRGLSKEEVYKLADGRIYTASQAKEASLINSIGTLDELIETMQRKEFDFAEYETADFSY 299

Query: 255 PKNYWFCDLKNLSISSLLEDTIPL 278
            K      +   S     + ++ +
Sbjct: 300 QKEDSIYRMIMGSAKEFKKASLGI 323


>gi|108804065|ref|YP_644002.1| peptidase S49 [Rubrobacter xylanophilus DSM 9941]
 gi|108765308|gb|ABG04190.1| peptidase S49 [Rubrobacter xylanophilus DSM 9941]
          Length = 555

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 109/226 (48%), Gaps = 19/226 (8%)

Query: 37  HVARIAIRGQIE-------------------DSQELIERIERISRDDSATALIVSLSSPG 77
            V  +++ G I                     ++ +   +    RD    A+++ + S G
Sbjct: 282 KVGLVSVSGVIVRGRSRSLPAPIPFLGGEQAGAESVAAALRVAERDRRVAAVLLHVESRG 341

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G A A + I+R + +++  KPV+  +   AAS GY +  A++ IVA   +L GSIGV+  
Sbjct: 342 GDALASDLIWREVARLRRSKPVVVLMGNFAASGGYYVGVAADRIVARRNTLTGSIGVVLV 401

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
            P  K    +LG+  ++++     A   P ++  P  ++ ++  ++ +Y  F + V E R
Sbjct: 402 RPVAKELYGRLGLRPEALQRGKNAAILDPATDPGPGELEALRRQMEHAYREFRQRVVEGR 461

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
            IP ++   L+ GR+WTG EA++ GL+D  GG  E  +    LG  
Sbjct: 462 GIPQERLEGLAGGRVWTGEEARREGLVDATGGFREALRLAGELGGV 507



 Score = 68.9 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 86/188 (45%), Gaps = 3/188 (1%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMA 107
             +EL E ++ +  D   + +++ +        A E +   + + +     V++ + E A
Sbjct: 65  SLEELREALDAVLYDGRPSGVVLRVRRLDAGWAALEELRGELARFREAGGRVVSYLREDA 124

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP- 166
            S  Y ++CA++ + AA  + +G  G+  +  + +  L++ G+  + +  SP K+     
Sbjct: 125 DSRAYYLACAADEVFAAPLAALGITGLRTRVVFAREALERAGLRAEVLAVSPYKSAYDAL 184

Query: 167 -FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
             +  + +A +    ++D  +   V  VS +R +P +    L D       EA + GL+D
Sbjct: 185 ARAGFSREAREQALRLLDGRFSELVGAVSRARGMPEEAVRGLIDRAPLAAREALEAGLLD 244

Query: 226 VVGGQEEV 233
            V  ++E+
Sbjct: 245 GVCYEDEL 252


>gi|94496302|ref|ZP_01302879.1| signal peptide peptidase SppA, 67K type [Sphingomonas sp. SKA58]
 gi|94424048|gb|EAT09072.1| signal peptide peptidase SppA, 67K type [Sphingomonas sp. SKA58]
          Length = 617

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 123/287 (42%), Gaps = 14/287 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATA 68
                +     +    N+  +  + + G I D +          + + +       +  A
Sbjct: 283 FAAIDLRSYVKARAPANNGQIGVLTVAGDIVDGEAGPGTAAGDTISDLLLSALDKGNLKA 342

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETS 127
           L+V + SPGGS  A E I  AI + K    PV+  +  +AAS GY +S   ++I A   +
Sbjct: 343 LVVRVDSPGGSVMASEKIRSAIMQAKEDGLPVVVSMANVAASGGYWVSTPGDVIFAEPDT 402

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           + GSIGV    P  +  L K+G++   V+++P+  +P       P+  Q+MQ  V+  Y 
Sbjct: 403 ITGSIGVFGILPSFEGTLAKMGITTDGVRTTPLSGQPDLAGGTTPEFDQIMQLGVEDIYR 462

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            FV LV++SR    ++   ++ GR+W G  A+++GL+D  GG E+              +
Sbjct: 463 RFVGLVAQSRKKKPEQIDRIAQGRVWDGGTARQLGLVDRFGGLEDAIAEAARRAKIDPAK 522

Query: 248 ----KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
               +I+        W  +               L +Q  +Q  WA+
Sbjct: 523 ARAFRIEKQPDKWAEWLQEFAERESDDATAPRDMLARQAWLQRGWAL 569



 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 77/204 (37%), Gaps = 13/204 (6%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAAS 109
            +++  +E    D    A++++L    G        I  A+  V+  K  +     + + 
Sbjct: 73  SDIVTALEAAKGDAKVKAVVLNLDGFLGGGQVALGRIGAALDAVRAAKKPVLAYATLYSD 132

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y ++  ++ +       V  +G      Y K  +DKLGV+    +    K+   PF  
Sbjct: 133 DSYQLAAHASEVWTDPLGGVAIMGRGGSNLYYKGLIDKLGVNTHVYRVGTYKSFVEPFIR 192

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESR--------NIPYDKTLVLSDGRIWTGAEAK 219
           +E +P+A Q  Q + ++ +  +   V+++R                  ++G I     A 
Sbjct: 193 TEQSPEARQANQALAEALWQQWQDDVAKARPRARIAAYAGDPAAAARAANGDI--AKAAL 250

Query: 220 KVGLIDVVGGQEEVWQSLYALGVD 243
             GL+D +G        +  +  D
Sbjct: 251 SAGLVDKLGDATTFADHVADIAGD 274


>gi|317051372|ref|YP_004112488.1| signal peptide peptidase SppA, 36K type [Desulfurispirillum indicum
           S5]
 gi|316946456|gb|ADU65932.1| signal peptide peptidase SppA, 36K type [Desulfurispirillum indicum
           S5]
          Length = 277

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 114/266 (42%), Gaps = 3/266 (1%)

Query: 4   VLKKIKTRYVMLSLVTLT-VVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
           + K IK   ++L ++ +T  V  S     +   PH+  + + G + D   +   ++  +R
Sbjct: 1   MKKFIKWFLILLVIIFVTSAVISSMDRQKKLKEPHIGLVTLEGILYDIDFVSGALDDFAR 60

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           +   T ++V ++SPGG     + ++  I+     KPV      +AAS     +  ++ I 
Sbjct: 61  NPMITGVLVRVNSPGGVVTPSQELYSLIRHYP--KPVWAFHDGLAASGALFATIGADRIG 118

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
              T++ GSIGV+ +    +   +K+G+   +VK+ P K   S    +     +++++++
Sbjct: 119 TQSTTITGSIGVIIRSINARELYEKIGIEEITVKTGPFKNILSTNQPLGDDERRILEELI 178

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             SY  FV  ++ SR++     + ++DGRI++G  A + GL D +    E          
Sbjct: 179 GDSYDEFVNAIASSRDMDKQLLIDIADGRIFSGLRAVEYGLADEISSYHEFRNKFAQELQ 238

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSI 268
                               L  +  
Sbjct: 239 VHPDNYFVYQRSRGERLRELLSTVQA 264


>gi|56460437|ref|YP_155718.1| periplasmic serine protease [Idiomarina loihiensis L2TR]
 gi|56179447|gb|AAV82169.1| Periplasmic serine protease, ClpP family [Idiomarina loihiensis
           L2TR]
          Length = 616

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/274 (25%), Positives = 130/274 (47%), Gaps = 13/274 (4%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPG 77
             S    +   +A +  RGQI                + I     +    A+++ + SPG
Sbjct: 314 PESLQPTDRSQIAVVVARGQIVNGSQKAGMIGGDSTAKLIREARNNKQTKAIVLRIDSPG 373

Query: 78  GSAYAGEAIFRAI-QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GSA+A E I + I Q  +   PV+  +  +AAS GY I+  ++ IVAA T++ GSIGV  
Sbjct: 374 GSAFASEIIRQEILQAKEAGIPVVASMSTVAASGGYWIAADADKIVAAPTTITGSIGVFG 433

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
               ++  L  +GV   +V ++ ++   +P  E+     +++Q  V+++Y  F+ +VS++
Sbjct: 434 LLMTLEDSLAAIGVHSDTVSTTEIQGL-NPLEEMTEYQKKLVQSSVEATYEDFLTIVSKA 492

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI--RKIKDWNP 254
           RN+  D    ++ GRIWTG +A + GL+D +G  ++   +   L        + ++    
Sbjct: 493 RNMSRDDVHEVAQGRIWTGKQAMERGLVDQLGDFDDSVAAAAELAAIDDYDVKIVQQELS 552

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
            K  +F ++ N S   L   ++    Q  + G  
Sbjct: 553 SKEQFFANMFNSSSEYLPVPSVGGEAQHWLMGTL 586



 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 93/281 (33%), Gaps = 37/281 (13%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------- 51
            K I      L L    V  FS    +E     +  +   G + + +             
Sbjct: 16  RKVILNLVFFLILAVFLVSLFSGEDPIEVPENGILVLNPNGMLVEEKTWVDPFSQFLNEA 75

Query: 52  -------------ELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRK 97
                        ++++ IE+   D+   AL ++L +   S     +A+  A+   +   
Sbjct: 76  MGSSDDIPEVLLSDVVDSIEKAKTDERIGALYLNLQNLYPSGLNKLQAVAEALDDFRTSG 135

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I    +      Y ++  ++ +       V   G+ +   Y K  LDKL V  +  K 
Sbjct: 136 KPIISNADYYDQHQYYLAAHADQLYLNPMGGVVFEGLDYTQLYFKDLLDKLKVQPQVFKV 195

Query: 158 SPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY--------DKTLVL 207
              KA   PF  ++++ +A +  + +  + +  F   V+ +RNI          D     
Sbjct: 196 GKFKAAVEPFIRNDMSDEAREANEFLYSALWDSFRTDVTAARNINPLVTSGKVDDYMSAF 255

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           +         A +  ++D +  + EV   L  L        
Sbjct: 256 NSANGDMAKMALETNMVDALRTRTEVRNELINLAGYDKEED 296


>gi|310825614|ref|YP_003957972.1| Signal peptide peptidase SppA, 67K type [Stigmatella aurantiaca
           DW4/3-1]
 gi|309398686|gb|ADO76145.1| Signal peptide peptidase SppA, 67K type [Stigmatella aurantiaca
           DW4/3-1]
          Length = 598

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 70/311 (22%), Positives = 128/311 (41%), Gaps = 35/311 (11%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIE---------------DSQELIERIERISR 62
           +     Y   +    +    VA +   G I                 ++ +   + + S 
Sbjct: 274 LLFLDKYLDRTGGAREEGETVALVYGVGGIVRGKSESNPFGGEATFGAESVALALRKASE 333

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNII 121
           D    A++  + SPGGS  A + + R +Q+ + + KPVI  +   AAS GY +S  ++ I
Sbjct: 334 DKEVKAILFRVDSPGGSYVASDTVRREVQRAREKGKPVIVSMATYAASGGYFVSMGADKI 393

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
           VA   +L GSIGV         F  KLG++ +++         S  S+  P+        
Sbjct: 394 VAQPGTLTGSIGVYGGKMVTADFWAKLGINFETISLGKDATLYSTDSDFTPEQQAKNDAS 453

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           +D  Y  F +  +E R++P +K   ++ GR+WTG +AK++GL+D +GG  +  + +    
Sbjct: 454 LDRVYTDFTQKAAEGRHLPLEKLQAVARGRVWTGEDAKELGLVDELGGFPKALELVREAA 513

Query: 242 VDQSIRKIKDWNPPKNYWFCDLK---------------NLSISSLLEDTIPLMKQT---- 282
                 K+     P+     ++                  +  + L   IP ++QT    
Sbjct: 514 KLPKDAKVHLQVFPRKKQPAEVIADILGGGEGDNSEDEGGAQVAALSPLIPALEQTRQMY 573

Query: 283 KVQGLWAVWNP 293
           ++     +W P
Sbjct: 574 RLGARLGLWGP 584



 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 80/199 (40%), Gaps = 8/199 (4%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA--- 107
           ++++E +E+ ++D    +L+V +  P G     + +  A++  +          +     
Sbjct: 72  RDVVEALEKAAQDKRVKSLLVHIDQP-GGVAVAQELRDAVKAFRASGKKAVAFTDTFGEG 130

Query: 108 --ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
             A+  Y ++ A + I    +  V   G+  + P+ +    KLGV  +  +    K   +
Sbjct: 131 GSATGAYYLATAFDEIYIQPSGDVTLTGIAMETPFARDAFAKLGVQPRIGQRYEYKNAVN 190

Query: 166 PFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
            ++E        +  +  + S +   VR ++E R +  D+   L D     G  A +  L
Sbjct: 191 TYTEQGYTAAHREATEKFLGSLFGQLVRGIAEGRKLSEDEVKGLIDRAPLLGQAALEAKL 250

Query: 224 IDVVGGQEEVWQSLYALGV 242
           +D +  ++EV   +     
Sbjct: 251 VDGLLYRDEVLAKVKEEAG 269


>gi|115375108|ref|ZP_01462376.1| signal peptide peptidase SppA, 67K type [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367854|gb|EAU66821.1| signal peptide peptidase SppA, 67K type [Stigmatella aurantiaca
           DW4/3-1]
          Length = 587

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 70/311 (22%), Positives = 128/311 (41%), Gaps = 35/311 (11%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIE---------------DSQELIERIERISR 62
           +     Y   +    +    VA +   G I                 ++ +   + + S 
Sbjct: 263 LLFLDKYLDRTGGAREEGETVALVYGVGGIVRGKSESNPFGGEATFGAESVALALRKASE 322

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNII 121
           D    A++  + SPGGS  A + + R +Q+ + + KPVI  +   AAS GY +S  ++ I
Sbjct: 323 DKEVKAILFRVDSPGGSYVASDTVRREVQRAREKGKPVIVSMATYAASGGYFVSMGADKI 382

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
           VA   +L GSIGV         F  KLG++ +++         S  S+  P+        
Sbjct: 383 VAQPGTLTGSIGVYGGKMVTADFWAKLGINFETISLGKDATLYSTDSDFTPEQQAKNDAS 442

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           +D  Y  F +  +E R++P +K   ++ GR+WTG +AK++GL+D +GG  +  + +    
Sbjct: 443 LDRVYTDFTQKAAEGRHLPLEKLQAVARGRVWTGEDAKELGLVDELGGFPKALELVREAA 502

Query: 242 VDQSIRKIKDWNPPKNYWFCDLK---------------NLSISSLLEDTIPLMKQT---- 282
                 K+     P+     ++                  +  + L   IP ++QT    
Sbjct: 503 KLPKDAKVHLQVFPRKKQPAEVIADILGGGEGDNSEDEGGAQVAALSPLIPALEQTRQMY 562

Query: 283 KVQGLWAVWNP 293
           ++     +W P
Sbjct: 563 RLGARLGLWGP 573



 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 80/199 (40%), Gaps = 8/199 (4%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA--- 107
           ++++E +E+ ++D    +L+V +  P G     + +  A++  +          +     
Sbjct: 61  RDVVEALEKAAQDKRVKSLLVHIDQP-GGVAVAQELRDAVKAFRASGKKAVAFTDTFGEG 119

Query: 108 --ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
             A+  Y ++ A + I    +  V   G+  + P+ +    KLGV  +  +    K   +
Sbjct: 120 GSATGAYYLATAFDEIYIQPSGDVTLTGIAMETPFARDAFAKLGVQPRIGQRYEYKNAVN 179

Query: 166 PFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
            ++E        +  +  + S +   VR ++E R +  D+   L D     G  A +  L
Sbjct: 180 TYTEQGYTAAHREATEKFLGSLFGQLVRGIAEGRKLSEDEVKGLIDRAPLLGQAALEAKL 239

Query: 224 IDVVGGQEEVWQSLYALGV 242
           +D +  ++EV   +     
Sbjct: 240 VDGLLYRDEVLAKVKEEAG 258


>gi|116626894|ref|YP_829050.1| signal peptide peptidase SppA, 67K type [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116230056|gb|ABJ88765.1| signal peptide peptidase SppA, 67K type [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 573

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 119/266 (44%), Gaps = 15/266 (5%)

Query: 33  DNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSPGG 78
                VA +   G I                     + + R+  D    A+IV + SPGG
Sbjct: 287 QGKSQVALVVGAGDIVRGDANDDGSGESNLTSYGFNKILRRVGSDSQIKAVIVRIDSPGG 346

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
              A + I+R +  +  +KP++  + + AAS GY ++   + IVA   +  GSIGV+F  
Sbjct: 347 EVTASDEIWREMNLLAKKKPMVISMSDTAASGGYYMAMTGDPIVAYPATFTGSIGVVFGK 406

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P ++   +KLG+S  +++        S ++ + P+    ++  +D SY  FV  V+ +R+
Sbjct: 407 PNIRGLYEKLGISKDAIQRGKNADIDSDYTPLTPEQRAKLRAGIDESYQDFVTKVANARH 466

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN-PPKN 257
             +D+   ++ GR+W G++AK  GL+D  GG ++  + +       +  ++     P + 
Sbjct: 467 RTFDQIDQVAQGRVWLGSQAKPRGLVDETGGLDKAIELVKQKAKIPASERVTLMVFPGRR 526

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTK 283
                L   S   ++E  +  +    
Sbjct: 527 NILDILMKKSQEDMMEMKLAQVLGRM 552



 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 103/271 (38%), Gaps = 22/271 (8%)

Query: 1   MEFVLKKIK-TRYVMLSLVTLTVVYFSWSSHVED-NSPHVARIAIRGQ-----------I 47
           M+F++        V LS++ L VV   +        S  V  + + G+           I
Sbjct: 1   MKFLIGLATGVALVFLSIILLFVVALRFREKPPVIASDSVLVMRLEGELPEKTPVEIPAI 60

Query: 48  EDSQE-------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI 100
                       +   +++ + D    A+++            + +   I K K     +
Sbjct: 61  LGGDHTPATVVGVWSALDKAAADPHIRAVVLQPEGISAGWAKLQELRLDIDKFKKSGKPV 120

Query: 101 TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160
                   +  Y I+  ++ +    +  V   G+  +  Y K  LDKLGV+++   +   
Sbjct: 121 FAYLRQPGAREYFIASDADRVYLGPSDPVMLKGLRAEMMYFKKTLDKLGVNVEIEHAGKY 180

Query: 161 KAE--PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEA 218
           K        S+++P+  ++M  VVD  Y   V  ++ +R    ++   + D   +T ++A
Sbjct: 181 KDFGDMFTRSDMSPETREVMTSVVDDLYSDLVSGIATARKKTPEEVRAIIDQGPFTASQA 240

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
            K GL+D +  ++++W  L          K+
Sbjct: 241 LKAGLVDELRFEDQMWGELKERLKSGEPSKV 271


>gi|168008373|ref|XP_001756881.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691752|gb|EDQ78112.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 534

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 114/260 (43%), Gaps = 16/260 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED--------------SQELIERIERISRDDSATALIV 71
           S +  +   S  +A I   G I                S   IERI  +       A+I+
Sbjct: 274 SKTLGLAGGSNRIAIIRAAGNITRTASGRLGVSGEGIVSDSFIERIRFVREAKQFKAVII 333

Query: 72  SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
            + S GG A A + ++R I+ +  RKPVI  + ++AAS GY ++ A+ +++A   ++ GS
Sbjct: 334 RIDSGGGDALASDLMWREIKLLAERKPVIASMADVAASGGYYMAMAAGVVLAEPLTITGS 393

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IGV+     +    +++G + + +         +     +P+     ++   ++Y  F  
Sbjct: 394 IGVVTAKFNLATLYERVGFAKEIISRGKFAELDADQRPFSPEEENFFKESAMNAYTSFRN 453

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI-- 249
             +ESR++P +K   ++ GR+WTG  A   GL+D +GG  +              +++  
Sbjct: 454 KAAESRSMPIEKLEEVAQGRVWTGKAALDRGLVDTLGGISKAVAIAKQKAGIAEDQQVSL 513

Query: 250 KDWNPPKNYWFCDLKNLSIS 269
            + +  +      L   + +
Sbjct: 514 VELSRRQASPLSLLLGGASA 533



 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 91/246 (36%), Gaps = 13/246 (5%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVS 72
                         V  I + G+I +             ++ E + + + D     +++S
Sbjct: 23  MLFTLPWQRVKKGSVLTIKLSGEIAEQYQGRFMQGLSLPQICENLIKGAHDPRIEGVVLS 82

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           +          + I R ++  K     +     +     Y ++ A + + A   + +  +
Sbjct: 83  IEPLACGWGKLDEIRRHMEYYKQSGKFLVGYMPVGGEKEYYLASACSELYAPPGAYISLL 142

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           G+  Q  ++   L+K+GV  +  +    K+  +     +++    +M+  ++D  Y  F+
Sbjct: 143 GLKVQGQFLGGVLEKVGVQPQVQRIGKYKSAGDQLSRKDMSEANREMLTALLDDIYANFL 202

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
             VS ++    ++   L +  I+  ++ KK   I  +   +E+ + L      +  + ++
Sbjct: 203 EEVSRAKGKTKEEVEALFESGIYKVSDLKKDRWITDIKYADEIEEMLKERIKAKMDKPLQ 262

Query: 251 DWNPPK 256
                K
Sbjct: 263 TVQHRK 268


>gi|78779664|ref|YP_397776.1| signal peptide peptidase A [Prochlorococcus marinus str. MIT 9312]
 gi|78713163|gb|ABB50340.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Prochlorococcus marinus str. MIT 9312]
          Length = 269

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 124/239 (51%), Gaps = 4/239 (1%)

Query: 33  DNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            +   +ARI I   I  S    +++ +++I  D    ALIV + SPGG+    + I+ AI
Sbjct: 8   KSKKRMARILIDEPITSSTRVSVLKALKQI-EDREFPALIVRIDSPGGTVGDSQEIYSAI 66

Query: 91  QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           +++K++   VI     ++AS G  I  AS+ IVA   ++ GSIGV+ +   +   LDK+G
Sbjct: 67  KRLKDKGCKVIASFGNISASGGVYIGVASDKIVANPGTITGSIGVIIRGNNLSELLDKVG 126

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +  ++VKS   K   SP   ++ +  +++Q ++D SY  F   V+E RN+P ++    SD
Sbjct: 127 IKFETVKSGVFKDILSPDKPLSEEGRRLLQGLIDESYKQFTEAVAEGRNLPVEEVRKFSD 186

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
           GRI+TG +AK++GL+D +G +    +    +       +   +   K      +    +
Sbjct: 187 GRIFTGTQAKELGLVDEIGDEFVAREVAAKMVNIDPKLQPLTFGKKKKKILGLIPGSKV 245


>gi|254513823|ref|ZP_05125884.1| signal peptide peptidase SppA, 67K type [gamma proteobacterium
           NOR5-3]
 gi|219676066|gb|EED32431.1| signal peptide peptidase SppA, 67K type [gamma proteobacterium
           NOR5-3]
          Length = 587

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 115/251 (45%), Gaps = 9/251 (3%)

Query: 45  GQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT-EV 103
           G I     L   +   ++     A+++ +++ GGS +A E I   I +++     +   +
Sbjct: 317 GTI-GGDTLSRLLRNTAQRADTKAIVLRVNTGGGSVFASEIIRAEIARIRQAGTPVVVSM 375

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
             +AAS GY I+ A++ I+A  T++ GSIGV   +P V+  L K G+    V ++ +   
Sbjct: 376 GSVAASGGYYIATAADRIIATPTTITGSIGVFAAFPTVERLLAKGGIHTDGVGTTGLAGG 435

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
             P   ++P    ++Q  VD  Y  F++LVS+ R+I  +    ++ GR+ +  +A + GL
Sbjct: 436 LRPDRALDPAVSDVLQQSVDDLYAQFLQLVSQGRSIDMETLDSIAQGRVLSARDALEAGL 495

Query: 224 IDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282
           +D +G  +   Q    L    Q    +    P  +     L+ LS    +   +      
Sbjct: 496 VDGLGSLDYAVQEAATLAGFSQDDYNVISIMPEFSSRDLLLQQLSERMGVSRLLA----- 550

Query: 283 KVQGLWAVWNP 293
            V GL  +W P
Sbjct: 551 -VPGLALLWGP 560



 Score = 80.4 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/310 (12%), Positives = 100/310 (32%), Gaps = 39/310 (12%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------------- 51
           V+   + + +                  + + G++ D +                     
Sbjct: 6   VVFLAILVVLWVTFSGKPEPLPERAALVLDLAGRVVDERSQIEAASLIFAQEPSSREILL 65

Query: 52  -ELIERIERISRDDSATALIVSLSSPGGSAYAGE----AIFRAIQKVKNRKPVITEVHEM 106
            +LI+ ++  S D+  +AL++ L    G    G+     +  AI + +     +  + + 
Sbjct: 66  MDLIDSVDIASSDERISALVLQLD---GLVSIGQSKTTELGEAIARFRETGKPVVAIGDY 122

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            +   Y ++  ++ ++      V   G      Y    L+KL V++   ++   K+   P
Sbjct: 123 YSQDQYRLAVEADAVLMHPFGAVALEGYSVYSNYFADALEKLSVTMHVFRAGEYKSIAEP 182

Query: 167 --FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--------GA 216
              ++++     + ++ +   +  +   V E R +       L +             G 
Sbjct: 183 LQRNDMSDGERAITKEWLQDLWSAYAAAVEERRGLETGALDALLNNFPQRLRDEGGNAGR 242

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
            A + GL+D +  + +  + L +L   +         P   Y            L   +I
Sbjct: 243 LALQAGLVDELLDRAQQNEYLTSLVGARDEDGSFAGLPFARYLSRMRPTALSPDLPTVSI 302

Query: 277 PLMKQTKVQG 286
              +   + G
Sbjct: 303 VTAQGNMLPG 312


>gi|119945670|ref|YP_943350.1| signal peptide peptidase SppA, 67K type [Psychromonas ingrahamii
           37]
 gi|119864274|gb|ABM03751.1| signal peptide peptidase SppA, 67K type [Psychromonas ingrahamii
           37]
          Length = 617

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 122/250 (48%), Gaps = 12/250 (4%)

Query: 31  VEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
           V      +A +   G+I                + +E    D+   A+++ + SPGGSA+
Sbjct: 322 VSGAKDQIAVVHASGEILSGTQPSNVIGGDSFSQLLETALNDNQIKAVVIRIDSPGGSAF 381

Query: 82  AGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           A E I + I  +K   K V+  +  +AAS GY I+ A++ I+A  T+L GSIG+   Y  
Sbjct: 382 ASEKIRQHILALKKADKKVVVSMASVAASGGYWIASAADYIIATPTTLTGSIGIFGMYAS 441

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L+  G+    + ++ + +  SP   +NP+  +++Q  +++ Y  F+ +V++ RN+ 
Sbjct: 442 ADKALNNFGIFNDGIGTTEL-SSFSPTRALNPELAEIIQLGIENGYQQFLEVVAQGRNMT 500

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
             +   ++ GR+WTG +AK +GLID +G  ++   +   L   Q    +K   P  +   
Sbjct: 501 VAEVDKIAQGRVWTGVDAKSLGLIDELGNLQDAINTASRLASLQD-YGVKIIQPVLSTKQ 559

Query: 261 CDLKNLSISS 270
             +  L + +
Sbjct: 560 HLINELLLGA 569



 Score = 76.6 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 90/280 (32%), Gaps = 42/280 (15%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------- 50
           +  +   I        L  +  V       +         +   G I +           
Sbjct: 15  INIMRLFIINVLFFAILAAIIFVINLDRPALLVAENSTLHLNFTGNIVEQAAPADFAGEI 74

Query: 51  -----------------QELIERIERISRDDSATALIVSLSSPGGSA-YAGEAIFRAIQK 92
                             +++  I R  +D   +A+++ L    G+A      I +A+  
Sbjct: 75  SKKMISSNENQNNEYQIDKILNTIHRAQQDPKISAILLELDGLDGAAINHIADIGKALND 134

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            K+    +T V +  +   YL++  ++ I      +V   G      Y K  LDKL ++ 
Sbjct: 135 FKSTGKSVTAVADNYSQTQYLLASYADKIYLNPQGMVLLPGYSVYRLYFKEALDKLLITP 194

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRN-----------I 199
              K    K+   PF  ++++  +    ++ +D  +  ++  +   R             
Sbjct: 195 HIFKVGTYKSFVEPFTTNKMSEASKLANKNWLDQLWKNYIDTILFQRKDNSKISVQSISP 254

Query: 200 PYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
              +    L      +   A +VGL+D +  + +V   L 
Sbjct: 255 TLKQLKSSLIKASGNSAVYALQVGLVDDLKNRNDVIDKLK 294


>gi|332993393|gb|AEF03448.1| signal peptide peptidase SppA, 67K type [Alteromonas sp. SN2]
          Length = 621

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 11/226 (4%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSAT 67
             T   V       +  +   VA +  +G I                  + +   D++  
Sbjct: 311 FNTYLKVVNPPLPSINSDIDKVAIVVAKGTILNGNQKAGTIGGDSTARLLRKARLDENVK 370

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAET 126
           A+++ + SPGGS    E I + + ++KN  KPV+  +   AAS GY I+  ++ I A+ +
Sbjct: 371 AVVLQIDSPGGSTLGSEIIRQEVLELKNAGKPVVVSMSTYAASGGYWIAANADRIFASPS 430

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           ++ GSIGV   +   +  LD LG+    V S+ +    S    + P+  Q++Q  V++SY
Sbjct: 431 TITGSIGVFGMFMTYENSLDYLGIHSDGVGSNELAG-FSAVRPLAPEFGQILQRNVETSY 489

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
             F+ LVS +R++  D+   ++ GR+W G +A ++GL+D +G  E+
Sbjct: 490 GNFLSLVSNARDMTVDEVDDVAQGRVWIGTDALELGLVDELGTLED 535



 Score = 95.4 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 92/284 (32%), Gaps = 38/284 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHV-EDNSPHVARIAIRG--QIEDS------- 50
           + F  K       ++  V + +   S         +     + + G   IE         
Sbjct: 19  LNFTRKLFFNVIFLVIFVGIIIAITSQEDDQLTVKANSALLLTLNGQLVIEKESVDPFEQ 78

Query: 51  -----------------QELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQK 92
                            +++++ IE   +D    AL++ L    G        + RAI  
Sbjct: 79  FLQDAMGSEPDNPEVLVRDVVKVIENAKQDRRIKALVLDLQGLSGGGLDKLRTVARAIND 138

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            K  +  +  + +      Y ++  +N +       +   G      Y K FL+KL V+ 
Sbjct: 139 FKTSEKPVYAIGDYYTKEQYYLASHANHVYLNPMGSLLLDGYGRYGMYFKDFLEKLKVTT 198

Query: 153 KSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
              +    K+   P   ++++  A +  +  +D  +  +   V+ +R IP        +G
Sbjct: 199 HIFRVGTYKSAVEPLIRNDMSEAAKEAERKWLDGYWQQYKEDVAAARGIPLSNFDETLEG 258

Query: 211 RI--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
            +             A +   +D +  +EEV   L  L  +   
Sbjct: 259 LLAKFEQAGGDFANYALQNNWVDALKTREEVRVELTGLVGENED 302


>gi|269121370|ref|YP_003309547.1| signal peptide peptidase SppA, 36K type [Sebaldella termitidis ATCC
           33386]
 gi|268615248|gb|ACZ09616.1| signal peptide peptidase SppA, 36K type [Sebaldella termitidis ATCC
           33386]
          Length = 584

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 132/291 (45%), Gaps = 21/291 (7%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-----------ELIERIERISRDDSAT 67
            + +  ++    V +    +A I   G I   +            + E+I+++ + ++  
Sbjct: 287 IIDIYDYAAKMRVPEKKDKIAVIYAEGPIMYDENTGNNIAITPVSIAEKIKQLKKVNNLK 346

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
            +++ ++SPGGSA + E I++   ++    PV   +   AAS GY I+ A + I A +++
Sbjct: 347 GVVLRINSPGGSALSAELIYQMFSEMP--VPVYVSMGSTAASGGYYIAMAGDKIFADKST 404

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           + GS+GV+   P +K     LG+   S+          PF +++ ++ + ++  +  +Y 
Sbjct: 405 ITGSVGVVSTIPKIKKAAGNLGIDSSSITKGKYSDLYDPFVDLSEESTERLRTSMQDTYK 464

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV----- 242
            F   V ++R I  DK    + G++W G EAK++GL+D +G  ++  Q++          
Sbjct: 465 EFKSRVEKNRGISADKLEEYAQGKVWLGDEAKEIGLVDQIGSLDDTIQAMAKDLKLQNYS 524

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLE---DTIPLMKQTKVQGLWAV 290
            + I   +D+N         +        +    + I  +KQ   + L+ +
Sbjct: 525 VEEIFVKEDYNKVLQRLSGYITAQVTLMDIPKVMNEIEFLKQNSAKPLYYL 575



 Score = 54.6 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 108/285 (37%), Gaps = 37/285 (12%)

Query: 3   FVLKKIKTRYV--MLSLVTLTVVYFSWSS--------HVEDNSPHVARI---------AI 43
           F +K+I + ++  +L++V  T+V+  +++            N  +   +          +
Sbjct: 13  FTIKEIYSFFLKLLLAIVVFTIVFLIFAASMGKILEQKNTVNKNYEYVVFNPYDPTEDKL 72

Query: 44  RGQI-------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
             ++        +  +++  ++ I++D     +I++L     ++   E +    +K+K  
Sbjct: 73  NNKLFVNSKYNVNFYKIVNSVDYIAQDPKVKGVIINLDQISLNSSQIEELIPKFEKIKKS 132

Query: 97  KPVITEVHEMAASAGYLISCASNI--IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
              I        +  Y ++  ++   +V + ++ +   G  +   Y K   DKLG+ IK 
Sbjct: 133 GKKIYAYGSYIDNNKYSLAVNASEISMVPSASADLSITGYHYSSLYYKNLFDKLGIDIKV 192

Query: 155 VKSSPMKAE--PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDG- 210
           +     K+       + ++ +    +  + D     F   +S++R I  +K    + +G 
Sbjct: 193 IHIGDFKSYGENYTRTSISDELKGELTRIFDRRLDIFTENISKARKIDKNKLSADVMNGD 252

Query: 211 -RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
               T   A+  G ID +    +    L+          I  ++ 
Sbjct: 253 SSFLTPFNARDRGFIDKLEYSGQ----LFQRLGITDENIIDIYDY 293


>gi|189346140|ref|YP_001942669.1| signal peptide peptidase SppA, 36K type [Chlorobium limicola DSM
           245]
 gi|189340287|gb|ACD89690.1| signal peptide peptidase SppA, 36K type [Chlorobium limicola DSM
           245]
          Length = 597

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 111/274 (40%), Gaps = 21/274 (7%)

Query: 31  VEDNSPHVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSP 76
               S  VA I + G I               D   L   ++    D    AL++ + SP
Sbjct: 291 KASGSEAVAVITLSGPIVRSVGSSAMSVDEGTDVGMLRRSLDAALSDKEVKALVLRIDSP 350

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GG A A   + + +     +KP++  +  +AAS GY+ + A   + A   ++ GSIGV  
Sbjct: 351 GGDALASSDMLQMLDSAAVKKPLVVSMSGIAASGGYMAALAGREVYAMPLTVTGSIGVYA 410

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
             P +     K+G+    V         + F  +  +A +         Y  F+  V+ S
Sbjct: 411 LKPDISELARKVGLGRDVVTRGRFADANTVFKPLEGEAYEKFIGASGDIYLDFIGKVAAS 470

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNP 254
           R +   +   ++ GR+WTG +AK+ GL+D  GG     ++   L         +I  +  
Sbjct: 471 RKMSVAEVDSVAGGRVWTGRQAKQKGLVDHAGGLFAAVRAAQRLAGMDGSKQPQILLYPE 530

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
            K+++   L+        +D +  +++  ++ + 
Sbjct: 531 QKSWFQMLLEGNP-----QDIVGSLERMAMRRVL 559



 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 112/291 (38%), Gaps = 22/291 (7%)

Query: 10  TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAI------------------RGQIEDSQ 51
             +V++ ++   + +  + S  +     V  + +                  +G+    Q
Sbjct: 12  FVFVLVPVIIAVLFFAFFRSSHDLPDRFVLTVPLGGSLEERSAESSPVPYLMQGESLSFQ 71

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
           +L+    + + D     +++ +     S      +  AI+KV+     +      A  + 
Sbjct: 72  DLLFLFNQAAGDKRIDTVLLEIGGLRTSPAKITELREAIEKVRAGGRKVVAYLHSAEDSD 131

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV- 170
           YL++ A + IV      +   G+  +  Y    L ++GV+ ++ +    K+   P++   
Sbjct: 132 YLLASACDSIVVERGGYLLLDGLKAESLYYTTPLGRIGVTFQAAQWKKYKSGVEPYTRTA 191

Query: 171 -NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLIDVVG 228
            +P+ ++ +  ++D  Y  ++  VS+ R I  D    + +   + + A+A K+GL D V 
Sbjct: 192 ASPEYIEQINALLDDVYADYIGYVSKRRGISRDSLESVINNVALVSAAKAVKLGLADGVA 251

Query: 229 GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
              E  +      +     +  D    +   + +  +  + +   + + ++
Sbjct: 252 TIWE-LKRATGRRISGKEPEENDRLFVQADRYRETLDWPVKASGSEAVAVI 301


>gi|325523003|gb|EGD01426.1| protease IV [Burkholderia sp. TJI49]
          Length = 261

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 59/218 (27%), Positives = 104/218 (47%), Gaps = 11/218 (5%)

Query: 7   KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58
           KI  R+    +L L+   ++ FS  +    +  H A + I G+I      ++ ++   ++
Sbjct: 44  KIFFRFAFLAVLVLLAFALIDFSSDAKFSSSGRHTALVTIDGEIAAGTNANADDINTALD 103

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115
               DD    +++ ++SPGGS      ++  I++++ +   KP+   V +M AS GY I+
Sbjct: 104 AAFDDDGTAGVVLRINSPGGSPVQAGMVYDEIRRLRAKYPDKPLYVVVTDMCASGGYYIA 163

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A++ I   + S+VGSIGVL         +DKLGV  +   S   K    PFS   PK  
Sbjct: 164 SAADKIFVDKASIVGSIGVLMDGFGFTGLMDKLGVQRRLHTSGENKGFYDPFSPETPKMD 223

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
              Q+++D  +  F++ V + R     +T  +  G  W
Sbjct: 224 AHAQELLDQVHAQFIKAVKDGRGKRLHETPDMFSGLFW 261


>gi|145220224|ref|YP_001130933.1| signal peptide peptidase SppA, 36K type [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206388|gb|ABP37431.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Chlorobium phaeovibrioides DSM 265]
          Length = 604

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/282 (22%), Positives = 113/282 (40%), Gaps = 17/282 (6%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIE--------------DSQELIERIERISRDDSATAL 69
               S    +    +A + I G I                  ++   ++R   D +  A+
Sbjct: 291 ASFDSPLEHEGREKLALVTISGPIVPTGSEGVEDMGEGVGEGQIRRALDRALADKNIRAI 350

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           +V + SPGG A A  ++   +     +KP++  +  +AAS GY+ + A   I A+  ++ 
Sbjct: 351 VVRIDSPGGDAMASASMLEMLDSAAVKKPLVVSMSGVAASGGYMAALAGKTIYASPLTIT 410

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV    P +    +K G+    V         S F  ++ +  +M  +     Y  F
Sbjct: 411 GSIGVYALKPEISGLAEKTGLGRSVVTRGRYADANSLFKPLDREEYRMFVEASGEIYRDF 470

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI--R 247
           V  V+ SR + +     L+ GR+WTG  A  VGL+D  GG  +  +    L    S    
Sbjct: 471 VAKVAASRTLSFAGADSLAGGRVWTGKRALAVGLVDRSGGLFDALREAQRLAGIDSTRHP 530

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +I   +  +  W   L N   + L++    ++ +       +
Sbjct: 531 EIVSLSEEQG-WIALLLNGDGARLMQRAERIVVKHLAGSALS 571



 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 97/237 (40%), Gaps = 21/237 (8%)

Query: 11  RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI------------------EDSQE 52
             ++ SL+ L  V+F   S        V  I + G +                     QE
Sbjct: 20  AVIVFSLLALAAVFFLQRSRSALPERFVLHIPLTGTVREHSSRSGALPFLVPMEPLSQQE 79

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           L+  + R S D    A+++S+     +      +  +I+ V+     +         +  
Sbjct: 80  LLFMLRRASGDSRVEAVLLSIDGLRAAPAKIGELRASIEAVRKGGKRVIAFLRSPEDSDC 139

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEV 170
           L++ A + I+ A+ S +   G+  +  Y K  L K+GVS ++ +    K+   P+  S  
Sbjct: 140 LLASACDSIIVAKGSFMLLDGLRAETLYYKTALAKIGVSFQAAQWKEYKSGVEPYVRSSP 199

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDV 226
           +P++ + + +++D  Y  ++  VS  R +  +    + + R   T  EA ++ L+D 
Sbjct: 200 SPQSRERLGELLDDVYGEYLGYVSRRRAMAPETLERIVNTRPLMTAEEAIRLKLVDG 256


>gi|254172566|ref|ZP_04879241.1| protease IV [Thermococcus sp. AM4]
 gi|214033495|gb|EEB74322.1| protease IV [Thermococcus sp. AM4]
          Length = 329

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 116/252 (46%), Gaps = 3/252 (1%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL--IERIERISRDDSATALIVSLSSP 76
           +L          +   +  +A + I G I+    L  +  +E++ +DDS   +++ + SP
Sbjct: 68  SLIRAIEMERKGINATNSTIAVVPIFGVIDGQTALNTVTTLEKLMKDDSVGGVLLWIESP 127

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GG   A   I+  ++ +K +KPV+     +AAS GY I+  ++ I+A   + VGSIGV++
Sbjct: 128 GGDVGAVREIYHEVEVLKAKKPVVAYTGGIAASGGYYIAVGTDRIIADPLAEVGSIGVIY 187

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
            +  +       G+ +   K+ P K   + +  +     + +  ++D+ +  F++ VS  
Sbjct: 188 VHFNLADNYASNGIKVDVFKTGPHKDMGAEWRALTEYERKKIWGMIDAYFQSFLQAVSMG 247

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R++  ++T   + G  W   E     L+D  G  +   Q L  L   +S       +P +
Sbjct: 248 RDMTLNETRKYATGETWLAVE-VNGTLVDETGNFQTAVQELEKLMGVESAEVKVYGSPTQ 306

Query: 257 NYWFCDLKNLSI 268
           +Y    L + ++
Sbjct: 307 SYSLGVLGDEAL 318


>gi|260890123|ref|ZP_05901386.1| hypothetical protein GCWU000323_01285 [Leptotrichia hofstadii
           F0254]
 gi|260860146|gb|EEX74646.1| signal peptide peptidase SppA, 36K type [Leptotrichia hofstadii
           F0254]
          Length = 262

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 118/257 (45%), Gaps = 11/257 (4%)

Query: 42  AIRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
            + G I           + + E++E +    +   L++ ++SPGGSA   E I++ ++K+
Sbjct: 2   NLEGVIDVKNPNKNITYENVCEKLEELKEIKNLKGLVLRINSPGGSALVSEKIYKKLKKL 61

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
               P+   + ++ AS GY I+     + A   +L GSIGV+  YP V   + KL ++++
Sbjct: 62  T--VPIYVSMGDVCASGGYYIATTGKKLFANNFTLTGSIGVVMMYPEVTGTMKKLDINLE 119

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
                      +PF ++   + + +   ++  Y  F   V  +R +  ++   ++ GR+W
Sbjct: 120 GFGKGAGFDMLNPFEKLGEDSKEKLIHNMNEVYGEFKEHVMVARGMNDEELEKIAQGRVW 179

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR-KIKDWNPPKNYWFCDLKNLSISSLL 272
            G+EAK + L+D +G  E+  +S+         + +I +          D+K   +S  +
Sbjct: 180 LGSEAKNINLVDEIGTLEDCIKSMANDLKLDKYKVQIVELTQTLKETLSDIKMPFVSEEI 239

Query: 273 EDTIPLMKQTKVQGLWA 289
            + +  ++    Q L+ 
Sbjct: 240 REKVEFLQGNINQVLYY 256


>gi|149925005|ref|ZP_01913327.1| peptidase S49, protease IV:Peptidase S49, SppA [Plesiocystis
           pacifica SIR-1]
 gi|149814120|gb|EDM73741.1| peptidase S49, protease IV:Peptidase S49, SppA [Plesiocystis
           pacifica SIR-1]
          Length = 887

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 116/275 (42%), Gaps = 28/275 (10%)

Query: 26  SWSSHVEDNSPHVARIAIRGQI---------------EDSQELIERIERISRDDSATALI 70
           +        SP+ A + + G I                    + + I  +  D +   ++
Sbjct: 562 TPERETWSESPYYAVVLLEGTIIGGKSRTIPILDIKFTGGDTVADTIRALRGDSACKGIV 621

Query: 71  VSLSSPGGSAYAGEAIFRAI--------QKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           + + S GGSA+A E ++R +        +  K   P++  + ++AAS GY +   ++ I 
Sbjct: 622 LRVDSGGGSAFASEVMWREVALTREAWEKDKKGSPPIVVSMSDVAASGGYYVPVGADTIF 681

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE-PSPFSEVNPKAVQMMQDV 181
           A   ++ GSIGV++ +  V   LD LGV++  ++      +  + +   +P+ ++  Q  
Sbjct: 682 AEPLTITGSIGVVYMHYDVSGLLDMLGVNVDRIERGSPAIDANAIWQPWSPEQLERQQKG 741

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           ++ +Y  F+  VS  R +  +    +  G +W+G  AK +GLID  GG  E    +    
Sbjct: 742 IEQTYDLFLSRVSGGRGMTKEAINEVGRGHVWSGKRAKDIGLIDEFGGLREALDEVRERS 801

Query: 242 VDQSIRKIKDWN---PPKNYWFCDLKNLSISSLLE 273
            +    K KD+     P       L      SL+ 
Sbjct: 802 GEP-TYKAKDYPLRLLPSRPSLVQLLVKGAGSLVA 835



 Score = 72.7 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 94/232 (40%), Gaps = 11/232 (4%)

Query: 41  IAIRGQIEDSQELIERIERISRDDSA---TALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
           I ++  I + + LI  + R+ R ++A   + L++     G    AG+ +  A+++V++  
Sbjct: 341 IELK-SIGNQRTLIATLRRLERAEAAGERSILLIKADGFGMGWAAGQELRDALRRVRDAG 399

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +    E   +  Y I+  +  +         ++G+  +  + K  L K+GV ++SV  
Sbjct: 400 GHVYAYAEQPNTRDYWIASVAEKVYVHPAGRFATVGLGARRLFYKDALAKIGVQVQSVHI 459

Query: 158 SPMKAEPSPFSEVN--PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215
              K+    F+  +      +    ++D ++   +  ++++R +                
Sbjct: 460 DEYKSAHESFTRSSRSDYDREQRTALLDDTWDTVLYDIAQARGMSISAVADTIFESPLGP 519

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYAL-----GVDQSIRKIKDWNPPKNYWFCD 262
            EA   G  D +  ++EV ++L        GV  S+R+     P +  W   
Sbjct: 520 QEAVDAGFADAITHRDEVLETLGEQLDESGGVVVSLRRFAPTTPERETWSES 571


>gi|294012283|ref|YP_003545743.1| protease IV [Sphingobium japonicum UT26S]
 gi|292675613|dbj|BAI97131.1| protease IV [Sphingobium japonicum UT26S]
          Length = 632

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 111/231 (48%), Gaps = 10/231 (4%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPG 77
             +H   N   +  + I G I D +          +   + +   +    AL+V + SPG
Sbjct: 302 MKAHKPANGGEIGVLTIAGDIVDGEAGPGTAAGDTIAALLRKALAEKDLKALVVRVDSPG 361

Query: 78  GSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GS  A E I  AI + K+   P++  +  +AAS GY +S  +++I A   ++ GSIGV  
Sbjct: 362 GSVMASEKIRSAIMEAKSEGLPIVASMGNVAASGGYWVSTPADVIFAEPDTITGSIGVFG 421

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
             P  +  L K+GV+   VK++P+  +P       P+  ++MQ  V+  Y  FV LV++S
Sbjct: 422 ILPSFEGTLAKIGVTTDGVKTTPLSGQPDIAGGTTPEFDRIMQMGVEDIYGRFVGLVAQS 481

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           R     +   ++ GR+W G  A+++GL+D  GG EE       L      +
Sbjct: 482 RRKTPQQIDAIAQGRVWDGGTARQIGLVDRFGGLEEAVAEAAKLAKIDPAK 532



 Score = 73.1 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 80/215 (37%), Gaps = 13/215 (6%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMA 107
              +++  ++    D    A++++L    G        + +A+  V+  K  +     + 
Sbjct: 81  GLADIVAALDAARDDRKVKAVVLNLDGFMGGGQVALARVGKALDAVRAAKKPVFAYATIY 140

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           +   Y ++  ++         V   G      Y K  +DKLGV+    +    K+   PF
Sbjct: 141 SDDSYQLAAHASESWVNPLGGVAITGRGGSGLYYKGLIDKLGVNTHVYRVGTYKSFVEPF 200

Query: 168 --SEVNPKAVQMMQDVVDSSYHWFVRLVSESRN--------IPYDKTLVLSDGRIWTGAE 217
             +E +P+A Q  Q + D+ +  + + V+++R                  + G +     
Sbjct: 201 TRTEQSPEARQANQALADALWEDWRQEVAKARPRARLAAYVRDPAGLAEAAGGNL--AKA 258

Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           A   GL+D +G +      +  +  D    K  D+
Sbjct: 259 AVSAGLVDRMGDEAAFGARVAEVAGDAPDDKAGDF 293


>gi|162448648|ref|YP_001611015.1| protease IV [Sorangium cellulosum 'So ce 56']
 gi|161159230|emb|CAN90535.1| protease IV [Sorangium cellulosum 'So ce 56']
          Length = 602

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 112/222 (50%), Gaps = 11/222 (4%)

Query: 34  NSPHVARIAIRGQIED-----------SQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             P +  I + G I              + L+  +    ++     +I+ + SPGGSA A
Sbjct: 318 PRPILGVIEVHGAIVSRARFRGASLASEERLVASLRAARQNPRVQGVILHVDSPGGSALA 377

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            + I   + ++   KPV+  +  +AAS GY ++ A++ IVA   ++ GSIGV+     + 
Sbjct: 378 SDRIHHEVTRLAEVKPVVACLSNVAASGGYYVAAAAHAIVAQPQTITGSIGVVSARFALG 437

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
           P L++LGVS   VK        SP  +++     +++  +D+ Y  F+R+V+  R  P +
Sbjct: 438 PLLERLGVSTDVVKRGARADLFSPSRKLDEGERAVVERELDAIYAAFLRVVARGRRRPVE 497

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           +   L+ GR+++GA+A+  GL+D++GG E     L  +   +
Sbjct: 498 EIEPLAQGRVYSGADAQARGLVDMLGGFERALHELRQMIGPK 539



 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 74/194 (38%), Gaps = 3/194 (1%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
             + + E  + + RD     L++ + S         ++  A+ +++     I     M A
Sbjct: 63  SVERVRELGKHLMRDPRPAGLLLRMRSVHAGPAVAASLRDALLEIRAGGKDIVAYLPMGA 122

Query: 109 SAGYLI-SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP- 166
               L+ + A+  IV    ++V  +G   +  YV+  L+++GV  +       K      
Sbjct: 123 DTTTLLLASAARAIVVGPETMVSPLGFAVEGRYVRRALEQVGVEPEVFAKGMYKNAGEML 182

Query: 167 -FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
               ++    + +  ++D         +++ R +  +      D   +   +A   G++D
Sbjct: 183 VRDTMSAAQREQVGALLDGRLGDLTAALAQGRRVDRETAARWIDEAPFGAEQAVARGIVD 242

Query: 226 VVGGQEEVWQSLYA 239
            V  ++E+   L A
Sbjct: 243 AVAYEDELEHMLAA 256


>gi|94677025|ref|YP_588883.1| protease 4 [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94220175|gb|ABF14334.1| signal peptide peptidase SppA, 67K type [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 618

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 117/234 (50%), Gaps = 11/234 (4%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLS 74
            +        +S  +A I + G I + QE         +  +I     D +  ALI+ ++
Sbjct: 322 IYPIQQKNTLHSAQIAVIFVDGTITNEQERPGLVNCDKIAFQIRNACLDPNVKALILRVN 381

Query: 75  SPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           SPGGS  A E I   ++  +N  KP++  +  MAAS GY IS   NII+A+ +++ GSIG
Sbjct: 382 SPGGSVNASEIIRAELETTRNANKPIVISMGGMAASGGYWISTPGNIIIASPSTITGSIG 441

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           +      ++  LD +G+    V +SP+    S   ++  +   MMQ  V++ Y+ FV LV
Sbjct: 442 IFGIVHTIENLLDYVGIHADGVATSPIAGT-SITKKLPAELSTMMQLNVENGYNNFVSLV 500

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           ++SRN    +   ++ G IW G++A K GL+D +G  ++       L   +  +
Sbjct: 501 AQSRNKTISEIEKIAQGHIWIGSDALKKGLVDKLGDFDDAVSQAAKLANLKQYK 554



 Score = 86.2 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 97/287 (33%), Gaps = 39/287 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARI-AIRGQIEDSQ-------- 51
           + F  + I   +++L +V +  +    ++         A +  ++G I D          
Sbjct: 23  LIFFRELIANLFILLLIVVIVNICLHITNTTPSFMKKGALVMDLKGFIVDQSIEKKKLRL 82

Query: 52  -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91
                              +++  + +   ++  T L++ L +  G+     + I +A+ 
Sbjct: 83  FNRNLHNGSNYTIPENSLFDIVNILRQAKNNNHITGLVLLLKNFYGADQPSLQYIGKALH 142

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           + +N    I  V +  + A Y ++  +N I       V   G      Y K  LDKL ++
Sbjct: 143 EFRNSGKPIYAVGDNYSQAQYFLASYANKIYLLPQGEVDLHGFATNNLYYKSLLDKLRIN 202

Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------ 203
               +    K+   PF    ++  A           +  ++ +V+ +RN+   +      
Sbjct: 203 SHVFRVGTYKSAAEPFLRDNMSKAARDADSRWTKQLWQNYLNIVATNRNLTPQQLFPNLS 262

Query: 204 --TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 S  +  T   A K   +D V  + ++   +          K
Sbjct: 263 TILKKFSAVKGDTAQYALKNKWVDEVLSRSQIDNIMIKAFGFNDQNK 309


>gi|281419691|ref|ZP_06250690.1| signal peptide peptidase SppA [Prevotella copri DSM 18205]
 gi|281406220|gb|EFB36900.1| signal peptide peptidase SppA [Prevotella copri DSM 18205]
          Length = 594

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 127/282 (45%), Gaps = 22/282 (7%)

Query: 29  SHVEDNSPHVARIAIRGQIE--------DSQE------LIERIERISRDDSATALIVSLS 74
                    +A    +G I         DS++      +I+ ++ ++ +    A+++ ++
Sbjct: 295 DDSNLMGEEIAVYYCQGSIVRMETPSIYDSEQQIVSTKVIKDLQELADNSQVKAVVLRIN 354

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           S GG AYA E I+RA++++  +KPV+  +  MAAS  Y +S  +  I+A  T+L GSIG+
Sbjct: 355 SGGGDAYASEQIWRAVKELNKKKPVVVSMGGMAASGAYYMSMGAQYIMAQPTTLTGSIGI 414

Query: 135 LFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFVR 191
               P     +  KLG     VK++      S       + + +  MQ+ V+  Y  F  
Sbjct: 415 FGALPDFSDLMTKKLGFKYDEVKTNRNSTYASAGMSRPWSAEEIATMQNYVNRGYSLFRN 474

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
            V+E R +  ++   ++ GR+W G +AKK+ LID  GG  +       L    S + ++ 
Sbjct: 475 RVAEGRKMSTEQVEKIAQGRVWLGTDAKKIKLIDGFGGLSDAIDKAAELAHLSSYQAVEY 534

Query: 252 WNPPKNYWFCDLKNLSISS---LLEDTIPLMKQTKVQGLWAV 290
             P    W   L +++  +    L++ + L      Q    +
Sbjct: 535 --PALAGWMEQLLDMAGGNKGTYLDEQLRLALGDLYQPFIMI 574



 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 93/282 (32%), Gaps = 33/282 (11%)

Query: 1   MEFVLKKIKTRYV----------MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS 50
           M+   K +    V          +L  + +  +  S +S        V  + ++GQIED 
Sbjct: 1   MKDFFKNVAATIVGLFAFGLIMTILGFICIIGMVASSNSKPALKDNSVMVMKLQGQIEDR 60

Query: 51  QE-------------------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
            E                   ++  I +   +D    + +            + I  A+ 
Sbjct: 61  TEDNWLGELTGEQFNNIGMNRILSSIRKAKNEDKVKGIYLETGILETDYATLQEIRNALA 120

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
             K     I    +  +  GY ++  +N +       V   G+  Q  Y+K    K GV 
Sbjct: 121 DFKKSGKWIIAYGDALSQGGYYLASVANKVYVNPEGNVDWHGIASQPQYIKDVAAKFGVH 180

Query: 152 IKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
              VK    K+    ++E  ++    + +   +   +   +  VS+SRNI  D     +D
Sbjct: 181 FTVVKVGKYKSYTETYTEDKMSDANREQVSRYISGLWLQMLGDVSKSRNISKDSLNRYAD 240

Query: 210 GRIWTGAEA--KKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           G +        K   ++D     +E+   +      ++   I
Sbjct: 241 GLMVFDDTKLLKSRKMVDGFCYYDEIRDVVKKQLGLKADDTI 282


>gi|159464533|ref|XP_001690496.1| signal peptide peptidase [Chlamydomonas reinhardtii]
 gi|158279996|gb|EDP05755.1| signal peptide peptidase [Chlamydomonas reinhardtii]
          Length = 745

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 106/258 (41%), Gaps = 11/258 (4%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSP 76
             +         +  +   G I              +I ++  +++D S  A+++ + SP
Sbjct: 360 FPTLGTAGGKKRIVVLRTSGAIVGKASSGSVITPDGVIPKLRALAKDKSVAAVVLRVDSP 419

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GG A A + ++R I+++   KPVI  + ++AAS GY +  A+  IVA   ++ GSIGV+ 
Sbjct: 420 GGDALAADLMWREIRQLDAVKPVIASMADVAASGGYYMGMAARAIVAEPLTITGSIGVVT 479

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
               +     K+G + + +         +     + +  ++       +Y  F    + S
Sbjct: 480 GKFNLSELYAKIGYNKELISWGRFAELLADNRSFSKEEAELFDASAQHAYESFRNKAASS 539

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK--IKDWNP 254
           R++  +    ++ GR+W+G  A KV L+D +GG               +     + +   
Sbjct: 540 RDMDVEDMQAVAQGRVWSGNAAIKVKLVDALGGVNRAIAMARHAAGIPAEEPVTVVELGK 599

Query: 255 PKNYWFCDLKNLSISSLL 272
            +      +   +++  L
Sbjct: 600 VRPSPTALIGGGAMAGAL 617



 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 75/218 (34%), Gaps = 13/218 (5%)

Query: 34  NSPHVARIAIRGQIEDSQ-----------ELIERIERISRDDSATALIVSLSSPGGSAYA 82
               V    + G I D +            L + + + + D     + + ++        
Sbjct: 99  KKDSVLAFKLEGDISDQERTFFDSGTSLPALCQALRKAALDPRIQGVAIEIAPLAIGWGK 158

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            + I R I   +          + A    Y ++ A + + A  ++ +   G +    +++
Sbjct: 159 VQEIKRHIDYFRASGKYCVAYMKQAGEKEYYLATACSEMYAPPSAYLSLRGFVTGGTFLR 218

Query: 143 PFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
             LDK+GV  +  +    K+  +      +  +  + +  +       F+R VS +    
Sbjct: 219 GVLDKVGVEPQVKRIGAYKSAGDQLLRRTMASEQREQLGAIQADVVEEFLRQVSTALGKS 278

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
             + +   +  ++  A  K  G +  +  ++++   L 
Sbjct: 279 RQEVVEFVEAGVYDTAAFKAGGWLTDLWYEDQLINELK 316


>gi|84393631|ref|ZP_00992383.1| protease IV [Vibrio splendidus 12B01]
 gi|84375772|gb|EAP92667.1| protease IV [Vibrio splendidus 12B01]
          Length = 616

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 125/274 (45%), Gaps = 16/274 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
             +   S  VA I   G I D                + +   DD   A+++ + SPGGS
Sbjct: 318 PDLTSESHDVAVIVASGAIMDGKQPRGTVGGDTTAALLRQARNDDKVKAVVLRVDSPGGS 377

Query: 80  AYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           A+A E I   I+ + +  KPV+  +  +AAS GY IS  ++ I+A  T+L GSIG+    
Sbjct: 378 AFASEVIRNEIEAIKQAGKPVVVSMSSLAASGGYWISMGADKILAQPTTLTGSIGIFSVI 437

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  L+ +GV    V +SP        + ++  A    Q  +++ Y  F+ LV E+R 
Sbjct: 438 TTFEKGLNDIGVYTDGVGTSPFSGLGIT-TGLSDGAKDAFQMGIENGYRRFISLVGENRG 496

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDWNPPK 256
           +  D    ++ GR+WTG +A + GL+D +G  ++   +  +L      +I  +++     
Sbjct: 497 MEVDAVDKIAQGRVWTGQDAIQKGLVDEIGDFDDAIAAAASLAELETYNIYWVEEPLSTT 556

Query: 257 NYWFCDLKN---LSISSLLEDTIPLMKQTKVQGL 287
             +  +  N   +SI   ++  IP   Q   Q L
Sbjct: 557 EQFIQEFMNQVQMSIGFDIQSMIPSSLQPVTQQL 590



 Score = 95.8 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 97/282 (34%), Gaps = 37/282 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + FV   +   + +LS+  +  VYF S ++           + + G I +          
Sbjct: 19  ITFVRLALVNLFFLLSIAIIYFVYFHSDTTQPTVPQESALVLNLSGPIVEQSRYINPMDS 78

Query: 52  -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93
                            +++E I     DD+ T ++++    P  +      I +A+ + 
Sbjct: 79  VTGSLLGKDLPKENVLFDIVETIRYAKDDDNVTGIVLALKELPETNLTKLRYIAKALNEF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     I  V +    + Y ++  +  +  +    V   G      Y K  L+KL V+  
Sbjct: 139 KATGKPIYAVGDFYNQSQYYLASYATKVFLSPDGGVLLKGYSAYSLYYKTLLEKLDVNTH 198

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL------ 205
             +    K+   PF   +++  A +     +   +  +V  VS +R I            
Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESASRWLGQLWGAYVDDVSNNRQIDAKTLNPSMDSF 258

Query: 206 --VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
              L          A+K+GL+D +  +++V   L  +     
Sbjct: 259 LKDLESVDGDIAKLAEKLGLVDELATRQQVRLELADVFGSDG 300


>gi|188586361|ref|YP_001917906.1| Acid phosphatase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351048|gb|ACB85318.1| Acid phosphatase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 566

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 109/231 (47%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLS 74
           + LV +  +     S    N P +    I G+      + E++ ++  +     +IV + 
Sbjct: 288 VGLVKIEGMIIDGRSKAPQNYPPIPIPLIAGERAGDLTITEQLRKLGANPKIKGIIVFID 347

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           S GGSA A E+I   I+ +  +KPVI  + E AAS GY ++  ++ IV+  T+L GSIGV
Sbjct: 348 SGGGSALASESIAYTIRSITRQKPVIALLGEKAASGGYYVASQADYIVSYPTTLTGSIGV 407

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +         L+KL ++ +       +         N +  + MQ+ +  +Y+ F+  V 
Sbjct: 408 VAGKAVNTNLLNKLLINREINVRGNSREMFYSHRVFNDREREKMQEGLMRTYNLFLERVC 467

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           E R +   +   ++ G++WTG +A   GL+D +GG EE    +  L     
Sbjct: 468 EGRKMTKAQLDPIAKGKVWTGEQALAKGLVDELGGFEETKVKMKELTGLSK 518



 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 105/242 (43%), Gaps = 10/242 (4%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
            L ++++ IS D   T +++  ++        + +  A++ +KN    +    +  +++G
Sbjct: 62  NLKKQLKTISNDPRLTGVVLKQTNFNIPYTYLDEVIDALKILKNNNKKLYSWAKNYSTSG 121

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSE 169
           Y ++   + I       +  +G L +  ++K  L++LG+     K SP K   +    S 
Sbjct: 122 YFLASYCDEIFLQPGGKIDELGFLNESFFLKDALNQLGIEFDIFKISPYKTASDFLIRSN 181

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
            + +A +M Q +++S Y  F+  +S  R     +   L +   +T  E+ ++GLID + G
Sbjct: 182 SSKEAREMNQWIMNSIYDNFINNISWGRKKTKQEMEELVNNAPYTDNESLELGLIDKILG 241

Query: 230 QEEVWQSL-----YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
           +E++ + L           Q   KI+++       +      S  S+    +  ++   +
Sbjct: 242 EEDLVKFLKPLDKKESKKIQHSIKIENFKSAHKKLYPPRPKKSKGSV---GLVKIEGMII 298

Query: 285 QG 286
            G
Sbjct: 299 DG 300


>gi|319408201|emb|CBI81854.1| protease [Bartonella schoenbuchensis R1]
          Length = 283

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/267 (22%), Positives = 118/267 (44%), Gaps = 19/267 (7%)

Query: 38  VARIAIRGQIEDSQELIER----------IERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           +  + + G I DS   + R          +++   D  A A+++ ++SPGGS      IF
Sbjct: 20  IPVVRLHGAIMDSNSFMARTLSLGRCAPLLDKAFADKKAPAVVLIINSPGGSPVQSRLIF 79

Query: 88  RAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           + I+ + N K    +  + ++AAS GY+I+CA + I A  +S+VGSIGV+         L
Sbjct: 80  QRIRDLANEKNKQVLVFIEDVAASGGYMIACAGDEIFADPSSVVGSIGVVSASFGFPELL 139

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV  +   +   K    PF       V+ ++ +    +  F+ LV E R        
Sbjct: 140 KKIGVERRVYTAGKNKVVLDPFQPEKKMGVEHLKSLQLEVHQTFIDLVKERRASKLSDDS 199

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            +  G  W+G +  ++GL+D +G    V +  +         K++  +P K+++   + +
Sbjct: 200 DIFTGMFWSGKKGVELGLVDQLGDVRSVIKDRFGY-----DTKLRLISPSKSFFGPKMPS 254

Query: 266 LSISSLLEDTIPLMKQTKVQGLWAVWN 292
              + ++   +        +   A+W 
Sbjct: 255 GVTADMVYTAVDSAWMAAEE--RALWQ 279


>gi|33861736|ref|NP_893297.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33640104|emb|CAE19639.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 269

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 120/239 (50%), Gaps = 4/239 (1%)

Query: 33  DNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            +   +ARI I   I  S    +++ +++I  D    ALI+ + SPGG+    + I+ AI
Sbjct: 8   KSKKRMARIVIDEPITSSTRVSVLKALKQI-EDREFPALILRIDSPGGTVGDSQEIYSAI 66

Query: 91  QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           +++K +   V+     ++AS G  I  AS+ IVA   ++ GSIGV+ +   +   L+K+G
Sbjct: 67  KRLKEKGCKVVASFGNISASGGVYIGVASDKIVANPGTITGSIGVIIRGNNLSELLNKIG 126

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +  ++VKS   K   SP   ++ +  +++Q +++ SY  F   VSE RN+  D     +D
Sbjct: 127 IKFETVKSGIYKDILSPDKPLSKEGRELLQGLINESYKQFTEAVSEGRNLLVDDVKKFAD 186

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
           GRI+TG +AK +GL+D +G +    +    +       +   +   K      +    I
Sbjct: 187 GRIFTGTQAKDLGLVDKIGDEFVARELAAEMVNIDPKIQPVTFGKKKKKILGLIPGSRI 245


>gi|284117617|ref|ZP_06386744.1| protease IV [Candidatus Poribacteria sp. WGA-A3]
 gi|283829490|gb|EFC33855.1| protease IV [Candidatus Poribacteria sp. WGA-A3]
          Length = 785

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 106/253 (41%), Gaps = 16/253 (6%)

Query: 32  EDNSPHVARIAIRGQI---------------EDSQELIERIERISRDDSATALIVSLSSP 76
           +   P VA I   G +                 +  +   ++ +  DDS  A+++ + S 
Sbjct: 456 QVPQPKVAIIKAEGLMLTGDSFVDPFMGTQVMGADTITRIVKEVKDDDSVKAVVLRIDSG 515

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GG   A + I+R + ++K  KP++  + ++AAS GY I+  ++ IVA   ++ GSIGV+ 
Sbjct: 516 GGLVVAADTIWRELVRLKEVKPLVVSMGDVAASGGYYIAAPADTIVAEPGTITGSIGVIG 575

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                K   +KLG+  + +K        + + +       ++Q  +   Y  F   V+  
Sbjct: 576 GKYSFKGLYEKLGIHKEILKRGQHADFYTDYGDYPLAEKAIVQKQIKEIYDDFTEKVALG 635

Query: 197 R-NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
           R  +  +    L  GR+W+G +AK+ GL+D +GG                        P 
Sbjct: 636 RTELTVEDVDRLGRGRVWSGRQAKENGLVDELGGLSLAIAIAREHAKLGEKSVEIIEFPK 695

Query: 256 KNYWFCDLKNLSI 268
           K +    L  L +
Sbjct: 696 KTWMSELLSGLGV 708



 Score = 85.4 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 78/192 (40%), Gaps = 2/192 (1%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + L + +     DD    ++V +   G      + +  AI   +    V+       ++ 
Sbjct: 241 RSLKQVLPIAKWDDDVAGILVRIDGSGYGIAQLQEMSDAILDFRESGRVVFCYLSNCSTG 300

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFS 168
            Y+++ A + I+   ++ V  IG+  ++ + K  LD LG+          K+  +     
Sbjct: 301 DYMVASACDGILIQPSAEVRLIGIRTEHSFYKGALDLLGIRANLEHLGEYKSASDAFTRR 360

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
           +++    ++   ++D  Y   VR ++E R    +      D   +T  +A  V L+D + 
Sbjct: 361 DMSKAHREIQNIILDDLYDQLVRAIAEGRGWTRESVRKRIDEGPYTARQAFAVELVDRLV 420

Query: 229 GQEEVWQSLYAL 240
            ++E+   +  L
Sbjct: 421 YEDELLDVVTEL 432


>gi|289765650|ref|ZP_06525028.1| protease IV [Fusobacterium sp. D11]
 gi|289717205|gb|EFD81217.1| protease IV [Fusobacterium sp. D11]
          Length = 578

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 119/271 (43%), Gaps = 23/271 (8%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLS 74
             ++E ++  V  I + G I +S+             E +E++     +D   A+++ ++
Sbjct: 295 EENLESSNNVVYVIPLEGDIVESETEVFAGEENINVAETLEKLNIAKENDKIKAVVLRIN 354

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGGSA   + I   I+++ + KPV   +  +AAS GY IS  ++ I     ++ GSIGV
Sbjct: 355 SPGGSALTSDIIAEKIKELASEKPVYVSMSSVAASGGYYISANADKIFVDRNTITGSIGV 414

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +   P     +   GV+I+ +         S  +    K    + +     Y  F+ +VS
Sbjct: 415 VSILPDFSKLITDNGVNIEKISEGEYSDLYSSDT-FTEKKYNKIYNSNLKVYDDFLNVVS 473

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK---- 250
           ++R I  +K   +++GRIWTG EA K+GL D +GG  E    +           +     
Sbjct: 474 KARKIDKEKLKTIAEGRIWTGEEAVKIGLADEIGGLNEAIYGIAEDNDMDEYSIVVAKDK 533

Query: 251 -----DWNPPKNYWFCDLKNLSISSLLEDTI 276
                 +     Y   D K+L    + +D +
Sbjct: 534 FELGNIYKKYSRYIKMDTKDLIKEKIFKDYL 564



 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 10/210 (4%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASA 110
            L++ +E  S DD    +I+ ++    S    E +   +   +   K +I     +    
Sbjct: 84  TLLQSVENASYDDRVEGIILKMNGDSLSYAQSEELAHELSMARAADKKIIAYFENVGRKN 143

Query: 111 GYLISCASNIIVAAETSLVGSIGVLF-QYPYVKPFLDKLGVSIKSVKSSPMKAEPS--PF 167
            YL S A+ I + +  S   +I   F +  Y+K   DK GV    +     K+       
Sbjct: 144 YYLASYANEIYMPSANSTNVNIYPYFREEFYIKKLADKFGVKFNIIHVGDYKSYMENLAS 203

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA---EAKKVGLI 224
           S ++ +A +    ++D +Y+ F+ +VS +R +  D    +        A   +     LI
Sbjct: 204 STMSKEAREDTVRILDKNYNNFLDIVSLNRKLNRDDLDKIIKDGDLVAASSVDLMNNKLI 263

Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           D     + +   +   G    I  I+D+  
Sbjct: 264 DKYAYWDNIISMV---GGKDKIITIQDYTK 290


>gi|256027690|ref|ZP_05441524.1| protease IV [Fusobacterium sp. D11]
          Length = 589

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 119/271 (43%), Gaps = 23/271 (8%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLS 74
             ++E ++  V  I + G I +S+             E +E++     +D   A+++ ++
Sbjct: 306 EENLESSNNVVYVIPLEGDIVESETEVFAGEENINVAETLEKLNIAKENDKIKAVVLRIN 365

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGGSA   + I   I+++ + KPV   +  +AAS GY IS  ++ I     ++ GSIGV
Sbjct: 366 SPGGSALTSDIIAEKIKELASEKPVYVSMSSVAASGGYYISANADKIFVDRNTITGSIGV 425

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +   P     +   GV+I+ +         S  +    K    + +     Y  F+ +VS
Sbjct: 426 VSILPDFSKLITDNGVNIEKISEGEYSDLYSSDT-FTEKKYNKIYNSNLKVYDDFLNVVS 484

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK---- 250
           ++R I  +K   +++GRIWTG EA K+GL D +GG  E    +           +     
Sbjct: 485 KARKIDKEKLKTIAEGRIWTGEEAVKIGLADEIGGLNEAIYGIAEDNDMDEYSIVVAKDK 544

Query: 251 -----DWNPPKNYWFCDLKNLSISSLLEDTI 276
                 +     Y   D K+L    + +D +
Sbjct: 545 FELGNIYKKYSRYIKMDTKDLIKEKIFKDYL 575



 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 10/210 (4%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASA 110
            L++ +E  S DD    +I+ ++    S    E +   +   +   K +I     +    
Sbjct: 95  TLLQSVENASYDDRVEGIILKMNGDSLSYAQSEELAHELSMARAADKKIIAYFENVGRKN 154

Query: 111 GYLISCASNIIVAAETSLVGSIGVLF-QYPYVKPFLDKLGVSIKSVKSSPMKAEPS--PF 167
            YL S A+ I + +  S   +I   F +  Y+K   DK GV    +     K+       
Sbjct: 155 YYLASYANEIYMPSANSTNVNIYPYFREEFYIKKLADKFGVKFNIIHVGDYKSYMENLAS 214

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA---EAKKVGLI 224
           S ++ +A +    ++D +Y+ F+ +VS +R +  D    +        A   +     LI
Sbjct: 215 STMSKEAREDTVRILDKNYNNFLDIVSLNRKLNRDDLDKIIKDGDLVAASSVDLMNNKLI 274

Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           D     + +   +   G    I  I+D+  
Sbjct: 275 DKYAYWDNIISMV---GGKDKIITIQDYTK 301


>gi|240103706|ref|YP_002960015.1| Signal peptide peptidase SppA (sppA) [Thermococcus gammatolerans
           EJ3]
 gi|239911260|gb|ACS34151.1| Signal peptide peptidase SppA (sppA) [Thermococcus gammatolerans
           EJ3]
          Length = 329

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 112/252 (44%), Gaps = 3/252 (1%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL--IERIERISRDDSATALIVSLSSP 76
           +L              +  +A + I G IE    L  +  +E++ +DDS   +++ + SP
Sbjct: 68  SLIRAIEMERGGTNVTNATIALVPIFGVIEGQTALNTVTTLEKLMKDDSVGGVLLWIESP 127

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GG   A   I+  +Q ++ +KPV+     +AAS GY I+  +  I+A   + VGSIGV++
Sbjct: 128 GGDVGAVREIYHEVQVLRAKKPVVAYTGGIAASGGYYIAVGAERIIADPLAEVGSIGVIY 187

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
            +  +       G+ +   K+ P K   + +  +     + +  ++D+ +  F++ VS  
Sbjct: 188 VHFNLADNYASNGIKVDVFKTGPHKDMGAEWRALTEYERKKIWGMIDAYFQSFLQAVSMG 247

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           RN+  ++T   + G  W   +     L+D  G  +   + L  L   +S       +P +
Sbjct: 248 RNMTLNETREYATGETWLAIK-VNGTLVDETGNFQTAVEELEKLMGVESAEIKVYGSPTQ 306

Query: 257 NYWFCDLKNLSI 268
           +Y        ++
Sbjct: 307 SYSLGVFGEGAL 318


>gi|332297292|ref|YP_004439214.1| signal peptide peptidase SppA, 36K type [Treponema brennaborense
           DSM 12168]
 gi|332180395|gb|AEE16083.1| signal peptide peptidase SppA, 36K type [Treponema brennaborense
           DSM 12168]
          Length = 370

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/256 (25%), Positives = 120/256 (46%), Gaps = 10/256 (3%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIE------DSQELIERIERISRDDSATALIVSLSSPGGS 79
             +        ++A ++I G IE      D Q L++ I  ++ D     +++ + SPGG 
Sbjct: 79  FGTKPRFSLKEYLAVVSIEGVIEEKNDTYDQQWLLDTIGALAADSKNVGILLYIDSPGGG 138

Query: 80  AYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-F 136
            Y  + ++  + K K     PV+  +  +AAS GY I+CA++ ++A   +L GSIGV+  
Sbjct: 139 VYQSDEVYLELVKYKETTGNPVLAYLGPLAASGGYYIACAADYLIANRNTLTGSIGVISG 198

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
           Q   +   +DK G+ + +  +   K   S    +  +   +MQ + D  Y  F  +V+ES
Sbjct: 199 QSVDLSALMDKYGIKMNTFTAGRNKDMLSINRPLTEEQRSIMQSIADECYDQFTGIVAES 258

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP- 255
           R +  ++   L+DGR++T A+A + GLID +    +    L     +    +   + P  
Sbjct: 259 RGLDIEQVTALADGRVYTAAQALEHGLIDEIARYGDAVDILLNDVFENPALETVWFAPES 318

Query: 256 KNYWFCDLKNLSISSL 271
           K   +  L N   ++ 
Sbjct: 319 KTSLYRYLMNARAAAG 334


>gi|260494226|ref|ZP_05814357.1| signal peptide peptidase SppA, 67K type [Fusobacterium sp. 3_1_33]
 gi|260198372|gb|EEW95888.1| signal peptide peptidase SppA, 67K type [Fusobacterium sp. 3_1_33]
          Length = 589

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 119/271 (43%), Gaps = 23/271 (8%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLS 74
             ++E ++  V  I + G I +S+             E +E++     +D   A+++ ++
Sbjct: 306 EENLESSNNVVYVIPLEGDIVESETEVFAGEENINVAETLEKLNIAKENDKIKAVVLRIN 365

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGGSA   + I   I+++ + KPV   +  +AAS GY IS  ++ I     ++ GSIGV
Sbjct: 366 SPGGSALTSDIIAEKIKELASEKPVYVSMSSVAASGGYYISANADKIFVDRNTITGSIGV 425

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +   P     +   GV+I+ +         S  +    K    + +     Y  F+ +VS
Sbjct: 426 VSILPDFSKLITDNGVNIEKISEGEYSDLYSSDT-FTEKKYNKIYNSNLKVYDDFLNVVS 484

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK---- 250
           ++R I  +K   +++GRIWTG EA K+GL D +GG  E    +           +     
Sbjct: 485 KARKIDKEKLKTIAEGRIWTGEEAVKIGLADEIGGLNEAIYGIAEDNDMDEYSIVVAKDK 544

Query: 251 -----DWNPPKNYWFCDLKNLSISSLLEDTI 276
                 +     Y   D K+L    + +D +
Sbjct: 545 FELGNIYKKYSRYIKMDTKDLVKEKIFKDYL 575



 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 10/210 (4%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASA 110
            L++ +E  S DD    +I+ ++    S    E +   +   +   K +I     +    
Sbjct: 95  TLLQSVENASYDDRVEGIILKMNGDSLSYAQSEELAHELSMARAADKKIIAYFENVGRKN 154

Query: 111 GYLISCASNIIVAAETSLVGSIGVLF-QYPYVKPFLDKLGVSIKSVKSSPMKAEPS--PF 167
            YL S A+ I + +  S   +I   F +  Y+K   DK GV    +     K+       
Sbjct: 155 YYLASYANEIYMPSANSTNVNIYPYFREEFYIKKLADKFGVKFNIIHVGDYKSYMENLAS 214

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA---EAKKVGLI 224
           S ++ +A +    ++D +Y+ F+ +VS +R +  D    +        A   +     LI
Sbjct: 215 STMSKEAREDTVRILDKNYNNFLDIVSLNRKLNRDDLDKIIKDGDLVAASSVDLMNNKLI 274

Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           D     + +   +   G    I  I+D+  
Sbjct: 275 DKYAYWDNIISMV---GGKDKIITIQDYTK 301


>gi|114776783|ref|ZP_01451826.1| protease IV [Mariprofundus ferrooxydans PV-1]
 gi|114552869|gb|EAU55300.1| protease IV [Mariprofundus ferrooxydans PV-1]
          Length = 609

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 132/274 (48%), Gaps = 12/274 (4%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSP 76
           + S     ++  V  I   G I D ++         ++E +++   D++  A+++ + SP
Sbjct: 302 AVSEKEHKHAGRVGIIVASGMILDGEQPPGSIGSDTMVEMLQQAREDNAIKAVVLRIDSP 361

Query: 77  GGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           GGSA A E I  AI +++   KPV+  +  +AAS GY ++  +N I A+ T++ GSIG  
Sbjct: 362 GGSAQASEEIRTAIMRLQKAGKPVVVSMGGVAASGGYWMAAPANEIWASPTTITGSIGAF 421

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                ++  L++LG+    + ++ +     P   + P+  ++MQ  +   Y  F+ +V+ 
Sbjct: 422 GVMLNLQQGLEQLGIHSDGLGTTTIAGGMRPDRAMPPELSRVMQLTISDVYQHFLSVVAS 481

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
            R +   +   +++GR+W+G +A+++GL+D +GG ++  ++   L              P
Sbjct: 482 GRKMDKSRVAAIAEGRVWSGLDAQRLGLVDHLGGFDDAIKAAARLAALGDDYGRSWIRAP 541

Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +      L  +   +  +   P + Q   + L A
Sbjct: 542 EGLGEMLLSRIVGET--DALFPGVWQGMNRLLMA 573



 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 94/276 (34%), Gaps = 37/276 (13%)

Query: 14  MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS----------------------Q 51
           +  LV +  V    ++H +        +   GQI +                        
Sbjct: 23  LFLLVIMVFVAVMLTAHPKVPDQAALVLDPHGQIVEELELPSPLTMSLTGAAPMGQTRLH 82

Query: 52  ELIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           +L   I   + D     +++ L      S    + + RAI+  +    ++         +
Sbjct: 83  DLTAAIRDAAGDKRIRLMVLKLDDMSRSSLPVLQELRRAIEAFRATGKMVIAEGPNYTQS 142

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FS 168
            Y ++ A+N +       V   G      Y++  LDKL ++ +  ++   K+   P   +
Sbjct: 143 QYYLAAAANTVFLHPMGYVAIEGFSIYRNYIRDALDKLHITAEVFRAGKYKSAIEPLLRN 202

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV--------LSDGRIWTGAEAKK 220
           +++    +    ++ + +  +++ ++  RN+   +           L+D        AK 
Sbjct: 203 DMSDADREANGALLKTLWGSYLKDIARMRNLRPQRLQQVLDTPSRYLNDYHGNLAELAKG 262

Query: 221 VGLIDVV---GGQEEVWQSLYALG-VDQSIRKIKDW 252
            GL+D +   G  ++       +   +      +D+
Sbjct: 263 EGLVDELADQGTIDDYIAGAMDIEQGEYPAIAFRDY 298


>gi|103487702|ref|YP_617263.1| signal peptide peptidase SppA, 67K type [Sphingopyxis alaskensis
           RB2256]
 gi|98977779|gb|ABF53930.1| signal peptide peptidase SppA, 67K type [Sphingopyxis alaskensis
           RB2256]
          Length = 661

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 75/269 (27%), Positives = 126/269 (46%), Gaps = 10/269 (3%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSAT 67
              + +  +  ++   +    +A + + G I D +          + E I   + D S  
Sbjct: 325 FNAIPLENWVAANPPAEKGSAIAVVPVVGDIVDGEAPTGLAGGTTIAEHILDAATDSSVK 384

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAET 126
           A+++ + SPGGS  A E I +A+   K RK PV+  +  +AAS GY IS  ++ I A   
Sbjct: 385 AIVLRVDSPGGSVLASEEIRQALLAAKARKLPVVVSMANVAASGGYWISTPADRIFAEPE 444

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           ++ GSIGV    P     L K+GV+   + ++P+  +P  F  VN +   + Q  V+  Y
Sbjct: 445 TITGSIGVFGILPSFDRALAKIGVNADGIATTPLSGQPDIFGGVNEEFNALAQASVEDVY 504

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
             F  LV++SR  P DK L +++GR+W G  A+++GL+D  GG  E   +   L   +  
Sbjct: 505 TRFTGLVAKSRKQPLDKILPIAEGRVWAGGTARQLGLVDQFGGLPEALAAAAKLAKVEGD 564

Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
              + +    +     L N S +   E  
Sbjct: 565 FHARYFEEEPSELSRLLANWSGAGEEETA 593



 Score = 70.0 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 84/245 (34%), Gaps = 30/245 (12%)

Query: 39  ARIAIRGQIEDS---------------------QELIERIERISRDDSATALIVSLSSPG 77
             I + G + +                      ++++  +E  + D   T++++ L    
Sbjct: 82  LLIELDGIVTEQPTETDPFAALSGGPQLKEIRTRDVVHALETAASDKRITSVVLDLDRFL 141

Query: 78  GSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           G        I  AI KV+ +K  +        +  Y I+  ++ I A     V   G   
Sbjct: 142 GGGQVSLAEIGGAIDKVRAKKKPVLAFATAYTTDSYQIAAHASEIWADSIGGVAIAGPGG 201

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVS 194
              Y K  +D+LG++    +    K+   P+  S+ +P+A +         +  ++  V 
Sbjct: 202 SRLYYKGLMDRLGITANIYRVGTFKSAVEPYLRSDQSPEAKEANLAYASVLWDNWLADVK 261

Query: 195 ESR------NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           ++R          D    +          +   GL+D +G +    + +  +       K
Sbjct: 262 KARPAAKLDAYIADTVGAVRAAGNDLSKASLDAGLVDRLGSRMAFSRRVAEISGATDEGK 321

Query: 249 IKDWN 253
             ++N
Sbjct: 322 PWEFN 326


>gi|320334156|ref|YP_004170867.1| peptidase S49 [Deinococcus maricopensis DSM 21211]
 gi|319755445|gb|ADV67202.1| peptidase S49 [Deinococcus maricopensis DSM 21211]
          Length = 545

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 110/273 (40%), Gaps = 21/273 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQIE-------------------DSQELIERIERISRDDSATA 68
           +         VA +++ G I                     S  ++  + R   D +  A
Sbjct: 261 APRRAKGDGRVAVVSVEGSIVTGRSRNNPLPIPLVGGAMAGSDTVVAALRRAKADKATRA 320

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           +++ + SPGGSA A + I+R +Q   + KPV+  +  +AAS GY +   +  I+A+  ++
Sbjct: 321 IVLYVDSPGGSALASDLIWREVQ--TSEKPVVAVMGAVAASGGYYVVAGAQRILASPYTI 378

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIGV+   P ++ F  + G++ + V         S     +   + +++  ++  Y  
Sbjct: 379 TGSIGVVTGKPVLEAFNARHGLNPERVARQEHALMYSSSRPFSEGELALVERSIEEVYAR 438

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           F   V+  R +   +   L  GRIW+G +A   GLID +G      +    L        
Sbjct: 439 FTARVAAGRKLSVARVDELGRGRIWSGQDALTHGLIDELGDLRAGVERACELAGLPYGSA 498

Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
           +   + P+     +    +        +  + +
Sbjct: 499 VWHVDAPRGGKLPEFAREAAGVTFTPVLAELFR 531



 Score = 50.0 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 74/182 (40%), Gaps = 3/182 (1%)

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114
            ++E++        +++             A+ RAI ++   K  +  V  + A+     
Sbjct: 61  AKLEKLGNAPWLHGVLLRFGELTCGLVRARALARAIARLNEHKRTVAFVPHLNATTLLAA 120

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNP 172
           S A   I + E++ V   G   +  Y+  FL K GV+ ++V+    KA         ++ 
Sbjct: 121 SGA-REITSPESAEVMLQGFAMETTYLGAFLKKHGVAFENVRIREFKAALTRFSDEGMDA 179

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
              + +  ++  +   +V  ++ +R +P D         + +   A+  GLID V  ++E
Sbjct: 180 HNREQLSALLAGTEAAWVEELARARRVPEDTVRGWLTDPVTSADGARARGLIDRVAYEDE 239

Query: 233 VW 234
           + 
Sbjct: 240 LV 241


>gi|153853725|ref|ZP_01995081.1| hypothetical protein DORLON_01072 [Dorea longicatena DSM 13814]
 gi|149753475|gb|EDM63406.1| hypothetical protein DORLON_01072 [Dorea longicatena DSM 13814]
          Length = 327

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 120/266 (45%), Gaps = 20/266 (7%)

Query: 34  NSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGS 79
           +  ++A + + G I++                  +  I+ +  D +   +++ + SPGG+
Sbjct: 54  SEDYIAIVRVEGTIQEQSGSSILEASSGYQHDSTMNYIDELMDDSNNKGILLYVDSPGGT 113

Query: 80  AYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
            Y  E +++ +++ K   ++P+   +   AAS GY++S AS+ I A   +  GSIGV+  
Sbjct: 114 VYESEELYQKLKEYKETTKRPIWDYMAHYAASGGYMVSMASDKIYANSNTTTGSIGVIMS 173

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
              +     KLG+   S+ S   K      S+   + + + QD ++ +Y  FV +V++ R
Sbjct: 174 GYDMSGLYKKLGIRYVSITSGKNKDS----SKFTDEQIAIYQDQINEAYEEFVNIVADGR 229

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           ++  +    L+DGR +T  +AK  GLID +    ++  ++       +  +++       
Sbjct: 230 DMSVEDVKKLADGRTYTAKQAKNNGLIDEISLYPDMKDAMSKKLGTSTFYEMESDEGLLQ 289

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTK 283
             F   ++L   S  +      K  +
Sbjct: 290 SLFSKAESLVPKSEAQVLTETAKSVE 315


>gi|257054169|ref|YP_003132001.1| ClpP class periplasmic serine protease [Saccharomonospora viridis
           DSM 43017]
 gi|256584041|gb|ACU95174.1| ClpP class periplasmic serine protease [Saccharomonospora viridis
           DSM 43017]
          Length = 300

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 113/262 (43%), Gaps = 21/262 (8%)

Query: 29  SHVEDNSPHVARIAIRGQIE------------DSQELIERIERISRDDSATALIVSLSSP 76
               +    V+ + + G I             +   +   ++R    +   A+ + ++SP
Sbjct: 35  GDRAERKDVVSVVKLHGVITPQASPLAARGVINLASVESALKRAFGHERLKAVALQINSP 94

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG+      +   I+++ + K  PVI    ++AAS GY ++CA++ I A  TSLVGSIGV
Sbjct: 95  GGAPTQSGLVAERIRQLADDKGVPVIAFAEDVAASGGYWLACAADEIYAHRTSLVGSIGV 154

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +         L++ G+  +   S   K+   PFS   P+ V+ +  +    +  FV  V 
Sbjct: 155 VTNSFGFARLLERFGIERRLYTSGEAKSRLDPFSPEKPEDVEWLNKLHTQLHDLFVEWVK 214

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           + R     ++  L +G +W G +A ++GL+D +G   ++ +  Y                
Sbjct: 215 QRRGSRLAESEELFNGDVWLGPKALELGLVDGLGNLRDIVKQRYPEAEIV-------VAE 267

Query: 255 PKNYWFCDLKNLSISSLLEDTI 276
           PK      L   S ++ + D +
Sbjct: 268 PKKPLLAKLGVGSPAAAVLDAV 289


>gi|317051685|ref|YP_004112801.1| signal peptide peptidase SppA, 36K type [Desulfurispirillum indicum
           S5]
 gi|316946769|gb|ADU66245.1| signal peptide peptidase SppA, 36K type [Desulfurispirillum indicum
           S5]
          Length = 326

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 65/278 (23%), Positives = 125/278 (44%), Gaps = 19/278 (6%)

Query: 35  SPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSPGGSAY 81
              +  I I+G I  +             QE++  ++   RD    A+I+++ +PGG+  
Sbjct: 46  QDKILVIPIQGFISSTPREGMLTTKPSLVQEVVAHLDMARRDPLIRAVILTVDTPGGTTV 105

Query: 82  AGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
             + ++  I++ +     PV+  +  MA S GY IS AS++I A   ++ GS+G +F  P
Sbjct: 106 DSDILYHEIERFRLETGTPVVVSLMGMATSGGYYISLASDLITAHPATITGSVGTIFIRP 165

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            V   ++KLG+  +  +S  +K   SPF    P   +++Q +VD    +F+ LV + R +
Sbjct: 166 KVHGLMEKLGLEAQVTRSGSLKDMGSPFRPELPAEQELIQQMVDDVNGFFLELVQQRRRL 225

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP---- 255
             +    ++  RI+T ++A +VGLID V     V      +       ++  +       
Sbjct: 226 SAEHMADVASARIYTASQALEVGLIDEVLHFPRVLTRAAEISGASPDARVVVYRRSAYAN 285

Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
            N +     +    +L++        +   G + +W P
Sbjct: 286 DNVYNTMTNSAPGPALVDFGFVGHMASLKSGFYYLWAP 323


>gi|257125230|ref|YP_003163344.1| signal peptide peptidase SppA, 67K type [Leptotrichia buccalis
           C-1013-b]
 gi|257049169|gb|ACV38353.1| signal peptide peptidase SppA, 67K type [Leptotrichia buccalis
           C-1013-b]
          Length = 594

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 61/274 (22%), Positives = 122/274 (44%), Gaps = 20/274 (7%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVSLSS 75
           +       +  +A I   G I                ++++IE+ ++  +   +++ ++S
Sbjct: 298 YEKTGNSRNGTIAVIYAEGSILYDANGVTEGTITPDNILQKIEKATQTKNLKGIVLRVNS 357

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
            GGSA A E I++ + K+  + PV   + + AAS GY IS A   + A   ++ GSIGV+
Sbjct: 358 GGGSALASEVIYQELSKL--KIPVYVSMADTAASGGYYISTAGKKVFANSATITGSIGVV 415

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
              P +    DK GV   S+           F+ ++ ++   +   ++ +Y  F   VS+
Sbjct: 416 SMLPKLYNAQDKYGVRSNSISKGRYSDINDSFAPLSEESRAKISQSMEETYKEFKSRVSK 475

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
           +R I  +     + G+IW G EAK + L+D +   +EV + +      +    +++    
Sbjct: 476 NRKIDENTLENYAQGKIWLGDEAKDIKLVDGIASLDEVIKIMAKDLNLRKNYAVENIYLE 535

Query: 256 KNYWFCDLK-------NLSISSLLEDTIPLMKQT 282
           +++               ++S+ LE +IP  K+ 
Sbjct: 536 EDFSQKLKSLSNMITAKFNLSAQLEKSIPQAKKA 569



 Score = 66.2 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 95/212 (44%), Gaps = 9/212 (4%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
           +++  ++ I  ++    ++++L +   S+   E + +  +++K     +        ++ 
Sbjct: 86  DILNSLDDIKNNNQVKGVVIALDTINLSSAKIEELIKKFEELKANNKKVYAFGAYITNSN 145

Query: 112 YLISCASNI--IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE--PSPF 167
           Y ++  ++   +V + ++ +   G  +   Y K   DK+GV+++ V+    K+       
Sbjct: 146 YKLASIADEVVMVPSASASLDLTGYHYSDLYYKGLFDKIGVNMEVVRIGNYKSYGEEYIG 205

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRI--WTGAEAKKVGLI 224
           +++ P+    +  ++++ Y+ F+  V+++R +  +     + +G I   T   A+  GL+
Sbjct: 206 NDMTPELRSELTRILENRYNKFITDVAKNRKVDKNALNNDIVNGNITNLTPFSARDKGLV 265

Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           D +       + L     + +I  I D+   +
Sbjct: 266 DKLEQFSTFTERL--NIREDNIADITDYYQKR 295


>gi|255036559|ref|YP_003087180.1| signal peptide peptidase SppA, 67K type [Dyadobacter fermentans DSM
           18053]
 gi|254949315|gb|ACT94015.1| signal peptide peptidase SppA, 67K type [Dyadobacter fermentans DSM
           18053]
          Length = 588

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/219 (30%), Positives = 117/219 (53%), Gaps = 2/219 (0%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           S++ ++ ++ I  +D   A+++ ++SPGGSA A + ++R IQ    +KPVI  + ++AAS
Sbjct: 327 SEKFVKELKEIRENDKIKAVVIRINSPGGSALASDVMWREIQLTAKKKPVIASMSDVAAS 386

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK-LGVSIKSVKSSPMKAEPSPFS 168
            GY ++   + IVA   ++ GSIG+      V  F++  LG++   V +SP    P+   
Sbjct: 387 GGYYMAMGCDTIVAQPNTITGSIGIFGLIFNVTDFMNNKLGITFDGVGTSPHADWPTATR 446

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
           E+      M+Q  V+  Y  F R  +E R +P +K   L+ GR+W+G EAK+ GL+DV+G
Sbjct: 447 EMTEFEKGMIQKSVNEGYETFTRKAAEGRKMPVEKLKSLAQGRVWSGVEAKQNGLVDVLG 506

Query: 229 GQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFCDLKNL 266
           G ++  +         +   +I+ +   K       + L
Sbjct: 507 GVDDAIKLAAKAAKLNEGDYRIRYYPEKKRPLDEMFEKL 545



 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 87/214 (40%), Gaps = 5/214 (2%)

Query: 41  IAIRGQ--IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
           I   G+  +   +++++ ++    DD    + +    P       E I  A+ + K  K 
Sbjct: 69  IPFSGEDNVVGLKDILDALKSAKADDKIKGIYLKTEGPEAGWATLEEIRTALLEFKKSKK 128

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            +    E  +  GY I+  ++ I       +   G+  +Y + K   DKL +     +  
Sbjct: 129 FVVTYGESYSEKGYYIASVADKIYLNPAGGIEWNGLSAEYSFFKGTFDKLEIKPLVFRVG 188

Query: 159 PMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTG 215
             K+  E     +++  + +   +++ +    F++ +S SR+IP D+   L+D   +   
Sbjct: 189 EFKSAIEMFSRQDMSEASKKQSVELIGAINDNFLKNISASRSIPVDELKNLADSLAVENP 248

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
             A K   I  +G Q+E+  ++       + + I
Sbjct: 249 KAALKYKFITHMGYQDELEAAMKKDLKVAADKSI 282


>gi|15802177|ref|NP_288199.1| protease 4 [Escherichia coli O157:H7 EDL933]
 gi|12515791|gb|AAG56752.1|AE005399_6 protease IV, a signal peptide peptidase [Escherichia coli O157:H7
           str. EDL933]
          Length = 618

 Score =  120 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVZNSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++      A         ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAK-AAELAKAKQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 99.7 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKADK 306


>gi|332090582|gb|EGI95679.1| signal peptide peptidase SppA, 67K type [Shigella boydii 5216-82]
          Length = 618

 Score =  120 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++      A         ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAK-AAKLAKVKQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 99.7 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306


>gi|328675284|gb|AEB27959.1| Signal peptide peptidase SppA, 36K type [Francisella cf. novicida
           3523]
          Length = 264

 Score =  120 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 111/252 (44%), Gaps = 16/252 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYA 82
            S  ++  PH+A + + G I +      + + + ++    + +   +IV ++SPGGS   
Sbjct: 5   FSSSKELVPHIALVKVNGIIAEDAEANAERINKSLDDAYANKAVKGVIVEINSPGGSPVQ 64

Query: 83  GEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
            + I+  +Q ++++    P+     ++ AS GY I+  +  I A + ++ GSIGV+    
Sbjct: 65  SDEIYSHMQYLQHKYPTIPMYAVCTDVCASGGYYIAAGAKDIYANKMTITGSIGVIGSRF 124

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                +DKLG+  +   S   K    PFS    +     + ++D ++  F+  V +SR  
Sbjct: 125 GFTGLMDKLGIERRIYTSGKNKDFLDPFSPQKSEQTAQFKKLLDETHQVFIAAVEKSRGD 184

Query: 200 PYDK--TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
                       G  ++G +A+++GLID     +++    +      +   I D+  P +
Sbjct: 185 RLKDKSMDTTFSGEPFSGIQAQQMGLIDGFASVDQIRNEKF------NNIDIVDYTRPLD 238

Query: 258 YWFCDLKNLSIS 269
           +       L  S
Sbjct: 239 FLTAVSHKLGNS 250


>gi|120402354|ref|YP_952183.1| signal peptide peptidase SppA, 67K type [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955172|gb|ABM12177.1| signal peptide peptidase SppA, 67K type [Mycobacterium vanbaalenii
           PYR-1]
          Length = 594

 Score =  120 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 32/288 (11%)

Query: 36  PHVARIAIRGQIE----------------DSQELIERIERISRDDSATALIVSLSSPGGS 79
           P +A + + G I                  +  +   + R + DD   A+++ + SPGGS
Sbjct: 301 PKIAVVTVAGPIVSGRGGRQMSPMGGSSSGADTIAAALRRAAADDDIAAIVLRVDSPGGS 360

Query: 80  AYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
               E I+R + + + R KPV+  +  +AAS GY +S A++ IVA   ++ GSIGVL   
Sbjct: 361 VTGSETIWREVVRTRERGKPVVASMGAVAASGGYYVSMAADAIVANPGTITGSIGVLTGK 420

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +   D+LGV   +V+++      S  +    +    ++   D  Y  FV+ V+E R+
Sbjct: 421 LVARELKDRLGVGSDTVRTNANADAWSINAPFTDEQQAHVEAEADLFYRDFVQRVAEGRH 480

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           +  +    ++ GR+WTGA+A + GL+D +GG     +    L       +++  N P + 
Sbjct: 481 LSVEAVEQVARGRVWTGADALERGLVDELGGLRTAIRRAKVLAGIDEDTRVEVENLPSSS 540

Query: 259 WFCDLK----NLSISSLLEDTIPLMK-----------QTKVQGLWAVW 291
               L+    +L  ++ L++    +            Q  + G+  +W
Sbjct: 541 LLDVLRPKPSSLPAAASLQEVFGALAIQSVLGIADRTQRSLTGVNVLW 588



 Score = 94.3 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 78/236 (33%), Gaps = 9/236 (3%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL-----IERIERISRDDSATALIVSLS 74
           +  +    +         +A I   G I   + L     +  I R + D     LI  + 
Sbjct: 34  ILELDLQSAPPESAGFDPIAVI--SGVIGPGRPLLLREAVAAIHRAAEDPRVAGLIARVQ 91

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
                    + +  AI     +KP +        +  Y ++ A   +    +  VG +G 
Sbjct: 92  IDAAPPGPVQELRDAIVAFTGKKPSLAWAETYPGTLSYYLASAFGEVWMQPSGTVGLVGF 151

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                +++  LDKLGV  + V     K+               +    +V+         
Sbjct: 152 ATSALFLRDALDKLGVQAQFVTRGEYKSAANLFTQDSYTDAHREADTALVNGLRTQVWDA 211

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           V+ SR I       L+D       +A   GL+D +G ++E +  +  +   + +  
Sbjct: 212 VAASRGIDRAALDALADRAPLLRDDAVTAGLVDRIGFRDEAYARIAEMSGAEGVSP 267


>gi|15831726|ref|NP_310499.1| protease 4 [Escherichia coli O157:H7 str. Sakai]
 gi|168749412|ref|ZP_02774434.1| protease 4 [Escherichia coli O157:H7 str. EC4113]
 gi|168762162|ref|ZP_02787169.1| protease 4 [Escherichia coli O157:H7 str. EC4501]
 gi|195937452|ref|ZP_03082834.1| protease 4 [Escherichia coli O157:H7 str. EC4024]
 gi|208810557|ref|ZP_03252433.1| protease 4 [Escherichia coli O157:H7 str. EC4206]
 gi|209400845|ref|YP_002270837.1| protease 4 [Escherichia coli O157:H7 str. EC4115]
 gi|254793384|ref|YP_003078221.1| protease 4 [Escherichia coli O157:H7 str. TW14359]
 gi|261227739|ref|ZP_05942020.1| protease 4 [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258095|ref|ZP_05950628.1| protease 4 [Escherichia coli O157:H7 str. FRIK966]
 gi|13361939|dbj|BAB35895.1| protease IV [Escherichia coli O157:H7 str. Sakai]
 gi|188016236|gb|EDU54358.1| protease 4 [Escherichia coli O157:H7 str. EC4113]
 gi|189367493|gb|EDU85909.1| protease 4 [Escherichia coli O157:H7 str. EC4501]
 gi|208725073|gb|EDZ74780.1| protease 4 [Escherichia coli O157:H7 str. EC4206]
 gi|209162245|gb|ACI39678.1| protease 4 [Escherichia coli O157:H7 str. EC4115]
 gi|209768380|gb|ACI82502.1| protease IV [Escherichia coli]
 gi|209768382|gb|ACI82503.1| protease IV [Escherichia coli]
 gi|209768386|gb|ACI82505.1| protease IV [Escherichia coli]
 gi|254592784|gb|ACT72145.1| protease IV (signal peptide peptidase) [Escherichia coli O157:H7
           str. TW14359]
 gi|320188454|gb|EFW63116.1| Protease IV [Escherichia coli O157:H7 str. EC1212]
 gi|326342134|gb|EGD65915.1| Protease IV [Escherichia coli O157:H7 str. 1044]
          Length = 618

 Score =  120 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++      A         ++ +     +
Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAK-AAELAKAKQWHLEYYVDEPTF 556

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585



 Score = 99.7 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 79  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKADK 306


>gi|237738354|ref|ZP_04568835.1| protease IV [Fusobacterium mortiferum ATCC 9817]
 gi|229420234|gb|EEO35281.1| protease IV [Fusobacterium mortiferum ATCC 9817]
          Length = 572

 Score =  120 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 109/242 (45%), Gaps = 12/242 (4%)

Query: 27  WSSHVEDNSPHVARIAIRGQI------------EDSQELIERIERISRDDSATALIVSLS 74
           +   +  +   +A I   G I               +++   I++  ++ +   +++ L+
Sbjct: 292 YQESILHSQNKIAIIYAEGNILLDGERGGIGNSITPEKINSEIDKALKNPNIKGIVLRLN 351

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGGSA A   I   +Q+    KP+   +  +AAS GY ++ A   I A   S+ GSIGV
Sbjct: 352 SPGGSALASNLIHHKLQEANKIKPIYVSIGGVAASGGYYMASAGQKIFADNESITGSIGV 411

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +   P     + K+ V+++SVK        S   + N K  + +       Y+ F+ +V+
Sbjct: 412 VSLIPNFNELMKKIDVNVESVKKGEYSDLFSLTKDFNGKDREKIYASSVKVYNEFLDVVA 471

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           + RN+  +    ++ G++W G E K++ L+D +GG E    SL       S   ++    
Sbjct: 472 QGRNLNREYVHSIAQGKVWLGEEGKEIDLVDEIGGIENAISSLAKELKIDSYEVVEIVEK 531

Query: 255 PK 256
            K
Sbjct: 532 EK 533



 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 99/276 (35%), Gaps = 28/276 (10%)

Query: 2   EFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIA----------------IRG 45
            F++K      +++ ++   + Y S    +      V  +                 I G
Sbjct: 24  SFIIKFSLFLILIVGVIGAILKYSSKDETIVLKENSVVVVDLGKEYKEKLEGLPKFLIEG 83

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
           +I +   L+ ++  I  D+    +++ L +        E +   +++++    ++     
Sbjct: 84  EI-NFYSLLTKLNSIKNDNKVKGVLLKLDNMTLDRGQIEELSGKLEELRKNNKMVLAYAN 142

Query: 106 MAASAGYLISCASNIIVAAETSL--VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
              +  Y ++ AS+ I+   T    V   G   +  Y K   DKLG+    +     K+ 
Sbjct: 143 NMNNRNYSLALASDKIIMPPTMSANVNITGYYNELAYYKGLADKLGIKFNVIHVGDYKSY 202

Query: 164 --PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA--EA 218
                 ++++ +  + +  + D  Y+ F+  + E R I  +     +  G        + 
Sbjct: 203 GENFTKNQMSQEYRENIIRLQDRIYNNFLNKIVEKRKINKNLINNRILAGDFVFSEPYQM 262

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           +K  +ID    + +    +  +   + +  I+ +  
Sbjct: 263 EKFNMIDEKVYESQ----IKDIIGSERLIPIEKYQE 294


>gi|254718370|ref|ZP_05180181.1| signal peptide peptidase SppA, 36K type [Brucella sp. 83/13]
 gi|306839601|ref|ZP_07472405.1| signal peptide peptidase SppA, 36K type [Brucella sp. NF 2653]
 gi|306405299|gb|EFM61574.1| signal peptide peptidase SppA, 36K type [Brucella sp. NF 2653]
          Length = 235

 Score =  120 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 87/198 (43%), Positives = 139/198 (70%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             F      + N PH+A++ I G I +++EL++R++RI+ +D+   +I+ L SPGG+   
Sbjct: 36  FAFYSLRGAKFNQPHIAKVRIEGTIFENEELLKRLDRIAGNDAVKGVILLLDSPGGTTVG 95

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           GEAI+ A++K+  +KPV+T+V  +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + 
Sbjct: 96  GEAIYDAVRKIAKKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 155

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LD LGV ++++KSSP+KAEP+ FS  + +A  M++ ++  SY WFV +V E R   ++
Sbjct: 156 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRGMIMDSYDWFVGIVQERRAFTHE 215

Query: 203 KTLVLSDGRIWTGAEAKK 220
           + L L++G ++TG +A  
Sbjct: 216 QALALANGAVFTGRQALD 233


>gi|187776034|ref|ZP_02992803.1| protease 4 [Escherichia coli O157:H7 str. EC4196]
 gi|189010434|ref|ZP_03006318.1| protease 4 [Escherichia coli O157:H7 str. EC4076]
 gi|189402336|ref|ZP_03006680.1| protease 4 [Escherichia coli O157:H7 str. EC4401]
 gi|189403499|ref|ZP_03007105.1| protease 4 [Escherichia coli O157:H7 str. EC4486]
 gi|189405098|ref|ZP_03007686.1| protease 4 [Escherichia coli O157:H7 str. EC869]
 gi|189406058|ref|ZP_03008051.1| protease 4 [Escherichia coli O157:H7 str. EC508]
 gi|208816614|ref|ZP_03257734.1| protease 4 [Escherichia coli O157:H7 str. EC4045]
 gi|208818606|ref|ZP_03258926.1| protease 4 [Escherichia coli O157:H7 str. EC4042]
 gi|217328805|ref|ZP_03444886.1| protease 4 [Escherichia coli O157:H7 str. TW14588]
 gi|187769467|gb|EDU33311.1| protease 4 [Escherichia coli O157:H7 str. EC4196]
 gi|189000232|gb|EDU69218.1| protease 4 [Escherichia coli O157:H7 str. EC4076]
 gi|189356179|gb|EDU74598.1| protease 4 [Escherichia coli O157:H7 str. EC4401]
 gi|189360401|gb|EDU78820.1| protease 4 [Escherichia coli O157:H7 str. EC4486]
 gi|189372021|gb|EDU90437.1| protease 4 [Escherichia coli O157:H7 str. EC869]
 gi|189376761|gb|EDU95177.1| protease 4 [Escherichia coli O157:H7 str. EC508]
 gi|208730957|gb|EDZ79646.1| protease 4 [Escherichia coli O157:H7 str. EC4045]
 gi|208738729|gb|EDZ86411.1| protease 4 [Escherichia coli O157:H7 str. EC4042]
 gi|217318152|gb|EEC26579.1| protease 4 [Escherichia coli O157:H7 str. TW14588]
 gi|326343685|gb|EGD67447.1| Protease IV [Escherichia coli O157:H7 str. 1125]
          Length = 622

 Score =  120 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382

Query: 80  AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A E I   +   +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+    
Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V+  LD +GV    V +SP+    S    + P+A QMMQ  +++ Y  F+ LV+++R+
Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 501

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              ++   ++ G +WTG +AK  GL+D +G  ++      A         ++ +     +
Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAK-AAELAKAKQWHLEYYVDEPTF 560

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +   + N+S S  +   +P   Q  +    A
Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589



 Score = 99.7 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +    S     E  S     + I G I D         
Sbjct: 23  LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90
                               +++  I +   D + T +++ L +  G      + I +A+
Sbjct: 83  KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +   +V   G      Y K  LDKL V
Sbjct: 143 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  V+ +R IP  +     
Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 262

Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 L+     T   A +  L+D +    E+ ++L          K
Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKADK 310


>gi|126726020|ref|ZP_01741862.1| peptidase S49 [Rhodobacterales bacterium HTCC2150]
 gi|126705224|gb|EBA04315.1| peptidase S49 [Rhodobacterales bacterium HTCC2150]
          Length = 264

 Score =  120 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/263 (23%), Positives = 111/263 (42%), Gaps = 17/263 (6%)

Query: 33  DNSPHVARIAIRGQIE------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
            ++P VA I + G I       + Q L   IER        A+ + ++SPGGS      I
Sbjct: 9   KSTPLVAVIRLSGVISTGRGGLNDQTLAPMIERAFAKGKPKAVALVINSPGGSPVQSSLI 68

Query: 87  FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
              I+++   K  PV   V ++AAS GY ++CA++ I    TS++GSIGV+         
Sbjct: 69  SARIRRLSEEKEIPVYAFVEDVAASGGYWLACAADQIFVDATSIIGSIGVISASFGFDKV 128

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           +   GV  +   +   K+   PFS      V+ ++ + +  +  F+  V   R    D+ 
Sbjct: 129 MANYGVERRIHTAGKSKSFMDPFSPQKAADVKRIKSLQEPIHQAFINHVQTRRGTRLDEN 188

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             +  G IW G +A  VG+ D +       + L+         + + + P K+       
Sbjct: 189 AEMFGGEIWVGQQALDVGIADGIAHVSPKMKELFG-----DKTRFRTYGPKKSALSR--- 240

Query: 265 NLSISSLLEDTIPLMKQTKVQGL 287
              +S + E  + + ++    G 
Sbjct: 241 -FGLSLVDETLLGIEERNLRAGF 262


>gi|260890698|ref|ZP_05901961.1| protease IV [Leptotrichia hofstadii F0254]
 gi|260859576|gb|EEX74076.1| protease IV [Leptotrichia hofstadii F0254]
          Length = 510

 Score =  120 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 119/265 (44%), Gaps = 20/265 (7%)

Query: 35  SPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           +  +A I   G I                +++++E+  +  +   +++ ++S GGSA A 
Sbjct: 222 NGTIAVIYAEGSILYDPNGVTEGVITPDNILQKVEKAMQTKNLKGIVLRVNSGGGSALAS 281

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           E I++ + K+    P+   + + AAS GY IS A N + A   ++ GSIGV+   P +  
Sbjct: 282 EIIYQELTKL--NIPIYVSMSDTAASGGYYISMAGNKVFANNATITGSIGVVSMIPKLYN 339

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
             DK GV   SV           F+ ++ ++   +   ++ +Y  F   VS++R I  + 
Sbjct: 340 AQDKYGVHSNSVSKGKYSDINDSFAPLSEESRAKITQSMEETYKEFKSRVSKNRKIDENT 399

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
               + G+IW G EAK + L+D +   +EV + +      +    ++     +++     
Sbjct: 400 LENYAQGKIWLGDEAKNINLVDGIASLDEVIKIMAKDLGLRKDYAVESIYLEEDFSQKLK 459

Query: 264 K-------NLSISSLLEDTIPLMKQ 281
                     S+S+ L+  IP +K+
Sbjct: 460 SFTNMVTEKFSLSTQLQKNIPQVKK 484



 Score = 63.1 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 93/212 (43%), Gaps = 9/212 (4%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
           ++++ ++ I  +     +I++L +    +   E + +  +++K     +        +A 
Sbjct: 2   DILQSLDDIKNNSQVKGVIIALDTIDLPSSKIEELSKKFEELKANNKKVYAFGAYITNAN 61

Query: 112 YLISCASNI--IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE--PSPF 167
           Y ++  +N   +V + ++ +   G  +   Y K   DKLG+S++ V+    K+       
Sbjct: 62  YKLAAIANEVVMVPSTSASLDLTGYHYSDIYYKGLFDKLGISMEVVRIGNYKSYGENYTG 121

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDG--RIWTGAEAKKVGLI 224
           +E+ P+    +  ++++ Y+ F+  +S++R I  +     + +G     T   A+   L+
Sbjct: 122 NEMTPELRSELTRILENRYNKFITDISKNRKIDKNTLNSDIINGNDTSLTPFAARDKNLV 181

Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           D +    +  + L     + ++  I D+   +
Sbjct: 182 DKLEHFSDFTKRL--NIREDNVADITDYYEKR 211


>gi|198283845|ref|YP_002220166.1| signal peptide peptidase SppA, 67K type [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665192|ref|YP_002426483.1| signal peptide peptidase SppA, 67K type [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248366|gb|ACH83959.1| signal peptide peptidase SppA, 67K type [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218517405|gb|ACK77991.1| signal peptide peptidase SppA, 67K type [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 605

 Score =  120 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 121/247 (48%), Gaps = 11/247 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQ----------IEDSQELIERIERISRDDSATALIVS 72
            Y + +      S  +A + I G           +  +Q  I++++R+  + S  A+++ 
Sbjct: 304 AYLAATKPSTTASAKIAVVPIDGMLVTGDAPLPGVVAAQATIKQLDRVGHEASVKAVVLQ 363

Query: 73  LSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
           ++SPGG   A +AI  AI +++   KPVI  +  + AS  Y +S A++ I A  T+L   
Sbjct: 364 VNSPGGDVNAAQAIRAAILRIRKAHKPVIVSMGTLGASGAYWLSTAADRIYAHPTTLTAD 423

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IGV   +P     L KLG+    + ++      SPFS +     + +Q +VD++Y  FV 
Sbjct: 424 IGVFALFPNYAGLLKKLGIHYSGIATTRNANAMSPFSPLGKNVQKALQAMVDNTYADFVN 483

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
           LV+ +R+IP +K    + GR W+G +A  +GL++ +GG  +  Q    L      +    
Sbjct: 484 LVANARHIPTNKVEHDAQGRAWSGLDAYHLGLVNALGGMPQAIQEAAKLAKLSKGKYQVQ 543

Query: 252 WNPPKNY 258
           + PP   
Sbjct: 544 YLPPPTP 550



 Score = 67.3 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 93/257 (36%), Gaps = 17/257 (6%)

Query: 48  EDSQELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
              +++++ I+R S D     L ++     GGS    + + RA+Q+ +     I      
Sbjct: 86  VSIRQMVQAIDRASTDARIHLLELNLSDFGGGSITQLDTVARALQRFRAHGKPIYAYAPD 145

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            +   YL++  +N I       V   G   +  Y K  LDKLG+++ S +    K+   P
Sbjct: 146 YSQDAYLLAAQANHIYMPRLGTVLITGFSTRGLYFKGLLDKLGITVYSFRQGKYKSAMEP 205

Query: 167 FS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--------GA 216
            +   ++  A       +   +  +++ V++ R +        +D               
Sbjct: 206 LTLTHMSKSAQVENAAWLKVWWDTYLQDVAKGRGLKATLVSRYADQLPELLENYQGNAAE 265

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE--- 273
            A K GLI  +G +    Q++      +   K         Y      + + S+ +    
Sbjct: 266 LALKQGLITRIGDEHAFRQAVA--AALKQPPKHIKKIGLHAYLAATKPSTTASAKIAVVP 323

Query: 274 -DTIPLMKQTKVQGLWA 289
            D + +     + G+ A
Sbjct: 324 IDGMLVTGDAPLPGVVA 340


>gi|300782067|ref|YP_003762358.1| serine protease [Amycolatopsis mediterranei U32]
 gi|299791581|gb|ADJ41956.1| serine protease [Amycolatopsis mediterranei U32]
          Length = 281

 Score =  120 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 108/260 (41%), Gaps = 21/260 (8%)

Query: 35  SPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVSLSSPGGSAYAG 83
              VA + + G I  S             +   + R    D   A+ + ++SPGG+    
Sbjct: 21  KDVVAVVKLHGVITPSPSPLARGAINLAAVETALTRAFGHDRLKAVALLVNSPGGAPTQS 80

Query: 84  EAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
             +   I+++ + K  PV+    ++AAS GY ++CA++ I A  TS+VGSIGV+      
Sbjct: 81  GLVAERIRQLADEKGVPVLAFCEDVAASGGYWLACAADEIYAHRTSMVGSIGVISGGFGF 140

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L++ G+  +   +   K+   PFS   P+ V+ ++ +    +  FV  V E R    
Sbjct: 141 TGLLERFGIERRLHTAGANKSRLDPFSPEKPEDVEWLKKMHTQLHELFVNWVKERRGDRL 200

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
             T  L  G +W GA+A  +GLID +G   ++    Y                PK     
Sbjct: 201 TDTEDLFTGDVWLGAKALDLGLIDGLGSLRQIITERYPDAEIS-------VAEPKKPLLA 253

Query: 262 DLKNLSISSLLEDTIPLMKQ 281
            L  L   +     +  + Q
Sbjct: 254 RL-GLGAPAAASAVLDAVTQ 272


>gi|119944686|ref|YP_942366.1| peptidase S49 [Psychromonas ingrahamii 37]
 gi|119863290|gb|ABM02767.1| peptidase S49 [Psychromonas ingrahamii 37]
          Length = 321

 Score =  120 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 68/281 (24%), Positives = 121/281 (43%), Gaps = 23/281 (8%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSS------HVEDNSPHVARIAIRGQIEDSQE-----LI 54
           ++    +  L+ + L    F + +        +   PH A + I+G I   +E     ++
Sbjct: 27  RRWGIFFKSLTFLYLFGAIFFFFNTQTNLLSDQQKEPHTAMVQIKGVIAADKEANANTIV 86

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAG 111
             +    +++ + A+++ ++SPGGS      +F  IQ+   +   K +   + E+ AS G
Sbjct: 87  TGLRAAFKNEFSQAVMLVINSPGGSPVQAGYVFDEIQRLRLLYPDKKLYAVIAELGASGG 146

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I A + SLVGSIGV          ++K+GV  +   S   K    PFS   
Sbjct: 147 YYIAAAADQIYADKASLVGSIGVTASSFGFVDLMNKVGVERRHYTSGKHKTFLDPFSPSK 206

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL---VLSDGRIWTGAEAKKVGLIDVVG 228
                  Q+V+D ++  F+ +V   R    +       L  G IW G +A  +GLID +G
Sbjct: 207 EAERDFWQEVLDVTHRQFINVVKTGRGDRINSDKNSTDLFSGLIWNGEQALALGLIDGLG 266

Query: 229 GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
               V + +           I +++   +      K L IS
Sbjct: 267 SPGFVAREIV------RAENIVNYSVQPSTIEKLTKRLGIS 301


>gi|255541922|ref|XP_002512025.1| Protease, putative [Ricinus communis]
 gi|223549205|gb|EEF50694.1| Protease, putative [Ricinus communis]
          Length = 578

 Score =  120 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 112/264 (42%), Gaps = 16/264 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSL 73
           W+  +      +A I   G I                ++ IE+I ++       A I+ +
Sbjct: 267 WTLGLTGGGDQIAVIRASGSISRVRSPTSLPGSGIVGEQFIEKIRQVRESKRYKAAIIRI 326

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
            SPGG A A + ++R I+ +   KPVI  + ++AAS GY ++ A+  IVA   +L GSIG
Sbjct: 327 DSPGGDALASDLMWREIRLLAETKPVIASMSDVAASGGYYMAMAAGAIVAENLTLTGSIG 386

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP-FSEVNPKAVQMMQDVVDSSYHWFVRL 192
           V+     +    +K+G + + +         +     + P   ++      ++Y  F   
Sbjct: 387 VVTGKFNLGKLYEKIGFNKEIISRGKYAELLAAEQRPLRPDEAELFARSAQNAYQQFRDK 446

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--K 250
            + SR++P +K   ++ GR+WTG +A   GL+D +GG                 +++   
Sbjct: 447 AAFSRSMPVNKMEEVAQGRVWTGKDAASRGLVDAIGGLSRAVAIAKQKASIPQEKQVILV 506

Query: 251 DWNPPKNYWFCDLKNLSISSLLED 274
           + + P       L  +  S    D
Sbjct: 507 ELSRPSPSLPEILSGVGSSIAGVD 530



 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 74/207 (35%), Gaps = 7/207 (3%)

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
              + I+     K +I  V  +     Y ++CA + I    ++     G+  Q  ++   
Sbjct: 88  ESNKKIEDFPTGKFIICYV-PVCREKEYYLACACDDIYVPPSAYFSLYGLTVQASFLGGV 146

Query: 145 LDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
           L+K+G+  +  +    K+  +      ++ +  +M+  ++D+ Y  ++  +S  +    +
Sbjct: 147 LEKVGIQPEVQRIGKYKSAGDQLTRKTMSEENCEMLTTLLDNIYGNWLDNISSIKGKERE 206

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--KDWNP--PKNY 258
           +     +  ++     KK G I  +   +EV   L      Q  + +   D+        
Sbjct: 207 EIENFINEGVYEVERLKKEGFITNIQYDDEVISMLKEKLGVQKDKSLPMVDYGKYSRVRN 266

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           W   L        +      + + +  
Sbjct: 267 WTLGLTGGGDQIAVIRASGSISRVRSP 293


>gi|224135361|ref|XP_002322054.1| predicted protein [Populus trichocarpa]
 gi|222869050|gb|EEF06181.1| predicted protein [Populus trichocarpa]
          Length = 691

 Score =  120 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 63/264 (23%), Positives = 114/264 (43%), Gaps = 16/264 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSL 73
           W+  +      +A I   G I                ++LIE+I +        A I+ +
Sbjct: 380 WTLGLTGGRDLIAIIRASGSISRVKSPLSLSGSGIIGEQLIEKIRQARESKKYKAAIIRI 439

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
            SPGG A A + ++R I+ +   KPVI  + ++AAS GY ++ A++ IVA   +L GSIG
Sbjct: 440 DSPGGDALASDLMWREIRLLAESKPVIASMSDVAASGGYYMAMAADTIVAENLTLTGSIG 499

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAE-PSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           V+     +    +K+G + + +          +    + P   ++      ++Y  F   
Sbjct: 500 VVTGKFSLGKLYEKIGFNKEIISRGKYAELLAADQRPLRPDEAELFAKSAQNAYEQFRDK 559

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--K 250
            + SR++P DK   ++ GR+WTG +A   GL+D +GG                 R++   
Sbjct: 560 AAFSRSMPVDKMEEVAQGRVWTGQDAASRGLVDAIGGFSRAVAIAKQKANIPQDRQVMLV 619

Query: 251 DWNPPKNYWFCDLKNLSISSLLED 274
           + + P       L  +  S +  +
Sbjct: 620 ELSRPSPTLPEILSGIGSSVVGAE 643



 Score = 83.5 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 97/290 (33%), Gaps = 17/290 (5%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDD 64
            LV L ++       V   S  V  + +RGQI D             ++ E   + + D 
Sbjct: 122 FLVKLKMLIAFPWERVRKGS--VLTMKLRGQISDQLKSRFSSGLSLPQICENFIKAAYDP 179

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
             + + + +          E + R I   K     +           Y ++ A + +   
Sbjct: 180 RISGIYLHIDGLNCGWAKVEELRRHIFNFKKSGKFVVAYLPACREKEYYLASACDDLYLP 239

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVV 182
            T+     G   Q  ++    + +G+     +    K+  +      ++ +  +M+  ++
Sbjct: 240 PTAYFSFYGFTVQAAFLAGVFENVGIQPDVQRIGKYKSAGDQLTRKSMSKENCEMLTAIL 299

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           D+ Y  ++  VS ++    +      +  ++     K+ GLI  +   +EV   L     
Sbjct: 300 DNIYGNWLDKVSSTKGKKIEDMKNFINEGVYKVERLKEEGLITNMHYDDEVISMLKEKVG 359

Query: 243 DQSIRKI--KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
            Q  + +   D++         L       L+         ++V+   ++
Sbjct: 360 VQKDKVLPMVDYSKYSRVRNWTLGLTGGRDLIAIIRASGSISRVKSPLSL 409


>gi|237742266|ref|ZP_04572747.1| protease IV [Fusobacterium sp. 4_1_13]
 gi|256845537|ref|ZP_05550995.1| signal peptide peptidase SppA, 67K type [Fusobacterium sp.
           3_1_36A2]
 gi|229429914|gb|EEO40126.1| protease IV [Fusobacterium sp. 4_1_13]
 gi|256719096|gb|EEU32651.1| signal peptide peptidase SppA, 67K type [Fusobacterium sp.
           3_1_36A2]
          Length = 578

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 14/236 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLS 74
              + D++  +  I + G I +S+             E +E++     +D   A+++ ++
Sbjct: 295 EGSMTDSNNIIYVIPLEGDIVESETEVFSGEENINVSETLEKLNIAKENDKIKAVVLRVN 354

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGGSA   + I   ++++   KPV   +  +AAS GY IS  +N I     ++ GSIGV
Sbjct: 355 SPGGSALTSDIIAEKVKELAEEKPVYVSMSSVAASGGYYISANANKIFVDRNTITGSIGV 414

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +   P     +   GV+I+ +                 K    + +     Y  F+ +VS
Sbjct: 415 VSILPDFSKLITDNGVNIEKISDGEYSDLY-SVDSFTEKKYNKIYNSNLKVYEDFLNVVS 473

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
           + R I  +K   +++GRIWTG EA K+GL D +GG  E   +L           + 
Sbjct: 474 KGRKIDKEKLKTIAEGRIWTGDEAIKIGLADEIGGLNETIYALAEDNDMDEYAIVV 529



 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 98/281 (34%), Gaps = 32/281 (11%)

Query: 3   FVLKKI-------KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARI----------AIRG 45
           FV+K+I            +  ++   ++                 +           ++ 
Sbjct: 13  FVIKEILSFFIKLFLFLFVAGIIISAIIKSFEEKPTVAIKNKAYVLINLADSYNERLLKS 72

Query: 46  QIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPV 99
            + +   +     ++ IE +S DD    +I+ ++    S    E +   +   +   K +
Sbjct: 73  NLFEDDSINFYTLLQSIENVSYDDRVEGIILKINGDSLSYAQSEELAHELSMARAANKKI 132

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF-QYPYVKPFLDKLGVSIKSVKSS 158
           I     +     YL S A+ I + +  S   +I   F +  Y+K   DK GV    +   
Sbjct: 133 IAYFENVGRKNYYLASYANEIYMPSANSTNVNIYPYFREEFYIKQLADKFGVKFNIIHVG 192

Query: 159 PMKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216
             K+       S ++ +A +    V+D +Y+ F+ +VS +R I  D    +        A
Sbjct: 193 DYKSYMENLASSTMSKEAREDTVRVLDKNYNNFLDVVSLNRKINRDDLDKIIKDGELVAA 252

Query: 217 ---EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
              +     LID     + V   +   G    I  ++++  
Sbjct: 253 SSVDLMNNNLIDKYAYWDNVISMV---GGKDKIITVQEYTK 290


>gi|117618146|ref|YP_857847.1| signal peptide peptidase SppA, 67K type [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117559553|gb|ABK36501.1| signal peptide peptidase SppA, 67K type [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 614

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 76/277 (27%), Positives = 126/277 (45%), Gaps = 16/277 (5%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSL 73
           +    S + +     V  I   G I D            L + +    RDD   AL++ +
Sbjct: 311 LAAIPSQYPQSGKDEVGLIVASGAIMDGVQPAGTIGGDSLADLLADARRDDKVKALVLRV 370

Query: 74  SSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
            SPGGSA+A E I   +  + +  KPV+  +   AAS GY IS  ++ I A+ T+L GSI
Sbjct: 371 DSPGGSAFAAEQIRAELLALKQAGKPVVISMGSYAASGGYWISADADKIFASPTTLTGSI 430

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GV   +  +   L + GV    V ++           +     Q +Q  V+ +Y  FV L
Sbjct: 431 GVFGMFATIDKALSQYGVHTDGVGTTDY-VGVGLTRALPEHVGQAIQLNVEDTYQRFVGL 489

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS--IRKIK 250
           VS+ R +  ++T   ++GR+WTG +AK +GL+D  G QE   ++   L   +   +  I+
Sbjct: 490 VSKGRGLSPEETEKAAEGRVWTGQDAKALGLVDEFGDQEAAIKAAAELANLKEWQVTPIE 549

Query: 251 DWNPPKNYWFCDLKNLSI---SSLLEDTIPLMKQTKV 284
                K+ +   L + S    +S L++ +P      +
Sbjct: 550 QEESAKDKFLRQLFDSSAQVLASHLQNWLPAGLGKAL 586



 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 82/207 (39%), Gaps = 11/207 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
            +L+  I+    DD   AL++      G S    + +  AI   K     +  + +    
Sbjct: 93  SDLLWAIKSAKDDDRIKALVIKPQGLQGTSFSKLQEVASAIDAFKESGKPVIAMADFYTQ 152

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             YL++  ++ ++  ++  V   G+     Y K  L+KL ++    K    K+   P+  
Sbjct: 153 GQYLLAAHADHVLLNQSGAVVIEGLGVYQTYYKSALEKLNITPHVFKVGTYKSFVEPYTR 212

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAK 219
            E++P++ +  Q  +D  +  +V  V+E R I  D           +L          A 
Sbjct: 213 DEMSPESKEANQRWLDQLWQSYVADVAEQREIEPDAVAPGKDRFLELLRKAGGNAANYAL 272

Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSI 246
             GL+D +  ++E+ Q++     +   
Sbjct: 273 DNGLVDQLATRDEMTQAVIKEVGESDD 299


>gi|319892761|ref|YP_004149636.1| Protease IV [Staphylococcus pseudintermedius HKU10-03]
 gi|317162457|gb|ADV06000.1| Protease IV [Staphylococcus pseudintermedius HKU10-03]
 gi|323464206|gb|ADX76359.1| exfoliative toxin [Staphylococcus pseudintermedius ED99]
          Length = 330

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 68/263 (25%), Positives = 124/263 (47%), Gaps = 17/263 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDS---------------QELIERIERISRDDSATALIVSLS 74
              D++  +A I + G+I D+               Q  ++++E I  DDS   +++S++
Sbjct: 48  EEGDSNKKIAEIVVEGEIIDTGASGGLFGGGAGYNHQAALKQLETIKNDDSIKGVLLSVN 107

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIG 133
           SPGG  Y  +  ++ I++VK+    I    E  A++G     A  + I A   SL GSIG
Sbjct: 108 SPGGGTYESDEFYQKIKEVKDSGKKIFVQMENLAASGGYYISAPADKIYAGPQSLTGSIG 167

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V+ +       LD LG+   ++KS   K   S   ++  +  +++Q +   S+  FV +V
Sbjct: 168 VISESKDYSELLDNLGIKTNTIKSGAHKDILSSSRKMTDEEREILQSINKDSFDQFVNVV 227

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
            E R +   K   L+DGRI++  +AK  GLID +G +++  +      +     +I  ++
Sbjct: 228 KEGRQMSESKVRELADGRIYSAQQAKSNGLIDAIGYKDKTLKD-LKKAIKVENPEIITFD 286

Query: 254 PPKNYWFCDLKNLSISSLLEDTI 276
           P ++     L   S  + L   +
Sbjct: 287 PEESNLTSFLGMKSFINGLRAEL 309


>gi|300728472|ref|ZP_07061832.1| signal peptide peptidase SppA, 67K type [Prevotella bryantii B14]
 gi|299774273|gb|EFI70905.1| signal peptide peptidase SppA, 67K type [Prevotella bryantii B14]
          Length = 593

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 123/278 (44%), Gaps = 20/278 (7%)

Query: 32  EDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSLSSPGG 78
           ED    +A     G I D             + ++ + +E ++ DD   A+++ ++S GG
Sbjct: 297 EDKGDKIALYYCEGSIIDKANSLNNNEPQIVASKVCKDLEDMANDDRIKAVVLRINSGGG 356

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            AYA E I+  ++K+  +KPV+  +  MAAS  Y +S  +  IVA  T+  GSIG+    
Sbjct: 357 DAYASEQIWHYVKKLNAQKPVVVSMSGMAASGAYYMSMGARWIVAQPTTETGSIGIFAAI 416

Query: 139 PYVKPFL-DKLGVSIKSVKSSP-----MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           P     +  KLG+    + ++      M          N    + +Q  VD  Y  F + 
Sbjct: 417 PDFSGLMTQKLGIKFDEIGTNKNSTFSMNNPIPMARPYNEDEAKALQRYVDRGYDLFCQR 476

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           V++ R +  ++   ++ G ++ G +A K+ L+D +G  ++  Q   +    ++   + D+
Sbjct: 477 VADGRKLSVNQVHEVAQGHVFLGTDAIKLKLVDQLGSMDDAIQKAASFAKLKNYYTV-DY 535

Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
           + P N+    L     S+ L++ + L           +
Sbjct: 536 SQPTNWIDQLLGITEDSNSLDEQLRLALGEYYTPFMML 573



 Score = 96.6 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 92/278 (33%), Gaps = 29/278 (10%)

Query: 1   MEFVLKKIKTRYVM------LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI------- 47
           ++ VL  I   ++         L++L  +  S S+        V  + ++G I       
Sbjct: 5   LKNVLATIIGIFLFGSLIGFFGLISLIGMISSKSAGTTLQDNSVLVLKLQGIINEQASDN 64

Query: 48  ------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95
                           E++  I++   D     + +            + I  A+Q  + 
Sbjct: 65  FIGQITGHQINQIGMNEMMSAIKKAKNDKHIQGIYLESGFLSADWATVQEIRGALQDFRK 124

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
               I    E      Y IS A+N +      ++   G+  Q  Y K    K GV  +  
Sbjct: 125 SGKWIIAYGERFNQPTYYISTAANKVYLNPEGMIDWHGIAAQPEYYKDLFAKFGVRFQIF 184

Query: 156 KSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
           K    K+    F+E  ++    + M  +++  +      VS+SR+I   +    +D  + 
Sbjct: 185 KVGKYKSYTETFTEDKMSDANREQMSRIINGLWSEVCTQVSQSRHISTSQLNQYADEIVS 244

Query: 214 T--GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
              G    K   +D +   +E+   +      +    I
Sbjct: 245 LDGGKSLLKKNFVDGLLYADEIKSVVKKRLGLEDDDMI 282


>gi|323699137|ref|ZP_08111049.1| signal peptide peptidase SppA, 36K type [Desulfovibrio sp. ND132]
 gi|323459069|gb|EGB14934.1| signal peptide peptidase SppA, 36K type [Desulfovibrio
           desulfuricans ND132]
          Length = 335

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/280 (24%), Positives = 124/280 (44%), Gaps = 19/280 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSPG 77
             +    +A I +RG +                QEL+  ++    DD   A++V++ SPG
Sbjct: 50  DGEGPGKIALIHLRGFLSTEPAQGMLRSQPSAVQELVNNLKLAEADDQVGAVVVAIDSPG 109

Query: 78  GSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           G+  A + ++  +   K R  KPV+  + ++AAS GY  +  ++ IVA  T++ GS+GV+
Sbjct: 110 GTTTASDVLYHELTAFKQRTGKPVVAAMFDVAASGGYYAALPADWIVAHPTTITGSVGVV 169

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
           F  P +   +DK+GV ++  KS   K   SPF    P+   + Q ++D     F  LV E
Sbjct: 170 FMRPKLNGLMDKVGVDVEVSKSGRDKDMGSPFRPTTPEEEALFQGIIDDMAARFYALVQE 229

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
            R++       +   R++T ++A  +GLID +G  ++ +     L       K+  +   
Sbjct: 230 HRHLTPAHLETVKTARVFTASQALSIGLIDQIGYVQDAFAKARDLAGLDPECKVVTYRRD 289

Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKV----QGLWAVW 291
                     L  +   + ++  +    V     G   VW
Sbjct: 290 MYPDDNPYNTLDSAEPYKPSLLGVDAGFVLPPRAGFCYVW 329


>gi|265983331|ref|ZP_06096066.1| signal peptide peptidase SppA [Brucella sp. 83/13]
 gi|264661923|gb|EEZ32184.1| signal peptide peptidase SppA [Brucella sp. 83/13]
          Length = 239

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 87/198 (43%), Positives = 139/198 (70%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             F      + N PH+A++ I G I +++EL++R++RI+ +D+   +I+ L SPGG+   
Sbjct: 40  FAFYSLRGAKFNQPHIAKVRIEGTIFENEELLKRLDRIAGNDAVKGVILLLDSPGGTTVG 99

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           GEAI+ A++K+  +KPV+T+V  +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + 
Sbjct: 100 GEAIYDAVRKIAKKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 159

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LD LGV ++++KSSP+KAEP+ FS  + +A  M++ ++  SY WFV +V E R   ++
Sbjct: 160 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRGMIMDSYDWFVGIVQERRAFTHE 219

Query: 203 KTLVLSDGRIWTGAEAKK 220
           + L L++G ++TG +A  
Sbjct: 220 QALALANGAVFTGRQALD 237


>gi|32490457|dbj|BAC79152.1| exfoliative toxin [Staphylococcus intermedius]
 gi|195972574|emb|CAR57917.1| exfoliative toxin [Staphylococcus pseudintermedius]
          Length = 330

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 68/263 (25%), Positives = 124/263 (47%), Gaps = 17/263 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDS---------------QELIERIERISRDDSATALIVSLS 74
              D++  +A I + G+I D+               Q  ++++E I  DDS   +++S++
Sbjct: 48  EEGDSNKKIAEIVVEGEIIDTGASGGLFGGGAGYNHQAALKQLETIKNDDSIKGVLLSVN 107

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIG 133
           SPGG  Y  +  ++ I++VK+    I    E  A++G     A  + I A   SL GSIG
Sbjct: 108 SPGGGTYESDEFYQKIKEVKDSGKKIFVQMENLAASGGYYISAPADKIYAGPQSLTGSIG 167

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V+ +       LD LG+   ++KS   K   S   ++  +  +++Q +   S+  FV +V
Sbjct: 168 VISESKDYSELLDNLGIRTNTIKSGAHKDILSSSRKMTDEEREILQSINKDSFDQFVNVV 227

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
            E R +   K   L+DGRI++  +AK  GLID +G +++  +      +     +I  ++
Sbjct: 228 KEGRQMSESKVRELADGRIYSAQQAKSNGLIDAIGYKDKTLKD-LKKAIKVENPEIITFD 286

Query: 254 PPKNYWFCDLKNLSISSLLEDTI 276
           P ++     L   S  + L   +
Sbjct: 287 PEESNLTSFLGMKSFINGLRAEL 309


>gi|294785166|ref|ZP_06750454.1| protease IV [Fusobacterium sp. 3_1_27]
 gi|294486880|gb|EFG34242.1| protease IV [Fusobacterium sp. 3_1_27]
          Length = 578

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 14/236 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLS 74
              + D++  +  I + G I +S+             E +E++     +D   A+++ ++
Sbjct: 295 EGSMTDSNNIIYVIPLEGDIVESEIEVFSGEENINVSETLEKLNIAKENDKIKAVVLRVN 354

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGGSA   + I   ++++   KPV   +  +AAS GY IS  +N I     ++ GSIGV
Sbjct: 355 SPGGSALTSDIIAEKVKELAEEKPVYVSMSSVAASGGYYISANANKIFVDRNTITGSIGV 414

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +   P     +   GV+I+ +                 K    + +     Y  F+ +VS
Sbjct: 415 VSILPDFSKLITDNGVNIEKISDGEYSDLY-SVDSFTEKKYNKIYNSNLKVYEDFLNVVS 473

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
           + R I  +K   +++GRIWTG EA K+GL D +GG  E   +L           + 
Sbjct: 474 KGRKIDKEKLKTIAEGRIWTGDEAIKIGLADEIGGLNETIYALAEDNDMDEYAIVV 529



 Score = 64.6 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 98/281 (34%), Gaps = 32/281 (11%)

Query: 3   FVLKKI-------KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARI----------AIRG 45
           FV+K+I            +  ++   ++                 +           ++ 
Sbjct: 13  FVIKEILSFFIKLFLFLFVAGIIISAIIKSFEEKPTVAIKNKAYVLINLADSYNERLLKS 72

Query: 46  QIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPV 99
            + +   +     ++ IE +S DD    +I+ ++    S    E +   +   +   K +
Sbjct: 73  NLFEDDSINFYTLLQSIENVSYDDRVEGIILKINGDSLSYAQSEELAHELSMARAANKKI 132

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF-QYPYVKPFLDKLGVSIKSVKSS 158
           I     +     YL S A+ I + +  S   +I   F +  Y+K   DK GV    +   
Sbjct: 133 IAYFENVGRKNYYLASYANEIYMPSANSTNVNIYPYFREEFYIKQLADKFGVKFNIIHVG 192

Query: 159 PMKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216
             K+       S ++ +A +    V+D +Y+ F+ +VS +R I  D    +        A
Sbjct: 193 DYKSYMENLASSTMSKEAREDTVRVLDKNYNNFLDVVSLNRKINRDDLDKIIKDGELVAA 252

Query: 217 ---EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
              +     LID     + V   +   G    I  ++++  
Sbjct: 253 SSVDLMNNNLIDKYAYWDNVISMV---GGKDKIITVQEYTK 290


>gi|116515107|ref|YP_802736.1| hypothetical protein BCc_171 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256961|gb|ABJ90643.1| protease IV, a signal peptide peptidase [Buchnera aphidicola str.
           Cc (Cinara cedri)]
          Length = 621

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 122/234 (52%), Gaps = 11/234 (4%)

Query: 34  NSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           NS  +  I   G IE++         + L+  I+    D S  A+I+ ++SPGG+    E
Sbjct: 327 NSNKIKVIISNGIIENNCKRSANLNIENLLNEIDEAKNDSSVKAVILRINSPGGTVKYSE 386

Query: 85  AIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
            I + + ++    KP+I  + ++ AS GY IS A + I+A +T+L GSIG+    P ++ 
Sbjct: 387 IIRKKLLELHKCNKPLIISMGDVCASGGYWISTAGDYIIAHDTTLTGSIGIFAVIPTIEK 446

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L  +G+    +K+     + S F E++ ++ + + D +   Y  F+ +V++SR + Y K
Sbjct: 447 ILSTIGIKQYQIKT-KYYEDFSIFHELSEQSKKSIGDNIIREYKKFITIVAQSRKLSYKK 505

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           T  +S GR+WTG +A+K+GL+D +G  +   +    L   ++   I      K+
Sbjct: 506 THSISQGRVWTGYQAQKIGLVDEIGDLDHAIKKAAQLANIKNYCVIWSKLEKKS 559



 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 92/278 (33%), Gaps = 46/278 (16%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSH-----VEDNSPHVARIAIRGQI----------- 47
           ++KKI     +L  +++ V+             ++N   +  I +   +           
Sbjct: 21  LIKKIFLNIFILLFLSIFVLLIYEIKKKNIFFSKNNKSGILVIDLNQTLKEEPIRNISLY 80

Query: 48  ---------------EDSQELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQ 91
                              E+ ++IE+   D     + ++   S   +    E   + + 
Sbjct: 81  KHHNYFLNFFNWSNNSSVYEITKKIEQAKEDPKIKGIQLNFSDSFTSNQVILEYFGKKLY 140

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           + K     I  + +  + +GY ++  SN I       V   G+     ++K  +D L + 
Sbjct: 141 EFKQSNKPIISIGKNYSQSGYYLASFSNKIFLLPDGSVHINGIANTKIFLKKIIDTLKIH 200

Query: 152 IKSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +   +    K        +  +    ++ Q ++   +  +++ ++ +RN    +     +
Sbjct: 201 LHVFRIGKYKNAVESVLRNSPSKINKKIDQLIIRFKWKKYLQKIASNRNTVLTEIC--PN 258

Query: 210 GRIWT----------GAEAKKVGLIDVVGGQEEVWQSL 237
             I+T             A    L+D +  +  + + L
Sbjct: 259 PNIFTKFFKKKNNNYTKYALYHNLVDKILKKNSIKKYL 296


>gi|332157800|ref|YP_004423079.1| protease IV [Pyrococcus sp. NA2]
 gi|331033263|gb|AEC51075.1| protease IV [Pyrococcus sp. NA2]
          Length = 329

 Score =  119 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 115/240 (47%), Gaps = 3/240 (1%)

Query: 21  TVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGG 78
            +     S +    +  +A + I G I++  + ++I+RI  I  + +   +++ + SPGG
Sbjct: 68  FLRGLIASMNESKGNISIAILPIFGPIDEELALKIIKRIREIRSNRTIGGVLLWIESPGG 127

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
                  I+  ++K+ + KP++      A S  Y I+CA+  I+A   + VGSIGV++ +
Sbjct: 128 YVGPVREIYEELKKLSHLKPIVAYTGGYAYSGAYYIACAAQKIIADPLADVGSIGVIYVH 187

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              + + +  G+ ++  K+ P K   + +  + P+  +++++ + + +  F+ +VSE RN
Sbjct: 188 FNAEKYYENNGIEVEVFKTGPYKDMGADWRGLTPEEREIIKNQIQTYFDDFISVVSEGRN 247

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           +  ++    + GR W   +     L+D +G  +   + L  +   +    +      + +
Sbjct: 248 MTIEEVKKFATGRTWFAKD-VNGTLVDELGDMDLAIRELLKIMGVKKANILVYDIEREKF 306


>gi|260427805|ref|ZP_05781784.1| peptidase, family S49 [Citreicella sp. SE45]
 gi|260422297|gb|EEX15548.1| peptidase, family S49 [Citreicella sp. SE45]
          Length = 326

 Score =  119 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 108/260 (41%), Gaps = 19/260 (7%)

Query: 33  DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
              P VA + ++G I          Q L   +E+  R     A+ + ++SPGGS      
Sbjct: 70  KTKPTVAVVRMQGAIGTGGRMALSDQSLRPLLEKAFRKGKPAAVALEINSPGGSPVQSSL 129

Query: 86  IFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           I   I+++    + PV     ++AAS GY I+ A++ I A  +S++GSIGV+        
Sbjct: 130 IGARIRRLSEETKVPVFAFTEDVAASGGYWIASAADEIWADPSSILGSIGVISAGFGAHV 189

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL + G+  +   +   K+   PF   + + V  +  ++   +  F++ +   R      
Sbjct: 190 FLQRQGIERRVHTAGKSKSMLDPFRPESEEDVARLDRLLGQLHETFIQQIRSRRGDKLAD 249

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              L  G +W G  A  VGL D VG    V +  +         + + +   +  +    
Sbjct: 250 DPDLFTGEVWIGKAACDVGLADGVGHLVPVMKQRFG-----DKVRFRRYEQKRRLFPRL- 303

Query: 264 KNLSISSLLEDTIPLMKQTK 283
                ++L +D +  +++  
Sbjct: 304 ----GATLAQDALGAVEERA 319


>gi|148244822|ref|YP_001219516.1| peptidase S49 [Candidatus Vesicomyosocius okutanii HA]
 gi|146326649|dbj|BAF61792.1| peptidase S49 [Candidatus Vesicomyosocius okutanii HA]
          Length = 319

 Score =  119 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 125/299 (41%), Gaps = 22/299 (7%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHV-------EDNSPHVARIAIRGQI-----EDSQELI 54
           + +  + +L +     +Y+   S         +  SP VA + + G I      D+ E I
Sbjct: 25  RWRIIFSILFVGYFIFIYYIGISENGVLNTALKKESPFVAEVVLSGTIQSSGSIDADETI 84

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGY 112
           E +    + ++A A+I+ ++SPGGS      I++AI ++K    K     V ++ AS  Y
Sbjct: 85  ELLYSAFKLENAKAIILRINSPGGSPVQSSRIYKAIIRLKKQFDKKFYVVVEDVCASGCY 144

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            I+ A++ I A E+S++GSIGV+         + KLG+  +   +   K     FS  N 
Sbjct: 145 YIASAADEIYADESSIIGSIGVIMSSFGAVDAIKKLGIKRRLYTAGKYKGLLDSFSPENE 204

Query: 173 KAV-QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
           K +  +   V+D  +  F+  V   R     K   L  G IW G +A K+GLID +    
Sbjct: 205 KILAHIQIHVLDKLHQNFINAVKAGRGNRLSKHKDLFTGLIWLGQDANKLGLIDGIADTN 264

Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
            V + +  +         +     +      L   SI+ +       +    + G   V
Sbjct: 265 YVAKHIIGI-------DSRVLFEKEKTLLEQLTEASINGIALAISDKLISKNLIGFLQV 316


>gi|110681212|ref|YP_684219.1| S49 family peptidase putative [Roseobacter denitrificans OCh 114]
 gi|109457328|gb|ABG33533.1| peptidase, family S49, putative [Roseobacter denitrificans OCh 114]
          Length = 265

 Score =  119 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 112/260 (43%), Gaps = 19/260 (7%)

Query: 33  DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
              P VA I + G I        + + L   IE+        A+ + ++SPGGS      
Sbjct: 9   KADPTVAVIRLSGVISAAGRGTLNDESLAPVIEKAFARGKPAAVALEVNSPGGSPVQSSL 68

Query: 86  IFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           I   I+++   K  PVI  V ++AAS GY ++ A++ I   E+SLVGSIGV+        
Sbjct: 69  IGARIRRLAEEKDIPVIAFVEDVAASGGYWLAAAADEIYGDESSLVGSIGVISASFGAHD 128

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L + G+  +   +   K+   PF   NP+ V  ++ +++  +  F   V+  R      
Sbjct: 129 LLARQGIERRVYTAGKSKSMLDPFRPENPEDVARLKGLLEDIHGNFKDHVAARRKGKLTD 188

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              L  G +W    A ++GLID +G  + +    +         K +++   K       
Sbjct: 189 DRDLFTGEVWLARRAAELGLIDGIGHLKPMMTERFG-----EKVKFRNYGMRKPLLTRF- 242

Query: 264 KNLSISSLLEDTIPLMKQTK 283
                S +L+DT+  +++  
Sbjct: 243 ----GSRILDDTLHSIEERS 258


>gi|254284422|ref|ZP_04959390.1| signal peptide peptidase SppA, 67K type [gamma proteobacterium
           NOR51-B]
 gi|219680625|gb|EED36974.1| signal peptide peptidase SppA, 67K type [gamma proteobacterium
           NOR51-B]
          Length = 590

 Score =  119 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 121/251 (48%), Gaps = 11/251 (4%)

Query: 38  VARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           VA + I G++           S+ ++ER+ R +      A+++ +++PGGS +A + I  
Sbjct: 304 VAVVPIEGELVPGESIDGFAGSETVLERLRRTAELPGLEAVVLRINTPGGSVFAADVIRE 363

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCA-SNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            +Q+++ +   +       A++G     A ++ IVA  T+L GSIGV   +P  +   D 
Sbjct: 364 GVQELRAQGLTVVVSMAALATSGGYYIAAETDHIVAQPTTLTGSIGVFAAFPTFERLFDY 423

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
            GVS+  V ++ M         ++  +  +++ V+  +Y  F+ +V+E R +  ++   +
Sbjct: 424 AGVSVDGVGTTAMADAFRADRPLSEGSASVIRQVIAGTYVDFLHIVAEGRGMNVEQVAPI 483

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           ++G +WTG++A ++GL+D +GG EE       L       +++      +     L+++ 
Sbjct: 484 AEGIVWTGSDALEIGLVDSMGGLEEAINIAAGLAGL-DRWEVQRMGTAMSPEQRLLQHIG 542

Query: 268 ISSLLEDTIPL 278
            S  +      
Sbjct: 543 RSIGMAGVFSA 553



 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 93/269 (34%), Gaps = 32/269 (11%)

Query: 11  RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------------- 50
              + +L+ +  + F  +  +      V  +   G + +                     
Sbjct: 4   LVTLGALIYMLSIVFDQARPMPIEDNSVLLLQPVGVVVEDLDPLEPLQALLQQDVASEVL 63

Query: 51  -QELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
             +L++ I+  S D   +A+++ L+   G        +  AI + K R   +  V +   
Sbjct: 64  LSDLVDAIDAASEDPRISAMVIDLADTVGPGLSQTLDLITAIDRFKARGKPVIAVGDFYT 123

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167
              YL++  ++ ++      +   G      Y+   LDK+ +++   ++   K+   PF 
Sbjct: 124 QGHYLVASQADEVLLHPKGSLSLTGFGAYNYYLVRLLDKIKLTVHVFRAGDNKSAVEPFL 183

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-----WTGAEAK-- 219
             +++    +++   + S +  +  ++   R +P      +          + G  A+  
Sbjct: 184 RDDMSSTERRVVARWLGSLWQDYTAVIERGRGLPSGSIDRMIADFPALLGQYGGDVAQMS 243

Query: 220 -KVGLIDVVGGQEEVWQSLYALGVDQSIR 247
             +GLID +     +   +  +       
Sbjct: 244 LALGLIDGLANDAAMEARIAEVAGAGRDE 272


>gi|237744193|ref|ZP_04574674.1| protease IV [Fusobacterium sp. 7_1]
 gi|229431422|gb|EEO41634.1| protease IV [Fusobacterium sp. 7_1]
          Length = 578

 Score =  119 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 66/271 (24%), Positives = 119/271 (43%), Gaps = 23/271 (8%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLS 74
             ++E ++  V  I + G I +S+             E +E++     ++   A+++ ++
Sbjct: 295 EENLESSNNVVYVIPLEGDIVESETEVFAGEENINVAETLEKLNIAKENNKIKAVVLRIN 354

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGGSA   + I   I+++ + KPV   +  +AAS GY IS  ++ I     ++ GSIGV
Sbjct: 355 SPGGSALTSDIIAEKIKELASEKPVYVSMSSVAASGGYYISANADKIFVDRNTITGSIGV 414

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +   P     +   GV+I+ +         S  +    K    + +     Y  F+ +VS
Sbjct: 415 VSILPDFSKLITDNGVNIEKISEGEYSDLYSSDT-FTEKKYNKIYNSNLKVYDDFLNVVS 473

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK---- 250
           ++R I  +K   +++GRIWTG EA K+GL D +GG  E    +           +     
Sbjct: 474 KARKIDKEKLKTIAEGRIWTGEEAVKIGLADEIGGLNEAIYGIAEDNDMDEYSIVVAKDK 533

Query: 251 -----DWNPPKNYWFCDLKNLSISSLLEDTI 276
                 +     Y   D K+L    + +D +
Sbjct: 534 FELGNIYRKYSRYIKMDTKDLIKEKIFKDYL 564



 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 10/210 (4%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASA 110
            L++ +E  S DD    +I+ ++    S    E +   +   +   K +I     +    
Sbjct: 84  TLLQSVENASYDDRVEGIILKMNGDSLSYAQSEELAHELSMARAADKKIIAYFENVGRKN 143

Query: 111 GYLISCASNIIVAAETSLVGSIGVLF-QYPYVKPFLDKLGVSIKSVKSSPMKAEPS--PF 167
            YL S A+ I + +  S   +I   F +  Y+K   DK GV    +     K+       
Sbjct: 144 YYLASYANEIYMPSANSTNVNIYPYFREEFYIKKLADKFGVKFNIIHVGDYKSYMENLAS 203

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA---EAKKVGLI 224
           S ++ +A +    ++D +Y+ F+ +VS +R +  D    +        A   +     LI
Sbjct: 204 STMSKEAREDTVRILDKNYNNFLDIVSLNRKLNRDDLDKIIKDGDLVAASSVDLMNNKLI 263

Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           D     + +   +   G    I  I+D+  
Sbjct: 264 DKYAYWDNIISMV---GGKDKIITIQDYTK 290


>gi|154623593|dbj|BAF74800.1| protease IV homologue [Enterococcus faecium]
          Length = 344

 Score =  119 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 64/253 (25%), Positives = 117/253 (46%), Gaps = 14/253 (5%)

Query: 31  VEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSPG 77
              ++  + ++++ G I D+             Q  + ++++I  D +   +++ ++SPG
Sbjct: 58  EGASNKKIVKLSVNGVIADTGESNLFSREQYTHQNFLTQLKKIQEDTALNGVLLEVNSPG 117

Query: 78  GSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           G  Y    I + +  +K    P+ T +   AAS GY IS   + I A E +  GSIGV+ 
Sbjct: 118 GGIYESAEIAKEMANIKKLDIPIYTALKNTAASGGYYISAGPDKISATEETTTGSIGVII 177

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                   L+ LGV+  +  S  +K    P  + + +  +++Q+ V S+Y  FV +V++ 
Sbjct: 178 SGLNYSGLLENLGVTDATYTSRALKDMMPPQHKPSEEENKVIQEFVMSAYDRFVNVVAKG 237

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           RN+  +    L+DGRI+ G +A + GL+D +G  E+   SL           I+  N   
Sbjct: 238 RNMDTNAVKELADGRIYDGNQAVENGLVDQIGYSEDALDSLKKEKKLTDATVIEYKNDTT 297

Query: 257 NYWFCDLKNLSIS 269
            +    L N    
Sbjct: 298 GFASSWLGNKIAE 310


>gi|163791443|ref|ZP_02185852.1| hypothetical protein CAT7_03184 [Carnobacterium sp. AT7]
 gi|159873307|gb|EDP67402.1| hypothetical protein CAT7_03184 [Carnobacterium sp. AT7]
          Length = 345

 Score =  119 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 121/240 (50%), Gaps = 15/240 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSP 76
              D+S  +  +++ G I   Q               ++++E+I  DD+   +I+S++SP
Sbjct: 58  DAGDSSKRIVVLSVDGTILAGQTASFTGDSGYDHNGFLQQLEQILVDDTIKGIILSVNSP 117

Query: 77  GGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG  Y    I   + +++ +  KP+   +  MAAS GY IS  +  I AAE +L GSIGV
Sbjct: 118 GGGTYESAQIKDKLVEIQEKTKKPIYVSMGSMAASGGYYISAPAEKIFAAEETLTGSIGV 177

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +     +    +K+G+   ++KS   K   S   E+  +   ++Q +V++S+  FV ++ 
Sbjct: 178 IMSGTNLTELFEKIGIDDTTIKSGKFKDIGSTTREMTEEDAAILQTMVNTSFDRFVDVIV 237

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           + R +  D    ++DGRI+ GA+A ++GL+D +G QE+  +++      +         P
Sbjct: 238 KGRGMDEDVVRTIADGRIYDGAQAVELGLVDEIGYQEDALETIQKDYKLEDAEIFSYQTP 297


>gi|262039165|ref|ZP_06012485.1| signal peptide peptidase SppA, 67K type [Leptotrichia goodfellowii
           F0264]
 gi|261746781|gb|EEY34300.1| signal peptide peptidase SppA, 67K type [Leptotrichia goodfellowii
           F0264]
          Length = 595

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 63/265 (23%), Positives = 126/265 (47%), Gaps = 15/265 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQE----------LIERIERISRDDSATALIVSLSSPGG 78
                +   +A I   G I  ++E          + E+++ +S+      +++ ++SPGG
Sbjct: 303 EEQNQDKGTIAVIFAEGPIVYNEEAQGIYISPDNMAEKLKELSKIKDLKGVVLRVNSPGG 362

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           SA A E I++ + K+    PV   + E+AAS GY IS +   + A + ++ GSIGV+  +
Sbjct: 363 SALASEMIYQMLSKI--NVPVYVSMSEVAASGGYYISMSGKKVFANDATITGSIGVVSMF 420

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P      +K GV+  S+          PF  ++ ++   + + ++++Y  F   VS++RN
Sbjct: 421 PKFYNAQNKYGVTSNSISKGKYTDTFDPFVPLSAESRNKIIESMNATYDEFKSRVSKNRN 480

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           +        + G+IW G+EAKK+ L+D +   +E  ++L          ++++    K++
Sbjct: 481 MAPQVLENYAQGKIWLGSEAKKINLVDGIATLDETVKTLARDLNLGDNYRVENIYAKKDF 540

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTK 283
                    +SS + +   L  Q +
Sbjct: 541 KETLKL---LSSYIFEKFQLTSQLE 562



 Score = 70.8 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 99/244 (40%), Gaps = 8/244 (3%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
           +++  +E I  +D+   +I++L     S+   E I + +Q++KN+   +        +  
Sbjct: 89  DVLNSLEDIKNNDNIKGVIINLDQTNISSVKSEEISKKLQEIKNKNKKVYAFGAYMDNNN 148

Query: 112 YLISCASNIIVA--AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE--PSPF 167
           Y ++  +N I+   + +  V   G  +   Y K  L  +GV ++ V+    K+       
Sbjct: 149 YPLASVANEIIMVPSASGSVSLAGYHYSDLYYKKLLSNVGVDMEVVRIGDFKSYGENYTS 208

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS---DGRIWTGAEAKKVGLI 224
             ++      +  +++S ++ F+  VS++R +  +K        D    T + A+    +
Sbjct: 209 DTMSSGLRNELTRILESRFNSFLDKVSKARRLDKNKLNADILNGDNTNLTPSAARDKNFV 268

Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
           D +    ++   L  +  D  +     +           ++    +++    P++   + 
Sbjct: 269 DTLEYFNDLMTKL-QINEDNIVDIYDYYADNGKRIEEQNQDKGTIAVIFAEGPIVYNEEA 327

Query: 285 QGLW 288
           QG++
Sbjct: 328 QGIY 331


>gi|124003560|ref|ZP_01688409.1| signal peptide peptidase SppA, 67K type [Microscilla marina ATCC
           23134]
 gi|123991129|gb|EAY30581.1| signal peptide peptidase SppA, 67K type [Microscilla marina ATCC
           23134]
          Length = 573

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 113/249 (45%), Gaps = 10/249 (4%)

Query: 27  WSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPG 77
           W    + ++  +A I   G+I           + ++++ + R  +  S  A+++ ++SPG
Sbjct: 278 WEKQQKKSNHRIAVIVADGEIRSGNGRDGIVGAAKIVKALRRARKSKSVKAIVLRVNSPG 337

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           GSA A + ++R I   +  KPVI  + ++AAS GY I+ A + IVA   ++ GSIG+   
Sbjct: 338 GSALASDIMWREIHLTRKVKPVIASMSDVAASGGYYIAMACDTIVAQPNTITGSIGIFSI 397

Query: 138 YPYVKPFLDK-LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
           Y  +  F    LG++   V +    A   P         Q++Q  ++  Y  F    ++ 
Sbjct: 398 YFNLAAFQKNKLGITNDYVNTGKFSALGDPSYPFTEADRQILQRSIERGYESFTSKAAKD 457

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R +   +   ++ GR+W G EAK+ GL+DV+G   +                   + P +
Sbjct: 458 RGMSLAELKSVASGRVWAGNEAKQNGLVDVLGSFNDALAIAAKKAKLSKKDYRLWFLPVE 517

Query: 257 NYWFCDLKN 265
                 +K+
Sbjct: 518 KPLIDKIKD 526



 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 97/260 (37%), Gaps = 25/260 (9%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ----------------------EL 53
            ++       S SS +  +   V  + + G I +                         +
Sbjct: 5   LVIFFIFTLVSSSSTITTDQKSVLLLKLNGNITELDIDNPVPSLDNPLNPVVDGTGLMGI 64

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
           +  IE+   D +   +++ L S G    + + +  A+   K  K  +    E  +   Y 
Sbjct: 65  LHNIEKAKNDPNIAGIVLHLQSIGAGFASLKELREALNDFKQSKKFVWAYGEYLSEGAYY 124

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVN 171
           ++  +N I    T  +   G+  Q  + K   DKL +  +  +    K+   P+   +++
Sbjct: 125 LTSVANKIYLNPTGSLEFNGLSAQRTFYKGAFDKLDIKPEIFRVGTYKSAVEPYMTDKMS 184

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + +  +  ++S Y  +++ ++ SR +   +       G + + A+A K  LI  +G  
Sbjct: 185 EASRRQTESYLNSIYDLYLKDIATSRKVSLARLTQASDSGLVQSPADALKYQLITKIGYY 244

Query: 231 EEVWQSLYALGVDQSIRKIK 250
           +E+   +         +KIK
Sbjct: 245 DELEAEVKQRLDLNENQKIK 264


>gi|114320584|ref|YP_742267.1| peptidase S49 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226978|gb|ABI56777.1| peptidase S49 [Alkalilimnicola ehrlichii MLHE-1]
          Length = 311

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 120/287 (41%), Gaps = 15/287 (5%)

Query: 8   IKTRYVMLS-LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ----ELIER-IERIS 61
           I  +   L+ LV L + + S         PH+A++ + G I   +    EL+ + ++   
Sbjct: 31  IFFKLAFLAYLVALLIPFASGFLFERPTGPHLAKVNVTGLISADELASAELVNQGLQAAF 90

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLISCAS 118
               A  +++ ++SPGGS      I+  I +++ +     V   + ++ AS  Y I+ A+
Sbjct: 91  NAPRAEGVVLYINSPGGSPVQSNRIYSEINRLREQHQGMAVYAVIDDVGASGAYYIASAA 150

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I     S+VGSIGV+         ++KLGV  +   +   KA   PF+         M
Sbjct: 151 DEIFVNPASVVGSIGVISGGFGFTEAMEKLGVERRIYTAGENKAFLDPFAPEEEAHQAHM 210

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           + +++  +  F+  V   R         L  G IWTG  + ++GL D  G    V + + 
Sbjct: 211 ERLLEEVHSQFIADVRAGRGERLADDDRLFSGLIWTGESSVELGLADGFGDIAHVAREVA 270

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
                  + ++ D++            L +S     T  L +  +++
Sbjct: 271 G------VDQVLDYSRHPGLLRFITDRLGMSIGKAITRALTEGHELR 311


>gi|259418110|ref|ZP_05742029.1| peptidase S49 [Silicibacter sp. TrichCH4B]
 gi|259347016|gb|EEW58830.1| peptidase S49 [Silicibacter sp. TrichCH4B]
          Length = 298

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 116/274 (42%), Gaps = 11/274 (4%)

Query: 11  RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRD 63
           RY++       +   S     +   P VA + + G I        +   L   +ER  + 
Sbjct: 20  RYLVSGGWAFYIGAMSVRLPFKKRPPLVAVVRLSGAIGMAGRGSLNDTTLAPVLERAFKK 79

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNII 121
               A+ + ++SPGGS      I   I+++      PV   V ++AAS GY ++ A++ I
Sbjct: 80  GKPQAVALEINSPGGSPVQSALIGARIRRLAEEHDVPVFAFVEDVAASGGYWLAAAADEI 139

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
            A  +S+VGSIGV+        FL + G+  +   +   K+   PF   N   V  ++ +
Sbjct: 140 FADASSVVGSIGVISSGFGAHIFLARQGLERRVHTAGESKSMLDPFRPENEGDVARLKVL 199

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           ++  +  F+  V+E R         L  G +W    A  +GLID +G  + V Q  +   
Sbjct: 200 LNDIHANFIEHVTERRGTKLTSDEKLFTGEVWLARRAIGLGLIDGIGHLKPVLQERFGKK 259

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
           V      +K   P  + +   +   +++++ E  
Sbjct: 260 VRLRRYGVK--KPFLSRFGLSMAEDALAAVEERA 291


>gi|118487709|gb|ABK95679.1| unknown [Populus trichocarpa]
          Length = 625

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 63/264 (23%), Positives = 114/264 (43%), Gaps = 16/264 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSL 73
           W+  +      +A I   G I                ++LIE+I +        A I+ +
Sbjct: 314 WTLGLTGGRDLIAIIRASGSISRVKSPLSLSGSGIIGEQLIEKIRQARESKKYKAAIIRI 373

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
            SPGG A A + ++R I+ +   KPVI  + ++AAS GY ++ A++ IVA   +L GSIG
Sbjct: 374 DSPGGDALASDLMWREIRLLAESKPVIASMSDVAASGGYYMAMAADTIVAENLTLTGSIG 433

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKA-EPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           V+     +    +K+G + + +          +    + P   ++      ++Y  F   
Sbjct: 434 VVTGKFSLGKLYEKIGFNKEIISRGKYAELLAADQRPLRPDEAELFAKSAQNAYEQFRDK 493

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--K 250
            + SR++P DK   ++ GR+WTG +A   GL+D +GG                 R++   
Sbjct: 494 AAFSRSMPVDKMEEVAQGRVWTGQDAASRGLVDAIGGFSRAVAIAKQKANIPQDRQVMLV 553

Query: 251 DWNPPKNYWFCDLKNLSISSLLED 274
           + + P       L  +  S +  +
Sbjct: 554 ELSRPSPTLPEILSGIGSSVVGAE 577



 Score = 42.3 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 59/168 (35%), Gaps = 4/168 (2%)

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDS 184
           +     G   Q  ++    + +G+     +    K+  +      ++ +  +M+  ++D+
Sbjct: 176 AYFSFYGFTVQAAFLAGVFENVGIQPDVQRIGKYKSAGDQLTRKSMSKENCEMLTAILDN 235

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            Y  ++  VS ++    +      +  ++     K+ GLI  +   +EV   L      Q
Sbjct: 236 IYGNWLDKVSSTKGKKIEDMKNFINEGVYKVERLKEEGLITNMHYDDEVISMLKEKVGVQ 295

Query: 245 SIRKI--KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
             + +   D++         L       L+         ++V+   ++
Sbjct: 296 KDKVLPMVDYSKYSRVRNWTLGLTGGRDLIAIIRASGSISRVKSPLSL 343


>gi|312283239|dbj|BAJ34485.1| unnamed protein product [Thellungiella halophila]
          Length = 682

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 65/264 (24%), Positives = 114/264 (43%), Gaps = 16/264 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSL 73
           W+  +      +A I   G I               +++LIE+I  +       A I+ +
Sbjct: 370 WTLGLSGGRDQIAIIRAGGSISRVKGPLSTPGSAIIAEQLIEKIRSVRESKKYKAAIIRI 429

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
            SPGG A A + ++R I+ +   KPVI  + ++AAS GY ++ A+N IVA   +L GSIG
Sbjct: 430 DSPGGDALASDLMWREIKLLAESKPVIASMSDVAASGGYYMAMAANTIVAENLTLTGSIG 489

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-SEVNPKAVQMMQDVVDSSYHWFVRL 192
           V+     +    +K+G + +++                 P+  ++       +Y  F   
Sbjct: 490 VVTARFTLAKLYEKIGFNKETISRGKYAELLGAEERPFKPEEAELFGKSAQHAYQLFRDK 549

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--K 250
            + SR++P DK   ++ GR+WTG +A   GL+D +GG                 +K+   
Sbjct: 550 AALSRSMPVDKMEEVAQGRVWTGKDAHSRGLVDALGGLSRAIAIAKKKANIPLHKKVTLV 609

Query: 251 DWNPPKNYWFCDLKNLSISSLLED 274
           + + P       L  +  S +  D
Sbjct: 610 EISRPSTSLPDILSGIGSSVIGVD 633



 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 93/268 (34%), Gaps = 17/268 (6%)

Query: 35  SPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVSLSSPGGSAYAG 83
              V  + +RGQI D             ++ E + + + D     + + +          
Sbjct: 129 KGSVLTMTLRGQISDQLKSRFSSGLSLPQISENLVKAAYDPRIAGVYLHIEPLSCGWGKV 188

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           E I R I   K     I     +     Y + CA N + A  ++     G+  Q  ++  
Sbjct: 189 EEIRRHILDFKKSGKFIVGYINICGLKEYYLGCACNELYAPPSAYSFLYGLTVQASFLGG 248

Query: 144 FLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
             +K+G+  +  +    K+  +      ++ +  +M+  ++D+ Y  ++  VS+S     
Sbjct: 249 VFEKVGIEPQVQRIGKYKSAGDQLSRKNISEENYEMLSVLLDNIYANWLDGVSDSTGKQR 308

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK----N 257
           +      +  ++   + K+ GLI  +   +EV   L      +  +K+   +  K     
Sbjct: 309 EDVESFINQGVYEIEKLKEEGLIKDIRYDDEVISMLKERLGVEKDKKLPTVDYKKYSGVK 368

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
            W   L        +      + + K  
Sbjct: 369 KWTLGLSGGRDQIAIIRAGGSISRVKGP 396


>gi|257468386|ref|ZP_05632480.1| protease IV [Fusobacterium ulcerans ATCC 49185]
 gi|317062659|ref|ZP_07927144.1| protease IV [Fusobacterium ulcerans ATCC 49185]
 gi|313688335|gb|EFS25170.1| protease IV [Fusobacterium ulcerans ATCC 49185]
          Length = 584

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 12/250 (4%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQ---------IEDSQE---LIERIERISRDDSA 66
           +         S        +A I   G          I  +     LIE I +  +DD  
Sbjct: 294 SFLSKNSLLGSSTNKRKDKIALIYAEGTMYMDSPSGGISGNTTPNVLIEEINKALKDDGV 353

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
             +++ ++SPGGSA +   I   I +    KP+   +  +AAS GY ++ +   I A + 
Sbjct: 354 KGIVLRINSPGGSALSANIISNKIIEANKIKPIYVSIGGVAASGGYYLAASGEKIYADKE 413

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           SL GSIGV+   P +K  L  + +++  VK        S   + +      +       Y
Sbjct: 414 SLTGSIGVVSIIPNIKKMLGNVSINVDEVKKGEYSDIYSMVKDFDADKRDKLYASNLKVY 473

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
           + F+  VS  R +       ++ G++W G EA ++GL+D +GG E+  + L         
Sbjct: 474 NEFIDTVSFGRKLNRQHVEKIAQGKVWLGEEALELGLVDEIGGLEDTVKGLADDLKLVEY 533

Query: 247 RKIKDWNPPK 256
             ++  N P 
Sbjct: 534 DTVEIINAPN 543



 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 101/288 (35%), Gaps = 33/288 (11%)

Query: 3   FVLKKIKTRYV-MLSLVTLTVVYFSWSSHVEDNSPHVARIA------------------- 42
           FV+K+I + ++     + +     ++ +        V  I                    
Sbjct: 17  FVIKEIFSFFIKAFLFLVVIFSIVAFFAKTTLEKDKV-VIEKGSYIEVDLSKEYKEKGKN 75

Query: 43  ----IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
               +RGQ  +   +++  + + RD +   +++ L +   ++   E + + +  +K  K 
Sbjct: 76  LPGFLRGQDTNFFSMLKTFDYLERDSNIKGVVLKLDNLSLNSAQVEELGKKLDSLKKNKK 135

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSL--VGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
            +     MA +  Y ++  S+ I         V   G   +  Y K   D++G+    + 
Sbjct: 136 EVYSYMTMADNRNYSLAIKSDHIFMPPAMSAPVNITGYYGELMYYKLLADRMGIEFNVIH 195

Query: 157 SSPMKAE--PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIW 213
               KA         ++ +  + ++ + +  Y  FV  ++  R + +D     + +G + 
Sbjct: 196 VGDYKAYGENLTKEHISKEYKENIERMYNKKYANFVNNITVERKVNHDFINEKILNGDLM 255

Query: 214 TGA--EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
                + KK+ LID     E   + +   G   S      +    +  
Sbjct: 256 ASEPNQMKKLNLIDEFMYYEN-LKQVIGEGKLLSFESYNSFLSKNSLL 302


>gi|83945357|ref|ZP_00957705.1| probable proteinase [Oceanicaulis alexandrii HTCC2633]
 gi|83851191|gb|EAP89048.1| probable proteinase [Oceanicaulis alexandrii HTCC2633]
          Length = 281

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 111/256 (43%), Gaps = 18/256 (7%)

Query: 34  NSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           + P V  I + G I            Q + ++IE+      A+A+ + ++SPGGS     
Sbjct: 25  DKPVVPVIRLEGVIMSGGRNANALNLQRVEKQIEKAFSMTDASAVALLINSPGGSPVQSR 84

Query: 85  AIFRAIQKVKNRKPVIT--EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            I   I+ + N K         ++AAS GY ++ A++ I     +++GSIGV+       
Sbjct: 85  LIHERIRALANEKDKAVLAFCEDVAASGGYFLAVAADEIFVDPATIIGSIGVINAGFGFT 144

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY- 201
             ++KLGV  +   +   K    PFS       + M+ ++++ +  F+ LV   R     
Sbjct: 145 EAMEKLGVERRVKTAGKSKLIADPFSPETDAQKERMERLLNTVHGQFIELVKSRRGEKLN 204

Query: 202 -DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
             +   L DG ++TG EA + G+ D +G    V ++ +         ++K ++P +    
Sbjct: 205 PQEGEELFDGSVFTGTEALQNGIADEIGDLRSVVRARFG-----EDVRVKVFSPARQGPL 259

Query: 261 CDLKNLSISSLLEDTI 276
             L   ++  +    +
Sbjct: 260 SRLFGAALDGVELRAV 275


>gi|225569105|ref|ZP_03778130.1| hypothetical protein CLOHYLEM_05185 [Clostridium hylemonae DSM
           15053]
 gi|225161904|gb|EEG74523.1| hypothetical protein CLOHYLEM_05185 [Clostridium hylemonae DSM
           15053]
          Length = 325

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 66/283 (23%), Positives = 127/283 (44%), Gaps = 20/283 (7%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------ELIERIERISRDDSATA 68
           +          NS ++A + + G I++                  +E I+ +  D   T 
Sbjct: 41  ILTGGYELNAPNSDYIAVVKVEGTIQEQTASSLFETAEGYQHTTTMEYIDFLMSDSDNTG 100

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAET 126
           +++ + SPGG+ Y  E +++ + + K+   +P+   +   AAS GY +S A++ I A   
Sbjct: 101 ILLYVDSPGGTVYESEELYQKLNEYKDATGRPIWGYMAHYAASGGYYVSMAADNIYANPN 160

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           ++ GSIGV+     +    +KLG+   S+ S   K      S+++   + + Q  VD S+
Sbjct: 161 TVTGSIGVIMAGYDMSGLYEKLGIRYVSITSGKNKDS----SKLDEDQIAIYQTQVDESF 216

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
             FV +V++ R++  D+   L+DGR +T  +AK+ GLID +   E++   + +       
Sbjct: 217 GRFVDIVADGRDMSSDEVKKLADGRTYTAKQAKENGLIDNISLYEDIKADMGSELGTNVF 276

Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
            ++K         F  +K L   S  +       + +  GL  
Sbjct: 277 YELKSKTSALASLFGSVKELVPKSEAQVLTETASEKENGGLMY 319


>gi|13540860|ref|NP_110548.1| secreted serine protease (ClpP class) [Thermoplasma volcanium GSS1]
 gi|14324243|dbj|BAB59171.1| proteinase IV [Thermoplasma volcanium GSS1]
 gi|215414354|emb|CAT00893.1| signal peptide peptidase-like protein [Thermoplasma volcanium GSS1]
          Length = 230

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 4/230 (1%)

Query: 37  HVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           ++ RI I G I     + L   ++      S   LI+  +S GG A + + I   ++K++
Sbjct: 2   YLLRINIEGTINYGLYKYLYPALKAAEGKKSIAGLILVFNSGGGDAASSQLIHDLVKKIR 61

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
            +KPV +    + AS  Y I+ AS  I A +TSL+GSIGV+   P VK  ++K+GV +  
Sbjct: 62  KKKPVYSLALGICASGAYWIASASTKIYAIDTSLIGSIGVISIRPNVKKLMEKIGVDVMV 121

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
            KS   K   SPFSE N +   + Q ++D  +  F R V+E R IP +K   +++G +++
Sbjct: 122 YKSGKYKDMTSPFSEPNEEEKSVYQRLLDDIFEKFKRSVAEDRGIPSEKIDEIANGMVYS 181

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
              A   GLID +   +++   L          K+K++   K      L 
Sbjct: 182 AKMAADNGLIDRIANYDDLVSDLTKEVG--KRLKVKEFYIRKPLLQRLLG 229


>gi|332187455|ref|ZP_08389193.1| signal peptide peptidase SppA, 67K type [Sphingomonas sp. S17]
 gi|332012616|gb|EGI54683.1| signal peptide peptidase SppA, 67K type [Sphingomonas sp. S17]
          Length = 620

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 65/258 (25%), Positives = 118/258 (45%), Gaps = 10/258 (3%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSA 66
           S  T+    +  ++ +      +  + I G I D            + + +         
Sbjct: 287 SFRTIGYDAWVRANPLPSKGDAIGVLTIAGNIVDGDAGPGTAAGDTISKALLDGLAKKKL 346

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAE 125
            AL+V + SPGGS  A E I +AI + K +K PV+  +  +AAS GY +S  ++II A  
Sbjct: 347 KALVVRVDSPGGSVLASEQIRQAILEAKRQKLPVVVSMGGLAASGGYWVSTPADIIFAEP 406

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
            ++ GSIG+    P  +  L K+GV+   VK++P+  +P       P    ++Q  +++ 
Sbjct: 407 GTITGSIGIFGLIPSFENTLAKIGVTTDGVKTTPLTGQPDVLGGFTPMLDTILQAGIENG 466

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  F+  V++SR++  +K   ++ GR+W G  A+++GLID  G   +             
Sbjct: 467 YRQFLTRVAQSRHMTPEKVDTIAQGRVWDGGTARQIGLIDRFGNLSDAVAEAARRAKLDP 526

Query: 246 IRKIKDWNPPKNYWFCDL 263
                ++   K  +  +L
Sbjct: 527 ANIHAEYLEKKPGFAAEL 544



 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 89/274 (32%), Gaps = 30/274 (10%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------- 50
           +K +     ML    L     +     +  S     + + G + +               
Sbjct: 11  IKDLLVLVAMLLFFGLIFAALNARPGTKAISDGALLLKLDGPVVEQPETVAPFAMLSGRG 70

Query: 51  -------QELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRKPVITE 102
                  ++++  I+    D     L++ L + GG+   A + +  A+ + +     +  
Sbjct: 71  SPRQFRLRDVVRAIDAARDDARVKVLVLDLDAFGGAYPAAIQEMGDALARFRKGGKPVLT 130

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
                    Y ++  ++ I          +G      Y K  +DKLGV+    +    K+
Sbjct: 131 YATAYTDGAYRLAAHASEIWVNPLGGTLFMGPGGNQLYYKGLIDKLGVTAHVYRVGKFKS 190

Query: 163 EPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESR------NIPYDKTLVLSDGRIWT 214
              P+  ++ +P A    Q +  + +  +   V+++R               +       
Sbjct: 191 FVEPYIRTDQSPDARAASQALYGTLFAQWRESVAKARPKAQIDGFLTQPDRAVLAANGNI 250

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                K GL+D +G +    + +  +   ++ + 
Sbjct: 251 AEANLKAGLVDRLGDRMAFGKRVAEIAGVENGKP 284


>gi|119472416|ref|ZP_01614534.1| protease IV, a signal peptide peptidase [Alteromonadales bacterium
           TW-7]
 gi|119444938|gb|EAW26236.1| protease IV, a signal peptide peptidase [Alteromonadales bacterium
           TW-7]
          Length = 621

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 69/258 (26%), Positives = 126/258 (48%), Gaps = 12/258 (4%)

Query: 36  PHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             VA +  RG I D +              + +   DD   A+++ + S GGS +A E I
Sbjct: 323 EKVAVVVARGTIVDGERRAGEIGGDSTAALLRKARLDDKVKAVVLRIDSGGGSMFASEVI 382

Query: 87  FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
              +  +K   KPVI  +  +AAS GY I+ A+N I AA +++ GSIGV   +   +  L
Sbjct: 383 RAEVLALKAAGKPVIASMSSVAASGGYWIASAANEIWAAPSTITGSIGVFGTFMTFENTL 442

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV    V ++ M    S    +N K  Q++Q  V+ +Y  F+ +V+++R +  ++  
Sbjct: 443 SKIGVYSDGVATTEMAG-FSVTRPLNEKMAQVIQMSVEEAYGRFLNVVAQARGMTPEEVD 501

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            ++ GR+W  ++A ++GLID +G +++   +  AL        +K      +     L++
Sbjct: 502 AIAQGRVWIASQALELGLIDKLGDKQDAIDAAAALAKL-ENYDVKTITQDLSPQEKMLQD 560

Query: 266 LSISSLLEDTIPLMKQTK 283
           +  S+ L+  + L  +  
Sbjct: 561 IFGSASLKSMLGLQTKAP 578


>gi|166032602|ref|ZP_02235431.1| hypothetical protein DORFOR_02317 [Dorea formicigenerans ATCC
           27755]
 gi|166026959|gb|EDR45716.1| hypothetical protein DORFOR_02317 [Dorea formicigenerans ATCC
           27755]
          Length = 325

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 117/286 (40%), Gaps = 20/286 (6%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDS 65
           +T +             ++  + + G I++  +               ++ I+ +  D  
Sbjct: 38  VTTMLAGELEFDPPADDYIGVVNVVGTIQEQTQSSVLDTSSGYQHNTTMDYIDNLMDDSD 97

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVA 123
              +++ + SPGG+ Y  E +   + + K    +P+ T +   AAS GY+ S   + I A
Sbjct: 98  NKGILLYVDSPGGAVYESEELHDKLIEYKETTGRPIWTYMAHYAASGGYMTSVTGDKIYA 157

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
            + ++ GSIGV+     +    +KLG+   S+ S   K      S++  + V + Q  VD
Sbjct: 158 NKNTVTGSIGVIMSGYDMSGLYEKLGIRYVSITSGVNKDS----SKLTDEQVAIYQSQVD 213

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
             Y  FV +V++ R++  D+   L+DGR +T  +AK  GLID +   ++V   + +    
Sbjct: 214 ECYQEFVNIVADGRDMSADQVKALADGRTYTAKQAKANGLIDEIATYQDVMNQMASELGV 273

Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                           F   + L   S  +      ++ +   L  
Sbjct: 274 DEFYTPSSEESILAAIFSKAEKLVPKSEAQILKETAEEKESGVLMY 319


>gi|319406065|emb|CBI79695.1| protease [Bartonella sp. AR 15-3]
          Length = 275

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 119/271 (43%), Gaps = 18/271 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQELIER----------IERISRDDSATALIVSLSSPGGSA 80
              N+  +  + ++G I  S  L+ R          +++      A A+ + ++SPGGS 
Sbjct: 5   FRSNTVQIPVVRLQGAIISSNSLMSRTLSLARSASLLDKAFSYKKAPAVALIINSPGGSP 64

Query: 81  YAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
                IF+ I+ + N K     T V ++AAS GY+I+CA + I A  +S+VGSIGV+   
Sbjct: 65  VQSRLIFQRIRDLANEKNKQVFTFVEDVAASGGYMIACAGDEIFADPSSIVGSIGVVSAS 124

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                 L K+GV  +   +   K    PF       V  ++ +    +  F+ LV E R 
Sbjct: 125 FGFPELLKKIGVERRVYTAGKNKVTLDPFQPEKKTDVDHLKSLQLEVHQTFIDLVKERRM 184

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
                   +  G  W+G +  ++GLID +G    V +  +      +  K++  +PPK+ 
Sbjct: 185 SKLSDDPNIFTGMFWSGKKGVELGLIDELGDVRSVIKKRFG-----NNAKLRLISPPKSL 239

Query: 259 WFCDL-KNLSISSLLEDTIPLMKQTKVQGLW 288
               +   +S  ++      +M   + + LW
Sbjct: 240 LSSKVHLGISTDTIYTAVDGVMMAAEERVLW 270


>gi|126651359|ref|ZP_01723566.1| SppA [Bacillus sp. B14905]
 gi|126591888|gb|EAZ85971.1| SppA [Bacillus sp. B14905]
          Length = 337

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/261 (25%), Positives = 123/261 (47%), Gaps = 16/261 (6%)

Query: 30  HVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSLSSP 76
             ++    +A + + G I+D              Q  +++++ I  DD+   +++S++SP
Sbjct: 54  EGDNYDKRIAYLKVDGTIQDIGSSSLWQPVAYDHQFFLDQLDNILYDDTIQGIVLSVNSP 113

Query: 77  GGSAYAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG       I++ + K+K  + +     +  MAAS GY IS  ++ I A   ++ GSIGV
Sbjct: 114 GGGVKESAEIYKKLLKIKEERQIPIYVSMDSMAASGGYYISAPADKIFAHRDTITGSIGV 173

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           + Q    +   +K+GV  ++ KS   K   SP  +V P+   MMQD+++ +Y  FV +V 
Sbjct: 174 IMQSINYQALAEKVGVKFETFKSGEHKDMLSPMRDVTPEERAMMQDMINETYEEFVDIVE 233

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           + RN+       ++DGRI  G +A + GL+D +G +E    +L A    +    + ++  
Sbjct: 234 QGRNMSEADVKKVADGRILGGTKALEAGLVDEIGDEEAAIAALRADFGLEDAA-LFEYAY 292

Query: 255 PKNYWFCDLKNLSISSLLEDT 275
               W   +     S      
Sbjct: 293 DMGGWQSYVGMKIGSMFGPSA 313


>gi|51246051|ref|YP_065935.1| proteinase IV [Desulfotalea psychrophila LSv54]
 gi|50877088|emb|CAG36928.1| related to proteinase IV [Desulfotalea psychrophila LSv54]
          Length = 606

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 113/259 (43%), Gaps = 12/259 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSL 73
           +            P +A     G+I           S+ LI  I+    D++  AL++ +
Sbjct: 306 LATIPPREYSSEKPTIAVAIAEGKILPGLQPAGVIGSESLIRIIKEARDDENIKALVLRI 365

Query: 74  SSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           +S GGSA+A E I + +   K + K +I  +  +AAS GY IS  ++ I A+  ++ GSI
Sbjct: 366 NSGGGSAFASELIRQELLAFKAKGKTLIVSMGRLAASGGYWISADADQIWASPATITGSI 425

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           G+    P  +  L  LG+    V +SP+    +    +       +Q  +   Y  F+ +
Sbjct: 426 GIFAAIPTFEKSLAHLGIYCDGVGTSPLAGATNISKPLTEPIKAALQISIKHGYRQFINI 485

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           VS  R I  +K   ++ G +++G +A ++GL+D +G   +  ++       +    I  +
Sbjct: 486 VSIGRGIEPEKVEAMAQGHVYSGKKALQLGLVDKLGNLSQAIEAAAIEAGIKDYNLI--Y 543

Query: 253 NPPKNYWFCDLKNLSISSL 271
              +      +  L  + L
Sbjct: 544 LEKELSLQERVLQLFSAGL 562



 Score = 80.0 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/343 (13%), Positives = 121/343 (35%), Gaps = 57/343 (16%)

Query: 3   FVLKKIKTR-------------YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED 49
           F++K  K               +    ++  ++V F         S  +  + + G I +
Sbjct: 5   FIMKIFKFFIKTLNILRLLILNFFFWGIIIFSLVLFINKEEATLESNSILLLNLNGNIVE 64

Query: 50  S-------------------------QELIERIERISRDDSATALIVSLSSPGGSAYAG- 83
                                     +++I  IE+ ++D    ++ +  +  G + +   
Sbjct: 65  EKTALSPLTGLAGDYLNRAPKQEMRLRDIIRVIEQAAKDPKIVSIQLDTTKMGNAGFNSL 124

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           + I +A+   K  K  I  + +  +  GY ++  ++ I+      VG  G+     Y K 
Sbjct: 125 KDISKALDLFKKSKKKIIAIQDNYSQKGYYLAAHADTIIMNPVGFVGVHGLSSYRLYFKR 184

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
            +DKL ++         K+   PF  + ++ +  +  +D +   +  +   +   R++  
Sbjct: 185 AIDKLFINYNVFLVGDYKSALEPFTRNSMSGRDKEQTRDWLTDLWGIYRNDIIAQRDLSD 244

Query: 202 DKT---------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
                        +L++    +   A + GL+D +  + +V   L  L  +       D+
Sbjct: 245 ANMLYNYTHNLPELLAEVGGDSAKLAVQAGLVDKLLQRHQVSPYLKELSYNPENT--VDF 302

Query: 253 NP-----PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
           N      P   +  +   ++++      +P ++   V G  ++
Sbjct: 303 NQYLATIPPREYSSEKPTIAVAIAEGKILPGLQPAGVIGSESL 345


>gi|332535711|ref|ZP_08411463.1| protease IV [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034886|gb|EGI71415.1| protease IV [Pseudoalteromonas haloplanktis ANT/505]
          Length = 588

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 70/277 (25%), Positives = 137/277 (49%), Gaps = 15/277 (5%)

Query: 18  VTLTVVYFSWSSHVEDNSP---HVARIAIRGQIEDSQ---------ELIERIERISRDDS 65
           V+           +E ++P    VA +  +G I D +              + +   DD 
Sbjct: 269 VSFREYLSLIKPPIEIDNPITEKVAVVVAKGTIVDGERKAGEIGGDSTAALLRKARLDDK 328

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAA 124
             A+++ + S GGS +A E I   +  +K   KPVI  +  +AAS GY I+ A+N I AA
Sbjct: 329 VKAVVLRIDSGGGSMFASEVIRAEVLALKAAGKPVIASMSSVAASGGYWIASAANEIWAA 388

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
            +++ GSIGV   +   +  L K+GV    V ++ M    S    +N K  Q++Q  V+ 
Sbjct: 389 PSTITGSIGVFGTFMTFEKTLSKIGVYSDGVATTEMAG-FSITRPLNEKMGQVIQMNVEE 447

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           +Y  F+ +V+++RN+  ++   ++ GR+W  ++A ++GL+D +G +++  ++  AL    
Sbjct: 448 AYGRFLNVVADARNMTPEQVDKIAQGRVWIASQALELGLVDKLGDKQDAIEAAAALAKL- 506

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
           +  ++K      +     ++N+  ++ ++  + L  Q
Sbjct: 507 NHYEVKTIKQDLSSQEKMIQNIFGNASIKSMLGLQTQ 543



 Score = 78.5 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 95/295 (32%), Gaps = 37/295 (12%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQIEDS--------------------------QELIE 55
           +   S    +   +  V R+ + G I +                            +++E
Sbjct: 1   MSLSSDDDQIIVENGSVLRLNLNGPIVEEKTYIDPVEAAISDATSGSEAPSEILLDDIVE 60

Query: 56  RIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114
            I   ++DD  T +++ L   P       + I +AI   K     +         A Y I
Sbjct: 61  VINEATKDDRITVILLDLQEMPKAHLNKLKQITKAIDAFKQAGKKVIASGYYYTQAQYYI 120

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172
           +  ++ I       VG  G      Y K  L+KL V+    +    K+   PF  ++++ 
Sbjct: 121 ASHADEIAMHPYGSVGIEGYGMYPLYFKDALEKLEVTQHIFRVGTFKSAVEPFIRNDMSD 180

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLI 224
            A +  +  + + +  + + V+  R                 +       G  A     +
Sbjct: 181 AAKEANRVWLGALWSEYKQDVAAVRPFDESNFDETMDVYLEKMKAADGDAGKYALDHQWV 240

Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
           D +   ++V + L  L   +   K       + Y       + I + + + + ++
Sbjct: 241 DSLKTNQQVRKQLIDLVGTREDGKTFKQVSFREYLSLIKPPIEIDNPITEKVAVV 295


>gi|304382981|ref|ZP_07365462.1| signal peptide peptidase SppA [Prevotella marshii DSM 16973]
 gi|304335900|gb|EFM02149.1| signal peptide peptidase SppA [Prevotella marshii DSM 16973]
          Length = 591

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 128/285 (44%), Gaps = 18/285 (6%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIED--------------SQELIERIERISRDDS 65
           L++   +           +A     G I                +Q++ + ++ +  DD 
Sbjct: 285 LSIADMANVKEGSSEGEQIAVYYAEGGIVQTSLSGTFSGGQEIVAQDVCKDLKELMEDDD 344

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
             A+++ ++S GGS+YA E ++  I ++K +KPV+  +   AAS GY +SC ++ IVA  
Sbjct: 345 VKAVVIRVNSHGGSSYASEQLWHQITELKKKKPVVVSMGGYAASGGYYMSCGADWIVAQP 404

Query: 126 TSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPM--KAEPSPFSEVNPKAVQMMQDVV 182
           T+L GSIG+   +P +   L +KLGV    VK++     +        N +   ++Q  V
Sbjct: 405 TTLTGSIGIFGAFPDMSGLLTEKLGVRFDEVKTNRNSAFSFIRTAHPFNAEETALLQAYV 464

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           +  Y  F + V++ R    +    ++ G +WTG +A ++GL+D +GG +E      A   
Sbjct: 465 NRGYTLFRKRVADGRKRSVEAIENMAQGHVWTGRDALRIGLVDQLGGLDEAIAK-AAKLA 523

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
                  +++    ++      ++   S L+D +        Q  
Sbjct: 524 KLDEYYTENYPEEADFIDQLFASVGRRSYLDDQLRAALGEYYQPF 568



 Score = 94.3 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 87/260 (33%), Gaps = 23/260 (8%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-------------------SQEL 53
           + + L+++  +  S S     +   V  + + G I+D                     ++
Sbjct: 23  IFIGLMSIVGMLASESQTKNVSENSVLVMNMAGVIQDKTQPNILGKLTGENIAQLGLSDI 82

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
           +  +++   +D    + +            + I  A    K     +    +  +   Y 
Sbjct: 83  LSAVKKAKNNDDIKGIYIEAGLLQADYATLQEIRNAFLDFKKSGKWVIAYADDYSQGAYY 142

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE--PSPFSEVN 171
           ++  ++ I       +   G+  +  + K    K GV  + VK    K+        +++
Sbjct: 143 LASVADKIYINPQGTLDWHGLAARPVFYKDLYAKFGVKYQVVKVGRYKSFTEQYTEEKMS 202

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--GAEAKKVGLIDVVGG 229
               + +   ++ ++    + VSESR I  D     +D  +      E  K  +ID +  
Sbjct: 203 DANREQVSAFLNGTWKDICQAVSESRKISVDSLNAYADRFMLLTDAKELLKYRMIDGLLY 262

Query: 230 QEEVWQSLYALGVDQSIRKI 249
            +++   +      +  + I
Sbjct: 263 ADQIKPEVCKRLGIEPDKDI 282


>gi|296109597|ref|YP_003616546.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus
           infernus ME]
 gi|295434411|gb|ADG13582.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus
           infernus ME]
          Length = 300

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/215 (28%), Positives = 127/215 (59%), Gaps = 1/215 (0%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
           D+   I  ++++ +D S   +++ ++SPGG   A E + + +++V  +KPV+  +  + A
Sbjct: 57  DANYYINLLDKLEKDKSVKGVLLIINSPGGEVVASEELAKKVKEVSEKKPVVAYIQTIGA 116

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
           S  Y+++ +SN IVA   S+VGSIGV     +    + KLG+++ ++K+   K   SP+ 
Sbjct: 117 SGAYMVASSSNYIVAQRHSVVGSIGVRMDIIHFYGLMKKLGINVTTIKAGKYKDIGSPYR 176

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
            + P+  ++++ +++ +Y++F+  V+++RN+  + T  +++G+I+ G +AKKVGL+D VG
Sbjct: 177 PMTPEEKKILEKMINETYNYFIMWVAKNRNLSINYTKKIAEGKIYLGEDAKKVGLVDEVG 236

Query: 229 GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
            +E   + L  L    +   I+++   +   F  L
Sbjct: 237 DEEVALKKLEELANVTN-PTIEEYGLSETSGFFGL 270


>gi|169829578|ref|YP_001699736.1| putative signal peptide peptidase sppA [Lysinibacillus sphaericus
           C3-41]
 gi|168994066|gb|ACA41606.1| Putative signal peptide peptidase sppA [Lysinibacillus sphaericus
           C3-41]
          Length = 337

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/261 (26%), Positives = 123/261 (47%), Gaps = 16/261 (6%)

Query: 30  HVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSLSSP 76
             ++    +A + + G I+D              Q  +E+++ I  DD+   +++S++SP
Sbjct: 54  EGDNFDKRIAYLKVDGTIQDIGSSSLWQPVAYDHQFFLEQLDSILYDDTIEGIVLSVNSP 113

Query: 77  GGSAYAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG       I++ + K+K  + +     +  MAAS GY IS  ++ I A   ++ GSIGV
Sbjct: 114 GGGVKESAEIYKKLLKIKEERQIPIYVSMDSMAASGGYYISAPADKIFAHRDTITGSIGV 173

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           + Q    +   +K+GV  ++ KS   K   SP  +V P+   MMQD+++ +Y  FV +V 
Sbjct: 174 IMQSINYQALAEKVGVKFETFKSGEHKDMLSPMRDVTPEERAMMQDMINETYEEFVDIVE 233

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           + RN+       ++DGRI  G +A + GL+D +G +E    +L A    +    + ++  
Sbjct: 234 QGRNMSEADVKKVADGRILGGTKALEAGLVDEIGDEEAAIAALRADFGLEDAV-LFEYAY 292

Query: 255 PKNYWFCDLKNLSISSLLEDT 275
               W   +     S      
Sbjct: 293 DMGGWQSYVGMKIGSMFGPSA 313


>gi|319899201|ref|YP_004159294.1| protease [Bartonella clarridgeiae 73]
 gi|319403165|emb|CBI76724.1| protease [Bartonella clarridgeiae 73]
          Length = 282

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 19/268 (7%)

Query: 37  HVARIAIRGQIEDSQELIER----------IERISRDDSATALIVSLSSPGGSAYAGEAI 86
            +  + ++G I  S  L+ R          +++      A  + + ++SPGGS      I
Sbjct: 18  QIPVVRLQGAIISSNSLMSRTLSLARCASLLDKAFSYKKAPVVALIINSPGGSPVQSHLI 77

Query: 87  FRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           F+ I+ + N K     T V ++AAS GY+I+CA + I A  +S+VGSIGV+         
Sbjct: 78  FQRIRDLANEKNKQVFTFVEDVAASGGYMIACAGDEIFADPSSIVGSIGVVSASFGFPEL 137

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K+GV  +   +   K    PF       V  ++ +    +  F+ LV E R       
Sbjct: 138 LKKIGVERRVYTAGKNKVTLDPFQPEKKTDVDHLKSLQLEVHQTFIDLVKERRTSKLSDD 197

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             +  G  W+G +  ++GLID +G    V +  +      +  K++  +PPK+     + 
Sbjct: 198 SNIFTGMFWSGQKGVELGLIDELGDVRSVIKKRFG-----NNAKLRLISPPKSLLSSKVP 252

Query: 265 NLSISSLLEDTIPLMKQTKVQGLWAVWN 292
               + +    +  +     +   A+W 
Sbjct: 253 LGISADIAYTAVDGVMMAAEEQ--ALWQ 278


>gi|262277441|ref|ZP_06055234.1| peptidase family S49 [alpha proteobacterium HIMB114]
 gi|262224544|gb|EEY75003.1| peptidase family S49 [alpha proteobacterium HIMB114]
          Length = 268

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 70/269 (26%), Positives = 129/269 (47%), Gaps = 22/269 (8%)

Query: 33  DNSPHVARIAIRGQIEDSQELI---------ERIERISRDDSATALIVSLSSPGGSAYAG 83
              P VA I + G I +              + I++       +A+ +S++SPGGS    
Sbjct: 4   SKKPQVAHIRLSGVIGNVGRFQQGMSLSSHEKIIKKAFNQKKLSAVAISINSPGGSPVQS 63

Query: 84  EAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
             I+  I+++   K V  IT   ++AAS GY+++CA + I A  +S+VGSIGV++    +
Sbjct: 64  HLIYSLIRRLAEEKKVKVITFAEDVAASGGYMLACAGDEIYANPSSIVGSIGVIYSSFGL 123

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
           K  + K+G+  +   +   K+   PF +  P+ ++ ++ +    +  F+ LV  SR    
Sbjct: 124 KELIKKIGIERRVHTAGKNKSTLDPFMDEKPEDIERLKKIQLDLHDQFISLVKNSRKDKI 183

Query: 202 --DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
             DK   L  G  W+G ++K++GL+D +G  E+V Q  +   V      IK ++ P+++ 
Sbjct: 184 SSDKDDQLFTGEFWSGIQSKELGLVDGLGNMEDVIQEKFGKKVV-----IKKFDKPESWL 238

Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
              L     S +      +  + + + LW
Sbjct: 239 KRKL----SSQISNQFSNVADEIETRSLW 263


>gi|225455748|ref|XP_002268894.1| PREDICTED: similar to SPPA (signal peptide peptidase); protease IV/
           serine-type endopeptidase [Vitis vinifera]
          Length = 686

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/272 (23%), Positives = 113/272 (41%), Gaps = 17/272 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSL 73
           W+  +      +A I   G I               S++ IE+I  +       A+I+ +
Sbjct: 375 WTLGLSGGKDQIAVIRASGSISRVRSPFSIPGSGITSEQFIEKIRSVRDSKRYKAVIIRI 434

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
            SPGG A A + ++R I+ +   KPVI  + ++AAS GY ++  +  IVA   +L GSIG
Sbjct: 435 DSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGTIVAENLTLTGSIG 494

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP-FSEVNPKAVQMMQDVVDSSYHWFVRL 192
           V+     +    +K+G + + +         +       P   ++      ++Y  F   
Sbjct: 495 VVTGKFNLGTLYEKIGFNKEIISRGRFAELTAAEQRPFRPDEAELFAKSAQNAYKQFRDK 554

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--K 250
            + SR++  DK    + GR+WTG +A   GL+D +GG                 R +   
Sbjct: 555 AAFSRSMAVDKMEENAQGRVWTGKDAASRGLVDAIGGLSRAVAIAKQKADIPQDRPVTLV 614

Query: 251 DWNPPKNYWFCDLKNLSISS-LLEDTIPLMKQ 281
           + + P       L  +  S   +E T+  + Q
Sbjct: 615 ELSRPSPTVSEILTGIGSSIVGVERTLKELLQ 646



 Score = 83.9 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 102/301 (33%), Gaps = 21/301 (6%)

Query: 2   EFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS----------- 50
           +F  K++ + ++   +    ++ F W          V  + +RGQI D            
Sbjct: 105 DFEFKEM-SGWMSFVVKLRMLIAFPWE---RVRKGSVFTMKLRGQISDQLKSRFSSGLSL 160

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
            ++ E   + + D   + + + +          E I R I   K     I          
Sbjct: 161 PQICENFIKAAYDPRISGIYLHIEPLSCGWGKVEEIRRHILDFKKSGKFIVAYAPACGEK 220

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFS 168
            Y +  A + + A  ++     G+  Q  ++    +K+G+  +  +    K+  +     
Sbjct: 221 EYYLGSACDELYAPPSAYFSLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLTRK 280

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
            ++ +  +M+  ++D+ Y  ++  +S ++    + T    +  ++   + K+ G I  + 
Sbjct: 281 TMSEENCEMLTALLDNIYGNWLDKISSAKGKKREDTENFINEGVYQVEKLKEEGWITNIN 340

Query: 229 GQEEVWQSLYALGVDQSIRKI--KDWNP--PKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
             +EV   L         + +   D+        W   L        +      + + + 
Sbjct: 341 YDDEVISILKERLGQPKDKNLPMVDYRKYSKVRKWTLGLSGGKDQIAVIRASGSISRVRS 400

Query: 285 Q 285
            
Sbjct: 401 P 401


>gi|170740974|ref|YP_001769629.1| peptidase S49 [Methylobacterium sp. 4-46]
 gi|168195248|gb|ACA17195.1| peptidase S49 [Methylobacterium sp. 4-46]
          Length = 287

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 115/259 (44%), Gaps = 11/259 (4%)

Query: 36  PHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
           P VA + + G I     L            +ER        A+ + ++SPGGSA     I
Sbjct: 22  PLVAVVRLSGPIGAVSPLRQGLSLGTCAPALERAFGLPGLKAVALVINSPGGSAAQSHLI 81

Query: 87  FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
              I+ +   K  PV+  V ++AAS GY+I+CA++ IVA  +SLVGSIGV+      +  
Sbjct: 82  HHRIRALAEEKKLPVLAFVEDVAASGGYMIACAADEIVADPSSLVGSIGVVSAGFGFQGL 141

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L++LGV  +   + P KA   PF   +P  V  ++ +       F  LV   R     + 
Sbjct: 142 LERLGVERRVHTTGPSKAMLDPFRPEDPADVARLKGIQADIQALFTDLVRARRPSLSGEP 201

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             L  G +W+G +A  +GL+D +G    V ++ Y   V+  + +                
Sbjct: 202 ADLFSGAVWSGRQALALGLVDALGDLRGVLRARYGDKVEIRVVEQVRGGLLARLLRRREP 261

Query: 265 NLSISSLLEDTIPLMKQTK 283
                +L+E  + ++++  
Sbjct: 262 GAEGLALVEGALAVLEERA 280


>gi|85707607|ref|ZP_01038673.1| periplasmic serine protease [Erythrobacter sp. NAP1]
 gi|85689141|gb|EAQ29144.1| periplasmic serine protease [Erythrobacter sp. NAP1]
          Length = 629

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 112/231 (48%), Gaps = 10/231 (4%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIEDSQELIE---------RIERISRDDSATALIVSLSS 75
           F       D+S  +A + + G I D                +      D    L+V ++S
Sbjct: 301 FLADIGNGDSSGEIAVVTVAGTIVDGDAGPGAAGGARIAGLLNDALATDDIKGLVVRVNS 360

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVI-TEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           PGGS  A E I RA+Q+ +++   +      +AAS GY ++ +S+ I A   ++ GSIGV
Sbjct: 361 PGGSVLASEEIRRAVQRFRDKDIPVAVSFANVAASGGYWVATSSDRIFAQPETITGSIGV 420

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
               P  +    ++GV+ +  +++P+  +P   + ++P+   ++Q  V  +Y  F+  V+
Sbjct: 421 FAVIPTFEDAAAEIGVNAEGFRTTPLSGQPDLIAGLSPEVDAILQAGVSDTYSDFLTRVA 480

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           E+R +  ++   ++ GR+W G  A+++GL+D  GG ++    +      + 
Sbjct: 481 EARGLTVEQVDTMAQGRVWDGGTARQLGLVDQFGGLQDAINWVAEKAELEE 531



 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 85/236 (36%), Gaps = 13/236 (5%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
           +++L+  ++  + DD   A+++ +S+   G     +AI  A+ +V+     +        
Sbjct: 81  ARDLVRALDAAAGDDRIKAVVMDMSAFVGGGQVHMQAIGEAMDRVRKADKPVLTYAVAYG 140

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167
                ++  ++ + A         G      Y    LDKL ++ +  +    K+   P+ 
Sbjct: 141 DDHMHLAAHASEVWADPLGGAIIAGPGGANLYYAELLDKLNINTRVYRVGEFKSAVEPYI 200

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-------TGAEAK 219
            +  +  A +  + +  + +  +   V ++R    D   V+ D   W           A 
Sbjct: 201 LNGPSDAARENREALYGALWEEWQANVKKAR-PSLDLDRVIGDPVAWVEASSGDLAEAAL 259

Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRKI--KDWNPPKNYWFCDLKNLSISSLLE 273
           + GL+D +G   E    +  +  + +  K            +  D+ N   S  + 
Sbjct: 260 EAGLVDNLGDSVEFGTRVAEIVGEDTSTKKPGTYAKSDLRPFLADIGNGDSSGEIA 315


>gi|258652617|ref|YP_003201773.1| signal peptide peptidase SppA, 36K type [Nakamurella multipartita
           DSM 44233]
 gi|258555842|gb|ACV78784.1| signal peptide peptidase SppA, 36K type [Nakamurella multipartita
           DSM 44233]
          Length = 561

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 13/227 (5%)

Query: 37  HVARIAIRGQIEDSQELIERIERISRDDSA-------------TALIVSLSSPGGSAYAG 83
           HVA + I+G I+  +     + R +  D+               A+++ + SPGGSA A 
Sbjct: 273 HVALVTIQGTIDSGRSRRGLMGRTAGSDTVGAALRAAAADERARAVVLRVDSPGGSAVAS 332

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           E I+R +  ++  KPVI  +  +AAS GY ++C ++ IVA   +L GSIGV      V+ 
Sbjct: 333 ETIWREVCLLQRAKPVIVAMGAVAASGGYYVACPADRIVALPATLTGSIGVFGGKVVVQE 392

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            + +LG+S  SV+        S     +      +   +D+ Y  FV  V++ R     +
Sbjct: 393 LMTRLGLSAGSVQRGAHARMFSSRRPFDEDEKTNLAAGLDAIYDDFVGKVAQGRGRSTGQ 452

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
              ++ GR+WTG +A   GL+D +GG  +  +   A G       ++
Sbjct: 453 IEAVARGRVWTGRDAVAAGLVDELGGLRDAVRLARARGGLAPDAPVR 499



 Score = 78.9 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 88/235 (37%), Gaps = 9/235 (3%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGG 78
            L  +  S +    D +  +AR+  RG+  D +  +  +   + D     L+  +  P  
Sbjct: 12  ILLELDLSTAPVELDPAEPLARLRQRGR-RDLRATLRALHEAADDPRVVGLVARVGGPL- 69

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG-----YLISCASNIIVAAETSLVGSIG 133
                + +   ++             +  A        Y+++ A + +       VG +G
Sbjct: 70  PWSVMQELRAGVRAFAAGGKPTLAWAQTFAEQPGAMAGYVLATAFDELWLQPGGEVGLLG 129

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           V  +  +++  LDKLG+  +  +    K   +    +E      + +  VV S +   V 
Sbjct: 130 VALETTFLRGSLDKLGLQPQLDQRHEYKNAADTIMRTEYTRAHREALDRVVGSVFDDAVE 189

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
            +++ R +   +   L DG       A+  GL+D +G ++E   ++     D+  
Sbjct: 190 AIAQGRRLDPAQVRTLVDGGPTLAPAARDAGLVDRLGYRDEALAAMRVRVGDEPE 244


>gi|254480343|ref|ZP_05093591.1| signal peptide peptidase SppA, 67K type [marine gamma
           proteobacterium HTCC2148]
 gi|214039905|gb|EEB80564.1| signal peptide peptidase SppA, 67K type [marine gamma
           proteobacterium HTCC2148]
          Length = 615

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 70/279 (25%), Positives = 138/279 (49%), Gaps = 23/279 (8%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
              P VA I  +G +           +  L   I + + D+S  A+++ +++PGGS +A 
Sbjct: 320 TGEPKVAVIVAQGNMLPGDQSPGTIGADSLATMISKTAADESVKAIVLRVTTPGGSMFAS 379

Query: 84  EAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + I +V+     +   +  +AAS GY I+ A++ I A +T++ GSIGV+  +P  +
Sbjct: 380 EIIRQQILEVRANGTPVVVSMGSIAASGGYYIAAAADEIFATKTTITGSIGVIAVFPTFE 439

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + G+    V ++ +         +NP+  + +Q  V +SY  F+++V++ R++  D
Sbjct: 440 NLLQRGGIYTDGVGTTSLAGSLRLDRPLNPELTKALQAGVANSYQLFLQVVADGRSMELD 499

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPKNYWF 260
           +   +++GR+W+ ++A  +GL+D +G  ++   +   L       I  ++    P   +F
Sbjct: 500 EVAAVAEGRVWSASDALSLGLVDQLGDLDDAINAAAGLADLDAFQIDYVEQPLSPSELFF 559

Query: 261 CDL-----------KNLSISSLLEDTIPLMKQTKVQGLW 288
             L           ++ S+SSLL  + P ++ T V G  
Sbjct: 560 QQLAERMGSVGLLPRSHSVSSLLNLSKPYLEATGVLGSL 598



 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 92/272 (33%), Gaps = 34/272 (12%)

Query: 10  TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS------------------- 50
              V L ++ +    +   S           I   G I D                    
Sbjct: 26  ANLVFLLMLGVIYFVYFAGSTEPLPEQAALLINPMGTIVDQKSPVDPLQTLVAAPSPADH 85

Query: 51  ----QELIERIERISRDDSATALIVSLSS-PGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
               +++IE I     DD   +L++ L S         + I  A+++ K     +  V +
Sbjct: 86  EVLVRDVIEAIRLAKDDDRINSLVMELGSLMYVGISRTQEIVVALEEFKTSGKPVVAVGD 145

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
             +   YL++  ++ ++A         G    + +    LDKL VS+   ++   K+   
Sbjct: 146 YFSQDQYLLASYADELIAHPIGGAALEGFSMYHNFYAEALDKLSVSMHVFRAGEYKSAAE 205

Query: 166 PF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV--------LSDGRIWTG 215
           P+  S+++        + ++  +  +   V  +R +P              L  G   + 
Sbjct: 206 PYLRSDMSTAQKSNALEWLEDLWASYTSTVEANRELPSGAVDAYVNGYASRLVAGDGDSA 265

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            +A   GLID +  + +  + L  +   ++  
Sbjct: 266 KDALDAGLIDQLLTRSQANEYLSDMVGARNED 297


>gi|99082363|ref|YP_614517.1| peptidase S49 [Ruegeria sp. TM1040]
 gi|99038643|gb|ABF65255.1| peptidase S49 [Ruegeria sp. TM1040]
          Length = 265

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 114/259 (44%), Gaps = 11/259 (4%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGG 78
           S+        P VA + + G I        +   L   +ER        A+ + ++SPGG
Sbjct: 2   SFRLPFTKRPPQVAVVRLSGAIGMAGRGSLNDSTLAPVLERAFTKGKPKAVALEINSPGG 61

Query: 79  SAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           S      I   I+++   +  PVI  V ++AAS GY ++ A++ I A  +S+VGSIGV+ 
Sbjct: 62  SPVQSALIGARIRRLAEERDVPVIAFVEDVAASGGYWLAAAADEIYADASSVVGSIGVIS 121

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                  FL + G+  +   +   K+   PF   N + V  ++ +++  +  F+  V++ 
Sbjct: 122 AGFGAHVFLARQGLERRVHTAGESKSMLDPFRPENEEDVARLKGLLNDIHANFIDHVTDR 181

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R         L  G IW    AK++GLID +G    V Q  +   V      IK   P  
Sbjct: 182 RGEKLSTEEKLFTGEIWLARRAKELGLIDGIGHLRPVLQERFGDKVRLRRHGIK--KPFL 239

Query: 257 NYWFCDLKNLSISSLLEDT 275
           + +   +   +++++ E  
Sbjct: 240 SRFGLSMAEDALAAVEERA 258


>gi|257463195|ref|ZP_05627594.1| protease IV [Fusobacterium sp. D12]
 gi|317060783|ref|ZP_07925268.1| protease IV [Fusobacterium sp. D12]
 gi|313686459|gb|EFS23294.1| protease IV [Fusobacterium sp. D12]
          Length = 564

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/233 (27%), Positives = 114/233 (48%), Gaps = 1/233 (0%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPG 77
           +     YFS          ++A + + G IED    ++ +E I RD++   +I+ ++SPG
Sbjct: 284 IISIQEYFSLVKIKNRPKQYLALLTLEGTIEDETLFLDEVEAIQRDNNVKGVILRINSPG 343

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           GSA   + ++ A++K++ + PV   +   AAS GY ++ A   I A+  S+ GSIGV+  
Sbjct: 344 GSALVADMMYHAVKKLREKVPVYVSISGTAASGGYYVAVAGEKIFASPLSITGSIGVVSM 403

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
            P      +K  VS++S+         S    ++ +    ++      Y  F+ +VS +R
Sbjct: 404 IPNFSHLREKAEVSVESISKGKYADLYSYLKPLSEENYNRIRQGNLGVYKDFLEVVSSNR 463

Query: 198 NIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
            I  +     L+ GR+W GAEAK+  LID +GG E    +L       ++  +
Sbjct: 464 KIETNFLDQHLAQGRVWLGAEAKEHKLIDELGGLEATIYALEQDKNLGALPIL 516



 Score = 66.6 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 99/242 (40%), Gaps = 14/242 (5%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
           E++  ++ I +D     ++++      +    E I   +QK++     +    + A  A 
Sbjct: 87  EVLYALDSIRQDPRIKGVLLNADFLSWNKAQVEEIGTKLQKLQEEGKDLIVTLQEANRAN 146

Query: 112 YLISCASNIIVAA--ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP--SPF 167
           Y ++  +  IV      +        ++  Y K  LD+ G+++  +     K+       
Sbjct: 147 YFLASYAQKIVMPPIHAASSNISPYHYEELYWKSLLDRFGITMNVIPIGDYKSYMENYSH 206

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV---GLI 224
           S ++P+  + M+ +++ +Y + + L++E+R I  +      +     G+    +   GL+
Sbjct: 207 SHMSPEFRENMKRLLEHTYQYSLHLMAENRKINKNDLESWIENGELMGSSFHTLFEKGLV 266

Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDW---NPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
                + E  Q +     +++I  I+++      KN     L  L++   +ED    + +
Sbjct: 267 ----SKGEYPQRILEKIGEENIISIQEYFSLVKIKNRPKQYLALLTLEGTIEDETLFLDE 322

Query: 282 TK 283
            +
Sbjct: 323 VE 324


>gi|239831270|ref|ZP_04679599.1| Na(+)/H(+) antiporter nhaA [Ochrobactrum intermedium LMG 3301]
 gi|239823537|gb|EEQ95105.1| Na(+)/H(+) antiporter nhaA [Ochrobactrum intermedium LMG 3301]
          Length = 290

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/265 (24%), Positives = 114/265 (43%), Gaps = 18/265 (6%)

Query: 38  VARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           +  + + G I                   +E+   D  A A+ +SL+SPGGS      I+
Sbjct: 20  IPVVRLHGAIMSGGSAFRPSLSIASTAAILEKAFTDKEAPAVAISLNSPGGSPVQSRLIY 79

Query: 88  RAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           R I+ +  +++K V   V ++AAS GY+I+ A + I+A  +S+VGSIGV+         L
Sbjct: 80  RRIRDLAAEHQKKVFIFVEDVAASGGYMIALAGDEIIADPSSIVGSIGVVSASFGFPELL 139

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV  +   +   K    PF       ++ ++ +    +  F+ +V E R     +  
Sbjct: 140 KKIGVERRVYTAGSNKVTLDPFQPEKKADIERLKSLQLEIHETFIDMVKERRGAKLAEDQ 199

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L  G  WTG +A+++GLID +G      +  Y         K+K     ++     +  
Sbjct: 200 DLFTGLFWTGIKAQQLGLIDGLGDMRSFLRKTYG-----DKVKLKLVEQKRSLLGRKVPG 254

Query: 266 LSISSLLEDTIPLMKQTKVQGLWAV 290
           + ++ L       +      GL +V
Sbjct: 255 VDMA-LANLEPASIAAHLGDGLLSV 278


>gi|315498282|ref|YP_004087086.1| signal peptide peptidase sppa, 67k type [Asticcacaulis excentricus
           CB 48]
 gi|315416294|gb|ADU12935.1| signal peptide peptidase SppA, 67K type [Asticcacaulis excentricus
           CB 48]
          Length = 592

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 119/283 (42%), Gaps = 19/283 (6%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIED---------------SQELIERIERISRDDSAT 67
           +    ++ V   S  +A I   G I                 S ++ +       +D   
Sbjct: 281 IQSYAATTVSTGSQTIAVINGEGPIMTGKGSGGGFGSEAQMLSDDVAQAFYDAVENDKVK 340

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAET 126
           A++  +SSPGGS  A E I RA+   K   KPV+  + + AAS GY +S  ++ IVA  T
Sbjct: 341 AIVFRVSSPGGSDTASEQISRALAYAKKSGKPVVVSMGDYAASGGYWVSAGASAIVANPT 400

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-PMKAEPSPFSEVNPKAVQMMQDVVDSS 185
           +L GSIGV      +     + GV  + +          S       K  Q + + +D+ 
Sbjct: 401 TLTGSIGVYGGKMAIGEAASRFGVDFRQIGVGSEYAGAYSAGKPFTDKQTQAISNWMDTI 460

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y+ F+  V+E R +  ++   ++ GR+WTGA+AK++GL+D  GG          L     
Sbjct: 461 YNAFIGHVAEGRKLAPERVREIAKGRVWTGAQAKQLGLVDETGGFYAAVAKAKKLAKIGD 520

Query: 246 IRKI--KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
             K+   ++   K+ +    K +  S+   + +  +       
Sbjct: 521 DVKVKLVNYPNNKSPFAMFGKGVEASAKGFEALSFLGWAAGDP 563



 Score = 78.9 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 94/265 (35%), Gaps = 28/265 (10%)

Query: 8   IKTRYVMLSLV--TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51
           +   +V+  +    L +   + +S     S     + +R  + D                
Sbjct: 11  VFAAFVLFFVGVPFLLITMVAAASKPTTPSAITLVVDLREGLTDQTRSDPFAFITGRPLS 70

Query: 52  --ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
             +++  +   + D    ++++ L   G    A + I  A++ V+++   +    +    
Sbjct: 71  TMDIVTSLYHAADDSKVKSVLIRLPEGGLMPAAAQEIRTAVRYVRSKNKPVYAHSQGLYP 130

Query: 110 AG-----YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164
           +      Y +  A+        S     G+  +  ++K   DK G++ +  +    K   
Sbjct: 131 STMVLASYTVGTAATEFWMQPRSSFQVTGIATEEMFLKRAFDKYGITPQFQQRYEYKNAV 190

Query: 165 SPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK---TLVLSDGRIWTGAEAK 219
           +P+  S+  P   +     + S Y   +   +  R            + +   ++  +AK
Sbjct: 191 NPYLQSDFTPAHREATLSWMGSVYDSLINDAAIDRKDAKLDAGKLKSILEAGPYSAEQAK 250

Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQ 244
           ++GLI  +G  +E+ ++  A G   
Sbjct: 251 ELGLITNLGQVQEIEEAAKAKGGAD 275


>gi|255067016|ref|ZP_05318871.1| signal peptide peptidase SppA, 36K type [Neisseria sicca ATCC
           29256]
 gi|255048841|gb|EET44305.1| signal peptide peptidase SppA, 36K type [Neisseria sicca ATCC
           29256]
          Length = 329

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/279 (22%), Positives = 125/279 (44%), Gaps = 20/279 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV----EDNSPHVARIAIRGQIEDS-QELIERIE-- 58
           +  +  + ++ ++   +   S         + +  H A I ++G+I +   + +E +   
Sbjct: 45  RIWRNIWRVIGVILFLMFIASLFGDDTDAVQSSGEHTAVIDLKGEIGNELDDQVEMLRTG 104

Query: 59  --RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYL 113
              +  + +A A+I+  +SPGGS       F  I+++       PV     +M AS  Y 
Sbjct: 105 MEAVYNNPNAKAIIIRANSPGGSPVVSNIAFNEIRRMKSEHKDIPVYVVAEDMCASGCYY 164

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           I+ A++ I A  +S+VGSIGV+         +DK+G+  +   +   K    PFS   P 
Sbjct: 165 IAAAADKIYADPSSVVGSIGVIGGGFDATGLMDKIGIKRRLKIAGSNKGMGDPFSPETPA 224

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQE 231
             Q+ + ++   +  F++ V   R           +  GRI+TG+EAK+VGLID  G   
Sbjct: 225 QTQIWEKMLTDIHKEFIKSVKLGRGKRLKDQQYSDVFSGRIYTGSEAKEVGLIDDFGSVY 284

Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270
            V + +        + ++ ++ P +++     ++LS   
Sbjct: 285 SVARDVVK------VPELVNYTPEEDFGKILGRHLSAEM 317


>gi|325003037|ref|ZP_08124149.1| serine protease [Pseudonocardia sp. P1]
          Length = 298

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 115/272 (42%), Gaps = 13/272 (4%)

Query: 31  VEDNSPHVARIAIRGQIE-----------DSQELIERIERISRDDSATALIVSLSSPGGS 79
               +P V+ + + G I            ++  + + +ER    D   A+ + ++SPGGS
Sbjct: 23  GAAGAPVVSVVRLHGVISAQAAPVPRQVLNAASVEKVLERAFAPDRLAAVALVINSPGGS 82

Query: 80  AYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
               + I   I+ +  +   PV+    ++AAS GY ++CA++ I A  TS+VGSIGV+  
Sbjct: 83  PTQSQLIGDRIRSLAAEAEVPVLAFCEDVAASGGYWLACAADEIYACSTSIVGSIGVVSA 142

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
              +   +DK GVS +   +   K+   PF     + V  +  + +  +  F   V E R
Sbjct: 143 GFGLDGLIDKWGVSRRLHTAGGSKSRLDPFLPEKAEDVAWLTGLQEQLHERFTGWVRERR 202

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
                    L DG +W G  ++++GL+D +G   +V    +     + + + +       
Sbjct: 203 GDRLAGDTELFDGEVWLGERSRELGLVDGIGTVHDVLDERFPDAEQRPVEQRRPLLARLG 262

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                 +  S     +    L+   + +  WA
Sbjct: 263 AGGGAARAHSFGDPADVAFELLSAVETKATWA 294


>gi|134045563|ref|YP_001097049.1| signal peptide peptidase SppA, 36K type [Methanococcus maripaludis
           C5]
 gi|132663188|gb|ABO34834.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Methanococcus maripaludis C5]
          Length = 307

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 72/254 (28%), Positives = 134/254 (52%), Gaps = 15/254 (5%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--------------QELIERIE 58
           V L ++   V +         +S ++A I + G I                  + IE I+
Sbjct: 11  VFLIIILFLVGFILLIPVDGISSKNMAMINLDGTISSQTSESGFFSEFEPSVDDYIEWID 70

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118
              +D +  A+I+ ++SPGG   A E + R I++    K VI  +  M  SA Y  + ++
Sbjct: 71  DAEKDSNIKAIIIKINSPGGEVIASEKLSRKIKEASEEKVVIAYIETMGTSAAYQAASST 130

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + IVA   +LVG+IGV  +  +    ++KLGV+  ++KS   K   SP   +  +  +M+
Sbjct: 131 DYIVAERQALVGNIGVRMEIIHYYGLMEKLGVNATTIKSGIYKDIGSPTRPMTEEEQRML 190

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           + +VD SY+ FV  V+E+RN+  ++TL ++DG+I++G +AK+VGL+D+ G +E+  +   
Sbjct: 191 ESIVDESYYEFVSWVAENRNMTINETLRVADGKIYSGVQAKRVGLVDMTGTEEDAIEVAA 250

Query: 239 ALGVDQSIRKIKDW 252
            +    +  ++ ++
Sbjct: 251 KMANLSN-PEVYEY 263


>gi|320538294|ref|ZP_08038179.1| signal peptide peptidase SppA [Treponema phagedenis F0421]
 gi|320144870|gb|EFW36601.1| signal peptide peptidase SppA [Treponema phagedenis F0421]
          Length = 603

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/280 (22%), Positives = 123/280 (43%), Gaps = 18/280 (6%)

Query: 10  TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED----------SQELIERIER 59
           T +   + ++L    F +S    +++  +  I ++G I            S  +++  + 
Sbjct: 293 TFFENKNFISLDDYNFYYSHS--ESTNKIGIIYLKGAISSYGTRQNDAVTSGYMLDLFDL 350

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK--VKNRKPVITEVHEMAASAGYLISCA 117
              D    A+++ + S GG  +A E I RA+++  V+ +KPV+  +  +AAS  Y I+ +
Sbjct: 351 AVNDPDVKAIVLRIDSGGGEVFASEEIRRAVERCIVRAKKPVVVSMGAVAASGAYWIASS 410

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
           ++ I A+  ++ GSIGVL   P  +  L   LG+++  V     +        ++     
Sbjct: 411 ADYIFASPYTITGSIGVLAVMPTFEAALQKYLGITVDGVYLHKFRPYTG-VKNMSETDKS 469

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           ++Q  + S Y  F+  VS  R + +DK   ++ G++++GA AK +GL+D +G   +    
Sbjct: 470 LLQFEIMSIYKNFITKVSTGRKLSFDKVSDIAGGKVYSGATAKNLGLVDELGNLSDAIAY 529

Query: 237 LYALGVDQSI--RKIKDWNPPKNYWFCDLKNLSISSLLED 274
              L        + IK     K      L        +  
Sbjct: 530 AAKLADCDGYSTKVIKRPLSYKEELLKYLMEAKAEMNISS 569



 Score = 63.1 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 69/202 (34%), Gaps = 11/202 (5%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHE 105
           I     +I  +++ + D     +   LS   G S+        A+Q+ K     +     
Sbjct: 85  IVSVSSIIRALKQAAYDRRIDCVFFDLSGLSGWSSGYFSDFAAALQEYKKSGKKLYVFSN 144

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE-- 163
             + A Y ++  ++ I+      V   G   +  +     +K  +    V++   K+   
Sbjct: 145 SYSLAKYYLASFADEIILDPLGSVDLSGFYNESLFFGGMEEKFDIHWNVVQAGAYKSMAE 204

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTG 215
                E++    +  + +  + +  +++ V+ +RN+P D           +L        
Sbjct: 205 TYSQKEMSEGVKENHRALFTNIWENYIKEVATNRNLPTDVILHYVDNYLDLLKTHNGDPA 264

Query: 216 AEAKKVGLIDVVGGQEEVWQSL 237
             A    L+  +   E+    L
Sbjct: 265 ETALSAKLVTKIASYEDAEVDL 286


>gi|241758993|ref|ZP_04757105.1| protease [Neisseria flavescens SK114]
 gi|241320814|gb|EER57047.1| protease [Neisseria flavescens SK114]
          Length = 331

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 118/286 (41%), Gaps = 16/286 (5%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDN------SPHVARIAIRGQIEDSQE-----LI 54
           +  +  +  ++++    + F  +            S H A I + G+I +  +     L 
Sbjct: 45  RIWRNIWRGIAVLIFLSLIFGLAEEEGKTTSIHARSEHTAVIDLTGEIGNDIDDQVQILR 104

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAG 111
           + +E    + +A A+I+  +SPGGS       F  ++++K     I       +M AS  
Sbjct: 105 DSMEAAYENGNAKAIIIRANSPGGSPVVSNTAFNEVRRLKAEHKDIPVYLVAEDMCASGC 164

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I A  +S+VGSIGV+         +DK GV  +   +   K    PF+   
Sbjct: 165 YYIAAAADKIYADPSSIVGSIGVIGGGFDFTGLMDKAGVKRRLKTAGSNKGMGDPFTPET 224

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGG 229
           P   Q+ + ++   +  F++ V   R           +  GRI+TG EAK+VGLID  G 
Sbjct: 225 PAQTQIWETMLGDIHQEFIKAVKLGRGTRLKDKQYPDVFSGRIYTGKEAKQVGLIDDFGS 284

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
              V + +       +     D++   +  F       +   L + 
Sbjct: 285 IYSVARDVVKAPELVNYTPQDDFSKMLSRRFGAEVKAKVKETLSEI 330


>gi|297839273|ref|XP_002887518.1| hypothetical protein ARALYDRAFT_476539 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333359|gb|EFH63777.1| hypothetical protein ARALYDRAFT_476539 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 676

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/264 (24%), Positives = 115/264 (43%), Gaps = 16/264 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSL 73
           W+  +      +A I   G I               +++LIE+I  +       A I+ +
Sbjct: 364 WTLGLSGGRDQIAIIRAGGSISRVKGPLSTPGSAIIAEQLIEKIRSVRESKKFKAAIIRI 423

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
            SPGG A A + ++R I+ +   KPVI  + ++AAS GY ++ A+N IVA   +L GSIG
Sbjct: 424 DSPGGDALASDLMWREIKLLAETKPVIASMSDVAASGGYYMAMAANTIVAENLTLTGSIG 483

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-SEVNPKAVQMMQDVVDSSYHWFVRL 192
           V+     +    +K+G + +++                 P+  ++ +     +Y  F   
Sbjct: 484 VVTARFTLAKLYEKIGFNKETISRGKYAELLGAEERPFKPEEAELFEKSAQHAYQLFRDK 543

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--K 250
            + SR++P DK   ++ GR+WTG +A   GL+D +GG                 +K+   
Sbjct: 544 AALSRSMPVDKMEEVAQGRVWTGRDAHSRGLVDALGGLSRAIAIAKQKANIPLNKKVTLV 603

Query: 251 DWNPPKNYWFCDLKNLSISSLLED 274
           + + P       L  +  S +  D
Sbjct: 604 ELSRPSTSLPDILSGIGSSVIGVD 627



 Score = 89.3 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 95/286 (33%), Gaps = 17/286 (5%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDS 65
           +  + +               V  + +RGQI D             +L E   + + D  
Sbjct: 105 IFVVKLRMLFAYPWQRVRKGSVLTMTLRGQISDQLKSRFNSGLSLPQLSENFVKAAYDPR 164

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
              + + +          E + R I   K     I     +     + + CA N + A  
Sbjct: 165 IAGVYLHIDPLSCGWGKVEELRRHILDFKKSGKFIVGYISICGLKEFYLGCACNELYAPP 224

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVD 183
           ++     G+  Q  ++    +K+G+  +  +    K+  +      ++ +  +M+  ++D
Sbjct: 225 SAYSFLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLSRKNISEENYEMLSVLLD 284

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
           + Y  ++  VS+S     +      +  ++   + K+ GLI  +   +EV   L      
Sbjct: 285 NIYANWLDGVSDSTGKKREDVENFINQGVYEIEKLKEEGLIKDIRYDDEVIAMLKERLGV 344

Query: 244 QSIRKIKDWNPPK----NYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           +  +K+   +  K      W   L        +      + + K  
Sbjct: 345 EKDKKLPTVDYKKYSGVKKWTLGLSGGRDQIAIIRAGGSISRVKGP 390


>gi|319638866|ref|ZP_07993624.1| protease [Neisseria mucosa C102]
 gi|317399770|gb|EFV80433.1| protease [Neisseria mucosa C102]
          Length = 331

 Score =  117 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 120/285 (42%), Gaps = 13/285 (4%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIEDSQE-----LIE 55
           + + I     +L  ++L          ++ V+  S H A I + G+I +  +     L +
Sbjct: 46  IWRNIWRGVAVLIFLSLIFGLAEEEGKTTSVQARSEHTAVIDLTGEIGNDIDDQVQILRD 105

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGY 112
            +E    + +A A+I+  +SPGGS       F  ++++K     I       +M AS  Y
Sbjct: 106 SMEAAYENGNAKAIIIRANSPGGSPVVSNTAFNEVRRLKAEHKDIPVYLVAEDMCASGCY 165

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            I+ A++ I A  +S+VGSIGV+         +DK GV  +   +   K    PF+   P
Sbjct: 166 YIAAAADKIYADPSSIVGSIGVIGGGFDFTGLMDKAGVKRRLKTAGSNKGMGDPFTPETP 225

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
              Q+ + ++   +  F++ V   R           +  GRI+TG EAK+VGLID  G  
Sbjct: 226 AQTQIWESMLGDIHQEFIKAVKLGRGARLKDKQYPDVFSGRIYTGKEAKQVGLIDDFGSI 285

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
             V + +       +     D++   +  F       +   L + 
Sbjct: 286 YSVARDVVKAPELVNYTPQDDFSKMLSRRFGAEVKAKVKETLSEI 330


>gi|328957466|ref|YP_004374852.1| putative signal peptide peptidase SppA [Carnobacterium sp. 17-4]
 gi|328673790|gb|AEB29836.1| putative signal peptide peptidase SppA [Carnobacterium sp. 17-4]
          Length = 345

 Score =  117 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 66/256 (25%), Positives = 125/256 (48%), Gaps = 16/256 (6%)

Query: 14  MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-------------LIERIERI 60
           +L  +  TV+  S     + +   +  +++ G I D Q               ++++E++
Sbjct: 43  LLGFLGTTVLEESLLEAGDTSK-RIVLLSVDGTILDGQTSGFTGDSVYDHDLFLQQLEQV 101

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCAS 118
             DD+  A+++S+++PGG  Y    I   + +++    KP+   +  MAAS GY IS ++
Sbjct: 102 LVDDTIKAIVLSVNTPGGGTYESAQIKDKLVEIQETTEKPIYVSMGSMAASGGYYISASA 161

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
             I A+E +L GSIGV+          +K+GV   ++KS   K   S    +  +  +++
Sbjct: 162 EKIFASEETLTGSIGVIMSGTNFSELFEKIGVDDTTIKSGEFKDIGSSTRTMTEEDAEIL 221

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           Q +V++SY  FV ++ E R +       ++DGRI+ GA+A   GL+D +G QE+  +++ 
Sbjct: 222 QTMVNTSYDRFVDVIVEGRGMDEAVVRTIADGRIYDGAQAVSNGLVDEIGYQEDALEAIK 281

Query: 239 ALGVDQSIRKIKDWNP 254
                +         P
Sbjct: 282 KDYDLEDAEIFTYQGP 297


>gi|56964512|ref|YP_176243.1| signal peptidase SppA [Bacillus clausii KSM-K16]
 gi|56910755|dbj|BAD65282.1| signal peptidase SppA [Bacillus clausii KSM-K16]
          Length = 328

 Score =  117 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 17/244 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSP 76
              D S  +A + + G I ++                ++   +     +   +I+++ SP
Sbjct: 48  QEGDPSGSIALLEVNGAIINTTSDSLFSAEGYNHSNFMDLFYQTMSSPNVEGIIIAVDSP 107

Query: 77  GGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG       I  A+ + +    KPV   +  MAAS GY ++  +  I A   +L GSIGV
Sbjct: 108 GGGVLESAEIHDAVIEAQENYGKPVYISMGSMAASGGYYLAAPAEQIFAYPQTLTGSIGV 167

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +     +   LDK+GV     KS P K   S       +  +++Q +VD  Y  FV +++
Sbjct: 168 IMSSLNITELLDKIGVEETVYKSGPYKDMMSGTRPPTEEEDEILQSIVDEYYDEFVEVIA 227

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
             R +  ++   L DGRI+TG +A + GLID +G   +V  ++       S  ++    P
Sbjct: 228 NGRGMDEERVRELGDGRIYTGRQALEAGLIDELGSINDVIAAMQRDLG--SNYQVIAIEP 285

Query: 255 PKNY 258
            +  
Sbjct: 286 KQGL 289


>gi|289642492|ref|ZP_06474636.1| signal peptide peptidase SppA, 36K type [Frankia symbiont of
           Datisca glomerata]
 gi|289507666|gb|EFD28621.1| signal peptide peptidase SppA, 36K type [Frankia symbiont of
           Datisca glomerata]
          Length = 689

 Score =  117 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 108/249 (43%), Gaps = 3/249 (1%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            +RG    S  L        RD+   A +  + SPGGS  A + I R +++ +     + 
Sbjct: 377 PLRGPAMTSDALTAAFRAAGRDEDVAAAVFRVDSPGGSYVASDLIRREVERFQATGRPVV 436

Query: 102 -EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160
             +  +AAS GY ++  ++ IVA   +L GSIGV      V+  LDK+GV   +V     
Sbjct: 437 VSMGSVAASGGYFVALGADAIVAHPGTLTGSIGVFGGKQVVRELLDKIGVRFGAVAEGEN 496

Query: 161 KAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKK 220
               SP  E +P   + + + +D  Y  FV  V+  R +  +    ++ GR+WTGA+A +
Sbjct: 497 ALMTSPRREFSPAERKKLDEFLDRVYEDFVTKVAAGRKMTPEAVHEVARGRVWTGADAHE 556

Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            GL+DV+ G  +  +  +      +    +    PK      L+    S   +     + 
Sbjct: 557 RGLVDVLVGLSQACELAWEKAGLPTSVTPRLRVLPKLALADRLRPPRSSE--DPAAAGVG 614

Query: 281 QTKVQGLWA 289
              + G  +
Sbjct: 615 GVPLAGPLS 623



 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 80/192 (41%), Gaps = 7/192 (3%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
             + +++ + R   DD A  LI  ++  G      + I  A+   +          +   
Sbjct: 53  SLRTVVDGLRRAREDDRAATLIARIAPCGTPLARVQEIRDAVIAFREAGGTAFAYADAFG 112

Query: 109 SA-----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
                   Y ++CA + I  A    +G  GV  + P+++  LD+LG+ I+  +    K  
Sbjct: 113 EFGGGTVPYYLACAFDQIWLAPPGELGLTGVALETPFLRDALDRLGIEIQVGQRHEYKNA 172

Query: 164 PSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221
            + F   +      +  + +V SS    V  ++ +R +   +   L D    +  +A++ 
Sbjct: 173 VNTFVERDFTAAHREASERIVVSSLSMIVDGIATARGLSPARVRELIDNAPLSAEQARRG 232

Query: 222 GLIDVVGGQEEV 233
           GL+D +G ++EV
Sbjct: 233 GLVDRLGYRDEV 244


>gi|310778441|ref|YP_003966774.1| signal peptide peptidase SppA, 67K type [Ilyobacter polytropus DSM
           2926]
 gi|309747764|gb|ADO82426.1| signal peptide peptidase SppA, 67K type [Ilyobacter polytropus DSM
           2926]
          Length = 578

 Score =  117 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 108/244 (44%), Gaps = 16/244 (6%)

Query: 32  EDNSPHVARIAIRGQIEDS------------QELIERIERISRDDSATALIVSLSSPGGS 79
           + +   +A I   G+I  S              +I  +    RD +   +++ + SPGGS
Sbjct: 295 QSSGKKIAVIYGDGEILYSNSGRGAQQSITPDTIISELNMAVRDKNVVGIVLRIDSPGGS 354

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           A A E I   I+ +   KPV   +   +AS GY IS + + I A   ++ GSIGV+   P
Sbjct: 355 ALASEVINAKIRSI--EKPVYVSMGGTSASGGYYISASGDRIFAERDTITGSIGVVSLVP 412

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            V     KLG+ I+SV+   +    S    +     + + +     Y  F   VS  RNI
Sbjct: 413 DVSELAGKLGIKIESVQKGKLSGIYSITDGMTKGERERIYESSSKIYSEFKERVSSGRNI 472

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR--KIKDWNPPKN 257
           P  +   L+ GR+W G EA + GL+D +GG ++  + +            +I+  NP + 
Sbjct: 473 PMSQMESLAGGRVWLGEEALEKGLVDGIGGLQDTIKIMAKDLQLSEYNVVEIRRENPFEK 532

Query: 258 YWFC 261
            +  
Sbjct: 533 LFMN 536



 Score = 70.8 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 102/267 (38%), Gaps = 29/267 (10%)

Query: 1   MEFVLKKIKTRYV----MLSLVTLTVVYFSWSSHVEDN------------------SPHV 38
           + F++K+I +  +    ++ ++ + +  F   + VE                       +
Sbjct: 11  LLFIMKEIASFLIKIVMVMVILIILLTVFVPKTPVEKAPIRKNTYIELDLSNPVGERGSL 70

Query: 39  ARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
           +   I G+  +   ++  +++   D     LI+ + S   +    E + R I++ +    
Sbjct: 71  SIFTIEGEKVNFYNMLNYLDKGKNDQRIDGLILKVDSVALNRAQVEELGRKIKEYREVGK 130

Query: 99  VITEVHEMAASAGYLISCASNIIVA--AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
            +        +  Y ++  ++ I+   +  +     G   + PY+K   DK+G+    + 
Sbjct: 131 KVYAFSRGFQNRNYSLAVNADEIIMPPSRGAGSNISGYFMELPYMKRLSDKIGIKYDVIH 190

Query: 157 SSPMKAE--PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIW 213
               K+        E++P+  + +  ++D  Y+ FV+ VS SRNI        + +G   
Sbjct: 191 VGDYKSYGENYVREEMSPEFRENITRLLDRIYYNFVQDVSVSRNIDERTLSRKILNGDFV 250

Query: 214 TGA--EAKKVGLIDVVGGQEEVWQSLY 238
                + K+  L+D +    E  +   
Sbjct: 251 LADAFKMKEEKLVDSLMYYHEFLKERK 277


>gi|170748571|ref|YP_001754831.1| peptidase S49 [Methylobacterium radiotolerans JCM 2831]
 gi|170655093|gb|ACB24148.1| peptidase S49 [Methylobacterium radiotolerans JCM 2831]
          Length = 285

 Score =  117 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 65/217 (29%), Positives = 102/217 (47%), Gaps = 12/217 (5%)

Query: 38  VARIAIRGQIEDSQELIE---------RIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           VA + + G I     +            +ER        A+ + ++SPGGS      I R
Sbjct: 24  VAVVRLSGTIGAVSPIRPGLSIGSVAGSLERAFGMPGVKAVALVINSPGGSPAQSHLIHR 83

Query: 89  AIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
            I+ + + K  PVI  V ++AAS GY+I+CA++ IVA  TS+VGSIGV+         L+
Sbjct: 84  RIRALADEKGVPVIAFVEDVAASGGYMIACAADEIVADPTSIVGSIGVVSAGFGFHGLLE 143

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           KLGV  +       K+   PF   +P  V+ ++ +       F  LV+  R     +   
Sbjct: 144 KLGVERRVHTQGEAKSMLDPFRPEDPADVERLKRIQADVQDLFTGLVTARR-PTLSRAEN 202

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
           L  G +WTG +A  +GL+D +G      ++ +   VD
Sbjct: 203 LFTGAVWTGRQALPLGLVDALGDVRTAMRARFGDKVD 239


>gi|261379532|ref|ZP_05984105.1| signal peptide peptidase SppA [Neisseria subflava NJ9703]
 gi|284797999|gb|EFC53346.1| signal peptide peptidase SppA [Neisseria subflava NJ9703]
          Length = 331

 Score =  117 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 120/285 (42%), Gaps = 13/285 (4%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIEDSQE-----LIE 55
           + + I     +L  ++L          ++ ++  S H A I + G+I +  +     L +
Sbjct: 46  IWRNIWRGVAVLIFLSLIFGLAEEEGKTTSIQARSEHTAVIDLTGEIGNDIDDQVQILRD 105

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGY 112
            +E    + +A A+I+  +SPGGS       F  ++++K     I       +M AS  Y
Sbjct: 106 SMEAAYENGNAKAIIIRANSPGGSPVVSNTAFNEVRRLKAEHKDIPVYLVAEDMCASGCY 165

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            I+ A++ I A  +S+VGSIGV+         +DK GV  +   +   K    PF+   P
Sbjct: 166 YIAAAADKIYADPSSIVGSIGVIGGGFDFTGLMDKAGVKRRLKTAGSNKGMGDPFTPETP 225

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
              Q+ + ++   +  F++ V   R           +  GRI+TG EAK+VGLID  G  
Sbjct: 226 AQTQIWETMLGDIHQEFIKAVKLGRGARLKDKQYPDIFSGRIYTGKEAKQVGLIDDFGSI 285

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
             V + +       +     D++   +  F       +   L + 
Sbjct: 286 YSVARDVVKAPELVNYTPQDDFSKMLSRRFGAEVKAKVKETLSEI 330


>gi|57641099|ref|YP_183577.1| endopeptidase IV [Thermococcus kodakarensis KOD1]
 gi|57159423|dbj|BAD85353.1| predicted endopeptidase IV, S49 family [Thermococcus kodakarensis
           KOD1]
          Length = 334

 Score =  117 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 106/232 (45%), Gaps = 3/232 (1%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGS 79
           + +             +A + I G I+D    ++I  +  ++ ++S   +++ + SPGG 
Sbjct: 73  IAFLQRLVSSNQGGTTIAVVPIFGIIDDYTALQVIPLLRNLAMNESVGGVLLWIESPGGV 132

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
                 I   I+K+   KPV+    ++ AS GY I+  +  IVA+  + VGSIGV++ + 
Sbjct: 133 VGPVINIHSEIKKLSLVKPVVAYSGDIIASGGYYIAVGAQKIVASPLAEVGSIGVIYVHY 192

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            ++   +  G+ +   K+   K   + + ++ P+  + + ++V++ +  F+  VSE RN+
Sbjct: 193 DLEKNYEMNGIKVNVFKTGKHKDMGAEWRDLTPEEREKITEMVNTYFQAFISAVSEGRNM 252

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
             D+    S G  W         L+D +GG +     L  L      + +  
Sbjct: 253 TIDEVKNFSTGETWFAENVTGA-LVDELGGMDTAIDVLEKLMNVSGAKVVVY 303


>gi|299535443|ref|ZP_07048765.1| putative signal peptide peptidase sppA [Lysinibacillus fusiformis
           ZC1]
 gi|298729204|gb|EFI69757.1| putative signal peptide peptidase sppA [Lysinibacillus fusiformis
           ZC1]
          Length = 337

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 130/293 (44%), Gaps = 23/293 (7%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDN-------SPHVARIAIRGQIED-------- 49
           +  I   +    L     +    S  V +N          +A + + G I+D        
Sbjct: 22  INTIFALFKADFLGNFDSLMAGNSLDVYENVIEGENFDKRIAYLKVDGTIQDIGSSTLWQ 81

Query: 50  -----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV--ITE 102
                 Q  +E+++ I  D+S   +++S++SPGG       I++ + K+K  + +     
Sbjct: 82  PVAYDHQFFLEQLDNILYDESIQGVVLSVNSPGGGVKESADIYKKLLKIKEERQIPIYVS 141

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
           +  MAAS GY IS  ++ I A   ++ GSIGV+ Q    +   +K+GV  ++ KS   K 
Sbjct: 142 MDSMAASGGYYISAPADKIFAHRDTITGSIGVIMQSINYQELAEKVGVKFETFKSGEHKD 201

Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVG 222
             SP  EV  +   MMQD+++ +Y  FV +V + RN+   +   ++DGRI  G +A + G
Sbjct: 202 MLSPMREVTAEERAMMQDMINETYEEFVDIVEQGRNMSEAEVKKVADGRILGGTKALEAG 261

Query: 223 LIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
           LID +G +E    +L      +    + +++     W   +     S      
Sbjct: 262 LIDEIGDEEAAIAALREDYGLEDAA-LFEYSYDMGGWQSYVGMKIGSMFGPSA 313


>gi|296282880|ref|ZP_06860878.1| periplasmic serine protease [Citromicrobium bathyomarinum JL354]
          Length = 628

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 115/256 (44%), Gaps = 9/256 (3%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------ELIERIERISRDDSATALIVSL 73
           +  +      +D+   +  + I G+I D          + I  +   + +D    L+V +
Sbjct: 298 LATWLADKPFDDSGDAIGVVTIAGEIVDGDAGPGTAGGDRIADLLDDALNDDLKGLVVRV 357

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVI-TEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
            SPGGS  A EAI  AI + K +   +   +  +AAS GY +S  ++ I A   ++ GSI
Sbjct: 358 DSPGGSVLASEAIREAILRHKAKGIPVAVSMANVAASGGYWVSTPADRIFAEPETITGSI 417

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           G+    P  +    K+GVS   V ++P+  +P      NP+  Q++Q  +++ Y  F+ +
Sbjct: 418 GIFAVLPTFEKLASKVGVSADGVSTTPLSGQPDFVGGFNPETEQILQASIENGYDRFLGI 477

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           V++SR     +   +  GR+W G  A++ GL+D  G  ++    +      +       +
Sbjct: 478 VAKSRGKTPAQIDAIGQGRVWDGGTARQNGLVDQFGDLDDALAWVAGKAGLEDDAYHARF 537

Query: 253 NPPKNYWFCDLKNLSI 268
              ++  +  L    +
Sbjct: 538 LGSESSEYQTLLRQLV 553



 Score = 76.6 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 76/208 (36%), Gaps = 9/208 (4%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
           D Q+L+  ++  + DD   A+++ + +  G  A     +  A+ +V+     +       
Sbjct: 80  DVQDLVHALDTAAEDDRVKAVVLDMRTFLGAGAVHLREMGAALDRVRAADKPVLAYGMAY 139

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           +  G  ++  ++ +           G   +  Y    LDKLGV+ +  K    K+   P+
Sbjct: 140 SDDGLRLAAHASEVWLDPLGGAMIAGPGGKRLYYGDLLDKLGVNARVFKVGTYKSAVEPY 199

Query: 168 --SEVNPKAVQMMQDVVDSSYHWFVRLVSESR-NIPYDKTLVLSDGRIWT-----GAEAK 219
             + ++  A +  +++    +  +   V ++R  I  ++        + +        A 
Sbjct: 200 LGNSMSEPARENARELYGELWSEWQASVKKARPKIDIERVAQTPAEWVASANGDIAKAAV 259

Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIR 247
             G++D +G        +  +       
Sbjct: 260 AAGMVDKLGSWTAFGDRVAEIAGKDKSD 287


>gi|225077079|ref|ZP_03720278.1| hypothetical protein NEIFLAOT_02132 [Neisseria flavescens
           NRL30031/H210]
 gi|224951636|gb|EEG32845.1| hypothetical protein NEIFLAOT_02132 [Neisseria flavescens
           NRL30031/H210]
          Length = 331

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 118/286 (41%), Gaps = 16/286 (5%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDN------SPHVARIAIRGQIEDSQE-----LI 54
           +  +  +  ++++    + F  +            S H A I + G+I +  +     L 
Sbjct: 45  RIWRNIWRGVAVLIFLSLIFGLAEEEGKTTSIHARSEHTAVIDLTGEIGNDIDDQVQILR 104

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAG 111
           + +E    + +A A+I+  +SPGGS       F  ++++K     I       +M AS  
Sbjct: 105 DSMEAAYENGNAKAIIIRANSPGGSPVVSNTAFNEVRRLKAEHKNIPVYLVAEDMCASGC 164

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I A  +S+VGSIGV+         +DK GV  +   +   K    PF+   
Sbjct: 165 YYIAAAADKIYADPSSIVGSIGVIGGGFDFTGLMDKAGVKRRLKTAGSNKGMGDPFTPET 224

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGG 229
           P   Q+ + ++   +  F++ V   R           +  GRI+TG EAK+VGLID  G 
Sbjct: 225 PAQTQIWETMLGDIHQEFIKAVKLGRGARLKDKQYPDVFSGRIYTGKEAKQVGLIDDFGS 284

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
              V + +       +     D++   +  F       +   L + 
Sbjct: 285 IYSVARDVVKAPELVNYTPQDDFSKMLSRRFGAEVKAKVKETLSEI 330


>gi|114705272|ref|ZP_01438180.1| Clp protease:Peptidase U7:Na+/H+ antiporter NhaA [Fulvimarina
           pelagi HTCC2506]
 gi|114540057|gb|EAU43177.1| Clp protease:Peptidase U7:Na+/H+ antiporter NhaA [Fulvimarina
           pelagi HTCC2506]
          Length = 298

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 109/249 (43%), Gaps = 18/249 (7%)

Query: 38  VARIAIRGQIE-----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
           +  + + G I                +   +E+      + A+ V ++SPGGS      I
Sbjct: 21  IPTVRLSGAIMATGGGIERQVLSMAGVAPMLEKAFSQKGSPAVAVIVNSPGGSPVQSRLI 80

Query: 87  FRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           ++ I+ +    +K V+  V ++AAS GY+I+CA + I+A  +S+VGSIGV+         
Sbjct: 81  YKRIRDLAEDKKKRVLVFVEDVAASGGYMIACAGDEIIADPSSIVGSIGVVSGSFGFVEA 140

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           + KLG+  +   +   K    PF    P+ V+ ++ +    +  F+ LV  SR     + 
Sbjct: 141 ISKLGIERRVHTAGKNKVTLDPFQPEKPEDVERLKALQLDVHDTFIDLVKASRKNKLAEN 200

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             L  G  W+G +A  +GLID +G    V + LY    +  +     + P   +      
Sbjct: 201 DDLFTGLFWSGRQALDLGLIDRLGDLHSVVRELYGEKAEPKL-----YTPKTGFLGRTKP 255

Query: 265 NLSISSLLE 273
            + +   +E
Sbjct: 256 GVGVGVGIE 264


>gi|148655954|ref|YP_001276159.1| signal peptide peptidase SppA, 36K type [Roseiflexus sp. RS-1]
 gi|148568064|gb|ABQ90209.1| signal peptide peptidase SppA, 36K type [Roseiflexus sp. RS-1]
          Length = 571

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 63/208 (30%), Positives = 109/208 (52%), Gaps = 2/208 (0%)

Query: 41  IAIRGQ-IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV 99
           I + G+ I  S+ +I+ + +  R+    A+++ ++SPGGSA+  + I+R ++++  RKPV
Sbjct: 310 IPLIGELIAGSESIIQALRQAERNPRLAAVLLYINSPGGSAFDSDLIWREVRRLDRRKPV 369

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
           +  + ++AAS GY ++  +  I+A   ++ GSIGVL   P ++  L + GV+  ++    
Sbjct: 370 VAVMGDVAASGGYYVASGARTILAQPGAVTGSIGVLIIRPVIEGLLKRAGVNTVAIGRGA 429

Query: 160 MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAK 219
             A     +         ++ ++D SY  F + VS  RNIP      L+ GR+W+G EA 
Sbjct: 430 NSAFFVSDAP-AEAERSAVRALIDDSYALFKQRVSTGRNIPEPALEPLAGGRVWSGREAY 488

Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           + GLID  GG  E       L      R
Sbjct: 489 EYGLIDASGGVPEALLKAQELAGLPRDR 516



 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 97/221 (43%), Gaps = 6/221 (2%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
             L  R+E ++ D     +++ +++        E++ + I++ + R   +        + 
Sbjct: 63  SNLRHRLEWLASDPQVRGIVLDINTLTCGWATIESLHQEIRRFRERGKRVVARLTNPDTK 122

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FS 168
            Y+ +CA+++IVA   +L+   G+     ++K  L K+ +S++    SP K    P    
Sbjct: 123 TYVAACAADLIVAPPAALLNVTGLYTGVRFLKDALAKVDLSVEVTAVSPYKTAGDPLARP 182

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
           +++P+  + ++ ++D  Y   V  ++ +R    D+   L D   W+   A++ GLID V 
Sbjct: 183 DMSPENREQIERLLDLRYAAIVETIATARRKTPDEVRALIDTAPWSAQRAQEAGLIDAVL 242

Query: 229 GQEEVWQSLYALGVDQS----IRKIKDWNPPKNYWFCDLKN 265
            ++E+   L +            +I +W   +      +  
Sbjct: 243 YEDELPAFLASQAGKDGGAGSEPQIVEWAQARRALRLPMLR 283


>gi|148553446|ref|YP_001261028.1| signal peptide peptidase SppA, 67K type [Sphingomonas wittichii
           RW1]
 gi|148498636|gb|ABQ66890.1| signal peptide peptidase SppA, 67K type [Sphingomonas wittichii
           RW1]
          Length = 626

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 70/262 (26%), Positives = 122/262 (46%), Gaps = 11/262 (4%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSA 66
               + +  ++ +   +     +  + + G I D            + + +         
Sbjct: 291 GFKAIPLDRWASAHPEKSGGTPIGVLTVAGDIVDGDAPPGAAGGTTISDLLLDELGRKRT 350

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAE 125
            AL+V + SPGGS    E I  AI + K    PV+  +  +AAS GY IS  ++ I+A  
Sbjct: 351 KALVVRVDSPGGSVTGAETIRSAILQAKGLGLPVVVSMGGLAASGGYWISTPADRIIADP 410

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
            ++ GSIGV    P  +  L KLG+S   VK++P+  EP  F   +P+   MMQ  ++  
Sbjct: 411 ATITGSIGVFGILPTFQGSLAKLGLSADGVKTTPLSGEPDVFRGTSPQFDAMMQGSIEDV 470

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  F  LV++SR +P ++   +++GR+W GA A+++GL+D  G  ++       L     
Sbjct: 471 YRRFTGLVAQSRKLPIERVREIAEGRVWAGATARQIGLVDGFGSVDDAIAEAAKLAKLDP 530

Query: 246 IR-KIKDWNPPKNYWFCDLKNL 266
            + +      P N W   +++L
Sbjct: 531 AKVRPLYIEKPLNPWKEMIRSL 552



 Score = 73.5 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 87/269 (32%), Gaps = 31/269 (11%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------- 50
           +K       ML       +  S   +    S     I + G + +               
Sbjct: 14  IKDGLVLIAMLIFFGTLFLALSIKPNSTLPSSGALVIDLDGTLVEQPAETDPLTLLAGNG 73

Query: 51  --------QELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRKPVIT 101
                   ++L   ++  +  +   A+++ L S  G       A  RA+ K +     I 
Sbjct: 74  GIARETRLRDLERALQAAAESNGVKAIVLDLDSFAGGEQATIAAAGRALDKARAAGKPIL 133

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                    GY ++  +  +       V   G      Y K  +D+LG++ K  +    K
Sbjct: 134 AYATGYGDDGYQLASHATEVWLNPLGGVILTGPGGSRLYYKGLMDRLGITAKIYRVGAFK 193

Query: 162 AEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESR-NIPYDKTLV-----LSDGRIW 213
           +   P+   + +P+A +  Q + ++ +  +   V ++R        +      + +    
Sbjct: 194 SAVEPYMRSDQSPEAREANQALANALWSTWTAEVGKARPKAKLAAYVERPTAIIGEAGGR 253

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
               A   GL+D +G +      + A+  
Sbjct: 254 MSQAALNAGLVDRLGDRNAFDSRVAAIAG 282


>gi|326789880|ref|YP_004307701.1| signal peptide peptidase SppA, 36K type [Clostridium lentocellum
           DSM 5427]
 gi|326540644|gb|ADZ82503.1| signal peptide peptidase SppA, 36K type [Clostridium lentocellum
           DSM 5427]
          Length = 315

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/271 (22%), Positives = 123/271 (45%), Gaps = 11/271 (4%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVS 72
            +        S +      +  I ++G I + +        I RI  +  D     + + 
Sbjct: 32  AVISGLTGTESKMPRVGNVIDTIYVQGTIAEGEMNYNHAWTINRINELMYDKQNKGIFLY 91

Query: 73  LSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           ++SPGG  Y  + ++  +++ K    +PV   + + AAS G  +  A++ I A   ++ G
Sbjct: 92  VNSPGGGIYESDELYLKLKEYKEVTERPVYAYMAQTAASGGLYVCMAADKIYANRMTMTG 151

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+          + LG+  +++ S   KA     + +  +  Q++Q ++D SY+ FV
Sbjct: 152 SIGVIMSMTDTTGLQELLGIKTENIVSGENKA---MGNPLTDEQRQILQTMIDESYNIFV 208

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
            +V+E+R++   K   L+DGR+++  +AK +GLID VG  E+   ++ +    +S     
Sbjct: 209 DVVAENRSLTEAKVKELADGRVYSALQAKDLGLIDEVGSVEDAMHAMMSENQLESCGWYS 268

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
           +  P        L   + S  L      +++
Sbjct: 269 EDAPTVGLLDMLLGAKTESKDLLSQFSEIQK 299


>gi|153007859|ref|YP_001369074.1| peptidase S49 [Ochrobactrum anthropi ATCC 49188]
 gi|151559747|gb|ABS13245.1| peptidase S49 [Ochrobactrum anthropi ATCC 49188]
          Length = 290

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 62/265 (23%), Positives = 107/265 (40%), Gaps = 18/265 (6%)

Query: 38  VARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           +  + + G I                   +E+   D    A+ +SL+SPGGS      I+
Sbjct: 20  IPVVRLHGAIMSGGSAFRPMLSLASTAAVLEKAFTDKETPAVAISLNSPGGSPVQSRLIY 79

Query: 88  RAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           R I+ +     K V   V ++AAS GY+I+ A + I+A  +S+VGSIGV+         L
Sbjct: 80  RRIRDLAAEHQKKVFIFVEDVAASGGYMIALAGDEIIADPSSIVGSIGVVSASFGFPELL 139

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV  +   +   K    PF       ++ ++ +    +  F+ +V E R     +  
Sbjct: 140 KKIGVERRVYTAGSNKVTLDPFQPEKKTDIERLKSLQLEIHETFIDMVKERRGTKLAEDK 199

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L  G  WTG +  ++GLID +G      +  Y         K+K     +      +  
Sbjct: 200 DLFTGLFWTGIKGHELGLIDGLGDMRSFLRKTYG-----DKVKLKLVEQKRGLLGRKMPG 254

Query: 266 LSISSLLEDTIPLMKQTKVQGLWAV 290
           + ++ L       +      GL +V
Sbjct: 255 IDMA-LGNLEPASIAAHLGDGLLSV 278


>gi|42563213|ref|NP_565077.2| SPPA; serine-type endopeptidase [Arabidopsis thaliana]
 gi|12325146|gb|AAG52522.1|AC016662_16 putative protease IV; 48713-44371 [Arabidopsis thaliana]
 gi|332197414|gb|AEE35535.1| signal peptide peptidase [Arabidopsis thaliana]
          Length = 677

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 67/264 (25%), Positives = 116/264 (43%), Gaps = 16/264 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSL 73
           W+  +      +A I   G I               +++LIE+I  +       A I+ +
Sbjct: 365 WTLGLTGGRDQIAIIRAGGSISRVKGPLSTPGSAIIAEQLIEKIRSVRESKKYKAAIIRI 424

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
            SPGG A A + ++R I+ +   KPVI  + ++AAS GY ++ A+N IVA   +L GSIG
Sbjct: 425 DSPGGDALASDLMWREIKLLAETKPVIASMSDVAASGGYYMAMAANAIVAENLTLTGSIG 484

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-SEVNPKAVQMMQDVVDSSYHWFVRL 192
           V+     +    +K+G + +++               + P+  ++ +     +Y  F   
Sbjct: 485 VVTARFTLAKLYEKIGFNKETISRGKYAELLGAEERPLKPEEAELFEKSAQHAYQLFRDK 544

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--K 250
            + SR++P DK   ++ GR+WTG +A   GLID VGG                 +K+   
Sbjct: 545 AALSRSMPVDKMEEVAQGRVWTGKDAHSRGLIDAVGGLSRAIAIAKQKANIPLNKKVTLV 604

Query: 251 DWNPPKNYWFCDLKNLSISSLLED 274
           + + P       L  +  S +  D
Sbjct: 605 ELSRPSTSLPDILSGIGSSVIGVD 628



 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 88/253 (34%), Gaps = 13/253 (5%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDS 65
           +  +                 V  + +RGQI D             +L E   + + D  
Sbjct: 106 IFVVKFRMLFAYPWQRVRKGSVLTMTLRGQISDQLKSRFNSGLSLPQLSENFVKAAYDPR 165

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
              + + +          E I R I   K     I     +     Y + CA N + A  
Sbjct: 166 IAGVYLHIDPLSCGWGKVEEIRRHILNFKKSGKFIVGYISICGLKEYYLGCACNELFAPP 225

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVD 183
           ++     G+  Q  ++    +K+G+  +  +    K+  +      ++ +  +M+  ++D
Sbjct: 226 SAYSFLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLSRKSISEENYEMLSVLLD 285

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
           + Y  ++  VS++     +      +  ++   + K+ GLI  +   +EV   L      
Sbjct: 286 NIYSNWLDGVSDATGKKREDVENFINQGVYEIEKLKEAGLIKDIRYDDEVITMLKERLGV 345

Query: 244 QSIRKIKDWNPPK 256
           +  +K+   +  K
Sbjct: 346 EKDKKLPTVDYKK 358


>gi|66816573|ref|XP_642296.1| hypothetical protein DDB_G0278333 [Dictyostelium discoideum AX4]
 gi|60470359|gb|EAL68339.1| hypothetical protein DDB_G0278333 [Dictyostelium discoideum AX4]
          Length = 649

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 105/257 (40%), Gaps = 21/257 (8%)

Query: 33  DNSPHVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSPGG 78
                +A I   G I                S  L+  I   + D    A+++ ++S GG
Sbjct: 319 SQQGVIALINAEGTIHQGTSANKYNGGPSIGSDSLVLAIRSATLDKDVKAIVIRVNSGGG 378

Query: 79  SAYAGEAIFRAIQK-VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           S  A + +   I+   K  K ++  +    AS GY  +C ++ IVA   +L GSIGVL  
Sbjct: 379 SYIASDMVHHEIEASKKAGKKIVISMGTYCASGGYFFACNADKIVALGATLTGSIGVLTA 438

Query: 138 YPYVK-PFLDKLGVSIKSVKSSP-----MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
              +K  + +K+ V   ++  +P          S       K +  +   +D  Y  F  
Sbjct: 439 KFNLKGMWEEKVHVKFDALHLNPDGATDNSTYFSSLHNYTEKQLAEVNSYMDFIYEDFTS 498

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
            VS+ R +  D+   ++ GR+WTGA+A K+ L+D +GG +E  +    L    S  +   
Sbjct: 499 KVSKGRRLTRDQVEEIARGRVWTGAQALKLSLVDKLGGLKEAIEVAKELVGIASNVQPHV 558

Query: 252 WNPPKNYWFCDLKNLSI 268
              PK      L   S 
Sbjct: 559 VTYPKETVLSQLVASSA 575



 Score = 79.7 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 104/284 (36%), Gaps = 19/284 (6%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIA--IRGQIEDSQELIERIERIS 61
           ++K IK R     +   T++   +++ ++ +   ++ I   +   I   + L++ IE+ +
Sbjct: 47  LIKLIKNR-----IRNNTILEIDFTNTIDTSDVDISPIEKLLDPNIISFRSLLDAIEKAA 101

Query: 62  RDDSATALIVSLSS-PGGSAYAGEAIFRAIQKVKNRKPVIT-----EVHEMAASAGYLIS 115
            D     LIV LS     S    +    AI   K++               +    Y ++
Sbjct: 102 NDKRVIGLIVRLSGENQFSLANIQEFRNAISFFKSKGKRTVAFTDSFCEAGSGIGRYYMA 161

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPK 173
              + +  A +  +  I   + + ++K  L+KL +   ++     K          +   
Sbjct: 162 SIFHDVYMAPSGTLNLINTQYDFAFIKKTLEKLNIVPDTITRKEYKNALSGLVNEHLTEP 221

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
             + M  +  S Y   +  +++ R++  ++   L +   ++  +A    L+D     +EV
Sbjct: 222 EKESMNAIFKSLYEQIIEDIAKDRSLTKERVNELFESGPFSSDKALVNKLVDSTLYGDEV 281

Query: 234 ----WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273
               ++ L     + ++     +N      +      S   ++ 
Sbjct: 282 YTTTYEKLETTKKNSNLLYAHKYNAKTKPLYGKKFGRSQQGVIA 325


>gi|163732838|ref|ZP_02140283.1| peptidase, family S49, putative [Roseobacter litoralis Och 149]
 gi|161394198|gb|EDQ18522.1| peptidase, family S49, putative [Roseobacter litoralis Och 149]
          Length = 265

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 116/252 (46%), Gaps = 11/252 (4%)

Query: 33  DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
            + P +A I + G I        + + L   IE+        A+ + ++SPGGS      
Sbjct: 9   KSDPTIAVIRLAGVISAAGRGTLNDESLAPAIEKAFSRGKPAAVALEVNSPGGSPVQSSL 68

Query: 86  IFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           I   I+++   K  PVI  V ++AAS GY ++ A++ I + E+S+VGSIGV+        
Sbjct: 69  IGARIRRLAEEKGIPVIAFVEDVAASGGYWLAAAADEIYSDESSVVGSIGVISASFGAHE 128

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L + G+  +   +   K+   PF   NP+ V  ++ +++  +  F   VS  R+    +
Sbjct: 129 LLARQGIERRVYTAGKSKSMLDPFRPENPEDVARLKGLLEDIHGNFKDHVSARRSGKLPE 188

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              L  G +W G  A ++GLID +G  + +    +   V      ++   P  + +   +
Sbjct: 189 DRDLFTGEVWLGRRAAELGLIDGIGHLKPMMIERFGDKVKFRSYGVR--KPLLSRFGSRI 246

Query: 264 KNLSISSLLEDT 275
            + ++ S+ E +
Sbjct: 247 LDDTLHSIEERS 258


>gi|297181012|gb|ADI17213.1| periplasmic serine proteases (clpp class) [uncultured delta
           proteobacterium HF0070_10I02]
          Length = 524

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 63/277 (22%), Positives = 127/277 (45%), Gaps = 16/277 (5%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALI 70
             +    V      VA + + G + +             S +++  IE ++ ++   A++
Sbjct: 217 LLAKLPMVRKKKAIVAVVHLDGPVVERREQMPRSGRVIASDDVVPVIEELTDNEQIKAVV 276

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           ++++SPGGSA A + I R++  +K +KPV+  +  +AAS GY IS  ++ I A + ++ G
Sbjct: 277 LAVNSPGGSALASDLISRSVMALKEKKPVLASMGNVAASGGYYISAEAHEIWAHKATITG 336

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+     +   L KLGV    +  +P     +P +  +P+  +  +  +   Y  F+
Sbjct: 337 SIGVVGGKLVLGSALGKLGVHSSWMGPAPDPGLLAPHTRFHPEQRRRFRASLRRVYDRFI 396

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE---VWQSLYALGVDQSIR 247
            +V+  R    D+   ++ GR+WTG++A   GL+D +G  ++         +L  ++   
Sbjct: 397 SIVASGRGKTTDEIEPVAQGRVWTGSQAMDNGLVDSLGTLKDAVRAAAVRASLNPERIKT 456

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
               ++PPK             + L+  +       +
Sbjct: 457 IPVRFDPPKFGALSQFMRAGTHTPLDMAVGFAGADGL 493



 Score = 62.3 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 67/184 (36%), Gaps = 2/184 (1%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           +++++ +  IS+D     L + + +          I  AI+ V      +T      +  
Sbjct: 7   EKMLDTLHIISKDPKIMGLHIEVRTLRFGWSQLYEIHAAIRSVAESGTRVTAYLTSGSDR 66

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE--PSPFS 168
             L++ A++ I     + V   GV     +    L +LGV      +   K+       S
Sbjct: 67  EILLASAAHHITMPPPAEVYLTGVAASVRFYGSALQRLGVEADLESAGAYKSFGEAYTRS 126

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
              P+  + M  ++   +  ++  + + R++   +          +   A + GLID   
Sbjct: 127 APTPENREAMDHLLGDLHDNWLETLGQGRSMEVAQLDDALRSAPLSSENAVQRGLIDAAR 186

Query: 229 GQEE 232
             +E
Sbjct: 187 YADE 190


>gi|256374226|ref|YP_003097886.1| peptidase S49 [Actinosynnema mirum DSM 43827]
 gi|255918529|gb|ACU34040.1| peptidase S49 [Actinosynnema mirum DSM 43827]
          Length = 290

 Score =  116 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 62/271 (22%), Positives = 115/271 (42%), Gaps = 22/271 (8%)

Query: 35  SPHVARIAIRGQIE------------DSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
            P VA + + G I             ++Q +   + R    +   A+ + ++SPGG+   
Sbjct: 22  GPVVAAVRLHGVITPNPGPVAARGSLNAQSVESALTRAFEHERLVAVALLVNSPGGAPTQ 81

Query: 83  GEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
              I   ++++  ++  PV+    ++AAS GY ++CA++ I A  TSLVGSIGV+     
Sbjct: 82  SALIADRVRELAAKRRVPVLAFCEDVAASGGYWLACAADEIHAHPTSLVGSIGVVSSGFG 141

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           +   +++ GV  +   +   K    PF     + V  ++ +    +  F   V+E R   
Sbjct: 142 LTGLMERFGVERRVHSAGESKVRLDPFQPEKAEDVAWLEGLQSELHEQFKAWVTERRGRR 201

Query: 201 YD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
                  L  G +WTGA+A ++GL+D +G    V       G      +I    P +N  
Sbjct: 202 LAADAPDLFAGEVWTGAKALELGLVDGLGTLRGVI------GKRYPDAEIAIAEPRRNLL 255

Query: 260 FCDLKNLSISSLLEDTI-PLMKQTKVQGLWA 289
                  + S+   D +   +   + +  W+
Sbjct: 256 SRLGLGNAASTRSGDFVTQALASLEERARWS 286


>gi|323345102|ref|ZP_08085326.1| signal peptide peptidase SppA [Prevotella oralis ATCC 33269]
 gi|323094372|gb|EFZ36949.1| signal peptide peptidase SppA [Prevotella oralis ATCC 33269]
          Length = 589

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 114/274 (41%), Gaps = 17/274 (6%)

Query: 30  HVEDNSPHVARIAIRGQIED--------------SQELIERIERISRDDSATALIVSLSS 75
             ++    +A    +G I                S  + + +E++  DD   A+++ ++S
Sbjct: 294 PEKETGDEIAVYFAQGTIVQNAAAGLFSQSAQIVSTTVCKDLEQLMNDDDVKAVVIRVNS 353

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
            GG AYA E I+  + K+K +KPV+  + + AAS  Y +SC ++ IVA  T+L GSIG+ 
Sbjct: 354 GGGDAYASEQIWHQVAKLKTKKPVVISMGDYAASGAYYMSCVADWIVAQPTTLTGSIGIF 413

Query: 136 FQYPYVKPFL-DKLGVSIKSVKSSPMKAE-PSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
              P     +  KLGV    VK++            +N   +  +   V+  Y  F + V
Sbjct: 414 GVIPDYSGLVTQKLGVKFDEVKTNKNSGFGNILARPLNADEIGYLTAYVNRGYQLFRKRV 473

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           ++ R +   +   ++ G +W G +A    L+D +GG          L   +      ++ 
Sbjct: 474 ADGRRMSVPQVEKIAQGHVWLGQDALINRLVDQLGGLSTAVTKAAQLAKVKE-YHTTEYP 532

Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
              +       + +  S L++ +        +  
Sbjct: 533 AAPSILDQLFSSATRGSYLDEQLRTTLGDFYEPF 566



 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/325 (14%), Positives = 105/325 (32%), Gaps = 40/325 (12%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTV----------VYFSWSSHVEDNSPHVARIAIRGQIEDS 50
           M+   K +    V L + ++ V          +  + SS    +   V  + + G I++ 
Sbjct: 1   MKEFFKYVTATVVGLFVFSIVVTILCVMSLVGMVAADSSTKSVSENSVFVLNLAGTIQEQ 60

Query: 51  -------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
                               +++  I +   +D    + +       S    + I  A+ 
Sbjct: 61  GENNVLGQLTGNTLNNLGLDQILSGIRKARDNDRIKGIYIEAGLLETSYATLQEIRNALL 120

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
             K     I    +      Y +S  ++ I      ++   G+  Q  ++K    K G+ 
Sbjct: 121 DFKKHGKWIVTYADTYTQGTYYVSSVADKIFINPQGMLDWHGLSAQPMFIKDVAAKFGIR 180

Query: 152 IKSVKSSPMK--AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
            + VK    K   E      ++    + +   +D ++    + V++SR +  D     +D
Sbjct: 181 YQVVKVGAYKSATEYYTEERMSDANRRQVTAFIDGTWRNVCKEVAQSRKVSVDSLNAYAD 240

Query: 210 G-RIWTGAE-AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN-------PPKNYWF 260
              I+ G E  KK  L+D +   + V   +  +        I   +       P K    
Sbjct: 241 RLLIFEGTENLKKYKLVDGLIYADNVKTEVKKMLKIDDDDAIAQLSLADMANVPEKETGD 300

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQ 285
                 +  +++++    +     Q
Sbjct: 301 EIAVYFAQGTIVQNAAAGLFSQSAQ 325


>gi|302782103|ref|XP_002972825.1| hypothetical protein SELMODRAFT_173134 [Selaginella moellendorffii]
 gi|300159426|gb|EFJ26046.1| hypothetical protein SELMODRAFT_173134 [Selaginella moellendorffii]
          Length = 559

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 113/270 (41%), Gaps = 15/270 (5%)

Query: 27  WSSHVEDNSPHVARIAIRGQI------------EDSQELIERIERISRDDSATALIVSLS 74
           W+  +      +A +   G I              S   IE+I ++    +  A+++ + 
Sbjct: 254 WTLGLSGGKADIAVLRAVGNISRQKQMGFTGSGISSDTFIEQIRQVREAKNFKAVVLRID 313

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGG A A + ++R ++ +  +KPVI  + ++AAS GY ++ A+ +IVA   +L GSIGV
Sbjct: 314 SPGGDALASDLMWRELRLLAAKKPVIASMVDVAASGGYYMAMAAGVIVAERLTLTGSIGV 373

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +     +    +++G + + +         +      P+  +       ++Y  F    +
Sbjct: 374 VTGKLNLGKLYERVGFTKEVISRGKFAELDAEQRPFRPEEAEFFGKSAKTAYKRFRDTAA 433

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN- 253
            SR++  +K   ++ GR+WTG  A   GL+D +GG  +               K+K    
Sbjct: 434 LSRSMQIEKMEEVAQGRVWTGKAAAARGLVDTLGGFSKAVAIAKQKAGISLESKVKLVEL 493

Query: 254 --PPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
                N        L +  LL   +  +  
Sbjct: 494 SRSKPNIVSFLRGGLQVLVLLPRLLDELNA 523



 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 96/282 (34%), Gaps = 18/282 (6%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVS 72
                         + ++ I G+I +             ++ + + + + D    A+IV 
Sbjct: 1   MLIAWPWQRVKKGSILKMKISGEITEQLQDKFQPGMSLPQICQNLIKAAHDPRIAAVIVQ 60

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           +          + I R I+  K     +     +     Y ++C+   + A   + +  +
Sbjct: 61  VEPLSCGWPKVDEICRHIEYYKQSGKPLVGYLAVGGEKEYYLACSCGDVFAPPGAYISLL 120

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFV 190
           G+  Q  +V   L+K+GV  +  +    K+        +++    +M+  ++D  Y  ++
Sbjct: 121 GLKVQAQFVGGVLEKIGVQPQIERIGKYKSVGDLLSRKDMSDANREMLTAILDDVYENWL 180

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG---VDQSIR 247
            LV+        +   L +  I+   +  + G I  V  +++V + +        D    
Sbjct: 181 DLVNIFAGKTTAEVENLLEEGIFEIEKLHQQGWISDVKYEDQVIEEMLKAKLQIKDDKSP 240

Query: 248 KIKDWNP--PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           K  D+        W   L        +   +  + + K  G 
Sbjct: 241 KYVDYRKYSRVREWTLGLSGGKADIAVLRAVGNISRQKQMGF 282


>gi|298370239|ref|ZP_06981555.1| signal peptide peptidase SppA, 36K type [Neisseria sp. oral taxon
           014 str. F0314]
 gi|298281699|gb|EFI23188.1| signal peptide peptidase SppA, 36K type [Neisseria sp. oral taxon
           014 str. F0314]
          Length = 328

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 70/275 (25%), Positives = 120/275 (43%), Gaps = 14/275 (5%)

Query: 13  VMLSLVTLTVVYFSWSSHVE---DNSPHVARIAIRGQIEDSQ------ELIERIERISRD 63
           V+L L+ +T +  +     +    +  H A I +RG I DS+       L E +E   ++
Sbjct: 51  VVLFLILITDIGNNSEGGKKIVSASGAHTAVINLRGAIGDSEFDDQVKALRESMEAAYKN 110

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCASNI 120
            +A A+I+  +SPGGS       F  I+++       PV     EM AS  Y I+ A++ 
Sbjct: 111 KNAKAIIIRANSPGGSPVISNIAFNEIRRLKEAHKNIPVYVVAEEMCASGCYYIAAAADK 170

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           I A  +S+VGSIGV+         +DK+GV  +   +   K    PFS   P+  ++   
Sbjct: 171 IYADPSSVVGSIGVIGGGFDATGLMDKIGVKRRLKTAGSNKGMGDPFSPETPEQTKIWNA 230

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           ++   +  F++ V   R     +     +  GRI+TG EAK+ GLID  G    V + + 
Sbjct: 231 MLADIHGEFIKAVKLGRGSRLKEKENPDIFSGRIYTGIEAKQAGLIDDFGNIYSVARDVV 290

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273
                 +     D++   +        + +   + 
Sbjct: 291 KAPELVNYSPDDDFSKLLSRRLGMEMKMRLKEAMS 325


>gi|302383896|ref|YP_003819719.1| signal peptide peptidase SppA, 67K type [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194524|gb|ADL02096.1| signal peptide peptidase SppA, 67K type [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 591

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 101/241 (41%), Gaps = 4/241 (1%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI-FRAIQKVKNRKPVITEVHEMAA 108
           S +  E I     D S  A++  +SSPGGS  A E I           KPV+  + + AA
Sbjct: 324 SDDTAEAIYDAIEDKSVKAIVFRVSSPGGSPEASEQILAAVRAAKAAGKPVVVSMGDYAA 383

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-PMKAEPSPF 167
           S GY IS  +N IVA  ++L GSIGV      V   L + GV ++ +          +P 
Sbjct: 384 SGGYWISSEANWIVAQPSTLTGSIGVFGGKFVVSEALGRFGVDLRGLSIGGDYADAFAPS 443

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
                         +D +Y  FV+ VS  R +P  +   ++ GR+WTGA+ K +GL+D +
Sbjct: 444 QSFTTTQRAAFSASMDRTYEEFVQRVSTGRRLPIARVREIARGRVWTGAQGKTLGLVDQL 503

Query: 228 GGQEEVWQSLYALGVDQSIRKI--KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           GG  E       L    +   +  K +  P++ W        + S     +  +      
Sbjct: 504 GGLTEAIGKARELANIPADTSVRFKRFPTPQSPWEALSAAFGVQSEAAQALVTLGGVMSD 563

Query: 286 G 286
            
Sbjct: 564 P 564



 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 77/225 (34%), Gaps = 8/225 (3%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA- 110
           ++++ + +  +D     L++ L   G S  + + I +A+++ +     +    +      
Sbjct: 74  QIVDTLAQAEKDSHVKVLLIRLPEAGISPASADEIRQAVRRFRASGKPVIAHSQGFQPVG 133

Query: 111 ----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EP 164
                Y++  +++ +    T+   + G      ++    D+ GV  +  +    K     
Sbjct: 134 TVISSYMVGASASELWMQNTASFQATGFSADSIFLGRAFDRYGVRAEFEQRYEYKNAVNE 193

Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLI 224
              S+      + M   + S Y   +   +  R +         +   ++  +A  + LI
Sbjct: 194 YTQSDYTGPHREAMTAWMTSIYDSAIANAAFDRKVTAAALKTTIEAGPYSAPQALSLKLI 253

Query: 225 DVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFCDLKNLSI 268
           D +G  EE          +   I +  D+   K       ++   
Sbjct: 254 DKIGQVEEAEAEAKRRAGNGADILEFGDYASSKGERQGSGRDAIA 298


>gi|220924243|ref|YP_002499545.1| peptidase S49 [Methylobacterium nodulans ORS 2060]
 gi|219948850|gb|ACL59242.1| peptidase S49 [Methylobacterium nodulans ORS 2060]
          Length = 287

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 11/278 (3%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSAT 67
               + +     + +  + P V  + + G I     L            +ER        
Sbjct: 3   FAFWSALRALLPASLRRDRPVVPVVRLSGPIGAVSPLRQGLSLGACAPALERAFGLPDIK 62

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
           A+ + ++SPGGSA     I R I+ +  + + PV+  V ++AAS GY+I+CA++ I+A  
Sbjct: 63  AVAIVVNSPGGSAAQSHLIHRRIRVLAAEAKVPVLAFVEDVAASGGYMIACAADEIIADP 122

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
           +SLVGSIGV+      +  L++LGV  +   + P KA   PF   +P  V  ++ +    
Sbjct: 123 SSLVGSIGVVSAGFGFQGLLERLGVERRVHTTGPSKAMLDPFRPEDPADVARLKGIQADI 182

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
              F  LV   R         L  G +W+G +   +GL+D +G    V +  Y   V   
Sbjct: 183 QAMFTELVRSRRPRLSGDPDELFSGAVWSGRQGLALGLVDALGDVRTVLRERYGETVQIR 242

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
           + +                     +  E  + L+++  
Sbjct: 243 LVEQVRGGLLGRLLRRREPGTEALAAFEGALALLEERA 280


>gi|6690270|gb|AAF24059.1|AF114385_1 putative protease SppA [Arabidopsis thaliana]
          Length = 680

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 67/264 (25%), Positives = 116/264 (43%), Gaps = 16/264 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSL 73
           W+  +      +A I   G I               +++LIE+I  +       A I+ +
Sbjct: 368 WTLGLTGGRDQIAIIRAGGSISRVKGPLSTPGSAIIAEQLIEKIRSVRESKKYKAAIIRI 427

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
            SPGG A A + ++R I+ +   KPVI  + ++AAS GY ++ A+N IVA   +L GSIG
Sbjct: 428 DSPGGDALASDLMWREIKLLAETKPVIASMSDVAASGGYYMAMAANAIVAENLTLTGSIG 487

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-SEVNPKAVQMMQDVVDSSYHWFVRL 192
           V+     +    +K+G + +++               + P+  ++ +     +Y  F   
Sbjct: 488 VVTARFTLAKLYEKIGFNKETISRGKYAELLGAEERPLKPEEAELFEKSAQHAYQLFRDK 547

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--K 250
            + SR++P DK   ++ GR+WTG +A   GLID VGG                 +K+   
Sbjct: 548 AALSRSMPVDKMEEVAQGRVWTGKDAHSRGLIDAVGGLSRAIAIAKQKANIPLNKKVTLV 607

Query: 251 DWNPPKNYWFCDLKNLSISSLLED 274
           + + P       L  +  S +  D
Sbjct: 608 ELSRPSTSLPDILSGIGSSVIGVD 631



 Score = 83.1 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 85/256 (33%), Gaps = 16/256 (6%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDS 65
           +  +                 V  + +RGQI D             +L E   + + D  
Sbjct: 106 IFVVKFRMLFAYPWQRVRKGSVLTMTLRGQISDQLKSRFNSGLSLPQLSENFVKAAYDPR 165

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
              + + +          E I R I   K     I     +     Y + CA N + A  
Sbjct: 166 IAGVYLHIDPLSCGWGKVEEIRRHILNFKKSGKFIVGYISICGLKEYYLGCACNELFAPP 225

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVD 183
           ++     G+  Q  ++    +K+G+  +  +    K+  +      ++ +  +M+  ++D
Sbjct: 226 SAYSFLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLSRKSISEENYEMLSVLLD 285

Query: 184 SSYHWFVRLVS---ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           + Y     +VS          +      +  ++   + K+ GLI  +   +EV   L   
Sbjct: 286 NIYSIGWMVVSDAQNYAGKKREDVENFINQGVYEIEKLKEAGLIKDIRYDDEVITMLKER 345

Query: 241 GVDQSIRKIKDWNPPK 256
              +  +K+   +  K
Sbjct: 346 LGVEKDKKLPTVDYKK 361


>gi|319760105|ref|YP_004124044.1| peptidase S49 [Alicycliphilus denitrificans BC]
 gi|317119711|gb|ADV02199.1| peptidase S49 [Alicycliphilus denitrificans BC]
          Length = 315

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 125/289 (43%), Gaps = 18/289 (6%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS------QELIERIER 59
           +  +    +++   L  V+ +       +  HV  I I G I           + + + +
Sbjct: 32  RAKRALVAVMAAWGLAGVWLASDLGPGKSKAHVPVIRIEGGIAGDSTKINADSVNKLLAK 91

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCA 117
              DDSA+A+++ + SPGGS    + I   I + K    KP+ +    M ASAGY+I+  
Sbjct: 92  AFDDDSASAVVLYIDSPGGSPAEADRIGSFIARKKQETGKPLYSVCANMCASAGYMIAMH 151

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
            + I A++ SL+GSIG +         + K+GV   +  S  +KA  +P++ V    V+ 
Sbjct: 152 GDEIYASKYSLIGSIGAILSSWNFSQAIGKVGVQHNAYASGKLKAMLNPYAPVKAGDVEK 211

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
            Q++VD     F   V   R       + L  G +W+G EAK  GL+DV+G  ++V    
Sbjct: 212 AQELVDGMGKVFAEQVRFYRKGKLTSKVDLFTGEVWSGEEAKTYGLVDVIGTLDDVVHD- 270

Query: 238 YALGVDQSIRKIKDWNPPKNYWF-----CDLKNLSISSLLEDTIPLMKQ 281
                     +I D +     +          +  I S +   +PLM Q
Sbjct: 271 ----KFPDGSQILDMDKSGGGFRLLRSASQAISQGIQSGMLAHVPLMMQ 315


>gi|242398488|ref|YP_002993912.1| Putative protease [Thermococcus sibiricus MM 739]
 gi|242264881|gb|ACS89563.1| Putative protease [Thermococcus sibiricus MM 739]
          Length = 335

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 60/241 (24%), Positives = 125/241 (51%), Gaps = 3/241 (1%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           ++  E  +  +A + + G I+++   ++I +I  I  DD+   +++ + SPGG       
Sbjct: 83  TNRTEKANVTIAILPVVGPIDETAAFDVISKIREIRNDDNIGGVVLWIESPGGYVGPVIT 142

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I++ ++K+   KP++     MAAS GYLI+CA++ I+A   + VGSIGVL+ +  ++   
Sbjct: 143 IYKELKKLSYEKPIVAYTGGMAASGGYLIACAADKIIADPLAEVGSIGVLYVHYDLEQNY 202

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            + GV +   K+   K   + + ++  +  +M+++ V++ + +F+++V E RN+  + T 
Sbjct: 203 AQNGVKVNVFKTGKYKDTGAEWRDLTEEEREMIKNEVNTYFEYFLQVVGEGRNLDLNTTR 262

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
              DGR+W  +E  K  L+D  G  +    +L  +   +S   +       ++      +
Sbjct: 263 KYGDGRVWFASE-VKGTLVDDTGDLDFTISALEEILNVKSANVVLYSTQKVDFGIYQSSS 321

Query: 266 L 266
           L
Sbjct: 322 L 322


>gi|212697414|ref|ZP_03305542.1| hypothetical protein ANHYDRO_01984 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675606|gb|EEB35213.1| hypothetical protein ANHYDRO_01984 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 333

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 71/253 (28%), Positives = 132/253 (52%), Gaps = 7/253 (2%)

Query: 30  HVEDNSPHVARIAIRGQIEDS---QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
              D+   +A ++  G I D     + +++++ +  DDS   LI+ ++SPGG+ Y  E I
Sbjct: 61  EKGDSKNKIAVLSYEGAIGDGQVYDDFMDQLDDVYDDDSVKGLIMQVNSPGGAVYNSEQI 120

Query: 87  FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
              I+K++  K  PV T +  MAAS GY IS  ++ I A+  +L GSIGV+      +  
Sbjct: 121 ANKIKKIQKDKKIPVFTVMKTMAASGGYYISAPTDRIYASNETLTGSIGVIMSSTSFQGL 180

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
            +K G+  +++ +  MK   S   ++  +  +  QD+++SS+  FV++VS+ R++  D+ 
Sbjct: 181 FEKYGIKQQNITTGKMKDAGSVGKDMTDEQKKYFQDLINSSFDRFVKIVSQGRSMKEDEV 240

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA--LGVDQSIRKIKDWNPPKNYWFCD 262
             L+DGR++ GA+AK  GL+D +G  +   + +       +  + +  D     + +F  
Sbjct: 241 RKLADGRVYDGAQAKNNGLVDKIGDLDLAIEDMKKDFKLNNPEVYQYDDDMASFSRFFSK 300

Query: 263 LKNLSISSLLEDT 275
            +NL   +   D 
Sbjct: 301 AENLLNKNSSSDL 313


>gi|38638590|ref|NP_943176.1| peptidase [Pseudomonas sp. ND6]
 gi|34335378|gb|AAP44276.1| probable peptidase [Pseudomonas sp. ND6]
          Length = 258

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 16/255 (6%)

Query: 38  VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---K 94
           VAR+   G+   ++ L   + +    ++  A+I+ ++SPGGS      ++  ++++    
Sbjct: 12  VARLG-DGEEASAENLKRSLGKAFESENTKAVILEINSPGGSPVQAGHVYDEVRRLRALH 70

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
               V   + ++ AS GY I+ A++ I A + SLVGSIGV          + KLGV  +S
Sbjct: 71  PDTKVYAVITDLGASGGYYIASAADEIFADKASLVGSIGVTAASFGYVELMQKLGVERRS 130

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRI 212
             S   KA    F   N +  +  + V+ ++++ F+R V   R       +   L  G I
Sbjct: 131 YTSGEHKAFLDQFQPQNQEETKFWEGVLKTTHNQFIRSVEAGRGERLKAKENPDLYSGLI 190

Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
           WTG +A  +GL+D +G  + V + +        + KI D+   +N        +  S   
Sbjct: 191 WTGEQAVGLGLVDRLGDSDYVAREVVG------VSKIVDFTRKQNPLDRFASKIGASV-- 242

Query: 273 EDTIPLMKQTKVQGL 287
                L  +    GL
Sbjct: 243 --AEHLSLRLGFDGL 255


>gi|254471707|ref|ZP_05085108.1| serine protease [Pseudovibrio sp. JE062]
 gi|211958909|gb|EEA94108.1| serine protease [Pseudovibrio sp. JE062]
          Length = 286

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 112/262 (42%), Gaps = 18/262 (6%)

Query: 43  IRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
           + G I          +   + + +E       A A+ +S++SPGGS      IF+ I+++
Sbjct: 25  MSGAIGAASPLKSGLNLSSVEDALETAFSFKEAPAVALSINSPGGSPVQSHLIFKRIRQL 84

Query: 94  --KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
             +N K V+  V ++AAS GY+I+ A + I+    S++GSIGV+         L+K GV 
Sbjct: 85  ADENNKQVLVFVEDVAASGGYMIALAGDDIIVDPASIIGSIGVVSAGFGFTELLEKAGVQ 144

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
            +   S   K    PF+    + ++ ++ +    +  F+ +V   R         L  G 
Sbjct: 145 RRVYTSGEKKVTLDPFAPEVKEDIEHLKTLQHEIHEMFIDMVKSRRGDVLSDDDNLFSGL 204

Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
            WTGA+A+ +GL+D +G         Y         K+K     K +    +   S+   
Sbjct: 205 FWTGAKARDLGLVDGLGDLHSTIHERYG-----KETKVKVVGTKKRFLGRFIPGASLKGG 259

Query: 272 LEDTIPLMKQTKVQGL--WAVW 291
           L +    +    +  L   ++W
Sbjct: 260 LNEAAGTLPAAALATLEEKSLW 281


>gi|189502064|ref|YP_001957781.1| hypothetical protein Aasi_0656 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497505|gb|ACE06052.1| hypothetical protein Aasi_0656 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 513

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 59/213 (27%), Positives = 109/213 (51%), Gaps = 10/213 (4%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGS 79
            H + ++  +A +   G I D +           +  + ++  D    A+++ ++SPGGS
Sbjct: 298 PHTKQHNNRIAVLIASGAIVDKEIGPNYITTSIFVRMLRKLREDPDVKAIVLRINSPGGS 357

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           A A + I++ +   +  KP++  + ++AAS GY ++   + I+A  T++ GSIG+   Y 
Sbjct: 358 ALASDTIWKELMLTRACKPIVASMSDIAASGGYYLAAGCDYILAHPTTITGSIGIYGLYF 417

Query: 140 YVKPFLDK-LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
            V   L   LG+    VK+SP     SP    +     ++Q  ++S Y  F+  V+  R 
Sbjct: 418 DVHALLKNKLGIVGDVVKTSPSADIFSPVRPFSEHEKNIIQQHIESGYDNFLDKVATGRQ 477

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
           +       L++GR+W+G+ AK+ GL+D +GG E
Sbjct: 478 MKKVDVARLAEGRVWSGSLAKEHGLVDQLGGLE 510



 Score = 72.7 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 89/269 (33%), Gaps = 22/269 (8%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRG----QI-------------- 47
           + I    ++  ++ +       +         V RI + G    +I              
Sbjct: 19  RFITIALIISLIIGIQKHTLKSTVPSRLTDKTVLRIVLHGRLVEEIHQPLLQVLTKEESH 78

Query: 48  -EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
             D   +   I     D     + + +            +  A+Q  K     I    E 
Sbjct: 79  EIDILTIKNAIRSAQEDRYIAGIYLEVGELVAGWATLAELRGALQAFKATGKFIVAYGEN 138

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
             S  Y ++  ++ IV          G+     + K  LDKL ++ +  +    K+   P
Sbjct: 139 YNSKSYYLASLADEIVLHPAGNFIFTGLKLTVLFYKQLLDKLDIAPQIFRVGRYKSAVEP 198

Query: 167 FSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GAEAKKVGL 223
           F +  ++  + +  + ++++ Y   ++ V+  +N+       +++    T   EA K GL
Sbjct: 199 FMQCSMSEASKEQNRVLLNNIYDHLIQTVAIHKNLDPSVLKSMANTLAITQPQEAYKAGL 258

Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           +  VG   ++   + A        KI   
Sbjct: 259 VTQVGYFNDIEALIRAKLKLAVATKINYI 287


>gi|269127810|ref|YP_003301180.1| signal peptide peptidase SppA, 67K type [Thermomonospora curvata
           DSM 43183]
 gi|268312768|gb|ACY99142.1| signal peptide peptidase SppA, 67K type [Thermomonospora curvata
           DSM 43183]
          Length = 570

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 116/247 (46%), Gaps = 6/247 (2%)

Query: 44  RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI-QKVKNRKPVITE 102
           +G    S  +        RD+   A++  ++SPGGSA A +AI+R +    +  KPVI  
Sbjct: 306 QGPAMGSDTIGAAFRAAVRDERIKAIVFRVNSPGGSAVASDAIWREVVLARRAGKPVIVS 365

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
           + ++AAS GY ++ A+++IVA   ++ GSIGV+     +   L+++GV + SV       
Sbjct: 366 MGDVAASGGYYVAMAADVIVAQPGTITGSIGVVTGKAVLSGLLERIGVGMGSVTDGEHAL 425

Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVG 222
             S   + +P   + +   +D  Y  F   V+E R +   +   L+ GR+WTGA+AK+ G
Sbjct: 426 MYSAIKDFSPSEWERINASLDHIYENFTAKVAEGRGLSRRRVEELARGRVWTGADAKEHG 485

Query: 223 LIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282
           L+D +GG E   +         +   ++ +          L+ L  +   ED      + 
Sbjct: 486 LVDELGGLELALELARKKAGLPADAPVRTF-----PHLGPLERLRPAESSEDRAAASARF 540

Query: 283 KVQGLWA 289
              G  A
Sbjct: 541 DGWGSLA 547



 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 82/215 (38%), Gaps = 8/215 (3%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA-- 108
           +++++ + +   D    ALIV +    G     + +  A+  ++    +     E     
Sbjct: 53  RDVLDGLRKARGDARVRALIVRVGGTIG-LAMAQELRDAVTALRQAGKLTVAWSETFGEG 111

Query: 109 ---SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--E 163
              +  Y ++ A + +    T  VG  GV  + P+++  L+K G+  +       K    
Sbjct: 112 RQGNVPYYLASAFDRVYLQPTGEVGLTGVALEEPFLRGALEKAGIEPRFAARHEYKTVAN 171

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
                   P+  +  Q +VDS+       +++ R +  ++   L D      AEA + GL
Sbjct: 172 MFMERAYTPEHRESSQRLVDSAGRQLAEGIAQGRGLTVERVRELIDRGPLLAAEALEAGL 231

Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           +D +  ++EV+  +         R    +    N 
Sbjct: 232 VDRLAYRDEVYAEVREKVGGPDGRVQLRYVSRYNR 266


>gi|300871688|ref|YP_003786561.1| periplasmic serine proteases ClpP class [Brachyspira pilosicoli
           95/1000]
 gi|300689389|gb|ADK32060.1| periplasmic serine proteases ClpP class [Brachyspira pilosicoli
           95/1000]
          Length = 277

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 108/219 (49%), Gaps = 3/219 (1%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAA 108
           ++LI+  E   +DD+  A+++ + SPGG+  + E   + +Q++K +  KP++     MAA
Sbjct: 23  EKLIDDFEYYMKDDNVKAIVLQVDSPGGALTSCEEALKYLQELKKKYPKPIVASFRSMAA 82

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
           S GY IS  ++ I A E++L GSIGV+ Q+  V   +DK G+ + ++KS   K   SPF 
Sbjct: 83  SGGYYISMIADKIYANESTLTGSIGVISQFVNVSSLMDKYGIKMYTIKSGRNKDSLSPFR 142

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVV 227
           E     +   QD+       F  +V  +R          L DGR+++G  A +VGLID +
Sbjct: 143 EPREDELAYWQDMTYEFVAQFTNVVETARGDKIKGNREDLFDGRVFSGKRALEVGLIDNI 202

Query: 228 GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           G  ++  +    +   +         P    +   + + 
Sbjct: 203 GTLKDAIKDAAEMAEIKDEEPYIIKRPENKNFINLILSS 241


>gi|284164633|ref|YP_003402912.1| signal peptide peptidase SppA, 36K type [Haloterrigena turkmenica
           DSM 5511]
 gi|284014288|gb|ADB60239.1| signal peptide peptidase SppA, 36K type [Haloterrigena turkmenica
           DSM 5511]
          Length = 331

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 114/234 (48%), Gaps = 19/234 (8%)

Query: 38  VARIAIRGQIE---------------DSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
           VA +A+ G I                 + +++++I+R   DDS  AL+V L++PGG    
Sbjct: 68  VAEVAVEGPITRDGGGGSLPSSPRGTPADDIVDQIDRADEDDSVDALLVKLNTPGGEVVP 127

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            + I  A ++     P I    ++ AS GY I+   + + A E S+VGSIGV+       
Sbjct: 128 SDDIRLAAERF--DGPTIAYATDVCASGGYWIASGCDELWAREGSIVGSIGVIGSRVNAS 185

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
              +K+G+S +   +   K   +P  E++      +Q ++D  Y  FV  VS+ R++  +
Sbjct: 186 DLAEKVGLSYERFAAGDYKDAGTPLKEMDEDERAYLQGLIDDYYDTFVERVSDGRDLDSE 245

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
                ++ RI+ G +A+++ L+D +G + E+   L     ++    ++++ P +
Sbjct: 246 FVRD-TEARIYLGEQARELELVDRLGTRREIEDELADRL-ERDEISVEEFEPER 297


>gi|326386909|ref|ZP_08208523.1| signal peptide peptidase SppA, 67K type [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208589|gb|EGD59392.1| signal peptide peptidase SppA, 67K type [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 650

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 106/234 (45%), Gaps = 10/234 (4%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVS 72
           +  +      +     +A + + G I D            +   I+R +       +++ 
Sbjct: 297 LGAYLADLPAQKGGKAIAVVNVEGAIVDGNAGPGVAGGDRIAALIDRATASGDYAGMVLR 356

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVI-TEVHEMAASAGYLISCASNIIVAAETSLVGS 131
           + SPGGS    E I  A+++ K     +   +  +AAS GY +S  ++ I A   ++ GS
Sbjct: 357 VDSPGGSVTGAERIRAAVERFKASGLPVAVSMGNLAASGGYWVSTPADRIFAEPATITGS 416

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IG+    P  +  L K GV+   ++++P+  +PS     +P+   ++Q  +D+ YH FV 
Sbjct: 417 IGIFAVIPSFEDSLAKFGVTTDGLRTTPLSGQPSILGGFSPEMEAVLQTEIDAGYHRFVG 476

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           LVS SR+  Y     ++ GR+W G  A+++GL+D  G  +     +        
Sbjct: 477 LVSASRHKSYADVDRIAQGRVWDGGTARQIGLVDEFGNLDNALNWVAGKAGATK 530



 Score = 63.5 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 73/216 (33%), Gaps = 9/216 (4%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
           + +L+  IE  + D    A+ + L   GG        +  A+ KV+     +     +  
Sbjct: 81  AHDLVRAIEAAATDTRIRAVTLDLEGFGGAGQVTLSRLGEALDKVRGAGKPVLVRAVLYD 140

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167
                ++  ++ I       V   G      +    LD+L V     K    K+   P+ 
Sbjct: 141 DDALQLAAHASEIWVDPLGGVMVRGPGGTLLFYHGLLDRLKVKAHVFKVGTYKSAVEPYI 200

Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV----- 221
              ++P+A +    V  + +H ++  V ++R       +     +    ++         
Sbjct: 201 RDSLSPEAREAETAVYTAVWHDWLAEVKKARPRANLALVTSDPVKWLAASDGNAAEAAKA 260

Query: 222 -GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
            GL+D +G +    +    +      + +  +   +
Sbjct: 261 AGLVDRIGDKVAFGKRAAEIVGGDRDQGLGGYKATR 296


>gi|237750827|ref|ZP_04581307.1| signal peptide protease IV [Helicobacter bilis ATCC 43879]
 gi|229373272|gb|EEO23663.1| signal peptide protease IV [Helicobacter bilis ATCC 43879]
          Length = 294

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 120/255 (47%), Gaps = 3/255 (1%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVE-DNSPHVARIAIRGQIEDSQELIERIERISR 62
           +   I T + ++ L+ + +   + +S  E ++ P++A++ +   I +S+    +IE I +
Sbjct: 14  IFDFINTYFKVVVLLLIVLFLATLASDEEIESKPNLAKLYLNFPIYESESFAAQIEAIKK 73

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           +D    +++ + SPGG+  A   I   I+++  + PV+     + AS  Y     ++ I 
Sbjct: 74  NDDIKGVLLLIDSPGGAVGASIEIADMIKELNEKIPVVAYTQSLMASGSYYAGMYAHSIY 133

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A   +L+GSIGV+F  P  +  +DK+G+ ++ V +   K   S   +      + + ++ 
Sbjct: 134 ANRGALIGSIGVIFSAPNFEEAMDKIGIKMQGVSAGEYKEIGSITRKWKNTEKEFINNLT 193

Query: 183 DSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
              Y  F   V  +R            ++G+I++ + A K+GLID V    +V + L  L
Sbjct: 194 QEQYKMFYTDVIAARGERLKTKNHLDFAEGKIFSASNALKLGLIDGVNSMSKVEKILQNL 253

Query: 241 GVDQSIRKIKDWNPP 255
              + I  +K     
Sbjct: 254 SGVEEIVWLKKDKME 268


>gi|32490856|ref|NP_871110.1| protease 4 [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
 gi|25166062|dbj|BAC24253.1| sppA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 615

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 65/257 (25%), Positives = 118/257 (45%), Gaps = 12/257 (4%)

Query: 33  DNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAG 83
            N   +A I   G I +  +         +  +I++   D +  +L+V ++SPGGS  A 
Sbjct: 321 SNKGEIAVIFANGVIINGPDKPGFSSGDFIAYQIKQARLDPNIKSLVVRINSPGGSVNAS 380

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I   +   KN  KPV+  +  +AAS GY IS  +N I++   +L GSIG+      ++
Sbjct: 381 EIIRSELDATKNMGKPVVVSMGGIAASGGYWISTPANYIISNPDTLTGSIGIFGIINTIE 440

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+ +G+    V +SP+          +    +M   + +  Y+ F+ LVS+SRN    
Sbjct: 441 STLESIGIYSDGVSTSPLANINIAKKLPSEFLEKMKLIIENGYYN-FLSLVSKSRNKTIK 499

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           +   +  G +W G +A K GL+D +G  ++       L        IK  +P  +     
Sbjct: 500 EVDKIGQGHVWIGTDALKKGLVDKLGDFDDAIIKAAELSNLSD-YDIKWNDPEPSIIDFI 558

Query: 263 LKNLSISSLLEDTIPLM 279
            KN ++ ++++  +  +
Sbjct: 559 YKNTNLINIIKLYLNYI 575



 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 119/310 (38%), Gaps = 42/310 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + F  + +    ++L +  + ++YF  ++ + +N      I I G I D           
Sbjct: 19  LNFTRRLVLNLLLILIIFCILILYFQTNNPINENKKGALFIDIIGIIVDKPSSSSKFKQL 78

Query: 52  ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92
                             +++  I +   D++ T L++ L    GS     + I +A+++
Sbjct: 79  SRELIGSSSNKLQENSLFDIVYAIRKAKDDNNITGLVLYLKDFAGSDQTSLQYIGKALKE 138

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            K     I  + +  + A Y ++  SNII      +V   G+     Y K FL KL ++ 
Sbjct: 139 FKKTGKPIYSIGDNYSQAQYFLASYSNIIYLNPQGMVDLHGISTNNFYYKTFLKKLKINT 198

Query: 153 KSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT------ 204
              +    K+   P     ++ +A +  +  +   +  ++ ++S +RNI  ++       
Sbjct: 199 HVFRVGNYKSAVEPVLRDNMSDEAKEDDKRWIQKLWRSYLNVISINRNIKIEEIFPNVKE 258

Query: 205 --LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL----GVDQSIRKIKDWNPPKNY 258
               L   +  T   A K  L+D +    E+ + +  +      ++S  KI  +N     
Sbjct: 259 ILEKLKIVKGNTAEFALKNNLVDKIESNPEIEKEMIKIFGWNKNEKSFNKISIYNYQDKL 318

Query: 259 WFCDLKNLSI 268
            F +   +++
Sbjct: 319 KFSNKGEIAV 328


>gi|254302877|ref|ZP_04970235.1| possible S49 family peptidase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323069|gb|EDK88319.1| possible S49 family peptidase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 589

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 68/271 (25%), Positives = 116/271 (42%), Gaps = 23/271 (8%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLS 74
              ++D++  +  I + G I +SQ             E +E++      D   A+++ ++
Sbjct: 306 EGSMDDSNNIIYVIPLEGDIVESQTEVFAGEENINVSETLEKLNIAKESDKVKAVVLRVN 365

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGGSA   + I   ++++   KPV   +  +AAS GY IS  +N I     ++ GSIGV
Sbjct: 366 SPGGSALTSDIIAEKVKELAEEKPVYVSMSSVAASGGYYISANANKIFVDRNTITGSIGV 425

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +   P     +   GV+I+ +         S  S    K    + +     Y  F+ +VS
Sbjct: 426 VSILPDFSKLITDNGVNIEKISEGEYSDLYSSDS-FTEKKYNKIYNSNLKVYEDFLNVVS 484

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK---- 250
           + R I  +K   +++GRIWTG EA K+GL D +GG      +L           +     
Sbjct: 485 KGRKIDKEKLKTIAEGRIWTGDEAIKIGLADEIGGLNATIYALAEDNDMDEYAIVIAKDK 544

Query: 251 -----DWNPPKNYWFCDLKNLSISSLLEDTI 276
                 +     Y   D K+L    + +D +
Sbjct: 545 FELGNIYKKYSRYIKMDTKDLIKEKIFKDYL 575



 Score = 62.7 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 100/281 (35%), Gaps = 32/281 (11%)

Query: 3   FVLKKI-------KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARI----------AIRG 45
           FV+K+I            ++ ++   V+                 +           ++ 
Sbjct: 24  FVIKEIFSFFIKLFLFLFIVGIIISAVIKSFEEKPTVAIKNKAYVLINLGDSYNERLLKS 83

Query: 46  QIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPV 99
            + +   +     ++ IE IS DD    +I+ L+    S    E + + +   +   K +
Sbjct: 84  NLFEDDSINFYTLLQSIETISYDDRVEGIILKLNGDSLSYAQSEELAQELSMARAANKKI 143

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF-QYPYVKPFLDKLGVSIKSVKSS 158
           I     +     YL S A+ I + +  S   +I   F +  Y+K   DK GV    +   
Sbjct: 144 IAYFENVGRKNYYLASYANEIYMPSANSTSVNIYPYFREEFYIKKLADKFGVKFNIIHVG 203

Query: 159 PMKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216
             K+       S ++ +A +    V+D +Y+ F+ +VS +R I  D    +        A
Sbjct: 204 DYKSYMENLANSTMSKEAKEDTVRVLDKNYNNFLDVVSLNRKISRDDLDKIIKDGELVAA 263

Query: 217 ---EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
              +     LID     + V   +   G    I  I+++  
Sbjct: 264 SSIDLMNNNLIDKYAYWDNVISMV---GGKDKIITIQEYAK 301


>gi|253582352|ref|ZP_04859575.1| protease IV [Fusobacterium varium ATCC 27725]
 gi|251835891|gb|EES64429.1| protease IV [Fusobacterium varium ATCC 27725]
          Length = 584

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 101/239 (42%), Gaps = 12/239 (5%)

Query: 30  HVEDNSPHVARIAIRGQI-EDSQE-----------LIERIERISRDDSATALIVSLSSPG 77
                   +A I   G I  DS             +IE I +  +DD+   +++ ++SPG
Sbjct: 305 TENKKKDKIAVIYAEGTIFMDSTSGGISGNVTPNVMIEEINKALKDDTVKGIVLRINSPG 364

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           GSA A   I   I +    KP+   +  + AS GY I+  +  I A + SL GSIGV+  
Sbjct: 365 GSALAANIISNKIVEANGIKPIYVSIGGVGASGGYYIASVTEKIYADKDSLTGSIGVVSI 424

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
            P +K  L  + +++  VK        S   + +      +       Y+ F+  VS  R
Sbjct: 425 IPNIKKMLGNVSINVDEVKKGEYSDIYSMVKDFDKDKRDKLYASNLKVYNEFLDTVSFGR 484

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
            +       ++ G++W G EA ++GL+D +GG E   + L           ++  N P 
Sbjct: 485 KLNRQHVERIAQGKVWLGEEALELGLVDEIGGLENAIKGLAGDLKLIDYEIVEIMNAPN 543



 Score = 73.9 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 97/269 (36%), Gaps = 30/269 (11%)

Query: 3   FVLKKIKTRYV-MLSLVTLTVVYFSWSSHVEDNSPHVAR-------IAIR---------- 44
           FV+K+I + ++     + +     ++ +        V         I +           
Sbjct: 17  FVIKEIFSFFIKAFLFLVVIFSIGAFFAKTALEKDKVTIEKGSYVEIDLSKEYKEKGKNL 76

Query: 45  -----GQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV 99
                GQ  +   ++   + I RD +   +++ L +    +   E + + I  +K  K  
Sbjct: 77  PEFLKGQDTNFFSMLRAFDSIERDGNIKGVVLKLDNLSLDSAQIEEVGKKIDNLKKSKKE 136

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSL--VGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
           +     M  +  Y ++  SN I    T    V   G   +  Y K   D+LG+    +  
Sbjct: 137 VYSYMTMVNNRNYSLAIKSNQIFMPPTMSAPVNITGYYGELMYYKLLADRLGIEFNVIHV 196

Query: 158 SPMKAE--PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWT 214
              KA         ++ +  + ++ + +  Y+ FV  ++  R + +D     + +G +  
Sbjct: 197 GDYKAYGENLIKEHISKEYKENIERMYNRKYNNFVNNIAAERKVNHDFINEKILNGDLMV 256

Query: 215 GA--EAKKVGLIDVVGGQEEVWQSLYALG 241
               + KK+ L+D     +++ Q +    
Sbjct: 257 SEPNQMKKLNLVDEFMYYDQLKQVIGEKK 285


>gi|159043193|ref|YP_001531987.1| peptidase S49 [Dinoroseobacter shibae DFL 12]
 gi|157910953|gb|ABV92386.1| peptidase S49 [Dinoroseobacter shibae DFL 12]
          Length = 265

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 63/266 (23%), Positives = 116/266 (43%), Gaps = 22/266 (8%)

Query: 33  DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
            + P VA + ++G I        + Q +   +ER        A+ + ++SPGGS      
Sbjct: 9   KSDPTVAVVRLQGAIAATGRGMLNDQSVGPLLERAFTKGKPDAVALVINSPGGSPAQSSL 68

Query: 86  IFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           I   I+++   K  PV   V ++AAS GY I+ A++ I    TS+VGSIGV+        
Sbjct: 69  IGARIRRLAEEKEVPVYAFVEDVAASGGYWIAAAADEIWLDATSIVGSIGVISASFGFHE 128

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            +++ G+  +   +   K+   PF    P+ V+ ++ +    +  F   ++  R     +
Sbjct: 129 LMERQGIERRVYTAGKDKSLLDPFRPERPEDVERLKGLQAQLHETFKGHITARRGAKLPE 188

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              L  G +W G +   VGL D +G    V +  +         + + + P +      L
Sbjct: 189 DRDLYTGEVWIGQQGIDVGLADGIGHVAPVMKEKFG-----DKTRFRTYGPRRP-----L 238

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289
            +    S+++DT+  ++     GLWA
Sbjct: 239 ISRFGFSVVDDTLHALEAR---GLWA 261


>gi|114764456|ref|ZP_01443681.1| peptidase, family S49 [Pelagibaca bermudensis HTCC2601]
 gi|114543023|gb|EAU46042.1| peptidase, family S49 [Roseovarius sp. HTCC2601]
          Length = 265

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 106/260 (40%), Gaps = 19/260 (7%)

Query: 33  DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
              P VA + ++G I          Q L   +ER  R     A+ + ++SPGGS      
Sbjct: 9   KKKPTVAVVRLQGAIGTGGRMALSDQSLRPLLERAFRKGKPVAVALEINSPGGSPVQSSL 68

Query: 86  IFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           I   I+++      PV     ++AAS GY I+ A++ I A  +S++GSIGV+        
Sbjct: 69  IGARIRRLSQECEVPVFAFTEDVAASGGYWIASAADEIHADPSSILGSIGVISAGFGAHV 128

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL + G+  +   +   K+   PF   N + V  +  ++   +  F+  + + R      
Sbjct: 129 FLQRQGIERRVHTAGRSKSMLDPFRPENEEDVARLNRLLGQLHETFIAQIKDRRGAKLAD 188

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              L  G +W G  A +VGL D +G    V +  +         + + +   +       
Sbjct: 189 NPDLFTGEVWIGKAACEVGLADGIGHLVPVMKDKFG-----DKVRFRRYEQKRRLLPRL- 242

Query: 264 KNLSISSLLEDTIPLMKQTK 283
                ++L +D +  + +  
Sbjct: 243 ----GATLAQDALSTIDERA 258


>gi|302805296|ref|XP_002984399.1| hypothetical protein SELMODRAFT_156630 [Selaginella moellendorffii]
 gi|300147787|gb|EFJ14449.1| hypothetical protein SELMODRAFT_156630 [Selaginella moellendorffii]
          Length = 559

 Score =  115 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 108/243 (44%), Gaps = 12/243 (4%)

Query: 27  WSSHVEDNSPHVARIAIRGQI------------EDSQELIERIERISRDDSATALIVSLS 74
           W+  +      +A +   G I              S   IE+I ++    +  A+++ + 
Sbjct: 254 WTLGLSGGKADIAVLRAVGNISRQKQMGFTGSGISSDAFIEQIRQVREAKNFKAVVLRID 313

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGG A A + ++R ++ +  +KPVI  + ++AAS GY ++ A+ +IVA   +L GSIGV
Sbjct: 314 SPGGDALASDLMWRELRLLAAKKPVIASMVDVAASGGYYMAMAAGVIVAERLTLTGSIGV 373

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +     +    +++G + + +         +      P+  +       ++Y  F    +
Sbjct: 374 VTGKLNLGKLYERVGFTKEVISRGKFAELDAEQRPFRPEEAEFFGKSAKTAYKRFRDTAA 433

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
            SR++  +K   ++ GR+WTG  A   GL+D +GG  +               K+K    
Sbjct: 434 LSRSMQIEKMEEVAQGRVWTGKAAAARGLVDTLGGFSKAVAIAKQKAGISLESKVKLVEL 493

Query: 255 PKN 257
            ++
Sbjct: 494 SRS 496



 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 96/282 (34%), Gaps = 18/282 (6%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVS 72
                         + ++ I G+I +             ++ + + + + D    A+IV 
Sbjct: 1   MLIAWPWQRVKKGSILKMKISGEITEQLQDKFQPGISLPQICQNLIKAAHDPRIAAVIVQ 60

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           +          + I R I+  K     +     +     Y ++C+   + A   + +  +
Sbjct: 61  VEPLSCGWPKVDEICRHIEYYKQSGKPLVGYLAVGGEKEYYLACSCGDVFAPPGAYISLL 120

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFV 190
           G+  Q  +V   L+K+GV  +  +    K+        +++    +M+  ++D  Y  ++
Sbjct: 121 GLKVQAQFVGGVLEKIGVQPQIERIGKYKSVGDLLSRKDMSDANREMLTAILDDVYENWL 180

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG---VDQSIR 247
            LV+        +   L +  I+   +  + G I  V  +++V + +        D    
Sbjct: 181 DLVNIFAGKTTAEVENLLEEGIFEIEKLHQQGWISDVKYEDQVIEEMLKAKLQIKDDKSP 240

Query: 248 KIKDWNP--PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           K  D+        W   L        +   +  + + K  G 
Sbjct: 241 KYVDYRKYSRVREWTLGLSGGKADIAVLRAVGNISRQKQMGF 282


>gi|118602719|ref|YP_903934.1| peptidase S49 [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567658|gb|ABL02463.1| peptidase S49 [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 315

 Score =  115 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 124/297 (41%), Gaps = 21/297 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV-------EDNSPHVARIAIRGQI-----EDSQEL 53
           ++ +  + +L +     V +   S         +  SP VA + + G I      D+ E 
Sbjct: 24  RRWRIIFSLLFVGYFYFVSYIGVSGSGILETVLKKESPFVAEVVLSGTIQSSGSIDADEA 83

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAG 111
           IE +      ++A A+I+ ++SPGGS      I++AI + K    K +   + ++ AS  
Sbjct: 84  IELLHSAFESENAKAVILRINSPGGSPVQSSRIYKAIVRFKKQFDKKIYVVIEDICASGC 143

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I  A++ I A E+S++GSIGV+         + KLG+  +   +   K     FS  +
Sbjct: 144 YYIVSAADEIYADESSIIGSIGVVMSSFGAVDAIKKLGIKRRLYTAGKYKGLLDSFSPED 203

Query: 172 PKAVQMMQDVV-DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
            K +  +Q  + D S+  F+  V   R     K   L  G IW G E+ K+GLID +   
Sbjct: 204 EKTLMHIQTSILDKSHQNFINAVKAGRGNKLSKHKDLFTGLIWLGQESNKLGLIDGIADA 263

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
             + + +        I     +   K       +  +   +L     L+ Q  +  L
Sbjct: 264 NYIAKHIIG------IDSRILFEKEKTLLEQLTEASAKDIVLAINDRLISQNPIGSL 314


>gi|325846372|ref|ZP_08169341.1| signal peptide peptidase SppA, 36K type [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481556|gb|EGC84596.1| signal peptide peptidase SppA, 36K type [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 333

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/253 (27%), Positives = 132/253 (52%), Gaps = 7/253 (2%)

Query: 30  HVEDNSPHVARIAIRGQIEDS---QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
              D+   +A ++  G I D     + +++++ +  DDS   +I+ ++SPGG+ Y  E I
Sbjct: 61  EKGDSKNKIAVLSYEGAIGDGQVYDDFMDQLDDVYDDDSVKGVIMQVNSPGGAVYNSEQI 120

Query: 87  FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
              I+K++  K  PV T +  MAAS GY IS  ++ I A+  +L GSIGV+      +  
Sbjct: 121 ANKIKKIQKDKKIPVFTVMKTMAASGGYYISAPTDRIYASNETLTGSIGVIMSSTSFQGL 180

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
            +K G+  +++ +  MK   S   ++  +  +  QD+++SS+  FV++VS+ R++  D+ 
Sbjct: 181 FEKYGIKQQNITTGKMKDAGSAGKDMTDEQKKYFQDLINSSFDRFVKIVSQGRSMKEDEV 240

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA--LGVDQSIRKIKDWNPPKNYWFCD 262
             L+DGR++ GA+AK  GL+D +G  +   + +       +  + +  +     + +F  
Sbjct: 241 RKLADGRVYDGAQAKSNGLVDKIGDLDLAIEDMKKDFKLNNAEVYQYDNDMASFSRFFSK 300

Query: 263 LKNLSISSLLEDT 275
            +NL   +   D 
Sbjct: 301 AENLLNKNSSSDL 313


>gi|162456988|ref|YP_001619355.1| Signal peptide peptidase [Sorangium cellulosum 'So ce 56']
 gi|161167570|emb|CAN98875.1| Signal peptide peptidase [Sorangium cellulosum 'So ce 56']
          Length = 619

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 134/297 (45%), Gaps = 22/297 (7%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIE--------------DSQELIERIERISRDD 64
           +L  V+ S S      +PHVA +   G I                 +EL + I R++ D 
Sbjct: 287 SLVDVFRSVSGASSLGAPHVAVVPAIGGITMSAKGMPIGSSDGIGERELGKTITRLTEDQ 346

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
           SA A+++ + SPGGSA A + +++ + +++ +KP++  +  MAAS GY ++CA   IVA 
Sbjct: 347 SAKAVVLRIDSPGGSALASDLLWQKLMRLRQQKPLVVSIGGMAASGGYYLACAGTKIVAE 406

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP------MKAEPSPFSEVNPKAVQMM 178
            TS++GSIGV+     V   L  +G++ ++V ++P        A  S  +  +      +
Sbjct: 407 RTSIIGSIGVVGGKFAVGKALADIGINAETVAANPDPQRAARAAYMSALTPWDEPTRARV 466

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
              +++ Y  F++ ++  RN+P +     ++GRI+ G EA    L+D +GG E       
Sbjct: 467 LASMEAVYDLFLKRITAGRNLPLETIAPSAEGRIFGGVEAAGRSLVDELGGLERAIALAR 526

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP--LMKQTKVQGLWAVWNP 293
            L    +   ++                  +           +K+   + + +V  P
Sbjct: 527 ELAELPTDAPVEIEQDDGGLLELLATGDEANEGSARAPDRAALKERAREAMASVLLP 583



 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 84/230 (36%), Gaps = 5/230 (2%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI-TEVHEMAASA 110
           +L++ +  +S   SA   +V L S   +      I R +  V+     +     E   + 
Sbjct: 76  QLVQSLRALSESASAKGFLVRLGSARLAFARAHEIGRILGDVRAAGRPVVCHADEYNNAT 135

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
             L S A + +  +    V ++G+  Q  + K  LDKL V +  ++    K    PF+  
Sbjct: 136 MLLASIACSKLWLSPAGQVDTVGIAAQLVFAKGLLDKLNVDVDFLQVGKFKGASEPFTRE 195

Query: 171 --NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
             +P+A + ++  +      ++  + E R    +      +   +   EAK   L+D +G
Sbjct: 196 GASPEARRSLESALGGVREVWLSAIVEGRG--KEALREALEDGPFAPEEAKARALVDEIG 253

Query: 229 GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278
             E   +    L   +         P    +   L ++  S     ++  
Sbjct: 254 DLESATEDAKKLAGTERSVPRFGGAPRDASFSRSLVDVFRSVSGASSLGA 303


>gi|23009603|ref|ZP_00050591.1| COG0616: Periplasmic serine proteases (ClpP class)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 320

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/263 (24%), Positives = 106/263 (40%), Gaps = 17/263 (6%)

Query: 30  HVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSA 80
                +P VA + + G I              +   +ER        A+ + ++SPGGS 
Sbjct: 16  RFRKAAPRVAVVRLSGAIGAVSPIRPGLSIATVAPSLERAFAVPDVAAVALIINSPGGSP 75

Query: 81  YAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
                IFR I+ +   K V     V + AAS GY+I+CA++ IVA   SLVGSIGV+   
Sbjct: 76  VQSHLIFRRIRALAAEKKVKVFAFVEDAAASGGYMIACAADEIVADPASLVGSIGVVSAG 135

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                 ++++G+  +       KA   PF   NP+ +  ++++       F  LV E R 
Sbjct: 136 FGFDRLIERIGIERRVHTQGEAKAMLDPFRPENPQDIARLKEIQADVQALFTGLVRERR- 194

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
                   L  G +WTG +A  +GL+D +G      +  Y         +++     +  
Sbjct: 195 PTLTADRDLFTGAVWTGRQALDLGLVDALGDLRGTLRERYG-----EDVELRLIAETRGS 249

Query: 259 WFCDLKNLSISSLLEDTIPLMKQ 281
           W   L   +      +    +  
Sbjct: 250 WLARLLRRAGPGQTAELADALIA 272


>gi|23501300|ref|NP_697427.1| protease IV [Brucella suis 1330]
 gi|148560700|ref|YP_001258420.1| putative protease IV [Brucella ovis ATCC 25840]
 gi|161618370|ref|YP_001592257.1| peptidase S49 [Brucella canis ATCC 23365]
 gi|163842678|ref|YP_001627082.1| peptidase S49 [Brucella suis ATCC 23445]
 gi|256368852|ref|YP_003106358.1| protease IV, putative [Brucella microti CCM 4915]
 gi|23347188|gb|AAN29342.1| protease IV, putative [Brucella suis 1330]
 gi|148371957|gb|ABQ61936.1| putative protease IV [Brucella ovis ATCC 25840]
 gi|161335181|gb|ABX61486.1| peptidase S49 [Brucella canis ATCC 23365]
 gi|163673401|gb|ABY37512.1| peptidase S49 [Brucella suis ATCC 23445]
 gi|255999010|gb|ACU47409.1| protease IV, putative [Brucella microti CCM 4915]
          Length = 368

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64
           L      ++              +  + + G I                   +E+   D 
Sbjct: 75  LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 134

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122
            A A+ +S++SPGG+      I+R I+ +  +++K V   V ++AAS GY+I+ A + I+
Sbjct: 135 HAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 194

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A  +S+VGSIGV+         L K+GV  +   +   K    PF     + ++ ++ + 
Sbjct: 195 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 254

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              +  F+ +V E R         L  G  WTG  A  +GLID +G      +  Y    
Sbjct: 255 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 311

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291
                K+K   P +      L  + + S   +   +       GL       A+W
Sbjct: 312 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 363


>gi|145225602|ref|YP_001136280.1| signal peptide peptidase SppA, 67K type [Mycobacterium gilvum
           PYR-GCK]
 gi|145218088|gb|ABP47492.1| signal peptide peptidase SppA, 67K type [Mycobacterium gilvum
           PYR-GCK]
          Length = 595

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 119/290 (41%), Gaps = 32/290 (11%)

Query: 34  NSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALIVSLSSPG 77
           N   +A + + G I                     +   +   + DD   A++V + SPG
Sbjct: 300 NRRRIAVVTVHGPIVSGRGGRQMSPRGGSNAGGDTIAAALREAAADDDVAAIVVRVDSPG 359

Query: 78  GSAYAGEAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GS  A E I+R + + +     +   +  +AAS GY +S A++ IVA   ++ GSIGV+ 
Sbjct: 360 GSVTASETIWREVVRARESGTPVVASMGSVAASGGYYVSMAADAIVANPATITGSIGVVT 419

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                +   ++LGV   SV+++      S  +    +    +    D  Y  FV  V+E 
Sbjct: 420 GKLVARDLKERLGVGSDSVRTNANADAWSINAPFTEEQHAQVAAEADLFYDDFVARVAEG 479

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R +  D    ++ GR+WTGA+A   GL+D +GG         AL       K++    P 
Sbjct: 480 RGLSVDAVEKVARGRVWTGADALDRGLVDELGGLRTAVTRAKALAGIDEDTKVELQMLPG 539

Query: 257 NYWFCDLK----NLSISSLLEDTIPLMK-----------QTKVQGLWAVW 291
                 L+    +   ++ L + +  +            Q  + G+ A+W
Sbjct: 540 ASLRDVLRPKPSSQPAAASLPELLGALAIQSVAGVVDQTQRSLSGVNALW 589



 Score = 93.5 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 85/231 (36%), Gaps = 2/231 (0%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79
           +  +    +         VA ++  G+    +E +  + R + D     LI  +     +
Sbjct: 34  ILELDLQSAPPESAGFDPVALLSGAGRPLLLREAVSALHRAAEDPRVAGLIARVQIDAAA 93

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
             A + +  AI     +KP +        +  Y ++ A   +    +  +G +G      
Sbjct: 94  PGAVQELREAIVAFTAKKPSLAWAETYPGTLSYYLASAFGEVWMQPSGTLGLVGFATNAL 153

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +++  LDKLGV  + +     K+ P+ F+E        +    +V+         V+ SR
Sbjct: 154 FLRDALDKLGVEAQFIAKGEYKSAPNLFTEDRYTEPHREADTALVNGLRTQVWDAVAASR 213

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            I       L+D       +A   GLID VG ++E +  +  +     +  
Sbjct: 214 GIDVATLDALADRAPLLRDDAVTAGLIDRVGFRDEAYARIADMAGADGVSP 264


>gi|163867860|ref|YP_001609064.1| protease [Bartonella tribocorum CIP 105476]
 gi|161017511|emb|CAK01069.1| protease [Bartonella tribocorum CIP 105476]
          Length = 282

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/285 (21%), Positives = 118/285 (41%), Gaps = 18/285 (6%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATAL 69
            + V+          N   +  + ++G I DS  +            +E+      +  +
Sbjct: 1   MIDVLKNFIQRRFSSNKFEIPVVRLKGAIMDSSSISRTLSLSRCANLLEKAFAHKKSPVV 60

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
            + ++SPGGS      IF+ I+ +  +  K V+  + ++AAS GY+I+CA + I A  +S
Sbjct: 61  ALIINSPGGSPVQSRFIFKRIRDLAEEKNKKVLVFIEDIAASGGYMIACAGDEIFADPSS 120

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           +VGSIGV+         L K+GV  +   +   K    PF       ++ ++ +    + 
Sbjct: 121 IVGSIGVVSASFGFPELLKKIGVERRVYTAGKNKVTLDPFQPEKKADIEHLKSLQLEVHQ 180

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F+ LV E R         L  G  W+G ++ ++GLID +     V +  +      S  
Sbjct: 181 TFIDLVKERRATKLSDDSNLFTGMFWSGKKSVELGLIDGLNDVRSVIKERFG-----SDA 235

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           K++   PPK++      +   +  +   +        +   A+W 
Sbjct: 236 KLRLITPPKSFLGFKAPSGVTAHTVYTAVDSALMAAEE--RALWQ 278


>gi|329851486|ref|ZP_08266243.1| signal peptide peptidase SppA, 67K type [Asticcacaulis biprosthecum
           C19]
 gi|328840332|gb|EGF89904.1| signal peptide peptidase SppA, 67K type [Asticcacaulis biprosthecum
           C19]
          Length = 593

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 124/292 (42%), Gaps = 22/292 (7%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIED---------------SQELIERIERISRD 63
            +++  +S +   +     +A I   G I                 S ++ E      +D
Sbjct: 274 VMSLADYSRTLAPDSKGETIAIIDGEGAIMTGKGGGGGFGSQKMMMSDDVSEAFYTAIKD 333

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIV 122
               A++  +SSPGGS  A   I  A++   +  KPV+  + + AAS GY I+  ++ IV
Sbjct: 334 PKVKAIVFRVSSPGGSDTASAQIAEAMKDAKEAGKPVVVSMGDYAASGGYWIASGASAIV 393

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSI-KSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
           A  ++L GSIGV      +   L + GV I             S     +P     +   
Sbjct: 394 ANPSTLTGSIGVFGGKFAIGDALARFGVDIKDIHVGGDYTEVFSEAKGFSPTQRAALSSW 453

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           +D  Y+ F+  V+  RN+P DK   L+ GR+WTGA+A +  L+D  GG      +  +L 
Sbjct: 454 IDQIYNSFITHVAAGRNLPEDKVRELAKGRVWTGAQAVEHRLVDKAGGFYAAVDTAKSLA 513

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
              +  +++    P            +S+ ++ ++  +K     G WA+ +P
Sbjct: 514 KIDASAQVRLVRYPSKP----SMFGGVSNSVQMSLTGLKTLSFLG-WAMSDP 560



 Score = 80.8 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 84/218 (38%), Gaps = 7/218 (3%)

Query: 43  IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102
           + G    + E++  + R + D    A+ + L   G S  A E I  AI  V+     +  
Sbjct: 64  LTGSTLSTVEVVTTLHRAADDPKVKAVFMRLPEGGMSPAAAEEIREAIIYVRRASKPVIA 123

Query: 103 VHEMAASA-----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +    +      Y++  +S+ +     S     G+     + K   DK G+S +  + 
Sbjct: 124 HSQGLYPSGMVISSYMLGASSSELWMQPRSSFQVTGISSSEMFFKDAFDKYGISAQYEQR 183

Query: 158 SPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215
           +  K   +P+  ++  P+  +     + S Y   +  ++  R +         +   +  
Sbjct: 184 AEFKNAVNPYLYNDFTPEHREATLSWMGSIYQSMIGNIASDRRLDKTVVQTTLEAGPYGA 243

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
            +A ++GLI  +G   +  Q+    G +  +  + D++
Sbjct: 244 EKALELGLITHLGQVHDAEQAALKRGTNAKVMSLADYS 281


>gi|325262473|ref|ZP_08129210.1| peptidase, U7 family [Clostridium sp. D5]
 gi|324032305|gb|EGB93583.1| peptidase, U7 family [Clostridium sp. D5]
          Length = 335

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/272 (23%), Positives = 125/272 (45%), Gaps = 20/272 (7%)

Query: 34  NSPHVARIAIRGQIEDSQ--------------ELIERIERISRDDSATALIVSLSSPGGS 79
             P+V  +++ G IE                  L++ I+ +  D + + +++ + SPGG+
Sbjct: 60  TEPYVGIVSVYGTIEPQTRTGTFDQPQSYQHLALMDYIDAMMYDPNNSGILLDVDSPGGT 119

Query: 80  AYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
            Y G  ++  I + ++   +PV T ++   ASA Y I+  S+ I A ++++ GSIGV+  
Sbjct: 120 TYEGVELYDKIVEYRDATGRPVWTYMNHYGASAAYYIAAPSDRIGANKSTMTGSIGVIMS 179

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
              +    +KLG+   SV +   K   SP    N + +++ QD++   Y  FV  V+E R
Sbjct: 180 GYDLSGLYEKLGIKYYSVTTGDNKDMSSP----NEEQLEIYQDIIAEEYDRFVGAVAEGR 235

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
            +P      L+DGR ++  +A   GLID +   E++   +     + +  +     PP  
Sbjct: 236 GMPDKAVRELADGRPYSAQQAVDNGLIDEITTFEDLAVEMQYEVGNTTFYQPDIIEPPLA 295

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
             F   + +   S ++    L ++     L +
Sbjct: 296 SLFGKAEEILPKSDMQVLSELTEKYGSGVLMS 327


>gi|296137880|ref|YP_003645123.1| peptidase S49 [Tsukamurella paurometabola DSM 20162]
 gi|296026014|gb|ADG76784.1| peptidase S49 [Tsukamurella paurometabola DSM 20162]
          Length = 306

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 114/288 (39%), Gaps = 33/288 (11%)

Query: 29  SHVEDNSPHVARIAIRGQIE--------DSQELIER------IERISRDDSATALIVSLS 74
           S +      V  + + G I          S+ ++        + +    D A A+ ++L+
Sbjct: 21  SALGQAGGVVPVVRLEGPIAAPALSGGLSSRGVLNLAGVETVLRKAFETDDAVAVALALN 80

Query: 75  SPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           SPGGS    E I   I+++  +   PV+    ++AAS GY ++CA++ I    TS+VGSI
Sbjct: 81  SPGGSPAQSELIGARIRQLAEKHDLPVLAFCEDVAASGGYWLACAADEIFVTSTSIVGSI 140

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GV+      K  ++K+G+  +   +   K     F +V    V+ +  V    +  F   
Sbjct: 141 GVISASFGAKDLIEKIGLERRVFTAGESKHRLDMFEDVREADVEWLHGVQGDIHSAFRTW 200

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           V+E R         L  G +W GA+A ++GL D VG           L       +I+  
Sbjct: 201 VTERRGARLGDDPALFTGEVWIGAKAVELGLADGVGTLR------GTLADRFPEAEIETM 254

Query: 253 NPPKNYWFCDLKNLSI-----------SSLLEDTIPLMKQTKVQGLWA 289
           + PK      L   +            +         +     +GLWA
Sbjct: 255 HTPKPLLARLLSGGTSIADGGLAGAAAALTTGALDGALSGLHRRGLWA 302


>gi|126463497|ref|YP_001044611.1| peptidase S49 [Rhodobacter sphaeroides ATCC 17029]
 gi|126105161|gb|ABN77839.1| peptidase S49 [Rhodobacter sphaeroides ATCC 17029]
          Length = 265

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 110/258 (42%), Gaps = 14/258 (5%)

Query: 34  NSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             P V  I ++G I          Q L   IE+  R      + + ++SPGGS      I
Sbjct: 10  KDPVVPVIRLQGVIASGPRGGLSDQGLAAVIEKAFRRGKPAGVALVINSPGGSPVQSSLI 69

Query: 87  FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
              I+++ + K   V   V ++AAS GY ++CA + I   E+SLVGSIGV+F       F
Sbjct: 70  AARIRRLASEKGVRVHAFVEDVAASGGYWLACAGDEIWVDESSLVGSIGVIFSSFGFHEF 129

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           + + G+  +   +   K+   PF    P+ V+ ++ + +  +  F+  V   R    D  
Sbjct: 130 MARNGIERRVHTAGRSKSLADPFLPEKPEDVERLKALQEPIHRAFIEHVKRHRGARLDLN 189

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             L +  +WTG EA ++GL D V       Q +Y         ++  +   + +      
Sbjct: 190 ADLFNADVWTGQEAVRLGLADGVAHLVPKLQEIYG-----DKVRLVPYGQRRPFLQRLGM 244

Query: 265 NLSISSLLEDTIPLMKQT 282
           +L+  +L E     +   
Sbjct: 245 SLAGQALAEVENRALWAR 262


>gi|19704606|ref|NP_604168.1| protease IV [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|19714902|gb|AAL95467.1| Protease IV [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 565

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 14/236 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLS 74
              + D++  V  I + G I +SQ             E +E++     ++   A+++ ++
Sbjct: 282 EGSMVDSNNIVYVIPLEGDIVESQTEVFSGEENINVSETLEKLNIAKENNKVKAVVLRVN 341

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGGSA   + I + ++++   KPV   +  +AAS GY IS  ++ I     ++ GSIGV
Sbjct: 342 SPGGSALTSDIIAKKVKELAEEKPVYVSMSSVAASGGYYISTNAHKIFVDRNTITGSIGV 401

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +   P     +   GV+I+ +         S  S    K    + +     Y  F+ +VS
Sbjct: 402 VSILPDFSKLITDNGVNIEKISDGEYSDLYSADS-FTEKKYNKIYNSNLKVYEDFLSVVS 460

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
           + R I  +K   +++GRIWTG EA K+GL D +GG  E   ++           + 
Sbjct: 461 KGRRIDKEKLKTIAEGRIWTGDEAIKIGLADEIGGLNETIYAIAEDNNMDEYGIVI 516



 Score = 67.7 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 10/210 (4%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASA 110
            L++ IE IS DD    +I+ L+    S    E +   I   +   K +I     +    
Sbjct: 71  TLLQSIEAISYDDRVEGIILKLNGDSLSYAQSEELAHEISMARAANKKIIAYFENVGRKN 130

Query: 111 GYLISCASNIIVAAETSLVGSIGVLF-QYPYVKPFLDKLGVSIKSVKSSPMKAEPS--PF 167
            YL S A+ I + +  S   +I   F +  Y+K   DK GV    +     K+       
Sbjct: 131 YYLASYANEIYMPSANSTNVNIYPYFKENFYIKGLADKFGVKFNIIHVGDYKSYMENLAS 190

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEA--KKVGLI 224
           + ++ +A +    V+D +Y+ F+ +VS +R I  +     + DG +   + A      LI
Sbjct: 191 NTMSKEAKEDTVRVLDKNYNNFLDVVSLNRKINREDLDKIIKDGELVAASSADLMNNNLI 250

Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           D     + V   +   G    I  I+++  
Sbjct: 251 DKYVYWDNVISMV---GGKDKIITIQEYAK 277


>gi|83952481|ref|ZP_00961212.1| peptidase, family S49 [Roseovarius nubinhibens ISM]
 gi|83836154|gb|EAP75452.1| peptidase, family S49 [Roseovarius nubinhibens ISM]
          Length = 280

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 107/259 (41%), Gaps = 19/259 (7%)

Query: 34  NSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
           + P VA + + G I          + +   I++        A+ + ++SPGGS      I
Sbjct: 23  SRPRVAVVRLAGTIGSGPRAALSDEAIGPVIDKAFARGKPKAVALVINSPGGSPVQSALI 82

Query: 87  FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
              I+++   K  PV   V ++AAS GY ++ A++ I     S++GSIGV+        F
Sbjct: 83  AARIRRLSEEKGVPVHAFVEDVAASGGYWLAVAADDIWVDYGSILGSIGVISAGFGAHVF 142

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L + G+  +   +   K+   PF     + V  ++ ++   +  F+  V   R     + 
Sbjct: 143 LARQGIERRVYTAGESKSTLDPFQPEKKEDVARLESLLAQMHTGFIDHVKARRGDKLSRD 202

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             L  G  W G +A ++GL D     E   + LY         K+  +   K  +     
Sbjct: 203 EKLFTGEFWIGRQAVELGLADGEAHLEPKLKELYG-----DKVKLLRYGRKKGLFQRF-- 255

Query: 265 NLSISSLLEDTIPLMKQTK 283
               +S++ED +  +++  
Sbjct: 256 ---GASVVEDALIAVEERA 271


>gi|317503476|ref|ZP_07961513.1| signal peptide peptidase SppA [Prevotella salivae DSM 15606]
 gi|315665427|gb|EFV05057.1| signal peptide peptidase SppA [Prevotella salivae DSM 15606]
          Length = 588

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 122/265 (46%), Gaps = 17/265 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIED---SQELIERIERISRDD------------SATALIV 71
                + +  H+A     G I D    Q + +   +I  +D               A+++
Sbjct: 289 NDDEEQVSGKHIAVYYAYGDIVDKASPQSIFQDARQIVGNDMCKDLKDLADDDDVEAVVI 348

Query: 72  SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
            ++S GGSAYA E I+  I +++  KPV+  +   AAS GY +SC ++ I+A  T++ GS
Sbjct: 349 RVNSGGGSAYASEQIWHQISELRKVKPVVVSMGGAAASGGYYLSCNADWIIADPTTITGS 408

Query: 132 IGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           IG+   +P     L  KLG+    VK++      +      P+ + ++Q  ++  Y  F 
Sbjct: 409 IGIFGLFPDWSELLTKKLGIKYAEVKTNRNAVFGASGHPFTPEQLSLLQQNINRGYMLFK 468

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
           + V+E R +P      ++ GR+W G +A K+ LID +GG ++  +    L       K  
Sbjct: 469 KRVAEGRQLPMYLVEKIAQGRVWLGQDAIKLKLIDQLGGLDDAIEKAAKLANLTD-YKTA 527

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDT 275
            +    + W   + + + S  L D+
Sbjct: 528 SYPSQLSSWEQLIGSYTGSDDLLDS 552



 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 90/261 (34%), Gaps = 21/261 (8%)

Query: 14  MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------------QELIER 56
           ++  + L  +  + S+  + +   V  + + G + +                  +  +  
Sbjct: 24  IIGFLCLIGLIATSSTTTKIDKNSVLVLKLDGNMTEQNEENVMNSLQGVSTLSFEGTMNA 83

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116
           I++   +D    + +     G      E I +A+Q  +     I    E  ++  Y ++ 
Sbjct: 84  IKKAKENDKVAGIYLEAGQFGADLAQAEEIEKALQDFRKSGKWIIAYGEDYSTLSYYLAS 143

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKA 174
           A+N I   +   V   G+  +  Y K  L K G+   + K    K+  E      ++   
Sbjct: 144 AANKIYMNKQGGVEWAGIGGEKVYYKNALAKFGIKFITTKVGKYKSAVEQMTADSISDAD 203

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI--WTGAEAKKVGLIDVVGGQEE 232
            +  Q  +D  ++  +  V+++R++  D     +D  I         K  ++D +   ++
Sbjct: 204 REQTQRYLDGWWNTILTTVAQNRHLNKDSLNAYADRVISLEPAENILKYKMVDGLIYNDD 263

Query: 233 VWQSLYALGVDQSIRKIKDWN 253
           +   +           I    
Sbjct: 264 ISGVVKKQLGIDQDDDINKIT 284


>gi|315445955|ref|YP_004078834.1| signal peptide peptidase SppA, 67K type [Mycobacterium sp. Spyr1]
 gi|315264258|gb|ADU01000.1| signal peptide peptidase SppA, 67K type [Mycobacterium sp. Spyr1]
          Length = 595

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 119/290 (41%), Gaps = 32/290 (11%)

Query: 34  NSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALIVSLSSPG 77
           N   +A + + G I                     +   +   + DD   A++V + SPG
Sbjct: 300 NRRRIAVVTLHGPIVSGRGGRQMSPRGGSNAGGDTIAAALREAAADDDVAAIVVRVDSPG 359

Query: 78  GSAYAGEAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GS  A E I+R + + +     +   +  +AAS GY +S A++ IVA   ++ GSIGV+ 
Sbjct: 360 GSVTASETIWREVVRARESGTPVVASMGSVAASGGYYVSMAADAIVANPATITGSIGVVT 419

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                +   ++LGV   SV+++      S  +    +    +    D  Y  FV  V+E 
Sbjct: 420 GKLVARDLKERLGVGSDSVRTNANADAWSINAPFTEEQHAQVAAEADLFYDDFVARVAEG 479

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R +  D    ++ GR+WTGA+A   GL+D +GG         AL       K++    P 
Sbjct: 480 RGLSIDAVEQVARGRVWTGADALDRGLVDELGGLRTAVTRAKALAGIDEDTKVELQMLPG 539

Query: 257 NYWFCDLK----NLSISSLLEDTIPLMK-----------QTKVQGLWAVW 291
                 L+    +   ++ L + +  +            Q  + G+ A+W
Sbjct: 540 ASLRDVLRPKPSSQPAAASLPELLGALAIQSVAGVVDQTQRSLSGVNALW 589



 Score = 93.5 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 85/231 (36%), Gaps = 2/231 (0%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79
           +  +    +         VA ++  G+    +E +  + R + D     LI  +     +
Sbjct: 34  ILELDLQSAPPESAGFDPVALLSGAGRPLLLREAVSALHRAAEDPRVAGLIARVQIDAAA 93

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
             A + +  AI     +KP +        +  Y ++ A   +    +  +G +G      
Sbjct: 94  PGAVQELREAIVAFTAKKPSLAWAETYPGTLSYYLASAFGEVWMQPSGTLGLVGFATNAL 153

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +++  LDKLGV  + +     K+ P+ F+E        +    +V+         V+ SR
Sbjct: 154 FLRDALDKLGVEAQFIAKGEYKSAPNLFTEDRYTEPHREADTALVNGLRTQVWDAVAASR 213

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            I       L+D       +A   GLID VG ++E +  +  +     +  
Sbjct: 214 GIDVATLDALADRAPLLRDDAVTAGLIDRVGFRDEAYARIADMAGADGVSP 264


>gi|83310697|ref|YP_420961.1| periplasmic serine protease [Magnetospirillum magneticum AMB-1]
 gi|82945538|dbj|BAE50402.1| Periplasmic serine protease [Magnetospirillum magneticum AMB-1]
          Length = 582

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/268 (25%), Positives = 117/268 (43%), Gaps = 17/268 (6%)

Query: 37  HVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
            VA I+  G I                SQ + E       DD+   ++  + SPGGS  A
Sbjct: 298 KVALISGIGAIHRGESHHGLDGDGDFGSQTVAEAFRDAVDDDAVKVILFRVDSPGGSYIA 357

Query: 83  GEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
            + +   +++ +   K V+  +   AAS GY ++  ++ I+AA  ++ GSIGV      +
Sbjct: 358 SDTVHHEVERARKAGKKVVVSMGNYAASGGYFVAMGADRIIAAPGTITGSIGVFTGKVVL 417

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
             F  KLG+S   +         S     + +A   +  ++D  Y  F    S +RN+  
Sbjct: 418 DEFWKKLGISWDEMHRGDNAGMWSANQPFSSQAKARIDTLLDHIYADFTGKASAARNLDA 477

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPKNYW 259
            +   L+ GRIWTGA+AK+ GL+D +GG  E    +  +G  +      + ++  P+  W
Sbjct: 478 ARMDKLARGRIWTGADAKQSGLVDGLGGWAEALSQVRQVGGLKVDETLTLVEFPRPRKPW 537

Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQGL 287
               ++L   S+ E  I    +  +  L
Sbjct: 538 QVLAESLGGGSVAERRILARIEPLLDVL 565



 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 83/206 (40%), Gaps = 7/206 (3%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
             ++++E ++R + D   + +  +L          + +  A+ + +          E   
Sbjct: 76  GLRQVVEALDRAAADSRVSGVFATLGHSPLGLAGRQDLRDAVARFRASGKPAVLFAETLG 135

Query: 109 SA-----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
                   Y ++ A + +    +  VG  G+  + P++K  LD LG+  +       K+ 
Sbjct: 136 EGGSGTLDYYLATAFSQVWLQPSGDVGLTGLWVESPFIKGTLDLLGIKAQFSGRHEYKSA 195

Query: 164 PSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221
              F+E    P   + +  ++DS     V  ++ +R +P  +   L     +  +EA   
Sbjct: 196 IDMFTETGFTPAHRENLGRLLDSWSEQIVAGIAAARGLPEPQVRELMGKGPFLASEALAA 255

Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIR 247
            L+D VG ++E W  +  +G D++  
Sbjct: 256 RLVDKVGYRDEAWGMIAGIGKDKAEE 281


>gi|56698460|ref|YP_168834.1| S49 family peptidase [Ruegeria pomeroyi DSS-3]
 gi|56680197|gb|AAV96863.1| peptidase, family S49 [Ruegeria pomeroyi DSS-3]
          Length = 281

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 66/282 (23%), Positives = 119/282 (42%), Gaps = 19/282 (6%)

Query: 11  RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRD 63
           R + +     T    + +   +   P VA + + G I        +   L   +ER  R 
Sbjct: 3   RVLFVGRARSTSAAMTLALPFKKKPPLVAVVRLSGAIGLAGRGALNDTTLAPMLERAFRK 62

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNII 121
               A+ + ++SPGGS      I   I+++      PV   V ++AAS GY ++CA++ I
Sbjct: 63  GKPAAVALEINSPGGSPVQSSLIGARIRRLAAEHKVPVYAFVEDVAASGGYWLACAADEI 122

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
            A ++S++GSIGV+        FL + G   +   +   K+   PFS    + V  ++ +
Sbjct: 123 WADDSSVLGSIGVISASFGAHVFLARQGFERRVHTAGKSKSMLDPFSPEKKEDVTRLKGL 182

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           +   +  F+  V E R    D T  L  G +W GA A+ +GLID +   +   Q  +   
Sbjct: 183 LGDIHQNFISHVKERRGDRLDATEDLFTGEVWLGARARDLGLIDGIAHLKPKMQERFG-- 240

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
                 + + +   + +W           L ED +  +++  
Sbjct: 241 ---DKVRFRRYGVRRPFWSRF-----GVHLAEDALAGIEERA 274


>gi|297734121|emb|CBI15368.3| unnamed protein product [Vitis vinifera]
          Length = 425

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/272 (23%), Positives = 113/272 (41%), Gaps = 17/272 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSL 73
           W+  +      +A I   G I               S++ IE+I  +       A+I+ +
Sbjct: 114 WTLGLSGGKDQIAVIRASGSISRVRSPFSIPGSGITSEQFIEKIRSVRDSKRYKAVIIRI 173

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
            SPGG A A + ++R I+ +   KPVI  + ++AAS GY ++  +  IVA   +L GSIG
Sbjct: 174 DSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGTIVAENLTLTGSIG 233

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP-FSEVNPKAVQMMQDVVDSSYHWFVRL 192
           V+     +    +K+G + + +         +       P   ++      ++Y  F   
Sbjct: 234 VVTGKFNLGTLYEKIGFNKEIISRGRFAELTAAEQRPFRPDEAELFAKSAQNAYKQFRDK 293

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--K 250
            + SR++  DK    + GR+WTG +A   GL+D +GG                 R +   
Sbjct: 294 AAFSRSMAVDKMEENAQGRVWTGKDAASRGLVDAIGGLSRAVAIAKQKADIPQDRPVTLV 353

Query: 251 DWNPPKNYWFCDLKNLSISS-LLEDTIPLMKQ 281
           + + P       L  +  S   +E T+  + Q
Sbjct: 354 ELSRPSPTVSEILTGIGSSIVGVERTLKELLQ 385


>gi|260576443|ref|ZP_05844433.1| peptidase S49 [Rhodobacter sp. SW2]
 gi|259021326|gb|EEW24632.1| peptidase S49 [Rhodobacter sp. SW2]
          Length = 266

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/276 (22%), Positives = 113/276 (40%), Gaps = 28/276 (10%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPG 77
             +      P VA I + G I            + L   IER        A+ + ++SPG
Sbjct: 3   IRNPFAVQPPWVAVIRLSGAIGAGGRTGAGLSDEALAPVIERAFSRGKPKAVALVINSPG 62

Query: 78  GSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           GSA     I   I+++   K  PV   V ++AAS GY ++CA++ I   ++S+VGSIGV+
Sbjct: 63  GSAVQSSLIAARIRRLSKEKKVPVHAFVEDVAASGGYWLACAADHIWVDDSSIVGSIGVI 122

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
           F        + + GV  +   +   K+   PF    P+    +  +    +  F+  V  
Sbjct: 123 FASFGFPELMKRQGVERRVHTAGRSKSLADPFLPEKPEDAARLLALAAPIHQAFIAHVKA 182

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
            R     +   L +  +W G +A  +GL D V       ++LY   VD     +  +   
Sbjct: 183 RRGARLAEAD-LFNADVWVGQQAVDLGLADGVAHLVPKLKALYGDKVD-----LVPYGRR 236

Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
           ++ +         + ++ D +  +++       A+W
Sbjct: 237 RSLFQRF-----GARMVGDALAEVEER------ALW 261


>gi|88811815|ref|ZP_01127068.1| protease IV [Nitrococcus mobilis Nb-231]
 gi|88790699|gb|EAR21813.1| protease IV [Nitrococcus mobilis Nb-231]
          Length = 614

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/215 (28%), Positives = 110/215 (51%), Gaps = 10/215 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSL 73
           +  S     +D    V  I + G I D +          + ++I    RD    ALI+ +
Sbjct: 306 LQASGGLQADDQPGKVGLITMEGPIADGESRPGIVGGDTIAQQIRDARRDHGIAALILRV 365

Query: 74  SSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           +SPGGSA A E + R +    +  KPV+  +  +AAS GY  +  +N I A  ++L GSI
Sbjct: 366 NSPGGSATASEVVRREVAATRQAGKPVVVSMSAVAASGGYWAAMNANQIWAQASTLTGSI 425

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           G+    P V+  L+KLG+    V +  +         ++P+  +++Q V++  Y  F+  
Sbjct: 426 GIFGLLPNVQTTLEKLGIHPDGVGTHALTGALRADRPLSPEGARLVQLVIEQGYQRFIHR 485

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
           V+++R +  +    ++ GR+W+G +AK++GL+D +
Sbjct: 486 VAQARGMSVEAVDRIAQGRVWSGRDAKRLGLVDHL 520



 Score = 76.2 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 75/205 (36%), Gaps = 11/205 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           ++L+  + R + D   T  ++ L           + +  AI+  +     +    +    
Sbjct: 87  RDLLVALRRGASDSRITLAVLQLDELQQAGMAQLQELGGAIRDFRASGKKVIAYAQSYTQ 146

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS- 168
             Y ++  ++ +       V   G      Y +  LD+LGV +   +    KA   PF  
Sbjct: 147 LQYYLAALADKVYLDPLGAVLLQGFGVYQHYFRDALDELGVKVHVFRVGQYKAAVEPFMR 206

Query: 169 -EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW--------TGAEAK 219
            +++P+A +     + + +  +   V+ SR +P        D            T A A+
Sbjct: 207 NDMSPQARRENLIWLHTLWDVYKSDVAHSRGLPPSAIDRYIDNLPVELAAHDGDTAALAR 266

Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQ 244
             GL+D +    E+   L ++  + 
Sbjct: 267 SAGLVDKLVTPAELRAELASIVGED 291


>gi|84515710|ref|ZP_01003071.1| peptidase, family S49 [Loktanella vestfoldensis SKA53]
 gi|84510152|gb|EAQ06608.1| peptidase, family S49 [Loktanella vestfoldensis SKA53]
          Length = 263

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 112/262 (42%), Gaps = 18/262 (6%)

Query: 30  HVEDNSPHVARIAIRGQIE------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
               ++P VA I ++G I       D   L   IE+        A+ + ++ PGGS    
Sbjct: 5   PFTKSAPFVAVIRLQGAISNSGRGLDDPGLAPVIEKAFSKGKPAAVALEINCPGGSPVQS 64

Query: 84  EAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
             I   I+++ + K  PV   V ++AAS GY ++CA++ I     S+ GSIGV+      
Sbjct: 65  SLIASRIRRLADEKKIPVFAFVEDVAASGGYWLACAADEIFIDACSITGSIGVISAGFGA 124

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              +D+ G+  +   +   K+   PF   NP  V+ ++  +D  +  F+  V   R +  
Sbjct: 125 HEAIDRYGIERRVHTAGKSKSLLDPFKPQNPADVKKLKGWLDDLHATFIAYVKSRRGLKL 184

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                L  G ++ G +    GL+D +G    V ++ +         K + +   K     
Sbjct: 185 SDDPDLFTGEVYIGQKGIDAGLVDGIGHLAPVMKARFG-----DKVKFRRYGQRKPLLAR 239

Query: 262 DLKNLSISSLLEDTIPLMKQTK 283
                  + +++D+I ++++  
Sbjct: 240 F-----GAQIVDDSIAVIEERA 256


>gi|254562274|ref|YP_003069369.1| protease SohB, belong to MEROPS peptidase family S49
           [Methylobacterium extorquens DM4]
 gi|254269552|emb|CAX25518.1| protease SohB, belong to MEROPS peptidase family S49 (protease IV
           family, clan S-) [Methylobacterium extorquens DM4]
          Length = 286

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/273 (25%), Positives = 117/273 (42%), Gaps = 19/273 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSA 80
              +  P VA + + G I     +            +ER       +A+ + ++SPGGS 
Sbjct: 16  RFRETPPRVAVVRLSGAIGAVSPIRPGLSIGTVAPSLERAFTMPGLSAVALVINSPGGSP 75

Query: 81  YAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
                I+R I+ +   K +     V + AAS GY+I+CA++ IVA   SLVGSIGV+   
Sbjct: 76  VQSHLIYRRIRALAAEKEIKVFAFVEDAAASGGYMIACAADEIVADPASLVGSIGVVSAG 135

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                 ++++G+  +       KA   PF   NP+ +  ++++       F  LV E R 
Sbjct: 136 FGFDRLIERIGIDRRVHTQGEAKAMLDPFRPENPQDIARLKEIQADVQALFSGLVRERR- 194

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              D +  L  G +WTG +A  +GL+D +G      ++ Y   VD     ++     +  
Sbjct: 195 PTLDASRDLFTGAVWTGRQALDLGLVDALGDLRGTLRARYGEKVD-----LRLVAENRGS 249

Query: 259 WFCDLKNLSISSLLEDTIP--LMKQTKVQGLWA 289
           W   L   +        +P  L+   + +  WA
Sbjct: 250 WLARLLRRAGPGQTTAGLPDALIAAVEERAAWA 282


>gi|52549671|gb|AAU83520.1| protease IV [uncultured archaeon GZfos30H9]
          Length = 251

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 111/242 (45%), Gaps = 12/242 (4%)

Query: 33  DNSPHVARIAIRGQIEDSQE----------LIERIERISRDDSATALIVSLSSPGGSAYA 82
                +A I I+G I   +           LI+ IE         A++  ++SPGG+ +A
Sbjct: 7   KEKGSIAIIPIKGMITSEESGFGLMAASTVLIKDIEEAEIKRKIKAVLFEINSPGGTPFA 66

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            + I   I+ +   KP I  V E AAS  Y I+ A + IVA E S VGSIG +   P + 
Sbjct: 67  SKEIATCIENM--DKPAIAWVREYAASGAYWIASACDEIVADELSTVGSIGAMSIRPDIG 124

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             + K G+ ++++++   K    P+ ++  +  ++M+  +D     F+  V+++R +   
Sbjct: 125 ELMKKFGIEVETLRTGIYKGLGLPYEKLTEEERELMKKELDEIQDNFLNAVAKNRKLDDV 184

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           K   LS  +++ G EAK +GLID +GG+E   +        +  + +      +      
Sbjct: 185 KMKELSTAKVYLGREAKDMGLIDHLGGKELAIRIAKERSGIRKEKIVDYGERKRKGLLRR 244

Query: 263 LK 264
             
Sbjct: 245 AM 246


>gi|49475218|ref|YP_033259.1| protease sohB [Bartonella henselae str. Houston-1]
 gi|49238023|emb|CAF27229.1| Protease sohB [Bartonella henselae str. Houston-1]
          Length = 283

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 118/286 (41%), Gaps = 19/286 (6%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIER----------IERISRDDSATA 68
            +  +          +   +  + + G I DS   I R          +++      A A
Sbjct: 1   MVNFIKNFIPHRFYSSKTEIPVVRLHGAIIDSSSSIARTLSLGRCANLLDKAFAYKKAPA 60

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
           + V ++SPGGS      IF+ I+ +  + +K V+  + ++AAS GY+I+CA + I A  +
Sbjct: 61  VAVIINSPGGSPVQSRLIFKRIRDLAEEKKKQVLMFIEDIAASGGYMIACAGDEIFADPS 120

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           S+VGSIGV+         L K+G+  +   +   K    PF       ++ ++ +    +
Sbjct: 121 SIVGSIGVVSASFGFPELLKKIGIERRVYTAGKNKVTLDPFQPEKKTDIEHLKSLQLEVH 180

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
             F+ LV E R         +  G  W+G ++ ++GLID +     V +  +        
Sbjct: 181 KTFIDLVKERRAEKLSNDPNIFTGMFWSGKKSVELGLIDGLNDVRSVIKERFG-----DD 235

Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
            K++   PPK+ +     +   +  +   I        +   A+W 
Sbjct: 236 TKLRLIIPPKSLFGPKTPSGVTAHAVHTAIDSALMVAQER--ALWQ 279


>gi|52548349|gb|AAU82198.1| protease IV [uncultured archaeon GZfos11H11]
          Length = 251

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 111/239 (46%), Gaps = 12/239 (5%)

Query: 33  DNSPHVARIAIRGQIEDSQE----------LIERIERISRDDSATALIVSLSSPGGSAYA 82
             +  +A I I+G I   +           +I+ IE +        +I  ++SPGG+ +A
Sbjct: 7   KENGSIAIIPIKGMITSEESVFGLMAASTLIIKDIEEVENKRKIKTVIFEINSPGGTPFA 66

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            + I   I+ +   KP I  V E  AS  Y I+ A + IVA E S VGSIG +   P + 
Sbjct: 67  SKEIATCIENM--DKPAIAWVREYGASGAYWIASACDEIVADELSTVGSIGAMSIRPDIG 124

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             + K G+ ++++++   K    P+ +   +  ++M+  +D     F+  V+++R +   
Sbjct: 125 ELMKKFGIDVETLRTGIYKGMGLPYEKPTEEERELMKKELDEIQDNFLNAVAKNRKLDDA 184

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
           K   LS  +++ G EAK++GLID +GG+E   +        +  + +      +     
Sbjct: 185 KMKELSTAKVYLGREAKEMGLIDHLGGKELAIRIAKERSGIRKEKIVDYGERKRKGLLR 243


>gi|109898682|ref|YP_661937.1| signal peptide peptidase SppA, 67K type [Pseudoalteromonas
           atlantica T6c]
 gi|109700963|gb|ABG40883.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Pseudoalteromonas atlantica T6c]
          Length = 620

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 119/264 (45%), Gaps = 12/264 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSL 73
           +      H+      V  +  +G I                E + +   DDS  ++++ +
Sbjct: 317 IVNPPLPHLNTGIDKVGVVVAKGTILNGEQKPGTVGGDSTAELLRKARLDDSIKSVVLYV 376

Query: 74  SSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
            SPGGSA+A E I + I+ +K   KPV+  +   AAS GY IS +++ I AA +++ GSI
Sbjct: 377 DSPGGSAFASEIIRQEIENLKAAGKPVVALMSTYAASGGYWISASADEIWAAPSTITGSI 436

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           G+   +   +  LD LGV    V ++           ++PK  Q++Q  ++  Y  F+ L
Sbjct: 437 GIFGMFVSFENTLDYLGVHTDGVGTTDFAG-MGITRGIDPKMGQVLQRSIEHGYDQFISL 495

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKD 251
           V+E R++  +    ++ GR+W G  A K+ L+D +G  ++   +  A            +
Sbjct: 496 VAEERHMSKESVDNIAQGRVWIGETALKLNLVDHLGYIDDAVSAAAARANLSEYDVTYVE 555

Query: 252 WNPPKNYWFCDLKNLSISSLLEDT 275
            +   +  F      + S +L  T
Sbjct: 556 RSLNSSELFWKELFSNASVVLART 579



 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 93/286 (32%), Gaps = 37/286 (12%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------- 50
           + F  K       ++  + +  ++F  +  +         + I+G I             
Sbjct: 19  LNFSRKLFFNLIFLVIAIGIISLFFRDNGQIGVKQDSALVLNIKGDIVIQKHAIDPFEAF 78

Query: 51  ----------------QELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93
                           Q+++  ++   +D    AL++ L    G      E + +AI   
Sbjct: 79  MQEALGQANEKPEVLLQDILLTLDNAKQDRRIKALVLDLHELSGAGLDKLEQVAQAIDDF 138

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K  +  +  + +      Y I+  ++ +       +   G      Y K  L+K+  +  
Sbjct: 139 KLSEKPVYAIGDYYTQEQYYIASHADHVYMNPMGWMLFEGYGRFGMYYKSALEKIKATTH 198

Query: 154 SVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV----- 206
             K    K+   P    +++  A +  +  ++  +  +   V+E+R +  D         
Sbjct: 199 VFKVGTYKSAVEPLLRDDMSQPAKEANKAWLNGMWSQYKNSVAEARGLSTDNFDEKVDEF 258

Query: 207 ---LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
                D        A   G +D +  +E+V Q L ++       K+
Sbjct: 259 MVKFEDANGDFAQYALDNGWVDGLKTREQVLQELVSVVGKDEDAKL 304


>gi|149912749|ref|ZP_01901283.1| peptidase S49 [Roseobacter sp. AzwK-3b]
 gi|149813155|gb|EDM72981.1| peptidase S49 [Roseobacter sp. AzwK-3b]
          Length = 265

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/258 (24%), Positives = 106/258 (41%), Gaps = 19/258 (7%)

Query: 35  SPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
            P V+ I + G I          + L   IE+  R     A+ + ++SPGGS      I 
Sbjct: 11  GPVVSVIRLSGTIGAGSRAQLSDEALAPSIEKAFRRGKPKAVALLINSPGGSPVQSSLIA 70

Query: 88  RAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
             I+++   K  PV   V ++AAS GY ++ A++ I     S+VGSIGV+         L
Sbjct: 71  SRIRRLAEEKDIPVHAFVEDVAASGGYWLATAADDIWVDPASIVGSIGVISAGFGAPVLL 130

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            + GV  +   S   K+   PF     + V  ++D+++  +  F   V+  R     +  
Sbjct: 131 ARQGVERRVHTSGKSKSFLDPFLPQKDEDVSRLKDILEQMHKVFEAQVTSRRGDKLAQND 190

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L  G  W G  A ++GL+D +G      + LY         +   +   +  +      
Sbjct: 191 DLFTGEFWLGQRAVELGLVDGIGHVAPKMKELYG-----DKVRFAQYGRKRGLFQRFGM- 244

Query: 266 LSISSLLEDTIPLMKQTK 283
               SL +D I  +++  
Sbjct: 245 ----SLAQDGIAAIEERA 258


>gi|296329047|ref|ZP_06871553.1| signal peptide peptidase SppA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296153851|gb|EFG94663.1| signal peptide peptidase SppA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 589

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 14/236 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLS 74
              + D++  V  I + G I +SQ             E +E++     ++   A+++ ++
Sbjct: 306 EGSMVDSNNIVYVIPLEGDIVESQTEVFSGEENINVSETLEKLNIAKENNKVKAVVLRVN 365

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGGSA   + I + ++++   KPV   +  +AAS GY IS  ++ I     ++ GSIGV
Sbjct: 366 SPGGSALTSDIIAKKVKELAEEKPVYVSMSSVAASGGYYISTNAHKIFVDRNTITGSIGV 425

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +   P     +   GV+I+ +         S  S    K    + +     Y  F+ +VS
Sbjct: 426 VSILPDFSKLITDNGVNIEKISDGEYSDLYSADS-FTEKKYNKIYNSNLKVYEDFLSVVS 484

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
           + R I  +K   +++GRIWTG EA K+GL D +GG  E   ++           + 
Sbjct: 485 KGRRIDKEKLKTIAEGRIWTGDEAIKIGLADEIGGLNETIYAIAEDNNMDEYGIVI 540



 Score = 66.6 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 101/281 (35%), Gaps = 32/281 (11%)

Query: 3   FVLKKI-------KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARI----------AIRG 45
           FV+K+I            ++ ++    +                 +           ++ 
Sbjct: 24  FVIKEILSFFIKLFLFLFVVGIIISAAIKSFEEKPTVAIKNKAYVLINLADSYNERLLKS 83

Query: 46  QIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPV 99
            + +   +     ++ IE IS DD    +I+ L+    S    E +   I   +   K +
Sbjct: 84  NLFEDDSINFYTLLQSIEAISYDDRVEGIILKLNGDSLSYAQSEELAHEISMARAANKKI 143

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF-QYPYVKPFLDKLGVSIKSVKSS 158
           I     +     YL S A+ I + +  S   +I   F +  Y+K   DK GV    +   
Sbjct: 144 IAYFENVGRKNYYLASYANEIYMPSANSTNVNIYPYFKENFYIKGLADKFGVKFNIIHVG 203

Query: 159 PMKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTG 215
             K+       + ++ +A +    V+D +Y+ F+ +VS +R I  +     + DG +   
Sbjct: 204 DYKSYMENLASNTMSKEAKEDTVRVLDKNYNNFLDVVSLNRKINREDLDKIIKDGELVAA 263

Query: 216 AEA--KKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           + A      LID     + V   +   G    I  I+++  
Sbjct: 264 SSADLMNNNLIDKYVYWDNVISMV---GGKDKIITIQEYAK 301


>gi|269123729|ref|YP_003306306.1| signal peptide peptidase SppA, 36K type [Streptobacillus
           moniliformis DSM 12112]
 gi|268315055|gb|ACZ01429.1| signal peptide peptidase SppA, 36K type [Streptobacillus
           moniliformis DSM 12112]
          Length = 547

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 114/241 (47%), Gaps = 13/241 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIED-SQELIERI---------ERISRDDSATALIVSLSSPGG 78
             +  +S  +A I + G+I + S   +  I         E+  +      +++ ++SPGG
Sbjct: 257 KEINTSSNKIAVIYLDGEITEKSNSTVPYISYSNFEQKFEKAEKTKGIKGIVIRINSPGG 316

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           SA   + I+  I+K  +  PV   +  +AAS GY IS A N I    +SL GSIGV+   
Sbjct: 317 SAIEAKQIYNRIRK--SEVPVYISIGNIAASGGYYISSAGNKIFINPSSLTGSIGVVSIM 374

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV-SESR 197
           P     L+KLG++I  V+        SP+ ++  +   + Q  ++S Y  F   +   ++
Sbjct: 375 PKYSAALNKLGINIDGVEKGKYSNLLSPYKDLTDEERNIYQRKLESIYSEFKNDILKNNK 434

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
            +  +    ++ G+IW G+EA K+ L++  GG ++   +L       +   I +    KN
Sbjct: 435 KLTSESLEEVAQGKIWLGSEAIKLNLVNEFGGLQDTINALQEDLKLDNNYNIVNIYSEKN 494

Query: 258 Y 258
           Y
Sbjct: 495 Y 495



 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 14/266 (5%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPG 77
           + ++ ++        ++  ++      G+     E+   +  I+ DD    + + L +  
Sbjct: 17  ILISDIFIPSDDKFTNSIKYI-----EGKNITFSEVYTSLNMIASDDKIQKIFIDLDTTA 71

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA--AETSLVGSIGVL 135
            +A   E +   + K+K     I        +  Y I+  ++ I+    + + +   G  
Sbjct: 72  FTASQLEELEPVLNKIKLSNKKIYAYGSEINNTNYGIATYADEIIVPETQNANIVLTGYS 131

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
            +  Y K   DK G  ++ +     K+  +    + ++ +  + +  ++D     F+   
Sbjct: 132 NKSMYYKDLFDKYGFKMEVIHVGSHKSFGQNYTRNSISAEEKETLTRILDKRLEQFIEKN 191

Query: 194 SESRNIPYDK-TLVLSDGR--IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
           + +R I  +     L  G     +  +A+ + L+D +   +++ + +     D +   ++
Sbjct: 192 ANARKIKPEIFKEKLLKGEYAYISPEKARDLDLVDQIIFYDDLAKKI--DLKDDNTISLQ 249

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTI 276
           +++  K        N      L+  I
Sbjct: 250 NYSEKKIKEINTSSNKIAVIYLDGEI 275


>gi|325660920|ref|ZP_08149547.1| hypothetical protein HMPREF0490_00279 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472427|gb|EGC75638.1| hypothetical protein HMPREF0490_00279 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 339

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/284 (23%), Positives = 122/284 (42%), Gaps = 21/284 (7%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDS---------------QELIERIERISRDDSAT 67
                ++      P++  +A+ G I++                   ++ I+R+  D+   
Sbjct: 54  ALLGGNTTTLPGEPYIGIVAVEGTIQEQTSSNGIFDTVAGYQHDTTLDYIDRMMEDEKNQ 113

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAE 125
            +++ + SPGG+ Y  E ++R +   K    +PV T +   AAS GY IS  S+ I A  
Sbjct: 114 GILLRVDSPGGTVYESEELYRKLVAYKEETGRPVWTYMEHYAASGGYYISAPSDKIYANP 173

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
            +  GSIGV+     +    +KLG+   S+ S   K      S++  + + + Q  VD S
Sbjct: 174 NTTTGSIGVIMSGYDMSGLYEKLGIRSVSITSGKNKD----MSKLTEEQIAIYQSSVDES 229

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           +  FV +V++ R +  +    ++DGR +T  +AK  GLID +   EE+ +++       +
Sbjct: 230 FDRFVEIVADGRKMTEETVREIADGRTYTAKQAKANGLIDEISLYEEMQEAMEQETGCTT 289

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
             + +    P    F  L+ L   S  E      +      L  
Sbjct: 290 FYEPEQGVSPLASLFSKLETLKPKSEAEVLTEWNEDLGSGVLMY 333


>gi|154251181|ref|YP_001412005.1| peptidase S49 [Parvibaculum lavamentivorans DS-1]
 gi|154155131|gb|ABS62348.1| peptidase S49 [Parvibaculum lavamentivorans DS-1]
          Length = 300

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/275 (24%), Positives = 116/275 (42%), Gaps = 18/275 (6%)

Query: 33  DNSPHVARIAIRGQIEDSQELIERIE---------RISRDDSATALIVSLSSPGGSAYAG 83
           +  P VA + + G I  SQ L   +                +  A+ + ++SPGGS    
Sbjct: 22  EPKPVVAVVRLSGTIGPSQPLRGGLNLAAVAAPLEAAFSMRNVKAVALLINSPGGSPVQS 81

Query: 84  EAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
             I++ I+ +   K  PV     ++AAS GY+I+CA++ I A E+S+VGSIGV+      
Sbjct: 82  SLIYKRIRALAEEKSVPVYAFAEDVAASGGYMIACAADEIYADESSIVGSIGVVSAGFGF 141

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              ++KLGV  +   +   KA   PF     + V+ ++ +    +  F +LV  +R    
Sbjct: 142 TGLIEKLGVERRVHTAGESKAMLDPFQPEREEDVRRLEALQLDVHENFKKLVRGARGERL 201

Query: 202 DKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD--WNP---- 254
                 +  G  W G  A + GLID +G      +SL+   V   +   +   W P    
Sbjct: 202 KADDPAIFSGEFWAGQGAVERGLIDGLGDVRSKMRSLFGENVKLRLVSPRTPWWRPGGGI 261

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
             + +    +        +    L+   + + LW+
Sbjct: 262 ASSRFGGLSEGFGAGFASQIGEGLIAAAERRSLWS 296


>gi|77464657|ref|YP_354161.1| S49 family peptidase [Rhodobacter sphaeroides 2.4.1]
 gi|77389075|gb|ABA80260.1| Peptidase family S49 [Rhodobacter sphaeroides 2.4.1]
          Length = 265

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 110/258 (42%), Gaps = 14/258 (5%)

Query: 34  NSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             P V  I ++G I          Q L   IE+  R      + + ++SPGGS      I
Sbjct: 10  KDPVVPVIRLQGVIASGPRGGLSDQGLAAVIEKAFRRGKPAGVALVINSPGGSPVQSSLI 69

Query: 87  FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
              I+++ + K   V   V ++AAS GY ++CA + I   E+SLVGSIGV+F       F
Sbjct: 70  AARIRRLASEKGVRVHAFVEDVAASGGYWLACAGDEIWVDESSLVGSIGVIFSSFGFHEF 129

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           + + G+  +   +   K+   PF    P+ V+ ++ + +  +  F+  V   R    D  
Sbjct: 130 MARNGIERRVHTAGRSKSLADPFLPEKPEDVERLKALQEPIHRAFIEYVKRHRGTRLDLN 189

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             L +  +WTG EA ++GL D V         L     D+   ++  +   + +      
Sbjct: 190 ADLFNADVWTGQEAVRLGLADGVAHL---VPKLQENYGDK--VRLVPYGQRRPFLQRLGM 244

Query: 265 NLSISSLLEDTIPLMKQT 282
           +L+  +L E     +   
Sbjct: 245 SLAGQALAEVENRALWAR 262


>gi|83593953|ref|YP_427705.1| peptidase S49 [Rhodospirillum rubrum ATCC 11170]
 gi|83576867|gb|ABC23418.1| Peptidase S49 [Rhodospirillum rubrum ATCC 11170]
          Length = 593

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 111/266 (41%), Gaps = 17/266 (6%)

Query: 39  ARIAIRGQIE--------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           A IA  G I               D++ L   I+    D    A+++ + SPGGS    +
Sbjct: 302 ALIAASGPIVTGDGKVSPFDGKEIDARALAATIDSAVDDAGVAAIVLRIDSPGGSYVGSD 361

Query: 85  AIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
            ++RA+ + +    PVI  + ++AAS GY ++  +N IVA   +L GSIGV+     +  
Sbjct: 362 LVWRAVSRARQHGLPVIASMGDVAASGGYYMAMGANKIVAQPGTLTGSIGVVAGKFTIAK 421

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
             + LG++   V++    A  S     +    + M  ++D+ Y  F    +  R +  + 
Sbjct: 422 ASEDLGIAWGGVEAGRNAALFSLTDPFDEAGQRRMDQILDAIYADFTGKAAAGRGLSPEA 481

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
               + GR+WTG +A   GL+D +GG +   +             +     PK      L
Sbjct: 482 IEEAARGRVWTGEDALAHGLVDALGGLQTAIELARTEAGLDPHAPLAITVYPKREGPEWL 541

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289
               +S+     +  ++     GL +
Sbjct: 542 LRALMSAEQIGGVRSVRAAL--GLVS 565



 Score = 96.6 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 98/289 (33%), Gaps = 33/289 (11%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVY-----FSWSSHVEDNSPHVARIAI------------ 43
           M F+ K +   + ++ ++   ++       S     ++  P    + +            
Sbjct: 1   MRFIGKALLVVFAVVGILASVLIVSGAVALSSFIGKDEPLPTKLVLDLDASGSFSEDGGA 60

Query: 44  ---------RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
                     G+    + + E +   + D +   L+V +          + + +AI   +
Sbjct: 61  LPGLGFLSGEGERPSLRAVTEGLIAAASDPTVKGLMVRIGEGSLGMAQAQELRQAILAFR 120

Query: 95  NRKPVITEVHEMAASA-----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
                     E           Y ++ A   +    + ++G+ G   + P+V+  LD LG
Sbjct: 121 ASGKPSIAYAETIGEFGQGTVPYYLASAVEDVWLQPSGMLGTTGFAVRMPFVRKLLDDLG 180

Query: 150 VSIKSVKSSPMKAE--PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
           +  + +     K     +    ++P        +V       VR V+E+R +  D+   L
Sbjct: 181 ILPQFIARKEFKDAAATATQYGMSPAQEISFGALVQGWSGQVVRAVAEARGLSEDQVRGL 240

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
            D      AEA + GLID +G  +E  +++           +  +   +
Sbjct: 241 IDRSPLLAAEALESGLIDRLGYPDEARKAMGERAGTDEHLSVGQYAERQ 289


>gi|126734017|ref|ZP_01749764.1| peptidase, family S49, putative [Roseobacter sp. CCS2]
 gi|126716883|gb|EBA13747.1| peptidase, family S49, putative [Roseobacter sp. CCS2]
          Length = 264

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 107/259 (41%), Gaps = 18/259 (6%)

Query: 33  DNSPHVARIAIRGQIE------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
            + P VA I ++G I       D+  L   IE+        A+ + ++ PGGS      I
Sbjct: 9   KSEPFVAVIRLQGAIANSGRGLDNPGLAPVIEKAFSKGKPAAVALEINCPGGSPVQSSLI 68

Query: 87  FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
              I+++ + K  PV   V ++AAS GY ++CA++ I     S+ GSIGV+         
Sbjct: 69  ASRIRRLADEKKIPVFAFVEDVAASGGYWLACAADEIFIDSCSITGSIGVISAGFGATEA 128

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           +DK+GV  +   +   K+   PF    P  V+ ++  ++  +  F+  V   R       
Sbjct: 129 IDKIGVERRVHTAGKSKSMMDPFKPEKPADVKKLKGWLEDLHATFIDYVKSRRGTKLSDN 188

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             L  G ++ G +    GL D +G    V +  +         + + +   K        
Sbjct: 189 PDLFTGEVYIGQKGIDEGLADGIGHLAPVMKERFG-----DKVQFRRYGQKKPLLARF-- 241

Query: 265 NLSISSLLEDTIPLMKQTK 283
               + +++D +  +++  
Sbjct: 242 ---GAQIVDDAVAGIEERA 257


>gi|329897050|ref|ZP_08271822.1| protease IV, a signal peptide peptidase [gamma proteobacterium
           IMCC3088]
 gi|328921490|gb|EGG28876.1| protease IV, a signal peptide peptidase [gamma proteobacterium
           IMCC3088]
          Length = 604

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 60/265 (22%), Positives = 116/265 (43%), Gaps = 12/265 (4%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATA 68
           +++           E +   VA + ++G I           + ++   +      DS  A
Sbjct: 303 ISMAEYASLTQDAPEQHENAVAVVFVQGGIQEGPQGPGVAGADDIANLLRTAYSKDSTKA 362

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ ++SPGGS  A E I   +   + +  PV+  + ++AAS G  +S +++ I A  T+
Sbjct: 363 IVLRVNSPGGSIIASEMIRDEVSAAQRKGIPVVVSMGDVAASGGVWVSMSADKIYAEPTT 422

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           + GSIGV   +P  +  +D  G++   V ++      SP   ++     +      ++Y 
Sbjct: 423 ISGSIGVAVAFPTFERVMDWAGINFDGVTTAEN-TGWSPVLPMSDALDALFARWASTAYD 481

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            FV LV+E RN   D    ++ GR+W G+ A+++GL+D +G  E    +   L   +   
Sbjct: 482 RFVNLVAEGRNKEPDYIRSIAGGRVWIGSMAQELGLVDAMGDLEAAITAAAELAQLED-H 540

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLL 272
            +       +     LK L     +
Sbjct: 541 SVDYVTKKPSKAMMILKELQGGIGV 565



 Score = 73.5 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 93/285 (32%), Gaps = 34/285 (11%)

Query: 2   EFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------- 51
            FVL  I    ++++L++  V               V  IA +G + D +          
Sbjct: 18  GFVLNLITFA-IVIALISGVVQSIFDRPEEPTADGKVLMIAPKGLVLDQETFPDELEFPF 76

Query: 52  -----------ELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPV 99
                      +L+  + R + D S  A+ +  S  G        A+ + +  +++    
Sbjct: 77  NVSDVEQIQTRDLVALLRRAAEDSSLAAVSIDFSETGFAGPTTALAVAKELSALRDTGKP 136

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
           I        +  YL++  ++ +       +   G+     Y +   DKL +++ +     
Sbjct: 137 IIAYSRALGTGSYLMASQADEVFVHPAGALSVSGLGGYRDYTRDLTDKLRINVHNYSQGD 196

Query: 160 MKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR--IWTG 215
            K+        +++    Q   +++   +      ++  R++       ++D       G
Sbjct: 197 YKSATEGLTRRDMSDADRQQRTELLQPIWQEMKARMAAGRDVDASVIQDMADNYSVPLLG 256

Query: 216 A-------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
                   +A+ +GLID      E  + +       S      + 
Sbjct: 257 EAGYHNLAQAEAMGLIDGTMNFPEYREYMMERFGKISKDGRDTYP 301


>gi|51473588|ref|YP_067345.1| protease [Rickettsia typhi str. Wilmington]
 gi|51459900|gb|AAU03863.1| probable protease [Rickettsia typhi str. Wilmington]
          Length = 304

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 67/265 (25%), Positives = 117/265 (44%), Gaps = 18/265 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPG 77
           ++S   D+   VA + + G I            + L E IE+  +     AL + ++SPG
Sbjct: 30  FASVFGDSKEVVAVLRLSGVIGKVSTVQSGLTLESLNELIEKAFKIKKLKALCLIINSPG 89

Query: 78  GSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           GS    E I + I+ +  KN+  V + + +MAAS GY ++C+ + I A  +S++GSIGV+
Sbjct: 90  GSPVQSELIAKRIRDLAKKNKIKVYSFIEDMAASGGYWLACSGDKIYALPSSVIGSIGVI 149

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                    ++KLG+  +       KA   PF  +N   +++++D+    Y  F+  V E
Sbjct: 150 SSGFGFHEAINKLGIERRVYTEGKNKAVLDPFKPINKDDLKIIKDLQKQVYEHFIEYVKE 209

Query: 196 SRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
            R     +   +  +G  W G  A   GLID +G    V +  +   +         +  
Sbjct: 210 RRAGKLTQQDEILFNGEFWAGQTALDYGLIDGIGDMYSVMKEKFGDNIKF------QYLC 263

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLM 279
            K  W      +    L+ED +  +
Sbjct: 264 AKQPWLKKKLGMGSKVLIEDLVNTV 288


>gi|163852521|ref|YP_001640564.1| peptidase S49 [Methylobacterium extorquens PA1]
 gi|163664126|gb|ABY31493.1| peptidase S49 [Methylobacterium extorquens PA1]
          Length = 286

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 69/273 (25%), Positives = 117/273 (42%), Gaps = 19/273 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSA 80
              +  P VA + + G I     +            +ER       +A+ + ++SPGGS 
Sbjct: 16  RFRETPPRVAVVRLSGAIGAVSPIRAGLSIGTVAPSLERAFTMPGLSAVALVINSPGGSP 75

Query: 81  YAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
                I+R I+ +   K +     V + AAS GY+I+CA++ IVA   SLVGSIGV+   
Sbjct: 76  VQSHLIYRRIRALAAEKEIKVFAFVEDAAASGGYMIACAADEIVADPASLVGSIGVVSAG 135

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                 ++++G+  +       KA   PF   NP  +  ++++       F  LV E R 
Sbjct: 136 FGFDRLIERIGIERRVHTQGEAKAMLDPFRPENPLDIARLKEIQADVQALFSGLVRERR- 194

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              D +  L  G +WTG +A ++GL+D +G      ++ Y   VD     ++     +  
Sbjct: 195 PTLDASRDLFTGAVWTGRQALELGLVDAIGDLRGTLRARYGEKVD-----LRLVAENRGS 249

Query: 259 WFCDLKNLSISSLLEDTIP--LMKQTKVQGLWA 289
           W   L   +        +P  L+   + +  WA
Sbjct: 250 WLARLLRRAGPGQTAAGLPDALIAAVEERAAWA 282


>gi|23306358|gb|AAN17406.1| Unknown protein [Arabidopsis thaliana]
 gi|28058917|gb|AAO29968.1| Unknown protein [Arabidopsis thaliana]
          Length = 388

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 67/264 (25%), Positives = 116/264 (43%), Gaps = 16/264 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSL 73
           W+  +      +A I   G I               +++LIE+I  +       A I+ +
Sbjct: 76  WTLGLTGGRDQIAIIRAGGSISRVKGPLSTPGSAIIAEQLIEKIRSVRESKKYKAAIIRI 135

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
            SPGG A A + ++R I+ +   KPVI  + ++AAS GY ++ A+N IVA   +L GSIG
Sbjct: 136 DSPGGDALASDLMWREIKLLAETKPVIASMSDVAASGGYYMAMAANAIVAENLTLTGSIG 195

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-SEVNPKAVQMMQDVVDSSYHWFVRL 192
           V+     +    +K+G + +++               + P+  ++ +     +Y  F   
Sbjct: 196 VVTARFTLAKLYEKIGFNKETISRGKYAELLGAEERPLKPEEAELFEKSAQHAYQLFRDK 255

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--K 250
            + SR++P DK   ++ GR+WTG +A   GLID VGG                 +K+   
Sbjct: 256 AALSRSMPVDKMEEVAQGRVWTGKDAHSRGLIDAVGGLSRAIAIAKQKANIPLNKKVTLV 315

Query: 251 DWNPPKNYWFCDLKNLSISSLLED 274
           + + P       L  +  S +  D
Sbjct: 316 ELSRPSTSLPDILSGIGSSVIGVD 339



 Score = 39.6 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 21/59 (35%)

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
               +      +  ++   + K+ GLI  +   +EV   L      +  +K+   +  K
Sbjct: 11  GKKREDVENFINQGVYEIEKLKEAGLIKDIRYDDEVITMLKERLGVEKDKKLPTVDYKK 69


>gi|163761019|ref|ZP_02168097.1| proteinase sohB [Hoeflea phototrophica DFL-43]
 gi|162281800|gb|EDQ32093.1| proteinase sohB [Hoeflea phototrophica DFL-43]
          Length = 285

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 121/268 (45%), Gaps = 20/268 (7%)

Query: 38  VARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           +  + + G I           +       + R   D  A A+ + ++SPGGS      I+
Sbjct: 19  IPVVRLSGAIMAGGNQFRQNLNLATAAPLLARAFADKQAPAVAIMINSPGGSPVQSRLIY 78

Query: 88  RAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           + I+ +  +  K V+  V ++AAS GY+I+CA + I+A  +S+VGSIGV+         +
Sbjct: 79  KRIRDLAEEKDKKVLMFVEDVAASGGYMIACAGDEIIADPSSVVGSIGVISAGFGFTGLI 138

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           DK+GV  +   +   K+   PF   NP+ +  ++++    +  F+ LV +SR        
Sbjct: 139 DKIGVERRVYTAGENKSLLDPFKPENPEDIAYLKELQLDIHKVFIDLVKDSRGARLKDDP 198

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            +  GR WTG   K++GL+D +G      ++ Y         K++   P +  +   +  
Sbjct: 199 DMFTGRFWTGQRGKELGLVDDLGDLRATLRARYG-----DKVKMRLIAPQRGLFGRKVPG 253

Query: 266 LSISSLLEDTIPLMKQTKVQGL--WAVW 291
           ++      + +  + +  +  +   A+W
Sbjct: 254 VATG-FAANALAGVAEAGLNAIDERALW 280


>gi|85373032|ref|YP_457094.1| periplasmic serine protease [Erythrobacter litoralis HTCC2594]
 gi|84786115|gb|ABC62297.1| periplasmic serine protease [Erythrobacter litoralis HTCC2594]
          Length = 626

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 62/261 (23%), Positives = 117/261 (44%), Gaps = 9/261 (3%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDSQ--------ELIERIERISRDDSATALIVSLSS 75
            +   +  + +   +  + + G+I D +        + I  +   +  D    LIV + S
Sbjct: 300 AWLSDNARDTSGSAIGVVTVAGEIVDGEAGPGTAGGDRIAELLDAALSDDLAGLIVRVDS 359

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVI-TEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           PGGS  A EAI  A+ + K +   I   +  +AAS GY +S  ++ I A   ++ GSIG+
Sbjct: 360 PGGSVLASEAIRDAVLRHKAKGIPIAVSMANVAASGGYWVSTPADRIFAEPETITGSIGI 419

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
               P  +    + GV+   V ++ +  +P   +   P+   ++Q  ++  Y  F+  VS
Sbjct: 420 FAVIPTFENLAAEYGVNADGVATTSLSGQPDLIAGFTPEVDAILQSSIEDGYRDFLTRVS 479

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           E+R +P ++   +  GR+W G  A+++GL+D  GG EE    + A    +       +  
Sbjct: 480 EARKLPMERVDAIGQGRVWDGGTARQIGLVDQYGGLEEALDWVAAQAELEEGDWHVRFLG 539

Query: 255 PKNYWFCDLKNLSISSLLEDT 275
            +   F +L    + +  E  
Sbjct: 540 NEQQPFDNLLRTMLLTDSESA 560



 Score = 66.6 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 81/209 (38%), Gaps = 9/209 (4%)

Query: 49  DSQELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
           D+Q+L+  I+  + DD   A+++      GG     + I  A+Q+ ++ +  +       
Sbjct: 80  DAQDLVHAIDAATGDDRIKAIVLDLTGFLGGGHVHLQDIGEALQRARDAEKPVLTYGIGY 139

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
                +++  ++ +           G      Y   FL+ L ++ +  K    K+   PF
Sbjct: 140 GDDAMMLAAHASEVWLDPLGGAIIAGPGGNRLYFGQFLEDLNINARIYKVGTYKSAVEPF 199

Query: 168 S--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAK------ 219
              +++P+A +  Q +  + +  +   V ++R      T+  S       ++        
Sbjct: 200 DRSDMSPEARENAQALYGALWEEWQAKVKKARPAIDLDTVTGSPAEWVAASQGDLAQAAL 259

Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
             GL+D +G + E  + +  +  +    +
Sbjct: 260 AAGLVDTLGSRVEFGERVAEIAGEDDWEE 288


>gi|240139855|ref|YP_002964332.1| protease SohB, belong to MEROPS peptidase family S49 (protease IV
           family, clan S-) [Methylobacterium extorquens AM1]
 gi|240009829|gb|ACS41055.1| protease SohB, belong to MEROPS peptidase family S49 (protease IV
           family, clan S-) [Methylobacterium extorquens AM1]
          Length = 286

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 69/273 (25%), Positives = 117/273 (42%), Gaps = 19/273 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSA 80
              +  P VA + + G I     +            +ER       +A+ + ++SPGGS 
Sbjct: 16  RFRETPPRVAVVRLSGAIGAVSPIRPGLSIGTVAPSLERAFTMPGLSAVALVINSPGGSP 75

Query: 81  YAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
                I+R I+ +   K +     V + AAS GY+I+CA++ IVA   SLVGSIGV+   
Sbjct: 76  VQSHLIYRRIRALAAEKEIKVFAFVEDAAASGGYMIACAADEIVADPASLVGSIGVVSAG 135

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                 ++++G+  +       KA   PF   NP+ +  ++++       F  LV E R 
Sbjct: 136 FGFDRLIERIGIERRVHTQGEAKAMLDPFRPENPQDIARLKEIQADVQALFSGLVRERR- 194

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              D +  L  G +WTG +A  +GL+D +G      ++ Y   VD     ++     +  
Sbjct: 195 PTLDASRDLFTGAVWTGRQALDLGLVDALGDLRGTLRARYGEKVD-----LRLVAENRGS 249

Query: 259 WFCDLKNLSISSLLEDTIP--LMKQTKVQGLWA 289
           W   L   +        +P  L+   + +  WA
Sbjct: 250 WLARLLRRAGPGQTAACLPDALIAAVEERAAWA 282


>gi|268323790|emb|CBH37378.1| putative protease, peptidase S49 family [uncultured archaeon]
          Length = 251

 Score =  113 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 111/239 (46%), Gaps = 12/239 (5%)

Query: 33  DNSPHVARIAIRGQIEDSQE----------LIERIERISRDDSATALIVSLSSPGGSAYA 82
                +A I I+G I   +           LI+ IE         A+I  ++SPGG+ +A
Sbjct: 7   KEKGSIAIIPIKGMITSEESVFGLMAASTVLIKDIEEAENKRKIKAVIFEINSPGGTPFA 66

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            + I   I+K+   KP I  V E AAS  Y I+ A + IVA E S VGSIG +   P + 
Sbjct: 67  SKEIATCIEKM--DKPAIAWVREYAASGAYWIASACDEIVADELSTVGSIGAMSIRPDIG 124

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             + K G+ I+++++   K    P+ +   +  ++++  +D     F+  V+++R +   
Sbjct: 125 ELMKKFGIDIETLRTGSYKGLGLPYEKPTEEERELLKKELDEIQDNFLNAVAKNRKLDDA 184

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
           K   LS  +++ G EAK +GLID +GG+E   +        +  R +      +     
Sbjct: 185 KMKELSSAKVYLGREAKDMGLIDHLGGKELAIRIAKERSGIRKERIVDYGERKRKGLLR 243


>gi|77360352|ref|YP_339927.1| protease IV, a signal peptide peptidase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875263|emb|CAI86484.1| protease IV, a signal peptide peptidase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 621

 Score =  113 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 73/252 (28%), Positives = 127/252 (50%), Gaps = 14/252 (5%)

Query: 36  PHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             VA +  RG I D +              +     DD   A+++ + S GGS +A E I
Sbjct: 323 EKVAVVVARGTIVDGERKAGEIGGDSTAALLRNARLDDKVKAVVLRIDSGGGSMFASEVI 382

Query: 87  FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
              +  +K   KPVI  +  +AAS GY I+ A+N I AA +++ GSIGV   +   +  L
Sbjct: 383 RAEVLALKAAGKPVIASMSSVAASGGYWIASAANEIWAAPSTITGSIGVFGTFMTFENTL 442

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
             LGV    V ++ M    S    ++ K  Q++Q  V+ +Y  F+ +V+++RN+  ++  
Sbjct: 443 SNLGVYSDGVATTDMAG-FSITRPLDDKMAQVIQMSVEEAYGRFLDVVADARNMTPEQVD 501

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKD-WNPPKNYWFCD 262
            ++ GR+W  A+A+++GLID +G +++  ++  AL       ++ IK   +P +      
Sbjct: 502 NIAQGRVWIAAKAQELGLIDKLGDKQDAIKAAAALAKLNHYDVKTIKQSLSPQQKMIQDI 561

Query: 263 LKNLSISSLLED 274
           L N S+ S+L  
Sbjct: 562 LGNASVKSMLGS 573



 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/320 (14%), Positives = 102/320 (31%), Gaps = 37/320 (11%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------- 50
           + F  + I     +L ++   V   S    +   +  V R+ + G I +           
Sbjct: 13  INFSRRLILNILFLLLVIVFIVSLSSDGDKIIVENGSVLRLNLNGPIVEEKTYIDPIEAA 72

Query: 51  ----------------QELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93
                            +++E I   ++DD  + +++ L   P       + I +A++  
Sbjct: 73  ISDATSNAESPGEILLDDIVEVINEAAKDDRISVILLDLQEMPKAHLNKLKQITKALEAF 132

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K     +         A Y I+  ++ +       V   G      Y K  L+KL V+  
Sbjct: 133 KQTGKKVIASGYYYTQAQYYIAAHADEVAMHPYGSVAIEGFGMYPLYFKEALEKLKVTQH 192

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-- 209
             +    K+   PF  ++++  A +  +  + + ++ + + V+  R           D  
Sbjct: 193 IFRVGTFKSAVEPFIRNDMSDAAKEANRVWLTALWNEYKQDVAAVRPFDESNFDETMDVF 252

Query: 210 ------GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
                      G  A     +D +   ++V Q L  L       K       + Y     
Sbjct: 253 LAKMTAANGDAGQYALDNQWVDTLKTNQQVRQQLIDLVGADEKGKTFKQVSFRQYLSLVK 312

Query: 264 KNLSISSLLEDTIPLMKQTK 283
             +   + + + + ++    
Sbjct: 313 PPVVFDNPMTEKVAVVVARG 332


>gi|315230248|ref|YP_004070684.1| protease IV [Thermococcus barophilus MP]
 gi|315183276|gb|ADT83461.1| protease IV [Thermococcus barophilus MP]
          Length = 338

 Score =  113 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 121/233 (51%), Gaps = 3/233 (1%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
                  +  +A + I G I+++   +++ +I +I  ++S   +++ + SPGG       
Sbjct: 86  EKQPAKANTTIAILPIMGPIDENMALDVVSKIRQIKENESIGGVLLWIESPGGYVGPVRV 145

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I++ ++K+   KPV+      A S GY I+CA++ I+A   + VGSIGVL+ +  ++ + 
Sbjct: 146 IYKELKKLSYSKPVVAYTGGYADSGGYFIACAADKIIADPLAEVGSIGVLYVHYDLEQYY 205

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            + G+ +   K+   K   + + ++ P+  +M+++++D+ +  F+++VSE R++  + T 
Sbjct: 206 AQNGIKVNVFKTGKYKDMGAEWRDLTPEEREMIKNIIDTYFQDFLQVVSEGRHLDMNTTK 265

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
             + G+ W   + K + L+D  G  +   + L  L   +S + +       ++
Sbjct: 266 KYATGQTWFATDVKGI-LVDDTGDLDYAIKVLEQLMNVKSAKVVLYSAQKTDF 317


>gi|237739508|ref|ZP_04569989.1| protease IV [Fusobacterium sp. 2_1_31]
 gi|229423116|gb|EEO38163.1| protease IV [Fusobacterium sp. 2_1_31]
          Length = 588

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 114/267 (42%), Gaps = 23/267 (8%)

Query: 32  EDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLSSPGG 78
           +D+   V  I + G I +SQ             E I ++     +    A+++ ++SPGG
Sbjct: 309 DDSDNIVYVIPLEGDIVESQTEIFSGEANINVNETIAKLNTAKENKKIKAVVLRVNSPGG 368

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           SA   + I   ++++ + KPV   +  +AAS GY IS  +N I     ++ GS+GV+   
Sbjct: 369 SALTSDIIAEKVKELASEKPVYVSMSSVAASGGYYISANANKIYVDRNTVTGSVGVVSVL 428

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                 L   GV+++ +         S  +    K    + +     Y  F+ +VS+ R 
Sbjct: 429 VDYSSLLKDNGVNVEKISEGEYSDLYSVDT-FTEKKYNKIYNSNLKVYEDFLNVVSKGRK 487

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK-------- 250
           I  +K   L++GR+WTG EA K GL D +GG      ++           +         
Sbjct: 488 IDKEKLKELAEGRVWTGTEAVKNGLADEIGGLYSTIYAITDDNNIDDYTVVLAKDKVEIG 547

Query: 251 -DWNPPKNYWFCDLKNLSISSLLEDTI 276
             +     Y   D K+L  +++ +D +
Sbjct: 548 NIYKKYSRYIKMDKKDLIKTTVFKDYL 574



 Score = 66.6 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 101/281 (35%), Gaps = 32/281 (11%)

Query: 3   FVLKKIKTRYVM-------LSLVTLTVVYFSWSSHVEDNSPHVARI----------AIRG 45
           F++K+I + ++        + ++   +              +   +          ++  
Sbjct: 23  FIIKEIFSFFIKLFLFLLIVGVIISLIFKSIEEKPKVVIKDNAYVVIDLANSYKERSLSS 82

Query: 46  QIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPV 99
            + +   +     +  I+ +S DD  + +++ L+S   S    E + + +  ++   K V
Sbjct: 83  NLFEDDSINFYNLLTNIKNLSFDDKVSGVVLKLNSNSLSYAQSEELAQELSMLRGADKKV 142

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSS 158
           I     +     YL S A  I + +  S   +I   F+  +    L DK GV    +   
Sbjct: 143 IAYFENVNRKNYYLASYADEIYMPSANSTSVNIYPYFREEFYTKKLSDKFGVKFNIIHVG 202

Query: 159 PMKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216
             K+         ++ +A +    +++ +Y  F+ +VS +R +  D+   +        A
Sbjct: 203 DYKSYQENLAKDTMSKEAREDSTRILNLNYENFLDIVSLNRKLNRDELDKIIKDGDLVAA 262

Query: 217 ---EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
              +     LID     + +   L   G    +  I+D+  
Sbjct: 263 SSIDLFSNKLIDKYSYWDNLVTLL---GGKDKLISIQDYAK 300


>gi|331085365|ref|ZP_08334451.1| hypothetical protein HMPREF0987_00754 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408148|gb|EGG87638.1| hypothetical protein HMPREF0987_00754 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 329

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 68/284 (23%), Positives = 122/284 (42%), Gaps = 21/284 (7%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQI---EDSQEL------------IERIERISRDDSAT 67
                ++      P++  +A+ G I     S  +            ++ I+R+  D+   
Sbjct: 44  ALLGGNTTTLPGEPYIGIVAVEGTIQEQTSSDSIFDTVAGYQHDITLDYIDRMMEDEKNQ 103

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAE 125
            +++ + SPGG+ Y  E ++R +   K    +PV T +   AAS GY IS  S+ I A  
Sbjct: 104 GILLRVDSPGGTVYESEELYRKLVAYKEETGRPVWTYMEHYAASGGYYISAPSDKIYANP 163

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
            +  GSIGV+     +    +KLG+   S+ S   K      S++  + + + Q  VD S
Sbjct: 164 NTTTGSIGVIMSGYDMSGLYEKLGIRSVSITSGKNKD----MSKLTEEQIAIYQSSVDES 219

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           +  FV +V++ R +  +    ++DGR +T  +AK  GLID +   EE+ +++       +
Sbjct: 220 FDRFVEIVADGRKMTEETVREIADGRTYTAKQAKANGLIDEISLYEEMQEAMEQETGCTT 279

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
             + +    P    F  L+ L   S  E      +      L  
Sbjct: 280 FYEPEQGVSPLASLFSKLETLKPKSEAEVLTEWNEDLGSGVLMY 323


>gi|281424222|ref|ZP_06255135.1| signal peptide peptidase SppA [Prevotella oris F0302]
 gi|281401491|gb|EFB32322.1| signal peptide peptidase SppA [Prevotella oris F0302]
          Length = 588

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 66/266 (24%), Positives = 123/266 (46%), Gaps = 17/266 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED---------------SQELIERIERISRDDSATALI 70
             +        H+A     G I D                 ++ + +E +++DD   A++
Sbjct: 288 INADDTPVTGEHIAVYYAYGDIVDKASPQSIFQDDRQIVGNDMCKDLEDLAKDDDVKAVV 347

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + ++S GGSAYA E I+  I ++K  KPV+  +   AAS GY +S  +N IVA  T++ G
Sbjct: 348 IRVNSGGGSAYASEQIWHQISELKKIKPVVVSMSGAAASGGYYLSSNANWIVADPTTITG 407

Query: 131 SIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           SIG+   +         KLG++   VK++      +      P+ + ++Q+ V+  Y  F
Sbjct: 408 SIGIFGLFLDRSELYTKKLGINYAEVKTNRNSVFGASGHPFTPEQLSLLQNNVNRGYMLF 467

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
            + V+E R +  ++   ++ GR+W G +A K+ L+D +GG ++   +  A     +  + 
Sbjct: 468 KKRVAEGRKMTMEQVENIAQGRVWLGQDAIKLKLVDQLGGLDD-AIAKAAKLAKMNDYET 526

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDT 275
             +  P + W   L +      L + 
Sbjct: 527 ASYPSPLSTWEQLLGSYVGGDDLLNG 552



 Score = 98.5 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 99/284 (34%), Gaps = 31/284 (10%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTV----------VYFSWSSHVEDNSPHVARIAIRGQIEDS 50
           M+   K +    + L L  + +          +  S SS  +     V  + + G + + 
Sbjct: 1   MKDFFKNVFATMLGLFLFGIVMSFMGFMCLIGIIASSSSTTKIEDNSVLVLKLDGSMTEQ 60

Query: 51  QE-----------------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
           +E                  ++ I++   DD    + +     G      E I +A+   
Sbjct: 61  EEENMMNSLQGISSLSFEGTMKAIKKAKNDDKVAGIYLEAGQFGADLAQAEEIEKALLDF 120

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           +     I    E  ++ GY ++  +N I   +  ++   G+  +  Y K  L K+G+   
Sbjct: 121 RKSGKWIIAYGENYSTLGYYLASTANKIYLNKDGMIEWSGIGGEKVYYKNLLAKVGIKFV 180

Query: 154 SVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
           + K    K+  E      ++    +  Q  +D  ++  +  V+++R++  D     +D  
Sbjct: 181 TTKVGKYKSAVEQLTADNISDADREQTQRYLDGWWNTILATVAKNRSLNKDSLNAYADRV 240

Query: 212 I--WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           I   T    +K  L+D +   +++   +           I    
Sbjct: 241 ITLETPENMQKYKLVDGLIYNDQIADIVRKQLGIDKEDDINKLT 284


>gi|84499786|ref|ZP_00998074.1| peptidase, family S49 [Oceanicola batsensis HTCC2597]
 gi|84392930|gb|EAQ05141.1| peptidase, family S49 [Oceanicola batsensis HTCC2597]
          Length = 285

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 64/251 (25%), Positives = 106/251 (42%), Gaps = 14/251 (5%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVS 72
           L +        V    P VA I ++G I          + +   IER  R     A+ ++
Sbjct: 16  LYIGGMQILDRVMKRPPLVAVIRLQGMISSGPRGPLSDEAMAPVIERAFRRGKPAAVALA 75

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           ++SPGGS      I   I+++   K  PV   V + AAS GY ++CA+  I A  +S+VG
Sbjct: 76  INSPGGSPVQSSLIAARIRRLSEEKSVPVYAFVEDAAASGGYWLACAAEEIHADRSSVVG 135

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+         L + GV  +   S   K+   PF     + V  ++ ++   +  F+
Sbjct: 136 SIGVIAASFGAHVLLARQGVERRVHTSGKSKSMLDPFQPEKEEDVARLKSLLTDIHAAFI 195

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
             V   R     ++  L  G  W   +AK++GLID VG    V +  +         + +
Sbjct: 196 DHVKTHRGGKLKESEDLFTGEFWLAEKAKELGLIDHVGHLVPVMKEKFG-----DKVRFR 250

Query: 251 DWNPPKNYWFC 261
            + P + +   
Sbjct: 251 KYGPRRGWLSR 261


>gi|302842395|ref|XP_002952741.1| signal peptide peptidase [Volvox carteri f. nagariensis]
 gi|300262085|gb|EFJ46294.1| signal peptide peptidase [Volvox carteri f. nagariensis]
          Length = 799

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 8/226 (3%)

Query: 32  EDNSPHVARIAIRGQIED--------SQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                 +A +   G I             +I ++  +++D S  A+++ + SPGG A + 
Sbjct: 441 AGGKKRIAVLRTAGAIVGKSSGAAITPDGVIPKLRALAKDKSVAAVVLRIDSPGGDALSA 500

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           + ++R I+++   KPVI  + ++AAS GY ++ A+  IVA   ++ GSIGV+     +  
Sbjct: 501 DLMWREIRQLDAVKPVIASMADVAASGGYYMAMAARAIVAEPLTITGSIGVVTGKFNLSE 560

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
              K+G +   +         S     N +  ++       +Y  F    + SR +  + 
Sbjct: 561 LYCKIGYNKVLLSWGRYALLLSDIKGFNEEEEKLFDASAQHAYESFRNKAALSRGMEPEV 620

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
              ++ GR+W+G  AK+V L+D VGG  +               ++
Sbjct: 621 MEEVAQGRVWSGLAAKEVELVDAVGGIHKAISLARHAAGIPEGERV 666



 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 78/218 (35%), Gaps = 13/218 (5%)

Query: 34  NSPHVARIAIRGQIEDSQ-----------ELIERIERISRDDSATALIVSLSSPGGSAYA 82
               V    + G+I D              +   + + + D     + + +   G     
Sbjct: 177 KKDSVLTFTLEGEISDQSRGFFDSGLSLPAVCSCLRKAALDPRVQGVAIEIGPLGIGWAK 236

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            + I R I   +     +    +  A   Y ++ A + I A  T+ +   G +    +++
Sbjct: 237 VQEIKRHIDYFRASGKYVVAWMKQGAEKEYYLATACSEIYAPPTAYLSLRGFVTGGTFLR 296

Query: 143 PFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
             LDK+GV  +  +    K+  +     +++P+  + + D+ D     F+  VS +R   
Sbjct: 297 GVLDKVGVEPQVRRIGSYKSAGDQLLRQDMSPEQQEQLTDLQDDVIDEFLLQVSTARGKT 356

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
             +        ++   + K  G I  +  ++E+   L 
Sbjct: 357 TKEVKEFIHEGVYDMQKFKSGGWITDLWYEDELLTELK 394


>gi|240850068|ref|YP_002971461.1| protease SohB [Bartonella grahamii as4aup]
 gi|240267191|gb|ACS50779.1| protease SohB [Bartonella grahamii as4aup]
          Length = 282

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 118/283 (41%), Gaps = 19/283 (6%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIER----------IERISRDDSATALIV 71
            +          +   +  + ++G I DS   I R          +E+      + A+ +
Sbjct: 3   FIKSFIPRRFSSDKLEIPVVRLQGAIMDSSASISRTLSLSRCANLLEKAFAHKKSPAVAL 62

Query: 72  SLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
            ++SPGGS      IF+ I+ +  +  K V+  + ++AAS GY+I+CA + I A  +S+V
Sbjct: 63  IINSPGGSPVQSRFIFKRIRDLAEEKNKKVLVFIEDIAASGGYMIACAGDEIFADPSSIV 122

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+         L K+G+  +   +   K    PF       ++ ++ +    +  F
Sbjct: 123 GSIGVVSASFGFPELLKKIGIERRVYTAGKNKVTLDPFQPEKKADIEHLKSLQLEVHQTF 182

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           + LV E R         L  G  W+G ++ ++GL+D +     V +  +      +  K+
Sbjct: 183 IDLVKERRAEKLSDDSNLFTGMFWSGKQSVELGLVDGLNDVRSVIKERFG-----NDAKL 237

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
           +   PPK++      +   +  +   +        +   A+W 
Sbjct: 238 RLIMPPKSFLGPKTPSGVTAHTVYTVVDSALMAAEE--RALWQ 278


>gi|88608447|ref|YP_506296.1| signal peptide peptidase SppA, 36K type [Neorickettsia sennetsu
           str. Miyayama]
 gi|88600616|gb|ABD46084.1| signal peptide peptidase SppA, 36K type [Neorickettsia sennetsu
           str. Miyayama]
          Length = 308

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 124/255 (48%), Gaps = 7/255 (2%)

Query: 2   EFVLKKIKTRYVMLSLVTLTVVYFSWSSH------VEDNSPHVARIAIRGQIEDSQELIE 55
            F L+K  T + +++   + ++     S          ++P++ R+   G I+       
Sbjct: 11  NFSLRKRLTFWKVVTFALIALLLIVSGSSFRGGFFDSFSTPYIGRVVFSGVIDQDLARNS 70

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
           +    + +    A+I+ + S GG A A EA++  ++ V   KPV+   + + AS  Y+++
Sbjct: 71  QFASFADNPKIKAIILHVDSGGGGAAASEALYNVVRSVSQVKPVVIVANGIMASGAYMVA 130

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            A+  IVA  TS+VGSIG++ Q P       K+GV +  V+S  +KA PS   E   +A 
Sbjct: 131 MAAEHIVAYNTSIVGSIGMILQAPNFYEIGKKVGVKMDVVRSGRLKAFPSILEEFTKEAR 190

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
             M+  +  +   F+ +V E R I   +    ++ G+I+TG EA +  L+D +G +    
Sbjct: 191 LAMEHSISVANEHFLSMVQERRKITDARVMSEIATGKIFTGREALEFSLVDEIGDEGNAV 250

Query: 235 QSLYALGVDQSIRKI 249
           + L   G+   IR +
Sbjct: 251 RWLKERGITGKIRDL 265


>gi|218531356|ref|YP_002422172.1| peptidase S49 [Methylobacterium chloromethanicum CM4]
 gi|218523659|gb|ACK84244.1| peptidase S49 [Methylobacterium chloromethanicum CM4]
          Length = 286

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 69/273 (25%), Positives = 117/273 (42%), Gaps = 19/273 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSA 80
              +  P VA + + G I     +            +ER       +A+ + ++SPGGS 
Sbjct: 16  RFRETPPRVAVVRLSGAIGAVSPIRAGLSIGTVAPSLERAFTMPGLSAVALVINSPGGSP 75

Query: 81  YAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
                I+R I+ +   K +     V + AAS GY+I+CA++ IVA   SLVGSIGV+   
Sbjct: 76  VQSHLIYRRIRALAAEKEIRVFAFVEDAAASGGYMIACAADEIVADPASLVGSIGVVSAG 135

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                 ++++G+  +       KA   PF   NP+ +  ++++       F  LV E R 
Sbjct: 136 FGFDRLIERIGIERRVHTQGEAKAMLDPFRPENPQDIARLKEIQADVQALFSGLVRERR- 194

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              D +  L  G +WTG +A  +GL+D +G      ++ Y   VD     ++     +  
Sbjct: 195 PTLDASRDLFTGAVWTGRQALDLGLVDALGDLRGTLRARYGEKVD-----LRLVAENRGS 249

Query: 259 WFCDLKNLSISSLLEDTIP--LMKQTKVQGLWA 289
           W   L   +        +P  L+   + +  WA
Sbjct: 250 WLARLLRRAGPGQTTTGLPDALIAAVEERAAWA 282


>gi|118467630|ref|YP_885858.1| signal peptide peptidase SppA, 67K type [Mycobacterium smegmatis
           str. MC2 155]
 gi|118168917|gb|ABK69813.1| signal peptide peptidase SppA, 67K type [Mycobacterium smegmatis
           str. MC2 155]
          Length = 594

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 125/297 (42%), Gaps = 32/297 (10%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70
            S     + P +A + + G I                     +   +   + +D   A++
Sbjct: 292 PSLPGRKSKPTIAVVTLHGAIVSGRGGPQPLPFGRSSAGGDTIAAALREAAANDDVAAVV 351

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + + SPGGS    E ++R + + +   KPV+  +  +AAS GY +S A++ IVA   ++ 
Sbjct: 352 LRVDSPGGSVTGSETVWREVVRTRDAGKPVVASMGAVAASGGYYVSMAADEIVANAGTIT 411

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGVL      +   DKLGV   +V+++      S  +    +    ++   D  Y  F
Sbjct: 412 GSIGVLTGKFVSRELKDKLGVGSDAVRTNANADAWSTNAPFTDEQHARVEAEADLLYRDF 471

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           V   +E R +P ++   L+ GR+WTG++AK+ GL+D VGG          L         
Sbjct: 472 VERAAEGRKLPIEEMESLARGRVWTGSDAKERGLVDHVGGLRAAVTRAKVLAGFDEDADA 531

Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW-----------AVW 291
           +    P + W   L+    +   ++ L + +  +    V G+            A+W
Sbjct: 532 RVVAYPGSSWLDMLRPKPSSQPAAASLPEALAALLGKSVIGVLDQAERSMTGASALW 588



 Score = 99.3 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 78/210 (37%), Gaps = 2/210 (0%)

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
           +  I R + DD    LI  +  P  +    + +  AI     RKP +        +  Y 
Sbjct: 68  VAAIHRAAEDDRVAGLIARVQLPAAAPGPVQELRDAIVAFGERKPTVAWAETYPGTMSYY 127

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VN 171
           ++ A   I       VG IG      +++  LDK G+  + +     K+  + F+E    
Sbjct: 128 LASAFREIWMQPAGSVGLIGFATNATFLRDALDKAGIEAQFIARGEYKSAANVFTEGSYT 187

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
               +    +++S      + +++SR +  D    L+D        A   GL+D +G ++
Sbjct: 188 EPHREADARLIESLQEQVWQGIAQSRGLDPDTINTLADQAPLLREAAVTAGLVDRIGFRD 247

Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
           E ++ +  L            + P   +  
Sbjct: 248 EAYKRIGELAGGPENTDADHDDAPPRLFLS 277


>gi|119477001|ref|ZP_01617282.1| protease IV [marine gamma proteobacterium HTCC2143]
 gi|119449808|gb|EAW31045.1| protease IV [marine gamma proteobacterium HTCC2143]
          Length = 621

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 67/266 (25%), Positives = 123/266 (46%), Gaps = 13/266 (4%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVS 72
           +   +           +A I   G I D            L + I ++ RD+S  AL++ 
Sbjct: 311 LWIRNIELPSSVADGKIAVIVASGMILDGDWPPGYIGGDSLAQLIRQVRRDESVDALVLR 370

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
           + S GGSA+A E I R +  +K +    +  +   AAS GY IS  ++ I A  T+L GS
Sbjct: 371 VDSGGGSAFASEVIRRELALLKQQGRPLVVSMGSTAASGGYWISALADEIWATPTTLTGS 430

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IG+   +P ++  L KLG+S   V ++ M         +N    + MQ  +++ Y  F+ 
Sbjct: 431 IGIFSAFPTIEKTLGKLGISNDGVGTTAMADAGRIDRPLNSVFGRAMQSSLENGYARFLT 490

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIK 250
           +V+  R++  D+   ++ GR+W+GA+A   GL+D +GG ++   +   +        ++ 
Sbjct: 491 IVASGRDMTTDQVDDVAQGRVWSGADAFDKGLVDQLGGLDQAVAAAAKMANLDQFETEVV 550

Query: 251 D--WNPPKNYWFCDLKNLSISSLLED 274
                P + +    + +  + S L +
Sbjct: 551 QLPLTPQQQFIQELMGSEVMLSWLGN 576



 Score = 72.3 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 92/251 (36%), Gaps = 14/251 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           Q++I+ +   S D   T L++ L     G     + +   +++ +     I  + +  + 
Sbjct: 92  QDVIDAVRYASEDQRITTLVLKLDDLAFGGISKIQEVSLVLEEFRRSGKKIIAIGDNYSQ 151

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
             YL++  ++ I       V   G      Y K  L+K+ ++    +    K+   P   
Sbjct: 152 DQYLLASHADEIYLHPMGGVSIKGYGVYRSYYKKALEKMAINFHVFRVGNYKSAMEPMMR 211

Query: 170 --VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV--------LSDGRIWTGAEAK 219
             ++  + +     + S +  +V  ++  RN+  D            L++ +  +   A 
Sbjct: 212 ESMSDDSRESNLAWLSSLWGEYVDTIAARRNVSADSVNHYANKFDQVLAEHQGDSARAAA 271

Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
             G +D +  ++E+ Q L         +        + Y +     L  SS+ +  I ++
Sbjct: 272 ATGFVDAIVDRDEINQQLINEIGATDEKGFYQRIGFERYLWIRNIELP-SSVADGKIAVI 330

Query: 280 KQTK--VQGLW 288
             +   + G W
Sbjct: 331 VASGMILDGDW 341


>gi|294508389|ref|YP_003572447.1| Protease IV [Salinibacter ruber M8]
 gi|294344717|emb|CBH25495.1| Protease IV [Salinibacter ruber M8]
          Length = 746

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 111/205 (54%), Gaps = 8/205 (3%)

Query: 34  NSPHVARIAIRG--QIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
               +      G   I  SQ L      E +E    D    A+++ ++SPGGSA A EA+
Sbjct: 457 AQGRIVVGDPNGQSPIGGSQALGSTPLTEALETARTDSRTEAVVLRVNSPGGSAAASEAM 516

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
           +RA+++  N KPVI  + ++AAS GY ++  ++ I+A  T+  GSIGV       +   +
Sbjct: 517 WRAVKRTANEKPVIVSMGDVAASGGYYLAAGADSIMADPTTTTGSIGVFGILFNAEGLFE 576

Query: 147 K-LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           + LGV+   V++ P     S    ++P   +++   +D +Y+ F+R V+++RN+  +   
Sbjct: 577 EKLGVTFDGVRTGPYADLYSTTKPLSPDERRLVGGSIDQTYNTFLRRVADARNMDVEAVD 636

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQ 230
            ++ GR+W+G +AK+VGL+D  G  
Sbjct: 637 EVAQGRVWSGRDAKEVGLVDTTGTL 661



 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 96/274 (35%), Gaps = 36/274 (13%)

Query: 3   FVLKKIKTR-------YVMLSLVTLT------VVYFSWSSHVEDNSPHVARIAIRGQI-- 47
           F ++ + T         V L L+          V  S        S  V  + + G I  
Sbjct: 144 FFMRFLSTLAASVIGTLVALGLIVFFFVFFFFAVSLSADQTPTVQSGSVLTVPLAGDIPE 203

Query: 48  ----------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
                            D + L   + + S D    A+ +            E + +A+ 
Sbjct: 204 RVTNDPFQKAFGGGPSVDLRGLQTALRKASSDSRIEAVWLRTKGVSADWATLEEVRQAVV 263

Query: 92  KVKNRKPVI--TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           + +     +  +          Y ++ A++ +  A  S     G      +    L +L 
Sbjct: 264 QARESGLPVLASSDEFGMTEKDYFLASAADSVFTAPQSAFEYNGFGTTVTFFDGALQRLE 323

Query: 150 VSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
           V  + +++   K+   PF  S+++    + +  +++++   F+  VSE+R +  D    L
Sbjct: 324 VEPQLIRAGKYKSAGEPFVRSDLSAPNREQLTALLETTNEQFMTAVSEARGLSTDALNRL 383

Query: 208 -SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
             +  + + A A +  LID +  ++EV   L  L
Sbjct: 384 AEEDALLSSAAALEENLIDGLRYEDEVRDRLRGL 417


>gi|83815032|ref|YP_446454.1| signal peptide peptidase SppA, 67K type [Salinibacter ruber DSM
           13855]
 gi|83756426|gb|ABC44539.1| signal peptide peptidase SppA, 67K type [Salinibacter ruber DSM
           13855]
          Length = 746

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 111/205 (54%), Gaps = 8/205 (3%)

Query: 34  NSPHVARIAIRG--QIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
               +      G   I  SQ L      E +E    D    A+++ ++SPGGSA A EA+
Sbjct: 457 AQGRIVVGDPNGQSPIGGSQALGSTPLTEALETARTDSRTEAVVLRVNSPGGSAAASEAM 516

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
           +RA+++  N KPVI  + ++AAS GY ++  ++ I+A  T+  GSIGV       +   +
Sbjct: 517 WRAVKRTANEKPVIVSMGDVAASGGYYLAAGADSIMADPTTTTGSIGVFGILFNAEGLFE 576

Query: 147 K-LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           + LGV+   V++ P     S    ++P   +++   +D +Y+ F+R V+++RN+  +   
Sbjct: 577 EKLGVTFDGVRTGPYADLYSTTKPLSPDERRLVGGSIDQTYNTFLRRVADARNMDVEAVD 636

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQ 230
            ++ GR+W+G +AK+VGL+D  G  
Sbjct: 637 EVAQGRVWSGRDAKEVGLVDTTGTL 661



 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 96/274 (35%), Gaps = 36/274 (13%)

Query: 3   FVLKKIKTR-------YVMLSLVTLT------VVYFSWSSHVEDNSPHVARIAIRGQI-- 47
           F ++ + T         V L L+          V  S        S  V  + + G I  
Sbjct: 144 FFMRFLSTLAASVIGTLVALGLIVFFFVFFFFAVSLSADQTPTVQSGSVLTVPLSGDIPE 203

Query: 48  ----------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
                            D + L   + + S D    A+ +            E + +A+ 
Sbjct: 204 RVTNDPFQKAFGGGPSVDLRGLQTALRKASSDSRIEAVWLRTKGVSADWATLEEVRQAVV 263

Query: 92  KVKNRKPVI--TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           + +     +  +          Y ++ A++ +  A  S     G      +    L +L 
Sbjct: 264 QARESGLPVLASSDEFGMTEKDYFLASAADSVFTAPQSAFEYNGFGTTVTFFDGALQRLE 323

Query: 150 VSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
           V  + +++   K+   PF  S+++    + +  +++++   F+  VSE+R +  D    L
Sbjct: 324 VEPQLIRAGKYKSAGEPFVRSDLSEPNREQLTALLETTNEQFMTAVSEARGLSTDALNRL 383

Query: 208 -SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
             +  + + A A +  LID +  ++EV   L  L
Sbjct: 384 AEENALLSSAAALEENLIDGLRYEDEVRDRLRGL 417


>gi|188582538|ref|YP_001925983.1| peptidase S49 [Methylobacterium populi BJ001]
 gi|179346036|gb|ACB81448.1| peptidase S49 [Methylobacterium populi BJ001]
          Length = 286

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 116/266 (43%), Gaps = 19/266 (7%)

Query: 37  HVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
            VA + + G I              +   +ER       +A+ + ++SPGGS      I+
Sbjct: 23  RVAVVRLSGAIGAVSPIRPGLSIATVAPSLERAFSMPGLSAVALVVNSPGGSPVQSHLIY 82

Query: 88  RAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           R I+ +   K   V   V + AAS GY+I+CA++ IVA   SLVGSIGV+         +
Sbjct: 83  RRIRALAAEKEVRVFAFVEDAAASGGYMIACAADEIVADPASLVGSIGVVSAGFGFDRLI 142

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           +++G+  +       KA   PF   NP+ +  ++++       F  LV E R    D + 
Sbjct: 143 ERIGIERRVHTQGEAKAMLDPFRPENPEDIVRLKEIQADVQALFTGLVRERR-PGLDASR 201

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L  G +WTG +A ++GL+D +G      ++ Y   VD     ++     +  W   L  
Sbjct: 202 DLFTGAVWTGRQALELGLVDALGDLRTTLRARYGEKVD-----LRLVAENRGSWLARLLR 256

Query: 266 LSISSLLEDTIP--LMKQTKVQGLWA 289
            +        +P  L+   + +  WA
Sbjct: 257 RAGPGQTAAGLPDALIAAVEERAAWA 282


>gi|154150450|ref|YP_001404068.1| signal peptide peptidase SppA, 36K type [Candidatus Methanoregula
           boonei 6A8]
 gi|153999002|gb|ABS55425.1| signal peptide peptidase SppA, 36K type [Methanoregula boonei 6A8]
          Length = 282

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 111/245 (45%), Gaps = 14/245 (5%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNS-PHVARIAIRGQIEDSQELIE----------R 56
           +K   +++  + L +V F     + D     V  I + G ++    + +          +
Sbjct: 21  LKWLLIIIGGLFLVIVIFGAVYLLSDTQHAGVKVIRMEGTLDTGDFIADDSVGSEYVGNQ 80

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116
           +   + D    A+++ + SPGGS  A E I   ++  K +KPV+  +  MA SA Y +S 
Sbjct: 81  LRDAADDPMVDAIVLRVDSPGGSPAAAEEIIGDLEYAKTKKPVVVSMGSMATSAAYYVSA 140

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
            +N I A   +L G++GV++ +  +  ++ + G ++  VKS   K   +    + P    
Sbjct: 141 HANEIYADPDTLTGAVGVIWTFSDISDWMKQEGYNVTVVKSGDFKDMGADSHALTPAEQA 200

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
             Q +V+ S+  F+  V+  R I         DGR+  GA+A K+ L+D +G   +  + 
Sbjct: 201 YAQQIVNESFQEFINDVTTQRMIAKSDIE---DGRVIRGADAIKINLVDKLGNLNDAIEG 257

Query: 237 LYALG 241
              L 
Sbjct: 258 AQDLA 262


>gi|114563316|ref|YP_750829.1| signal peptide peptidase SppA, 67K type [Shewanella frigidimarina
           NCIMB 400]
 gi|114334609|gb|ABI71991.1| signal peptide peptidase SppA, 67K type [Shewanella frigidimarina
           NCIMB 400]
          Length = 614

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 109/209 (52%), Gaps = 11/209 (5%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                VA I  +G I            +     + +   DD   A+++ + SPGGSA+A 
Sbjct: 323 VEQDAVAVIVAKGTILNGKQPAGQIGGESTSALLMKARFDDKVKAVVLRVDSPGGSAFAS 382

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + +  +K   KPV+  +  +AAS GY IS +++ IVA  T+L GSIG+   +   +
Sbjct: 383 EQIRQEVLALKAAGKPVVVSMGSLAASGGYWISASADYIVATPTTLTGSIGIFGMFATFE 442

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+  GV+   V +S      SP  E+NP+   ++Q  ++  YH F+ LV++ R++  +
Sbjct: 443 QALNHFGVTSDGVATSDWAGL-SPARELNPQVAAVVQRHIERGYHEFISLVAKERHMTLE 501

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
           +   ++ GR+WTG  A  +GL+D +G  +
Sbjct: 502 QVDNIAQGRVWTGKRALTLGLVDELGDMD 530



 Score = 82.0 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 86/281 (30%), Gaps = 36/281 (12%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR- 62
           + K I        L  +TVV  +    +         + + G I D +  ++ IE     
Sbjct: 22  IRKFIINVIFFGLLAVITVVLLNSEDEIVVEDQSALVLNLSGSIVDQKHYVDPIEMAFSQ 81

Query: 63  ------------------------DDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRK 97
                                   D   T++++              AI  A+ + K   
Sbjct: 82  GQANDPEGEILLADVLYTINNATQDARITSIVLDLADLRDAGISKMTAIGEALTQFKAAN 141

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +  +        Y ++  ++ I      +V   G+     Y K  L+KL ++    + 
Sbjct: 142 KSVIAMANGYDQNQYFLASFADKIYLNNQGMVALDGLSRYRLYYKAALEKLKITTHVFRV 201

Query: 158 SPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVL 207
              K+   PF   +++       +++++  +  +  +V+ +R I  D+           L
Sbjct: 202 GTFKSAVEPFIRDDMSDADKVASKELLNDIWQSYSTIVASNRQIAPDQLVLSTDEYLAQL 261

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 +   A  +  +D +   +    ++          K
Sbjct: 262 DKAEGDSAQMAVNMKWVDELVSADAFRVAMIERVGSDKEGK 302


>gi|225619707|ref|YP_002720964.1| periplasmic serine protease SppA [Brachyspira hyodysenteriae WA1]
 gi|225214526|gb|ACN83260.1| SppA, Periplasmic serine proteases (ClpP class) [Brachyspira
           hyodysenteriae WA1]
          Length = 268

 Score =  112 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 3/226 (1%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAA 108
           ++LI   E   +     A+++ + SPGGS  + E   + ++ +K +  KP++     MAA
Sbjct: 10  EKLISDFEYYFKHPKVKAIVLQVDSPGGSLTSCEEALKYLKDLKKKYPKPIVASFRSMAA 69

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
           S GY IS  ++ I A E++L GSIGV+ Q+  V   +DK G+ + ++KS   K   SPF 
Sbjct: 70  SGGYYISMIADKIYANESTLTGSIGVISQFFNVSELMDKYGIKMYTIKSGRNKDSLSPFR 129

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVV 227
           E     +   QD+ D     F  +V +SR          + DGR+++G +A +VGLID +
Sbjct: 130 EPREDELAYWQDMTDEFVGQFTNVVEQSRGDKIKGNREDIFDGRVFSGKKALEVGLIDSI 189

Query: 228 GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273
           G   +  +    +G  +         P +     +L   +IS  ++
Sbjct: 190 GTLNDAVKDAAEMGGIEDEEPYIIKKPKEKNDVFNLLFANISESIK 235


>gi|254707871|ref|ZP_05169699.1| Clp protease [Brucella pinnipedialis M163/99/10]
 gi|256159103|ref|ZP_05456924.1| Clp protease [Brucella ceti M490/95/1]
 gi|260168171|ref|ZP_05754982.1| Clp protease [Brucella sp. F5/99]
          Length = 306

 Score =  112 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64
           L      ++              +  + + G I                   +E+   D 
Sbjct: 13  LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 72

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122
            A A+ +S++SPGG+      I+R I+ +  +++K V   V ++AAS GY+I+ A + I+
Sbjct: 73  HAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 132

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A  +S+VGSIGV+         L K+GV  +   +   K    PF     + ++ ++ + 
Sbjct: 133 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 192

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              +  F+ +V E R         L  G  WTG  A  +GLID +G      +  Y    
Sbjct: 193 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 249

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291
                K+K   P +      L  + + S   +   +       GL       A+W
Sbjct: 250 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 301


>gi|254703750|ref|ZP_05165578.1| Clp protease:peptidase U7:Na+/H+ antiporter NhaA [Brucella suis bv.
           3 str. 686]
 gi|256031039|ref|ZP_05444653.1| Clp protease:peptidase U7:Na+/H+ antiporter NhaA [Brucella
           pinnipedialis M292/94/1]
 gi|256060533|ref|ZP_05450701.1| Clp protease:peptidase U7:Na+/H+ antiporter NhaA [Brucella neotomae
           5K33]
 gi|256254442|ref|ZP_05459978.1| Clp protease:peptidase U7:Na+/H+ antiporter NhaA [Brucella ceti
           B1/94]
          Length = 299

 Score =  112 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64
           L      ++              +  + + G I                   +E+   D 
Sbjct: 6   LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 65

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122
            A A+ +S++SPGG+      I+R I+ +  +++K V   V ++AAS GY+I+ A + I+
Sbjct: 66  HAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 125

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A  +S+VGSIGV+         L K+GV  +   +   K    PF     + ++ ++ + 
Sbjct: 126 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 185

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              +  F+ +V E R         L  G  WTG  A  +GLID +G      +  Y    
Sbjct: 186 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 242

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291
                K+K   P +      L  + + S   +   +       GL       A+W
Sbjct: 243 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 294


>gi|254718576|ref|ZP_05180387.1| Clp protease [Brucella sp. 83/13]
 gi|265983552|ref|ZP_06096287.1| peptidase S49 [Brucella sp. 83/13]
 gi|264662144|gb|EEZ32405.1| peptidase S49 [Brucella sp. 83/13]
          Length = 290

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/272 (23%), Positives = 113/272 (41%), Gaps = 24/272 (8%)

Query: 38  VARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           +  + + G I                   +E+   D  A A+ +S++SPGG+      I+
Sbjct: 20  IPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADKHAPAVAISINSPGGAPVQSRLIY 79

Query: 88  RAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           R I+ +  +++K V   V ++AAS GY+I+ A + I+A  +S+VGSIGV+         L
Sbjct: 80  RRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEIIADPSSIVGSIGVVSASFGFPELL 139

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV  +   +   K    PF     + ++ ++ +    +  F+ +V E R        
Sbjct: 140 KKIGVERRVYTAGSNKVTLDPFQPEKAEDIKRLKALQLEIHATFIDMVKERRAGKLGDNP 199

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L  G  WTG  A  +GLID +G      +  Y         K+K   P +      L  
Sbjct: 200 DLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG-----DKVKLKLIQPQRGLLGRKLPG 254

Query: 266 LSISSLLEDTIPLMKQTKVQGLW------AVW 291
           + ++S   +   +       GL       A+W
Sbjct: 255 IGMNSGSVEPAQIAAHLG-DGLLCVAEEKAIW 285


>gi|296537377|ref|ZP_06899233.1| signal peptide peptidase SppA [Roseomonas cervicalis ATCC 49957]
 gi|296262298|gb|EFH09067.1| signal peptide peptidase SppA [Roseomonas cervicalis ATCC 49957]
          Length = 271

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/269 (24%), Positives = 113/269 (42%), Gaps = 19/269 (7%)

Query: 21  TVVYFSWSSHVEDNSPHVARIAIRGQIE-----------DSQELIERIERISRDDSATAL 69
            V++        D  P VA + + G I              + +   +ER         +
Sbjct: 1   MVIFSLMRIPFLDRGPRVALVRLSGLIAARGGGIGPAGLSLEGVAPVLERAFALKRLAGV 60

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETS 127
           ++ ++SPGGS      I   I+ +   K  PVI  V + AAS GY ++CA++ IVA  +S
Sbjct: 61  VLVINSPGGSPVQSSLIAARIRALAEEKKVPVIACVEDAAASGGYWLACAADEIVADPSS 120

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           +VGSIGV+     ++    KLGV  +   +   K+   PF  V P     +++++ + + 
Sbjct: 121 IVGSIGVISASFGLEELAAKLGVERRLTTAGGQKSFLDPFRPVEPWQQARLEELLSALHE 180

Query: 188 WFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
            F   V   R          L +GR WTG EA  +GLID +G  +   +  +        
Sbjct: 181 EFKAWVRSRRAAHLAAPEEALFNGRFWTGREALPLGLIDRLGNAQSEIRRRFG-----EK 235

Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
             +  + P +      L   +++ + E  
Sbjct: 236 TPVIPFGPKRPPLPMRLLRGAMAVVEERM 264


>gi|254713038|ref|ZP_05174849.1| Clp protease [Brucella ceti M644/93/1]
 gi|254716609|ref|ZP_05178420.1| Clp protease [Brucella ceti M13/05/1]
          Length = 306

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64
           L      ++              +  + + G I                   +E+   D 
Sbjct: 13  LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRATLSLASTAGILEKAFADK 72

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122
            A A+ +S++SPGG+      I+R I+ +  +++K V   V ++AAS GY+I+ A + I+
Sbjct: 73  HAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 132

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A  +S+VGSIGV+         L K+GV  +   +   K    PF     + ++ ++ + 
Sbjct: 133 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 192

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              +  F+ +V E R         L  G  WTG  A  +GLID +G      +  Y    
Sbjct: 193 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 249

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291
                K+K   P +      L  + + S   +   +       GL       A+W
Sbjct: 250 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 301


>gi|291460898|ref|ZP_06025776.2| protease IV [Fusobacterium periodonticum ATCC 33693]
 gi|291380138|gb|EFE87656.1| protease IV [Fusobacterium periodonticum ATCC 33693]
          Length = 588

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 113/267 (42%), Gaps = 23/267 (8%)

Query: 32  EDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLSSPGG 78
           +D+   V  I + G I ++Q             E I ++     +    A+++ ++SPGG
Sbjct: 309 DDSDNIVYVIPLEGDIVEAQTEIFSGEANINVNETIAKLNTAKENKKIKAVVLRVNSPGG 368

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           SA   + I   ++++ + KPV   +  +AAS GY IS  +N I     ++ GS+GV+   
Sbjct: 369 SALTSDIIAEKVKELASEKPVYVSMSSVAASGGYYISANANKIYVDRNTVTGSVGVVSVL 428

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                 L   GV+++ +         S  +    K    + +     Y  F+ +VS  R 
Sbjct: 429 VDYSSLLKDNGVNVEKISEGEYSDLYSADT-FTEKKYNKIYNSNLKVYEDFLNVVSNGRK 487

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK-------- 250
           I  ++   L++GR+WTG EA K GL D +GG       +      +    +         
Sbjct: 488 IDKERLKELAEGRVWTGTEAVKNGLADEIGGLYSTIYGVTEDNNIEDYTVVFAKDKIEIG 547

Query: 251 -DWNPPKNYWFCDLKNLSISSLLEDTI 276
             +     Y   D K+L  +++ +D +
Sbjct: 548 NIYKKYSRYIKMDKKDLIKTTIFKDYL 574



 Score = 67.3 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 100/281 (35%), Gaps = 32/281 (11%)

Query: 3   FVLKKIKTRYV-------MLSLVTLTVVYFSWSSHVEDNSPHVARI----------AIRG 45
           FV+K+I + ++       ++ ++   +                  +          ++  
Sbjct: 23  FVIKEIFSFFIKLFLFLLVIGVIIGLIFKSIEEKPQVVIKDKAYVVIDLANSYRERSLSS 82

Query: 46  QIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPV 99
            + +   +     +  I+ +S DD  + +++ L+S   S    E + + +  ++   K V
Sbjct: 83  SLFEDDSINFYNLLTNIKNLSFDDKVSGVVLKLNSNSLSYAQSEELAQELSMLRGADKKV 142

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSS 158
           I     +     YL S A  I + +  S   +I   F+  +    L DK GV    +   
Sbjct: 143 IAYFENVNRKNYYLASYADEIYMPSANSTSVNIYPYFREEFYTKKLSDKFGVKFNIIHVG 202

Query: 159 PMKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216
             K+         ++ +A +    +++ +Y  F+ +VS +R +  D    +        A
Sbjct: 203 DYKSYQENLAKDTMSKEAREDSTRILNLNYENFLDIVSLNRKLNRDDLDKIIKDGDLVAA 262

Query: 217 ---EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
              +     LID     + +   L   G    +  I+D+  
Sbjct: 263 SSIDLFNNKLIDKYSYWDNLVTIL---GGKDKLVSIQDYAK 300


>gi|254701204|ref|ZP_05163032.1| Clp protease:peptidase U7:Na+/H+ antiporter NhaA [Brucella suis bv.
           5 str. 513]
 gi|254709545|ref|ZP_05171356.1| Clp protease:peptidase U7:Na+/H+ antiporter NhaA [Brucella
           pinnipedialis B2/94]
 gi|261221612|ref|ZP_05935893.1| peptidase S49 [Brucella ceti B1/94]
 gi|261315361|ref|ZP_05954558.1| peptidase S49 [Brucella pinnipedialis M163/99/10]
 gi|261317072|ref|ZP_05956269.1| peptidase S49 [Brucella pinnipedialis B2/94]
 gi|261324527|ref|ZP_05963724.1| peptidase S49 [Brucella neotomae 5K33]
 gi|261751742|ref|ZP_05995451.1| peptidase S49 [Brucella suis bv. 5 str. 513]
 gi|261754396|ref|ZP_05998105.1| peptidase S49 [Brucella suis bv. 3 str. 686]
 gi|265988110|ref|ZP_06100667.1| peptidase S49 [Brucella pinnipedialis M292/94/1]
 gi|265997575|ref|ZP_06110132.1| peptidase S49 [Brucella ceti M490/95/1]
 gi|260920196|gb|EEX86849.1| peptidase S49 [Brucella ceti B1/94]
 gi|261296295|gb|EEX99791.1| peptidase S49 [Brucella pinnipedialis B2/94]
 gi|261300507|gb|EEY04004.1| peptidase S49 [Brucella neotomae 5K33]
 gi|261304387|gb|EEY07884.1| peptidase S49 [Brucella pinnipedialis M163/99/10]
 gi|261741495|gb|EEY29421.1| peptidase S49 [Brucella suis bv. 5 str. 513]
 gi|261744149|gb|EEY32075.1| peptidase S49 [Brucella suis bv. 3 str. 686]
 gi|262552043|gb|EEZ08033.1| peptidase S49 [Brucella ceti M490/95/1]
 gi|264660307|gb|EEZ30568.1| peptidase S49 [Brucella pinnipedialis M292/94/1]
          Length = 290

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/272 (23%), Positives = 112/272 (41%), Gaps = 24/272 (8%)

Query: 38  VARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           +  + + G I                   +E+   D  A A+ +S++SPGG+      I+
Sbjct: 20  IPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADKHAPAVAISINSPGGAPVQSRLIY 79

Query: 88  RAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           R I+ +  +++K V   V ++AAS GY+I+ A + I+A  +S+VGSIGV+         L
Sbjct: 80  RRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEIIADPSSIVGSIGVVSASFGFPELL 139

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV  +   +   K    PF     + ++ ++ +    +  F+ +V E R        
Sbjct: 140 KKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQLEIHATFIDMVKERRAGKLGDNP 199

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L  G  WTG  A  +GLID +G      +  Y         K+K   P +      L  
Sbjct: 200 DLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG-----DKVKLKLIQPQRGLLGRKLPG 254

Query: 266 LSISSLLEDTIPLMKQTKVQGLW------AVW 291
           + + S   +   +       GL       A+W
Sbjct: 255 IGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 285


>gi|209963904|ref|YP_002296819.1| signal peptide peptidase SppA, 67K type [Rhodospirillum centenum
           SW]
 gi|209957370|gb|ACI98006.1| signal peptide peptidase SppA, 67K type [Rhodospirillum centenum
           SW]
          Length = 595

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 123/285 (43%), Gaps = 23/285 (8%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE---------------DSQELIERIERISRDDSATALIV 71
            +   +  +P VA +   G I                 + ++ + I   + D S  A++ 
Sbjct: 287 AAEETDAQAPVVALVVGEGGIARGESDDNPVTGSEGFGATDVAKAINAAAADSSVKAILF 346

Query: 72  SLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
            ++SPGGSA   E + RA+++ + + KPVI  + ++AAS GY +S  ++ IVA   +  G
Sbjct: 347 RVNSPGGSAVGSEVVRRAVKRAREQGKPVIVSMGDLAASGGYWVSMDADRIVAQPGTFTG 406

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGVL          D LGV+             +      P  +     ++D  Y  F 
Sbjct: 407 SIGVLGGKLVTSGLTDMLGVNYGMTSRGRNATMWTTQQPYTPAELDRRAALLDDIYAQFT 466

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
             VS  RN+P +K   ++ GR+WTG +AK++GL+D +GG          +    +   ++
Sbjct: 467 TGVSAGRNLPLEKVQEVAKGRVWTGRQAKEIGLVDALGGYATALSLAREVMGLSADAPVR 526

Query: 251 --DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
              +  PK+ +   +      + ++     + Q  +    A + P
Sbjct: 527 VALFPKPKSQFELIMSLFDGGARVQ-----LGQWVLADALAEYRP 566



 Score = 95.8 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 91/273 (33%), Gaps = 31/273 (11%)

Query: 4   VLKKIKTRYVMLSLVTLTVV-------YFSWSSHVEDNSPHVARIAIRGQIEDSQ----- 51
           ++K I   + ++ L+ + +V                     V  + +   + +       
Sbjct: 1   MMKVIVRIFAVIGLLAVLLVGGAVAIGMMLSPGRPTLPDSVVLELDLEKPLSEQAPGNPF 60

Query: 52  ------------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV 99
                       +++  ++R +RD     LI    +  G     + +  A+++ +     
Sbjct: 61  AALSSDQTATLHDVVATLDRAARDPRVKGLIARAGTAEGGVATLQELRDAVERFRAAGKF 120

Query: 100 ITEV-----HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
                            Y ++ A + I       VG  G+L + P ++  L+KL +  + 
Sbjct: 121 ALVHAETFGEFSPGMQSYYLATAFDEIWLQPVGTVGITGILSERPLLRGTLEKLKIEPQI 180

Query: 155 VKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
            K    K   E     E  P   +M + ++   Y   V  ++  R +P D      D   
Sbjct: 181 DKRYEYKTAAEQFMEREPTPANEEMTESLIGDLYEQMVAGIAADRKLPIDAVNAAVDRAP 240

Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
               EA ++ L+D +G  +E+ ++         
Sbjct: 241 LLDKEALELKLVDRLGYYDELVETAKERTRSDK 273


>gi|118590806|ref|ZP_01548207.1| putative protease protein [Stappia aggregata IAM 12614]
 gi|118436782|gb|EAV43422.1| putative protease protein [Stappia aggregata IAM 12614]
          Length = 285

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 102/240 (42%), Gaps = 11/240 (4%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERI---------ERISRDDSATAL 69
            ++ +         ++ P +  + + G I         +         E+      A A+
Sbjct: 1   MISSLRRFLPKRFRNDKPVIPVVRLSGAIGGGGPFRSGLSLATASIPLEKAFSMKKAPAV 60

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
            + ++SPGGS      IF+ I+ +  +N K V+  V ++AAS GY+I+ A + I    +S
Sbjct: 61  ALVINSPGGSPVQSRLIFKRIRDLAKENEKDVLVFVEDVAASGGYMIALAGDEIFVDPSS 120

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           +VGSIGV+         + K+GV  +   +   K    PF    P+ ++ ++ +    + 
Sbjct: 121 IVGSIGVVAAGFGFTEMIKKIGVDRRVYTAGEKKVTLDPFQPEVPEDIEYIKSLQLEIHE 180

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F+ +V   R         L  G+ WTG    ++GL+D +G    V +  +    +  + 
Sbjct: 181 TFIDMVKSRRGDVLSNDPDLFSGKFWTGRTGVELGLVDAIGDLRGVIKERFGDKAEPKLI 240


>gi|319404556|emb|CBI78162.1| protease [Bartonella rochalimae ATCC BAA-1498]
          Length = 282

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/274 (22%), Positives = 112/274 (40%), Gaps = 19/274 (6%)

Query: 31  VEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSA 80
              N+  +  + ++G I                   +++      A A+ + ++SPGGS 
Sbjct: 12  FRSNTVQIPVVRLQGAIISSNSSISRTLSLARCASLLDKAFSYKKAPAVALVINSPGGSP 71

Query: 81  YAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
                IF+ I+ + N K    +T V ++AAS GY+I+CA + I +  +S+VGSIGV+   
Sbjct: 72  VQSRLIFQRIRDLANEKNKQVLTFVEDVAASGGYMIACAGDEIFSDPSSIVGSIGVVSAS 131

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                 L K+GV  +   +   K    PF       V  ++ +    +  F+ LV E R 
Sbjct: 132 FGFPELLKKIGVERRVYTAGKNKVTLDPFQPEKKTDVDHLKSLQLEVHQTFIDLVKERRM 191

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
                   +  G  W+G +  ++GLID +G    V +  +         K++  +PPK+ 
Sbjct: 192 SKLSDDSNIFTGMFWSGKKGVELGLIDELGDIRSVIKKRFG-----DNAKLRLISPPKSL 246

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
               +     +      +  +     +   A+W 
Sbjct: 247 LSSKVPLGISADTAYTAVDGVMMAAEER--ALWQ 278


>gi|294851776|ref|ZP_06792449.1| hypothetical protein BAZG_00691 [Brucella sp. NVSL 07-0026]
 gi|294820365|gb|EFG37364.1| hypothetical protein BAZG_00691 [Brucella sp. NVSL 07-0026]
          Length = 290

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/272 (23%), Positives = 112/272 (41%), Gaps = 24/272 (8%)

Query: 38  VARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           +  + + G I                   +E+   D  A A+ +S++SPGG+      I+
Sbjct: 20  IPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADKHAPAVAISINSPGGAPVQSRLIY 79

Query: 88  RAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           R I+ +  +++K V   V ++AAS GY+I+ A + I+A  +S+VGSIGV+         L
Sbjct: 80  RRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEIIADPSSIVGSIGVVSASFGFPELL 139

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV  +   +   K    PF     + ++ ++ +    +  F+ +V E R        
Sbjct: 140 KKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQLEIHATFIDMVKERRAGKLGDNP 199

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L  G  WTG  A  +GLID +G      +  Y         K+K   P +      L  
Sbjct: 200 DLFSGLFWTGTAAASLGLIDGLGDMRSFLRKTYG-----DKVKLKLIQPQRGLLGRKLPG 254

Query: 266 LSISSLLEDTIPLMKQTKVQGLW------AVW 291
           + + S   +   +       GL       A+W
Sbjct: 255 IGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 285


>gi|49473968|ref|YP_032010.1| protease sohB [Bartonella quintana str. Toulouse]
 gi|49239471|emb|CAF25822.1| Protease sohB [Bartonella quintana str. Toulouse]
          Length = 283

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 60/267 (22%), Positives = 115/267 (43%), Gaps = 19/267 (7%)

Query: 38  VARIAIRGQIEDSQELIER----------IERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           +  + + G I DS  ++ R          +++      A A+ + ++SPGGS      +F
Sbjct: 20  IPVVRLHGAIMDSNSMLARTLSLGRCASLLDKAFAYKKAPAVALIINSPGGSPVQSRLLF 79

Query: 88  RAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           + I+ +  +  K V   + ++AAS GY+I+CA + I A  +S++GSIGV+        FL
Sbjct: 80  KRIRDLAEEKNKKVFVFIEDIAASGGYMIACAGDEIFADPSSIIGSIGVVSASFGFPEFL 139

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV  +   +   K    PF       ++ ++ +    +  F+ LV E R        
Sbjct: 140 KKIGVERRVYTAGKNKVTLDPFQPEKKADIEHLKSLQLEVHQTFIDLVKERRATKLSNDS 199

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L  G  W+G ++ ++GLID +     V +  +  G      K++   PPK+       +
Sbjct: 200 DLFTGMFWSGRKSVELGLIDGLNDIRSVIKERFGSG-----TKLRLITPPKSLLGPKTPS 254

Query: 266 LSISSLLEDTIPLMKQTKVQGLWAVWN 292
              ++ +   +        +    +W 
Sbjct: 255 GVTANAVYTAVDSALIAAQERT--LWQ 279


>gi|307941593|ref|ZP_07656948.1| Na(+)/H(+) antiporter NhaA [Roseibium sp. TrichSKD4]
 gi|307775201|gb|EFO34407.1| Na(+)/H(+) antiporter NhaA [Roseibium sp. TrichSKD4]
          Length = 285

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/279 (22%), Positives = 123/279 (44%), Gaps = 27/279 (9%)

Query: 30  HVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSA 80
              +    V  + ++G I              + +++E+      A A+ + ++SPGGS 
Sbjct: 12  KFRNEGQTVPVVRLQGAIGMATPLRPGLSLAGVAQQLEKAFSMKKAPAVALVINSPGGSP 71

Query: 81  YAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
                I++ I+ +  +  K V+  V ++AAS GY+I+ A + I+A  +S+VGSIGV+   
Sbjct: 72  VQSRLIYKRIRDLAEKHEKEVLVFVEDVAASGGYMIAVAGDEIIADPSSIVGSIGVVSAG 131

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             +K  ++KLGV  +   +   K    PF +  P+ ++ ++ +    +  F+ +V   R+
Sbjct: 132 FGMKGLIEKLGVERRVYTAGENKVTLDPFQDEKPEDIEHLKSLQLEIHETFIDMVKARRS 191

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
                   L  G+ W G  A+ +GL+D +G      +S +         ++K  + PK  
Sbjct: 192 DVLSDNPDLFTGKFWAGKTARDLGLVDALGDVRSTLKSRFG-----EKTELKLISAPKGL 246

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA------VW 291
           +        +S+L       M ++    L +      +W
Sbjct: 247 FGRRTGGNGVSALFG-----MDKSMTDDLVSSVEERALW 280


>gi|18977955|ref|NP_579312.1| protease IV [Pyrococcus furiosus DSM 3638]
 gi|18893729|gb|AAL81707.1| protease iv [Pyrococcus furiosus DSM 3638]
          Length = 329

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 117/242 (48%), Gaps = 3/242 (1%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
                E  +  +A + I G I+++   E+++++E I  D S   +++ + SPGG      
Sbjct: 76  IQKQNETANGSLAIVPIFGLIDENMALEVVKKLEVIKSDPSIRGVLLWIDSPGGYIGPVR 135

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           AI++ ++++   KP++  +   A S GY I+C ++ I+A   + VGSIGV++ +   + +
Sbjct: 136 AIYKEVKELAYIKPIVAYISGYATSGGYYIACGADKIIADPYAQVGSIGVIYVHFNAQKY 195

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
            +  G+ ++  K+ P K   + +  + P+  +++Q  +D  +  F+ +V E RN+   K 
Sbjct: 196 YEMNGIEVEVFKTGPYKDMGADWRGLKPEEREIIQKQIDVYFKTFLDVVMEGRNLNETKV 255

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
              +DGR W   E     LID +G  +   +    L   +S   +     P N+      
Sbjct: 256 KEYADGRAWFAYE-VNGTLIDDIGDLQYAIEETKKLANLKSANIVIFDVKPSNFEIRGSS 314

Query: 265 NL 266
            L
Sbjct: 315 AL 316


>gi|328544962|ref|YP_004305071.1| peptidase, S49 (Protease IV) family [polymorphum gilvum
           SL003B-26A1]
 gi|326414704|gb|ADZ71767.1| Peptidase, S49 (Protease IV) family [Polymorphum gilvum
           SL003B-26A1]
          Length = 285

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 69/264 (26%), Positives = 119/264 (45%), Gaps = 14/264 (5%)

Query: 38  VARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           V  + ++G I              +   +ER      A A+ + ++SPGGS      IFR
Sbjct: 20  VPVVRLQGPIGLVTPLRPGLSLASVALPLERAFSVRKAPAVALIINSPGGSPVQSRLIFR 79

Query: 89  AIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
            I+ +  K++K V+  + ++AAS GY+++ A + IVA   S+VGSIGV+         +D
Sbjct: 80  RIRDLAEKHKKDVLVFIEDVAASGGYMLALAGDEIVADPASIVGSIGVVSAGFGFTGLID 139

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           K+GV  +   +   KA   PF   NP+ V  ++ +    +  F+ +V E R         
Sbjct: 140 KIGVERRVYTAGEKKAILDPFRPENPEDVAHLKALQHEIHEIFIDMVRERRGDILADNPD 199

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI-KDWNPPKNYWFCDLKN 265
           L  G+ WTG  A+ +GL+D +G    V +  Y   V+  +  + +     +         
Sbjct: 200 LFSGQFWTGRTARDLGLVDSLGDLSAVLRRRYGEAVEPRLISLPRGLFGRRTGVGVGAAA 259

Query: 266 LSISSLLEDTIPLMKQTKVQGLWA 289
             + + L D   L+   + + LWA
Sbjct: 260 QPLPAGLGD--DLLSAVEARALWA 281


>gi|163795884|ref|ZP_02189848.1| dihydropyrimidinase [alpha proteobacterium BAL199]
 gi|159178917|gb|EDP63453.1| dihydropyrimidinase [alpha proteobacterium BAL199]
          Length = 583

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 69/267 (25%), Positives = 113/267 (42%), Gaps = 14/267 (5%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALI 70
           Y + +     +   VA I + G I               S ++ E ++ +  D +  A+I
Sbjct: 280 YLAQAGRPNADGTRVALIHLDGTIDRGEGGGLSGRGSVGSAQITETVDEVLADKAVRAVI 339

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + +SSPGGS  A + +   I +++    PVI     +AAS GY  +  ++ I+A   +L 
Sbjct: 340 LRISSPGGSYVASDTMRHDIGRLRAAGLPVIASFANIAASGGYFAALPADHIIAHPATLT 399

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIG +         LDKL V+I  V+        S          Q ++ ++D  Y  F
Sbjct: 400 GSIGAVGGKVSGSGLLDKLEVAIDRVEVGRNAGMFSSTRPFTSDQRQHLRRMLDDIYADF 459

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
              V E+R +   +   ++ GRIWTG +A++VGL+D +GG  E  Q             I
Sbjct: 460 AGKVGEARRLSPGEIDAVARGRIWTGEDAQRVGLVDGLGGYAEAMQLTRQTIGLTPDAPI 519

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTI 276
           +    P+     D     I S     +
Sbjct: 520 ERIRFPRGVGSLDALFEVIRSGEIRGV 546



 Score = 70.0 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 81/224 (36%), Gaps = 5/224 (2%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGG 78
            +  +  S S         +A +          +L++ +++ + D   T  I  LS    
Sbjct: 44  IVLSIDLSGSVDEASPLDPLAELFPEQAGLGLVDLVDILDQATGDRRVTGAIFDLSGAQI 103

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASA---GYLISCASNIIVAAETSLVGSIGVL 135
                + +  A+ + +     I    +         Y ++ A + I    + L+   G+ 
Sbjct: 104 GLAQTQELRAAVFRFRAAGKTIVAFADSYEGDGVGPYYLASAFDRIWMQPSGLLVLTGIS 163

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA--VQMMQDVVDSSYHWFVRLV 193
            + P  +  LD++G+  +  +    K   +  +E    A     +  V +S Y   V  +
Sbjct: 164 MEVPLARNLLDEVGLLPEFEQRFEFKGAMATLTETTMPAAVRDNLARVANSLYGQVVSGI 223

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           + +R +       L D       EA+  GL+D +G + +   S+
Sbjct: 224 ASTRRLGGTTVSALIDRGPLLAGEARGNGLVDALGYRSDAEASI 267


>gi|261218409|ref|ZP_05932690.1| peptidase S49 [Brucella ceti M13/05/1]
 gi|261320742|ref|ZP_05959939.1| peptidase S49 [Brucella ceti M644/93/1]
 gi|260923498|gb|EEX90066.1| peptidase S49 [Brucella ceti M13/05/1]
 gi|261293432|gb|EEX96928.1| peptidase S49 [Brucella ceti M644/93/1]
          Length = 290

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/272 (23%), Positives = 112/272 (41%), Gaps = 24/272 (8%)

Query: 38  VARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           +  + + G I                   +E+   D  A A+ +S++SPGG+      I+
Sbjct: 20  IPVVRLHGAIMTGGTSLRATLSLASTAGILEKAFADKHAPAVAISINSPGGAPVQSRLIY 79

Query: 88  RAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           R I+ +  +++K V   V ++AAS GY+I+ A + I+A  +S+VGSIGV+         L
Sbjct: 80  RRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEIIADPSSIVGSIGVVSASFGFPELL 139

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV  +   +   K    PF     + ++ ++ +    +  F+ +V E R        
Sbjct: 140 KKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQLEIHATFIDMVKERRAGKLGDNP 199

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L  G  WTG  A  +GLID +G      +  Y         K+K   P +      L  
Sbjct: 200 DLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG-----DKVKLKLIQPQRGLLGRKLPG 254

Query: 266 LSISSLLEDTIPLMKQTKVQGLW------AVW 291
           + + S   +   +       GL       A+W
Sbjct: 255 IGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 285


>gi|52549905|gb|AAU83754.1| protease IV [uncultured archaeon GZfos33H6]
          Length = 251

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 111/242 (45%), Gaps = 12/242 (4%)

Query: 33  DNSPHVARIAIRGQIEDSQE----------LIERIERISRDDSATALIVSLSSPGGSAYA 82
                +A I I+G I   +           LI+ I          A+I  ++SPGG+ +A
Sbjct: 7   KEKGSIAIIPIKGMITSEESGFGLMAASTVLIKDIAEAEIKRKIKAVIFEINSPGGTPFA 66

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            + I   I+ +   KP I  V E AAS  Y I+ A + IVA E S VGSIG +   P + 
Sbjct: 67  SKEIATCIENI--DKPAIAWVREYAASGAYWIASACDEIVADELSTVGSIGAMSIRPDIG 124

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             + K G+ I+++++   K    P+ ++  +  ++++  +D     F+  V+++R +   
Sbjct: 125 ELMKKFGIDIETLRTGRYKGMGLPYEKLTEEERELLKKELDEIQDNFLNAVAKNRKLDES 184

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           K   LS  +++ G EAK++GLID +GG+E   +        +  + +      +      
Sbjct: 185 KMKELSTAKVYLGREAKEMGLIDHLGGKELAIRIAKERSGIRKEKIVDYGERKRKGLLRR 244

Query: 263 LK 264
             
Sbjct: 245 AM 246


>gi|110633065|ref|YP_673273.1| peptidase S49 [Mesorhizobium sp. BNC1]
 gi|110284049|gb|ABG62108.1| peptidase S49 [Chelativorans sp. BNC1]
          Length = 286

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 69/278 (24%), Positives = 117/278 (42%), Gaps = 20/278 (7%)

Query: 29  SHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGG 78
             +  +S  +  + + G I                   +E+     SA A+ +S++SPGG
Sbjct: 11  KSLRSDSVTIPVVRLHGTIMAGGSPMRQSLSLASTAGLLEKAFSF-SAPAVAISINSPGG 69

Query: 79  SAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           S      I+R I+ +  + +K V   V ++AAS GY+I+ A + I++  +S+VGSIGV+ 
Sbjct: 70  SPVQSRLIYRRIRDLAEERKKNVFVFVEDIAASGGYMIALAGDEIISDPSSIVGSIGVVS 129

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                +  + K+GV  +   S   KA   PF     + V+ ++ + +  +  F+ LV E 
Sbjct: 130 AGFGFQDLIKKIGVERRVHTSGRNKAILDPFQPEKEEDVERLKALQEEVHQTFISLVRER 189

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R         L  G  WTG     +GL+D VG      +  Y         ++K  +PP+
Sbjct: 190 RGAKLANDDDLFTGLFWTGERGLSLGLVDAVGDMRSFLKHRYG-----EKTRLKLVSPPR 244

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGL--WAVWN 292
             +   L    +     D         VQ L   A+W 
Sbjct: 245 GLFGRRLGFFGLDMKETDIAAAAASGLVQALEEQALWR 282


>gi|149186505|ref|ZP_01864817.1| periplasmic serine protease [Erythrobacter sp. SD-21]
 gi|148829732|gb|EDL48171.1| periplasmic serine protease [Erythrobacter sp. SD-21]
          Length = 626

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 104/220 (47%), Gaps = 11/220 (5%)

Query: 38  VARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           +  + I G+I D +          +   ++    D     L+V + SPGGSA A E I  
Sbjct: 314 IGVVTIAGEIVDGEAGPGTAGGTRIATLLDEAL-DQDFAGLVVRVDSPGGSALASEEIRN 372

Query: 89  AIQKVKNRKPVI-TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
           AI + K +   +   +  +AAS GY ++  ++ I A   ++ GSIG+    P  +     
Sbjct: 373 AILRHKAKDIPVAVSMANVAASGGYWVATPADRIFAEPETITGSIGIFALIPTFEDAAAS 432

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
           +GV+   V++ P+  +P P +   P+  +++Q  ++  Y  F+  V+ +R +  ++   +
Sbjct: 433 IGVNSDGVQTGPLSGQPDPIAGFTPEVDRILQASIEDGYTDFLTRVANARQMTLEQVDRV 492

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
             GR+W G  A+++ L+D  GG  +  + + A       +
Sbjct: 493 GQGRVWDGGTARQIRLVDEYGGMADALEWVAAQAQLGDEK 532



 Score = 73.1 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 82/245 (33%), Gaps = 37/245 (15%)

Query: 39  ARIAIRGQIED----------------------SQELIERIERISRDDSATALIVSLSSP 76
             + + G I +                      +++L+  I   + D+  TA+++ L   
Sbjct: 48  LLLELDGVIVEERTPIDPFAALLSGSAPVGEYQARDLVRAINAAASDERITAVVLDLDRF 107

Query: 77  GG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
            G        +  A+ +V+     +       A  G  ++  ++ +           G  
Sbjct: 108 MGAGQVHLAEVGAALDRVRAADKPVLAYATAYADDGVFLAAHASEVWVNPQGGAFVAGPG 167

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLV 193
               Y    LDKL V+ +  K    K+   P++E  ++  A +  Q +  + +  +   V
Sbjct: 168 GNRLYYAGLLDKLKVNARVYKVGTYKSAVEPYTESSMSEPARENAQALYGALWEEWQANV 227

Query: 194 SESRNIPYDKTLVLSDGRI--W-------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            ++R       L L  G    W           A    L+D +G + E  + +  L  + 
Sbjct: 228 KKAR---PAADLKLVSGDPAAWVEAAKGDLATAALNARLVDKLGSRTEFNERVVELVGED 284

Query: 245 SIRKI 249
              ++
Sbjct: 285 EWSEL 289


>gi|292656116|ref|YP_003536013.1| proteinase IV-like protein [Haloferax volcanii DS2]
 gi|291372078|gb|ADE04305.1| proteinase IV-like protein [Haloferax volcanii DS2]
          Length = 299

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 100/261 (38%), Gaps = 20/261 (7%)

Query: 21  TVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGG 78
             +              VA I++ G I    + +L E +     ++S  A+++ + SPGG
Sbjct: 27  AFLAPVVYDAAAPTPDRVAVISVDGTITSYTADQLEEDLHEARENESIKAVVLQVDSPGG 86

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           SA A E ++ A+ +     PV++ V    AS  Y     S  I    +S++GS+GV    
Sbjct: 87  SAAASEQMYLAVNRTAQEMPVVSSVEGTGASGAYYTMLPSESIYVTPSSVIGSVGVRGSA 146

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P        +G S   +++ P KA  +                  +  H FV  V E R 
Sbjct: 147 P--------IGGSSNEIRTGPDKASMTLDHREAQIE---------TLKHAFVGSVMEHRG 189

Query: 199 IPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
                    ++  +++TGA A + G  D +G  +       +    ++   ++     ++
Sbjct: 190 DELSLSREEVAYAKVYTGARATQNGYADDIGTLQTAIDRAASEAGLENYEVVEKEPSTRS 249

Query: 258 YWFCDLKNLSISSLLEDTIPL 278
                      S+++ +  P+
Sbjct: 250 GIILLSSQNGNSTVVVEESPI 270


>gi|254420657|ref|ZP_05034381.1| signal peptide peptidase SppA, 67K type [Brevundimonas sp. BAL3]
 gi|196186834|gb|EDX81810.1| signal peptide peptidase SppA, 67K type [Brevundimonas sp. BAL3]
          Length = 592

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 106/289 (36%), Gaps = 19/289 (6%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED---------------SQELIERIERIS 61
           +V                   +A +   G I                 S +  E I    
Sbjct: 276 IVEFDQYTSDKGERTGSGKNAIAIVGGEGAIVTGRSDGGGFGGGSSIHSDDTAEAIYDAI 335

Query: 62  RDDSATALIVSLSSPGGSAYAGEAI-FRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            D    A++  +SSPGGS  A E I           KPV+  +   AAS GY IS  ++ 
Sbjct: 336 EDKGVKAIVFRVSSPGGSPEASEQILAAVRAAKAAGKPVVVSMGAYAASGGYWISSEADW 395

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-PMKAEPSPFSEVNPKAVQMMQ 179
           IVA  ++L GSIGV      +   L + GV ++ +    P     SP             
Sbjct: 396 IVAQPSTLTGSIGVFGGKFVIADALGRFGVDMRELTVGGPYADAFSPTQSFTNSQRAAFA 455

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +D  Y  F+  V+  R +   +   ++ GR+WTGA+A  +GL+D +GG  E      A
Sbjct: 456 GSMDRIYDDFITRVATGRKLEPARVREIAKGRVWTGAQALPLGLVDQLGGLTEAVAKAKA 515

Query: 240 LGVDQSIRKIKD--WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           L    +   ++   +   K+ W    +   + S     + ++       
Sbjct: 516 LAKIPAGESVRFKHFPKSKSPWEALSEMFGVQSEAAQALVMLGGVMADP 564



 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/301 (10%), Positives = 98/301 (32%), Gaps = 27/301 (8%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIR------------------G 45
           VL       + + ++ + ++  + +   +  +P  + + +                   G
Sbjct: 8   VLGVFTGLILFVVVIPVVLLTVAIAGSSKPTAPATSVLELDLREGVSDQPSTNPFAAFGG 67

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
                 ++++ + +   D S  AL++ L   G +    + + +A+++ +     +    +
Sbjct: 68  SGLSVTQVVDGLAQAEEDKSVKALLIRLPESGMTPATADELRQAVRRFRASGKPVIAHSQ 127

Query: 106 MAASA-----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160
             A        Y++  +++ +    T+   + G      ++    +K GV     +    
Sbjct: 128 GFAPMGAVMSTYMVGASASELWMQNTAGFQATGFSADSVFLGRAFEKYGVRADFEQRYEY 187

Query: 161 KA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEA 218
           K        S+      + M   + S Y   +   ++ R         + +   ++  +A
Sbjct: 188 KNAVNEYTQSDYTGPHREAMTAWMTSLYDSALANAAQDRKTTPAALKTVIEAGPYSAEQA 247

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278
               LID +G  EE    +          +I +++   +       +   +  +      
Sbjct: 248 LANKLIDKIGQVEEAEAEIKRRAG--KGAEIVEFDQYTSDKGERTGSGKNAIAIVGGEGA 305

Query: 279 M 279
           +
Sbjct: 306 I 306


>gi|126740611|ref|ZP_01756298.1| peptidase, family S49 [Roseobacter sp. SK209-2-6]
 gi|126718412|gb|EBA15127.1| peptidase, family S49 [Roseobacter sp. SK209-2-6]
          Length = 265

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/250 (24%), Positives = 109/250 (43%), Gaps = 14/250 (5%)

Query: 33  DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
              P V+ + + G I            L   +ER        A+ + ++SPGGS      
Sbjct: 9   KKPPLVSVVRLNGAIGMPGRGSLSDAALAPVLERAFSKGKPAAVALEINSPGGSPVQSSL 68

Query: 86  IFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           I   IQ++   K  PVI  V ++AAS GY ++ +++ I A  +S+VGSIGV+        
Sbjct: 69  IGARIQRLAKEKNVPVIAFVEDVAASGGYWLAASADEIWADASSVVGSIGVISAGFGAHE 128

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L++ G+  +   +   K+   PF   NP+ V  ++ +++  +  F+  V+E R    D 
Sbjct: 129 LLNRHGIERRVYTAGESKSMLDPFRAENPEDVTRLKGLLEDIHQNFIDHVTERRGDKLDG 188

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
           +  L  G +W    A  +GLID +G  +   +  +         +I+ +   K +     
Sbjct: 189 SHKLFTGEVWLARRAVDLGLIDGIGHLQPALKQRFG-----DKVQIRRYGMKKPFLSRFG 243

Query: 264 KNLSISSLLE 273
             L+  +L  
Sbjct: 244 MRLAQDALTG 253


>gi|157964478|ref|YP_001499302.1| Signal peptide peptidase SppA, 36K type [Rickettsia massiliae MTU5]
 gi|157844254|gb|ABV84755.1| Signal peptide peptidase SppA, 36K type [Rickettsia massiliae MTU5]
          Length = 304

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 114/265 (43%), Gaps = 18/265 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPG 77
           ++S   ++   +A + + G I            + L E IE+  +     AL + ++SPG
Sbjct: 30  FASVFGNSKEVIAVLRLSGVIGKVSTMQSGLTLESLNELIEKAFKIKKLKALCLIINSPG 89

Query: 78  GSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           GS    E I + I+ +  +N+  + + + +MAAS GY ++C+ + I A  +S++GSIGV+
Sbjct: 90  GSPVQSELIAKRIRDLAKENKIKIYSFIEDMAASGGYWLACSGDRIYALPSSVIGSIGVV 149

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                    ++KLG+  +       K+   PF  +N   +++++++    Y  F+  V  
Sbjct: 150 SSGFGFHEAINKLGIERRVYTEGKNKSVLDPFKPINKDDLKIIKNLQKQVYEHFIEYVKT 209

Query: 196 SRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
            R     +   +  +G  W G  A   GLID +G    V +  +   +         +  
Sbjct: 210 RRAGKLTQQDEILFNGEFWAGQTALDYGLIDGIGDMYSVMKEKFGDNIKF------QYLY 263

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLM 279
            K  W      +    L ++    +
Sbjct: 264 AKQSWLKKKLGMGSKILTDNFANSL 288


>gi|196018409|ref|XP_002118798.1| hypothetical protein TRIADDRAFT_62805 [Trichoplax adhaerens]
 gi|190578184|gb|EDV18716.1| hypothetical protein TRIADDRAFT_62805 [Trichoplax adhaerens]
          Length = 783

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 124/200 (62%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            + ++QE+I+ + +++ D++  A++V+++S GG+   GE+++R ++++   KPV+  + E
Sbjct: 584 TLMENQEMIKSLNKLANDNNVKAVLVNINSTGGTGAGGESLYRELRRIAKNKPVVASIGE 643

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           + ASAGY+++  ++ I A + SLVGSIGV+     +     K G++++ +KSSP+K  P+
Sbjct: 644 IGASAGYMVALGTDRIFAYDISLVGSIGVIIMNFEINELAKKHGINLELIKSSPLKGVPN 703

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
            F +++ +  + +Q++ + S  +F++LV   RN+  +    +S+G+I+ G +A K+ LID
Sbjct: 704 YFEKLDNQQKEYVQNLANESNQYFIKLVKNRRNLSEEDLKAVSNGKIFIGTKAMKLKLID 763

Query: 226 VVGGQEEVWQSLYALGVDQS 245
            VG   +    L      ++
Sbjct: 764 QVGDMNDAINWLKQKDDLKN 783


>gi|254796774|ref|YP_003081610.1| signal peptide peptidase SppA, 36K type [Neorickettsia risticii
           str. Illinois]
 gi|254589965|gb|ACT69327.1| signal peptide peptidase SppA, 36K type [Neorickettsia risticii
           str. Illinois]
          Length = 308

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 141/299 (47%), Gaps = 15/299 (5%)

Query: 2   EFVLKKIKTRYVMLSLVTLTVVYFSWSSH------VEDNSPHVARIAIRGQIEDSQELIE 55
              L+K  T + +++ + + V+     S          ++P++ R+   G I   Q+L+ 
Sbjct: 11  NSSLRKRLTFWKVVTFIVIGVLLVVSGSSFRGGLFDSFSAPYIGRVVFSGII--DQDLVR 68

Query: 56  RIERI--SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
             +    + +    A+I+ + S GG A A EA++ A++ V   KPV+   + M AS  Y+
Sbjct: 69  NSQFASFADNPKIKAVILHVDSGGGGAAASEALYNAVRSVSLVKPVVVVANGMMASGAYM 128

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           ++ A+  IVA  +S+VGSIG++ Q P       K+G+ +  V+S  +KA PS   E   +
Sbjct: 129 VAMAAEHIVAYNSSIVGSIGMILQAPNFHEIGKKVGIKMDVVRSGRLKAFPSILEEFTKE 188

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
           A   M+  +  +   F+ +V E R I   +    ++ G+I+TG EA +  L+D +G +  
Sbjct: 189 ARSSMEHSISVANEHFLSMVQERRKITDARVMSEIATGKIFTGKEALEFALVDEIGDETN 248

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
             + L  +G+   IR +   +           +  +S L E      +     GL AV+
Sbjct: 249 AVRWLKEMGITGKIRDLGFVSGRGFRVDKISPSSYLSVLNE----FFRYLYSPGLLAVF 303


>gi|222147714|ref|YP_002548671.1| proteinase sohB [Agrobacterium vitis S4]
 gi|221734702|gb|ACM35665.1| proteinase sohB [Agrobacterium vitis S4]
          Length = 288

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 114/265 (43%), Gaps = 13/265 (4%)

Query: 38  VARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           +  + + G I               +   +E+  +   + A+++SL+SPGGS      IF
Sbjct: 20  IPVVRLHGAIMSGGSRFRPALNLAAIAPLLEKAFKLKDSPAVVLSLNSPGGSPVQSRMIF 79

Query: 88  RAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           + I+ +  ++ K V+  V ++AAS GY+I+ A + I+A  TS+VGSIGV+         L
Sbjct: 80  QRIRTLADEHSKTVLVFVEDVAASGGYMIALAGDEIIADPTSIVGSIGVVSGGFGFPELL 139

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV  +   +   K    PF       ++ ++ +    +  F+ +V   R I  +   
Sbjct: 140 KKIGVERRVYTAGENKVMLDPFQPEKQSDIEYLKTLQLDIHDVFIDMVKTRRGIRLNDNP 199

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL-GVDQSIRKIKDWNPPKNYWFCDLK 264
            L  G  WTG +  ++GL+D +G   E  ++ Y      + I   +     +        
Sbjct: 200 ELFSGLFWTGRKGFELGLVDGLGSMREEIKARYGKTARLELISGARGLFGRRLSGVDTAF 259

Query: 265 NLSISSLLEDTIPLMKQTKVQGLWA 289
           +            L++  + + LWA
Sbjct: 260 SAPSDIGSAAAAGLVETLEDRALWA 284


>gi|294783430|ref|ZP_06748754.1| protease IV [Fusobacterium sp. 1_1_41FAA]
 gi|294480308|gb|EFG28085.1| protease IV [Fusobacterium sp. 1_1_41FAA]
          Length = 578

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 14/231 (6%)

Query: 32  EDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLSSPGG 78
           E+++  V  I + G I +SQ             E I ++     +    A+++ ++SPGG
Sbjct: 299 ENSNNIVYVIPLEGDIVESQTEIFSGEAAINVNETIAKLNTAKENKKIKAVVLRVNSPGG 358

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           SA   + I   ++++ + KPV   +  +AAS GY IS  +N I     ++ GS+GV+   
Sbjct: 359 SALTSDIIAEKVKELASEKPVYVSMSSIAASGGYYISANANKIYVDRNTVTGSVGVVSVL 418

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                 L   GV+++ +         S  +    K    + +     Y  F+ +VS+ R 
Sbjct: 419 VDYSSLLKDNGVNVEKISEGEYSDLYSADT-FTEKKYNKIYNSNLKVYEDFLNVVSKGRK 477

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           I  +K   L++GR+WTG EA K GL D +GG       +           +
Sbjct: 478 IDKEKLKELAEGRVWTGTEAVKNGLADEIGGIYSTIYGVTEDNNIDDYTVV 528



 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 101/281 (35%), Gaps = 32/281 (11%)

Query: 3   FVLKKIKTRY--------VMLSLVTLTVVYFSWSSHVEDNSPHVARIAI----------- 43
           F++K+I + +        V+L+++ L V        V         I +           
Sbjct: 13  FIIKEIFSFFIKLFLFLLVILAIIGLIVQSIEEKPQVVIKDNAYVVIDLADSYKERLLTS 72

Query: 44  ---RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPV 99
                   +   L+E I+ IS DD  + +++ ++S   S    E +   +  ++   K V
Sbjct: 73  SLFEDNAINFYTLLENIKNISFDDKVSGVVLKINSNSLSYAQSEELAHELSMLRGADKKV 132

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSS 158
           I     +     YL S A  I + +  S   +I   F+  +    L DK GV    +   
Sbjct: 133 IAYFENVNRKNYYLASYADEIYMPSANSTSVNIYPYFREEFYTKKLSDKFGVKFNIIHVG 192

Query: 159 PMKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216
             K+         ++ +A +    ++D +Y  F+ +VS +R +  D    +        A
Sbjct: 193 DYKSYQENLAKDSMSKEAREDSTRILDLNYENFLDIVSLNRKLNRDDLDKIIKDGDLVAA 252

Query: 217 ---EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
              +     LID     + +   L   G    +  I+D+  
Sbjct: 253 SSIDLFSNKLIDKYLYWDNLVTLL---GGKDKLISIQDYAK 290


>gi|89056413|ref|YP_511864.1| peptidase S49 [Jannaschia sp. CCS1]
 gi|88865962|gb|ABD56839.1| peptidase S49 [Jannaschia sp. CCS1]
          Length = 278

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 15/248 (6%)

Query: 33  DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
            + P V+ I ++G I        +       IE+        A+ + ++SPGGS      
Sbjct: 21  SSDPRVSVIRLQGAIASGTRGGINDATFAPVIEKAFAKGKPKAVALVMNSPGGSPVQSAL 80

Query: 86  IFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           +   I+++   K  PV   V ++AAS GY ++CA++ I    +S+VGSIGV+        
Sbjct: 81  VAARIRRLAEEKDIPVHAFVEDVAASGGYWLACAADDIWVDPSSIVGSIGVVSAGFGFVE 140

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L KLGV  +   +   K+   PFS    + V+ ++ +    +  F+  V   R      
Sbjct: 141 ALGKLGVERRVHTAGENKSILDPFSPEKDEDVERLKSLQTDIHASFIDHVKTRRGDRLKD 200

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              +  G  WTG    ++GL D +         +  +      +     + PK      L
Sbjct: 201 HPEMFTGAFWTGTRGVELGLADGIAHL------VPKMKEVYGDKVTFTVHGPKKPLIPRL 254

Query: 264 KNLSISSL 271
               ++ L
Sbjct: 255 GAQVLADL 262


>gi|308049662|ref|YP_003913228.1| signal peptide peptidase SppA, 67K type [Ferrimonas balearica DSM
           9799]
 gi|307631852|gb|ADN76154.1| signal peptide peptidase SppA, 67K type [Ferrimonas balearica DSM
           9799]
          Length = 611

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 12/268 (4%)

Query: 33  DNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                +A +  +G I +                +    +D+   A+++ + S GGSAYA 
Sbjct: 320 QGDNQIAVVVAKGTILNGDQPAGTIGGVSTSRLLREARQDEKVKAVVLRVDSGGGSAYAS 379

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I + +  ++   KPVI  +  +AAS GY IS  ++ I A  T++ GSIG++      +
Sbjct: 380 EQIRQEVLALQAAGKPVIASMGSVAASGGYWISANADRIFAQPTTITGSIGIIGLITTFE 439

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                +GV    V ++ M         +     +++Q  +D  Y  F++LVS +R++P +
Sbjct: 440 DSAAAVGVYADGVGTTEMAGLSVL-RPLPDGFKRIVQQGLDKGYQDFIQLVSSARDLPLE 498

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFC 261
           +   ++ GRIW+G  A  +GL+D +G  E    S  AL   +    ++            
Sbjct: 499 QVDNIAQGRIWSGKAALDLGLVDEMGDLEAAITSAAALAQLEQYETRVIGPTLSPEQEML 558

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                +  + L        Q  +  L A
Sbjct: 559 QQIFGAAQAYLPQVETPAWQKVLNSLTA 586



 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 90/276 (32%), Gaps = 33/276 (11%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51
           +K+    V  +++ + +V  +              I + G + + +              
Sbjct: 23  RKVIVNLVFFAVLAVVIVAMTGDELEPVPDGGALVIKLDGILVEQKRPLDPIELITGQSS 82

Query: 52  ---------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102
                    +L+  IE  + DD  T +++      G     + I +A+Q  +     +  
Sbjct: 83  DEPKEILMADLLLAIEEAAADDRITGIVLKPGQLSGGLSKLQEIGKALQAFQQTGKPVIA 142

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
                    YL++  ++ I      +V   G      Y K  L KL ++    +    K+
Sbjct: 143 QAGWLDQGNYLVASFADEIQLNPGGVVSIDGFGIYQVYFKEALAKLKINTHLFRVGKYKS 202

Query: 163 EPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRI 212
              P+    ++ +A +    V+D  +  +V  V+++R+I               L     
Sbjct: 203 FAEPYTRDSMSDEAKEANIAVLDDLWGAYVTTVAQNRDIDPALLAPSLDSLNAQLEAVGG 262

Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                A   GL+D +    E+   L      +   +
Sbjct: 263 DMAKLALNTGLVDALMTDIEMRDRLMEEFGTEPDDE 298


>gi|226363309|ref|YP_002781091.1| S49 family peptidase [Rhodococcus opacus B4]
 gi|226241798|dbj|BAH52146.1| putative S49 family peptidase [Rhodococcus opacus B4]
          Length = 288

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 115/272 (42%), Gaps = 21/272 (7%)

Query: 31  VEDNSPHVARIAIRGQIED----------SQELIERIERISRDDSATALIVSLSSPGGSA 80
               +  V  + ++G I            ++ + E + R S    A A+ + ++SPGGS 
Sbjct: 21  GGSGAGVVPVVRLQGMIASGGAGFGRVLSAESVEEPLRRASTTHGAKAVALLINSPGGSP 80

Query: 81  YAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
              E I   I+++      PV+    ++ AS GY ++CA++ I A  TS+VGS+GV+   
Sbjct: 81  TQSEYIAARIRQLATEHELPVLAFCEDVVASGGYWLACAADEIYATATSVVGSVGVISAG 140

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                 +D+LG+  +   +   KA   PF     + VQ ++ + +  +  F   V   R 
Sbjct: 141 FGFSELIDRLGIERRLHSAGEAKARLDPFFAEKSEDVQWLEQIQEGIHDEFRDWVVGRRG 200

Query: 199 IPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
                    L DG +W G  A ++G++D +G   EV +  +            +   P+ 
Sbjct: 201 DKLKAAEAELFDGDVWLGRRAVELGIVDGIGTLREVVEKRFPDA-------TIEMTGPRR 253

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
             F  L  L  +S  + T  ++     +  W+
Sbjct: 254 SLFAKL-GLPAASWDDVTAAILGAANARVAWS 284


>gi|183221224|ref|YP_001839220.1| S49 family peptidase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911315|ref|YP_001962870.1| signal peptide peptidase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167775991|gb|ABZ94292.1| Signal peptide peptidase (protease IV) [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779646|gb|ABZ97944.1| Putative petidase S49, protease IV family [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 544

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 123/298 (41%), Gaps = 26/298 (8%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51
           +KI +R   +   T+        ++ E     V  + + G I                  
Sbjct: 249 RKIFSRVYPIVYQTVKEFSLFPKANKE-----VVILPLEGGITGGDYLHKNRENGKIEAF 303

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
            LI  ++ +  D    A+I+ +SSPGGSA+  E I + I ++K  KPV     +  AS G
Sbjct: 304 SLIPTLKALGEDKKIKAVILEISSPGGSAFYSEQIHQEILELKKTKPVTAYFKDTVASGG 363

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++ I A+   + GSIG +     ++    K  ++ ++V   P +   S F  ++
Sbjct: 364 YYIATAADYITASPVCITGSIGAVSIRANLQKLYKKFHLNKEAVGFYPFRDIHSEFQPLS 423

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
            ++V  ++  +      F + VSE R+IP  +   +  GR++      +  ++D +GG  
Sbjct: 424 KQSVLYLESQIKKIEGLFYKRVSEGRDIPLKELPNIGMGRVYLPT--TENKIVDSLGGLL 481

Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           +  + +      + I     +   +   +     + +   L   + +++      L +
Sbjct: 482 DAIEFVKEKLGGKGI-----YLTEELPSYNLKNKIPLLGGLLSELKILESLGEVSLLS 534



 Score = 38.4 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 70/217 (32%), Gaps = 8/217 (3%)

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
           ++     L +SL     +      I   ++ +++    I    +       L+   +N  
Sbjct: 75  KNPKIKTLDISLPPLEWTLSEFYEIRNELKAIRDSGKTIRMFAKEGGMGTLLLLTIANEA 134

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVNPKAVQMMQ 179
             A  S    +    +  +   FL   G+ +++  S P K+    F+  E + +A + ++
Sbjct: 135 YLAPESEFTVLLPSAEPMFFGKFLKTWGIEVQAFASGPYKSFAESFTRGEFSKEARKNLE 194

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
            ++ +     +  ++  +              + +  +    G+I  +  + E +     
Sbjct: 195 SLILNLRTLLLESLTNGKKS----LEPFFYKPMLSADDLLTEGVIHGIKTESEFFSE--D 248

Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
             +   +  I      +   F       +   LE  I
Sbjct: 249 RKIFSRVYPIVYQTVKEFSLFPKANKEVVILPLEGGI 285


>gi|254461803|ref|ZP_05075219.1| peptidase, family S49 [Rhodobacterales bacterium HTCC2083]
 gi|206678392|gb|EDZ42879.1| peptidase, family S49 [Rhodobacteraceae bacterium HTCC2083]
          Length = 265

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 116/260 (44%), Gaps = 19/260 (7%)

Query: 33  DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
            + P VA + + G I        + Q L   +++        A+ + ++SPGGS      
Sbjct: 9   KSEPVVAVVRLSGAIGMSGRGALNDQSLAPVLDKAFTRGKPDAVALQINSPGGSPVQSSL 68

Query: 86  IFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           I   I+++  +N  PVI  V ++AAS GY ++ A++ I A E+S++GSIGV+        
Sbjct: 69  IGARIRRLADENEIPVIAFVEDVAASGGYWLAAAADEIYADESSVLGSIGVISAGFGAHV 128

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL K G+  +   +   K+   PF+    + V  ++ +++  +  F+R V + R    DK
Sbjct: 129 FLAKQGIERRVYTAGKSKSMMDPFTPETEEDVARVKGMLEQIHTNFIRYVQKRRGEKLDK 188

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              L  G IW G  AK VGLID +       ++ +           K + P + +     
Sbjct: 189 GSELFTGDIWIGDVAKDVGLIDGIAHLVPAMKARFG-----DKVTFKRYGPKRGFMSRI- 242

Query: 264 KNLSISSLLEDTIPLMKQTK 283
                + +  D +  +++  
Sbjct: 243 ----GAQIATDALGGIEERA 258


>gi|254464567|ref|ZP_05077978.1| peptidase S49 [Rhodobacterales bacterium Y4I]
 gi|206685475|gb|EDZ45957.1| peptidase S49 [Rhodobacterales bacterium Y4I]
          Length = 279

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/264 (23%), Positives = 110/264 (41%), Gaps = 14/264 (5%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIV 71
            L +             P VA + + G I            L   +ER  R     A+ +
Sbjct: 9   ALYIGAMRIHLPFLKRQPLVAVVRLNGAIGMPGRGSLSDAALAPILERAFRKGKPAAVAL 68

Query: 72  SLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
            ++SPGGS      I   I+++      PV   V ++AAS GY ++ A++ I A  +S++
Sbjct: 69  EINSPGGSPVQSSLIGARIRRLAKELGIPVYAFVEDVAASGGYWLAAAADEIWADASSVL 128

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GS+GV+         L + GV  +   +   K+   PF   NP+ VQ ++ +++  +  F
Sbjct: 129 GSVGVISAGFGAHVLLARQGVERRVYTAGESKSMLDPFRPENPEDVQRLKVILNDIHANF 188

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           +  V+E R         L  G IW    A+++GLID +G  +   Q  +         + 
Sbjct: 189 IDHVTERRGAKLKNDENLFTGEIWLARRAEELGLIDGIGHLKPKMQERFG-----EKVRF 243

Query: 250 KDWNPPKNYWFCDLKNLSISSLLE 273
           + +   K +W      L+  +L  
Sbjct: 244 RRYGLKKPFWSRFGMRLAQDALAG 267


>gi|82699311|ref|YP_413885.1| Clp protease [Brucella melitensis biovar Abortus 2308]
 gi|237814870|ref|ZP_04593868.1| Na+/H+ antiporter NhaA [Brucella abortus str. 2308 A]
 gi|82615412|emb|CAJ10381.1| Clp protease:Peptidase U7:Na+/H+ antiporter NhaA [Brucella
           melitensis biovar Abortus 2308]
 gi|237789707|gb|EEP63917.1| Na+/H+ antiporter NhaA [Brucella abortus str. 2308 A]
          Length = 763

 Score =  110 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64
           L      ++              +  + + G I                   +E+   D 
Sbjct: 470 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 529

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122
            A A+ +S++SPGG+      I+R I+ +  +++K V   V ++AAS GY+I+ A + I+
Sbjct: 530 HAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 589

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A  +S+VGSIGV+         L K+GV  +   +   K    PF     + ++ ++ + 
Sbjct: 590 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 649

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              +  F+ +V E R         L  G  WTG  A  +GLID +G      +  Y    
Sbjct: 650 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 706

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291
                K+K   P +      L  + + S   +   +       GL       A+W
Sbjct: 707 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 758


>gi|15964602|ref|NP_384955.1| putative protease protein [Sinorhizobium meliloti 1021]
 gi|307309348|ref|ZP_07589011.1| peptidase S49 [Sinorhizobium meliloti BL225C]
 gi|307320084|ref|ZP_07599505.1| peptidase S49 [Sinorhizobium meliloti AK83]
 gi|15073780|emb|CAC45421.1| Probable proteinase [Sinorhizobium meliloti 1021]
 gi|306894299|gb|EFN25064.1| peptidase S49 [Sinorhizobium meliloti AK83]
 gi|306900217|gb|EFN30835.1| peptidase S49 [Sinorhizobium meliloti BL225C]
          Length = 288

 Score =  110 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 113/284 (39%), Gaps = 13/284 (4%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATA 68
                          +   +  I + G I           +   +   +E+      A A
Sbjct: 1   MAGFFRKLMPKRFRRDGVTIPAIRLHGAIMAGGSPLRPVLNLATVAPLLEKAFSVKEAPA 60

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAET 126
           + +S++SPGGS      I++ I+ +   K    +  V ++AAS GY+I+ A + I+A  T
Sbjct: 61  VAISINSPGGSPVQSRLIYQRIRDLAQEKRKRVLIFVEDVAASGGYMIALAGDEIIADPT 120

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           S+VGSIGV+         L K+GV  +   +   K    PF     + ++ ++ +    +
Sbjct: 121 SIVGSIGVVSGGFGFPDLLKKIGVERRVYTAGENKVVLDPFQPEKERDIEFLKGLQLEIH 180

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE-EVWQSLYALGVDQS 245
             F+++V   R         L  G  WTG   +++GL+D +G    EV +        + 
Sbjct: 181 DIFIQMVKSRRGSLLADHPDLFSGLFWTGQRGQELGLVDALGDIRGEVKKRYGEKARLEL 240

Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           I+  +     +         ++   +      L++  + + LWA
Sbjct: 241 IQPARSLFGRRQPGAAVAGAITGPLVASAAAGLVEAVEERALWA 284


>gi|300022742|ref|YP_003755353.1| peptidase S49 [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524563|gb|ADJ23032.1| peptidase S49 [Hyphomicrobium denitrificans ATCC 51888]
          Length = 429

 Score =  110 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/278 (20%), Positives = 119/278 (42%), Gaps = 16/278 (5%)

Query: 26  SWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVS 72
           S        S  +A + I G +                + + E++++ S D     +++ 
Sbjct: 55  SQRGPYRVTSNGIAIVPIIGSLVNRGAYIGASSGLTSYEGISEQLKKASTDSEVRGILLD 114

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           +++PGG A     +   I +++ +KPV+  V +MA SAGY I+ A++ I   +T ++GSI
Sbjct: 115 MNTPGGEAAGTFEVSNLIMEIRKKKPVVAMVADMACSAGYAIASAASQIYTTQTGMMGSI 174

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GV++ +      +   G+    + +   KAE +PF  ++       Q  ++  +  F+  
Sbjct: 175 GVVWVHFDRSLQMQNEGIKPTILHAGARKAEGNPFEPLSRVTKANFQAEIEKLHSLFIET 234

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL-YALGVDQSIRKIKD 251
           V + R    +  L  ++  ++ G +A K+GL D V   + V + +   +    +     +
Sbjct: 235 VLDGRPSLKEADLRATEAAVFMGQDAVKIGLADGVSTFDRVLEVMSQQITKLPAAPAGYE 294

Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
            NP +     +      +S  +     +   +  G+ A
Sbjct: 295 SNPKEKKAMTNQPAAEAASGTDQA--ALDAARADGVKA 330


>gi|332527653|ref|ZP_08403699.1| protease IV [Rubrivivax benzoatilyticus JA2]
 gi|332112056|gb|EGJ12032.1| protease IV [Rubrivivax benzoatilyticus JA2]
          Length = 604

 Score =  110 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 110/230 (47%), Gaps = 10/230 (4%)

Query: 44  RGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
            G I D +              + R   DD+  A+++ ++SPGGSA+  E I R ++  +
Sbjct: 318 EGMIVDGEAAPGTVGGLSTAALVRRARDDDAVRAIVLRVNSPGGSAFGSELIRRELELAR 377

Query: 95  N-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
              KPV+  + ++AAS G+ IS +++ IVA   ++ GSIGV+   P  +  L++LG+  +
Sbjct: 378 AAGKPVVVSMGDVAASGGFWISTSADEIVADPATITGSIGVIAVLPTAERALERLGLHTE 437

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
             ++S       P + ++ +  Q++Q  +   Y  F+  V+ +R    ++   +  GR+W
Sbjct: 438 GYRTSWAVDAYDPRAPLDARTEQVLQSSIGHVYGQFLERVATARKTTPERIDEIGQGRVW 497

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
           +GA+A+  GL+D  GG  +      A        +++            +
Sbjct: 498 SGAQARVRGLVDRTGGLRDALAVAAARAKLAPGYRVQYMEEMPGRAERLM 547



 Score = 60.0 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 81/252 (32%), Gaps = 34/252 (13%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS-----------------------QELIERIERISRDDS 65
                    V  +  +G I +                        ++L+  ++  + D  
Sbjct: 38  GPPPLADKTVLVLNPQGPIREQFSGSLRDNALQKVRGSDLEQTRLRDLLTALDAGATDAR 97

Query: 66  ATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
            T+ ++ L    G        +  A+ + +     +           Y ++  ++ +   
Sbjct: 98  ITSALLVLDDFAGAGLPTLREVAAAVDRFRAGGKKVVAWGSSYDQRQYYLAAHADEVWLH 157

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FSEVNPKAVQMMQDVV 182
               +   G   +  Y K  LD+LGV+   V++   K        S  +P+  Q  +++ 
Sbjct: 158 PMGGIEISGYGGRRTYFKDALDQLGVTAHVVRAGRFKNAAETLAASGPSPETEQADRELY 217

Query: 183 DSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
           D  +  +   +  +R +P              L+         A + GLID +  ++++ 
Sbjct: 218 DGLWADYAATIEHARRLPAGSLSRAIAELPERLAAAGGDAAKLAAREGLIDAMKTRDQMR 277

Query: 235 QSLYALGVDQSI 246
            +L A G     
Sbjct: 278 AALIARGERDGE 289


>gi|222085058|ref|YP_002543588.1| protease protein [Agrobacterium radiobacter K84]
 gi|221722506|gb|ACM25662.1| protease protein [Agrobacterium radiobacter K84]
          Length = 286

 Score =  110 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 60/288 (20%), Positives = 112/288 (38%), Gaps = 22/288 (7%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS----------QELIERIERISRDDSATA 68
                              +  + + G I               + + +E+     +A A
Sbjct: 1   MAGFFKRMIPKRFRKERVVIPVVRLSGAIASGGGPLRQSLNLAGISQALEKAFEMKAAPA 60

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAET 126
           + + ++SPGGS      I+  I+ +   K    +  V ++AAS GY+I+ A + I+A  T
Sbjct: 61  IALVVNSPGGSPVQSRMIYNRIRDLAQEKQKKVLVFVEDVAASGGYMIALAGDEIIADAT 120

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           S+VGSIGV+         L KLGV  +   +   K    PF     K ++ ++ +    +
Sbjct: 121 SIVGSIGVVSGGFGFPELLKKLGVERRVYTAGENKVILDPFQPEKEKDIEYLKSLQLEIH 180

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
             F+ +V E R         +  G  WTG    ++GLID +G   +  +  +        
Sbjct: 181 KVFIDMVRERRAGKLTDDDTVFSGLFWTGGRGLELGLIDGLGDMRQELKKRFG-----EK 235

Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL---WAVW 291
            K+     P++ +      +S++ +  D I     + +       A+W
Sbjct: 236 TKLVLVGTPRSLFGRRAPGVSLAGM--DGIGAGLASGLAQAAEEKALW 281


>gi|182419438|ref|ZP_02950690.1| periplasmic serine protease [Clostridium butyricum 5521]
 gi|237666922|ref|ZP_04526907.1| signal peptide peptidase SppA, 36K type [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376769|gb|EDT74341.1| periplasmic serine protease [Clostridium butyricum 5521]
 gi|237658121|gb|EEP55676.1| signal peptide peptidase SppA, 36K type [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 331

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 65/274 (23%), Positives = 129/274 (47%), Gaps = 18/274 (6%)

Query: 34  NSPHVARIAIRGQIE---------------DSQELIERIERISRDDSATALIVSLSSPGG 78
           +   V  + + G I+               + ++ +  I+ + + +S   +I+ ++SPGG
Sbjct: 54  SEEFVGVVKVEGTIQSSSGSDSIFSTPQGYNHKKTLSYIDSMIKSNSNKGIILYVNSPGG 113

Query: 79  SAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             Y  + ++  +++ K +  +PV T +   A S GY IS AS+ I A      GSIGV+ 
Sbjct: 114 GVYESDELYLKLKEYKEKTGRPVWTYMSSRACSGGYYISMASDKIYANRNCWTGSIGVIT 173

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
               VK   DKLG+    + S P KA  S   E+  +   ++Q +VD +Y  F  +V+E 
Sbjct: 174 SLVNVKGLYDKLGIEEIDITSGPNKAMGSSGREMTDEQRAILQSLVDEAYDQFAGIVAEG 233

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA-LGVDQSIRKIKDWNPP 255
           R++  +    ++DGR+++  +A ++GLID V   + + + +   +G D ++   +     
Sbjct: 234 RHMDIETVKPIADGRVYSANQALQLGLIDNVDTYDNMQKDMLDYIGSDVTVYTPEVQENV 293

Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
            +  F  ++ +   S  +     +++    GL  
Sbjct: 294 FSSLFSKVEGIKSKSDAQVISDYLEKAGNGGLMY 327


>gi|34764084|ref|ZP_00144963.1| Putative signal peptide peptidase sppA [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27886138|gb|EAA23435.1| Putative signal peptide peptidase sppA [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 263

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 1/202 (0%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
           +  E +E++     +D   A+++ ++SPGGSA   + I   ++++   KPV   +  +AA
Sbjct: 14  NVSETLEKLNIAKENDKIKAVVLRVNSPGGSALTSDIIAEKVKELAEEKPVYVSMSSVAA 73

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
           S GY IS  +N I     ++ GSIGV+   P     +   GV+I+ +             
Sbjct: 74  SGGYYISANANKIFVDRNTITGSIGVVSILPDFSKLITDNGVNIEKISDGEYSDLY-SVD 132

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
               K    + +     Y  F+ +VS+ R I  +K   +++GRIWTG EA K+GL D +G
Sbjct: 133 SFTEKKYNKIYNSNLKVYEDFLNVVSKGRKIDKEKLKTIAEGRIWTGDEAIKIGLADEIG 192

Query: 229 GQEEVWQSLYALGVDQSIRKIK 250
           G  E   +L           + 
Sbjct: 193 GLNETIYALAEDNDMDEYAIVI 214


>gi|323144007|ref|ZP_08078659.1| signal peptide peptidase SppA, 67K type [Succinatimonas hippei YIT
           12066]
 gi|322416210|gb|EFY06892.1| signal peptide peptidase SppA, 67K type [Succinatimonas hippei YIT
           12066]
          Length = 643

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 110/234 (47%), Gaps = 11/234 (4%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSAT 67
           ++         S+  +     +A I   GQI              ++  +  +  DD   
Sbjct: 340 MINYRKYLALKSTPEKLKDKRIAVIYGIGQISGFSNDVYAFTPDNILPLLNEVRNDDKIK 399

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAET 126
           A+++ ++SPGG+  A E I R + ++K   K VI  ++  AAS GY ++ A++ I+A  +
Sbjct: 400 AVVMYINSPGGAVKASEEIRRELMRLKELGKKVIVSMNGTAASGGYWVASAADQIIADSS 459

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           +L GSIGV          L+ +GV    V +       S  + ++    + M+  V+ +Y
Sbjct: 460 TLTGSIGVFSLALGAHDLLNHVGVYQDGVATHEFADA-SIANPLSENTKETMRLSVEHTY 518

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
             F+ LV++SR +     +  ++G+++ G EA+ +GLID +G   +   +   L
Sbjct: 519 DTFINLVAKSRRLSPANYISYAEGQVFLGDEAQNLGLIDDLGSLNDALNTAAKL 572



 Score = 60.4 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 91/266 (34%), Gaps = 37/266 (13%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------------------E 52
            + +          + S  +  + ++G I +S                            
Sbjct: 69  AVIIASGQEEITTVEQSAQILYLPLKGVISESPLASDDFSNLQRRINEQLTGSVTHELIA 128

Query: 53  LIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
           + + +   + D++   +I+ L+     S    + I  A+ KV+N    +T +    + + 
Sbjct: 129 IEKALNFAAEDNNLKLIILDLNDLSPMSLAVAKRIGNAVDKVRNAGKEVTALAYSYSQSA 188

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SE 169
           + I+   + I+      V   G+     Y K  L+ L V+    K+   K+   P+  ++
Sbjct: 189 FAIAAHCDKILLDTMGQVNLRGIGMSSLYYKDLLNTLKVTPYIFKAGHFKSAVEPYTRND 248

Query: 170 VNPKAVQMMQDVVDSSYHWFVRL-----VSESRNIPYDKTLVLSDGRIWTGAEA---KKV 221
           ++P       ++  + +  +++      V     +  D    + +  ++ G  A    + 
Sbjct: 249 MSPDVKAEYANLAANLWDEYIKELNVRKVLSRTIVLPDADKYVKELELYKGDTALMQLEN 308

Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIR 247
            L+D +  +E+   SL          
Sbjct: 309 NLVDELISREDYLLSLCKDYGTDKSD 334


>gi|111021003|ref|YP_703975.1| signal peptide peptidase [Rhodococcus jostii RHA1]
 gi|110820533|gb|ABG95817.1| possible signal peptide peptidase [Rhodococcus jostii RHA1]
          Length = 288

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 113/272 (41%), Gaps = 21/272 (7%)

Query: 31  VEDNSPHVARIAIRGQIED----------SQELIERIERISRDDSATALIVSLSSPGGSA 80
               +  V  + ++G I            ++ + E + R      A A+ + ++SPGGS 
Sbjct: 21  GGSGAGVVPVVRLQGMIASGGAGFGRVLSAESVEEPLRRAFTTHGAKAVALLINSPGGSP 80

Query: 81  YAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
              E I   I+++      PV+    ++ AS GY ++CA++ I A  TS+VGS+GV+   
Sbjct: 81  TQSEYIAARIRQLATEHELPVLAFCEDVVASGGYWLACAADEIYATATSVVGSVGVISAG 140

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                 +D+LG+  +   +   KA   PF     + VQ ++ + +  +  F   V   R 
Sbjct: 141 FGFSELIDRLGIERRLHSAGEAKARLDPFFAEKSEDVQWLEQIQEGIHDEFRDWVVGRRG 200

Query: 199 IPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
                    L +G +W G  A ++G++D +G   EV +  +            +   P+ 
Sbjct: 201 NKLKADGAELFNGDVWLGRRAVELGIVDGIGTLREVVEKRFPDATL-------EMTGPRR 253

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
             F  L  L  +S  E    ++     +  W+
Sbjct: 254 SLFAKL-GLPAASWDEVAAAIVGAASARVAWS 284


>gi|221640571|ref|YP_002526833.1| peptidase S49 [Rhodobacter sphaeroides KD131]
 gi|221161352|gb|ACM02332.1| Peptidase S49 [Rhodobacter sphaeroides KD131]
          Length = 250

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 109/251 (43%), Gaps = 14/251 (5%)

Query: 41  IAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
           I ++G I          Q L   IE+  R      + + ++SPGGS      I   I+++
Sbjct: 2   IRLQGVIASGPRGGLSDQGLAAVIEKAFRRGKPAGVALVINSPGGSPVQSSLIAARIRRL 61

Query: 94  KNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
            + K   V   V ++AAS GY ++CA + I   E+SLVGSIGV+F       F+ + G+ 
Sbjct: 62  ASEKGVRVHAFVEDVAASGGYWLACAGDEIWVDESSLVGSIGVIFSSFGFHEFMARNGIE 121

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
            +   +   K+   PF    P+ V+ ++ + +  +  F+  V  +R    D    L +  
Sbjct: 122 RRVHTAGRSKSLADPFLPEKPEDVERLRALQEPIHRAFIEHVKRNRGARLDLNADLFNAD 181

Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           +WTG EA ++GL D V       Q +Y         ++  +   + +      +L+  +L
Sbjct: 182 VWTGQEAVRLGLADGVAHLVPKLQEIYG-----DKVRLVPYGQRRPFLQRLGMSLAGQAL 236

Query: 272 LEDTIPLMKQT 282
            E     +   
Sbjct: 237 AEVENRALWAR 247


>gi|288917963|ref|ZP_06412322.1| signal peptide peptidase SppA, 36K type [Frankia sp. EUN1f]
 gi|288350618|gb|EFC84836.1| signal peptide peptidase SppA, 36K type [Frankia sp. EUN1f]
          Length = 692

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 105/251 (41%), Gaps = 2/251 (0%)

Query: 39  ARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
           A +   G +  +  +       +RD S  A +  + SPGGS  A + + R I++ +    
Sbjct: 372 AALPFGGPVLAADAVTAAFRAAARDSSVAAAVFRVDSPGGSYVASDVVRREIERFRATGR 431

Query: 99  V-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I  +  +AAS GY ++   ++IVA   +L GSIGV      V+  LDK+G+   +V +
Sbjct: 432 PVIVSMGAVAASGGYFVALGGDLIVANPGTLTGSIGVFGGKQVVRDLLDKVGIGFGAVAA 491

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                  SP           +++ +D  Y  FV  V+++R + + +   L+ GR+WTGA+
Sbjct: 492 GENALMMSPRQSFTEAERAKLEEFLDRVYADFVGKVAQARRMSHAEAHELARGRVWTGAD 551

Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
           A + GL+D +GG        +A               P  +         S         
Sbjct: 552 AHRHGLVDELGGLAHAIDLAWARAGLPAEETPRVRLTPKPSVLDRLRTPKSSEEPGAAAA 611

Query: 277 PLMKQTKVQGL 287
             +    V G+
Sbjct: 612 RTVTSLGVPGI 622



 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 89/200 (44%), Gaps = 7/200 (3%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           +E+++ + R +RDD A  L+  +++ G      + +  A+ + +    V     +     
Sbjct: 46  REVVDGLRRAARDDRAKVLVAHIAAGGMPLARVQEVRDAVAEFRASGGVTFAYADTFGEF 105

Query: 111 G-----YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           G     Y ++CA + I  A    VG  GV  + P+++  LD+LGVS++  +    K   +
Sbjct: 106 GGGTVAYYLACAFDEIWLAPPGDVGLTGVAMETPFLREALDRLGVSVEIGQRHEYKNAVN 165

Query: 166 P--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
                +  P   + +  +VDS     V  VS  R +  D+   + D    +G  A + GL
Sbjct: 166 TLVERDFTPAHREALGRIVDSCAEQVVAEVSARRGLSPDQVRRMIDDAPMSGRAALEAGL 225

Query: 224 IDVVGGQEEVWQSLYALGVD 243
           +D +G ++E +  +     +
Sbjct: 226 VDRIGYRDEAYDQVRTRARE 245


>gi|146278889|ref|YP_001169048.1| peptidase S49 [Rhodobacter sphaeroides ATCC 17025]
 gi|145557130|gb|ABP71743.1| peptidase S49 [Rhodobacter sphaeroides ATCC 17025]
          Length = 265

 Score =  109 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 62/258 (24%), Positives = 107/258 (41%), Gaps = 14/258 (5%)

Query: 34  NSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             P V  I ++G I          Q L   IE+  R      + + ++SPGGS      I
Sbjct: 10  KDPVVPVIRLQGVIATGARGGLSDQGLASLIEKAFRRGKPAGVALVINSPGGSPVQSSLI 69

Query: 87  FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
              I+++       V   V ++AAS GY ++CA + I   E+S+VGSIGV+F       F
Sbjct: 70  AARIRRLAEEHEVRVHAFVEDVAASGGYWLACAGDDIWVDESSIVGSIGVIFASFGFHDF 129

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           + + G+  +   +   K+   PF     + ++ ++ + +  +  F+  V  +R    D++
Sbjct: 130 MTRNGIERRVHTAGRSKSLADPFLPEKSEDIERLKALQEPIHRAFIDHVKRNRGARLDES 189

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             L +  IWTG EA ++GL D V       Q +Y         ++  +   +        
Sbjct: 190 ADLFNADIWTGQEAVRLGLADGVAHLVPKMQEIYG-----EKVRLVPYGQRRPLLQRLGM 244

Query: 265 NLSISSLLEDTIPLMKQT 282
           NL    L E     +   
Sbjct: 245 NLFGHVLSEIEDRSLWAR 262


>gi|189023636|ref|YP_001934404.1| Clp protease [Brucella abortus S19]
 gi|254688698|ref|ZP_05151952.1| Clp protease [Brucella abortus bv. 6 str. 870]
 gi|254696825|ref|ZP_05158653.1| Clp protease [Brucella abortus bv. 2 str. 86/8/59]
 gi|189029213|sp|Q2YMB3|NHAA_BRUA2 RecName: Full=Na(+)/H(+) antiporter nhaA; AltName:
           Full=Sodium/proton antiporter nhaA
 gi|189019208|gb|ACD71930.1| Clp protease [Brucella abortus S19]
          Length = 736

 Score =  109 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64
           L      ++              +  + + G I                   +E+   D 
Sbjct: 443 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 502

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122
            A A+ +S++SPGG+      I+R I+ +  +++K V   V ++AAS GY+I+ A + I+
Sbjct: 503 HAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 562

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A  +S+VGSIGV+         L K+GV  +   +   K    PF     + ++ ++ + 
Sbjct: 563 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 622

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              +  F+ +V E R         L  G  WTG  A  +GLID +G      +  Y    
Sbjct: 623 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 679

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291
                K+K   P +      L  + + S   +   +       GL       A+W
Sbjct: 680 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 731


>gi|86139080|ref|ZP_01057651.1| peptidase, family S49 [Roseobacter sp. MED193]
 gi|85824311|gb|EAQ44515.1| peptidase, family S49 [Roseobacter sp. MED193]
          Length = 290

 Score =  109 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 113/264 (42%), Gaps = 14/264 (5%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIV 71
            + +            SP V+ + + G I        +   L   +E         A+ +
Sbjct: 20  AIYIGAMMLRLPFVKKSPLVSVVRLSGAIGMSSRGSLNDATLAPVLEAAFSKGKPDAVAL 79

Query: 72  SLSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLV 129
            ++SPGGS      I   I+++   K  PV+  V ++AAS GY ++ A++ I A  +S+V
Sbjct: 80  EINSPGGSPVQSSLIGARIRRLAKEKDLPVLAFVEDVAASGGYWLAAAADEIWADASSIV 139

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+      +  L++ GV  +   +   K+   PF   NP+ V  ++ ++   +  F
Sbjct: 140 GSIGVISAGFGAQELLNRHGVERRVYTAGESKSMLDPFQAENPEDVARLKVLLGDIHDNF 199

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           +  V++ R    D +  L  G IW    A ++GLID +G  +      +         K+
Sbjct: 200 ITHVTDRRGDKLDSSEKLFTGEIWLAKRATELGLIDGIGHIKPTLIDRFG-----DKVKL 254

Query: 250 KDWNPPKNYWFCDLKNLSISSLLE 273
           + ++  K +       L+  +L  
Sbjct: 255 RRYSIKKPFLSRFGVALAQDALAG 278


>gi|34580537|ref|ZP_00142017.1| possible protease sohB [Rickettsia sibirica 246]
 gi|157828421|ref|YP_001494663.1| protease sohB [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933133|ref|YP_001649922.1| signal peptide peptidase [Rickettsia rickettsii str. Iowa]
 gi|229586670|ref|YP_002845171.1| Signal peptide peptidase SppA, 36K type [Rickettsia africae ESF-5]
 gi|238650916|ref|YP_002916772.1| signal peptide peptidase [Rickettsia peacockii str. Rustic]
 gi|28261922|gb|EAA25426.1| possible protease sohB [Rickettsia sibirica 246]
 gi|157800902|gb|ABV76155.1| possible protease sohB [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908220|gb|ABY72516.1| signal peptide peptidase [Rickettsia rickettsii str. Iowa]
 gi|228021720|gb|ACP53428.1| Signal peptide peptidase SppA, 36K type [Rickettsia africae ESF-5]
 gi|238625014|gb|ACR47720.1| signal peptide peptidase [Rickettsia peacockii str. Rustic]
          Length = 304

 Score =  109 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 113/265 (42%), Gaps = 18/265 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPG 77
           ++S   ++   +A + + G I            + L   IE+  +     AL + ++SPG
Sbjct: 30  FASVFGNSKEVIAVLRLSGVIGKVSTMQSGLTLESLNALIEKAFKIKKLKALCLIINSPG 89

Query: 78  GSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           GS    E I + I+ +  +N+  + + + +MAAS GY ++C+ + I A  +S++GSIGV+
Sbjct: 90  GSPVQSELIAKRIRDLAEENKIKIYSFIEDMAASGGYWLACSGDRIYALPSSVIGSIGVV 149

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                    ++KLG+  +       K+   PF  +N   +++++D+    Y  F+  V  
Sbjct: 150 SSGFGFHEAINKLGIERRVYTEGKNKSVLDPFKPINKDDLKIIKDLQKQVYEHFIEYVKT 209

Query: 196 SRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
            R     +   +  +G  W G  A   GLID +G    V +  +   +         +  
Sbjct: 210 RRAGKLTQQDEILFNGEFWAGQTALDYGLIDGIGDMYSVMKEKFGDNIKF------QYLC 263

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLM 279
            K  W      +    L ++    +
Sbjct: 264 AKQPWLKKKLGMGSKILTDNLANSL 288


>gi|254693181|ref|ZP_05155009.1| Clp protease [Brucella abortus bv. 3 str. Tulya]
          Length = 736

 Score =  109 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64
           L      ++              +  + + G I                   +E+   D 
Sbjct: 443 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 502

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122
            A A+ +S++SPGG+      I+R I+ +  +++K V   V ++AAS GY+I+ A + I+
Sbjct: 503 HAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 562

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A  +S+VGSIGV+         L K+GV  +   +   K    PF     + ++ ++ + 
Sbjct: 563 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 622

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              +  F+ +V E R         L  G  WTG  A  +GLID +G      +  Y    
Sbjct: 623 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 679

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291
                K+K   P +      L  + + S   +   +       GL       A+W
Sbjct: 680 --DKVKLKLIQPQRGLLGRKLPGIGMDSSSVEPAQIAAHLG-DGLLCVAEEKAIW 731


>gi|67459011|ref|YP_246635.1| Signal peptide peptidase SppA [Rickettsia felis URRWXCal2]
 gi|67004544|gb|AAY61470.1| Signal peptide peptidase SppA [Rickettsia felis URRWXCal2]
          Length = 304

 Score =  109 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 60/265 (22%), Positives = 116/265 (43%), Gaps = 18/265 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPG 77
           ++S   D+   +A + + G I            + L E IE+  +     AL + ++SPG
Sbjct: 30  FASVFGDSKEVIAVLRLSGVIGKVSTMQSGLTLESLNELIEKAFKIKKLKALCLIINSPG 89

Query: 78  GSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           GS    E I + I+ +  +N+  + + + +MAAS GY ++C+ + I A+ +S++GSIGV+
Sbjct: 90  GSPVQSELIAKRIRDLAKENKIKIYSFIEDMAASGGYWLACSGDWIYASYSSVIGSIGVV 149

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                    ++KLG+  +       KA   PF  +N + +++++++    Y  FV  V  
Sbjct: 150 SSGFGFHEAINKLGIERRVYTEGKNKAILDPFKPINKEDLKIIKNLQQQVYEHFVDYVKT 209

Query: 196 SRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
            R     +   +  +G  W G  A   GLID +G    + +  +   +         +  
Sbjct: 210 RRAGKLTQQDEILFNGEFWAGQTALDYGLIDGIGDMYSIMKEKFGDNIKF------QYLC 263

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLM 279
            K  W      +    L ++    +
Sbjct: 264 AKQPWLKKKLGMGSKILTDNFANSL 288


>gi|319407549|emb|CBI81199.1| protease [Bartonella sp. 1-1C]
          Length = 282

 Score =  109 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 113/274 (41%), Gaps = 19/274 (6%)

Query: 31  VEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSA 80
              N+  +  + ++G I                   +++      A A+ + ++SPGGS 
Sbjct: 12  FRSNTVQIPVVRLQGAIISSNSSISRTLSLARCASLLDKAFSYKKAPAVALIINSPGGSP 71

Query: 81  YAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
                IF+ I+ + N K    +T V ++AAS GY+I+CA + I +  +S++GSIGV+   
Sbjct: 72  VQSRLIFQRIRDLANEKNKQVLTFVEDVAASGGYMIACAGDEIFSDPSSIIGSIGVVSAS 131

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                 L K+GV  +   +   K    PF       V  ++ +    +  F+ LV E R 
Sbjct: 132 FGFPELLKKIGVERRVYTAGKNKVTLDPFQPEKKTDVDHLKSLQLEVHQTFIDLVKERRM 191

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
                   +  G  W+G +  ++GLID +G    V +  +      +  K++  +PPK+ 
Sbjct: 192 SKLSDDSNIFTGMFWSGKKGVELGLIDELGDIRSVIKKRFG-----NNAKLRLISPPKSL 246

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
               +     +      +  +     +   A+W 
Sbjct: 247 LSSKVPLGISADTAYTAVDGVMMAAEER--ALWQ 278


>gi|292572009|gb|ADE29924.1| Signal peptide peptidase SppA, 36K type [Rickettsia prowazekii
           Rp22]
          Length = 304

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 66/265 (24%), Positives = 116/265 (43%), Gaps = 18/265 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPG 77
           ++S   D+   VA + + G I            + L E IE+  +     AL + ++SPG
Sbjct: 30  FASVFGDSKEVVAVLRLSGVIGKVSTMQSGLTLESLNELIEKTFKIKKLKALCLIINSPG 89

Query: 78  GSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           GS    E I + I+ +  +N+  V + + +MAAS GY ++C+ + I A  +S++GSIGV+
Sbjct: 90  GSPVQSELIAKRIRDLAKENKIKVYSFIEDMAASGGYWLACSGDQIYALPSSVIGSIGVV 149

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                    ++KLG+  +       KA   PF  +N   +++++D+    Y  FV  V  
Sbjct: 150 SSGFGFHEAINKLGIERRVYTEGKNKAVLDPFKPINKDDLKIIKDLQKQVYEHFVEYVKN 209

Query: 196 SRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
            R     +   +  +G  W G  A   GLID +G    V +  +   +         +  
Sbjct: 210 RRAGKLTQQDEILFNGEFWAGQTALDYGLIDGIGDMYSVIKEKFGDNIKF------QYLC 263

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLM 279
            K  W      +    L+ED +  +
Sbjct: 264 AKQPWLKKKLGMRSKILIEDLVNTV 288


>gi|197121609|ref|YP_002133560.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter sp. K]
 gi|196171458|gb|ACG72431.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter sp. K]
          Length = 834

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 113/266 (42%), Gaps = 24/266 (9%)

Query: 38  VARIAIRGQIE---------------DSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
           +  + + G I                 ++ +   I R + D +  A+++ + S GG   A
Sbjct: 544 IQVVRVEGIIARGRSRADPLGADGVAGAETIAAEIHRAADDAAVRAIVLRIESGGGDGLA 603

Query: 83  GEAIFR-AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
            + I+R A++  +  KPVI  + ++AAS GYL++  ++ I+A  ++L GSIGV    P +
Sbjct: 604 SDLIWREAVRARRKGKPVIASMGDLAASGGYLVAVGADAILAERSTLTGSIGVFAAKPDL 663

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L KL +  ++ +        S      P    +++  + + Y  FV  V+E R +  
Sbjct: 664 SGLLAKLSIHPEAYQRGENARLVSVLKPWTPAERAVLEKQIGAFYRQFVARVAEGRRLTT 723

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
            +   ++ GR+WTG +A +  L+D +G   +  +             ++           
Sbjct: 724 AEVEAVAGGRVWTGQQALERKLVDRIGTLADAIRLARERIGLAPDDVVE--------VRR 775

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287
           +    +++ +    +    +  + GL
Sbjct: 776 EDGGGALARVAGRALTAAPEPPLAGL 801



 Score = 75.4 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 104/240 (43%), Gaps = 3/240 (1%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
            L+ R+E    D    AL+V +          E +   +  V+ RKPV+  +     +  
Sbjct: 327 TLVTRLEAARDDPEVGALLVRIGGLSLGGGRVEELRALLAAVRARKPVLAYLEG-GGTRE 385

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FSE 169
           Y ++ A+  I A   + +   G+     +++  L +LG++   VK+   K+   P     
Sbjct: 386 YWLATAATAIAAPPGAPLIVNGISTSQLFLRGGLARLGIAFDVVKAGAYKSAAEPLVRDA 445

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
            +P+A +  + V+D  +  FV  V+E+R +P ++   L D  ++T  EAK+ GL+D V  
Sbjct: 446 PSPEAREATEAVLDDVFGRFVAQVAEARRLPPERVRALVDQGLFTAEEAKEAGLVDAVAW 505

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
            +E+ +   A+   +   +      P+       +   I  +  + I    +++   L A
Sbjct: 506 PDELERWGRAVAGRRLFERGAYRPEPERLAQRWGRPAVIQVVRVEGIIARGRSRADPLGA 565


>gi|83854903|ref|ZP_00948433.1| peptidase, family S49 [Sulfitobacter sp. NAS-14.1]
 gi|83842746|gb|EAP81913.1| peptidase, family S49 [Sulfitobacter sp. NAS-14.1]
          Length = 265

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 109/260 (41%), Gaps = 19/260 (7%)

Query: 33  DNSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
            + P V+ + + G I            +   I++        A+++ +SSPGGS      
Sbjct: 9   ASRPTVSVVRLSGVIGGRTRGGLNDSGIGPAIDKAFNRGKPAAVVLEISSPGGSPVQSSL 68

Query: 86  IFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           I   I+++ + K +  I  V ++AAS GY ++ A++ I A  +S++GSIGV+        
Sbjct: 69  IGARIRRLADEKNIPVIAFVEDVAASGGYWLAAAADEIYADPSSVLGSIGVISASFGADE 128

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           F+ + GV  +   +   K+   PF    P+ V  ++ +++  +  F+  V+  R      
Sbjct: 129 FIQRHGVERRVYTAGQSKSMLDPFRPEKPEDVARLKQLLEDIHGNFIDHVTSRRGSKLSS 188

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              L  G +W    A ++GLID +G    + +  +         K   +   K       
Sbjct: 189 DTDLFTGEVWLAKRATELGLIDGIGHLRPMIKQRFG-----DKVKFNRYGTKKGLLSRF- 242

Query: 264 KNLSISSLLEDTIPLMKQTK 283
                + ++ D +  +++  
Sbjct: 243 ----GAQIIGDAVDSIEERA 258


>gi|88706603|ref|ZP_01104306.1| protease IV [Congregibacter litoralis KT71]
 gi|88699099|gb|EAQ96215.1| protease IV [Congregibacter litoralis KT71]
          Length = 598

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 72/275 (26%), Positives = 121/275 (44%), Gaps = 12/275 (4%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGS 79
           S    + P VA +  +G +              L   + + +      A+++ +++ GGS
Sbjct: 300 SRAASDLPKVAVVTAQGNMLPGDQPPGTIGSGSLSRLLRKTAERKGVEAIVLRVTTGGGS 359

Query: 80  AYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +A E I   I++++    PV+  +  +AAS GY I+ A++ I A  TSL GSIGV   +
Sbjct: 360 VFASEIIRAEIERIRKTGMPVVVSMGSVAASGGYYIATAADRIFATPTSLTGSIGVFAAF 419

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P V+  L K GV    + ++ +     P   +NP     +Q  VD  Y  F+ LVSESR+
Sbjct: 420 PTVERLLAKGGVQTDGLGTTELAGALRPDRALNPALADTLQQSVDHIYRQFLGLVSESRS 479

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           I       L+ GR+ +  +A + GLID +G  ++  +   AL        +    P  + 
Sbjct: 480 IDLVTLDALAQGRVLSARDALEAGLIDGLGSLDDAAKEAAALAGLDDDYAVISILPEFSS 539

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
               L    +S  +     +       GL A+  P
Sbjct: 540 SELLL--QQLSDRMGAGRLMTMPGLASGLSALLEP 572



 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/310 (14%), Positives = 100/310 (32%), Gaps = 39/310 (12%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------------- 51
           ++  ++ + +      S           +   G++ D +                     
Sbjct: 15  LIFIVLLVVLWMSFSGSPEPLPQRAALVLDPTGRVVDERSQIEAASLLFEQPAASRETLL 74

Query: 52  -ELIERIERISRDDSATALIVSLSSPGGSAYAGE----AIFRAIQKVKNRKPVITEVHEM 106
            +LI+ +E    DD   AL++     GG    G+     +  AI + +     +  V + 
Sbjct: 75  TDLIDSVELARSDDRIAALVLK---LGGLVSIGQSKTTELAEAIARFRETGKPVIAVGDY 131

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                Y ++  ++ ++      V   G  F   Y    LDKL V++   ++   K+   P
Sbjct: 132 FTQDQYRLAVEADTLLMHPFGAVALEGFSFYTNYFADALDKLSVTMHVFRAGDYKSIAEP 191

Query: 167 --FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--------GA 216
              ++++P   Q+ ++ +D  +  +   V   R +       L +               
Sbjct: 192 LLRNDMSPGERQITREWLDDLWDAYSSAVESRRGLEPGAVNALLNDFPARLRAVDGDGAR 251

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
            A + GL+D +  + +    L +L                 Y      + + S L +  +
Sbjct: 252 LALEAGLVDELLDRSQQNSHLVSLVGATDEDGSFQGVSFSRYVTRMRPSRAASDLPKVAV 311

Query: 277 PLMKQTKVQG 286
              +   + G
Sbjct: 312 VTAQGNMLPG 321


>gi|299141026|ref|ZP_07034164.1| signal peptide peptidase SppA, 67K type [Prevotella oris C735]
 gi|298577992|gb|EFI49860.1| signal peptide peptidase SppA, 67K type [Prevotella oris C735]
          Length = 588

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 120/266 (45%), Gaps = 17/266 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED---------------SQELIERIERISRDDSATALI 70
             +        H+A     G I D                 ++   +E +++DD   A++
Sbjct: 288 INADDTPVTGEHIAVYYAYGDIVDKASPQSIFQDDRQIVGNDMCRDLEDLAKDDDVKAVV 347

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + ++S GGSAYA E I+  I ++K  KPV+  +   AAS GY +S  +N IVA  T++ G
Sbjct: 348 IRVNSGGGSAYASEQIWHQISELKKVKPVVVSMSGAAASGGYYLSSNANWIVADPTTITG 407

Query: 131 SIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           SIG+   +         KL ++   VK++      +      P+ + ++Q+ V+  Y  F
Sbjct: 408 SIGIFGLFLDRSELYTKKLSINYAEVKTNRNSVFGASGHPFTPEQLSLLQNNVNRGYMLF 467

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
            + V+E R +  ++   ++ GR+W G +  K+ L+D +GG ++   +  A     +  + 
Sbjct: 468 KKRVAEGRKMTMEQVENIAQGRVWLGQDVIKLKLVDQLGGLDD-AIAKAAKLAKMNDYET 526

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDT 275
             +  P + W   L +      L + 
Sbjct: 527 ASYPSPLSTWEQLLGSYVGGDDLLNG 552



 Score = 95.8 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 98/284 (34%), Gaps = 31/284 (10%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTV----------VYFSWSSHVEDNSPHVARIAIRGQIEDS 50
           M+   K +    + L L  + +          +  S SS  +     V  + + G + + 
Sbjct: 1   MKDFFKNVFATMLGLFLFGIVMSFMGFMCLIGIIASSSSTTKIEDNSVLVLKLDGSMTEQ 60

Query: 51  QE-----------------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
           +E                  ++ I++   +D    + +     G      E I +A+   
Sbjct: 61  EEENMMNSLQGISSLSFEGTMKAIKKAKDNDKVAGIYLETGQFGADLAQAEEIEKALLDF 120

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           +     I    E  ++ GY ++  +N I   +  ++   G+  +  Y K  L K+G+   
Sbjct: 121 RKSGKWIIAYGENYSTLGYYLASTANKIYLNKDGMIEWSGIGGEKVYYKNLLAKVGIKFV 180

Query: 154 SVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
           + K    K+  E      ++    +  Q  +D  ++  +  V+++R++  D     +D  
Sbjct: 181 TTKVGKYKSAVEQLTADNISDADREQTQRYLDGWWNTILATVAKNRSLNKDSLNAYADRV 240

Query: 212 IWT--GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           I        +K  L+D +   +++   +           I    
Sbjct: 241 ITLEAPENMQKYKLVDGLIYNDQIADIVRKQLGIDKEDDINKLT 284


>gi|15892468|ref|NP_360182.1| protease sohB [Rickettsia conorii str. Malish 7]
 gi|15619624|gb|AAL03083.1| possible protease sohB [Rickettsia conorii str. Malish 7]
          Length = 304

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 113/265 (42%), Gaps = 18/265 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPG 77
           ++S   ++   +A + + G I            + L   IE+  +     AL + ++SPG
Sbjct: 30  FASVFGNSKEVIAVLRLSGVIGKVSTMQSGLTLESLNALIEKAFKIKKLKALCLIINSPG 89

Query: 78  GSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           GS    E I + I+ +  +N+  + + + +MAAS GY ++C+ + I A  +S++GSIGV+
Sbjct: 90  GSPVQSELIAKRIRDLAEENKIKIYSFIEDMAASGGYWLACSGDRIYALPSSVIGSIGVV 149

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                    ++KLG+  +       K+   PF  +N   +++++D+    Y  F+  V  
Sbjct: 150 SSGFGFHEAINKLGIERRVYTEGKNKSVLDPFKPINKDDLKIIKDLQKQVYEHFIEYVKT 209

Query: 196 SRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
            R     +   +  +G  W G  A   GLID +G    V +  +   +         +  
Sbjct: 210 RRAGKLTQQDEILFNGEFWAGQTALDYGLIDGIGDIYSVMKEKFGDNIKF------QYLC 263

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLM 279
            K  W      +    L ++    +
Sbjct: 264 AKQPWLKKKLGMGSKILTDNLANSL 288


>gi|86157564|ref|YP_464349.1| signal peptide peptidase A [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774075|gb|ABC80912.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 834

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 112/266 (42%), Gaps = 24/266 (9%)

Query: 38  VARIAIRGQIE---------------DSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
           +  + + G I                 ++ +   I R + D +  A+++ + S GG   A
Sbjct: 544 IQVVRVEGIIARGRSRPDPLGGDGVAGAESIAAEIHRAADDAAVRAIVLRIESGGGDGLA 603

Query: 83  GEAIFR-AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
            + I+R A++  +  KPVI  + ++AAS GYL++  ++ I+A  ++L GSIGV    P +
Sbjct: 604 SDLIWREAVRARRKGKPVIASMGDLAASGGYLVAVGADAILAERSTLTGSIGVFAAKPDL 663

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L KL +  ++ +        S           +++  + + Y  FV  V+E R +  
Sbjct: 664 SGLLAKLSIHPEAYQRGENARLASVLKPWTAAERAVLEKQISAFYRQFVARVAEGRRLTA 723

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
            +   ++ GR+WTG +A +  L+D +G   +  +         +   ++           
Sbjct: 724 AEVEAVAGGRVWTGQQALERRLVDRIGTLADAIRLARERAGIAADDVVE--------VRR 775

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287
                +++ +    +    +  + GL
Sbjct: 776 ADGGGALARVAGRALAAAPEPPLAGL 801



 Score = 70.0 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 93/212 (43%), Gaps = 3/212 (1%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
            L+ R+E    D    AL+V +          E +   +  V+ RKPV+  +     +  
Sbjct: 327 TLVTRLEAARDDPEVGALLVRIGGLPLGGGRVEELRALLAAVRARKPVLAYLEG-GGTRE 385

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FSE 169
           Y ++  +  I A   + +   G+     +++  L +LG++   VK+   K+   P     
Sbjct: 386 YWLATGATAIAAPPGAPLIVNGISTSQLFLRGGLARLGIAFDVVKAGAYKSAAEPLVRDA 445

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
            +P+A +  + V+D  +  FV  V+E+R +P ++   L D  ++   EAK+ GL+D+V  
Sbjct: 446 PSPEAREATEAVLDDVFGRFVAQVAEARRLPPERVRALVDQGLFGAEEAKEAGLLDLVAW 505

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
            +E+ Q   A+   +   +      P+     
Sbjct: 506 PDELEQWGRAVAGRRLFERGAYRPEPERLAQR 537


>gi|154245323|ref|YP_001416281.1| peptidase S49 [Xanthobacter autotrophicus Py2]
 gi|154159408|gb|ABS66624.1| peptidase S49 [Xanthobacter autotrophicus Py2]
          Length = 295

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 67/267 (25%), Positives = 113/267 (42%), Gaps = 14/267 (5%)

Query: 36  PHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           P V  + + G I                 + +++     SA A+ + ++SPGGS      
Sbjct: 26  PVVPVVRLSGAIGMQTTPFARSLSLAGTAQALDKAFAMKSAPAVALLINSPGGSPVQSHL 85

Query: 86  IFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           IFR I+ +  +  K V   V + AAS GY+I+CA++ I A   S+VGSIGV+        
Sbjct: 86  IFRRIRALAEEKEKHVFAFVEDAAASGGYMIACAADEIFADPCSIVGSIGVVTAGFGFDK 145

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI-PYD 202
            ++KLGV  +   +   K    PF    P+ V+ +  ++   +  FV LV   R+     
Sbjct: 146 AIEKLGVERRVYTAGERKVTLDPFRPTRPEDVERLDVLLKELHTVFVDLVRSRRSDALPA 205

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               L  G  W G +A  +GL+D +G    + ++ Y   V   + +      P+      
Sbjct: 206 DDESLFSGEFWLGTQAAGLGLVDGLGDVRSILKARYGEEVRMPLVQSSSGLIPRRPGGFG 265

Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWA 289
              L+ S   +     M   + + LW+
Sbjct: 266 A-ALAGSLASQAADGAMAAVEERALWS 291


>gi|260545864|ref|ZP_05821605.1| clp protease [Brucella abortus NCTC 8038]
 gi|260754175|ref|ZP_05866523.1| Na+/H+ antiporter NhaA [Brucella abortus bv. 6 str. 870]
 gi|260761219|ref|ZP_05873562.1| Na+/H+ antiporter NhaA [Brucella abortus bv. 2 str. 86/8/59]
 gi|260097271|gb|EEW81146.1| clp protease [Brucella abortus NCTC 8038]
 gi|260671651|gb|EEX58472.1| Na+/H+ antiporter NhaA [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674283|gb|EEX61104.1| Na+/H+ antiporter NhaA [Brucella abortus bv. 6 str. 870]
          Length = 723

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64
           L      ++              +  + + G I                   +E+   D 
Sbjct: 430 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 489

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122
            A A+ +S++SPGG+      I+R I+ +  +++K V   V ++AAS GY+I+ A + I+
Sbjct: 490 HAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 549

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A  +S+VGSIGV+         L K+GV  +   +   K    PF     + ++ ++ + 
Sbjct: 550 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 609

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              +  F+ +V E R         L  G  WTG  A  +GLID +G      +  Y    
Sbjct: 610 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 666

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291
                K+K   P +      L  + + S   +   +       GL       A+W
Sbjct: 667 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 718


>gi|330945618|gb|EGH47112.1| peptidase S49, SppA [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 262

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 8/207 (3%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61
             K        V + V    +       S H A I ++G I D     ++ ++  +++  
Sbjct: 49  FFKLLTFAFLFVAVIVPMLDFEGGTSRRSSHTALIDVQGVIADKEAASAENIVTALQKAF 108

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118
            D+    +I+ ++SPGGS      ++  I++++  KP I     +    AS  Y I+ A+
Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRATKPDIKVYAVITDLGASGAYYIASAA 168

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I A + SLVGSIGV          +DKLGV  ++  S   KA   PF        Q  
Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL 205
           Q V+D+++  F+  V + R        
Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKE 255


>gi|261213422|ref|ZP_05927703.1| Na+/H+ antiporter NhaA [Brucella abortus bv. 3 str. Tulya]
 gi|260915029|gb|EEX81890.1| Na+/H+ antiporter NhaA [Brucella abortus bv. 3 str. Tulya]
          Length = 723

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64
           L      ++              +  + + G I                   +E+   D 
Sbjct: 430 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 489

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122
            A A+ +S++SPGG+      I+R I+ +  +++K V   V ++AAS GY+I+ A + I+
Sbjct: 490 HAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 549

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A  +S+VGSIGV+         L K+GV  +   +   K    PF     + ++ ++ + 
Sbjct: 550 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 609

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              +  F+ +V E R         L  G  WTG  A  +GLID +G      +  Y    
Sbjct: 610 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 666

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291
                K+K   P +      L  + + S   +   +       GL       A+W
Sbjct: 667 --DKVKLKLIQPQRGLLGRKLPGIGMDSSSVEPAQIAAHLG-DGLLCVAEEKAIW 718


>gi|313116931|ref|YP_004038055.1| ClpP class periplasmic serine protease [Halogeometricum borinquense
           DSM 11551]
 gi|312294883|gb|ADQ68919.1| ClpP class periplasmic serine protease [Halogeometricum borinquense
           DSM 11551]
          Length = 304

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 59/265 (22%), Positives = 110/265 (41%), Gaps = 21/265 (7%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWS---SHVEDNSPHVARIAIRGQIEDSQ--ELIERIE 58
                    +++ ++ L V                  VA + + G I      E+I+ + 
Sbjct: 5   SFSNFGRVLLVVGVIGLLVGAAVAPNVWERATGPDGTVAVVEMHGTITGDSATEVIDNLR 64

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118
              ++DS  A+++ ++SPGG+A A E ++ A+++ +   PV+  V  MAAS GY ++  +
Sbjct: 65  EARQNDSIRAVVLDINSPGGAASASEQLYLAVKRTQQEMPVVVSVTGMAASGGYYMTAPA 124

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + +     S VGS+GV    P  +    +       + + P K   S  +EV        
Sbjct: 125 DEVYVTPASTVGSVGVRAVVPGSQAPSGE-------ILTGPDKGSTSTNAEV-------- 169

Query: 179 QDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           +  V++    FV  V E R+         LS  ++++GA   K+GL D +GG +   Q  
Sbjct: 170 RRRVEALRRAFVGSVMEERSESLKLTEEELSYAKVYSGARGVKLGLADSIGGIDTAIQGA 229

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCD 262
                      ++  +P +N     
Sbjct: 230 ADRAGLSDYAIVRMESPKQNPLSQL 254


>gi|316932585|ref|YP_004107567.1| peptidase S49 [Rhodopseudomonas palustris DX-1]
 gi|315600299|gb|ADU42834.1| peptidase S49 [Rhodopseudomonas palustris DX-1]
          Length = 300

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 19/277 (6%)

Query: 29  SHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPGGS 79
                + P V  + + G I              + + ++R     +A A+ ++++SPGGS
Sbjct: 24  ERFRRDIPVVPVVRLSGTIGAVTPLRPGLTLASVAKLLDRAFSTRNAKAVALAINSPGGS 83

Query: 80  AYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
                 I+  I+ +   K  PV   V ++AAS GY+I+CA++ I    +S++GSIGV+  
Sbjct: 84  PVQSRLIYLRIRALAAEKKLPVYAFVEDVAASGGYMIACAADEIYCDPSSILGSIGVVGG 143

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
               +  + K+GV  +   +   KA+  PF   +P+ V  ++ +    +  F+ LV ESR
Sbjct: 144 GFGFQELIRKIGVERRLYTAGERKAQLDPFLPEDPQEVARLKVLQQEIHALFIALVKESR 203

Query: 198 NIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
                 +   L  G  W GA +  +GL D +G    V +  +   V   +      +PP 
Sbjct: 204 GARLKGEESQLFTGEYWAGATSVSLGLADSIGDLRAVLREKFGDKVRTPL-----ISPPT 258

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGL--WAVW 291
                  +    +    D +  + ++ +  L   A+W
Sbjct: 259 GLLANLTRKSGGAEAALDGVAALPESMISALETRAIW 295


>gi|48477283|ref|YP_022989.1| putative signal peptide peptidase SppA [Picrophilus torridus DSM
           9790]
 gi|48429931|gb|AAT42796.1| putative signal peptide peptidase SppA [Picrophilus torridus DSM
           9790]
          Length = 247

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 109/238 (45%), Gaps = 3/238 (1%)

Query: 37  HVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           ++A +   G I        +   + I        LI+ ++S GG A A E ++  +  V 
Sbjct: 2   YIATLNFSGVINGGSISRYLPVFDYIKSKKKIAGLILIINSGGGDANATEILYNKLLDVS 61

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
             KPV   +  + AS  Y ++CA+  I A  TS+VGSIGV+   P V  FL+ LG+ ++ 
Sbjct: 62  KSKPVYALIEGIGASGAYWLACAARKIYAMSTSIVGSIGVISISPDVSDFLENLGIKMRI 121

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
            K    K   SPF  +N    ++ +++++  +  F   V + RN+  D+    + G +++
Sbjct: 122 NKIGKYKDINSPFRHMNEDENEIFKELLNDVFLRFREEVKKRRNLTDDEINDTATGLVFS 181

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
             +  +  LID +G  + V  ++          KIK+  P K +          +SL+
Sbjct: 182 ARQGLERKLIDGIGTFDTVLNAIKNDNNI-KTAKIKNLTPRKPFVQRITGMAFDASLI 238


>gi|254486961|ref|ZP_05100166.1| peptidase S49 [Roseobacter sp. GAI101]
 gi|214043830|gb|EEB84468.1| peptidase S49 [Roseobacter sp. GAI101]
          Length = 265

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 19/257 (7%)

Query: 36  PHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           P VA I + G I            +   I++        A+ + +SSPGGS      I  
Sbjct: 12  PTVAVIRLSGVIGGRARGGLNDGGIGPAIDKAFSRGKPVAVALEISSPGGSPVQSSLIGA 71

Query: 89  AIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
            I+++ + K  PVI  V ++AAS GY ++ A++ + A  +S+VGSIGV+         + 
Sbjct: 72  RIRRLADEKKIPVIAFVEDVAASGGYWLAAAADEVYADPSSVVGSIGVISSSFGASELIS 131

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           + G+  +   +   K+   PF    P+ V+ ++ +++  +  F+  V   R       + 
Sbjct: 132 RHGIERRVYTAGQSKSMLDPFRPEKPEDVERLKHILNDIHTNFIDHVKARRGDKLAPDVD 191

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           L  G IW    A ++GLID +G      +  +         K   +   K          
Sbjct: 192 LFTGEIWLAKRAAELGLIDGIGHLRPFLKERFG-----DKVKFARYGTKKGLLSRF---- 242

Query: 267 SISSLLEDTIPLMKQTK 283
             + ++ D +  +++  
Sbjct: 243 -GAQIIGDAVDSIEERA 258


>gi|297247797|ref|ZP_06931515.1| NhaA family Na+:H+ antiporter [Brucella abortus bv. 5 str. B3196]
 gi|297174966|gb|EFH34313.1| NhaA family Na+:H+ antiporter [Brucella abortus bv. 5 str. B3196]
          Length = 763

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 114/295 (38%), Gaps = 24/295 (8%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64
           L      ++              +  + + G I                   +E+   D 
Sbjct: 470 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 529

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122
            A A+ +S++SPGG+      I+R I+ +  +++K V   V ++AAS GY+I+ A + I+
Sbjct: 530 HAPAVAISINSPGGAPVQLRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 589

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A  +S+VGSIGV+         L K+GV      +   K    PF     + ++ ++ + 
Sbjct: 590 ADPSSIVGSIGVVSASFGFPELLKKIGVERHVYTAGSNKVTLDPFQPEKAEDIERLKALQ 649

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              +  F+ +V E R         L  G  WTG  A  +GLID +G      +  Y    
Sbjct: 650 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 706

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291
                K+K   P +      L  + + S   +   +       GL       A+W
Sbjct: 707 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 758


>gi|15604263|ref|NP_220779.1| protease SohB [Rickettsia prowazekii str. Madrid E]
 gi|3860955|emb|CAA14855.1| POSSIBLE PROTEASE SOHB (sohB) [Rickettsia prowazekii]
          Length = 308

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 66/265 (24%), Positives = 116/265 (43%), Gaps = 18/265 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPG 77
           ++S   D+   VA + + G I            + L E IE+  +     AL + ++SPG
Sbjct: 34  FASVFGDSKEVVAVLRLSGVIGKVSTMQSGLTLESLNELIEKTFKIKKLKALCLIINSPG 93

Query: 78  GSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           GS    E I + I+ +  +N+  V + + +MAAS GY ++C+ + I A  +S++GSIGV+
Sbjct: 94  GSPVQSELIAKRIRDLAKENKIKVYSFIEDMAASGGYWLACSGDQIYALPSSVIGSIGVV 153

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                    ++KLG+  +       KA   PF  +N   +++++D+    Y  FV  V  
Sbjct: 154 SSGFGFHEAINKLGIERRVYTEGKNKAVLDPFKPINKDDLKIIKDLQKQVYEHFVEYVKN 213

Query: 196 SRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
            R     +   +  +G  W G  A   GLID +G    V +  +   +         +  
Sbjct: 214 RRAGKLTQQDEILFNGEFWAGQTALDYGLIDGIGDMYSVIKEKFGDNIKF------QYLC 267

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLM 279
            K  W      +    L+ED +  +
Sbjct: 268 AKQPWLKKKLGMRSKILIEDLVNTV 292


>gi|41615105|ref|NP_963603.1| hypothetical protein NEQ315 [Nanoarchaeum equitans Kin4-M]
 gi|40068829|gb|AAR39164.1| NEQ315 [Nanoarchaeum equitans Kin4-M]
          Length = 256

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 13/246 (5%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIE 58
           ++ ++K+      ++ ++  + +Y            +VA I I   I     +++I+ ++
Sbjct: 4   IKDIIKRNSWILFLVGIILFSHIYSIL------TKGNVAVIYIDKPITSDFAEKVIDFLK 57

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118
                    A+++ + SPGG+      I + + ++   K  I+ + +   SA Y I+  +
Sbjct: 58  EAKD---YKAIVLYIDSPGGAPEPTYRIIKYLDRINKTK--ISYIAQYGTSASYWIATHT 112

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           N I A E S VGS+GVL     +   L KLGV   S      K   +P   ++    Q  
Sbjct: 113 NKIFANELSFVGSVGVLIGKIDLSGLLSKLGVKYYSFSKGKYKEFSNPLLPLDNYTKQYY 172

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
            ++ D  Y++F+  V E R+I  +    + +  I+ G EAKK GLID +G  ++V   L 
Sbjct: 173 NELADKLYNFFLTDVLEHRDIKKECLSKVKESTIFLGIEAKKCGLIDYIGTMDDVKAYLE 232

Query: 239 ALGVDQ 244
                +
Sbjct: 233 KTLKIK 238


>gi|219852684|ref|YP_002467116.1| signal peptide peptidase SppA, 36K type [Methanosphaerula palustris
           E1-9c]
 gi|219546943|gb|ACL17393.1| signal peptide peptidase SppA, 36K type [Methanosphaerula palustris
           E1-9c]
          Length = 265

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 13/215 (6%)

Query: 37  HVARIAIRGQI----------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
           HV  +   G +            S+ +   +   + D    A+++ ++SPGG+  A E I
Sbjct: 49  HVTVVRAEGTLVTGLVDSSDSTGSEVIGNALRAAADDPMTDAIVLRVNSPGGTPSAAEEI 108

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
              I+  K +KPV+  + ++A SA YLIS  ++ I A   +   +IG ++ +     ++ 
Sbjct: 109 IGDIEYAKTKKPVVVSMGDIATSAAYLISVHADRIYANPDTFTANIGTIWTFSNDSEWMK 168

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           K G  ++ VKS  MK   S    +  +     Q +V++S+  F+  V   R +       
Sbjct: 169 KKGYQVEVVKSGEMKDMGSSSRSLTTEERDYAQQLVNASFESFISDVLSHRPVNRTAIE- 227

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
             DGR+  G EA  +GL+D +G   +   +   L 
Sbjct: 228 --DGRVIRGQEALDLGLVDKLGNLNDAEDAATDLA 260


>gi|146339073|ref|YP_001204121.1| putative serine protease SohB [Bradyrhizobium sp. ORS278]
 gi|146191879|emb|CAL75884.1| putative serine protease SohB [Bradyrhizobium sp. ORS278]
          Length = 288

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 113/268 (42%), Gaps = 15/268 (5%)

Query: 34  NSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGE 84
            +P V  + + G I     L          + +ER     +A A+ + ++SPGGS     
Sbjct: 11  GAPVVPVVRLSGVIGAVTPLRPGLTLAGVAKMLERAFSMRNAKAVALVINSPGGSPVQSR 70

Query: 85  AIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            I+  I+++   K  PV+  V ++AAS GY+I+CA + I    +S+VGSIGV+     ++
Sbjct: 71  QIYLRIRQLAAEKKLPVLVFVEDVAASGGYMIACAGDEIFCDPSSIVGSIGVVGGSFGLQ 130

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             + ++G+  +   +   KA   PF   NP  V  ++ +    +  F+ LV ESR     
Sbjct: 131 DLIKRIGIERRLYTAGEHKAMLDPFLPENPDDVARLKKIQREIHALFISLVKESRTNRLK 190

Query: 203 KTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                L  G  W G  A  +GL D +G    V ++ +    D+    +            
Sbjct: 191 GADDLLFTGEYWAGDTAVTLGLADAIGDLRAVLRARF---GDKVAMPVVAPAGGLLSGLL 247

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289
             K+    SL    + +      + L +
Sbjct: 248 GRKSAGAGSLTAQGLGIGWSGLAEELIS 275


>gi|150395686|ref|YP_001326153.1| peptidase S49 [Sinorhizobium medicae WSM419]
 gi|150027201|gb|ABR59318.1| peptidase S49 [Sinorhizobium medicae WSM419]
          Length = 288

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 59/266 (22%), Positives = 111/266 (41%), Gaps = 13/266 (4%)

Query: 37  HVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
            +  I + G I           +   +   +E+      A A+ +S++SPGGS      I
Sbjct: 19  TIPAIRLHGAIMAGGSPLRPVLNLATVAPLLEKAFSVKDAPAVAISINSPGGSPVQSRLI 78

Query: 87  FRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           ++ I+ +   K    +  V ++AAS GY+I+ A + I+A  TS+VGSIGV+         
Sbjct: 79  YQRIRDLAQEKRKRVLIFVEDVAASGGYMIALAGDEIIADPTSIVGSIGVVSGGFGFPDL 138

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K+GV  +   +   K    PF     + ++ ++ +    +  F+++V   R       
Sbjct: 139 LKKIGVERRVYTAGENKVLLDPFQPEKERDIEFLKGLQLEIHDIFIQMVKSRRGSLLADH 198

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQE-EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
             L  G  WTG   +++GL+D +G    EV +        + I+  +     +       
Sbjct: 199 PDLFSGLFWTGQRGQELGLVDSLGDMRSEVRKRYGEKARLELIQPARSLFGRRQPGAAVA 258

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289
             ++   +      L+   + + LWA
Sbjct: 259 GAIAAPLVASAAAGLVDTLEERALWA 284


>gi|78485025|ref|YP_390950.1| peptidase S49 [Thiomicrospira crunogena XCL-2]
 gi|78363311|gb|ABB41276.1| protein C. Serine peptidase. MEROPS family S49 [Thiomicrospira
           crunogena XCL-2]
          Length = 463

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 100/224 (44%), Gaps = 14/224 (6%)

Query: 36  PHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSPGGSAYA 82
            ++  I I G + +              Q++ E  + +  DD+   +++   SPGGSA  
Sbjct: 70  ENIGVIDISGPMVNRPIRGFCSNGPAAYQDIKEDFDELMADDNIKTIVLRCDSPGGSASG 129

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
              +   I   + +K +I  V +MA SA Y I+ A + I  + TS +GSIGV+  +    
Sbjct: 130 VMDLSDHIFNSRGQKKIIAIVDDMAYSAMYAIASACDEIYVSRTSGIGSIGVVTYHIDQS 189

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
            F  K+GV ++ + +   K   +P   ++ +A   MQ  +D  Y  FV  V+ +RN+   
Sbjct: 190 EFDKKIGVKVEFIYAGDKKVAGNPHEPLSDQARTDMQTEIDRLYDIFVATVARNRNMDEQ 249

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
           K      G  + G     VGL D +G   EV  +L +   +   
Sbjct: 250 KVRDTQAGCFY-GDTGIAVGLADKLGTFSEVIGNLVSDSGNVDD 292


>gi|212223529|ref|YP_002306765.1| Hypothetical endopeptidase IV [Thermococcus onnurineus NA1]
 gi|212008486|gb|ACJ15868.1| Hypothetical endopeptidase IV [Thermococcus onnurineus NA1]
          Length = 335

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 112/239 (46%), Gaps = 4/239 (1%)

Query: 32  EDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
            + +  +A + I G I++     +I  +  I+ +DS   +++ + SPGG       I+  
Sbjct: 85  PEGNTTIAIVPIFGLIDEYTALSIIPVLRDIAGNDSIGGVVLWIESPGGYVGPVREIYAT 144

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           ++K+   KPV+     +AAS GY I+  +  I+A   + VGSIGV++ +  ++   +  G
Sbjct: 145 VKKLNLIKPVVAYTGGIAASGGYYIAVGAEEIIADPLAEVGSIGVIYVHYNLQQNYEMNG 204

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           + ++  K+ P K   + +  +  +   M+ + VD+ +  F++ VS  R +  ++T   + 
Sbjct: 205 IKVEVFKTGPYKDMGAEWRGLTEEEKAMITESVDTYFQAFLQAVSSGRGMSLNETKEYAT 264

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
           GR W         L+D  G  +   + L  +    +  +I  ++   +  F    + ++
Sbjct: 265 GRTWFAMN-VTGSLVDETGDLDYAVKVLGEMLNVTN-PRIVIYSGRSSSNFAIFGSTAL 321


>gi|292655044|ref|YP_003534941.1| proteinase IV-like [Haloferax volcanii DS2]
 gi|291370747|gb|ADE02974.1| proteinase IV-like, transmembrane [Haloferax volcanii DS2]
          Length = 333

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 118/292 (40%), Gaps = 22/292 (7%)

Query: 14  MLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQIE---------------DSQELIE 55
           +L  +   V        +  +      VA +A+ G I                 + +++E
Sbjct: 42  LLLFIGTVVAALRVGGRLAASAFPDYDVAEVAVEGPISRDGGGGPVPGRGGGTPADDIVE 101

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
           +++  + DDS  AL+V L++PGG     + I RA+       P +    +  AS GY I+
Sbjct: 102 QVDAAADDDSVDALLVKLNTPGGEVLPSDDIRRAVADF--DGPTVAYATDTCASGGYWIA 159

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
              + + + + S+VGSIGV+          DK+G+S +   +   K       E      
Sbjct: 160 SGCDELWSHDVSVVGSIGVIGSSVNASELADKVGLSYERFAAGKYKDAGMALKEPTEDER 219

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           + +Q ++D  Y  FV  V+E R++        ++ R++ G EA ++GL+D +G +++V  
Sbjct: 220 EYLQGLIDDYYDDFVERVAEGRDMDPQVVRD-TEARVYLGEEAHELGLVDSLGSRDDVED 278

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
            L      +    ++++ P           +  ++               G 
Sbjct: 279 RLAERLG-RDEVSVREFTPEVGLTDRLRGGVEGAAYAFGAGLASSVDPDDGF 329


>gi|17987818|ref|NP_540452.1| Na(+)/H(+) antiporter 1 / protease IV [Brucella melitensis bv. 1
           str. 16M]
 gi|17983545|gb|AAL52716.1| na(+)/h(+) antiporter 1 / protease iv [Brucella melitensis bv. 1
           str. 16M]
          Length = 763

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64
           L      ++              +  + + G I                   +E+   D 
Sbjct: 470 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 529

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122
            A A+ +S++SPGG+      I+R I+ +  +++K V   V ++AAS GY+I+ A + I+
Sbjct: 530 HAPAVAISINSPGGAPVQSRLIYRRIRDLAAEHQKKVFVFVEDVAASGGYMIALAGDEII 589

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A  +S+VGSIGV+         L K+GV  +   +   K    PF     + ++ ++ + 
Sbjct: 590 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 649

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              +  F+ +V E R         L  G  WTG  A  +GLID +G      +  Y    
Sbjct: 650 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMLSFLRKTYG--- 706

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291
                K+K   P +      L  + + S   +   +       GL       A+W
Sbjct: 707 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 758


>gi|84685232|ref|ZP_01013131.1| peptidase, family S49 [Maritimibacter alkaliphilus HTCC2654]
 gi|84666964|gb|EAQ13435.1| peptidase, family S49 [Rhodobacterales bacterium HTCC2654]
          Length = 264

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 67/260 (25%), Positives = 110/260 (42%), Gaps = 20/260 (7%)

Query: 33  DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
              P VA I + G I        +   +   IER  R     A+ +S++SPGGS      
Sbjct: 9   TPDPTVAVIRLHGSISTGTRGQLNDVAMAGPIERAFRRKP-KAVALSINSPGGSPVQSSL 67

Query: 86  IFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           I   I+++ + K  PV   V + AAS GY ++CA++ I A  +S++GSIGV+        
Sbjct: 68  IAARIRRLADEKEVPVYAFVEDAAASGGYWLACAADEIYADRSSILGSIGVIMASFGAHE 127

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           F+ K G+  +   S   K++  PF   +PK V+ ++ V    +  F+  V  +R      
Sbjct: 128 FIAKHGIERRVYTSGESKSQLDPFKPEDPKDVERIKAVGSEIHEAFIEHVKAARKDKLAD 187

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              L  G  W G +A  +GL D +G      +  +         K     P K+ +    
Sbjct: 188 DPSLFTGEFWVGQKAVDLGLADGIGHLVPFMKEKFG-----KDVKFAVLGPKKSLFKRF- 241

Query: 264 KNLSISSLLEDTIPLMKQTK 283
                + + ED I  ++   
Sbjct: 242 ----GAQIAEDAIATVEDRA 257


>gi|298293861|ref|YP_003695800.1| peptidase S49 [Starkeya novella DSM 506]
 gi|296930372|gb|ADH91181.1| peptidase S49 [Starkeya novella DSM 506]
          Length = 298

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 112/274 (40%), Gaps = 14/274 (5%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSA 80
               ++P V  + + G I  +             + +ER      A A+ + ++SPGG+ 
Sbjct: 21  KFRGDTPVVPVVRLSGAIGMATPFRPGVTFANTAKALERAFAVKGAKAVALIINSPGGAP 80

Query: 81  YAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
                +++ I+ +   K  PVI  V ++AAS GY+++CA++ IVA   S+VGSIGV+   
Sbjct: 81  AQSHLVYKRIRALAEEKELPVIAFVEDVAASGGYMLACAADEIVADVFSIVGSIGVVSAG 140

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                 L+KLG+  +   +   K    PF     + ++ ++ +    +  FV LV + R 
Sbjct: 141 FGFPRALEKLGIDRRVYTAGERKVMLDPFQPEKEEDIERLKALQQEIHAAFVDLVKQRRG 200

Query: 199 IPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK--DWNPP 255
                    L  G  W   +A+ +GL+D +G      ++ Y   V   + + +   +   
Sbjct: 201 DVLSAEDSTLFSGEFWAAPQAQGLGLVDSIGDMRSFLRARYGDKVRTPLIESRGGLFGRR 260

Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                                 L+   + +  WA
Sbjct: 261 SPGVMKLGDGFGGEVGAGAAEALISAAEERASWA 294


>gi|261879358|ref|ZP_06005785.1| signal peptide peptidase SppA [Prevotella bergensis DSM 17361]
 gi|270333923|gb|EFA44709.1| signal peptide peptidase SppA [Prevotella bergensis DSM 17361]
          Length = 589

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 100/284 (35%), Gaps = 31/284 (10%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTV----------VYFSWSSHVEDNSPHVARIAIRGQIEDS 50
           M+  LK +    V L +  + +          +  S  +  +     V  I + G +++ 
Sbjct: 1   MKDFLKYVGATIVGLIIFGVALSVLGVMSIAGMIASSEATQKIKENSVLVIDLNGVMQEQ 60

Query: 51  -----------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
                            +E++  I++   +++   + ++  +        E I  A++  
Sbjct: 61  ADESISTQLSGNTNLGLREILLAIKKAKNNENIKGIYLNAGALQADMAQLEEIRNALEGF 120

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           +     I    E  +   Y ++ A+N I       +   G+  Q  ++K    K+G+ + 
Sbjct: 121 RKTGKWIVAYGETYSQPCYYLASAANKIYMNPQGAIDWTGIGGQVVFLKDTYAKIGIKMI 180

Query: 154 SVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             K    K+    ++E  ++  + Q  +  +   +    + VS+SR I  D     +D  
Sbjct: 181 PFKCGKYKSATEIYTEDHMSEPSRQQTERYIGGWWQTICQAVSKSRGISTDTLNAYADRV 240

Query: 212 I--WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           I         K  ++D +   ++V  ++  L        I   +
Sbjct: 241 ITLEDPKNMVKYKMVDGLLYNDQVKNTVKKLLKLDEDDAINQIS 284



 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 61/279 (21%), Positives = 121/279 (43%), Gaps = 19/279 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQ---------------ELIERIERISRDDSATALIVSLS 74
             + +   +A     G I +                 ++ + +  ++ +D   A+++ ++
Sbjct: 292 QEDTDGDAIAVYYAYGNIVNEDVPQNSFLTPNLIVAKDVCKDLAELADNDDVKAVVLRVN 351

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           S GGSAYA E I+R ++ +K +KPV+  +   AAS GY IS  +N I A  T++ GSIG+
Sbjct: 352 SGGGSAYASEQIWRQVELLKAKKPVVVSMGGAAASGGYYISAGANYIYAEPTTITGSIGI 411

Query: 135 LFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
                     +   LGV    VK++      S    +  +    +Q  +D  Y  F   V
Sbjct: 412 FGIARDRSDLMTRMLGVKYDEVKTNRNSTMGSEVKPMTAEQFGYIQSSIDRGYMLFKNRV 471

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           ++ R +  DK    + G ++ G++A K+GL+D +GG ++       L          ++ 
Sbjct: 472 AKGRRMSMDKVEAYAQGHVYLGSDALKLGLVDGLGGLDKAVAKAAQLAKV-ETYYTTNYP 530

Query: 254 PPKNYWFCDLKNLSIS--SLLEDTIPLMKQTKVQGLWAV 290
            P + +   +K+       +L++ + +      +    +
Sbjct: 531 APASLFDQIMKSTEGREDGILDEKLRIALGNFYEPFMLI 569


>gi|312194538|ref|YP_004014599.1| peptidase S49 [Frankia sp. EuI1c]
 gi|311225874|gb|ADP78729.1| peptidase S49 [Frankia sp. EuI1c]
          Length = 827

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 106/246 (43%), Gaps = 1/246 (0%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-I 100
            + G +  +  +       ++D    A +  + SPGGS  A + + R +++ +      I
Sbjct: 505 PVGGSVLAADAVCAAFRAAAKDPDIAAAVFRVDSPGGSYVASDLVRREVERFRATGRPVI 564

Query: 101 TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160
             +  +AAS GY ++ A++ IVA  ++L GSIGV      +   LDKLGV+I  V     
Sbjct: 565 VSMGAVAASGGYFVALAADTIVANPSTLTGSIGVYGGKQVISGLLDKLGVAIGEVAQGEH 624

Query: 161 KAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKK 220
               S     +P     + + +D  Y  FV  V+ SR +P ++   L+ GR+WTGA+A +
Sbjct: 625 ALMMSARRPFSPGERAKLDEFLDRVYADFVGKVATSRAMPLERADELARGRVWTGADAHR 684

Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            GL+D +GG E   +  +        R  +    P       ++    S           
Sbjct: 685 HGLVDELGGLERSLRLAWTAAGLPGTRPSRIRLLPHRSLVDHVRPARSSEDTAAAFGDGS 744

Query: 281 QTKVQG 286
              + G
Sbjct: 745 GASLVG 750



 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 80/190 (42%), Gaps = 7/190 (3%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           +E+++ + R + D     L+  ++S G      + I  A+ + +          +     
Sbjct: 54  REIVDGLRRAALDPRTRVLVAHVASCGMPIARVQEIRDAVGEFRAAGKFAIAYADTFGEF 113

Query: 111 -----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
                 Y ++CA + I  A    +G  GV    P+++  LD+LGV+ +       K   +
Sbjct: 114 GGGTVPYYLACAFDQIWLAPPGDLGLTGVASHTPFLRDALDRLGVAAELGARHEYKNAVN 173

Query: 166 PFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
            F E     + ++    VV+SS    +  +   R +P D+   L D    +   A + GL
Sbjct: 174 TFVERGFTAEHLEATTRVVESSADEIIAGIVAGRRLPADRVRRLVDAGPLSAQVALRTGL 233

Query: 224 IDVVGGQEEV 233
           +D +G ++EV
Sbjct: 234 VDRLGYRDEV 243


>gi|218659745|ref|ZP_03515675.1| signal peptide peptidase SppA, 36K type [Rhizobium etli IE4771]
          Length = 254

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 144/226 (63%), Gaps = 3/226 (1%)

Query: 5   LKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
            K    R V ++LV    + F            PH+A + I G I D  EL+ER++++  
Sbjct: 25  RKLGFWRIVAVALVVALGLAFYGFAFGGAGTERPHIAHVTISGLIVDDDELLERLKKVET 84

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
            D   A ++S+SSPGG+ Y GE IF+AI+ +  +KPV+++V  +AASAGY+++ A + I+
Sbjct: 85  SDQVKAAVISISSPGGTTYGGEKIFKAIRAISAKKPVVSDVRTLAASAGYMVATAGDTII 144

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A ++S+ GSIGV+FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A  M++++V
Sbjct: 145 AGDSSITGSIGVIFQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKAMIRNMV 204

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVV 227
             SY+WFV LV++ R +P ++ L L     +       +  LID +
Sbjct: 205 VDSYNWFVDLVADRRKLPREEALKLARRHLLLPAGRHFQAKLIDTI 250


>gi|239947249|ref|ZP_04699002.1| signal peptide peptidase SppA [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921525|gb|EER21549.1| signal peptide peptidase SppA [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 304

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/264 (23%), Positives = 115/264 (43%), Gaps = 18/264 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGG 78
           +S   D+   +A + + G I            + L E IE+  +     AL + ++SPGG
Sbjct: 31  ASVFGDSKEVIAVLRLSGVIGKVSTMQSGLTLESLNELIEKAFKIKKLKALCLIINSPGG 90

Query: 79  SAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           S    E I + I+ +  +N+  + + + +MAAS GY ++C+ + I A+ +S++GSIGV+ 
Sbjct: 91  SPVQSELIAKRIRDLAKENKIKIYSFIEDMAASGGYWLACSGDRIYASYSSVIGSIGVVS 150

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                   ++KLG+  +       KA   PF  +N   +++++D+    Y  FV  V   
Sbjct: 151 SGFGFHEAINKLGIERRVYTEGKNKAILDPFKPINKDDLKIIKDLQKQVYEHFVEYVKTR 210

Query: 197 RNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
           R     +   +  +G  W G  A   GLID +G    V +  +   +         +   
Sbjct: 211 RVGKLTQQDEILFNGEFWAGQTALDYGLIDGIGDMYSVMKEKFGDNIKF------QYLCA 264

Query: 256 KNYWFCDLKNLSISSLLEDTIPLM 279
           K  W      +S   L ++    +
Sbjct: 265 KQPWLKKKLGMSSKILADNFANSL 288


>gi|256256945|ref|ZP_05462481.1| Clp protease [Brucella abortus bv. 9 str. C68]
          Length = 736

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 114/295 (38%), Gaps = 24/295 (8%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64
           L      ++              +  + + G I                   +E+   D 
Sbjct: 443 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 502

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122
            A A+ +S++SPGG+      I+R I+ +  +++K V   V ++AAS GY+I+ A + I+
Sbjct: 503 HAPAVAISINSPGGAPVQLRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 562

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A  +S+VGSIGV+         L K+GV      +   K    PF     + ++ ++ + 
Sbjct: 563 ADPSSIVGSIGVVSASFGFPELLKKIGVERHVYTAGSNKVTLDPFQPEKAEDIERLKALQ 622

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              +  F+ +V E R         L  G  WTG  A  +GLID +G      +  Y    
Sbjct: 623 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 679

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291
                K+K   P +      L  + + S   +   +       GL       A+W
Sbjct: 680 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 731


>gi|254501444|ref|ZP_05113595.1| peptidase, S49 (protease IV) family [Labrenzia alexandrii DFL-11]
 gi|222437515|gb|EEE44194.1| peptidase, S49 (protease IV) family [Labrenzia alexandrii DFL-11]
          Length = 285

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 118/287 (41%), Gaps = 19/287 (6%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERI---------ERISRDDSATAL 69
            L+ +       +++++P +  + ++G I  S  L   +         ER      A A+
Sbjct: 1   MLSSLRRFLPGFLKNDAPIIPVVRLQGPIGMSSPLRPGLSLATAALPLERAFSMKKAPAV 60

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
            + ++SPGGS      IF+ I+ +  +N K V+  V ++AAS GY+I+ A + I+   +S
Sbjct: 61  ALIVNSPGGSPVQSRLIFQRIRDLAKENEKDVLVFVEDVAASGGYMIALAGDEIIVDPSS 120

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           +VGSIGV+         + K+GV  +   +   K    PF    P+ ++ ++ +    + 
Sbjct: 121 VVGSIGVVAAGFGFTELIGKIGVERRVYTAGEKKVTLDPFQPEVPEDIEYLKTLQQEIHD 180

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F+ +V   R         L  G+ WTG  A  +GL+D +G    V +  Y    +  + 
Sbjct: 181 TFIDMVKSRRADVLSDEPDLFTGKFWTGTSAVNLGLVDSLGDLRGVLKKRYGDKAEAKLI 240

Query: 248 KIKD--WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
                 +                + L  + I   ++  +      W 
Sbjct: 241 SAPRGLFGRKGGVGVNLEAGALTAGLGNELISAAEERLM------WQ 281


>gi|189184683|ref|YP_001938468.1| SohB protease [Orientia tsutsugamushi str. Ikeda]
 gi|189181454|dbj|BAG41234.1| SohB protease [Orientia tsutsugamushi str. Ikeda]
          Length = 305

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 117/260 (45%), Gaps = 14/260 (5%)

Query: 33  DNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           +N   V+ I + G I              L   IE+       TA+ + ++SPGGS    
Sbjct: 37  NNKSVVSVIHLTGIIGKVGSFKSGLTLHTLNSVIEKAFSFKKLTAVCLVVNSPGGSPVQS 96

Query: 84  EAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
           E I   I ++ N+K  PV + V ++AAS GY ++CA   I A+++S++GSIGV++    +
Sbjct: 97  ELIASRILQLSNQKNVPVYSFVEDVAASGGYWLACAGKKIYASKSSIIGSIGVIYMGFGL 156

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              + KLG+  +   S   K+   PF       ++++Q++    ++ F+  +   R    
Sbjct: 157 HEAIGKLGIKRRVYTSGNNKSILDPFMPEKDSDIKIIQNLQKKIHNHFISYIKSRRGDKI 216

Query: 202 DKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
            +    + +G  W+G +A + GLID +        + Y   +       K     +    
Sbjct: 217 TQEDKVIYNGEFWSGEQALEYGLIDGINDMYSFLNTKYGDSIKIEYVSTKQSWIKRK--L 274

Query: 261 CDLKNLSISSLLEDTIPLMK 280
             + ++   SL++ T+  ++
Sbjct: 275 GLIIDIGADSLVQKTLKAIE 294


>gi|294675947|ref|YP_003576562.1| S49 family peptidase [Rhodobacter capsulatus SB 1003]
 gi|294474767|gb|ADE84155.1| peptidase, S49 family [Rhodobacter capsulatus SB 1003]
          Length = 275

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 118/265 (44%), Gaps = 20/265 (7%)

Query: 36  PHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
           P VA + ++G I              L E +ER  R     A+ + ++SPGGS      I
Sbjct: 16  PRVAVVRLQGAIGISRPGAPGLSDAALAETLERAFRKGKPVAVALIINSPGGSPVQSSLI 75

Query: 87  FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
              I+ +      PV   + ++AAS GY ++CA++ I A  TS+VGSIGV+         
Sbjct: 76  AARIRALAAETGLPVHAFIEDVAASGGYWLACAADDIWADATSIVGSIGVISSGFGFADL 135

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           + + GV  +   +   K+   PF    P+ V  +  +++  +  F   V++ R       
Sbjct: 136 IGRYGVERRVHTAGGSKSFLDPFRPEKPEDVDRLTRLLEDMHRAFKAWVTDRRGAKLAAG 195

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             L  G IWTGA+A + GLID +       ++LY         K+  + P +++    L+
Sbjct: 196 ADLFTGEIWTGAQALETGLIDGLAHPGPKLRALYG-----DKVKLVPYGPRRSW----LR 246

Query: 265 NLSISSLLEDTIPLMKQTKVQGLWA 289
               S   E  + +++  + + LWA
Sbjct: 247 RFGASMAAEAAVSVLEAAEERALWA 271


>gi|299134685|ref|ZP_07027877.1| peptidase S49 [Afipia sp. 1NLS2]
 gi|298590495|gb|EFI50698.1| peptidase S49 [Afipia sp. 1NLS2]
          Length = 293

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 62/264 (23%), Positives = 109/264 (41%), Gaps = 14/264 (5%)

Query: 38  VARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           V  + + G I              + + +E+      A A+ + ++SPGGS      I+ 
Sbjct: 28  VPVVRLSGTIGAVTPLRPGLSLSGVSKLLEKAFETKRAKAVALVINSPGGSPVQSHQIYA 87

Query: 89  AIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
            I+++   K  PV+  V ++AAS GY+I+CA + I    +S++GSIGV+      +  + 
Sbjct: 88  RIRQLAETKKIPVLAFVEDVAASGGYMIACAGDEIFCDSSSILGSIGVIGGTFGFQDLIK 147

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           K+G+  +   S   K+   PF   +P  V  ++ +    +  F+ LV  SR         
Sbjct: 148 KIGIERRIYTSGEHKSSLDPFLPESPDDVARLKAIQREIHDSFIDLVKRSRGARLQGEAS 207

Query: 207 -LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L  G  W G  + K+GL D +G    V ++ Y  G    +  I   +   +        
Sbjct: 208 YLFSGEYWAGERSVKLGLADGIGDLRSVVRARY--GERVRMPVIAPKSGLLSTLAGRKPG 265

Query: 266 LSISSLLEDTIPLMKQTKVQGLWA 289
                       L+   + + LWA
Sbjct: 266 AEAMIGAGFADDLISALETRALWA 289


>gi|307352941|ref|YP_003893992.1| signal peptide peptidase SppA, 36K type [Methanoplanus petrolearius
           DSM 11571]
 gi|307156174|gb|ADN35554.1| signal peptide peptidase SppA, 36K type [Methanoplanus petrolearius
           DSM 11571]
          Length = 290

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 13/216 (6%)

Query: 33  DNSPHVARIAIRGQI----------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             S  V+ I I G I            S+ +  RI + + D    A+++ + SPGGS   
Sbjct: 45  SESKGVSVIRIEGTIETGDFYSGGYVGSEYVGSRIRQAADDPLVEAIVLRVDSPGGSPAG 104

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            + I   +Q  K +KPV   + +MA SA Y IS  ++ I A+  +L GSIG ++ +    
Sbjct: 105 AQEIIEDVQYAKTKKPVFVSMGDMATSAAYYISAYADKIYASPDTLTGSIGTIWTFIDTS 164

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L   GV++  VKS  MK   S +  +  +  + +Q +VD S+  F+  V   RNI  +
Sbjct: 165 RSLQIEGVNVSIVKSGDMKDLTSQYRGLTDEEQEYVQAMVDESFERFLDDVLSQRNISRE 224

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                   +++ G +A  +GLID  G   E  ++  
Sbjct: 225 DVEE---AQLYRGEDAYDLGLIDEFGNLFETMEAAK 257


>gi|260883200|ref|ZP_05894814.1| Na+/H+ antiporter NhaA [Brucella abortus bv. 9 str. C68]
 gi|260872728|gb|EEX79797.1| Na+/H+ antiporter NhaA [Brucella abortus bv. 9 str. C68]
          Length = 723

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 114/295 (38%), Gaps = 24/295 (8%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64
           L      ++              +  + + G I                   +E+   D 
Sbjct: 430 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 489

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122
            A A+ +S++SPGG+      I+R I+ +  +++K V   V ++AAS GY+I+ A + I+
Sbjct: 490 HAPAVAISINSPGGAPVQLRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 549

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A  +S+VGSIGV+         L K+GV      +   K    PF     + ++ ++ + 
Sbjct: 550 ADPSSIVGSIGVVSASFGFPELLKKIGVERHVYTAGSNKVTLDPFQPEKAEDIERLKALQ 609

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              +  F+ +V E R         L  G  WTG  A  +GLID +G      +  Y    
Sbjct: 610 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 666

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291
                K+K   P +      L  + + S   +   +       GL       A+W
Sbjct: 667 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 718


>gi|288960112|ref|YP_003450452.1| serine protease [Azospirillum sp. B510]
 gi|288912420|dbj|BAI73908.1| serine protease [Azospirillum sp. B510]
          Length = 296

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/282 (19%), Positives = 105/282 (37%), Gaps = 17/282 (6%)

Query: 21  TVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIV 71
           +++            P V+ + + G I              +   ++R        A+ +
Sbjct: 5   SLLAKLPFGPWRKAGPLVSVVRLTGVIGQGGPLRSGLTLAGVAPLLDRAFAPKDQKAVAL 64

Query: 72  SLSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLV 129
            ++SPGGS      I + I+ +   K  PV     + AAS GY ++CA++ I A E+S++
Sbjct: 65  VVNSPGGSPVQSALIAKRIRDLAEEKKVPVFAFCEDAAASGGYWLACAADEIWADESSIL 124

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+     +   +++ G+  +   +   K    PFS      V  ++ +    +  F
Sbjct: 125 GSIGVVSSGFGLHGLIERHGIERRLYTAGDRKVLLDPFSPEREDGVAHLKALQADVHEAF 184

Query: 190 VRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
             +V   R          L  G  W G +A  +GLID +G    V +  +   V   + +
Sbjct: 185 KAMVRSRRGDRLKGAEEDLFSGAFWAGRKALALGLIDGLGDIRSVMRGRFGEKVRLRVVE 244

Query: 249 -----IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
                ++       Y          S    D +    +  + 
Sbjct: 245 RERGLLRRAGLKAGYGDAPALTAGASEAFADALVSAARQSLD 286


>gi|227821040|ref|YP_002825010.1| putative peptidase [Sinorhizobium fredii NGR234]
 gi|227340039|gb|ACP24257.1| putative peptidase [Sinorhizobium fredii NGR234]
          Length = 288

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/265 (22%), Positives = 114/265 (43%), Gaps = 13/265 (4%)

Query: 38  VARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           +  I + G I               +   +E+      A A+ +S++SPGGS      I+
Sbjct: 20  IPTIRLHGTIMSGGGQFRPVLNLATVAPLLEKAFSVKEAPAVAISVNSPGGSPVQSRLIY 79

Query: 88  RAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           + I+ +  + +K V+  V ++AAS GY+I+ A + I+A  +S+VGSIGV+         L
Sbjct: 80  QRIRDLADEKKKRVLIFVEDVAASGGYMIALAGDEIIADPSSIVGSIGVVSGGFGFPELL 139

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV  +   +   K    PF     + V+ ++ +    +  F++LV   R        
Sbjct: 140 KKVGVERRVYTAGENKVVLDPFQPEKERDVEFLKSLQLDIHDTFIQLVKARRGSMLADHP 199

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQE-EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
            +  G  WTG   +++GL+D +G    EV +        + I+  +     +        
Sbjct: 200 DIFSGLFWTGRRGQELGLVDALGDMRGEVKRRYGEKARLELIQPSRSLFGRRQPGAAVGG 259

Query: 265 NLSISSLLEDTIPLMKQTKVQGLWA 289
           +++          L++  + + LWA
Sbjct: 260 SIAAPLAASAAAGLLEAIEERALWA 284


>gi|327537611|gb|EGF24323.1| signal peptide peptidase SppA, 36K type [Rhodopirellula baltica
           WH47]
          Length = 397

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 117/323 (36%), Gaps = 53/323 (16%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDSQE-------------LIERIERISRDDSATALI 70
               ++   D+   +A + + G + D                  E++  I  D +  A++
Sbjct: 65  AIQINAKSSDSQSRIAIVDVDGLLIDQNFSGFGSMGENPVSLFREKMRHIESDPTILAVV 124

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI--IVAAETSL 128
           + ++SPGG   A + +   ++ +K+ + +      M    G     A++   IVA  TS+
Sbjct: 125 LRINSPGGGVTASDMLAHQLKHLKSNRNIPVVACLMTTGTGGAYYLATHADAIVAHPTSV 184

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
           VG IGV+     ++  L +  +    +KS       SP   +  +   ++Q + D  +  
Sbjct: 185 VGGIGVILNNYNMEDTLGQFNIVSLPIKSGDKIDVGSPERMMQREERDLLQSMADEFHQR 244

Query: 189 FVRLVSESRNIPYDKTLVL-----------------------------------SDGRIW 213
           F+  V  SR      T  +                                    DGR+ 
Sbjct: 245 FIEQVRSSRGERLVVTSEVDESNLDESDANKLDAGDLDRDDVDDAELKPSELIPFDGRVV 304

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY---WFCDLKNLSISS 270
           +G  A+K+GL+D  G  ++       +    S   +       +     F    N+ ++S
Sbjct: 305 SGLHAQKIGLVDQTGYLDDAVSLAGRMAGLSSSPALVLLRRDNDRAMSEFDVTPNVPMTS 364

Query: 271 LLEDTIPLMKQTKVQGLWAVWNP 293
           +L   +P + ++ +     +W P
Sbjct: 365 ILPIQLPGLDRSSMPTFLYLWQP 387


>gi|256112915|ref|ZP_05453828.1| Na(+)/H(+) antiporter 1 / protease IV [Brucella melitensis bv. 3
           str. Ether]
 gi|265994355|ref|ZP_06106912.1| Na+/H+ antiporter NhaA [Brucella melitensis bv. 3 str. Ether]
 gi|262765468|gb|EEZ11257.1| Na+/H+ antiporter NhaA [Brucella melitensis bv. 3 str. Ether]
          Length = 736

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64
           L      ++              +  + + G I                   +E+   D 
Sbjct: 443 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 502

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122
            A A+ +S++SPGG+      I+R I+ +  +++K V   V ++AAS GY+I+ A + I+
Sbjct: 503 HAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 562

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A  +S+VGSIGV+         L K+GV  +   +   K    PF     + ++ ++ + 
Sbjct: 563 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 622

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              +  F+ +V E R         L  G  WTG  A  +GLID +G      +  Y    
Sbjct: 623 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMLSFLRKTYG--- 679

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291
                K+K   P +      L  + + S   +   +       GL       A+W
Sbjct: 680 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 731


>gi|256044114|ref|ZP_05447025.1| Na(+)/H(+) antiporter 1 / protease IV [Brucella melitensis bv. 1
           str. Rev.1]
 gi|189029205|sp|Q8YFI5|NHAA_BRUME RecName: Full=Na(+)/H(+) antiporter nhaA; AltName:
           Full=Sodium/proton antiporter nhaA
          Length = 736

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64
           L      ++              +  + + G I                   +E+   D 
Sbjct: 443 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 502

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122
            A A+ +S++SPGG+      I+R I+ +  +++K V   V ++AAS GY+I+ A + I+
Sbjct: 503 HAPAVAISINSPGGAPVQSRLIYRRIRDLAAEHQKKVFVFVEDVAASGGYMIALAGDEII 562

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A  +S+VGSIGV+         L K+GV  +   +   K    PF     + ++ ++ + 
Sbjct: 563 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 622

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              +  F+ +V E R         L  G  WTG  A  +GLID +G      +  Y    
Sbjct: 623 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMLSFLRKTYG--- 679

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291
                K+K   P +      L  + + S   +   +       GL       A+W
Sbjct: 680 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 731


>gi|220916373|ref|YP_002491677.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219954227|gb|ACL64611.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 834

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 113/266 (42%), Gaps = 24/266 (9%)

Query: 38  VARIAIRGQIE---------------DSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
           +  + + G I                 ++ +   I R + D +  A+++ + S GG   A
Sbjct: 544 IQVVRVEGIIARGRSRADPLGADGVAGAETIAAEIHRAADDAAVRAIVLRIESGGGDGLA 603

Query: 83  GEAIFR-AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
            + I+R A++  +  KPVI  + ++AAS GYL++  ++ I+A  ++L GSIGV    P +
Sbjct: 604 SDLIWREAVRARRKGKPVIASMGDLAASGGYLVAVGADAILAERSTLTGSIGVFAAKPDL 663

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L KL +  ++ +        S      P    +++  V + Y  FV  V+E R +  
Sbjct: 664 SGLLAKLSIHPEAYQRGENARLVSVLKPWTPAERAVLEKQVGAFYRQFVARVAEGRRLTT 723

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
            +   ++ GR+WTG +A +  L+D +G   +  +             ++           
Sbjct: 724 AEVEAVAGGRVWTGQQALERRLVDRIGTLADAIRLARERIGLAPDDVVE--------VRR 775

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287
           +    +++ +    +    +  + GL
Sbjct: 776 EDGGGALARVAGHALTAAPEPPLAGL 801



 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 102/240 (42%), Gaps = 3/240 (1%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
            L+ R+E    D    AL+V +          E +   +  V+ RKPV+  +     +  
Sbjct: 327 TLVTRLEAARDDPEVGALLVRIGGLSLGGGRVEELRALLAAVRARKPVLAYLEG-GGTRE 385

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FSE 169
           Y ++  +  I A   + +   G+     +++  L +LG++   VK+   K+   P     
Sbjct: 386 YWLATGATAIAAPPGAPLIVNGISTSQLFLRGGLARLGIAFDVVKAGAYKSAAEPLVRDA 445

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
            +P+A +  + V+D  +  FV  V+E+R +P ++   L D  ++T  EAK  GL+D V  
Sbjct: 446 PSPEAREATEAVLDDVFGRFVAQVAEARRLPPERVRALVDQGLFTAEEAKDAGLVDAVAW 505

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
            +E+ +   A+   +   +      P+       +   I  +  + I    +++   L A
Sbjct: 506 PDELERWGRAVAGRRLFERGAYRPEPERLAQRWGRPAVIQVVRVEGIIARGRSRADPLGA 565


>gi|192289645|ref|YP_001990250.1| peptidase S49 [Rhodopseudomonas palustris TIE-1]
 gi|192283394|gb|ACE99774.1| peptidase S49 [Rhodopseudomonas palustris TIE-1]
          Length = 300

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 67/270 (24%), Positives = 119/270 (44%), Gaps = 19/270 (7%)

Query: 36  PHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
           P V  + + G I     L          + ++R     +A A+ ++++SPGGS      I
Sbjct: 31  PVVPVVRLSGTIGAVTPLRPGLTLAGVAKLLDRAFSTRNAKAVALAINSPGGSPVQSRLI 90

Query: 87  FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           +  I+ +   K  PV   V ++AAS GY+I+CA++ I    +S++GSIGV+      +  
Sbjct: 91  YLRIRALAAEKKLPVYAFVEDVAASGGYMIACAADEIYCDPSSILGSIGVVGGGFGFQEL 150

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-K 203
           + K+GV  +   +   KA+  PF   +P+ V  ++ +    +  F+ LV ESR      +
Sbjct: 151 IRKIGVERRLYTAGERKAQLDPFLPEDPQEVARLKVLQQEIHALFIALVKESRGTRLKGE 210

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              L  G  W GA +  +GL D +G    V +     G      +    +PP        
Sbjct: 211 ESKLFTGEYWAGATSVSLGLADSIGDLRAVLR-----GKFGDKVRTPLISPPTGLLANLS 265

Query: 264 KNLSISSLLEDTIPLMKQTKVQGL--WAVW 291
           +  S +    D +  + ++ +  L   A+W
Sbjct: 266 RKSSGAGASLDGVAALPESMITALETRAIW 295


>gi|190573850|ref|YP_001971695.1| putative head-tail preconnector protein [Stenotrophomonas
           maltophilia K279a]
 gi|190011772|emb|CAQ45392.1| putative head-tail preconnector protein [Stenotrophomonas
           maltophilia K279a]
          Length = 402

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 14/221 (6%)

Query: 30  HVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSP 76
                   +A + I G +                QEL  +++    D S  A+++ + SP
Sbjct: 50  SPPTTDGGIAVLPIYGTLVRRAVGLEAASGLTSYQELATQLDAAIADPSVAAIVLDIDSP 109

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GG +     +   ++     KPV    ++MA SA Y +  A+N      T  VGSIGV+ 
Sbjct: 110 GGESGGVFDLADRVRAAARIKPVWALANDMAYSAAYALGSAANRFFVTRTGGVGSIGVIA 169

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
            +        + GV   +V +   K + +P   ++ +A   ++  VD  Y  FV  V+  
Sbjct: 170 MHADQSVRDAQDGVRYTTVFAGARKNDLNPHEPISDEAHAFLKSEVDRIYSLFVDTVASH 229

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           R +  D       G ++ G +A   GL D VG  +++   L
Sbjct: 230 RGLTGDAVRATEAG-VFFGQDAVAAGLADAVGTFDDLLAEL 269


>gi|13476173|ref|NP_107743.1| proteinase [Mesorhizobium loti MAFF303099]
 gi|14026933|dbj|BAB53529.1| probable proteinase [Mesorhizobium loti MAFF303099]
          Length = 286

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/265 (23%), Positives = 111/265 (41%), Gaps = 13/265 (4%)

Query: 37  HVARIAIRGQIEDSQELIE---------RIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
            +  I + G I    +  +          IE+    D A A+ +S++SPGGS      IF
Sbjct: 19  TIPVIRLHGTIMAGGQFRQNLSLASTAGLIEKAFSFD-APAVAISINSPGGSPVQSRLIF 77

Query: 88  RAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           R I+ +   K    +  V ++AAS GY+I+ A + I A  +S+VGSIGV+         +
Sbjct: 78  RRIRDLAAEKNKKVLVFVEDVAASGGYMIAVAGDEIFADPSSIVGSIGVVSASFGFPELM 137

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K+GV  +   +   KA   PF     + V+ ++ +    +  F+ LV E R        
Sbjct: 138 KKIGVERRVHTAGQNKAVLDPFKPEKKEDVERLKALQLEVHETFIDLVKERRGTKLKDDP 197

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA-LGVDQSIRKIKDWNPPKNYWFCDLK 264
            L  G  WTG +  ++GL+D +G    V ++ +      + I   + +      +     
Sbjct: 198 DLFTGLFWTGKKGLELGLVDALGDMRTVLKTRFGAKTQLRLITAPRGFLGRFGLFGSSKG 257

Query: 265 NLSISSLLEDTIPLMKQTKVQGLWA 289
             +          ++   + + LWA
Sbjct: 258 FSAPDIAAAAASGVIDAAEERALWA 282


>gi|39934118|ref|NP_946394.1| peptidase S49 [Rhodopseudomonas palustris CGA009]
 gi|39647966|emb|CAE26486.1| possible protease SohB [Rhodopseudomonas palustris CGA009]
          Length = 300

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 67/270 (24%), Positives = 119/270 (44%), Gaps = 19/270 (7%)

Query: 36  PHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
           P V  + + G I     L          + ++R     +A A+ ++++SPGGS      I
Sbjct: 31  PVVPVVRLSGTIGAVTPLRPGLTLAGVAKLLDRAFSTRNAKAVALAINSPGGSPVQSRLI 90

Query: 87  FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           +  I+ +   K  PV   V ++AAS GY+I+CA++ I    +S++GSIGV+      +  
Sbjct: 91  YLRIRALAAEKKLPVYAFVEDVAASGGYMIACAADEIYCDPSSILGSIGVVGGGFGFQEL 150

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-K 203
           + K+GV  +   +   KA+  PF   +P+ V  ++ +    +  F+ LV ESR      +
Sbjct: 151 IRKIGVERRLYTAGERKAQLDPFLPEDPQEVARLKVLQQEIHALFIALVKESRGTRLKGE 210

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              L  G  W GA +  +GL D +G    V +     G      +    +PP        
Sbjct: 211 ESKLFTGEYWAGATSVSLGLADSIGDLRAVLR-----GKFGDKVRTPLISPPTGLLANLS 265

Query: 264 KNLSISSLLEDTIPLMKQTKVQGL--WAVW 291
           +  S +    D +  + ++ +  L   A+W
Sbjct: 266 RKSSGAGASLDGVAALPESMITALETRAIW 295


>gi|260563474|ref|ZP_05833960.1| Na+/H+ antiporter nhaA [Brucella melitensis bv. 1 str. 16M]
 gi|265990527|ref|ZP_06103084.1| Na+/H+ antiporter NhaA [Brucella melitensis bv. 1 str. Rev.1]
 gi|260153490|gb|EEW88582.1| Na+/H+ antiporter nhaA [Brucella melitensis bv. 1 str. 16M]
 gi|263001311|gb|EEZ13886.1| Na+/H+ antiporter NhaA [Brucella melitensis bv. 1 str. Rev.1]
          Length = 723

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64
           L      ++              +  + + G I                   +E+   D 
Sbjct: 430 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 489

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122
            A A+ +S++SPGG+      I+R I+ +  +++K V   V ++AAS GY+I+ A + I+
Sbjct: 490 HAPAVAISINSPGGAPVQSRLIYRRIRDLAAEHQKKVFVFVEDVAASGGYMIALAGDEII 549

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A  +S+VGSIGV+         L K+GV  +   +   K    PF     + ++ ++ + 
Sbjct: 550 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 609

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              +  F+ +V E R         L  G  WTG  A  +GLID +G      +  Y    
Sbjct: 610 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMLSFLRKTYG--- 666

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291
                K+K   P +      L  + + S   +   +       GL       A+W
Sbjct: 667 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 718


>gi|32471387|ref|NP_864380.1| proteinase IV homolog yteI [Rhodopirellula baltica SH 1]
 gi|32443228|emb|CAD72059.1| proteinase IV homolog yteI [Rhodopirellula baltica SH 1]
          Length = 468

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/317 (17%), Positives = 113/317 (35%), Gaps = 53/317 (16%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSP 76
              D+   +A + + G + D                  E++  I  D +  A+++ ++SP
Sbjct: 142 KSSDSQSRIAIVDVDGLLIDQNFSGFGSMGENPVSLFREKMRHIESDPTILAVVLRINSP 201

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI--IVAAETSLVGSIGV 134
           GG   A + +   +Q +K+ + +      M    G     A++   IVA  TS+VG IGV
Sbjct: 202 GGGVTASDMLAHQLQHLKSNRNIPVVACLMTTGTGGAYYLATHADAIVAHPTSVVGGIGV 261

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +     ++  L +  +    +KS       SP   +  +   ++Q + D  +  F+  V 
Sbjct: 262 ILNNYNMEDTLGQFNIVSLPIKSGDKIDVGSPERMMQREERDLLQSMADEFHQRFIEQVR 321

Query: 195 ESRNIPY-------------DKTLVL----------------------SDGRIWTGAEAK 219
            SR                      L                       DGR+ +G  A+
Sbjct: 322 SSRGERLVVTSEVDESNLDESDADKLDAGDLDRDDMDDAELKPSDLIPFDGRVVSGLHAQ 381

Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY---WFCDLKNLSISSLLEDTI 276
            +GL+D  G  ++       +    S   +       +     F    N+ ++S+L   +
Sbjct: 382 TIGLVDQTGYLDDAVSLAGRMAGLSSSPALVLLRRDNDRAMSEFDVTPNVPMTSILPIQL 441

Query: 277 PLMKQTKVQGLWAVWNP 293
           P + ++ +     +W P
Sbjct: 442 PGLDRSSMPTFLYLWQP 458


>gi|317509305|ref|ZP_07966925.1| peptidase family S49 [Segniliparus rugosus ATCC BAA-974]
 gi|316252361|gb|EFV11811.1| peptidase family S49 [Segniliparus rugosus ATCC BAA-974]
          Length = 311

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 113/277 (40%), Gaps = 21/277 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQI-----------EDSQELIERIERISRDDSATALIVSLSSP 76
           SS  +     V+ + + G I            ++Q L   +    R  +A A+ + ++SP
Sbjct: 37  SSRKKVGGKIVSVVRLDGVIRSGGGPFGRGALNAQNLEAPLAEAFRVPNAVAVALIINSP 96

Query: 77  GGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GGS      I   I+++  +  KPV+    ++AAS GY ++CA++ I  +  + +GSIGV
Sbjct: 97  GGSPAQSALIGDRIRQLSAKHEKPVLAFCEDVAASGGYWLACAADEIFVSSGTAIGSIGV 156

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +     +   ++KLG+  +   +   KA   PF    P+ +  +  +    +  F+  V 
Sbjct: 157 VSSSFGLTDAIEKLGLERRVHTAGLNKARLDPFMPEKPEDIAWLTGIQTDIHKVFIDWVK 216

Query: 195 ESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           E R          L +  +W G  A ++G+ D VG    V    +         K  +  
Sbjct: 217 ERRGDKLSGTDEELFNADVWIGRRAVELGIADAVGSLRGVLAERF------PDAKPYEIK 270

Query: 254 PPKNYWFCDLKNLSISSLLEDTI-PLMKQTKVQGLWA 289
           P +          S+  +    +   +   + + +W+
Sbjct: 271 PKQQILQRLGLAASVEDIALRVMEGAVSSVERRAMWS 307


>gi|92118679|ref|YP_578408.1| peptidase S49 [Nitrobacter hamburgensis X14]
 gi|91801573|gb|ABE63948.1| peptidase S49 [Nitrobacter hamburgensis X14]
          Length = 293

 Score =  107 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/270 (23%), Positives = 109/270 (40%), Gaps = 18/270 (6%)

Query: 33  DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
              P V  + + G I              + + +ER    D+A A+ + ++SPGGS    
Sbjct: 19  SGKPVVPVVRLSGVIGAVTPLRPGMTLAGVAKTLERAFAVDNAKAVALLVNSPGGSPVQS 78

Query: 84  EAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
             IF  I+++   K  PV+  V ++AAS GY+I+CA + IV   +S++GSIGV+      
Sbjct: 79  RQIFLRIRQLAQEKKLPVLVFVEDVAASGGYMIACAGDEIVCDPSSILGSIGVVGGSFGF 138

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              + K+GV  +   +   KA   PF   NP  V  ++ +    +  F+ LV  SR    
Sbjct: 139 TELIGKIGVERRLYTAGEHKATLDPFLPENPDDVARLKAIQREIHATFIELVKTSRGARL 198

Query: 202 D-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
             +  +L  G  W G  +  +GL D +G      ++ +   V   +        P     
Sbjct: 199 KGEDDLLFTGEYWAGERSVALGLADAIGDLRSTLRARFGDKVLMPLIA------PSTGLL 252

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
             L      +    +           + A+
Sbjct: 253 AGLLGRKAGAGTLTSFDAALGLPDDLISAL 282


>gi|157803850|ref|YP_001492399.1| protease sohB [Rickettsia canadensis str. McKiel]
 gi|157785113|gb|ABV73614.1| possible protease sohB [Rickettsia canadensis str. McKiel]
          Length = 304

 Score =  107 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 109/261 (41%), Gaps = 18/261 (6%)

Query: 31  VEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAY 81
             D    +A + + G I            + L E IE+  +     AL + ++SPGGS  
Sbjct: 34  FGDAKNVIAVLRLSGVIGKVSTMQSGLTLESLNELIEKAFKIKKLKALCLIINSPGGSPV 93

Query: 82  AGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
             E I + I+ +  +N+  + + + +MAAS GY ++C+ + I A  +S++GSIGV+    
Sbjct: 94  QSELIAKRIRDLAKENKIKIYSFIEDMAASGGYWLACSGDRIYALSSSIIGSIGVVSSGF 153

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                ++KLG+  +       K+   PF  +N   +++++++    Y  FV  +   R  
Sbjct: 154 GFHEAINKLGIERRVYTEGKNKSVLDPFQPINKDDLKIIKNLQKQVYEHFVDYIKTRRAG 213

Query: 200 PYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              +   +  +G  W G  A   GLID +G    V +  +   +         +   K  
Sbjct: 214 KLTQQDEILFNGEFWAGQTALDYGLIDGIGDMYSVMKQKFGDNIKF------QYVCAKQP 267

Query: 259 WFCDLKNLSISSLLEDTIPLM 279
           W      +      ++    +
Sbjct: 268 WLKKKLGMGSKIFTDNLANSL 288


>gi|224372341|ref|YP_002606713.1| PfaP [Nautilia profundicola AmH]
 gi|223589924|gb|ACM93660.1| PfaP [Nautilia profundicola AmH]
          Length = 300

 Score =  107 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 68/286 (23%), Positives = 125/286 (43%), Gaps = 14/286 (4%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSW---------SSHVEDNSPHVARIAIRGQIEDS--Q 51
           F +K IK + V+  ++ L +              S  +    P+VA I I   I      
Sbjct: 15  FKIKAIKEKVVLFGVILLILAELVALGVFLKKTLSPSIPITKPYVAVININKTITVDYIN 74

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
           +L++++  + +D +    ++  ++PGGS  A +     ++ +   K V   V  MAAS G
Sbjct: 75  KLMDKMNALKKDKNCKEYLLVFNTPGGSPSASDEFNAYLKFLNKSKKVNVYVESMAASGG 134

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I  A   IVA + ++VGSIGV+  +  +     K+GV    +     K   S F + +
Sbjct: 135 YYIISAIKPIVANKNAVVGSIGVIMPHYVIGKLAKKIGVEEDDITVGKYKKPISLFKKAS 194

Query: 172 PKAVQMMQDV-VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
           P+  + +    +  +Y  F+++V+E RNI  DK    ++G+I+   +  K  L+D +   
Sbjct: 195 PEQKEYIMKNLLLPTYDNFLKIVAEDRNISIDKLKNYAEGKIFIATK-VKGVLVDKISTL 253

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
            E    +     D     I + +  K  +     +  +  LL+  I
Sbjct: 254 AEFKNEIKKRLGDVEFINI-NLDKKKFPYLNIKLDSDLGELLKGYI 298


>gi|225851933|ref|YP_002732166.1| Na+/H+ antiporter NhaA [Brucella melitensis ATCC 23457]
 gi|225640298|gb|ACO00212.1| Na+/H+ antiporter NhaA [Brucella melitensis ATCC 23457]
          Length = 763

 Score =  107 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 114/295 (38%), Gaps = 24/295 (8%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64
           L      ++              +  + + G I                   +E+   D 
Sbjct: 470 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 529

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122
            A A+ +S++SPGG       I+R I+ +  +++K V   V ++AAS GY+I+ A + I+
Sbjct: 530 HAPAVAISINSPGGVPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 589

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A  +S+VGSIGV+         L K+GV  +   +   K    PF     + ++ ++ + 
Sbjct: 590 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 649

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              +  F+ +V E R         L  G  WTG  A  +GLID +G      +  Y    
Sbjct: 650 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMLSFLRKTYG--- 706

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291
                K+K   P +      L  + + S   +   +       GL       A+W
Sbjct: 707 --DKVKLKLIQPQRGLLGRKLSGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 758


>gi|148284091|ref|YP_001248181.1| periplasmic serine proteases (ClpP class) [Orientia tsutsugamushi
           str. Boryong]
 gi|146739530|emb|CAM79252.1| Periplasmic serine proteases (ClpP class) [Orientia tsutsugamushi
           str. Boryong]
          Length = 305

 Score =  107 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 117/260 (45%), Gaps = 14/260 (5%)

Query: 33  DNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           +N   V+ I + G I              L   IE+       TA+ + ++SPGGS    
Sbjct: 37  NNKSVVSVIHLTGIIGKVGSFKSGLTLHTLNSVIEKAFSFKKLTAVCLVVNSPGGSPVQS 96

Query: 84  EAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
           E I   I ++ N+K  PV + V ++AAS GY ++CA   I A+++S++GSIGV++    +
Sbjct: 97  ELIASRILQLSNQKNVPVYSFVEDVAASGGYWLACAGKKIYASKSSIIGSIGVIYMGFGL 156

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              + KLG+  +   S   K+   PF       ++++Q++    ++ F+  +   R    
Sbjct: 157 HEAIGKLGIKRRVYTSGNNKSILDPFMPEKDSDIKIIQNLQKKIHNHFISYIKSRRGDKI 216

Query: 202 DKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
            +    + +G  W+G +A + GLID +        + Y   +       K     +    
Sbjct: 217 TQEDKVIYNGEFWSGEQALEYGLIDGINDMYSFLNTKYGDSIKIEYVSTKQSWIKRK--L 274

Query: 261 CDLKNLSISSLLEDTIPLMK 280
             + ++   SL++ T+  ++
Sbjct: 275 GLIIDIGADSLVQKTLKAIE 294


>gi|269124167|ref|YP_003306744.1| peptidase S49 [Streptobacillus moniliformis DSM 12112]
 gi|268315493|gb|ACZ01867.1| peptidase S49 [Streptobacillus moniliformis DSM 12112]
          Length = 552

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 121/262 (46%), Gaps = 13/262 (4%)

Query: 38  VARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           +  I   G I  +          +++E+IE +    +   +I+ ++SPGGSA   E I++
Sbjct: 285 IGVICAEGAIMPNNKSESIITYDDMLEKIESLQEIKNLKGVILRINSPGGSALESERIYK 344

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
            ++ +    P+   +  +AAS GY IS  +  +    +++ GSIGV+  YP      +K+
Sbjct: 345 ELKNL--DVPIFISMSSVAASGGYYISTVAKKVFLNPSTITGSIGVVSMYPTFDEISNKV 402

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           G++I++V S            +  +  + +   +   Y  F + V  +R +  +    ++
Sbjct: 403 GLNIETVNSGVATEIFDLKQPLTDELREKLIQSMRDVYIEFKKHVMTARVMTDEGLEKIA 462

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK--NYWFCDLKNL 266
            G+IW G EA ++GL D +GG ++  ++L      +  +           +    ++ N+
Sbjct: 463 QGKIWLGNEAVEIGLADKIGGFDDCLKALLDYLNIKEYKLHFTKRKISLVDSLKNNISNI 522

Query: 267 SISSLLEDTIPLMKQTKVQGLW 288
             ++ + + + +++  K + ++
Sbjct: 523 PFTAEISNELNMIQANKYKPMY 544



 Score = 58.1 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 73/183 (39%), Gaps = 3/183 (1%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
           +  E +++I++ ++   +I+ +     +A   + +    + +   K VI     +     
Sbjct: 73  DFKEALKKINQTETVEEVILDVDKMELTAVQIDELKDLFKDMNKNKKVIALASNLDNIKY 132

Query: 112 YLISCASN-IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFS 168
            +   A    +  +  S +   G    + Y K   DK+GV +  +     K+  E     
Sbjct: 133 RIAMLADTIYMYNSLNSSMLLKGYSRSFIYFKKLFDKIGVKVNVLHIGDYKSAGENYHKE 192

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
           E++ +    +  + D     F+  + + RN+   + L+  D  +    +AK+ GLID + 
Sbjct: 193 EMSEEQRTSITRIYDKMLENFIDEIKDRRNVDIKEKLLNGDLVLINHIKAKEYGLIDGIS 252

Query: 229 GQE 231
             +
Sbjct: 253 NLD 255


>gi|83945422|ref|ZP_00957770.1| signal peptide peptidase SppA [Oceanicaulis alexandrii HTCC2633]
 gi|83851256|gb|EAP89113.1| signal peptide peptidase SppA [Oceanicaulis alexandrii HTCC2633]
          Length = 598

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 61/284 (21%), Positives = 122/284 (42%), Gaps = 17/284 (5%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------DSQELIERIERISR 62
           SLV + V +   +      +P +A I  +G I                  L + ++  +R
Sbjct: 284 SLVEIAVYHRQMTPPAAPQAPVIALIEAQGDIVTGASEAGFGAVSVGGDTLADALDAAAR 343

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNII 121
                A+I+ + SPGGS  A + I+ A+ + +     +   +  MAAS GY I+  ++ I
Sbjct: 344 APDVAAIILRIDSPGGSPIASDQIWDAVMRARQSGTPVIASMGAMAASGGYYIAAPADRI 403

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-PMKAEPSPFSEVNPKAVQMMQD 180
           +A  ++L GSIG+      +   L ++G++++ +          S     +       + 
Sbjct: 404 IANASTLTGSIGMFGGKFVIDEALGRVGLNLEPLHVGGEYALAQSVSQPWSEAQEAGYRA 463

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           + +  Y  F R  +E R++P  +   L+ GR+WTG +A ++GL+D +GG +    S   L
Sbjct: 464 LAEDVYEDFTRRAAEGRDLPLARIQTLARGRVWTGRQALELGLVDEIGGFDAALASAQEL 523

Query: 241 GVDQSIRKI--KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282
               + + +  K +    +        L +S    ++   + + 
Sbjct: 524 AGLSANQPVRLKRYPARPDGLEALQALLGVSVEGVESAAALNRL 567



 Score = 78.9 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 98/302 (32%), Gaps = 25/302 (8%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPH---VARIAIRGQIEDSQ--------------ELI 54
           +++  +  L       +      SP    V  I +R    D                EL 
Sbjct: 28  FLIFLIGGLIGAALEDAGDAALTSPGRNMVLTIDLRTPRLDQPSASPFAFAEPLSMVELS 87

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114
             +E    D   +A+ V  ++    A   E I   +  + +    +    +       L 
Sbjct: 88  RALEHARTDSRVSAVFVRANTLSLPAAQAEEISALLAALSDAGKPVIAHAQGFEGGSVLP 147

Query: 115 SCAS---NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSE 169
             A    + I   +T+   ++G+  +  ++    ++ GV  + ++    K   +      
Sbjct: 148 YLAVGGADEIWMQDTASFTAVGLAVETLFLGGLFEQFGVEPQMIQLHEYKNAADTLTRDG 207

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
                 +     + S Y   +  ++ +R +  +      +   ++  EA  +GLID +G 
Sbjct: 208 YTDAHREATLSWLGSIYEVALETIAPARGLEVETLRSRLEAGPYSAEEALDLGLIDRLGH 267

Query: 230 QEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
             E  QS+        S+ +I  ++              + +L+E    ++      G  
Sbjct: 268 AAEARQSVLDRAGSGSSLVEIAVYHRQMTPPAA--PQAPVIALIEAQGDIVTGASEAGFG 325

Query: 289 AV 290
           AV
Sbjct: 326 AV 327


>gi|260431642|ref|ZP_05785613.1| peptidase, family S49 [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415470|gb|EEX08729.1| peptidase, family S49 [Silicibacter lacuscaerulensis ITI-1157]
          Length = 265

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 115/257 (44%), Gaps = 19/257 (7%)

Query: 36  PHVARIAIRGQI-------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           P VA + + G I            L   +E+  R    +A+ + ++SPGGS      I  
Sbjct: 12  PVVAVVRLSGAIGMAGRASMSDTALAPVLEKAFRKGKPSAVALEINSPGGSPVQSSLIGA 71

Query: 89  AIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
            I+++ +    PV   V ++AAS GY ++ +++ I A ++S++GSIGV+        F+ 
Sbjct: 72  RIRRLADELNVPVHAFVEDVAASGGYWLAASADRIWADDSSVLGSIGVISSGFGAHVFIA 131

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           + G+  +   +   K+   PF+   P+ V  ++ +++  +  F+  V   R    D+T  
Sbjct: 132 RQGIERRVHTAGQSKSMLDPFAPEKPEDVARLRGLLEDIHQNFIAHVKARRGDRLDETAD 191

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           L  G +W    A+ +GLID +   +   Q L+         + + +   K  W       
Sbjct: 192 LFTGEVWLARRAQDLGLIDGIAHLKPKMQELFG-----DKVRFRRYGLRKPIWSRF---- 242

Query: 267 SISSLLEDTIPLMKQTK 283
             + + +D + ++++  
Sbjct: 243 -GADMAQDALAMLEERA 258


>gi|91205146|ref|YP_537501.1| Signal peptide peptidase SppA, 36K type [Rickettsia bellii
           RML369-C]
 gi|157827519|ref|YP_001496583.1| Signal peptide peptidase SppA, 36K type [Rickettsia bellii OSU
           85-389]
 gi|91068690|gb|ABE04412.1| Signal peptide peptidase SppA, 36K type [Rickettsia bellii
           RML369-C]
 gi|157802823|gb|ABV79546.1| Signal peptide peptidase SppA, 36K type [Rickettsia bellii OSU
           85-389]
          Length = 304

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 63/265 (23%), Positives = 116/265 (43%), Gaps = 18/265 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPG 77
           ++S   D+   VA + + G I            + L E IE+  +     AL + ++SPG
Sbjct: 30  FASIFGDSKEVVAVLRLNGVIGKVSTVQSGLTLESLNELIEKAFKIKKLKALCLIINSPG 89

Query: 78  GSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           GS    E I + I+ +  +++  + + + +MAAS GY ++CA + I A  +S++GSIGV+
Sbjct: 90  GSPVQSELIAKRIRTLAKEHKIKIYSFIEDMAASGGYWLACAGDQIYALHSSIIGSIGVV 149

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                    ++KLG+  +       KA   PF  +N + V++++D+    Y  FV  V  
Sbjct: 150 SSGFGFHEAINKLGIERRVYTEGKNKAVLDPFKPINKEDVKIIKDLQKQVYEHFVDYVKT 209

Query: 196 SRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
            R     +   +  +G  W G  A   GLID +G      ++ +   +         +  
Sbjct: 210 RRVGKLTQQDDILFNGEFWAGRTALDYGLIDDLGDMYSTMKAKFGDNIKF------QYLC 263

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLM 279
            K  W      ++   L ++    +
Sbjct: 264 AKQPWIKKKLGMASKILTDNFADSL 288


>gi|332559551|ref|ZP_08413873.1| Peptidase S49 [Rhodobacter sphaeroides WS8N]
 gi|332277263|gb|EGJ22578.1| Peptidase S49 [Rhodobacter sphaeroides WS8N]
          Length = 250

 Score =  106 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 107/251 (42%), Gaps = 14/251 (5%)

Query: 41  IAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
           I ++G I          Q L   IE+  R      + + ++SPGGS      I   I+++
Sbjct: 2   IRLQGMIASGPRGGLSDQGLAAVIEKAFRRGKPAGVALVINSPGGSPVQSSLITARIRRL 61

Query: 94  KNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
              K   V   V ++AAS GY ++CA + I   E+SLVGSIGV+F       F+ + G+ 
Sbjct: 62  AFEKGVRVHAFVEDVAASGGYWLACAGDEIWVDESSLVGSIGVIFSSFGFHEFMARNGIE 121

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
            +   +   K+   PF    P+ V+ ++ + +  +  F+  V  +R    D    L +  
Sbjct: 122 RRVHTAGRSKSLADPFLPEKPEDVERLKALQEPIHRAFIEHVKRNRGARLDLNADLFNAD 181

Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           +WTG EA ++GL D V       Q +Y         ++  +   +        +L+  +L
Sbjct: 182 VWTGQEAVRLGLADGVAHLVPKLQEIYG-----DKVRLVPYGQRRPLLQRLGMSLAGQAL 236

Query: 272 LEDTIPLMKQT 282
            E     +   
Sbjct: 237 AEVENRALWAR 247


>gi|303245308|ref|ZP_07331592.1| signal peptide peptidase SppA, 36K type [Desulfovibrio
           fructosovorans JJ]
 gi|302493157|gb|EFL53019.1| signal peptide peptidase SppA, 36K type [Desulfovibrio
           fructosovorans JJ]
          Length = 433

 Score =  106 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 102/216 (47%), Gaps = 10/216 (4%)

Query: 39  ARIAIRGQ----------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           A + + G           I  ++E+   + + + D S  A+++ + SPGG+    E +  
Sbjct: 56  AVVDMSGPLSKDGSYWWGIGSTREIGAGLLQAAADPSVKAILLDVDSPGGTVDGTEELAG 115

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
             + V  +KP+     ++ ASA Y I   +  I    ++ +GSIGV+  +     + +++
Sbjct: 116 IARIVAAQKPLYVYASDLMASAAYWIGSQAKEIGTQASAQIGSIGVVLTHTDWSGWDEQM 175

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           GV I  + +   KA  +P   ++ +A   +Q  +D  Y  F+  V+  R +  ++ + ++
Sbjct: 176 GVDITYLTAGHFKAMGNPDEPLSDEARAYLQQQLDEVYGLFLDAVAAGRRVSREQAMAMA 235

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           DG+I+ G +A ++GL+D +  + +    +       
Sbjct: 236 DGKIFLGRQALELGLVDRLESRADFINRIVQEVHMD 271


>gi|149194025|ref|ZP_01871123.1| proteinase IV [Caminibacter mediatlanticus TB-2]
 gi|149135978|gb|EDM24456.1| proteinase IV [Caminibacter mediatlanticus TB-2]
          Length = 300

 Score =  106 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 129/287 (44%), Gaps = 14/287 (4%)

Query: 3   FVLKKIKTRYVMLS----------LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-- 50
           F +K +K + V+             +   +    + +++  + P+VA I I   I     
Sbjct: 14  FKIKALKEKVVLFGVIILIIAEIIFLGSLLKKTLFPTNINLHKPYVAVININKTITVDYI 73

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
            ++ ++++ + +D +    ++  ++PGGS  A +     ++ V  +K V   V  MAAS 
Sbjct: 74  DKITKKMDALLKDKNCKEFLLVFNTPGGSPSASDEFNAYLKYVNKKKRVNVYVESMAASG 133

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           GY I  A   IVA + ++VGSIGV+  +  +K   DK+G+   S+     K   S F + 
Sbjct: 134 GYYIISAIKPIVANKNAVVGSIGVIMPHFVLKKLADKIGIEEDSLTIGKYKEPVSLFRKF 193

Query: 171 NPKAVQMMQDV-VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
           + K  + ++   +  +Y  F++ V++ RNI  DK    +DG+I+  +  K + L+D +  
Sbjct: 194 SDKDKEYLKTHLLLPTYENFLKTVAKDRNISVDKLKQYADGKIYVASIVKGI-LVDKIST 252

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
             +V + +                  K  +F    +  I   L++ +
Sbjct: 253 LIDVKEEIKKRLGKNIKFYNISLEKQKVPFFNIKLSSDIGEFLKEIV 299


>gi|326408432|gb|ADZ65497.1| Na+/H+ antiporter NhaA [Brucella melitensis M28]
 gi|326538147|gb|ADZ86362.1| Na+/H+ antiporter NhaA [Brucella melitensis M5-90]
          Length = 736

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 114/295 (38%), Gaps = 24/295 (8%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64
           L      ++              +  + + G I                   +E+   D 
Sbjct: 443 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 502

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122
            A A+ +S++SPGG       I+R I+ +  +++K V   V ++AAS GY+I+ A + I+
Sbjct: 503 HAPAVAISINSPGGVPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 562

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A  +S+VGSIGV+         L K+GV  +   +   K    PF     + ++ ++ + 
Sbjct: 563 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 622

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              +  F+ +V E R         L  G  WTG  A  +GLID +G      +  Y    
Sbjct: 623 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMLSFLRKTYG--- 679

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291
                K+K   P +      L  + + S   +   +       GL       A+W
Sbjct: 680 --DKVKLKLIQPQRGLLGRKLSGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 731


>gi|255263417|ref|ZP_05342759.1| peptidase S49 [Thalassiobium sp. R2A62]
 gi|255105752|gb|EET48426.1| peptidase S49 [Thalassiobium sp. R2A62]
          Length = 264

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 109/240 (45%), Gaps = 13/240 (5%)

Query: 30  HVEDNSPHVARIAIRGQIE------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                 P V+ + ++G I       D   L   +++       +A+ + ++SPGGS    
Sbjct: 6   PFRKTKPSVSVVRLQGVITSGGRGLDDASLAPLLKKAFSKGKPSAVALVINSPGGSPVQS 65

Query: 84  EAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
             I   I+++   K  PV   V ++AAS GY ++ A++ I    +S+VGSIGV+     +
Sbjct: 66  SLIGARIRRLSQEKDIPVFAFVEDVAASGGYWLASAADEIFVDPSSVVGSIGVISAGFGL 125

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              + + GV  +   +   K+   PF    P  V+ ++ +++  ++ F   VSE R    
Sbjct: 126 NEAIGRYGVERRVYTAGKSKSMLDPFQAEKPADVKRLKGMLEQIHNSFKSHVSERRAGKL 185

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
           D+T  L  G IW GA + +VGL D VG    V +  +         K + ++  ++ +  
Sbjct: 186 DETQDLFTGEIWVGAASIEVGLADAVGHLVPVMKDRFG-----EDVKFRSFDRKRSLFQR 240


>gi|158312662|ref|YP_001505170.1| signal peptide peptidase SppA, 36K type [Frankia sp. EAN1pec]
 gi|158108067|gb|ABW10264.1| signal peptide peptidase SppA, 36K type [Frankia sp. EAN1pec]
          Length = 651

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 106/232 (45%), Gaps = 1/232 (0%)

Query: 39  ARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
           A +   G +  +  +       +RD S  A +  + SPGGS  A + + R I++ ++   
Sbjct: 363 ATMPFSGPVLAADAVTAAFRAAARDPSVAAAVFRVESPGGSYVASDVVRREIERFRSTGR 422

Query: 99  VIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
            +   +  +AAS GY ++ A ++IVA   +L GSIGV      V+   DK+G+   +V +
Sbjct: 423 PVVVSMGSVAASGGYFVALAGDVIVANPGTLTGSIGVFGGKQVVRDLFDKVGIGFGAVAA 482

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                  SP           + + +D  Y  FV  V+++R + +     L+ GR+WTGA+
Sbjct: 483 GENALMMSPRQPFTQAGRAKLDEFLDRVYADFVDKVAQARRMSHGDAHELARGRVWTGAD 542

Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           A + GL+D +GG        +A     +    +    PK+  F  L+    S
Sbjct: 543 AHRHGLVDELGGLAHAIDLAWARAGLPAGETPRVRLTPKSSVFDRLRAPKSS 594



 Score = 80.4 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 90/201 (44%), Gaps = 7/201 (3%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
              +E+++ + R +RD+ A+ ++  +++ G      + I  A+ + +          +  
Sbjct: 51  TGLREIVDGLRRAARDERASVVVAHVAACGMPLARVQEIRDAVAEFRASGGAAYAYADTF 110

Query: 108 ASAG-----YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
              G     Y ++CA + I  A    +G  GV  + P+V+  LD+LGV+++  +    K 
Sbjct: 111 GEFGGGTVAYYLACAFDEIWLAPPGDLGLTGVAMETPFVRDALDRLGVTVEIGQRHEYKN 170

Query: 163 EPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKK 220
             +     +  P   + +  +VDSS    V  +++SR +  D+   + D     G  A  
Sbjct: 171 AVNTLVERDFTPAHREALARIVDSSAEQIVAGIAQSRGLSADQVRRMIDIAPLAGHVALS 230

Query: 221 VGLIDVVGGQEEVWQSLYALG 241
            GL+D +G ++E+++      
Sbjct: 231 AGLVDRIGYRDEIYEYARERA 251


>gi|265999603|ref|ZP_05467088.2| Na(+)/H(+) antiporter nhaA [Brucella melitensis bv. 2 str. 63/9]
 gi|263094920|gb|EEZ18628.1| Na(+)/H(+) antiporter nhaA [Brucella melitensis bv. 2 str. 63/9]
          Length = 723

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 114/295 (38%), Gaps = 24/295 (8%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64
           L      ++              +  + + G I                   +E+   D 
Sbjct: 430 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 489

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122
            A A+ +S++SPGG       I+R I+ +  +++K V   V ++AAS GY+I+ A + I+
Sbjct: 490 HAPAVAISINSPGGVPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 549

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A  +S+VGSIGV+         L K+GV  +   +   K    PF     + ++ ++ + 
Sbjct: 550 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 609

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              +  F+ +V E R         L  G  WTG  A  +GLID +G      +  Y    
Sbjct: 610 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMLSFLRKTYG--- 666

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291
                K+K   P +      L  + + S   +   +       GL       A+W
Sbjct: 667 --DKVKLKLIQPQRGLLGRKLSGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 718


>gi|119385040|ref|YP_916096.1| peptidase S49 [Paracoccus denitrificans PD1222]
 gi|119374807|gb|ABL70400.1| peptidase S49 [Paracoccus denitrificans PD1222]
          Length = 267

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 104/250 (41%), Gaps = 18/250 (7%)

Query: 37  HVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
            VA + ++G I              L   +ER  +     A+ ++L+SPGGS      I 
Sbjct: 11  TVAVLRLQGAIGVAGRGGPGLSDAALAPLLERAFKRRKPAAVALALNSPGGSPVQSSLIG 70

Query: 88  RAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
             I+++   +  PV   V ++AAS GY ++ A++ I A ++S++GSIGV+         +
Sbjct: 71  ARIRRLAEERGIPVHAFVEDVAASGGYWLATAADYIWADDSSVLGSIGVISSGFGFVELI 130

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            + G+  +   +   K+   PF    P+ ++ +  ++   +  F   V   R     +  
Sbjct: 131 QRHGIERRVHTAGRSKSMLDPFRPQTPEDIERLDRLLGPIHEAFKEQVRARRGNRLPEDR 190

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L  G IWTG EA ++GL D +       + LY         +++     +         
Sbjct: 191 DLFTGEIWTGREAVELGLADGIAHLVPKMRELYGK-------EVRFLTYGQRVPLLRRFG 243

Query: 266 LSISSLLEDT 275
           LS    ++  
Sbjct: 244 LSADDFIDGI 253


>gi|86748216|ref|YP_484712.1| peptidase S49 [Rhodopseudomonas palustris HaA2]
 gi|86571244|gb|ABD05801.1| Peptidase S49 [Rhodopseudomonas palustris HaA2]
          Length = 302

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 112/273 (41%), Gaps = 26/273 (9%)

Query: 30  HVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSA 80
               + P V  + + G I              + + +ER     +A A+ ++++SPGGS 
Sbjct: 25  RFRSDIPVVPVVRLSGVIGAVTPLRPGMSLAGVAKLLERAFATRNAKAVALAINSPGGSP 84

Query: 81  YAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
                I+  I+ +   K  PV   V ++AAS GY+I+C ++ I    +S+VGSIGV+   
Sbjct: 85  VQSRLIYLRIRALAAEKKLPVYAFVEDVAASGGYMIACGADEIYCDPSSIVGSIGVVGGS 144

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  + K+GV  +   +   KA+  PF   +P  V  ++ +    +  F+ LV +SR 
Sbjct: 145 FGFQELIKKIGVERRLYTAGEHKAQLDPFLPEDPGDVARVKALQQEIHALFISLVKDSRG 204

Query: 199 IPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
                    L  G  W GA +  +GL D +G    V +  +   V   +           
Sbjct: 205 ARLKGDDAKLFSGEYWAGATSVSLGLSDAIGDLRAVLRDKFGDKVRTPVI---------- 254

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
                     +S L+  +     +  + G  A+
Sbjct: 255 ----AAPTGLLSGLMRKSSGAGTEASLDGFAAL 283


>gi|312115016|ref|YP_004012612.1| peptidase S49 [Rhodomicrobium vannielii ATCC 17100]
 gi|311220145|gb|ADP71513.1| peptidase S49 [Rhodomicrobium vannielii ATCC 17100]
          Length = 307

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 62/285 (21%), Positives = 112/285 (39%), Gaps = 26/285 (9%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSS 75
               +    +   +  + + G I  +  L            ++R        A+I+ ++S
Sbjct: 25  IFPGNLFSSSRTTIPVVRLSGAIGAASPLRQGLTLSGCATALDRAFAAKG-PAVILQINS 83

Query: 76  PGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           PGGS      I+  I  +K    K V     ++AAS GY+I+CA++ I A  +S+VGSIG
Sbjct: 84  PGGSPVQSRLIYDRIVALKEEHDKKVYAFCEDVAASGGYMIACAADEIYADGSSIVGSIG 143

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V+         + KLG+  +   S   K +  PF    P+ +  ++ +    +  F+ LV
Sbjct: 144 VISAGFGFVHLIHKLGIDRRVYTSGENKMQLDPFRPEKPEEISRLKRLQAIVHEDFIALV 203

Query: 194 SESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
            ESR      +   L  G  W G +A ++GLID +                    ++K  
Sbjct: 204 KESRGDRIANSGDNLFTGEFWAGRQALELGLIDGIIDL-----RAKMRSEYGDKVRLKLI 258

Query: 253 NPPKNYWFCDLK--------NLSISSLLEDTIPLMKQTKVQGLWA 289
           +  + ++              + IS        L+   + + +WA
Sbjct: 259 STERGFFRRKAGVGVSVSGTGMGISFAQGFADDLISALEERAIWA 303


>gi|115526406|ref|YP_783317.1| peptidase S49 [Rhodopseudomonas palustris BisA53]
 gi|115520353|gb|ABJ08337.1| peptidase S49 [Rhodopseudomonas palustris BisA53]
          Length = 300

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 113/267 (42%), Gaps = 17/267 (6%)

Query: 36  PHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
           P V  + + G I              L   +ER      A A+ ++++SPGGS      I
Sbjct: 28  PVVPVVRLSGVIGAVTPLRPGLSLAGLARTLERAFAVPHAKAVALAINSPGGSPVQSRLI 87

Query: 87  FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           +  I+++   K  PVI  V ++AAS GY+++CA + I    +S++GSIGV+         
Sbjct: 88  YLRIRQLAAEKKLPVIAFVEDVAASGGYMLACAGDEIYCDPSSILGSIGVVGGTFGFPEL 147

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K+GV  +   +   KA+  PF   +P  V  ++ +    +  F+ LV +SR I     
Sbjct: 148 LKKIGVERRIYTAGEHKAQLDPFLPEDPDDVARVKALQREIHAIFIALVKDSRGIRLKGD 207

Query: 205 L-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              L  G  W G  +  +GL D +G    + ++ +   V   +       PP        
Sbjct: 208 EGKLFSGEYWAGDSSIALGLADGIGDLRSILRTRFGDKVLTPVV-----APPTGMLAGLF 262

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWAV 290
              + ++ +  ++        Q + A+
Sbjct: 263 NRRAAATSMLGSVDAAADWPDQVISAL 289


>gi|302035495|ref|YP_003795817.1| putative phage minor capsid protein C [Candidatus Nitrospira
           defluvii]
 gi|300603559|emb|CBK39889.1| putative Phage minor capsid protein C [Candidatus Nitrospira
           defluvii]
          Length = 404

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 14/221 (6%)

Query: 30  HVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSP 76
                   +A + I G +                Q++  +I+    D +  A+++ + SP
Sbjct: 50  SPPVAGGSIAVLPIYGTLVRRTVGLEAASGLTSYQDIAAQIDTAIADPAVAAIVLDIDSP 109

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GG +     +   ++     KPV    ++MA SA Y I  A++      T  VGSIGV+ 
Sbjct: 110 GGESGGVFDLADRVRAAAQVKPVWALANDMAYSAAYAIGSAASRFFVTRTGGVGSIGVIA 169

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
            +        + GV   +V +   K + +P   ++ +A   ++  VD  Y  FV  V+  
Sbjct: 170 MHADQSVRDAQDGVRYTTVFAGARKNDLNPHEPISDEAHAFLKSEVDRIYGLFVDTVASH 229

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           R++  +       G ++ G +A   GL D VG  ++V   L
Sbjct: 230 RSLSSEAVRATEAG-VFFGNDAVAAGLADAVGNFDDVLNEL 269


>gi|16081247|ref|NP_393553.1| protease (pspA) related protein [Thermoplasma acidophilum DSM 1728]
 gi|10639220|emb|CAC11222.1| protease (pspA) related protein [Thermoplasma acidophilum]
          Length = 230

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 37  HVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           ++ R  I G I     +             S   L++  +S GG A A + +F  I+K++
Sbjct: 2   YILRTRIEGTITQQLYRSYYPIFSFAENKRSVAGLVLVFNSGGGDAVASQLMFEMIRKIR 61

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
            +KPV + +  + AS  Y IS  S+ I + +TSL+GSIGV+   PY+KP LDK+GV +K 
Sbjct: 62  KKKPVYSFIQGICASGAYWISAGSSKIYSLDTSLIGSIGVISMIPYIKPLLDKIGVEMKI 121

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
            K    K   S + E + +  +    V++  Y  F   V   RNIP DK   ++ G+I++
Sbjct: 122 YKVGKYKDMLSSYREPSDEENEHYMRVLNDVYRKFRDSVMTERNIPEDKMEDIAQGQIFS 181

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
            + A +  LID +G  + +   +Y     +   K +D  P + +    L 
Sbjct: 182 PSMAMENRLIDGIGTMDSMMDDMYRQLGRK--YKTRDILPRRPWIMRFLG 229


>gi|110667987|ref|YP_657798.1| signal peptide peptidase [Haloquadratum walsbyi DSM 16790]
 gi|109625734|emb|CAJ52167.1| probable signal peptide peptidase [Haloquadratum walsbyi DSM 16790]
          Length = 319

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 69/260 (26%), Positives = 121/260 (46%), Gaps = 20/260 (7%)

Query: 21  TVVYFSWSSHVEDNSPHVARIAIRGQI---------------EDSQELIERIERISRDDS 65
            V   +     +    +VA++ I G I                 + +++ERIE    DD+
Sbjct: 37  IVAQLTRGRLGDAEEYNVAKVIISGPIQRDRGRPSPLSASGASAADDIVERIEDADDDDA 96

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
             AL+V L++PGG     + I RA   ++   P I    +  AS GY I+   + + A +
Sbjct: 97  IEALLVELNTPGGEVLPSDDIRRA--AIEFDGPTIAYATDTCASGGYWIASGCDEMWARD 154

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
            SL+GSIGV+   P      DKLG+S +   +   K    P  E+     + +Q +VD  
Sbjct: 155 VSLIGSIGVVGSRPNASGLADKLGISYEQFTAGEYKDAGVPLREIEDGEREYLQSIVDGY 214

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  FV  VSE R++  ++    ++ RI+ G +A ++GLID +G +++V   +  L    +
Sbjct: 215 YDQFVETVSEGRDMDPEQIRD-TEARIYLGNDALEIGLIDELGTEDDVKDRIENL--IDA 271

Query: 246 IRKIKDWNPPKNYWFCDLKN 265
             +I+++ P ++        
Sbjct: 272 EPEIQEFKPNRSLAERLSIG 291


>gi|190890590|ref|YP_001977132.1| peptidase [Rhizobium etli CIAT 652]
 gi|190695869|gb|ACE89954.1| peptidase protein [Rhizobium etli CIAT 652]
 gi|327192814|gb|EGE59741.1| peptidase protein [Rhizobium etli CNPAF512]
          Length = 286

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 61/287 (21%), Positives = 117/287 (40%), Gaps = 21/287 (7%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS----------QELIERIERISRDDSATA 68
               +          +   +  + ++G I               +   +E+      A A
Sbjct: 1   MAGFLRKLLPKRFRKDGVTIPVVRLQGAIISGGGQFRPTLNLANVAPVLEKAFAMKDAPA 60

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
           + ++++SPGGS      IF  I+++  + +K V+  V ++AAS GY+I+ A + I+A  T
Sbjct: 61  VAIAINSPGGSPVQSRLIFTRIRELAREKKKKVLIFVEDVAASGGYMIALAGDEIIADAT 120

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           S+VGSIGV+         L K+GV  +   +   K    PF     K ++ ++ +    +
Sbjct: 121 SIVGSIGVVSGGFGFPELLKKIGVERRVYTAGENKVILDPFQPEKEKDIEYLKSLQLEIH 180

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
             F+ +V E R         +  G  W+G    ++GLID +G   +  +  Y        
Sbjct: 181 QVFIAMVRERRAGKLKDDATVFSGLFWSGTRGLELGLIDGLGDMRQELKRRYGQK----- 235

Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLED----TIPLMKQTKVQGLWA 289
            K++     +      +  +S  SL          L++  + + LW+
Sbjct: 236 TKLELVTASRGLLGRRIPGVSPVSLEGAGSSLATGLVEAAEERALWS 282


>gi|269468535|gb|EEZ80189.1| periplasmic serine protease, ClpP class [uncultured SUP05 cluster
           bacterium]
          Length = 320

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 58/297 (19%), Positives = 123/297 (41%), Gaps = 22/297 (7%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHV-------EDNSPHVARIAIRGQI-----EDSQELI 54
           + +    +L +     + +             +  SP  A + + G I      ++ + +
Sbjct: 30  RWRMVLTLLFVGYFGFISYLSIEQSDLLEEVLKKESPFAAEVVLSGTIQTSGEINADDAL 89

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGY 112
           E +    +  ++ A+I+ L+SPGGS      I++ I ++  ++ K +   + ++ AS  Y
Sbjct: 90  ELLNDAFKAKNSKAVILRLNSPGGSPVQSSQIYQGILRLKKQHNKKLYVVIDDVCASGCY 149

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            I+ +++ I A E+S+VGSIGV+         + KLG+  +   +   K     FS+ + 
Sbjct: 150 YIAASADAIYADESSIVGSIGVVISSFGAVEAIKKLGIERRLYTAGKHKGLLDAFSDEDK 209

Query: 173 KAV-QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
            A+  + ++++D S+  F+  +  +R         L  G IW G +A+K+GLID +   +
Sbjct: 210 TAIVHIKKNILDKSHQNFINAIKATRGDKLSDHPDLFSGLIWLGKDAEKLGLIDGIADAD 269

Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
            V   +            +     +     +L   S   +       +   +  G  
Sbjct: 270 YVASEIIG-------VDARVIYEKEKTLLEELTEASAKGIALVISNQLISQETIGFL 319


>gi|83309474|ref|YP_419738.1| periplasmic serine protease [Magnetospirillum magneticum AMB-1]
 gi|82944315|dbj|BAE49179.1| Periplasmic serine protease [Magnetospirillum magneticum AMB-1]
          Length = 410

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 61/269 (22%), Positives = 107/269 (39%), Gaps = 16/269 (5%)

Query: 26  SWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVS 72
             S  VE     +A I + G +                 ++ E IE  + D    A+++ 
Sbjct: 46  IPSDDVEVTPDGIAIIPVVGTLVARSGYLGAASGLTAYSDIAETIEAAATDPGIRAILLD 105

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + S GG       +   IQ ++++  KP+     E A SA Y I+C ++ +   +T  VG
Sbjct: 106 VDSSGGEVGGLFDLVDHIQAIRSQCGKPIWAVADEAALSAAYAIACTADRLYVTQTGEVG 165

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+  +        + G++   V +   K + +P   ++  A   +Q  VD+ Y  F 
Sbjct: 166 SIGVVAVHRDESGADAQAGLAWTFVHAGAAKVDGNPHQPLSDSARAALQADVDALYGKFA 225

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
            LV+E R +  D      +  ++ G +A   GL D VG   +    L A     S+R   
Sbjct: 226 TLVAERRRLSPDAVRAT-EAVVYRGDQAVAAGLADKVGTLRQALADLGASLTRPSVRTPV 284

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
              P +        ++ I+     T   +
Sbjct: 285 LSRPKETTMSEQTGDIPINETERSTPGAI 313


>gi|306842302|ref|ZP_07474963.1| Clp protease [Brucella sp. BO2]
 gi|306287581|gb|EFM59035.1| Clp protease [Brucella sp. BO2]
          Length = 255

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 108/243 (44%), Gaps = 14/243 (5%)

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLI 114
           +E+   D  A A+ +S++SPGG+      I+R I+ +  +++K V   V ++AAS GY+I
Sbjct: 14  LEKAFADKHAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMI 73

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A + I+A  +S+VGSIGV+         L K+GV  +   +   K    PF     + 
Sbjct: 74  ALAGDEIIADPSSIVGSIGVVSASFGFPELLKKIGVERRVHTAGSNKVTLDPFQPEKAED 133

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
           ++ ++ +    +  F+ +V E R         L  G  WTG  A  +GLID +G      
Sbjct: 134 IERLKALQLEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFL 193

Query: 235 QSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------ 288
           +  Y         K+K   P +      L  + ++S   +   +       GL       
Sbjct: 194 RKTYG-----DKVKLKLIQPQRGLLGRKLPGIGMNSGSVEPAQIAAHLG-DGLLCVAEEK 247

Query: 289 AVW 291
           A+W
Sbjct: 248 AIW 250


>gi|209548133|ref|YP_002280050.1| peptidase S49 [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209533889|gb|ACI53824.1| peptidase S49 [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 286

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 58/267 (21%), Positives = 113/267 (42%), Gaps = 17/267 (6%)

Query: 37  HVARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
            +  + ++G I               +   +E+      A A+ ++++SPGGS      I
Sbjct: 19  TIPVVRLQGPIVSGGGPFRPALNLANVAPVLEKAFAMKDAPAVAITINSPGGSPVQSRLI 78

Query: 87  FRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           F  I+++  + +K V+  V ++AAS GY+I+ A + I+A  TS+VGSIGV+         
Sbjct: 79  FTRIRELAREKQKKVLVFVEDVAASGGYMIALAGDEIIADSTSIVGSIGVVSGGFGFPEL 138

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K+GV  +   +   K    PF     K ++ ++ +    +  F+ +V E R       
Sbjct: 139 LKKIGVERRVYTAGENKVILDPFQPEKEKDIEYLKSLQLEIHQVFISMVRERRAGKLRDD 198

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP--PKNYWFCD 262
             +  G  W+G    ++GL+D +G   ++ Q L      ++  ++               
Sbjct: 199 AAVFSGLFWSGTRGLELGLVDGLG---DMRQELKRRYGQKTKLELVAAGRGLFGRRVPGV 255

Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWA 289
                 S+       L++  + + LW+
Sbjct: 256 SPVSLESAASGLATGLVEAAEERALWS 282


>gi|218682938|ref|ZP_03530539.1| putative peptidase [Rhizobium etli CIAT 894]
          Length = 286

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 116/269 (43%), Gaps = 21/269 (7%)

Query: 37  HVARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
            +  + ++G I               +   +E+      A A+ ++++SPGGS      I
Sbjct: 19  TIPVVRLQGAIVSGGGQFRPALNLANVSPVLEKAFAMKDAPAVAITINSPGGSPVQSRLI 78

Query: 87  FRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           F  I+++  + +K V+  V ++AAS GY+I+ A + I+A  TS+VGSIGV+         
Sbjct: 79  FTRIRELAREKQKKVLVFVEDVAASGGYMIALAGDEIIADATSIVGSIGVVSGGFGFPEL 138

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K+GV  +   +   K    PF     K ++ ++ +    +  F+ +V E R       
Sbjct: 139 LKKIGVERRVYTAGENKVILDPFQPEKEKDIEYLKSLQLEIHQVFIAMVRERRAGKLKDD 198

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             +  G  W+G    ++GL+D +G   +  +  Y         K++     +  +   + 
Sbjct: 199 AAVFSGLFWSGTRGLELGLVDGLGDMRQELKRRYGQK-----TKLELVTAGRGLFGRRIP 253

Query: 265 NLSI----SSLLEDTIPLMKQTKVQGLWA 289
            +S     S+       L++  + + LW+
Sbjct: 254 GVSPVTLESAASGLATGLVEAAEERALWS 282


>gi|27377645|ref|NP_769174.1| proteinase [Bradyrhizobium japonicum USDA 110]
 gi|27350790|dbj|BAC47799.1| proteinase [Bradyrhizobium japonicum USDA 110]
          Length = 302

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 66/269 (24%), Positives = 114/269 (42%), Gaps = 19/269 (7%)

Query: 38  VARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           V  + + G I              +   +ER     +A A+ + ++SPGGS      I+ 
Sbjct: 32  VPVVRLSGVIGAVTPLRPGMTLAGVARVLERAFSMRNAKAVALVINSPGGSPVQSRQIYL 91

Query: 89  AIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
            I+++   K  PV+  V ++AAS GY+I+CA + I    +S++GSIGV+      +  + 
Sbjct: 92  RIKQLAAEKKLPVLVFVEDVAASGGYMIACAGDEIFCDPSSILGSIGVVGGSFGFQDAIK 151

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTL 205
           +LG+  +   +   KA   PF   NP  V  ++ +    +  F+ LV ESR      +  
Sbjct: 152 RLGIERRLYTAGAHKAMLDPFLPENPDDVAKLKALQREIHQIFIALVRESRGARLKGEDD 211

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD-----WNPPKNYWF 260
            L  G  W GA +  +GL D +G      ++ Y   V   +              K+   
Sbjct: 212 TLFTGEYWAGASSIALGLADGIGDLRSTLRARYGEKVLTPVIAQPTGLLSGLLGRKSPGA 271

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
             L  L   + L D +  +   + + +WA
Sbjct: 272 GQLSALESMAGLPDEL--ISAVETRAIWA 298


>gi|126730495|ref|ZP_01746306.1| peptidase, family S49 [Sagittula stellata E-37]
 gi|126709228|gb|EBA08283.1| peptidase, family S49 [Sagittula stellata E-37]
          Length = 265

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 101/250 (40%), Gaps = 15/250 (6%)

Query: 33  DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
            + P V+ + ++G I          +     +E+  R     A+ + ++SPGGS      
Sbjct: 9   KSRPRVSVVRLQGAISVPARGNLSDRTAAALLEKAFRSKP-DAVALEINSPGGSPVQSSL 67

Query: 86  IFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           I   I+++  +  +     V ++AAS GY I+ A++ I A  +S++GSIGV+        
Sbjct: 68  IGARIRRLSEQHNIPVYAFVEDVAASGGYWIASAADEIWADASSILGSIGVISSGFGAHV 127

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL + G+  +   +   K+   PF     + V  +  ++   +  F+  +   R      
Sbjct: 128 FLQRQGIERRVHTAGKSKSMMDPFRPETEEDVARLNRLLGQLHDTFINQIRARRGEKLAS 187

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              L  G IW G  A   GL D +G    V +  +         + K +   + +     
Sbjct: 188 NPDLFTGEIWVGQAAVDQGLADGIGHLVPVMKQRFG-----DKVRFKRYEAKRPFLPRLG 242

Query: 264 KNLSISSLLE 273
             ++  +L E
Sbjct: 243 TQIAQGALSE 252


>gi|209886071|ref|YP_002289928.1| peptidase S49 [Oligotropha carboxidovorans OM5]
 gi|209874267|gb|ACI94063.1| peptidase S49 [Oligotropha carboxidovorans OM5]
          Length = 297

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 14/268 (5%)

Query: 36  PHVARIAIRGQIEDSQELI---------ERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
           P V  + + G I     L          + +++      A A+ + ++SPGGS      I
Sbjct: 26  PVVPVVRLSGTIGAVTPLRPGLTLAGVSKTLDKAFETKRAQAVALVINSPGGSPVQSRQI 85

Query: 87  FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           +  I+++   K  PV+  V ++AAS GY+I+CA++ I    +S++GS+GV+      + F
Sbjct: 86  YTRIRQLAAAKGIPVLAFVEDVAASGGYMIACAADEIFCDPSSILGSVGVIGGTFGFQDF 145

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           + + G+  +   S   K+   PF   NP  V  ++ +    +  F+ LV  SR       
Sbjct: 146 IKRFGIERRIYTSGEHKSSLDPFLPENPDDVARLKAIQRDIHDDFIALVKRSRGARLKGE 205

Query: 205 LV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              L  G  W G  + ++GL D +G    V ++ +   V   +   K             
Sbjct: 206 EAYLFSGEYWAGNRSIELGLADAIGDLRGVLRARFGETVRMPVIAPKSGLLANLSGRKPG 265

Query: 264 KNLSISSLLEDTIP--LMKQTKVQGLWA 289
               I++ L   +   L+   + + LWA
Sbjct: 266 AGAMIAAGLGAGLGDDLISAIEARALWA 293


>gi|158422526|ref|YP_001523818.1| periplasmic serine protease [Azorhizobium caulinodans ORS 571]
 gi|158329415|dbj|BAF86900.1| periplasmic serine protease [Azorhizobium caulinodans ORS 571]
          Length = 296

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 108/269 (40%), Gaps = 20/269 (7%)

Query: 38  VARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           V  + + G I  +               ++R      A A+ + ++SPGGS      IF+
Sbjct: 28  VPVVRLSGAIGMNSPFRQSLTLAATARLLDRAFAVKRAPAVALVINSPGGSPVQSNLIFK 87

Query: 89  AIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
            I+ +  +  K V   V ++AAS GY+++CA++ I A  +S+VGSIGV+         L 
Sbjct: 88  RIRALAEEKNKRVFAFVEDVAASGGYMLACAADEIYADPSSIVGSIGVVSAGFGFNDMLS 147

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTL 205
           ++GV  +   +   K    PF     + V  +  +    +  F  LV   R      +  
Sbjct: 148 RIGVERRVHTAGTRKVMLDPFQPERAEDVDRLLAIQREVHASFRDLVRSRRGALLKGEED 207

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L  G  W GA+A  +GLID +G    V +  +      +  +     P  N++      
Sbjct: 208 DLFSGEFWVGAQALPMGLIDGLGDLRSVLRERFG-----TDVRTPLIAPSGNWFTRRANG 262

Query: 266 LSISSLLEDTIPLMKQTKVQGL---WAVW 291
           +     L+  I       +  +    A+W
Sbjct: 263 IGAQIGLDGGIGAGFAQGLADVAEERALW 291


>gi|209964969|ref|YP_002297884.1| proteinase SohB, putative [Rhodospirillum centenum SW]
 gi|209958435|gb|ACI99071.1| proteinase SohB, putative [Rhodospirillum centenum SW]
          Length = 291

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 66/280 (23%), Positives = 110/280 (39%), Gaps = 24/280 (8%)

Query: 31  VEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAY 81
            +   P V+ + + G I                  +ER        A+ + ++SPGGS  
Sbjct: 14  GQTPPPIVSVVRLSGIIGGVGGFRPGLTIAATAPLLERAFAPKDQVAVALIINSPGGSPV 73

Query: 82  AGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
               I   I+ +   K  PVI  V ++AAS GY ++CA++ IVA  +S+VGSIGV+ +  
Sbjct: 74  QSALIGGRIRALAEEKKLPVIAFVEDVAASGGYWLACAADEIVADPSSVVGSIGVVSRGF 133

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                L +LG+  +   S   K    PF     + V+ ++ + +  +  F   V   R  
Sbjct: 134 GFPEALRRLGIERRVHTSGTNKNMLDPFQPERAEDVERLKSLQEEVHESFKDWVRRRRGP 193

Query: 200 PYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
                   L  G  WTG     +GL+D +G    V +  Y      +  K++     ++ 
Sbjct: 194 KLTVPEADLFTGEFWTGTRGLTLGLVDRLGDARTVLRERYG-----TEVKLRMVGQRRSL 248

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA------VWN 292
           +       S  S L  +  L       GL +      +W 
Sbjct: 249 FQRLGGGESRLSGLPASADLGAGIAA-GLLSAAEERALWQ 287


>gi|157825673|ref|YP_001493393.1| Signal peptide peptidase SppA [Rickettsia akari str. Hartford]
 gi|157799631|gb|ABV74885.1| Signal peptide peptidase SppA [Rickettsia akari str. Hartford]
          Length = 304

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 65/263 (24%), Positives = 121/263 (46%), Gaps = 13/263 (4%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPG 77
           ++S   D+   +A + + G I            + L E IE+  +     AL + ++SPG
Sbjct: 30  FASVFGDSKEVIAVLRLSGVIGKVSTMQSGLTLESLNELIEKAFKIKKLKALCLIINSPG 89

Query: 78  GSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           GS    E I + I+ +  +N+  + + + +MAAS GYL++C+ + I A+ +S++GSIGV+
Sbjct: 90  GSPVQSELIAKRIRDLAKENKIKIYSFIEDMAASGGYLLACSGDWIYASYSSVIGSIGVV 149

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                    ++KLG+  +       KA   PF  +N + +++++D+    Y  FV  V  
Sbjct: 150 SSGFGFHEAINKLGIERRVYTEGKNKAILDPFKPINKEDLKIIKDLQKHVYEHFVEYVKT 209

Query: 196 SRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD-WN 253
            R     +   +  +G  W G  A   GLID +G    + +  +   +       K  W 
Sbjct: 210 RRVGKLTQQDEILFNGEFWAGQTALDYGLIDGIGDMYSIMKEKFGDNIKFQYLCAKQHWL 269

Query: 254 PPKNYWFCDLKNLSISSLLEDTI 276
             K      + + ++++ L D I
Sbjct: 270 KKKLGMCSKILSDNLANSLIDAI 292


>gi|90420150|ref|ZP_01228058.1| putative peptidase, family S49 [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335484|gb|EAS49234.1| putative peptidase, family S49 [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 291

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 110/272 (40%), Gaps = 23/272 (8%)

Query: 38  VARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           +  + + G I                   + +      A A+ + ++SPGGS      I+
Sbjct: 20  IPVVRLSGMISSGGTALRPSLSLASAAPLLAKAFAHKKAPAVAIVINSPGGSPVQSRLIY 79

Query: 88  RAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           + I+ +  +  K V+  V ++AAS GY+I+CA + I+A  +S+VGSIGV+         +
Sbjct: 80  QRIRDLAEEKDKQVLVFVEDVAASGGYMIACAGDEIIADPSSIVGSIGVVSGSFGFVEAI 139

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            KLG+  +   +   KA   PF    P+ V+ ++ +    +  F+ LV +SR        
Sbjct: 140 AKLGIERRVHTAGSNKATLDPFQPERPEDVEHLKSLQLEVHKTFIDLVKDSRGAKLADHD 199

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L  G  W+G    ++GL+D +G      ++ +   V   + +       +  +      
Sbjct: 200 DLFTGLFWSGLRGLELGLVDRLGDLRGTLRARFGKKVKLELVQA-----KRTLFGRPQPG 254

Query: 266 LSISSLLEDTIPLMKQTKVQGLW------AVW 291
           +       D +  +     +         A+W
Sbjct: 255 VHAGMAAGDGMAAIGAGFAREAMGVAEERALW 286


>gi|296395336|ref|YP_003660220.1| peptidase S49 [Segniliparus rotundus DSM 44985]
 gi|296182483|gb|ADG99389.1| peptidase S49 [Segniliparus rotundus DSM 44985]
          Length = 291

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 108/275 (39%), Gaps = 21/275 (7%)

Query: 30  HVEDNSPHVARIAIRGQI-----------EDSQELIERIERISRDDSATALIVSLSSPGG 78
             +     V+ + + G I            ++Q L   +        A A+ + ++SPGG
Sbjct: 19  RKKPAGKTVSVVRLEGVIRAGGGPFGRGALNAQNLEAPLVDAFSASEAVAVAIVINSPGG 78

Query: 79  SAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           S      +   I+++  +  KPV+    ++AAS GY ++CA++ I  +  +++GSIGV+ 
Sbjct: 79  SPAQSALVGDRIRQLSAKHEKPVLAFCEDVAASGGYWLACAADEIFVSPGTVIGSIGVVS 138

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
               +   ++KLG+  +   +   K    PF     + V  +  +    +  F+  V   
Sbjct: 139 SSFGLTEAIEKLGLERRVHAAGTNKVRLDPFLPEKEEDVSWLSGMQADIHQVFIDWVKTR 198

Query: 197 RNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
           R      K   L +  +W G  A ++G+ D VG    V    +         K  +  P 
Sbjct: 199 RGAKLAGKDDELFNADVWIGKRAVELGVADAVGSLHSVLAERF------PEAKPHEIKPK 252

Query: 256 KNYWFCDLKNLSISSLLEDTIPLMK-QTKVQGLWA 289
           +          S+  +    +  +    + + +W+
Sbjct: 253 QQLLQRLGLTASVEDMTLRALDGVVCAVERRAMWS 287


>gi|294085840|ref|YP_003552600.1| peptidase S49 [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292665415|gb|ADE40516.1| peptidase S49 [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 280

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 102/252 (40%), Gaps = 18/252 (7%)

Query: 33  DNSPHVARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGSAYA 82
              P V  + + G I  S          + +  ++++      A A+ + ++SPGGS   
Sbjct: 12  KKKPVVPVVRLGGVIAASGSGMRRGISLETVEPQLKKAFSIKRAKAVALIINSPGGSPVQ 71

Query: 83  GEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
              I R I+ +  +   PV+    ++AAS GY ++ +++ I A   S++GSIGV+     
Sbjct: 72  SSLIGRRIRDLAKRADVPVLAFCEDVAASGGYWLAASADEIYADPASIIGSIGVVSAGFG 131

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               + K+GV  +   +   K    PF     + V+ ++ +    +  F+  +   R   
Sbjct: 132 FDKAIKKIGVDRRVHTAGESKMILDPFQPEQSEEVERLKALQAEIHTQFIAHIENRRGAK 191

Query: 201 YDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
                  L  G  WTG  A K+GL+D VG   +   S +         ++    P +   
Sbjct: 192 LKGDRAELFSGAFWTGETAVKLGLVDAVGEIRQTINSRFG-----DDTELMMIEPKRKLL 246

Query: 260 FCDLKNLSISSL 271
              L NLS    
Sbjct: 247 PFGLTNLSGQMA 258


>gi|291060353|gb|ADD73088.1| signal peptide peptidase SppA, 67K type [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 598

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 113/268 (42%), Gaps = 14/268 (5%)

Query: 35  SPHVARIAIRGQIED----------SQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
              V  I + G I            S E+   ++    D    A+++ + S GG  +A E
Sbjct: 316 QDQVGIIHLAGPIAAHRDTELGGTISDEVSALLDVAMSDPDIKAVVLRIDSGGGEVFASE 375

Query: 85  AIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            I RA+ + K   +KPVI  +  +AAS  Y ++ A++ I A+  ++ GSIGVL   P  +
Sbjct: 376 RIRRALARAKRRGKKPVIVSMGAIAASGAYWVASAADYIFASPYTITGSIGVLSVLPTFE 435

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
            FL++               +PS       +    MQ  V ++Y  F+ +VS  RN+  D
Sbjct: 436 TFLERYAGITVDSVQVHGVRQPSLLRSGTAEDTARMQLDVMATYRTFLSVVSAGRNLTLD 495

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           +   +++GRI+ G +A  +GL+D +GG +E           +              +  +
Sbjct: 496 RVAAVAEGRIYAGEDAVSLGLVDALGGLDEAVAHAAKESHCRQYS--VRVLKRSATYGEE 553

Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWAV 290
                   L + ++   ++  +  L  +
Sbjct: 554 FLQSLWDVLQKRSLAFGERVIIGELLQL 581



 Score = 63.1 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 88/265 (33%), Gaps = 18/265 (6%)

Query: 41  IAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE---AIFRAIQKVKNRK 97
           +  +G      ++ + +   + D    ++   LS+  G  +       +  A+ + K  K
Sbjct: 79  LNPKGSAILLSDITQALRNAATDRRIESVFFDLSNMSG--WTSGHFVEMESALSEYKKSK 136

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +       + A Y I+  ++ I+      V   G   +  +     +K+GV    V +
Sbjct: 137 KPLYVFSTSYSLADYYIASFADEIILDPMGSVDLSGFYTETLFYGGMEEKIGVRWNVVHA 196

Query: 158 SPMKAE--PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT- 214
              K         + +P+  +  Q V    +  ++  VS +R +        +D R+   
Sbjct: 197 GVYKGMAEIFSRKDFSPEVRRNYQSVFARLWQQYLSDVSRNRALEVQHLARYADRRLELL 256

Query: 215 -------GAEAKKVGLIDVVGGQEE---VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
                     A    L+  V   +E     + L     + +   +   +  ++     ++
Sbjct: 257 QKYNGDGARTALAEKLVTRVCSYDEAGVALKFLKEDDYESAKNFVGLDDYNRDRAQRQVQ 316

Query: 265 NLSISSLLEDTIPLMKQTKVQGLWA 289
           +      L   I   + T++ G  +
Sbjct: 317 DQVGIIHLAGPIAAHRDTELGGTIS 341


>gi|148253845|ref|YP_001238430.1| putative serine protease SohB [Bradyrhizobium sp. BTAi1]
 gi|146406018|gb|ABQ34524.1| putative serine protease SohB [Bradyrhizobium sp. BTAi1]
          Length = 283

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 105/221 (47%), Gaps = 12/221 (5%)

Query: 34  NSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGE 84
            +P V  + + G I     L          + +ER     +A A+ + ++SPGGS     
Sbjct: 11  GAPVVPVVRLSGVIGAVTPLRPGLTLAGVAKMLERAFAMRNAKAVALVINSPGGSPVQSR 70

Query: 85  AIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            I+  I+++   K  PV+  V ++AAS GY+I+CA + I    +S++GSIGV+     ++
Sbjct: 71  QIYLRIRQLAAEKKLPVLVFVEDVAASGGYMIACAGDEIFCDPSSILGSIGVVSGSFGLQ 130

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             ++K+G+  +   +   KA   PF   NP AV  ++ +    +  F+ LV ESRN    
Sbjct: 131 DLINKIGIERRLYTAGEHKAMLDPFLPENPDAVARLKKIQREIHALFISLVKESRNGRLK 190

Query: 203 KTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
                L  G  W G  A  +GL D +G    V ++ +   V
Sbjct: 191 SADDVLFTGEYWAGDTAVTLGLADGIGDLRAVLRARFGDKV 231


>gi|15639981|ref|NP_219434.1| protease IV (sppA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189026220|ref|YP_001933992.1| protease IV [Treponema pallidum subsp. pallidum SS14]
 gi|3323323|gb|AAC26585.1| protease IV (sppA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189018795|gb|ACD71413.1| protease IV [Treponema pallidum subsp. pallidum SS14]
          Length = 598

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 113/268 (42%), Gaps = 14/268 (5%)

Query: 35  SPHVARIAIRGQIED----------SQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
              V  I + G I            S E+   ++    D    A+++ + S GG  +A E
Sbjct: 316 QDQVGIIHLAGPIAAHRDTELGGTISDEVSALLDVAMSDPDIKAVVLRIDSGGGEVFASE 375

Query: 85  AIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            I RA+ + K   +KPVI  +  +AAS  Y ++ A++ I A+  ++ GSIGVL   P  +
Sbjct: 376 RIRRALARAKRRGKKPVIVSMGAIAASGAYWVASAADYIFASPYTITGSIGVLSVLPTFE 435

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
            FL++               +PS       +    MQ  V ++Y  F+ +VS  RN+  D
Sbjct: 436 TFLERYAGITVDSVQVHGVRQPSLLRSGTAEDTARMQLDVMATYRTFLSVVSAGRNLTLD 495

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           +   +++GRI+ G +A  +GL+D +GG +E           +              +  +
Sbjct: 496 RVAAVAEGRIYAGEDAVSLGLVDALGGLDEAVAHAAKESHCRQYS--VRVLKRSATYGEE 553

Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWAV 290
                   L + ++   ++  +  L  +
Sbjct: 554 FLQSLWDVLQKRSLAFGERVIIGELLQL 581



 Score = 62.3 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 88/265 (33%), Gaps = 18/265 (6%)

Query: 41  IAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE---AIFRAIQKVKNRK 97
           +  +G      ++ + +   + D    ++   LS+  G  +       +  A+ + K  K
Sbjct: 79  LNPKGSAILLSDITQALRNAATDRRIESVFFDLSNMSG--WTSGHFVEMESALSEYKKSK 136

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +       + A Y I+  ++ I+      V   G   +  +     +K+GV    V +
Sbjct: 137 KPLYVFSTSYSLADYYIASFADEIILDPMGSVDLSGFYTETLFYXGMEEKIGVRWNXVHA 196

Query: 158 SPMKAE--PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT- 214
              K         + +P+  +  Q V    +  ++  VS +R +        +D R+   
Sbjct: 197 GVYKGMAEIFSRKDFSPEVRRNYQSVFARLWQQYLSDVSRNRALEVQHLARYADRRLELL 256

Query: 215 -------GAEAKKVGLIDVVGGQEE---VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
                     A    L+  V   +E     + L     + +   +   +  ++     ++
Sbjct: 257 QKYNGDGARTALAEKLVTRVCSYDEAGVALKFLKEDDYESAKNFVGLDDYNRDRAQRQVQ 316

Query: 265 NLSISSLLEDTIPLMKQTKVQGLWA 289
           +      L   I   + T++ G  +
Sbjct: 317 DQVGIIHLAGPIAAHRDTELGGTIS 341


>gi|319784754|ref|YP_004144230.1| peptidase S49 [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170642|gb|ADV14180.1| peptidase S49 [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 287

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 108/266 (40%), Gaps = 14/266 (5%)

Query: 37  HVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
            +  I + G I                   IE+    D A A+ +S++SPGGS      I
Sbjct: 19  TIPVIRLHGTIMAGGGQFRPSLSLASTAGLIEKAFSYD-APAVAISINSPGGSPVQSRLI 77

Query: 87  FRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           F+ I+ +   K    +  V ++AAS GY+I+ A + I A  +S+VGSIGV+         
Sbjct: 78  FKRIRDLATEKNRKVLVFVEDVAASGGYMIAVAGDEIFADPSSIVGSIGVVSASFGFPEL 137

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           + K+G+  +   +   KA   PF     + V+ ++ +    +  F+ LV E R       
Sbjct: 138 MKKIGIERRVHTAGQNKAVLDPFKPEKKEDVERLKALQLEVHGTFIDLVKERRGSKLKDD 197

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             L  G  WTG +  ++GL+D +G    V ++ +       +         +   F    
Sbjct: 198 PDLFTGLFWTGIKGLELGLVDALGDMRTVLKTRFGAKTQLRLITAPRGFLSRFGLFGSSG 257

Query: 265 NLSISSLLEDTI-PLMKQTKVQGLWA 289
             S   +       L+   + + LW+
Sbjct: 258 GFSAPDIAAAAASGLIDAAEERALWS 283


>gi|325292019|ref|YP_004277883.1| protease SohB [Agrobacterium sp. H13-3]
 gi|325059872|gb|ADY63563.1| protease SohB [Agrobacterium sp. H13-3]
          Length = 288

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/285 (21%), Positives = 112/285 (39%), Gaps = 15/285 (5%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATAL 69
           +  + +            +  + + G I           +       +E+      A A+
Sbjct: 1   MGFLKYLVPKRFRKKELVIPVVRMHGAIMAGGNQFRPALNLASYAPLLEKAFAVKDAPAV 60

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
            +S++SPGGS      I+  I+++  +  K V+  V ++AAS GY+I+ A + I+A  TS
Sbjct: 61  AISVNSPGGSPVQARMIYNRIRQLAEEKDKKVLIFVEDVAASGGYMIALAGDEIIADPTS 120

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           +VGSIGV+         L K+GV  +   +   K    PF       ++ ++ +    ++
Sbjct: 121 IVGSIGVVSGGFGFPEMLKKIGVERRVYTAGENKVILDPFQPEKEGDIEYLKSLQVEIHN 180

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA-LGVDQSI 246
            F+ +V   R         +  G  WTG     +GLID +G   EV +  Y      Q +
Sbjct: 181 VFIDMVKMRRGAKLKGDETVFSGLFWTGMRGLDLGLIDGLGDMREVLRRRYGTKVKLQLV 240

Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
              +     K         L+   L    +  + +   +   A+W
Sbjct: 241 TGGRSLFGKKVPGVNAALGLNAERLAAGAVSGLAEVAEE--KALW 283


>gi|89070172|ref|ZP_01157500.1| peptidase, family S49 [Oceanicola granulosus HTCC2516]
 gi|89044188|gb|EAR50339.1| peptidase, family S49 [Oceanicola granulosus HTCC2516]
          Length = 263

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 108/235 (45%), Gaps = 14/235 (5%)

Query: 36  PHVARIAIRGQIE------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
           P V  + ++G I           +   +E+  R     A+ + +SSPGGS      I   
Sbjct: 12  PKVCVVQLQGPIGIGPRGLSDATVAPLLEKAFRAKP-DAVALQISSPGGSPVQSSLIGGR 70

Query: 90  IQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
           I+++  + + PV+  V ++AAS GY ++ A++ I A  +S+VGSIGV+      + F+ +
Sbjct: 71  IRRLADERKVPVVAFVEDVAASGGYWLAAAADEIYADASSVVGSIGVISAGFGAQEFIAR 130

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
            G+  +   S   K+   PF    P+ V+ ++ +++  +  FV  V+  R     +   L
Sbjct: 131 HGIERRIHTSGRSKSFLDPFRPEKPEDVERLERLLEEIHEHFVAHVTSRRGAKLAEGADL 190

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             G  WTGA AK++GL+D +G        +          K + +   ++ +   
Sbjct: 191 FTGEFWTGARAKELGLVDGIGHL---VPEMKRRFG--PKTKFRKFGQKRSLFQRL 240


>gi|309780992|ref|ZP_07675731.1| prophage LambdaMc01, peptidase, U7 family [Ralstonia sp. 5_7_47FAA]
 gi|330824611|ref|YP_004387914.1| peptidase S49 [Alicycliphilus denitrificans K601]
 gi|308920295|gb|EFP65953.1| prophage LambdaMc01, peptidase, U7 family [Ralstonia sp. 5_7_47FAA]
 gi|329309983|gb|AEB84398.1| peptidase S49 [Alicycliphilus denitrificans K601]
          Length = 413

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 102/252 (40%), Gaps = 15/252 (5%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE------------ 48
           ++ +L  +  R + L+ +  +V Y   +      S  VA I I G +             
Sbjct: 23  LDIILSVLGAR-IGLADLAASVGYTPAARAPGPPSGKVAVIPIHGTLVRRTSGLEAESGL 81

Query: 49  -DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
                +  +++         A+++ + SPGG +     +   I+     KPV    ++MA
Sbjct: 82  ASYTGIAAQLDAALTSPEVAAILLDIDSPGGESGGVFDLADRIRVASQVKPVWAVANDMA 141

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
            SA Y ++ A+  +  A T  VGSIGV+  +        K GV   +V +   K + +P 
Sbjct: 142 FSAAYALASAATRVFVARTGGVGSIGVIAMHIDQSVKDAKDGVRYTAVFAGERKNDLNPH 201

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
             ++  A  +++  VD  Y  FV  V+  R +  D       G  + G +A   GL D V
Sbjct: 202 EPLSDAAHAVLKAEVDRVYELFVETVARHRGLDADAVRATEAGLFF-GPDAVATGLADAV 260

Query: 228 GGQEEVWQSLYA 239
           G  ++    L  
Sbjct: 261 GSLDDALTQLTQ 272


>gi|85714241|ref|ZP_01045229.1| peptidase S49 [Nitrobacter sp. Nb-311A]
 gi|85698688|gb|EAQ36557.1| peptidase S49 [Nitrobacter sp. Nb-311A]
          Length = 306

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/265 (24%), Positives = 109/265 (41%), Gaps = 18/265 (6%)

Query: 38  VARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           V  + + G I     L          + +ER    D+A A+ + ++SPGGS      I+ 
Sbjct: 37  VPVVRLSGVIGAVTPLRPGMMLAGVAKTLERAFAVDNAKAVALVVNSPGGSPVQSRQIYL 96

Query: 89  AIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
            I+++   K  PV+  V ++AAS GY+I+CA + I    +S++GSIGV+         + 
Sbjct: 97  RIRQLSREKEIPVLVFVEDVAASGGYMIACAGDEIFCDPSSIMGSIGVVGGSFGFTELMR 156

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           K+GV  +   +   KA   PF   NP  V  ++ +    +  F+ LV  SR      T  
Sbjct: 157 KIGVERRLYTAGEHKATLDPFLPENPDDVARLKAIQREIHATFIELVKASRGERLKGTDD 216

Query: 207 -LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L  G  W G  +  +GL D +G      ++ +   V   +        P       L  
Sbjct: 217 LLFTGEYWAGERSVALGLADAIGDLRSTLRARFGEKVATPVIA------PSTGLLSGLLG 270

Query: 266 LSISSLLEDTIPLMKQTKVQGLWAV 290
               +    ++  M     + + A+
Sbjct: 271 RKAGAGTLTSLDGMAAMPDELISAL 295


>gi|320664993|gb|EFX32107.1| peptidase S49 [Escherichia coli O157:H7 str. LSU-61]
          Length = 439

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 106/259 (40%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I  +++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIALLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SA  L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSACQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 318 VSATASQADVTDVVPATEG 336


>gi|320643596|gb|EFX12745.1| peptidase S49 [Escherichia coli O157:H- str. 493-89]
 gi|320648937|gb|EFX17541.1| peptidase S49 [Escherichia coli O157:H- str. H 2687]
          Length = 439

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 106/259 (40%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I  +++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIALLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SA  L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSACQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 318 VSATASQADVTDVVPATEG 336


>gi|331651533|ref|ZP_08352553.1| minor capsid protein C (GPC) [Escherichia coli M718]
 gi|331050806|gb|EGI22863.1| minor capsid protein C (GPC) [Escherichia coli M718]
          Length = 484

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 125 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 184

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 185 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 244

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 245 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 304

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 305 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 362

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 363 VSATASQADVTDVVPATEG 381


>gi|323942023|gb|EGB38201.1| peptidase S49 [Escherichia coli E482]
          Length = 362

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 67  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 246

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 304

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 305 VSATASQADVTDVVPATEG 323


>gi|323185917|gb|EFZ71274.1| minor capsid protein C [Escherichia coli 1357]
          Length = 419

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 60  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 119

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 120 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 179

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 180 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 239

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 240 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 297

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 298 VSATASQADVTDVVPATEG 316


>gi|315252463|gb|EFU32431.1| putative signal peptide peptidase SppA [Escherichia coli MS 85-1]
          Length = 426

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 67  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 246

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 304

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 305 VSATASQADVTDVVPATEG 323


>gi|307310890|ref|ZP_07590536.1| peptidase S49 [Escherichia coli W]
 gi|306909068|gb|EFN39564.1| peptidase S49 [Escherichia coli W]
 gi|315060844|gb|ADT75171.1| peptidase S49 [Escherichia coli W]
 gi|323378587|gb|ADX50855.1| peptidase S49 [Escherichia coli KO11]
          Length = 439

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 318 VSATASQADVTDVVPATEG 336


>gi|293413827|ref|ZP_06656476.1| capsid protein [Escherichia coli B185]
 gi|291433885|gb|EFF06858.1| capsid protein [Escherichia coli B185]
          Length = 439

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 318 VSATASQADVTDVVPATEG 336


>gi|218699885|ref|YP_002407514.1| minor capsid protein C from bacteriophage origin [Escherichia coli
           IAI39]
 gi|218369871|emb|CAR17645.1| Minor capsid protein C from bacteriophage origin [Escherichia coli
           IAI39]
          Length = 488

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 125 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 184

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 185 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 244

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 245 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 304

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 305 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 362

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 363 VSATASQADVTDVVPATEG 381


>gi|26249012|ref|NP_755052.1| putative capsid protein of prophage [Escherichia coli CFT073]
 gi|26109419|gb|AAN81622.1|AE016765_24 Putative capsid protein of prophage [Escherichia coli CFT073]
          Length = 477

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 118 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 177

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 178 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 237

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 238 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 297

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 298 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 355

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 356 VSATASQADVTDVVPATEG 374


>gi|193067665|ref|ZP_03048632.1| minor capsid protein C [Escherichia coli E110019]
 gi|192959077|gb|EDV89513.1| minor capsid protein C [Escherichia coli E110019]
          Length = 439

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 318 VSATASQADVTDVVPATEG 336


>gi|309701424|emb|CBJ00728.1| Minor capsid protein [Escherichia coli ETEC H10407]
          Length = 439

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I ++++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARMRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 318 VSATASQTDVTDVVPATEG 336


>gi|331682243|ref|ZP_08382862.1| minor capsid protein C (GPC) [Escherichia coli H299]
 gi|331079874|gb|EGI51053.1| minor capsid protein C (GPC) [Escherichia coli H299]
          Length = 439

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQYRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 318 VSATASQADVTDVVPATEG 336


>gi|111225578|ref|YP_716372.1| endopeptidase IV [Frankia alni ACN14a]
 gi|111153110|emb|CAJ64857.1| Endopeptidase IV (Protease IV, signal peptide peptidase) [Frankia
           alni ACN14a]
          Length = 772

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 2/210 (0%)

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNI 120
           RD+   A +  ++SPGGS  A + + R  ++ +      +  + ++AAS GY +S A+++
Sbjct: 459 RDEDVAAAVFRVNSPGGSYVASDLVRREAERFRASGRPLVVSMGDVAASGGYFVSLAADL 518

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           IVA   +L GSIGV      V+  LDK+GV   +V         SP         + +++
Sbjct: 519 IVANPGTLTGSIGVFAGKQVVRELLDKVGVGFGAVAEGEHALMMSPRRPFTVGEREKLEE 578

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
            +D  Y  FV  V+ +R +  D+   L+ GR+WTGA+A   GL+D +GG  +  +  +  
Sbjct: 579 FLDRVYADFVDKVAAARRLTRDQVHELARGRVWTGADAHAYGLVDELGGLTDALRLAWTR 638

Query: 241 GVDQS-IRKIKDWNPPKNYWFCDLKNLSIS 269
                         P  +         S  
Sbjct: 639 AGLPEGETPRVRLAPRPSVLERVRTPKSSE 668



 Score = 78.5 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 84/190 (44%), Gaps = 7/190 (3%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           ++L+E +   + D   + ++  + + G      + I  AI   +          +     
Sbjct: 54  RDLVEALRYATEDPRVSVVVAHIGAAGTPLARIQEIRAAIGDFRAAGGTAIAYADTFGEF 113

Query: 111 -----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
                 Y ++CA + I  A +   G  G+  + P+++  LD+LGV+++  +    K   +
Sbjct: 114 GGGTGPYYLACAFDEIWLAPSGDCGLTGLGMETPFLRGALDRLGVAVEIGQRYEYKNAVN 173

Query: 166 P--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
                +  P  ++ +  +++SS    V  +++ R +P D+   L D     G+ A  VGL
Sbjct: 174 TLVERDFTPAHLEAVSRIIESSSEQVVAGIAQGRRMPADRVRRLIDLGPLAGSVALDVGL 233

Query: 224 IDVVGGQEEV 233
           +D +G ++EV
Sbjct: 234 VDRLGYRDEV 243


>gi|254438067|ref|ZP_05051561.1| peptidase, S49 (protease IV) family [Octadecabacter antarcticus
           307]
 gi|198253513|gb|EDY77827.1| peptidase, S49 (protease IV) family [Octadecabacter antarcticus
           307]
          Length = 262

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 20/259 (7%)

Query: 33  DNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
            + PHVA I ++G I  S      + L + IE+  R     A+ + +SSPGGS      I
Sbjct: 9   KSDPHVAVIRLQGTIASSGRSLNDRGLTDSIEKAFRSKP-KAVALEISSPGGSPVQSSLI 67

Query: 87  FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
              I+++ + K  PV + V ++AAS GY ++ A + I     S+VGSIGV+     +   
Sbjct: 68  CARIRRLADEKDIPVYSFVEDVAASGGYWLATAGDEIYVDRGSIVGSIGVITAGFGLTGT 127

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           LDK+G   +   +   K+   PF    P  V+ ++ ++D  + +F   VS  R       
Sbjct: 128 LDKIGAERRVYTAGKSKSMLDPFQAEKPADVKRLKGLLDDLHVFFKDHVSTRRAGKIVD- 186

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             L  G IW G ++  VGL D +G      +  +         K + +   K +      
Sbjct: 187 QDLFTGDIWVGQKSIDVGLADHLGHLVPTMKDRFG-----DKTKFRRFGQKKPFLSRF-- 239

Query: 265 NLSISSLLEDTIPLMKQTK 283
               + +++D +  +++  
Sbjct: 240 ---GAQIIDDAVGGIEERA 255


>gi|120610301|ref|YP_969979.1| serine peptidase [Acidovorax citrulli AAC00-1]
 gi|120588765|gb|ABM32205.1| protein C [Acidovorax citrulli AAC00-1]
          Length = 316

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 14/214 (6%)

Query: 38  VARIAIRG-------------QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           VA I + G              +   + L   I     D +   + + + SPGGS     
Sbjct: 76  VAVIPVHGVLVPRTANLEMCETMTSYEGLRRDIRAAINDPTIERIALDIDSPGGSVAGAF 135

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +   I+ +  +KP+   V+ M  S GYLI+ A + IV + TS VGSIGV+  +      
Sbjct: 136 ELATDIRAMSAQKPITGVVNFMGYSGGYLIASACSEIVVSRTSGVGSIGVIASHMDRAAL 195

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
            +KLGV + +V +   K + +P   ++ ++++++ D+V+  Y  FV  V+E R +     
Sbjct: 196 NEKLGVKVTTVFAGAHKNDLTPHEPISEQSLRVLTDLVNEGYEMFVSAVAEYRGMTAAAV 255

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                G  + G  A K GL D +   ++    + 
Sbjct: 256 RATEAGL-YRGDAAIKAGLADRLQSPQDAIDGIA 288


>gi|312969556|ref|ZP_07783739.1| minor capsid C [Escherichia coli 1827-70]
 gi|310337841|gb|EFQ02930.1| minor capsid C [Escherichia coli 1827-70]
          Length = 439

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 318 VSATASQTDVTDVVPATEG 336


>gi|325497825|gb|EGC95684.1| capsid protein [Escherichia fergusonii ECD227]
          Length = 439

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRE-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +   + 
Sbjct: 318 VSATASQADVTDVVSATEG 336


>gi|323947947|gb|EGB43942.1| peptidase S49 [Escherichia coli H120]
          Length = 354

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 67  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 246

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 304

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 305 VSATASQADVTDVVPATEG 323


>gi|315252353|gb|EFU32321.1| putative signal peptide peptidase SppA [Escherichia coli MS 85-1]
          Length = 426

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 67  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 246

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 304

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 305 VSATASQADVTDVVPATEG 323


>gi|301307482|ref|ZP_07213470.1| putative signal peptide peptidase SppA [Escherichia coli MS 124-1]
 gi|300837352|gb|EFK65112.1| putative signal peptide peptidase SppA [Escherichia coli MS 124-1]
          Length = 445

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 86  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 145

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 146 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 205

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 206 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 265

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 266 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 323

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 324 VSATASQADVTDVVPATEG 342


>gi|300917751|ref|ZP_07134397.1| putative signal peptide peptidase SppA [Escherichia coli MS 115-1]
 gi|300415028|gb|EFJ98338.1| putative signal peptide peptidase SppA [Escherichia coli MS 115-1]
          Length = 426

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 67  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 246

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 304

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 305 VSATASQADVTDVVPATEG 323


>gi|294490182|gb|ADE88938.1| minor capsid protein C (GPC) [Escherichia coli IHE3034]
          Length = 439

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 318 VSATASQADVTDVVPATEG 336


>gi|218554104|ref|YP_002387017.1| Minor capsid protein C from bacteriophage origin [Escherichia coli
           IAI1]
 gi|218360872|emb|CAQ98442.2| Minor capsid protein C from bacteriophage origin [Escherichia coli
           IAI1]
          Length = 484

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 125 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 184

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 185 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 244

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 245 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 304

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 305 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 362

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 363 VSATASQADVTDVVPATEG 381


>gi|218553334|ref|YP_002386247.1| Minor capsid protein [Escherichia coli IAI1]
 gi|218360102|emb|CAQ97650.1| Minor capsid protein [Contains: Capsid assembly protein NU3] from
           bacteriophage origin [Escherichia coli IAI1]
 gi|323169838|gb|EFZ55494.1| minor capsid protein C [Escherichia coli LT-68]
          Length = 439

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 318 VSATASQADVTDVVPATEG 336


>gi|170769088|ref|ZP_02903541.1| minor capsid protein C (GPC) [Escherichia albertii TW07627]
 gi|170122160|gb|EDS91091.1| minor capsid protein C (GPC) [Escherichia albertii TW07627]
          Length = 439

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 318 VSATASQADVTDVVPATEG 336


>gi|193063327|ref|ZP_03044417.1| minor capsid protein C [Escherichia coli E22]
 gi|192930911|gb|EDV83515.1| minor capsid protein C [Escherichia coli E22]
          Length = 439

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 318 VSATASQADVTDVVPATEG 336


>gi|191166606|ref|ZP_03028435.1| minor capsid protein C [Escherichia coli B7A]
 gi|194427933|ref|ZP_03060478.1| minor capsid protein C [Escherichia coli B171]
 gi|260842764|ref|YP_003220542.1| putative head protein/prohead protease [Escherichia coli O103:H2
           str. 12009]
 gi|190903411|gb|EDV63131.1| minor capsid protein C [Escherichia coli B7A]
 gi|194413908|gb|EDX30185.1| minor capsid protein C [Escherichia coli B171]
 gi|257757911|dbj|BAI29408.1| putative head protein/prohead protease [Escherichia coli O103:H2
           str. 12009]
          Length = 439

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 318 VSATASQADVTDVVPATEG 336


>gi|320198084|gb|EFW72692.1| Head-tail preconnector protein GP5 [Escherichia coli EC4100B]
          Length = 439

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVCRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITIMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + +   +P M+ 
Sbjct: 318 VSATASQADVTGVVPAMEG 336


>gi|332343254|gb|AEE56588.1| minor capsid protein [Escherichia coli UMNK88]
          Length = 439

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSTYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 318 VSATASQADVTDVVPATEG 336


>gi|324014985|gb|EGB84204.1| putative signal peptide peptidase SppA [Escherichia coli MS 60-1]
          Length = 426

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 67  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRIFAQKVSAYTGLSVQ 246

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 304

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 305 VSATASQADVTDVVPATEG 323


>gi|110641352|ref|YP_669082.1| minor capsid protein C [Escherichia coli 536]
 gi|191173120|ref|ZP_03034653.1| minor capsid protein C [Escherichia coli F11]
 gi|110342944|gb|ABG69181.1| minor capsid protein C [Escherichia coli 536]
 gi|190906665|gb|EDV66271.1| minor capsid protein C [Escherichia coli F11]
          Length = 439

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRIFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 318 VSATASQADVTDVVPATEG 336


>gi|324116806|gb|EGC10720.1| peptidase S49 [Escherichia coli E1167]
          Length = 439

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIITRVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 VALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 318 VSATASQADVTDVVPATEG 336


>gi|148259074|ref|YP_001233201.1| acid phosphatase [Acidiphilium cryptum JF-5]
 gi|326402225|ref|YP_004282306.1| putative peptidase S49 [Acidiphilium multivorum AIU301]
 gi|146400755|gb|ABQ29282.1| Acid phosphatase [Acidiphilium cryptum JF-5]
 gi|325049086|dbj|BAJ79424.1| putative peptidase S49 [Acidiphilium multivorum AIU301]
          Length = 580

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 103/247 (41%), Gaps = 8/247 (3%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEM 106
            D   L   I     D S  A+++ L +PGG+      +   + +     KP+I  +  +
Sbjct: 324 IDPARLAHEIATAVADPSIRAIVLRLDTPGGTVTGSAMVGAEVARAARLHKPLIVSMGAL 383

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            AS GY IS    ++VA   +L GSIGVL         L +LGVS+ +          S 
Sbjct: 384 DASGGYWISSHGAVLVADPATLTGSIGVLGGKFSFGGLLARLGVSVSTASRGANALFDSA 443

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
            +      +  +Q  +D  Y  FV  V+  R +   +   +  GR+WTGA+A+  GL+D 
Sbjct: 444 VTPWTEAQLASLQGQLDLDYQKFVGWVAAGRRMSPAQVNAVGQGRVWTGAQARSRGLVDR 503

Query: 227 VGGQEEV---WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
           +GG  E     ++   L  D ++  +     P             + L    +P      
Sbjct: 504 LGGYHEAFMTVRAALHLPADAALDIVPGNEQPGLAALLATLARQANPLEAAALP----EP 559

Query: 284 VQGLWAV 290
           ++GL+A+
Sbjct: 560 LRGLFAL 566



 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 7/215 (3%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79
             +     ++  +  +P        G     ++ I  I+R + D     + + L      
Sbjct: 55  FILSLNLQTAPPDVAAPSALLRRATGATPTLEQTIAAIDRAATDPRVRGIDILLGGGCCG 114

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEM-----AASAGYLISCASNIIVAAETSLVGSIGV 134
               E +  A+ + +           M          Y+++ A+N I  ++    G  G+
Sbjct: 115 LTTAEELHDALARFRAISHRQVVARAMSFDGAEGLGAYIVATAANRIELSDAGDFGVTGL 174

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRL 192
             Q P+    L   GV  +       K  P  F+    +  A +MM  +  S Y   +  
Sbjct: 175 ALQSPFAADLLKMAGVEAQFEHIGKYKTYPELFTRSGPSAAATEMMNSLAGSLYDSALVP 234

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
           ++       D+   L D   ++ A+AK+ GL+D V
Sbjct: 235 IAARLKRSPDQVKALFDQAPFSAAQAKQDGLVDTV 269


>gi|83941426|ref|ZP_00953888.1| peptidase, family protein S49 [Sulfitobacter sp. EE-36]
 gi|83847246|gb|EAP85121.1| peptidase, family protein S49 [Sulfitobacter sp. EE-36]
          Length = 250

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 104/252 (41%), Gaps = 19/252 (7%)

Query: 41  IAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
           + + G I            +   I++        A+++ +SSPGGS      I   I+++
Sbjct: 2   VRLSGVIGGRTRGGLNDSGIGPAIDKAFNRGKPAAVVLEISSPGGSPVQSSLIGARIRRL 61

Query: 94  KNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
              K +  I  V ++AAS GY ++ A++ I A  +S++GSIGV+        F+ + GV 
Sbjct: 62  AEEKNIPVIAFVEDVAASGGYWLAAAADEIYADPSSVLGSIGVISASFGADEFIQRHGVE 121

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
            +   +   K+   PF    P+ V  ++ +++  +  F+  V+  R         L  G 
Sbjct: 122 RRVYTAGQSKSMLDPFRPEKPEDVARLKQLLEDIHGNFIDHVTSRRGSKLSSDSDLFTGE 181

Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           +W    A ++GLID +G    + +  +         K   +   K            + +
Sbjct: 182 VWLAKRATELGLIDGIGHLRPMIKQRFG-----DKVKFNRYGTKKGLLSRF-----GAQI 231

Query: 272 LEDTIPLMKQTK 283
           + D +  +++  
Sbjct: 232 IGDAVDSIEERA 243


>gi|257386269|ref|YP_003176042.1| peptidase S49 [Halomicrobium mukohataei DSM 12286]
 gi|257168576|gb|ACV46335.1| peptidase S49 [Halomicrobium mukohataei DSM 12286]
          Length = 307

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 124/304 (40%), Gaps = 30/304 (9%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVY-----FSWSSHVEDNSPHVARIAIRGQIED--SQEL 53
           ++  +K + T Y ++ +V L +        S +    D+   +A + I+G I    + E+
Sbjct: 5   IDNYVKTLLTSYTVIIVVALLIGAAVGPAVSSALFQSDDEGTIAAVTIQGPISGPTADEV 64

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
             ++  +  DDS  A+++ + S GGS  A EA +RA++++   KPV+T V  +AAS  Y 
Sbjct: 65  TRQLRTLRTDDSIDAVVLRIDSGGGSVAASEAQYRAVKRLAREKPVVTSVRGVAASGAYY 124

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
            +  S+ I A    LVGS+GV    P             +SV + P KA      ++   
Sbjct: 125 TALPSDEIYATPGGLVGSVGVRALIPQP-------DGVPRSVTTGPDKAGGLTGDDI--- 174

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEE 232
                +  V++    FV  V   R      +   L++ ++++GA A   GL D +GG E 
Sbjct: 175 -----RGQVETLKRSFVDSVYAERGDRLSLSRTELTNAKVYSGAAAVDNGLADEIGGLET 229

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL----- 287
              +        S   +  +          L     +S     +        +G+     
Sbjct: 230 AIAAAAEKAGLDSYDVV--YRSTTPGVLSLLLGSDANSTDAGQVDRASLLTTRGIERPQY 287

Query: 288 WAVW 291
             +W
Sbjct: 288 LMLW 291


>gi|260460358|ref|ZP_05808610.1| peptidase S49 [Mesorhizobium opportunistum WSM2075]
 gi|259034003|gb|EEW35262.1| peptidase S49 [Mesorhizobium opportunistum WSM2075]
          Length = 287

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 61/266 (22%), Positives = 110/266 (41%), Gaps = 14/266 (5%)

Query: 37  HVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
            +  I + G I                   IE+    + A A+ +S++SPGGS      I
Sbjct: 19  TIPVIRLHGTIMAGGGPFRPSLSLASTAGLIEKAFSFE-APAVAISINSPGGSPVQSRLI 77

Query: 87  FRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           F+ I+ +  +  K V+  V ++AAS GY+I+ A + I A  +S+VGSIGV+         
Sbjct: 78  FKRIRDLATEKNKKVLVFVEDVAASGGYMIAVAGDEIFADPSSIVGSIGVVSASFGFPEL 137

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           + K+GV  +   +   KA   PF     + V+ ++ +    +  F+ LV E R       
Sbjct: 138 MKKIGVERRVHTAGQNKAVLDPFKPEKKEDVERLKALQLEVHETFIDLVKERRGTKLKDD 197

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA-LGVDQSIRKIKDWNPPKNYWFCDL 263
             L  G  WTG +  ++GL+D +     V ++ +      + I   + +      +    
Sbjct: 198 PDLFTGLFWTGKKGLELGLVDALSDMRTVLKTRFGAKTQLRLITAPRGFLGRFGLFGSSQ 257

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289
              +          ++   + + LWA
Sbjct: 258 GFSAPDIAAAAASGVIDAAEERALWA 283


>gi|9626248|ref|NP_040584.1| capsid component [Enterobacteria phage lambda]
 gi|238903122|ref|YP_002928918.1| Minor capsid protein C (GPC) [Escherichia coli BW2952]
 gi|253774242|ref|YP_003037073.1| peptidase S49 [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|137565|sp|P03711|VCAC_LAMBD RecName: Full=Minor capsid protein C; AltName: Full=Putative
           peptidase GPC; Short=GPC; Contains: RecName: Full=Capsid
           assembly protein NU3
 gi|215109|gb|AAA96537.1| C (capsid component;439) [Enterobacteria phage lambda]
 gi|194021578|gb|ACF32387.1| capsid component [Enterobacteria phage DE3]
 gi|238861774|gb|ACR63772.1| Minor capsid protein C (GPC) [Escherichia coli BW2952]
 gi|242376543|emb|CAQ31251.1| enterobacteria phage lambda, capsid component [Escherichia coli
           BL21(DE3)]
 gi|253325286|gb|ACT29888.1| peptidase S49 [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253976951|gb|ACT42621.1| capsid component [Escherichia coli BL21(DE3)]
          Length = 439

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 VVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 318 VSATASQADVTDVVPATEG 336


>gi|157157447|ref|YP_001463293.1| S49 family peptidase [Escherichia coli E24377A]
 gi|209919414|ref|YP_002293498.1| putative phage minor capsid protein [Escherichia coli SE11]
 gi|157079477|gb|ABV19185.1| peptidase, S49 (protease IV) family [Escherichia coli E24377A]
 gi|209912673|dbj|BAG77747.1| putative phage minor capsid protein [Escherichia coli SE11]
          Length = 436

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 97/223 (43%), Gaps = 14/223 (6%)

Query: 38  VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           +A + + G              +     + +R+++   D     +++ + SPGG      
Sbjct: 79  IAVLPVTGTLVHKLGYINPVSGMSGYDGIAKRLQQAISDPDVKGILLDIDSPGGEVAGAF 138

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
                I + + +KPV     + A SA YL++ A +  +  +T  VGSIGVL  +  V+  
Sbjct: 139 DTADLIARAREQKPVWALASDTACSAAYLLASACSRRLITQTGTVGSIGVLMAHRCVEKA 198

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L+  GV +  + +   K + +P+S++        Q  ++S+   F + VS+   +   + 
Sbjct: 199 LEIAGVDVTLIYAGAHKVDGNPYSQLPDDVRDEFQLSINSTREQFAQKVSDYTGLKKSRV 258

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           L  ++  ++ GA+A K GL D +    +    +      ++ R
Sbjct: 259 LA-TEAAVFIGADAIKSGLADQLVNYADAIAVMADALKPKTER 300


>gi|320197690|gb|EFW72301.1| Head-tail preconnector protein GP5 [Escherichia coli WV_060327]
          Length = 439

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIISRLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  + +  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQIARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 318 VSATASQADVTDVVPATEG 336


>gi|315607923|ref|ZP_07882916.1| signal peptide peptidase SppA [Prevotella buccae ATCC 33574]
 gi|315250392|gb|EFU30388.1| signal peptide peptidase SppA [Prevotella buccae ATCC 33574]
          Length = 596

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 93/260 (35%), Gaps = 23/260 (8%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELI---------------- 54
           ++L  ++L  +  S +   + +   V  I ++G I +   ++ I                
Sbjct: 23  LILGFISLIGIMVSGNGTTKIDDNSVLVINLQGDISEKAEEDFIGRLTGNRINQLGLNEL 82

Query: 55  -ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
            + I++   +D    + +            + +   +   K     I    +      Y 
Sbjct: 83  KDAIKKAQDNDKIKGIYLQAGVLQSDYATLQELRNTLADFKKSGKWIIAYGDSYTQGAYY 142

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VN 171
           ++  +N +      ++   G+  +  + K   DK+G+  +  K    K+    ++E  ++
Sbjct: 143 LTSIANKLYLNPEGMLDWHGIAARIQFNKGLYDKVGLKYQVFKVGKFKSYTERYTEEQMS 202

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAK--KVGLIDVVGG 229
               + ++  ++  +   V  VS+SRNI   K   L+D  ++           ++D +  
Sbjct: 203 EPNHEQVKRYINGLWDIMVADVSKSRNIAPTKLRQLADSTLFLNDNKMLVSNKIVDGLLY 262

Query: 230 QEEVWQSLYALGVDQSIRKI 249
            +++  ++      +    I
Sbjct: 263 YDQLKAAMKKQLGIEEDEDI 282



 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 62/265 (23%), Positives = 110/265 (41%), Gaps = 22/265 (8%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRD------------DS 65
           +TV     +S  +     +A     G I    S+ L    + I  D            D 
Sbjct: 285 VTVGDVIEASEEDSQGDAIAVYYCEGSIVRMPSESLFGGEKEIVSDVVCSDLADLADDDD 344

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
             A+++ ++S GG AYA E ++R ++ +  +KPV+  +  MAAS  Y +S  +  +VA  
Sbjct: 345 VKAVVLRINSGGGDAYASEQLWRQVKLLNAKKPVVVSMSGMAASGAYYMSMGARWLVAQP 404

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM------- 178
           T+L GSIG+    P      ++        + +   A  S    + P A           
Sbjct: 405 TTLTGSIGIFACLPDFSELYNQKLGIRFDEEKTNEMATFSYPIGMVPMARHFNATEATAI 464

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           Q+ V+  Y  F + V+E R +   +   ++ GR+W G +A  + L+D +GG EE      
Sbjct: 465 QNYVNRGYVLFRQRVAEGRKMKTAQVEDVAQGRVWLGTDALHLKLVDQLGGLEEAMTKAA 524

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDL 263
            L   +     +++    ++    L
Sbjct: 525 QLAKLKK-YHAEEYPLVGSFLEQLL 548


>gi|86356525|ref|YP_468417.1| protease protein [Rhizobium etli CFN 42]
 gi|86280627|gb|ABC89690.1| protease protein [Rhizobium etli CFN 42]
          Length = 286

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 60/269 (22%), Positives = 116/269 (43%), Gaps = 21/269 (7%)

Query: 37  HVARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
            +  + ++G I               +   +E+      A A+ +S++SPGGS      I
Sbjct: 19  TIPVVRLQGAIISGGGQFRPTLNLANVAPVLEKAFAMKEAPAVAISINSPGGSPVQSRLI 78

Query: 87  FRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           F  I+++  + +K V+  V ++AAS GY+I+ A + I+A  TS+VGSIGV+         
Sbjct: 79  FTRIRELAREKQKKVLVFVEDVAASGGYMIALAGDEIIADATSIVGSIGVVSGGFGFPEL 138

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K+GV  +   +   K    PF     K ++ ++ +    +  F+ +V E R       
Sbjct: 139 LKKIGVERRVYTAGENKVILDPFQPEKEKDIEYLKSLQLEIHQVFIAMVRERRAGKLTDD 198

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             +  G  W+G    ++GLID +G   +  +  Y         +++     +  +   + 
Sbjct: 199 ATVFSGLFWSGTRGLELGLIDGLGDMRQELKRRYGQK-----TRLELVTAGRGLFGRRIP 253

Query: 265 NLSISSLLED----TIPLMKQTKVQGLWA 289
            +S  +L          L++  + + LW+
Sbjct: 254 GISPVTLEGAGSGLATGLVEAAEERALWS 282


>gi|15618523|ref|NP_224809.1| protease [Chlamydophila pneumoniae CWL029]
 gi|15836145|ref|NP_300669.1| protease [Chlamydophila pneumoniae J138]
 gi|16752427|ref|NP_444686.1| protease IV, putative [Chlamydophila pneumoniae AR39]
 gi|4376909|gb|AAD18752.1| Protease [Chlamydophila pneumoniae CWL029]
 gi|7189070|gb|AAF38017.1| protease IV, putative [Chlamydophila pneumoniae AR39]
 gi|8978985|dbj|BAA98820.1| protease [Chlamydophila pneumoniae J138]
          Length = 333

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 138/304 (45%), Gaps = 36/304 (11%)

Query: 3   FVLKKIKTRY-----VMLSLVTLTVVYFSWSSHVE-----------------DNSPHVAR 40
           FV K   +       V+L+ V +  +  S   + +                   +P +A 
Sbjct: 7   FVSKAFLSIVGLCCGVVLAFVVIFALIASSLGNGDATFVSLPDAQGEVKDLGKTAPIIAV 66

Query: 41  IAIRGQIEDS-------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
           I ++  I  S       Q ++E  E+    D    +++ +  PGG  +  + I+  ++  
Sbjct: 67  IEMKDVIASSKNTAKTIQNILEGFEKAPLKDRVKGIVIDMDCPGGEVFEIDRIYSMLRFW 126

Query: 94  KNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYPYVKPFLDKLGV 150
           K RK  P+   V+ + AS GY +SCA+  I A  +SL+GSIGV    +  VK  L++ GV
Sbjct: 127 KERKGFPIYIYVNGLCASGGYYVSCAATKIYATSSSLIGSIGVRSGPFFNVKEGLNRYGV 186

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN-IPYDKTLVLSD 209
               + +   KA  +P++       +  Q  +D  Y  FV +V+++R  +  +K +    
Sbjct: 187 ESDLLTAGKDKAPMNPYTPWTSHDREERQATLDFLYGQFVDIVTQNRPLLTKEKLVHTLG 246

Query: 210 GRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
            RI++  +AK+ G IDVVG  +E+V Q + A+   +   ++       + W+  + + + 
Sbjct: 247 ARIFSPEKAKQEGYIDVVGATKEQVLQDIVAVCKIEDNYRVI--GSGGDGWWKRVASAAA 304

Query: 269 SSLL 272
           SS L
Sbjct: 305 SSPL 308


>gi|254456509|ref|ZP_05069938.1| Clp protease [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083511|gb|EDZ60937.1| Clp protease [Candidatus Pelagibacter sp. HTCC7211]
          Length = 268

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 129/272 (47%), Gaps = 25/272 (9%)

Query: 33  DNSPHVARIAIRGQIEDSQELI---------ERIERISRDDSATALIVSLSSPGGSAYAG 83
                VA + + G I ++ +           E I++      A  + ++++SPGGS    
Sbjct: 6   KKKKIVAHLKLNGVIGNAGKFKQGIDFAGQEEVIKKAFSLKKAHTVAITINSPGGSPVQS 65

Query: 84  EAIFRAIQK--VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
             I+  I++   KN+K VI    ++AAS GYLISCA + I A  +S++GSIGV++     
Sbjct: 66  HLIYSFIRQEAKKNKKKVIVFAEDVAASGGYLISCAGDEIYANSSSIIGSIGVIYSSFGF 125

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              + K+GV  +   +   K+   PF E   + ++ ++ +    +  F+ +V +SR +  
Sbjct: 126 TELIKKIGVERRVHTAGKNKSTLDPFLEEKNEDIERLKKIQIDLHKDFIDVVEKSRGLKL 185

Query: 202 DKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
           DK+ + L  G  W+G++AK +GLID +G   EV +  +          IK +   K +  
Sbjct: 186 DKSGVELFSGEFWSGSKAKDLGLIDGIGNAHEVLKEKFG-----DDVIIKKFEKTKGWLS 240

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
             L   S ++ ++    ++ +       ++W 
Sbjct: 241 QKL--SSSNNQVDQLANILDER------SIWQ 264


>gi|33241968|ref|NP_876909.1| proteinase IV [Chlamydophila pneumoniae TW-183]
 gi|33236478|gb|AAP98566.1| proteinase IV [Chlamydophila pneumoniae TW-183]
          Length = 330

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 138/304 (45%), Gaps = 36/304 (11%)

Query: 3   FVLKKIKTRY-----VMLSLVTLTVVYFSWSSHVE-----------------DNSPHVAR 40
           FV K   +       V+L+ V +  +  S   + +                   +P +A 
Sbjct: 4   FVSKAFLSIVGLCCGVVLAFVVIFALIASSLGNGDATFVSLPDAQGEVKDLGKTAPIIAV 63

Query: 41  IAIRGQIEDS-------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
           I ++  I  S       Q ++E  E+    D    +++ +  PGG  +  + I+  ++  
Sbjct: 64  IEMKDVIASSKNTAKTIQNILEGFEKAPLKDRVKGIVIDMDCPGGEVFEIDRIYSMLRFW 123

Query: 94  KNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYPYVKPFLDKLGV 150
           K RK  P+   V+ + AS GY +SCA+  I A  +SL+GSIGV    +  VK  L++ GV
Sbjct: 124 KERKGFPIYIYVNGLCASGGYYVSCAATKIYATSSSLIGSIGVRSGPFFNVKEGLNRYGV 183

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN-IPYDKTLVLSD 209
               + +   KA  +P++       +  Q  +D  Y  FV +V+++R  +  +K +    
Sbjct: 184 ESDLLTAGKDKAPMNPYTPWTSHDREERQATLDFLYGQFVDIVTQNRPLLTKEKLVHTLG 243

Query: 210 GRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
            RI++  +AK+ G IDVVG  +E+V Q + A+   +   ++       + W+  + + + 
Sbjct: 244 ARIFSPEKAKQEGYIDVVGATKEQVLQDIVAVCKIEDNYRVI--GSGGDGWWKRVASAAA 301

Query: 269 SSLL 272
           SS L
Sbjct: 302 SSPL 305


>gi|186471872|ref|YP_001863190.1| peptidase S49 [Burkholderia phymatum STM815]
 gi|184198181|gb|ACC76144.1| peptidase S49 [Burkholderia phymatum STM815]
          Length = 311

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 92/234 (39%), Gaps = 16/234 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQ----------IEDS-----QELIERIERISRDDSATALIVS 72
                  +  +A +   G           I  S         + +     DDS   +++ 
Sbjct: 58  GEAARAGNGSIAVLPFYGVSVQRTTMVEDISGSGLMSIARFTQALRAAVADDSIGGVLID 117

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           + SPGGS Y  + +   I K + +K ++   + +AASA + I  ++           GSI
Sbjct: 118 VDSPGGSVYGVQELGDEIYKARGQKLIVACANSLAASAAFWIGSSAGEFYVTPGGEAGSI 177

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GV   +      L+K GV    + +   K E +P+  ++ +A   MQ  VDS Y  F R 
Sbjct: 178 GVFAAHENWAAALEKAGVEATLISAGKYKTEGNPYGPLSEEARTFMQSRVDSYYGAFTRA 237

Query: 193 VSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           V+ +R          + +GR+   +EAK   ++D V   ++V   +        
Sbjct: 238 VARNRGTDVATVRGGMGEGRVLGASEAKAANMVDDVATFDQVLGRMAKAIGQGK 291


>gi|324009542|gb|EGB78761.1| putative signal peptide peptidase SppA [Escherichia coli MS 57-2]
          Length = 430

 Score =  102 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 67  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 187 AVLEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 246

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSSDAITVMRD 282


>gi|306813973|ref|ZP_07448146.1| Minor capsid protein C from bacteriophage origin [Escherichia coli
           NC101]
 gi|222032926|emb|CAP75666.1| capsid protein of prophage [Escherichia coli LF82]
 gi|305852610|gb|EFM53058.1| Minor capsid protein C from bacteriophage origin [Escherichia coli
           NC101]
 gi|312945741|gb|ADR26568.1| Minor capsid protein C from bacteriophage origin [Escherichia coli
           O83:H1 str. NRG 857C]
          Length = 443

 Score =  102 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AVLEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSSDAITVMRD 295


>gi|288924896|ref|ZP_06418832.1| signal peptide peptidase SppA, 67K type [Prevotella buccae D17]
 gi|288338086|gb|EFC76436.1| signal peptide peptidase SppA, 67K type [Prevotella buccae D17]
          Length = 596

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 93/260 (35%), Gaps = 23/260 (8%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELI---------------- 54
           ++L  ++L  +  S +   + +   V  I ++G I +   ++ I                
Sbjct: 23  LILGFISLVGIMVSGNGTTKIDDNSVLVINLQGDISEKAEEDFIGRLTGNRINQLGLNEL 82

Query: 55  -ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
            + I++   +D    + +            + +   +   K     I    +      Y 
Sbjct: 83  KDAIKKAQDNDKIKGIYLQAGVLQSDYATLQELRNTLADFKKSGKWIIAYGDSYTQGAYY 142

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VN 171
           ++  +N +      ++   G+  +  + K   DK+G+  +  K    K+    ++E  ++
Sbjct: 143 LTSVANKLYLNPEGMLDWHGIAARIQFNKGLYDKVGLKYQVFKVGKFKSYTERYTEEQMS 202

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAK--KVGLIDVVGG 229
               + ++  ++  +   V  VS+SRNI   K   L+D  ++           ++D +  
Sbjct: 203 EPNHEQVKRYINGLWDIMVADVSKSRNIAPTKLRQLADSTLFLNDNKMLVSNKIVDGLLY 262

Query: 230 QEEVWQSLYALGVDQSIRKI 249
            +++  ++      +    I
Sbjct: 263 YDQLKAAMKKQLGIEEDEDI 282



 Score =  100 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 63/265 (23%), Positives = 111/265 (41%), Gaps = 22/265 (8%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRD------------DS 65
           +TV     +S  +     +A     G I    S+ L    + I  D            D 
Sbjct: 285 VTVGDVIEASEEDTKGDAIAVYYCEGSIVRMPSESLFGGEKEIVSDVVCSDLADLADDDD 344

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
             A+++ ++S GG AYA E ++R ++ +  +KPV+  +  MAAS  Y +S  +  +VA  
Sbjct: 345 VKAVVLRINSGGGDAYASEQLWRQVKLLNAKKPVVVSMSGMAASGAYYMSMGARWLVAQP 404

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM------- 178
           T+L GSIG+    P      ++        + +   A  S    + P A           
Sbjct: 405 TTLTGSIGIFACLPDFSELYNQKLGIRFDEEKTNEMATFSYPIGMVPMARHFNATEATAI 464

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           Q+ V+  Y  F + V+E R +   +   ++ GR+W G +A ++ LID +GG EE      
Sbjct: 465 QNYVNRGYVLFRQRVAEGRKMKTAQVEDVAQGRVWLGTDALRLKLIDQLGGLEEAMTKAA 524

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDL 263
            L   +     +++    ++    L
Sbjct: 525 QLAKLKK-YHAEEYPLVGSFLEQLL 548


>gi|212702705|ref|ZP_03310833.1| hypothetical protein DESPIG_00733 [Desulfovibrio piger ATCC 29098]
 gi|212673865|gb|EEB34348.1| hypothetical protein DESPIG_00733 [Desulfovibrio piger ATCC 29098]
          Length = 401

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 108/251 (43%), Gaps = 13/251 (5%)

Query: 38  VARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           VA I+I G I              + + ++   +D+    +++S +SPGG A   + +  
Sbjct: 48  VAVISITGVISRKESWWADVGQDGIRQALDEARQDERVRGILLSFNSPGGVAAGVKELAD 107

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
            I  +   KPV      + ASA Y ++ A+  + A   + VGS+GV+ +   +  FLDK+
Sbjct: 108 YIASID-DKPVAAYADGLTASAAYWLASATGRVYAPAMAQVGSVGVISEVRNISGFLDKM 166

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           GVSI  + S   K   +P  ++ P+     Q+ VD+ +  F   V++   I  D     +
Sbjct: 167 GVSITYIASGKWKTAGNPVEKLTPEQTAYFQERVDALHTVFKADVAQHMGISQD--PAWT 224

Query: 209 DGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + +I     A+++GL+  +   +++    L  + +  +          ++    +   L 
Sbjct: 225 EAQILFAQSAQQLGLVTAIVRDEDQAINRLLEVTMPDNSPDAPAQAMTRDRLAAEAPELL 284

Query: 268 ISSLLEDTIPL 278
            + L E     
Sbjct: 285 QALLEEGRDSA 295


>gi|116250715|ref|YP_766553.1| peptidase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255363|emb|CAK06438.1| putative peptidase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 286

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 116/269 (43%), Gaps = 21/269 (7%)

Query: 37  HVARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
            +  + ++G I               +   +E+      A A+ +S++SPGGS      I
Sbjct: 19  TIPVVRLQGAIISGGGQFRPTLNLANVSPVLEKAFAMKDAPAVAISINSPGGSPVQSRLI 78

Query: 87  FRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           F  I+++  + +K V+  V ++AAS GY+I+ A + I+A  TS+VGSIGV+         
Sbjct: 79  FTRIRELAREKQKKVLVFVEDVAASGGYMIALAGDEIIADATSIVGSIGVVSGGFGFPEL 138

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K+GV  +   +   K    PF     K ++ ++ +    +  F+ +V E R       
Sbjct: 139 LKKIGVERRVYTAGENKVILDPFQPEKEKDIEYLKSLQLEIHQVFISMVRERRAGKLRDD 198

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             +  G  W+G    ++GLID +G   +  +  Y         K++     +  +   + 
Sbjct: 199 AAVFSGLFWSGTRGLELGLIDGLGDMRQELKRRYGQT-----TKLELVTAGRGLFGRRIP 253

Query: 265 NLSISSLLED----TIPLMKQTKVQGLWA 289
            +S  SL          L++  + + LW+
Sbjct: 254 GVSPVSLEGAASGLATGLVEAAEERALWS 282


>gi|91975697|ref|YP_568356.1| peptidase S49 [Rhodopseudomonas palustris BisB5]
 gi|91682153|gb|ABE38455.1| peptidase S49 [Rhodopseudomonas palustris BisB5]
          Length = 299

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 123/287 (42%), Gaps = 19/287 (6%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATAL 69
            L        +    + P V  + + G I              +   +ER     +A A+
Sbjct: 13  VLAGFGKLIPARFRSDIPVVPVVRLSGVIGAVTPLRPGMTLAGVARLLERAFATRNAKAV 72

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETS 127
            ++++SPGGS      I+  I+ +   K  PVI  V ++AAS GY+I+CA++ I    +S
Sbjct: 73  ALAINSPGGSPVQSRLIYLRIRALAAEKKLPVIAFVEDVAASGGYMIACAADEIYCDPSS 132

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           +VGSIGV+      +  + K+GV  +   +   KA+  PF   +P  V  ++ +    + 
Sbjct: 133 IVGSIGVVGGGFGFQEMIKKIGVERRLYTAGDHKAQLDPFLPEDPADVARVKALQREIHA 192

Query: 188 WFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
            F+ LV +SR         VL  G  W GA +  +GL D +G    V ++ +   V   +
Sbjct: 193 LFISLVKDSRGARLKGAEDVLFSGEYWAGATSVSLGLSDAIGDLRAVLRARFGDKVRTPV 252

Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL--WAVW 291
                  PP       ++  S +    D +  + ++ +  L   A+W
Sbjct: 253 V-----APPSGLLASFMRRSSGAEASLDGLAALPESLISALETRAIW 294


>gi|114765597|ref|ZP_01444698.1| Periplasmic serine protease [Pelagibaca bermudensis HTCC2601]
 gi|114542046|gb|EAU45079.1| Periplasmic serine protease [Roseovarius sp. HTCC2601]
          Length = 457

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 86/227 (37%), Gaps = 15/227 (6%)

Query: 36  PHVARIAIRGQ-------IEDS-------QELIERIERISRDDSATALIVSLSSPGGSAY 81
             VA I I G        I +S       + +  ++   +       + + + S GG   
Sbjct: 78  DGVAVIPITGSLIHRGSYIGESFSGNQTYEGISAQLTAAAESPMVRGVALEIDSFGGEVA 137

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
               +   I+ +  +KPV   +   A SA Y I+  ++ I+   +   GSIGV+  +   
Sbjct: 138 GCFELADEIRALSAQKPVWAFISAHAFSAAYAIASQADRIIIPRSGGAGSIGVICMHADQ 197

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L+  GV +  + +   K + +P+  +     + +Q   +     F   V+E R    
Sbjct: 198 SERLEANGVRVTVISAGAHKGDGNPYEPLPEAVREDLQRECEDLRQLFAETVAEGRGDRL 257

Query: 202 DKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
                L ++ R + GA+A + GL D V      ++   A    +   
Sbjct: 258 TLEAALATEARTFIGAQAVEAGLADEVDNPRAAFERFVAQINGRPAP 304


>gi|114766960|ref|ZP_01445880.1| Periplasmic serine protease [Pelagibaca bermudensis HTCC2601]
 gi|114540867|gb|EAU43929.1| Periplasmic serine protease [Roseovarius sp. HTCC2601]
          Length = 457

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 86/227 (37%), Gaps = 15/227 (6%)

Query: 36  PHVARIAIRGQ-------IEDS-------QELIERIERISRDDSATALIVSLSSPGGSAY 81
             VA I I G        I +S       + +  ++   +       + + + S GG   
Sbjct: 78  DGVAVIPITGSLIHRGSYIGESFSGNQTYEGISAQLTAAAESPMVRGVALEIDSFGGEVA 137

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
               +   I+ +  +KPV   +   A SA Y I+  ++ I+   +   GSIGV+  +   
Sbjct: 138 GCFELADEIRALSAQKPVWAFISAHAFSAAYAIASQADRIIIPRSGGAGSIGVICMHADQ 197

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L+  GV +  + +   K + +P+  +     + +Q   +     F   V+E R    
Sbjct: 198 SERLEANGVRVTVISAGAHKGDGNPYEPLPEAVREDLQRECEDLRQLFAETVAEGRGDRL 257

Query: 202 DKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
                L ++ R + GA+A + GL D V      ++   A    +   
Sbjct: 258 TLEAALATEARTFIGAQAVEAGLADEVDNPRAAFERFVAQINGRPAP 304


>gi|241203318|ref|YP_002974414.1| peptidase S49 [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857208|gb|ACS54875.1| peptidase S49 [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 286

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 117/269 (43%), Gaps = 21/269 (7%)

Query: 37  HVARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
            +  + ++G I               +   +E+      A A+ +S++SPGGS      I
Sbjct: 19  TIPVVRLQGAIISGGGQFRPTLNLANVSPVLEKAFAMKDAPAIAISINSPGGSPVQSRLI 78

Query: 87  FRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           F  I+++  + +K V+  V ++AAS GY+I+ A + I+A  TS+VGSIGV+         
Sbjct: 79  FTRIRELAREKQKKVLVFVEDVAASGGYMIALAGDEIIADATSIVGSIGVVSGGFGFPEL 138

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K+GV  +   +   K    PF     K ++ ++ +    +  F+ +V E R       
Sbjct: 139 LKKIGVERRVYTAGENKVILDPFQPEKEKDIEYLKSLQLEIHQVFISMVRERRASKLRDD 198

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             +  G  W+G    ++GLID +G   +  +  Y         K++     +  +   + 
Sbjct: 199 ATVFSGLFWSGTRGLELGLIDGLGDMRQELKRRYGQK-----TKLELVTAGRGLFGRRIP 253

Query: 265 NLSISSLLED----TIPLMKQTKVQGLWA 289
            +S  SL +        L++  + + LW+
Sbjct: 254 GVSPVSLEDAASGLATGLVEAAEERALWS 282


>gi|146276161|ref|YP_001166320.1| peptidase S49 [Rhodobacter sphaeroides ATCC 17025]
 gi|145554402|gb|ABP69015.1| peptidase S49 [Rhodobacter sphaeroides ATCC 17025]
          Length = 461

 Score =  102 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 1/203 (0%)

Query: 39  ARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
           A I     +   + L +++   + D    A+++ L SPGG A    A+   +++V   KP
Sbjct: 92  AWIGASSGLTSYEGLAKQLTDAAADPKVKAIMLDLDSPGGEATGMFALAAKVREVAAEKP 151

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
           V+  V++MAASA Y I+  +  IV + TS+VGSIGV+  +      L   G+    + + 
Sbjct: 152 VVAVVNDMAASAAYGIASQATEIVVSPTSIVGSIGVVLTHLDRSGELAAKGIKPTLIHAG 211

Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAE 217
             K + +PF  ++      +Q  V   Y  FV LV++ R           ++ R + G E
Sbjct: 212 AHKVDGNPFGPLSDAVRADLQAEVGQFYDQFVGLVAQGRGAKLSAAKARATEARTFIGQE 271

Query: 218 AKKVGLIDVVGGQEEVWQSLYAL 240
           A   GL D V   E V  SL + 
Sbjct: 272 AIDRGLADRVSTFEAVLASLQSK 294


>gi|282879549|ref|ZP_06288280.1| signal peptide peptidase SppA, 67K type [Prevotella timonensis CRIS
           5C-B1]
 gi|281306497|gb|EFA98526.1| signal peptide peptidase SppA, 67K type [Prevotella timonensis CRIS
           5C-B1]
          Length = 589

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 90/261 (34%), Gaps = 23/261 (8%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------------QE 52
             +L ++++  +  S  +    +   V  + + G +++                     E
Sbjct: 22  LAILGVMSIIGMITSTQATQNVSKNSVLVLNLSGTLQEQSDDNVFGLFAQDSFGSLGLDE 81

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++  I++    D    + +          + + I  A+   K     I    +  +   Y
Sbjct: 82  ILSAIKKAKETDKIKGIYIESGMFVADYASRQEIRNALLDFKKSGKKIVAYADSYSQGNY 141

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEV 170
            I+  ++ +      ++   G+  +  ++K  L K G+  + +K    K+    F   ++
Sbjct: 142 YIASVADKVFLNPQGMIDWHGIGAEPMFLKDLLAKFGIRFQVIKVGKYKSATESFTADKM 201

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW--TGAEAKKVGLIDVVG 228
           +    +  Q  ++  +    + VS+SR I  DK    +D  I      +     L+D + 
Sbjct: 202 SEPNREQTQAYINGLWANVCQAVSQSRKISVDKLNEYADSLIAFNNPKDYVSAKLVDGLL 261

Query: 229 GQEEVWQSLYALGVDQSIRKI 249
             +EV + +           I
Sbjct: 262 YTDEVKKEVKKTFDLDMDDPI 282



 Score = 99.3 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 122/274 (44%), Gaps = 17/274 (6%)

Query: 30  HVEDNSPHVARIAIRGQIED---------------SQELIERIERISRDDSATALIVSLS 74
             + +   +A     G I D                 ++ + +E ++ DD    +++ ++
Sbjct: 294 KEKSDGDEIAVYYAYGNIVDNPITGGIFGGQHAIVGPDVCKDLEALADDDDVKGVVLRIN 353

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           S GGSAYA E ++  I ++K +KPV+  +  MAAS GY +SC +N IVA  T+L GSIG+
Sbjct: 354 SGGGSAYASEQMWHQIAELKKKKPVVVSMGGMAASGGYYMSCNANWIVAQPTTLTGSIGI 413

Query: 135 LFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
               P     L  KLG+    VK++      S    +N + +  +   +D  Y+ F + V
Sbjct: 414 FGMIPDRSQLLTQKLGIKFDEVKTNRNALMGSNARPMNEEEIGYLTRYIDRGYNLFRKRV 473

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           ++ R +  ++   ++ G ++ G +A K+ L+D +GG ++      A           ++ 
Sbjct: 474 ADGRKMSINQVEEIAQGHVFLGQDALKIKLVDELGGLDKAIAK-AAKLAKIDKYHTSNYP 532

Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
              ++     K     + L++ +        +  
Sbjct: 533 GGDDWLEQLFKMTGGGNYLDEQMRTALGDYYEPF 566


>gi|269302396|gb|ACZ32496.1| putative signal peptide peptidase SppA, 36K type [Chlamydophila
           pneumoniae LPCoLN]
          Length = 333

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 137/304 (45%), Gaps = 36/304 (11%)

Query: 3   FVLKKIKTRY-----VMLSLVTLTVVYFSWSSHVE-----------------DNSPHVAR 40
           FV K   +       V+L+ V +  +  S   + +                   +P +A 
Sbjct: 7   FVSKAFLSIVGLCCGVVLAFVVIFALIASSLGNGDATFVSLPDAQGEVKDLGKTAPIIAV 66

Query: 41  IAIRGQIEDS-------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
           I ++  I  S       Q ++E  E+    D    +++ +  PGG  +  + I+  ++  
Sbjct: 67  IEMKDVIASSKNTAKTIQNILEGFEKAPLKDRVKGIVIDMDCPGGEVFEIDRIYSMLRFW 126

Query: 94  KNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYPYVKPFLDKLGV 150
           K RK  P+   V+ + AS GY +SCA+  I A  +SL+GSIGV    +  VK  L++ GV
Sbjct: 127 KERKGFPIYIYVNGLCASGGYYVSCAATKIYATSSSLIGSIGVRSGPFFNVKEGLNRYGV 186

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN-IPYDKTLVLSD 209
               + +   KA  +P+        +  Q  +D  Y  FV +V+++R  +  +K +    
Sbjct: 187 ESDLLTAGKDKAPMNPYIPWTSHDREERQATLDFLYGQFVDIVTQNRPLLTKEKLVHTLG 246

Query: 210 GRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
            RI++  +AK+ G IDVVG  +E+V Q + A+   +   ++       + W+  + + + 
Sbjct: 247 ARIFSPEKAKQEGYIDVVGATKEQVLQDIVAVCKIEDNYRVI--GSGGDGWWKRVASAAA 304

Query: 269 SSLL 272
           SS L
Sbjct: 305 SSPL 308


>gi|23016403|ref|ZP_00056159.1| COG0616: Periplasmic serine proteases (ClpP class)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 410

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 107/258 (41%), Gaps = 16/258 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVS 72
           + S+ V   S  +A I + G +                 ++ + IE  + D    A+++ 
Sbjct: 46  APSADVAVTSDGIAIIPVIGTLVARSGYLGAASGLTAYSDIADTIEAAATDPGVRAILLD 105

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + S GG       +   IQ ++++  KP+     E A SA Y I+C ++ +   +T  VG
Sbjct: 106 VDSSGGEVGGLFDLVDHIQAIRSQCGKPIWAVADEAALSAAYAIACTADRLYVTQTGEVG 165

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+  +        + G++   V +   K + +P   ++  A  M+Q  VD+ Y  F 
Sbjct: 166 SIGVVAVHRDESGADAQAGLAWSFVHAGAAKVDGNPHQPLSDSARAMLQADVDALYGKFT 225

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
            LV+E R +  D      + +++ G +A   GL D VG        L A     SIR   
Sbjct: 226 TLVAERRCLSPDVVRAT-EAQVYRGDQAVTAGLADKVGTMRIALADLGATLARPSIRSPV 284

Query: 251 DWNPPKNYWFCDLKNLSI 268
              P +        ++ +
Sbjct: 285 LSKPKETTMSEQTGDIPV 302


>gi|254476437|ref|ZP_05089823.1| peptidase S49 [Ruegeria sp. R11]
 gi|214030680|gb|EEB71515.1| peptidase S49 [Ruegeria sp. R11]
          Length = 265

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 14/248 (5%)

Query: 33  DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
              P VA + ++G I        +   L   +ER  R     A+   ++SPGGS      
Sbjct: 9   KKPPLVAVVRLQGAIGMAGRGALNDVTLAPVLERAFRKGKPAAVAFEINSPGGSPVQSAL 68

Query: 86  IFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           I   I+++    + P +  V ++AAS GY ++ +++ I A ++S+VGSIGV+        
Sbjct: 69  IGARIRRLSQELKVPTLAFVEDVAASGGYWLAASADEIYADDSSVVGSIGVISAGFGAHV 128

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L + GV  +   +   K+   PF   NP+ V  +++++   +  F+  V + R     +
Sbjct: 129 LLARQGVERRVYTAGKSKSMLDPFRPENPEDVARLKELLGDIHENFITHVKDRRGDKLVQ 188

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              L  G IW G  A  +GLID +   + +   L A   D+   +++ +   K       
Sbjct: 189 DQDLFTGEIWLGRRAVSLGLIDGI---DHLRPKLQARFGDK--VRLRRYGVKKPLLGRLG 243

Query: 264 KNLSISSL 271
             ++  +L
Sbjct: 244 MQVAQDAL 251


>gi|282891036|ref|ZP_06299541.1| hypothetical protein pah_c045o044 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499029|gb|EFB41343.1| hypothetical protein pah_c045o044 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 344

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 69/329 (20%), Positives = 131/329 (39%), Gaps = 38/329 (11%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVE----------------------DNSPHVAR 40
           F++   K   V+L ++     +  + S                           +P V  
Sbjct: 13  FIIAFCKIFGVLLGVLLAISAFSLFESKESEITSEYSLEIAPNAKNVRTALSSTAPVVLV 72

Query: 41  IAIRGQIEDS--------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
           + I G I           Q+LIE  E    ++   A+ + +++PGG+ +  + I+R+++ 
Sbjct: 73  LPIDGLIGGESLNAKTVRQQLIESREGTLSNNRVKAIFLEINTPGGTVFDADGIYRSLKA 132

Query: 93  VKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYPYVKPFLDKLG 149
            K     PV   V  + AS G  ++ A++ + A++ SLVGS+GV+   Y  +   LDK+G
Sbjct: 133 YKKEFDVPVFAYVDGLCASGGMYVASAADKVYASDVSLVGSVGVITSSYLNLSQLLDKIG 192

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI-PYDKTLVLS 208
           V   ++ +   K E +P     P     MQ +++  Y  FV +V+ +R     +K +   
Sbjct: 193 VQSLTLSAGKGKDELNPLRPWKPGEQDKMQGLINFYYQHFVGVVTANRPQLNKEKLVDEY 252

Query: 209 DGRIWTGAEAKKVGLIDVVGGQE-EVWQSLYALGVDQSIRKIKDWNPPKNYW---FCDLK 264
              ++   EA   G ID  G    E  ++L      +           KN++   F +  
Sbjct: 253 GASVFPADEAFAKGYIDGSGFSRGEALKALLKQIGIEDDFYQVMKFQGKNWFSQIFSETN 312

Query: 265 NLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
            L+  S+       +          +++P
Sbjct: 313 ALASGSIQLRLPQELDAKFSNQPLYLYHP 341


>gi|254452000|ref|ZP_05065437.1| peptidase S49 [Octadecabacter antarcticus 238]
 gi|198266406|gb|EDY90676.1| peptidase S49 [Octadecabacter antarcticus 238]
          Length = 262

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 64/259 (24%), Positives = 111/259 (42%), Gaps = 20/259 (7%)

Query: 33  DNSPHVARIAIRGQIE------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
            + PHVA I ++G I         + L + IE+  R     A+ + +SSPGGS      I
Sbjct: 9   KSDPHVAVIRLQGAIATSGRALSDRGLADSIEKAFRSKP-KAVALEISSPGGSPVQSSLI 67

Query: 87  FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
              I+++ + K  PV + V ++AAS GY ++ A + I     S+VGSIGV+     +   
Sbjct: 68  CARIRRLADEKDIPVYSFVEDVAASGGYWLATAGDEIYVDRGSIVGSIGVISAGFGLTGT 127

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           LDK+G   +   +   K+   PF    P  V+ ++ ++   + +F   VS  R       
Sbjct: 128 LDKIGAERRVYTAGKSKSMLDPFQAEKPADVKRLKGLLRDMHVFFKDHVSTRRAGKLVD- 186

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             L  G IW G ++  VGL D +G      +  +         K + +   K        
Sbjct: 187 QDLFTGDIWVGQKSIDVGLADHLGHLVPTMKDRFG-----DKTKFRRFGQKKPLLARF-- 239

Query: 265 NLSISSLLEDTIPLMKQTK 283
               + +++D    +++  
Sbjct: 240 ---GAQIIDDAYGGIEERA 255


>gi|330813966|ref|YP_004358205.1| macromolecule degradation protein [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487061|gb|AEA81466.1| macromolecule degradation protein [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 267

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 114/238 (47%), Gaps = 17/238 (7%)

Query: 38  VARIAIRGQIEDSQELI---------ERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           +A I + G I +              E I++        A+ ++++SPGGS      ++ 
Sbjct: 9   IAHIRLSGVIGNVGRFQQGLSYASHHEIIKKAFSLKKIKAVAITINSPGGSPVQSHLLYS 68

Query: 89  AIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
            I+K+ + K V  IT   ++AAS GY+++CA + I A  +S++GSIGV++     +  + 
Sbjct: 69  LIRKLADEKKVKVITFAEDVAASGGYMLACAGDEIYANASSILGSIGVIYSGFGFQELIK 128

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTL 205
           K GV  +   +   K+   PF E  P+ +Q ++ + +  +  F+ LV  SR         
Sbjct: 129 KAGVERRVHTAGTSKSILDPFVEEKPEDIQKLKAIQEELHKEFILLVKNSRKGKITLADD 188

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
            L  G  W G+++K++GLID +G   +V +  +         K+K++   + +    L
Sbjct: 189 KLFTGEFWAGSKSKELGLIDGIGNMFQVIEDQFG-----KDVKVKNFEKQEGWLKKKL 241


>gi|324114286|gb|EGC08257.1| peptidase S49 [Escherichia fergusonii B253]
          Length = 439

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 VFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRE-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +   + 
Sbjct: 318 VSATASQADVTDVVSATEG 336


>gi|331646437|ref|ZP_08347540.1| minor capsid protein C (GPC) [Escherichia coli M605]
 gi|331045189|gb|EGI17316.1| minor capsid protein C (GPC) [Escherichia coli M605]
          Length = 484

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 125 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 184

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 185 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 244

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 245 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 304

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 305 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 362

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + +   +P  + 
Sbjct: 363 VSATASQADVTGVVPATEG 381


>gi|327252651|gb|EGE64308.1| minor capsid protein C [Escherichia coli STEC_7v]
          Length = 439

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + +   +P  + 
Sbjct: 318 VSATASQADVTGVVPATEG 336


>gi|330910981|gb|EGH39491.1| head-tail preconnector protein GP5 [Escherichia coli AA86]
          Length = 439

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + +   +P  + 
Sbjct: 318 VSATASQADVTGVVPATEG 336


>gi|327253537|gb|EGE65170.1| minor capsid protein C domain protein [Escherichia coli STEC_7v]
          Length = 315

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295


>gi|323963682|gb|EGB59198.1| peptidase S49 [Escherichia coli M863]
          Length = 439

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295


>gi|163739566|ref|ZP_02146976.1| peptidase, family S49 [Phaeobacter gallaeciensis BS107]
 gi|161387319|gb|EDQ11678.1| peptidase, family S49 [Phaeobacter gallaeciensis BS107]
          Length = 265

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 9/205 (4%)

Query: 36  PHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           P VA + + G I        +   L   +ER  R     A+   ++SPGGS      I  
Sbjct: 12  PLVAVVRLNGAIGMAGRGALNDAALGPVLERAFRKGKPAAVAFEINSPGGSPVQSALIGA 71

Query: 89  AIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
            I+++    + P I  V ++AAS GY ++ +++ I A E+S++GSIGV+        FL 
Sbjct: 72  RIRRLSEELKVPTIAFVEDVAASGGYWLAASADEIWADESSILGSIGVISAGFGAHVFLA 131

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           + GV  +   +   K+   PF   N + V+ ++ ++   +  F+  V + R    D +  
Sbjct: 132 RQGVERRVYTAGRSKSMLDPFRPENAEDVKRLKQLLGDIHDNFIAHVKDRRGDKLDTSKD 191

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQE 231
           L  G IW G  A  +GLID +G   
Sbjct: 192 LYTGEIWLGRRAVSLGLIDGIGHLR 216


>gi|253572823|ref|ZP_04850222.1| protease IV [Bacteroides sp. 1_1_6]
 gi|251837555|gb|EES65647.1| protease IV [Bacteroides sp. 1_1_6]
          Length = 491

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 98/264 (37%), Gaps = 26/264 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49
             ++ +VTL  +  +  +        V  + + G +                        
Sbjct: 22  LFIIGMVTLFGIVSTADTETIVKKNSVMMLDLNGVLVERTQESPLGILSQLFSDDSNTYG 81

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
             +++  I++   +++   + +  S  G S  + + I  A+   K     I    +    
Sbjct: 82  LDDILSSIKKAKENENIKGIYLQASMLGTSYASLQEIRNALLDFKESGKFIIAYGDSYTQ 141

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167
             Y +S  ++ ++     ++   G+     + K  L K+GV ++  K    K+   PF  
Sbjct: 142 GLYYLSSVADKVLLNPKGMIEWKGIASAPLFYKDLLQKIGVEMQIFKVGTYKSAVEPFIS 201

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225
           +E++P   + +   ++S +      VS SR++P D    L+D     +   E+ + GL D
Sbjct: 202 TEMSPANREQVTAFINSIWGQVTEGVSASRSLPVDSLNALADRMLMFYPAEESVQCGLAD 261

Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249
            +  + +V   L      +   ++
Sbjct: 262 TLIYRNDVRNYLKQWVDLKEDDRL 285



 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 12/203 (5%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRD 63
            L    ++    +   + +   VA     G+I D              ++I  + ++  D
Sbjct: 287 VLGLSDMINVKKNMPKDKSGNIVAVYYASGEITDYSGSSTSEEGIVGTKVIRDLRKLKDD 346

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
           +   A+++ ++SPGGSA+A E I+ A++++K  KPVI  + + AAS GY ISC ++ IVA
Sbjct: 347 EDVKAVVLRVNSPGGSAFASEQIWHAVKELKTEKPVIVSMGDYAASGGYYISCVADTIVA 406

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
             T+L GSIG+    P VK   +K+G++   VK++      +     N     +MQ ++ 
Sbjct: 407 EPTTLTGSIGIFGMVPNVKELSEKIGLTYDVVKTNKFSDFGNIMRPFNQDEKTLMQMMIT 466

Query: 184 SSYHWFVRLVSESRNIPYDKTLV 206
             Y  FV   +E R++  +    
Sbjct: 467 QGYDTFVNRCAEGRHMSKEAIEE 489


>gi|289582290|ref|YP_003480756.1| peptidase S49 [Natrialba magadii ATCC 43099]
 gi|289531843|gb|ADD06194.1| peptidase S49 [Natrialba magadii ATCC 43099]
          Length = 328

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 90/273 (32%), Gaps = 27/273 (9%)

Query: 29  SHVEDNSPHVARIAIRGQIE--DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
                    VA I +   I    + ++   +     ++S  A+++ + SPGG   A E +
Sbjct: 39  GAASGPDGTVAVIEVDQSITEASAADITADLAEARENESIDAVVLDVDSPGGGVTASEQL 98

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
           + A+ +     PV+T V  M  S  Y +S  ++ +  + +S VGSIGV   +    P +D
Sbjct: 99  YLAVDRTAAEMPVVTSVQSMGTSGAYYMSAPTDEMYVSPSSTVGSIGVRATHLD-SPPMD 157

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTL 205
                   V + P K   +     +                 F+  V E R    +    
Sbjct: 158 G------EVTTGPDKGSMTADQVKDQTEQM---------KQTFLGSVLEHRGDELELTER 202

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            LS  +++ G EA + GL D +G  E    +           ++             +  
Sbjct: 203 ELSYAKVYIGTEAVENGLADEIGDTEVAIGAAADRAGL-DDYEVVRMEREAALGTGVVLE 261

Query: 266 LSISSLLE-------DTIPLMKQTKVQGLWAVW 291
              S            T             A+W
Sbjct: 262 SGESVDAGSEPHVHPQTFGQYGDVTTPAFLALW 294


>gi|58616276|ref|YP_195405.1| periplasmic serine protease (ClpP class) [Azoarcus sp. EbN1]
 gi|56315737|emb|CAI10381.1| predicted periplasmic serine proteases (ClpP class) [Aromatoleum
           aromaticum EbN1]
          Length = 329

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/276 (22%), Positives = 118/276 (42%), Gaps = 19/276 (6%)

Query: 2   EFVLKKIKTRYVMLSLVTLTVVYFS-------WSSHVEDNSPHVARIAIRGQIED---SQ 51
           +   + +   + +   V   + Y S            ++  P +A + I G I +   + 
Sbjct: 39  KLFRRFMIASFFIGGAVLYAMFYTSTLGIKVNIFERFKEREPELAVVRISGTIGELVTAD 98

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ--KVKNRKPVITEVHEMAAS 109
            LI  I       +  A+++ ++SPGG+    E I   ++  ++ +  P+   +  + AS
Sbjct: 99  TLIPAIRSAFEAKTTKAVVLQINSPGGAPGDAERIGSFVREMRLSSEIPIHAVIEGIGAS 158

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A YLI+  ++ I A   SLVGSIG +         LD++GV  ++  S  +K+  +PF+ 
Sbjct: 159 AAYLIAMETDSIYAGRYSLVGSIGAVLSAWEAHQLLDRIGVQQRTFSSGELKSMLNPFAP 218

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
            N +     Q +VD     F   +  +R       +    G +W G  A+++GL+D +G 
Sbjct: 219 PNEEGNAKAQSLVDEMGEMFREDLMLARAKKLTSGIDYGTGEVWNGVVAQEIGLVDEIGT 278

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            E +            + K++ + P + Y F  +  
Sbjct: 279 IESIQSK-------YGLEKLRVYRPFRPYSFMRMMA 307


>gi|300936151|ref|ZP_07151089.1| putative signal peptide peptidase SppA [Escherichia coli MS 21-1]
 gi|300458690|gb|EFK22183.1| putative signal peptide peptidase SppA [Escherichia coli MS 21-1]
          Length = 426

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 67  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 246

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 304

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +   + 
Sbjct: 305 VSATASQADVTDVVQATEG 323


>gi|170742279|ref|YP_001770934.1| peptidase S49 [Methylobacterium sp. 4-46]
 gi|168196553|gb|ACA18500.1| peptidase S49 [Methylobacterium sp. 4-46]
          Length = 481

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 1/194 (0%)

Query: 44  RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103
            G I   +    ++   + D    A+++ L SPGG A         +++V ++K V   V
Sbjct: 121 SGLI-SYEGFAYQMRMAAADPRTKAILLDLESPGGEAVGAFEAAELVRQVASQKSVTALV 179

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
           + MA+SA Y I+  ++ IV+  T L GSIGV+  +  +  +L   G+    + +   K +
Sbjct: 180 NGMASSAAYAIASGASRIVSIPTGLAGSIGVVLMHLDISEYLRAEGMKPTLIFAGDHKVD 239

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
            +PF  +       +Q  V+  Y  FV  V+  R    ++ +  ++ R + G EA K GL
Sbjct: 240 WNPFEPLPDAVRADLQKEVEGFYAKFVTTVAAGRPGLSEQAIRDTEARTFMGEEAIKAGL 299

Query: 224 IDVVGGQEEVWQSL 237
           +D +G  + V   L
Sbjct: 300 VDAIGTFDAVLADL 313


>gi|227540619|ref|ZP_03970668.1| protease IV [Sphingobacterium spiritivorum ATCC 33300]
 gi|227239558|gb|EEI89573.1| protease IV [Sphingobacterium spiritivorum ATCC 33300]
          Length = 473

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 98/270 (36%), Gaps = 25/270 (9%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------------- 47
           V+  +    V+  ++   +   S  +        V  I +  +I                
Sbjct: 16  VIATVILFIVIAGIIGSLISSASTDAAPVVADNSVLYITLNHEIKERSETNPLEGVDIPG 75

Query: 48  ------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
                     +++ERI+    D     + +++S         + I  A+   K  K  I 
Sbjct: 76  FGTTKTLGLDDILERIQSAKSDSKIKGIYLNISGVNTGFATLQEIRDALIDFKASKKFIV 135

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
              E      Y ++  ++ I       +   G+     ++K  LDKLGV ++ VK    K
Sbjct: 136 SYSEGYTQKAYYLASVADKIYLNPEGSLDFRGLSTSIMFMKDALDKLGVDMQVVKVGTYK 195

Query: 162 AEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEA 218
           +   PF    ++      ++  + S Y  F+  VS SR IP D    ++D   +    +A
Sbjct: 196 SAVEPFMLNGMSQPNRLQVESYLGSLYATFLDNVSASRKIPADSLRSIADRYAVRDAEDA 255

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            ++ L+D V  ++E+   +      +  +K
Sbjct: 256 VRLKLVDAVLYKDELIDEVKKRLNIKDKKK 285



 Score = 77.7 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 11/187 (5%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSAT 67
             T++++ +  +S   +    VA +   G I           S ++   + ++  DD   
Sbjct: 287 FSTVSILDYRANSTTSEGEGRVAVLYAEGDIVSGEGESGQIASDKVSRELRKLREDDRVK 346

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           A++  ++SPGGSA A + I+R +   K  KP+I  + + AAS GY IS A++ I A   +
Sbjct: 347 AVVFRVNSPGGSALASDVIWREVILTKKVKPIIVSMGDYAASGGYYISAAADSIFAERNT 406

Query: 128 LVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPS-PFSEVNPKAVQMMQDVVDSS 185
           + GSIGV    P  K  L DKLG+    VK+       S P   +  +   ++Q  V+ +
Sbjct: 407 ITGSIGVFGLIPNFKGLLNDKLGIHFDGVKTGAYADLMSAPDRPLTAEERNIIQLEVNKT 466

Query: 186 YHWFVRL 192
           Y  F + 
Sbjct: 467 YGSFTKK 473


>gi|254509786|ref|ZP_05121853.1| peptidase, family S49 [Rhodobacteraceae bacterium KLH11]
 gi|221533497|gb|EEE36485.1| peptidase, family S49 [Rhodobacteraceae bacterium KLH11]
          Length = 265

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/265 (22%), Positives = 115/265 (43%), Gaps = 19/265 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQI-------EDSQELIERIERISRDDSATALIVSLSSPGGSA 80
           S       P VA + + G I        ++  L   +ER  R     A+ + ++SPGGS 
Sbjct: 4   SLPFVKKQPLVAVVRLSGAIGMAGRGSMNANALAPVLERAFRKGKPAAVALEVNSPGGSP 63

Query: 81  YAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
                I   I+++ +    PV   V ++AAS GY ++ +++ I A ++S++GSIGV+   
Sbjct: 64  VQSSLIGARIRRLADELDIPVYAFVEDVAASGGYWLAASADEIWADDSSVLGSIGVISSG 123

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                FL + GV  +   +   K+   PF+    + V  ++ ++   +  F+  V   R+
Sbjct: 124 FGAHVFLARQGVERRVHTAGQSKSMLDPFAPEKKEDVARLKVLLGDIHENFIDHVKSRRD 183

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
              D    L +G +W    A+++GLID +   +   Q  +         + + +   K  
Sbjct: 184 GKLDPEADLFNGEVWLARRAQELGLIDGIAHLKPKMQERFG-----DKVRFRRYGLRKPI 238

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTK 283
           W         +++ +D I  +++  
Sbjct: 239 WSRF-----GATVAQDAIAGLEERA 258


>gi|331676489|ref|ZP_08377186.1| minor capsid protein C (GPC) [Escherichia coli H591]
 gi|331075982|gb|EGI47279.1| minor capsid protein C (GPC) [Escherichia coli H591]
          Length = 484

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 125 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 184

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 185 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 244

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 245 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 304

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 305 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 340


>gi|331672678|ref|ZP_08373467.1| minor capsid protein C (GPC) [Escherichia coli TA280]
 gi|331070321|gb|EGI41687.1| minor capsid protein C (GPC) [Escherichia coli TA280]
          Length = 484

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 125 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 184

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 185 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 244

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 245 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 304

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 305 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 340


>gi|324017645|gb|EGB86864.1| putative signal peptide peptidase SppA [Escherichia coli MS 117-3]
          Length = 426

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 67  NGIAVLPVSGTLVNRTRALQPHSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 246

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 282


>gi|323190876|gb|EFZ76143.1| minor capsid protein C [Escherichia coli RN587/1]
          Length = 439

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295


>gi|323168446|gb|EFZ54126.1| minor capsid C protein [Shigella sonnei 53G]
          Length = 439

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295


>gi|320194281|gb|EFW68913.1| Head-tail preconnector protein GP5 [Escherichia coli WV_060327]
          Length = 439

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295


>gi|320180588|gb|EFW55518.1| Head-tail preconnector protein GP5 [Shigella boydii ATCC 9905]
          Length = 439

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295


>gi|320654518|gb|EFX22546.1| Minor capsid protein C from bacteriophage origin [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
          Length = 439

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295


>gi|300825402|ref|ZP_07105476.1| putative signal peptide peptidase SppA [Escherichia coli MS 119-7]
 gi|300522129|gb|EFK43198.1| putative signal peptide peptidase SppA [Escherichia coli MS 119-7]
          Length = 426

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 67  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 246

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 282


>gi|300929060|ref|ZP_07144554.1| putative signal peptide peptidase SppA [Escherichia coli MS 187-1]
 gi|300462933|gb|EFK26426.1| putative signal peptide peptidase SppA [Escherichia coli MS 187-1]
          Length = 426

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 67  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 246

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 282


>gi|300897573|ref|ZP_07115983.1| putative signal peptide peptidase SppA [Escherichia coli MS 198-1]
 gi|300358676|gb|EFJ74546.1| putative signal peptide peptidase SppA [Escherichia coli MS 198-1]
          Length = 403

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 67  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 246

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 282


>gi|293403702|ref|ZP_06647790.1| head protein [Escherichia coli FVEC1412]
 gi|298383397|ref|ZP_06992983.1| minor capsid protein C bacteriophage origin [Escherichia coli
           FVEC1302]
 gi|291429117|gb|EFF02140.1| head protein [Escherichia coli FVEC1412]
 gi|298276193|gb|EFI17720.1| minor capsid protein C bacteriophage origin [Escherichia coli
           FVEC1302]
          Length = 472

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 113 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 172

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 173 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 232

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 233 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 292

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 293 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 328


>gi|293418637|ref|ZP_06661072.1| capsid protein [Escherichia coli B088]
 gi|291325165|gb|EFE64580.1| capsid protein [Escherichia coli B088]
          Length = 439

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295


>gi|291281485|ref|YP_003498303.1| Minor capsid protein C [Escherichia coli O55:H7 str. CB9615]
 gi|290761358|gb|ADD55319.1| Minor capsid protein C [Escherichia coli O55:H7 str. CB9615]
          Length = 439

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295


>gi|284921449|emb|CBG34518.1| phage minor capsid protein [contains: capsid assembly protein]
           [Escherichia coli 042]
          Length = 439

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295


>gi|218704649|ref|YP_002412168.1| Minor capsid protein [Escherichia coli UMN026]
 gi|218431746|emb|CAR12628.1| Minor capsid protein [Contains: Capsid assembly protein NU3] from
           bacteriophage origin [Escherichia coli UMN026]
          Length = 439

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295


>gi|218703860|ref|YP_002411379.1| Minor capsid protein C from bacteriophage origin [Escherichia coli
           UMN026]
 gi|218430957|emb|CAR11831.1| Minor capsid protein C from bacteriophage origin [Escherichia coli
           UMN026]
          Length = 481

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 118 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 177

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 178 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 237

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 238 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 297

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 298 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 333


>gi|163741908|ref|ZP_02149297.1| peptidase, family S49 [Phaeobacter gallaeciensis 2.10]
 gi|161384629|gb|EDQ09009.1| peptidase, family S49 [Phaeobacter gallaeciensis 2.10]
          Length = 265

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 9/208 (4%)

Query: 33  DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           +  P VA + + G I        +   L   +ER  R     A+   ++SPGGS      
Sbjct: 9   NKPPLVAVVRLNGAIGMAGRGALNDAALGPVLERAFRKGKPAAVAFEINSPGGSPVQSAL 68

Query: 86  IFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           I   ++++    + P I  V ++AAS GY ++ +++ I A E+S++GSIGV+        
Sbjct: 69  IGARVRRLSEELKVPTIAFVEDVAASGGYWLAASADEIWADESSILGSIGVISAGFGAHV 128

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL + GV  +   +   K+   PF   N + V+ ++ ++   +  F+  V + R    D 
Sbjct: 129 FLARQGVERRVYTAGRSKSMLDPFRPENAEDVKRLKQLLGDIHDNFIAHVKDRRGDKLDT 188

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
           +  L  G IW G  A  +GLID +G   
Sbjct: 189 SEDLYTGEIWLGRRAVSLGLIDGIGHLR 216


>gi|74312884|ref|YP_311303.1| putative minor capsid protein [Shigella sonnei Ss046]
 gi|73856361|gb|AAZ89068.1| putative minor capsid protein precursor [Shigella sonnei Ss046]
          Length = 426

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 67  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 246

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 282


>gi|260854308|ref|YP_003228199.1| putative minor capsid protein [Escherichia coli O26:H11 str. 11368]
 gi|260855084|ref|YP_003228975.1| putative head protein/prohead protease [Escherichia coli O26:H11
           str. 11368]
 gi|260855722|ref|YP_003229613.1| putative head protein/prohead protease [Escherichia coli O26:H11
           str. 11368]
 gi|257752957|dbj|BAI24459.1| putative minor capsid protein [Escherichia coli O26:H11 str. 11368]
 gi|257753733|dbj|BAI25235.1| putative head protein/prohead protease [Escherichia coli O26:H11
           str. 11368]
 gi|257754371|dbj|BAI25873.1| putative head protein/prohead protease [Escherichia coli O26:H11
           str. 11368]
          Length = 439

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPGDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + +   +P M+ 
Sbjct: 318 VSATASQADVTGVVPAMEG 336


>gi|319764217|ref|YP_004128154.1| peptidase s49 [Alicycliphilus denitrificans BC]
 gi|317118778|gb|ADV01267.1| peptidase S49 [Alicycliphilus denitrificans BC]
          Length = 451

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 87/219 (39%), Gaps = 15/219 (6%)

Query: 36  PHVARIAIRGQIE--------------DSQELIERIERISRDDSATALIVSLSSPGGSAY 81
             VA +++ G +                  +L   +E    +    A+++   SPGG A 
Sbjct: 76  DGVAVLSVSGVLVHRSRLDMAESTFFYGYNDLAADLEDAMANPEVHAVLLVYDSPGGEAQ 135

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                 + +  ++ RKP+      MAASA YL   A+       T + GSIGV+ ++  +
Sbjct: 136 GAFEYAQRVHAMRGRKPLWAISDGMAASAAYLGGSAAEQFAITSTGIAGSIGVVARHVDL 195

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              LD  G+++  + +   K + +P+  +     +  Q  +D+ Y  F+  V+  R I  
Sbjct: 196 SRALDAEGITVTHIFAGSHKVDGNPYEPLPESVRKDWQAEIDNLYGMFIDAVATHRGIDV 255

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                      +TG  A    L D +   + +   L AL
Sbjct: 256 RAVRATQAAT-YTGQAAVDARLADRIATTDSLIAELAAL 293


>gi|261415381|ref|YP_003249064.1| signal peptide peptidase SppA, 36K type [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371837|gb|ACX74582.1| signal peptide peptidase SppA, 36K type [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327693|gb|ADL26894.1| signal peptide peptidase SppA domain protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 764

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 106/228 (46%), Gaps = 5/228 (2%)

Query: 27  WSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
                 ++   VA + I G I+    + +++ + R+       AL+V +SSPGGSA A +
Sbjct: 495 IFDESWNHRAKVALLNINGTIDSRMEESVLDNLRRLPGM-GVKALLVRISSPGGSAIASD 553

Query: 85  AIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
            I+ A++ ++    P++  +     S  Y I+C ++ I+A   ++VGSIG+         
Sbjct: 554 KIWGALKNLRRFDIPIVASIGSSGTSGAYYIACGADKIIAEPFAIVGSIGIYGGKIDASG 613

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            + K+G+  + VK++      S            +Q+ +D  Y+ F  +VS++  I    
Sbjct: 614 LMQKVGLRNEPVKTNDYSDARSFARPWTDTEKAALQEYMDDFYNRFTGVVSQATGIDQAV 673

Query: 204 TLVLSDG-RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
              +  G R+  G +AK+ GL+  +GG ++    +  L       +I+
Sbjct: 674 VDSVYGGGRVMVGWKAKEAGLVHSLGGFDDALDEVRKLADIPKSTEIE 721



 Score = 75.4 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 105/291 (36%), Gaps = 23/291 (7%)

Query: 21  TVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSA 66
           ++ + +  +     S  + R+ +  ++ + ++              +    E + RD +A
Sbjct: 234 SIGFHASRNPKASRSAQIVRVPLNMEVSEVEKKFLFFAPSSIGLMKVRNLFEHLLRDPAA 293

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
             +++  S   G+    E I R ++K+K R  ++    +    +    +   + +V   +
Sbjct: 294 GLVVLDFSGYNGNLAISEEINRYVKKLKARGGLVIAYMDDVRPSVLTAAANVDRVVVEPS 353

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDS 184
           +    +G+     + K  LDKLGV ++ ++    K+   P++   ++  A + ++ +   
Sbjct: 354 AHFTWLGLGGGITFYKGILDKLGVKVEFLRHGAFKSAVEPYTADSMSVNARENIETLYKD 413

Query: 185 SYHWFVRLVSESRNI-----PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
            +      V+            +K   L+   + T   AKK GL D +   ++V      
Sbjct: 414 IWELVRMRVAARMKTGTAPVNTEKLDELAQKPVITAIGAKKAGLADTLLYIDQVPAYALK 473

Query: 240 LGVDQSIRK--IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
              D        + W P     F +  N      L +    +     + + 
Sbjct: 474 TFFDIDAPYAGFRTWAPSNTKIFDESWNHRAKVALLNINGTIDSRMEESVL 524


>gi|149203059|ref|ZP_01880030.1| peptidase S49 [Roseovarius sp. TM1035]
 gi|149143605|gb|EDM31641.1| peptidase S49 [Roseovarius sp. TM1035]
          Length = 262

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 109/257 (42%), Gaps = 19/257 (7%)

Query: 36  PHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           P VA I + G I          + +   IE+        A+ + ++SPGGS      I  
Sbjct: 9   PTVAVIRLAGMIGGGPRAALSDEAIGPVIEKAFARGKPVAVALVINSPGGSPVQSSLIAA 68

Query: 89  AIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
            I+++   K  PV   V ++AAS GY ++ A++ I    +S++GSIGV+        FL 
Sbjct: 69  RIRRLAEEKKIPVHAFVEDVAASGGYWLAVAADDIWVDASSVLGSIGVISAGFGANEFLA 128

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           + G+  +   +   K+   PF    P+ V  ++ +++  +  F+  V   R         
Sbjct: 129 RQGIERRIYTAGKSKSTLDPFMPEKPEDVTRLKSILEDIHAAFITHVKSRRGARLRDDPD 188

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           L  G  W G+ + ++GL D +         L  L  D+   ++  +   +  +       
Sbjct: 189 LFTGEFWLGSLSVELGLADGIAHL---LPKLKELYGDK--VQLARYGRKRGIFPRF---- 239

Query: 267 SISSLLEDTIPLMKQTK 283
             +++ ED + ++++  
Sbjct: 240 -GAAIAEDALSVVEERA 255


>gi|323963686|gb|EGB59201.1| peptidase S49 [Escherichia coli M863]
          Length = 439

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVAGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295


>gi|299469968|emb|CBN79145.1| signal peptide peptidase [Ectocarpus siliculosus]
          Length = 915

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 107/226 (47%), Gaps = 15/226 (6%)

Query: 33  DNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSPGGS 79
                +A +  +G I +S                 +    I  D S   ++V +SSPGG 
Sbjct: 460 KGDRTIAVLNAQGAIVNSAAPSPGGAINLVISNFRDMASTIIADKSIDGVVVRVSSPGGD 519

Query: 80  AYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
           A A + ++R +++++   K V+  V ++AAS GY I+     IV  E S+ GSIGV+   
Sbjct: 520 ASASDLMWREVRRLRESGKVVVASVADVAASGGYYIAMGCERIVCDELSITGSIGVVSAL 579

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             +   L+K+G++ + +         S  S    +          +SY+ FV   ++SR 
Sbjct: 580 LKIGELLEKIGITSELISKGKYAELFSARS-FTAEEDAYFGRGAMASYNDFVGKAAKSRR 638

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           +P +     + GR+WTGAEAK++GL+D +GG ++  +    +   +
Sbjct: 639 MPLEDMQRRAQGRVWTGAEAKELGLVDDLGGLDKAIEICRDMVDLK 684



 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 79/229 (34%), Gaps = 5/229 (2%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAG 111
           L++ ++  + D    A+++    P  S  A   + RA+       KP+            
Sbjct: 215 LVKTLKTAAHDPRIKAVVIDFDGPALSMAATMEVRRAMDYFTQSGKPLWGFTESSVDLTL 274

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE--PSPFSE 169
             +       +A E +    IG   +  + +  L+  GV     +    K          
Sbjct: 275 LCLMGGCTRRIATEEAYCNVIGFSSEAQFFRKALENFGVEPAVKRIGEFKTFGDAYSRDS 334

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLIDVVG 228
           ++    ++  +++++   +   L++ S      +   L D          K+ GL+D V 
Sbjct: 335 MSAAQREVSTNLLETVSGFKTGLLARSSGKSVAEVEALYDNDTPLDVKMLKEFGLLDDVY 394

Query: 229 GQEEVWQSL-YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
            Q+++ + L   +  ++     +     KN     L   S   +++  +
Sbjct: 395 YQDQMLKLLTREMASNKRKLMSRARRDVKNGGKLKLGVQSPKMIVDAPL 443


>gi|222112373|ref|YP_002554637.1| peptidase s49 [Acidovorax ebreus TPSY]
 gi|221731817|gb|ACM34637.1| peptidase S49 [Acidovorax ebreus TPSY]
          Length = 441

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 15/252 (5%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE------------ 48
           ++ +L     R  +  ++       +           VA I I G +             
Sbjct: 23  LDVILSVFGARIGLTDMLVPADYAPTTRPLSPATG-KVAVIPIHGTLVRRTSGLEAVSGL 81

Query: 49  -DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
                +  +++         A+++ + SPGG +     +   I+     KPV    ++MA
Sbjct: 82  ASYTSIAVQLDAALASPEVAAILLDVDSPGGESGGVFDLADRIRSASRIKPVWAVANDMA 141

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
            SA Y +  A++ +  A T  VGSIGV+  +        K GV   +V +   K + +P 
Sbjct: 142 FSAAYALVSAASRVFVARTGGVGSIGVIAMHIDQSVKDAKDGVRYTAVFAGERKNDLNPH 201

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
             ++ +A  +++  VD  Y  FV  V+  R +  D       G  + G +A   GL D V
Sbjct: 202 EPISGEAHAVLKAEVDRVYDLFVETVARHRGLDADAVRATEAGLFF-GPDAVGAGLADAV 260

Query: 228 GGQEEVWQSLYA 239
           GG ++    L  
Sbjct: 261 GGFDDALSQLTQ 272


>gi|163792424|ref|ZP_02186401.1| proteinase [alpha proteobacterium BAL199]
 gi|159182129|gb|EDP66638.1| proteinase [alpha proteobacterium BAL199]
          Length = 287

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 109/268 (40%), Gaps = 14/268 (5%)

Query: 36  PHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
           P V+ + +RG I +            L   +E   R  S TA+ + ++SPGGS    E I
Sbjct: 16  PIVSVVPLRGVIGNLGPMNRGLTIDALAPLLEAAFRPRSVTAVALVVNSPGGSPVQSELI 75

Query: 87  FRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
              I+ +  +  KPV+  V ++AAS GY ++CA++ +    TS++GSI V+      +  
Sbjct: 76  AGRIRDLAAECDKPVVAFVEDVAASGGYWLACAADEVRVTGTSIIGSIEVISSGFGFQEA 135

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--PYD 202
           + KLG+  +   +   KA   PF    P  V  ++ +    +  F+  V   R      D
Sbjct: 136 IGKLGIERRVHTAGSRKALLDPFQSERPDDVAHLKAIQAEMHERFISWVRSRRGDLLKVD 195

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               L +G+ WTGA    +GL D  G      +  Y       + K K     +      
Sbjct: 196 DEPELLEGKFWTGARGVALGLADGEGELRRTLRERYGARTRFRVLKRKQGLARRFGLAQS 255

Query: 263 LKNLSISSLLED-TIPLMKQTKVQGLWA 289
               +           L+   + + LW+
Sbjct: 256 EWGSAGELPFAGWADGLIAAVEERALWS 283


>gi|309797023|ref|ZP_07691422.1| putative signal peptide peptidase SppA [Escherichia coli MS 145-7]
 gi|308119306|gb|EFO56568.1| putative signal peptide peptidase SppA [Escherichia coli MS 145-7]
          Length = 426

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 67  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPIVDGILLDMDTPGGMVAG 126

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 246

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 282


>gi|218694224|ref|YP_002401891.1| Minor capsid protein C from bacteriophage origin [Escherichia coli
           55989]
 gi|218350956|emb|CAU96660.1| Minor capsid protein C from bacteriophage origin [Escherichia coli
           55989]
          Length = 484

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 125 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPIVDGILLDMDTPGGMVAG 184

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 185 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 244

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 245 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 304

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 305 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 340


>gi|91214231|ref|NP_918994.2| prohead protease ClpP [Burkholderia phage BcepNazgul]
 gi|88604924|gb|AAQ63361.2| prohead protease ClpP [Burkholderia phage BcepNazgul]
          Length = 434

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 108/264 (40%), Gaps = 13/264 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQI-----------EDSQELIERIERISRDDSATALIV 71
              +  +     S  +A I ++G +                +  ++     DD    +I+
Sbjct: 62  FQSAADNKPFAFSNGLAIIPLQGTMINRFNYSFGYVTGYNFVRAQLNAALADDDVEGIIL 121

Query: 72  SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
            ++S GG A     +   I   ++ KP++  +     SA Y I+ A+  +V+  +   GS
Sbjct: 122 DVNSYGGEAAGCFELADDIYAARDEKPIMAVIDSNCYSAAYAIASAATKVVSTPSGGAGS 181

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IGV+  +  +   LD +G+ I  + +   K + +P+  ++ +    +Q  V++SY  FV 
Sbjct: 182 IGVVAMHVDMSEMLDDMGIKITFIHAGDHKVDGNPYEALSKEVKASIQADVNASYDEFVS 241

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY-ALGVDQSIRKIK 250
           LV+ +R +   K    +  + +   +A  +GLID V    +   + +  L    S  ++ 
Sbjct: 242 LVARNRGMDSQKVRD-TQAQTYRADDALNLGLIDAVAKPVDAVAAFFNELSGSTSETEVH 300

Query: 251 DWNPPKNYWFCDLKNLSISSLLED 274
             +         L     +++  D
Sbjct: 301 MESTKMELTEEQLAAERRAAIKAD 324


>gi|17545577|ref|NP_518979.1| bacteriophage-like protein [Ralstonia solanacearum GMI1000]
 gi|17427870|emb|CAD14560.1| probable bacteriophage-related protein [Ralstonia solanacearum
           GMI1000]
          Length = 416

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 14/214 (6%)

Query: 37  HVARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
            +A I I G +                  + E+++    D    A+++ + SPGG +   
Sbjct: 58  QIAVIPIHGTLVRRTVGLEAESGLASYTAIGEQLDAALADPGIAAILLDVDSPGGESGGV 117

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
             +   I+     KPV    ++MA SA Y ++CA++ +  + T  VGSIGV+  +     
Sbjct: 118 FDLADRIRVAAAIKPVWAAANDMAFSAAYALACAASRVFVSRTGGVGSIGVIAMHVDQSV 177

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
              K GV   +V +   K + +P   +  +A   +Q  V   Y  FV  V   R +  + 
Sbjct: 178 KDAKDGVRYTAVFAGARKNDLNPHEPITDEAQAQLQAEVSRIYRLFVATVGSYRGLSAEA 237

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
                 G  + G +A   GL D VG  ++    L
Sbjct: 238 VTATEAGLFF-GQDAVAAGLADAVGTFDDALAQL 270


>gi|15801354|ref|NP_287371.1| putative capsid protein of prophage CP-933X [Escherichia coli
           O157:H7 EDL933]
 gi|15830887|ref|NP_309660.1| minor capsid protein [Escherichia coli O157:H7 str. Sakai]
 gi|15831430|ref|NP_310203.1| minor capsid protein precursor [Escherichia coli O157:H7 str.
           Sakai]
 gi|168749764|ref|ZP_02774786.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4113]
 gi|168752425|ref|ZP_02777447.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4113]
 gi|168756502|ref|ZP_02781509.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4401]
 gi|168758740|ref|ZP_02783747.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4401]
 gi|168762579|ref|ZP_02787586.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4501]
 gi|168764760|ref|ZP_02789767.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4501]
 gi|168771031|ref|ZP_02796038.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4486]
 gi|168771214|ref|ZP_02796221.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4486]
 gi|168776026|ref|ZP_02801033.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196]
 gi|168777928|ref|ZP_02802935.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196]
 gi|168778011|ref|ZP_02803018.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196]
 gi|168778058|ref|ZP_02803065.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196]
 gi|168782498|ref|ZP_02807505.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4076]
 gi|168784221|ref|ZP_02809228.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4076]
 gi|168784369|ref|ZP_02809376.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4076]
 gi|168787638|ref|ZP_02812645.1| minor capsid protein C [Escherichia coli O157:H7 str. EC869]
 gi|168790271|ref|ZP_02815278.1| minor capsid protein C [Escherichia coli O157:H7 str. EC869]
 gi|168800423|ref|ZP_02825430.1| minor capsid protein C [Escherichia coli O157:H7 str. EC508]
 gi|168802662|ref|ZP_02827669.1| minor capsid protein C [Escherichia coli O157:H7 str. EC508]
 gi|195938793|ref|ZP_03084175.1| putative minor capsid protein precursor [Escherichia coli O157:H7
           str. EC4024]
 gi|195939967|ref|ZP_03085349.1| putative minor capsid protein precursor [Escherichia coli O157:H7
           str. EC4024]
 gi|208807522|ref|ZP_03249859.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4206]
 gi|208810835|ref|ZP_03252668.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4206]
 gi|208814915|ref|ZP_03256094.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4045]
 gi|208816407|ref|ZP_03257586.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4045]
 gi|208821699|ref|ZP_03262019.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4042]
 gi|208822514|ref|ZP_03262833.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4042]
 gi|209398131|ref|YP_002270077.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4115]
 gi|209399799|ref|YP_002270223.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4115]
 gi|217328033|ref|ZP_03444115.1| minor capsid protein C [Escherichia coli O157:H7 str. TW14588]
 gi|217329770|ref|ZP_03445847.1| minor capsid protein C [Escherichia coli O157:H7 str. TW14588]
 gi|254792619|ref|YP_003077456.1| putative capsid protein of prophage CP-933X [Escherichia coli
           O157:H7 str. TW14359]
 gi|254792758|ref|YP_003077595.1| putative capsid protein of prophage CP-933X [Escherichia coli
           O157:H7 str. TW14359]
 gi|260855340|ref|YP_003229231.1| putative capsid protein/prohead protease [Escherichia coli O26:H11
           str. 11368]
 gi|261227262|ref|ZP_05941543.1| putative capsid protein of prophage CP-933X [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261258730|ref|ZP_05951263.1| putative capsid protein/prohead protease [Escherichia coli O157:H7
           str. FRIK966]
 gi|12514814|gb|AAG55983.1|AE005330_15 putative capsid protein of prophage CP-933X [Escherichia coli
           O157:H7 str. EDL933]
 gi|13361097|dbj|BAB35056.1| minor capsid protein [Escherichia coli O157:H7 str. Sakai]
 gi|13361642|dbj|BAB35599.1| putative minor capsid protein precursor [Escherichia coli O157:H7
           str. Sakai]
 gi|187766859|gb|EDU30703.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196]
 gi|187766895|gb|EDU30739.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196]
 gi|187766931|gb|EDU30775.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196]
 gi|187768547|gb|EDU32391.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196]
 gi|188013730|gb|EDU51852.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4113]
 gi|188016014|gb|EDU54136.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4113]
 gi|188998454|gb|EDU67454.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4076]
 gi|188998583|gb|EDU67569.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4076]
 gi|189000028|gb|EDU69014.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4076]
 gi|189354482|gb|EDU72901.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4401]
 gi|189356384|gb|EDU74803.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4401]
 gi|189359977|gb|EDU78396.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4486]
 gi|189360133|gb|EDU78552.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4486]
 gi|189365302|gb|EDU83718.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4501]
 gi|189367179|gb|EDU85595.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4501]
 gi|189370253|gb|EDU88669.1| minor capsid protein C [Escherichia coli O157:H7 str. EC869]
 gi|189372400|gb|EDU90816.1| minor capsid protein C [Escherichia coli O157:H7 str. EC869]
 gi|189375403|gb|EDU93819.1| minor capsid protein C [Escherichia coli O157:H7 str. EC508]
 gi|189377239|gb|EDU95655.1| minor capsid protein C [Escherichia coli O157:H7 str. EC508]
 gi|208724341|gb|EDZ74049.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4206]
 gi|208727323|gb|EDZ76924.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4206]
 gi|208731563|gb|EDZ80251.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4045]
 gi|208733055|gb|EDZ81743.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4045]
 gi|208737999|gb|EDZ85682.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4042]
 gi|208741822|gb|EDZ89504.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4042]
 gi|209159531|gb|ACI36964.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4115]
 gi|209161199|gb|ACI38632.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4115]
 gi|217317189|gb|EEC25620.1| minor capsid protein C [Escherichia coli O157:H7 str. TW14588]
 gi|217318460|gb|EEC26886.1| minor capsid protein C [Escherichia coli O157:H7 str. TW14588]
 gi|254592019|gb|ACT71380.1| putative capsid protein of prophage CP-933X [Escherichia coli
           O157:H7 str. TW14359]
 gi|254592158|gb|ACT71519.1| putative capsid protein of prophage CP-933X [Escherichia coli
           O157:H7 str. TW14359]
 gi|257753989|dbj|BAI25491.1| putative capsid protein/prohead protease [Escherichia coli O26:H11
           str. 11368]
 gi|320187947|gb|EFW62615.1| Head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC1212]
 gi|320191964|gb|EFW66610.1| Head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC1212]
 gi|320638195|gb|EFX07937.1| putative capsid protein/prohead protease [Escherichia coli O157:H7
           str. G5101]
 gi|326338655|gb|EGD62480.1| Head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           1125]
 gi|326348089|gb|EGD71798.1| Head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           1044]
          Length = 439

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPGDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + +   +P  + 
Sbjct: 318 VSATASQADVTGVVPATEG 336


>gi|91224322|ref|ZP_01259584.1| Putative capsid protein of prophage [Vibrio alginolyticus 12G01]
 gi|91190664|gb|EAS76931.1| Putative capsid protein of prophage [Vibrio alginolyticus 12G01]
          Length = 450

 Score =  100 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 98/236 (41%), Gaps = 14/236 (5%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDD 64
           V         S+     S  +A I I G              +     ++ R+     D 
Sbjct: 56  VASGFSRTRSSNRSYQVSQGIAIIPIDGSLVHKYGHIKPYSGMTGYDGIMHRLREAVADP 115

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
              A+++ +++PGG       +   I +++  KP+ +  ++M  SAG +I+ A +  +  
Sbjct: 116 EVKAILLDMNTPGGMVAGCFDLADKIAEMRKIKPIWSLGYDMHCSAGQMIASACSRRLIT 175

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
           +T + GS+GV+  +  ++  LD+ GV I  V +   KA+ +P+  +  +  +  Q   +S
Sbjct: 176 QTGIAGSVGVIMAHTNIEKMLDQQGVEITLVTAGDHKADGNPYQSLPKEVREKWQSEAES 235

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +   F    +E   +     L  ++ +++ G  A  VG  + V    +  Q +   
Sbjct: 236 TRQMFAGKAAEYMGVDIKTILS-TEAQVYEGQAAVDVGFANEVVNGLDAVQIMAEQ 290


>gi|149913315|ref|ZP_01901848.1| Peptidase U7 [Roseobacter sp. AzwK-3b]
 gi|149812435|gb|EDM72264.1| Peptidase U7 [Roseobacter sp. AzwK-3b]
          Length = 474

 Score =  100 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 14/209 (6%)

Query: 36  PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A I I G +                + +  +IE  +RD S  A+ + + S GG    
Sbjct: 80  NGIAVIEISGVLIHRGGWIGQSSGQTSYEGIAAQIEAAARDPSVRAVALEIDSFGGEVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
              +   ++ ++  KPV   V E A SAGY ++  ++ I+   T  VGSIGV+  +  + 
Sbjct: 140 VFDLADRLRALRRNKPVWAFVAEHAFSAGYALASQADRILLPRTGAVGSIGVVVMHADLS 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LD+ GV +  + S   K + +P+  +       +Q  +D     F   V+  R+   +
Sbjct: 200 SQLDQNGVRVTLIHSGQHKVDGNPYEPLPESVRDDIQREIDVLRFLFAETVAAGRSGRLN 259

Query: 203 KTLVL-SDGRIWTGAEAKKVGLIDVVGGQ 230
           +   L ++   + GA+A   GL D V   
Sbjct: 260 QDAALATEAATFRGADAVSAGLADEVIDL 288


>gi|288560933|ref|YP_003424419.1| peptidase S49 family [Methanobrevibacter ruminantium M1]
 gi|288543643|gb|ADC47527.1| peptidase S49 family [Methanobrevibacter ruminantium M1]
          Length = 285

 Score =  100 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 104/242 (42%), Gaps = 14/242 (5%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQ----------ELIERIERISRDDSATALIVSLSSP 76
             S++  ++  +A I I   I              E+   +     +     +++ + S 
Sbjct: 30  PFSNLAVDNDEIAVITISDTITYGDNSTSAHTSKKEIESELNDAYSNPKIKGIVLDIDSG 89

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GGS  A + I   I+K  + KP+++ + +      Y I+ A++ I A+ +S +G IG+ +
Sbjct: 90  GGSLVASDEISDLIKK--SPKPIVSYIGDKGFDEAYQIASATDYIFASSSSSLGGIGLSY 147

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                +   +K+            K + +   + +   +   Q +VD  Y  F++ ++E+
Sbjct: 148 IN-TDRYSDEKVTGVFNEKYLKNNKTKSNSKVK-SANDLANAQKMVDQDYTLFIKKIAEN 205

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           RN+  D    L+ G+ + G EAKK+GLID +G + +  +    L    +   I    P K
Sbjct: 206 RNLTADYVAELAHGKKYNGNEAKKLGLIDEIGSKSQSIEKAAKLSNATNYTVITYPEPQK 265

Query: 257 NY 258
             
Sbjct: 266 KL 267


>gi|207725418|ref|YP_002255814.1| bacteriophage-related protein [Ralstonia solanacearum MolK2]
 gi|206590654|emb|CAQ37616.1| bacteriophage-related protein [Ralstonia solanacearum MolK2]
          Length = 416

 Score =  100 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 90/214 (42%), Gaps = 14/214 (6%)

Query: 37  HVARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
            +A I I G +                  + ++++    D    A+++ + SPGG +   
Sbjct: 58  QIAVIPIHGTLVRRTVGLEAESGLASYTAIGDQLDAALADPGVAAILLDVDSPGGESGGA 117

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
             +   I+     KPV    ++MA SA Y ++ A++ +  + T  VGSIGV+  +     
Sbjct: 118 FDLADRIRAAAAVKPVWAVANDMAFSAAYALASAASRLFVSRTGGVGSIGVIAMHVDQSV 177

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
              + G+   +V +   K + +P   ++  A   +Q  VD  Y  FV  V+ +R I  + 
Sbjct: 178 KDAQDGIRYTAVFAGARKNDLNPHEPISDAAQAQLQAEVDRLYGLFVATVANNRGIAAEA 237

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
                 G  + G +A   GL D VG  ++    L
Sbjct: 238 VTATEAGLFF-GQDAVAAGLADDVGTFDDALAQL 270


>gi|94970200|ref|YP_592248.1| peptidase S49 [Candidatus Koribacter versatilis Ellin345]
 gi|94552250|gb|ABF42174.1| peptidase S49 [Candidatus Koribacter versatilis Ellin345]
          Length = 781

 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 16/227 (7%)

Query: 29  SHVEDNSPHVARIAIRGQI---------------EDSQELIERIERISRDDSATALIVSL 73
                 S  V  I I G I                    L +       +   +A++  +
Sbjct: 71  KASPVTSGAVMVIPIYGVIGPKASQFERASSGGGTGIDALTQTFRSALSNPDISAIVFDV 130

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
            SPGGS +    +   I   + +K ++ +V   AASA Y ++ ++  +V   +   GSIG
Sbjct: 131 DSPGGSVFGIAELADEIYAGRGKKKIVAQVAPRAASAAYWLAASAGEVVVTPSGQAGSIG 190

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V   +  +   LD  GV    + +   K E +    ++ +A   MQ++VD  Y  FV+ V
Sbjct: 191 VFVAHEDLSKALDMQGVKETLISAGKYKVEGASSQPLSDEARAAMQNMVDQYYGAFVQGV 250

Query: 194 SESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
           +  R +          +GR+ +  +A ++G++D +   ++   +L  
Sbjct: 251 ARGRAVTAATVRNSFGEGRVVSAQDALQLGMVDRIATLDQTIAALLG 297


>gi|209919254|ref|YP_002293338.1| putative phage capsid structural protein [Escherichia coli SE11]
 gi|209912513|dbj|BAG77587.1| putative phage capsid structural protein [Escherichia coli SE11]
          Length = 439

 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPGDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +   + 
Sbjct: 318 VSATASQADVTDVVQATEG 336


>gi|209917788|ref|YP_002291872.1| putative phage minor capsid protein [Escherichia coli SE11]
 gi|209911047|dbj|BAG76121.1| putative phage minor capsid protein [Escherichia coli SE11]
 gi|320201852|gb|EFW76428.1| Head-tail preconnector protein GP5 [Escherichia coli EC4100B]
 gi|323965007|gb|EGB60470.1| peptidase S49 [Escherichia coli M863]
          Length = 439

 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPGDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +   + 
Sbjct: 318 VSATASQADVTDVVQATEG 336


>gi|153834991|ref|ZP_01987658.1| minor capsid protein C (GPC) [Vibrio harveyi HY01]
 gi|148868565|gb|EDL67658.1| minor capsid protein C (GPC) [Vibrio harveyi HY01]
          Length = 450

 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 98/236 (41%), Gaps = 14/236 (5%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDD 64
           V         S+     S  +A I I G              +     ++ R+     D 
Sbjct: 56  VASGFSRTRSSNRSYQVSQGIAIIPIDGSLVHKYGHIKPYSGMTGYDGIMHRLREAVADP 115

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
              A+++ +++PGG       +   I +++  KP+ +  ++M  SAG +I+ A +  +  
Sbjct: 116 EVKAILLDMNTPGGMVAGCFDLADKIAEMRKIKPIWSLGYDMHCSAGQMIASACSRRLIT 175

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
           +T + GS+GV+  +  ++  LD+ GV I  V +   KA+ +P+  +  +  +  Q   +S
Sbjct: 176 QTGIAGSVGVIMAHTNIEKMLDQQGVEITLVTAGDHKADGNPYQSLPKEVREKWQSEAES 235

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +   F    +E   +     L  ++ +++ G  A  VG  + V    +  Q +   
Sbjct: 236 TRQMFAGKAAEYMGVDIKTILS-TEAQVYEGQAAVDVGFANEVVNGLDAVQIMAEQ 290


>gi|213620929|ref|ZP_03373712.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
          Length = 412

 Score = 99.7 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +       S+ E  +     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90
                               +++  I +   D + T +++ L +  G+       I +A+
Sbjct: 79  ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  VS +R I   +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             + DG       T   A    L+D +    +V ++L     
Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300



 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 9/67 (13%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +A I   G I D +E            +I     D    A+++ ++SPGGS
Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378

Query: 80  AYAGEAI 86
             A E I
Sbjct: 379 VNASEVI 385


>gi|320660180|gb|EFX27694.1| putative phage minor capsid protein [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 439

 Score = 99.7 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPGDVRETLQSRMDATRRIFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G EA   GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +   + 
Sbjct: 318 VSATASQADVTDVVQATEG 336


>gi|309704860|emb|CBJ04212.1| putative minor capsid protein [Escherichia coli ETEC H10407]
          Length = 439

 Score = 99.7 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPGDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G EA   GL D +    +    +  
Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295


>gi|152981533|ref|YP_001354400.1| phage related peptidase [Janthinobacterium sp. Marseille]
 gi|151281610|gb|ABR90020.1| phage related peptidase [Janthinobacterium sp. Marseille]
          Length = 406

 Score = 99.7 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 14/215 (6%)

Query: 38  VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           +A + I G              +   QEL   ++    D +  A+++ + S GG +    
Sbjct: 58  IAVLPIYGTLVRRTVGLEAESGMASYQELATMLDTAVADPNVAAILLDIDSAGGESGGVF 117

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +   +     RKPV    ++MA SA Y I  A++  +   T  VGSIGV+  +      
Sbjct: 118 DLADRVAAAAKRKPVWALANDMAFSAAYAIGSAASRFIVTRTGGVGSIGVIAMHADQSVK 177

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
             K GV   +V +   K + +P   ++ +A   +++ V+  Y  FV  V+ +R +  D  
Sbjct: 178 DAKDGVRYTTVFAGARKNDLNPHEPISDEAHAFLKNEVERVYGLFVETVARNRGVSADAV 237

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
              ++  I+ GA+A   GL D VG  ++V      
Sbjct: 238 RA-TEASIYYGADAVAAGLADAVGTFDDVLAEFTE 271


>gi|110668977|ref|YP_658788.1| protease IV; endopeptidase IV; signal peptide peptidase
           [Haloquadratum walsbyi DSM 16790]
 gi|109626724|emb|CAJ53191.1| Protease IV; endopeptidase IV; probable signal peptide peptidase
           [Haloquadratum walsbyi DSM 16790]
          Length = 305

 Score = 99.3 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 19/234 (8%)

Query: 30  HVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
               +   V+ I + G I  S    L E +     +DS  ++++ + S GG+    E ++
Sbjct: 39  QSAQSEGTVSVITVSGVITGSKVDTLSEDLREARINDSIKSVVLKVDSGGGAVAPSERLY 98

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             + +     PV+  V  ++AS  Y     +N      +  VGS+GV+            
Sbjct: 99  LEVLRTAKEIPVVASVQGVSASGAYYGILPANETFMLSSGQVGSVGVIGAGGTAPVP--- 155

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLV 206
                + +++ P KA          +        V+S    FV  V E R          
Sbjct: 156 ----DRIIRTGPDKA-----QPTTEQRR----QQVESLKRQFVNRVVEHRGENITLSREE 202

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
           +++ + + G  A + GLID +G           +   +     +   P     F
Sbjct: 203 IANAKTYLGPRAAENGLIDQLGTLSVAIDHAAEMAGMEDYDIARKEPPRGGLIF 256


>gi|117926027|ref|YP_866644.1| serine peptidase [Magnetococcus sp. MC-1]
 gi|117609783|gb|ABK45238.1| protein C, Serine peptidase, MEROPS family S49 [Magnetococcus sp.
           MC-1]
          Length = 410

 Score = 99.3 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 91/231 (39%), Gaps = 15/231 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLS 74
           SS +      +A + I G +                  + E++   + D +  A+++ + 
Sbjct: 53  SSDLMVTPNGIAIVPIHGTLVKRVGAVEAASGLMSYASIEEKLLDAATDPAVRAILMDID 112

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGG       +   IQ+    KP+     +  ++A  + S A + I+  +T+ VGSIGV
Sbjct: 113 SPGGEVGGVFDLAAMIQEAGQGKPIWALADDAFSAAYLIASQA-HRIIVPQTAGVGSIGV 171

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +  +        K G S  +V +   K + S  + ++  A   +Q  VD  Y  F  +V+
Sbjct: 172 IAAHVDESEKDAKEGRSYTTVFAGAHKNDFSSHAPLSDAARFNLQQEVDRLYGMFTGMVA 231

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
             RNI          G  + G  A K GL D VG   +    L  L     
Sbjct: 232 SGRNISETAVRATEAGLFF-GDNAVKAGLADHVGTIRDALAGLTTLIESPK 281


>gi|126458778|ref|YP_001055056.1| peptidase S49 [Pyrobaculum calidifontis JCM 11548]
 gi|126248499|gb|ABO07590.1| peptidase S49 [Pyrobaculum calidifontis JCM 11548]
          Length = 612

 Score = 99.3 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 87/231 (37%), Gaps = 15/231 (6%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYA 82
            S     +     +  + +   I D +   L++ ++R+  DD    +++ ++SPGG+  A
Sbjct: 75  VSKLEAKKAAEKEIVVVPVDFAIYDYEVDFLVKYVKRLEFDDRVAGVVLLINSPGGAVGA 134

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            E ++  I  +   K  +     + AS  Y  + A+  I A  +S VGS+GV+       
Sbjct: 135 TERLYSTIAGLNKTKYAVIAG--LGASGAYYTAVAAEKIYATPSSWVGSVGVIALIAPED 192

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
              +          + P K        +           V+ +   FV  V + R     
Sbjct: 193 YLAEVPDW---IYTTGPWKYYGKDLLALYDD--------VEKTRENFVNAVLKGRGDRLK 241

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
               +    I+   EA ++GLID +GG  +  + +      ++   +  + 
Sbjct: 242 DLKAVETAEIFRADEALRIGLIDAIGGLWDAVRDMAKELGLKNYTVVDIYE 292


>gi|170020107|ref|YP_001725061.1| peptidase S49 [Escherichia coli ATCC 8739]
 gi|169755035|gb|ACA77734.1| peptidase S49 [Escherichia coli ATCC 8739]
          Length = 439

 Score = 99.3 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 80  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS    +   
Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             L  ++  +++G E    GL D +    +    +    +D    ++      K      
Sbjct: 260 AVLD-TEAAVYSGQEVIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317

Query: 263 LKNLSISSLLEDTIPLMKQ 281
           +   +  + + D +P  + 
Sbjct: 318 VSATASQADVTDVVPATEG 336


>gi|83648314|ref|YP_436749.1| periplasmic serine protease (ClpP class) [Hahella chejuensis KCTC
           2396]
 gi|83636357|gb|ABC32324.1| Periplasmic serine protease (ClpP class) [Hahella chejuensis KCTC
           2396]
          Length = 407

 Score = 99.3 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 114/259 (44%), Gaps = 15/259 (5%)

Query: 32  EDNSPHVARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGG 78
           +D++P +A I + G +                 ++ + ++    D     +++ + SPGG
Sbjct: 51  KDSAPGIAVIPVHGSLVRRTLGLEAASGLSSYGQIAQSLDAAVADPQVAGILLDIDSPGG 110

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            A     +   I+ V  RKPV    ++ A SA Y I+ ++  +  ++T+ VGS+GV+  +
Sbjct: 111 EAGGVFELAERIRAVNARKPVWAHANDSAFSAAYAIAASAGRLSVSQTAGVGSVGVIALH 170

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                   + G++  ++ +   K + SP + ++P+A   +Q  VD  Y  FV  V++ RN
Sbjct: 171 VDQSAKDARDGLAYTALYAGEHKNDLSPHAPLSPEAASSLQAEVDRLYRIFVSQVAQMRN 230

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           +  D        R++ G EA  +GL D V   ++           Q     ++      Y
Sbjct: 231 LSEDDVRNTK-ARLFFGEEAVSLGLADAVSSFDQTLSEFTDALRRQGALTPRERRNAHAY 289

Query: 259 WFCDLKNLSISSLLEDTIP 277
                K L +S +L + +P
Sbjct: 290 P-RSSKELIVSEVLPEALP 307


>gi|159184399|ref|NP_353659.2| proteinase sohB [Agrobacterium tumefaciens str. C58]
 gi|159139712|gb|AAK86444.2| proteinase sohB [Agrobacterium tumefaciens str. C58]
          Length = 260

 Score = 98.9 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 103/246 (41%), Gaps = 5/246 (2%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEM 106
           +       +E+      A A+ +SL+SPGGS      I+  I+++  +  K V+  V ++
Sbjct: 12  NLASYAPLLEKAFAVKDAPAVAISLNSPGGSPVQARMIYNRIRQLAEEKDKKVLIFVEDV 71

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           AAS GY+I+ A + I+A  TS+VGSIGV+         L K+GV  +   +   K    P
Sbjct: 72  AASGGYMIALAGDEIIADPTSIVGSIGVVSGGFGFPEMLRKIGVERRVYTAGENKVILDP 131

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
           F       +  ++ +    ++ F+ +V   R         L  G  WTG     +GLID 
Sbjct: 132 FQPEKEGDIDYLKSLQVEIHNVFIDMVKMRRGSKLKGDDALFSGLFWTGMRGLDLGLIDG 191

Query: 227 VGGQEEVWQSLYA-LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           +G   EV +  Y      Q I   +     K         L+   L    +  + +   +
Sbjct: 192 LGDMREVLRRRYGTKVKLQLISGGRSLFGKKVPGVNMALGLNAERLAAGAVSGLAEVAEE 251

Query: 286 GLWAVW 291
              A+W
Sbjct: 252 --KALW 255


>gi|304321517|ref|YP_003855160.1| peptidase S49 [Parvularcula bermudensis HTCC2503]
 gi|303300419|gb|ADM10018.1| peptidase S49 [Parvularcula bermudensis HTCC2503]
          Length = 280

 Score = 98.5 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 118/273 (43%), Gaps = 21/273 (7%)

Query: 31  VEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAY 81
             +  P +  + + G I          +   +   +E+  +     A+++S++SPGGS  
Sbjct: 12  TPEPPPMIHIVPMEGVIAAAGRSSRSLNLSAVEGALEKAFKTGEPRAVLLSINSPGGSPV 71

Query: 82  AGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
               I + ++ +  +++ PVI  + ++ AS GY+++ A + I A   +LVGSIGV+    
Sbjct: 72  QSRMILQKVRDLSVEHKVPVIAHIQDVGASGGYMLALAGDEIYADPFALVGSIGVIAGGF 131

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            +   + +LG+  +   +   K++  PF   +P+ V  ++ ++D S+  F+ LV   R  
Sbjct: 132 GLHEAIGRLGIERRVYTAGENKSQLDPFRPEDPRDVAHLKGILDKSHALFIDLVKTRRGD 191

Query: 200 PYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
                  +   G  W   EA+ +GLID V  ++ + +  +   V      +      ++ 
Sbjct: 192 RLKGEDKIVFTGDFWIADEAQALGLIDGVEDRDALLKRRFGDRVQSRSFDV----DKRSL 247

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
               L      +   + +    + K     A+W
Sbjct: 248 LSRLLSGTMPGAWRPEAVAAALEDK-----ALW 275


>gi|51245435|ref|YP_065319.1| capsid protein GPC of phage lambda [Desulfotalea psychrophila
           LSv54]
 gi|50876472|emb|CAG36312.1| related to capsid protein GPC of phage lambda [Desulfotalea
           psychrophila LSv54]
          Length = 433

 Score = 98.5 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 97/264 (36%), Gaps = 19/264 (7%)

Query: 30  HVEDNSPHVARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSP 76
              D    VA I + G +                + +   I++   D S   +++ + S 
Sbjct: 66  RSSDEEKRVAIIPVIGSLVARNRGFDDGSGLRSYRTIAHEIDQALADQSILGIVLDIDSY 125

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE--TSLVGSIGV 134
           GG+A     +   I++    KP+   +     SA   I+ A   +  ++   + +GS+G 
Sbjct: 126 GGAAAGCARLAGHIKEAGLVKPIYANIDLNCFSAATWIASACTKVFLSDGLDAGMGSVGC 185

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +  +       +K G    +V     K + SP   ++      MQ  VD   H F   V+
Sbjct: 186 IAIHRDQSVKNEKEGEVYTAVYFGERKNDFSPHQPLSGDLQTKMQAGVDRMGHAFAAAVA 245

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD--- 251
           E+R +     L +  G  + G +A   GL D V    E    L A   ++    + +   
Sbjct: 246 ENRGLDLQAVLKMQAGTFY-GQDAITHGLADGVASLTETVALLGAEAEERERASVHNTTG 304

Query: 252 WNPPKNYWFCDLKNLSISSLLEDT 275
               KN       +  +S+LL + 
Sbjct: 305 LTQAKNRGETMSLSEKLSALLAEE 328


>gi|117926174|ref|YP_866791.1| serine peptidase [Magnetococcus sp. MC-1]
 gi|117609930|gb|ABK45385.1| protein C, Serine peptidase, MEROPS family S49 [Magnetococcus sp.
           MC-1]
          Length = 392

 Score = 98.5 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 91/231 (39%), Gaps = 15/231 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLS 74
           SS +      +A + I G +                  + E++   + D +  A+++ + 
Sbjct: 35  SSDLMVTPNGIAVVPIHGTLVKRAGAIEAASGLMSYASIEEKLLDAATDPAVRAILMDID 94

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGG       +   I +    KP+     +  ++A  + S A + I+  +T+ VGSIGV
Sbjct: 95  SPGGEVGGVFDLAAMISEAGQGKPIWALADDAFSAAYLIASQA-HRIIVPQTAGVGSIGV 153

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +  +        K G S  +V +   K + S  + ++  A   +Q  VD  Y  F  +V+
Sbjct: 154 IAAHVDESEKDAKEGRSYTTVFAGARKNDFSTHAPLSDAARSNLQQEVDRLYGMFTGMVA 213

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
             R +P         G  + G  A K GL D VG   +    L AL     
Sbjct: 214 SGRGMPEAVVRATEAGLFF-GDNAVKAGLADQVGTIRDALAGLTALIESPK 263


>gi|24214911|ref|NP_712392.1| periplasmic serine protease [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24195940|gb|AAN49410.1| periplasmic serine protease [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 579

 Score = 98.5 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 119/262 (45%), Gaps = 17/262 (6%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQI--------------EDSQELIERIERISRDDSATALI 70
                 V      VA + ++G I                   + E ++ + ++ S  A+I
Sbjct: 277 LKNFKLVSQKESVVAVLPLKGNIHHDTIGKGEGKTDGISYYSIKEALKELKKESSVKAVI 336

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + + SPGGSA+  E +++ I K++ +KPV   +  ++AS GY +SC ++ I A+   +VG
Sbjct: 337 LEVDSPGGSAFVSELLYQEILKLQKKKPVYAYIQNISASGGYYLSCGASKIYASPYGIVG 396

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIG +     +K    KLG++   V     +   S +  ++P++ ++M+  +  S   F 
Sbjct: 397 SIGSISIRFDLKNLYSKLGITKDRVGFYKYRDLLSEYGPIHPESKKLMEQEIKESEGLFY 456

Query: 191 RLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           + VS+SR IP          G+++T ++  K  +ID +     + + +      + ++  
Sbjct: 457 KRVSDSRKIPISDLDKRFGQGKVFTSSQFLKERMIDSITDFLSLLEDIKQDLKVEKVQ-- 514

Query: 250 KDWNPPKNYWFCDLKNLSISSL 271
             + P    +   LK+L    L
Sbjct: 515 VRYLPSLFTFQSFLKSLKPGFL 536


>gi|294851553|ref|ZP_06792226.1| protease IV [Brucella sp. NVSL 07-0026]
 gi|294820142|gb|EFG37141.1| protease IV [Brucella sp. NVSL 07-0026]
          Length = 225

 Score = 98.5 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 79/214 (36%), Positives = 131/214 (61%), Gaps = 12/214 (5%)

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           ++K+  +KPV+T+V  +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP +   LD LG
Sbjct: 1   MRKIATKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLSKLLDTLG 60

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           V ++++KSSP+KAEP+ FS  + +A  M++ ++  SY WFV +V E R   +++ L L++
Sbjct: 61  VKVETIKSSPLKAEPNYFSPASEEAKNMIRSMIMDSYDWFVGIVQERRAFTHEQALALAN 120

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           G ++TG +A    LID +GG+ E    L   G+   + ++ +W P  +     L++L I 
Sbjct: 121 GAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPRL-EWKPVGSETGFSLRDLIIH 179

Query: 270 SLL------EDTIPLM-----KQTKVQGLWAVWN 292
           +        ++    +      +  + GL +VW+
Sbjct: 180 AGARLLGLPQEADGAIKEIARDRIFLDGLLSVWH 213


>gi|45657584|ref|YP_001670.1| protease IV [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45600823|gb|AAS70307.1| protease IV [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 579

 Score = 98.5 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 119/262 (45%), Gaps = 17/262 (6%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQI--------------EDSQELIERIERISRDDSATALI 70
                 V      VA + ++G I                   + E ++ + ++ S  A+I
Sbjct: 277 LKNFKLVSQKESVVAVLPLKGNIHHDTIGKGEGKTDGISYYSIKEALKELKKESSVKAVI 336

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + + SPGGSA+  E +++ I K++ +KPV   +  ++AS GY +SC ++ I A+   +VG
Sbjct: 337 LEVDSPGGSAFVSELLYQEILKLQKKKPVYAYIQNISASGGYYLSCGASKIYASPYGIVG 396

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIG +     +K    KLG++   V     +   S +  ++P++ ++M+  +  S   F 
Sbjct: 397 SIGSISIRFDLKNLYSKLGITKDRVGFYKYRDLLSEYGPIHPESKKLMEQEIKESEGLFY 456

Query: 191 RLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           + VS+SR IP          G+++T ++  K  +ID +     + + +      + ++  
Sbjct: 457 KRVSDSRKIPISDLDKRFGQGKVFTSSQFLKERMIDSITDFLSLLEDIKQDLKVEKVQ-- 514

Query: 250 KDWNPPKNYWFCDLKNLSISSL 271
             + P    +   LK+L    L
Sbjct: 515 VRYLPSLFTFQSFLKSLKPGFL 536


>gi|116331019|ref|YP_800737.1| Signal peptide peptidase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116124708|gb|ABJ75979.1| Signal peptide peptidase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 583

 Score = 98.5 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 121/269 (44%), Gaps = 17/269 (6%)

Query: 36  PHVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
           P VA + ++G I                   +   ++ +  + S  A+++ + SPGGSA+
Sbjct: 286 PVVAVLPLKGTIHHDTIGKGEGKTEGISYYSVRNALKELRDESSVKAVVLEVDSPGGSAF 345

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
             E +++ I K++ +KPV   V  ++AS GY +SC ++ I A+   +VGSIG L     +
Sbjct: 346 VSELLYQEILKLQKKKPVYAYVQNVSASGGYYLSCGASKIYASPYGIVGSIGSLSLRLDL 405

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
           K F  KLGV+   V     +   S +  ++P++ ++M+  +  S   F + V+++R IP 
Sbjct: 406 KNFYSKLGVTKDRVGFYKYRDLLSEYGPIHPESRKLMRQEIKESEGLFYKRVADARKIPI 465

Query: 202 DKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                    GR++T +   K  +ID +     + + +      Q +     + P    + 
Sbjct: 466 STLDKRFGQGRVFTSSRFLKEKMIDSITDFLGLLEDIKQELKTQRLE--IRYLPTLFTFQ 523

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
             L++L    L+         +  + L +
Sbjct: 524 NFLRSLKPGFLINRLDGNFASSFPEILQS 552


>gi|299067579|emb|CBJ38781.1| bacteriophage head-tail preconnector protein GP5 [Contains:
           Scaffold protein GP6 (Head protein GP6)] [Ralstonia
           solanacearum CMR15]
          Length = 416

 Score = 98.1 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 89/213 (41%), Gaps = 14/213 (6%)

Query: 38  VARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           +A I I G +                  + ++++    D    A+++ + SPGG +    
Sbjct: 59  IAVIPIHGTLVRRTVGLEAESGLASYTAIGDQLDAALADQGVAAILLDVDSPGGESSGVF 118

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +   I+     KPV    ++MA SA Y ++ A++ +  + T  VGSIGV+  +      
Sbjct: 119 DLADRIRAAAAVKPVWAVANDMAFSAAYALASAASRVFVSRTGGVGSIGVIAMHVDQSVK 178

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
             K G+   +V +   K + +P + +  +A   +Q  V   Y  FV  V+  R +  +  
Sbjct: 179 DAKDGIHYTAVFAGARKNDLNPHAPITDEAQAQLQAEVSRIYGLFVATVASYRGLSVEAV 238

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
                G  + G +A   GL D VG  E+    L
Sbjct: 239 TATEAGLFF-GPDAVTAGLADAVGTFEDALAQL 270


>gi|116328293|ref|YP_798013.1| Signal peptide peptidase (protease IV) [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116121037|gb|ABJ79080.1| Signal peptide peptidase (protease IV) [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 582

 Score = 98.1 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 121/269 (44%), Gaps = 17/269 (6%)

Query: 36  PHVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
           P VA + ++G I                   +   ++ +  + S  A+++ + SPGGSA+
Sbjct: 286 PVVAVLPLKGTIHHDTIGKGEGKTEGISYYSVRNALKELRDESSVKAVVLEVDSPGGSAF 345

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
             E +++ I K++ +KPV   V  ++AS GY +SC ++ I A+   +VGSIG L     +
Sbjct: 346 VSELLYQEILKLQKKKPVYAYVQNVSASGGYYLSCGASKIYASPYGIVGSIGSLSLRLDL 405

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
           K F  KLGV+   V     +   S +  ++P++ ++M+  +  S   F + V+++R IP 
Sbjct: 406 KNFYSKLGVTKDRVGFYKYRDLLSEYGPIHPESRKLMRQEIKESEGLFYKRVADARKIPI 465

Query: 202 DKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                    GR++T +   K  +ID +     + + +      Q +     + P    + 
Sbjct: 466 STLDKRFGQGRVFTSSRFLKEKMIDSITDFLGLLEDIKQELKTQRLE--IRYLPTLFTFQ 523

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
             L++L    L+         +  + L +
Sbjct: 524 NFLRSLKPGFLINRLDGNFASSFPEILQS 552


>gi|304393460|ref|ZP_07375388.1| Na(+)/H(+) antiporter NhaA [Ahrensia sp. R2A130]
 gi|303294467|gb|EFL88839.1| Na(+)/H(+) antiporter NhaA [Ahrensia sp. R2A130]
          Length = 294

 Score = 98.1 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 112/273 (41%), Gaps = 25/273 (9%)

Query: 38  VARIAIRGQIEDSQELIER----------IERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           +  + + G I      + +          ++R      A  + + ++SPGGS      I+
Sbjct: 23  IPVVRLEGAIMSGGSALRQNLNLAGCASRLKRAFEMKEAPCVAIIVNSPGGSPVQSRLIY 82

Query: 88  RAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           + I+ +  ++ K V   V + AAS GY+I+CA + I A  +S++GSIGV+         +
Sbjct: 83  QRIRDLATEHDKKVHVFVEDAAASGGYMIACAGDQITADPSSIIGSIGVVSSGFGFVGAI 142

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           +KLGV  +   +   K+   PF     + ++ ++++    +  F+ LV  SR+    +  
Sbjct: 143 NKLGVERRVHTAGLNKSVLDPFLPEKAQDIKRLKELQLEIHGVFIDLVKASRSDKLVEDK 202

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            +  G  WT   AK +GLID +G      +           +        K        +
Sbjct: 203 SMFTGMFWTAGPAKDMGLIDGIGDLRGTLR------GFYGEKTKLKLVEAKKGLLGRSAS 256

Query: 266 LSISSLLEDTIPLMKQTKV-QGLWA------VW 291
           + IS L    +      ++  GL +      +W
Sbjct: 257 MGISGLGIPVMDANLGHQIADGLLSTAEERALW 289


>gi|294676957|ref|YP_003577572.1| S49 family peptidase [Rhodobacter capsulatus SB 1003]
 gi|294475777|gb|ADE85165.1| peptidase, S49 family [Rhodobacter capsulatus SB 1003]
          Length = 316

 Score = 98.1 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 81/209 (38%), Gaps = 14/209 (6%)

Query: 39  ARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           A I I G +                + +  +++    D +   + + + S GG       
Sbjct: 28  AVIEIAGTLVHRGAWIGQSSGLTSYEGIAAQLQAAVADPAIRGIALDIDSFGGEVAGAFD 87

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           +   I+  + +KPV   V + A SA Y ++  +  I+   T  VGSIGV+  +  +   L
Sbjct: 88  MADRIRAARAQKPVQAFVADHALSAAYALASQAGRIILPRTGAVGSIGVVAMHSDMSGAL 147

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           D+ G+++  + +   K + +P+  +       +   ++     F   V+E R    D + 
Sbjct: 148 DQKGIAVTLIHAGARKVDANPYQPLPETIRARIAGELEDLRQLFAETVAEGRGRRLDTSR 207

Query: 206 VLSD-GRIWTGAEAKKVGLIDVVGGQEEV 233
            L     ++ G  A   GL D V      
Sbjct: 208 ALDTEAAVFRGEAAVFAGLADEVADPVTA 236


>gi|213584071|ref|ZP_03365897.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 310

 Score = 98.1 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +       S+ E  +     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90
                               +++  I +   D + T +++ L +  G+       I +A+
Sbjct: 79  ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ ++    +  V E  +   Y ++  +N I  +    V   G      Y K  LDKL V
Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198

Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204
           S    +    K+   PF   +++P A +     +   +  ++  VS +R I   +     
Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258

Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             + DG       T   A    L+D +    +V ++L     
Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300


>gi|75676773|ref|YP_319194.1| peptidase S49 [Nitrobacter winogradskyi Nb-255]
 gi|74421643|gb|ABA05842.1| peptidase S49 [Nitrobacter winogradskyi Nb-255]
          Length = 292

 Score = 98.1 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/268 (23%), Positives = 109/268 (40%), Gaps = 17/268 (6%)

Query: 38  VARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           V  + + G I              +   +ER      A A+ + ++SPGGS      I+ 
Sbjct: 23  VPVVRLSGVIGAVTPLRPGMTLAGVARTLERAFAVADAKAVALVVNSPGGSPVQSRQIYL 82

Query: 89  AIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
            I+++   K  PV+  V ++AAS GY+I+CA + I    +S++GSIGV+         + 
Sbjct: 83  RIRQLSREKEIPVLVFVEDVAASGGYMIACAGDEIFCDPSSILGSIGVVGGGFGFTELIR 142

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           K+GV  +   +   KA   PF   NP  V  ++ +    +  F+ LV  SR         
Sbjct: 143 KIGVERRLYTAGEHKATLDPFLPENPDDVARLKAIQREIHATFIELVKASRGGRLKGADD 202

Query: 207 -LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L  G  W G  +  +GL D +G      ++ +    D+    +   +          K 
Sbjct: 203 LLFTGEYWAGERSVALGLADGIGDLRSTLRARF---GDKVSTPLIAPSTGLLSGLLGRKA 259

Query: 266 LSISSLLEDTIPLMKQTKVQGL--WAVW 291
            + +  L+  +  M    +  L   A+W
Sbjct: 260 GAGTLTLQGGMAGMPDELISALETRAIW 287


>gi|330818852|ref|YP_004351069.1| signal peptide peptidase SppA, 36K type [Burkholderia gladioli
           BSR3]
 gi|327374394|gb|AEA65746.1| signal peptide peptidase SppA, 36K type [Burkholderia gladioli
           BSR3]
          Length = 318

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 106/243 (43%), Gaps = 9/243 (3%)

Query: 33  DNSPHVARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
            + P +A + + G +      +  ++  +      D   A+ + + S GGS    E I  
Sbjct: 64  SHGPELAVVHLSGNVGTVSARADLVVPALREAFDSDKVRAIALMIDSGGGSPIDAERIDD 123

Query: 89  AIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
           A+  +K +  KPVI  ++ + ASA YL++  S+ ++A   SLVGSIG + +       L 
Sbjct: 124 ALAALKKQHPKPVIAVINSLGASAAYLVAMHSDEVMAGRFSLVGSIGAVIESWDFSGALG 183

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           ++ V  +   S  +KA  +P+    P A    Q +V+     F+  +  +R     K + 
Sbjct: 184 RVDVKQRVYASGALKAMLNPYIPATPAADDKAQALVNVLAGEFLGELERTRGAKLSKDVK 243

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
              G +W G  AK++GL+D VG  E++   L           + D+ P  +     L   
Sbjct: 244 YDTGEVWDGEAAKRIGLVDTVGTIEDLQVRLQQQ---YQGIHVHDFGPNASPATAGLSAS 300

Query: 267 SIS 269
             +
Sbjct: 301 VAA 303


>gi|53803155|ref|YP_115065.1| prophage LambdaMc01, U7 family peptidase [Methylococcus capsulatus
           str. Bath]
 gi|53756916|gb|AAU91207.1| prophage LambdaMc01, peptidase, U7 family [Methylococcus capsulatus
           str. Bath]
          Length = 408

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 14/229 (6%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIE-------------DSQELIERIERISRDDSATALI 70
           +          +  +A I + G +                  L  +++         A++
Sbjct: 45  FAPPMRAAPAATQRIAVIPVHGTLVRRTVGLEAESGLASYAGLAAQLDAAVASAQVDAIL 104

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + + SPGG +     +   I+     KPV    ++MA SA Y ++ A++ +  + T  VG
Sbjct: 105 LDIDSPGGESGGVFDLADRIRAAAAVKPVWAVANDMAFSAAYALASAASKVFVSRTGGVG 164

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+  +        K GV   +V +   K + +P   ++ +A  ++Q  VD  Y  FV
Sbjct: 165 SIGVIAMHVDQSAKDAKDGVRYTAVFAGERKNDLNPHEPISDEAHALLQAEVDRVYRLFV 224

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             V+  R +          G  + G +A   GL D VG  ++    L  
Sbjct: 225 DTVARHRGLDARAIEATEAGLFF-GQDAVTAGLADAVGTFDDALSQLTE 272


>gi|9630469|ref|NP_046900.1| gp5 [Enterobacteria phage N15]
 gi|3192688|gb|AAC19041.1| gp5 [Enterobacteria phage N15]
          Length = 447

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 91/227 (40%), Gaps = 14/227 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             VA + + G              +     +I R+++   D     +++ + +PGG    
Sbjct: 82  NGVAVLPVSGTLVSKTRSLQPYSGMTGYNGIIARLQQAISDPGVDGILLDMDTPGGMVSG 141

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I ++++ KP+    ++M  SAG LI+ +++  +  +T+  GSIGV+  +    
Sbjct: 142 AFDCADIIARMRDIKPIWALANDMNCSAGQLIASSASRRLVTQTARTGSIGVMMAHSNYG 201

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L   GV +  + S   K + +P+ ++        Q  +D++   F   VS    +   
Sbjct: 202 AALKTNGVEVSLIYSGDHKVDGNPYEKLPEDVRADFQTRIDATRQMFAEKVSAYTGMSVQ 261

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
             L  ++  +++G E+   GL D +    +    +      +    I
Sbjct: 262 DVLD-TEAAVFSGQESVDNGLADELVNNTDALGVMREALDRRKKITI 307


>gi|260914078|ref|ZP_05920551.1| S49 family peptidase [Pasteurella dagmatis ATCC 43325]
 gi|260631711|gb|EEX49889.1| S49 family peptidase [Pasteurella dagmatis ATCC 43325]
          Length = 351

 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 109/268 (40%), Gaps = 18/268 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAY 81
              + +  PH+  +  +G I  S+      E+   I     +D    +++ L SPGG  +
Sbjct: 95  GEFINERKPHLYVLNFKGDISASETTALREEISAIIGVAQPEDE---VLLRLESPGGVVH 151

Query: 82  AGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + ++K         V ++AAS GY+++C ++ IVAA  +++GS+GV+ Q P 
Sbjct: 152 GYGLAASQLARLKKHNIKLTIAVDKVAASGGYMMACVADKIVAAPFAILGSVGVVAQIPN 211

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           +   L K  V +  + +   K   +   E   K  Q  Q  ++ ++  F + V+++R  P
Sbjct: 212 IHRLLKKHDVDVDVMTAGEYKRTVTLLGENTEKGKQKFQQELEETHDLFKQFVAQNR--P 269

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
           +     ++ G  W G +A ++ L+D +   +++             +K+           
Sbjct: 270 HLDVNKIATGEHWFGQQALELNLVDEIATSDDLILDAIK------TKKVVSLKYQTKKSL 323

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                +     ++  +        + L 
Sbjct: 324 IQKIGMQAEESVDGVLLRWLSRNNRQLL 351


>gi|14189731|gb|AAK54346.1| probe 6 protein [Chlamydomonas reinhardtii]
          Length = 721

 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 100/264 (37%), Gaps = 60/264 (22%)

Query: 35  SPHVARIAIRGQIE--------------------DSQELIERIERISRDDSATALIVSLS 74
            P +A + + G I                     D+ +L+  +  I  D+   A++V ++
Sbjct: 405 EPCIAVVTVSGTIVQGPVPPGSLAASNQQQQQVVDAAKLVADLRTIMDDNLVRAVVVRVN 464

Query: 75  SPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           SPGGSA A ++I R +Q++K   K V+  + ++AA   Y I+ A+N +VA   ++ G IG
Sbjct: 465 SPGGSALASDSIRRELQRLKTLGKTVVVSMGDVAAGGAYYIASAANAVVAQPGTVTGGIG 524

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
                      L  +                                         V  V
Sbjct: 525 AAENKTVKAAPLKHVQ-------------------------------------EELVGQV 547

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           ++SR     +   L+ GR++TG +A  +GL+D +GG EE      AL   +    +  + 
Sbjct: 548 AKSRGRAMWEMQQLAHGRVYTGRQAYDIGLVDQLGGLEEAISHAKALADLEEDVSV--YE 605

Query: 254 PPKNYWFCDLKNLSISSLLEDTIP 277
            P      +L     S ++     
Sbjct: 606 HPLRRLPLELTLFKRSGIVAGAAG 629


>gi|254454366|ref|ZP_05067803.1| peptidase U7 [Octadecabacter antarcticus 238]
 gi|198268772|gb|EDY93042.1| peptidase U7 [Octadecabacter antarcticus 238]
          Length = 479

 Score = 97.0 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 14/205 (6%)

Query: 36  PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A I I G +                + +  +I+    D +   + + + S GG    
Sbjct: 81  DGIAVIEISGVLIHRGGWIGQSSGQTSYEGIAAQIDAAGNDPAVRGIALEIDSFGGEVAG 140

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
              +   I+ ++  KPV + V E A SAGY ++  ++ I+   T  VGSIGV+  +  + 
Sbjct: 141 VFDLADRIRAIRATKPVWSFVAEHAFSAGYALASQADRILLPRTGAVGSIGVVVMHADMS 200

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LD+ G+ +  + S   K + +P+S +       +Q  +D     F   V+  R     
Sbjct: 201 GQLDQDGMRVTLIHSGEHKVDGNPYSPLPDGVRADIQGEIDVLRFLFAETVAAGRAGRLS 260

Query: 203 KTLVLSD-GRIWTGAEAKKVGLIDV 226
           +   L+     + GA+A   GL D 
Sbjct: 261 QEAALATKAATYRGADAVAAGLADE 285


>gi|313618717|gb|EFR90640.1| putative signal peptide peptidase SppA [Listeria innocua FSL
           S4-378]
          Length = 206

 Score = 97.0 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 98/201 (48%), Gaps = 3/201 (1%)

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           + + P    +  MAAS GY IS  ++ I A++ +L GS+GV+ Q       + KLGVS  
Sbjct: 4   ERKIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGVIMQGYDYSELMKKLGVSDN 63

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
           ++KS   K   S    +     ++MQ ++D SY+ FV++V+  R +  ++   ++DGRI+
Sbjct: 64  TIKSGAYKDIMSGTRPMTDDEKKIMQSMIDDSYNEFVKVVATGRGMSEEQVRKIADGRIY 123

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS---S 270
            G +AK+ GLID  G QE+  ++L      +    I+   P        +    +S   +
Sbjct: 124 DGRQAKENGLIDAFGYQEDALEALKKEKDLKDATVIQYDAPESFSSLFSVAAQKMSGQNA 183

Query: 271 LLEDTIPLMKQTKVQGLWAVW 291
            +   I L    K   +  ++
Sbjct: 184 DITQLIKLTGTLKAPRMMYLY 204


>gi|118593769|ref|ZP_01551138.1| Peptidase U7 [Stappia aggregata IAM 12614]
 gi|118433679|gb|EAV40342.1| Peptidase U7 [Stappia aggregata IAM 12614]
          Length = 294

 Score = 97.0 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 15/223 (6%)

Query: 35  SPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
           S + A I + G +                + +  +++ I+ D+    +I+ ++S GG A 
Sbjct: 70  SGNTALITVDGSLVNRGAWIGTNSGLTSYEGIAAQVDDIAADNDIRNVIIDMNSYGGEAT 129

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
               +   I+K+++ K VI  V+++AASAGY I+ A++ IV + TSLVGSIGV+  +   
Sbjct: 130 GMSTLAAKIRKLRSTKTVIAVVNDVAASAGYGIASAADEIVVSPTSLVGSIGVVMLHLDR 189

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN-IP 200
              L+  G+    + +   K + + F  ++    + MQ  V + Y  F+  V   R+   
Sbjct: 190 SNELEAKGIKPTLIHAGAKKVDGNSFEPLSDNVREDMQKDVMAFYADFLNTVEAGRSSWR 249

Query: 201 YDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
                       ++ G EA   GL D +G  EEV   L     
Sbjct: 250 LSADKARKTEADVFIGNEAISAGLADRLGTLEEVLAELAPTKG 292


>gi|117926098|ref|YP_866715.1| serine peptidase [Magnetococcus sp. MC-1]
 gi|117609854|gb|ABK45309.1| protein C, Serine peptidase, MEROPS family S49 [Magnetococcus sp.
           MC-1]
          Length = 433

 Score = 97.0 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 15/223 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLS 74
           SS +      +A + I G +                  + E++   + D +  A+++ + 
Sbjct: 51  SSDLMVTPNGIAIVPIHGTLVKRVGAVEAASGLMSYASIEEKLLDAATDPAVRAILMDID 110

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGG       +   IQ+    KP+     +  ++A  + S A + I+  +T+ VGSIGV
Sbjct: 111 SPGGEVGGVFDLAAMIQEAGQGKPIWALADDAFSAAYLIASQA-HRIIVPQTAGVGSIGV 169

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +  +        K G S  +V +   K + S  + ++  A   +Q  VD  Y  F  +V+
Sbjct: 170 IAAHVDESEKDAKEGRSYTTVFAGARKNDFSSHAPLSDAARFNLQQEVDRLYGMFTGMVA 229

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
             R +P         G  + G+ A   GL D VG   +    L
Sbjct: 230 SGRGMPEAAVRATEAGLFF-GSNAVSSGLADQVGTIRDALAGL 271


>gi|156974266|ref|YP_001445173.1| hypothetical protein VIBHAR_01981 [Vibrio harveyi ATCC BAA-1116]
 gi|156525860|gb|ABU70946.1| hypothetical protein VIBHAR_01981 [Vibrio harveyi ATCC BAA-1116]
          Length = 450

 Score = 96.6 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 97/236 (41%), Gaps = 14/236 (5%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDD 64
           V          S     S  +A I I G              +     ++ R+     D 
Sbjct: 56  VASGFSRTRSGSRSYQVSQGIAIIPIDGSLVHKYGHIKPYSGMTGYDGIMHRLREAVADP 115

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
              A+++ +++PGG       +   I +++  KP+ +  ++M  SAG +I+ A +  +  
Sbjct: 116 EVKAMLLDMNTPGGMVAGCFDLADKIAEMRKIKPIWSLGYDMHCSAGQMIASACSRRLIT 175

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
           +T + GS+GV+  +  ++  LD+ GV I  V +   KA+ +P+  +  +  +  Q   +S
Sbjct: 176 QTGIAGSVGVIMAHTNIEKMLDQQGVEITLVTAGDHKADGNPYQSLPREVREKWQSEAES 235

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +   F    +E   +     L  ++ +++ G  A  VG  + V    +  Q +   
Sbjct: 236 TRQMFAGKAAEYMGVDIKTILS-TEAQVYEGQAAVDVGFANEVVNGLDAVQIMTEQ 290


>gi|170080914|ref|YP_001730234.1| head protein [Escherichia coli str. K-12 substr. DH10B]
 gi|169888749|gb|ACB02456.1| head protein [Escherichia coli str. K-12 substr. DH10B]
 gi|312019774|emb|CBH95056.1| gpC [Enterobacteria phage phi80]
          Length = 447

 Score = 96.6 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 89/217 (41%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++   D     +++ + +PGG    
Sbjct: 82  NGIAVLPVSGTLVSKTRALQPYSGMTGYNGIIARLQQAISDPGVDGILLDMDTPGGMVSG 141

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I ++++ KP+    ++M  SAG LI+ +++  +  +T+  GSIGV+  +    
Sbjct: 142 AFDCADIIARMRDIKPIWALANDMNCSAGQLIASSASRRLVTQTARTGSIGVMMAHSNYG 201

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L   GV +  + S   K + +P+ ++        Q  +D++   F   VS    +   
Sbjct: 202 AALKTNGVEVTLIYSGDRKVDGNPYEKLPKDVRADFQTRIDATRQMFAEKVSAYTGMSVQ 261

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G E+   GL D +    +    +  
Sbjct: 262 DVLD-TEAAVFSGQESLDNGLADELVNNTDALGVMRE 297


>gi|46402091|ref|YP_006585.1| putative head maturation protease [Klebsiella phage phiKO2]
 gi|40218235|gb|AAR83021.1| putative head maturation protease [Klebsiella phage phiKO2]
          Length = 306

 Score = 96.6 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 101/236 (42%), Gaps = 15/236 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRG--------------QIEDSQELIERIERISRDDSATALIV 71
           + +S     +  VA I + G              ++   + +  ++     D S + +++
Sbjct: 56  ASASEQVQPAGGVAVIPVHGLLVARRGQITQACTELTSYERIRSQLTAALNDPSISEIVL 115

Query: 72  SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
            ++S GG+A   + +   I + +  KP+   V+  A SA Y I+ A + I+ ++TS VGS
Sbjct: 116 DINSGGGAAVGCKELADYIYQSRETKPITAIVNYNAFSAAYFIASACSKIIVSQTSGVGS 175

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IGV+ ++       +K+G++  ++     K   +    ++ +A  M Q ++D  Y  F  
Sbjct: 176 IGVIMEHLDTSKLEEKMGLTFTTIFRGDNKNNGTQHEPLSEEAQAMFQGMIDEMYETFTG 235

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            V+E R +     +    G  + G  A   GL D +   +    ++ A       +
Sbjct: 236 SVAEYRGLDRQVVVDTQAGLYF-GPGAVSAGLADEISDPQSAINAIAAKYKQPRQK 290


>gi|311694689|gb|ADP97562.1| sohB protein, peptidase U7 family [marine bacterium HP15]
          Length = 353

 Score = 96.6 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 108/252 (42%), Gaps = 13/252 (5%)

Query: 27  WSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISR--DDSATALIVSLSSPGGSAYA 82
            +   +D+   V  +   G I   D+  L   I  +    D     +++ L S GG  ++
Sbjct: 94  NTDEQDDSRGRVYVLDFDGDIKASDTDPLRRAITAVLSIADPEKDEVVIRLESGGGLVHS 153

Query: 83  GEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + +++++   +T    ++AAS GY+++C ++ IVA+  +++GSIGV+ Q P  
Sbjct: 154 YGLAAAQLDRIRSKGLRLTACVDKVAASGGYMMACVADRIVASPFAILGSIGVVAQLPNF 213

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
             FL K  V  + + +   K   + F E   K  Q   + ++ ++  F   VSE R  P 
Sbjct: 214 HRFLKKNDVDFEVLTAGEHKRTMTIFGENTDKGRQKFLEDLEDTHGLFKEYVSERR--PD 271

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                +++G IW G  A +V LID +   +E                +      +     
Sbjct: 272 LDIAAVANGDIWFGKRALEVKLIDEIKTSDEYLIEACDRA------DVVSVAYQRKRTLP 325

Query: 262 DLKNLSISSLLE 273
           +   L+ SS LE
Sbjct: 326 EKLGLATSSALE 337


>gi|163745636|ref|ZP_02152996.1| peptidase, family S49, putative [Oceanibulbus indolifex HEL-45]
 gi|161382454|gb|EDQ06863.1| peptidase, family S49, putative [Oceanibulbus indolifex HEL-45]
          Length = 244

 Score = 96.6 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 7/218 (3%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV--ITEV 103
            + +   +   IER        A+ + ++SPGGS      I   I+++   K +  I  V
Sbjct: 8   AVLNDATMGPVIERAFAKGKPAAVALEINSPGGSPVQSSLIGARIRRLSEEKNIPVIAFV 67

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
            ++AAS GY ++ A++ I A  +S+VGSIGV+     V  F+ + GV  +   +   K+ 
Sbjct: 68  EDVAASGGYWLAAAADEIYADPSSVVGSIGVISASFGVHEFIREHGVERRVYTAGQSKSM 127

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
             PF   NP+ V  ++ +++  +  F+  V   R     +   L  G IW    A ++GL
Sbjct: 128 LDPFRPENPEDVARLKVLLEDIHENFIGHVKTRRAGKLPEGQDLFTGEIWLAKRAAELGL 187

Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
           ID +G  + + +  +         K++ +   +     
Sbjct: 188 IDGIGHLKPLLKERFG-----EKVKLRRYGVKRGLLSR 220


>gi|83645660|ref|YP_434095.1| periplasmic serine protease (ClpP class) [Hahella chejuensis KCTC
           2396]
 gi|83633703|gb|ABC29670.1| Periplasmic serine protease (ClpP class) [Hahella chejuensis KCTC
           2396]
          Length = 427

 Score = 96.6 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 97/253 (38%), Gaps = 15/253 (5%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             VA + + G              +     LI RI     D     +++ + SPGG    
Sbjct: 76  DGVAIVPVSGTLVHKFGYLRPTSGMTGYDGLIARINDAVGDPEVRGILLDMDSPGGEVAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I     +KP+ +  ++MA SA + I+ A++  +  ++ + GS+GV+  +   +
Sbjct: 136 CFDTTAMIAAYAKQKPIWSLTYDMACSACFAIASATSRRLITQSGVAGSVGVIMAHVSRQ 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L  +G  +  + S   KAE +P+ ++  + +   Q  + +    F  +V+ +  +  +
Sbjct: 196 EELAAMGRKVTLIYSGKYKAEGNPYEDLPEETLSRFQAEMHTLREQFAGIVATNTGLSIE 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA-LGVDQSIRKIKDWNPPKNYWFC 261
             +  ++ +++ G  A  VG    +    E        L    S + +      +     
Sbjct: 256 AVMS-TEAQVYRGQAAIDVGFAHEIVNGHEAVGIFSEYLKTTNSNKGVVYMTTEQTQPVA 314

Query: 262 DLKNLSISSLLED 274
           D+      +  E+
Sbjct: 315 DVAKERAQAATEE 327


>gi|22299153|ref|NP_682400.1| protease IV-like protein [Thermosynechococcus elongatus BP-1]
 gi|22295335|dbj|BAC09162.1| tlr1610 [Thermosynechococcus elongatus BP-1]
          Length = 369

 Score = 96.2 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 117/295 (39%), Gaps = 39/295 (13%)

Query: 13  VMLSLVTLTVVYFSWSSH------VEDNSPHVARIAIRGQIEDSQ--------------- 51
           V  +L+ + +   S +S        E +   + +I I G I  S                
Sbjct: 39  VFFALLGILLAPASETSPYEHISGKESSRDRILQIDIAGPILGSPQSEEDIFFAPLVGVT 98

Query: 52  ---ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEM 106
              E+  ++   ++D +  A+ V++ +PGG+ +  +AI   I++ +   +KPV   +  +
Sbjct: 99  YGYEVQRQLAEAAKDKTIQAVFVNIKTPGGTIFGSQAIAEGIRRYRKATQKPVYAFIEGI 158

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV------------SIKS 154
           AAS G      ++ I A   S+VGSIG+L    +       L                ++
Sbjct: 159 AASGGVWAMVTADQIYADHGSMVGSIGILGPSVFYYDRPTSLDNGLLRGGVTANSIEERT 218

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
           + +   K   +PF  + P+ +Q++Q  ++  Y  F+  V+++R I            I++
Sbjct: 219 LSAGRSKDIGNPFRRLTPQEIQVLQAGLEQEYTKFINHVAQARGIDPSVIRNEMGAMIFS 278

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFCDLKNLSI 268
             +A++  LID    + E   +L      +     I  +   ++     L  +  
Sbjct: 279 NDQAQRYRLIDGTRSRSETLNALARAANLKEGEYAIVRFRRDRSPLINQLFGVQS 333


>gi|313608567|gb|EFR84447.1| putative signal peptide peptidase SppA [Listeria monocytogenes FSL
           F2-208]
          Length = 203

 Score = 96.2 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 3/201 (1%)

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           +   P    +  MAAS GY IS  ++ I A++     S+GV+ Q      F+ KLGVS  
Sbjct: 1   ERNIPFYVSMGSMAASGGYYISAPADKIFASKEXXXXSLGVIMQGYDYSEFMKKLGVSDN 60

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
           ++KS   K   S    +     ++MQ ++D SY+ FV++V++ R +  +K   ++DGRI+
Sbjct: 61  TIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVAKGRGMSAEKVRKIADGRIY 120

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS---S 270
            G +AK+ GLID  G QE+  ++L           I+   P        +    IS   +
Sbjct: 121 DGRQAKENGLIDEFGYQEDALEALKKEQGLADATVIQYDAPEDFSSLFSVAAQKISGQNA 180

Query: 271 LLEDTIPLMKQTKVQGLWAVW 291
            +   I L    K   +  ++
Sbjct: 181 DISQLIKLTGTLKAPRMMYLY 201


>gi|299145691|ref|ZP_07038759.1| putative signal peptide peptidase SppA [Bacteroides sp. 3_1_23]
 gi|298516182|gb|EFI40063.1| putative signal peptide peptidase SppA [Bacteroides sp. 3_1_23]
          Length = 304

 Score = 96.2 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 105/240 (43%), Gaps = 12/240 (5%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIE--------DSQELIERIERISRDDSATALIVSLSSPG 77
           +     +     VA I ++G +          + E+ E + + +     + +++ + S G
Sbjct: 63  TGHDFSDAPQDSVAIIGLQGSMLKYGSYCSYGTTEVAEMVNQAADSPKISGILLDIDSGG 122

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET--SLVGSIGVL 135
           GS  A   +  AIQ  + +K  +    ++ ASA Y ++C  + I+A+ T  S  GSIGV+
Sbjct: 123 GSVDAIAPLVDAIQYAQKKKKCVVAYCDLCASAAYYVACYCDEIIASNTISSEFGSIGVM 182

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP-KAVQMMQDVVDSSYHWFVRLVS 194
             +P    + + +GV + ++ S+    +  PF      K   +  + +D     F   V 
Sbjct: 183 MSFPDYAKYYENVGVKVHTIYSNLSSYKNGPFEAAKEGKYDAIKTEELDPLARGFQEAVK 242

Query: 195 ESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
             R    + +T  +  GR++   +AK+ GLID VG ++     +  L  D  + +  +  
Sbjct: 243 NKRGSKLNLETEGIIAGRMFYANDAKENGLIDSVGTRDFALGRVRELRRDAYVNEYINSK 302


>gi|308231618|ref|ZP_07663896.1| peptidase, S49 (protease IV) family [Mycobacterium tuberculosis
           SUMu001]
 gi|308369980|ref|ZP_07666835.1| peptidase, S49 (protease IV) family [Mycobacterium tuberculosis
           SUMu002]
 gi|308216724|gb|EFO76123.1| peptidase, S49 (protease IV) family [Mycobacterium tuberculosis
           SUMu001]
 gi|308325734|gb|EFP14585.1| peptidase, S49 (protease IV) family [Mycobacterium tuberculosis
           SUMu002]
          Length = 313

 Score = 96.2 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 2/197 (1%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           ++ +  I R + D     LI  +  P   A A + +  AI      KP +        + 
Sbjct: 67  RDAVAAIHRAAEDPRVAGLIARVQLPPSPAGAVQELREAIAAFSAVKPSLAWAETYPGTL 126

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169
            Y ++ A   +    +  VG +G      +++  L K G+  + V     K+  + F+E 
Sbjct: 127 SYYLASAFGEVWMQPSGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTED 186

Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
                  + +  ++DS      + V++SRNI  D    L+D       +A   GLID +G
Sbjct: 187 GFTDAHREAVTRMLDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIG 246

Query: 229 GQEEVWQSLYALGVDQS 245
            +++ +  +  L   + 
Sbjct: 247 FRDQAYARMAELVGVEK 263


>gi|170770009|ref|ZP_02904462.1| head-tail preconnector protein GP5 [Escherichia albertii TW07627]
 gi|170770149|ref|ZP_02904602.1| head-tail preconnector protein GP5 [Escherichia albertii TW07627]
 gi|170120975|gb|EDS89906.1| head-tail preconnector protein GP5 [Escherichia albertii TW07627]
 gi|170121075|gb|EDS90006.1| head-tail preconnector protein GP5 [Escherichia albertii TW07627]
          Length = 501

 Score = 96.2 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 91/217 (41%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + +   K + + F  +  +  Q MQ  VD+++  F   V+    +  +
Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRVDAAHRMFAEKVAMYTGLSVE 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
                ++  ++ G  A K GL D +    +    + A
Sbjct: 256 AV-TGTEAAVFEGQSAIKAGLADELINASDAISVMAA 291


>gi|46201147|ref|ZP_00055675.2| COG0616: Periplasmic serine proteases (ClpP class)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 400

 Score = 96.2 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 16/225 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLS 74
           +   +     +A I + G + +               ++ E IE  + D +  A+++ + 
Sbjct: 44  APDTQVTPDGIAIIPVMGSLVNRSSYLGAASGLSSYSDIGEDIEAAATDPNVRAILLDID 103

Query: 75  SPGGSAYAGEAIFRAIQ--KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           SPGG       +   IQ  + +  KP+     E A SA Y I C ++     +T  VGS+
Sbjct: 104 SPGGEVGGLFDLVDQIQVIRSQCGKPIWAVADEAALSAAYAIGCVADRFYVTQTGEVGSV 163

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GV+  +        + G++   + +   K + +    ++  A   +Q  VD+ Y  F+ L
Sbjct: 164 GVVAVHLDESGADSQAGLTWSFIHAGAAKVDGNSHQPLSDTARATLQADVDALYTRFIDL 223

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           V++ R    D     ++  ++ G +A  +GL D VG        L
Sbjct: 224 VAKCRKKAPDAIRA-TEANVYRGDQAVAMGLADKVGTLRVALADL 267


>gi|117924626|ref|YP_865243.1| serine peptidase [Magnetococcus sp. MC-1]
 gi|117608382|gb|ABK43837.1| protein C, Serine peptidase, MEROPS family S49 [Magnetococcus sp.
           MC-1]
          Length = 436

 Score = 95.8 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 91/223 (40%), Gaps = 15/223 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLS 74
           SS +      +A + I G +                  + E++   + D +  A+++ + 
Sbjct: 53  SSDLMVTPNGIAVVPIHGTLVKRAGAIEAASGLTSYASVEEKLLDAATDPAVRAILMDID 112

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGG       +   I +    KP+     +  ++A  + S A + I+  +T+ VGSIGV
Sbjct: 113 SPGGEVGGVFDLADMISEAGQGKPIWALADDAFSAAYLIASQA-HRIIVPQTAGVGSIGV 171

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +  +        K G S  +V +   K + S  + ++ +A   +Q  VD  Y  FV  V+
Sbjct: 172 IAVHVDESEKDAKEGRSYTTVFAGARKNDFSTHAPLSLEARTNLQLEVDRLYGMFVAAVA 231

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
             R +          G  + G +A +VGL D VG   +    L
Sbjct: 232 AGRKMHESAVRATEAGLFF-GDKAIRVGLADQVGTIRDALAGL 273


>gi|260844235|ref|YP_003222013.1| putative head protein/prohead protease [Escherichia coli O103:H2
           str. 12009]
 gi|260868584|ref|YP_003234986.1| putative head protein/prohead protease [Escherichia coli O111:H-
           str. 11128]
 gi|257759382|dbj|BAI30879.1| putative head protein/prohead protease [Escherichia coli O103:H2
           str. 12009]
 gi|257764940|dbj|BAI36435.1| putative head protein/prohead protease [Escherichia coli O111:H-
           str. 11128]
          Length = 501

 Score = 95.8 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 91/217 (41%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + +   K + + F  +  +  Q MQ  VD+++  F   V+    +  +
Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRVDAAHRMFAEKVAMYTGLSVE 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
                ++  ++ G  A K GL D +    +    + A
Sbjct: 256 AV-TGTEAAVFEGQSAIKAGLADELINASDAISVMAA 291


>gi|167624533|ref|YP_001674827.1| putative periplasmic protease [Shewanella halifaxensis HAW-EB4]
 gi|167354555|gb|ABZ77168.1| Peptidase S49 domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 342

 Score = 95.8 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 56/232 (24%), Positives = 109/232 (46%), Gaps = 9/232 (3%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGE 84
             +VE+N P V  +  +G I+ S+   L E I  I    D    +IV++ S GG  +   
Sbjct: 87  KDNVEENEPKVFVVDFKGSIDASEVASLREEISAILAIADKGDEVIVNVESGGGMVHGYG 146

Query: 85  AIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                + ++ +   P+   V ++AAS GY+++C +N I +A  ++VGSIGV+ Q P    
Sbjct: 147 LASSQLDRLRQAEIPLSICVDKVAASGGYMMACVANKIYSAPFAIVGSIGVVAQVPNFNR 206

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K  +  +   +   K   + F E   +  +  Q  ++ ++  F   +++ R  P   
Sbjct: 207 LLKKHDIDYEQHTAGDFKRTLTIFGENTDEGREKFQKELEETHVLFKEFIAKYR--PDLD 264

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
              ++ G  W G +A ++GL+D +   ++V      L  ++++ K++     
Sbjct: 265 LDKVATGEHWYGQQAIELGLVDEISTSDDVI---MKLANERTVIKVRYQLKK 313


>gi|50084405|ref|YP_045915.1| putative periplasmic protease [Acinetobacter sp. ADP1]
 gi|49530381|emb|CAG68093.1| putative protease (SohB) [Acinetobacter sp. ADP1]
          Length = 320

 Score = 95.8 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 57/281 (20%), Positives = 116/281 (41%), Gaps = 17/281 (6%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATA 68
           L  + LT      +   + N+  +  +  +G I+ S   ++++         +       
Sbjct: 36  LEFLQLTQQLVKEAKIRKKNNQKIFVLDFKGDIQASA--VDQLREEITLILATAKSGKDR 93

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ L SPGG  +        + ++++    +   V ++AAS GY+++C +N IV+A  +
Sbjct: 94  VVLRLESPGGMVHGYGLAAAQLVRLRDAGFHLTIVVDKVAASGGYMMACIANEIVSAPFA 153

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           ++GSIGV+ Q P     L +  V  +   +   K   + F E  P+     ++ +  ++ 
Sbjct: 154 ILGSIGVVAQVPNFNRLLKEHNVDFELYTAGEYKRTVTMFGENTPEGKAKFEEELKQTHA 213

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F   V + R  P      ++ G  W G +A  + L+D +   +E    L +L     + 
Sbjct: 214 LFKHFVEKYR--PQLNVEKVATGEHWYGQDALDLNLVDKLQTSDE---YLLSLLPQHDVY 268

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
            I      K     +   L  + L +  IP +    V+ L 
Sbjct: 269 VI---TTRKKPTLGERLGLQAAQLADSFIPAVMNKVVESLV 306


>gi|325292902|ref|YP_004278766.1| peptidase S49 [Agrobacterium sp. H13-3]
 gi|325060755|gb|ADY64446.1| peptidase S49 [Agrobacterium sp. H13-3]
          Length = 372

 Score = 95.8 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 119/278 (42%), Gaps = 17/278 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLS 74
           +  + +++  VA I + G + D  +             + + + +   +    A+++ + 
Sbjct: 52  AKEIAESTGSVAIIPVYGVLADKMDLFSAMSGGTSYAGIKKALHKALSNADIKAVVLDID 111

Query: 75  SPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           SPGG+    + +   I+K++   KP+I +V+ +AASA Y I+ +++ IV   +   GSIG
Sbjct: 112 SPGGTVPGTDELATEIRKLRGGEKPIIAQVNSLAASAAYWIAASTDEIVVTPSGRAGSIG 171

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V   +  +   L++ G+    + +   K E +    +    +  +QD V+ SY+ FV  V
Sbjct: 172 VYTAHDDLSAALEQRGIKRTYISAGKHKVEGNETEPLGKDTLAHVQDGVNRSYNRFVASV 231

Query: 194 SESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           +E R +   K       GR++        G++D +   +E      A      +R+IK  
Sbjct: 232 AEGRGVTVSKVEDNFGQGRVFYAEALMDRGMVDRIATLDETLARYGADVEPAPVRRIKAA 291

Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
           N  K      L     +   E       +  ++GL  +
Sbjct: 292 NAAKAEAAQTLVAKMTAG--EQITKREFENGIRGLMGL 327


>gi|90425823|ref|YP_534193.1| peptidase S49 [Rhodopseudomonas palustris BisB18]
 gi|90107837|gb|ABD89874.1| peptidase S49 [Rhodopseudomonas palustris BisB18]
          Length = 302

 Score = 95.8 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 109/255 (42%), Gaps = 17/255 (6%)

Query: 38  VARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           V  + + G I     L          + ++R     +A A+ ++++SPGGS      I+ 
Sbjct: 33  VPVVRLSGVIGAVTPLRPGLSLAGTAKMLDRAFATRNAKAVALAINSPGGSPVQSRQIYL 92

Query: 89  AIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
            I+++   K  PVI  V ++AAS GY+++CA++ I    +S+VGSIGV+         L 
Sbjct: 93  RIRQLAAEKKLPVIAFVEDVAASGGYMLACAADEIYVDPSSIVGSIGVVGGTFGFPELLK 152

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           K+GV  +   +   KA+  PF   +P+ V  ++ +    +  F+ LV +SR         
Sbjct: 153 KIGVERRLYTAGEHKAQLDPFLPEDPEDVARVKALQREIHAMFISLVKDSRGAKLKGAED 212

Query: 207 -LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L  G  W G  +  +GL D +G      ++ +   V   +       P           
Sbjct: 213 LLFSGEYWAGGTSVTLGLSDGIGDLRGTLRARFGDKVRTPV-----IAPASGMLAGLFGR 267

Query: 266 LSISSLLEDTIPLMK 280
            S ++ L     + +
Sbjct: 268 RSAATSLGPFDAVAE 282


>gi|114769102|ref|ZP_01446728.1| peptidase, family S49 [alpha proteobacterium HTCC2255]
 gi|114550019|gb|EAU52900.1| peptidase, family S49 [alpha proteobacterium HTCC2255]
          Length = 261

 Score = 95.8 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 102/260 (39%), Gaps = 12/260 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIE-----DSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
            +        V+ + + G I      +   L   +E+        A+ + ++SPGGS   
Sbjct: 4   KNPFRKKRKSVSIVNLNGMIATGRGLNDAGLAPALEKAFS-KKPDAVALVINSPGGSPVQ 62

Query: 83  GEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
              I   I+++ N K  PV   V ++AAS GY ++ +++ I    +S+VGSIGV+     
Sbjct: 63  SSLIGARIRRLANEKDIPVYAFVEDLAASGGYWLAASADEIYIDPSSVVGSIGVISTGFG 122

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           +   ++K G+  +   +   K+   PF     + ++ ++ +++  +  F   +S  R   
Sbjct: 123 LDQLINKHGIERRVHTAGNSKSMLDPFQPQKDEDIKRLKKLLEDVHQNFKDHISSCRGSK 182

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 L  G IW G  A   GL+D +G    V         D+   K           F
Sbjct: 183 LAD-RDLFTGEIWVGQRAIDDGLVDGIGH---VIPFFKEKFGDKVSFKTFGQKKSILSRF 238

Query: 261 CDLKNLSISSLLEDTIPLMK 280
                  I   +E+     +
Sbjct: 239 GTKIYGDIGHSIEERAAFAR 258


>gi|152978941|ref|YP_001344570.1| putative periplasmic protease [Actinobacillus succinogenes 130Z]
 gi|150840664|gb|ABR74635.1| Peptidase S49 domain protein [Actinobacillus succinogenes 130Z]
          Length = 353

 Score = 95.4 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 17/252 (6%)

Query: 32  EDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           +++ P +  +  +G I+ S      +E+   +        A  +++ L SPGG  +    
Sbjct: 100 QEHKPTLYVLNFKGDIQASATTALREEITALLSVAK--PEADEVLLRLESPGGLVHGYGL 157

Query: 86  IFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
               + ++K     +T  V ++AAS GY+++C ++ IVAA  ++VGS+GV+ Q P +   
Sbjct: 158 AASQLARLKQAGIKLTVAVDKVAASGGYMMACVADKIVAAPFAIVGSVGVVAQVPNIHRL 217

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K  V +  + +   K   +   E   K  Q  Q  ++ ++  F R V+E+R  P  + 
Sbjct: 218 LKKHDVDVDVMTAGEFKRTVTILGENTEKGKQKFQQELEETHELFKRFVAENR--PQLEV 275

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             ++ G  W G +A  +GLID +   ++V             + + +    +        
Sbjct: 276 EKIATGEHWFGQQALALGLIDKIATSDDVILQAMK------EKSVLELQFKQKKSLIQKL 329

Query: 265 NLSISSLLEDTI 276
                   E+  
Sbjct: 330 GKQAEDSTENLF 341


>gi|85705905|ref|ZP_01037001.1| peptidase, family S49 [Roseovarius sp. 217]
 gi|85669493|gb|EAQ24358.1| peptidase, family S49 [Roseovarius sp. 217]
          Length = 244

 Score = 95.4 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 101/237 (42%), Gaps = 12/237 (5%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEM 106
             + +   IE+        A+ + ++SPGGS      I   I+++   K  PV   V ++
Sbjct: 11  SDETIGPVIEKAFSRGKPVAVALVINSPGGSPVQSSLIAARIRRLAEEKSIPVHAFVEDV 70

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           AAS GY ++ A++ I    +S++GSIGV+        FL + GV  +   +   K+   P
Sbjct: 71  AASGGYWLAVAADDIWVDASSVLGSIGVISAGFGANEFLTRQGVERRIYTAGKSKSTLDP 130

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
           F    P+ V  ++ +++  +  F+  V   R         L  G  W GA + ++GL D 
Sbjct: 131 FMPEKPEDVTRLKGILEDIHGAFITHVKSRRGSKLADDPDLFTGEFWLGARSIELGLADG 190

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
           +G      ++LY         +   +   +  +         +SL +D +  +++  
Sbjct: 191 IGHLVPKMKALYG-----DKVRFSKYGRKRGLFQRF-----GASLTQDALSFVEERA 237


>gi|152981575|ref|YP_001354459.1| hypothetical protein mma_2769 [Janthinobacterium sp. Marseille]
 gi|151281652|gb|ABR90062.1| phage-related protein [Janthinobacterium sp. Marseille]
          Length = 435

 Score = 95.4 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 14/224 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVS 72
                       +A I + G +                 E+  R++    D     +++ 
Sbjct: 46  MPRQSSTSGQAGIAVIPVVGTLVRRSMGIEAASGLMSYGEIEARLDAALADPQVAGILLD 105

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           L SPGG A     +   I+     KP+    ++ A SA + I+ A   +  ++T+ VGSI
Sbjct: 106 LDSPGGEASGVFELAERIRAASTIKPIWAHANDAAYSAAFAIAAACQRLTLSQTAGVGSI 165

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           GV+  +        K G++  +V +   K + SP   ++P+A+  +Q  VD  Y  FV  
Sbjct: 166 GVIALHVDQSVKDAKDGLNYTAVFAGSHKNDFSPHEPLSPQAITALQTEVDRLYDIFVNQ 225

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           V + R +  D       G  + G +A   GL D V   + V   
Sbjct: 226 VGQMRGLDPDAVRATEAGLFY-GEQAVAAGLADAVMPFDAVMTE 268


>gi|117925862|ref|YP_866479.1| serine peptidase [Magnetococcus sp. MC-1]
 gi|117609618|gb|ABK45073.1| protein C, Serine peptidase, MEROPS family S49 [Magnetococcus sp.
           MC-1]
          Length = 418

 Score = 95.4 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 15/224 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSL 73
           +SS +      +A + I G +                  + E++   + D +  A+++ +
Sbjct: 34  YSSDLMVTPNGIAIVPIHGTLVKRVGAVEAASGLMSYASIEEKLLDAATDPAVRAILMDI 93

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
            SPGG       +   I +    KP+     +  ++A  + S A + I+  +T+ VGSIG
Sbjct: 94  DSPGGEVGGVFDLADMISEAGQGKPIWALADDAFSAAYLIASQA-HRIIVPQTAGVGSIG 152

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V+  +        K G S  +V +   K + S  + ++ +A   +Q  VD  Y  FV  V
Sbjct: 153 VIAVHVDESEKDAKEGRSYTTVFAGARKNDFSTHAPLSLEARTNLQLEVDRLYGMFVAAV 212

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           +  R +          G  + G +A +VGL D VG   +    L
Sbjct: 213 AAGRKMHESAVRATEAGLFF-GDKAIRVGLADQVGTIRDALAGL 255


>gi|117924561|ref|YP_865178.1| serine peptidase [Magnetococcus sp. MC-1]
 gi|117608317|gb|ABK43772.1| protein C, Serine peptidase, MEROPS family S49 [Magnetococcus sp.
           MC-1]
          Length = 418

 Score = 95.4 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 15/223 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLS 74
           SS +      +A + I G +                  + E+I   + D +  A+++ + 
Sbjct: 35  SSDLLITPNGIAVVPIHGTLVKRAGAIEAASGLTSYASIEEKILDAATDPAVRAILMDVD 94

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGG       +   IQ+    KP+     +  ++A  + S A + I+  +T+ VGSIGV
Sbjct: 95  SPGGEVGGVFDLAAMIQEAGQDKPIWALADDAFSAAYLIASQA-HRIIVPQTAGVGSIGV 153

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +  +        K G S  +V +   K + S  + ++ +A   +Q  VD  Y  FV  V+
Sbjct: 154 IAAHVDESEKDAKEGRSYTTVFAGARKNDFSTHAPLSLEARTNLQLEVDRLYGMFVAAVA 213

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
             R +          G  + G +A +VGL D VG   +    L
Sbjct: 214 AGRKMNESAVRATEAGLFF-GDKAIRVGLADQVGTIRDALAGL 255


>gi|262372062|ref|ZP_06065341.1| signal peptide peptidase SppA, 36K type [Acinetobacter junii SH205]
 gi|262312087|gb|EEY93172.1| signal peptide peptidase SppA, 36K type [Acinetobacter junii SH205]
          Length = 320

 Score = 95.4 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 58/262 (22%), Positives = 107/262 (40%), Gaps = 13/262 (4%)

Query: 32  EDNSPHVARIAIRGQIEDS--QELIERIERISRDDSA--TALIVSLSSPGGSAYAGEAIF 87
           + N   +  +  +G ++ S    + E I  I     A    ++V L SPGG  +      
Sbjct: 53  KKNDQKIYVLDFKGDVQASAVDTIREEITLILATAKAGHDRVVVRLESPGGMVHGYGLAA 112

Query: 88  RAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
             + ++++    +T    ++AAS GY+++C +N I+ A  ++VGSIGV+ Q P     L 
Sbjct: 113 AQLVRLRDAGFNVTICVDKVAASGGYMMACIANEIITAPFAVVGSIGVVAQVPNFNRLLK 172

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           +  V  +   +   K   + F E  P+     ++ +  ++  F   V + R  P      
Sbjct: 173 QHNVDFELYTAGEYKRTVTMFGENTPEGKAKFEEELQQTHSLFKHFVEKYR--PQLDISK 230

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           ++ G  W G +A  + L+D +   +E   SL           +   N  K   F +   L
Sbjct: 231 VATGEHWYGEDALALNLVDKLQTSDEYLLSLLPKH------DVYVINTRKRPTFGEKLGL 284

Query: 267 SISSLLEDTIPLMKQTKVQGLW 288
             + + E  IP +       L 
Sbjct: 285 QAAQMAESLIPAVLGKMTDTLV 306


>gi|220922431|ref|YP_002497733.1| peptidase S49 [Methylobacterium nodulans ORS 2060]
 gi|219947038|gb|ACL57430.1| peptidase S49 [Methylobacterium nodulans ORS 2060]
          Length = 461

 Score = 95.4 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 97/217 (44%), Gaps = 13/217 (5%)

Query: 34  NSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSPGGSA 80
            +  VA I + G++ +              +    ++   + D    ++++ L SPGG A
Sbjct: 97  TADGVAIITMVGELVNRGAWVGASSGLISYEGFAYQMRMAAADLRTKSILLDLESPGGEA 156

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                    +++V  +KPV   V+ MAASA Y I+ A+N IV   T + GSIGV+  +  
Sbjct: 157 VGAFEAAEVVRQVAAQKPVTALVNGMAASAAYAIASAANRIVTIPTGISGSIGVVLCHLD 216

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
              +L   G+    + +   K + +P+  +       +Q  V+  Y  FV  V++ R   
Sbjct: 217 FSEWLKAEGLKPTLIFAGDHKVDANPYEPLPDDVRANLQAEVEGFYGKFVETVAKGRTNL 276

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
            +  +  +  R + G EA   GL+D VG  EEV   L
Sbjct: 277 DETKIRGTQARCFMGEEAVAAGLVDAVGTLEEVLADL 313


>gi|325914610|ref|ZP_08176951.1| ClpP class periplasmic serine protease [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325539112|gb|EGD10767.1| ClpP class periplasmic serine protease [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 331

 Score = 95.4 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 66/266 (24%), Positives = 115/266 (43%), Gaps = 15/266 (5%)

Query: 27  WSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
           W  + +     VA I I G I       +  +I  IE+  R +  T +++ + SPGGS  
Sbjct: 74  WGLNADPVRDSVALITINGGIGEMGKASATSVIPLIEQACRAERVTEVVLLIDSPGGSPT 133

Query: 82  AGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
             + I  A++  K  K   I+ +  M ASA Y+I+  ++ I A+  SLVGSIG + +Y  
Sbjct: 134 DADRIVSALKICKAAKRPVISVIGSMGASAAYMIAMHTDRIYASRYSLVGSIGAITRYVD 193

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
                 +LG+  +  KS  +K  PS  S  +P+  ++M ++V      F   +  +R   
Sbjct: 194 ASGLAQRLGLVEQVYKSGQLKGGPSTLSGSSPEDSKLMAELVVQVASEFYGQLQAARGPR 253

Query: 201 YD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
                  L  GRIWT  +A  +GL+D +   E++             +  + +       
Sbjct: 254 LKGSREDLMSGRIWTAQDAVALGLVDEIAVLEDL--------KLTRFKDKRIYQYRAKSS 305

Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQ 285
           F     L+  ++    +   KQ  ++
Sbjct: 306 FMTDMGLTAEAVSRSFVAGAKQGVIE 331


>gi|219681309|ref|YP_002456073.1| putative prohead protease [Erwinia phage phiEa21-4]
 gi|199580576|gb|ACH88963.1| putative prohead protease [Erwinia phage phiEa21-4]
          Length = 456

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 2/242 (0%)

Query: 45  GQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH 104
           G +   Q L    +    D S   +++ + S GG A     + R I++  N KPVI  V 
Sbjct: 87  GGLSSYQGLTRAFDEAVADASVDKIVLMIDSGGGEAAGCFELARHIKEHSNGKPVIAYVD 146

Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164
           E A SA Y ++CA++ I A+  + VGSIGV+  +      ++K GV    +K+  +K   
Sbjct: 147 ERACSAAYALACAASEIYASPNADVGSIGVIVIHQEFSKAMEKAGVQTNIIKAGEVKGMG 206

Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLI 224
           +PF  ++ +A  ++Q  VD+SY  FV LVS SR I  +        R++   EA  + LI
Sbjct: 207 NPFEPLSDQAKDLIQKSVDNSYTSFVNLVSSSRGISAEAVKDT-GARVYGAQEALSLKLI 265

Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
           D +   +E    L+  G   S+         +        +       ++ I  ++    
Sbjct: 266 DGIKTTDEFKDYLFG-GNGASLNVPNQPAIQQANSEELEMDAEKEKAYQEQIAALQAQIN 324

Query: 285 QG 286
           QG
Sbjct: 325 QG 326


>gi|86139851|ref|ZP_01058417.1| Peptidase U7 [Roseobacter sp. MED193]
 gi|85823480|gb|EAQ43689.1| Peptidase U7 [Roseobacter sp. MED193]
          Length = 472

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/209 (23%), Positives = 89/209 (42%), Gaps = 14/209 (6%)

Query: 36  PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A I I G +                + +  +IE  +RD S  A+ + + S GG    
Sbjct: 80  DGIAVIEISGVLIHRGGWIGQSSGQTSYEGIAAQIEAAARDASVRAVALEIDSFGGEVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
              +   ++ ++  KPV   + E A SAGY ++  ++ I+   T  VGSIGV+  +  + 
Sbjct: 140 VFDLADQVRALRRDKPVWAFIAEHAFSAGYALASQADRILLPRTGTVGSIGVVVMHADLS 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LD+ GV +  + S   K + +P+  +       +Q  +D     F   V+  R+    
Sbjct: 200 GQLDQDGVRVTMIHSGQHKVDGNPYEPLPESVRDDIQREIDVLRFLFAETVAAGRSGLLS 259

Query: 203 KTLVL-SDGRIWTGAEAKKVGLIDVVGGQ 230
           +   L ++   + G++A   GL D V   
Sbjct: 260 QDAALATEATTYRGSDAVAAGLADEVVDL 288


>gi|225166403|ref|ZP_03728068.1| 4-phytase [Opitutaceae bacterium TAV2]
 gi|224799357|gb|EEG17919.1| 4-phytase [Opitutaceae bacterium TAV2]
          Length = 512

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 9/196 (4%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79
               +N   +A +   G+I D                I  +  DD   A+++ ++SPGGS
Sbjct: 315 KRKSNNGARLAIVYAEGEIVDGEGEIGVVGGDAFSREIRALRLDDDIAAIVLRVNSPGGS 374

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           A A E I R +Q     KPV+  +   AAS GY I+ +   I A  T++ GSIGV     
Sbjct: 375 ASASEHILRELQLAAEVKPVVVSMGNYAASGGYWIALSGGRIFAEPTTITGSIGVFGLQF 434

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            V+   +  GV+   VK+       +      P  + + Q +VD +Y  F++ VS +R++
Sbjct: 435 DVQKLANTHGVTWDGVKTGRYAGAFTLTRPKTPAEMAIFQRLVDWTYAEFIKRVSTARSL 494

Query: 200 PYDKTLVLSDGRIWTG 215
              +   ++ GR+W+G
Sbjct: 495 EPARVQEIAQGRVWSG 510


>gi|218677398|ref|ZP_03525295.1| signal peptide peptidase SppA, 36K type [Rhizobium etli CIAT 894]
          Length = 194

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 83/164 (50%), Positives = 125/164 (76%)

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGG+ Y GE IF+AI+ +  +KPV+++V  +AASAGY+I+ A + I+A ++S+ GSIGV
Sbjct: 1   SPGGTTYGGEKIFKAIRAISAKKPVVSDVRTLAASAGYMIATAGDTIIAGDSSITGSIGV 60

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A  M++++V  SY+WFV LV+
Sbjct: 61  IFQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKAMIRNMVVDSYNWFVDLVA 120

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           + R +P D+ L L+DG I+TG +A KV L+D +GG+ E+   L 
Sbjct: 121 DRRKLPRDEVLKLADGTIYTGRQALKVKLVDTIGGEPEIRAYLK 164


>gi|149377455|ref|ZP_01895198.1| Periplasmic serine protease (ClpP class) [Marinobacter algicola
           DG893]
 gi|149358296|gb|EDM46775.1| Periplasmic serine protease (ClpP class) [Marinobacter algicola
           DG893]
          Length = 354

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 103/252 (40%), Gaps = 13/252 (5%)

Query: 27  WSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISR--DDSATALIVSLSSPGGSAYA 82
                E   P V  +   G I   D+  L   I  +    +     +++ L S GG  ++
Sbjct: 95  SGDAEEKPRPKVYVLDFDGDIKASDTDSLRRSITAVLSVAEPETDEVVIRLESGGGLVHS 154

Query: 83  GEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + +++ +   +T    ++AAS GY+++C ++ IVA+  +++GSIGV+ Q P  
Sbjct: 155 YGLAAAQLDRIRAKGIRLTACVDKVAASGGYMMACVADRIVASPFAILGSIGVVAQLPNF 214

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
             FL K  V  + + +   K   + F E   K      + ++ ++  F   V E R  P 
Sbjct: 215 HRFLKKNDVDFEILTAGEHKRTMTVFGENTDKGRTKFLEDLEDTHVLFKEYVGERR--PE 272

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                +++G IW G  A +V L+D +   +E                +      +     
Sbjct: 273 LDIAAVANGDIWFGRRALEVKLVDEIKTSDEFLIEACDRA------DVISVGFQRKRTLP 326

Query: 262 DLKNLSISSLLE 273
           +   L+ S+ LE
Sbjct: 327 EKLGLATSAALE 338


>gi|301156336|emb|CBW15807.1| predicted inner membrane peptidase [Haemophilus parainfluenzae
           T3T1]
          Length = 351

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 107/230 (46%), Gaps = 13/230 (5%)

Query: 35  SPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
            P V  +  +G I  S+      E+   I     DD    +++ L SPGG  +       
Sbjct: 101 KPCVYVLDFKGDISASETTALREEISAIINVAKADDE---VLLRLESPGGVVHGYGLAAS 157

Query: 89  AIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            + ++K +   +T  V ++AAS GY+++C ++ IV+A  +++GSIGV+ Q P +   L K
Sbjct: 158 QLARLKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAIIGSIGVVAQIPNIHRLLKK 217

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
             V +  + +   K   +   E   K  Q  Q  ++ ++  F + V+++R  P+     +
Sbjct: 218 HDVDVDVMTAGEFKRTVTVLGENTEKGKQKFQAELEETHQLFKQFVAQNR--PHLDVDKV 275

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256
           + G  W G +A ++ L+D +   +++  + +    V     K+K     K
Sbjct: 276 ATGEHWFGQQALELQLVDELATSDDIILEKMKDKSVIAVKYKVKKPLLQK 325


>gi|254514364|ref|ZP_05126425.1| peptidase S49 [gamma proteobacterium NOR5-3]
 gi|219676607|gb|EED32972.1| peptidase S49 [gamma proteobacterium NOR5-3]
          Length = 355

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 114/266 (42%), Gaps = 16/266 (6%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGS 79
               S      P +  +   G I  S   +E++       +        +++ L S GG 
Sbjct: 95  IKAGSEASAEKPRLYVLDFDGDIRASA--VEQLREEVSTLLGELRDTDEVLLRLESGGGM 152

Query: 80  AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            ++       +Q+++ +   +T  V ++AAS GY+++C +N I+AA  +++GSIGV+ Q 
Sbjct: 153 VHSYGLASSQLQRIRAKGVKLTVAVDKVAASGGYMMACVANEIIAAPFAIIGSIGVVAQL 212

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P     L K  + ++ + +   K   + F E   K  +  ++ ++ ++  F + V E+R 
Sbjct: 213 PNFHRVLKKNDIDVEILTAGEYKRTLTVFGENTDKGREKFKEELEDTHVLFKQFVKENRE 272

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
               +   ++ G  W G  AK V L+D +   +E  Q          +  +     P+  
Sbjct: 273 --VVEIDSVATGETWYGQRAKDVNLVDAIQTSDEYIQDKLESHGVFELTYV-----PRKN 325

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKV 284
           W   L  ++  + LE +   + Q  +
Sbjct: 326 WQQKL-GIAAENALERSFLKLWQASL 350


>gi|157961477|ref|YP_001501511.1| putative periplasmic protease [Shewanella pealeana ATCC 700345]
 gi|157846477|gb|ABV86976.1| Peptidase S49 domain protein [Shewanella pealeana ATCC 700345]
          Length = 342

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 104/253 (41%), Gaps = 12/253 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGE 84
              VE+  P V  +  +G I+  +   L E I  I    D    +IV++ S GG  +   
Sbjct: 87  KDQVEEAEPKVFVVDFKGSIDAGEVASLREEISAILAIADKGDEVIVNVESGGGMVHGYG 146

Query: 85  AIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                + ++ +   P+   V ++AAS GY+++C +N I +A  ++VGSIGV+ Q P    
Sbjct: 147 LASSQLDRLRQAEIPLTICVDKVAASGGYMMACVANKIYSAPFAIVGSIGVVAQVPNFNR 206

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K  +  +   +   K   + F E   +  +  Q  ++ ++  F   +++ R  P   
Sbjct: 207 LLKKHDIDYEQHTAGDFKRTLTIFGENTDEGREKFQKELEETHVLFKAFIAKYR--PDLD 264

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A ++GL+D +   ++V   L       + R +            D 
Sbjct: 265 LDKVATGEHWYGQQAIELGLVDEIATSDDVIMKLA------NERTVIKVQYQLKKTLSDK 318

Query: 264 KNLSISSLLEDTI 276
                S       
Sbjct: 319 IAHGASLSFNSIF 331


>gi|291621953|emb|CAX64986.1| gp05 protein [Vibrio phage VP58.5]
          Length = 423

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 1/192 (0%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            I   + +    +    D     +++   S GG A     + R I   + +KPVI  V+E
Sbjct: 87  PITSYELIRHDYDTALNDPEVKLIVMEFDSGGGEAAGCFDLARHILSTRGKKPVIAFVNE 146

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
              SA Y ++C  + +    ++  GSIGV+        +  K+G+SI+   S   KA+ S
Sbjct: 147 SCYSAAYALACCCDQVYLTSSAGAGSIGVICGRLDQTEYNRKMGLSIELFVSGDYKADFS 206

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   ++    Q +Q ++      F  LV+E+R +  ++   L  G  +TG  A   GL D
Sbjct: 207 PHKVLSDDERQRLQALIVQLGSEFHNLVAEARGMTAEQVKALKAGC-FTGRVAVDNGLAD 265

Query: 226 VVGGQEEVWQSL 237
            V  Q+E +  L
Sbjct: 266 GVMSQDEFYNYL 277


>gi|83945138|ref|ZP_00957487.1| putative proteinase IV [Oceanicaulis alexandrii HTCC2633]
 gi|83851308|gb|EAP89164.1| putative proteinase IV [Oceanicaulis alexandrii HTCC2633]
          Length = 554

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 92/236 (38%), Gaps = 27/236 (11%)

Query: 36  PHVARIAIRGQIE--------------DSQELIERIERISRDDSATALIVSLSSPGGSAY 81
            +VA I I G +                 ++ +  +   + D+   A+++   +PGG   
Sbjct: 92  DNVALIEIEGVLMSRGFEGVWSGCYWPGYRDYVAAVRAANEDERVDAILLRFDTPGGYVA 151

Query: 82  AGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
                 +A++ +      KP++    E+ ASAG  ++   + + A++ ++VGS+GV   +
Sbjct: 152 GCAEAAQALRNLNQSNGGKPLVGHADELCASAGMKLAAQCDGLFASDGAMVGSVGVRIGF 211

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +  L+K G      KS  +K   SP      +   + Q  VD     F   ++  R 
Sbjct: 212 FDFEGALEKWGERYHVYKSGRLKDMGSPLRAPTDEESAIYQAEVDHLADRFYVELALGRG 271

Query: 199 IPYDKTLVL--SDGRIWTGAE----AK----KVGLIDVVGGQEEVWQSLYALGVDQ 244
           +  +        + R +T  +    A+     V LID V  +E  +    +L    
Sbjct: 272 LDLEAVRESRGWEARTFTAGDPPPPAELDPLAVDLIDAVMTEEAAFAVAQSLAGTP 327


>gi|226952528|ref|ZP_03822992.1| protease SohB [Acinetobacter sp. ATCC 27244]
 gi|294649823|ref|ZP_06727225.1| protease SohB [Acinetobacter haemolyticus ATCC 19194]
 gi|226836710|gb|EEH69093.1| protease SohB [Acinetobacter sp. ATCC 27244]
 gi|292824306|gb|EFF83107.1| protease SohB [Acinetobacter haemolyticus ATCC 19194]
          Length = 320

 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 110/261 (42%), Gaps = 13/261 (4%)

Query: 32  EDNSPHVARIAIRGQIEDS--QELIERIERISRDDSA--TALIVSLSSPGGSAYAGEAIF 87
           + N   +  +  +G ++ S    + E I  I     A    ++V L SPGG  +      
Sbjct: 53  KKNDKKIYVLDFKGDMQASAVDTIREEITLILATAKAGHDRVVVRLESPGGMVHGYGLAA 112

Query: 88  RAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
             + ++++    +T    ++AAS GY+++C ++ I++A  ++VGSIGV+ Q P     L 
Sbjct: 113 AQLVRLRDAGFHVTICVDKVAASGGYMMACIASEIISAPFAVVGSIGVVAQVPNFNRLLK 172

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           +  V      +   K   + F E  P+     ++ +  ++  F   + + R  P      
Sbjct: 173 QHHVDFDLYTAGQYKRTVTMFGENTPEGKAKFEEELQQTHVLFKHFIEKYR--PQLDVEK 230

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           ++ G  W G +A+++ L+D +   +E       L    S   +   N  K   F +   L
Sbjct: 231 VATGEHWYGEDARQLNLVDKLQTSDEY------LLGLLSQHDVYVINTRKRPTFGEKLGL 284

Query: 267 SISSLLEDTIPLMKQTKVQGL 287
             + + E+ IP +       L
Sbjct: 285 QAAQMAENLIPTVMGKLADSL 305


>gi|15789821|ref|NP_279645.1| proteinase IV-like protein [Halobacterium sp. NRC-1]
 gi|169235542|ref|YP_001688742.1| proteinase IV [Halobacterium salinarum R1]
 gi|10580211|gb|AAG19125.1| proteinase IV homolog [Halobacterium sp. NRC-1]
 gi|167726608|emb|CAP13393.1| proteinase IV [Halobacterium salinarum R1]
          Length = 300

 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 87/226 (38%), Gaps = 18/226 (7%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDS 65
                V+ ++V         S         VA + I   I       + + +  I  +DS
Sbjct: 16  WTFIIVVAAIVGGVGGVALQSGSDSGPENSVAVVNIESAITGGTGDAVAKELRSIRGNDS 75

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
             A+++ +SSPGG+    E  +RA++++   KPV+T V   AAS GY     ++ I    
Sbjct: 76  IDAVVLRVSSPGGAVSGSEVQYRAVKRLAQEKPVVTSVRGPAASGGYYTIAPTDKIYVTP 135

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
           +SLVGS+GV+           +   +     + P                   +    + 
Sbjct: 136 SSLVGSVGVISSVSENNGVPSRWKSAPDKGTTGPA---------------DKARARAATF 180

Query: 186 YHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQ 230
              F+ +V   R          +   +I+ G +A ++GL D +GG 
Sbjct: 181 RQSFLDVVMNERGDDLTVDRETIGRAQIYAGNKAVEIGLADEIGGL 226


>gi|88703297|ref|ZP_01101013.1| protease SohB [Congregibacter litoralis KT71]
 gi|88702011|gb|EAQ99114.1| protease SohB [Congregibacter litoralis KT71]
          Length = 355

 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/267 (21%), Positives = 116/267 (43%), Gaps = 18/267 (6%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGG 78
               +      P +  +   G I  S      +E+   +  +  +D    +++ L S GG
Sbjct: 95  LKSGNEETPEQPRLYVLDFNGDIRASAVEELREEVSTLLGELRENDE---VLLRLESGGG 151

Query: 79  SAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
             ++       +Q+++N+   +T  V ++AAS GY+++C +N I+AA  +++GSIGV+ Q
Sbjct: 152 MVHSYGLASSQLQRIRNKGAKLTVAVDKVAASGGYMMACVANQIIAAPFAIIGSIGVIAQ 211

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
            P     L K  +  + + +   K   + F E   K     ++ ++ ++  F + V E+R
Sbjct: 212 LPNFHRVLKKNDIDFEVLTAGEYKRTLTIFGENTDKGRDKFKEELEDTHVLFKQFVKENR 271

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
                    ++ G  W G  AK V L+D +   +E  Q   A      +    ++ P KN
Sbjct: 272 E--VVDIDSVATGETWYGQRAKAVNLVDELQTSDEYIQDKLATHGVYEL----NYVPRKN 325

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKV 284
             +     ++  + LE +   + Q  +
Sbjct: 326 --WQQKLGIAAENALERSFLKLWQASL 350


>gi|86742603|ref|YP_483003.1| signal peptide peptidase A [Frankia sp. CcI3]
 gi|86569465|gb|ABD13274.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49
           [Frankia sp. CcI3]
          Length = 682

 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 2/202 (0%)

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSL 128
           +  +SSPGGS  A + + R  ++ +      I  + ++AAS GY ++ AS+ IVA   +L
Sbjct: 410 VFRVSSPGGSYVASDLVRREAERFRASGRPLIVSMGDVAASGGYFVALASDAIVANPGTL 469

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
            GSIGV      +   LDK+GV   +V         SP     P   + +++ +D  Y  
Sbjct: 470 TGSIGVFAGKQVISGLLDKVGVGFGAVAEGEHALMMSPRRPFTPGEREKLEEFLDRVYAD 529

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ-SIR 247
           FV  V+ +R +  D+   L+ GR+WTGA+A   GL+DV+GG  +  +  ++         
Sbjct: 530 FVDKVAVARGLSRDQAHQLARGRVWTGADAHAHGLVDVLGGLAQAIELAWSRAGLPAGET 589

Query: 248 KIKDWNPPKNYWFCDLKNLSIS 269
                 P  +         S  
Sbjct: 590 PRVRLTPKPSVLERVRSPKSSE 611



 Score = 73.1 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 84/197 (42%), Gaps = 7/197 (3%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           ++++E +   + D   + ++  +++ G      + I  AI   +          +     
Sbjct: 54  RDVVEGLRYATEDPRVSIVVAHIAACGMPLARIQEIRAAIAAFRAAGGTAIAYADTFGEF 113

Query: 111 -----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
                 Y ++CA + I  A     G  G+  + P+++  LD+LG+S++  +    K   +
Sbjct: 114 GGGTAPYYLACAFDEIWLAPPGDCGLTGLGMEAPFLRGALDRLGISVEIGQRYEYKNAVN 173

Query: 166 P--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
                +  P  ++ +  +++SS    V  ++E R +  D+   L D     G+ A   GL
Sbjct: 174 TLVERDFTPAHLEAVSRIIESSSDQIVAGIAEGRGLSTDRVRRLIDLGPLAGSVALDTGL 233

Query: 224 IDVVGGQEEVWQSLYAL 240
           +D +G ++EV+ +    
Sbjct: 234 VDRLGYRDEVYAAARER 250


>gi|327198436|ref|YP_004327024.1| head maturation protease [Erwinia phage phiEa104]
 gi|311875132|emb|CBX44392.1| head maturation protease [Erwinia phage phiEa104]
          Length = 456

 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 2/242 (0%)

Query: 45  GQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH 104
           G +   Q L    +    D S   +++ + S GG A     + R I++  N KPVI  V 
Sbjct: 87  GGLSSYQGLTRAFDEAVADASVDKIVLMIDSGGGEAAGCFELARHIKEHSNGKPVIAYVD 146

Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164
           E A SA Y ++CA++ I A+  + VGSIGV+  +      ++K G+    +K+  +K   
Sbjct: 147 ERACSAAYALACAASEIYASPNADVGSIGVIVIHQEFSKAMEKAGIQTNIIKAGEVKGMG 206

Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLI 224
           +PF  ++ +A  ++Q  VD+SY  FV LVS SR I  +        R++   EA  + LI
Sbjct: 207 NPFEPLSDQAKDLIQKSVDNSYTSFVNLVSSSRGISAEAVKDT-GARVYGAQEALSLKLI 265

Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
           D +   +E    L+  G   S+         +        +       ++ I  ++    
Sbjct: 266 DGIKTTDEFKDYLFG-GNGASLNVPNQPAIQQANSEELEMDAEKEKAYQEQIAALQAQIN 324

Query: 285 QG 286
           QG
Sbjct: 325 QG 326


>gi|300024371|ref|YP_003756982.1| peptidase S49 [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526192|gb|ADJ24661.1| peptidase S49 [Hyphomicrobium denitrificans ATCC 51888]
          Length = 277

 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 61/271 (22%), Positives = 111/271 (40%), Gaps = 22/271 (8%)

Query: 36  PHVARIAIRGQIEDSQELIE---------RIERISRDDSATALIVSLSSPGGSAYAGEAI 86
           P V  +   G I  +  L            IE+        A+ V ++SPGGS      +
Sbjct: 8   PFVPVLRFHGPIGMATPLRPGLTLGAYSNAIEKAFLVSKLPAVAVIVNSPGGSPVQSNLL 67

Query: 87  FRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           F+ I+++  + +K V     ++AAS GY ++ A + I A  +S++GSIGV+ +       
Sbjct: 68  FKRIRQLAVEKKKRVYVFCEDVAASGGYFLAIAGDEIYADPSSIIGSIGVVSRSFGFVDL 127

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L+K+GV  +   +   K +  PF   +   V  ++ +    +  F+ LV E R       
Sbjct: 128 LEKIGVERRVYTAGINKNQLDPFLPEDADDVARLKAIQRDVHDIFIGLVKERRLGKLKAP 187

Query: 205 L-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              L  G  W+ A A + GL+D +       Q ++         ++K   P K      L
Sbjct: 188 DTELFSGAFWSAARAVEFGLVDGITDIRSKMQDIFG-----EKIRLKVIEPEKPGLLARL 242

Query: 264 KNLSISSLLED-----TIPLMKQTKVQGLWA 289
           +    +  ++         L+   + + LW+
Sbjct: 243 RRTPGAIGIQTPALAFADDLVSAVETRTLWS 273


>gi|213019703|ref|ZP_03335508.1| putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|213019745|ref|ZP_03335549.1| putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994651|gb|EEB55295.1| putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994744|gb|EEB55387.1| putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 341

 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 104/241 (43%), Gaps = 14/241 (5%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQELIE 55
           +  + +LSL       F    H   N   +A I I G              +   + + E
Sbjct: 4   RRSFELLSLYNSKQPIFKNLKHFHINPKGIAIIRIYGVLTKKTEAFDHILDMTSYENIHE 63

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
            IE    D S   +++ + SPGG       +   I  V+ +K +I   ++ A SA Y I+
Sbjct: 64  EIESALEDKSIETILLDIDSPGGEVNGVFDLADFIYGVRGKKRIIAIANDDAYSAAYAIA 123

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            ++  +    TS VGSIGV+  +     F +K G+   ++ +   K + +P   +  +++
Sbjct: 124 SSAEKVFVCRTSGVGSIGVIASHIDQSGFDEKQGIKYTTIFAGKRKNDLNPHEPMTSESL 183

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           + +Q  VD  Y  FV+L++ +R +  +K      G  + G +A ++GL D V    E   
Sbjct: 184 ESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFIN 242

Query: 236 S 236
            
Sbjct: 243 K 243


>gi|134297328|ref|YP_001121063.1| peptidase S49 [Burkholderia vietnamiensis G4]
 gi|134140485|gb|ABO56228.1| protein C, Serine peptidase, MEROPS family S49 [Burkholderia
           vietnamiensis G4]
          Length = 412

 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 85/221 (38%), Gaps = 14/221 (6%)

Query: 29  SHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSS 75
                    +A I I G +                 E+   ++    D   + +++ + S
Sbjct: 50  PSAATAPKGIAVIPIHGSLVKRSLGMEAASGLTSYGEIAAMLDSALADPQVSGILLDIDS 109

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           PGG A     + R +++V   KPV    ++ A SA Y I+ ++  +   ET  VGSIGV+
Sbjct: 110 PGGEASGSFELARRVREVAAMKPVWAVANDAAYSAAYAIAASAQRLFVTETGGVGSIGVI 169

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
             +        K G    ++ +   K + SP   ++  A   +Q  VD  Y  F   V+ 
Sbjct: 170 ALHVDQSVKDAKDGYRFTAITAGAHKNDYSPHEPLSDAAKTELQGEVDRLYSIFTEHVAA 229

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
            R++  D       G  + G+ A   GL D +   E     
Sbjct: 230 MRDLDVDAVRATEAGLFF-GSNAVAQGLADGLQTLEVTLSE 269


>gi|296436953|gb|ADH19123.1| exported protease IV [Chlamydia trachomatis G/11222]
          Length = 331

 Score = 94.3 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 111/274 (40%), Gaps = 14/274 (5%)

Query: 30  HVEDNSPHVARIAIRGQIEDS-------QELIERIERISRDDSATALIVSLSSPGGSAYA 82
            +   +P +A I I   I  S       Q  ++ +           ++V +  PGG  + 
Sbjct: 57  ELGKTAPIIAVIDINDAIMASGGAAKRLQSALQPLNEAPYKGRVKGILVKIDCPGGEVFE 116

Query: 83  GEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYP 139
            + +   +   K +   PV   V  + AS GY ++C ++ I    +SL+GSIGV    Y 
Sbjct: 117 IDRMCATLSFWKKQWGIPVHVFVSGLCASGGYYVACIADKIGTTSSSLIGSIGVRSGPYF 176

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-N 198
            VK  L + GV    + +   KA  +PFS    +     Q +VD+ Y  FV  V + R  
Sbjct: 177 SVKEGLQRHGVETAILTAGDDKAPLNPFSSWTEEEYAERQGIVDAFYEQFVDHVVKYRSK 236

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           +  +K   +   R++   +A + GL+D +   QE+  + L      +   ++       +
Sbjct: 237 LSKEKLTKVLGARVFIAKQALEEGLVDAINQTQEQALEELAEACGIKDNYRVIGLG--SS 294

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
           ++     +   +S L      +     Q   ++W
Sbjct: 295 HFLKRFSSYLSNSPLVTGKLQVTALPDQQQKSLW 328


>gi|117925336|ref|YP_865953.1| serine peptidase [Magnetococcus sp. MC-1]
 gi|117609092|gb|ABK44547.1| protein C, Serine peptidase, MEROPS family S49 [Magnetococcus sp.
           MC-1]
          Length = 433

 Score = 94.3 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 91/223 (40%), Gaps = 15/223 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLS 74
           SS +      +A + I G +                  + E++   + D +  A+++ + 
Sbjct: 51  SSDLMVTPNGIAIVPIHGTLVKRVGAVEAASGLMSYASIEEKLLDAATDPAVRAILMDID 110

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           SPGG       +   I +    KP+     +  ++A  + S A + I+  +T+ VGSIGV
Sbjct: 111 SPGGEVGGVFDLAAMIHEAGQGKPIWALADDAFSAAYLIASQA-HRIIVPQTAGVGSIGV 169

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +  +        K G S  +V +   K + S  + ++ +A   +Q  VD  Y  FV  V+
Sbjct: 170 IAAHVDESEKDAKEGRSYTTVFAGARKNDFSTHAPLSLEARTNLQLEVDRLYGMFVAAVA 229

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
             R +          G  + G +A +VGL D VG   +    L
Sbjct: 230 AGRKMHESAVRATEAGLFF-GDKAIRVGLADQVGTIRDALAGL 271


>gi|309793297|ref|ZP_07687724.1| putative signal peptide peptidase SppA [Escherichia coli MS 145-7]
 gi|308122884|gb|EFO60146.1| putative signal peptide peptidase SppA [Escherichia coli MS 145-7]
          Length = 501

 Score = 94.3 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 89/216 (41%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVSGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + +   K + + F  +  +  Q MQ  +D+++  F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRIDAAHRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|209884719|ref|YP_002288576.1| peptidase S49 [Oligotropha carboxidovorans OM5]
 gi|209872915|gb|ACI92711.1| peptidase S49 [Oligotropha carboxidovorans OM5]
          Length = 432

 Score = 94.3 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 57/270 (21%), Positives = 98/270 (36%), Gaps = 14/270 (5%)

Query: 29  SHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSS 75
                    V  I I G +                + +  +++    D +  ++I+ + S
Sbjct: 68  KPYSVTKEGVGIITITGSLVNRGAWIGAKSGLTSYEGIQHQLKSARDDAAVKSIILDIHS 127

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           PGG A         +++V ++K V+  V+ MAASA Y I   +  IV  ET + GSIGV+
Sbjct: 128 PGGEAVGAFETAAIVREVASKKKVVAVVNGMAASAAYAIPSGATEIVTTETGVSGSIGVV 187

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
             +      LD  G++   + +   K + +    +       +Q  VD+ Y  F+  V++
Sbjct: 188 LLHADFSRKLDHDGITPTLIHAGAHKVDGNSLEPLTDAVKSDLQAEVDAFYETFLATVAK 247

Query: 196 SRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
            R              R + G  A   GL D VG  E V   L   G    + + K    
Sbjct: 248 GRGGRLSVAAARKTEARTFIGKAAVDAGLADRVGSFESVLAELSRAGARNLVHERKTSMD 307

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
                  D       +  +  +   +   V
Sbjct: 308 TNEQPAADAPKGISKADHDTAVKTARAEGV 337


>gi|84684063|ref|ZP_01011965.1| Peptidase U7 [Maritimibacter alkaliphilus HTCC2654]
 gi|84667816|gb|EAQ14284.1| Peptidase U7 [Rhodobacterales bacterium HTCC2654]
          Length = 855

 Score = 94.3 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 100/250 (40%), Gaps = 14/250 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQEL 53
           + + R    S++  ++           N   VA I + G              +   + L
Sbjct: 53  RWEARPEAASIIGGSLYRGVKKHAAYLNVQGVAVIPVTGTLVRRGSFVGESSGMTSYEGL 112

Query: 54  IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
             +I   + D++  A+ + + S GG A     +   I+  + +KPV   + E A SAGY 
Sbjct: 113 SAQIRAAAEDETVRAIAMEVDSFGGEAAGIFELMADIRAAREKKPVYAFLAEYALSAGYA 172

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           ++  ++ +        GSIGV+  +   +  L+  GV++  + S   K + +P+  +  +
Sbjct: 173 LASQADRVTIPPFGKAGSIGVVVIHADYQTQLENAGVNVTLIHSGKHKVDGNPYQHLKGE 232

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS-DGRIWTGAEAKKVGLIDVVGGQEE 232
               +Q   D+ +  F   V + R         +  +  ++TG +A + GL D V     
Sbjct: 233 VRDRIQQENDAMWLAFAEAVEQGRRGKITAQGAMKLEAGVFTGLDALRYGLADEVIEARA 292

Query: 233 VWQSLYALGV 242
            +++L     
Sbjct: 293 AFEALVEKLN 302


>gi|190570700|ref|YP_001975058.1| Putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190570754|ref|YP_001975112.1| Putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190570768|ref|YP_001975126.1| Putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190356972|emb|CAQ54360.1| Putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357026|emb|CAQ54419.1| Putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357040|emb|CAQ54434.1| Putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 348

 Score = 94.3 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 104/241 (43%), Gaps = 14/241 (5%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQELIE 55
           +  + +LSL       F    H   N   +A I I G              +   + + E
Sbjct: 11  RRSFELLSLYNSKQPIFKNLKHFHINPKGIAIIRIYGVLTKKTEAFDHILDMTSYENIHE 70

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
            IE    D S   +++ + SPGG       +   I  V+ +K +I   ++ A SA Y I+
Sbjct: 71  EIESALEDKSIETILLDIDSPGGEVNGVFDLADFIYGVRGKKRIIAIANDDAYSAAYAIA 130

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            ++  +    TS VGSIGV+  +     F +K G+   ++ +   K + +P   +  +++
Sbjct: 131 SSAEKVFVCRTSGVGSIGVIASHIDQSGFDEKQGIKYTTIFAGKRKNDLNPHEPMTSESL 190

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           + +Q  VD  Y  FV+L++ +R +  +K      G  + G +A ++GL D V    E   
Sbjct: 191 ESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFIN 249

Query: 236 S 236
            
Sbjct: 250 K 250


>gi|166154708|ref|YP_001654826.1| exported protease IV [Chlamydia trachomatis 434/Bu]
 gi|166155583|ref|YP_001653838.1| exported protease IV [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335981|ref|ZP_07224225.1| exported protease IV [Chlamydia trachomatis L2tet1]
 gi|165930696|emb|CAP04193.1| exported protease IV [Chlamydia trachomatis 434/Bu]
 gi|165931571|emb|CAP07147.1| exported protease IV [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 331

 Score = 94.3 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 111/274 (40%), Gaps = 14/274 (5%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQELIERIERISR-------DDSATALIVSLSSPGGSAYA 82
            +   +P +A I I   I  S    +R++   +             ++V +  PGG  + 
Sbjct: 57  ELGKTAPIIAVIDINDAIIASSGAAKRLQSALQPLNEAPYKGRVKGILVKIDCPGGEVFE 116

Query: 83  GEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYP 139
            + +   +   K +   PV   V  + AS GY ++C ++ I    +SL+GSIGV    Y 
Sbjct: 117 IDRMCATLSFWKKQWGIPVHVFVSGLCASGGYYVACIADKIGTTSSSLIGSIGVRSGPYF 176

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-N 198
            VK  L + GV    + +   KA  +PFS    +     Q +VD+ Y  FV  V + R  
Sbjct: 177 NVKEGLQRHGVETAILTAGDDKAPLNPFSSWTEEEYAERQGIVDAFYEQFVDHVVKYRSK 236

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           +  +K   +   R++   +A + GL+D +   QE+  + L      +   ++        
Sbjct: 237 LSKEKLTKVLGARVFIAKQALEEGLVDAINQTQEQALEELAEACGIKDNYRVIGLG--SG 294

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
           ++     +   +S L      +     Q   ++W
Sbjct: 295 HFLKRFSSYLSNSPLVTGKLQVTALPDQQQKSLW 328


>gi|294636161|ref|ZP_06714581.1| head-tail preconnector protein GP5 [Edwardsiella tarda ATCC 23685]
 gi|291090527|gb|EFE23088.1| head-tail preconnector protein GP5 [Edwardsiella tarda ATCC 23685]
          Length = 498

 Score = 94.3 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 95/247 (38%), Gaps = 15/247 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +  R+++   D +   +++ + SPGG A  
Sbjct: 79  NGIAVLPVTGTLVHKLGAMRPFSGMTGYDGITARLQQAISDTAVRGILLDIDSPGGQAAG 138

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I ++  +KP+    ++MA SA  LI+ A    +  +TS +GSIGVL  +   +
Sbjct: 139 AFDCADMIARLGAQKPIWALCNDMACSAAMLIASACAKRLVTQTSTIGSIGVLMAHTSYE 198

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + +    +        Q  +D++   F   V+    +  D
Sbjct: 199 KQLAQQGVDITLIYSGAHKVDGNSTQALPDSVRADFQQRIDAARRLFAEKVAMFTGLSVD 258

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ-SLYALGVDQSIRKIKDWNPPKNYWFC 261
             +  ++   ++G  +  VGL D +    +        L        +++    +     
Sbjct: 259 DVMA-TEAATYSGQASIDVGLADGMVNAADALDVMAAELKKRGGAMSVENLTAAEAAAQE 317

Query: 262 DLKNLSI 268
           + + + I
Sbjct: 318 NQRVMGI 324


>gi|321272319|gb|ADW80201.1| minor capsid protein [Wolbachia endosymbiont wVitB of Nasonia
           vitripennis phage WOVitB]
          Length = 336

 Score = 93.9 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 108/250 (43%), Gaps = 14/250 (5%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALI 70
            F  S +   N   +A I I G              +   + + E IE    D S   ++
Sbjct: 19  IFKNSKYFHINPKGIAIIRIYGVLTKKTEAFDHILDMTSYENIHEEIESALEDKSIETIL 78

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + + SPGG       +   I   + +K +I   ++ A SA Y I+ ++  +  + TS VG
Sbjct: 79  LDIDSPGGEVNGVFDLADFIYSARGKKRIIAIANDDAYSAAYAIASSAEKVFVSRTSGVG 138

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+  +     F +K G+   ++ +   K + +P  ++  ++++ +Q  VD  Y  FV
Sbjct: 139 SIGVIASHIDQSRFDEKQGIKYTTIFAGSRKNDLNPHEQMTSESLESLQKEVDRLYEMFV 198

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
           +L++ +RN+          G  + G +A ++GL D V    E   +  +  V  +  ++ 
Sbjct: 199 QLIARNRNLSIQAIKSTEAGLYF-GEKAVEIGLADGVTTFFEFINNHKSRSVSMTTDELI 257

Query: 251 DWNPPKNYWF 260
           + N  +    
Sbjct: 258 EENYRREILE 267


>gi|307317075|ref|ZP_07596516.1| peptidase S49 [Sinorhizobium meliloti AK83]
 gi|306897163|gb|EFN27908.1| peptidase S49 [Sinorhizobium meliloti AK83]
          Length = 440

 Score = 93.9 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 94/226 (41%), Gaps = 14/226 (6%)

Query: 35  SPHVARIAIRGQI------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
              + +I ++G +                 + +  ER   D +   + + + SPGG    
Sbjct: 73  KDGILQIPVKGVLLHNFPYQYGGYATGYFYIWKAFERGLADGNVRGIALIIDSPGGEVAG 132

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
              +   +   ++ KPV     E A SA Y I+  ++ I  + T  VGSIGV+  +    
Sbjct: 133 NFDLVDKMFAHRDEKPVRAYAMESAYSAAYSIASVADSITVSRTGGVGSIGVVTAHVDAS 192

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             +D++G  +  + +   K + +P+  ++P+    +Q  +D  Y  FV  V+ +R +   
Sbjct: 193 KMVDEMGWKVTFIFAGKHKVDGNPYEALSPEVKARIQARIDELYSVFVSTVARNRGMDEK 252

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE-VWQSLYALGVDQSIR 247
                 +   +T ++A   GL D +G  ++ V      L +D+   
Sbjct: 253 AVRDT-EALTFTASQATSNGLADHIGTLDDSVAAFAAELSLDEEDE 297


>gi|332534170|ref|ZP_08410018.1| putative capsid assembly protein/protease [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036459|gb|EGI72928.1| putative capsid assembly protein/protease [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 315

 Score = 93.9 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 98/234 (41%), Gaps = 15/234 (6%)

Query: 31  VEDNSPHVARIAIRGQ-------IEDS-------QELIERIERISRDDSATALIVSLSSP 76
             +   H+  + + G        I DS       + L  ++++   DDS   +++ ++S 
Sbjct: 66  DPEKGDHIVVLPVHGILIPRRGSITDSCEEVMSYEFLRTQMQKALNDDSVLEIVLDINSG 125

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GG+A A       I + ++ KP+   ++  A S  YLI+ A   I+ ++T+ VGS+GV  
Sbjct: 126 GGTAQAAFECAEFIYQARSIKPIRAIINFNAYSGAYLIAAACTEIIISDTAGVGSVGVYQ 185

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
           +   +       G  + +      K    P  E++ +     +  ++ +Y  FV  + + 
Sbjct: 186 KRLDMTKAYADAGYKMHTFHRGATKVYFHPDVEMSEEERAHTEKNIEKTYQKFVGAIVKY 245

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
           R++  ++ L  ++   + G  A  + L D +   ++    +    V +S     
Sbjct: 246 RDMSLEQVLA-TEADTYEGQAAIDLKLADRLATPQDAINQIAQGAVQRSSAPTI 298


>gi|58040764|ref|YP_192728.1| bacteriophage minor capsid protein C [Gluconobacter oxydans 621H]
 gi|58003178|gb|AAW62072.1| Bacteriophage minor capsid protein C [Gluconobacter oxydans 621H]
          Length = 265

 Score = 93.9 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 12/214 (5%)

Query: 38  VARIAIRGQIEDSQ-----------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
           VA I + G +   +           ++ + +     D + + + + ++SPGG+       
Sbjct: 53  VALIPVSGILLPGRGWSWSGATYYQDIRKALNSALDDAAVSRIALMVNSPGGTVSECFDT 112

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
              I + +  KP+   +++ A SA Y I+ A++ I   +    GSIG +  +  +   LD
Sbjct: 113 AEMIYQARGEKPIWAILNDAAYSAAYAIASAADFITVPQMGGTGSIGCVGMHVDITDALD 172

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           K G+ + + +    K +  P + +   A +  Q  +D    +FV+ V+ +R I  D    
Sbjct: 173 KAGIKVTTFQYGARKTDGYPTTPMTDPARERAQAEIDEMGDFFVQTVARNRAISADVVRN 232

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
              G  + G    ++GL D +   EE   +   L
Sbjct: 233 TQAGT-YLGRHGVEIGLADEIATPEEAIAAFLKL 265


>gi|300689946|ref|YP_003750941.1| bacteriophage head-tail preconnector protein GP5 [Ralstonia
           solanacearum PSI07]
 gi|299077006|emb|CBJ49620.1| bacteriophage head-tail preconnector protein GP5 [Contains:
           Scaffold protein GP6 (Head protein GP6)] [Ralstonia
           solanacearum PSI07]
          Length = 419

 Score = 93.9 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 88/212 (41%), Gaps = 14/212 (6%)

Query: 37  HVARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
            +A I I G +                  + ++++    D    A+++ + SPGG +   
Sbjct: 58  QIAVIPIHGTLVRRTVGLEAESGLASYTAIGDQLDAALTDPGIAAILLDVDSPGGESGGV 117

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
             +   I+     KPV    ++MA SA Y ++CA++ +  + T  VGSIGV+  +     
Sbjct: 118 FDLADRIRAAAAIKPVWVVANDMAFSAAYALACAASRVFVSRTGGVGSIGVIAMHVDQSV 177

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
              K GV   +V +   K + +P   +  +A   +Q  V   Y  FV  V+  R +  + 
Sbjct: 178 KDAKDGVRYTAVFAGARKNDLNPHEPLTDEAQAQLQAEVSRIYGLFVATVARYRGLSAET 237

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
                 G  + G +A   GL D VG  ++   
Sbjct: 238 VTATEAGLFF-GQDAVAAGLADAVGTFDDALA 268


>gi|3249702|gb|AAC24140.1| unknown [Enterobacteria phage Felix 01]
          Length = 442

 Score = 93.9 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 103/220 (46%), Gaps = 16/220 (7%)

Query: 35  SPHVARIAI---------------RGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79
              +A I I                G +   + L    +    D+S   +++ + S GG 
Sbjct: 59  KDDIAIIPIMGGLTHRMTFIDAMCTGGLSSYEGLRRGFDEALADESIKTIVLHIDSGGGE 118

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           A     + R I   + +K +I  V E A SA Y ++ ++  I+A+  + VGSIGV+  + 
Sbjct: 119 ASGCFELARHIMASRGQKKIIAYVDEFACSAAYALASSAEEIIASPDADVGSIGVIMVHQ 178

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            +    +K GV+I  +K+   K   SPF  ++ ++ + +Q  ++ +Y  F   V+ESRN+
Sbjct: 179 ELTKAFEKNGVTINVIKAGEFKGMGSPFQALSEESKERLQKRINDTYATFTGFVAESRNL 238

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +     ++  +++  EA ++GLI+ +  Q++    L  
Sbjct: 239 SEEAVKN-TEANVYSAQEALELGLINSIMSQDDFLNYLQG 277


>gi|33770512|ref|NP_892049.1| capsid protein [Yersinia phage PY54]
 gi|33636095|emb|CAD91764.1| capsid protein [Yersinia phage PY54]
          Length = 303

 Score = 93.9 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 107/257 (41%), Gaps = 21/257 (8%)

Query: 4   VLKKIKTRYV--MLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRG------------ 45
           ++  IK   V  ++  ++ T +         ++ P     +A I + G            
Sbjct: 25  IMDSIKAVLVPRLMGEMSGTALMAFEPDDQPESEPTQTGSIAVIPVHGILVPRRGQITQA 84

Query: 46  --QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103
             ++   + +  +  +   D S + +++   + GG+    + +   I   ++ KP    V
Sbjct: 85  CTELTSYERIRAQFTKALNDPSVSEIVLDFYTGGGAVSGCKELADYIFASRSVKPSTAIV 144

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
           +  A SAGY ++ A + IV + TS VGSIGV+ ++       +++G+   +      K  
Sbjct: 145 NYNAFSAGYFMASACSRIVVSHTSGVGSIGVILEHMEASKLEEQIGLKFTTFYRGDFKNA 204

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
            SP   +  +A   +Q ++D +Y  F   V+E R I   + +  +  R + G  A   GL
Sbjct: 205 GSPHEPLTDEATAYLQQLIDDAYETFTTSVAEYRGIDVQRVID-TQARTFFGQAAVDAGL 263

Query: 224 IDVVGGQEEVWQSLYAL 240
            D +   +    ++ A 
Sbjct: 264 ADELSDPQTAINNIAAK 280


>gi|238801794|ref|YP_002922844.1| putative head maturation protease [Enterobacteria phage WV8]
 gi|216263007|gb|ACJ71875.1| putative head maturation protease [Enterobacteria phage WV8]
          Length = 448

 Score = 93.9 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 103/220 (46%), Gaps = 16/220 (7%)

Query: 35  SPHVARIAI---------------RGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79
              +A I I                G +   + L    +    D+S   +++ + S GG 
Sbjct: 59  KDDIAIIPIMGGLTHRMTFIDAMCTGGLSSYEGLRRGFDEALADESIKTIVLHIDSGGGE 118

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           A     + R I   + +K +I  V E A SA Y ++ ++  I+A+  + VGSIGV+  + 
Sbjct: 119 ASGCFELARHIMASRGQKKIIAYVDEFACSAAYALASSAEEIIASPDADVGSIGVIMVHQ 178

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            +    +K GV+I  +K+   K   SPF  ++ ++ + +Q  ++ +Y  F   V+ESRN+
Sbjct: 179 ELTKAFEKNGVTINVIKAGEFKGMGSPFQALSEESKERLQKRINDTYATFTGFVAESRNL 238

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +     ++  +++  EA ++GLI+ +  Q++    L  
Sbjct: 239 SEEAVKN-TEANVYSAQEALELGLINSIMSQDDFLNYLQG 277


>gi|38707715|ref|NP_944888.1| Putative head maturation protease [Enterobacteria phage Felix 01]
 gi|33340318|gb|AAQ14669.1|AF320576_99 unknown [Enterobacteria phage Felix 01]
 gi|269975290|gb|ACZ55514.1| putative head maturation protease [Staphylococcus phage SA1]
          Length = 448

 Score = 93.9 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 103/220 (46%), Gaps = 16/220 (7%)

Query: 35  SPHVARIAI---------------RGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79
              +A I I                G +   + L    +    D+S   +++ + S GG 
Sbjct: 59  KDDIAIIPIMGGLTHRMTFIDAMCTGGLSSYEGLRRGFDEALADESIKTIVLHIDSGGGE 118

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           A     + R I   + +K +I  V E A SA Y ++ ++  I+A+  + VGSIGV+  + 
Sbjct: 119 ASGCFELARHIMASRGQKKIIAYVDEFACSAAYALASSAEEIIASPDADVGSIGVIMVHQ 178

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            +    +K GV+I  +K+   K   SPF  ++ ++ + +Q  ++ +Y  F   V+ESRN+
Sbjct: 179 ELTKAFEKNGVTINVIKAGEFKGMGSPFQALSEESKERLQKRINDTYATFTGFVAESRNL 238

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +     ++  +++  EA ++GLI+ +  Q++    L  
Sbjct: 239 SEEAVKN-TEANVYSAQEALELGLINSIMSQDDFLNYLQG 277


>gi|331672143|ref|ZP_08372936.1| head-tail preconnector protein GP5 [Escherichia coli TA280]
 gi|331070691|gb|EGI42053.1| head-tail preconnector protein GP5 [Escherichia coli TA280]
          Length = 501

 Score = 93.5 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPEEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|255348869|ref|ZP_05380876.1| exported protease IV [Chlamydia trachomatis 70]
 gi|255503409|ref|ZP_05381799.1| exported protease IV [Chlamydia trachomatis 70s]
 gi|255507087|ref|ZP_05382726.1| exported protease IV [Chlamydia trachomatis D(s)2923]
 gi|289525538|emb|CBJ15016.1| exported protease IV [Chlamydia trachomatis Sweden2]
 gi|296435097|gb|ADH17275.1| exported protease IV [Chlamydia trachomatis E/150]
 gi|296438818|gb|ADH20971.1| exported protease IV [Chlamydia trachomatis E/11023]
          Length = 331

 Score = 93.5 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 110/274 (40%), Gaps = 14/274 (5%)

Query: 30  HVEDNSPHVARIAIRGQIEDS-------QELIERIERISRDDSATALIVSLSSPGGSAYA 82
            +   +P +A I I   I  S       Q  ++ +           ++V +  PGG  + 
Sbjct: 57  ELGKTAPIIAVIDINDAIMASGGAAKRLQSALQPLNEAPYKGRVKGILVKIDCPGGEVFE 116

Query: 83  GEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYP 139
            + +   +   K +   PV   V  + AS GY ++C ++ I    +SL+GSIGV    Y 
Sbjct: 117 IDRMCATLSFWKKQWGIPVHVFVSGLCASGGYYVACIADKIGTTSSSLIGSIGVRSGPYF 176

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-N 198
            VK  L + GV    + +   KA  +PFS    +     Q +VD+ Y  FV  V + R  
Sbjct: 177 NVKEGLQRHGVETAILTAGDDKAPLNPFSSWTEEEYAERQGIVDAFYEQFVDHVVKYRSK 236

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           +  +K   +   R++   +A + GL+D +   QE+  + L      +   ++        
Sbjct: 237 LSKEKLTKVLGARVFIAKQALEEGLVDAINQTQEQALEELAEACGIKDNYRVIGLG--SG 294

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
           ++     +   +S L      +     Q   ++W
Sbjct: 295 HFLKRFSSYLSNSPLVTGKLQVTALPDQQQKSLW 328


>gi|89095506|ref|ZP_01168413.1| peptidase, U7 family protein [Oceanospirillum sp. MED92]
 gi|89080226|gb|EAR59491.1| peptidase, U7 family protein [Oceanospirillum sp. MED92]
          Length = 353

 Score = 93.5 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 17/243 (6%)

Query: 36  PHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
             +  +   G I+ S+      E+   ++    +D    +++ L SPGG  +        
Sbjct: 102 KRIYVVDFDGDIKASEVEPLRQEISAILQLAEAEDE---IVIRLESPGGMVHEYGLASSQ 158

Query: 90  IQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
           I+++K ++  +   V  +AAS GY+++C ++ ++AA  ++VGSIGV+ Q P     L K 
Sbjct: 159 IERIKRKELSLTICVDRVAASGGYMMACLADKLIAAPFAIVGSIGVIAQLPNFHRLLKKH 218

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
            V  + + +   K   + F E   K  +   + ++ ++  F   V E R  P      ++
Sbjct: 219 DVDYEVLTAGEYKRTLTVFGENTEKGREKFVEELEETHELFKNFVHEYR--PQVDIDKVA 276

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
            G IW G +A +  L+D +   ++             IR        K      L   ++
Sbjct: 277 TGEIWFGKQALENQLVDELMTSDQYLIDAAEEADIFEIRY-----EEKKTLQDKLSEFTV 331

Query: 269 SSL 271
            S 
Sbjct: 332 DSG 334


>gi|83645325|ref|YP_433760.1| putative periplasmic protease [Hahella chejuensis KCTC 2396]
 gi|83633368|gb|ABC29335.1| Periplasmic serine protease (ClpP class) [Hahella chejuensis KCTC
           2396]
          Length = 345

 Score = 93.5 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 107/250 (42%), Gaps = 16/250 (6%)

Query: 32  EDNSPHVARIAIRGQIEDSQELIERIERISRD-----DSATALIVSLSSPGGSAYAGEAI 86
           E +   V  +   G I+ S+  +  +                ++V L SPGG  +     
Sbjct: 94  EQDKSRVYVLDFDGDIKASE--VSALREAITAVLSLAKPEDEVVVRLESPGGMVHGYGLA 151

Query: 87  FRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
              +++++ R   +T    ++AAS GYL++C +N I+AA  S++GSIGV+ Q P     L
Sbjct: 152 ASQLERIRQRGVNLTVCVDKVAASGGYLMACLANKIIAAPFSIIGSIGVVAQLPNFNRLL 211

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K  +  + + +   K   + F E   K  +     ++ ++  F   V+  R  P     
Sbjct: 212 KKHDIDYEVLTAGEYKRTLTVFGENTEKGREKFMQDLEETHVLFKEFVATHR--PQVDID 269

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            ++ G +W GA AK + L+D +   ++    L     +  + +++           +   
Sbjct: 270 EVAKGEVWYGARAKDINLVDAIQTSDD---YLAERCNECEVYQVRYIEKKS---LAEKVG 323

Query: 266 LSISSLLEDT 275
           LS+++ LE  
Sbjct: 324 LSMAASLESL 333


>gi|167739953|ref|ZP_02412727.1| peptidase S49 [Burkholderia pseudomallei 14]
          Length = 316

 Score = 93.5 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 1/192 (0%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
              +       DD+   +++ + SPGGS Y    +   I + + RKP+    + +AAS  
Sbjct: 82  HFAQTFRTALADDAVGGIVLDVDSPGGSVYGVTELADEIYRSRARKPIFAVANSLAASGA 141

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y I+ A++         VG IGV   +  +   L K G+    + +   K E +PF  + 
Sbjct: 142 YWIASAASEFYVTPGGEVGDIGVHDIHVDLSKGLQKAGIETTLIAAGKYKTEGNPFHPLG 201

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQ 230
             A   MQ  VD+ Y  FV  V++ RN+P       +  GR+     AK+  ++D V   
Sbjct: 202 ADARAAMQKRVDAYYRAFVAAVAKHRNVPESAVRNGMGQGRLLDAERAKRESMVDGVATL 261

Query: 231 EEVWQSLYALGV 242
           +EV   L     
Sbjct: 262 DEVIDGLTRRVG 273


>gi|218688849|ref|YP_002397061.1| head-tail preconnector protein GP5 [Escherichia coli ED1a]
 gi|218426413|emb|CAR07239.1| Head-tail preconnector protein GP5 [Contains: Scaffold protein GP6
           (Head protein GP6)] [Escherichia coli ED1a]
          Length = 501

 Score = 93.5 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 89/217 (41%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPEEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
                ++  ++ G    + GL D +    +    + A
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMAA 291


>gi|33340432|gb|AAQ14783.1| unknown [Enterobacteria phage Felix 01]
          Length = 418

 Score = 93.5 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 103/220 (46%), Gaps = 16/220 (7%)

Query: 35  SPHVARIAI---------------RGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79
              +A I I                G +   + L    +    D+S   +++ + S GG 
Sbjct: 29  KDDIAIIPIMGGLTHRMTFIDAMCTGGLSSYEGLRRGFDEALADESIKTIVLHIDSGGGE 88

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           A     + R I   + +K +I  V E A SA Y ++ ++  I+A+  + VGSIGV+  + 
Sbjct: 89  ASGCFELARHIMASRGQKKIIAYVDEFACSAAYALASSAEEIIASPDADVGSIGVIMVHQ 148

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            +    +K GV+I  +K+   K   SPF  ++ ++ + +Q  ++ +Y  F   V+ESRN+
Sbjct: 149 ELTKAFEKNGVTINVIKAGEFKGMGSPFQALSEESKERLQKRINDTYATFTGFVAESRNL 208

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +     ++  +++  EA ++GLI+ +  Q++    L  
Sbjct: 209 SEEAVKN-TEANVYSAQEALELGLINSIMSQDDFLNYLQG 247


>gi|222148703|ref|YP_002549660.1| Periplasmic serine proteases (ClpP class) [Agrobacterium vitis S4]
 gi|221735689|gb|ACM36652.1| Periplasmic serine proteases (ClpP class) [Agrobacterium vitis S4]
          Length = 306

 Score = 93.5 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 88/221 (39%), Gaps = 14/221 (6%)

Query: 36  PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
            ++A I + G +                Q L  ++    +      ++    S GG    
Sbjct: 84  DNIAIIPVEGSLVHKGGWVGSASGETSYQGLQAQVAAARKYAGVKGVVFEYDSYGGEVNG 143

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           G     A+Q +   KP +  + + A SAGYL++  +  IV  E    GSIGV+  +    
Sbjct: 144 GFETAAAMQALSREKPTLAILTDFAYSAGYLLASQARGIVMPEFGGAGSIGVIIMHADYS 203

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L++ G+ +  ++S   KA+ +P+  ++       Q   D     F   V++ R     
Sbjct: 204 QALEQDGIKVTIIRSGKKKADGNPYEPLSADVADRWQAQADQMRDKFAETVAKGRKNRIT 263

Query: 203 KTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           K   L S+  ++   +A  +GL+D +G   E + +      
Sbjct: 264 KAKALASEADVYDAKQALSMGLVDAIGDPIEAFDAFVKEVN 304


>gi|15605222|ref|NP_220008.1| protease [Chlamydia trachomatis D/UW-3/CX]
 gi|76789231|ref|YP_328317.1| protease IV [Chlamydia trachomatis A/HAR-13]
 gi|237802922|ref|YP_002888116.1| exported protease IV [Chlamydia trachomatis B/Jali20/OT]
 gi|237804844|ref|YP_002888998.1| exported protease IV [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311310|ref|ZP_05353880.1| exported protease IV [Chlamydia trachomatis 6276]
 gi|255317611|ref|ZP_05358857.1| exported protease IV [Chlamydia trachomatis 6276s]
 gi|6578107|gb|AAC68094.2| Protease [Chlamydia trachomatis D/UW-3/CX]
 gi|76167761|gb|AAX50769.1| protease IV [Chlamydia trachomatis A/HAR-13]
 gi|231273144|emb|CAX10057.1| exported protease IV [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274156|emb|CAX10950.1| exported protease IV [Chlamydia trachomatis B/Jali20/OT]
 gi|296436025|gb|ADH18199.1| exported protease IV [Chlamydia trachomatis G/9768]
 gi|296437886|gb|ADH20047.1| exported protease IV [Chlamydia trachomatis G/11074]
 gi|297140386|gb|ADH97144.1| exported protease IV [Chlamydia trachomatis G/9301]
          Length = 331

 Score = 93.5 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 110/274 (40%), Gaps = 14/274 (5%)

Query: 30  HVEDNSPHVARIAIRGQIEDS-------QELIERIERISRDDSATALIVSLSSPGGSAYA 82
            +   +P +A I I   I  S       Q  ++ +           ++V +  PGG  + 
Sbjct: 57  ELGKTAPIIAVIDINDAIMASGGAAKRLQSALQPLNEAPYKGRVKGILVKIDCPGGEVFE 116

Query: 83  GEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYP 139
            + +   +   K +   PV   V  + AS GY ++C ++ I    +SL+GSIGV    Y 
Sbjct: 117 IDRMCATLSFWKKQWGIPVHVFVSGLCASGGYYVACIADKIGTTSSSLIGSIGVRSGPYF 176

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-N 198
            VK  L + GV    + +   KA  +PFS    +     Q +VD+ Y  FV  V + R  
Sbjct: 177 SVKEGLQRHGVETAILTAGDDKAPLNPFSSWTEEEYAERQGIVDAFYEQFVDHVVKYRSK 236

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           +  +K   +   R++   +A + GL+D +   QE+  + L      +   ++        
Sbjct: 237 LSKEKLTKVLGARVFIAKQALEEGLVDAINQTQEQALEELAEACGIKDNYRVIGLG--SG 294

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
           ++     +   +S L      +     Q   ++W
Sbjct: 295 HFLKRFSSYLSNSPLVTGKLQVTALPDQQQKSLW 328


>gi|255318358|ref|ZP_05359591.1| putative protease SohB [Acinetobacter radioresistens SK82]
 gi|262378588|ref|ZP_06071745.1| signal peptide peptidase SppA, 36K type [Acinetobacter
           radioresistens SH164]
 gi|255304350|gb|EET83534.1| putative protease SohB [Acinetobacter radioresistens SK82]
 gi|262299873|gb|EEY87785.1| signal peptide peptidase SppA, 36K type [Acinetobacter
           radioresistens SH164]
          Length = 320

 Score = 93.5 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 108/265 (40%), Gaps = 21/265 (7%)

Query: 32  EDNSPHVARIAIRGQIEDS--QELIERI------ERISRDDSATALIVSLSSPGGSAYAG 83
           + N+  +  I  +G ++ S  + L E I       +  +D     ++V L SPGG  +  
Sbjct: 53  KKNNQKIYVIDFKGDVQASAVENLREEITLILATAKAGKDR----VVVRLESPGGMVHGY 108

Query: 84  EAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                 + ++++    +   V ++AAS GY+++C +N I+ A  ++VGSIGV+ Q P   
Sbjct: 109 GLAAAQLVRLRDAGFHLTICVDKVAASGGYMMACIANEIITAPFAVVGSIGVVAQVPNFN 168

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L +  V  +   +   K   + F E  P+     +  +  ++  F   V + R  P  
Sbjct: 169 RLLKEHNVDFELYTAGEYKRTVTMFGENTPEGKAKFEQELQQTHALFKHFVEKYR--PKL 226

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               ++ G  W G +A  + L+D +   +E   S            +   +  +     +
Sbjct: 227 NVEKVATGEHWYGQDALDLNLVDELKTSDEYLLSAL------PQHDVYVISTRRKPTLGE 280

Query: 263 LKNLSISSLLEDTIPLMKQTKVQGL 287
              L  + + +  +P +    +  L
Sbjct: 281 KLGLQAAQMADALVPAVLNKVMDTL 305


>gi|300937014|ref|ZP_07151882.1| putative signal peptide peptidase SppA [Escherichia coli MS 21-1]
 gi|300457896|gb|EFK21389.1| putative signal peptide peptidase SppA [Escherichia coli MS 21-1]
          Length = 308

 Score = 93.5 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPEEIRQDMQQRIDAARRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|218689829|ref|YP_002398041.1| head-tail preconnector protein GP5 [Escherichia coli ED1a]
 gi|218427393|emb|CAR08290.2| Head-tail preconnector protein GP5 [Contains: Scaffold protein GP6
           (Head protein GP6)] [Escherichia coli ED1a]
          Length = 501

 Score = 93.5 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 89/217 (41%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPEEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
                ++  ++ G    + GL D +    +    + A
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMAA 291


>gi|188491998|ref|ZP_02999268.1| head-tail preconnector gp5 [Escherichia coli 53638]
 gi|188495988|ref|ZP_03003258.1| head-tail preconnector gp5 [Escherichia coli 53638]
 gi|188487197|gb|EDU62300.1| head-tail preconnector gp5 [Escherichia coli 53638]
 gi|188491187|gb|EDU66290.1| head-tail preconnector gp5 [Escherichia coli 53638]
          Length = 501

 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 89/216 (41%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + +   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 DHLAQAGVDITLIYAGSHKVDGNHFEALPAEVRQDMQQRIDAARRMFAEKVAMYTGLTVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
             +  ++  ++ G    + GL D +    +    + 
Sbjct: 256 AVMG-TEAAVFEGQTGIEAGLADELINASDAISVMA 290


>gi|320176913|gb|EFW51941.1| Head-tail preconnector protein GP5 [Shigella dysenteriae CDC
           74-1112]
          Length = 490

 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 89/216 (41%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + +   K + + F  +  +  Q MQ  +D+++  F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRIDAAHRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|187733565|ref|YP_001879921.1| head-tail preconnector protein GP5 [Shigella boydii CDC 3083-94]
 gi|187430557|gb|ACD09831.1| head-tail preconnector protein GP5 [Shigella boydii CDC 3083-94]
          Length = 501

 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 89/216 (41%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + +   K + + F  +  +  Q MQ  +D+++  F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRIDAAHRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|170717550|ref|YP_001784638.1| periplasmic protease [Haemophilus somnus 2336]
 gi|168825679|gb|ACA31050.1| Peptidase S49 domain protein [Haemophilus somnus 2336]
          Length = 352

 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 113/258 (43%), Gaps = 17/258 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
            E   PH+  +  +G I  S+      E+   I     DD    +++ L SPGG  +   
Sbjct: 99  AEKRKPHLFVLHFKGDISASETTALREEISAIIAVAKEDDE---VLLRLESPGGVVHGYG 155

Query: 85  AIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                + ++K R   +T  V ++AAS GY+++C ++ I++A  +++GSIGV+ Q P +  
Sbjct: 156 LAASQLARLKQRNIKLTVAVDKVAASGGYMMACVADKIISAPFAIIGSIGVVAQIPNIHR 215

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K  + +  + +   K   +   E   K     Q  ++ ++  F + V+++R  P+  
Sbjct: 216 LLKKHDIDVDVMTAGEYKRTMTILGENTEKGKAKFQQDLEDTHLLFKQFVTQNR--PHLD 273

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A  + L+D +   +++           S++ +      K      L
Sbjct: 274 IDKIATGEHWFGKQALALHLVDEIATSDDLLLQAIKDKTVLSVKYMM-----KKSLIQKL 328

Query: 264 KNLSISSLLEDTIPLMKQ 281
              +  S     + L+K+
Sbjct: 329 GKQAEESANNVLLRLLKR 346


>gi|218704576|ref|YP_002412095.1| Head-tail preconnector protein GP5 [Escherichia coli UMN026]
 gi|293404456|ref|ZP_06648450.1| scaffold protein GP6 [Escherichia coli FVEC1412]
 gi|298380232|ref|ZP_06989837.1| scaffold protein GP6 [Escherichia coli FVEC1302]
 gi|300895932|ref|ZP_07114503.1| putative signal peptide peptidase SppA [Escherichia coli MS 198-1]
 gi|218431673|emb|CAR12555.1| Head-tail preconnector protein GP5 [Contains: Scaffold protein GP6
           (Head protein GP6)] [Escherichia coli UMN026]
 gi|291429042|gb|EFF02067.1| scaffold protein GP6 [Escherichia coli FVEC1412]
 gi|298279930|gb|EFI21438.1| scaffold protein GP6 [Escherichia coli FVEC1302]
 gi|300360143|gb|EFJ76013.1| putative signal peptide peptidase SppA [Escherichia coli MS 198-1]
          Length = 482

 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 89/216 (41%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + +   K + + F  +  +  Q MQ  +D+++  F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRIDAAHRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|292488385|ref|YP_003531267.1| putative protease [Erwinia amylovora CFBP1430]
 gi|292899581|ref|YP_003538950.1| peptidase [Erwinia amylovora ATCC 49946]
 gi|291199429|emb|CBJ46546.1| putative peptidase [Erwinia amylovora ATCC 49946]
 gi|291553814|emb|CBA20859.1| putative protease [Erwinia amylovora CFBP1430]
 gi|312172528|emb|CBX80784.1| putative protease [Erwinia amylovora ATCC BAA-2158]
          Length = 349

 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 116/265 (43%), Gaps = 18/265 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           V    P +  I  +G ++  +      E+   +    + D    +++ L SPGG  +   
Sbjct: 96  VNGGKPTLYVIDFKGSMDAGEVSSLREEVSAVMAVAEKGDE---VLLRLESPGGVVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T  V ++AAS GY+++C ++ IVAA  S++GSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVAVDKVAASGGYMMACVADRIVAAPFSIIGSIGVVAQIPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L +  + ++   +   K   + F E   +  +  ++ ++ ++  F + V + R  P   
Sbjct: 213 LLKRNEIDVELHTAGEYKRTLTLFGENTEQGREKFREELNETHQLFKQFVHQMR--PTLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +G  +++              ++      +     D 
Sbjct: 271 IDSIATGEHWYGQQALEKGLVDAIGTSDDLIIDHIEKH------QVIGVRYARRKGMIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +S LE  +  + Q   + L 
Sbjct: 325 FTQSATSSLERLLLRIWQRGDKPLL 349


>gi|327253287|gb|EGE64936.1| head-tail preconnector protein GP5 [Escherichia coli STEC_7v]
          Length = 501

 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 89/216 (41%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D+++  F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQKRIDAAHRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|218700220|ref|YP_002407849.1| head-tail preconnector protein GP5 [Escherichia coli IAI39]
 gi|218370206|emb|CAR18001.1| Head-tail preconnector protein GP5 [Contains: Scaffold protein GP6
           (Head protein GP6)] [Escherichia coli IAI39]
          Length = 501

 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 90/217 (41%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + +   K + + F  +  +  Q MQ  VD+++  F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRVDAAHRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
                ++  ++ G    + GL D +    +    + A
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMAA 291


>gi|218694807|ref|YP_002402474.1| Head-tail preconnector protein GP5 [Contains: Scaffold protein GP6
           (Head protein GP6)] [Escherichia coli 55989]
 gi|218351539|emb|CAU97251.1| Head-tail preconnector protein GP5 [Contains: Scaffold protein GP6
           (Head protein GP6)] [Escherichia coli 55989]
          Length = 501

 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 90/217 (41%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + +   K + + F  +  +  Q MQ  +D+++  F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRIDAAHRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
                ++  ++ G    + GL D +    +    + A
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMAA 291


>gi|323962536|gb|EGB58116.1| peptidase S49 [Escherichia coli H489]
          Length = 501

 Score = 93.1 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 89/216 (41%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + +   K + + F  +  +  Q MQ  +D+++  F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRIDAAHRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|317485330|ref|ZP_07944210.1| peptidase family S49 [Bilophila wadsworthia 3_1_6]
 gi|316923456|gb|EFV44662.1| peptidase family S49 [Bilophila wadsworthia 3_1_6]
          Length = 401

 Score = 93.1 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 92/211 (43%), Gaps = 13/211 (6%)

Query: 38  VARIAIRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
           VA I + G I             +   ++    D SA A++  ++SPGG     + +  A
Sbjct: 47  VAVIPVSGAIVREQGWYGTGQDAVASSLKAALADPSARAILFDITSPGGVVAGTKELADA 106

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           I + + +K      + + ASA Y ++ A+  + A  T+ VGSIGV+          +K G
Sbjct: 107 IAEARTKKHCAAYANGLCASAAYWLASATGTVYAPLTATVGSIGVIMTITNYAKLEEKWG 166

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS- 208
           +S  ++     KA      E+  +  +  Q+ +++ +  F   V   R++       L  
Sbjct: 167 ISTVTITGGKWKAAGQ-GGELTDEERRYFQERINTLHQIFKADV--GRHMGLTADPQLWG 223

Query: 209 DGRIWTGAEAKKVGLI-DVVGGQEEVWQSLY 238
           + ++     A+++GL+ D+V  ++   + L 
Sbjct: 224 EAQLLLAQPARELGLVTDIVRDRDAAIRKLA 254


>gi|127513335|ref|YP_001094532.1| putative periplasmic protease [Shewanella loihica PV-4]
 gi|126638630|gb|ABO24273.1| Peptidase S49, N-terminal domain protein [Shewanella loihica PV-4]
          Length = 343

 Score = 93.1 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 109/282 (38%), Gaps = 16/282 (5%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60
           K+ K     L            +      +P V  I  +G I        +E I  I  I
Sbjct: 66  KQFKAYEKGLKAEAKAKEKAEKADGEAAPTPRVFVIDFKGSIDAHEVASLREEISAILAI 125

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASN 119
           +       ++V++ S GG  +        + +++    P+   V ++AAS GY+++C +N
Sbjct: 126 AE--PGDEVVVNVESGGGMVHGYGLAASQLDRLRSAEIPLTICVDKVAASGGYMMACVAN 183

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179
            I AA  ++VGSIGV+ Q P     L K  +  +   +   K   + F E   +  Q  Q
Sbjct: 184 TIYAAPFAIVGSIGVVAQIPNFNRLLKKHDIDYEQHTAGDFKRTLTLFGENTDEGRQKFQ 243

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
           + ++ ++  F   +S+ R  P      ++ G  W G +A  +GL+D +   ++V   L  
Sbjct: 244 EELEETHVLFKAFISKYR--PTLDIAKVATGEHWYGQQALDLGLVDGLSTSDDVVMKLAE 301

Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
                  + +            D    S S  +      + +
Sbjct: 302 ------EKTVIKVRYQLKKKIADKLAHSASLAVNAVFNRLAE 337


>gi|301017487|ref|ZP_07182178.1| putative signal peptide peptidase SppA [Escherichia coli MS 69-1]
 gi|300400179|gb|EFJ83717.1| putative signal peptide peptidase SppA [Escherichia coli MS 69-1]
          Length = 501

 Score = 93.1 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 89/216 (41%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + +   K + + F  +  +  Q MQ  +D+++  F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRIDAAHRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|251792473|ref|YP_003007199.1| putative periplasmic protease [Aggregatibacter aphrophilus NJ8700]
 gi|247533866|gb|ACS97112.1| S49 family peptidase [Aggregatibacter aphrophilus NJ8700]
          Length = 353

 Score = 93.1 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 111/265 (41%), Gaps = 18/265 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
            ++    +  +  +G I  ++      E+   I+    DD    +++ L SPGG  +   
Sbjct: 100 EDEQKTTLYVLNFKGDIAATETAALREEISAIIQTAKNDDE---VLLCLESPGGMVHGYG 156

Query: 85  AIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                + ++K     +T  V ++AAS GY+++C ++ I++A  +++GSIGV+ Q P V  
Sbjct: 157 LAASQLARLKQHGIKLTVAVDKVAASGGYMMACVADKIISAPFAVIGSIGVVAQIPNVHR 216

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K  V +  + +   K   +   E   K  Q  Q  +D ++  F + VS++R  P+  
Sbjct: 217 LLKKHDVDVDVMTAGEYKRTMTILGENTEKGKQKFQQELDETHQLFKQFVSQNR--PHLD 274

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A ++ L+D +   ++V             +++              
Sbjct: 275 VDSVATGEHWFGQQALQLNLVDEIMTSDDVLLQAIK------EKRVIGIKYSVKKSLLQK 328

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
               +    ++ +  + +     L 
Sbjct: 329 LGKQVEESADNLLLRLLKRNENNLM 353


>gi|120598431|ref|YP_963005.1| putative periplasmic protease [Shewanella sp. W3-18-1]
 gi|120558524|gb|ABM24451.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Shewanella sp.
           W3-18-1]
          Length = 338

 Score = 92.8 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 107/246 (43%), Gaps = 10/246 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGE 84
            +  + +   V  I  +G I+ ++   L E I  I    +    ++V++ S GG  +   
Sbjct: 84  KTEGDTSKGKVFVIDFKGSIDAAEVASLREEISAILAIAEKGDEVVVNVESGGGMVHGYG 143

Query: 85  AIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                + ++ +   P+   V ++AAS GY+++C +N I AA  ++VGSIGV+ Q P    
Sbjct: 144 LASSQLDRLRQADIPLTVCVDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQLPNFNR 203

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K  +  +   +   K   + F E   +  Q  Q+ ++ ++  F   VS+ R  P   
Sbjct: 204 LLKKHEIDYEQHTAGDFKRTLTVFGENTDEGRQKFQEELEETHVLFKAFVSKYR--PELN 261

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A ++GL+D +   ++V  SL        +     +   K       
Sbjct: 262 LEKVATGEHWYGQQAIELGLVDEILTSDDVVMSLAKDRKVYKL----RYQVKKKLADKIA 317

Query: 264 KNLSIS 269
              S+S
Sbjct: 318 HGASLS 323


>gi|26247317|ref|NP_753357.1| putative capsid assembly protein of prophage [Escherichia coli
           CFT073]
 gi|26107718|gb|AAN79917.1|AE016759_191 Putative capsid assembly protein of prophage [Escherichia coli
           CFT073]
          Length = 501

 Score = 92.8 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + +   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|18314240|ref|NP_560907.1| protease IV, conjectural [Pyrobaculum aerophilum str. IM2]
 gi|18161836|gb|AAL65089.1| protease IV, conjectural [Pyrobaculum aerophilum str. IM2]
          Length = 608

 Score = 92.8 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 102/266 (38%), Gaps = 18/266 (6%)

Query: 29  SHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
                    +  + +   I D     LI+ ++++  D+    +I+ ++SPGG+  A E +
Sbjct: 78  EKRAAAEREIVIVPVDQPIFDYYVDFLIKYVKKLQFDNKTAGVILLINSPGGAVGATERL 137

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
           +  I+ +   K V   V  +AAS  Y  + A+  I A  +S VGSIGV+      +  +D
Sbjct: 138 YSTIKGL--NKTVYAVVAGLAASGAYYTAVAAGRIYATPSSWVGSIGVVALLWPDEYLID 195

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
              +      + P K             +    + ++ +   FV  V + R         
Sbjct: 196 ---LPDYIYTTGPFKYYGM--------DLTEFYNDIEKTRANFVAAVLKGRAGRLKADPE 244

Query: 207 LS-DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
           +    +I+    A ++GLID +GG  +  + +      ++   +  +       F  +  
Sbjct: 245 VFETAKIFNAETALRLGLIDKIGGLWDAVEDMARELGLKNYTVVDIYEKYNATGFGIVVP 304

Query: 266 LSISSLLEDTIPLMKQTKVQGLWAVW 291
           L   + +   +  +       ++ +W
Sbjct: 305 LISGNKIP--LQFLMNVSAPPVFYLW 328


>gi|315295105|gb|EFU54440.1| putative signal peptide peptidase SppA [Escherichia coli MS 153-1]
          Length = 501

 Score = 92.8 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|91793823|ref|YP_563474.1| putative periplasmic protease [Shewanella denitrificans OS217]
 gi|91715825|gb|ABE55751.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Shewanella
           denitrificans OS217]
          Length = 337

 Score = 92.8 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 108/260 (41%), Gaps = 14/260 (5%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGS 79
           +     E     V  I  +G I+ ++      E+   +     DD    +IV++ S GG 
Sbjct: 81  AKEKQDEVKQATVFVIDFKGSIDANEVSSLREEITAILTIAEADDE---VIVNVESGGGM 137

Query: 80  AYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +        + +++      +    ++AAS GY+++C +N I AA  ++VGSIGV+ Q 
Sbjct: 138 VHGYGLAASQLDRLRQANIKFSVCIDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQL 197

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P     L K  +  +   +   K   + F +   +     Q  ++ ++  F   V + R 
Sbjct: 198 PNFHRLLQKHDIDYEQHTAGDFKRTLTLFGQNTQEGRDKFQQELEETHVLFKSFVGQYR- 256

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P      ++ G  W G +A ++GLID +   ++V  +L        ++         + 
Sbjct: 257 -PEMDIAKVATGEHWYGQQAIELGLIDAISTSDDVLLNLAKEHRVIKVKY--QIKKKLSD 313

Query: 259 WFCDLKNLSISSLLEDTIPL 278
                 +LS+SS++   + +
Sbjct: 314 KLAHGVSLSVSSIVNRLMEI 333


>gi|315285962|gb|EFU45400.1| putative signal peptide peptidase SppA [Escherichia coli MS 110-3]
          Length = 494

 Score = 92.8 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|331673505|ref|ZP_08374273.1| head-tail preconnector protein GP5 [Escherichia coli TA280]
 gi|331069703|gb|EGI41090.1| head-tail preconnector protein GP5 [Escherichia coli TA280]
          Length = 492

 Score = 92.8 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 89/227 (39%), Gaps = 14/227 (6%)

Query: 35  SPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
              +A + + G              +     L  R++    D     +++ + SPGG A 
Sbjct: 75  KNGIAILPVSGTLVHKLGTLRPYSGMTGYDGLTARLQMAVNDPDVRGILLDIDSPGGQAA 134

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                   I +++ +KPV    ++MA SA  L++ A    +  +T+ +GSIGV+  +   
Sbjct: 135 GAFDCADMIYRLREQKPVWALCNDMACSAAMLLAAACTHRLVTQTAKIGSIGVMMAHTSY 194

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
           +  L + GV I  + S   K + +    +        Q  +D +   FV  V+    +  
Sbjct: 195 EKQLAQEGVDITLIYSGQHKVDGNSIQALPAGVRADFQRRIDEARRMFVDKVARYTGLSS 254

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           +  +  ++  ++ G      GL D +    +  + + +   D   ++
Sbjct: 255 EAVMN-TEAAVYDGQAGIDAGLADQLINAADAVEVMVSALNDSVTKE 300


>gi|300973765|ref|ZP_07172333.1| putative signal peptide peptidase SppA [Escherichia coli MS 45-1]
 gi|300410689|gb|EFJ94227.1| putative signal peptide peptidase SppA [Escherichia coli MS 45-1]
          Length = 391

 Score = 92.8 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|91210342|ref|YP_540328.1| bacteriophage head-tail preconnector protein gp5 [Escherichia coli
           UTI89]
 gi|117623353|ref|YP_852266.1| head-tail preconnector protein gp5 of bacteriophage [Escherichia
           coli APEC O1]
 gi|218558060|ref|YP_002390973.1| head-tail preconnector protein GP5 [Escherichia coli S88]
 gi|549296|sp|P36273|VG05_BPP21 RecName: Full=Head-tail preconnector protein GP5; AltName:
           Full=Putative peptidase GP5; Contains: RecName:
           Full=Scaffold protein GP6; AltName: Full=Head protein
           GP6
 gi|423861|pir||JN0539 head protein gp5 - phage 21
 gi|215459|gb|AAA32343.1| head-tail preconnector gp5 [Phage 21]
 gi|91071916|gb|ABE06797.1| head-tail preconnector protein gp5 of bacteriophage [Escherichia
           coli UTI89]
 gi|115512477|gb|ABJ00552.1| head-tail preconnector protein gp5 of bacteriophage [Escherichia
           coli APEC O1]
 gi|218364829|emb|CAR02521.1| Head-tail preconnector protein GP5 [Contains: Scaffold protein GP6
           (Head protein GP6)] [Escherichia coli S88]
 gi|307627348|gb|ADN71652.1| Head-tail preconnector protein GP5 (Contains: Scaffold protein GP6
           (Head protein GP6)) [Escherichia coli UM146]
 gi|323953610|gb|EGB49475.1| peptidase S49 [Escherichia coli H252]
          Length = 501

 Score = 92.8 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|321272257|gb|ADW80142.1| phage minor capsid protein [Wolbachia endosymbiont wVitA of Nasonia
           vitripennis phage WOVitA1]
          Length = 343

 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 59/265 (22%), Positives = 114/265 (43%), Gaps = 14/265 (5%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQELIE 55
           +  + +LSL       F  S +   N   +A I I G              +   + + E
Sbjct: 11  RRSFELLSLYNSKQPIFKNSKYFHINPKGIAIIRIYGVLTKKTEAFDHILDMTSYENIHE 70

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
            IE    D S   +++ + SPGG       +   I   + +K +I   ++ A SA Y I+
Sbjct: 71  EIESALEDKSIETILLDIDSPGGEVNGVFDLADFIYSARGKKRIIAIANDDAYSAAYAIA 130

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            ++  +  + TS VGSIGV+  +     F +K G+   ++ +   K + +P  ++  +++
Sbjct: 131 SSAEKVFVSRTSGVGSIGVIASHIDQSRFDEKQGIKYTTIFAGSRKNDLNPHEQMTSESL 190

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           + +Q  VD  Y  FV+L++ +RN+          G  + G +A ++GL D V    E   
Sbjct: 191 ESLQKEVDRLYEMFVQLIARNRNLSIQAIKSTEAGLYF-GEKAVEIGLADGVTTFFEFIN 249

Query: 236 SLYALGVDQSIRKIKDWNPPKNYWF 260
           +  +  V  +  ++ + N  +    
Sbjct: 250 NHKSRSVSMTTDELIEENYRREILE 274


>gi|26247441|ref|NP_753481.1| putative capsid assembly protein of prophage [Escherichia coli
           CFT073]
 gi|227886459|ref|ZP_04004264.1| head-tail preconnector protein gp5 of bacteriophage [Escherichia
           coli 83972]
 gi|300992399|ref|ZP_07179897.1| putative signal peptide peptidase SppA [Escherichia coli MS 200-1]
 gi|301046454|ref|ZP_07193609.1| putative signal peptide peptidase SppA [Escherichia coli MS 185-1]
 gi|26107842|gb|AAN80041.1|AE016759_315 Putative capsid assembly protein of prophage [Escherichia coli
           CFT073]
 gi|227836663|gb|EEJ47129.1| head-tail preconnector protein gp5 of bacteriophage [Escherichia
           coli 83972]
 gi|300301568|gb|EFJ57953.1| putative signal peptide peptidase SppA [Escherichia coli MS 185-1]
 gi|300305350|gb|EFJ59870.1| putative signal peptide peptidase SppA [Escherichia coli MS 200-1]
 gi|307553180|gb|ADN45955.1| head-tail preconnector protein gp5 of bacteriophage [Escherichia
           coli ABU 83972]
          Length = 501

 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|297748624|gb|ADI51170.1| protease IV [Chlamydia trachomatis D-EC]
 gi|297749504|gb|ADI52182.1| protease IV [Chlamydia trachomatis D-LC]
          Length = 346

 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 110/274 (40%), Gaps = 14/274 (5%)

Query: 30  HVEDNSPHVARIAIRGQIEDS-------QELIERIERISRDDSATALIVSLSSPGGSAYA 82
            +   +P +A I I   I  S       Q  ++ +           ++V +  PGG  + 
Sbjct: 72  ELGKTAPIIAVIDINDAIMASGGAAKRLQSALQPLNEAPYKGRVKGILVKIDCPGGEVFE 131

Query: 83  GEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYP 139
            + +   +   K +   PV   V  + AS GY ++C ++ I    +SL+GSIGV    Y 
Sbjct: 132 IDRMCATLSFWKKQWGIPVHVFVSGLCASGGYYVACIADKIGTTSSSLIGSIGVRSGPYF 191

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-N 198
            VK  L + GV    + +   KA  +PFS    +     Q +VD+ Y  FV  V + R  
Sbjct: 192 SVKEGLQRHGVETAILTAGDDKAPLNPFSSWTEEEYAERQGIVDAFYEQFVDHVVKYRSK 251

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           +  +K   +   R++   +A + GL+D +   QE+  + L      +   ++        
Sbjct: 252 LSKEKLTKVLGARVFIAKQALEEGLVDAINQTQEQALEELAEACGIKDNYRVIGLG--SG 309

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
           ++     +   +S L      +     Q   ++W
Sbjct: 310 HFLKRFSSYLSNSPLVTGKLQVTALPDQQQKSLW 343


>gi|117623499|ref|YP_852412.1| putative capsid assembly protein of prophage [Escherichia coli APEC
           O1]
 gi|218558219|ref|YP_002391132.1| head-tail preconnector protein GP5 [Escherichia coli S88]
 gi|115512623|gb|ABJ00698.1| putative capsid assembly protein of prophage [Escherichia coli APEC
           O1]
 gi|218364988|emb|CAR02692.1| Head-tail preconnector protein GP5 [Contains: Scaffold protein GP6
           (Head protein GP6)] [Escherichia coli S88]
 gi|323949753|gb|EGB45638.1| peptidase S49 [Escherichia coli H252]
          Length = 501

 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|323186697|gb|EFZ72020.1| head-tail preconnector protein GP5 [Escherichia coli RN587/1]
          Length = 501

 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 87/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG    
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQVAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELVNASDAISVMA 290


>gi|260856233|ref|YP_003230124.1| putative head protein/prohead protease [Escherichia coli O26:H11
           str. 11368]
 gi|260866916|ref|YP_003233318.1| putative head protein/prohead protease [Escherichia coli O111:H-
           str. 11128]
 gi|257754882|dbj|BAI26384.1| putative head protein/prohead protease [Escherichia coli O26:H11
           str. 11368]
 gi|257763272|dbj|BAI34767.1| putative head protein/prohead protease [Escherichia coli O111:H-
           str. 11128]
 gi|323156570|gb|EFZ42718.1| head-tail preconnector GP5 [Escherichia coli EPECa14]
          Length = 501

 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|323977132|gb|EGB72219.1| peptidase S49 [Escherichia coli TW10509]
          Length = 501

 Score = 92.4 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + +   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|331650031|ref|ZP_08351104.1| head-tail preconnector protein GP5 [Escherichia coli M605]
 gi|331040976|gb|EGI13133.1| head-tail preconnector protein GP5 [Escherichia coli M605]
          Length = 501

 Score = 92.4 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 87/217 (40%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D S   +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVTCLQQAMADTSVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++MA SA  L++ A +  +  +T+  GSIGV+  +   +
Sbjct: 136 AFDCADMIYRLREQKPVWALCNDMACSAAMLLAAACSRRLITQTAKTGSIGVMMAHTSYE 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + +    +        Q  +D +   F   V+    +  D
Sbjct: 196 KQLAQDGVDITLIYSGQRKVDGNSIQALPAGVRADFQQRIDEARRMFAEKVAIYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +  ++  ++ G    + GL D +    +    + A
Sbjct: 256 AVME-TEAAVFDGQSGIEAGLADELINASDAIDVMAA 291


>gi|311694855|gb|ADP97728.1| capsid protein of prophage [marine bacterium HP15]
          Length = 441

 Score = 92.4 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 96/229 (41%), Gaps = 19/229 (8%)

Query: 26  SWSSHVEDNSPH-----VARIAIRGQ-------------IEDSQELIERIERISRDDSAT 67
           S+ S    N P+     +A I + G              +     +I R+E    D +  
Sbjct: 57  SFGSDRPRNRPYEVLNGIALIPVAGTLVHKFGHLQPYSGMTGYDGIIARVEEALADPTVN 116

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
            +++ + +PGG         R + +++ +KP+ +  ++MA SAG  +  A++      ++
Sbjct: 117 GILLDMDTPGGEVAGCFDTARRLNELRGQKPIASISYDMACSAGMALHSATDYRYTTTSA 176

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
             GS+GV+  +   +  L   G+ +  + S   K + +P+  +  + +   Q   D   +
Sbjct: 177 RTGSVGVVMMHASFEEQLKANGIDVTLIHSGAFKVDGNPYENLPEQVLARFQAESDRLRN 236

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
            F  +V+    +     L  ++  I+TG +A + G  D +    ++  +
Sbjct: 237 EFADMVATHIGLSASDVLA-TEAAIYTGQDAIEAGFADELINGHDMLAA 284


>gi|197261841|ref|ZP_03161915.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197240096|gb|EDY22716.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
          Length = 498

 Score = 92.4 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 86/217 (39%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +  R+++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHKLGGMRPFSGMTGYDGITARLQQAVSDPEVKGILLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    +E A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRMREQKPVWALANETACSAAMLLAAACSHRLVTQTSRMGSIGVVMAHTSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + G+ I  + S   KA+ +P  ++        Q  +D +   F   V+    +  D
Sbjct: 196 EKLKQEGIDITLIYSGAHKADLTPSQKLPESVHADYQQRMDEARKMFAEKVARYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +  ++  ++ G      GL D +    +    +  
Sbjct: 256 AVMA-TEAAVYDGQAIITTGLADGMVNAADAIGVMAE 291


>gi|113460984|ref|YP_719051.1| putative periplasmic protease [Haemophilus somnus 129PT]
 gi|112823027|gb|ABI25116.1| inner membrane peptidase, Serine peptidase, MEROPS family S49
           [Haemophilus somnus 129PT]
          Length = 347

 Score = 92.4 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 113/258 (43%), Gaps = 17/258 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
            E   PH+  +  +G I  S+      E+   I     DD    +++ L SPGG  +   
Sbjct: 94  AEKRKPHLFVLHFKGDISASETTALREEISAIIAVAKEDDE---VLLRLESPGGVVHGYG 150

Query: 85  AIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                + ++K R   +T  V ++AAS GY+++C ++ I++A  +++GSIGV+ Q P +  
Sbjct: 151 LAASQLARLKQRNIKLTVAVDKVAASGGYMMACVADKIISAPFAIIGSIGVVAQIPNIHR 210

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K  + +  + +   K   +   E   K     Q  ++ ++  F + V+++R  P+  
Sbjct: 211 LLKKHDIDVDVMTAGEYKRTMTILGENTEKGKAKFQQDLEDTHLLFKQFVTQNR--PHLD 268

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A  + L+D +   +++           S++ +      K      L
Sbjct: 269 IDKIATGEHWFGKQALALHLVDEIATSDDLLLQAIKGKTVLSVKYMM-----KKSLIQKL 323

Query: 264 KNLSISSLLEDTIPLMKQ 281
              +  S     + L+K+
Sbjct: 324 GKQAEESANNVLLRLLKR 341


>gi|320194291|gb|EFW68922.1| Head-tail preconnector protein GP5 [Escherichia coli WV_060327]
          Length = 501

 Score = 92.4 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELVNASDAISVMA 290


>gi|323186751|gb|EFZ72073.1| head-tail preconnector protein GP5 [Escherichia coli RN587/1]
          Length = 501

 Score = 92.4 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + +   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELVNASDAISVMA 290


>gi|294141564|ref|YP_003557542.1| sohB protein, peptidase U7 family [Shewanella violacea DSS12]
 gi|293328033|dbj|BAJ02764.1| sohB protein, peptidase U7 family [Shewanella violacea DSS12]
          Length = 343

 Score = 92.4 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 103/239 (43%), Gaps = 10/239 (4%)

Query: 35  SPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
            P V  +  +G I+ S+   L E I  I    +    +IV++ S GG  +        + 
Sbjct: 95  DPRVFVVDFKGSIDASEVASLREEISAILAIAEKGDEVIVTVESGGGMVHGYGLASSQLD 154

Query: 92  KV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++ +    +   V ++AAS GY+++C +N + AA  ++VGSIGV+ Q P     L K  +
Sbjct: 155 RLRQADIHLTICVDKVAASGGYMMACVANKVYAAPFAIVGSIGVVAQIPNFHKLLKKHDI 214

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
             +   +   K   + F E   +     Q  ++ ++  F + +++ R  P      ++ G
Sbjct: 215 DYEQHTAGDFKRTLTLFGENTDEGRAKFQTELEETHVLFKQFIAKYR--PELDLDKVATG 272

Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
             W G +A ++GLID +   ++V   L              +   KN+        S+S
Sbjct: 273 EHWYGQQAIELGLIDGISTSDDVVMKLAKERTVIK----VRYQLKKNFADKIAHGASLS 327


>gi|200390897|ref|ZP_03217508.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|199603342|gb|EDZ01888.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 498

 Score = 92.4 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 86/217 (39%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +  R+++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHKLGGMRPFSGMTGYDGITARLQQAVSDPEVKGILLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    +E A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRMREQKPVWALANETACSAAMLLAAACSHRLVTQTSRMGSIGVVMAHTSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + G+ I  + S   KA+ +P  ++        Q  +D +   F   V+    +  D
Sbjct: 196 EKLKQEGIDITLIYSGAHKADLTPSQKLPESVHADYQQRMDEARKMFAVKVARYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +  ++  ++ G      GL D +    +    +  
Sbjct: 256 AVMA-TEAAVYDGQAIITTGLADGMVNAADAIGVMAE 291


>gi|315634187|ref|ZP_07889476.1| protease SohB [Aggregatibacter segnis ATCC 33393]
 gi|315477437|gb|EFU68180.1| protease SohB [Aggregatibacter segnis ATCC 33393]
          Length = 352

 Score = 92.4 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 113/264 (42%), Gaps = 17/264 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80
                 +  P +  +  +G I  S+      E+   ++    +D    +++ L SPGG  
Sbjct: 95  GEDTESERKPSLYVLHFKGDISASETAALREEISAIVQVAKPNDE---VLLCLESPGGVV 151

Query: 81  YAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +        + ++K     +T  V ++AAS GY+++C ++ IV+A  +++GSIGV+ Q P
Sbjct: 152 HGYGLAASQLMRLKQHNIKLTVAVDKVAASGGYMMACVADKIVSAPFAIIGSIGVVAQIP 211

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            +   L K  V +  + +   K   +   E   K  Q  Q  ++ ++  F + VS++R  
Sbjct: 212 NIHRLLKKHDVDVDVMTAGEYKRTVTMLGENTEKGKQKFQQELEETHQLFKQFVSQNR-- 269

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           P+     ++ G  W G +A  + L+D +   +++            ++ +      K   
Sbjct: 270 PHLDVEQVATGEHWFGQQALNLNLVDEIMTSDDLLLQAMKEKQLIGVKYVV-----KKSL 324

Query: 260 FCDLKNLSISSLLEDTIPLMKQTK 283
              +   +  S+    +  +K+ +
Sbjct: 325 LQKVGKQAEESVDNIALRWLKKNE 348


>gi|119872893|ref|YP_930900.1| peptidase S49 [Pyrobaculum islandicum DSM 4184]
 gi|119674301|gb|ABL88557.1| peptidase S49 [Pyrobaculum islandicum DSM 4184]
          Length = 550

 Score = 92.0 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 106/278 (38%), Gaps = 28/278 (10%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQIED--SQELIERIERISRD 63
               + + +  L  V++             P +  +++   I    + +L++ +  +S+ 
Sbjct: 10  IALALAIGVAALFAVFYICQPKPAAPQPVKPKIVLVSVDFVIGGPETDKLVKALTELSQR 69

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
           D    +++ ++SPGG+    E ++  +  +   K  +     + AS  Y  + A+  I A
Sbjct: 70  DDVAGIVLVINSPGGTVSGTETLYTTLLGLNKTKYAVIVG--LGASGAYYTAVAAERIYA 127

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
           A +S VGSIGV+         L     +     + P+K             +    D V+
Sbjct: 128 APSSWVGSIGVVAVIWPD---LYLYDAADYIYTTGPLKYYGE--------DLHGYYDDVE 176

Query: 184 SSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
                FV  V   R          L    ++T  EA K+GL+D +GG  +  + +     
Sbjct: 177 KIRQNFVEAVLRGRAGRIKADPAVLETAGLFTAEEALKLGLVDKIGGVLDAARDMAEELG 236

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            ++   +         +  DL N++ ++     +PL +
Sbjct: 237 LRNYSLV---------YLGDLMNMTAAAASAWRVPLSQ 265


>gi|156358147|ref|XP_001624386.1| predicted protein [Nematostella vectensis]
 gi|156211161|gb|EDO32286.1| predicted protein [Nematostella vectensis]
          Length = 445

 Score = 92.0 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 58/267 (21%), Positives = 109/267 (40%), Gaps = 21/267 (7%)

Query: 35  SPHVARIAIRGQIEDSQE---------LIERIERISRDDSA--TALIVSLSSPGGSAYAG 83
              V  I ++G I  S           + + I+R          A+ + ++S GGS    
Sbjct: 178 KNVVRIIRLQGIINASSSNHRALSLRRVEKAIDRAFEVKKVAPKAVCLEINSTGGSPVQS 237

Query: 84  EAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
             I+  I++  N K  PV++ V + A S GY +S A + I     S VGSIG +     V
Sbjct: 238 NLIYTRIREQANDKKIPVLSFVEDHALSGGYWLSLAGDEIFVDPNSAVGSIGAVSSNVGV 297

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              + KLG+  + V     K   +P   + P+ V+ ++ ++   ++ F+ LV E R    
Sbjct: 298 VEAMKKLGLEYRPVVMGEHKVRMNPMEPLKPEDVEWVKKILAEVHNNFIDLVKERRTKLD 357

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN--PPKNYW 259
             +  +  G I+ G EA ++GL+D +         L +L   +    +       P++++
Sbjct: 358 TTSKTVFSGDIFLGKEAVRIGLVDAITT------DLKSLCKKRFGEDVVFERCDLPQDFF 411

Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQG 286
              +          +    +    ++G
Sbjct: 412 TRMMNKRFGMEASINVDEALDSLAIRG 438


>gi|331666075|ref|ZP_08366969.1| head-tail preconnector protein GP5 [Escherichia coli TA143]
 gi|331057126|gb|EGI29120.1| head-tail preconnector protein GP5 [Escherichia coli TA143]
          Length = 501

 Score = 92.0 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 87/212 (41%), Gaps = 14/212 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
                ++  ++ G    + GL D +    +  
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAI 286


>gi|300918442|ref|ZP_07135040.1| putative signal peptide peptidase SppA [Escherichia coli MS 115-1]
 gi|300414417|gb|EFJ97727.1| putative signal peptide peptidase SppA [Escherichia coli MS 115-1]
          Length = 445

 Score = 92.0 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 90/217 (41%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++   D     +++ + +PGG    
Sbjct: 82  NGIAVLPVSGTLVSKTRSLQPYSGMTGYNGIIARLQQAISDPGVDGILLDMDTPGGMVAG 141

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I ++++ KP+    ++M  SAG LI+ A++  +  +T+  GSIGV+  +    
Sbjct: 142 AFDCADIIARMRDIKPIWALANDMNCSAGQLIASAASRRLVTQTARTGSIGVMMAHSNYG 201

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L   GV +  + S   K + +P+ ++  +     Q  +D++   F   V+    +   
Sbjct: 202 AALKTSGVEVTLIYSGDHKVDGNPYEKLPKEVRADFQARIDATRQMFAEKVAGYTGMSVQ 261

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             L  ++  +++G E+   GL + +    +    +  
Sbjct: 262 AVLD-TEAAVFSGQESVDNGLAEQLVNNMDALNVMRD 297


>gi|267993060|gb|ACY87945.1| prophage head-tail preconnector [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|267994733|gb|ACY89618.1| head-tail preconnector-like protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
          Length = 498

 Score = 92.0 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 86/217 (39%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +  R+++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHKLGGMRPFSGMTGYDGITARLQQAVSDPEVKGILLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    +E A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMICRMREQKPVWALANETACSAAMLLAAACSHRLVTQTSRMGSIGVVMAHTSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + G+ I  + S   KA+ +P  ++        Q  +D +   F   V+    +  D
Sbjct: 196 EKLKQEGIDITLIYSGAHKADLTPSQKLPESVHADYQQRMDEARKMFAEKVARYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +  ++  ++ G      GL D +    +    +  
Sbjct: 256 AVMA-TEAAVYDGQAIITTGLADGMVNAADAIGVMAE 291


>gi|146293490|ref|YP_001183914.1| putative periplasmic protease [Shewanella putrefaciens CN-32]
 gi|145565180|gb|ABP76115.1| Peptidase S49, N-terminal domain protein [Shewanella putrefaciens
           CN-32]
 gi|319426794|gb|ADV54868.1| Peptidase S49 domain protein [Shewanella putrefaciens 200]
          Length = 338

 Score = 92.0 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 106/246 (43%), Gaps = 10/246 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGE 84
            +  + +   V  I  +G I+ ++   L E I  I    +    ++V++ S GG  +   
Sbjct: 84  KTEGDTSKGKVFVIDFKGSIDAAEVASLREEISAILAIAEKGDEVVVNVESGGGMVHGYG 143

Query: 85  AIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                + ++ +    +   V ++AAS GY+++C +N I AA  ++VGSIGV+ Q P    
Sbjct: 144 LASSQLDRLRQADILLTVCVDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQLPNFNR 203

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K  +  +   +   K   + F E   +  Q  Q+ ++ ++  F   VS+ R  P   
Sbjct: 204 LLKKHEIDYEQHTAGDFKRTLTVFGENTDEGRQKFQEELEETHVLFKAFVSKYR--PELN 261

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A ++GL+D +   ++V  SL        +     +   K       
Sbjct: 262 LEKVATGEHWYGQQAIELGLVDEILTSDDVVMSLAKDRKVYKL----RYQVKKKLADKIA 317

Query: 264 KNLSIS 269
              S+S
Sbjct: 318 HGASLS 323


>gi|193070040|ref|ZP_03050987.1| head-tail preconnector protein GP5 [Escherichia coli E110019]
 gi|192956637|gb|EDV87093.1| head-tail preconnector protein GP5 [Escherichia coli E110019]
          Length = 501

 Score = 92.0 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELVNASDAISVMA 290


>gi|193062745|ref|ZP_03043839.1| head-tail preconnector protein GP5 [Escherichia coli E22]
 gi|192931867|gb|EDV84467.1| head-tail preconnector protein GP5 [Escherichia coli E22]
          Length = 538

 Score = 92.0 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 89/227 (39%), Gaps = 14/227 (6%)

Query: 35  SPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
              +A + + G              +     L  R++    D     +++ + SPGG A 
Sbjct: 75  KNGIAILPVSGTLVHKLGTLRPYSGMTGYDGLTARLQMAVNDPDVRGILLDIDSPGGQAA 134

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                   I +++ +KPV    ++MA SA  L++ A    +  +T+ +GSIGV+  +   
Sbjct: 135 GAFDCADMIYRLREQKPVWALCNDMACSAAMLLAAACTRRLVTQTAKIGSIGVMMAHTSY 194

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
           +  L + GV I  + S   K + +    +        Q  +D +   FV  V+    +  
Sbjct: 195 EKQLAQEGVDITLIYSGQHKVDGNSIQALPAGVRADFQRRIDEARRMFVDKVALYTGLSS 254

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           +  +  ++  ++ G      GL D +    +  + + +   D   ++
Sbjct: 255 EAVMN-TEAAVYDGQAGIDAGLADQLINAADAVEVMVSALNDSVTKE 300


>gi|312968745|ref|ZP_07782953.1| putative head-tail preconnector protein [Escherichia coli 2362-75]
 gi|312286598|gb|EFR14510.1| putative head-tail preconnector protein [Escherichia coli 2362-75]
          Length = 501

 Score = 92.0 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 86/216 (39%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSI V+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIDVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G      GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIDAGLADELVNASDAISVMA 290


>gi|52425201|ref|YP_088338.1| putative periplasmic protease [Mannheimia succiniciproducens
           MBEL55E]
 gi|52307253|gb|AAU37753.1| SppA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 353

 Score = 92.0 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 110/260 (42%), Gaps = 12/260 (4%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERISR--DDSATALIVSLSSPGGSAYA 82
                E   P V  +  +G I  S+   L E I  I    + +   +++ L SPGG  + 
Sbjct: 95  GEKTEESLKPCVYVMDFKGDIRASETAALREEISAILNVANPATDEVLLRLESPGGVVHG 154

Query: 83  GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + ++K +   +T  V ++AAS GY+++C ++ IVAA  +++GSIGV+ Q P +
Sbjct: 155 YGLAASQLARLKQKGIKLTVAVDKVAASGGYMMACVADKIVAAPFAVIGSIGVVAQVPNI 214

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  V +  + +   K   +   E   K  Q  Q  ++ ++  F + V+ +R  P 
Sbjct: 215 HRLLKKHDVDVDVMTAGEYKRTVTFVGENTEKGKQKFQQELEETHDLFKQFVTANR--PL 272

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +A  + L+D +   +++            ++        K     
Sbjct: 273 VDIDKIATGEHWFGQQALALNLVDEIATSDDLILDAMQDKSVIGVKYAV-----KKSLIQ 327

Query: 262 DLKNLSISSLLEDTIPLMKQ 281
            L   +  S  +  +  +KQ
Sbjct: 328 KLGKQAEESSDKLLLKWLKQ 347


>gi|240850472|ref|YP_002971870.1| phage protein Gp18 [Bartonella grahamii as4aup]
 gi|240267595|gb|ACS51183.1| phage protein Gp18 [Bartonella grahamii as4aup]
          Length = 351

 Score = 92.0 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 86/220 (39%), Gaps = 16/220 (7%)

Query: 35  SPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
             ++A I + G +                + L              A+++ + S GG A 
Sbjct: 59  QNNIAIIPVHGTLVRRGAWLGALSGLTSYEGLGASFREAIAQPDVRAVLLDIDSGGGEAG 118

Query: 82  AGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
               +    Q +  +  KP+    +E A SA Y I+C+++ I  A T +VGSIGV+  + 
Sbjct: 119 GVFDLVEEFQALSKKYDKPIWAHANEFACSAAYAIACSASQIWVARTGVVGSIGVVCAHL 178

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                 +K G     V     K   +P   ++  A   MQ      Y  FV LV+++R +
Sbjct: 179 DQSRADEKHGHKWTFVFEGDHKVHGNPHEPLSDTAQIKMQADCALLYEMFVDLVAQNRRL 238

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             D          + G++A  +GL D  G   +  ++L  
Sbjct: 239 NADAIRDTK-AETFIGSQAITLGLADAQGTLAQALEALTD 277


>gi|168264539|ref|ZP_02686512.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|205347014|gb|EDZ33645.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
          Length = 498

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 86/217 (39%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +  R+++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHKLGGMRPFSGMTGYDGVTARLQQAVSDPEVKGILLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    +E A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRMREQKPVWALANETACSAAMLLAAACSHRLVTQTSRMGSIGVVMAHTSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + G+ I  + S   KA+ +P  ++        Q  +D +   F   V+    +  D
Sbjct: 196 EKLKQEGIDITLIYSGAHKADLTPSQKLPESVHADYQQRMDEARKMFAEKVARYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +  ++  ++ G      GL D +    +    +  
Sbjct: 256 AVMA-TEAAVYDGQAIITTGLADGMVNAADAIGVMAE 291


>gi|226940574|ref|YP_002795648.1| Periplasmic serine proteases (ClpP class) [Laribacter hongkongensis
           HLHK9]
 gi|226715501|gb|ACO74639.1| Periplasmic serine proteases (ClpP class) [Laribacter hongkongensis
           HLHK9]
          Length = 421

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 14/224 (6%)

Query: 32  EDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGG 78
           +  S  VA I + G              +     +   +    RD    A+++ + SPGG
Sbjct: 68  QLTSAGVAVIPVMGPLMQRGSWLDAMCGMTSYDRVNALVSAAMRDQDVRAVLLEIDSPGG 127

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
                 A+   ++     KPV    +E A SA Y I+ + + +    T++VGSIGV+  +
Sbjct: 128 EVAGLFALCDRLKAAATSKPVWAYANEAACSAAYAIASSVDRLYLPRTAMVGSIGVIAMH 187

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                     G +   V +   KA+ +  + ++ +A   +Q  +D  Y  FV  V+  R 
Sbjct: 188 VDQSARDATQGYTYTPVFAGDKKADGNSHAPLSDRARTTLQTEIDRLYSMFVDHVATGRR 247

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           +     +    G       A      D +   +EV   L     
Sbjct: 248 LEKQAVIDTQAGL-LNADAAVAGQFADGIASFDEVLAQLADTAK 290


>gi|76802382|ref|YP_327390.1| signal peptide peptidase [Natronomonas pharaonis DSM 2160]
 gi|76558247|emb|CAI49835.1| probable signal peptide peptidase [Natronomonas pharaonis DSM 2160]
          Length = 315

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 89/239 (37%), Gaps = 21/239 (8%)

Query: 10  TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSAT 67
              V+L++    +      S V D+   V  I ++G IE   +Q++ +++    +DD+  
Sbjct: 16  ALVVLLAIAAGVLAAPQVYSFVADDGDTVVVIEMQGPIETNMAQDVEDQLRDARQDDAVE 75

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           A+++ + S GG     E I+ A+ +     PVI  V  M AS  YL    ++ I  A ++
Sbjct: 76  AVVLEVESGGGLPAQSERIYAAVDRTSEEMPVIATVDTMGASGAYLSMAPADEIYVAPSA 135

Query: 128 L-VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
             VGS+GV    P                 + P K           +  +  Q + +   
Sbjct: 136 QAVGSVGVAGTAPSPSGPNAG--------TTGPDKR-----GPSTEQQREQQQILANLFV 182

Query: 187 HWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
                 V E R    +     ++    + G EA   G  D  G  ++  +        +
Sbjct: 183 ES----VIEQRGDEIELDREEIAHANSYLGTEAVNNGYADDFGFVDDAIEDAADEAGLR 237


>gi|26990583|ref|NP_746008.1| phage minor capsid protein C, putative [Pseudomonas putida KT2440]
 gi|24985565|gb|AAN69472.1|AE016582_10 phage minor capsid protein C, putative [Pseudomonas putida KT2440]
          Length = 323

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 14/213 (6%)

Query: 38  VARIAIRG-------------QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           V  I + G              +   + L   + +   D     +++ + SPGGSA    
Sbjct: 79  VEVIPVHGVLVSRGSHLNACETMTSYEGLRAALNKAITDPMVEHIVLDIDSPGGSAVGAF 138

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +   I+     KP+   V+ MA S GYLI+ A   +V + TS VGSIGV+  +      
Sbjct: 139 ELAADIRAATKIKPITGLVNFMAYSGGYLIASACTEVVVSLTSGVGSIGVVASHMDRSKM 198

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           ++ +GV + +V +   K + SP   +  +++Q++ +VV  SY  F   V+E R       
Sbjct: 199 IEGMGVKVTTVFAGAHKNDLSPNEPITEQSLQVLNEVVQESYQLFTTHVAEYRGRDVADI 258

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           +  ++   + G+ A  +GL D +   +    +L
Sbjct: 259 IA-TEAACYRGSSAIAIGLADRLESPQLAVDNL 290


>gi|62179788|ref|YP_216205.1| Gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62127421|gb|AAX65124.1| Gifsy-1 prophage head-tail preconnector gp5 [Phage Gifsy-1]
 gi|322714256|gb|EFZ05827.1| Gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 498

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 86/217 (39%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +  R+++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHKLGGMRPFSGMTGYDGVTARLQQAVSDPEVKGILLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    +E A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRMREQKPVWALANETACSAAMLLAAACSHRLVTQTSRMGSIGVVMAHTSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + G+ I  + S   KA+ +P  ++        Q  +D +   F   V+    +  D
Sbjct: 196 EKLKQEGIDITLIYSGAHKADLTPSQKLPESVYADYQQRMDEARKMFAEKVARYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +  ++  ++ G      GL D +    +    +  
Sbjct: 256 AVMA-TEAAVYDGQAIITTGLADGMVNAADAIGVMAE 291


>gi|330444147|ref|YP_004377133.1| proteinase IV [Chlamydophila pecorum E58]
 gi|328807257|gb|AEB41430.1| proteinase IV [Chlamydophila pecorum E58]
          Length = 303

 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 112/260 (43%), Gaps = 15/260 (5%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQELIERIERI--------SRDDSATALIVSLSSPGGSAY 81
            +   +P +  + I+  I  ++   + +E           +D     +I+ ++ PGG  +
Sbjct: 30  ELGKTAPIIVVLDIKDSITSAKSSAKSLEEALLALEKEPFKD-RVKGVILDMNCPGGEVF 88

Query: 82  AGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQY 138
               I+  +   K +   P+   V+ + AS GY I+C ++ I  +  SL+GS+GVL   Y
Sbjct: 89  EVSRIYATLNFWKQKSSLPLYVFVNGLCASGGYYIACTADKIYTSPASLIGSVGVLSGPY 148

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             VK  L++ G+    + +   KA  +P++    +A +  Q V+D  Y  FV +V+  R 
Sbjct: 149 FNVKEGLNRHGIESDVLTAGEEKAPLNPYTPWTAQARKERQGVIDFLYGQFVDVVASHRP 208

Query: 199 -IPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
            +  DK       RI+   +A + G +DV+   ++ V Q L      +   ++       
Sbjct: 209 LLTKDKLERTLGARIFPPQQALEEGFVDVINVTKQHVLQELVTACGIEESYRVVGIEG-G 267

Query: 257 NYWFCDLKNLSISSLLEDTI 276
             W       + S L+   +
Sbjct: 268 GLWKKIATAAASSPLITGKL 287


>gi|281178282|dbj|BAI54612.1| putative phage capsid assembly protein [Escherichia coli SE15]
          Length = 501

 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|323185713|gb|EFZ71074.1| head-tail preconnector protein GP5 [Escherichia coli 1357]
          Length = 538

 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 86/222 (38%), Gaps = 14/222 (6%)

Query: 35  SPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
              +A + + G              +     L  R++    D     +++ + SPGG A 
Sbjct: 75  KNGIAILPVSGTLVHKMGTLRPYSGMTGYDGLTARLKSAVNDPDVRGILLDIDSPGGQAA 134

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                   I +++ +KPV    ++MA SA  L++ A    +  +T+ +GSIGV+  +   
Sbjct: 135 GAFDCADMIYRLREQKPVWALCNDMACSAAMLLAAACTRRLVTQTAKIGSIGVMMAHTSY 194

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
           +  L + GV I  + S   K + +    +        Q  +D +   FV  V+    +  
Sbjct: 195 EKQLAQEGVDITLIYSGQHKVDGNSIQALPTGVRADFQRRIDEARRMFVDKVALYTGLSS 254

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
           +  +  ++  ++ G      GL D +    +    + +   D
Sbjct: 255 EAVMN-TEATVYDGQAGIDTGLADQLINAADAVDVMVSALND 295


>gi|218557481|ref|YP_002390394.1| head-tail preconnector protein GP5 [Escherichia coli S88]
 gi|300825250|ref|ZP_07105336.1| putative signal peptide peptidase SppA [Escherichia coli MS 119-7]
 gi|218364250|emb|CAR01919.1| Head-tail preconnector protein GP5 [Contains: Scaffold protein GP6
           (Head protein GP6)] [Escherichia coli S88]
 gi|300522269|gb|EFK43338.1| putative signal peptide peptidase SppA [Escherichia coli MS 119-7]
          Length = 501

 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|299769230|ref|YP_003731256.1| putative periplasmic protease [Acinetobacter sp. DR1]
 gi|298699318|gb|ADI89883.1| putative periplasmic protease [Acinetobacter sp. DR1]
          Length = 320

 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 109/260 (41%), Gaps = 13/260 (5%)

Query: 33  DNSPHVARIAIRGQIEDS--QELIERIERISRDDSA--TALIVSLSSPGGSAYAGEAIFR 88
            N+  +  +  +G I+ S  + + E I  I     A    ++V L SPGG  +       
Sbjct: 54  KNNQKIFVLDFKGDIQASAVENIREEITLILATAKAGRDRVVVRLESPGGMVHGYGLAAA 113

Query: 89  AIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            + ++++    +   V ++AAS GY+++C +N I+AA  ++VGSIGV+ Q P     L +
Sbjct: 114 QLVRLRDAGFHLTICVDKVAASGGYMMACIANEIIAAPFAIVGSIGVVAQVPNFNRLLKQ 173

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
             V  +   +   K   + F E  P+     ++ +  ++  F   V + R  P      +
Sbjct: 174 HNVDFELYTAGQYKRTVTMFGENTPEGKAKFEEELQQTHVLFKHFVEKYR--PQLNVDKV 231

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G  W G +A ++ L+D +   +E   +L           +   N  K     +   L 
Sbjct: 232 ATGEHWYGEDALELNLVDKLQTSDEYLLALL------PQHDVYVINTRKKATLGEKLGLQ 285

Query: 268 ISSLLEDTIPLMKQTKVQGL 287
            + + +  IP +       L
Sbjct: 286 AAQMADSLIPAVMNKVADTL 305


>gi|260844392|ref|YP_003222170.1| putative head protein/prohead protease [Escherichia coli O103:H2
           str. 12009]
 gi|260844530|ref|YP_003222308.1| putative head protein/prohead protease [Escherichia coli O103:H2
           str. 12009]
 gi|257759539|dbj|BAI31036.1| putative head protein/prohead protease [Escherichia coli O103:H2
           str. 12009]
 gi|257759677|dbj|BAI31174.1| putative head protein/prohead protease [Escherichia coli O103:H2
           str. 12009]
          Length = 501

 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G      GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIDAGLADELVNASDAISVMA 290


>gi|293414565|ref|ZP_06657214.1| phage capsid assembly protein [Escherichia coli B185]
 gi|291434623|gb|EFF07596.1| phage capsid assembly protein [Escherichia coli B185]
          Length = 538

 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 89/227 (39%), Gaps = 14/227 (6%)

Query: 35  SPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
              +A + + G              +     L  R++    D     +++ + SPGG A 
Sbjct: 75  KNGIAILPVSGTLVHKLGTLRPYSGMTGYDGLTARLQMAVNDPDVRGILLDIDSPGGQAA 134

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                   I +++ +KPV    ++MA SA  L++ A    +  +T+ +GSIGV+  +   
Sbjct: 135 GAFDCADMIYRLREQKPVWALCNDMACSAAMLLAAACTRRLVTQTAKIGSIGVMMAHTSY 194

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
           +  L + GV I  + S   K + +    +        Q  +D +   FV  V+    +  
Sbjct: 195 EKQLAQEGVDITLIYSGQHKVDGNSIQALPAGVRADFQRRIDEARRMFVDKVALYTGLSS 254

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           +  +  ++  ++ G      GL D +    +  + + +   D   ++
Sbjct: 255 EAVMN-TEAAVYDGQAGIDAGLADQLINAADAVEVMVSALNDSVTKE 300


>gi|91210523|ref|YP_540509.1| putative prophage capsid assembly protein [Escherichia coli UTI89]
 gi|187732704|ref|YP_001880064.1| head-tail preconnector protein GP5 [Shigella boydii CDC 3083-94]
 gi|91072097|gb|ABE06978.1| putative capsid assembly protein of prophage [Escherichia coli
           UTI89]
 gi|187429696|gb|ACD08970.1| head-tail preconnector protein GP5 [Shigella boydii CDC 3083-94]
 gi|294489477|gb|ADE88233.1| head-tail preconnector protein [Escherichia coli IHE3034]
 gi|307627191|gb|ADN71495.1| Head-tail preconnector protein GP5 (Contains: Scaffold protein GP6
           (Head protein GP6)) [Escherichia coli UM146]
          Length = 501

 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|261253391|ref|ZP_05945964.1| SohB protein peptidase U7 family [Vibrio orientalis CIP 102891]
 gi|260936782|gb|EEX92771.1| SohB protein peptidase U7 family [Vibrio orientalis CIP 102891]
          Length = 349

 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 110/261 (42%), Gaps = 14/261 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
                   PH+  +  +G I+        +E+   +      D    +++ L S GG  +
Sbjct: 93  GDLDSKREPHLFVLDFKGSIDAKEVASLREEVTAILAVAREGDE---VLLRLESGGGMVH 149

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + ++K  K P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P 
Sbjct: 150 GYGLASSQLDRLKAAKLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIAQLPN 209

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E   KA +  +  ++ ++  F   + E R  P
Sbjct: 210 FNKVLKKYDIEYEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHGLFKDFIRERR--P 267

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
             +   ++ G  W G +A ++GL+D +   +++           +I  ++          
Sbjct: 268 ALELEKVATGEHWFGTQAHELGLVDEIKTSDDLVVEACKDKTVLAIHYVE--KKKLTSKL 325

Query: 261 CDLKNLSISSLLEDTIPLMKQ 281
             L   +  ++L   I   ++
Sbjct: 326 AGLAGEAADNVLMKLIDRGQR 346


>gi|301159156|emb|CBW18670.1| putative bacteriophage tail protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
          Length = 482

 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 86/217 (39%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +  R+++   D     +++ + SPGG A  
Sbjct: 60  NGIAVLPVTGTLVHKLGGMRPFSGMTGYDGVTARLQQAVSDPEVKGILLDIDSPGGQAAG 119

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    +E A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 120 AFDCADMIYRMREQKPVWALANETACSAAMLLAAACSHRLVTQTSRMGSIGVVMAHTSYA 179

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + G+ I  + S   KA+ +P  ++        Q  +D +   F   V+    +  D
Sbjct: 180 EKLKQEGIDITLIYSGAHKADLTPSQKLPESVYADYQQRMDEARKMFAEKVARYTGLSVD 239

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +  ++  ++ G      GL D +    +    +  
Sbjct: 240 AVMA-TEAAVYDGQAIITTGLADGMVNAADAIGVMAE 275


>gi|15801571|ref|NP_287588.1| putative head-tail preconnector protein of prophage CP-933O
           [Escherichia coli O157:H7 EDL933]
 gi|12515088|gb|AAG56200.1|AE005349_4 putative head-tail preconnector protein of prophage CP-933O
           [Escherichia coli O157:H7 str. EDL933]
          Length = 501

 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQNMQQRIDAARRMFAEKVAMFTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G      GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIDAGLADELVNASDAISVMA 290


>gi|16765926|ref|NP_461541.1| head-tail preconnector-like protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167992742|ref|ZP_02573838.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168466629|ref|ZP_02700483.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168467948|ref|ZP_02701785.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168468075|ref|ZP_02701912.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168822377|ref|ZP_02834377.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|169257232|ref|YP_001700609.1| bacteriophage prohead protease; Lambda gpC homolog [Phage Gifsy-1]
 gi|194445600|ref|YP_002041869.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|16421154|gb|AAL21500.1| Gifsy-1 prophage protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|194404263|gb|ACF64485.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|195628838|gb|EDX48256.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|195628990|gb|EDX48386.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|195630840|gb|EDX49432.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|205329131|gb|EDZ15895.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205341279|gb|EDZ28043.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|261247803|emb|CBG25631.1| capsid assembly protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|312913598|dbj|BAJ37572.1| Gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320085509|emb|CBY95288.1| Head-tail preconnector protein GP5 Contains: Scaffold protein GP6;
           Head protein GP6 [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321222685|gb|EFX47756.1| head-tail preconnector-like protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323130940|gb|ADX18370.1| head-tail preconnector-like protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332989534|gb|AEF08517.1| head-tail preconnector-like protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 498

 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 86/217 (39%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +  R+++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHKLGGMRPFSGMTGYDGVTARLQQAVSDPEVKGILLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    +E A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRMREQKPVWALANETACSAAMLLAAACSHRLVTQTSRMGSIGVVMAHTSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + G+ I  + S   KA+ +P  ++        Q  +D +   F   V+    +  D
Sbjct: 196 EKLKQEGIDITLIYSGAHKADLTPSQKLPESVYADYQQRMDEARKMFAEKVARYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +  ++  ++ G      GL D +    +    +  
Sbjct: 256 AVMA-TEAAVYDGQAIITTGLADGMVNAADAIGVMAE 291


>gi|15801775|ref|NP_287793.1| putative capsid assembly protein of prophage CP-933R [Escherichia
           coli O157:H7 EDL933]
 gi|15830362|ref|NP_309135.1| head-tail preconnector protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|15831986|ref|NP_310759.1| head-tail preconnector protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|168751220|ref|ZP_02776242.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4113]
 gi|168754268|ref|ZP_02779275.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4401]
 gi|168757627|ref|ZP_02782634.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4401]
 gi|168763183|ref|ZP_02788190.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4501]
 gi|168763888|ref|ZP_02788895.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4501]
 gi|168767447|ref|ZP_02792454.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4486]
 gi|168770248|ref|ZP_02795255.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777049|ref|ZP_02802056.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4196]
 gi|168777492|ref|ZP_02802499.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778046|ref|ZP_02803053.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4196]
 gi|168780966|ref|ZP_02805973.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4076]
 gi|168783394|ref|ZP_02808401.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4076]
 gi|168784264|ref|ZP_02809271.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787454|ref|ZP_02812461.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC869]
 gi|168789357|ref|ZP_02814364.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC869]
 gi|168801276|ref|ZP_02826283.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC508]
 gi|168802152|ref|ZP_02827159.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC508]
 gi|195935207|ref|ZP_03080589.1| putative head-tail preconnector protein [Escherichia coli O157:H7
           str. EC4024]
 gi|195939765|ref|ZP_03085147.1| putative head-tail preconnector protein [Escherichia coli O157:H7
           str. EC4024]
 gi|208806693|ref|ZP_03249030.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4206]
 gi|208810278|ref|ZP_03252154.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4206]
 gi|208811228|ref|ZP_03253038.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815162|ref|ZP_03256341.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4045]
 gi|208817055|ref|ZP_03258175.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820900|ref|ZP_03261220.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4042]
 gi|208822761|ref|ZP_03263080.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395709|ref|YP_002271108.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4115]
 gi|209398436|ref|YP_002269682.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325919|ref|ZP_03442003.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           TW14588]
 gi|217329576|ref|ZP_03445655.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           TW14588]
 gi|254792211|ref|YP_003077048.1| capsid assembly protein [Escherichia coli O157:H7 str. TW14359]
 gi|254793644|ref|YP_003078481.1| putative capsid assembly protein of prophage CP-933R [Escherichia
           coli O157:H7 str. TW14359]
 gi|261225748|ref|ZP_05940029.1| Head-tail preconnector protein GP5 (Contains: Scaffold protein GP6
           (Head protein GP6)) [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261257965|ref|ZP_05950498.1| Head-tail preconnector protein GP5 (Contains: Scaffold protein GP6
           (Head protein GP6)) [Escherichia coli O157:H7 str.
           FRIK966]
 gi|12515353|gb|AAG56407.1|AE005368_13 putative capsid assembly protein of prophage CP-933R [Escherichia
           coli O157:H7 str. EDL933]
 gi|13360568|dbj|BAB34531.1| putative head-tail preconnector protein [Escherichia coli O157:H7
           str. Sakai]
 gi|13362200|dbj|BAB36155.1| putative head-tail preconnector protein [Escherichia coli O157:H7
           str. Sakai]
 gi|187766864|gb|EDU30708.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4196]
 gi|187767278|gb|EDU31122.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4196]
 gi|187767637|gb|EDU31481.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014675|gb|EDU52797.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4113]
 gi|188998532|gb|EDU67522.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4076]
 gi|188999298|gb|EDU68284.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4076]
 gi|189001214|gb|EDU70200.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355418|gb|EDU73837.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4401]
 gi|189358337|gb|EDU76756.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4401]
 gi|189360828|gb|EDU79247.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4486]
 gi|189363243|gb|EDU81662.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366001|gb|EDU84417.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4501]
 gi|189366559|gb|EDU84975.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4501]
 gi|189371025|gb|EDU89441.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC869]
 gi|189372590|gb|EDU91006.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC869]
 gi|189375824|gb|EDU94240.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC508]
 gi|189376524|gb|EDU94940.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC508]
 gi|208724335|gb|EDZ74044.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4206]
 gi|208724794|gb|EDZ74501.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4206]
 gi|208726494|gb|EDZ76095.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731398|gb|EDZ80087.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4045]
 gi|208731810|gb|EDZ80498.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738246|gb|EDZ85929.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4042]
 gi|208741023|gb|EDZ88705.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157109|gb|ACI34542.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4115]
 gi|209159836|gb|ACI37269.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC4115]
 gi|217317344|gb|EEC25773.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           TW14588]
 gi|217322140|gb|EEC30564.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           TW14588]
 gi|254591611|gb|ACT70972.1| capsid assembly protein [Escherichia coli O157:H7 str. TW14359]
 gi|254593044|gb|ACT72405.1| putative capsid assembly protein of prophage CP-933R [Escherichia
           coli O157:H7 str. TW14359]
 gi|320192550|gb|EFW67192.1| Head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC1212]
 gi|326342702|gb|EGD66473.1| Head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           1125]
 gi|326347754|gb|EGD71470.1| Head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           1044]
          Length = 501

 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQNMQQRIDAARRMFAEKVAMFTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G      GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIDAGLADELVNASDAISVMA 290


>gi|55378760|ref|YP_136610.1| protease IV-like [Haloarcula marismortui ATCC 43049]
 gi|55231485|gb|AAV46904.1| protease IV-like [Haloarcula marismortui ATCC 43049]
          Length = 319

 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 99/251 (39%), Gaps = 19/251 (7%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWS------SHVEDNSPHVARIAIRGQIEDSQ--ELIE 55
           +   +   YV+   + + +                D+ P VA I +RG   D+    + +
Sbjct: 7   LFSAMTASYVIAVTLAIVIAAIFAPVIWNGVPSGGDDDPSVAVITLRGGTTDANVNAVKQ 66

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
            +     ++S  A+++ + SPGG   + E  + A+ +  +  PV+  V   AAS GY   
Sbjct: 67  DLREARTNESIEAVVLRVDSPGGPVDSSEEFYLAVNRTASEMPVVAYVEGTAASGGYYGI 126

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
             ++ IV   +S VGSIGV+ Q P        L +  +  +         P       + 
Sbjct: 127 TPADEIVVKPSSNVGSIGVIVQAP--------LSLIEQVEQQGETFVRSGPDKA--QISK 176

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
             +++ ++     FV  V   R      +   +++G  + GA+A + G  D +G      
Sbjct: 177 DSLREDIEVLQRSFVGTVMRHRGEQLTVSREEVANGGTYLGAQATENGFADRIGDTGLAI 236

Query: 235 QSLYALGVDQS 245
           +   AL  D  
Sbjct: 237 ERAAALSDDIE 247


>gi|121996911|ref|YP_001001698.1| putative periplasmic protease [Halorhodospira halophila SL1]
 gi|121588316|gb|ABM60896.1| inner membrane peptidase, Serine peptidase, MEROPS family S49
           [Halorhodospira halophila SL1]
          Length = 335

 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 96/262 (36%), Gaps = 11/262 (4%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGS 79
           S +   E     +  +  RG I         +E+   I   +       +I+ L SPGG 
Sbjct: 78  SETPPAELPDKRIYVLEFRGDIRARAVEGLREEITAVI--AAARPGQDEVILRLESPGGG 135

Query: 80  AYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             A       + +++     +   V  +AAS GYL++   + IVAA  +L+GSIGV+   
Sbjct: 136 VPAYGLAASQLARLREAGIHLTVCVDRVAASGGYLMAVVGDRIVAAPFALIGSIGVVGSL 195

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P    +L    +  +   + P K   + F E      +  ++ +   +  F   +   R 
Sbjct: 196 PNFHRWLRNRDIDFEQHTAGPYKRTLTVFGENTEADRERFREDLGHIHEQFKGFLRRYR- 254

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P      ++ G  W    A + GLID +   ++   +         +   +     +  
Sbjct: 255 -PQLDVETVATGEFWLAERALEAGLIDALQTSDDCIMAQREQAHLLEVDYRQREGWSQRL 313

Query: 259 WFCDLKNLSISSLLEDTIPLMK 280
                + L   S ++   P ++
Sbjct: 314 TQVTERLLGQRSGIDRLGPDLE 335


>gi|215485837|ref|YP_002328268.1| predicted head protein/prohead protease [Escherichia coli O127:H6
           str. E2348/69]
 gi|215263909|emb|CAS08247.1| predicted head protein/prohead protease [Escherichia coli O127:H6
           str. E2348/69]
          Length = 501

 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G      GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIDAGLADELVNASDAISVMA 290


>gi|193066616|ref|ZP_03047653.1| head-tail preconnector protein GP5 [Escherichia coli E22]
 gi|192925744|gb|EDV80401.1| head-tail preconnector protein GP5 [Escherichia coli E22]
          Length = 501

 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G      GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIDAGLADELVNASDAISVMA 290


>gi|284921116|emb|CBG34182.1| phage head-tail preconnector protein [contains: scaffold protein]
           [Escherichia coli 042]
          Length = 501

 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|260842992|ref|YP_003220770.1| putative head protein/prohead protease [Escherichia coli O103:H2
           str. 12009]
 gi|257758139|dbj|BAI29636.1| putative head protein/prohead protease [Escherichia coli O103:H2
           str. 12009]
          Length = 501

 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G      GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIDAGLADELVNASDAISVMA 290


>gi|6723229|dbj|BAA89626.1| orf7 [Wolbachia phage WO]
          Length = 353

 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 104/239 (43%), Gaps = 14/239 (5%)

Query: 31  VEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPG 77
           V  N    A IAI G              +   +++ E IE    +     +++ + SPG
Sbjct: 40  VNQNIEKTAVIAINGILTKKPGAFDDFLGMTSYEKIQEEIEEALSNKDIETILLDIDSPG 99

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G       +   I + + +K +I   ++ A SA Y I+ ++  +  + TS VGSIGV+  
Sbjct: 100 GEVNGIFDLADFIYESRAKKRIIAIANDDAYSAAYAIASSAEKVFVSRTSGVGSIGVIAS 159

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +     F +K G+   ++ +   K + +P   +  ++++ +Q  V   Y  F++L++ +R
Sbjct: 160 HIDQSRFDEKQGIKYTTIFAGSRKNDLNPHEPMTSESLESLQKEVGRLYEMFLQLIARNR 219

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
            +  +K      G  + G +A ++GL D V    E   +  +  V  +  ++ D     
Sbjct: 220 GLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFINNHKSRSVSMTTNELPDEGYEN 277


>gi|207092958|ref|ZP_03240745.1| signal peptide protease IV [Helicobacter pylori HPKX_438_AG0C1]
          Length = 194

 Score = 91.6 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 88/177 (49%), Gaps = 4/177 (2%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           ++F+ K  K+      L+ + +V+FS         P++A++ + G I  +++  + +++I
Sbjct: 17  LDFITKYFKS----FMLLLIVLVFFSAKESTPSAPPNLAKLYLNGAIFSAEDFDKEVDKI 72

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +  S   +++ + SPGG+  A   +   I  +K + PV+     + AS  Y     ++ 
Sbjct: 73  LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           + A++ SL+GSIGV+F    V+  L+K+GV+ + V +   K   +      P   + 
Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEF 189


>gi|163750235|ref|ZP_02157477.1| sohB protein, peptidase U7 family [Shewanella benthica KT99]
 gi|161330091|gb|EDQ01075.1| sohB protein, peptidase U7 family [Shewanella benthica KT99]
          Length = 335

 Score = 91.2 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 111/259 (42%), Gaps = 18/259 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAG 83
             +   P V  +  +G I+ S+      E+   +     DD    +IV++ S GG  +  
Sbjct: 82  DEQTLDPRVFVVDFKGSIDASEVASLREEISAILTIAETDDE---VIVNVESGGGMVHGY 138

Query: 84  EAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                 + +++     +   V ++AAS GY+++C +N I AA  ++VGSIGV+ Q P   
Sbjct: 139 GLASSQLDRLRQAGIHLTICVDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQIPNFN 198

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L K  +  +   +   K   + F E   +     Q  ++ ++  F + +++ R  P  
Sbjct: 199 KLLKKHDIDYEQHTAGDFKRTLTLFGENTDEGRAKFQAELEDTHVLFKQFIAKYR--PEL 256

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               ++ G  W G +A K+GL+D +   ++V      L  ++++ K++     K   F D
Sbjct: 257 DLDKVATGEHWYGQQAIKLGLVDAISTSDDVV---MKLARERTVIKVRYQLKKK---FAD 310

Query: 263 LKNLSISSLLEDTIPLMKQ 281
                IS         + +
Sbjct: 311 KIAHGISLSFNAIFNKLAE 329


>gi|291285789|ref|YP_003502607.1| Head-tail preconnector protein GP5 [Escherichia coli O55:H7 str.
           CB9615]
 gi|290765662|gb|ADD59623.1| Head-tail preconnector protein GP5 [Escherichia coli O55:H7 str.
           CB9615]
          Length = 501

 Score = 91.2 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVSCLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|117919978|ref|YP_869170.1| putative periplasmic protease [Shewanella sp. ANA-3]
 gi|117612310|gb|ABK47764.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Shewanella sp.
           ANA-3]
          Length = 338

 Score = 91.2 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 113/246 (45%), Gaps = 10/246 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGE 84
            +  ED+   V  I  +G I+ ++   L E I  I    +    ++V++ S GG  +   
Sbjct: 84  KTAEEDSKGKVFVIDFKGSIDAAEVASLREEISAILTIAEKGDEVVVNVESGGGMVHGYG 143

Query: 85  AIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                + ++ +   P+   V ++AAS GY+++C +N + AA  ++VGSIGV+ Q P    
Sbjct: 144 LASSQLDRLRQAEIPLTICVDKVAASGGYMMACVANKVYAAPFAIVGSIGVVAQLPNFNR 203

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K  +  +   +   K   + F E   +  Q  Q  ++ ++  F   VS+ R  P   
Sbjct: 204 LLKKHEIDYEQHTAGDFKRTLTVFGENTDEGRQKFQQELEETHVLFKAFVSKYR--PQLD 261

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A ++GLID +   ++V   L  L  ++++ K++ +   K       
Sbjct: 262 LAKVATGEHWYGQQAIELGLIDAISTSDDV---LMQLAGERTVYKLR-YQVRKKLADKIA 317

Query: 264 KNLSIS 269
              S+S
Sbjct: 318 HGASLS 323


>gi|187733678|ref|YP_001879583.1| head-tail preconnector protein GP5 [Shigella boydii CDC 3083-94]
 gi|187430670|gb|ACD09944.1| head-tail preconnector protein GP5 [Shigella boydii CDC 3083-94]
          Length = 501

 Score = 91.2 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 89/216 (41%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVTCLQQAMADSQVRGILLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TSL+GSIGV+  +    
Sbjct: 136 VFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSLIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|291282672|ref|YP_003499490.1| Periplasmic serine proteases (ClpP class) [Escherichia coli O55:H7
           str. CB9615]
 gi|291283173|ref|YP_003499991.1| Periplasmic serine proteases (ClpP class) [Escherichia coli O55:H7
           str. CB9615]
 gi|290762545|gb|ADD56506.1| Periplasmic serine proteases (ClpP class) [Escherichia coli O55:H7
           str. CB9615]
 gi|290763046|gb|ADD57007.1| Periplasmic serine proteases (ClpP class) [Escherichia coli O55:H7
           str. CB9615]
          Length = 501

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGTHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G      GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIDAGLADELVNASDAISVMA 290


>gi|323499379|ref|ZP_08104355.1| putative inner membrane peptidase [Vibrio sinaloensis DSM 21326]
 gi|323315564|gb|EGA68599.1| putative inner membrane peptidase [Vibrio sinaloensis DSM 21326]
          Length = 353

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 111/267 (41%), Gaps = 17/267 (6%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPG 77
                       PH+  +  +G I+        +E+   +      D    +++ L S G
Sbjct: 93  ASKAGDLDSKREPHLFVLDFKGSIDAKEVASLREEVTAILAVAREGDE---VLLRLESGG 149

Query: 78  GSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           G  +        + ++K  K P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ 
Sbjct: 150 GMVHGYGLASSQLDRLKAAKLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIA 209

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
           Q P     L K  +  + + +   K   + F E   KA +  +  ++ ++  F   + E 
Sbjct: 210 QLPNFNKVLKKYDIEYEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHGLFKDFIRER 269

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R  P  +   ++ G  W G +A ++GL+D +   +++           +I  +      K
Sbjct: 270 R--PALELEKVATGEHWFGTQAHELGLVDEIKTSDDLVVEACKDKTVLAIHYV-----EK 322

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTK 283
                 L  ++  +     + L+ + +
Sbjct: 323 KKLTSKLAGMAGEAADNVLMKLIDRGQ 349


>gi|323160792|gb|EFZ46724.1| minor capsid protein C [Escherichia coli E128010]
          Length = 354

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYSGTHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G      GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIDAGLADELVNASDAISVMA 290


>gi|310767745|gb|ADP12695.1| putative periplasmic protease [Erwinia sp. Ejp617]
          Length = 349

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 115/265 (43%), Gaps = 18/265 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           V    P +  I  +G +   +      E+   +    + D    +++ L SPGG  +   
Sbjct: 96  VSKGKPTLYVIDFKGSMGAGEVSSLREEVSAVMAVAEKGDE---VLLRLESPGGVVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T  V ++AAS GY+++C ++ IVAA  S++GSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVAVDKVAASGGYMMACVADRIVAAPFSIIGSIGVVAQIPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L +  + ++   +   K   + F E   +  +  ++ ++ ++  F + V + R  P   
Sbjct: 213 LLKRNEIDVELHTAGEYKRTLTLFGENTEQGREKFREDLNETHQLFKQFVHQMR--PTLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +G  +++     A        ++      +     D 
Sbjct: 271 IDSVATGEHWYGQQALEKGLVDAIGTSDDLIIDHIAKH------QVIGVRYARRKGMMDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +  LE  +  + Q   + L 
Sbjct: 325 FTQSATLSLERLLLRIWQRGDKPLL 349


>gi|209918850|ref|YP_002292934.1| putative phage capsid assembly protein [Escherichia coli SE11]
 gi|209912109|dbj|BAG77183.1| putative phage capsid assembly protein [Escherichia coli SE11]
          Length = 499

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 86/212 (40%), Gaps = 14/212 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D S   +++ + SPGG A  
Sbjct: 76  NGIAILPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMVDPSVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    +EMA SA  L++ A    +  +T+ +GSIGV+  +   +
Sbjct: 136 AFDCADMIYRLREKKPVWALCNEMACSAAMLLAAACTRRLVTQTAKIGSIGVMMAHTSYE 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + +    +        Q  +D +   FV  V+    +  +
Sbjct: 196 KQLAQEGVDITLIYSGKHKVDGNCIQALPAGVCADFQRRIDEARQMFVDKVALYTGMSSE 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
             +  ++  ++ G     +GL D +    +  
Sbjct: 256 AVMS-TEAAVYDGQAGIDIGLADELINASDAI 286


>gi|303326909|ref|ZP_07357351.1| minor capsid protein C, degenerate [Desulfovibrio sp. 3_1_syn3]
 gi|302862897|gb|EFL85829.1| minor capsid protein C, degenerate [Desulfovibrio sp. 3_1_syn3]
          Length = 441

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 102/228 (44%), Gaps = 17/228 (7%)

Query: 37  HVARIAIRGQI---------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
           +VA + +RG +                   ++   +E  + D SATAL+++L SPGG+  
Sbjct: 78  NVAVVRVRGPLDRETAVSGWTGKRLSTGYGDIRSAMETAAADPSATALLLALDSPGGAVG 137

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
             + +  AI  V  RKPV      + ASA Y ++ A+  + A  T+ VGSIGV+  +   
Sbjct: 138 GCKELADAIAAVAARKPVAAYADGLCASAAYWLASATGRVFAPVTAQVGSIGVVMIHADF 197

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
               +K+GVS   +     KA  +  + ++P++   +Q  V++ +  F   V+ +  +  
Sbjct: 198 SHLNEKMGVSYSYITGGEWKAVGNKNAPLSPESRAYLQQRVNALHSIFRADVARNMGLDP 257

Query: 202 DKTL-VLSDGRIWTGAEAKKVGLIDVVGG-QEEVWQSLYALGVDQSIR 247
                   DG+I+   EA+++GL+  +    EE    L          
Sbjct: 258 SADACAWGDGQIFLAQEAQRLGLVSAIVTGMEEAIHILAQETHMDKKT 305


>gi|318605616|emb|CBY27114.1| putative protease sohB [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 348

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 119/270 (44%), Gaps = 18/270 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGS 79
           + S  V    P +  I  +G I+        +E+   +   +  D    +++ L SPGG 
Sbjct: 90  AKSGAVAAVKPCLYVIDFKGSIDAHEVASLREEISAVLAVATAQDE---VLLRLESPGGV 146

Query: 80  AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +        +++++++   +T  V ++AAS GY+++C ++ I++A  +++GSIGV+ Q 
Sbjct: 147 VHGYGLAASQLERLRHKGIRLTVAVDKVAASGGYMMACVADRIISAPFAIIGSIGVVAQI 206

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P     L K  + ++   +   K   + F E   +  +  ++ ++ ++  F + V + R 
Sbjct: 207 PNFHRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVHQQR- 265

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P      ++ G  W G +AK+ GL+D +G  +++   +  +       ++      +  
Sbjct: 266 -PSLDIDAVATGEHWFGTQAKEKGLVDAIGTSDDLL--IAEM----DNHEVIGVRYSRRK 318

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
              D    S +  ++  +    Q   + L 
Sbjct: 319 RLMDRFTGSAAETVDRLLLRWWQRGEKPLL 348


>gi|297621858|ref|YP_003709995.1| putative signal peptide peptidase sppA [Waddlia chondrophila WSU
           86-1044]
 gi|297377159|gb|ADI38989.1| putative signal peptide peptidase sppA [Waddlia chondrophila WSU
           86-1044]
          Length = 346

 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/281 (22%), Positives = 120/281 (42%), Gaps = 18/281 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQ---ELIERIER-----ISRDDSATALIVSLSSPGGSAYA 82
             DN+P + +++I G I         + +I +     + ++D   A++V +SSPGG+   
Sbjct: 66  ASDNAPVILKLSISGLIGTESLNMNTVSQILQESREGLFKNDRVKAVLVQISSPGGTVVD 125

Query: 83  GEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF-QYP 139
            + I+RA+++ K     P+   V  + AS G  I+ A + + A + SL+GS+GVL   + 
Sbjct: 126 SDGIYRALKQYKKDYNVPIYGFVDGLCASGGMYIASACDKVYATDVSLIGSVGVLSPAFF 185

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-N 198
                ++K+GV  K + +   K   +P           ++ ++DS Y+ FV +V E+R +
Sbjct: 186 NFTELMEKVGVDAKVLSAGKGKDALNPLRPWKEGEADSLKAIIDSYYNQFVDIVVENRPD 245

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           I     +      ++  ++A+++G ID  G   EE  + L      +           K 
Sbjct: 246 IKRTHLINDYGAHVYLASKAQELGYIDGSGFTYEETMKLLAKEMGIEDDYYQVVRMERKF 305

Query: 258 YWFCDLKNLSISSLLE-----DTIPLMKQTKVQGLWAVWNP 293
                  N ++          D  P      +     ++ P
Sbjct: 306 DLSDYFNNGTMLFNGRVKHQIDLSPSFDLNLMNQYLYLYMP 346


>gi|284921153|emb|CBG34219.1| probable protease [Escherichia coli 042]
          Length = 349

 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 112/267 (41%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRG-----QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
                D+ P V  +  +G     ++   +E I  I    +      +++ L SPGG  + 
Sbjct: 93  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAILAAFK--PQDQVVLRLESPGGMVHG 150

Query: 83  GEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P  
Sbjct: 151 YGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNF 210

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
             FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P 
Sbjct: 211 NRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PS 268

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     
Sbjct: 269 LDIEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLI 322

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D    S +   +  +    Q   + L 
Sbjct: 323 DRFTGSAAESADRLLLRWWQRGQKPLM 349


>gi|226227659|ref|YP_002761765.1| hypothetical protein GAU_2253 [Gemmatimonas aurantiaca T-27]
 gi|226090850|dbj|BAH39295.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 502

 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 73/216 (33%), Gaps = 16/216 (7%)

Query: 36  PHVARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A I + G +              D   L   +     D    A+++   SPGG    
Sbjct: 74  DGIASIPVTGVLTRRASWFDAVCGAVDYTTLALELRSALDDHRVEAVVLQFDSPGGEVSG 133

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
              +   I+  + RKPV   V     SA Y ++     I    T+L G++GV      V 
Sbjct: 134 CSELGEQIRAARERKPVYAYVGGDCCSAAYWLAAQCTEIHVNNTALTGNLGVRMTAHDVS 193

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L      I  +          P      +A    Q +VD     F   V+  R++   
Sbjct: 194 RRLK--REGIDVITIVSSTTPAKPHDPTTDEAKARCQKIVDDLAAVFHAQVALGRSVEES 251

Query: 203 KT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           +       G ++ G +A   GL D V   E +  SL
Sbjct: 252 QIYEQYGRGAVFVGVDAVSHGLADAVTTYEALLASL 287


>gi|156393613|ref|XP_001636422.1| predicted protein [Nematostella vectensis]
 gi|156223525|gb|EDO44359.1| predicted protein [Nematostella vectensis]
          Length = 279

 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/267 (21%), Positives = 109/267 (40%), Gaps = 21/267 (7%)

Query: 35  SPHVARIAIRGQIEDSQE---------LIERIERISRDDSA--TALIVSLSSPGGSAYAG 83
              V  I ++G I  S           + + I+R          A+ + ++S GGS    
Sbjct: 12  KNVVRIIRLQGIINASSSNHRALSLRRVEKAIDRAFEVKKVAPKAVCLEINSTGGSPVQS 71

Query: 84  EAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
             I+  I++  N K  PV++ V + A S GY +S A + I     S VGSIG +     V
Sbjct: 72  NLIYTRIREQANDKKIPVLSFVEDHALSGGYWLSLAGDEIFVDPNSAVGSIGAVSSNVGV 131

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              + KLG+  + V     K   +P   + P+ V+ ++ ++   ++ F+ LV E R    
Sbjct: 132 VEAMKKLGLEYRPVVMGEHKVRMNPMEPLKPEDVEWVKKILAEVHNNFIDLVKERRTKLD 191

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN--PPKNYW 259
             +  +  G I+ G EA ++GL+D +         L +L   +    +       P++++
Sbjct: 192 TTSKTVFSGDIFLGKEAVRIGLVDAITT------DLKSLCKKRFGEDVVFERCDLPQDFF 245

Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQG 286
              +          +    +    ++G
Sbjct: 246 TRMMNKRFGMEASINVDEALDSLAIRG 272


>gi|145517316|ref|XP_001444541.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124411963|emb|CAK77144.1| unnamed protein product [Paramecium tetraurelia]
          Length = 239

 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 108/210 (51%), Gaps = 9/210 (4%)

Query: 34  NSPHVARIAIRGQIE--DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
             P +  I + G I+     ++ +++++I    +  AL V ++SPGG     + I + + 
Sbjct: 9   TKPRIPIIRLSGVIKQKSGDKIQDQLDKIKS-KNLCALAVLINSPGGLPVQSDIICQKLN 67

Query: 92  KVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
             K +   P+ T   ++AAS GY + C  + + A ++SLVGS+GV+ Q+  +K  L+KLG
Sbjct: 68  LFKQKHNIPIYTFAEDVAASGGYFVLCIGDKVFADQSSLVGSVGVISQWHGIKKALEKLG 127

Query: 150 VSIKSVKSSPMKAE--PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
           +  K + S+    E   S FSE NP+      D ++ ++  F+  V   R    D+   +
Sbjct: 128 IEAKFLSSNDQIHEVVNSAFSEFNPQGATQWVDKLEYTHQMFIDHVKSYRKNIVDQ--NV 185

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
               ++ G +AK++GLID  G  EEV   L
Sbjct: 186 FKAEVYNGEQAKQLGLIDDFGNYEEVLNKL 215


>gi|71083320|ref|YP_266039.1| S49 family peptidase [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762250|ref|ZP_01264215.1| Peptidase family S49 [Candidatus Pelagibacter ubique HTCC1002]
 gi|71062433|gb|AAZ21436.1| Peptidase family S49 [Candidatus Pelagibacter ubique HTCC1062]
 gi|91718052|gb|EAS84702.1| Peptidase family S49 [Candidatus Pelagibacter ubique HTCC1002]
          Length = 268

 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 126/262 (48%), Gaps = 25/262 (9%)

Query: 43  IRGQIEDSQELI---------ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
           + G I ++ +           E IE+      A A+ ++++SPGGS      I++ I+  
Sbjct: 16  LNGVIGNAGKFKQGIDFAGQEEIIEKAFSLKKAKAVAITINSPGGSPVQSHLIYKFIRAQ 75

Query: 94  --KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
             KN+  VI    ++AAS GYLI+CA + I A  +S++GSIGV++        + K+GV 
Sbjct: 76  AKKNKIKVIVFAEDVAASGGYLIACAGDEIYANSSSIIGSIGVIYSSFGFTELIKKIGVE 135

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDG 210
            +   +   K+   PF E   + ++ ++++    +  F+++V ESR     K  + L  G
Sbjct: 136 RRVHTAGKNKSSLDPFQEEKSEDIERLKNIQLDLHKDFIKVVEESRGSKLKKDGIELFSG 195

Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270
             W G+++K++GLID +G   E+ +  +   V     +       K+  +   K  S S+
Sbjct: 196 EFWAGSKSKELGLIDGLGNANEILKEKFGEDVIIKKFE-------KSKGWLSKKLSSSSN 248

Query: 271 LLEDTIPLMKQTKVQGLWAVWN 292
            ++    ++++       ++W 
Sbjct: 249 QIDQLANILEER------SIWQ 264


>gi|256018482|ref|ZP_05432347.1| putative periplasmic protease [Shigella sp. D9]
 gi|332279537|ref|ZP_08391950.1| conserved hypothetical protein [Shigella sp. D9]
 gi|324117536|gb|EGC11442.1| peptidase S49 [Escherichia coli E1167]
 gi|332101889|gb|EGJ05235.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 349

 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 112/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 93  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +   + ++ ++  F   V   R  P   
Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFCEELNETHQLFKDFVKRMR--PSLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349


>gi|171186306|ref|YP_001795225.1| peptidase S49 [Thermoproteus neutrophilus V24Sta]
 gi|170935518|gb|ACB40779.1| peptidase S49 [Thermoproteus neutrophilus V24Sta]
          Length = 550

 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 97/249 (38%), Gaps = 21/249 (8%)

Query: 9   KTRYVMLSLVTLTVVYF-----SWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERIS 61
               + L +V L  V+      +     +   P +  + +   I   +   +++ +  +S
Sbjct: 10  IALALALGVVALLAVFTICQPKAPGEAPQPTKPKIVLVPVDFVIGGPETDRVVKALVELS 69

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
           +      +I+ ++SPGG+    EA++ A++ +   K  +     + AS  Y  + A+  I
Sbjct: 70  QRRDVAGVILIINSPGGTVSGTEALYTALRGLNKTKYAVVVG--LGASGAYYTAVAAERI 127

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
            AA +S VGSIGV+         L           + P+K             +    D 
Sbjct: 128 YAAPSSWVGSIGVVAVIWPD---LYLYDAGDYVYTTGPLKYYGE--------DLLSYYDD 176

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLS-DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           V+     FV+ V E R         +     ++T  EA ++GL+D VGG  +  + +   
Sbjct: 177 VEKIRQNFVKAVLEGRRGRIKANPAVFETAGLFTAEEALRLGLVDKVGGVLDAARDMAEE 236

Query: 241 GVDQSIRKI 249
              ++   +
Sbjct: 237 LGLRNYSLV 245


>gi|238790408|ref|ZP_04634179.1| protease sohB [Yersinia frederiksenii ATCC 33641]
 gi|238721515|gb|EEQ13184.1| protease sohB [Yersinia frederiksenii ATCC 33641]
          Length = 335

 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 119/270 (44%), Gaps = 18/270 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGS 79
           + +  V    P +  I  +G I+        +E+   +   +  D    +++ L SPGG 
Sbjct: 77  AKAGAVATGKPCLYVIDFKGSIDAHEVTSLREEISAVLAVATAQDE---VLLRLESPGGV 133

Query: 80  AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +        +++++++   +T  V ++AAS GY+++C ++ I++A  +++GSIGV+ Q 
Sbjct: 134 VHGYGLAASQLERLRHKGIRLTVAVDKVAASGGYMMACVADRIISAPFAIIGSIGVVAQI 193

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P     L K  + ++   +   K   + F E   +  +  ++ ++ ++  F + V + R 
Sbjct: 194 PNFHRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVQQQR- 252

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P      ++ G  W G +AK+ GL+D +G  +++   +  +       ++      +  
Sbjct: 253 -PSLDIDAVATGEHWFGTQAKEKGLVDAIGTSDDLL--IAEM----DNHEVIGVRYSRRK 305

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
              D    S +  ++  +    Q   + L 
Sbjct: 306 RLMDRFTGSAAESVDRLLLRWWQRGEKPLL 335


>gi|320539111|ref|ZP_08038782.1| peptidase family S49 domain-containing protein [Serratia symbiotica
           str. Tucson]
 gi|320030749|gb|EFW12757.1| peptidase family S49 domain-containing protein [Serratia symbiotica
           str. Tucson]
          Length = 286

 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 89/219 (40%), Gaps = 14/219 (6%)

Query: 38  VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           +A I ++G              +     + +       D     + + + SPGG      
Sbjct: 69  IAVIPVQGTLVQKLGSLRPYSGMTGYDGIRQSFLTAMNDPEVAGICLDIDSPGGEVAGCF 128

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +   I      KP+ + + E A SA Y I+ A++ I    T  VGSIGV+  +      
Sbjct: 129 DLVDEIYHTHGSKPIHSILTENAYSAAYAIASAADRIHVPRTGGVGSIGVIVIHCDWSQR 188

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           + + G+++  +     KAE +P+ +++ +A   +QD VD+    FV  V+ +R I     
Sbjct: 189 IKEDGLAVSIITYGNRKAESNPYVKLSDQARAAIQDDVDTMGRLFVSTVARNRGISEKTI 248

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
                   +  A+  ++GL D V   +  ++ L+     
Sbjct: 249 RNTQAAC-FLAADGVQLGLADAVMTPDAAFRKLFTEAGV 286


>gi|152985660|ref|YP_001348823.1| putative periplasmic protease [Pseudomonas aeruginosa PA7]
 gi|150960818|gb|ABR82843.1| probable protease [Pseudomonas aeruginosa PA7]
          Length = 341

 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 106/256 (41%), Gaps = 18/256 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAY 81
           +    +    V  +   G I+ S       E+   +    +DD    +++ L S GG  +
Sbjct: 83  AKKHPEQKSRVYVLDFDGDIKASATEQLRHEVTAVLSMAGKDDE---VVLRLESGGGMVH 139

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + +++     +T    ++AAS GY+++C    I++A  +++GSIGV+ Q P 
Sbjct: 140 GYGLAASQLARIRQAGVPLTVCVDKVAASGGYMMACIGERILSAPFAILGSIGVVAQLPN 199

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           V   L K  +  + + +   K   + F E   K  +  Q+ ++ ++  F   V+  R  P
Sbjct: 200 VHRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLEVTHELFKNFVAHYR--P 257

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G +W G  A    L+D +   +E    L     ++ + +++          
Sbjct: 258 QLNMDEIATGEVWLGQAALGKLLVDELKTSDE---YLAEQARERDVYQVRFVERKS---L 311

Query: 261 CDLKNLSISSLLEDTI 276
            +   L+ S +++  +
Sbjct: 312 QERVGLAASVVIDRVL 327


>gi|269975292|gb|ACZ55516.1| prohead protease ClpP [Staphylococcus phage SA1]
          Length = 438

 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 99/257 (38%), Gaps = 15/257 (5%)

Query: 35  SPHVARIAIRGQIED-----------SQELIERIERIS-RDDSATALIVSLSSPGGSAYA 82
           S  +A I I G + +               I      +  D    A+I  ++S GG A  
Sbjct: 75  SNGLAIIPIHGTLINRYGGYYYGYVTGYNFIRSQRNAALADPDVEAIIYDVNSNGGEAAG 134

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
              + + +   +  KP +  V     SA Y ++ A++ IV   +   GSIGV+  +  + 
Sbjct: 135 CFELSQEMFDTRGEKPSLAVVDSNCYSAAYALASAADKIVVTPSGGAGSIGVIALHIDMS 194

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L  +G+++  +KS   KA+ +P+  ++ +     Q  VDS    FV LV+++R++   
Sbjct: 195 KMLADIGITVNIIKSGEHKADGNPYEPMSDEVRADWQASVDSMRTDFVNLVAQNRDLDPK 254

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
                ++   +   EA  +GLID V    +       L                ++   +
Sbjct: 255 VVRD-TEAMCYNAGEAMSIGLIDAVSTPSKAVTEF--LNGPSDNSPDHSGANAMSFTQEE 311

Query: 263 LKNLSISSLLEDTIPLM 279
           +      +   +   + 
Sbjct: 312 MDAARAEAATNERTRIA 328


>gi|323965411|gb|EGB60867.1| peptidase S49 [Escherichia coli M863]
          Length = 501

 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 91/215 (42%), Gaps = 14/215 (6%)

Query: 38  VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           +A + + G              +     ++  +++   D S   +++ + SPGG A    
Sbjct: 78  IAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADTSVRGVLLDIDSPGGQAAGAF 137

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
                I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +      
Sbjct: 138 DCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMGHVSYAGH 197

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L + GV I  + +   K + + F  +  +  Q MQ  +D+++  F   V+    +  D  
Sbjct: 198 LAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRIDAAHRMFAEKVAMYTGLSVDAV 257

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
              ++  ++ G    + GL D +    +    + A
Sbjct: 258 -TGTEAAVFEGQSGIEAGLADELINASDAISVMAA 291


>gi|212634753|ref|YP_002311278.1| putative periplasmic protease [Shewanella piezotolerans WP3]
 gi|212556237|gb|ACJ28691.1| SohB protein, peptidase U7 family [Shewanella piezotolerans WP3]
          Length = 343

 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 104/244 (42%), Gaps = 10/244 (4%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEAI 86
               N P V  I  +G I+  +   L E I  I    D    +IV++ S GG  +     
Sbjct: 90  KEPANDPKVFVIDFKGSIDAGEVASLREEISAILTIADKGDEVIVNVESGGGMVHGYGLA 149

Query: 87  FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
              + +++    P+   V ++AAS GY+++C +N + AA  ++VGSIGV+ Q P     L
Sbjct: 150 SSQLDRLRKAEIPLSICVDKVAASGGYMMACVANKVYAAPFAIVGSIGVVAQVPNFNRLL 209

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K  +  +   +   K   + F E   +  +  Q  ++ ++  F   +S+ R  P     
Sbjct: 210 KKHDIDYEQHTAGDFKRTLTIFGENTDEGREKFQKELEETHVLFKEFISKYR--PELDIA 267

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            ++ G  W G +A ++GLID V   ++V   L     ++       +   K         
Sbjct: 268 KVATGEHWYGQQAIELGLIDEVATSDDVILKLA----NERTVVKVSYQLKKKLSDKIAHG 323

Query: 266 LSIS 269
            S+S
Sbjct: 324 ASLS 327


>gi|168704191|ref|ZP_02736468.1| hypothetical protein GobsU_31944 [Gemmata obscuriglobus UQM 2246]
          Length = 304

 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 99/242 (40%), Gaps = 30/242 (12%)

Query: 31  VEDNSPHVARIAIRGQIED---------SQE----LIERIERISRDDSATALIVSLSSPG 77
           V+  +P +A + + G I +          +       E++E ++ D  A A+++ ++SPG
Sbjct: 53  VQGGAPRIALVDVDGLILNTPFVGPLSVGENPVALFREKLEAVACDPCAKAVVLRINSPG 112

Query: 78  GSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           G   A  A+   +++ K R   PV+  + + A    Y ++ A++ IVA   ++ G +GV+
Sbjct: 113 GGVAACIAMRHDLEQFKARTRLPVVACLMDTATGGAYYLASAADHIVAGPATVTGGLGVV 172

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                ++  +  + V  + +KS       +    +     +++Q + D         +  
Sbjct: 173 LNLFNLQDLMGMVNVRPQLIKSGERTDIGTSARRLTDGERELLQAMADEFRDRLAADIRR 232

Query: 196 SRNIPYDKTL---------------VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           SR    ++                    DGRI T  +AK   L+D VG  ++        
Sbjct: 233 SRPGVVERLETPFEGSMFGWNLDRGRTFDGRILTAEQAKARNLVDAVGSLDDAISVAAPD 292

Query: 241 GV 242
           GV
Sbjct: 293 GV 294


>gi|167626930|ref|YP_001677430.1| S49 family serine peptidase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596931|gb|ABZ86929.1| serine peptidase, S49 family [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 214

 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 94/206 (45%), Gaps = 11/206 (5%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCASNIIVAAE 125
           +IV ++SPGGS    + I+  ++ ++ +    P+     ++ AS GY I+  +  I A +
Sbjct: 1   MIVEINSPGGSPVQSDEIYSHMRYLQKKYPNIPMYAVCTDVCASGGYYIAAGAKDIYANK 60

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
            ++VGSIGV+         +DKLG+  ++  S   K    PFS   P+       ++D +
Sbjct: 61  MTIVGSIGVIGSGFGFTGLMDKLGIERRTYTSGSNKDFLDPFSPERPEQTAQFNKLLDET 120

Query: 186 YHWFVRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
           +  F+R V +SR              G  ++G +A+++GLID      ++ +  +     
Sbjct: 121 HQVFIRAVEQSRGNRLKDKAIDTTFSGEPFSGIQAQRMGLIDGFASVNQLKRDKF----- 175

Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSIS 269
            +   I D+  P ++       L  S
Sbjct: 176 -NNLDIVDYTQPLDFLTAVSNKLGNS 200


>gi|190571676|ref|YP_001976034.1| Putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357948|emb|CAQ55411.1| Putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 345

 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 101/226 (44%), Gaps = 14/226 (6%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATAL 69
           ++      V  N    A I I G              +   +++ E+I +   D S   +
Sbjct: 32  IFKKIKHAVNQNIEKTAVIEIHGILTKKPGAFDVFLGMTSYEQIEEQITQALADSSIETI 91

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           I+ + SPGG       +   I + + +K +I   ++ A SA Y I+ ++  +  + TS V
Sbjct: 92  ILEIDSPGGEVNGIFDLADFIYESRAKKRIIAIANDDAYSAAYAIASSAEKVFVSRTSGV 151

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+  +     F +K G+   +V +   K + +P   +  ++++ +Q  VD  Y  F
Sbjct: 152 GSIGVIASHIDQSGFDEKCGIKYTTVFAGSRKNDLNPHEPMTSESLESLQKEVDRLYEMF 211

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           V+L++ +RN+  +       G  + G +A ++GL D V    E   
Sbjct: 212 VQLIARNRNLSIEAIKSTEAGLYF-GEKAVEIGLADGVTTFFEFIN 256


>gi|167856276|ref|ZP_02479008.1| putative protease SohB [Haemophilus parasuis 29755]
 gi|167852600|gb|EDS23882.1| putative protease SohB [Haemophilus parasuis 29755]
          Length = 351

 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 107/255 (41%), Gaps = 13/255 (5%)

Query: 27  WSSHVEDNSPHVARIAIRGQI--EDSQELIERIER--ISRDDSATALIVSLSSPGGSAYA 82
              + E     +  +  +G I       L + I+            +++ L SPGG  + 
Sbjct: 93  GEENPEAEKSRLFVLNFQGDIQASGVSALRKEIDAVLALAKPEKDQVLLKLESPGGVVHG 152

Query: 83  GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  +Q++K++   +T  V ++AAS GY+++C +N IV+A  +++GS+GV+ Q P +
Sbjct: 153 YGLAASQLQRLKDKSIPLTVAVDKVAASGGYMMACVANKIVSAPFAVIGSVGVVAQVPNI 212

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  + +  + +   K   +   E   K  Q  Q  ++ ++  F + V++ R  P 
Sbjct: 213 HRLLKKHDIDVDVMTAGEYKRTVTFVGENTEKGKQKFQQELEETHRLFKQFVAQHR--PQ 270

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +A +  L+D +   +++             + + +    +     
Sbjct: 271 LDIEKIATGEHWFGQQAVEFNLVDELSTSDDLILDAVK------SQDVIEVKYQQKKKLS 324

Query: 262 DLKNLSISSLLEDTI 276
                 I S +E+ +
Sbjct: 325 QRVGEQIESSVENVV 339


>gi|209883973|ref|YP_002287830.1| periplasmic serine protease [Oligotropha carboxidovorans OM5]
 gi|209872169|gb|ACI91965.1| periplasmic serine protease [Oligotropha carboxidovorans OM5]
          Length = 448

 Score = 90.8 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 95/250 (38%), Gaps = 16/250 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSPG 77
               +  +A +++ G +                 ++ E +     D S   +I+ + S G
Sbjct: 66  TSITAERIAVVSVIGTLVSRSGYLDAASGLQAYDDIAEAVAVAMDDASVRGVILDVDSSG 125

Query: 78  GSAYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           G       +   I+ +   N KP+    +E A SA Y I+ A++ +  + T  VGSIGV+
Sbjct: 126 GEVGGLFDLVERIKAISSANAKPLWAVANESALSAAYAIASAADRLYVSRTGEVGSIGVV 185

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
             +        K G++   V +   K + +    ++ +A   +Q  VD  Y  F  LV+ 
Sbjct: 186 AVHIDESGADAKAGLAWTFVFAGDRKVDGNAHEPLSERARATIQADVDRLYFEFCGLVAG 245

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
           +R +  +      +  I+ G  A + GL D VG  +     + A     +       NP 
Sbjct: 246 NRGLTSETVRGT-NAAIYRGELAIRAGLADRVGTLDLAIAEMAADFDRMASAPRATSNPT 304

Query: 256 KNYWFCDLKN 265
                    N
Sbjct: 305 PRRISSMATN 314


>gi|90581225|ref|ZP_01237023.1| putative sohB protein, peptidase U7 family [Vibrio angustum S14]
 gi|90437596|gb|EAS62789.1| putative sohB protein, peptidase U7 family [Vibrio angustum S14]
          Length = 353

 Score = 90.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 102/257 (39%), Gaps = 18/257 (7%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80
             S      P +  I   G I+  +      E+   +      D    +++ L + GG  
Sbjct: 96  NGSLETSRDPRLFVIDFHGSIDAREVSSLREEITAILAVAIEGDE---VLLRLETGGGMV 152

Query: 81  YAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +        + ++K         V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P
Sbjct: 153 HGYGLASSQLDRLKAAGIKLTIAVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQLP 212

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                L K  +  + + +   K   + F E   KA +  Q  ++ ++  F   ++  R  
Sbjct: 213 NFNKVLKKNDIDYEQITAGEFKRTLTMFGENTDKAREKFQMEIEETHGLFKNFIAAHR-- 270

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           P      ++ G  W G +A ++GL+D +   +++             R++      +   
Sbjct: 271 PDLDLEKVATGEHWFGQQAFELGLVDQISTSDDLITEACK------DREVLKIKYVRRKK 324

Query: 260 FCDLKNLSISSLLEDTI 276
             +    + S   +  +
Sbjct: 325 LAEKLAGASSEAADSLL 341


>gi|330860996|emb|CBX71269.1| putative protease sohB [Yersinia enterocolitica W22703]
          Length = 305

 Score = 90.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 119/270 (44%), Gaps = 18/270 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGS 79
           + S  V    P +  I  +G I+        +E+   +   +  D    +++ L SPGG 
Sbjct: 47  AKSGAVAAVKPCLYVIDFKGSIDAHEVASLREEISAVLAVATAQDE---VLLRLESPGGV 103

Query: 80  AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +        +++++++   +T  V ++AAS GY+++C ++ I++A  +++GSIGV+ Q 
Sbjct: 104 VHGYGLAASQLERLRHKGIRLTVAVDKVAASGGYMMACVADRIISAPFAIIGSIGVVAQI 163

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P     L K  + ++   +   K   + F E   +  +  ++ ++ ++  F + V + R 
Sbjct: 164 PNFHRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVHQQR- 222

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P      ++ G  W G +AK+ GL+D +G  +++   +  +       ++      +  
Sbjct: 223 -PSLDIDAVATGEHWFGTQAKEKGLVDAIGTSDDLL--IAEM----DNHEVIGVRYSRRK 275

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
              D    S +  ++  +    Q   + L 
Sbjct: 276 RLMDRFTGSAAETVDRLLLRWWQRGEKPLL 305


>gi|332161870|ref|YP_004298447.1| putative periplasmic protease [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666100|gb|ADZ42744.1| putative periplasmic protease [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 348

 Score = 90.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 119/270 (44%), Gaps = 18/270 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGS 79
           + S  V    P +  I  +G I+        +E+   +   +  D    +++ L SPGG 
Sbjct: 90  AKSGAVAAVKPCLYVIDFKGSIDAHEVASLREEISAVLAVATAQDE---VLLRLESPGGV 146

Query: 80  AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +        +++++++   +T  V ++AAS GY+++C ++ I++A  +++GSIGV+ Q 
Sbjct: 147 VHGYGLAASQLERLRHKGIRLTVAVDKVAASGGYMMACVADRIISAPFAIIGSIGVVAQI 206

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P     L K  + ++   +   K   + F E   +  +  ++ ++ ++  F + V + R 
Sbjct: 207 PNFHRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVHQQR- 265

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P      ++ G  W G +AK+ GL+D +G  +++   +  +       ++      +  
Sbjct: 266 -PSLDIDAVATGEHWFGTQAKEKGLVDAIGTSDDLL--IAEM----DNHEVIGVRYSRRK 318

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
              D    S +  ++  +    Q   + L 
Sbjct: 319 RLMDRFTGSAAETVDRLLLRWWQRGEKPLL 348


>gi|323969481|gb|EGB64773.1| peptidase S49 [Escherichia coli TA007]
          Length = 501

 Score = 90.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 89/212 (41%), Gaps = 14/212 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D +   +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGMLVHRLGGMRPFSGMTGYDGIVACLQQAMADTAVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHLSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + +   K + + F  +  +  Q MQ  +D+++  F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPEEVRQDMQQRIDAAHRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
                ++  ++ G    + GL D +    +  
Sbjct: 256 VV-TGTEAAVFEGQSGIEAGLADELVNASDAI 286


>gi|89074059|ref|ZP_01160560.1| putative sohB protein, peptidase U7 family protein [Photobacterium
           sp. SKA34]
 gi|89050197|gb|EAR55708.1| putative sohB protein, peptidase U7 family protein [Photobacterium
           sp. SKA34]
          Length = 353

 Score = 90.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 102/253 (40%), Gaps = 14/253 (5%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80
             S      P +  I  RG I+  +      E+   +      D    +++ L + GG  
Sbjct: 96  NGSLETSRDPRLFVIDFRGSIDAREVSSLREEITAILAVAIEGDE---VLLRLETGGGMV 152

Query: 81  YAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +        + ++K         V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P
Sbjct: 153 HGYGLASSQLDRLKASGIKLTIAVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQLP 212

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                L K  +  + + +   K   + F E   KA +  Q  ++ ++  F   ++  R  
Sbjct: 213 NFNKVLKKNDIDYEQITAGEFKRTLTMFGENTDKAREKFQMEIEETHGLFKNFIAAHR-- 270

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           P      ++ G  W G +A  +GL+D +   +++            ++ ++         
Sbjct: 271 PDLDLEKVATGEHWFGQQAFDLGLVDQISTSDDLITEACKEREVLKVKYVR--RKKLAEK 328

Query: 260 FCDLKNLSISSLL 272
                + +  SLL
Sbjct: 329 LAGASSEAADSLL 341


>gi|120554450|ref|YP_958801.1| putative periplasmic protease [Marinobacter aquaeolei VT8]
 gi|120324299|gb|ABM18614.1| inner membrane peptidase, Serine peptidase, MEROPS family S49
           [Marinobacter aquaeolei VT8]
          Length = 353

 Score = 90.4 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 106/250 (42%), Gaps = 13/250 (5%)

Query: 29  SHVEDNSPHVARIAIRGQI-EDSQELIERIERIS---RDDSATALIVSLSSPGGSAYAGE 84
              E+ +  V  +   G I     + + R         +     +++ L S GG  +A  
Sbjct: 96  DATEEKTARVYVLDFDGDIKASDTDTLRRSVSAVLSVANPETDEVVIRLESGGGLVHAYG 155

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                + +++++   +T    ++AAS GY+++C ++ I+A+  +++GSIGV+ Q P    
Sbjct: 156 LAAAQLDRIRSKGIKLTACVDKVAASGGYMMACVADRIIASPFAVLGSIGVVAQLPNFHR 215

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL K  V  + + +   K   + F E   K  Q   + ++ ++  F   VSE R  P   
Sbjct: 216 FLKKNDVDFEVLTAGEHKRTLTIFGENTDKGRQKFLEDLEDTHVLFKEYVSERR--PDLD 273

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              +++G IW G  A  V LID +   +E        G       +   +  +     + 
Sbjct: 274 IQAVANGDIWFGKRALDVKLIDEIKTSDEYLIEACERG------DVISVSFQRKRTLPEK 327

Query: 264 KNLSISSLLE 273
             L+ S+ LE
Sbjct: 328 LGLATSTALE 337


>gi|170727245|ref|YP_001761271.1| putative periplasmic protease [Shewanella woodyi ATCC 51908]
 gi|169812592|gb|ACA87176.1| Peptidase S49 domain protein [Shewanella woodyi ATCC 51908]
          Length = 343

 Score = 90.4 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 107/261 (40%), Gaps = 14/261 (5%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQ--ELIERIER--ISRDDSATALIVSLSSPGGSAYAGEA 85
               + P V  +  +G I+ ++   L E I       +    A++ ++ S GG  +    
Sbjct: 90  KEPVSEPRVFVVDFKGSIDANEVSSLREEISAIIAIAEPGDEAIV-NVESGGGMVHGYGL 148

Query: 86  IFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
               + ++ +    +   V ++AAS GY+++C +N + AA  ++VGSIGV+ Q P     
Sbjct: 149 ASSQLDRLRQANIHLTICVDKVAASGGYMMACVANKVYAAPFAIVGSIGVVAQVPNFNKL 208

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K  +  +   +   K   + F E   +  +  Q  ++ ++  F   +S+ R  P  + 
Sbjct: 209 LKKHDIDYEQHTAGDFKRTLTVFGENTDEGREKFQQELEETHELFKGFISQYR--PELEL 266

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             ++ G  W G +A ++GLID +   ++V  +L         R +          F D  
Sbjct: 267 AKVATGEHWYGQQAIELGLIDAIATSDDVVMNLAK------ERTVIRVKYQLKKKFADKL 320

Query: 265 NLSISSLLEDTIPLMKQTKVQ 285
             + S  +      M +    
Sbjct: 321 AHAASLSVSSVFNKMAEKNQP 341


>gi|220921986|ref|YP_002497287.1| peptidase S49 [Methylobacterium nodulans ORS 2060]
 gi|219946592|gb|ACL56984.1| peptidase S49 [Methylobacterium nodulans ORS 2060]
          Length = 302

 Score = 90.4 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 15/229 (6%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATAL 69
           +  + +  V      VA + +RG I               ++      +   RD    A+
Sbjct: 47  ISNAQAKEVARREGAVAVLPLRGVIANRMNLMGDISGGTSAEAFRHAFQGALRDPEVKAI 106

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           ++ + SPGG+    + +   I   +  KP++  V   AASA Y I+ A++ +V   T  V
Sbjct: 107 VLDVDSPGGAVSGSDELSSMIFAARGTKPIVAHVDATAASAAYWIASAADEVVVTPTGAV 166

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV   +  +    +KLGV    + +   KA+      ++  A+   Q  V+++Y  F
Sbjct: 167 GSIGVFGIHDDLSGAREKLGVKRTIISAGRFKADGVA-GPLDDAALARRQARVEAAYDMF 225

Query: 190 VRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           VR V+ +RN+           G +   A A   G+ D +G  +E  Q L
Sbjct: 226 VRAVARNRNVSLSAVRDGFGQGDMVDAAPAVAEGMADRLGTLDETLQRL 274


>gi|82544274|ref|YP_408221.1| periplasmic protease [Shigella boydii Sb227]
 gi|187730620|ref|YP_001880101.1| putative periplasmic protease [Shigella boydii CDC 3083-94]
 gi|81245685|gb|ABB66393.1| putative protease [Shigella boydii Sb227]
 gi|187427612|gb|ACD06886.1| peptidase, S49 (protease IV) family [Shigella boydii CDC 3083-94]
 gi|320187510|gb|EFW62196.1| putative protease sohB [Shigella flexneri CDC 796-83]
 gi|332094825|gb|EGI99869.1| peptidase family S49 family protein [Shigella boydii 3594-74]
          Length = 349

 Score = 90.4 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 93  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 213 FLKSKYIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349


>gi|320176687|gb|EFW51725.1| putative protease sohB [Shigella dysenteriae CDC 74-1112]
          Length = 344

 Score = 90.4 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 88  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 147

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 148 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 207

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 208 FLKSKYIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 265

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 266 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 319

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 320 FTGSAAESADRLLLRWWQRGQKPLM 344


>gi|157160777|ref|YP_001458095.1| putative periplasmic protease [Escherichia coli HS]
 gi|170020364|ref|YP_001725318.1| putative periplasmic protease [Escherichia coli ATCC 8739]
 gi|188492727|ref|ZP_02999997.1| peptidase, S49 (protease IV) family [Escherichia coli 53638]
 gi|312971461|ref|ZP_07785636.1| peptidase family S49 family protein [Escherichia coli 1827-70]
 gi|157066457|gb|ABV05712.1| peptidase, S49 (protease IV) family [Escherichia coli HS]
 gi|169755292|gb|ACA77991.1| Peptidase S49 domain protein [Escherichia coli ATCC 8739]
 gi|188487926|gb|EDU63029.1| peptidase, S49 (protease IV) family [Escherichia coli 53638]
 gi|310336058|gb|EFQ01258.1| peptidase family S49 family protein [Escherichia coli 1827-70]
          Length = 349

 Score = 90.4 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 93  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 325 LTGSAAESADRLLLRWWQRGQKPLM 349


>gi|319405933|emb|CBI79564.1| putative capsid protein of prophage [Bartonella sp. AR 15-3]
          Length = 361

 Score = 90.4 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 85/219 (38%), Gaps = 16/219 (7%)

Query: 36  PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
            +VA + + G +                + L              A+++ + S GG A  
Sbjct: 66  NNVAILPVHGTLVRRSAWLGSLSGLTSYEGLSASFREAMAQPDVRAVLLDIDSGGGEAGG 125

Query: 83  GEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
              +    Q +     KP+    +E A SA Y I+C+++ I  A T +VGSIGV+  +  
Sbjct: 126 VFDLVEEFQTLSKQYNKPIWAHANEFACSAAYAIACSASQIWVARTGVVGSIGVVCAHLD 185

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
                +K G+    V     K   +P   ++  A   MQ      Y  FV  V+++R + 
Sbjct: 186 QSRADEKHGLKWTFVFEGDHKVHGNPHEPLSDTAQIKMQADCALLYEMFVDWVAQNRPLN 245

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
            D          + G +A K+GL D  G   +  ++L  
Sbjct: 246 ADAIRDTK-AETFIGTQALKLGLADAQGTLAQALEALTD 283


>gi|171913618|ref|ZP_02929088.1| signal peptide peptidase SppA, 36K type [Verrucomicrobium spinosum
           DSM 4136]
          Length = 276

 Score = 90.4 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 19/218 (8%)

Query: 37  HVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
           +VA I I G I               D + + E +++   D + T +++ + SPGG    
Sbjct: 62  NVAIIRIDGVIDKRLAALEAECFGGVDLEVIDEALQQAEHDRAVTHVVLDIHSPGGGVTG 121

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I ++   K V   V+  A SA Y ++  +++I AA +S +GSIGV        
Sbjct: 122 TPETAARIARLAQTKEVHAFVNCQACSAAYWLASQADVIAAAPSSCIGSIGVYMALLDET 181

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+  G ++  +K+   KA  + F ++  +   + Q  VDS Y  F + V+ SR I   
Sbjct: 182 RALEMEGYTVNLIKAGKHKAMGASFQKLTDEERAIFQGQVDSIYADFKKAVTASRRI--- 238

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                  G+ + G  A K+GL+DV+   + + +    L
Sbjct: 239 -ADSTMQGQSFDGKTALKLGLVDVL-TSDSLEEYAGRL 274


>gi|319408485|emb|CBI82140.1| putative capsid protein of prophage [Bartonella schoenbuchensis R1]
 gi|319409130|emb|CBI82774.1| putative capsid protein of prophage [Bartonella schoenbuchensis R1]
          Length = 280

 Score = 90.4 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 88/229 (38%), Gaps = 16/229 (6%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALI 70
            F           HVA + + G +                  L E  +         A++
Sbjct: 48  IFQAPPETYVVKNHVAILPVHGTLVRRGAWLSAASGLTSYNGLREAFQEAIGQPDVRAIL 107

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           + + S GG A     +  A + +     KP+    +EMA SA Y I+CA++ I  A T +
Sbjct: 108 LDIDSGGGEAGGVFDLVDAFRALSQEYNKPIWAHANEMACSAAYAIACAASQIWVARTGI 167

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
           VGSIGV+  +       +  G     V     K   +P   +  KA++ MQ      Y  
Sbjct: 168 VGSIGVVCAHLDQSRADEMDGYKWTFVYEGDHKVHGNPHEPLADKALEKMQADCALLYDM 227

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           FV LV+++R               + G +A ++GL D  G   +  ++L
Sbjct: 228 FVDLVAQNRPTSAQAIRDTK-AETFIGTQAVELGLADAQGTFAQALEAL 275


>gi|262278270|ref|ZP_06056055.1| periplasmic serine protease [Acinetobacter calcoaceticus RUH2202]
 gi|262258621|gb|EEY77354.1| periplasmic serine protease [Acinetobacter calcoaceticus RUH2202]
          Length = 320

 Score = 90.4 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 110/260 (42%), Gaps = 13/260 (5%)

Query: 33  DNSPHVARIAIRGQIEDS--QELIERIERISRDDSA--TALIVSLSSPGGSAYAGEAIFR 88
            N+  +  +  +G I+ S  + + E I  I     A    ++V L SPGG  +       
Sbjct: 54  KNNQKIFVLDFKGDIQASAVENIREEITLILATAKAGRDRVVVRLESPGGMVHGYGLAAA 113

Query: 89  AIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            + ++++    +   V ++AAS GY+++C +N I+ A  ++VGSIGV+ Q P     L +
Sbjct: 114 QLVRLRDAGFHLTICVDKVAASGGYMMACIANEIITAPFAIVGSIGVVAQVPNFNRLLKE 173

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
             V  +   +   K   + F E  P+     ++ +  ++  F   V + R  P      +
Sbjct: 174 HNVDFELYTAGQYKRTVTMFGENTPEGKAKFEEELQQTHVLFKHFVEKYR--PQLNVDKV 231

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G  W G +A  + L+D +   +E   +L A         +   N  +     +   L 
Sbjct: 232 ATGEHWYGEDALNLNLVDKLQTSDEYLLALLAQH------DVYVINTRRKATLGEKLGLQ 285

Query: 268 ISSLLEDTIPLMKQTKVQGL 287
            + + +  IP +    ++ L
Sbjct: 286 AAQMADSLIPAVMNKVMENL 305


>gi|333004586|gb|EGK24110.1| peptidase family S49 family protein [Shigella flexneri VA-6]
          Length = 349

 Score = 90.4 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 93  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349


>gi|261821585|ref|YP_003259691.1| periplasmic protease [Pectobacterium wasabiae WPP163]
 gi|261605598|gb|ACX88084.1| Peptidase S49 domain protein [Pectobacterium wasabiae WPP163]
          Length = 348

 Score = 90.1 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 103/246 (41%), Gaps = 10/246 (4%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATA-LIVSLSSPGGSAYA 82
           +     +   P +  +   G ++  +   L E I  +         +++ L SPGG  + 
Sbjct: 90  AKRGEEKSVKPCLYVLDFNGSMDAGEVSSLREEISAVLAVAKPKDEVLLRLESPGGVVHG 149

Query: 83  GEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  +Q+++         V ++AAS GY+++C ++ IVAA  ++VGSIGV+ Q P  
Sbjct: 150 YGLAASQLQRLRQGGVRLTVSVDKVAASGGYMMACVADRIVAAPFAIVGSIGVVAQIPNF 209

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L    + ++   +   K   + F E   +  +  ++ ++ ++  F   V + R  P 
Sbjct: 210 HRLLKNKDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNVTHTLFKDFVQQMR--PS 267

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +AK +GLID +G  +++   +  +   + +     +   K     
Sbjct: 268 LDIDSVATGEHWFGTQAKDLGLIDAIGTSDDLL--IAEMANHEVLS--VRYTRRKRLLDR 323

Query: 262 DLKNLS 267
              +  
Sbjct: 324 LTGSAG 329


>gi|123442462|ref|YP_001006441.1| putative periplasmic protease [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089423|emb|CAL12271.1| peptidase family U7 protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 348

 Score = 90.1 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 119/270 (44%), Gaps = 18/270 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGS 79
           + S  V    P +  I  +G I+        +E+   +   +  D    +++ L SPGG 
Sbjct: 90  AKSGAVAAVKPCLYVIDFKGSIDAHEVASLREEISAVLAVATAQDE---VLLRLESPGGV 146

Query: 80  AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +        +++++++   +T  V ++AAS GY+++C ++ I++A  +++GSIGV+ Q 
Sbjct: 147 VHGYGLAASQLERLRHKGIRLTVAVDKVAASGGYMMACVADRIISAPFAIIGSIGVVAQI 206

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P     L K  + ++   +   K   + F E   +  +  ++ ++ ++  F + V + R 
Sbjct: 207 PNFHRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVHQQR- 265

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P      ++ G  W G +AK+ GL+D +G  +++   +  +       ++      +  
Sbjct: 266 -PSLDIDAVATGEHWFGTQAKEKGLVDAIGTSDDLL--IAEM----DNHEVIGVRYSRRK 318

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
              D    S +  ++  +    Q   + L 
Sbjct: 319 RLMDRFTGSAAESVDRLLLRWWQRGEKPLL 348


>gi|312114779|ref|YP_004012375.1| peptidase S49 [Rhodomicrobium vannielii ATCC 17100]
 gi|311219908|gb|ADP71276.1| peptidase S49 [Rhodomicrobium vannielii ATCC 17100]
          Length = 285

 Score = 90.1 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 93/218 (42%), Gaps = 16/218 (7%)

Query: 35  SPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
             ++A + I G +                + + + I ++  D     +I+ + S GG A 
Sbjct: 63  EGNIAVLPIMGTLVRRLSWIEAESGLTSYKTITDDITQLMLDPYIRGVILEIDSYGGEAG 122

Query: 82  AGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
               +   I+K++ +  KP+    +E AASA Y I+CA+  +  A T  VGSIGV+  + 
Sbjct: 123 GVFDLADFIRKIQRQTGKPIYAHANENAASAAYAIACAAEKVWVARTGEVGSIGVICAHL 182

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                 +K G+    + +   K   +P   +  +A   +Q  VD  Y  FV+ V+  R +
Sbjct: 183 DQSQADEKAGLRWTFISAGERKTWGNPHEPLGDEARARVQADVDWLYDEFVKTVARYRGM 242

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
                       ++ G +A  VGL D  G  +E +  L
Sbjct: 243 RPADIRATK-ADVFRGEDAVGVGLADASGTLDECFDVL 279


>gi|145591098|ref|YP_001153100.1| peptidase S49 [Pyrobaculum arsenaticum DSM 13514]
 gi|145282866|gb|ABP50448.1| peptidase S49 [Pyrobaculum arsenaticum DSM 13514]
          Length = 552

 Score = 90.1 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 102/262 (38%), Gaps = 22/262 (8%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
             +      P +  + I   ++ S    +I  +  +++      +++ ++SPGG+  A E
Sbjct: 34  GQTPAAPPKPKIVLVPIDFVLDSSPVDGVIRDLVSLAQRKDVAGVVLVINSPGGTVSATE 93

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           A++ A+  +   K  +   + +AAS  Y ++ A+  I A  +S VGSIGV+      + F
Sbjct: 94  ALYSALAGLNKTKYAVV--NGLAASGAYYVAMAAEKIYATPSSWVGSIGVVAVMWPDEYF 151

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
            D   +      + P+K             +    + ++     FV+ V   R       
Sbjct: 152 YD---IPDYVYTTGPLKYYGK--------ELTDYYNDIERVRMNFVQAVLRGRAGRIKAD 200

Query: 205 LVLS-DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
             +     I+T  +A ++GL+D VGG  +  + +           +K++         + 
Sbjct: 201 PQVFETAAIFTAEDALRLGLVDAVGGVFDAVRDMAQRLG------LKEYEVKFLRELGNA 254

Query: 264 KNLSISSLLEDTIPLMKQTKVQ 285
                ++   D   LM  T V 
Sbjct: 255 SASPAAAFRVDLERLMNSTPVP 276


>gi|90423538|ref|YP_531908.1| peptidase S49 [Rhodopseudomonas palustris BisB18]
 gi|90105552|gb|ABD87589.1| peptidase S49 [Rhodopseudomonas palustris BisB18]
          Length = 262

 Score = 90.1 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 112/252 (44%), Gaps = 12/252 (4%)

Query: 38  VARIAIRGQIEDS----QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
           VA + +RG+I  S    Q+L+  + +++  + A ALI++L + GG+    E I   +  +
Sbjct: 17  VAVLRLRGEIAVSSAMIQDLLNVLPQLTPQEHA-ALIITLETAGGTLTCAENIMGWVDHL 75

Query: 94  KN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
                 PVI  + E   SAG  I+   + ++A  ++++G+ GV+  +P       +LG+ 
Sbjct: 76  YRRLSCPVIAVIEERCLSAGLAIAACCDHVIAQPSAMIGAFGVMMTWPGENRLRAQLGLL 135

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
               K++ +K   SP      +    +  V+   +  F  L+ + R I   +   + DGR
Sbjct: 136 ATVYKTTALKDFGSPHRAPTAEDDAAIHSVLQDIHGQFAELIRDRRGIGGGEIDEIFDGR 195

Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           + TG  A ++GL+D +GG E   Q L A GV               +      +   S  
Sbjct: 196 LITGRRALEIGLVDQLGGFETALQWLNANGVSVGEPPHMLI-----FLGNASPSGQSSGG 250

Query: 272 LEDTIPLMKQTK 283
           + + +  +  T 
Sbjct: 251 VLELLRTLVHTS 262


>gi|260776312|ref|ZP_05885207.1| SohB protein peptidase U7 family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607535|gb|EEX33800.1| SohB protein peptidase U7 family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 349

 Score = 90.1 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 108/261 (41%), Gaps = 14/261 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
                   PH+  +  +G I+        +E+   +      D    +++ L S GG  +
Sbjct: 93  GDLDSKREPHLFVLDFKGSIDAKEVASLREEVTAILAVAREGDE---VLLRLESGGGMVH 149

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + ++K  K P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P 
Sbjct: 150 GYGLASSQLDRIKAAKLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIAQLPN 209

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E   KA    +  ++ ++  F   + E R  P
Sbjct: 210 FNKVLKKYDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHGLFKDFIRERR--P 267

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
             +   ++ G  W G +A  +GL+D +   +++           +I  ++          
Sbjct: 268 ELELDKVATGEHWFGTQAHSLGLVDEIKTSDDLVVEACKDKTVLAIHYVE--KKKLTSKL 325

Query: 261 CDLKNLSISSLLEDTIPLMKQ 281
             L   +  ++L   I   ++
Sbjct: 326 AGLAGEAADNVLMKLIDRGQR 346


>gi|254240224|ref|ZP_04933546.1| hypothetical protein PA2G_00866 [Pseudomonas aeruginosa 2192]
 gi|126193602|gb|EAZ57665.1| hypothetical protein PA2G_00866 [Pseudomonas aeruginosa 2192]
          Length = 341

 Score = 90.1 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 107/256 (41%), Gaps = 18/256 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAY 81
           +    +    V  +   G I+ S       E+   +    +DD    +++ L S GG  +
Sbjct: 83  AKKHPEQKSRVYVLDFDGDIKASATEQLRHEVTAVLSMAGKDDE---VVLRLESGGGMVH 139

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + +++     +T    ++AAS GY+++C  + I++A  +++GSIGV+ Q P 
Sbjct: 140 GYGLAASQLARIRQAGVPLTVCVDKVAASGGYMMACIGDRILSAPFAILGSIGVVAQLPN 199

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           V   L K  +  + + +   K   + F E   K  +  Q+ ++ ++  F   V+  R  P
Sbjct: 200 VHRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLEVTHELFKNFVAHYR--P 257

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G +W G  A    L+D +   +E    L     ++ + +++          
Sbjct: 258 QLNMDEIATGEVWLGQAALGKLLVDELKTSDE---YLAEQARERDVYQVQFVERKS---L 311

Query: 261 CDLKNLSISSLLEDTI 276
            +   L+ S +++  +
Sbjct: 312 QERVGLAASVVIDRVL 327


>gi|227326049|ref|ZP_03830073.1| putative periplasmic protease [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 348

 Score = 90.1 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 102/247 (41%), Gaps = 12/247 (4%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATA-LIVSLSSPGGSAYA 82
           +     +   P +  +   G ++  +   L E I  +         +++ L SPGG  + 
Sbjct: 90  AKRGEEKSVKPCLYVLDFNGSMDAGEVSSLREEISAVLAVAKPKDEVLLRLESPGGVVHG 149

Query: 83  GEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  +Q+++         V ++AAS GY+++C ++ IVAA  ++VGSIGV+ Q P  
Sbjct: 150 YGLAASQLQRLRQGGVRLTVSVDKVAASGGYMMACVADRIVAAPFAIVGSIGVVAQIPNF 209

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L    + ++   +   K   + F E   +  +  ++ ++ ++  F   V + R  P 
Sbjct: 210 HRLLKNKDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNVTHTLFKDFVQQMR--PS 267

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE-VWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                ++ G  W G +AK +GL+D +G  ++ +   + +  V         +   K    
Sbjct: 268 LDIDSVATGEHWFGTQAKDLGLVDAIGTSDDLLIAEMASHEVLS-----VRYTRRKRLLD 322

Query: 261 CDLKNLS 267
               +  
Sbjct: 323 RLTGSAG 329


>gi|91782762|ref|YP_557968.1| serine peptidase [Burkholderia xenovorans LB400]
 gi|91686716|gb|ABE29916.1| protein C, Serine peptidase, MEROPS family S49 [Burkholderia
           xenovorans LB400]
          Length = 293

 Score = 90.1 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 87/218 (39%), Gaps = 14/218 (6%)

Query: 38  VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           VA + I G              +     +   +     D+S  A+++ + SPGG      
Sbjct: 77  VAIVPIEGTLVHKLGELRPYSGMTGYDGIRANLSMAMADESVRAIVLDIDSPGGEVAGCF 136

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +  +I   ++ KP+     E A SA Y I+ A++ I+   T   GS+GV+  +      
Sbjct: 137 DLVDSIYAARDVKPIWAICTESAYSAAYAIATAASRIIVPRTGGTGSVGVICMHVDFSQA 196

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K G+ ++ +     KA+ S    ++  A    Q  VD+    FV  V+ +R +     
Sbjct: 197 LTKAGIEVELIYFGDKKADGSDMKPLSKDARARFQSDVDAMGQLFVETVARNRGLTTANV 256

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
                G  + GA   ++G  D V   +E + SL     
Sbjct: 257 RGTQAGT-FLGAAGVEIGFADAVMSPDEAFASLLDELG 293


>gi|293609754|ref|ZP_06692056.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828206|gb|EFF86569.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 320

 Score = 90.1 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 110/260 (42%), Gaps = 13/260 (5%)

Query: 33  DNSPHVARIAIRGQIEDS--QELIERIERISRDDSA--TALIVSLSSPGGSAYAGEAIFR 88
            N+  +  +  +G I+ S  + L E I  I     A    ++V L SPGG  +       
Sbjct: 54  KNNQKIFVLDFKGDIQASAVENLREEITLILATAKAGRDRIVVRLESPGGMVHGYGLAAA 113

Query: 89  AIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            + ++++    +   V ++AAS GY+++C +N I+AA  ++VGSIGV+ Q P     L +
Sbjct: 114 QLVRLRDAGFHLTICVDKVAASGGYMMACIANEIIAAPFAIVGSIGVVAQVPNFNRLLKE 173

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
             V  +   +   K   + F E  P+     ++ +  ++  F   V + R  P      +
Sbjct: 174 HNVDFELYTAGQYKRTVTMFGENTPEGKAKFEEELQQTHVLFKHFVEKYR--PQLNVDKV 231

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G  W G +A  + L+D +   +E   +L           +   N  K     +   L 
Sbjct: 232 ATGEHWYGEDALDLNLVDKLQTSDEYLLALL------PQHDVYVINTRKKATLGEKLGLQ 285

Query: 268 ISSLLEDTIPLMKQTKVQGL 287
            + + +  IP +    ++ L
Sbjct: 286 AAQMADSLIPTVMSKVMESL 305


>gi|194435042|ref|ZP_03067281.1| peptidase, S49 (protease IV) family [Shigella dysenteriae 1012]
 gi|194416699|gb|EDX32829.1| peptidase, S49 (protease IV) family [Shigella dysenteriae 1012]
 gi|320181714|gb|EFW56625.1| putative protease sohB [Shigella boydii ATCC 9905]
 gi|332098384|gb|EGJ03357.1| peptidase family S49 family protein [Shigella dysenteriae 155-74]
          Length = 349

 Score = 90.1 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 93  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 271 IDQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349


>gi|49087080|gb|AAT51414.1| PA1832 [synthetic construct]
          Length = 342

 Score = 90.1 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 107/256 (41%), Gaps = 18/256 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAY 81
           +    +    V  +   G I+ S       E+   +    +DD    +++ L S GG  +
Sbjct: 83  AKKHPEQKSRVYVLDFDGDIKASATEQLRHEVTAVLSMAGKDDE---VVLRLESGGGMVH 139

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + +++     +T    ++AAS GY+++C  + I++A  +++GSIGV+ Q P 
Sbjct: 140 GYGLAASQLARIRQAGVPLTVCVDKVAASGGYMMACIGDRILSAPFAILGSIGVVAQLPN 199

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           V   L K  +  + + +   K   + F E   K  +  Q+ ++ ++  F   V+  R  P
Sbjct: 200 VHRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLEVTHELFKNFVAHYR--P 257

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G +W G  A    L+D +   +E    L     ++ + +++          
Sbjct: 258 QLNMDEIATGEVWLGQAALGKLLVDELKTSDE---YLAEQARERDVYQVQFVERKS---L 311

Query: 261 CDLKNLSISSLLEDTI 276
            +   L+ S +++  +
Sbjct: 312 QERVGLAASVVIDRVL 327


>gi|93006012|ref|YP_580449.1| putative periplasmic protease [Psychrobacter cryohalolentis K5]
 gi|92393690|gb|ABE74965.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Psychrobacter
           cryohalolentis K5]
          Length = 326

 Score = 90.1 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 104/261 (39%), Gaps = 12/261 (4%)

Query: 37  HVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            V  +   G I+ +      +E+   I   ++ D    ++V L S GG  +        +
Sbjct: 69  QVFVLDFDGDIKATAVKHLREEISTLISTANKGDE---VVVRLESGGGVVHGYGLAAAQL 125

Query: 91  QKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
            ++K+    +T    ++AAS GY+++C ++ IVAA  +++GSIGV+ Q P    +L    
Sbjct: 126 ARLKDAGLKLTVCVDKVAASGGYMMACVADNIVAAPFAIIGSIGVVSQLPNFHKWLKNHD 185

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           V  +   +   K   + F E + +     Q+ ++ ++  F   V+  R +       ++ 
Sbjct: 186 VDYEMFTAGDYKRTVTVFGENDDEDRAKYQEELEQTHELFKHFVNRYRGML--DVDKVAT 243

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           G  W G +A  + L+D +   +             ++   +     +          +IS
Sbjct: 244 GEHWYGEDALHLNLVDKLQTSDSYLLERMENNEVYALHSRQKPTLAEKLGLSQAAEATIS 303

Query: 270 SLLEDTIPLMKQTKVQGLWAV 290
             ++     + +  +     +
Sbjct: 304 MAVDKLPDALARFDLNSRLNI 324


>gi|26247601|ref|NP_753641.1| putative periplasmic protease [Escherichia coli CFT073]
 gi|227886299|ref|ZP_04004104.1| S49 family SohB endopeptidase [Escherichia coli 83972]
 gi|300982409|ref|ZP_07176106.1| putative signal peptide peptidase SppA [Escherichia coli MS 45-1]
 gi|301046935|ref|ZP_07194049.1| putative signal peptide peptidase SppA [Escherichia coli MS 185-1]
 gi|331646595|ref|ZP_08347698.1| putative protease SohB [Escherichia coli M605]
 gi|331657319|ref|ZP_08358281.1| putative protease SohB [Escherichia coli TA206]
 gi|26108003|gb|AAN80203.1|AE016760_62 Possible protease sohB [Escherichia coli CFT073]
 gi|227836503|gb|EEJ46969.1| S49 family SohB endopeptidase [Escherichia coli 83972]
 gi|281178462|dbj|BAI54792.1| putative protease [Escherichia coli SE15]
 gi|300301161|gb|EFJ57546.1| putative signal peptide peptidase SppA [Escherichia coli MS 185-1]
 gi|300408747|gb|EFJ92285.1| putative signal peptide peptidase SppA [Escherichia coli MS 45-1]
 gi|307553330|gb|ADN46105.1| possible protease sohB [Escherichia coli ABU 83972]
 gi|315294752|gb|EFU54095.1| putative signal peptide peptidase SppA [Escherichia coli MS 153-1]
 gi|330911137|gb|EGH39647.1| putative protease sohB [Escherichia coli AA86]
 gi|331045347|gb|EGI17474.1| putative protease SohB [Escherichia coli M605]
 gi|331055567|gb|EGI27576.1| putative protease SohB [Escherichia coli TA206]
          Length = 349

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 93  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349


>gi|24349038|gb|AAN55947.1|AE015732_5 sohB protein, peptidase U7 family [Shewanella oneidensis MR-1]
          Length = 342

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 111/244 (45%), Gaps = 10/244 (4%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEAI 86
              ++   V  +  +G I+ ++   L E I  I    +    ++V++ S GG  +     
Sbjct: 90  DEGESKGKVFVVDFKGSIDAAEVASLREEISAILTIAEKGDEVVVNVESGGGMVHGYGLA 149

Query: 87  FRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
              + ++ +   P+   V ++AAS GY+++C +N + AA  ++VGSIGV+ Q P     L
Sbjct: 150 SSQLDRLRQADIPLTVCVDKVAASGGYMMACVANKVYAAPFAIVGSIGVVAQLPNFNRLL 209

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K  +  +   +   K   + F E   +  Q  Q  ++ ++  F   VS+ R  P     
Sbjct: 210 KKHEIDYEQHTAGDFKRTLTVFGENTDEGRQKFQQELEETHVLFKAFVSKYR--PQLDLA 267

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            ++ G  W G +A ++GLID +   ++V   L  L  ++++ K++ +   K         
Sbjct: 268 KVATGEHWYGQQAIELGLIDAISTSDDV---LMHLAGERTVYKLR-YQVRKKLADKIAHG 323

Query: 266 LSIS 269
            S+S
Sbjct: 324 ASLS 327


>gi|261867946|ref|YP_003255868.1| putative periplasmic protease [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413278|gb|ACX82649.1| S49 family peptidase [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 352

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 113/264 (42%), Gaps = 17/264 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80
             +  E+  P +  +  +G I  S+      E+   I+          ++V L SPGG  
Sbjct: 95  GENPAEERKPTLYVLHFKGDISASETAALREEISAIIQVA---KPTDEVLVCLESPGGVV 151

Query: 81  YAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +        + ++K R   +T  V ++AAS GY+++C ++ IV+A  +++GSIGV+ Q P
Sbjct: 152 HGYGLAASQLMRLKQRNIRLTVAVDKVAASGGYMMACVADKIVSAPFAIIGSIGVVAQIP 211

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            V   L K  V +  + +   K   + F E   K  Q  Q  ++ ++  F + V+++R  
Sbjct: 212 NVHRLLKKHDVDVDVMTAGEYKRTMTIFGENTEKGKQKFQQELEETHQLFKQFVAQNR-- 269

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           P+     ++ G  W G +A  + L+D +   +++            ++        K   
Sbjct: 270 PHLDLDKVATGEHWFGQQALNLNLVDEIMTSDDLLLQAMKEKSVIGVKYAV-----KKSL 324

Query: 260 FCDLKNLSISSLLEDTIPLMKQTK 283
              +   +  S     +  +K+ +
Sbjct: 325 LQKVGKQAEESADNIALRWLKKNE 348


>gi|215486567|ref|YP_002328998.1| putative periplasmic protease [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312966800|ref|ZP_07781018.1| peptidase family S49 family protein [Escherichia coli 2362-75]
 gi|215264639|emb|CAS09010.1| predicted inner membrane peptidase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312288264|gb|EFR16166.1| peptidase family S49 family protein [Escherichia coli 2362-75]
 gi|320195715|gb|EFW70340.1| putative protease sohB [Escherichia coli WV_060327]
 gi|323964610|gb|EGB60083.1| peptidase S49 [Escherichia coli M863]
 gi|323977096|gb|EGB72183.1| peptidase S49 [Escherichia coli TW10509]
 gi|327253963|gb|EGE65592.1| peptidase family S49 family protein [Escherichia coli STEC_7v]
          Length = 349

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 93  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349


>gi|91210563|ref|YP_540549.1| putative periplasmic protease [Escherichia coli UTI89]
 gi|110641504|ref|YP_669234.1| putative periplasmic protease [Escherichia coli 536]
 gi|117623532|ref|YP_852445.1| putative periplasmic protease [Escherichia coli APEC O1]
 gi|191170896|ref|ZP_03032447.1| peptidase, S49 (protease IV) family [Escherichia coli F11]
 gi|218558258|ref|YP_002391171.1| periplasmic protease [Escherichia coli S88]
 gi|237705296|ref|ZP_04535777.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|300971798|ref|ZP_07171632.1| putative signal peptide peptidase SppA [Escherichia coli MS 200-1]
 gi|306813705|ref|ZP_07447886.1| putative periplasmic protease [Escherichia coli NC101]
 gi|91072137|gb|ABE07018.1| possible protease SohB [Escherichia coli UTI89]
 gi|110343096|gb|ABG69333.1| possible protease SohB [Escherichia coli 536]
 gi|115512656|gb|ABJ00731.1| possible protease SohB [Escherichia coli APEC O1]
 gi|190908628|gb|EDV68216.1| peptidase, S49 (protease IV) family [Escherichia coli F11]
 gi|218365027|emb|CAR02730.1| putative inner membrane peptidase [Escherichia coli S88]
 gi|222033076|emb|CAP75816.1| protease sohB [Escherichia coli LF82]
 gi|226900053|gb|EEH86312.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|294493202|gb|ADE91958.1| peptidase, S49 (protease IV) family [Escherichia coli IHE3034]
 gi|300309304|gb|EFJ63824.1| putative signal peptide peptidase SppA [Escherichia coli MS 200-1]
 gi|305852979|gb|EFM53424.1| putative periplasmic protease [Escherichia coli NC101]
 gi|307627154|gb|ADN71458.1| putative periplasmic protease [Escherichia coli UM146]
 gi|312945906|gb|ADR26733.1| putative periplasmic protease [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315289110|gb|EFU48508.1| putative signal peptide peptidase SppA [Escherichia coli MS 110-3]
 gi|323949125|gb|EGB45017.1| peptidase S49 [Escherichia coli H252]
 gi|323953857|gb|EGB49658.1| peptidase S49 [Escherichia coli H263]
 gi|324006118|gb|EGB75337.1| putative signal peptide peptidase SppA [Escherichia coli MS 57-2]
 gi|324011315|gb|EGB80534.1| putative signal peptide peptidase SppA [Escherichia coli MS 60-1]
          Length = 349

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 114/265 (43%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
              V D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 93  GEVVTDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349


>gi|113969812|ref|YP_733605.1| putative periplasmic protease [Shewanella sp. MR-4]
 gi|113884496|gb|ABI38548.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Shewanella sp.
           MR-4]
          Length = 338

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 110/240 (45%), Gaps = 10/240 (4%)

Query: 34  NSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEAIFRAI 90
           +   V  I  +G I+ ++   L E I  I    +    ++V++ S GG  +        +
Sbjct: 90  SKGKVFVIDFKGSIDAAEVASLREEISAILTIAEKGDEVVVNVESGGGMVHGYGLASSQL 149

Query: 91  QKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
            ++ +   P+   V ++AAS GY+++C +N + AA  ++VGSIGV+ Q P     L K  
Sbjct: 150 DRLRQAEIPLTICVDKVAASGGYMMACVANKVYAAPFAIVGSIGVVAQLPNFNRLLKKHE 209

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +  +   +   K   + F E   +  Q  Q  ++ ++  F   VS+ R  P      ++ 
Sbjct: 210 IDYEQHTAGDFKRTLTVFGENTDEGRQKFQQELEETHVLFKAFVSKYR--PQLDLAKVAT 267

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           G  W G +A ++GLID +   ++V   L  L  ++++ K++ +   K          S+S
Sbjct: 268 GEHWYGQQAIELGLIDAISTSDDV---LMQLAGERTVYKLR-YQVRKKLADKIAHGASLS 323


>gi|331006608|ref|ZP_08329895.1| SohB protein, peptidase U7 family [gamma proteobacterium IMCC1989]
 gi|330419592|gb|EGG93971.1| SohB protein, peptidase U7 family [gamma proteobacterium IMCC1989]
          Length = 359

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 16/242 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81
           S+    N   V  +   G I+ S      +E+   +     +D    +++ L S GG  +
Sbjct: 102 SNADNKNKKRVYIVDFDGDIKASAVDNLREEVTAILSLAREEDE---VVIRLESAGGMVH 158

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           +       + +VK++K  +T    ++AAS GY+++C ++ I AA  +++GSIGV+ Q P 
Sbjct: 159 SYGLASSQLARVKDKKIPLTVCVDKVAASGGYMMACVADTICAAPFAILGSIGVVAQLPN 218

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  V  +   +   K   + F E   K  +   + +++++  F   V E R  P
Sbjct: 219 FHRLLKKNDVDFELFTAGEYKRTLTMFGENTDKGREKFTEDLETTHELFKDFVREQR--P 276

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G IW G++AK+  L+D +   ++   S     VDQ+      +   K++  
Sbjct: 277 VVDIDKVATGEIWFGSQAKEQQLVDRLTTSDDYIVS----QVDQADVYHVQYTTKKSFTE 332

Query: 261 CD 262
             
Sbjct: 333 RL 334


>gi|218689262|ref|YP_002397474.1| putative periplasmic protease [Escherichia coli ED1a]
 gi|218426826|emb|CAR07676.2| putative inner membrane peptidase [Escherichia coli ED1a]
          Length = 349

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 117/267 (43%), Gaps = 15/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
              V D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 93  GEVVTDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL      + +  ++     +      L
Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME---GREVVNVRYMQRKR------L 321

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWAV 290
            +    S  E    L+ +   +G  ++
Sbjct: 322 IDRFTGSAAESADRLLLRWWQRGQKSL 348


>gi|157157433|ref|YP_001462568.1| putative periplasmic protease [Escherichia coli E24377A]
 gi|300926654|ref|ZP_07142430.1| putative signal peptide peptidase SppA [Escherichia coli MS 182-1]
 gi|301327003|ref|ZP_07220292.1| putative signal peptide peptidase SppA [Escherichia coli MS 78-1]
 gi|157079463|gb|ABV19171.1| peptidase, S49 (protease IV) family [Escherichia coli E24377A]
 gi|300417320|gb|EFK00631.1| putative signal peptide peptidase SppA [Escherichia coli MS 182-1]
 gi|300846386|gb|EFK74146.1| putative signal peptide peptidase SppA [Escherichia coli MS 78-1]
          Length = 349

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 93  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   +   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGDNTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349


>gi|323187503|gb|EFZ72812.1| peptidase family S49 family protein [Escherichia coli RN587/1]
          Length = 349

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 93  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 325 FTGSAAKSADRLLLRWWQRGQKPLM 349


>gi|320659187|gb|EFX26776.1| putative inner membrane peptidase [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 349

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 93  GEVSTDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349


>gi|240849986|ref|YP_002971378.1| phage protein Gp18 [Bartonella grahamii as4aup]
 gi|240267109|gb|ACS50697.1| phage protein Gp18 [Bartonella grahamii as4aup]
          Length = 354

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 84/220 (38%), Gaps = 16/220 (7%)

Query: 35  SPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
             ++A I + G +                + L              A+++ + S GG A 
Sbjct: 59  QNNIAIIPVHGTLVRRGAWLGALSGLTSYEGLGASFREAIAQPDVRAVLLDIDSGGGEAG 118

Query: 82  AGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
               +    Q +  +  KP+    +E A SA Y I+C+++ I  A T +VGSIGV+  + 
Sbjct: 119 GVFDLVEEFQALSKKYDKPIWAHANEFACSAAYAIACSASQIWVARTGVVGSIGVVCAHL 178

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                 +K G     V     K   +P   ++  A   MQ      Y  FV LV+++R +
Sbjct: 179 DQSRADEKHGHKWTFVFEGDHKVHGNPHEPLSDTAQIKMQADCALLYEMFVDLVAQNRRL 238

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
                        + G +A  +GL D  G   +  ++L  
Sbjct: 239 NAAAIRDTK-AETFIGNQAITLGLADAQGTLAQALEALTD 277


>gi|319406644|emb|CBI80285.1| putative capsid protein of prophage [Bartonella sp. 1-1C]
          Length = 348

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 85/220 (38%), Gaps = 16/220 (7%)

Query: 35  SPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
             +VA + + G +                + L              A+++ + S GG A 
Sbjct: 59  QNNVAILPVHGTLVRRSAWLGALSGLTSYEGLSASFREAMAQPDVRAVLLDIDSGGGEAG 118

Query: 82  AGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
               +    Q +  +  KP+    +E A SA Y I+C+++ I  A T +VGSIGV+  + 
Sbjct: 119 GVFDLVEEFQALSKQYGKPIWAHANEFACSAAYAIACSASQIWVARTGVVGSIGVVCAHL 178

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                 +K G     V     K   +P   +  +A   MQ      Y  FV LV+++R +
Sbjct: 179 DQSYADEKQGHKWTFVFEGDHKVHGNPHEPLADEAKIKMQADCALLYEMFVDLVAKNRAM 238

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
                        + G++A  +GL D  G   +  ++L  
Sbjct: 239 SAAAIRETK-AETFIGSQAITLGLADAQGTLAQALEALTD 277


>gi|313668036|ref|YP_004048320.1| secreted protease [Neisseria lactamica ST-640]
 gi|313005498|emb|CBN86934.1| putative secreted protease [Neisseria lactamica 020-06]
          Length = 350

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 110/266 (41%), Gaps = 18/266 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80
                E   P +  +   G +          E+   +     +D    +++ L SPGG  
Sbjct: 94  GGKSAETQKPRLFVLDFDGDLYARAVGALRNEITAVLSIARPEDE---VLLRLESPGGVV 150

Query: 81  YAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +        +++++ R   +T  V ++AAS GY+++C ++ IV+A  ++VGS+GV+ + P
Sbjct: 151 HGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFAIVGSVGVVAEVP 210

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            +   L K  + +  + +   K   +   E   K  Q  +  ++ ++  F + VSE+R  
Sbjct: 211 NIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQLFKQFVSENR-- 268

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           P      ++ G  W G +A  + LID +   +++    +        +++ +    +   
Sbjct: 269 PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NKQLIEVKYQEKQS 322

Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQ 285
                 L   + +E+    +   +  
Sbjct: 323 LIQRIGLQAEASVENLFAKLVNRRAD 348


>gi|15801907|ref|NP_287927.1| putative periplasmic protease [Escherichia coli O157:H7 EDL933]
 gi|15831098|ref|NP_309871.1| periplasmic protease [Escherichia coli O157:H7 str. Sakai]
 gi|168751161|ref|ZP_02776183.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758357|ref|ZP_02783364.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC4401]
 gi|168763580|ref|ZP_02788587.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771271|ref|ZP_02796278.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775081|ref|ZP_02800088.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783775|ref|ZP_02808782.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790072|ref|ZP_02815079.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC869]
 gi|168801619|ref|ZP_02826626.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC508]
 gi|195939206|ref|ZP_03084588.1| putative periplasmic protease [Escherichia coli O157:H7 str.
           EC4024]
 gi|208811051|ref|ZP_03252884.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815761|ref|ZP_03256940.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819606|ref|ZP_03259926.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397450|ref|YP_002270326.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC4115]
 gi|217329117|ref|ZP_03445197.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           TW14588]
 gi|254792860|ref|YP_003077697.1| putative periplasmic protease [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224254|ref|ZP_05938535.1| predicted inner membrane peptidase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261257490|ref|ZP_05950023.1| predicted inner membrane peptidase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291282359|ref|YP_003499177.1| Peptidase, S49 (Protease IV) family [Escherichia coli O55:H7 str.
           CB9615]
 gi|331652312|ref|ZP_08353331.1| putative protease SohB [Escherichia coli M718]
 gi|12515525|gb|AAG56543.1|AE005380_2 putative protease [Escherichia coli O157:H7 str. EDL933]
 gi|13361309|dbj|BAB35267.1| putative protease [Escherichia coli O157:H7 str. Sakai]
 gi|187769295|gb|EDU33139.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014793|gb|EDU52915.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC4113]
 gi|188998931|gb|EDU67917.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354830|gb|EDU73249.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359971|gb|EDU78390.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366260|gb|EDU84676.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370448|gb|EDU88864.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC869]
 gi|189376289|gb|EDU94705.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC508]
 gi|208724557|gb|EDZ74265.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208732409|gb|EDZ81097.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739729|gb|EDZ87411.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158850|gb|ACI36283.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           EC4115]
 gi|209771988|gb|ACI84306.1| putative protease [Escherichia coli]
 gi|209771990|gb|ACI84307.1| putative protease [Escherichia coli]
 gi|209771992|gb|ACI84308.1| putative protease [Escherichia coli]
 gi|209771994|gb|ACI84309.1| putative protease [Escherichia coli]
 gi|209771996|gb|ACI84310.1| putative protease [Escherichia coli]
 gi|217317556|gb|EEC25984.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str.
           TW14588]
 gi|254592260|gb|ACT71621.1| predicted inner membrane peptidase [Escherichia coli O157:H7 str.
           TW14359]
 gi|290762232|gb|ADD56193.1| Peptidase, S49 (Protease IV) family [Escherichia coli O55:H7 str.
           CB9615]
 gi|320189977|gb|EFW64629.1| putative protease sohB [Escherichia coli O157:H7 str. EC1212]
 gi|320637166|gb|EFX06992.1| putative inner membrane peptidase [Escherichia coli O157:H7 str.
           G5101]
 gi|320642532|gb|EFX11780.1| putative inner membrane peptidase [Escherichia coli O157:H- str.
           493-89]
 gi|320647885|gb|EFX16593.1| putative inner membrane peptidase [Escherichia coli O157:H- str. H
           2687]
 gi|320653487|gb|EFX21592.1| putative inner membrane peptidase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320663980|gb|EFX31167.1| putative inner membrane peptidase [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326341068|gb|EGD64861.1| putative protease sohB [Escherichia coli O157:H7 str. 1125]
 gi|326343309|gb|EGD67076.1| putative protease sohB [Escherichia coli O157:H7 str. 1044]
 gi|331050590|gb|EGI22648.1| putative protease SohB [Escherichia coli M718]
          Length = 349

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 93  GEVSTDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349


>gi|309793256|ref|ZP_07687683.1| putative signal peptide peptidase SppA [Escherichia coli MS 145-7]
 gi|308122843|gb|EFO60105.1| putative signal peptide peptidase SppA [Escherichia coli MS 145-7]
          Length = 354

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 98  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 157

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 158 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 217

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 218 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 275

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 276 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 329

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 330 FTGSAAESADRLLLRWWQRGQKPLM 354


>gi|16129233|ref|NP_415788.1| predicted inner membrane peptidase; multicopy suppressor of
           htrA(degP) [Escherichia coli str. K-12 substr. MG1655]
 gi|24112669|ref|NP_707179.1| putative periplasmic protease [Shigella flexneri 2a str. 301]
 gi|30062794|ref|NP_836965.1| putative periplasmic protease [Shigella flexneri 2a str. 2457T]
 gi|74312359|ref|YP_310778.1| putative periplasmic protease [Shigella sonnei Ss046]
 gi|89108118|ref|AP_001898.1| predicted inner membrane peptidase [Escherichia coli str. K-12
           substr. W3110]
 gi|170080949|ref|YP_001730269.1| inner membrane peptidase [Escherichia coli str. K-12 substr. DH10B]
 gi|170682481|ref|YP_001743913.1| putative periplasmic protease [Escherichia coli SMS-3-5]
 gi|191166672|ref|ZP_03028500.1| peptidase, S49 (protease IV) family [Escherichia coli B7A]
 gi|193062652|ref|ZP_03043746.1| peptidase, S49 (protease IV) family [Escherichia coli E22]
 gi|193069952|ref|ZP_03050900.1| peptidase, S49 (protease IV) family [Escherichia coli E110019]
 gi|194426078|ref|ZP_03058634.1| peptidase, S49 (protease IV) family [Escherichia coli B171]
 gi|194436931|ref|ZP_03069030.1| peptidase, S49 (protease IV) family [Escherichia coli 101-1]
 gi|209918511|ref|YP_002292595.1| putative periplasmic protease [Escherichia coli SE11]
 gi|218553824|ref|YP_002386737.1| putative periplasmic protease [Escherichia coli IAI1]
 gi|218694843|ref|YP_002402510.1| putative periplasmic protease [Escherichia coli 55989]
 gi|238900505|ref|YP_002926301.1| putative inner membrane peptidase [Escherichia coli BW2952]
 gi|253773731|ref|YP_003036562.1| periplasmic protease [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161352|ref|YP_003044460.1| putative periplasmic protease [Escherichia coli B str. REL606]
 gi|256023020|ref|ZP_05436885.1| putative periplasmic protease [Escherichia sp. 4_1_40B]
 gi|260843619|ref|YP_003221397.1| putative inner membrane peptidase [Escherichia coli O103:H2 str.
           12009]
 gi|260854969|ref|YP_003228860.1| putative inner membrane peptidase [Escherichia coli O26:H11 str.
           11368]
 gi|260867720|ref|YP_003234122.1| putative inner membrane peptidase [Escherichia coli O111:H- str.
           11128]
 gi|293414604|ref|ZP_06657253.1| protease sohB [Escherichia coli B185]
 gi|293433631|ref|ZP_06662059.1| protease sohB [Escherichia coli B088]
 gi|300820143|ref|ZP_07100312.1| putative signal peptide peptidase SppA [Escherichia coli MS 107-1]
 gi|300822566|ref|ZP_07102705.1| putative signal peptide peptidase SppA [Escherichia coli MS 119-7]
 gi|300919452|ref|ZP_07135953.1| putative signal peptide peptidase SppA [Escherichia coli MS 115-1]
 gi|300927778|ref|ZP_07143342.1| putative signal peptide peptidase SppA [Escherichia coli MS 187-1]
 gi|300951917|ref|ZP_07165721.1| putative signal peptide peptidase SppA [Escherichia coli MS 116-1]
 gi|300955862|ref|ZP_07168201.1| putative signal peptide peptidase SppA [Escherichia coli MS 175-1]
 gi|301022792|ref|ZP_07186634.1| putative signal peptide peptidase SppA [Escherichia coli MS 196-1]
 gi|301647234|ref|ZP_07247053.1| putative signal peptide peptidase SppA [Escherichia coli MS 146-1]
 gi|307137909|ref|ZP_07497265.1| putative periplasmic protease [Escherichia coli H736]
 gi|307309975|ref|ZP_07589625.1| Peptidase S49 domain protein [Escherichia coli W]
 gi|331641830|ref|ZP_08342965.1| putative protease SohB [Escherichia coli H736]
 gi|331667656|ref|ZP_08368520.1| putative protease SohB [Escherichia coli TA271]
 gi|331672799|ref|ZP_08373585.1| putative protease SohB [Escherichia coli TA280]
 gi|331677049|ref|ZP_08377745.1| putative protease SohB [Escherichia coli H591]
 gi|84028736|sp|P0AG14|SOHB_ECOLI RecName: Full=Probable protease sohB
 gi|84028737|sp|P0AG15|SOHB_SHIFL RecName: Full=Probable protease sohB
 gi|1742067|dbj|BAA14809.1| predicted inner membrane peptidase [Escherichia coli str. K12
           substr. W3110]
 gi|1787527|gb|AAC74354.1| predicted inner membrane peptidase; multicopy suppressor of
           htrA(degP) [Escherichia coli str. K-12 substr. MG1655]
 gi|24051584|gb|AAN42886.1| putative protease [Shigella flexneri 2a str. 301]
 gi|30041042|gb|AAP16772.1| putative protease [Shigella flexneri 2a str. 2457T]
 gi|73855836|gb|AAZ88543.1| putative protease [Shigella sonnei Ss046]
 gi|169888784|gb|ACB02491.1| predicted inner membrane peptidase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170520199|gb|ACB18377.1| peptidase, S49 (protease IV) family [Escherichia coli SMS-3-5]
 gi|190903321|gb|EDV63042.1| peptidase, S49 (protease IV) family [Escherichia coli B7A]
 gi|192931774|gb|EDV84374.1| peptidase, S49 (protease IV) family [Escherichia coli E22]
 gi|192956705|gb|EDV87160.1| peptidase, S49 (protease IV) family [Escherichia coli E110019]
 gi|194416133|gb|EDX32399.1| peptidase, S49 (protease IV) family [Escherichia coli B171]
 gi|194423914|gb|EDX39902.1| peptidase, S49 (protease IV) family [Escherichia coli 101-1]
 gi|209911770|dbj|BAG76844.1| putative protease [Escherichia coli SE11]
 gi|218351575|emb|CAU97287.1| putative inner membrane peptidase [Escherichia coli 55989]
 gi|218360592|emb|CAQ98150.1| putative inner membrane peptidase [Escherichia coli IAI1]
 gi|238862494|gb|ACR64492.1| predicted inner membrane peptidase [Escherichia coli BW2952]
 gi|253324775|gb|ACT29377.1| Peptidase S49 domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253973253|gb|ACT38924.1| predicted inner membrane peptidase [Escherichia coli B str. REL606]
 gi|253977467|gb|ACT43137.1| predicted inner membrane peptidase [Escherichia coli BL21(DE3)]
 gi|257753618|dbj|BAI25120.1| predicted inner membrane peptidase [Escherichia coli O26:H11 str.
           11368]
 gi|257758766|dbj|BAI30263.1| predicted inner membrane peptidase [Escherichia coli O103:H2 str.
           12009]
 gi|257764076|dbj|BAI35571.1| predicted inner membrane peptidase [Escherichia coli O111:H- str.
           11128]
 gi|260449598|gb|ACX40020.1| Peptidase S49 domain protein [Escherichia coli DH1]
 gi|281600693|gb|ADA73677.1| putative protease sohB [Shigella flexneri 2002017]
 gi|291324450|gb|EFE63872.1| protease sohB [Escherichia coli B088]
 gi|291434662|gb|EFF07635.1| protease sohB [Escherichia coli B185]
 gi|299881093|gb|EFI89304.1| putative signal peptide peptidase SppA [Escherichia coli MS 196-1]
 gi|300317264|gb|EFJ67048.1| putative signal peptide peptidase SppA [Escherichia coli MS 175-1]
 gi|300413474|gb|EFJ96784.1| putative signal peptide peptidase SppA [Escherichia coli MS 115-1]
 gi|300448861|gb|EFK12481.1| putative signal peptide peptidase SppA [Escherichia coli MS 116-1]
 gi|300464171|gb|EFK27664.1| putative signal peptide peptidase SppA [Escherichia coli MS 187-1]
 gi|300524982|gb|EFK46051.1| putative signal peptide peptidase SppA [Escherichia coli MS 119-7]
 gi|300527298|gb|EFK48360.1| putative signal peptide peptidase SppA [Escherichia coli MS 107-1]
 gi|301074596|gb|EFK89402.1| putative signal peptide peptidase SppA [Escherichia coli MS 146-1]
 gi|306909693|gb|EFN40187.1| Peptidase S49 domain protein [Escherichia coli W]
 gi|309701570|emb|CBJ00877.1| probable protease [Escherichia coli ETEC H10407]
 gi|313649460|gb|EFS13891.1| peptidase family S49 family protein [Shigella flexneri 2a str.
           2457T]
 gi|313848613|emb|CAQ31775.2| predicted inner membrane peptidase [Escherichia coli BL21(DE3)]
 gi|315060522|gb|ADT74849.1| predicted inner membrane peptidase [Escherichia coli W]
 gi|315135908|dbj|BAJ43067.1| putative periplasmic protease [Escherichia coli DH1]
 gi|315619350|gb|EFU99894.1| peptidase family S49 family protein [Escherichia coli 3431]
 gi|320199306|gb|EFW73897.1| putative protease sohB [Escherichia coli EC4100B]
 gi|323153297|gb|EFZ39555.1| peptidase family S49 family protein [Escherichia coli EPECa14]
 gi|323162368|gb|EFZ48223.1| peptidase family S49 family protein [Escherichia coli E128010]
 gi|323168246|gb|EFZ53931.1| peptidase family S49 family protein [Shigella sonnei 53G]
 gi|323172373|gb|EFZ58010.1| peptidase family S49 family protein [Escherichia coli LT-68]
 gi|323179777|gb|EFZ65338.1| peptidase family S49 family protein [Escherichia coli 1180]
 gi|323185570|gb|EFZ70931.1| peptidase family S49 family protein [Escherichia coli 1357]
 gi|323378915|gb|ADX51183.1| Peptidase S49 domain protein [Escherichia coli KO11]
 gi|323937593|gb|EGB33861.1| peptidase S49 [Escherichia coli E1520]
 gi|323942386|gb|EGB38556.1| peptidase S49 [Escherichia coli E482]
 gi|323947448|gb|EGB43452.1| peptidase S49 [Escherichia coli H120]
 gi|323962572|gb|EGB58152.1| peptidase S49 [Escherichia coli H489]
 gi|323973488|gb|EGB68674.1| peptidase S49 [Escherichia coli TA007]
 gi|324018879|gb|EGB88098.1| putative signal peptide peptidase SppA [Escherichia coli MS 117-3]
 gi|331038628|gb|EGI10848.1| putative protease SohB [Escherichia coli H736]
 gi|331065241|gb|EGI37136.1| putative protease SohB [Escherichia coli TA271]
 gi|331070020|gb|EGI41389.1| putative protease SohB [Escherichia coli TA280]
 gi|331075738|gb|EGI47036.1| putative protease SohB [Escherichia coli H591]
 gi|332342864|gb|AEE56198.1| conserved hypothetical protein [Escherichia coli UMNK88]
 gi|332757924|gb|EGJ88251.1| peptidase family S49 family protein [Shigella flexneri 4343-70]
 gi|332759393|gb|EGJ89701.1| peptidase family S49 family protein [Shigella flexneri 2747-71]
 gi|332760366|gb|EGJ90656.1| peptidase family S49 family protein [Shigella flexneri K-671]
 gi|333005723|gb|EGK25241.1| peptidase family S49 family protein [Shigella flexneri K-218]
 gi|333007608|gb|EGK27086.1| peptidase family S49 family protein [Shigella flexneri K-272]
 gi|333019108|gb|EGK38398.1| peptidase family S49 family protein [Shigella flexneri K-304]
 gi|333019542|gb|EGK38822.1| peptidase family S49 family protein [Shigella flexneri K-227]
          Length = 349

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 93  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349


>gi|332767506|gb|EGJ97700.1| peptidase S49 family protein [Shigella flexneri 2930-71]
          Length = 339

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 83  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 142

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 143 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 202

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 203 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 260

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 261 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 314

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 315 FTGSAAESADRLLLRWWQRGQKPLM 339


>gi|296446060|ref|ZP_06888009.1| peptidase S49 [Methylosinus trichosporium OB3b]
 gi|296256419|gb|EFH03497.1| peptidase S49 [Methylosinus trichosporium OB3b]
          Length = 439

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 97/214 (45%), Gaps = 14/214 (6%)

Query: 35  SPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
              +A + + G++                +     +   + D     +I+ +++PGG   
Sbjct: 69  EDGIALVNVFGELVTRGAWLNAWSGLTSYEGFEAIMRAAAVDSRVRGIILDMNTPGGQGA 128

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                 + ++ + +RKPV+  V+  AASAGY I+  +  I++  +  VGSIGV++ +   
Sbjct: 129 GAMEAGKLVRAIADRKPVVAFVNAQAASAGYAIASGATRIISIPSGSVGSIGVVWMHVDR 188

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
               +K G  +  +     KA+  PF+ ++  A   +Q  +   Y  FVR V++ R++P 
Sbjct: 189 SAEHEKAGRKVTVLTEGAYKADGHPFAALDDGARGRIQSQMRELYDDFVRTVADHRDLPE 248

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
                 +  R++ G  A + GL D VG  ++ + 
Sbjct: 249 RAVRD-TQARVYRGDRAVENGLADAVGTLDDAFA 281


>gi|300904131|ref|ZP_07122004.1| putative signal peptide peptidase SppA [Escherichia coli MS 84-1]
 gi|301304778|ref|ZP_07210884.1| putative signal peptide peptidase SppA [Escherichia coli MS 124-1]
 gi|300403896|gb|EFJ87434.1| putative signal peptide peptidase SppA [Escherichia coli MS 84-1]
 gi|300839899|gb|EFK67659.1| putative signal peptide peptidase SppA [Escherichia coli MS 124-1]
 gi|315252503|gb|EFU32471.1| putative signal peptide peptidase SppA [Escherichia coli MS 85-1]
          Length = 349

 Score = 89.7 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 93  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349


>gi|293390340|ref|ZP_06634674.1| S49 family peptidase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950874|gb|EFE00993.1| S49 family peptidase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 352

 Score = 89.7 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 113/264 (42%), Gaps = 17/264 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80
             +  E+  P +  +  +G I  S+      E+   I+          ++V L SPGG  
Sbjct: 95  GENPAEERKPTLYVLHFKGDISASETAALREEISAIIQVA---KPTDEVLVCLESPGGVV 151

Query: 81  YAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +        + ++K R   +T  V ++AAS GY+++C ++ IV+A  +++GSIGV+ Q P
Sbjct: 152 HGYGLAASQLMRLKQRNIRLTVAVDKVAASGGYMMACVADKIVSAPFAIIGSIGVVAQIP 211

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            V   L K  V +  + +   K   + F E   K  Q  Q  ++ ++  F R V+++R  
Sbjct: 212 NVHRLLKKHDVDVDVMTAGEYKRTMTIFGENTEKGKQKFQQELEETHQLFKRFVAQNR-- 269

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           P+     ++ G  W G +A  + L+D +   +++            ++        K   
Sbjct: 270 PHLDLDKVATGEHWFGQQALNLNLVDEIMTSDDLLLQAMKEKSVIGVKYAV-----KKSL 324

Query: 260 FCDLKNLSISSLLEDTIPLMKQTK 283
              +   +  S     +  +K+ +
Sbjct: 325 LQKVGKQAEESADNIALRWLKKNE 348


>gi|229220628|ref|NP_718503.2| putative periplasmic protease [Shewanella oneidensis MR-1]
          Length = 338

 Score = 89.7 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 111/244 (45%), Gaps = 10/244 (4%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEAI 86
              ++   V  +  +G I+ ++   L E I  I    +    ++V++ S GG  +     
Sbjct: 86  DEGESKGKVFVVDFKGSIDAAEVASLREEISAILTIAEKGDEVVVNVESGGGMVHGYGLA 145

Query: 87  FRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
              + ++ +   P+   V ++AAS GY+++C +N + AA  ++VGSIGV+ Q P     L
Sbjct: 146 SSQLDRLRQADIPLTVCVDKVAASGGYMMACVANKVYAAPFAIVGSIGVVAQLPNFNRLL 205

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K  +  +   +   K   + F E   +  Q  Q  ++ ++  F   VS+ R  P     
Sbjct: 206 KKHEIDYEQHTAGDFKRTLTVFGENTDEGRQKFQQELEETHVLFKAFVSKYR--PQLDLA 263

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            ++ G  W G +A ++GLID +   ++V   L  L  ++++ K++ +   K         
Sbjct: 264 KVATGEHWYGQQAIELGLIDAISTSDDV---LMHLAGERTVYKLR-YQVRKKLADKIAHG 319

Query: 266 LSIS 269
            S+S
Sbjct: 320 ASLS 323


>gi|169795179|ref|YP_001712972.1| putative periplasmic protease [Acinetobacter baumannii AYE]
 gi|213158157|ref|YP_002320208.1| peptidase S49 [Acinetobacter baumannii AB0057]
 gi|215482727|ref|YP_002324925.1| Peptidase family S49 family protein [Acinetobacter baumannii
           AB307-0294]
 gi|301348388|ref|ZP_07229129.1| putative periplasmic protease [Acinetobacter baumannii AB056]
 gi|301512513|ref|ZP_07237750.1| putative periplasmic protease [Acinetobacter baumannii AB058]
 gi|301596256|ref|ZP_07241264.1| putative periplasmic protease [Acinetobacter baumannii AB059]
 gi|332857060|ref|ZP_08436366.1| putative signal peptide peptidase SppA [Acinetobacter baumannii
           6013150]
 gi|332869998|ref|ZP_08438974.1| putative signal peptide peptidase SppA [Acinetobacter baumannii
           6013113]
 gi|169148106|emb|CAM85969.1| putative protease (SohB) [Acinetobacter baumannii AYE]
 gi|213057317|gb|ACJ42219.1| peptidase S49 [Acinetobacter baumannii AB0057]
 gi|213988882|gb|ACJ59181.1| Peptidase family S49 family protein [Acinetobacter baumannii
           AB307-0294]
 gi|332726875|gb|EGJ58389.1| putative signal peptide peptidase SppA [Acinetobacter baumannii
           6013150]
 gi|332732498|gb|EGJ63749.1| putative signal peptide peptidase SppA [Acinetobacter baumannii
           6013113]
          Length = 320

 Score = 89.7 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 108/260 (41%), Gaps = 13/260 (5%)

Query: 33  DNSPHVARIAIRGQIEDS--QELIERIERISRDDSA--TALIVSLSSPGGSAYAGEAIFR 88
            N+  +  +  +G I+ S  + L E I  I     A    ++V L SPGG  +       
Sbjct: 54  KNNQKIFVLDFKGDIQASAVENLREEITLILATAKAGRDRVVVRLESPGGMVHGYGLAAA 113

Query: 89  AIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            + ++++    +   V ++AAS GY+++C +N I++A  ++VGSIGV+ Q P     L +
Sbjct: 114 QLVRLRDAGFHLTICVDKVAASGGYMMACIANEIISAPFAVVGSIGVVAQVPNFNRLLKE 173

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
             V  +   +   K   + F E  P+     ++ +  ++  F   V + R  P      +
Sbjct: 174 HNVDFELYTAGQYKRTVTMFGENTPEGKAKFEEELQQTHVLFKHFVEKYR--PQLNVDKV 231

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G  W G +A  + L+D +   +E   +L           +   N  K     +   L 
Sbjct: 232 ATGEHWYGQDALDLNLVDKLQTSDEYLLALL------PQHDVYVINTRKKATLGEKLGLQ 285

Query: 268 ISSLLEDTIPLMKQTKVQGL 287
            + + +  IP +       L
Sbjct: 286 AAQMTDSLIPAVMNKVADTL 305


>gi|15597029|ref|NP_250523.1| periplasmic protease [Pseudomonas aeruginosa PAO1]
 gi|107101264|ref|ZP_01365182.1| hypothetical protein PaerPA_01002297 [Pseudomonas aeruginosa PACS2]
 gi|116049782|ref|YP_791411.1| putative periplasmic protease [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218892214|ref|YP_002441081.1| putative periplasmic protease [Pseudomonas aeruginosa LESB58]
 gi|254234926|ref|ZP_04928249.1| hypothetical protein PACG_00801 [Pseudomonas aeruginosa C3719]
 gi|296389777|ref|ZP_06879252.1| putative periplasmic protease [Pseudomonas aeruginosa PAb1]
 gi|313110530|ref|ZP_07796415.1| putative protease [Pseudomonas aeruginosa 39016]
 gi|9947818|gb|AAG05221.1|AE004609_8 probable protease [Pseudomonas aeruginosa PAO1]
 gi|115585003|gb|ABJ11018.1| putative protease [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126166857|gb|EAZ52368.1| hypothetical protein PACG_00801 [Pseudomonas aeruginosa C3719]
 gi|218772440|emb|CAW28222.1| probable protease [Pseudomonas aeruginosa LESB58]
 gi|310882917|gb|EFQ41511.1| putative protease [Pseudomonas aeruginosa 39016]
          Length = 341

 Score = 89.7 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 107/256 (41%), Gaps = 18/256 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAY 81
           +    +    V  +   G I+ S       E+   +    +DD    +++ L S GG  +
Sbjct: 83  AKKHPEQKSRVYVLDFDGDIKASATEQLRHEVTAVLSMAGKDDE---VVLRLESGGGMVH 139

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + +++     +T    ++AAS GY+++C  + I++A  +++GSIGV+ Q P 
Sbjct: 140 GYGLAASQLARIRQAGVPLTVCVDKVAASGGYMMACIGDRILSAPFAILGSIGVVAQLPN 199

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           V   L K  +  + + +   K   + F E   K  +  Q+ ++ ++  F   V+  R  P
Sbjct: 200 VHRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLEVTHELFKNFVAHYR--P 257

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G +W G  A    L+D +   +E    L     ++ + +++          
Sbjct: 258 QLNMDEIATGEVWLGQAALGKLLVDELKTSDE---YLAEQARERDVYQVQFVERKS---L 311

Query: 261 CDLKNLSISSLLEDTI 276
            +   L+ S +++  +
Sbjct: 312 QERVGLAASVVIDRVL 327


>gi|83310271|ref|YP_420535.1| periplasmic serine protease [Magnetospirillum magneticum AMB-1]
 gi|82945112|dbj|BAE49976.1| Periplasmic serine protease [Magnetospirillum magneticum AMB-1]
          Length = 404

 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 103/273 (37%), Gaps = 16/273 (5%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQELIERI-------------ERISRDDSATALIVS 72
           + S+ +      +A + + G +      +                E  + D    A+++ 
Sbjct: 46  APSAEMAVTPDGIAIVPVIGTLVARSGYLGAASGLTAYSDIADAIEAAATDPGVRAILLD 105

Query: 73  LSSPGGSAYAGEAIFRAIQ--KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + S GG       +   IQ  + +  KP+     E A SA Y I+C ++ +   +T  +G
Sbjct: 106 VDSSGGEVGGLFDLVDHIQAIRAQCGKPIWAIADEAALSAAYAIACTADRLYLTQTGEIG 165

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+  +        + G +   + +   K + +P   ++  A   +Q  VD+ Y  F 
Sbjct: 166 SIGVVAIHVDESAADAQAGRAWSFIHAGASKVDGNPHQPLSDSARATLQADVDALYGKFT 225

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
            LV+E R +  D     ++  ++ G +A   GL D VG        L       S+R   
Sbjct: 226 ALVAERRRLSPDAIRA-TEAAVYRGDQAVAAGLADKVGTLRVALADLGTSLARPSVRSPV 284

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
              P +        ++ + + +   +    + +
Sbjct: 285 LSKPKETTMSEQTGDIPVLAAVPSAVEATAEIE 317


>gi|330722505|gb|EGH00330.1| putative protease sohB [gamma proteobacterium IMCC2047]
          Length = 356

 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 108/247 (43%), Gaps = 15/247 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80
            ++   D+   +  +   G I+ S+      E+   +  I+ D     ++++LSS GG  
Sbjct: 96  STTDDLDSKKRIYVLDFDGDIKASEVDSLREEITSVLSVINADRD--EVVLTLSSGGGMV 153

Query: 81  YAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +A       ++++K++   +T    ++AAS GY+++C ++ ++AA  +++GSIGV+ Q P
Sbjct: 154 HAYGLASSQVKRIKDKGVALTVCVDKVAASGGYMMACVADKLLAAPFAVLGSIGVVAQLP 213

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                L K  +  +++ +   K   + F E   K  +   + ++ ++  F   V E+R  
Sbjct: 214 NFHRLLKKHDIDYETLTAGEYKRTLTMFGENTDKGREKFTEDLEDTHELFKEFVKENR-- 271

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           P      ++ G +W G  A +  L+D +   +E                +  +   K+  
Sbjct: 272 PQLDIDAIATGEVWFGQRALEKNLVDELKTSDEYLVDSCKDA----DVYLVSYEYKKSLQ 327

Query: 260 FCDLKNL 266
                 +
Sbjct: 328 DRFSMGM 334


>gi|227111423|ref|ZP_03825079.1| putative periplasmic protease [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 348

 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 102/247 (41%), Gaps = 12/247 (4%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATA-LIVSLSSPGGSAYA 82
           +     +   P +  +   G ++  +   L E I  +         +++ L SPGG  + 
Sbjct: 90  AKRGEEKSVKPCLYVLDFNGSMDAGEVSSLREEISAVLAVAKPKDEVLLRLESPGGVVHG 149

Query: 83  GEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  +Q+++         V ++AAS GY+++C ++ IVAA  ++VGSIGV+ Q P  
Sbjct: 150 YGLAASQLQRLRQGGVRLTVSVDKVAASGGYMMACVADRIVAAPFAIVGSIGVVAQIPNF 209

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L    + ++   +   K   + F E   +  +  ++ ++ ++  F   V + R  P 
Sbjct: 210 HRLLKNKDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNVTHTLFKDFVQQMR--PS 267

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE-VWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                ++ G  W G +AK +GLID +G  ++ +   + +  V         +   K    
Sbjct: 268 LDIDSVATGEHWFGTQAKDLGLIDAIGTSDDLLIAEMASHEVLS-----VRYTRRKRLLD 322

Query: 261 CDLKNLS 267
               +  
Sbjct: 323 RLTGSAG 329


>gi|170768111|ref|ZP_02902564.1| peptidase, S49 family [Escherichia albertii TW07627]
 gi|170122877|gb|EDS91808.1| peptidase, S49 family [Escherichia albertii TW07627]
          Length = 349

 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 113/261 (43%), Gaps = 12/261 (4%)

Query: 32  EDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGEAIFR 88
            +  P V  +  +G ++  +   L E I   ++       +++ L SPGG  +       
Sbjct: 97  TEGKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGVVHGYGLAAS 156

Query: 89  AIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            +Q+++++K  +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    FL  
Sbjct: 157 QLQRLRDKKIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKN 216

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
             + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P      +
Sbjct: 217 KDIDIELHTAGQYKRTLTFLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLDIEQV 274

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G  W G +A + GL+D +   ++V  +L         R++ +    +     D    S
Sbjct: 275 ATGEHWYGQQAVEKGLVDEINTSDDVILNLME------GREVVNVRYMQRKRLIDRFTGS 328

Query: 268 ISSLLEDTIPLMKQTKVQGLW 288
            +   +  +    Q   + L 
Sbjct: 329 AAESADRLLLRWWQRGQKPLM 349


>gi|291281130|ref|YP_003497948.1| Head-tail preconnector protein GP5 [Escherichia coli O55:H7 str.
           CB9615]
 gi|290761003|gb|ADD54964.1| Head-tail preconnector protein GP5 [Escherichia coli O55:H7 str.
           CB9615]
          Length = 501

 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADIIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQGGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|300935368|ref|ZP_07150367.1| putative signal peptide peptidase SppA [Escherichia coli MS 21-1]
 gi|300459398|gb|EFK22891.1| putative signal peptide peptidase SppA [Escherichia coli MS 21-1]
          Length = 349

 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 93  GEMATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349


>gi|306820326|ref|ZP_07453965.1| signal peptide peptidase SppA [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551655|gb|EFM39607.1| signal peptide peptidase SppA [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 294

 Score = 89.3 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 89/228 (39%), Gaps = 27/228 (11%)

Query: 30  HVEDNSPHVARIAIRGQIED---SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
              D+   +A + + G ++       + + +  I        +I+ + SP G  Y    I
Sbjct: 61  KAGDSDSKIATVTLDGTLDSFVKQDYITKSLNNIMNTPEVKGVIIRIDSPKGGIYDSVEI 120

Query: 87  FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
              I+  K  K  PV   +    ++ GY ++ + + + A E +++               
Sbjct: 121 SEMIKAFKTDKKVPVYAVIGSATSAGGYCVAISCDKVYAKENTII--------------- 165

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
                 +   +         S    +N      ++ +++++Y  FV  V ES+ I   + 
Sbjct: 166 ------NYTKLFEKNETELGSTDRALNVDGRSSLRSILENAYEKFVSTVMESKGIDEARV 219

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
             L+DGRI+ G +A +  L+D VGG  +   ++ +     +  +I  +
Sbjct: 220 RTLTDGRIYNGTQAHENQLVDEVGGFNDAVNAMKSQFGLSN-PEIISY 266


>gi|320659114|gb|EFX26713.1| Head-tail preconnector protein GP5 (Contains: Scaffold protein GP6
           (Head protein GP6)) [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 501

 Score = 89.3 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADIIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQGGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                ++  ++ G    + GL D +    +    + 
Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290


>gi|219871521|ref|YP_002475896.1| putative periplasmic protease [Haemophilus parasuis SH0165]
 gi|219691725|gb|ACL32948.1| putative periplasmic protease, secreted serine protease
           [Haemophilus parasuis SH0165]
          Length = 351

 Score = 89.3 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 108/257 (42%), Gaps = 17/257 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSA 80
              + E     +  +  +G I+ S   +  + +               +++ L SPGG  
Sbjct: 93  GEENPEAEKSRLFVLNFQGDIQASG--VSALRKEVDAVLALAKPEKDQVLLKLESPGGVV 150

Query: 81  YAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +        +Q++K++   +T  V ++AAS GY+++C +N IV+A  +++GS+GV+ Q P
Sbjct: 151 HGYGLAASQLQRLKDKSIPLTVAVDKVAASGGYMMACVANKIVSAPFAVIGSVGVVAQVP 210

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            +   L K  + +  + +   K   +   E   K  Q  Q  ++ ++  F + V++ R  
Sbjct: 211 NIHRLLKKHDIDVDVMTAGEYKRTVTLVGENTEKGKQKFQQELEETHRLFKQFVAQHR-- 268

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           P      ++ G  W G +A +  L+D +   +++             + + +    +   
Sbjct: 269 PQLDIEKIATGEHWFGQQAVEFNLVDELSTSDDLILDAVK------SQDVIEVKYQQKKK 322

Query: 260 FCDLKNLSISSLLEDTI 276
                   I S +E+ +
Sbjct: 323 LSQRVGEQIESSVENVV 339


>gi|332288220|ref|YP_004419072.1| putative periplasmic protease [Gallibacterium anatis UMN179]
 gi|330431116|gb|AEC16175.1| putative periplasmic protease [Gallibacterium anatis UMN179]
          Length = 361

 Score = 89.3 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 11/233 (4%)

Query: 35  SPHVARIAIRGQIEDSQ--ELIERIER--ISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            P V  I  +G I+ +    L E I             +++ L SPGG  +        +
Sbjct: 111 KPCVYVIDFKGDIQANATNSLREEINAVLAVARPEKDEVLLRLESPGGVVHGYGFAASQL 170

Query: 91  QKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           Q+++N+       V ++AAS GY+++C ++ IVAA  +++GSIGV+ Q P +   L K  
Sbjct: 171 QRLRNKHIPLTIAVDKVAASGGYMMACVADKIVAAPFAIIGSIGVVAQVPNIHRLLKKHD 230

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           V ++ + +   K   +   E   K  Q  Q  +  ++  F + V++ R  P  +   ++ 
Sbjct: 231 VDVEVMTAGEYKRTVTVLGENTEKGKQKFQQELQETHDLFKQFVAQHR--PQVEIDKVAT 288

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           G  W G +A  + LID V   +++  +       +       ++  K+     
Sbjct: 289 GEHWFGQQALDLALIDEVKTSDDLILAAIE----EKDVLAIKYSTKKSLVQKL 337


>gi|325122976|gb|ADY82499.1| putative protease (SohB) [Acinetobacter calcoaceticus PHEA-2]
          Length = 318

 Score = 89.3 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 110/260 (42%), Gaps = 13/260 (5%)

Query: 33  DNSPHVARIAIRGQIEDS--QELIERIERISRDDSA--TALIVSLSSPGGSAYAGEAIFR 88
            N+  +  +  +G I+ S  + L E I  I     A    ++V L SPGG  +       
Sbjct: 54  KNNQKIFVLDFKGDIQASAVENLREEITLILATAKAGRDRIVVRLESPGGMVHGYGLAAA 113

Query: 89  AIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            + ++++    +   V ++AAS GY+++C +N I+AA  ++VGSIGV+ Q P     L +
Sbjct: 114 QLVRLRDAGFHLTICVDKVAASGGYMMACIANEIIAAPFAIVGSIGVVAQVPNFNRLLKE 173

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
             V  +   +   K   + F E  P+     ++ +  ++  F   V + R  P      +
Sbjct: 174 HNVDFELYTAGQYKRTVTMFGENTPEGKAKFEEELQQTHVLFKHFVEKYR--PQLNVDKV 231

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G  W G +A  + L+D +   +E   +L           +   N  K     +   L 
Sbjct: 232 ATGEHWYGEDALDLNLVDKLQTSDEYLLALL------PQHDVYVINTRKKATLGEKLGLQ 285

Query: 268 ISSLLEDTIPLMKQTKVQGL 287
            + + +  IP +    ++ L
Sbjct: 286 AAQMADSLIPTVIGKVMESL 305


>gi|238785808|ref|ZP_04629779.1| protease sohB [Yersinia bercovieri ATCC 43970]
 gi|238713300|gb|EEQ05341.1| protease sohB [Yersinia bercovieri ATCC 43970]
          Length = 284

 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 118/270 (43%), Gaps = 18/270 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGS 79
           + +  V    P +  I  +G I+        +E+   +   +  D    +++ L SPGG 
Sbjct: 26  AKAGAVAAIKPCLYVIDFKGSIDAHEVTSLREEISAVLAVATAQDE---VLLRLESPGGV 82

Query: 80  AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +        +++++++   +T  V ++AAS GY+++C ++ I++A  +++GSIGV+ Q 
Sbjct: 83  VHGYGLAASQLERLRHKGIRLTVAVDKVAASGGYMMACVADRIISAPFAIIGSIGVVAQI 142

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P     L K  + ++   +   K   + F E   +  +  ++ ++ ++  F + V + R 
Sbjct: 143 PNFHRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVQQQR- 201

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P      ++ G  W G +AK+ GL+D +G  +++   +  +       ++      +  
Sbjct: 202 -PSLDIDAVATGEHWFGTQAKEKGLVDAIGTSDDLL--IAEM----DNHEVIGVRYARRK 254

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
              D    S +   +  +    Q   + L 
Sbjct: 255 RLMDRFTGSAAESADRLLLRWWQRGEKPLL 284


>gi|311234315|gb|ADP87169.1| peptidase S49 [Desulfovibrio vulgaris RCH1]
          Length = 425

 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 103/257 (40%), Gaps = 11/257 (4%)

Query: 38  VARIAIRGQIE--------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
           VA + +RG +           + +   +++   D +  A+++++ SPGG+      +   
Sbjct: 70  VAVVNMRGTLTKRGSWWTTGMEGVRTTVQQALDDPAVRAVLLAIDSPGGTVDGTRELADW 129

Query: 90  I--QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
           I  +     KP+ +       SA Y I  ++  + A   ++VGS+GVL+ +     +L+ 
Sbjct: 130 IAARVADGVKPIASYADGTMCSAAYWIGGSTGRVFAPAAAIVGSVGVLWMHYDWSQYLET 189

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
            G+    + +   KA  +P + ++       Q ++D++Y  F+  VS    +        
Sbjct: 190 NGIRATYITAGSRKAAGAPEAPLSDNDKAYFQHLIDTAYTQFLDGVSAPMGLDRANPAAW 249

Query: 208 SDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           +DG+++   EA  +GL+  +         +L       +      +         + +  
Sbjct: 250 ADGQVFRATEALALGLVTAIVPDLAGAVAALSQEVHMDAKELAAKYPEAVAAIRNEAEEN 309

Query: 267 SISSLLEDTIPLMKQTK 283
           + ++  ++T    +   
Sbjct: 310 ARTAASKETAQAAQSVS 326


>gi|71065760|ref|YP_264487.1| putative periplasmic protease [Psychrobacter arcticus 273-4]
 gi|71038745|gb|AAZ19053.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Psychrobacter
           arcticus 273-4]
          Length = 324

 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 103/261 (39%), Gaps = 12/261 (4%)

Query: 37  HVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            +  +   G I+ +      +E+   I   ++ D    ++V L S GG  +        +
Sbjct: 67  QIFVLDFDGDIKATAVKHLREEISTLISTANKGDE---VVVRLESGGGVVHGYGLAAAQL 123

Query: 91  QKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
            ++K+    +T    ++AAS GY+++C ++ IVAA  +++GSIGV+ Q P    +L    
Sbjct: 124 ARLKDAGLKLTVCVDKVAASGGYMMACVADNIVAAPFAIIGSIGVVSQLPNFHKWLKNHD 183

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           V  +   +   K   + F E + K     Q+ ++ ++  F   V+  R +       ++ 
Sbjct: 184 VDYEMFTAGDYKRTVTVFGENDDKDRAKYQEELEQTHELFKHFVNRYRGML--DVDKVAT 241

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           G  W G +A  + L+D +   +             ++   +     +          ++S
Sbjct: 242 GEHWYGEDALHLNLVDKLQTSDSYLLERMENSEVYALHSRQKPTLAEKLGLSQAAEATLS 301

Query: 270 SLLEDTIPLMKQTKVQGLWAV 290
             ++     + +        +
Sbjct: 302 MAIDKLPDALARFDFNSRLNI 322


>gi|110805274|ref|YP_688794.1| putative periplasmic protease [Shigella flexneri 5 str. 8401]
 gi|110614822|gb|ABF03489.1| putative protease [Shigella flexneri 5 str. 8401]
          Length = 296

 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 40  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 99

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 100 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 159

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 160 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 217

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 218 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 271

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 272 FTGSAAESADRLLLRWWQRGQKPLM 296


>gi|331682759|ref|ZP_08383378.1| putative protease SohB [Escherichia coli H299]
 gi|331080390|gb|EGI51569.1| putative protease SohB [Escherichia coli H299]
          Length = 349

 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 93  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLN 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 271 IDQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349


>gi|254282105|ref|ZP_04957073.1| putative protease SohB [gamma proteobacterium NOR51-B]
 gi|219678308|gb|EED34657.1| putative protease SohB [gamma proteobacterium NOR51-B]
          Length = 347

 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 113/265 (42%), Gaps = 18/265 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81
            S  +   P +  +   G +  +      +EL   +    ++D    ++V L SPGG  +
Sbjct: 90  KSAEDARRPRLFVLNFDGDLRAAQVEQLREELSAILPEARKEDE---VLVRLESPGGMVH 146

Query: 82  AGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           +       +++V     P+   V ++AAS GY+++C ++ I+AA  +++GSIGV+ Q P 
Sbjct: 147 SYGLAASQLRRVVDAEIPLTVAVDKVAASGGYMMACVADKIIAAPFAVIGSIGVIAQLPN 206

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E   K  Q   + ++ ++  F + V+E+R   
Sbjct: 207 FHKVLKKNDIDFELLTAGEYKRTLTMFGENTDKGRQKFLEELEDTHALFKQFVAENRKQV 266

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G +W G  A  V L+D +   +E  Q           R I +        +
Sbjct: 267 --AIEQVATGEVWFGQRALDVQLVDQLCTSDEYLQK------QLDERDIIEVRYVGKRHW 318

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQ 285
            +   L+  S +E  +  + Q   Q
Sbjct: 319 QEKLGLAAESAIERALLKVWQQATQ 343


>gi|119775254|ref|YP_927994.1| putative periplasmic protease [Shewanella amazonensis SB2B]
 gi|119767754|gb|ABM00325.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Shewanella
           amazonensis SB2B]
          Length = 337

 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 103/247 (41%), Gaps = 14/247 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
           +   +   P    +  +G I        +E I  I  I+       +++++ S GG  + 
Sbjct: 82  AEKQDKPKPRTFVLDFKGSIDAHEVASLREEISAILTIAE--KGDEVLLNVESGGGMVHG 139

Query: 83  GEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + ++ +   P+   + ++AAS GY+++C +N I AA  ++VGSIGV+ Q P  
Sbjct: 140 YGLAASQLDRLRQADIPLTACIDKVAASGGYMMACVANRIYAAPFAIVGSIGVVAQLPNF 199

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  +  +   +   K   + F E   +  Q  ++ ++ ++  F   VS+ R  P 
Sbjct: 200 NRLLKKHDIDYEQHTAGDFKRTLTLFGENTEEGRQKFREELEETHQLFKAFVSKYR--PE 257

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +A  +GL+D +   +++  +         +     + P K     
Sbjct: 258 LDLDKVATGEHWYGQQALDLGLVDSISTSDDLMLTAAKDRTLIKL----RYQPRKKLADK 313

Query: 262 DLKNLSI 268
              + ++
Sbjct: 314 LAHSAAL 320


>gi|323186632|gb|EFZ71964.1| head-tail preconnector protein GP5 [Escherichia coli 1357]
          Length = 501

 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 89/217 (41%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADTQVRGVLLDIDSPGGQATG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++  KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQLKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMGHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + +   K + + F  +  K  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYAGSHKVDGNQFESLPAKVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +  ++  ++ G    + GL D +    +    + A
Sbjct: 256 AVMG-TEAAVFEGQSGIEAGLADELINASDAISVMAA 291


>gi|157374833|ref|YP_001473433.1| putative periplasmic protease [Shewanella sediminis HAW-EB3]
 gi|157317207|gb|ABV36305.1| peptidase S49, N-terminal domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 343

 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 105/247 (42%), Gaps = 16/247 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAG 83
             E   P V  +  +G I+ S+      E+   I      D    +IV++ S GG  +  
Sbjct: 90  KEEVIEPRVFVVDFKGSIDASEVASLREEISAIIAIAESGDE---VIVNVESGGGMVHGY 146

Query: 84  EAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                 + +++  K P+   V ++AAS GY+++C +N I AA  ++VGSIGV+ Q P   
Sbjct: 147 GLASSQLDRLRQAKLPLTICVDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQVPNFN 206

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             + K  +  +   +   K   + F E   +     Q+ ++ ++  F   +++ R  P  
Sbjct: 207 RLMKKHDIDYEQHTAGDFKRTLTLFGENTDEGRAKFQEELEETHKLFKSFIAQYR--PEL 264

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               ++ G  W G +A  +GLID +   ++V   L      +       +   KN+    
Sbjct: 265 DLGKVATGEHWYGQQAIDLGLIDEIATSDDVVMKLA----LERTVIKVRYQLKKNFADKI 320

Query: 263 LKNLSIS 269
               S+S
Sbjct: 321 AHGASLS 327


>gi|239501142|ref|ZP_04660452.1| putative periplasmic protease [Acinetobacter baumannii AB900]
          Length = 320

 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 108/260 (41%), Gaps = 13/260 (5%)

Query: 33  DNSPHVARIAIRGQIEDS--QELIERIERISRDDSA--TALIVSLSSPGGSAYAGEAIFR 88
            N+  +  +  +G I+ S  + L E I  I     A    ++V L SPGG  +       
Sbjct: 54  KNNQKIFVLDFKGDIQASAVENLREEITLILATAKAGRDRIVVRLESPGGMVHGYGLAAA 113

Query: 89  AIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            + ++++    +   V ++AAS GY+++C +N I++A  ++VGSIGV+ Q P     L +
Sbjct: 114 QLVRLRDAGFHLTICVDKVAASGGYMMACIANEIISAPFAVVGSIGVVAQVPNFNRLLKE 173

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
             V  +   +   K   + F E  P+     ++ +  ++  F   V + R  P      +
Sbjct: 174 HNVDFELYTAGQYKRTVTMFGENTPEGKAKFEEELQQTHVLFKHFVEKYR--PQLNVDKV 231

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G  W G +A  + L+D +   +E   +L           +   N  K     +   L 
Sbjct: 232 ATGEHWYGQDALDLNLVDKLQTSDEYLLALL------PQHDVYVINTRKKATLGEKLGLQ 285

Query: 268 ISSLLEDTIPLMKQTKVQGL 287
            + + +  IP +       L
Sbjct: 286 AAQMADSLIPAVMNKVADTL 305


>gi|289208920|ref|YP_003460986.1| peptidase S49 [Thioalkalivibrio sp. K90mix]
 gi|288944551|gb|ADC72250.1| peptidase S49 [Thioalkalivibrio sp. K90mix]
          Length = 356

 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 17/259 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSA 80
               V+   P V  +   G I  S      +E+   +           +IV L SPGG  
Sbjct: 101 ADESVDKERPRVYVLRFTGDIRASSVDSLREEITAILTLAR--PEQDRVIVCLESPGGLV 158

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYP 139
            +       + +++ +   +T   +  A++G  +  A  + IVAA  +++GSIGV+ Q P
Sbjct: 159 PSYGLAASQLARLREKGLDLTVAVDRVAASGGYMMAAVADRIVAAPFAVLGSIGVVAQIP 218

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            +  +L++  + ++ + +   K   +   E   +  +  ++ +D ++  F   +S  R  
Sbjct: 219 NLHRWLERHDIDVELLTAGEYKRTLTVLGENTDEGRRKFREQLDEAHDQFKTFLSRYR-- 276

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           P      ++ G  W G +A ++GL D +   +++   L     +  + +I    P +   
Sbjct: 277 PSLDLEKVATGEHWYGEQAHQLGLADELRTSDDL---LLETSREADLFEITYTRPQR--- 330

Query: 260 FCDLKNLSISSLLEDTIPL 278
                 L++ S++E  +  
Sbjct: 331 LSRRITLAMESIVERVLRS 349


>gi|169632872|ref|YP_001706608.1| putative periplasmic protease [Acinetobacter baumannii SDF]
 gi|184158970|ref|YP_001847309.1| putative periplasmic protease [Acinetobacter baumannii ACICU]
 gi|260556659|ref|ZP_05828877.1| signal peptide peptidase SppA, 36K type [Acinetobacter baumannii
           ATCC 19606]
 gi|332874751|ref|ZP_08442621.1| putative signal peptide peptidase SppA [Acinetobacter baumannii
           6014059]
 gi|169151664|emb|CAP00454.1| putative protease (SohB) [Acinetobacter baumannii]
 gi|183210564|gb|ACC57962.1| Periplasmic serine protease (ClpP class) [Acinetobacter baumannii
           ACICU]
 gi|193077950|gb|ABO12862.2| putative protease (SohB) [Acinetobacter baumannii ATCC 17978]
 gi|260409918|gb|EEX03218.1| signal peptide peptidase SppA, 36K type [Acinetobacter baumannii
           ATCC 19606]
 gi|322508952|gb|ADX04406.1| SohB [Acinetobacter baumannii 1656-2]
 gi|323518938|gb|ADX93319.1| putative periplasmic protease [Acinetobacter baumannii TCDC-AB0715]
 gi|332737012|gb|EGJ67969.1| putative signal peptide peptidase SppA [Acinetobacter baumannii
           6014059]
          Length = 320

 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 108/260 (41%), Gaps = 13/260 (5%)

Query: 33  DNSPHVARIAIRGQIEDS--QELIERIERISRDDSA--TALIVSLSSPGGSAYAGEAIFR 88
            N+  +  +  +G I+ S  + L E I  I     A    ++V L SPGG  +       
Sbjct: 54  KNNQKIFVLDFKGDIQASAVENLREEITLILATAKAGRDRVVVRLESPGGMVHGYGLAAA 113

Query: 89  AIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            + ++++    +   V ++AAS GY+++C +N I++A  ++VGSIGV+ Q P     L +
Sbjct: 114 QLVRLRDAGFHLTICVDKVAASGGYMMACIANEIISAPFAVVGSIGVVAQVPNFNRLLKE 173

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
             V  +   +   K   + F E  P+     ++ +  ++  F   V + R  P      +
Sbjct: 174 HNVDFELYTAGQYKRTVTMFGENTPEGKAKFEEELQQTHVLFKHFVEKYR--PQLNVDKV 231

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G  W G +A  + L+D +   +E   +L           +   N  K     +   L 
Sbjct: 232 ATGEHWYGQDALDLNLVDKLQTSDEYLLALL------PQHDVYVINTRKKATLGEKLGLQ 285

Query: 268 ISSLLEDTIPLMKQTKVQGL 287
            + + +  IP +       L
Sbjct: 286 AAQMADSLIPAVMNKVADTL 305


>gi|301019499|ref|ZP_07183668.1| putative signal peptide peptidase SppA [Escherichia coli MS 69-1]
 gi|300399240|gb|EFJ82778.1| putative signal peptide peptidase SppA [Escherichia coli MS 69-1]
          Length = 349

 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 93  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLN 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 271 IDQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349


>gi|218699982|ref|YP_002407611.1| putative periplasmic protease [Escherichia coli IAI39]
 gi|218369968|emb|CAR17742.1| putative inner membrane peptidase [Escherichia coli IAI39]
          Length = 349

 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 114/265 (43%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++   S   +++ L SPGG  +   
Sbjct: 93  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKSQDQVVLRLESPGGMVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 325 FTGSATESADRLLLRWWQRGQKPLM 349


>gi|261400985|ref|ZP_05987110.1| peptidase, S49 family [Neisseria lactamica ATCC 23970]
 gi|269209100|gb|EEZ75555.1| peptidase, S49 family [Neisseria lactamica ATCC 23970]
          Length = 350

 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 109/266 (40%), Gaps = 18/266 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80
                E   P +  +   G +          E+   +     +D    +++ L SPGG  
Sbjct: 94  GGKSAETQKPRLFVLDFDGDLYARAVGALRNEITAVLSIARPEDE---VLLRLESPGGVV 150

Query: 81  YAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +        +++++ R   +T  V ++AAS GY+++C ++ IV+A  ++VGS+GV+ + P
Sbjct: 151 HGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFAIVGSVGVVAEVP 210

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            +   L K  + +  + +   K   +   E   K  Q  +  ++ ++  F + VSE+R  
Sbjct: 211 NIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQLFKQFVSENR-- 268

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           P      ++ G  W G +A  + LID +   +++    +        +++ +    +   
Sbjct: 269 PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NKQLIEVKYQEKQS 322

Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQ 285
                 L   + +E+        +  
Sbjct: 323 LIQRIGLQAEASIENLFAKFANRRAD 348


>gi|309378531|emb|CBX22884.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 350

 Score = 89.3 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 109/266 (40%), Gaps = 18/266 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80
                E   P +  +   G +          E+   +     +D    +++ L SPGG  
Sbjct: 94  GGKSAETQKPRLFVLDFDGDLYARAVGALRNEITAVLSIARPEDE---VLLRLESPGGVV 150

Query: 81  YAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +        +++++ R   +T  V ++AAS GY+++C ++ IV+A  ++VGS+GV+ + P
Sbjct: 151 HGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFAIVGSVGVVAEVP 210

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            +   L K  + +  + +   K   +   E   K  Q  +  ++ ++  F + VSE+R  
Sbjct: 211 NIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQLFKQFVSENR-- 268

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           P      ++ G  W G +A  + LID +   +++    +        +++ +    +   
Sbjct: 269 PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NKQLIEVKYQEKQS 322

Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQ 285
                 L   + +E+        +  
Sbjct: 323 LIQRIGLQAEASIENLFAKFANRRAD 348


>gi|332091664|gb|EGI96744.1| peptidase family S49 family protein [Shigella boydii 5216-82]
          Length = 346

 Score = 89.3 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 90  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 149

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 150 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 209

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 210 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 267

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 268 IDQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 321

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 322 FTGSAAESADRLLLRWWQRGQKPLM 346


>gi|269962018|ref|ZP_06176372.1| sohB protein, peptidase U7 family [Vibrio harveyi 1DA3]
 gi|269833102|gb|EEZ87207.1| sohB protein, peptidase U7 family [Vibrio harveyi 1DA3]
          Length = 353

 Score = 89.3 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 111/263 (42%), Gaps = 17/263 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
            S      PH+  +   G I+        +E+   +      D    +++ L S GG  +
Sbjct: 97  GSLDSKREPHLFVLDFNGSIDAKEVGSLREEITAVLAVAREGDE---VLLRLESGGGMVH 153

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P 
Sbjct: 154 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPN 213

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E   KA    +  ++ ++  F   +SE R  P
Sbjct: 214 FNKLLKKHDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHVLFKDFISERR--P 271

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
             +   ++ G  W G +AK++GL+D +   +++  +        ++  +      K    
Sbjct: 272 ALELEKVATGEHWFGTQAKELGLVDEISTSDDLVVAACKEKTVLAVHYV-----QKKKLA 326

Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283
             L  ++        + L ++ +
Sbjct: 327 DKLAGVASKVADSVVLKLAERGQ 349


>gi|254428540|ref|ZP_05042247.1| Peptidase family S49 N-terminal [Alcanivorax sp. DG881]
 gi|196194709|gb|EDX89668.1| Peptidase family S49 N-terminal [Alcanivorax sp. DG881]
          Length = 345

 Score = 88.9 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 113/257 (43%), Gaps = 18/257 (7%)

Query: 36  PHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
           P +  +   G ++ S      +E+   ++  S+DD    ++V L SPGG  ++       
Sbjct: 96  PRLFVLDFDGDVQASGVDHLRREITAVLQVASQDDE---VLVRLESPGGLVHSYGLASSQ 152

Query: 90  IQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
           +++++N+       V ++AAS GY+++C ++ IVAA  +++GSIGV+ Q P     L K 
Sbjct: 153 LRRIRNQGIKLTIAVDQVAASGGYMMACIADRIVAAPFAIIGSIGVVAQIPNFHRLLKKN 212

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
            + ++ + +   K   +   E   K     Q+ ++ ++  F   V ++R         ++
Sbjct: 213 DIDVELMTAGEYKRTMTMLGENTEKGRAKFQEELEDTHQLFKGFVRDNR--RGLDLDKVA 270

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
            G  W G +AK++GL+D +   +E    L  L  D        W   +     +    S+
Sbjct: 271 TGEHWFGTQAKELGLVDEIMTSDE----LLQLRKDSQTLYQVQWEAKRK--LGEKLGFSL 324

Query: 269 SSLLEDTIPLMKQTKVQ 285
            + +   +        Q
Sbjct: 325 EATVHRVLEKFWHRGSQ 341


>gi|323491950|ref|ZP_08097119.1| putative inner membrane peptidase [Vibrio brasiliensis LMG 20546]
 gi|323313808|gb|EGA66903.1| putative inner membrane peptidase [Vibrio brasiliensis LMG 20546]
          Length = 353

 Score = 88.9 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 108/261 (41%), Gaps = 14/261 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
                   PH+  +  +G I+        +E+   +      D    +++ L S GG  +
Sbjct: 97  GELDSKREPHLFVLDFKGSIDAKEVASLREEVTAILAVAREGDE---VLLRLESGGGMVH 153

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P 
Sbjct: 154 GYGLASSQLDRIKAANLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIAQLPN 213

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E   KA    +  ++ ++  F   + E R  P
Sbjct: 214 FNKVLKKYDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHGLFKDFIRERR--P 271

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
             +   ++ G  W G +A K+GL+D +   +++           +I  ++          
Sbjct: 272 ELELDKVATGEHWFGTQAHKLGLVDEIKTSDDIVVEACKDKTVLAIHYVE--KKKLTSKL 329

Query: 261 CDLKNLSISSLLEDTIPLMKQ 281
             L   +  ++L   I   ++
Sbjct: 330 AGLAGEAADNVLMKLIDRGQR 350


>gi|330503146|ref|YP_004380015.1| putative periplasmic protease [Pseudomonas mendocina NK-01]
 gi|328917432|gb|AEB58263.1| putative periplasmic protease [Pseudomonas mendocina NK-01]
          Length = 339

 Score = 88.9 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 110/269 (40%), Gaps = 19/269 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAY 81
                 + P V  +   G I+ S       E+   +     +D    +++ L S GG  +
Sbjct: 82  EKKTPPSKPRVFVLDFDGDIKASATDNLRHEVTALLSMAKAEDE---VVLRLESGGGMVH 138

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           +       + ++++    +T    ++AAS GY+++C    I++A  +++GSIGV+ Q P 
Sbjct: 139 SYGLASSQLVRIRDAGIPLTVCVDKVAASGGYMMACIGQKILSAPFAILGSIGVVAQLPN 198

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           V   L K  +  + + +   K   + F E   K  +  Q+ +++++  F   V+  R  P
Sbjct: 199 VHRLLKKHEIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLETTHELFKGFVARYR--P 256

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G +W G  A++  L+D +   ++      A      +     +   K+   
Sbjct: 257 QLDIDAIATGEVWLGMAAQERLLVDELKTSDQYLAERAAEAELFHLH----FAQKKSLQE 312

Query: 261 CDLKNLSISSLLED-TIPLMKQTKVQGLW 288
                L+ S  L+   +  + +   Q  W
Sbjct: 313 RV--GLAASMALDRFVLTWLSRLNQQRFW 339


>gi|325198698|gb|ADY94154.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis G2136]
          Length = 350

 Score = 88.9 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 97/218 (44%), Gaps = 9/218 (4%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETS 127
           +++ L SPGG  +        +++++ R    I  V ++AAS GY+++C ++ IV+A  +
Sbjct: 139 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLIVAVDKVAASGGYMMACVADKIVSAPFA 198

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           +VGS+GV+ + P +   L K  + +  + +   K   +   E   K  Q  +  ++ ++ 
Sbjct: 199 IVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 258

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F + VSE+R  P      ++ G  W G +A  + LID +   +++    +        +
Sbjct: 259 LFKQFVSENR--PQLDIEEVATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 310

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           ++ +    +         L   + +E     +   +  
Sbjct: 311 QVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRAD 348


>gi|146311850|ref|YP_001176924.1| putative periplasmic protease [Enterobacter sp. 638]
 gi|145318726|gb|ABP60873.1| inner membrane peptidase, Serine peptidase, MEROPS family S49
           [Enterobacter sp. 638]
          Length = 347

 Score = 88.9 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 110/246 (44%), Gaps = 16/246 (6%)

Query: 32  EDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           E   P V  +  +G ++        +E+   +      D    +++ L SPGG  +    
Sbjct: 95  EVTKPRVYVLDFKGSMDAHEVSSLREEVTAVLAVAKSQDQ---VVLRLESPGGVVHGYGL 151

Query: 86  IFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
               +Q++++++  +T  V ++AAS GY+++C ++ IVAA  +++GSIGV+ Q P    F
Sbjct: 152 AASQLQRLRDKQIPLTVAVDKVAASGGYMMACVADKIVAAPFAILGSIGVVAQIPNFNRF 211

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L    + I+   +   K   +   E   +  Q  ++ ++ ++H F   V   R  P    
Sbjct: 212 LKNKEIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKDFV--HRMRPSLDI 269

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             ++ G  W G +A++ GL+D VG  +++  SL     D        +   K        
Sbjct: 270 DQVATGEHWYGIQAQEKGLVDEVGTSDDLLLSLM----DGRELVGVRFTQRKRLLDRFTN 325

Query: 265 NLSISS 270
           + + S+
Sbjct: 326 SAADSA 331


>gi|260577051|ref|ZP_05845030.1| peptidase S49 [Rhodobacter sp. SW2]
 gi|259020721|gb|EEW24038.1| peptidase S49 [Rhodobacter sp. SW2]
          Length = 448

 Score = 88.9 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 87/208 (41%), Gaps = 14/208 (6%)

Query: 36  PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A I I G +                + +  +++    D     + + + S GG    
Sbjct: 82  DGIAVIEIAGTLVHRGAWIGQSSGLTSYEGIAAQLQAALADPGVRGIALDIDSFGGEVAG 141

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
              +   I+  + +KPV   V E A SAGY+++  ++ I+   T  VGSIGV+  +  + 
Sbjct: 142 AFDLADRIRAARAQKPVRAFVAEHALSAGYVLASQADRIILPRTGAVGSIGVVALHTDMS 201

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LD+ G+++  + +   K + +P+  +       MQ  ++     F R V++ R    D
Sbjct: 202 GALDQKGIAVTLIHAGSHKVDANPYQPLPEAVRSRMQAELEELRLLFARTVADGRGDRLD 261

Query: 203 KTLVL-SDGRIWTGAEAKKVGLIDVVGG 229
               L ++  ++ G  A   GL D +  
Sbjct: 262 VARALGTEAAVFRGEAAVHAGLADDLAD 289


>gi|156975136|ref|YP_001446043.1| putative periplasmic protease [Vibrio harveyi ATCC BAA-1116]
 gi|156526730|gb|ABU71816.1| hypothetical protein VIBHAR_02863 [Vibrio harveyi ATCC BAA-1116]
          Length = 353

 Score = 88.9 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 111/263 (42%), Gaps = 17/263 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
            S      PH+  +   G I+        +E+   +      D    +++ L S GG  +
Sbjct: 97  GSLDSKREPHLFVLDFNGSIDAKEVASLREEVTAVLAVAREGDE---VLLRLESGGGMVH 153

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P 
Sbjct: 154 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPN 213

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E   KA    +  ++ ++  F   +SE R  P
Sbjct: 214 FNKLLKKHDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHVLFKDFISERR--P 271

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
             +   ++ G  W G +AK++GL+D +   +++  +        ++  +      K    
Sbjct: 272 ALELEKVATGEHWFGTQAKELGLVDEISTSDDLVVAACKEKTVLAVHYV-----QKKKLA 326

Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283
             L  ++        + L ++ +
Sbjct: 327 DKLAGVASKVADSVVLKLAERGQ 349


>gi|307546775|ref|YP_003899254.1| peptidase S49 [Halomonas elongata DSM 2581]
 gi|307218799|emb|CBV44069.1| peptidase S49 [Halomonas elongata DSM 2581]
          Length = 407

 Score = 88.9 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 89/218 (40%), Gaps = 19/218 (8%)

Query: 36  PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             VA I I G +               ++ L++ I+    D S   +++++ SPGG A  
Sbjct: 55  DGVAVIPITGPVFRYANLFTEISGAVSTEMLVKDIQTALDDPSIQGIVLNIDSPGGEATG 114

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
              +   I   + +KP+        ASA Y +  A++ ++  +T+ +GS+GV+      +
Sbjct: 115 INELSDLIYNARGQKPIKAYAGGQMASALYWVGSAADEVIVDDTAQLGSVGVVLSLRKRE 174

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                   S + V S+     P P           +Q   D     F+  V+ +R++P D
Sbjct: 175 DR--PGEKSYEIVSSNAPNKRPDP---ETEAGRAQLQARTDELAAVFLDKVARNRDLPRD 229

Query: 203 KTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
           +       G + TGA A + G+ D +G  E V   L  
Sbjct: 230 EVNDRFRQGGVATGALAVEAGMADRLGSLESVIAELAG 267


>gi|46445858|ref|YP_007223.1| putative proteinase IV [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399499|emb|CAF22948.1| putative proteinase IV [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 345

 Score = 88.9 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 68/261 (26%), Positives = 112/261 (42%), Gaps = 15/261 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS--------QELIERIERISRDDSATALIVSLSSPGGSA 80
             V  ++P + ++ I G I           Q+LIE  E   +++   AL++ +++PGG+ 
Sbjct: 62  EVVASDAPVILQLNIDGIIGTENLNTQTIRQQLIESREGAYKNNRVKALLLYINTPGGTV 121

Query: 81  YAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
              + IF+ +   K +   PV   +  + AS G  I+ A++ I A++ SL+GS+GV+   
Sbjct: 122 ADADGIFQLLADYKKKYQVPVYAYIDGLCASGGMYIALAADKIYASDISLIGSVGVIAPT 181

Query: 139 PYV-KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
                  LDKLGV   ++ +   K   +P     P      + ++D  Y  FV LVS  R
Sbjct: 182 FMNVTKLLDKLGVETLTISAGKDKDAMNPLRPWKPGEEDNYRQIIDYYYTHFVDLVSSHR 241

Query: 198 NI-PYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIKDWNPP 255
                +K +      ++    A + G IDV G    E  + L       +          
Sbjct: 242 PALSKEKLVKDYGAHVFPAPNAVEKGYIDVSGATISETLKELLMTIGIDNDHYQVIRLEN 301

Query: 256 KNYWFCDLKNLSISSLLEDTI 276
           K +W       S SSLL  TI
Sbjct: 302 KGWWKGLF--SSQSSLLNGTI 320


>gi|258543792|ref|ZP_05704026.1| S49 (protease IV) family peptidase [Cardiobacterium hominis ATCC
           15826]
 gi|258520967|gb|EEV89826.1| S49 (protease IV) family peptidase [Cardiobacterium hominis ATCC
           15826]
          Length = 332

 Score = 88.9 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 106/260 (40%), Gaps = 17/260 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGS 79
           +       + P +  +   G IE S      +++   I+    +D    +++ L S GG 
Sbjct: 80  AAKHDSAQHKPRIFVLDFDGDIEASAVAQLREQISAVIQVAGTEDR---VLLRLESGGGL 136

Query: 80  AYAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +A       + +++ R+   +  V ++AAS GY+++C +N ++AA  +++GS+GV+   
Sbjct: 137 VHAYGLAASQLARLRERQIPLVIAVDKVAASGGYMMACLANELIAAPFAILGSVGVIGAL 196

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P     L +  +  +   +   K   + F E      Q  +  +  ++  F   +   R 
Sbjct: 197 PNFNELLKQHRIRYEEHTAGEHKRSLTLFGENTDADRQQFRHELAVTHDLFKNHIHRYR- 255

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P      ++ G  W GA+A +  LID +G  ++       L    S + ++        
Sbjct: 256 -PQLDIDAIATGETWYGAQAVENHLIDAIGTSDDYI-----LAHLHSHQLVQLEEHVPER 309

Query: 259 WFCDLKNLSISSLLEDTIPL 278
           W   +K+  +  +    +  
Sbjct: 310 WLDKIKHRFLGKIQARPLKA 329


>gi|218704795|ref|YP_002412314.1| putative periplasmic protease [Escherichia coli UMN026]
 gi|293404813|ref|ZP_06648805.1| periplasmic protease [Escherichia coli FVEC1412]
 gi|298380454|ref|ZP_06990053.1| protease sohB [Escherichia coli FVEC1302]
 gi|300897325|ref|ZP_07115756.1| putative signal peptide peptidase SppA [Escherichia coli MS 198-1]
 gi|331662684|ref|ZP_08363607.1| putative protease SohB [Escherichia coli TA143]
 gi|218431892|emb|CAR12777.1| putative inner membrane peptidase [Escherichia coli UMN026]
 gi|291427021|gb|EFF00048.1| periplasmic protease [Escherichia coli FVEC1412]
 gi|298277896|gb|EFI19410.1| protease sohB [Escherichia coli FVEC1302]
 gi|300358904|gb|EFJ74774.1| putative signal peptide peptidase SppA [Escherichia coli MS 198-1]
 gi|331061106|gb|EGI33070.1| putative protease SohB [Escherichia coli TA143]
          Length = 349

 Score = 88.9 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 93  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITSVLAAFKPQDQVVLRLESPGGMVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLN 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 271 IDQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349


>gi|46580575|ref|YP_011383.1| minor capsid protein C [Desulfovibrio vulgaris str. Hildenborough]
 gi|46449994|gb|AAS96643.1| minor capsid protein C [Desulfovibrio vulgaris str. Hildenborough]
          Length = 406

 Score = 88.9 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 103/257 (40%), Gaps = 11/257 (4%)

Query: 38  VARIAIRGQIE--------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
           VA + +RG +           + +   +++   D +  A+++++ SPGG+      +   
Sbjct: 51  VAVVNMRGTLTKRGSWWTTGMEGVRTTVQQALDDPAVRAVLLAIDSPGGTVDGTRELADW 110

Query: 90  I--QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
           I  +     KP+ +       SA Y I  ++  + A   ++VGS+GVL+ +     +L+ 
Sbjct: 111 IAARVADGVKPIASYADGTMCSAAYWIGGSTGRVFAPAAAIVGSVGVLWMHYDWSQYLET 170

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
            G+    + +   KA  +P + ++       Q ++D++Y  F+  VS    +        
Sbjct: 171 NGIRATYITAGSRKAAGAPEAPLSDNDKAYFQHLIDTAYTQFLDGVSAPMGLDRANPAAW 230

Query: 208 SDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           +DG+++   EA  +GL+  +         +L       +      +         + +  
Sbjct: 231 ADGQVFRATEALALGLVTAIVPDLAGAVAALSQEVHMDAKELAAKYPEAVAAIRNEAEEN 290

Query: 267 SISSLLEDTIPLMKQTK 283
           + ++  ++T    +   
Sbjct: 291 ARTAASKETAQAAQSVS 307


>gi|163867606|ref|YP_001608805.1| putative capsid protein of prophage [Bartonella tribocorum CIP
           105476]
 gi|161017252|emb|CAK00810.1| putative capsid protein of prophage [Bartonella tribocorum CIP
           105476]
          Length = 348

 Score = 88.9 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 85/220 (38%), Gaps = 16/220 (7%)

Query: 35  SPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
             +VA I + G +                + L              A+++ + S GG A 
Sbjct: 59  QNNVAIIPVHGTLVRRGAWLGALSGLTSYEGLRASFREAIAQPDVNAVLLDIDSGGGEAG 118

Query: 82  AGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
               +    Q +  +  KP+    +E A SA Y I+CA++ I    T +VGSIGV+  + 
Sbjct: 119 GIFDLVEEFQTLSKQYAKPIWAHANEFACSAAYAIACAASQIWITRTGVVGSIGVVCAHL 178

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                 +K G+    V     K   +P   ++  A   MQ      Y  FV  V+++R +
Sbjct: 179 DQSRADEKQGLKWTFVFEGDHKTHGNPHEPLSDTAQIKMQADCTLLYEMFVDWVAKNRPL 238

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             D          + G +A ++GL D  G   +  ++L  
Sbjct: 239 SADAIRDTK-AETFIGTQALELGLADAQGTLAQALEALTD 277


>gi|114047041|ref|YP_737591.1| putative periplasmic protease [Shewanella sp. MR-7]
 gi|113888483|gb|ABI42534.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Shewanella sp.
           MR-7]
          Length = 338

 Score = 88.9 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 109/237 (45%), Gaps = 10/237 (4%)

Query: 37  HVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
            V  I  +G I+ ++   L E I  I    +    ++V++ S GG  +        + ++
Sbjct: 93  KVFVIDFKGSIDAAEVASLREEISAILTIAEKGDEVVVNVESGGGMVHGYGLASSQLDRL 152

Query: 94  -KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            +   P+   V ++AAS GY+++C +N + AA  ++VGSIGV+ Q P     L K  +  
Sbjct: 153 RQAEIPLTICVDKVAASGGYMMACVANKVYAAPFAIVGSIGVVAQLPNFNRLLKKHEIDY 212

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
           +   +   K   + F E   +  Q  Q  ++ ++  F   VS+ R  P      ++ G  
Sbjct: 213 EQHTAGDFKRTLTVFGENTDEGRQKFQQELEETHVLFKAFVSKYR--PQLDLAKVATGEH 270

Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           W G +A ++GLID +   ++V   L  L  ++++ K++ +   K          S+S
Sbjct: 271 WYGQQAIELGLIDAISTSDDV---LMQLAGERTVYKLR-YQVRKKLADKIAHGASLS 323


>gi|126459873|ref|YP_001056151.1| peptidase S49 [Pyrobaculum calidifontis JCM 11548]
 gi|126249594|gb|ABO08685.1| peptidase S49 [Pyrobaculum calidifontis JCM 11548]
          Length = 522

 Score = 88.5 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 109/273 (39%), Gaps = 25/273 (9%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAY 81
           Y +         P +    +   I+      L +R+  +S+      +++ ++SPGG+  
Sbjct: 21  YLALHPPAPAPPPKIVVATLDFVIQSPDAGALAQRLVELSQRGDVAGVVLVINSPGGTVS 80

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
             EA++  ++ +   K  +     +AAS  Y ++ A++ I A  +S VGSIGV+      
Sbjct: 81  DTEALYATLRGLGKPKYAVVYG--LAASGAYYVAAAADKIYATPSSWVGSIGVIAVIWPD 138

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-NIP 200
           +   D          + P+K             +    + V+   + FV+ V+E R    
Sbjct: 139 EYLYD---APDYVYTTGPLKYYGM--------DLTSFYNAVEEVRNNFVKAVAEGRRGRL 187

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 L    ++T ++A ++GL+D +GG  +  + +      +  +   ++  P N   
Sbjct: 188 RVNATELETAALYTASQALEMGLVDKIGGVPDAVRDMAQELGLREYQ--VEYLKPLNATQ 245

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
                 +  S L ++ PL        ++ +W P
Sbjct: 246 GPASQRASLSALLNSTPL-------PIFYMWPP 271


>gi|307545278|ref|YP_003897757.1| inner membrane peptidase [Halomonas elongata DSM 2581]
 gi|307217302|emb|CBV42572.1| predicted inner membrane peptidase [Halomonas elongata DSM 2581]
          Length = 343

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 114/274 (41%), Gaps = 21/274 (7%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGS 79
           S     +   P V  +   G ++ S      +E+   ++   + D    ++V L S GG 
Sbjct: 82  SRGKQGDAPRPTVWVLDFHGDLKASATGKLAEEVSAVLDAAEQGDE---VVVRLESAGGL 138

Query: 80  AYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +A       + +++      T    ++AAS GYL++C ++ + AA  +++GSIGV+ Q 
Sbjct: 139 VHAYGHAAAEMDRLRQAGLSTTVCVDKVAASGGYLMACCADRLRAAPFAVLGSIGVVAQL 198

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P V   L +  + ++ + +   K   + F E   +  Q     +D+ +  F R V+E R 
Sbjct: 199 PNVHRLLKRHDIDVEVLTAGHYKRTLTVFGENTEEGRQKFLAELDTVHDLFKRYVAERR- 257

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P      ++ G  W G EA   GLID +G  E             +  ++   +     
Sbjct: 258 -PGLDIEAVATGEAWHGTEALPRGLIDEIGTSEAYLAERM------NDARVIALSIQARR 310

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
              +   LS+S  +E ++    +  +    ++W 
Sbjct: 311 GLAERLGLSVSQGIERSVERGVEA-LDA--SLWQ 341


>gi|121635245|ref|YP_975490.1| putative periplasmic protease [Neisseria meningitidis FAM18]
 gi|218768556|ref|YP_002343068.1| putative periplasmic protease [Neisseria meningitidis Z2491]
 gi|120866951|emb|CAM10711.1| putative secreted protease [Neisseria meningitidis FAM18]
 gi|121052564|emb|CAM08904.1| putative secreted protease [Neisseria meningitidis Z2491]
 gi|325130673|gb|EGC53414.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis OX99.30304]
 gi|325134610|gb|EGC57250.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis M13399]
 gi|325136747|gb|EGC59347.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis M0579]
 gi|325138613|gb|EGC61172.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis ES14902]
 gi|325144853|gb|EGC67141.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis M01-240013]
 gi|325201738|gb|ADY97192.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis M01-240149]
 gi|325205678|gb|ADZ01131.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis M04-240196]
 gi|325208518|gb|ADZ03970.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis NZ-05/33]
          Length = 350

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 98/218 (44%), Gaps = 9/218 (4%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127
           +++ L SPGG  +        +++++ R   +T  V ++AAS GY+++C ++ IV+A  +
Sbjct: 139 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 198

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           +VGS+GV+ + P +   L K  + +  + +   K   +   E   K  Q  +  ++ ++ 
Sbjct: 199 IVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 258

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F + VSE+R  P      ++ G  W G +A  + LID +   +++    +        +
Sbjct: 259 LFKQFVSENR--PQLDIEEVATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 310

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           ++ +    +         L   + +E     +   +  
Sbjct: 311 QVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRAD 348


>gi|239998326|ref|ZP_04718250.1| putative periplasmic protease [Neisseria gonorrhoeae 35/02]
 gi|240014504|ref|ZP_04721417.1| putative periplasmic protease [Neisseria gonorrhoeae DGI18]
 gi|240079709|ref|ZP_04724252.1| putative periplasmic protease [Neisseria gonorrhoeae FA19]
 gi|240113719|ref|ZP_04728209.1| putative periplasmic protease [Neisseria gonorrhoeae MS11]
 gi|240116462|ref|ZP_04730524.1| putative periplasmic protease [Neisseria gonorrhoeae PID18]
 gi|240121026|ref|ZP_04733988.1| putative periplasmic protease [Neisseria gonorrhoeae PID24-1]
 gi|240122343|ref|ZP_04735299.1| putative periplasmic protease [Neisseria gonorrhoeae PID332]
 gi|240125076|ref|ZP_04737962.1| putative periplasmic protease [Neisseria gonorrhoeae SK-92-679]
 gi|240127057|ref|ZP_04739718.1| putative periplasmic protease [Neisseria gonorrhoeae SK-93-1035]
 gi|254494474|ref|ZP_05107645.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|260441683|ref|ZP_05795499.1| putative periplasmic protease [Neisseria gonorrhoeae DGI2]
 gi|268599789|ref|ZP_06133956.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268602133|ref|ZP_06136300.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268680929|ref|ZP_06147791.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268683671|ref|ZP_06150533.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268685412|ref|ZP_06152274.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|226513514|gb|EEH62859.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268583920|gb|EEZ48596.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268586264|gb|EEZ50940.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268621213|gb|EEZ53613.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268623955|gb|EEZ56355.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268625696|gb|EEZ58096.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 350

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 98/218 (44%), Gaps = 9/218 (4%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127
           +++ L SPGG  +        +++++ R   +T  V ++AAS GY+++C ++ IV+A  +
Sbjct: 139 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 198

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           ++GS+GV+ + P +   L K  + +  + +   K   +   E   K  Q  +  ++ ++ 
Sbjct: 199 IIGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 258

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F + VSE+R  P      ++ G  W G +A  + LID +   +++    +        +
Sbjct: 259 LFKQFVSENR--PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 310

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           ++ +    +         L   + +E     +   +  
Sbjct: 311 QVIEVKYQEKRSLIQRIGLQAEASVEKLFAKLVNRRAD 348


>gi|294340242|emb|CAZ88614.1| putative phage minor capsid protein C [Thiomonas sp. 3As]
          Length = 307

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 16/216 (7%)

Query: 38  VARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           VA I + G +                  +  +++    D     + + + SPGGS     
Sbjct: 64  VAVIPVHGALVPRGNTMTACMGTSSYDRIGAQLDAALADPEVRQIALDIDSPGGSVQGAF 123

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +   I +       I   + ++A   YL++ A + +  + T  VGS+GV+  +  +   
Sbjct: 124 ELAGKIAQATKPTTAIVNFNALSA--AYLLASACDSVSVSSTGAVGSVGVVAMHRDLSGA 181

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
            DK GV I +V     K   +  + ++  A Q +Q  VD ++  FV  VS  RN+P D+ 
Sbjct: 182 NDKAGVKITAVYRGDKKLHGASHAPLSEVAQQELQAQVDDAFDQFVAAVSTHRNLPADRV 241

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           + L  G ++ GA+A   GL D +   +E    L  L
Sbjct: 242 VGLQAG-VFHGADALSQGLADQMETPQEAIDRLAGL 276


>gi|293409659|ref|ZP_06653235.1| protease sohB [Escherichia coli B354]
 gi|291470127|gb|EFF12611.1| protease sohB [Escherichia coli B354]
          Length = 349

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 112/259 (43%), Gaps = 12/259 (4%)

Query: 34  NSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
           + P V  +  +G ++  +   L E I   ++       +++ L SPGG  +        +
Sbjct: 99  SKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYGLAASQL 158

Query: 91  QKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    FL    
Sbjct: 159 QRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKD 218

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P      ++ 
Sbjct: 219 IDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLDIEQVAT 276

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           G  W G +A + GL+D +   +EV  SL         R++ +    +     D    S +
Sbjct: 277 GEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDRFTGSAA 330

Query: 270 SLLEDTIPLMKQTKVQGLW 288
              +  +    Q   + L 
Sbjct: 331 ESADRLLLRWWQRGQKPLM 349


>gi|15835395|ref|NP_297154.1| protease IV, putative [Chlamydia muridarum Nigg]
 gi|270285572|ref|ZP_06194966.1| protease IV, putative [Chlamydia muridarum Nigg]
 gi|270289583|ref|ZP_06195885.1| protease IV, putative [Chlamydia muridarum Weiss]
 gi|301336969|ref|ZP_07225171.1| protease IV, putative [Chlamydia muridarum MopnTet14]
 gi|7190808|gb|AAF39584.1| protease IV, putative [Chlamydia muridarum Nigg]
          Length = 332

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 129/309 (41%), Gaps = 23/309 (7%)

Query: 4   VLKKIKTRYVMLSLVTLT---VVYFSWSS------HVEDNSPHVARIAIRGQIEDS---- 50
           VL  +   +++LSL  +     ++ S  +       +   SP +A I I   I  +    
Sbjct: 22  VLGAMSFIFILLSLCVMGKDSALFVSLPNAQGVVQELGKTSPILAIIEINDAIMANSGSA 81

Query: 51  ---QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHE 105
              Q  ++ +           L++ +  PGG  +  + +  A+   K +   PV   V  
Sbjct: 82  KRLQSTLQSLSEAPYKGRVKGLLIKMDCPGGEIFEIDRMSAALSFWKQKLGIPVHVFVSG 141

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVL-FQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164
           + AS GY ++C ++ I    TSL+GSIGV    Y  +K  L +LGV    + +   KA  
Sbjct: 142 LCASGGYYVACIADRIGTTSTSLIGSIGVRSGPYFNIKEGLQRLGVETAILTAGDDKAPL 201

Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI-PYDKTLVLSDGRIWTGAEAKKVGL 223
           +PFS    +     Q +VD+ Y  FV  V + R+    +    +   R++   +A + GL
Sbjct: 202 NPFSPWTEEEYAERQGIVDALYEQFVDHVVKHRSQLSKEHVTQVLGARVFIAKQALEEGL 261

Query: 224 IDVV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282
           +D+V   QE+    L  +   +   ++   +   ++       LS S L+   + L    
Sbjct: 262 VDIVNQTQEQALDDLAGVCGVKEDYRVIGLS-SGHFLRRFSSCLSNSPLVTGKLQLAV-L 319

Query: 283 KVQGLWAVW 291
             Q   ++W
Sbjct: 320 PDQQQKSLW 328


>gi|332186917|ref|ZP_08388658.1| peptidase S49 family protein [Sphingomonas sp. S17]
 gi|332012927|gb|EGI54991.1| peptidase S49 family protein [Sphingomonas sp. S17]
          Length = 290

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 1/183 (0%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           + +R+     D    A+++++ SPGG  +       AI +V+  KPVI        SA Y
Sbjct: 82  IADRVREAGADAKVGAIVLAIRSPGGYVWGCAEAGDAIYEVRQSKPVIAVADPYCFSAAY 141

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            ++   +      +  VGS+GV   +  V  F DK+G+    + S   K    P++ ++ 
Sbjct: 142 WLATQGSGFYCTTSGEVGSVGVRSGHTDVSGFEDKIGMKTTLIASHEDKIAGHPYAPLDD 201

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQE 231
            A   +Q  VD S   F   ++  R I   +   +   G+ ++  +A   G ID V    
Sbjct: 202 AARAEIQASVDESNAAFAAAIARGRGIKASEVAGIHGTGKTFSAKQALANGAIDGVATLR 261

Query: 232 EVW 234
           +V 
Sbjct: 262 DVV 264


>gi|254805356|ref|YP_003083577.1| putative protease SohB [Neisseria meningitidis alpha14]
 gi|254668898|emb|CBA07061.1| putative protease SohB [Neisseria meningitidis alpha14]
 gi|261392171|emb|CAX49681.1| putative peptidase [Neisseria meningitidis 8013]
 gi|325128615|gb|EGC51484.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis N1568]
 gi|325204563|gb|ADZ00017.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis M01-240355]
          Length = 350

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 98/218 (44%), Gaps = 9/218 (4%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127
           +++ L SPGG  +        +++++ R   +T  V ++AAS GY+++C ++ IV+A  +
Sbjct: 139 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 198

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           +VGS+GV+ + P +   L K  + +  + +   K   +   E   K  Q  +  ++ ++ 
Sbjct: 199 IVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 258

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F + VSE+R  P      ++ G  W G +A  + LID +   +++    +        +
Sbjct: 259 LFKQFVSENR--PQLDIEEVATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 310

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           ++ +    +         L   + +E     +   +  
Sbjct: 311 QVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRAD 348


>gi|312882440|ref|ZP_07742181.1| putative periplasmic protease [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369840|gb|EFP97351.1| putative periplasmic protease [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 353

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 113/257 (43%), Gaps = 12/257 (4%)

Query: 31  VEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
            ED +PH+  +  +G I        +E I  I  +++D     +++ L S GG  +    
Sbjct: 100 AEDRAPHLFVLDFKGSIDAKEVSSLREEITAILAVAKDSD--EVLLRLESGGGMVHGYGL 157

Query: 86  IFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
               + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P     
Sbjct: 158 ASSQLDRIKAANIPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIAQMPNFNKV 217

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K  +  + + +   K   + F E   KA    +  ++ ++  F   + + R  P  + 
Sbjct: 218 LKKHDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHGLFKDFIRQRR--PDLEL 275

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             ++ G  W G +A ++GL+D +   +++           ++  ++            + 
Sbjct: 276 EKVATGEHWFGTQAHELGLVDEIKTSDDLVVEACKDKTVLAVHYVE--KKKLTSKLAGIA 333

Query: 265 NLSISSLLEDTIPLMKQ 281
             +  ++L   I   ++
Sbjct: 334 GEAADNVLMKLIDRGQR 350


>gi|254507619|ref|ZP_05119752.1| peptidase S49 [Vibrio parahaemolyticus 16]
 gi|219549506|gb|EED26498.1| peptidase S49 [Vibrio parahaemolyticus 16]
          Length = 349

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 109/263 (41%), Gaps = 17/263 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
                   PH+  +  +G I+        +E+   +      D    +++ L S GG  +
Sbjct: 93  GDLDSKREPHLFVLDFKGSIDAKEVASLREEVTAILAVAREGDE---VLLRLESGGGMVH 149

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P 
Sbjct: 150 GYGLASSQLDRIKAANLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIAQLPN 209

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E   KA +  +  ++ ++  F   + E R  P
Sbjct: 210 FNKVLKKYDIEYEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHGLFKDFIRERR--P 267

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
             +   ++ G  W G +A  +GL+D +   +++           +I  +      K    
Sbjct: 268 ELELDKVATGEHWFGTQAHDLGLVDEIKTSDDLVVEACKDKTVLAIHYV-----EKKKLT 322

Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283
             L  ++  +     + L+ + +
Sbjct: 323 SKLAGMAGEAADNVLMKLIDRGQ 345


>gi|238751909|ref|ZP_04613395.1| protease sohB [Yersinia rohdei ATCC 43380]
 gi|238709889|gb|EEQ02121.1| protease sohB [Yersinia rohdei ATCC 43380]
          Length = 348

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 115/261 (44%), Gaps = 18/261 (6%)

Query: 35  SPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
            P +  I  +G I+        +E+   +   +  D    +++ L SPGG  +       
Sbjct: 99  KPCLYVIDFKGSIDAHEVTSLREEISAVLAVATAQDE---VLLRLESPGGVVHGYGLAAS 155

Query: 89  AIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            +++++++   +T  V ++AAS GY+++C ++ I++A  +++GSIGV+ Q P     L K
Sbjct: 156 QLERLRHKGIRLTVAVDKVAASGGYMMACVADRIISAPFAIIGSIGVVAQIPNFHRLLKK 215

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
             + ++   +   K   + F E   +  +  ++ ++ ++  F + V + R  P      +
Sbjct: 216 NDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHVLFKQFVQQQR--PSLDIDAV 273

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G  W G +AK+ GL+D +G  +++   +  +       ++      +     D    S
Sbjct: 274 ATGEHWFGTQAKEKGLVDAIGTSDDLL--IAEM----DNHEVIGVRYSRRKRLMDRFTGS 327

Query: 268 ISSLLEDTIPLMKQTKVQGLW 288
            +   +  +    Q   + L 
Sbjct: 328 AAESADRLLLRWWQRGEKPLL 348


>gi|268594186|ref|ZP_06128353.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268595855|ref|ZP_06130022.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268547575|gb|EEZ42993.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268549643|gb|EEZ44662.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
          Length = 359

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 98/218 (44%), Gaps = 9/218 (4%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127
           +++ L SPGG  +        +++++ R   +T  V ++AAS GY+++C ++ IV+A  +
Sbjct: 148 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 207

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           ++GS+GV+ + P +   L K  + +  + +   K   +   E   K  Q  +  ++ ++ 
Sbjct: 208 IIGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 267

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F + VSE+R  P      ++ G  W G +A  + LID +   +++    +        +
Sbjct: 268 LFKQFVSENR--PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 319

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           ++ +    +         L   + +E     +   +  
Sbjct: 320 QVIEVKYQEKRSLIQRIGLQAEASVEKLFAKLVNRRAD 357


>gi|85059384|ref|YP_455086.1| putative periplasmic protease [Sodalis glossinidius str.
           'morsitans']
 gi|84779904|dbj|BAE74681.1| putative protease [Sodalis glossinidius str. 'morsitans']
          Length = 348

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 111/256 (43%), Gaps = 17/256 (6%)

Query: 39  ARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
             +   G ++  +      E+   +      D    +++ L SPGG  +        +Q+
Sbjct: 103 YVLDFTGSMDAGEVSSLREEITAVLSVAKSGDE---VLLRLESPGGVVHGYGLAASQLQR 159

Query: 93  VKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           ++ +   +T  V ++AAS GY+++C ++ IVAA  +++GSIGV+ Q P     L +  + 
Sbjct: 160 LREKGIPLTVAVDKVAASGGYMMACVADRIVAAPFAIIGSIGVVAQIPNFHRLLKRNDID 219

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
           ++   +   K   + F E +P   +  Q  ++ ++  F   V   R  P      ++ G 
Sbjct: 220 MELHTAGAYKRTLTLFGENSPAGREKFQQELNETHQLFKSFVQRMR--PTLDVDTVATGE 277

Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
            W G +A+ +GL+D +G  +++   L        +  ++   P    W     + +  SL
Sbjct: 278 HWYGEQAQHLGLVDAIGTSDDL---LIEQLARHEVISVRFSRPK--CWMSRFTDSAALSL 332

Query: 272 LEDTIPLMKQTKVQGL 287
            +  +   ++ +   L
Sbjct: 333 EQRLMRYWQRAQKPLL 348


>gi|226944831|ref|YP_002799904.1| putative periplasmic protease [Azotobacter vinelandii DJ]
 gi|226719758|gb|ACO78929.1| Peptidase, S49 family [Azotobacter vinelandii DJ]
          Length = 342

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 105/254 (41%), Gaps = 18/254 (7%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                 P +  +   G I  S       E+   +     +D    +++ L S GG  ++ 
Sbjct: 87  KEGKTKPRLFVLDFDGDIRASATDKLRHEVTAVLSMAKPEDE---VVLRLESGGGLVHSY 143

Query: 84  EAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                 + +++     +T    ++AAS GY+++C  + I++A  +++GSIGV+ Q P V 
Sbjct: 144 GLAASQLVRIRQAGVPLTVCVDKVAASGGYMMACIGDRILSAPFAILGSIGVVAQLPNVH 203

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L +  +  + + +   K   + F E   K  +  Q+ +++++  F   V+  R  P  
Sbjct: 204 RLLKRHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLETTHELFKNFVARYR--PQL 261

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               ++ G IW G  A +  L+D +   +E    L A      + ++   +  +     +
Sbjct: 262 TIDEIATGEIWLGQSALEKQLVDELMTSDE---YLAAKAGSAELFQL---HYAERKSLQE 315

Query: 263 LKNLSISSLLEDTI 276
              L  +  ++  +
Sbjct: 316 RFGLGAALAVDRVL 329


>gi|212712418|ref|ZP_03320546.1| hypothetical protein PROVALCAL_03507 [Providencia alcalifaciens DSM
           30120]
 gi|212684941|gb|EEB44469.1| hypothetical protein PROVALCAL_03507 [Providencia alcalifaciens DSM
           30120]
          Length = 483

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 85/214 (39%), Gaps = 14/214 (6%)

Query: 38  VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           +A + + G              +     +   +++   D     +++ + SPGG A    
Sbjct: 68  IAVLPVSGTLVHKLGAMRPFSGMTGYDGITAFLKQAVTDPEVKGILLDIDSPGGQASGAF 127

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
                + ++   KP+    H+MA SA  L++ A +  +  +T+ +GSIGV+  +   +  
Sbjct: 128 DCADMVARLGQEKPIWALCHDMACSAAMLLASACSRRLVTQTAKIGSIGVMMAHANREQQ 187

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L + GV I  + S   K + + F  +  +     Q  +D +   FV+ V+    +P    
Sbjct: 188 LAQTGVDITLIYSGAHKVDGNAFQALPERVRADFQRQIDEARTLFVQKVAGYLGVPESTI 247

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
              ++   + G     VGL D +    +    + 
Sbjct: 248 RE-TEAATYQGQAGIDVGLADDMVNAADAVDVMA 280


>gi|163867766|ref|YP_001608968.1| putative capsid protein of prophage [Bartonella tribocorum CIP
           105476]
 gi|161017415|emb|CAK00973.1| putative capsid protein of prophage [Bartonella tribocorum CIP
           105476]
          Length = 349

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 85/220 (38%), Gaps = 16/220 (7%)

Query: 35  SPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
             +VA I + G +                + L              A+++ + S GG A 
Sbjct: 59  QNNVAIIPVHGTLVRRGAWLGALSGLTSYEGLRASFREAIAQPDVNAVLLDIDSGGGEAG 118

Query: 82  AGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
               +    Q +  +  KP+    +E A SA Y I+CA++ I    T +VGSIGV+  + 
Sbjct: 119 GIFDLVEEFQTLSKQYAKPIWAHANEFACSAAYAIACAASQIWITRTGVVGSIGVVCAHL 178

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                 +K G+    V     K   +P   ++  A   MQ      Y  FV  V+++R +
Sbjct: 179 DQSRADEKQGLKWTFVFEGDHKTHGNPHEPLSDTAQIKMQADCTLLYEMFVDWVAKNRPL 238

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             D          + G +A ++GL D  G   +  ++L  
Sbjct: 239 SADAIRDTK-AETFIGTQALELGLADAQGTLAQALEALTD 277


>gi|242239357|ref|YP_002987538.1| periplasmic protease [Dickeya dadantii Ech703]
 gi|242131414|gb|ACS85716.1| Peptidase S49 domain protein [Dickeya dadantii Ech703]
          Length = 348

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 117/270 (43%), Gaps = 18/270 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGS 79
           +     +   P +  +   G ++  +      E+   +     +D    +++ L SPGG 
Sbjct: 90  AKRGEEKRFKPCLYVLDFNGSMDAGEVSSLREEISAVLAVARPEDE---VLLRLESPGGV 146

Query: 80  AYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +        +Q+++ +   +T    ++AAS GY+++C ++ IVAA  +++GSIGV+ Q 
Sbjct: 147 VHGYGLAASQLQRLRQKGIRLTVTVDKVAASGGYMMACVADRIVAAPFAIIGSIGVVAQI 206

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P    FL    + ++   +   K   + F E      +  ++ ++ ++  F + VS+ R 
Sbjct: 207 PNFNRFLKNKDIDVELHTAGQFKRTLTLFGENTDTGREKFREELNETHELFKQFVSQMR- 265

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P      ++ G  W G++AK++GL+DV+G  +++   +  +       ++      +  
Sbjct: 266 -PSLDIEAVATGEHWFGSQAKELGLVDVIGTSDDLL--IAEM----DNHEVLAVRYTRRK 318

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
            F D    S     E  +    Q   Q L 
Sbjct: 319 RFLDRLTGSAGDSAERLMLRWWQRGNQPLL 348


>gi|259908332|ref|YP_002648688.1| putative periplasmic protease [Erwinia pyrifoliae Ep1/96]
 gi|224963954|emb|CAX55459.1| Peptidase family U7 protein [Erwinia pyrifoliae Ep1/96]
 gi|283478271|emb|CAY74187.1| putative protease [Erwinia pyrifoliae DSM 12163]
          Length = 349

 Score = 88.1 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 114/265 (43%), Gaps = 18/265 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           V      +  I  +G +   +      E+   +    + D    +++ L SPGG  +   
Sbjct: 96  VSKGKSTLYVIDFKGSMGAGEVSSLREEVSAVMAVAEKGDE---VLLRLESPGGVVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T  V ++AAS GY+++C ++ IVAA  S++GSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVAVDKVAASGGYMMACVADRIVAAPFSIIGSIGVVAQIPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L +  + ++   +   K   + F E   +  +  ++ ++ ++  F + V + R  P   
Sbjct: 213 LLKRNEIDVELHTAGEYKRTLTLFGENTEQGREKFREDLNETHQLFKQFVHQMR--PTLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +G  +++     A        ++      +     D 
Sbjct: 271 IDSVATGEHWYGQQALEKGLVDAIGTSDDLIIDHIAKH------QVIGVRYARRKGMMDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +  LE  +  + Q   + L 
Sbjct: 325 FTQSATLSLERLLLRIWQRGDKPLL 349


>gi|144898890|emb|CAM75754.1| Peptidase S49 [Magnetospirillum gryphiswaldense MSR-1]
          Length = 410

 Score = 88.1 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 101/258 (39%), Gaps = 16/258 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQELIERI-------------ERISRDDSATALIVS 72
           + S+ V      +A + + G +      +                E  + D    A+++ 
Sbjct: 46  APSADVAVTPDGIAIVPVVGTLVARSGYLGAASGLTGYGDIADAIEAAATDPGVRAILLD 105

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + S GG       +   IQ ++++  KP+     E A SA Y I+C ++ I   +T  VG
Sbjct: 106 VDSSGGEVGGLFDLVDHIQAIRSQCGKPIWAVADEAALSAAYAIACTADRIYVTQTGEVG 165

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+  +        + G++   V +   K + +P   ++  A   +Q  VD+ Y  FV
Sbjct: 166 SIGVVAVHRDESGADAQAGLAWTFVHAGAAKVDGNPHQPLSDSARAGLQADVDALYGRFV 225

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
            LV+  R  P +     ++  ++ G +A   GL D VG        L       SIR   
Sbjct: 226 ALVARCRKQPPEAIRA-TEAAVYRGDQAVAAGLADKVGTLRVALADLGTTLARPSIRSPV 284

Query: 251 DWNPPKNYWFCDLKNLSI 268
              P +        ++ +
Sbjct: 285 LSKPKETTMSEQTGDIPV 302


>gi|145598216|ref|YP_001162292.1| putative periplasmic protease [Yersinia pestis Pestoides F]
 gi|108775493|gb|ABG18012.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Yersinia
           pestis Nepal516]
 gi|108779482|gb|ABG13540.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Yersinia
           pestis Antiqua]
 gi|145209912|gb|ABP39319.1| peptidase family U7 protein [Yersinia pestis Pestoides F]
          Length = 343

 Score = 88.1 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/267 (20%), Positives = 115/267 (43%), Gaps = 12/267 (4%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATA-LIVSLSSPGGSAYA 82
           + S  V    P +  I  +G I   +   L E I  I    +A   +++ L SPGG  + 
Sbjct: 85  AKSGAVAAVKPCLYVIDFKGSIGAQEVSSLREEISAILAVATAQDEVLLRLESPGGVVHG 144

Query: 83  GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + +++ R   +T  V ++AAS GY+++C ++ I+ A  +++GSIGV+ Q P  
Sbjct: 145 YGLAASQLARLRQRGIRLTVAVDKVAASGGYMMACVADRIICAPFAIIGSIGVVAQIPNF 204

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  + ++   +   K   + F E   +  +  ++ ++ ++  F + V + R  P 
Sbjct: 205 HRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVQQQR--PS 262

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +AK+ GL+D +G  +++   +  +       ++            
Sbjct: 263 LDIDAVATGEHWFGTQAKEKGLVDAIGTSDDLL--IAEM----DNHEVIGVRYSHRKRLI 316

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           +    S +  ++  +    Q   + L 
Sbjct: 317 ERFMGSATESVDSLLLRWWQRGEKPLL 343


>gi|257465744|ref|ZP_05630115.1| putative periplasmic protease [Actinobacillus minor 202]
 gi|257451404|gb|EEV25447.1| putative periplasmic protease [Actinobacillus minor 202]
          Length = 350

 Score = 88.1 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 103/231 (44%), Gaps = 12/231 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAAS 109
           +E+   +     +D    +++ L SPGG  +        +Q++K +   +T  V ++AAS
Sbjct: 124 KEITALLSIAKPNDE---VLLKLESPGGVVHGYGLAASQLQRLKAKNIPLTVAVDKVAAS 180

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
            GY+++C ++ IV+A  +++GSIGV+ Q P +   L K  + +  + +   K   +   E
Sbjct: 181 GGYMMACVADKIVSAPFAVIGSIGVVAQVPNIHRLLKKHDIDVDVMTAGEYKRTVTLVGE 240

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
              K  Q  Q  ++ ++  F + V++ R  P      ++ G  W G +A  + L+D +  
Sbjct: 241 NTEKGKQKFQQELEETHDLFKQFVTQHR--PQLNIDKIATGEHWFGQQALALNLVDEIAT 298

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            +++             ++I +    +         L +   +E+ +  + 
Sbjct: 299 SDDLLVKAVE------DKEIIELKYKEKKNLTQRIGLQMEQSVENLLGKIL 343


>gi|126667357|ref|ZP_01738329.1| predicted inner membrane peptidase [Marinobacter sp. ELB17]
 gi|126628113|gb|EAZ98738.1| predicted inner membrane peptidase [Marinobacter sp. ELB17]
          Length = 362

 Score = 88.1 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 104/255 (40%), Gaps = 17/255 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQELIERIERIS------RDDSATALIVSLSSPGGS 79
           +  +  +     V  +   G I+ S    E + R               ++V L S GG 
Sbjct: 102 TAETADDAVKTRVFVLDFDGDIKASDT--EGLRRAITAVLSVAKPEHDEVVVRLESGGGM 159

Query: 80  AYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            ++       + +++ +   +T    ++AAS GY+++C ++ IVA+  +++GSIGV+ Q 
Sbjct: 160 VHSYGLAAAQLDRIRAKGLNLTVCVDKVAASGGYMMACVADRIVASPFAILGSIGVVAQL 219

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P V   L K  V  + + +   K   + F E   K  Q     ++  +  F   V E R 
Sbjct: 220 PNVHRLLKKNNVDFEVLTAGEHKRTLTVFGENTDKGRQKFLADLEDIHQLFKDYVGERR- 278

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P      +++G IW G  A  V LIDV+   +E               ++   +  +  
Sbjct: 279 -PQLDMAAVANGDIWFGRRALDVKLIDVIQTSDEYLLEAAERA------ELVLVSYQRKR 331

Query: 259 WFCDLKNLSISSLLE 273
              +   L+ S+ +E
Sbjct: 332 TLPEKLGLAASAAVE 346


>gi|146307553|ref|YP_001188018.1| putative periplasmic protease [Pseudomonas mendocina ymp]
 gi|145575754|gb|ABP85286.1| inner membrane peptidase, Serine peptidase, MEROPS family S49
           [Pseudomonas mendocina ymp]
          Length = 339

 Score = 88.1 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 110/261 (42%), Gaps = 19/261 (7%)

Query: 36  PHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
           P V  +   G I+ S       E+   +     DD    +++ L S GG  ++       
Sbjct: 90  PRVFVLDFDGDIKASATDNLRHEVTALLSLAKADDE---VVLRLESGGGMVHSYGLASSQ 146

Query: 90  IQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
           + ++++    +T    ++AAS GY+++C    I+AA  +++GSIGV+ Q P V   L K 
Sbjct: 147 LVRIRDAGIPLTVCVDKVAASGGYMMACIGQKILAAPFAILGSIGVVAQLPNVHRLLKKH 206

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
            +  + + +   K   + F E   K  +  Q+ + +++  F   V+  R  P      ++
Sbjct: 207 DIDFEVLTAGEYKRTLTIFGENTEKGREKFQEDLQTTHDLFKGFVARYR--PQLDIDAIA 264

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
            G +W G  A++  L+D +   ++    L    V+  +  +            +   L+ 
Sbjct: 265 TGEVWLGMAAQERLLVDELKTSDQ---YLAERAVEAELFHLHFAQKKS---LQERVGLAA 318

Query: 269 SSLLED-TIPLMKQTKVQGLW 288
           S+ L+   +  + +   Q  W
Sbjct: 319 SAALDRFVLTWLSRLNQQRFW 339


>gi|82776631|ref|YP_402980.1| putative periplasmic protease [Shigella dysenteriae Sd197]
 gi|309789066|ref|ZP_07683661.1| peptidase family S49 family protein [Shigella dysenteriae 1617]
 gi|81240779|gb|ABB61489.1| putative protease [Shigella dysenteriae Sd197]
 gi|308923337|gb|EFP68849.1| peptidase family S49 family protein [Shigella dysenteriae 1617]
          Length = 346

 Score = 88.1 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 90  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 149

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 150 LASSQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 209

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 210 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 267

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 268 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 321

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 322 FTGSAAESADRLLLRWWQRGQKPLM 346


>gi|114319494|ref|YP_741177.1| putative periplasmic protease [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225888|gb|ABI55687.1| inner membrane peptidase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 332

 Score = 88.1 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 99/257 (38%), Gaps = 17/257 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
            +   P V  +   G +  S      +E+   +     +    A+++ L S GG+     
Sbjct: 86  DDPERPRVYVLDFVGDMRASRAQTLREEVTAILSMARAERD--AVLLRLDSQGGTVPGYG 143

Query: 85  AIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                + +++         +  +AAS GYL++C ++ IVAA  ++VGSIGV+   P    
Sbjct: 144 LAASQLARLREAGIPLTVSIDRVAASGGYLMACVADRIVAAPFAVVGSIGVIGALPNFNR 203

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL +  +  +   +   K   S F E   +A +  +  ++S +  F   +   R  P   
Sbjct: 204 FLRRHDIDFEQHTAGEWKRTLSLFGENTDEAREKFRQDLESVHRHFKGFIQRYR--PALD 261

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W   EA  +GL+D +G  ++       L   +   ++          F   
Sbjct: 262 LDQVATGEYWLAEEALGLGLVDELGTSDD------WLLRRRDDHRLVQLRYRHREPFGQR 315

Query: 264 KNLSISSLLEDTIPLMK 280
              +    L   +  ++
Sbjct: 316 WLKAAQGALGSRLQRLR 332


>gi|161870442|ref|YP_001599614.1| putative periplasmic protease [Neisseria meningitidis 053442]
 gi|161595995|gb|ABX73655.1| serine protease SohB [Neisseria meningitidis 053442]
 gi|316983835|gb|EFV62815.1| peptidase family S49 family protein [Neisseria meningitidis H44/76]
 gi|319410803|emb|CBY91190.1| putative peptidase [Neisseria meningitidis WUE 2594]
 gi|325140763|gb|EGC63277.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis CU385]
 gi|325199814|gb|ADY95269.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis H44/76]
          Length = 350

 Score = 88.1 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 97/218 (44%), Gaps = 9/218 (4%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127
           +++ L SPGG  +        +++++ R   +T  V ++AAS GY+++C ++ I +A  +
Sbjct: 139 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIASAPFA 198

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           +VGS+GV+ + P +   L K  + +  + +   K   +   E   K  Q  +  ++ ++ 
Sbjct: 199 IVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 258

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F + VSE+R  P      ++ G  W G +A  + LID +   +++    +        +
Sbjct: 259 LFKQFVSENR--PQLDIEEVATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 310

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           ++ +    +         L   + +E     +   +  
Sbjct: 311 QVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRAD 348


>gi|260549707|ref|ZP_05823924.1| periplasmic serine protease [Acinetobacter sp. RUH2624]
 gi|260407224|gb|EEX00700.1| periplasmic serine protease [Acinetobacter sp. RUH2624]
          Length = 320

 Score = 88.1 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 109/260 (41%), Gaps = 13/260 (5%)

Query: 33  DNSPHVARIAIRGQIEDS--QELIERIERISRDDSA--TALIVSLSSPGGSAYAGEAIFR 88
            N+  +  +  +G I+ S  + L E I  I     A    ++V L SPGG  +       
Sbjct: 54  KNNQKIFVLDFKGDIQASAVENLREEITLILATAKAGRDRVVVRLESPGGMVHGYGLAAA 113

Query: 89  AIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            + ++++   ++T    ++AAS GY+++C +N I++A  ++VGSIGV+ Q P     L +
Sbjct: 114 QLVRLRDAGFLLTICVDKVAASGGYMMACIANEIISAPFAVVGSIGVVAQVPNFNRLLKE 173

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
             V  +   +   K   + F E  P+     ++ +  ++  F   V + R  P      +
Sbjct: 174 HNVDFELYTAGQYKRTVTMFGENTPEGKAKFEEELQQTHILFKHFVEKYR--PQLNVDKV 231

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G  W G +A  + L+D +   +E   +L           +   N  K     +   L 
Sbjct: 232 ATGEHWYGQDALDLNLVDKLQTSDEYLLALL------PQHDVYVINTRKKATLGEKLGLQ 285

Query: 268 ISSLLEDTIPLMKQTKVQGL 287
            + + +  IP +       L
Sbjct: 286 AAQMADSLIPAVMHKVADTL 305


>gi|148980525|ref|ZP_01816098.1| predicted inner membrane peptidase [Vibrionales bacterium SWAT-3]
 gi|145961178|gb|EDK26493.1| predicted inner membrane peptidase [Vibrionales bacterium SWAT-3]
          Length = 353

 Score = 88.1 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 111/263 (42%), Gaps = 17/263 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
                   PH+  +   G I+        +E+   +      D    +++ L S GG  +
Sbjct: 97  GELDSKREPHLFVLDFNGSIDAKEVASLREEVTAVLAVAREGDE---VLLKLESGGGMVH 153

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P 
Sbjct: 154 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIAQLPN 213

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E + KA +  ++ ++ ++  F   + + R  P
Sbjct: 214 FNKLLKKHDIEFEQLTAGEYKRTLTMFGENSDKAREKFKEELEETHGLFKDFIRDHR--P 271

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +A ++GL+D +   +++           +I  +      K    
Sbjct: 272 ALDLDKVATGEHWFGTQAHELGLVDEIRTSDDLVVEACKDKTVLAIHYV-----QKKKLS 326

Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283
             L  ++  S     + L+++ +
Sbjct: 327 DKLAGVAGKSADSVLMKLIERGQ 349


>gi|304396079|ref|ZP_07377961.1| Peptidase S49 domain protein [Pantoea sp. aB]
 gi|304356448|gb|EFM20813.1| Peptidase S49 domain protein [Pantoea sp. aB]
          Length = 348

 Score = 88.1 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 115/264 (43%), Gaps = 12/264 (4%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGEA 85
              +   P +  +  +G ++  +   L E I   ++       +++ L SPGG  +    
Sbjct: 93  GQTDSVKPTLYVLDFKGSMDAGEVTSLREEISAVLAVKQPGDEVLLRLESPGGVVHGYGL 152

Query: 86  IFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
               +Q+++++   IT  V ++AAS GY+++C ++ IVAA  S++GSIGV+ Q P     
Sbjct: 153 AASQLQRLRDQGLRITAAVDKVAASGGYMMACVADRIVAAPFSIIGSIGVVAQIPNFNRL 212

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L +  + ++   +   K   + F E   +  +  Q+ +D ++  F + V + R  P    
Sbjct: 213 LKRNDIDVELHTAGQYKRTLTLFGENTEEGREKFQEDLDETHLLFKQFVHQMR--PSLDI 270

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             ++ G  W G +A  +GLID +G  +++               +   +  +     D  
Sbjct: 271 NKVATGEHWYGRQALNLGLIDEIGTSDDLI------IRQMDQFNVLGVHYARRRKMMDRF 324

Query: 265 NLSISSLLEDTIPLMKQTKVQGLW 288
             S  S+ E  +  + Q   + L 
Sbjct: 325 TQSAGSVAERLLLKLWQRGEKPLL 348


>gi|119476008|ref|ZP_01616360.1| sohB protein, peptidase U7 family [marine gamma proteobacterium
           HTCC2143]
 gi|119450635|gb|EAW31869.1| sohB protein, peptidase U7 family [marine gamma proteobacterium
           HTCC2143]
          Length = 345

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 105/264 (39%), Gaps = 17/264 (6%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +ED    +  +   G ++ S      +E+   +   + DD    +++ L SPGG  + 
Sbjct: 89  GELEDPKKRIYVLTFDGDVKASAVSSLREEITAILTVATADDE---VVLCLESPGGMVHT 145

Query: 83  GEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + ++  +       V  +AAS GY+++C  N I+AA  +++GSIGV+ + P  
Sbjct: 146 YGLAASQLARITKQNIPLTVVVDAVAASGGYMMACIGNKILAAPFAVIGSIGVVAELPNF 205

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  +  +   +   K   + F E   K      + ++ ++  F   VSE R  P 
Sbjct: 206 HRLLKKNDIDFELFTAGEHKRTVTMFGENTDKGKAKFVEELEDTHELFKSFVSEHR--PQ 263

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G +W G  A +  LID +   +E    L +   D +I ++            
Sbjct: 264 VNVAEVATGEVWYGQRAIENNLIDDIQTSDE---YLMSKRSDSNIYRVSFETKK--TLQE 318

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQ 285
            L   + S        L+++    
Sbjct: 319 KLGFAAQSVTEGVVNKLVERFSSD 342


>gi|240948297|ref|ZP_04752683.1| putative periplasmic protease [Actinobacillus minor NM305]
 gi|240297336|gb|EER47877.1| putative periplasmic protease [Actinobacillus minor NM305]
          Length = 350

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 102/231 (44%), Gaps = 12/231 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAAS 109
           +E+   +     +D    +++ L SPGG  +        +Q++K +   +T  V ++AAS
Sbjct: 124 KEITALLSIAKPNDE---VLLKLESPGGVVHGYGLAASQLQRLKAKNIPLTVAVDKVAAS 180

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
            GY+++C ++ I++A  +++GSIGV+ Q P +   L K  + +  + +   K   +   E
Sbjct: 181 GGYMMACVADKIISAPFAVIGSIGVVAQVPNIHRLLKKHDIDVDVMTAGEYKRTVTLVGE 240

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
              K  Q  Q  ++ ++  F + V++ R  P      ++ G  W G +A  + L+D +  
Sbjct: 241 NTEKGKQKFQQELEETHDLFKQFVTQHR--PQLDIEKIATGEHWFGQQALALNLVDEIAT 298

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            +++             ++I +    +         L +   +E  +  M 
Sbjct: 299 SDDLLVKAVE------DKEIIELKYKEKKNLTQRIGLQMEQSVESLLGKML 343


>gi|288549698|ref|ZP_05967891.2| SohB protein, peptidase U7 family [Enterobacter cancerogenus ATCC
           35316]
 gi|288317953|gb|EFC56891.1| SohB protein, peptidase U7 family [Enterobacter cancerogenus ATCC
           35316]
          Length = 351

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 108/248 (43%), Gaps = 16/248 (6%)

Query: 30  HVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
             +   P V  +  +G ++        +E+   +      D    ++V L SPGG  +  
Sbjct: 97  PQDAGKPRVYVLDFKGSMDAHEVSSLREEVTAVLAVAKPQDQ---VVVRLESPGGVVHGY 153

Query: 84  EAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                 +Q+++ ++  +T  V ++AAS GY+++C ++ IVAA  S++GSIGV+ Q P   
Sbjct: 154 GLAASQLQRLREKQIPLTVAVDKVAASGGYMMACVADKIVAAPFSIIGSIGVVAQIPNFN 213

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
            FL    + I+   +   K   +   E   +  Q  ++ ++ ++H F   V   R  P  
Sbjct: 214 RFLKNKEIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKDFV--HRMRPTL 271

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               ++ G  W G +A++ GL+D VG  +++  +L              +   K      
Sbjct: 272 DIDSVATGEHWYGIQAQEKGLVDDVGTSDDLLLNLMEGHELVG----VRFTQRKRLLDRF 327

Query: 263 LKNLSISS 270
             + + S+
Sbjct: 328 TNSAAESA 335


>gi|22125947|ref|NP_669370.1| putative periplasmic protease [Yersinia pestis KIM 10]
 gi|45441813|ref|NP_993352.1| putative periplasmic protease [Yersinia pestis biovar Microtus str.
           91001]
 gi|51596464|ref|YP_070655.1| periplasmic protease [Yersinia pseudotuberculosis IP 32953]
 gi|149365865|ref|ZP_01887900.1| peptidase family U7 protein [Yersinia pestis CA88-4125]
 gi|153948350|ref|YP_001400900.1| periplasmic protease [Yersinia pseudotuberculosis IP 31758]
 gi|162418164|ref|YP_001606741.1| putative periplasmic protease [Yersinia pestis Angola]
 gi|165927409|ref|ZP_02223241.1| peptidase, S49 family [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938261|ref|ZP_02226820.1| peptidase, S49 family [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166010779|ref|ZP_02231677.1| peptidase, S49 family [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166210633|ref|ZP_02236668.1| peptidase, S49 family [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400849|ref|ZP_02306355.1| peptidase, S49 family [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420332|ref|ZP_02312085.1| peptidase, S49 family [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424898|ref|ZP_02316651.1| peptidase, S49 family [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170024271|ref|YP_001720776.1| putative periplasmic protease [Yersinia pseudotuberculosis YPIII]
 gi|186895513|ref|YP_001872625.1| putative periplasmic protease [Yersinia pseudotuberculosis PB1/+]
 gi|218929312|ref|YP_002347187.1| putative periplasmic protease [Yersinia pestis CO92]
 gi|229358044|ref|YP_651485.2| putative periplasmic protease [Yersinia pestis Antiqua]
 gi|229559850|ref|YP_647612.2| putative periplasmic protease [Yersinia pestis Nepal516]
 gi|229894900|ref|ZP_04510078.1| predicted inner membrane peptidase [Yersinia pestis Pestoides A]
 gi|229897643|ref|ZP_04512799.1| predicted inner membrane peptidase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229898288|ref|ZP_04513435.1| predicted inner membrane peptidase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902147|ref|ZP_04517268.1| predicted inner membrane peptidase [Yersinia pestis Nepal516]
 gi|270490621|ref|ZP_06207695.1| putative signal peptide peptidase SppA, 36K type [Yersinia pestis
           KIM D27]
 gi|294503746|ref|YP_003567808.1| peptidase family U7 protein [Yersinia pestis Z176003]
 gi|21958888|gb|AAM85621.1|AE013808_4 putative protease [Yersinia pestis KIM 10]
 gi|45436675|gb|AAS62229.1| peptidase family U7 protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51589746|emb|CAH21376.1| peptidase family U7 protein [Yersinia pseudotuberculosis IP 32953]
 gi|115347923|emb|CAL20845.1| peptidase family U7 protein [Yersinia pestis CO92]
 gi|149292278|gb|EDM42352.1| peptidase family U7 protein [Yersinia pestis CA88-4125]
 gi|152959845|gb|ABS47306.1| peptidase, S49 family [Yersinia pseudotuberculosis IP 31758]
 gi|162350979|gb|ABX84927.1| peptidase, S49 family [Yersinia pestis Angola]
 gi|165913922|gb|EDR32540.1| peptidase, S49 family [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165920675|gb|EDR37923.1| peptidase, S49 family [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990481|gb|EDR42782.1| peptidase, S49 family [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207813|gb|EDR52293.1| peptidase, S49 family [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962027|gb|EDR58048.1| peptidase, S49 family [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049702|gb|EDR61110.1| peptidase, S49 family [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056085|gb|EDR65863.1| peptidase, S49 family [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169750805|gb|ACA68323.1| Peptidase S49 domain protein [Yersinia pseudotuberculosis YPIII]
 gi|186698539|gb|ACC89168.1| Peptidase S49 domain protein [Yersinia pseudotuberculosis PB1/+]
 gi|229681043|gb|EEO77138.1| predicted inner membrane peptidase [Yersinia pestis Nepal516]
 gi|229688578|gb|EEO80647.1| predicted inner membrane peptidase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229693980|gb|EEO84029.1| predicted inner membrane peptidase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701995|gb|EEO90016.1| predicted inner membrane peptidase [Yersinia pestis Pestoides A]
 gi|262362134|gb|ACY58855.1| peptidase family U7 protein [Yersinia pestis D106004]
 gi|270339125|gb|EFA49902.1| putative signal peptide peptidase SppA, 36K type [Yersinia pestis
           KIM D27]
 gi|294354205|gb|ADE64546.1| peptidase family U7 protein [Yersinia pestis Z176003]
 gi|320014881|gb|ADV98452.1| putative inner membrane peptidase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 348

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/267 (20%), Positives = 115/267 (43%), Gaps = 12/267 (4%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATA-LIVSLSSPGGSAYA 82
           + S  V    P +  I  +G I   +   L E I  I    +A   +++ L SPGG  + 
Sbjct: 90  AKSGAVAAVKPCLYVIDFKGSIGAQEVSSLREEISAILAVATAQDEVLLRLESPGGVVHG 149

Query: 83  GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + +++ R   +T  V ++AAS GY+++C ++ I+ A  +++GSIGV+ Q P  
Sbjct: 150 YGLAASQLARLRQRGIRLTVAVDKVAASGGYMMACVADRIICAPFAIIGSIGVVAQIPNF 209

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  + ++   +   K   + F E   +  +  ++ ++ ++  F + V + R  P 
Sbjct: 210 HRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVQQQR--PS 267

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +AK+ GL+D +G  +++   +  +       ++            
Sbjct: 268 LDIDAVATGEHWFGTQAKEKGLVDAIGTSDDLL--IAEM----DNHEVIGVRYSHRKRLI 321

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           +    S +  ++  +    Q   + L 
Sbjct: 322 ERFMGSATESVDSLLLRWWQRGEKPLL 348


>gi|238757073|ref|ZP_04618261.1| protease sohB [Yersinia aldovae ATCC 35236]
 gi|238704903|gb|EEP97432.1| protease sohB [Yersinia aldovae ATCC 35236]
          Length = 348

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 118/270 (43%), Gaps = 18/270 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGS 79
           + +  +    P +  I  +G I+        +E+   +   +  D    +++ L SPGG 
Sbjct: 90  AKAGAIAAVKPCLYVIDFKGSIDAHEVTSLREEISAVLAVATAQDE---VLLRLESPGGV 146

Query: 80  AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +        +++++++   +T  V ++AAS GY+++C ++ I++A  +++GSIGV+ Q 
Sbjct: 147 VHGYGLAASQLERLRHKGIRLTVAVDKVAASGGYMMACVADRIISAPFAIIGSIGVVAQI 206

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P     L K  + ++   +   K   + F E   +  +  ++ ++ ++  F + V + R 
Sbjct: 207 PNFHRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVQQQR- 265

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P      ++ G  W G +AK+ GL+D +G  +++   +  +       ++      +  
Sbjct: 266 -PSLDIDAVATGEHWFGTQAKEKGLVDAIGTSDDLL--IAEM----DNHEVIGVRYSRRK 318

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
              D    S +   +  +    Q   + L 
Sbjct: 319 RLMDRFTGSAAESADRLLLRWWQRGEKPLL 348


>gi|120602110|ref|YP_966510.1| peptidase S49 [Desulfovibrio vulgaris DP4]
 gi|120562339|gb|ABM28083.1| protein C, Serine peptidase, MEROPS family S49 [Desulfovibrio
           vulgaris DP4]
          Length = 408

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 94/228 (41%), Gaps = 11/228 (4%)

Query: 38  VARIAIRGQIE--------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
           VA + +RG +           + +   +++   D +  A+++++ SPGG+      +   
Sbjct: 51  VAVVNMRGTLTKRGSWWTTGMEGVRTTVQQALDDPAVRAVLLAIDSPGGTVDGTRELADW 110

Query: 90  I--QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
           I  +     KP+ +       SA Y I  ++  + A   +LVGS+GVL+ +     +L+ 
Sbjct: 111 IAARVADGGKPIASYADGTMCSAAYWIGGSTGRVFAPAAALVGSVGVLWMHYDWSQYLET 170

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
            G+    + +   KA  +P + ++       Q ++D++Y  F+  VS    +        
Sbjct: 171 NGIRATYITAGSRKAAGAPEAPLSDNDKAYFQHLIDTAYTQFLDGVSAPMGLDRANPAAW 230

Query: 208 SDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIKDWNP 254
           +DG+++   EA  +GL+  +         +L       +      +  
Sbjct: 231 ADGQVFRATEALALGLVTAIVPDLAGAVAALSQEVHMDAKELAAKYPE 278


>gi|119503274|ref|ZP_01625358.1| Cell surface receptor IPT/TIG [marine gamma proteobacterium
           HTCC2080]
 gi|119460920|gb|EAW42011.1| Cell surface receptor IPT/TIG [marine gamma proteobacterium
           HTCC2080]
          Length = 360

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/270 (21%), Positives = 109/270 (40%), Gaps = 12/270 (4%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGS 79
              S S   E +   +  +  +G I  S+   L E I            +++ L SPGG 
Sbjct: 98  FGSSDSKDDEKSGSRLFVLRFQGDISASETESLREEISAIAPELRKGDEVLLCLESPGGM 157

Query: 80  AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            ++       +Q++++    +T  V ++AAS GY+++C  + I++A  +++GSIGVL Q 
Sbjct: 158 VHSYGLAASQLQRIRSTGATLTVAVDKVAASGGYMMACVGDRIISAPFAVIGSIGVLAQL 217

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P     L K  V  + + +   K   + F E          + ++ +Y  F   V+ +R 
Sbjct: 218 PNFHRLLKKNDVDFELLTAGKYKRTLTMFGENTDDGRAKFVEDLEDTYDLFKDFVAINR- 276

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P      ++ G IW G  A    L+D +   +     L     +    +I+        
Sbjct: 277 -PVVDIDSVATGEIWYGQRAVDQNLVDELSTSD---AYLQTRLAETEAFEIRFVAKKS-- 330

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
            + +   ++  + +E T   + Q     L 
Sbjct: 331 -WQEKFGMAAGAGIERTFLRLWQQGASRLL 359


>gi|291045064|ref|ZP_06570772.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291011067|gb|EFE03064.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|317163613|gb|ADV07154.1| putative periplasmic protease [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 366

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 98/218 (44%), Gaps = 9/218 (4%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127
           +++ L SPGG  +        +++++ R   +T  V ++AAS GY+++C ++ IV+A  +
Sbjct: 155 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 214

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           ++GS+GV+ + P +   L K  + +  + +   K   +   E   K  Q  +  ++ ++ 
Sbjct: 215 IIGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 274

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F + VSE+R  P      ++ G  W G +A  + LID +   +++    +        +
Sbjct: 275 LFKQFVSENR--PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 326

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           ++ +    +         L   + +E     +   +  
Sbjct: 327 QVIEVKYQEKRSLIQRIGLQAEASVEKLFAKLVNRRAD 364


>gi|240016949|ref|ZP_04723489.1| putative periplasmic protease [Neisseria gonorrhoeae FA6140]
 gi|240117127|ref|ZP_04731189.1| putative periplasmic protease [Neisseria gonorrhoeae PID1]
 gi|268602813|ref|ZP_06136980.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268586944|gb|EEZ51620.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
          Length = 350

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 98/218 (44%), Gaps = 9/218 (4%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127
           +++ L SPGG  +        +++++ R   +T  V ++AAS GY+++C ++ IV+A  +
Sbjct: 139 VLIRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 198

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           ++GS+GV+ + P +   L K  + +  + +   K   +   E   K  Q  +  ++ ++ 
Sbjct: 199 IIGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 258

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F + VSE+R  P      ++ G  W G +A  + LID +   +++    +        +
Sbjct: 259 LFKQFVSENR--PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 310

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           ++ +    +         L   + +E     +   +  
Sbjct: 311 QVIEVKYQEKRSLIQRIGLQAEASVEKLFAKLVNRRAD 348


>gi|89898686|ref|YP_515796.1| periplasmic serine proteases IV [Chlamydophila felis Fe/C-56]
 gi|89332058|dbj|BAE81651.1| periplasmic serine proteases IV [Chlamydophila felis Fe/C-56]
          Length = 338

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 112/234 (47%), Gaps = 12/234 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQELIERIERISR-------DDSATALIVSLSSPGGSAY 81
             +  ++P +A + ++  I  ++     ++            D    +I+ +  PGG  +
Sbjct: 60  KDLGKDAPIIAVLEMKDVISSAKHTARILQDAITTLDSAPYKDRVKGIIIDMDCPGGEVF 119

Query: 82  AGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQY 138
                +  IQ  K R        V+ + AS GY ++CA++ I +  +SL+GS+GVL   Y
Sbjct: 120 EIARTYSVIQFWKQRTNCPIYVFVNGLCASGGYYVACAADKIYSTSSSLIGSVGVLSGPY 179

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             VK  L + GV    + +   KA  +P++E   K  ++ Q+V++  Y  FV +V  +R 
Sbjct: 180 FNVKEGLSRYGVQSDLLTAGKDKAPMNPYTEWTTKDREIRQEVINYLYGQFVDVVVTNRP 239

Query: 199 -IPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQSIRKIK 250
            +  DK + +   R+++  +A + G +DVV   +++V Q L +    ++  ++ 
Sbjct: 240 LLTKDKLVSVLGARLYSPEKALEEGYVDVVNVTKQQVIQDLVSDCKIENNYRVI 293


>gi|261379008|ref|ZP_05983581.1| peptidase, S49 family [Neisseria cinerea ATCC 14685]
 gi|269144540|gb|EEZ70958.1| peptidase, S49 family [Neisseria cinerea ATCC 14685]
          Length = 350

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 98/218 (44%), Gaps = 9/218 (4%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127
           +++ L SPGG  +        +++++ R   +T  V ++AAS GY+++C ++ IV+A  +
Sbjct: 139 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 198

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           ++GS+GV+ + P +   L K  + +  + +   K   +   E   K  Q  Q  ++ ++ 
Sbjct: 199 IIGSVGVVAEVPNIHRLLKKYDIDVDVMTAGEFKRTVTFMGENTEKGKQKFQQELEETHQ 258

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F + VSE+R  P      ++ G  W G +A ++ L+D +   +++    +        +
Sbjct: 259 LFKQFVSENR--PQLDIEKVATGEHWFGRQALELNLVDSISTSDDLLLKAFE------NK 310

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           +I +              L   + +E+        +  
Sbjct: 311 QIIEVKYQAKQSLIQRIGLQAEASVENLFAKFANRRAD 348


>gi|194097841|ref|YP_002000886.1| putative periplasmic protease [Neisseria gonorrhoeae NCCP11945]
 gi|193933131|gb|ACF28955.1| putative protease [Neisseria gonorrhoeae NCCP11945]
          Length = 368

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 98/218 (44%), Gaps = 9/218 (4%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127
           +++ L SPGG  +        +++++ R   +T  V ++AAS GY+++C ++ IV+A  +
Sbjct: 157 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 216

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           ++GS+GV+ + P +   L K  + +  + +   K   +   E   K  Q  +  ++ ++ 
Sbjct: 217 IIGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 276

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F + VSE+R  P      ++ G  W G +A  + LID +   +++    +        +
Sbjct: 277 LFKQFVSENR--PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 328

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           ++ +    +         L   + +E     +   +  
Sbjct: 329 QVIEVKYQEKRSLIQRIGLQAEASVEKLFAKLVNRRAD 366


>gi|54113939|gb|AAV29603.1| NT02FT1074 [synthetic construct]
          Length = 339

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 104/253 (41%), Gaps = 14/253 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAY 81
               +     +  I  +G I+ SQ      E+   +   + +D    +IV + SPGG   
Sbjct: 86  DKQDDKPKQKIFVINFKGDIDASQVENLRNEVSAILAVANTEDE---IIVRIDSPGGVVN 142

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPY 140
                   +++++     +T   +  A++G  +  A  + I+AA  ++VGSIGV+   P 
Sbjct: 143 GYGFAAAQLERIRQAGINLTVCIDQVAASGGYMMSAVAHKIIAAPFAIVGSIGVVGTIPN 202

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           ++  L+K G++++   S   K   +       +     +  ++S +  F + +   R  P
Sbjct: 203 IRELLEKNGINVEMHTSGEYKRTLTTVGVNTEEGRNKFKQDLESIHQLFKKHILVYR--P 260

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +A ++GL+D +   ++    L  L    ++ ++      +  + 
Sbjct: 261 SLDIDKVATGEYWFGKDALELGLVDKIQTYDDYLIDL--LKKQHNVYEVSYVIKKEKGFL 318

Query: 261 CDLKNLSISSLLE 273
               ++   ++  
Sbjct: 319 RSKFSMLKRAITN 331


>gi|329570276|gb|EGG52014.1| signal peptide peptidase SppA [Enterococcus faecalis TX1467]
          Length = 184

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/173 (31%), Positives = 86/173 (49%)

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
             P+ T     AAS GY IS  S+ I A E +  GSIGV+         L+KLGVS  + 
Sbjct: 8   DIPIYTAFKNTAASGGYYISAGSDKIFATEETTTGSIGVIISGLNYSGLLEKLGVSDATY 67

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215
           KS  +K   SP  + + +  +++Q+ V S+Y  FV +V++ RN+  +    L+DGRI+ G
Sbjct: 68  KSGELKDMMSPQHKPSEEEKKVIQEFVMSAYDRFVNIVAKGRNMDTNAVKELADGRIYDG 127

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
            +A + GL+D +G  E+   SL           I+  N   ++    L    +
Sbjct: 128 NQAVENGLVDQIGYSEDALDSLKKEKKLTDATVIEYKNDTTSFASSWLGKKLL 180


>gi|308389720|gb|ADO32040.1| putative secreted protease [Neisseria meningitidis alpha710]
 gi|325132727|gb|EGC55410.1| putative signal peptide peptidase SppA, 36K type [Neisseria
           meningitidis M6190]
          Length = 366

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 98/218 (44%), Gaps = 9/218 (4%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127
           +++ L SPGG  +        +++++ R   +T  V ++AAS GY+++C ++ IV+A  +
Sbjct: 155 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 214

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           +VGS+GV+ + P +   L K  + +  + +   K   +   E   K  Q  +  ++ ++ 
Sbjct: 215 IVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 274

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F + VSE+R  P      ++ G  W G +A  + LID +   +++    +        +
Sbjct: 275 LFKQFVSENR--PQLDIEEVATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 326

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           ++ +    +         L   + +E     +   +  
Sbjct: 327 QVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRAD 364


>gi|315297262|gb|EFU56542.1| putative signal peptide peptidase SppA [Escherichia coli MS 16-3]
          Length = 349

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 93  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINASDEVILSLME------GREVVNVRYMQRKRLIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349


>gi|326404357|ref|YP_004284439.1| putative peptidase S49 [Acidiphilium multivorum AIU301]
 gi|325051219|dbj|BAJ81557.1| putative peptidase S49 [Acidiphilium multivorum AIU301]
          Length = 265

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 98/255 (38%), Gaps = 15/255 (5%)

Query: 34  NSPHVARIAIRGQI------EDSQELIERIERISRDDS--ATALIVSLSSPGGSAYAGEA 85
           + P V  I + G I       + +     I+R           LI+++ SPGGS    + 
Sbjct: 8   SRPCVPVIRLAGLISPREGAVNLERFAPAIDRGFDLAKGGTKLLILAIESPGGSPVQSDL 67

Query: 86  IFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           I R I++        V+  + ++ AS GY I+CA + I A   S+VGSIGV+     +  
Sbjct: 68  IGRHIRRKAEETGVRVLAVIGDVGASGGYWIACAGDEIFANPMSIVGSIGVVGGGFGLHD 127

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            + + G+  + V +   K    PFS   P      Q ++D  +  F   V E R      
Sbjct: 128 LIRRFGIERRVVTAGANKLRNDPFSPERPGDAAFNQALLDDIHDAFKAWVRERRGAALKG 187

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              + DG    G+ AK  GLID  G    +       G      K     P + +    L
Sbjct: 188 DDTVFDGSYMLGSAAKARGLIDGFGDVRGLIT-----GRCGPRAKPVFLGPKRKFSLLRL 242

Query: 264 KNLSISSLLEDTIPL 278
              S    L + +  
Sbjct: 243 FGRSSLIELANAMEA 257


>gi|260598142|ref|YP_003210713.1| putative inner membrane peptidase [Cronobacter turicensis z3032]
 gi|260217319|emb|CBA31301.1| Probable protease sohB [Cronobacter turicensis z3032]
          Length = 349

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 109/267 (40%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYA 82
                   P +  +  +G I+  +  +  +       ++    A  +++ L SPGG  + 
Sbjct: 93  GEAAPAGKPTLYVLDFKGSIDAHE--VTALREEVTAVLAVAKPADEVLLRLESPGGVVHG 150

Query: 83  GEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  +Q+++ R+      V ++AAS GY+++C +N IVAA  +++GSIGV+ Q P  
Sbjct: 151 YGLAASQLQRLRERQIPLTIAVDKVAASGGYMMACVANKIVAAPFAIIGSIGVVAQIPNF 210

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L +  + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P 
Sbjct: 211 NRLLKRNDIDIELHTAGQYKRTLTLLGENTEEGREKFREDLNETHQLFKEFVHSMR--PS 268

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +A++ GL+D +   +++  +          R +      +     
Sbjct: 269 LDIEAVATGEHWYGVQAQEKGLVDDISTSDDLIIARMQ------ERDVVSLRYLQRKRLM 322

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D    S +  L+  +    Q   + L 
Sbjct: 323 DRFTGSAAQSLDRLLLRWWQRGQKPLL 349


>gi|254670000|emb|CBA04724.1| putative secreted protease [Neisseria meningitidis alpha153]
          Length = 366

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 98/218 (44%), Gaps = 9/218 (4%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127
           +++ L SPGG  +        +++++ R   +T  V ++AAS GY+++C ++ IV+A  +
Sbjct: 155 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 214

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           +VGS+GV+ + P +   L K  + +  + +   K   +   E   K  Q  +  ++ ++ 
Sbjct: 215 IVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 274

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F + VSE+R  P      ++ G  W G +A  + LID +   +++    +        +
Sbjct: 275 LFKQFVSENR--PQLDIEEVATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 326

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           ++ +    +         L   + +E     +   +  
Sbjct: 327 QVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRAD 364


>gi|269102960|ref|ZP_06155657.1| putative sohB protein peptidase U7 family [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162858|gb|EEZ41354.1| putative sohB protein peptidase U7 family [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 336

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 98/226 (43%), Gaps = 12/226 (5%)

Query: 40  RIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
            I  +G I+  +      E+   +      D    +++ L + GG  +        + ++
Sbjct: 92  VIDFKGGIDAREVSALRQEVTAILAVAQEGDE---VLLRLETGGGMVHDYGLASSQLDRL 148

Query: 94  KNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           K     +   V ++AAS GY+++C ++ I++A  ++VGSIGV+ Q P     L K  +  
Sbjct: 149 KAAGLKLTISVDKVAASGGYMMACVADKIISAPFAIVGSIGVIAQIPNFNKVLKKNDIEF 208

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
           + + +   K   + F E   KA +  +  ++ ++  F   ++  R  P      ++ G  
Sbjct: 209 EQITAGEFKRTLTMFGENTDKAREKFKLEIEETHGLFKDFIANHR--PELDLNKVATGEH 266

Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           W G +A ++GL+D +G  ++   +         ++ ++     +  
Sbjct: 267 WFGQQAFELGLVDAIGTSDDFITAACKERKVLGVKYVQRKKLAEKL 312


>gi|322513452|ref|ZP_08066564.1| protease SohB [Actinobacillus ureae ATCC 25976]
 gi|322120743|gb|EFX92624.1| protease SohB [Actinobacillus ureae ATCC 25976]
          Length = 350

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 114/261 (43%), Gaps = 18/261 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSA 80
                E     +  +   G ++ S      +E+   +     +D    +++ L SPGG  
Sbjct: 93  GGEKTEAEKSRLFVLKFNGDVQASTVNALAKEISAVLSLAKAEDE---VLLKLESPGGVV 149

Query: 81  YAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +        +Q++++    +T  V ++AAS GY+++C +N IV+A  +++GS+GV+ Q P
Sbjct: 150 HGYGLAASQLQRLRDHNIPLTVAVDKVAASGGYMMACVANKIVSAPFAIIGSVGVVAQVP 209

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            +   L K  + +  + +   K   +   E   K  Q  Q  ++ ++  F + V+++R  
Sbjct: 210 NIHRLLKKHDIDVDVMTAGEYKRTVTLVGENTEKGKQKFQQELEETHELFKQFVAQNR-- 267

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           P  +   ++ G  W G +A  + L+D +   +++  +          +++ + +  +   
Sbjct: 268 PQLEIEKIATGEHWFGKQALALNLVDEISTSDDLLLNAVK------EKEVIELSFKEKKN 321

Query: 260 FCDLKNLSISSLLEDTIPLMK 280
                 + +   +E+ I  + 
Sbjct: 322 LTQRLGVQMEQSVENIIAKLL 342


>gi|253688400|ref|YP_003017590.1| Peptidase S49 domain protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251754978|gb|ACT13054.1| Peptidase S49 domain protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 348

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 105/247 (42%), Gaps = 12/247 (4%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYA 82
           +     +   P +  +   G ++  +   L E I   ++       +++ L SPGG  + 
Sbjct: 90  AKRGEEKSVKPCLYVLDFNGSMDAGEVSSLREEISAVLAVAKPQDEVLLRLESPGGVVHG 149

Query: 83  GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  +Q+++     +T  V ++AAS GY+++C ++ IVAA  ++VGSIGV+ Q P  
Sbjct: 150 YGLAASQLQRLRQGGVRLTVAVDKVAASGGYMMACVADRIVAAPFAIVGSIGVVAQIPNF 209

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L    + ++   +   K   + F E   +  +  ++ ++ ++  F   V + R  P 
Sbjct: 210 HRLLKNKDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNVTHTLFKDFVQQMR--PS 267

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE-VWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                ++ G  W G +AK +GLID +G  ++ +   + +  V         +   K    
Sbjct: 268 LDIDSVATGEHWFGTQAKDLGLIDAIGTSDDLLIAEMTSHEVLS-----VRYTRRKRLLD 322

Query: 261 CDLKNLS 267
               +  
Sbjct: 323 RLTGSAG 329


>gi|163784834|ref|ZP_02179617.1| proteinase IV [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879894|gb|EDP73615.1| proteinase IV [Hydrogenivirga sp. 128-5-R1-1]
          Length = 172

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 76/162 (46%)

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           IS A+  I A   ++ GSIGV+ Q+  +   ++K+GV I ++KS   K    P  ++ P+
Sbjct: 1   ISAAATEIFANPGTITGSIGVIVQHMDLTNLMNKVGVKITNIKSGKNKDILYPNHKLKPE 60

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
             ++++  V   Y  F+  V + R I  +K    +DGR+++G +A K+GL+D +G  ++ 
Sbjct: 61  EAKLIKQTVLDVYEQFLDAVVKYRKIDKEKLRPYADGRVFSGRQALKLGLVDKLGNLQDA 120

Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
                 L   +    +      +      L    I   L D 
Sbjct: 121 VDEARKLIGKEGKSAVVIKLGRQKPLLEKLLGAKIDLNLLDL 162


>gi|145637711|ref|ZP_01793364.1| predicted inner membrane peptidase [Haemophilus influenzae PittHH]
 gi|145269113|gb|EDK09063.1| predicted inner membrane peptidase [Haemophilus influenzae PittHH]
          Length = 323

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 102/222 (45%), Gaps = 13/222 (5%)

Query: 38  VARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
           V  +   G I  S+      E+   +     +D    +++ L SPGG  +        + 
Sbjct: 106 VYVLDFCGDISASETTALREEISAILNVAKSEDE---VLLRLESPGGIVHNYGFAASQLS 162

Query: 92  KVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++K +   +T  V ++AAS GY+++C ++ IV+A  +++GSIGV+ Q P V   L K  V
Sbjct: 163 RLKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDV 222

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
            +  + +   K   +   E   K  Q  Q  ++ ++  F + VS++R         ++ G
Sbjct: 223 DVDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATG 280

Query: 211 RIWTGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKD 251
             W G +A  + L+D +   +++  + +    V     ++K+
Sbjct: 281 EHWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKN 322


>gi|290470|gb|AAA24639.1| sohB [Escherichia coli str. K-12 substr. W3110]
          Length = 349

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84
                D+ P V  +  +G ++  +   L E I   ++       +++ L SPGG  +   
Sbjct: 93  GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P   
Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +   +EV  SL         R++ +    +     D 
Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINASDEVILSLME------GREVVNVRYMQRKRLIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   +  +    Q   + L 
Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349


>gi|307109943|gb|EFN58180.1| hypothetical protein CHLNCDRAFT_142011 [Chlorella variabilis]
          Length = 479

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 93/230 (40%), Gaps = 18/230 (7%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSA---------TALI 70
           +  +S     + N   +  + + G ++         +  R+   D             L 
Sbjct: 152 LARWSIMGRKDFNEALITVVKLSGVLQAFTGPARAPQARRLLYLDRVEKWFARAFTKGL- 210

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSL 128
               +  GS    E IF  I+++      PV T   ++AAS GY + CA +   A ETSL
Sbjct: 211 --KPAACGSPVQSELIFGLIRRLSKSTGIPVYTFAEDVAASGGYWLMCAGDKSYALETSL 268

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
           VGS+GV+           KLGV  +   +   K +  PF  V P     ++D++D  +  
Sbjct: 269 VGSVGVISATFGATEAAKKLGVERRVFTAGEAKMQLDPFLPVQPDQEARLRDIMDDLHQA 328

Query: 189 FVRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           F   V  SR           L  GR WTG +A K+GL+D +G    V Q 
Sbjct: 329 FKERVRGSRGERLAAGRDDELFSGRAWTGRQALKLGLVDGLGDMRSVMQE 378


>gi|110668686|ref|YP_658497.1| protease IV; endopeptidase IV; signal peptide peptidase
           [Haloquadratum walsbyi DSM 16790]
 gi|109626433|emb|CAJ52894.1| Protease IV; endopeptidase IV; probable signal peptide peptidase
           [Haloquadratum walsbyi DSM 16790]
          Length = 328

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 88/241 (36%), Gaps = 14/241 (5%)

Query: 25  FSWSSHVEDNSPHVARIAIRG--QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
            S S   E     VA I  RG     +   + E +     + S  A+++ + SPGG   A
Sbjct: 36  VSGSGPDEGGESSVAVITFRGGTTSGNVAAVTESLREARTNGSVDAIVLRIDSPGGPVDA 95

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            E  + A+ +  ++ PV+  V   AAS GY      + IV   +S VGSIGV+ Q P   
Sbjct: 96  SEEFYLAVNRTASQMPVVAYVEGTAASGGYFGIAPVDEIVVKPSSTVGSIGVIVQAPL-S 154

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
              +        ++S P KA+ +            +++ ++     FV  + + R     
Sbjct: 155 AVENIENQRQVFIRSGPDKAQIT---------RDGLRENLELLQKAFVDTIIKHRGDELS 205

Query: 203 KTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG-VDQSIRKIKDWNPPKNYWF 260
            +   ++ G+ + G  A   G  D +G      +                 +   +    
Sbjct: 206 LSRTEVATGQTFLGPRAVDNGFADQIGDLNVAIEEAAGRADGISGDEYNVYYKSSRAQQL 265

Query: 261 C 261
            
Sbjct: 266 N 266


>gi|59801605|ref|YP_208317.1| putative periplasmic protease [Neisseria gonorrhoeae FA 1090]
 gi|59718500|gb|AAW89905.1| putative serine protease [Neisseria gonorrhoeae FA 1090]
          Length = 350

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 98/218 (44%), Gaps = 9/218 (4%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127
           +++ L SPGG  +        +++++ R   +T  V ++AAS GY+++C ++ IV+A  +
Sbjct: 139 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 198

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           ++GS+GV+ + P +   L K  + +  + +   K   +   E   K  Q  +  ++ ++ 
Sbjct: 199 VIGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 258

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F + VSE+R  P      ++ G  W G +A  + LID +   +++    +        +
Sbjct: 259 LFKQFVSENR--PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 310

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           ++ +    +         L   + +E     +   +  
Sbjct: 311 QVIEVKYQEKRSLIQRIGLQAEASVEKLFAKLVNRRAD 348


>gi|229220652|ref|YP_050383.2| putative periplasmic protease [Pectobacterium atrosepticum
           SCRI1043]
          Length = 348

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/267 (20%), Positives = 110/267 (41%), Gaps = 12/267 (4%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATA-LIVSLSSPGGSAYA 82
           +     +   P +  +   G ++  +   L E I  +         +++ L SPGG  + 
Sbjct: 90  AKRGEEKSVKPCLYVLDFNGSMDAGEVSSLREEISAVLAVAKPKDEVLLRLESPGGVVHG 149

Query: 83  GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  +Q+++     +T  V ++AAS GY+++C ++ IVAA  ++VGSIGV+ Q P  
Sbjct: 150 YGLAASQLQRLRQGGVRLTVAVDKVAASGGYMMACVADHIVAAPFAIVGSIGVVAQIPNF 209

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L    + ++   +   K   + F E   +  +  ++ ++ ++  F   V + R  P 
Sbjct: 210 HRLLKNKDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNVTHTLFKDFVQQMR--PS 267

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +AK + LID +G  +++      L  + +  ++      +     
Sbjct: 268 LDIDSVATGEHWFGTQAKDLKLIDAIGTSDDL------LIGEIANHEVLSVRYTRRKRLL 321

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D    S     E  +    Q   + L 
Sbjct: 322 DRLTGSAGDTAERLMLRWWQRGSKPLL 348


>gi|260459549|ref|ZP_05807803.1| peptidase S49 [Mesorhizobium opportunistum WSM2075]
 gi|259034351|gb|EEW35608.1| peptidase S49 [Mesorhizobium opportunistum WSM2075]
          Length = 302

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 88/226 (38%), Gaps = 23/226 (10%)

Query: 37  HVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYA 82
            VA + I G I                  +      +++ D   +A+++ + SPGG    
Sbjct: 60  SVAVLRIVGPILPRAEAVVDVSQPAALMTDFRRAFSQVANDAGVSAIVIDIDSPGGRVDL 119

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAA-SAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  I+  +     I  V    A SA Y I+ A++ IV + +  VGSIGV   +  +
Sbjct: 120 VPETAAMIRSARRDGRPIVAVANTIALSAAYWIASAADEIVVSPSGAVGSIGVYTVHEDM 179

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L+  GV +  + + P K E +PF  ++   +  +   V + Y  F   V++ R +P 
Sbjct: 180 SAALEAEGVKVTMISAGPRKVEGNPFQPLDEAGLASLLGNVTTFYGMFAGDVAKGRGVPV 239

Query: 202 DKTLV--------LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
                           GR     EA K+G++D V   EE    L  
Sbjct: 240 SVVKADPESSDKNFGGGRAVLAQEALKLGMVDRVATLEETVARLAK 285


>gi|307310225|ref|ZP_07589874.1| peptidase S49 [Sinorhizobium meliloti BL225C]
 gi|306899777|gb|EFN30402.1| peptidase S49 [Sinorhizobium meliloti BL225C]
          Length = 301

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 14/215 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
           P +A I I G              +   + +  ++      D   A++  + S GG    
Sbjct: 77  PGIALIEIEGSLVNKGKWIGKSCGMTSYEAIGVQVRDCIERDDIKAVVFEVDSYGGEVTG 136

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I ++   KP I  + + A SAGYL++     +V  +T + GSIGV+  +  + 
Sbjct: 137 AFDCAEQIFELSQLKPTIAVLTDHACSAGYLLASPCRQLVIPQTGICGSIGVISMHVDMS 196

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
            +L K G+ +  +K+   KA+ +P+  +    +Q     ++     F   V+  R     
Sbjct: 197 AWLAKEGLKVTILKAGEHKADFNPYEAIPDDVLQQELAELEELRVEFAATVARYRAGRLT 256

Query: 203 KTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           +   L ++ R++ G +A   GL+D V    +V ++
Sbjct: 257 QQSALATEARVYRGQKAVDAGLVDAVARPSQVLEA 291


>gi|330808706|ref|YP_004353168.1| peptidase [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
 gi|327376814|gb|AEA68164.1| putative peptidase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 343

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 104/252 (41%), Gaps = 12/252 (4%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAGEA 85
                  P V  +   G I+ S  + L   I  +    +    +++ L S GG  ++   
Sbjct: 87  KDKPAAKPRVFVLDFDGDIKASATESLRHEITALLTLATPKDEVVLRLESGGGMVHSYGL 146

Query: 86  IFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
               + +++     +T    ++AAS GY+++C    I++A  +++GSIGV+ Q P V   
Sbjct: 147 ASSQLARIRQAGVPLTVCIDKVAASGGYMMACIGEKIISAPFAILGSIGVVAQLPNVNRL 206

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K  +  + + +   K   + F E   K  +  Q+ +D ++  F   VS  R  P    
Sbjct: 207 LKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLDITHELFKNFVSNYR--PQLAI 264

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             ++ G +W G  A+  GL+D +   +E    L        +  +   +  +     +  
Sbjct: 265 DEVATGEVWLGVAAQGKGLVDELKTSDE---YLAERAKGAELYHL---HYAERKSLQERI 318

Query: 265 NLSISSLLEDTI 276
            ++ S  ++  +
Sbjct: 319 GMAASGSVDRVL 330


>gi|88800083|ref|ZP_01115653.1| probable protease [Reinekea sp. MED297]
 gi|88777209|gb|EAR08414.1| probable protease [Reinekea sp. MED297]
          Length = 334

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 113/252 (44%), Gaps = 14/252 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYAG 83
             VE + P    +  +G I+ SQ  +E + +     ++       +I+++ SPGGS    
Sbjct: 82  DKVESDRPKAYALKFKGDIQASQ--VEALRQEVTAILTTAKEGEEVIITIESPGGSVSGY 139

Query: 84  EAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                 + ++K++   +T    ++AAS GY+++C ++ I+AA  S+VGSIGVL Q P + 
Sbjct: 140 GLAASQLLRLKDKGLKLTACVDQVAASGGYMMACVADRILAAPFSIVGSIGVLSQVPNIH 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
            FL +  V +  + +   KA  +   E   +  Q   D +++ +  F  LV   R     
Sbjct: 200 RFLKRFDVDVDVLTAGKHKAPITFMGENTEEGKQKHVDDLNAIHQRFKALVKLHREEL-- 257

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               +S+G  W   +A +  L+D +   +     L +L     + +++ W P K+     
Sbjct: 258 NIDDVSEGDFWLAEDALQRKLVDELMTSDS---YLMSLCESTDVYRVR-WQPHKSLEQRI 313

Query: 263 LKNLSISSLLED 274
               +    + +
Sbjct: 314 KGASAAIMAVVE 325


>gi|114327168|ref|YP_744325.1| signal peptide peptidase sppA [Granulibacter bethesdensis CGDNIH1]
 gi|114315342|gb|ABI61402.1| signal peptide peptidase sppA [Granulibacter bethesdensis CGDNIH1]
          Length = 270

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 103/250 (41%), Gaps = 9/250 (3%)

Query: 38  VARIAIRGQIE-----DSQELIERIERISRDDSATA-LIVSLSSPGGSAYAGEAIFRAIQ 91
           +  + ++G +        + +   I + +        LI+S+ SPGGS    + I   I+
Sbjct: 20  IPVLELKGILSRRGPLSFETVEPAIRKAAALAEKRGALILSIDSPGGSPVQSDQIAALIR 79

Query: 92  KVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           +    K       + E+ AS GY ++CA++ I+A+  S+VGSIGV+     +   +++LG
Sbjct: 80  REAEEKSFRVYAVIQEVGASGGYWLACAADEIMASPMSIVGSIGVVGGGFGLNRLIERLG 139

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLS 208
           +  +   +   K    PF    P+ V  +  +++  +  F   V + R          + 
Sbjct: 140 IDRRLHTAGQNKRRGDPFLPEKPEDVAFIAGLMEDIHASFKDWVRQRRGARLTSDESAIF 199

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
           DG    G +A  +GLID +     + + L   G    + + +      +          +
Sbjct: 200 DGGYMLGRQAVTLGLIDGLTDLTALVEQLGGKGAQPKLFRPRLRRGLLSRLPSLSAGALL 259

Query: 269 SSLLEDTIPL 278
            ++ E  + L
Sbjct: 260 DAMEERRLDL 269


>gi|296102097|ref|YP_003612243.1| putative periplasmic protease [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295056556|gb|ADF61294.1| putative periplasmic protease [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 348

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 108/248 (43%), Gaps = 16/248 (6%)

Query: 30  HVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
             E + P V  +  +G ++        +E+   +      D    ++V L SPGG  +  
Sbjct: 94  PEETSIPRVYVLDFKGSMDAHEVSSLREEVTAVLAVAKPQDQ---VVVRLESPGGVVHGY 150

Query: 84  EAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                 +Q+++ ++  +T  V ++AAS GY+++C ++ IVAA  S++GSIGV+ Q P   
Sbjct: 151 GLAASQLQRLREKQIPLTVAVDKVAASGGYMMACVADKIVAAPFSIIGSIGVVAQIPNFN 210

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
            FL    + I+   +   K   +   E   +  Q  ++ ++ ++H F   V   R  P  
Sbjct: 211 RFLKSKEIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKDFV--HRMRPAL 268

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               ++ G  W G +A + GL+D VG  +++  +L              +   K      
Sbjct: 269 DIDQVATGEHWYGTQALEKGLVDEVGTSDDLLLNLMEGRELVG----VRFTQRKRLLDRF 324

Query: 263 LKNLSISS 270
             + + S+
Sbjct: 325 TNSAAESA 332


>gi|254672356|emb|CBA05569.1| putative secreted protease [Neisseria meningitidis alpha275]
          Length = 366

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 98/218 (44%), Gaps = 9/218 (4%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127
           +++ L SPGG  +        +++++ R   +T  V ++AAS GY+++C ++ IV+A  +
Sbjct: 155 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 214

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           +VGS+GV+ + P +   L K  + +  + +   K   +   E   K  Q  +  ++ ++ 
Sbjct: 215 IVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 274

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F + VSE+R  P      ++ G  W G +A  + LID +   +++    +        +
Sbjct: 275 LFKQFVSENR--PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 326

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           ++ +    +         L   + +E     +   +  
Sbjct: 327 QVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRAD 364


>gi|49611742|emb|CAG75191.1| protease [Pectobacterium atrosepticum SCRI1043]
          Length = 350

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/267 (20%), Positives = 110/267 (41%), Gaps = 12/267 (4%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATA-LIVSLSSPGGSAYA 82
           +     +   P +  +   G ++  +   L E I  +         +++ L SPGG  + 
Sbjct: 92  AKRGEEKSVKPCLYVLDFNGSMDAGEVSSLREEISAVLAVAKPKDEVLLRLESPGGVVHG 151

Query: 83  GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  +Q+++     +T  V ++AAS GY+++C ++ IVAA  ++VGSIGV+ Q P  
Sbjct: 152 YGLAASQLQRLRQGGVRLTVAVDKVAASGGYMMACVADHIVAAPFAIVGSIGVVAQIPNF 211

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L    + ++   +   K   + F E   +  +  ++ ++ ++  F   V + R  P 
Sbjct: 212 HRLLKNKDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNVTHTLFKDFVQQMR--PS 269

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +AK + LID +G  +++      L  + +  ++      +     
Sbjct: 270 LDIDSVATGEHWFGTQAKDLKLIDAIGTSDDL------LIGEIANHEVLSVRYTRRKRLL 323

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D    S     E  +    Q   + L 
Sbjct: 324 DRLTGSAGDTAERLMLRWWQRGSKPLL 350


>gi|293399691|ref|ZP_06643843.1| serine protease SohB [Neisseria gonorrhoeae F62]
 gi|291609942|gb|EFF39065.1| serine protease SohB [Neisseria gonorrhoeae F62]
          Length = 359

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 98/218 (44%), Gaps = 9/218 (4%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127
           +++ L SPGG  +        +++++ R   +T  V ++AAS GY+++C ++ IV+A  +
Sbjct: 148 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 207

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           ++GS+GV+ + P +   L K  + +  + +   K   +   E   K  Q  +  ++ ++ 
Sbjct: 208 VIGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 267

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F + VSE+R  P      ++ G  W G +A  + LID +   +++    +        +
Sbjct: 268 LFKQFVSENR--PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 319

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           ++ +    +         L   + +E     +   +  
Sbjct: 320 QVIEVKYQEKRSLIQRIGLQAEASVEKLFAKLVNRRAD 357


>gi|62184771|ref|YP_219556.1| putative exported protease [Chlamydophila abortus S26/3]
 gi|62147838|emb|CAH63584.1| putative exported protease [Chlamydophila abortus S26/3]
          Length = 335

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 113/234 (48%), Gaps = 12/234 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQELIERIERISR-------DDSATALIVSLSSPGGSAY 81
             V  ++P +A + ++  I  S+   + I+            D    +I+ +  PGG  +
Sbjct: 57  KDVGKDAPIIAVLEMKDVIASSKHTAKIIQEAITTLDSPPYKDRVKGIIIDMDCPGGEVF 116

Query: 82  AGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQY 138
               ++  IQ  K R        V+ + AS GY ++CA++ I +  +SL+GSIGVL   Y
Sbjct: 117 EISRVYSTIQFWKQRTQCPVYVFVNGLCASGGYYVACAADKIYSTSSSLIGSIGVLSGPY 176

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             VK  L + GV    + +   KA  +P++E   K  ++ Q+++D  Y  FV +V  +R 
Sbjct: 177 FNVKEGLSRYGVQSDLLIAGKDKAPMNPYTEWTAKDREIRQEIIDYLYGQFVDVVVTNRP 236

Query: 199 -IPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQSIRKIK 250
            +  DK + +   R+++  +A + G IDV    +++V Q L A    ++  ++ 
Sbjct: 237 LLTKDKLVSVLGARLYSPEKALEEGYIDVTNVTKQQVLQDLVADCKIENNYRVI 290


>gi|262376071|ref|ZP_06069302.1| signal peptide peptidase SppA, 36K type [Acinetobacter lwoffii
           SH145]
 gi|262309165|gb|EEY90297.1| signal peptide peptidase SppA, 36K type [Acinetobacter lwoffii
           SH145]
          Length = 320

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 105/261 (40%), Gaps = 13/261 (4%)

Query: 32  EDNSPHVARIAIRGQIEDS--QELIERIERISRDDSA--TALIVSLSSPGGSAYAGEAIF 87
           +  +  +  +  +G +  S  + L E I  I     A    ++V L SPGG  +      
Sbjct: 53  KKTNQKIYVLDFKGDMAASAVEGLREEITLILATAKAGRDRVVVRLESPGGMVHGYGLAA 112

Query: 88  RAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
             + +++     +   V ++AAS GY+++C +N I++A  ++VGSIGV+ Q P     L 
Sbjct: 113 AQLVRLREAGFHLTICVDKVAASGGYMMACIANEIISAPFAIVGSIGVVAQVPNFNRLLK 172

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
              +  +   +   K   + F E   +     ++ +  ++  F   V + R  P      
Sbjct: 173 DNKIDFELYTAGQYKRTVTMFGENTEEGKAKFEEELQQTHALFKHFVEKYR--PQLNIEK 230

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           ++ G  W G +A  + L+D +   +E   +L           I      K     +   L
Sbjct: 231 VATGEHWYGRDALDLNLVDKLQTSDEYLLNLLTQH------DIYSIQTRKKPTLGEKLGL 284

Query: 267 SISSLLEDTIPLMKQTKVQGL 287
             + + +  IP +    ++ L
Sbjct: 285 QAAQIADSLIPTVMNNVMESL 305


>gi|297250560|ref|ZP_06864551.2| peptidase, S49 family [Neisseria polysaccharea ATCC 43768]
 gi|296838605|gb|EFH22543.1| peptidase, S49 family [Neisseria polysaccharea ATCC 43768]
          Length = 366

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 98/218 (44%), Gaps = 9/218 (4%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127
           +++ L SPGG  +        +++++ R   +T  V ++AAS GY+++C ++ IV+A  +
Sbjct: 155 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 214

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           +VGS+GV+ + P +   L K  + +  + +   K   +   E   K  Q  +  ++ ++ 
Sbjct: 215 IVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 274

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F + VSE+R  P      ++ G  W G +A  + LID +   +++    +        +
Sbjct: 275 LFKQFVSENR--PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 326

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           ++ +    +         L   + +E     +   +  
Sbjct: 327 QVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRAD 364


>gi|29839895|ref|NP_829001.1| protease IV, putative [Chlamydophila caviae GPIC]
 gi|29834242|gb|AAP04879.1| protease IV, putative [Chlamydophila caviae GPIC]
          Length = 332

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 132/294 (44%), Gaps = 24/294 (8%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNS----------PHVARIAIRGQIEDS 50
           +      +    ++L  V L+        ++ +            P +A + ++  I  S
Sbjct: 16  LGLSFGVVLAFSIILGFVALSSGGGIQFVNMPNAKGEIKDLGKEAPIIAVLEMKDVIASS 75

Query: 51  QELIERIERI--SRDD-----SATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVIT 101
           +   + I+    + D          LI+ +  PGG  +    ++  I+  K   + PV  
Sbjct: 76  RHTEKVIQEAIIALDSAPYKGRVKGLIIDMDCPGGEVFEIARVYSTIKFWKQCTKCPVYV 135

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYPYVKPFLDKLGVSIKSVKSSPM 160
            V+ + AS GY ++CA++ I +  +SL+GS+GVL   Y  VK  L + GV    + S   
Sbjct: 136 FVNGLCASGGYYVACAADKIYSTSSSLIGSVGVLSGPYFNVKEGLSRHGVQSDLLISGKD 195

Query: 161 KAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN-IPYDKTLVLSDGRIWTGAEAK 219
           KA  +P++E   K  ++ Q+++D  Y  FV +V  +R  +  +K + +   R+++  +A 
Sbjct: 196 KAPMNPYTEWTAKDREIRQEIIDYLYGQFVDIVVTNRPLLTKEKLVGVLGARLYSPEKAL 255

Query: 220 KVGLIDVV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
           + G IDVV   +++V + L A    ++  ++       + W     + + +S L
Sbjct: 256 ETGYIDVVNATKQQVLEDLVAACDIENNYRVIGLG--SDGWLKKFMSSAANSPL 307


>gi|90021661|ref|YP_527488.1| putative periplasmic protease [Saccharophagus degradans 2-40]
 gi|89951261|gb|ABD81276.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Saccharophagus
           degradans 2-40]
          Length = 365

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 110/260 (42%), Gaps = 16/260 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ-----ELIERIERISRDDSATALIVSLSSPGGSAYA 82
           +    +  P V      G I+ S+     E+I  I  I++   +  ++V L SPGG  + 
Sbjct: 108 ADSNTEAKPRVFVTHFDGDIKASETQELREVITAILSIAK--PSDEVVVCLESPGGMVHG 165

Query: 83  GEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + ++  +   +T    ++AAS GY+++C +N IVAA  +++GSIGV+ Q P  
Sbjct: 166 YGLAASQLARITEKNIPLTVCVDKVAASGGYMMACVANKIVAAPFAVIGSIGVVAQIPNF 225

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  V  + + +   K   + F E   K  Q   + ++ ++  F   + + R    
Sbjct: 226 HRLLKKHDVDYEMLTAGEYKRTLTMFGENTEKGRQKFVEDLEETHDLFKDFIRQHR--SV 283

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G IW G +A +  LID V   +     L+     +    + + N        
Sbjct: 284 VDVDKVATGEIWFGTKALEEKLIDAVQTSD---AYLFDR---KDSADLFEINYVHKRTVM 337

Query: 262 DLKNLSISSLLEDTIPLMKQ 281
           +   ++  + LE  I  + Q
Sbjct: 338 EKLGINAEASLERVIGKLWQ 357


>gi|304386997|ref|ZP_07369255.1| protease SohB [Neisseria meningitidis ATCC 13091]
 gi|304338954|gb|EFM05050.1| protease SohB [Neisseria meningitidis ATCC 13091]
          Length = 366

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 97/218 (44%), Gaps = 9/218 (4%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127
           +++ L SPGG  +        +++++ R   +T  V ++AAS GY+++C ++ I +A  +
Sbjct: 155 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIASAPFA 214

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           +VGS+GV+ + P +   L K  + +  + +   K   +   E   K  Q  +  ++ ++ 
Sbjct: 215 IVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 274

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F + VSE+R  P      ++ G  W G +A  + LID +   +++    +        +
Sbjct: 275 LFKQFVSENR--PQLDIEEVATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 326

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           ++ +    +         L   + +E     +   +  
Sbjct: 327 QVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRAD 364


>gi|229520509|ref|ZP_04409934.1| SohB protein peptidase U7 family [Vibrio cholerae TM 11079-80]
 gi|229342607|gb|EEO07600.1| SohB protein peptidase U7 family [Vibrio cholerae TM 11079-80]
          Length = 356

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 107/267 (40%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
                   PH+  +   G I        +E +  I  +++      +++ L + GG  + 
Sbjct: 100 GELESKRDPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 157

Query: 83  GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P  
Sbjct: 158 YGLASSQLDRLKAAGLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 217

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  +  + + +   K   + F E   KA +  +  ++ ++  F   + E R  P 
Sbjct: 218 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHQLFKDFIREHR--PA 275

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +AK +GL+D +   +++  +            +  +   K     
Sbjct: 276 LDLDKVATGEHWFGTQAKALGLVDEIQTSDDLIVAACK----SKTVLLLRYTQKKK--LA 329

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D          ++ +  +     + L 
Sbjct: 330 DKLAGVAGDAADNVLLKLFSRGQRPLV 356


>gi|110834091|ref|YP_692950.1| putative periplasmic protease [Alcanivorax borkumensis SK2]
 gi|110647202|emb|CAL16678.1| putative protease sohB [Alcanivorax borkumensis SK2]
          Length = 350

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 116/257 (45%), Gaps = 18/257 (7%)

Query: 36  PHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
           P +  +   G ++ S       E+   ++  ++DD    ++V L SPGG  ++       
Sbjct: 101 PRLFVLDFNGDVQASDVDHMRREITAILQVATQDDE---VLVRLESPGGLVHSYGLASSQ 157

Query: 90  IQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
           +++++N+   +T  V ++AAS GY+++C ++ IVAA  +++GSIGV+ Q P     L K 
Sbjct: 158 LRRIRNQGIKLTVAVDQVAASGGYMMACIADRIVAAPFAIIGSIGVVAQIPNFHRLLKKN 217

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
            + ++ + +   K   +   E   K     Q+ ++ ++  F   V ++R         ++
Sbjct: 218 DIDVELMTAGEYKRTMTMLGENTEKGRAKFQEELEETHQLFKGFVRDNR--RGLDLDKVA 275

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
            G  W G++AK++GL+D +   +E    L  +  D     +  W   +     +    S+
Sbjct: 276 TGEHWFGSQAKELGLVDEIMTSDE----LLQVRKDSQTLYLVQWEAKRK--LGEKLGFSL 329

Query: 269 SSLLEDTIPLMKQTKVQ 285
            ++    +        Q
Sbjct: 330 EAMAHRVLEKFWHRGSQ 346


>gi|307320186|ref|ZP_07599606.1| peptidase S49 [Sinorhizobium meliloti AK83]
 gi|306894232|gb|EFN24998.1| peptidase S49 [Sinorhizobium meliloti AK83]
          Length = 301

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 89/213 (41%), Gaps = 14/213 (6%)

Query: 38  VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           +A I I G              +   + +  ++      D   A++  + S GG      
Sbjct: 79  IALIEIEGSLVNKGKWIGKSCGMTSYEGISAQVRDCIDRDDIKAVVFEVDSYGGEVTGAF 138

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
                I ++   KP I  + + A SAGYL++     +V  +T + GSIGV+  +  +  +
Sbjct: 139 DCAEQIFELSQVKPTIAVLTDHACSAGYLLASPCRQLVIPQTGICGSIGVISMHVDMSAW 198

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K G+ +  +K+   KA+ +P+  +    +Q     ++     F   V+  R     + 
Sbjct: 199 LAKEGLKVTILKAGEHKADFNPYEAIPDDVLQQELAELEELRVEFAATVARYRAGRLTQQ 258

Query: 205 LVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
             L ++ R++ G +A   GL D V    +V ++
Sbjct: 259 SALATEARVYRGQKAVDAGLADAVARPSQVLEA 291


>gi|218709038|ref|YP_002416659.1| putative periplasmic protease [Vibrio splendidus LGP32]
 gi|218322057|emb|CAV18116.1| sohB protein, peptidase U7 family [Vibrio splendidus LGP32]
          Length = 355

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 112/263 (42%), Gaps = 17/263 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
                   PH+  +   G I+        +E+   +      D    +++ L S GG  +
Sbjct: 99  GELDSKREPHLFVLDFNGSIDAKEVASLREEVTAVLAVAREGDE---VLLKLESGGGMVH 155

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P 
Sbjct: 156 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIAQLPN 215

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E + KA +  ++ ++ ++  F   + + R  P
Sbjct: 216 FNKLLKKHDIEFEQLTAGEYKRTLTMFGENSDKAREKFKEELEETHGLFKDFIRDHR--P 273

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +A ++GL+D +   +++  +        +I  +      K    
Sbjct: 274 ALDLEKVATGEHWFGTQAHELGLVDEISTSDDLVVAACKDKTVLAIHYV-----QKKKLS 328

Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283
             L  ++  S     + L+++ +
Sbjct: 329 DKLAGVAGKSADSVLMKLIERGQ 351


>gi|84393898|ref|ZP_00992641.1| sohB protein, peptidase U7 family [Vibrio splendidus 12B01]
 gi|84375495|gb|EAP92399.1| sohB protein, peptidase U7 family [Vibrio splendidus 12B01]
          Length = 349

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 112/263 (42%), Gaps = 17/263 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
                   PH+  +   G I+        +E+   +      D    +++ L S GG  +
Sbjct: 93  GELDSKREPHLFVLDFNGSIDAKEVASLREEVTAVLAVAREGDE---VLLKLESGGGMVH 149

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P 
Sbjct: 150 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIAQLPN 209

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E + KA +  ++ ++ ++  F   + + R  P
Sbjct: 210 FNKLLKKHDIEFEQLTAGEYKRTLTMFGENSDKAREKFKEELEETHGLFKDFIRDHR--P 267

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +A ++GL+D +   +++  +        +I  +      K    
Sbjct: 268 ALDLEKVATGEHWFGTQAHELGLVDEISTSDDLVVAACKDKTVLAIHYV-----QKKKLS 322

Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283
             L  ++  S     + L+++ +
Sbjct: 323 DKLAGVAGKSADSVLMKLIERGQ 345


>gi|27366259|ref|NP_761787.1| putative inner membrane peptidase [Vibrio vulnificus CMCP6]
 gi|37679482|ref|NP_934091.1| putative periplasmic protease [Vibrio vulnificus YJ016]
 gi|320156768|ref|YP_004189147.1| putative protease sohB [Vibrio vulnificus MO6-24/O]
 gi|27362460|gb|AAO11314.1| SohB protein, peptidase U7 family [Vibrio vulnificus CMCP6]
 gi|37198226|dbj|BAC94062.1| periplasmic serine protease [Vibrio vulnificus YJ016]
 gi|319932080|gb|ADV86944.1| possible protease sohB [Vibrio vulnificus MO6-24/O]
          Length = 353

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 107/256 (41%), Gaps = 17/256 (6%)

Query: 35  SPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
            PH+  +   G I+        +E+   +      D    +++ L S GG  +       
Sbjct: 104 EPHLFVLDFNGSIDAKEVKSLREEITAILAVAGEGDE---VLLRLESGGGMVHGYGLASS 160

Query: 89  AIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P     L K
Sbjct: 161 QLDRIKAAGLPLTIAVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPNFNKLLKK 220

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
             +  + + +   K   + F E   KA +  +  ++ ++  F   + E R  P  +   +
Sbjct: 221 HDIEFEQMTAGEYKRTLTMFGENTDKAREKFKQELEETHDLFKDFIRERR--PELELEKV 278

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G  W G +A  +GL+D +   +++  +        ++  +      K      L   +
Sbjct: 279 ATGEHWFGTQAHALGLVDDIATSDDLIVAACKEKTVLAVHYV-----QKKKLADKLAGSA 333

Query: 268 ISSLLEDTIPLMKQTK 283
                   + L ++ +
Sbjct: 334 AKVADSVILKLAERGQ 349


>gi|145631779|ref|ZP_01787539.1| protease IV [Haemophilus influenzae R3021]
 gi|144982569|gb|EDJ90119.1| protease IV [Haemophilus influenzae R3021]
          Length = 329

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 110/287 (38%), Gaps = 44/287 (15%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52
            ++ +    V L  V L V   S+SS  + +    S     + + G + D+++       
Sbjct: 14  FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTALTSEGALLLNLDGYLADNRDETLRWQD 73

Query: 53  ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93
                             ++  I++   D     L++ L+   G    A + I  AI + 
Sbjct: 74  ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISQF 133

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           KN    +    +  +   Y ++  ++ I       V   G+  +  Y K  LDKL V+  
Sbjct: 134 KNAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF  ++++ +A   MQ  +   ++ +V  VSE+RNI  D    L + +
Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDNI--LPNAK 251

Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            +              A++ GL+  V  + ++ + L AL    S  K
Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKKLTALFGKGSDGK 298


>gi|15677437|ref|NP_274593.1| putative periplasmic protease [Neisseria meningitidis MC58]
 gi|7226836|gb|AAF41940.1| putative protease [Neisseria meningitidis MC58]
          Length = 367

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 97/218 (44%), Gaps = 9/218 (4%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127
           +++ L SPGG  +        +++++ R   +T  V ++AAS GY+++C ++ I +A  +
Sbjct: 156 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIASAPFA 215

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           +VGS+GV+ + P +   L K  + +  + +   K   +   E   K  Q  +  ++ ++ 
Sbjct: 216 IVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 275

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F + VSE+R  P      ++ G  W G +A  + LID +   +++    +        +
Sbjct: 276 LFKQFVSENR--PQLDIEEVATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 327

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           ++ +    +         L   + +E     +   +  
Sbjct: 328 QVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRAD 365


>gi|153871746|ref|ZP_02000840.1| Peptidase S49, SppA [Beggiatoa sp. PS]
 gi|152071791|gb|EDN69163.1| Peptidase S49, SppA [Beggiatoa sp. PS]
          Length = 211

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 17/202 (8%)

Query: 81  YAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
                I   I++++ + P I       ++ AS GY I+ A++ I A + S+VGSIGVL  
Sbjct: 1   MQAGYINDEIRRLRKKHPEIPVYAVATDICASGGYYIAAAADEIYADKASVVGSIGVLMD 60

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
                  ++KLGV  + + +   K    PFS +    V+ ++ V++  +  F++ V E R
Sbjct: 61  GFGFVETMNKLGVERRLLTAGEHKGFLDPFSPMKEDDVEHIKTVLNDIHVQFIKQVKEGR 120

Query: 198 NIPYD--------KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
                           +L  G +WTG +A ++GL+D +G    V + +          KI
Sbjct: 121 EKSLTNKGKLELLDNPILFSGLVWTGEQALELGLVDGLGSSSYVAREIIK------AEKI 174

Query: 250 KDWNPPKNYWFCDLKNLSISSL 271
           KD+ P  NY     + L  +  
Sbjct: 175 KDFTPKPNYLDRFAERLGATMA 196


>gi|56707601|ref|YP_169497.1| putative periplasmic protease [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670072|ref|YP_666629.1| putative periplasmic protease [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456672|ref|ZP_03665145.1| putative periplasmic protease [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370119|ref|ZP_04986125.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874422|ref|ZP_05247132.1| peptidase S49 family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604093|emb|CAG45092.1| peptidase family S49 protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320405|emb|CAL08475.1| peptidase family S49 protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568363|gb|EDN34017.1| hypothetical protein FTBG_01222 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840421|gb|EET18857.1| peptidase S49 family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158759|gb|ADA78150.1| putative periplasmic protease [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 339

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 104/253 (41%), Gaps = 14/253 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAY 81
               +     +  I  +G I+ SQ      E+   +   + +D    +IV + SPGG   
Sbjct: 86  DKQDDKPKQKIFVINFKGDIDASQVENLRNEVSAILAVANTEDE---IIVRIDSPGGVVN 142

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPY 140
                   +++++     +T   +  A++G  +  A  + I+AA  ++VGSIGV+   P 
Sbjct: 143 GYGFAAAQLERIRQAGINLTVCIDQVAASGGYMMSAVAHKIIAAPFAIVGSIGVVGTIPN 202

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           ++  L+K G++++   S   K   +       +     +  ++S +  F + +   R  P
Sbjct: 203 IRELLEKNGINVEMHTSGEYKRTLTTVGVNTEEGRNKFKQDLESIHQLFKKHILVYR--P 260

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +A ++GL+D +   ++    L  L    ++ ++      +  + 
Sbjct: 261 SLDIDKVATGEYWFGKDALELGLVDKIQTYDDYLIDL--LKKQHNVYEVSYVIKKEKGFL 318

Query: 261 CDLKNLSISSLLE 273
               ++   ++  
Sbjct: 319 RSKFSMLKRAITN 331


>gi|148260959|ref|YP_001235086.1| peptidase S49 [Acidiphilium cryptum JF-5]
 gi|146402640|gb|ABQ31167.1| peptidase S49 [Acidiphilium cryptum JF-5]
          Length = 265

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 98/255 (38%), Gaps = 15/255 (5%)

Query: 34  NSPHVARIAIRGQI------EDSQELIERIERISRDDS--ATALIVSLSSPGGSAYAGEA 85
           + P V  I + G I       + +     I+R           LI+++ SPGGS    + 
Sbjct: 8   SRPCVPVIRLAGLISPREGAVNLERFAPAIDRGFDLAKGGTKLLILAIESPGGSPVQSDL 67

Query: 86  IFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           I R I++        V+  + ++ AS GY I+CA + I A   S+VGSIGV+     +  
Sbjct: 68  IGRHIRRKAEETGVRVLAVIGDVGASGGYWIACAGDEIFANPMSIVGSIGVVGGGFGLHD 127

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            + + G+  + V +   K    PFS   P      Q ++D  +  F   V E R      
Sbjct: 128 LIRRFGIERRIVTAGANKLRNDPFSPERPGDAAFNQALLDDIHDAFKAWVRERRGAALKG 187

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              + DG    G+ AK  GLID  G    +       G      K     P + +    L
Sbjct: 188 DDTVFDGSYMLGSAAKARGLIDGFGDVRGLIT-----GRCGPRAKPVFLGPKRKFSLLRL 242

Query: 264 KNLSISSLLEDTIPL 278
              S    L + +  
Sbjct: 243 FGRSSLIELANAMEA 257


>gi|153213542|ref|ZP_01948832.1| sohB protein, peptidase U7 family [Vibrio cholerae 1587]
 gi|124115878|gb|EAY34698.1| sohB protein, peptidase U7 family [Vibrio cholerae 1587]
          Length = 356

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 108/267 (40%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
                   PH+  +  +G I        +E +  I  +++      +++ L + GG  + 
Sbjct: 100 GELESKRDPHLFVLDFQGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 157

Query: 83  GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P  
Sbjct: 158 YGLASSQLDRLKAAGLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 217

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  +  + + +   K   + F E   KA +  +  ++ ++  F   + E R  P 
Sbjct: 218 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHQLFKDFIREHR--PA 275

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +AK +GL+D +   +++  +            +  +   K     
Sbjct: 276 LDLDKVATGEHWFGTQAKALGLVDEIQTSDDLIVAACK----SKTVLLLRYTQKKK--LA 329

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D          ++ +  +     + L 
Sbjct: 330 DKLAGVAGDAADNVLLKLISRGQRPLV 356


>gi|28898806|ref|NP_798411.1| putative periplasmic protease [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28807025|dbj|BAC60295.1| sohB protein, peptidase U7 family [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 353

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 110/263 (41%), Gaps = 17/263 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
            S      PH+  +   G I+        +E+   +      D    +++ L S GG  +
Sbjct: 97  GSLDSKREPHLFVLDFNGSIDAKEVGSLREEITAILAVAREGDE---VLLRLESGGGMVH 153

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P 
Sbjct: 154 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPN 213

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E   KA    +  ++ ++  F   + E R  P
Sbjct: 214 FNKLLKKHDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHVLFKDFIRERR--P 271

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
             +   ++ G  W G +AK++GL+D +   +++  +        ++  +      K    
Sbjct: 272 SLELEKVATGEHWFGTQAKELGLVDEISTSDDLVVAACKEKTVLAVHYV-----QKKKLA 326

Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283
             L  ++        + L ++ +
Sbjct: 327 DKLAGVASKVADSVVLKLAERGQ 349


>gi|86148848|ref|ZP_01067109.1| sohB protein, peptidase U7 family protein [Vibrio sp. MED222]
 gi|85833365|gb|EAQ51562.1| sohB protein, peptidase U7 family protein [Vibrio sp. MED222]
          Length = 353

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 112/263 (42%), Gaps = 17/263 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
                   PH+  +   G I+        +E+   +      D    +++ L S GG  +
Sbjct: 97  GELDSKREPHLFVLDFNGSIDAKEVASLREEVTAVLAVAREGDE---VLLKLESGGGMVH 153

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P 
Sbjct: 154 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIAQLPN 213

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E + KA +  ++ ++ ++  F   + + R  P
Sbjct: 214 FNKLLKKHDIEFEQLTAGEYKRTLTMFGENSDKAREKFKEELEETHGLFKDFIRDHR--P 271

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +A ++GL+D +   +++  +        +I  +      K    
Sbjct: 272 ALDLEKVATGEHWFGTQAHELGLVDEISTSDDLVVAACKDKTVLAIHYV-----QKKKLS 326

Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283
             L  ++  S     + L+++ +
Sbjct: 327 DKLAGVAGKSADSVLMKLIERGQ 349


>gi|238754974|ref|ZP_04616323.1| protease sohB [Yersinia ruckeri ATCC 29473]
 gi|238706833|gb|EEP99201.1| protease sohB [Yersinia ruckeri ATCC 29473]
          Length = 348

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 116/268 (43%), Gaps = 14/268 (5%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER--ISRDDSATALIVSLSSPGGSAY 81
           + +  +    P +  +  +G I+  +   L E I             +++ L SPGG  +
Sbjct: 90  AKAGAIAAVKPCLYVLDFKGSIDAHEVTSLREEISAVLAVATPQ-DEVLLRLESPGGVVH 148

Query: 82  AGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   ++++++    +T  V ++AAS GY+++C ++ IV+A  +++GSIGV+ Q P 
Sbjct: 149 GYGLAASQLERLRHAGVRLTVAVDKVAASGGYMMACVADRIVSAPFAIIGSIGVVAQIPN 208

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  + ++   +   K   + F E   +  +  ++ ++ ++  F + V + R  P
Sbjct: 209 FHRLLKKNDIDLELHTAGEFKRTLTLFGENTEQGREKFREDLNETHKLFKQFVKQQR--P 266

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +AK+ GL+D +G  +++   +  +       ++      +    
Sbjct: 267 SLDIDAVATGEHWFGTQAKEKGLVDAIGTSDDLL--IAEM----ENHEVISVRYSRRKRL 320

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288
            D    S +  ++  +    Q   + L 
Sbjct: 321 MDRFTGSAAESIDRLLLRWWQRGEKPLL 348


>gi|134302463|ref|YP_001122433.1| putative periplasmic protease [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134050240|gb|ABO47311.1| peptidase, S49 (protease IV) family protein [Francisella tularensis
           subsp. tularensis WY96-3418]
          Length = 338

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 104/252 (41%), Gaps = 14/252 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYA 82
              +     +  I  +G I+ SQ      E+   +   + +D    +IV + SPGG    
Sbjct: 86  DKQDKPKQKIFVINFKGDIDASQVENLRNEVSAILAVANTEDE---IIVRIDSPGGVVNG 142

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYV 141
                  +++++     +T   +  A++G  +  A  + I+AA  ++VGSIGV+   P +
Sbjct: 143 YGFAAAQLERIRQAGINLTVCIDQVAASGGYMMSAVAHKIIAAPFAIVGSIGVVGTIPNI 202

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
           +  L+K G++++   S   K   +       +     +  ++S +  F + +   R  P 
Sbjct: 203 RELLEKNGINVEMHTSGEYKRTLTTVGVNTEEGRNKFKQDLESIHQLFKKHILVYR--PS 260

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +A ++GL+D +   ++    L  L    ++ ++      +  +  
Sbjct: 261 LDIDKVATGEYWFGKDALELGLVDKIQTYDDYLIDL--LKKQHNVYEVSYVIKKEKGFLR 318

Query: 262 DLKNLSISSLLE 273
              ++   ++  
Sbjct: 319 SKFSMLKRAITN 330


>gi|238798377|ref|ZP_04641859.1| protease sohB [Yersinia mollaretii ATCC 43969]
 gi|238717762|gb|EEQ09596.1| protease sohB [Yersinia mollaretii ATCC 43969]
          Length = 348

 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 117/270 (43%), Gaps = 18/270 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGS 79
           + +  V    P +  I  +G I+        +E+   +   +  D    +++ L SPGG 
Sbjct: 90  AKAGAVAAIKPCLYVIDFKGSIDAHEVTSLREEISAVLAVATAQDE---VLLRLESPGGV 146

Query: 80  AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +        +++++++   +T  V ++AAS GY+++C ++ I++A  +++GSIGV+ Q 
Sbjct: 147 VHGYGLAASQLERLRHKGIRLTVAVDKVAASGGYMMACVADRIISAPFAIIGSIGVVAQI 206

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P     L K  + ++   +   K   + F E   +  +  ++ ++ ++  F + V + R 
Sbjct: 207 PNFHRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVQQQR- 265

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P      ++ G  W G +AK  GL+D +G  +++   +  +       ++      +  
Sbjct: 266 -PSLDIDAVATGEHWFGTQAKDKGLVDAIGTSDDLL--IAEM----DNHEVIGVRYSRRK 318

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
              D    S +   +  +    Q   + L 
Sbjct: 319 RLMDRFTGSAAESADRLLLRWWQRGEKPLL 348


>gi|186476640|ref|YP_001858110.1| peptidase S49 [Burkholderia phymatum STM815]
 gi|184193099|gb|ACC71064.1| peptidase S49 [Burkholderia phymatum STM815]
          Length = 292

 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 14/218 (6%)

Query: 38  VARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           VA I + G +                  +         D    A+++S+ SPGG      
Sbjct: 76  VAVIDVSGTLVQKSSNLRPYSGMLGYNAIRHNFLAALDDKKVKAIVLSIDSPGGEVAGCF 135

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +   I + ++ KP +  ++E   SA Y ++ A   I    T   GS+GV+  +      
Sbjct: 136 DLADLIYESRSVKPTLAILNESGYSAAYALASACEQITVPRTGGTGSVGVICMHVDQSKA 195

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           +DK G+++  +K    KA+ + F+ ++ +A+   Q  VD     FV+ V+ +RN+  D  
Sbjct: 196 IDKAGLTVTIIKYGDRKADGNQFNPLSKEALDRYQAEVDEMGELFVQTVARNRNLSADVV 255

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              +    + GA   ++G  D V   +E ++SL     
Sbjct: 256 RK-TQATTFLGAAGVEIGFADAVMAPDEAFRSLLKELG 292


>gi|88859935|ref|ZP_01134574.1| protease (may metabolize cleaved signal peptides)
           [Pseudoalteromonas tunicata D2]
 gi|88817929|gb|EAR27745.1| protease (may metabolize cleaved signal peptides)
           [Pseudoalteromonas tunicata D2]
          Length = 337

 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 107/261 (40%), Gaps = 13/261 (4%)

Query: 30  HVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSA--TALIVSLSSPGGSAYAGEA 85
              D    V  +   G I   +  EL E I  I     A    +++ L S GG  +    
Sbjct: 82  QKNDVKNKVYVLDFNGSIDAREVDELREEITAILTVAQAGKDQVLLRLESGGGVVHGYGL 141

Query: 86  IFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
               ++++KN    +T    ++AAS GY+++C ++ +VAA  +++GSIGV+ Q P     
Sbjct: 142 AASQLERIKNAGINLTVCVDKVAASGGYMMACVADKVVAAPFAIIGSIGVIAQIPNFNKI 201

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K  +  + + +   K   + F E   +A    ++ +  ++  F + VS  R  P    
Sbjct: 202 LKKNDIEFEQITAGEFKRTLTLFGENTDQARDKFREEIQQTHELFKQFVSLKR--PTLDL 259

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             ++ G  W  ++A + GL+D +   ++V  +               ++  K        
Sbjct: 260 TEVATGEHWFASQAIEKGLVDEIATSDDVLLTFNQQSQIYK----VKFSHKKTLADKFSI 315

Query: 265 NL--SISSLLEDTIPLMKQTK 283
            L   I   +   +  +++ K
Sbjct: 316 GLTKGIERSILSILSTLQRLK 336


>gi|329942445|ref|ZP_08291255.1| peptidase S49 family protein [Chlamydophila psittaci Cal10]
 gi|332287086|ref|YP_004421987.1| putative exported protease [Chlamydophila psittaci 6BC]
 gi|325506439|gb|ADZ18077.1| putative exported protease [Chlamydophila psittaci 6BC]
 gi|328815355|gb|EGF85343.1| peptidase S49 family protein [Chlamydophila psittaci Cal10]
 gi|328914320|gb|AEB55153.1| peptidase, U7 family protein, putative [Chlamydophila psittaci 6BC]
          Length = 333

 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 111/234 (47%), Gaps = 12/234 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQELIERIERISR-------DDSATALIVSLSSPGGSAY 81
             +  ++P +A + ++  I  S+   + I+            D    +I+ +  PGG  +
Sbjct: 55  KDIGKDAPIIAVLEMKDVIASSKHTAKIIQDAITTLDSAPYKDRVKGIIIDMDCPGGEVF 114

Query: 82  AGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQY 138
               ++  IQ  K R        V+ + AS GY ++CA++ I +  +SL+GS+GVL   Y
Sbjct: 115 EISRVYSIIQFWKQRTQCPVYVFVNGLCASGGYYVACAADKIYSTSSSLIGSVGVLSGPY 174

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             VK  L + GV    + +   KA  +P++E   K  ++ Q+++D  Y  FV +V  +R 
Sbjct: 175 FNVKEGLSRYGVQSDLLIAGKDKAPMNPYTEWTAKDREIRQEIIDYLYGQFVDVVVTNRP 234

Query: 199 I-PYDKTLVLSDGRIWTGAEAKKVGLID-VVGGQEEVWQSLYALGVDQSIRKIK 250
               DK + +   R+++  +A + G ID     +++V Q L A    ++  ++ 
Sbjct: 235 RLTKDKLVSVLGARLYSPEKALEEGYIDVANVTKQQVLQDLVADCKIENNYRVI 288


>gi|153802311|ref|ZP_01956897.1| sohB protein, peptidase U7 family [Vibrio cholerae MZO-3]
 gi|124122136|gb|EAY40879.1| sohB protein, peptidase U7 family [Vibrio cholerae MZO-3]
          Length = 323

 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 107/267 (40%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
                   PH+  +   G I        +E +  I  +++      +++ L + GG  + 
Sbjct: 67  GELESKRDPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 124

Query: 83  GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P  
Sbjct: 125 YGLASSQLDRLKAAGLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 184

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  +  + + +   K   + F E   KA +  +  ++ ++  F   + E R  P 
Sbjct: 185 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHQLFKDFIREHR--PA 242

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +AK +GL+D +   +++  +            +  +   K     
Sbjct: 243 LDLDKVATGEHWFGTQAKALGLVDEIQTSDDLIVAACK----SKTVLLLRYTQKKK--LA 296

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D          ++ +  +     + L 
Sbjct: 297 DKLAGVAGDAADNVLLKLISRGQRPLV 323


>gi|302187752|ref|ZP_07264425.1| putative periplasmic protease [Pseudomonas syringae pv. syringae
           642]
 gi|330953371|gb|EGH53631.1| putative inner membrane peptidase [Pseudomonas syringae Cit 7]
          Length = 340

 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 102/271 (37%), Gaps = 15/271 (5%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGG 78
                    +    V  +   G I+ S     +  I  +  ++ D     +++ L S GG
Sbjct: 79  ALKKEKKQAEPKARVYVLDFDGDIKASATESMRHEITALLTLATDKD--EVVLRLESGGG 136

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
             ++       + +++     +T    ++AAS GY+++C  N I++A  +++GSIGV+ Q
Sbjct: 137 MVHSYGLASSQLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQ 196

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
            P V   L K  +  + + +   K   + F E   K  +  Q  +D ++  F   V+  R
Sbjct: 197 LPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASYR 256

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
             P      ++ G +W G  A    L+D +   +E             +  +      + 
Sbjct: 257 --PQLSIDEVATGEVWLGMAAVDKLLVDELKTSDEYLAERAKDADVFHLHYV-----QRK 309

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                +   + +S  +       +   Q  W
Sbjct: 310 SLQERMGMAAATSADQLATKWWGRLTQQRFW 340


>gi|330967647|gb|EGH67907.1| putative inner membrane peptidase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 340

 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 103/271 (38%), Gaps = 15/271 (5%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGG 78
                  + +    V  +   G I+ S     +  I  +  ++ D     +++ L S GG
Sbjct: 79  ALKKDKKLAEPKARVYVLDFDGDIKASATESMRHEITALLTLATDKD--EVVLRLESGGG 136

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
             ++       + +++     +T    ++AAS GY+++C  N I++A  +++GSIGV+ Q
Sbjct: 137 MVHSYGLASSQLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQ 196

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
            P V   L K  +  + + +   K   + F E   K  +  Q  +D ++  F   V+  R
Sbjct: 197 LPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASYR 256

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
             P      ++ G +W G  A    L+D +   +E             +  +      + 
Sbjct: 257 --PQLSIDEVATGEVWLGMAAVDKLLVDELKTSDEYLAERAKQADVFHLHYV-----QRK 309

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                +   + +S  +       +   Q  W
Sbjct: 310 SLQERMGMAAATSADQLATKWWGRLTQQRFW 340


>gi|145635462|ref|ZP_01791163.1| predicted inner membrane peptidase [Haemophilus influenzae PittAA]
 gi|145267336|gb|EDK07339.1| predicted inner membrane peptidase [Haemophilus influenzae PittAA]
          Length = 353

 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 7/224 (3%)

Query: 38  VARIAIRGQIEDSQE--LIERIERISRDDSATA-LIVSLSSPGGSAYAGEAIFRAIQKVK 94
           V  +   G I  S+   L E I  I         +++ L SPGG  +        + ++K
Sbjct: 106 VYVLDFCGDISASETTALREEISAILNVAKPKDEVLLRLESPGGIVHNYGFAASQLSRLK 165

Query: 95  NRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
            +   +T  V ++AAS GY+++C ++ IV+A  +++GSIGV+ Q P V   L K  V + 
Sbjct: 166 QKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDVDVD 225

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
            + +   K   +   E   K  Q  Q  ++ ++  F + VS++R         ++ G  W
Sbjct: 226 VMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATGEHW 283

Query: 214 TGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256
            G +A  + L+D +   +++  + +    V     ++K     K
Sbjct: 284 FGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKK 327


>gi|77459336|ref|YP_348843.1| putative periplasmic protease [Pseudomonas fluorescens Pf0-1]
 gi|77383339|gb|ABA74852.1| inner membrane peptidase. Serine peptidase. MEROPS family S49
           [Pseudomonas fluorescens Pf0-1]
          Length = 340

 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 103/249 (41%), Gaps = 12/249 (4%)

Query: 32  EDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAGEAIFR 88
            D  P V  +   G I+ S  + L   I  +    +    +++ L S GG  ++      
Sbjct: 87  PDAKPRVFVLDFDGDIKASATESLRHEITALLTLATPKDEVVLRLESGGGMVHSYGLASS 146

Query: 89  AIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            + +++     +T    ++AAS GY+++C    I++A  +++GSIGV+ Q P V   L K
Sbjct: 147 QLARIREAGVPLTVCIDKVAASGGYMMACIGEKIISAPFAILGSIGVVAQLPNVNRLLKK 206

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
             +  + + +   K   + F E   K  +  Q+ +D ++  F   V+  R  P      +
Sbjct: 207 HDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLDITHQLFKNFVARYR--PQLAIDEV 264

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G +W G  A +  L+D +   +E               ++   +  +     +   ++
Sbjct: 265 ATGEVWLGIAALEKQLVDELKTSDEYLAERAKQS------EVYHLHYAERKSLQERIGMA 318

Query: 268 ISSLLEDTI 276
            S  ++  +
Sbjct: 319 ASGSVDRVL 327


>gi|89256882|ref|YP_514244.1| putative periplasmic protease [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315261|ref|YP_763984.1| putative periplasmic protease [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156503057|ref|YP_001429122.1| putative periplasmic protease [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167009223|ref|ZP_02274154.1| peptidase family S49 protein [Francisella tularensis subsp.
           holarctica FSC200]
 gi|290953621|ref|ZP_06558242.1| putative periplasmic protease [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313054|ref|ZP_06803748.1| putative periplasmic protease [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144713|emb|CAJ80044.1| peptidase family S49 protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115130160|gb|ABI83347.1| S49 family SohB endopeptidase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156253660|gb|ABU62166.1| peptidase, S49 (protease IV) family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 338

 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 102/249 (40%), Gaps = 8/249 (3%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAGEA 85
              +     +  I  +G I+ S  + L   +  I    +    +IV + SPGG       
Sbjct: 86  DKQDKPKQKIFVINFKGDIDASQVENLRNEVSAILAVANIEDEIIVRIDSPGGVVNGYGF 145

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYVKPF 144
               +++++     +T   +  A++G  +  A  + I+AA  ++VGSIGV+   P ++  
Sbjct: 146 AAAQLERIRQVGINLTVCIDKVAASGGYMMSAVAHKIIAAPFAIVGSIGVVGTIPNIREL 205

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L+K G++++   S   K   +       +     +  ++S +  F + +   R  P    
Sbjct: 206 LEKNGINVEMHTSGEYKRTLTTVGVNTEEGRNKFKQDLESIHQLFKKHILVYR--PSLDI 263

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             ++ G  W G +A ++GL+D +   ++    L  L    ++ ++      +  +     
Sbjct: 264 DKVATGEYWFGKDALELGLVDKIQTYDDYLIDL--LKKQHNVYEVSYVIKKEKGFLRSKF 321

Query: 265 NLSISSLLE 273
           ++   ++  
Sbjct: 322 SMLKRAITN 330


>gi|330445595|ref|ZP_08309247.1| peptidase S49 family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489786|dbj|GAA03744.1| peptidase S49 family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 353

 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 97/239 (40%), Gaps = 12/239 (5%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80
             S      P +  +   G ++  +      E+   +      D    +++ L + GG  
Sbjct: 96  NGSLDTSREPRLFVVDFHGSLDAREVSSLREEITAILAVAIEGDE---VLLRLETGGGMV 152

Query: 81  YAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +        + ++K         V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P
Sbjct: 153 HGYGLASSQLDRLKAAGIKLTVSVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQLP 212

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                L K  +  + + +   K   + F E   KA +  Q  ++ ++  F   V+  R  
Sbjct: 213 NFNKLLKKNDIDYEQITAGEFKRTLTMFGENTDKAREKFQTEIEETHSLFKNFVAFHR-- 270

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           P      ++ G  W G +A  +GL+D +   +++            ++ ++     +  
Sbjct: 271 PDLDLEKVATGEHWFGQQALDLGLVDQISTSDDLITEACKDREVLKVKYVRRKKLAEKL 329


>gi|118497149|ref|YP_898199.1| putative periplasmic protease [Francisella tularensis subsp.
           novicida U112]
 gi|194323447|ref|ZP_03057224.1| peptidase, S49 (protease IV) family [Francisella tularensis subsp.
           novicida FTE]
 gi|208778942|ref|ZP_03246288.1| peptidase, S49 (protease IV) family [Francisella novicida FTG]
 gi|118423055|gb|ABK89445.1| peptidase family S49 protein [Francisella novicida U112]
 gi|194322302|gb|EDX19783.1| peptidase, S49 (protease IV) family [Francisella tularensis subsp.
           novicida FTE]
 gi|208744742|gb|EDZ91040.1| peptidase, S49 (protease IV) family [Francisella novicida FTG]
          Length = 338

 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 104/252 (41%), Gaps = 14/252 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYA 82
              +     +  I  +G I+ SQ      E+   +   + +D    +IV + SPGG    
Sbjct: 86  DKQDKPKQKIFVINFKGDIDASQVENLRNEVSAILAVANTEDE---IIVRIDSPGGVVNG 142

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYV 141
                  +++++     +T   +  A++G  +  A  + I+AA  ++VGSIGV+   P +
Sbjct: 143 YGFAAAQLERIRQAGINLTVCIDQVAASGGYMMSAVAHKIIAAPFAIVGSIGVVGTIPNI 202

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
           +  L+K G++++   S   K   +       +     +  ++S +  F + +   R  P 
Sbjct: 203 RELLEKNGINVEMHTSGEYKRTLTTVGVNTEEGRNKFKQDLESIHQLFKKHILVYR--PS 260

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +A ++GL+D +   ++    L  L    ++ ++      +  +  
Sbjct: 261 LDIDKVATGEYWFGKDALELGLVDKIQTYDDYLIDL--LNKQHNVYEVSYVIKKEKGFLR 318

Query: 262 DLKNLSISSLLE 273
              ++   ++  
Sbjct: 319 SKFSMLKRAITN 330


>gi|254372516|ref|ZP_04988005.1| hypothetical protein FTCG_00078 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254373978|ref|ZP_04989460.1| peptidase family S49 protein [Francisella novicida GA99-3548]
 gi|151570243|gb|EDN35897.1| hypothetical protein FTCG_00078 [Francisella novicida GA99-3549]
 gi|151571698|gb|EDN37352.1| peptidase family S49 protein [Francisella novicida GA99-3548]
 gi|328676618|gb|AEB27488.1| peptidase family S49 protein [Francisella cf. novicida Fx1]
          Length = 338

 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 104/252 (41%), Gaps = 14/252 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYA 82
              +     +  I  +G I+ SQ      E+   +   + +D    +IV + SPGG    
Sbjct: 86  DKQDKPKQKIFVINFKGDIDASQVENLRNEVSAILAVANTEDE---IIVRIDSPGGVVNG 142

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYV 141
                  +++++     +T   +  A++G  +  A  + I+AA  ++VGSIGV+   P +
Sbjct: 143 YGFAAAQLERIRQAGINLTVCIDQVAASGGYMMSAVAHKIIAAPFAIVGSIGVVGTIPNI 202

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
           +  L+K G++++   S   K   +       +     +  ++S +  F + +   R  P 
Sbjct: 203 RELLEKNGINVEMHTSGEYKRTLTTVGVNTEEGRNKFKQDLESIHQLFKKHILVYR--PS 260

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +A ++GL+D +   ++    L  L    ++ ++      +  +  
Sbjct: 261 LDIDKVATGEYWFGKDALELGLVDKIQTYDDYLIDL--LNKQHNVYEVSYVIKKEKGFLR 318

Query: 262 DLKNLSISSLLE 273
              ++   ++  
Sbjct: 319 SKFSMLKRAITN 330


>gi|301170437|emb|CBW30044.1| predicted inner membrane peptidase [Haemophilus influenzae 10810]
          Length = 353

 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 102/227 (44%), Gaps = 13/227 (5%)

Query: 38  VARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
           V  +   G I  S+      E+   +     +D    +++ L SPGG  +        + 
Sbjct: 106 VYVLDFCGDISASETTALREEISAILNVAKSEDE---VLLRLESPGGIVHNYGFAASQLS 162

Query: 92  KVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++K +   +T  V ++AAS GY+++C ++ IV+A  +++GSIGV+ Q P V   L K  V
Sbjct: 163 RLKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDV 222

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
            +  + +   K   +   E   K  Q  Q  ++ ++  F + VS++R         ++ G
Sbjct: 223 DVDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATG 280

Query: 211 RIWTGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256
             W G +A  + L+D +   +++  + +    V     ++K     K
Sbjct: 281 EHWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKK 327


>gi|260582614|ref|ZP_05850403.1| periplasmic serine protease [Haemophilus influenzae NT127]
 gi|260094286|gb|EEW78185.1| periplasmic serine protease [Haemophilus influenzae NT127]
          Length = 353

 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 102/227 (44%), Gaps = 13/227 (5%)

Query: 38  VARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
           V  +   G I  S+      E+   +     +D    +++ L SPGG  +        + 
Sbjct: 106 VYVLDFCGDISASETTALREEISAILNVAKSEDE---VLLRLESPGGIVHNYGFAASQLS 162

Query: 92  KVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++K +   +T  V ++AAS GY+++C ++ IV+A  +++GSIGV+ Q P V   L K  V
Sbjct: 163 RLKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDV 222

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
            +  + +   K   +   E   K  Q  Q  ++ ++  F + VS++R         ++ G
Sbjct: 223 DVDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATG 280

Query: 211 RIWTGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256
             W G +A  + L+D +   +++  + +    V     ++K     K
Sbjct: 281 EHWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKK 327


>gi|229847303|ref|ZP_04467405.1| putative periplasmic protease [Haemophilus influenzae 7P49H1]
 gi|229809728|gb|EEP45452.1| putative periplasmic protease [Haemophilus influenzae 7P49H1]
          Length = 353

 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 102/227 (44%), Gaps = 13/227 (5%)

Query: 38  VARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
           V  +   G I  S+      E+   +     +D    +++ L SPGG  +        + 
Sbjct: 106 VYVLDFCGDISASETTALREEISAILNVAKSEDE---VLLRLESPGGIVHNYGFAASQLS 162

Query: 92  KVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++K +   +T  V ++AAS GY+++C ++ IV+A  +++GSIGV+ Q P V   L K  V
Sbjct: 163 RLKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDV 222

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
            +  + +   K   +   E   K  Q  Q  ++ ++  F + VS++R         ++ G
Sbjct: 223 DVDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATG 280

Query: 211 RIWTGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256
             W G +A  + L+D +   +++  + +    V     ++K     K
Sbjct: 281 EHWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKK 327


>gi|145641066|ref|ZP_01796647.1| predicted inner membrane peptidase [Haemophilus influenzae R3021]
 gi|145274227|gb|EDK14092.1| predicted inner membrane peptidase [Haemophilus influenzae 22.4-21]
          Length = 323

 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 103/221 (46%), Gaps = 11/221 (4%)

Query: 38  VARIAIRGQIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
           V  +   G I  S+       I  I  +++ +    +++ L SPGG  +        + +
Sbjct: 106 VYVLDFCGDISASETTALREEISAILNVAKPED--EVLLRLESPGGIVHNYGFAASQLSR 163

Query: 93  VKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           +K +   +T  V ++AAS GY+++C ++ IV+A  +++GSIGV+ Q P V   L K  V 
Sbjct: 164 LKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDVD 223

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
           +  + +   K   +   E   K  Q  Q  ++ ++  F + VS++R         ++ G 
Sbjct: 224 VDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATGE 281

Query: 212 IWTGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKD 251
            W G +A  + L+D +   +++  + +    V     ++K+
Sbjct: 282 HWFGQQAFALQLVDEISTSDDLILEKMKEKQVLNVKYRLKN 322


>gi|261343650|ref|ZP_05971295.1| peptidase, S49 family [Providencia rustigianii DSM 4541]
 gi|282568033|gb|EFB73568.1| peptidase, S49 family [Providencia rustigianii DSM 4541]
          Length = 348

 Score = 86.6 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 104/234 (44%), Gaps = 6/234 (2%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEA 85
                  P +  +  +G ++  +   L E I  I    D    +++ L SPGG  +    
Sbjct: 93  GQSSVKKPCLYVLDFKGSMDAREVSSLREEISAILAVADQQDEVLLRLESPGGLVHGYGL 152

Query: 86  IFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
               + ++K +       V ++AAS GY+++C +N IVAA  S++GSIGV+ Q P +   
Sbjct: 153 AASQLMRLKEKNISLTIAVDKVAASGGYMMACIANKIVAAPFSIIGSIGVVAQVPNIHRL 212

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K  V ++   +   K   +   E   +  +   + ++S++  F   V ++R  P    
Sbjct: 213 LKKHDVDVELHTAGEYKRTLTMLGENTEQGRKKFVEDLNSTHELFKDFVHQNR--PSLDI 270

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
             ++ G  W G +A + GL+D +G  +++  +        S+R +      + +
Sbjct: 271 AAVATGEYWYGTQALEKGLVDEIGVSDDLIINAIETKEIISVRYVLSKKMVERF 324


>gi|121587057|ref|ZP_01676834.1| sohB protein, peptidase U7 family [Vibrio cholerae 2740-80]
 gi|121726239|ref|ZP_01679529.1| sohB protein, peptidase U7 family [Vibrio cholerae V52]
 gi|153828141|ref|ZP_01980808.1| sohB protein, peptidase U7 family [Vibrio cholerae 623-39]
 gi|227081233|ref|YP_002809784.1| sohB protein, peptidase U7 family [Vibrio cholerae M66-2]
 gi|229505345|ref|ZP_04394855.1| SohB protein peptidase U7 family [Vibrio cholerae BX 330286]
 gi|229510985|ref|ZP_04400464.1| SohB protein peptidase U7 family [Vibrio cholerae B33]
 gi|229518106|ref|ZP_04407550.1| SohB protein peptidase U7 family [Vibrio cholerae RC9]
 gi|229608364|ref|YP_002879012.1| periplasmic protease [Vibrio cholerae MJ-1236]
 gi|254291486|ref|ZP_04962277.1| sohB protein, peptidase U7 family [Vibrio cholerae AM-19226]
 gi|254848189|ref|ZP_05237539.1| peptidase U7 family protein sohB [Vibrio cholerae MO10]
 gi|297578664|ref|ZP_06940592.1| sohB protein [Vibrio cholerae RC385]
 gi|298498832|ref|ZP_07008639.1| peptidase U7 family sohB protein [Vibrio cholerae MAK 757]
 gi|9655526|gb|AAF94219.1| sohB protein, peptidase U7 family [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121548692|gb|EAX58741.1| sohB protein, peptidase U7 family [Vibrio cholerae 2740-80]
 gi|121631185|gb|EAX63558.1| sohB protein, peptidase U7 family [Vibrio cholerae V52]
 gi|146316416|gb|ABQ20955.1| sohB protein, peptidase U7 family [Vibrio cholerae O395]
 gi|148876383|gb|EDL74518.1| sohB protein, peptidase U7 family [Vibrio cholerae 623-39]
 gi|150422550|gb|EDN14506.1| sohB protein, peptidase U7 family [Vibrio cholerae AM-19226]
 gi|227009121|gb|ACP05333.1| sohB protein, peptidase U7 family [Vibrio cholerae M66-2]
 gi|227012876|gb|ACP09086.1| sohB protein, peptidase U7 family [Vibrio cholerae O395]
 gi|229344821|gb|EEO09795.1| SohB protein peptidase U7 family [Vibrio cholerae RC9]
 gi|229350950|gb|EEO15891.1| SohB protein peptidase U7 family [Vibrio cholerae B33]
 gi|229357568|gb|EEO22485.1| SohB protein peptidase U7 family [Vibrio cholerae BX 330286]
 gi|229371019|gb|ACQ61442.1| SohB protein peptidase U7 family [Vibrio cholerae MJ-1236]
 gi|254843894|gb|EET22308.1| peptidase U7 family protein sohB [Vibrio cholerae MO10]
 gi|297536258|gb|EFH75091.1| sohB protein [Vibrio cholerae RC385]
 gi|297543165|gb|EFH79215.1| peptidase U7 family sohB protein [Vibrio cholerae MAK 757]
          Length = 356

 Score = 86.2 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 107/267 (40%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
                   PH+  +   G I        +E +  I  +++      +++ L + GG  + 
Sbjct: 100 GELESKRDPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 157

Query: 83  GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P  
Sbjct: 158 YGLASSQLDRLKAAGLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 217

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  +  + + +   K   + F E   KA +  +  ++ ++  F   + E R  P 
Sbjct: 218 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHQLFKDFIREHR--PA 275

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +AK +GL+D +   +++  +            +  +   K     
Sbjct: 276 LDLDKVATGEHWFGTQAKALGLVDEIQTSDDLIVAACK----SKTVLLLRYTQKKK--LA 329

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D          ++ +  +     + L 
Sbjct: 330 DKLAGVAGDAADNVLLKLISRGQRPLV 356


>gi|308187005|ref|YP_003931136.1| protease [Pantoea vagans C9-1]
 gi|308057515|gb|ADO09687.1| putative protease [Pantoea vagans C9-1]
          Length = 348

 Score = 86.2 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 114/264 (43%), Gaps = 12/264 (4%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGEA 85
              +   P +  +  +G ++  +   L E I   ++       +++ L SPGG  +    
Sbjct: 93  GQTKSVKPTLYVLDFKGSMDAGEVSSLREEISAVLAVKQPGDEVLLRLESPGGVVHGYGL 152

Query: 86  IFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
               +Q++++    IT  V ++AAS GY+++C ++ IVAA  S++GSIGV+ Q P     
Sbjct: 153 AASQLQRLRDADLRITAAVDKVAASGGYMMACVADRIVAAPFSIIGSIGVVAQIPNFNRL 212

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L +  + ++   +   K   + F E   +  +  Q+ +D ++  F + V + R  P    
Sbjct: 213 LKRNDIDVELHTAGQYKRTLTLFGENTEEGREKFQEDLDETHLLFKQFVHQMR--PTLDI 270

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             ++ G  W G +A  +GLID +G  +++               +   +  +     D  
Sbjct: 271 DRVATGEHWYGRQALDLGLIDEIGTSDDLI------IRQMDQFSVLGVHYARRRKMMDRF 324

Query: 265 NLSISSLLEDTIPLMKQTKVQGLW 288
             S  S+ E  +  + Q   + L 
Sbjct: 325 TQSAGSVAERLLLKLWQRGEKPLL 348


>gi|255020331|ref|ZP_05292399.1| Periplasmic serine proteases (ClpP class) [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970251|gb|EET27745.1| Periplasmic serine proteases (ClpP class) [Acidithiobacillus caldus
           ATCC 51756]
          Length = 420

 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 83/220 (37%), Gaps = 16/220 (7%)

Query: 36  PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G +                  +    E    D    A+++ + S GG A  
Sbjct: 58  DGIAIVPVLGTLVRRSAYLDATSGLMSYHAIQAMAEDAFADPQVRAVLLEVDSSGGEAGG 117

Query: 83  GEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
              +   ++ +     KP+     E A SA Y I+ A+  +    T+  GSIGV+  +  
Sbjct: 118 VFDLALRLRALSKASGKPLWAIADEAALSAAYAIASAAEQLWLTRTAEAGSIGVVAAHVD 177

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
                 + G+S   + +   K +  P + +  +    +Q  +D  Y  FV LV+  R + 
Sbjct: 178 QSGADAQAGLSYTLLHAGEHKIDGHPHAPLPAEVAADIQADIDRLYDQFVELVASHRRLD 237

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                     RI+ G  A + GL D +G  ++   +L   
Sbjct: 238 AQAVRAT-QARIYRGQAALQAGLADRIGTLDDALAALQQR 276


>gi|161831162|ref|YP_001596297.1| putative periplasmic protease [Coxiella burnetii RSA 331]
 gi|161763029|gb|ABX78671.1| peptidase, S49 (protease IV) family [Coxiella burnetii RSA 331]
          Length = 338

 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 112/280 (40%), Gaps = 18/280 (6%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS------QELIERIERIS 61
           IK +Y +   +           +  +    +  +  +G I  S      +E+   +   +
Sbjct: 69  IKDKYELKRFLKSQKKEKKKKPNTTEAKKRIFVLNFQGDIRASAVCALREEITAVLTTAT 128

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNI 120
           RDD    +++ L S GG  +        +Q++      ++  + ++AAS GYL++C ++ 
Sbjct: 129 RDDQ---VLLRLESGGGVVHGYGLAASQLQRIKDAHIKLVIAIDKVAASGGYLMACVADR 185

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           I+AA  ++VGSIGVL Q P    +L K  +  + V +   K   + F E   K    M++
Sbjct: 186 IIAAPFAIVGSIGVLAQLPNFHRYLRKKYIDFEQVMAGDYKRTLTLFGENTEKGRAKMKE 245

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
            V+ ++  F   + E R         ++ G  W  ++A  + L+D +   ++   +    
Sbjct: 246 EVEETHTLFKSFIKEHRQ--EVDVEQIATGEHWYASKALDLRLVDELKTSDDYLLAASQ- 302

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
                   + +    +     +  + + S      +  + 
Sbjct: 303 -----NYDLFEVQYKRKPPLAERVSHNASRAYHQLLSGLM 337


>gi|330890771|gb|EGH23432.1| putative inner membrane peptidase [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 340

 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 102/271 (37%), Gaps = 15/271 (5%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGG 78
                    +    V  +   G I+ S     +  I  +  ++ D     +++ L S GG
Sbjct: 79  ALKKEKKQAEPKSRVYVLDFDGDIKASATESMRHEITALLTLATDKD--EVVLRLESGGG 136

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
             ++       + +++     +T    ++AAS GY+++C  N I++A  +++GSIGV+ Q
Sbjct: 137 MVHSYGLASSQLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQ 196

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
            P V   L K  +  + + +   K   + F E   K  +  Q  +D ++  F   V+  R
Sbjct: 197 LPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASYR 256

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
             P      ++ G +W G  A    L+D +   +E             +  +      + 
Sbjct: 257 --PQLSIDEVATGEVWLGMAAVDKLLVDELKTSDEYLAERAKDADVFHLHYV-----QRK 309

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                +   + +S  +       +   Q  W
Sbjct: 310 SLQERMGMAAATSADQLATKWWGRLTQQRFW 340


>gi|167621040|ref|ZP_02389671.1| phage minor capsid protein C, putative [Burkholderia thailandensis
           Bt4]
          Length = 322

 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 1/194 (0%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            +   + L   + +   D +   +++ + S GGSA     +   I+     KP+   V+ 
Sbjct: 99  PMTSYEGLRSAVNQAVADPAVEHIVLDIDSNGGSATGAFELADDIRAASLVKPITAIVNF 158

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
            A S GYLI+ A++ ++ + TS VGSIGV+  +  V    ++ G+ + SV +   K + +
Sbjct: 159 SAFSGGYLIAAAASKVIVSRTSGVGSIGVIANHLDVSKRDEQQGIKVTSVFAGDHKNDLT 218

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   ++ +++  +  +V +SY  FV  ++  R +          G I+ G +  + GL D
Sbjct: 219 PHEPLSDQSLTFLTSMVQNSYKQFVDAIANFRGLSTQAVKDTQAG-IFFGQKGVEAGLAD 277

Query: 226 VVGGQEEVWQSLYA 239
            V   +     + A
Sbjct: 278 SVETPQAAINRIAA 291


>gi|229220821|ref|NP_230705.2| putative periplasmic protease [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|229259766|ref|YP_001216528.2| putative periplasmic protease [Vibrio cholerae O395]
 gi|255745477|ref|ZP_05419425.1| SohB protein peptidase U7 family [Vibrio cholera CIRS 101]
 gi|262158448|ref|ZP_06029564.1| SohB protein peptidase U7 family [Vibrio cholerae INDRE 91/1]
 gi|262170309|ref|ZP_06037996.1| SohB protein peptidase U7 family [Vibrio cholerae RC27]
 gi|255736552|gb|EET91949.1| SohB protein peptidase U7 family [Vibrio cholera CIRS 101]
 gi|262021324|gb|EEY40038.1| SohB protein peptidase U7 family [Vibrio cholerae RC27]
 gi|262029889|gb|EEY48537.1| SohB protein peptidase U7 family [Vibrio cholerae INDRE 91/1]
          Length = 353

 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 107/267 (40%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
                   PH+  +   G I        +E +  I  +++      +++ L + GG  + 
Sbjct: 97  GELESKRDPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 154

Query: 83  GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P  
Sbjct: 155 YGLASSQLDRLKAAGLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 214

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  +  + + +   K   + F E   KA +  +  ++ ++  F   + E R  P 
Sbjct: 215 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHQLFKDFIREHR--PA 272

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +AK +GL+D +   +++  +            +  +   K     
Sbjct: 273 LDLDKVATGEHWFGTQAKALGLVDEIQTSDDLIVAACK----SKTVLLLRYTQKKK--LA 326

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D          ++ +  +     + L 
Sbjct: 327 DKLAGVAGDAADNVLLKLISRGQRPLV 353


>gi|134288686|ref|YP_001111084.1| gp5, prophage LambdaMc01, peptidase, U7 family [Burkholderia phage
           phi644-2]
 gi|134132071|gb|ABO60868.1| gp5, prophage LambdaMc01, peptidase, U7 family [Burkholderia phage
           phi644-2]
          Length = 322

 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 1/194 (0%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            +   + L   + +   D +   +++ + S GGSA     +   I+     KP+   V+ 
Sbjct: 99  PMTSYEGLRAAVNQAVADPAVEHIVLDIDSNGGSATGAFELADDIRAASLVKPITAIVNF 158

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
            A S GYLI+ A++ ++ + TS VGSIGV+  +  V    ++ G+ + SV +   K + +
Sbjct: 159 SAFSGGYLIAAAASQVIVSRTSGVGSIGVIANHLDVSKRDEQQGIKVTSVFAGDHKNDLT 218

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   ++ +++  +  +V +SY  FV  ++  R +          G I+ G +  + GL D
Sbjct: 219 PHEPLSDQSLAFLTSMVQNSYKQFVDAIANFRGLSTQAVKDTQAG-IFFGQKGVEAGLAD 277

Query: 226 VVGGQEEVWQSLYA 239
            V   +     + A
Sbjct: 278 SVETPQAAINRIAA 291


>gi|319776073|ref|YP_004138561.1| inner membrane peptidase [Haemophilus influenzae F3047]
 gi|319896882|ref|YP_004135077.1| inner membrane peptidase [Haemophilus influenzae F3031]
 gi|329123236|ref|ZP_08251804.1| protease SohB [Haemophilus aegyptius ATCC 11116]
 gi|317432386|emb|CBY80741.1| predicted inner membrane peptidase [Haemophilus influenzae F3031]
 gi|317450664|emb|CBY86884.1| predicted inner membrane peptidase [Haemophilus influenzae F3047]
 gi|327471445|gb|EGF16893.1| protease SohB [Haemophilus aegyptius ATCC 11116]
          Length = 353

 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 102/227 (44%), Gaps = 13/227 (5%)

Query: 38  VARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
           V  +   G I  S+      E+   +     +D    +++ L SPGG  +        + 
Sbjct: 106 VYVLDFCGDISASETTALREEISAILNVAKSEDE---VLLRLESPGGIVHNYGFAASQLS 162

Query: 92  KVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++K +   +T  V ++AAS GY+++C ++ IV+A  +++GSIGV+ Q P V   L K  V
Sbjct: 163 RLKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDV 222

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
            +  + +   K   +   E   K  Q  Q  ++ ++  F + VS++R         ++ G
Sbjct: 223 DVDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATG 280

Query: 211 RIWTGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256
             W G +A  + L+D +   +++  + +    V     ++K     K
Sbjct: 281 EHWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKK 327


>gi|229525671|ref|ZP_04415076.1| SohB protein peptidase U7 family [Vibrio cholerae bv. albensis
           VL426]
 gi|229339252|gb|EEO04269.1| SohB protein peptidase U7 family [Vibrio cholerae bv. albensis
           VL426]
          Length = 356

 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 107/267 (40%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
                   PH+  +   G I        +E +  I  +++      +++ L + GG  + 
Sbjct: 100 GELESKRDPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 157

Query: 83  GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P  
Sbjct: 158 YGLASSQLDRLKAAGLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 217

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  +  + + +   K   + F E   KA +  +  ++ ++  F   + E R  P 
Sbjct: 218 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHQLFKDFIREHR--PA 275

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +AK +GL+D +   +++  +            +  +   K     
Sbjct: 276 LDLDKVATGEHWFGTQAKTLGLVDEIQTSDDLIVAACK----SKTVLLLRYTQKKK--LA 329

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D          ++ +  +     + L 
Sbjct: 330 DKLAGVAGDAADNVLLKLISRGQRPLV 356


>gi|153824949|ref|ZP_01977616.1| sohB protein, peptidase U7 family [Vibrio cholerae MZO-2]
 gi|229529849|ref|ZP_04419239.1| SohB protein peptidase U7 family [Vibrio cholerae 12129(1)]
 gi|149741461|gb|EDM55491.1| sohB protein, peptidase U7 family [Vibrio cholerae MZO-2]
 gi|229333623|gb|EEN99109.1| SohB protein peptidase U7 family [Vibrio cholerae 12129(1)]
          Length = 356

 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 107/267 (40%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
                   PH+  +   G I        +E +  I  +++      +++ L + GG  + 
Sbjct: 100 GELESKRDPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 157

Query: 83  GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P  
Sbjct: 158 YGLASSQLDRLKAAGLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 217

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  +  + + +   K   + F E   KA +  +  ++ ++  F   + E R  P 
Sbjct: 218 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHQLFKDFIREHR--PA 275

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +AK +GL+D +   +++  +            +  +   K     
Sbjct: 276 LDLDKVATGEHWFGTQAKTLGLVDEIQTSDDLIVAACK----SKTVLLLRYTQKKK--LA 329

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D          ++ +  +     + L 
Sbjct: 330 DKLAGVAGDAADNVLLKLISRGQRPLV 356


>gi|262276077|ref|ZP_06053886.1| SohB protein peptidase U7 family [Grimontia hollisae CIP 101886]
 gi|262219885|gb|EEY71201.1| SohB protein peptidase U7 family [Grimontia hollisae CIP 101886]
          Length = 352

 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 106/238 (44%), Gaps = 12/238 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAY 81
           +S  +   PHV  +  +G I+  +      E+   +      D    ++V L S GG  +
Sbjct: 96  ASLEQSRKPHVFVVDFKGSIDAREVASLREEVTAILAVAKAGDE---VLVRLESGGGMVH 152

Query: 82  AGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           A       + ++K     +T  V ++AAS GY+++C ++ IVAA  ++VGSIGV+ Q P 
Sbjct: 153 AYGLASSQLDRIKQAGIPLTVAVDKVAASGGYMMACVADKIVAAPFAVVGSIGVIAQLPN 212

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E   KA +     ++ ++  F + +++ R  P
Sbjct: 213 FNKLLKKHDIEFEQLTAGEFKRTLTMFGENTDKAREKFLTELEETHALFKQFIADHR--P 270

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
                 ++ G  W G +A  +GLID +G  ++   S         ++ ++     +  
Sbjct: 271 SLDLEKVATGEHWFGNQALPLGLIDSIGTSDDYLVSAVKEKDVLGVKYVQRKKLAEKL 328


>gi|313847682|emb|CBY16670.1| putative exported protease [Chlamydophila psittaci RD1]
          Length = 335

 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 111/234 (47%), Gaps = 12/234 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQELIERIERISR-------DDSATALIVSLSSPGGSAY 81
             +  ++P +A + ++  I  S+   + I+            D    +I+ +  PGG  +
Sbjct: 57  KDIGKDAPIIAVLEMKDVIASSKHTAKIIQDAITTLDSAPYKDRVKGIIIDMDCPGGEVF 116

Query: 82  AGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQY 138
               ++  IQ  K R        V+ + AS GY ++CA++ I +  +SL+GS+GVL   Y
Sbjct: 117 EISRVYSIIQFWKQRTQCPVYVFVNGLCASGGYYVACAADKIYSTSSSLIGSVGVLSGPY 176

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             VK  L + GV    + +   KA  +P++E   K  ++ Q+++D  Y  FV +V  +R 
Sbjct: 177 FNVKEGLSRYGVQSDLLIAGKDKAPMNPYTEWTAKDREIRQEIIDYLYGQFVDVVVTNRP 236

Query: 199 I-PYDKTLVLSDGRIWTGAEAKKVGLID-VVGGQEEVWQSLYALGVDQSIRKIK 250
               DK + +   R+++  +A + G ID     +++V Q L A    ++  ++ 
Sbjct: 237 RLTKDKLVSVLGARLYSPEKALEEGYIDVANVTKQQVLQDLVADCKIENNYRVI 290


>gi|53729128|ref|ZP_00134093.2| COG0616: Periplasmic serine proteases (ClpP class) [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207496|ref|YP_001052721.1| putative periplasmic protease [Actinobacillus pleuropneumoniae L20]
 gi|126096288|gb|ABN73116.1| putative protease SohB [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 351

 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 105/231 (45%), Gaps = 12/231 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAAS 109
           +E+   I   +++D    +++ L SPGG  +        +Q+++     +T  V ++AAS
Sbjct: 124 REIDAVISLANKEDE---VLLRLESPGGVVHGYGLAASQLQRLRTHNIPLTVAVDKVAAS 180

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
            GY+++C +N IV+A  +++GS+GV+ Q P +   L K  + +  + +   K   +   E
Sbjct: 181 GGYMMACVANKIVSAPFAIIGSVGVVAQVPNIHRLLKKHEIDVDVMTAGEYKRTVTLVGE 240

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
              K  Q  Q  ++ ++  F + V+++R  P      ++ G  W G +A  + L+D +  
Sbjct: 241 NTEKGKQKFQQELEETHQLFKQFVAQNR--PQLDIEKIATGEHWFGKQALALDLVDEINT 298

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            +++  +          +++ +    +           +   +E+ I  + 
Sbjct: 299 SDDLLLNAIK------EKEVIELKFKQKKNLTQRLGEQVELSVENVIAKLL 343


>gi|238794712|ref|ZP_04638316.1| protease sohB [Yersinia intermedia ATCC 29909]
 gi|238725943|gb|EEQ17493.1| protease sohB [Yersinia intermedia ATCC 29909]
          Length = 348

 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 115/260 (44%), Gaps = 18/260 (6%)

Query: 36  PHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
           P +  I  +G I+        +E+   +   S  D    +++ L SPGG  +        
Sbjct: 100 PCLYVIDFKGSIDAHEVTSLREEISAVLAVASAQDE---VLLRLESPGGVVHGYGLAASQ 156

Query: 90  IQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
           +++++++   +T  V ++AAS GY+++C ++ I++A  +++GSIGV+ Q P     L K 
Sbjct: 157 LERLRHKGIRLTVAVDKVAASGGYMMACVADRIISAPFAIIGSIGVVAQIPNFHRLLKKN 216

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
            + ++   +   K   + F E   +  +  ++ ++ ++  F + V + R  P      ++
Sbjct: 217 DIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVQQQR--PSLDIDAVA 274

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
            G  W G +AK  GL+D +G  +++   +  +       ++   +  +     D    S 
Sbjct: 275 TGEHWFGTQAKDKGLVDAIGTSDDLL--IAEM----DNHEVIGVHYARRKRLMDRFTGSA 328

Query: 269 SSLLEDTIPLMKQTKVQGLW 288
           +   +  +    Q   + L 
Sbjct: 329 AESADRLLLRWWQRGEKPLL 348


>gi|328545661|ref|YP_004305770.1| peptidase S49 [polymorphum gilvum SL003B-26A1]
 gi|326415401|gb|ADZ72464.1| Peptidase S49 [Polymorphum gilvum SL003B-26A1]
          Length = 439

 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 53/268 (19%), Positives = 100/268 (37%), Gaps = 19/268 (7%)

Query: 32  EDNSPHVARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGG 78
               P +A + I G +              D  E+   +E    D +  A++V + SPGG
Sbjct: 52  SVTDPGIAVVPILGPLVTRGDWLTSLLGASDYGEVASAVEAALADPTVRAVLVEIDSPGG 111

Query: 79  SAYAGEAIFRAI--QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
                  +   +   +   +KP+     E A SA + I+  ++ +    T+ VGSIGV+ 
Sbjct: 112 EVGGLFDLVDRLVSLRQDAQKPLWAVASESALSAAFAIASVADRLYVTRTAEVGSIGVVA 171

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
            +          G+    V +   K E +  + ++  A+  +Q  VD+ +   V LV+ +
Sbjct: 172 IHVDESVADVMAGLKWTLVHAGDRKIEGNAHAPLSDTALSAIQADVDALHADLVTLVARN 231

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           RN+  D      +  I+ G      GL D +G  +     L  L       ++      +
Sbjct: 232 RNMSPDAVRAT-EAAIYRGQRGIGAGLADKLGTVDLA---LVDLARALDPPRLITGASQR 287

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKV 284
                  +  +  ++  D  P  +   V
Sbjct: 288 ARAHQPSRRKTAMTVEPDLNPAAEDAAV 315


>gi|328474635|gb|EGF45440.1| putative inner membrane peptidase [Vibrio parahaemolyticus 10329]
          Length = 353

 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 109/260 (41%), Gaps = 17/260 (6%)

Query: 31  VEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
                PH+  +   G I+        +E+   +      D    +++ L S GG  +   
Sbjct: 100 DSKREPHLFVLDFNGSIDAKEVASLREEITAILAVAREGDE---VLLRLESGGGMVHGYG 156

Query: 85  AIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    
Sbjct: 157 LASSQLDRIKAAGLPLTISVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPNFNK 216

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K  +  + + +   K   + F E   KA    +  ++ ++  F   + E R  P  +
Sbjct: 217 LLKKHDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHVLFKDFIRERR--PSLE 274

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +AK++GL+D +   +++  +        ++  +      K      L
Sbjct: 275 LEKVATGEHWFGTQAKELGLVDEISTSDDLVVAACKEKTVLAVHYV-----QKKKLADKL 329

Query: 264 KNLSISSLLEDTIPLMKQTK 283
             ++        + L ++ +
Sbjct: 330 AGVASKVADSVVLKLAERGQ 349


>gi|327483771|gb|AEA78178.1| Possible protease sohB [Vibrio cholerae LMA3894-4]
          Length = 353

 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 107/267 (40%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
                   PH+  +   G I        +E +  I  +++      +++ L + GG  + 
Sbjct: 97  GELESKRDPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 154

Query: 83  GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P  
Sbjct: 155 YGLASSQLDRLKAAGLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 214

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  +  + + +   K   + F E   KA +  +  ++ ++  F   + E R  P 
Sbjct: 215 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHQLFKDFIREHR--PA 272

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +AK +GL+D +   +++  +            +  +   K     
Sbjct: 273 LDLDKVATGEHWFGTQAKTLGLVDEIQTSDDLIVAACK----SKTVLLLRYTQKKK--LA 326

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D          ++ +  +     + L 
Sbjct: 327 DKLAGVAGDAADNVLLKLISRGQRPLV 353


>gi|87121325|ref|ZP_01077215.1| peptidase, U7 family protein [Marinomonas sp. MED121]
 gi|86163482|gb|EAQ64757.1| peptidase, U7 family protein [Marinomonas sp. MED121]
          Length = 348

 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 112/254 (44%), Gaps = 18/254 (7%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYA 82
           S V +    +  +   G I+ S      +E+   +   S DD    ++V L S GG  + 
Sbjct: 92  SSVIETKKRLFVLDFDGDIQASATQTLRREITAVLSVASADDE---VVVRLESGGGVVHG 148

Query: 83  GEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  +Q++     P+   V ++AAS GY+++C ++ I+AA  +++GSIGV+ Q P +
Sbjct: 149 YGLAASQLQRIKDANLPLTICVDKVAASGGYMMACVADKIIAAPFAILGSIGVVAQVPNI 208

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              LDK  V ++   +   K   +   E   +  +  +  ++ ++  F   VS +R  P 
Sbjct: 209 HRLLDKSLVDVELHTAGKYKRTLTMLGENTDEGREKFKQDLEDTHVLFKEFVSSAR--PV 266

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G +W G++A K  L+D V   +     L +      +  ++   P K     
Sbjct: 267 IDIEAIATGDVWYGSQALKNNLVDQVSTSD---AYLVSHFDSADVVSVRYQEPKK---LA 320

Query: 262 DLKNLSISSLLEDT 275
           +   LS+ S LE  
Sbjct: 321 EKLGLSVLSALEAK 334


>gi|323180068|gb|EFZ65623.1| head-tail preconnector protein GP5 domain protein [Escherichia coli
           1180]
          Length = 399

 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 82/188 (43%), Gaps = 1/188 (0%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
             ++  +++   D     +++ + SPGG A         I +++ +KPV    ++ A SA
Sbjct: 2   DGIVACLQQAMADSQVRGVLLDIDSPGGQAAGAFDCADMIYRLRQQKPVWALCNDTACSA 61

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
             L++ A +  +  +TS +GSIGV+  +      L + GV I  + S   K + + F  +
Sbjct: 62  AMLLASACSRRLVTQTSRIGSIGVMMSHVSYAGHLAQAGVDITLIYSGAHKVDGNQFEAL 121

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             +  Q MQ  +D++   F   V+    +  D     ++  ++ G    + GL D +   
Sbjct: 122 PAEVRQDMQQRIDAARRMFAEKVAMYTGLSVDAV-TGTEAAVFEGQSGIEAGLADELINA 180

Query: 231 EEVWQSLY 238
            +    + 
Sbjct: 181 SDAISVMA 188


>gi|307249131|ref|ZP_07531138.1| protease sohB [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306854419|gb|EFM86615.1| protease sohB [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
          Length = 351

 Score = 86.2 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 105/231 (45%), Gaps = 12/231 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAAS 109
           +E+   I   +++D    +++ L SPGG  +        +Q+++     +T  V ++AAS
Sbjct: 124 REIDAVISLANKEDE---VLLRLESPGGVVHGYGLAASQLQRLRTHNIPLTVAVDKVAAS 180

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
            GY+++C +N IVAA  +++GS+GV+ Q P +   L K  + +  + +   K   +   E
Sbjct: 181 GGYMMACVANKIVAAPFAIIGSVGVVAQVPNIHRLLKKHEIDVDVMTAGEYKRTVTLVGE 240

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
              K  Q  Q  ++ ++  F + V+++R  P      ++ G  W G +A  + L+D +  
Sbjct: 241 NTEKGKQKFQQELEETHQLFKQFVAQNR--PQLDIEKIATGEHWFGKQALALDLVDEINT 298

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            +++  +          +++ +    +           +   +E+ I  + 
Sbjct: 299 SDDLLLNAIK------EKEVIELKFKQKKNLTQRLGEQVELSVENVIAKLL 343


>gi|307321389|ref|ZP_07600787.1| peptidase S49 [Sinorhizobium meliloti AK83]
 gi|306892934|gb|EFN23722.1| peptidase S49 [Sinorhizobium meliloti AK83]
          Length = 301

 Score = 86.2 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 90/215 (41%), Gaps = 14/215 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
           P +A I I G              +   + +  ++      D   A++  + S GG    
Sbjct: 77  PGIALIEIEGSLVNKGKWIGKSCGMTSYEAIGVQVRDCIERDDIKAVVFEVDSYGGEVTG 136

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I ++   KP I  + + A SAGYL++     +V  +T + GSIGV+  +  + 
Sbjct: 137 AFDCAEQIFELSQVKPTIAVLTDHACSAGYLLASPCRQLVIPQTGICGSIGVISMHVDMS 196

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
            +L K G+ +  +K+   KA+ +P+  +    +Q     ++     F   V+  R     
Sbjct: 197 AWLAKEGLKVTILKAGEHKADFNPYEAIPDDVLQQELAELEELRVEFAATVARYRAGRLT 256

Query: 203 KTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           +   L ++ R++ G +A   GL D V    +V ++
Sbjct: 257 QQSALATEARVYRGQKAVDAGLADAVARPSQVLEA 291


>gi|251789767|ref|YP_003004488.1| putative periplasmic protease [Dickeya zeae Ech1591]
 gi|247538388|gb|ACT07009.1| Peptidase S49 domain protein [Dickeya zeae Ech1591]
          Length = 348

 Score = 86.2 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 105/249 (42%), Gaps = 16/249 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGS 79
           +     +   P +  +   G ++  +      E+   +     +D    +++ L SPGG 
Sbjct: 90  AKRGEEKSARPCLYVLDFNGSMDAGEVSSLREEVSAVLAVARPEDE---VLLRLESPGGV 146

Query: 80  AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +        +Q+ + R   +T  V ++AAS GY+++C ++ IVAA  ++VGSIGV+ Q 
Sbjct: 147 VHGYGLAASQLQRFRQRGIRLTVAVDKVAASGGYMMACVADRIVAAPFAIVGSIGVVAQI 206

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P     L    + ++   +   K   + F E   +  +  +  ++ ++  F + V E R 
Sbjct: 207 PNFNRLLKSKEIDVELHTAGQYKRTLTLFGENTEEGREKFRQELNETHLLFKQFVGEMR- 265

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P      ++ G  W G +AK++GL+D +G  +++  +        +      +   K  
Sbjct: 266 -PSLDIESVATGEHWFGTQAKEMGLVDAIGTSDDLLIAEMEKHEVLA----VRYTRRKRL 320

Query: 259 WFCDLKNLS 267
                 +  
Sbjct: 321 LDRLTGSTG 329


>gi|190149277|ref|YP_001967802.1| protease SohB [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|307244809|ref|ZP_07526908.1| protease sohB [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307251529|ref|ZP_07533436.1| protease sohB [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307256029|ref|ZP_07537817.1| protease sohB [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|307262588|ref|ZP_07544219.1| protease sohB [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|189914408|gb|ACE60660.1| putative protease SohB [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306854254|gb|EFM86460.1| protease sohB [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306860993|gb|EFM92999.1| protease sohB [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306865451|gb|EFM97346.1| protease sohB [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306872086|gb|EFN03799.1| protease sohB [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 351

 Score = 86.2 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 105/231 (45%), Gaps = 12/231 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAAS 109
           +E+   I   +++D    +++ L SPGG  +        +Q+++     +T  V ++AAS
Sbjct: 124 REIDAVISLANKEDE---VLLRLESPGGVVHGYGLAASQLQRLRTHNIPLTVAVDKVAAS 180

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
            GY+++C +N IVAA  +++GS+GV+ Q P +   L K  + +  + +   K   +   E
Sbjct: 181 GGYMMACVANKIVAAPFAIIGSVGVVAQVPNIHRLLKKHEIDVDVMTAGEYKRTVTLVGE 240

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
              K  Q  Q  ++ ++  F + V+++R  P      ++ G  W G +A  + L+D +  
Sbjct: 241 NTEKGKQKFQQELEETHQLFKQFVAQNR--PQLDIEKIATGEHWFGKQALALDLVDEINT 298

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            +++  +          +++ +    +           +   +E+ I  + 
Sbjct: 299 SDDLLLNAIK------EKEVIELKFKQKKNLTQRLGEQVELSVENVIAKLL 343


>gi|217972851|ref|YP_002357602.1| putative periplasmic protease [Shewanella baltica OS223]
 gi|217497986|gb|ACK46179.1| Peptidase S49 domain protein [Shewanella baltica OS223]
          Length = 330

 Score = 86.2 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 110/255 (43%), Gaps = 12/255 (4%)

Query: 31  VEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEAIF 87
            + ++  V  I  +G I+ ++   L E I  I    +    ++V++ S GG  +      
Sbjct: 79  DDTSTGKVFVIDFKGSIDAAEVASLREEISAILAIAEKGDEVVVNVESGGGMVHGYGLAS 138

Query: 88  RAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
             + ++ +   P+   V ++AAS GY+++C +N I AA  ++VGSIGV+ Q P     L 
Sbjct: 139 SQLDRLRQADIPLTVCVDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQLPNFNRLLK 198

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           K  +  +   +   K   + F E + +  Q  Q+ ++ ++  F   V + R  P    + 
Sbjct: 199 KHEIDYEQHTAGNFKRTLTVFGENSDEGRQKFQEELEETHVLFKAFVGKYR--PELDLVK 256

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           ++ G  W G +A ++GL+D +   ++V  SL A       R +            D    
Sbjct: 257 VATGEHWYGQQAIELGLVDAISTSDDVIMSLAA------ERTVYKMRYQVRKKLADKIAH 310

Query: 267 SISSLLEDTIPLMKQ 281
             S  +      + +
Sbjct: 311 GASLSVNAIFNRLIE 325


>gi|228962557|ref|YP_751249.2| putative periplasmic protease [Shewanella frigidimarina NCIMB 400]
          Length = 336

 Score = 86.2 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 98/250 (39%), Gaps = 16/250 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80
            +         V  I  +G I+ ++      E+   I    +DD    ++V++ S GG  
Sbjct: 81  AAEKQNLTKGKVFVIDFKGSIDANEVSSLRQEVTAIITIADKDDQ---VLVNVESGGGMV 137

Query: 81  YAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +        + +++     ++    ++AAS GY+++C +N + AA  ++VGSIGV+ Q P
Sbjct: 138 HGYGLASSQLDRLRQANIPLSICVDKVAASGGYMMACVANKVYAAPFAIVGSIGVIAQIP 197

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                L    +  +   +   K   + F E   +     Q  ++ ++  F   V   R  
Sbjct: 198 NFNRLLKNHDIDYEQHTAGDFKRTLTVFGENTDEGRAKFQQELEETHVLFKEFV--GRYR 255

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           P      ++ G  W G +A  +GLID V   ++V   L              +   K   
Sbjct: 256 PNMDIAKVATGEHWYGQQAIDLGLIDAVSTSDDVILDLVNTHQVIK----IQYQMKKKLA 311

Query: 260 FCDLKNLSIS 269
                 +S+S
Sbjct: 312 DKIAHGVSLS 321


>gi|114335029|gb|ABI72411.1| Peptidase S49, N-terminal domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 340

 Score = 86.2 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 98/250 (39%), Gaps = 16/250 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80
            +         V  I  +G I+ ++      E+   I    +DD    ++V++ S GG  
Sbjct: 85  AAEKQNLTKGKVFVIDFKGSIDANEVSSLRQEVTAIITIADKDDQ---VLVNVESGGGMV 141

Query: 81  YAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +        + +++     ++    ++AAS GY+++C +N + AA  ++VGSIGV+ Q P
Sbjct: 142 HGYGLASSQLDRLRQANIPLSICVDKVAASGGYMMACVANKVYAAPFAIVGSIGVIAQIP 201

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                L    +  +   +   K   + F E   +     Q  ++ ++  F   V   R  
Sbjct: 202 NFNRLLKNHDIDYEQHTAGDFKRTLTVFGENTDEGRAKFQQELEETHVLFKEFV--GRYR 259

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           P      ++ G  W G +A  +GLID V   ++V   L              +   K   
Sbjct: 260 PNMDIAKVATGEHWYGQQAIDLGLIDAVSTSDDVILDLVNTHQVIK----IQYQMKKKLA 315

Query: 260 FCDLKNLSIS 269
                 +S+S
Sbjct: 316 DKIAHGVSLS 325


>gi|307260458|ref|ZP_07542153.1| protease sohB [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306869861|gb|EFN01643.1| protease sohB [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 351

 Score = 86.2 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 105/231 (45%), Gaps = 12/231 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAAS 109
           +E+   I   +++D    +++ L SPGG  +        +Q+++     +T  V ++AAS
Sbjct: 124 REIDAVISLANKEDE---VLLRLESPGGVVHGYGLAASQLQRLRTHNIPLTVAVDKVAAS 180

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
            GY+++C +N IVAA  +++GS+GV+ Q P +   L K  + +  + +   K   +   E
Sbjct: 181 GGYMMACVANKIVAAPFAIIGSVGVVAQVPNIHRLLKKHEIDVDVMTAGEYKRTVTLVGE 240

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
              K  Q  Q  ++ ++  F + V+++R  P      ++ G  W G +A  + L+D +  
Sbjct: 241 NTEKGKQKFQQELEETHQLFKQFVAQNR--PQLDIEKIATGEHWFGKQALALDLVDEINT 298

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            +++  +          +++ +    +           +   +E+ I  + 
Sbjct: 299 SDDLLLNAIK------EKEVIELKFKQKKNLTQRLGEQVELSVENVIAKLL 343


>gi|110806591|ref|YP_690111.1| head-tail preconnector gp5 [Shigella flexneri 5 str. 8401]
 gi|110616139|gb|ABF04806.1| head-tail preconnector gp5 [Shigella flexneri 5 str. 8401]
 gi|333007221|gb|EGK26708.1| head-tail preconnector protein GP5 [Shigella flexneri K-218]
          Length = 501

 Score = 86.2 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 88/217 (40%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADTQVRGVLLDIDSPGGQATG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++  KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQLKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMGHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + +   K + + F  +  K  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYAGSHKVDGNQFESLPAKVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +  ++  ++ G    +  L D +    +    + A
Sbjct: 256 AVMG-TEAAVFEGQSGIEAELADELINASDAISVMAA 291


>gi|304411918|ref|ZP_07393529.1| Peptidase S49 domain protein [Shewanella baltica OS183]
 gi|307303314|ref|ZP_07583069.1| Peptidase S49 domain protein [Shewanella baltica BA175]
 gi|304349778|gb|EFM14185.1| Peptidase S49 domain protein [Shewanella baltica OS183]
 gi|306913674|gb|EFN44096.1| Peptidase S49 domain protein [Shewanella baltica BA175]
          Length = 338

 Score = 86.2 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 110/255 (43%), Gaps = 12/255 (4%)

Query: 31  VEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEAIF 87
            + ++  V  I  +G I+ ++   L E I  I    +    ++V++ S GG  +      
Sbjct: 87  DDTSTGKVFVIDFKGSIDAAEVASLREEISAILAIAEKGDEVVVNVESGGGMVHGYGLAS 146

Query: 88  RAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
             + ++ +   P+   V ++AAS GY+++C +N I AA  ++VGSIGV+ Q P     L 
Sbjct: 147 SQLDRLRQAEIPLTVCVDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQLPNFNRLLK 206

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           K  +  +   +   K   + F E + +  Q  Q+ ++ ++  F   V + R  P    + 
Sbjct: 207 KHEIDYEQHTAGNFKRTLTVFGENSDEGRQKFQEELEETHVLFKAFVGKYR--PELDLVK 264

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           ++ G  W G +A ++GL+D +   ++V  SL A       R +            D    
Sbjct: 265 VATGEHWYGQQAIELGLVDAISTSDDVIMSLAA------ERTVYKMRYQVRKKLADKIAH 318

Query: 267 SISSLLEDTIPLMKQ 281
             S  +      + +
Sbjct: 319 GASLSVNAIFNRLIE 333


>gi|307308725|ref|ZP_07588421.1| peptidase S49 [Sinorhizobium meliloti BL225C]
 gi|306900731|gb|EFN31342.1| peptidase S49 [Sinorhizobium meliloti BL225C]
          Length = 301

 Score = 85.8 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 90/213 (42%), Gaps = 14/213 (6%)

Query: 38  VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           +A I I G              +   + +  +++     D   A++  + S GG      
Sbjct: 79  IALIEIEGSLVNKGKWIGKSCGMTSYEGISAQVQDCIDRDDIKAVVFEVDSYGGEVTGAF 138

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
                I ++   KP I  + + A SAGYL++     +V  +T + GSIGV+  +  +  +
Sbjct: 139 DCAEQIFELSQVKPTIAVLTDHACSAGYLLASPCRQLVIPQTGICGSIGVISMHVDMSAW 198

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K G+ +  +K+   KA+ +P+  +    +Q     ++     F   V+  R     + 
Sbjct: 199 LAKEGLKVTILKAGEHKADFNPYEAIPDDVLQQELAELEELRVEFAATVARYRAGRLTQQ 258

Query: 205 LVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
             L ++ R++ G +A   GL D V    +V ++
Sbjct: 259 SALATEARVYRGQKAVDAGLADAVARPSQVLEA 291


>gi|293395939|ref|ZP_06640220.1| S49 family peptidase [Serratia odorifera DSM 4582]
 gi|291421437|gb|EFE94685.1| S49 family peptidase [Serratia odorifera DSM 4582]
          Length = 348

 Score = 85.8 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 118/270 (43%), Gaps = 18/270 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGS 79
           + S   + + P +  +  +G ++        +E+   +   + +D    +++ L SPGG 
Sbjct: 90  AKSGAAQASKPCLYVLDFKGSMDAHEVTSLREEISAVLAVATAEDE---VLLRLESPGGV 146

Query: 80  AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +        +++++     +T  V ++AAS GY+++C ++ IVAA  +++GSIGV+ Q 
Sbjct: 147 VHGYGLAASQLERLRKGGIRLTVAVDKVAASGGYMMACVADRIVAAPFAIIGSIGVVAQI 206

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P     L K  + ++   +   K   + F E   +     ++ ++ ++  F + V + R 
Sbjct: 207 PNFHRLLKKNDIDVELHTAGQFKRTLTLFGENTEQGRDKFREDLNETHELFKQFVHQQR- 265

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P      ++ G  W G +AK+ GLID VG  +++   +  +       ++      +  
Sbjct: 266 -PSLDIDSVATGEHWFGTQAKEKGLIDAVGTSDDLL--IAEM----ENHEVVGVRYSRRK 318

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
            + D    S +   +  +    Q   + L 
Sbjct: 319 RWVDRFTGSAAESADRLLLRWWQRGEKPLL 348


>gi|17975166|ref|NP_536361.1| putative capsid assembly protein/protease [Burkholderia phage
           phiE125]
 gi|17484027|gb|AAL40278.1|AF447491_5 gp5 [Burkholderia phage phiE125]
          Length = 301

 Score = 85.8 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 1/194 (0%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            +   + L   + +   D +   +++ + S GGSA     +   I+     KP+   V+ 
Sbjct: 78  PMTSYEGLRSAVNQAVADPAVEHIVLDIDSNGGSATGAFELADDIRAASLVKPITAIVNF 137

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
            A S GYLI+ A++ ++ + TS VGSIGV+  +  V    ++ G+ + SV +   K + +
Sbjct: 138 SAFSGGYLIAAAASKVIVSRTSGVGSIGVIANHLDVSKRDEQQGIKVTSVFAGDHKNDLT 197

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   ++ +++  +  +V +SY  FV  ++  R +          G I+ G +  + GL D
Sbjct: 198 PHEPLSDQSLTFLTSMVQNSYKQFVDAIANFRGLSTQAVKDTQAG-IFFGQKGVEAGLAD 256

Query: 226 VVGGQEEVWQSLYA 239
            V   +     + A
Sbjct: 257 SVETPQAAINRIAA 270


>gi|29653702|ref|NP_819394.1| putative periplasmic protease [Coxiella burnetii RSA 493]
 gi|153207278|ref|ZP_01946042.1| peptidase, S49 (protease IV) family [Coxiella burnetii 'MSU Goat
           Q177']
 gi|154707075|ref|YP_001425059.1| putative periplasmic protease [Coxiella burnetii Dugway 5J108-111]
 gi|165918692|ref|ZP_02218778.1| peptidase, S49 (protease IV) family [Coxiella burnetii RSA 334]
 gi|212218185|ref|YP_002304972.1| putative periplasmic protease [Coxiella burnetii CbuK_Q154]
 gi|29540965|gb|AAO89908.1| non-proteolytic protein, peptidase family S49 [Coxiella burnetii
           RSA 493]
 gi|120576766|gb|EAX33390.1| peptidase, S49 (protease IV) family [Coxiella burnetii 'MSU Goat
           Q177']
 gi|154356361|gb|ABS77823.1| non-proteolytic protein, peptidase family S49 [Coxiella burnetii
           Dugway 5J108-111]
 gi|165917627|gb|EDR36231.1| peptidase, S49 (protease IV) family [Coxiella burnetii RSA 334]
 gi|212012447|gb|ACJ19827.1| non-proteolytic protein, peptidase family S49 [Coxiella burnetii
           CbuK_Q154]
          Length = 338

 Score = 85.8 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 112/280 (40%), Gaps = 18/280 (6%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS------QELIERIERIS 61
           IK +Y +   +           +  +    +  +  +G I  S      +E+   +   +
Sbjct: 69  IKDKYELKRFLKSQKKEKKKKPNTTEAKKRIFVLNFQGDIRASAVCALREEITAVLTTAT 128

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNI 120
           RDD    +++ L S GG  +        +Q++      ++  + ++AAS GYL++C ++ 
Sbjct: 129 RDDE---VLLRLESGGGVVHGYGLAASQLQRIKDAHIKLVIAIDKVAASGGYLMACVADR 185

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           I+AA  ++VGSIGVL Q P    +L K  +  + V +   K   + F E   K    M++
Sbjct: 186 IIAAPFAIVGSIGVLAQLPNFHRYLRKKYIDFEQVMAGDYKRTLTLFGENTEKGRAKMKE 245

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
            V+ ++  F   + E R         ++ G  W  ++A  + L+D +   ++   +    
Sbjct: 246 EVEETHTLFKSFIKEHRQ--EVDVEQIATGEHWYASKALDLRLVDELKTSDDYLLAASQ- 302

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
                   + +    +     +  + + S      +  + 
Sbjct: 303 -----NYDLFEVQYKRKPPLAERVSHNASRAYHQLLSGLM 337


>gi|167470520|ref|ZP_02335224.1| peptidase, S49 family protein [Yersinia pestis FV-1]
          Length = 321

 Score = 85.8 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 102/213 (47%), Gaps = 6/213 (2%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATA-LIVSLSSPGGSAYA 82
           + S  V    P +  I  +G I   +   L E I  I    +A   +++ L SPGG  + 
Sbjct: 90  AKSGAVAAVKPCLYVIDFKGSIGAQEVSSLREEISAILAVATAQDEVLLRLESPGGVVHG 149

Query: 83  GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + +++ R   +T  V ++AAS GY+++C ++ I+ A  +++GSIGV+ Q P  
Sbjct: 150 YGLAASQLARLRQRGIRLTVAVDKVAASGGYMMACVADRIICAPFAIIGSIGVVAQIPNF 209

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  + ++   +   K   + F E   +  +  ++ ++ ++  F + V + R  P 
Sbjct: 210 HRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVQQQR--PS 267

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
                ++ G  W G +AK+ GL+D +G  +++ 
Sbjct: 268 LDIDAVATGEHWFGTQAKEKGLVDAIGTSDDLL 300


>gi|87242919|gb|ABD33956.1| protease IV [uncultured bacterium]
          Length = 172

 Score = 85.8 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 91/170 (53%), Gaps = 6/170 (3%)

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYPYVKPF 144
           ++R + ++K +KP I  + + AAS GY ISCA+N I A  T+L GSIG+    Y   K F
Sbjct: 1   MWREVVRLKEKKPAIVSMGDYAASGGYYISCAANRIFADPTTLTGSIGIFGMMYSGEKLF 60

Query: 145 LDKLGVSIKSVKSSPMKA-----EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            + LG++   VK++ M        P     +N    ++MQ+ V+  Y  FV   +E R +
Sbjct: 61  TETLGLNFDVVKTNKMADLGASLGPVLTRPLNASEQELMQNYVNRGYKLFVNRCAEGRKM 120

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
             +    +++GR+WTGA AK +GL+D +GG ++   +       ++   I
Sbjct: 121 STEAIEKVAEGRVWTGAMAKDLGLVDQLGGIDKALNAAATQAGIENYSII 170


>gi|289627176|ref|ZP_06460130.1| putative periplasmic protease [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289648724|ref|ZP_06480067.1| putative periplasmic protease [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330867981|gb|EGH02690.1| putative inner membrane peptidase [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 340

 Score = 85.8 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 104/274 (37%), Gaps = 28/274 (10%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGG 78
                    +    V  +   G I+ S     +  I  +  ++ D     +++ L S GG
Sbjct: 79  ALKKEKKQAEPKSRVYVLDFDGDIKASATESMRHEITALLTLATDKD--EVVLRLESGGG 136

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
             ++       + +++     +T    ++AAS GY+++C  N I++A  +++GSIGV+ Q
Sbjct: 137 MVHSYGLASSQLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQ 196

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
            P V   L K  +  + + +   K   + F E   K  +  Q  +D ++  F   V+  R
Sbjct: 197 LPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASYR 256

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
             P      ++ G +W G  A    L+D +   +E    L     D  +  +        
Sbjct: 257 --PQLSIDEVATGEVWLGMAAVDKLLVDELKTSDE---YLAERAKDADVFHLHYLQRK-- 309

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
                         L++ + +   T    L A W
Sbjct: 310 -------------SLQERMGMAAATSADQLAAKW 330


>gi|187932068|ref|YP_001892053.1| putative periplasmic protease [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712977|gb|ACD31274.1| peptidase family S49 protein [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 338

 Score = 85.8 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 104/252 (41%), Gaps = 14/252 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYA 82
              +     +  I  +G I+ SQ      E+   +   + +D    +IV + SPGG    
Sbjct: 86  DKQDKPKQKIFVINFKGDIDASQVENLRNEVSAILAVANTEDE---IIVRIDSPGGVVNG 142

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYV 141
                  +++++     +T   +  A++G  +  A  + I+AA  ++VGSIGV+   P +
Sbjct: 143 YGFAAAQLERIRQAGINLTVCIDQVAASGGYMMSAVAHKIIAAPFAIVGSIGVVGTIPNI 202

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
           +  L+K G++++   S   K   +       +     +  ++S +  F + +   R  P 
Sbjct: 203 RELLEKNGINVEMHTSGEYKRTLTTVGVNTEEGRNKFKQDLESIHQLFKKHILVYR--PS 260

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +A ++GL+D +   ++    L  L    ++ ++      +  +  
Sbjct: 261 LDIDKVATGEYWFGKDALELGLVDKIQTYDDYLIDL--LKKQHNVYEVSYVIKKEKGFLR 318

Query: 262 DLKNLSISSLLE 273
              ++   ++  
Sbjct: 319 SKFSMLKRAITN 330


>gi|332760042|gb|EGJ90342.1| head-tail preconnector protein GP5 [Shigella flexneri 4343-70]
          Length = 501

 Score = 85.8 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 88/217 (40%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADTQVRGVLLDIDSPGGQATG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++  KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQLKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMGHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + +   K + + F  +  K  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYAGSHKVDGNQFESLPAKVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +  ++  ++ G    +  L D +    +    + A
Sbjct: 256 AVMG-TEAAVFEGQSGIEAELADELINASDAISVMAA 291


>gi|330875134|gb|EGH09283.1| putative inner membrane peptidase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 340

 Score = 85.8 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 102/262 (38%), Gaps = 15/262 (5%)

Query: 33  DNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           +    V  +   G I+ S     +  I  +  ++ D     +++ L S GG  ++     
Sbjct: 88  EPKARVYVLDFDGDIKASATESMRHEITALLTLATDKD--EVVLRLESGGGMVHSYGLAS 145

Query: 88  RAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
             + +++     +T    ++AAS GY+++C  N I++A  +++GSIGV+ Q P V   L 
Sbjct: 146 SQLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQLPNVNRLLK 205

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           K  +  + + +   K   + F E   K  +  Q  +D ++  F   V+  R  P      
Sbjct: 206 KHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASYR--PQLSIDE 263

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           ++ G +W G  A    L+D +   +E             +  +      +      +   
Sbjct: 264 VATGEVWLGMAAVDKLLVDELKTSDEYLAERAKQADVFHLHYV-----QRKSLQERMGMA 318

Query: 267 SISSLLEDTIPLMKQTKVQGLW 288
           + +S  +       +   Q  W
Sbjct: 319 AATSADQLATKWWGRLTQQRFW 340


>gi|16273569|ref|NP_439824.1| putative periplasmic protease [Haemophilus influenzae Rd KW20]
 gi|260581275|ref|ZP_05849093.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|1174392|sp|P45315|SOHB_HAEIN RecName: Full=Probable protease sohB
 gi|1574534|gb|AAC23328.1| protease, putative (sohB) [Haemophilus influenzae Rd KW20]
 gi|260092102|gb|EEW76047.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
          Length = 353

 Score = 85.8 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 102/227 (44%), Gaps = 13/227 (5%)

Query: 38  VARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
           V  +   G I  S+      E+   +     +D    +++ L SPGG  +        + 
Sbjct: 106 VYVLDFCGDISASETTALREEISAILNVAKSEDE---VLLRLESPGGIVHNYGFAASQLS 162

Query: 92  KVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++K +   +T  V ++AAS GY+++C ++ IV+A  +++GSIGV+ Q P V   L K  V
Sbjct: 163 RLKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDV 222

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
            +  + +   K   +   E   K  Q  Q  ++ ++  F + VS++R         ++ G
Sbjct: 223 DVDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATG 280

Query: 211 RIWTGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256
             W G +A  + L+D +   +++  + +    V     ++K     K
Sbjct: 281 EHWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKK 327


>gi|190570851|ref|YP_001975209.1| putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357123|emb|CAQ54534.1| putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 353

 Score = 85.8 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 99/211 (46%), Gaps = 14/211 (6%)

Query: 30  HVEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSP 76
            V  N    A IAI G              +   +++ E+I +   D S   +I+ + SP
Sbjct: 39  TVNQNIEKTAVIAIHGILTKKPGAFDVFLGMTSYEQIEEQITQALADSSIETIILEIDSP 98

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GG       +   I + + +K +I   ++ A SA Y I+ ++  +  + TS VGSIGV+ 
Sbjct: 99  GGEVNGIFDLADFIYESRAKKRIIAIANDDAYSAAYAIASSAEKVFVSRTSGVGSIGVIA 158

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
            +     F +K G+   +V +   K + +P   +  ++++ +Q  VD  Y  FV+L++ +
Sbjct: 159 SHIDQSGFDEKCGIKYTTVFAGSRKNDLNPHEPMTSESLESLQKEVDRLYEMFVQLIARN 218

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
           RN+  +       G  + G +A ++GL D +
Sbjct: 219 RNLSIEAIKSTEAGLYF-GEKAVEIGLADGM 248


>gi|156933742|ref|YP_001437658.1| putative periplasmic protease [Cronobacter sakazakii ATCC BAA-894]
 gi|156531996|gb|ABU76822.1| hypothetical protein ESA_01568 [Cronobacter sakazakii ATCC BAA-894]
          Length = 349

 Score = 85.8 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 53/268 (19%), Positives = 110/268 (41%), Gaps = 18/268 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYA 82
                   P +  +  +G I+  +  +  +       ++    A  ++V L SPGG  + 
Sbjct: 93  GDAAPAGKPTLYVLDFKGSIDAHE--VSALREEVTAVLAVAKPADEVLVRLESPGGVVHG 150

Query: 83  GEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  +Q+++ R+      V ++AAS GY+++C +N IVAA  +++GSIGV+ Q P  
Sbjct: 151 YGLAASQLQRLRERQIPLTIAVDKVAASGGYMMACVANNIVAAPFAIIGSIGVVAQIPNF 210

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L +  + I+   +   K   +   E   +  +  ++ ++ ++H F   V   R  P 
Sbjct: 211 NRLLKRNDIDIELHTAGQYKRTLTLLGENTEEGREKFREDLNETHHLFKEFVHSMR--PS 268

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE-VWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                ++ G  W G +AK+ GL+D +   ++ +   +          ++      +    
Sbjct: 269 LDIDAVATGEHWYGVQAKEKGLVDEISTSDDLIIARMAER-------EVVSLRYMQRKRL 321

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288
            D    S +  L+  +    Q   + L 
Sbjct: 322 MDRFTGSAAQSLDRLLLRWWQRGQKPLL 349


>gi|254448773|ref|ZP_05062230.1| probable protease SohB [gamma proteobacterium HTCC5015]
 gi|198261614|gb|EDY85902.1| probable protease SohB [gamma proteobacterium HTCC5015]
          Length = 354

 Score = 85.8 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 110/262 (41%), Gaps = 18/262 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81
            S        V  +   G I+ S      + +   +     +D    ++V L S GG  +
Sbjct: 96  KSDDPAQRRRVFVLDFDGDIKASAVDHLREAVSGVLTMARSEDE---VVVRLESAGGMVH 152

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           +       + +++ ++  +T    ++AAS GY+++C +N IVAA  +++GSIGV+ Q P 
Sbjct: 153 SYGLASSQLLRIRQKELPLTICVDKVAASGGYMMACVANHIVAAPFAILGSIGVVAQIPN 212

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E   K  +  ++ ++ ++  F   V E+R   
Sbjct: 213 FHRVLKKHDIDFELITAGEHKRTLTMFGENTDKGREKFREDIEDTHGLFKDFVQENRPAV 272

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G +W G++A +  LID +   +E   +         +R +      +    
Sbjct: 273 P--IDAVATGEVWFGSKALEQQLIDKIATSDEYLMNACEDADVYEVRFV------EKKGL 324

Query: 261 CDLKNLSISSLLEDTIPLMKQT 282
            +   +SI +  E  +  + + 
Sbjct: 325 QERLGISIQTAFERVVGRLIEA 346


>gi|71278653|ref|YP_267936.1| putative periplasmic protease [Colwellia psychrerythraea 34H]
 gi|71144393|gb|AAZ24866.1| sohB protein, peptidase U7 family [Colwellia psychrerythraea 34H]
          Length = 349

 Score = 85.8 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 104/262 (39%), Gaps = 16/262 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
               E +  HV  +   G I        +E +  I  +++ +    + V L S GG  + 
Sbjct: 93  GEDKEPSKSHVFVVDFNGSIDAKEVSSLREEVSAILSVAKPED--EVFVRLESGGGMVHG 150

Query: 83  GEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + +++         V ++AAS GY+++C +N I++A  +++GSIGV+ Q P  
Sbjct: 151 YGLASSQLDRIRQHNIPLTVSVDKVAASGGYMMACVANNIISAPFAILGSIGVIAQVPNF 210

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  +  +   +   K   + F E   K  +   + ++ ++  F   VSE R  P 
Sbjct: 211 NKLLKKHDIDFEQFTAGEFKRTVTMFGENTEKGKEKFIEELEETHVLFKNFVSERR--PS 268

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
              + ++ G  W G  A ++GL+D +   ++  Q            K+            
Sbjct: 269 LDIVKVATGEHWFGTTALELGLVDSIQTSDDYLQ------GKSKSHKVVAIKYEVKKGLA 322

Query: 262 DLKNLSISSLLEDTIPLMKQTK 283
           +  + + S   E  +  + Q  
Sbjct: 323 EKFSKAASLSAESFLGKLIQRN 344


>gi|213019344|ref|ZP_03335151.1| putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995453|gb|EEB56094.1| putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 340

 Score = 85.8 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 101/218 (46%), Gaps = 14/218 (6%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATAL 69
           ++      V  N    A IAI G              +   +++ E+I +   D S   +
Sbjct: 19  IFKKIKHAVNQNIEKTAVIAIHGILTKKPGAFDVFLGMTSYEQIEEQITQALADSSIETI 78

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           I+ + SPGG       +   I + + +K +I   ++ A SA Y I+ ++  +  + TS V
Sbjct: 79  ILEIDSPGGEVNGIFDLADFIYESRAKKRIIAIANDDAYSAAYAIASSAEKVFVSRTSGV 138

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+  +     F +K G+   +V +   K + +P   +  ++++ +Q  VD  Y  F
Sbjct: 139 GSIGVIASHIDQSGFDEKCGIKYTTVFAGSRKNDLNPHEPMTSESLESLQKEVDRLYEMF 198

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
           V+L++ +RN+  +       G  + G +A ++GL D +
Sbjct: 199 VQLIARNRNLSIEAIKSTEAGLYF-GEKAVEIGLADGM 235


>gi|145629227|ref|ZP_01785026.1| predicted inner membrane peptidase [Haemophilus influenzae 22.1-21]
 gi|145639162|ref|ZP_01794769.1| predicted inner membrane peptidase [Haemophilus influenzae PittII]
 gi|144978730|gb|EDJ88453.1| predicted inner membrane peptidase [Haemophilus influenzae 22.1-21]
 gi|145271724|gb|EDK11634.1| predicted inner membrane peptidase [Haemophilus influenzae PittII]
 gi|309750742|gb|ADO80726.1| Probable protease SohB [Haemophilus influenzae R2866]
          Length = 353

 Score = 85.8 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 103/226 (45%), Gaps = 11/226 (4%)

Query: 38  VARIAIRGQIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
           V  +   G I  S+       I  I  +++ +    +++ L SPGG  +        + +
Sbjct: 106 VYVLDFCGDISASETTALREEISAILNVAKPED--EVLLRLESPGGIVHNYGFAASQLSR 163

Query: 93  VKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           +K +   +T  V ++AAS GY+++C ++ IV+A  +++GSIGV+ Q P V   L K  V 
Sbjct: 164 LKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDVD 223

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
           +  + +   K   +   E   K  Q  Q  ++ ++  F + VS++R         ++ G 
Sbjct: 224 VDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATGE 281

Query: 212 IWTGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256
            W G +A  + L+D +   +++  + +    V     ++K     K
Sbjct: 282 HWFGQQAFALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKK 327


>gi|217977711|ref|YP_002361858.1| peptidase S49 [Methylocella silvestris BL2]
 gi|217503087|gb|ACK50496.1| peptidase S49 [Methylocella silvestris BL2]
          Length = 445

 Score = 85.8 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 91/225 (40%), Gaps = 14/225 (6%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALI 70
             +  S        +ARI I G++                + +  ++     D    A++
Sbjct: 54  AAAAGSSGYQLQDGLARIPILGELVNRAASLAAAAGFTSYESIGAQLRAAVADPGVRAIL 113

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + + SPGG A         +++  N KPV+  V+ +A SA Y I+  ++ IV   +S +G
Sbjct: 114 LEIDSPGGEASGAMEAGALVREAANAKPVVAFVNGLAGSAAYAIASGASNIVVTPSSSLG 173

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           SIGV+  +      + + G+    + +   K + +    + P A   +Q  +D  Y  FV
Sbjct: 174 SIGVVLLHLDRSEAIARAGLKPTLISAGAHKTDGTSLHALAPDARARIQASIDELYDLFV 233

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           + V+  R +          G  + GA A  VGL D  G  +    
Sbjct: 234 KTVASHRGLTEAVVRATEAGL-FMGARAVSVGLADETGDFKTAMA 277


>gi|71733789|ref|YP_274809.1| periplasmic protease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257487854|ref|ZP_05641895.1| putative periplasmic protease [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|71554342|gb|AAZ33553.1| peptidase, U7 family [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320328970|gb|EFW84969.1| putative periplasmic protease [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330985296|gb|EGH83399.1| putative inner membrane peptidase [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331008563|gb|EGH88619.1| putative inner membrane peptidase [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 340

 Score = 85.8 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 102/271 (37%), Gaps = 15/271 (5%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGG 78
                    +    V  +   G I+ S     +  I  +  ++ D     +++ L S GG
Sbjct: 79  ALKKEKKQAEPKSRVYVLDFDGDIKASATESMRHEITALLTLATDKD--EVVLRLESGGG 136

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
             ++       + +++     +T    ++AAS GY+++C  N I++A  +++GSIGV+ Q
Sbjct: 137 MVHSYGLASSQLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQ 196

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
            P V   L K  +  + + +   K   + F E   K  +  Q  +D ++  F   VS  R
Sbjct: 197 LPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVSSYR 256

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
             P      ++ G +W G  A    L+D +   +E             +  +      + 
Sbjct: 257 --PQLSIDEVATGEVWLGMAAVDKLLVDELKTSDEYLAERAKDADVFHLHYV-----QRK 309

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                +   + +S  +       +   Q  W
Sbjct: 310 SLQERMGMAAATSADQLATKWWGRLTQQRFW 340


>gi|326570109|gb|EGE20154.1| putative periplasmic protease [Moraxella catarrhalis BC8]
          Length = 325

 Score = 85.4 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 107/273 (39%), Gaps = 16/273 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81
           S+        +  +   G I+ S      +E+   I      +    +++ L S GG  +
Sbjct: 62  STDDHTQKAAIYVLDFDGDIKASAVAHLREEISAIISVA---NRGDEVVLRLESGGGQVH 118

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           A       + ++K     +   V ++AAS GY+++C ++ I+A++ +++GSIGV+ Q P 
Sbjct: 119 AYGLAAAQLVRIKEAGLKLTICVDKIAASGGYMMACTADKIIASDFAVIGSIGVVSQLPN 178

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
              FL K  V  +   +   K   + F E + +     Q  ++  +  F   + + R  P
Sbjct: 179 FHEFLKKHDVQFEQFTAGEYKRTVTIFGENDDEDRAKHQADIERIHELFKGFIHKYR--P 236

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G +W G +A ++GLID +G  +     L           +   + P     
Sbjct: 237 QLDLERVATGEVWFGEDALELGLIDEIGTSD---AYLLDQLKACEAYLLHSRSKP-TLAE 292

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
                  + S + D I        Q L     P
Sbjct: 293 KIGLAEQLGSSVTDVIGQTGNLLGQALAKFSRP 325


>gi|165975466|ref|YP_001651059.1| putative periplasmic protease [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165875567|gb|ABY68615.1| serine protease [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 351

 Score = 85.4 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 105/231 (45%), Gaps = 12/231 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAAS 109
           +E+   I   +++D    +++ L SPGG  +        +Q+++     +T  V ++AAS
Sbjct: 124 REIDAVISLANKEDE---VLLRLESPGGVVHGYGLAASQLQRLRTHNIPLTVAVDKVAAS 180

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
            GY+++C +N IVAA  +++GS+GV+ Q P +   L K  + +  + +   K   +   E
Sbjct: 181 GGYMMACVANKIVAAPFAIIGSVGVVAQVPNIHRLLKKHEIDVDVMTAGEYKRTVTLVGE 240

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
              K  Q  Q  ++ ++  F + V+++R  P      ++ G  W G +A  + L+D +  
Sbjct: 241 NTEKGKQKFQQELEETHQLFKQFVAQNR--PQLDIEKIATGEHWFGKQALALDLVDEINT 298

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            +++  +          +++ +    +           +   +E+ I  + 
Sbjct: 299 SDDLLLNAIK------EKEVIELKFKQKKNLTQRLGEQVELSVENVIAKLL 343


>gi|307253763|ref|ZP_07535617.1| protease sohB [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258220|ref|ZP_07539963.1| protease sohB [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306863247|gb|EFM95187.1| protease sohB [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867680|gb|EFM99525.1| protease sohB [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 351

 Score = 85.4 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 105/231 (45%), Gaps = 12/231 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAAS 109
           +E+   I   +++D    +++ L SPGG  +        +Q+++     +T  V ++AAS
Sbjct: 124 REIDAVISLANKEDE---VLLRLESPGGVVHGYGLAASQLQRLRTHNIPLTVAVDKVAAS 180

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
            GY+++C +N IVAA  +++GS+GV+ Q P +   L K  + +  + +   K   +   E
Sbjct: 181 GGYMMACVANKIVAAPFAIIGSVGVVAQVPNIHRLLKKHEIDVDVMTAGEYKRTVTLVGE 240

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
              K  Q  Q  ++ ++  F + V+++R  P      ++ G  W G +A  + L+D +  
Sbjct: 241 NTEKGKQKFQQELEEAHQLFKQFVAQNR--PQLDIEKIATGEHWFGKQALALDLVDEINT 298

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            +++  +          +++ +    +           +   +E+ I  + 
Sbjct: 299 SDDLLLNAIK------EKEVIELKFKQKKNLTQRLGEQVELSVENVIAKLL 343


>gi|329894909|ref|ZP_08270708.1| peptidase S49 [gamma proteobacterium IMCC3088]
 gi|328922638|gb|EGG29973.1| peptidase S49 [gamma proteobacterium IMCC3088]
          Length = 351

 Score = 85.4 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 104/250 (41%), Gaps = 12/250 (4%)

Query: 36  PHVARIAIRGQIEDS--QELIERIERISRDD-SATALIVSLSSPGGSAYAGEAIFRAIQK 92
           P V  +   G I+ S  + L + I  +  +      +I+ L SPGG  ++       + +
Sbjct: 103 PRVFVMDFDGDIKASAVEGLRKEISTLVANKAEGDTVILRLESPGGMVHSYGLAASQLDR 162

Query: 93  VKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           +KN     I  V  +AAS GY+++C ++ I AA  S++GSIGV+ Q P V   L K  V 
Sbjct: 163 IKNAGIKLIVSVDAVAASGGYMMACVADEIAAAPFSVIGSIGVVAQVPNVHRLLKKNDVD 222

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
           ++ + +   K   +   E   +  Q   + ++S++  F   V E R  P      ++ G 
Sbjct: 223 VEILTAGKYKRTLTVLGENTEEGRQKFIEDLESTHDLFKAFVQEHR--PNLDIEAVATGE 280

Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           IW G EA   GL+D +   +++              ++   +  +     +    +    
Sbjct: 281 IWYGKEAVNKGLVDRIATSDDLILEALQTS------QVFRVSYEQKRTLAERLGFAAEQG 334

Query: 272 LEDTIPLMKQ 281
           +      +  
Sbjct: 335 VVKAFEQLWA 344


>gi|260899603|ref|ZP_05907998.1| putative protease SohB [Vibrio parahaemolyticus AQ4037]
 gi|308106905|gb|EFO44445.1| putative protease SohB [Vibrio parahaemolyticus AQ4037]
          Length = 345

 Score = 85.4 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 102/231 (44%), Gaps = 12/231 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
            S      PH+  +   G I+        +E+   +      D    +++ L S GG  +
Sbjct: 97  GSLDSKREPHLFVLDFNGSIDAKEVGSLREEITAILAVAREGDE---VLLRLESGGGMVH 153

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P 
Sbjct: 154 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPN 213

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E   KA    +  ++ ++  F   + E R  P
Sbjct: 214 FNKLLKKHDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHVLFKDFIRERR--P 271

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
             +   ++ G  W G +AK++GL+D +   +++  +        ++  ++ 
Sbjct: 272 SLELEKVATGEHWFGTQAKELGLVDEISTSDDLVVAACKEKTVLAVHYVQK 322


>gi|183599262|ref|ZP_02960755.1| hypothetical protein PROSTU_02723 [Providencia stuartii ATCC 25827]
 gi|188021494|gb|EDU59534.1| hypothetical protein PROSTU_02723 [Providencia stuartii ATCC 25827]
          Length = 348

 Score = 85.4 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 105/249 (42%), Gaps = 16/249 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGS 79
           + +       P +  +  +G ++  +      E+   +    +DD    +++ L SPGG 
Sbjct: 90  AKAGQSTVKKPCLYVLDFKGSMDAREVGSLREEISAILAVAEQDDE---VLLRLESPGGM 146

Query: 80  AYAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +        + ++K +       V ++AAS GY+++C ++ IVAA  +++GSIGV+ Q 
Sbjct: 147 VHGYGLAASQLSRLKEKNIPLTIAVDKVAASGGYMMACIASKIVAAPFAIIGSIGVVAQV 206

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P +   L K  V ++   +   K   +   E   +  +   + ++ ++  F + V  +R 
Sbjct: 207 PNIHRLLKKHDVDVELHTAGEYKRTLTMLGENTEQGRKKFIEDLNETHELFKQFVHHNR- 265

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P      ++ G  W G +A   GLID +G  +++  S        S      +   K  
Sbjct: 266 -PSLDIDAVATGEYWYGTQALDKGLIDQIGVSDDIIISAIETKEIIS----IRYTQGKKM 320

Query: 259 WFCDLKNLS 267
                 ++S
Sbjct: 321 LERFTGSMS 329


>gi|307249207|ref|ZP_07531204.1| protease sohB [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306858731|gb|EFM90790.1| protease sohB [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 351

 Score = 85.4 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 105/231 (45%), Gaps = 12/231 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAAS 109
           +E+   I   +++D    +++ L SPGG  +        +Q+++     +T  V ++AAS
Sbjct: 124 REIDAVISLANKEDE---VLLRLESPGGVVHGYGLAASQLQRLRTHNIPLTVAVDKVAAS 180

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
            GY+++C +N IVAA  +++GS+GV+ Q P +   L K  + +  + +   K   +   E
Sbjct: 181 GGYMMACVANKIVAAPFAIIGSVGVVAQVPNIHRLLKKHEIDMDVMTAGEYKRTVTLVGE 240

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
              K  Q  Q  ++ ++  F + V+++R  P      ++ G  W G +A  + L+D +  
Sbjct: 241 NTKKGKQKFQQELEETHQLFKQFVAQNR--PQLDIEKIATGEHWFGKQALALDLVDEINT 298

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            +++  +          +++ +    +           +   +E+ I  + 
Sbjct: 299 SDDLLLNAIK------EKEVIELKFKQKKNLTQRLGEQVELSVENVIAKLL 343


>gi|126174900|ref|YP_001051049.1| putative periplasmic protease [Shewanella baltica OS155]
 gi|125998105|gb|ABN62180.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Shewanella
           baltica OS155]
          Length = 338

 Score = 85.4 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 110/255 (43%), Gaps = 12/255 (4%)

Query: 31  VEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEAIF 87
            + ++  V  I  +G I+ ++   L E I  I    +    ++V++ S GG  +      
Sbjct: 87  DDTSTGKVFVIDFKGSIDAAEVASLREEISAILAIAEKGDEVVVNVESGGGMVHGYGLAS 146

Query: 88  RAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
             + ++ +   P+   V ++AAS GY+++C +N I AA  ++VGSIGV+ Q P     L 
Sbjct: 147 SQLDRLRQAEIPLTVCVDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQLPNFNRLLK 206

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           K  +  +   +   K   + F E + +  Q  Q+ ++ ++  F   V + R  P    + 
Sbjct: 207 KHEIDYEQHTAGNFKRTLTVFGENSDEGRQKFQEELEETHILFKAFVGKYR--PELDLVK 264

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           ++ G  W G +A ++GL+D +   ++V  SL A       R +            D    
Sbjct: 265 VATGEHWYGQQAIELGLVDAISTSDDVIMSLAA------ERTVYKMRYQVRKKLADKIAH 318

Query: 267 SISSLLEDTIPLMKQ 281
             S  +      + +
Sbjct: 319 GASLSVNAIFNRLIE 333


>gi|88811913|ref|ZP_01127166.1| Peptidase S49 [Nitrococcus mobilis Nb-231]
 gi|88790797|gb|EAR21911.1| Peptidase S49 [Nitrococcus mobilis Nb-231]
          Length = 329

 Score = 85.4 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 102/258 (39%), Gaps = 18/258 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSA 80
            +S    + P +  +  +G +  S      +E+   +      D    +++ L S GG  
Sbjct: 82  ANSKDTSDRPRLFILDFQGDLRASATESLREEISAILTAARPQDR---VLLRLESAGGLV 138

Query: 81  YAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +        + +++ R   +   +  +AAS GYL++  ++ +VAA  ++VGSIGV+ Q P
Sbjct: 139 HNYGLAASQLIRLRKRGIHLTISIDRVAASGGYLMASVADCLVAAPFAIVGSIGVIAQVP 198

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                L K  V  +   +   K   + F E    A    ++ +   +  F   ++  R  
Sbjct: 199 NFHRVLKKHEVDFELHTAGEFKRTLTLFGENTDAARAKFREELAEIHQSFKEHIARYR-- 256

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           P  +   ++ G  W G  A ++GL+D +G  ++   S           ++      +   
Sbjct: 257 PNVEINRIATGEYWLGERACELGLVDELGTSDDFILSRLE------TMELISLRFRRRER 310

Query: 260 FCDLKNLSISSLLEDTIP 277
                 L   SLL+  + 
Sbjct: 311 MTRRLALGFESLLKRLMG 328


>gi|307944694|ref|ZP_07660033.1| peptidase S49 [Roseibium sp. TrichSKD4]
 gi|307772121|gb|EFO31343.1| peptidase S49 [Roseibium sp. TrichSKD4]
          Length = 428

 Score = 85.4 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 16/223 (7%)

Query: 33  DNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGS 79
             S  VA I + G +                  L+E +E         A+++ +   GG 
Sbjct: 69  VTSEGVAVIRVSGALSRTSRGWHRECGYMSYPALLETVEEAVTHPGVKAVLLEIDCYGGP 128

Query: 80  AYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           +   E   RA++    ++ KP+   ++E A SAG+ I  A++ I  A T L GSIGV+  
Sbjct: 129 SQGLEDTARAMRDAAEQSGKPLWAHINEAALSAGFGIGSAASEISIARTGLAGSIGVIAM 188

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
              V    +K GV     K+   K + SPF+ ++  A   +Q  VD     F ++V++ R
Sbjct: 189 VQDVSGAAEKSGVKYHVFKAGAAKDDASPFTAMSEDAAARIQADVDGMNDDFCQMVADHR 248

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
            +  D    L   +I+ G +A   GL+D +    ++   L A 
Sbjct: 249 GMKKDAVAGL-QAQIFRGEKAVAAGLVDQMEPMRDMLARLTAK 290


>gi|255029400|ref|ZP_05301351.1| U7 family peptidase [Listeria monocytogenes LO28]
          Length = 131

 Score = 85.4 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 70/122 (57%)

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
             I  A++ +L GS+GV+ Q       + KLGVS  ++KS   K   S    +     ++
Sbjct: 7   PPINFASKETLTGSLGVIMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKI 66

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           MQ ++D SY+ FV++V++ R +  ++   ++DGRI+ G +AK+ GLID  G QE+  ++L
Sbjct: 67  MQSMIDDSYNEFVKVVAQGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALEAL 126

Query: 238 YA 239
             
Sbjct: 127 KK 128


>gi|153816961|ref|ZP_01969628.1| sohB protein, peptidase U7 family [Vibrio cholerae NCTC 8457]
 gi|126512548|gb|EAZ75142.1| sohB protein, peptidase U7 family [Vibrio cholerae NCTC 8457]
          Length = 255

 Score = 85.4 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 107/260 (41%), Gaps = 16/260 (6%)

Query: 35  SPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
            PH+  +   G I        +E +  I  +++      +++ L + GG  +        
Sbjct: 6   DPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHGYGLASSQ 63

Query: 90  IQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
           + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P     L K 
Sbjct: 64  LDRLKAAGLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNFHKLLKKN 123

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
            +  + + +   K   + F E   KA +  +  ++ ++  F   + E R  P      ++
Sbjct: 124 DIEFEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHQLFKDFIREHR--PALDLDKVA 181

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
            G  W G +AK +GL+D +   +++  +            +  +   K     D      
Sbjct: 182 TGEHWFGTQAKALGLVDEIQTSDDLIVAACK----SKTVLLLRYTQKKK--LADKLAGVA 235

Query: 269 SSLLEDTIPLMKQTKVQGLW 288
               ++ +  +     + L 
Sbjct: 236 GDAADNVLLKLISRGQRPLV 255


>gi|330982181|gb|EGH80284.1| putative inner membrane peptidase [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 340

 Score = 85.4 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 101/272 (37%), Gaps = 17/272 (6%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPG 77
                    +    V  +   G I+ S       E+   +   +  D    +++ L S G
Sbjct: 79  ALKKEKKQAEPKARVYVLDFDGDIKASATESMRHEITALLTLATDRDE---VVLRLESGG 135

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           G  ++       + +++     +T    ++AAS GY+++C  N I++A  +++GSIGV+ 
Sbjct: 136 GMVHSYGLASSQLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVA 195

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
           Q P V   L K  +  + + +   K   + F E   K  +  Q  +D ++  F   V+  
Sbjct: 196 QLPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASY 255

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           R  P      ++ G +W G  A    L+D +   +E             +  +      +
Sbjct: 256 R--PQLSIDEVATGEVWLGMAAVDKLLVDELKTSDEYLAERAKDADVFHLHYV-----QR 308

Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                 +   + +S  +       +   Q  W
Sbjct: 309 KSLQERMGMAAATSADQLATKWWGRLTQQRFW 340


>gi|326559247|gb|EGE09678.1| putative periplasmic protease [Moraxella catarrhalis 46P47B1]
 gi|326560765|gb|EGE11132.1| putative periplasmic protease [Moraxella catarrhalis 103P14B1]
 gi|326569629|gb|EGE19681.1| putative periplasmic protease [Moraxella catarrhalis BC1]
 gi|326570847|gb|EGE20871.1| putative periplasmic protease [Moraxella catarrhalis BC7]
 gi|326574397|gb|EGE24339.1| putative periplasmic protease [Moraxella catarrhalis 101P30B1]
 gi|326576422|gb|EGE26331.1| putative periplasmic protease [Moraxella catarrhalis O35E]
          Length = 325

 Score = 85.4 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 107/273 (39%), Gaps = 16/273 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81
           S+        +  +   G I+ S      +E+   I      +    +++ L S GG  +
Sbjct: 62  STDDHTQKAAIYVLDFDGDIKASAVAHLREEISAIISVA---NRGDEVVLRLESGGGQVH 118

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           A       + ++K     +   V ++AAS GY+++C ++ I+A++ +++GSIGV+ Q P 
Sbjct: 119 AYGLAAAQLVRIKEAGLKLTICVDKIAASGGYMMACTADKIIASDFAVIGSIGVVSQLPN 178

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
              FL K  V  +   +   K   + F E + +     Q  ++  +  F   + + R  P
Sbjct: 179 FHEFLKKHDVQFEQFTAGEYKRTVTIFGENDDEDRAKHQADIERIHELFKGFIHKYR--P 236

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G +W G +A ++GLID +G  +     L           +   + P     
Sbjct: 237 QLDLERVATGEVWFGEDALELGLIDEIGTSD---AYLLDQLKACEAYLLHSRSKP-TLAE 292

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
                  + S + D I        Q L     P
Sbjct: 293 KIGLAEQLGSSVTDVIGQTGNLLGQALAKFSRP 325


>gi|46578615|ref|YP_009423.1| minor capsid protein C, degenerate [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448026|gb|AAS94682.1| minor capsid protein C, degenerate [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 439

 Score = 85.4 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 18/221 (8%)

Query: 36  PHVARIAIRGQIED--------------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
             VA I + G +                  ++   I     D    A+++ ++SPGG+  
Sbjct: 70  DGVAVIPVMGMLTPRRSWSWGYGYTTGMLDQIRPAIAAALADRGVRAILLDVASPGGTVA 129

Query: 82  AGEAIFRAI--QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
             + +   I  ++ K  KP+    + + ASA Y+I  A+  ++A  T+ VGSIGV+  Y 
Sbjct: 130 GMKELADYIGAERAKGTKPMAAYANGLMASAAYMIGSATGRVLAPATATVGSIGVISVYE 189

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
               + +K G+S   + +   KA  +P + +       +Q+ + + Y  F   VS S  +
Sbjct: 190 DWSKWNEKAGLSYAYLTAGQWKAVGNPDTPLADNERAYLQERLTALYRHFTDGVSASMGL 249

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYA 239
                   +DG+++  +EA   GL+  +   +E    +L  
Sbjct: 250 DAANLTTWADGKVFVASEA-PQGLVTAIVADREAAIATLAK 289


>gi|326559886|gb|EGE10286.1| putative periplasmic protease [Moraxella catarrhalis 7169]
          Length = 325

 Score = 85.4 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 107/273 (39%), Gaps = 16/273 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81
           S+        +  +   G I+ S      +E+   I      +    +++ L S GG  +
Sbjct: 62  STDDHTQKAAIYVLDFDGDIKASAVAHLREEISAIISVA---NRGDEVVLRLESGGGQVH 118

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           A       + ++K     +   V ++AAS GY+++C ++ I+A++ +++GSIGV+ Q P 
Sbjct: 119 AYGLAAAQLVRIKEAGLKLTICVDKIAASGGYMMACTADKIIASDFAVIGSIGVVSQLPN 178

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
              FL K  V  +   +   K   + F E + +     Q  ++  +  F   + + R  P
Sbjct: 179 FHEFLKKHDVQFEQFTAGEYKRTVTIFGENDDEDRAKHQADIERIHELFKGFIHKYR--P 236

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G +W G +A ++GLID +G  +     L           +   + P     
Sbjct: 237 QLDLERVATGEVWFGEDALELGLIDEIGTSD---AYLLDQLKACEAYLLHSRSKP-TLAE 292

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
                  + S + D I        Q L     P
Sbjct: 293 KIGLAEQLGSSVTDVIGQTGNLLGQALAKFSRP 325


>gi|296113403|ref|YP_003627341.1| S49 family peptidase [Moraxella catarrhalis RH4]
 gi|295921097|gb|ADG61448.1| S49 family peptidase [Moraxella catarrhalis RH4]
 gi|326566604|gb|EGE16747.1| putative periplasmic protease [Moraxella catarrhalis 12P80B1]
 gi|326576010|gb|EGE25933.1| putative periplasmic protease [Moraxella catarrhalis CO72]
          Length = 325

 Score = 85.4 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 107/273 (39%), Gaps = 16/273 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81
           S+        +  +   G I+ S      +E+   I      +    +++ L S GG  +
Sbjct: 62  STDDHTQKAAIYVLDFDGDIKASAVAHLREEISAIISVA---NRGDEVVLRLESGGGQVH 118

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           A       + ++K     +   V ++AAS GY+++C ++ I+A++ +++GSIGV+ Q P 
Sbjct: 119 AYGLAAAQLVRIKEAGLKLTICVDKIAASGGYMMACTADKIIASDFAVIGSIGVVSQLPN 178

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
              FL K  V  +   +   K   + F E + +     Q  ++  +  F   + + R  P
Sbjct: 179 FHEFLKKHDVQFEQFTAGEYKRTVTIFGENDDEDRAKHQADIERIHELFKGFIHKYR--P 236

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G +W G +A ++GLID +G  +     L           +   + P     
Sbjct: 237 QLDLERVATGEVWFGEDALELGLIDEIGTSD---AYLLDQLKACEAYLLHSRSKP-TLAE 292

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
                  + S + D I        Q L     P
Sbjct: 293 KIGLAEQLGSSVTDVIGQTGNLLGQALAKFSRP 325


>gi|260773130|ref|ZP_05882046.1| SohB protein peptidase U7 family [Vibrio metschnikovii CIP 69.14]
 gi|260612269|gb|EEX37472.1| SohB protein peptidase U7 family [Vibrio metschnikovii CIP 69.14]
          Length = 331

 Score = 85.4 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 110/267 (41%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
                   PH+  +   G I        +E +  I  +++      ++V L + GG  + 
Sbjct: 75  GELDSKREPHLFVLDFHGSIDAKEVSSLREEVTAILAVAQ--PGDEVLVRLETGGGMVHG 132

Query: 83  GEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + ++K  + P+   V ++AAS GY+++C ++ IVAA  ++VGSIGV+ Q P  
Sbjct: 133 YGLASSQLDRLKAAQLPLTIAVDKVAASGGYMMACIADKIVAAPFAIVGSIGVIAQIPNF 192

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L +  +  + + +   K   + F E   KA +  +  ++ ++  F   + + R  P 
Sbjct: 193 HKLLKRNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHGLFKDFIRDHR--PA 250

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G++AK +GL+D +   +++  +          + +      +     
Sbjct: 251 LDLDKVATGEHWFGSQAKALGLVDEIATSDDLIVNACK------EKTVLAVRYVRKKKLA 304

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D    + S   +  +  +     + L 
Sbjct: 305 DKLAGTASQAADAVLLKLLSRGQRPLM 331


>gi|269966535|ref|ZP_06180618.1| sohB protein, peptidase U7 family [Vibrio alginolyticus 40B]
 gi|269828879|gb|EEZ83130.1| sohB protein, peptidase U7 family [Vibrio alginolyticus 40B]
          Length = 353

 Score = 85.4 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 109/263 (41%), Gaps = 17/263 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
            S      PH+  +   G I+        +E+   +      D    +++ L S GG  +
Sbjct: 97  GSLDSKREPHLFVLDFNGSIDAKEVASLREEITAILAVAREGDE---VLLRLESGGGMVH 153

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P 
Sbjct: 154 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPN 213

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E   KA    +  ++ ++  F   + E R  P
Sbjct: 214 FNKLLKKHDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHVLFKDFIRERR--P 271

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +AK++GL+D +   +++  +        S+  +      K    
Sbjct: 272 SLDLDKVATGEHWFGTQAKELGLVDDISTSDDIVVAACKDKTVLSVHYV-----QKKKLA 326

Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283
             L  ++        + L ++ +
Sbjct: 327 DKLAGVAGKVADSVILKLAERGQ 349


>gi|74318647|ref|YP_316387.1| putative periplasmic protease [Thiobacillus denitrificans ATCC
           25259]
 gi|74058142|gb|AAZ98582.1| serine protease SohB [Thiobacillus denitrificans ATCC 25259]
          Length = 333

 Score = 85.4 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 100/262 (38%), Gaps = 33/262 (12%)

Query: 39  ARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
             +  +G I  S      +E+   +E         A++V L S GG           + +
Sbjct: 93  YLLDFKGDIRASAVAALREEVSAVLEVA---QPGDAVLVRLESGGGLVNRYGLGAAQLLR 149

Query: 93  VKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           +++ +  +T + +  A++G  +  A  + IVA+  +LVGSIGV+ Q P    +L    + 
Sbjct: 150 IRDAQLPLTVMVDSVAASGGYLMAAVADTIVASPFALVGSIGVVAQTPNFHRWLRARDID 209

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
            +   +   K   + F E        +++ +D  +  F   V   R  P      ++ G 
Sbjct: 210 WEQFTAGQYKRTVTLFGENTETGRAKLREELDDIHALFRAFVQARR--PQLDVDKVATGE 267

Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
            W G+ A ++GL+D +   +E+ ++    G                       +    + 
Sbjct: 268 TWLGSRALELGLVDEIATSDELIRAACRRGKVLH------------------LSFQRKAR 309

Query: 272 LEDTIPLMKQTKVQGLWAVWNP 293
           L + +    QT   G   +W P
Sbjct: 310 LTERVGRAAQTMWDG---IWQP 328


>gi|153001229|ref|YP_001366910.1| putative periplasmic protease [Shewanella baltica OS185]
 gi|151365847|gb|ABS08847.1| Peptidase S49 domain protein [Shewanella baltica OS185]
          Length = 338

 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 109/252 (43%), Gaps = 12/252 (4%)

Query: 34  NSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEAIFRAI 90
           ++  V  I  +G I+ ++   L E I  I    +    ++V++ S GG  +        +
Sbjct: 90  STGKVFVIDFKGSIDAAEVASLREEISAILAIAEKGDEVVVNVESGGGMVHGYGLASSQL 149

Query: 91  QKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
            ++ +   P+   V ++AAS GY+++C +N I AA  ++VGSIGV+ Q P     L K  
Sbjct: 150 DRLRQADIPLTVCVDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQLPNFNRLLKKHE 209

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +  +   +   K   + F E + +  Q  Q+ ++ ++  F   V + R  P    + ++ 
Sbjct: 210 IDYEQHTAGNFKRTLTVFGENSDEGRQKFQEELEETHVLFKAFVGKYR--PELDLVKVAT 267

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           G  W G +A ++GL+D +   ++V  SL A       R +            D      S
Sbjct: 268 GEHWYGQQAIELGLVDAISTSDDVIMSLAA------ERTVYKMRYQVRKKLADKIAHGAS 321

Query: 270 SLLEDTIPLMKQ 281
             +      + +
Sbjct: 322 LSVNAIFNRLIE 333


>gi|10957305|ref|NP_058329.1| hypothetical protein R27_p116 [Salmonella typhi]
 gi|18466650|ref|NP_569458.1| putative peptidase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|7800358|gb|AAF69954.1|AF250878_115 orf; hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|16505966|emb|CAD09852.1| putative peptidase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|145849084|emb|CAM91648.1| putative transmembrane peptidase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|313651407|gb|EFS15803.1| peptidase family S49 family protein [Shigella flexneri 2a str.
           2457T]
          Length = 393

 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/367 (16%), Positives = 112/367 (30%), Gaps = 80/367 (21%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNS------PHVARIAIRGQIEDSQE----- 52
           + +   T  V++SL+ L     S  +  +          H+A + I G++    E     
Sbjct: 27  MFRIHTTSKVVISLLALAAAGVSAFNIYDKYQESEGRMDHIAVVRISGEMGTGSEVGDGS 86

Query: 53  -LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI----------- 100
            +   + +   +  A A+I+   S GG       I+R I  +++ +  I           
Sbjct: 87  VIATALAKAYNNPHAKAVIIEAESGGGGPSDAIIIYRQINALRSHQQKIERVSHAESTSK 146

Query: 101 --------------TEVHEMAASAGYLISCASNIIVAAET------------SLVGSIGV 134
                             E++      +  A +    ++              +  S   
Sbjct: 147 PRNTSDHSASRSQADSNAELSKRNTLDVLSAGSGHFISDMENSYKPIIVSVKGICASACY 206

Query: 135 LFQYPYVKPFLD----------------------KLGVSIKSVKSSPMKAEPSPFSEVNP 172
               P    + D                       +GV  + + +   K    P+  ++ 
Sbjct: 207 YAVSPADAIYADSSALTGSIGVRMDHWNLSRVMDTVGVKNEPLTAGEFKDALDPYHPLSD 266

Query: 173 KAVQMMQDVV-DSSYHWFVRLVSESRNIPY-----DKTLVLSDGRIWTGAEAKKVGLIDV 226
                MQ  + D+ +  F+  V + R            + L  GR+WT  +A + GLID 
Sbjct: 267 ATRDFMQKQILDAMHEQFIADVEQGRGKKLLSRPEADAVALYSGRVWTTQQAIRYGLIDG 326

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
                EV   L  +    S    K +N P+      L  L   S   +T+       +  
Sbjct: 327 DLTPVEVRSRLSQM---YSTTIFKTYNEPQRSLRSALGMLMSLSTNVETLAGTTSRILDS 383

Query: 287 LWAVWNP 293
           + A   P
Sbjct: 384 VQATSYP 390


>gi|229515443|ref|ZP_04404902.1| SohB protein peptidase U7 family [Vibrio cholerae TMA 21]
 gi|229347212|gb|EEO12172.1| SohB protein peptidase U7 family [Vibrio cholerae TMA 21]
          Length = 356

 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 105/267 (39%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
                   PH+  +   G I        +E +  I  +++      +++ L + GG  + 
Sbjct: 100 GELESKRDPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 157

Query: 83  GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P  
Sbjct: 158 YGLASSQLDRLKAAGLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 217

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  +  + + +   K   + F E   KA    +  ++ ++  F   + + R  P 
Sbjct: 218 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKARDKFKLELEETHQLFKDFIRDHR--PA 275

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +AK +GL+D +   +++               +  +   K     
Sbjct: 276 LDLDKVATGEHWFGTQAKALGLVDEIQTSDDLIVEACK----NKTVLLLRYTQKKK--LA 329

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D          ++ +  +     + L 
Sbjct: 330 DKLAGVAGDAADNVLMKLISRGQRPLV 356


>gi|300723345|ref|YP_003712648.1| putative peptidase [Xenorhabdus nematophila ATCC 19061]
 gi|297629865|emb|CBJ90483.1| putative peptidase [Xenorhabdus nematophila ATCC 19061]
          Length = 348

 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 103/247 (41%), Gaps = 12/247 (4%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIE--DSQELIERIER--ISRDDSATALIVSLSSPGGS 79
             + +       P++  +  +G ++  +   L E I       D     +++ L SPGG 
Sbjct: 88  AAAKTGQKGLQKPNLYVLDFKGSMDAHEVDSLREEISAILAVADKK-DEVLLRLESPGGM 146

Query: 80  AYAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +        + +++ +       V ++AAS GY+++C ++ I+AA  +++GSIGV+ Q 
Sbjct: 147 VHGYGLAASQLTRLRQKGIRLTVVVDKVAASGGYMMACVADRIIAAPFAIIGSIGVVAQL 206

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P +   L K  + ++   +   K   + F E   +  +  Q+ ++ ++  F   + + R 
Sbjct: 207 PNIHRLLKKNDIDVELHTAGEYKRTLTMFGENTEQGRKKFQEDLNETHKLFKSFIYQHR- 265

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P      ++ G  W G +AK+ GLID VG  ++                   ++  K  
Sbjct: 266 -PSLDVESVATGEYWYGTQAKEHGLIDEVGVSDDFLIEQIDHCEVIG----VSYSRRKRV 320

Query: 259 WFCDLKN 265
               +  
Sbjct: 321 VERVMGG 327


>gi|262393791|ref|YP_003285645.1| SohB protein peptidase U7 family [Vibrio sp. Ex25]
 gi|262337385|gb|ACY51180.1| SohB protein peptidase U7 family [Vibrio sp. Ex25]
          Length = 353

 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 109/263 (41%), Gaps = 17/263 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
            S      PH+  +   G I+        +E+   +      D    +++ L S GG  +
Sbjct: 97  GSLDSKREPHLFVLDFNGSIDAKEVASLREEITAILAVAREGDE---VLLRLESGGGMVH 153

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P 
Sbjct: 154 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPN 213

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E   KA    +  ++ ++  F   + E R  P
Sbjct: 214 FNKLLKKHDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHVLFKDFIRERR--P 271

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +AK++GL+D +   +++  +        S+  +      K    
Sbjct: 272 SLDLDKVATGEHWFGTQAKELGLVDDISTSDDIVVAACKDKTVLSVHYV-----QKKKLA 326

Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283
             L  ++        + L ++ +
Sbjct: 327 DKLAGVAGKIADSVILKLAERGQ 349


>gi|160875901|ref|YP_001555217.1| putative periplasmic protease [Shewanella baltica OS195]
 gi|160861423|gb|ABX49957.1| Peptidase S49 domain protein [Shewanella baltica OS195]
 gi|315268092|gb|ADT94945.1| Peptidase S49 domain protein [Shewanella baltica OS678]
          Length = 338

 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 109/252 (43%), Gaps = 12/252 (4%)

Query: 34  NSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEAIFRAI 90
           ++  V  I  +G I+ ++   L E I  I    +    ++V++ S GG  +        +
Sbjct: 90  STGKVFVIDFKGSIDAAEVASLREEISAILAIAEKGDEVVVNVESGGGMVHGYGLASSQL 149

Query: 91  QKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
            ++ +   P+   V ++AAS GY+++C +N I AA  ++VGSIGV+ Q P     L K  
Sbjct: 150 DRLRQADIPLTVCVDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQLPNFNRLLKKHE 209

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +  +   +   K   + F E + +  Q  Q+ ++ ++  F   V + R  P    + ++ 
Sbjct: 210 IDYEQHTAGNFKRTLTVFGENSDEGRQKFQEELEETHVLFKAFVGKYR--PELDLVKVAT 267

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           G  W G +A ++GL+D +   ++V  SL A       R +            D      S
Sbjct: 268 GEHWYGQQAIELGLVDAISTSDDVIMSLAA------ERTVYKMRYQVRKKLADKIAHGAS 321

Query: 270 SLLEDTIPLMKQ 281
             +      + +
Sbjct: 322 LSVNAIFNRLIE 333


>gi|68250286|ref|YP_249398.1| putative periplasmic protease [Haemophilus influenzae 86-028NP]
 gi|148825774|ref|YP_001290527.1| putative periplasmic protease [Haemophilus influenzae PittEE]
 gi|229845217|ref|ZP_04465350.1| putative periplasmic protease [Haemophilus influenzae 6P18H1]
 gi|68058485|gb|AAX88738.1| possible protease SohB [Haemophilus influenzae 86-028NP]
 gi|148715934|gb|ABQ98144.1| predicted inner membrane peptidase [Haemophilus influenzae PittEE]
 gi|229811812|gb|EEP47508.1| putative periplasmic protease [Haemophilus influenzae 6P18H1]
 gi|309972922|gb|ADO96123.1| Probable protease SohB [Haemophilus influenzae R2846]
          Length = 353

 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 103/226 (45%), Gaps = 11/226 (4%)

Query: 38  VARIAIRGQIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
           V  +   G I  S+       I  I  +++ +    +++ L SPGG  +        + +
Sbjct: 106 VYVLDFCGDISASETTALREEISAILNVAKPED--EVLLRLESPGGIVHNYGFAASQLSR 163

Query: 93  VKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           +K +   +T  V ++AAS GY+++C ++ IV+A  +++GSIGV+ Q P V   L K  V 
Sbjct: 164 LKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDVD 223

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
           +  + +   K   +   E   K  Q  Q  ++ ++  F + VS++R         ++ G 
Sbjct: 224 VDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATGE 281

Query: 212 IWTGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256
            W G +A  + L+D +   +++  + +    V     ++K     K
Sbjct: 282 HWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKK 327


>gi|171913527|ref|ZP_02928997.1| peptidase S49 [Verrucomicrobium spinosum DSM 4136]
          Length = 306

 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 85/217 (39%), Gaps = 20/217 (9%)

Query: 38  VARIAIRGQIEDSQELIE--------------RIERISRDDSATALIVSLSSPGGSAYAG 83
           VA + I G +  +   +E               I++  +      +++ ++SPGG     
Sbjct: 93  VAVVPIYGILAKNAGFMEEACQGLSDINGAMTAIQQAMKAKEIKTIVLDVASPGGQVTGI 152

Query: 84  EAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
             I  A+++      K V T   E  ASA Y I   ++ I    +S VGSIG    +   
Sbjct: 153 REIAAAVREATQVRGKTVYTFSDERIASAAYWIGSQADEIYVTPSSTVGSIGTYLAWLDP 212

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              +   G+ ++   +   K    P   +     +++Q  V+    WF   VS +R    
Sbjct: 213 SMKMAMEGLRLEYFGAGTHKGMGLPGKPLTEADRKLLQGKVEEINGWFKDGVSAAR---P 269

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSL 237
                   G+ ++G EA K+ L D + G  EE  + L
Sbjct: 270 KVADSTMQGQTFSGEEAVKLKLADGLVGSWEEFIELL 306


>gi|254369756|ref|ZP_04985766.1| hypothetical protein FTAG_01090 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122715|gb|EDO66844.1| hypothetical protein FTAG_01090 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 338

 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 101/249 (40%), Gaps = 8/249 (3%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAGEA 85
              +     +  I  +G I+ S  + L   +  I    +    +IV + S GG       
Sbjct: 86  DKQDKPKQKIFVINFKGDIDASQVENLRNEVSAILAVANIEDEIIVRIDSLGGVVNGYGF 145

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYVKPF 144
               +++++     +T   +  A++G  +  A  + I+AA  ++VGSIGV+   P ++  
Sbjct: 146 AAAQLERIRQAGINLTVCIDKVAASGGYMMSAVAHKIIAAPFAIVGSIGVVGTIPNIREL 205

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L+K G++++   S   K   +       +     +  ++S +  F + +   R  P    
Sbjct: 206 LEKNGINVEMHTSGEYKRTLTTVGVNTEEGRNKFKQDLESIHQLFKKHILVYR--PSLDI 263

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             ++ G  W G +A ++GL+D +   ++    L  L    ++ ++      +  +     
Sbjct: 264 DKVATGEYWFGKDALELGLVDKIQTYDDYLIDL--LKKQHNVYEVSYVIKKEKGFLRSKF 321

Query: 265 NLSISSLLE 273
           ++   ++  
Sbjct: 322 SMLKRAITN 330


>gi|269138901|ref|YP_003295602.1| predicted inner membrane peptidase [Edwardsiella tarda EIB202]
 gi|267984562|gb|ACY84391.1| predicted inner membrane peptidase [Edwardsiella tarda EIB202]
 gi|304558887|gb|ADM41551.1| Putative protease SohB [Edwardsiella tarda FL6-60]
          Length = 348

 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 109/260 (41%), Gaps = 12/260 (4%)

Query: 32  EDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGEAIFR 88
               P V  +   G ++  +   L E I   ++      ++++ L SPGG  +       
Sbjct: 96  AAEKPCVYVLDFTGSMDAHEVGSLREEISAVLAVAGPQDSVLLRLESPGGVVHGYGLAAS 155

Query: 89  AIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            +++++     +T  V ++AAS GY+++C ++ IVAA  +++GSIGV+ Q P    +L K
Sbjct: 156 QLKRLRQAGVRLTVAVDKVAASGGYMMACVADRIVAAPFAIIGSIGVVAQIPNFNRWLKK 215

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
             V ++   +   K   + F E      +     +D ++  F + V   R  P      +
Sbjct: 216 NDVDVELHTAGEFKRTLTLFGENTDAGREKFCQELDETHLLFKQFVQ--RQRPSLDVDSV 273

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G  W G +A + GL+D +   +++  +         +R +      +   F     ++
Sbjct: 274 ATGEHWYGEQALEKGLVDALSTSDDLLIAEMEQADVIGVRYV------RRKGFMARMGMA 327

Query: 268 ISSLLEDTIPLMKQTKVQGL 287
            +   +  +    Q   + L
Sbjct: 328 AAQGADTLLLRWWQRSQRPL 347


>gi|212213146|ref|YP_002304082.1| putative periplasmic protease [Coxiella burnetii CbuG_Q212]
 gi|212011556|gb|ACJ18937.1| non-proteolytic protein, peptidase family S49 [Coxiella burnetii
           CbuG_Q212]
          Length = 338

 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 111/280 (39%), Gaps = 18/280 (6%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS------QELIERIERIS 61
           IK +Y +   +           +  +    +  +  +G I  S      +E+   +   +
Sbjct: 69  IKDKYELKRFLKSQKKEKKKKPNTTEAKKRIFVLNFQGDIRASAVCALREEITAVLTTAT 128

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNI 120
           RDD    +++ L S GG  +        +Q++      ++  + ++A S GYL++C ++ 
Sbjct: 129 RDDE---VLLRLESGGGVVHGYGLAASQLQRIKDAHIKLVIAIDKVAVSGGYLMACVADR 185

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           I+AA  ++VGSIGVL Q P    +L K  +  + V +   K   + F E   K    M++
Sbjct: 186 IIAAPFAIVGSIGVLAQLPNFHRYLRKKYIDFEQVMAGDYKRTLTLFGENTEKGRAKMKE 245

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
            V+ ++  F   + E R         ++ G  W  ++A  + L+D +   ++   +    
Sbjct: 246 EVEETHTLFKSFIKEHRQ--EVDVEQIATGEHWYASKALDLRLVDELKTSDDYLLAASQ- 302

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
                   + +    +     +  + + S      +  + 
Sbjct: 303 -----NYDLFEVQYKRKPPLAERVSHNASRAYHQLLSGLM 337


>gi|46581275|ref|YP_012083.1| minor capsid protein C [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450696|gb|AAS97343.1| minor capsid protein C [Desulfovibrio vulgaris str. Hildenborough]
 gi|311234940|gb|ADP87794.1| peptidase S49 [Desulfovibrio vulgaris RCH1]
          Length = 439

 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 18/221 (8%)

Query: 36  PHVARIAIRGQIED--------------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
             VA I + G +                  ++   I     D    A+++ ++SPGG+  
Sbjct: 70  DGVAVIPVMGMLTPRRSWSWGYGYTTGMLDQIRPAIASALADRGVRAILLDVASPGGTVA 129

Query: 82  AGEAIFRAI--QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
             + +   I  ++ K  KP+    + + ASA Y+I  A+  ++A  T+ VGSIGV+  Y 
Sbjct: 130 GMKELADYIGAERAKGTKPMAAYANGLMASAAYMIGSATGRVLAPATATVGSIGVISVYE 189

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
               + +K G+S   + +   KA  +P + +       +Q+ + + Y  F   VS S  +
Sbjct: 190 NWSKWNEKAGLSYAYLTAGQWKAVGNPDTPLADNERAYLQERLTALYRHFTDGVSASMGL 249

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYA 239
                   +DG+++  +EA   GL+  +   +E    +L  
Sbjct: 250 DAANLTTWADGKVFVASEA-PQGLVTAIVADREAAIATLAK 289


>gi|238785978|ref|ZP_04629941.1| Protein C serine peptidase MEROPS family S49 [Yersinia bercovieri
           ATCC 43970]
 gi|238713126|gb|EEQ05175.1| Protein C serine peptidase MEROPS family S49 [Yersinia bercovieri
           ATCC 43970]
          Length = 260

 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 14/220 (6%)

Query: 38  VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           VA I I+G              +     +         DD+   +   + SPGG      
Sbjct: 42  VAVIPIQGTLVQKLGTLRPYSGMTGYDGIRASFLTAMNDDAVKGICFDIDSPGGEVAGCF 101

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +   I   +  KP+ + + E A SA Y ++ A++ I+   T  VGSIGV+  +      
Sbjct: 102 DLVDEIYAARGAKPIWSILSENAYSAAYALASAADRIIVPRTGGVGSIGVIVMHVDWSQR 161

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           +   GV +  +     KAE +P+  ++ +A + +Q  VD     FV  VS +R I     
Sbjct: 162 IKSDGVQVTIITFGSRKAESNPYEALSEEAKKAIQSDVDEMGRLFVSTVSRNRGIAERTI 221

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
              ++   +  A+  ++GL D V   +  ++ L  L  ++
Sbjct: 222 RD-TEAACFLAADGVQLGLADQVAPPDVAFRDLLTLVGEK 260


>gi|320108129|ref|YP_004183719.1| peptidase S49 [Terriglobus saanensis SP1PR4]
 gi|319926650|gb|ADV83725.1| peptidase S49 [Terriglobus saanensis SP1PR4]
          Length = 248

 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 93/213 (43%), Gaps = 11/213 (5%)

Query: 2   EFVLKKIKTRYVMLSLVTLTVVYF---------SWSSHVEDNSPHVARIAIRGQIEDSQE 52
            F L  I    +ML+L+    V+          S  + +  +S  +  I + G I  +  
Sbjct: 31  GFWLLIIGGSLLMLALLIAGTVWSTMQSLKADDSEENGIATSSKKIGVIEVTGVILTADT 90

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASA 110
           L +++ +++ D    A+I+ ++SPGG A A + +F  + +++    K +I  +  + AS 
Sbjct: 91  LSQQMRKMAADSDVKAIILHINSPGGGAAASQELFNEVVRIRKESHKKIIASIESVGASG 150

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
            Y I+   + I A + S+VGSIGV+ ++      L    +   ++K+  +K    P  ++
Sbjct: 151 AYYIASGCDRIYANDASVVGSIGVIMEWTNYGELLRWAKLKNVTLKAGELKDAGDPTRDL 210

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            PK   +  D    +          +R+     
Sbjct: 211 TPKEQSVWSDRRRCADRGLSCERRRARSSEPQA 243


>gi|49475134|ref|YP_033175.1| Phage protein gp18 [Bartonella henselae str. Houston-1]
 gi|49237939|emb|CAF27143.1| Phage protein gp18 [Bartonella henselae str. Houston-1]
          Length = 369

 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 85/220 (38%), Gaps = 16/220 (7%)

Query: 35  SPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
             ++A I + G +                + L              A+++ + S GG A 
Sbjct: 87  QNNIAIIPVHGTLVRRSAWLGALSGLTSYEGLRASFREAIAQPDVNAVLLDIDSGGGEAG 146

Query: 82  AGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
               +    Q +  +  KP+    +E A SA Y I+CA++ I  A T +VGSIGV+  + 
Sbjct: 147 GIFDLVEEFQTLSKQYAKPIWAHANEFACSAAYAIACAASQIWIARTGVVGSIGVVCAHL 206

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                 +K G+    V     K   +    ++  A   MQ      Y  FV  V+++R +
Sbjct: 207 DQSLADEKQGLKWTFVFEGDHKTHGNSHEPLSDTAQIKMQADCALLYEMFVDWVAKNRPL 266

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             D          + G +A ++GL D  G   +  ++L  
Sbjct: 267 SADAIRDTK-AETFIGIQALELGLADAQGTLAQALEALTD 305


>gi|326794648|ref|YP_004312468.1| peptidase S49 domain protein [Marinomonas mediterranea MMB-1]
 gi|326545412|gb|ADZ90632.1| Peptidase S49 domain protein [Marinomonas mediterranea MMB-1]
          Length = 337

 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 109/255 (42%), Gaps = 16/255 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81
                 +   V  +   G I+ S      +E+   +   ++DD    ++V L S GG  +
Sbjct: 80  KKSPATDKKKVFVLDFDGDIKASAVESMRREITAILAVATKDDE---VVVRLESGGGMVH 136

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           +       +Q++K+    +T    ++AAS GY+++C ++ I+AA  +++GSIGV+ Q P 
Sbjct: 137 SYGLAASQLQRIKDAGVSLTICVDKVAASGGYMMACVADKIIAAPFAILGSIGVVAQIPN 196

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           +   LDK  + ++   +   K   +   E   +  +  +  ++ ++  F   V+  R   
Sbjct: 197 IHRLLDKNNIDVELHTAGKFKRTLTVIGENTDEGREKFKQDLEDTHVLFKDFVASQR--A 254

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G++A +  LID V   +      Y            +++ PK+   
Sbjct: 255 VLDIESVATGETWYGSQAVENKLIDEVKTSDTYIVDQYDNANVFK----VEYSEPKSVAE 310

Query: 261 CDLKNLSISSLLEDT 275
               ++  +  ++ T
Sbjct: 311 RLGLSVLSAVEVKAT 325


>gi|270262110|ref|ZP_06190382.1| hypothetical protein SOD_b03170 [Serratia odorifera 4Rx13]
 gi|270043986|gb|EFA17078.1| hypothetical protein SOD_b03170 [Serratia odorifera 4Rx13]
          Length = 348

 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 115/268 (42%), Gaps = 14/268 (5%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER--ISRDDSATALIVSLSSPGGSAY 81
           + +  VE   P +  +  +G ++  +   L E I             +++ L SPGG  +
Sbjct: 90  AKAGAVEATKPCLYVLDFKGSMDAHEVTSLREEISAVLAVATPQ-DEVLLRLESPGGVVH 148

Query: 82  AGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + +++     +T  V ++AAS GY+++C ++ IVAA  +++GSIGV+ Q P 
Sbjct: 149 GYGLASSQLARLRTGGIRLTVAVDKVAASGGYMMACVADRIVAAPFAIIGSIGVVAQIPN 208

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  + ++   +   K   + F E   +  +  ++ ++ ++  F   V + R  P
Sbjct: 209 FHRLLKKNDIDVELHTAGQFKRTLTLFGENTEQGREKFREDLNETHELFKEFVHQQR--P 266

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G++AK+ GLID +G  +++   +  +       ++      +    
Sbjct: 267 SLDIDSVATGEHWFGSQAKEKGLIDAIGTSDDLL--IAEM----ENHEVVGVRYTRRKRL 320

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288
            D    S +  ++  +    Q   + L 
Sbjct: 321 MDRFTGSAAESVDRLLLRWWQRGEKPLL 348


>gi|15602450|ref|NP_245522.1| putative periplasmic protease [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12720854|gb|AAK02669.1| SohB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 353

 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 109/269 (40%), Gaps = 17/269 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSA 80
                +++ P +  +  +G I  S      +E+   I     +D    ++V L SPGG  
Sbjct: 95  GEDIADEHKPRLYVLQFKGDIAASATSALREEVSTIIGVAKPEDE---VLVRLESPGGMV 151

Query: 81  YAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +        + ++K     +T  V ++AAS GY+++C ++ IVAA  +++GS+GV+ Q P
Sbjct: 152 HGYGLAASQLLRLKQHGIKLTVAVDKVAASGGYMMACVADTIVAAPFAILGSVGVVAQIP 211

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            +   L K  V +  + +   K   +   E   K  Q  Q  ++ ++  F + V+++R  
Sbjct: 212 NIHRLLKKHDVDVDVMTAGEYKRTMTVLGENTEKGKQKFQQELEETHQLFKQFVTQNR-- 269

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           P      ++ G  W G +A  + L+D +   +++      L   +  + +          
Sbjct: 270 PQVNIEEIATGEHWFGQQALGLHLVDAISTSDDLI-----LNAIKENKTVLSVKYHVKQS 324

Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
           F            +  +    +     L 
Sbjct: 325 FLQKVGKQAEESTDAFLLRWLRRNNSTLL 353


>gi|285017031|ref|YP_003374742.1| hypothetical protein XALc_0210 [Xanthomonas albilineans GPE PC73]
 gi|283472249|emb|CBA14755.1| hypothetical phage-related protein [Xanthomonas albilineans]
          Length = 433

 Score = 85.0 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 85/220 (38%), Gaps = 16/220 (7%)

Query: 36  PHVARIAIRGQ----------IEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYA 82
             VA + I G           I  +     L   I+    +    A+++ ++SPGG A  
Sbjct: 54  DGVAVVPITGPVFRYANLFTEISGATSTQVLATDIQSALDNPYVRAIVLDINSPGGEATG 113

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
              + + I      KP+        ASA Y +  A++ IV  +T+++GSIGV+  Y    
Sbjct: 114 INELAKLIHAGSACKPIKAYAGGTMASAAYWLGAAADEIVIDDTAVLGSIGVVMSYLDTS 173

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                    ++ V+    ++          +    +Q  VD+    FV  V+  RN   D
Sbjct: 174 AR--DAKSDVRRVEIVSSQSPDKRVDPSTDEGRAKVQAQVDALADVFVAAVARYRNTSTD 231

Query: 203 KTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
             L     G +  GA+A K G+ D +G  E V   L    
Sbjct: 232 TVLSDFGRGGVRVGADAVKAGMADRIGSLESVIAELAGSA 271


>gi|145631466|ref|ZP_01787235.1| predicted inner membrane peptidase [Haemophilus influenzae R3021]
 gi|144982896|gb|EDJ90409.1| predicted inner membrane peptidase [Haemophilus influenzae R3021]
          Length = 353

 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 103/226 (45%), Gaps = 11/226 (4%)

Query: 38  VARIAIRGQIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
           V  +   G I  S+       I  I  +++ +    +++ L SPGG  +        + +
Sbjct: 106 VYVLDFCGDISASETTALREEISAILNVAKPED--EVLLRLESPGGIVHNYGFAASQLSR 163

Query: 93  VKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           +K +   +T  V ++AAS GY+++C ++ IV+A  +++GSIGV+ Q P V   L K  V 
Sbjct: 164 LKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDVD 223

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
           +  + +   K   +   E   K  Q  Q  ++ ++  F + VS++R         ++ G 
Sbjct: 224 VDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATGE 281

Query: 212 IWTGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256
            W G +A  + L+D +   +++  + +    V     ++K     K
Sbjct: 282 HWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKK 327


>gi|262165297|ref|ZP_06033034.1| SohB protein peptidase U7 family [Vibrio mimicus VM223]
 gi|262025013|gb|EEY43681.1| SohB protein peptidase U7 family [Vibrio mimicus VM223]
          Length = 353

 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 106/267 (39%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
                   PH+  +   G I        +E +  I  +++      +++ L + GG  + 
Sbjct: 97  GELESKREPHLFVLDFHGSIDAKEVASLREEVSAILAVAKAGD--EVLLRLETGGGMVHG 154

Query: 83  GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P  
Sbjct: 155 YGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 214

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  +  + + +   K   + F E   KA +  +  ++ ++  F   + + R  P 
Sbjct: 215 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKLELEETHQLFKDFIRDHR--PA 272

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +AK +GL+D +   +++             + +      +     
Sbjct: 273 LDLDKVATGEHWFGTQAKTLGLVDEIQTSDDLIVEACK------NKTVLLLRYVQKKKLA 326

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D          ++ +  +     + L 
Sbjct: 327 DKLAGVAGDAADNVLMKLISRGQRPLV 353


>gi|271500646|ref|YP_003333671.1| Peptidase S49 domain-containing protein [Dickeya dadantii Ech586]
 gi|270344201|gb|ACZ76966.1| Peptidase S49 domain protein [Dickeya dadantii Ech586]
          Length = 348

 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 112/258 (43%), Gaps = 18/258 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGS 79
           +     +   P +  +   G ++  +      E+   +     +D    +++ L SPGG 
Sbjct: 90  AKRGEEKSARPCLYVLDFNGSMDAGEVSSLREEVSAVLAVARPEDE---VLLRLESPGGV 146

Query: 80  AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +        +Q+++ R   +T  V ++AAS GY+++C ++ IVAA  ++VGSIGV+ Q 
Sbjct: 147 VHGYGLAASQLQRIRQRGIRLTVAVDKVAASGGYMMACVADRIVAAPFAIVGSIGVVAQI 206

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P     L    + ++   +   K   + F E   +  +  +  ++ ++  F + VSE R 
Sbjct: 207 PNFNRLLKNKDIDVELHTAGQYKRTLTLFGENTDEGREKFRQELNETHLLFKQFVSEMR- 265

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P      ++ G  W G +AK +GL+D +G  +++   +  +       ++      +  
Sbjct: 266 -PSLDIESVATGEHWFGTQAKDMGLVDAIGTSDDLL--IAEM----ENHEVLAVRYTRRK 318

Query: 259 WFCDLKNLSISSLLEDTI 276
              D    S S  LE  +
Sbjct: 319 RLLDRLTGSTSDALERLM 336


>gi|157370899|ref|YP_001478888.1| putative periplasmic protease [Serratia proteamaculans 568]
 gi|157322663|gb|ABV41760.1| Peptidase S49 domain protein [Serratia proteamaculans 568]
          Length = 348

 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 115/268 (42%), Gaps = 14/268 (5%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER--ISRDDSATALIVSLSSPGGSAY 81
           + +  VE   P +  +  +G ++  +   L E I             +++ L SPGG  +
Sbjct: 90  AKAGAVEATKPCLYVLDFKGSMDAHEVTSLREEISAVLAVATPQ-DEVLLRLESPGGVVH 148

Query: 82  AGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + +++     +T  V ++AAS GY+++C ++ IVAA  +++GSIGV+ Q P 
Sbjct: 149 GYGLASSQLARLRTGGIRLTVAVDKVAASGGYMMACVADRIVAAPFAIIGSIGVVAQIPN 208

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  + ++   +   K   + F E   +  +  ++ ++ ++  F + V + R  P
Sbjct: 209 FHRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNDTHELFKQFVHQQR--P 266

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +AK+ GLID +G  +++   +  +       ++      +    
Sbjct: 267 SLDIDSVATGEHWFGTQAKEKGLIDAIGTSDDLL--IAEM----ENHEVVGVRYARRKRM 320

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288
            D    S +  ++  +    Q   + L 
Sbjct: 321 MDRFTGSAAESVDRLLLRWWQRGEKPLL 348


>gi|260576715|ref|ZP_05844701.1| peptidase S49 [Rhodobacter sp. SW2]
 gi|259021082|gb|EEW24392.1| peptidase S49 [Rhodobacter sp. SW2]
          Length = 458

 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 83/208 (39%), Gaps = 14/208 (6%)

Query: 36  PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A I + G +                + +  ++     D +   + + + S GG    
Sbjct: 83  DGIAVIEVSGVLVHRGAWIGQSSGQTSYEGIAAQLAAAVTDPAVRGIALEIDSFGGEVAG 142

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
              +  AI+  +  KPV   V E A SAGY ++  +  I+   T  VGSIGV+  +  + 
Sbjct: 143 VFDLADAIRAARTAKPVQAFVAEHAFSAGYALASQATSIILPRTGAVGSIGVVVMHADLS 202

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L   GV++  + S   K + +P++ +       +Q  +DS    F + VS  R     
Sbjct: 203 GQLADDGVTVTLIHSGAHKVDGNPYAPLPDPVRARIQGEIDSLRTLFAQTVSAGRGRRLT 262

Query: 203 KTLVLSDGRI-WTGAEAKKVGLIDVVGG 229
               L+     + GAEA   GL D V  
Sbjct: 263 AEAALATEAECYRGAEAVAAGLADEVSD 290


>gi|332978457|gb|EGK15170.1| protease SohB [Psychrobacter sp. 1501(2011)]
          Length = 332

 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 106/267 (39%), Gaps = 12/267 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81
               +     V  +   G I+ S      +E+   I   ++ D    +++ L S GG  +
Sbjct: 56  KGKSKQKEKRVFVLDFDGDIKASAVKYLREEISAIISTANKGDE---VVLRLESGGGMVH 112

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + ++K     +T    ++AAS GY+++C ++ I+AA  ++VGSIGV+ Q P 
Sbjct: 113 GYGLAAAQLVRLKEAGLTLTVCVDKIAASGGYMMACVADKILAAPFAVVGSIGVVSQMPN 172

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
              +L K  +  +   +   K   + F E + +     ++ ++ ++  F   V+  R  P
Sbjct: 173 FNKWLKKHDIDYEMFTAGEYKRTVTMFGENDEEDRAKYKEELEQTHELFKHFVTTYR--P 230

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 +++G  W G +A K+ L+D +   +             ++   +     +    
Sbjct: 231 QLDLSKVANGDHWYGEDALKLNLVDELSTSDAYLLKQMEDYQAYALMSRQKPTFAEKLGL 290

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGL 287
            +  + ++S ++              L
Sbjct: 291 ANAAHSAVSGMVNTATKSALTALSDKL 317


>gi|261492956|ref|ZP_05989500.1| putative inner membrane peptidase [Mannheimia haemolytica serotype
           A2 str. BOVINE]
 gi|261495996|ref|ZP_05992408.1| putative inner membrane peptidase [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|261308346|gb|EEY09637.1| putative inner membrane peptidase [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|261311381|gb|EEY12540.1| putative inner membrane peptidase [Mannheimia haemolytica serotype
           A2 str. BOVINE]
          Length = 350

 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 105/254 (41%), Gaps = 13/254 (5%)

Query: 40  RIAIRGQIEDSQ--ELIERIERISR--DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95
            +   G +   +   L   I+ +    +     +++ L SPGG  +        +Q++++
Sbjct: 105 VLNFNGDMMAHEVNSLRREIDAVISLANPEKDEVLLKLESPGGVVHGYGLAASQLQRLRD 164

Query: 96  RK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
           R   +   V ++AAS GY+++C +N IV+A  +++GS+GV+ Q P +   L K  + +  
Sbjct: 165 RNIYLTAAVDKVAASGGYMMACVANKIVSAPFAVIGSVGVVAQVPNIHRLLKKHDIDVDV 224

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
           + +   K   +   E   K  Q  Q  ++ ++  F + V+  R  P      ++ G  W 
Sbjct: 225 MTAGEYKRTVTLVGENTEKGKQKFQQELEETHSLFKQFVARRR--PQLDIEQVATGEHWF 282

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLED 274
           G +A ++ L+D +   +++  +          +++ +    +                E+
Sbjct: 283 GQQAIELNLVDEIATSDDLLLNAIK------EKEVIELKYKEKKKLAQKLGSQFEQSAEN 336

Query: 275 TIPLMKQTKVQGLW 288
            +  +       L 
Sbjct: 337 LLAKILHKSRSTLM 350


>gi|198283216|ref|YP_002219537.1| putative periplasmic protease [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666621|ref|YP_002425447.1| type IV pilin biogenesis peptidase, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247737|gb|ACH83330.1| Peptidase S49 domain protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518834|gb|ACK79420.1| type IV pilin biogenesis peptidase, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 334

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 95/231 (41%), Gaps = 12/231 (5%)

Query: 38  VARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
              +  +G I  S      +E+   I+          +++ L S GG           + 
Sbjct: 95  TYLLDFKGDIRASAVSALREEISAIIQAA---KPGDTVLLRLESGGGMVNTYGLASAQLL 151

Query: 92  KVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           +++  K  +   V  +AAS GY+++  ++ IVA+  +L+GSIGV+ Q P    +L    +
Sbjct: 152 RLRAAKIHLTVLVDAVAASGGYMMAVTADRIVASPFALIGSIGVVAQIPNFHRWLQDRNI 211

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
             +   +   K   + F E        +++ ++ ++  F   V + R  P      ++ G
Sbjct: 212 DWEQFTAGKFKRTVTLFGENTETGRAKLREELEETHAQFRDFVQQYR--PQLDLEQVATG 269

Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
             W G +A+++GL+D +   +E+       G   ++   +    P+     
Sbjct: 270 EAWLGNKARQLGLVDDLATSDEIILEAVRQGKVLALHYQRQKTLPQRLGLA 320


>gi|253989551|ref|YP_003040907.1| periplasmic protease [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253781001|emb|CAQ84163.1| putative Peptidase S49 [Photorhabdus asymbiotica]
          Length = 348

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 100/213 (46%), Gaps = 6/213 (2%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIE--DSQELIERIERISRDDSATA-LIVSLSSPGGSAYA 82
           + +       P +  +  +G I+  +   L E I  I     A   +++ L SPGG  + 
Sbjct: 90  AKAGQKGLQKPCLYVLDFKGSIDAHEVDSLREEISAILAVADAKDEVLLRLESPGGMVHG 149

Query: 83  GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + +++ +   +T  V ++AAS GY+++C ++ I+AA  +++GSIGV+ Q P +
Sbjct: 150 YGLAASQLARLRQKGIRLTVAVDKVAASGGYMMACVADRIIAAPFAIIGSIGVVAQIPNI 209

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  + ++   +   K   +   E   +  +  Q+ ++ ++  F   +   R  P 
Sbjct: 210 HKLLKKNDIDVELHTAGEYKRTLTFLGENTEQGRKKFQEDLNQTHQLFKEFIHIHR--PL 267

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
                ++ G  W G +AK+ GLID VG  +++ 
Sbjct: 268 LDVENVATGEYWYGTQAKEKGLIDEVGVSDDLL 300


>gi|312961376|ref|ZP_07775881.1| peptidase S49 [Pseudomonas fluorescens WH6]
 gi|311285034|gb|EFQ63610.1| peptidase S49 [Pseudomonas fluorescens WH6]
          Length = 342

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 103/254 (40%), Gaps = 12/254 (4%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAG 83
                 D  P V  +   G I+ S  + L   I  +    +    +++ L S GG  ++ 
Sbjct: 84  SKKKQPDAKPRVFVLDFDGDIKASATESLRHEITALLSLATPKDEVVLRLESGGGMVHSY 143

Query: 84  EAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                 + +++     +T    ++AAS GY+++C    I++A  +++GSIGV+ Q P V 
Sbjct: 144 GLASSQLARIRQAGVPLTVCIDKVAASGGYMMACIGEKIISAPFAILGSIGVVAQLPNVN 203

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L K  +  + + +   K   + F E   K  +  Q+ +D ++  F   VS  R  P  
Sbjct: 204 RLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLDITHQLFKNFVSRYR--PQL 261

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               ++ G +W G  A    L+D +   +E   +           ++   +  +     +
Sbjct: 262 AIDEVATGEVWLGVAALDKQLVDELQTSDEYLATKAKTA------EVFHLHYAERKSLQE 315

Query: 263 LKNLSISSLLEDTI 276
              L+ S  ++  +
Sbjct: 316 RVGLAASGSVDRVL 329


>gi|307130981|ref|YP_003882997.1| putative inner membrane peptidase [Dickeya dadantii 3937]
 gi|306528510|gb|ADM98440.1| predicted inner membrane peptidase [Dickeya dadantii 3937]
          Length = 348

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 106/249 (42%), Gaps = 16/249 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGS 79
           +     +   P +  +   G ++  +      E+   +     +D    +++ L SPGG 
Sbjct: 90  AKRGEDKSARPCLYVLDFNGSMDAGEVSSLREEVSAVLAVARPEDE---VLLRLESPGGV 146

Query: 80  AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +        +Q+ + R   +T  V ++AAS GY+++C ++ IVAA  ++VGSIGV+ Q 
Sbjct: 147 VHGYGLAASQLQRFRQRGIRLTVAVDKVAASGGYMMACVADRIVAAPFAIVGSIGVVAQI 206

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P     L    + ++   +   K   + F E   +  +  ++ ++ ++  F + VSE R 
Sbjct: 207 PNFNRLLKSKDIDVELHTAGQYKRTLTLFGENTEEGREKFREELNETHLLFKQFVSEMR- 265

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P      ++ G  W G +AK +GL+D +G  +++  +        +      +   K  
Sbjct: 266 -PSLDIESVATGEHWFGTQAKAMGLVDAIGTSDDLLIAEMENHEVLA----VRYTRRKRL 320

Query: 259 WFCDLKNLS 267
                 +  
Sbjct: 321 LDRLTGSTG 329


>gi|330960941|gb|EGH61201.1| putative inner membrane peptidase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 336

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 104/264 (39%), Gaps = 28/264 (10%)

Query: 34  NSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           +   V  +   G I+ S     +  I  +  ++ D     +++ L S GG  ++      
Sbjct: 89  SKSRVYVLDFDGDIKASATESMRHEITALLTLATDKD--EVVLRLESGGGMVHSYGLASS 146

Query: 89  AIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            + +++     +T    ++AAS GY+++C  N I++A  +++GSIGV+ Q P V   L K
Sbjct: 147 QLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQLPNVNRLLKK 206

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
             +  + + +   K   + F E   K  +  Q  +D ++  F   V+  R  P      +
Sbjct: 207 HDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHELFKNFVASYR--PQLSIDEV 264

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G +W G  A    L+D +   +E             +  ++                 
Sbjct: 265 ATGEVWLGMAAIDKLLVDELKTSDEYLAERAKEADVFHLHYVQR---------------- 308

Query: 268 ISSLLEDTIPLMKQTKVQGLWAVW 291
               L++ + +   T V  + + W
Sbjct: 309 --KSLQERMGMAAATSVDQVASKW 330


>gi|160431862|ref|YP_001551976.1| putative peptidase [Salmonella enterica subsp. enterica serovar
           Choleraesuis]
 gi|260752171|ref|YP_003237686.1| signal peptide peptidase [Escherichia coli O111:H- str. 11128]
 gi|159885403|dbj|BAF93007.1| putative peptidase [Salmonella enterica subsp. enterica serovar
           Choleraesuis]
 gi|257767641|dbj|BAI39135.1| signal peptide peptidase [Escherichia coli O111:H- str. 11128]
          Length = 393

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/367 (16%), Positives = 111/367 (30%), Gaps = 80/367 (21%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNS------PHVARIAIRGQIEDSQE----- 52
           + +   T  V++SL+ L     S  +  +          H+A + I G++    E     
Sbjct: 27  MFRIHTTSKVVISLLALAAAGVSAFNIYDKYQESEGRMDHIAVVRISGEMGTGSEVGDGS 86

Query: 53  -LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI----------- 100
            +   + +   +  A A+I+   S GG       I+R I  +++ +  I           
Sbjct: 87  VIATALAKAYNNPHAKAVIIEAESGGGGPSDAIIIYRQINALRSHQQKIERVSHAESTSK 146

Query: 101 --------------TEVHEMAASAGYLISCASNIIVAAET------------SLVGSIGV 134
                             E++      +  A +    ++              +  S   
Sbjct: 147 PRNTSDHSASRSQADSNAELSKRNTLDVLSAGSGHFISDMENSYKPIIVSVKGICASACY 206

Query: 135 LFQYPYVKPFLD---------------KLGVSIKSV-------KSSPMKAEPSPFSEVNP 172
               P    F D                L   + +V        +   K    P+  ++ 
Sbjct: 207 YAVSPADAIFADSSALTGSIGVRMDHWNLSRVMDTVGVKNEPLTAGEFKDALDPYHPLSD 266

Query: 173 KAVQMMQDVV-DSSYHWFVRLVSESRNIPY-----DKTLVLSDGRIWTGAEAKKVGLIDV 226
                MQ  + D+ +  F+  V + R            + L  GR+WT  +A + GLID 
Sbjct: 267 ATRDFMQKQILDAMHEQFIADVEQGRGKKLLSRPEADAVALYSGRVWTTQQAIRYGLIDG 326

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
                EV   L  +    S    K +N P+      L  L   S   +T+       +  
Sbjct: 327 DLTPVEVRSRLSQM---YSTTIFKTYNEPQRSLRSALGMLMSLSTNVETLAGTTSRILDS 383

Query: 287 LWAVWNP 293
           + A   P
Sbjct: 384 VQATSYP 390


>gi|145570793|gb|ABP79899.1| probable protease [Pseudomonas stutzeri A1501]
          Length = 360

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 109/271 (40%), Gaps = 19/271 (7%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGS 79
           +  +   + S  V  +   G I  S       E+   +   +  D    +++ L S GG 
Sbjct: 100 AKQTKKSETSARVFVLDFDGDIRASAVENLRHEITALLTMATPQDE---VVLRLESGGGM 156

Query: 80  AYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +        + ++++    +T    ++AAS GY+++C  N I+ A  +++GSIGV+ Q 
Sbjct: 157 VHGYGLAASQLVRIRDAGVPLTVCVDKVAASGGYMMACIGNRILTAPFAILGSIGVVAQL 216

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P V   L K  V  + + +   K   + F E   K  +  Q+ +++++  F   V+  R 
Sbjct: 217 PNVHRLLKKHDVDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLETTHELFKNFVARYRQ 276

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
                   ++ G +W G  A    L D +   ++             +  I+  + P+ +
Sbjct: 277 NL--SIDDVATGEVWLGIAALGKHLADELKTSDQYLAERAQEAELFQLHYIQKKSLPERF 334

Query: 259 WFCDLKNLSISSLLE-DTIPLMKQTKVQGLW 288
                  ++ S+++E   +    +   Q  W
Sbjct: 335 ------GMAASTIMEHGLLKGWSRLNEQRFW 359


>gi|237731714|ref|ZP_04562195.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226907253|gb|EEH93171.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 351

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 110/267 (41%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYA 82
                 + P V  +  +G ++  +  +  +       ++       ++V L SPGG  + 
Sbjct: 95  GDSTSSDKPRVWVLDFKGSMDAHE--VSALREEVTAVLAVVKPQDQVVVRLESPGGVVHG 152

Query: 83  GEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  +Q++++++  +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P  
Sbjct: 153 YGLAASQLQRLRDKQIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQIPNF 212

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
             FL    + I+   +   K   +   E   +  Q  ++ ++ ++H F   V   R  P 
Sbjct: 213 NRFLKGKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKDFV--HRMRPT 270

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +A   GL+D +   +EV             R++ +    +     
Sbjct: 271 LDIEQVATGEHWLGQQALANGLVDEINTSDEVI------LGLMEGREVLNVRYLQRKKLM 324

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D    S +   +  +    Q   + L 
Sbjct: 325 DRFTGSAAESADRLLMRWWQRGQKPLM 351


>gi|54309644|ref|YP_130664.1| putative periplasmic protease [Photobacterium profundum SS9]
 gi|46914082|emb|CAG20862.1| putative sohB protein, peptidase U7 family [Photobacterium
           profundum SS9]
          Length = 353

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 97/240 (40%), Gaps = 14/240 (5%)

Query: 40  RIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
            I   G I+  +      E+   I      D    +++ L + GG  +        + ++
Sbjct: 109 VIDFHGSIDAREVSSLREEVSAIIAVAIEGDE---VLLRLETGGGMVHGYGLASSQLDRL 165

Query: 94  KNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           K+        V ++AAS GY+++C ++ I++A  ++VGSIGV+ Q P     L K  +  
Sbjct: 166 KSAGIKLTISVDKVAASGGYMMACVADKIISAPFAIVGSIGVIAQLPNFSKVLKKHDIEF 225

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
           + + +   K   + F E   KA    Q  ++ ++  F   ++  R  P      ++ G  
Sbjct: 226 EQITAGEFKRTLTMFGENTDKARDKFQVEIEETHGLFKDFIAIHR--PELDLEKVATGEH 283

Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
           W G +A  +GL+D +G  ++            ++R +                 +  +LL
Sbjct: 284 WFGNQALNLGLVDEIGTSDDFITHACKDREVLNVRFV--QRKKLAEKLAGATGEAADNLL 341


>gi|283786268|ref|YP_003366133.1| hypothetical protein ROD_25981 [Citrobacter rodentium ICC168]
 gi|282949722|emb|CBG89341.1| hypothetical prophage protein [Citrobacter rodentium ICC168]
          Length = 288

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 87/218 (39%), Gaps = 14/218 (6%)

Query: 38  VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           +A I I+G              +     + +       D   T + + + SPGG      
Sbjct: 71  IAVIPIQGTLVQKLGCLRPYSGMTGYDGIRQTFLTAMADPEITGICLDIDSPGGEVAGCF 130

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +   I   +  KP+   + E A SA Y I+ A++ I    T  VGS+GV+  +      
Sbjct: 131 DLVDEIYSARGDKPIHAILSESAYSAAYAIASAADRICVPRTGGVGSVGVVTMHLDWSQR 190

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           +   G+ +  +     KAE SP+ E++ +A   +Q  +++    FV  V+ +R I     
Sbjct: 191 IMDDGLKVTIITFGSRKAEGSPYKELSDEAFTAIQQDINAMGELFVNTVARNRGISAKVI 250

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
                     G +  ++GL D V   +  ++ L +L  
Sbjct: 251 KNTQAACFMAG-DGVELGLADEVITPDAAFRKLLSLTG 287


>gi|258621801|ref|ZP_05716832.1| sohB protein, peptidase U7 family [Vibrio mimicus VM573]
 gi|258586032|gb|EEW10750.1| sohB protein, peptidase U7 family [Vibrio mimicus VM573]
          Length = 356

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 106/267 (39%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
                   PH+  +   G I        +E +  I  +++      +++ L + GG  + 
Sbjct: 100 GELESKREPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 157

Query: 83  GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P  
Sbjct: 158 YGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 217

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  +  + + +   K   + F E   KA +  +  ++ ++  F   + + R  P 
Sbjct: 218 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKLELEETHQLFKDFIRDHR--PT 275

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +AK +GL+D +   +++             + +      +     
Sbjct: 276 LDLDKVATGEHWFGTQAKTLGLVDEIQTSDDLIVEACK------NKTVLLLRYVQKKKLA 329

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D          ++ +  +     + L 
Sbjct: 330 DKLAGVAGDAADNVLMKLISRGQRPLV 356


>gi|311279820|ref|YP_003942051.1| Peptidase S49 domain-containing protein [Enterobacter cloacae SCF1]
 gi|308749015|gb|ADO48767.1| Peptidase S49 domain protein [Enterobacter cloacae SCF1]
          Length = 347

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 105/243 (43%), Gaps = 14/243 (5%)

Query: 34  NSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           +   V  +  +G ++  +  +  +       ++       +++ L SPGG  +       
Sbjct: 97  DKSRVWVLDFKGSMDAHE--VNALREEVTAVLAVVKPQDQVVLRLESPGGVVHGYGLAAS 154

Query: 89  AIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            +Q++++++      V ++AAS GY+++C  N IV A  +++GSIGV+ Q P    FL  
Sbjct: 155 QLQRLRDKQVPLTIAVDKVAASGGYMMACVGNKIVCAPFAIIGSIGVVAQIPNFNRFLKG 214

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
             + I+   +   K   +   E   +  Q  ++ ++ ++H F   V   R  P      +
Sbjct: 215 KDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKDFVHSMR--PQLDIEQV 272

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G  W G++AK+ GL+D +G  +++   L       +      +   K        + +
Sbjct: 273 ATGEHWYGSQAKEKGLVDDIGTSDDLLLGLMKDHEVLN----VRYLQRKKLLDRVTGSAA 328

Query: 268 ISS 270
            S+
Sbjct: 329 ESA 331


>gi|33151994|ref|NP_873347.1| putative periplasmic protease [Haemophilus ducreyi 35000HP]
 gi|33148216|gb|AAP95736.1| putative secreted protease [Haemophilus ducreyi 35000HP]
          Length = 351

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 98/213 (46%), Gaps = 9/213 (4%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127
           +++ L SPGG  +        +Q++++    +T  V ++AAS GY+++C +N IVAA  +
Sbjct: 139 VLLQLESPGGVVHGYGLAASQLQRLRDHHIPLTVAVDKVAASGGYMMACVANKIVAAPFA 198

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           ++GS+GV+ Q P +  FL K  + +  + +   K   +   E   K  Q  Q  ++ ++ 
Sbjct: 199 ILGSVGVVAQVPNIHRFLKKHEIDVDVMTAGEYKRTVTLAGENTEKGKQKFQQELEETHQ 258

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F + V+ +R  P  +   ++ G  W G +A  + LID +   +++  +          +
Sbjct: 259 LFKQFVANNR--PQLEIEKVATGEHWFGQQALTLNLIDEIATSDDLILNAVK------DK 310

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
           ++      +           +   LE+ I  + 
Sbjct: 311 EVIKLAFKQKKKLAQRLGSQMEQSLENLIAKLL 343


>gi|91228570|ref|ZP_01262490.1| sohB protein, peptidase U7 family protein [Vibrio alginolyticus
           12G01]
 gi|91187894|gb|EAS74206.1| sohB protein, peptidase U7 family protein [Vibrio alginolyticus
           12G01]
          Length = 336

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 101/231 (43%), Gaps = 12/231 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
            S      PH+  +   G I+        +E+   +      D    +++ L S GG  +
Sbjct: 97  GSLDSKREPHLFVLDFNGSIDAKEVASLREEITAILAVAREGDE---VLLRLESGGGMVH 153

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P 
Sbjct: 154 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPN 213

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E   KA    +  ++ ++  F   + E R  P
Sbjct: 214 FNKLLKKHDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHVLFKDFIRERR--P 271

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
                 ++ G  W G +AK++GL+D +   +++  +        S+  ++ 
Sbjct: 272 SLDLDKVATGEHWFGTQAKELGLVDDISTSDDIVVAACKDKTVLSVHYVQK 322


>gi|237721549|ref|ZP_04552030.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449345|gb|EEO55136.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 288

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 80/228 (35%), Gaps = 6/228 (2%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
                 +  VA I + G +   +     +++  IS +      ++ ++ PGG     +  
Sbjct: 63  DDDTLPADSVAVIILEGTLYSWETYRLEKQLRDISDNPKICGAVLWINGPGGMVAHVDLA 122

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF--QYPYVKPF 144
            + I +  + KP+ T V     SA + +  A+     A          +      + + F
Sbjct: 123 AKMIAE--SSKPIATYVAGTMGSAHFWLGTAAGRTFIASPMCEVGSVGIMLTYQSFKEYF 180

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
             +     +    S                 + ++  +   +  F   +S +  I YD  
Sbjct: 181 RKQGIDYREIYPDSADLKNYETRVIEKENNEEPIKQRLAVMHRIFCDAISRNLGIAYDPE 240

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           L L  G+I+TG  A   G ID  G  E+  + + A    + + ++ + 
Sbjct: 241 LPLFRGQIFTGDVAVANGYIDQFGTLEDAVKWVLAQATVRKVNEMYNI 288


>gi|70731028|ref|YP_260769.1| putative periplasmic protease [Pseudomonas fluorescens Pf-5]
 gi|68345327|gb|AAY92933.1| peptidase, U7 family [Pseudomonas fluorescens Pf-5]
          Length = 344

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 104/256 (40%), Gaps = 18/256 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAY 81
                +  P V  +   G I+ S       E+   +   +  D    +++ L S GG  +
Sbjct: 87  KKQPAEAKPRVFVLDFNGDIKASATEGLRHEITALLSLATPKDE---VVLRLESGGGMVH 143

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           +       + +++     +T    ++AAS GY+++C    I++A  +++GSIGV+ Q P 
Sbjct: 144 SYGLASSQLARIRQAGVPLTVCIDKVAASGGYMMACIGEKIISAPFAILGSIGVVAQLPN 203

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           V   L K  +  + + +   K   + F E   K  +  Q+ +D ++  F   VS  R  P
Sbjct: 204 VNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLDVTHQLFKNFVSRYR--P 261

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G +W G  A++  L+D +   +E               ++   +  +    
Sbjct: 262 QLAIDEVATGEVWLGVAAQEKLLVDELQTSDEYLADKAKSA------EVFHLHYAERKSL 315

Query: 261 CDLKNLSISSLLEDTI 276
            +   L+ S  ++  +
Sbjct: 316 QERVGLAASGSIDRVL 331


>gi|307942416|ref|ZP_07657767.1| minor capsid protein C [Roseibium sp. TrichSKD4]
 gi|307774702|gb|EFO33912.1| minor capsid protein C [Roseibium sp. TrichSKD4]
          Length = 281

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 92/220 (41%), Gaps = 17/220 (7%)

Query: 36  PHVARIAIRGQ------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
             VA I++ G             I     +         D    A+ + +SSPGG     
Sbjct: 59  DGVAVISVYGFLVSDLPFHGASWITGYNGIRLAFLAALSDPDIRAIALDVSSPGGMVSGC 118

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
             +   I++ +  KP++  V +++ASA + IS A+ +I    T  VGSIGV+  +     
Sbjct: 119 FELVEFIRQARGEKPIMAIVRDLSASAAFAISSAAEVITVPNTGSVGSIGVVRMHGDFSK 178

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP--- 200
               +G+ +  + S   K + +P+ E+     +  Q  VD+    F   V+  R I    
Sbjct: 179 MFSDVGLKVTLIHSGARKVDGNPYQELPDTVRESWQASVDAVRDLFADHVAAGRGIDRQT 238

Query: 201 -YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +    L DG +     A+++GLID +   ++ + SL  
Sbjct: 239 VLETEAELYDGPLNLAR-AREIGLIDQIMSPDKAFASLIE 277


>gi|258626255|ref|ZP_05721102.1| sohB protein, peptidase U7 family [Vibrio mimicus VM603]
 gi|258581307|gb|EEW06209.1| sohB protein, peptidase U7 family [Vibrio mimicus VM603]
          Length = 356

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 106/267 (39%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
                   PH+  +   G I        +E +  I  +++      +++ L + GG  + 
Sbjct: 100 GELESKREPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 157

Query: 83  GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P  
Sbjct: 158 YGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 217

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  +  + + +   K   + F E   KA +  +  ++ ++  F   + + R  P 
Sbjct: 218 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKLELEETHQLFKDFIRDHR--PA 275

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +AK +GL+D +   +++             + +      +     
Sbjct: 276 LDLDKVATGEHWFGTQAKTLGLVDEIQTSDDLIVEACK------NKTVLLLRYVQKKKLA 329

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D          ++ +  +     + L 
Sbjct: 330 DKLAGVAGDAADNVLMKLISRGQRPLV 356


>gi|66045696|ref|YP_235537.1| putative periplasmic protease [Pseudomonas syringae pv. syringae
           B728a]
 gi|63256403|gb|AAY37499.1| Peptidase S49 [Pseudomonas syringae pv. syringae B728a]
 gi|330971283|gb|EGH71349.1| putative inner membrane peptidase [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 340

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 102/271 (37%), Gaps = 15/271 (5%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGG 78
                    +    V  +   G I+ S     +  I  +  ++ D     +++ L S GG
Sbjct: 79  ALKKEKKHAEPKARVYVLDFDGDIKASATESMRHEITALLTLATDKD--EVVLRLESGGG 136

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
             ++       + +++     +T    ++AAS GY+++C  N I++A  +++GSIGV+ Q
Sbjct: 137 MVHSYGLASSQLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQ 196

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
            P V   L K  +  + + +   K   + F E   K  +  Q  +D ++  F   V+  R
Sbjct: 197 LPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASYR 256

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
             P      ++ G +W G  A    L+D +   +E             +  +      + 
Sbjct: 257 --PQLSIDEVATGEVWLGMAAVDKLLVDELKTSDEYLAERARNADVFHLHYV-----QRK 309

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                +   + +S  +       +   Q  W
Sbjct: 310 SLQERMGMAAATSADQLATKWWGRLTQQRFW 340


>gi|332768316|gb|EGJ98501.1| peptidase S49 family protein [Shigella flexneri 2930-71]
          Length = 467

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 86/217 (39%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + S GG A  
Sbjct: 42  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADTQVRGVLLDIDSSGGQATG 101

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++  KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 102 AFDCADMIYRLRQLKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMGHVSYA 161

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + +   K + + F  +  K  Q MQ  +D++   F   V+    +  D
Sbjct: 162 GHLAQAGVDITLIYAGSHKVDGNQFESLPAKVRQDMQQRIDAARRMFAEKVAMYTGLSVD 221

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +   +  ++ G    +  L D +    +    + A
Sbjct: 222 AVMGT-EAAVFEGQSGIEAELADELINASDAISVMAA 257


>gi|268589496|ref|ZP_06123717.1| peptidase, S49 family [Providencia rettgeri DSM 1131]
 gi|291315164|gb|EFE55617.1| peptidase, S49 family [Providencia rettgeri DSM 1131]
          Length = 348

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 113/265 (42%), Gaps = 14/265 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQELIERIERISR----DDSATALIVSLSSPGGSAYAGE 84
                  P +  +  +G   D++E+    E IS      D    +++ L SPGG  +   
Sbjct: 93  GQTGVKKPCLYVLDFKGS-MDAREVASLREEISAILAVADQQDEVLLRLESPGGMVHGYG 151

Query: 85  AIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                + ++K +       V ++AAS GY+++C ++ I+AA  +++GSIGV+ Q P +  
Sbjct: 152 LAASQLLRIKEKNIPLTIAVDKVAASGGYMMACIADKIIAAPFAIIGSIGVVAQIPNIHR 211

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K  V ++   +   K   +   E   +  +   + ++S++  F + V ++R  P   
Sbjct: 212 LLKKHDVDVELHTAGEYKRTLTMLGENTEQGRKKFVEDLNSTHELFKQFVHQNR--PSLD 269

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G++A   GL+D +G  ++   +          ++I       +    D 
Sbjct: 270 ISAVATGEYWYGSQALDKGLVDNIGVSDDFIINAI------DTKEIVSIRYVLSKKMMDK 323

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +  +++ +    Q   + L 
Sbjct: 324 FMGSAAKSVDNLLLRWWQRGQKPLL 348


>gi|90408618|ref|ZP_01216772.1| possible protease SohB [Psychromonas sp. CNPT3]
 gi|90310262|gb|EAS38393.1| possible protease SohB [Psychromonas sp. CNPT3]
          Length = 349

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/267 (22%), Positives = 113/267 (42%), Gaps = 12/267 (4%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATA-LIVSLSSPGGSAYA 82
           +     E     +  I  +G I+  +   L E I  I    SA   + V L S GG  + 
Sbjct: 90  AKKGDFEAPEAQLYVIDFKGSIDAKEVSSLREEISAILSVASAQDEVFVRLESGGGMVHG 149

Query: 83  GEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  +Q++  N   +   V ++AAS GY+++C ++ I+AA  +++GSIGV+ Q P  
Sbjct: 150 YGLAASQLQRLKDNNISLTISVDKVAASGGYMMACIADKIIAAPFAILGSIGVIAQIPNF 209

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  +  + + +   K   + F E +       +  +  ++  F + VS+ R  P 
Sbjct: 210 NKLLKKHDIEFEQLTAGQYKRTLTMFGENDDLGRDKFKQELQETHDLFKQFVSQHR--PN 267

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +A ++ LID +   ++    L      + + +IK     K     
Sbjct: 268 LDMEKIATGEHWYGLQAIELDLIDKIQTSDD---YLMQQLGKRHVVQIKYSKHKK---LT 321

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           +    + S  LE+++  + Q  ++   
Sbjct: 322 EKFGHAASLALENSLLKLMQVNLKNFI 348


>gi|28869915|ref|NP_792534.1| peptidase, U7 family [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28853160|gb|AAO56229.1| peptidase, U7 family [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331014356|gb|EGH94412.1| putative inner membrane peptidase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 340

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 102/262 (38%), Gaps = 15/262 (5%)

Query: 33  DNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           +    V  +   G I+ S     +  I  +  ++ D     +++ L S GG  ++     
Sbjct: 88  EPKARVYVLDFDGDIKASATESMRHEITALLTLATDKD--EVVLRLESGGGMVHSYGLAS 145

Query: 88  RAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
             + +++     +T    ++AAS GY+++C  N I++A  +++GSIGV+ Q P V   L 
Sbjct: 146 SQLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQLPNVNRLLK 205

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           K  +  + + +   K   + F E   K  +  Q  +D ++  F   V+  R  P      
Sbjct: 206 KHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASYR--PQLSIDE 263

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           ++ G +W G  A    L+D +   +E             +  +      +      +   
Sbjct: 264 VATGEVWLGMAAVDKLLVDELKTSDEYLAERARQADVFHLHYV-----QRKSLQERMGMA 318

Query: 267 SISSLLEDTIPLMKQTKVQGLW 288
           + +S  +       +   Q  W
Sbjct: 319 AANSADQLATKWWGRLTQQRFW 340


>gi|299530356|ref|ZP_07043781.1| phage minor capsid protein C, putative [Comamonas testosteroni S44]
 gi|298721727|gb|EFI62659.1| phage minor capsid protein C, putative [Comamonas testosteroni S44]
          Length = 314

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 100/215 (46%), Gaps = 14/215 (6%)

Query: 38  VARIAIRG-------------QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           V  + I G              +   + +  +++    DD+   + + + SPGGSA    
Sbjct: 74  VYVLPIHGALVSRSAHMDMCTTMTSYEGIRTQLQAALADDAVEHVALDVDSPGGSATGMT 133

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +   I   ++ KP+   V+    SA Y ++ A+N IV +++S VGSIGV+ ++  +   
Sbjct: 134 DLAEEIFAARSIKPITAIVNFSCYSAAYGLASAANEIVLSKSSGVGSIGVIARHVDMSKR 193

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
            ++ G+ + ++ +   KA+ +  + ++ +A Q + ++V  +Y  F  LV+ +R +     
Sbjct: 194 YEEQGIKVTTIFAGARKADLASDAPLSTEAAQWLNELVQQNYAEFTELVARNRGLTVAAV 253

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
                G ++ G +  ++GL D +   +     + A
Sbjct: 254 RGTEAG-VYFGGKGIELGLADRIEPPQAAINRIAA 287


>gi|333021224|gb|EGK40478.1| head-tail preconnector protein GP5 [Shigella flexneri K-304]
          Length = 467

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 86/217 (39%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + S GG A  
Sbjct: 42  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADTQVRGVLLDIDSSGGQATG 101

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++  KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 102 AFDCADMIYRLRQLKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMGHVSYA 161

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + +   K + + F  +  K  Q MQ  +D++   F   V+    +  D
Sbjct: 162 GHLAQAGVDITLIYAGSHKVDGNQFESLPAKVRQDMQQRIDAARRMFAEKVAMYTGLSVD 221

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +   +  ++ G    +  L D +    +    + A
Sbjct: 222 AVMGT-EAAVFEGQSGIEAELADELINASDAISVMAA 257


>gi|323174539|gb|EFZ60162.1| head-tail preconnector protein GP5 [Escherichia coli LT-68]
          Length = 402

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 84/193 (43%), Gaps = 1/193 (0%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           +     ++  +++   D     +++ + SPGG A         I +++  KPV    ++ 
Sbjct: 1   MTGYDGIVACLQQAMADTQVRGVLLDIDSPGGQATGAFDCADMIYRLRQLKPVWALCNDT 60

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           A SA  L++ A +  +  +TS +GSIGV+  +      L + GV I  + +   K + + 
Sbjct: 61  ACSAAMLLASACSRRLVTQTSRIGSIGVMMGHVSYAGHLAQAGVDITLIYAGSHKVDGNQ 120

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
           F  +  K  Q MQ  +D++   F   V+    +  D  +  ++  ++ G    + GL D 
Sbjct: 121 FESLPAKVRQDMQQRIDAARRMFAEKVAMYTGLSVDAVMG-TEAAVFEGQSGIEAGLADE 179

Query: 227 VGGQEEVWQSLYA 239
           +    +    + A
Sbjct: 180 LINASDAISVMAA 192


>gi|167574265|ref|ZP_02367139.1| phage minor capsid protein C, putative [Burkholderia oklahomensis
           C6786]
          Length = 322

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 89/194 (45%), Gaps = 1/194 (0%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            +   + L   + +   D +   +++ + S GGSA     +   I+     KP+   V+ 
Sbjct: 99  PMTSYEGLRTSVNQAVADPAVEHIVLDIDSNGGSATGAFELADDIRAASLVKPITAIVNF 158

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
            A S GYLI+ A++ ++ + TS +GSIGV+  +  V    ++ G+ + SV +   K + +
Sbjct: 159 SAFSGGYLIAAAASNVIVSRTSGIGSIGVIANHLDVSKRDEQQGIKVTSVFAGDHKNDLT 218

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   ++ +++  +  +V +SY  FV  ++  R +          G I+ G +    GL D
Sbjct: 219 PHEPLSDQSLTFLTSMVQNSYKQFVDAIANFRGLSTQAVKDTQAG-IFFGQKGVDAGLAD 277

Query: 226 VVGGQEEVWQSLYA 239
            V   +     + A
Sbjct: 278 SVETPQAAINRIAA 291


>gi|262171927|ref|ZP_06039605.1| SohB protein peptidase U7 family [Vibrio mimicus MB-451]
 gi|261893003|gb|EEY38989.1| SohB protein peptidase U7 family [Vibrio mimicus MB-451]
          Length = 353

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 106/267 (39%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
                   PH+  +   G I        +E +  I  +++      +++ L + GG  + 
Sbjct: 97  GELESKREPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 154

Query: 83  GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P  
Sbjct: 155 YGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 214

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  +  + + +   K   + F E   KA +  +  ++ ++  F   + + R  P 
Sbjct: 215 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKLELEETHQLFKDFIRDHR--PA 272

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +AK +GL+D +   +++             + +      +     
Sbjct: 273 LDLDKVATGEHWFGTQAKTLGLVDEIQTSDDLIVEACK------NKTVLLLRYVQKKKLA 326

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D          ++ +  +     + L 
Sbjct: 327 DKLAGVAGDAADNVLMKLISRGQRPLV 353


>gi|300716945|ref|YP_003741748.1| peptidase, family U7 [Erwinia billingiae Eb661]
 gi|299062781|emb|CAX59901.1| Peptidase, family U7 [Erwinia billingiae Eb661]
          Length = 349

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 116/265 (43%), Gaps = 16/265 (6%)

Query: 30  HVEDNSPHVARIAIRG-----QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
             E   P +  +  +G     ++   +E +  +  +++      +++ L SPGG  +   
Sbjct: 95  KSESTKPTLYVLDFKGSMDAHEVSSLREEVSAVMAVAK--PQDEVLLRLESPGGVVHGYG 152

Query: 85  AIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+++++   +T  V ++AAS GY+++C ++ IVAA  S+VGSIGV+ Q P    
Sbjct: 153 LASSQLQRLRDKGIRLTVAVDKVAASGGYMMACVADRIVAAPFSIVGSIGVVAQIPNFNR 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L +  + ++   +   K   + F E   +  +  ++ ++ ++  F + V + R  P   
Sbjct: 213 LLKRNEIDVELHTAGEYKRTLTLFGENTEQGREKFREDLNETHLLFKQFVHQMR--PSLD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +A + GL+D +G  +++           +  ++      +     D 
Sbjct: 271 IDSVATGEHWFGTQALEKGLVDAIGTSDDLIID------QMANHEVISVRFTRRKKMIDR 324

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288
              S +   E  +  + Q   + L 
Sbjct: 325 FTQSAAGSAERLLLRLWQRGEKPLL 349


>gi|224583792|ref|YP_002637590.1| periplasmic protease [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224468319|gb|ACN46149.1| putative protease [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 348

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 16/250 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSAY 81
                 + P V  I  +G ++  +  +  +                A++  L SPGG  +
Sbjct: 92  GDIATSDKPRVWVIDFKGSMDAHE--VNALREEVTAVLAVAKPGDRAVV-RLESPGGVVH 148

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   +Q+++++   +T    ++AAS GY+++C +  I+AA  ++VGSIGV+ Q P 
Sbjct: 149 GYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPN 208

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
              FL    + I+   +   K   +   E   +  Q  ++ ++ ++H F   V   R  P
Sbjct: 209 FNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMR--P 266

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +A + GL+D +   +EV   L       +      +   K    
Sbjct: 267 ALDIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLMEGREVLN----VRYMQRKKLID 322

Query: 261 CDLKNLSISS 270
               + + S+
Sbjct: 323 RVTGSAAESA 332


>gi|291085291|ref|ZP_06352653.2| SohB protein, peptidase U7 family [Citrobacter youngae ATCC 29220]
 gi|291071517|gb|EFE09626.1| SohB protein, peptidase U7 family [Citrobacter youngae ATCC 29220]
          Length = 351

 Score = 83.9 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 113/265 (42%), Gaps = 19/265 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYA 82
                 + P V  +  +G ++  +  +  +       ++       ++V L SPGG  + 
Sbjct: 95  GDSSSSDKPRVWVLDFKGSMDAHE--VSALREEVTAVLAVVKPQDQVVVRLESPGGVVHG 152

Query: 83  GEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  +Q++++++  +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P  
Sbjct: 153 YGLAASQLQRLRDKQIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQIPNF 212

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
             FL    + I+   +   K   +   E   +  Q  ++ ++ ++H F   V   R  P 
Sbjct: 213 NRFLKGKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKDFVQRMR--PA 270

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +A   GL+D +   +EV  +L      + +  ++     K     
Sbjct: 271 LDIEQVATGEHWFGQQALANGLVDEINTSDEVILALME---GREVLSVRYIQRKK----- 322

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQG 286
            L +    S  E    L+ +   +G
Sbjct: 323 -LMDRFTGSAAESADRLLLRWWQRG 346


>gi|331233637|ref|XP_003329479.1| protease IV [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309308469|gb|EFP85060.1| protease IV [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 563

 Score = 83.9 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 9/187 (4%)

Query: 37  HVARIAIRGQIED-----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
           +V  + + G I D     +  +++ +   + DDS  A+++ + S GG     + I+ A++
Sbjct: 120 NVGVVYVLGTIGDMGEFGTSAIVKGLHEAADDDSIGAVVLRIDSGGGGVVESDTIWGAVK 179

Query: 92  KVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY-VKPFLDKLG 149
            +K + K VI      AAS GYLI+  ++ I A+++++ GSIGV    P     FLD+L 
Sbjct: 180 ALKAKGKVVIASFGNAAASGGYLIATHADSIFASQSTITGSIGVASLRPTVTTSFLDRLK 239

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           ++ +S  +           E                   F   V E RNI  +   VL+ 
Sbjct: 240 LTTQSFFTGSNALSLYHELEGEQMERHKAHIDSAYHD--FKERVCEGRNISPELIEVLAG 297

Query: 210 GRIWTGA 216
           GR++TG 
Sbjct: 298 GRVYTGQ 304


>gi|270159903|ref|ZP_06188559.1| S49 family peptidase [Legionella longbeachae D-4968]
 gi|289165342|ref|YP_003455480.1| inner membrane peptidase [Legionella longbeachae NSW150]
 gi|269988242|gb|EEZ94497.1| S49 family peptidase [Legionella longbeachae D-4968]
 gi|288858515|emb|CBJ12396.1| putative inner membrane peptidase [Legionella longbeachae NSW150]
          Length = 312

 Score = 83.9 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 11/251 (4%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSS 75
            L         H  +  P +  I   G I+ S  ++L E I  +    +    ++V L S
Sbjct: 59  ILGKKIPKKKKHKNEEQPTLYVIDFHGDIKASQVEQLREEINALLCTATPRDEVLVRLDS 118

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           PGG   +       +Q++++R       + +MAAS GYL++C +N ++AA  +++GSIGV
Sbjct: 119 PGGIVNSYGLAASQLQRIRDRNIPLTVSIDKMAASGGYLMACVANQVIAAPFAIIGSIGV 178

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           + Q P    +L K  + ++ + +   K   + F E   K  +  QD ++  +  F   V+
Sbjct: 179 VAQIPNFHRWLKKHDIDVELLTAGEYKRTLTLFGENTEKGREKAQDDLEKIHAAFRNYVA 238

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
            +R         +S G  W   +A  + LID +   ++       L    S +  K   P
Sbjct: 239 ANR--DQLDIDKVSTGEHWLAKDAFDLKLIDKLCTSDDYL-----LEKISSYKAFKLTVP 291

Query: 255 PKNYWFCDLKN 265
           PK +    L  
Sbjct: 292 PKTFLANKLLK 302


>gi|56413358|ref|YP_150433.1| periplasmic protease [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362282|ref|YP_002141919.1| periplasmic protease [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127615|gb|AAV77121.1| putative protease [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197093759|emb|CAR59233.1| putative protease [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 348

 Score = 83.9 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 16/250 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSAY 81
                 + P V  I  +G ++  +  +  +                A++  L SPGG  +
Sbjct: 92  GDIATSDKPRVWVIDFKGSMDAHE--VNALREEVTAVLAVAKPGDRAVV-RLESPGGVVH 148

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   +Q+++++   +T    ++AAS GY+++C +  I+AA  ++VGSIGV+ Q P 
Sbjct: 149 GYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPN 208

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
              FL    + I+   +   K   +   E   +  Q  ++ ++ ++H F   V   R  P
Sbjct: 209 FNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMR--P 266

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +A + GL+D +   +EV   L       +      +   K    
Sbjct: 267 ALDIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLMEGREVLN----VRYMQRKKLID 322

Query: 261 CDLKNLSISS 270
               + + S+
Sbjct: 323 RVTGSAAESA 332


>gi|218549037|ref|YP_002382828.1| periplasmic protease [Escherichia fergusonii ATCC 35469]
 gi|218356578|emb|CAQ89201.1| putative inner membrane peptidase [Escherichia fergusonii ATCC
           35469]
          Length = 349

 Score = 83.9 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 109/267 (40%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYA 82
              +  + P V  +  +G ++  +  +  +       ++       ++V L SPGG  + 
Sbjct: 93  GETLSSDKPRVWVLDFKGSMDAHE--VTALREEITAVLAVYKPQDQVVVRLESPGGVVHG 150

Query: 83  GEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  +Q++++    +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P  
Sbjct: 151 YGLAASQLQRLRDHNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQLPNF 210

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
             FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P 
Sbjct: 211 NRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHLLFKDFVKRMR--PS 268

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +A + GL+D +   ++V             R++ +    +     
Sbjct: 269 LDIDQVATGEHWYGQQALEKGLVDEINTSDDVI------LGLMDGREVVNVRYMQRKKLL 322

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D    S +   +  +    Q   + L 
Sbjct: 323 DRFTGSAAESADRLLLRWWQRGQKPLM 349


>gi|56460146|ref|YP_155427.1| putative periplasmic protease [Idiomarina loihiensis L2TR]
 gi|56179156|gb|AAV81878.1| Periplasmic serine protease, ClpP family [Idiomarina loihiensis
           L2TR]
          Length = 332

 Score = 83.9 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 109/249 (43%), Gaps = 16/249 (6%)

Query: 31  VEDNSPHVARIAIRGQIEDSQEL------IERIERISRDDSATALIVSLSSPGGSAYAGE 84
           V++    +  I  +G   D++E+      +  I  ++ +     ++V L S GG      
Sbjct: 81  VQNKEKRLFVIDFKGS-MDAKEVDSLRHEVNAILNLATEKD--EVLVRLESGGGVVNGYG 137

Query: 85  AIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                + +++     +   + ++AAS GY+++C  + ++AA  + +GSIGV+ Q P    
Sbjct: 138 LAAAQLLRLREHNLTVNVAIDKVAASGGYMMACVGHKLMAAPFAFIGSIGVVAQIPNFHR 197

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K  V  + + +   K   + F E   +  +  +  +++ +  F   V E+R      
Sbjct: 198 LLKKHNVDFEQLTAGEYKRTLTIFGENTDEGRRKFKQDLEAIHRQFKSFVQENR--SELD 255

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD-WNPPKNYWFCD 262
              ++ G +W+G EAK++GLID V   +     L        + K++     P +  F  
Sbjct: 256 IDKVATGEVWSGQEAKELGLIDEVITSD---AWLMKQHKGFDVLKLQYVIRKPLSERFAK 312

Query: 263 LKNLSISSL 271
             ++ I +L
Sbjct: 313 GMSVIIHTL 321


>gi|24112121|ref|NP_706631.1| head-tail preconnector gp5 [Shigella flexneri 2a str. 301]
 gi|30062238|ref|NP_836409.1| head-tail preconnector gp5 [Shigella flexneri 2a str. 2457T]
 gi|24050954|gb|AAN42338.1| head-tail preconnector gp5 [Shigella flexneri 2a str. 301]
 gi|30040483|gb|AAP16215.1| head-tail preconnector gp5 [Shigella flexneri 2a str. 2457T]
 gi|281600080|gb|ADA73064.1| Head-tail preconnector gp5 [Shigella flexneri 2002017]
 gi|313649543|gb|EFS13973.1| head-tail preconnector protein [Shigella flexneri 2a str. 2457T]
 gi|332761373|gb|EGJ91659.1| head-tail preconnector protein GP5 [Shigella flexneri 2747-71]
 gi|332763428|gb|EGJ93668.1| head-tail preconnector protein GP5 [Shigella flexneri K-671]
          Length = 501

 Score = 83.9 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 86/217 (39%), Gaps = 14/217 (6%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + S GG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADTQVRGVLLDIDSSGGQATG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++  KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQLKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMGHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + GV I  + +   K + + F  +  K  Q MQ  +D++   F   V+    +  D
Sbjct: 196 GHLAQAGVDITLIYAGSHKVDGNQFESLPAKVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
             +   +  ++ G    +  L D +    +    + A
Sbjct: 256 AVMGT-EAAVFEGQSGIEAELADELINASDAISVMAA 291


>gi|16760164|ref|NP_455781.1| periplasmic protease [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16765060|ref|NP_460675.1| periplasmic protease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29142065|ref|NP_805407.1| periplasmic protease [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|62180283|ref|YP_216700.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161613795|ref|YP_001587760.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167549776|ref|ZP_02343534.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167993770|ref|ZP_02574863.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168230154|ref|ZP_02655212.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168237768|ref|ZP_02662826.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168241294|ref|ZP_02666226.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168260063|ref|ZP_02682036.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168462810|ref|ZP_02696741.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168819538|ref|ZP_02831538.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194449361|ref|YP_002045763.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194469745|ref|ZP_03075729.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194735219|ref|YP_002114748.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197247759|ref|YP_002146310.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197265745|ref|ZP_03165819.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|198243766|ref|YP_002215425.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|204927734|ref|ZP_03218935.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205352610|ref|YP_002226411.1| periplasmic protease [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|213582175|ref|ZP_03364001.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213647994|ref|ZP_03378047.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213855228|ref|ZP_03383468.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|238911892|ref|ZP_04655729.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|25512261|pir||AD0654 probable protease STY1334 [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16420246|gb|AAL20634.1| putative peptidase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16502458|emb|CAD08415.1| putative protease [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29137694|gb|AAO69256.1| putative protease [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|62127916|gb|AAX65619.1| putative peptidase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161363159|gb|ABX66927.1| hypothetical protein SPAB_01529 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194407665|gb|ACF67884.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194456109|gb|EDX44948.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194710721|gb|ACF89942.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195634032|gb|EDX52384.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197211462|gb|ACH48859.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197244000|gb|EDY26620.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197289292|gb|EDY28659.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197938282|gb|ACH75615.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|204323076|gb|EDZ08272.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205272391|emb|CAR37271.1| putative protease [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205325030|gb|EDZ12869.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205328266|gb|EDZ15030.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205335298|gb|EDZ22062.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205339594|gb|EDZ26358.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205343732|gb|EDZ30496.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205351232|gb|EDZ37863.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|261246906|emb|CBG24723.1| putative protease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993661|gb|ACY88546.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158244|emb|CBW17743.1| putative protease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912709|dbj|BAJ36683.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320085785|emb|CBY95561.1| putative protease [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321224347|gb|EFX49410.1| putative protease sohB [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322614975|gb|EFY11900.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322621431|gb|EFY18285.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623227|gb|EFY20069.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628517|gb|EFY25305.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633681|gb|EFY30421.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638511|gb|EFY35206.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640819|gb|EFY37468.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645317|gb|EFY41845.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651800|gb|EFY48172.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654303|gb|EFY50625.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322662730|gb|EFY58937.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667659|gb|EFY63819.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671927|gb|EFY68048.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322677027|gb|EFY73091.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680311|gb|EFY76350.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685260|gb|EFY81256.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322714757|gb|EFZ06328.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323129988|gb|ADX17418.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323195430|gb|EFZ80609.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199319|gb|EFZ84413.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204777|gb|EFZ89773.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323205927|gb|EFZ90890.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323220715|gb|EGA05160.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225564|gb|EGA09792.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323232116|gb|EGA16223.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323234643|gb|EGA18730.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238095|gb|EGA22154.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243301|gb|EGA27320.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248442|gb|EGA32377.1| putative inner membrane peptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252548|gb|EGA36391.1| putative inner membrane peptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255427|gb|EGA39193.1| putative inner membrane peptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260829|gb|EGA44431.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267584|gb|EGA51067.1| putative inner membrane peptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270950|gb|EGA54386.1| putative inner membrane peptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326623172|gb|EGE29517.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326627673|gb|EGE34016.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332988605|gb|AEF07588.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 348

 Score = 83.9 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 16/250 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSAY 81
                 + P V  I  +G ++  +  +  +                A++  L SPGG  +
Sbjct: 92  GDIATSDKPRVWVIDFKGSMDAHE--VNALREEVTAVLAVAKPGDRAVV-RLESPGGVVH 148

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   +Q+++++   +T    ++AAS GY+++C +  I+AA  ++VGSIGV+ Q P 
Sbjct: 149 GYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPN 208

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
              FL    + I+   +   K   +   E   +  Q  ++ ++ ++H F   V   R  P
Sbjct: 209 FNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMR--P 266

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +A + GL+D +   +EV   L       +      +   K    
Sbjct: 267 ALDIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLMEGREVLN----VRYMQRKKLID 322

Query: 261 CDLKNLSISS 270
               + + S+
Sbjct: 323 RVTGSAAESA 332


>gi|152969822|ref|YP_001334931.1| putative periplasmic protease [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|330002600|ref|ZP_08304369.1| putative signal peptide peptidase SppA [Klebsiella sp. MS 92-3]
 gi|150954671|gb|ABR76701.1| putative peptidase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|328537251|gb|EGF63511.1| putative signal peptide peptidase SppA [Klebsiella sp. MS 92-3]
          Length = 360

 Score = 83.9 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 105/250 (42%), Gaps = 16/250 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
            +   +  P    +  +G ++        +E+   +      D    +++ L SPGG  +
Sbjct: 104 GNAEPEGKPRAWVLDFKGSMDAHEVNSLREEITAVLAAAKARDQ---VVIRLESPGGVVH 160

Query: 82  AGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   +Q++++++      V ++AAS GY+++C +N IV+A  +++GSIGV+ Q P 
Sbjct: 161 GYGLAASQLQRLRDKQIPLTVSVDKVAASGGYMMACVANKIVSAPFAILGSIGVVAQIPN 220

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           +  FL    + I+   +   K   +   E   +  +  ++ ++ ++H F   V   R  P
Sbjct: 221 LHRFLKNKDIDIELHTAGQYKRTLTMLGENTEEGRRKFREDLNETHHLFKDFV--HRMRP 278

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +A + GL+D V   +E+   L              +   K    
Sbjct: 279 GLDIEQVATGEHWYGVQALEKGLVDAVETSDELLLGLMESHEVIG----VRYQQRKKMLD 334

Query: 261 CDLKNLSISS 270
               + S S+
Sbjct: 335 RFTGSASESA 344


>gi|150396862|ref|YP_001327329.1| peptidase S49 [Sinorhizobium medicae WSM419]
 gi|150028377|gb|ABR60494.1| peptidase S49 [Sinorhizobium medicae WSM419]
          Length = 301

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 89/213 (41%), Gaps = 14/213 (6%)

Query: 38  VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           +A I I G              +   + +  ++      D   A++  + S GG      
Sbjct: 79  IALIEIEGSLVNKGKWIGKSCGMTSYEAIGVQVRDCIERDDIKAVVFEVDSYGGEVTGAF 138

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
                I ++   KP I  + + A SAGYL++     +V  +T + GSIGV+  +  +  +
Sbjct: 139 DCAELIFELSQVKPTIAVLTDHACSAGYLLASPCRQLVIPQTGICGSIGVISMHVDMSAW 198

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K G+ +  +K+   KA+ +P+  +    +Q     ++     F   V+  R     + 
Sbjct: 199 LAKEGLKVTILKAGEHKADFNPYEAIPDDVLQQELAELEELRVEFAATVARYRAGRLTQQ 258

Query: 205 LVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
             L ++ R++ G +A   GL D V    +V ++
Sbjct: 259 SALATEARVYRGQKAVDAGLADAVARPSQVLEA 291


>gi|58698082|ref|ZP_00373006.1| hypothetical protein WwAna1566 [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630941|ref|YP_002727732.1| minor capsid protein C, putative [Wolbachia sp. wRi]
 gi|58535439|gb|EAL59514.1| hypothetical protein WwAna1566 [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592922|gb|ACN95941.1| minor capsid protein C, putative [Wolbachia sp. wRi]
          Length = 360

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 101/231 (43%), Gaps = 14/231 (6%)

Query: 31  VEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPG 77
           V ++   +  I I G              +   +++ E IE    D+    +I+ + SPG
Sbjct: 35  VRNSERGIKVIPIHGILTKKSEAFDDVLGMTSYEKIREEIEEALIDEEVETIILDIDSPG 94

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G   +   +   I + +  K ++   ++ A SA Y I+ ++  ++   TS VGSIGV+  
Sbjct: 95  GEVNSLFDLSDFIYEARGLKKIVAIANDDAYSAAYAIASSAEKVLVTRTSGVGSIGVIAS 154

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +     F +K G+   +V +   K + +P   +  ++++ +Q+ V   Y  FV LV+ +R
Sbjct: 155 HIDQSGFDEKQGIKYTTVFAGSRKNDLNPHEPITSESLESLQEEVGRLYEMFVELVARNR 214

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           N+  +       G  + G +A ++GL D V    E       +   +   K
Sbjct: 215 NLSTETIKSTEAGLYF-GEKAIEIGLADEVITYSEFIDRRNNMSKAEFNYK 264


>gi|332184305|gb|AEE26559.1| peptidase family S49 protein [Francisella cf. novicida 3523]
          Length = 338

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 101/251 (40%), Gaps = 12/251 (4%)

Query: 29  SHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
              +     V  I  +G I     E+ +  +  I  +   +    +IV + SPGG     
Sbjct: 86  DKQDKPKQKVFVINFKGDIHASQVENLRNEVSAILAVVNTED--EVIVRIDSPGGVVNGY 143

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYVK 142
                 +++++     +T   +  A++G  +  A  + I+AA  ++VGSIGV+   P ++
Sbjct: 144 GFAAAQLERIRQAGINLTVCIDQVAASGGYMMSAVAHKIIAAPFAIVGSIGVVGTIPNIR 203

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L+K G++++   S   K   +       +     +  ++S +  F + +   R  P  
Sbjct: 204 ELLEKNGINVEMHTSGEYKRTLTTVGINTEEGRNKFKQDLESIHQLFKKHILVYR--PSL 261

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               ++ G  W G +A ++GL+D +   ++    L  L     + ++      +  +   
Sbjct: 262 NINKVATGEYWFGKDALELGLVDKIQTYDDYLIDL--LNKHHDVYEVSYVIKKEKGFLRS 319

Query: 263 LKNLSISSLLE 273
             ++   ++  
Sbjct: 320 KLSMLKRTMTN 330


>gi|145300014|ref|YP_001142855.1| periplasmic protease [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852786|gb|ABO91107.1| probable protease sohB [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 335

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 111/259 (42%), Gaps = 14/259 (5%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA----TALIVSLSSPGGSAYAGEA 85
             ED    +  +   G   D++E+    E +S           +++ L S GG  +    
Sbjct: 83  KTEDERSRLFVLDFNGS-MDAKEVASLREEVSAVIGVAQSGDEVLLRLESGGGVVHGYGL 141

Query: 86  IFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
               +Q+++++   +T  + ++AAS GY+++C ++ I+AA  ++VGSIGV+ Q P     
Sbjct: 142 AASQLQRLRDKGIKLTVAIDKVAASGGYMMACVADQILAAPFAIVGSIGVIAQLPNFNKL 201

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K  +  +   +   K   + F E +    +  ++ + + +  F   V+E R  P+   
Sbjct: 202 LKKHDIEFEMHTAGQYKRTITMFGENDDLGREKFREELGAIHERFKAFVAEHR--PHLDI 259

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             ++ G  W  ++AK +GL+D +   ++       L    +  K+   +  K        
Sbjct: 260 DSVTTGEHWLASQAKGLGLVDTLCTSDDY------LLAQANHHKVVGISYRKPKSLTQKL 313

Query: 265 NLSISSLLEDTIPLMKQTK 283
               +  LE ++  + Q  
Sbjct: 314 GQQAALALESSLGRLWQQS 332


>gi|303245382|ref|ZP_07331666.1| peptidase S49 [Desulfovibrio fructosovorans JJ]
 gi|302493231|gb|EFL53093.1| peptidase S49 [Desulfovibrio fructosovorans JJ]
          Length = 448

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 80/216 (37%), Gaps = 24/216 (11%)

Query: 37  HVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
           +VA I + G I                 + L   ++    D +  ++++++ SPGG    
Sbjct: 63  NVAIIPVMGPIFPRASMFESISQAAVSVETLARDLQAALDDPAVASIVLNIDSPGGQVSG 122

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  +    + KPV+  +    ASA Y I+ A++ I A   ++VGSIG++   P   
Sbjct: 123 IHEFASQVFYAGSVKPVVAYIQGTGASAAYWIASATSRIFADAAAVVGSIGIVATIPKND 182

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                      ++     +A          +    +   +D  +  FV  V+  R    +
Sbjct: 183 GK---------TLSIVSSRAPKKRVDPETEEGRAEVVRTLDDLHAVFVGDVAAFRGFTRE 233

Query: 203 KTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           +       G +  GA A   G+ D +G  E V   L
Sbjct: 234 EVEQNFGQGGVLVGARAVAAGMADALGSLEGVIAEL 269


>gi|261210784|ref|ZP_05925076.1| SohB protein peptidase U7 family [Vibrio sp. RC341]
 gi|260840269|gb|EEX66849.1| SohB protein peptidase U7 family [Vibrio sp. RC341]
          Length = 255

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 106/260 (40%), Gaps = 16/260 (6%)

Query: 35  SPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
            PH+  +   G I        +E +  I  +++      +++ L + GG  +        
Sbjct: 6   EPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHGYGLASSQ 63

Query: 90  IQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
           + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P     L K 
Sbjct: 64  LDRIKEAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNFHKLLKKN 123

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
            +  + + +   K   + F E   KA    +  ++ ++  F   + + R  P      ++
Sbjct: 124 DIEFEQLTAGEYKRTLTMFGENTDKARDKFKLELEETHQLFKDFIRDHR--PALDLDKVA 181

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
            G  W G +A+ +GL+D +   +++  +            +  +   K     D      
Sbjct: 182 TGEHWFGTQAQTLGLVDEIRTSDDLIVAACK----NKTVLLLRYTQKKK--LADKLAGVA 235

Query: 269 SSLLEDTIPLMKQTKVQGLW 288
               ++ +  +     + L 
Sbjct: 236 GDAADNVLLKLISRGQRPLV 255


>gi|207856771|ref|YP_002243422.1| periplasmic protease [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|206708574|emb|CAR32895.1| putative protease [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 348

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 16/250 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSAY 81
                 + P V  I  +G ++  +  +  +                A++  L SPGG  +
Sbjct: 92  GDIATSDKPRVWVIDFKGSMDAHE--VNALREEVTAVLAVAKPGDRAVV-RLESPGGVVH 148

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   +Q+++++   +T    ++AAS GY+++C +  I+AA  ++VGSIGV+ Q P 
Sbjct: 149 GYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPN 208

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
              FL    + I+   +   K   +   E   +  Q  ++ ++ ++H F   V   R  P
Sbjct: 209 FNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMR--P 266

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +A + GL+D +   +EV   L       +      +   K    
Sbjct: 267 ALDIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLMEGREVLN----VRYMQRKKLID 322

Query: 261 CDLKNLSISS 270
               + + S+
Sbjct: 323 RVTGSAAESA 332


>gi|238756367|ref|ZP_04617679.1| Protein C serine peptidase MEROPS family S49 [Yersinia ruckeri ATCC
           29473]
 gi|238705428|gb|EEP97833.1| Protein C serine peptidase MEROPS family S49 [Yersinia ruckeri ATCC
           29473]
          Length = 280

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 91/220 (41%), Gaps = 14/220 (6%)

Query: 38  VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           +A I I+G              +     +     R   D +   + + + SPGG      
Sbjct: 62  IAIIPIQGTLVQKLGSLRPYSGMTGYDGIRACFLRALYDKTVKGICLDIDSPGGEVAGCF 121

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +   I   + +KP+   + E A SA Y ++ A++ IV   T  VGS+GV+  +      
Sbjct: 122 DLVDEIYASRGQKPIWAILSENAYSAAYALASAADRIVVPRTGGVGSVGVIVMHVDWSQR 181

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           +   G+ +  +     KAE +P++ ++ +A Q +Q  VD     FV  V+ +R I     
Sbjct: 182 IKADGLQVTIITYGDRKAESNPYTPLSEEAQQSIQSDVDEMGRLFVSTVARNRGIAEKII 241

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
                  +   A+  ++GL D V   +  +++L     ++
Sbjct: 242 RDTQAACLL-AADGVQLGLADEVAAPDTAFRALLNQVGEE 280


>gi|229577462|ref|YP_001172741.2| putative periplasmic protease [Pseudomonas stutzeri A1501]
          Length = 340

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 109/271 (40%), Gaps = 19/271 (7%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGS 79
           +  +   + S  V  +   G I  S       E+   +   +  D    +++ L S GG 
Sbjct: 80  AKQTKKSETSARVFVLDFDGDIRASAVENLRHEITALLTMATPQDE---VVLRLESGGGM 136

Query: 80  AYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +        + ++++    +T    ++AAS GY+++C  N I+ A  +++GSIGV+ Q 
Sbjct: 137 VHGYGLAASQLVRIRDAGVPLTVCVDKVAASGGYMMACIGNRILTAPFAILGSIGVVAQL 196

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P V   L K  V  + + +   K   + F E   K  +  Q+ +++++  F   V+  R 
Sbjct: 197 PNVHRLLKKHDVDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLETTHELFKNFVARYRQ 256

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
                   ++ G +W G  A    L D +   ++             +  I+  + P+ +
Sbjct: 257 NL--SIDDVATGEVWLGIAALGKHLADELKTSDQYLAERAQEAELFQLHYIQKKSLPERF 314

Query: 259 WFCDLKNLSISSLLE-DTIPLMKQTKVQGLW 288
                  ++ S+++E   +    +   Q  W
Sbjct: 315 ------GMAASTIMEHGLLKGWSRLNEQRFW 339


>gi|330815838|ref|YP_004359543.1| peptidase S49 [Burkholderia gladioli BSR3]
 gi|327368231|gb|AEA59587.1| peptidase S49 [Burkholderia gladioli BSR3]
          Length = 353

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 100/233 (42%), Gaps = 16/233 (6%)

Query: 21  TVVYFSWSSHVEDNSPHVARIAIRGQI---------------EDSQELIERIERISRDDS 65
             V    ++   +   ++A +   G +                  ++ + +   +  D S
Sbjct: 49  AAVAARRANTGRNVGGNIAVLCFYGSVLQRKSPADDVSGSGFMSLEQFMSQFRAMMADSS 108

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
            + +++ + SPGG  Y        I+  + +KPV    + +AASA Y I+ +++      
Sbjct: 109 VSGILIDIDSPGGGVYGVPEAAAEIRAARGKKPVYAVANSVAASAAYWITSSASEFYVTS 168

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
           +  +GSIGV   +  +   L+K G+    V +   K E +PF  ++ +A   MQ  +D+ 
Sbjct: 169 SGELGSIGVYASHQDLSAALEKEGIKTTLVSAGKYKTERNPFGPLSKEAEAAMQSRIDAC 228

Query: 186 YHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           Y  FVR V+ SRN+        +  GR+   ++A    + D V   +EV   L
Sbjct: 229 YRTFVRDVARSRNVDAAYVNARMGQGRLVGASDAVAAKMADGVMTFDEVLAKL 281


>gi|117620350|ref|YP_857606.1| putative periplasmic protease [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561757|gb|ABK38705.1| peptidase, S49 (protease IV) family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 335

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 108/257 (42%), Gaps = 14/257 (5%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA----TALIVSLSSPGGSAYAGEA 85
             ED    +  I   G   D++E+    E +S           +++ L S GG  +    
Sbjct: 83  KSEDARSRLFVIDFHGS-MDAKEVASLREEVSAVIGVAQPGDEVLLRLESGGGVVHGYGL 141

Query: 86  IFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
               +Q+++     +   + ++AAS GY+++C ++ I+AA  ++VGSIGV+ Q P     
Sbjct: 142 AASQLQRLRDRDIKLTVAIDKVAASGGYMMACVADQILAAPFAIVGSIGVIAQLPNFNKL 201

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K  +  +   +   K   + F E + +  +  ++ + + +  F   V+E R  P    
Sbjct: 202 LKKHDIEFEMHTAGQYKRTITMFGENDEQGREKFREELGAIHERFKAFVAEHR--PNLDI 259

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             ++ G  W  ++AK++GL+D +   ++    L A      +  I+   P          
Sbjct: 260 DSVTTGEHWLASQAKQLGLVDSLCTSDD---YLLAQASQHKVVGIRYSKPKS---LTQKL 313

Query: 265 NLSISSLLEDTIPLMKQ 281
               +  LE  +  + Q
Sbjct: 314 GQQAAVALESGLGRLWQ 330


>gi|327480845|gb|AEA84155.1| putative periplasmic protease [Pseudomonas stutzeri DSM 4166]
          Length = 340

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 109/271 (40%), Gaps = 19/271 (7%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGS 79
           +  +   + S  V  +   G I  S       E+   +   +  D    +++ L S GG 
Sbjct: 80  AKQTKKSETSARVFVLDFDGDIRASAVENLRHEITALLTMATPQDE---VVLRLESGGGM 136

Query: 80  AYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +        + ++++    +T    ++AAS GY+++C  N I+ A  +++GSIGV+ Q 
Sbjct: 137 VHGYGLAASQLVRIRDAGVPLTVCVDKVAASGGYMMACIGNRILTAPFAILGSIGVVAQL 196

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P V   L K  V  + + +   K   + F E   K  +  Q+ +D+++  F   V+  R 
Sbjct: 197 PNVHRLLKKHDVDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLDTTHELFKNFVARYRQ 256

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
                   ++ G +W G  A    L D +   ++             +  I+  + P+ +
Sbjct: 257 NL--SIDDVATGEVWLGIAALGKHLADELKTSDQYLAERAQEAELFQLHYIQKKSLPERF 314

Query: 259 WFCDLKNLSISSLLE-DTIPLMKQTKVQGLW 288
                  ++ S+++E   +    +   Q  W
Sbjct: 315 ------GMAASTIMEHGLLKGWSRLNEQRFW 339


>gi|238919608|ref|YP_002933123.1| periplasmic protease [Edwardsiella ictaluri 93-146]
 gi|238869177|gb|ACR68888.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 348

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 32  EDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGEAIFR 88
               P V  +   G ++  +   L E I   ++      ++++ L SPGG  +       
Sbjct: 96  AAEKPCVYVLDFTGSMDAREVGSLREEISAVLAVAGPQDSVLLRLESPGGVVHGYGLAAS 155

Query: 89  AIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            +++++     +T  V ++AAS GY+++C ++ IVAA  +++GSIGV+ Q P    +L K
Sbjct: 156 QLKRLRQAGVRLTVAVDKVAASGGYMMACVADRIVAAPFAIIGSIGVVAQIPNFNRWLKK 215

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
             V ++   +   K   + F E      +     +D ++  F + V   R  P      +
Sbjct: 216 NDVDVELHTAGEFKRTLTLFGENTDVGREKFCQELDETHLLFKQFVQ--RQRPSLDVDSV 273

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
           + G  W G +A + GL+D +   +++  +         +R ++ 
Sbjct: 274 ATGEHWYGEQALEKGLVDALSTSDDLLIAEMEQADVIGVRYVRR 317


>gi|238898830|ref|YP_002924512.1| putative peptidase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466590|gb|ACQ68364.1| putative peptidase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 348

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 107/249 (42%), Gaps = 14/249 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
           S       P +  I   G I        +E +  I  +   +   ++ + L SPGG  + 
Sbjct: 92  SGQHHSQKPCIYVIDFNGSIDAHQVSSLREEVSAILSVMTKED--SVFLRLESPGGVVHG 149

Query: 83  GEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + + +      +  V ++AAS GY+++C  + I++A  +++GSIGV+ Q P  
Sbjct: 150 YGLAASQLARFRQAGVSLVVSVDKIAASGGYMMACVGDHILSAPFAIIGSIGVVAQIPNF 209

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
             FL K  + ++   +   K   + F E   +  +   + ++ ++  F + V E R  P 
Sbjct: 210 HRFLQKNNIDVELHTAGEFKRTLTVFGENTEQGREKFCEELNETHLLFKQFVQEKR--PQ 267

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                +S G  W G +AK+ GL+D +G  ++    L +   +  I ++  +   K+    
Sbjct: 268 IDINTVSTGEHWFGVQAKEKGLVDSIGTSDD---WLISKMENHQIIRV-SYQTHKSLIER 323

Query: 262 DLKNLSISS 270
              ++  S+
Sbjct: 324 LTGSMVKSA 332


>gi|213424433|ref|ZP_03357246.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 342

 Score = 83.5 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 16/250 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSAY 81
                 + P V  I  +G ++  +  +  +                A++  L SPGG  +
Sbjct: 86  GDIATSDKPRVWVIDFKGSMDAHE--VNALREEVTAVLAVAKPGDRAVV-RLESPGGVVH 142

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   +Q+++++   +T    ++AAS GY+++C +  I+AA  ++VGSIGV+ Q P 
Sbjct: 143 GYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPN 202

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
              FL    + I+   +   K   +   E   +  Q  ++ ++ ++H F   V   R  P
Sbjct: 203 FNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMR--P 260

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +A + GL+D +   +EV   L       +      +   K    
Sbjct: 261 ALDIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLMEGREVLN----VRYMQRKKLID 316

Query: 261 CDLKNLSISS 270
               + + S+
Sbjct: 317 RVTGSAAESA 326


>gi|200390711|ref|ZP_03217322.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|199603156|gb|EDZ01702.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 348

 Score = 83.5 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 102/250 (40%), Gaps = 16/250 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSAY 81
                 + P V  I  +G ++  +  +  +                A++  L SPGG  +
Sbjct: 92  GDIATSDKPRVWVIDFKGSMDAHE--VNALREEVTAVLAVAKPGDRAVV-RLESPGGVVH 148

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   +Q+++++   +T    ++AAS GY+++C +  I+AA  ++VGSIGV+ Q P 
Sbjct: 149 GYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPN 208

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
              FL    + I+   +   K   +   E   +  Q  ++ ++ +++ F   V   R  P
Sbjct: 209 FNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHYLFKEFVQRMR--P 266

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +A + GL+D +   +EV   L       +      +   K    
Sbjct: 267 ALDIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLMEGREVLN----VRYMQRKKLID 322

Query: 261 CDLKNLSISS 270
               + + S+
Sbjct: 323 RVTGSAAESA 332


>gi|157145601|ref|YP_001452920.1| putative periplasmic protease [Citrobacter koseri ATCC BAA-895]
 gi|157082806|gb|ABV12484.1| hypothetical protein CKO_01347 [Citrobacter koseri ATCC BAA-895]
          Length = 351

 Score = 83.5 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 111/267 (41%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYA 82
             +     P    +  +G ++  +  +  +       ++       ++V L SPGG  + 
Sbjct: 95  GENAATGKPRAWVLDFKGSMDAHE--VSALREEVTAVLAAFKPQDQVVVRLESPGGVVHG 152

Query: 83  GEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  +Q++++++  +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P  
Sbjct: 153 YGLAASQLQRLRDKQIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQIPNF 212

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
             FL    + I+   +   K   +   E   +  Q  ++ ++ ++H F   V + R  P 
Sbjct: 213 NRFLKGKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKHFVQQMR--PV 270

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +A + GL+D +   ++V   L          ++ +    +     
Sbjct: 271 LDIEQVATGEHWYGQQALEKGLVDEINTSDDVILRLM------DGYEVFNVRFMQRKKLM 324

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D    S +   +  +    Q   + L 
Sbjct: 325 DRFTGSAAESADRLLLRWWQRGQKPLM 351


>gi|262043004|ref|ZP_06016147.1| peptidase U7 family SohB protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039606|gb|EEW40734.1| peptidase U7 family SohB protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 360

 Score = 83.5 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/270 (20%), Positives = 112/270 (41%), Gaps = 21/270 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
            +   +  P    +  +G ++        +E+   +      D    +++ L SPGG  +
Sbjct: 104 GNAEPEGKPRAWVLDFKGSMDAHEVNSLREEITAVLAAAKARDQ---VVIRLESPGGVVH 160

Query: 82  AGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   +Q++++++  +T  V ++AAS GY+++C +N IV+A  +++GSIGV+ Q P 
Sbjct: 161 GYGLAASQLQRLRDKQIPLTVAVDKVAASGGYMMACVANKIVSAPFAILGSIGVVAQIPN 220

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           +  FL    + I+   +   K   +   E   +  +  ++ ++ ++H F   V   R  P
Sbjct: 221 LHRFLKNKDIDIELHTAGQYKRTLTMLGENTEEGRRKFREDLNETHHLFKDFV--HRMRP 278

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +A + GL+D V   +E+   L              +   K    
Sbjct: 279 GLDIEQVATGEHWYGVQALEKGLVDAVETSDELLLGLMESHEVIG----VRYQQRKKMLD 334

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
                    S  E    L+ +   +G  ++
Sbjct: 335 RF-----TGSAAESADRLLLRWWQRGQKSL 359


>gi|303250487|ref|ZP_07336684.1| putative periplasmic protease [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650475|gb|EFL80634.1| putative periplasmic protease [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 326

 Score = 83.5 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 6/198 (3%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAAS 109
           +E+   I   +++D    +++ L SPGG  +        +Q+++     +T  V ++AAS
Sbjct: 124 REIDAVISLANKEDE---VLLRLESPGGVVHGYGLAASQLQRLRTHNIPLTVAVDKVAAS 180

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
            GY+++C +N IVAA  +++GS+GV+ Q P +   L K  + +  + +   K   +   E
Sbjct: 181 GGYMMACVANKIVAAPFAIIGSVGVVAQVPNIHRLLKKHEIDVDVMTAGEYKRTVTLVGE 240

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
              K  Q  Q  ++ ++  F + V+++R  P      ++ G  W G +A  + L+D +  
Sbjct: 241 NTEKGKQKFQQELEETHQLFKQFVAQNR--PQLDIEKIATGEHWFGKQALALDLVDEINT 298

Query: 230 QEEVWQSLYALGVDQSIR 247
            +++  +         ++
Sbjct: 299 SDDLLLNAIKEKEVIELK 316


>gi|260767896|ref|ZP_05876830.1| SohB protein peptidase U7 family [Vibrio furnissii CIP 102972]
 gi|260615926|gb|EEX41111.1| SohB protein peptidase U7 family [Vibrio furnissii CIP 102972]
 gi|315179599|gb|ADT86513.1| sohB protein, peptidase U7 family protein [Vibrio furnissii NCTC
           11218]
          Length = 353

 Score = 83.1 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 111/263 (42%), Gaps = 15/263 (5%)

Query: 27  WSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
                    PH+  +   G I        +E +  I  +++      +++ L + GG  +
Sbjct: 96  GGELDAKRDPHLFVLDFHGSIDAKEVTSLREEVTAILAVAQ--QGDEVLLRLETGGGMVH 153

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P 
Sbjct: 154 GYGLASSQLDRLKAAGLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPN 213

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E + KA +  ++ ++ ++  F   + E R  P
Sbjct: 214 FNKLLKKHDIEFEQLTAGEYKRTLTMFGENSDKAREKFKEELEETHVLFKDFIREHR--P 271

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +AK +GL+D +   +++           ++  +      K    
Sbjct: 272 DLDLEKVATGEHWFGTQAKALGLVDEIKTSDDLIVDACKNKTVLALHYV-----QKKKLT 326

Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283
             L  ++  +     + L+ + +
Sbjct: 327 AKLAGVAGEAADSVFLKLISRGQ 349


>gi|324113144|gb|EGC07119.1| peptidase S49 [Escherichia fergusonii B253]
          Length = 349

 Score = 83.1 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 110/267 (41%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYA 82
              +  + P V  +  +G ++  +  +  +       ++       ++V L SPGG  + 
Sbjct: 93  GETLSSDKPRVWVLDFKGSMDAHE--VTALREEITAVLAVYKPQDQVVVRLESPGGVVHG 150

Query: 83  GEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  +Q++++    +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P  
Sbjct: 151 YGLAASQLQRLRDHNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQLPNF 210

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
             FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P 
Sbjct: 211 NRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHLLFKDFVKRMR--PS 268

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +A + GL+D +   ++V           + R++ +    +     
Sbjct: 269 LDIDQVATGEHWYGQQALEKGLVDEINTSDDVI------LGLMNGREVVNVRYMQRKKLL 322

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D    S +   +  +    Q   + L 
Sbjct: 323 DRFTGSAAESADRLLLRWWQRGQKPLM 349


>gi|229358029|ref|YP_943339.2| putative periplasmic protease [Psychromonas ingrahamii 37]
          Length = 349

 Score = 83.1 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 111/267 (41%), Gaps = 18/267 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
           S   E     +  I  +G I+        +E+   +   +  D    + V L S GG  +
Sbjct: 92  SGLDEKGLAQLYVIDFKGSIDAKEVTSLREEITAILGVATEQDE---VFVRLESGGGMVH 148

Query: 82  AGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   +Q++++ K      V ++AAS GY+++C +N I+AA  +++GSIGV+ Q P 
Sbjct: 149 GYGLAASQLQRLRDHKIPLTISVDKVAASGGYMMACVANKIIAAPFAILGSIGVIAQIPN 208

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E +       +  ++ ++  F + VS+ R+  
Sbjct: 209 FNKVLKKHDIEFEQLTAGEYKRTLTMFGENDQAGRDKFKQELEETHDLFKQFVSQQRSQI 268

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +A +  L+D +   ++       L      R I      +   F
Sbjct: 269 --DIDKVATGEHWYGLQAIERNLVDQISTSDDY------LLTQLDSRHIIQIKYTQRKKF 320

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGL 287
            D    +    LE+++  + QT+   L
Sbjct: 321 ADKLGHAAVIALENSLLKIFQTQSNKL 347


>gi|289829092|ref|ZP_06546772.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 317

 Score = 83.1 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 12/219 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSAY 81
                 + P V  I  +G ++  +  +  +                A++  L SPGG  +
Sbjct: 92  GDIATSDKPRVWVIDFKGSMDAHE--VNALREEVTAVLAVAKPGDRAVV-RLESPGGVVH 148

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   +Q+++++   +T    ++AAS GY+++C +  I+AA  ++VGSIGV+ Q P 
Sbjct: 149 GYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPN 208

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
              FL    + I+   +   K   +   E   +  Q  ++ ++ ++H F   V   R  P
Sbjct: 209 FNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMR--P 266

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
                 ++ G  W G +A + GL+D +   +EV   L  
Sbjct: 267 ALDIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLME 305


>gi|220934776|ref|YP_002513675.1| putative periplasmic protease [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996086|gb|ACL72688.1| putative periplasmic protease [Thioalkalivibrio sp. HL-EbGR7]
          Length = 334

 Score = 83.1 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 97/256 (37%), Gaps = 17/256 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81
               ++N P V  +   G I  +      QE+   + +         ++  + S GG   
Sbjct: 84  EKARDENRPRVFVLRFHGDIRATHVDNLRQEVSAVLTQAR--PGQDRVVACIESGGGLVA 141

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPY 140
                   + +++     +T   +  A++G  +  A  N IVAA  ++VGSIGV+ Q P 
Sbjct: 142 PYGLGAAQLARLREAGVDLTVAVDRVAASGGYLMAAVANRIVAAPFAIVGSIGVVAQIPN 201

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           V   L +  V I+   +   K   +   E  P+  +  +  ++  +  F   +   R  P
Sbjct: 202 VNRLLKRHDVDIEMHTAGQFKRTLTVLGENTPEGREKFKQELEEIHALFKGYLKRYR--P 259

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 L+ G  W G +A  +GL+D +   +++      L        + + +  K    
Sbjct: 260 TLDLDKLATGEHWYGEQALPLGLVDELATSDDL------LMGLSKEADLYEVHYQKREPL 313

Query: 261 CDLKNLSISSLLEDTI 276
                L++   +E  +
Sbjct: 314 ARRITLAVEGAIERAL 329


>gi|288935905|ref|YP_003439964.1| peptidase S49 domain protein [Klebsiella variicola At-22]
 gi|288890614|gb|ADC58932.1| Peptidase S49 domain protein [Klebsiella variicola At-22]
          Length = 363

 Score = 83.1 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 107/250 (42%), Gaps = 16/250 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
            +   +  P    +  +G ++        +E+   +      D    +++ L SPGG  +
Sbjct: 107 GNVEPEGKPRAWVLDFKGSMDAHEVNSLREEITAVLAAAKARDQ---VVIRLESPGGVVH 163

Query: 82  AGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   +Q++++++  +T  V ++AAS GY+++C +N IV+A  +++GSIGV+ Q P 
Sbjct: 164 GYGLAASQLQRLRDKQIPLTVAVDKVAASGGYMMACVANKIVSAPFAILGSIGVVAQIPN 223

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           +  FL    + I+   +   K   +   E   +  +  ++ ++ ++H F   V   R  P
Sbjct: 224 LHRFLKNKDIDIELHTAGQYKRTLTMLGENTEEGRRKFREDLNETHHLFKDFV--HRMRP 281

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +A + GL+D V   +E+   L              +   K    
Sbjct: 282 GLDIEQVATGEHWYGVQALEKGLVDAVETSDELLLGLMESHEVIG----VRYQQRKKMLD 337

Query: 261 CDLKNLSISS 270
               + + S+
Sbjct: 338 RFTGSAAESA 347


>gi|167761710|ref|ZP_02433837.1| hypothetical protein BACSTE_00044 [Bacteroides stercoris ATCC
           43183]
 gi|167700436|gb|EDS17015.1| hypothetical protein BACSTE_00044 [Bacteroides stercoris ATCC
           43183]
          Length = 305

 Score = 83.1 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 12/224 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIE--------DSQELIERIERISRDDSATALIVSLSSPGGSA 80
           S  +      A I + G +          + E    I   +   + ++++  + S GG+ 
Sbjct: 68  SFSDAPQGSTAIIPVHGTMLKYGTYCSYGTTEYAALIRDAADSANISSVLCDIDSGGGAV 127

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET--SLVGSIGVLFQY 138
            A   +  AI   K++   +    ++ ASA Y  +   + I+A+ T  +  GSIGV+  +
Sbjct: 128 DAIAPLVDAILYAKSKGKAVVAHCDLCASAAYYAASYCDEIIASNTISAEFGSIGVMMSF 187

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV-DSSYHWFVRLVSESR 197
           P    + +  GV + ++ S+    + +PF          ++D   D     F   V ++R
Sbjct: 188 PDYAKYYENAGVKVHTIYSNLSDYKNAPFEAAKKGDYASIRDEELDPLARDFQANVRKNR 247

Query: 198 N-IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                 +T  L  GR++   +A KVGLID +G Q+   +    +
Sbjct: 248 GECLKQETEGLLRGRMFYAEDALKVGLIDSIGNQDYAVRRSREI 291


>gi|119864263|gb|ABM03740.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Psychromonas
           ingrahamii 37]
          Length = 360

 Score = 83.1 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 111/267 (41%), Gaps = 18/267 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
           S   E     +  I  +G I+        +E+   +   +  D    + V L S GG  +
Sbjct: 103 SGLDEKGLAQLYVIDFKGSIDAKEVTSLREEITAILGVATEQDE---VFVRLESGGGMVH 159

Query: 82  AGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   +Q++++ K      V ++AAS GY+++C +N I+AA  +++GSIGV+ Q P 
Sbjct: 160 GYGLAASQLQRLRDHKIPLTISVDKVAASGGYMMACVANKIIAAPFAILGSIGVIAQIPN 219

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E +       +  ++ ++  F + VS+ R+  
Sbjct: 220 FNKVLKKHDIEFEQLTAGEYKRTLTMFGENDQAGRDKFKQELEETHDLFKQFVSQQRSQI 279

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +A +  L+D +   ++       L      R I      +   F
Sbjct: 280 --DIDKVATGEHWYGLQAIERNLVDQISTSDDY------LLTQLDSRHIIQIKYTQRKKF 331

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGL 287
            D    +    LE+++  + QT+   L
Sbjct: 332 ADKLGHAAVIALENSLLKIFQTQSNKL 358


>gi|42523650|ref|NP_969030.1| putative periplasmic protease [Bdellovibrio bacteriovorus HD100]
 gi|39575857|emb|CAE80023.1| SohB protein, peptidase U7 family [Bdellovibrio bacteriovorus
           HD100]
          Length = 339

 Score = 83.1 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 108/269 (40%), Gaps = 15/269 (5%)

Query: 26  SWSSHVEDNSPHVARIAIRG-----QIEDSQELIERIERISRDDSATALIVSLSSPGGSA 80
           +  S   +    +  I   G      +E+ +E +  I  ++    +  ++V + SPGG  
Sbjct: 80  ALDSKSSNGDKKIFVIDFDGDVKASAVENLREEVTAILTLAT--PSDEVVVRVESPGGVV 137

Query: 81  YAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +        + +++ +   +T    ++AAS GYL+S  +N I+ A  ++VGSIGV+ Q P
Sbjct: 138 HGYGLAASQLLRIREKGIPLTVCVDKVAASGGYLMSVTANKILCAPFAIVGSIGVVAQLP 197

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            +   L K  V  K   +   K   S   E+  K  +  +  ++ ++  F   VS  R  
Sbjct: 198 NLHRLLKKHDVDYKEYTAGEFKRTVSLLGEITDKGEEKFKQQLEDTHTLFKSFVSRFR-- 255

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           P      ++ G  W G +A    L+D +   ++   +L        ++            
Sbjct: 256 PQLNLAEVATGEYWYGEQALTKLLVDEIRTSDDYLLTLSEKHQVVKVKF-----EHHESL 310

Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
              L  +   +L +  +  +++ + +   
Sbjct: 311 SDKLTGVLGKALKKGALSAVEELETRRFL 339


>gi|229590082|ref|YP_002872201.1| putative periplasmic protease [Pseudomonas fluorescens SBW25]
 gi|229361948|emb|CAY48848.1| putative peptidase [Pseudomonas fluorescens SBW25]
          Length = 341

 Score = 83.1 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 103/248 (41%), Gaps = 12/248 (4%)

Query: 33  DNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAGEAIFRA 89
           D  P V  +   G I+ S  + L   I  +    +    +++ L S GG  ++       
Sbjct: 89  DAKPRVFVLDFDGDIKASATESLRHEITALLSLATPKDEVVLRLESGGGMVHSYGLASSQ 148

Query: 90  IQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
           + +++     +T    ++AAS GY+++C    I++A  +++GSIGV+ Q P V   L K 
Sbjct: 149 LARIRQAGVPLTVCIDKVAASGGYMMACIGEKIISAPFAILGSIGVVAQLPNVNRLLKKH 208

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
            +  + + +   K   + F E   K  +  Q+ +D ++  F   VS  R  P      ++
Sbjct: 209 DIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLDITHQLFKNFVSRYR--PQLAIDDVA 266

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
            G +W G  A    L+D +   +E   +           ++   +  +     +   L+ 
Sbjct: 267 TGEVWLGVAALDKQLVDELQTSDEYLATKAKTA------EVFHLHYAERKSLQERVGLAA 320

Query: 269 SSLLEDTI 276
           S  ++  +
Sbjct: 321 SGSVDRVL 328


>gi|325497454|gb|EGC95313.1| periplasmic protease [Escherichia fergusonii ECD227]
          Length = 349

 Score = 83.1 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 111/267 (41%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYA 82
              +  + P V  +  +G ++  +  +  +       ++       ++V L SPGG  + 
Sbjct: 93  GETLSSDKPRVWVLDFKGSMDAHE--VTALREEITAVLAVYKPQDQVVVRLESPGGVVHG 150

Query: 83  GEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  +Q++++    +T    ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P  
Sbjct: 151 YGLAASQLQRLRDHNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQLPNF 210

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
             FL    + I+   +   K   +   E   +  +  ++ ++ ++  F   V   R  P 
Sbjct: 211 NRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHLLFKDFVKRMR--PS 268

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +A + GL+D +   ++V           + R++ +    +     
Sbjct: 269 LDIDQVATGEHWYGQQALEKGLVDEINTSDDVI------LGLMNGREVVNVRYMQRKKLL 322

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D    S++   +  +    Q   + L 
Sbjct: 323 DRFTGSVAESADRLLLRWWQRGQKPLM 349


>gi|238786162|ref|ZP_04630114.1| Protease 4 [Yersinia bercovieri ATCC 43970]
 gi|238712931|gb|EEQ04991.1| Protease 4 [Yersinia bercovieri ATCC 43970]
          Length = 294

 Score = 83.1 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 99/286 (34%), Gaps = 38/286 (13%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           M FV + I   +++L ++    VY  + +   +       + + G + D           
Sbjct: 1   MNFVREFILNLFLILLILIGVGVYLQFQTKPVEPVKGALLVNLSGVVVDQPAVNNKLRQW 60

Query: 52  ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92
                             +++E I     D++   +++SLS   G+     + I +A+++
Sbjct: 61  GRELLGASSNRLQENSLFDVVETIRLAKTDNNINGIVLSLSDFTGADQPSLQYIGKALRE 120

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            ++    I  + +      Y ++  +N I  +    V   G      Y K  L+KL V+ 
Sbjct: 121 FRDSGKPIYAIGDSYNQNQYYLASFANKIYLSPQGAVDLHGFASNNLYYKSLLEKLKVTT 180

Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203
              +    K+   P    +++P A +     +   +  ++  V+ +R +  ++       
Sbjct: 181 NIFRVGTFKSAVEPMIRDDMSPAAREADSRWIGGLWQNYLTAVAANRQLTAEQLFPGAAA 240

Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
               L          A    L+D +  + EV   L         R+
Sbjct: 241 VISGLQAAGGSAAKYALDNKLVDQLASRPEVESELIKTFGWDKKRQ 286


>gi|18313592|ref|NP_560259.1| protease IV, conjectural [Pyrobaculum aerophilum str. IM2]
 gi|18161137|gb|AAL64441.1| protease IV, conjectural [Pyrobaculum aerophilum str. IM2]
          Length = 548

 Score = 83.1 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 103/251 (41%), Gaps = 22/251 (8%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSS------HVEDNSPHVARIAIRGQIEDS--QELIERI 57
           K +     +   +++  ++   ++        +   P +  + I   +E     +LI  +
Sbjct: 4   KFVTFGVALALAISVAAIFLVLTTYKPSPPPPQPAKPKIVLVPIDFVLESPAVDKLISAL 63

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117
             +++      +++ ++SPGG+  A EA++  +  +   K  +   + +AAS  Y ++ A
Sbjct: 64  IAVAQRGDVAGIVLLINSPGGTVSATEALYTTVAGINKTKYAVV--NGLAASGAYYVAVA 121

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           +  I A  +S VGSIGV+      + F D   +      + P+K             +  
Sbjct: 122 TERIYATPSSWVGSIGVIAVMWPEEYFYD---IPDYIYTTGPLKYYGR--------ELTD 170

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLS-DGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
             + ++     FV+ V + R      +  +     I+T  +AK++GL+D +GG  +  + 
Sbjct: 171 YYNDIERVRLNFVQAVLKGRAGRIKASPDVFETASIFTADQAKELGLVDEIGGIFDAVRD 230

Query: 237 LYALGVDQSIR 247
           +      +   
Sbjct: 231 MAQRLGLREYE 241


>gi|90415994|ref|ZP_01223927.1| probable protease [marine gamma proteobacterium HTCC2207]
 gi|90332368|gb|EAS47565.1| probable protease [marine gamma proteobacterium HTCC2207]
          Length = 363

 Score = 83.1 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 103/237 (43%), Gaps = 15/237 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSA 80
             + +    P V  +   G +  S      +E+   + + S +D    ++V L S GG  
Sbjct: 103 PEAELPAQKPRVFVVNFYGNVSASAVTNLREEVTAILSQASANDE---VVVRLESGGGMV 159

Query: 81  YAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           ++       + +++ R   +T    ++AAS GY+++C ++ I+AA  +++GSIGV+ Q P
Sbjct: 160 HSYGLASSQLDRIRKRNIPLTVCVDKVAASGGYMMACVADKIIAAPFAILGSIGVVAQLP 219

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                L K  V  + + +   K   + F E      +   + ++ ++  F   V E R  
Sbjct: 220 NFNKVLKKHDVEFELLTAGEHKRTLTMFGENTDSGREKFLEELEDTHSLFKEFVQERR-- 277

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
           P     +++ G +W G  A  V L+D +   +E    L A   +  + +I      K
Sbjct: 278 PQLDIDLIATGEVWFGTRALNVALVDDLQTSDE---YLVARAQEADVYEIAFVLKKK 331


>gi|238763116|ref|ZP_04624082.1| protease sohB [Yersinia kristensenii ATCC 33638]
 gi|238698615|gb|EEP91366.1| protease sohB [Yersinia kristensenii ATCC 33638]
          Length = 230

 Score = 83.1 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 108/239 (45%), Gaps = 12/239 (5%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAAS 109
           +E+   +   +  D    +++ L SPGG  +        +++++++   +T  V ++AAS
Sbjct: 3   EEISAVLAVATAQDE---VLLRLESPGGVVHGYGLAASQLERLRHKGIRLTVAVDKVAAS 59

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
            GY+++C ++ I++A  +++GSIGV+ Q P     L K  + ++   +   K   + F E
Sbjct: 60  GGYMMACVADRIISAPFAIIGSIGVVAQIPNFHRLLKKNDIDVELHTAGEFKRTLTLFGE 119

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
              +  +  ++ ++ ++  F + V + R  P      ++ G  W G +AK+ GL+D +G 
Sbjct: 120 NTEQGREKFREDLNETHLLFKQFVQQQR--PSLDIDAVATGEHWFGTQAKEKGLVDAIGT 177

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
            ++    +  +       ++      +     D    S++   +  +    Q   + L 
Sbjct: 178 SDDFL--IAEM----DNHEVIGVRYSRRKRLMDRFTGSVAESADRLLLRWWQRGEKPLL 230


>gi|213967047|ref|ZP_03395197.1| peptidase, U7 family [Pseudomonas syringae pv. tomato T1]
 gi|301385232|ref|ZP_07233650.1| putative periplasmic protease [Pseudomonas syringae pv. tomato
           Max13]
 gi|302130173|ref|ZP_07256163.1| putative periplasmic protease [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213928369|gb|EEB61914.1| peptidase, U7 family [Pseudomonas syringae pv. tomato T1]
          Length = 340

 Score = 83.1 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 102/262 (38%), Gaps = 15/262 (5%)

Query: 33  DNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           +    V  +   G I+ S     +  I  +  ++ D     +++ L S GG  ++     
Sbjct: 88  EPKARVYVLDFDGDIKASATESMRHEITALLTLATDKD--EVVLRLESGGGMVHSYGLAS 145

Query: 88  RAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
             + +++     +T    ++AAS GY+++C  N I++A  +++GSIGV+ Q P V   L 
Sbjct: 146 SQLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQLPNVNRLLK 205

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           K  +  + + +   K   + F E   K  +  Q  +D ++  F   V+  R  P      
Sbjct: 206 KHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASYR--PQLSIDE 263

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           ++ G +W G  A    L+D +   +E             +  +      +      +   
Sbjct: 264 VATGEVWLGMAAVDKLLVDELKTSDEYLAERARQADVFHLHYV-----QRKSLQERMGMA 318

Query: 267 SISSLLEDTIPLMKQTKVQGLW 288
           + +S  +       +   Q  W
Sbjct: 319 AANSADQLATKWWGRLTQQRFW 340


>gi|222825064|dbj|BAH22222.1| putative minor capsid protein c [Wolbachia endosymbiont of Cadra
           cautella]
          Length = 358

 Score = 83.1 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 96/213 (45%), Gaps = 1/213 (0%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           +   +++ E+I +   D S   +I+ + SPGG       +   I + + +K +I   ++ 
Sbjct: 54  MTSYEQIEEQITQALADSSIETIILEIDSPGGEVNGIFDLADFIYESRGKKRIIAIANDD 113

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           A SA Y I+ ++  I    TS VGSIGV+  +     F +K G+   +V +   K + +P
Sbjct: 114 AYSAAYAIASSAEKIFLTRTSGVGSIGVIASHIDQSGFDEKCGIKYTTVFAGSRKNDLNP 173

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
              +  ++++ ++  V+  Y   V L++ +RN+  +       G  + G +A ++GL D 
Sbjct: 174 HEPITSESLENLKSEVNRLYEMLVELIARNRNLSVEAIKSTEAGLYF-GEKAVEIGLADG 232

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           +    E         +  + + I D     N  
Sbjct: 233 ITILSEFKYINKNRSITMNEQTITDLKEETNNL 265


>gi|262402596|ref|ZP_06079157.1| SohB protein peptidase U7 family [Vibrio sp. RC586]
 gi|262351378|gb|EEZ00511.1| SohB protein peptidase U7 family [Vibrio sp. RC586]
          Length = 353

 Score = 83.1 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 106/267 (39%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
                   PH+  +   G I        +E +  I  +++      +++ L + GG  + 
Sbjct: 97  GELESKREPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 154

Query: 83  GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P  
Sbjct: 155 YGLASSQLDRIKEAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 214

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  +  + + +   K   + F E   KA    +  ++ ++  F   + + R  P 
Sbjct: 215 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKARDKFKLELEETHQLFKDFIRDHR--PA 272

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +AK +GL+D +   +++  +          + +      +     
Sbjct: 273 LDLDKVATGEHWFGTQAKTLGLVDEIRTSDDLIVAACK------NKTVLLLRYVQKKKLT 326

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D          ++ +  +     + L 
Sbjct: 327 DKLAGVAGDAADNVLLKLISRGQRPLV 353


>gi|290475296|ref|YP_003468184.1| putative peptidase [Xenorhabdus bovienii SS-2004]
 gi|289174617|emb|CBJ81411.1| putative peptidase [Xenorhabdus bovienii SS-2004]
          Length = 348

 Score = 82.7 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 101/242 (41%), Gaps = 12/242 (4%)

Query: 29  SHVEDNSPHVARIAIRGQIE--DSQELIERIER--ISRDDSATALIVSLSSPGGSAYAGE 84
           S       ++  +  +G ++  +   L E I       D     +++ L SPGG  +   
Sbjct: 93  SQKVLQKSNLYVLDFKGSMDAHEVDSLREEISAILAVADSK-DEVLLRLESPGGMVHGYG 151

Query: 85  AIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                + +++ +       V ++AAS GY+++C ++ I+AA  +++GSIGV+ Q P +  
Sbjct: 152 LAASQLARLRQKGIRLTIAVDKVAASGGYMMACVADRIIAAPFAIIGSIGVVAQLPNIHR 211

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K  + ++   +   K   +   E   +  Q  Q+ ++ ++  F   + + R  P   
Sbjct: 212 LLKKNDIDVELHTAGEYKRTLTVLGENTEQGRQKFQEDLNETHQLFKSFIYQHR--PSLD 269

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +AK+ GLID VG  ++                   ++  K      +
Sbjct: 270 VEKVATGEYWYGTQAKENGLIDDVGVSDDFLIEQIEHCEVIG----VSYSRRKRVIERFM 325

Query: 264 KN 265
            +
Sbjct: 326 GS 327


>gi|213027718|ref|ZP_03342165.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 254

 Score = 82.7 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 12/219 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSAY 81
                 + P V  I  +G ++  +  +  +                A++  L SPGG  +
Sbjct: 34  GDIATSDKPRVWVIDFKGSMDAHE--VNALREEVTAVLAVAKPGDRAVV-RLESPGGVVH 90

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   +Q+++++   +T    ++AAS GY+++C +  I+AA  ++VGSIGV+ Q P 
Sbjct: 91  GYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPN 150

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
              FL    + I+   +   K   +   E   +  Q  ++ ++ ++H F   V   R  P
Sbjct: 151 FNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMR--P 208

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
                 ++ G  W G +A + GL+D +   +EV   L  
Sbjct: 209 ALDIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLME 247


>gi|46804778|dbj|BAD16787.1| similar to minor capsid protein GPC of phage lambda [Wolbachia
           phage WOcauB1]
          Length = 350

 Score = 82.7 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 96/213 (45%), Gaps = 1/213 (0%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           +   +++ E+I +   D S   +I+ + SPGG       +   I + + +K +I   ++ 
Sbjct: 64  MTSYEQIEEQITQALADSSIETIILEIDSPGGEVNGIFDLADFIYESRGKKRIIAIANDD 123

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           A SA Y I+ ++  I    TS VGSIGV+  +     F +K G+   +V +   K + +P
Sbjct: 124 AYSAAYAIASSAEKIFLTRTSGVGSIGVIASHIDQSGFDEKCGIKYTTVFAGSRKNDLNP 183

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
              +  ++++ ++  V+  Y   V L++ +RN+  +       G  + G +A ++GL D 
Sbjct: 184 HEPITSESLENLKSEVNRLYEMLVELIARNRNLSVEAIKSTEAGLYF-GEKAVEIGLADG 242

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           +    E         +  + + I D     N  
Sbjct: 243 ITILSEFKYINKNRSITMNEQTITDLKEETNNL 275


>gi|284988655|ref|YP_003407209.1| peptidase S49 [Geodermatophilus obscurus DSM 43160]
 gi|284061900|gb|ADB72838.1| peptidase S49 [Geodermatophilus obscurus DSM 43160]
          Length = 417

 Score = 82.7 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 112/313 (35%), Gaps = 43/313 (13%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH-------------VARIAIRGQIEDS 50
           V+  +    + + +V   V   +         P              +A   + G I  S
Sbjct: 75  VVLAVVALGLTVVMVLALVGLTAGGDTAPSGPPTETVWGAADAPARLIAV-PVTGVILGS 133

Query: 51  Q-------------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR- 96
           +             ++ + I+     + A  LI+ L++PGG+ +   AI  A+++ + R 
Sbjct: 134 ESDGVTFGGATYGYDVADTID-ALETEDADGLILELNTPGGTIHGSRAIADAVERYQKRT 192

Query: 97  -KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL------- 148
              V+  V  M+AS G      ++ IVA   SLVGSIGV+         +  +       
Sbjct: 193 GNQVLAHVQGMSASGGMYAMAGADQIVADHGSLVGSIGVIMGPFQRFRDVTGIPGSLLEP 252

Query: 149 ------GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                 GV+ + +     K   +P+ ++  +   ++   +D  Y  FV  VS++R IP  
Sbjct: 253 GVTTDGGVTEEYLTRGRGKDFGNPYRDMTEEERAVLGRGLDREYEAFVSWVSQARGIPPQ 312

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
             +      ++    A   GL+D V G+EE ++    +          D           
Sbjct: 313 TIVDELGAFVFDSYTAVDRGLVDRVLGREEAYRHAAEINGADPDDTRVDRVVAPGLVESL 372

Query: 263 LKNLSISSLLEDT 275
           L        +   
Sbjct: 373 LAANGPLGGIGAA 385


>gi|329297657|ref|ZP_08254993.1| putative inner membrane peptidase [Plautia stali symbiont]
          Length = 348

 Score = 82.7 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 100/213 (46%), Gaps = 6/213 (2%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYA 82
           + +   E   P +  +  +G ++  +   L E I   ++       +++ L SPGG  + 
Sbjct: 90  AKAGVTEAAKPTLYVLEFKGSMDAGEVSSLREEISAVLAVAQPGDEVLLRLESPGGVVHG 149

Query: 83  GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  +Q++++    +   V ++AAS GY+++C ++ IVAA  S++GSIGV+ Q P  
Sbjct: 150 YGLAASQLQRLRDAGLQLTAVVDKVAASGGYMMACVADRIVAAPFSIIGSIGVVAQIPNF 209

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L +  + ++   +   K   + F E   +  +  Q+ ++ ++  F   V + R  P 
Sbjct: 210 NRLLKRNDIDVELHTAGQYKRTLTLFGENTEEGREKFQEDLNETHQLFKDFVHQMR--PA 267

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
                ++ G  W G +A  +GLID +G  + + 
Sbjct: 268 LDLDKVATGEHWYGRQALDLGLIDEIGTSDALI 300


>gi|256822003|ref|YP_003145966.1| putative periplasmic protease [Kangiella koreensis DSM 16069]
 gi|256795542|gb|ACV26198.1| Peptidase S49 domain protein [Kangiella koreensis DSM 16069]
          Length = 384

 Score = 82.7 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 99/216 (45%), Gaps = 12/216 (5%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYA 82
               D+   +  I   G I  S      +E+   +   ++ D    +++ L SPGG  ++
Sbjct: 127 EGSSDSPQRMYVIDFEGDIHASGVESLREEVTAILATANKSDQ---VMIRLESPGGLVHS 183

Query: 83  GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  ++++++    +   V E+AAS GY+++C ++ ++AA  +++GSIGV+ + P  
Sbjct: 184 YGLAASQLKRIRDAGLKLTISVDEVAASGGYMMACVADELIAAPFAILGSIGVVAEIPNF 243

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  +  +   +   K   + F +    + +  +  ++ ++  F   + E+R  P 
Sbjct: 244 NRLLQKANIDYEQHTAGQHKRTLTMFGQNTTASREKFKQELEETHQLFKAFIHENR--PA 301

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
                ++ G  W G +A ++GL+D +   ++V    
Sbjct: 302 LDLNKVATGEHWYGRQALELGLVDKLQTSDDVILDA 337


>gi|262368527|ref|ZP_06061856.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262316205|gb|EEY97243.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 320

 Score = 82.7 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 111/266 (41%), Gaps = 15/266 (5%)

Query: 28  SSHVEDNSPHVARIAIRG-----QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
           S H +  +  V  +  +G      +E  +E I  I   ++      ++V L SPGG  + 
Sbjct: 49  SRHRKKANQKVYILDFKGDTAATAVESLREEITLILATAKAGR-DRVVVRLESPGGMVHG 107

Query: 83  GEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + ++++    +T    ++AAS GY+++C +N I+AA  ++VGSIGV+ Q P  
Sbjct: 108 YGLAAAQLVRLRDAGFNLTICVDKVAASGGYMMACIANQIIAAPFAVVGSIGVVAQVPNF 167

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L +  +  +   +   K   + F E   +     ++ +  ++  F   V + R  P 
Sbjct: 168 NRLLKEHNIDFELYTAGQYKRTVTMFGENTAEGKAKFEEELQQTHVLFKHFVEKYR--PQ 225

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +A  + L+D +   +     L  L  D  +  I   +  K     
Sbjct: 226 LNVEKVATGEHWYGQDALDLNLVDQLQTSD---AYLLNLLTDHDVYVI---STRKKPTLG 279

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287
           +   L  + + +  +P +    ++ L
Sbjct: 280 EKLGLQAAQMADALVPAVMNKVIETL 305


>gi|126737104|ref|ZP_01752839.1| Periplasmic serine protease [Roseobacter sp. SK209-2-6]
 gi|126721689|gb|EBA18392.1| Periplasmic serine protease [Roseobacter sp. SK209-2-6]
          Length = 305

 Score = 82.7 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 22/228 (9%)

Query: 40  RIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
            + + G I                +   +   + + D  A A+++ + SPGG     +  
Sbjct: 66  LLRLHGTIMPRGGMMARMSGGASLEMFQKAFSQAASDAHAQAIVIEVDSPGGMVEQVQET 125

Query: 87  FRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
              I   +     I    + +AASA Y I+ A++ +V   +  VGSIGV   +  +   L
Sbjct: 126 ASMIYSARRSGRPIVAVANSLAASAAYWIASAADELVVTPSGRVGSIGVYTMHDNLAVAL 185

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           +K G+    + +   K E  PF ++ P+A    Q  VD++Y  F   V+E R +  +   
Sbjct: 186 EKAGIERSVISAGARKVESLPFGKLAPEARAATQAQVDATYERFTHDVAEFRGVASEVVR 245

Query: 206 V--------LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
                       GR +   EA ++G+ D V    E  Q L   G    
Sbjct: 246 ADPEEAEAHFGGGRAYHAQEAVRLGMADRVATLSETIQRLSTEGRVPK 293


>gi|161503176|ref|YP_001570288.1| putative periplasmic protease [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160864523|gb|ABX21146.1| hypothetical protein SARI_01244 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 363

 Score = 82.7 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 107/268 (39%), Gaps = 18/268 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSAY 81
                 + P V  I  +G ++  +  +  +                A++  L SPGG  +
Sbjct: 107 GDIATADKPRVWVIDFKGSMDAHE--VNALREEVTAVLAVAKPGDRAVV-RLESPGGVVH 163

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   +Q+++++   +T    ++AAS GY+++C +  IVAA  ++VGSIGV+ Q P 
Sbjct: 164 GYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVAEKIVAAPFAIVGSIGVVAQIPN 223

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
              FL    + I+   +   K   +   E   +  Q  ++ ++ ++H F   V   R  P
Sbjct: 224 FNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKDFVQRMR--P 281

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +A K GL+D +   +EV             R++ +    +    
Sbjct: 282 TLDIEQVATGEHWYGQQALKKGLVDEINTSDEVI------LGLMDGREVLNVRYMQRKKL 335

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288
            +    S +   +  +    Q   + L 
Sbjct: 336 IERVTGSAAESADRLLLRWWQRGQKPLM 363


>gi|320540529|ref|ZP_08040179.1| putative predicted inner membrane peptidase [Serratia symbiotica
           str. Tucson]
 gi|320029460|gb|EFW11489.1| putative predicted inner membrane peptidase [Serratia symbiotica
           str. Tucson]
          Length = 348

 Score = 82.7 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 113/256 (44%), Gaps = 18/256 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
           S  +E   P +  +  +G ++        +E+   +   S  D    +++ L SPGG  +
Sbjct: 92  SGTIEVTQPCLYVLDFKGSMDAHEVTSLREEISAVLAVASTQDE---VLLRLESPGGVVH 148

Query: 82  AGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   +++++     +T  V  +AAS GY+++C ++ IVAA  +++GSIGV+ Q P 
Sbjct: 149 GYGLAASQLERLRKGGIRLTVAVDNVAASGGYMMACVADRIVAAPFAVIGSIGVVAQIPN 208

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  + ++   +   K   + F E   +  +  +  ++ ++  F + V + R  P
Sbjct: 209 FHRLLKKNDIDVELYTAGQFKRTLTLFGENTEQGREKFRSDLNKTHELFKQFVHQQR--P 266

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 +S G  W G +AK+ GLID +G  +++      L  +    K+      +    
Sbjct: 267 SLDIGSVSTGEHWFGTQAKEKGLIDAIGTSDDL------LIAEVDSYKVISVRYTRRKRL 320

Query: 261 CDLKNLSISSLLEDTI 276
            D    S++  ++  +
Sbjct: 321 VDRFTASVAESVDRLL 336


>gi|157161458|ref|YP_001458776.1| S49 family peptidase [Escherichia coli HS]
 gi|157067138|gb|ABV06393.1| putative peptidase, S49 (protease IV) family [Escherichia coli HS]
          Length = 288

 Score = 82.4 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 88/218 (40%), Gaps = 14/218 (6%)

Query: 38  VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           VA I I G              +     + +       D   T + + + SPGG      
Sbjct: 71  VAVIPICGTLVQKLGSLRPYSGMTGYDGIRQAFLTAMEDPDITGICLDIDSPGGEVAGCF 130

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +   I   + +KP+   + E A SA Y I+ A++ I    T+ VGS+GV+  +      
Sbjct: 131 DLVDVIYGARGKKPIHAILTESAYSAAYAIASAADRISVPRTAGVGSVGVITMHLDWTQR 190

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           +   G+ +  +     KAE +P  E++ +A+  +Q  +++    FV  V+ +R I     
Sbjct: 191 IKDDGLKVTIITYGSRKAEGAPLRELSDEALAAIQQDINTMGELFVNTVARNRGISAKVI 250

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
                   +  A+  ++GL D V   +  +++L     
Sbjct: 251 KSTQAAC-FMAADGVELGLADEVCPPDAAFRNLLEKTG 287


>gi|297626322|ref|YP_003688085.1| SppA, Periplasmic serine proteases [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922087|emb|CBL56655.1| SppA, Periplasmic serine proteases [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 418

 Score = 82.4 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 98/282 (34%), Gaps = 30/282 (10%)

Query: 31  VEDNSPHVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSP 76
                  +  I++ G I                  ++ + I+ ++ D SA  L++ + +P
Sbjct: 113 SSSAKNTLRAISVSGTIQASGGSSSGMFSSATYGYDVAKLIDSLTAD-SAAGLVLLMDTP 171

Query: 77  GGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GGS     AI  A+ + + R  K     V  M+AS G       N I A + ++VGSIGV
Sbjct: 172 GGSINGSRAIADAVDRYEQRTGKKSFAFVEGMSASGGMYAMAGVNRIYADQGTMVGSIGV 231

Query: 135 LFQYPYVKPFLDKLG-------------VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
           +         +  +              +    +     K   + F ++  K   +    
Sbjct: 232 IMGPFARYRDVTAVDGGLLGNGVTASGGIDQFYLTQGEAKDFGNAFRDMTQKERDVYTAG 291

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           +   Y  FV  VS SR I  +         ++    AK   L+D V G+EE ++ +    
Sbjct: 292 LSREYDAFVNWVSTSRGIAPETIRNDLGAYMFDAQTAKDKHLVDDVLGREEAFRQIARDA 351

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
                +     +    +    + +   +    + +   +  K
Sbjct: 352 GVDPDQTKLVTDAEPGFLSSLMGSRKQAFGHGEALQAGEGVK 393


>gi|91782184|ref|YP_557390.1| serine peptidase [Burkholderia xenovorans LB400]
 gi|91686138|gb|ABE29338.1| protein C, Serine peptidase, MEROPS family S49 [Burkholderia
           xenovorans LB400]
          Length = 323

 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 91/218 (41%), Gaps = 19/218 (8%)

Query: 38  VARIAIRGQ------------------IEDSQELIERIERISRDDSATALIVSLSSPGGS 79
           +A I ++G                   +     +   +     D +  A+++ + SPGG 
Sbjct: 63  IAVIQVQGMLLSRTGAAGPCLMTGADFVTGYDGIRANVSAALADPAVRAIVLDIDSPGGE 122

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
                 +  AI   + RKP++   +E A SA Y ++ A   +    T   G +GVL  + 
Sbjct: 123 IAGLLDLADAIYAARRRKPLLAVCNECAFSAAYCLASACEQVTVPRTGGTGGVGVLVVHV 182

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                L   G+++  + S   KA+ + +  ++  A + ++  VD++    + +V+ +R +
Sbjct: 183 DFSKALTDAGIAVTLITSGEHKADGNEYRPLSRDAYRRIKADVDATAKMLIAMVAHNRGL 242

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
              +    ++G  + GA   + GL D V   +E   SL
Sbjct: 243 SQAQVRD-TEGATYLGAAGVRAGLADAVMSPDEALLSL 279


>gi|317048300|ref|YP_004115948.1| peptidase S49 domain-containing protein [Pantoea sp. At-9b]
 gi|316949917|gb|ADU69392.1| Peptidase S49 domain protein [Pantoea sp. At-9b]
          Length = 348

 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 112/268 (41%), Gaps = 14/268 (5%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER--ISRDDSATALIVSLSSPGGSAY 81
           + S   E   P +  +  +G ++  +   L E I             +++ L SPGG  +
Sbjct: 90  AKSGVTETEKPTLYVLEFKGSMDAGEVSSLREEISAVLAVATPG-DEVLLKLESPGGVVH 148

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   +Q++++    +   V ++AAS GY+++C ++ IVAA  S++GSIGV+ Q P 
Sbjct: 149 GYGLAASQLQRLRDAGLTLTAAVDKVAASGGYMMACVADRIVAAPFSIIGSIGVVAQIPN 208

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L +  + ++   +   K   + F E   +  +  ++ ++ ++  F   V + R  P
Sbjct: 209 FNRLLKRNDIDVELHTAGQYKRTLTLFGENTDEGREKFREDLNETHLLFKDFVHQMR--P 266

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +A ++GL+D +G  + +  S         +      +  +    
Sbjct: 267 TLDVEKVATGEHWYGRQALELGLVDEIGTSDALIISQMERFTVLGV------HYARKRKM 320

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288
            D    S S   E  I  M Q   + L 
Sbjct: 321 IDRMTHSASLAAERLILKMWQRGNKPLL 348


>gi|194444766|ref|YP_002040970.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194403429|gb|ACF63651.1| putative signal peptide peptidase SppA, 36K type [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 348

 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 16/250 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSAY 81
                 + P V  I  +G ++  +  +  +                A++  L SPGG  +
Sbjct: 92  GDIATSDKPRVWVIDFKGSMDAHE--VNALREEVTAVLAVVKPGDRAVV-RLESPGGVVH 148

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   +Q+++++   +T    ++AAS GY+++C +  I+AA  ++VGSIGV+ Q P 
Sbjct: 149 GYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPN 208

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
              FL    + I+   +   K   +   E   +  Q  ++ ++ ++H F   V   R  P
Sbjct: 209 FNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMR--P 266

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +A + GL+D +   +EV   L       +      +   K    
Sbjct: 267 ALDIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLMEGREVLN----VRYMQRKKLID 322

Query: 261 CDLKNLSISS 270
               + + S+
Sbjct: 323 RVTGSAAESA 332


>gi|238894328|ref|YP_002919062.1| putative periplasmic protease [Klebsiella pneumoniae NTUH-K2044]
 gi|238546644|dbj|BAH62995.1| putative peptidase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 348

 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 107/250 (42%), Gaps = 16/250 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
            +   +  P    +  +G ++        +E+   +      D    +++ L SPGG  +
Sbjct: 92  GNAEPEGKPRAWVLDFKGSMDAHEVNSLREEITAVLAAAKARDQ---VVIRLESPGGVVH 148

Query: 82  AGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   +Q++++++  +T  V ++AAS GY+++C +N IV+A  +++GSIGV+ Q P 
Sbjct: 149 GYGLAASQLQRLRDKQIPLTVAVDKVAASGGYMMACVANKIVSAPFAILGSIGVVAQIPN 208

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           +  FL    + I+   +   K   +   E   +  +  ++ ++ ++H F   V   R  P
Sbjct: 209 LHRFLKNKDIDIELHTAGQYKRTLTMLGENTEEGRRKFREDLNETHHLFKDFV--HRMRP 266

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +A + GL+D V   +E+   L              +   K    
Sbjct: 267 GLDIEQVATGEHWYGVQALEKGLVDAVETSDELLLGLIESHEVIG----VRYQQRKKMLD 322

Query: 261 CDLKNLSISS 270
               + + S+
Sbjct: 323 RFTGSAAESA 332


>gi|2499884|sp|Q48513|PFAP_LEPBO RecName: Full=Putative peptidase pfaP; AltName: Full=PF-associated
           peptidase; AltName: Full=Periplasmic flagella-associated
           protein; Flags: Precursor
 gi|440320|gb|AAA79884.1| hypothetical peptidase [Leptospira borgpetersenii]
          Length = 204

 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 92/180 (51%), Gaps = 3/180 (1%)

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
            +++  + ++  + +MAAS GY I+ +++ I A   ++ GSIGVL Q+   +     LGV
Sbjct: 1   MRLRKTRKIVVSMKDMAASGGYYIASSADKIFALSGTITGSIGVL-QWLRYQRAFGSLGV 59

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
            +++ K    K   S F +  P+  +M+Q ++  +Y+ FV+ V++ RN        L++G
Sbjct: 60  KMRTYKEGKYKDSLSLFRDSTPEEDEMIQKMLSDTYNEFVQDVAKGRNQTVKSVQNLAEG 119

Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270
           RI++G +A +  L+D +GG++E  + L  L        +  +   ++ +      L    
Sbjct: 120 RIYSGQDAFRNKLVDEIGGRKEALEELSRLCQYDGEIPL--YEEEESPFDRLFMMLGSKM 177


>gi|77919415|ref|YP_357230.1| periplasmic serine proteases [Pelobacter carbinolicus DSM 2380]
 gi|77545498|gb|ABA89060.1| protein C, Serine peptidase, MEROPS family S49 [Pelobacter
           carbinolicus DSM 2380]
          Length = 383

 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 14/209 (6%)

Query: 36  PHVARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
              A I I+G +                + L    +    DD+   +I  + SPGG    
Sbjct: 62  NGTAIIGIQGTLVHKSGYLDALSGLSSYESLRSSFDLALEDDAVRRIIFDVDSPGGEVTG 121

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
              +   I + + +KP+   V+E   SA Y ++ A++ I+   T   GSIGV+  +    
Sbjct: 122 CFDLADHIYQSRGKKPITAVVNESCYSAAYALASAADKIILPRTGGAGSIGVILAHVDQS 181

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
            F +K G+++  + +   KA+ SP   ++ +A   +Q +V+ +Y  FV  VS +RN+  +
Sbjct: 182 GFNEKNGLAVTHIFAGAHKADFSPHHALSEEAKTRLQGMVNETYSLFVSTVSRNRNMSAE 241

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
                ++  I+ G++A   GL D V   +
Sbjct: 242 AVRK-TEACIYIGSKAVAAGLADQVAAVD 269


>gi|237808143|ref|YP_002892583.1| putative periplasmic protease [Tolumonas auensis DSM 9187]
 gi|237500404|gb|ACQ92997.1| Peptidase S49 domain protein [Tolumonas auensis DSM 9187]
          Length = 339

 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 113/255 (44%), Gaps = 18/255 (7%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYA 82
           +  E     +  I  +G ++  +      E+   +     DD    +++ + S GG  + 
Sbjct: 85  NAAESTKSRLFLIDFKGGMDAREVSSLREEITAVLTMAKSDDE---VLIRVESGGGVVHG 141

Query: 83  GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  +Q+++++   +   + ++AAS GY+++C +  I+AA  ++VGSIGV+ Q P  
Sbjct: 142 YGLGASQLQRIRDQGLYLTVSIDKVAASGGYMMACVAQKIIAAPFAIVGSIGVVAQLPNF 201

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  V ++   +   K   + F E + KA +  +  +++ +  F + VSE R  P 
Sbjct: 202 NRLLKKHDVDVELHTAGQFKRTLTIFGENDDKAREKFKAELETVHQQFKQFVSEHR--PR 259

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W  AEAKK+GL+D +   ++   S +        +++            
Sbjct: 260 MDMEQIATGEHWLAAEAKKLGLVDELRTSDDYLLSQFEQ------KQVIKVTYHNKKGLA 313

Query: 262 DLKNLSISSLLEDTI 276
           D  + + S  +E  +
Sbjct: 314 DRFSHAASLAVERAV 328


>gi|224011339|ref|XP_002295444.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209583475|gb|ACI64161.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 384

 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 56/272 (20%), Positives = 105/272 (38%), Gaps = 20/272 (7%)

Query: 35  SPHVARIAIRGQIEDSQELI--ERIERI--SRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
              +A +     I+D+   +  E +             +++ L SPGG+          +
Sbjct: 87  KDIIATVDENAPIDDATTSLSTEELRDKPQYATPKVEVIVL-LESPGGAVSNYGLASSHL 145

Query: 91  QKVKNR---KPVITEVHEMAASAGYLISCASN-IIVAAETSLVGSIGVLFQYPYVKPFLD 146
           Q++++    K  I      A+    +   +S   +  A  ++VGSIGV+ Q   V+  L+
Sbjct: 146 QRLRSTPGVKLTICVDTVAASGGYMMACMSSPGQLYCAPFAMVGSIGVIGQSLNVQKTLE 205

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           K GV     +   MK       EV  + +  MQD+VD  +  F   V+ +R   +     
Sbjct: 206 KYGVRPYVFRGGTMKNPVGMVGEVTKEGIGHMQDMVDRIHDAFREHVANARENSHH--DG 263

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF------ 260
           +S G ++ G +A K+GL+D +   +E           + ++ I +  P     F      
Sbjct: 264 ISTGDVFIGMQALKLGLVDRLITSDEYIAERIQD-GSRVLKLIVNQRPLGLSSFFMGHPP 322

Query: 261 -CDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291
                 +S  + + D +  +       L A W
Sbjct: 323 PRRAPGMSSGNGMLDILKKIVLRSTHSLMA-W 353


>gi|283785434|ref|YP_003365299.1| protease [Citrobacter rodentium ICC168]
 gi|282948888|emb|CBG88490.1| probable protease [Citrobacter rodentium ICC168]
          Length = 348

 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 55/267 (20%), Positives = 116/267 (43%), Gaps = 16/267 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYA 82
           + +   ++P V  +  +G ++  +  +  +       ++       ++V L SPGG  + 
Sbjct: 92  AENSATDTPRVWVLDFKGSMDAHE--VNALREEVTAVLAVVKPQDQVVVRLESPGGVVHG 149

Query: 83  GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  +Q+++++   +T  V ++AAS GY+++C ++ IV+A  +++GSIGV+ Q P  
Sbjct: 150 YGLAASQLQRLRDKNIPLTVAVDKVAASGGYMMACVADKIVSAPFAIIGSIGVVAQIPNF 209

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
             FL    + I+   +   K   +   E   +  Q  ++ ++ ++  F   V   R  P 
Sbjct: 210 NRFLKGKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHQLFKAFV--HRMRPK 267

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
               V++ G  W G +A + GLID +   +EV  +L         R++ +    +     
Sbjct: 268 LDIEVVATGEHWYGQQALEKGLIDEINTSDEVILNLM------DGREVLNVRYLQRKKLM 321

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D    S +   +  +    Q   + L 
Sbjct: 322 DRFTGSAAESADRLLLRWWQRGQKPLM 348


>gi|157412171|ref|YP_001481512.1| hypothetical protein APECO1_O1R156 [Escherichia coli APEC O1]
 gi|99867196|gb|ABF67841.1| conserved hypothetical protein [Escherichia coli APEC O1]
          Length = 393

 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 124/367 (33%), Gaps = 80/367 (21%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSS------HVEDNSPHVARIAIRGQIEDSQE----- 52
           + +   T  V +SL+ +T V FS+ +        E    H+A I I G++    E     
Sbjct: 27  MFRIHTTAKVAMSLIAMTAVGFSFYNLYEQWQDAEGKKDHIAVIRISGEMGTGSETGDGT 86

Query: 53  -LIERIERISRDDSATA------------------------------------------- 68
            +   + +   +  A A                                           
Sbjct: 87  VIATALAKAYNNPHAKAVIIEAESGGGGPSDAIIIYRQINALKNHQPQIERVSDAGCSLS 146

Query: 69  -LIVSLSSPGGSAYAGEAIF---RAIQKVKNR------------KPVITEVHEMAASAGY 112
            +    S+  GS   G+       +++ + +             KP+I  V  + ASA Y
Sbjct: 147 SVAADKSNKTGSTERGDEARSKQNSLEVLSSGTGRFFSDIADSYKPIIVSVKGICASACY 206

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
                ++ I A   +L+GSIGV   +  +   +  +GV  + + +   K    PF  ++ 
Sbjct: 207 YAVSPADAIYADSNALIGSIGVRMDHWNLSEIMSTVGVKNEPLTAGEFKDALDPFHPLSD 266

Query: 173 KAVQMMQDVV-DSSYHWFVRLVSESRNIPY-----DKTLVLSDGRIWTGAEAKKVGLIDV 226
              + MQ  + ++ +  F+  V   R            + L  GR+W   +A K GL+D 
Sbjct: 267 STREFMQKEILNTMHEKFITDVELGRGKKLLSRHDADAVSLYSGRVWPTPQAVKYGLVDG 326

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
                E+   L  +    S    K++N P       L  L   S   +++       V+ 
Sbjct: 327 DLTSVEIRTRLSKM---YSTDTFKNYNEPHRNLRSALGMLMSLSSNIESLTGTTTRLVES 383

Query: 287 LWAVWNP 293
           + A   P
Sbjct: 384 VNATSYP 390


>gi|260174732|ref|ZP_05761144.1| putative proteinase [Bacteroides sp. D2]
 gi|315922992|ref|ZP_07919232.1| protease [Bacteroides sp. D2]
 gi|313696867|gb|EFS33702.1| protease [Bacteroides sp. D2]
          Length = 288

 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 81/228 (35%), Gaps = 6/228 (2%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
                 +  VA I + G +   +     +++  IS +      ++ ++ PGG     +  
Sbjct: 63  DDDTLPADSVAVIILEGTLYSWETYRLEQQLRDISGNPKICGAVLWINGPGGMVAHVDLA 122

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF--QYPYVKPF 144
            + I +  + KP+ T V     SA + +  A+     A          +      + + F
Sbjct: 123 AKMIAE--SSKPIATYVAGTMGSAHFWLGTAAGRTFIASPMCEVGSVGIMLTYQSFKEYF 180

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
             +     +    S         +       + ++  +   +  F   +S +  I YD  
Sbjct: 181 RKQGIDYREIYPDSADLKNYETRAIEKDNNEEPIKQRLVVMHRIFCDAISRNLGIAYDPE 240

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
           L L  G+I+TG  A   G ID  G  E+  + + A    + + ++ + 
Sbjct: 241 LPLFRGQIFTGDVAVANGYIDQFGTLEDAVKWVLAQATVRKVNEMYNI 288


>gi|148652799|ref|YP_001279892.1| putative periplasmic protease [Psychrobacter sp. PRwf-1]
 gi|148571883|gb|ABQ93942.1| peptidase S49 [Psychrobacter sp. PRwf-1]
          Length = 332

 Score = 82.0 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 107/267 (40%), Gaps = 12/267 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81
            S  +     V  +   G I+ S      +E+   I   ++ D    +++ L S GG  +
Sbjct: 56  KSKAKAKQKRVFVLDFDGDIKASAVKHLREEISTIISGANKGDE---VVIRLESGGGMVH 112

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           +       + ++K+    +   V ++AAS GY+++C ++ I+AA  +++GSIGV+ Q P 
Sbjct: 113 SYGLAAAQLVRLKDAGLTLTIAVDKIAASGGYMMACVADKILAAPFAVIGSIGVVSQMPN 172

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
              +L K  +  +   +   K   + F E +        + ++ ++  F   V+  R  P
Sbjct: 173 FNKWLKKHDIDYEMFTAGEYKRTVTVFGENDDDDRAKYTEELEQTHQLFKHFVTTYR--P 230

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 +++G  W G +A  + L+D +   +             +I   +     +   F
Sbjct: 231 QLDLTKVANGDHWYGEDALHLNLVDELTTSDAYLLKQMDEHQVYAILSRQKPTLAEKLGF 290

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGL 287
            +  + ++S L+              L
Sbjct: 291 ANAAHSAVSGLVSTATKSALTVLGDKL 317


>gi|297734122|emb|CBI15369.3| unnamed protein product [Vitis vinifera]
          Length = 302

 Score = 82.0 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 88/247 (35%), Gaps = 15/247 (6%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDD 64
            +V L ++       V   S  V  + +RGQI D             ++ E   + + D 
Sbjct: 7   FVVKLRMLIAFPWERVRKGS--VFTMKLRGQISDQLKSRFSSGLSLPQICENFIKAAYDP 64

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
             + + + +          E I R I   K     I           Y +  A + + A 
Sbjct: 65  RISGIYLHIEPLSCGWGKVEEIRRHILDFKKSGKFIVAYAPACGEKEYYLGSACDELYAP 124

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVV 182
            ++     G+  Q  ++    +K+G+  +  +    K+  +      ++ +  +M+  ++
Sbjct: 125 PSAYFSLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 184

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           D+ Y  ++  +S ++    + T    +  ++   + K+ G I  +   +EV   L     
Sbjct: 185 DNIYGNWLDKISSAKGKKREDTENFINEGVYQVEKLKEEGWITNINYDDEVISILKERLG 244

Query: 243 DQSIRKI 249
               + +
Sbjct: 245 QPKDKNL 251


>gi|322833314|ref|YP_004213341.1| Peptidase S49 domain protein [Rahnella sp. Y9602]
 gi|321168515|gb|ADW74214.1| Peptidase S49 domain protein [Rahnella sp. Y9602]
          Length = 347

 Score = 82.0 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 113/271 (41%), Gaps = 18/271 (6%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGG 78
               +    + P +  +  +G ++        +E+   +   + +D    +++ L SPGG
Sbjct: 88  LQAKTGSSKSKPCLYVLDFKGSMDAHEVTSLREEISAVLAVATPEDE---VLLRLESPGG 144

Query: 79  SAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
             +        + +++     +T  V ++AAS GY+++C ++ IVAA  +++GSIGV+ Q
Sbjct: 145 VVHGYGLAASQLVRLRQSGIRLTVAVDKVAASGGYMMACVADRIVAAPFAIIGSIGVVAQ 204

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
            P     L +  + I+   +   K   +   E   +  +  ++ ++ ++  F   V ++R
Sbjct: 205 IPNFNRLLKRNDIDIELHTAGEFKRTLTLLGENTEEGREKFREDLNETHVLFKEFVHQNR 264

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
             P      ++ G  W G +A++ GLID +G  +++   +  +       ++      + 
Sbjct: 265 --PSLDIDAVATGEHWFGTQARENGLIDAIGTSDDLL--IAEM----KNHEVIAVRYSRR 316

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
               D    S +   +       Q   + L 
Sbjct: 317 KRMMDRFTGSAAESADRLFLRWLQRSQKPLL 347


>gi|213618610|ref|ZP_03372436.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
          Length = 203

 Score = 82.0 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 4/175 (2%)

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
           Y IS  +N IVA+ ++L GSIG+      V+  L  +GV    V +SP+    S    ++
Sbjct: 4   YWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLAD-ISMTKALS 62

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
           P+  QMMQ  ++  Y  F+ LV+++R    ++   ++ G +WTG +AK  GL+D +G  +
Sbjct: 63  PEVQQMMQLSIEYGYKRFITLVADARKRTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFD 122

Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS--SLLEDTIPLMKQTKV 284
           +       L        +  +          + +++ S  ++L + I  M    +
Sbjct: 123 DAVAKAAELAKL-KQWHLDYYQDEPTVLDMVMDSMTGSVRAMLPEAIQAMLPAPL 176


>gi|193064873|ref|ZP_03045950.1| putative peptidase, S49 (protease IV) family [Escherichia coli E22]
 gi|192927558|gb|EDV82175.1| putative peptidase, S49 (protease IV) family [Escherichia coli E22]
          Length = 288

 Score = 82.0 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 87/218 (39%), Gaps = 14/218 (6%)

Query: 38  VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           VA I I G              +     + +       D   + + + + SPGG      
Sbjct: 71  VAVIPICGTLVQKLGSLRPYSGMTGYDGIRQAFLTAMEDPDISGICLDIDSPGGEVAGCF 130

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +   I   + +KP+   + E A SA Y I+ A++ I    T  VGS+GV+  +      
Sbjct: 131 DLVDVIYGSRGKKPIHAILTESAYSAAYAIASAADRISVPRTGGVGSVGVITMHLDWTQR 190

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           +   G+ +  +     KAE SP  E++ +A+  +Q  +++    FV  V+ +R I     
Sbjct: 191 IKDDGLKVTIITYGSRKAEGSPLRELSDEALAAIQQDINTMGELFVNTVARNRGISAKVI 250

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
                   +  A+  ++GL D V   +  +++L     
Sbjct: 251 KSTQAAC-FMAADGVEIGLADEVCPPDAAFKNLLEKTG 287


>gi|254786154|ref|YP_003073583.1| periplasmic protease [Teredinibacter turnerae T7901]
 gi|237686261|gb|ACR13525.1| putative protease SohB [Teredinibacter turnerae T7901]
          Length = 353

 Score = 82.0 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 101/251 (40%), Gaps = 12/251 (4%)

Query: 35  SPHVARIAIRGQIEDSQ-----ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
              V      G I  S+     E+I  I  ++       ++V L S GG  ++       
Sbjct: 103 KKRVFVTNFDGDIRASETENLREVITSILSLAT--PQDEVVVRLESQGGMVHSYGFAASQ 160

Query: 90  IQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
           + +++ +   +T     +AAS GY+++C ++ IV+A  +++GSIGV+ Q P     L K 
Sbjct: 161 LSRIREKNIPLTVCVDMVAASGGYMMACVADKIVSAPFAILGSIGVVAQLPNFHRLLKKH 220

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
            V  + + +   K   + F E   K  Q   + ++ ++  F   +  +R         ++
Sbjct: 221 DVDYEMLTAGEYKRTLTMFGENTDKGRQKFVEDLEDTHTLFKDFIRSNR--AIVDVDAVA 278

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
            G +W G  A +  L+D +   ++    LY+      I  ++                + 
Sbjct: 279 TGEVWFGQRALEAKLVDCIQTSDQYLVDLYSEADVFEIEFVE--KKKLAEKLGISVAAAA 336

Query: 269 SSLLEDTIPLM 279
            +++   +  +
Sbjct: 337 DTVINRWLGQL 347


>gi|163796778|ref|ZP_02190736.1| Periplasmic serine protease [alpha proteobacterium BAL199]
 gi|159178032|gb|EDP62579.1| Periplasmic serine protease [alpha proteobacterium BAL199]
          Length = 425

 Score = 82.0 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 97/260 (37%), Gaps = 16/260 (6%)

Query: 35  SPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
            P +A + + G +                 ++ +++E +        +++ L +PGG A 
Sbjct: 55  EPGIAVVPVLGTLVRRSSYLAAASGLTAYADIGDKVEAVLSSADVRGVLLELDTPGGEAG 114

Query: 82  AGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
               +   + +++  + KP+     E A SAGY I+  +  I    T+ VGSIGV+  + 
Sbjct: 115 GVFDLADRLSELQRASGKPIWAIADEAALSAGYAIASVAEQIWLTRTAEVGSIGVVAVHV 174

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                  + G++   V +   K + SP   ++  A   +Q  VD+    FV LV+ +R I
Sbjct: 175 DQSAADRQAGLAYSFVHAGAHKIDGSPHLPLSDSARARIQADVDALNDAFVDLVARNRGI 234

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
                    +   + G  A   GL D +G  + V  +             + +   K   
Sbjct: 235 TAIVIRQT-EAATFRGERAVAAGLADRIGNFDAVLTAFAERLGRPRSIAARAFPHVKETP 293

Query: 260 FCDLKNLSISSLLEDTIPLM 279
                     +  +   P M
Sbjct: 294 MKTGLPEQPPAGADALEPAM 313


>gi|206578027|ref|YP_002238995.1| peptidase, S49 (protease IV) family [Klebsiella pneumoniae 342]
 gi|290512950|ref|ZP_06552314.1| serine protease SohB [Klebsiella sp. 1_1_55]
 gi|206567085|gb|ACI08861.1| peptidase, S49 (protease IV) family [Klebsiella pneumoniae 342]
 gi|289774563|gb|EFD82567.1| serine protease SohB [Klebsiella sp. 1_1_55]
          Length = 348

 Score = 82.0 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 107/250 (42%), Gaps = 16/250 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
            +   +  P    +  +G ++        +E+   +      D    +++ L SPGG  +
Sbjct: 92  GNVEPEGKPRAWVLDFKGSMDAHEVNSLREEITAVLAAAKARDQ---VVIRLESPGGVVH 148

Query: 82  AGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   +Q++++++  +T  V ++AAS GY+++C +N IV+A  +++GSIGV+ Q P 
Sbjct: 149 GYGLAASQLQRLRDKQIPLTVAVDKVAASGGYMMACVANKIVSAPFAILGSIGVVAQIPN 208

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           +  FL    + I+   +   K   +   E   +  +  ++ ++ ++H F   V   R  P
Sbjct: 209 LHRFLKNKDIDIELHTAGQYKRTLTMLGENTEEGRRKFREDLNETHHLFKDFV--HRMRP 266

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G +A + GL+D V   +E+   L              +   K    
Sbjct: 267 GLDIEQVATGEHWYGVQALEKGLVDAVETSDELLLGLMESHEVIG----VRYQQRKKMLD 322

Query: 261 CDLKNLSISS 270
               + + S+
Sbjct: 323 RFTGSAAESA 332


>gi|90412193|ref|ZP_01220199.1| putative sohB protein, peptidase U7 family protein [Photobacterium
           profundum 3TCK]
 gi|90326917|gb|EAS43302.1| putative sohB protein, peptidase U7 family protein [Photobacterium
           profundum 3TCK]
          Length = 353

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 96/240 (40%), Gaps = 14/240 (5%)

Query: 40  RIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
            I   G I+  +      E+   I      D    +++ L + GG  +        + ++
Sbjct: 109 VIDFHGSIDAREVSSLREEVSAIIAVAIEGDE---VLLRLETGGGMVHGYGLASSQLDRL 165

Query: 94  KNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           K+        V ++AAS GY+++C ++ I++A  ++VGSIGV+ Q P     L K  +  
Sbjct: 166 KSAGIKLTISVDKVAASGGYMMACVADKIISAPFAIVGSIGVIAQLPNFSKVLKKNDIEF 225

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
           + + +   K   + F E   KA    Q  ++ ++  F   ++  R  P      ++ G  
Sbjct: 226 EQITAGEFKRTLTMFGENTDKARDKFQVEIEETHGLFKDFIAIHR--PELDLEKVATGEH 283

Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
           W G +A  +GL+D +G  +             ++R +                 +  +LL
Sbjct: 284 WFGNQALNLGLVDEIGTSDNFITHACKDREVLNVRFV--QRKKLAEKLAGATGEAADNLL 341


>gi|38348035|ref|NP_941284.1| putative peptidase [Serratia marcescens]
 gi|190410362|ref|YP_001965865.1| putative peptidase [Klebsiella pneumoniae]
 gi|226807771|ref|YP_002791467.1| hypothetical protein pEC-IMP_205 [Enterobacter cloacae]
 gi|226810085|ref|YP_002791780.1| hypothetical protein pEC-IMPQ_212 [Enterobacter cloacae]
 gi|38259512|emb|CAE51740.1| putative peptidase [Serratia marcescens]
 gi|146151156|gb|ABQ02922.1| putative peptidase [Klebsiella pneumoniae]
 gi|226425998|gb|ACO54091.1| conserved hypothetical protein [Enterobacter cloacae]
 gi|226426312|gb|ACO54404.1| conserved hypothetical protein [Enterobacter cloacae]
          Length = 393

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 124/367 (33%), Gaps = 80/367 (21%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSS------HVEDNSPHVARIAIRGQIEDSQE----- 52
           + +   T  V +SL+ +T V FS+ +        E    H+A I I G++    E     
Sbjct: 27  MFRIHTTAKVAMSLIAMTAVGFSFYNLYEQWQDAEGKKDHIAVIRISGEMGTGSETGDGT 86

Query: 53  -LIERIERISRDDSATA------------------------------------------- 68
            +   + +   +  A A                                           
Sbjct: 87  VIATALAKAYNNPHAKAVIIEAESGGGGPSDAIIIYRQINALKNHQPQIERVSDAGGSLS 146

Query: 69  -LIVSLSSPGGSAYAGEAIF---RAIQKVKNR------------KPVITEVHEMAASAGY 112
            +    S+  GS   G+       +++ + +             KP+I  V  + ASA Y
Sbjct: 147 SVAADKSNKTGSTERGDEARSKQNSLEVLSSGTGRFFSDIADSYKPIIVSVKGICASACY 206

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
                ++ I A   +L+GSIGV   +  +   +  +GV  + + +   K    PF  ++ 
Sbjct: 207 YAVSPADAIYADSNALIGSIGVRMDHWNLSEIMSTVGVKNEPLTAGEFKDALDPFHPLSD 266

Query: 173 KAVQMMQDVV-DSSYHWFVRLVSESRNIPY-----DKTLVLSDGRIWTGAEAKKVGLIDV 226
              + MQ  + ++ +  F+  V   R            + L  GR+W   +A K GL+D 
Sbjct: 267 STREFMQKEILNTMHEKFITDVELGRGKKLLSRHDADAVSLYSGRVWPTPQAVKYGLVDG 326

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
                E+   L  +    S    K++N P       L  L   S   +++       V+ 
Sbjct: 327 DLTSVEIRTRLSKM---YSTDTFKNYNEPHRNLRSALGMLMSLSSNIESLTGTTTRLVES 383

Query: 287 LWAVWNP 293
           + A   P
Sbjct: 384 VNATSYP 390


>gi|226330245|ref|ZP_03805763.1| hypothetical protein PROPEN_04158 [Proteus penneri ATCC 35198]
 gi|225201040|gb|EEG83394.1| hypothetical protein PROPEN_04158 [Proteus penneri ATCC 35198]
          Length = 286

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 102/238 (42%), Gaps = 15/238 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGS 79
           +         P +  +   G ++        +E+   +     +D    +++ L SPGG 
Sbjct: 28  AKEGKKGVVKPCLYVLDFNGSMDAHEVGALREEISAILSVAQANDE---VLLRLESPGGM 84

Query: 80  AYAGEAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +        + ++K +   +T  V ++AAS GY+++C ++ IVAA  +++GSIGV+ Q 
Sbjct: 85  VHGYGLAAAQLTRLKEKGIKLTAVVDKVAASGGYMMACVADKIVAAPFAIIGSIGVVAQI 144

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P +   L K  + ++   +   K   +   E   +  +  +  ++ ++  F   V + R 
Sbjct: 145 PNIHRLLKKNDIDVELHTAGEYKRTLTLLGENTEEGREKFKQDLNETHLLFKSFVHKYR- 203

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
            P      ++ G  W G+EA   GLID VG  ++    L     D  +  ++     K
Sbjct: 204 -PQLDIDSVATGEYWYGSEALNRGLIDEVGVSDD---WLINHINDFEVLSVQYVTKKK 257


>gi|37526334|ref|NP_929678.1| putative periplasmic protease [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785765|emb|CAE14813.1| Possible protease sohB [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 348

 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 109/245 (44%), Gaps = 6/245 (2%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIE--DSQELIERIERISRDDSATA-LIVSLSSPGGSAYA 82
           + + H     P +  +  +G ++  +   L E I  I     A   +++ L SPGG  + 
Sbjct: 90  AKTGHKGLQKPCLYVLDFKGSMDAHEVDSLREEISAILAVADAKDEVLLRLESPGGMVHG 149

Query: 83  GEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + +++ +       V ++AAS GY+++C ++ +VAA  +++GSIGV+ Q P +
Sbjct: 150 YGLAASQLARLRQKGIRLTIVVDKVAASGGYMMACVADRVVAAPFAIIGSIGVVAQIPNI 209

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  + ++   +   K   +   E   +  +  Q+ ++ ++  F   +   R  P 
Sbjct: 210 HKLLKKNDIDVELHTAGEYKRTLTVLGENTEQGRKKFQEDLNQTHELFKSFIHTHR--PS 267

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G++AK+ GLID +G  +++  +         +   +     + +   
Sbjct: 268 LDVESVATGEYWYGSQAKEKGLIDEIGVSDDLLIAQIDNCEVIGVSYTRRKRMVERFTGN 327

Query: 262 DLKNL 266
            ++++
Sbjct: 328 AMESI 332


>gi|330946542|gb|EGH47564.1| peptidase S49, SppA [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 195

 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 8/147 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61
             K        V + V    +       S H A I ++G I D     ++ ++  +++  
Sbjct: 49  FFKLLTFAFLFVAVIVPMLDFEGGTSRRSSHTALIDVQGVIADKEAASAENIVTALQKAF 108

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118
            D+    +I+ ++SPGGS      ++  I++++  KP I     +    AS  Y I+ A+
Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRATKPDIKVYAVITDLGASGAYYIASAA 168

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFL 145
           + I A + SLVGSIGV          L
Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGSL 195


>gi|225155745|ref|ZP_03724233.1| Periplasmic serine protease (ClpP class)-like protein [Opitutaceae
           bacterium TAV2]
 gi|224803539|gb|EEG21774.1| Periplasmic serine protease (ClpP class)-like protein [Opitutaceae
           bacterium TAV2]
          Length = 282

 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 94/218 (43%), Gaps = 18/218 (8%)

Query: 38  VARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           +A I + G I               ++++   I         + ++++++SPGG+     
Sbjct: 63  IAEIPVFGPIGKGLGSFEKSCGATSTEDVANDITEALGRRDVSGILLNINSPGGTTTGVP 122

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +  AI +    KPV+     + ASA Y +   +++IVA++++ VGS+GV   +      
Sbjct: 123 ELASAIARAAENKPVVAFTDSLMASAAYWLGSQADMIVASKSASVGSVGVYIPFLDSSRR 182

Query: 145 LDKLGVSIKSVKS--SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
            + +G+ +  VK+    +K    P + +     + +Q   D  +  F   +   R    D
Sbjct: 183 AEMMGLKVDVVKNKEGTLKGMGIPGTSLTEAQREHLQQRADEIFSMFKGDIKSRRPGVKD 242

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +      G+    A +++ GLID +G  +    SL AL
Sbjct: 243 EA---LRGQTLLAAGSRETGLIDDIGDIQHARASLAAL 277


>gi|167034552|ref|YP_001669783.1| putative periplasmic protease [Pseudomonas putida GB-1]
 gi|166861040|gb|ABY99447.1| Peptidase S49 domain protein [Pseudomonas putida GB-1]
          Length = 339

 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 107/266 (40%), Gaps = 20/266 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAGE 84
                ++   V  +   G I+ S  + L   I  +    +    +++ L S GG  ++  
Sbjct: 84  KKGKAEDKGRVFVLDFDGDIKASATESLRNEITALLTLATPRDEVVLRLESGGGLVHSYG 143

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                + +++     +T    ++AAS GY+++C    IV+A  +++GSIGV+ Q P V  
Sbjct: 144 LAASQLARIRQAGIPLTVCIDKVAASGGYMMACIGEKIVSAPFAVLGSIGVVAQLPNVNR 203

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K  +  + + +   K   + F E   K  +  Q+ +D ++  F   V+  R  P   
Sbjct: 204 LLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLDITHQLFKDFVARYR--PQLH 261

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G +W G  A    L+D +   +E             +     +   K+      
Sbjct: 262 IDEVATGEVWLGVAALNRKLVDELQTSDEYLSERARNANLFHLH----YAERKSLQERI- 316

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289
             ++ S  +E+T+         GLW+
Sbjct: 317 -GMAASGTVENTL--------VGLWS 333


>gi|255021016|ref|ZP_05293069.1| Peptidase S49-like protein [Acidithiobacillus caldus ATCC 51756]
 gi|254969430|gb|EET26939.1| Peptidase S49-like protein [Acidithiobacillus caldus ATCC 51756]
          Length = 331

 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 10/221 (4%)

Query: 29  SHVEDNSPHVARIAIRG-----QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                       +  +G      +   +E +  I   +R      +++ L S GG   A 
Sbjct: 80  DEAAQVGDCTFVLDFKGDLRASAVASLREEVSAILAAAR--PGDRVLLRLESGGGMVNAY 137

Query: 84  EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                 + +++  +  +   V ++AAS GYL++  ++ IVA+  +LVGSIGV+ Q P   
Sbjct: 138 GLAAAQLLRLRAAQLHLTVLVDQVAASGGYLMAVTAHEIVASPFALVGSIGVVAQIPNFN 197

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
            +L +  +  +   +   K   + F E      Q +++ ++  +  F   V+E R  P  
Sbjct: 198 RWLRERHIDFEQFTAGKYKRTVTLFGENTDAGRQKLREELEDIHAMFRHFVAEYR--PSL 255

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
               ++ G  W G  A+++GL+D +   + V Q     G  
Sbjct: 256 DLEQVATGEAWLGIRAQELGLVDRLATSDTVIQEAADRGRV 296


>gi|52628202|gb|AAU26943.1| signal peptide peptidase SppA (protease IV) [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 326

 Score = 81.2 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 102/232 (43%), Gaps = 16/232 (6%)

Query: 36  PHVARIAIRGQIEDSQELIERIERISRD-----DSATALIVSLSSPGGSAYAGEAIFRAI 90
           P +  I   G I+ +Q  +E++                ++V L SPGG+          +
Sbjct: 90  PVLYVIDFSGDIKATQ--VEQLRDEVTSVLSIAKPEDEVLVRLESPGGAVNGYGLAASQL 147

Query: 91  QKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           Q+++++K      + +MAAS GYL++C +N I+AA  +++GSIGV+ Q P    +L K  
Sbjct: 148 QRIRDKKIPLTVSIDKMAASGGYLMACVANKIIAAPFAIIGSIGVVAQIPNFHRWLKKNN 207

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           + ++ + +   K   + F+E   K  +  Q+ ++  +  F   V ++R         ++ 
Sbjct: 208 IDVELLTAGEYKRTLTLFAENTEKGRKKFQEDLEKIHTAFREYVLKNR--SQLDIDKVAT 265

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQS------LYALGVDQSIRKIKDWNPP 255
           G  W   +A  + L+D +   +E           + L V   +  I     P
Sbjct: 266 GEHWIAKDAFDLRLVDKLATSDEYLIEKMAEFNAFKLTVLAKLPIISKVLKP 317


>gi|71065564|ref|YP_264291.1| serine peptidase [Psychrobacter arcticus 273-4]
 gi|71038549|gb|AAZ18857.1| protein C. Serine peptidase. MEROPS family S49 [Psychrobacter
           arcticus 273-4]
          Length = 402

 Score = 81.2 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 111/268 (41%), Gaps = 22/268 (8%)

Query: 17  LVTLTVVYFSWSSHVEDNSP------HVARIAIRGQ-------------IEDSQELIERI 57
           L ++     S     + N P       VA I +RG              +     L + I
Sbjct: 27  LASIDFKALSRYGDDDVNEPAYTVENGVATIDVRGLLVPETSSDYRSWGVTGYANLADYI 86

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117
           ++ + D + T++++ + S GG     + I   I   ++ KP+ T V   A SA Y ++ +
Sbjct: 87  QQANDDYAVTSIVLDIDSGGGYVAGLDGITETI--YQSAKPIETFVSGDAYSAAYWLAAS 144

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           ++ I A++ S +GSIGV   +      L+  G+ IK  +S   K   + F+ ++ +    
Sbjct: 145 TSKITASKKSGIGSIGVYGDHAEKSKALEDAGIKIKRFRSGRWKGAFNWFTPLSAEEETR 204

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           +QD ++ S   F   V+  RNI         +G  ++ A+AK++GLID +     V  S 
Sbjct: 205 LQDGINESASIFFNYVAAQRNIDVKTIQG-WEGDDFSAAKAKELGLIDAIADSVAVSSST 263

Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKN 265
                +     + +    +        +
Sbjct: 264 KQSNNNPEEYDLNELEKAQAEIAALKAD 291


>gi|54296876|ref|YP_123245.1| putative periplasmic protease [Legionella pneumophila str. Paris]
 gi|229270458|ref|YP_094890.2| putative periplasmic protease [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|53750661|emb|CAH12068.1| hypothetical protein lpp0917 [Legionella pneumophila str. Paris]
          Length = 312

 Score = 81.2 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 102/232 (43%), Gaps = 16/232 (6%)

Query: 36  PHVARIAIRGQIEDSQELIERIERISRD-----DSATALIVSLSSPGGSAYAGEAIFRAI 90
           P +  I   G I+ +Q  +E++                ++V L SPGG+          +
Sbjct: 76  PVLYVIDFSGDIKATQ--VEQLRDEVTSVLSIAKPEDEVLVRLESPGGAVNGYGLAASQL 133

Query: 91  QKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           Q+++++K      + +MAAS GYL++C +N I+AA  +++GSIGV+ Q P    +L K  
Sbjct: 134 QRIRDKKIPLTVSIDKMAASGGYLMACVANKIIAAPFAIIGSIGVVAQIPNFHRWLKKNN 193

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           + ++ + +   K   + F+E   K  +  Q+ ++  +  F   V ++R         ++ 
Sbjct: 194 IDVELLTAGEYKRTLTLFAENTEKGRKKFQEDLEKIHTAFREYVLKNR--SQLDIDKVAT 251

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQS------LYALGVDQSIRKIKDWNPP 255
           G  W   +A  + L+D +   +E           + L V   +  I     P
Sbjct: 252 GEHWIAKDAFDLRLVDKLATSDEYLIEKMAEFNAFKLTVLAKLPIISKVLKP 303


>gi|220920634|ref|YP_002495935.1| peptidase S49 [Methylobacterium nodulans ORS 2060]
 gi|219945240|gb|ACL55632.1| peptidase S49 [Methylobacterium nodulans ORS 2060]
          Length = 420

 Score = 81.2 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 86/229 (37%), Gaps = 14/229 (6%)

Query: 38  VARIAIRGQ------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           V +I ++G             +     +    ER   D     + +   SPGG       
Sbjct: 71  VLQIPVKGVLLHDFSFAVGSLVTGYVYIRRAFERGMADPEVRGIALICDSPGGEVAGNFD 130

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           +   +   +  KPV    HE A SA Y I+ A++ I+ + T  VGSIGV+  +      L
Sbjct: 131 LVDVLYAARGAKPVRAFAHEGAYSAAYSIASAADRIIVSRTGGVGSIGVVTAHIDASGAL 190

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            + G+ +  + +   K + +    + P+    +Q  +D  Y  FV  V+ +R++      
Sbjct: 191 AQAGLKVTFIFAGEHKVDGNSAEPLPPEVKDRIQARIDGLYDIFVAAVARNRSLKETAVR 250

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS-LYALGVDQSIRKIKDWN 253
                  +   EA + GL D VG  ++   +    L        +    
Sbjct: 251 ATK-ALTYAADEAIRTGLADAVGALDDAVAAFAAELTPTAEDPSMITPE 298


>gi|145629712|ref|ZP_01785508.1| protease IV [Haemophilus influenzae 22.1-21]
 gi|144978049|gb|EDJ87828.1| protease IV [Haemophilus influenzae 22.1-21]
          Length = 304

 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/290 (19%), Positives = 112/290 (38%), Gaps = 40/290 (13%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52
            ++ +    V L  V L V   S+SS  + +    S     + + G + D+++       
Sbjct: 14  FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTALTSEGALLLNLDGYLADNRDETLRWQD 73

Query: 53  ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93
                             ++  I++   D     L++ L+   G    A + I  AI   
Sbjct: 74  ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHF 133

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           K+    +    +  +   Y ++  ++ I       V   G+  +  Y K  LDKL V+  
Sbjct: 134 KDAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL------ 205
             +    K+   PF  ++++ +A   MQ  +   ++ +V  VSE+RNI  D  L      
Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDNVLPNAKQY 253

Query: 206 --VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
              L   +  + A A++ GL+  V  + ++ + L AL   +   K + + 
Sbjct: 254 LSDLKALKGNSTAYAQQRGLVTDVVTRLDLDKKLTALFWQRKRWKSEPYR 303


>gi|82701192|ref|YP_410758.1| peptidase S49 [Nitrosospira multiformis ATCC 25196]
 gi|82409257|gb|ABB73366.1| protein C, Serine peptidase, MEROPS family S49 [Nitrosospira
           multiformis ATCC 25196]
          Length = 321

 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 93/226 (41%), Gaps = 16/226 (7%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIE-------------DSQELIERIERISRDDSATAL 69
           + F  S     +   VA I I G I              D + + + +     D S   +
Sbjct: 33  LKFPASQRKSVSQDGVAVIDITGPITPRASFLSLLFGGTDVETIQQDLSAALADSSVNKI 92

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           ++++ SPGG       +   I   ++ KP+ + V  M ASA Y ++ A++ I  ++T+LV
Sbjct: 93  VLNIDSPGGVVSGVSPLADQIFSARSIKPIESFVSGMGASAAYWLAAATSHITISDTALV 152

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+      K      GV    + SS    +        P+ +Q++Q  +DS    F
Sbjct: 153 GSIGVVGTAIDDKARQQMQGVIFHQIVSSNAPKKRP--DPATPEGLQVLQKEIDSLASVF 210

Query: 190 VRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
              V+  R +   K       G +  G EA + GL D +G  E   
Sbjct: 211 TAKVARYRGVNEMKVNSDFGQGGVLVGVEAVRAGLADAIGTFESTL 256


>gi|291617611|ref|YP_003520353.1| SohB [Pantoea ananatis LMG 20103]
 gi|291152641|gb|ADD77225.1| SohB [Pantoea ananatis LMG 20103]
          Length = 348

 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 102/229 (44%), Gaps = 10/229 (4%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYAG 83
             +E   P +  +   G I+ S+  ++ +       ++       +++ L SPGG  +  
Sbjct: 93  GSLETARPTLYVLDFNGSIDASE--VKSLREEVSAVLAVAQPGDEVLLRLESPGGMVHGY 150

Query: 84  EAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                 +Q++++    +   V ++AAS GY+++C ++ IVAA  +++GSIGV+ Q P   
Sbjct: 151 GLAASQLQRLRDAGLTLTAAVDKVAASGGYMMACVASQIVAAPFAVIGSIGVVAQIPNFN 210

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L +  + ++   +   K   + F E   +  +  Q  ++ ++  F + V E R  P  
Sbjct: 211 RLLKRNDIDVELHTAGQYKRTLTLFGENTEEGREKFQQDLNETHLLFKQFVHEMR--PSL 268

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
               ++ G  W G +A  +GLID +   +++            +  ++ 
Sbjct: 269 DIDRVATGEHWYGRQALTLGLIDRISTSDDLIIQHMDKFTVLGVNYVRR 317


>gi|83593390|ref|YP_427142.1| peptidase S49 [Rhodospirillum rubrum ATCC 11170]
 gi|83576304|gb|ABC22855.1| Peptidase S49 [Rhodospirillum rubrum ATCC 11170]
          Length = 264

 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 100/254 (39%), Gaps = 21/254 (8%)

Query: 44  RGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ--KVKN 95
            G I           L   I+R  R     AL++  +SPGGS    + I   I+    + 
Sbjct: 17  SGVIAARDRALSLAALKPLIDRAFRVGDEVALVI--NSPGGSPAQSQLIHDYIRIQADRR 74

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
           +K VIT V ++AAS GY I+ A + I    TSLVGSIGV+         LD+LGV  + V
Sbjct: 75  KKAVITFVEDVAASGGYWIALAGDSIRVLPTSLVGSIGVVSAGFGFVEALDRLGVERRLV 134

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR---NIPYDKTLVLSDGRI 212
            +   K    PFS    +  + +  +    +  F+  V   R        +   L  G +
Sbjct: 135 AAGRNKVRLDPFSPRKDEDTEWLTGLQAQLHERFIEHVRSRRAAQGTRLPEGGELFTGEV 194

Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
           W G EA    L D         +      VD+   ++++  P + +    L     +  L
Sbjct: 195 WLGREAIAHRLADQ--------EDSLGAYVDREKIRLREIAPRRMFSLRGLIGGLAAETL 246

Query: 273 EDTIPLMKQTKVQG 286
                 ++   ++ 
Sbjct: 247 GALEARIEDRALRA 260


>gi|327394039|dbj|BAK11461.1| predicted protease SohB [Pantoea ananatis AJ13355]
          Length = 348

 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 102/229 (44%), Gaps = 10/229 (4%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYAG 83
             +E   P +  +   G I+ S+  ++ +       ++       +++ L SPGG  +  
Sbjct: 93  GSLETARPTLYVLDFNGSIDASE--VKSLREEVSAVLAVAQPGDEVLLRLESPGGMVHGY 150

Query: 84  EAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                 +Q++++    +   V ++AAS GY+++C ++ IVAA  +++GSIGV+ Q P   
Sbjct: 151 GLAASQLQRLRDAGLTLTAAVDKVAASGGYMMACVASQIVAAPFAVIGSIGVVAQIPNFN 210

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L +  + ++   +   K   + F E   +  +  Q  ++ ++  F + V E R  P  
Sbjct: 211 RLLKRNDIDVELHTAGQYKRTLTLFGENTEEGREKFQQDLNETHLLFKQFVHEMR--PSL 268

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
               ++ G  W G +A  +GLID +   +++            +  ++ 
Sbjct: 269 DIDRVATGEHWYGRQALTLGLIDRISTSDDLIIQHMDKFTVLGVNYVRR 317


>gi|77164361|ref|YP_342886.1| putative periplasmic protease [Nitrosococcus oceani ATCC 19707]
 gi|254433532|ref|ZP_05047040.1| peptidase family S49 N-terminal domain protein [Nitrosococcus
           oceani AFC27]
 gi|76882675|gb|ABA57356.1| inner membrane peptidase, Serine peptidase, MEROPS family S49
           [Nitrosococcus oceani ATCC 19707]
 gi|207089865|gb|EDZ67136.1| peptidase family S49 N-terminal domain protein [Nitrosococcus
           oceani AFC27]
          Length = 325

 Score = 80.8 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 104/251 (41%), Gaps = 16/251 (6%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSA 80
              + +  +  V  +   G I  +      +E+   +   + +D    +++ L S GG  
Sbjct: 77  AHKNKQKYTKRVFVLDFHGDIRATAVASLREEITAVLSVATPEDE---ILLRLESGGGLV 133

Query: 81  YAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +        +++++ ++   I  V ++AAS GY+++C  N I+AA  +++GSIG L Q P
Sbjct: 134 HEYGLAASQLERIRKKQIPLIIAVDKIAASGGYMMACVGNRIIAAPFAIIGSIGALMQVP 193

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                LDK G+  + +K+  +K   + F     +  ++ +  V+  +  F   V+  R  
Sbjct: 194 NFHRLLDKHGIDFEQIKAGELKRTVTLFGINTDQDRELAKKQVEDIHQLFKEFVARYR-- 251

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           P       + G+ W   +AKK+ LID +   ++                   +   K + 
Sbjct: 252 PDMDLSQTATGQHWHAIQAKKLNLIDDLETSDDYLAEACKTANLYK----VTYTVKKTFA 307

Query: 260 FCDLKNLSISS 270
              L     +S
Sbjct: 308 ERFLARTQAAS 318


>gi|284007501|emb|CBA72986.1| probable protease [Arsenophonus nasoniae]
          Length = 348

 Score = 80.8 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 105/244 (43%), Gaps = 14/244 (5%)

Query: 29  SHVEDNSPHVARIAIRG-----QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                  P +  I  +G     ++   +E I  I  I+ +     +++ L SPGG  +  
Sbjct: 93  GQTTLKKPCLFVIDFKGSMNALEVNALREEITAILSIADNKD--EVLLRLESPGGVVHGY 150

Query: 84  EAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                 + +++ +   +I  V ++AAS GY+++C ++ IVAA  +++GSIGV+ Q P   
Sbjct: 151 GLAASQLNRLREKGLKLIVSVDKVAASGGYMMACVADHIVAAPFAIIGSIGVVAQVPNFH 210

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L K  + ++   +   K   +   E   +  +     ++ ++  F   V + R  P  
Sbjct: 211 RLLKKKDIDVELHTAGEYKRTLTLLGENTEQGRKKFVQDLNEAHQLFKDFVHQKR--PAL 268

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               ++ G  W G +AK+ GLID +G  +++  +               + P K +    
Sbjct: 269 DINAVATGEHWYGVQAKEKGLIDEIGVSDDIIINQIE----AREIIAVTYTPAKRFVDRL 324

Query: 263 LKNL 266
           + ++
Sbjct: 325 MGSM 328


>gi|119469274|ref|ZP_01612213.1| predicted inner membrane peptidase [Alteromonadales bacterium TW-7]
 gi|119447138|gb|EAW28407.1| predicted inner membrane peptidase [Alteromonadales bacterium TW-7]
          Length = 313

 Score = 80.8 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 100/214 (46%), Gaps = 7/214 (3%)

Query: 28  SSHVEDNSPHVARIAIRGQIE--DSQELIERIERISR--DDSATALIVSLSSPGGSAYAG 83
            S  E + P +  +   G ++  + + L E I  I    D     +++ L S GG  +  
Sbjct: 56  KSDKEGSKPRLYVVDFIGSMDAHEVESLREEITAIISIADPKKDKVLIRLESGGGVVHGY 115

Query: 84  EAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                 +Q++K+    ++  + ++AAS GY+++C ++ I+AA  ++VGSIGV+ Q P   
Sbjct: 116 GLAASQLQRIKSAGIPLSVSIDKVAASGGYMMACVADEILAAPFAIVGSIGVIAQIPNFN 175

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L K  V  + + +   K   + F E   KA +  +D ++ ++  F   VS  R  P  
Sbjct: 176 KILKKNDVEFEQITAGEFKRTLTLFGENTDKAREKFRDEIEQTHDLFKTFVSSQR--PSL 233

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
               ++ G  W   +A + GL+DV+   ++    
Sbjct: 234 NIDQVATGEHWFATQAIEKGLVDVIKTSDDALLE 267


>gi|225630471|ref|YP_002727262.1| minor capsid protein C, putative [Wolbachia sp. wRi]
 gi|225592452|gb|ACN95471.1| minor capsid protein C, putative [Wolbachia sp. wRi]
          Length = 345

 Score = 80.8 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 89/181 (49%), Gaps = 1/181 (0%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           +   +++ E IER   D S   +++ + SPGG       +   I + + +K +I   ++ 
Sbjct: 64  MTSYEKIHEEIERALEDKSIETILLDIDSPGGEVNGVFDLADFIYESRAKKRIIAIANDD 123

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           A SA Y I+ ++  I    TS VGSIGV+  +     F +K G+   +V +   K + +P
Sbjct: 124 AYSAAYAIASSAEKIFLTRTSGVGSIGVIASHIDQSGFDEKQGIKYTTVFAGSRKNDLNP 183

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
              +  ++++ ++  V+  Y   V L++ +R++  +       G  + G +A ++GL D 
Sbjct: 184 HEPITSESLENLKSEVNRLYGMLVELIARNRSLSVEAIKNTEAGLYF-GEKAIEMGLADG 242

Query: 227 V 227
           +
Sbjct: 243 M 243


>gi|221134638|ref|ZP_03560941.1| putative periplasmic protease [Glaciecola sp. HTCC2999]
          Length = 371

 Score = 80.8 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 95/216 (43%), Gaps = 12/216 (5%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGS 79
           S  S      P +  I   G ++        +E+   +      D    ++V++ S GG 
Sbjct: 113 SSGSVESAQKPRLFVIDFNGSVDAHEVDNFREEITAVLLAAKSSDE---VLVNVESGGGV 169

Query: 80  AYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
            +        ++++K +   +   V ++AAS GY+++C ++ +V A  +++GSIGV+ Q 
Sbjct: 170 VHGYGLAASQLERIKAKGLKLTICVDKVAASGGYMMACVADKLVCANFAIIGSIGVIAQM 229

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
           P     L K  +  +   +   K   + F E N +     +  ++  +  F   V+ +R 
Sbjct: 230 PNFNKLLKKNDIEFEQHTAGDFKRTLTVFGENNDEGRAKFKAELEEVHVMFKDFVTRNR- 288

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
            P      ++ G  W G +A ++GL+D +   ++V 
Sbjct: 289 -PTLDISKVATGEYWFGMQALELGLVDELSTSDDVL 323


>gi|296106434|ref|YP_003618134.1| Periplasmic protease [Legionella pneumophila 2300/99 Alcoy]
 gi|295648335|gb|ADG24182.1| Periplasmic protease [Legionella pneumophila 2300/99 Alcoy]
          Length = 311

 Score = 80.8 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 99/211 (46%), Gaps = 11/211 (5%)

Query: 36  PHVARIAIRGQIEDSQELIERIERISRD-----DSATALIVSLSSPGGSAYAGEAIFRAI 90
           P +  I   G I+ +Q  +E++                ++V L SPGG+          +
Sbjct: 75  PVLYVIDFSGDIKATQ--VEQLRDEVTSVLSIAKPEDEVLVRLESPGGAVNGYGLAASQL 132

Query: 91  QKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           Q+++++K      + +MAAS GYL++C +N I+AA  +++GSIGV+ Q P    +L K  
Sbjct: 133 QRIRDKKIPLTVSIDKMAASGGYLMACVANKIIAAPFAIIGSIGVVAQIPNFHRWLKKNN 192

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           + ++ + +   K   + F+E   K  +  Q+ ++  +  F   V ++R         ++ 
Sbjct: 193 IDVELLTAGEYKRTLTLFAENTEKGRKKFQEDLEKIHTAFREYVLKNR--SQLDIDKVAT 250

Query: 210 GRIWTGAEAKKVGLIDVVGGQEE-VWQSLYA 239
           G  W   +A  + L+D +   +E + + +  
Sbjct: 251 GEHWIAKDAFDLRLVDKLATSDEYLIEKMAE 281


>gi|148360499|ref|YP_001251706.1| signal peptide peptidase SppA [Legionella pneumophila str. Corby]
 gi|148282272|gb|ABQ56360.1| signal peptide peptidase SppA (protease IV) [Legionella pneumophila
           str. Corby]
          Length = 311

 Score = 80.8 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 99/211 (46%), Gaps = 11/211 (5%)

Query: 36  PHVARIAIRGQIEDSQELIERIERISRD-----DSATALIVSLSSPGGSAYAGEAIFRAI 90
           P +  I   G I+ +Q  +E++                ++V L SPGG+          +
Sbjct: 75  PVLYVIDFSGDIKATQ--VEQLRDEVTSVLSIAKPEDEVLVRLESPGGAVNGYGLAASQL 132

Query: 91  QKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           Q+++++K      + +MAAS GYL++C +N I+AA  +++GSIGV+ Q P    +L K  
Sbjct: 133 QRIRDKKIPLTVSIDKMAASGGYLMACVANKIIAAPFAIIGSIGVVAQIPNFHRWLKKNN 192

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           + ++ + +   K   + F+E   K  +  Q+ ++  +  F   V ++R         ++ 
Sbjct: 193 IDVELLTAGEYKRTLTLFAENTEKGRKKFQEDLEKIHTAFREYVLKNR--SQLDIDKVAT 250

Query: 210 GRIWTGAEAKKVGLIDVVGGQEE-VWQSLYA 239
           G  W   +A  + L+D +   +E + + +  
Sbjct: 251 GEHWIAKDAFDLRLVDKLATSDEYLIEKMAE 281


>gi|330828722|ref|YP_004391674.1| putative protease sohB [Aeromonas veronii B565]
 gi|328803858|gb|AEB49057.1| Probable protease sohB [Aeromonas veronii B565]
          Length = 335

 Score = 80.8 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 108/259 (41%), Gaps = 14/259 (5%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA----TALIVSLSSPGGSAYAGEA 85
              D    +  +   G   D++E+    E +S           +++ L S GG  +    
Sbjct: 83  KAGDERSRLFVLDFNGS-MDAKEVASLREEVSAVIGVAQPGDEVLLRLESGGGVVHGYGL 141

Query: 86  IFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
               +Q++++R   +T  + ++AAS GY+++C ++ I+AA  ++VGSIGV+ Q P     
Sbjct: 142 AASQLQRLRDRDIKLTVAIDKVAASGGYMMACVADKILAAPFAIVGSIGVIAQLPNFNKL 201

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K  +  +   +   K   + F E +    +  ++ + + +  F   V+E R  P    
Sbjct: 202 LKKHDIEFEMHTAGQYKRTITMFGENDDLGREKFREELAAIHERFKAFVAEHR--PQLDI 259

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             ++ G  W  ++AK +GL+D +   ++       L    S  K+   +  K        
Sbjct: 260 DQVTTGEHWLASQAKGLGLVDTLCTSDDY------LLAQASHHKVIGISYRKPKSLTQKL 313

Query: 265 NLSISSLLEDTIPLMKQTK 283
               +  LE  +  + Q  
Sbjct: 314 GQQGAQALEAGLGRLWQQS 332


>gi|54293830|ref|YP_126245.1| putative periplasmic protease [Legionella pneumophila str. Lens]
 gi|53753662|emb|CAH15120.1| hypothetical protein lpl0886 [Legionella pneumophila str. Lens]
          Length = 312

 Score = 80.4 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 99/211 (46%), Gaps = 11/211 (5%)

Query: 36  PHVARIAIRGQIEDSQELIERIERISRD-----DSATALIVSLSSPGGSAYAGEAIFRAI 90
           P +  I   G I+ +Q  +E++                ++V L SPGG+          +
Sbjct: 76  PVLYVIDFSGDIKATQ--VEQLRDEVTSVLSIAKPEDEVLVRLESPGGAVNGYGLAASQL 133

Query: 91  QKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           Q+++++K      + +MAAS GYL++C +N I+AA  +++GSIGV+ Q P    +L K  
Sbjct: 134 QRIRDKKIPLTVSIDKMAASGGYLMACVANKIIAAPFAIIGSIGVVAQIPNFHRWLKKNN 193

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           + ++ + +   K   + F+E   K  +  Q+ ++  +  F   V ++R         ++ 
Sbjct: 194 IDVELLTAGEYKRTLTLFAENTEKGRKKFQEDLEKIHTAFREYVLKNR--SQLDIDKVAT 251

Query: 210 GRIWTGAEAKKVGLIDVVGGQEE-VWQSLYA 239
           G  W   +A  + L+D +   +E + + +  
Sbjct: 252 GEHWIAKDAFDLRLVDKLATSDEYLIEKMAE 282


>gi|26990627|ref|NP_746052.1| putative periplasmic protease [Pseudomonas putida KT2440]
 gi|24985612|gb|AAN69516.1|AE016585_8 sohB protein, peptidase U7 family [Pseudomonas putida KT2440]
          Length = 339

 Score = 80.4 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 107/266 (40%), Gaps = 20/266 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAGE 84
                ++   V  +   G I+ S  + L   I  +    +A   +++ L S GG  ++  
Sbjct: 84  KKGKAEDKSRVFVLDFDGDIKASATESLRNEITALLTLATARDEVVLRLESGGGLVHSYG 143

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                + +++     +T    ++AAS GY+++C    IV+A  +++GSIGV+ Q P V  
Sbjct: 144 LAASQLARIRQAGIPLTVCIDKVAASGGYMMACIGEKIVSAPFAVLGSIGVVAQLPNVNR 203

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K  +  + + +   K   + F E   K  +  Q+ +D ++  F   VS  R  P   
Sbjct: 204 LLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKYQEDLDITHQLFKDFVSRYR--PQLH 261

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G +W G  A    L+D +   +E             +     +   K+      
Sbjct: 262 IDEVATGEVWLGVAALNRKLVDELQTSDEYLSERARNANLFHLH----YAERKSLQERI- 316

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289
             ++ S  +E+         V GLW+
Sbjct: 317 -GMAASGTVENA--------VVGLWS 333


>gi|328849884|gb|EGF99057.1| putative protease IV sppA [Melampsora larici-populina 98AG31]
          Length = 842

 Score = 80.4 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 99/189 (52%), Gaps = 9/189 (4%)

Query: 37  HVARIAIRGQIEDSQE-----LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
           +V  + + G I D  E     +++ ++  + DDS  A+++ + S GG     + I+ A++
Sbjct: 396 NVGVVYVLGTIGDVGEFGTGAIVKGLKEAAEDDSIGAVVLRIDSGGGGVVESDTIWGAVK 455

Query: 92  KVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP-FLDKLG 149
           ++++R KPVI      AAS GYLI+  ++ I A  +++ GSIGV    P + P F ++L 
Sbjct: 456 ELRSRGKPVIASFGNAAASGGYLIATHADSIFAMPSTITGSIGVASLRPTIMPSFFERLK 515

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           ++ +S  +         + E+  +A+   +  +D +Y  F   V + R I  +    L+ 
Sbjct: 516 LTTQSFFTGSQALSI--YHELGDEAMSRHKTHIDLAYADFKGRVCDGRQISTELIEKLAG 573

Query: 210 GRIWTGAEA 218
           GR++TG +A
Sbjct: 574 GRVYTGLKA 582


>gi|224535172|ref|ZP_03675711.1| hypothetical protein BACCELL_00033 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224523222|gb|EEF92327.1| hypothetical protein BACCELL_00033 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 292

 Score = 80.4 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 92/226 (40%), Gaps = 6/226 (2%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL-IER-IERISRDDSATALIVSLSSPGGSAYAGEAI 86
                    V  +   G +   +   +E+ I +   +     +++ ++ PGG     + +
Sbjct: 69  EDASLPENSVVILTCDGVLYSWETYRLEQFIAKALANPKIAGIVLFVNGPGGMITRVDLL 128

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYVKPFL 145
            R I++  + KP+   +  + ASA +    A     V++    +GS G+++ Y   K + 
Sbjct: 129 ERMIRE--SSKPIAAYITGVCASAHFWFVSACGRKFVSSPMDEIGSCGIIYTYQSFKKYY 186

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM-MQDVVDSSYHWFVRLVSESRNIPYDKT 204
           ++LGV +K +       +     ++  K     +++ +   ++ F + V+ +  I YD+ 
Sbjct: 187 EELGVELKDIYPDSADLKNKMIRDMEEKQDDSLIKEKLSFYHNLFAQAVARNLGIKYDRN 246

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
             L  G+ +    A   G +D  G  E+    + +    +   +I 
Sbjct: 247 DPLFRGQTYFADVALANGYVDAYGTLEDAIVWVLSQATLKRANEII 292


>gi|148547143|ref|YP_001267245.1| putative periplasmic protease [Pseudomonas putida F1]
 gi|148511201|gb|ABQ78061.1| Peptidase S49, N-terminal domain protein [Pseudomonas putida F1]
          Length = 339

 Score = 80.4 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 107/266 (40%), Gaps = 20/266 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAGE 84
                ++   V  +   G I+ S  + L   I  +    +A   +++ L S GG  ++  
Sbjct: 84  KKGKAEDKSRVFVLDFDGDIKASATESLRNEITALLTLATARDEVVLRLESGGGLVHSYG 143

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                + +++     +T    ++AAS GY+++C    IV+A  +++GSIGV+ Q P V  
Sbjct: 144 LAASQLARIRQAGIPLTVCIDKVAASGGYMMACIGEKIVSAPFAVLGSIGVVAQLPNVNR 203

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K  +  + + +   K   + F E   K  +  Q+ +D ++  F   VS  R  P   
Sbjct: 204 LLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLDITHQLFKDFVSRYR--PQLH 261

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G +W G  A    L+D +   +E             +     +   K+      
Sbjct: 262 IDEVATGEVWLGVAALNRKLVDELQTSDEYLSERARNANLFHLH----YAERKSLQERI- 316

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289
             ++ S  +E+         V GLW+
Sbjct: 317 -GMAASGTVENA--------VVGLWS 333


>gi|58698702|ref|ZP_00373591.1| hypothetical protein WwAna1181 [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534788|gb|EAL58898.1| hypothetical protein WwAna1181 [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 345

 Score = 80.0 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 89/181 (49%), Gaps = 1/181 (0%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           +   +++ E IER   D S   +++ + SPGG       +   I + + +K +I   ++ 
Sbjct: 64  MTSYEKIHEEIERALEDKSIETILLDIDSPGGEVNGVFDLADFIYESRAKKRIIAIANDD 123

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           A SA Y I+ ++  I    TS VGSIG++  +     F +K G+   +V +   K + +P
Sbjct: 124 AYSAAYAIASSAEKIFLTRTSGVGSIGIIASHIDQSGFDEKQGIKYTTVFAGSRKNDLNP 183

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
              +  ++++ ++  V+  Y   V L++ +R++  +       G  + G +A ++GL D 
Sbjct: 184 HEPITSESLENLKSEVNRLYGMLVELIARNRSLSVEAIKNTEAGLYF-GEKAIEMGLADG 242

Query: 227 V 227
           +
Sbjct: 243 M 243


>gi|330994906|ref|ZP_08318828.1| Head-tail preconnector protein GP5 [Gluconacetobacter sp. SXCC-1]
 gi|329758167|gb|EGG74689.1| Head-tail preconnector protein GP5 [Gluconacetobacter sp. SXCC-1]
          Length = 275

 Score = 80.0 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 98/215 (45%), Gaps = 14/215 (6%)

Query: 38  VARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           VA I + G +   +             ++    ++   + S  A ++ + SPGG+     
Sbjct: 59  VAIIPVSGVLLPGESPGWWWSGATFYEDINVAFQQAIDEPSIKATVLLVDSPGGTVAGCF 118

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +   I + +  KP++  V+E A SA Y ++ +++ I+   T  VGSIGV+  +  +   
Sbjct: 119 DLADRIYEGRGAKPIVAIVNESAYSAAYALASSADTIIVPRTGGVGSIGVVGMHVDITGA 178

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L++ G+ + + +    K +  P + ++ +A +  Q  +D+    FV  V+ +R+IP D+ 
Sbjct: 179 LEQAGIKVTTFQFGDQKTDSYPTTTMSEEAAKRFQADIDAMGELFVATVARNRDIPADRV 238

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
                G  + G      GL D V G E  ++ L  
Sbjct: 239 RATQAGT-FLGQRGIDAGLADAVMGAEAAFRELLD 272


>gi|313498180|gb|ADR59546.1| Putative periplasmic protease [Pseudomonas putida BIRD-1]
          Length = 339

 Score = 80.0 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 107/266 (40%), Gaps = 20/266 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAGE 84
                ++   V  +   G I+ S  + L   I  +    +A   +++ L S GG  ++  
Sbjct: 84  KKGKAEDKSRVFVLDFDGDIKASATESLRNEITALLTLATARDEVVLRLESGGGLVHSYG 143

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                + +++     +T    ++AAS GY+++C    IV+A  +++GSIGV+ Q P V  
Sbjct: 144 LAASQLARIRQAGIPLTVCIDKVAASGGYMMACIGEKIVSAPFAVLGSIGVVAQLPNVNR 203

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K  +  + + +   K   + F E   K  +  Q+ +D ++  F   VS  R  P   
Sbjct: 204 LLKKHDIDFEVLTAGEYKRTLTIFGENTEKGREKFQEDLDITHQLFKDFVSRYR--PQLH 261

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G +W G  A    L+D +   +E             +     +   K+      
Sbjct: 262 IDEVATGEVWLGVAALNRKLVDELQTSDEYLSERARNANLFHLH----YAERKSLQERI- 316

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289
             ++ S  +E+         V GLW+
Sbjct: 317 -GMAASGTVENA--------VVGLWS 333


>gi|222825130|dbj|BAH22287.1| putative minor capsid protein c [Wolbachia endosymbiont of Cadra
           cautella]
          Length = 335

 Score = 80.0 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 101/229 (44%), Gaps = 15/229 (6%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQELIERIE 58
           + +LSL     + F    H   NS     I I G              +   +++ E IE
Sbjct: 7   FELLSLQAGKQLIFKNIKHAVRNSER-GIIPIHGILTKKSETFDGLLGMTSYEKIHEEIE 65

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118
               D S   +++ + SPGG       +   I + + +K +I   ++ A SA Y I+ ++
Sbjct: 66  SALEDKSIETILLDIDSPGGEVNGVFDLADFIYESRAKKRIIAIANDDAYSAAYAIASSA 125

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
             I    TS VGSIGV+  +     F +K G+   +V +   K + +P   +  ++++ +
Sbjct: 126 EKIFLTRTSGVGSIGVIASHIDQSGFDEKQGIKYTTVFAGSRKNDLNPHEPITSESLENL 185

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
           +  V+  Y   V L++ +R++  +       G  + G +A ++GL D +
Sbjct: 186 KSEVNRLYGMLVELIARNRSLSVEAIKNTEAGLYF-GEKAIEMGLADGM 233


>gi|296536846|ref|ZP_06898893.1| serine peptidase [Roseomonas cervicalis ATCC 49957]
 gi|296262817|gb|EFH09395.1| serine peptidase [Roseomonas cervicalis ATCC 49957]
          Length = 294

 Score = 80.0 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 85/215 (39%), Gaps = 16/215 (7%)

Query: 38  VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           VA I + G              +     + + +     D  A A+++ L+S GG      
Sbjct: 74  VAVIQVEGMLVQKTGTLRPYSGMTGYDGIRQNLLTALADTQAEAIVLDLNSGGGEVSGCF 133

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +   I + +  KP+     + A SA Y ++ A + +    T  VGS+GV+         
Sbjct: 134 DLADTITQARGIKPIWGICGDCAYSAAYALASACDRVTVPRTGGVGSVGVITMMVDYSKA 193

Query: 145 LDKLGVSIKSVKSSPMK--AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
           +   G+++  V     K       ++ + P+ +Q +Q  V      FV LV+++R +  D
Sbjct: 194 ITDEGLAVHFVHYGARKAEETRQMYTGIKPELLQRVQQDVTMMGDIFVNLVAQNRRMSAD 253

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
                 +   + G      GL D V   +E +++L
Sbjct: 254 AVKA-QEADYFLGERGVAAGLADAVMAPDEAFRAL 287


>gi|145642067|ref|ZP_01797638.1| protease IV [Haemophilus influenzae R3021]
 gi|145273247|gb|EDK13122.1| protease IV [Haemophilus influenzae 22.4-21]
          Length = 295

 Score = 79.7 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 106/275 (38%), Gaps = 44/275 (16%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52
            ++ +    V L  V L V   S+SS  + +    S     + + G + D+++       
Sbjct: 14  FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTALTSEGALLLNLDGYLADNRDETLRWQD 73

Query: 53  ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93
                             ++  I++   D     L++ L+   G    A + I  AI + 
Sbjct: 74  ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISQF 133

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           KN    +    +  +   Y ++  ++ I       V   G+  +  Y K  LDKL V+  
Sbjct: 134 KNAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193

Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             +    K+   PF  ++++ +A   MQ  +   ++ +V  VSE+RNI  D+   L + +
Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDRI--LPNAK 251

Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQS 236
            +              A++ GL+  V  + ++ + 
Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKK 286


>gi|254884972|ref|ZP_05257682.1| protease [Bacteroides sp. 4_3_47FAA]
 gi|254837765|gb|EET18074.1| protease [Bacteroides sp. 4_3_47FAA]
          Length = 286

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 94/234 (40%), Gaps = 6/234 (2%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPG 77
           L  V           S  VA I + G +   +     E I + + +D    +I+ ++ PG
Sbjct: 54  LNFVGRWNLEDSGLPSDSVAVIVLEGTLYSWETFRLQEYIAQAAANDRIAGIILWINGPG 113

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA-AETSLVGSIGVLF 136
           G     +   + I +    KPV+  +    ASA + ++ A++     +    VGSIGV+ 
Sbjct: 114 GMITGLDNASKMISECP--KPVVAYIAGACASAHFWLASAADKRFLGSLMCEVGSIGVVG 171

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA-VQMMQDVVDSSYHWFVRLVSE 195
            Y   K  L K G+  + +       +     E+      +  ++ +   +  F R VSE
Sbjct: 172 TYYNAKEALKKKGIDYREIYPDSADLKNREHREIAENNNEEPYKEKLSKLHMMFCRTVSE 231

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           + +I YDK   +  G  + G EA + GL D     E   + + A  V     +I
Sbjct: 232 NLSIAYDKDSPVFRGATFMGDEAVREGLADGYNTLEGAARWILAQSVINKTNQI 285


>gi|197285195|ref|YP_002151067.1| periplasmic protease [Proteus mirabilis HI4320]
 gi|227355620|ref|ZP_03840014.1| S49 family SohB endopeptidase [Proteus mirabilis ATCC 29906]
 gi|194682682|emb|CAR42830.1| probable protease [Proteus mirabilis HI4320]
 gi|227164227|gb|EEI49120.1| S49 family SohB endopeptidase [Proteus mirabilis ATCC 29906]
          Length = 348

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 104/235 (44%), Gaps = 9/235 (3%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSA-TALIVSLSSPGGSAYA 82
           +         P +  I  +G ++  +   L E I  I     A   +++ L SPGG  + 
Sbjct: 90  AKEGRKGVVKPCLYVIDFKGSMDAHEVGALREEISAILSVAQAGDEVLLRLESPGGMVHG 149

Query: 83  GEAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + ++K++   +T  V ++AAS GY+++C ++ IVAA  +++GSIGV+ Q P +
Sbjct: 150 YGLAAAQLTRLKDKGIKLTAVVDKVAASGGYMMACVADKIVAAPFAIIGSIGVVAQIPNI 209

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L K  + ++   +   K   +   E   +  +  +  ++ ++  F   V + R  P 
Sbjct: 210 HRLLKKNDIDVELHTAGEYKRTLTLLGENTDEGREKFKQDLNETHLLFKSFVHKYR--PE 267

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
                ++ G  W G +A   GLID VG  ++    L +   D  +  ++     K
Sbjct: 268 LDIDSVATGEYWYGTDAVDKGLIDEVGVSDD---WLISRINDFEVLSVQYILKKK 319


>gi|126642480|ref|YP_001085464.1| putative periplasmic protease [Acinetobacter baumannii ATCC 17978]
          Length = 226

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 9/218 (4%)

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           V L SPGG  +        + ++++    +   V ++AAS GY+++C +N I++A  ++V
Sbjct: 2   VRLESPGGMVHGYGLAAAQLVRLRDAGFHLTICVDKVAASGGYMMACIANEIISAPFAVV 61

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GSIGV+ Q P     L +  V  +   +   K   + F E  P+     ++ +  ++  F
Sbjct: 62  GSIGVVAQVPNFNRLLKEHNVDFELYTAGQYKRTVTMFGENTPEGKAKFEEELQQTHVLF 121

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
              V + R  P      ++ G  W G +A  + L+D +   +E   +L           +
Sbjct: 122 KHFVEKYR--PQLNVDKVATGEHWYGQDALDLNLVDKLQTSDEYLLALL------PQHDV 173

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
              N  K     +   L  + + +  IP +       L
Sbjct: 174 YVINTRKKATLGEKLGLQAAQMADSLIPAVMNKVADTL 211


>gi|192359025|ref|YP_001982509.1| putative periplasmic protease [Cellvibrio japonicus Ueda107]
 gi|190685190|gb|ACE82868.1| possible protease SohB [Cellvibrio japonicus Ueda107]
          Length = 364

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 102/264 (38%), Gaps = 30/264 (11%)

Query: 35  SPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
              V  +   G I+ S      +E+   +           ++V + S GG  +       
Sbjct: 114 KKRVFVLDFYGDIKASACDNLREEITTVLSIA---KPTDEVVVKVESGGGMVHGYGLASS 170

Query: 89  AIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            + ++ ++   +T    ++AAS GY+++C +N IVAA  ++VGSIGV+ Q P     L K
Sbjct: 171 QLARITHKHIPLTVCVDKVAASGGYMMACVANKIVAAPFAIVGSIGVIAQLPNFHKLLKK 230

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
             +  +   +   K   + F E   K      + ++ ++  F   V E R  P      +
Sbjct: 231 NDIDFEMFTAGEFKRTVTMFGENTEKGRAKFVEELEDTHVLFKEFVGEHR--PQVDIAKV 288

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G +W G  AK V LID +   +E    L +      I  ++                +
Sbjct: 289 ATGEVWFGRRAKDVNLIDELQTSDE---YLLSQVDQADIYTVE---------------FT 330

Query: 268 ISSLLEDTIPLMKQTKVQGLWAVW 291
               L + + L  Q  V  L   W
Sbjct: 331 FKKTLPEKLGLAAQGAVDRLLMTW 354


>gi|77360288|ref|YP_339863.1| putative periplasmic protease [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875199|emb|CAI86420.1| protease (may metabolize cleaved signal peptides)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 339

 Score = 79.3 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 109/253 (43%), Gaps = 13/253 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIE--DSQELIERIERISR--DDSATALIVSLSSPGGSAYAG 83
            +  ++  P +  +   G ++  + + L E I  I    D S   +++ L S GG  +  
Sbjct: 82  KNDSKEPKPRLYVVDFIGSMDAHEVESLREEITAIISIADASKDKVLIRLESGGGVVHGY 141

Query: 84  EAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                 +Q++KN    ++  + ++AAS GY+++C ++ I+AA  ++VGSIGV+ Q P   
Sbjct: 142 GLAASQLQRIKNAGIPLSVAIDKVAASGGYMMACVADEIIAAPFAIVGSIGVIAQIPNFN 201

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L K  V  + + +   K   + F E   KA +  ++ ++ ++  F   VS  R  P  
Sbjct: 202 KILKKNDVEFEQITAGEFKRTLTLFGENTDKAREKFREEIEQTHGLFKTFVSTQR--PSL 259

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               ++ G  W   +A + GL+DV+   ++           Q   +I            D
Sbjct: 260 DISSVATGEHWFATQAIEKGLVDVIKTSDDALLE------QQDECQIYKIKYKIKKGLSD 313

Query: 263 LKNLSISSLLEDT 275
              L  SS +   
Sbjct: 314 KLALGFSSAVNKA 326


>gi|59711647|ref|YP_204423.1| putative periplasmic protease [Vibrio fischeri ES114]
 gi|59479748|gb|AAW85535.1| predicted inner membrane peptidase [Vibrio fischeri ES114]
          Length = 353

 Score = 79.3 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 103/252 (40%), Gaps = 10/252 (3%)

Query: 35  SPHVARIAIRGQIEDSQELIERIERISRDDSA----TALIVSLSSPGGSAYAGEAIFRAI 90
              +  +   G I D++E+    E +S   +       +++ L S GG  +        +
Sbjct: 104 DARLFVLDFNGSI-DAKEVAALREEVSAILAVAIEGDEVLLRLESGGGMVHGYGLASSQL 162

Query: 91  QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
            +++     +   V ++AAS GY+++C    I+AA  ++VGSIGV+ Q P     L K  
Sbjct: 163 DRLRDANIKLTISVDKVAASGGYMMACIGEKIIAAPFAIVGSIGVVAQLPNFNKLLKKND 222

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +  + + +   K   + F E + KA +  Q  ++ ++  F   + E R         ++ 
Sbjct: 223 IEFEQLTAGEYKRTLTMFGENSDKAREKFQLELEETHVLFKDFIREHR--SELDLEKVAT 280

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           G  W G +A ++GLID +   ++            +I  +       +     +   S  
Sbjct: 281 GEHWFGKQALELGLIDEIQTSDDYLTKACKDREVLAIHYV--QKKKLSDKIAGIAGQSAE 338

Query: 270 SLLEDTIPLMKQ 281
           ++    I   ++
Sbjct: 339 NVFMRLISKGQR 350


>gi|160871575|ref|ZP_02061707.1| probable protease SohB [Rickettsiella grylli]
 gi|159120374|gb|EDP45712.1| probable protease SohB [Rickettsiella grylli]
          Length = 330

 Score = 79.3 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 105/252 (41%), Gaps = 16/252 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
             +       V  +  +G I+        +E+   I+  +  D    +++ L S GG   
Sbjct: 82  KKNANQLKKKVFVLNFQGDIKAHAVNNLREEITALIQVATPQDE---VVLRLESAGGMVA 138

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   +Q++KN+   +T    ++AAS GYL++C ++ ++AA  +++GSIGV+ Q P 
Sbjct: 139 PYGLAASQLQRLKNKHIPLTITIDKIAASGGYLMACVADKLLAAPFAIIGSIGVVAQLPN 198

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
              FL K  +  + + +   K   + F E   KA +  Q  ++  +H F   +  +R   
Sbjct: 199 FHRFLKKRDIDFELLTAGEYKRTLTLFGENTSKAREKTQADLEEIHHLFKSFIQSNRK-- 256

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W   +A  + L+D +   ++    L      +   +I + +       
Sbjct: 257 KIDIHEVATGAHWLAKDALALHLVDALLTSDDYLNQLAE----EDTAEIYECHYQTKKSV 312

Query: 261 CDLKNLSISSLL 272
            +     + ++L
Sbjct: 313 SEKLRGQLHAML 324


>gi|146174461|ref|XP_001019379.2| peptidase, S49 (protease IV) family protein [Tetrahymena
           thermophila]
 gi|146144797|gb|EAR99134.2| peptidase, S49 (protease IV) family protein [Tetrahymena
           thermophila SB210]
          Length = 255

 Score = 79.3 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 105/220 (47%), Gaps = 13/220 (5%)

Query: 35  SPHVARIAIRGQIEDSQELIERIERISRDDSA---TALIVSLSSPGGSAYAGEAIFRAIQ 91
            P V  + I GQI + + +IE +E+  +D       AL V ++SPGGS    + +   I 
Sbjct: 10  KPTVPVVTINGQITE-KSVIE-LEKNLKDIRVSTAKALAVVVNSPGGSPTQSKKMVDLIH 67

Query: 92  KVKNRKP--VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
              +     V T   ++AASAG+ +  + + + A + S +GSIG +  +  VK  +   G
Sbjct: 68  NFAHDNHLTVYTFAEDLAASAGFQVLISGDKVFADQQSTLGSIGSITNFMNVKELILNQG 127

Query: 150 VSIKSVKSSPMK-AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-- 206
           + I+SV ++P      S F +V  +   + ++++ S +  F+ LV E R           
Sbjct: 128 IEIRSVTTNPASVTNQSMFKDVPEELRHVYENMLQSQHKKFIDLVEEQRGSKIKVPKEKR 187

Query: 207 ---LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
              L +G ++ G +A + GLID +G  ++V +  +     
Sbjct: 188 GSLLYNGDVFNGKQALEYGLIDSIGRVQDVMKEEFPKADV 227


>gi|320654748|gb|EFX22727.1| putative head protein/prohead protease [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
          Length = 184

 Score = 79.3 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 1/180 (0%)

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118
           +   D     +++ + SPGG A         I +++ +KPV    ++ A SA  L++ A 
Sbjct: 1   QAMADSQVRGVLLDIDSPGGQAAGAFDCADMIYRLRQQKPVWALCNDTACSAAMLLASAC 60

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           +  +  +TS +GSIGV+  +      L + GV I  + S   K + + F  +  +  Q M
Sbjct: 61  SRRLVTQTSRIGSIGVMMSHVSYAGHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDM 120

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           Q  +D++   F   V+    +  D     ++  ++ G    + GL D +    +    + 
Sbjct: 121 QQRIDAARRMFAEKVAMYTGLSVDAV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 179


>gi|152995733|ref|YP_001340568.1| putative periplasmic protease [Marinomonas sp. MWYL1]
 gi|150836657|gb|ABR70633.1| Peptidase S49 domain protein [Marinomonas sp. MWYL1]
          Length = 347

 Score = 78.9 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 105/256 (41%), Gaps = 18/256 (7%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSA 80
                E     +  +   G I+ S      +E+   +      D    ++V L S GG  
Sbjct: 89  PKETDEVVKKRLYVLDFDGDIKASAVETMRKEITAILSVAKPQDE---VVVRLESGGGVV 145

Query: 81  YAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +        +Q+++    P+   V ++AAS GY+++C ++ I+AA  +++GSIGV+ Q P
Sbjct: 146 HGYGLAASQLQRIREANIPLTICVDKVAASGGYMMACVADKIIAAPFAILGSIGVVAQVP 205

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            +   LDK  + ++   +   K   +   E   +  +  +  ++ ++  F R VS  R  
Sbjct: 206 NLHRLLDKSLIDVELHTAGKYKRTLTMLGENTDEGREKFKQDLEDTHGLFKRFVSSQR-- 263

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           P      ++ G  W G+EA +  LIDVV   +        L       ++      +   
Sbjct: 264 PQLDIEDIATGDTWYGSEAIENKLIDVVMTSD------AYLVSHYENAEVIQVTYKQPKG 317

Query: 260 FCDLKNLSISSLLEDT 275
             +   LS  S LE  
Sbjct: 318 MAERLGLSFFSALEQK 333


>gi|295698501|ref|YP_003603156.1| probable protease SohB [Candidatus Riesia pediculicola USDA]
 gi|291157227|gb|ADD79672.1| probable protease SohB [Candidatus Riesia pediculicola USDA]
          Length = 326

 Score = 78.9 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 95/209 (45%), Gaps = 6/209 (2%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAAS 109
           +E+   +    ++D    +++ L S GG+          + ++K +K      +  +AAS
Sbjct: 115 EEITAILSVADKNDE---VLLILESSGGTVNGYGLAAAQLMRLKEKKIKLTVSIDRVAAS 171

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
            GY+++C +N I+AA  S+VGSIGV+ Q P    FL K  + ++   +   K   +   E
Sbjct: 172 GGYMMACTANHIIAAPLSIVGSIGVVGQIPNFHRFLKKQDIDVELHTAGEYKRTLTLLGE 231

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
                 +     +++++  F   V ++R  P     ++S+G  W G +AK+ GLID +G 
Sbjct: 232 NTESGRKKFIQDLNNTHLLFKAFVQKNR--PNLNIDLVSNGEYWYGIQAKENGLIDEIGT 289

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            +              I+ I +    K +
Sbjct: 290 SDGYILKNIKEKEVIKIKYIINQGIFKKF 318


>gi|170722382|ref|YP_001750070.1| putative periplasmic protease [Pseudomonas putida W619]
 gi|169760385|gb|ACA73701.1| Peptidase S49 domain protein [Pseudomonas putida W619]
          Length = 339

 Score = 78.9 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 104/266 (39%), Gaps = 20/266 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAGE 84
                +    V  +   G I+ S  + L   I  +    +    +++ L S GG  ++  
Sbjct: 84  KKGKVEEKGRVFVLDFDGDIKASATESLRNEITALLTLATPRDEVVLRLESGGGLVHSYG 143

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                + +++     +T    ++AAS GY+++C    IV+A  +++GSIGV+ Q P V  
Sbjct: 144 LAASQLARIRQAGIPLTVCIDKVAASGGYMMACIGEKIVSAPFAVLGSIGVVAQLPNVNR 203

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K  +  + + +   K   + F E   K  +  Q+ +D ++  F   V+  R  P   
Sbjct: 204 LLKKHNIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLDITHQLFKDFVARYR--PQLH 261

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G +W G  A    L+D +   +E                   +   K+      
Sbjct: 262 IDEVATGEVWLGVAALNRKLVDQLQTSDEYLSERARNASLFH----VHYAERKSLQERI- 316

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289
             ++ S  +E+         V GLW+
Sbjct: 317 -GMAASGAVENA--------VVGLWS 333


>gi|104781391|ref|YP_607889.1| putative periplasmic protease [Pseudomonas entomophila L48]
 gi|95110378|emb|CAK15086.1| putative peptidase, S49 family [Pseudomonas entomophila L48]
          Length = 338

 Score = 78.9 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 104/257 (40%), Gaps = 20/257 (7%)

Query: 37  HVARIAIRGQIEDS--QELIERIERISR-DDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
            V  +   G I+ S  + L   I  +         +++ L S GG  ++       + ++
Sbjct: 92  RVFVLDFDGDIKASATESLRNEITALLTLATPQDEVVLRLESGGGLVHSYGLAASQLARI 151

Query: 94  KNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           +         + ++AAS GY+++C    IV+A  +++GSIGV+ Q P V   L K  +  
Sbjct: 152 REAGVPLTICIDKVAASGGYMMACIGEKIVSAPFAVLGSIGVVAQMPNVNRLLKKHDIDF 211

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
           + + +   K   + F E   K  +  Q+ +D ++  F   V+  R  P      ++ G +
Sbjct: 212 EVLTAGEYKRTLTVFGENTDKGREKFQEDLDITHQLFKDFVARYR--PQLHIDEVATGEV 269

Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
           W G  A    L+D +G  +E             +R        +     +   ++ S  +
Sbjct: 270 WLGIAALNRQLVDELGTSDEYLSQRAREANLFHLRF------AERKTLQERIGVAASGAV 323

Query: 273 EDTIPLMKQTKVQGLWA 289
           E+T+         GLW+
Sbjct: 324 ENTL--------VGLWS 332


>gi|197335839|ref|YP_002155843.1| putative protease SohB [Vibrio fischeri MJ11]
 gi|197317329|gb|ACH66776.1| putative protease SohB [Vibrio fischeri MJ11]
          Length = 353

 Score = 78.5 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 103/252 (40%), Gaps = 10/252 (3%)

Query: 35  SPHVARIAIRGQIEDSQELIERIERISRDDSA----TALIVSLSSPGGSAYAGEAIFRAI 90
              +  +   G I D++E+    E +S   +       +++ L S GG  +        +
Sbjct: 104 DARLFVLDFNGSI-DAKEVAALREEVSAILAVAIEGDEVLLRLESGGGMVHGYGLASSQL 162

Query: 91  QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
            +++     +   V ++AAS GY+++C    I+AA  ++VGSIGV+ Q P     L K  
Sbjct: 163 DRLRDANIKLTISVDKVAASGGYMMACIGEKIIAAPFAIVGSIGVVAQLPNFNKLLKKND 222

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +  + + +   K   + F E + KA +  Q  ++ ++  F   + E R         ++ 
Sbjct: 223 IEFEQLTAGEYKRTLTMFGENSDKAREKFQLELEETHVLFKDFICEHR--SELDLEKVAT 280

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           G  W G +A ++GLID +   ++            +I  +       +     +   S  
Sbjct: 281 GEHWFGKQALELGLIDDIQTSDDYLTKACKDREVLAIHYV--QKKKLSDKIAGIAGQSAE 338

Query: 270 SLLEDTIPLMKQ 281
           ++    I   ++
Sbjct: 339 NVFMRLISKGQR 350


>gi|92114061|ref|YP_573989.1| putative periplasmic protease [Chromohalobacter salexigens DSM
           3043]
 gi|91797151|gb|ABE59290.1| inner membrane peptidase, Serine peptidase, MEROPS family S49
           [Chromohalobacter salexigens DSM 3043]
          Length = 349

 Score = 78.5 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/272 (20%), Positives = 115/272 (42%), Gaps = 21/272 (7%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQ--ELIER----IERISRDDSATALIVSLSSPGGSAY 81
               E   P V  +   G ++ S+  +L E+    +  +  DD    ++V L+S GG  +
Sbjct: 90  GEAQEAARPRVWVLDFDGDLKASRTPQLAEQVSLLLGELQDDDE---VVVRLTSGGGLVH 146

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           A       + ++++    +T    ++AAS GY+++C ++ ++AA  +++GSIGV+ Q P 
Sbjct: 147 AYGLASAQLDRLRDAGVRLTVCVDKVAASGGYMMACCAHRLIAAPFAVIGSIGVVAQVPN 206

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           V   L K  + ++ + +   K   +   E   +      + +  ++  F R V E R  P
Sbjct: 207 VHRLLKKHDIDVELLTAGRYKRTLTVLGENTEEGRAKFLEDLRETHDLFKRYVGERR--P 264

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G IW G +A   GLID V   +    +            ++    P++   
Sbjct: 265 ALDIEKVATGEIWYGRQALDDGLIDEVNTSDGYLAARMEQARV-----LQVVLEPRHSLM 319

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
             +   +   +   +  +M++ +  G    W 
Sbjct: 320 QRIGVGASQGIERLSDRVMERLEESG----WQ 347


>gi|325272247|ref|ZP_08138665.1| putative inner membrane peptidase [Pseudomonas sp. TJI-51]
 gi|324102619|gb|EGC00048.1| putative inner membrane peptidase [Pseudomonas sp. TJI-51]
          Length = 341

 Score = 78.5 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 108/262 (41%), Gaps = 20/262 (7%)

Query: 32  EDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAGEAIFR 88
            D    V  +   G I+ S  + L   I  +    +A   +++ L S GG  ++      
Sbjct: 90  ADEQGRVFVLDFDGDIKASATESLRNEITALLTLATARDEVVLRLESGGGLVHSYGLAAS 149

Query: 89  AIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            + +++     +T    ++AAS GY+++C  + IV+A  +++GSIGV+ Q P V   L K
Sbjct: 150 QLARIRQAGIPLTVCIDKVAASGGYMMACIGDKIVSAPFAVLGSIGVVAQLPNVNRLLKK 209

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
             +  + + +   K   + F E   K  +  Q+ +D ++  F   V+  R  P      +
Sbjct: 210 HDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLDITHQLFKDFVARYR--PQLHIDEV 267

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G +W G  A    L+D +   +E             +     +   K+        ++
Sbjct: 268 ATGEVWLGVAALNRQLVDTLQTSDEYLSERARNANLFHLH----YAERKSLQERI--GVA 321

Query: 268 ISSLLEDTIPLMKQTKVQGLWA 289
            S  +E+T+         GLW+
Sbjct: 322 ASGAVENTL--------VGLWS 335


>gi|254521421|ref|ZP_05133476.1| peptidase S49 [Stenotrophomonas sp. SKA14]
 gi|219719012|gb|EED37537.1| peptidase S49 [Stenotrophomonas sp. SKA14]
          Length = 434

 Score = 78.5 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 92/228 (40%), Gaps = 14/228 (6%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATAL 69
           V  S    V      +  I + G + +                + +  + +  DD+ T++
Sbjct: 47  VSGSDGQPVGVAQNLIGVINLSGAMVNRPMPGASGPGPVSYAAVRDTFDELLNDDAVTSI 106

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           I+ L +PGG A     +   I + + RKP+   V + A SAG+ +  A + I  + T  V
Sbjct: 107 ILRLDTPGGMASGCFDLVDHIFEARGRKPLYALVDDHAYSAGFALGSACDEIWISRTGGV 166

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GS+GV+  +        ++G+ +  + +   K + +P   ++ +A       ++     F
Sbjct: 167 GSVGVVRFHQDWSGNNAQIGLKVTPLFAGARKVDFNPNFPLSEEAHAEAMADLEDMRTMF 226

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           V  V+ +  +  +     ++   + G  A  VG    +G   ++   L
Sbjct: 227 VDTVARNLGMEAEAVRA-TEAACYRGQAAVAVGFATRLGTWHDLIAHL 273


>gi|330877855|gb|EGH12004.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 196

 Score = 78.5 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 8/141 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61
             K        V + V    +       S H A I ++G I D     ++ ++  +++  
Sbjct: 49  FFKLLTFAFLFVAVVVPMLDFEGGTSRRSSHTALIDVQGVIADKESASAENIVTALQKAF 108

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118
            D+    +I+ ++SPGGS      ++  I++++  KP I     +    AS  Y I+ A+
Sbjct: 109 EDEKTRGVILRINSPGGSPVQSGYVYDEIRRLRAAKPDIKVYAVITDLGASGAYYIASAA 168

Query: 119 NIIVAAETSLVGSIGVLFQYP 139
           + I A + SLVGSIGV     
Sbjct: 169 DQIYADKASLVGSIGVTAAGF 189


>gi|163796636|ref|ZP_02190595.1| Periplasmic serine protease [alpha proteobacterium BAL199]
 gi|159178196|gb|EDP62741.1| Periplasmic serine protease [alpha proteobacterium BAL199]
          Length = 425

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 92/238 (38%), Gaps = 16/238 (6%)

Query: 35  SPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
            P +A + + G +                 ++ + +E +        +++ L +PGG A 
Sbjct: 55  EPGIAVVPVLGTLVRRSSYLAAASGLMAYADIGDEVEAVLSSADVRGVLLELDTPGGEAG 114

Query: 82  AGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
               +   + +++  + KP+     E A SAGY I+  +  I    T+ VGSIGV+  + 
Sbjct: 115 GVFDLADRLSELQRASGKPIWAIADEAALSAGYAIASVAEQIWLTRTAEVGSIGVVAVHV 174

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                  + G++   V +   K + SP   ++  A   +Q  VD+    FV LV+ +R +
Sbjct: 175 DQSAADRQAGLAYSFVHAGAHKIDGSPHLPLSDSARARIQADVDALNDAFVDLVARNRGL 234

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
             D      +   + G  A   GL D VG  +    +             + +   K 
Sbjct: 235 AADAVRRT-EAATFRGERAVVAGLADWVGNMDTTLAAFAERIGRPRSIATRAFPGVKE 291


>gi|42520455|ref|NP_966370.1| prophage LambdaW4, minor capsid protein C, putative [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|58696804|ref|ZP_00372334.1| hypothetical protein WwSim0278 [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58699409|ref|ZP_00374166.1| hypothetical protein WwAna0001 [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|99034491|ref|ZP_01314479.1| hypothetical protein Wendoof_01000714 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|225630333|ref|YP_002727124.1| minor capsid protein C, putative [Wolbachia sp. wRi]
 gi|225630727|ref|YP_002727518.1| minor capsid protein C, putative [Wolbachia sp. wRi]
 gi|42410194|gb|AAS14304.1| prophage LambdaW4, minor capsid protein C, putative [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|58534074|gb|EAL58316.1| hypothetical protein WwAna0001 [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58536999|gb|EAL60149.1| hypothetical protein WwSim0278 [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225592314|gb|ACN95333.1| minor capsid protein C, putative [Wolbachia sp. wRi]
 gi|225592708|gb|ACN95727.1| minor capsid protein C, putative [Wolbachia sp. wRi]
          Length = 353

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 89/186 (47%), Gaps = 1/186 (0%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           +   +++ E IE    D     +I+ + SPGG       +   I + + +K ++   ++ 
Sbjct: 66  MTSYEKISEEIEEALIDKEVETIILDIDSPGGEVNGLFDLSDFIYQARRKKRIVAIANDD 125

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           A SA Y I+ ++  ++   TS VGSIGV+  +     F +K G+   +V +   K + +P
Sbjct: 126 AYSAAYAIASSAEKVLVTRTSGVGSIGVIASHIDQSGFDEKQGIKYTTVFAGSRKNDLNP 185

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
              +  ++++ ++  V+  Y   V L++ +RN+  +       G  + G +A ++GL D 
Sbjct: 186 HEPITSESLESLKSEVNRLYGMLVELIARNRNLSVEAIKSTEAGLYF-GEKAVEIGLADG 244

Query: 227 VGGQEE 232
           +    E
Sbjct: 245 ITILSE 250


>gi|315126452|ref|YP_004068455.1| periplasmic protease [Pseudoalteromonas sp. SM9913]
 gi|315014966|gb|ADT68304.1| putative periplasmic protease [Pseudoalteromonas sp. SM9913]
          Length = 338

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 100/244 (40%), Gaps = 13/244 (5%)

Query: 30  HVEDNSPHVARIAIRG-----QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
             E+    +  I   G     ++E  +E +  I  I+ D     ++V L S GG  +   
Sbjct: 83  EKEEPKSRLYVIDFNGSMDAHEVESLREEVTAIISIA-DPKKDKVLVRLESGGGVVHGYG 141

Query: 85  AIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+ K+        + ++AAS GY+++C ++ I+AA  ++VGSIGV+ Q P    
Sbjct: 142 LAASQLQRFKSAGIELTVSIDKVAASGGYMMACVADHIIAAPFAIVGSIGVIAQIPNFNK 201

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K  V  + + +   K   + F E   KA +  ++ ++ ++  F   VS  R  P   
Sbjct: 202 ILKKNDVDFEQITAGEFKRTLTLFGENTDKAREKFREEIEQTHVLFKTFVSTQR--PSLN 259

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
             +++ G  W   +A + GL+D +   ++                   +   K       
Sbjct: 260 MDLVATGEHWFATQAIEKGLVDTIKTSDDALLEQQHQNQIYK----VQYKIKKGLSDKLA 315

Query: 264 KNLS 267
             LS
Sbjct: 316 IGLS 319


>gi|265763947|ref|ZP_06092515.1| protease [Bacteroides sp. 2_1_16]
 gi|263256555|gb|EEZ27901.1| protease [Bacteroides sp. 2_1_16]
          Length = 345

 Score = 77.7 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 76/226 (33%), Gaps = 6/226 (2%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
                    V  +   G +   +       I     +D  + +++ ++ PGG     + +
Sbjct: 122 DDASLPQGAVVVLTCEGVLYSWETYRLERYISAAMANDRISGVVLFVNGPGGMITRVDVL 181

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS--LVGSIGVLFQYPYVKPF 144
            + I+  ++ KP++  +  + ASA +    A      +     +     V     + + +
Sbjct: 182 EKLIR--QSPKPIVAYITGVCASAHFWFVSACARRFVSSPMDEIGSCGVVYTFQSFKEYY 239

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
                        S      +   +   +   ++++ +   +H F + ++ +  + YD  
Sbjct: 240 AQMGIEIEDIYPDSADLKNRAYRDKEEKQDDTLIKENLSFYHHLFAQAIARNLGVKYDAQ 299

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
             L  G+ +    A   G +D  G  E+    + A    +   K+ 
Sbjct: 300 DPLFRGQTFFADTALAKGYVDAYGSLEDAILWIAAQKTVKRANKMI 345


>gi|188533754|ref|YP_001907551.1| putative periplasmic protease [Erwinia tasmaniensis Et1/99]
 gi|188028796|emb|CAO96658.1| Peptidase family U7 protein [Erwinia tasmaniensis Et1/99]
          Length = 349

 Score = 77.7 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 106/227 (46%), Gaps = 12/227 (5%)

Query: 32  EDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           ED    +  I  +G ++ S+      E+   +    + D    +++ L SPGG  +    
Sbjct: 97  EDERSTLYVIDFKGSMDASEVSSLREEVSAVMAVAEKGDE---VLLRLESPGGVVHGYGL 153

Query: 86  IFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
               +Q+++++   +T  V ++AAS GY+++C ++ IVAA  S++GSIGV+ Q P     
Sbjct: 154 AASQLQRLRDKGITLTVAVDKVAASGGYMMACVADRIVAAPFSIIGSIGVVAQIPNFNRL 213

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L +  + ++   +   K   + F E   +  +  ++ ++ ++  F + V + R  P    
Sbjct: 214 LKRNEIDVEMHTAGEYKRTLTLFGENTEQGREKFREDLNETHLLFKQFVHQMR--PALDI 271

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
             ++ G  W G +A + GL+D +   +++     A      IR  + 
Sbjct: 272 DSVATGEHWYGTQALEKGLVDAISTSDDLIIDKMAKHQVIGIRYARR 318


>gi|254497745|ref|ZP_05110518.1| putative periplasmic protease [Legionella drancourtii LLAP12]
 gi|254353038|gb|EET11800.1| putative periplasmic protease [Legionella drancourtii LLAP12]
          Length = 282

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 102/233 (43%), Gaps = 15/233 (6%)

Query: 39  ARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
             +   G I+ SQ  +E++       +        ++V L SPGG   +       +Q++
Sbjct: 49  YVLDFHGDIKASQ--VEQLRDEITAILCTAKPEDEVLVRLDSPGGIVNSYGLAASQLQRI 106

Query: 94  KNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           +++       + ++AAS GYL++C +N I+AA  +++GSIGV+ Q P +  +L K  V I
Sbjct: 107 RDKNIPLTVSIDKIAASGGYLMACVANRIIAAPFAIIGSIGVVAQIPNLHRWLKKHDVDI 166

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
           + + +   K   +   E   K  +  Q+ ++  +  F   ++ +R         ++ G  
Sbjct: 167 ELLTAGEYKRTLTLLGENTEKGRKKFQEDLEKIHTAFRNYIATNR--DQLDMDKIATGEH 224

Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
           W   +A ++ L+D +   +E       L    + +  K   PPK      L  
Sbjct: 225 WLAKDALELNLVDKLSTSDEYL-----LDKVSTYKAFKLTIPPKTSLANKLLK 272


>gi|219121417|ref|XP_002185933.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582782|gb|ACI65403.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 165

 Score = 77.3 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 2/165 (1%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAET 126
           +I+S++SPGGS  +       I+++ N         V   AAS GY+I+  ++ IVAA  
Sbjct: 1   VILSVNSPGGSVASYGLASAQIERLANVVGITTTACVDRYAASGGYMIASQAHRIVAAPF 60

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           + VGS+GV+ +         + GV    +K+   K   + F  V+ + ++   + ++  +
Sbjct: 61  ASVGSVGVIMEGLNFHDLAKRYGVQPMILKAGNEKNPLTTFGSVSKQDLKHETERLEKVH 120

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
             F +LV   R    DK   +++G ++ G EA ++GL+D V   +
Sbjct: 121 DAFRQLVVRGRPELADKLDEVANGNVFLGLEAVELGLVDAVMTSD 165


>gi|332306445|ref|YP_004434296.1| Peptidase S49 domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173774|gb|AEE23028.1| Peptidase S49 domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 344

 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 114/265 (43%), Gaps = 23/265 (8%)

Query: 32  EDNSPHVARIAIRGQIE--DSQELIERIERISRDDSATA-LIVSLSSPGGSAYAGEAIFR 88
           ED   ++  I   G ++  + + L E +  +         ++V L S GG  +       
Sbjct: 92  EDEKGNLYVIDFNGSMDAHEVENLREEVTAVICIAKPKDEVLVRLESGGGVVHGYGLAAS 151

Query: 89  AIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            +Q++K++K      V ++AAS GY+++C ++ ++AA+ +++GSIGV+ Q P     L K
Sbjct: 152 QLQRLKDKKIPLTVSVDKVAASGGYMMACVADNVLAAKFAIIGSIGVIAQIPNFNKLLKK 211

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
             +  +   +   K   + F E N +  +  +D ++  +  F   V E R  P      +
Sbjct: 212 NDIEFEQHTAGQFKRTLTMFGENNDEGREKFRDELEDVHQMFKGFVQEHR--PALAIDTV 269

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           + G  W G++A ++GL+D +   ++   S        S +KI            +   +S
Sbjct: 270 ATGEYWYGSKALELGLVDTIQTSDDFLLSA------NSDKKIYSVKYSVKKNLAEKFGMS 323

Query: 268 ISSLLEDTIPLMKQTKVQGLWAVWN 292
           +S  +              L  +W+
Sbjct: 324 VSHGVA-----------NTLMKLWH 337


>gi|535524|gb|AAA57008.1| protease IV [Escherichia coli]
 gi|535526|gb|AAA57009.1| protease IV [Escherichia coli]
 gi|535528|gb|AAA57010.1| protease IV [Escherichia coli]
 gi|535542|gb|AAA57017.1| protease IV [Escherichia coli]
          Length = 324

 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 78/197 (39%), Gaps = 11/197 (5%)

Query: 63  DDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
           D + T +++ L +  G      + I +A+++ ++    +  V E  +   Y ++  +N I
Sbjct: 1   DRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKI 60

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQ 179
             +   +V   G      Y K  LDKL VS    +    K+   PF   +++P A +   
Sbjct: 61  WLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADS 120

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQE 231
             +   +  ++  V+ +R IP ++           L+     T   A +  L+D +    
Sbjct: 121 RWIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSA 180

Query: 232 EVWQSLYALGVDQSIRK 248
           E+ ++L          K
Sbjct: 181 EIEKALTKEFGWSKTDK 197



 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 10/115 (8%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGG+
Sbjct: 210 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGT 269

Query: 80  AYAGEAI-FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
             A E I           KPV+  +  MAAS GY IS  +N IVA  ++L GSIG
Sbjct: 270 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIG 324


>gi|317492188|ref|ZP_07950618.1| peptidase family S49 [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919893|gb|EFV41222.1| peptidase family S49 [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 348

 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 107/249 (42%), Gaps = 10/249 (4%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYA 82
           +         P +  +  +G ++  +   L E I   ++       +++ L SPGG  + 
Sbjct: 90  AKQGIAAKEKPCLYVLDFKGSMDAHEVSSLREEISAVLAVAKQGDEVLLRLESPGGVVHG 149

Query: 83  GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  +Q+++     +T  V ++AAS GY+++C ++ IVAA  +++GSIGV+ Q P  
Sbjct: 150 YGLAASQLQRLRQAGVRLTVAVDKVAASGGYMMACVADRIVAAPFAIIGSIGVVAQIPNF 209

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
             +L K  + ++   +   K   +   E   +  +  ++ ++ ++  F   VS+ R  P 
Sbjct: 210 NRWLKKNDIDVELHTAGEFKRTLTLLGENTEQGREKFREELNETHALFKSFVSQQR--PS 267

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G +AK  GL+D VG  +++  +               +   K     
Sbjct: 268 LDIDSVATGEHWYGIQAKDKGLVDSVGTSDDLLIAEMENHDVIG----VRYTRRKRMMDR 323

Query: 262 DLKNLSISS 270
              + + S+
Sbjct: 324 FTNSAAESA 332


>gi|308050237|ref|YP_003913803.1| inner membrane peptidase [Ferrimonas balearica DSM 9799]
 gi|307632427|gb|ADN76729.1| inner membrane peptidase [Ferrimonas balearica DSM 9799]
          Length = 338

 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 103/265 (38%), Gaps = 22/265 (8%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
            F        ++  VA++         +E+   +      D    ++V + S GG  +A 
Sbjct: 95  LFLIDFKAGIDAAQVAQLR--------EEITAVLTVAEARDE---VLVRVESGGGMVHAY 143

Query: 84  EAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                 + +++  K      V ++AAS GY+++C  + I++A  ++VGSIGV+ Q P   
Sbjct: 144 GLAASQLDRIRQAKIPLTIAVDKVAASGGYMMACVGDKILSAPFAIVGSIGVIAQLPNFN 203

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L K  +  +   +   K   + F E N       ++ ++ ++  F   V   R  P  
Sbjct: 204 KVLKKHDIEFEQHTAGDFKRTLTMFGENNEAGRDKFREELEETHLLFKEFVQRYR--PEL 261

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               ++ G  W G +A ++GL+D +   ++   +          ++I      +      
Sbjct: 262 DLDKVATGEHWFGLQALELGLVDAIQTSDDYLMA--------QDKEILQLQYEEKKNLAK 313

Query: 263 LKNLSISSLLEDTIPLMKQTKVQGL 287
               +  + LE     + +   + L
Sbjct: 314 RFGRAAETALERGSLKLAELARRPL 338


>gi|60681898|ref|YP_212042.1| putative proteinase [Bacteroides fragilis NCTC 9343]
 gi|60493332|emb|CAH08117.1| putative proteinase [Bacteroides fragilis NCTC 9343]
          Length = 286

 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 76/226 (33%), Gaps = 6/226 (2%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
                    V  +   G +   +       I     +D  + +++ ++ PGG     + +
Sbjct: 63  DDASLPQGAVVVLTCEGVLYSWETYRLERYISAAMANDRISGVVLFVNGPGGMITRVDVL 122

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS--LVGSIGVLFQYPYVKPF 144
            + I+  ++ KP++  +  + ASA +    A      +     +     V     + + +
Sbjct: 123 EKLIR--QSPKPIVAYITGVCASAHFWFVSACARRFVSSPMDEIGSCGVVYTFQSFKEYY 180

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
                        S      +   +   +   ++++ +   +H F + ++ +  + YD  
Sbjct: 181 AQMGIEIEDIYPDSADLKNRAYRDKEEKQDDTLIKENLSFYHHLFAQAIARNLGVKYDAQ 240

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
             L  G+ +    A   G +D  G  E+    + A    +   K+ 
Sbjct: 241 DPLFRGQTFFADTALAKGYVDAYGSLEDAILWVAAQKTVKRANKMI 286


>gi|2282048|gb|AAB65791.1| Z2Z3 protein [Vibrio shilonii AK1]
          Length = 330

 Score = 76.6 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 83/223 (37%), Gaps = 19/223 (8%)

Query: 29  SHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSS 75
           S + +    VA I + G I               ++ L +       + S  A+I+++ S
Sbjct: 30  SQITEMRDGVAIIHVNGVISRYANLFHAVCGGVSTEVLAKEFNAALNESSVKAVILNVDS 89

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           PGG A     +   I   + +KPV   V     SA Y I+ A + +    T+ VGSIG +
Sbjct: 90  PGGEASGIHELSEMIHASRGKKPVRAYVGGDGCSAAYWITTACDRVTMDATARVGSIGTV 149

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                V           K  +    ++        + +    +Q  +D+    F+  V+ 
Sbjct: 150 -----VSFVKRPDAEGAKRFEFVSSQSPNKRLDPESEQGQTAIQTQLDAMAEVFISRVAR 204

Query: 196 SRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           +  +  DK       G +  G +A   G+   +G  E +  SL
Sbjct: 205 NMGVTSDKVKSDFGQGGVKIGQQAVDAGMAHELGSLEALIASL 247


>gi|209694710|ref|YP_002262638.1| putative periplasmic protease [Aliivibrio salmonicida LFI1238]
 gi|208008661|emb|CAQ78846.1| probable protease SohB [Aliivibrio salmonicida LFI1238]
          Length = 353

 Score = 76.6 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 102/253 (40%), Gaps = 12/253 (4%)

Query: 35  SPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
              +  +  +G I        +E +  I  I+ +     +++ L S GG  +        
Sbjct: 104 DARLFVLDFKGSIDAKEVAGLREEVSAILAIAVEGD--EVLLRLESGGGMVHGYGLASSQ 161

Query: 90  IQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
           + +++     +   V ++AAS GY+++C    I+AA  ++VGSIGV+ Q P     L + 
Sbjct: 162 LDRLRDANITLTISVDKVAASGGYMMACIGEKIIAAPFAIVGSIGVVAQLPNFSKLLKRN 221

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
            +  + + +   K   + F E + KA +  Q  ++ ++  F   + E R         ++
Sbjct: 222 DIEFEQLTAGEYKRTLTMFGENSDKAREKFQLELEETHVLFKDFIHEHRADL--DLEKVA 279

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
            G  W G +A ++GLID +   ++            +I  +             +   S 
Sbjct: 280 TGEHWFGKQALELGLIDAIQTSDDYVTQACKDREVLAIHYV--QKKKLGAKIAGIAGQSA 337

Query: 269 SSLLEDTIPLMKQ 281
            ++    I + ++
Sbjct: 338 ENVFMRMINIGQR 350


>gi|223993391|ref|XP_002286379.1| hypothetical protein THAPSDRAFT_261093 [Thalassiosira pseudonana
           CCMP1335]
 gi|220977694|gb|EED96020.1| hypothetical protein THAPSDRAFT_261093 [Thalassiosira pseudonana
           CCMP1335]
          Length = 185

 Score = 76.6 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 7/178 (3%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN----IIVAA 124
           +++ L SPGG+          + +++N   +   V     +A      A       + AA
Sbjct: 2   ILLLLDSPGGTVQDYGLASSHLARLRNEPHITLSVCVDRVAASGGYMMACQATPGQLFAA 61

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             ++VGSIGVL +       L K GV    +K+   KA      EV  + ++M Q   D 
Sbjct: 62  PFAMVGSIGVLMETINFNDVLKKYGVKPLVIKAGKNKAPLKTLGEVTNEELKMAQSDADV 121

Query: 185 SYHWFVRLVSESRNI---PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
            +  F   V +SR            +  G ++ G EA+++GLID V   +E      A
Sbjct: 122 IHKAFQDWVLQSRPNVVVSKGWIEKVCTGSVFLGKEARELGLIDRVMTSDEYVAERIA 179


>gi|146329631|ref|YP_001208985.1| putative periplasmic protease [Dichelobacter nodosus VCS1703A]
 gi|146233101|gb|ABQ14079.1| S49 family peptidase [Dichelobacter nodosus VCS1703A]
          Length = 333

 Score = 76.2 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 95/211 (45%), Gaps = 10/211 (4%)

Query: 30  HVEDNSPHVARIAIRG-----QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
              D  P +  I   G      +ED ++ I  I +++ ++    +++ L S GG  YA  
Sbjct: 84  KNSDERPRLFVIDFDGDVEASAVEDLRDQISAILQVAEEED--EVLLRLESAGGYVYAYG 141

Query: 85  AIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                + +++++    +  V ++AAS GY+++C ++ ++AA  +LVGSIGV+ + P    
Sbjct: 142 LAASQLVRLRDKAVRLVIAVDKVAASGGYMMACVADELLAAPFALVGSIGVIGELPNFHD 201

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K  +  +   +   K   + F +      +  +  +  ++  F   +   R  P   
Sbjct: 202 LLRKNDIHYEQHTAGQYKRTLTVFGQNTEDDRKQFRHELAETHALFKAHIQAMR--PNLA 259

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
              ++ G  W G++A   GLID V   ++  
Sbjct: 260 VEEVATGETWYGSQALAKGLIDRVQTSDDYV 290


>gi|53713622|ref|YP_099614.1| protease [Bacteroides fragilis YCH46]
 gi|52216487|dbj|BAD49080.1| probable protease [Bacteroides fragilis YCH46]
          Length = 345

 Score = 76.2 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 76/226 (33%), Gaps = 6/226 (2%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
                    V  +   G +   +       I     +D  + +++ ++ PGG     + +
Sbjct: 122 DDASLPQGAVVVLTCEGVLYSWETYRLERYISAAMANDRISGVVLFVNGPGGMITRVDVL 181

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS--LVGSIGVLFQYPYVKPF 144
            + I+  ++ KP++  +  + ASA +    A      +     +     V     + + +
Sbjct: 182 EKLIR--QSPKPIVAYITGVCASAHFWFVSACARRFVSSPMDEIGSCGVVYTFQSFKEYY 239

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
                        S      +   +   +   ++++ +   +H F + ++ +  + YD  
Sbjct: 240 AQMGIEIEDIYPDSADLKNRAYRDKEEKQDDTLIKENLSFYHHLFAQTIARNLGVKYDAQ 299

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
             L  G+ +    A   G +D  G  E+    + A    +   K+ 
Sbjct: 300 DPLFRGQTFFADTALAKGYVDAYGSLEDAILWVSAQKTVKRANKMI 345


>gi|304311309|ref|YP_003810907.1| Peptidase family S49 [gamma proteobacterium HdN1]
 gi|301797042|emb|CBL45255.1| Peptidase family S49 [gamma proteobacterium HdN1]
          Length = 344

 Score = 76.2 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 101/251 (40%), Gaps = 14/251 (5%)

Query: 36  PHVARIAIRGQI--EDSQELIERIERI--SRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
             V  +   G +  E  + L + I  I          +++ L SPGG  +        ++
Sbjct: 94  KRVYVLDFNGDVRAEGVESLRQEITAILTFATPE-DEVVMRLESPGGQVHMYGFAASQLE 152

Query: 92  KVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           ++K R   +T    ++AAS GY+++C +N I+AA  ++VGSIGV+ + P     L +L +
Sbjct: 153 RLKTRNIPLTVCVDKVAASGGYMMACVANRIIAAPFAIVGSIGVVAELPNFNRVLKRLDI 212

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
                 +   K   +   E     +   ++ ++ +   F  LV   R  P      ++ G
Sbjct: 213 DYDVYTAGEFKRTVTMMGENTADGIAKFKEELEDTQVLFKALVHRHR--PQLAIDGVATG 270

Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270
             W G+ A    LID +G  ++    L           I +          +   L + +
Sbjct: 271 EHWYGSSALSNALIDELGTSDDYLFDLSKNA------DIFEIKYEIRRGLAEKLGLHLDA 324

Query: 271 LLEDTIPLMKQ 281
           ++++ +    +
Sbjct: 325 MIKNAVGRALR 335


>gi|257455400|ref|ZP_05620635.1| peptidase, S49 [Enhydrobacter aerosaccus SK60]
 gi|257447362|gb|EEV22370.1| peptidase, S49 [Enhydrobacter aerosaccus SK60]
          Length = 330

 Score = 76.2 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 105/258 (40%), Gaps = 6/258 (2%)

Query: 30  HVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATA-LIVSLSSPGGSAYAGEAI 86
             +  + +   +   G I   + Q+L E I  +     A   +IV L S GG  +A    
Sbjct: 66  KNKTANKNCFVLDFHGDIKATEVQQLREEISTLLTVAQAEDEVIVRLESSGGMVHAYGLA 125

Query: 87  FRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
              + ++K     +   + ++AAS GY+++C ++ I+AA  ++VGSIGV+ Q P     L
Sbjct: 126 AAQLARIKEAGLHLTVCIDKVAASGGYMMACVADKILAAPFAVVGSIGVVAQVPNFHDLL 185

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           +K  + ++   +   K   + F E   +  Q  Q  ++ ++  F   V + R  P     
Sbjct: 186 EKHDIDVEVFTAGKYKRTVTVFGENTEEDKQKFQQELEETHKLFKDFVRKYR--PSLDVE 243

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            ++ G  W G +A    L+D +   +             +I+  +     +         
Sbjct: 244 QVATGEHWYGEDAITRNLVDALQTSDSYILEKMTDSELYAIQSRQKPTIAQKLGISQAAQ 303

Query: 266 LSISSLLEDTIPLMKQTK 283
             +++ ++     + + +
Sbjct: 304 AVVATAIDKLPDALAKLE 321


>gi|330877863|gb|EGH12012.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 149

 Score = 76.2 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 10/156 (6%)

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           +          +DKLGV  ++  S   KA   PF        Q  Q V+D+++  F+  V
Sbjct: 1   MTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFWQGVLDTTHRQFIASV 60

Query: 194 SESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
            + R           L  G IWTG +A  +GL+D +G    V + +         + I +
Sbjct: 61  KQGRGDRLKDKDHPELFSGLIWTGEQAVALGLVDGLGSASYVARDVIK------EKDIVE 114

Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           +   ++ +    K L  S  + + I ++       L
Sbjct: 115 YTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 148


>gi|21672552|ref|NP_660619.1| putative periplasmic protease [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25009272|sp|Q8K9P8|SOHB_BUCAP RecName: Full=Probable protease sohB
 gi|21623177|gb|AAM67830.1| possible protease SohB [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 342

 Score = 76.2 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 96/220 (43%), Gaps = 7/220 (3%)

Query: 41  IAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV- 99
           I     I   +E+   +   ++DD    +++ L S GG  +        +++++  K   
Sbjct: 106 IHAHEVIGLREEISAILLAANKDDE---VLLRLESSGGVIHGYGLAAAQLERLRQNKIRL 162

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
           I  + ++AAS GY+++C ++ I++A  +++GSIGV+ Q P     L K  + ++   +  
Sbjct: 163 IISIDKIAASGGYMMACVADYIISAPFAIIGSIGVVGQLPNFNKLLKKCNIDVELHTAGD 222

Query: 160 MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAK 219
            K   + F +      +     ++ ++  F + + + R         +S+G  W G  A 
Sbjct: 223 YKRTLTMFGQNTELTRKKFCQELNLTHEIFKKFIKKMRPCL--DIENISNGEHWFGTIAF 280

Query: 220 KVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPKNY 258
           K  L+D +   + +    +       +I+ I      +N+
Sbjct: 281 KKNLVDEINTSDNILMSKMKEKYTLLNIQYIYKNKKLENF 320


>gi|213423129|ref|ZP_03356144.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 296

 Score = 76.2 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 91/210 (43%), Gaps = 12/210 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSAY 81
                 + P V  I  +G ++  +  +  +                A++  L SPGG  +
Sbjct: 92  GDIATSDKPRVWVIDFKGSMDAHE--VNALREEVTAVLAVAKPGDRAVV-RLESPGGVVH 148

Query: 82  AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   +Q+++++   +T    ++AAS GY+++C +  I+AA  ++VGSIGV+ Q P 
Sbjct: 149 GYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPN 208

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
              FL    + I+   +   K   +   E   +  Q  ++ ++ ++H F   V   R  P
Sbjct: 209 FNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMR--P 266

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                 ++ G  W G +A + GL+D +   
Sbjct: 267 ALDIEQVATGEHWYGQQALEKGLVDEINTS 296


>gi|189022217|ref|YP_001931948.1| serine peptidase S49 family [Vibrio shilonii]
 gi|161087235|gb|ABX56715.1| putative serine peptidase S49 family [Vibrio shilonii]
          Length = 434

 Score = 76.2 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 83/223 (37%), Gaps = 19/223 (8%)

Query: 29  SHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSS 75
           S + +    VA I + G I               ++ L +       + S  A+I+++ S
Sbjct: 49  SQITEMRDGVAIIHVNGVISRYANLFHAVCGGVSTEVLAKEFNAALNESSVKAVILNVDS 108

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           PGG A     +   I   + +KPV   V     SA Y I+ A + +    T+ VGSIG +
Sbjct: 109 PGGEASGIHELSEMIHASRGKKPVRAYVGGDGCSAAYWITTACDRVTMDATARVGSIGTV 168

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                V           K  +    ++        + +    +Q  +D+    F+  V+ 
Sbjct: 169 -----VSFVKRPDAEGAKRFEFVSSQSPNKRLDPESEQGQTAIQTQLDAMAEVFISRVAR 223

Query: 196 SRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           +  +  DK       G +  G +A   G+   +G  E +  SL
Sbjct: 224 NMGVTSDKVKSDFGQGGVKIGQQAVDAGMAHELGSLEALIASL 266


>gi|150024898|ref|YP_001295724.1| S49 family serine protease [Flavobacterium psychrophilum JIP02/86]
 gi|149771439|emb|CAL42908.1| Putative S49 family serine protease [Flavobacterium psychrophilum
           JIP02/86]
          Length = 294

 Score = 76.2 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 80/223 (35%), Gaps = 10/223 (4%)

Query: 28  SSHVEDNSPHVARIAIRGQIE--------DSQELIERIERISRDDSATALIVSLSSPGGS 79
            + +      +A++ + G+I          + E++ ++ +    D+  A +  + SPGGS
Sbjct: 64  GNSISVPKNSIAQVKMMGEIVAYSDWCAIGADEIVAQLYKAQEMDNVDATVFRIDSPGGS 123

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
             A +A     +        + +          +  C   +     +S  GSIGV+  + 
Sbjct: 124 TKAIDAFREFSKYKTKPIVGLVKDGLSLGYWAAIEVCDYIMADGDVSSRFGSIGVVASFR 183

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV-NPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                L+  G+ I  +       +     +  +     ++++ +      F   V   R 
Sbjct: 184 DNTKALEVAGIKIHEIYPPESNHKNKDVKDARSGDYEGIIKNSLSPLAGMFQGGVISKRP 243

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
               +   + +G ++   EA ++GLID +G      Q    L 
Sbjct: 244 NLIKE-EGVLNGGVYFAKEALRLGLIDGIGDSRMAIQKAKQLA 285


>gi|332533580|ref|ZP_08409442.1| SohB protein, peptidase U7 family [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036982|gb|EGI73441.1| SohB protein, peptidase U7 family [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 338

 Score = 75.8 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 102/216 (47%), Gaps = 7/216 (3%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIE--DSQELIERIERISR--DDSATALIVSLSSPGGSAY 81
           S  +  ++  P +  I   G ++  + + L E I  I    + S   +++ L S GG  +
Sbjct: 79  SKKADKDELKPRLYVIDFVGSMDAHEVESLREEITAIISIANPSKDKVLIRLESGGGVVH 138

Query: 82  AGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   +Q++KN    ++  + ++AAS GY+++C ++ I+AA  ++VGSIGV+ Q P 
Sbjct: 139 GYGLAASQLQRIKNAGIPLSVAIDKVAASGGYMMACVADEILAAPFAIVGSIGVIAQIPN 198

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  V  + + +   K   + F E   KA +  ++ ++ ++  F   VS  R  P
Sbjct: 199 FNKILKKNDVEFEQITAGEFKRTLTLFGENTDKAREKFREEIEQTHDLFKTFVSTQR--P 256

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
                +++ G  W   +A   GL+DV+   ++    
Sbjct: 257 SLDINLVATGEHWFATQAIDKGLVDVIKTSDDALLE 292


>gi|535570|gb|AAA57031.1| protease IV [Escherichia coli]
          Length = 324

 Score = 75.8 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 11/197 (5%)

Query: 63  DDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
           D + T +++ L +  G      + I +A+++ ++    +  V E  +   Y ++  +N I
Sbjct: 1   DRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKI 60

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQ 179
             +   +V   G      Y K  LDKL VS    +    K+   PF   +++P A +   
Sbjct: 61  WLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADS 120

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQE 231
             +   +  ++  V+ +R IP  +           L+     T   A +  L+D +    
Sbjct: 121 RWIGELWQNYLNTVAANRQIPAQQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSA 180

Query: 232 EVWQSLYALGVDQSIRK 248
           E+ ++L          K
Sbjct: 181 EIEKALTKEFGWSKTDK 197



 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 10/115 (8%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGG+
Sbjct: 210 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGT 269

Query: 80  AYAGEAI-FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
             A E I           KPV+  +  MAAS GY IS  +N IVA  ++L GSIG
Sbjct: 270 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIG 324


>gi|288941275|ref|YP_003443515.1| peptidase S49 [Allochromatium vinosum DSM 180]
 gi|288896647|gb|ADC62483.1| peptidase S49 [Allochromatium vinosum DSM 180]
          Length = 338

 Score = 75.8 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 104/250 (41%), Gaps = 18/250 (7%)

Query: 40  RIAIRGQIEDSQE------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
            I   G I  S+       +   ++     D    ++V L + GG           + ++
Sbjct: 100 IIEFNGDIRASEVSALRVLVTTLLQEARAGDQ---VLVRLDNAGGMVSEHGLAASQLARL 156

Query: 94  KNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           + R       V ++AAS GYL++C ++ I+AA  +++GSIGVL + P     L++ GV  
Sbjct: 157 RARGIPLTIAVDKVAASGGYLMACVADRIIAAPFAVIGSIGVLAELPNFHRVLERYGVDF 216

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
           +   +   K   + F E   +  Q +++ ++ ++  F   VSE R  P      ++ G  
Sbjct: 217 ELHTAGEYKRTLTLFGENTDEGRQKLREQLEETHRLFKAFVSEYR--PGLDLERVATGEY 274

Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
           W G  A ++GL+D +   ++      A      ++    +   K      +   S+  +L
Sbjct: 275 WHGRRAVELGLVDAIQTSDDFILEAGAEMELLKLK----YRAHKKPIERLV--ASVRGVL 328

Query: 273 EDTIPLMKQT 282
           +  +    + 
Sbjct: 329 DQVLAAASRL 338


>gi|27904758|ref|NP_777884.1| putative periplasmic protease [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46396886|sp|Q89AL0|SOHB_BUCBP RecName: Full=Putative protease sohB
 gi|27904155|gb|AAO26989.1| putative protease SohB [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 349

 Score = 75.8 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 98/217 (45%), Gaps = 12/217 (5%)

Query: 34  NSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
             P +  I  +G I         +E+   I    + D    +++ L S GG+ +      
Sbjct: 102 AQPTLYVIDFKGGIAAHEVKSLREEISSIISVAQKHDE---VLLRLESSGGTIHGYGLAA 158

Query: 88  RAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
             +Q++++RK      + ++A S GY+++C +N I+A   S++GSIGV+ Q+P +  FL 
Sbjct: 159 VQLQRLRSRKIFLTISIDKIATSGGYMMACVANYIIATPFSIIGSIGVVAQFPNIHKFLK 218

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           K  + ++   +   K   + F E  P+  +   + ++ ++  F + V   R  P      
Sbjct: 219 KNNIDVELHTAGVHKRTLTIFGENTPEDRKKFVEELNVAHDLFKKFVKTMR--PSLNIEK 276

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
           LS+G  W G+ A K  L+D +   ++   S       
Sbjct: 277 LSNGECWFGSIALKKKLVDDINTSDDFIISRIRKFNI 313


>gi|224014857|ref|XP_002297090.1| protease [Thalassiosira pseudonana CCMP1335]
 gi|220968209|gb|EED86558.1| protease [Thalassiosira pseudonana CCMP1335]
          Length = 217

 Score = 75.8 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 91/214 (42%), Gaps = 10/214 (4%)

Query: 36  PHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
           P++      G +  SQ  +  +       +        +++ L S GG+          +
Sbjct: 2   PNLFVTRFSGDVSASQ--VNDLREEVTGILRASQPGDEVLMILQSGGGTVTGYGLSAAQL 59

Query: 91  QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           Q+ K +   +   V ++AAS GY++ C ++ IVA+  +++GSIGV+   P     L + G
Sbjct: 60  QRFKTKGLKLTICVEQVAASGGYMMCCTADRIVASPFAVLGSIGVISDIPNAYERLKQEG 119

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +  +++ +   K   +P  +V  + ++  ++ ++     F   V   R  P      ++ 
Sbjct: 120 IEFQTITAGKYKRTVTPTKKVTKEDLKKSEEDINDILKLFKAFVKSQR--PQLDIENVAT 177

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
           G  W G +A   GL D +   ++V       G D
Sbjct: 178 GETWFGEDALAKGLCDEIATADDVLLEFVDNGYD 211


>gi|535530|gb|AAA57011.1| protease IV [Escherichia coli]
          Length = 324

 Score = 75.8 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 11/197 (5%)

Query: 63  DDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
           D + T +++ L +  G      + I +A+++ ++    +  V E  +   Y ++  +N I
Sbjct: 1   DRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKI 60

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQ 179
             +   +V   G      Y K  LDKL VS    +    K+   PF   +++P A +   
Sbjct: 61  WLSPQGVVDLHGFATNSLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADS 120

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQE 231
             +   +  ++  V+ +R IP  +           L+     T   A +  L+D +    
Sbjct: 121 RWIGELWQNYLNTVAANRQIPAHQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSA 180

Query: 232 EVWQSLYALGVDQSIRK 248
           E+ ++L          K
Sbjct: 181 EIEKALTKEFGWSKTDK 197



 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 10/115 (8%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGG+
Sbjct: 210 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGT 269

Query: 80  AYAGEAI-FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
             A E I           KPV+  +  MAAS GY IS  +N IVA  ++L GSIG
Sbjct: 270 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIG 324


>gi|171911267|ref|ZP_02926737.1| peptidase S49 [Verrucomicrobium spinosum DSM 4136]
          Length = 233

 Score = 75.8 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 77/222 (34%), Gaps = 20/222 (9%)

Query: 33  DNSPHVARIAIRGQIE--------------DSQELIERIERISRDDSATALIVSLSSPGG 78
           +   +VA I I G +               D   +   + + ++    + +++ ++SPGG
Sbjct: 15  EGKSNVAVIPIYGVLAKNAGLLQQVCMGFCDINPIAHAVNQAAKAKDVSTIVLDIASPGG 74

Query: 79  SAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
                     A++       K V     E  AS+ Y +   +N I    ++ VGSIG   
Sbjct: 75  QVKGIRETASAVRAAAKTRGKTVYAFSDENMASSAYYLGSQANEIYVTPSATVGSIGTYL 134

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
            +      L   G+ ++   +   K    P   ++     ++Q  VD    WF   V   
Sbjct: 135 AWLDPTMKLAMEGLKLEFFGAGQHKGMGLPGKPLSEGDRVLLQATVDEFNGWFTSAVQ-- 192

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSL 237
                        G+ ++G  A  V L D +    +E    L
Sbjct: 193 -GARPKVVNATMQGQSFSGERAVGVRLADGICDTWDEFIDLL 233


>gi|535536|gb|AAA57014.1| protease IV [Escherichia coli]
          Length = 324

 Score = 75.4 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 77/197 (39%), Gaps = 11/197 (5%)

Query: 63  DDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
           D + T +++ L +  G      + I +A+++ ++    +  + E  +   Y ++  +N I
Sbjct: 1   DRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAIGENYSQGQYYLASFANKI 60

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQ 179
             +   +V   G      Y K  LDKL VS    +    K+   PF   +++P A +   
Sbjct: 61  WLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADS 120

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQE 231
             +   +  ++  V+ +R IP  +           L+     T   A +  L+D +    
Sbjct: 121 RWIGELWQNYLNTVAANRQIPAKQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSA 180

Query: 232 EVWQSLYALGVDQSIRK 248
           E+ ++L          K
Sbjct: 181 EIEKTLTKEFGWSKTDK 197



 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 10/115 (8%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGG+
Sbjct: 210 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGT 269

Query: 80  AYAGEAI-FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
             A E I           KPV+  +  MAAS GY IS  +N IVA  ++L GSIG
Sbjct: 270 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIG 324


>gi|55379667|ref|YP_137517.1| proteinase IV-like [Haloarcula marismortui ATCC 43049]
 gi|55232392|gb|AAV47811.1| proteinase IV-like [Haloarcula marismortui ATCC 43049]
          Length = 308

 Score = 75.4 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 56/272 (20%), Positives = 106/272 (38%), Gaps = 20/272 (7%)

Query: 10  TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSAT 67
           T   +++++    V    +S  E +  +VA + I   I  S  Q+ ++++  +  ++S  
Sbjct: 17  TVLAVIAILIGAAVVPYAASVAEGDEQYVAVVNIDETISSSSSQDTVQKLRELRSNESVE 76

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           A+++ +SSPGGSA + E+++ A++++   KPV T V + AAS  Y  +  S+ I     S
Sbjct: 77  AVVLRISSPGGSAASSESMYLAVKRLSAEKPVYTSVDQYAASGAYYTAVPSDRIYVTPAS 136

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           LVG +GV+   P                      A   P               ++S   
Sbjct: 137 LVGHVGVIGTAPSDGLS---------------PAATTGPDKAHRGMTRDQYYASLESMKR 181

Query: 188 WFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
            FV  V   R    + +   +++   + G  A + G  D VGG E               
Sbjct: 182 AFVGAVMAERGDRLNVSRETVAEASAYQGGRAVQTGYADEVGGLEAAIAGAAGAADISEY 241

Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278
           + +  ++ P +            +    T+  
Sbjct: 242 QVV--YHNPADPRGLLFLTGGSEAGGNATVAA 271


>gi|535532|gb|AAA57012.1| protease IV [Escherichia coli]
 gi|535538|gb|AAA57015.1| protease IV [Escherichia coli]
 gi|535540|gb|AAA57016.1| protease IV [Escherichia coli]
 gi|535568|gb|AAA57030.1| protease IV [Escherichia coli]
          Length = 324

 Score = 75.0 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 11/197 (5%)

Query: 63  DDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
           D + T +++ L +  G      + I +A+++ ++    +  V E  +   Y ++  +N I
Sbjct: 1   DRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKI 60

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQ 179
             +   +V   G      Y K  LDKL VS    +    K+   PF   +++P A +   
Sbjct: 61  WLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADS 120

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQE 231
             +   +  ++  V+ +R IP  +           L+     T   A +  L+D +    
Sbjct: 121 RWIGELWQNYLNTVAANRQIPAQQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSA 180

Query: 232 EVWQSLYALGVDQSIRK 248
           E+ ++L          K
Sbjct: 181 EIEKTLTKEFGWSKTDK 197



 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 10/115 (8%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGG+
Sbjct: 210 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGT 269

Query: 80  AYAGEAI-FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
             A E I           KPV+  +  MAAS GY IS  +N IVA  ++L GSIG
Sbjct: 270 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIG 324


>gi|149911384|ref|ZP_01900003.1| sohB protein, peptidase U7 family [Moritella sp. PE36]
 gi|149805559|gb|EDM65563.1| sohB protein, peptidase U7 family [Moritella sp. PE36]
          Length = 359

 Score = 75.0 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 105/257 (40%), Gaps = 14/257 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
           +S  ED  P +  I     I+        +E+   +   +  D    ++V L S GG  +
Sbjct: 103 ASTDEDIEPRLFVIDFTAGIDAKEVASLREEITAILFVATEHDE---VLVRLESGGGVVH 159

Query: 82  AGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   ++++ +    +   V ++AAS GY+++C ++ I+AA  ++VGSIGV+ Q P 
Sbjct: 160 GYGLASSQLERLKQANIKLTIAVDKVAASGGYMMACIADHIIAAPFAIVGSIGVVAQIPN 219

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  + ++ + +   K   + F E +       Q  ++ ++  F   VS  R  P
Sbjct: 220 FNRLLKKNNIDVEQLTAGEFKRTLTMFGENDDAGRAKFQQELEETHVLFKDFVSTHR--P 277

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                 ++ G  W G  A + GL+D +   ++             ++ +           
Sbjct: 278 DMDIEKIATGEHWFGTHAHERGLVDTLQTSDDYLLKANKSKTIYIVKYVV--RKKLAEKL 335

Query: 261 CDLKNLSISSLLEDTIP 277
               +++IS+ L   + 
Sbjct: 336 AQAASMAISTSLNKFLQ 352


>gi|535534|gb|AAA57013.1| protease IV [Escherichia coli]
          Length = 324

 Score = 75.0 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 77/197 (39%), Gaps = 11/197 (5%)

Query: 63  DDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
           D + T +++ L +  G      + I +A+++ ++    +  + E  +   Y ++  +N I
Sbjct: 1   DRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAIGENYSQGQYYLASFANKI 60

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQ 179
             +   +V   G      Y K  LDKL VS    +    K+   PF   +++P A +   
Sbjct: 61  WLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADS 120

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQE 231
             +   +  ++  V+ +R IP  +           L+     T   A +  L+D +    
Sbjct: 121 RWIGELWQNYLNTVAANRQIPAQQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSA 180

Query: 232 EVWQSLYALGVDQSIRK 248
           E+ ++L          K
Sbjct: 181 EIEKTLTKEFGWSKTDK 197



 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 10/115 (8%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
               D    +  +   G I D +E            +I     D    A+++ ++SPGG+
Sbjct: 210 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGT 269

Query: 80  AYAGEAI-FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
             A E I           KPV+  +  MAAS GY IS  +N IVA  ++L GSIG
Sbjct: 270 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIG 324


>gi|109898498|ref|YP_661753.1| putative periplasmic protease [Pseudoalteromonas atlantica T6c]
 gi|109700779|gb|ABG40699.1| inner membrane peptidase, Serine peptidase, MEROPS family S49
           [Pseudoalteromonas atlantica T6c]
          Length = 344

 Score = 75.0 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 112/247 (45%), Gaps = 10/247 (4%)

Query: 29  SHVEDNSPHVARIAIRG-----QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
              +D   ++  I   G     ++++ +E +  I  I++      ++V L S GG  +  
Sbjct: 89  KGDDDEKGNLYVIDFNGSMDAHEVDNLREEVTAIICIAKPKD--EVLVRLESGGGVVHGY 146

Query: 84  EAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                 +Q++K++   +T  V ++AAS GY+++C ++ ++AA+ +++GSIGV+ Q P   
Sbjct: 147 GLAASQLQRLKDKDIPLTVAVDKVAASGGYMMACVADNVLAAKFAIIGSIGVIAQIPNFN 206

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L K  +  +   +   K   + F E + +  +  +D ++  +  F   V E R  P  
Sbjct: 207 KLLKKNDIEFEQHTAGQFKRTLTMFGENSDEGREKFRDELEDVHQMFKGFVQEHR--PAL 264

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               ++ G  W G++A  +GL+D +   ++       +    S++     N  + +    
Sbjct: 265 AIDTVATGEYWYGSKALDLGLVDTIQTSDDFLLDANNVKKIYSVKYSVKKNLAEKFGISV 324

Query: 263 LKNLSIS 269
            K +  S
Sbjct: 325 TKGVVQS 331


>gi|189022207|ref|YP_001931940.1| peptidase S49 [Vibrio nigripulchritudo]
 gi|160334219|gb|ABX24532.1| putative peptidase S49 [Vibrio nigripulchritudo]
          Length = 434

 Score = 74.6 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 83/223 (37%), Gaps = 19/223 (8%)

Query: 29  SHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSS 75
           S + +    VA I + G I               ++ L +       + S  A+I+++ S
Sbjct: 49  SQITEMRDGVAIIHVNGVISRYANLFHAVCGGVSTEVLAKEFNAAINESSVKAVILNVDS 108

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           PGG A     +   I   + +KPV   V     SA Y I+ A + +    T+ VGSIG +
Sbjct: 109 PGGEASGIHELSEMIHASRGKKPVRAYVGGDGCSAAYWIATACDRVTMDATARVGSIGTV 168

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                V           K  +    ++        + +    +Q  +D+    F+  V+ 
Sbjct: 169 -----VSFVKRPDAEGSKRFEFVSSQSPNKRLDPESEQGQTAIQTQLDAMADVFISRVAR 223

Query: 196 SRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
           +  +  DK       G +  G +A   G+   +G  E +  SL
Sbjct: 224 NMGVTSDKVKSDFGQGGVKIGQQAVDAGMAHELGSLEALIASL 266


>gi|327311349|ref|YP_004338246.1| protease IV [Thermoproteus uzoniensis 768-20]
 gi|326947828|gb|AEA12934.1| protease IV, putative [Thermoproteus uzoniensis 768-20]
          Length = 533

 Score = 74.6 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 106/260 (40%), Gaps = 19/260 (7%)

Query: 35  SPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
              +  I I   +       L+  I R+        +I+ + SPGG+  A EA++ A++ 
Sbjct: 44  KERIVVIPITAPLTSCWVNPLLPYILRL-NSSDVAGIILYIDSPGGTLDATEALYGALKG 102

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           +   KPV   V  + AS  + +S A+  I A+  SLVG+   +  +  + P +    + +
Sbjct: 103 L--GKPVYAVVSGLDASGAFYVSMAAEKIYASPGSLVGN---IGAWAVINPAVFWTPIPL 157

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL-SDGR 211
           +   S   K             +    D VD +   F+ +V +SR    + +  L + GR
Sbjct: 158 EIFPSGYEKLFGMS--------LFGYYDSVDQAAASFLSVVLKSRGDRLNASADLLATGR 209

Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           ++T  EA ++GLID +GG  +    +       S   +  ++                + 
Sbjct: 210 LFTAQEALRIGLIDKIGGLADAVADMARSLGLTSYSVVSIYSYYGISPPNCSGLAMTQAK 269

Query: 272 LEDTIPLMKQTKVQGLWAVW 291
           +   + L+  + +  ++ ++
Sbjct: 270 VP--LGLLANSTLNPVFYIY 287


>gi|164662519|ref|XP_001732381.1| hypothetical protein MGL_0156 [Malassezia globosa CBS 7966]
 gi|159106284|gb|EDP45167.1| hypothetical protein MGL_0156 [Malassezia globosa CBS 7966]
          Length = 704

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 106/206 (51%), Gaps = 11/206 (5%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIE------DSQELIERIERISRDDSATALIVSLSSP 76
           V    + H +D +  VA I ++G ++         E I  +++ + +    A+++ ++S 
Sbjct: 311 VRICANEHADDPADKVAVIFLQGIMDRNSKSCSVSEAIHGLKQAAENKDIRAIVLRINSG 370

Query: 77  GGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG   A EA++ AIQ V+   +KPV+     +AAS  Y  + A++ I A E+++ GSIGV
Sbjct: 371 GGEVIASEALWAAIQHVRKSTQKPVVASFGSVAASGAYYAASAADAIFACESTMTGSIGV 430

Query: 135 LFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
            F  P +   L DK+ ++++++ +  + A      +++ + V  ++  VD  Y  F+  V
Sbjct: 431 AFARPTILRELIDKVQLNVQTILAGSIGASVL--HDLDDQHVSRLRTHVDEMYKDFLHKV 488

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAK 219
            + R +  D    L+ GRI TG  A 
Sbjct: 489 MQGRGMSQDVLAGLAGGRIMTGLAAY 514



 Score = 52.3 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 74/214 (34%), Gaps = 27/214 (12%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPG---------GSAYAGEAIFRAIQKVKNRK 97
           I +  ++IE + R   D     ++   S                  E +  A+ + +  K
Sbjct: 81  ILELHQVIETLRRAKDDARIRGIVADFSQMHVPRAVLRQPLGLAQTEELLTALHEFRTAK 140

Query: 98  PV---------ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
                      +       +   +L++   + +    +  V  +G+     + +  L  L
Sbjct: 141 QDQFGKDQPATVAWSDTFDSQTAFLLATGFDRVYMQSSGQVPLVGLGSSLTFFRRMLQWL 200

Query: 149 GVSI--KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-------NI 199
           GV +  ++              E+ P+ +  + DV+    H   RL+ ++R       ++
Sbjct: 201 GVRVLSETRNEYKSVTSAFVHDELPPEQLANLSDVLGGLQHNMARLLGQNRFSEQGPPHV 260

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
              K   +     ++ +EA   GLID +  + ++
Sbjct: 261 ATAKAEHVLRHGPYSASEALAAGLIDGICHRHDI 294



 Score = 37.7 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 20/65 (30%)

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
                          LV   R        + +D    T   A   GLID +GG  +  + 
Sbjct: 541 QEWTTRAEDNESGNLLVRIERADDDTAANLQNDLASLTPTAAHGRGLIDGIGGLRDAARY 600

Query: 237 LYALG 241
            YAL 
Sbjct: 601 AYALH 605


>gi|323144853|ref|ZP_08079422.1| putative signal peptide peptidase SppA, 36K type [Succinatimonas
           hippei YIT 12066]
 gi|322415378|gb|EFY06143.1| putative signal peptide peptidase SppA, 36K type [Succinatimonas
           hippei YIT 12066]
          Length = 379

 Score = 73.9 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 112/255 (43%), Gaps = 6/255 (2%)

Query: 37  HVARIAIRGQIEDSQ--ELIERIERISRDDSATA-LIVSLSSPGGSAYAGEAIFRAIQKV 93
           ++  +   G  + ++  +L + I+ I    +    +IV+L+SPGG   +       + ++
Sbjct: 123 NLYVVNFVGSTKGNEVKKLRKEIDAILDVATPKDEVIVNLTSPGGMVNSYGLCASQLARI 182

Query: 94  KNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           ++R   +T     +AAS GYL++  ++ IVAA  S +GSIGV+   P  +  LDK  V  
Sbjct: 183 RDRGIKLTCTVDSVAASGGYLMASVADHIVAAPFSYIGSIGVIAGIPNFRKVLDKYDVEY 242

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
           + + +   K   S   E   +  +  ++ +++ +  F   V + R  P+     ++ G  
Sbjct: 243 EQITAGKYKRTLSMLGENTQEGRKKFKEELEAIHARFKEQVQKYR--PFINIDEVATGEY 300

Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
           W  ++A K+ L+D +   +E      A     +++ +      ++      + + +  + 
Sbjct: 301 WLASDALKLKLVDEIATSDEYISKKVAQTYGCALQIMCARKQKRSLLSKLKQLILLKHIK 360

Query: 273 EDTIPLMKQTKVQGL 287
            D   L+   K    
Sbjct: 361 SDIGKLLLSAKDDEF 375


>gi|213971971|ref|ZP_03400069.1| bacteriophage-related protein [Pseudomonas syringae pv. tomato T1]
 gi|213923286|gb|EEB56883.1| bacteriophage-related protein [Pseudomonas syringae pv. tomato T1]
          Length = 381

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 18/225 (8%)

Query: 29  SHVEDNSPHVARIAIRGQ----------IEDSQE---LIERIERISRDDSATALIVSLSS 75
           S        VA I + G           I  +     L   ++    D +  ++I+++ S
Sbjct: 18  SRTVSVRNGVAIIPVVGPVFRYANLFTEISGATSTQVLATDLQSALDDPNIKSIILNIDS 77

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           PGG A     +   I   + RK ++  V    ASA Y ++ A++ IV  ET+L+GSIGV+
Sbjct: 78  PGGVAAGINELADQIHAGRARKSIVAYVGGTGASAAYWLASAASEIVIDETALLGSIGVV 137

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
            +                  +++P K           +    + + VD+    FV  V+ 
Sbjct: 138 VEAVVEGEASSGRKRYQIVSRNAPNKRLDMA----TEEGRAKVGETVDAMGEVFVAKVAR 193

Query: 196 SRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
           +  +  D    + D G +  GA A + GL   +G  E +   L  
Sbjct: 194 NLGVASDAVPAMGDFGGLRVGAAAVESGLAHRLGSLEGLITELAK 238


>gi|301306894|ref|ZP_07212941.1| peptidase, S49 family protein [Escherichia coli MS 124-1]
 gi|300837903|gb|EFK65663.1| peptidase, S49 family protein [Escherichia coli MS 124-1]
          Length = 239

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 79/173 (45%), Gaps = 13/173 (7%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 67  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +V++ KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +    
Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
             L+K GV I  + S   K + +P+S +     + +Q  +D++   F + VS 
Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSA 239


>gi|256841934|ref|ZP_05547439.1| signal peptide peptidase SppA, 36K type [Parabacteroides sp. D13]
 gi|256736250|gb|EEU49579.1| signal peptide peptidase SppA, 36K type [Parabacteroides sp. D13]
          Length = 294

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 13/221 (5%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDSQE-------LIER--IERISRDDSATALIVSLSSPG 77
           WS   +     VA + I G I    +       L +   + R   +++  A+++++ S G
Sbjct: 73  WSPPEDAPKNSVAIMNINGAITKYDQECGPSGMLTKANLLNRCYNENNIKAIVLNIDSGG 132

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET-SLVGSIGVLF 136
           G       +  AI      KPV+   ++  ASA Y I+   + IVA      +GS+G   
Sbjct: 133 GEGMGCRIMQEAIN--SRNKPVVAFCNDFVASAAYGIASCCDKIVANSNVCRIGSVGTYM 190

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                  +  K+G+ +  + +S    +   F +      + ++ V D+    F+  ++ +
Sbjct: 191 TIVDTSEYYAKMGIKLIDIYASKSTDKNQEFHKALQGDTEPLKKVCDTYNENFISSIANA 250

Query: 197 R-NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           R  +  +     + G+++   EA  +G+ID +   E V   
Sbjct: 251 RVGVINEDQGKWATGKMFFAPEAMDIGMIDEIDTFENVLNY 291


>gi|221369919|ref|YP_002521015.1| Peptidase U7 [Rhodobacter sphaeroides KD131]
 gi|221162971|gb|ACM03942.1| Peptidase U7 [Rhodobacter sphaeroides KD131]
          Length = 477

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 74/180 (41%), Gaps = 13/180 (7%)

Query: 36  PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A I I G +                + +  +I+  + D +   L + + S GG    
Sbjct: 80  DGIAVIEIAGVLIHRGGWIGQSSGQTSYEGIAAQIKAAASDPAVRGLALEIDSFGGEVAG 139

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
              +   I+ ++  KPV   V E A SAGY ++  ++ I+   T  +GSIGV+  +  + 
Sbjct: 140 VFDLADRIRAIRGAKPVWAFVAEHALSAGYALASQADRILLPRTGALGSIGVVVLHADLS 199

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LD+ GV +  + S   K + +P+  +       +Q  +D     F   V+  R+    
Sbjct: 200 GKLDQDGVRVTLIHSGQHKVDGNPYQPLPEAVQGDIQREIDVLRFLFAETVAAGRSGKIS 259


>gi|301385640|ref|ZP_07234058.1| hypothetical phage-related protein [Pseudomonas syringae pv. tomato
           Max13]
          Length = 410

 Score = 73.1 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 18/225 (8%)

Query: 29  SHVEDNSPHVARIAIRGQ----------IEDSQE---LIERIERISRDDSATALIVSLSS 75
           S        VA I + G           I  +     L   ++    D +  ++I+++ S
Sbjct: 47  SRTVSVRNGVAIIPVVGPVFRYANLFTEISGATSTQVLATDLQSALDDPNIKSIILNIDS 106

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           PGG A     +   I   + RK ++  V    ASA Y ++ A++ IV  ET+L+GSIGV+
Sbjct: 107 PGGVAAGINELADQIHAGRARKSIVAYVGGTGASAAYWLASAASEIVIDETALLGSIGVV 166

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
            +                  +++P K           +    + + VD+    FV  V+ 
Sbjct: 167 VEAVVEGEASSGRKRYQIVSRNAPNKRLDMA----TEEGRAKVGETVDAMGEVFVAKVAR 222

Query: 196 SRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
           +  +  D    + D G +  GA A + GL   +G  E +   L  
Sbjct: 223 NLGVASDAVPAMGDFGGLRVGAAAVESGLAHRLGSLEGLITELAK 267


>gi|302061402|ref|ZP_07252943.1| hypothetical phage-related protein [Pseudomonas syringae pv. tomato
           K40]
          Length = 410

 Score = 73.1 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 18/225 (8%)

Query: 29  SHVEDNSPHVARIAIRGQ----------IEDSQE---LIERIERISRDDSATALIVSLSS 75
           S        VA I + G           I  +     L   ++    D +  ++I+++ S
Sbjct: 47  SRTVSVRNGVAIIPVVGPVFRYANLFTEISGATSTQVLATDLQSALDDPNIKSIILNIDS 106

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           PGG A     +   I   + RK ++  V    ASA Y ++ A++ IV  ET+L+GSIGV+
Sbjct: 107 PGGVAAGINELADQIHAGRARKSIVAYVGGTGASAAYWLASAASEIVIDETALLGSIGVV 166

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
            +                  +++P K           +    + + VD+    FV  V+ 
Sbjct: 167 VEAVVEGEASSGRKRYQIVSRNAPNKRLDMA----TEEGRAKVGETVDAMGEVFVAKVAR 222

Query: 196 SRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
           +  +  D    + D G +  GA A + GL   +G  E +   L  
Sbjct: 223 NLGVASDAVPAMGDFGGLRVGAAAVESGLAHRLGSLEGLITELAK 267


>gi|320326645|gb|EFW82694.1| hypothetical phage-related protein [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 410

 Score = 73.1 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 88/225 (39%), Gaps = 18/225 (8%)

Query: 29  SHVEDNSPHVARIAIRGQ----------IEDSQE---LIERIERISRDDSATALIVSLSS 75
           S        VA I + G           I  +     L   ++    D S  ++I+++ S
Sbjct: 47  SRTVSVRNGVAIIPVVGPVFRYANLFTEISGATSTQVLATDLQSALDDPSIKSIILNIDS 106

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           PGG A     +   I   + RK ++  V    ASA Y ++ A++ IV  ET+L+GSIGV+
Sbjct: 107 PGGVAAGINELADQIHAGRARKRIVAYVGGTGASAAYWLASAASEIVIDETALLGSIGVV 166

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
            +                  +++P K           +    + + VD+    FV  V+ 
Sbjct: 167 VEAVVEGEASSGRKRYQIVSRNAPNKRLDMA----TEEGRAKVGETVDAMGEVFVAKVAR 222

Query: 196 SRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
           +  +  D    + D G +  GA A + GL   +G  E +   L  
Sbjct: 223 NLGVASDDVPAMGDFGGLRVGAAAVESGLAHRLGSLEGLITELAK 267


>gi|28952049|ref|NP_240107.2| putative periplasmic protease [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219682205|ref|YP_002468589.1| possible protease SohB [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|11387171|sp|P57370|SOHB_BUCAI RecName: Full=Probable protease sohB
 gi|219621938|gb|ACL30094.1| possible protease SohB [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311086594|gb|ADP66675.1| putative periplasmic protease [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 336

 Score = 73.1 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 96/231 (41%), Gaps = 11/231 (4%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAAS 109
           +E+   +   ++ D    +++ L S GG  +        + +++ +    I  V ++AAS
Sbjct: 111 EEISAILLVANKHDE---VLLRLESSGGVIHGYGLAASQLNRLRQKGIRLIVSVDKIAAS 167

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
            GY+++C ++ IV+A  +++GSIGV+ Q P     L K  +  +   +   K   + F  
Sbjct: 168 GGYMMACVADYIVSAPFAIIGSIGVVGQIPNFNKLLKKCNIDFELHTAGDYKRTLTMFGN 227

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
                 +   D +++++  F   + E R  P      +S+G  W G  A +  L+D +G 
Sbjct: 228 NTESTRKKFCDELNTTHKLFKSFIKEMR--PSLDIEDVSNGEHWFGTIALEKKLVDQIGT 285

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            +++      +   +    ++     +             +L E  + +  
Sbjct: 286 SDDIL-----ISKMEEYTLLRIQYIYRKKILERFTASVTHNLSETLLKIFF 331


>gi|25403581|pir||A84963 probable proteinase sohB [imported] - Buchnera sp. (strain APS)
 gi|10038958|dbj|BAB12993.1| possible protease sohB [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|311086020|gb|ADP66102.1| putative periplasmic protease [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311087177|gb|ADP67257.1| putative periplasmic protease [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087706|gb|ADP67785.1| putative periplasmic protease [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 362

 Score = 73.1 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 96/231 (41%), Gaps = 11/231 (4%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAAS 109
           +E+   +   ++ D    +++ L S GG  +        + +++ +    I  V ++AAS
Sbjct: 137 EEISAILLVANKHDE---VLLRLESSGGVIHGYGLAASQLNRLRQKGIRLIVSVDKIAAS 193

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
            GY+++C ++ IV+A  +++GSIGV+ Q P     L K  +  +   +   K   + F  
Sbjct: 194 GGYMMACVADYIVSAPFAIIGSIGVVGQIPNFNKLLKKCNIDFELHTAGDYKRTLTMFGN 253

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
                 +   D +++++  F   + E R  P      +S+G  W G  A +  L+D +G 
Sbjct: 254 NTESTRKKFCDELNTTHKLFKSFIKEMR--PSLDIEDVSNGEHWFGTIALEKKLVDQIGT 311

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            +++      +   +    ++     +             +L E  + +  
Sbjct: 312 SDDIL-----ISKMEEYTLLRIQYIYRKKILERFTASVTHNLSETLLKIFF 357


>gi|304413780|ref|ZP_07395224.1| S49 family peptidase [Candidatus Regiella insecticola LSR1]
 gi|304283871|gb|EFL92265.1| S49 family peptidase [Candidatus Regiella insecticola LSR1]
          Length = 348

 Score = 73.1 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 113/267 (42%), Gaps = 18/267 (6%)

Query: 29  SHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAYA 82
           +      P +  +  +G I+        +E+   +   ++ D    +++ L SPGG  + 
Sbjct: 93  NTTATAKPCLYVLDFKGSIDAHEVSSLREEISAILAVATKQDE---VLLRLESPGGVVHG 149

Query: 83  GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + +++     +   V ++AAS GY+++C ++ +V+A  +++GSIGV+ Q P  
Sbjct: 150 YGLAASQLVRLQQAGIHLTVAVDKIAASGGYMMACVADRVVSAPFAIIGSIGVVAQIPNF 209

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
             +L K  + I+   +   K   + F E   +  +  ++ ++ ++  F + + +   +P 
Sbjct: 210 NRWLRKNNIDIELHTAGEFKRTLTLFGENTEQGREKFREELNETHLLFKQFIKQR--LPQ 267

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                ++ G  W G  AK+ GL+D +   +E+   +  +       ++      +     
Sbjct: 268 LDIDTVATGEHWFGITAKEKGLVDAIESSDELL--IAKMA----QHEVISVKYSRRKRLI 321

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288
           D    S++   +  +    Q   + L 
Sbjct: 322 DRFTGSVAKNADRLLLRWWQRSEKPLI 348


>gi|163804098|ref|ZP_02197885.1| protease IV [Vibrio sp. AND4]
 gi|159172087|gb|EDP57039.1| protease IV [Vibrio sp. AND4]
          Length = 160

 Score = 72.7 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
            +++ IVA  T+L GSIG+       +   +KLG+S   V +SP  +     + ++  A 
Sbjct: 1   MSADKIVAQPTTLTGSIGIFSVITTFEKGFNKLGISTDGVGTSPF-SGDGITTGLSDGAS 59

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           Q  Q  ++  Y  F+ LV  +R +  ++   ++ GR+WTG +A   GL+D +G  ++  Q
Sbjct: 60  QAFQLGIEHGYKRFISLVGSNREMSLEEVDKVAQGRVWTGQDAMSFGLVDQMGDFDDAVQ 119

Query: 236 SLYALGVDQSI--RKIKDWNPPKNYWFCDLKNLSISSLLED 274
               L   ++     +++   P   +  +  N    SL  D
Sbjct: 120 LAAKLAEVENYQLYWVEEPLSPAEQFVQEFMNQVKVSLGID 160


>gi|71019091|ref|XP_759776.1| hypothetical protein UM03629.1 [Ustilago maydis 521]
 gi|46099216|gb|EAK84449.1| hypothetical protein UM03629.1 [Ustilago maydis 521]
          Length = 949

 Score = 72.3 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 91/197 (46%), Gaps = 11/197 (5%)

Query: 31  VEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
            +D    V  + + G I  +        +++ ++  +      ++++ + S GG   A E
Sbjct: 377 SDDEVERVGVVYLLGGISSAPGEFSTSSVLKGLKEAAEHKDIKSIVLRIDSGGGDVVASE 436

Query: 85  AIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           +I+ A+++V+    KPV+      AAS GY  + A++ I+A E ++ GSIGV    P + 
Sbjct: 437 SIWDAVRRVREDYGKPVVASFGNTAASGGYYAASAADAILACENTVTGSIGVASLRPTIT 496

Query: 143 P-FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
             F DK  + I++  +       S   E++          +D  Y  F++ V + R+I  
Sbjct: 497 RAFFDKFNIGIQTFFT--ASTSQSTLHELDEAQQAKSAKHIDEMYDEFLQKVCDGRSISR 554

Query: 202 DKTLVLSDGRIWTGAEA 218
           +    L+ GR+ TG  A
Sbjct: 555 EVVENLAGGRVMTGLSA 571



 Score = 61.9 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 77/252 (30%), Gaps = 28/252 (11%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGG---------SAYAGEAIFRAIQKVKNRKPV--- 99
           E+I  ++    DD    ++   S                  E + +AI + K  K     
Sbjct: 133 EVIRALKWAQADDRIKGILADFSGLHLPSSVTPNRLGLAQIEELMQAIHEFKIAKKQQHG 192

Query: 100 ------ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
                 I       +   +L++ A + +       +   G+  Q P+ K  LD  G+ + 
Sbjct: 193 DKARPSIAWADTFNSQGSFLLASAFDELWMQPAGSIPLTGLSAQIPFFKKVLDYFGIRVL 252

Query: 154 SVKSSPMKAEPSPF---SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD------KT 204
           +      K+  S F     +    +    +++       V  ++ +R    D      K 
Sbjct: 253 AEARREYKSMISTFSREDSLTAPQIHNEAELLGELNRGLVHAIAVNRFPDEDPELTSSKV 312

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA-LGVDQSIRKIKDWNPPKNYWFCDL 263
                   ++  EA ++GLI+    + ++ + L           K K  +         L
Sbjct: 313 EAWMKQGPFSTREATQLGLINGAAFKRDIIKRLIDPKHGGNDETKFKSLHHYNKINDRHL 372

Query: 264 KNLSISSLLEDT 275
                   +E  
Sbjct: 373 DRQLSDDEVERV 384


>gi|126729086|ref|ZP_01744900.1| probable bacteriophage-related protein [Sagittula stellata E-37]
 gi|126710076|gb|EBA09128.1| probable bacteriophage-related protein [Sagittula stellata E-37]
          Length = 340

 Score = 72.3 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 1/171 (0%)

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           S GG       +   I   +  KP+       A  A Y  +  ++ I    +  VGSIGV
Sbjct: 16  SGGGLVDGCFELNDKIYARRGEKPIRAFADSYAYIAAYATASVADSITVTRSGGVGSIGV 75

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +  +      LD  GV++  ++S P KAE  P+  ++  A   MQ  VD S+  FV LV+
Sbjct: 76  IITHVEYSCALDTRGVTVTPIRSKPRKAESGPYQALSKAAQAKMQASVDFSHSEFVALVA 135

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
            +R +         D   +   EA + GL D +G  ++   +  A   D  
Sbjct: 136 RNRGMSEADVDAT-DALTFLAHEAVENGLADQIGSTDDALAAFAASFNDPD 185


>gi|332829802|gb|EGK02444.1| hypothetical protein HMPREF9455_01401 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 304

 Score = 72.3 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 86/230 (37%), Gaps = 10/230 (4%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQI--------EDSQELIERIERISRDDSATALIVSLSS 75
           Y       + +   VA I I G +            ++ + I       +    I+  ++
Sbjct: 67  YIQKDPFADLDENSVAIIPIIGSMFKYSSWWSYGMDDIADLIRLADASPNIIGTILLCNT 126

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           PGG++ +   +  A++  + +  V        +   Y +S    +       ++G+IGV 
Sbjct: 127 PGGTSQSIIQLEDAMRN-RTKPSVGLIDGHCCSGGIYALSFCDRLTATNPMCVIGNIGVY 185

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP-KAVQMMQDVVDSSYHWFVRLVS 194
            Q      + +  GV   SV     K +   ++E        ++++ +      F  ++ 
Sbjct: 186 NQIINDDKWYENQGVEFISVYPPESKYKNLAYTEAKNGNTKILIEESLSPFAIHFQNIIK 245

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           ++R         + +G+ +   +A+K GLID +   E   + L  L  ++
Sbjct: 246 QNRPNLDLSVEGIIEGKDFYAQDAEKNGLIDAITNLEGAVKLLRILHTEK 295


>gi|257471337|ref|ZP_05635336.1| putative periplasmic protease [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
          Length = 362

 Score = 72.3 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 97/231 (41%), Gaps = 11/231 (4%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAAS 109
           +E+   +   ++ D    +++ L S GG  +        + +++ +    I  V ++AAS
Sbjct: 137 EEISAILLVANKHDE---VLLRLESSGGVIHGYGLAASQLNRLRQKGIRLIVSVDKIAAS 193

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
            GY+++C ++ IV+A  +++GSIGV+ Q P     L K  + ++   +   K   + F  
Sbjct: 194 GGYMMACVADYIVSAPFAIIGSIGVVGQIPNFNKLLKKCNIDLELHTAGDYKRTLTMFGN 253

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
                 +   D +++++  F   + E R  P      +S+G  W G  A +  L+D +G 
Sbjct: 254 NTESTRKKFCDELNTTHKLFKSFIKEMR--PSLDIEDVSNGEHWFGTIALEKKLVDQIGT 311

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            +++      +   +    ++     +             +L E  + +  
Sbjct: 312 SDDIL-----ISKMEEYTLLRIQYIYRKKILERFTASVTHNLSETLLKIFF 357


>gi|145350683|ref|XP_001419729.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579961|gb|ABO98022.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 234

 Score = 72.0 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 100/215 (46%), Gaps = 10/215 (4%)

Query: 30  HVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           + +    HV  +   G +  S      +E+   +    + +    +++ L++ GG+    
Sbjct: 9   NSKIKKKHVFVLNFFGDVRASQAEQLREEVTGLLRSAKK-ERGDEVVLRLNTGGGTVTGY 67

Query: 84  EAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                 + ++K+    +   V ++AAS GY+++C ++ IVA+  +++GSIGV+ + P V 
Sbjct: 68  GLAAAQLMRIKDAGLKLTICVEQVAASGGYMMACVADEIVASPFAVLGSIGVISEQPNVY 127

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L + G+  ++V +   K   +P  +V  + ++  +  ++     F   V+E+R  P  
Sbjct: 128 ERLQREGIEFQTVTAGKFKRTLTPTKKVTEEDLEKSKKDIEDVLVLFKGFVAENR--PTL 185

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
               ++ G  W G +A    L+D +   ++V   L
Sbjct: 186 DIDNVATGETWFGKDALSRNLVDKLKTSDDVLLDL 220


>gi|222086932|ref|YP_002545466.1| protease protein [Agrobacterium radiobacter K84]
 gi|221724380|gb|ACM27536.1| protease protein [Agrobacterium radiobacter K84]
          Length = 409

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 82/202 (40%), Gaps = 4/202 (1%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            I G     Q L + ++    D +  ++ + + SPGG A   +     +      KPV  
Sbjct: 76  EISGA-TSYQTLAKDLQVALDDRALHSIAMLIDSPGGEANGADEFAAMVNAANKVKPVTA 134

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
            V  M ASA Y I+ A+  IV +E S+VGSIGV+         L      ++ ++    +
Sbjct: 135 FVSGMGASAAYWIASAAGRIVLSEGSMVGSIGVVLGINDTT--LADERRGVRKLQFVSSQ 192

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKK 220
           +               +Q +VDS    F+  V+  R +           G +  GAEA  
Sbjct: 193 SPNKRPDPNTEDGKSHIQAMVDSLASVFISKVAAYRGVSQADVIAKFGGGGMKVGAEAVN 252

Query: 221 VGLIDVVGGQEEVWQSLYALGV 242
            G+ D VG  E+V  ++   G 
Sbjct: 253 AGMADEVGQFEDVLATMIQRGK 274


>gi|77465783|ref|YP_355286.1| serine peptidase [Rhodobacter sphaeroides 2.4.1]
 gi|77390201|gb|ABA81385.1| protein C. Serine peptidase. MEROPS family S49 [Rhodobacter
           sphaeroides 2.4.1]
          Length = 448

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 13/185 (7%)

Query: 38  VARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           VA I + G +                + L+ +I     D S   + + + S GG      
Sbjct: 86  VAVIEVTGTLVHRGGWIGQSSGTTSYEGLMAQISAAVADPSVRGIALEIDSYGGEVAGLF 145

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +  AI+  +  KPV   V E A SA Y I+  +  IV   T  VGSIGVL  +      
Sbjct: 146 DLADAIRAARAVKPVRAFVAEAALSAAYAIASQAERIVLPRTGAVGSIGVLLVHADFSQA 205

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           +   GV++  + +   K + +P+  +       +Q  V++S   F   V+  R     + 
Sbjct: 206 MADRGVAVTLIHAGRHKVDGNPYEALPEGVRADLQARVEASRALFAETVAAGRGARLSRQ 265

Query: 205 LVLSD 209
             L+ 
Sbjct: 266 QALAT 270


>gi|219681648|ref|YP_002468034.1| possible protease SohB [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|219624491|gb|ACL30646.1| possible protease SohB [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 336

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 97/231 (41%), Gaps = 11/231 (4%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAAS 109
           +E+   +   ++ D    +++ L S GG  +        + +++ +    I  V ++AAS
Sbjct: 111 EEISAILLVANKHDE---VLLRLESSGGVIHGYGLAASQLNRLRQKGIRLIVSVDKIAAS 167

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
            GY+++C ++ IV+A  +++GSIGV+ Q P     L K  + ++   +   K   + F  
Sbjct: 168 GGYMMACVADYIVSAPFAIIGSIGVVGQIPNFNKLLKKCNIDLELHTAGDYKRTLTMFGN 227

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
                 +   D +++++  F   + E R  P      +S+G  W G  A +  L+D +G 
Sbjct: 228 NTESTRKKFCDELNTTHKLFKSFIKEMR--PSLDIEDVSNGEHWFGTIALEKKLVDQIGT 285

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            +++      +   +    ++     +             +L E  + +  
Sbjct: 286 SDDIL-----ISKMEEYTLLRIQYIYRKKILERFTASVTHNLSETLLKIFF 331


>gi|307609646|emb|CBW99151.1| hypothetical protein LPW_09361 [Legionella pneumophila 130b]
          Length = 197

 Score = 71.6 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 84/169 (49%), Gaps = 4/169 (2%)

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
           + SPGG+          +Q+++++K      + +MAAS GYL++C +N I+AA  +++GS
Sbjct: 1   MESPGGAVNGYGLAASQLQRIRDKKIPLTVSIDKMAASGGYLMACVANKIIAAPFAIIGS 60

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
           IGV+ Q P    +L K  + ++ + +   K   + F+E   K  +  Q+ ++  +  F  
Sbjct: 61  IGVVAQIPNFHRWLKKNNIDVELLTAGEYKRTLTLFAENTEKGRKKFQEDLEKIHTAFRE 120

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE-VWQSLYA 239
            V ++R         ++ G  W   +A  + L+D +   +E + + +  
Sbjct: 121 YVLKNR--SQLDIDKVATGEHWIAKDAFDLRLVDKLATSDEYLIEKMAE 167


>gi|221369846|ref|YP_002520942.1| Protein C. Serine peptidase. MEROPS family S49 [Rhodobacter
           sphaeroides KD131]
 gi|221162898|gb|ACM03869.1| Protein C. Serine peptidase. MEROPS family S49 [Rhodobacter
           sphaeroides KD131]
          Length = 447

 Score = 71.6 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 13/185 (7%)

Query: 38  VARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           VA I + G +                + L+ +I     D S   + + + S GG      
Sbjct: 86  VAVIEVTGTLVHRGGWIGQSSGTTSYEGLMAQITAAVADPSVRGIALEIDSYGGEVAGLF 145

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +  AI+  +  KPV   V E A SA Y I+  +  IV   T  VGSIGVL  +      
Sbjct: 146 DLADAIRAARAVKPVRAFVAEAALSAAYAIASQAERIVLPRTGAVGSIGVLLVHADFSQA 205

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           +   GV++  + +   K + +P+  +       +Q  V++S   F   V+  R     + 
Sbjct: 206 MADRGVAVTLIHAGRHKVDGNPYEALPEGVRADLQARVEASRALFAETVAAGRGARLSRQ 265

Query: 205 LVLSD 209
             L+ 
Sbjct: 266 QALAT 270


>gi|319411923|emb|CBQ73966.1| related to Signal peptide peptidase [Sporisorium reilianum]
          Length = 939

 Score = 71.6 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 90/191 (47%), Gaps = 11/191 (5%)

Query: 37  HVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            V  + + G I  +        +++ ++  +  +   ++++ + S GG   + E+I+ A+
Sbjct: 378 QVGVVYLLGGISSAPGEFSTSSVLKGLKEAAEHEDIKSIVLRIDSGGGDVVSSESIWDAV 437

Query: 91  QKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP-FLDK 147
           ++V+    KPV+      AAS GY  + A++ I+A E ++ GSIGV    P +   F D+
Sbjct: 438 RRVREDYGKPVVASFGNAAASGGYYAASAADAILACENTVTGSIGVASLRPTITRAFFDR 497

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
             + I+S  +       S   +++          +D  Y  F++ V + R+I  D    L
Sbjct: 498 FNIGIQSFFTGS--TSQSTLHDLDEAQRAKSAKHIDEMYGDFLQKVCDGRSISRDIIESL 555

Query: 208 SDGRIWTGAEA 218
           + GR+ TG  A
Sbjct: 556 AGGRVMTGLSA 566



 Score = 56.5 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 72/215 (33%), Gaps = 27/215 (12%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGG---------SAYAGEAIFRAIQKVKNRKPV--- 99
           E+I  ++    D+    +    S                  E + +AI + K  K     
Sbjct: 128 EVIRALKWAQADERIKGIFADFSGLHLPSSVTPNRLGLAQIEELMQAIHEFKLAKKQQHG 187

Query: 100 ------ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
                 I       +   +L++ A + +       V   G+  Q P+ K  LD  G+ + 
Sbjct: 188 ESARPSIAWADTFNSQGSFLLASAFDELWMQPAGSVPLTGLGAQIPFFKKVLDYFGIRVL 247

Query: 154 SVKSSPMKAEPSPF---SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD------KT 204
           +      K+  S F     +    +Q   +++       V  V+ +R    D      K 
Sbjct: 248 AEARREYKSMISTFSREDSLPAPQIQNEAELLGELNRGLVHAVAVNRYPDQDPDVVSRKV 307

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
                   ++  EAK++GLI+    + ++ + L  
Sbjct: 308 EAWMKDGPFSTREAKELGLINGAAFKRDIIKRLVD 342


>gi|292492693|ref|YP_003528132.1| peptidase S49 domain protein [Nitrosococcus halophilus Nc4]
 gi|291581288|gb|ADE15745.1| Peptidase S49 domain protein [Nitrosococcus halophilus Nc4]
          Length = 325

 Score = 71.6 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 99/243 (40%), Gaps = 12/243 (4%)

Query: 37  HVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            +  +   G I  +      +E+   +   + +D    +++ L + GG  +        +
Sbjct: 87  RIFVLDFHGDIRATAVASLREEITAVLSVATPEDE---VLLRLENGGGLVHEHGLAASQL 143

Query: 91  QKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           ++++ ++      V +MAAS GY+++C  N I+AA  +++GSIG L Q P     LDK G
Sbjct: 144 ERIRKKQIPLTIAVDKMAASGGYMMACVGNRIIAAPFAVIGSIGALMQLPNFHRLLDKHG 203

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           +  + +K+  +K   + F     +  ++ +  V+  +  F   ++  R  P       + 
Sbjct: 204 IDFEQIKAGELKRTVTLFGINTDRDRELAKKQVEDIHQLFKEFITHYR--PQVDLSQTAT 261

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           G+ W   +A+++ LID +   ++             +         + +          +
Sbjct: 262 GQHWHAIQAQELNLIDDLETSDDYLLEASKTADLYEVSYAVKKTFAERFLSRVQAASDKA 321

Query: 270 SLL 272
             L
Sbjct: 322 LGL 324


>gi|330970624|gb|EGH70690.1| peptidase S49 [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 410

 Score = 71.6 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 102/269 (37%), Gaps = 22/269 (8%)

Query: 29  SHVEDNSPHVARIAIRGQ----------IEDSQE---LIERIERISRDDSATALIVSLSS 75
           S        VA I + G           I  +     L   ++    D S  ++I+++ S
Sbjct: 47  SRTVSVRNGVAIIPVVGPVFRYANLFTEISGATSTQVLATDLQSALDDPSIKSIILNIDS 106

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           PGG A     +   I   + RK ++  V    ASA Y ++ A++ IV  ET+L+GSIGV+
Sbjct: 107 PGGVAAGINELADQIHAGRARKRIVAYVGGTGASAAYWLASAASEIVIDETALLGSIGVV 166

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
            +                  +++P K           +    + + VD+    FV  V+ 
Sbjct: 167 VEAVVEGEASSGRKRYQIVSRNAPNKRLDMA----TEEGRAKVGETVDAMGEVFVAKVAR 222

Query: 196 SRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           +  +  D    + D G +  G  A + GL   +G  E +   L       +  +++ +  
Sbjct: 223 NLGVASDAVPAMGDFGGLRVGVAAVESGLAHRLGSLEGLITELAK----PAATQLRTFTM 278

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
                   L+    +    +TI + + ++
Sbjct: 279 TTVNSTAQLREALAAGTDPNTIEIAQASQ 307


>gi|196229320|ref|ZP_03128185.1| peptidase S49 [Chthoniobacter flavus Ellin428]
 gi|196226552|gb|EDY21057.1| peptidase S49 [Chthoniobacter flavus Ellin428]
          Length = 269

 Score = 71.2 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 74/204 (36%), Gaps = 19/204 (9%)

Query: 35  SPHVARIAIRGQIE--------------DSQELIERIERISRDDSATALIVSLSSPGGSA 80
              +  I I G +               D  E+ E I      +   A+++ + SPGG+ 
Sbjct: 49  ENGIGIIPITGVLMKRPDIFSRVLLGAADMDEISEAINEAGDREDVQAVLLDIDSPGGTV 108

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                +  A+  +   K V         SA Y I+  +++I +  ++ VGSIGVL     
Sbjct: 109 TGTPELAAAVAALSRAKYVYAFSDGQMCSAAYWIASQADVIFSTPSARVGSIGVLLPMLD 168

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV-SESRNI 199
                 + G+ +    +   K+   P   +       +Q ++D     F   V +  R I
Sbjct: 169 ETEAFKQEGLKVDLFAAGKYKSVGVPGVALTDDQRTWLQSMIDEINGEFQAAVLARGRAI 228

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGL 223
                     G+ ++G +A +  L
Sbjct: 229 DPAAME----GQDFSGQKAFENSL 248


>gi|118355546|ref|XP_001011032.1| probable peptidase, putative [Tetrahymena thermophila]
 gi|89292799|gb|EAR90787.1| probable peptidase, putative [Tetrahymena thermophila SB210]
          Length = 265

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 110/253 (43%), Gaps = 12/253 (4%)

Query: 37  HVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           ++  I I   I+   +Q++   I +I  D  A A+ + ++SPGGS    + I   ++   
Sbjct: 15  YIPVIVINTGIDAKATQDVRNSIAKIDAD-RAKAVALLINSPGGSPVQCDIITEMVKGFS 73

Query: 95  NRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            +  +   T  +++AAS G  +    +   A ETSLVGS+GV+  +  +     +  +  
Sbjct: 74  KKHHLPLYTFANDIAASGGQFLLSIGDKSFAQETSLVGSVGVVGMWFGLGNLAKEYKLKP 133

Query: 153 KSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY---DKTLVL 207
           +   S+  +     + F ++ P+  + +   + + +  F+  + +  N      ++   +
Sbjct: 134 EIFSSNQEQELAYMNFFEDLTPEKKEKIIRTLKTHHKIFIEHIEKHSNYKISPEEREKKI 193

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP-KNYWFCDLKNL 266
            D  I  G +A K GL+D +G  + V    +  GV   I   + W        F  +   
Sbjct: 194 YDASIVLGKDAVKYGLVDEIGQYQSVLNRDFP-GVQIEIISSESWRQKILGSIFAKMGVS 252

Query: 267 SISSLLEDTIPLM 279
           +  S+L+  + LM
Sbjct: 253 TQESILDRNLLLM 265


>gi|167626504|ref|YP_001677004.1| periplasmic protease [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167596505|gb|ABZ86503.1| peptidase, S49 (protease IV) family protein [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 338

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 103/256 (40%), Gaps = 22/256 (8%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIV----------SLSSPGG 78
              E        I  +G I  SQ  +E +         TA++            + SPGG
Sbjct: 86  DKQEKPKQRKFIINFKGDIHASQ--VEDLRN-----EVTAILAVAVADDEVVVRIDSPGG 138

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
                      +++++     +T    ++AAS GY++S  +N I+AA  ++VGSIGV+  
Sbjct: 139 VVNGYGFAAAQLERIRQAGITLTVCIDQVAASGGYMMSVVANKIIAAPFAIVGSIGVVGT 198

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
            P ++  L+K G++++   S   K   +   E   +  +  +  +++ +  F + +   R
Sbjct: 199 VPNIRELLEKNGINVEMHTSGEFKRTLTTVGENTEEGRKKFKQDLENIHELFKKHILAYR 258

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
             P      ++ G  W G +A ++GL+D +   ++       L    S+ ++        
Sbjct: 259 --PNLDMHKVATGEYWFGKDALELGLVDEIRTYDDYLIEF--LDNHYSVYEVSYVRKKDK 314

Query: 258 YWFCDLKNLSISSLLE 273
            +      +   ++  
Sbjct: 315 GFIKSKLAMIKKTITS 330


>gi|170744988|ref|YP_001763287.1| peptidase S49 [Methylobacterium radiotolerans JCM 2831]
 gi|170659395|gb|ACB28442.1| peptidase S49 [Methylobacterium radiotolerans JCM 2831]
          Length = 374

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 13/215 (6%)

Query: 38  VARIAIRGQ-------IEDSQELIE------RIERISRDDSATALIVSLSSPGGSAYAGE 84
            A I + G        I  S  L+       ++   S+DD   A+++    PGG A    
Sbjct: 73  TAIIPVIGSTVNRGAWIGASSGLVSYEGLKFQLAHASQDDRTRAVLLDFECPGGEAVGAF 132

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
                +++V   KPV+  V+ + ASA Y ++  +  IV   + + GSIGV+  +  V   
Sbjct: 133 EAAAVVRQVAALKPVVAVVNGLCASAAYAMASGATRIVTTPSGIAGSIGVVMLHTDVSGA 192

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K GV    + +   K +  P+  +       ++  ++  Y  F+  V+  R     + 
Sbjct: 193 LAKAGVKPTLIFAGKHKTDGHPYGPLPDSVKADLRAEIEGFYAAFINCVATGRKNLTAEA 252

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
           +  ++ R + GA A   GL D VG  E     L A
Sbjct: 253 IRGTEARTFMGAAAVAAGLADEVGTFEGALVDLEA 287


>gi|153838850|ref|ZP_01991517.1| peptidase S49 [Vibrio parahaemolyticus AQ3810]
 gi|149747734|gb|EDM58634.1| peptidase S49 [Vibrio parahaemolyticus AQ3810]
          Length = 295

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 92/204 (45%), Gaps = 12/204 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
            S      PH+  +   G I+        +E+   +      D    +++ L S GG  +
Sbjct: 97  GSLDSKREPHLFVLDFNGSIDAKEVGSLREEITAILAVAREGDE---VLLRLESGGGMVH 153

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P 
Sbjct: 154 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPN 213

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E   KA    +  ++ ++  F   + E R  P
Sbjct: 214 FNKLLKKHDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHVLFKDFIRERR--P 271

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLI 224
             +   ++ G  W G +AK++GL+
Sbjct: 272 SLELEKVATGEHWFGTQAKELGLV 295


>gi|241668941|ref|ZP_04756519.1| putative periplasmic protease [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877473|ref|ZP_05250183.1| peptidase [Francisella philomiragia subsp. philomiragia ATCC 25015]
 gi|254843494|gb|EET21908.1| peptidase [Francisella philomiragia subsp. philomiragia ATCC 25015]
          Length = 338

 Score = 70.8 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 98/245 (40%), Gaps = 22/245 (8%)

Query: 40  RIAIRGQIEDSQELIERIERISRDDSATALIV----------SLSSPGGSAYAGEAIFRA 89
            I  +G I  SQ  +E +         TA++            + SPGG           
Sbjct: 97  IINFKGDIHASQ--VEDLRN-----EVTAILAVAVADDEVVVRIDSPGGVVNGYGFAAAQ 149

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
           +++++     +T   +  A++G  +  A  N I+AA  ++VGSIGV+   P ++  L+K 
Sbjct: 150 LERIRQAGITLTVCIDQVAASGGYMMSAVANKIIAAPFAIVGSIGVVGTVPNIRELLEKN 209

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           G++++   S   K   +   E   +  +  +  +++ +  F + +   R  P      ++
Sbjct: 210 GINVEMHTSGEFKRTLTTVGENTEEGRKKFKQDLENIHELFKKHILAYR--PNLDMHKVA 267

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
            G  W G +A ++GL+D +   ++       L    S+ ++         +      +  
Sbjct: 268 TGEYWFGKDALELGLVDEIRTYDDYLIEF--LDNHYSVYEVSYVRKKDKGFIKSKLAMIR 325

Query: 269 SSLLE 273
            ++  
Sbjct: 326 KTITS 330


>gi|146277791|ref|YP_001167950.1| peptidase S49 [Rhodobacter sphaeroides ATCC 17025]
 gi|145556032|gb|ABP70645.1| peptidase S49 [Rhodobacter sphaeroides ATCC 17025]
          Length = 314

 Score = 70.8 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 77/214 (35%), Gaps = 19/214 (8%)

Query: 36  PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             VA + + G I                  ++  +     D +   +++   +PGG    
Sbjct: 76  DGVAVVPVFGPIFPRANMINSSAGGTSLDAIMRDMRVALADGNVERIVMVFDTPGGVVSG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I+     KP+   V  +AASAGY ++  +  +V    + VGSIGV+      +
Sbjct: 136 LGEAAEGIR--GASKPITGFVTGIAASAGYWLASQAAELVVERAASVGSIGVVASTSRQE 193

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                   S + V S   +  P P      +    +Q+ VD+    FV  V++ R     
Sbjct: 194 GPGADGRRSYEIVSSGAPRKRPDPS---TDEGRAAIQEEVDAIEAVFVGDVAKGRKTTAT 250

Query: 203 KTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
             L     G +     A   G+ D +G  E V +
Sbjct: 251 TVLSSFGRGAMVPAGAAIDAGMADRIGTLESVLR 284


>gi|6723247|dbj|BAA89643.1| gp18 [Wolbachia phage WO]
          Length = 350

 Score = 70.8 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 97/218 (44%), Gaps = 14/218 (6%)

Query: 31  VEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPG 77
           V++N    A I I G              +   +++ E IE    D+    +++ + SPG
Sbjct: 42  VKNNIEKTAIIPIHGILTKKPEAFDDFLGMTSYEKMQEEIEEALEDEKVEIILLDIDSPG 101

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G       +   I   +++K +I   ++ A SA Y I+ ++  I    TS VGSIGV+  
Sbjct: 102 GEVNGIFDLADFIYNARSKKRIIAIANDDAYSAAYAIASSAEKIFLTRTSGVGSIGVIAS 161

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +     F +K G+   ++ +   K + +P   +  ++++ ++  V+  Y   V L++ +R
Sbjct: 162 HIDQSGFDEKQGIKYSTIFAGSRKNDLNPHEPITSESLENLKSEVNRLYGMLVELIARNR 221

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           ++  +       G  + G +A ++GL D V    E   
Sbjct: 222 SLSIEAIKSTEAGLYF-GEKAVEIGLADGVTTFFEFIN 258


>gi|224135353|ref|XP_002322052.1| predicted protein [Populus trichocarpa]
 gi|222869048|gb|EEF06179.1| predicted protein [Populus trichocarpa]
          Length = 212

 Score = 70.8 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 69/164 (42%), Gaps = 3/164 (1%)

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE-PSPFSEVNP 172
           ++ A++ IVA   +L GSIGV+     +    +K+G + + +          +    + P
Sbjct: 1   MAMAADTIVAENLTLTGSIGVVTGKFSLGKLYEKIGFNKEIISRGKYAELLAADQRPLRP 60

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
              ++      ++Y  F    + SR++P DK   ++ GR+WTG +A   GL+D +GG   
Sbjct: 61  DEAELFAKSAQNAYEQFRDKAAFSRSMPVDKMEEVAQGRVWTGQDAASRGLVDAIGGFSR 120

Query: 233 VWQSLYALGVDQSIRKI--KDWNPPKNYWFCDLKNLSISSLLED 274
                         R++   + + P       L  +  S +  +
Sbjct: 121 AVAIAKQKANIPQDRQVMLVELSRPSPTLPEILSGIGSSVVGAE 164


>gi|251780299|ref|ZP_04823219.1| Clp protease family protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243084614|gb|EES50504.1| Clp protease family protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 232

 Score = 70.4 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 80/228 (35%), Gaps = 39/228 (17%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73
             ++     +  +  ++I GQIE              + +I ++  + ++D+   +++ L
Sbjct: 29  FGNTAPVTPNKSIQVLSIIGQIEGHMVLPPQTKATRYEHIIPQLIDLEQNDNVKGVLIVL 88

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           ++ GG   AG AI   I+ +   KP ++ V     S G  ++ AS+      ++ +    
Sbjct: 89  NTVGGDVEAGLAIAEMIRSM--SKPTVSIVTGGGHSIGVPLATASDYSFITPSATMIVHP 146

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V      +                                  +M + + +          
Sbjct: 147 VRMNGFIIGVAQTF------------------------EYFKKMQERINEFITRTSHIKE 182

Query: 194 SESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
            E          +L+D G I  G +A + GLID VGG +E    L  L
Sbjct: 183 EELEKFMLQTNELLNDVGTILIGKQAVECGLIDEVGGIKEALAKLKEL 230


>gi|332560534|ref|ZP_08414852.1| Protein C, Serine peptidase, MEROPS family S49 [Rhodobacter
           sphaeroides WS8N]
 gi|332274332|gb|EGJ19648.1| Protein C, Serine peptidase, MEROPS family S49 [Rhodobacter
           sphaeroides WS8N]
          Length = 448

 Score = 70.4 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 13/185 (7%)

Query: 38  VARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           VA I + G +                + L+ +I     D S   + + + S GG      
Sbjct: 86  VAVIEVTGTLVHRGGWIGQSSGTTSYEGLMAQITAAVADPSVHGIALEIDSYGGEVAGLF 145

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +  AI+  +  KPV   V E A SA Y I+  +  IV   T  VGSIGVL  +      
Sbjct: 146 DLADAIRAARAVKPVRAFVAEAALSAAYAIASQAERIVLPRTGAVGSIGVLLVHADFSQA 205

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           +   GV++  + +   K + +P+  +       +Q  V++S   F   V+  R     + 
Sbjct: 206 MADRGVAVTLIHAGRHKVDGNPYEALPEGVRADLQARVEASRGLFAETVAAGRGARLSRQ 265

Query: 205 LVLSD 209
             L+ 
Sbjct: 266 QALAT 270


>gi|188589517|ref|YP_001920628.1| Clp protease [Clostridium botulinum E3 str. Alaska E43]
 gi|188499798|gb|ACD52934.1| Clp protease family protein [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 232

 Score = 70.4 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 80/228 (35%), Gaps = 39/228 (17%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73
             ++     +  +  ++I GQIE              + +I ++  + ++D+   +++ L
Sbjct: 29  FGNTAPVTPNKSIQVLSIIGQIEGHMVLPPQTKATRYEHIIPQLIDLEQNDNVKGVLIVL 88

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           ++ GG   AG AI   I+ +   KP ++ V     S G  ++ AS+      ++ +    
Sbjct: 89  NTVGGDVEAGLAIAEMIRSM--SKPTVSIVTGGGHSIGVPLATASDYSFITPSATMIVHP 146

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V      +                                  +M + + +          
Sbjct: 147 VRMNGFIIGVAQTF------------------------EYFKKMQERINEFITRTSHIKE 182

Query: 194 SESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
            E          +L+D G I  G +A + GLID VGG +E    L  L
Sbjct: 183 EELEKFMLQTNELLNDVGTILIGKQAVECGLIDEVGGIKEALAKLKEL 230


>gi|2499883|sp|Q44600|SOHB_BUCSC RecName: Full=Probable protease sohB
 gi|769834|gb|AAA92792.1| Soh B protease [Buchnera aphidicola]
          Length = 305

 Score = 70.4 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 12/210 (5%)

Query: 32  EDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
             N+P +  +  +G +  S+      E+   I     +D    +++ L S GG  +    
Sbjct: 98  NQNNPILYVLDFKGNVSASEVTSLREEISAIILAAKENDE---VLLRLESGGGVIHGYGL 154

Query: 86  IFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
               + +++ +       V ++AAS GY+++C +N I+AA  S++GSIGV+ Q P     
Sbjct: 155 ASSQLSRLREKNIRLTVSVDKIAASGGYMMACVANYIIAAPFSVIGSIGVVAQIPNFNKL 214

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K  V ++   S   K   + F E   +A +     ++ ++  F   V   R  P    
Sbjct: 215 LKKNNVDMELHTSGLYKRTLTVFGENTKEAREKFCKDLNFTHVLFKEFVHSMR--PSLNI 272

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
             +S G  W G  A +  LID +   ++  
Sbjct: 273 DEVSTGEHWFGTTALEKKLIDKIETSDDFI 302


>gi|254671315|emb|CBA08708.1| serine protease [Neisseria meningitidis alpha153]
          Length = 204

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 11/160 (6%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57
           K I      L LV L    F           N+PH A + + G+I +  ++ ++++    
Sbjct: 45  KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK---PVITEVHEMAASAGYLI 114
           E   ++  A A+++  +SPGGS       F  I+++K +    PV     +M AS  Y I
Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
           + A++ I A  +S+VGSIGV+           K     + 
Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGPDGKNRRETQG 204


>gi|255088643|ref|XP_002506244.1| predicted protein [Micromonas sp. RCC299]
 gi|226521515|gb|ACO67502.1| predicted protein [Micromonas sp. RCC299]
          Length = 342

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 103/232 (44%), Gaps = 12/232 (5%)

Query: 34  NSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           + PHV  +   G +  S      +E+   +    +      +++ L++ GG+        
Sbjct: 5   DKPHVFVLQFFGDVRASQASNLREEVTAVLRSAKK-SRGDEVVLVLNTGGGTVTGYGLAA 63

Query: 88  RAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
             + ++K+    +T    ++AAS GY+++C ++ +VA+  +++GSIGV+ + P V   L 
Sbjct: 64  AQLTRLKDAGIKLTICVEQVAASGGYMMACTADRLVASPFAVLGSIGVISEIPNVYERLK 123

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           K GV  ++V +   K   +P  ++    V+  +  ++     F   V + R  P      
Sbjct: 124 KEGVEFQTVTAGKFKRTLTPTKKIEKADVEKSKADIEDVLTLFKTFVKQQR--PKLVIDE 181

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
           ++ G  W GA+A K  L D +   ++V   L  L   + I  +K   P    
Sbjct: 182 VATGETWFGADALKRDLCDELKTTDDVLLEL--LAAGREIFSVKYRPPQSGP 231


>gi|77465636|ref|YP_355139.1| serine peptidase [Rhodobacter sphaeroides 2.4.1]
 gi|77390054|gb|ABA81238.1| protein C. Serine peptidase. MEROPS family S49 [Rhodobacter
           sphaeroides 2.4.1]
          Length = 448

 Score = 70.0 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 13/185 (7%)

Query: 38  VARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           VA I + G +                + L+ +I     D S   + + + S GG      
Sbjct: 86  VAVIEVTGTLVHRGGWIGQSSGTTSYEGLMAQITAAVADPSVRGIALEIDSYGGEVAGLF 145

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +   I+  +  KPV   V E A SA Y I+  +  IV   T  VGSIGVL  +      
Sbjct: 146 DLADTIRAARAVKPVRAFVAEAALSAAYAIASQAERIVLPRTGAVGSIGVLLVHADFSQA 205

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           +   GV++  + +   K + +P+  +       +Q  V++S   F   V+  R     + 
Sbjct: 206 MADRGVAVTLIHAGRHKVDGNPYEALPEGVRADLQARVEASRGLFAETVAAGRGARLTRQ 265

Query: 205 LVLSD 209
             L+ 
Sbjct: 266 QALAT 270


>gi|260757395|ref|ZP_05869743.1| clp protease:peptidase U7:Na+/H+ antiporter NhaA [Brucella abortus
           bv. 4 str. 292]
 gi|260667713|gb|EEX54653.1| clp protease:peptidase U7:Na+/H+ antiporter NhaA [Brucella abortus
           bv. 4 str. 292]
          Length = 708

 Score = 70.0 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 84/203 (41%), Gaps = 12/203 (5%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64
           L      ++              +  + + G I                   +E+   D 
Sbjct: 470 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 529

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122
            A A+ +S++SPGG+      I+R I+ +  +++K V   V ++AAS GY+I+ A + I+
Sbjct: 530 HAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 589

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A  +S+VGSIGV+         L K+GV  +   +   K    PF     + ++ ++ + 
Sbjct: 590 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 649

Query: 183 DSSYHWFVRLVSESRNIPYDKTL 205
              +  F+ +V E R        
Sbjct: 650 LEIHATFIDMVKERRAASLATIP 672


>gi|144897349|emb|CAM74213.1| Periplasmic serine proteases (ClpP class) [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 173

 Score = 69.6 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 4/150 (2%)

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
            F  KLGVS   VK        S   + +P+A + +   +D+ Y  F    ++ RN+  D
Sbjct: 5   DFWPKLGVSWDGVKRGDNADMMSANHKFSPQAWERLNRSLDAIYADFTGKAAKGRNLAPD 64

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV---WQSLYALGVDQSIRKIKDWNPPKNYW 259
           +   L+ GRIW G++A+  GL+D +GG +      + L  L  D  +  +  +  PK  W
Sbjct: 65  RMEELAKGRIWAGSDAQARGLVDALGGWDVAQAQVRELLKLAPDADLD-LVAYPKPKAPW 123

Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
               K +     L +   +    ++  + A
Sbjct: 124 QKLAKMMGGGGGLAEDEGMRALLRLARVLA 153


>gi|145480043|ref|XP_001426044.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393116|emb|CAK58646.1| unnamed protein product [Paramecium tetraurelia]
          Length = 292

 Score = 69.6 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 90/266 (33%), Gaps = 9/266 (3%)

Query: 35  SPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
              V  + I+G I      ++  ++E      S  AL + ++S GG  Y  E + + I+ 
Sbjct: 11  QKTVLVLRIQGSINSQLVSKISHQLEN-YNKGSVIALGLIINSQGGCPYQVEVLSKKIKS 69

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
             N  P+ T   E +    Y +    N   A  TS +G   +         FL   G++ 
Sbjct: 70  YLNGLPLYTFATEQSLGNAYQLLQLGNKSYAQNTSKIGFTQMYKNKLNFADFLQNYGINT 129

Query: 153 KSVKSSPMKAEPS----PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
              +SS +              + + +  +                 +R           
Sbjct: 130 FQYQSSQIVNHNFVVNSSIRGNSQQDMDYLDQYYGLKTKQVTDQCWTNRKEQIKINKDQL 189

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
           +  ++ G EAK +GL+D +G  E+V    Y       I         +N++   +K    
Sbjct: 190 ENNVFLGKEAKDLGLVDELGTYEKVLMQQYPKAKIIPINTEGKLTEYENWFNLFIKISQS 249

Query: 269 SSLLEDTIPLMKQTKVQ-GL-WAVWN 292
              +   +    +  ++ GL   VW 
Sbjct: 250 RGFMGLVLLFGVKVMLKWGLIIYVWR 275


>gi|320108131|ref|YP_004183721.1| peptidase S49 [Terriglobus saanensis SP1PR4]
 gi|319926652|gb|ADV83727.1| peptidase S49 [Terriglobus saanensis SP1PR4]
          Length = 213

 Score = 69.6 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 2/120 (1%)

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
                 Q +VD+ +  F+  V+  R    DK L L+ G++WTG +A  + LID  GG   
Sbjct: 96  PYQAYFQTLVDNMHGQFIHDVATGRGTSDDKILPLATGQVWTGQQAIGLHLIDKQGGFRV 155

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292
                           I+     K+    +L +    +L  +   L+ Q    G + +W 
Sbjct: 156 ALMDTARDAGISGEPGIQRPVKIKHGLLSNLISGDADNLFPNPSKLLDQA--PGFYYMWK 213


>gi|126464115|ref|YP_001045228.1| peptidase S49 [Rhodobacter sphaeroides ATCC 17029]
 gi|126105926|gb|ABN78456.1| protein C. Serine peptidase. MEROPS family S49 [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 451

 Score = 69.6 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 13/185 (7%)

Query: 38  VARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           VA I + G +                + L+ +I     D S   + + + S GG      
Sbjct: 86  VAVIEVTGTLVHRGGWIGQSSGTTSYEGLMAQITAAVADTSVRGIALEIDSYGGEVAGLF 145

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +  AI+  +  KPV   V E A SA Y I+  +  IV   T  VGSIGVL  +      
Sbjct: 146 DLADAIRAARAVKPVRAFVAEAALSAAYAIASQAERIVLPRTGAVGSIGVLLVHADFSQA 205

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           +   GV++  + +   K + +P+  +       +Q  V++S   F   V+  R     + 
Sbjct: 206 MADRGVAVTLIHAGRHKVDGNPYEALPEGVRADLQARVEASRALFAETVAAGRGARLSRQ 265

Query: 205 LVLSD 209
             L+ 
Sbjct: 266 QALAT 270


>gi|332993012|gb|AEF03067.1| putative inner membrane peptidase [Alteromonas sp. SN2]
          Length = 342

 Score = 69.6 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 113/254 (44%), Gaps = 18/254 (7%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           + E+    +  I  +G ++ ++      E+   +   +++D    ++V L S GG  +  
Sbjct: 89  NDEEEKSRLFVIDFKGSMDANEVEHLREEITAILCVANKEDE---VLVRLESGGGVVHGY 145

Query: 84  EAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                 +Q++K +   +   V ++AAS GY+++C ++ ++A++ + +GSIGVL Q P   
Sbjct: 146 GLAASQLQRIKEKGLTLTIAVDKVAASGGYMMACVADKLLASQFAYIGSIGVLAQLPNFN 205

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L K  V  +   +   K   + F E N +     ++ ++  +  F   V   R  P  
Sbjct: 206 KLLKKNDVEFEQHTAGEYKRTLTVFGENNDEGRAKFKEEIEEIHTLFKDFVHSQR--PDM 263

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               ++ G  W G +AK++GL+D +   ++   S +        R+I            +
Sbjct: 264 NIEKVATGEYWPGVKAKELGLVDALSTSDDYILSHF------PEREIFKVKYSLKKNVAE 317

Query: 263 LKNLSISSLLEDTI 276
              LS++++ E  +
Sbjct: 318 KLGLSVAAVAERVV 331


>gi|187933709|ref|YP_001885481.1| Clp protease [Clostridium botulinum B str. Eklund 17B]
 gi|187721862|gb|ACD23083.1| Clp protease family protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 232

 Score = 69.3 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 79/230 (34%), Gaps = 39/230 (16%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73
             ++     +  +  ++I GQIE              + +I ++  + ++D+   +++ L
Sbjct: 29  FGNTTAVTPNKSIQVLSIIGQIEGHMVLPPQTKATRYEHIIPQLIDLEQNDNVKGILIVL 88

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           ++ GG   AG AI   I+ +   KP ++ V     S G  ++ AS+      ++ +    
Sbjct: 89  NTVGGDVEAGLAIAEMIRSM--SKPTVSIVTGGGHSIGVPLATASDYSFITPSATMIVHP 146

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V      +                                  +M + + +          
Sbjct: 147 VRMNGFIIGVAQTF------------------------EYFKKMQERINEFITRTSHIKE 182

Query: 194 SESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
            E          +L+D G I  G +A   GLID VGG +E    L  L  
Sbjct: 183 EELEKFMLQTNELLNDVGTILIGKQAVDCGLIDEVGGIKEALSKLKELIK 232


>gi|303235964|ref|ZP_07322567.1| peptidase, S49 (protease IV) family protein [Prevotella disiens
           FB035-09AN]
 gi|302483837|gb|EFL46829.1| peptidase, S49 (protease IV) family protein [Prevotella disiens
           FB035-09AN]
          Length = 330

 Score = 69.3 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 80/230 (34%), Gaps = 9/230 (3%)

Query: 28  SSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSA 80
            S        +A   + G +         S++L E +++   +   T   + +++PGG A
Sbjct: 91  FSDESLPENSIAYHRVWGVVLAQSNWYFSSKQLEEDLKQAENNPQITCHFLHINTPGGEA 150

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           +  + +   ++        + E    +A             +     +     +   Y +
Sbjct: 151 WYMDRLSETLRNCNKPIITLCEQLCCSAGYYIGCHGQRVYGLTQNDMIGCIGTMCSFYDF 210

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI- 199
            + +       +++  ++              K+ Q +++V++     F+  V E R   
Sbjct: 211 EEYYKKLGITKVEAKATNSDLKNKMFDDLRKGKSEQYVREVLNPLCAQFLTEVREQRKAL 270

Query: 200 -PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                   +  G  +  +EA+KVGLID      EV      +G + + ++
Sbjct: 271 ASLADDAPVLRGETFLSSEAEKVGLIDGCKTMIEVLAEAVTIGKEYAEKE 320


>gi|323454083|gb|EGB09953.1| hypothetical protein AURANDRAFT_12803 [Aureococcus anophagefferens]
          Length = 204

 Score = 69.3 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 3/165 (1%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETS 127
           +++ L+S GG+          + +VK+    +T    ++AAS GY+++C  + IVA+  +
Sbjct: 42  VVLKLNSGGGTVTGYGLAAAQLMRVKDAGFKLTVCIEQVAASGGYMMACVGDRIVASPFA 101

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           ++GSIGV+   P V   L K G+  ++V +   K   +P  +V  + +   +  +   + 
Sbjct: 102 VLGSIGVISDIPNVYQRLKKEGIEFQTVTAGAYKRTLTPTKKVTKEDMDKSKQDIKEIFT 161

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
            F   V+  R  P      ++ G  W G +A K  L D +   ++
Sbjct: 162 LFKTFVAGQR--PALDIDAVATGETWFGEDALKRRLCDELRTFDD 204


>gi|260898467|ref|ZP_05906963.1| putative protease SohB [Vibrio parahaemolyticus Peru-466]
 gi|308089023|gb|EFO38718.1| putative protease SohB [Vibrio parahaemolyticus Peru-466]
          Length = 294

 Score = 68.9 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 12/203 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
            S      PH+  +   G I+        +E+   +      D    +++ L S GG  +
Sbjct: 97  GSLDSKREPHLFVLDFNGSIDAKEVGSLREEITAILAVAREGDE---VLLRLESGGGMVH 153

Query: 82  AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
                   + ++K    P+   V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P 
Sbjct: 154 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPN 213

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K  +  + + +   K   + F E   KA    +  ++ ++  F   + E R  P
Sbjct: 214 FNKLLKKHDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHVLFKDFIRERR--P 271

Query: 201 YDKTLVLSDGRIWTGAEAKKVGL 223
             +   ++ G  W G +AK++GL
Sbjct: 272 SLELEKVATGEHWFGTQAKELGL 294


>gi|323953763|gb|EGB49573.1| peptidase S49 [Escherichia coli H263]
          Length = 264

 Score = 68.9 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 13/167 (7%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
             L + GV I  + S   K + + F  +  +  Q MQ  +D++   F
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMF 242


>gi|300114839|ref|YP_003761414.1| peptidase S49 domain-containing protein [Nitrosococcus watsonii
           C-113]
 gi|299540776|gb|ADJ29093.1| Peptidase S49 domain protein [Nitrosococcus watsonii C-113]
          Length = 325

 Score = 68.9 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 98/232 (42%), Gaps = 12/232 (5%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSA 80
                + ++  +  +   G I  +      QE+   +   + +D    +++ L + GG  
Sbjct: 77  ARKKKQKHAKRIFVLDFHGDIRATAVASLRQEITAVLSVATPEDE---ILLRLENGGGLV 133

Query: 81  YAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           +        +++++ ++      V ++AAS GY+++C  N I+AA  +++GSIG L Q P
Sbjct: 134 HEHGLAASQLERIRRKQIPLTIAVDKIAASGGYMMACVGNRIIAAPFAIIGSIGALLQVP 193

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                LDK G+  + +K+  +K   + F     +  ++ +  V+  +  F   +   R  
Sbjct: 194 NFHRLLDKHGIDFEQIKAGELKRTVTLFGINTDRDRELAKQQVEDIHQLFKEFIVRHR-- 251

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
           P+      + G+ W   +AK++ LID +   ++             +     
Sbjct: 252 PHIDLSQTATGQHWHAIQAKELNLIDDLETSDDYLTEACKTADLYKVTYTIK 303


>gi|323953809|gb|EGB49615.1| peptidase S49 [Escherichia coli H263]
          Length = 241

 Score = 68.9 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 67/159 (42%), Gaps = 13/159 (8%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
             L + GV I  + S   K + + F  +  +  Q MQ  
Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQR 234


>gi|313157920|gb|EFR57326.1| peptidase, S49 (protease IV) family protein [Alistipes sp. HGB5]
          Length = 190

 Score = 68.9 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 62/149 (41%)

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           IVA + +L GSIGV       +  L            S   +       + P    M+  
Sbjct: 2   IVADKLTLTGSIGVFGMILDTREALKNKLGITIDGVQSNASSSFLATQPLTPVQRSMIMR 61

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
            VD  Y  F   V+E RN+P +K L ++ GR+W+GA+A  +GLID  GG +         
Sbjct: 62  GVDKVYTTFTNDVAEGRNLPIEKVLDIAGGRVWSGADALGIGLIDTYGGLKTAIALAVDK 121

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
                  ++ +       +   + +L++S
Sbjct: 122 ADLGDNYRVTEVTETPTGFAAFIASLNMS 150


>gi|104641333|gb|ABF73019.1| plastid periplasmic serine protease IV protein precursor [Karenia
           brevis]
          Length = 461

 Score = 68.9 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 77/254 (30%), Gaps = 44/254 (17%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
              E+   +++ + D   + +I+++            + R+++  ++         E+  
Sbjct: 139 SLSEVTLNLQKAAADPRISGVILNIKPLTCGWGKVSELVRSLKHFQSSGKFCMCYLEIMT 198

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP-- 166
               +++ A        ++ +   GV  +  ++   L K GV  +  +    K+      
Sbjct: 199 EKEAVVAAACGESYMPPSAYISLTGVSLKGQFLGDVLRKAGVEPQIQRIGAYKSAGDQLQ 258

Query: 167 ------------------------------------------FSEVNPKAVQMMQDVVDS 184
                                                           +    ++     
Sbjct: 259 RGNMSTAQREVLNALADDVYEGMVCLLAELSNGTHSXEASADNRPYTEEEEAYVKANAQK 318

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           SY  F    + SR +  + T  ++ GR+WTG +AK  GL+D +GG               
Sbjct: 319 SYTLFRDTAALSRGLAINATEAVAQGRVWTGRQAKGAGLVDALGGLWTAIALAKKAAKID 378

Query: 245 SIRKIKDWNPPKNY 258
              ++ +    ++ 
Sbjct: 379 GDVRVFEAGVRRSR 392


>gi|153840986|ref|ZP_01993380.1| secreted protease [Vibrio parahaemolyticus AQ3810]
 gi|149745539|gb|EDM56755.1| secreted protease [Vibrio parahaemolyticus AQ3810]
          Length = 192

 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 83/183 (45%), Gaps = 7/183 (3%)

Query: 101 TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160
             V ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P     L K  +  + + +   
Sbjct: 13  ISVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPNFNKLLKKHDIEYEQLTAGEY 72

Query: 161 KAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKK 220
           K   + F E   KA    +  ++ ++  F   + E R  P  +   ++ G  W G +AK+
Sbjct: 73  KRTLTMFGENTDKARDKFKQELEETHVLFKDFIRERR--PSLELEKVATGEHWFGTQAKE 130

Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
           +GL+D +   +++  +        ++  +      K      L  ++        + L +
Sbjct: 131 LGLVDEISTSDDLVVAACKEKTVLAVHYV-----QKKKLADKLAGVASKVADSVVLKLAE 185

Query: 281 QTK 283
           + +
Sbjct: 186 RGQ 188


>gi|332141318|ref|YP_004427056.1| putative inner membrane peptidase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551340|gb|AEA98058.1| putative inner membrane peptidase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 340

 Score = 68.1 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 110/253 (43%), Gaps = 18/253 (7%)

Query: 31  VEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
            + N   +  +  +G ++ ++      E+   +   +++D    ++V L S GG  +   
Sbjct: 88  EDANKSRLYVLDFKGSMDANEVEHLREEVTAILCVANKEDE---VLVRLESGGGVVHGYG 144

Query: 85  AIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q++K +   +   V ++AAS GY+++C ++ ++A++ + +GSIGVL Q P    
Sbjct: 145 LAASQLQRIKEKGLKLTIAVDKVAASGGYMMACVADKLLASQFAYIGSIGVLAQLPNFNK 204

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K  +  +   +   K   + F E N +     ++ ++  +  F   V   R  P   
Sbjct: 205 LLKKNDIEFEQHTAGEFKRTLTIFGENNDEGRAKFKEEIEEIHVLFKDFVQSQR--PDMN 262

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              ++ G  W G +AK +GL+D +   ++   S Y        R+I            + 
Sbjct: 263 IDKVATGEYWPGIKAKTLGLVDEITTSDDYILSHY------PAREIFSVKYSVKKNVAEK 316

Query: 264 KNLSISSLLEDTI 276
             +S +S++E   
Sbjct: 317 LGMSAASVVERVF 329


>gi|255017492|ref|ZP_05289618.1| hypothetical protein LmonF_06458 [Listeria monocytogenes FSL
           F2-515]
          Length = 112

 Score = 68.1 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y+ FV++V++ R +  ++   ++DGRI+ G +AK+ GLID  G QE+  ++L        
Sbjct: 2   YNEFVKVVAQGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALEALKKEQGLAG 61

Query: 246 IRKIKDWNPPKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291
              I+   P        +    IS   + +   I L    K   +  ++
Sbjct: 62  ATVIQYDAPGDFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYLY 110


>gi|213581681|ref|ZP_03363507.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 107

 Score = 67.7 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 3/110 (2%)

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           MMQ  ++  Y  F+ LV+++R    ++   ++ G +WTG +AK  GL+D +G  ++    
Sbjct: 1   MMQLSIEYGYKRFITLVADARKRTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAK 60

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
              L        +  +          + +++ S  +   +P   Q  +  
Sbjct: 61  AAELAKL-KQWHLDYYQDEPTVLDMVMDSMTGS--VRAMLPEAIQAMLPA 107


>gi|220923762|ref|YP_002499064.1| peptidase S49 [Methylobacterium nodulans ORS 2060]
 gi|219948369|gb|ACL58761.1| peptidase S49 [Methylobacterium nodulans ORS 2060]
          Length = 300

 Score = 67.7 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 85/215 (39%), Gaps = 18/215 (8%)

Query: 38  VARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           VA I + G I                +  L   ++         A+++ + SPGGS    
Sbjct: 74  VAVIPVIGPIFPRANMLTEMSGTGTSAAMLARDLQLARDSAEVGAVMLLVDSPGGSPTGI 133

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
            A+   +  ++ RK V+  V   AASA Y I+ ++  +V  +T ++GSIGV+        
Sbjct: 134 NALADQLYAMRGRKRVVAHVSGSAASAAYWIASSAGELVTEKTGMLGSIGVVAAISKQVE 193

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
                 +SI+ V S+     P P           ++ ++DS    F+  V+  R     +
Sbjct: 194 PDASGSLSIEIVSSNAPNKRPDPQ---TEDGAAEIRALLDSIEAQFIADVARGRKTTPAR 250

Query: 204 TL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
                  G +  GA+A   G+ D V   +   + L
Sbjct: 251 VRTNFGAGGMKVGADAVAAGMADRVQTYDFTLRDL 285


>gi|270667919|ref|ZP_06222488.1| protease IV [Haemophilus influenzae HK1212]
 gi|270316754|gb|EFA28517.1| protease IV [Haemophilus influenzae HK1212]
          Length = 259

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 3/109 (2%)

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
           FS +      + Q  ++  Y  F+ +VS+ R +   +   L+ G++W G++A + GL+D 
Sbjct: 6   FSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVDKLAQGQVWLGSDAFQNGLVDE 65

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
           +G   E       L   +    ++D++     WF D     IS+LL DT
Sbjct: 66  IGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNVSLISTLLRDT 111


>gi|254519174|ref|ZP_05131230.1| peptidase S14 [Clostridium sp. 7_2_43FAA]
 gi|226912923|gb|EEH98124.1| peptidase S14 [Clostridium sp. 7_2_43FAA]
          Length = 246

 Score = 67.3 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 39/236 (16%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73
             + +       +  + I GQIE              + +I ++  + R+D+   +++ L
Sbjct: 35  FGTDNGVAQDESIQILPIIGQIEGHQVLPAQSKSTKYEHVIPQLIAMERNDNVKGVLIIL 94

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           ++ GG   AG AI   I  +      I      +       S + + I  + T +V  I 
Sbjct: 95  NTVGGDVEAGLAIAEMINSLSKPTVSIVIGGGHSIGVPLATSSSYSFITPSATMIVHPIR 154

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           +      V    +      + + +  ++       E+                       
Sbjct: 155 MNGFVIGVAQTFNYFQKMQERIDNFIVRTSKIKKDEL----------------------- 191

Query: 194 SESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
              R +      +L+D G I  G +A + GLID  GG ++    L  L  ++  +K
Sbjct: 192 ---RQMMLKSDELLNDMGTILIGKQAVECGLIDEEGGIKDALNKLKELIGEKESKK 244


>gi|258611700|ref|ZP_05711610.1| peptidase [Listeria monocytogenes FSL R2-503]
 gi|258605514|gb|EEW18122.1| peptidase [Listeria monocytogenes FSL R2-503]
          Length = 193

 Score = 67.3 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 66/135 (48%), Gaps = 16/135 (11%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76
            E  +  +A +++ G I+D+ +               ++++E++  DD+   +++ ++SP
Sbjct: 56  EEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLEQVRNDDNIQGVLLYVNSP 115

Query: 77  GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           GG       I   I +++  +  P    +  MAAS GY IS  ++ I A++ +L GS+GV
Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175

Query: 135 LFQYPYVKPFLDKLG 149
           + Q       + K+ 
Sbjct: 176 IMQGYDYSELMKKIR 190


>gi|167948600|ref|ZP_02535674.1| peptidase S49 [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 141

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 10/139 (7%)

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY--DKTLVLS 208
             + + +   K    PFS VN    + +Q ++D  +  F+  V + R      D+   L 
Sbjct: 9   ERRLMTAGEHKGILDPFSPVNDYEREHIQRMLDQLHAQFIETVKQGRGERLKVDEYPELF 68

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW--FCDLKNL 266
            G  W+G E  K+GL+D  G    V + +           I D+ P ++ W  F +    
Sbjct: 69  SGLFWSGEEGLKIGLVDAFGSSSYVAREVIG------AEDIVDFTPEEDIWDRFAEKLGT 122

Query: 267 SISSLLEDTIPLMKQTKVQ 285
             +  +     L +   ++
Sbjct: 123 GAAQAIARMGGLTEGWSLR 141


>gi|297519281|ref|ZP_06937667.1| putative periplasmic protease [Escherichia coli OP50]
          Length = 176

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 8/183 (4%)

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           +AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    FL    + I+   +   K   +
Sbjct: 2   VAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKDIDIELHTAGQYKRTLT 61

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
              E   +  +  ++ ++ ++  F   V   R  P      ++ G  W G +A + GL+D
Sbjct: 62  LLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLDIEQVATGEHWYGQQAVEKGLVD 119

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
            +   +EV  SL         R++ +    +     D    S +   +  +    Q   +
Sbjct: 120 EINTSDEVILSLME------GREVVNVRYMQRKRLIDRFTGSAAESADRLLLRWWQRGQK 173

Query: 286 GLW 288
            L 
Sbjct: 174 PLM 176


>gi|99081464|ref|YP_613618.1| serine peptidase [Ruegeria sp. TM1040]
 gi|99037744|gb|ABF64356.1| protein C. Serine peptidase. MEROPS family S49 [Ruegeria sp.
           TM1040]
          Length = 315

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 73/212 (34%), Gaps = 19/212 (8%)

Query: 39  ARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           A + + G I                   +  I           ++V + SPGG       
Sbjct: 79  AVVPMFGPIFPRASMINASSDGTSLNAFMRDIRVAQASTDVHRIVVVVDSPGGVVSGLGE 138

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
               ++     KP+   V    ASA Y +      IV   ++ VGSIGV+      +   
Sbjct: 139 ASETLRATT--KPITAFVTGNCASAAYWLCSQFGEIVMDRSAAVGSIGVVASLSRQEAAD 196

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
           ++   S + V S+     P P      +    +Q  +D+    F+  V+  R +  D+  
Sbjct: 197 NQGRRSYEIVSSNAPNKRPDPS---TEEGRTAIQKDIDAIEEVFIADVAAGRRVSADRVR 253

Query: 206 -VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
                G + +   A + G+ D +G  E V   
Sbjct: 254 SDFGRGAMLSATRAIEAGMADRIGTLEGVLTE 285


>gi|294635994|ref|ZP_06714433.1| peptidase, S49 family [Edwardsiella tarda ATCC 23685]
 gi|291090671|gb|EFE23232.1| peptidase, S49 family [Edwardsiella tarda ATCC 23685]
          Length = 190

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 77/184 (41%), Gaps = 8/184 (4%)

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
            ++AAS GY+++C ++ IVAA  +++GSIGV+ Q P    +L K  V ++   +   K  
Sbjct: 14  DKVAASGGYMMACVADRIVAAPFAIIGSIGVVAQIPNFNRWLKKNDVDVELHTAGEFKRT 73

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
            + F E      +     +D ++  F + V   R  P      ++ G  W G +A + GL
Sbjct: 74  LTLFGENTEAGREKFCQELDETHRLFKQFVQ--RQRPSLDVDAVATGEHWYGEQALEKGL 131

Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
           +D +   +++  +           ++      +         ++ +   +  +    Q  
Sbjct: 132 VDELSTSDDLLIAEMEQA------EVIAVRYMRRKGLMARMGMAAAQGADSLLLRWWQRG 185

Query: 284 VQGL 287
            + L
Sbjct: 186 QRPL 189


>gi|239993633|ref|ZP_04714157.1| putative periplasmic protease [Alteromonas macleodii ATCC 27126]
          Length = 348

 Score = 66.9 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 96/211 (45%), Gaps = 12/211 (5%)

Query: 31  VEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
            E     +  I  +G ++ ++      E+   +   +++D    ++V L S GG  +   
Sbjct: 96  EEFEKSRLYVIDFKGSMDANEVEHLREEITAILCVANKEDE---VLVRLESGGGVVHGYG 152

Query: 85  AIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q++K +   +   V ++AAS GY+++C ++ ++A++ + +GSIGVL Q P    
Sbjct: 153 LAASQLQRIKEKGLKLTIAVDKVAASGGYMMACVADKLLASQFAYIGSIGVLAQLPNFNK 212

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K  +  +   +   K   + F E N +     ++ ++  +  F   V   R  P   
Sbjct: 213 LLKKNDIEFEQHTAGEFKRTLTVFGENNDEGRAKFKEEIEEIHILFKDFVQSQR--PDMD 270

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
              ++ G  W G +AK +GLID +   ++  
Sbjct: 271 IDKVATGEYWPGIKAKSLGLIDDITTSDDYI 301


>gi|323179198|gb|EFZ64768.1| head-tail preconnector protein GP5 domain protein [Escherichia coli
           1180]
          Length = 225

 Score = 66.6 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 63/149 (42%), Gaps = 13/149 (8%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
             L + GV I  + +   K + + F  + 
Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALP 224


>gi|146340583|ref|YP_001205631.1| hypothetical protein BRADO3628 [Bradyrhizobium sp. ORS278]
 gi|146193389|emb|CAL77405.1| conserved hypothetical protein; putative peptidase S49 domain
           [Bradyrhizobium sp. ORS278]
          Length = 289

 Score = 66.6 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 100/212 (47%), Gaps = 11/212 (5%)

Query: 37  HVARIAIRGQIE--------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
            +A I++ G +            ++  ++ R + D    ++I+ + SPGG+         
Sbjct: 58  KIALISVSGPLTPRGSWYGSSLAQIAAQVARAAADADVGSIILDVDSPGGTVAGTAEAAA 117

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
           A+ +   RKP +  V+ +AASA Y I+  ++ IV   ++ VGSIG +  +      L+  
Sbjct: 118 AVAEAAQRKPCVACVNTLAASAAYWIASQASEIVMTPSADVGSIGAMVMHVDYSKALEDA 177

Query: 149 GVSIKSVK--SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-L 205
           G+++  ++   SP K E  PF  ++ +A   +Q  V+ +   F+R V+  R +   K   
Sbjct: 178 GITVTMIRSEQSPKKNEAHPFGPLSDEARANLQSRVNDAGADFIRAVASGRRVTQSKVKE 237

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
               GR++   EA   G++D +   +E+   L
Sbjct: 238 DFGQGRMFGAREAVARGMVDRISTFDELVSRL 269


>gi|301022675|ref|ZP_07186530.1| peptidase, S49 family protein [Escherichia coli MS 196-1]
 gi|299881171|gb|EFI89382.1| peptidase, S49 family protein [Escherichia coli MS 196-1]
          Length = 222

 Score = 66.6 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 59/139 (42%), Gaps = 13/139 (9%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG A  
Sbjct: 76  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195

Query: 143 PFLDKLGVSIKSVKSSPMK 161
             L + GV I  + +   K
Sbjct: 196 GHLAQAGVDITLIYAGAHK 214


>gi|304383386|ref|ZP_07365852.1| possible protease [Prevotella marshii DSM 16973]
 gi|304335554|gb|EFM01818.1| possible protease [Prevotella marshii DSM 16973]
          Length = 331

 Score = 65.8 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 93/227 (40%), Gaps = 13/227 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSA 80
               +     +A   + G +         S++L   +     +   +   + ++SPGG A
Sbjct: 92  FDDEQLPDNSIAYHRVWGTVMADSYYWFSSKQLAADLHAAEANPQISCHFLHINSPGGEA 151

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA-AETSLVGSIGVLFQYP 139
           +  + +   ++    +KP++T   +M  SAGY I C  N I A  +   VG IG +  + 
Sbjct: 152 WYLDRLSETLRA--CQKPILTFYEQMCCSAGYYIGCHGNRIYALTDNDYVGCIGTMCSFY 209

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP-KAVQMMQDVVDSSYHWFVRLVSESRN 198
             +P+ +KLG+     K++    +   F ++   K  + + D++D     F+  V   R+
Sbjct: 210 DFEPYFEKLGIKRVEAKATNSDLKNKTFDDLRHGKDEKFVHDILDPLNVQFLAEVRSQRS 269

Query: 199 IPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
              +      +  G  +   +A ++GL D     +E       +G +
Sbjct: 270 QLAELPDDAPVLRGETFYTPQAVELGLTDGSHTMQEAIAEAVTMGRE 316


>gi|281425071|ref|ZP_06255984.1| putative protease transmembrane protein [Prevotella oris F0302]
 gi|281400915|gb|EFB31746.1| putative protease transmembrane protein [Prevotella oris F0302]
          Length = 329

 Score = 65.8 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 83/233 (35%), Gaps = 15/233 (6%)

Query: 28  SSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSA 80
            S  +     +A   + G +         S++L   +     +   +   + ++SPGG A
Sbjct: 91  FSDEQLPDNSIAYHRVFGTVMADSYYWFSSKQLQSDLLAAEANPQISCHFLHINSPGGEA 150

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV--AAETSLVGSIGVLFQY 138
           +  + +   ++     KP++T   +M  SAGY I C    I        +     +   Y
Sbjct: 151 WYLDRLSETLR--SCEKPILTFYEQMCCSAGYYIGCHGQRIYAMTQNDYVGCIGTMCSFY 208

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
            +   F       +++  ++            + K  Q +++++D     F+  V   R+
Sbjct: 209 DFEPYFAKLGIKKVEAKATNSDLKNKVFDDLRHGKDAQFVKEILDPMNVQFLDEVRSQRS 268

Query: 199 ---IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 D   VL     +T  +A ++GL D      E       +G + +  K
Sbjct: 269 KLADLPDDVPVLRGETFYTP-QAVEIGLADGSRTMVEAIAEASTMGREYTEAK 320


>gi|212710697|ref|ZP_03318825.1| hypothetical protein PROVALCAL_01764 [Providencia alcalifaciens DSM
           30120]
 gi|212686394|gb|EEB45922.1| hypothetical protein PROVALCAL_01764 [Providencia alcalifaciens DSM
           30120]
          Length = 168

 Score = 65.4 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 2/153 (1%)

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           +++C +N IVAA  S++GSIGV+ Q P +   L K  V ++   +   K   +   E   
Sbjct: 1   MMACIANKIVAAPFSIIGSIGVVAQVPNIHRLLKKHDVDVELHTAGEYKRTLTMLGENTE 60

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
           +  +   + ++S++  F   V ++R  P      ++ G  W G +A + GL+D +G  ++
Sbjct: 61  QGRKKFVEDLNSTHELFKDFVHQNR--PSLDIAAVATGEYWYGTQALEKGLVDQIGVSDD 118

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
           +           SIR +      + +     ++
Sbjct: 119 LIIDAIETKEIVSIRFVMSKKMVERFTSSAAES 151


>gi|262365465|gb|ACY62022.1| peptidase family U7 protein [Yersinia pestis D182038]
          Length = 168

 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 75/176 (42%), Gaps = 8/176 (4%)

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           +++C ++ I+ A  +++GSIGV+ Q P     L K  + ++   +   K   + F E   
Sbjct: 1   MMACVADRIICAPFAIIGSIGVVAQIPNFHRLLKKNDIDVELHTAGEFKRTLTLFGENTE 60

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
           +  +  ++ ++ ++  F + V + R  P      ++ G  W G +AK+ GL+D +G  ++
Sbjct: 61  QGREKFREDLNETHLLFKQFVQQQR--PSLDIDAVATGEHWFGTQAKEKGLVDAIGTSDD 118

Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
           +   +  +       ++            +    S +  ++  +    Q   + L 
Sbjct: 119 LL--IAEM----DNHEVIGVRYSHRKRLIERFMGSATESVDSLLLRWWQRGEKPLL 168


>gi|298713144|emb|CBJ26900.1| putative periplasmic protease [Ectocarpus siliculosus]
          Length = 898

 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 80/197 (40%), Gaps = 6/197 (3%)

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCAS 118
              + +   ++V L SPGG           + ++K+R   +T    ++AAS GY+I+C +
Sbjct: 564 AHGNTTTDEVVVVLESPGGEVTEFGLAAARLARLKDRGFRLTVCVDKVAASGGYMIACIA 623

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + +  A  +++GSIGV+         L K GV      S   K+   PF EV  +   M 
Sbjct: 624 DELTTAPFAMLGSIGVVGGMTNFNKALKKYGVDYFHFTSGQHKSLVGPFQEVTKENKAMQ 683

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           Q  +D+ +  F   V   R  P      +  G IW G  A  + L D V       + L 
Sbjct: 684 QKQMDAIHSAFKTHVHRYR--PSVDIEAVGTGEIWLGQRAVDMRLADKVTT---AMEYLQ 738

Query: 239 ALGVDQSIRKIKDWNPP 255
               D  +  +K     
Sbjct: 739 GRMTDAQVFLVKPHKKK 755


>gi|187735829|ref|YP_001877941.1| peptidase S49 [Akkermansia muciniphila ATCC BAA-835]
 gi|187425881|gb|ACD05160.1| peptidase S49 [Akkermansia muciniphila ATCC BAA-835]
          Length = 247

 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 77/221 (34%), Gaps = 27/221 (12%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSA 66
               +F  +            I + G +                Q +++ I+  +   + 
Sbjct: 31  FDFSFFIQTRQKARVIGSSLVIDVIGPLYGDGVPLNEVLGGTNYQSIVKEIKGAA--GNI 88

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
             ++    SPGG           I+ +      +  V  M  SA Y ++ A + +V  ET
Sbjct: 89  DEVVFIFDSPGGDVQGCHETAELIKSLPVE--TVAYVKGMCCSAAYYLASACDQVVVTET 146

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           +LVGSIG +      K        +  +V          P + +N +A+   +D+ +   
Sbjct: 147 ALVGSIGTVISLWNAKSEEILTITNDDAVFKH-------PETPMNTEAIAYYRDLCNKIA 199

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
             F   V+  R            G+++   +A  +GLID V
Sbjct: 200 GRFQEFVASGRPGLSADA---FSGKVFVAEDAVSLGLIDDV 237


>gi|145499263|ref|XP_001435617.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124402751|emb|CAK68220.1| unnamed protein product [Paramecium tetraurelia]
          Length = 243

 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 89/240 (37%), Gaps = 14/240 (5%)

Query: 36  PHVARIAIRGQIEDSQELIERIERISRD---DSATALIVSLSSPGGSAYAGEAIFRAIQK 92
             + RI I+  I    +L + I     +     A  L V +   GGS    + I   +QK
Sbjct: 5   NRIIRINIQRPITS--KLTQLIRNQLENFSFYQAKVLAVQIDCQGGSVVQAKQIQYLLQK 62

Query: 93  VKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
              ++  P++        ++  +I   ++ I+AA  S +G      Q   +   + +  +
Sbjct: 63  FAQKQKLPILCFAGAQVYNSANIILSCADKIIAANNSEIGDYTFSGQLWNISELIKRENL 122

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP-------YDK 203
            + ++     K   +PF        + + + + ++     + ++ + +          D 
Sbjct: 123 EVINLSHGKYKDRLNPFQPYKETDKEWLNNSMKNNEIELKKQITLNLSKKFINLHEQTDC 182

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
                   I TG +A+K+ ++D +G  +E  QS Y         K + +N  +      +
Sbjct: 183 LNEAFQSSILTGYQAQKLKIVDEIGTIDEYLQSNYKNMKTIEFFKPQAYNIQQEIIEKLI 242


>gi|330946509|gb|EGH47542.1| putative inner membrane peptidase [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 189

 Score = 64.6 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 78/195 (40%), Gaps = 7/195 (3%)

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           +   P+   + ++AAS GY+++C  N I++A  +++GSIGV+ Q P V   L K  +  +
Sbjct: 2   QAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQLPNVNRLLKKHDIDFE 61

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
            + +   K   + F E   K  +  Q  +D ++  F   V+  R  P      ++ G +W
Sbjct: 62  VLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASYR--PQLSIDEVATGEVW 119

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273
            G  A    L+D +   +E             +  +      +      +   + +S  +
Sbjct: 120 LGMAAVDKLLVDELKTSDEYLAERAKDADVFHLHYV-----QRKSLQERMGMAAATSADQ 174

Query: 274 DTIPLMKQTKVQGLW 288
                  +   Q  W
Sbjct: 175 LVTKWWGRLTQQRFW 189


>gi|254671316|emb|CBA08710.1| signal peptide peptidase SppA, 36K type [Neisseria meningitidis
           alpha153]
          Length = 129

 Score = 64.6 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 56/135 (41%), Gaps = 10/135 (7%)

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVL 207
           +  +   +   K    PFS   P+  ++ ++++   +  F++ V   R       +   +
Sbjct: 1   MKRRVKIAGSNKGMGDPFSPETPEQSKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDV 60

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKN 265
             GR++TGA+A KVGL+D +G    V + +           + D+ P  ++         
Sbjct: 61  FSGRVYTGADALKVGLVDGLGNIYSVARDVVK------APDVVDYTPKDDFGRILGRRFG 114

Query: 266 LSISSLLEDTIPLMK 280
             + + + + +  ++
Sbjct: 115 AELKASVREALQAVR 129


>gi|330902693|gb|EGH33708.1| putative inner membrane peptidase [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 193

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 78/195 (40%), Gaps = 7/195 (3%)

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
           +   P+   + ++AAS GY+++C  N I++A  +++GSIGV+ Q P V   L K  +  +
Sbjct: 6   QAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQLPNVNRLLKKHDIDFE 65

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
            + +   K   + F E   K  +  Q  +D ++  F   V+  R  P      ++ G +W
Sbjct: 66  VLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASYR--PQLSIDEVATGEVW 123

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273
            G  A    L+D +   +E             +  +      +      +   + +S  +
Sbjct: 124 LGMAAVDKLLVDELKTSDEYLAERAKDADVFHLHYV-----QRKSLQERMGMAAATSADQ 178

Query: 274 DTIPLMKQTKVQGLW 288
                  +   Q  W
Sbjct: 179 LATKWWGRLTQQRFW 193


>gi|27311191|ref|NP_758917.1| ORF24 [Vibrio phage VHML]
 gi|26891711|gb|AAN12323.1| ORF24 [Vibrio phage VHML]
          Length = 426

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 75/197 (38%), Gaps = 8/197 (4%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGS--AYAGEAIFRAIQKVKNRKPVITEV 103
            I   + +    +    D     +        G   A     +  ++      K  +T V
Sbjct: 87  PITSYELIRHDYDTALNDPGVQ-IDRHGDLTHGGGEAAGCYDLAPSLLSAPGVKRPVTRV 145

Query: 104 HEMAASAG---YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160
                S     Y ++C  + +    ++  GSIGV+        +  K+G+SI  V     
Sbjct: 146 SLENESCYSAAYALACCCDQVFLTSSAGAGSIGVICGRLDQTEYNRKMGLSIAVVS-GDY 204

Query: 161 KAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKK 220
           KA+ SP   ++    Q +Q ++      F  LV+E+R +  ++   L  G  +TG  A  
Sbjct: 205 KADFSPHKVLSDDERQRLQALIVQLGSEFHNLVAEARGMTAEQVKALKAGC-FTGRXAVD 263

Query: 221 VGLIDVVGGQEEVWQSL 237
            GL D V  Q+E +  L
Sbjct: 264 NGLADGVMSQDEFYNYL 280


>gi|255524218|ref|ZP_05391177.1| peptidase S14 ClpP [Clostridium carboxidivorans P7]
 gi|296185339|ref|ZP_06853749.1| Clp protease [Clostridium carboxidivorans P7]
 gi|255512043|gb|EET88324.1| peptidase S14 ClpP [Clostridium carboxidivorans P7]
 gi|296050173|gb|EFG89597.1| Clp protease [Clostridium carboxidivorans P7]
          Length = 229

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 77/222 (34%), Gaps = 41/222 (18%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
           + E N   +  + I GQIE              + +I ++  I  D +   L++ L++ G
Sbjct: 28  NNEKNKDKIQVLPIIGQIEGHMILPPQSKSTKYEHVIPQLINIENDQNIEGLLIVLNTVG 87

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G   AG AI   I+ +   KP ++ V     S G  ++ A++    + ++ +    +   
Sbjct: 88  GDVEAGLAIAEMIRSL--SKPTVSLVIGGGHSIGVPLATAADYSFISPSATMIIHPIRMN 145

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
                            +     +               +++            +V    
Sbjct: 146 ----------------GLVIGVPQTFEYFNKMQERITEFIVRTSKIKREQVQKLMV---- 185

Query: 198 NIPYDKTLVLSD--GRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
                +T  L +  G I  G +A + GLID VGG  +  + L
Sbjct: 186 -----QTDELLNDMGTILIGEQAVEAGLIDQVGGISDAIKKL 222


>gi|254479114|ref|ZP_05092466.1| Clp protease [Carboxydibrachium pacificum DSM 12653]
 gi|214034963|gb|EEB75685.1| Clp protease [Carboxydibrachium pacificum DSM 12653]
          Length = 238

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 60/197 (30%), Gaps = 25/197 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  I  + S   ++V L++ GG   AG AI   I  +      I      +   
Sbjct: 64  EHIIPQLVAIEENPSIKGVLVLLNTVGGDVEAGLAIAEMIASLSKPTVSIVLGGGHSIGV 123

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +S   + IV + T  +  I +      V    D        +               
Sbjct: 124 PLAVSANYSYIVPSATMTIHPIRMTGLVVGVPQTFDYFNKMQDRIV-------------- 169

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                                 +        +       G I  G EA   GLID +GG 
Sbjct: 170 ------EFIVRNSKIKRETFMSLMLKTGELANDI-----GTILVGKEAVDYGLIDEIGGI 218

Query: 231 EEVWQSLYALGVDQSIR 247
           +E  + L+ L  ++  +
Sbjct: 219 KEALKKLHKLIEEREKK 235


>gi|145507772|ref|XP_001439841.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407036|emb|CAK72444.1| unnamed protein product [Paramecium tetraurelia]
          Length = 251

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 82/202 (40%), Gaps = 14/202 (6%)

Query: 77  GGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
            GS    + I  AI+      + P+ T   +   ++   +    +   A+E S++G  G 
Sbjct: 52  EGSFVQSKNIATAIRNYAKYYKVPLYTFGEDFVLNSSVYLMTVGDKNFASEYSVIGDFGY 111

Query: 135 LFQYPYVKPFLDKLGVSIK---------SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
           + +    K  ++ LG+             + S   K + SP+ ++  + V+ ++  +   
Sbjct: 112 VQRRLGYKQLIENLGMQYHKIIIIREHKFIHSGEKKVKLSPYDDLKEEDVKWIEGQLKHR 171

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ-SLYALGVDQ 244
                  + ++RN   D+   + +  + TG +A K GL+D +G  +++ +     +    
Sbjct: 172 ESRLKEEIMQNRNQKVDQ--EMWNQTLLTGQQALKYGLVDGLGVFDDIREQEYKGMKSYD 229

Query: 245 SIRKIKDWNPPKNYWFCDLKNL 266
            +  + D+  P N  F    ++
Sbjct: 230 ILSNLLDYYVPANATFSSYLSI 251


>gi|20807828|ref|NP_622999.1| protease subunit of ATP-dependent Clp protease [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516388|gb|AAM24603.1| Protease subunit of ATP-dependent Clp proteases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 239

 Score = 63.5 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 60/197 (30%), Gaps = 25/197 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  I  + S   ++V L++ GG   AG AI   I  +      I      +   
Sbjct: 65  EHIIPQLVAIEENPSIKGVLVLLNTVGGDVEAGLAIAEMIASLSKPTVSIVLGGGHSIGV 124

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +S   + IV + T  +  I +      V    D        +               
Sbjct: 125 PLAVSANYSYIVPSATMTIHPIRMTGLVVGVPQTFDYFNKMQDRIV-------------- 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                                 +        +       G I  G EA   GLID +GG 
Sbjct: 171 ------EFIVRNSKIKRETFMSLMLKTGELANDI-----GTILVGKEAVDYGLIDEIGGI 219

Query: 231 EEVWQSLYALGVDQSIR 247
           +E  + L+ L  ++  +
Sbjct: 220 KEALKKLHKLIEEREKK 236


>gi|300854510|ref|YP_003779494.1| putative protease [Clostridium ljungdahlii DSM 13528]
 gi|300434625|gb|ADK14392.1| predicted protease [Clostridium ljungdahlii DSM 13528]
          Length = 221

 Score = 63.5 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 72/223 (32%), Gaps = 37/223 (16%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
           +V +   ++  + I GQIE              + +I  +  I  D     L+V L++ G
Sbjct: 21  NVAEGRDNIQILPIIGQIEGHVNLSSETKTTKYEHVIPNLIAIENDKRVEGLLVVLNTVG 80

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G   AG AI   I+ +      +      +       +   + I  + T ++  I +   
Sbjct: 81  GDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGVPLATASDYSFISPSATMIIHPIRMSGM 140

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
              V    +      + +    ++       ++    +Q  + + D              
Sbjct: 141 VIGVPQTFEYFNKMQERINEFIVRTSKITGEKLTELMLQTDELLNDM------------- 187

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                       G I  G +A + GLID VGG  +    L  +
Sbjct: 188 ------------GTILIGKQAVEQGLIDEVGGISQAINKLNEM 218


>gi|158320570|ref|YP_001513077.1| peptidase S14 ClpP [Alkaliphilus oremlandii OhILAs]
 gi|158140769|gb|ABW19081.1| peptidase S14 ClpP [Alkaliphilus oremlandii OhILAs]
          Length = 245

 Score = 63.1 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 75/232 (32%), Gaps = 37/232 (15%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73
              + +  +   +  + I GQIE              + +I ++  +  D     L+V L
Sbjct: 39  FGVNDLPQSDKSIYTMNIIGQIEGHMIAAPQNKSTKYEHIIPQLVAVEEDPKIKGLLVIL 98

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           ++ GG   AG AI   I  +   KP +T V     S G  ++ A +    A T+ +    
Sbjct: 99  NTMGGDVEAGLAIAELIGSL--SKPTVTLVIGGGHSIGVPLATAGDYSFIAPTATMTIHP 156

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           +      +                         F ++  + +  +    +     F  L+
Sbjct: 157 IRMNGLVIGIP-----------------QTFRYFLKMQERIINFVLRTSNVERETFTSLM 199

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           +          L    G I  G EA   GLID VGG       L  L  +  
Sbjct: 200 NA------TDELANDVGTILIGEEAVHHGLIDEVGGLNSAISKLKDLIRENE 245


>gi|307565406|ref|ZP_07627895.1| peptidase, S49 (protease IV) family protein [Prevotella amnii CRIS
           21A-A]
 gi|307345856|gb|EFN91204.1| peptidase, S49 (protease IV) family protein [Prevotella amnii CRIS
           21A-A]
          Length = 274

 Score = 63.1 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 78/225 (34%), Gaps = 13/225 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSA 80
               +     +A   + G +         S++L   +     +   +   + ++SPGG A
Sbjct: 36  FDDEQLPDNSIAYHRVFGTVMAESYWWFSSKQLEADLLAAEANPQISCHFLHINSPGGEA 95

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV--AAETSLVGSIGVLFQY 138
           +  + +   ++    +KP++T   +M  SAGY I C  N I              +   Y
Sbjct: 96  WYLDRLSETLR--NCKKPILTFYEKMCCSAGYYIGCHGNRIYALTENDYAGCIGTMCSFY 153

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
            +   F       +++  ++      +     + K    +Q++++     F+  V   R 
Sbjct: 154 DFEDYFAKLGIKKVEAKATNSDLKNKTFDDLRHGKDEAFVQNILNPLNAQFLAEVRGQRK 213

Query: 199 IPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
              +      +  G  +   +A ++GL D      E       +G
Sbjct: 214 SLAELPDDAPVLRGETFYTPKAVEIGLADGSKTMAEAVAEAMTMG 258


>gi|325268614|ref|ZP_08135244.1| S49 family peptidase [Prevotella multiformis DSM 16608]
 gi|324989142|gb|EGC21095.1| S49 family peptidase [Prevotella multiformis DSM 16608]
          Length = 329

 Score = 63.1 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 81/232 (34%), Gaps = 13/232 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSA 80
            S  +     +A   + G +         S++L   +     +   +   + ++SPGG A
Sbjct: 91  FSDEQLPDNSIAYHRVFGIVMADSYYWFSSKQLQSDLLAAEANPQISCHFLHINSPGGEA 150

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV--AAETSLVGSIGVLFQY 138
           +  + +   ++     KP++T   +M  SAGY I C    I        +     +   Y
Sbjct: 151 WYLDRLSETLR--SCEKPILTFYEQMCCSAGYYIGCHGQRIYAMTQNDYVGCIGTMCSFY 208

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
            +   F       +++  ++            + K  + +++++D     F+  V   R+
Sbjct: 209 DFEPYFAKLGIKKVEAKATNSDLKNKVFDDLRHGKDAKFVKEILDPMNVQFLDEVRSQRS 268

Query: 199 I--PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                     +  G  +   +A ++GL D      E       +G + +  K
Sbjct: 269 KLADLPDDAPVLRGETFYTPQAVEIGLADGSRTMVEAISEASTMGREYTEAK 320


>gi|303274683|ref|XP_003056657.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461009|gb|EEH58302.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 848

 Score = 63.1 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 87/189 (46%), Gaps = 6/189 (3%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETS 127
           +++ L++ GG+          + ++++    +T    ++AAS GY+++C ++ +VA+  +
Sbjct: 565 VVLVLNTGGGTVTGYGLAAAQLTRIRDAGIKLTICVEQVAASGGYMMACVADRLVASPFA 624

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
           ++GSIGV+ + P +   L K G+  +++ +   K   +P  ++    V+     ++    
Sbjct: 625 VLGSIGVISEVPNLYERLKKEGIEFQTITAGKFKRTLTPTKKIEKADVEKSTRDIEDVLT 684

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F   V   R  P      ++ G  W G +A   GL D +   ++V   L  L  D    
Sbjct: 685 LFKGFVKSQR--PGLDIDDVATGETWFGEDAMNKGLCDALQTTDDV---LLQLLSDGKEI 739

Query: 248 KIKDWNPPK 256
               + PP+
Sbjct: 740 FSVKYAPPR 748


>gi|330883334|gb|EGH17483.1| putative inner membrane peptidase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 178

 Score = 63.1 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 7/185 (3%)

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
            ++AAS GY+++C  N I++A  +++GSIGV+ Q P V   L K  +  + + +   K  
Sbjct: 1   DKVAASGGYMMACIGNKIISAPFAILGSIGVVAQLPNVNRLLKKHDIDFEVLTAGEYKRT 60

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
            + F E   K  +  Q  +D ++  F   VS  R  P      ++ G +W G  A    L
Sbjct: 61  LTVFGENTEKGREKFQQDLDITHDLFKNFVSSYR--PQLSIDEVATGEVWLGMAAVDKLL 118

Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
           +D +   +E             +  +      +      +   + +S  +       +  
Sbjct: 119 VDELKTSDEYLAERAKDADVFHLHYV-----QRKSLQERMGMAAATSADQLATKWWGRLT 173

Query: 284 VQGLW 288
            Q  W
Sbjct: 174 QQRFW 178


>gi|326532262|dbj|BAK05060.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 169

 Score = 62.7 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 2/112 (1%)

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
              + P   ++ +    ++Y  F    + SR++  D+    + GR+W+G +A   GL+D 
Sbjct: 11  QRPLRPDEAELFEKSAQNAYASFRDKAAMSRSMGIDQMENFAQGRVWSGQDAASRGLVDS 70

Query: 227 VGGQEEVWQSLYALGVDQSIRKI--KDWNPPKNYWFCDLKNLSISSLLEDTI 276
           +GG  +              +K+   + +         L  +  S L  D +
Sbjct: 71  LGGFSQALAIAKQRAKIPQDKKVRLVEISKASPTLPEILSGIGGSILGVDRV 122


>gi|218507288|ref|ZP_03505166.1| peptidase S49 [Rhizobium etli Brasil 5]
          Length = 159

 Score = 62.7 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 71/160 (44%), Gaps = 10/160 (6%)

Query: 14  MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-EDSQELIERIERISRDDSATALIVS 72
           M+++++   +    +S V+          I G     ++ +         D S  A++++
Sbjct: 1   MIAVISFFGIVAQHASQVD---------DISGPGGTSTERVANSYRAAKSDPSVKAIVIN 51

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
             SPGG+    + +   I   +  KPVI +V+ + ASA Y ++ + + IV    ++ GSI
Sbjct: 52  FDSPGGNVSGVQVLADEIFNGRGDKPVIAQVNSLCASAAYWVASSCDEIVMTPGAMAGSI 111

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           GV   +  V   +D  G+    + +   K E + F  ++ 
Sbjct: 112 GVYSLHQDVSRAVDAAGLKFTFISAGKYKVEGNAFEPLSD 151


>gi|225416613|ref|ZP_03761802.1| hypothetical protein CLOSTASPAR_05837 [Clostridium asparagiforme
           DSM 15981]
 gi|225041859|gb|EEG52105.1| hypothetical protein CLOSTASPAR_05837 [Clostridium asparagiforme
           DSM 15981]
          Length = 293

 Score = 62.7 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 37/216 (17%)

Query: 37  HVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
            +  I I G++E                ++ ++ +I  DD+   L+V L++ GG   AG 
Sbjct: 98  KIHLITIIGEVEGHENLSGNSKATKYDHVLPQLAQIEDDDTVDGLLVLLNTSGGDVDAGL 157

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           AI   I  +      +      +      +S   + IV + T ++  + +          
Sbjct: 158 AIAEMIASLSMPTVSLVLGGSHSIGVPLAVSTNYSFIVPSGTMMIHPVRMSGMVIGSSQT 217

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
            +   +    + +         + ++            D                     
Sbjct: 218 YEYFAMIEDRILNFVESHARIAYDQLKELMHNTEMLTRDL-------------------- 257

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                G +  G EA + GLID VGG +E    LY +
Sbjct: 258 -----GTVLVGKEAVEAGLIDEVGGIKEALHKLYQM 288


>gi|260890124|ref|ZP_05901387.1| hypothetical protein GCWU000323_01286 [Leptotrichia hofstadii
           F0254]
 gi|260860147|gb|EEX74647.1| protease IV [Leptotrichia hofstadii F0254]
          Length = 286

 Score = 62.7 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 101/257 (39%), Gaps = 25/257 (9%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWS-------------------SHVEDNSPHVARI 41
           M F+LK +    +ML L  +  +                          V+     VA  
Sbjct: 1   MMFILKMLLEIVIMLILCVILNLILVKKILRVKNKKKLPLKKIKTVVFDVKKLKEDVAMP 60

Query: 42  AIRG-QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI 100
           A++G +     ++++ +  ++ D +   +I+ +     +    E I +   K+K  K V+
Sbjct: 61  ALKGKEKLSYYQILQGLNNLAEDKNIKKVIIDVDKLNLTLSQLEEISKIFDKIKKNKEVV 120

Query: 101 TEVHEMAASAGYLISCASNIIVA-AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
                   S       A  I +     S +   G L +  Y+K FL+K G+ +  +    
Sbjct: 121 AIGTLFEESRYREALLADKIFMFDTRQSTIIFRGYLHKEFYLKSFLEKFGIRMNVLHIGD 180

Query: 160 MKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
            K   E    ++++ +  + ++++ D  +  FV LV   R +  +   +LS   I+ G  
Sbjct: 181 YKVAGEKYSHNQMSEEKKESIKNIKDKVFEDFVELVKSKRGVDIEN-EILSGNLIFAGKK 239

Query: 217 EAKKVGLIDVVGGQEEV 233
           +A +  LID V   +E+
Sbjct: 240 KALEYKLIDGVADYDEI 256


>gi|289578373|ref|YP_003477000.1| peptidase S14 ClpP [Thermoanaerobacter italicus Ab9]
 gi|297544650|ref|YP_003676952.1| peptidase S14 ClpP [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|289528086|gb|ADD02438.1| peptidase S14 ClpP [Thermoanaerobacter italicus Ab9]
 gi|296842425|gb|ADH60941.1| peptidase S14 ClpP [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 233

 Score = 62.7 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 54/187 (28%), Gaps = 25/187 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  I  + +   +++ L++ GG   AG AI   I  +      I      +   
Sbjct: 62  EHIIPQLVAIEENPNIKGVLILLNTVGGDVEAGLAIAEMIASLSKPTVSIVLGGGHSIGV 121

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +S   + IV + T  +  I +      V    D        +               
Sbjct: 122 PLAVSANYSYIVPSATMTIHPIRMTGMVVGVPQTFDYFNKMQDRIV-------------- 167

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                                 +        +       G I  G EA   GLID +GG 
Sbjct: 168 ------EFIVRNSKIKRETFMELMLKTGELANDI-----GTILVGKEAVDYGLIDEIGGI 216

Query: 231 EEVWQSL 237
           +E    L
Sbjct: 217 KEALNML 223


>gi|167040270|ref|YP_001663255.1| peptidase S14, ClpP [Thermoanaerobacter sp. X514]
 gi|256750804|ref|ZP_05491689.1| peptidase S14 ClpP [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914354|ref|ZP_07131670.1| peptidase S14 ClpP [Thermoanaerobacter sp. X561]
 gi|307724410|ref|YP_003904161.1| peptidase S14 ClpP [Thermoanaerobacter sp. X513]
 gi|166854510|gb|ABY92919.1| peptidase S14, ClpP [Thermoanaerobacter sp. X514]
 gi|256750387|gb|EEU63406.1| peptidase S14 ClpP [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889289|gb|EFK84435.1| peptidase S14 ClpP [Thermoanaerobacter sp. X561]
 gi|307581471|gb|ADN54870.1| peptidase S14 ClpP [Thermoanaerobacter sp. X513]
          Length = 238

 Score = 62.7 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 55/187 (29%), Gaps = 25/187 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  I  + +   +++ L++ GG   AG AI   I  +      I      +   
Sbjct: 63  EHIIPQLVAIEENPNIKGVLILLNTVGGDVEAGLAIAEMIASLSKPTVSIVLGGGHSIGV 122

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +S   + IV + T  +  I +      V    D        +               
Sbjct: 123 PLAVSANYSYIVPSATMTIHPIRMTGLIVGVPQTFDYFNKMQDRIV-------------- 168

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                                 +        +       G I  G EA   GLID +GG 
Sbjct: 169 ------EFIVRNSKIKRDTFMKLMLKTGELANDI-----GTILVGKEAVDYGLIDEIGGI 217

Query: 231 EEVWQSL 237
           +E  + L
Sbjct: 218 KEALKRL 224


>gi|167037609|ref|YP_001665187.1| peptidase S14, ClpP [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|307264928|ref|ZP_07546490.1| peptidase S14 ClpP [Thermoanaerobacter wiegelii Rt8.B1]
 gi|320116024|ref|YP_004186183.1| peptidase S14 ClpP [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|326389423|ref|ZP_08210990.1| peptidase S14 ClpP [Thermoanaerobacter ethanolicus JW 200]
 gi|166856443|gb|ABY94851.1| peptidase S14, ClpP [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|306920186|gb|EFN50398.1| peptidase S14 ClpP [Thermoanaerobacter wiegelii Rt8.B1]
 gi|319929115|gb|ADV79800.1| peptidase S14 ClpP [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|325994428|gb|EGD52853.1| peptidase S14 ClpP [Thermoanaerobacter ethanolicus JW 200]
          Length = 238

 Score = 62.3 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 55/187 (29%), Gaps = 25/187 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  I  + +   +++ L++ GG   AG AI   I  +      I      +   
Sbjct: 63  EHIIPQLVAIEENPNIKGVLILLNTVGGDVEAGLAIAEMIASLSKPTVSIVLGGGHSIGV 122

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +S   + IV + T  +  I +      V    D        +               
Sbjct: 123 PLAVSANYSYIVPSATMTIHPIRMTGLIVGVPQTFDYFNKMQDRIV-------------- 168

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                                 +        +       G I  G EA   GLID +GG 
Sbjct: 169 ------EFIVRNSKIKRDTFMKLMLKTGELANDI-----GTILVGKEAVDYGLIDEIGGI 217

Query: 231 EEVWQSL 237
           +E  + L
Sbjct: 218 KEALKRL 224


>gi|145552723|ref|XP_001462037.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429874|emb|CAK94664.1| unnamed protein product [Paramecium tetraurelia]
          Length = 310

 Score = 62.3 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 93/235 (39%), Gaps = 14/235 (5%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHE 105
             + +++ ++ +  ++     L++S++S  G     + +  A Q+       P  T +  
Sbjct: 34  SSATKILFQLRKHIQEKP-KVLMLSINSAYGDITQAQIVAEAFQQAAQNLDAPFYTFIDC 92

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
            A  + Y ++     + A   SL+G +    +    +  L+   ++ +  KS        
Sbjct: 93  YALGSAYYLASCGTEVYANPFSLIGEVQPSKRSIGFQNVLENFKINYR--KSRRETILLD 150

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
            F++V+ K +Q +   V + + + +  + ++R           + +I+T  +A + GLID
Sbjct: 151 AFTKVSEKQLQFVNKEVQTEFQFALDQIKQNRAGK---IKKFEESKIYTAQQALENGLID 207

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
            +   +EV      L       K ++    K+     +    +   +E+ +   +
Sbjct: 208 DICTFDEV------LAKKYPKYKFRELTLYKDESSMIIVQGQLHLAIENLLTKFE 256


>gi|126732642|ref|ZP_01748439.1| Peptidase S49 [Sagittula stellata E-37]
 gi|126706926|gb|EBA05995.1| Peptidase S49 [Sagittula stellata E-37]
          Length = 323

 Score = 62.3 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 74/210 (35%), Gaps = 19/210 (9%)

Query: 36  PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
              A + + G I                  ++  +      +S   +++ + SPGG    
Sbjct: 79  DGTAVVPVFGTIFPRASMLGASTGGTALSSIMADMRVAWATESVERIVMLVDSPGGVVSG 138

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                 A++   + KP+   V  + ASA Y ++  +  IV   +++VGSIGVL      +
Sbjct: 139 LGEAAEALRA--SPKPITAFVTGIGASAAYWLASQAQEIVLDRSAMVGSIGVLATTSRQE 196

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                   S +   S      P P      +    +Q  VD+    FV  V+  R +   
Sbjct: 197 GPDASGRRSYEITSSGAPLKRPDPS---TDEGRAAIQRDVDALEAVFVADVAAGRRVKAS 253

Query: 203 KTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231
                   G +    EA   G+ D VG  E
Sbjct: 254 TVRSEFGRGAMVVAEEAVAAGMADRVGTLE 283


>gi|291563562|emb|CBL42378.1| Protease subunit of ATP-dependent Clp proteases [butyrate-producing
           bacterium SS3/4]
          Length = 224

 Score = 62.3 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 79/225 (35%), Gaps = 37/225 (16%)

Query: 32  EDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGS 79
           E+N   +  ++I G+IE              + ++  + ++  D+    +++ +++ GG 
Sbjct: 25  EENGKRIHLLSIIGEIEGHDNLSGSTKTTKYEHILPELAKVESDEKIGGVLILVNTIGGD 84

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
              G A+   I  +   KP ++ V   + S G  ++ AS+      T  +    V     
Sbjct: 85  VSCGLALAEMIASL--SKPTVSLVIGDSHSIGVPLAVASDYSFIVPTGTMLVHPVRMSGM 142

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            +                    A+   + E+  + +              ++ +  +  +
Sbjct: 143 VI------------------GTAQTYEYFEMIEERIISFVSEHSRIDREKMKRLMHNTKM 184

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
                     G +  G EA + GLID  GG  +  + L AL  + 
Sbjct: 185 LTKDL-----GTVLVGKEAVECGLIDGEGGIRDAIEKLNALIKND 224


>gi|182417555|ref|ZP_02948881.1| Clp protease [Clostridium butyricum 5521]
 gi|237668635|ref|ZP_04528619.1| Clp protease family protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378568|gb|EDT76096.1| Clp protease [Clostridium butyricum 5521]
 gi|237656983|gb|EEP54539.1| Clp protease family protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 241

 Score = 62.3 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 39/228 (17%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73
             ++ V + +  +  +++ GQIE              + +I ++  I ++DS   +++ L
Sbjct: 37  FGNTAVANPNRDIVVLSVIGQIEGHSVLPPQTKATKYEHIIPQLIEIEQNDSVKGVLIVL 96

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           ++ GG   AG AI   I  +      I      +       S   + I  + T +V  + 
Sbjct: 97  NTVGGDVEAGLAIAEMINSMSKPTVSIVIGGGHSIGVPLATSSDFSFITPSATMIVHPVR 156

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           +      +    +      + +    ++        +                       
Sbjct: 157 MNGFVIGIAQTFEYFKKMQERINDFIVRTSNIKSETLE---------------------- 194

Query: 194 SESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                       +L+D G +  G +A   GLID VGG  E  + L  L
Sbjct: 195 ----KFMLQTDDLLNDVGTMLIGKQAVDCGLIDEVGGISEAIKKLREL 238


>gi|330720768|gb|EGG98986.1| Periplasmic serine proteases (ClpP class) [gamma proteobacterium
           IMCC2047]
          Length = 113

 Score = 62.3 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
           +     +  Q V+  ++  F+  V + R         +  G IWTG +A ++GLID +G 
Sbjct: 1   MKEADKEFWQGVLSVTHKQFIEQVKKGRGDRLTSNDKVFSGLIWTGEQALEIGLIDGLGS 60

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYW--FCDLKNLSISSLLEDTIPL 278
              V + +           I D++  +  +  F D   ++ +S L +   +
Sbjct: 61  TGFVAREVIG------EENIVDFSLKRTPFEEFADRLGIAAASTLANKFGV 105


>gi|323187659|gb|EFZ72962.1| head-tail preconnector protein GP5 domain protein [Escherichia coli
           RN587/1]
          Length = 169

 Score = 61.9 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 13/123 (10%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     ++  +++   D     +++ + SPGG    
Sbjct: 42  NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQVAG 101

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
                  I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +    
Sbjct: 102 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 161

Query: 143 PFL 145
             L
Sbjct: 162 GHL 164


>gi|295091960|emb|CBK78067.1| Protease subunit of ATP-dependent Clp proteases [Clostridium cf.
           saccharolyticum K10]
          Length = 262

 Score = 61.9 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 68/224 (30%), Gaps = 37/224 (16%)

Query: 35  SPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYA 82
              +  +++ G+IE              + ++ ++  I  DD    +++ +++ GG    
Sbjct: 63  KNRIHLLSVIGEIEGHENLSSNTKTTKYEHILPKLAEIEDDDQVDGMLILINTVGGDVSC 122

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           G A+   I  +      +      +      ++   + IV   T ++  + +        
Sbjct: 123 GLALAEMIASLSRPTVSLVIGDSHSIGVPLAVASDYSFIVPTGTMMIHPVRMTGMVIGAV 182

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
              D   +    +            S V+  A      +              +  +   
Sbjct: 183 QTYDYFEMIQDRIL-----------SFVSEHARIAYDQLKGLML---------NTKMLTK 222

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
                  G +  G EA K GLID VGG  E    L  L   +  
Sbjct: 223 DL-----GTVLVGEEAVKEGLIDEVGGIHEALTKLNELIEKKKK 261


>gi|164688506|ref|ZP_02212534.1| hypothetical protein CLOBAR_02151 [Clostridium bartlettii DSM
           16795]
 gi|164602919|gb|EDQ96384.1| hypothetical protein CLOBAR_02151 [Clostridium bartlettii DSM
           16795]
          Length = 321

 Score = 61.9 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 69/229 (30%), Gaps = 37/229 (16%)

Query: 32  EDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGS 79
             +   +  I I G+IE              + +I  +  I  D     +++ L++ GG 
Sbjct: 116 TKDDKTIQCITIIGEIEGHFVGNPQKKATKYEHVIPMLYSIEEDPEIKGILIILNTVGGD 175

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
             AG A+   I  +  +   +      +       +   + I  + T +V  I       
Sbjct: 176 VEAGLAMAELINSISKKVVTLVLGGSHSIGVPLATAGDYSFIAPSATMIVHPIRTNGLVI 235

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            V    +      + +     +       E+                          R +
Sbjct: 236 GVNETFEYFKKMQERINEFITRTSNISEEELT-------------------------RLM 270

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                LV   G +  G EA   GLI+ VGG +E    L  L  + +  +
Sbjct: 271 HAKDELVSDVGSVLIGKEAVDCGLINEVGGLKESLTKLKELIKEDNNNE 319


>gi|291087633|ref|ZP_06346979.2| translocation-enhancing protein TepA [Clostridium sp. M62/1]
 gi|291074513|gb|EFE11877.1| translocation-enhancing protein TepA [Clostridium sp. M62/1]
          Length = 264

 Score = 61.9 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 68/224 (30%), Gaps = 37/224 (16%)

Query: 35  SPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYA 82
              +  +++ G+IE              + ++ ++  I  DD    +++ +++ GG    
Sbjct: 65  KNRIHLLSVIGEIEGHENLSSNTKTTKYEHILPKLAEIEDDDQVDGMLILINTVGGDVSC 124

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           G A+   I  +      +      +      ++   + IV   T ++  + +        
Sbjct: 125 GLALAEMIASLSRPTVSLVIGDSHSIGVPLAVASDYSFIVPTGTMMIHPVRMTGMVIGAV 184

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
              D   +    +            S V+  A      +              +  +   
Sbjct: 185 QTYDYFEMIQDRIL-----------SFVSEHARIAYDQLKGLML---------NTKMLTK 224

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
                  G +  G EA K GLID VGG  E    L  L   +  
Sbjct: 225 DL-----GTVLVGEEAVKEGLIDEVGGIHEALTKLNELIEKKKK 263


>gi|323454680|gb|EGB10550.1| hypothetical protein AURANDRAFT_3938 [Aureococcus anophagefferens]
          Length = 201

 Score = 61.9 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 83/199 (41%), Gaps = 11/199 (5%)

Query: 49  DSQELIERIER--ISRDDSATALIVSLSSPGGSA----YAGEAIFRAIQKVKNRKPVITE 102
             +E+  +++R          A+++ + SPGG           I R I +++        
Sbjct: 4   GLREVRAQVDRVLAVVRPGDEAVVL-VESPGGEVSAVGAVAGQIRRQIARLRRATRATAC 62

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK----SVKSS 158
           V  +AAS GY+ +  ++ + AA  +LVGS+GV+   P V+   ++  + +      + + 
Sbjct: 63  VDAIAASGGYMAAVVAHEVRAAPFALVGSVGVVSYVPNVQRLCERSEIDVHARTGVLTAG 122

Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEA 218
             K        V P+  +  ++ +   +  F     + R    D    L+ G  W GA A
Sbjct: 123 SDKRTVDVVGVVTPEDERKAREELRLIHDVFKSHCVKYRPRLADDIDSLASGAAWLGAHA 182

Query: 219 KKVGLIDVVGGQEEVWQSL 237
             +GL+D V   ++    L
Sbjct: 183 LSLGLVDAVDTSDDYLARL 201


>gi|304316850|ref|YP_003851995.1| peptidase S14 ClpP [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778352|gb|ADL68911.1| peptidase S14 ClpP [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 233

 Score = 61.9 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 62/198 (31%), Gaps = 25/198 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  I  +     L++ L++ GG   AG AI   I  +      I      +   
Sbjct: 61  EHIIPQLVAIEENPQIKGLLILLNTVGGDVEAGLAIAEMISSLSKPTVSIVLGGGHSIGV 120

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +S   + IV + T  +  I +      V    D        +    ++         
Sbjct: 121 PLAVSSNYSFIVPSATMTIHPIRMTGLVIGVPQTFDYFNKMQDRIVEFVIR--------- 171

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
           N +  +     +          V                G I  G EA   GLID VGG 
Sbjct: 172 NSRIKRDAFMNLMLKIGELANDV----------------GTILVGKEAVDYGLIDEVGGV 215

Query: 231 EEVWQSLYALGVDQSIRK 248
            E    L  L  ++  ++
Sbjct: 216 SEAINKLQQLIKEKENKR 233


>gi|153954066|ref|YP_001394831.1| protease [Clostridium kluyveri DSM 555]
 gi|146346947|gb|EDK33483.1| Predicted protease [Clostridium kluyveri DSM 555]
          Length = 229

 Score = 61.6 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 70/224 (31%), Gaps = 37/224 (16%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73
              S + D +  +  + I GQIE              + +I  +  +  D     ++V L
Sbjct: 24  FGMSSIADGNNKIQILPIIGQIEGHVTLPPETKATKYEHVIPNLILMENDPRVEGVLVVL 83

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           ++ GG   AG AI   I+ +      +      +       +   + I    T +V  I 
Sbjct: 84  NTVGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGVPLATASDYSFISPTATMIVHPIR 143

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           +      V           + +    ++       +++   +Q    + D          
Sbjct: 144 MNGLIIGVPQTFQYFNKMQERINEFIVRTSRITREKLSDLMLQSDDLLNDM--------- 194

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
                           G I  G +A + GLID VGG  +  + L
Sbjct: 195 ----------------GTILIGKQAVEQGLIDKVGGISDAIKKL 222


>gi|299142750|ref|ZP_07035879.1| phage protein gp18 [Prevotella oris C735]
 gi|298575779|gb|EFI47656.1| phage protein gp18 [Prevotella oris C735]
          Length = 329

 Score = 61.6 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 80/225 (35%), Gaps = 13/225 (5%)

Query: 28  SSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSA 80
               +     +A   + G +         S++L   +     +   +   + ++SPGG A
Sbjct: 91  FDDEQLPDNSIAYHRVFGTVMAESYWWFSSKQLEADLIAAEANPQISCHFLHINSPGGEA 150

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV--AAETSLVGSIGVLFQY 138
           +  + +   ++    +KP++T   +M  SAGY I C  N I        +     +   Y
Sbjct: 151 WYLDRLSETLR--NCQKPILTFYEQMCCSAGYYIGCHGNRIYALTENDYVGCIGTMCSFY 208

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
            +   F       +++  ++      +     +      +Q++++     F+  V   R 
Sbjct: 209 DFEDYFAKLGIKKVEAKATNSDLKNKTFDDLRHGNDEAFVQNILNPLNAQFLAEVRGQRK 268

Query: 199 IPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           +  +  +   +  G  +   +A ++GL D      +       +G
Sbjct: 269 LLAELPEDAPVLRGETFYTPQAVEIGLTDGSRTMAQAVAEAMTMG 313


>gi|237738215|ref|ZP_04568696.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420095|gb|EEO35142.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           mortiferum ATCC 9817]
          Length = 361

 Score = 61.6 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 83/253 (32%), Gaps = 47/253 (18%)

Query: 30  HVEDNSPHVARIAIRGQI-------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
            +++ S  V  I + G I             +   ++++   +   L + ++SPGG  + 
Sbjct: 10  EIKNISDDVGEIRVYGDICKWAWEEYGETSSVTFSKQLANLKNVKKLELKINSPGGDVFE 69

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
             A++  I++    K V   +  MAASA  +++ A+N  +  +         L       
Sbjct: 70  AVAMYHEIKRFAQGKEVTAYIDGMAASAATILTLAANKTIMGKGCYFMIHNPLMY----- 124

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                                       N + +    + ++ +    + L  E   +  D
Sbjct: 125 ------------------------MGYANVEEMNEAIEHLNKTKDNLLDLYEEKCKLSRD 160

Query: 203 KTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQ----------SLYALGVDQSIRKIKD 251
           +     D   W T  EA + G ID +   +               L  L + + ++ I  
Sbjct: 161 EIAEKMDKTTWYTAEEALQAGFIDEIANYDSSISNLNISNVFTPELKNLAIPEKLKDILQ 220

Query: 252 WNPPKNYWFCDLK 264
            N  +     DLK
Sbjct: 221 ENKEEKMTLQDLK 233


>gi|260910201|ref|ZP_05916878.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635705|gb|EEX53718.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 330

 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 13/230 (5%)

Query: 30  HVEDNSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYA 82
           + E     +A   + G +         S++L+  +     +   T   + ++SPGG A+ 
Sbjct: 93  NEEIPENSIAYHRVWGTVMSDAYWFFSSKQLVADLMAAEANPQITCHFLHVNSPGGDAWF 152

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA-AETSLVGSIGVLFQYPYV 141
            + +   ++     KP+IT    +  SAGY I+C  N + A      VG IG +  +   
Sbjct: 153 LDRLDETLRA--CTKPIITLYEHLCCSAGYYIACHGNRVYALTANDYVGCIGTMCSFYDF 210

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA-VQMMQDVVDSSYHWFVRLVSESRNIP 200
           +P+ +KLG+ +   K+     +   F ++      Q + D ++     F+  V   R+  
Sbjct: 211 QPYFEKLGIKLIEAKADKSDLKNKTFDDLRQGKPEQYVDDFLNPLNEQFLACVRSMRSGL 270

Query: 201 YD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            +      +  G  +  AEA   GL D      E       +G + +  +
Sbjct: 271 AELGDDAPVLRGETYLTAEAVTTGLCDGTRTFAEAVAEAVVMGAEYTEAE 320


>gi|37626097|gb|AAQ96473.1| putative protease [Vibrio phage VP16T]
          Length = 395

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 51/181 (28%), Gaps = 10/181 (5%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
           ++   I     DDS   +   + SPGG A     +   I+  K            AA   
Sbjct: 83  DVFAAINAAESDDSVKNIEYYIDSPGGEAEGAIKLGDMIRGTKKPSTAFVSTASSAAYLA 142

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
              +           +      +  + P    ++D                   P  E  
Sbjct: 143 ASQADKIVATSRVSRAGNIGAVLSMRRPSQSSYIDVTST---------DAPNKRPDPETE 193

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQ 230
                + +  +D  ++ F + V++ R             G       A K+G+ID +   
Sbjct: 194 EGRRVIREQALDPLHNMFAQAVADGRGTTLADVNQNFGRGGSLFAETALKMGMIDEILTA 253

Query: 231 E 231
           E
Sbjct: 254 E 254


>gi|301300713|ref|ZP_07206898.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851651|gb|EFK79350.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 234

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 70/213 (32%), Gaps = 37/213 (17%)

Query: 32  EDNSPHVARIAIRGQIEDSQELIERIERI-SRDD-----SATALIVSLSSPGGSAYAGEA 85
                ++  I+I G+I   +   E I     +DD         + + ++SPGGS + G A
Sbjct: 2   SKTQDNIGEISIYGEIVSEKWFDEEISATSFKDDLDDLGDVKTINLHINSPGGSVFEGIA 61

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I   ++  K +      V  +AAS   +I+ + + I   E S++               L
Sbjct: 62  IHNMLKMHKAKIN--VYVDGLAASIASVIAMSGDTIFMPENSMLMIHNPWTVAMGNSKEL 119

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K    +  +    +K                              L   +  I  +  +
Sbjct: 120 RKQADDLDRIAQMSVKTY----------------------------LSKSNGKIDEETLV 151

Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSL 237
            L D   W +  EA   GL D V    +   SL
Sbjct: 152 KLLDEETWLSAQEAVDYGLADEVLESNKAVASL 184


>gi|126352250|tpe|CAJ29275.1| TPA: exfoliative toxin [Staphylococcus intermedius]
          Length = 120

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 63/120 (52%)

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
           +  +AAS GY IS  ++ I A   SL GSIGV+ +       LD LG+   ++KS   K 
Sbjct: 1   MENLAASGGYYISAPADKIYAGPQSLTGSIGVISESKDYSELLDNLGIKTNTIKSGAHKD 60

Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVG 222
             S   ++  +  +++Q +   S+  FV +V E R +   K   L+DGRI++  +AK  G
Sbjct: 61  ILSSSRKMTDEEREILQSINKDSFDQFVNVVKEGRQMSESKVRELADGRIYSAQQAKSNG 120


>gi|323705387|ref|ZP_08116962.1| peptidase S14 ClpP [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535289|gb|EGB25065.1| peptidase S14 ClpP [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 232

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 62/197 (31%), Gaps = 25/197 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  I  +     L++ L++ GG   AG AI   I  +      I      +   
Sbjct: 61  EHIIPQLVAIEENPQIKGLLILLNTVGGDVEAGLAIAEMISSLSKPTVSIVLGGGHSIGV 120

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +S   + IV + T  +  I +      V    D        +    ++         
Sbjct: 121 PLAVSSNYSFIVPSATMTIHPIRMTGLVIGVPQTFDYFNKMQDRIVEFVIR--------- 171

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
           N +  +     +          V                G I  G EA   GLID VGG 
Sbjct: 172 NSRIKRDAFMNLMLKIGELANDV----------------GTILVGKEAVDYGLIDEVGGV 215

Query: 231 EEVWQSLYALGVDQSIR 247
            E  + L  L  ++  R
Sbjct: 216 SEAIEKLQQLIKEKENR 232


>gi|261856483|ref|YP_003263766.1| peptidase S49 domain protein [Halothiobacillus neapolitanus c2]
 gi|261836952|gb|ACX96719.1| Peptidase S49 domain protein [Halothiobacillus neapolitanus c2]
          Length = 347

 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 90/216 (41%), Gaps = 12/216 (5%)

Query: 37  HVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
               +   G +  S      +E+   +           ++V L S GG   A       +
Sbjct: 93  RTFVLRFSGDLRASQVGALREEVSSILSVAR--PETDEVLVCLESGGGLVTAYGLAAAQL 150

Query: 91  QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
            +++     +   V ++AAS GY+++  ++ IVAA  ++VGSIGV+ Q P +   L    
Sbjct: 151 ARLRAAGLHLTVAVDKVAASGGYMMAAVAHRIVAAPFAIVGSIGVVAQIPNIHRLLKNHD 210

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
           V I+ + +   K   +   E  P+  +  Q  ++ ++  F   + E R  P      ++ 
Sbjct: 211 VDIELLTAGQYKRTLTLLGENTPEGREKFQSQLNETHELFKSFLLEYR--PSLDLSKVAT 268

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQS-LYALGVDQ 244
           G  W G +A  +GL+D +   +E  +       V +
Sbjct: 269 GEYWFGTQAMTLGLVDELTTSDEWIERQFAERAVIE 304


>gi|169334787|ref|ZP_02861980.1| hypothetical protein ANASTE_01193 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257525|gb|EDS71491.1| hypothetical protein ANASTE_01193 [Anaerofustis stercorihominis DSM
           17244]
          Length = 272

 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 68/229 (29%), Gaps = 34/229 (14%)

Query: 29  SHVEDNSPHVARI-AIRGQIEDS--------QELIERIERISRDDSATALIVSLSSPGGS 79
                    ++ I  I G IE          + +I  I  +   D    +++ L++ GG 
Sbjct: 39  DGYNSGIQTISIIGEIEGHIEAGSPKKSTKYEHIIPMIIDVEEKDEIKGVLLILNTMGGD 98

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
             AG AI   I  +      +              S    + V+   S +     +  +P
Sbjct: 99  VEAGLAISELISGMSKPCVTLVLGGSH--------SIGVPLAVSGSYSFIVPTATMMIHP 150

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                L    +          +       E +    ++   ++ ++      +       
Sbjct: 151 IRTTGLVIGVLQSFLYFQKMQERITEFVVEHSNVDKELFNKIMLNTDELVNDM------- 203

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                     G +  G +A ++GLID VG   +    L+ L  +    K
Sbjct: 204 ----------GSVLVGEQAVEIGLIDAVGSLSDARNKLFELIREYEHEK 242


>gi|219854679|ref|YP_002471801.1| hypothetical protein CKR_1336 [Clostridium kluyveri NBRC 12016]
 gi|219568403|dbj|BAH06387.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 241

 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 70/224 (31%), Gaps = 37/224 (16%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73
              S + D +  +  + I GQIE              + +I  +  +  D     ++V L
Sbjct: 36  FGMSSIADGNNKIQILPIIGQIEGHVTLPPETKATKYEHVIPNLILMENDPRVEGVLVVL 95

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           ++ GG   AG AI   I+ +      +      +       +   + I    T +V  I 
Sbjct: 96  NTVGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGVPLATASDYSFISPTATMIVHPIR 155

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           +      V           + +    ++       +++   +Q    + D          
Sbjct: 156 MNGLIIGVPQTFQYFNKMQERINEFIVRTSRITREKLSDLMLQSDDLLNDM--------- 206

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
                           G I  G +A + GLID VGG  +  + L
Sbjct: 207 ----------------GTILIGKQAVEQGLIDKVGGISDAIKKL 234


>gi|167748876|ref|ZP_02421003.1| hypothetical protein ANACAC_03650 [Anaerostipes caccae DSM 14662]
 gi|317470284|ref|ZP_07929678.1| Clp protease [Anaerostipes sp. 3_2_56FAA]
 gi|167651846|gb|EDR95975.1| hypothetical protein ANACAC_03650 [Anaerostipes caccae DSM 14662]
 gi|316902257|gb|EFV24177.1| Clp protease [Anaerostipes sp. 3_2_56FAA]
          Length = 239

 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 61/190 (32%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I  + +    D    +++ L++ GG    G A+   I  +       T    +  S 
Sbjct: 68  EHMIPALAKAEYSDDIKGILILLNTVGGDVECGLALAEMIASLSKP----TVTLVLGGSH 123

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +  A +   +    +V S  ++            +  S +++               
Sbjct: 124 SIGVPLAVSSDYSF---IVKSATMMIHPVRSSGTFIGVLQSYRNI--------------- 165

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             K    +   +          V E      ++      G +  G +A ++GLI+ +GG 
Sbjct: 166 -EKIQDRITRFISDHSDIAEDKVEELMLHIGEQVKD--AGTVLEGEQAVELGLINEIGGM 222

Query: 231 EEVWQSLYAL 240
            E +  L  L
Sbjct: 223 SEAFAKLKEL 232


>gi|302382492|ref|YP_003818315.1| peptidase S49 [Brevundimonas subvibrioides ATCC 15264]
 gi|302193120|gb|ADL00692.1| peptidase S49 [Brevundimonas subvibrioides ATCC 15264]
          Length = 520

 Score = 60.4 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 75/204 (36%), Gaps = 15/204 (7%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGS-----AYAGEAIFRAIQKVKNRKPVITEV 103
               L+  +     D     + + L +PGG          + +  A  +       I   
Sbjct: 125 GYDTLLIAMREAMADARVRGIFLRLDTPGGVVGGGLPALAQFMREA--RESAGGKPIWVY 182

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS--SPMK 161
            +MA SAGY I+  ++ I+A     VGSIG +  +      L++ GV+I S++     +K
Sbjct: 183 ADMACSAGYWIAAQADRILAPSVGYVGSIGAVMVHEDWSGALEQDGVAITSIEFPDGGVK 242

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-NIPYDKT-----LVLSDGRIWTG 215
            E + +  ++      +Q  ++     F+  V+  R  +  +                  
Sbjct: 243 TEGAWWKALSEGGRTALQSDINQVGEMFLADVAAGRPGLDREAMLAMRADAFMAEHTDPA 302

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYA 239
                +GL D +  +E  + +L  
Sbjct: 303 RSGVTLGLADEIATEEAAFAALVD 326


>gi|150016096|ref|YP_001308350.1| peptidase S14, ClpP [Clostridium beijerinckii NCIMB 8052]
 gi|149902561|gb|ABR33394.1| peptidase S14, ClpP [Clostridium beijerinckii NCIMB 8052]
          Length = 235

 Score = 60.4 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 72/224 (32%), Gaps = 37/224 (16%)

Query: 29  SHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSP 76
           + +   +  +  ++I GQIE              + +I ++  I ++D A  L++ L++ 
Sbjct: 34  TTLATPNKRIQVLSIIGQIEGHSVLPPQTKATKYEHIIPQLIDIEQNDDAKGLLIVLNTV 93

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GG   AG AI   I+ +      I      +       S   + I  + T +V  + +  
Sbjct: 94  GGDVEAGLAISEMIRSMSKPTVSIVIGGGHSIGVPLATSADFSFITPSATMIVHPVRMNG 153

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
               V    +      + +    ++                  +         +  V   
Sbjct: 154 FVIGVSQTFEYFKKMQERINEFIVR---------TSNIKPDTLERFMLQTDDLLNDV--- 201

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                        G +  G +A   GLID VGG +E    L  L
Sbjct: 202 -------------GTMLIGKQAVDCGLIDQVGGIQEALSKLNEL 232


>gi|330946658|gb|EGH47631.1| putative inner membrane peptidase [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 165

 Score = 60.4 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 63/170 (37%), Gaps = 7/170 (4%)

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           N I++A  +++GSIGV+ Q P V   L K  +  + + +   K   + F E   K  +  
Sbjct: 3   NKIISAPFAILGSIGVVAQLPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKF 62

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           Q  +D ++  F   V+  R  P      ++ G +W G  A    L+D +   +E      
Sbjct: 63  QQDLDITHDLFKNFVASYR--PQLSIDEVATGEVWLGMAAVDKLLVDELKTSDEYLAERA 120

Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
                  +  +      +      +   + +S  +       +   Q  W
Sbjct: 121 KDADVFHLHYV-----QRKSLQERMGMAAATSADQLVTKWWGRLTQQRFW 165


>gi|154484793|ref|ZP_02027241.1| hypothetical protein EUBVEN_02511 [Eubacterium ventriosum ATCC
           27560]
 gi|149734641|gb|EDM50558.1| hypothetical protein EUBVEN_02511 [Eubacterium ventriosum ATCC
           27560]
          Length = 217

 Score = 60.4 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 75/233 (32%), Gaps = 43/233 (18%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
              +N  ++  ++I G+IE              + ++  + +I  D     L++ L++ G
Sbjct: 13  DHNNNHKNIFLLSIIGEIEGHENVASGTKATKYEHILPMLAKIEDDQDIDGLLIILNTVG 72

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G    G AI   I  +   KP ++ V   + S G  ++ +++      T  +    V   
Sbjct: 73  GDVECGLAIAEMIASL--SKPTVSLVLGGSHSIGVPLAVSADYSFIVPTGTMVIHPVRMN 130

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
                                                         + +      + E+R
Sbjct: 131 GM--------------------------FIGVPQTYEYFKKIQERINDFVINHCHIRENR 164

Query: 198 NIPYDKTLVLSD---GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
                    +     G I  G +  K G+ID +GG ++  + LY +   +S +
Sbjct: 165 FSELMNETEILTKDVGSILVGKQTVKEGIIDEIGGLKDAMKKLYEMVDRESNK 217


>gi|167469874|ref|ZP_02334578.1| signal peptide peptidase SppA, 67K type [Yersinia pestis FV-1]
          Length = 235

 Score = 60.4 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 70/200 (35%), Gaps = 28/200 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51
           + F  + I   ++ L ++    +YF + S   +       + + G I D           
Sbjct: 19  LNFTRELILNLFLALLILIGVGIYFQFQSKPVEPVKGALLVNLSGVIVDQPAINNKLRQW 78

Query: 52  ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92
                             +++E I     DD+   L++SLS   G+  +  + I +A+++
Sbjct: 79  GRELLGASSNRLQENSLFDIVETIRLAKDDDNINGLVLSLSDLTGADQSSLQYIGKALRE 138

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            ++    I  V +      Y ++  +N I  +    V   G      Y K  L+ L V+ 
Sbjct: 139 FRDTGKKIYAVGDSYNQTQYYLASFANKIYLSPQGAVDLHGFASNNLYYKSLLENLKVTT 198

Query: 153 KSVKSSPMKAEPSPFSEVNP 172
              +    K+   P    + 
Sbjct: 199 NIFRVGTYKSAVEPMIRNDM 218


>gi|145516697|ref|XP_001444237.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124411648|emb|CAK76840.1| unnamed protein product [Paramecium tetraurelia]
          Length = 241

 Score = 60.4 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 95/224 (42%), Gaps = 11/224 (4%)

Query: 35  SPHVARIAIRGQIE-DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
            P +  + I   I+ +S +L+E  E +       AL V ++S GG    GE + + I+  
Sbjct: 7   KPTIPILRINSGIDHNSAKLVE--ESLKPLTRMKALAVVVNSTGGLLVQGELMKKKIELF 64

Query: 94  --KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
              ++ P+ T   + A SAGY +    N I   E S+VGSIGVL+    +     KLG  
Sbjct: 65  AKTHKIPLYTFAEDSALSAGYYLLSIGNKIFVDEASMVGSIGVLYLNLSIDKLTRKLGFE 124

Query: 152 IKSVKSSPMKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR----NIPYDKTL 205
            +   S+            E + +   +++D        F     + R        D   
Sbjct: 125 PRKFSSNKKLFLNITGLNDERDEEMEGIVKDQFGIMRQQFFDHCDKYRPQLQKQDADVKD 184

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           ++ +  I+TG EA K GL D +G  EEV   L+     + I +I
Sbjct: 185 LIYNANIFTGIEAVKYGLADEIGNFEEVLNRLHPDCQLRDITRI 228


>gi|37626162|gb|AAQ96537.1| putative protease [Vibrio phage VP16C]
          Length = 395

 Score = 60.4 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 61/210 (29%), Gaps = 25/210 (11%)

Query: 38  VARIAIRGQIEDSQELI---------------ERIERISRDDSATALIVSLSSPGGSAYA 82
            ARI ++G +  + +                 E I+    DDS   +  ++ SPGG A  
Sbjct: 53  TARINMQGVMTSTPDFFAMLFGGGNCLYCDLFEAIDAAENDDSIKRIEYAIDSPGGEAEG 112

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
              +   I+  K     +      AA      +                  +  + P   
Sbjct: 113 AIKLGDKIRNAKKPSTALVSTASSAAYLAASQADEIVAASRVSRVGNIGAVLSMRRPSTS 172

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
            ++D                   P  E       + +  +D  ++ F + V++ R     
Sbjct: 173 VYVDVTST---------DAPNKRPDPESEEGRRVIREQSLDPLHNMFAQAVADGRGTTLS 223

Query: 203 KTLV-LSDGRIWTGAEAKKVGLIDVVGGQE 231
                   G       A K+G+ID +   E
Sbjct: 224 DVNQNFGRGGSLFAETALKMGMIDKILTAE 253


>gi|18310659|ref|NP_562593.1| Clp protease [Clostridium perfringens str. 13]
 gi|18145340|dbj|BAB81383.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 247

 Score = 60.4 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 80/232 (34%), Gaps = 37/232 (15%)

Query: 29  SHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSP 76
              +    ++  + I GQIE              + +I ++  I ++D    ++  L++ 
Sbjct: 41  PEHKKEDSNIQVLTIIGQIEGHSVQPPQTKTTKYEHMIPQLIDIEQNDRIKGILFVLNTV 100

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GG   AG AI   I+ +  +KP ++ V     S G  ++ AS     + ++ +    +  
Sbjct: 101 GGDVEAGLAIAEMIRSL--KKPTVSLVIGGGHSIGVPLATASQYSFISPSATMIIHPIRM 158

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                                        P +      +Q   +            V + 
Sbjct: 159 NGLV----------------------IGVPQTFNYFNKMQERINDFIIRTSEIKLDVLKK 196

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
             +  D+ L    G I  G EA K GLI+ VGG +E    L +L    ++  
Sbjct: 197 MMMQTDELLN-DMGTILVGEEAVKCGLINEVGGVKEALDKLNSLIEAYNVEP 247


>gi|110799331|ref|YP_696364.1| Clp protease [Clostridium perfringens ATCC 13124]
 gi|168211435|ref|ZP_02637060.1| clp protease [Clostridium perfringens B str. ATCC 3626]
 gi|168214490|ref|ZP_02640115.1| clp protease [Clostridium perfringens CPE str. F4969]
 gi|168216964|ref|ZP_02642589.1| clp protease [Clostridium perfringens NCTC 8239]
 gi|182626367|ref|ZP_02954121.1| clp protease [Clostridium perfringens D str. JGS1721]
 gi|110673978|gb|ABG82965.1| clp protease [Clostridium perfringens ATCC 13124]
 gi|170710555|gb|EDT22737.1| clp protease [Clostridium perfringens B str. ATCC 3626]
 gi|170714034|gb|EDT26216.1| clp protease [Clostridium perfringens CPE str. F4969]
 gi|177908318|gb|EDT70866.1| clp protease [Clostridium perfringens D str. JGS1721]
 gi|182380948|gb|EDT78427.1| clp protease [Clostridium perfringens NCTC 8239]
          Length = 229

 Score = 60.0 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 80/232 (34%), Gaps = 37/232 (15%)

Query: 29  SHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSP 76
              +    ++  + I GQIE              + +I ++  I ++D    ++  L++ 
Sbjct: 23  PEHKKEDSNIQVLTIIGQIEGHSVQPPQTKTTKYEHMIPQLIDIEQNDRIKGILFVLNTV 82

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GG   AG AI   I+ +  +KP ++ V     S G  ++ AS     + ++ +    +  
Sbjct: 83  GGDVEAGLAIAEMIRSL--KKPTVSLVIGGGHSIGVPLATASQYSFISPSATMIIHPIRM 140

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                                        P +      +Q   +            V + 
Sbjct: 141 NGLV----------------------IGVPQTFNYFNKMQERINDFIIRTSEIKLDVLKK 178

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
             +  D+ L    G I  G EA K GLI+ VGG +E    L +L    ++  
Sbjct: 179 MMMQTDELLN-DMGTILVGEEAVKCGLINEVGGVKEALDKLNSLIEAYNVEP 229


>gi|218528332|ref|YP_002419148.1| peptidase S49 [Methylobacterium chloromethanicum CM4]
 gi|218520635|gb|ACK81220.1| peptidase S49 [Methylobacterium chloromethanicum CM4]
          Length = 299

 Score = 60.0 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 84/223 (37%), Gaps = 17/223 (7%)

Query: 33  DNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGS 79
             +  VA + I G I               +  +   +     +    A+++ + SPGGS
Sbjct: 69  TTADGVAIVPITGPIFPRANLMTEMSGSVSATMVANDLRLAQANPDVGAIMLLVDSPGGS 128

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
                A+   I  ++ RK V+  V   AASA Y ++ A++ +V  +T +VGSIGV+    
Sbjct: 129 PTGMNALADQIYAMRGRKRVLAHVSGAAASAAYWLATAASELVVEKTGMVGSIGVVAAIS 188

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                     +SI+ V SS     P P           ++ ++D     F+  V+  R  
Sbjct: 189 KQVEPDASGSLSIEIVSSSAPNKRPDPQ---TDDGAAEIRAILDGIEAQFIADVARGRGT 245

Query: 200 PYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
              K       G +  GA A   G+ D V   E     L    
Sbjct: 246 TVAKVKSDFGAGGMKIGAAAVAAGMADRVQTYERSLSELARTA 288


>gi|303239203|ref|ZP_07325732.1| peptidase S49 [Acetivibrio cellulolyticus CD2]
 gi|302593248|gb|EFL62967.1| peptidase S49 [Acetivibrio cellulolyticus CD2]
          Length = 269

 Score = 60.0 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 66/226 (29%), Gaps = 33/226 (14%)

Query: 43  IRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           I G I           + +I ++  I        L++ L++ GG   AG AI   I    
Sbjct: 69  IEGHIVLPPQNKTTKYEHVIPQLVAIEESKEIDGLLLILNTVGGDVEAGLAIAEMIAS-- 126

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
                        +     +       +    ++      +     +     +L   +  
Sbjct: 127 ------------MSKPTVSLVLGGGHSIGVPMAVSTKYSFIAPSATMTIHPIRLNGMVIG 174

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
           V           F ++  + VQ +    + S   F  L+ +      +       G I  
Sbjct: 175 VP-----QTFEYFDKMQERVVQFVAKNSNISKETFRSLMLK-TGELANDV-----GTILF 223

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
           G EA   GLID  GG  E  + LY L   +       +   K    
Sbjct: 224 GEEAVTQGLIDGTGGLYEALKKLYELIELKKKENPNSYIDSKEGLQ 269


>gi|291542999|emb|CBL16109.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ruminococcus
           bromii L2-63]
          Length = 269

 Score = 60.0 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 25/207 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I  +  +  D+    L+V +++ GG   AG AI   I     +KP ++ V     S 
Sbjct: 84  EHVIPLLVSVEEDERIDGLLVLINTVGGDVEAGLAIAEVIS--GMKKPTVSIVLGGGHSI 141

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  ++ A+     A+++ +    V      +                         F  +
Sbjct: 142 GIPLAVAAKKSFIAKSASMTVHPVRTTGLTLGVP-----------------QTFEYFQRM 184

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             +    + +  + +   + +LV  +             G I  G EA + GLID VG  
Sbjct: 185 QDRITTFVAENSNITKDRYNQLV-LNTGELVMDI-----GTILEGEEAVEEGLIDEVGTV 238

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKN 257
            +   +LY L  +    K K       
Sbjct: 239 SDAIDALYDLIKESKESKPKSAKSRSK 265


>gi|110803390|ref|YP_698964.1| Clp protease [Clostridium perfringens SM101]
 gi|168207521|ref|ZP_02633526.1| clp protease [Clostridium perfringens E str. JGS1987]
 gi|169342742|ref|ZP_02863782.1| clp protease [Clostridium perfringens C str. JGS1495]
 gi|110683891|gb|ABG87261.1| putative endopeptidase [Clostridium perfringens SM101]
 gi|169299248|gb|EDS81318.1| clp protease [Clostridium perfringens C str. JGS1495]
 gi|170661146|gb|EDT13829.1| clp protease [Clostridium perfringens E str. JGS1987]
          Length = 229

 Score = 60.0 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 80/232 (34%), Gaps = 37/232 (15%)

Query: 29  SHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSP 76
              +    ++  + I GQIE              + +I ++  I ++D    ++  L++ 
Sbjct: 23  PEHKKEDSNIQVLTIIGQIEGHSVQPPQTKTTKYEHMIPQLIDIEQNDRIKGILFVLNTV 82

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GG   AG AI   I+ +  +KP ++ V     S G  ++ AS     + ++ +    +  
Sbjct: 83  GGDVEAGLAIAEMIRSL--KKPTVSLVIGGGHSIGVPLATASKYSFISPSATMIIHPIRM 140

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                                        P +      +Q   +            V + 
Sbjct: 141 NGLV----------------------IGVPQTFNYFNKMQERINDFIIRTSEIKLDVLKK 178

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
             +  D+ L    G I  G EA K GLI+ VGG +E    L +L    ++  
Sbjct: 179 MMMQTDELLN-DMGTILVGEEAVKCGLINEVGGVKEALDKLNSLIEAYNVEP 229


>gi|28210969|ref|NP_781913.1| ATP-dependent Clp protease proteolytic subunit [Clostridium tetani
           E88]
 gi|28203408|gb|AAO35850.1| ATP-dependent clp protease proteolytic subunit [Clostridium tetani
           E88]
          Length = 255

 Score = 59.6 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 68/227 (29%), Gaps = 37/227 (16%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
                +  +  + I GQ+E              + +I ++  I  DD+   ++V L++ G
Sbjct: 52  ETPKPNDRIYILPIIGQVEGHAAVPPQNKSTKYEHVIPQLVNIQMDDNIEGVLVILNTVG 111

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G   AG AI   I  +      +      +       +   + I    T ++  I +   
Sbjct: 112 GDVEAGLAIAEMIGSLGKPTVSLVIGGGHSIGVPLATASNYSFISPTATMIIHPIRMNGL 171

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
              V    +        +    ++        +    ++    + D              
Sbjct: 172 ILGVPQTFEYFDKMQDRIIEFIVRTSKMDKETIKDMMIKTDNLLNDM------------- 218

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
                       G I  G EA   GLID VGG +E    L  L   +
Sbjct: 219 ------------GTILIGKEAVDCGLIDEVGGIKEALNKLEELIKKE 253


>gi|300214522|gb|ADJ78938.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           salivarius CECT 5713]
          Length = 234

 Score = 59.6 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 72/213 (33%), Gaps = 37/213 (17%)

Query: 32  EDNSPHVARIAIRGQIEDSQELIERIERI-SRDD-----SATALIVSLSSPGGSAYAGEA 85
                ++  I+I G+I   +   E I     +DD         + + ++SPGGS + G A
Sbjct: 2   SKTQDNIGEISIYGEIVSEKWFDEEISATSFKDDLDDLGDVKTINLHINSPGGSVFEGIA 61

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I   ++   N+  +   V  +AAS   +I+ + + I   E S++               L
Sbjct: 62  IHNMLK--MNKAKINVYVDGLAASIASVIAMSGDTIFMPENSMLMIHNPWTVAMGNSKEL 119

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            K    +  +  + +K                              L   +  I  +  +
Sbjct: 120 RKQADDLDRIAQASVKTY----------------------------LSKSNGKIDEETLV 151

Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSL 237
            L D   W +  EA   GL D V    +   SL
Sbjct: 152 KLLDEETWLSAQEAVDYGLADEVLESNKAVASL 184


>gi|197303368|ref|ZP_03168407.1| hypothetical protein RUMLAC_02090 [Ruminococcus lactaris ATCC
           29176]
 gi|197297366|gb|EDY31927.1| hypothetical protein RUMLAC_02090 [Ruminococcus lactaris ATCC
           29176]
          Length = 259

 Score = 59.6 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 77/240 (32%), Gaps = 39/240 (16%)

Query: 38  VARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           +  + I G+IE              + L+ R+     +D    +++ L++ GG   AG  
Sbjct: 47  IQLLTIIGEIEGHENVSGNTKATKYEHLLPRLAEAEENDEIEGVLILLNTMGGDVEAGLG 106

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I   I  +      +      +      +S   + IV + T ++  +     +  V    
Sbjct: 107 IAEMIASLGKPTVSLVLGGSHSIGGPLAVSADYSFIVPSGTMIIHPVRSSGMFIGVIQSY 166

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
             +  +   +              +    +   Q V D                      
Sbjct: 167 RNMERTQDRITRFIASHSHISQERIVELMLDSTQLVKDV--------------------- 205

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
               G +  G EA + G+ID VGG  E +Q L+ L      R+ K    P +++    KN
Sbjct: 206 ----GTMLEGEEAVREGMIDEVGGIHEAFQKLHEL--IDEERRKKKQEKPDHFFDDTKKN 259


>gi|125973612|ref|YP_001037522.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium
           thermocellum ATCC 27405]
 gi|256003432|ref|ZP_05428423.1| peptidase S14 ClpP [Clostridium thermocellum DSM 2360]
 gi|281417817|ref|ZP_06248837.1| peptidase S14 ClpP [Clostridium thermocellum JW20]
 gi|125713837|gb|ABN52329.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium
           thermocellum ATCC 27405]
 gi|255992722|gb|EEU02813.1| peptidase S14 ClpP [Clostridium thermocellum DSM 2360]
 gi|281409219|gb|EFB39477.1| peptidase S14 ClpP [Clostridium thermocellum JW20]
 gi|316940146|gb|ADU74180.1| peptidase S14 ClpP [Clostridium thermocellum DSM 1313]
          Length = 257

 Score = 59.6 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 84/234 (35%), Gaps = 37/234 (15%)

Query: 27  WSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLS 74
             + +  +  ++  + + GQIE              + +I ++  I   +    L++ L+
Sbjct: 34  GKTSISSSKGNIHCLTVIGQIEGHMVLPPQNKTTKYEHVIPQLVAIEESEEIDGLLLILN 93

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           + GG   AG AI   I  +   KP ++ V     S G  ++ A+N    A ++ +    +
Sbjct: 94  TVGGDVEAGLAIAEMIASM--SKPTVSLVLGGGHSIGVPMAVATNYSFIAPSATMTIHPI 151

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
                 +                         F  +  + VQ +    + S   F  L+ 
Sbjct: 152 RLNGMVIGVP-----------------QTYEYFDRMQDRVVQFVTKNSNISKERFRELML 194

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           +      +       G I  G EA K GLID +GG +E  + LY L   +   K
Sbjct: 195 K-TGELANDV-----GTILFGEEAVKYGLIDEMGGLKEALKKLYELIAKRKKNK 242


>gi|326202158|ref|ZP_08192028.1| peptidase S49 [Clostridium papyrosolvens DSM 2782]
 gi|325987953|gb|EGD48779.1| peptidase S49 [Clostridium papyrosolvens DSM 2782]
          Length = 251

 Score = 59.6 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 70/213 (32%), Gaps = 33/213 (15%)

Query: 43  IRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           I G I           + +I ++  I        L++ L++ GG   AG AI   +  + 
Sbjct: 53  IEGHILLPPHNKTTKYEHIIPQLVAIEESKQIEGLLLVLNTVGGDVEAGLAISEMVSSL- 111

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
             KP ++ V     S G  ++ ++N    A ++ +    +      +             
Sbjct: 112 -SKPTVSLVLGGGHSIGVPMAVSANHSFIASSATMTIHPIRMNGLVIGVP---------- 160

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
                       F ++  + V  +          F  L+ +      +       G +  
Sbjct: 161 -------QTYEYFDKMQERVVNFVCSHSGIKREKFRELMLK-TGELANDV-----GTVLF 207

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           G EA + GLID VGG  +  + L  L   +   
Sbjct: 208 GEEATQSGLIDQVGGLSDAIKKLNELIEIRRKE 240


>gi|302386512|ref|YP_003822334.1| peptidase S14 ClpP [Clostridium saccharolyticum WM1]
 gi|302197140|gb|ADL04711.1| peptidase S14 ClpP [Clostridium saccharolyticum WM1]
          Length = 260

 Score = 59.2 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 70/223 (31%), Gaps = 37/223 (16%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
               N   +  I I G++E                ++ ++  I  DDS   L+V L++ G
Sbjct: 57  DDNANKRKIHLITIIGEVEGHENLSGNSKATKYDHILPKLAEIEDDDSVEGLLVLLNTSG 116

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G   AG AI   I  +      +      +      +    + IV   T ++  + +   
Sbjct: 117 GDVDAGLAIAEMIASLSIPTVSLVLGGSHSIGVPLAVCTDYSFIVPTGTMMIHPVRMTGM 176

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
                   +   +    + S         + ++                          R
Sbjct: 177 VIGASQTYEYFEMIQDRILSFVSNHAKIAYDQL-------------------------KR 211

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
            +   + L    G +  G E  K GLI+ VGG ++  + LY L
Sbjct: 212 LMLNTEMLTRDLGTVLVGEETVKEGLINEVGGIKDALKKLYEL 254


>gi|15895087|ref|NP_348436.1| periplasmic serine protease [Clostridium acetobutylicum ATCC 824]
 gi|15024785|gb|AAK79776.1|AE007690_3 Periplasmic serine protease, YMFB B.subtilis ortholog [Clostridium
           acetobutylicum ATCC 824]
 gi|325509225|gb|ADZ20861.1| Periplasmic serine protease [Clostridium acetobutylicum EA 2018]
          Length = 226

 Score = 59.2 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 25/193 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           +E+I R+  +  +     +++ L++ GG   AG AI   I+ +      +      +   
Sbjct: 56  EEIIPRLMNVEYNPEIKGVLIILNTIGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGV 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
               S   + I    T ++  I +      V           + +    ++        +
Sbjct: 116 PLATSSNYSFISPTATMIIHPIRMNGLIIGVPQTFQYFNKMQERISEFIVRTSKIKKETL 175

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
               ++  + + D                          G I  G +A K GLID VGG 
Sbjct: 176 TELMLKTDELLNDM-------------------------GTILIGKQAVKYGLIDSVGGI 210

Query: 231 EEVWQSLYALGVD 243
           +E    L  L  D
Sbjct: 211 KEALSKLKELIED 223


>gi|325263865|ref|ZP_08130598.1| Clp protease [Clostridium sp. D5]
 gi|324030903|gb|EGB92185.1| Clp protease [Clostridium sp. D5]
          Length = 242

 Score = 59.2 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 73/230 (31%), Gaps = 37/230 (16%)

Query: 31  VEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGG 78
            E    ++  + I G+IE              + LI R+     +D    +++ L++ GG
Sbjct: 30  KESGRHNIQLMTIIGEIEGHEAVSGNTKATKYEHLIPRLAEAEDNDDIEGILILLNTLGG 89

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
              AG AI   I  +      +      +      +S   + IV + T +V  +     +
Sbjct: 90  DVEAGLAIAEMIASLSKPTVSLVLGGSHSIGGPLAVSADYSFIVPSGTMIVHPVRSTGMF 149

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V      +  +   +              +    +   Q V D               
Sbjct: 150 IGVIQSYRNMEKTQDRITRFIASHSNITQERLEKLMLDSSQLVKDV-------------- 195

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                      G +  G EA K GLID VGG  +    L+++  D+   +
Sbjct: 196 -----------GTLLEGEEAVKEGLIDEVGGISQALSKLHSMIEDRKKEE 234


>gi|90961762|ref|YP_535678.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus phage
           Sal1]
 gi|90820956|gb|ABD99595.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus phage
           Sal1]
          Length = 249

 Score = 58.9 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 73/215 (33%), Gaps = 37/215 (17%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQELIERIERI-SRDD-----SATALIVSLSSPGGSAYAG 83
            +     ++  I+I G+I   +   E I     +DD         + + ++SPGGS + G
Sbjct: 15  KMSKTQDNIGEISIYGEIVSEKWFDEEISATSFKDDLDDLGDVKTINLHINSPGGSVFEG 74

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
            AI   ++   N+  +   V  +AAS   +I+ + + I   E S++              
Sbjct: 75  IAIHNMLK--MNKAKINVYVDGLAASIASVIAMSGDTIFMPENSMLMIHNPWTVAMGNSK 132

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K    +  +  + +K                              L   +  I  + 
Sbjct: 133 ELRKQADDLDRIAQASVKTY----------------------------LSKSNGKIDEET 164

Query: 204 TLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSL 237
            + L D   W +  EA   GL D V    +   SL
Sbjct: 165 LVKLLDEETWLSAQEAVDYGLADEVLESNKAVASL 199


>gi|310790485|gb|EFQ26018.1| ATP-dependent Clp protease proteolytic subunit [Glomerella
           graminicola M1.001]
          Length = 248

 Score = 58.9 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 67/212 (31%), Gaps = 26/212 (12%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G I+D  S  ++ ++  +  D    A+ + ++SPGGS  +G AI+  +  +K+  
Sbjct: 59  IVCLNGAIDDTVSASIVAQLLWLESDSPDKAITMYINSPGGSVSSGLAIYDTMTYIKSPV 118

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      + +A  L    +    A   S V     L                      
Sbjct: 119 STVCLGAASSMAALLLTGGEAGKRYALPHSSVMIHQPLG--------------------- 157

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216
                        N       Q       H       E      ++   + +  +  T  
Sbjct: 158 GTQGQASDILIYANQIQRIRKQINEIMKRHINKSFGQE--KYSLEEIHDMMERDKYLTAE 215

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           EAK++G+ID +  + E          D+   K
Sbjct: 216 EAKEIGVIDEILTRREEKDLKEKDSTDEKKTK 247


>gi|317132346|ref|YP_004091660.1| peptidase S14 ClpP [Ethanoligenens harbinense YUAN-3]
 gi|315470325|gb|ADU26929.1| peptidase S14 ClpP [Ethanoligenens harbinense YUAN-3]
          Length = 319

 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 64/190 (33%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  +  D     L++ L++ GG   AG AI   I     +KP ++ V     S 
Sbjct: 90  EHVIPQIVAVEEDPRIEGLLIVLNTVGGDVEAGLAIAELIS--GMKKPTVSLVLGGGHSI 147

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  ++  ++    A T+ +    V      V              +     A+ S  +  
Sbjct: 148 GVPLAICASESFIAPTATMTIHPVRMNGIVVGVPQTLSYFDKMQDRIGKFVAQNSHIAPE 207

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             K + M    +                        L  G +  G EA + GLID  GG 
Sbjct: 208 RFKELMMHTGELV-----------------------LDVGTVLEGEEAVREGLIDHTGGL 244

Query: 231 EEVWQSLYAL 240
            +    LY +
Sbjct: 245 SDAISCLYRM 254


>gi|302392320|ref|YP_003828140.1| peptidase S49 [Acetohalobium arabaticum DSM 5501]
 gi|302204397|gb|ADL13075.1| peptidase S49 [Acetohalobium arabaticum DSM 5501]
          Length = 282

 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 68/220 (30%), Gaps = 37/220 (16%)

Query: 41  IAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           I I GQIE              + LI ++  + ++     +I++L++ GG   AG AI  
Sbjct: 61  INIVGQIEGHRSLPPKNKTTKYEHLIPQLVAVEQNPKVKGVIITLNTVGGDIEAGLAISE 120

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
            +  +              +     +       +    ++      + +   +     +L
Sbjct: 121 MLSSL--------------SKPTVSLVLGGGHSIGGPIAVATDKSFIAETATMTIHPIRL 166

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
              +  V  +    +      +N  +        D     F            +    + 
Sbjct: 167 TGKVIGVPQTYDYLDKMQDRVINFVSRHSNISNEDFRNLMFR---------TGELVRDV- 216

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            G +  G EA   G+ID VGG  +  ++L      +   K
Sbjct: 217 -GTVLIGEEAVDKGMIDEVGGLSQAIKALKEKIDAEEDNK 255


>gi|118442934|ref|YP_878200.1| ATP-dependent Clp protease proteolytic subunit [Clostridium novyi
           NT]
 gi|118133390|gb|ABK60434.1| ATP-dependent clp protease proteolytic subunit [Clostridium novyi
           NT]
          Length = 233

 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 68/221 (30%), Gaps = 39/221 (17%)

Query: 40  RIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
            + I GQIE              + LI ++  I  +DS   +++ L++ GG   AG AI 
Sbjct: 37  VLPIIGQIEGHSALPPQSKATKYEHLIPQLVDIETNDSIEGVLIILNTVGGDVEAGLAIA 96

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             I  +      +      +       S   + I  + T ++  I +      V    + 
Sbjct: 97  EMINSLSKPSVSLVIGGGHSIGVPLATSADYSFISPSATMIIHPIRMNGLVLGVPQTFEY 156

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
                + +                          +D             R +      +L
Sbjct: 157 FNKMQERI--------------------------IDFITRTSKMKNETFRKLMLQTDDLL 190

Query: 208 SD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           +D G I  G +A   GLID VGG       L  +  +   R
Sbjct: 191 NDMGTILIGKQAVDYGLIDEVGGLSSAINKLEDIIDNGDKR 231


>gi|295696208|ref|YP_003589446.1| peptidase S14 ClpP [Bacillus tusciae DSM 2912]
 gi|295411810|gb|ADG06302.1| peptidase S14 ClpP [Bacillus tusciae DSM 2912]
          Length = 257

 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 65/212 (30%), Gaps = 37/212 (17%)

Query: 41  IAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           I I GQIE              + +I ++    ++D    +++ L++ GG   AG AI  
Sbjct: 54  ITIIGQIEGHIILPPQNKTTKYEHVIPQLVAAEQNDKVKGVLIVLNTVGGDVEAGLAIAE 113

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
            I  +   KP +T V     S G  I+ A      AE++ +    +              
Sbjct: 114 MIATLT--KPTVTLVLGGGHSIGVPIAVAGQYSFIAESATMTIHPIRLTGMV-------- 163

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
                        +              ++     S   +   ++               
Sbjct: 164 --------IGAPASWEYLERMQERVVRFVVDHSKISEAQFRELMMKTGELAR-------D 208

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
            G    G +A + GLID +GG       L  +
Sbjct: 209 IGTTVVGKDAVRYGLIDEIGGIGRALGKLREM 240


>gi|121535282|ref|ZP_01667096.1| peptidase S14, ClpP [Thermosinus carboxydivorans Nor1]
 gi|121306167|gb|EAX47095.1| peptidase S14, ClpP [Thermosinus carboxydivorans Nor1]
          Length = 260

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 67/238 (28%), Gaps = 37/238 (15%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALI 70
           +    SS V     ++  + I GQIE              + ++ +I  I ++     L+
Sbjct: 44  IQVMGSSEVPTAKSNIHVMTIIGQIEGHMVLPPQNKTTKYEHVMPQIAAIEQNPDIEGLL 103

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + L++ GG   AG AI   I  +      +      +      +S               
Sbjct: 104 LLLNTVGGDVEAGLAIAELIASLSKPTVSLVLGGGHSIGVPIAVSAN------------- 150

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
                + +      +    + +  +      +              ++     +   W  
Sbjct: 151 -----YSFIVESASMTIHPIRLTGLVIGAPSSFDYLEKMQERINRFVVSHSKITEKKWKE 205

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            L                 G    G +A + GLID +GG  +    L  L   Q   K
Sbjct: 206 LLFKTGELSR-------DIGTNVVGRDAVRYGLIDELGGMAQAIAKLQELIRTQKETK 256


>gi|323487027|ref|ZP_08092339.1| translocation-enhancing protein TepA [Clostridium symbiosum
           WAL-14163]
 gi|323692069|ref|ZP_08106316.1| peptidase S14 ClpP [Clostridium symbiosum WAL-14673]
 gi|323399675|gb|EGA92061.1| translocation-enhancing protein TepA [Clostridium symbiosum
           WAL-14163]
 gi|323503869|gb|EGB19684.1| peptidase S14 ClpP [Clostridium symbiosum WAL-14673]
          Length = 269

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 71/230 (30%), Gaps = 37/230 (16%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
                  H+  I+I G+IE              + ++ ++  I        ++V +++ G
Sbjct: 65  EEGGEGAHIHLISIIGEIEGHENLSGNTKTTKYEHILPKLAEIEDSREVDGVLVMINTVG 124

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G    G A+   I  +      +      +      ++   + IV   T ++  + +   
Sbjct: 125 GDVSCGLALAEMIASLSKPTVSLVIGDSHSIGVPLAVATDYSFIVPTGTMMIHPVRMSGT 184

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
                   D   +    + +         + ++                          R
Sbjct: 185 VIGAVQTYDYFEMIQDRILNFVSGHSQIAYDQL-------------------------RR 219

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            +   + L    G +  G++A K GLI  VGG  E  Q L  + +++   
Sbjct: 220 LMLNTEMLTKDLGTVLVGSDAVKEGLICEVGGIREALQKLNRMVLERKEI 269


>gi|323179369|gb|EFZ64937.1| head-tail preconnector protein GP5 domain protein [Escherichia coli
           1180]
          Length = 360

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 1/151 (0%)

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
            I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSIGV+  +      L + 
Sbjct: 1   MIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYAGHLAQA 60

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
           GV I  + +   K + + F  +  +  Q MQ  VD+++  F   V+    +  +     +
Sbjct: 61  GVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRVDAAHRMFAEKVAMYTGLSVEAV-TGT 119

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
           +  ++ G  A K GL D +    +    + A
Sbjct: 120 EAAVFEGQSAIKAGLADELINASDAISVMAA 150


>gi|160939827|ref|ZP_02087174.1| hypothetical protein CLOBOL_04718 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437261|gb|EDP15026.1| hypothetical protein CLOBOL_04718 [Clostridium bolteae ATCC
           BAA-613]
          Length = 315

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 71/223 (31%), Gaps = 37/223 (16%)

Query: 35  SPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYA 82
              +  I I G++E                ++ ++  I  DDS   L+V L++ GG   A
Sbjct: 115 QRKIHLITIIGEVEGHENSSGSSKTTKYDHILPKLAEIEDDDSVDGLLVLLNTSGGDVDA 174

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           G AI   I  +      +      +      +S   + IV + T ++  + +        
Sbjct: 175 GLAIAEMIASLSLPTVSLVLGGSHSIGVPLAVSTNYSFIVPSGTMMIHPVRMTGMVIGTS 234

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
              +   +    + +         + ++            D                   
Sbjct: 235 QTYEYFEMIQDRILTFVSNHADIAYDQLRELMHNTKMLTRDL------------------ 276

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
                  G +  G +A + GLI+ VGG +E    LYA+  D+ 
Sbjct: 277 -------GTVLVGTQAVEAGLINQVGGIKEALGKLYAMIDDRE 312


>gi|331671242|ref|ZP_08372061.1| minor capsid protein C (GPC) [Escherichia coli TA271]
 gi|331061535|gb|EGI33475.1| minor capsid protein C (GPC) [Escherichia coli TA271]
          Length = 294

 Score = 58.1 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 1/138 (0%)

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
           KPV    ++M  SAG L++ A++  +  +T+  GSIGV+  +      L+K GV I  + 
Sbjct: 5   KPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIY 64

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216
           S   K + +P+S +     + +Q  +D++   F + VS    +     L   +  +++G 
Sbjct: 65  SGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVLDT-EAAVYSGQ 123

Query: 217 EAKKVGLIDVVGGQEEVW 234
           EA   GL D +    +  
Sbjct: 124 EAIDAGLADELVNSTDAI 141


>gi|297734120|emb|CBI15367.3| unnamed protein product [Vitis vinifera]
          Length = 150

 Score = 58.1 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 1/111 (0%)

Query: 146 DKLGVSIKSVKSSPMKAEPSPF-SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           +K+G + + +         +       P   ++      ++Y  F    + SR++  DK 
Sbjct: 30  EKIGFNKEIISRGRFAELTAAELRPFRPDEAELFAKSAWNAYKQFRDKTAFSRSMAVDKM 89

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
              + GR+WTG +A   GL+D +GG                   +  +  P
Sbjct: 90  EEKAQGRVWTGKDAASRGLVDAIGGLSRAVAIAKQKANIPQDAPVGSYVYP 140


>gi|154502755|ref|ZP_02039815.1| hypothetical protein RUMGNA_00569 [Ruminococcus gnavus ATCC 29149]
 gi|153796638|gb|EDN79058.1| hypothetical protein RUMGNA_00569 [Ruminococcus gnavus ATCC 29149]
          Length = 229

 Score = 58.1 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 71/228 (31%), Gaps = 37/228 (16%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
           +   +  ++  + I G+IE              + LI R+  +  DD    +++ L++ G
Sbjct: 26  NGNGHKANIQLLTIIGEIEGHEAVSGNTKATKYEHLIPRLAEVEDDDEVDGVLILLNTLG 85

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G   AG AI   I  +      +      +      +S   + IV + T +V  +     
Sbjct: 86  GDVEAGLAIAEMIASLSKPTVSLVLGGSHSIGGPLAVSADYSFIVPSGTMIVHPVRSSGM 145

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +  V      +  +   +              +    +   Q V D              
Sbjct: 146 FIGVIQSYRNMEKTQDRITRFIAAHSQITKERLEELMLDSTQLVKDV------------- 192

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
                       G +  G +A + G+ID VGG     + L  +   + 
Sbjct: 193 ------------GTMLEGEDAVREGMIDEVGGISMALKKLREMIRQKK 228


>gi|239626582|ref|ZP_04669613.1| peptidase S14 ClpP [Clostridiales bacterium 1_7_47_FAA]
 gi|239516728|gb|EEQ56594.1| peptidase S14 ClpP [Clostridiales bacterium 1_7_47FAA]
          Length = 252

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 68/223 (30%), Gaps = 37/223 (16%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
                   +  I I G++E                ++ ++  I  DDS   L+V L++ G
Sbjct: 47  EDNQKQRKIHLITIIGEVEGHENSSGSSKTTKYDHILPKLAEIEDDDSVDGLLVLLNTSG 106

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G   AG AI   I  +      +      +      +S   + IV + T ++  + +   
Sbjct: 107 GDVDAGLAIAEMIASLSLPTVSLVLGGSHSIGVPLAVSTNYSFIVPSGTMMIHPVRMTGM 166

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
                   +   +    + +         + ++            D              
Sbjct: 167 VIGTAQTYEYFEMIQDRILTFVASHADIAYDQLRDLMHNTKMLTRDL------------- 213

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                       G +  G +A + GLI+ VGG +E    LY +
Sbjct: 214 ------------GTVLVGEQAVEAGLINQVGGIKEALGKLYEM 244


>gi|253682717|ref|ZP_04863514.1| putative Clp protease [Clostridium botulinum D str. 1873]
 gi|253562429|gb|EES91881.1| putative Clp protease [Clostridium botulinum D str. 1873]
          Length = 231

 Score = 57.7 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 69/221 (31%), Gaps = 39/221 (17%)

Query: 40  RIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
            + I GQIE              + +I ++  I  +D+   +++ L++ GG   AG AI 
Sbjct: 35  VLPIIGQIEGHSVLPPQSKATKYEHVIPQLVDIEMNDAIEGVLIILNTVGGDVEAGLAIA 94

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             I  +      +      +           + I  + T +V  I +      V    + 
Sbjct: 95  EMISSLSKPSVSLVIGGGHSIGVPLATCANYSFISPSATMIVHPIRMNGLVLGVPQTFEY 154

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
                + +     +        +                          R++      +L
Sbjct: 155 FNKMQERIIDFIKRTSKINKDTL--------------------------RSLMLQTDELL 188

Query: 208 SD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           +D G I  G +A   GLID VGG       L  +   +S +
Sbjct: 189 NDMGTILIGKQAVDYGLIDEVGGLSSAINKLEEIIDSKSKK 229


>gi|296120997|ref|YP_003628775.1| hypothetical protein Plim_0730 [Planctomyces limnophilus DSM 3776]
 gi|296013337|gb|ADG66576.1| protein of unknown function DUF107 [Planctomyces limnophilus DSM
           3776]
          Length = 828

 Score = 57.7 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/285 (11%), Positives = 75/285 (26%), Gaps = 25/285 (8%)

Query: 26  SWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           S      +    V  I + G I   +   L  +I R         LI+ + SPGG A   
Sbjct: 347 SMRIRPAEEQQKVGIIRLDGVINQMNGTFLRRQIARYQA-QGVELLIIEIDSPGGLATVS 405

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
             +   I  +   K               +   A   +   E  +  +  +    P    
Sbjct: 406 SELAELIASLSEEKIRTVAWI----PRQAISGAAMVALGCDEIYMAPNAKMGDVQPIEAR 461

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
             +        V +       +   +               +  + +R  S  R     +
Sbjct: 462 PGEAFERVPDKVMTVIRATLLALAKQKGRPEAIAAAMADRGTRVFRMREKSSGRVWFMTE 521

Query: 204 TLVLSDGRIW-----------------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
               + G +W                 T   A ++ + D +    +  +    +  +  +
Sbjct: 522 EEAEAAGDLWEKGPQLEETRGEMVITLTAPRAVELKMADGIVPDLDALKEKLGISAELRL 581

Query: 247 RKIK-DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
           + IK  W     +         +  ++      ++     G+ ++
Sbjct: 582 QPIKPSWVDSLVFVLNTTPMKVLLLMVALGALYLEAHFFTGILSI 626


>gi|225567906|ref|ZP_03776931.1| hypothetical protein CLOHYLEM_03979 [Clostridium hylemonae DSM
           15053]
 gi|225163194|gb|EEG75813.1| hypothetical protein CLOHYLEM_03979 [Clostridium hylemonae DSM
           15053]
          Length = 232

 Score = 57.7 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 37/239 (15%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73
           S +     +S  +  + I G+IE              + L+  +  +   +    +++ L
Sbjct: 19  SINLDENKSSHRIKLLTIIGEIEGHEAVSGNTKATKYEHLLPMLAEVEDSEEIEGMLILL 78

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           ++ GG   AG +I   I  +      +      +      +S   + IV + T ++  + 
Sbjct: 79  NTLGGDVEAGLSIAEMIASLSKPTVSLVLGGSHSIGGPLAVSAQYSFIVPSGTMIIHPVR 138

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
               +  V+  L  +  +   +     K        +    +   + V D          
Sbjct: 139 SSGMFIGVEQSLRNMLRTQDRITRFLSKHSNMSQERIEKLMLNPTELVKDV--------- 189

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
                           G +  G +A K GLID VGG  +    L+ +   +  +K K+ 
Sbjct: 190 ----------------GTLLEGEDAVKEGLIDEVGGMSQALHKLHEMIDGERQKKHKNM 232


>gi|219128394|ref|XP_002184399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404200|gb|EEC44148.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 216

 Score = 57.7 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 85  AIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                +Q+ +     +   V ++AAS GYL+SC ++ IVA+  +++GSIGV+   P V  
Sbjct: 53  LAAAQLQRFRDAGMQLTVAVEQVAASGGYLMSCVADRIVASPFAVLGSIGVISDIPNVYD 112

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            L K G+  ++V +   K   +P  +   +     +  V+     F   V ++R  P   
Sbjct: 113 RLKKEGIEFQTVTAGKYKRTLTPTKKATKEDFDKTKKDVEDILVLFKEFVHQNR--PQLD 170

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
              ++ G  W G +A    L D +   ++V 
Sbjct: 171 IDQVATGETWFGKDALDRKLCDEIKTVDDVI 201


>gi|114566793|ref|YP_753947.1| peptidase S14, ClpP [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337728|gb|ABI68576.1| ATP-dependent Clp protease proteolytic subunit ClpP [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 267

 Score = 57.7 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 57/192 (29%), Gaps = 25/192 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  +  +     L+V+L++ GG   AG A+   I  +      I      +  +
Sbjct: 94  EHIIPQLVAVEENPQIKGLLVALNTVGGDVEAGLALAEMIASLSKPTVSIVLGGGHSIGS 153

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +    + I  + T  +  I +      V    + L      V               
Sbjct: 154 TIAVCTNYSFIAPSATMTIHPIRLTGLVIGVPQTYEYLDKMQDRVV-------------- 199

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                        +      R +                G +  G +A   GLID VGG 
Sbjct: 200 ------RFVVEHSNISEEKFRELMFRMGDLARDI-----GTVLVGKDAVDCGLIDQVGGI 248

Query: 231 EEVWQSLYALGV 242
           ++    ++ L  
Sbjct: 249 KDALNKIHELKN 260


>gi|167758267|ref|ZP_02430394.1| hypothetical protein CLOSCI_00605 [Clostridium scindens ATCC 35704]
 gi|167664164|gb|EDS08294.1| hypothetical protein CLOSCI_00605 [Clostridium scindens ATCC 35704]
          Length = 241

 Score = 57.7 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 77/239 (32%), Gaps = 37/239 (15%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73
           S + +   +   +  + I G+IE              + L+  +  +   +    +++ L
Sbjct: 28  SINLNENKDRHRIKLLTIIGEIEGHEAVAGNTKATKYEHLLPMLAEVEDSEEIEGVLILL 87

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           ++ GG   AG +I   I  +      +      +      +S   + IV + T ++  + 
Sbjct: 88  NTMGGDVEAGLSIAEMIASLSKPTVSLVLGGSHSIGGPLAVSAKYSFIVPSGTMIIHPVR 147

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
               +  V+  L  +  +   +     +        +    +   + V D          
Sbjct: 148 SNGMFIGVEQSLRNMIRTQDRITRFLSQHSHMTQERIEELMLNPTELVKDV--------- 198

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
                           G +  G EA K GLID VGG  E    L+ +      +K ++ 
Sbjct: 199 ----------------GTLLEGEEAVKEGLIDEVGGMSEALNKLHEMIDQSRQKKYENM 241


>gi|221195242|ref|ZP_03568298.1| ATP-dependent Clp protease proteolytic subunit [Atopobium rimae
           ATCC 49626]
 gi|221185145|gb|EEE17536.1| ATP-dependent Clp protease proteolytic subunit [Atopobium rimae
           ATCC 49626]
          Length = 260

 Score = 57.7 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 69/221 (31%), Gaps = 52/221 (23%)

Query: 31  VEDNSPHVARIAIRGQIEDSQ-----------------ELIERIERISRDDSATALIVSL 73
           V  + P VA++ I G I D                   ++++ +  +S D     + V +
Sbjct: 11  VTQDEPDVAKLTIYGDITDGSFFVLLFDKEDPSTTGGLDIVKALSELSDD--VKTVEVHI 68

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           +S GG    G AI+ A++     + V+T     A S   +I  A +  +    SL+    
Sbjct: 69  NSYGGEVMQGVAIYNALR--DCGREVVTVCDGFACSIASVIFMAGSRRIMRPASLLMLHN 126

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
                      L K   ++ ++                                      
Sbjct: 127 PWVSARGNAQDLRKQADTLDTIA------------------------------ELSKTAY 156

Query: 194 SESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEV 233
               ++  +    + D   W +  +A + GL   V G +E 
Sbjct: 157 MTGTSLDRETLDAVMDAETWVSPEQALEWGLATEVSGSKEA 197


>gi|220931715|ref|YP_002508623.1| peptidase S14 ClpP [Halothermothrix orenii H 168]
 gi|219993025|gb|ACL69628.1| peptidase S14 ClpP [Halothermothrix orenii H 168]
          Length = 264

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 70/217 (32%), Gaps = 37/217 (17%)

Query: 41  IAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           I I GQIE              + +I ++  +  +     L+V L++ GG   AG AI  
Sbjct: 68  IPIVGQIEGHLVLPPKNKTTKYEHIIPQLVAVEENPKIKGLLVILNTVGGDIEAGLAISE 127

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
            I  +      +      +      +S   + IVA  +  +  I +      V    + L
Sbjct: 128 MINSMTKPTVSVVLGGGHSIGVPIAVSTDYSYIVATASMTIHPIRLTGMVIGVPQTYEYL 187

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
                               ++  + +  +          F +L+ +      +    + 
Sbjct: 188 D-------------------KMQDRVISFVTQHSRILPDHFRQLMFQ----TGELVRDV- 223

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
            G +  G EA   G+ID VGG  +    L  L   + 
Sbjct: 224 -GTVLVGEEAVNHGIIDEVGGLNKAVNKLRELINRRE 259


>gi|302874673|ref|YP_003843306.1| peptidase S49 [Clostridium cellulovorans 743B]
 gi|307690713|ref|ZP_07633159.1| peptidase S49 [Clostridium cellulovorans 743B]
 gi|302577530|gb|ADL51542.1| peptidase S49 [Clostridium cellulovorans 743B]
          Length = 274

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 71/241 (29%), Gaps = 37/241 (15%)

Query: 29  SHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSP 76
           S V      +A + I GQIE              + +I ++  I  +D     ++ L++ 
Sbjct: 23  SEVPGIEERIAILPIIGQIEGHMVAPPQHKTTKYEHIIPQVVGIETNDKIEGALIILNTI 82

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GG   AG AI   I  +      +      +       +   + I  + T +V  I +  
Sbjct: 83  GGDVEAGLAIAEMITSISKPTVSLVIGGGHSIGVPLATAAKYSYITTSATMIVHPIRMNG 142

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
               V    D      + +               +         ++  +      +    
Sbjct: 143 TVIGVPQTFDYFNKMQERIV--------EFVVRTSKVQRDSFISMMMKTDELLNDM---- 190

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
                        G I  G +A + GLID VGG +     L  L  +   +   +    +
Sbjct: 191 -------------GTILIGKQAVEKGLIDEVGGIKRALDKLEQLIEEVKKKNKANDKVKE 237

Query: 257 N 257
            
Sbjct: 238 E 238


>gi|225378146|ref|ZP_03755367.1| hypothetical protein ROSEINA2194_03806 [Roseburia inulinivorans DSM
           16841]
 gi|225209952|gb|EEG92306.1| hypothetical protein ROSEINA2194_03806 [Roseburia inulinivorans DSM
           16841]
          Length = 231

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 80/223 (35%), Gaps = 37/223 (16%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
            +E     ++ + I G+IE              + ++ ++  +  + +   L++ L++ G
Sbjct: 22  ELEHGEDRISMLTIIGEIEGHECLPAATKTTKYEHVLPKLAEVEENKNVDGLLLLLNTVG 81

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G   +G AI   +  +   KP ++ V   + S G  ++ +++      +  +    V   
Sbjct: 82  GDVESGLAIAEMVASI--DKPTVSLVLGGSHSIGVPLAVSTDYSFIVPSGTMVIHPVRMN 139

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
              +                         F ++  + ++ +     +  +    L+  + 
Sbjct: 140 GTVIGAQ-----------------PTYDYFKQMQDRILKFVVQHSKAEQNRLEELMM-NT 181

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
            I          G I  G +A + GLID +GG  E +  L+ L
Sbjct: 182 GILTKDL-----GTILVGGQAVEEGLIDSIGGIHEAFAKLHQL 219


>gi|220929125|ref|YP_002506034.1| peptidase S14 ClpP [Clostridium cellulolyticum H10]
 gi|219999453|gb|ACL76054.1| peptidase S14 ClpP [Clostridium cellulolyticum H10]
          Length = 254

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 72/227 (31%), Gaps = 33/227 (14%)

Query: 43  IRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           I G I           + +I ++  I        L++ L++ GG   AG AI   +  + 
Sbjct: 53  IEGHILLPPHNKTTKYEHIIPQLVAIEESKQIEGLLLVLNTVGGDVEAGLAISEMVSSL- 111

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
             KP ++ V     S G  ++ ++N    A ++ +    +      +             
Sbjct: 112 -SKPTVSLVLGGGHSIGVPMAVSANYSFIASSATMTIHPIRMNGLVIGVP---------- 160

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
                       F ++  + V  +          F  L+ +      +       G +  
Sbjct: 161 -------QTYEYFDKMQERVVNFVCSHSGIKKEKFRELMLK-TGELANDV-----GTVLF 207

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
           G EA + GLI+ VGG  +  + L  L      +  ++          
Sbjct: 208 GEEATQTGLINQVGGLSDAIKKLNELIEINRKKNAENPAQQPEGRLQ 254


>gi|303251830|ref|ZP_07338001.1| truncated periplasmic protease [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302649260|gb|EFL79445.1| truncated periplasmic protease [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 129

 Score = 57.3 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 48/129 (37%), Gaps = 8/129 (6%)

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
           +  + +   K   +   E   K  Q  Q  ++ ++  F + V+++R  P      ++ G 
Sbjct: 1   MDVMTAGEYKRTVTLVGENTEKGKQKFQQELEETHQLFKQFVAQNR--PQLDIEKIATGE 58

Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
            W G +A  + L+D +   +++  +          +++ +    +           +   
Sbjct: 59  HWFGKQALALDLVDEINTSDDLLLNAIK------EKEVIELKFKQKKNLTQRLGEQVELS 112

Query: 272 LEDTIPLMK 280
           +E+ I  + 
Sbjct: 113 VENVIAKLL 121


>gi|20806897|ref|NP_622068.1| membrane-bound serine protease (ClpP class) [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515371|gb|AAM23672.1| Membrane-bound serine protease (ClpP class) [Thermoanaerobacter
           tengcongensis MB4]
          Length = 441

 Score = 57.3 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 92/298 (30%), Gaps = 41/298 (13%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-SQELIERIERIS 61
           F ++KI    ++L  +    +    S         V  + + G I     + IE   + +
Sbjct: 2   FTMRKILLTTILLVFI----ILPPSSLQATSTQNPVYVLTVDGPIVPVVADYIESGFKAA 57

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
             D A+ +++ LS+PGG     + I   I        V                 A    
Sbjct: 58  ERDGASCIVIELSTPGGLYTTTQKIVTQILNSPIPVVVYVSP-------------AGAWA 104

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
            +A T +  S  +    P  +                         S ++    Q +   
Sbjct: 105 GSAGTFITLSANIAAMAPGSRIGAAHPVSIED-------------DSAMSEIQRQKITHD 151

Query: 182 VDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLID-VVGGQEEVWQSLYA 239
             +        ++E+R          + + R +T  EA    LID       ++ + +  
Sbjct: 152 AAAWIRS----IAENRGRDPKNAEMAVVESRSFTDTEALNANLIDLRANNLNDLLKKING 207

Query: 240 LGV---DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG-LWAVWNP 293
             V   D +   +K   P + Y    ++    +    +   L+    + G +  +++P
Sbjct: 208 KTVKNFDGTTITLKTDGPIRYYPMTSVQKFLFAISDPNIAYLLMSAGILGIILELYHP 265


>gi|238917241|ref|YP_002930758.1| ATP-dependent Clp protease, protease subunit [Eubacterium eligens
           ATCC 27750]
 gi|238872601|gb|ACR72311.1| ATP-dependent Clp protease, protease subunit [Eubacterium eligens
           ATCC 27750]
          Length = 236

 Score = 57.3 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 71/233 (30%), Gaps = 55/233 (23%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL------------IERIERISRDDSATALIVSLSSP 76
                    +  I I G+IE    L            + ++  I  D     ++  +++ 
Sbjct: 34  KDGAVTKNALQVITIIGEIEGHDNLPATSKATKYEHMLPKLAEIEMDKDIKGVLFIMNTV 93

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GG   AG A+   I  +  +KP ++ +   + S G  ++ +++      T+ +    V  
Sbjct: 94  GGDVSAGLALAEMIASM--KKPTVSLIIGDSHSIGVPLAVSTDYSFIVPTATMIIHPVRM 151

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                                                 VQ   D  +         ++  
Sbjct: 152 NG--------------------------------TLIGVQQTYDYFERISDRITSFIATH 179

Query: 197 RNIPYDKTLVLSD---------GRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
            N+  ++   +           G +  G +A + GLI  VGG  +    L +L
Sbjct: 180 SNVSKERVEKMMVDTTQLSKDLGTVLVGRQAVEEGLICEVGGISDALAKLDSL 232


>gi|99034762|ref|ZP_01314688.1| hypothetical protein Wendoof_01000499 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 199

 Score = 57.3 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 13/155 (8%)

Query: 30  HVEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSP 76
             E+N   +A I + G              +   +++ E IE+   D+    +I+ + SP
Sbjct: 31  TAENNVEKIAIIPVHGILTKKPGAFDDMLGMTSYEKIREEIEKALIDEEVETIILDIDSP 90

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GG       +   I + +  K ++   ++ A SA Y I+ ++  ++   TS VGSIGV+ 
Sbjct: 91  GGEVNGLFDLSDFIYEARGLKKIVAIANDDAYSAAYAIASSAEKVLVTRTSGVGSIGVIA 150

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
            +     F +K G+   +V +   K + +P   + 
Sbjct: 151 SHIDQSGFDEKQGIKYTTVFAGKRKNDLNPHEPIT 185


>gi|225572062|ref|ZP_03780926.1| hypothetical protein RUMHYD_00356 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040497|gb|EEG50743.1| hypothetical protein RUMHYD_00356 [Blautia hydrogenotrophica DSM
           10507]
          Length = 248

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 74/237 (31%), Gaps = 37/237 (15%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
                   +  + I G++E              + ++ ++  I  D +   L+V L++ G
Sbjct: 29  EENSGKHRIHLLTIIGEVEGHESAPNHSKTTKYEHVLPKLAMIEDDQNVDGLLVLLNTVG 88

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G   AG AI   I  +      +      +      +S   + +V + T ++  +     
Sbjct: 89  GDVEAGLAIAEMIASLSVPTVSLVLGGGHSIGVPMAVSADYSFVVPSATMVIHPVRSNGM 148

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +  V      +      + S            +    +   Q V D              
Sbjct: 149 FIGVAQTYRNMEKIQDRITSFIAGHSHITQQRLEELMLDTSQLVKDV------------- 195

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
                       G +  G +A + GLID VGG +E    L+ +  +   +K  + N 
Sbjct: 196 ------------GTMLEGEDAVREGLIDEVGGIKEALAKLHQMIGENGQKKTVERNK 240


>gi|83589919|ref|YP_429928.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moorella
           thermoacetica ATCC 39073]
 gi|83572833|gb|ABC19385.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moorella
           thermoacetica ATCC 39073]
          Length = 259

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 68/190 (35%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  + +D S   L+V L++ GG   AG AI   +  V   KPV++ V     S 
Sbjct: 83  EHIIPQLVAVEQDPSIKGLLVVLNTVGGDVEAGLAIAEML--VSMSKPVVSLVLGGGHSI 140

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  IS A+N    AET+ +    +      +        +                    
Sbjct: 141 GVPISVAANYSFIAETATMTIHPIRLTGLVIGVPQTYEYL-------------------- 180

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                   + +     H  +      R +     L    G I  G +A +VGLID VGG 
Sbjct: 181 ---DKMQDRVIRFIVEHANISEQELRRLMFQTGELARDIGTILVGQDAVRVGLIDEVGGL 237

Query: 231 EEVWQSLYAL 240
               + +  L
Sbjct: 238 ASAVRKVKEL 247


>gi|153853239|ref|ZP_01994648.1| hypothetical protein DORLON_00633 [Dorea longicatena DSM 13814]
 gi|149754025|gb|EDM63956.1| hypothetical protein DORLON_00633 [Dorea longicatena DSM 13814]
          Length = 250

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 78/235 (33%), Gaps = 37/235 (15%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73
           S +     ++  +  + I G+IE              + L+  +  +        L++ L
Sbjct: 37  SANLEGSRDNHRIKLLTIVGEIEGHEAVSGNTKATKYEHLLPMLAEVEDSSKIDGLLILL 96

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           ++ GG   AG +I   I  +      +      +      +S   + IV + T ++  + 
Sbjct: 97  NTLGGDVEAGLSIAEMIASLSKPTVSLVLGGSHSIGGPLAVSADYSFIVPSGTMVIHPVR 156

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
               +  V+  LD +  +   +                          +          +
Sbjct: 157 SNGMFIGVQQSLDNMIRTQDRIT-----------------------RFLSEHSSMKQERI 193

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            E    P +    +  G +  G +A + GLID VGG  +    L+ +  D++ +K
Sbjct: 194 EELMLNPTELVKDV--GTLLEGKDAVREGLIDAVGGLSDALNKLHEMISDRNQKK 246


>gi|255655334|ref|ZP_05400743.1| translocation-enhancing protein TepA [Clostridium difficile
           QCD-23m63]
          Length = 244

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 66/236 (27%), Gaps = 37/236 (15%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVS 72
           F  +         +  I I G+IE              + +I  +  I   +    ++V 
Sbjct: 31  FGTNEMPPQPPKDIQCITIIGEIEGHFIGNPQKKATKYEHIIPMLYSIEESNDVKGVLVV 90

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           L++ GG   AG AI   +     +   +      +       +   + I    T ++  +
Sbjct: 91  LNTVGGDIEAGLAIAELLNSTSKKVVTLVLGGSHSIGVPLATAGDYSFIAPTATMIIHPV 150

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                   +    +        +                                   + 
Sbjct: 151 RTTGLVIGINETFEYFKKMQDRIIQ------------------------FIIRTSNIKKD 186

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           V E      D+ +    G +  G EA   GLID VGG +E  + L  L  +    K
Sbjct: 187 VLEKLMHEKDELVS-DVGSVLIGKEAVDYGLIDEVGGLKEALKKLRELIKESEEEK 241


>gi|153871745|ref|ZP_02000839.1| Peptidase S49 [Beggiatoa sp. PS]
 gi|152071790|gb|EDN69162.1| Peptidase S49 [Beggiatoa sp. PS]
          Length = 163

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/119 (10%), Positives = 43/119 (36%), Gaps = 18/119 (15%)

Query: 6   KKIKTRYVMLSLVTLTVV-----------YFSWSSHVEDNSPHVARIAIRGQIED----- 49
           +K +  +++L  + + ++           +   +        H A I ++G I       
Sbjct: 37  RKWRVFFMLLFFIYIFLIYATILEPDWHRFIGENDETASADTHTALIEVQGIIASETEAS 96

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
           + +++  + +  +D+    +I+ ++SP       + +   ++     K  +     +  
Sbjct: 97  ADQIVSGLRKAFKDNKTKGVILRINSP--GVVQCKLVISMMKFDVCGKNTLKSQSMLWQ 153


>gi|167766697|ref|ZP_02438750.1| hypothetical protein CLOSS21_01203 [Clostridium sp. SS2/1]
 gi|317497526|ref|ZP_07955845.1| Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711634|gb|EDS22213.1| hypothetical protein CLOSS21_01203 [Clostridium sp. SS2/1]
 gi|291558361|emb|CBL37161.1| Protease subunit of ATP-dependent Clp proteases [butyrate-producing
           bacterium SSC/2]
 gi|316895209|gb|EFV17372.1| Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 216

 Score = 56.5 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 71/233 (30%), Gaps = 37/233 (15%)

Query: 27  WSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLS 74
                +     +  + I G+IE              + +I  + ++ +D+S   +++ ++
Sbjct: 9   IEKFGQLQENGIFTMTIIGEIEGHQLSAQNAKTTKYEHMIPALAKVEQDESIKGILILIN 68

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           + GG    G AI   I  +      +      +      ++   + IV + T ++  +  
Sbjct: 69  TIGGDVECGLAIAELIASLSKPTVSLVLGGSHSIGVPLAVAADHSFIVKSATMMIHPVRS 128

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
              +  V      +      +                          +          V 
Sbjct: 129 SGTFIGVIQSYRNIEKIQDRI-----------------------TTFISDHCKMKKERVE 165

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           E       +   +  G I +G EA K GLID +GG +E    L  +      +
Sbjct: 166 ELMLHIGQQVKDV--GMILSGEEAVKEGLIDEMGGIKEATDRLIEIINQSENK 216


>gi|213585527|ref|ZP_03367353.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi
          str. E98-0664]
          Length = 81

 Score = 56.5 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 9/62 (14%)

Query: 34 NSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGE 84
              +A I   G I D +E            +I     D    A+++ ++SPGGS  A E
Sbjct: 1  TGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGSVNASE 60

Query: 85 AI 86
           I
Sbjct: 61 VI 62


>gi|168187899|ref|ZP_02622534.1| Clp protease [Clostridium botulinum C str. Eklund]
 gi|169294242|gb|EDS76375.1| Clp protease [Clostridium botulinum C str. Eklund]
          Length = 232

 Score = 56.5 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 70/221 (31%), Gaps = 39/221 (17%)

Query: 40  RIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
            + I GQIE              + LI ++  I  +D+   +++ L++ GG   AG AI 
Sbjct: 37  VLPIIGQIEGHSVLPPQSKATKYEHLIPQLVDIETNDAIEGVLIILNTVGGDVEAGLAIA 96

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             I  +      +      +       S   + I  + T ++  I +      V    + 
Sbjct: 97  EMINSLSKPSVSLVIGGGHSIGVPLATSADYSFISPSATMIIHPIRMNGLVLGVPQTFEY 156

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
                + +                          +D             R++      +L
Sbjct: 157 FNKMQERI--------------------------IDFITRTSKMKNETFRSLMLQTDELL 190

Query: 208 SD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           +D G I  G +A   GLID VGG       L  +  ++  +
Sbjct: 191 NDMGTILIGKQAVDYGLIDEVGGLSSAINKLEDIIDNRDKK 231


>gi|302404698|ref|XP_003000186.1| ATP-dependent Clp protease proteolytic subunit [Verticillium
           albo-atrum VaMs.102]
 gi|261360843|gb|EEY23271.1| ATP-dependent Clp protease proteolytic subunit [Verticillium
           albo-atrum VaMs.102]
          Length = 238

 Score = 56.5 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 28/196 (14%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D  S  ++ ++  +  D+   A+ + ++SPGGS  +G AI+  +  +K+  
Sbjct: 51  IICLNGAIDDTVSASIVAQLLWLESDNPDKAITLYINSPGGSVTSGLAIYDTMTYIKSPV 110

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L    +    A   S V     L      +     + +    ++ 
Sbjct: 111 STVCLGAASSMGALLLTGGEAGKRYALPHSSVMIHQPLG---GTQGQASDILIYAHQIQR 167

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN-IPYDKTLVLSD-GRIWTG 215
              K        +N                      +  R+     +   + +  +  T 
Sbjct: 168 VRTKLNEIMRRHLNA---------------------AFGRDRYSLAEVNDMMERDKYLTP 206

Query: 216 AEAKKVGLIDVVGGQE 231
            EAK++G+ID +  + 
Sbjct: 207 EEAKEMGVIDEILTRR 222


>gi|325578441|ref|ZP_08148576.1| protease SohB [Haemophilus parainfluenzae ATCC 33392]
 gi|325160177|gb|EGC72306.1| protease SohB [Haemophilus parainfluenzae ATCC 33392]
          Length = 128

 Score = 56.5 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
            + +   K   +   E   K  Q  Q  ++ ++  F + V+++R  P+     ++ G  W
Sbjct: 1   MITAGEFKRTVTVLGENTEKGKQKFQAELEETHQLFKQFVAQNR--PHLDVDKVATGEHW 58

Query: 214 TGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256
            G +A  + L+D +   +++  + +    V     K+K     K
Sbjct: 59  FGQQALALQLVDELATSDDIILEKMKDKSVIAVKYKVKKPLLQK 102


>gi|317052268|ref|YP_004113384.1| hypothetical protein Selin_2108 [Desulfurispirillum indicum S5]
 gi|316947352|gb|ADU66828.1| protein of unknown function DUF107 [Desulfurispirillum indicum S5]
          Length = 462

 Score = 56.5 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 74/225 (32%), Gaps = 18/225 (8%)

Query: 7   KIKTRYVMLSLVTLTVVYFS-WSSHVEDNSPHVARIAIRGQIEDSQ-ELIERIERISRDD 64
                + ++    L +  FS  ++  E +SP +  I + G I  +  + ++R  + + D+
Sbjct: 4   YRLFFFSLILFAGLGLGLFSQLAAQPEASSPRIVVIDLEGPIGPAVGDFVKRSLQKAADE 63

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
              A ++ +++PGG   +   I +AI               + +    +   A     AA
Sbjct: 64  QVDAAVLRMNTPGGLDSSMRDIIQAI---------------LDSPLPVISYVAPTGARAA 108

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
                               L        S       A           +   M   + +
Sbjct: 109 SAGTYILYASHVAAMAPSTNLGAATPVQISGGGPLGGAGDDDKEGEKAASEDAMGRKIVN 168

Query: 185 SYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVG 228
               ++R ++E      +     + +G   T +EA +  +ID++ 
Sbjct: 169 DAVAYIRGLAELHGRNAEWAEESVREGASLTSSEALEKNVIDIIA 213


>gi|294851554|ref|ZP_06792227.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026]
 gi|294820143|gb|EFG37142.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026]
          Length = 116

 Score = 56.2 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 34/54 (62%)

Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSP 76
            F      + N PH+A++ I G I +++EL++R+++I+ DD+   +I+ L SP
Sbjct: 40 FAFYSLRSAKFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLLDSP 93


>gi|238484703|ref|XP_002373590.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aspergillus
           flavus NRRL3357]
 gi|317140707|ref|XP_001818368.2| ATP-dependent Clp protease proteolytic subunit [Aspergillus oryzae
           RIB40]
 gi|220701640|gb|EED57978.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aspergillus
           flavus NRRL3357]
          Length = 256

 Score = 56.2 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 64/212 (30%), Gaps = 31/212 (14%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++++  S  ++ ++  +  D+    + + ++SPGGS  AG AI+  +  + +  
Sbjct: 71  IICLNGEVDETMSASIVAQLLFLEADNPQKPIHLYINSPGGSVTAGLAIYDTMTYIASPV 130

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L             S +        Y      +      I  V+ 
Sbjct: 131 STICVGQAASMGSLLLCGGHPGKRYCLPHSSIMIHQPSGGYFGQATDIAIHAKEILRVRE 190

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
              K      +                                 D+   L +   + G  
Sbjct: 191 QLNKIYKRHLTGKKEL--------------------------SLDEIEKLMERDYFMGAQ 224

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           EA ++G++D +   +   +S    G       
Sbjct: 225 EALEMGIVDEI--LDRRVRSKEERGEGDEKPP 254


>gi|83766223|dbj|BAE56366.1| unnamed protein product [Aspergillus oryzae]
          Length = 267

 Score = 56.2 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 64/212 (30%), Gaps = 31/212 (14%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++++  S  ++ ++  +  D+    + + ++SPGGS  AG AI+  +  + +  
Sbjct: 82  IICLNGEVDETMSASIVAQLLFLEADNPQKPIHLYINSPGGSVTAGLAIYDTMTYIASPV 141

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L             S +        Y      +      I  V+ 
Sbjct: 142 STICVGQAASMGSLLLCGGHPGKRYCLPHSSIMIHQPSGGYFGQATDIAIHAKEILRVRE 201

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
              K      +                                 D+   L +   + G  
Sbjct: 202 QLNKIYKRHLTGKKEL--------------------------SLDEIEKLMERDYFMGAQ 235

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           EA ++G++D +   +   +S    G       
Sbjct: 236 EALEMGIVDEI--LDRRVRSKEERGEGDEKPP 265


>gi|296451320|ref|ZP_06893060.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP08]
 gi|296880328|ref|ZP_06904291.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP07]
 gi|296259926|gb|EFH06781.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP08]
 gi|296428569|gb|EFH14453.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP07]
          Length = 252

 Score = 56.2 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 66/236 (27%), Gaps = 37/236 (15%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVS 72
           F  +         +  I I G+IE              + +I  +  I   +    ++V 
Sbjct: 39  FGTNEMPPQPPKDIQCITIIGEIEGHFIGNPQKKATKYEHIIPMLYSIEESNDVKGVLVV 98

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           L++ GG   AG AI   +     +   +      +       +   + I    T ++  +
Sbjct: 99  LNTVGGDIEAGLAIAELLNSTSKKVVTLVLGGSHSIGVPLATAGDYSFIAPTATMIIHPV 158

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                   +    +        +                                   + 
Sbjct: 159 RTTGLVIGINETFEYFKKMQDRIIQ------------------------FIIRTSNIKKD 194

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           V E      D+ +    G +  G EA   GLID VGG +E  + L  L  +    K
Sbjct: 195 VLEKLMHEKDELVS-DVGSVLIGKEAVDYGLIDEVGGLKEALKKLRELIKESEEEK 249


>gi|126698922|ref|YP_001087819.1| translocation-enhancing protein TepA [Clostridium difficile 630]
 gi|254974868|ref|ZP_05271340.1| translocation-enhancing protein TepA [Clostridium difficile
           QCD-66c26]
 gi|255092255|ref|ZP_05321733.1| translocation-enhancing protein TepA [Clostridium difficile CIP
           107932]
 gi|255100344|ref|ZP_05329321.1| translocation-enhancing protein TepA [Clostridium difficile
           QCD-63q42]
 gi|255306281|ref|ZP_05350452.1| translocation-enhancing protein TepA [Clostridium difficile ATCC
           43255]
 gi|255313995|ref|ZP_05355578.1| translocation-enhancing protein TepA [Clostridium difficile
           QCD-76w55]
 gi|255516675|ref|ZP_05384351.1| translocation-enhancing protein TepA [Clostridium difficile
           QCD-97b34]
 gi|255649774|ref|ZP_05396676.1| translocation-enhancing protein TepA [Clostridium difficile
           QCD-37x79]
 gi|260682931|ref|YP_003214216.1| translocation-enhancing protein TepA [Clostridium difficile CD196]
 gi|260686529|ref|YP_003217662.1| translocation-enhancing protein TepA [Clostridium difficile R20291]
 gi|306519879|ref|ZP_07406226.1| translocation-enhancing protein TepA [Clostridium difficile
           QCD-32g58]
 gi|115250359|emb|CAJ68181.1| Protein export-enhancing factor [Clostridium difficile]
 gi|260209094|emb|CBA62253.1| translocation-enhancing protein TepA [Clostridium difficile CD196]
 gi|260212545|emb|CBE03509.1| translocation-enhancing protein TepA [Clostridium difficile R20291]
          Length = 244

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 66/236 (27%), Gaps = 37/236 (15%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVS 72
           F  +         +  I I G+IE              + +I  +  I   +    ++V 
Sbjct: 31  FGTNEMPPQPPKDIQCITIIGEIEGHFIGNPQKKATKYEHIIPMLYSIEESNDVKGVLVV 90

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           L++ GG   AG AI   +     +   +      +       +   + I    T ++  +
Sbjct: 91  LNTVGGDIEAGLAIAELLNSTSKKVVTLVLGGSHSIGVPLATAGDYSFIAPTATMIIHPV 150

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                   +    +        +                                   + 
Sbjct: 151 RTTGLVIGINETFEYFKKMQDRIIQ------------------------FIIRTSNIKKD 186

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           V E      D+ +    G +  G EA   GLID VGG +E  + L  L  +    K
Sbjct: 187 VLEKLMHEKDELVS-DVGSVLIGKEAVDYGLIDEVGGLKEALKKLRELIKESEEEK 241


>gi|331269619|ref|YP_004396111.1| peptidase S14, ClpP [Clostridium botulinum BKT015925]
 gi|329126169|gb|AEB76114.1| peptidase S14, ClpP [Clostridium botulinum BKT015925]
          Length = 231

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 68/221 (30%), Gaps = 39/221 (17%)

Query: 40  RIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
            + I GQIE              + +I ++  I  +D    +++ L++ GG   AG AI 
Sbjct: 35  VLPIIGQIEGHSVLPPQSKATKYEHVIPQLVDIEMNDDIEGVLIILNTVGGDVEAGLAIA 94

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             I  +      +      +           + I  + T +V  I +      V    + 
Sbjct: 95  EMISSLSKPSVSLVIGGGHSIGVPLATCADYSFISPSATMIVHPIRMNGLVLGVPQTFEY 154

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
                + +     +        +                          R++      +L
Sbjct: 155 FNKMQERIIDFIKRTSKINKDTL--------------------------RSLMLQTDELL 188

Query: 208 SD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           +D G I  G +A   GLID VGG       L  +   +S +
Sbjct: 189 NDMGTILIGKQAVDYGLIDEVGGLSSAINKLEEIIDSKSKK 229


>gi|145233903|ref|XP_001400324.1| ATP-dependent Clp protease proteolytic subunit [Aspergillus niger
           CBS 513.88]
 gi|134057262|emb|CAK96425.1| unnamed protein product [Aspergillus niger]
          Length = 251

 Score = 55.8 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 62/197 (31%), Gaps = 29/197 (14%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++++  S  ++ ++  +  D+    + + ++SPGGS  AG AI+  +  + +  
Sbjct: 71  IICLNGEVDETMSASIVAQLLFLEADNPQKPIHLYINSPGGSVTAGLAIYDTMTYIASPV 130

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L             S +        Y      +      I  V+S
Sbjct: 131 STICVGQAASMGSLLLCGGHPGKRFCLPHSSIMMHQPSGGYFGQASDIAIHAKEILRVRS 190

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
              K      +                              +  D+   L +   + G  
Sbjct: 191 QLNKIYKRHLTGKKE--------------------------MTLDEIEKLMERDYFMGAK 224

Query: 217 EAKKVGLIDVVGGQEEV 233
           EA  +G++D +  +   
Sbjct: 225 EALDMGIVDEILDRRAA 241


>gi|297617218|ref|YP_003702377.1| peptidase S14 ClpP [Syntrophothermus lipocalidus DSM 12680]
 gi|297145055|gb|ADI01812.1| peptidase S14 ClpP [Syntrophothermus lipocalidus DSM 12680]
          Length = 236

 Score = 55.8 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 57/196 (29%), Gaps = 25/196 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  +  +     L+V L++ GG   AG A+   I  +      I      +   
Sbjct: 64  EHVIPQLVAVEENPDIRGLLVILNTVGGDVEAGLALAEMIASMSKPSVSIVLGGGHSIGV 123

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +S + + I    T  +  I +      V    + L      V               
Sbjct: 124 TLAVSTSYSFIAHTATMTIHPIRLTGLVIGVPQTYEYLDKMQDRVVR------------- 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                               R +                G +  G +A  +GLID VGG 
Sbjct: 171 -------FVTEHSKVSESQFRELMFRTGELARDI-----GTVLVGKDAVDIGLIDEVGGI 218

Query: 231 EEVWQSLYALGVDQSI 246
           +E    L  L   + I
Sbjct: 219 KEALAKLRGLINHKGI 234


>gi|219669156|ref|YP_002459591.1| peptidase S14 ClpP [Desulfitobacterium hafniense DCB-2]
 gi|219539416|gb|ACL21155.1| peptidase S14 ClpP [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score = 55.8 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 70/229 (30%), Gaps = 37/229 (16%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
            + + S  +  + + GQIE              + +I ++  + ++     +++ L++ G
Sbjct: 26  RIPEPSESIYCLTVVGQIEGHQVLSAQTKATKYEHVIPQLFAVEQNPKVEGILLILNTAG 85

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G   AG AI   +  +      I      +      +SC  + I    T  +  I     
Sbjct: 86  GDVEAGLAISELVSSLSKPSVSIVLGGGHSIGIPIAVSCDRSFIAPTGTMTLHPIRYTGL 145

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
                   D L    + + S                                ++ +  + 
Sbjct: 146 VINGHQQFDYLQKMQERINS--------------------FIIQHSQITEEQLKKLMFAT 185

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
                       G I  G +A  +GLID VGG +E +  L  L   +  
Sbjct: 186 GELAQDI-----GTILIGQDAVDIGLIDAVGGLKEAYGELKRLIGSKRE 229


>gi|118361832|ref|XP_001014144.1| hypothetical protein TTHERM_00406670 [Tetrahymena thermophila]
 gi|89295911|gb|EAR93899.1| hypothetical protein TTHERM_00406670 [Tetrahymena thermophila
           SB210]
          Length = 279

 Score = 55.8 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 81/219 (36%), Gaps = 14/219 (6%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
             E +   VA   I  +I           + + ++  +A A+ + +S+   S      I 
Sbjct: 16  SREISKQAVAVCRIH-RINAQTTFNVQRVLNKAAKHKNA-AVALVISADSSSYAQAYNII 73

Query: 88  RAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           + IQ  +   + PV T   E   S GYLI CA        TSLVG++GV + +  ++  +
Sbjct: 74  KQIQIFQKNTKIPVYTFGEEQVFSGGYLILCAGQKSFVDNTSLVGNLGVNYTHTNIEKLV 133

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204
            K      +   +   A       ++ +     +     + H   +++     +   K  
Sbjct: 134 TKTLDFTINDFHTSDIAFSHRADSLSKQKEDNEEFFRQFNSHLQDQVIQTFEGLRKPKVK 193

Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
                    L  G I+ G +A + GL+D +G    V   
Sbjct: 194 MQPELYQNDLLQGEIYNGKKAVEYGLVDEIGTYYSVINK 232


>gi|325661480|ref|ZP_08150105.1| hypothetical protein HMPREF0490_00839 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472196|gb|EGC75409.1| hypothetical protein HMPREF0490_00839 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 232

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 69/223 (30%), Gaps = 37/223 (16%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
             +     +  + I G+IE              + L+ ++  I  ++    +++ L++ G
Sbjct: 29  DKDREKHRIQLLTIIGEIEGHEAVSGNTKATKYEHLLPKLAEIEDNEEIDGVLILLNTMG 88

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G   AG AI   I  +      +      +      +S   + IV + T +V  +     
Sbjct: 89  GDVEAGLAIAEMIASLSKPTVSLVLGGSHSIGGPLAVSADYSFIVPSGTMIVHPVRSTGM 148

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +  V      +  +   +                          +          V E  
Sbjct: 149 FIGVLQSYKNMERTQDRIT-----------------------RFLAEHSRISQERVEELM 185

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                    +  G +  G +A + GLID VGG  +  + L A+
Sbjct: 186 LDSTQLVKDV--GTLLEGEDAVREGLIDAVGGISDALKKLQAM 226


>gi|331084957|ref|ZP_08334044.1| hypothetical protein HMPREF0987_00347 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408657|gb|EGG88122.1| hypothetical protein HMPREF0987_00347 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 229

 Score = 55.4 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 69/223 (30%), Gaps = 37/223 (16%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
             +     +  + I G+IE              + L+ ++  I  ++    +++ L++ G
Sbjct: 26  DKDREKHRIQLLTIIGEIEGHEAVSGNTKATKYEHLLPKLAEIEDNEEIDGVLILLNTMG 85

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G   AG AI   I  +      +      +      +S   + IV + T +V  +     
Sbjct: 86  GDVEAGLAIAEMIASLSKPTVSLVLGGSHSIGGPLAVSADYSFIVPSGTMIVHPVRSTGM 145

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +  V      +  +   +                          +          V E  
Sbjct: 146 FIGVLQSYKNMERTQDRIT-----------------------RFLAEHSRISQDRVEELM 182

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                    +  G +  G +A + GLID VGG  +  + L A+
Sbjct: 183 LDSTQLVKDV--GTLLEGEDAVREGLIDAVGGISDALKKLQAM 223


>gi|317121875|ref|YP_004101878.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter marianensis DSM 12885]
 gi|315591855|gb|ADU51151.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter marianensis DSM 12885]
          Length = 347

 Score = 55.4 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 77/227 (33%), Gaps = 37/227 (16%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73
             +  V  + P +  + I GQ+E              + +I ++  + ++ +   L+V L
Sbjct: 57  MGTDRVPQSPPDIHVLTIVGQVEGHLQLPAQNKTTKYEHIIPQLVAVEQNPAIKGLLVIL 116

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           ++ GG   AG A+   I+ +   K  I      +      ++   + I    T  +  I 
Sbjct: 117 NTVGGDVEAGLALAELIRSLSKPKVSIVLGGGHSIGVPIAVAADISFIAPTATMTIHPIR 176

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           +      V    + L    + +             E +  +    ++++  +      + 
Sbjct: 177 LTGLVIGVPQSYEYLDKMQERI--------IRFVVENSRISRDRFRELMFRTGELARDI- 227

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                           G +  G +A + GLID VGG  +  Q L  L
Sbjct: 228 ----------------GTVLVGEDAVREGLIDEVGGLAQAVQRLNQL 258


>gi|313901853|ref|ZP_07835274.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467896|gb|EFR63389.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter subterraneus DSM 13965]
          Length = 324

 Score = 55.4 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 77/227 (33%), Gaps = 37/227 (16%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73
             +  V  + P +  + I GQ+E              + +I ++  + ++ +   L+V L
Sbjct: 58  MGTDRVPQSPPDIHVLTIVGQVEGHLQLPAQNKTTKYEHIIPQLVAVEQNPAIKGLLVIL 117

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           ++ GG   AG A+   I+ +   K  I      +      ++   + I    T  +  I 
Sbjct: 118 NTVGGDVEAGLALAELIRSLSKPKVSIVLGGGHSIGVPIAVAADVSFIAPTATMTIHPIR 177

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           +      V    + L    + +             E +  +    ++++  +      + 
Sbjct: 178 LTGLVIGVPQSYEYLDKMQERI--------IRFVVENSRISRDRFRELMFRTGELARDI- 228

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                           G +  G +A + GLID VGG  +  Q L  L
Sbjct: 229 ----------------GTVLVGEDAVREGLIDEVGGLAQAVQRLNQL 259


>gi|296132914|ref|YP_003640161.1| peptidase S49 [Thermincola sp. JR]
 gi|296031492|gb|ADG82260.1| peptidase S49 [Thermincola potens JR]
          Length = 270

 Score = 55.4 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 67/192 (34%), Gaps = 29/192 (15%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  +  +     ++V L++ GG   AG AI   I      KP ++ V     S 
Sbjct: 93  EHIIPQLVALEENPEIEGVLVVLNTIGGDVEAGLAIAEMI--TSMSKPTVSLVLGGGHSI 150

Query: 111 GYLISCASNIIVAAETSLVGSIGVL--FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
           G  I+ A++    AET+ +    +        V    + L      V +  +K      +
Sbjct: 151 GVPIAVATDYSFIAETAGMTVHPIRLTGLVIGVPQTYEYLDKMQDRVVNFIIKHSKISEA 210

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
           ++     +  +   D                          G +  G +A  VGLID VG
Sbjct: 211 KLRELMFRTGELARDI-------------------------GAVLIGKDAVDVGLIDEVG 245

Query: 229 GQEEVWQSLYAL 240
           G  +    L  L
Sbjct: 246 GVSQAMNKLREL 257


>gi|160934088|ref|ZP_02081475.1| hypothetical protein CLOLEP_02951 [Clostridium leptum DSM 753]
 gi|156866761|gb|EDO60133.1| hypothetical protein CLOLEP_02951 [Clostridium leptum DSM 753]
          Length = 291

 Score = 55.4 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 67/198 (33%), Gaps = 25/198 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + ++ ++  I  +     L+V L++ GG   AG AI   +     +KP ++ V     S 
Sbjct: 86  EHVLPQLVAIEEEPRIDGLLVLLNTVGGDVEAGLAIAELLA--GMKKPTVSMVLGGGHSI 143

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  ++ A+     A+++ +    V      +                            +
Sbjct: 144 GVPLAVAAKKSFIAKSASMTIHPVRMSGLVL-----------------------GVPQTL 180

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                   +     + +  +            + LV+  G +  G +A K GLID +G  
Sbjct: 181 EYFQRMQDRITSFVAENSNITPERFYELSMNTEELVMDVGTVLDGEDAVKEGLIDRLGNL 240

Query: 231 EEVWQSLYALGVDQSIRK 248
            +  Q LY +  +    K
Sbjct: 241 SDALQCLYDMIDEYRASK 258


>gi|212639505|ref|YP_002316025.1| protease subunit of ATP-dependent Clp protease [Anoxybacillus
           flavithermus WK1]
 gi|212560985|gb|ACJ34040.1| Protease subunit of ATP-dependent Clp protease [Anoxybacillus
           flavithermus WK1]
          Length = 237

 Score = 55.4 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 64/206 (31%), Gaps = 33/206 (16%)

Query: 43  IRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           I G I           + LI +I  I ++ +   L+V L++ GG   AG AI   +  + 
Sbjct: 45  IEGHIQLPPQNKTTKYEHLIPQIVAIEQNPNIEGLLVVLNTVGGDVEAGLAIAEMLASMS 104

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
                I      +      +SC  + I    T  +  I +      V    + L    + 
Sbjct: 105 KPTVSIVLGGGHSIGVPIAVSCDYSFIAETATMTIHPIRLTGLVIGVPQTFEYLDKMQER 164

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
           V +  +K       ++            D                          G    
Sbjct: 165 VVNFVVKHSNISEEKLKELMFSKGNLTRDI-------------------------GTNVV 199

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYAL 240
           G +A K GLID VGG  +  + L  L
Sbjct: 200 GTDAVKYGLIDEVGGLSQAMRKLREL 225


>gi|311030070|ref|ZP_07708160.1| protein export-enhancing factor [Bacillus sp. m3-13]
          Length = 252

 Score = 55.0 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 66/201 (32%), Gaps = 25/201 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++ +   L+V L++ GG   AG AI   +  +      +      +   
Sbjct: 72  EHVIPQIVAIEQNPNIEGLLVILNTVGGDVEAGLAISEMLASLSKPTVSLVLGGGHSIGV 131

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +SC  + I    T  +  + +      V    + L      V +   K    P  + 
Sbjct: 132 PIAVSCDYSFIAETATMTIHPVRLTGLVIGVPQTFEYLDKMQDRVINFVTKNSGIPEEKF 191

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
               +       D                          G    GA+A + GLID VGG 
Sbjct: 192 KELMLSKGNLTRDI-------------------------GTNVVGADAVEYGLIDQVGGV 226

Query: 231 EEVWQSLYALGVDQSIRKIKD 251
            E  + L  +   ++  K ++
Sbjct: 227 GEAIRKLNEMVEAKNPNKTQE 247


>gi|89894720|ref|YP_518207.1| hypothetical protein DSY1974 [Desulfitobacterium hafniense Y51]
 gi|89334168|dbj|BAE83763.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 209

 Score = 55.0 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 70/229 (30%), Gaps = 37/229 (16%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
            + + S  +  + + GQIE              + +I ++  + ++     +++ L++ G
Sbjct: 5   RIPEPSESIYCLTVVGQIEGHQVLSAQTKATKYEHVIPQLFAVEQNPKVEGILLILNTAG 64

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G   AG AI   +  +      I      +      +SC  + I    T  +  I     
Sbjct: 65  GDVEAGLAISELVSSLSKPSVSIVLGGGHSIGIPIAVSCDRSFIAPTGTMTLHPIRYTGL 124

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
                   D L    + + S                                ++ +  + 
Sbjct: 125 VINGHQQFDYLQKMQERINS--------------------FIIQHSRITEEQLKKLMFAT 164

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
                       G I  G +A  +GLID VGG +E +  L  L   +  
Sbjct: 165 GELAQDI-----GTILIGQDAVDIGLIDAVGGLKEAYGELKRLIGSKRE 208


>gi|251797382|ref|YP_003012113.1| peptidase S14 ClpP [Paenibacillus sp. JDR-2]
 gi|247545008|gb|ACT02027.1| peptidase S14 ClpP [Paenibacillus sp. JDR-2]
          Length = 247

 Score = 55.0 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 25/187 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + LI ++    ++     +++ L++ GG   AG AI   I  +      +      +   
Sbjct: 69  EHLIPQLVAAEQNSKIEGILIVLNTVGGDVEAGLAIAEMISSLSKPTVTLVLGGGHSIGV 128

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              ++   + I A  T  +  I +      V    + L    + +             + 
Sbjct: 129 PIAVAGNMSFIAATATMTIHPIRLNGLVIGVPQTFEYLDKMQERILKFVTMHSNVTEEKF 188

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                +  +   D                          G    G++A K GLID VGG 
Sbjct: 189 KELMFKTGELTRDI-------------------------GTTVIGSDAVKYGLIDAVGGL 223

Query: 231 EEVWQSL 237
            +  + L
Sbjct: 224 GDALREL 230


>gi|257414294|ref|ZP_04745868.2| Clp protease [Roseburia intestinalis L1-82]
 gi|257200551|gb|EEU98835.1| Clp protease [Roseburia intestinalis L1-82]
 gi|291538992|emb|CBL12103.1| Protease subunit of ATP-dependent Clp proteases [Roseburia
           intestinalis XB6B4]
          Length = 252

 Score = 55.0 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 70/218 (32%), Gaps = 37/218 (16%)

Query: 35  SPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYA 82
              ++ + I G+IE              + ++ ++  +  +     L++ L++ GG   +
Sbjct: 56  KNKISLLTIIGEIEGHDCLPATTKTTKYEHVLPKLAELEDNPDTEGLLLLLNTVGGDVES 115

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           G AI   I  ++     +      +      +S   + IV + T ++  + +       K
Sbjct: 116 GLAIAEMIASIRKPTVSLVLGGSHSIGVPLAVSTDYSFIVPSGTMVIHPVRMSGTVIGAK 175

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
           P  D        +         +    +    +                    +  I   
Sbjct: 176 PTYDYFKQMQDRIVHFISTHSKASEKRLEELMM--------------------NTGILTK 215

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                  G I  G EA + GLI+ VGG  + +  L+ +
Sbjct: 216 DL-----GTILVGKEAVEEGLINEVGGISDAFSRLHQM 248


>gi|82702168|ref|YP_411734.1| hypothetical protein Nmul_A1039 [Nitrosospira multiformis ATCC
           25196]
 gi|82410233|gb|ABB74342.1| Protein of unknown function DUF107 [Nitrosospira multiformis ATCC
           25196]
          Length = 456

 Score = 55.0 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 84/246 (34%), Gaps = 22/246 (8%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIE 58
           M+ +++ +    + +  +  ++V  S           V  + I G I    +  +   +E
Sbjct: 1   MKLLIRTLFVSVLAMLFLLPSIVRASP----------VVVLKIDGPIAPASADFIQRGLE 50

Query: 59  RISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117
           R + +++A  +++ L +PGG      + I   +         +      AASAG  I  A
Sbjct: 51  RAA-NENALLVVLQLDTPGGLDTSMRQIIRGVLASPLPVATFVAPSGARAASAGTYILYA 109

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           S+       ++     +    P       +     +    S      +P  E        
Sbjct: 110 SH-----IAAMAPGTNLGAATPIEMGGFPRSEPEPRPQPKSGENRAQNPEKEGQLPVKDE 164

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           M   +      ++R +++ R    +     + +    + +EA  + ++D +    ++   
Sbjct: 165 MSRKMIHDAAAYIRGLAQMRGRNVEWAERAVREAVSLSASEALHLKVVDYIAT--DIADL 222

Query: 237 LYALGV 242
           L  L  
Sbjct: 223 LKQLNG 228


>gi|268323951|emb|CBH37539.1| conserved hypothetical membrane protein, containing NfeD-like
          domain [uncultured archaeon]
 gi|268325361|emb|CBH38949.1| conserved hypothetical membrane protein, containing NfeD-like
          domain [uncultured archaeon]
 gi|268325946|emb|CBH39534.1| conserved hypothetical membrane protein, containing NfeD-like
          domain [uncultured archaeon]
          Length = 443

 Score = 55.0 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 6  KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRD 63
          KK+   ++++ ++++   + ++    E+    +  + + G I +     ++E  +     
Sbjct: 3  KKLLRLFLIVLVLSVLFAFVAYGGGAEEGKRVIYVLNLEGTITEGSTLNVVEGFKEAEEI 62

Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQK 92
            A A++V L +PGG   +   I + I  
Sbjct: 63 -GADAVLVKLDTPGGLVGSTLEITKEIMN 90


>gi|160892565|ref|ZP_02073355.1| hypothetical protein CLOL250_00094 [Clostridium sp. L2-50]
 gi|156865606|gb|EDO59037.1| hypothetical protein CLOL250_00094 [Clostridium sp. L2-50]
          Length = 219

 Score = 55.0 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 69/223 (30%), Gaps = 37/223 (16%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
           +      ++  + I G+IE              + ++  +  +  D+S   ++V L++ G
Sbjct: 20  NGNKEKYNILLLDIIGEIEGHVSLPSDTKTTKYEHVLPELAVVQDDESIKGVLVLLNTVG 79

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G   AG AI   +  +      +      +      +S   + IV   T +V  + V   
Sbjct: 80  GDVEAGLAIAEMLASISKPVVTLVLGGSHSIGVPLAVSGDVSFIVPTATMVVHPLRVSDT 139

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
              V+   + +      +                                  +R +  + 
Sbjct: 140 VLGVRQNYEYIERMQDRI--------------------IQFTSCHSKIDEDSLRSIMFNT 179

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                       G +  G EA K G+ID +GG  +    LY L
Sbjct: 180 QELSKDI-----GSVLVGKEAVKCGIIDRIGGVSDALNILYDL 217


>gi|167630380|ref|YP_001680879.1| peptidase s14, clpp [Heliobacterium modesticaldum Ice1]
 gi|167593120|gb|ABZ84868.1| peptidase s14, clpp [Heliobacterium modesticaldum Ice1]
          Length = 255

 Score = 55.0 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 67/198 (33%), Gaps = 25/198 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + ++ ++  + +      +++ L++ GG   AG AI   +  +              +  
Sbjct: 79  EHILPQLVALEQSKDIEGVLLILNTVGGDVEAGLAIAEMVASL--------------SKP 124

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              I       +    ++     ++     +     +L   +  V +           ++
Sbjct: 125 SVSIVLGGGHSIGVPIAVSADYSMIASTATMTIHPIRLTGLVIGVPA-----TFEYLEKM 179

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + V  +      +   F  L+ ++  +  D       G +  G EA + GLID VGG 
Sbjct: 180 QDRVVAFVTRNSRITPEKFKELMFKTGELTRDI------GTVVVGKEAVEYGLIDAVGGI 233

Query: 231 EEVWQSLYALGVDQSIRK 248
            E  + L  L  ++   K
Sbjct: 234 SEAVKKLNELIEERRNNK 251


>gi|225181409|ref|ZP_03734853.1| peptidase S14 ClpP [Dethiobacter alkaliphilus AHT 1]
 gi|225167990|gb|EEG76797.1| peptidase S14 ClpP [Dethiobacter alkaliphilus AHT 1]
          Length = 255

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 72/212 (33%), Gaps = 37/212 (17%)

Query: 41  IAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           I I GQIE              + +I ++  I ++     L++ L++ GG   AG AI  
Sbjct: 59  IPIIGQIEGHITLAPQNKTTKYEHVIPQLVAIEQNPKIEGLLIILNTVGGDVEAGLAIAE 118

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
            +  +   KP ++ V     S G  I+ +++     ET+ +    +          L  L
Sbjct: 119 MVDTL--SKPTVSLVLGGGHSIGVPIAVSADYSFITETATMTVHPIR---------LSGL 167

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
            + +        K +      V   +           +                  L   
Sbjct: 168 VIGVPQTYEYLDKMQDRVIKFVTKHSRVTEDKFRHLMF--------------CTDQLARD 213

Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
            G +  G +A K GLID VGG  +  Q L  L
Sbjct: 214 IGTVMVGPDAVKDGLIDEVGGLAQAVQKLQEL 245


>gi|291557791|emb|CBL34908.1| ATP-dependent Clp protease proteolytic subunit ClpP [Eubacterium
           siraeum V10Sc8a]
          Length = 306

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 65/198 (32%), Gaps = 25/198 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + ++  +  I +D S   L++ L++ GG   AG AI   I  +      I        S 
Sbjct: 65  EHIMPALVAIEQDMSIDGLLIILNTVGGDVEAGLAISELIAGMSKPTVSIVVGGGH--SI 122

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  ++ ++       ++ +    V      +                            +
Sbjct: 123 GVPLAVSARKSFIVPSATMTIHPVRMNGLLL-----------------------GIPQTL 159

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
           +       + +   S +  ++       +     LV+  G +  G  A   GLID +GG 
Sbjct: 160 SYFERMQERIINFVSKNSRIKPERFRELMMKKDELVMDVGSVLDGETAVNEGLIDSLGGL 219

Query: 231 EEVWQSLYALGVDQSIRK 248
            +  Q LY+L   Q   K
Sbjct: 220 SDAVQCLYSLIEQQKTDK 237


>gi|153816437|ref|ZP_01969105.1| hypothetical protein RUMTOR_02690 [Ruminococcus torques ATCC 27756]
 gi|317500190|ref|ZP_07958422.1| translocation-enhancing protein TepA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087582|ref|ZP_08336512.1| hypothetical protein HMPREF1025_00095 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846225|gb|EDK23143.1| hypothetical protein RUMTOR_02690 [Ruminococcus torques ATCC 27756]
 gi|316898405|gb|EFV20444.1| translocation-enhancing protein TepA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330400453|gb|EGG80086.1| hypothetical protein HMPREF1025_00095 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 235

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 74/223 (33%), Gaps = 37/223 (16%)

Query: 38  VARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           +  + I G+IE              + L+ R+ +I  DD    +++ L++ GG   AG A
Sbjct: 32  IQLLTIIGEIEGHDSVSGNTKATKYEHLLPRLAQIEEDDETDGVLILLNTLGGDVEAGLA 91

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I   I  +      +      +      +S   + IV   T +V  +     +  V    
Sbjct: 92  IAEMIASLSKPTVSLVLGGSHSIGGPLAVSADYSFIVPTGTMIVHPVRSTGMFIGVMQSY 151

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
             +  +   +              +    +   Q V D                      
Sbjct: 152 RNMEKTQDRITKFIASHSNITQDRLLELMLDSSQLVKDV--------------------- 190

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
               G +  G +A K G+ID VGG +E +  L++L   +  ++
Sbjct: 191 ----GTMLEGEQAVKEGMIDEVGGIKEAFAKLHSLIDKEKEKQ 229


>gi|313114424|ref|ZP_07799950.1| Clp protease [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623251|gb|EFQ06680.1| Clp protease [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 236

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 53/189 (28%), Gaps = 25/189 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++     D     L+V L++ GG   AG A+   I  V      +      +   
Sbjct: 68  EHVIPQLVAAQEDPRIEGLLVLLNTVGGDVEAGLALAELIASVSKPSATLVLGGGHSIGI 127

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +S   + IV   T  V  +        V   +       + +               
Sbjct: 128 PLAVSARRSFIVPTATMTVHPVRHSGVILGVPQTMRSFEQMQQRITGFVAAHSGMTEKRY 187

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
               +   + V+D                          G +  G  A K  LID +GG 
Sbjct: 188 TDLMLHTGELVMDM-------------------------GTVLDGRRAVKEKLIDELGGL 222

Query: 231 EEVWQSLYA 239
            +    LY 
Sbjct: 223 SDALAWLYK 231


>gi|291545120|emb|CBL18229.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ruminococcus
           sp. 18P13]
          Length = 243

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 25/201 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I  +  I +D S   L++ L++ GG   AG AI   +  +K     +        S 
Sbjct: 66  EHIIPALVAIEQDRSIEGLLIILNTVGGDVEAGLAIAELLAGMKTPTVSLVVGGGH--SI 123

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  ++ ++       ++ +    V      V                       S F ++
Sbjct: 124 GVPLAVSAKRSFIVPSATMTIHPVRMNGMIVGVP-----------------QTLSYFKKM 166

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + V  +      S   F  L+ E       + LV+  G +  G  A ++GLID +GG 
Sbjct: 167 QDRIVNFVTANSGISEQQFRALMME------TEELVMDVGTVVDGERAVELGLIDSLGGL 220

Query: 231 EEVWQSLYALGVDQSIRKIKD 251
            +    LY L      R   D
Sbjct: 221 SDAVACLYGLIEAGEERYPDD 241


>gi|167750805|ref|ZP_02422932.1| hypothetical protein EUBSIR_01787 [Eubacterium siraeum DSM 15702]
 gi|167656240|gb|EDS00370.1| hypothetical protein EUBSIR_01787 [Eubacterium siraeum DSM 15702]
          Length = 320

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 70/220 (31%), Gaps = 25/220 (11%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + ++  +  I +D S   L++ L++ GG   AG AI   I  +      I        S 
Sbjct: 79  EHIMPALVAIEQDMSIDGLLIILNTVGGDVEAGLAISELIAGMSKPTVSIVVGGGH--SI 136

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  ++ ++       ++ +    V      +                            +
Sbjct: 137 GVPLAVSARKSFIVPSATMTIHPVRMNGLLL-----------------------GIPQTL 173

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
           +       + +   S +  ++       +     LV+  G +  G  A   GLID +GG 
Sbjct: 174 SYFERMQERIINFVSKNSRIKPERFRELMMKKDELVMDVGSVLDGETAVNEGLIDSLGGL 233

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270
            +  Q LY+L   Q   +        +      K  + S+
Sbjct: 234 SDAVQCLYSLIEQQKTDRESTKRTKHSTGKTVSKKRASSA 273


>gi|291545835|emb|CBL18943.1| Protease subunit of ATP-dependent Clp proteases [Ruminococcus sp.
           SR1/5]
          Length = 237

 Score = 54.6 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 71/231 (30%), Gaps = 37/231 (16%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
                   V  + + G+IE              + ++ ++  I  D+    L++ L++ G
Sbjct: 32  DGNSRKHKVELLTVIGEIEGHESAPSHSKTTKYEHVLPKLALIEDDEEIEGLLILLNTVG 91

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G   AG AI   I  +      +      +      +S   + IV + T +V  +     
Sbjct: 92  GDVEAGLAIAEMIASLSIPTVSLVLGGGHSIGVPMAVSADYSFIVPSATMVVHPVRQNGM 151

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +  V      +      + +            +    +   Q V D              
Sbjct: 152 FIGVAQSYRNMEKIQDRIIAFVSGHSHITAERMEELMLDTSQLVKDV------------- 198

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                       G +  G EA K GLID VGG  E    LY L   +  +K
Sbjct: 199 ------------GTMLEGEEAVKEGLIDEVGGIREALDRLYTLIERKKTQK 237


>gi|212546731|ref|XP_002153519.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Penicillium
           marneffei ATCC 18224]
 gi|210065039|gb|EEA19134.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Penicillium
           marneffei ATCC 18224]
          Length = 257

 Score = 54.6 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 67/195 (34%), Gaps = 29/195 (14%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++++  S  ++ ++  +  D+   A+ + ++SPGGS  AG AI+  +  +++  
Sbjct: 78  IICLNGEVDETTSAAIVAQLLFLEADNPEKAIHLYINSPGGSVTAGLAIYDTMTYIQSPV 137

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L    +        S +        Y      +      I  V  
Sbjct: 138 HTICVGQAASMGSLLLCGGHAGKRYCLPHSSIMIHQPSGGYFGQASDIAIHAKEILRV-- 195

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
                                          + R ++  + +  D+   L +   + G  
Sbjct: 196 ------------------------RTQLNQIYQRHLTGKKQLSLDEIEKLMERDYFMGAQ 231

Query: 217 EAKKVGLIDVVGGQE 231
           EA ++G++D +  + 
Sbjct: 232 EALEMGIVDEILDRR 246


>gi|56419814|ref|YP_147132.1| hypothetical protein GK1279 [Geobacillus kaustophilus HTA426]
 gi|56379656|dbj|BAD75564.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 246

 Score = 54.6 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 59/206 (28%), Gaps = 33/206 (16%)

Query: 43  IRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           I G I           + +I +I  I ++     L+V L++ GG   AG AI   +  + 
Sbjct: 53  IEGHIQLPPQNKATKYEHVIPQIVAIEQNPKIEGLLVILNTVGGDVEAGLAIAEMLASLS 112

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
                +      +      +SC  + I    T  +  I +      V    + L    + 
Sbjct: 113 KPTVSVVLGGGHSIGVPIAVSCNYSFITETATMTIHPIRLTGLVIGVPQTFEYLDKMQER 172

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
           V     K       +             D                          G    
Sbjct: 173 VVRFVTKHSKISEEKFKELMFSKGNLTRDI-------------------------GTNVV 207

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYAL 240
           G +A + GLID VGG  +    L  L
Sbjct: 208 GPDAVRYGLIDEVGGVSQAMAKLREL 233


>gi|255944899|ref|XP_002563217.1| Pc20g06920 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587952|emb|CAP86021.1| Pc20g06920 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 258

 Score = 54.6 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 66/195 (33%), Gaps = 29/195 (14%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ++D  S  ++ ++  +  D+ +  + + ++SPGGS  AG AI+  +  + +  
Sbjct: 74  IICLNGQVDDTLSASIVAQLLFLEADNPSKPIHLYINSPGGSVTAGLAIYDTMTYIASPV 133

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L    +        S +        Y      +      I  V  
Sbjct: 134 STICVGQAASMGSLLLAGGEAGKRYCLPHSSIMVHQPSGGYFGQASDIAIHAKEILRV-- 191

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
                                          + R ++  + +  D+   L +   + G  
Sbjct: 192 ------------------------RTQLNEIYQRHLTSKKKLSLDEIEKLMERDYFMGAK 227

Query: 217 EAKKVGLIDVVGGQE 231
           EA ++G++D +  + 
Sbjct: 228 EALELGVVDEILDRR 242


>gi|138894799|ref|YP_001125252.1| translocation-enhancing protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196247576|ref|ZP_03146278.1| peptidase S14 ClpP [Geobacillus sp. G11MC16]
 gi|134266312|gb|ABO66507.1| Translocation-enhancing protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196212360|gb|EDY07117.1| peptidase S14 ClpP [Geobacillus sp. G11MC16]
          Length = 245

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 57/195 (29%), Gaps = 25/195 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L+V L++ GG   AG AI   +  +      +      +   
Sbjct: 68  EHVIPQIVAIEQNPKIEGLLVILNTVGGDVEAGLAIAEMLASLSKPTVSVVLGGGHSIGV 127

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +SC  + I    T  +  I +      V    + L    + V     K       + 
Sbjct: 128 PIAVSCNYSFITETATMTIHPIRLTGLVIGVPQTFEYLDKMQERVVRFVTKHSNISEEKF 187

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                       D                          G    G +A + GLID VGG 
Sbjct: 188 KELMFSKGNLTRDI-------------------------GTNVIGPDAVQYGLIDEVGGV 222

Query: 231 EEVWQSLYALGVDQS 245
            +    L  L   + 
Sbjct: 223 SQAMAKLRQLIEMKK 237


>gi|300905038|ref|ZP_07122851.1| conserved domain protein [Escherichia coli MS 84-1]
 gi|300403056|gb|EFJ86594.1| conserved domain protein [Escherichia coli MS 84-1]
          Length = 170

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 44/103 (42%), Gaps = 13/103 (12%)

Query: 36  PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
             +A + + G              +     +I R+++ + D     +++ + +PGG    
Sbjct: 67  NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
                  I +V++ KPV    ++M  SAG L++ A++  +  +
Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQ 169


>gi|257470301|ref|ZP_05634392.1| peptidase S14, ClpP [Fusobacterium ulcerans ATCC 49185]
 gi|317064512|ref|ZP_07928997.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           ulcerans ATCC 49185]
 gi|313690188|gb|EFS27023.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           ulcerans ATCC 49185]
          Length = 367

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 76/217 (35%), Gaps = 41/217 (18%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSS 75
           ++FS  +  +D       I I G+I             +  I+++ +  +A  + + ++S
Sbjct: 5   LFFSIKNLSDDEGE----IRISGEITRWAWEEFGQTSSLIFIKQLEKIKNARKVSIKINS 60

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           PGG      AI+  ++++   K +   +  MA SA  LI+ A+   V  +         +
Sbjct: 61  PGGDISETLAIYHELKRLSQTKEITAYIDGMACSAATLIAIAAKKTVMGKGCYFMIHNPM 120

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
               Y                              N   +Q   + ++ +    + L  E
Sbjct: 121 IYMGYS-----------------------------NTGEMQEAIEHLNKTKENMIDLYEE 151

Query: 196 SRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQE 231
             ++  +     + +   +T  EA + G ID +   +
Sbjct: 152 KSSLSREDIAKKMDEETYFTAQEALEAGFIDEIASYD 188


>gi|218290114|ref|ZP_03494276.1| peptidase S14 ClpP [Alicyclobacillus acidocaldarius LAA1]
 gi|218239823|gb|EED07012.1| peptidase S14 ClpP [Alicyclobacillus acidocaldarius LAA1]
          Length = 259

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 64/196 (32%), Gaps = 25/196 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  +   D    L++ L++ GG   AG AI   +  +   K  +        S 
Sbjct: 72  EHVIPQLVAVEESDKIDGLLIILNTVGGDVEAGLAIAELVASMSKPKVSVVLGGGH--SI 129

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  I+ A++    AE++ +    +          L+ L + ++       K +      V
Sbjct: 130 GVPIAVAADYTFIAESASMTIHPIR---------LNGLVIGVQQSFEYLEKMQDRVIRFV 180

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
              +                     +             G    G +A K GL D VGG 
Sbjct: 181 VEHSRISEDMFRHLML---------NTGEMAKDI-----GTTVVGRDAVKYGLCDEVGGL 226

Query: 231 EEVWQSLYALGVDQSI 246
            +  + L  L  ++  
Sbjct: 227 GQAMKKLKDLIRERKE 242


>gi|291536145|emb|CBL09257.1| Protease subunit of ATP-dependent Clp proteases [Roseburia
           intestinalis M50/1]
          Length = 217

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 70/218 (32%), Gaps = 37/218 (16%)

Query: 35  SPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYA 82
              ++ + I G+IE              + ++ ++  +  +     L++ L++ GG   +
Sbjct: 21  KNKISLLTIIGEIEGHDCLPATTKTTKYEHVLPKLAELEDNPDTEGLLLLLNTVGGDVES 80

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           G AI   I  ++     +      +      +S   + IV + T ++  + +       K
Sbjct: 81  GLAIAEMIASIRKPTVSLVLGGSHSIGVPLAVSTDYSFIVPSGTMVIHPVRMSGTVIGAK 140

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
           P  D        +         +    +    +                    +  I   
Sbjct: 141 PTYDYFKQMQDRIVHFISTHSKASEKRLEELMM--------------------NTGILTK 180

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                  G I  G EA + GLI+ VGG  + +  L+ +
Sbjct: 181 DL-----GTILVGKEAVEEGLINEVGGISDAFSRLHQM 213


>gi|331091074|ref|ZP_08339916.1| hypothetical protein HMPREF9477_00559 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405296|gb|EGG84832.1| hypothetical protein HMPREF9477_00559 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 226

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 37/224 (16%)

Query: 37  HVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           ++  + I G+IE              + L+ ++  +   +    L++ L++ GG   AG 
Sbjct: 28  NIQLLTIIGEIEGHEAVSGNTKATKYEHLLPKLAEVEDSEEIEGLLILLNTLGGDVEAGL 87

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           AI   I  +       +    +  S       A +   +    +V S  ++         
Sbjct: 88  AIAEMIASLSKP----SVSLVLGGSHSIGGPLAVSADYSF---IVPSGTMVIHPVRSSGT 140

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
              +  S +++                 +    +   +    +     + E    P    
Sbjct: 141 FIGVMQSYRNM----------------ERTQNRITKFISEHANISQERIEELMLDPTQLV 184

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
             +  G +  G EA K GLID VGG +E  Q L+ L   Q+  K
Sbjct: 185 KDV--GTMLEGEEAVKEGLIDEVGGMKEALQKLHELIEIQAKNK 226


>gi|258511441|ref|YP_003184875.1| peptidase S14 ClpP [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478167|gb|ACV58486.1| peptidase S14 ClpP [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 259

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 63/196 (32%), Gaps = 25/196 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  +   D    L++ L++ GG   AG AI   +  +   K  +        S 
Sbjct: 72  EHVIPQLVAVEESDKIDGLLIILNTVGGDVEAGLAIAELVASMSKPKVSVVLGGGH--SI 129

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  I+ A++    AE++ +    +          L+ L + ++       K +      V
Sbjct: 130 GVPIAVAADYTFIAESASMTIHPIR---------LNGLVIGVQQSFEYLEKMQDRVIRFV 180

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
              +                     +             G    G +A K GL D VGG 
Sbjct: 181 VEHSRISEDMFRHLML---------NTGEMAKDI-----GTTVVGRDAVKYGLCDEVGGL 226

Query: 231 EEVWQSLYALGVDQSI 246
            +  + L  L  +   
Sbjct: 227 GQAMKKLKDLIREHKE 242


>gi|295103105|emb|CBL00649.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Faecalibacterium prausnitzii SL3/3]
          Length = 227

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 54/189 (28%), Gaps = 25/189 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  +  D     L+V L++ GG    G A+   I  +      +      +   
Sbjct: 59  EHVIPQLVAVQEDPRIEGLLVLLNTVGGDVETGLALAELIASISKPSATLVLGGGHSIGI 118

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +S   + IV   T  V  +        V   +       + +          P    
Sbjct: 119 PLAVSARHSFIVPTATMTVHPVRHSGLILGVPQTMHCFEQMQQRITGFVAAHSGMPEKRY 178

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
               +   + V+D                          G +  G  A K  LID +GG 
Sbjct: 179 TQLMLHTGELVMDM-------------------------GTVLDGRRAVKEKLIDELGGL 213

Query: 231 EEVWQSLYA 239
            +    LY 
Sbjct: 214 SDALAWLYG 222


>gi|315453779|ref|YP_004074049.1| ATP-dependent clp protease proteolytic subunit [Helicobacter felis
           ATCC 49179]
 gi|315132831|emb|CBY83459.1| ATP-dependent clp protease proteolytic subunit [Helicobacter felis
           ATCC 49179]
          Length = 197

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I D+    ++ ++  +  +D    + + ++SPGGS  +G +I+  +  +    
Sbjct: 29  IVLLSGEINDAVASSIVAQLLFLEAEDPEKDINLYINSPGGSVTSGFSIYDTMNYIHPDI 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     +   S +     L         L            
Sbjct: 89  CTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGTQGQASNLAIYTKE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +        ++++ +   P DK    +D   + +  
Sbjct: 143 ------------------------ILRLKDLLNQIMATNTGQPLDKIEQDTDRDFFMSAL 178

Query: 217 EAKKVGLIDVV 227
           EAK+ GL+D V
Sbjct: 179 EAKEYGLVDEV 189


>gi|170754867|ref|YP_001781951.1| Clp protease [Clostridium botulinum B1 str. Okra]
 gi|169120079|gb|ACA43915.1| clp protease [Clostridium botulinum B1 str. Okra]
          Length = 230

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 74/237 (31%), Gaps = 37/237 (15%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVS 72
           F  ++     +  +  + I GQIE              + LI ++  +        + + 
Sbjct: 17  FGTTNLPPRQADRIQVLPIIGQIEGHMVLSPQTKATRYEHLIPQLIALETSKEVEGVFII 76

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           L++ GG   AG AI   I+ +      +      +       S   + I    T +V  I
Sbjct: 77  LNTVGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGVPLATSADYSFISPTATMIVHPI 136

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
            +      V    +      + +    ++       ++    +Q  + + D         
Sbjct: 137 RMNGLIIGVPQTFEYFNKMQERIIEFIVRTSKISKEKLKEFMLQSDELLNDM-------- 188

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
                            G I  G +A + G+I+ VGG +E    L  L  ++    +
Sbjct: 189 -----------------GTILIGKQAVESGIINEVGGVKEALDKLNNLIDEKQKENV 228


>gi|148380363|ref|YP_001254904.1| Clp protease [Clostridium botulinum A str. ATCC 3502]
 gi|153932771|ref|YP_001384583.1| Clp protease [Clostridium botulinum A str. ATCC 19397]
 gi|153934679|ref|YP_001388099.1| Clp protease [Clostridium botulinum A str. Hall]
 gi|153941144|ref|YP_001391706.1| Clp protease [Clostridium botulinum F str. Langeland]
 gi|168180713|ref|ZP_02615377.1| clp protease [Clostridium botulinum NCTC 2916]
 gi|170759121|ref|YP_001787719.1| Clp protease [Clostridium botulinum A3 str. Loch Maree]
 gi|226949761|ref|YP_002804852.1| Clp protease family protein [Clostridium botulinum A2 str. Kyoto]
 gi|148289847|emb|CAL83955.1| translocation-enhancing protein TepA [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928815|gb|ABS34315.1| Clp protease family protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152930593|gb|ABS36092.1| Clp protease family protein [Clostridium botulinum A str. Hall]
 gi|152937040|gb|ABS42538.1| clp protease [Clostridium botulinum F str. Langeland]
 gi|169406110|gb|ACA54521.1| Clp protease family protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|182668575|gb|EDT80554.1| clp protease [Clostridium botulinum NCTC 2916]
 gi|226841950|gb|ACO84616.1| Clp protease family protein [Clostridium botulinum A2 str. Kyoto]
 gi|295319734|gb|ADG00112.1| clp protease [Clostridium botulinum F str. 230613]
 gi|322806674|emb|CBZ04243.1| translocation-enhancing protein TepA [Clostridium botulinum H04402
           065]
          Length = 230

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 74/237 (31%), Gaps = 37/237 (15%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVS 72
           F  ++     +  +  + I GQIE              + LI ++  +        + + 
Sbjct: 17  FGTTNLPPRQADRIQVLPIIGQIEGHMVLSPQTKATRYEHLIPQLIALETSKEVEGVFII 76

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           L++ GG   AG AI   I+ +      +      +       S   + I    T +V  I
Sbjct: 77  LNTVGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGVPLATSADYSFISPTATMIVHPI 136

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
            +      V    +      + +    ++       ++    +Q  + + D         
Sbjct: 137 RMNGLIIGVPQTFEYFNKMQERIIEFIVRTSKISKEKLKEFMLQSDELLNDM-------- 188

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
                            G I  G +A + G+I+ VGG +E    L  L  ++    +
Sbjct: 189 -----------------GTILIGKQAVESGIINEVGGVKEALDKLNNLIDEKQKEDV 228


>gi|253573584|ref|ZP_04850927.1| peptidase S14 ClpP [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847112|gb|EES75117.1| peptidase S14 ClpP [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 253

 Score = 53.8 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 73/227 (32%), Gaps = 37/227 (16%)

Query: 34  NSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAY 81
              +V  + I GQIE              + +I ++    ++     L++ L++ GG   
Sbjct: 45  GESNVYCLTIIGQIEGHLVLPPQNKTTKYEHVIPQLVAAEQNPRIEGLLIILNTVGGDVE 104

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
           AG AI   I  +   KP +T V     S G  I+ AS+  + AE++ +    +       
Sbjct: 105 AGLAIAEMIASL--SKPTVTVVIGGGHSIGVPIAVASDYSLIAESATMTIHPIRMT---- 158

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
                        +     +               +      S   +   +         
Sbjct: 159 ------------GLVIGVPQTFEYIEKMQERVVRFVTTHSKISEEKFKELMFKTGELNR- 205

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                   G    G++A K GLID +GG  +    L ++   +   K
Sbjct: 206 ------DIGTAVGGSDAVKYGLIDAIGGIGDGLAKLNSMIESKRQAK 246


>gi|121705182|ref|XP_001270854.1| Clp protease, putative [Aspergillus clavatus NRRL 1]
 gi|119399000|gb|EAW09428.1| Clp protease, putative [Aspergillus clavatus NRRL 1]
          Length = 256

 Score = 53.8 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 63/195 (32%), Gaps = 29/195 (14%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++++S    ++ ++  +  D+    + + ++SPGGS  AG AI+  +  + +  
Sbjct: 71  IICLNGEVDESMSASIVAQLLFLEADNPQKPIHLYINSPGGSVTAGLAIYDTMTYITSPV 130

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L             S +        Y      +      I  V+S
Sbjct: 131 STICVGQAASMGSLLLCGGHPGKRYCLPHSSIMIHQPSGGYFGQASDIAIHAKEILRVRS 190

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA- 216
              K      +                                 ++   L +   + GA 
Sbjct: 191 QLNKIYKRHLTGNKEL--------------------------SLEEIEKLMERDYFMGAN 224

Query: 217 EAKKVGLIDVVGGQE 231
           EA ++G++D +  + 
Sbjct: 225 EALEMGIVDEILDRR 239


>gi|242822497|ref|XP_002487898.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Talaromyces
           stipitatus ATCC 10500]
 gi|218712819|gb|EED12244.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Talaromyces
           stipitatus ATCC 10500]
          Length = 262

 Score = 53.8 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 63/195 (32%), Gaps = 29/195 (14%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++++  S  ++ ++  +  D     + + ++SPGGS  AG AI+  +  +++  
Sbjct: 79  IICLNGEVDETTSASIVAQLLFLEADSPEKPIHLYINSPGGSVTAGLAIYDTMTYIQSPV 138

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L    +        S +        Y      +      I  V++
Sbjct: 139 NTICVGQAASMGSLLLCGGHAGKRYCLPHSSIMIHQPSGGYFGQASDIAIHAKEILRVRT 198

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
              K      +                                 D+   L +   + G  
Sbjct: 199 QLNKIYQRHLTGKKQL--------------------------SLDEIEKLMERDYFMGAQ 232

Query: 217 EAKKVGLIDVVGGQE 231
           EA ++G++D +  + 
Sbjct: 233 EALEMGIVDEILDRR 247


>gi|134299785|ref|YP_001113281.1| peptidase S14, ClpP [Desulfotomaculum reducens MI-1]
 gi|134052485|gb|ABO50456.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Desulfotomaculum reducens MI-1]
          Length = 276

 Score = 53.8 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 73/214 (34%), Gaps = 33/214 (15%)

Query: 43  IRGQIE--------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           I G I           + +I ++  I +DD+   +++ L++ GG   AG AI   +    
Sbjct: 83  IEGHIMLPAQNKTTKYEHIIPQLVGIEQDDNVEGVLLVLNTVGGDVEAGLAIAEVVA--T 140

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
             KP +T V     S G  I+ +S     A T+ +    +          L+ L + +  
Sbjct: 141 MTKPTVTLVLGGGHSIGVPIAVSSKYSYIAPTASMTIHPIR---------LNGLVIGVPQ 191

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
                 K +      V   +    +      +                       G +  
Sbjct: 192 TYDYLDKMQDRVIRFVTEHSRVTEEKFRQLMFKTGELAR--------------DIGTVVI 237

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           G +A + GLID VGG  +    L  L  +Q  ++
Sbjct: 238 GKDAVETGLIDAVGGVGQAMCKLKELIEEQKGKE 271


>gi|168184614|ref|ZP_02619278.1| Clp protease [Clostridium botulinum Bf]
 gi|182672304|gb|EDT84265.1| Clp protease [Clostridium botulinum Bf]
          Length = 226

 Score = 53.8 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 37/235 (15%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVS 72
           F  ++     +  +  + I GQIE              + LI ++  +        + + 
Sbjct: 17  FGTTNLPPRQADRIQVLPIIGQIEGHMVLSPQTKATRYEHLIPQLIALETSKDVEGVFII 76

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           L++ GG   AG AI   I+ +      +      +       S   + I    T +V  I
Sbjct: 77  LNTVGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGVPLATSADYSFISPTATMIVHPI 136

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
            +      V    +      + +    ++       ++    +Q  + + D         
Sbjct: 137 RMNGLIIGVPQTFEYFNKMQERIIEFIVRTSKISKEKLKEFMLQSDELLNDM-------- 188

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
                            G I  G +A + G+I+ VGG +E    L  L  ++   
Sbjct: 189 -----------------GTILIGKQAVESGIINEVGGVKEALDKLNNLIDEKQKP 226


>gi|160945600|ref|ZP_02092826.1| hypothetical protein FAEPRAM212_03129 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443331|gb|EDP20336.1| hypothetical protein FAEPRAM212_03129 [Faecalibacterium prausnitzii
           M21/2]
          Length = 227

 Score = 53.8 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 55/189 (29%), Gaps = 25/189 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  +  D     L+V L++ GG   AG A+   I  +      +      +   
Sbjct: 59  EHVIPQLVAVQEDPRIEGLLVLLNTVGGDVEAGLALAELIASISKPSATLVLGGGHSIGI 118

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +S   + IV   T  V  +        V   +       + +          P    
Sbjct: 119 PLAVSARHSFIVPTATMTVHPVRHSGLILGVPQTMHCFEQMQQRITGFVAAHSGMPEKRY 178

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
               +   + V+D                          G +  G  A K  LID +GG 
Sbjct: 179 TQLMLHTGELVMDM-------------------------GTVLDGRRAVKEKLIDELGGL 213

Query: 231 EEVWQSLYA 239
            +    LY 
Sbjct: 214 SDALAWLYG 222


>gi|317492300|ref|ZP_07950729.1| protease IV [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919639|gb|EFV40969.1| protease IV [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 167

 Score = 53.8 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 58/163 (35%), Gaps = 28/163 (17%)

Query: 10  TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------------ 51
             +++L ++    +YF   S   +       + + G + D+                   
Sbjct: 2   NVFLILLILVCVGIYFQMQSKPVEPVKGALLVNLTGVVVDNPAISNKFSQLGREILGANS 61

Query: 52  ---------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVIT 101
                    ++++ I +   D + T +++SL+   G+     + I +A+++ ++    I 
Sbjct: 62  NRLQENSLFDVVDMIRQAKTDPNITGMVLSLNDFAGADQPSLQYIGKALREFRDSGKPIF 121

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
              +    A Y ++  +N I  +  +    +G L      K  
Sbjct: 122 ATADSYNQAQYYLASYANKIYLSPQAWSICMGWLLITSITKHC 164


>gi|237795844|ref|YP_002863396.1| Clp protease family protein [Clostridium botulinum Ba4 str. 657]
 gi|229262404|gb|ACQ53437.1| Clp protease family protein [Clostridium botulinum Ba4 str. 657]
          Length = 226

 Score = 53.5 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 37/235 (15%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVS 72
           F  ++     +  +  + I GQIE              + LI ++  +        + + 
Sbjct: 17  FGTTNLPPRQADRIQVLPIIGQIEGHMVLSPQTKATRYEHLIPQLIALETSKDVEGVFII 76

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           L++ GG   AG AI   I+ +      +      +       S   + I    T +V  I
Sbjct: 77  LNTVGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGVPLATSADYSFISPTATMIVHPI 136

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
            +      V    +      + +    ++       ++    +Q  + + D         
Sbjct: 137 RMNGLIIGVPQTFEYFNKMQERIIEFIVRTSKISKEKLKEFMLQSDELLNDM-------- 188

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
                            G I  G +A + G+I+ VGG +E    L  L  ++   
Sbjct: 189 -----------------GTILIGKQAVESGIINEVGGVKEALNKLNNLIDEKQKP 226


>gi|226326248|ref|ZP_03801766.1| hypothetical protein PROPEN_00090 [Proteus penneri ATCC 35198]
 gi|225205326|gb|EEG87680.1| hypothetical protein PROPEN_00090 [Proteus penneri ATCC 35198]
          Length = 166

 Score = 53.5 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 42/135 (31%), Gaps = 29/135 (21%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51
           + F+ K I    +  L  + + +   S  +    +      + ++G I D          
Sbjct: 19  INFIRKLILNVIFFFLLFMVIGIFLISKEAQKPMDYEGALLVDLKGVIVDQTATQNPLGE 78

Query: 52  -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91
                              E+++ + R ++D     +++ L    G+       I +A+ 
Sbjct: 79  VGRELLGVSSSQLQENSLFEVVDTLRRATQDPKIKGMVLKLDEFAGADQPSLNYIGKALN 138

Query: 92  KVKNRKPVITEVHEM 106
           + K  +        +
Sbjct: 139 EFKKDRQTDFCSKWL 153


>gi|39977745|ref|XP_370260.1| hypothetical protein MGG_06757 [Magnaporthe oryzae 70-15]
 gi|145013724|gb|EDJ98365.1| hypothetical protein MGG_06757 [Magnaporthe oryzae 70-15]
          Length = 274

 Score = 53.5 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 63/206 (30%), Gaps = 27/206 (13%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G I+D     +  ++  + +D     + + ++SPGG   +G AI+  +  + +  
Sbjct: 74  IVCLNGPIDDWTQASVTAQLLWLEQDSPHKPITLYINSPGGQVSSGLAIYDTMNYISSPV 133

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L+  A+    A   S +     L         +      I  ++ 
Sbjct: 134 HTVCVGMAASMGAILLLGGAAGQRYALPHSQIMVHQPLGSTQGQASDIIIYAKQITRIR- 192

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216
                                   ++      +   +        +   + +  +  T  
Sbjct: 193 ----------------------SQINDIMRRHLNTAAGRERFAAQEVDEMMERDKYLTAD 230

Query: 217 EAKKVGLIDVVGGQE-EVWQSLYALG 241
           EA ++G++D +     +   S     
Sbjct: 231 EAVELGIVDKILTSRSDAVASALNDA 256


>gi|153812753|ref|ZP_01965421.1| hypothetical protein RUMOBE_03160 [Ruminococcus obeum ATCC 29174]
 gi|149831113|gb|EDM86202.1| hypothetical protein RUMOBE_03160 [Ruminococcus obeum ATCC 29174]
          Length = 243

 Score = 53.5 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 64/197 (32%), Gaps = 25/197 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + ++ ++  I  D++   L++ L++ GG   AG AI   I  +      +      +   
Sbjct: 71  EHVLPKLAMIEDDENVEGLLILLNTVGGDVEAGLAIAEMIASLSIPTVSLVLGGGHSIGV 130

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +S   +  V + T ++  +     +  V      +      +         +    +
Sbjct: 131 PMAVSADYSFAVPSATMVIHPVRSSGMFIGVAQTYRNMEKIQDRITGFIAAHSRASQERL 190

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
               +   Q V D                          G +  G EA K GLID +GG 
Sbjct: 191 EELMLDTSQLVKDV-------------------------GTLLEGEEAVKEGLIDEIGGI 225

Query: 231 EEVWQSLYALGVDQSIR 247
            E    L+ +   ++ +
Sbjct: 226 REALAKLHEMIDAKNNK 242


>gi|115384910|ref|XP_001209002.1| ATP-dependent Clp protease proteolytic subunit [Aspergillus terreus
           NIH2624]
 gi|114196694|gb|EAU38394.1| ATP-dependent Clp protease proteolytic subunit [Aspergillus terreus
           NIH2624]
          Length = 258

 Score = 53.5 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 61/195 (31%), Gaps = 29/195 (14%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++++  S  ++ ++  +  D+    + + ++SPGGS  AG AI+  +  + +  
Sbjct: 73  IICLNGEVDETMSASIVAQLLFLEADNPQKPIHLYINSPGGSVTAGLAIYDTMTYIASPV 132

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L             S +        Y      +      I  V+ 
Sbjct: 133 STICVGQAASMGSLLLCGGHPGKRYCLPHSSIMMHQPSGGYFGQASDIAIHAKEILRVRE 192

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
              K      +                              +  ++   L +   + G  
Sbjct: 193 QLNKIYKRHLTGKKE--------------------------MSLEEIEKLMERDYFMGAK 226

Query: 217 EAKKVGLIDVVGGQE 231
           EA  +G++D V  + 
Sbjct: 227 EALDMGIVDEVLDRR 241


>gi|313123951|ref|YP_004034210.1| ATP-dependent clp protease proteolytic subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280514|gb|ADQ61233.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 244

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 71/200 (35%), Gaps = 49/200 (24%)

Query: 41  IAIRGQIEDS------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           I I G+I  S            ++L+++I           + + ++SPGG  + G AI+ 
Sbjct: 19  IDIEGEITSSVYNETQTSASQFRDLLKQI------GDVKTINLHINSPGGDVFEGVAIYN 72

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
            ++  +++  +   +  +AAS   +I+ A N I+  E S++                   
Sbjct: 73  MLK--QSKADINVYIDGLAASIASVIAMAGNTIIMPENSMLMIHN--------------- 115

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
                ++     K       +++  +  +              L   +  +  D    L 
Sbjct: 116 ---PWTIAQGNSKELRKIADDMDKMSESIKTSY----------LSKSNDKLDLDTLNQLM 162

Query: 209 DGRIW-TGAEAKKVGLIDVV 227
           D   W T  EA + GL D V
Sbjct: 163 DEETWLTAKEATEYGLADEV 182


>gi|187778999|ref|ZP_02995472.1| hypothetical protein CLOSPO_02594 [Clostridium sporogenes ATCC
           15579]
 gi|187772624|gb|EDU36426.1| hypothetical protein CLOSPO_02594 [Clostridium sporogenes ATCC
           15579]
          Length = 231

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 37/235 (15%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVS 72
           F  ++     +  +  + I GQIE              + LI ++  +        + + 
Sbjct: 22  FGTTNLPPRQADRIQVLPIIGQIEGHMVLSPQTKATRYEHLIPQLIALETSKEVEGVFII 81

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           L++ GG   AG AI   I+ +      +      +       S   + I    T +V  I
Sbjct: 82  LNTVGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGVPLATSADYSFISPTATMIVHPI 141

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
            +      V    +      + +    ++       ++    +Q  + + D         
Sbjct: 142 RMNGLIIGVPQTFEYFNKMQERIIEFIVRTSKISKEKLKEFMLQSDELLNDM-------- 193

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
                            G I  G +A + G+I+ VGG +E    L  L  ++   
Sbjct: 194 -----------------GTILIGKQAVESGIINEVGGVKEALDKLNNLIDEKQKP 231


>gi|218262799|ref|ZP_03477157.1| hypothetical protein PRABACTJOHN_02837 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223131|gb|EEC95781.1| hypothetical protein PRABACTJOHN_02837 [Parabacteroides johnsonii
           DSM 18315]
          Length = 460

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 95/256 (37%), Gaps = 19/256 (7%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD-SATALIV 71
           + L L  + V    + S  +   P V +I I+ +I ++  L  R      +   A A+++
Sbjct: 5   LGLFLAIILVQIAPFISAADTLHPLVYKIDIKKEISNTTRLYLRGGLAEANALGADAVLI 64

Query: 72  SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
            +++ GG   A +++  AI  + N  PV   +   AASAG LIS A   I   + + +G+
Sbjct: 65  HMNTYGGQVDAADSMRTAI--LYNSIPVYVFIDNNAASAGALISIACKKIYMRKGANIGA 122

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
             V+ Q     P         +S   S M++      +                      
Sbjct: 123 ATVVNQTGAAMP------DKYQSYMRSMMRSTAEAHGQDTIIQKNDTLYKWKRDPLIAEA 176

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIK 250
           +V E   IP    +       +T  EA+K G  D +    +EV              +++
Sbjct: 177 MVDERVAIP--NLIDTGKVLTFTAQEAQKWGYCDGIAENPDEVITQYLG----YKDYEMR 230

Query: 251 DWNPPKNYWFCDLKNL 266
            + P    W  DLK  
Sbjct: 231 SYTP---SWQDDLKGF 243


>gi|167769170|ref|ZP_02441223.1| hypothetical protein ANACOL_00493 [Anaerotruncus colihominis DSM
           17241]
 gi|167668810|gb|EDS12940.1| hypothetical protein ANACOL_00493 [Anaerotruncus colihominis DSM
           17241]
          Length = 240

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  + +D     L+V L++ GG   AG AI   +     RKP ++ V     S 
Sbjct: 70  EHVIPQLLAVEQDPEIEGLVVILNTVGGDVEAGLAIAELLS--GMRKPTVSLVLGGGHSI 127

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  ++ ++       ++ +    V      +                       S F  +
Sbjct: 128 GVPLAVSARRSFIVPSATMTVHPVRMNGLVLGVP-----------------QTLSYFDRM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + V+ + D    S   F +L+           LV+  G +  G  A   GLID +GG 
Sbjct: 171 QERIVKFVTDNSRISPERFRQLMMN------KDELVMDVGTVLDGQAAVDEGLIDSLGGV 224

Query: 231 EEVWQSLYAL 240
            +V  +LY +
Sbjct: 225 SDVIAALYEM 234


>gi|163119655|ref|YP_080707.2| ATP-dependent protease proteolytic subunit [Bacillus licheniformis
           ATCC 14580]
 gi|145903165|gb|AAU25069.2| ATP-dependent protease proteolytic subunit (class III heat-shock
           protein) [Bacillus licheniformis ATCC 14580]
          Length = 230

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 62/207 (29%), Gaps = 36/207 (17%)

Query: 35  SPHVARIAIRGQIEDSQELIERIERISRDD-----SATALIVSLSSPGGSAYAGEAIFRA 89
           +   A I + G I       E   +  + +       +++ + ++SPGG  + G+AI   
Sbjct: 5   NDSTAEITLYGSITGEGWFSESSSKAFQAELKSLGDVSSIDLYINSPGGDVFEGQAIHSM 64

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           +Q+ K +      V  +A S   +I+ A + I     +++                 K  
Sbjct: 65  LQRHKAKIN--VYVDALAGSIASVIAMAGDKITMPSNAMMMIHNPYMGMVGNAAEFRKAA 122

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
             +  +                                    L      +       L D
Sbjct: 123 DDLDKITE----------------------------SIVSTYLAKAGDKLDDGTLRQLLD 154

Query: 210 GRIW-TGAEAKKVGLIDVVGGQEEVWQ 235
              W T  EA   GLID V   ++V  
Sbjct: 155 EETWLTADEALNYGLIDEVSESKDVAA 181


>gi|210612604|ref|ZP_03289395.1| hypothetical protein CLONEX_01597 [Clostridium nexile DSM 1787]
 gi|210151529|gb|EEA82536.1| hypothetical protein CLONEX_01597 [Clostridium nexile DSM 1787]
          Length = 236

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 75/234 (32%), Gaps = 37/234 (15%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73
           S      +   ++  + I G+IE              + L+ ++  +  ++    L++ L
Sbjct: 20  SIELTHNNRKHNIQLLTIIGEIEGHEAVSGNTKATKYEHLLPKLAEVEDNEEIEGLLILL 79

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           ++ GG   AG AI   I  +      +      +      +S   + IV + T ++  + 
Sbjct: 80  NTLGGDVEAGLAIAEMIASLSKPTVSLVLGGSHSIGGPLAVSADYSFIVPSGTMIIHPVR 139

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
               +  V      +  +   +              +    +   Q V D          
Sbjct: 140 SNGMFIGVIQSYRNMERTQDRIIRFLAGHSHMTQERIEELMLDSTQLVKDV--------- 190

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
                           G +  G EA K GLID VGG  +    L+ +   ++I+
Sbjct: 191 ----------------GTLLEGEEAVKEGLIDAVGGMSDALTKLHEMIEKKTIK 228


>gi|73540556|ref|YP_295076.1| hypothetical protein Reut_A0853 [Ralstonia eutropha JMP134]
 gi|72117969|gb|AAZ60232.1| Protein of unknown function DUF107 [Ralstonia eutropha JMP134]
          Length = 472

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 96/311 (30%), Gaps = 37/311 (11%)

Query: 1   MEFVLKKIK--TRYVMLSLVTLTVVYFSWSSHVEDNSPHVA------RIAIRGQI--EDS 50
           M F + ++     YV L L    +     +      +  VA       I ++G I    +
Sbjct: 1   MRFAIARLAHPWLYVGLLLAGFALAVLGAAPTASVPAGTVAGTAPVYVIPLKGAIGPASA 60

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
             ++  +ER      A  +++ + +PGG   +   I +AI                 A++
Sbjct: 61  SFVLRGMERARE-GGAQLVVLEMDTPGGLDLSMREIIQAILASPVPIASYVFPGGARAAS 119

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
                  ++ I A                        + + I   +        SP SE 
Sbjct: 120 AGTYILYASHIAA------------MAPGTNLGAASPVQIGIGGPQKPEAAPASSPASEP 167

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG- 229
             +     + + D+S +         RN  + +   + +    +  EA    ++D+V   
Sbjct: 168 AAQDTMTRKQMHDASAYIRGLAQLRGRNAHWAE-RAVREAVSLSATEAATQRVVDMVATD 226

Query: 230 QEEVWQSL---------YALGVDQSIRKIKDWNP-PKNYWFCDLKNLSISSLL--EDTIP 277
             ++ + +             +      +    P  ++ +   +   S++ LL       
Sbjct: 227 LPDLLRKVNGKRITAAGVERVLQTDRATVVTLEPDWRSRFLAVITEPSVALLLMMIGIYG 286

Query: 278 LMKQTKVQGLW 288
           L+ +    G+ 
Sbjct: 287 LIFEFSTPGMV 297


>gi|308068716|ref|YP_003870321.1| translocation-enhancing protein tepA [Paenibacillus polymyxa E681]
 gi|305857995|gb|ADM69783.1| Translocation-enhancing protein tepA [Paenibacillus polymyxa E681]
          Length = 282

 Score = 53.1 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 52/187 (27%), Gaps = 25/187 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++    ++     L++ L++ GG   AG AI   I  +      I          
Sbjct: 74  EHIIPQLVAAEQNPRIEGLMILLNTVGGDVEAGLAIAEMIASMSKPTVTIVIGG----GH 129

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +  A +                  Y      +    + +  +     +         
Sbjct: 130 SIGVPIAVSSTY--------------SYIAESATMTIHPIRMNGLVIGVPQTFEYMEKMQ 175

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                 ++     +   +   +                 G    GA+A K GL+D VGG 
Sbjct: 176 ERVVRFVVSHSRITEKQFKELMFKTGELNR-------DIGTAVGGADAVKYGLMDAVGGI 228

Query: 231 EEVWQSL 237
            E  + L
Sbjct: 229 GEALKQL 235


>gi|315648078|ref|ZP_07901179.1| peptidase S14 ClpP [Paenibacillus vortex V453]
 gi|315276724|gb|EFU40067.1| peptidase S14 ClpP [Paenibacillus vortex V453]
          Length = 258

 Score = 53.1 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 25/187 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++    ++     L++ L++ GG   AG AI   I  +   KP +T V     S 
Sbjct: 80  EHMIPQLVAAEQNPRIEGLLIILNTVGGDVEAGLAIAEMIASL--SKPTVTVVIGGGHSI 137

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  I+ A++  + AE++ +    +                    +     +         
Sbjct: 138 GVPIAVAADHSIIAESATMTIHPIRMS----------------GLVIGVPQTFEYMEKMQ 181

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                 +      +   +   + +               G   +G +A K GL+D VGG 
Sbjct: 182 ERVVRFVTSHSGITEERFKNLMFATGELNR-------DIGTAVSGVDAVKYGLMDEVGGI 234

Query: 231 EEVWQSL 237
            +    L
Sbjct: 235 GQALSRL 241


>gi|52787302|ref|YP_093131.1| hypothetical protein BLi03615 [Bacillus licheniformis ATCC 14580]
 gi|52349804|gb|AAU42438.1| ClpP [Bacillus licheniformis ATCC 14580]
          Length = 243

 Score = 53.1 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 62/207 (29%), Gaps = 36/207 (17%)

Query: 35  SPHVARIAIRGQIEDSQELIERIERISRDD-----SATALIVSLSSPGGSAYAGEAIFRA 89
           +   A I + G I       E   +  + +       +++ + ++SPGG  + G+AI   
Sbjct: 18  NDSTAEITLYGSITGEGWFSESSSKAFQAELKSLGDVSSIDLYINSPGGDVFEGQAIHSM 77

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           +Q+ K +      V  +A S   +I+ A + I     +++                 K  
Sbjct: 78  LQRHKAKIN--VYVDALAGSIASVIAMAGDKITMPSNAMMMIHNPYMGMVGNAAEFRKAA 135

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
             +  +                                    L      +       L D
Sbjct: 136 DDLDKITE----------------------------SIVSTYLAKAGDKLDDGTLRQLLD 167

Query: 210 GRIW-TGAEAKKVGLIDVVGGQEEVWQ 235
              W T  EA   GLID V   ++V  
Sbjct: 168 EETWLTADEALNYGLIDEVSESKDVAA 194


>gi|297530546|ref|YP_003671821.1| peptidase S14 ClpP [Geobacillus sp. C56-T3]
 gi|297253798|gb|ADI27244.1| peptidase S14 ClpP [Geobacillus sp. C56-T3]
          Length = 246

 Score = 53.1 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 59/206 (28%), Gaps = 33/206 (16%)

Query: 43  IRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           I G I           + +I +I  I ++     L+V L++ GG   AG AI   +  + 
Sbjct: 53  IEGHIQLPPQNKATKYEHVIPQIVAIEQNPKIEGLLVILNTVGGDVEAGLAIAEMLASLS 112

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
                +      +      +SC  + I    T  +  I +      V    + L    + 
Sbjct: 113 KPTVSVVLGGGHSIGVPIAVSCNYSFITETATMTIHPIRLTGLVIGVPQTFEYLDKMQER 172

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
           V     K       +             D                          G    
Sbjct: 173 VVRFVTKHSKISEEKFKELMFSKGNLTRDI-------------------------GTNVV 207

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYAL 240
           G +A + GLID VGG  +    L  L
Sbjct: 208 GPDAVRYGLIDEVGGVSQAMAKLRGL 233


>gi|210076021|ref|XP_505327.2| YALI0F12353p [Yarrowia lipolytica]
 gi|199424953|emb|CAG78134.2| YALI0F12353p [Yarrowia lipolytica]
          Length = 263

 Score = 53.1 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 69/203 (33%), Gaps = 15/203 (7%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G I+DS    ++ ++  +    +   + + ++SPGG+  AG AI   +  +++  
Sbjct: 55  IVHVAGPIDDSMATSVVAQLLYLEHKSAQKPIHMYINSPGGAVTAGFAILDTMNYIRSPV 114

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      + ++  L   A    +    S + +   L         ++     ++ +++
Sbjct: 115 HTVCLGQAASMASLLLTCGAPGNRIMTPNSTIMTHEPLGGIVGSSKLVELHTFHLQRIRT 174

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV---SESRNIPYDKTLV-------- 206
             ++             ++               L+   S  R+                
Sbjct: 175 RIIQLYYDSMKLGLEGRLKEEGAEETHEAAEPTPLMSLLSSDRSWIDTINQKTLTHSLVD 234

Query: 207 --LSDGRIWTGAEAKKVGLIDVV 227
             +   + +   EA K+GL+D +
Sbjct: 235 TLIGLDQFFNADEALKLGLVDRI 257


>gi|260893129|ref|YP_003239226.1| peptidase S14 ClpP [Ammonifex degensii KC4]
 gi|260865270|gb|ACX52376.1| peptidase S14 ClpP [Ammonifex degensii KC4]
          Length = 234

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 65/190 (34%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + ++ ++  + +      ++V L++ GG   AG AI   +  +   KP ++ V     S 
Sbjct: 57  EHVLPQLVALEQHPEIEGILVILNTVGGDVEAGLAIAEMLASL--SKPTVSLVLGGGHSI 114

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  I+ A+      ET+                 +  + ++ + +         +     
Sbjct: 115 GVPIAVAARYSFITETA--------------SMTIHPIRLTGQVIGV-----PQTWEYLE 155

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             +   +   V  S    +       R+    +      G +  G EA   GLID VGG 
Sbjct: 156 KMQDRVIKFVVRHSRIEEWRFRELMFRSGELARD----IGTVLVGREAVDCGLIDEVGGV 211

Query: 231 EEVWQSLYAL 240
            +    L  L
Sbjct: 212 RKALAKLREL 221


>gi|226313002|ref|YP_002772896.1| translocation-enhancing protein [Brevibacillus brevis NBRC 100599]
 gi|226095950|dbj|BAH44392.1| translocation-enhancing protein [Brevibacillus brevis NBRC 100599]
          Length = 274

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 25/198 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + LI ++    +++    ++V L++ GG   AG AI   +  +                 
Sbjct: 98  EHLIPQLVAAEQNNKIEGVLVILNTVGGDVEAGLAIAEMVASLSKPV------------- 144

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++ GS   + +   +     +L   +  V  +    +      V
Sbjct: 145 -VTLVLGGGHSIGVPIAVAGSYSFIAETATMTIHPIRLTGLVIGVPQTFEYLDKMQDRVV 203

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
           +  A                R +                G    G +A K GLID VGG 
Sbjct: 204 SFIARHS------KVSEEKFRELMTRTGELTRDI-----GTNVIGVDAVKYGLIDEVGGL 252

Query: 231 EEVWQSLYALGVDQSIRK 248
               + L  L   Q   +
Sbjct: 253 GSALKKLNELIKAQKGEE 270


>gi|255595220|ref|XP_002536256.1| conserved hypothetical protein [Ricinus communis]
 gi|223520293|gb|EEF26129.1| conserved hypothetical protein [Ricinus communis]
          Length = 101

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 9/102 (8%)

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
           +V E R         +  G  WTG+   ++GLID +G   ++ Q L     D+    +  
Sbjct: 1   MVLERRTGKLSADETVFSGLFWTGSRGLELGLIDGLG---DMRQELRKRFGDKVKPMLI- 56

Query: 252 WNPPKNYWFCDLKNLSISSL--LEDTI--PLMKQTKVQGLWA 289
              P++ +      +S+ S+  L   +   L +  + + LW+
Sbjct: 57  -TTPRSLFGRKAPGISLGSMDGLGAGLASGLAEAAEERALWS 97


>gi|296330894|ref|ZP_06873369.1| protein export-enhancing factor [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674412|ref|YP_003866084.1| protein export-enhancing factor [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151899|gb|EFG92773.1| protein export-enhancing factor [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412656|gb|ADM37775.1| protein export-enhancing factor [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 245

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 67/198 (33%), Gaps = 25/198 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +      I      +   
Sbjct: 68  EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 127

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +SC  + I    T  +  + +      V    + L                    ++
Sbjct: 128 PIAVSCDYSYIAETATMTIHPVRLTGLVIGVPQTFEYLD-------------------KM 168

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + V+ +    + +   F  L+    N+  D       G    G +A + GLID VGG 
Sbjct: 169 QERVVKFVTSHSNVNEDKFKELMFSKGNLTRDI------GTNVVGKDAVEYGLIDHVGGV 222

Query: 231 EEVWQSLYALGVDQSIRK 248
            +    L  L  +    +
Sbjct: 223 GQAINKLNELIEEARAEE 240


>gi|269215646|ref|ZP_06159500.1| Clp protease [Slackia exigua ATCC 700122]
 gi|269131133|gb|EEZ62208.1| Clp protease [Slackia exigua ATCC 700122]
          Length = 255

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 62/197 (31%), Gaps = 31/197 (15%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + +   I+D     ++ ++  +   D    + + ++SPGGS  AG AI+ A+Q ++   
Sbjct: 82  IVFLGDAIDDGVANIVVAQLLHLESSDPEKDISLYINSPGGSVSAGLAIYDAMQFIRCDV 141

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      + ++    + A         S +     +          D   ++ +    
Sbjct: 142 STVCLGMAASMASVLTAAGAPGKRFVTPNSQIMIHQPMGGSGERTQQTDFDILANE---- 197

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +  +      L++       ++    S+   W T  
Sbjct: 198 ------------------------MRKTRDRLEGLLATHTGKTVEQIHADSERDHWLTAE 233

Query: 217 EAKKVGLIDVVGGQEEV 233
           EAK  GL+D +      
Sbjct: 234 EAKAYGLVDDIITSRAA 250


>gi|188585819|ref|YP_001917364.1| protein of unknown function DUF107 [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350506|gb|ACB84776.1| protein of unknown function DUF107 [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 458

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 88/276 (31%), Gaps = 36/276 (13%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSH------VEDNSPHVARIAIRGQIE-DSQELIER 56
           V K        + ++ +    F            +     V ++ + G IE      + R
Sbjct: 2   VRKNFNIFCSFICVLLIFSGLFIHFEEVQAQSLADTGEKTVYQVPVEGNIERGLSAFLNR 61

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116
               +++++A  +++ +++PGG+  A   I   I  V    PV   V+  A SAG  ++ 
Sbjct: 62  AFESAQEENADLIVLDINTPGGALDASFEIKDLI--VNEEIPVYAFVNSQAISAGSYLAL 119

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
           AS+ I    T  +G+             +                        ++    +
Sbjct: 120 ASDEIYMRPTGTMGAAEARMGTEVADEKV------------------------MSVWETE 155

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           M     +      +      R +  +  +  +     +  EAK+ G+ + +    +    
Sbjct: 156 MRTVAKERDRDPDIAAAMVRREMEIEGLVSENQLLTLSAEEAKEHGMAEGIVNNYD---E 212

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
           L      +    ++              + +++S+L
Sbjct: 213 LLEKTGYEGANIVEYPMEWAERMARFFTSPAVASIL 248


>gi|167948598|ref|ZP_02535672.1| signal peptide peptidase SppA, 36K type [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 144

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 30  HVEDNSPHVARIAIRGQIE-----DSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
            +  +  H A + + G I       + +++  +     D +   +I+ L++PGGS     
Sbjct: 46  KMAGSEKHTALVEVNGIIAPDTKASADKVVTGLRNAFEDKNTKGVILRLNTPGGSPVQSR 105

Query: 85  A 85
            
Sbjct: 106 L 106


>gi|298487182|ref|ZP_07005231.1| Peptidase, U7 family [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298158206|gb|EFH99277.1| Peptidase, U7 family [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 182

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 45/142 (31%), Gaps = 7/142 (4%)

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           +  +  + + +   K   + F E   K  +  Q  +D ++  F   V+  R  P      
Sbjct: 48  RHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASYR--PQLSIDE 105

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           ++ G IW G  A    L+D +   +E             +  +      +      +   
Sbjct: 106 VATGEIWLGMAAVDKLLVDELKTSDEYLAERAKDADVFHLHYV-----QRKSLQERMGMA 160

Query: 267 SISSLLEDTIPLMKQTKVQGLW 288
           + +S  +       +   Q  W
Sbjct: 161 AATSADQLAAKWWGRLTQQRFW 182


>gi|291522433|emb|CBK80726.1| Protease subunit of ATP-dependent Clp proteases [Coprococcus catus
           GD/7]
          Length = 233

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 65/223 (29%), Gaps = 37/223 (16%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
                   +  ++I G++E              + ++ ++           ++V L++ G
Sbjct: 27  KANAGKHRIFLLSIIGEVEGHEQSPGNVKTTKYEHVLPQLAMAEDSCDIDGILVLLNTMG 86

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G   AG AI   I  +      +      +      +S   + IV + T ++  + +   
Sbjct: 87  GDVEAGLAIAEMIASISKPTVSLVLGGSHSIGVPLAVSADYSFIVPSGTMIIHPVRMNGM 146

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
              V    +      + + +  +       S +    +   +   D              
Sbjct: 147 VIGVIQTYEYFERIQERILNFIVTNSRIAKSHLKKLMLDTSKLAKDV------------- 193

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                       G +  G E    GLID +GG  +    L  +
Sbjct: 194 ------------GTVLDGQETVDCGLIDAIGGISDALAKLNEM 224


>gi|332799236|ref|YP_004460735.1| peptidase S14 ClpP [Tepidanaerobacter sp. Re1]
 gi|332696971|gb|AEE91428.1| peptidase S14 ClpP [Tepidanaerobacter sp. Re1]
          Length = 240

 Score = 52.7 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 73/201 (36%), Gaps = 35/201 (17%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  I ++     L+V L++ GG   AG AI   I  V   KP ++ V     S 
Sbjct: 70  EHIIPQLIAIEQNPKIKGLLVILNTVGGDVEAGLAIAEMI--VGMTKPTVSLVLGGGHSI 127

Query: 111 GYLISCASNIIVAAETSLVGSIGVL-----FQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           G  I+ AS+    AET+ +    +         P    +LDK+   +        K    
Sbjct: 128 GVPIAVASDYSFIAETATMTIHPIRLTGLVIGVPQTYEYLDKMQDRVIKFIVEHSKIGEE 187

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
            F E+                         +R+I          G +  G++A K GLID
Sbjct: 188 SFREL------------------MFSTGKLARDI----------GTVLVGSDAVKCGLID 219

Query: 226 VVGGQEEVWQSLYALGVDQSI 246
            VGG     + L  +    + 
Sbjct: 220 EVGGIGAAIKKLEEIIKLVNN 240


>gi|254298353|ref|ZP_04965805.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 406e]
 gi|157808321|gb|EDO85491.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 406e]
          Length = 366

 Score = 52.7 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 80/218 (36%), Gaps = 43/218 (19%)

Query: 30  HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
             +     VA I I   I     D+Q  + +++ ++ D  A+++ V+++S GG  +   A
Sbjct: 13  QAQAGGGKVAEIRIYSDIGFWGTDAQNFVSQLDVVAAD--ASSITVAINSMGGDVFDAFA 70

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I+ A+++   +      V  +AASA  L+  A + I   E +L+                
Sbjct: 71  IYNALRRHAGKVK--GRVDGIAASAASLVLMACDEIEMPENALLMIHH------------ 116

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
                   +V +   K        ++            ++    +   ++   +  D   
Sbjct: 117 ------PHTVAAGESKDLRRVAELLD------------NASAGILAAYAQRSGLSEDDVR 158

Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
            + D   W T A+AK+ G  DV+    E    L A   
Sbjct: 159 AMMDAETWLTAAQAKEKGFCDVI----EAPVKLAASAG 192


>gi|225018528|ref|ZP_03707720.1| hypothetical protein CLOSTMETH_02475 [Clostridium methylpentosum
           DSM 5476]
 gi|224948729|gb|EEG29938.1| hypothetical protein CLOSTMETH_02475 [Clostridium methylpentosum
           DSM 5476]
          Length = 262

 Score = 52.7 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 67/198 (33%), Gaps = 25/198 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I  +  I +      L+V L++ GG   AG AI   I  +   KP ++ V     S 
Sbjct: 75  EHVIPALVAIEQSPDIKGLVVILNTVGGDVEAGLAIAELIAGI--NKPTVSLVLGGGHSI 132

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  ++ ++       ++ +    V                    +     +         
Sbjct: 133 GVPLAVSAKKSFIVPSASMTVHPVRMS----------------GLVLGVPQTLSYFDRMQ 176

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                 +  +    +  +   +++          LV+  G +  G +A + GLID +GG 
Sbjct: 177 ERIVRFVTDNSNIEADRFKQLMMTTG-------ELVMDVGTVLDGQKAVEEGLIDSMGGI 229

Query: 231 EEVWQSLYALGVDQSIRK 248
            +    L  +  ++  ++
Sbjct: 230 SDAIACLNEMIDEEEAKR 247


>gi|52080286|ref|YP_079077.1| translocation-enhancing protein [Bacillus licheniformis ATCC 14580]
 gi|52785663|ref|YP_091492.1| TepA [Bacillus licheniformis ATCC 14580]
 gi|319645933|ref|ZP_08000163.1| TepA protein [Bacillus sp. BT1B_CT2]
 gi|52003497|gb|AAU23439.1| translocation-enhancing protein [Bacillus licheniformis ATCC 14580]
 gi|52348165|gb|AAU40799.1| TepA [Bacillus licheniformis ATCC 14580]
 gi|317391683|gb|EFV72480.1| TepA protein [Bacillus sp. BT1B_CT2]
          Length = 248

 Score = 52.7 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 64/190 (33%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  + ++     L++ L++ GG   AG AI   +  +      I      +   
Sbjct: 71  EHVIPQIVAVEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 130

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +SC  + I    T  +  + +      V    + L                    ++
Sbjct: 131 PIAVSCDHSYIAETATMTIHPVRLTGLVIGVPQTFEYLD-------------------KM 171

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + +  +    + S   F  L+    N+  D       G    G +A K GLID  GG 
Sbjct: 172 QERVINFVTSHSNISEEKFKELMFSKGNLTRDI------GTNVVGNDAVKYGLIDETGGV 225

Query: 231 EEVWQSLYAL 240
            +  Q L  L
Sbjct: 226 GQAIQKLNEL 235


>gi|154686096|ref|YP_001421257.1| TepA [Bacillus amyloliquefaciens FZB42]
 gi|154351947|gb|ABS74026.1| TepA [Bacillus amyloliquefaciens FZB42]
          Length = 245

 Score = 52.7 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 25/198 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +      I      +   
Sbjct: 68  EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 127

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +SC  + I    T  +  + +      V    + L                    ++
Sbjct: 128 PIAVSCDHSFIAETATMTIHPVRLTGLVIGVPQTFEYLD-------------------KM 168

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + V  +    + S   F  L+    N+  D       G    G +A   GLID VGG 
Sbjct: 169 QERVVNFVTHHSNISEEKFKELMFSKGNLTRDI------GTNVVGKDAADYGLIDAVGGV 222

Query: 231 EEVWQSLYALGVDQSIRK 248
            +  + L  L  ++   +
Sbjct: 223 GQAIKKLNQLIEERKGEE 240


>gi|323144789|ref|ZP_08079363.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Succinatimonas hippei YIT 12066]
 gi|322415435|gb|EFY06195.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Succinatimonas hippei YIT 12066]
          Length = 200

 Score = 52.7 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 63/198 (31%), Gaps = 33/198 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED  +  ++ ++  +  DD    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 31  VIFMTGEVEDHMADLIVAQLLFLESDDPDKDIYLYINSPGGVVTAGMAIYDTMQYIKPDV 90

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L   A     A   S +     L  +      +       + V  
Sbjct: 91  CTLCMGQACSMGSFLLAGGAPGKRFALPHSRIMIHQPLGGFKGQASDIMIHARETERV-- 148

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                             L+++      D+ +   D   + +  
Sbjct: 149 ----------------------------KRTLTELLAKHTGKSVDEVMQDCDRDNFMSAE 180

Query: 217 EAKKVGLIDVVGGQEEVW 234
           EA   GLID V    +  
Sbjct: 181 EALAYGLIDRVITSRDEI 198


>gi|121607361|ref|YP_995168.1| endopeptidase Clp [Verminephrobacter eiseniae EF01-2]
 gi|121552001|gb|ABM56150.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Verminephrobacter eiseniae EF01-2]
          Length = 229

 Score = 52.7 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 73/202 (36%), Gaps = 4/202 (1%)

Query: 41  IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
           + I G I+   ++E ++++  ++  +    + V +SSPGG   +G+ IF AI+ +  +  
Sbjct: 29  VFIIGTIDHKMAKEAVQQLHILASIND-DPIYVFISSPGGHVESGDLIFDAIRFITPKVI 87

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
           V++     +A A   ++       +   +                + +         + +
Sbjct: 88  VVSSGWVASAGALIYVAADKENRYSLPNTHFLLHMKEIIPAGEMTYTETADDRAARERFA 147

Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAE 217
              +         P    + +   +       R+ +E+     +K    +    W +  +
Sbjct: 148 QFVSSSYRKKPPEPVNKSLHEYRTNVMRARLNRIFAEATGQTLEKITADTGHDFWMSAEQ 207

Query: 218 AKKVGLIDVVGGQEEVWQSLYA 239
           A + GL+  +   E+  +S   
Sbjct: 208 AVEYGLVHEIIVSEKEIRSQKK 229


>gi|308173642|ref|YP_003920347.1| protein export-enhancing factor [Bacillus amyloliquefaciens DSM 7]
 gi|307606506|emb|CBI42877.1| protein export-enhancing factor [Bacillus amyloliquefaciens DSM 7]
 gi|328553426|gb|AEB23918.1| protein export-enhancing factor [Bacillus amyloliquefaciens TA208]
          Length = 245

 Score = 52.3 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 25/198 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +      I      +   
Sbjct: 68  EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 127

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +SC  + I    T  +  + +      V    + L                    ++
Sbjct: 128 PIAVSCDHSFIAETATMTIHPVRLTGLVIGVPQTFEYLD-------------------KM 168

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + V  + +  + S   F  L+    N+  D       G    G +A   GLID VGG 
Sbjct: 169 QERVVNFVTNHSNISEEKFKELMFSKGNLTRDI------GTNVVGKDAADYGLIDAVGGV 222

Query: 231 EEVWQSLYALGVDQSIRK 248
            +  + L  L  ++   +
Sbjct: 223 GQAIKKLNQLIEERKGEE 240


>gi|307258170|ref|ZP_07539920.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306863355|gb|EFM95288.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 675

 Score = 52.3 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 68/216 (31%), Gaps = 39/216 (18%)

Query: 30  HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
            ++  S + A I+I  +I      +Q+    ++ +    +   + + + SPGGS + G A
Sbjct: 16  DIKAKSNNQAEISIYDEIGGWGVSAQQFATDLKALGS--NIKQIDLHIHSPGGSVFDGIA 73

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           IF  ++     K     +  +AAS   +I+   N ++  E +++                
Sbjct: 74  IFNLLKNHPANKT--VYIDGLAASMASVIAMVGNKVIMPENAMMMIH------------- 118

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
                    ++             ++                  +   +       ++  
Sbjct: 119 -----KPWGIQGGDADDMRKYADLLDKLE------------ATLIPAYASKTGKTEEELA 161

Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYAL 240
            +     W  G EA + G  D +    +    + + 
Sbjct: 162 QMLAVETWMNGKEAVEQGFADELAEPVQAMAQIQSK 197


>gi|261419480|ref|YP_003253162.1| peptidase S14 ClpP [Geobacillus sp. Y412MC61]
 gi|319766296|ref|YP_004131797.1| peptidase S14 ClpP [Geobacillus sp. Y412MC52]
 gi|261375937|gb|ACX78680.1| peptidase S14 ClpP [Geobacillus sp. Y412MC61]
 gi|317111162|gb|ADU93654.1| peptidase S14 ClpP [Geobacillus sp. Y412MC52]
          Length = 246

 Score = 52.3 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 59/206 (28%), Gaps = 33/206 (16%)

Query: 43  IRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           I G I           + +I +I  I ++     L+V L++ GG   AG AI   +  + 
Sbjct: 53  IEGHIQLPPQNKATKYEHVIPQIVAIEQNPKIEGLLVILNTVGGDVEAGLAIAEMLASLS 112

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
                +      +      +SC  + I    T  +  I +      V    + L    + 
Sbjct: 113 KPTVSVVLGGGHSIGVPIAVSCNYSFITETATMTIHPIRLTGLVIGVPQTFEYLDKMQER 172

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
           V     K       +             D                          G    
Sbjct: 173 VVRFVTKHSKISEEKFKELMFSKGNLTRDI-------------------------GTNVV 207

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYAL 240
           G +A + GLID VGG  +    L  L
Sbjct: 208 GPDAVRYGLIDEVGGVSQAMVKLREL 233


>gi|167725633|ref|ZP_02408869.1| peptidase S14, ClpP [Burkholderia pseudomallei DM98]
          Length = 366

 Score = 52.3 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 78/205 (38%), Gaps = 39/205 (19%)

Query: 30  HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
             +  S  VA I I   I     D+Q  + +++ ++ D  A+++ V+++S GG  +   A
Sbjct: 13  QAQAGSGKVAEIRIYSDIGFWGTDAQNFVSQLDAVAAD--ASSITVAINSMGGDVFDAFA 70

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I+ A+++   +      V  +AASA  L+  A + I   E +L+                
Sbjct: 71  IYNALRRYAGKVK--GRVDGIAASAASLVLMACDEIEMPENALLMIHH------------ 116

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
                   +V +   K        ++            ++    +   ++   +  D   
Sbjct: 117 ------PHTVAAGESKDLRRVAELLD------------NASAGILAAYAQRSGLSEDDVR 158

Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGG 229
            + D   W T A+AK+ G  DV+  
Sbjct: 159 AMMDAETWLTAAQAKEKGFCDVIET 183


>gi|167744552|ref|ZP_02417326.1| peptidase S14, ClpP [Burkholderia pseudomallei 14]
          Length = 366

 Score = 52.3 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 80/218 (36%), Gaps = 43/218 (19%)

Query: 30  HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
             +     VA I I   I     D+Q  + +++ ++ D  A+++ V+++S GG  +   A
Sbjct: 13  QAQAGGGKVAEIRIYSDIGFWGTDAQNFVSQLDAVAAD--ASSITVAINSMGGDVFDAFA 70

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I+ A+++   +      V  +AASA  L+  A + I   E +L+                
Sbjct: 71  IYNALRRYAGKVK--GRVDGIAASAASLVLMACDEIEMPENALLMIHH------------ 116

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
                   +V +   K        ++            ++    +   ++   +  D   
Sbjct: 117 ------PHTVAAGESKDLRRVAELLD------------NASAGILAAYAQRSGLSEDDVR 158

Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
            + D   W T A+AK+ G  DV+    E    L A   
Sbjct: 159 AMMDAETWLTAAQAKEKGFCDVI----EAPVKLAASAG 192


>gi|150390788|ref|YP_001320837.1| hypothetical protein Amet_3038 [Alkaliphilus metalliredigens QYMF]
 gi|149950650|gb|ABR49178.1| protein of unknown function DUF107 [Alkaliphilus metalliredigens
           QYMF]
          Length = 432

 Score = 52.3 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 107/279 (38%), Gaps = 43/279 (15%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISR 62
           ++K +   + + L+   ++     +        V  I I G+I  +  Q +++ ++   +
Sbjct: 1   MRKRERFLIAILLIFAGLIM---HTTAAPQEKIVYVIPIHGEIGPAVYQYMLDNLKVAEQ 57

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           D +  A++  + + GG   + E +   I+   +  P I+ V+  A SAG L++ +++ + 
Sbjct: 58  DPNTVAVVFEIDTYGGRVDSAERMSYYIR--NSSVPTISFVNTKAESAGVLLTISADQVA 115

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
            A+ S +GS   +   P  +  L      +++V     + +                   
Sbjct: 116 MAQGSTIGSAEPI---PNTEKSLSYWVSELRTVAQQKGRDD------------------- 153

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRI--WTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                   +LV+   +       V+  GR+   T  EA K+GL D+V    +    L  L
Sbjct: 154 --------QLVAAMADESIAIENVIESGRLLNLTNQEALKLGLADLVA--ADTLAVLEGL 203

Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279
            V     +I +           L   S+ + +  T+  +
Sbjct: 204 NV--EYTQIINTPMSARVRTAQLATSSVVTPILLTLGFV 240


>gi|291615232|ref|YP_003525389.1| hypothetical protein Slit_2777 [Sideroxydans lithotrophicus ES-1]
 gi|291585344|gb|ADE13002.1| protein of unknown function DUF107 [Sideroxydans lithotrophicus
           ES-1]
          Length = 463

 Score = 52.3 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 104/288 (36%), Gaps = 19/288 (6%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSS 75
           +   ++  +W+     + P V  + + G I    +  ++  +   + D SA  +++ + +
Sbjct: 7   LLSGLILATWAGCAMASGPVVVVLDVDGAISPGTADYVVRGMRSAA-DQSAQLIVLKMDT 65

Query: 76  PGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           PGG      + I + I         +      AASAG  I  AS+I   A  + +G+   
Sbjct: 66  PGGLDTSMRQIIKQIIASPIPVAAFVAPNGARAASAGTYILYASHIAAMAPATNLGAATP 125

Query: 135 LFQYPYVKPFLDKLGVSI-KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           +          D+       + +     A P+P     P      + V D+S +      
Sbjct: 126 VMIGLGGVGTGDQPQKEDKDNTQEKDAGANPAPAKTAAPLTALEHKQVNDASAYIRSLAQ 185

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSL---------YALGVD 243
              RN+ + +   +      T AEA K+ +IDV+     ++ + L             +D
Sbjct: 186 MRGRNVQWAE-QAVRQAVSLTAAEALKLKVIDVIAADVPDLLRQLDGRKVNVLGAERTLD 244

Query: 244 QSIRKIKDWNP-PKNYWFCDLKNLSISSL--LEDTIPLMKQTKVQGLW 288
            +  +I    P  ++     + + SI+ L  L     +  +    G  
Sbjct: 245 VAGARIVALEPDWRSRLLSVIADPSIAYLLMLAGVFGIFFEFSNPGFV 292


>gi|167619474|ref|ZP_02388105.1| peptidase S14, ClpP [Burkholderia thailandensis Bt4]
          Length = 366

 Score = 52.3 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 80/218 (36%), Gaps = 43/218 (19%)

Query: 30  HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
             +     VA I I   I     D+Q  + +++ ++ D  A+++ V+++S GG  +   A
Sbjct: 13  QAQVGGGKVAEIRIYSDIGFWGTDAQNFVSQLDAVAAD--ASSITVAINSMGGDVFDAFA 70

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I+ A+++   +      V  +AASA  L+  A + I   E +L+                
Sbjct: 71  IYNALRRYAGKVK--GRVDGIAASAASLVLMACDEIEMPENALLMIHH------------ 116

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
                   +V +   K        ++            ++    +   ++   +  D   
Sbjct: 117 ------PHTVAAGESKDLRRVAELLD------------NASAGILAAYAQRSGLSEDDVR 158

Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
            + D   W T A+AK+ G  DV+    E    L A   
Sbjct: 159 AMMDAETWLTAAQAKEKGFCDVI----EAPVKLAASAG 192


>gi|328911782|gb|AEB63378.1| protein export-enhancing factor [Bacillus amyloliquefaciens LL3]
          Length = 249

 Score = 52.3 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 25/198 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +      I      +   
Sbjct: 72  EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 131

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +SC  + I    T  +  + +      V    + L                    ++
Sbjct: 132 PIAVSCDHSFIAETATMTIHPVRLTGLVIGVPQTFEYLD-------------------KM 172

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + V  + +  + S   F  L+    N+  D       G    G +A   GLID VGG 
Sbjct: 173 QERVVNFVTNHSNISEEKFKELMFSKGNLTRDI------GTNVVGKDAADYGLIDAVGGV 226

Query: 231 EEVWQSLYALGVDQSIRK 248
            +  + L  L  ++   +
Sbjct: 227 GQAIKKLNQLIEERKGEE 244


>gi|254520131|ref|ZP_05132187.1| endopeptidase Clp [Clostridium sp. 7_2_43FAA]
 gi|226913880|gb|EEH99081.1| endopeptidase Clp [Clostridium sp. 7_2_43FAA]
          Length = 198

 Score = 52.3 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D+    ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IIMLSGEINDTTSNLVVSQLLFLESEDPDKDIHLYINSPGGSITAGMAIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L S A         S +     L  +       D     I  +  
Sbjct: 89  STICIGMAASMGSFLLSSGAKGKRFVLPNSEIMIHQPLGGFQGQATDFDIHARRIIKI-- 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                            R++SE+ N P +K    +      T  
Sbjct: 147 ----------------------------KESLNRILSENTNQPLEKIKTDVERDYFMTAE 178

Query: 217 EAKKVGLIDVVGGQEE 232
           EA   GL+D V  + +
Sbjct: 179 EAMNYGLVDKVITKND 194


>gi|213621365|ref|ZP_03374148.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 107

 Score = 52.3 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 2/97 (2%)

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
            FL    + I+   +   K   +   E   +  Q  ++ ++ ++H F   V   R  P  
Sbjct: 1   RFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMR--PAL 58

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
               ++ G  W G +A + GL+D +   +EV   L  
Sbjct: 59  DIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLME 95


>gi|167824886|ref|ZP_02456357.1| peptidase S14, ClpP [Burkholderia pseudomallei 9]
 gi|226198878|ref|ZP_03794441.1| peptidase S14, ClpP [Burkholderia pseudomallei Pakistan 9]
 gi|225928978|gb|EEH25002.1| peptidase S14, ClpP [Burkholderia pseudomallei Pakistan 9]
          Length = 364

 Score = 52.3 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 81/221 (36%), Gaps = 43/221 (19%)

Query: 27  WSSHVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
           W    +     VA I I   I     D+Q  + +++ ++ D  A+++ V+++S GG  + 
Sbjct: 8   WDIRAQAGGGKVAEIRIYSDIGFWGTDAQNFVSQLDAVAAD--ASSITVAINSMGGDVFD 65

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
             AI+ A+++   +      V  +AASA  L+  A + I   E +L+             
Sbjct: 66  AFAIYNALRRYAGKVK--GRVDGIAASAASLVLMACDEIEMPENALLMIHH--------- 114

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                      +V +   K        ++            ++    +   ++   +  D
Sbjct: 115 ---------PHTVAAGESKDLRRVAELLD------------NASAGILAAYAQRSGLSED 153

Query: 203 KTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
               + D   W T A+AK+ G  DV+    E    L A   
Sbjct: 154 DVRAMMDAETWLTAAQAKEKGFCDVI----EAPVKLAASAG 190


>gi|295105822|emb|CBL03365.1| ATP-dependent Clp protease proteolytic subunit ClpP [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 211

 Score = 52.3 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 61/205 (29%), Gaps = 33/205 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  QI+D  +  ++ ++  +   D    + + ++SPGGS  AG AI   +  +K   
Sbjct: 35  VIFLGEQIDDNVANSVVAQLLHLESADPEKDISLYINSPGGSVTAGLAILDTMDFIKCDV 94

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L + A    +    S+V            +  +  +         
Sbjct: 95  STICLGECASMAAVLLSNGAKGKRMCLPNSMVLIHQPSGGAQGQQTEIAIVAD------- 147

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +  + +   ++++++     +            T  
Sbjct: 148 -----------------------FMLKTRNRLNKILADNTGQTLETIQADTERDNYMTAE 184

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALG 241
           EA   GL+D +              
Sbjct: 185 EALAYGLVDRITTSRAAAADTEEKK 209


>gi|167814835|ref|ZP_02446515.1| peptidase S14, ClpP [Burkholderia pseudomallei 91]
 gi|167911620|ref|ZP_02498711.1| peptidase S14, ClpP [Burkholderia pseudomallei 112]
          Length = 366

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 80/218 (36%), Gaps = 43/218 (19%)

Query: 30  HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
             +     VA I I   I     D+Q  + +++ ++ D  A+++ V+++S GG  +   A
Sbjct: 13  QAQAGGGKVAEIRIYSDIGFWGTDAQNFVSQLDAVAAD--ASSITVAINSMGGDVFDAFA 70

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I+ A+++   +      V  +AASA  L+  A + I   E +L+                
Sbjct: 71  IYNALRRYAGKVK--GRVDGIAASAASLVLMACDEIEMPENALLMIHH------------ 116

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
                   +V +   K        ++            ++    +   ++   +  D   
Sbjct: 117 ------PHTVAAGESKDLRRVAELLD------------NASAGILAAYAQRSGLSEDDVR 158

Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
            + D   W T A+AK+ G  DV+    E    L A   
Sbjct: 159 AMMDAETWLTAAQAKEKGFCDVI----EAPVKLAASAG 192


>gi|134277934|ref|ZP_01764649.1| Clp protease domain protein [Burkholderia pseudomallei 305]
 gi|134251584|gb|EBA51663.1| Clp protease domain protein [Burkholderia pseudomallei 305]
          Length = 359

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 80/218 (36%), Gaps = 43/218 (19%)

Query: 30  HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
             +     VA I I   I     D+Q  + +++ ++ D  A+++ V+++S GG  +   A
Sbjct: 13  QAQAGGGKVAEIRIYSDIGFWGTDAQNFVSQLDAVAAD--ASSITVAINSMGGDVFDAFA 70

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I+ A+++   +      V  +AASA  L+  A + I   E +L+                
Sbjct: 71  IYNALRRYAGKVK--GRVDGIAASAASLVLMACDEIEMPENALLMIHH------------ 116

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
                   +V +   K        ++            ++    +   ++   +  D   
Sbjct: 117 ------PHTVAAGESKDLRRVAELLD------------NASAGILAAYAQRSGLSEDDVR 158

Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
            + D   W T A+AK+ G  DV+    E    L A   
Sbjct: 159 AMMDAETWLTAAQAKEKGFCDVI----EAPVKLAASAG 192


>gi|169829216|ref|YP_001699374.1| phage protein [Lysinibacillus sphaericus C3-41]
 gi|168993704|gb|ACA41244.1| phage protein [Lysinibacillus sphaericus C3-41]
          Length = 355

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 74/212 (34%), Gaps = 50/212 (23%)

Query: 39  ARIAIRGQIEDS----------------QELIERIERISRDDSATALIVSLSSPGGSAYA 82
           ARI IRG I                   + ++++I+R   +     L+V+++SPGGS YA
Sbjct: 2   ARIDIRGAIVPDGEQWIYDWYGIPAVSPKRIMQQIDRAINNQE-KELVVNINSPGGSVYA 60

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
              I+  I+K       ++E+  + ASA  +I+ AS  +V A    +             
Sbjct: 61  ASEIWTHIKKYP--GNSVSEISGVCASAASIIALASKKVVIAPVGALMIHNAS------- 111

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                       +     +   S    +              +    ++   E      +
Sbjct: 112 -----------VIAEGDYREMESMKQLL------------IQTNDAIMQTYKEKTKKSDE 148

Query: 203 KTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEV 233
           +   + D   W    +A + G +D +   EE+
Sbjct: 149 ELKQMMDAETWMNAQQAVENGFVDEIMFAEEM 180


>gi|32476642|ref|NP_869636.1| ATP-dependent Clp protease proteolytic subunit [Rhodopirellula
           baltica SH 1]
 gi|67460513|sp|Q7UK67|CLPP1_RHOBA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|32447188|emb|CAD77014.1| ATP-dependent clp protease proteolytic subunit [Rhodopirellula
           baltica SH 1]
          Length = 227

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + ++G+I   ++ E++ ++  +  ++    + + ++SPGGS  A  AI+  +Q +    
Sbjct: 55  IVFMQGEIHYANANEIVMKLLYLQSENRRKDIHLYINSPGGSVTATLAIYDTMQMLSCPV 114

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    + +A  LI  A         S V     L         ++     +     
Sbjct: 115 ATYCVGEACSGAAVLLIGGAKGKRFCLPNSRVMMHQPLGGVSGQVSDIEIQAAEM----- 169

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
                                             ++S       ++    +D   +    
Sbjct: 170 -------------------------FRYRDKLNEIISSHCGKSVEQIAKDTDRDFFLDAQ 204

Query: 217 EAKKVGLIDVV 227
           +AK+ GL+D +
Sbjct: 205 QAKEYGLVDDL 215


>gi|304404310|ref|ZP_07385972.1| peptidase S14 ClpP [Paenibacillus curdlanolyticus YK9]
 gi|304347288|gb|EFM13120.1| peptidase S14 ClpP [Paenibacillus curdlanolyticus YK9]
          Length = 249

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 25/187 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + LI ++    ++     +++ L++ GG   AG AI   I  +      +          
Sbjct: 71  EHLIPQLVAAEQNPKIEGILIVLNTVGGDVEAGLAIAEMISSLTKPTVTL---------- 120

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
                     ++    S+   I V           +   ++I  ++ + +        E 
Sbjct: 121 ----------VLGGGHSIGVPIAVSANR---SFIAESATMTIHPIRLNGLVIGVPQTFEY 167

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             K  + +   V S  +   +L  E      + T  +  G    GA+A K GLID VGG 
Sbjct: 168 LDKMQERVVRFVTSHSNISEQLFKELMFKTGELTRDI--GTTVIGADAVKHGLIDAVGGI 225

Query: 231 EEVWQSL 237
            +   +L
Sbjct: 226 GDALIAL 232


>gi|319649503|ref|ZP_08003659.1| TepA protein [Bacillus sp. 2_A_57_CT2]
 gi|317398665|gb|EFV79347.1| TepA protein [Bacillus sp. 2_A_57_CT2]
          Length = 246

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 25/198 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + LI +I  I ++     L+V L++ GG   AG AI   +  +      I          
Sbjct: 69  EHLIPQIVAIEQNPKIEGLLVILNTVGGDVEAGLAISEMLASLSKPTVSI---------- 118

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
                      +    ++      + +   +     +L   +  V             ++
Sbjct: 119 ----VLGGGHSIGVPIAVSCDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYMDKM 169

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + +  +    + S   F  L+ +  N+  D       G    G +A + GLID VGG 
Sbjct: 170 QDRVINFVTKHSNISEQKFKDLMFDKGNLTRDI------GTNVVGRDAVEYGLIDEVGGV 223

Query: 231 EEVWQSLYALGVDQSIRK 248
                 L  L      ++
Sbjct: 224 GPALAKLNELIDMNKPKE 241


>gi|160880890|ref|YP_001559858.1| peptidase S14 ClpP [Clostridium phytofermentans ISDg]
 gi|160429556|gb|ABX43119.1| peptidase S14 ClpP [Clostridium phytofermentans ISDg]
          Length = 316

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 37/231 (16%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
                +  +  ++I G+IE              + ++ ++  I  D     L++ +++ G
Sbjct: 111 EDNGKNHKIHLLSIIGEIEGHECLSQNAKTTKYEHVLPQLATIEDDTETDGLLILINTVG 170

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G    G A+   I  +      +      +      ++   + IV   T +V  + +   
Sbjct: 171 GDVSCGLALAEMIASLSKPTVSLVIGDSHSIGVPLAVATNYSFIVPTGTMIVHPVRMSGM 230

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
                   D   +    +                                  +  +  + 
Sbjct: 231 VIGAPQTYDYFKLIQDRIV--------------------GFVSSHSKIKKEKLEQLMLNT 270

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            +          G I  G EA   G+I+ VGG ++  + L+ +  +++  +
Sbjct: 271 GMLSKDL-----GTILVGDEAVAEGIINEVGGIKQAIEKLHQMIEEKNSNR 316


>gi|330948557|gb|EGH48817.1| peptidase S49, SppA [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 75

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 8/83 (9%)

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             L  G IWTG +A  +GL+D +G    V + +         + I ++   ++ +    K
Sbjct: 1   PELFSGLIWTGEQAVALGLVDGLGSASYVARDVIK------EKDIVEYTVEESPFDRFSK 54

Query: 265 NLSISSLLEDTIPLMKQTKVQGL 287
            L  S  + + I ++       L
Sbjct: 55  KLGTS--IAERIAMLVGFNGPSL 75


>gi|323701887|ref|ZP_08113557.1| peptidase S14 ClpP [Desulfotomaculum nigrificans DSM 574]
 gi|323533191|gb|EGB23060.1| peptidase S14 ClpP [Desulfotomaculum nigrificans DSM 574]
          Length = 272

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 72/214 (33%), Gaps = 33/214 (15%)

Query: 43  IRGQIE--------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           I G I           + +I ++  I + +    +++ L++ GG   AG AI   I    
Sbjct: 79  IEGHIMLPSQNKTTKYEHIIPQLVGIEQAEDIEGVLLILNTVGGDVEAGLAIAEVIA--T 136

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
             KP ++ V     S G  I+ +SN    A T+ +    +          L+ L + +  
Sbjct: 137 MTKPTVSLVLGGGHSIGVPIAVSSNYSFIAPTASMTIHPIR---------LNGLVIGVPQ 187

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
                 K +      V   +    Q   D  +                       G +  
Sbjct: 188 TYDYLDKMQDRVIRFVTEHSKISEQKFRDLMFKTGELAR--------------DIGTVVI 233

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           G +A + GLID VGG  +    L  +  ++   K
Sbjct: 234 GKDAVEYGLIDEVGGIGKALAKLKQMIEERKTTK 267


>gi|260906247|ref|ZP_05914569.1| ATP-dependent Clp protease proteolytic subunit [Brevibacterium
           linens BL2]
          Length = 210

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 52/187 (27%), Gaps = 27/187 (14%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    + + ++SPGGS  A  AI+  +Q +K     +      +
Sbjct: 51  TSADDVMAQLLVLESQDPDRDITLYINSPGGSFTAMTAIYDTMQYIKPEIQTVCLGQAAS 110

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L +      +A   + V       +        D    + +  +           
Sbjct: 111 AAAVLLAAGTPGKRLALPNARVLIHQPAMEGQGQGQASDIEIQAAEVFRMRQWLETTLSD 170

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
                                                  +      T  +AK  GL+D V
Sbjct: 171 HSNKSPEQVS---------------------------NDIERDLFLTAEQAKDYGLVDQV 203

Query: 228 GGQEEVW 234
               +  
Sbjct: 204 LTSRKAV 210


>gi|118382549|ref|XP_001024432.1| peptidase, S49 (protease IV) family protein [Tetrahymena
           thermophila]
 gi|89306199|gb|EAS04187.1| peptidase, S49 (protease IV) family protein [Tetrahymena
           thermophila SB210]
          Length = 184

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 8/152 (5%)

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           +    PV T   +M  ++  LI  + N + A + SL+G  G  +Q    K  L+   V  
Sbjct: 1   MIKSAPVYTFAEDMVLNSANLILSSGNKVFAGKYSLLGDFGYSYQGFGYKGLLENYNVKA 60

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL------- 205
           + V +   K + +PF ++  +  Q M++ +  S +     V ++R   +           
Sbjct: 61  EFVHAGEKKVKLNPFQDLKQEDAQWMKNYLLESEYDLKSSVIQTRAQKFHDLKLSNEQVN 120

Query: 206 -VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
             L +  +    +AK++GLID +   EE+   
Sbjct: 121 KELLEKGMIEAEQAKQIGLIDGIKTFEELAHE 152


>gi|294677522|ref|YP_003578137.1| S49 family peptidase [Rhodobacter capsulatus SB 1003]
 gi|3128372|gb|AAC16224.1| potential peptidase [Rhodobacter capsulatus SB 1003]
 gi|294476342|gb|ADE85730.1| peptidase, S49 family [Rhodobacter capsulatus SB 1003]
          Length = 303

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 10/179 (5%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           ++V   +PGG     E    A++ +   KPV      +AASAGY ++  +  +V    + 
Sbjct: 100 VVVEFDTPGGYTLGIEDAVTALRDLAAVKPVHALAAPLAASAGYWLASQARELVMTPRAA 159

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
           VGS  +                 ++    +   A               ++  +D +   
Sbjct: 160 VGS--IGVAVTAAANVAPGAASGVQLFDFTSRHARAKWPDPATEDGKAEIRRGLDRTEAR 217

Query: 189 FVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
           F   V+E R I  +               G ++  AEA   GL D +  +   +  L A
Sbjct: 218 FHAAVAEGRGIAPEDLAARLSVSDDPEDGGAVFEAAEALARGLADRIETRAAFYARLRA 276


>gi|331084073|ref|ZP_08333180.1| hypothetical protein HMPREF0992_02104 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402435|gb|EGG82005.1| hypothetical protein HMPREF0992_02104 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 234

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 37/231 (16%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
              +   H+  ++I G++E              + ++ ++  I        L++ L++ G
Sbjct: 28  EENEKEYHIQLLSIIGEVEGHECLPNNSKTTKYEHVLPKLAMIEDSKETDGLLILLNTVG 87

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G   AG AI   I  +      +      +      +S   + IV + T ++  +     
Sbjct: 88  GDVEAGLAIAEMIASLSKPTVSLVLGGGHSIGVPMAVSADYSYIVPSATMVIHPVRSNGM 147

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +  V      +      +          P   +    +   Q V D              
Sbjct: 148 FIGVMQTYRNMEKIQDRITRFIASHSKMPQKRIEQLMLDTSQLVKDV------------- 194

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                       G +  G EA K GLID  GG  +    LY L   +  +K
Sbjct: 195 ------------GTMLEGEEAVKEGLIDETGGICQALHKLYELIEKEKAQK 233


>gi|322378952|ref|ZP_08053366.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter suis
           HS1]
 gi|322379806|ref|ZP_08054103.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter suis
           HS5]
 gi|321147774|gb|EFX42377.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter suis
           HS5]
 gi|321148628|gb|EFX43114.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter suis
           HS1]
          Length = 197

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I D+    ++ ++  +  +D    + + ++SPGGS  +G +I+  +  +    
Sbjct: 29  IVLLSGEINDAVASTIVAQLLFLEAEDPEKDINLYINSPGGSVTSGLSIYDTMNYIHPDI 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L         +   + +     L         +            
Sbjct: 89  CTICIGQAASMGAFLLSCGTKGKRFSLPHARIMIHQPLGGTEGQATNIAIYTKE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +    +   ++++E+     +K    SD   + +  
Sbjct: 143 ------------------------ILRLKNTLNQIMAENTGQTLEKIEQDSDRDFFMSAE 178

Query: 217 EAKKVGLIDVV 227
           +AK+ GL+D V
Sbjct: 179 DAKEYGLVDAV 189


>gi|311068202|ref|YP_003973125.1| TepA protein [Bacillus atrophaeus 1942]
 gi|310868719|gb|ADP32194.1| TepA [Bacillus atrophaeus 1942]
          Length = 245

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 67/198 (33%), Gaps = 25/198 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +      I      +   
Sbjct: 68  EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 127

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +SC  + I    T  +  + +      V    + L                    ++
Sbjct: 128 PIAVSCDYSYIAETATMTIHPVRLTGLVIGVPQTFEYLD-------------------KM 168

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + V+ +    + +   F  L+    N+  D       G    G +A   GLID VGG 
Sbjct: 169 QDRVVKFVTSHSNVTEEKFKELMFSKGNLTRDI------GTNVVGKDAADYGLIDDVGGV 222

Query: 231 EEVWQSLYALGVDQSIRK 248
            +  + L  L  +    +
Sbjct: 223 GQAIKKLNQLIEEAKGEE 240


>gi|325107894|ref|YP_004268962.1| ATP-dependent Clp protease proteolytic subunit ClpP [Planctomyces
           brasiliensis DSM 5305]
 gi|324968162|gb|ADY58940.1| ATP-dependent Clp protease proteolytic subunit ClpP [Planctomyces
           brasiliensis DSM 5305]
          Length = 215

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 65/204 (31%), Gaps = 33/204 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D+    ++ ++  +  ++    + + ++SPGGS  A  AI+  +Q +    
Sbjct: 43  IIFLDGPIHDASANLIVMKLLYLQSENRHQDVHLYINSPGGSVTATLAIYDTMQFLDCDV 102

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  +   A     +   S +       Q                    
Sbjct: 103 ATYCVGLAASGGAVLMAGGAKGKRYSLPHSKMMIHQPFGQ-------------------V 143

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
               ++    ++      + +  ++       +  +++               R  T  E
Sbjct: 144 GGQVSDIEIQAQEIINTRETLNQILADHTGQPIERIAK----------DTERDRYLTAKE 193

Query: 218 AKKVGLIDVVGGQEEVWQSLYALG 241
           AK+ GL+D V   E++ ++     
Sbjct: 194 AKEYGLVDEV--VEKIKKTAAEKA 215


>gi|237812956|ref|YP_002897407.1| peptidase S14, ClpP [Burkholderia pseudomallei MSHR346]
 gi|237505260|gb|ACQ97578.1| peptidase S14, ClpP [Burkholderia pseudomallei MSHR346]
          Length = 366

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 79/218 (36%), Gaps = 43/218 (19%)

Query: 30  HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
             +     VA I I   I     D+Q  + +++ ++ D  A+++ V+++S GG  +   A
Sbjct: 13  QAQAGGGKVAEIRIYSDIGFWGTDAQNFVSQLDAVAAD--ASSITVAINSMGGDVFDAFA 70

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I+ A+++   +      V  +AASA  L+  A + I   E +L+                
Sbjct: 71  IYNALRRYAGKVK--GRVDGIAASAASLVLMACDEIEMPENALLMIHH------------ 116

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
                   +V +   K        ++            ++    +   +    +  D   
Sbjct: 117 ------PHTVAAGESKDLRRVAELLD------------NASAGILAAYARRSGLSEDDVR 158

Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
            + D   W T A+AK+ G  DV+    E    L A   
Sbjct: 159 AMMDAETWLTAAQAKEKGFCDVI----EAPVKLAASAG 192


>gi|169830994|ref|YP_001716976.1| peptidase S14, ClpP [Candidatus Desulforudis audaxviator MP104C]
 gi|169637838|gb|ACA59344.1| peptidase S14, ClpP [Candidatus Desulforudis audaxviator MP104C]
          Length = 266

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 57/198 (28%), Gaps = 25/198 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + ++ ++  + +      ++V L++ GG   AG AI   +  +      +      +   
Sbjct: 83  EHILPQLVALEQHPDIEGILVILNTVGGDVEAGLAIAEMLSSISKPTVSLVLGGGHSIGV 142

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +  + + I    +  +  I +  Q   V    + L      V    +K         
Sbjct: 143 PIAVCTSYSYIAETASMTIHPIRITGQILTVPQTFEYLEKMQDRVVRFVVKHSRIT---- 198

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             +                +                   G +  G EA   GLID VGG 
Sbjct: 199 --EERFRELMFRTGELARDI-------------------GTVLIGKEAVDCGLIDEVGGI 237

Query: 231 EEVWQSLYALGVDQSIRK 248
               + L  L     I K
Sbjct: 238 GASMRKLNELVEQARIGK 255


>gi|255658239|ref|ZP_05403648.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mitsuokella
           multacida DSM 20544]
 gi|260849549|gb|EEX69556.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mitsuokella
           multacida DSM 20544]
          Length = 199

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 59/193 (30%), Gaps = 31/193 (16%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D+    ++ ++  +  +D    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 24  IIFLGGPIDDAVANTVVAQLLFLESEDPDKDIHLYINSPGGVVTAGLAIYDTMQYIKPDV 83

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   + +     L         +      I+ ++ 
Sbjct: 84  STICIGQAASMGALLLTAGAKGKRYALPNARIMIHQPLGGAQGQSTDIQIQAREIQRIR- 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                                             LV  +                 T  E
Sbjct: 143 ----------------------------EVINDILVESTGKDRETVVQDTERDNFMTAEE 174

Query: 218 AKKVGLIDVVGGQ 230
           AK  GL+D V  +
Sbjct: 175 AKAYGLVDEVITR 187


>gi|167893326|ref|ZP_02480728.1| peptidase S14, ClpP [Burkholderia pseudomallei 7894]
          Length = 358

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 43/218 (19%)

Query: 30  HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
             +     VA I I   I     D+Q  + +++ I+ D  A+++ V+++S GG  +   A
Sbjct: 13  QAQAGGGKVAEIRIYSDIGFWGTDAQNFVSQLDAIATD--ASSITVAINSMGGDVFDAFA 70

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I+ A+++   +      V  +AASA  L+  A + I   E +L+                
Sbjct: 71  IYNALRRYAGKVK--GRVDGIAASAASLVLMACDEIEMPENALLMIHH------------ 116

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
                   +V +   K        ++            ++    +   ++   +  D   
Sbjct: 117 ------PHTVAAGESKDLRRVAELLD------------NASAGILAAYAQRSGLSEDDVR 158

Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
            + D   W T A+AK+ G  DV+    E    L A   
Sbjct: 159 AMMDAETWLTAAQAKEKGFCDVI----EAPVKLAASAG 192


>gi|51892696|ref|YP_075387.1| ATP-dependent Clp protease proteolytic subunit [Symbiobacterium
           thermophilum IAM 14863]
 gi|51856385|dbj|BAD40543.1| ATP-dependent clp protease proteolytic subunit [Symbiobacterium
           thermophilum IAM 14863]
          Length = 260

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 72/227 (31%), Gaps = 37/227 (16%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73
             ++ V   SP++  + I GQ+E              + +I ++  + +      L++ L
Sbjct: 46  IGTTSVPQVSPNIHLLTIIGQVEGHLALPPQNKTTKYEHIIPQLVAVEQSPEIEGLLLVL 105

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           ++ GG   AG AI   +  +              +     +       +    ++  +  
Sbjct: 106 NTVGGDVEAGLAIAEMVASL--------------SKPSVSLVLGGGHSIGVPIAVSTTYS 151

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
            +     +     +L   +  V             ++  + V+ +      S   F  L+
Sbjct: 152 FIAATATMTIHPIRLTGLVIGVP-----QTYEYLDKMQDRVVRFVVSNSRISEERFRELM 206

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                           G +  G +A + GLID VGG  +    L  L
Sbjct: 207 F-RTGELARDV-----GTVVVGPDAVREGLIDEVGGLSDAVAKLNQL 247


>gi|145633616|ref|ZP_01789343.1| predicted inner membrane peptidase [Haemophilus influenzae 3655]
 gi|144985493|gb|EDJ92309.1| predicted inner membrane peptidase [Haemophilus influenzae 3655]
          Length = 127

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 3/100 (3%)

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
              K   +   E   K  Q  Q  ++ ++  F + VS++R         ++ G  W G +
Sbjct: 4   GEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATGEHWFGQQ 61

Query: 218 AKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256
           A  + L+D +   +++  + +    V     ++K     K
Sbjct: 62  AIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKK 101


>gi|150390425|ref|YP_001320474.1| peptidase S14, ClpP [Alkaliphilus metalliredigens QYMF]
 gi|149950287|gb|ABR48815.1| peptidase S14, ClpP [Alkaliphilus metalliredigens QYMF]
          Length = 254

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 80/230 (34%), Gaps = 37/230 (16%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALI 70
           +    + ++      +  + I G IE              + +I ++  + ++ +   ++
Sbjct: 38  IQALGTPNIPQMDQSIHVLTIIGHIEGHMVAPPQNKSTKYEHVIPQLMTVEQNPNVEGML 97

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           V L++ GG   AG A+   I  +   KP +T V     S G  ++ A +    A ++ + 
Sbjct: 98  VILNTAGGDVEAGLALSELINTL--SKPTVTLVLGGGHSIGVPLATAGDYSFIAPSATMT 155

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
              +      +                         FS++  + +  + +  +     F+
Sbjct: 156 IHPIRMTGLVIGVP-----------------QTFQYFSKMQDRIIDFVVNNSNVDKDIFI 198

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
            L++          L    G I  G +A K  LID VGG +     L  L
Sbjct: 199 ELMNT------TDELANDVGTILIGEDAVKHKLIDEVGGLDRAMAKLREL 242


>gi|158316682|ref|YP_001509190.1| endopeptidase Clp [Frankia sp. EAN1pec]
 gi|158112087|gb|ABW14284.1| Endopeptidase Clp [Frankia sp. EAN1pec]
          Length = 236

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 43  IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102
           +   I ++  +  ++  ++ DD +  + + ++SPGGS  AG AI+  +Q + N    +  
Sbjct: 57  VEDTIANA--ICAKLLLLASDDPSADIHLYINSPGGSVSAGMAIYDTMQYIANDVATVAL 114

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
               +     L S A     A   S V                                 
Sbjct: 115 GFAGSMGQFLLSSGAPGKRFALPHSRVMMHQPSGGIGG---------------------- 152

Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKV 221
                       + +  + +  +       ++E    P ++    SD  R +T  EA+  
Sbjct: 153 --------TATDIAIQAEQLLFTKRLIQERIAEHTGQPVERIEADSDRDRWFTAEEARDY 204

Query: 222 GLIDVVGGQEE 232
           GL+D V  + +
Sbjct: 205 GLVDRVITRVD 215


>gi|90410782|ref|ZP_01218797.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
           profundum 3TCK]
 gi|90328413|gb|EAS44711.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
           profundum 3TCK]
          Length = 207

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 63/196 (32%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L  +      +      I ++  
Sbjct: 102 STVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQIHAQEILTI-- 159

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L++E    P +            +  
Sbjct: 160 ----------------------------KQRLNNLLAEHTGQPLEIVEGDTDRDNFMSAD 191

Query: 217 EAKKVGLIDVVGGQEE 232
           +A + GL+D V  Q +
Sbjct: 192 QAVEYGLVDSVLTQRD 207


>gi|294846003|gb|ADF43161.1| SPP1Cm [Chlamydomonas reinhardtii]
          Length = 631

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 24/119 (20%)

Query: 35  SPHVARIAIRGQIE-----------------------DSQELIERIERISRDDSATALIV 71
            P +A + + G I                        D+ +L+  +  +  D+   A++V
Sbjct: 405 EPCIAVVTVSGTIVQGPVPPGSLAANNQQQQQQQQVVDAAKLVADLRMMMDDNLVRAVVV 464

Query: 72  SLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
            ++SPGGSA A ++I R +Q++K   K V+  + ++AA   Y I+ A+N +VA   ++ 
Sbjct: 465 RVNSPGGSALASDSIRRELQRLKTLGKTVVVSMGDVAAGGAYYIASAANAVVAQPGTVT 523


>gi|295102204|emb|CBK99749.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Faecalibacterium prausnitzii L2-6]
          Length = 228

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 49/188 (26%), Gaps = 25/188 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  +  D +   L+V L++ GG   AG A+   I  +      +      +   
Sbjct: 60  EHVIPQLVAVQEDPAIEGLLVLLNTVGGDVEAGLALAELIASISKPSAAVVLGGGHSIGI 119

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
                 A    +    ++              P   +    ++   +             
Sbjct: 120 PL-AVSAQRSFIVPTATMTIHPVRHSGMILGVPQTMRWFEQMQERITG------------ 166

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                                 +                G +  G +A +  LID +GG 
Sbjct: 167 -------FVASHSGISEKRYTELMMRTGELVMDV-----GTVLDGRKAVREKLIDELGGL 214

Query: 231 EEVWQSLY 238
            +    LY
Sbjct: 215 SDALAWLY 222


>gi|188586087|ref|YP_001917632.1| ATP-dependent Clp protease proteolytic subunit ClpP [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350774|gb|ACB85044.1| ATP-dependent Clp protease proteolytic subunit ClpP [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 280

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 71/195 (36%), Gaps = 25/195 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + ++ ++    ++     ++V L++ GG   AG AI   +  +   KP ++ V     S 
Sbjct: 72  EHVLPQLVAAEQNPQVEGILVILNTVGGDVEAGLAIAEMLDSI--SKPSVSLVLGGGHSI 129

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  I+ A++    A+T+ +    +                      +  +   P  +  +
Sbjct: 130 GVPIAVATDYSYIAQTATMTIHPIR--------------------LTGQLIGVPQTYDYL 169

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                +++  V   S     +L    R +     L    G +  G +A + GLI+ VGG 
Sbjct: 170 EKMQDRVLSFVTQHSGIHPEQL---RRLMFNSGQLARDIGTVLVGEDAVREGLINEVGGI 226

Query: 231 EEVWQSLYALGVDQS 245
            +    L ++     
Sbjct: 227 GQAVNRLESMLRRGD 241


>gi|146163651|ref|XP_001012050.2| hypothetical protein TTHERM_00984990 [Tetrahymena thermophila]
 gi|146145966|gb|EAR91805.2| hypothetical protein TTHERM_00984990 [Tetrahymena thermophila
           SB210]
          Length = 332

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 12/172 (6%)

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
              EA+ +A +K++   P+ T   + A    YL+      + A   S++GSI     Y  
Sbjct: 69  TFYEALRQASEKLRA--PLYTFSEDQALGDSYLLLSLGETVTANPFSIIGSINSRINYIS 126

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
            +   ++LG+      SS       P  +  P  +Q+ +            L+ + R   
Sbjct: 127 FEKLFERLGIKYDIYTSSSPA--FLPSRKPTPSDIQLAEQSNQEVLESIQNLILQKRGKH 184

Query: 201 YD--------KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           ++            +  G+ +T  +A K GLID +G   E   S+Y+    +
Sbjct: 185 FENKGISREQAKKEILSGQTFTAQQALKNGLIDQIGTFYEFKDSMYSHHKIR 236


>gi|257063882|ref|YP_003143554.1| protease subunit of ATP-dependent protease [Slackia
           heliotrinireducens DSM 20476]
 gi|256791535|gb|ACV22205.1| protease subunit of ATP-dependent protease [Slackia
           heliotrinireducens DSM 20476]
          Length = 206

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 60/195 (30%), Gaps = 31/195 (15%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D+    ++ ++  +   D    + + ++SPGGS  AG AI+ A+Q ++   
Sbjct: 34  IIFLGDAIDDNVANLVVAQLLHLESSDPEKDISLYINSPGGSVSAGMAIYDAMQFIRCDV 93

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      + ++    +           S +     +          D    + +    
Sbjct: 94  STVCIGMAASMASVLTAAGTPGKRFITPNSQIMIHQPMGGAESRTQQTDFEIAATE---- 149

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +  +      +++       +     S+   W T  
Sbjct: 150 ------------------------MRKTRERLEGILAAHTGQTIETIHADSERDHWLTAE 185

Query: 217 EAKKVGLIDVVGGQE 231
           EAK  GL+D +    
Sbjct: 186 EAKAYGLVDEIITSR 200


>gi|261250806|ref|ZP_05943380.1| nfed family protein [Vibrio orientalis CIP 102891]
 gi|260937679|gb|EEX93667.1| nfed family protein [Vibrio orientalis CIP 102891]
          Length = 448

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 75/230 (32%), Gaps = 23/230 (10%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISR 62
           L++IK       L+         +      +  V  I+I G I  +    + ++I+  ++
Sbjct: 3   LQRIKALLYAF-LILWWPASVVQAEKNNAPNQTVPVISISGAIGPAVGDYVTKQIQLANQ 61

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
             +  AL++++ +PGG   +   I + I         +                      
Sbjct: 62  QPNVPALMITIDTPGGLVSSLRDINQTILASNIPILCLVHP-------------QGARAA 108

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           +A T ++ +  +    P        L      V      +   P  +         + + 
Sbjct: 109 SAGTFILYACHIAAMAPATTLGAATL------VSIGGGGSPNQPQEKPQTPTAMEKKVLN 162

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
           DS  +         RN  + +   + D    + +EAK+  +I+++    E
Sbjct: 163 DSIAYIRSLAQLRGRNAEWAE-SAVRDAATLSASEAKEKNVINLIADSPE 211


>gi|253578408|ref|ZP_04855680.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850726|gb|EES78684.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 234

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 63/190 (33%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + ++ ++  I  D+    L++ L++ GG   AG AI   I  +      +      +   
Sbjct: 65  EHVLPKLAIIEDDEEIEGLLILLNTVGGDVEAGLAIAEMIASLSIPTVSLVLGGGHSIGV 124

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +S   +  V + T ++  +     +  V      +      + +   +   +    +
Sbjct: 125 PMAVSADYSFAVPSATMVIHPVRSNGMFIGVAQTYRNMEKIQDRITTFISEHSKASQKRL 184

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
               +   Q V D                          G +  G EA K GLID VGG 
Sbjct: 185 EELMLDTSQLVKDV-------------------------GTMLEGKEAVKEGLIDEVGGI 219

Query: 231 EEVWQSLYAL 240
           +E    LY +
Sbjct: 220 KEALAKLYEM 229


>gi|89073230|ref|ZP_01159760.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium sp.
           SKA34]
 gi|90579278|ref|ZP_01235088.1| ATP-dependent Clp protease proteolytic subunit [Vibrio angustum
           S14]
 gi|89050940|gb|EAR56404.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium sp.
           SKA34]
 gi|90440111|gb|EAS65292.1| ATP-dependent Clp protease proteolytic subunit [Vibrio angustum
           S14]
          Length = 207

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 63/196 (32%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L  +      +      I ++  
Sbjct: 102 STVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQIHAQEILTI-- 159

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L++E    P +            +  
Sbjct: 160 ----------------------------KQRLNGLLAEHTGQPLEVVERDTDRDNFMSAE 191

Query: 217 EAKKVGLIDVVGGQEE 232
           +A + GL+D V  Q +
Sbjct: 192 QAVEYGLVDAVLSQRD 207


>gi|239826674|ref|YP_002949298.1| peptidase S14 ClpP [Geobacillus sp. WCH70]
 gi|239806967|gb|ACS24032.1| peptidase S14 ClpP [Geobacillus sp. WCH70]
          Length = 245

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 60/211 (28%), Gaps = 33/211 (15%)

Query: 43  IRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           I G I           + +I +I  I ++ +   L+V L++ GG   AG AI   +  + 
Sbjct: 52  IEGHIQLPPQNKATKYEHVIPQIVAIEQNQNIEGLLVILNTVGGDVEAGLAIAEMLASLS 111

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
                I      +      +SC  + I    T  +  + +      V    + L    + 
Sbjct: 112 KPTVSIVLGGGHSIGVPIAVSCDYSFITETATMTIHPVRLTGLVIGVPQTFEYLDKMQER 171

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
           V     K       +             D                          G    
Sbjct: 172 VVRFVTKHSKITEEKFKELMFSKGNLTRDI-------------------------GTNVV 206

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           G +A K GLID VGG  +    L  L     
Sbjct: 207 GPDAVKYGLIDEVGGVAQAMNKLRELIELNK 237


>gi|327540247|gb|EGF26836.1| Peptidase S14, ClpP [Rhodopirellula baltica WH47]
          Length = 205

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + ++G+I   ++ E++ ++  +  ++    + + ++SPGGS  A  AI+  +Q +    
Sbjct: 33  IVFMQGEIHYANANEIVMKLLYLQSENRRKDIHLYINSPGGSVTATLAIYDTMQMLSCPV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    + +A  LI  A         S V     L         ++     +     
Sbjct: 93  ATYCVGEACSGAAVLLIGGAKGKRFCLPNSRVMMHQPLGGVSGQVSDIEIQAAEM----- 147

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
                                             ++S       ++    +D   +    
Sbjct: 148 -------------------------FRYRDKLNEIISSHCGKSVEQIAKDTDRDFFLDAQ 182

Query: 217 EAKKVGLIDVV 227
           +AK+ GL+D +
Sbjct: 183 QAKEYGLVDDL 193


>gi|299755201|ref|XP_001828495.2| ATP-dependent Clp protease proteolytic subunit [Coprinopsis cinerea
           okayama7#130]
 gi|298411115|gb|EAU93328.2| ATP-dependent Clp protease proteolytic subunit [Coprinopsis cinerea
           okayama7#130]
          Length = 254

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 56/190 (29%), Gaps = 24/190 (12%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D+    ++ ++  +  +DS   + + ++SPGGS  AG AI+  +Q V    
Sbjct: 72  VIMLHGPIRDTDSTLVVAQLLFLEAEDSTKPIHLYINSPGGSVTAGLAIYDTMQYVSAPI 131

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L + A         + +               +      I  ++ 
Sbjct: 132 HTYGLGLAASMGSLLLAAGAKGRRHCLPNASIMIHQPSGGASGQATDIAIHAKEILRIRQ 191

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                     ++        ++                           L      T  E
Sbjct: 192 LLTGIYQRHCAKEGETEAAGLKRFET----------------------ALERDYYMTAQE 229

Query: 218 AKKVGLIDVV 227
           A + G++D +
Sbjct: 230 ALEFGIVDGI 239


>gi|228992486|ref|ZP_04152413.1| Translocation-enhancing protein tepA [Bacillus pseudomycoides DSM
           12442]
 gi|229002772|ref|ZP_04160674.1| Translocation-enhancing protein tepA [Bacillus mycoides Rock3-17]
 gi|229008526|ref|ZP_04165954.1| Translocation-enhancing protein tepA [Bacillus mycoides Rock1-4]
 gi|228752750|gb|EEM02350.1| Translocation-enhancing protein tepA [Bacillus mycoides Rock1-4]
 gi|228758487|gb|EEM07632.1| Translocation-enhancing protein tepA [Bacillus mycoides Rock3-17]
 gi|228767120|gb|EEM15756.1| Translocation-enhancing protein tepA [Bacillus pseudomycoides DSM
           12442]
          Length = 249

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHVIPQIVAIEQNPKIEGLLLLLNTVGGDVEAGLAISEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPVRLTGLVIGVP-----QTFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGIDAVKYGLIDDVGGI 224

Query: 231 EEVWQSLYAL 240
            +  + L  L
Sbjct: 225 GDAIRKLNEL 234


>gi|163941483|ref|YP_001646367.1| peptidase S14 ClpP [Bacillus weihenstephanensis KBAB4]
 gi|229012979|ref|ZP_04170144.1| Translocation-enhancing protein tepA [Bacillus mycoides DSM 2048]
 gi|229061399|ref|ZP_04198744.1| Translocation-enhancing protein tepA [Bacillus cereus AH603]
 gi|229134603|ref|ZP_04263413.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-ST196]
 gi|229168535|ref|ZP_04296258.1| Translocation-enhancing protein tepA [Bacillus cereus AH621]
 gi|163863680|gb|ABY44739.1| peptidase S14 ClpP [Bacillus weihenstephanensis KBAB4]
 gi|228614941|gb|EEK72043.1| Translocation-enhancing protein tepA [Bacillus cereus AH621]
 gi|228648864|gb|EEL04889.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-ST196]
 gi|228717822|gb|EEL69470.1| Translocation-enhancing protein tepA [Bacillus cereus AH603]
 gi|228748233|gb|EEL98093.1| Translocation-enhancing protein tepA [Bacillus mycoides DSM 2048]
          Length = 249

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 64/196 (32%), Gaps = 25/196 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDGVGGI 224

Query: 231 EEVWQSLYALGVDQSI 246
               + L  L  ++  
Sbjct: 225 GSALRKLNELIDERKD 240


>gi|261367425|ref|ZP_05980308.1| Clp protease [Subdoligranulum variabile DSM 15176]
 gi|282570193|gb|EFB75728.1| Clp protease [Subdoligranulum variabile DSM 15176]
          Length = 239

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 55/195 (28%), Gaps = 25/195 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  I  D     L+V L++ GG   AG A+   I  V      +      +   
Sbjct: 70  EHVIPQLVDIEEDPEIEGLLVILNTVGGDVEAGLALAELIAGVSKPSATLVLGGGHSIGI 129

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
                 A    +    ++              P   +    ++      +          
Sbjct: 130 PL-AVSARRSFIVPTATMTVHPVRHSGMVLGVPQTLRYFEQMQERIVGFVAGHSG----- 183

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                 +      +  H    LV +              G +  G +A + GLID +GG 
Sbjct: 184 ------ITARRFTTLMHNTGELVMD-------------MGTVLDGRQAVEEGLIDELGGL 224

Query: 231 EEVWQSLYALGVDQS 245
            +    LY     + 
Sbjct: 225 SDALGYLYREIERKK 239


>gi|260587637|ref|ZP_05853550.1| translocation-enhancing protein TepA [Blautia hansenii DSM 20583]
 gi|260541902|gb|EEX22471.1| translocation-enhancing protein TepA [Blautia hansenii DSM 20583]
          Length = 256

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 37/231 (16%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
              +   H+  ++I G++E              + ++ ++  I        L++ L++ G
Sbjct: 50  EENEKEYHIQLLSIIGEVEGHECLPNNSKTTKYEHVLPKLAMIEDSKETDGLLILLNTVG 109

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G   AG AI   I  +      +      +      +S   + IV + T ++  +     
Sbjct: 110 GDVEAGLAIAEMIASLSKPTVSLVLGGGHSIGVPMAVSADYSYIVPSATMVIHPVRSNGM 169

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
           +  V      +      +          P   +    +   Q V D              
Sbjct: 170 FIGVMQTYRNMEKIQDRITRFIASHSKMPQKRIEQLMLDTSQLVKDV------------- 216

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                       G +  G EA K GLID  GG  +    LY L   +  +K
Sbjct: 217 ------------GTMLEGEEAVKEGLIDETGGICQALHKLYELIEKEKAQK 255


>gi|60389653|sp|Q6LNW0|CLPP_PHOPR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 199

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 64/196 (32%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 34  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 93

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L  +      +      I ++K 
Sbjct: 94  STVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQIHAKEILTIKH 153

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L+++    P +            +  
Sbjct: 154 ------------------------------RLNSLLAKHTGQPLEVVEGDTDRDNFMSAD 183

Query: 217 EAKKVGLIDVVGGQEE 232
           +A + GL+D V  Q +
Sbjct: 184 QAVEYGLVDSVLTQRD 199


>gi|326791245|ref|YP_004309066.1| peptidase S14 ClpP [Clostridium lentocellum DSM 5427]
 gi|326542009|gb|ADZ83868.1| peptidase S14 ClpP [Clostridium lentocellum DSM 5427]
          Length = 279

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 68/199 (34%), Gaps = 25/199 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  +  D     +++ L++ GG   AG A+   I  V   KP ++ V   A S 
Sbjct: 106 EHIIPQMVGLCDDPKIKGILIILNTVGGDVEAGLALAELIASV--NKPTVSLVLGGAHSI 163

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  I+ AS+      T+ +    V      +                         F ++
Sbjct: 164 GVPIAVASDYSFITPTATMTIHPVRMNGTVIGVQ-----------------QTFEFFDQM 206

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + V  +          F  L+     +  D       G I  G EA    +ID +GG 
Sbjct: 207 QERIVAFVARNSHIEETRFKELMLSVGKLARD------VGTILVGQEAVDEKIIDELGGL 260

Query: 231 EEVWQSLYALGVDQSIRKI 249
            E    L+ L  +    ++
Sbjct: 261 TEAMSKLHQLIAESEANEL 279


>gi|169841767|ref|ZP_02874876.1| Protease IV [candidate division TM7 single-cell isolate TM7a]
          Length = 75

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 35/75 (46%)

Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEA 218
                   F+ ++ ++   +   +  +Y  F   VS+SR I  +     + G+IW G EA
Sbjct: 1   KYSDINDSFAPLSQESRDKITQSMQETYSEFKSRVSKSRKIDENTLENYAQGKIWLGDEA 60

Query: 219 KKVGLIDVVGGQEEV 233
           K + L+D +   +EV
Sbjct: 61  KNINLVDGIASLDEV 75


>gi|325680800|ref|ZP_08160338.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Ruminococcus albus 8]
 gi|324107580|gb|EGC01858.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Ruminococcus albus 8]
          Length = 229

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 60/190 (31%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I  +  + +D     L++ L++ GG   AG AI   I  +      +        S 
Sbjct: 56  EHIIPALVAVEQDSDIEGLLIVLNTVGGDVEAGLAIAELIAGMSTPTVSLVVGGGH--SI 113

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  ++  ++      T+ +    V      +                       S F ++
Sbjct: 114 GVPLAVCADRSFIVPTATMTIHPVRMSGTVLGVP-----------------QTMSYFYKM 156

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + V  +          F  L+  S             G +  G EA K GLID  GG 
Sbjct: 157 QERIVSFVCGNSSIKPERFRELMM-STGELMTDI-----GTVLEGDEAVKEGLIDSSGGL 210

Query: 231 EEVWQSLYAL 240
            +    LY L
Sbjct: 211 ADAISCLYGL 220


>gi|310641612|ref|YP_003946370.1| peptidase s14 clpp [Paenibacillus polymyxa SC2]
 gi|309246562|gb|ADO56129.1| Peptidase S14 ClpP [Paenibacillus polymyxa SC2]
          Length = 282

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 25/187 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++    ++     L++ L++ GG   AG AI   I  +      I        S 
Sbjct: 74  EHIIPQLVAAEQNPRIEGLMILLNTVGGDVEAGLAIAEMIASMSKPTVTIVIGGGH--SI 131

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  I+ +S     AE++ +    +                    +     +         
Sbjct: 132 GVPIAVSSTYSYIAESATMTIHPIRMS----------------GLVIGVPQTFEYMEKMQ 175

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                 ++     +   +   +                 G    G +A K GL+D VGG 
Sbjct: 176 ERVVRFVVSHSRITEERFKELMFKTGELNR-------DIGTAVGGIDAVKYGLMDAVGGI 228

Query: 231 EEVWQSL 237
            E  + L
Sbjct: 229 GEALKQL 235


>gi|73670912|ref|YP_306927.1| nodulation efficiency protein NfeD [Methanosarcina barkeri str.
           Fusaro]
 gi|72398074|gb|AAZ72347.1| Nodulation efficiency protein NfeD [Methanosarcina barkeri str.
           Fusaro]
          Length = 442

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 91/276 (32%), Gaps = 40/276 (14%)

Query: 11  RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERISRDDSATA 68
               +  +   ++  S  S        V  + +   I  + +  + + IE+   +++  A
Sbjct: 16  HLFFILFLCFVLIAVSMPSGDAGPQQKVLVLEVSEAITPASDDIIADAIEKA-ENENFEA 74

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           L++SL++PGG     + I  AI+               A SAG LI   ++I   A  ++
Sbjct: 75  LVISLNTPGGGLDETQTIISAIENASVPVIGYVPESGKAWSAGTLILMGTDIAAMAPFTV 134

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
           +GS   +         +    +    VK                                
Sbjct: 135 IGSAQPVQVSIEGTKPITDEKIINALVKF------------------------------S 164

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVW-----QSLYALGV 242
                   RN  + +  V++  +     EA + G+I+ V      +      Q +    +
Sbjct: 165 VATAGKHGRNETFAE-EVITKNKNLDAQEALQTGVIEYVAPSIPNLLTQIDGQEIKGKVL 223

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278
                 I+++ PP +     L +  I S L  T+ +
Sbjct: 224 QTENAGIENYEPPFSLSLLGLISNPIISSLLLTLGI 259


>gi|229086348|ref|ZP_04218525.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-44]
 gi|228696960|gb|EEL49768.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-44]
          Length = 249

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 65/196 (33%), Gaps = 25/196 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHVIPQIVAIEQNPKIEGLLLLLNTVGGDVEAGLAISEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPVRLTGLVIGVP-----QTFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGIDAVKYGLIDDVGGI 224

Query: 231 EEVWQSLYALGVDQSI 246
            +  + L  L   ++ 
Sbjct: 225 GDAIRKLNELIDIRTE 240


>gi|153840620|ref|ZP_01993287.1| type IV pilin biogenesis peptidase, putative [Vibrio
           parahaemolyticus AQ3810]
 gi|149745716|gb|EDM56846.1| type IV pilin biogenesis peptidase, putative [Vibrio
           parahaemolyticus AQ3810]
          Length = 119

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
            F E   KA    +  ++ ++  F   + E R  P  +   ++ G  W G +AK++GL+D
Sbjct: 5   MFGENTDKARDKFKQELEETHVLFKDFIRERR--PSLELEKVATGEHWFGTQAKELGLVD 62

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283
            +   +++  +        ++  +      K      L  ++        + L ++ +
Sbjct: 63  EISTSDDLVVAACKEKTVLAVHYV-----QKKKLADKLAGVASKVADSVVLKLAERGQ 115


>gi|54309798|ref|YP_130818.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
           profundum SS9]
 gi|46914236|emb|CAG21016.1| putative gi|27363512|ref|NP_759040.1| ATP-dependent Clp protease,
           proteolytic subunit [Vibrio vulnificus CMCP6]
           [Photobacterium profundum SS9]
          Length = 207

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 64/196 (32%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L  +      +      I ++K 
Sbjct: 102 STVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQIHAKEILTIKH 161

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L+++    P +            +  
Sbjct: 162 ------------------------------RLNSLLAKHTGQPLEVVEGDTDRDNFMSAD 191

Query: 217 EAKKVGLIDVVGGQEE 232
           +A + GL+D V  Q +
Sbjct: 192 QAVEYGLVDSVLTQRD 207


>gi|152967459|ref|YP_001363243.1| endopeptidase Clp [Kineococcus radiotolerans SRS30216]
 gi|151361976|gb|ABS04979.1| Endopeptidase Clp [Kineococcus radiotolerans SRS30216]
          Length = 235

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 60/186 (32%), Gaps = 27/186 (14%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + ++I ++  +   D+   +I+ ++SPGGS  A  AI+  +Q ++            +
Sbjct: 72  ASADDIIAQLIVLESQDTERDIIMYINSPGGSFTALTAIYDTMQYIRPDIQTYCMGQAAS 131

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L + A     A   S +                D    + + ++           
Sbjct: 132 AAAVLLGAGAPGKRFALPNSRILIHQPAMAGGDYGQASDLEIQANEILRM---------- 181

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
                     ++  +    H     V E           +   +  T  EA + GLID V
Sbjct: 182 -------RSWLESTLAFHSHRTADQVRE----------DIERDKFLTAREAVEYGLIDEV 224

Query: 228 GGQEEV 233
               + 
Sbjct: 225 LTSRKA 230


>gi|154494952|ref|ZP_02033957.1| hypothetical protein PARMER_03998 [Parabacteroides merdae ATCC
           43184]
 gi|154085502|gb|EDN84547.1| hypothetical protein PARMER_03998 [Parabacteroides merdae ATCC
           43184]
          Length = 460

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 95/257 (36%), Gaps = 21/257 (8%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL--IERIERISRDDSATALI 70
           + L L  + V    + S  +   P + +I I+ +I ++  L     +        A A++
Sbjct: 5   LGLFLAIILVQIAPFISAADTLYPLIYKIDIKKEISNTTRLYLSNGLAEAYAL-GADAVL 63

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + +++ GG   A +++  AI  + N  PV   +   AASAG LIS A   I   + + +G
Sbjct: 64  IHMNTYGGQVDAADSMRTAI--LYNPIPVYVFIDNNAASAGALISIACKKIYMRKGANIG 121

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           +  V+       P  + +    +S   S M++      +                     
Sbjct: 122 AATVV------NPTGEAMPDKYQSYMRSMMRSTAEAHGQDTIVQKNDTLYKWKRDPLIAE 175

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKI 249
            +V E   IP    +       +T  EA+K G  D +    +EV              K+
Sbjct: 176 AMVDERVAIP--NLIDTGKVLTFTAQEAQKWGYCDGIAENPDEVITQYLG----YKDYKM 229

Query: 250 KDWNPPKNYWFCDLKNL 266
           K + P    W  DLK  
Sbjct: 230 KSYIP---SWQDDLKGF 243


>gi|156037438|ref|XP_001586446.1| hypothetical protein SS1G_12432 [Sclerotinia sclerotiorum 1980]
 gi|154697841|gb|EDN97579.1| hypothetical protein SS1G_12432 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 198

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/196 (11%), Positives = 59/196 (30%), Gaps = 31/196 (15%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+++ S    ++ ++  +  D    A+ + ++SPGGS  AG AI+  +  +K+  
Sbjct: 23  IICLNGEVDSSLSAAVVAQLLYLESDAPEKAITLYINSPGGSVTAGLAIYDTMTYIKSPV 82

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L             S +                  + +    +  
Sbjct: 83  STVCVGQAASMGSLLLCGGEPGKRFCLPHSSIMIHQPSG---GYSGQATDIAIHATEILR 139

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216
                       +  +                            ++   + +  +  +  
Sbjct: 140 VRKSLNEIYKRHLTKE-------------------------HSLEEIERMMERDKFLSAQ 174

Query: 217 EAKKVGLIDVVGGQEE 232
           EA  +G++D +  + E
Sbjct: 175 EALDMGIVDEILDRRE 190


>gi|298674034|ref|YP_003725784.1| hypothetical protein Metev_0056 [Methanohalobium evestigatum
           Z-7303]
 gi|298287022|gb|ADI72988.1| protein of unknown function DUF107 [Methanohalobium evestigatum
           Z-7303]
          Length = 434

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 75/206 (36%), Gaps = 3/206 (1%)

Query: 14  MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-SQELIERIERISRDDSATALIVS 72
            L +++L       S         V  + I   I   S +L+     ++ D++  A++++
Sbjct: 9   FLIIISLFFFIVMMSPCAIAQEEKVLVVEISDSITSASDDLVTNAISVAEDENYDAIVLT 68

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGS 131
           L++PGG       I  +I+                A SAG +I  +++I   A  S++GS
Sbjct: 69  LNTPGGKLSETFNIIESIESTNVPVIGYVYPEGTKAWSAGTIILISTDIAAMAPFSVIGS 128

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
              +         ++        V+ +  KA  +    V      + +++  ++      
Sbjct: 129 AQPVQLTGGGSQPINDSKTINAIVEYTREKARQN-NRNVTAAEEFITKNLNINAETALEY 187

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAE 217
            V E  +      L   DG +  G +
Sbjct: 188 NVIEYTSPSIGDLLSQVDGDVAKGKQ 213


>gi|332981522|ref|YP_004462963.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mahella
           australiensis 50-1 BON]
 gi|332699200|gb|AEE96141.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mahella
           australiensis 50-1 BON]
          Length = 235

 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 62/211 (29%), Gaps = 33/211 (15%)

Query: 43  IRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           I G I           + +I ++  +        L+V L++ GG   AG A+   I  + 
Sbjct: 48  IEGHIVLPPQNKTTKYEHVIPQLVAVEESREVEGLLVVLNTVGGDVEAGLALAEMIATLS 107

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
                +      +      +S   + IV + T  +  I +      V    +        
Sbjct: 108 KPTVSLVLGGGHSIGVPLAVSTDYSFIVPSATMTIHPIRMSGMIIGVPQTYEYFNKMQDR 167

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
           +             ++    ++  +   D                          G +  
Sbjct: 168 ILQFICDHSHITIDKLKEYMLKTGELANDI-------------------------GTVLI 202

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           G EA + GLID +GG  +    L  L  ++ 
Sbjct: 203 GEEATRCGLIDEIGGVSKAIIKLKQLIDERK 233


>gi|268608938|ref|ZP_06142665.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ruminococcus
           flavefaciens FD-1]
          Length = 228

 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 65/199 (32%), Gaps = 25/199 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I  +  + +D S   L++ L++ GG   AG AI   I  +K     +        S 
Sbjct: 55  EHIIPALVAVEQDRSVEGLLIILNTVGGDVEAGLAIAELISGMKTPTVSLVVGGGH--SI 112

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  ++ ++       ++ +    V      +                            +
Sbjct: 113 GVPLAVSAKKSFIVPSASMTIHPVRMNGTVL-----------------------GVPQTL 149

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
           +       + V     +  +        +   + LVL  G +  G +A ++GLID  G  
Sbjct: 150 SYFQRMQDRIVRFVVGNSGISEEDFRSLMMNTEELVLDVGSVVEGEKAVELGLIDSCGSL 209

Query: 231 EEVWQSLYALGVDQSIRKI 249
            +    LY +  +   R +
Sbjct: 210 GDAMDCLYDMIENSDKRYV 228


>gi|323449038|gb|EGB04929.1| hypothetical protein AURANDRAFT_38757 [Aureococcus anophagefferens]
          Length = 273

 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 54/176 (30%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           L+ ++  ++ DD    + + ++SPGGS  AG AI+  +Q V      +      +  A  
Sbjct: 110 LVAQLLYLANDDPTKDITLYINSPGGSVSAGMAIYDTMQFVPCDVSTVCFGTAASMGAFL 169

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     +   S +     L         ++     I  V                 
Sbjct: 170 LGAGAKGKRRSLPNSRIMIHQPLGGAQGQAADIEIQAKEILFV----------------- 212

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GAEAKKVGLIDVV 227
                               +SE    P DK     D   +    EA   GLID V
Sbjct: 213 -------------RQQLNTFISEYTGQPMDKIEEDCDRDFFMCPEEALSYGLIDEV 255


>gi|303316037|ref|XP_003068023.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240107699|gb|EER25878.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|320032384|gb|EFW14337.1| ATP-dependent Clp protease [Coccidioides posadasii str. Silveira]
          Length = 237

 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 63/195 (32%), Gaps = 31/195 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++++  S  ++ ++  +  D+    + + ++SPGGS  AG AI+  +  +++  
Sbjct: 62  IVCLNGEVDETVSASIVAQLLFLEADNPEKQISLYINSPGGSVTAGLAIYDTMTYIQSPV 121

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L             S V        Y      +            
Sbjct: 122 STICVGQAASMGSLLLCGGEPGKRFCLPHSSVMVHQPSGGYFGQATDIAIHA-------- 173

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
              K       ++N    + +                    +  ++   L +   + G  
Sbjct: 174 ---KEILRVRKQLNEIYRRHLTKD-----------------MSLEEIEKLMERDYFMGAK 213

Query: 217 EAKKVGLIDVVGGQE 231
           EA  +G++D +  + 
Sbjct: 214 EALDMGIVDGIMDRR 228


>gi|207091881|ref|ZP_03239668.1| signal peptide protease IV [Helicobacter pylori HPKX_438_AG0C1]
          Length = 115

 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 47/103 (45%), Gaps = 3/103 (2%)

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
            + +Q++V+  Y  FV  V+++R +        ++G++++  +A K+ LID +   ++  
Sbjct: 10  KEFLQNLVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQ 69

Query: 235 QSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
             L  L   +    ++     +   F +    S ++++   + 
Sbjct: 70  NRLMELSKVKKAYWLEKSPMER---FIEKATQSATNIITQALG 109


>gi|289551370|ref|YP_003472274.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           lugdunensis HKU09-01]
 gi|315658877|ref|ZP_07911744.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           lugdunensis M23590]
 gi|289180901|gb|ADC88146.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           lugdunensis HKU09-01]
 gi|315496001|gb|EFU84329.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           lugdunensis M23590]
          Length = 195

 Score = 50.8 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 65/196 (33%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  ++ ++  +   DS   + + ++SPGGS  AG AI+  IQ +K   
Sbjct: 29  IIMLGSAIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + V     L         ++           
Sbjct: 89  QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216
                                   +  +     R+++E      ++    +D     T  
Sbjct: 142 -----------------------HILKTREKLNRILAERTGQSIEQIQKDTDRDNFLTAE 178

Query: 217 EAKKVGLIDVVGGQEE 232
           EAK  GLID V   E+
Sbjct: 179 EAKAYGLIDEVMEPED 194


>gi|69245972|ref|ZP_00603744.1| signal peptide peptidase [Enterococcus faecium DO]
 gi|68195502|gb|EAN09946.1| signal peptide peptidase [Enterococcus faecium DO]
          Length = 165

 Score = 50.8 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 39/103 (37%), Gaps = 13/103 (12%)

Query: 30  HVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSP 76
              D++  + ++++ G I                +  +E+++ I  D +   + + ++SP
Sbjct: 53  EEGDSTQKIVKLSVDGTIAAGGSSGLFASEGYNHKNFMEQLKAIEEDPTVKGIFLEVNSP 112

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119
           GG  Y    I + +  ++    +   V     +A      ++ 
Sbjct: 113 GGGVYESAEIAKKLDTIRKEHDIPMYVSMKNMAASGGYYISAQ 155


>gi|229544380|ref|ZP_04433439.1| peptidase S14 ClpP [Bacillus coagulans 36D1]
 gi|229325519|gb|EEN91195.1| peptidase S14 ClpP [Bacillus coagulans 36D1]
          Length = 245

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 25/201 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  I ++     ++V L++ GG   AG AI   +  +      I          
Sbjct: 66  EHMIPQLVAIEQNPKIEGVLVILNTVGGDVEAGLAISEMLASLSKPTVSI---------- 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
                      +    ++  S   + +   +     +L   +  V             ++
Sbjct: 116 ----VLGGGHSIGVPIAVSCSYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 166

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +          F  L+    N+  D       G    G EA + GLID VGG 
Sbjct: 167 QERVIKFVTRHSHVEEEVFKDLMFAKGNLTRDI------GTNIVGQEAVQYGLIDEVGGI 220

Query: 231 EEVWQSLYALGVDQSIRKIKD 251
            +    L +L       K K+
Sbjct: 221 GKALGKLNSLIEKYRDEKGKE 241


>gi|255767379|ref|NP_389561.3| protein export-enhancing factor [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|321315446|ref|YP_004207733.1| protein export-enhancing factor [Bacillus subtilis BSn5]
 gi|238054399|sp|Q99171|TEPA_BACSU RecName: Full=Translocation-enhancing protein TepA
 gi|225185006|emb|CAB13552.3| protein export-enhancing factor [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|291484234|dbj|BAI85309.1| translocation-enhancing protein [Bacillus subtilis subsp. natto
           BEST195]
 gi|320021720|gb|ADV96706.1| protein export-enhancing factor [Bacillus subtilis BSn5]
          Length = 245

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 66/198 (33%), Gaps = 25/198 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +      I      +   
Sbjct: 68  EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 127

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +SC  + I    T  +  + +      V    + L                    ++
Sbjct: 128 PIAVSCDYSYIAETATMTIHPVRLTGLVIGVPQTFEYLD-------------------KM 168

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + V+ +    + +   F  L+    N+  D       G    G +A K GLID  GG 
Sbjct: 169 QERVVKFVTSHSNITEEKFKELMFSKGNLTRDI------GTNVVGKDAVKYGLIDHAGGV 222

Query: 231 EEVWQSLYALGVDQSIRK 248
            +    L  L  +    +
Sbjct: 223 GQAINKLNELIDEARKEE 240


>gi|170086161|ref|XP_001874304.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651856|gb|EDR16096.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 243

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 54/190 (28%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I DS    ++ ++  +  +DS   + + ++SPGGS  AG AI+  +Q V +  
Sbjct: 70  VIMLHGTIRDSDSTLIVAQLLFLEAEDSTKPIHLYINSPGGSVTAGLAIYDTMQYVSSPI 129

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
              +     +  +  L +           + +               +      I  ++ 
Sbjct: 130 HTYSLGLAASMGSLLLAAGEKGKRHCLPNASIMIHQPSGGASGQASDIAIHAKEILRIRQ 189

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                                                        +   L      T  E
Sbjct: 190 VLTGIYQRHCG-----------------------------KDGESQAEALERDYYMTAQE 220

Query: 218 AKKVGLIDVV 227
           A + G++D +
Sbjct: 221 AMEFGIVDGI 230


>gi|227540618|ref|ZP_03970667.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227239557|gb|EEI89572.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 97

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
           +WTG +A ++GL+D +G   +  +S   +   +   K+  +   K+ +   L
Sbjct: 1   MWTGEQAVEIGLVDRIGSIGDAIRSAAKMAKLKD-YKVVKYPSLKDPFSSIL 51


>gi|15614960|ref|NP_243263.1| hypothetical protein BH2397 [Bacillus halodurans C-125]
 gi|14548276|sp|Q9KA93|TEPA_BACHD RecName: Full=Translocation-enhancing protein TepA
 gi|10175017|dbj|BAB06116.1| BH2397 [Bacillus halodurans C-125]
          Length = 256

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 66/190 (34%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++    ++     L++ L++ GG   AG AI   +      KP +T V     S 
Sbjct: 77  EHIIPQLVAAEQNKKIEGLLIILNTVGGDVEAGLAIAEMVA--TMSKPTVTLVLGGGHSI 134

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  I+ A+N    AET+ +    V      +                           ++
Sbjct: 135 GVPIAVAANYSFIAETATMTIHPVRLTGLVIGVP-----------------QTFEYLDKM 177

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + V  +      S   F  L+    N+  D       G    G +A   GLID VGG 
Sbjct: 178 QERVVSFVTKHSHISEEKFKELMFSKGNLTRDI------GTNVIGTDAVTYGLIDEVGGI 231

Query: 231 EEVWQSLYAL 240
            +  Q L  L
Sbjct: 232 GKAMQKLTEL 241


>gi|323465060|gb|ADX77213.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus pseudintermedius ED99]
          Length = 195

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 67/197 (34%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  ++ ++  +   D+   + + ++SPGGS  AG AI+  IQ +K   
Sbjct: 29  IIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + V     L         ++           
Sbjct: 89  QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAK------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216
                                   +  +     +++SE    P +K    +D     T  
Sbjct: 142 -----------------------HILRTRERLNKILSERTGQPIEKIEKDTDRDNFLTAQ 178

Query: 217 EAKKVGLIDVVGGQEEV 233
           EAK+ GLID V   E+ 
Sbjct: 179 EAKEYGLIDEVMEPEKA 195


>gi|329929297|ref|ZP_08283050.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Paenibacillus sp. HGF5]
 gi|328936666|gb|EGG33109.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Paenibacillus sp. HGF5]
          Length = 258

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 25/187 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++    ++     L++ L++ GG   AG AI   I  +   KP +T V     S 
Sbjct: 80  EHMIPQLVAAEQNPRIEGLLIILNTVGGDVEAGLAIAEMIASL--SKPTVTVVIGGGHSI 137

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  I+ A++  + AE++ +    +                    +     +         
Sbjct: 138 GVPIAVAADHSIIAESATMTIHPIRMS----------------GLVIGVPQTFEYMEKMQ 181

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                 +      +   +   +                 G   +G +A K GL++ VGG 
Sbjct: 182 ERVVRFVTSHSGITEEQFKDLMFKTGELNR-------DIGTAVSGTDAVKYGLMNEVGGI 234

Query: 231 EEVWQSL 237
            +    L
Sbjct: 235 GQALSRL 241


>gi|293115362|ref|ZP_05791142.2| Clp protease [Butyrivibrio crossotus DSM 2876]
 gi|292810238|gb|EFF69443.1| Clp protease [Butyrivibrio crossotus DSM 2876]
          Length = 211

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 64/209 (30%), Gaps = 36/209 (17%)

Query: 41  IAIRGQIED-----------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
           + I G+IE              E+I R+  I  +D    ++  +++ GG   AG AI   
Sbjct: 18  VYILGEIEGHDGGGSDKNTKYDEIIPRLVSIENNDDVDGVLFVINTMGGDVSAGLAIAEM 77

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           I  +      +      +      ++   + IV + T ++  + +       +    +  
Sbjct: 78  IAGLSKPTVSLVIGESHSIGVPIAVAANYSFIVKSATVVIHPVRMTGTILGTRQTYRQFR 137

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
                +              ++  +    + +        +                   
Sbjct: 138 SIQDRIV-----------RFISEHSRCGEESIEKMMMDTSMMSS--------------DL 172

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           G I  G EA + GLID  G  ++ W  L 
Sbjct: 173 GTILVGEEAVEAGLIDENGSIDKAWNKLK 201


>gi|315656915|ref|ZP_07909802.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492870|gb|EFU82474.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 292

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 63/205 (30%), Gaps = 37/205 (18%)

Query: 30  HVEDNSPHVARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           + + ++  V  + I G I +      ++   I     +  +  + + L+SPGG   A   
Sbjct: 14  NTDSDADAVRVLHISGTIAEESWFDDDITPSIFAAELNAGSGPVKIWLNSPGGDVVAAAQ 73

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I+  +  +     V   +  +AASA  +I+ A+  +  +  S++            K  L
Sbjct: 74  IYNML--IDYPGTVTVNIDGIAASAASVIAMAATKVAMSPVSMLMIHNPATMAVGDKDEL 131

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            +    + SV                                  +    E   +   K  
Sbjct: 132 ARAMNMLDSV------------------------------KESILNAYQEKTGMSRAKLS 161

Query: 206 VLSDGRIWT-GAEAKKVGLIDVVGG 229
            L D   W     A  +G  D +  
Sbjct: 162 KLMDAETWMDARAAIDMGFADELLT 186


>gi|261407921|ref|YP_003244162.1| peptidase S14 ClpP [Paenibacillus sp. Y412MC10]
 gi|261284384|gb|ACX66355.1| peptidase S14 ClpP [Paenibacillus sp. Y412MC10]
          Length = 258

 Score = 50.0 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 25/187 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++    ++     L++ L++ GG   AG AI   I  +   KP +T V     S 
Sbjct: 80  EHMIPQLVAAEQNPRIEGLLIILNTVGGDVEAGLAIAEMIASL--SKPTVTVVIGGGHSI 137

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  I+ A++  + AE++ +    +                    +     +         
Sbjct: 138 GVPIAVAADHSIIAESATMTIHPIRMS----------------GLVIGVPQTFEYMEKMQ 181

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                 +      +   +   +                 G   +GA+A K GL++ VGG 
Sbjct: 182 ERVVRFVTSHSGITEEQFKDLMFKTGELNR-------DIGTAVSGADAVKYGLMNEVGGI 234

Query: 231 EEVWQSL 237
            +    L
Sbjct: 235 GQALSRL 241


>gi|295399870|ref|ZP_06809851.1| peptidase S14 ClpP [Geobacillus thermoglucosidasius C56-YS93]
 gi|312111618|ref|YP_003989934.1| peptidase S14 ClpP [Geobacillus sp. Y4.1MC1]
 gi|294978273|gb|EFG53870.1| peptidase S14 ClpP [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216719|gb|ADP75323.1| peptidase S14 ClpP [Geobacillus sp. Y4.1MC1]
          Length = 243

 Score = 50.0 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 60/206 (29%), Gaps = 33/206 (16%)

Query: 43  IRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           I G I           + +I +I  I ++ +   L+V L++ GG   AG AI   +  + 
Sbjct: 50  IEGHIQLPPQNKTTKYEHVIPQIVAIEQNQNIEGLLVILNTVGGDVEAGLAIAEMLASLS 109

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
                I      +      +SC  + I    T  +  I +      V    + L    + 
Sbjct: 110 KPTVSIVLGGGHSIGVPIAVSCDYSFITETATMTIHPIRLTGLVIGVPQTFEYLDKMQER 169

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
           V     K       +             D                          G    
Sbjct: 170 VVRFVTKHSKITEEKFKELMFSKGNLTRDI-------------------------GTNVV 204

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYAL 240
           G +A K GLID VGG  +    L  L
Sbjct: 205 GPDAVKYGLIDEVGGVSKAMNKLREL 230


>gi|143581|gb|AAA22783.1| ORF X [Bacillus subtilis]
          Length = 244

 Score = 50.0 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 70/198 (35%), Gaps = 25/198 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +   KP ++ V     S 
Sbjct: 67  EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASL--SKPTVSIVLGGGHSI 124

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  I+ + +    AETS V    V      +                           ++
Sbjct: 125 GVPIAVSCDYSYIAETSTVTIHPVRLTGLVIGVP-----------------QTFEYLDKM 167

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + V+ +    + +   F  L+    N+  D       G    G +A K GLID  GG 
Sbjct: 168 QERVVKFVTSHSNITEEKFKELMFSKGNLTRDI------GTNVVGKDAVKYGLIDHAGGV 221

Query: 231 EEVWQSLYALGVDQSIRK 248
            +    L  L  +    +
Sbjct: 222 GQAINKLNELIDEARKEE 239


>gi|330817608|ref|YP_004361313.1| hypothetical protein bgla_1g27400 [Burkholderia gladioli BSR3]
 gi|327370001|gb|AEA61357.1| hypothetical protein bgla_1g27400 [Burkholderia gladioli BSR3]
          Length = 366

 Score = 50.0 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 69/192 (35%), Gaps = 39/192 (20%)

Query: 41  IAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           I I G I     D+++   R++ +    SA +++V+++S GG  +    I+  +++   +
Sbjct: 24  IRIYGDIGFWGTDAEQFAARLDEVG--PSAASIVVAVNSMGGDVFDAFTIYNLLRRYPGK 81

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
                 V  +AASA  L+    + IV    +++            +  L +L        
Sbjct: 82  --TTGRVDGIAASAASLLLMGCSQIVMPSNAMLMIHNPHTLAAGDEGELRRLAD------ 133

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215
                                   ++ S+    +   +E      D    L D   W T 
Sbjct: 134 ------------------------LLGSTSANMLTAYAERSGQTEDTVRELMDAETWLTA 169

Query: 216 AEAKKVGLIDVV 227
           A+A ++G  D +
Sbjct: 170 AQAVELGFCDTI 181


>gi|217959640|ref|YP_002338192.1| prophage LambdaBa02, Clp protease family protein [Bacillus cereus
           AH187]
 gi|217067295|gb|ACJ81545.1| prophage LambdaBa02, Clp protease family protein [Bacillus cereus
           AH187]
          Length = 251

 Score = 50.0 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 77/260 (29%), Gaps = 50/260 (19%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSP 76
           +       +   A + I G+I            S      ++ +  D     + + ++SP
Sbjct: 9   FFQMKASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDD--IETINLYINSP 66

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GGS +   AI   +Q+ + +  VI+ +  + AS   ++   S+ I+    S++       
Sbjct: 67  GGSVFETMAIIAMLQRHQAK--VISYIDGIGASCASVLPMISDKIIMYANSMMMIHNAWT 124

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                   L K    I+ +                                    L    
Sbjct: 125 YASGNANQLRKAADDIERINQ----------------------------SMVQHYLTRAG 156

Query: 197 RNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
             +  D    L D   W +  EA   GL D +  +      L         + +K++   
Sbjct: 157 DKLDEDTLKQLLDAETWLSAEEAMNYGLCDEIISENNAAACL-------DEKWMKEYKNV 209

Query: 256 KNYWFCDLKNLSISSLLEDT 275
                    N+  + +LE  
Sbjct: 210 PQQLVNAQANIPSNEMLERQ 229


>gi|119177332|ref|XP_001240455.1| ATP-dependent Clp protease proteolytic subunit [Coccidioides
           immitis RS]
          Length = 237

 Score = 50.0 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 63/195 (32%), Gaps = 31/195 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++++  S  ++ ++  +  D+    + + ++SPGGS  AG AI+  +  +++  
Sbjct: 62  IVCLNGEVDETVSASIVAQLLFLEADNPEKQISLYINSPGGSVTAGLAIYDTMTYIQSPV 121

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L             S V        Y      +            
Sbjct: 122 STICIGQAASMGSLLLCGGEPGKRFCLPHSSVMVHQPSGGYFGQATDIAIHA-------- 173

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
              K       ++N    + +                    +  ++   L +   + G  
Sbjct: 174 ---KEILRVRKQLNEIYRRHLTKD-----------------MSLEEIEKLMERDYFMGAK 213

Query: 217 EAKKVGLIDVVGGQE 231
           EA  +G++D +  + 
Sbjct: 214 EALDMGIVDGIMDRR 228


>gi|13470920|ref|NP_102489.1| ATP-dependent protease proteolytic subunit ClpP-like protein
           [Mesorhizobium loti MAFF303099]
 gi|18202652|sp|Q98M38|CLPP1_RHILO RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|14021663|dbj|BAB48275.1| ATP-dependent protease proteolytic subunit ClpP-like protein
           [Mesorhizobium loti MAFF303099]
          Length = 201

 Score = 50.0 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G+I D     +  ++  +  D+    + + ++SPGG   +G AI+  +Q V    
Sbjct: 33  IIFINGEINDDVSALVCAQLLSLESDNPDKEISLYINSPGGVVTSGFAIYDTMQYVSCPV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L++      +A   + +     L                      
Sbjct: 93  STVCMGFAASMGSFLLMAGTPGRRIALPNATILLHQPLG--------------------- 131

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                      + +        + +  +      L ++     Y++    L      T  
Sbjct: 132 -------GFQGQASDIQRHA--ERIGKTKQRMAELYAQHCGRSYEEVERTLDRDHFMTAR 182

Query: 217 EAKKVGLIDVV 227
           EA+  G++D V
Sbjct: 183 EAQTWGIVDHV 193


>gi|317129147|ref|YP_004095429.1| peptidase S14 ClpP [Bacillus cellulosilyticus DSM 2522]
 gi|315474095|gb|ADU30698.1| peptidase S14 ClpP [Bacillus cellulosilyticus DSM 2522]
          Length = 248

 Score = 50.0 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 75/221 (33%), Gaps = 37/221 (16%)

Query: 37  HVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           ++  + I GQIE              + +I ++    ++     L++ L++ GG   AG 
Sbjct: 44  NIHMLTIIGQIEGHMQLPPQNKTTKYEHIIPQLVAAEQNPKIEGLLIILNTVGGDVEAGL 103

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           A+   I  +   KP +T V     S G  I+ A+N    AET+ +    V      +   
Sbjct: 104 ALSEMISSL--SKPTVTLVLGGGHSIGVPIAVAANYSFIAETATMTIHPVRLTGLVIGVP 161

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
                                   ++  + +  +      S   F  L+    N+  D  
Sbjct: 162 -----------------QTFEYLDKMQDRVINFVTRHSSISEENFKELMLSKGNLTRDI- 203

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
                G    G +A   GLI+ VGG  +  + L  L     
Sbjct: 204 -----GTNVIGKDAVSYGLINEVGGIGQAIKKLNELIEQSK 239


>gi|150007180|ref|YP_001301923.1| putative membrane-bound serine protease [Parabacteroides distasonis
           ATCC 8503]
 gi|255015205|ref|ZP_05287331.1| putative membrane-bound serine protease [Bacteroides sp. 2_1_7]
 gi|298377605|ref|ZP_06987557.1| serine protease, ClpP class [Bacteroides sp. 3_1_19]
 gi|149935604|gb|ABR42301.1| conserved hypothetical protein, putative membrane-bound serine
           protease [Parabacteroides distasonis ATCC 8503]
 gi|298265624|gb|EFI07285.1| serine protease, ClpP class [Bacteroides sp. 3_1_19]
          Length = 459

 Score = 50.0 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 100/270 (37%), Gaps = 27/270 (10%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALI 70
           ++  L  + ++              +  I I+ +I+++  +     +    +  +A A++
Sbjct: 4   LLTILTAIVLILAISLQSEAKEKSLIYTIDIKKEIDNTTWIYLHNGLSEAKQL-NADAIL 62

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + +++ GG   + +++  AI  + +  PV   +   AASAG LIS A   I   + + +G
Sbjct: 63  LHMNTYGGLLESADSMRTAI--LYSPIPVYVFIDNNAASAGALISIACKKIYMRKGANIG 120

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           +  V+ Q     P   +  +      ++  + + +     +                   
Sbjct: 121 AATVVNQTGAALPDKYQSYMRSMIRSTAEAQGKDTLIQNGDTIYKWKRD----------- 169

Query: 191 RLVSESRNIPYDKTLVLSDGR---IWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSI 246
            L++E+          L D       T  EA K G  D +    ++V             
Sbjct: 170 PLIAEAMVDDRVIVPNLIDSGKVLTLTSQEALKWGYCDGIAESPDQVITEYIG----CKD 225

Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
            +IK + P    WF ++K   +S +++  +
Sbjct: 226 YEIKSYEP---SWFDNVKGFFMSPVIQSLL 252


>gi|166031789|ref|ZP_02234618.1| hypothetical protein DORFOR_01490 [Dorea formicigenerans ATCC
           27755]
 gi|166028242|gb|EDR46999.1| hypothetical protein DORFOR_01490 [Dorea formicigenerans ATCC
           27755]
          Length = 228

 Score = 50.0 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 77/231 (33%), Gaps = 37/231 (16%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73
           S      +   +V  + I G+IE              + L+  +  +   +    L++ L
Sbjct: 23  SMKLDSNNRKHNVRLLTIIGEIEGHEAVSGNTKATKYEHLLPMLAEVEDSEEIDGLLILL 82

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           ++ GG   AG +I   I  +      +      +      ++   + IV + T ++  + 
Sbjct: 83  NTMGGDVEAGLSIAEMIASISKPTVSLVLGGSHSIGGPLAVAADYSFIVPSGTMIIHPVR 142

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
               +  V+  L  +  + K +                          + +  H     +
Sbjct: 143 SNGMFIGVQQSLQNMIRTQKRIT-----------------------GFLAAHSHMNEERI 179

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            E    P +    +  G +  G +A + GLID VGG     + L+ +  ++
Sbjct: 180 EELMLNPTELVKDV--GTLLEGEDAVREGLIDEVGGMSHALRKLHQMIDEK 228


>gi|270263570|ref|ZP_06191839.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia
           odorifera 4Rx13]
 gi|270042454|gb|EFA15549.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia
           odorifera 4Rx13]
          Length = 207

 Score = 50.0 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  +     + + ++SPGG   AG +I+  ++ +K   
Sbjct: 42  IIFLTGQVEDHMANLIVAQMLFLEAESPEKDIYLYINSPGGVITAGMSIYDTMKFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A         S V     L  Y      ++           
Sbjct: 102 STICMGQACSMGSFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++E      ++        R  T  
Sbjct: 156 ------------------------ILKVKARMNELMAEHTGQTLEQIERDTERDRFMTAE 191

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 192 EAVEYGLVDGILT 204


>gi|164687878|ref|ZP_02211906.1| hypothetical protein CLOBAR_01523 [Clostridium bartlettii DSM
           16795]
 gi|164603153|gb|EDQ96618.1| hypothetical protein CLOBAR_01523 [Clostridium bartlettii DSM
           16795]
          Length = 217

 Score = 50.0 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 67/199 (33%), Gaps = 30/199 (15%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  ++ D+    +I ++  +  +D    + + ++SPGGS  AG AI+  +Q VK   
Sbjct: 46  IIFLGEEVTDASASVVIAQLLFLEAEDPDKDIYLYINSPGGSVTAGFAIYDTMQHVKCDV 105

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L   A     A   S +     L     ++     + +  +++  
Sbjct: 106 STICIGLAASFGSFLLAGGAKGKRFALPNSQIMIHQPLIGGNGIQGQATDIKIVAENLLK 165

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
           +                                R+++E+     ++           +  
Sbjct: 166 TK---------------------------ERLNRILAENTGKSIEEIYRDTDRDNFMSAQ 198

Query: 217 EAKKVGLIDVVGGQEEVWQ 235
           EA   GLID +  + +  +
Sbjct: 199 EALDYGLIDSIITRSDSIK 217


>gi|49479417|ref|YP_037857.1| translocation-enhancing protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|225865776|ref|YP_002751154.1| clp protease [Bacillus cereus 03BB102]
 gi|228935095|ref|ZP_04097923.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|49330973|gb|AAT61619.1| translocation-enhancing protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|225788341|gb|ACO28558.1| clp protease [Bacillus cereus 03BB102]
 gi|228824565|gb|EEM70369.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 249

 Score = 50.0 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLVLNTVGGDVEAGLAISEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224

Query: 231 EEVWQSLYAL 240
               + L  L
Sbjct: 225 GNAIRKLNEL 234


>gi|228947517|ref|ZP_04109807.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229123310|ref|ZP_04252514.1| Translocation-enhancing protein tepA [Bacillus cereus 95/8201]
 gi|228660086|gb|EEL15722.1| Translocation-enhancing protein tepA [Bacillus cereus 95/8201]
 gi|228812037|gb|EEM58368.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 249

 Score = 50.0 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLVLNTVGGDVEAGLAISEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224

Query: 231 EEVWQSLYAL 240
               + L  L
Sbjct: 225 GNAIRKLNEL 234


>gi|182417589|ref|ZP_02948911.1| Clp protease [Clostridium butyricum 5521]
 gi|237667767|ref|ZP_04527751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378544|gb|EDT76073.1| Clp protease [Clostridium butyricum 5521]
 gi|237656115|gb|EEP53671.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 201

 Score = 50.0 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D+    ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +    
Sbjct: 29  IIMLSGEVNDASAQLIVAQLLFLDSEDPDKDISLYINSPGGSVTAGMAIYDTMQLINADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     A   + +     L  +      ++     +  VK 
Sbjct: 89  STICVGMAASMGAFLLSCGAKGKRYALPNAEIMIHQPLGGFQGQVTDIEIHANRMLKVKE 148

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
              K                                SE+   P +            +  
Sbjct: 149 VLNKTL------------------------------SENTGKPLEVIQRDTERDNFMSAE 178

Query: 217 EAKKVGLIDVV 227
           +AK+ GL+D +
Sbjct: 179 DAKEYGLVDEI 189


>gi|146295915|ref|YP_001179686.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|166201809|sp|A4XHW0|CLPP_CALS8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|145409491|gb|ABP66495.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 195

 Score = 50.0 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 65/191 (34%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I D     ++ ++  +  +D    + + ++SPGGS  AG AI+  IQ +K   
Sbjct: 30  IVILSGEITDDIASLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGFAIYDTIQYIKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   S +     +                      
Sbjct: 90  STICVGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPIGGVRGQ---------------- 133

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            +++  + +        R+++E    P +     ++   + T  
Sbjct: 134 --------------ATDIKIHAEWILKIKQRINRILAERTGQPIEVIERDTERDFFMTAE 179

Query: 217 EAKKVGLIDVV 227
           EA K G+ID V
Sbjct: 180 EALKYGIIDKV 190


>gi|255023331|ref|ZP_05295317.1| exfoliative toxin [Listeria monocytogenes FSL J1-208]
          Length = 138

 Score = 50.0 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 36/82 (43%), Gaps = 14/82 (17%)

Query: 31  VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76
            E     +A +++ G I+D+ +               ++++E++  DD    +++ ++SP
Sbjct: 56  EEGGDDTIAVLSVDGTIQDTGDSGSLLGGGGYDHSFFMQQLEQVRNDDYIQGVLLYVNSP 115

Query: 77  GGSAYAGEAIFRAIQKVKNRKP 98
           GG       I   I +++  + 
Sbjct: 116 GGGVMESAQIRDKILQIQKERN 137


>gi|319783748|ref|YP_004143224.1| endopeptidase Clp [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169636|gb|ADV13174.1| Endopeptidase Clp [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 201

 Score = 50.0 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G+I D     +  ++  +  D+    + + ++SPGG   +G AI+  +Q +    
Sbjct: 33  IIFINGEINDDISALVCAQLLSLESDNPDKEISLYINSPGGVVTSGFAIYDTMQYISCPV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L++      ++   + +     L                      
Sbjct: 93  STVCMGFAASMGSFLLMAGTPGRRISLPNATILLHQPLG--------------------- 131

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                      + +        + +  +      L ++     Y++    L      T  
Sbjct: 132 -------GFQGQASDIQRHA--ERIGRTKRHMTELYAQHCGRTYEEVERTLDRDHFMTAR 182

Query: 217 EAKKVGLIDVV 227
           EA+  G++D V
Sbjct: 183 EAQAWGIVDHV 193


>gi|221309558|ref|ZP_03591405.1| TepA [Bacillus subtilis subsp. subtilis str. 168]
 gi|221318805|ref|ZP_03600099.1| TepA [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221323077|ref|ZP_03604371.1| TepA [Bacillus subtilis subsp. subtilis str. SMY]
          Length = 245

 Score = 50.0 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 69/198 (34%), Gaps = 25/198 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +   KP ++ V     S 
Sbjct: 68  EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASL--SKPTVSIVLGGGHSI 125

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  I+ + +    AET  V    V      +                           ++
Sbjct: 126 GVPIAVSCDYSYIAETGTVTIHPVRLTGLVIGVP-----------------QTFEYLDKM 168

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + V+ +    + +   F  L+    N+  D       G    G +A K GLID  GG 
Sbjct: 169 QERVVKFVTSHSNITEEKFKELMFSKGNLTRDI------GTNVVGKDAVKYGLIDHAGGV 222

Query: 231 EEVWQSLYALGVDQSIRK 248
            +    L  L  +    +
Sbjct: 223 GQAINKLNELIDEARKEE 240


>gi|42782881|ref|NP_980128.1| hypothetical protein BCE_3831 [Bacillus cereus ATCC 10987]
 gi|42738808|gb|AAS42736.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gi|324327690|gb|ADY22950.1| hypothetical protein YBT020_18610 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 249

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLVLNTVGGDVEAGLAISEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224

Query: 231 EEVWQSLYAL 240
               + L  L
Sbjct: 225 GNAIRKLNEL 234


>gi|52141692|ref|YP_085137.1| translocation-enhancing protein [Bacillus cereus E33L]
 gi|118479016|ref|YP_896167.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           thuringiensis str. Al Hakam]
 gi|196034190|ref|ZP_03101600.1| clp protease [Bacillus cereus W]
 gi|196038350|ref|ZP_03105659.1| clp protease [Bacillus cereus NVH0597-99]
 gi|196044682|ref|ZP_03111917.1| clp protease [Bacillus cereus 03BB108]
 gi|206978174|ref|ZP_03239055.1| clp protease [Bacillus cereus H3081.97]
 gi|217961217|ref|YP_002339785.1| clp protease [Bacillus cereus AH187]
 gi|218904924|ref|YP_002452758.1| clp protease [Bacillus cereus AH820]
 gi|222097242|ref|YP_002531299.1| translocation-enhancing protein [Bacillus cereus Q1]
 gi|228916434|ref|ZP_04080001.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228928846|ref|ZP_04091878.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229092838|ref|ZP_04223972.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-42]
 gi|229140438|ref|ZP_04268993.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-ST26]
 gi|229186034|ref|ZP_04313204.1| Translocation-enhancing protein tepA [Bacillus cereus BGSC 6E1]
 gi|229197907|ref|ZP_04324623.1| Translocation-enhancing protein tepA [Bacillus cereus m1293]
 gi|301055286|ref|YP_003793497.1| peptidase S14 ClpP [Bacillus anthracis CI]
 gi|51975161|gb|AAU16711.1| translocation-enhancing protein [Bacillus cereus E33L]
 gi|118418241|gb|ABK86660.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           thuringiensis str. Al Hakam]
 gi|195993264|gb|EDX57222.1| clp protease [Bacillus cereus W]
 gi|196024717|gb|EDX63389.1| clp protease [Bacillus cereus 03BB108]
 gi|196030758|gb|EDX69356.1| clp protease [Bacillus cereus NVH0597-99]
 gi|206743591|gb|EDZ55017.1| clp protease [Bacillus cereus H3081.97]
 gi|217066012|gb|ACJ80262.1| clp protease [Bacillus cereus AH187]
 gi|218538614|gb|ACK91012.1| clp protease [Bacillus cereus AH820]
 gi|221241300|gb|ACM14010.1| translocation-enhancing protein [Bacillus cereus Q1]
 gi|228585625|gb|EEK43727.1| Translocation-enhancing protein tepA [Bacillus cereus m1293]
 gi|228597453|gb|EEK55103.1| Translocation-enhancing protein tepA [Bacillus cereus BGSC 6E1]
 gi|228642999|gb|EEK99275.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-ST26]
 gi|228690460|gb|EEL44243.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-42]
 gi|228830653|gb|EEM76258.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228843237|gb|EEM88318.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300377455|gb|ADK06359.1| peptidase S14 ClpP [Bacillus cereus biovar anthracis str. CI]
          Length = 249

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLVLNTVGGDVEAGLAISEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224

Query: 231 EEVWQSLYAL 240
               + L  L
Sbjct: 225 GNAIRKLNEL 234


>gi|296807623|ref|XP_002844228.1| ATP-dependent Clp protease proteolytic subunit [Arthroderma otae
           CBS 113480]
 gi|238843711|gb|EEQ33373.1| ATP-dependent Clp protease proteolytic subunit [Arthroderma otae
           CBS 113480]
          Length = 238

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 66/195 (33%), Gaps = 30/195 (15%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++++S    ++ ++  +  D+    + + ++SPGGS  AG AI+  +  +++  
Sbjct: 62  IVCLNGEVDESLSAAIVAQLLFLEADNPEKPIQLYINSPGGSVTAGLAIYDTMTYIQSPV 121

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L    +        S +        Y      +            
Sbjct: 122 STICVGQAASMGSLLLCGGEAGKRYCLPHSSIMIHQPSGGYFGQATDIAIHA-------- 173

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
              K       ++N    + +                  + +  ++   L +   + G  
Sbjct: 174 ---KEILRVRHQLNQIYKRHL----------------TGKEMTLEEIEKLMERDYFMGAK 214

Query: 217 EAKKVGLIDVVGGQE 231
           EA ++G++D +  + 
Sbjct: 215 EALEMGIVDSILDRR 229


>gi|221313882|ref|ZP_03595687.1| TepA [Bacillus subtilis subsp. subtilis str. NCIB 3610]
          Length = 245

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 63/198 (31%), Gaps = 25/198 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +      I          
Sbjct: 68  EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSI---------- 117

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
                      +    ++      + +   V     +L   +  V             ++
Sbjct: 118 ----VLGGGHSIGVPIAVSCDYSYIAETATVTIHPVRLTGLVIGVP-----QTFEYLDKM 168

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + V+ +    + +   F  L+    N+  D       G    G +A K GLID  GG 
Sbjct: 169 QERVVKFVTSHSNITEEKFKELMFSKGNLTRDI------GTNVVGKDAVKYGLIDHAGGV 222

Query: 231 EEVWQSLYALGVDQSIRK 248
            +    L  L  +    +
Sbjct: 223 GQAINKLNELIDEARKEE 240


>gi|152976162|ref|YP_001375679.1| peptidase S14 ClpP [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152024914|gb|ABS22684.1| peptidase S14 ClpP [Bacillus cytotoxicus NVH 391-98]
          Length = 250

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 64/190 (33%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSYIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224

Query: 231 EEVWQSLYAL 240
            +  Q L AL
Sbjct: 225 GDAIQKLNAL 234


>gi|147677625|ref|YP_001211840.1| protease subunit of ATP-dependent Clp proteases [Pelotomaculum
           thermopropionicum SI]
 gi|146273722|dbj|BAF59471.1| protease subunit of ATP-dependent Clp proteases [Pelotomaculum
           thermopropionicum SI]
          Length = 286

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 56/198 (28%), Gaps = 25/198 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  + +      +++ L++ GG   AG AI   I  +      +      +   
Sbjct: 102 EHVIPQLVALEQAPEVEGILIVLNTVGGDVEAGLAIAEVIASISKPTVSVVLGGGHSIGV 161

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +    + I A  +  +  I +      V    + L      V               
Sbjct: 162 PIAVGAQYSFIAATASMTIHPIRLNGLVIGVPQTYEYLDKMQDRVVR------------- 208

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                               R +                G +  G EA +VGLID VGG 
Sbjct: 209 -------FVVEHSKISEEKFRELMFRTGELARDI-----GTVLIGREAVEVGLIDAVGGV 256

Query: 231 EEVWQSLYALGVDQSIRK 248
            E    L  +   Q   +
Sbjct: 257 GEAVARLKNMIEGQKKER 274


>gi|158520037|ref|YP_001527907.1| hypothetical protein Dole_0020 [Desulfococcus oleovorans Hxd3]
 gi|158508863|gb|ABW65830.1| protein of unknown function DUF107 [Desulfococcus oleovorans Hxd3]
          Length = 488

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 85/297 (28%), Gaps = 24/297 (8%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD---D 64
           +K  +++  L+       +       ++  V  + + G +     +   ++R   D    
Sbjct: 1   MKRLFLIFCLLVSGFFLVAPGPVSAGDAHTVYVVKVAGDVAPG--MAAYLKRALDDIPEA 58

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
               +++ L + GG   +   I   I    ++   I  V   A SAG LI+ A N +V  
Sbjct: 59  PHQTIVLDLDTFGGRVDSALMIVDLITAADSKGKTIAFVSRKAISAGALIALACNELVMK 118

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             + +G    +         L +   S    K   +  +      +    V    +V   
Sbjct: 119 PGTTIGDCAPIMVGSQGPEMLGEKFQSPLRAKFRALAKKNGYPEALAESMVTADMEVFRV 178

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV----------- 233
                     ++  + Y++        + +       G    +   +++           
Sbjct: 179 VTKDGGTFYMDA--LEYEEMDEAQKSAVVSKKTVVAKG---ELLTMDDIEARDLGFSQMT 233

Query: 234 ---WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
               + + A         +             L  L+   +L     L  + K  G 
Sbjct: 234 VSSVKEMLAAMGIDDTDIVVMEQQWSEGLMRWLGTLAPLLMLIGLGALYTEIKSPGF 290


>gi|89101082|ref|ZP_01173920.1| TepA [Bacillus sp. NRRL B-14911]
 gi|89084194|gb|EAR63357.1| TepA [Bacillus sp. NRRL B-14911]
          Length = 256

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 62/198 (31%), Gaps = 25/198 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + LI +I  I ++     L+V L++ GG   AG AI   +  +      I          
Sbjct: 79  EHLIPQIVAIEQNPKIEGLLVILNTVGGDVEAGLAISEMLASLSKPTVSI---------- 128

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
                      +    ++      + +   +     +L   +  V             ++
Sbjct: 129 ----VLGGGHSIGVPIAVSCDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 179

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + +  +      S   F  L+    N+  D       G    GA+A   GLID VGG 
Sbjct: 180 QDRVINFVTGHSKVSEQQFKDLMFAKGNLTRDI------GTNVVGADAVSYGLIDAVGGV 233

Query: 231 EEVWQSLYALGVDQSIRK 248
               + L  L      ++
Sbjct: 234 GPALKKLNELIDLNKGKE 251


>gi|326482374|gb|EGE06384.1| ATP-dependent Clp protease proteolytic subunit [Trichophyton
           equinum CBS 127.97]
          Length = 223

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 66/195 (33%), Gaps = 30/195 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++++  S  ++ ++  +  D+    + + ++SPGGS  AG AI+  +  +++  
Sbjct: 46  IVCLNGEVDETLSAAIVAQLLFLEADNPEKPIQLYINSPGGSVTAGLAIYDTMTYIQSPV 105

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L    +        S V        Y      +            
Sbjct: 106 STICVGQAASMGSLLLCGGEAGKRYCLPHSSVMIHQPSGGYFGQATDIAIHA-------- 157

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
              K       ++N    + +                  + +  ++   L +   + G  
Sbjct: 158 ---KEILRVRHQLNQIYKRHL----------------TGKEMTLEEIEKLMERDYFMGAK 198

Query: 217 EAKKVGLIDVVGGQE 231
           EA ++G++D +  + 
Sbjct: 199 EALEMGIVDSILDRR 213


>gi|327292805|ref|XP_003231100.1| ATP-dependent Clp protease [Trichophyton rubrum CBS 118892]
 gi|326466730|gb|EGD92183.1| ATP-dependent Clp protease [Trichophyton rubrum CBS 118892]
          Length = 223

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 66/195 (33%), Gaps = 30/195 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++++  S  ++ ++  +  D+    + + ++SPGGS  AG AI+  +  +++  
Sbjct: 46  IVCLNGEVDETLSAAIVAQLLFLEADNPEKPIQLYINSPGGSVTAGLAIYDTMTYIQSPV 105

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L    +        S V        Y      +            
Sbjct: 106 STICVGQAASMGSLLLCGGEAGKRYCLPHSSVMIHQPSGGYFGQATDIAIHA-------- 157

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
              K       ++N    + +                  + +  ++   L +   + G  
Sbjct: 158 ---KEILRVRHQLNQIYKRHL----------------TGKEMTLEEIEKLMERDYFMGAK 198

Query: 217 EAKKVGLIDVVGGQE 231
           EA ++G++D +  + 
Sbjct: 199 EALEMGIVDSILDRR 213


>gi|325092382|gb|EGC45692.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           capsulatus H88]
          Length = 229

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/195 (11%), Positives = 62/195 (31%), Gaps = 31/195 (15%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++++S    ++ ++  +  D+    + + ++SPGGS  AG A++  +  +    
Sbjct: 47  IVCLNGEVDESLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISAPV 106

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L             S V        Y                   
Sbjct: 107 STICVGQAASMGSLLLCGGHPGKRYCLPHSSVMVHQPSGGYFGQA--------------- 151

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
                           A+   + +        +  +  ++ +  D+     +   + G  
Sbjct: 152 -------------TDIAIHAKEILRVRRQLNEIYKMHLTKEMSLDEIEKWMERDYFMGAR 198

Query: 217 EAKKVGLIDVVGGQE 231
           EA ++G++D +  + 
Sbjct: 199 EALEMGIVDEILDRR 213


>gi|294500881|ref|YP_003564581.1| translocation-enhancing protein TepA [Bacillus megaterium QM B1551]
 gi|295706227|ref|YP_003599302.1| translocation-enhancing protein TepA [Bacillus megaterium DSM 319]
 gi|294350818|gb|ADE71147.1| translocation-enhancing protein TepA [Bacillus megaterium QM B1551]
 gi|294803886|gb|ADF40952.1| translocation-enhancing protein TepA [Bacillus megaterium DSM 319]
          Length = 250

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 64/190 (33%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   I  +      I      +   
Sbjct: 73  EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMIASLSKPSVSIVLGGGHSIGV 132

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +S   + I    T  +  I +      V    + L                    ++
Sbjct: 133 PIAVSTDYSYIAGTATMTIHPIRLTGLVIGVPQTFEYLD-------------------KM 173

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + +  +++    S   F  L+    N+  D       G    G +A   GLI+ VGG 
Sbjct: 174 QERVINFVREHSHISEEKFKELMFSKGNLTRDI------GTNVVGGDAVSYGLINEVGGV 227

Query: 231 EEVWQSLYAL 240
            +  + L  L
Sbjct: 228 AQAIKKLNEL 237


>gi|240281120|gb|EER44623.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           capsulatus H143]
          Length = 229

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/195 (11%), Positives = 62/195 (31%), Gaps = 31/195 (15%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++++S    ++ ++  +  D+    + + ++SPGGS  AG A++  +  +    
Sbjct: 47  IVCLNGEVDESLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISAPV 106

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L             S V        Y                   
Sbjct: 107 STICVGQAASMGSLLLCGGHPGKRYCLPHSSVMVHQPSGGYFGQA--------------- 151

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
                           A+   + +        +  +  ++ +  D+     +   + G  
Sbjct: 152 -------------TDIAIHAKEILRVRRQLNEIYKMHLTKEMSLDEIEKWMERDYFMGAR 198

Query: 217 EAKKVGLIDVVGGQE 231
           EA ++G++D +  + 
Sbjct: 199 EALEMGIVDEILDRR 213


>gi|225562415|gb|EEH10694.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           capsulatus G186AR]
          Length = 229

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/195 (11%), Positives = 62/195 (31%), Gaps = 31/195 (15%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++++S    ++ ++  +  D+    + + ++SPGGS  AG A++  +  +    
Sbjct: 47  IVCLNGEVDESLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISAPV 106

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L             S V        Y                   
Sbjct: 107 STICVGQAASMGSLLLCGGHPGKRYCLPHSSVMVHQPSGGYFGQA--------------- 151

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
                           A+   + +        +  +  ++ +  D+     +   + G  
Sbjct: 152 -------------TDIAIHAKEILRVRRQLNEIYKMHLTKEMSLDEIEKWMERDYFMGAR 198

Query: 217 EAKKVGLIDVVGGQE 231
           EA ++G++D +  + 
Sbjct: 199 EALEMGIVDEILDRR 213


>gi|154279296|ref|XP_001540461.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           capsulatus NAm1]
 gi|150412404|gb|EDN07791.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           capsulatus NAm1]
          Length = 211

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/195 (11%), Positives = 62/195 (31%), Gaps = 31/195 (15%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++++S    ++ ++  +  D+    + + ++SPGGS  AG A++  +  +    
Sbjct: 29  IVCLNGEVDESLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISAPV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L             S V        Y                   
Sbjct: 89  STICVGQAASMGSLLLCGGHPGKRYCLPHSSVMVHQPSGGYFGQA--------------- 133

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
                           A+   + +        +  +  ++ +  D+     +   + G  
Sbjct: 134 -------------TDIAIHAKEILRVRRQLNEIYKMHLTKEMSLDEIEKWMERDYFMGAR 180

Query: 217 EAKKVGLIDVVGGQE 231
           EA ++G++D +  + 
Sbjct: 181 EALEMGIVDEILDRR 195


>gi|313891581|ref|ZP_07825191.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Dialister microaerophilus UPII 345-E]
 gi|313120040|gb|EFR43222.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Dialister microaerophilus UPII 345-E]
          Length = 199

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 62/200 (31%), Gaps = 33/200 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQIED  +  +I ++  +  +D    + + ++SPGG   AG AI+  +Q ++   
Sbjct: 29  IIFLDGQIEDHMANVIIAQLLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMQYIRPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L S A     A   S V     L         ++           
Sbjct: 89  STICIGSCASMAAVLLTSGAKGKRFALPHSNVMIHQPLGGVQGQATEIEIHARE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                                   +         ++++      D            T  
Sbjct: 143 ------------------------ILRLRDELNGILAKHTGQSLDVIKKDTERDNFMTAE 178

Query: 217 EAKKVGLIDVVGGQEEVWQS 236
            A K GLID +  + E+   
Sbjct: 179 NALKYGLIDKILTRNELTAK 198


>gi|302673690|ref|XP_003026531.1| hypothetical protein SCHCODRAFT_86223 [Schizophyllum commune H4-8]
 gi|300100214|gb|EFI91628.1| hypothetical protein SCHCODRAFT_86223 [Schizophyllum commune H4-8]
          Length = 245

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/190 (12%), Positives = 58/190 (30%), Gaps = 24/190 (12%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G I D+    ++ ++  +  ++++  + + ++SPGGS  AG AI+  +Q V +  
Sbjct: 69  VVMLYGPIRDTDSALIVSQLLFLEAEETSKPIHLYINSPGGSVTAGLAIYDTMQYVSSPI 128

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L +           + +               +      I  V+ 
Sbjct: 129 HTYCIGCAASMGSLLLAAGEKGKRHCLPNASIMIHQPSGGASGQASDVAIHAKEILRVRE 188

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
           +         ++ +    + +                            L      T  E
Sbjct: 189 ALTGIYQKHCAKPDESEAEGLARFE----------------------RALERDYFMTAKE 226

Query: 218 AKKVGLIDVV 227
           A   G++D +
Sbjct: 227 AIDFGIVDGI 236


>gi|256026839|ref|ZP_05440673.1| putative Clp protease [Fusobacterium sp. D11]
 gi|289764832|ref|ZP_06524210.1| hypothetical protein PSAG_00434 [Fusobacterium sp. D11]
 gi|289716387|gb|EFD80399.1| hypothetical protein PSAG_00434 [Fusobacterium sp. D11]
          Length = 370

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 80/246 (32%), Gaps = 46/246 (18%)

Query: 30  HVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGS 79
            +++ S ++A I I G I            S    + ++++    + + + + ++SPGG 
Sbjct: 11  EIKNLSENIAEIRIYGTITKWAWEEYGEVSSANFAKELQKL---KNISHINLRVNSPGGD 67

Query: 80  AYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
            +   AI+  ++     N   +   +  +AASA   +   +  ++    +L      L  
Sbjct: 68  VFEASAIYNLLKDYAKVNNIEITGYIDGLAASAASFLVLCATKVIMGTGALYMIHNPLTS 127

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
                  L K    + +VK                                 + +     
Sbjct: 128 AYGNAEKLKKQIELLDTVK------------------------------EAILDIYCTKS 157

Query: 198 NIPYDKTLVLSDGRIWT-GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
            +  ++     +G  W   +EA + G +D +   +   +++  +  +  I    + +  K
Sbjct: 158 KLSREEISEKMNGEKWYRASEALEAGFVDEIVENDNSLENIKNISNELHIENFINQDLLK 217

Query: 257 NYWFCD 262
                 
Sbjct: 218 EKLKEI 223


>gi|229146367|ref|ZP_04274738.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-ST24]
 gi|296504293|ref|YP_003665993.1| translocation-enhancing protein TepA [Bacillus thuringiensis
           BMB171]
 gi|228637000|gb|EEK93459.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-ST24]
 gi|296325345|gb|ADH08273.1| translocation-enhancing protein tepA [Bacillus thuringiensis
           BMB171]
          Length = 249

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 64/197 (32%), Gaps = 25/197 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224

Query: 231 EEVWQSLYALGVDQSIR 247
               + L  L   ++  
Sbjct: 225 GNAIRKLNELIDVRAED 241


>gi|90419399|ref|ZP_01227309.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336336|gb|EAS50077.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 210

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 33/200 (16%)

Query: 40  RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G IEDS   +   ++  +  ++    + + ++SPGG   +G AI+  +Q +K   
Sbjct: 37  VIFITGPIEDSMATLVCAQLLFLEAENPKKEIALYINSPGGVVTSGMAIYDTMQFIKPAV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      AAS G L+ CA +  +    +    I V             +    + +  
Sbjct: 97  STLCIGQ--AASMGSLLLCAGHKDMRFA-TPNARIMVHQPSGGFSGQASDIERHAQDIIK 153

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                                             +  E     Y+     L      T  
Sbjct: 154 LK---------------------------RRLNEVYVEHTGQDYETVERTLDRDHFMTAQ 186

Query: 217 EAKKVGLIDVVGGQEEVWQS 236
           EA++ GLID V    +  ++
Sbjct: 187 EAREFGLIDKVYSSRDALEA 206


>gi|229117283|ref|ZP_04246661.1| Translocation-enhancing protein tepA [Bacillus cereus Rock1-3]
 gi|228666183|gb|EEL21647.1| Translocation-enhancing protein tepA [Bacillus cereus Rock1-3]
          Length = 249

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAIAEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224

Query: 231 EEVWQSLYAL 240
               Q L  L
Sbjct: 225 GSALQKLNEL 234


>gi|315042532|ref|XP_003170642.1| ATP-dependent Clp protease proteolytic subunit [Arthroderma gypseum
           CBS 118893]
 gi|311344431|gb|EFR03634.1| ATP-dependent Clp protease proteolytic subunit [Arthroderma gypseum
           CBS 118893]
          Length = 222

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 66/195 (33%), Gaps = 30/195 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++++  S  ++ ++  +  D+    + + ++SPGGS  AG AI+  +  +++  
Sbjct: 46  IVCLNGEVDETLSAAIVAQLLFLEADNPEKPIQLYINSPGGSVTAGLAIYDTMTYIQSPV 105

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L    +        S V        Y      +            
Sbjct: 106 STICVGQAASMGSLLLCGGEAGKRYCLPHSSVMIHQPSGGYFGQATDIAIHA-------- 157

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
              K       ++N    + +                  + +  D+   L +   + G  
Sbjct: 158 ---KEILRVRHQLNQIYKRHL----------------TGKEMTLDEIEKLMERDYFMGAK 198

Query: 217 EAKKVGLIDVVGGQE 231
           EA ++G++D +  + 
Sbjct: 199 EALEMGIVDSILDRR 213


>gi|119492479|ref|XP_001263605.1| Clp protease, putative [Neosartorya fischeri NRRL 181]
 gi|119411765|gb|EAW21708.1| Clp protease, putative [Neosartorya fischeri NRRL 181]
          Length = 175

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 52/183 (28%), Gaps = 27/183 (14%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           S  ++ ++  +  D+    + + ++SPGGS  AG AI+  +  + +    I      +  
Sbjct: 2   SASIVAQLLFLEADNPQKPIHLYINSPGGSVTAGLAIYDTMTYIASPVSTICVGQAASMG 61

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           +  L             S +                                        
Sbjct: 62  SLLLCGGNPGKRYCLPHSSIMIHQPSG---------------------GYFGQASDIAIH 100

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-AEAKKVGLIDVVG 228
                    Q       H   + V     +  ++   L +   + G  EA ++G++D + 
Sbjct: 101 AKEILRVRSQLNKIYQRHLTGKKV-----LSLEEIEKLMERDYFMGAQEALEMGIVDEIL 155

Query: 229 GQE 231
            + 
Sbjct: 156 DRR 158


>gi|171692433|ref|XP_001911141.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946165|emb|CAP72966.1| unnamed protein product [Podospora anserina S mat+]
          Length = 254

 Score = 49.6 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 63/190 (33%), Gaps = 24/190 (12%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G I+D  S  ++ ++  +  D+    + + ++SPGG   +G AI+  +  +K+  
Sbjct: 66  IVCLNGAIDDTVSASIVAQLLWLESDNPDKPITMYINSPGGEVSSGLAIYDTMTYIKSPV 125

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      + +A  LI        A   S +     L         +      I+ ++ 
Sbjct: 126 STVCVGGAASMAAILLIGGEPGKRYALPHSSIMVHQPLGGTRGQASDILIYANQIQRLRD 185

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
              K   S  ++        MQ + D                              T  E
Sbjct: 186 QINKIVQSHINKSFGFEKYDMQAINDMMERDKY----------------------LTAEE 223

Query: 218 AKKVGLIDVV 227
           AK  G+ID +
Sbjct: 224 AKDFGIIDEI 233


>gi|299471219|emb|CBN79074.1| chloroplast clp protease P [Ectocarpus siliculosus]
          Length = 292

 Score = 49.6 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 57/178 (32%), Gaps = 31/178 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           L+ ++  ++ DD    + + ++SPGGS  AG AI+ A+Q V      +      +  A  
Sbjct: 127 LVAQLLYLANDDPDKDITLYINSPGGSVSAGMAIYDAMQYVPCDVSTVCFGTAASMGAFL 186

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     +   + +     L         ++     I  +                 
Sbjct: 187 LGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFI----------------- 229

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGG 229
                               ++E  + P DK     D   + T  EA   GLID V  
Sbjct: 230 -------------RSLLNSYMAEYCDQPADKIQDDCDRDFFMTPEEAMDYGLIDEVVT 274


>gi|255647414|gb|ACU24172.1| unknown [Glycine max]
          Length = 238

 Score = 49.6 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G I D     ++ ++  +  ++S+  + + L+SPGG+  AG AI+  +Q +++  
Sbjct: 55  IICINGPISDDTAHVVVAQLLFLESENSSKPINMYLNSPGGAVTAGLAIYDTMQYIRSPV 114

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     +   + +        Y                   
Sbjct: 115 NTICMGQAASMGSLLLAAGAKGERRSLPNATIMIHQPSGGYSGQ---------------- 158

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                          K + +    +   +     L ++      +     +      T  
Sbjct: 159 --------------AKDIAIHTKHIVRVWDSLNELYAKHTGQSVEVIQTNMDRDNFMTPK 204

Query: 217 EAKKVGLIDVVGG 229
           EAK+ GLID V  
Sbjct: 205 EAKEFGLIDEVID 217


>gi|237738529|ref|ZP_04569010.1| protease IV [Fusobacterium sp. 2_1_31]
 gi|229424227|gb|EEO39274.1| protease IV [Fusobacterium sp. 2_1_31]
          Length = 232

 Score = 49.6 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 60/154 (38%), Gaps = 3/154 (1%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
            ++ +E +  D     +I+ +     S    E I    +K+   K +I         +  
Sbjct: 73  TLKALENLVDDKKIEKIIIDVDEVDLSRVHIEEIKEIFKKLSVDKEIIAIGTTFDEYSYQ 132

Query: 113 LISCASNIIVAA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSE 169
           +   A  I +   + S +   G  ++ PY K  L  LGV++ ++     K   E     +
Sbjct: 133 IALLADKIYMLNTKQSCLYFRGYEYKEPYFKNVLATLGVTVNTLHIGDYKVAGESFSHDK 192

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           +  +  + + ++ ++ +  F+ LV E R I    
Sbjct: 193 MTEEKKESLMNIKETLFQNFINLVKEKRKIDITN 226


>gi|75764280|ref|ZP_00743823.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218898895|ref|YP_002447306.1| clp protease [Bacillus cereus G9842]
 gi|228902298|ref|ZP_04066457.1| Translocation-enhancing protein tepA [Bacillus thuringiensis IBL
           4222]
 gi|228909621|ref|ZP_04073444.1| Translocation-enhancing protein tepA [Bacillus thuringiensis IBL
           200]
 gi|228966741|ref|ZP_04127785.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|74488232|gb|EAO51905.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218544679|gb|ACK97073.1| clp protease [Bacillus cereus G9842]
 gi|228792840|gb|EEM40398.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228849910|gb|EEM94741.1| Translocation-enhancing protein tepA [Bacillus thuringiensis IBL
           200]
 gi|228857335|gb|EEN01836.1| Translocation-enhancing protein tepA [Bacillus thuringiensis IBL
           4222]
          Length = 249

 Score = 49.6 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 64/196 (32%), Gaps = 25/196 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224

Query: 231 EEVWQSLYALGVDQSI 246
               + L  L   ++ 
Sbjct: 225 GNAIRKLNELIDVRAE 240


>gi|312898487|ref|ZP_07757877.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Megasphaera
           micronuciformis F0359]
 gi|310620406|gb|EFQ03976.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Megasphaera
           micronuciformis F0359]
          Length = 202

 Score = 49.6 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 58/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D  +  +I ++  +  D+    + + ++SPGG   AG AI+  ++ +K   
Sbjct: 31  IIFLTGAIDDTVANSVIAQLLFLEADNPDKDIHLYINSPGGVVTAGMAIYDTMRYIKPDV 90

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++  L +       A   S V     L         ++           
Sbjct: 91  STICVGSAASMASVLLTAGTKGKRFALPHSQVMIHQPLGGVQGQASDIEIHARE------ 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                                   +         +++     P D            T  
Sbjct: 145 ------------------------ILRMRKELNGILATHTGQPVDVIEKDTERDNFMTAE 180

Query: 217 EAKKVGLIDVV 227
           EAK  GL+D +
Sbjct: 181 EAKAYGLVDEI 191


>gi|196019855|ref|XP_002119057.1| hypothetical protein TRIADDRAFT_63023 [Trichoplax adhaerens]
 gi|190577146|gb|EDV18457.1| hypothetical protein TRIADDRAFT_63023 [Trichoplax adhaerens]
          Length = 215

 Score = 49.6 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 7/119 (5%)

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
           +   +  + +Q+ +D  +  F  L+   R  P      +S G  W G++AK++ L+D + 
Sbjct: 6   KNTEEGRKKVQEELDQIHSEFKNLIKLKR--PSIDIEKISTGEFWLGSKAKELKLVDEIM 63

Query: 229 GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
              +   SLY        +++      +   F +    SI    E  I +       GL
Sbjct: 64  TSADYLTSLYQ-----DNKQVYFVKYERKISFLEKLENSIGLSKETVIDVESSRSFLGL 117


>gi|229031427|ref|ZP_04187427.1| Translocation-enhancing protein tepA [Bacillus cereus AH1271]
 gi|228729716|gb|EEL80696.1| Translocation-enhancing protein tepA [Bacillus cereus AH1271]
          Length = 249

 Score = 49.6 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224

Query: 231 EEVWQSLYAL 240
               + L  L
Sbjct: 225 GNAIRKLNEL 234


>gi|229162732|ref|ZP_04290689.1| Translocation-enhancing protein tepA [Bacillus cereus R309803]
 gi|228620614|gb|EEK77483.1| Translocation-enhancing protein tepA [Bacillus cereus R309803]
          Length = 249

 Score = 49.6 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224

Query: 231 EEVWQSLYAL 240
               + L  L
Sbjct: 225 GSALRKLNEL 234


>gi|229191921|ref|ZP_04318891.1| Translocation-enhancing protein tepA [Bacillus cereus ATCC 10876]
 gi|228591472|gb|EEK49321.1| Translocation-enhancing protein tepA [Bacillus cereus ATCC 10876]
          Length = 249

 Score = 49.6 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 64/197 (32%), Gaps = 25/197 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224

Query: 231 EEVWQSLYALGVDQSIR 247
               + L  L   ++  
Sbjct: 225 GNAIRKLNELIDVRAED 241


>gi|326475380|gb|EGD99389.1| ATP-dependent Clp protease [Trichophyton tonsurans CBS 112818]
          Length = 246

 Score = 49.2 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 66/195 (33%), Gaps = 30/195 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++++  S  ++ ++  +  D+    + + ++SPGGS  AG AI+  +  +++  
Sbjct: 69  IVCLNGEVDETLSAAIVAQLLFLEADNPEKPIQLYINSPGGSVTAGLAIYDTMTYIQSPV 128

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L    +        S V        Y      +            
Sbjct: 129 STICVGQAASMGSLLLCGGEAGKRYCLPHSSVMIHQPSGGYFGQATDIAIHA-------- 180

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
              K       ++N    + +                  + +  ++   L +   + G  
Sbjct: 181 ---KEILRVRHQLNQIYKRHL----------------TGKEMTLEEIEKLMERDYFMGAK 221

Query: 217 EAKKVGLIDVVGGQE 231
           EA ++G++D +  + 
Sbjct: 222 EALEMGIVDSILDRR 236


>gi|225423749|ref|XP_002277069.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 241

 Score = 49.2 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++ +  + + L+SPGG+  AG AI+  +Q +++  
Sbjct: 56  IVCINGPISDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGAVSAGLAIYDTMQYIRSPV 115

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + +        Y      +      I  V  
Sbjct: 116 NTICLGQAASMGSLLLAAGAKGERRALPNATIMIHQPSGGYSGQAKDMTIHTKQIIRV-- 173

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                       +     L ++      D      D   + T  
Sbjct: 174 ----------------------------WDSLNALYAKHTGQSLDIIQKNMDRDYFMTPE 205

Query: 217 EAKKVGLIDVVGG 229
           EAK+ G+ID V  
Sbjct: 206 EAKEFGIIDEVID 218


>gi|30021886|ref|NP_833517.1| translocation-enhancing protein tepA [Bacillus cereus ATCC 14579]
 gi|218234620|ref|YP_002368598.1| clp protease [Bacillus cereus B4264]
 gi|228922511|ref|ZP_04085812.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228954073|ref|ZP_04116102.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228960002|ref|ZP_04121667.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229047482|ref|ZP_04193072.1| Translocation-enhancing protein tepA [Bacillus cereus AH676]
 gi|229071295|ref|ZP_04204518.1| Translocation-enhancing protein tepA [Bacillus cereus F65185]
 gi|229081051|ref|ZP_04213562.1| Translocation-enhancing protein tepA [Bacillus cereus Rock4-2]
 gi|229111268|ref|ZP_04240821.1| Translocation-enhancing protein tepA [Bacillus cereus Rock1-15]
 gi|229129072|ref|ZP_04258045.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-Cer4]
 gi|229151996|ref|ZP_04280192.1| Translocation-enhancing protein tepA [Bacillus cereus m1550]
 gi|229180074|ref|ZP_04307418.1| Translocation-enhancing protein tepA [Bacillus cereus 172560W]
 gi|29897442|gb|AAP10718.1| Translocation-enhancing protein tepA [Bacillus cereus ATCC 14579]
 gi|218162577|gb|ACK62569.1| clp protease [Bacillus cereus B4264]
 gi|228603283|gb|EEK60760.1| Translocation-enhancing protein tepA [Bacillus cereus 172560W]
 gi|228631551|gb|EEK88184.1| Translocation-enhancing protein tepA [Bacillus cereus m1550]
 gi|228654309|gb|EEL10174.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-Cer4]
 gi|228672044|gb|EEL27335.1| Translocation-enhancing protein tepA [Bacillus cereus Rock1-15]
 gi|228702255|gb|EEL54730.1| Translocation-enhancing protein tepA [Bacillus cereus Rock4-2]
 gi|228711749|gb|EEL63701.1| Translocation-enhancing protein tepA [Bacillus cereus F65185]
 gi|228723729|gb|EEL75084.1| Translocation-enhancing protein tepA [Bacillus cereus AH676]
 gi|228799745|gb|EEM46697.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228805639|gb|EEM52229.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228837106|gb|EEM82446.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 249

 Score = 49.2 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 64/197 (32%), Gaps = 25/197 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVPQ-----TFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224

Query: 231 EEVWQSLYALGVDQSIR 247
               + L  L   ++  
Sbjct: 225 GNAIRKLNELIDVRAED 241


>gi|167464750|ref|ZP_02329839.1| peptidase S14 ClpP [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322382330|ref|ZP_08056237.1| protein export-enhancing factor-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153683|gb|EFX46058.1| protein export-enhancing factor-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 248

 Score = 49.2 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 55/196 (28%), Gaps = 25/196 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++    +      ++  L++ GG   AG AI   I  +      I     +    
Sbjct: 70  EHIIPQLVAAEQSTKIEGVLFILNTVGGDVEAGLAIAEMIATMSKPTVSIV----LGGGH 125

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +  A +                  +      +    + +  +     +         
Sbjct: 126 SIGVPIAVSTDFT--------------FIAETATMTIHPIRLTGLVIGVPQTFEYLDKMQ 171

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
           +     + +    +   +   +                 G    GA+A + GLI+ VGG 
Sbjct: 172 DRVVRFVTKHSNVTEEQFKHLMFKTGELTR-------DIGTTVIGADAVRYGLINAVGGI 224

Query: 231 EEVWQSLYALGVDQSI 246
            E  + LY    ++  
Sbjct: 225 GEAMRELYRRIDEKKA 240


>gi|31340017|sp|Q8DG26|CLPP_VIBVU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|60389705|sp|Q7MMG7|CLPP_VIBVY RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 200

 Score = 49.2 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 34  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 93

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L  +      +      I ++K+
Sbjct: 94  STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKT 153

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                              L++E    P +            +  
Sbjct: 154 KLNK------------------------------LLAEHTGQPLEVIERDTDRDNFMSAD 183

Query: 217 EAKKVGLIDVVGGQEEV 233
           +A + GL+D V      
Sbjct: 184 QAVEYGLVDAVLTHRSA 200


>gi|114777030|ref|ZP_01452050.1| ATP-dependent Clp protease proteolytic subunit [Mariprofundus
           ferrooxydans PV-1]
 gi|114552551|gb|EAU55011.1| ATP-dependent Clp protease proteolytic subunit [Mariprofundus
           ferrooxydans PV-1]
          Length = 207

 Score = 49.2 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 67/212 (31%), Gaps = 36/212 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + GQ++D     +I ++  +  +     + + ++SPGG   +G AI+  +Q ++   
Sbjct: 29  IVFLNGQVDDHTANLIIAQLLFLESEGPDKDIYMYINSPGGVVTSGLAIYDTMQYIRCDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L S A     +   S +     L  +      ++           
Sbjct: 89  STLCIGQAASMGAHLLASGAPGKRFSLPNSRIMIHQPLGGFQGQATDIEIHARE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   + S  +    ++++    P +K    +      T  
Sbjct: 143 ------------------------ILSLKNRLNEMMAKHTGQPIEKLADDVERDYFLTAD 178

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           +A + GL+D V           A G     +K
Sbjct: 179 QACEYGLVDKVLSS---RAEAVAAGGGNDDKK 207


>gi|27363512|ref|NP_759040.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus
           CMCP6]
 gi|37679288|ref|NP_933897.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus
           YJ016]
 gi|320156969|ref|YP_004189348.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus
           MO6-24/O]
 gi|27359628|gb|AAO08567.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           vulnificus CMCP6]
 gi|37198031|dbj|BAC93868.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio vulnificus
           YJ016]
 gi|319932281|gb|ADV87145.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus
           MO6-24/O]
          Length = 208

 Score = 49.2 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L  +      +      I ++K+
Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKT 161

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                              L++E    P +            +  
Sbjct: 162 KLNK------------------------------LLAEHTGQPLEVIERDTDRDNFMSAD 191

Query: 217 EAKKVGLIDVVGGQEEV 233
           +A + GL+D V      
Sbjct: 192 QAVEYGLVDAVLTHRSA 208


>gi|170706783|ref|ZP_02897241.1| clp protease [Bacillus anthracis str. A0389]
 gi|170128201|gb|EDS97070.1| clp protease [Bacillus anthracis str. A0389]
          Length = 249

 Score = 49.2 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLIVLNTVGGDVEAGLAISEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224

Query: 231 EEVWQSLYAL 240
               + L  L
Sbjct: 225 GNAIRKLNEL 234


>gi|115351925|ref|YP_773764.1| peptidase S14, ClpP [Burkholderia ambifaria AMMD]
 gi|115281913|gb|ABI87430.1| peptidase S14, ClpP [Burkholderia ambifaria AMMD]
          Length = 361

 Score = 49.2 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 74/192 (38%), Gaps = 39/192 (20%)

Query: 41  IAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           I I  +I     D+Q  + +++  +   +A+ ++V+++S GG  +   AI+ A+++   +
Sbjct: 22  IRIYNEIGFWGTDAQTFVTQLDAAAA--NASTIVVAINSMGGDVFDAFAIYNALRRHAGK 79

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
             V      +AASA  LI+ A + IV  E +L+                        +V 
Sbjct: 80  VKVRV--DGVAASAASLIAMAGDEIVMPENALLMIHN------------------AHTVT 119

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215
           +   K        ++            ++    +   +       D+   + D   W T 
Sbjct: 120 AGEAKDLRRIADLLD------------NAGDGILAAYAAKSGQSIDEIRGMMDAETWLTA 167

Query: 216 AEAKKVGLIDVV 227
           A+AK+ G  D +
Sbjct: 168 AQAKEKGFCDTI 179


>gi|330446593|ref|ZP_08310245.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490784|dbj|GAA04742.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 207

 Score = 49.2 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 63/196 (32%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L  +      +      I ++  
Sbjct: 102 STVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQIHAQEILTI-- 159

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L++E    P +            +  
Sbjct: 160 ----------------------------KQRLNGLLAEHTGQPLEIIERDTDRDNFMSAD 191

Query: 217 EAKKVGLIDVVGGQEE 232
           +A + GL+D V  + +
Sbjct: 192 QAVEYGLVDAVLSKRD 207


>gi|47569067|ref|ZP_00239756.1| translocation-enhancing protein tepA [Bacillus cereus G9241]
 gi|228986940|ref|ZP_04147066.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229157374|ref|ZP_04285452.1| Translocation-enhancing protein tepA [Bacillus cereus ATCC 4342]
 gi|47554229|gb|EAL12591.1| translocation-enhancing protein tepA [Bacillus cereus G9241]
 gi|228626101|gb|EEK82850.1| Translocation-enhancing protein tepA [Bacillus cereus ATCC 4342]
 gi|228772718|gb|EEM21158.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 249

 Score = 49.2 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224

Query: 231 EEVWQSLYAL 240
               + L  L
Sbjct: 225 GNAIRKLNEL 234


>gi|229174462|ref|ZP_04301994.1| Translocation-enhancing protein tepA [Bacillus cereus MM3]
 gi|228609022|gb|EEK66312.1| Translocation-enhancing protein tepA [Bacillus cereus MM3]
          Length = 249

 Score = 49.2 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224

Query: 231 EEVWQSLYAL 240
               + L  L
Sbjct: 225 GNAIRKLNEL 234


>gi|206975220|ref|ZP_03236134.1| prophage LambdaBa02, Clp protease family protein [Bacillus cereus
           H3081.97]
 gi|206746641|gb|EDZ58034.1| prophage LambdaBa02, Clp protease family protein [Bacillus cereus
           H3081.97]
          Length = 251

 Score = 49.2 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 76/260 (29%), Gaps = 50/260 (19%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSP 76
           +       +   A + I G+I            S      ++ +  D     + + ++SP
Sbjct: 9   FFQMKASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDD--IETINLYINSP 66

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GGS +   AI   +Q+ + +  VI+ +  + AS   ++   S+ I+    S++       
Sbjct: 67  GGSVFETMAIIAMLQRHQAK--VISYIDGIGASCASVLPMISDKIIMYANSMMMIHNAWT 124

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                   L K    I+ +                                    L    
Sbjct: 125 YASGNANQLRKAADDIERINQ----------------------------SMVQHYLTRAG 156

Query: 197 RNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
             +  D    L D   W +  EA   GL D +         L         + +K++   
Sbjct: 157 DKLDEDTLKQLLDAETWLSAEEAMNYGLCDEIISANNAAACL-------DEKWMKEYKNV 209

Query: 256 KNYWFCDLKNLSISSLLEDT 275
                    N+  + +LE  
Sbjct: 210 PQQLVNAQANIPSNEMLERQ 229


>gi|88800033|ref|ZP_01115603.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Reinekea sp.
           MED297]
 gi|88777159|gb|EAR08364.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Reinekea sp.
           MED297]
          Length = 209

 Score = 49.2 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED     ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 45  VIFLVGQVEDYMANLVVAQLLFLESENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKPDV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S +     L  Y      ++           
Sbjct: 105 STMCIGQAASMGALLLTGGAKGKRYCLPNSRMMIHQPLGGYQGQATDIEIHARE------ 158

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         +++     P +            T  
Sbjct: 159 ------------------------ILEMKRRLNEIMAHHTGRPLEDVERDTDRDNFMTAE 194

Query: 217 EAKKVGLIDVVGG 229
           +A   GL+D V  
Sbjct: 195 QAVDYGLVDQVIT 207


>gi|228943547|ref|ZP_04105982.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973794|ref|ZP_04134371.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980349|ref|ZP_04140660.1| Translocation-enhancing protein tepA [Bacillus thuringiensis Bt407]
 gi|228779454|gb|EEM27710.1| Translocation-enhancing protein tepA [Bacillus thuringiensis Bt407]
 gi|228785946|gb|EEM33948.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228816134|gb|EEM62324.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326941508|gb|AEA17404.1| translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 249

 Score = 49.2 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 64/196 (32%), Gaps = 25/196 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVPQ-----TFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224

Query: 231 EEVWQSLYALGVDQSI 246
               + L  L   ++ 
Sbjct: 225 GNAIRKLNELIDVRAE 240


>gi|167945133|ref|ZP_02532207.1| peptidase, S49 (protease IV) family protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 159

 Score = 49.2 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 13/105 (12%)

Query: 36  PHVARIAIRGQ----------IEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYA 82
             VA I + G           I  +     L +       +     +++ + SPGG    
Sbjct: 54  DGVAIIPVVGPLFRYANLFTAISGASSYEILAKDFTTALDNPEVKGIVLDIDSPGGEVNG 113

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
                  I + +  KP+I      AAS  Y I+ A + +V +ETS
Sbjct: 114 CAEFANMIFEARGTKPIIAYTSGDAASGAYWIASACDEVVVSETS 158


>gi|157369338|ref|YP_001477327.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia
           proteamaculans 568]
 gi|157321102|gb|ABV40199.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia
           proteamaculans 568]
          Length = 207

 Score = 49.2 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  +     + + ++SPGG   AG +I+  ++ +K   
Sbjct: 42  IIFLTGQVEDHMANLIVAQMLFLEAESPEKDIFLYINSPGGVITAGMSIYDTMKFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A         S V     L  Y      ++           
Sbjct: 102 STICMGQACSMGSFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++E      ++        R  T  
Sbjct: 156 ------------------------ILKVKARMNELMAEHTGQTLEQIERDTERDRFMTAE 191

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 192 EAVEYGLVDGILT 204


>gi|329121861|ref|ZP_08250476.1| ATP-dependent Clp protease, protease subunit [Dialister
           micraerophilus DSM 19965]
 gi|327467799|gb|EGF13291.1| ATP-dependent Clp protease, protease subunit [Dialister
           micraerophilus DSM 19965]
          Length = 205

 Score = 49.2 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 63/200 (31%), Gaps = 33/200 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQIED  +  +I ++  +  +D    + + ++SPGG   AG AI+  +Q ++   
Sbjct: 35  IIFLDGQIEDHMANVIIAQLLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMQYIRPDV 94

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L S A     A   S V     L         ++           
Sbjct: 95  STICIGSCASMAAVLLTSGAKGKRFALPHSNVMIHQPLGGVQGQATEIEIHARE------ 148

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                                   +         ++++    P D            T  
Sbjct: 149 ------------------------ILRLRDELNGILAKHTGQPLDVIKKDTERDNFMTAE 184

Query: 217 EAKKVGLIDVVGGQEEVWQS 236
            A K GLID +  + E+   
Sbjct: 185 NALKYGLIDKILTRNELTAK 204


>gi|293189652|ref|ZP_06608369.1| Clp protease [Actinomyces odontolyticus F0309]
 gi|292821390|gb|EFF80332.1| Clp protease [Actinomyces odontolyticus F0309]
          Length = 216

 Score = 49.2 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 61/198 (30%), Gaps = 33/198 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D     +  ++  ++ +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 43  IIWLGGEVRDDNANVICAQLLLLAAEDPDRDIYLYINSPGGSVTAGMAIYDTMQYIKPDV 102

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +     L + A         + V     L                      
Sbjct: 103 VTVGMGMAASMGQFLLTAGAPGKRYITPHTRVLLHQPLGGAGG----------------- 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                        +   +++  D++         + +       ++     D   W T  
Sbjct: 146 -------------SATEIRINADLILGMKKELASITAARTGKTVEQVEADGDRDHWFTAQ 192

Query: 217 EAKKVGLIDVVGGQEEVW 234
           EA + G +D V    +  
Sbjct: 193 EALEYGFVDRVIDSPQEI 210


>gi|212634709|ref|YP_002311234.1| hypothetical protein swp_1887 [Shewanella piezotolerans WP3]
 gi|212556193|gb|ACJ28647.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
          Length = 464

 Score = 49.2 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 94/243 (38%), Gaps = 15/243 (6%)

Query: 10  TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSAT 67
            +  +L ++T  +     S+        +  ++++G I  +  ++L   I   ++  +  
Sbjct: 4   WKLALLVILTALLCMGVQSADENTLGTEIPVVSVKGAIGPAVGKQLTAEINAANQQHNVP 63

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAET 126
            +I++L +PGG   +  +I + I         +       AASAG  +  A ++   A  
Sbjct: 64  LIIITLDTPGGLVSSLRSINQTILTSDIPVACLVYPKGARAASAGTYMLYACHVAAMATA 123

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
           + +G+   +   P           S   +  +  + + +P +       + + +   +  
Sbjct: 124 TTLGAATPVQMGPSAP--------SPDKINPADKEGDNTPENPSPSAMEKKILNDAIAYI 175

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQS 245
               +L    RN  + +   +++    T  EA  + +ID++    +++ ++L    ++  
Sbjct: 176 RSLAQL--RGRNQEWAEL-AVTEAATLTATEALALNVIDLLAESPQQLVRNLDGKVIEFG 232

Query: 246 IRK 248
             +
Sbjct: 233 DVE 235


>gi|85713354|ref|ZP_01044368.1| Protease subunit of ATP-dependent Clp protease [Idiomarina baltica
           OS145]
 gi|85692821|gb|EAQ30805.1| Protease subunit of ATP-dependent Clp protease [Idiomarina baltica
           OS145]
          Length = 205

 Score = 49.2 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 53/176 (30%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  D+    + + ++SPGG   AG AI+  ++ +K     +      +  A  
Sbjct: 53  IVAQLLFLESDNPDKDIYLYINSPGGVVTAGMAIYDTMRFIKPDVSTVCMGQAASMGAFL 112

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L   A         S V     L  +       +                          
Sbjct: 113 LAGGAQGKRYCLPNSRVMIHQPLGGFQGQASDFE-------------------------- 146

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227
               +    +        R+++E+    Y+K           T  EA   GL+D +
Sbjct: 147 ----IHAKQILDLKERLNRMLAENTGQDYEKVARDTDRDHFLTAPEAVDYGLVDGI 198


>gi|258592920|emb|CBE69229.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [NC10 bacterium 'Dutch sediment']
          Length = 205

 Score = 49.2 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 33/199 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I   I+D++   +I ++  +  +D    + + ++SPGGS  A  AI+  +Q +K   
Sbjct: 29  ILFIGTPIDDAESNLIIAQLLFLEAEDPDKDIHLYVNSPGGSVTASLAIYDTMQYIKPAI 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L + A     A   + +                            
Sbjct: 89  ETICMGQAASGAALLLAAGAKGKRYALPHARIMIHQPYG--------------------- 127

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                      +         +             +++    P ++    SD   + + +
Sbjct: 128 GAQGQASDIQIQAKEILRMRQELDRI---------IADHTGQPLERIEKDSDRDFFMSPS 178

Query: 217 EAKKVGLIDVVGGQEEVWQ 235
           EAK  GLID V    +   
Sbjct: 179 EAKDYGLIDEVIYSRDGLA 197


>gi|291233557|ref|XP_002736719.1| PREDICTED: Enoyl-CoA Hydratase family member-like [Saccoglossus
           kowalevskii]
          Length = 388

 Score = 49.2 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 74/275 (26%), Gaps = 37/275 (13%)

Query: 27  WSSHVEDNSPHVARIAIRGQ-------IEDSQELIERIERISRDDSATALIVSLSSPGGS 79
           + S        VA I +          I   +E+ + +   + D++   +++   S  G 
Sbjct: 106 FQSVQYTVKDKVANITLNRPNRLNAIGIHTPKEIYQSVLLANNDENVKVIVL---SGKGR 162

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           A+     +  I   ++ +                   A             S    F   
Sbjct: 163 AFCSG--YDLIDFAQSERGTFGSQKMPWDPYTDYKVMA-------------SCTEAFMSL 207

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
           +         V   +V      A       +   A                  V   R  
Sbjct: 208 WKSYKPTVCKVHGFAVAGGSDIALCCDMVIMADNAKIGYPPSRVWGCSTPAMWV--YRVG 265

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLI------DVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           P     +L  G + TG EA  +GL+      D +   ++    L    V+    ++    
Sbjct: 266 PEKAKRLLFTGDLITGKEATDMGLVLQSVPEDKL---DDAVDKLVQRMVNVPSNQLFFQK 322

Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
              N     +  LS +  L   +  M +   +G+ 
Sbjct: 323 QVINQAVEQM-GLSSTQRLATFLDGMTRHSPEGVL 356


>gi|225680955|gb|EEH19239.1| ATP-dependent Clp protease proteolytic subunit [Paracoccidioides
           brasiliensis Pb03]
          Length = 235

 Score = 49.2 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/195 (11%), Positives = 60/195 (30%), Gaps = 31/195 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++++  S  ++ ++  +  D+    + + ++SPGGS  AG A++  +  +    
Sbjct: 47  IVCLNGEVDETLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISAPV 106

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L             S V        Y                   
Sbjct: 107 STICVGQAASMGSLLLCGGHPGKRFCLPHSSVMVHQPSGGYFGQA--------------- 151

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
                           A+   + +        +      + +  D+     +   + G  
Sbjct: 152 -------------TDIAIHAKEILRVRRQLNEIYKRHLKKEMSLDEIEKWMERDYFMGAK 198

Query: 217 EAKKVGLIDVVGGQE 231
           EA ++G++D +  + 
Sbjct: 199 EALEMGIVDEILDRR 213


>gi|30263799|ref|NP_846176.1| hypothetical protein BA_3932 [Bacillus anthracis str. Ames]
 gi|47529224|ref|YP_020573.1| hypothetical protein GBAA_3932 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186646|ref|YP_029898.1| hypothetical protein BAS3647 [Bacillus anthracis str. Sterne]
 gi|65321124|ref|ZP_00394083.1| COG0740: Protease subunit of ATP-dependent Clp proteases [Bacillus
           anthracis str. A2012]
 gi|165872618|ref|ZP_02217249.1| clp protease [Bacillus anthracis str. A0488]
 gi|167635861|ref|ZP_02394170.1| clp protease [Bacillus anthracis str. A0442]
 gi|167639876|ref|ZP_02398145.1| clp protease [Bacillus anthracis str. A0193]
 gi|170687843|ref|ZP_02879057.1| clp protease [Bacillus anthracis str. A0465]
 gi|177652109|ref|ZP_02934655.1| clp protease [Bacillus anthracis str. A0174]
 gi|190568387|ref|ZP_03021294.1| clp protease [Bacillus anthracis Tsiankovskii-I]
 gi|227813295|ref|YP_002813304.1| clp protease [Bacillus anthracis str. CDC 684]
 gi|229601887|ref|YP_002868036.1| clp protease [Bacillus anthracis str. A0248]
 gi|254683496|ref|ZP_05147356.1| clp protease [Bacillus anthracis str. CNEVA-9066]
 gi|254722017|ref|ZP_05183806.1| clp protease [Bacillus anthracis str. A1055]
 gi|254735835|ref|ZP_05193541.1| clp protease [Bacillus anthracis str. Western North America
           USA6153]
 gi|254739639|ref|ZP_05197333.1| clp protease [Bacillus anthracis str. Kruger B]
 gi|254755988|ref|ZP_05208019.1| clp protease [Bacillus anthracis str. Vollum]
 gi|254759351|ref|ZP_05211376.1| clp protease [Bacillus anthracis str. Australia 94]
 gi|30258443|gb|AAP27662.1| clp protease [Bacillus anthracis str. Ames]
 gi|47504372|gb|AAT33048.1| clp protease [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180573|gb|AAT55949.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|164711650|gb|EDR17196.1| clp protease [Bacillus anthracis str. A0488]
 gi|167512277|gb|EDR87654.1| clp protease [Bacillus anthracis str. A0193]
 gi|167528818|gb|EDR91576.1| clp protease [Bacillus anthracis str. A0442]
 gi|170668159|gb|EDT18908.1| clp protease [Bacillus anthracis str. A0465]
 gi|172082478|gb|EDT67543.1| clp protease [Bacillus anthracis str. A0174]
 gi|190560391|gb|EDV14369.1| clp protease [Bacillus anthracis Tsiankovskii-I]
 gi|227006134|gb|ACP15877.1| clp protease [Bacillus anthracis str. CDC 684]
 gi|229266295|gb|ACQ47932.1| clp protease [Bacillus anthracis str. A0248]
          Length = 249

 Score = 49.2 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLIVLNTVGGDVEAGLAISEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224

Query: 231 EEVWQSLYAL 240
               + L  L
Sbjct: 225 GNAIRKLNEL 234


>gi|194467896|ref|ZP_03073882.1| peptidase S14 ClpP [Lactobacillus reuteri 100-23]
 gi|194452749|gb|EDX41647.1| peptidase S14 ClpP [Lactobacillus reuteri 100-23]
          Length = 258

 Score = 48.8 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 80/267 (29%), Gaps = 39/267 (14%)

Query: 31  VEDNSPHVARIAIRGQIE-----DSQELIERIERISRD-DSATALIVSLSSPGGSAYAGE 84
            +++      + I G+I      D+           +       + + ++SPGGS + G 
Sbjct: 13  KQESKNMTPEMYIDGEIVTDEYEDTDTSAAGFRNALKSLGDVKNINLHINSPGGSVFEGI 72

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           AI+  ++  +N   +   +  +AAS   +I+ + + I     S++               
Sbjct: 73  AIYNMLK--QNSAHINVYIDGLAASIASVIAMSGDAIFMPSNSMMMVHNPWVMAIGNANE 130

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           L K   ++  +                                    L      +     
Sbjct: 131 LRKQADALDQITK----------------------------SSVQTYLAKAGDKLDEKTL 162

Query: 205 LVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
             L D   W T  EA   GL D V    +   S+         R + +    +     + 
Sbjct: 163 TQLMDDETWLTAQEAVDYGLADEVMEPNKAVASINKQF-VSRYRHVPEQLIKQAEHDDNK 221

Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWAV 290
            N    +L ++ +  + +  +    A+
Sbjct: 222 LNSEQ-NLEQEQLNKIHEKALANAKAL 247


>gi|325279621|ref|YP_004252163.1| peptidase S49 [Odoribacter splanchnicus DSM 20712]
 gi|324311430|gb|ADY31983.1| peptidase S49 [Odoribacter splanchnicus DSM 20712]
          Length = 467

 Score = 48.8 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 86/241 (35%), Gaps = 17/241 (7%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-ELIERIERISRDDSATALIVSLS 74
            ++ +  + +  +    +    V ++ I+ +I      L  +   ++  + A  +++ ++
Sbjct: 10  LVLLVLGICWLNTLGAAEPEKVVYKVDIKDEIGPEVWRLARKSFDLAGQEKADYILIHMN 69

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           + GG     +++   I  + +RKPV   +   AASAG LIS A + I   E + +G+  V
Sbjct: 70  TYGGMVVYADSLRSMI--LNSRKPVWVFIDNNAASAGALISIACDKIYMREGANIGAATV 127

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           + Q     P   +  +      ++  +   +     +          +  +       + 
Sbjct: 128 VNQTGEAMPDKYQSYMRSMIRSTAEAQGRDTLVQGRDTVYRWKRNPHIAEAMVDQSIYI- 186

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIKDWN 253
                             +T  EA K G  D +    EEV +             I+ ++
Sbjct: 187 -------QGITDSGRVVTFTAREAMKYGFCDGMAESVEEVLKK-----EQVENYTIRSYH 234

Query: 254 P 254
           P
Sbjct: 235 P 235


>gi|295110105|emb|CBL24058.1| Protease subunit of ATP-dependent Clp proteases [Ruminococcus obeum
           A2-162]
          Length = 240

 Score = 48.8 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 62/200 (31%), Gaps = 25/200 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + ++ ++  I  D     L++ L++ GG   AG AI   I  +      +      +   
Sbjct: 64  EHVLPKLALIEDDKDVDGLLILLNTVGGDVEAGLAIAEMIASLSIPTVSLVLGGGHSIGV 123

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +S   +  V + T ++  +     +  V      +      +         +    +
Sbjct: 124 PMAVSADYSFAVPSATMVIHPVRSSGMFIGVAQSYRNIEKIQDRITGFIAAHSGTTQERL 183

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
               +   Q V D                          G +  G EA K GLI+ +GG 
Sbjct: 184 EELMLDTSQLVKDV-------------------------GTMLEGREAVKEGLINEIGGI 218

Query: 231 EEVWQSLYALGVDQSIRKIK 250
            E    L+ +  ++     K
Sbjct: 219 REALARLHQMIEEKEAADKK 238


>gi|153871566|ref|ZP_02000706.1| conserved hypothetical protein, membrane [Beggiatoa sp. PS]
 gi|152071969|gb|EDN69295.1| conserved hypothetical protein, membrane [Beggiatoa sp. PS]
          Length = 457

 Score = 48.8 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 65/214 (30%), Gaps = 7/214 (3%)

Query: 14  MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIV 71
           + SL+ + +   S      +       + I+G I    +  L   +E    +   T +++
Sbjct: 6   LFSLILIFLALLSPLQTQANGKAW--VLDIKGAIGPATADYLKRGLEDAR-NQGVTIVVL 62

Query: 72  SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
            + +PGG   A   + +AI                 A++       ++ + A        
Sbjct: 63  RMDTPGGLDIAMREMIQAIIASPIPIVTYVSPPGARAASAGTYILYASHVAAMAPG-TNL 121

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
                              S  S   +  KA+    +  +       + V D+  +    
Sbjct: 122 GAATPVTIGGGGIPGLPENSDDSKNKTDDKADSEDKTTQSTSETMTHKMVNDAEAYLRSL 181

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
                RN  +     + +    +  +A + G+ID
Sbjct: 182 AQMHGRNQEWAAL-AVRESASLSAQDALEKGVID 214


>gi|260459137|ref|ZP_05807392.1| Endopeptidase Clp [Mesorhizobium opportunistum WSM2075]
 gi|259034691|gb|EEW35947.1| Endopeptidase Clp [Mesorhizobium opportunistum WSM2075]
          Length = 201

 Score = 48.8 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G+I D     +  ++  +  D+    + + ++SPGG   +G AI+  +Q +    
Sbjct: 33  IIFINGEINDDISALVCAQLLSLESDNPDKEISLYINSPGGVVTSGFAIYDTMQYISCPV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L++      ++   + +     L  +                   
Sbjct: 93  STVCMGFAASMGSFLLMAGTPGRRISLPNATILLHQPLGGFQGQ---------------- 136

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            +Q   + +  +      L ++     Y++    L      T  
Sbjct: 137 --------------ASDIQRHAERIVKTKRHMAELYAQHCGRSYEEVERTLDRDHFMTAR 182

Query: 217 EAKKVGLIDVV 227
           EA+  G++D V
Sbjct: 183 EAQAWGIVDHV 193


>gi|229104359|ref|ZP_04235028.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-28]
 gi|228679057|gb|EEL33265.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-28]
          Length = 249

 Score = 48.8 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224

Query: 231 EEVWQSLYAL 240
               Q L  L
Sbjct: 225 GSALQKLNEL 234


>gi|288556926|ref|YP_003428861.1| hypothetical protein BpOF4_19650 [Bacillus pseudofirmus OF4]
 gi|288548086|gb|ADC51969.1| hypothetical protein BpOF4_19650 [Bacillus pseudofirmus OF4]
          Length = 249

 Score = 48.8 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 73/201 (36%), Gaps = 27/201 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  + ++     L++ L++ GG   AG AI   +  +   KP +T V     S 
Sbjct: 70  EHIIPQLVAVEQNPKIEGLLLILNTVGGDVEAGLAISEMVASM--SKPSVTLVLGGGHSI 127

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  I+ A+N    A+T+ +    V      +                           ++
Sbjct: 128 GVPIAVAANYSFIAKTATMTIHPVRLTGLVIGVP-----------------QTFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + +  +      S   F  L+    N+  D       G    G +A + GLID VGG 
Sbjct: 171 QERVISFVTQQSGISEEKFKELMLSKGNLTRDI------GTNVVGTDAVEYGLIDEVGGI 224

Query: 231 EEVWQSLYALGVDQSIRKIKD 251
               + L  L    + + +K+
Sbjct: 225 GSALKKLNEL--IDANKPVKE 243


>gi|269102129|ref|ZP_06154826.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162027|gb|EEZ40523.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 207

 Score = 48.8 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIYLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L  +      +      I ++  
Sbjct: 102 STVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQIHAQEILTI-- 159

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L++E    P +            +  
Sbjct: 160 ----------------------------KQKLNNLLAEHTGQPLEVIERDTDRDNFMSAD 191

Query: 217 EAKKVGLIDVV 227
           +A + GL+D V
Sbjct: 192 QAVEYGLVDAV 202


>gi|330808572|ref|YP_004353034.1| endopeptidase Clp (ATP-dependent Clp protease proteolytic subunit
           ClpP) [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376680|gb|AEA68030.1| endopeptidase Clp (ATP-dependent Clp protease proteolytic subunit
           ClpP) [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 211

 Score = 48.8 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 60/197 (30%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     +  ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 45  VIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L + A         S V     L  +      ++     I  +  
Sbjct: 105 STTCIGQACSMGAFLLTAGAHGKRYCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFI-- 162

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L+++      ++     +     +  
Sbjct: 163 ----------------------------RERLNTLMAKHSGRTLEEIERDTNRDNFMSAE 194

Query: 217 EAKKVGLIDVVGGQEEV 233
            A++ GLID V  Q   
Sbjct: 195 AAREYGLIDEVINQRPA 211


>gi|323140768|ref|ZP_08075687.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414786|gb|EFY05586.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Phascolarctobacterium sp. YIT 12067]
          Length = 197

 Score = 48.8 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G I+D+    +I ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IVFVTGPIDDNMANVVIAQLLFLESEDPDKDIHLYINSPGGSVSAGMAIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++  L + A     A   S V     L         ++     I  +  
Sbjct: 89  STICMGMAASMASVLLAAGAPGKRFALPYSRVMIHQPLGGAQGQATEIEIHAREILRI-- 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            +++++      +K           T  
Sbjct: 147 ----------------------------REEMNQVLAKHTGQTVEKIAADTERDHYLTSK 178

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 179 EAKEYGLIDEV 189


>gi|257791675|ref|YP_003182281.1| Endopeptidase Clp [Eggerthella lenta DSM 2243]
 gi|317487860|ref|ZP_07946452.1| Clp protease [Eggerthella sp. 1_3_56FAA]
 gi|325830649|ref|ZP_08164070.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Eggerthella sp. HGA1]
 gi|257475572|gb|ACV55892.1| Endopeptidase Clp [Eggerthella lenta DSM 2243]
 gi|316912986|gb|EFV34503.1| Clp protease [Eggerthella sp. 1_3_56FAA]
 gi|325487395|gb|EGC89837.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Eggerthella sp. HGA1]
          Length = 207

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 62/197 (31%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  QI+D  +  ++ ++  +   D    + + ++SPGGS  AG AI   +  +K   
Sbjct: 35  VIFLGEQIDDNVANSVVAQLLHLESADPDKDISLYINSPGGSVTAGLAILDTMDFIKCDV 94

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L + A    +    S+V            +  +  +         
Sbjct: 95  STICLGECASMAAVLLSNGAKGKRLCLPNSMVLIHQPSGGAQGQQTEIAIVAD------- 147

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +  + +   ++++++     +            T  
Sbjct: 148 -----------------------FMLKTRNRLNKILADNTGQTLETIQNDTERDNYMTAE 184

Query: 217 EAKKVGLIDVVGGQEEV 233
           EA   GL+D +     V
Sbjct: 185 EAVAYGLVDRITTSRAV 201


>gi|239636619|ref|ZP_04677621.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus warneri L37603]
 gi|239597974|gb|EEQ80469.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus warneri L37603]
          Length = 196

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 62/192 (32%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  QI+D  +  ++ ++  +   DS   + + ++SPGGS  AG AI+  IQ +K   
Sbjct: 29  IIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + V     L         ++           
Sbjct: 89  QTICIGMAASMGSFLLAAGAKGKRYALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +  +     R+++E      +K           T  
Sbjct: 142 -----------------------HILKTREKLNRILAERTGQSIEKIQQDTDRDNFLTAE 178

Query: 217 EAKKVGLIDVVG 228
           EAK  GL+D V 
Sbjct: 179 EAKAYGLVDEVM 190


>gi|314933077|ref|ZP_07840443.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus caprae C87]
 gi|313654396|gb|EFS18152.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus caprae C87]
          Length = 195

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 63/192 (32%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  QI+D  +  ++ ++  +   DS   + + ++SPGGS  AG AI+  IQ +K   
Sbjct: 29  IIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + V     L         ++           
Sbjct: 89  QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +  +     R+++E      +K           T  
Sbjct: 142 -----------------------HILKTREKLNRILAERTGQSIEKIQQDTDRDNFLTAE 178

Query: 217 EAKKVGLIDVVG 228
           EAK+ GLID V 
Sbjct: 179 EAKEYGLIDEVM 190


>gi|229098266|ref|ZP_04229213.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-29]
 gi|228685164|gb|EEL39095.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-29]
          Length = 249

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224

Query: 231 EEVWQSLYAL 240
               Q L  L
Sbjct: 225 GSALQKLNEL 234


>gi|223043057|ref|ZP_03613105.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus capitis SK14]
 gi|222443911|gb|EEE50008.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus capitis SK14]
          Length = 195

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 63/192 (32%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  QI+D  +  ++ ++  +   DS   + + ++SPGGS  AG AI+  IQ +K   
Sbjct: 29  IIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + V     L         ++           
Sbjct: 89  QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +  +     R+++E      +K           T  
Sbjct: 142 -----------------------HILKTREKLNRILAERTGQSIEKIQQDTDRDNFLTAE 178

Query: 217 EAKKVGLIDVVG 228
           EAK+ GLID V 
Sbjct: 179 EAKEYGLIDEVM 190


>gi|228987450|ref|ZP_04147569.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228772182|gb|EEM20629.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 240

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 75/256 (29%), Gaps = 50/256 (19%)

Query: 31  VEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSA 80
               +   A + I G+I            S      ++ +  D     + + ++SPGGS 
Sbjct: 2   KASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDD--IETINLYINSPGGSV 59

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           +   AI   +Q+ + +  VI+ +  + AS   ++   S+ I+    S++           
Sbjct: 60  FETMAIIAMLQRHQAK--VISYIDGIGASCASVLPMISDKIIMYANSMMMIHNAWTYASG 117

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L K    I+ +                                    L      + 
Sbjct: 118 NANQLRKAADDIERINQ----------------------------SMVQHYLTRAGDKLD 149

Query: 201 YDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
            D    L D   W +  EA   GL D +         L         + +K++       
Sbjct: 150 EDTLKQLLDAETWLSAEEAMNYGLCDEIISANNAAACL-------DEKWMKEYKNVPQQL 202

Query: 260 FCDLKNLSISSLLEDT 275
                N+  + +LE  
Sbjct: 203 VNAQANIPSNEMLERQ 218


>gi|332976916|gb|EGK13738.1| translocation-enhancing protein TepA [Desmospora sp. 8437]
          Length = 257

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 61/187 (32%), Gaps = 25/187 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I    ++ +   +I+ L++ GG   AG A+   I  +      +          
Sbjct: 82  EHVIPQIVAAEQNRNIEGVIIILNTVGGDVEAGLALAEMIASMSKPTVSL---------- 131

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
                     ++    S+   I V      +    +   +++  V+ + +        E 
Sbjct: 132 ----------VLGGGHSIGVPIAVSAD---ISFIAETATMTVHPVRLTGLVVGVPQTFEY 178

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             K    +   V    +       E      +    +    I  GA+A K GLID VGG 
Sbjct: 179 MEKMQDRVIRFVSDHSNIGEERFRELMFRTGELARDIGTNVI--GADAVKYGLIDRVGGL 236

Query: 231 EEVWQSL 237
            E    L
Sbjct: 237 AEALGEL 243


>gi|257460311|ref|ZP_05625414.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           gracilis RM3268]
 gi|257442376|gb|EEV17516.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           gracilis RM3268]
          Length = 194

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I+D+    ++ ++  +  +D    + + ++SPGG   +G +I+  +  +K   
Sbjct: 28  IVMLSGEIDDAVASSIVAQLLFLEAEDPDKDIYLYINSPGGVVTSGFSIYDTMNYIKPDV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     A   S +     L         ++           
Sbjct: 88  STICIGQAASMGAFLLSCGAKGKRYALPNSRIMIHQPLGGAQGQATDIE----------- 136

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                              +    +         ++S++      +    +D   + +  
Sbjct: 137 -------------------IQAKEILRMKEILNGILSQNSGKDLAQVEKDTDRDFFMSAE 177

Query: 217 EAKKVGLIDVV 227
           +A + GLID V
Sbjct: 178 DAVQYGLIDQV 188


>gi|330684877|gb|EGG96562.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus epidermidis VCU121]
          Length = 196

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 61/192 (31%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  QI+D  +  ++ ++  +   DS   + + ++SPGGS  AG AI+  IQ +K   
Sbjct: 29  IIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + V     L         ++           
Sbjct: 89  QTICIGMAASMGSFLLAAGAKGKRYALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +  +     R+ SE      +K           T  
Sbjct: 142 -----------------------HILKTREKLNRIFSERTGQSIEKIQQDTDRDNFLTAE 178

Query: 217 EAKKVGLIDVVG 228
           EAK  GL+D V 
Sbjct: 179 EAKAYGLVDEVM 190


>gi|325142748|gb|EGC65122.1| hypothetical protein NMB9615945_0670 [Neisseria meningitidis
           961-5945]
          Length = 92

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 8/98 (8%)

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            F + VSE+R  P      ++ G  W G +A  + LID +   +++    +        +
Sbjct: 1   MFKQFVSENR--PQLDIEEVATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 52

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           ++ +    +         L   + +E     +   +  
Sbjct: 53  QVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRAD 90


>gi|302871325|ref|YP_003839961.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574184|gb|ADL41975.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 195

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I D     ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 30  IVILSGEITDDIASLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGFAIYDTMQYIKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   S +     L                      
Sbjct: 90  STICVGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGVRGQ---------------- 133

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            +++  + +    +   +++SE    P +     +D   + T  
Sbjct: 134 --------------ATDIKIHAEWILKIKNRINKILSERTGQPIEVIERDTDRDFFMTAE 179

Query: 217 EAKKVGLIDVV 227
           EA K G+ID V
Sbjct: 180 EALKYGIIDRV 190


>gi|289679276|ref|ZP_06500166.1| serine peptidase S49 family protein [Pseudomonas syringae pv.
           syringae FF5]
          Length = 112

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 13/109 (11%)

Query: 36  PHVARIAIRGQ----------IEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYA 82
             VA I + G           I  +     L   ++    D S  ++I+++ SPGG A  
Sbjct: 4   NGVAIIPVVGPVFRYANLFTEISGATSTQVLATDLQSALDDPSIKSIILNIDSPGGVAAG 63

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
              +   I   + RK ++  V    ASA Y ++ A++ IV  ET+L+GS
Sbjct: 64  INELADQIHAGRARKRIVAYVGGTGASAAYWLASAASEIVIDETALLGS 112


>gi|257068142|ref|YP_003154397.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Brachybacterium faecium DSM 4810]
 gi|256558960|gb|ACU84807.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Brachybacterium faecium DSM 4810]
          Length = 233

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 61/186 (32%), Gaps = 26/186 (13%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    + + ++SPGGS  A  AI+  +Q +K     +      +
Sbjct: 67  ASADDVMAQLLVLESQDPDRDITLYINSPGGSFTALTAIYDTMQYIKPEVTTVCLGQAAS 126

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L + +    +A   + +                  L +    +            
Sbjct: 127 AAAVLLAAGSPGKRLALPNARILIHQPAMGGEGGGGQASDLEIQANEIM----------- 175

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
                +  + +++ +          VS+           +   +I T   A + GL+D V
Sbjct: 176 -----RMREWLEETLAHHSGRTKEQVSK----------DIERDKILTAKAALEYGLVDQV 220

Query: 228 GGQEEV 233
               + 
Sbjct: 221 LESRKA 226


>gi|194015072|ref|ZP_03053689.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Bacillus pumilus ATCC 7061]
 gi|194014098|gb|EDW23663.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Bacillus pumilus ATCC 7061]
          Length = 242

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 67/194 (34%), Gaps = 25/194 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  + ++     L++ L++ GG   AG AI   +  +      I      +   
Sbjct: 65  EHVIPQIVAVEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 124

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +SC  + I    T  +  + +      V    + L                    ++
Sbjct: 125 PIAVSCDYSYIAETATMTIHPVRLTGLVIGVPQTFEYLD-------------------KM 165

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + +  +    + +   F  L+    N+  D       G    G EA + GL++ VGG 
Sbjct: 166 QERVINFVTSHSNITEEKFKELMFSKGNLTRDI------GTNVVGHEAAEYGLMNEVGGV 219

Query: 231 EEVWQSLYALGVDQ 244
            +  + L  L  ++
Sbjct: 220 GQAIKKLNELIGER 233


>gi|70731346|ref|YP_261087.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           fluorescens Pf-5]
 gi|110816462|sp|Q4K9J6|CLPP_PSEF5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|68345645|gb|AAY93251.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           fluorescens Pf-5]
          Length = 211

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 60/197 (30%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     +  ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 45  VIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L + A         S V     L  +      ++     I  +  
Sbjct: 105 STTCIGQACSMGAFLLTAGAPGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFI-- 162

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L+++      ++     +     +  
Sbjct: 163 ----------------------------RERLNTLMAKHSGRTLEEIERDTNRDNFMSAE 194

Query: 217 EAKKVGLIDVVGGQEEV 233
            A++ GLID V  Q   
Sbjct: 195 AAREYGLIDEVINQRPA 211


>gi|147797194|emb|CAN64666.1| hypothetical protein VITISV_024612 [Vitis vinifera]
          Length = 221

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++ +  + + L+SPGG+  AG AI+  +Q +++  
Sbjct: 36  IVCINGPISDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGAVSAGLAIYDTMQYIRSPV 95

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + +        Y      +      I  V  
Sbjct: 96  NTICLGQAASMGSLLLAAGAKGERRALPNATIMIHQPSGGYSGQAKDMTIHTKQIIRV-- 153

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                       +     L ++      D      D   + T  
Sbjct: 154 ----------------------------WDSLNALYAKHTGQSLDIIQKNMDRDYFMTPE 185

Query: 217 EAKKVGLIDVVGG 229
           EAK+ G+ID V  
Sbjct: 186 EAKEFGIIDEVID 198


>gi|134300444|ref|YP_001113940.1| peptidase S14, ClpP [Desulfotomaculum reducens MI-1]
 gi|134053144|gb|ABO51115.1| peptidase S14, ClpP [Desulfotomaculum reducens MI-1]
          Length = 258

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 60/184 (32%), Gaps = 31/184 (16%)

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117
             +++      + + ++S GGS + G AI+  +++   +K     +   A S   +I+ A
Sbjct: 48  NELAKYPDVKEIKIFINSYGGSVFEGTAIYSQLRRHPAQKT--VYIDGFACSVASVIAMA 105

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
            + ++  + +++               L K    + ++ +                    
Sbjct: 106 GDRVIMPKNTMMMIHNAWNIVAGNATQLRKAADDLDTIMAG------------------- 146

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQS 236
                    +    L   +  I  +K + L D   W T  +  + G  D +  ++     
Sbjct: 147 ---------NRQSYLQKSNGKITEEKLIELLDAETWLTAEQCIEYGFADELLEKDADLTE 197

Query: 237 LYAL 240
              L
Sbjct: 198 AKQL 201


>gi|319891770|ref|YP_004148645.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161466|gb|ADV05009.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 195

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 67/197 (34%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  ++ ++  +   D+   + + ++SPGGS  AG AI+  IQ +K   
Sbjct: 29  IIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + V     L         ++           
Sbjct: 89  QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAK------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216
                                   +  +     +++SE    P +K    +D     T  
Sbjct: 142 -----------------------HILRTRERLNKILSELTGQPIEKIEKDTDRDNFLTAQ 178

Query: 217 EAKKVGLIDVVGGQEEV 233
           EAK+ GLID V   E+ 
Sbjct: 179 EAKEYGLIDEVMEPEKA 195


>gi|297737943|emb|CBI27144.3| unnamed protein product [Vitis vinifera]
          Length = 209

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++ +  + + L+SPGG+  AG AI+  +Q +++  
Sbjct: 24  IVCINGPISDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGAVSAGLAIYDTMQYIRSPV 83

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + +        Y      +      I  V  
Sbjct: 84  NTICLGQAASMGSLLLAAGAKGERRALPNATIMIHQPSGGYSGQAKDMTIHTKQIIRV-- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                       +     L ++      D      D   + T  
Sbjct: 142 ----------------------------WDSLNALYAKHTGQSLDIIQKNMDRDYFMTPE 173

Query: 217 EAKKVGLIDVVGG 229
           EAK+ G+ID V  
Sbjct: 174 EAKEFGIIDEVID 186


>gi|319644956|ref|ZP_07999189.1| YqeZ protein [Bacillus sp. BT1B_CT2]
 gi|317392765|gb|EFV73559.1| YqeZ protein [Bacillus sp. BT1B_CT2]
          Length = 439

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 61/133 (45%), Gaps = 4/133 (3%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISR 62
           +LKK +  +V L+   +  +       V+ +   V  I I   +E    + +ER  + + 
Sbjct: 2   LLKKFR-IFVALACGFVLFLLLGVHLTVKADGDTVYVIPIEETVEKGLSKFLERSFQEAE 60

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           D +A  +I+ +++PGG+  A   +   I    +  PV   V+  A SAG  ++  ++ I 
Sbjct: 61  DMNAKHIILDINTPGGAVDAVLDMADTI--HNSDIPVTAYVNRRALSAGAYLALNADDIY 118

Query: 123 AAETSLVGSIGVL 135
            A    +G+  ++
Sbjct: 119 MAPGGKMGAAAII 131


>gi|258564300|ref|XP_002582895.1| clp protease [Uncinocarpus reesii 1704]
 gi|237908402|gb|EEP82803.1| clp protease [Uncinocarpus reesii 1704]
          Length = 222

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 64/195 (32%), Gaps = 31/195 (15%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++++S    ++ ++  +  D+    + + ++SPGGS  AG AI+  +  +++  
Sbjct: 47  IICLNGEVDESVSASIVAQLLFLEADNPEKQISLYINSPGGSVTAGLAIYDTMTYIQSPV 106

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L             S +        Y      +            
Sbjct: 107 STICIGQAASMGSLLLCGGEPGKRFCLPHSSIMIHQPSGGYFGQATDIAIHA-------- 158

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
              K       ++N    + +   +                   D+   L +   + G +
Sbjct: 159 ---KEILRVRKQLNEIYKRHLTKEI-----------------SLDEIEKLMERDYFMGAS 198

Query: 217 EAKKVGLIDVVGGQE 231
           EA  +G++D +  + 
Sbjct: 199 EALGMGIVDGIMDRR 213


>gi|254797097|ref|YP_003081935.1| Clp protease [Neorickettsia risticii str. Illinois]
 gi|254590339|gb|ACT69701.1| Clp protease [Neorickettsia risticii str. Illinois]
          Length = 209

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G IED     ++ ++  +  ++    + + ++SPGG   AG +I+  +Q ++   
Sbjct: 37  VVFLTGPIEDGMASLIVAQLLFLEAENPEKDIFMYINSPGGVVTAGLSIYDTMQYIRPSV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +A++  L S A     A   S V               ++           
Sbjct: 97  STVCVGQAASAASLILASGAEGKRFALPHSRVMVHQPSGGVRGQATDMEIHVKE------ 150

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +         +  +       K   L +   + +  
Sbjct: 151 ------------------------ILQLKRMINEIYRKHTGETIKKIETLLERDTFLSPE 186

Query: 217 EAKKVGLIDVVGG 229
           EAKKVGLID +  
Sbjct: 187 EAKKVGLIDDIIT 199


>gi|257440282|ref|ZP_05616037.1| Clp protease [Faecalibacterium prausnitzii A2-165]
 gi|257197316|gb|EEU95600.1| Clp protease [Faecalibacterium prausnitzii A2-165]
          Length = 228

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 59/192 (30%), Gaps = 33/192 (17%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  +  D +   L+V +++ GG   AG A+   I  +      +      +   
Sbjct: 59  EHVIPQLVAVQEDPAVEGLLVLINTVGGDVEAGLALAELIASISKPSATVVLGGGHSIGI 118

Query: 111 GYLISCASNIIVAAETSLVGSI----GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                 A    +    ++        G++   P    + +++   I    +       + 
Sbjct: 119 PL-AVSARRSFIVPTATMTVHPVRHSGMILGVPQTMRWFEQMQERITGFVAGHSGITAAR 177

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
           +SE+                                       G +  G +A K  LID 
Sbjct: 178 YSEL-----------------------MLRTGELVMDV-----GTMLDGKKAVKEKLIDQ 209

Query: 227 VGGQEEVWQSLY 238
           +GG  +  + LY
Sbjct: 210 LGGISDALEWLY 221


>gi|260892392|ref|YP_003238489.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ammonifex
           degensii KC4]
 gi|260864533|gb|ACX51639.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ammonifex
           degensii KC4]
          Length = 200

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 65/195 (33%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G I+D  +  +I ++  +  +D    + + ++SPGG   AG AI+  +Q ++   
Sbjct: 31  IIFIGGPIDDHLANLVIAQLLFLEAEDPEKDIHLYINSPGGLVTAGMAIYDTMQYIRPDV 90

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L + A     A   + +     L  +      ++           
Sbjct: 91  STICLGQAASMAAFLLAAGAKGKRYALPYARIMLHQPLGGFQGQATEVEIHARE------ 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +         L+S+    P +K    +D   + T  
Sbjct: 145 ------------------------IMRMRQVLNELLSKHTGQPVEKIAQDTDRDFFMTAQ 180

Query: 217 EAKKVGLIDVVGGQE 231
           +AK  GLID V    
Sbjct: 181 QAKDYGLIDEVITMR 195


>gi|77459919|ref|YP_349426.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           fluorescens Pf0-1]
 gi|92087005|sp|Q3K9W9|CLPP_PSEPF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|77383922|gb|ABA75435.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudomonas
           fluorescens Pf0-1]
          Length = 211

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 60/197 (30%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     +  ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 45  VIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L + A         S V     L  +      ++     I  +  
Sbjct: 105 STTCIGQACSMGAFLLTAGAPGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFI-- 162

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L+++      ++     +     +  
Sbjct: 163 ----------------------------RERLNTLMAKHSGRTLEEIERDTNRDNFMSAE 194

Query: 217 EAKKVGLIDVVGGQEEV 233
            AK+ GLID V  Q   
Sbjct: 195 AAKEYGLIDEVINQRPA 211


>gi|70727122|ref|YP_254036.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           haemolyticus JCSC1435]
 gi|124013829|sp|Q4L4J5|CLPP_STAHJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|68447846|dbj|BAE05430.1| clpP [Staphylococcus haemolyticus JCSC1435]
          Length = 195

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 66/196 (33%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  ++ ++  +   DS   + + ++SPGGS  AG AI+  IQ +K   
Sbjct: 29  IIMLGSAIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + V     L         ++           
Sbjct: 89  QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216
                                   +  +     ++++E      +K    +D     T  
Sbjct: 142 -----------------------HILKTREKLNKILAERTGQSIEKIQKDTDRDNFLTAD 178

Query: 217 EAKKVGLIDVVGGQEE 232
           EAK+ GLID V   E+
Sbjct: 179 EAKEYGLIDNVMQPED 194


>gi|71000128|ref|XP_754781.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aspergillus
           fumigatus Af293]
 gi|66852418|gb|EAL92743.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aspergillus
           fumigatus Af293]
 gi|159127789|gb|EDP52904.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aspergillus
           fumigatus A1163]
          Length = 175

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 52/183 (28%), Gaps = 27/183 (14%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           S  ++ ++  +  D+    + + ++SPGGS  AG AI+  +  + +    I      +  
Sbjct: 2   SASIVAQLLFLEADNPQKPIHLYINSPGGSVTAGLAIYDTMTYIASPVSTICVGQAASMG 61

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           +  L             S +                                        
Sbjct: 62  SLLLCGGDPGKRYCLPHSSIMIHQPSG---------------------GYFGQASDIAIH 100

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-AEAKKVGLIDVVG 228
                    Q       H   + V     +  ++   L +   + G  EA ++G++D + 
Sbjct: 101 AKEILRVRNQLNKIYQRHLTGKKV-----LSLEEIEKLMERDYFMGAQEALEMGIVDEIL 155

Query: 229 GQE 231
            + 
Sbjct: 156 DRR 158


>gi|167037548|ref|YP_001665126.1| hypothetical protein Teth39_1135 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115963|ref|YP_004186122.1| hypothetical protein Thebr_1163 [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856382|gb|ABY94790.1| protein of unknown function DUF107 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929054|gb|ADV79739.1| protein of unknown function DUF107 [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 436

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 97/288 (33%), Gaps = 34/288 (11%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-QELIERIERISR 62
           +  ++ T  + L    L    F+  S +      V  + IRG ++    + ++R    ++
Sbjct: 1   MRSRVGTFVIFLITALLFFSLFTNVSGLPKEKGEVLFVPIRGTVDPGMAKFVKRAVEEAK 60

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           +  A  L+  +++PGG   A   I + I  + +  P    V+  A SAG LI+ +   + 
Sbjct: 61  ETEAALLVFEINTPGGLVDAAVEISQTI--LNSPVPTAAYVNSQATSAGVLIAISCENLY 118

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
            A  S +                     + ++V                    +     +
Sbjct: 119 MAPGSTI--------------------GAAETVPKEEKTISYWRSKLEGAAERRGRDPRI 158

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALG 241
            ++       +        +           T  +A ++ L D +   ++E+   L    
Sbjct: 159 VAAMADADVEI--------EGLKERGKILSLTAKKALELKLADGIAADRKELLTVLG--V 208

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
            D+ ++++K +   +   F     ++   L    I ++ +    G  A
Sbjct: 209 GDRDVKEVKPFFSERIASFVTSPFVAPMFLTIGFIGIITEVLTPGFGA 256


>gi|15923758|ref|NP_371292.1| ATP-dependent Clp protease proteolytic subunit-like protein
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926445|ref|NP_373978.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus N315]
 gi|21282459|ref|NP_645547.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49483025|ref|YP_040249.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|49485640|ref|YP_042861.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57650109|ref|YP_185707.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus COL]
 gi|82750474|ref|YP_416215.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus RF122]
 gi|87161484|ref|YP_493453.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194551|ref|YP_499347.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|148267228|ref|YP_001246171.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150393277|ref|YP_001315952.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151220948|ref|YP_001331770.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156979096|ref|YP_001441355.1| ATP-dependent Clp protease proteolytic subunit homologue
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509038|ref|YP_001574697.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|221141842|ref|ZP_03566335.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253317258|ref|ZP_04840471.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|253731397|ref|ZP_04865562.1| ATP-dependent Clp protease proteolytic subunit family protein
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253732783|ref|ZP_04866948.1| ATP-dependent Clp protease proteolytic subunit family protein
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005559|ref|ZP_05144160.2| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257424888|ref|ZP_05601315.1| clp protease [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427556|ref|ZP_05603955.1| clp protease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430187|ref|ZP_05606571.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus 68-397]
 gi|257432888|ref|ZP_05609248.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257435792|ref|ZP_05611840.1| clp protease [Staphylococcus aureus subsp. aureus M876]
 gi|257794910|ref|ZP_05643889.1| clp protease [Staphylococcus aureus A9781]
 gi|258418226|ref|ZP_05682491.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus
           aureus A9763]
 gi|258421524|ref|ZP_05684449.1| clp protease [Staphylococcus aureus A9719]
 gi|258423417|ref|ZP_05686308.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A9635]
 gi|258439133|ref|ZP_05690177.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A9299]
 gi|258440939|ref|ZP_05690774.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus
           aureus A8115]
 gi|258445769|ref|ZP_05693946.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus A6300]
 gi|258449581|ref|ZP_05697683.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus A6224]
 gi|258452184|ref|ZP_05700200.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A5948]
 gi|258453981|ref|ZP_05701953.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A5937]
 gi|262049552|ref|ZP_06022422.1| hypothetical protein SAD30_0974 [Staphylococcus aureus D30]
 gi|262052698|ref|ZP_06024889.1| hypothetical protein SA930_1868 [Staphylococcus aureus 930918-3]
 gi|269202390|ref|YP_003281659.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282895064|ref|ZP_06303285.1| Clp protease [Staphylococcus aureus A8117]
 gi|282903398|ref|ZP_06311289.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905178|ref|ZP_06313035.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908157|ref|ZP_06315988.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910415|ref|ZP_06318219.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913610|ref|ZP_06321399.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus M899]
 gi|282916110|ref|ZP_06323873.1| Clp protease [Staphylococcus aureus subsp. aureus D139]
 gi|282918561|ref|ZP_06326298.1| Clp protease [Staphylococcus aureus subsp. aureus C427]
 gi|282922066|ref|ZP_06329763.1| Clp protease [Staphylococcus aureus A9765]
 gi|282923527|ref|ZP_06331207.1| Clp protease [Staphylococcus aureus subsp. aureus C101]
 gi|282926635|ref|ZP_06334265.1| Clp protease [Staphylococcus aureus A10102]
 gi|283769931|ref|ZP_06342823.1| ATP-dependent Clp protease subunit [Staphylococcus aureus subsp.
           aureus H19]
 gi|283957600|ref|ZP_06375053.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|284023791|ref|ZP_06378189.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus 132]
 gi|293500653|ref|ZP_06666504.1| Clp protease [Staphylococcus aureus subsp. aureus 58-424]
 gi|293509601|ref|ZP_06668312.1| Clp protease [Staphylococcus aureus subsp. aureus M809]
 gi|293524187|ref|ZP_06670874.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus M1015]
 gi|294850496|ref|ZP_06791225.1| Clp protease [Staphylococcus aureus A9754]
 gi|295406492|ref|ZP_06816298.1| Clp protease [Staphylococcus aureus A8819]
 gi|295427347|ref|ZP_06819982.1| Clp protease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296276994|ref|ZP_06859501.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus MR1]
 gi|297208504|ref|ZP_06924933.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297245218|ref|ZP_06929092.1| Clp protease [Staphylococcus aureus A8796]
 gi|297590298|ref|ZP_06948937.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|300912596|ref|ZP_07130039.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304381609|ref|ZP_07364259.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|54036854|sp|P63786|CLPP_STAAW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|54036862|sp|P99089|CLPP_STAAN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|54040892|sp|P63785|CLPP_STAAM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56748671|sp|Q6GB62|CLPP_STAAS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56748685|sp|Q6GIM3|CLPP_STAAR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460165|sp|Q5HHQ0|CLPP_STAAC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|90183185|sp|Q2YSF8|CLPP_STAAB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116243169|sp|Q2G036|CLPP_STAA8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|124013828|sp|Q2FIM5|CLPP_STAA3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214713|sp|A7WZR9|CLPP_STAA1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|172048797|sp|A6QF76|CLPP_STAAE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082468|sp|A6TZP7|CLPP_STAA2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082469|sp|A5IQX2|CLPP_STAA9 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082470|sp|A8Z045|CLPP_STAAT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|13700659|dbj|BAB41956.1| clpP [Staphylococcus aureus subsp. aureus N315]
 gi|14246537|dbj|BAB56930.1| ATP-dependent Clp protease proteolytic subunit homologue
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|21203896|dbj|BAB94595.1| clpP [Staphylococcus aureus subsp. aureus MW2]
 gi|49241154|emb|CAG39832.1| putative ATP-dependent Clp protease proteolytic subunit
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49244083|emb|CAG42509.1| putative ATP-dependent Clp protease proteolytic subunit
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284295|gb|AAW36389.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus COL]
 gi|82656005|emb|CAI80410.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus RF122]
 gi|87127458|gb|ABD21972.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202109|gb|ABD29919.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147740297|gb|ABQ48595.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149945729|gb|ABR51665.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus JH1]
 gi|150373748|dbj|BAF67008.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156721231|dbj|BAF77648.1| ATP-dependent Clp protease proteolytic subunit homologue
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|160367847|gb|ABX28818.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724847|gb|EES93576.1| ATP-dependent Clp protease proteolytic subunit family protein
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253729257|gb|EES97986.1| ATP-dependent Clp protease proteolytic subunit family protein
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|257272458|gb|EEV04581.1| clp protease [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275749|gb|EEV07222.1| clp protease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279384|gb|EEV09985.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282303|gb|EEV12438.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257284983|gb|EEV15102.1| clp protease [Staphylococcus aureus subsp. aureus M876]
 gi|257788882|gb|EEV27222.1| clp protease [Staphylococcus aureus A9781]
 gi|257839019|gb|EEV63498.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus
           aureus A9763]
 gi|257842450|gb|EEV66874.1| clp protease [Staphylococcus aureus A9719]
 gi|257846478|gb|EEV70501.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A9635]
 gi|257847705|gb|EEV71702.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A9299]
 gi|257852453|gb|EEV76374.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus
           aureus A8115]
 gi|257855345|gb|EEV78283.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus A6300]
 gi|257857089|gb|EEV79988.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus A6224]
 gi|257860399|gb|EEV83231.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A5948]
 gi|257863846|gb|EEV86602.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A5937]
 gi|259159395|gb|EEW44448.1| hypothetical protein SA930_1868 [Staphylococcus aureus 930918-3]
 gi|259162388|gb|EEW46960.1| hypothetical protein SAD30_0974 [Staphylococcus aureus D30]
 gi|262074680|gb|ACY10653.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus ED98]
 gi|269940345|emb|CBI48722.1| putative ATP-dependent Clp protease proteolyticsubunit
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282314395|gb|EFB44785.1| Clp protease [Staphylococcus aureus subsp. aureus C101]
 gi|282317695|gb|EFB48067.1| Clp protease [Staphylococcus aureus subsp. aureus C427]
 gi|282320058|gb|EFB50405.1| Clp protease [Staphylococcus aureus subsp. aureus D139]
 gi|282322642|gb|EFB52964.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus M899]
 gi|282325807|gb|EFB56115.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327822|gb|EFB58104.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331585|gb|EFB61097.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282591528|gb|EFB96600.1| Clp protease [Staphylococcus aureus A10102]
 gi|282593724|gb|EFB98716.1| Clp protease [Staphylococcus aureus A9765]
 gi|282596353|gb|EFC01314.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus C160]
 gi|282762560|gb|EFC02699.1| Clp protease [Staphylococcus aureus A8117]
 gi|283460078|gb|EFC07168.1| ATP-dependent Clp protease subunit [Staphylococcus aureus subsp.
           aureus H19]
 gi|283470062|emb|CAQ49273.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus ST398]
 gi|283791051|gb|EFC29866.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|285816470|gb|ADC36957.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus 04-02981]
 gi|290921150|gb|EFD98211.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291095658|gb|EFE25919.1| Clp protease [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467698|gb|EFF10213.1| Clp protease [Staphylococcus aureus subsp. aureus M809]
 gi|294822634|gb|EFG39074.1| Clp protease [Staphylococcus aureus A9754]
 gi|294968637|gb|EFG44660.1| Clp protease [Staphylococcus aureus A8819]
 gi|295128735|gb|EFG58366.1| Clp protease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296886759|gb|EFH25663.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297177889|gb|EFH37138.1| Clp protease [Staphylococcus aureus A8796]
 gi|297576597|gb|EFH95312.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|298694101|gb|ADI97323.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus ED133]
 gi|300886842|gb|EFK82044.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|302332479|gb|ADL22672.1| putative ATP-dependent Clp protease proteolytic subunit
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|302750665|gb|ADL64842.1| putative ATP-dependent Clp protease proteolytic subunit
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304339972|gb|EFM05916.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312438803|gb|ADQ77874.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|312829260|emb|CBX34102.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129024|gb|EFT85021.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315194387|gb|EFU24779.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315196246|gb|EFU26600.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320139896|gb|EFW31757.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320142013|gb|EFW33841.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323438624|gb|EGA96368.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus O11]
 gi|323441949|gb|EGA99586.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus O46]
 gi|329313489|gb|AEB87902.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329723806|gb|EGG60334.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus 21189]
 gi|329724642|gb|EGG61149.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329729644|gb|EGG66045.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 195

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 65/192 (33%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  QI+D  +  ++ ++  +   DS   + + ++SPGGS  AG AI+  IQ +K   
Sbjct: 29  IIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + V     L         ++           
Sbjct: 89  QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216
                                   +  +     R++SE      +K    +D     T  
Sbjct: 142 -----------------------HILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAE 178

Query: 217 EAKKVGLIDVVG 228
           EAK+ GLID V 
Sbjct: 179 EAKEYGLIDEVM 190


>gi|261205022|ref|XP_002627248.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239592307|gb|EEQ74888.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239611539|gb|EEQ88526.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           dermatitidis ER-3]
          Length = 248

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 60/195 (30%), Gaps = 31/195 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++++  S  ++ ++  +  D+    + + ++SPGGS  AG A++  +  +    
Sbjct: 62  IVCLNGEVDETLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISAPV 121

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L             S V        Y      +            
Sbjct: 122 STICVGQAASMGSLLLCGGHPGKRYCLPHSSVMVHQPSGGYFGQATDIAIHA-------- 173

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
              K       ++N      +                    +  D+     +   + G  
Sbjct: 174 ---KEILRVRRQLNEIYKLHLTKE-----------------MSLDEIEKWMERDYFMGAR 213

Query: 217 EAKKVGLIDVVGGQE 231
           EA ++G++D +  + 
Sbjct: 214 EALEMGIVDEILDRR 228


>gi|30263954|ref|NP_846331.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Ames]
 gi|47778244|ref|YP_020737.2| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49186802|ref|YP_030054.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Sterne]
 gi|165872161|ref|ZP_02216800.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0488]
 gi|167640964|ref|ZP_02399221.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0193]
 gi|254683648|ref|ZP_05147508.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254735992|ref|ZP_05193698.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254743884|ref|ZP_05201567.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Kruger B]
 gi|254754338|ref|ZP_05206373.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Vollum]
 gi|254757970|ref|ZP_05209997.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Australia 94]
 gi|30258598|gb|AAP27817.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Ames]
 gi|47551949|gb|AAT33212.2| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49180729|gb|AAT56105.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Sterne]
 gi|164712108|gb|EDR17646.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0488]
 gi|167511014|gb|EDR86403.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0193]
          Length = 251

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 80/260 (30%), Gaps = 50/260 (19%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSP 76
           +       +   A + I G+I            S      ++ +  D     + + ++SP
Sbjct: 9   FFQMKASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDD--IKTINLYINSP 66

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GGS +   AI   +Q+   +  +I+ +  + AS   ++   S+ I+    S++       
Sbjct: 67  GGSVFETMAIIAMLQRHHAK--IISYIDGIGASCASVLPMISDKIIMYANSMMMIHN--- 121

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
            + Y     D+L  +   ++                           +       L    
Sbjct: 122 AWTYASGNADQLRKAADDIE-------------------------RINQSMVQHYLTRAG 156

Query: 197 RNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
             +  D    L D   W +  EA   GL D +         L         + +K++   
Sbjct: 157 DKLDEDTLKQLLDAETWLSAEEAMGYGLCDEIIPANNATACL-------DEKWMKEYKNI 209

Query: 256 KNYWFCDLKNLSISSLLEDT 275
                    N+S + +LE  
Sbjct: 210 PQQLVNAQANISSNEMLERQ 229


>gi|237807855|ref|YP_002892295.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Tolumonas
           auensis DSM 9187]
 gi|237500116|gb|ACQ92709.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Tolumonas
           auensis DSM 9187]
          Length = 207

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED     ++ ++  +  ++    + + ++SPGGS  AG AI+  ++ +K   
Sbjct: 42  VIFLTGQVEDQMANLIVAQLLFLESENPDKDIYIYINSPGGSVTAGMAIYDTLKFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L +          ++ V     L  +                   
Sbjct: 102 STVCMGQACSMGAFLLSAGTKGKRFCLPSARVMIHQPLGGFQGQ---------------- 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            +Q+    +         L++E    P ++           +  
Sbjct: 146 --------------ASDIQIHAMEILKIKERLNNLLAEHTGQPLERIERDTDRDNFMSAD 191

Query: 217 EAKKVGLIDVV 227
           +A + GL+D +
Sbjct: 192 QAVEYGLVDAI 202


>gi|262381176|ref|ZP_06074314.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296353|gb|EEY84283.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 459

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 96/263 (36%), Gaps = 27/263 (10%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALI 70
           ++  L  + ++              +  I I+ +I+++  +     +    +  +A A++
Sbjct: 4   LLTILTAIILILAISLQSEAKEKSLIYTIDIKKEIDNTTWIYLHNGLSEAKQL-NADAIL 62

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + +++ GG   + +++  AI  + +  PV   +   AASAG LIS A   I   + + +G
Sbjct: 63  LHMNTYGGLLESADSMRTAI--LYSPIPVYVFIDNNAASAGALISIACKKIYMRKGANIG 120

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           +  V+ Q     P   +  +      ++  + + +     +                   
Sbjct: 121 AATVVNQTGAALPDKYQSYMRSMIRSTAEAQGKDTLIQNGDTIYKWKRD----------- 169

Query: 191 RLVSESRNIPYDKTLVLSDGR---IWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSI 246
            L++E+          L D       T  EA K G  D +    ++V             
Sbjct: 170 PLIAEAMVDDRVIVPNLIDSGKVLTLTSQEALKWGYCDGIAESPDQVITEYIG----CKD 225

Query: 247 RKIKDWNPPKNYWFCDLKNLSIS 269
            +IK + P    WF ++K   +S
Sbjct: 226 YEIKSYEP---SWFDNVKGFFMS 245


>gi|312128165|ref|YP_003993039.1| ATP-dependent clp protease, proteolytic subunit clpp
           [Caldicellulosiruptor hydrothermalis 108]
 gi|312134617|ref|YP_004001955.1| ATP-dependent clp protease, proteolytic subunit clpp
           [Caldicellulosiruptor owensensis OL]
 gi|312792981|ref|YP_004025904.1| ATP-dependent clp protease, proteolytic subunit clpp
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312876447|ref|ZP_07736431.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311774668|gb|ADQ04155.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor owensensis OL]
 gi|311778184|gb|ADQ07670.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311796805|gb|EFR13150.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180121|gb|ADQ40291.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 195

 Score = 48.1 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I D     ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 30  IVILSGEITDDIASLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGFAIYDTMQYIKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   S +     L                      
Sbjct: 90  STICVGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGVRGQ---------------- 133

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            +++  + +    +   +++SE    P +     +D   + T  
Sbjct: 134 --------------ATDIKIHAEWILKIKNRINKILSERTGQPIEVIERDTDRDFFMTAE 179

Query: 217 EAKKVGLIDVV 227
           EA K G+ID V
Sbjct: 180 EALKYGIIDKV 190


>gi|304395499|ref|ZP_07377382.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea sp.
           aB]
 gi|304356793|gb|EFM21157.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea sp.
           aB]
          Length = 207

 Score = 48.1 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  ++ +K   
Sbjct: 42  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMKFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +           S V     L  Y      ++           
Sbjct: 102 STICMGQACSMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQASDIEIHARE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++E      ++        R  + +
Sbjct: 156 ------------------------ILKVKQRMNELMAEHTGKTLEEIERDTERDRFLSAS 191

Query: 217 EAKKVGLIDVVGGQEE 232
           EA + GL+D +    +
Sbjct: 192 EAVEYGLVDSILTHRQ 207


>gi|228960167|ref|ZP_04121825.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228799517|gb|EEM46476.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 240

 Score = 48.1 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 80/256 (31%), Gaps = 50/256 (19%)

Query: 31  VEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSA 80
               +   A + I G+I            S      ++ +  D     + + ++SPGGS 
Sbjct: 2   KASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDD--IETINLYINSPGGSV 59

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           +   AI   +Q+ + +  VI+ +  + AS   ++   S+ I+    S++        + Y
Sbjct: 60  FETMAIIAMLQRHQAK--VISYIDGIGASCASVLPMISDKIIMYANSMMMIHN---AWTY 114

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
                D+L  +   ++                           +       L      + 
Sbjct: 115 ASGNADQLRKAADDIE-------------------------RINQSMVQHYLTRAGEKLD 149

Query: 201 YDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
            D    L D   W +  EA   GL D +         L         + +K++       
Sbjct: 150 EDTLKQLLDAETWLSAEEAMGYGLCDEIISANNAAACL-------DEKWMKEYKNIPQQL 202

Query: 260 FCDLKNLSISSLLEDT 275
                N+S + +LE  
Sbjct: 203 VNAQANISSNEMLERQ 218


>gi|168186894|ref|ZP_02621529.1| serine protease [Clostridium botulinum C str. Eklund]
 gi|169295178|gb|EDS77311.1| serine protease [Clostridium botulinum C str. Eklund]
          Length = 246

 Score = 48.1 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 57/176 (32%), Gaps = 31/176 (17%)

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117
           +++   ++ + + + ++S GG    G AI+  +++   +K     V   A S   +I+ A
Sbjct: 49  KQLESINNVSNINIFINSYGGEVKEGLAIYNQLKRHPAQKT--VYVDGFACSIASVIAMA 106

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
            + ++    +L+               L K    ++ +                      
Sbjct: 107 GDKVIMGTNTLMMIHHAAMGAWGNAEELRKAANDVEVIDK-------------------- 146

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEE 232
                         L      +  +    L D + W    +  + GL D + G+E+
Sbjct: 147 --------ASCSSYLTKAGDKLSEETLNQLLDNQTWLNAEQCLQYGLCDEIAGKED 194


>gi|157692363|ref|YP_001486825.1| endopeptidase ClpP [Bacillus pumilus SAFR-032]
 gi|157681121|gb|ABV62265.1| S14 family endopeptidase ClpP [Bacillus pumilus SAFR-032]
          Length = 249

 Score = 48.1 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 67/194 (34%), Gaps = 25/194 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  + ++     L++ L++ GG   AG AI   +  +      I      +   
Sbjct: 72  EHVIPQIVAVEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 131

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +SC  + I    T  +  + +      V    + L                    ++
Sbjct: 132 PIAVSCDYSYIAETATMTIHPVRLTGLVIGVPQTFEYLD-------------------KM 172

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + +  +    + +   F  L+    N+  D       G    G EA + GL++ VGG 
Sbjct: 173 QERVINFVTSHSNITEEKFKELMFSKGNLTRDI------GTNVVGHEAAEYGLMNEVGGV 226

Query: 231 EEVWQSLYALGVDQ 244
            +  + L  L  ++
Sbjct: 227 GQAIKKLNELIGER 240


>gi|284047883|ref|YP_003398222.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidaminococcus fermentans DSM 20731]
 gi|283952104|gb|ADB46907.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidaminococcus fermentans DSM 20731]
          Length = 197

 Score = 48.1 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+IED  +  +I ++  +  +D    + + ++SPGGS  AG AI+  +Q ++   
Sbjct: 29  IIFVTGEIEDHMANLIIAQLLFLESEDPDKDVHLYINSPGGSVSAGLAIYDTMQYIRPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++  L +       A   S V     L         ++     I  ++ 
Sbjct: 89  STICVGMAASMASVLLAAGTKGKRYALPHSRVMIHQPLGGAQGQATDIEIHAREILRIR- 147

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                            ++++       ++           T  
Sbjct: 148 -----------------------------EEMNQILASHTGQTPEQIRLDTERDHFMTAE 178

Query: 217 EAKKVGLIDVV 227
           EA   GLID V
Sbjct: 179 EAANYGLIDQV 189


>gi|237751093|ref|ZP_04581573.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter bilis
           ATCC 43879]
 gi|229373538|gb|EEO23929.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter bilis
           ATCC 43879]
          Length = 196

 Score = 48.1 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 62/195 (31%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I+DS    ++ ++  +  +D    + + ++SPGGS  +G +I+  +  +K   
Sbjct: 29  IIMLSGEIDDSVSSSIVAQLLFLEAEDPQKDVFLYINSPGGSVTSGFSIYDTMNYIKPDI 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L         A   + +     L         ++           
Sbjct: 89  CTICVGQAASMGAFLLSCGTKGKRYALPHARIMIHQPLGGARGQATDIE----------- 137

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                              +    +         +++ +      K     +   + +  
Sbjct: 138 -------------------IQAKEILRLKTIINDILAANTGQSVKKITQDCERDFYMSAD 178

Query: 217 EAKKVGLIDVVGGQE 231
           EA+K GLID V  + 
Sbjct: 179 EAQKYGLIDSVMTRS 193


>gi|261405606|ref|YP_003241847.1| hypothetical protein GYMC10_1757 [Paenibacillus sp. Y412MC10]
 gi|261282069|gb|ACX64040.1| protein of unknown function DUF107 [Paenibacillus sp. Y412MC10]
          Length = 453

 Score = 48.1 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 94/237 (39%), Gaps = 23/237 (9%)

Query: 5   LKKIKTRY--VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERIS 61
           +++  T    V++ L+++ +      S +  N   V  I ++  IE      +ER  + +
Sbjct: 7   MRRFLTLTAAVVMMLISIGMYAAPMKSAMAANIGSVYVIPVKQPIERGLTSFMERGFKEA 66

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
           ++ +A  +++ + +PGG       I   ++   +  P++  +   AASAG  I+  ++ I
Sbjct: 67  KEMAAGLIVLEIDTPGGLVDQAGEIATLMK--GSEIPIVAYITGDAASAGSYIALNADKI 124

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
             +E S++G+  ++            +            K++ +  +E   +  ++   +
Sbjct: 125 AMSEGSMIGAAYMVDARGNRIEDAKLVSW---------WKSKMAGAAEAGGRNKEIAMGM 175

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSL 237
            D +    +  +          T    +G   T  EA K G  D +    EEV   +
Sbjct: 176 ADINLKVDMPEIGL--------TKQPGEGLSLTHDEALKTGYADTIANSTEEVITWM 224


>gi|145629849|ref|ZP_01785642.1| putative Clp-like protease [Haemophilus influenzae 22.1-21]
 gi|144977753|gb|EDJ87697.1| putative Clp-like protease [Haemophilus influenzae 22.1-21]
          Length = 680

 Score = 48.1 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 76/254 (29%), Gaps = 42/254 (16%)

Query: 30  HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
            ++  +   A I+I  +I      +    + ++      +   + + + SPGG  + G A
Sbjct: 27  SIKAKANDTAEISIYDEIGFWGVSAASFAQDLKDCGN--NIKQINLHIHSPGGDVFDGIA 84

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I+  ++       V   +  +AAS   +I+ A N ++  E +++                
Sbjct: 85  IYNLLKNHPAN--VTVYIDGLAASMASVIAMAGNEVIMPENAMMMIH------------- 129

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
                    ++    +        ++               +  +   +       ++  
Sbjct: 130 -----KPWGIQGGDAEDMRKYADLLDKVE------------NTLIPAYASKTGKTPEELA 172

Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
            +     W  G E  + G  D +        S+ +  ++      K     K+  F    
Sbjct: 173 EMLSAETWLNGKECVEQGFADKLAEPLVAMASIKSRKLEDFENMPKAM---KDMLFKPQG 229

Query: 265 NLSISSLLEDTIPL 278
           N   S+      P 
Sbjct: 230 NAGASAPQATPTPA 243


>gi|194366563|ref|YP_002029173.1| ATP-dependent Clp protease proteolytic subunit [Stenotrophomonas
           maltophilia R551-3]
 gi|194349367|gb|ACF52490.1| Endopeptidase Clp [Stenotrophomonas maltophilia R551-3]
          Length = 202

 Score = 48.1 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 64/200 (32%), Gaps = 33/200 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+++D+    +  ++  +  ++    + + ++SPGG   +G A++  +Q +    
Sbjct: 33  IIFLNGEVDDTVSALVCAQLLFLESENPEKPIHLYINSPGGVISSGLAMYDTMQYISAPV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +                     +    S+   + +  + P  +  L    + +     
Sbjct: 93  HTLC--------------------MGTARSMGSFLLMAGE-PGHRAALANASLHVHQPLG 131

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                    F                 +     RL ++      ++    L   R  +  
Sbjct: 132 GVQGQASDIFIHAEEMQR---------TKQRITRLYAQHCGRSVEEVEQTLDRDRFMSAE 182

Query: 217 EAKKVGLIDVVGGQEEVWQS 236
           +A + GLID V  + +   +
Sbjct: 183 QACEWGLIDQVLLRRDALAA 202


>gi|308185908|ref|YP_003930039.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease,
           heat shock protein F21.5 [Pantoea vagans C9-1]
 gi|308056418|gb|ADO08590.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease,
           heat shock protein F21.5 [Pantoea vagans C9-1]
          Length = 207

 Score = 48.1 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 61/196 (31%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  ++ +K   
Sbjct: 42  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMKFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +           S V     L  Y      ++           
Sbjct: 102 STICMGQACSMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQASDIEIHARE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++E      ++        R  +  
Sbjct: 156 ------------------------ILKVKQRMNELMAEHTGKTLEEIERDTERDRFLSAN 191

Query: 217 EAKKVGLIDVVGGQEE 232
           EA + GL+D +    +
Sbjct: 192 EAVEYGLVDSILTHRQ 207


>gi|297583414|ref|YP_003699194.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           selenitireducens MLS10]
 gi|297141871|gb|ADH98628.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           selenitireducens MLS10]
          Length = 197

 Score = 48.1 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  ++ ++  ++ DD    + + ++SPGGS  AG AI+  +Q +K + 
Sbjct: 29  IIMLGTPIDDNVANSIVAQLLFLAADDPDKDISLYINSPGGSITAGMAIYDTMQFIKPKV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +       A   S V     L         ++           
Sbjct: 89  QTICIGMAASMGAFLLTAGEPGKRYALPNSEVMIHQPLGGAQGQASDIEIHAKR------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216
                                   +        ++++E      ++    +D     + A
Sbjct: 143 ------------------------IVEMKEKLNQILAERTGQDIEQIRKDTDRDNFLSAA 178

Query: 217 EAKKVGLIDVVGG 229
           +AK+ GLID V  
Sbjct: 179 QAKEYGLIDEVMD 191


>gi|326803696|ref|YP_004321514.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651369|gb|AEA01552.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 200

 Score = 48.1 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 62/199 (31%), Gaps = 33/199 (16%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D     +I ++  +   D+   + + ++SPGGS  AG AI+  +Q V    
Sbjct: 29  IIMLSGEVNDDMANSVIAQLLFLDAQDNDKDIYIYINSPGGSVTAGMAIYDTMQFVNADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  LI        A   S V     L         ++           
Sbjct: 89  VTIVTGLAASMGSILLIGGTKGKRYALPHSEVLIHQPLGGVQGQATEIEI---------- 138

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +  +      +++E      DK     D   W T  
Sbjct: 139 --------------------SARHILQTKQTLKEIIAERSGQDIDKVEKDMDRDYWMTAK 178

Query: 217 EAKKVGLIDVVGGQEEVWQ 235
           EAK  G+ID +    +  +
Sbjct: 179 EAKDYGIIDEIMASNQGLK 197


>gi|262276278|ref|ZP_06054087.1| ATP-dependent Clp protease proteolytic subunit [Grimontia hollisae
           CIP 101886]
 gi|262220086|gb|EEY71402.1| ATP-dependent Clp protease proteolytic subunit [Grimontia hollisae
           CIP 101886]
          Length = 207

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 62/196 (31%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQYIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L  +      +      I ++K 
Sbjct: 102 STVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKH 161

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L++E    P +               
Sbjct: 162 ------------------------------RLNTLLAEHTGQPLEVIERDTDRDNFMAAQ 191

Query: 217 EAKKVGLIDVVGGQEE 232
           +A   GL+D V  + +
Sbjct: 192 DAVNYGLVDAVLNKRD 207


>gi|222824462|ref|YP_002576036.1| ATP-dependent ClpAP/ClpXP protease, proteolytic subunit ClpP
           [Campylobacter lari RM2100]
 gi|254763785|sp|B9KDZ6|CLPP_CAMLR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|222539683|gb|ACM64784.1| ATP-dependent ClpAP/ClpXP protease, proteolytic subunit ClpP
           [Campylobacter lari RM2100]
          Length = 196

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D     ++ ++  +  +D    + + ++SPGG   +G +I+  +  +K   
Sbjct: 30  IIMLSGEINDDLAASIVAQLLFLEAEDPQKDIYLYINSPGGVVTSGFSIYDTMNYIKADV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     A   S +     L         ++           
Sbjct: 90  STICIGQAASMGAFLLSCGAPGKRFALPNSRIMIHQPLGGARGQATDIE----------- 138

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                              +    +         +++++      K    +D   + +  
Sbjct: 139 -------------------IQAKEILRLKAILNDILAKNTKQKLSKIEKDTDRDFFMSAI 179

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 180 EAKEYGLIDKV 190


>gi|29375364|ref|NP_814518.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis V583]
 gi|227517733|ref|ZP_03947782.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis TX0104]
 gi|229546606|ref|ZP_04435331.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis TX1322]
 gi|229548713|ref|ZP_04437438.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis ATCC 29200]
 gi|255971227|ref|ZP_05421813.1| peptidase S14 [Enterococcus faecalis T1]
 gi|255973850|ref|ZP_05424436.1| peptidase S14 [Enterococcus faecalis T2]
 gi|256617656|ref|ZP_05474502.1| peptidase S14 [Enterococcus faecalis ATCC 4200]
 gi|256761537|ref|ZP_05502117.1| peptidase S14 [Enterococcus faecalis T3]
 gi|256957363|ref|ZP_05561534.1| peptidase S14 [Enterococcus faecalis DS5]
 gi|256959901|ref|ZP_05564072.1| peptidase S14 [Enterococcus faecalis Merz96]
 gi|256964395|ref|ZP_05568566.1| peptidase S14 [Enterococcus faecalis HIP11704]
 gi|257083692|ref|ZP_05578053.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis Fly1]
 gi|257086127|ref|ZP_05580488.1| peptidase S14 [Enterococcus faecalis D6]
 gi|257089198|ref|ZP_05583559.1| peptidase S14 [Enterococcus faecalis CH188]
 gi|257415340|ref|ZP_05592334.1| peptidase S14 [Enterococcus faecalis AR01/DG]
 gi|257418377|ref|ZP_05595371.1| peptidase S14 [Enterococcus faecalis T11]
 gi|257421026|ref|ZP_05598016.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis X98]
 gi|293384732|ref|ZP_06630586.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis R712]
 gi|293387456|ref|ZP_06632008.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis S613]
 gi|294781490|ref|ZP_06746829.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis PC1.1]
 gi|300859735|ref|ZP_07105823.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TUSoD Ef11]
 gi|307269823|ref|ZP_07551153.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX4248]
 gi|307272582|ref|ZP_07553835.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0855]
 gi|307276252|ref|ZP_07557380.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX2134]
 gi|307284467|ref|ZP_07564629.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0860]
 gi|307289536|ref|ZP_07569481.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0109]
 gi|307296208|ref|ZP_07576036.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0411]
 gi|312900365|ref|ZP_07759676.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0470]
 gi|312904208|ref|ZP_07763370.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0635]
 gi|312908569|ref|ZP_07767512.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis DAPTO 512]
 gi|312910494|ref|ZP_07769339.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis DAPTO 516]
 gi|312951861|ref|ZP_07770750.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0102]
 gi|60389766|sp|Q837R0|CLPP_ENTFA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|29342824|gb|AAO80588.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis V583]
 gi|227074814|gb|EEI12777.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis TX0104]
 gi|229306150|gb|EEN72146.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis ATCC 29200]
 gi|229308263|gb|EEN74250.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis TX1322]
 gi|255962245|gb|EET94721.1| peptidase S14 [Enterococcus faecalis T1]
 gi|255966722|gb|EET97344.1| peptidase S14 [Enterococcus faecalis T2]
 gi|256597183|gb|EEU16359.1| peptidase S14 [Enterococcus faecalis ATCC 4200]
 gi|256682788|gb|EEU22483.1| peptidase S14 [Enterococcus faecalis T3]
 gi|256947859|gb|EEU64491.1| peptidase S14 [Enterococcus faecalis DS5]
 gi|256950397|gb|EEU67029.1| peptidase S14 [Enterococcus faecalis Merz96]
 gi|256954891|gb|EEU71523.1| peptidase S14 [Enterococcus faecalis HIP11704]
 gi|256991722|gb|EEU79024.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis Fly1]
 gi|256994157|gb|EEU81459.1| peptidase S14 [Enterococcus faecalis D6]
 gi|256998010|gb|EEU84530.1| peptidase S14 [Enterococcus faecalis CH188]
 gi|257157168|gb|EEU87128.1| peptidase S14 [Enterococcus faecalis ARO1/DG]
 gi|257160205|gb|EEU90165.1| peptidase S14 [Enterococcus faecalis T11]
 gi|257162850|gb|EEU92810.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis X98]
 gi|291077982|gb|EFE15346.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis R712]
 gi|291083107|gb|EFE20070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis S613]
 gi|294451420|gb|EFG19883.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis PC1.1]
 gi|295114015|emb|CBL32652.1| ATP-dependent Clp protease proteolytic subunit ClpP [Enterococcus
           sp. 7L76]
 gi|300850553|gb|EFK78302.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TUSoD Ef11]
 gi|306496082|gb|EFM65664.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0411]
 gi|306499497|gb|EFM68869.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0109]
 gi|306503144|gb|EFM72398.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0860]
 gi|306507052|gb|EFM76194.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX2134]
 gi|306510867|gb|EFM79884.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0855]
 gi|306513933|gb|EFM82535.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX4248]
 gi|310625455|gb|EFQ08738.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis DAPTO 512]
 gi|310630159|gb|EFQ13442.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0102]
 gi|310632304|gb|EFQ15587.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0635]
 gi|311289190|gb|EFQ67746.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis DAPTO 516]
 gi|311292553|gb|EFQ71109.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0470]
 gi|315025732|gb|EFT37664.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX2137]
 gi|315029868|gb|EFT41800.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX4000]
 gi|315031465|gb|EFT43397.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0017]
 gi|315036148|gb|EFT48080.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0027]
 gi|315145272|gb|EFT89288.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX2141]
 gi|315148132|gb|EFT92148.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX4244]
 gi|315151531|gb|EFT95547.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0012]
 gi|315153193|gb|EFT97209.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0031]
 gi|315154911|gb|EFT98927.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0043]
 gi|315160005|gb|EFU04022.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0312]
 gi|315161970|gb|EFU05987.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0645]
 gi|315164639|gb|EFU08656.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX1302]
 gi|315166938|gb|EFU10955.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX1341]
 gi|315170665|gb|EFU14682.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX1342]
 gi|315174680|gb|EFU18697.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX1346]
 gi|315573467|gb|EFU85658.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0309B]
 gi|315578035|gb|EFU90226.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0630]
 gi|315581428|gb|EFU93619.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0309A]
 gi|323479964|gb|ADX79403.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis 62]
 gi|327534358|gb|AEA93192.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis OG1RF]
 gi|329577643|gb|EGG59074.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Enterococcus faecalis TX1467]
          Length = 197

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 60/199 (30%), Gaps = 33/199 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D  +  +I ++  +   DS   + + ++SPGGS  AG AIF  +  VK   
Sbjct: 29  IIMLSGPIDDNVANSVIAQLLFLDAQDSEKDIYLYINSPGGSVSAGLAIFDTMNFVKADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +       A   + +     L         ++           
Sbjct: 89  QTIVLGMAASMGSFLLTAGQKGKRFALPNAEIMIHQPLGGAQGQATEIEIAAR------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +  +      +++E    P +            T  
Sbjct: 142 -----------------------HILDTRQRLNSILAERTGQPIEVIERDTDRDNYMTAE 178

Query: 217 EAKKVGLIDVVGGQEEVWQ 235
           +AK+ GLID V        
Sbjct: 179 QAKEYGLIDEVMENSSALN 197


>gi|255565556|ref|XP_002523768.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223536980|gb|EEF38617.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 296

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++ +  + + L+SPGG   AG AI+  +Q +++  
Sbjct: 113 IVCINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPI 172

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++  L + A     +   + +        Y      +      I  V  
Sbjct: 173 NTICLGQAASMASLLLAAGAKGERKSLPNATIMIHQPSGGYSGQAKDMTIHTKQIVRV-- 230

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                       +    +L S+      D      D   + T  
Sbjct: 231 ----------------------------WDSLNQLYSKHTGQSVDVIQKNMDRDYFMTPE 262

Query: 217 EAKKVGLIDVVGG 229
           EAK+ G+ID V  
Sbjct: 263 EAKEFGIIDEVID 275


>gi|194333703|ref|YP_002015563.1| hypothetical protein Paes_0871 [Prosthecochloris aestuarii DSM 271]
 gi|194311521|gb|ACF45916.1| protein of unknown function DUF107 [Prosthecochloris aestuarii DSM
           271]
          Length = 444

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 90/276 (32%), Gaps = 29/276 (10%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERIS 61
           FV+KKI      + ++ L+V       H ++    +  I+++G I   S +  +R   ++
Sbjct: 2   FVIKKISVFIFTVFVLFLSVTVTHKDVHGDNGQSVLYTISLQGSINPGSADFFDRAVSLA 61

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
             DSA A++V L +PGG   +   + + ++++      +        +     + A   +
Sbjct: 62  IADSAHAVLVELDTPGGLVTS---LRQMVRRIMASSVPVIVYVAPRGAQAA-SAGALLTL 117

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
            +   ++     +   +P                               + K+  M Q  
Sbjct: 118 ASHVAAMSPGTEIGAAHPV------------------------GLGGGESEKSGVMSQKA 153

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           V+    +   L  E    P      + +    T  EA + G+IDVV              
Sbjct: 154 VNDLAAFARSLAEERGRSPVWAEKAVRESIASTANEAFEAGVIDVVADDRTTLFKALEGR 213

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
           V Q+  +    +                 L++   P
Sbjct: 214 VVQTADRSVTLSLVSAELRELSPTFQEQVLMKLADP 249


>gi|229018991|ref|ZP_04175833.1| Translocation-enhancing protein tepA [Bacillus cereus AH1273]
 gi|229025236|ref|ZP_04181658.1| Translocation-enhancing protein tepA [Bacillus cereus AH1272]
 gi|228736064|gb|EEL86637.1| Translocation-enhancing protein tepA [Bacillus cereus AH1272]
 gi|228742319|gb|EEL92477.1| Translocation-enhancing protein tepA [Bacillus cereus AH1273]
          Length = 249

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 25/190 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I +I  I ++     L++ L++ GG   AG AI   +  +              +  
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    ++      + +   +     +L   +  V             ++
Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      +   F  L+    N+  D       G    G +A K GLID VGG 
Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224

Query: 231 EEVWQSLYAL 240
               + L  L
Sbjct: 225 GGALRKLNEL 234


>gi|224081363|ref|XP_002306383.1| predicted protein [Populus trichocarpa]
 gi|118481948|gb|ABK92906.1| unknown [Populus trichocarpa]
 gi|222855832|gb|EEE93379.1| predicted protein [Populus trichocarpa]
          Length = 244

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++ +  + + L+SPGG   AG AI+  +Q +++  
Sbjct: 61  IVCINGPINDDTSNVVVAQLLFLESENPSKPIHMYLNSPGGHVTAGLAIYDTMQYIRSPV 120

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++  L S A     A   + +        Y      L      I  V  
Sbjct: 121 NTICLGQAASMASLLLASGAKGERKALPNATIMIHQPSGGYSGQAKDLTIHTKQIVRV-- 178

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                       +    +L  +    P D      D   + T  
Sbjct: 179 ----------------------------WDALNQLYCKHTGKPIDVIQKNMDRDYFMTPE 210

Query: 217 EAKKVGLIDVVGG 229
           EAK+ G+ID V  
Sbjct: 211 EAKEFGIIDEVID 223


>gi|238028274|ref|YP_002912505.1| hypothetical protein bglu_1g27310 [Burkholderia glumae BGR1]
 gi|237877468|gb|ACR29801.1| Hypothetical protein bglu_1g27310 [Burkholderia glumae BGR1]
          Length = 366

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 70/192 (36%), Gaps = 39/192 (20%)

Query: 41  IAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           I I G I     D+++   R++ +    SA +++V+++S GG  +    I+  +++   +
Sbjct: 24  IRIYGDIGFWGTDAEQFAARLDEVGS--SAASIVVAVNSMGGDVFDAFTIYNLLRRYPGK 81

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
                 V  +AASA  L+    + IV    +++            +  L +L        
Sbjct: 82  --TTGRVDGIAASAASLLLMGCSQIVMPSNAMLMIHNPHTLAAGDEGELRRLAD------ 133

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215
                                   ++ S+    +   +E      DK   L D   W T 
Sbjct: 134 ------------------------LLGSTSANMLTAYAERSGQTEDKVRELMDVETWLTA 169

Query: 216 AEAKKVGLIDVV 227
           A+A ++G  D +
Sbjct: 170 AQAVELGFCDAI 181


>gi|256840555|ref|ZP_05546063.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737827|gb|EEU51153.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 459

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 96/263 (36%), Gaps = 27/263 (10%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALI 70
           ++  L  + ++              +  I I+ +I+++  +     +    +  +A A++
Sbjct: 4   LLTILTAIVLILAISLQSEAKEKSLIYTIDIKKEIDNTTWIYLHNGLSEAKQL-NADAIL 62

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + +++ GG   + +++  AI  + +  PV   +   AASAG LIS A   I   + + +G
Sbjct: 63  LHMNTYGGLLESADSMRTAI--LYSPIPVYVFIDNNAASAGALISIACKKIYMRKGANIG 120

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           +  V+ Q     P   +  +      ++  + + +     +                   
Sbjct: 121 AATVVNQTGAALPDKYQSYMRSMIRSTAEAQGKDTLIQNGDTIYKWKRD----------- 169

Query: 191 RLVSESRNIPYDKTLVLSDGR---IWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSI 246
            L++E+          L D       T  EA K G  D +    ++V             
Sbjct: 170 PLIAEAMVDDRVIVPNLIDSGKVLTLTSQEALKWGYCDGIAESPDQVITEYIG----CKD 225

Query: 247 RKIKDWNPPKNYWFCDLKNLSIS 269
            +IK + P    WF ++K   +S
Sbjct: 226 YEIKSYEP---SWFDNVKGFFMS 245


>gi|145640030|ref|ZP_01795627.1| putative Clp-like protease [Haemophilus influenzae PittII]
 gi|145270863|gb|EDK10783.1| putative Clp-like protease [Haemophilus influenzae PittII]
          Length = 680

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 76/254 (29%), Gaps = 42/254 (16%)

Query: 30  HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
            ++  +   A I+I  +I      +    + ++      +   + + + SPGG  + G A
Sbjct: 27  SIKAKANDTAEISIYDEIGFWGVSAASFAQDLKDCGN--NIKQINLHIHSPGGDVFDGIA 84

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I+  ++       V   +  +AAS   +I+ A N ++  E +++                
Sbjct: 85  IYNLLKNHPAN--VTVYIDGLAASMASVIAMAGNEVIMPENAMMMIH------------- 129

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
                    ++    +        ++               +  +   +       ++  
Sbjct: 130 -----KPWGIQGGDAEDMRKYADLLDKVE------------NTLIPAYASKTGKTPEELA 172

Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
            +     W  G E  + G  D +        S+ +  ++      K     K+  F    
Sbjct: 173 EMLSAETWLNGKECVEQGFADKLAEPLVAMASIKSRKLEDFENMPKAM---KDMLFKPQG 229

Query: 265 NLSISSLLEDTIPL 278
           N   S+      P 
Sbjct: 230 NAGASAPQATPTPA 243


>gi|242373003|ref|ZP_04818577.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis M23864:W1]
 gi|242349329|gb|EES40930.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis M23864:W1]
          Length = 195

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 62/192 (32%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  QI+D  +  ++ ++  +   DS   + + ++SPGGS  AG AI+  IQ +K   
Sbjct: 29  IIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + V     L         ++           
Sbjct: 89  QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +  +     R+++E      +K           T  
Sbjct: 142 -----------------------HILKTREKLNRILAERTGQSIEKIQQDTDRDNFLTAE 178

Query: 217 EAKKVGLIDVVG 228
           EAK  GLID V 
Sbjct: 179 EAKSYGLIDEVM 190


>gi|205373589|ref|ZP_03226392.1| TepA [Bacillus coahuilensis m4-4]
          Length = 250

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 25/198 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  I ++     L+V L++ GG   AG AI   +  +   KP ++ V     S 
Sbjct: 73  EHMIPQLVAIEQNPKIEGLLVILNTVGGDVEAGLAIAEMLASL--SKPTVSIVLGGGHSI 130

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
           G  I+ A +    AET+ +    V      +                           ++
Sbjct: 131 GVPIATACDYSFIAETATMTIHPVRLTGLVIGVP-----------------QTFEYMDKM 173

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + V+ +    + S   F  L+    N+  D       G    G +A K GL++ VGG 
Sbjct: 174 QDRVVKFVTGHSNISEEDFKDLMFAKGNLTRDI------GTNVVGDDAVKYGLMNEVGGL 227

Query: 231 EEVWQSLYALGVDQSIRK 248
               + L  L       +
Sbjct: 228 GAAMKKLNELIEQSKTEE 245


>gi|227529566|ref|ZP_03959615.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350525|gb|EEJ40816.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           vaginalis ATCC 49540]
          Length = 197

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 55/191 (28%), Gaps = 31/191 (16%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IED     ++ ++  +   DS   + + ++SPGG   +G AI+  +  +K+  
Sbjct: 29  IIMLSGPIEDDMANSIVAQLLFLDAQDSTKDIYLYINSPGGVVTSGMAIYDTMNFIKSDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++  + S A         S V                            
Sbjct: 89  QTIVIGMAASMASVLVSSGAKGKRFGLPHSQVLIHQPSG--------------------- 127

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                +                     + +    +   +R+   D           T  E
Sbjct: 128 GAQGQQTEIEIAATEILKTRKMINEILAKNSGQPIEKINRDTERD--------HYLTAQE 179

Query: 218 AKKVGLIDVVG 228
           A   GL+D + 
Sbjct: 180 AVDYGLLDGIM 190


>gi|163814155|ref|ZP_02205547.1| hypothetical protein COPEUT_00309 [Coprococcus eutactus ATCC 27759]
 gi|158450604|gb|EDP27599.1| hypothetical protein COPEUT_00309 [Coprococcus eutactus ATCC 27759]
          Length = 237

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 65/228 (28%), Gaps = 37/228 (16%)

Query: 34  NSPHVARIAIRGQI------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
           +  ++    I G+I               ++L+  + +         ++V +++ GG   
Sbjct: 34  DDGYILLCGIYGEIEGHEKLPVGVKSTSYEDLLPAVAQAENCREIKGVLVLINTVGGDVE 93

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
           +G AI      +      +      +       S  ++ IV   T +V  I        V
Sbjct: 94  SGLAISEMFASLSKPVVTLVLGGGHSIGVPLATSGDASFIVPTATMVVHPIRTSTAVLGV 153

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
           K   + +      +    +        +         +   D                  
Sbjct: 154 KQNFEYIEKMQDRIIDFTVVHSDISHDDFKKYMFNTAELTKDV----------------- 196

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
                   G +  G EA + G+I   GG  +  + LY L    +  KI
Sbjct: 197 --------GSVLVGNEAVRAGIITASGGMADALKKLYDLINCINDSKI 236


>gi|291616549|ref|YP_003519291.1| ClpP [Pantoea ananatis LMG 20103]
 gi|291151579|gb|ADD76163.1| ClpP [Pantoea ananatis LMG 20103]
 gi|327392981|dbj|BAK10403.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pantoea
           ananatis AJ13355]
          Length = 218

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  ++ +K   
Sbjct: 53  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMKFIKPDV 112

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +           S V     L  Y      ++           
Sbjct: 113 STICMGQACSMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 166

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++E      ++        R  + +
Sbjct: 167 ------------------------ILKVKQRMNELMAEHTGKSLEEIERDTERDRFLSAS 202

Query: 217 EAKKVGLIDVVGGQEE 232
           EA + GL+D +    +
Sbjct: 203 EAVEYGLVDSILTHRQ 218


>gi|154509334|ref|ZP_02044976.1| hypothetical protein ACTODO_01859 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798968|gb|EDN81388.1| hypothetical protein ACTODO_01859 [Actinomyces odontolyticus ATCC
           17982]
          Length = 216

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 61/198 (30%), Gaps = 33/198 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D     +  ++  ++ +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 43  IIWLGGEVRDENANVICAQLLLLAAEDPDRDIYLYINSPGGSVTAGMAIYDTMQYIKPDV 102

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +     L + A         + V     L                      
Sbjct: 103 VTVGMGMAASMGQFLLTAGAPGKRYITPHTRVLLHQPLGGAGG----------------- 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                        +   +++  D++         + +       ++     D   W T  
Sbjct: 146 -------------SATEIRINADLILGMKKELAAITASRTGKTVEQVEADGDRDHWFTAQ 192

Query: 217 EAKKVGLIDVVGGQEEVW 234
           EA + G +D V    +  
Sbjct: 193 EALEYGFVDRVIDSPQEI 210


>gi|225028438|ref|ZP_03717630.1| hypothetical protein EUBHAL_02712 [Eubacterium hallii DSM 3353]
 gi|224954236|gb|EEG35445.1| hypothetical protein EUBHAL_02712 [Eubacterium hallii DSM 3353]
          Length = 228

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 70/221 (31%), Gaps = 43/221 (19%)

Query: 32  EDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGS 79
                H+  +++ G+IE              + L+  + ++  +     L + +++ GG 
Sbjct: 21  NGTGQHILFLSVIGEIEGHHLSSDRIKTTKYEHLLPLLTQVQDNQEIDGLFLLINTVGGD 80

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
              G A    I  +  +KP ++ V   + S G  +S A++    A T+ +    V     
Sbjct: 81  CSCGLAAAEMIASI--KKPTVSLVIGDSHSIGVPLSVAADRTFIAPTATMILHPVRLNG- 137

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                                    +            +      ++      V++SR  
Sbjct: 138 -------------------------TIIGAPQTFEYFRLIQDRIVTFVEAHTGVAKSRLE 172

Query: 200 PYDKTLVLSD---GRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
                  +     G I  G  A + G+ID VGG  E    L
Sbjct: 173 RMMIRQGMMVKDLGTILVGKMAVEEGIIDEVGGVSEALFWL 213


>gi|290969192|ref|ZP_06560717.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290780698|gb|EFD93301.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 200

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  LI ++  +  +D    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 30  IIFLSGQVEDTMANSLIAQLLFLEAEDPDKDIYLYINSPGGVVTAGMAIYDTMQYIKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++  L +       A   S V     L         ++     I  V  
Sbjct: 90  STICVGSAASMASVLLAAGTKGKRFALPHSQVMIHQPLGGVQGQATDIEIHTREILRV-- 147

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                                             +++     P D            T  
Sbjct: 148 ----------------------------RRELNGILAAHTGQPLDVIEKDTERDNFLTAE 179

Query: 217 EAKKVGLIDVV 227
           +AK  GLID +
Sbjct: 180 DAKHYGLIDEI 190


>gi|227819365|ref|YP_002823336.1| nodulation competitiveness protein nfeD [Sinorhizobium fredii
           NGR234]
 gi|227338364|gb|ACP22583.1| possible nodulation competitiveness protein nfeD [Sinorhizobium
           fredii NGR234]
          Length = 455

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 93/282 (32%), Gaps = 24/282 (8%)

Query: 14  MLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQI--EDSQELIERIERISRDDSATALI 70
           +L+LV   +  F+        +  VA  + + G I    ++ +I  ++R   D     ++
Sbjct: 4   ILTLVLFLLSAFALPISSVSAAERVALVLHVNGAISPATAEYVIRGLQRA-EDRGVALVV 62

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           + + +PGG   +   I RAI          +      AASAG  I  AS++   A  + +
Sbjct: 63  LQMDTPGGLDTSMRDIIRAILDSSVPVASFVAPSGARAASAGTYILYASHVAAMAPGTNL 122

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           G+   +            L       +      +  P     P +    + + D+  +  
Sbjct: 123 GAATPIAIG-------GGLFGGDDESEKEKPADQGKPDVPKPPSSAGEAKLINDAVAYIR 175

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRK 248
                 +RN  + +   + +    +   A +  ++D      E++ +  +   V      
Sbjct: 176 GLAELRNRNADWAE-KAVREAASLSSPAAVREKVVDFTAVSIEDLLKQAHGRTVRIGQTD 234

Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
            +           D   L+   LL D    +         A+
Sbjct: 235 SR----------LDTTGLAAEDLLPDWRTRLLSVITDPNVAL 266


>gi|224475912|ref|YP_002633518.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|254763800|sp|B9DJL4|CLPP_STACT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|222420519|emb|CAL27333.1| putative ATP-dependent Clp protease proteolytic subunit
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 194

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 64/192 (33%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  ++ ++  +   D+   + + ++SPGGS  AG AI+  IQ +K   
Sbjct: 29  IIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + V     L         ++           
Sbjct: 89  QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAT------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216
                                   +  +     ++++E      ++    +D     T  
Sbjct: 142 -----------------------HILKTRAKLNKILAERTGQSIEQIEKDTDRDNFLTAD 178

Query: 217 EAKKVGLIDVVG 228
           EAK+ GLID V 
Sbjct: 179 EAKEYGLIDEVM 190


>gi|153871192|ref|ZP_02000426.1| Peptidase S14, ClpP [Beggiatoa sp. PS]
 gi|152072341|gb|EDN69573.1| Peptidase S14, ClpP [Beggiatoa sp. PS]
          Length = 228

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 64/209 (30%), Gaps = 33/209 (15%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 48  VIFLVGPVEDYTANLVVAQLLFLESENPEKDIHLYINSPGGSVSAGLAIYDTMQFIKPDV 107

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S +     L  +      +D           
Sbjct: 108 STLCIGQAASMGALLLSGGADKKRYCLPHSRIMIHQPLGGFQGQATDIDIHARE------ 161

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                                   +         ++++    P +K    ++   +  AE
Sbjct: 162 ------------------------ILKVRERLNEILAKHSGQPLEKIQKDTERDNFMAAE 197

Query: 218 -AKKVGLIDVVGGQEEVWQSLYALGVDQS 245
            A + GL+D V        +       + 
Sbjct: 198 TAVEYGLVDAVLSTRHALTAAATEEQTKE 226


>gi|296133921|ref|YP_003641168.1| protein of unknown function DUF107 [Thermincola sp. JR]
 gi|296032499|gb|ADG83267.1| protein of unknown function DUF107 [Thermincola potens JR]
          Length = 450

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 95/286 (33%), Gaps = 37/286 (12%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-QELIERIERISRDD 64
           ++ +   V   ++ L +     S  V  +   +  I I+G+IE      +ER    +   
Sbjct: 10  RRFRRIAVYPLIILLGLALNLGSGPVFADQAKIVFIPIKGEIEPGMASFVERSLDKAEQM 69

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
            A  ++  + +PGG   + + I   I     + P +  ++  A SAG LI+ A+  I   
Sbjct: 70  GAKKVVFEIDTPGGLIDSAQRIKTRI--FNAQVPTVAFINGEAKSAGVLIALAAEEIYMT 127

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             + +G+   +   P +                            +      + +     
Sbjct: 128 PGTAIGAAEPVPNNPKI----------------------------LASWRSDLEEAAEAR 159

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVD 243
             +  +      RN+  +      +    T  +A ++G+ D +   +  +   L      
Sbjct: 160 GRNPKIVAGMADRNVVIENIKEKGEILSLTAKKAVELGIADKIVPDKHALLTDLAQKDGV 219

Query: 244 QSIRKIKDWNP---PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
                 +++ P    +  W+     +S   LL   + L+ +    G
Sbjct: 220 --YYTAEEYRPGFGERLAWWIINPFISPILLLIGFVGLVMEAFTLG 263


>gi|167521860|ref|XP_001745268.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776226|gb|EDQ89846.1| predicted protein [Monosiga brevicollis MX1]
          Length = 209

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G ++D+    ++ ++  +  ++    + V ++SPGGS  AG AI+  +Q ++ R 
Sbjct: 24  IVCLMGPVDDAMASTIVAQLLHLESENPDEPVSVYINSPGGSVTAGLAIYDTLQYIRPRI 83

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L + +     A   S +                            
Sbjct: 84  TTVCSGQACSMGSLLLTAGSPGHRYALPNSRIMVHQPSGGARGQ---------------- 127

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            + +  + +         L +      YD+    L   R  +  
Sbjct: 128 --------------ASDIAIHAEEILKLKTTINNLYAHHTGRTYDEIEAALDRDRFMSAQ 173

Query: 217 EAKKVGLIDVV 227
           EAK  GLID +
Sbjct: 174 EAKDFGLIDQI 184


>gi|256854365|ref|ZP_05559729.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis T8]
 gi|256709925|gb|EEU24969.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis T8]
          Length = 196

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 60/198 (30%), Gaps = 33/198 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D  +  +I ++  +   DS   + + ++SPGGS  AG AIF  +  VK   
Sbjct: 29  IIMLSGPIDDNVANSVIAQLLFLDAQDSEKDIYLYINSPGGSVSAGLAIFDTMNFVKADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +       A   + +     L         ++           
Sbjct: 89  QTIVLGMAASMGSFLLTAGQKGKRFALPNAEIMIHQPLGGAQGQATEIEIAAR------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +  +      +++E    P +            T  
Sbjct: 142 -----------------------HILDTRQRLNSILAERTGQPIEVIERDTDRDNYMTAE 178

Query: 217 EAKKVGLIDVVGGQEEVW 234
           +AK+ GLID V       
Sbjct: 179 QAKEYGLIDEVMENSSAL 196


>gi|222528715|ref|YP_002572597.1| ATP-dependent Clp protease proteolytic subunit
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312622971|ref|YP_004024584.1| ATP-dependent clp protease, proteolytic subunit clpp
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|222455562|gb|ACM59824.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312203438|gb|ADQ46765.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 195

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I D     ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 30  IVILSGEITDDIASLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGFAIYDTMQYIKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   S +     L                      
Sbjct: 90  STICVGLAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGVRGQ---------------- 133

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            +++  + +    +   +++SE    P +     +D   + T  
Sbjct: 134 --------------ATDIKIHAEWILKIKNRINKILSERTGQPIEVIERDTDRDFFMTAE 179

Query: 217 EAKKVGLIDVV 227
           EA K G+ID V
Sbjct: 180 EALKYGIIDKV 190


>gi|239917500|ref|YP_002957058.1| ATP-dependent Clp protease proteolytic subunit ClpP [Micrococcus
           luteus NCTC 2665]
 gi|281414010|ref|ZP_06245752.1| ATP-dependent Clp protease proteolytic subunit ClpP [Micrococcus
           luteus NCTC 2665]
 gi|289705667|ref|ZP_06502052.1| Clp protease [Micrococcus luteus SK58]
 gi|239838707|gb|ACS30504.1| ATP-dependent Clp protease proteolytic subunit ClpP [Micrococcus
           luteus NCTC 2665]
 gi|289557615|gb|EFD50921.1| Clp protease [Micrococcus luteus SK58]
          Length = 221

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 61/181 (33%), Gaps = 30/181 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   DS   + + ++SPGGS  A  AI+  +Q ++     +      +
Sbjct: 59  ASADDVMAQLLVLEAMDSERDITLYINSPGGSFTAMTAIYDTMQFIRPEVQTVCLGQAAS 118

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L + A    +A   + V       Q                              
Sbjct: 119 AAAVLLAAGAPGKRLALPNARVLIHQPAMQGDRG-------------------------- 152

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226
                  +++    ++    W    ++   N   ++    +   +  +  +A + GL+D 
Sbjct: 153 ---TATDLEIHAQEINRMRVWMEETLASLTNRTPEEVSQDIDRDKFLSAEQALEYGLVDE 209

Query: 227 V 227
           V
Sbjct: 210 V 210


>gi|229828941|ref|ZP_04455010.1| hypothetical protein GCWU000342_01026 [Shuttleworthia satelles DSM
           14600]
 gi|229792104|gb|EEP28218.1| hypothetical protein GCWU000342_01026 [Shuttleworthia satelles DSM
           14600]
          Length = 224

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 80/253 (31%), Gaps = 58/253 (22%)

Query: 34  NSPHVARIAIRGQIEDSQE----------------LIERIERISRDDSATALIVSLSSPG 77
               VA+I I+G I   +E                ++ ++E  S +     + + ++S G
Sbjct: 6   KEEKVAKIEIKGAIVPDEEAWIYEYFGEKCTSPSAVLRQLEEASGEK----VDIDINSAG 61

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G+ +A   I+ AIQ    +  V   V  +AASA  +I+CA    +     ++        
Sbjct: 62  GNVFAASEIYAAIQ--GYKGDVKIHVVGLAASAASMIACAGKSDITRTAQMMVH------ 113

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
                        ++ +  +   +        +                      V++S 
Sbjct: 114 -------------NVSAYTAGDYRDMNHASEVLKQANR-----------AIAEAYVAKS- 148

Query: 198 NIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQE----EVWQSLYALGVDQSIRKIKDW 252
            +     L L D   W T  +A   GLID + G+     E    + + G       I+  
Sbjct: 149 GMSEKDALDLMDAETWITAQDAVDYGLIDEIAGESSKEIEPVALVASGGELIQASVIRKM 208

Query: 253 NPPKNYWFCDLKN 265
              K         
Sbjct: 209 QERKENLLAYFAK 221


>gi|320540337|ref|ZP_08039989.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Serratia symbiotica str. Tucson]
 gi|320029657|gb|EFW11684.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Serratia symbiotica str. Tucson]
          Length = 207

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  +     + + ++SPGG   AG +I+  ++ +K   
Sbjct: 42  IIFLTGQVEDHMANLIVAQMLFLEAESPEKDIFLYINSPGGVITAGMSIYDTMKFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A +       S V     L  Y      ++           
Sbjct: 102 STICMGQACSMGSFLLTAGAKSKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++E       +        R  T  
Sbjct: 156 ------------------------ILKVKARMNELMAEHTGQSLAQIECDTERDRFMTAD 191

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 192 EAVEYGLVDGILT 204


>gi|311107958|ref|YP_003980811.1| NfeD-like family protein 2 [Achromobacter xylosoxidans A8]
 gi|310762647|gb|ADP18096.1| NfeD-like family protein 2 [Achromobacter xylosoxidans A8]
          Length = 481

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 75/209 (35%), Gaps = 11/209 (5%)

Query: 38  VARI-AIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           VA + ++ G +    +  +I  +E   +  +A A+++ + +PGG   +   I RAI    
Sbjct: 46  VAVVLSLDGIVGPATADYVIRGLEAARQ-QNAAAVVLRIDTPGGLDASMRDIIRAILASP 104

Query: 95  -NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
                 +      AASAG  I  AS++   A  + +G+   +          D       
Sbjct: 105 VPVISYVAPNGARAASAGTYILYASHVAAMAPATNLGAATPIALGGSPSRPADSPSGPAD 164

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
                P   + +P +  +    + + D V              RN  + +   +      
Sbjct: 165 PADKKPPADKTAPAAPKDAGEAKAINDAVAYIRSLAALR---GRNADWAE-QAVRAAASL 220

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           T  EA+   +ID++   ++V   L     
Sbjct: 221 TAGEARAQNVIDLIA--DDVPDLLAKADG 247


>gi|329296782|ref|ZP_08254118.1| ClpP [Plautia stali symbiont]
          Length = 207

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  ++ +K   
Sbjct: 42  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMKFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +           S V     L  Y      ++           
Sbjct: 102 STICMGQACSMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++E      ++        R  + +
Sbjct: 156 ------------------------ILKVKQRMNELMAEHTGKSLEQIERDTERDRFLSAS 191

Query: 217 EAKKVGLIDVVGGQEE 232
           EA + GL+D +    +
Sbjct: 192 EAVEYGLVDSILTHRQ 207


>gi|296273946|ref|YP_003656577.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098120|gb|ADG94070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arcobacter
           nitrofigilis DSM 7299]
          Length = 194

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  ++ ++  +  +D    + + ++SPGG   +G +I+  +  +K   
Sbjct: 29  IIMLSGEINDPVASTIVAQLLFLEAEDPDKDIYLYINSPGGVITSGMSIYDTMNYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S       +   S V                            
Sbjct: 89  CTICIGQAASMGAFLLSSGVKGKRYSLPNSRVMIHQPSGGAQGQST-------------- 134

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            +Q+    +        ++++E    P       +D   + +  
Sbjct: 135 ----------------DIQIQAKEIQRMKDTLNKMIAEQTGQPIKVIEKDTDRDNFMSAE 178

Query: 217 EAKKVGLIDVVGG 229
           EA K GLID V  
Sbjct: 179 EACKYGLIDEVIT 191


>gi|187935559|ref|YP_001887076.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum B str. Eklund 17B]
 gi|226706444|sp|B2TPB9|CLPP_CLOBB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|187723712|gb|ACD24933.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum B str. Eklund 17B]
          Length = 199

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 67/196 (34%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D     ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IIMLSGEVNDDSSNLIVSQLLFLESEDPDKDISIYINSPGGSITAGMAIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S A+    A   + +     L  +      +      I  +K 
Sbjct: 89  STICVGMAASMGAFLLSSGANGKRYALPNAEIMIHQPLGGFQGQATDIQIHANRILKIKE 148

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
           S  K                                SE+ N P +     +      T  
Sbjct: 149 SLNKIL------------------------------SENTNQPLEVIEADVERDNFMTAD 178

Query: 217 EAKKVGLIDVVGGQEE 232
           EAK  GL+D V  + E
Sbjct: 179 EAKTYGLVDKVITKNE 194


>gi|304390288|ref|ZP_07372241.1| protease subunit of ATP-dependent Clp protease family protein
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304326044|gb|EFL93289.1| protease subunit of ATP-dependent Clp protease family protein
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 290

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 64/210 (30%), Gaps = 37/210 (17%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSA 80
            +     + ++  V  + I G I +      ++   I     +  +  + + L+SPGG  
Sbjct: 8   LTPEPSTDPDADAVRVLRISGTIAEESWFDDDITPSIFASELNAGSGPVTIWLNSPGGDV 67

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
            A   I+  +    +   V   +  +AASA  +I+ A++ +  +  S++           
Sbjct: 68  VAAAQIYNMLIDYPS--HVTVNIDGIAASAASVIAMAASTVAMSPVSMLMIHNPATMAVG 125

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
            K  L +    + SV                                  +    E   + 
Sbjct: 126 DKDELARAMSMLDSV------------------------------KESILNAYQEKTGMS 155

Query: 201 YDKTLVLSDGRIWT-GAEAKKVGLIDVVGG 229
             K   L D   W     A  +G  D +  
Sbjct: 156 RAKLSKLMDAETWMDARAAIDMGFADELLT 185


>gi|224824117|ref|ZP_03697225.1| protein of unknown function DUF107 [Lutiella nitroferrum 2002]
 gi|224603536|gb|EEG09711.1| protein of unknown function DUF107 [Lutiella nitroferrum 2002]
          Length = 459

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 65/234 (27%), Gaps = 12/234 (5%)

Query: 14  MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIV 71
           +  ++ + +      +      P V  I + G I    +  +   + R  + + A  +++
Sbjct: 4   LWHIIMIWLGLLLGGATAATPQPPVMLIPLTGAIGPVGADHVTRSLARAEK-EGAQLVVL 62

Query: 72  SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
            + +PGG   +   I +AI                 A++       ++ I A        
Sbjct: 63  QMDTPGGLDTSMRQIIKAILASPVPVASFVAPSGARAASAGTYILYASHIAAMAPGTNVG 122

Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
                Q        ++                     E        +     +    ++R
Sbjct: 123 AATPIQIGITGAQPEQPSAR------GGKSGSSDAALEQGGSTQDTLTHKQINDAAAYIR 176

Query: 192 LVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            +++ R          + +    +  EA    +ID      +V   L  L   +
Sbjct: 177 GLAQLRGRDVAWGEQAVREAVSLSADEALARNVID--LTARDVPDLLVKLQGRK 228


>gi|256848088|ref|ZP_05553532.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715148|gb|EEU30125.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 197

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 59/192 (30%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IED     ++ ++  +   DS   + + ++SPGG   +G AI+  +  +K   
Sbjct: 29  IIMLSGPIEDDMANSIVAQLLFLDAQDSTKDIYLYINSPGGVVTSGMAIYDTMNFIKADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++  + S A         S V            +  ++           
Sbjct: 89  QTIVIGMAASMASVLVSSGAKGKRFGLPHSQVLIHQPSGGAQGQQTEIEIAATE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +  +      +++E+   P +K           T  
Sbjct: 143 ------------------------ILKTRKMINEILAENSGQPIEKINQDTERDHYLTAQ 178

Query: 217 EAKKVGLIDVVG 228
           EA   GL+D + 
Sbjct: 179 EAVDYGLLDGIM 190


>gi|284161288|ref|YP_003399911.1| hypothetical protein Arcpr_0167 [Archaeoglobus profundus DSM 5631]
 gi|284011285|gb|ADB57238.1| protein of unknown function DUF107 [Archaeoglobus profundus DSM
           5631]
          Length = 416

 Score = 47.3 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 52/235 (22%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-EDSQELIERIERISRDDSAT 67
           KT  V+L  +                   +  I I+G+I + + EL+ +   ++  ++A 
Sbjct: 3   KTLLVILIFIFAI----------PQAKALIVEIDIKGEINQGTVELVRQGFDLAMRENAQ 52

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           A+++ L +PGG   + + I   I                +ASAG +I  + +I   A  +
Sbjct: 53  AVLIVLDTPGGLLSSTKEIVSTIMNSGIPVITYVPKGAFSASAGTIILLSGHISAMANGT 112

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187
            +GS   +                                  ++ +      + V S   
Sbjct: 113 SLGSATPVG---------------------------------LSEEEKNKTINYVASYLE 139

Query: 188 WFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
                ++E+R  P +     +++G   T  EA + G+ID++    E    L+   
Sbjct: 140 S----IAEARGRPKEIVKKFVTEGISLTAREAYEKGVIDILADSRE---ELFEKA 187


>gi|307544936|ref|YP_003897415.1| ATP-dependent Clp protease proteolytic subunit [Halomonas elongata
           DSM 2581]
 gi|307216960|emb|CBV42230.1| ATP-dependent Clp protease proteolytic subunit [Halomonas elongata
           DSM 2581]
          Length = 206

 Score = 47.3 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     L+ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 39  VIFLVGPVEDYTANLLVAQLLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 98

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S +     L  Y      ++     I  +  
Sbjct: 99  STVCIGQAASMGALLLAGGAHGKRYCLPNSRMMIHQPLGGYQGQASDIEIHTREILGI-- 156

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                             + +  ++          +++                   GA+
Sbjct: 157 -----------------RERLNQILAHHTGQKFETIAK----------DTDRDNFMNGAQ 189

Query: 218 AKKVGLIDVVGG 229
           A + GLID V  
Sbjct: 190 AAEYGLIDAVLD 201


>gi|302817596|ref|XP_002990473.1| hypothetical protein SELMODRAFT_131898 [Selaginella moellendorffii]
 gi|300141641|gb|EFJ08350.1| hypothetical protein SELMODRAFT_131898 [Selaginella moellendorffii]
          Length = 253

 Score = 47.3 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++    + + ++SPGG   AG AI+  +Q +++  
Sbjct: 55  IVCIHGPIADDTASLVVAQLLYLESENPLKPIHLYINSPGGVVTAGLAIYDTMQYIRSPV 114

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +       A++   +  A+       +     + V             + +  + +  
Sbjct: 115 STLCVG---QAASMGSLLLAAGEPGQRRSLPNARVMVHQPSGGASGQASDIAIQAREI-- 169

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                                            +L ++      +K    +      +  
Sbjct: 170 -------------------------LDMRSRLNKLYAKHTGSSIEKIDQSMERDHFMSPE 204

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 205 EAKEFGLIDEV 215


>gi|77465659|ref|YP_355162.1| periplasmic serine protease (ClpP class) [Rhodobacter sphaeroides
           2.4.1]
 gi|77390077|gb|ABA81261.1| Periplasmic serine proteases (ClpP class) [Rhodobacter sphaeroides
           2.4.1]
          Length = 305

 Score = 47.3 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 80/223 (35%), Gaps = 24/223 (10%)

Query: 39  ARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           A + +RG +  +               L E +  ++  + A A+++ + SPGG     EA
Sbjct: 61  AVVPVRGILTPNMAQYERWFGWATYHGLAETMAHLAASEDAAAIVLEIDSPGGLVCGIEA 120

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
              AI      KPV   V  +AASA Y ++  ++ IV    ++ GSIGV          +
Sbjct: 121 AAEAIAAAAAVKPVHALVSPLAASAAYWLASQASEIVMTPGAVAGSIGV---ALTAAAHV 177

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204
                  +  + S   A               +Q  +D +   F   VS  R IP  +  
Sbjct: 178 QPGANGAQIFEMSSRHARAKRPDASTEAGRAELQRSLDEAEAAFHAAVSAGRAIPAAELA 237

Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                       G  +   EA + GL D +  +   +  L A 
Sbjct: 238 ARLSVTDDPQDGGATFRAPEAIRRGLADRIETRAAFYARLAAR 280


>gi|295395010|ref|ZP_06805222.1| ATP-dependent Clp protease proteolytic subunit [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972169|gb|EFG48032.1| ATP-dependent Clp protease proteolytic subunit [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 215

 Score = 47.3 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 61/184 (33%), Gaps = 27/184 (14%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    + + ++SPGGS  A  AI+  +Q +K     +      +
Sbjct: 55  TSADDVMAQLLVLESQDPDRDITLYINSPGGSFTALTAIYDTMQYIKPEIQTVCLGQAAS 114

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L + A    +A   + V       Q        D    + + ++           
Sbjct: 115 AAAVLLAAGAPGKRLALPNARVLIHQPAMQGQGQGQASDLEIQANEVLRM---------- 164

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
                   + +++ +    +     VS            +      T  EAK  GL+D V
Sbjct: 165 -------RRWLEETLAKHSNKSADEVS----------NDIERDLFLTAEEAKNYGLVDQV 207

Query: 228 GGQE 231
               
Sbjct: 208 LSSR 211


>gi|269102625|ref|ZP_06155322.1| ATP-dependent protease [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162523|gb|EEZ41019.1| ATP-dependent protease [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 658

 Score = 47.3 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 67/218 (30%), Gaps = 41/218 (18%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ----ELIERIERISRDDSATALIVSLSSPGGSAY 81
           SW +          ++ I G I   +    +LI+ ++ I   D    +   + S GGS Y
Sbjct: 7   SWFTLTNQGDDQPVKVWIHGDIGSYEIAAIDLIKALQSIGSQD----VHFRIQSYGGSVY 62

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
            G A++ AI+    +   +  V  + AS       A + +   E + +            
Sbjct: 63  EGLAMYNAIKAH--KGKTVGIVDGLVASISSYFLMACDEVHMPENAKLMIHDPAIGAWGG 120

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
           +  L+                                   + ++         E      
Sbjct: 121 EDELESALTQ------------------------------LKNAKQTIAEAYVERSGQSL 150

Query: 202 DKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
           D     ++    +T ++A + GLID V    ++   L 
Sbjct: 151 DDVLEAMAKETWFTASQALEFGLIDQVIDAVDLSNCLK 188


>gi|254507754|ref|ZP_05119885.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus 16]
 gi|219549279|gb|EED26273.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus 16]
          Length = 208

 Score = 47.3 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L  +      +      I ++K 
Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQ 161

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                              L++E    P +               
Sbjct: 162 KLNK------------------------------LLAEHTGQPLEVIERDTDRDNFMAAE 191

Query: 217 EAKKVGLIDVV 227
           +A + GL+D V
Sbjct: 192 QAVEYGLVDAV 202


>gi|65321281|ref|ZP_00394240.1| COG0740: Protease subunit of ATP-dependent Clp proteases [Bacillus
           anthracis str. A2012]
 gi|167633728|ref|ZP_02392052.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0442]
 gi|170688767|ref|ZP_02879971.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0465]
 gi|170705747|ref|ZP_02896210.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0389]
 gi|177654334|ref|ZP_02936263.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0174]
 gi|190566076|ref|ZP_03018995.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis Tsiankovskii-I]
 gi|227813139|ref|YP_002813148.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. CDC 684]
 gi|229601615|ref|YP_002868186.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0248]
 gi|167531134|gb|EDR93821.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0442]
 gi|170129287|gb|EDS98151.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0389]
 gi|170667283|gb|EDT18042.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0465]
 gi|172080824|gb|EDT65905.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0174]
 gi|190562995|gb|EDV16961.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis Tsiankovskii-I]
 gi|227002833|gb|ACP12576.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. CDC 684]
 gi|229266023|gb|ACQ47660.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0248]
          Length = 240

 Score = 47.3 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 79/256 (30%), Gaps = 50/256 (19%)

Query: 31  VEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSA 80
               +   A + I G+I            S      ++ +  D     + + ++SPGGS 
Sbjct: 2   KASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDD--IKTINLYINSPGGSV 59

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           +   AI   +Q+   +  +I+ +  + AS   ++   S+ I+    S++        + Y
Sbjct: 60  FETMAIIAMLQRHHAK--IISYIDGIGASCASVLPMISDKIIMYANSMMMIHN---AWTY 114

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
                D+L  +   ++                           +       L      + 
Sbjct: 115 ASGNADQLRKAADDIE-------------------------RINQSMVQHYLTRAGDKLD 149

Query: 201 YDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
            D    L D   W +  EA   GL D +         L         + +K++       
Sbjct: 150 EDTLKQLLDAETWLSAEEAMGYGLCDEIIPANNATACL-------DEKWMKEYKNIPQQL 202

Query: 260 FCDLKNLSISSLLEDT 275
                N+S + +LE  
Sbjct: 203 VNAQANISSNEMLERQ 218


>gi|289621889|emb|CBI51800.1| putative ATP-dependent Clp protease, proteolytic subunit [Sordaria
           macrospora]
          Length = 225

 Score = 47.3 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 67/209 (32%), Gaps = 46/209 (22%)

Query: 41  IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
           + + G I+D  S  ++ ++  +  D+    + + ++SPGG   +G AI+  +  +K+   
Sbjct: 57  LCLNGAIDDTTSAAIVAQLLWLESDNPDKPITMYINSPGGEVSSGLAIYDTMTYIKSPVS 116

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            +      + +A  LI        A   S V    +          ++K+  S  +    
Sbjct: 117 TVCVGAAASMAAVLLIGGEPGKRYALPHSTVMIQRIR-------EQINKIVQSHINKSFG 169

Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEA 218
             K + +  S++  +                                        T  EA
Sbjct: 170 YEKYDLAAISDMMERDKY------------------------------------LTAEEA 193

Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            ++G++D +  +  V         D    
Sbjct: 194 VELGVVDQILDRR-VKDEAEKKAKDGETP 221


>gi|212224206|ref|YP_002307442.1| nodulation protein nfeD [Thermococcus onnurineus NA1]
 gi|212009163|gb|ACJ16545.1| nodulation protein nfeD [Thermococcus onnurineus NA1]
          Length = 441

 Score = 47.3 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 5/119 (4%)

Query: 11  RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATA 68
           +  ++ +V +  V F  S+H +     V    I G I      +    I    +  +A+A
Sbjct: 2   KLKIVLIVLILFVTFFPSAHAQ--GNTVYVAKIDGMITGYTVDQFDRYISEAEK-ANASA 58

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +I+ L++PGG A A + I   IQ  K    +        A++        + ++A    
Sbjct: 59  IIIELNTPGGRADAMQEIVMRIQNAKVPVIIYVYPSGGMAASAGTYIALGSHLIAMAPG 117


>gi|86147046|ref|ZP_01065363.1| hypothetical membrane protein [Vibrio sp. MED222]
 gi|85835111|gb|EAQ53252.1| hypothetical membrane protein [Vibrio sp. MED222]
          Length = 468

 Score = 47.3 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 81/249 (32%), Gaps = 24/249 (9%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIE 58
           M F+LK +    ++              S V   +  V  I + G I    S  L   IE
Sbjct: 1   MTFILKYLFAFLLLF-------------SSVFAQADDVWVIEVNGGIGPATSDYLTREIE 47

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCA 117
           +   D+ A  +I+ +++PGG   +   I R+I          +      AASAG  I  A
Sbjct: 48  QA-HDEQAKLIILKMNTPGGLDSSMRDIIRSITTSPIPIATWVGPAGSRAASAGTYILLA 106

Query: 118 SNIIVAAETSLVGSIGVL----FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           S+I   A  + +G+   +     + P              +  +          S+    
Sbjct: 107 SHIASMAPGTNLGAATPVSLGGGKAPASPLSPQDDANKDDNTSAGEQDETKQENSDQVKA 166

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
              M + V++ +  + V L              + +        A  + +ID +      
Sbjct: 167 TTAMEKKVINDAAAYIVSLAKLHNRNEEWAEKAVREAASLDSENALTLNVIDSIASD--- 223

Query: 234 WQSLYALGV 242
            Q L  L  
Sbjct: 224 LQQLVELSN 232


>gi|294083692|ref|YP_003550449.1| protease subunit of ATP-dependent Clp protease [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663264|gb|ADE38365.1| Protease subunit of ATP-dependent Clp protease [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 216

 Score = 47.3 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G ++D+    +  ++  +  ++    + + ++SPGG   +G AI+  ++ ++   
Sbjct: 43  IIFLNGPVDDTTASLVCSQLLFLESENPTKDISMYINSPGGIVTSGLAIYDTMEYIRPDV 102

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L++ A+    +   + + +      +      ++           
Sbjct: 103 STVCMGQAASMGSLLLMAGAAGKRYSLPNARIMTHQPSGGFSGQASDIEIHARE------ 156

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +         +  +           + +   + T  
Sbjct: 157 ------------------------ILDLRKRLNGMYVKHTGKTLKDVEKIMERDTFMTAE 192

Query: 217 EAKKVGLIDVV 227
           +A+K GLID V
Sbjct: 193 DAQKFGLIDEV 203


>gi|309811146|ref|ZP_07704942.1| endopeptidase Clp [Dermacoccus sp. Ellin185]
 gi|308434876|gb|EFP58712.1| endopeptidase Clp [Dermacoccus sp. Ellin185]
          Length = 221

 Score = 47.3 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 61/187 (32%), Gaps = 30/187 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + ++I ++  +   D    +++ ++SPGGS  A  AI+  +Q ++            +
Sbjct: 60  ASADDIIAQLIVLESQDPDRDIVMYINSPGGSFTALTAIYDTMQYIRPDVHTFVLGQAAS 119

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L + A     A   + V       +    +    ++  +                
Sbjct: 120 AAAVLLGAGAPGKRYALPNARVLIHQPAMEGSGGQASDVEIQAN---------------- 163

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226
                         +     W    +++      ++    +   +I T   AK+ GLID 
Sbjct: 164 -------------EIMRMREWLEETLAKHSGRSIEQVRADIDRDKILTAEMAKEYGLIDE 210

Query: 227 VGGQEEV 233
           V    + 
Sbjct: 211 VLTSRKA 217


>gi|108757731|ref|YP_634562.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus xanthus
           DK 1622]
 gi|3023519|sp|O30612|CLPP2_MYXXD RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|2384690|gb|AAB97819.1| proteosome major subunit [Myxococcus xanthus DK 1622]
 gi|108461611|gb|ABF86796.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Myxococcus
           xanthus DK 1622]
          Length = 203

 Score = 47.3 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 62/184 (33%), Gaps = 31/184 (16%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q VK     I      +  A  
Sbjct: 43  IVAQLLFLESEDPDKGINLYINSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGALL 102

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L++ A     A   S +     L         +D                          
Sbjct: 103 LLAGAKGKRYALPNSRIMIHQPLGGAQGQATDID-------------------------- 136

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQE 231
               +    +     +   L+ +      ++    ++   + +  +A++ GLID V  ++
Sbjct: 137 ----IQAKEILRLRSYINGLIVKHTGHTIERIEKDTERDYFMSAEDARQYGLIDEVVEKQ 192

Query: 232 EVWQ 235
            V  
Sbjct: 193 RVIA 196


>gi|218289882|ref|ZP_03494072.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius LAA1]
 gi|258511244|ref|YP_003184678.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|218240022|gb|EED07208.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius LAA1]
 gi|257477970|gb|ACV58289.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 192

 Score = 47.3 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 65/194 (33%), Gaps = 33/194 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D     ++ ++  ++ DD    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IIFLGTPIDDDVANAVVAQLLFLAADDPDKDIQMYINSPGGSVSAGLAIYDTMQHIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      + +A  L + A     A   S V     L         ++           
Sbjct: 89  STMCVGMAASMAAVLLAAGAKGKRYALPNSEVMIHQPLGGARGQASDIE----------- 137

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                              +    +  +     R+++E    P ++           +  
Sbjct: 138 -------------------IHARHILKTRERLNRILAERTGQPLERVAQDTDRDNFMSAE 178

Query: 217 EAKKVGLIDVVGGQ 230
           EAK  GLID V  +
Sbjct: 179 EAKAYGLIDEVIYR 192


>gi|15966977|ref|NP_387330.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           meliloti 1021]
 gi|307302445|ref|ZP_07582202.1| Endopeptidase Clp [Sinorhizobium meliloti BL225C]
 gi|307316225|ref|ZP_07595669.1| Endopeptidase Clp [Sinorhizobium meliloti AK83]
 gi|18202305|sp|P58277|CLPP1_RHIME RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|15076250|emb|CAC47803.1| Probable ATP-dependent CLP protease proteolytic subunit
           [Sinorhizobium meliloti 1021]
 gi|306898065|gb|EFN28807.1| Endopeptidase Clp [Sinorhizobium meliloti AK83]
 gi|306903115|gb|EFN33705.1| Endopeptidase Clp [Sinorhizobium meliloti BL225C]
          Length = 205

 Score = 47.3 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 61/201 (30%), Gaps = 35/201 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D+    +  ++  +  +     + + ++SPGG   +G A++  ++ ++   
Sbjct: 33  IIFLNGEVNDAVSALVCAQLLFLEAESPKKPIQLYINSPGGVVTSGFAMYDTMRYIRAPV 92

Query: 98  PVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
             +         S   +   A         S++               L       ++  
Sbjct: 93  HTLCMGTARSMGSFLLMAGEAGERTALPNASILVHQPSGGFQGQASDMLIHAEEIRRT-- 150

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTG 215
                                         H   RL +E     Y++    +   R  T 
Sbjct: 151 -----------------------------KHRMTRLYAEHCGRTYEEFERAMDRDRFMTA 181

Query: 216 AEAKKVGLIDVVGGQEEVWQS 236
            EA + GLID +  + E+   
Sbjct: 182 EEALEWGLIDRIITEREIGAE 202


>gi|303229413|ref|ZP_07316203.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           atypica ACS-134-V-Col7a]
 gi|303231336|ref|ZP_07318070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302513932|gb|EFL55940.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302515949|gb|EFL57901.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 197

 Score = 47.3 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 59/195 (30%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D  +  +I ++  +  +D    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 28  IIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMQYIKPDV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   + V     L         ++           
Sbjct: 88  STICVGSAASMGAVLLTAGAKGKRFALPHARVMIHQPLGGVQGQASEIEIHARE------ 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +         +++       +            +  
Sbjct: 142 ------------------------ILRMREELNGILAARSGQDIEVVARDTDRDNFMSAQ 177

Query: 217 EAKKVGLIDVVGGQE 231
           +A + GLID V  ++
Sbjct: 178 DAVEYGLIDEVLTRD 192


>gi|317047175|ref|YP_004114823.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea sp.
           At-9b]
 gi|316948792|gb|ADU68267.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea sp.
           At-9b]
          Length = 207

 Score = 47.3 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  ++ +K   
Sbjct: 42  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMKFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +           S V     L  Y      ++           
Sbjct: 102 STICMGQACSMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++E      ++        R  + +
Sbjct: 156 ------------------------ILKVKQRMNELMAEHTGKSLEQIERDTERDRFLSAS 191

Query: 217 EAKKVGLIDVVGGQEE 232
           EA + GL+D +    +
Sbjct: 192 EAVEYGLVDSILTHRQ 207


>gi|160897495|ref|YP_001563077.1| ATP-dependent Clp protease proteolytic subunit [Delftia acidovorans
           SPH-1]
 gi|160363079|gb|ABX34692.1| Endopeptidase Clp [Delftia acidovorans SPH-1]
          Length = 201

 Score = 47.3 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 64/197 (32%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D+    +  ++  +  ++    + + ++SPGG   +G A++  +Q +K+  
Sbjct: 33  VIFLNGEVNDAVSALVCAQLLFLEAENPDKPIHLYINSPGGVITSGLAMYDTMQFIKSPV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +                     +    S+   + +  + P  +  L    + +     
Sbjct: 93  HTLC--------------------MGTARSMGSFLLMAGE-PGHRMALPNASLHVHQPLG 131

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                      +     RL ++     Y++    L   R  T  
Sbjct: 132 GVQGQASDIRIHAEEMLR---------TKDRVTRLYAQHCGRSYEEVERDLDRDRFMTAE 182

Query: 217 EAKKVGLIDVVGGQEEV 233
           EA++ GLID V  +   
Sbjct: 183 EAREWGLIDKVLDRRTA 199


>gi|150398272|ref|YP_001328739.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           medicae WSM419]
 gi|150029787|gb|ABR61904.1| Endopeptidase Clp [Sinorhizobium medicae WSM419]
          Length = 205

 Score = 47.3 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 60/201 (29%), Gaps = 35/201 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D+    +  ++  +  +     + + ++SPGG   +G A++  ++ ++   
Sbjct: 33  IIFLNGEVNDAVSALVCAQLLFLEAESPTKPIQLYINSPGGVVTSGFAMYDTMRYIRAPV 92

Query: 98  PVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
             +         S   +   A        TS++               L       ++  
Sbjct: 93  HTLCMGTARSMGSFLLMAGEAGGRAALPNTSILVHQPSGGFQGQASDMLIHAEEIRRT-- 150

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTG 215
                                         H   RL +E     Y++    +   R  T 
Sbjct: 151 -----------------------------KHRMTRLYAEHCGRTYEEFERAMDRDRFMTA 181

Query: 216 AEAKKVGLIDVVGGQEEVWQS 236
            EA + GLID +  +      
Sbjct: 182 EEALEWGLIDCILTERVAGAE 202


>gi|330508860|ref|YP_004385288.1| nodulation protein NfeD [Methanosaeta concilii GP-6]
 gi|328929668|gb|AEB69470.1| nodulation protein NfeD [Methanosaeta concilii GP-6]
          Length = 438

 Score = 47.3 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 77/214 (35%), Gaps = 10/214 (4%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIE 58
           M   ++ + +R + + L+   V+           +  V  + ++G I  + +  ++  +E
Sbjct: 6   MNSRVRVMLSRILEIVLLLALVLG------QAQAAGTVLTVDMKGTITPASDDIVLAALE 59

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCA 117
           R   +D A AL++ L +PGG       I R I +               A SAG +I   
Sbjct: 60  RAEAED-ARALMLLLDTPGGGLAETTEILRLIDESDIPVIGYVHPEGAAAWSAGTIILIG 118

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           S+I   A  +++GS   +   P           +  ++ +   +               +
Sbjct: 119 SDIAAMAPHTIIGSAQPVQFSPTGSTVPVNDSKTTNAIVAMIEEKARKHGRNTTAAREFV 178

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
           + ++  ++       V E      ++ L   +G 
Sbjct: 179 LSNLNLNADEAMKYRVVEHIAPTPEELLAQINGT 212


>gi|294790932|ref|ZP_06756090.1| Clp protease [Scardovia inopinata F0304]
 gi|294458829|gb|EFG27182.1| Clp protease [Scardovia inopinata F0304]
          Length = 216

 Score = 47.3 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 60/181 (33%), Gaps = 30/181 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    +++ ++SPGGS  A  AI+  +Q +K     +      +
Sbjct: 60  ASADDIMAQLLVLESQDPDRDVVLYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 119

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L +      +    + V          + K                         
Sbjct: 120 AAAILLAAGTKGKRLMLPNARVLIHQPAMGQDFGKA------------------------ 155

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226
                  +++    +     W    +++      ++    +    I T  +AK+ G++D 
Sbjct: 156 -----TEIEIQAKELLRMREWLENTLAKHTGQDVERIRKDIETDTILTAEQAKEYGMVDA 210

Query: 227 V 227
           +
Sbjct: 211 I 211


>gi|315501699|ref|YP_004080586.1| endopeptidase clp [Micromonospora sp. L5]
 gi|315408318|gb|ADU06435.1| Endopeptidase Clp [Micromonospora sp. L5]
          Length = 196

 Score = 47.3 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 62/186 (33%), Gaps = 31/186 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + ++  +I  ++ +D+   + + ++SPGGS  AG A++  ++ VKN    +      +
Sbjct: 37  ASANQICAQILLLAAEDAERDIFLYINSPGGSVSAGMAVYDTMRYVKNDVATLALGMAGS 96

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
                L + A+    A   S +                                      
Sbjct: 97  MGQFLLCAGAAGKRFALPHSRIMMHQPSGGMGG--------------------------- 129

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226
                  + +  + +         L+++      ++        R +T  +A++ GL+D 
Sbjct: 130 ---TAADITIQAENMLHVKRTMQELIAQHSGRTLEEIQRDWDRDRWFTAEQAREYGLVDQ 186

Query: 227 VGGQEE 232
           V  + +
Sbjct: 187 VLTRVD 192


>gi|18420643|ref|NP_568427.1| NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7); serine-type endopeptidase
           [Arabidopsis thaliana]
 gi|75309225|sp|Q9FN42|CLPP2_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit 2,
           mitochondrial; AltName: Full=Endopeptidase ClpP2;
           AltName: Full=nClpP7; Flags: Precursor
 gi|9759372|dbj|BAB09831.1| ATP-dependent protease proteolytic subunit ClpP-like protein
           [Arabidopsis thaliana]
 gi|26452073|dbj|BAC43126.1| putative ATP-dependent protease proteolytic subunit ClpP
           [Arabidopsis thaliana]
 gi|28950803|gb|AAO63325.1| At5g23140 [Arabidopsis thaliana]
 gi|332005743|gb|AED93126.1| ATP-dependent Clp protease proteolytic subunit 2 [Arabidopsis
           thaliana]
          Length = 241

 Score = 47.3 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 66/212 (31%), Gaps = 35/212 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G I D     ++ ++  +  ++ +  + + L+SPGG   AG AI+  +Q +++  
Sbjct: 58  IICINGPINDDTSHVVVAQLLYLESENPSKPIHMYLNSPGGHVTAGLAIYDTMQYIRSPI 117

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++  L + A     +   + V        Y                   
Sbjct: 118 STICLGQAASMASLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQ---------------- 161

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                          K + +    +   +     L  +    P D     +      T  
Sbjct: 162 --------------AKDITIHTKQIVRVWDALNELYVKHTGQPLDVVANNMDRDHFMTPE 207

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           EAK  G+ID V   +E    L    V    + 
Sbjct: 208 EAKAFGIIDEV--IDERPLELVKDAVGNESKD 237


>gi|297808311|ref|XP_002872039.1| hypothetical protein ARALYDRAFT_910322 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317876|gb|EFH48298.1| hypothetical protein ARALYDRAFT_910322 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 237

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 66/212 (31%), Gaps = 35/212 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G I D     ++ ++  +  ++ +  + + L+SPGG   AG AI+  +Q +++  
Sbjct: 54  IICINGPINDDTSHVVVAQLLYLESENPSKPIHMYLNSPGGHVTAGLAIYDTMQYIRSPI 113

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++  L + A     +   + V        Y                   
Sbjct: 114 STICLGQAASMASLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQ---------------- 157

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                          K + +    +   +     L  +    P D     +      T  
Sbjct: 158 --------------AKDITIHTKQIVRVWDALNELYVKHTGQPLDVVANNMDRDHFMTPE 203

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           EAK  G+ID V   +E    L    V    + 
Sbjct: 204 EAKAFGIIDEV--IDERPLELVKDAVGNESKD 233


>gi|217072528|gb|ACJ84624.1| unknown [Medicago truncatula]
          Length = 238

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++ +  + + L+SPGG+  AG AI+  +Q +++  
Sbjct: 55  IVCINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSPI 114

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + +        Y                   
Sbjct: 115 NTICLGQAASMGSLLLCAGAKGQRRALPNATIMIHQPSGGYSGQ---------------- 158

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                          K + +    +   +     L  +    P D      D   + T  
Sbjct: 159 --------------AKDIAIHTKQIVRMWDALNELYVKHTGQPLDVIQKNMDRDYFMTAE 204

Query: 217 EAKKVGLIDVVGG 229
           EAK+ G+ID V  
Sbjct: 205 EAKEFGIIDEVID 217


>gi|169824905|ref|YP_001692516.1| ATP-dependent protease Clp proteolytic subunit [Finegoldia magna
           ATCC 29328]
 gi|297587291|ref|ZP_06945936.1| ATP-dependent Clp protease proteolytic subunit [Finegoldia magna
           ATCC 53516]
 gi|302379561|ref|ZP_07268046.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Finegoldia
           magna ACS-171-V-Col3]
 gi|303234189|ref|ZP_07320835.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Finegoldia
           magna BVS033A4]
 gi|167831710|dbj|BAG08626.1| ATP-dependent protease Clp proteolytic subunit [Finegoldia magna
           ATCC 29328]
 gi|297575272|gb|EFH93991.1| ATP-dependent Clp protease proteolytic subunit [Finegoldia magna
           ATCC 53516]
 gi|302312468|gb|EFK94464.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Finegoldia
           magna ACS-171-V-Col3]
 gi|302494730|gb|EFL54490.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Finegoldia
           magna BVS033A4]
          Length = 195

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D  +  +I ++  +  +D    + + ++SPGGS  AG AI+  +Q VK   
Sbjct: 30  IIFVTGEVNDQMADLVIAQLLFLESEDPKKDIQLYINSPGGSVSAGLAIYDTMQYVKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S A     A   +       L         ++    +      
Sbjct: 90  STICVGMAASMGAILLTSGAKGKRYALPNADTLIHQPLGGAQGQASDIEIHAKN------ 143

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +        +++SE    P +K         I T  
Sbjct: 144 ------------------------ILKKRELLNKILSERTGQPLEKIERDTDRDFILTAE 179

Query: 217 EAKKVGLIDVVGG 229
           EAK+ GLID V  
Sbjct: 180 EAKEYGLIDEVIY 192


>gi|116785036|gb|ABK23566.1| unknown [Picea sitchensis]
          Length = 243

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G IED     ++ ++  +  ++ A  + + ++SPGG   AG AI+  +Q +++  
Sbjct: 59  IICINGVIEDDTAAVVVAQLLFLESENPAKPINLYINSPGGVVTAGLAIYDTMQYIRSPV 118

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L + A     +   + +                            
Sbjct: 119 STFCMGQAASMGSLLLAAGAKGERRSLPNARIMIHQPSGGASGQ---------------- 162

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +    +  +      L ++      DK    +      +  
Sbjct: 163 --------------ASDIAIQAKEILLTRDRLNSLYAKHTGQSIDKIEKCMERDMFMSPE 208

Query: 217 EAKKVGLIDVV 227
           EAK+ GL+D V
Sbjct: 209 EAKEFGLVDTV 219


>gi|126727090|ref|ZP_01742927.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Rhodobacterales bacterium HTCC2150]
 gi|126703518|gb|EBA02614.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Rhodobacterales bacterium HTCC2150]
          Length = 209

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 59/190 (31%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D  +  ++ ++  +  D+    + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 38  IIFVSGPVHDEMATTIVAQLLFLEADNPTKEIAMYINSPGGVVTSGLSIYDTMQYIKPKV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +    +  +   S +        Y                   
Sbjct: 98  STVCIGQAASMGSLLLAAGEPGMRYSLPNSRIMVHQPSGGYQG----------------- 140

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                +    +    K    +  +        ++ V             L      +  E
Sbjct: 141 --QATDIMIHAAETQKLKDRLNGIYVKHTGQTMKKV----------VDGLERDNFMSAEE 188

Query: 218 AKKVGLIDVV 227
           AK  GL+D +
Sbjct: 189 AKSWGLVDEI 198


>gi|270261418|ref|ZP_06189691.1| ATP-dependent Clp protease proteolytic subunit 1 [Serratia
           odorifera 4Rx13]
 gi|270044902|gb|EFA17993.1| ATP-dependent Clp protease proteolytic subunit 1 [Serratia
           odorifera 4Rx13]
          Length = 197

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 65/191 (34%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D+  + +  ++  +  ++    + + ++SPGG+  +G AI+  ++ +  + 
Sbjct: 33  IIFLNGEVNDAIAELVCAQLLFLEAENPEKPIHLYINSPGGAITSGFAIYDTMRFINAQV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +                     +    S+   + +  + P  +  L    + +     
Sbjct: 93  HTLC--------------------MGTARSMGSFLLMAGE-PGHRAALPNASLHVHQPLG 131

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216
                    F                 +    +RL +E      ++   + D  R  T  
Sbjct: 132 GFQGQASDIFIHAEEMRR---------TKDLVIRLYAEHCGHSAEEVEQVLDRDRFMTAD 182

Query: 217 EAKKVGLIDVV 227
           EA + GL+D V
Sbjct: 183 EAVEWGLVDRV 193


>gi|224094113|ref|XP_002310077.1| predicted protein [Populus trichocarpa]
 gi|222852980|gb|EEE90527.1| predicted protein [Populus trichocarpa]
          Length = 244

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I+D     ++ ++  +  ++ +  + + L+SPGG   AG AI+  +Q +++  
Sbjct: 61  IVCINGPIDDDTSHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPV 120

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++  L + A     A   + +        Y      +      I  V  
Sbjct: 121 TTICLGQAASMASLLLAAGAKGERKALPNATIMIHQPSGGYSGQAKDMTIHTKQIVRV-- 178

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                       +    +L  +    P D      D   + T  
Sbjct: 179 ----------------------------WDALNQLYCKHTGQPLDVIQKNMDRDYFMTPE 210

Query: 217 EAKKVGLIDVVGG 229
           EAK+ G+ID V  
Sbjct: 211 EAKEFGIIDDVID 223


>gi|302865150|ref|YP_003833787.1| endopeptidase Clp [Micromonospora aurantiaca ATCC 27029]
 gi|302568009|gb|ADL44211.1| Endopeptidase Clp [Micromonospora aurantiaca ATCC 27029]
          Length = 196

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 63/190 (33%), Gaps = 31/190 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + ++  +I  ++ +D+   + + ++SPGGS  AG A++  ++ VKN    +      +
Sbjct: 37  ASANQICAQILLLAAEDAERDIFLYINSPGGSVSAGMAVYDTMRYVKNDVATLALGMAGS 96

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
                L + A+    A   S +                                      
Sbjct: 97  MGQFLLCAGAAGKRFALPHSRIMMHQPSGGMGG--------------------------- 129

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226
                  + +  + +         L+++      ++        R +T  +A++ GL+D 
Sbjct: 130 ---TAADITIQAENMLHVKRTMQELIAQHSGRTLEEIQRDWDRDRWFTAEQAREYGLVDQ 186

Query: 227 VGGQEEVWQS 236
           V  + +   +
Sbjct: 187 VLTRVDQLAA 196


>gi|290894026|ref|ZP_06557000.1| serine protease [Listeria monocytogenes FSL J2-071]
 gi|290556370|gb|EFD89910.1| serine protease [Listeria monocytogenes FSL J2-071]
          Length = 235

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 37/208 (17%)

Query: 39  ARIAIRGQIE----DSQELIERI--ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
           A I I G+I     D ++       + +    +   + + ++SPGG+ + G AI   I+ 
Sbjct: 16  AEIYIYGEIVSFKWDEEDTTASSFQKDLKELGNIETINLHVNSPGGNVFEGIAISNMIKA 75

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            K +  VI  V  +AAS   +I   ++ +V  E S+       +        L K    +
Sbjct: 76  HKAK--VIAYVDALAASIASVIVAGADKVVMYENSMQMIHNPTWNVSGNSTELRKHADDL 133

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
            ++                                    L      +  +K   +     
Sbjct: 134 DAIAQ----------------------------ASVLTYLSKAGDKLSEEKIKQIMAEET 165

Query: 213 W-TGAEAKKVGLIDVVGGQEEVWQSLYA 239
           W +  +A   GL D +    ++   +  
Sbjct: 166 WLSAKDALGHGLCDEILEANKIAAYVEG 193


>gi|227875044|ref|ZP_03993189.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mobiluncus
           mulieris ATCC 35243]
 gi|306817331|ref|ZP_07451076.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mobiluncus
           mulieris ATCC 35239]
 gi|227844322|gb|EEJ54486.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mobiluncus
           mulieris ATCC 35243]
 gi|304649772|gb|EFM47052.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mobiluncus
           mulieris ATCC 35239]
          Length = 292

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 64/210 (30%), Gaps = 37/210 (17%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSA 80
            +     + ++  V  + I G I +      ++   I     +  +  + + L+SPGG  
Sbjct: 8   LTPEPSTDPDADAVRVLRISGTIAEESWFDDDITPSIFASELNAGSGPVTIWLNSPGGDV 67

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
            A   I+  +  +     V   +  +AASA  +I+ A+  +  +  S++           
Sbjct: 68  VAAAQIYNML--IDYPGEVTVNIDGIAASAASVIAMAATKVAMSPVSMLMIHNPATMAVG 125

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
            K  L +    + SV                                  +    E  N+ 
Sbjct: 126 DKDELARAMSMLDSV------------------------------KESILNAYQEKTNLS 155

Query: 201 YDKTLVLSDGRIWT-GAEAKKVGLIDVVGG 229
             K   L D   W     A  +G  D +  
Sbjct: 156 RAKLSKLMDAETWMDARAAIDMGFADELLT 185


>gi|163847092|ref|YP_001635136.1| endopeptidase Clp [Chloroflexus aurantiacus J-10-fl]
 gi|222524926|ref|YP_002569397.1| Endopeptidase Clp [Chloroflexus sp. Y-400-fl]
 gi|163668381|gb|ABY34747.1| Endopeptidase Clp [Chloroflexus aurantiacus J-10-fl]
 gi|222448805|gb|ACM53071.1| Endopeptidase Clp [Chloroflexus sp. Y-400-fl]
          Length = 221

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 70/200 (35%), Gaps = 34/200 (17%)

Query: 40  RIAIRGQIEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           RI I G   D Q    ++ ++  +  +D    + + ++SPGGS  AG  I+  +  ++  
Sbjct: 52  RIVILGTPIDDQIANLIVAQLLFLESEDPDRDIWLYINSPGGSVTAGLGIYDTMHHIRPD 111

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
              +      + +   L   A     +   S                       +I    
Sbjct: 112 VATVCVGMAGSMATPILAGGAKGKRYSLPHS-----------------------TIHMHP 148

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215
           +       +P  E+  +        +         L+++    P ++     D  ++ T 
Sbjct: 149 AGGGARGYAPDVEIMARE-------LLRLQQLVRELLAKDTGQPIERIAKDFDRDLFMTP 201

Query: 216 AEAKKVGLIDVVGGQEEVWQ 235
            +AK+ G+ID +  +E+V +
Sbjct: 202 EQAKEYGIIDEILTREDVKK 221


>gi|25028868|ref|NP_738922.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           efficiens YS-314]
 gi|259507930|ref|ZP_05750830.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Corynebacterium efficiens YS-314]
 gi|67460556|sp|Q8FN36|CLPP2_COREF RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|23494155|dbj|BAC19122.1| putative endopeptidase Clp chain P1 [Corynebacterium efficiens
           YS-314]
 gi|259164425|gb|EEW48979.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Corynebacterium efficiens YS-314]
          Length = 199

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 43  IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102
           +  +I +  +L  +I  +S +D    + + ++SPGGS  AG AI+  ++           
Sbjct: 36  VDDEIAN--KLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYDTMKYSPCDIATYGM 93

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
               +     L         A   + +                                 
Sbjct: 94  GLAASMGQFLLSGGTPGKRYALPHARIMMHQPSAGVGG---------------------- 131

Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKV 221
                       + +  +    +     +L++E     +++    SD  R +T  +AK+ 
Sbjct: 132 --------TAADIAIQAEQFAQTKREMAKLIAEHTGQTFEQVTKDSDRDRWFTAEQAKEY 183

Query: 222 GLIDVVGGQEE 232
           GL+D V    E
Sbjct: 184 GLVDHVITLAE 194


>gi|256556952|gb|ACU83574.1| ATP-dependent Clp protease subunit [uncultured bacterium
           HF130_AEPn_2]
          Length = 211

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 60/197 (30%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     +  ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 45  VIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L + A         S V     L  +      ++     I  +  
Sbjct: 105 STTCIGQACSMGAFLLTAGAEGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFI-- 162

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L+++      ++     +     +  
Sbjct: 163 ----------------------------RERLNTLMAKHSGHTLEEIERDTNRDNFMSAE 194

Query: 217 EAKKVGLIDVVGGQEEV 233
            A++ GLID V  +   
Sbjct: 195 AAREYGLIDAVIDKRPA 211


>gi|227824397|ref|ZP_03989229.1| ATP-dependent Clp protease [Acidaminococcus sp. D21]
 gi|226904896|gb|EEH90814.1| ATP-dependent Clp protease [Acidaminococcus sp. D21]
          Length = 199

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+IED  +  ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q ++   
Sbjct: 32  IIFVTGEIEDHMANLIVAQLLFLESEDPDKDIHLYINSPGGSVSAGLAIYDTMQYIRPDV 91

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++  L + A     A   S V     L         ++     I  V  
Sbjct: 92  STICVGMAASMASILLAAGAKGKRFALPHSRVMIHQPLGGAQGQATDIEIHAREILRV-- 149

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                            ++++       +            T  
Sbjct: 150 ----------------------------REEMNQILAAHTGKDPETIKLDTERDHYLTAD 181

Query: 217 EAKKVGLIDVV 227
           EA   GLID V
Sbjct: 182 EALSYGLIDQV 192


>gi|242035957|ref|XP_002465373.1| hypothetical protein SORBIDRAFT_01g037430 [Sorghum bicolor]
 gi|241919227|gb|EER92371.1| hypothetical protein SORBIDRAFT_01g037430 [Sorghum bicolor]
          Length = 283

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I   G +ED     ++ ++  +   D    +I+ ++SPGGS  AG AIF  ++ ++   
Sbjct: 108 IIRCGGPVEDDMANIIVAQLLYLDAIDPTKDIIMYVNSPGGSVTAGMAIFDTMKHIRPDV 167

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L +       +   S +     L      +  L+     +     
Sbjct: 168 STVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQANEM----- 222

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                              ++     P DK           +  
Sbjct: 223 -------------------------LHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAK 257

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 258 EAKEYGLIDGV 268


>gi|332557495|ref|ZP_08411817.1| Periplasmic serine protease [Rhodobacter sphaeroides WS8N]
 gi|332275207|gb|EGJ20522.1| Periplasmic serine protease [Rhodobacter sphaeroides WS8N]
          Length = 306

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 81/223 (36%), Gaps = 24/223 (10%)

Query: 39  ARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           A + +RG +  +               L E ++ ++  + A A+++ + SPGG     EA
Sbjct: 62  AVVPVRGILTPNMAQYERWFGWATYHGLAETLDHLAASEDAAAIVLEIDSPGGLVTGIEA 121

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
              AI      KPV   V  +AASA Y ++  ++ IV    ++ GSIGV          +
Sbjct: 122 AAEAIAAAAAVKPVHALVSPLAASAAYWLASQASEIVMTPGAVAGSIGV---ALTTAAHV 178

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204
                  +  + S   A               +Q  +D +   F   VS  R IP  +  
Sbjct: 179 QPGANGAQIFEMSSRHARAKRPDASTEAGRAELQRSLDEAEAAFHAAVSAGRAIPAAELA 238

Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                       G  +   EA + GL D    +   ++ L A 
Sbjct: 239 ARLSVTDDPQDGGATFRAPEAIRRGLADRTETRAAFYERLTAR 281


>gi|261253459|ref|ZP_05946032.1| ATP-dependent Clp protease proteolytic subunit [Vibrio orientalis
           CIP 102891]
 gi|260936850|gb|EEX92839.1| ATP-dependent Clp protease proteolytic subunit [Vibrio orientalis
           CIP 102891]
          Length = 208

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L  +      +      I ++K 
Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQ 161

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                              L++E    P +               
Sbjct: 162 KLNK------------------------------LLAEHTGQPLEVIERDTDRDNFMAAD 191

Query: 217 EAKKVGLIDVVGG 229
           +A + GL+D V  
Sbjct: 192 QAVEYGLVDAVLT 204


>gi|260776382|ref|ZP_05885277.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260607605|gb|EEX33870.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 208

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L  +      +      I ++K 
Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQ 161

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                              L++E    P +               
Sbjct: 162 KLNK------------------------------LLAEHTGQPLEVIERDTDRDNFMAAD 191

Query: 217 EAKKVGLIDVVGG 229
           +A + GL+D V  
Sbjct: 192 QAVEYGLVDAVLT 204


>gi|251798425|ref|YP_003013156.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
           sp. JDR-2]
 gi|247546051|gb|ACT03070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. JDR-2]
          Length = 195

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 62/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D     +I ++  ++ DD    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IIFLGSAIDDDVANSVIAQLLFLAADDPEKDIHLYINSPGGSVTAGMAIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + V     L     V+     + +    +  
Sbjct: 89  STICMGMAASMGSLLLTAGAKGKRFALPNAEVMIHQPLG---GVRGQASDIKIHADWILK 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
           +  K                              +  E    PY+K           +  
Sbjct: 146 TKQK---------------------------LNEIYVERTGQPYEKIDRDTDRDNFMSAE 178

Query: 217 EAKKVGLIDVVGG 229
           +A   GLID V  
Sbjct: 179 DALNYGLIDKVIT 191


>gi|302389784|ref|YP_003825605.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermosediminibacter oceani DSM 16646]
 gi|302200412|gb|ADL07982.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermosediminibacter oceani DSM 16646]
          Length = 236

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 69/229 (30%), Gaps = 37/229 (16%)

Query: 30  HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77
            +     ++  I I GQIE              + +I ++  I ++     L+V L++ G
Sbjct: 30  ELPKPESNIHCITIVGQIEGHLILPPQNKTTKYEHIIPQLVAIEQNPKIEGLLVILNTIG 89

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G   AG A+   I                       +       +    ++      + +
Sbjct: 90  GDVEAGLALAEIIAS--------------MTKPTVSLVLGGGHSIGVPIAVASDYSFIAE 135

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
              +     +L   +  V  +                    + +     H  +   +  R
Sbjct: 136 TATMTIHPIRLTGLVIGVPQT-----------FEYLDKMQDRVIKFVVEHSKIEEETLRR 184

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
            +     L    G +  GA+A + GLI+ VGG     + L  L  ++  
Sbjct: 185 LMFNTGQLARDIGTVLVGADAVRYGLINEVGGLGAAVKKLEELISEKKK 233


>gi|94958239|gb|ABF47251.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           xylosus]
          Length = 194

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 65/192 (33%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  QI+D  +  ++ ++  +   D+   + + ++SPGGS  AG AI+  IQ +K   
Sbjct: 29  IIMLGSQIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + V     L         ++           
Sbjct: 89  QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216
                                   +  +     ++++E      +K    +D     +  
Sbjct: 142 -----------------------HILKTRAKLNQILAERTGQSIEKIEKDTDRDNFLSAE 178

Query: 217 EAKKVGLIDVVG 228
           EAK+ GL+D V 
Sbjct: 179 EAKEYGLVDQVM 190


>gi|308050308|ref|YP_003913874.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ferrimonas
           balearica DSM 9799]
 gi|307632498|gb|ADN76800.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ferrimonas
           balearica DSM 9799]
          Length = 207

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 62/200 (31%), Gaps = 33/200 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 38  VIFLTGPVEDHMANLVVAQLLFLESENPDKDIYLYINSPGGSVTAGMSIYDTMQFIKPDV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L      +     + +  + +  
Sbjct: 98  STVCMGQAASMGAFLLAGGAKGKRHVLPNSRVMIHQPLG---GFQGQASDIAIHAQEILG 154

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                              L++E    P +            +  
Sbjct: 155 IKHK---------------------------LNLLLAEHTGQPMEVIERDTDRDNFMSAT 187

Query: 217 EAKKVGLIDVVGGQEEVWQS 236
           +A + GL+D V  +      
Sbjct: 188 DAVEYGLVDSVLTRRAADAE 207


>gi|312961789|ref|ZP_07776287.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           fluorescens WH6]
 gi|311284048|gb|EFQ62631.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           fluorescens WH6]
          Length = 211

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     +  ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 45  VIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L + A         S V     L  +      ++     I  +  
Sbjct: 105 STTCIGQACSMGAFLLTAGAEGKRYCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFI-- 162

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L+++      ++     +     +  
Sbjct: 163 ----------------------------RERLNTLMAKHSGHTLEEIERDTNRDNFMSAE 194

Query: 217 EAKKVGLIDVV 227
            A++ GLID V
Sbjct: 195 AAREYGLIDAV 205


>gi|69249001|ref|ZP_00604844.1| Peptidase S14, ClpP [Enterococcus faecium DO]
 gi|227550370|ref|ZP_03980419.1| endopeptidase Clp [Enterococcus faecium TX1330]
 gi|257879589|ref|ZP_05659242.1| peptidase S14 [Enterococcus faecium 1,230,933]
 gi|257882608|ref|ZP_05662261.1| peptidase S14 [Enterococcus faecium 1,231,502]
 gi|257885031|ref|ZP_05664684.1| peptidase S14 [Enterococcus faecium 1,231,501]
 gi|257888403|ref|ZP_05668056.1| peptidase S14 [Enterococcus faecium 1,141,733]
 gi|257890257|ref|ZP_05669910.1| peptidase S14 [Enterococcus faecium 1,231,410]
 gi|257893441|ref|ZP_05673094.1| peptidase S14 [Enterococcus faecium 1,231,408]
 gi|257897223|ref|ZP_05676876.1| peptidase S14 [Enterococcus faecium Com12]
 gi|257899224|ref|ZP_05678877.1| peptidase S14 [Enterococcus faecium Com15]
 gi|258616800|ref|ZP_05714570.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecium DO]
 gi|260559746|ref|ZP_05831926.1| peptidase S14 [Enterococcus faecium C68]
 gi|261207321|ref|ZP_05922008.1| peptidase S14 [Enterococcus faecium TC 6]
 gi|289566520|ref|ZP_06446943.1| Clp protease [Enterococcus faecium D344SRF]
 gi|293377995|ref|ZP_06624173.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium PC4.1]
 gi|293557243|ref|ZP_06675791.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1039]
 gi|293559757|ref|ZP_06676278.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1162]
 gi|293567607|ref|ZP_06678951.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1071]
 gi|293570370|ref|ZP_06681427.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E980]
 gi|294616541|ref|ZP_06696319.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1636]
 gi|294618382|ref|ZP_06697960.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1679]
 gi|294623239|ref|ZP_06702110.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium U0317]
 gi|314938917|ref|ZP_07846184.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133a04]
 gi|314943860|ref|ZP_07850593.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133C]
 gi|314948100|ref|ZP_07851501.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0082]
 gi|314951634|ref|ZP_07854679.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133A]
 gi|314993860|ref|ZP_07859194.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133B]
 gi|314996702|ref|ZP_07861725.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133a01]
 gi|68194308|gb|EAN08823.1| Peptidase S14, ClpP [Enterococcus faecium DO]
 gi|227180509|gb|EEI61481.1| endopeptidase Clp [Enterococcus faecium TX1330]
 gi|257813817|gb|EEV42575.1| peptidase S14 [Enterococcus faecium 1,230,933]
 gi|257818266|gb|EEV45594.1| peptidase S14 [Enterococcus faecium 1,231,502]
 gi|257820883|gb|EEV48017.1| peptidase S14 [Enterococcus faecium 1,231,501]
 gi|257824457|gb|EEV51389.1| peptidase S14 [Enterococcus faecium 1,141,733]
 gi|257826617|gb|EEV53243.1| peptidase S14 [Enterococcus faecium 1,231,410]
 gi|257829820|gb|EEV56427.1| peptidase S14 [Enterococcus faecium 1,231,408]
 gi|257833788|gb|EEV60209.1| peptidase S14 [Enterococcus faecium Com12]
 gi|257837136|gb|EEV62210.1| peptidase S14 [Enterococcus faecium Com15]
 gi|260074414|gb|EEW62736.1| peptidase S14 [Enterococcus faecium C68]
 gi|260078381|gb|EEW66085.1| peptidase S14 [Enterococcus faecium TC 6]
 gi|289161674|gb|EFD09551.1| Clp protease [Enterococcus faecium D344SRF]
 gi|291589708|gb|EFF21512.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1071]
 gi|291590588|gb|EFF22319.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1636]
 gi|291595359|gb|EFF26674.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1679]
 gi|291597346|gb|EFF28526.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium U0317]
 gi|291600607|gb|EFF30911.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1039]
 gi|291606305|gb|EFF35718.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1162]
 gi|291609548|gb|EFF38813.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E980]
 gi|292643360|gb|EFF61492.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium PC4.1]
 gi|313589140|gb|EFR67985.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133a01]
 gi|313591670|gb|EFR70515.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133B]
 gi|313596230|gb|EFR75075.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133A]
 gi|313597478|gb|EFR76323.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133C]
 gi|313641791|gb|EFS06371.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133a04]
 gi|313645436|gb|EFS10016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0082]
          Length = 197

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 62/192 (32%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ D     +I ++  +   DS   + + ++SPGGS  AG AI+  +  VK   
Sbjct: 29  IIMLSGQVTDDLANSIIAQLLFLDAQDSEKDIYLYINSPGGSVTAGMAIYDTMNFVKADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +       A   + +     L         ++           
Sbjct: 89  QTIVMGMAASMGSFLLTAGTKGKRFALPNAEIMIHQPLGGAQGQATEIEIAAR------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +  +     ++++E    P +     +D   + T  
Sbjct: 142 -----------------------HILQTRERLNKILAERTGQPLEVIEKDTDRDNYMTAE 178

Query: 217 EAKKVGLIDVVG 228
           +AK  GLID V 
Sbjct: 179 QAKAYGLIDEVM 190


>gi|262374981|ref|ZP_06068215.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           lwoffii SH145]
 gi|262309994|gb|EEY91123.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           lwoffii SH145]
          Length = 201

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED+    ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 36  VIFMTGEVEDNMANLIVAQMLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKPDV 95

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L +         E + V     L  +      ++     I  +  
Sbjct: 96  VTYCMGQAASMGAFLLNAGTKGKRYCLENARVMIHQPLGGFRGQASDIEIHAREILFI-- 153

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            RL++E     Y+K           T  
Sbjct: 154 ----------------------------KERLNRLMAEHSGQDYEKVARDTDRDNFMTAQ 185

Query: 217 EAKKVGLIDVVGG 229
           +AK+ GL+D V  
Sbjct: 186 QAKEYGLVDEVLT 198


>gi|261210563|ref|ZP_05924856.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC341]
 gi|262404275|ref|ZP_06080830.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC586]
 gi|260840348|gb|EEX66919.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC341]
 gi|262349307|gb|EEY98445.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC586]
          Length = 208

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L      +     + +  + + +
Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLG---GFQGQASDIQIHAQEILT 158

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                             RL++E    P +            +  
Sbjct: 159 IKNK---------------------------LNRLLAEHTGQPLEVIERDTDRDNFMSAD 191

Query: 217 EAKKVGLIDVV 227
           +A + GL+D V
Sbjct: 192 QAVEYGLVDAV 202


>gi|256824761|ref|YP_003148721.1| ATP-dependent Clp protease proteolytic subunit ClpP [Kytococcus
           sedentarius DSM 20547]
 gi|256688154|gb|ACV05956.1| ATP-dependent Clp protease proteolytic subunit ClpP [Kytococcus
           sedentarius DSM 20547]
          Length = 240

 Score = 46.9 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 55/181 (30%), Gaps = 30/181 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + ++I ++  +   D    +++ ++SPGGS  A  AI+  +Q ++            +
Sbjct: 79  ASADDIIAQLLVLESQDPDRDVLMYINSPGGSFTAMTAIYDTMQFIRPDVQTFVLGQAAS 138

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A A  L + A     A   S +       +                              
Sbjct: 139 AGAVLLAAGAPGKRFALPNSRILIHQPAME--------------------GMGGMASDLE 178

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226
              N                      ++      +K    +   +I + AEA++ GL+D 
Sbjct: 179 ITANEVLRMRTWLEETW---------AKHSGQTPEKVRKDIERDKILSAAEAQEYGLVDA 229

Query: 227 V 227
           V
Sbjct: 230 V 230


>gi|330921326|ref|XP_003299376.1| hypothetical protein PTT_10352 [Pyrenophora teres f. teres 0-1]
 gi|311326959|gb|EFQ92512.1| hypothetical protein PTT_10352 [Pyrenophora teres f. teres 0-1]
          Length = 248

 Score = 46.9 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 59/205 (28%), Gaps = 31/205 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+++D  S   + ++  +  D+    + + ++SPGGS  AG AI+  +  +K+  
Sbjct: 72  IICLNGEVDDFMSANAVAQLLFLEADNPEKPISMYINSPGGSVSAGLAIYDTMNYIKSPV 131

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L   A         + V                  +    K +  
Sbjct: 132 STICMGIAASMGSLLLAGGAEGQRYILPHARVMIHQPSG---GYSGKASDIADHAKEILR 188

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
              K      S +                               ++     +   +    
Sbjct: 189 IRDKLNRIYQSHLT-------------------------TKRTLEEIEKYMERDYYMDAQ 223

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALG 241
           EA + G++D +  + E         
Sbjct: 224 EAVEFGIVDKILEKRETSAKEEEKK 248


>gi|257467083|ref|ZP_05631394.1| prophage LambdaBa02, Clp protease family protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315918215|ref|ZP_07914455.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313692090|gb|EFS28925.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 371

 Score = 46.9 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/246 (11%), Positives = 76/246 (30%), Gaps = 46/246 (18%)

Query: 38  VARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           +A I I G I            S    + ++ +    + + + + ++S GG  +   AIF
Sbjct: 17  IAEIRIYGTITKWAWEEVGEVSSHSFAKELKNL---KNISKINLRVNSGGGDVFEANAIF 73

Query: 88  RAIQKVKNRKP--VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
             ++         +I  +  +AASA   +   ++ ++     L                 
Sbjct: 74  NLLKSYAKENNVEIIGYIDGLAASAASFLVLCAHKVIMGVGCLFMIHN------------ 121

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204
                   +     +K        +N                  + +      +   +  
Sbjct: 122 ------PWTYTKGNVKELGQTIDFLNK------------IKESILDIYETKTKLTRQEIS 163

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
             + + + ++ +EA + G +D +   E+V  ++     +  ++   +    KN       
Sbjct: 164 QKMDEEKWFSASEALESGFVDEMSEMEDVENNILNAAGENFVQNFINSEILKNKVEEIKN 223

Query: 265 NLSISS 270
            + + +
Sbjct: 224 KIKLEN 229


>gi|257463897|ref|ZP_05628283.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           D12]
 gi|317061426|ref|ZP_07925911.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           D12]
 gi|313687102|gb|EFS23937.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           D12]
          Length = 195

 Score = 46.9 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 61/180 (33%), Gaps = 28/180 (15%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  L+ ++  +  +D    +I+ ++SPGGS  AG AI+  +  VK     +      +  
Sbjct: 40  AASLVAQLLYLEAEDPTKDIILYINSPGGSVSAGLAIYDTMNYVKPDIQTVCIGQAASMG 99

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L +       A E S +     L            + +  K ++++  K        
Sbjct: 100 AFLLAAGTKGKRFALENSRIMIHQPLGGTGSGYHQATDVQIIAKELQATKEK-------- 151

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVG 228
                                 +++++     ++           T  EA K GLID+V 
Sbjct: 152 -------------------LAGIIAKNTGKSKEEVLEDTERDNYLTAEEAVKYGLIDMVM 192


>gi|50083772|ref|YP_045282.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           ADP1]
 gi|60389584|sp|Q6FEP8|CLPP_ACIAD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|49529748|emb|CAG67460.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           (Caseinolytic protease) (Protease Ti) (Heat shock
           protein F21.5) [Acinetobacter sp. ADP1]
          Length = 201

 Score = 46.9 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED+    ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 36  VIFLTGEVEDNMANLIVAQMLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKPDV 95

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L + A       E + V     L  +      ++     I  +  
Sbjct: 96  VTYCMGQAASMGAFLLNAGAKGKRYCLENARVMIHQPLGGFRGQASDIEIHAREILFI-- 153

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            RL++E     Y++           T  
Sbjct: 154 ----------------------------KERLNRLMAEHSGQDYERVARDTDRDNFMTAQ 185

Query: 217 EAKKVGLIDVV 227
            AK+ GL+D V
Sbjct: 186 AAKEYGLVDEV 196


>gi|23008901|ref|ZP_00050152.1| hypothetical protein Magn03003892 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 128

 Score = 46.9 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 39/74 (52%)

Query: 31  VEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
                  +ARI+I G I  S+   + IER+    +   ++VS+SSPGG+    E + R +
Sbjct: 48  FPATESQIARISIGGFIAGSESTRKLIERVGDAKAVQGVVVSISSPGGTXTGSEELXRXL 107

Query: 91  QKVKNRKPVITEVH 104
           + +  +KP++  V 
Sbjct: 108 RALAAKKPIVAFVD 121


>gi|254721484|ref|ZP_05183273.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A1055]
          Length = 251

 Score = 46.9 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 80/260 (30%), Gaps = 50/260 (19%)

Query: 27  WSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSP 76
           +       +   A + I G+I            S      ++ +  D     + + ++SP
Sbjct: 9   FFQMKASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDD--IETINLYINSP 66

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GGS +   AI   +Q+   +  +I+ +  + AS   ++   S+ I+    S++       
Sbjct: 67  GGSVFETMAIIAMLQRHHAK--IISYIDGIGASCASVLPMISDKIIMYANSMMMIHN--- 121

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
            + Y     D+L  +   ++                           +       L    
Sbjct: 122 AWTYASGNADQLRKAADDIE-------------------------RINQSMVQHYLTRAG 156

Query: 197 RNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
             +  D    L D   W +  EA   GL D +         L         + +K++   
Sbjct: 157 DKLDEDTLKQLLDAETWLSAEEAMGYGLCDEIIPANNATACL-------DEKWMKEYKNI 209

Query: 256 KNYWFCDLKNLSISSLLEDT 275
                    N+S + +LE  
Sbjct: 210 PQQLVNAQANISSNEMLERQ 229


>gi|150016209|ref|YP_001308463.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902674|gb|ABR33507.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           beijerinckii NCIMB 8052]
          Length = 199

 Score = 46.9 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 61/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D     ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IIMLSGEVNDDSANLIVAQLLFLESEDPDKDIYIYINSPGGSITAGNAIYDTMQYIKCDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S       A   + V     L  +       +           
Sbjct: 89  STICIGMAASMGAFLLSSGTKGKRFALPNAEVMIHQPLGGFQGQATDFEIHAKR------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +        R++SE+   P +     +      +  
Sbjct: 143 ------------------------ILKMKETLNRILSENTGKPLETIKADVERDNFMSAE 178

Query: 217 EAKKVGLIDVVGG 229
           EAK  GL+D V  
Sbjct: 179 EAKAYGLVDEVIT 191


>gi|154148860|ref|YP_001405639.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           hominis ATCC BAA-381]
 gi|166201810|sp|A7HZE8|CLPP_CAMHC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|153804869|gb|ABS51876.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           hominis ATCC BAA-381]
          Length = 195

 Score = 46.9 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I D  +  ++ ++  +  +D    + + ++SPGG   +G +I+  +  +K   
Sbjct: 28  IVMLSGEINDEVASSVVAQLLFLEAEDPDKDIYLYINSPGGVVTSGFSIYDTMNYIKPAV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L         A   + +     L         ++     I  +K+
Sbjct: 88  STICIGQAASMGAFLLSCGEKGKRYALPNARIMIHQPLGGAQGQATDIEITTKEILRIKA 147

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
           +  K                                +E+      K    +D   + +  
Sbjct: 148 TLNKIL------------------------------AENSGQKLSKIEKDTDRDFYMSAQ 177

Query: 217 EAKKVGLIDVV 227
           EA K GLID V
Sbjct: 178 EAVKYGLIDKV 188


>gi|89896100|ref|YP_519587.1| hypothetical protein DSY3354 [Desulfitobacterium hafniense Y51]
 gi|219670517|ref|YP_002460952.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Desulfitobacterium hafniense DCB-2]
 gi|116243113|sp|Q24S49|CLPP2_DESHY RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|89335548|dbj|BAE85143.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219540777|gb|ACL22516.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfitobacterium hafniense DCB-2]
          Length = 202

 Score = 46.9 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 30/191 (15%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q ++   
Sbjct: 30  IIFLGGPVTDDVANLVVAQMLFLEAEDPEKDIFLYINSPGGSISAGMAIYDTMQYIRADV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   + +     L     +     ++ +       
Sbjct: 90  HTICVGLAASMGAFLLTAGAKGKRQALPNAEILIHQPLIGGGGISGQATEIEI------- 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +        R+++E      ++        R  T  
Sbjct: 143 --------------------HAKHLLRVKERMNRILAERTGQTIERIEADTDRDRYMTAE 182

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 183 EAKEYGLIDEV 193


>gi|59711403|ref|YP_204179.1| ATP-dependent Clp protease proteolytic subunit [Vibrio fischeri
           ES114]
 gi|197335304|ref|YP_002155557.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           fischeri MJ11]
 gi|67460143|sp|Q5E6Q5|CLPP_VIBF1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706555|sp|B5FBZ8|CLPP_VIBFM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|59479504|gb|AAW85291.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Vibrio fischeri ES114]
 gi|197316794|gb|ACH66241.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           fischeri MJ11]
          Length = 207

 Score = 46.9 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 65/196 (33%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L      +     + +  + + +
Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLG---GFQGQASDIQIHAQEILT 158

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                              L++E    P +            +  
Sbjct: 159 IKKK---------------------------LNTLLAEHTGQPLEVIEQDTDRDNFMSAD 191

Query: 217 EAKKVGLIDVVGGQEE 232
           +A K GL+D V  + +
Sbjct: 192 DAVKYGLVDAVLNKRD 207


>gi|84499432|ref|ZP_00997720.1| Protease subunit of ATP-dependent Clp protease [Oceanicola
           batsensis HTCC2597]
 gi|84392576|gb|EAQ04787.1| Protease subunit of ATP-dependent Clp protease [Oceanicola
           batsensis HTCC2597]
          Length = 210

 Score = 46.9 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 58/190 (30%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++    + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 38  IIFVSGPVHDGMSSLIVAQLLHLEAENPTKDISMYINSPGGVVTSGLSIYDTMQYIKPKV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L   A+ +  A   + +        Y                   
Sbjct: 98  GTLVIGQAASMGSLLLAGGAAGMRYALPNAEIMVHQPSGGYRGQ---------------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                +    +    K  + +  +           V             L      T  E
Sbjct: 142 ---ATDIMIHARHTEKLKERLNKIYVKHTGQDFETV----------VDALERDNFMTAEE 188

Query: 218 AKKVGLIDVV 227
           AK  GLID +
Sbjct: 189 AKDWGLIDEI 198


>gi|227495366|ref|ZP_03925682.1| endopeptidase Clp [Actinomyces coleocanis DSM 15436]
 gi|226831120|gb|EEH63503.1| endopeptidase Clp [Actinomyces coleocanis DSM 15436]
          Length = 205

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 65/198 (32%), Gaps = 33/198 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D  + ++  ++  ++ +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 34  IIWLGGEVRDENANQICAQMLLLAAEDPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPDV 93

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +     L + A     A   + +     L                      
Sbjct: 94  VTVATGIAASMGQFLLTAGAKGKRYATPHARILLHQPLGGVGG----------------- 136

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            +++  D++         + +E      ++    +D   W T  
Sbjct: 137 -------------TTTEIRINADLILQMKRELAEITAERTGKTVEQIHADADRDHWYTAQ 183

Query: 217 EAKKVGLIDVVGGQEEVW 234
           EA + G  D +  + +  
Sbjct: 184 EALEYGFFDHIVTKADAV 201


>gi|304407481|ref|ZP_07389133.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           curdlanolyticus YK9]
 gi|304343432|gb|EFM09274.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           curdlanolyticus YK9]
          Length = 193

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 60/194 (30%), Gaps = 33/194 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D     +I ++  ++ DD    + + ++SPGGS  AG  IF  +Q +K   
Sbjct: 29  IIFLGSAIDDDVANSIIAQLLFLAADDPEKDIHLYINSPGGSVTAGMGIFDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     +   S V     L     V+     + +    +  
Sbjct: 89  STICVGMAASMGSLLLTAGAKGKRFSLPNSEVMIHQPLG---GVRGQASDIKIHADWIIK 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
           +  K                                 E    PY+K           +  
Sbjct: 146 TKQKLNQIYV---------------------------ERTGQPYEKIERDTDRDNFLSAE 178

Query: 217 EAKKVGLIDVVGGQ 230
           EA   GLID V   
Sbjct: 179 EAVAYGLIDKVVTS 192


>gi|291543930|emb|CBL17039.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ruminococcus
           sp. 18P13]
          Length = 196

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 57/176 (32%), Gaps = 28/176 (15%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +   D    + + ++SPGGS  AG AI+  +Q +K     I      +  A  
Sbjct: 44  VVAQLLYLESQDPDKDISLYINSPGGSVSAGFAIYDTMQYIKCDVSTICIGLAASMGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L S A     A   S +     L     +      + +  +++  +              
Sbjct: 104 LSSGAKGKRFALPNSEIMIHQPLIGGGGLSGQATDIQIRTENLLRTK------------- 150

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227
                             R++SE+     +            T  EA + GLID V
Sbjct: 151 --------------ENLNRILSENTGKSIEDIRRDTDRDNFMTANEAMEYGLIDKV 192


>gi|228474429|ref|ZP_04059164.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus hominis SK119]
 gi|314936932|ref|ZP_07844279.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus hominis subsp. hominis C80]
 gi|228271788|gb|EEK13135.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus hominis SK119]
 gi|313655551|gb|EFS19296.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus hominis subsp. hominis C80]
          Length = 195

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 65/197 (32%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  ++ ++  +   DS   + + ++SPGGS  AG AI+  IQ +K   
Sbjct: 29  IIMLGSAIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +       A   + V     L         ++           
Sbjct: 89  QTICIGMAASMGSFLLAAGTKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216
                                   +  +     R+++E      +     +D     T  
Sbjct: 142 -----------------------HILKTREKLNRILAERTGQNIETIQKDTDRDNFLTAD 178

Query: 217 EAKKVGLIDVVGGQEEV 233
           EAK+ GLID V   E++
Sbjct: 179 EAKEYGLIDHVMQPEDM 195


>gi|27467469|ref|NP_764106.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866412|ref|YP_188029.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus epidermidis RP62A]
 gi|242242138|ref|ZP_04796583.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis W23144]
 gi|251810202|ref|ZP_04824675.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282875651|ref|ZP_06284522.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus epidermidis SK135]
 gi|293368230|ref|ZP_06614859.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|38257586|sp|Q8CTE0|CLPP_STAES RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460168|sp|Q5HQW0|CLPP_STAEQ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|27315012|gb|AAO04148.1|AE016745_247 ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis ATCC 12228]
 gi|57637070|gb|AAW53858.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus epidermidis RP62A]
 gi|242234451|gb|EES36763.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis W23144]
 gi|251806254|gb|EES58911.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295678|gb|EFA88201.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus epidermidis SK135]
 gi|291317653|gb|EFE58070.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|319401155|gb|EFV89370.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus epidermidis FRI909]
 gi|329723271|gb|EGG59801.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus epidermidis VCU144]
 gi|329736698|gb|EGG72963.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus epidermidis VCU028]
 gi|329738003|gb|EGG74227.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus epidermidis VCU045]
          Length = 194

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 64/192 (33%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  QI+D  +  ++ ++  +   DS   + + ++SPGGS  AG AI+  IQ +K   
Sbjct: 29  IIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + V     L         ++           
Sbjct: 89  QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +  +     R++SE      +K           T A
Sbjct: 142 -----------------------HILKTREKLNRILSERTGQSIEKIQQDTDRDNFLTAA 178

Query: 217 EAKKVGLIDVVG 228
           EAK+ GLID V 
Sbjct: 179 EAKEYGLIDEVM 190


>gi|260889396|ref|ZP_05900659.1| putative prophage L54a, Clp protease [Leptotrichia hofstadii F0254]
 gi|260860807|gb|EEX75307.1| putative prophage L54a, Clp protease [Leptotrichia hofstadii F0254]
          Length = 260

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 88/262 (33%), Gaps = 42/262 (16%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD-----SATALIVSLSSPGGS 79
             + + V++     A + + G I   +   +  +++ + D         + + ++SPGGS
Sbjct: 5   LKFWNLVKNEEEKTAELILYGSIGSDEYWDDVSDKVFKQDIENLGDVENITLYINSPGGS 64

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
            ++  AI   ++  K +                 ++   + + A+  +++ S     + P
Sbjct: 65  VFSAVAIANTLKNHKAK-----------------VTANIDGLAASAATIITSACDTVRMP 107

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
               F+     +  +      +        +N     +++  ++ +              
Sbjct: 108 KNALFMIH---NPITFAYGNNQEMQKTVEMLNKVKNSIIETYLNKA------------KT 152

Query: 200 PYDKTLVLSDGRIWT-GAEAKKVGLIDVVGGQEE----VWQSLYALGVDQSIRKIKDWNP 254
             +    L D   W     AK+ G +D +  +E     V   L    +   I K K++  
Sbjct: 153 DKETLSELMDNETWMDAETAKEYGFVDEIVNEEVGKEFVENKLIINNMAFDISKFKNFRK 212

Query: 255 PKNYWFCDLKNLSISSLLEDTI 276
            K+    + KN     +  + +
Sbjct: 213 VKDIVIDNKKNTKEVKMTLEEL 234


>gi|184154836|ref|YP_001843176.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           fermentum IFO 3956]
 gi|227514403|ref|ZP_03944452.1| endopeptidase Clp [Lactobacillus fermentum ATCC 14931]
 gi|260663135|ref|ZP_05864027.1| Clp protease [Lactobacillus fermentum 28-3-CHN]
 gi|226706457|sp|B2GAL4|CLPP_LACF3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|183226180|dbj|BAG26696.1| endopeptidase Clp proteolytic subunit [Lactobacillus fermentum IFO
           3956]
 gi|227087269|gb|EEI22581.1| endopeptidase Clp [Lactobacillus fermentum ATCC 14931]
 gi|260552327|gb|EEX25378.1| Clp protease [Lactobacillus fermentum 28-3-CHN]
          Length = 196

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 59/195 (30%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IED  +  ++ ++  +   DS   + + ++SPGG   +G AI+  +  +K+  
Sbjct: 29  IIMLSGPIEDNMANSIVAQLLFLDAQDSTKDIYLYINSPGGVVTSGMAIYDTMNFIKSDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++  + S           S V            +  +            
Sbjct: 89  QTIVIGMAASMASVLVSSGTKGKRFGLPHSTVMIHQPSGGAQGQQTEIQIAAEE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +  +      +++++    +++           T  
Sbjct: 143 ------------------------ILKTRKMINEILAKNSGQSFEQVEQDTERDHYLTAQ 178

Query: 217 EAKKVGLIDVVGGQE 231
           EA   GL+D V    
Sbjct: 179 EAVDYGLLDGVMDSN 193


>gi|258621302|ref|ZP_05716336.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           VM573]
 gi|258625374|ref|ZP_05720271.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           VM603]
 gi|262166052|ref|ZP_06033789.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           VM223]
 gi|262171083|ref|ZP_06038761.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           MB-451]
 gi|258582365|gb|EEW07217.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           VM603]
 gi|258586690|gb|EEW11405.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           VM573]
 gi|261892159|gb|EEY38145.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           MB-451]
 gi|262025768|gb|EEY44436.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           VM223]
          Length = 208

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L  +      +      I ++  
Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAKEILTI-- 159

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                        +   RL++E    P +            +  
Sbjct: 160 ----------------------------KNKLNRLLAEHTGQPLEVIERDTDRDNFMSAD 191

Query: 217 EAKKVGLIDVV 227
           +A + GL+D V
Sbjct: 192 QAVEYGLVDAV 202


>gi|94968588|ref|YP_590636.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
           Koribacter versatilis Ellin345]
 gi|116243126|sp|Q1IRD8|CLPP_ACIBL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|94550638|gb|ABF40562.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
           Koribacter versatilis Ellin345]
          Length = 194

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 32/193 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D+    +I ++  +  +D    + + ++SPGGS  AG AI+  +Q ++   
Sbjct: 28  IIFLGTPIDDNVANLIIAQMLFLEAEDPEKDISLYINSPGGSITAGMAIYDTMQFIRPDV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S A     A  TS +     L      +     +         
Sbjct: 88  ATICIGQCASMGATLLASGAPGKRYALPTSRILIHQPLMSGLSGQATDIDIHAR------ 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                                   +        +L+++  N   +K    +    I    
Sbjct: 142 -----------------------EILRMREITNQLLAKHCNQRLEKVEKDVERDFIMNAQ 178

Query: 217 EAKKVGLIDVVGG 229
           +AK+ GL+D +  
Sbjct: 179 QAKEYGLVDDIIY 191


>gi|251791978|ref|YP_003006698.1| ATP-dependent Clp protease proteolytic subunit [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533365|gb|ACS96611.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Aggregatibacter aphrophilus NJ8700]
          Length = 193

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED+    ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  VIFLSGEVEDNMANLIVAQLLFLESEDPDKDINLYINSPGGSVTAGMAIYDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         + V     L  +                   
Sbjct: 89  RTLCVGQACSMGAFLLAGGAPGKRGVLPHARVMIHQPLGGFRGQ---------------- 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            +Q+    +          ++     P +     +D   + +  
Sbjct: 133 --------------ASDIQIHAQEILKIKSTLNERLAFHTGQPIETIEKDTDRDNFMSAE 178

Query: 217 EAKKVGLIDVV 227
           EA+  GL+D V
Sbjct: 179 EAQNYGLVDEV 189


>gi|308070425|ref|YP_003872030.1| ATP-dependent Clp protease proteolytic subunit (endopeptidase Clp)
           [Paenibacillus polymyxa E681]
 gi|310643606|ref|YP_003948364.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus
           polymyxa SC2]
 gi|305859704|gb|ADM71492.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Paenibacillus polymyxa E681]
 gi|309248556|gb|ADO58123.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
           polymyxa SC2]
          Length = 211

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D     +I ++  +S +D    + + ++SPGGS  AG  I+  +Q +K   
Sbjct: 44  IIFLSGPIDDDVANLVIAQLLFLSAEDPEKDINLYINSPGGSVTAGMGIYDTMQFIKPDV 103

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   S V     L         +            
Sbjct: 104 STICVGMAASMGSLLLTAGAPGKRYALTNSEVMIHQPLGGIQGQASDM------------ 151

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
                              +  D +  +     ++  E    P +K    +D   +    
Sbjct: 152 ------------------LIHADWIIKTRAKLNQIYVERTGQPLEKIERDTDRDFFMEAE 193

Query: 217 EAKKVGLIDVV 227
           EAK  G+ID V
Sbjct: 194 EAKAYGIIDQV 204


>gi|157693039|ref|YP_001487501.1| serine peptidase [Bacillus pumilus SAFR-032]
 gi|157681797|gb|ABV62941.1| possible S49 family serine peptidase [Bacillus pumilus SAFR-032]
          Length = 437

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 4/132 (3%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISRD 63
           +KKIK    + S   + ++        +     V  I I   +E    + IER    ++ 
Sbjct: 1   MKKIKISIALFSCFIICLL-LGVQLTAKSVDQKVHVIPIEDTVEKGLSKFIERSFEHAKS 59

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
           + A  +I+ +++PGG+  A   I   I+   +  PV   V+  A SAG  ++  ++ I  
Sbjct: 60  ERAKHIILDINTPGGAVDAALEIADTIRA--SDIPVTAFVNHRALSAGAFLALNADQIYM 117

Query: 124 AETSLVGSIGVL 135
                +G+  ++
Sbjct: 118 TPNGKMGAAAII 129


>gi|23099067|ref|NP_692533.1| translocation enhancing protein [Oceanobacillus iheyensis HTE831]
 gi|22777295|dbj|BAC13568.1| translocation enhancing protein [Oceanobacillus iheyensis HTE831]
          Length = 244

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 77/232 (33%), Gaps = 37/232 (15%)

Query: 28  SSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSS 75
           S+  +    ++  ++I GQ+E              + L+ ++  I ++     L++ L++
Sbjct: 33  SNVPQAPDSNIHVLSIIGQVEGHVQLPPQNKTTKYEHLLPQLIAIEQNPKIEGLVILLNT 92

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
            GG   AG A+   I  +      I      +      ++   + IV   T  +  I + 
Sbjct: 93  VGGDVEAGLALAEMISSLSKPTVSIVLGGGHSIGVPIAVATDHSFIVPTATMTIHPIRLT 152

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                V    + L                    ++  + +  +    +     F  L+  
Sbjct: 153 GLVIGVPQTFEYLD-------------------KMQERVIDFVVHHSNIKEEKFKELMFA 193

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
             N+  D       G    GA+A + GLI+ VGG +E    L      +   
Sbjct: 194 QGNLTRDI------GTNVVGADAVEFGLINDVGGVKEAMIKLNEFIGPKQKP 239


>gi|329924034|ref|ZP_08279297.1| nodulation efficiency protein NfeD [Paenibacillus sp. HGF5]
 gi|328940873|gb|EGG37181.1| nodulation efficiency protein NfeD [Paenibacillus sp. HGF5]
          Length = 453

 Score = 46.5 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 94/240 (39%), Gaps = 23/240 (9%)

Query: 2   EFVLKKIKTRY--VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIE 58
           +  +++  T    V++ L+++ +      S +  N   V  I ++  IE      +ER  
Sbjct: 4   KLRMRRFLTLTAAVVMMLISIGMYAAPMKSAMAANIGSVYVIPVKQPIERGLTSFMERGF 63

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118
           + +++ +A  +++ + +PGG       I   ++   +  P++  +   AASAG  I+  +
Sbjct: 64  KEAKEMAAGLIVLEIDTPGGLVDQAGEIATLMK--DSEIPIVAYITGDAASAGSYIALNA 121

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
           + I  +E S++G+  ++            +            K++ +  +E   +  ++ 
Sbjct: 122 DKIAMSEGSMIGAAYMVDARGNRIEDAKLVSW---------WKSKMAGAAEAGGRNKEIA 172

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSL 237
             + D +    +  +      P +           T  EA K G  D +    EEV   +
Sbjct: 173 MGMADINLKVDMPEIGL-TKQPGEII-------SLTHDEALKTGYADTIANSTEEVITWM 224


>gi|293610272|ref|ZP_06692573.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827504|gb|EFF85868.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325124452|gb|ADY83975.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 201

 Score = 46.5 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED+    ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 36  VIFLTGEVEDNMANLIVAQMLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKPDV 95

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L + A       E + V     L  +      ++     I  +  
Sbjct: 96  VTYCMGQAASMGAFLLNAGAKGKRYCLENARVMIHQPLGGFRGQASDIEIHAREILFI-- 153

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            RL++E     Y+            T  
Sbjct: 154 ----------------------------KERLNRLMAEHSGQDYETVARDTDRDNFMTAQ 185

Query: 217 EAKKVGLIDVV 227
            AK+ GL+D V
Sbjct: 186 AAKEYGLVDQV 196


>gi|269795730|ref|YP_003315185.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sanguibacter
           keddieii DSM 10542]
 gi|269097915|gb|ACZ22351.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sanguibacter
           keddieii DSM 10542]
          Length = 232

 Score = 46.5 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 61/180 (33%), Gaps = 27/180 (15%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   +    +I+ ++SPGGS  A  AI+  +Q + ++   +      +
Sbjct: 68  ASADDVMAQLLVLESQEPNRDIILYINSPGGSFTAMTAIYDTMQYITSQVQTVCLGQAAS 127

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L +      +A   + V       +        D    + + ++           
Sbjct: 128 AAAVLLAAGTPGKRLALPNARVLIHQPAMEGGNYAQASDIEIHANELIRMRE-------- 179

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
                        +  +      R V + R         +   +I +  +A   GL+D +
Sbjct: 180 ------------WLESTLALHSGRDVEQVRK-------DIERDKILSAQQAVDYGLVDSI 220


>gi|298529223|ref|ZP_07016626.1| protein of unknown function DUF107 [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510659|gb|EFI34562.1| protein of unknown function DUF107 [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 431

 Score = 46.5 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 84/235 (35%), Gaps = 37/235 (15%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPH-VARIAIRGQIEDSQE--LIERIERISRDDSATA 68
           + +  L ++ ++ FS      D + H + ++ I G I  + E  L + + R   +D   A
Sbjct: 4   FKICFLASIILLAFSLVFADRDPASHQILKVDIDGPITPATEELLQDSLRRAHDEDFI-A 62

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           L++ L +PGG     E++   ++ +      +    +   +           + A++ ++
Sbjct: 63  LMIRLDTPGGLV---ESMRNMVKDILASDLPVIVWVDPPGARATSAGVFL--VAASDHAV 117

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
           +     +                             SP +    +  + MQ  + +    
Sbjct: 118 MSPQTTIGSA--------------------------SPVTMGGEEQDETMQSKIINEMLS 151

Query: 189 FVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSLYALG 241
            VR V++ +    +     +++       EA ++ +ID +    +++   L   G
Sbjct: 152 LVRTVAKDKGRNVEWYEKAVTEAANIDSEEALQLRVIDHIATSTDDLLSQLGKKG 206


>gi|302804055|ref|XP_002983780.1| hypothetical protein SELMODRAFT_48156 [Selaginella moellendorffii]
 gi|300148617|gb|EFJ15276.1| hypothetical protein SELMODRAFT_48156 [Selaginella moellendorffii]
          Length = 206

 Score = 46.5 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++    + + ++SPGG   AG AI+  +Q +++  
Sbjct: 32  IVCIHGPIADDTASLVVAQLLYLESENPLKPIHLYINSPGGVVTAGLAIYDTMQYIRSPV 91

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +       A++   +  A+       +     + V             + +  + +  
Sbjct: 92  STLCVG---QAASMGSLLLAAGEPGQRRSLPNARVMVHQPSGGASGQASDIAIQAREI-- 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                                            +L ++      +K    +      +  
Sbjct: 147 -------------------------LDMRSRLNKLYAKHTGSSIEKIDQSMERDHFMSPE 181

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 182 EAKEFGLIDEV 192


>gi|269837882|ref|YP_003320110.1| hypothetical protein Sthe_1855 [Sphaerobacter thermophilus DSM
           20745]
 gi|269787145|gb|ACZ39288.1| protein of unknown function DUF107 [Sphaerobacter thermophilus DSM
           20745]
          Length = 456

 Score = 46.5 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 69/220 (31%), Gaps = 29/220 (13%)

Query: 11  RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATA 68
           R  +L    L  +    +  V+  +P V  + I G I    +  +   +    R   A+A
Sbjct: 12  RLTILITAVLLALASMIAPGVQAATPSVMLLDIDGAITPVVANYVERGLRDAER-VGASA 70

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           +++ +++PGG + A   I   I                A+    ++  A +   A    +
Sbjct: 71  VVLRMNTPGGLSSAMNDITTDI---------------FASPVPVIVYVAPSGARAGSAGV 115

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
             +                       + S+            +       + V D+    
Sbjct: 116 YITYAAHVAAMAPSTN----------IGSATPVFLDDSGQPQDADDAMTQKVVNDAVAQI 165

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
                +  RN  + +   + +    T  +A ++ +ID++ 
Sbjct: 166 RGFAEARGRNADWAE-QAVREAANITAQQALELNVIDLIA 204


>gi|226953943|ref|ZP_03824407.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           ATCC 27244]
 gi|294651552|ref|ZP_06728861.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226835297|gb|EEH67680.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           ATCC 27244]
 gi|292822575|gb|EFF81469.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 201

 Score = 46.5 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED+    ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 36  VIFLTGEVEDNMANLIVAQMLFLEAENPEKDIHLYINSPGGSVTAGMAIYDTMQFIKPDV 95

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L + A       E + V     L  +      ++     I  +  
Sbjct: 96  VTYCMGQAASMGAFLLNAGAKGKRYCLENARVMIHQPLGGFRGQASDIEIHAREILFI-- 153

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            RL++E     Y+            T  
Sbjct: 154 ----------------------------KERLNRLMAEHSGQDYETVARDTDRDNFMTAQ 185

Query: 217 EAKKVGLIDVV 227
            AK+ GL+D V
Sbjct: 186 AAKEYGLVDQV 196


>gi|220931198|ref|YP_002508106.1| peptidase S14 ClpP [Halothermothrix orenii H 168]
 gi|219992508|gb|ACL69111.1| peptidase S14 ClpP [Halothermothrix orenii H 168]
          Length = 234

 Score = 46.5 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 68/210 (32%), Gaps = 49/210 (23%)

Query: 31  VEDNSPHVARIAIRGQI------EDSQELI------ERIERISRDDSATALIVSLSSPGG 78
             ++  + A I + G I      ED +++I       ++ +I+ D     +IV L+S GG
Sbjct: 10  FNESDNNAAEIYLHGPIRNPLPDEDEEDVITLKEVRNKLNKITADK----IIVHLNSTGG 65

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             +   AI    +  K    +I     +AAS G +I  A + I     S++         
Sbjct: 66  DLFQSVAIHNLFKDHKAE--IIMINDGIAASGGSIILMAGDKIKFYPNSIMMIHA----- 118

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                          ++     K       +++     + ++                  
Sbjct: 119 -------------AHTITYGDAKYHREVARKLDKIDKSLKENYSQRFTGA---------- 155

Query: 199 IPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
               +   L     W T  EAK+ G  D +
Sbjct: 156 --EKELEKLIQEETWLTAKEAKEKGFCDEI 183


>gi|254572225|ref|XP_002493222.1| hypothetical protein [Pichia pastoris GS115]
 gi|238033020|emb|CAY71043.1| Hypothetical protein PAS_chr3_0979 [Pichia pastoris GS115]
 gi|328352764|emb|CCA39162.1| ATP-dependent Clp protease, protease subunit [Pichia pastoris CBS
           7435]
          Length = 226

 Score = 46.5 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 29/191 (15%)

Query: 40  RIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D+Q   +  ++  +    ++  + + ++SPGGS  AG AI+  IQ ++   
Sbjct: 52  IIYLAGGIDDAQATSITAQLLYLESQSTSKQINIYINSPGGSVTAGLAIYDTIQYIRAPV 111

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      + ++  L S      +    + +                D    +   + +
Sbjct: 112 STVCLGQACSMASLLLASGTHGKRLILPNATIMVHQPSSANGIKGQATDIEIYARHIINT 171

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216
              K +      ++P                          +  D+   L +  R     
Sbjct: 172 -KQKLQTLYLKHMSPT-------------------------MTVDEITALLERDRFMEPE 205

Query: 217 EAKKVGLIDVV 227
           EA  +GL D V
Sbjct: 206 EAVSLGLADRV 216


>gi|228966903|ref|ZP_04127944.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228792798|gb|EEM40359.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
          Length = 241

 Score = 46.5 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 62/223 (27%), Gaps = 38/223 (17%)

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
             + + + ++SPGGS + G AI+  +++ K +      V  +AAS   +I+ A + I   
Sbjct: 44  DVSTINLHVNSPGGSVFEGIAIYNMLKRHKAKVN--VYVDALAASIASVIAMAGDTIYMP 101

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
           + S++                                                       
Sbjct: 102 KNSMLMIHN----------------------------PWTWTEGNATELRKAADDLDRIG 133

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
           +      L      +  +    + D   W +  EA + GL D       V +    +   
Sbjct: 134 NSSKQTYLQKAGEKLTDEMLQEMLDAETWLSADEAYEYGLCD-------VVEEANQMAAS 186

Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
                +  +           +    +  ++    + ++ K   
Sbjct: 187 LDKDVLSKYKNVPKQLKNQDETKLSADEMKIRQQIAEEAKANA 229


>gi|227495367|ref|ZP_03925683.1| endopeptidase Clp [Actinomyces coleocanis DSM 15436]
 gi|226831121|gb|EEH63504.1| endopeptidase Clp [Actinomyces coleocanis DSM 15436]
          Length = 211

 Score = 46.5 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 57/186 (30%), Gaps = 28/186 (15%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D  + + + ++SPGGS  A  AI+  +Q +K +   +      +
Sbjct: 54  ASADDIMAQLLVLESQDPDSMITMYINSPGGSFTAMTAIYDTMQYIKPQVQTVCLGQAAS 113

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L   A    +A   + V       +                              
Sbjct: 114 AAAVLLAGGAPGRRLALPNARVMIHQPAME--------------------GMRGQASDIE 153

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
                            ++H    +    R         +   +I T  +A + GLID V
Sbjct: 154 IVAEEMERMRTWLEETIAHHSGREIEQVRR--------DIDRDKILTAQQALEYGLIDQV 205

Query: 228 GGQEEV 233
               + 
Sbjct: 206 LTSRKA 211


>gi|226533042|ref|NP_001147355.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
 gi|194700894|gb|ACF84531.1| unknown [Zea mays]
 gi|195610476|gb|ACG27068.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
          Length = 260

 Score = 46.5 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++ A  + + ++SPGG   AG AI+  +Q +++  
Sbjct: 63  IVCIHGPITDDTASLVVAQLLFLESENPAKPVHLYINSPGGVVTAGLAIYDTMQYIRSPV 122

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      + ++  L + AS    A   + V                            
Sbjct: 123 TTLCIGQAASMASLLLAAGASGERRALPNARVMIHQPSGGASGQ---------------- 166

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +    +        ++ ++      D+    +         
Sbjct: 167 --------------ASDIAIHAKEILKVRDRLNKIYAKHTGQAIDRIEQCMERDMFMDPE 212

Query: 217 EAKKVGLIDVV 227
           EA + GLID V
Sbjct: 213 EAHEWGLIDEV 223


>gi|229591362|ref|YP_002873481.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           fluorescens SBW25]
 gi|259585962|sp|C3JYK0|CLPP_PSEFS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|229363228|emb|CAY50311.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudomonas
           fluorescens SBW25]
          Length = 211

 Score = 46.5 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 59/197 (29%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     +  ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 45  VIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L + A         S V     L  +      ++     I  +  
Sbjct: 105 STTCIGQACSMGAFLLTAGAEGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFI-- 162

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L+++      ++     +     +  
Sbjct: 163 ----------------------------RERLNTLMAKHSGHTLEEIERDTNRDNFMSAE 194

Query: 217 EAKKVGLIDVVGGQEEV 233
            A+  GLID V  +   
Sbjct: 195 AARDYGLIDAVIDKRPA 211


>gi|294500553|ref|YP_003564253.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           megaterium QM B1551]
 gi|294350490|gb|ADE70819.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           megaterium QM B1551]
          Length = 193

 Score = 46.5 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I  +I D  +  ++ ++  ++ DD    + + ++SPGGS  AG AI+  +Q ++   
Sbjct: 29  IILIGDEINDHIANSVVAQLLFLAADDPKKDISLYINSPGGSTSAGFAIYDTMQYIEPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L++ A     A   S +     L         ++           
Sbjct: 89  QTICTGMAASFGALLLLAGAKGKRYALPNSEIMIHQPLGGARGQATEIEISARR------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +         ++S     P +K           +  
Sbjct: 143 ------------------------ILKLKQHINEIISTRTGQPVEKVANDTERDYFMSAE 178

Query: 217 EAKKVGLIDVV 227
           EAK+ G+ID +
Sbjct: 179 EAKEYGVIDGI 189


>gi|258511812|ref|YP_003185246.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478538|gb|ACV58857.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 198

 Score = 46.5 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 65/192 (33%), Gaps = 34/192 (17%)

Query: 40  RIAIRGQIEDSQ---ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           RI I G   D Q    ++ ++  ++ DD    + + ++SPGGS  AG AI+  +Q ++  
Sbjct: 29  RIVILGTPIDDQVANSIVAQLLFLAADDPEKDIQMYINSPGGSVTAGMAIYDTMQHIRPA 88

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
              +      +  A  L +       A   + +     L     V+     + +  + + 
Sbjct: 89  VSTLCIGMAASMGAFLLAAGEKGKRYALPNAEIMIHQPLG---GVEGQASDIKIHAEWIL 145

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTG 215
            +  K                             RL+SE    P +            T 
Sbjct: 146 KTKDK---------------------------LNRLLSERTGQPLEVIERDTDRDHFMTA 178

Query: 216 AEAKKVGLIDVV 227
            EAK  GLID V
Sbjct: 179 EEAKAYGLIDEV 190


>gi|254172897|ref|ZP_04879571.1| NfeD protein [Thermococcus sp. AM4]
 gi|214033053|gb|EEB73881.1| NfeD protein [Thermococcus sp. AM4]
          Length = 454

 Score = 46.5 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 83/245 (33%), Gaps = 34/245 (13%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDS 65
           ++TR +    +TL V+ F  +     N   V      G I      +    IE   ++ +
Sbjct: 3   MRTRTLRPLALTLLVLMFLPAVLASPNQKTVYVAKFEGVITSYSVDQFSRYIEIAEKN-N 61

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
           A ALI+ + +PGGS  A + I + I++      +        A++        + ++A  
Sbjct: 62  AEALIIEIDTPGGSGQAMQEIIQRIKESTVPVIIYVYPPGAIAASAGTYIALGSHLIAMA 121

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
            S                 + +    I++   + +K+                       
Sbjct: 122 PSTSIGACEPILGYASNGSIIRAPAKIRNFYIAYIKSLAE-------------------- 161

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
                   +  RN+   +   +++    T  EA K  +I+V+   ++V   L      ++
Sbjct: 162 --------ASGRNVTAAE-KFITEDLSLTPEEALKAHVIEVIA--DDVPDLLKKANGMKT 210

Query: 246 IRKIK 250
              +K
Sbjct: 211 KIPVK 215


>gi|262280902|ref|ZP_06058685.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           calcoaceticus RUH2202]
 gi|299771640|ref|YP_003733666.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           DR1]
 gi|262257802|gb|EEY76537.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           calcoaceticus RUH2202]
 gi|298701728|gb|ADI92293.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           DR1]
          Length = 201

 Score = 46.5 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED+    ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 36  VIFLTGEVEDNMANLIVAQMLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKPDV 95

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L + A       E + V     L  +      ++     I  +  
Sbjct: 96  VTYCMGQAASMGAFLLNAGAKGKRYCLENARVMIHQPLGGFRGQASDIEIHAREILFI-- 153

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            RL++E     Y+            T  
Sbjct: 154 ----------------------------KERLNRLMAEHSGQDYETVARDTDRDNFMTAQ 185

Query: 217 EAKKVGLIDVV 227
            AK+ GL+D V
Sbjct: 186 SAKEYGLVDQV 196


>gi|315604696|ref|ZP_07879759.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315313708|gb|EFU61762.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 204

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 64/198 (32%), Gaps = 33/198 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D  +  +  ++  ++ +D    + + ++SPGGS  AG AI+  +Q VK   
Sbjct: 30  IIWLGGEVRDENANTICAQLLLLAAEDPDRDIYLYINSPGGSVTAGMAIYDTMQYVKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      + +   L + A         + V     L                      
Sbjct: 90  VTVGMGMAASMAQFLLTAGAPGKRYITPHTRVLLHQPLGGAGG----------------- 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                        +   +++  D++         + +       ++     D   W + A
Sbjct: 133 -------------SATEIRINADLILGMKKELASITAARTGKTVEQVEADGDRDHWFSAA 179

Query: 217 EAKKVGLIDVVGGQEEVW 234
           EA + G +D V    +  
Sbjct: 180 EALEYGFVDRVINSPDEI 197


>gi|238018907|ref|ZP_04599333.1| hypothetical protein VEIDISOL_00767 [Veillonella dispar ATCC 17748]
 gi|237864391|gb|EEP65681.1| hypothetical protein VEIDISOL_00767 [Veillonella dispar ATCC 17748]
          Length = 197

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 59/195 (30%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D  +  +I ++  +  +D    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 28  IIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMQYIKPDV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   + V     L         ++           
Sbjct: 88  STICVGSAASMGAVLLTAGAKGKRYALPHARVMIHQPLGGVQGQASEIEIHARE------ 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +         +++       +            +  
Sbjct: 142 ------------------------ILRMREELNGILASRSGQDIEVVARDTDRDNFMSAQ 177

Query: 217 EAKKVGLIDVVGGQE 231
           +A + GLID V  +E
Sbjct: 178 DAVEYGLIDEVLTRE 192


>gi|154500232|ref|ZP_02038270.1| hypothetical protein BACCAP_03896 [Bacteroides capillosus ATCC
           29799]
 gi|150270964|gb|EDM98238.1| hypothetical protein BACCAP_03896 [Bacteroides capillosus ATCC
           29799]
          Length = 245

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 58/198 (29%), Gaps = 25/198 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + ++  +  I        +++ L++ GG   AG  I   I  ++     +      +   
Sbjct: 67  EHVMPLLAAIEESSEVDGVLILLNTVGGDIEAGLGIAELIASMRKPTVSLVLGGGHSIGV 126

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +S  ++ I  +    +  + +      V             +     K         
Sbjct: 127 PLAVSAKTSFIAPSAAMTIHPVRLNGLVIGVPQTFYYFERIQDRIIQFVTKNSHVDRETF 186

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                                     R +     L    G +  G EA K+GLID +GG 
Sbjct: 187 T-------------------------RMMLQTGELAADVGSVIYGEEAVKIGLIDRIGGL 221

Query: 231 EEVWQSLYALGVDQSIRK 248
            +    L+ +  ++  R+
Sbjct: 222 SDALDCLHGMMEEEQQRR 239


>gi|126735733|ref|ZP_01751478.1| Periplasmic serine protease (ClpP class) [Roseobacter sp. CCS2]
 gi|126714920|gb|EBA11786.1| Periplasmic serine protease (ClpP class) [Roseobacter sp. CCS2]
          Length = 301

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 80/221 (36%), Gaps = 18/221 (8%)

Query: 38  VARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           VA + +RG +  +               L + + +++  +   A+++ + +PGG   A E
Sbjct: 55  VAVVPVRGLLTPNSYGLERWLGWTTYHGLADTMGQLAASEEVAAIVLEIDTPGGMVLAIE 114

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV--- 141
           A   AI      KPV   V  MA SAGY ++     I     + +GSIGV          
Sbjct: 115 AAGEAIAATAAVKPVHAVVCPMATSAGYWLASQCTDISMTPGAWIGSIGVQMSTYSPVQP 174

Query: 142 -KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
                       +  ++    A   P + +  + +  ++    ++      +        
Sbjct: 175 GMHGDQWFNFRSQYARAKNPDAATEPGTALIDQRLNALEADFHAAIAAGRGIAPADLPAR 234

Query: 201 YDKTLVLSDGRIWTG-AEAKKVGLIDVVGGQEEVWQSLYAL 240
              T  ++DG    G  EA+  GL D    ++  +  ++  
Sbjct: 235 LSVTDDVADGGAVFGFQEARARGLADAQMTRDVFFADIFDK 275


>gi|323498276|ref|ZP_08103278.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sinaloensis
           DSM 21326]
 gi|323316704|gb|EGA69713.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sinaloensis
           DSM 21326]
          Length = 208

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L  +      +      I ++K 
Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQ 161

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                              L++E    P +               
Sbjct: 162 KLNK------------------------------LLAEHTGQPLEVIERDTDRDNFMAAD 191

Query: 217 EAKKVGLIDVV 227
           +A + GL+D V
Sbjct: 192 QAVEYGLVDAV 202


>gi|223973663|gb|ACN31019.1| unknown [Zea mays]
          Length = 280

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I   G +ED     ++ ++  +   D    +I+ ++SPGGS  AG AIF  ++ ++   
Sbjct: 105 IIRCGGPVEDDMANIIVAQLLYLDAIDPTKDIIMYVNSPGGSVTAGMAIFDTMKHIRPDV 164

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L +       +   S +     L      +  L+     +     
Sbjct: 165 STVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQANEM----- 219

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                              ++     P DK           +  
Sbjct: 220 -------------------------LHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAK 254

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 255 EAKEYGLIDGV 265


>gi|73663232|ref|YP_302013.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|124013830|sp|Q49VZ2|CLPP_STAS1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|72495747|dbj|BAE19068.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 194

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  QI+D  +  ++ ++  +   D+   + + ++SPGGS  AG AI+  IQ +K   
Sbjct: 29  IIMLGSQIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + V     L         ++           
Sbjct: 89  QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +  +     ++++E      +K           +  
Sbjct: 142 -----------------------HILKTRAKLNQILAERTGQSIEKIEQDTDRDNFLSAE 178

Query: 217 EAKKVGLIDVVG 228
           EAK  GL+D V 
Sbjct: 179 EAKDYGLVDQVM 190


>gi|86158227|ref|YP_465012.1| hypothetical protein Adeh_1802 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774738|gb|ABC81575.1| hypothetical protein Adeh_1802 [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 632

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 78/248 (31%), Gaps = 31/248 (12%)

Query: 45  GQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH 104
           G +   ++++ ++ER SRD +  A+++ + S GGS++AG A+  A++ +      +    
Sbjct: 34  GPVLQLRDVLAQLERASRDRAVGAVLLVVDSLGGSSWAGLALCEALRCLSEDGVRVVAHV 93

Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164
              A +   ++     +V A    V                                   
Sbjct: 94  AGTAGSAAAVAILGADVVTAAPGAVIHPH----------------------------GLC 125

Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD--GRIWTGAEAKKVG 222
            P + V P   +   +V+++       L+S       +      D  G     A A  VG
Sbjct: 126 IPAAAVQPGGTRAALEVLEADAWLNAGLLSTRTLGRPEDIACWLDHPGEELAAARAVAVG 185

Query: 223 LIDVVGGQEEVWQSLYAL-GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
             D V   E   +    L        + +     +     +    +   +    +  +  
Sbjct: 186 YADEVRDLEAARELARRLMAAPAQTERARKLEQLQVGEELEDAEAAARDIGAAILSALSC 245

Query: 282 TKVQGLWA 289
             +  L A
Sbjct: 246 GILPELVA 253


>gi|312218146|emb|CBX98092.1| similar to ATP-dependent clp protease proteolytic subunit
           [Leptosphaeria maculans]
          Length = 206

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 63/197 (31%), Gaps = 31/197 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+++D  S   + ++  +  D+    + + ++SPGGS  AG AI+  +  +++  
Sbjct: 30  IICLNGEVDDFMSANCVAQLLFLEADNPEKPISMYINSPGGSVSAGLAIYDTMNYIRSPV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L   A         + V        Y      +      I  ++ 
Sbjct: 90  STICMGIAASMGSLLLAGGAEGHRYILPHARVMIHQPSGGYRGKASDIADHAKEILRIRD 149

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
              K                           +   V++ R    ++     +   +    
Sbjct: 150 KLNK--------------------------IYQSHVTKKR--TLEEIEKYMERDYFMDAQ 181

Query: 217 EAKKVGLIDVVGGQEEV 233
           EA   G++D +  + E 
Sbjct: 182 EAVDFGIVDKILEKREA 198


>gi|332975388|gb|EGK12282.1| ATP-dependent Clp protease, protease subunit [Desmospora sp. 8437]
          Length = 192

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 66/191 (34%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G I+++    ++ ++  ++ DDS   + + + SPGG   AG AI+  ++ ++   
Sbjct: 30  IVFLGGSIDEALAHSIVAQLLFLASDDSDKDIHLYIHSPGGDTTAGWAIYDTMRHIRPDI 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +      +A   + V               ++           
Sbjct: 90  STICIGMAASMGAVLLAAGTPGKRMALPHAEVMIHQPWGGTQGQASDIE----------- 138

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                              +    +  +     +++++    P ++    +D   + T  
Sbjct: 139 -------------------IRTRWMLRTKERINQVLADHTGQPVNRVKKDTDRDYFLTAE 179

Query: 217 EAKKVGLIDVV 227
           EAK  GLID +
Sbjct: 180 EAKTYGLIDRI 190


>gi|209694398|ref|YP_002262326.1| ATP-dependent Clp protease proteolytic subunit [Aliivibrio
           salmonicida LFI1238]
 gi|226706438|sp|B6EHK3|CLPP_ALISL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|208008349|emb|CAQ78503.1| ATP-dependent Clp protease proteolytic subunit [Aliivibrio
           salmonicida LFI1238]
          Length = 207

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 67/196 (34%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L      +     + +  + + +
Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLG---GFQGQASDIQIHAQEILT 158

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
              K                              L++E    P +     +D   +    
Sbjct: 159 IKKK---------------------------LNTLLAEHTGQPLEVIEKDTDRDNFMAAD 191

Query: 217 EAKKVGLIDVVGGQEE 232
           +A K GL+D V  + +
Sbjct: 192 DAVKYGLVDAVLNKRD 207


>gi|188590743|ref|YP_001921998.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum E3 str. Alaska E43]
 gi|251778109|ref|ZP_04821029.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|226706443|sp|B2UX13|CLPP_CLOBA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|188501024|gb|ACD54160.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243082424|gb|EES48314.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 199

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D     ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IIMLSGEVNDDSSNLIVSQLLFLESEDPDKDISIYINSPGGSITAGMAIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S A     A   + +     L  +      +      I  +K 
Sbjct: 89  STICVGMAASMGAFLLSSGAKGKRYALPNAEIMIHQPLGGFQGQATDIQIHANRILKIKE 148

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
           S  K                                SE+ N P +     +      T  
Sbjct: 149 SLNKIL------------------------------SENTNQPLEVIEADVERDNFMTAD 178

Query: 217 EAKKVGLIDVVGG 229
           EAK  GL+D V  
Sbjct: 179 EAKAYGLVDKVIT 191


>gi|224147635|ref|XP_002336515.1| predicted protein [Populus trichocarpa]
 gi|222835812|gb|EEE74247.1| predicted protein [Populus trichocarpa]
          Length = 201

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 63/197 (31%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D     +  ++  +  ++    + + ++SPGG   +G A++  +Q +K+  
Sbjct: 33  VIFLNGEVNDVVSALVCAQLLFLEAENPDKPIHLYINSPGGVITSGLAMYDTMQFIKSPV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +                     +    S+   + +  + P  +  L    + +     
Sbjct: 93  HTLC--------------------MGTARSMGSFLLMAGE-PGHRMALPNASLHVHQPLG 131

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                      +     RL ++     Y++    L   R  T  
Sbjct: 132 GVQGQASDIRIHAEEMLR---------TKDRVTRLYAQHCGRSYEEVERDLDRDRFMTAE 182

Query: 217 EAKKVGLIDVVGGQEEV 233
           EA++ GLID V  +   
Sbjct: 183 EAREWGLIDKVLDRRTA 199


>gi|218290814|ref|ZP_03494883.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218239172|gb|EED06373.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 198

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 65/192 (33%), Gaps = 34/192 (17%)

Query: 40  RIAIRGQIEDSQ---ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           RI I G   D Q    ++ ++  ++ DD    + + ++SPGGS  AG AI+  +Q ++  
Sbjct: 29  RIVILGTPIDDQVANSIVAQLLFLAADDPEKDIQMYINSPGGSVTAGMAIYDTMQHIRPA 88

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
              +      +  A  L +       A   + +     L     V+     + +  + + 
Sbjct: 89  VSTLCIGMAASMGAFLLAAGEKGKRYALPNAEIMIHQPLG---GVEGQASDIKIHAEWIL 145

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTG 215
            +  K                             RL+SE    P +            T 
Sbjct: 146 KTKDK---------------------------LNRLLSERTGQPLEVIERDTDRDHFMTA 178

Query: 216 AEAKKVGLIDVV 227
            EAK  GLID V
Sbjct: 179 EEAKAYGLIDEV 190


>gi|332708809|ref|ZP_08428780.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lyngbya
           majuscula 3L]
 gi|332352351|gb|EGJ31920.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lyngbya
           majuscula 3L]
          Length = 230

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 31/179 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q+V+     I      +  
Sbjct: 66  ADSIVAQLLYLEAEDEEKDIQLYINSPGGSVTAGMAIYDTMQQVRPDVVTICYGLAASMG 125

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L   A+   +A   S +     L         ++                       
Sbjct: 126 AFLLAGGAAGKRMALPNSRIMIHQPLGGAQGQAVDIE----------------------- 162

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                  +    +        +L++     P ++    ++   + + AEAK  GLID V
Sbjct: 163 -------IQAREILYHKQTLNQLLANHTGQPVEQIAEDTERDFFMSAAEAKDYGLIDQV 214


>gi|257899073|ref|ZP_05678726.1| serine protease [Enterococcus faecium Com15]
 gi|257836985|gb|EEV62059.1| serine protease [Enterococcus faecium Com15]
          Length = 241

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 71/207 (34%), Gaps = 37/207 (17%)

Query: 41  IAIRGQIE-----DSQELIERIER-ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           + I G+I      D+       ++ +      + + + ++SPGGS + G AI   +++  
Sbjct: 18  VFIFGEIVSFKWDDTDTTAASFQKDLKELGEVSQINLHINSPGGSVFEGIAIGNMLRQH- 76

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
            +  V+  V  +AAS   +I  + + ++  E S++                        +
Sbjct: 77  -KARVVAHVDALAASIASVIVASCDEVIMPENSMLMIHN------------------PWT 117

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213
           +     K       +++  A                 L      +  +K   + D   W 
Sbjct: 118 ISMGNAKELRKQADDLDKIAE----------SSVVTYLAKAGEKLTEEKIKQIMDEETWM 167

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +  EA   GL DVV    +V  S+   
Sbjct: 168 SAQEAYNYGLCDVVESANQVAASISQK 194


>gi|218709954|ref|YP_002417575.1| hypothetical protein VS_1973 [Vibrio splendidus LGP32]
 gi|218322973|emb|CAV19150.1| hypothetical membrane protein [Vibrio splendidus LGP32]
          Length = 468

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 80/249 (32%), Gaps = 24/249 (9%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIE 58
           M F+LK +    ++              S V   +  V  I + G I    S  L   IE
Sbjct: 1   MTFILKYLFAFLLLF-------------SSVFAQADDVWVIEVNGGIGPATSDYLTREIE 47

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCA 117
           +   D+ A  +I+ +++PGG   +   I R+I          +      AASAG  I  A
Sbjct: 48  QA-HDEQAKLIILKMNTPGGLDSSMRDIIRSITTSPIPVATWVGPAGSRAASAGTYILLA 106

Query: 118 SNIIVAAETS----LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           S++   A  +          V  + P              +  +S   A     S+    
Sbjct: 107 SHVASMAPGTNLGAATPVSLVGGKTPTNPLSPQDEANKDDNTSASEQDATKQENSDQVKA 166

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
              M + V++ +  + V L              + +        A  + +ID +      
Sbjct: 167 TTAMEKKVINDAAAYIVSLAKLHNRNEEWAEKAVREAASLDSENALTLNVIDFIASD--- 223

Query: 234 WQSLYALGV 242
            Q L  L  
Sbjct: 224 LQQLVELSN 232


>gi|312882507|ref|ZP_07742248.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309369907|gb|EFP97418.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 208

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 63/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L      +     + +  + + +
Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLG---GFQGQASDIQIHAQEILT 158

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                              L++E    P D            +  
Sbjct: 159 IKKK---------------------------LNTLLAEHTGQPLDVIERDTDRDNFMSAD 191

Query: 217 EAKKVGLIDVVGG 229
           +A + GL+D +  
Sbjct: 192 QAVEYGLVDSMLT 204


>gi|258646880|ref|ZP_05734349.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dialister
           invisus DSM 15470]
 gi|260404319|gb|EEW97866.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dialister
           invisus DSM 15470]
          Length = 207

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 58/212 (27%), Gaps = 37/212 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G I+D     +I +   +  +D    +   ++SPGG   AG AI+  +Q ++   
Sbjct: 29  IVFLDGPIDDHTANVIIAQFLFLEAEDPDKDIHFYINSPGGVVTAGMAIYDTMQYIRPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L +       A   + V     L                      
Sbjct: 89  STICIGSCASMAAVLLTAGEKGKRYALPHASVMIHQPLGGAQGQ---------------- 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                            + +    +         +++                    T  
Sbjct: 133 --------------ATDIAIHAKEIIRLRSELNGIIAAHSGQTLKTVMKDTERDNFMTAD 178

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
            A K GLID +  + E    L  L     + K
Sbjct: 179 AALKYGLIDKILTRNE----LAELNGKSELSK 206


>gi|153829246|ref|ZP_01981913.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae 623-39]
 gi|148875284|gb|EDL73419.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae 623-39]
          Length = 200

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 34  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 93

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L      +     + +  + + +
Sbjct: 94  STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLG---GFQGQASDIQIHAQEILT 150

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                             RL++E    P +            +  
Sbjct: 151 IKNK---------------------------LNRLLAEHTGQPIEVIERDTDRDNFMSAD 183

Query: 217 EAKKVGLIDVV 227
           +A + GL+D V
Sbjct: 184 QAVEYGLVDAV 194


>gi|313887837|ref|ZP_07821517.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846180|gb|EFR33561.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 194

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D  +  ++ ++  +  +D    + + ++SPGGS  AG AI+  +  +K   
Sbjct: 29  IIFLSGEVNDTMADLIVAQLLFLEAEDPNKDIQLYINSPGGSVSAGFAIYDTMNYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S A     A   S +            +     + ++ + +  
Sbjct: 89  STICIGMAASMGAFLLASGAKGKRFALPNSDIMIHQPSG---GAQGQASDIQINAEKILK 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
              K                                +E      +K    +D   W    
Sbjct: 146 IRHKLNEIL---------------------------AERTGQDLEKIEKDTDRDYWLNSQ 178

Query: 217 EAKKVGLIDVV 227
           EAK  GLID V
Sbjct: 179 EAKDYGLIDKV 189


>gi|241894905|ref|ZP_04782201.1| ATP-dependent Clp protease proteolytic subunit [Weissella
           paramesenteroides ATCC 33313]
 gi|241871913|gb|EER75664.1| ATP-dependent Clp protease proteolytic subunit [Weissella
           paramesenteroides ATCC 33313]
          Length = 242

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 66/207 (31%), Gaps = 45/207 (21%)

Query: 30  HVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPGGSA 80
            ++     VA I I G+I           + +  + ++ +        + +S++SPGGS 
Sbjct: 4   QMKATDNEVAEIHIDGEIVSEKLWDSDVSATDFRDSLKELG---PVKTINMSINSPGGSV 60

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           + G AI+  ++K      V      +AAS   +I+ A + +     S++           
Sbjct: 61  FDGIAIYNMLKKNPATVNVTV--EGLAASIASVIAMAGDTLTMDTGSMLMIHNPFTMAVG 118

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L ++  ++  +                                  V +  E   I 
Sbjct: 119 NASELREMADTLDQI------------------------------RESSVNIYHEKTGID 148

Query: 201 YDKTLVLSDGRIW-TGAEAKKVGLIDV 226
            +    + D   W T  EA   G  D 
Sbjct: 149 KEAIKSVMDNETWLTADEAITAGWADQ 175


>gi|254491593|ref|ZP_05104772.1| Nodulation efficiency protein D [Methylophaga thiooxidans DMS010]
 gi|224463071|gb|EEF79341.1| Nodulation efficiency protein D [Methylophaga thiooxydans DMS010]
          Length = 457

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 70/220 (31%), Gaps = 13/220 (5%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALI 70
           ++ +L +   V     +    +S     I I G I    +      +E+   D +A   +
Sbjct: 4   MLFALFSFVWVCCLPVNIAAADSEQAYIIDIDGIISPATADYFTRSLEKAI-DANAALFL 62

Query: 71  VSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           V L +PGG        I + I         +T     AASAG  +  AS+I      + +
Sbjct: 63  VRLDTPGGLDVSMRGMIKQIIASPVPIVMYVTPGGARAASAGTYLLYASHIAAMTPATNL 122

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           G+   +   P                KS   K               M + VV+ +  + 
Sbjct: 123 GAATPVQLKP---------SFISDEDKSPQEKTNKETEPNTTRSDDAMTRKVVNDAVAYI 173

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
             L              + D    T   A ++ +ID+V  
Sbjct: 174 KGLADLHNRNKDWAEKAVRDAASLTAEAALELKVIDIVAN 213


>gi|195640846|gb|ACG39891.1| ATP-dependent Clp protease proteolytic subunit 1 [Zea mays]
          Length = 281

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I   G +ED     ++ ++  +   D    +I+ ++SPGGS  AG AIF  ++ ++   
Sbjct: 106 IIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTMKHIRPDV 165

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L +       +   S +     L      +  L+     +     
Sbjct: 166 STVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQANEM----- 220

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                              ++     P DK           +  
Sbjct: 221 -------------------------LHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAK 255

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 256 EAKEYGLIDGV 266


>gi|148543625|ref|YP_001270995.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri DSM 20016]
 gi|184153034|ref|YP_001841375.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri JCM 1112]
 gi|194468177|ref|ZP_03074163.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           reuteri 100-23]
 gi|227363410|ref|ZP_03847534.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri MM2-3]
 gi|227545094|ref|ZP_03975143.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri CF48-3A]
 gi|300909236|ref|ZP_07126697.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri SD2112]
 gi|325681981|ref|ZP_08161499.1| ATP-dependent Clp protease, protease subunit [Lactobacillus reuteri
           MM4-1A]
 gi|167008650|sp|A5VII4|CLPP_LACRD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706458|sp|B2G613|CLPP_LACRJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|148530659|gb|ABQ82658.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lactobacillus
           reuteri DSM 20016]
 gi|183224378|dbj|BAG24895.1| endopeptidase Clp proteolytic subunit [Lactobacillus reuteri JCM
           1112]
 gi|194453030|gb|EDX41928.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           reuteri 100-23]
 gi|227071510|gb|EEI09809.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri MM2-3]
 gi|227184943|gb|EEI65014.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri CF48-3A]
 gi|300893101|gb|EFK86460.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri SD2112]
 gi|324978625|gb|EGC15574.1| ATP-dependent Clp protease, protease subunit [Lactobacillus reuteri
           MM4-1A]
          Length = 197

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 60/192 (31%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IED  +  ++ ++  +   DS   + + ++SPGG   +G AI+  +  +K   
Sbjct: 29  IIMLSGPIEDEMANSIVAQLLFLDAQDSTKDIYLYINSPGGVVTSGMAIYDTMNFIKADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++  + S A         S V            +  ++           
Sbjct: 89  QTIVIGMAASMASVLVSSGAKGKRFGLPHSQVLIHQPSGGAQGQQTEIEIAATE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +  +      +++++   P +K           T  
Sbjct: 143 ------------------------ILKTRKMLNGILAKNSGQPIEKIQADTERDHYLTAQ 178

Query: 217 EAKKVGLIDVVG 228
           EA   GL+D V 
Sbjct: 179 EAVDYGLLDGVM 190


>gi|255321158|ref|ZP_05362324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           radioresistens SK82]
 gi|262380154|ref|ZP_06073309.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           radioresistens SH164]
 gi|255301712|gb|EET80963.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           radioresistens SK82]
 gi|262298348|gb|EEY86262.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           radioresistens SH164]
          Length = 201

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED+    ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 36  VIFLTGEVEDNMANLIVAQMLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKPDV 95

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L + A       E + V     L  +      ++     I  +  
Sbjct: 96  VTYCMGQAASMGAFLLNAGAKGKRFCLENARVMIHQPLGGFRGQASDIEIHAREILFI-- 153

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            RL++E     Y++           T  
Sbjct: 154 ----------------------------KERLNRLMAEHSGQDYERIARDTDRDNFMTAQ 185

Query: 217 EAKKVGLIDVV 227
            AK+ GL+D V
Sbjct: 186 AAKEYGLVDEV 196


>gi|332992307|gb|AEF02362.1| ATP-dependent Clp protease proteolytic subunit [Alteromonas sp.
           SN2]
          Length = 209

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG AI+  +  +K   
Sbjct: 38  VIFLVGQVEDHMANLIVAQMLFLEAENPEKDIFLYINSPGGSVTAGMAIYDTMNFIKPDV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L  +       +     I S+  
Sbjct: 98  STVCVGQAASMGAFLLSGGAKGKRYCLPNSRVMIHQPLGGFQGQASDFEIHAKEILSI-- 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            RL+++     Y+K           +  
Sbjct: 156 ----------------------------KEKLNRLMAQHTGQDYEKVAHDTDRDNFLSAT 187

Query: 217 EAKKVGLIDVVGG 229
           EAK+ GLID V  
Sbjct: 188 EAKEYGLIDQVMT 200


>gi|213521159|gb|ACJ50516.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           fluorescens]
          Length = 211

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 60/197 (30%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     +  ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 45  VIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L + A         S V     L  +      ++     I  +  
Sbjct: 105 STTCIGQACSMGAFLLTAGAEGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFI-- 162

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L+++      ++     +     +  
Sbjct: 163 ----------------------------RERLNTLMAKHSGRTLEEIERDTNRDNFMSAE 194

Query: 217 EAKKVGLIDVVGGQEEV 233
            AK+ GLID V  +   
Sbjct: 195 AAKEYGLIDAVIDKRPA 211


>gi|282900572|ref|ZP_06308514.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
 gi|281194372|gb|EFA69327.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
          Length = 194

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 31/179 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  ++  +  +  DD    + + ++SPGGS  AG AI+  IQ +K+    I      +  
Sbjct: 44  ANAIVAYLLYLDSDDQTKPIYLYINSPGGSVTAGMAIYDTIQYIKSEVVTICVGLAASMG 103

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           +  L + A    +A   S +               ++     I  ++             
Sbjct: 104 SFLLAAGAKGKRLALPHSRIMIHQPSGGTRGQASDIEIEAREILRIRH------------ 151

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                                ++ +++      K     D   + +  EAK+ GLID V
Sbjct: 152 ------------------QLNQIYADNTGQVLSKIEKDMDRDFFMSAQEAKEYGLIDRV 192


>gi|56460113|ref|YP_155394.1| ATP-dependent Clp protease proteolytic subunit [Idiomarina
           loihiensis L2TR]
 gi|67460202|sp|Q5QXN8|CLPP_IDILO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56179123|gb|AAV81845.1| Protease subunit of ATP-dependent Clp protease [Idiomarina
           loihiensis L2TR]
          Length = 206

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 53/176 (30%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  D+    + + ++SPGG   AG AI+  ++ +K     +      +  A  
Sbjct: 53  IVAQLLFLESDNPDKDIYLYINSPGGVVTAGMAIYDTMRFIKPDVSTVCMGQAASMGAFL 112

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L   A         S V     L  +       +                          
Sbjct: 113 LAGGAQGKRYCLPNSRVMIHQPLGGFQGQASDFE-------------------------- 146

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227
               +    +        R+++E+    Y+K           +  E+   GL+D +
Sbjct: 147 ----IHAKQILDLKERLNRMLAENTGQDYEKVARDTDRDHFLSAEESIDYGLVDGI 198


>gi|260887080|ref|ZP_05898343.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
           sputigena ATCC 35185]
 gi|330839143|ref|YP_004413723.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
           sputigena ATCC 35185]
 gi|260863142|gb|EEX77642.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
           sputigena ATCC 35185]
 gi|329746907|gb|AEC00264.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
           sputigena ATCC 35185]
          Length = 206

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 63/194 (32%), Gaps = 33/194 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G I+D+    ++ ++  +  +D    + + ++SPGG   AG AI+  +Q ++   
Sbjct: 34  IVFVGGPIDDNVANVVVAQLLFLESEDPDKDIHLYINSPGGVVTAGLAIYDTMQYIRPDV 93

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + +     L                      
Sbjct: 94  STICIGQAASMGSLLLTAGAKGKRYALPLARIMIHQPLGGAQGQST-------------- 139

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216
                            +Q+    +         ++++    P +K           T  
Sbjct: 140 ----------------DIQIQAKEILRLREVGNDILAKHTGQPREKLIADTERDNFMTAE 183

Query: 217 EAKKVGLIDVVGGQ 230
           EAK+ GLID V  +
Sbjct: 184 EAKEYGLIDEVITR 197


>gi|239995517|ref|ZP_04716041.1| ATP-dependent Clp protease proteolytic subunit [Alteromonas
           macleodii ATCC 27126]
          Length = 209

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 68/200 (34%), Gaps = 34/200 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG AI+  ++ +K   
Sbjct: 38  VIFLVGQVEDHMANLIVAQMLFLEAENPEKDIFLYINSPGGSVTAGMAIYDTMKFIKPDV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A         S V     L  +       +     I S+  
Sbjct: 98  STVCMGQAASMGAFLLSAGAKGKRYCLPNSRVMIHQPLGGFQGQASDFEIHAKEILSI-- 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            RL+++     Y+K           +  
Sbjct: 156 ----------------------------KEKLNRLMADHTGQDYEKVARDTDRDNFLSAT 187

Query: 217 EAKKVGLIDV-VGGQEEVWQ 235
           EAK+ GL+D  +  + +V  
Sbjct: 188 EAKEYGLVDQVLANRSDVAA 207


>gi|295705906|ref|YP_003598981.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           megaterium DSM 319]
 gi|294803565|gb|ADF40631.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           megaterium DSM 319]
          Length = 193

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I  +I D  +  ++ ++  ++ DD    + + ++SPGGS  AG AI+  +Q ++   
Sbjct: 29  IILIGDEINDHIANSVVAQLLFLAADDPKKDISLYINSPGGSTSAGFAIYDTMQYIEPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L++ A     A   S V     L         ++           
Sbjct: 89  QTICTGMAASFGALLLLAGAKGKRYALPNSEVMIHQPLGGARGQATEIEISARR------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +         ++S     P +K           +  
Sbjct: 143 ------------------------ILKLKQHINEIISTRTGQPVEKVANDTERDYFMSAE 178

Query: 217 EAKKVGLIDVV 227
           EAK  G+ID +
Sbjct: 179 EAKTYGIIDGI 189


>gi|240103959|ref|YP_002960268.1| Membrane bound protease, putative, nfeD/ClpP- family (nfeD)
           [Thermococcus gammatolerans EJ3]
 gi|239911513|gb|ACS34404.1| Membrane bound protease, putative, nfeD/ClpP- family (nfeD)
           [Thermococcus gammatolerans EJ3]
          Length = 454

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 72/190 (37%), Gaps = 10/190 (5%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSA 66
           ++ +++L L+ L  V  S       N   V      G I      +    IE   ++ +A
Sbjct: 10  RSAFIILVLMLLPAVLASP------NQKTVYVAKFEGVITSYSVDQFSRYIEIAEKN-NA 62

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAE 125
            ALI+ + +PGGS  A + I + I++ K    +       +AASAG  I+  S++I  A 
Sbjct: 63  EALIIEIDTPGGSGQAMQEIIQRIKESKVPVIIYVYPPGAIAASAGTYIALGSHLIAMAP 122

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
           ++ +G+   +  Y      +           +       +    V      + +D+  + 
Sbjct: 123 STSIGACEPIMGYASNGSIIKAPAKVRNFYVAYIKSLAEASGRNVTAAERFITEDLSLTP 182

Query: 186 YHWFVRLVSE 195
                  V E
Sbjct: 183 EEALRAHVIE 192


>gi|121727845|ref|ZP_01680912.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae V52]
 gi|229507982|ref|ZP_04397487.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae BX
           330286]
 gi|229511781|ref|ZP_04401260.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           B33]
 gi|229515308|ref|ZP_04404768.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae TMA
           21]
 gi|229518918|ref|ZP_04408361.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           RC9]
 gi|229523942|ref|ZP_04413347.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae bv.
           albensis VL426]
 gi|229529052|ref|ZP_04418442.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           12129(1)]
 gi|229607528|ref|YP_002878176.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           MJ-1236]
 gi|254849010|ref|ZP_05238360.1| ATP-dependent Clp protease [Vibrio cholerae MO10]
 gi|255745319|ref|ZP_05419268.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholera CIRS
           101]
 gi|262156043|ref|ZP_06029163.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           INDRE 91/1]
 gi|262167884|ref|ZP_06035584.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           RC27]
 gi|297579440|ref|ZP_06941368.1| ATP-dependent Clp protease [Vibrio cholerae RC385]
 gi|298498040|ref|ZP_07007847.1| clp protease [Vibrio cholerae MAK 757]
 gi|121629881|gb|EAX62295.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae V52]
 gi|229332826|gb|EEN98312.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           12129(1)]
 gi|229337523|gb|EEO02540.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae bv.
           albensis VL426]
 gi|229343607|gb|EEO08582.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           RC9]
 gi|229348013|gb|EEO12972.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae TMA
           21]
 gi|229351746|gb|EEO16687.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           B33]
 gi|229355487|gb|EEO20408.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae BX
           330286]
 gi|229370183|gb|ACQ60606.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           MJ-1236]
 gi|254844715|gb|EET23129.1| ATP-dependent Clp protease [Vibrio cholerae MO10]
 gi|255737149|gb|EET92545.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholera CIRS
           101]
 gi|262023611|gb|EEY42312.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           RC27]
 gi|262030221|gb|EEY48865.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           INDRE 91/1]
 gi|297537034|gb|EFH75867.1| ATP-dependent Clp protease [Vibrio cholerae RC385]
 gi|297542373|gb|EFH78423.1| clp protease [Vibrio cholerae MAK 757]
 gi|327484465|gb|AEA78872.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           LMA3894-4]
          Length = 208

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L      +     + +  + + +
Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLG---GFQGQASDIQIHAQEILT 158

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                             RL++E    P +            +  
Sbjct: 159 IKNK---------------------------LNRLLAEHTGQPIEVIERDTDRDNFMSAD 191

Query: 217 EAKKVGLIDVV 227
           +A + GL+D V
Sbjct: 192 QAVEYGLVDAV 202


>gi|15641924|ref|NP_231556.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|147674197|ref|YP_001217455.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           O395]
 gi|153824129|ref|ZP_01976796.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae B33]
 gi|153826398|ref|ZP_01979065.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae MZO-2]
 gi|227082052|ref|YP_002810603.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae M66-2]
 gi|254286858|ref|ZP_04961810.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae AM-19226]
 gi|18203199|sp|Q9KQS6|CLPP_VIBCH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|172047646|sp|A5F6X0|CLPP_VIBC3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763808|sp|C3LNM6|CLPP_VIBCM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|9656458|gb|AAF95070.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126518348|gb|EAZ75571.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae B33]
 gi|146316080|gb|ABQ20619.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae O395]
 gi|149739876|gb|EDM54067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae MZO-2]
 gi|150423008|gb|EDN14957.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae AM-19226]
 gi|227009940|gb|ACP06152.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae M66-2]
 gi|227013820|gb|ACP10030.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae O395]
          Length = 200

 Score = 46.1 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 34  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 93

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L      +     + +  + + +
Sbjct: 94  STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLG---GFQGQASDIQIHAQEILT 150

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                             RL++E    P +            +  
Sbjct: 151 IKNK---------------------------LNRLLAEHTGQPIEVIERDTDRDNFMSAD 183

Query: 217 EAKKVGLIDVV 227
           +A + GL+D V
Sbjct: 184 QAVEYGLVDAV 194


>gi|325474230|gb|EGC77418.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
           denticola F0402]
          Length = 197

 Score = 46.1 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 62/195 (31%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I    +  ++ ++  +   +    + + ++SPGGS  AG AI+  +Q ++   
Sbjct: 30  IIFVDGEINDMSADLVVAQLLFLEAQNPDKDISLYINSPGGSVTAGLAIYDTMQHIRPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A N   A  +S V               ++     I  +K 
Sbjct: 90  QTICLGQCASMGAVLLAGGAKNKRYALPSSRVMIHQPWGGVQGQAVDINIQAKEIVRLKK 149

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
             +K                                +E+      +     +   + +  
Sbjct: 150 LTIKYF------------------------------AENTGKTEKQVAADMERDFFMSAE 179

Query: 217 EAKKVGLIDVVGGQE 231
           EA   G+ID V  + 
Sbjct: 180 EALAYGIIDTVMNRR 194


>gi|262373455|ref|ZP_06066733.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           junii SH205]
 gi|262311208|gb|EEY92294.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           junii SH205]
          Length = 201

 Score = 46.1 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED+    ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 36  VIFLTGEVEDNMANLIVAQMLFLEAENPEKDIHLYINSPGGSVTAGMAIYDTMQFIKPDV 95

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L + A       E + V     L  +      ++     I  +  
Sbjct: 96  VTYCMGQAASMGAFLLNAGAKGKRYCLENARVMIHQPLGGFRGQASDIEIHAREILFI-- 153

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            RL+++     Y+            T  
Sbjct: 154 ----------------------------KERLNRLMAQHSGQDYETVARDTDRDNFMTAE 185

Query: 217 EAKKVGLIDVV 227
            AK+ GL+D V
Sbjct: 186 AAKQYGLVDQV 196


>gi|226311643|ref|YP_002771537.1| hypothetical protein BBR47_20560 [Brevibacillus brevis NBRC 100599]
 gi|226094591|dbj|BAH43033.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
           100599]
          Length = 447

 Score = 46.1 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 90/253 (35%), Gaps = 28/253 (11%)

Query: 2   EFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERI 60
             V  +++  + +L L+    + F+ +S           I +   IE   +  + R    
Sbjct: 5   RLVKSRVRLLFSLLCLIMGMTMLFAPASTTAKTYQKAVWIPVDSTIERGLESFLHRAFAD 64

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
           ++   A  +I+ +++PGG   A + I + I++      VI  +   A SAG  I+  +N 
Sbjct: 65  AQQQQADLVILHINTPGGEVNAADQIGQLIRQAP--MHVIAYIDNQAFSAGTYIALNANE 122

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
           I+    S +G+   +          +   +   S  S+ MKA     +     A  M++ 
Sbjct: 123 IIMTPGSSMGAATPI------DLAGNAADIKFISGWSNKMKAAAELNNRNPDVARAMVEI 176

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
             +         V                       +AK++G  D V   +E  + L  L
Sbjct: 177 DTEFPGLKPKGTVLS-----------------LDAQQAKRLGYADDVVSNKE--ELLKKL 217

Query: 241 GVDQSIRKIKDWN 253
           G+     +  +  
Sbjct: 218 GIQPDSLQAIEPT 230


>gi|262198158|ref|YP_003269367.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haliangium
           ochraceum DSM 14365]
 gi|262081505|gb|ACY17474.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haliangium
           ochraceum DSM 14365]
          Length = 207

 Score = 45.8 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 57/176 (32%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +I ++  +  +D    +++ ++SPGGS  AG AI+  +Q ++     I      +  A  
Sbjct: 52  IIAQLLHLESEDPEKDIMLYINSPGGSVTAGLAIYDTMQYLRCDVATICMGQASSMGAFL 111

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     A   + V     L  +      +D     +                    
Sbjct: 112 LAAGAKGKRFALPHARVMIHQPLGGFSGPATDIDIYAREV-------------------- 151

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227
                       +     R+++E    P D+           +  EA   GLID V
Sbjct: 152 ----------LKTRETLNRVLAEHTGQPLDRIAEDTERDYFMSADEACAYGLIDEV 197


>gi|52786465|ref|YP_092294.1| YqeZ [Bacillus licheniformis ATCC 14580]
 gi|163119554|ref|YP_079877.2| intermembrane protease YqeZ [Bacillus licheniformis ATCC 14580]
 gi|52348967|gb|AAU41601.1| YqeZ [Bacillus licheniformis ATCC 14580]
 gi|145903062|gb|AAU24239.2| intermembrane protease YqeZ [Bacillus licheniformis ATCC 14580]
          Length = 439

 Score = 45.8 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 4/133 (3%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISR 62
           +LKK +  +V L+   +  +       V+ +   V  I I   +E    + +ER  + + 
Sbjct: 2   LLKKFR-IFVALACGFVLFLLLGVHLTVKADGDTVYVIPIEETVEKGLSKFLERSFQEAE 60

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           D  A  +I+ +++PGG+  A   +   I    +  PV   V+  A SAG  ++  ++ I 
Sbjct: 61  DMYAKHIILDINTPGGAVDAVLDMADTI--HNSDIPVTAYVNRRALSAGAYLALNADDIY 118

Query: 123 AAETSLVGSIGVL 135
            A    +G+  ++
Sbjct: 119 MAPGGKMGAAAII 131


>gi|169634426|ref|YP_001708162.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii SDF]
 gi|169797267|ref|YP_001715060.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii AYE]
 gi|184156807|ref|YP_001845146.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii ACICU]
 gi|213155939|ref|YP_002317984.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           baumannii AB0057]
 gi|215484708|ref|YP_002326943.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           baumannii AB307-0294]
 gi|239500790|ref|ZP_04660100.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           baumannii AB900]
 gi|260549098|ref|ZP_05823319.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           RUH2624]
 gi|260556149|ref|ZP_05828368.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           baumannii ATCC 19606]
 gi|301346762|ref|ZP_07227503.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii AB056]
 gi|301512252|ref|ZP_07237489.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii AB058]
 gi|301594241|ref|ZP_07239249.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii AB059]
 gi|332851226|ref|ZP_08433299.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Acinetobacter baumannii 6013150]
 gi|332866080|ref|ZP_08436808.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Acinetobacter baumannii 6013113]
 gi|332873220|ref|ZP_08441177.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Acinetobacter baumannii 6014059]
 gi|169150194|emb|CAM88088.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           (Caseinolytic protease) (Protease Ti) (Heat shock
           protein F21.5) [Acinetobacter baumannii AYE]
 gi|169153218|emb|CAP02314.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           (Caseinolytic protease) (Protease Ti) (Heat shock
           protein F21.5) [Acinetobacter baumannii]
 gi|183208401|gb|ACC55799.1| Protease subunit of ATP-dependent Clp protease [Acinetobacter
           baumannii ACICU]
 gi|193076289|gb|ABO10931.2| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii ATCC 17978]
 gi|213055099|gb|ACJ40001.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           baumannii AB0057]
 gi|213988734|gb|ACJ59033.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           baumannii AB307-0294]
 gi|260407826|gb|EEX01298.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           RUH2624]
 gi|260410204|gb|EEX03503.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           baumannii ATCC 19606]
 gi|322506699|gb|ADX02153.1| clpP [Acinetobacter baumannii 1656-2]
 gi|323516573|gb|ADX90954.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332730106|gb|EGJ61433.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Acinetobacter baumannii 6013150]
 gi|332734826|gb|EGJ65919.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Acinetobacter baumannii 6013113]
 gi|332738732|gb|EGJ69602.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Acinetobacter baumannii 6014059]
          Length = 201

 Score = 45.8 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED+    ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 36  VIFLTGEVEDNMANLIVAQMLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKPDV 95

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L + A       E + V     L  +      ++     I  +  
Sbjct: 96  VTYCMGQAASMGAFLLNAGAKGKRYCLENARVMIHQPLGGFRGQASDIEIHAREILFI-- 153

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            RL++E     YD            T  
Sbjct: 154 ----------------------------KERLNRLMAEHSGQDYDTIARDTDRDNFMTAQ 185

Query: 217 EAKKVGLIDVV 227
            AK+ GL+D V
Sbjct: 186 AAKEYGLVDQV 196


>gi|326505348|dbj|BAK03061.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 284

 Score = 45.8 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I   G +ED     ++ ++  +   D    +I+ ++SPGGS  AG AIF  ++ ++   
Sbjct: 109 IIRCGGPVEDDMANVIVAQLLYLDAVDPNKDIIMYVNSPGGSVTAGMAIFDTMKHIRPDV 168

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L         +   S +     L      +  L+     +     
Sbjct: 169 STVCIGLAASMGAFLLSGGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQANEM----- 223

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                              ++     P DK  V +D   + +  
Sbjct: 224 -------------------------LHHKANLNGYLAYHTGQPLDKINVDTDRDFFMSAK 258

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 259 EAKEYGLIDGV 269


>gi|114778396|ref|ZP_01453243.1| probable transmembrane protein [Mariprofundus ferrooxydans PV-1]
 gi|114551359|gb|EAU53916.1| probable transmembrane protein [Mariprofundus ferrooxydans PV-1]
          Length = 454

 Score = 45.8 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 90/246 (36%), Gaps = 23/246 (9%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDS 65
           + TR +ML  ++L        +      PH   + I+G I  +  +++   + +      
Sbjct: 3   VFTRILMLLCISLIA-----HTSPAQAVPHALVLDIQGAIGPAVAEDVHNTLAQAGD--- 54

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAA 124
           A  +I+ + +PGG   +   I + I          +      AASAG  I  AS+I   +
Sbjct: 55  AGLVILRMDTPGGLDQSMRKIIQDILASPVPVATFVAPQGARAASAGTYILYASHIAAMS 114

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             + +G+   +      KP           +  SP     SP +          + V D+
Sbjct: 115 PATNLGAATPVQIGALPKP----------DIPRSPSVKGSSPETPEESGNPMQHKMVNDA 164

Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVD 243
           + +         RN+ + +   +      +  +A K+G+ID++     ++ + +    V 
Sbjct: 165 TAYIRSLAQLRHRNVEWAEL-AVRKAASLSADQALKMGVIDLIAQDIPQLLKKVDGRTVS 223

Query: 244 QSIRKI 249
                +
Sbjct: 224 TGNASV 229


>gi|261209157|ref|ZP_05923553.1| serine protease [Enterococcus faecium TC 6]
 gi|289566715|ref|ZP_06447130.1| serine protease [Enterococcus faecium D344SRF]
 gi|260076870|gb|EEW64601.1| serine protease [Enterococcus faecium TC 6]
 gi|289161485|gb|EFD09370.1| serine protease [Enterococcus faecium D344SRF]
          Length = 241

 Score = 45.8 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 71/207 (34%), Gaps = 37/207 (17%)

Query: 41  IAIRGQIE-----DSQELIERIER-ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           + I G+I      D+       ++ +      + + + ++SPGGS + G AI   +++  
Sbjct: 18  VFIFGEIVSFKWDDTDTTAASFQKDLKELGEVSQINLHINSPGGSVFEGIAIGNMLRQH- 76

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
            +  V+  V  +AAS   +I  + + ++  E S++                        +
Sbjct: 77  -KARVVAHVDALAASIASVIVASCDEVIMPENSMLMIHN------------------PWT 117

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213
           +     K       +++  A                 L      +  +K   + D   W 
Sbjct: 118 ISMGNAKELRKQADDLDKIAE----------SSVVTYLAKAGEKLTEEKIKQIMDEETWM 167

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +  EA   GL DVV    +V  S+   
Sbjct: 168 SAQEAYNYGLCDVVESANQVAASISQK 194


>gi|218897608|ref|YP_002446019.1| phage protein [Bacillus cereus G9842]
 gi|218544209|gb|ACK96603.1| phage protein [Bacillus cereus G9842]
          Length = 260

 Score = 45.8 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 66/204 (32%), Gaps = 45/204 (22%)

Query: 41  IAIRGQIEDSQELI------------ERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           I ++G I  + E+              +I +   D +   L+VS++SPGG  + G  I+ 
Sbjct: 5   IDVKGPIISNDEVWIYDWFEMDAASPGKISKALEDANGDDLVVSINSPGGYVHEGSEIYT 64

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
           A++       V      +AASA  +I+ A++ +  + T+ +                   
Sbjct: 65  ALKNYPGHVEVQIVG--LAASAASVIAMAADKVRISPTAQIMIHNASM------------ 110

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
                       +        +      ++   V  S                ++ L + 
Sbjct: 111 ------WNGGDHRDMSKAAEMLKTTDRAIVNAYVIKS------------GKSEEELLNMM 152

Query: 209 DGRIWTG-AEAKKVGLIDVVGGQE 231
               W G  +A +   +D +   +
Sbjct: 153 AEETWMGPQQALENNFVDEIMFMD 176


>gi|259502747|ref|ZP_05745649.1| ATP-dependent Clp protease [Lactobacillus antri DSM 16041]
 gi|312870316|ref|ZP_07730444.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus oris PB013-T2-3]
 gi|259169392|gb|EEW53887.1| ATP-dependent Clp protease [Lactobacillus antri DSM 16041]
 gi|311094200|gb|EFQ52516.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus oris PB013-T2-3]
          Length = 197

 Score = 45.8 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 55/191 (28%), Gaps = 31/191 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IED  +  ++ ++  +   DS   + + ++SPGG   +G AI+  +  +K+  
Sbjct: 29  IIMLSGPIEDEMANSIVAQLLFLDAQDSTKDIYLYINSPGGVVTSGMAIYDTMNFIKSDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++  + S           S V                            
Sbjct: 89  QTIVIGMAASMASVLVSSGTKGKRFGLPHSQVLIHQPSG--------------------- 127

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                +                     + +    +   +R+   D           T  E
Sbjct: 128 GAQGQQTEIEIAATEILKTRKMINEILAKNSGQPIEKINRDTERD--------HYLTAQE 179

Query: 218 AKKVGLIDVVG 228
           A   GL+D + 
Sbjct: 180 AVDYGLLDGIM 190


>gi|296423577|ref|XP_002841330.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637567|emb|CAZ85521.1| unnamed protein product [Tuber melanosporum]
          Length = 242

 Score = 45.8 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 61/191 (31%), Gaps = 31/191 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++    + + ++SPGGS  AG AI+  +  ++   
Sbjct: 67  IICLNGPVHDGISAVVVAQLLFLEAENPEKQINLYINSPGGSVTAGLAIYDTMNYIQAPV 126

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L         A   +   S+ V      +      + +  K +  
Sbjct: 127 STICIGQAASMGSLLLCGGTKGKRYALPHA---SVMVHQPSILMTKGNSDIAIHAKEILR 183

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
              +        +                                +   + +  ++ G  
Sbjct: 184 VRERLNIIYQKHLTKP-------------------------HTLAQIEKIMERDLFMGAE 218

Query: 217 EAKKVGLIDVV 227
           EAK++GL+D +
Sbjct: 219 EAKEMGLVDEI 229


>gi|289422712|ref|ZP_06424552.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Peptostreptococcus anaerobius 653-L]
 gi|289156891|gb|EFD05516.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Peptostreptococcus anaerobius 653-L]
          Length = 194

 Score = 45.8 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 54/176 (30%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  DD    + + ++SPGGS  AG AI+  +Q +K     I      +  A  
Sbjct: 44  VVAQMLFLEADDPDKDIHLYINSPGGSVTAGMAIYDTMQYIKADVSTICVGMAASMGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     A   S V     L         ++     + S+K    K           
Sbjct: 104 LAAGAKGKRYALPNSTVMIHQPLGGTRGQATDIEIHTKYLLSIKEKLNKIL--------- 154

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVV 227
                                +E      +            T  EA+  GLID V
Sbjct: 155 ---------------------AERTGQDLETVKANTERDNFMTADEARDFGLIDEV 189


>gi|219870832|ref|YP_002475207.1| Clp protease-like protein [Haemophilus parasuis SH0165]
 gi|219691036|gb|ACL32259.1| Clp protease-like protein [Haemophilus parasuis SH0165]
          Length = 655

 Score = 45.8 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 61/204 (29%), Gaps = 40/204 (19%)

Query: 39  ARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           A I+I  +I      +Q+  + ++ +        + + + SPGGS + G AI+  ++   
Sbjct: 14  AEISIMDEIGGWGISAQQFAKDLKNLGD---IKHIDLHIHSPGGSVFDGIAIYNLLKNHP 70

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
             K V  +                        S+   I +L     +      +      
Sbjct: 71  ASKTVYID--------------------GLAASMASVIAMLGDPVIMPKNAMMMIHKPWG 110

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213
           ++S   +        ++               +  +   +E      ++   +     W 
Sbjct: 111 IQSGDAEDMRKYADLLDKIE------------NTTIPAYAEKTGKSPEELAEMLKEETWL 158

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSL 237
           T  E  + G  D +    +   S+
Sbjct: 159 TAEECVEQGFADKLAEPIKAMASI 182


>gi|262369923|ref|ZP_06063250.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           johnsonii SH046]
 gi|262314962|gb|EEY96002.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           johnsonii SH046]
          Length = 201

 Score = 45.8 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED+    ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 36  VIFMTGEVEDNMANLIVAQMLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKPDV 95

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L S A       E + V     L  +      ++     I  +  
Sbjct: 96  VTYCMGQAASMGAFLLNSGAKGKRYCLENARVMIHQPLGGFRGQASDIEIHAREILFI-- 153

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            RL++E     Y+            T  
Sbjct: 154 ----------------------------KERLNRLMAEHSGQDYETVARDTDRDNFMTAQ 185

Query: 217 EAKKVGLIDVV 227
            AK+ GL+D V
Sbjct: 186 AAKEYGLVDEV 196


>gi|332669945|ref|YP_004452953.1| endopeptidase Clp [Cellulomonas fimi ATCC 484]
 gi|332338983|gb|AEE45566.1| Endopeptidase Clp [Cellulomonas fimi ATCC 484]
          Length = 233

 Score = 45.8 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 66/180 (36%), Gaps = 27/180 (15%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    + + ++SPGGS  A  AI+  +Q +K     +      +
Sbjct: 66  ASADDVMAQLLVLESTDPDRDITLYINSPGGSFTALTAIYDTMQYIKPELVTVCLGQAAS 125

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L + + N  +A   + V       +        D    + + ++           
Sbjct: 126 AAAVLLAAGSPNKRLALPNARVLIHQPAMEGGGYAQASDIEIHANELIRM---------- 175

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
                   + +++ +       + LV +           +   +I T  +AK+ G++D V
Sbjct: 176 -------REWLEETLAHHTGRDLGLVRK----------DIERDKILTAQQAKEYGIVDQV 218


>gi|315634780|ref|ZP_07890062.1| ATP-dependent Clp protease proteolytic subunit [Aggregatibacter
           segnis ATCC 33393]
 gi|315476332|gb|EFU67082.1| ATP-dependent Clp protease proteolytic subunit [Aggregatibacter
           segnis ATCC 33393]
          Length = 193

 Score = 45.8 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED+    ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  VIFLSGEVEDNMANLIVAQLLFLESEDPDKDINLYINSPGGSVTAGMAIYDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A     A   + V     L  +                   
Sbjct: 89  RTLCVGQACSMGAFLLAGGAPGKRGALPHARVMIHQPLGGFRGQ---------------- 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            +Q+    +          ++     P +     +D   + +  
Sbjct: 133 --------------ASDIQIHAQEILKIKGTLNERLAFHTGQPIETIEKDTDRDNFMSAE 178

Query: 217 EAKKVGLIDVV 227
           EAK  GLID V
Sbjct: 179 EAKNYGLIDEV 189


>gi|194476907|ref|YP_002049086.1| Clp protease proteolytic subunit [Paulinella chromatophora]
 gi|171191914|gb|ACB42876.1| Clp protease proteolytic subunit [Paulinella chromatophora]
          Length = 225

 Score = 45.8 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 66/207 (31%), Gaps = 31/207 (14%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           S  ++    +  I+     ED+ ++I ++  +  ++    + V ++  GGS Y    I+ 
Sbjct: 49  SIPKNTEDRIILISEEMNDEDASDIIAQLLMLEAENPDEDIQVYINCMGGSMYGFVGIYD 108

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
            +Q +K     +        S   L   A    +A   + +                   
Sbjct: 109 TMQAIKPDVVTLCYGSAFEMSGFLLSGGAKGKRLALPNARIMLNQ--------------- 153

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVL 207
               ++     +        E+                     L++      ++K     
Sbjct: 154 ---PETSFYGCITDLQLYNKEL------------MLMRKNICSLIAAHTGQRFEKVTADT 198

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVW 234
           +  + ++ AEA + GLID +  + E+ 
Sbjct: 199 NRDQFFSAAEAIEYGLIDRILNKSELI 225


>gi|282896316|ref|ZP_06304338.1| Peptidase S14, ClpP [Raphidiopsis brookii D9]
 gi|281198812|gb|EFA73691.1| Peptidase S14, ClpP [Raphidiopsis brookii D9]
          Length = 194

 Score = 45.8 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 31/179 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  ++  +  +  DD    + + ++SPGGS  AG AI+  IQ +K+    I      +  
Sbjct: 44  ANAIVAYLLYLDSDDQTKPIYLYINSPGGSVTAGMAIYDTIQYIKSEVITICVGLAASMG 103

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           +  L + A    +A   S +               ++     I  ++             
Sbjct: 104 SFLLAAGAKGKRLALPHSRIMIHQPSGGTRGQASDIEIEAREILRIRH------------ 151

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                                ++ +++      K     D   + +  EAK+ GLID V
Sbjct: 152 ------------------QLNQIYADNTGQVLSKIEKDMDRDFFMSAQEAKEYGLIDRV 192


>gi|42527179|ref|NP_972277.1| ATP-dependent Clp protease proteolytic subunit [Treponema denticola
           ATCC 35405]
 gi|67460504|sp|Q73M38|CLPP1_TREDE RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|41817603|gb|AAS12188.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
           denticola ATCC 35405]
          Length = 197

 Score = 45.8 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 62/195 (31%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I    +  ++ ++  +   +    + + ++SPGGS  AG AI+  +Q ++   
Sbjct: 30  IIFVDGEINDMSADLVVAQLLFLEAQNPDKDISLYINSPGGSVTAGLAIYDTMQHIRPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A N   A  +S V               ++     I  +K 
Sbjct: 90  QTICLGQCASMGAVLLAGGAKNKRYALPSSRVMIHQPWGGVQGQAVDINIQAKEIVRLKK 149

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
             +K                                +E+      +     +   + +  
Sbjct: 150 LTIKYF------------------------------AENTGKTEKQVAADMERDFFMSAE 179

Query: 217 EAKKVGLIDVVGGQE 231
           EA   G+ID V  + 
Sbjct: 180 EALTYGIIDTVMNRR 194


>gi|326502578|dbj|BAJ95352.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326506866|dbj|BAJ91474.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 300

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 57/191 (29%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++    + + ++SPGG   AG AI+  +Q ++   
Sbjct: 98  IVCIHGPIADETASLVVAQLLFLESENPLKPISLYINSPGGVVTAGLAIYDTMQYIRCPV 157

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + V                            
Sbjct: 158 NTICIGQAASMGSLLLAAGARGERRALPNARVMIHQPSGGAQGQ---------------- 201

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +    +        ++ ++      DK    +         
Sbjct: 202 --------------ATDIAIQAKEILKLRDRLNKIYAKHTGQNIDKIEQCMERDLFMDPE 247

Query: 217 EAKKVGLIDVV 227
           EA++ GLID V
Sbjct: 248 EAREWGLIDEV 258


>gi|220935297|ref|YP_002514196.1| hypothetical protein Tgr7_2129 [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996607|gb|ACL73209.1| conserved hypothetical protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 496

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 85/255 (33%), Gaps = 20/255 (7%)

Query: 10  TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSAT 67
            R  + +L+ +     ++++  ED       + I G I    S  ++  +++   D+ A 
Sbjct: 14  FRLGVWALLLILGAVLAFAATGEDRQRSALLLDIDGAIGPATSDYVVRGLKQAR-DEGAE 72

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV----------HEMAASAGYLISCA 117
            +I+ + +PGG   A   + + I                       + + AS    ++ A
Sbjct: 73  LVILRMDTPGGLDTAMREMIKEILASPVPVATYVAPAGSRAASAGTYILYASHIAAMAPA 132

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
           +N+  A   ++ G  G+  + P                             E   +  + 
Sbjct: 133 TNLGSATPVAIGGMPGMPDEQPQRDDRSRDREDKETKETKDKEAEAGDAAEERPAEPRRG 192

Query: 178 MQDVVDSSYHWFVRLVS-----ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQE 231
              +        V  +        RN  + +   + +    T +EA  + +IDVV    E
Sbjct: 193 TSPMERKVLEDAVAYIKGLAERHGRNAEWAE-QAVREAVNLTYSEALALNVIDVVAESVE 251

Query: 232 EVWQSLYALGVDQSI 246
           ++ + ++   V   +
Sbjct: 252 DLLKQIHGRTVKMDV 266


>gi|240950423|ref|ZP_04754674.1| putative Clp-like protease [Actinobacillus minor NM305]
 gi|240295043|gb|EER45899.1| putative Clp-like protease [Actinobacillus minor NM305]
          Length = 676

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 78/269 (28%), Gaps = 42/269 (15%)

Query: 30  HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
            ++      A I+I  +I      +Q+  + ++ +    +   + + + SPGG  + G A
Sbjct: 27  TIKAAKNDTAEISIYDEIGFWGVTAQQFAKDLKALGN--NLKQINLHIHSPGGDVFDGIA 84

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I+  ++     K     +  +AAS   +I+ A N I+  E +++                
Sbjct: 85  IYNLLKNHPANKT--VYIDGLAASMASVIAMAGNEIIMPENAMMMIH------------- 129

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
                    ++             ++                  +   +           
Sbjct: 130 -----KPWGIQGGDADDMRKYADLLDKVE------------STLITAYTAKTGKSETDLA 172

Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
            +     W TG E  + G  D +         + +  ++      +     KN  F    
Sbjct: 173 EMLKVETWLTGKECIEQGFADKLADPLVAMACIQSKKLEDYTNMPETI---KNMLFKPQG 229

Query: 265 NLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
           N   ++   +      Q  V     V  P
Sbjct: 230 NAGAATPTPEQPKNTTQQAVDNPQNVAKP 258


>gi|167040210|ref|YP_001663195.1| hypothetical protein Teth514_1572 [Thermoanaerobacter sp. X514]
 gi|300914294|ref|ZP_07131610.1| protein of unknown function DUF107 [Thermoanaerobacter sp. X561]
 gi|307724470|ref|YP_003904221.1| hypothetical protein Thet_1330 [Thermoanaerobacter sp. X513]
 gi|166854450|gb|ABY92859.1| protein of unknown function DUF107 [Thermoanaerobacter sp. X514]
 gi|300889229|gb|EFK84375.1| protein of unknown function DUF107 [Thermoanaerobacter sp. X561]
 gi|307581531|gb|ADN54930.1| protein of unknown function DUF107 [Thermoanaerobacter sp. X513]
          Length = 436

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 97/288 (33%), Gaps = 34/288 (11%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-QELIERIERISR 62
           +  ++ T  + L    L    F+  S +      V  + IRG ++    + ++R    ++
Sbjct: 1   MRSRVGTFVIFLITALLFFSLFTNVSGLPKEKGEVLFVPIRGTVDPGMAKFVKRAVEEAK 60

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           +  A  L+  +++PGG   A   I + I  + +  P    V+  A SAG LI+ +   + 
Sbjct: 61  ETEAALLVFEINTPGGLVDAAVEISQTI--LNSPVPTAAYVNSQATSAGVLIAISCENLY 118

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
            A  S +                     + ++V                    +     +
Sbjct: 119 MAPGSTI--------------------GAAETVPKEEKTISYWRSKLEGAAERRGRDPRI 158

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALG 241
            ++       +        +           T  +A ++ L D +   ++E+   L    
Sbjct: 159 VAAMADADVEI--------EGLKERGKILSLTDKKALELKLADGIAADRKELLTVLG--V 208

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
            D+ ++++K +   +   F     ++   L    I ++ +    G  A
Sbjct: 209 GDRDVKEVKPFFSERIASFVTSPFVAPMFLTIGFIGIITEVLTPGFGA 256


>gi|332981496|ref|YP_004462937.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mahella
           australiensis 50-1 BON]
 gi|332699174|gb|AEE96115.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mahella
           australiensis 50-1 BON]
          Length = 194

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 68/191 (35%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+++D+    ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IVFLDGEVDDATASLVVAQMLFLESEDPDKDIHLYINSPGGSVTAGFAIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   S +     +                      
Sbjct: 89  STICIGMAASMGAFLLAAGAKGKRYALPNSEILIHQPMGGARGQ---------------- 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            + +  + +         ++SE    PY+K    +D   + +  
Sbjct: 133 --------------ATDIMIHAEQIVRIKRRLNEILSERTGQPYEKIEKDTDRDFFMSAQ 178

Query: 217 EAKKVGLIDVV 227
           EAK+ G++D V
Sbjct: 179 EAKEYGIVDEV 189


>gi|309790148|ref|ZP_07684720.1| endopeptidase Clp [Oscillochloris trichoides DG6]
 gi|308227733|gb|EFO81389.1| endopeptidase Clp [Oscillochloris trichoides DG6]
          Length = 215

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 67/193 (34%), Gaps = 33/193 (17%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            I  QI +   ++ ++  +  DD    + + ++SPGGS  AG AI+  ++ ++     + 
Sbjct: 49  PIEDQIANL--IVAQLLFLDSDDPDRDIWLYINSPGGSITAGLAIYDTMRHIRANVATVC 106

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                + +   L   A     +   S                       +I    +    
Sbjct: 107 VGMAGSMATPILAGGAKGKRYSLPHS-----------------------TIHMHPAGGGA 143

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220
              +P  E+  +        +         L++       ++     D  ++ T  +AK+
Sbjct: 144 RGYAPDVEIMARE-------LLREQQLIRELLATDTGQTIERIAKDFDRDLFMTPIQAKE 196

Query: 221 VGLIDVVGGQEEV 233
            G+ID +  +E++
Sbjct: 197 YGIIDEILTREDI 209


>gi|326492708|dbj|BAJ90210.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 285

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 57/191 (29%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++    + + ++SPGG   AG AI+  +Q ++   
Sbjct: 83  IVCIHGPIADETASLVVAQLLFLESENPLKPISLYINSPGGVVTAGLAIYDTMQYIRCPV 142

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + V                            
Sbjct: 143 NTICIGQAASMGSLLLAAGARGERRALPNARVMIHQPSGGAQGQ---------------- 186

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +    +        ++ ++      DK    +         
Sbjct: 187 --------------ATDIAIQAKEILKLRDRLNKIYAKHTGQNIDKIEQCMERDLFMDPE 232

Query: 217 EAKKVGLIDVV 227
           EA++ GLID V
Sbjct: 233 EAREWGLIDEV 243


>gi|315645974|ref|ZP_07899095.1| hypothetical protein PVOR_11004 [Paenibacillus vortex V453]
 gi|315278735|gb|EFU42049.1| hypothetical protein PVOR_11004 [Paenibacillus vortex V453]
          Length = 453

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 89/226 (39%), Gaps = 21/226 (9%)

Query: 14  MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISRDDSATALIVS 72
           ++ L+++ + +      V  N   V  I ++ QIE      +ER  + +   SA  +++ 
Sbjct: 18  VMILISIGMYFGPTKPAVAANVGSVYVIPVKQQIERGLTSFMERGFKEAEQMSAGLIVLE 77

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           + +PGG       I   ++   +  P++  +   AASAG  I+  ++ I  ++ S++G+ 
Sbjct: 78  IDTPGGLVDQAGKIATLMK--DSNIPIVAYITGDAASAGSYIALNADKIAMSDGSMIGAA 135

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
            ++            +            K++ +  +E + +   +   + D +    +  
Sbjct: 136 YMVDSRGNRIEDAKLVSW---------WKSKMAGAAEASGRNKNIAMGMADINLKVDMPE 186

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSL 237
           +     +      ++S     T  EA K G  D +    EEV   +
Sbjct: 187 I----GLTKQPGDIIS----LTPDEALKTGYADTLANSTEEVIAWM 224


>gi|296101559|ref|YP_003611705.1| ATP-dependent Clp protease, protease subunit [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295056018|gb|ADF60756.1| ATP-dependent Clp protease, protease subunit [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 207

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 62/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 102 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L+++      ++        R  + +
Sbjct: 156 ------------------------ILKVKARMNELMAQHTGQSLEQIERDTERDRFLSAS 191

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 192 EAVEYGLVDSILT 204


>gi|222150769|ref|YP_002559922.1| ATP-dependent protease proteolytic subunit ClpP [Macrococcus
           caseolyticus JCSC5402]
 gi|254763793|sp|B9EAG5|CLPP_MACCJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|222119891|dbj|BAH17226.1| ATP-dependent protease proteolytic subunit ClpP [Macrococcus
           caseolyticus JCSC5402]
          Length = 194

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 65/196 (33%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  ++ ++  +   D+   + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGMAIYDTMQHIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + V     L         ++           
Sbjct: 89  QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAR------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216
                                   +  +     R+++E    P +K    +D     T  
Sbjct: 142 -----------------------HILKTREKLNRILAERTGQPIEKIEKDTDRDNFLTAD 178

Query: 217 EAKKVGLIDVVGGQEE 232
           EAK  GLID V    E
Sbjct: 179 EAKAYGLIDEVMHPAE 194


>gi|115311786|sp|Q2GD19|CLPP_NEOSM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 201

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G IED     ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 29  VVFLTGPIEDGMASLIVAQLLFLEAENPDKDIFMYINSPGGVVTAGLSIYDTMQYIKPSV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +A++  L S A     A   S V               ++           
Sbjct: 89  STVCVGQAASAASLILASGAEGKRFALPHSRVMVHQPSGGVRGQATDMEIHVKE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +         +  +       K   L +   + +  
Sbjct: 143 ------------------------ILQLKRMINEIYQKHTGETIKKIETLLERDTFLSPE 178

Query: 217 EAKKVGLIDVVGG 229
           EAKKVG+ID +  
Sbjct: 179 EAKKVGIIDDIIT 191


>gi|255280960|ref|ZP_05345515.1| Clp protease [Bryantella formatexigens DSM 14469]
 gi|255268408|gb|EET61613.1| Clp protease [Bryantella formatexigens DSM 14469]
          Length = 221

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 77/216 (35%), Gaps = 37/216 (17%)

Query: 37  HVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
            +  I I G++E              + ++ ++  I        +++ L++ GG   AG 
Sbjct: 30  KIHLITIIGEVEGHECLPANTKTTKYEHILPQLAAIEDSREIEGVLILLNTVGGDVEAGL 89

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
           AI   I  +   KP ++ V   + S G  I+ +++     ET  +    V      +   
Sbjct: 90  AIAEMIASL--SKPTVSLVLGGSHSIGVPIAVSADYSFIVETGTMVIHPVRMSGTVIGAP 147

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
                                 F ++  + +  +     ++      L+ +   +     
Sbjct: 148 -----------------QTYDYFRQMQDRILGFISGHCSATRDRLEELMLD-TGMLTKDL 189

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                G I  G++A + G+I+ VGG  +  + +++L
Sbjct: 190 -----GTILVGSQAVEEGIINQVGGISDAMKKIHSL 220


>gi|288941151|ref|YP_003443391.1| ATP-dependent Clp protease proteolytic subunit ClpP [Allochromatium
           vinosum DSM 180]
 gi|288896523|gb|ADC62359.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Allochromatium vinosum DSM 180]
          Length = 215

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 65/194 (33%), Gaps = 31/194 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  ++ ++  +  ++    + + ++SPGGS  AG AI+  ++ ++   
Sbjct: 43  VIFLVGPVEDHMANLVVAQLLFLESENPDKDIHLYINSPGGSVTAGLAIYDTMRFIRPDV 102

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A+        S +     L  +      ++     I  +  
Sbjct: 103 STMCIGQAASMGALLLAGGAAGKRFCLPHSRMMIHQPLGGFQGQATDIEIHAREILYI-- 160

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                             + +  ++       +  ++E               R   G  
Sbjct: 161 -----------------RERLNQILSHHTGQPIEKIAE----------DTDRDRFMDGET 193

Query: 218 AKKVGLIDVVGGQE 231
           A++ GLID V  + 
Sbjct: 194 AREYGLIDQVITER 207


>gi|291286449|ref|YP_003503265.1| hypothetical protein Dacet_0511 [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883609|gb|ADD67309.1| protein of unknown function DUF107 [Denitrovibrio acetiphilus DSM
           12809]
          Length = 412

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 81/278 (29%), Gaps = 45/278 (16%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVS 72
           L  + L    F+  +        +  I + G I    E  +   ++    +     L++ 
Sbjct: 4   LLFLILMAAAFTVQAKD------IFVITVDGVITGYTEKYIETSLKEAKANGGV--LLIQ 55

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           L +PGG   +   I + + +                                   ++  +
Sbjct: 56  LDTPGGILDSTRGIVQVLLESDTP-------------------------------VIIFV 84

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                          L     ++          P +         M   +++    F+R 
Sbjct: 85  SPQGARAGSAGTFIVLASHYAAMAEGTNIGAAHPVNVTGKDLEGHMAQKIENDTVAFMRS 144

Query: 193 VSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
           ++E R    +     ++D + +T  EA  +GL+D V    +       L +     K+  
Sbjct: 145 IAEKRGRDVESAVSTVTDSKSYTAKEALSLGLVDQVTNTIDEVSEAAGLKLGFQPGKVVH 204

Query: 252 WN---PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
                  K  +F    N+ +  L    + +  + K+ G
Sbjct: 205 LTATPLQKVAFFLSDPNVLVLLLFIGILAIFLEFKIPG 242


>gi|220906939|ref|YP_002482250.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. PCC
           7425]
 gi|219863550|gb|ACL43889.1| Endopeptidase Clp [Cyanothece sp. PCC 7425]
          Length = 198

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 63/187 (33%), Gaps = 33/187 (17%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            +  +I +  +++  +  +  +D    +++ ++SPGGS  AG AI+  +Q +K+    I 
Sbjct: 38  EVDDEIAN--QIVAVMLYLDSEDPGKDIVLYINSPGGSVTAGMAIYDTMQHIKSDVVTIC 95

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                +  +  L + A    +A   S +               ++     I  ++     
Sbjct: 96  VGLAASMGSFLLTAGAPGKRLALPHSRIMIHQPSGGTRGQASDIEIEAREIIRIRH---- 151

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKK 220
                                        ++ ++    P +K    +      +  EAK 
Sbjct: 152 --------------------------QLNQIYADRTGQPLEKIEKDIDRDYFMSAQEAKD 185

Query: 221 VGLIDVV 227
            GLID V
Sbjct: 186 YGLIDRV 192


>gi|187776850|ref|ZP_02993323.1| hypothetical protein CLOSPO_00389 [Clostridium sporogenes ATCC
           15579]
 gi|187775509|gb|EDU39311.1| hypothetical protein CLOSPO_00389 [Clostridium sporogenes ATCC
           15579]
          Length = 194

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  ++ D+    ++ ++  +  +D    + + ++SPGGS  +G AI+  +Q +K   
Sbjct: 29  IIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIYLYINSPGGSITSGMAIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   S V     L      +     +G+  + +  
Sbjct: 89  STICVGMAASMGAFLLAAGAKGKRYALPNSEVMIHQPLG---GFRGQATDIGIHAERILK 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                                S+    P ++           +  
Sbjct: 146 MKKKLNTIL---------------------------SDRTGKPLEQVELDTERDHFLSAE 178

Query: 217 EAKKVGLIDVVGG 229
           EAK+ GLID V  
Sbjct: 179 EAKEYGLIDEVID 191


>gi|260768947|ref|ZP_05877881.1| ATP-dependent Clp protease proteolytic subunit [Vibrio furnissii
           CIP 102972]
 gi|260616977|gb|EEX42162.1| ATP-dependent Clp protease proteolytic subunit [Vibrio furnissii
           CIP 102972]
 gi|315180643|gb|ADT87557.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           furnissii NCTC 11218]
          Length = 208

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 63/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L      +     + +  + + +
Sbjct: 102 STLCIGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLG---GFQGQASDIQIHAQEILT 158

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                             RL+++    P +            +  
Sbjct: 159 IKNK---------------------------LNRLLADHTGQPLEVIERDTDRDNFMSAQ 191

Query: 217 EAKKVGLIDVVGG 229
           +A   GL+D +  
Sbjct: 192 QAVDYGLVDALLT 204


>gi|332532271|ref|ZP_08408152.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038369|gb|EGI74814.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 205

 Score = 45.8 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED+    ++ ++  +  ++    + + ++SPGGS  AG AI+  +  +K   
Sbjct: 38  IIFLTGQVEDNMANLILAQMLFLESENPDKDIFLYINSPGGSVTAGMAIYDTMNFIKPDV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +       +     I S+  
Sbjct: 98  STICVGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQASDFEIHAKEILSI-- 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            RL++E    P D            + +
Sbjct: 156 ----------------------------KDKLNRLMAEHTGQPLDIISKDTDRDNFMSAS 187

Query: 217 EAKKVGLIDVVGGQEE 232
           +A   GL+D V    +
Sbjct: 188 QAVDYGLVDSVFTNRD 203


>gi|116492258|ref|YP_803993.1| ATP-dependent Clp protease proteolytic subunit [Pediococcus
           pentosaceus ATCC 25745]
 gi|122266278|sp|Q03GX1|CLPP_PEDPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116102408|gb|ABJ67551.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pediococcus
           pentosaceus ATCC 25745]
          Length = 197

 Score = 45.8 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 60/192 (31%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D     +I ++  +   DS   + + ++SPGG   AG AI+  +  +K+  
Sbjct: 29  IIMLSGPIDDDLANSIISQLLFLDAQDSEKDIYLYINSPGGVVTAGLAIYDTMNFIKSDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++    S       A   S V            +  ++           
Sbjct: 89  QTIVMGMAASMASVLASSGTKGKRFALPHSEVMIHQPSGGAQGQQTEIEIAAEQ------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +  +      +++E+   P +K           +  
Sbjct: 143 ------------------------ILKTRKELNTILAENSGQPLEKINIDTERDNYLSAQ 178

Query: 217 EAKKVGLIDVVG 228
           +A + GLID + 
Sbjct: 179 DAVEYGLIDGIM 190


>gi|329894939|ref|ZP_08270738.1| ATP-dependent Clp protease proteolytic subunit [gamma
           proteobacterium IMCC3088]
 gi|328922668|gb|EGG30003.1| ATP-dependent Clp protease proteolytic subunit [gamma
           proteobacterium IMCC3088]
          Length = 200

 Score = 45.4 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 60/195 (30%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG AI+  ++ +K   
Sbjct: 35  VIFVVGQVEDHMANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGLAIYDTMKFIKPDV 94

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L + A         +                 +D     I  +  
Sbjct: 95  TTTCMGQAASMGAFLLSAGAKGKRYCLPNARTMIHQPSGGAQGQATDIDIQAKEILII-- 152

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                            RL++E    P D         R     
Sbjct: 153 ----------------------------RERLNRLMAEHTGQPIDVIERDTERDRFMNAE 184

Query: 217 EAKKVGLIDVVGGQE 231
           ++K+ GL+D V    
Sbjct: 185 QSKEYGLVDEVVSSR 199


>gi|25019682|gb|AAN71768.1| ClpP2 [Synechococcus elongatus PCC 7942]
          Length = 302

 Score = 45.4 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 31/182 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q+V      I      +  
Sbjct: 137 ADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMG 196

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L   A    +A  ++ +     L         ++                       
Sbjct: 197 AFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIE----------------------- 233

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228
                  +    +         L+++    P +K  V +D   + +  EAK  GLID V 
Sbjct: 234 -------IQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 286

Query: 229 GQ 230
            +
Sbjct: 287 TR 288


>gi|84394240|ref|ZP_00992968.1| hypothetical membrane protein [Vibrio splendidus 12B01]
 gi|84375154|gb|EAP92073.1| hypothetical membrane protein [Vibrio splendidus 12B01]
          Length = 468

 Score = 45.4 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 74/250 (29%), Gaps = 26/250 (10%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIE 58
           M F+LK +    ++              S V   +  V  I + G I    S  L   IE
Sbjct: 1   MTFILKYLFAFLLLF-------------SSVFAQADDVWVIEVNGGIGPATSDYLTREIE 47

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118
           +   D+ A  +I+ +++PGG   +   I R+I                 A++       +
Sbjct: 48  QA-HDEQAKLIILKMNTPGGLDSSMRDIIRSITTSPIPIATWVGPAGSRAASAGTYILLA 106

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV--KSSPMKAEPSPFSEVNPKAVQ 176
           + I +                  K   + L     +    ++    +     E + +   
Sbjct: 107 SHIASMAPGTNLGAATPVSLGGGKAPANPLSPQDDANKDDNTSTSEQDETKQENSDQVKA 166

Query: 177 MMQDVVDSSYHWFVRLVS----ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
                          +VS     +RN  + +   + +        A  + +ID +     
Sbjct: 167 TTAMEKKVINDAAAYIVSLAKLHNRNEEWAE-KAVREAASLDSENALTLNVIDFIASD-- 223

Query: 233 VWQSLYALGV 242
             Q L  L  
Sbjct: 224 -LQQLVELSN 232


>gi|317970581|ref|ZP_07971971.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CB0205]
          Length = 200

 Score = 45.4 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 32/187 (17%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            +   I +S  L+ ++  +  DD++  + + ++SPGGS  AG AI+  IQ VK+    I 
Sbjct: 38  EVNDAIANS--LVAQMLYLDSDDNSKPIYLYINSPGGSVTAGLAIYDTIQYVKSDVVTIC 95

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                +  A  L +      +A   S +     L      +    ++             
Sbjct: 96  VGLAASMGAFLLGAGTKGKRLALPHSRIMIHQPLGGTSQRQASDIEIEAR---------- 145

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220
                               +          ++     P +K    +D   + +  EA  
Sbjct: 146 -------------------EILRMKDMLNNSMAGMTGQPVEKIEKDTDRDYFMSAEEAMN 186

Query: 221 VGLIDVV 227
            GLID V
Sbjct: 187 YGLIDRV 193


>gi|320102927|ref|YP_004178518.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
           pallida ATCC 43644]
 gi|319750209|gb|ADV61969.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
           pallida ATCC 43644]
          Length = 198

 Score = 45.4 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 59/192 (30%), Gaps = 34/192 (17%)

Query: 40  RIAIRGQIED---SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           RI I G   D   S  ++ ++  ++ +D    + + ++SPGGS  AG AI+  +Q V   
Sbjct: 28  RIIILGTAIDESVSNSVVAQLLYLASEDPKADIRLYINSPGGSVTAGLAIYDMMQSVPCD 87

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
                     +  +  L + A+    A     +     L                     
Sbjct: 88  VATYCIGQCASMGSLLLAAGAAGKRHAMPHGRIMIHQPLAGM------------------ 129

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTG 215
                       E     + +  +           + +       +K        R  + 
Sbjct: 130 ------------EGTATDIMIHAEEFLRMKKQLNGIYNHHTGQSLEKLEQDTDRDRFMSP 177

Query: 216 AEAKKVGLIDVV 227
            EAK+ GLID +
Sbjct: 178 REAKEYGLIDHI 189


>gi|222624791|gb|EEE58923.1| hypothetical protein OsJ_10573 [Oryza sativa Japonica Group]
          Length = 282

 Score = 45.4 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I   G +ED     ++ ++  +   D    +I+ ++SPGGS  AG AIF  ++ ++   
Sbjct: 107 IIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTMKHIRPDV 166

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L +       +   S +     L      +  L+     +     
Sbjct: 167 STVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQANEM----- 221

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                              ++     P DK           +  
Sbjct: 222 -------------------------LHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAK 256

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 257 EAKEYGLIDGV 267


>gi|220909724|ref|YP_002485035.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 7425]
 gi|219866335|gb|ACL46674.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 7425]
          Length = 236

 Score = 45.4 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 63/183 (34%), Gaps = 31/183 (16%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  ++ ++  +  +D    + + ++SPGGS  AG AI+  IQ V      I      +  
Sbjct: 72  ADSIVAQLLFLDSEDPERDIYLYINSPGGSVTAGMAIYDTIQHVHADVCTICFGLAASMG 131

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L   A+   +A   S +     L      +     + +  K +     K        
Sbjct: 132 AFLLAGGAAGKRMALPHSRIMIHQPLG---GAQGQAVDIEIQAKEILYHKRK-------- 180

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228
                                 L++     P+++    ++   + +  EAK  GL+D V 
Sbjct: 181 -------------------LNELLAHHTGQPFERIEADTERDFFMSAEEAKNYGLVDQVI 221

Query: 229 GQE 231
            ++
Sbjct: 222 TRQ 224


>gi|297600816|ref|NP_001049902.2| Os03g0308100 [Oryza sativa Japonica Group]
 gi|63003513|dbj|BAD98161.1| ATP-dependent protease [Oryza sativa Japonica Group]
 gi|108707751|gb|ABF95546.1| ATP-dependent Clp protease proteolytic subunit 1, putative,
           expressed [Oryza sativa Japonica Group]
 gi|215740983|dbj|BAG97478.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215765780|dbj|BAG87477.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255674452|dbj|BAF11816.2| Os03g0308100 [Oryza sativa Japonica Group]
          Length = 282

 Score = 45.4 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I   G +ED     ++ ++  +   D    +I+ ++SPGGS  AG AIF  ++ ++   
Sbjct: 107 IIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTMKHIRPDV 166

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L +       +   S +     L      +  L+     +     
Sbjct: 167 STVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQANEM----- 221

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                              ++     P DK           +  
Sbjct: 222 -------------------------LHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAK 256

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 257 EAKEYGLIDGV 267


>gi|163815266|ref|ZP_02206643.1| hypothetical protein COPEUT_01426 [Coprococcus eutactus ATCC 27759]
 gi|158449461|gb|EDP26456.1| hypothetical protein COPEUT_01426 [Coprococcus eutactus ATCC 27759]
          Length = 193

 Score = 45.4 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 57/178 (32%), Gaps = 31/178 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +I ++  +  +D +  + + ++SPGGS  AG  I+  ++ +K     I      +  A  
Sbjct: 44  VIAQLLFLESEDPSKDISLYINSPGGSVTAGMGIYDTMRYIKCDVSTICCGMAASMGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L   A     A   S +     L         ++                          
Sbjct: 104 LAGGAKGKRYALPNSEIMIHQPLGGTQGQATEIEIAAR---------------------- 141

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGG 229
                    +  +     ++++E+   P D     +D   W T  EA   GLID V  
Sbjct: 142 --------HILKTKEKLNKMLAENTGKPLDVIAADTDRDNWMTADEACAYGLIDSVIT 191


>gi|332800332|ref|YP_004461831.1| peptidase S14 ClpP [Tepidanaerobacter sp. Re1]
 gi|332698067|gb|AEE92524.1| peptidase S14 ClpP [Tepidanaerobacter sp. Re1]
          Length = 229

 Score = 45.4 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 86/260 (33%), Gaps = 45/260 (17%)

Query: 30  HVEDNSPHVARIAIRGQIEDS----QELIERIERISRDD--SATALIVSLSSPGGSAYAG 83
           + ++       + + G+I  +     E+  +  +   D       L + ++SPGG  +AG
Sbjct: 8   NFKNQDEKTGELTLYGEIASATWWGDEITPKEFKADLDGLGDIDTLNIYINSPGGDVFAG 67

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
           +AI+  +++ K  K     +  +AAS   +++ A + I   + +++              
Sbjct: 68  QAIYSMLKRHKAHKN--VYIDGLAASIASVVAMAGDTIFMPKNAMMMIHNPWTFGLGNAD 125

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
              KL   +  ++                                 +    E   +  D+
Sbjct: 126 EFRKLAEDLDKIREG------------------------------LIAAYEERSALTRDE 155

Query: 204 TLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
            + + D   W T  E  + G  DVVG ++++                K  N PK      
Sbjct: 156 IIKIMDDETWLTADECFEYGFCDVVGKEKQMA------ACIDKTLLTKYRNTPKELLSRL 209

Query: 263 LKNLSISSLLEDTIPLMKQT 282
             +     LL+  I L  + 
Sbjct: 210 KPDEKKQELLKQKILLELEL 229


>gi|224030041|gb|ACN34096.1| unknown [Zea mays]
          Length = 259

 Score = 45.4 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++ A  + + ++SPGG   AG AI+  +Q +++  
Sbjct: 62  IVCIHGPITDDTASLVVAQLLFLESENPAKPVHLYINSPGGVVTAGLAIYDTMQYIRSPV 121

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      + ++  L + AS    A   + V                            
Sbjct: 122 TTLCIGQAASMASLLLAAGASGERRALPNARVMIHQPSGGASGQ---------------- 165

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +    +        ++ ++      D+    +         
Sbjct: 166 --------------ASDIAIHAKEILKVRDRLNKIYAKHTGQAIDRIEQCMERDMFMDPE 211

Query: 217 EAKKVGLIDVV 227
           EA   GLID V
Sbjct: 212 EAHDWGLIDEV 222


>gi|313159570|gb|EFR58933.1| conserved hypothetical protein [Alistipes sp. HGB5]
          Length = 101

 Score = 45.4 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/99 (11%), Positives = 30/99 (30%)

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
           ++K G  +  + +     +   + +       +++  +      F   V   R       
Sbjct: 1   MEKSGQKVHEIYAEESSDKNLAYRQALTGEYTLIRMRLSHLVAAFHADVKAGRQALRADA 60

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
             +  G  +   +A + GL D +   +E     +     
Sbjct: 61  PGVLTGATFFADKAIENGLADGIATLQECVDHAFIRASI 99


>gi|116793577|gb|ABK26796.1| unknown [Picea sitchensis]
          Length = 248

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G I D     ++ ++  +  ++    + + ++SPGG   AG AI+  +Q +K+  
Sbjct: 63  IICINGPIADETASVVVAQLLFLESENPQKPINMYINSPGGVVTAGLAIYDTMQYIKSPV 122

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L + +     A   + V                            
Sbjct: 123 TTLCIGQAASMGSLLLAAGSHGERRALPNARVMIHQPSGGASGQ---------------- 166

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            + +    +  +      L ++      +K     +   + +  
Sbjct: 167 --------------ASDIAIHAKEILKTRERLNGLYAKHTGQTIEKIEQFMERDTFMSPD 212

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 213 EAKEFGLIDEV 223


>gi|154506030|ref|ZP_02042768.1| hypothetical protein RUMGNA_03572 [Ruminococcus gnavus ATCC 29149]
 gi|153793529|gb|EDN75949.1| hypothetical protein RUMGNA_03572 [Ruminococcus gnavus ATCC 29149]
          Length = 193

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 52/181 (28%), Gaps = 31/181 (17%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  ++ ++  +  DD    + + ++SPGGS  AG AI+  +Q +K     +      +
Sbjct: 39  VSASVIVAQLLFLEADDPNKDIQLYINSPGGSVTAGLAIYDTMQYIKCDVSTVCIGMAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L   A     A   + +               +                      
Sbjct: 99  MGAFLLSGGAKGKRFALPNAEIMIHQPSGGAQGQATEISIAAE----------------- 141

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226
                         +  +      +++ +   P +            +  EAK  GLID 
Sbjct: 142 -------------HILRTRQKLNEIMAANTGQPLETIKADTERDNFMSAEEAKAYGLIDE 188

Query: 227 V 227
           V
Sbjct: 189 V 189


>gi|308235224|ref|ZP_07665961.1| ATP-dependent Clp protease proteolytic subunit [Gardnerella
           vaginalis ATCC 14018]
 gi|311114525|ref|YP_003985746.1| endopeptidase Clp [Gardnerella vaginalis ATCC 14019]
 gi|310946019|gb|ADP38723.1| endopeptidase Clp [Gardnerella vaginalis ATCC 14019]
          Length = 222

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 61/181 (33%), Gaps = 30/181 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    +++ ++SPGGS  A  AI+  +Q +K     +      +
Sbjct: 66  TSADDIMAQLLVLESMDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 125

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L + ++   +    + V          + K    +L                   
Sbjct: 126 AAAILLAAGSAGKRMILPNARVLIHQPAMGQDFGKATEIELQAK---------------- 169

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226
                         +     W    +++      ++    +    I T  +AK+ G++D 
Sbjct: 170 -------------EMLRLREWLESTLAKHTGQDIERIRKDIEVDTILTAPQAKEYGMVDE 216

Query: 227 V 227
           V
Sbjct: 217 V 217


>gi|325578442|ref|ZP_08148577.1| SppA protein [Haemophilus parainfluenzae ATCC 33392]
 gi|325160178|gb|EGC72307.1| SppA protein [Haemophilus parainfluenzae ATCC 33392]
          Length = 223

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 10/128 (7%)

Query: 29  SHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYA 82
           S  E   P V  +  +G I  S      +E+   I     DD    +++ L SPGG  + 
Sbjct: 95  SEKETPKPCVYVLDFKGDISASETTALREEISAIINVAKADDE---VLLRLESPGGVVHG 151

Query: 83  GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  + ++K +   +T  V ++AAS GY+++C ++ IV+A  +++GSIGV+ Q P +
Sbjct: 152 YGLAASQLARLKQKGIKLTVAVDKVAASGGYMMACVADRIVSAPFAIIGSIGVVAQIPNI 211

Query: 142 KPFLDKLG 149
              L  + 
Sbjct: 212 HRLLKNMM 219


>gi|310829091|ref|YP_003961448.1| hypothetical protein ELI_3526 [Eubacterium limosum KIST612]
 gi|308740825|gb|ADO38485.1| hypothetical protein ELI_3526 [Eubacterium limosum KIST612]
          Length = 195

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 60/195 (30%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D+    ++ ++  +  D+    + + ++SPGGS  +G AI+  +  +K   
Sbjct: 31  IIFLDGEINDTTSSLIVAQLIFLEADNPDKDIEMYINSPGGSITSGFAIYDTMNFIKCDV 90

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A     A   S +     L         ++           
Sbjct: 91  STMCVGMAASMGAFLLAAGAKGKRKALPNSEIMIHQPLGGAQGQSVDVEIYAKR------ 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +  +      ++SE    P D            +  
Sbjct: 145 ------------------------LIKTREKLNEILSEKTGQPIDVIARDTDRDNFMSAE 180

Query: 217 EAKKVGLIDVVGGQE 231
           EA + GLID +    
Sbjct: 181 EALEYGLIDQIVSSR 195


>gi|71281884|ref|YP_270452.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Colwellia
           psychrerythraea 34H]
 gi|110816457|sp|Q47XL8|CLPP_COLP3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|71147624|gb|AAZ28097.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Colwellia
           psychrerythraea 34H]
          Length = 220

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  +I ++  +  +     + + ++SPGGS  AG AI+  ++ +K   
Sbjct: 53  VIFLCGQVEDHMANLIIAQLLFLESESPDKDIYLYINSPGGSVTAGMAIYDTMKFIKPNI 112

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L             + V     L  +       +     I  +K 
Sbjct: 113 STVCIGQAASMGAFLLSGGEKGKRYCLPNARVMIHQPLGGFQGQASDFEIHAKEILFIKD 172

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
              K                              L++E      DK           +  
Sbjct: 173 KLNK------------------------------LMAEHTGQTLDKVSQDTDRDNFLSAE 202

Query: 217 EAKKVGLIDVV 227
            A + GL+D +
Sbjct: 203 AAVEYGLVDSI 213


>gi|71907348|ref|YP_284935.1| ATP-dependent Clp protease proteolytic subunit ClpP [Dechloromonas
           aromatica RCB]
 gi|110816458|sp|Q47FB6|CLPP_DECAR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|71846969|gb|AAZ46465.1| ATP-dependent Clp protease proteolytic subunit ClpP [Dechloromonas
           aromatica RCB]
          Length = 209

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 66/197 (33%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++    +   ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLVGPVNDVTANLVVAQLLFLEAENPDKDIYFYINSPGGSVTAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A     A   S V     L  +      +      I S+  
Sbjct: 102 STLCIGQAASMGAFLLNAGAKGKRFALPNSRVMIHQPLGGFQGQASDIAIHAKEILSI-- 159

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216
                                            R+++E    P ++    +D     + A
Sbjct: 160 ----------------------------RDRLNRIMAEHSGQPLERIEKDTDRDNFLSAA 191

Query: 217 EAKKVGLIDVVGGQEEV 233
           EA + GLID V  + + 
Sbjct: 192 EAAEYGLIDKVLTRRDA 208


>gi|56963977|ref|YP_175708.1| translocation-enhancing protein TepA [Bacillus clausii KSM-K16]
 gi|56910220|dbj|BAD64747.1| translocation-enhancing protein TepA [Bacillus clausii KSM-K16]
          Length = 243

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 65/197 (32%), Gaps = 25/197 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + +I ++  + ++     L++ L++ GG   AG A+   I  +              +  
Sbjct: 67  EHMIPQLVAVEQNPKIEGLLIILNTVGGDVEAGLALSEMIASI--------------SKP 112

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              +       +    +   S   + +   +     +L   +  V             ++
Sbjct: 113 TVTLVLGGGHSIGVPIATAASYSFIAETATMTIHPVRLTGLVIGVPQ-----TFEYLDKM 167

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
             + ++ +      S   F  L+    N+  D       G    G +A + GLI+ VGG 
Sbjct: 168 QDRVIRFVTSHSQISEEKFKELMFSKGNLTRDI------GTNVIGTDAVEYGLINEVGGI 221

Query: 231 EEVWQSLYALGVDQSIR 247
            +  + L  +  +Q   
Sbjct: 222 GQAIRKLNEMIEEQKAD 238


>gi|300856723|ref|YP_003781707.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           ljungdahlii DSM 13528]
 gi|300436838|gb|ADK16605.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           ljungdahlii DSM 13528]
          Length = 194

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 31/178 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGGS  +G AI+  +Q +K+    I      +  A  
Sbjct: 44  VVAQLLFLEAEDPDKDIYLYINSPGGSITSGMAIYDTMQYIKSDVSTICIGMGASMGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     A   + +     L  +                                  
Sbjct: 104 LTAGAKGKRFALPNAEIMIHQPLGGFQGQ------------------------------A 133

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGG 229
             + +    +         ++SE    P +K           T  EAK+ GLID V  
Sbjct: 134 TDIGIHAKRILDIKKKLNTIISERTGQPLEKVEKDTERDNFMTAEEAKEYGLIDEVIT 191


>gi|253990891|ref|YP_003042247.1| ATP-dependent Clp protease proteolytic subunit [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782341|emb|CAQ85505.1| ATP-dependent proteolytic subunit of clpA-ClpP serine protease,
           heat shock protein F21.5 [Photorhabdus asymbiotica]
          Length = 207

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 63/196 (32%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +      ++           
Sbjct: 102 STICMGQACSMGAFLLTAGAEGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAQE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                                   +         L+++      ++        R  + +
Sbjct: 156 ------------------------ILKVKGRMNSLMAKHTGKSLEEIEKDTERDRFLSAS 191

Query: 217 EAKKVGLIDVVGGQEE 232
           EA + GL+D +    +
Sbjct: 192 EAVEYGLVDKIFTHRD 207


>gi|308177634|ref|YP_003917040.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter
           arilaitensis Re117]
 gi|307745097|emb|CBT76069.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter
           arilaitensis Re117]
          Length = 219

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 52/183 (28%), Gaps = 29/183 (15%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    + + ++SPGGS  A  AI+  IQ ++     +      +
Sbjct: 54  ASADDVMAQLLVLESMDPERDVTLYINSPGGSFTAMTAIYDTIQFIRPEVQTVCLGQAAS 113

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L +      +A   + V                                      
Sbjct: 114 AAAVLLAAGTPGKRLALPNARVLIHQPAM-------------------GGGERGTATDLQ 154

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226
            +                       ++       +K    +      T +EAK  G++D 
Sbjct: 155 IQAEEVMRMRSWLEET---------IASHSGQDVEKVRDDVERDLFMTASEAKVYGIVDE 205

Query: 227 VGG 229
           V  
Sbjct: 206 VLT 208


>gi|268611241|ref|ZP_06144968.1| ATP-dependent Clp protease, protease subunit [Ruminococcus
           flavefaciens FD-1]
          Length = 196

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 57/176 (32%), Gaps = 29/176 (16%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +   D    + + ++SPGGS  AG AI+  +  +K     I      +  A  
Sbjct: 45  VVAQLLYLESQDPEKDISLYINSPGGSVTAGFAIYDTMNYIKCDVSTICIGMAASMGAFL 104

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L S A    +A   S +     L          D                          
Sbjct: 105 LSSGAKGKRIALPNSEIMIHQPLIGGGLGGQQTDI------------------------- 139

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
               +    ++ + +    +++E+     ++     +   + T  EA   GLID V
Sbjct: 140 ---MIHAKNMERTRNRLESILAENTGKSVEEIHAACERDNYMTAQEAMDYGLIDKV 192


>gi|257452229|ref|ZP_05617528.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           3_1_5R]
 gi|257465976|ref|ZP_05630287.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917132|ref|ZP_07913372.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|317058772|ref|ZP_07923257.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           3_1_5R]
 gi|313684448|gb|EFS21283.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           3_1_5R]
 gi|313691007|gb|EFS27842.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 195

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 60/180 (33%), Gaps = 28/180 (15%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  L+ ++  +  +D    +I+ ++SPGGS  AG AI+  +  VK     +      +  
Sbjct: 40  AASLVAQLLYLEAEDPTKDIILYINSPGGSVSAGLAIYDTMNYVKPDIQTVCIGQAASMG 99

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L +       A E S +     L            + +  K ++++  K        
Sbjct: 100 AFLLSAGTKGKRFALENSRIMIHQPLGGTGSGYHQATDVQIIAKELQATKEK-------- 151

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVG 228
                                 +++++     ++           T  EA   GLID+V 
Sbjct: 152 -------------------LASIIAKNSGKTTEEVLEDTERDNYLTAEEAVNYGLIDMVM 192


>gi|121534809|ref|ZP_01666629.1| protein of unknown function DUF107 [Thermosinus carboxydivorans
           Nor1]
 gi|121306604|gb|EAX47526.1| protein of unknown function DUF107 [Thermosinus carboxydivorans
           Nor1]
          Length = 436

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 6/121 (4%)

Query: 11  RYVMLSLVTLTVVYFSWSSH---VEDNSPHVARIAIRGQIEDSQ-ELIERIERISRDDSA 66
           RY  L++V L ++ FS+        D+   V  I I+G+I  SQ  L+ R+   +    A
Sbjct: 2   RYKPLAVVFLLILVFSFVEPTVLAADDRQPVLLIPIKGEINGSQAALVRRVLTEASAQKA 61

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
            A+++ + + GG      AI   I  +    P I  V   A SAG LI+ A   IV A  
Sbjct: 62  QAVLIEIDTFGGLVDPAVAIRDII--IDYPLPTICYVKNRAWSAGALIALAHKHIVIAPG 119

Query: 127 S 127
            
Sbjct: 120 G 120


>gi|304437034|ref|ZP_07396997.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304369985|gb|EFM23647.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 203

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+DS    ++ ++  +  +D    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 30  IIFLGGPIDDSVANVIVAQMLFLESEDPDKDIHLYINSPGGVVTAGLAIYDTMQYIKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + +     L                      
Sbjct: 90  STICVGQAASMGSILLTAGAKGKRYALPHARIMIHQPLGGAQGQST-------------- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            +Q+    +         +++       +K           +  
Sbjct: 136 ----------------DIQIQAKEILRLREVGNEILAHHTGQDTEKINVDTERDNFMSAE 179

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 180 EAKEYGLIDEV 190


>gi|221641142|ref|YP_002527404.1| periplasmic serine protease [Rhodobacter sphaeroides KD131]
 gi|221161923|gb|ACM02903.1| Periplasmic serine protease [Rhodobacter sphaeroides KD131]
          Length = 305

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 81/228 (35%), Gaps = 24/228 (10%)

Query: 39  ARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           A + +RG +  +               L E +  ++  + A A+++ + SPGG     EA
Sbjct: 61  AVVPVRGILTPNMAQYERWFGWATYHGLAETLAHLAASEDAAAIVLEIDSPGGLVCGIEA 120

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
              AI      KPV   V  +AASA Y ++  +  IV    ++ GSIGV          +
Sbjct: 121 AAEAIAAAATLKPVHALVSPLAASAAYWLASQATEIVMTPGAVAGSIGV---ALTAAAHV 177

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204
                  +  + S   A               +Q  +D +   F   VS  R IP  +  
Sbjct: 178 QPGTNGAQIFEMSSRHARAKRPDASTEAGRAELQRSLDEAEAAFHAAVSAGRAIPAAELA 237

Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
                       G  +   EA + GL D    +   +  L A  V +S
Sbjct: 238 ARLSVTDDPQDGGATFRAPEAIRRGLADRTETRAAFYARLTARTVPKS 285


>gi|298491692|ref|YP_003721869.1| ATP-dependent Clp protease proteolytic subunit ClpP ['Nostoc
           azollae' 0708]
 gi|298233610|gb|ADI64746.1| ATP-dependent Clp protease, proteolytic subunit ClpP ['Nostoc
           azollae' 0708]
          Length = 232

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  ++ ++  +  +DS   + + ++SPGGS YAG AI+  IQ+++   
Sbjct: 55  IIFLGTPIDDNVANSIVAQLLFLDAEDSGKDIQLYINSPGGSVYAGMAIYDTIQQIRPDV 114

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +  +   ++   S +     L         ++     I  +  
Sbjct: 115 VTICFGLAASMGAFLLTAGTAGKRMSLPDSRIMIHQPLGGAQGQAIDIEIQAREILYI-- 172

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                            +L+++    P D+    ++   + +  
Sbjct: 173 ----------------------------KGNLNQLMAKHTGQPLDRIEADTERDFFMSAE 204

Query: 217 EAKKVGLIDVV 227
           EAK  GLID V
Sbjct: 205 EAKNYGLIDQV 215


>gi|293375439|ref|ZP_06621720.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Turicibacter
           sanguinis PC909]
 gi|325844477|ref|ZP_08168204.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Turicibacter sp. HGF1]
 gi|292645992|gb|EFF64021.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Turicibacter
           sanguinis PC909]
 gi|325489151|gb|EGC91535.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Turicibacter sp. HGF1]
          Length = 199

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 59/194 (30%), Gaps = 33/194 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D     ++ ++  ++ +D    + + ++SPGGS  AG AIF  +  +K   
Sbjct: 30  IIMLSGEINDHTANIVVAQLLFLAAEDPDKDINIYINSPGGSVTAGLAIFDTMNYIKCDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +           S V     L         +            
Sbjct: 90  STICVGMAASMGAFLLTAGTKGKRYVLPNSEVMIHQPLGGAQGQATEIAIAAK------- 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +  +     ++++E    P +K           +  
Sbjct: 143 -----------------------HILKTRDRLNKILAEQTGQPLEKIEQDTERDNFMSAD 179

Query: 217 EAKKVGLIDVVGGQ 230
           EA   GL+D V  +
Sbjct: 180 EAVAYGLVDQVVTR 193


>gi|229096954|ref|ZP_04227923.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-29]
 gi|228686564|gb|EEL40473.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-29]
          Length = 239

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 69/213 (32%), Gaps = 38/213 (17%)

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
           D    + + ++SPGGS +   AI   +Q+   +  VI+ +  + AS   ++   S+ I+ 
Sbjct: 43  DGIETINLYINSPGGSVFETMAIIAMLQRHPAK--VISYIDGIGASCASVLPMISDKIIM 100

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
              S++    V   + Y     D+L  +   ++                           
Sbjct: 101 YANSML---MVHNAWTYASGNADQLRKAADDIE-------------------------RI 132

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           +       L      +  D    L D   W +  EA + GL D +         L     
Sbjct: 133 NQSMVQHYLTRAGDKLDEDILKQLLDAETWLSADEAMEYGLCDEIISANNAAACL----- 187

Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
               + +K++            N+S   +LE  
Sbjct: 188 --DEKWMKEYKNVPQQLVNTQANISSDEMLERQ 218


>gi|254818307|ref|ZP_05223308.1| putative acyl-CoA dehydrogenase [Mycobacterium intracellulare ATCC
           13950]
          Length = 714

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 83/242 (34%), Gaps = 18/242 (7%)

Query: 63  DDSATALI-VSLSSPGGSA-----YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116
           D  A  ++ ++L  P GSA     +  E++  A++++   K  IT V   +A   +    
Sbjct: 9   DKDADGIVTLTLDDPTGSANVMNEHYSESMHNAVERLAAEKDSITGVVITSAKKTFFAGG 68

Query: 117 ASNIIV-AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-------PMKAEPSPFS 168
               ++     +   +   +         L+ LG  + +  +         +        
Sbjct: 69  DLKGMINLGPENAGEAFDTVESVKRDLRALETLGKPVVAAINGAALGGGLEIALACHHRI 128

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSE---SRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
             + K   +    V          V+       I      VLS G  +  A+AK++GL+D
Sbjct: 129 AADVKGSVLGLPEVTLGLLPGGGGVTRTVRMFGIQKAFMEVLSQGTRFKPAKAKEIGLVD 188

Query: 226 VV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
            + G  +E+  +  A          + W+           +    + +  + P + + ++
Sbjct: 189 ELVGSVDELVPAAKAWIKANPDSHEQPWDKKGYKMPGGTPSSPALAGILPSFPALLKKQL 248

Query: 285 QG 286
           +G
Sbjct: 249 KG 250


>gi|88608072|ref|YP_506627.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600241|gb|ABD45709.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neorickettsia
           sennetsu str. Miyayama]
          Length = 211

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G IED     ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 39  VVFLTGPIEDGMASLIVAQLLFLEAENPDKDIFMYINSPGGVVTAGLSIYDTMQYIKPSV 98

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +A++  L S A     A   S V               ++           
Sbjct: 99  STVCVGQAASAASLILASGAEGKRFALPHSRVMVHQPSGGVRGQATDMEIHVKE------ 152

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +         +  +       K   L +   + +  
Sbjct: 153 ------------------------ILQLKRMINEIYQKHTGETIKKIETLLERDTFLSPE 188

Query: 217 EAKKVGLIDVVGG 229
           EAKKVG+ID +  
Sbjct: 189 EAKKVGIIDDIIT 201


>gi|332799059|ref|YP_004460558.1| hypothetical protein TepRe1_1105 [Tepidanaerobacter sp. Re1]
 gi|332696794|gb|AEE91251.1| protein of unknown function DUF107 [Tepidanaerobacter sp. Re1]
          Length = 445

 Score = 45.4 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 76/237 (32%), Gaps = 36/237 (15%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVED--NSPHVARIAIRGQIED--SQELIERIERIS 61
           KKI     ++ L+   +      + V+    S +V  + +RG I++  +  +I  I    
Sbjct: 4   KKILITIFLICLIFAPMEQSLAGNTVKALEASEYVYIVPVRGVIDNGLATFIIRGIREAE 63

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
               A ALI  + +PGG   +   I  AI K               +      + A  II
Sbjct: 64  EM-QAKALIFEIDTPGGEVGSAIKISNAILKTS---------IPTVSFINNEATSAGVII 113

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
             +  +++   G        +P  +K                 +  S             
Sbjct: 114 AISSETIMAVPGATIGAAETRPNEEKYISY----------WSSALRSVAEKTGRDPQLVA 163

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG-QEEVWQSL 237
             +     +  V E         L L+ G      EA K+GL+D      ++V Q +
Sbjct: 164 AMADADVVIEGVKEKGK-----ILSLTTG------EAIKLGLVDEQADSLDQVIQRI 209


>gi|237753395|ref|ZP_04583875.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229375662|gb|EEO25753.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 196

 Score = 45.4 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQI+D  +  ++ ++  +  +D    + + ++SPGG   +G +I+  +  VK   
Sbjct: 30  IILLSGQIDDGLASSIVAQLLFLEAEDPEKDIYLYINSPGGVVTSGLSIYDTMNYVKPDI 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L         +   S +     L         ++           
Sbjct: 90  STICIGQAASMGAFLLSCGTKGKRYSLPNSRIMIHQPLGGAQGQATEIE----------- 138

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                              +    +         +++ + N P +K    +D   + +  
Sbjct: 139 -------------------IQAKEILRLKSSLNEILASNTNQPLEKIAKDTDRDFYLSAK 179

Query: 217 EAKKVGLIDVV 227
           EA++ GLID V
Sbjct: 180 EAQEYGLIDSV 190


>gi|28897691|ref|NP_797296.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260898290|ref|ZP_05906786.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus Peru-466]
 gi|308094762|ref|ZP_05891792.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus AN-5034]
 gi|31340006|sp|Q87R80|CLPP_VIBPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|28805904|dbj|BAC59180.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308088425|gb|EFO38120.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus Peru-466]
 gi|308093191|gb|EFO42886.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus AN-5034]
          Length = 200

 Score = 45.4 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 62/197 (31%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 34  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 93

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A+        S V     L  +      +      I ++  
Sbjct: 94  STVCMGQACSMGAFLLAGGAAGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTI-- 151

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L++E    P +            +  
Sbjct: 152 ----------------------------KQKLNNLLAEHTGQPLEVIERDTDRDNFMSAE 183

Query: 217 EAKKVGLIDVVGGQEEV 233
           +A + G++D V      
Sbjct: 184 QAVEYGIVDAVLSHRGA 200


>gi|91793847|ref|YP_563498.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           denitrificans OS217]
 gi|123356647|sp|Q12LA1|CLPP_SHEDO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|91715849|gb|ABE55775.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
           denitrificans OS217]
          Length = 203

 Score = 45.4 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 50/180 (27%), Gaps = 31/180 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +     + + ++SPGGS  AG AI+  +Q +K     +      +  A  
Sbjct: 53  IVAQLLFLESESPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFL 112

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L   A         S V     L      +     + +  + +     K           
Sbjct: 113 LAGGAKGKRHCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILGIKNKLNQML------ 163

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231
                                +E    P +            +  +A   GL+D +    
Sbjct: 164 ---------------------AEHTGQPLEVIERDTDRDNFMSATQAMDYGLVDSLLTSR 202


>gi|153839648|ref|ZP_01992315.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus AQ3810]
 gi|260902813|ref|ZP_05911208.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus AQ4037]
 gi|149746838|gb|EDM57826.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus AQ3810]
 gi|308108649|gb|EFO46189.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus AQ4037]
 gi|328473326|gb|EGF44174.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           parahaemolyticus 10329]
          Length = 208

 Score = 45.4 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 62/197 (31%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A+        S V     L  +      +      I ++  
Sbjct: 102 STVCMGQACSMGAFLLAGGAAGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTI-- 159

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L++E    P +            +  
Sbjct: 160 ----------------------------KQKLNNLLAEHTGQPLEVIERDTDRDNFMSAE 191

Query: 217 EAKKVGLIDVVGGQEEV 233
           +A + G++D V      
Sbjct: 192 QAVEYGIVDAVLSHRGA 208


>gi|311069140|ref|YP_003974063.1| putative membrane bound hydrolase [Bacillus atrophaeus 1942]
 gi|310869657|gb|ADP33132.1| putative membrane bound hydrolase [Bacillus atrophaeus 1942]
          Length = 438

 Score = 45.4 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 6  KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISRDD 64
          KKI     ++SL  L ++       ++ +  +V  I +   +E      + R  + + D+
Sbjct: 4  KKIGIMVALISLFVLFLIGV--QPTIKSSKQNVWVIPVEKTVEKGLATFLARAFQEAEDN 61

Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           A  +I+++++PGG+  +   I   I    
Sbjct: 62 HAKHIILNINTPGGAVESALEIADTINHAD 91


>gi|323495056|ref|ZP_08100145.1| ATP-dependent Clp protease proteolytic subunit [Vibrio brasiliensis
           LMG 20546]
 gi|323310713|gb|EGA63888.1| ATP-dependent Clp protease proteolytic subunit [Vibrio brasiliensis
           LMG 20546]
          Length = 208

 Score = 45.4 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  IIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L  +      +      I ++K 
Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRHVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQ 161

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                              L++E    P +            +  
Sbjct: 162 KLNK------------------------------LLAEHTGQPLEVIERDTDRDNFMSAD 191

Query: 217 EAKKVGLIDVV 227
           +A + GL+D V
Sbjct: 192 QAVEYGLVDSV 202


>gi|332141945|ref|YP_004427683.1| ATP-dependent Clp protease proteolytic subunit [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551967|gb|AEA98685.1| ATP-dependent Clp protease proteolytic subunit [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 209

 Score = 45.4 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 68/200 (34%), Gaps = 34/200 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG AI+  ++ +K   
Sbjct: 38  VIFLVGQVEDHMANLIVAQMLFLEAENPEKDIFLYINSPGGSVTAGMAIYDTMRFIKPDV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A         S V     L  +       +     I S+  
Sbjct: 98  STVCMGQAASMGAFLLSAGAKGKRYCLPNSRVMIHQPLGGFQGQASDFEIHAKEILSI-- 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            RL+++     Y+K           +  
Sbjct: 156 ----------------------------KEKLNRLLADHTGQDYEKVARDTDRDNFLSAT 187

Query: 217 EAKKVGLIDV-VGGQEEVWQ 235
           EAK+ GL+D  +  + +V  
Sbjct: 188 EAKEYGLVDQVLANRSDVAA 207


>gi|295698387|ref|YP_003603042.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
           Riesia pediculicola USDA]
 gi|291157158|gb|ADD79603.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
           Riesia pediculicola USDA]
          Length = 196

 Score = 45.4 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IED+    +I ++  +  ++    + + ++SPGG   +G +I+  IQ +  + 
Sbjct: 29  IIFLTGYIEDNMANLIISQLLFLESENQTKEIYLYINSPGGIITSGISIYDTIQFIMPKV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S A         S +     +  +      ++           
Sbjct: 89  STICIGQACSMGAFLLASGAKGKRYCLPNSRIMIHQPMGSFRGQATDIEIHTKE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +         L+++      ++    ++   + +  
Sbjct: 143 ------------------------IIKLKSKMNELMAKHTGKQVEQIEKDTERDYFLSSE 178

Query: 217 EAKKVGLIDVV 227
           EA   GL+D V
Sbjct: 179 EAVDYGLVDRV 189


>gi|269798318|ref|YP_003312218.1| ATP-dependent Clp protease proteolytic subunit ClpP [Veillonella
           parvula DSM 2008]
 gi|269094947|gb|ACZ24938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           parvula DSM 2008]
          Length = 197

 Score = 45.4 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 59/197 (29%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D  +  +I ++  +  +D    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 28  IIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMQYIKPDV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +       A   + +     L         ++           
Sbjct: 88  STICVGSAASMGAVLLTAGTKGKRYALPHARIMIHQPLGGVQGQASEIEIHARE------ 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +         +++       +            +  
Sbjct: 142 ------------------------ILRMREELNGILASRSGQDIEVVARDTDRDNFMSAQ 177

Query: 217 EAKKVGLIDVVGGQEEV 233
           +A + GLID V  +E V
Sbjct: 178 DAVEYGLIDEVLTRESV 194


>gi|121605153|ref|YP_982482.1| peptidase S14, ClpP [Polaromonas naphthalenivorans CJ2]
 gi|120594122|gb|ABM37561.1| ATP-dependent Clp protease proteolytic subunit ClpP [Polaromonas
           naphthalenivorans CJ2]
          Length = 674

 Score = 45.0 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 64/193 (33%), Gaps = 38/193 (19%)

Query: 41  IAIRGQIEDS--QELIER--IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           I I G I +S  +E +      +   D  ATA+ V ++S GGS   G AI+ A+++ K  
Sbjct: 30  IYIYGDIGESWYEETVSAATFVKELNDIDATAITVRINSIGGSVPDGLAIYNALRRHKAE 89

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
             +      MA S   LI+ A + +  A  +++   G           L  +   + +  
Sbjct: 90  VTIEI--DGMALSVASLIAMAGDKVNMANNAMLMIHGPWSYVSGNSVELRDMADQLDT-- 145

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR--IWT 214
                                                +           +L+DG+   +T
Sbjct: 146 ----------------------------WAAAMSNSYAARTGDQPAMLALLTDGKDHFYT 177

Query: 215 GAEAKKVGLIDVV 227
             +A     +D +
Sbjct: 178 AEQALAEKFVDAI 190


>gi|94312344|ref|YP_585554.1| enoyl-CoA hydratase/isomerase [Cupriavidus metallidurans CH34]
 gi|93356196|gb|ABF10285.1| Enoyl-CoA hydratase [Cupriavidus metallidurans CH34]
          Length = 256

 Score = 45.0 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 63/212 (29%), Gaps = 34/212 (16%)

Query: 36  PHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
            ++A I +     ++        L++ + R + DDS  A+I++ + P    +       +
Sbjct: 10  DNIAEILLDSPPVNALNEAMIDALLQGLRRAAEDDSVRAVILASAVPR--RFCAGLQLDS 67

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           ++     +         +             I A   +  G    L  +  +    D   
Sbjct: 68  LRDAPPSRGYALVEKLYSGLCEAQFHLGKPSIAAVGGTARGGGMTLAIHCDMIVAADTAT 127

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
                +    + A                            R++   R         L  
Sbjct: 128 FGYPEIDVGLVPAIHYTHLP---------------------RIIGRHRAFDL-----LFT 161

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           GR +  AEA  +GL++ V  ++ V +   AL 
Sbjct: 162 GRSFDAAEAMSLGLVNRVVPEQRVMEEARALA 193


>gi|315641411|ref|ZP_07896485.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           italicus DSM 15952]
 gi|315482847|gb|EFU73369.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           italicus DSM 15952]
          Length = 194

 Score = 45.0 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ D     +I ++  +   DS   + + ++SPGGS  AG AI+  +  VK   
Sbjct: 29  IIMLSGQVTDDLANSIISQLLFLDAQDSEKDIYLYINSPGGSVTAGLAIYDTMNFVKADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +       A   + +     L         ++           
Sbjct: 89  QTIVMGMAASMGSFLLTAGKKGKRFALPNAEIMIHQPLGGAQGQATEIEIAAR------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +  +      +++E    P +     +D   + T  
Sbjct: 142 -----------------------HILKTRERLNNILAERTGQPLEVIEKDTDRDNFMTAQ 178

Query: 217 EAKKVGLIDVV 227
           EAK  GLID +
Sbjct: 179 EAKDYGLIDQI 189


>gi|221065471|ref|ZP_03541576.1| Endopeptidase Clp [Comamonas testosteroni KF-1]
 gi|220710494|gb|EED65862.1| Endopeptidase Clp [Comamonas testosteroni KF-1]
          Length = 201

 Score = 45.0 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 63/197 (31%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D+    +  ++  +  ++    + + ++SPGG   +G A++  +Q +K+  
Sbjct: 33  VIFLNGEVNDAVSALVCAQLLFLEAENPDKPIHLYINSPGGVITSGLAMYDTMQFIKSPV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +                     +    S+   + +  + P  +  L    + +     
Sbjct: 93  HTLC--------------------MGTARSMGSFLLMAGE-PGHRMALPNASLHVHQPLG 131

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                      +     RL ++     Y +    L   R  T  
Sbjct: 132 GVQGQASDIRIHAEEMLR---------TKDRVTRLYAQHCGRSYQEVERDLDRDRFMTAK 182

Query: 217 EAKKVGLIDVVGGQEEV 233
           EA++ GLID V  +   
Sbjct: 183 EAREWGLIDKVLDRRTA 199


>gi|331701681|ref|YP_004398640.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           buchneri NRRL B-30929]
 gi|329129024|gb|AEB73577.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           buchneri NRRL B-30929]
          Length = 197

 Score = 45.0 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 60/195 (30%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IED     +I ++  +   DS   + + ++SPGG   +G AI+  +  VK+  
Sbjct: 29  IIMLSGPIEDDMANAIIAQLLFLDAQDSEKDIYLYINSPGGVITSGMAIYDTMNFVKSDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++    S A     A   + V            +  ++           
Sbjct: 89  QTIVMGMAASMASVLASSGAKGKRFALPHAQVLIHQPSGGAQGQQTEIEIAAEE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                                   +  +      L++E+   P +K           T  
Sbjct: 143 ------------------------ILKARKMINNLLAENSGQPIEKINKDTERDNYLTAQ 178

Query: 217 EAKKVGLIDVVGGQE 231
           EA   GL+D +    
Sbjct: 179 EAVDYGLLDGIMTSS 193


>gi|301598440|pdb|3HLN|A Chain A, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598441|pdb|3HLN|B Chain B, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598442|pdb|3HLN|C Chain C, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598443|pdb|3HLN|D Chain D, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598444|pdb|3HLN|E Chain E, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598445|pdb|3HLN|F Chain F, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598446|pdb|3HLN|G Chain G, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598447|pdb|3HLN|H Chain H, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598448|pdb|3HLN|I Chain I, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598449|pdb|3HLN|J Chain J, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598450|pdb|3HLN|K Chain K, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598451|pdb|3HLN|L Chain L, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598452|pdb|3HLN|M Chain M, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598453|pdb|3HLN|N Chain N, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598454|pdb|3HLN|O Chain O, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598455|pdb|3HLN|P Chain P, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598456|pdb|3HLN|Q Chain Q, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598457|pdb|3HLN|R Chain R, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598458|pdb|3HLN|S Chain S, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598459|pdb|3HLN|T Chain T, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598460|pdb|3HLN|U Chain U, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598461|pdb|3HLN|V Chain V, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598462|pdb|3HLN|W Chain W, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598463|pdb|3HLN|X Chain X, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598464|pdb|3HLN|Y Chain Y, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598465|pdb|3HLN|Z Chain Z, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598466|pdb|3HLN|1 Chain 1, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598467|pdb|3HLN|2 Chain 2, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
          Length = 193

 Score = 45.0 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 28  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 88  STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIE----------- 136

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                              +    +         L++       ++        R  +  
Sbjct: 137 -------------------IHCREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAP 177

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 178 EAVEYGLVDSILT 190


>gi|237730414|ref|ZP_04560895.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226905953|gb|EEH91871.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 243

 Score = 45.0 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 78  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 137

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 138 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 191

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  + +
Sbjct: 192 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAS 227

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 228 EAVEYGLVDSILT 240


>gi|270290690|ref|ZP_06196914.1| Clp protease [Pediococcus acidilactici 7_4]
 gi|304386215|ref|ZP_07368548.1| ATP-dependent Clp protease proteolytic subunit [Pediococcus
           acidilactici DSM 20284]
 gi|270280750|gb|EFA26584.1| Clp protease [Pediococcus acidilactici 7_4]
 gi|304327572|gb|EFL94799.1| ATP-dependent Clp protease proteolytic subunit [Pediococcus
           acidilactici DSM 20284]
          Length = 197

 Score = 45.0 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 59/192 (30%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D     +I ++  +   DS   + + ++SPGG   AG AI+  +  +K   
Sbjct: 29  IIMLSGPIDDDLANSIISQLLFLDAQDSEKDIYLYINSPGGVVTAGLAIYDTMNFIKADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++    S       A   S V            +  ++           
Sbjct: 89  QTIVMGMAASMASVLASSGTKGKRFALPHSEVMIHQPSGGAQGQQTEIEIAAEQ------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +  +     ++++E+   P +K           +  
Sbjct: 143 ------------------------ILKTRKELNKILAENSGQPLEKINLDTERDNYLSAQ 178

Query: 217 EAKKVGLIDVVG 228
           +A   GLID + 
Sbjct: 179 DAVDYGLIDGIM 190


>gi|299529913|ref|ZP_07043341.1| ATP-dependent Clp protease proteolytic subunit [Comamonas
           testosteroni S44]
 gi|298722085|gb|EFI63014.1| ATP-dependent Clp protease proteolytic subunit [Comamonas
           testosteroni S44]
          Length = 201

 Score = 45.0 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 63/197 (31%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D+    +  ++  +  ++    + + ++SPGG   +G A++  +Q +K+  
Sbjct: 33  VIFLNGEVNDAVSALVCAQLLFLEAENPDKPIHLYINSPGGVITSGLAMYDTMQFIKSPV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +                     +    S+   + +  + P  +  +    + +     
Sbjct: 93  HTLC--------------------MGTARSMGSFLLMAGE-PGHRMAMPNASLHVHQPLG 131

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                      +     RL ++     Y +    L   R  T  
Sbjct: 132 GVRGQASDIRIHAEEMLR---------TKDRVTRLYAQHCGRSYQEVERDLDRDRFMTAK 182

Query: 217 EAKKVGLIDVVGGQEEV 233
           EA++ GLID V  +   
Sbjct: 183 EAREWGLIDKVLDRRTA 199


>gi|291296198|ref|YP_003507596.1| hypothetical protein Mrub_1818 [Meiothermus ruber DSM 1279]
 gi|290471157|gb|ADD28576.1| protein of unknown function DUF107 [Meiothermus ruber DSM 1279]
          Length = 424

 Score = 45.0 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/277 (12%), Positives = 83/277 (29%), Gaps = 40/277 (14%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-QELIERIERISRDDSATALIVSL 73
           L ++ L V  F+              I I G I+      +E+    +  + A+ ++  +
Sbjct: 4   LLVILLLVASFA--------QARTYIIPIEGTIDGPLATFVEQSLDQAEREGASGVVFRV 55

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           ++PGG   A   I   I                      + + A      +  +L+    
Sbjct: 56  NTPGGRVDAAIRITDRILS------------------STVPTLAVVENAFSAGALISLAA 97

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
                         L V+I  +  +   A+    S +  K   + +     +       +
Sbjct: 98  QQIMMLPGSNIGAALPVTITPIVGNTNAADRKVISALKGKFRAVAEARNRPAN------I 151

Query: 194 SESRNIPYDKTLVLSDGR---IWTGAEAKKVGLID-VVGGQEEVWQSLYALGVDQSIRKI 249
           +E+   P  +   ++        +   A ++ + D  V       +     G +   +++
Sbjct: 152 AEAMVDPEVEVRGITTRGEPLTLSARRAVELKVADAEVASLRAALEKA---GFNTDTQEL 208

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +     +   F     ++   L    + L+ +    G
Sbjct: 209 QPGPQVRVARFLTDPTIAAILLAVGVLGLILEFFTPG 245


>gi|260773194|ref|ZP_05882110.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           metschnikovii CIP 69.14]
 gi|260612333|gb|EEX37536.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           metschnikovii CIP 69.14]
          Length = 208

 Score = 45.0 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 62/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L      +     + +  + + S
Sbjct: 102 STLCVGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLG---GFQGQASDIQIHAQEILS 158

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                              L++E    P D            +  
Sbjct: 159 IKNK---------------------------LNTLLAEHTGQPLDVIERDTDRDNFMSAQ 191

Query: 217 EAKKVGLIDVVGG 229
           +A   G++D +  
Sbjct: 192 QAVDYGIVDAILT 204


>gi|229821079|ref|YP_002882605.1| Endopeptidase Clp [Beutenbergia cavernae DSM 12333]
 gi|229566992|gb|ACQ80843.1| Endopeptidase Clp [Beutenbergia cavernae DSM 12333]
          Length = 213

 Score = 45.0 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 60/182 (32%), Gaps = 31/182 (17%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
           ++ ++  ++  ++ +D    + + ++SPGGS  AG AI+  +Q V+     +      + 
Sbjct: 49  NANQICGQMMLLAAEDPTKDIWLYINSPGGSVTAGMAIYDTMQYVQPDVATVAMGMAASM 108

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
               L S A     A   + V                                       
Sbjct: 109 GQFLLASGAKGKRYATPHARVMMHQPSGGIGG---------------------------- 140

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVV 227
                 +++  +++         L +E      ++    +D  R +T  EA++ G ID V
Sbjct: 141 --TATDIRINAELILHMKRVMAELTAEQTGKTVEQVNADADRDRWFTAEEAREYGFIDHV 198

Query: 228 GG 229
             
Sbjct: 199 VT 200


>gi|221638467|ref|YP_002524729.1| periplasmic serine protease [Rhodobacter sphaeroides KD131]
 gi|221159248|gb|ACM00228.1| Periplasmic serine protease [Rhodobacter sphaeroides KD131]
          Length = 304

 Score = 45.0 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 78/223 (34%), Gaps = 24/223 (10%)

Query: 39  ARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           A + +RG +  +               L E +  ++  + A A+++ + SPGG     EA
Sbjct: 60  AVVPVRGILTPNMAQYERWFGWATYHGLAETLAHLAASEDAAAIVLEIDSPGGLVCGIEA 119

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
              AI      KPV   V  +AASA Y ++  +  IV    ++ GSIGV          +
Sbjct: 120 AAEAIAAAAVVKPVHALVSPLAASAAYWLASQATEIVMTPGAVAGSIGV---ALTAAAHV 176

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204
                  +  + S   A               +Q  +D +   F   VS  R IP  +  
Sbjct: 177 QPGANGAQIFEMSSRHARAKRPDASTEAGRAELQRSLDEAEAAFHAAVSAGRAIPAAELA 236

Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                       G  +   EA + GL D    +   +  L A 
Sbjct: 237 ARLSVTDDPQDGGATFRAPEAIRRGLADRTETRAAFYARLTAR 279


>gi|300856458|ref|YP_003781442.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           ljungdahlii DSM 13528]
 gi|300436573|gb|ADK16340.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           ljungdahlii DSM 13528]
          Length = 194

 Score = 45.0 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 31/191 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + GQ+ D  +  ++ ++  +  D+  + +   ++SPGGS  AG AI+  +Q +++  
Sbjct: 29  IVMLNGQVTDEAASSIVAQLLFLESDNPDSDINFYINSPGGSITAGMAIYDTMQYIRSDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   S      +L   P V   +      I+    
Sbjct: 89  STICVGMAASMGSFLLAAGAKGKRFALPNS-----EILIHQPSVYGGMQGQATDIEI--- 140

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                                   +        RL SE    P +K    +      +  
Sbjct: 141 --------------------HTKWLLGIKKKMNRLYSEMTGKPIEKIEKDVERDYFMSAK 180

Query: 217 EAKKVGLIDVV 227
           EA   GL+D +
Sbjct: 181 EALDYGLVDKI 191


>gi|29654774|ref|NP_820466.1| nfeD family protein [Coxiella burnetii RSA 493]
 gi|29542042|gb|AAO90980.1| non-proteolytic membrane spanning protein, peptidase family S49
           [Coxiella burnetii RSA 493]
          Length = 458

 Score = 45.0 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 73/232 (31%), Gaps = 23/232 (9%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVAR-IAIRGQI--EDSQELIERIERIS 61
            K+I  R   + ++T  ++  +     ++N+  +A  I I+G I    +      +++ +
Sbjct: 4   RKRIFIRCFYILMLTFGLLGIASHIIAQNNTRRLAILIDIKGGIGPATADFFHRSLKQAT 63

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
               A  +I+ L +PGG   A   I + I                 +    +   A +  
Sbjct: 64  E-KKAQVIILQLDTPGGLVTAMRDIIKDILA---------------SPIPVIGYVAPSGA 107

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS---PMKAEPSPFSEVNPKAVQMM 178
            AA                    L                    E    ++  P      
Sbjct: 108 HAASAGTYILYATHIAAMAPGTNLGAATPIAIGTPGGSSPEKGNEKKEGAKKAPAQKTAA 167

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229
           +    S    ++R +++ R    +     + +    +  EA K+ +I+++  
Sbjct: 168 EKKAISDARAYIRSLAQLRGRNVEWAESAVDEAESLSAEEAYKIKVINIIAS 219


>gi|291277236|ref|YP_003517008.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
           mustelae 12198]
 gi|290964430|emb|CBG40280.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
           mustelae 12198]
          Length = 195

 Score = 45.0 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I D  +  ++ ++  +  +D+   +   ++SPGG+  +  +I+  +  ++   
Sbjct: 29  IVLLSGEINDMVASSIVAQLLFLEAEDAQKDIYFYINSPGGAVTSAFSIYDTMHYIRPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +A A  L S A     +   S +     L         ++           
Sbjct: 89  ATICVGQAASAGALLLSSGAKGKRYSLPNSRIMIHQPLGGAQGQATDIE----------- 137

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                              +  + +         +++ +      K           +  
Sbjct: 138 -------------------IQANEILRLKKILNEILASNTGQSLKKVSQDTERDFFMSAM 178

Query: 217 EAKKVGLIDVV 227
           EA+K GL+D V
Sbjct: 179 EAQKYGLVDKV 189


>gi|238751006|ref|ZP_04612502.1| ATP-dependent Clp protease proteolytic subunit [Yersinia rohdei
           ATCC 43380]
 gi|238710696|gb|EEQ02918.1| ATP-dependent Clp protease proteolytic subunit [Yersinia rohdei
           ATCC 43380]
          Length = 207

 Score = 45.0 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 61/196 (31%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  +  ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  IIFLTGQVEDHMANLITAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +      ++           
Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 156 ------------------------ILKVKSRMNELMAHHTGKSLEEIERDTERDRFLSAE 191

Query: 217 EAKKVGLIDVVGGQEE 232
           +A + GL+D V  + +
Sbjct: 192 QAVEYGLVDSVFTRRD 207


>gi|15596998|ref|NP_250492.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa PAO1]
 gi|116049751|ref|YP_791442.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|218892245|ref|YP_002441112.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa LESB58]
 gi|254234895|ref|ZP_04928218.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa C3719]
 gi|254240194|ref|ZP_04933516.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa 2192]
 gi|296389808|ref|ZP_06879283.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa PAb1]
 gi|18203012|sp|Q9I2U1|CLPP1_PSEAE RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|9947784|gb|AAG05190.1|AE004606_4 ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa PAO1]
 gi|115584972|gb|ABJ10987.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126166826|gb|EAZ52337.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa C3719]
 gi|126193572|gb|EAZ57635.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa 2192]
 gi|218772471|emb|CAW28253.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa LESB58]
          Length = 213

 Score = 45.0 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED     ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 45  IIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L   A+        S +     L  +      ++     I  +K 
Sbjct: 105 STTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAKEILFIK- 163

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            ++++     P D         R  +G 
Sbjct: 164 -----------------------------ERLNQILAHHTGQPLDVIARDTDRDRFMSGD 194

Query: 217 EAKKVGLIDVVGGQEEV 233
           EA K GLID V  Q ++
Sbjct: 195 EAVKYGLIDKVMTQRDL 211


>gi|292670226|ref|ZP_06603652.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas noxia
           ATCC 43541]
 gi|292648178|gb|EFF66150.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas noxia
           ATCC 43541]
          Length = 197

 Score = 45.0 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 59/194 (30%), Gaps = 33/194 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+DS    ++ ++  +  +D    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 24  IIFLGGPIDDSVANVVVAQMLFLESEDPDKDIHLYINSPGGVVTAGLAIYDTMQYIKPDV 83

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + +     L                      
Sbjct: 84  STICIGQAASMGSILLTAGAKGKRYALPHARIMIHQPLGGAQGQST-------------- 129

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            +Q+    +         +++        K           +  
Sbjct: 130 ----------------DIQIQAKEILRLREVGNHILARHTGQDEKKINVDTERDNFMSAE 173

Query: 217 EAKKVGLIDVVGGQ 230
           EAK  GLID V  +
Sbjct: 174 EAKAYGLIDEVVTR 187


>gi|221633249|ref|YP_002522474.1| putative protease/transporter [Thermomicrobium roseum DSM 5159]
 gi|221156799|gb|ACM05926.1| putative protease/transporter [Thermomicrobium roseum DSM 5159]
          Length = 469

 Score = 45.0 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 70/234 (29%), Gaps = 31/234 (13%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDS 65
           +++R + L L+ + +     S         V  + I G I    +  +   + + + D  
Sbjct: 7   LRSRCMSLFLMIVGLALLGQSGAAAST--RVYLVEIDGAITPVVASYVDRALRQAA-DQG 63

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
           A A+++ L +PGG + A + I + I               + +    ++  A     AA 
Sbjct: 64  AEAVVIQLDTPGGLSSAMDEIIQDI---------------LQSPVPVIVYVAPEGARAAS 108

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
             +     + +              S   V          P   +  K V      + S 
Sbjct: 109 AGVF----ITYAAHIAAMAPATNIGSASPVLIGQDGQAAQPDDTMQRKVVNDAVAKIRSL 164

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
                      RN  + +   + +    +  +A    ++D+V            
Sbjct: 165 AER------RGRNADWAE-QAVREAVNISAEQAVAQNVVDLVAPSLPALLDAVD 211


>gi|161830099|ref|YP_001597323.1| nfeD family protein [Coxiella burnetii RSA 331]
 gi|161761966|gb|ABX77608.1| nfeD family protein [Coxiella burnetii RSA 331]
          Length = 458

 Score = 45.0 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 73/232 (31%), Gaps = 23/232 (9%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVAR-IAIRGQI--EDSQELIERIERIS 61
            K+I  R   + ++T  ++  +     ++N+  +A  I I+G I    +      +++ +
Sbjct: 4   RKRIFIRCFYILMLTFGLLGIASHIIAQNNTRRLAILIDIKGGIGPATADFFHRSLKQAT 63

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
               A  +I+ L +PGG   A   I + I                 +    +   A +  
Sbjct: 64  E-KKAQVIILQLDTPGGLVTAMRDIIKDILA---------------SPIPVIGYVAPSGA 107

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS---PMKAEPSPFSEVNPKAVQMM 178
            AA                    L                    E    ++  P      
Sbjct: 108 HAASAGTYILYATHIAAMAPGTNLGAATPIAIGTPGGSSPEKGNEKKEGAKKAPAQKTAA 167

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229
           +    S    ++R +++ R    +     + +    +  EA K+ +I+++  
Sbjct: 168 EKKAISDARAYIRSLAQLRGRNVEWAESAVVEAESLSAEEAYKIKVINIIAS 219


>gi|320103932|ref|YP_004179523.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
           pallida ATCC 43644]
 gi|319751214|gb|ADV62974.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
           pallida ATCC 43644]
          Length = 252

 Score = 45.0 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 63/190 (33%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I++  +  LI++   +  ++    +   ++SPGGS Y+  A++  +Q V    
Sbjct: 49  IIFLEGPIDNVIANHLIKQFLYLQFENRTQGISFYINSPGGSVYSTLAVYDTMQFVNCPI 108

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    + +A  L         +   S +                            
Sbjct: 109 ATYCIGMAASGAAVLLAGGTKGKRFSLPHSKIMIHQPSG-------------------YV 149

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
               ++    ++   K  +++ +++          +++               R  T AE
Sbjct: 150 GGQVSDIEIQADEILKNKKLINEILAKHTGQPYERIAK----------DTERDRYLTAAE 199

Query: 218 AKKVGLIDVV 227
           AK+ GL+D V
Sbjct: 200 AKEYGLVDEV 209


>gi|78779795|ref|YP_397907.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9312]
 gi|123969045|ref|YP_001009903.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. AS9601]
 gi|126696838|ref|YP_001091724.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9301]
 gi|157413876|ref|YP_001484742.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9215]
 gi|254526963|ref|ZP_05139015.1| Clp protease [Prochlorococcus marinus str. MIT 9202]
 gi|115311346|sp|Q319H4|CLPP2_PROM9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|78713294|gb|ABB50471.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. MIT 9312]
 gi|123199155|gb|ABM70796.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
           AS9601]
 gi|126543881|gb|ABO18123.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9301]
 gi|157388451|gb|ABV51156.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9215]
 gi|221538387|gb|EEE40840.1| Clp protease [Prochlorococcus marinus str. MIT 9202]
          Length = 203

 Score = 45.0 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 32/189 (16%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            +   I +S  L+ ++  +  DD++  + + ++SPGGS  AG AI+  I+ VK+    I 
Sbjct: 38  EVNDGIANS--LVAQMLYLDSDDNSKPIYLYINSPGGSVTAGLAIYDTIKYVKSDVVTIC 95

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                +  A  L +      VA   S +     L      +    ++             
Sbjct: 96  VGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTSQRQASDIEIEAK---------- 145

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220
                               +          +++     ++K    +D   + +  EAK 
Sbjct: 146 -------------------EILRIKDMLNMSMADMTGQSFEKIEKDTDRDYFLSAEEAKN 186

Query: 221 VGLIDVVGG 229
            GLID V  
Sbjct: 187 YGLIDRVIT 195


>gi|270156951|ref|ZP_06185608.1| ATP-dependent Clp protease proteolytic subunit ClpP [Legionella
           longbeachae D-4968]
 gi|289164625|ref|YP_003454763.1| ATP-dependent Clp protease proteolytic subunit [Legionella
           longbeachae NSW150]
 gi|269988976|gb|EEZ95230.1| ATP-dependent Clp protease proteolytic subunit ClpP [Legionella
           longbeachae D-4968]
 gi|288857798|emb|CBJ11642.1| ATP-dependent Clp protease proteolytic subunit [Legionella
           longbeachae NSW150]
          Length = 212

 Score = 45.0 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 64/196 (32%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED  +  ++ ++  +  ++    + + ++SPGG   AG AI+  IQ +K   
Sbjct: 41  IIFLLGEVEDHMANLVVAQLLFLESENPEKDISLYINSPGGVVTAGLAIYDTIQFIKPDV 100

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +A+A  L + A         S V     L  Y      ++       +V  
Sbjct: 101 STLCIGQAASAAALLLCAGADGKRFCLPNSRVMIHQPLGGYRGQATDIEIHARETLTV-- 158

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                             ++++      D+           +  
Sbjct: 159 ----------------------------RERLNNIMAKHTKKTPDQIMRDTERDNFMSAT 190

Query: 217 EAKKVGLIDVVGGQEE 232
           +A + GLID V    E
Sbjct: 191 QAVEYGLIDKVLYDRE 206


>gi|257456332|ref|ZP_05621529.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
           vincentii ATCC 35580]
 gi|257446418|gb|EEV21464.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
           vincentii ATCC 35580]
          Length = 201

 Score = 45.0 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 56/167 (33%), Gaps = 7/167 (4%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D+    ++ ++  +   +    + + ++SPGGS  AG A++  +Q +    
Sbjct: 34  IIFVDGEITDATADLVVAQLLFLESQNPDKDISLYINSPGGSVTAGLAVYDTMQHIHPNV 93

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL-----DKLGVSI 152
             I      + +A  L   +     A  +S V               +     + L +  
Sbjct: 94  QTICLGQAASMAAVLLAGGSKGKRFALPSSRVMIHQPWGGAQGQASDITIQAREILRLKK 153

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
             ++        +  +              ++  +  V +V + R  
Sbjct: 154 LIIQYCAHHTGKTESAVAEDMERDFFMSAQEACEYGIVDMVMDRRKN 200


>gi|309388894|gb|ADO76774.1| ATP-dependent Clp protease proteolytic subunit ClpP [Halanaerobium
           praevalens DSM 2228]
          Length = 198

 Score = 45.0 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 60/187 (32%), Gaps = 29/187 (15%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  +I ++  +  D+    + + ++SPGGS  A  A++  +Q +K     I      +A 
Sbjct: 41  ANTVIAQLLFLEADNPDKDIYLYINSPGGSVTAALAMYDTMQYIKPDVVTIGMGQAASAG 100

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L + A     A   + V                +     +  +              
Sbjct: 101 ALLLAAGAEGKRYALPYARVMIHQPAGGAQGKATEAEIHIKELMRI-------------- 146

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
                 +++ +++          +++           +      T  EA   GLID V  
Sbjct: 147 -----RELLNEILSQHTGQTAEKIAQ----------DVEKDYFMTAKEAVDYGLIDEVIT 191

Query: 230 QEEVWQS 236
           + E+ + 
Sbjct: 192 RNELNEK 198


>gi|229193795|ref|ZP_04320727.1| Peptidase S14 ClpP [Bacillus cereus ATCC 10876]
 gi|228589678|gb|EEK47565.1| Peptidase S14 ClpP [Bacillus cereus ATCC 10876]
          Length = 241

 Score = 45.0 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 81/243 (33%), Gaps = 49/243 (20%)

Query: 41  IAIRGQIEDS---QEL-IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           I + G I +S   + +    I+R   +     + + ++S GGS + G +I+  +++  ++
Sbjct: 24  IYVYGTIGESWWEESVSANAIKRKLNNVKDGDIHLYINSFGGSVFDGISIYNQLKRHSSK 83

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
             VI  V  +AASA  LI+ A + I+    S++                        +  
Sbjct: 84  --VIVHVDGIAASAASLIAMAGDEIIMPANSMLMVH------------------RASTFA 123

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216
               +      + ++     +    +                   +   +L +    T  
Sbjct: 124 WGNREVFEQQLNALDKIDQSVTNTYMKRFV-----------GERSEMEDLLKNETWLTAE 172

Query: 217 EAKKVGLIDVVGGQEE--------------VWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           E K  GL D +  ++E              + Q   A    ++  +++    PK      
Sbjct: 173 ECKAFGLCDEIADEKEDPNEEPSPEDVKNNLLQKYTAKAGQKTSNQVEGVEEPKKPITNM 232

Query: 263 LKN 265
           + N
Sbjct: 233 MMN 235


>gi|152986423|ref|YP_001348854.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa PA7]
 gi|150961581|gb|ABR83606.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           aeruginosa PA7]
          Length = 213

 Score = 45.0 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 65/196 (33%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED     ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 45  IIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L   A+        S +     L  +      ++     I  +K 
Sbjct: 105 STTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAKEILFIK- 163

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            ++++     P D         R  +G 
Sbjct: 164 -----------------------------ERLNQVLAHHTGQPLDVIARDTDRDRFMSGD 194

Query: 217 EAKKVGLIDVVGGQEE 232
           EA K GLID V  Q +
Sbjct: 195 EAVKYGLIDKVMTQRD 210


>gi|110633522|ref|YP_673730.1| ATP-dependent Clp protease proteolytic subunit [Mesorhizobium sp.
           BNC1]
 gi|116243101|sp|Q11J60|CLPP1_MESSB RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|110284506|gb|ABG62565.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chelativorans
           sp. BNC1]
          Length = 210

 Score = 45.0 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 59/200 (29%), Gaps = 33/200 (16%)

Query: 40  RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G +ED    +   ++  +  ++    + + ++SPGG   +G AI+  +Q ++   
Sbjct: 37  IIFITGPVEDGMATLVCAQLLFLEAENPKKEIALYINSPGGVVTSGMAIYDTMQFIQ--- 93

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                                       ++L            +      +  +  + + 
Sbjct: 94  -------------------------PPVSTLCIGQAASMGSLLLCAGHKDMRFATPNARV 128

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
              +       + +          +         +  +     YD     L      T  
Sbjct: 129 MVHQPSGGFQGQASDIERHAQD--IIKLKRRLNEIYVKHTGQDYDTIERTLDRDHFMTAD 186

Query: 217 EAKKVGLIDVVGGQEEVWQS 236
           EA+  GL+D V  + E  ++
Sbjct: 187 EAQAFGLVDRVISEREAIEA 206


>gi|224013265|ref|XP_002295284.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969007|gb|EED87350.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 198

 Score = 45.0 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 60/186 (32%), Gaps = 33/186 (17%)

Query: 43  IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102
           +  +I +   L+ ++  ++ +D    + + ++SPGGS  AG AI+  +Q V      +  
Sbjct: 29  VDDEIANV--LVAQLLYLANEDPTKDITLYINSPGGSVSAGMAIYDTMQYVPCDVSTVCF 86

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
               +  A  L + A     A   + +     L         ++     I  +       
Sbjct: 87  GMAASMGAFLLGAGAPGKRRALPNARIMIHQPLGGAQGQAADIEIQAKEILFI------- 139

Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKV 221
                                         ++E  + P DK     D   + T  EA   
Sbjct: 140 -----------------------REVLNTYIAEYCDQPKDKIEADCDRDFFMTAEEAVDY 176

Query: 222 GLIDVV 227
           G+ID +
Sbjct: 177 GIIDEM 182


>gi|329767857|ref|ZP_08259372.1| ATP-dependent Clp protease proteolytic subunit [Gemella haemolysans
           M341]
 gi|328838776|gb|EGF88373.1| ATP-dependent Clp protease proteolytic subunit [Gemella haemolysans
           M341]
          Length = 215

 Score = 45.0 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 57/196 (29%), Gaps = 34/196 (17%)

Query: 40  RIAIRGQIEDSQ---ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           RI I G   + Q    +  ++  +   DS   +   ++SPGGS  AG AI+  +Q +K  
Sbjct: 28  RIIILGSDVNDQVANSITSQLLFLEAQDSEKDIYFYINSPGGSVTAGFAIYDTMQHIKCD 87

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
              I      +  A  L +       A   + V     L         ++          
Sbjct: 88  VVTICMGMAASMGAFLLAAGTIGKRYALPNAEVMIHQPLGGAQGQATEIEIAAK------ 141

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTG 215
                                    +  +     +++++                   T 
Sbjct: 142 ------------------------HILRTREKLNKILADRTGQTIKAIERDTERDNYLTA 177

Query: 216 AEAKKVGLIDVVGGQE 231
            EA + GL+D V   E
Sbjct: 178 EEACEYGLVDKVMYPE 193


>gi|226501814|ref|NP_001150578.1| LOC100284211 [Zea mays]
 gi|195640324|gb|ACG39630.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
          Length = 260

 Score = 45.0 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++ A  + + ++SPGG   AG AI+  +Q +++  
Sbjct: 63  IVCIHGPITDDTASLVVAQLLFLESENPAKPVHLYINSPGGVVTAGLAIYDTMQYIRSPV 122

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      + ++  L + AS    A   + V                            
Sbjct: 123 TTLCIGQAASMASLLLAAGASGQRRALPNARVMIHQPSGGASGQ---------------- 166

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +    +        ++ ++      D+    +         
Sbjct: 167 --------------ASDIAIHAKEILKVRDRLNKIYAKHTGQAIDRIEQCMERDMFMDPE 212

Query: 217 EAKKVGLIDVV 227
           EA   GLID V
Sbjct: 213 EAHDWGLIDEV 223


>gi|170760538|ref|YP_001788551.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A3 str. Loch Maree]
 gi|226706446|sp|B1L1D7|CLPP_CLOBM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|169407527|gb|ACA55938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 194

 Score = 45.0 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  ++ D+    ++ ++  +  +D    + + ++SPGGS  +G AI+  +Q +K   
Sbjct: 29  IIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L++ A     A   S V     L      +     +G+  + +  
Sbjct: 89  STICVGMAASMGAFLLVAGAKGKRYALPNSEVMIHQPLG---GFQGQATDIGIHAERILK 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                                S+    P ++           +  
Sbjct: 146 MKKKLNTIL---------------------------SDRTGKPLEQVELDTERDHFLSAE 178

Query: 217 EAKKVGLIDVVGG 229
           EAK+ GLID V  
Sbjct: 179 EAKEYGLIDEVID 191


>gi|300866516|ref|ZP_07111206.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
           sp. PCC 6506]
 gi|300335473|emb|CBN56366.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
           sp. PCC 6506]
          Length = 229

 Score = 45.0 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 65/179 (36%), Gaps = 31/179 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q+V+     I      +  
Sbjct: 64  ADSIVAQLLFLDAEDPEKDIQLYINSPGGSVTAGMAIYDTMQQVRPDVVTICYGLAASMG 123

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  + + A+   ++  +S +     L      +     + +  K +     K        
Sbjct: 124 AFLMAAGAAGKRMSLPSSRIMIHQPLG---GAQGQAVDIEIQAKEILYHKRK-------- 172

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                                 L++     P ++    ++   + + AEAK  GL+D V
Sbjct: 173 -------------------LNELLAHHTGQPLERIEADTERDFFMSAAEAKDYGLVDQV 212


>gi|229104552|ref|ZP_04235218.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-28]
 gi|228678888|gb|EEL33099.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-28]
          Length = 239

 Score = 45.0 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 69/221 (31%), Gaps = 43/221 (19%)

Query: 31  VEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSA 80
               + + A + I G+I            S      ++ +        + + ++SPGGS 
Sbjct: 2   KASANGNTADVFIYGEITKYAWEEYGEVSSITFKNELDELGN--GIETINLYINSPGGSV 59

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           +   AI   +Q+   +  VI+ +  + AS   ++   S+ I+    S++    V   + Y
Sbjct: 60  FETMAIIAMLQRHPAK--VISYIDGIGASCASVLPMISDKIIMYANSML---MVHNAWTY 114

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
                D+L  +   ++                           +       L      + 
Sbjct: 115 ASGNADQLRKAADDIE-------------------------RINKSMVQHYLTRAGDKLD 149

Query: 201 YDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYAL 240
            D    L D   W +  EA + GL D +         L   
Sbjct: 150 EDILKQLLDAETWLSADEAMEYGLCDEIISANNAAACLDEK 190


>gi|256823172|ref|YP_003147135.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kangiella
           koreensis DSM 16069]
 gi|256796711|gb|ACV27367.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kangiella
           koreensis DSM 16069]
          Length = 205

 Score = 45.0 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 58/195 (29%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I   GQ+ED  +  ++ ++  +  D+    + + ++SPGG   AG +I+  +Q ++   
Sbjct: 38  VIFCVGQVEDYMANSIVAQMLFLESDNPDKDIYLYINSPGGVVTAGLSIYDTMQFIRPDV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S +     L  +      +      I  +K 
Sbjct: 98  STVCVGQAASMGALLLTGGAKGKRHTLPNSRMMIHQPLGGFQGQASDIAIHAQEITELKH 157

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             +++       ++           T  
Sbjct: 158 ------------------------------RLNSIMAHHCGKTVEEVERDTDRDNFLTAD 187

Query: 217 EAKKVGLIDVVGGQE 231
           EA + GL+D +    
Sbjct: 188 EAVEYGLVDSIISSR 202


>gi|73542772|ref|YP_297292.1| enoyl-CoA hydratase/isomerase [Ralstonia eutropha JMP134]
 gi|72120185|gb|AAZ62448.1| Enoyl-CoA hydratase/isomerase [Ralstonia eutropha JMP134]
          Length = 262

 Score = 45.0 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 62/235 (26%), Gaps = 40/235 (17%)

Query: 36  PHVARIAI---------RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
             VA I +          G I     L++ + R ++DD+  A+I+  + P    +     
Sbjct: 16  DRVAEILLDSPPVNALNEGMI---DALLDALHRAAKDDAVRAVILGSAVPR--RFCAGLQ 70

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
             A+     ++         +             I A   +  G    L  +  +    D
Sbjct: 71  LDALHGASPQRAYQLVDKLYSGLNEAQFRLGKPSIAAVGGTARGGGMTLAIHCDMIVAAD 130

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
                   +      A                            R++   R         
Sbjct: 131 TATFGYPEIDVGVTPAIHYTHLP---------------------RIIGRHRAFDL----- 164

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
           L  GR +   EA  +GL++ +  + +V     AL      +        +  +  
Sbjct: 165 LFTGRSFGADEAMSLGLVNRIVPEADVMCEARALAQTFCDKSPVVMRMGRTAFLR 219


>gi|56963436|ref|YP_175167.1| hypothetical protein ABC1671 [Bacillus clausii KSM-K16]
 gi|56909679|dbj|BAD64206.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 454

 Score = 45.0 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 3/131 (2%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISRDD 64
           K +K   V   L  + + +   ++  +  +  +  I I   +E   +  +ER    + ++
Sbjct: 3   KWMKFALVSWLLACVLLPFQVLANQADSKNASIYVIPIEQTVERGLEAFLERSFSEAEEN 62

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
            A  +I+++++PGG+  A   I   I       PV   ++  A SAG  I+  ++ I+  
Sbjct: 63  GADHIILNINTPGGAVDAAGHIANIINST--DIPVTAFINSEAISAGAYIALNADEIIMV 120

Query: 125 ETSLVGSIGVL 135
               +GS GV+
Sbjct: 121 PNGQIGSAGVI 131


>gi|145342132|ref|XP_001416147.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
 gi|144576372|gb|ABO94440.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
          Length = 251

 Score = 45.0 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G ++D     ++ ++  +   D    + + ++SPGGS  AG A+F  ++ ++   
Sbjct: 70  IIRLGGAVDDDSCNLIVAQLLWLDAADPTKDITLYVNSPGGSVTAGMAVFDTMRHIRPNV 129

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L S       +   S +     L      +     + +    +  
Sbjct: 130 STVCVGLAASMGAFLLASGHPGKRYSLPNSRIMIHQPLG---GAQGQAADIEIQANEIMH 186

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                               +E    P +  +  +D   + +  
Sbjct: 187 HKSTLNGYL---------------------------AEFTKKPLETVMEDTDRDFFMSAK 219

Query: 217 EAKKVGLIDVV 227
           EA + GLID +
Sbjct: 220 EAVEYGLIDAI 230


>gi|123966708|ref|YP_001011789.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9515]
 gi|123201074|gb|ABM72682.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9515]
          Length = 201

 Score = 45.0 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 64/187 (34%), Gaps = 32/187 (17%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            +   I +S  L+ ++  +  DD+   + + ++SPGGS  AG AI+  I+ VK+    I 
Sbjct: 38  EVNDGIANS--LVAQMLYLDSDDNTKPIYLYINSPGGSVTAGLAIYDTIKYVKSDVVTIC 95

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                +  A  L +      VA   S +     L      +    ++             
Sbjct: 96  VGLAASMGAFLLGAGTKGKRVALPHSRIMIHQPLGGTSQRQASDIEIEAR---------- 145

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220
                               +        + +++     ++K    +D   + +  EAK 
Sbjct: 146 -------------------EILRIKDMLNKSMADMTGQSFEKIEKDTDRDYFLSAEEAKN 186

Query: 221 VGLIDVV 227
            GLID V
Sbjct: 187 YGLIDRV 193


>gi|292493157|ref|YP_003528596.1| hypothetical protein Nhal_3157 [Nitrosococcus halophilus Nc4]
 gi|291581752|gb|ADE16209.1| protein of unknown function DUF107 [Nitrosococcus halophilus Nc4]
          Length = 453

 Score = 44.6 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 69/223 (30%), Gaps = 20/223 (8%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR---DDS 65
           +  +V+  +  L +     +   + +   V  + I+G I  +  +   ++R      D  
Sbjct: 3   RYLWVLGFIACLCIGLSVPAQQNQGSRGTVLLLDIQGVIGPA--VSGYVQRAMERGGDKG 60

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
           A  +I+ + +PGG      A+   I+ +      +                A +   AA 
Sbjct: 61  AALIILRMDTPGGLD---RAMRDIIRDILASPVPVV------------GYVAPSGARAAS 105

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
                              L         + + P   E     E       M +  ++ +
Sbjct: 106 AGTYIMYASHIAAMAPATNLGAATPVQLPMGAPPSPGEGEGKEEGQSSQEAMARKAINDA 165

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
             +   L ++           + +    +  EA ++G+ID+V 
Sbjct: 166 VAYIKGLAAQRGRNAEWAEQAVREAASLSAQEALELGVIDLVA 208


>gi|259047276|ref|ZP_05737677.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Granulicatella adiacens ATCC 49175]
 gi|259036052|gb|EEW37307.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Granulicatella adiacens ATCC 49175]
          Length = 197

 Score = 44.6 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 61/192 (31%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D     +I ++  +   D    + + ++SPGGS  AG AI+  +  +K   
Sbjct: 29  IIMVSGPIQDDMANAIIAQLLFLDAQDPEKDIYMYINSPGGSVTAGLAIYDTMNFIKADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + +     L         ++           
Sbjct: 89  QTIAMGLAASMGSFLLTAGAKGKRYALPNAEILIHQPLGGAQGQATEIEIAARQ------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +  +     +++++       +    +D   + T  
Sbjct: 143 ------------------------ILKTRERLNKILAKQTGQKLSRIEKDTDRDNYMTAQ 178

Query: 217 EAKKVGLIDVVG 228
           EA + GLID + 
Sbjct: 179 EALEYGLIDAIM 190


>gi|241888864|ref|ZP_04776170.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Gemella
           haemolysans ATCC 10379]
 gi|241864540|gb|EER68916.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Gemella
           haemolysans ATCC 10379]
          Length = 215

 Score = 44.6 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 57/196 (29%), Gaps = 34/196 (17%)

Query: 40  RIAIRGQIEDSQ---ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           RI I G   + Q    +  ++  +   DS   +   ++SPGGS  AG AI+  +Q +K  
Sbjct: 28  RIIILGSDVNDQVANSITSQLLFLEAQDSEKDIYFYINSPGGSVTAGFAIYDTMQHIKCD 87

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
              I      +  A  L +       A   + V     L         ++          
Sbjct: 88  VVTICMGMAASMGAFLLAAGTIGKRYALPNAEVMIHQPLGGAQGQATEIEIAAR------ 141

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTG 215
                                    +  +     +++++                   T 
Sbjct: 142 ------------------------HILRTREKLNKILADRTGQTIKTIERDTERDNYLTA 177

Query: 216 AEAKKVGLIDVVGGQE 231
            EA + GL+D V   E
Sbjct: 178 EEACEYGLVDKVMYPE 193


>gi|224368878|ref|YP_002603040.1| ClpP2 [Desulfobacterium autotrophicum HRM2]
 gi|223691595|gb|ACN14878.1| ClpP2 [Desulfobacterium autotrophicum HRM2]
          Length = 499

 Score = 44.6 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 90/297 (30%), Gaps = 20/297 (6%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP-HVARIAIRGQIEDSQELIERIERIS-- 61
              I    ++   + +T       +  E      V  I + G +E    +   +ER    
Sbjct: 11  FLNILWIILLPIFIIVTFQTRVTGTDGEKTDKIKVYEIKVEGPVEPG--MAAFLERALAV 68

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
            D  A   ++ + + GG   +  AI   I  +  +   I  V   A SAG LIS A N +
Sbjct: 69  DDSPAALFVLKMDTFGGRVDSALAIVDLIVNIP-KGRTIAFVVNKAISAGALISLACNDL 127

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
           V  + + +G    +         + +   S    K   +    +    +    V     V
Sbjct: 128 VMKDHTTIGDCAPIMNSSEGPKMMGEKFQSPLRAKFRSLAKRNNYPEALAEAMVSDHIAV 187

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLV---------LSDGRIWT--GAEAKKVGLIDVVGGQ 230
            + +     R +                      +S G + T    EA+++G   +  G 
Sbjct: 188 YEVTEAGQTRYIDSRAYEDLTDDERGAITARKTIISKGELLTMDAIEAERLGFSRMTVGS 247

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
                 +       +   +         +F  L  +S   ++     L  + K  G 
Sbjct: 248 ---VAEMLERMGVSNYEIVSIEESWSETFFRFLTKISPILMVIGLGALYTEIKSPGF 301


>gi|84387735|ref|ZP_00990751.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
           12B01]
 gi|218710174|ref|YP_002417795.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
           LGP32]
 gi|254763809|sp|B7VI00|CLPP_VIBSL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|84377418|gb|EAP94285.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
           12B01]
 gi|218323193|emb|CAV19370.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
           LGP32]
          Length = 208

 Score = 44.6 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  IIFLTGQVEDHMANLVVAQLLFLESENPDKDIYLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L             S V     L  +      +      I ++K 
Sbjct: 102 STVCMGQACSMGAFLLAGGTPGKRHVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQ 161

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                              L++E    P +            +  
Sbjct: 162 KLNK------------------------------LLAEHTGQPLEVVERDTDRDNFMSAD 191

Query: 217 EAKKVGLIDVV 227
           +A + GL+D V
Sbjct: 192 QAVEYGLVDSV 202


>gi|67921362|ref|ZP_00514880.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
 gi|67856474|gb|EAM51715.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
          Length = 200

 Score = 44.6 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 61/179 (34%), Gaps = 29/179 (16%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++  +  +  DD    + + ++SPGGS  AG AI+  +Q +K+    I      +  +  
Sbjct: 47  IVALLLYLDSDDPNKPIYLYINSPGGSVTAGMAIYDTMQYIKSEVITICVGLAASMGSFL 106

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L +      +A   + +     L      +   D    + + +                 
Sbjct: 107 LAAGTPGKRLALPHARIMIHQPLGGTGGRRQATDIEIEANEIL----------------- 149

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQ 230
                             +L+++      +K    +D   + +  EAK+ GLID V  +
Sbjct: 150 -----------RIRAQLNQLLADQCGQSLEKIEKDTDRDYFMSAEEAKEYGLIDKVIDE 197


>gi|157146946|ref|YP_001454265.1| hypothetical protein CKO_02723 [Citrobacter koseri ATCC BAA-895]
 gi|157084151|gb|ABV13829.1| hypothetical protein CKO_02723 [Citrobacter koseri ATCC BAA-895]
          Length = 243

 Score = 44.6 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 78  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 137

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 138 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 191

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  + +
Sbjct: 192 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAS 227

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 228 EAVEYGLVDSILT 240


>gi|153835695|ref|ZP_01988362.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           harveyi HY01]
 gi|156973712|ref|YP_001444619.1| ATP-dependent Clp protease proteolytic subunit [Vibrio harveyi ATCC
           BAA-1116]
 gi|269961045|ref|ZP_06175414.1| ATP-dependent Clp protease proteolytic subunit [Vibrio harveyi
           1DA3]
 gi|226706635|sp|A7MV87|CLPP_VIBHB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|148867676|gb|EDL66952.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           harveyi HY01]
 gi|156525306|gb|ABU70392.1| hypothetical protein VIBHAR_01417 [Vibrio harveyi ATCC BAA-1116]
 gi|269834264|gb|EEZ88354.1| ATP-dependent Clp protease proteolytic subunit [Vibrio harveyi
           1DA3]
          Length = 208

 Score = 44.6 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L  +      +      I ++  
Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTI-- 159

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L++E    P +            +  
Sbjct: 160 ----------------------------KQKLNNLLAEHTGQPLEVIERDTDRDNFMSAD 191

Query: 217 EAKKVGLIDVV 227
           +A + G++D V
Sbjct: 192 QAVEYGIVDAV 202


>gi|172039352|ref|YP_001805853.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. ATCC
           51142]
 gi|171700806|gb|ACB53787.1| ATP-dependent Clp protease, proteolytic subunit [Cyanothece sp.
           ATCC 51142]
          Length = 229

 Score = 44.6 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 63/185 (34%), Gaps = 31/185 (16%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  ++ ++  +  +D    + + ++SPGGS YAG AI+  +Q+++     I      +  
Sbjct: 64  ADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMG 123

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L   A    +A  +S +     L         ++     I  +              
Sbjct: 124 AFLLSGGAKGKRMALPSSRIMIHQPLGGAQGQAVEIEIQAKEILYI-------------- 169

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228
                                 +++E    P +     ++   + +  EA   GLID V 
Sbjct: 170 ----------------KKRLNDMLAEHTGQPLETIAADTERDFFMSAQEAVDYGLIDQVI 213

Query: 229 GQEEV 233
            + ++
Sbjct: 214 SRPDL 218


>gi|62126693|gb|AAX64396.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease,
           heat shock protein F215 [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
          Length = 246

 Score = 44.6 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 81  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 140

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 141 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 194

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 195 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAP 230

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 231 EAVEYGLVDSILT 243


>gi|238764860|ref|ZP_04625801.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           kristensenii ATCC 33638]
 gi|238696967|gb|EEP89743.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           kristensenii ATCC 33638]
          Length = 207

 Score = 44.6 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 61/196 (31%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  +  ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  IIFLTGQVEDHMANLITAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +      ++           
Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHARE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 156 ------------------------ILKVKSRMNELMALHTGKSLEEIERDTERDRFLSAE 191

Query: 217 EAKKVGLIDVVGGQEE 232
           +A + GL+D V  + +
Sbjct: 192 QAVEYGLVDSVFTRRD 207


>gi|238788008|ref|ZP_04631804.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           frederiksenii ATCC 33641]
 gi|238723956|gb|EEQ15600.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           frederiksenii ATCC 33641]
          Length = 194

 Score = 44.6 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 61/196 (31%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  +  ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 29  IIFLTGQVEDHMANLITAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +      ++           
Sbjct: 89  STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 143 ------------------------ILKVKSRMNELMAHHTGKSLEEIERDTERDRFLSAE 178

Query: 217 EAKKVGLIDVVGGQEE 232
           +A + GL+D V  + +
Sbjct: 179 QAVEYGLVDSVFTRRD 194


>gi|212212151|ref|YP_002303087.1| non-proteolytic membrane spanning protein, peptidase family S49
           [Coxiella burnetii CbuG_Q212]
 gi|212010561|gb|ACJ17942.1| non-proteolytic membrane spanning protein, peptidase family S49
           [Coxiella burnetii CbuG_Q212]
          Length = 458

 Score = 44.6 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 73/232 (31%), Gaps = 23/232 (9%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVAR-IAIRGQI--EDSQELIERIERIS 61
            K+I  R   + + T  ++  +     ++N+  +A  I I+G I    +      +++ +
Sbjct: 4   RKRIFIRCFYILIFTFGLLGIASHIIAQNNTRRLAILIDIKGGIGPATADFFHRSLKQAT 63

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
               A  +I+ L +PGG A A   I + I                 +    +   A +  
Sbjct: 64  E-KKAQVIILQLDTPGGLATAMRDIIKDILA---------------SPIPVIGYVAPSGA 107

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS---PMKAEPSPFSEVNPKAVQMM 178
            AA                    L                    E    ++  P      
Sbjct: 108 HAASAGTYVLYATHIAAMAPGTNLGAATPIAIGTPGGSSPEKGNEKKEGAKKAPAQKTAA 167

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229
           +    S    ++R +++ R    +     + +    +  EA K+ +I+++  
Sbjct: 168 EKKAISDARAYIRSLAQLRGRNVEWAESAVVEAESLSAEEAYKIKVINIIAS 219


>gi|163746712|ref|ZP_02154069.1| Endopeptidase Clp [Oceanibulbus indolifex HEL-45]
 gi|161379826|gb|EDQ04238.1| Endopeptidase Clp [Oceanibulbus indolifex HEL-45]
          Length = 218

 Score = 44.6 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 72/211 (34%), Gaps = 33/211 (15%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I       ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K + 
Sbjct: 38  IIFVNGPIHSGMSHLVVAQLLHLEAENPTKEISMYINSPGGEVTAGLSIYDTMQYIKPKV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                           + C     + +  ++ G  G+ F  P  +  + +     + +  
Sbjct: 98  ST--------------LICGMAASMGSVIAIGGEKGMRFALPNAEVMIHQPSGGSQGMA- 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                          + + +    ++ +     +L  +    P D      D  +W T  
Sbjct: 143 ---------------EDILISARHIERTRERMYQLYVKHSGQPLDVVQKALDRDLWMTPE 187

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           EAK+ G +D +       +   A    +  +
Sbjct: 188 EAKEWGHLDEIVESRGKAEDAAATAKGKKDK 218


>gi|146282418|ref|YP_001172571.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           stutzeri A1501]
 gi|145570623|gb|ABP79729.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           stutzeri A1501]
          Length = 206

 Score = 44.6 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 68/196 (34%), Gaps = 31/196 (15%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED     ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 38  VIFMVGQVEDYMANLIVAQLLFLEAENPEKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A+        S +     L  +      ++     I ++  
Sbjct: 98  STICIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAREILTI-- 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                             + +  V+       + +++                   +G E
Sbjct: 156 -----------------RERLNKVLAHHTGQPMDVIA----------RDTDRDNFMSGEE 188

Query: 218 AKKVGLIDVVGGQEEV 233
           A K GLID V  Q ++
Sbjct: 189 AVKYGLIDQVLTQRQL 204


>gi|317407024|gb|EFV87052.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
           xylosoxidans C54]
          Length = 201

 Score = 44.6 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 62/197 (31%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D+    +  ++  +  ++    + + ++SPGG   +G A++  +Q +K+  
Sbjct: 33  IIFLSGEVNDAVSALVCAQLLFLEAENPGKPIHMYINSPGGVITSGLAMYDTMQFIKSPV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +                     +    S+   + +  + P  +  L    + +     
Sbjct: 93  HTLC--------------------MGTARSMGSFLLMAGE-PGKRAALANASLHVHQPLG 131

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                      +    +RL +E     Y+     L   R  T  
Sbjct: 132 GFQGQASDMLIHAEEMQR---------TKQRIIRLYAEHCGRSYEDVERSLDRDRYMTAE 182

Query: 217 EAKKVGLIDVVGGQEEV 233
           EA + GLID V      
Sbjct: 183 EAVEWGLIDHVMDARSA 199


>gi|313892932|ref|ZP_07826509.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442285|gb|EFR60700.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 197

 Score = 44.6 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 58/195 (29%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D  +  +I ++  +  +D    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 28  IIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMQYIKPDV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +       A   + V     L         ++           
Sbjct: 88  STICVGSAASMGAVLLTAGTKGKRYALPHARVMIHQPLGGVQGQASEIEIHARE------ 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +         +++       +            +  
Sbjct: 142 ------------------------ILRMREELNGILASRSGQDIEVVARDTDRDNFMSAQ 177

Query: 217 EAKKVGLIDVVGGQE 231
           +A + GLID V  +E
Sbjct: 178 DAVEYGLIDEVLTRE 192


>gi|115459516|ref|NP_001053358.1| Os04g0525600 [Oryza sativa Japonica Group]
 gi|113564929|dbj|BAF15272.1| Os04g0525600 [Oryza sativa Japonica Group]
 gi|215768496|dbj|BAH00725.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 309

 Score = 44.6 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 58/190 (30%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++ A  + + ++SPGG   AG AI+  +Q +++  
Sbjct: 112 IVCIHGPITDDTASLVVAQLLFLESENPAKPVHLYINSPGGVVTAGLAIYDTMQYIRSPV 171

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      + ++  L + A     A   + V               +      I     
Sbjct: 172 TTLCIGQAASMASLLLAAGARGERRALPNARVMIHQPSGGASGQASDIAIHAKEI----- 226

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                       +  +          +S           R++  D              E
Sbjct: 227 ------------LKVRDRLNKIYAKHTSQAIDRIEQCMERDMFMD------------PEE 262

Query: 218 AKKVGLIDVV 227
           A   GLID V
Sbjct: 263 AHDWGLIDEV 272


>gi|38344435|emb|CAE05641.2| OSJNBa0038O10.7 [Oryza sativa Japonica Group]
 gi|116310954|emb|CAH67891.1| OSIGBa0153E02-OSIGBa0093I20.20 [Oryza sativa Indica Group]
 gi|125549084|gb|EAY94906.1| hypothetical protein OsI_16707 [Oryza sativa Indica Group]
          Length = 259

 Score = 44.6 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 58/190 (30%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++ A  + + ++SPGG   AG AI+  +Q +++  
Sbjct: 62  IVCIHGPITDDTASLVVAQLLFLESENPAKPVHLYINSPGGVVTAGLAIYDTMQYIRSPV 121

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      + ++  L + A     A   + V               +      I     
Sbjct: 122 TTLCIGQAASMASLLLAAGARGERRALPNARVMIHQPSGGASGQASDIAIHAKEI----- 176

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                       +  +          +S           R++  D              E
Sbjct: 177 ------------LKVRDRLNKIYAKHTSQAIDRIEQCMERDMFMD------------PEE 212

Query: 218 AKKVGLIDVV 227
           A   GLID V
Sbjct: 213 AHDWGLIDEV 222


>gi|208434705|ref|YP_002266371.1| ATP-dependent clp protease proteolytic component [Helicobacter
           pylori G27]
 gi|210134994|ref|YP_002301433.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           P12]
 gi|217032887|ref|ZP_03438364.1| hypothetical protein HPB128_152g4 [Helicobacter pylori B128]
 gi|298736497|ref|YP_003729023.1| ATP-dependent Clp protease, protease subunit [Helicobacter pylori
           B8]
 gi|116243140|sp|Q1CT76|CLPP_HELPH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706454|sp|B5Z7F6|CLPP_HELPG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|208432634|gb|ACI27505.1| ATP-dependent clp protease proteolytic component [Helicobacter
           pylori G27]
 gi|210132962|gb|ACJ07953.1| ATP-dependent clp protease proteolytic component [Helicobacter
           pylori P12]
 gi|216945381|gb|EEC24049.1| hypothetical protein HPB128_152g4 [Helicobacter pylori B128]
 gi|298355687|emb|CBI66559.1| ATP-dependent Clp protease, protease subunit [Helicobacter pylori
           B8]
 gi|317009196|gb|ADU79776.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           India7]
 gi|317011009|gb|ADU84756.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           SouthAfrica7]
 gi|317012604|gb|ADU83212.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           Lithuania75]
 gi|317178846|dbj|BAJ56634.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           F30]
 gi|332673403|gb|AEE70220.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           83]
          Length = 195

 Score = 44.6 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I DS    ++ ++  +  +D    + + ++SPGG   +G +I+  +  ++   
Sbjct: 29  IVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     +   S +     L         ++ +         
Sbjct: 89  STICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +         +++++     ++    +D   + +  
Sbjct: 143 ------------------------ILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAK 178

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 179 EAKEYGLIDKV 189


>gi|15611797|ref|NP_223448.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           J99]
 gi|308184578|ref|YP_003928711.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           SJM180]
 gi|6685330|sp|Q9ZL50|CLPP_HELPJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|4155294|gb|AAD06311.1| ATP-DEPENDENT PROTEASE, PROTEOLYTIC SUBUNIT [Helicobacter pylori
           J99]
 gi|308060498|gb|ADO02394.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           SJM180]
 gi|317014204|gb|ADU81640.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           Gambia94/24]
 gi|325996073|gb|ADZ51478.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           2018]
 gi|325997669|gb|ADZ49877.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           2017]
          Length = 195

 Score = 44.6 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I DS    ++ ++  +  +D    + + ++SPGG   +G +I+  +  ++   
Sbjct: 29  IVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     +   S +     L         ++ +         
Sbjct: 89  STICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +         +++++     ++    +D   + +  
Sbjct: 143 ------------------------ILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAK 178

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 179 EAKEYGLIDKV 189


>gi|9633042|ref|NP_050150.1| ClpP-like protease [Lactobacillus phage phiadh]
 gi|5730299|emb|CAB52520.1| ClpP-like protease [Lactobacillus phage phiadh]
          Length = 242

 Score = 44.6 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 74/241 (30%), Gaps = 44/241 (18%)

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114
           + I++   + + + + + ++SPGG   AG  I+ A+++            ++ A      
Sbjct: 33  KAIKQALNEANGSDVTLEINSPGGYVDAGSEIYTALKE---------YQGQVIAKITGQA 83

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
             A++ I  A   +  S                      ++         S  + +N   
Sbjct: 84  CSAASWIALAADRIEMSPTAQMMIHRAS-----------TISIGNSDDLASDLNALNSLD 132

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEV 233
                         FV L S+   +   +   L     W    EA   G  D +  Q + 
Sbjct: 133 K------------SFVDLYSQRTGLDAQEVYRLMCNTTWMNAKEAVDKGFADEIMFQNDK 180

Query: 234 WQSLYALGVD-----QSIRKIKDWNPPKN------YWFCDLKNLSISSLLEDTIPLMKQT 282
             +L             I KIK+    K+            +N    S L++ + ++   
Sbjct: 181 KPALVNADGSLSVKPDMINKIKNLLHKKSTENVVKPLQPTQENKKTDSQLQEKLAILFGK 240

Query: 283 K 283
           +
Sbjct: 241 E 241


>gi|148381180|ref|YP_001255721.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933152|ref|YP_001385555.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A str. ATCC 19397]
 gi|153934525|ref|YP_001388961.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A str. Hall]
 gi|153939192|ref|YP_001392582.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum F str. Langeland]
 gi|168179119|ref|ZP_02613783.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum NCTC 2916]
 gi|168183548|ref|ZP_02618212.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum Bf]
 gi|170754567|ref|YP_001782870.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum B1 str. Okra]
 gi|226950659|ref|YP_002805750.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A2 str. Kyoto]
 gi|237796687|ref|YP_002864239.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum Ba4 str. 657]
 gi|166201814|sp|A7FYI2|CLPP_CLOB1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201815|sp|A5I6W1|CLPP_CLOBH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201816|sp|A7GIH2|CLPP_CLOBL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706445|sp|B1IND7|CLPP_CLOBK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763786|sp|C1FLA6|CLPP_CLOBJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|148290664|emb|CAL84793.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           botulinum A str. ATCC 3502]
 gi|152929196|gb|ABS34696.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A str. ATCC 19397]
 gi|152930439|gb|ABS35938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A str. Hall]
 gi|152935088|gb|ABS40586.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum F str. Langeland]
 gi|169119779|gb|ACA43615.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum B1 str. Okra]
 gi|182670165|gb|EDT82141.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum NCTC 2916]
 gi|182673367|gb|EDT85328.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum Bf]
 gi|226842960|gb|ACO85626.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A2 str. Kyoto]
 gi|229261301|gb|ACQ52334.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum Ba4 str. 657]
 gi|295320566|gb|ADG00944.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum F str. 230613]
 gi|322807545|emb|CBZ05120.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           botulinum H04402 065]
          Length = 194

 Score = 44.6 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  ++ D+    ++ ++  +  +D    + + ++SPGGS  +G AI+  +Q +K   
Sbjct: 29  IIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   S V     L      +     +G+  + +  
Sbjct: 89  STICVGMAASMGAFLLAAGAKGKRYALPNSEVMIHQPLG---GFRGQATDIGIHAERILK 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                                S+    P ++           +  
Sbjct: 146 MKKKLNTIL---------------------------SDRTGKPLEQVELDTERDHFLSAE 178

Query: 217 EAKKVGLIDVVGG 229
           EAK+ GLID V  
Sbjct: 179 EAKEYGLIDEVID 191


>gi|85704731|ref|ZP_01035832.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp.
           217]
 gi|85670549|gb|EAQ25409.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp.
           217]
          Length = 210

 Score = 44.6 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 56/203 (27%), Gaps = 33/203 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++ +  + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 38  IIFLSGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +    +  +   S V        Y                   
Sbjct: 98  STLVVGQAASMGSLLLTAGEPGMRFSLPNSRVMVHQPSGGYQGQ---------------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +              +          K    L      +  
Sbjct: 142 --------------ATDIMIHARETQKLKDRLNEIYVRHTGQTLKKVEEALERDNFMSPD 187

Query: 217 EAKKVGLIDVVGGQEEVWQSLYA 239
           EAK  GLID +    +       
Sbjct: 188 EAKAWGLIDEIVANRDKVDEAKK 210


>gi|326626794|gb|EGE33137.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 246

 Score = 44.6 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 81  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 140

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 141 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 194

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 195 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAP 230

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 231 EAVEYGLVDSILT 243


>gi|33861870|ref|NP_893431.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|67460515|sp|Q7V0F1|CLPP2_PROMP RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|33640238|emb|CAE19773.1| Clp protease proteolytic subunit [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 201

 Score = 44.6 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 63/187 (33%), Gaps = 32/187 (17%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            +   I +S  L+ ++  +  DD+   + + ++SPGGS  AG AI+  I+ VK+    I 
Sbjct: 38  EVNDGIANS--LVAQMLYLDSDDNTKPIYLYINSPGGSVTAGLAIYDTIKYVKSDVVTIC 95

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                +  A  L +      VA   S +     L      +    ++             
Sbjct: 96  VGLAASMGAFLLGAGTKGKRVALPHSRIMIHQPLGGTSQRQASDIEIEAR---------- 145

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220
                               +          +S+     ++K    +D   + +  EAK 
Sbjct: 146 -------------------EILRIKDMLNHSMSDMTGQSFEKIEKDTDRDYFLSAEEAKN 186

Query: 221 VGLIDVV 227
            GLID V
Sbjct: 187 YGLIDRV 193


>gi|107101233|ref|ZP_01365151.1| hypothetical protein PaerPA_01002266 [Pseudomonas aeruginosa PACS2]
          Length = 192

 Score = 44.6 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED     ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 24  IIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 83

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L   A+        S +     L  +      ++     I  +K 
Sbjct: 84  STTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAKEILFIK- 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            ++++     P D         R  +G 
Sbjct: 143 -----------------------------ERLNQILAHHTGQPLDVIARDTDRDRFMSGD 173

Query: 217 EAKKVGLIDVVGGQEEV 233
           EA K GLID V  Q ++
Sbjct: 174 EAVKYGLIDKVMTQRDL 190


>gi|238759262|ref|ZP_04620429.1| ATP-dependent Clp protease proteolytic subunit [Yersinia aldovae
           ATCC 35236]
 gi|238702549|gb|EEP95099.1| ATP-dependent Clp protease proteolytic subunit [Yersinia aldovae
           ATCC 35236]
          Length = 194

 Score = 44.6 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 61/196 (31%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  +  ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 29  IIFLTGQVEDHMANLITAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +      ++           
Sbjct: 89  STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 143 ------------------------ILKVKSRMNELMAHHTGKSLEEIERDTERDRFLSAQ 178

Query: 217 EAKKVGLIDVVGGQEE 232
           +A + GL+D V  + +
Sbjct: 179 QAVEYGLVDSVFTRRD 194


>gi|289207758|ref|YP_003459824.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thioalkalivibrio sp. K90mix]
 gi|288943389|gb|ADC71088.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thioalkalivibrio sp. K90mix]
          Length = 224

 Score = 44.6 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 64/210 (30%), Gaps = 33/210 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I   G +ED  +  ++ ++  +  ++    + + ++SPGG+  AG AI+  +Q +K + 
Sbjct: 44  VIFCVGPVEDYMANVIVAQLLFLESENPDKEISLYINSPGGAVTAGMAIYDTMQFIKPQV 103

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A     +   S V     L  +      +D     I  +  
Sbjct: 104 STLCVGQAASMGAVLLAGGAPGKRYSLPHSRVMIHQPLGGFQGQASDIDIHAREILKI-- 161

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                            R+++       ++        R  T  
Sbjct: 162 ----------------------------REELNRVLAHHTGQTVEQVEQDTDRDRFMTAV 193

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
           EAK  GL+D V        +       +  
Sbjct: 194 EAKDYGLVDNVLSSRGAPAAGDKDAGKKDK 223


>gi|146310565|ref|YP_001175639.1| ATP-dependent Clp protease proteolytic subunit [Enterobacter sp.
           638]
 gi|145317441|gb|ABP59588.1| ATP-dependent Clp protease proteolytic subunit ClpP [Enterobacter
           sp. 638]
          Length = 207

 Score = 44.6 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 102 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  + +
Sbjct: 156 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAS 191

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 192 EAVEYGLVDSILT 204


>gi|86148885|ref|ZP_01067136.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. MED222]
 gi|85833328|gb|EAQ51535.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. MED222]
          Length = 198

 Score = 44.6 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 32  IIFLTGQVEDHMANLVVAQLLFLESENPDKDIYLYINSPGGSVTAGMSIYDTMQFIKPNV 91

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L             S V     L  +      +      I ++K 
Sbjct: 92  STVCMGQACSMGAFLLAGGTPGKRHVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQ 151

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                              L++E    P +            +  
Sbjct: 152 KLNK------------------------------LLAEHTGQPLEVVERDTDRDNFMSAD 181

Query: 217 EAKKVGLIDVV 227
           +A + GL+D V
Sbjct: 182 QAVEYGLVDSV 192


>gi|188527362|ref|YP_001910049.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           Shi470]
 gi|217034159|ref|ZP_03439579.1| hypothetical protein HP9810_868g52 [Helicobacter pylori 98-10]
 gi|308182950|ref|YP_003927077.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           PeCan4]
 gi|226706455|sp|B2UT37|CLPP_HELPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|188143602|gb|ACD48019.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           Shi470]
 gi|216943443|gb|EEC22899.1| hypothetical protein HP9810_868g52 [Helicobacter pylori 98-10]
 gi|261839391|gb|ACX99156.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           52]
 gi|297379992|gb|ADI34879.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Helicobacter
           pylori v225d]
 gi|308062114|gb|ADO04002.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           Cuz20]
 gi|308063422|gb|ADO05309.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           Sat464]
 gi|308065135|gb|ADO07027.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           PeCan4]
 gi|315586542|gb|ADU40923.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           35A]
 gi|317177376|dbj|BAJ55165.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           F16]
 gi|317180557|dbj|BAJ58343.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           F32]
 gi|317182104|dbj|BAJ59888.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           F57]
          Length = 195

 Score = 44.6 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I DS    ++ ++  +  +D    + + ++SPGG   +G +I+  +  ++   
Sbjct: 29  IVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     +   S +     L         ++ +         
Sbjct: 89  STICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +         +++++     ++    +D   + +  
Sbjct: 143 ------------------------ILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAK 178

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 179 EAKEYGLIDKV 189


>gi|241696180|ref|XP_002411835.1| ATP-dependent Clp protease, proteolytic subunit, putative [Ixodes
           scapularis]
 gi|215504758|gb|EEC14252.1| ATP-dependent Clp protease, proteolytic subunit, putative [Ixodes
           scapularis]
          Length = 235

 Score = 44.6 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 60/189 (31%), Gaps = 33/189 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G I D  S  ++ ++  +  + +   + + ++SPGGS  AG  I+  +Q +    
Sbjct: 61  IVCVMGPITDELSSLVVAQLLFLQSESNKKPVHMYINSPGGSVTAGLGIYDTMQYIMPPI 120

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +A +  L +  + +  +   S +       Q          + +  + +  
Sbjct: 121 STWCIGQACSAGSLLLCAGTAGMRHSLPHSRIMIHQPSGQA---SGQATDIQIHAEEILH 177

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             + ++    P +     +   R  +  
Sbjct: 178 LK---------------------------RVINGMYAKHTKQPLETIESAMERDRFMSAE 210

Query: 217 EAKKVGLID 225
           +AK+ G+ID
Sbjct: 211 QAKEFGIID 219


>gi|16332068|ref|NP_442796.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
           PCC 6803]
 gi|2493737|sp|Q59993|CLPP2_SYNY3 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|1001377|dbj|BAA10867.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
           PCC 6803]
          Length = 226

 Score = 44.6 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 61/179 (34%), Gaps = 31/179 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  ++ ++  +  +D    + + ++SPGGS YAG AI+  +Q+++     I      +  
Sbjct: 61  ADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMG 120

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L        +A  +S +     L         ++     I  +              
Sbjct: 121 AFLLSGGCKGKRMALPSSRIMIHQPLGGAQGQAVEIEIQAREILYI-------------- 166

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                                 ++ E    P +K    ++   + +  EAK+ GLID V
Sbjct: 167 ----------------KDRLNTMLVEHTGQPMEKLQEDTERDFFMSAEEAKEYGLIDQV 209


>gi|206578475|ref|YP_002240083.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Klebsiella
           pneumoniae 342]
 gi|238893386|ref|YP_002918120.1| ATP-dependent Clp protease proteolytic subunit [Klebsiella
           pneumoniae NTUH-K2044]
 gi|288936834|ref|YP_003440893.1| ATP-dependent Clp protease proteolytic subunit ClpP [Klebsiella
           variicola At-22]
 gi|290510110|ref|ZP_06549480.1| Clp protease [Klebsiella sp. 1_1_55]
 gi|206567533|gb|ACI09309.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Klebsiella
           pneumoniae 342]
 gi|238545702|dbj|BAH62053.1| ATP-dependent Clp protease proteolytic subunit [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|288891543|gb|ADC59861.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Klebsiella
           variicola At-22]
 gi|289776826|gb|EFD84824.1| Clp protease [Klebsiella sp. 1_1_55]
          Length = 207

 Score = 44.6 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 102 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  + A
Sbjct: 156 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAA 191

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 192 EAVEYGLVDSILT 204


>gi|170755513|ref|YP_001782120.1| putative Clp protease [Clostridium botulinum B1 str. Okra]
 gi|169120725|gb|ACA44561.1| putative Clp protease [Clostridium botulinum B1 str. Okra]
          Length = 252

 Score = 44.6 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 66/219 (30%), Gaps = 37/219 (16%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRD----DSATALIVSLSSPGGS 79
            W       + ++    I G I      +     +    D         L + ++SPGGS
Sbjct: 6   FWEVKNSSENENIGETYIYGDIVSYKWDDTDTTAKSFKEDLDSLGDIDTLNIYINSPGGS 65

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
            + G AI+  I++ K +      V  +AAS   +I+ A + I   + S++          
Sbjct: 66  VFQGTAIYNIIKRHKAKIN--IHVDGVAASIASVIAMAGDTIFMPKNSMMMIHN------ 117

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                                      +   N    Q               L      +
Sbjct: 118 ----------------------PWTFAWGNANELRKQADDLDKIRESLIEAYLSKAGDKL 155

Query: 200 PYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSL 237
             +  + + D   W T  E    GL D +  ++E+  S+
Sbjct: 156 SRETLIEIMDNETWLTAQECYDYGLCDELVEEKEIAASI 194


>gi|283955378|ref|ZP_06372877.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283793138|gb|EFC31908.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 194

 Score = 44.6 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  ++ ++  +  +D A  + + ++SPGG   +G +I+  +  +K   
Sbjct: 28  IIMLSGEIHDELASSIVAQLLFLEAEDPAKDIYLYINSPGGVITSGFSIYDTMNYIKPNV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     A   S +     L         ++           
Sbjct: 88  CTICIGQAASMGAFLLSCGAEGKRFALPNSRIMIHQPLGGARGQATDIE----------- 136

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                              +    +         +++++      K    ++   + +  
Sbjct: 137 -------------------IQAKEILRLKTILNDILAKNTKQKVAKIAKDTERDFFMSAQ 177

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 178 EAKEYGLIDKV 188


>gi|327480673|gb|AEA83983.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           stutzeri DSM 4166]
          Length = 192

 Score = 44.6 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 68/196 (34%), Gaps = 31/196 (15%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED     ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 24  VIFMVGQVEDYMANLIVAQLLFLEAENPEKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 83

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A+        S +     L  +      ++     I ++  
Sbjct: 84  STICIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAREILTI-- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                             + +  V+       + +++                   +G E
Sbjct: 142 -----------------RERLNKVLAHHTGQPMDVIA----------RDTDRDNFMSGEE 174

Query: 218 AKKVGLIDVVGGQEEV 233
           A K GLID V  Q ++
Sbjct: 175 AVKYGLIDQVLTQRQL 190


>gi|242281287|ref|YP_002993416.1| hypothetical protein Desal_3832 [Desulfovibrio salexigens DSM 2638]
 gi|242124181|gb|ACS81877.1| protein of unknown function DUF107 [Desulfovibrio salexigens DSM
           2638]
          Length = 436

 Score = 44.6 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 75/244 (30%), Gaps = 38/244 (15%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR---DDSATA 68
           ++  S++            +     +V  + I+G I  +Q  +  +E       DD+   
Sbjct: 10  FIYCSIIIAMFFLCLPVESLFAKEVNVLSLEIQGSISPAQ--VHLLEDALEQAGDDNHDL 67

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           +++ L +PGG   +   +   ++ + N K  I        +                  +
Sbjct: 68  VLLRLDTPGGLGTS---MRELVKIIMNSKIPICVWVGPEGAHAASAGTF----------I 114

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
             +  V    P                         SP S    +  + M   V      
Sbjct: 115 TAAAQVAAMSPGTSIGAA------------------SPVSSSGDELPETMSKKVTGDMVS 156

Query: 189 FVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSI 246
            ++ ++  R          + DG      +A  + ++D +    ++  + L A GV    
Sbjct: 157 LIKGIARKRGRNIGWYAKSVQDGVSVDAQDAVTLNIVDFMALSVDDFLEQLGARGVLIDG 216

Query: 247 RKIK 250
           +K+K
Sbjct: 217 KKVK 220


>gi|163731525|ref|ZP_02138972.1| Clp protease, putative [Roseobacter litoralis Och 149]
 gi|161394979|gb|EDQ19301.1| Clp protease, putative [Roseobacter litoralis Och 149]
          Length = 208

 Score = 44.6 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 57/191 (29%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  D+ A  + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 37  IIFLNGPVHDGMSSLIVAQLLHLEADNPAKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +  + +  +   S +        Y                   
Sbjct: 97  STLVIGQAASMGSLLLTAGEAGMRFSLPNSRIMVHQPSGGYQGQ---------------- 140

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            + +              +  +       K    L      +  
Sbjct: 141 --------------ATDIMIHAAETQKLKDRLNEIYVKHTGQTLKKVENALERDNFMSPE 186

Query: 217 EAKKVGLIDVV 227
           EAK  GLID +
Sbjct: 187 EAKDFGLIDEI 197


>gi|330836759|ref|YP_004411400.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta
           coccoides DSM 17374]
 gi|329748662|gb|AEC02018.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta
           coccoides DSM 17374]
          Length = 200

 Score = 44.6 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 60/192 (31%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +   + ++  +  +D +  + + ++SPGGS  AG AI+  IQ + +  
Sbjct: 36  IIFLDGEINDVTADLAVAQLLFLESEDPSKDISLYINSPGGSVTAGLAIYDTIQYIHSDV 95

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L S A+       ++ V               +      +  +  
Sbjct: 96  QTICIGQAASMAALLLTSGAAGKRFILPSARVMIHQPWGGVQGQATDIGIHAREMSRI-- 153

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                                           V + +     P D+    L         
Sbjct: 154 ----------------------------KQLTVDIFARHTGHPADQVKKDLERDYFLAAP 185

Query: 217 EAKKVGLIDVVG 228
           +A   G++D V 
Sbjct: 186 DAVAYGIVDHVM 197


>gi|323128768|gb|ADX16198.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
          Length = 246

 Score = 44.6 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 81  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 140

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 141 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 194

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 195 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAP 230

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 231 EAVEYGLVDSILT 243


>gi|260584984|ref|ZP_05852727.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Granulicatella elegans ATCC 700633]
 gi|260157290|gb|EEW92363.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Granulicatella elegans ATCC 700633]
          Length = 197

 Score = 44.6 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 57/193 (29%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D     +I ++  +   D    + + ++SPGGS  AG AI+  +  +K   
Sbjct: 29  IIMVSGPIHDDMANAIIAQLLFLDAQDPEKDIYMYINSPGGSVTAGLAIYDTMNFIKADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +       A   + +     L         ++           
Sbjct: 89  QTIAMGLAASMGSFLLTAGTKGKRYALPNAEILIHQPLGGAQGQATEIEIAARQ------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +  +      ++++            +D   + T  
Sbjct: 143 ------------------------ILKTRERLNAILAKQTGQKLKTIEKDTDRDNYMTAQ 178

Query: 217 EAKKVGLIDVVGG 229
           EA + GLID +  
Sbjct: 179 EALEYGLIDAIMT 191


>gi|226310010|ref|YP_002769904.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
           brevis NBRC 100599]
 gi|226092958|dbj|BAH41400.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
           brevis NBRC 100599]
          Length = 193

 Score = 44.6 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  ++ ++  ++ +D    + + ++SPGGS  AG AI   ++ V    
Sbjct: 29  IIFLGSAIDDQVANAVVAQLLFLAAEDPKKDIHLYINSPGGSVTAGMAIIDTMKFVAPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L++ A     A   + V               +            
Sbjct: 89  STICTGMAASMGAMLLVAGAPGKRYALPNAEVMLHQPWGGSQGQASDIKIAADR------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +    H    ++SE      ++    +D   + T A
Sbjct: 143 ------------------------IMRHRHMLYTIISERTGKTVEQIEKDADRDYFLTAA 178

Query: 217 EAKKVGLIDVV 227
           EA + GLID V
Sbjct: 179 EALEYGLIDKV 189


>gi|1145796|gb|AAA84990.1| NfeD [Rhizobium etli]
 gi|2655362|gb|AAC64872.1| ORF2 [Rhizobium etli]
          Length = 467

 Score = 44.6 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 86/251 (34%), Gaps = 18/251 (7%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISR 62
           L+  + +  + +L+ L +  +        +   V  + + G I  +    ++  I+R   
Sbjct: 11  LRCWRWQPPIFTLLFLLLSAWGLGIPSASDRASV-VLKVNGAIGPAIADYVVRGIQRAGE 69

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNII 121
            ++   +++ + +PGG   +   I RAI          +      AASAG  I  AS+I 
Sbjct: 70  REAV-LIVLQMDTPGGLDTSMREIIRAILASPVPVASFVAPSGARAASAGTYILYASHIA 128

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
           V A  + +G+   +            L V        P K    P  +         +  
Sbjct: 129 VMAPGTNLGAATPIA-----------LSVKPFGGDEEPEKKPSEPSGKQPEAPGNAHEAK 177

Query: 182 VDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLID-VVGGQEEVWQSLYA 239
             +    ++R ++E RN   D     + +    +   A +   ID       ++      
Sbjct: 178 AVNDAVAYIRGLAELRNRNADWAERAVREAASLSSTAAVREHAIDFTAADVNDLLAKAQG 237

Query: 240 LGVDQSIRKIK 250
             V     +++
Sbjct: 238 RMVRVGQTEVR 248


>gi|332706287|ref|ZP_08426354.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lyngbya
           majuscula 3L]
 gi|332354935|gb|EGJ34408.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lyngbya
           majuscula 3L]
          Length = 198

 Score = 44.6 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 65/189 (34%), Gaps = 33/189 (17%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            +  +I +  ++I  +  +  +D++  +I+ ++SPGGS  AG AI+  +Q +K+    + 
Sbjct: 38  EVDDEITN--QIIAVMLYLDSEDNSKDIILYINSPGGSVTAGMAIYDTMQHIKSDVVTVC 95

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                +  +  L +      +A   S +               ++     I  ++     
Sbjct: 96  VGLAASMGSFLLAAGKKGKRIALPHSRIMIHQPSGGTRGQATDIEIEAREILRIRH---- 151

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220
                                         + +++     +K     D   + +  EAK+
Sbjct: 152 --------------------------QLNEIYAQNTGQSLEKIEKDMDRDFFMSADEAKE 185

Query: 221 VGLIDVVGG 229
            GLID V  
Sbjct: 186 YGLIDQVID 194


>gi|184200755|ref|YP_001854962.1| ATP-dependent Clp protease proteolytic subunit [Kocuria rhizophila
           DC2201]
 gi|183580985|dbj|BAG29456.1| ATP-dependent Clp protease proteolytic subunit [Kocuria rhizophila
           DC2201]
          Length = 220

 Score = 44.6 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 57/185 (30%), Gaps = 29/185 (15%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    + + ++SPGGS  A  AI+  +Q ++     +      +
Sbjct: 53  TSADDIMAQLLVLESQDPDRDITMYINSPGGSFTAMTAIYDTMQYIRPEIQTVCLGQAAS 112

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A++  L        +A   + V       +        D    + +              
Sbjct: 113 AASVLLAGGTPGKRLALPNARVLIHQPAMEGQGGGQASDIEIQANEI------------- 159

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226
                               W    ++   N   +     +   +I T  EA++ G+ID 
Sbjct: 160 ---------------MRMRTWLEETMALHTNKNVEDINRDIERDKILTAKEAQEYGIIDQ 204

Query: 227 VGGQE 231
           V    
Sbjct: 205 VLDSR 209


>gi|81301334|ref|YP_401542.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           elongatus PCC 7942]
 gi|81170215|gb|ABB58555.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           elongatus PCC 7942]
          Length = 244

 Score = 44.6 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 31/182 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q+V      I      +  
Sbjct: 79  ADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMG 138

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L   A    +A  ++ +     L         ++                       
Sbjct: 139 AFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIE----------------------- 175

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228
                  +    +         L+++    P +K  V +D   + +  EAK  GLID V 
Sbjct: 176 -------IQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 228

Query: 229 GQ 230
            +
Sbjct: 229 TR 230


>gi|16759428|ref|NP_455045.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|16763829|ref|NP_459444.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|29142800|ref|NP_806142.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|162139608|ref|YP_215477.2| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|168237562|ref|ZP_02662620.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168261116|ref|ZP_02683089.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168465541|ref|ZP_02699423.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|194443946|ref|YP_002039691.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194451357|ref|YP_002044483.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194734455|ref|YP_002113479.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|204930575|ref|ZP_03221505.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|207855928|ref|YP_002242579.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|213025962|ref|ZP_03340409.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
 gi|213419494|ref|ZP_03352560.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
 gi|213425858|ref|ZP_03358608.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213646005|ref|ZP_03376058.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|213853068|ref|ZP_03382600.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|238911421|ref|ZP_04655258.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|60391923|sp|P0A1D7|CLPP_SALTY RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|60391924|sp|P0A1D8|CLPP_SALTI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|67460140|sp|Q57SB5|CLPP_SALCH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|226706468|sp|B5QTJ6|CLPP_SALEP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706469|sp|B4T9E3|CLPP_SALHS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706470|sp|B4SWU1|CLPP_SALNS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706472|sp|B4TMC6|CLPP_SALSV RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|25289858|pir||AC0558 ATP-dependent clp protease proteolytic chain [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|7594816|dbj|BAA94668.1| serine protease subunit [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|16418955|gb|AAL19403.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16501719|emb|CAD08907.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138432|gb|AAO70002.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|194402609|gb|ACF62831.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194409661|gb|ACF69880.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194709957|gb|ACF89178.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195631923|gb|EDX50443.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197289522|gb|EDY28885.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|204320509|gb|EDZ05712.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205350070|gb|EDZ36701.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206707731|emb|CAR32016.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|261245731|emb|CBG23528.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992163|gb|ACY87048.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157059|emb|CBW16543.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312911481|dbj|BAJ35455.1| ATP-dependent Clp protease proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|320084722|emb|CBY94513.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322614726|gb|EFY11655.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322618832|gb|EFY15720.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623539|gb|EFY20378.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322629162|gb|EFY25941.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322631883|gb|EFY28637.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322637380|gb|EFY34082.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322642065|gb|EFY38675.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322647884|gb|EFY44359.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322652562|gb|EFY48916.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322653276|gb|EFY49609.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660575|gb|EFY56811.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664727|gb|EFY60920.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322669220|gb|EFY65370.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322670765|gb|EFY66898.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322678996|gb|EFY75051.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322682025|gb|EFY78050.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322685146|gb|EFY81143.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323192960|gb|EFZ78183.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323196958|gb|EFZ82100.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323203943|gb|EFZ88960.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323206972|gb|EFZ91925.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323214175|gb|EFZ98933.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323214501|gb|EFZ99252.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323223058|gb|EGA07401.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323227007|gb|EGA11188.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323230175|gb|EGA14295.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323233913|gb|EGA18002.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323238393|gb|EGA22451.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323244080|gb|EGA28089.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323246241|gb|EGA30224.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251867|gb|EGA35730.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323257864|gb|EGA41543.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323261123|gb|EGA44715.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264947|gb|EGA48446.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323272510|gb|EGA55917.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|332987397|gb|AEF06380.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 207

 Score = 44.6 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 102 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 156 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAP 191

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 192 EAVEYGLVDSILT 204


>gi|220932330|ref|YP_002509238.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Halothermothrix orenii H 168]
 gi|259585957|sp|B8CY74|CLPP_HALOH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|219993640|gb|ACL70243.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Halothermothrix orenii H 168]
          Length = 198

 Score = 44.6 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 54/185 (29%), Gaps = 31/185 (16%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +I ++  +  +D    + + ++SPGGS  A  A++  IQ +K     I      +A A  
Sbjct: 44  IIAQLLFLEAEDPDKDIHLYINSPGGSVTAALAMYDTIQYIKPDVATICMGQAASAGALL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L S       A   + V                +                          
Sbjct: 104 LASGTKGKRYALPNARVMIHQPAGGVQGKATEAEIHIKE--------------------- 142

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQE 231
                    +         ++S+      ++    +      T  EA + G+ID V  + 
Sbjct: 143 ---------LLRLRERLNEILSKHTGKSVEQISKDVEQDYFMTAEEALEYGIIDEVITKN 193

Query: 232 EVWQS 236
           E+   
Sbjct: 194 ELKDK 198


>gi|255523909|ref|ZP_05390872.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           carboxidivorans P7]
 gi|296185149|ref|ZP_06853559.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           carboxidivorans P7]
 gi|255512340|gb|EET88617.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           carboxidivorans P7]
 gi|296049983|gb|EFG89407.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           carboxidivorans P7]
          Length = 194

 Score = 44.6 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 65/191 (34%), Gaps = 31/191 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D+    ++ ++  +  ++    +   ++SPGGS  AG AI+  +Q +K+  
Sbjct: 29  IIMLNGEVTDASASVIVAQLLFLEANNPDEDIHFYINSPGGSITAGMAIYDTMQYIKSDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +       A   S +          +     D           
Sbjct: 89  STICVGMAASMGSFLLAAGEPGKRYALPNSEILIHQPSVYGGFQGQATDI---------- 138

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                             ++  D +  +     ++ SE    P ++     +   + +  
Sbjct: 139 ------------------KIHTDWLLKTKKKMNKIYSEKTGKPIEQIEKDMERDYFMSAK 180

Query: 217 EAKKVGLIDVV 227
           EA + GL+D +
Sbjct: 181 EAVEYGLVDKI 191


>gi|283784263|ref|YP_003364128.1| ATP-dependent clp protease proteolytic subunit [Citrobacter
           rodentium ICC168]
 gi|282947717|emb|CBG87272.1| ATP-dependent clp protease proteolytic subunit [Citrobacter
           rodentium ICC168]
          Length = 207

 Score = 44.6 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 102 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 156 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAP 191

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 192 EAVEYGLVDSILT 204


>gi|238062482|ref|ZP_04607191.1| endopeptidase Clp [Micromonospora sp. ATCC 39149]
 gi|237884293|gb|EEP73121.1| endopeptidase Clp [Micromonospora sp. ATCC 39149]
          Length = 212

 Score = 44.6 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 63/190 (33%), Gaps = 33/190 (17%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT-EVHEMA 107
            + ++  ++  ++ +DS   + + ++SPGGS  AG A++  ++ V+N    +   +    
Sbjct: 54  SANQICAQLLLLAAEDSERDIHLYINSPGGSVSAGMAVYDTMRYVRNDVATLALGMAGSM 113

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
                    A        + ++                                 +PS  
Sbjct: 114 GQFLLCAGTAGKRYALPHSRIMM-------------------------------HQPSGG 142

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDV 226
                  + +  + +         L++       ++     D  R +T  EA++ GL+D 
Sbjct: 143 FGGTVADITIQAENMLHVKRTMQELIARHSGRTLEQIRQDWDRDRWFTAEEAREYGLVDQ 202

Query: 227 VGGQEEVWQS 236
           V  + +   +
Sbjct: 203 VLTRVDQLAA 212


>gi|206900657|ref|YP_002250483.1| YqeZ [Dictyoglomus thermophilum H-6-12]
 gi|206739760|gb|ACI18818.1| YqeZ [Dictyoglomus thermophilum H-6-12]
          Length = 423

 Score = 44.6 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 12/91 (13%)

Query: 5  LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISRD 63
          +KKI     +L L+  ++            + +V  I I+G IE      +E    I   
Sbjct: 1  MKKIFITIFLLFLILSSIYA---------QNQNVYIIPIKGTIELGLASFVE--RSIREH 49

Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           +A A I  + + GG   A   I   I    
Sbjct: 50 PNAKAFIFEIDTFGGRVDAAIKIRDTILATP 80


>gi|161615359|ref|YP_001589324.1| hypothetical protein SPAB_03130 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197263975|ref|ZP_03164049.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|198242637|ref|YP_002214402.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200390046|ref|ZP_03216657.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205357179|ref|ZP_02345490.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205359635|ref|ZP_02830941.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|224582286|ref|YP_002636084.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|161364723|gb|ABX68491.1| hypothetical protein SPAB_03130 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197242230|gb|EDY24850.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197937153|gb|ACH74486.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199602491|gb|EDZ01037.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205323485|gb|EDZ11324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205344194|gb|EDZ30958.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|224466813|gb|ACN44643.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|322713521|gb|EFZ05092.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|326622151|gb|EGE28496.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 243

 Score = 44.6 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 78  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 137

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 138 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 191

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 192 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAP 227

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 228 EAVEYGLVDSILT 240


>gi|157737934|ref|YP_001490618.1| ATP-dependent Clp protease proteolytic subunit [Arcobacter butzleri
           RM4018]
 gi|315637681|ref|ZP_07892886.1| ATP-dependent Clp protease proteolytic subunit [Arcobacter butzleri
           JV22]
 gi|167008646|sp|A8EVH5|CLPP_ARCB4 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157699788|gb|ABV67948.1| ATP-dependent Clp protease, proteolytic subunit [Arcobacter
           butzleri RM4018]
 gi|315478028|gb|EFU68756.1| ATP-dependent Clp protease proteolytic subunit [Arcobacter butzleri
           JV22]
          Length = 194

 Score = 44.6 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 56/193 (29%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D+    ++ ++  +  +D    + + ++SPGG   +G +IF  +  +K   
Sbjct: 29  IIMLSGEINDAVASTVVAQLLFLEAEDPDKDIYLYINSPGGVVTSGMSIFDTMNYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S A     +   S +     L                      
Sbjct: 89  CTICIGQAASMGAFLLSSGAKGKRYSLPNSRIMIHQPLG--------------------- 127

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                      +                      +++      +      +D   + +  
Sbjct: 128 GARGQATDIQIQAKEIQR---------LKDTLNGILASQTGQDFATIEKDTDRDNFMSAE 178

Query: 217 EAKKVGLIDVVGG 229
           EA   GLID V  
Sbjct: 179 EACSYGLIDEVIT 191


>gi|153932099|ref|YP_001384751.1| putative Clp protease [Clostridium botulinum A str. ATCC 19397]
 gi|152928143|gb|ABS33643.1| putative Clp protease [Clostridium botulinum A str. ATCC 19397]
          Length = 252

 Score = 44.6 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 72/219 (32%), Gaps = 37/219 (16%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRD----DSATALIVSLSSPGGS 79
            W       + ++    I G I      +     +    D         L + ++SPGGS
Sbjct: 6   FWEVKNSTENENIGEAYIYGDIVSYKWDDTDTTAKSFKEDLDSLGDIDTLNIYINSPGGS 65

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
            + G+AI+  I++ K +      V  +AAS   +I+ A N I   + S++          
Sbjct: 66  VFQGQAIYNIIKRHKAKIN--IHVDGVAASIASVIAMAGNTIFMPKNSMMMIHN------ 117

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                         +      K       +++     +++            L      +
Sbjct: 118 ------------PWTFAYGNAKELRKQADDLDKIRESLIEAY----------LSKAGDKL 155

Query: 200 PYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSL 237
             +  + + D   W T  E    GL D +  ++E+  S+
Sbjct: 156 SRETLIGIMDNETWLTAQECYDYGLCDELVEEKEIAASI 194


>gi|123443342|ref|YP_001007316.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|2493738|sp|Q60107|CLPP_YEREN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214722|sp|A1JNN2|CLPP_YERE8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|1377852|gb|AAC45782.1| ClpP [Yersinia enterocolitica]
 gi|122090303|emb|CAL13169.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 207

 Score = 44.6 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 62/196 (31%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  +  ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  IIFLTGQVEDHMANLITAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +      ++           
Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L+++      ++        R  +  
Sbjct: 156 ------------------------ILKVKSRMNELMAKHTGKSLEEIERDTERDRFLSAD 191

Query: 217 EAKKVGLIDVVGGQEE 232
           EA + GL+D V  + +
Sbjct: 192 EAVEYGLVDSVFTRRD 207


>gi|328950648|ref|YP_004367983.1| protein of unknown function DUF107 [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450972|gb|AEB11873.1| protein of unknown function DUF107 [Marinithermus hydrothermalis
           DSM 14884]
          Length = 422

 Score = 44.6 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 75/289 (25%), Gaps = 63/289 (21%)

Query: 14  MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-QELIERIERISRDDSATALIVS 72
               +TL  + F+              I I G+I  +  + +E+    +  + A+ +++ 
Sbjct: 5   FAVFITLLGMAFA----------QTYVIPIEGEIGPALADFLEQSLERAEQEGASGVVLF 54

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           + +PGG   A   +   I                                +A   +  S 
Sbjct: 55  VDTPGGRVDAAIRMSDTILST-----------------PIPTLAVVQNAFSAGALITLSA 97

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
             +   P                          P + +     Q     + S      R 
Sbjct: 98  DQIAMLP------------------GSEIGAALPITVLPGTQPQAADRKIISGLRGKFRA 139

Query: 193 VSESRNIPYDKTLVLSDGRI-------------WTGAEAKKVGLIDVVGGQEEVWQSLYA 239
           V+E+R  P +    + D  I              +GA+A ++GL D         +    
Sbjct: 140 VAEARGRPAELAEAMVDPDIEIEGLAAKGEPLTLSGAKAVELGLADFEASS---LRHALE 196

Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE-DTIPLMKQTKVQGL 287
           L    S     D                   LL    + L+ +    G 
Sbjct: 197 LAGFSSQVVRLDLPARVRVARFLTSPFIAPILLAVGVLGLVIEAFTPGF 245


>gi|288549991|ref|ZP_05968896.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterobacter
           cancerogenus ATCC 35316]
 gi|288316903|gb|EFC55841.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterobacter
           cancerogenus ATCC 35316]
          Length = 194

 Score = 44.6 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 29  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 89  STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L+++      ++        R  +  
Sbjct: 143 ------------------------ILKVKARMNELMAQHTGQSLEQIERDTERDRFLSAP 178

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D V  
Sbjct: 179 EAVEYGLVDSVLT 191


>gi|74317695|ref|YP_315435.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thiobacillus
           denitrificans ATCC 25259]
 gi|90183186|sp|Q3SI98|CLPP_THIDA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|74057190|gb|AAZ97630.1| peptidase S14, ClpP [Thiobacillus denitrificans ATCC 25259]
          Length = 212

 Score = 44.6 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 58/195 (29%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D+    ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 43  VIFLVGPVNDATANLIVAQMLFLESENPDKDIYLYINSPGGSVSAGLAIYDTMQFIKPDV 102

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A         S V     L  +      ++           
Sbjct: 103 STLCIGQAASMGAFLLTAGAKGKRYCLPNSRVMIHQPLGGFQGQASDIEIHAKE------ 156

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         ++++      +            +  
Sbjct: 157 ------------------------ILYLKARLNGMLAKHTGQSLEVIDRDTDRDNFMSAE 192

Query: 217 EAKKVGLIDVVGGQE 231
           ++ K GL+D V    
Sbjct: 193 DSVKYGLVDKVLTSR 207


>gi|229823184|ref|ZP_04449253.1| hypothetical protein GCWU000282_00482 [Catonella morbi ATCC 51271]
 gi|229787350|gb|EEP23464.1| hypothetical protein GCWU000282_00482 [Catonella morbi ATCC 51271]
          Length = 198

 Score = 44.6 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 56/193 (29%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G I+D+    +I ++  +   D    + + ++SPGGS  AG AIF  +  +    
Sbjct: 29  IVMLSGPIDDAVANSVIAQLLFLDAQDPDKDIYLYINSPGGSVSAGLAIFDTMNFINADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +       A   + V     L         ++           
Sbjct: 89  QTIVIGMAASMGAFLLAAGEKGKRYALPNAEVMIHQPLGGAQGQATEIEIAAK------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +  +     ++++E                   +  
Sbjct: 142 -----------------------HILKTRDTLNKILAERTGQTLKVIARDTDRDNYMSAE 178

Query: 217 EAKKVGLIDVVGG 229
           EA K GL+D +  
Sbjct: 179 EAVKYGLVDAIMT 191


>gi|299143348|ref|ZP_07036428.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
           sp. oral taxon 386 str. F0131]
 gi|298517833|gb|EFI41572.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
           sp. oral taxon 386 str. F0131]
          Length = 194

 Score = 44.6 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  ++ ++  +  +D    + + ++SPGGS  AG AI+  I+ +K   
Sbjct: 29  IIFLSGEINDVTADLVVAQLLFLEAEDQNKDIQIYINSPGGSVSAGFAIYDTIKYIKCDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L +       A   + +     L         +      I  +  
Sbjct: 89  STMVIGLAASMGAFLLAAGTKGKRFALPNADIMIHQPLGGAQGQASDIKIHAEKILEI-- 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                            +++SE    P +K    +D   + +  
Sbjct: 147 ----------------------------RERINKILSEETGQPLEKVERDTDRDYYLSAK 178

Query: 217 EAKKVGLIDVV 227
           EA + GLID V
Sbjct: 179 EAVEYGLIDKV 189


>gi|161504375|ref|YP_001571487.1| hypothetical protein SARI_02486 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865722|gb|ABX22345.1| hypothetical protein SARI_02486 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 243

 Score = 44.6 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 78  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 137

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 138 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 191

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 192 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAP 227

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 228 EAVEYGLVDSILT 240


>gi|307727567|ref|YP_003910780.1| hypothetical protein BC1003_5571 [Burkholderia sp. CCGE1003]
 gi|307588092|gb|ADN61489.1| protein of unknown function DUF107 [Burkholderia sp. CCGE1003]
          Length = 598

 Score = 44.2 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 71/241 (29%), Gaps = 23/241 (9%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGS 79
               +        S  V  I + G I    +  ++  ++R + D  A   ++ L +PGG 
Sbjct: 73  AAAVAKPPGDAYASNSVVVIPVSGAIGPASADFIVRSLQRAA-DGHAQLAVLQLDTPGGL 131

Query: 80  AYAGEAIFRAI---------------QKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
             +   I +AI                +  +    I     +AA A      A+  I   
Sbjct: 132 DTSMRQIIKAILASPVPVATFIAPSGARAASAGTYIVYASHIAAMAPGTNLGAATPIQMG 191

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVV 182
                   G   + P       +   +  +   +   A  +P +   +            
Sbjct: 192 IGGTEPPGGGTPRLPGTGDRERQAPGAASATAPAASNASGTPAAPANLPLDTQSTELRKQ 251

Query: 183 DSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
                 ++R +++ R    D     + +    T A+A    ++D      +V   L  L 
Sbjct: 252 VHDAAAYIRGLAQMRGRNADWAERAVREAVSLTAADALAQHVVD--VNARDVPDLLRQLD 309

Query: 242 V 242
            
Sbjct: 310 G 310


>gi|282850557|ref|ZP_06259936.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           parvula ATCC 17745]
 gi|294792182|ref|ZP_06757330.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           sp. 6_1_27]
 gi|294794047|ref|ZP_06759184.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           sp. 3_1_44]
 gi|282580050|gb|EFB85454.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           parvula ATCC 17745]
 gi|294455617|gb|EFG23989.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           sp. 3_1_44]
 gi|294457412|gb|EFG25774.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           sp. 6_1_27]
          Length = 197

 Score = 44.2 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 58/195 (29%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D  +  +I ++  +  +D    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 28  IIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMQYIKPDV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +       A   + +     L         ++           
Sbjct: 88  STICVGSAASMGAVLLTAGTKGKRYALPHARIMIHQPLGGVQGQASEIEIHARE------ 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +         +++       +            +  
Sbjct: 142 ------------------------ILRMREELNGILASRSGQDIEVVARDTDRDNFMSAQ 177

Query: 217 EAKKVGLIDVVGGQE 231
           +A + GLID V  +E
Sbjct: 178 DAVEYGLIDEVLTRE 192


>gi|242243098|ref|ZP_04797543.1| bacteriophage protease [Staphylococcus epidermidis W23144]
 gi|242233446|gb|EES35758.1| bacteriophage protease [Staphylococcus epidermidis W23144]
          Length = 248

 Score = 44.2 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 67/206 (32%), Gaps = 40/206 (19%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQELIER-----IERISRDDSATALIVSLSSPGGSA 80
             S   E +  HV  I   G I +     E      + +   +  A  + + L+SPGG+A
Sbjct: 10  FSSMKSETSDEHVLVI--SGAIGEGGYFYEGTSATDVRKALENVEAKTIRIKLNSPGGNA 67

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           + G  I+  ++ +     ++      A++A  +   A  +I+   ++++        Y  
Sbjct: 68  FDGLEIYNYLKDLDA-HVIVEVTALAASAASIIAMGADEVIMRTGSTMMIHNASTITYGN 126

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
               L                                + + +       + +  E   + 
Sbjct: 127 KDEMLK-------------------------------VYEYLAKIDTSIIDVYKEKTGLS 155

Query: 201 YDKTLVLSDGRIW-TGAEAKKVGLID 225
            D+   + +   W T +EA + G  D
Sbjct: 156 TDEIKEMLNNETWFTASEAVEKGFAD 181


>gi|242062408|ref|XP_002452493.1| hypothetical protein SORBIDRAFT_04g026880 [Sorghum bicolor]
 gi|241932324|gb|EES05469.1| hypothetical protein SORBIDRAFT_04g026880 [Sorghum bicolor]
          Length = 309

 Score = 44.2 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 15/196 (7%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++    + + ++SPGG   AG AI+  +Q ++   
Sbjct: 110 IVCIHGPIADDTASLVVAQLLFLESENPLKPVHLYINSPGGVVTAGLAIYDTMQYIRCPV 169

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV----LFQYPYVKPFLDKLGVSIK 153
             +      +  +  L + A     A   + V           Q   +     ++     
Sbjct: 170 TTLCIGQAASMGSLLLAAGAPGERRALPNARVMIHQPSGGAQGQATDIAIQAKEILKMRD 229

Query: 154 SVKSSPMKAEPSPFSEVNP-KAVQMMQDVVDSSYHWFVRLVSESRNIPYD--------KT 204
            +     K    P  ++       +  D  ++     +  V E+R               
Sbjct: 230 RLNKIYQKHTRQPIDKIEQCMERDLFMDPEEARDWGLIDEVIENRPASLMPDGIGGGLDV 289

Query: 205 LVLSDGRIWTGAEAKK 220
             L  G    G +A +
Sbjct: 290 PSLGVGPGGRGRDAVE 305


>gi|56476917|ref|YP_158506.1| putative nodulation efficiency protein D [Aromatoleum aromaticum
           EbN1]
 gi|56312960|emb|CAI07605.1| putative nodulation efficiency protein D [Aromatoleum aromaticum
           EbN1]
          Length = 481

 Score = 44.2 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 87/262 (33%), Gaps = 7/262 (2%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ-ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           +     E  +  V  + + G I  +  + + R    +R ++A  +++ + +PGG   +  
Sbjct: 25  AGGRAAEAPAARVVALRLDGVIGPATADFVSRGLARARSENAGLVVIEMDTPGGLDASMR 84

Query: 85  AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
            I R I                 AASAG  I  AS+I   A  + +G+   +        
Sbjct: 85  VIIREILASPIPIATYVSPGGARAASAGTYILYASHIAAMAPATNLGAATPVAIGAPGGG 144

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD- 202
                     + +           +         M   +++    ++R +++ R    D 
Sbjct: 145 KPPAKDNDPATTRPGKDGDSADKAAAPKAPRGDAMMAKIENDAAAYLRSLAQLRGRDADF 204

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIKDWNPPK---NY 258
               + +    +  EA K G+IDVV    +++   +    V      +            
Sbjct: 205 AERAVREAASLSADEALKGGVIDVVASDLKDLLARIDGRTVKLDSGNVVQLATADAAVER 264

Query: 259 WFCDLKNLSISSLLEDTIPLMK 280
              D +N  +S L    + L+ 
Sbjct: 265 IAPDWRNRILSILSNPQLALVL 286


>gi|15668307|ref|NP_247103.1| hypothetical protein MJ_0137 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2495823|sp|Q57601|Y137_METJA RecName: Full=Uncharacterized protein MJ0137
 gi|1592268|gb|AAB98120.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 286

 Score = 44.2 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 72/181 (39%), Gaps = 10/181 (5%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            IEDS+E++  I    +D     +I    +PGG   A   I +A++       VI   + 
Sbjct: 77  TIEDSEEILRAIRAAPKDKPIDLII---HTPGGLVLAATQIAKALKAHPAETRVIVPHYA 133

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           M+   G LI+ A++ I+  E +++G +         +     +  +++   +     +  
Sbjct: 134 MSG--GTLIALAADKIIMDENAVLGPVD----PQLGQYPAPSIVKAVEQKGADKADDQTL 187

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL-I 224
             +++  KA+  +Q+ V +                       +     T  EAK++GL +
Sbjct: 188 ILADIAKKAINQVQNFVYNLLKDKYGEEKAKELSKILTEGRWTHDYPITVEEAKELGLDV 247

Query: 225 D 225
           D
Sbjct: 248 D 248


>gi|56751593|ref|YP_172294.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
           elongatus PCC 6301]
 gi|3023500|sp|O34125|CLPP2_SYNE7 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|67460442|sp|Q5N1P6|CLPP3_SYNP6 RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|15620530|gb|AAL03914.1|U30252_2 ClpP2 [Synechococcus elongatus PCC 7942]
 gi|2351823|gb|AAB68677.1| ATP-dependent Clp protease, proteolytic subunit [Synechococcus
           elongatus PCC 7942]
 gi|56686552|dbj|BAD79774.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
           elongatus PCC 6301]
          Length = 240

 Score = 44.2 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 31/182 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q+V      I      +  
Sbjct: 75  ADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMG 134

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L   A    +A  ++ +     L         ++                       
Sbjct: 135 AFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIE----------------------- 171

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228
                  +    +         L+++    P +K  V +D   + +  EAK  GLID V 
Sbjct: 172 -------IQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 224

Query: 229 GQ 230
            +
Sbjct: 225 TR 226


>gi|289810836|ref|ZP_06541465.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 50

 Score = 44.2 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
           R  P      ++ G  W G +A + GL+D +   +EV   L  
Sbjct: 1   RMRPALDIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLME 43


>gi|224283328|ref|ZP_03646650.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313140480|ref|ZP_07802673.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313132990|gb|EFR50607.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 239

 Score = 44.2 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 30/181 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D +  +++ ++SPGGS  A  AI+  +Q +K     +      +
Sbjct: 83  TSADDIMAQLLVLESQDPSRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 142

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L + A    +    + V          + K                         
Sbjct: 143 AAAILLAAGAKGKRLMLPNARVLIHQPAIDQGFGKA------------------------ 178

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226
                  +++    +     W    +++      +K    +      T  EAK  G++D 
Sbjct: 179 -----TEIEIQAKEMLRMREWLENTLAKHTGQDVEKIRKDIEVDTFLTAQEAKDYGIVDE 233

Query: 227 V 227
           V
Sbjct: 234 V 234


>gi|86741462|ref|YP_481862.1| ATP-dependent Clp protease proteolytic subunit [Frankia sp. CcI3]
 gi|86568324|gb|ABD12133.1| ATP-dependent Clp protease proteolytic subunit ClpP / ClpP2
           peptidase. Serine peptidase. MEROPS family S14 [Frankia
           sp. CcI3]
          Length = 224

 Score = 44.2 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 64/194 (32%), Gaps = 29/194 (14%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +  +D    + + ++SPGGS  +  AI+  +Q V+     I      +
Sbjct: 59  VSANDVMAQLLFLESEDPDRDISIYINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAAS 118

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L +       A E S +       Q                              
Sbjct: 119 AAAVLLAAGTPGKRFALENSRILIHQPSAQGEGQS------------------------- 153

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
              +   +Q  + +   +    +      R    +        +I++  EA++ GLID V
Sbjct: 154 ---SDIEIQAREILRVRALQETMLARHTGRTET-EIRRDTERDKIFSADEAEEYGLIDEV 209

Query: 228 GGQEEVWQSLYALG 241
               +  + L A  
Sbjct: 210 IMSRKAARLLSARS 223


>gi|32266066|ref|NP_860098.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           hepaticus ATCC 51449]
 gi|60389734|sp|Q7VIN7|CLPP_HELHP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|32262115|gb|AAP77164.1| endopeptidase ClpP [Helicobacter hepaticus ATCC 51449]
          Length = 196

 Score = 44.2 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 59/193 (30%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  ++ ++  +  +D    +   ++SPGG   +  +I+  +  + +  
Sbjct: 30  IILLSGEINDHIASSIVAQLLFLEAEDPEKDINFYINSPGGVITSAFSIYDTMNYIHSDI 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +A A  L S       +   S +     L         ++           
Sbjct: 90  STICIGQAASAGAFLLSSGTKGKRFSLPNSRIMIHQPLGGAQGQATDIE----------- 138

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                              +    +         +++ +     +K           +G 
Sbjct: 139 -------------------IQAREILRLKKILNEIMAHNTGQKIEKITQDTERDFFMSGE 179

Query: 217 EAKKVGLIDVVGG 229
           EAKK GL+D +  
Sbjct: 180 EAKKYGLVDEILT 192


>gi|312143235|ref|YP_003994681.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Halanaerobium
           sp. 'sapolanicus']
 gi|311903886|gb|ADQ14327.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Halanaerobium
           sp. 'sapolanicus']
          Length = 198

 Score = 44.2 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 58/188 (30%), Gaps = 31/188 (16%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  +I ++  +  D+    + + ++SPGGS  A  A++  +Q +K     I      +A 
Sbjct: 41  ANTVIAQLLFLEADNPDKDIYLYINSPGGSVTAALAMYDTMQYIKPDVVTIGMGQAASAG 100

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L + A     A   + V                +     +  +              
Sbjct: 101 ALLLAAGAEGKRYALPYARVMIHQPAGGAQGKATEAEIHIKELMRI-------------- 146

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVG 228
                                +++SE      +K    +      T  EA   G+ID V 
Sbjct: 147 ----------------RELLNQILSEHTGQDVEKIAQDVEKDYFMTAEEALDYGIIDEVI 190

Query: 229 GQEEVWQS 236
            + E+ + 
Sbjct: 191 TRNELEEK 198


>gi|311064596|ref|YP_003971321.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           bifidum PRL2010]
 gi|310866915|gb|ADP36284.1| ClpP2 ATP-dependent Clp protease proteolytic subunit
           [Bifidobacterium bifidum PRL2010]
          Length = 239

 Score = 44.2 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 30/181 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D +  +++ ++SPGGS  A  AI+  +Q +K     +      +
Sbjct: 83  TSADDIMAQLLVLESQDPSRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 142

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L + A    +    + V          + K                         
Sbjct: 143 AAAILLAAGAKGKRLMLPNARVLIHQPAIDQGFGKA------------------------ 178

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226
                  +++    +     W    +++      +K    +      T  EAK  G++D 
Sbjct: 179 -----TEIEIQAKEMLRMREWLENTLAKHTGQDVEKIRKDIEVDTFLTAQEAKDYGIVDE 233

Query: 227 V 227
           V
Sbjct: 234 V 234


>gi|237744773|ref|ZP_04575254.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           7_1]
 gi|229432002|gb|EEO42214.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           7_1]
          Length = 367

 Score = 44.2 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 78/233 (33%), Gaps = 44/233 (18%)

Query: 30  HVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGS 79
            +++ + + A I I G I            S    + ++      + + + + ++SPGG 
Sbjct: 11  EIKNLTENTAEIRIYGTITKWAWEDYGEVSSANFAKELQ---NYKNVSQINLRVNSPGGD 67

Query: 80  AYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
            +   AI+  ++     N   +   +  +AASA   +   ++ IV    +L      L  
Sbjct: 68  VFEASAIYNLLKDFAKVNNIQITGYIDGLAASAASFLILCASKIVMGIGALFMIHNPLTY 127

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
                  L K    + +VK S +    +                             +S+
Sbjct: 128 AYGNSIELQKQIELLDTVKESILDIYCT-----------------------------KSK 158

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
               +    +++ + +   EA + G ID +   +   +++  +  +  I    
Sbjct: 159 LSREEIAEKMNNEKWFRANEALEAGFIDEIVENDNSLENIKNISNELHIENFI 211


>gi|205351759|ref|YP_002225560.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205271540|emb|CAR36358.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
          Length = 207

 Score = 44.2 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 102 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 156 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAP 191

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 192 EAVEYGLVDSILT 204


>gi|209546440|ref|YP_002278330.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209539297|gb|ACI59230.1| Endopeptidase Clp [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 203

 Score = 44.2 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 67/197 (34%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++ D+    +  ++  +  ++    + + ++SPGG   +G A++  ++ ++   
Sbjct: 33  IVFLNGEVNDTVSALVCAQLLFLEAENPKKPIYLYINSPGGVVTSGLAMYDTMRYIRAPV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                         + +   +   + +   + G  G     P     + +     +    
Sbjct: 93  --------------HTLCMGTARSMGSFLLMAGEPGERAALPNASILIHQPSGGFQG--- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216
                            +Q+  + +  +     RL +E     Y+     +   R  T  
Sbjct: 136 -------------QATDMQIHAEEILKTKQRMTRLYAEHCGRSYEDFERAMDRDRFMTSQ 182

Query: 217 EAKKVGLIDVVGGQEEV 233
           EA + GLID +    EV
Sbjct: 183 EALEWGLIDKIMQLREV 199


>gi|256810323|ref|YP_003127692.1| protein of unknown function DUF114 [Methanocaldococcus fervens
           AG86]
 gi|256793523|gb|ACV24192.1| protein of unknown function DUF114 [Methanocaldococcus fervens
           AG86]
          Length = 282

 Score = 44.2 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 64/206 (31%), Gaps = 24/206 (11%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            IEDS+E++  I    +D     +I    +PGG   A   I +A++       VI   + 
Sbjct: 72  TIEDSEEILRAIRTAPKDKPIDLII---HTPGGLVLAATQIAKALKAHPAETRVIVPHYA 128

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           M +    +   A  II+     L      L QYP               VK+   K    
Sbjct: 129 M-SGGTLIALSADKIIMDENAVLGPVDPQLGQYPAPS-----------IVKAVEQKGADK 176

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAK 219
              +    A    + +       +  L  +       +   +     WT        EAK
Sbjct: 177 VDDQTLILADIAKKAINQVQNFVYTLLKDKYGKEKAKELAKILTEGKWTHDYPITVEEAK 236

Query: 220 KVGL-IDVVGGQEEVWQSLYALGVDQ 244
            +GL +D      E    L  L    
Sbjct: 237 NLGLDVDT--NVPEEVYELMELYKQP 260


>gi|297204822|ref|ZP_06922219.1| enoyl-CoA hydratase/isomerase [Streptomyces sviceus ATCC 29083]
 gi|197712537|gb|EDY56571.1| enoyl-CoA hydratase/isomerase [Streptomyces sviceus ATCC 29083]
          Length = 322

 Score = 44.2 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 81/274 (29%), Gaps = 36/274 (13%)

Query: 38  VARIAIRGQ------IEDSQELIERIERISRDDSATALIVSLSSPG-------------- 77
           V  + + G       ++ + +L   ++R+ RD +  A++ + + P               
Sbjct: 17  VLVVRVDGGPHQEFGVDLADKLDRLVKRVDRDPNVRAVVFTGAHPERFVSHAAVRWLQEE 76

Query: 78  --GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
             GS   G     A+ ++         +  +        +     + +    +  S  + 
Sbjct: 77  GAGSPRVGRRGAAAVVRMAKHVDRSRLLGPVLRRTPMRGALQLERLHSTFLRMNRSGVLF 136

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                       LG+  +   +  ++        +    + +             RL+  
Sbjct: 137 VAALNGSA----LGLGAEFAWACDLRVMADGDFFIGQPEILLGIIPGGGGTQRLTRLIGT 192

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
            R+        + +G+ +T  EA   G +D V  Q++V      L      R        
Sbjct: 193 HRS-----LAAILEGKPFTPEEALANGAVDKVVTQDKVVAQAVELAEHFGKRSKDTVASA 247

Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
           K   +        S  LED + + +      + +
Sbjct: 248 KRAVY-----FGGSMSLEDGLHVERAEFFTRILS 276


>gi|119025606|ref|YP_909451.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765190|dbj|BAF39369.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 233

 Score = 44.2 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 30/181 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    +++ ++SPGGS  A  AI+  +Q +K     +      +
Sbjct: 77  TSADDIMAQLLVLESQDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 136

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L + A    +    + V          + K                         
Sbjct: 137 AAAILLAAGAKGKRLMLPNARVLIHQPAIDQGFGKA------------------------ 172

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226
                  +++    +     W    +++      +K    +      T  EAK+ G++D 
Sbjct: 173 -----TEIEIQAKEMLRMREWLENTLAKHTGRDIEKIRKDIEVDTFLTAQEAKEYGIVDE 227

Query: 227 V 227
           V
Sbjct: 228 V 228


>gi|289641547|ref|ZP_06473709.1| Endopeptidase Clp [Frankia symbiont of Datisca glomerata]
 gi|289508642|gb|EFD29579.1| Endopeptidase Clp [Frankia symbiont of Datisca glomerata]
          Length = 223

 Score = 44.2 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 60/181 (33%), Gaps = 31/181 (17%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +  +D    + + ++SPGGS  A  AI+  +Q V+     I      +
Sbjct: 56  TSANDVMAQLLFLESEDPDRDISIYINSPGGSFTALTAIYDTMQFVRPDIQTICMGQAAS 115

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A++  L +         E S +       Q       L+                     
Sbjct: 116 AASVLLAAGTPGKRFGLENSRILLHQPSGQGEGQSSDLE--------------------- 154

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226
                    +    +        R+ +       ++    +   +I + AEAK+ GLID 
Sbjct: 155 ---------IQAREILRMRALLERIYARHTGRSEEEIRRDIERDKILSAAEAKEYGLIDE 205

Query: 227 V 227
           V
Sbjct: 206 V 206


>gi|284006421|emb|CBA71657.1| ATP-dependent Clp protease proteolytic subunit [Arsenophonus
           nasoniae]
          Length = 209

 Score = 44.2 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 44  IIFLTGQVEDHMANLVVAQMLFLEAENPDKDIHLYINSPGGVITAGMSIYDTMQFIKPDV 103

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +      ++     I  +  
Sbjct: 104 STICMGQACSMGAFLLTAGAKGKRYCLPNSRVMIHQPLGGFQGQASDIEIHAKEILKI-- 161

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L+++       +        R  T  
Sbjct: 162 ----------------------------KSRMNELMAKHTGKKIKEVENDTERDRFLTAE 193

Query: 217 EAKKVGLIDVV 227
           EA   GL+D +
Sbjct: 194 EAVSYGLVDKI 204


>gi|149201013|ref|ZP_01877988.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp.
           TM1035]
 gi|149145346|gb|EDM33372.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp.
           TM1035]
          Length = 210

 Score = 44.2 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 57/203 (28%), Gaps = 33/203 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++ +  + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 38  IIFLSGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +    +  +   S V        Y                   
Sbjct: 98  STLVVGQAASMGSLLLTAGEPGMRFSLPNSRVMVHQPSGGYQGQ---------------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +              +  +       K    L      +  
Sbjct: 142 --------------ATDIMIHARETQKLKDRLNEIYVKHTGQTLKKVEEALERDNFMSPE 187

Query: 217 EAKKVGLIDVVGGQEEVWQSLYA 239
           EAK  GLID +    +       
Sbjct: 188 EAKAWGLIDEIVANRDKGDEAAK 210


>gi|261837975|gb|ACX97741.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           51]
          Length = 196

 Score = 44.2 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I DS    ++ ++  +  +D    + + ++SPGG   +G +I+  +  ++   
Sbjct: 30  IVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     +   S +     L         ++ +         
Sbjct: 90  STICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNE------ 143

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +         +++++     ++    +D   + +  
Sbjct: 144 ------------------------ILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAK 179

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 180 EAKEYGLIDKV 190


>gi|237707568|ref|ZP_04538049.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Escherichia
           sp. 3_2_53FAA]
 gi|332281588|ref|ZP_08394001.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Shigella sp.
           D9]
 gi|226898778|gb|EEH85037.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Escherichia
           sp. 3_2_53FAA]
 gi|332103940|gb|EGJ07286.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Shigella sp.
           D9]
          Length = 227

 Score = 44.2 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 62  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 121

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 122 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 175

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 176 ------------------------ILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAP 211

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 212 EAVEYGLVDSILT 224


>gi|15645413|ref|NP_207587.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           26695]
 gi|108563204|ref|YP_627520.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           HPAG1]
 gi|207108488|ref|ZP_03242650.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           HPKX_438_CA4C1]
 gi|2493736|sp|P56156|CLPP_HELPY RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|185177747|pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp
 gi|185177748|pdb|2ZL0|B Chain B, Crystal Structure Of H.Pylori Clpp
 gi|185177749|pdb|2ZL0|C Chain C, Crystal Structure Of H.Pylori Clpp
 gi|185177750|pdb|2ZL0|D Chain D, Crystal Structure Of H.Pylori Clpp
 gi|185177751|pdb|2ZL0|E Chain E, Crystal Structure Of H.Pylori Clpp
 gi|185177752|pdb|2ZL0|F Chain F, Crystal Structure Of H.Pylori Clpp
 gi|185177753|pdb|2ZL0|G Chain G, Crystal Structure Of H.Pylori Clpp
 gi|185177754|pdb|2ZL0|H Chain H, Crystal Structure Of H.Pylori Clpp
 gi|185177755|pdb|2ZL0|I Chain I, Crystal Structure Of H.Pylori Clpp
 gi|185177756|pdb|2ZL0|J Chain J, Crystal Structure Of H.Pylori Clpp
 gi|185177757|pdb|2ZL0|K Chain K, Crystal Structure Of H.Pylori Clpp
 gi|185177758|pdb|2ZL0|L Chain L, Crystal Structure Of H.Pylori Clpp
 gi|185177759|pdb|2ZL0|M Chain M, Crystal Structure Of H.Pylori Clpp
 gi|185177760|pdb|2ZL0|N Chain N, Crystal Structure Of H.Pylori Clpp
 gi|185177761|pdb|2ZL2|A Chain A, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177762|pdb|2ZL2|B Chain B, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177763|pdb|2ZL2|C Chain C, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177764|pdb|2ZL2|D Chain D, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177765|pdb|2ZL2|E Chain E, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177766|pdb|2ZL2|F Chain F, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177767|pdb|2ZL2|G Chain G, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177768|pdb|2ZL2|H Chain H, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177769|pdb|2ZL2|I Chain I, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177770|pdb|2ZL2|J Chain J, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177771|pdb|2ZL2|K Chain K, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177772|pdb|2ZL2|L Chain L, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177773|pdb|2ZL2|M Chain M, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177774|pdb|2ZL2|N Chain N, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|2313923|gb|AAD07842.1| ATP-dependent clp protease proteolytic component (clpP)
           [Helicobacter pylori 26695]
 gi|107836977|gb|ABF84846.1| ATP-dependent clp protease proteolytic component [Helicobacter
           pylori HPAG1]
          Length = 196

 Score = 44.2 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I DS    ++ ++  +  +D    + + ++SPGG   +G +I+  +  ++   
Sbjct: 30  IVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     +   S +     L         ++ +         
Sbjct: 90  STICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNE------ 143

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +         +++++     ++    +D   + +  
Sbjct: 144 ------------------------ILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAK 179

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 180 EAKEYGLIDKV 190


>gi|238926240|ref|ZP_04658000.1| endopeptidase Clp [Selenomonas flueggei ATCC 43531]
 gi|238885920|gb|EEQ49558.1| endopeptidase Clp [Selenomonas flueggei ATCC 43531]
          Length = 197

 Score = 44.2 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+DS    ++ ++  +  +D    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 24  IIFLGGPIDDSVANVIVAQMLFLESEDPDKDIHLYINSPGGVVTAGLAIYDTMQYIKPDV 83

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + +     L                      
Sbjct: 84  STICVGQAASMGSILLTAGAKGKRYALPHARIMIHQPLGGAQGQST-------------- 129

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            +Q+    +         +++        K           +  
Sbjct: 130 ----------------DIQIQAKEILRLREVGNEILARHTGQDTAKINIDTERDNFMSAE 173

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 174 EAKEYGLIDEV 184


>gi|157164595|ref|YP_001465991.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           concisus 13826]
 gi|112801723|gb|EAT99067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           concisus 13826]
          Length = 196

 Score = 44.2 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+IED  +  ++ ++  +  +D    + + ++SPGG   +G +I+  +  +K   
Sbjct: 30  IVMLSGEIEDGMAASIVAQLLFLEAEDPDKDIYLYINSPGGVITSGFSIYDTMNYIKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     A   S +     L         ++           
Sbjct: 90  CTICIGQAASMGAFLLSCGAPGKRYALPNSRIMIHQPLGGARGQATDIE----------- 138

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216
                              +    +         +++++      K           + A
Sbjct: 139 -------------------IQAREILRLKEILNGILAKNTGQKLSKIVKDTERDFFMSSA 179

Query: 217 EAKKVGLIDVV 227
           EAK+ GL+D +
Sbjct: 180 EAKEYGLVDKI 190


>gi|253796908|gb|ACT35709.1| capsid protein [Wolbachia phage WO]
          Length = 133

 Score = 44.2 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   +  ++++ +Q  VD  Y  FV+L++ +RN+          G  + G +A ++GL D
Sbjct: 1   PHEPMTSESLESLQKEVDRLYEMFVQLIARNRNLSIQAIKSTEAGLYF-GEKAVEIGLAD 59

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
            V    E   +  +  V  +  ++ + N  +    
Sbjct: 60  GVTTFFEFINNHKSRSVSMTTDELIEENYRREILE 94


>gi|116333303|ref|YP_794830.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           brevis ATCC 367]
 gi|122270009|sp|Q03SM3|CLPP_LACBA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116098650|gb|ABJ63799.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lactobacillus
           brevis ATCC 367]
          Length = 198

 Score = 44.2 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IED     +I ++  +   DS   + + ++SPGG   +G AI+  +  +++  
Sbjct: 29  IIMLSGPIEDDMANAIIAQLLFLDAQDSTKDISLYINSPGGVVSSGLAIYDTMNFIQSDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             IT     + ++    S       A   + V            +  ++           
Sbjct: 89  QTITLGMAASMASVLASSGTKGKRFALPHAQVMIHQPSGGAQGQQTEIEIAARE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +  +     ++++E+   P ++           +  
Sbjct: 143 ------------------------ILKTRELINKILAENSGQPIERLNQDTERDNYLSAQ 178

Query: 217 EAKKVGLIDVVGG 229
           EA   GLID +  
Sbjct: 179 EAVDYGLIDHIMT 191


>gi|153209299|ref|ZP_01947334.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154706302|ref|YP_001424146.1| ATP-dependent Clp protease proteolytic subunit [Coxiella burnetii
           Dugway 5J108-111]
 gi|165924012|ref|ZP_02219844.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coxiella
           burnetii RSA 334]
 gi|212212797|ref|YP_002303733.1| ATP-dependent Clp protease proteolytic subunit [Coxiella burnetii
           CbuG_Q212]
 gi|212219038|ref|YP_002305825.1| ATP-dependent Clp protease proteolytic subunit [Coxiella burnetii
           CbuK_Q154]
 gi|189082453|sp|A9KDS6|CLPP_COXBN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706447|sp|B6J8W4|CLPP_COXB1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706448|sp|B6J0W0|CLPP_COXB2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|120575415|gb|EAX32039.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154355588|gb|ABS77050.1| ATP-dependent endopeptidase clp proteolytic subunit [Coxiella
           burnetii Dugway 5J108-111]
 gi|165916535|gb|EDR35139.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coxiella
           burnetii RSA 334]
 gi|212011207|gb|ACJ18588.1| ATP-dependent endopeptidase clp proteolytic subunit [Coxiella
           burnetii CbuG_Q212]
 gi|212013300|gb|ACJ20680.1| ATP-dependent endopeptidase clp proteolytic subunit [Coxiella
           burnetii CbuK_Q154]
          Length = 195

 Score = 44.2 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 65/196 (33%), Gaps = 35/196 (17%)

Query: 40  RIAIRGQIED---SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
            I + GQ+ED   +  + + +   S + +   + + ++SPGG+  +  AI+  +Q VK  
Sbjct: 30  VIFLVGQVEDHMANLAIAQMLFLESENPN-KDINLYINSPGGAVTSAMAIYDTMQFVKPD 88

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
              +      +A A  L   A         S V    VL  Y      +       + V 
Sbjct: 89  VRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVMIHQVLGGYQGQGTDIQIHAKQTQRVS 148

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215
                                             +++++      ++    ++   + T 
Sbjct: 149 ------------------------------DQLNQILAKHTGKDIERVEKDTNRDYFLTP 178

Query: 216 AEAKKVGLIDVVGGQE 231
            EA + GLID +  + 
Sbjct: 179 EEAVEYGLIDSIFTER 194


>gi|307245367|ref|ZP_07527455.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254322|ref|ZP_07536160.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258780|ref|ZP_07540512.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853708|gb|EFM85925.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862621|gb|EFM94577.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867131|gb|EFM98987.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 652

 Score = 44.2 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 71/219 (32%), Gaps = 37/219 (16%)

Query: 30  HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
            ++  +   A I+I  +I      +Q+  + ++ +    +   + + + SPGG  + G A
Sbjct: 5   KIQAKANDTAEISIYDEIGFWGVTAQQFAKDLKALGN--NLKQINLHIHSPGGDVFDGIA 62

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I+  ++     K     +  +AAS   +I+ A N I+  E +++                
Sbjct: 63  IYNLLKNHPANKT--VYIDGLAASMASVIAMAGNEIIMPENAMMMIH------------- 107

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
                    ++                   +    +        +  V+++     D   
Sbjct: 108 -----KPWGIQGGDA-----------DDMRKYADLLDKVESTLIMAYVAKTGKSESDLAE 151

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
           +L      TG E  + G  D +         + +  ++ 
Sbjct: 152 MLKVETWLTGKECVEQGFADKLADPLVAMACIQSKKLED 190


>gi|91228617|ref|ZP_01262535.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           alginolyticus 12G01]
 gi|254229904|ref|ZP_04923307.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio sp.
           Ex25]
 gi|262394815|ref|YP_003286669.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. Ex25]
 gi|269965580|ref|ZP_06179694.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           alginolyticus 40B]
 gi|91187849|gb|EAS74163.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           alginolyticus 12G01]
 gi|151937540|gb|EDN56395.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio sp.
           Ex25]
 gi|262338409|gb|ACY52204.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. Ex25]
 gi|269829805|gb|EEZ84040.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           alginolyticus 40B]
          Length = 208

 Score = 44.2 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L  +      +      I ++K 
Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQ 161

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                              L++E    P +            +  
Sbjct: 162 KLNK------------------------------LLAEHTGQPLEVIERDTDRDNFMSSE 191

Query: 217 EAKKVGLIDVV 227
           +A + G++D V
Sbjct: 192 QAVEYGIVDAV 202


>gi|332686182|ref|YP_004455956.1| ATP-dependent Clp protease proteolytic subunit [Melissococcus
           plutonius ATCC 35311]
 gi|332370191|dbj|BAK21147.1| ATP-dependent Clp protease proteolytic subunit [Melissococcus
           plutonius ATCC 35311]
          Length = 198

 Score = 44.2 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 64/192 (33%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G I+D  S  +I ++  +   DS   + + ++SPGGS  AG AIF  +  VK   
Sbjct: 29  IVMLSGPIDDNVSNSVIAQLLFLDAQDSEKDIYLYINSPGGSVSAGLAIFDTMNFVKADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +       A   + +     L         ++           
Sbjct: 89  QTIVLGIAASMGSFLLTAGQKGKRFALPNAEIMIHQPLGGAQGQATEIEIAAK------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   + ++     +++SE    P +     +D   + T  
Sbjct: 142 -----------------------HILNTRERLNKILSERTGQPIEVIEKDTDRDNFMTAE 178

Query: 217 EAKKVGLIDVVG 228
           EAK  GLID V 
Sbjct: 179 EAKAYGLIDDVM 190


>gi|284030228|ref|YP_003380159.1| endopeptidase Clp [Kribbella flavida DSM 17836]
 gi|283809521|gb|ADB31360.1| Endopeptidase Clp [Kribbella flavida DSM 17836]
          Length = 207

 Score = 44.2 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 59/180 (32%), Gaps = 31/180 (17%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
           ++  +  ++  ++ +D    + + ++SPGGS  AG AI+  +Q + N    +      + 
Sbjct: 44  NANAICAQMLLLNAEDPNKDIWLYINSPGGSVDAGMAIYDTMQYISNDVATVGMGLAASM 103

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
               L + A N   A   + +                                       
Sbjct: 104 GQFLLCAGAKNKRFALPHARIMMHQPSGGMGG---------------------------- 135

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVV 227
                 +++             +L++E      ++    +D  R +T  +AK+ G ID V
Sbjct: 136 --TASDIKIQAQQSLHIKAQLFKLIAEHTGQALEQVENDADRDRWFTADQAKEYGFIDHV 193


>gi|154487068|ref|ZP_02028475.1| hypothetical protein BIFADO_00906 [Bifidobacterium adolescentis
           L2-32]
 gi|154084931|gb|EDN83976.1| hypothetical protein BIFADO_00906 [Bifidobacterium adolescentis
           L2-32]
          Length = 233

 Score = 44.2 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 30/181 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    +++ ++SPGGS  A  AI+  +Q +K     +      +
Sbjct: 77  TSADDIMAQLLVLESQDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 136

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L + A    +    + V          + K                         
Sbjct: 137 AAAILLAAGAKGKRLMLPNARVLIHQPAIDQGFGKA------------------------ 172

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226
                  +++    +     W    +++      +K    +      T  EAK+ G++D 
Sbjct: 173 -----TEIEIQAKEMLRMREWLENTLAKHTGRDIEKIRKDIEVDTFLTAQEAKEYGIVDE 227

Query: 227 V 227
           V
Sbjct: 228 V 228


>gi|194471774|ref|ZP_03077758.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197249758|ref|YP_002145429.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205357584|ref|ZP_02571531.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205358475|ref|ZP_02656494.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205358901|ref|ZP_02665206.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|289827300|ref|ZP_06545983.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|194458138|gb|EDX46977.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197213461|gb|ACH50858.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205331008|gb|EDZ17772.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205334088|gb|EDZ20852.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205340153|gb|EDZ26917.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|321226026|gb|EFX51077.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
          Length = 243

 Score = 44.2 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 78  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 137

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 138 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 191

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 192 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAP 227

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 228 EAVEYGLVDSILT 240


>gi|332663509|ref|YP_004446297.1| ATP-dependent Clp protease proteolytic subunit [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332332323|gb|AEE49424.1| ATP-dependent Clp protease proteolytic subunit [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 215

 Score = 44.2 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 61/198 (30%), Gaps = 32/198 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D  +  ++ ++  +S  D    + + + SPGG  Y+G AI+  ++ + N  
Sbjct: 32  IIFLSGEVNDVMASIVVAQLLYLSSIDPKRQINMYIQSPGGVVYSGMAIYDTMKMISNPV 91

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             ++     +     L S       A   S +                            
Sbjct: 92  STVSMGFTGSMGTFLLSSGTPGKRYALAHSTIHMHPTGGGTRGY---------------- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                                ++        F  +  +S +   +        R     E
Sbjct: 136 -------------TEDVRIATREQERLQAQIFHLMGKQSGHSRKEIEDYFLRDRFLNAQE 182

Query: 218 AKKVGLIDVV-GGQEEVW 234
           A++ GL+D + G  +++ 
Sbjct: 183 AREFGLVDEILGDIQDLV 200


>gi|311280666|ref|YP_003942897.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterobacter
           cloacae SCF1]
 gi|308749861|gb|ADO49613.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterobacter
           cloacae SCF1]
          Length = 207

 Score = 44.2 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 102 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L+++       +        R  +  
Sbjct: 156 ------------------------ILKVKARMNELMAQHTGQSLAQIESDTERDRFLSAP 191

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 192 EAVEYGLVDSILT 204


>gi|291085757|ref|ZP_06571180.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Citrobacter
           youngae ATCC 29220]
 gi|291069764|gb|EFE07873.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Citrobacter
           youngae ATCC 29220]
          Length = 243

 Score = 44.2 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 78  VIFMTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 137

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 138 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 191

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  + +
Sbjct: 192 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAS 227

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 228 EAVEYGLVDSILT 240


>gi|262192152|ref|ZP_06050312.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae CT
           5369-93]
 gi|262031941|gb|EEY50519.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae CT
           5369-93]
          Length = 167

 Score = 44.2 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 33/190 (17%)

Query: 41  IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
           I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K    
Sbjct: 2   IFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVS 61

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            +      +  A  L   A         S V     L      +     + +  + + + 
Sbjct: 62  TVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLG---GFQGQASDIQIHAQEILTI 118

Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAE 217
             K                             RL++E    P +            +  +
Sbjct: 119 KNK---------------------------LNRLLAEHTGQPIEVIERDTDRDNFMSADQ 151

Query: 218 AKKVGLIDVV 227
           A + GL+D V
Sbjct: 152 AVEYGLVDAV 161


>gi|301311154|ref|ZP_07217082.1| serine protease, ClpP class [Bacteroides sp. 20_3]
 gi|300830728|gb|EFK61370.1| serine protease, ClpP class [Bacteroides sp. 20_3]
          Length = 459

 Score = 44.2 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALI 70
           ++  L  + ++              +  I I+ +I+++  +     +    +  SA A++
Sbjct: 4   LLTILTAIVLILAISLQSEAKEKSLIYTIDIKKEIDNTTWIYLHNGLSEAKQL-SADAIL 62

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + +++ GG   + +++  AI  + +  PV   +   AASAG LIS A   I   + + +G
Sbjct: 63  LHMNTYGGLLESADSMRTAI--LYSPIPVYVFIDNNAASAGALISIACKKIYMRKGANIG 120

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           +  V+ Q     P   +  +      ++  + + +     +                   
Sbjct: 121 AATVVNQTGAALPDKYQSYMRSMIRSTAEAQGKDTLIQNGDTIYKWKRD----------- 169

Query: 191 RLVSESRNIPYDKTLVLSDGR---IWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSI 246
            L++E+          L D       T  EA K G  D +    ++V             
Sbjct: 170 PLIAEAMVDDRVIVPNLIDSGKVLTLTYQEALKWGYCDGIAESPDQVITEYIG----CKD 225

Query: 247 RKIKDWNPPKNYWFCDLKNLSIS 269
            +IK + P    WF ++K   +S
Sbjct: 226 YEIKSYEP---SWFDNVKGFFMS 245


>gi|288555734|ref|YP_003427669.1| hypothetical protein BpOF4_13630 [Bacillus pseudofirmus OF4]
 gi|288546894|gb|ADC50777.1| hypothetical protein BpOF4_13630 [Bacillus pseudofirmus OF4]
          Length = 446

 Score = 44.2 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 65/136 (47%), Gaps = 3/136 (2%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIER 59
           M  +   I   +++ +++ + +  F +S     +   V  I +   +E      ++R  +
Sbjct: 1   MNRIRLNISLLFILCAMLLIPLQSFVYSETNTSDDTVVYYIPVEQTVERGLAAFMQRSFQ 60

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119
            + D+ A  +++ + +PGG+  A   I R +Q      P+I  V + A SAG  I+  ++
Sbjct: 61  SAADEGADYIVLEIHTPGGAVDAAGEIARLMQ--NTDIPIIAFVTKEAISAGAYIALNAD 118

Query: 120 IIVAAETSLVGSIGVL 135
            IV A  + +G+ GV+
Sbjct: 119 EIVMAPGTTMGAAGVI 134


>gi|149194680|ref|ZP_01871775.1| ATP-dependent Clp protease proteolytic subunit [Caminibacter
           mediatlanticus TB-2]
 gi|149135103|gb|EDM23584.1| ATP-dependent Clp protease proteolytic subunit [Caminibacter
           mediatlanticus TB-2]
          Length = 196

 Score = 44.2 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I ++G+I D     ++ ++  +  ++    + + ++SPGG   +G AI+  +  +K   
Sbjct: 30  IIMLQGEINDHTASLIVAQLLFLEAENPEKDIYLYINSPGGVVTSGFAIYDTMNYIKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S A     A   + +     L         ++           
Sbjct: 90  VTICMGQAASMGAFLLSSGAKGKRFALPHARIMIHQPLGGAQGQATDIEIHAKE------ 143

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +        ++++E+      K    ++   + +  
Sbjct: 144 ------------------------ILRMKKELNKILAENTGQSVRKIEKDTERDFFMSAE 179

Query: 217 EAKKVGLIDVV 227
           EA K GLID V
Sbjct: 180 EAMKYGLIDKV 190


>gi|320535322|ref|ZP_08035441.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
           phagedenis F0421]
 gi|320147822|gb|EFW39319.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
           phagedenis F0421]
          Length = 203

 Score = 44.2 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 63/195 (32%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  ++ ++  +   +    + + ++SPGGS  AG AI+  +Q ++ + 
Sbjct: 34  IIFVDGEINDTVADLIVAQLLFLESQNPDKDISLYINSPGGSVTAGLAIYDTMQHIRPKI 93

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L   ++    A  +S V               +      I  +K 
Sbjct: 94  QTICLGQAASMAAVLLAGGSAGKRFALPSSRVMIHQPWGGVQGQASDISIQAKEIIRLKK 153

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
             +K                                +E       +    +      +  
Sbjct: 154 LTIKYF------------------------------AEHTGKSEKEVADDMERDFFMSAE 183

Query: 217 EAKKVGLIDVVGGQE 231
           EAK  G++D V  + 
Sbjct: 184 EAKAYGIVDTVMNRR 198


>gi|239638102|ref|ZP_04679061.1| serine protease [Staphylococcus warneri L37603]
 gi|239596385|gb|EEQ78923.1| serine protease [Staphylococcus warneri L37603]
          Length = 258

 Score = 44.2 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 76/241 (31%), Gaps = 37/241 (15%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            I G     Q + E+++          ++V+++S GG  ++G  I+  +++         
Sbjct: 16  TIEGMTISPQTVREQLKA---MGDVDEVVVNINSNGGDVFSGVTIYNMLRRFDA------ 66

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                       I+   + + A+  S++   G     P     +        +V     +
Sbjct: 67  -----------HITVNVDGLAASIASVIAMAGDTINMPGNAMLMVHNAW---TVNEGDAR 112

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220
           +      ++      +    VD +      L                D   W T  EAKK
Sbjct: 113 SFKKRAEDLERINSVVFNSYVDKNPDIDHAL-----------LQDYMDEETWLTAKEAKK 161

Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
           +GLID +  +     +     +      +  +   ++         S    +ED +  ++
Sbjct: 162 LGLIDNI-TENSRVAAATTSTILGGETFMTRYR-NEDSQQPGQPKESSEITVEDVMDKLE 219

Query: 281 Q 281
           +
Sbjct: 220 E 220


>gi|315924138|ref|ZP_07920364.1| ATP-dependent Clp protease, protease subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622540|gb|EFV02495.1| ATP-dependent Clp protease, protease subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 194

 Score = 44.2 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 62/196 (31%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I D     ++ ++  +  ++    + + ++SPGGS  AG AI   +  +K   
Sbjct: 29  IVFLDGEITDETASLVVAQLVFLEAENPDEDIFMYINSPGGSVTAGFAIMDTMNFIKCDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A     A   + +     L                      
Sbjct: 89  STLCYGMAASMGAFLLAAGAKGKRQALPNAEIMIHQPLGGAQGQSS-------------- 134

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216
                            V++    +  +     R++SE+    ++            +  
Sbjct: 135 ----------------DVEIHARHLLETKEKLNRILSENSGQSFETIVKDTDRDHFMSAE 178

Query: 217 EAKKVGLIDVVGGQEE 232
           EAK  GLID V    +
Sbjct: 179 EAKTYGLIDQVITSRD 194


>gi|310287698|ref|YP_003938956.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           bifidum S17]
 gi|309251634|gb|ADO53382.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           bifidum S17]
          Length = 239

 Score = 44.2 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 30/181 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D +  +++ ++SPGGS  A  AI+  +Q +K     +      +
Sbjct: 83  TSADDIMAQLLVLESQDPSRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 142

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L + A    +    + V          + K                         
Sbjct: 143 AAAILLAAGAKGKRLMLPNARVLIHQPAIDQGFGKA------------------------ 178

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226
                  +++    +     W    +++      +K    +      T  EAK  G++D 
Sbjct: 179 -----TEIEIQAKEMLRMREWLENTLAKHTGQDVEKIRKDIEVDTFLTAQEAKDYGIVDE 233

Query: 227 V 227
           V
Sbjct: 234 V 234


>gi|185177785|pdb|2ZL3|A Chain A, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177786|pdb|2ZL3|B Chain B, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177787|pdb|2ZL3|C Chain C, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177788|pdb|2ZL3|D Chain D, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177789|pdb|2ZL3|E Chain E, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177790|pdb|2ZL3|F Chain F, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177791|pdb|2ZL3|G Chain G, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177792|pdb|2ZL3|H Chain H, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177793|pdb|2ZL3|I Chain I, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177794|pdb|2ZL3|J Chain J, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177795|pdb|2ZL3|K Chain K, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177796|pdb|2ZL3|L Chain L, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177797|pdb|2ZL3|M Chain M, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177798|pdb|2ZL3|N Chain N, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177799|pdb|2ZL4|A Chain A, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177801|pdb|2ZL4|B Chain B, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177803|pdb|2ZL4|C Chain C, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177805|pdb|2ZL4|D Chain D, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177807|pdb|2ZL4|E Chain E, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177809|pdb|2ZL4|F Chain F, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177811|pdb|2ZL4|G Chain G, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177813|pdb|2ZL4|H Chain H, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177815|pdb|2ZL4|I Chain I, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177817|pdb|2ZL4|J Chain J, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177819|pdb|2ZL4|K Chain K, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177821|pdb|2ZL4|L Chain L, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177823|pdb|2ZL4|M Chain M, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177825|pdb|2ZL4|N Chain N, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
          Length = 196

 Score = 44.2 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I DS    ++ ++  +  +D    + + ++SPGG   +G +I+  +  ++   
Sbjct: 30  IVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      A  A  L   A     +   S +     L         ++ +         
Sbjct: 90  STICIGQAAAMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNE------ 143

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +         +++++     ++    +D   + +  
Sbjct: 144 ------------------------ILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAK 179

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 180 EAKEYGLIDKV 190


>gi|152968972|ref|YP_001334081.1| ATP-dependent Clp protease proteolytic subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|262042473|ref|ZP_06015632.1| ATP-dependent Clp protease [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330011533|ref|ZP_08307119.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Klebsiella sp. MS 92-3]
 gi|150953821|gb|ABR75851.1| ATP-dependent Clp protease proteolytic subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|259040177|gb|EEW41289.1| ATP-dependent Clp protease [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328534150|gb|EGF60785.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Klebsiella sp. MS 92-3]
          Length = 194

 Score = 44.2 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 29  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 89  STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  + A
Sbjct: 143 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAA 178

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 179 EAVEYGLVDSILT 191


>gi|15895898|ref|NP_349247.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           acetobutylicum ATCC 824]
 gi|18202304|sp|P58276|CLPP_CLOAB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|15025667|gb|AAK80587.1|AE007761_6 Protease subunits of ATP-dependent protease, ClpP [Clostridium
           acetobutylicum ATCC 824]
 gi|325510050|gb|ADZ21686.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           acetobutylicum EA 2018]
          Length = 193

 Score = 44.2 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 31/178 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGGS  +G AI+  +Q VK     I      +  +  
Sbjct: 44  VVAQLLFLESEDPDKDIYLYINSPGGSITSGMAIYDTMQYVKPDVSTICIGMAASMGSFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     A   S +     L      K     +G+  + +     K           
Sbjct: 104 LTAGAPGKRFALPNSEIMIHQPLG---GFKGQATDIGIHAQRILEIKKK----------- 149

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGG 229
                              + SE    P +     +D   + +  EAK+ GLID V  
Sbjct: 150 ----------------LNSIYSERTGKPIEVIEKDTDRDHFLSAEEAKEYGLIDEVIT 191


>gi|332160749|ref|YP_004297326.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318604628|emb|CBY26126.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664979|gb|ADZ41623.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859950|emb|CBX70279.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           enterocolitica W22703]
          Length = 207

 Score = 44.2 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 62/196 (31%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  +  ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  IIFLTGQVEDHMANLITAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +      ++           
Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L+++      ++        R  +  
Sbjct: 156 ------------------------ILKVKSRMNELMAKHTGKSLEEIERDTERDRFLSAD 191

Query: 217 EAKKVGLIDVVGGQEE 232
           EA K GL+D V  + +
Sbjct: 192 EAVKYGLVDSVFTRRD 207


>gi|254779232|ref|YP_003057337.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           B38]
 gi|254001143|emb|CAX29101.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Helicobacter pylori B38]
          Length = 196

 Score = 44.2 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I DS    ++ ++  +  +D    + + ++SPGG   +G +I+  +  ++   
Sbjct: 30  IVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     +   S +     L         ++ +         
Sbjct: 90  STICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNE------ 143

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +         +++++     ++    +D   + +  
Sbjct: 144 ------------------------ILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAK 179

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 180 EAKEYGLIDKV 190


>gi|319763664|ref|YP_004127601.1| ATP-dependent clp protease, proteolytic subunit clpp
           [Alicycliphilus denitrificans BC]
 gi|330824071|ref|YP_004387374.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicycliphilus denitrificans K601]
 gi|317118225|gb|ADV00714.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicycliphilus denitrificans BC]
 gi|329309443|gb|AEB83858.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicycliphilus denitrificans K601]
          Length = 202

 Score = 44.2 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 65/191 (34%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D     ++ ++  +  ++    +   ++SPGGS  AG AI+  +Q +K   
Sbjct: 37  VIFLVGEVNDQTANLVVAQLLFLESENPDKDISFYINSPGGSVTAGMAIYDTMQFIKPDV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A     +   S +    VL         ++           
Sbjct: 97  STLCCGFAASMGAFLLAAGAKGKRFSLPNSKIMIHQVLGGARGQATDIE----------- 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                              +    +  +     R+++E      +K    ++   + T  
Sbjct: 146 -------------------IHARDILRTKDQMNRILAERTGQSIEKVKADTERDYFMTAD 186

Query: 217 EAKKVGLIDVV 227
           EA+  GL+D V
Sbjct: 187 EARDYGLVDQV 197


>gi|242240292|ref|YP_002988473.1| ATP-dependent Clp protease proteolytic subunit ClpP [Dickeya
           dadantii Ech703]
 gi|242132349|gb|ACS86651.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dickeya
           dadantii Ech703]
          Length = 207

 Score = 44.2 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 60/196 (30%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED     ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDYMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +      ++           
Sbjct: 102 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L+++      D         R  +  
Sbjct: 156 ------------------------ILKVKARMNELMAKHTGQSLDIIERDTERDRFLSAG 191

Query: 217 EAKKVGLIDVVGGQEE 232
           EA + GL+D V    E
Sbjct: 192 EAVEYGLVDSVLTHRE 207


>gi|332158438|ref|YP_004423717.1| hypothetical protein PNA2_0797 [Pyrococcus sp. NA2]
 gi|331033901|gb|AEC51713.1| hypothetical protein PNA2_0797 [Pyrococcus sp. NA2]
          Length = 280

 Score = 44.2 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 11/178 (6%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+E++  I    +D     +I    +PGG   A   I +A++       VI   + M
Sbjct: 73  IEDSEEVLRAIRMAPKDKPIDLII---HTPGGLVLAATQIAKALKDHPAETRVIVPHYAM 129

Query: 107 AASAGYLISCASNIIVAAETSLVGSIG-VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           +   G LI+ A++ I+    +++G +   L QYP            +  V    +     
Sbjct: 130 SG--GTLIALAADKIIMDPHAVLGPVDPQLGQYPAPSIVRAVQKKGVDKVDDQTLILADV 187

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
               +      +   + D       R ++E            +     T  EA+K+GL
Sbjct: 188 AEKAIKQVRDFIFDLLKDKYGEEKARELAE-----ILTEGRWTHDYPITVEEARKLGL 240


>gi|330829918|ref|YP_004392870.1| ATP-dependent Clp protease proteolytic subunit [Aeromonas veronii
           B565]
 gi|328805054|gb|AEB50253.1| ATP-dependent Clp protease proteolytic subunit [Aeromonas veronii
           B565]
          Length = 207

 Score = 44.2 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 57/190 (30%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIYIYINSPGGSVTAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         + V     L                      
Sbjct: 102 STVCMGQACSMGAFLLAGGAKGKRFCLPNARVMIHQPLG--------------------- 140

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                                      ++H    + +  R+   D           +  +
Sbjct: 141 GFQGQASDIQIHAQEILKIKNTLNERLAFHTGQDMATIERDTDRDN--------FMSAEQ 192

Query: 218 AKKVGLIDVV 227
           A   GL+D V
Sbjct: 193 AVAYGLVDGV 202


>gi|317492909|ref|ZP_07951333.1| Clp protease [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919031|gb|EFV40366.1| Clp protease [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 206

 Score = 44.2 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 62/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 41  IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDV 100

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +      ++           
Sbjct: 101 STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 154

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L+++    P ++        R  +  
Sbjct: 155 ------------------------ILKVKARMNELMAKHSGKPLEEIERDTERDRFLSAD 190

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D V  
Sbjct: 191 EAVEYGLVDSVMT 203


>gi|227833713|ref|YP_002835420.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184720|ref|ZP_06044141.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454729|gb|ACP33482.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 207

 Score = 44.2 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 53/185 (28%), Gaps = 30/185 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    + + ++SPGGS  A  AI+  ++ V+     +      +
Sbjct: 48  TSANDIMAQLLVLESQDPDRDITMYINSPGGSFTALMAIYDTMRYVRPDVQTVCLGQAAS 107

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L + A     A   S V       Q                              
Sbjct: 108 AAAVLLAAGAPGKRAALPNSRVLIHQPRTQ--------------------GTQGQVSDLE 147

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226
            E N                      +E      ++        +I T  EA   GLID 
Sbjct: 148 IEANEIERMRRLMEETL---------AEHTGRTAEQVRIDTDRDKILTAQEAVDYGLIDT 198

Query: 227 VGGQE 231
           V    
Sbjct: 199 VFDYR 203


>gi|170767754|ref|ZP_02902207.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           albertii TW07627]
 gi|170123242|gb|EDS92173.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           albertii TW07627]
          Length = 207

 Score = 44.2 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 102 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 156 ------------------------ILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAP 191

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 192 EAVEYGLVDSILT 204


>gi|315230668|ref|YP_004071104.1| hypothetical protein TERMP_00905 [Thermococcus barophilus MP]
 gi|315183696|gb|ADT83881.1| hypothetical protein TERMP_00905 [Thermococcus barophilus MP]
          Length = 279

 Score = 44.2 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 68/184 (36%), Gaps = 23/184 (12%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+E++  I    +D     +I    +PGG   A   I +A++       VI   + M
Sbjct: 73  IEDSEEILRAIRMAPKDKPIDLII---HTPGGLVLAATQIAKALKDHPAETRVIIPHYAM 129

Query: 107 AASAGYLISCASNIIVAAETSLVGSIG-VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           +   G LI+ A++ I+    +++G +   L QYP               V++   K    
Sbjct: 130 SG--GTLIALAADKIIMDPHAVLGPVDPQLGQYPAPS-----------IVRAVEKKGPEK 176

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAK 219
              +    A    + +       +  L  +       +   +     WT        EA+
Sbjct: 177 VDDQTLILADVAEKAINQVRNFVYELLKDKYGEEKAKELAQILTEGRWTHDYPITVEEAQ 236

Query: 220 KVGL 223
           K+GL
Sbjct: 237 KLGL 240


>gi|56414396|ref|YP_151471.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363316|ref|YP_002142953.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|67460194|sp|Q5PFN4|CLPP_SALPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|226706471|sp|B5BD83|CLPP_SALPK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56128653|gb|AAV78159.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094793|emb|CAR60326.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 207

 Score = 44.2 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGISIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 102 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 156 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAP 191

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 192 EAVEYGLVDSILT 204


>gi|15800167|ref|NP_286179.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 EDL933]
 gi|15829745|ref|NP_308518.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|16128422|ref|NP_414971.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli str. K-12 substr. MG1655]
 gi|26246448|ref|NP_752487.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           CFT073]
 gi|30061939|ref|NP_836110.1| ATP-dependent Clp protease proteolytic subunit [Shigella flexneri
           2a str. 2457T]
 gi|56479658|ref|NP_706331.2| ATP-dependent Clp protease proteolytic subunit [Shigella flexneri
           2a str. 301]
 gi|74311012|ref|YP_309431.1| ATP-dependent Clp protease proteolytic subunit [Shigella sonnei
           Ss046]
 gi|82542925|ref|YP_406872.1| ATP-dependent Clp protease proteolytic subunit [Shigella boydii
           Sb227]
 gi|82775656|ref|YP_402003.1| ATP-dependent Clp protease proteolytic subunit [Shigella
           dysenteriae Sd197]
 gi|89107307|ref|AP_001087.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli str. K-12 substr. W3110]
 gi|91209511|ref|YP_539497.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           UTI89]
 gi|110640698|ref|YP_668426.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           536]
 gi|110804465|ref|YP_687985.1| ATP-dependent Clp protease proteolytic subunit [Shigella flexneri 5
           str. 8401]
 gi|117622697|ref|YP_851610.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           APEC O1]
 gi|157158299|ref|YP_001461624.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           E24377A]
 gi|157159964|ref|YP_001457282.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           HS]
 gi|168754541|ref|ZP_02779548.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4401]
 gi|168768391|ref|ZP_02793398.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4486]
 gi|168778128|ref|ZP_02803135.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4196]
 gi|168778929|ref|ZP_02803936.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4076]
 gi|168786287|ref|ZP_02811294.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC869]
 gi|170021190|ref|YP_001726144.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           ATCC 8739]
 gi|170080023|ref|YP_001729343.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli str. K-12 substr. DH10B]
 gi|170683276|ref|YP_001742581.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           SMS-3-5]
 gi|187731303|ref|YP_001879148.1| ATP-dependent Clp protease proteolytic subunit [Shigella boydii CDC
           3083-94]
 gi|188492597|ref|ZP_02999867.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 53638]
 gi|191174674|ref|ZP_03036146.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli F11]
 gi|193064129|ref|ZP_03045213.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli E22]
 gi|195938496|ref|ZP_03083878.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809540|ref|ZP_03251877.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4206]
 gi|208815859|ref|ZP_03257038.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4045]
 gi|208822964|ref|ZP_03263282.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4042]
 gi|209917654|ref|YP_002291738.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           SE11]
 gi|215485518|ref|YP_002327949.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217326412|ref|ZP_03442496.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. TW14588]
 gi|218549895|ref|YP_002383686.1| ATP-dependent Clp protease proteolytic subunit [Escherichia
           fergusonii ATCC 35469]
 gi|218553004|ref|YP_002385917.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           IAI1]
 gi|218557347|ref|YP_002390260.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           S88]
 gi|218688301|ref|YP_002396513.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           ED1a]
 gi|218693900|ref|YP_002401567.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           55989]
 gi|218698651|ref|YP_002406280.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           IAI39]
 gi|218703721|ref|YP_002411240.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           UMN026]
 gi|227884552|ref|ZP_04002357.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           83972]
 gi|238899725|ref|YP_002925521.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli BW2952]
 gi|253774574|ref|YP_003037405.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160506|ref|YP_003043614.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli B
           str. REL606]
 gi|254791621|ref|YP_003076458.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. TW14359]
 gi|256020408|ref|ZP_05434273.1| ATP-dependent Clp protease proteolytic subunit [Shigella sp. D9]
 gi|256023945|ref|ZP_05437810.1| ATP-dependent Clp protease proteolytic subunit [Escherichia sp.
           4_1_40B]
 gi|260842638|ref|YP_003220416.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O103:H2 str. 12009]
 gi|260853660|ref|YP_003227551.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O26:H11 str. 11368]
 gi|260866598|ref|YP_003233000.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O111:H- str. 11128]
 gi|261223919|ref|ZP_05938200.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256367|ref|ZP_05948900.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291281344|ref|YP_003498162.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O55:H7 str. CB9615]
 gi|293403558|ref|ZP_06647649.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           FVEC1412]
 gi|293408587|ref|ZP_06652426.1| Clp protease [Escherichia coli B354]
 gi|297516115|ref|ZP_06934501.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           OP50]
 gi|298379170|ref|ZP_06989051.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           FVEC1302]
 gi|300818231|ref|ZP_07098442.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 107-1]
 gi|300820317|ref|ZP_07100469.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 119-7]
 gi|300903295|ref|ZP_07121223.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 84-1]
 gi|300918180|ref|ZP_07134787.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 115-1]
 gi|300930260|ref|ZP_07145673.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 187-1]
 gi|300947910|ref|ZP_07162058.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 116-1]
 gi|301025667|ref|ZP_07189185.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 196-1]
 gi|301330696|ref|ZP_07223298.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 78-1]
 gi|306813096|ref|ZP_07447289.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           NC101]
 gi|307137081|ref|ZP_07496437.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           H736]
 gi|307312185|ref|ZP_07591821.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli W]
 gi|309794830|ref|ZP_07689251.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 145-7]
 gi|331640957|ref|ZP_08342092.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli H736]
 gi|331645613|ref|ZP_08346717.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli M605]
 gi|331651375|ref|ZP_08352400.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli M718]
 gi|331656494|ref|ZP_08357456.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA206]
 gi|331661818|ref|ZP_08362741.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA143]
 gi|331666792|ref|ZP_08367666.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA271]
 gi|331671984|ref|ZP_08372780.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA280]
 gi|331676109|ref|ZP_08376821.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli H591]
 gi|331681832|ref|ZP_08382465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli H299]
 gi|62288033|sp|P0A6G7|CLPP_ECOLI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Caseinolytic protease; AltName:
           Full=Endopeptidase Clp; AltName: Full=Heat shock protein
           F21.5; AltName: Full=Protease Ti; Flags: Precursor
 gi|62288034|sp|P0A6G8|CLPP_ECOL6 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|62288035|sp|P0A6G9|CLPP_ECO57 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|62288036|sp|P0A6H0|CLPP_SHIFL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|90183183|sp|Q325G4|CLPP_SHIBS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|90183184|sp|Q32JJ3|CLPP_SHIDS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|110816465|sp|Q3Z4W6|CLPP_SHISS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116243134|sp|Q0TKK4|CLPP_ECOL5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|116243136|sp|Q1RF98|CLPP_ECOUT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|122957620|sp|Q0T7E6|CLPP_SHIF8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201821|sp|A1A8A6|CLPP_ECOK1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|167008648|sp|A7ZIJ5|CLPP_ECO24 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|167008649|sp|A7ZX95|CLPP_ECOHS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082457|sp|B1J011|CLPP_ECOLC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|310942734|pdb|3MT6|R Chain R, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942735|pdb|3MT6|S Chain S, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942736|pdb|3MT6|T Chain T, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942737|pdb|3MT6|U Chain U, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942738|pdb|3MT6|O Chain O, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942739|pdb|3MT6|P Chain P, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942740|pdb|3MT6|Q Chain Q, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942741|pdb|3MT6|Y Chain Y, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942742|pdb|3MT6|Z Chain Z, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942743|pdb|3MT6|AA Chain a, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942744|pdb|3MT6|BB Chain b, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942745|pdb|3MT6|V Chain V, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942746|pdb|3MT6|W Chain W, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942747|pdb|3MT6|X Chain X, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942748|pdb|3MT6|M Chain M, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942749|pdb|3MT6|L Chain L, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942750|pdb|3MT6|K Chain K, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942751|pdb|3MT6|J Chain J, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942752|pdb|3MT6|I Chain I, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942753|pdb|3MT6|H Chain H, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942754|pdb|3MT6|N Chain N, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942755|pdb|3MT6|F Chain F, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942756|pdb|3MT6|E Chain E, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942757|pdb|3MT6|D Chain D, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942758|pdb|3MT6|C Chain C, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942759|pdb|3MT6|B Chain B, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942760|pdb|3MT6|A Chain A, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942761|pdb|3MT6|G Chain G, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|12513299|gb|AAG54787.1|AE005223_2 ATP-dependent proteolytic subunit of clpA-clpP serine protease,
           heat shock protein F21.5 [Escherichia coli O157:H7 str.
           EDL933]
 gi|26106846|gb|AAN79031.1|AE016756_214 ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           CFT073]
 gi|145556|gb|AAA23588.1| ATP-dependent protease (clpP) [Escherichia coli]
 gi|1773121|gb|AAB40193.1| ATP-dependent Clp proteinase [Escherichia coli]
 gi|1786641|gb|AAC73540.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli str. K-12 substr. MG1655]
 gi|13359948|dbj|BAB33914.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP
           [Escherichia coli O157:H7 str. Sakai]
 gi|30040183|gb|AAP15916.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease,
           heat shock protein F21.5 [Shigella flexneri 2a str.
           2457T]
 gi|56383209|gb|AAN42038.2| ATP-dependent proteolytic subunit of clpA-clpP serine protease,
           heat shock protein F21.5 [Shigella flexneri 2a str. 301]
 gi|73854489|gb|AAZ87196.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease
           [Shigella sonnei Ss046]
 gi|81239804|gb|ABB60514.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease
           [Shigella dysenteriae Sd197]
 gi|81244336|gb|ABB65044.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease
           [Shigella boydii Sb227]
 gi|85674577|dbj|BAE76217.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli str. K12 substr. W3110]
 gi|91071085|gb|ABE05966.1| ATP-dependent proteolytic subunit of clpA-ClpP serine protease,
           heat shock protein F21.5 [Escherichia coli UTI89]
 gi|110342290|gb|ABG68527.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           536]
 gi|110614013|gb|ABF02680.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease
           [Shigella flexneri 5 str. 8401]
 gi|115511821|gb|ABI99895.1| ATP-dependent proteolytic subunit of ClpA-ClpP serine protease
           [Escherichia coli APEC O1]
 gi|157065644|gb|ABV04899.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli HS]
 gi|157080329|gb|ABV20037.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli E24377A]
 gi|169756118|gb|ACA78817.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli ATCC 8739]
 gi|169887858|gb|ACB01565.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli str. K-12 substr. DH10B]
 gi|170520994|gb|ACB19172.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli SMS-3-5]
 gi|187428295|gb|ACD07569.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           boydii CDC 3083-94]
 gi|187766815|gb|EDU30659.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4196]
 gi|188487796|gb|EDU62899.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 53638]
 gi|189003087|gb|EDU72073.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4076]
 gi|189358046|gb|EDU76465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4401]
 gi|189362475|gb|EDU80894.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4486]
 gi|189373600|gb|EDU92016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC869]
 gi|190905047|gb|EDV64714.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli F11]
 gi|192929158|gb|EDV82768.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli E22]
 gi|208729341|gb|EDZ78942.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4206]
 gi|208732507|gb|EDZ81195.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4045]
 gi|208737157|gb|EDZ84841.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4042]
 gi|209743854|gb|ACI70234.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP
           [Escherichia coli]
 gi|209743856|gb|ACI70235.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP
           [Escherichia coli]
 gi|209743858|gb|ACI70236.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP
           [Escherichia coli]
 gi|209743860|gb|ACI70237.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP
           [Escherichia coli]
 gi|209743862|gb|ACI70238.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP
           [Escherichia coli]
 gi|209910913|dbj|BAG75987.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           SE11]
 gi|215263590|emb|CAS07920.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli O127:H6 str. E2348/69]
 gi|217322633|gb|EEC31057.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. TW14588]
 gi|218350632|emb|CAU96324.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli 55989]
 gi|218357436|emb|CAQ90075.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia fergusonii ATCC 35469]
 gi|218359772|emb|CAQ97313.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli IAI1]
 gi|218364116|emb|CAR01781.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli S88]
 gi|218368637|emb|CAR16376.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli IAI39]
 gi|218425865|emb|CAR06671.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli ED1a]
 gi|218430818|emb|CAR11692.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli UMN026]
 gi|222032232|emb|CAP74971.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           LF82]
 gi|227838638|gb|EEJ49104.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           83972]
 gi|238863325|gb|ACR65323.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli BW2952]
 gi|242376218|emb|CAQ30909.1| clpP, subunit of ClpP serine protease, ClpAP, ClpXP and ClpAXP
           [Escherichia coli BL21(DE3)]
 gi|253325618|gb|ACT30220.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972407|gb|ACT38078.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli B
           str. REL606]
 gi|253976617|gb|ACT42287.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           BL21(DE3)]
 gi|254591021|gb|ACT70382.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli O157:H7 str. TW14359]
 gi|257752309|dbj|BAI23811.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O26:H11 str. 11368]
 gi|257757785|dbj|BAI29282.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O103:H2 str. 12009]
 gi|257762954|dbj|BAI34449.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O111:H- str. 11128]
 gi|260450376|gb|ACX40798.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli DH1]
 gi|281177608|dbj|BAI53938.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           SE15]
 gi|281599777|gb|ADA72761.1| ATP-dependent Clp protease proteolytic subunit [Shigella flexneri
           2002017]
 gi|284920247|emb|CBG33306.1| ATP-dependent clp protease proteolytic subunit [Escherichia coli
           042]
 gi|290761217|gb|ADD55178.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O55:H7 str. CB9615]
 gi|291429411|gb|EFF02431.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           FVEC1412]
 gi|291471765|gb|EFF14248.1| Clp protease [Escherichia coli B354]
 gi|294492533|gb|ADE91289.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli IHE3034]
 gi|298280283|gb|EFI21787.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           FVEC1302]
 gi|299880021|gb|EFI88232.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 196-1]
 gi|300404590|gb|EFJ88128.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 84-1]
 gi|300414631|gb|EFJ97941.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 115-1]
 gi|300452510|gb|EFK16130.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 116-1]
 gi|300461832|gb|EFK25325.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 187-1]
 gi|300527102|gb|EFK48171.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 119-7]
 gi|300529122|gb|EFK50184.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 107-1]
 gi|300843357|gb|EFK71117.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 78-1]
 gi|305853859|gb|EFM54298.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           NC101]
 gi|306907687|gb|EFN38189.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli W]
 gi|307552344|gb|ADN45119.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           ABU 83972]
 gi|307628093|gb|ADN72397.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           UM146]
 gi|308121483|gb|EFO58745.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 145-7]
 gi|309700698|emb|CBI99994.1| ATP-dependent clp protease proteolytic subunit [Escherichia coli
           ETEC H10407]
 gi|312945015|gb|ADR25842.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315059717|gb|ADT74044.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli W]
 gi|315135119|dbj|BAJ42278.1| conserved hypothetical protein [Escherichia coli DH1]
 gi|320173743|gb|EFW48926.1| ATP-dependent Clp protease proteolytic subunit [Shigella
           dysenteriae CDC 74-1112]
 gi|320178281|gb|EFW53255.1| ATP-dependent Clp protease proteolytic subunit [Shigella boydii
           ATCC 9905]
 gi|320186067|gb|EFW60812.1| ATP-dependent Clp protease proteolytic subunit [Shigella flexneri
           CDC 796-83]
 gi|320192853|gb|EFW67493.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. EC1212]
 gi|320197089|gb|EFW71708.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           WV_060327]
 gi|320201681|gb|EFW76257.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           EC4100B]
 gi|320638432|gb|EFX08146.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. G5101]
 gi|320643812|gb|EFX12935.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H- str. 493-89]
 gi|320649163|gb|EFX17741.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H- str. H 2687]
 gi|320656056|gb|EFX23972.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320661206|gb|EFX28637.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665182|gb|EFX32275.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323379718|gb|ADX51986.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli KO11]
 gi|323938623|gb|EGB34872.1| Clp protease [Escherichia coli E1520]
 gi|323943244|gb|EGB39400.1| Clp protease [Escherichia coli E482]
 gi|323945342|gb|EGB41398.1| Clp protease [Escherichia coli H120]
 gi|323952951|gb|EGB48819.1| Clp protease [Escherichia coli H252]
 gi|323958630|gb|EGB54333.1| Clp protease [Escherichia coli H263]
 gi|323963427|gb|EGB58989.1| Clp protease [Escherichia coli H489]
 gi|323965124|gb|EGB60583.1| Clp protease [Escherichia coli M863]
 gi|323972291|gb|EGB67501.1| Clp protease [Escherichia coli TA007]
 gi|323976078|gb|EGB71171.1| Clp protease [Escherichia coli TW10509]
 gi|324114664|gb|EGC08632.1| Clp protease [Escherichia fergusonii B253]
 gi|324116925|gb|EGC10838.1| Clp protease [Escherichia coli E1167]
 gi|326341201|gb|EGD64993.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. 1044]
 gi|326346024|gb|EGD69763.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. 1125]
 gi|330910231|gb|EGH38741.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           AA86]
 gi|331037755|gb|EGI09975.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli H736]
 gi|331045775|gb|EGI17901.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli M605]
 gi|331051116|gb|EGI23168.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli M718]
 gi|331054742|gb|EGI26751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA206]
 gi|331060240|gb|EGI32204.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA143]
 gi|331066016|gb|EGI37900.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA271]
 gi|331070973|gb|EGI42332.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA280]
 gi|331076167|gb|EGI47449.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli H591]
 gi|331081034|gb|EGI52199.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli H299]
          Length = 207

 Score = 44.2 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 102 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 156 ------------------------ILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAP 191

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 192 EAVEYGLVDSILT 204


>gi|310778837|ref|YP_003967170.1| peptidase S14 ClpP [Ilyobacter polytropus DSM 2926]
 gi|309748160|gb|ADO82822.1| peptidase S14 ClpP [Ilyobacter polytropus DSM 2926]
          Length = 360

 Score = 43.8 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 72/237 (30%), Gaps = 40/237 (16%)

Query: 41  IAIRGQIED----SQELIER---IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
           + I G+I       + ++        +       ++ + ++SPGGS     AI+  +++ 
Sbjct: 20  LRIYGEITKFSWWDETVVTASDFARELEELKDTESINLCINSPGGSVTEAHAIYNMLKRY 79

Query: 94  K--NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
              N   + T +  +AASA   I+ A + I     + +    V          L K    
Sbjct: 80  AKANNVKITTYIDGVAASAASYIAMAGDEICMGLGASLMIHNVNGGAWGESKDLRKTADL 139

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
           +                                     + +     N+  +    L +  
Sbjct: 140 MD------------------------------KLKENIIDIYVTQSNLSREVISNLMNEE 169

Query: 212 IW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
            W T  EA + G ID +   E +          + I       PP+     ++K  +
Sbjct: 170 TWMTPEEALEYGFIDKIETYETISDDDIDNLFTREITNSIKALPPRISQLRNVKKQA 226


>gi|253575671|ref|ZP_04853007.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845009|gb|EES73021.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 196

 Score = 43.8 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D     +I ++  ++ +D    + + ++SPGGS  AG  I+  +Q +K   
Sbjct: 29  IIFLSNAIDDEVANLVIAQLLFLAAEDPEKDIHLYINSPGGSVTAGMGIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   S V     L                      
Sbjct: 89  STICVGMAASMGSLLLTAGAPGKRYALPNSEVMIHQPLGGVRGQ---------------- 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            +++  D +  +     ++  E    P +K    +D   + +  
Sbjct: 133 --------------ATDIKIHADWIIKTRQKLNQIYVERTGQPLEKIERDTDRDFFMSAE 178

Query: 217 EAKKVGLIDVV 227
           EAK  G+ID V
Sbjct: 179 EAKAYGIIDQV 189


>gi|219885303|gb|ACL53026.1| unknown [Zea mays]
          Length = 302

 Score = 43.8 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++    + + ++SPGG   AG AI+  +Q ++   
Sbjct: 103 IVCIHGPIADDTASLVVAQLLFLESENPLKPVHLYINSPGGVVTAGLAIYDTMQYIR--- 159

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                             C    +   + + +GS+ +    P  +  L    V I     
Sbjct: 160 ------------------CPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVMIHQPSG 201

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                      +         +       H         R         +         E
Sbjct: 202 GAQGQATDIAIQAKEILKMRDRLNKIYQKHT--------RQPIDKIEQCMERDLFMDPEE 253

Query: 218 AKKVGLIDVV 227
           A+  GLID V
Sbjct: 254 ARDWGLIDEV 263


>gi|195645066|gb|ACG42001.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
          Length = 302

 Score = 43.8 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++    + + ++SPGG   AG AI+  +Q ++   
Sbjct: 103 IVCIHGPIADDTASLVVAQLLFLESENPLKPVHLYINSPGGVVTAGLAIYDTMQYIR--- 159

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                             C    +   + + +GS+ +    P  +  L    V I     
Sbjct: 160 ------------------CPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVMIHQPSG 201

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                      +         +       H         R         +         E
Sbjct: 202 GAQGQATDIAIQAKEILKMRDRLNKIYQKHT--------RQPIDKIEQCMERDLFMDPEE 253

Query: 218 AKKVGLIDVV 227
           A+  GLID V
Sbjct: 254 ARDWGLIDEV 263


>gi|226491764|ref|NP_001150643.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
 gi|195640820|gb|ACG39878.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
          Length = 302

 Score = 43.8 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++    + + ++SPGG   AG AI+  +Q ++   
Sbjct: 103 IVCIHGPIADDTASLVVAQLLFLESENPLKPVHLYINSPGGVVTAGLAIYDTMQYIR--- 159

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                             C    +   + + +GS+ +    P  +  L    V I     
Sbjct: 160 ------------------CPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVMIHQPSG 201

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                      +         +       H         R         +         E
Sbjct: 202 GAQGQATDIAIQAKEILKMRDRLNKIYQKHT--------RQPIDKIEQCMERDLFMDPEE 253

Query: 218 AKKVGLIDVV 227
           A+  GLID V
Sbjct: 254 ARDWGLIDEV 263


>gi|254361891|ref|ZP_04978025.1| S14 family bacteriophage protease [Mannheimia haemolytica PHL213]
 gi|153093430|gb|EDN74421.1| S14 family bacteriophage protease [Mannheimia haemolytica PHL213]
          Length = 653

 Score = 43.8 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 69/203 (33%), Gaps = 37/203 (18%)

Query: 30  HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           +++  +   A I+I  +I      +Q+  + ++ +    +   + + + SPGG  + G A
Sbjct: 6   NIQAKANDTAEISIFDEIGFWGVTAQQFAKDLKALGN--NLKQINLHIHSPGGDVFDGIA 63

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I+  ++     K     +  +AAS   +I+ A + I+  E +++                
Sbjct: 64  IYNLLKNHPANKT--VYIDGLAASMASVIAMAGDEIIMPENAMMMIH------------- 108

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
                    ++                   +    +        +  V+++     D   
Sbjct: 109 -----KPWGIQGGDA-----------DDMRKYADLLDKVESTLIMAYVAKTGKYETDLAE 152

Query: 206 VLSDGRIWTGAEAKKVGLIDVVG 228
           +L +    TG E  + G  D + 
Sbjct: 153 MLKEETWLTGKECVEQGFADKLA 175


>gi|219849052|ref|YP_002463485.1| Endopeptidase Clp [Chloroflexus aggregans DSM 9485]
 gi|219543311|gb|ACL25049.1| Endopeptidase Clp [Chloroflexus aggregans DSM 9485]
          Length = 221

 Score = 43.8 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 70/200 (35%), Gaps = 34/200 (17%)

Query: 40  RIAIRGQIEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           RI I G   D Q    ++ ++  +  +D    + + ++SPGGS  AG  I+  +  ++  
Sbjct: 52  RIVILGTPIDDQIANLIVAQLLFLESEDPDRDIWLYINSPGGSVTAGLGIYDTMHHIRPD 111

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
              +      + +   L   A     +   S                       +I    
Sbjct: 112 VATVCVGMAGSMATPILAGGAKGKRYSLPHS-----------------------TIHMHP 148

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215
           +       +P  E+  +        +         L+++    P ++     D  ++ T 
Sbjct: 149 AGGGARGYAPDVEIMARE-------LLRLQQLVRELLAKDTGQPIERIAKDFDRDLFMTP 201

Query: 216 AEAKKVGLIDVVGGQEEVWQ 235
            +AK+ G+ID +  +E+V +
Sbjct: 202 EQAKEYGIIDEILIREDVKK 221


>gi|153209414|ref|ZP_01947390.1| nfeD family protein [Coxiella burnetii 'MSU Goat Q177']
 gi|165919416|ref|ZP_02219482.1| nfeD family protein [Coxiella burnetii RSA 334]
 gi|212219206|ref|YP_002305993.1| non-proteolytic membrane spanning protein, peptidase family S49
           [Coxiella burnetii CbuK_Q154]
 gi|120575351|gb|EAX31975.1| nfeD family protein [Coxiella burnetii 'MSU Goat Q177']
 gi|165916932|gb|EDR35536.1| nfeD family protein [Coxiella burnetii RSA 334]
 gi|212013468|gb|ACJ20848.1| non-proteolytic membrane spanning protein, peptidase family S49
           [Coxiella burnetii CbuK_Q154]
          Length = 458

 Score = 43.8 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 74/232 (31%), Gaps = 23/232 (9%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVAR-IAIRGQI--EDSQELIERIERIS 61
            K+I  R   + ++T  ++  +     ++N+  +A  I I+G I    +      +++ +
Sbjct: 4   RKRIFIRCFYILMLTFGLLGIASHIIAQNNTRRLAILIDIKGGIGPATADFFHRSLKQAT 63

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
               A  +I+ L +PGG A A   I + I                 +    +   A +  
Sbjct: 64  E-KKAQVIILQLDTPGGLATAMRDIIKDILA---------------SPIPVIGYVAPSGA 107

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS---PMKAEPSPFSEVNPKAVQMM 178
            AA                    L                    E    ++  P      
Sbjct: 108 HAASAGTYILYATHIAAMAPGTNLGAATPIAIGTPGGSSPEKGNEKKEGAKKAPAQKTAA 167

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229
           +    S    ++R +++ R    +     + +    +  EA K+ +I+++  
Sbjct: 168 EKKAISDARAYIRSLAQLRGRNVEWAESAVVEAESLSAEEAYKIKVINIIAS 219


>gi|111223668|ref|YP_714462.1| ATP-dependent Clp protease proteolytic subunit [Frankia alni
           ACN14a]
 gi|111151200|emb|CAJ62911.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Frankia alni ACN14a]
          Length = 221

 Score = 43.8 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 31/185 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +  +D    + + ++SPGGS  +  AI+  +Q V+     I      +
Sbjct: 55  VSANDVMAQLLFLESEDPDRDISIYINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAAS 114

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L +       A E S +       Q       L+     I  V            
Sbjct: 115 AAAVLLAAGTPGKRFALENSRILIHQPSAQGEGQSSDLEIQAREILRV------------ 162

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226
                                   L++        +        +I++ AEAK+ GL+D 
Sbjct: 163 ------------------RALQETLLARHTGRSETEIRRDTERDKIFSAAEAKEYGLVDD 204

Query: 227 VGGQE 231
           V    
Sbjct: 205 VITSR 209


>gi|108935917|sp|Q2J9A9|CLPP3_FRASC RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
          Length = 213

 Score = 43.8 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 64/194 (32%), Gaps = 29/194 (14%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +  +D    + + ++SPGGS  +  AI+  +Q V+     I      +
Sbjct: 48  VSANDVMAQLLFLESEDPDRDISIYINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAAS 107

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L +       A E S +       Q                              
Sbjct: 108 AAAVLLAAGTPGKRFALENSRILIHQPSAQGEGQS------------------------- 142

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
              +   +Q  + +   +    +      R    +        +I++  EA++ GLID V
Sbjct: 143 ---SDIEIQAREILRVRALQETMLARHTGRTET-EIRRDTERDKIFSADEAEEYGLIDEV 198

Query: 228 GGQEEVWQSLYALG 241
               +  + L A  
Sbjct: 199 IMSRKAARLLSARS 212


>gi|313894919|ref|ZP_07828479.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976600|gb|EFR42055.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 205

 Score = 43.8 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+DS    ++ ++  +  +D    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 30  IIFLGGPIDDSVANVVVAQMLFLESEDPDKDIHLYINSPGGVVTAGLAIYDTMQYIKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + +     L                      
Sbjct: 90  STICIGQAASMGSILLTAGAKGKRYALPHARIMIHQPLGGAQGQST-------------- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            +Q+    +         +++       DK           +  
Sbjct: 136 ----------------DIQIQAKEILRLREVGNEILARHTGQDTDKINVDTERDNFMSAE 179

Query: 217 EAKKVGLIDVV 227
           EAK  GLID V
Sbjct: 180 EAKAYGLIDEV 190


>gi|291548434|emb|CBL21542.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus
           sp. SR1/5]
          Length = 193

 Score = 43.8 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 58/176 (32%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D +  + + ++SPGGS  AG AI+  +Q +K     I      +  A  
Sbjct: 44  IVAQLLFLEAEDPSKDIQLYINSPGGSVTAGMAIYDTMQYIKCDVSTICLGMAASMGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L S A     A   S +            +    ++ +    +  +  K           
Sbjct: 104 LSSGAKGKRYALPNSTIMIHQPSG---GAQGQATEIQIVADQIAKTKKKLNEIL------ 154

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                                S +   P +     +D   + T  EAK  GLID V
Sbjct: 155 ---------------------SANTGQPLEIVEKDTDRDNYMTAEEAKAYGLIDGV 189


>gi|15639498|ref|NP_218948.1| ATP-dependent Clp protease proteolytic subunit [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025737|ref|YP_001933509.1| ATP-dependent Clp protease proteolytic subunit [Treponema pallidum
           subsp. pallidum SS14]
 gi|6225161|sp|O83520|CLPP1_TREPA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|3322799|gb|AAC65495.1| ATP-dependent Clp protease proteolytic component (clpP-1)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018312|gb|ACD70930.1| ATP-dependent Clp protease proteolytic component [Treponema
           pallidum subsp. pallidum SS14]
 gi|291059884|gb|ADD72619.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
           pallidum subsp. pallidum str. Chicago]
          Length = 203

 Score = 43.8 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 53/167 (31%), Gaps = 7/167 (4%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D+    ++ ++  +   +    + + ++SPGG+  AG A++  +Q +    
Sbjct: 34  IIFVDGEITDAVADLVVAQLLFLESQNPDKDISLYINSPGGAVTAGLAVYDTMQHICPEV 93

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK-----PFLDKLGVSI 152
             I      + +A  L   A     A  +S V                     + L +  
Sbjct: 94  QTICLGQASSMAAVLLAGGAPGKRFALPSSRVMIHQPWGGVQGQASDVCIQAQEILRLKT 153

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            ++    +    S                  +  +  V  V + R  
Sbjct: 154 LTIAYFALHTGQSEEQVREDMERDFFLSAEQACSYGIVDTVMKRRKH 200


>gi|260776236|ref|ZP_05885131.1| nfed family protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607459|gb|EEX33724.1| nfed family protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 459

 Score = 43.8 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 80/245 (32%), Gaps = 20/245 (8%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISR 62
           +K+I    +   L   + V              V  I ++G I    S  +   IE+  +
Sbjct: 1   MKRISIFIISWLLAISSAVA-----------NEVWIIPLKGAIGPATSDYVSREIEQAHQ 49

Query: 63  DDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
             +   +++ + +PGG  +   + I             +      AASAG  I  AS+I 
Sbjct: 50  TGTVKLILLKMDTPGGLDSAMRDMIRSITTSHIPVATWVGPSGARAASAGTYILFASHIA 109

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
             AE + +G+   +       P          +  S     + S          + + + 
Sbjct: 110 AMAEATNLGAATPVSLGGGAPPSTTPANEDDSTQGSDESAPQNSEKVPAKTAMEKKVIND 169

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
             +      RL    RN  + +   +S+       EA ++ +ID +    E    L    
Sbjct: 170 AKAYIKGLARL--HGRNAEWAE-KAVSEAASLDAMEAFELNVIDFIASSPE---QLIEKA 223

Query: 242 VDQSI 246
             + +
Sbjct: 224 NGREV 228


>gi|119473285|ref|ZP_01614937.1| ATP-dependent Clp protease proteolytic subunit [Alteromonadales
           bacterium TW-7]
 gi|119444508|gb|EAW25828.1| ATP-dependent Clp protease proteolytic subunit [Alteromonadales
           bacterium TW-7]
          Length = 173

 Score = 43.8 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED+    ++ ++  +  ++    + + ++SPGGS  AG AI+  +  +K   
Sbjct: 6   IIFLTGQVEDNMANLILAQMLFLESENPDKDIFLYINSPGGSVTAGMAIYDTMNFIKPDV 65

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +       +     I S+  
Sbjct: 66  STICVGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQASDFEIHAKEILSI-- 123

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            RL++E    P D            + +
Sbjct: 124 ----------------------------KDKLNRLMAEHTGQPLDVISKDTDRDNFMSAS 155

Query: 217 EAKKVGLIDVV 227
           EA + GL+D V
Sbjct: 156 EAVEYGLVDSV 166


>gi|16331162|ref|NP_441890.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
           PCC 6803]
 gi|3023511|sp|P74467|CLPP3_SYNY3 RecName: Full=Probable ATP-dependent Clp protease proteolytic
           subunit 3; AltName: Full=Endopeptidase Clp 3
 gi|1653656|dbj|BAA18568.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
           PCC 6803]
          Length = 202

 Score = 43.8 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 32/187 (17%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            +   I +   ++  +  +  DD +  + + ++SPGGS  AG AI+  +Q +K     I 
Sbjct: 38  EVNDSIAN--RIVAFLLYLDSDDPSKPIYLYINSPGGSVTAGMAIYDTMQYIKAEVITIC 95

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                +  A  L S A    +A   + +     +      +     +             
Sbjct: 96  VGLAASMGAFLLASGAPGKRLALPHARIMIHQPMGGTGRRQATDIDIEAR---------- 145

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220
                               +         ++++      +K    +D   + + AEAK+
Sbjct: 146 -------------------EILRIRQQLNEIMAQRTGQTVEKIAKDTDRDYFLSAAEAKE 186

Query: 221 VGLIDVV 227
            GLID V
Sbjct: 187 YGLIDKV 193


>gi|332653082|ref|ZP_08418827.1| Clp protease [Ruminococcaceae bacterium D16]
 gi|332518228|gb|EGJ47831.1| Clp protease [Ruminococcaceae bacterium D16]
          Length = 236

 Score = 43.8 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 81/239 (33%), Gaps = 47/239 (19%)

Query: 27  WSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLS 74
            SS ++ +   V  + I GQ+E              + ++  +  +   ++   L+V L+
Sbjct: 25  GSSIIQTSKGTVHVLTIVGQVEGHQVLPPSSKSTKYEHVMPLLAMVEESEAIDGLLVLLN 84

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           + GG   AG  I   I      KP ++ V     S G  ++ ++     A ++ +    V
Sbjct: 85  TVGGDVEAGLGIAELIA--GMSKPTVSLVLGGGHSIGVPLAVSAKRSFIAPSAAMTIHPV 142

Query: 135 LFQ-----YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
                    P    + +++   I    ++  K +   F+E+                   
Sbjct: 143 RLNGLVIGVPQTFYYFERVQERITQFVTANSKIKRETFTEL------------------- 183

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                               G +  G EA ++GLID +GG       L+ +  ++   +
Sbjct: 184 ----MLKTGELAADV-----GSVIYGQEAVELGLIDEIGGLSSALDCLHGMIRERRAAE 233


>gi|126207994|ref|YP_001053219.1| putative Clp-like protease [Actinobacillus pleuropneumoniae L20]
 gi|190149760|ref|YP_001968285.1| Clp-like protease [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|126096786|gb|ABN73614.1| putative Clp-like protease [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|189914891|gb|ACE61143.1| putative Clp-like protease [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
          Length = 674

 Score = 43.8 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 67/203 (33%), Gaps = 37/203 (18%)

Query: 30  HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
            ++  +   A I+I  +I      +Q+    ++ +    +   + + + SPGG  + G A
Sbjct: 27  TIKAAANDTAEISIYDEIGFWGVTAQQFANDLKALGN--NLKQINLHIHSPGGDVFDGIA 84

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I+  ++     K     +  +AAS   +I+ A N I+  E +++                
Sbjct: 85  IYNLLKNHPANKT--VYIDGLAASMASVIAMAGNEIIMPENAMMMIH------------- 129

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
                    ++                   +    +        +  V+++     +   
Sbjct: 130 -----KPWGIQGGDA-----------DDMRKYADLLDKVESTLIMAYVAKTEKSEEELAE 173

Query: 206 VLSDGRIWTGAEAKKVGLIDVVG 228
           +L +    TG E  + G  D + 
Sbjct: 174 MLKEETWLTGKECVEQGFADKLA 196


>gi|293189653|ref|ZP_06608370.1| Clp protease [Actinomyces odontolyticus F0309]
 gi|315604695|ref|ZP_07879758.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|292821391|gb|EFF80333.1| Clp protease [Actinomyces odontolyticus F0309]
 gi|315313707|gb|EFU61761.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 214

 Score = 43.8 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 68/188 (36%), Gaps = 30/188 (15%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D  + + + ++SPGGS  A  AI+  +Q +K +   +      +
Sbjct: 56  ASADDVMAQLLVLESQDPDSLITMYINSPGGSFTALTAIYDTMQYIKPQIQTVCLGQAAS 115

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L + +    +A   + V       +    +                         
Sbjct: 116 AAAVLLAAGSPGKRLALPNARVLIHQPAMEGMQGQA------------------------ 151

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226
                  +Q++ D +D    W    +S+    P ++    +   +I T  +A + GLID 
Sbjct: 152 -----SDIQIVADEIDRMRAWLEDTISKHSGKPVEQVRRDIERDKILTAPQAAEYGLIDQ 206

Query: 227 VGGQEEVW 234
           V    +  
Sbjct: 207 VLESRKAL 214


>gi|3318853|pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318854|pdb|1TYF|B Chain B, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318855|pdb|1TYF|C Chain C, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318856|pdb|1TYF|D Chain D, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318857|pdb|1TYF|E Chain E, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318858|pdb|1TYF|F Chain F, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318859|pdb|1TYF|G Chain G, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318860|pdb|1TYF|H Chain H, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318861|pdb|1TYF|I Chain I, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318862|pdb|1TYF|J Chain J, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318863|pdb|1TYF|K Chain K, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318864|pdb|1TYF|L Chain L, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318865|pdb|1TYF|M Chain M, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318866|pdb|1TYF|N Chain N, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|93278456|pdb|1YG6|A Chain A, Clpp
 gi|93278457|pdb|1YG6|B Chain B, Clpp
 gi|93278458|pdb|1YG6|C Chain C, Clpp
 gi|93278459|pdb|1YG6|D Chain D, Clpp
 gi|93278460|pdb|1YG6|E Chain E, Clpp
 gi|93278461|pdb|1YG6|F Chain F, Clpp
 gi|93278462|pdb|1YG6|G Chain G, Clpp
 gi|93278463|pdb|1YG6|H Chain H, Clpp
 gi|93278464|pdb|1YG6|I Chain I, Clpp
 gi|93278465|pdb|1YG6|J Chain J, Clpp
 gi|93278466|pdb|1YG6|K Chain K, Clpp
 gi|93278467|pdb|1YG6|L Chain L, Clpp
 gi|93278468|pdb|1YG6|M Chain M, Clpp
 gi|93278469|pdb|1YG6|N Chain N, Clpp
 gi|109157730|pdb|2FZS|A Chain A, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157731|pdb|2FZS|B Chain B, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157732|pdb|2FZS|C Chain C, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157733|pdb|2FZS|D Chain D, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157734|pdb|2FZS|E Chain E, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157735|pdb|2FZS|F Chain F, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157736|pdb|2FZS|G Chain G, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157737|pdb|2FZS|H Chain H, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157738|pdb|2FZS|I Chain I, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157739|pdb|2FZS|J Chain J, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157740|pdb|2FZS|K Chain K, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157741|pdb|2FZS|L Chain L, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157742|pdb|2FZS|M Chain M, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157743|pdb|2FZS|N Chain N, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
          Length = 193

 Score = 43.8 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 28  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 88  STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 142 ------------------------ILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAP 177

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 178 EAVEYGLVDSILT 190


>gi|237800698|ref|ZP_04589159.1| putative inner membrane peptidase [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023557|gb|EGI03614.1| putative inner membrane peptidase [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 218

 Score = 43.8 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 8/142 (5%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGG 78
                    +    V  +   G I+ S     +  I  +  ++ D     +++ L S GG
Sbjct: 79  ALKKEKKQAETKARVYVLDFDGDIKASATESMRHEITALLTLATDKD--EVVLRLESGGG 136

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
             ++       + +++     +T    ++AAS GY+++C  N I++A  +++GSIGV+ Q
Sbjct: 137 MVHSYGLASSQLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQ 196

Query: 138 YPYVKPFLDKLGVSIKSVKSSP 159
            P V   L K  +  + + +  
Sbjct: 197 LPNVNRLLKKHDIDFEVLTAGE 218


>gi|93278470|pdb|1YG8|A Chain A, The Structure Of A V6a Variant Of Clpp.
 gi|93278471|pdb|1YG8|B Chain B, The Structure Of A V6a Variant Of Clpp.
 gi|93278472|pdb|1YG8|C Chain C, The Structure Of A V6a Variant Of Clpp.
 gi|93278473|pdb|1YG8|D Chain D, The Structure Of A V6a Variant Of Clpp.
 gi|93278474|pdb|1YG8|E Chain E, The Structure Of A V6a Variant Of Clpp.
 gi|93278475|pdb|1YG8|F Chain F, The Structure Of A V6a Variant Of Clpp.
 gi|93278476|pdb|1YG8|G Chain G, The Structure Of A V6a Variant Of Clpp.
 gi|93278477|pdb|1YG8|H Chain H, The Structure Of A V6a Variant Of Clpp.
 gi|93278478|pdb|1YG8|I Chain I, The Structure Of A V6a Variant Of Clpp.
 gi|93278479|pdb|1YG8|J Chain J, The Structure Of A V6a Variant Of Clpp.
 gi|93278480|pdb|1YG8|K Chain K, The Structure Of A V6a Variant Of Clpp.
 gi|93278481|pdb|1YG8|L Chain L, The Structure Of A V6a Variant Of Clpp.
 gi|93278482|pdb|1YG8|M Chain M, The Structure Of A V6a Variant Of Clpp.
 gi|93278483|pdb|1YG8|N Chain N, The Structure Of A V6a Variant Of Clpp.
 gi|93278484|pdb|1YG8|O Chain O, The Structure Of A V6a Variant Of Clpp.
 gi|93278485|pdb|1YG8|P Chain P, The Structure Of A V6a Variant Of Clpp.
 gi|93278486|pdb|1YG8|Q Chain Q, The Structure Of A V6a Variant Of Clpp.
 gi|93278487|pdb|1YG8|R Chain R, The Structure Of A V6a Variant Of Clpp.
 gi|93278488|pdb|1YG8|S Chain S, The Structure Of A V6a Variant Of Clpp.
 gi|93278489|pdb|1YG8|T Chain T, The Structure Of A V6a Variant Of Clpp.
 gi|93278490|pdb|1YG8|U Chain U, The Structure Of A V6a Variant Of Clpp.
 gi|93278491|pdb|1YG8|V Chain V, The Structure Of A V6a Variant Of Clpp.
 gi|93278492|pdb|1YG8|W Chain W, The Structure Of A V6a Variant Of Clpp.
 gi|93278493|pdb|1YG8|X Chain X, The Structure Of A V6a Variant Of Clpp.
 gi|93278494|pdb|1YG8|Y Chain Y, The Structure Of A V6a Variant Of Clpp.
 gi|93278495|pdb|1YG8|Z Chain Z, The Structure Of A V6a Variant Of Clpp.
 gi|93278496|pdb|1YG8|AA Chain a, The Structure Of A V6a Variant Of Clpp.
 gi|93278497|pdb|1YG8|BB Chain b, The Structure Of A V6a Variant Of Clpp
          Length = 193

 Score = 43.8 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 28  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 88  STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 142 ------------------------ILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAP 177

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 178 EAVEYGLVDSILT 190


>gi|282883083|ref|ZP_06291683.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
           lacrimalis 315-B]
 gi|300813694|ref|ZP_07094016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|281297060|gb|EFA89556.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
           lacrimalis 315-B]
 gi|300512236|gb|EFK39414.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 194

 Score = 43.8 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I   G++ D  +  ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IIFASGEVNDTMADLIVAQLLFLESEDPNKDIQLYINSPGGSVSAGLAIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S A     A   S +           +                
Sbjct: 89  STICIGMAASMGAILLSSGAKGKRFALPNSDIMIHQPSGGTQGM---------------- 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
                            +Q+  + +  +     ++++++     +K    +D   W    
Sbjct: 133 --------------ATDIQITAEKILKTRKSLNQILAKNTGQKLEKIERDADRDFWLDAN 178

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 179 EAKEYGLIDKV 189


>gi|168204793|ref|ZP_02630798.1| phage protein [Clostridium perfringens E str. JGS1987]
 gi|170663602|gb|EDT16285.1| phage protein [Clostridium perfringens E str. JGS1987]
          Length = 672

 Score = 43.8 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 70/210 (33%), Gaps = 54/210 (25%)

Query: 39  ARIAIRGQIEDSQ----------------ELIERIERISRDDSATALIVSLSSPGGSAYA 82
           A I I+G I D                  ++I +I+      +   L + ++SPGG  +A
Sbjct: 2   AEIEIKGDIVDDDWGRWYEWLGYSYTSPSKVINQIKAA----NGEKLTIKINSPGGDIFA 57

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
              I+  +++            E+      + + A+++I  A  S +     L       
Sbjct: 58  ASDIYTELRE---------YKGEIEIKITGMAASAASVIAMAGKSSMSPTAQLM------ 102

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
                    + +V +                      +V+ ++             +  +
Sbjct: 103 ---------VHNVSTGTWGDYRDME---------HTAEVLKNANDTIANAYMCKTGMSRE 144

Query: 203 KTLVLSDGRIW-TGAEAKKVGLIDVVGGQE 231
           + L L +   + +  +AK++G ID +  +E
Sbjct: 145 EALELMNNETYLSATKAKELGFIDEIMFEE 174


>gi|119717699|ref|YP_924664.1| ClpP1 peptidase. Serine peptidase. MEROPS family S14 [Nocardioides
           sp. JS614]
 gi|119538360|gb|ABL82977.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nocardioides
           sp. JS614]
          Length = 195

 Score = 43.8 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 66/204 (32%), Gaps = 37/204 (18%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
           ++  +  ++  +S +D    + + ++SPGGS  AG AI+  +  + N    +     +AA
Sbjct: 28  NANAICAQLLLLSAEDPEADIFLHINSPGGSVDAGMAIYDTMNYIPNDVATVG--MGLAA 85

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
           S G  + CA                           +                       
Sbjct: 86  SMGQFLLCAGTKGKR-----YALPHARIMMHQPSSGMGG--------------------- 119

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227
             +   +++            + L++E      ++        R +T  +AK+ GL+D  
Sbjct: 120 --SASDIKIQAQQSLHIKKVLLELIAEHTGQTVEQIEMDADRDRWFTADQAKEYGLVD-- 175

Query: 228 GGQEEVWQSLYALGVDQSIRKIKD 251
               +V +S      D    + KD
Sbjct: 176 ----QVIKSAREAADDGRPARQKD 195


>gi|46241439|gb|AAS82919.1| capsid protein [Wolbachia phage WO]
          Length = 141

 Score = 43.8 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   +  ++++ +Q  VD  Y  F++L++ +R +  +K      G  + G +A ++GL D
Sbjct: 1   PHEPMTSESLESLQKEVDRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59

Query: 226 VVGGQEEVWQS 236
            V    E    
Sbjct: 60  GVTTFFEFINK 70


>gi|88860444|ref|ZP_01135082.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas
           tunicata D2]
 gi|88817642|gb|EAR27459.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas
           tunicata D2]
          Length = 205

 Score = 43.8 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 65/197 (32%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG AI+  +  +K   
Sbjct: 38  VIFLTGQVEDHMANLIVAQLLFLESENPEKDIFIYINSPGGSVTAGMAIYDTMNFIKPNV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L             S V     L  +       +     I S+  
Sbjct: 98  STVCMGQAASMGAFLLSGGTKGKRFCLPNSRVMIHQPLGGFQGQASDFEIHAREILSI-- 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            RL++E    P +            +GA
Sbjct: 156 ----------------------------KDKLNRLLAEHTGQPIEVISRDTDRDNFMSGA 187

Query: 217 EAKKVGLIDVVGGQEEV 233
           +A + G++D V  Q ++
Sbjct: 188 QAVEYGIVDAVLTQRDL 204


>gi|217958120|ref|YP_002336664.1| Clp protease [Bacillus cereus AH187]
 gi|217064485|gb|ACJ78735.1| Clp protease [Bacillus cereus AH187]
 gi|282765831|gb|ADA84954.1| Clp protease [Bacillus phage 11143]
          Length = 248

 Score = 43.8 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 76/214 (35%), Gaps = 33/214 (15%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGS 79
           ++        E    +  ++ + G I    S+   E + R  +D  A  + V ++S GGS
Sbjct: 10  LLNLKRDIRFEAKGENEYKLTVYGSIGGWFSENNAEAVRRKIQDVKAEKIHVHINSGGGS 69

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
           A+ G AI   +++      +I  +   AASA  +I+ A + I+    +++          
Sbjct: 70  AFDGVAICNQLKQHNAE--IIVHIDGWAASAASVIAMAGDKIIMPSNTMMMIHQASTFEY 127

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                 +K    ++ + S+   +    F   + +  Q+                      
Sbjct: 128 GNADLFEKTARDLRKIDSALAASYKKRFVGTDEELKQL---------------------- 165

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
                  L D    T  EA  +GL D +  + E+
Sbjct: 166 -------LKDETWLTAEEAVALGLADEIADEIEI 192


>gi|46241429|gb|AAS82914.1| capsid protein [Wolbachia phage WO]
 gi|46241447|gb|AAS82923.1| capsid protein [Wolbachia phage WO]
          Length = 141

 Score = 43.8 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   +  ++++ +Q  VD  Y  FV+L++ +R +  +K      G  + G +A ++GL D
Sbjct: 1   PHEPMTSESLESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59

Query: 226 VVGGQEEVWQS 236
            V    E    
Sbjct: 60  GVTTFFEFINK 70


>gi|257870013|ref|ZP_05649666.1| peptidase S14 [Enterococcus gallinarum EG2]
 gi|257804177|gb|EEV32999.1| peptidase S14 [Enterococcus gallinarum EG2]
          Length = 196

 Score = 43.8 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 63/197 (31%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ D     +I ++  +   DS   + + ++SPGGS  AG AIF  +  +K   
Sbjct: 29  IIMLSGQVTDDLANSIIAQLLFLDAQDSEKDIYLYINSPGGSVTAGLAIFDTMNFIKADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +       A   + +     L         ++           
Sbjct: 89  QTIVMGMAASMGSFLLTAGEKGKRFALPNAEIMIHQPLGGAQGQATEIEIAAR------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +  +     +++SE    P +     +D   + T  
Sbjct: 142 -----------------------HILQTRERLNKILSERTGQPIEVIEKDTDRDNFMTAQ 178

Query: 217 EAKKVGLIDVVGGQEEV 233
           EAK  GLID +     +
Sbjct: 179 EAKDYGLIDEIMESNSL 195


>gi|237742125|ref|ZP_04572606.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           4_1_13]
 gi|229429773|gb|EEO39985.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           4_1_13]
          Length = 367

 Score = 43.8 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 78/235 (33%), Gaps = 47/235 (20%)

Query: 30  HVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGS 79
            +++ S +   I I G I            S    + +E      + + + + ++SPGG 
Sbjct: 11  EIKNLSENTVEIRIYGTITKWADKEYGQVSSASFAKELE---NYKNVSQINLRINSPGGD 67

Query: 80  AYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
            +    I+  ++     N   +   +  +AASA   +   ++ +V    +L      L  
Sbjct: 68  VFEASTIYNLLKDFAKVNNIQITGYIDGLAASAASFLVLCASKVVMGIGALFMIHNPLTY 127

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
                  L K    + +VK S +    +                             +S+
Sbjct: 128 AYGNTAELQKQIQLLDTVKESILDIYCT-----------------------------KSK 158

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
               +    +++ + +   EA + G +D +   +    SL  +    +   I+++
Sbjct: 159 LNREEIAEKMNNEKWFRANEALEAGFVDEIVEND---NSLENIKNISNELHIENY 210


>gi|326795825|ref|YP_004313645.1| ATP-dependent Clp protease proteolytic subunit [Marinomonas
           mediterranea MMB-1]
 gi|326546589|gb|ADZ91809.1| ATP-dependent Clp protease proteolytic subunit [Marinomonas
           mediterranea MMB-1]
          Length = 210

 Score = 43.8 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 44  VIFLVGQVEDHMANLVVAQLLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 103

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A+        S V     L  Y      ++     I S+K 
Sbjct: 104 STMCIGQAASMGALLLTAGAAGKRYCLPNSRVMIHQPLGGYQGQASDIEIHTREILSIKH 163

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                             +++     P +K              
Sbjct: 164 ------------------------------RLNEIIAHHTGQPIEKVAEDTDRDNFMNPE 193

Query: 217 EAKKVGLIDVV 227
            AK+ GLID +
Sbjct: 194 SAKEYGLIDDI 204


>gi|89900933|ref|YP_523404.1| hypothetical protein Rfer_2149 [Rhodoferax ferrireducens T118]
 gi|89345670|gb|ABD69873.1| protein of unknown function DUF107 [Rhodoferax ferrireducens T118]
          Length = 488

 Score = 43.8 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 71/196 (36%), Gaps = 7/196 (3%)

Query: 38  VARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK--V 93
           V  + + G I    +  +   + + + ++ A  +++ + +PGG   +   I + I    V
Sbjct: 37  VPLLTVNGPIGPATADYIARGLHKAA-NEHAPLVVLQIDTPGGLDSSTRQIVKDILASVV 95

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
                V       A++  Y++  +   ++A  T+L  +  V        P   +   +  
Sbjct: 96  PVAAWVAPGGARAASAGAYIVYASHVAVMAPGTNLGAATPVQMGGLPGAPQQPQPTPANP 155

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRI 212
           +               V P A  M + +V  S  +   L ++ R    +     + DG  
Sbjct: 156 AAPQGKASEPKDATDTVRPAADAMTRKIVHDSAAYLRSL-AQMRGRNVEWADSAVRDGVS 214

Query: 213 WTGAEAKKVGLIDVVG 228
            +  EA+   +ID + 
Sbjct: 215 LSAEEAQNQRVIDFIA 230


>gi|319788749|ref|YP_004090064.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus
           albus 7]
 gi|315450616|gb|ADU24178.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus
           albus 7]
          Length = 196

 Score = 43.8 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 54/178 (30%), Gaps = 28/178 (15%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +I ++  +   D    + + ++SPGGS  AG AI+  IQ ++     I      +  A  
Sbjct: 44  VISQLLYLESQDPEKDIDLYINSPGGSVTAGMAIYDTIQYIRCDVNTICIGMAASMGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L S       +   S +     L     +      + +    + ++  K           
Sbjct: 104 LSSGTKGKRFSLPNSEIMIHQPLIGGGGISGQCTDVKIHSDHLVATREKLNRIL------ 157

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229
                                +E+     ++           T  EA + GLID V  
Sbjct: 158 ---------------------AENSGKSIEQIAIDTERDNYLTAQEAMEYGLIDKVIT 194


>gi|183601399|ref|ZP_02962769.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683456|ref|YP_002469839.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241191101|ref|YP_002968495.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196507|ref|YP_002970062.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|63055004|gb|AAY29040.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium animalis subsp. animalis ATCC 25527]
 gi|183219005|gb|EDT89646.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219621106|gb|ACL29263.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249493|gb|ACS46433.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240251061|gb|ACS48000.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|289178845|gb|ADC86091.1| ClpP [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794090|gb|ADG33625.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 233

 Score = 43.8 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 59/181 (32%), Gaps = 30/181 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    +++ ++SPGGS  A  AI+  +Q +K     +      +
Sbjct: 77  TSADDIMAQLLVLESMDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 136

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L +      +    + V          + K    ++                   
Sbjct: 137 AAAIILAAGTKGKRLMLPNARVLIHQPAIDQGFGKATDIEIQAK---------------- 180

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226
                         +     W    +++      ++    +      T +EAK+ G++D 
Sbjct: 181 -------------EMMRMREWLENTLAKHTGQSRERISRDIEVDTFLTASEAKEYGIVDE 227

Query: 227 V 227
           V
Sbjct: 228 V 228


>gi|329770311|ref|ZP_08261696.1| ATP-dependent Clp protease proteolytic subunit [Gemella sanguinis
           M325]
 gi|328836764|gb|EGF86416.1| ATP-dependent Clp protease proteolytic subunit [Gemella sanguinis
           M325]
          Length = 215

 Score = 43.8 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 52/183 (28%), Gaps = 31/183 (16%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  +  ++  +   DS   +   ++SPGGS  AG AI+  +Q +K     I      +  
Sbjct: 41  ANSITSQLLFLEAQDSEKDIYFYINSPGGSVTAGFAIYDTMQHIKCDVVTICMGMAASMG 100

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L +       A   + V     L         ++                       
Sbjct: 101 AFLLAAGTIGKRYALPNAEVMIHQPLGGAQGQATEIEIAAK------------------- 141

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVG 228
                       +  +     +++++                   +  EA + GL+D V 
Sbjct: 142 -----------HILRTREKLNKILADRTGQTIKAIERDTERDNYLSAEEACEYGLVDKVM 190

Query: 229 GQE 231
             E
Sbjct: 191 YPE 193


>gi|288918290|ref|ZP_06412644.1| Enoyl-CoA hydratase/isomerase [Frankia sp. EUN1f]
 gi|288350327|gb|EFC84550.1| Enoyl-CoA hydratase/isomerase [Frankia sp. EUN1f]
          Length = 324

 Score = 43.8 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 74/273 (27%), Gaps = 20/273 (7%)

Query: 31  VEDNSPHVARIAIRG-------QIEDSQELIERIERISRDDSATALIVSLSSPG-GSAYA 82
            +D    +A I +          I+      + I +   DD    L++  + P  GS   
Sbjct: 17  EKDPDTRIATITLDRADELNAMTIDAQHRYADLIRQAGIDDEVKVLVIRANGPNLGSGAD 76

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV-GSIGVLFQYPYV 141
              +   + +  +            A   Y  +       +        S G+     + 
Sbjct: 77  LPELMDIMARRGDVTMKHIVRIPEDADVEYPRTGTYRYGASNVQFYTDPSAGMRSLQDFK 136

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF-VRLVSESRNIP 200
           K  + ++                   S  +             +   +    +   R   
Sbjct: 137 KISILEVRGYCYGWHFYQAADADIVISAEDALFGHAAFRYAGFAARQWQWCSMMGIRKF- 195

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                ++  GR +T  E      ++ V   +E+        +  +  +  D    +  +F
Sbjct: 196 ---MEMVFTGRPFTAKEMYDCDFVNAVVPFDELEAMTAKYALACARSRPTDTVFVQKTFF 252

Query: 261 CDLK------NLSISSLLEDTIPLMKQTKVQGL 287
              K        SI S L ++   + +   +GL
Sbjct: 253 EIFKQHQGEYMGSILSGLLESTGRLLRPDGEGL 285


>gi|5410518|gb|AAD43090.1| SppA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 135

 Score = 43.8 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 29/112 (25%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51
           + FV + +    ++ L LV + +       S+ E  +     + I G I D         
Sbjct: 19  LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78

Query: 52  --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG 83
                               +++  I +   D + T +++ L +  G+    
Sbjct: 79  ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPS 130


>gi|71279720|ref|YP_268677.1| enoyl-CoA hydratase/isomerase family protein [Colwellia
           psychrerythraea 34H]
 gi|71145460|gb|AAZ25933.1| enoyl-CoA hydratase/isomerase family protein [Colwellia
           psychrerythraea 34H]
          Length = 270

 Score = 43.8 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 71/240 (29%), Gaps = 30/240 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           + L  RI   S +D    ++++     G  ++       ++++  RK             
Sbjct: 39  RALYGRIREASENDDIRVIVITGE---GGVFSAG---HDLKEMSGRKE------------ 80

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
                           +++     L       P      V   +  +            V
Sbjct: 81  -----HCEPDNEKRVKAVLDDCTQLMMSLIKSPKAIIACVQGTASAAGCQ-LVSMCDLAV 134

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS-DGRIWTGAEAKKVGLIDVVGG 229
                +     V+        LV   RN+     + ++  G +++  +A + GL++ V  
Sbjct: 135 TQDQAKFCAPGVNIGTFCTTPLVGIGRNMHRKHAMEIALTGDMFSAEDAMRFGLVNKVVK 194

Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
            E++      L    + +     +  K  ++       I   +ED      Q  +Q + +
Sbjct: 195 IEDLKNETEKLANKIAQKSAVGIHSGKLAFYQQ-----IEESIEDAYTSASQAMLQAMLS 249


>gi|77360986|ref|YP_340561.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas
           haloplanktis TAC125]
 gi|110816463|sp|Q3IF46|CLPP_PSEHT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|76875897|emb|CAI87118.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           (Caseinolytic protease) (Protease Ti)(Heat shock protein
           F21.5) [Pseudoalteromonas haloplanktis TAC125]
          Length = 205

 Score = 43.8 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED+    ++ ++  +  ++    + + ++SPGGS  AG AI+  +  +K   
Sbjct: 38  IIFLTGPVEDNMANLILAQMLFLESENPDKDIFLYINSPGGSVTAGMAIYDTMNFIKPDV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +       +     I S+  
Sbjct: 98  STICVGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQASDFEIHAKEILSI-- 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            RL++E    P D            +  
Sbjct: 156 ----------------------------KDKLNRLMAEHTGQPLDVISKDTDRDNFMSAD 187

Query: 217 EAKKVGLIDVV 227
           +A   G++D V
Sbjct: 188 QAVDYGIVDSV 198


>gi|242309637|ref|ZP_04808792.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           pullorum MIT 98-5489]
 gi|239523638|gb|EEQ63504.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           pullorum MIT 98-5489]
          Length = 196

 Score = 43.8 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 63/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQI+D  +  ++ ++  +  +D    + + ++SPGG   +G +I+  +  +K   
Sbjct: 30  IIMLSGQIDDGIASSIVAQLLFLEAEDPQKDIYLYINSPGGVVTSGLSIYDTMNYIKPDI 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L         +   S +     L         ++           
Sbjct: 90  CTICIGQAASMGAFLLSCGTKGKRYSLPNSRIMIHQPLGGAQGQATDIE----------- 138

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                              +    +         +++ + N   +K    +D   + +  
Sbjct: 139 -------------------IQAKEILRLKATLNEILAANTNQSLEKISKDTDRDFFMSAQ 179

Query: 217 EAKKVGLIDVVGG 229
           EAKK GLID V  
Sbjct: 180 EAKKYGLIDNVLT 192


>gi|322834046|ref|YP_004214073.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rahnella sp.
           Y9602]
 gi|321169247|gb|ADW74946.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rahnella sp.
           Y9602]
          Length = 207

 Score = 43.8 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  +     + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  IIFLTGQVEDHMANLIVAQMLFLEAESPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +      ++           
Sbjct: 102 STICMGQACSMGAFLLTAGAEGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L+++      ++        R  +  
Sbjct: 156 ------------------------ILKVKSRMNELMAKHTGKSLEEIERDTERDRFLSAD 191

Query: 217 EAKKVGLIDVV 227
           EA + GL+D V
Sbjct: 192 EAVQYGLVDSV 202


>gi|34581620|ref|ZP_00143100.1| ATP-dependent clp protease proteolytic subunit [Rickettsia sibirica
           246]
 gi|20137864|sp|Q92HM5|CLPP_RICCN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|28263005|gb|EAA26509.1| ATP-dependent clp protease proteolytic subunit [Rickettsia sibirica
           246]
          Length = 201

 Score = 43.8 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 29/187 (15%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  ++    + + ++SPGG   AG AI+  +Q +K +   +      A S G 
Sbjct: 44  IVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQ--ACSMGS 101

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L+ C     +                             I+      +K +       + 
Sbjct: 102 LLLCGGEKGMR-----YSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSK 156

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
              Q ++ +  S                             +  EAKK GL+D +    +
Sbjct: 157 HTEQELKHIEKSMERDN----------------------FMSPEEAKKFGLVDNIMSSRD 194

Query: 233 VWQSLYA 239
               L  
Sbjct: 195 AMALLAK 201


>gi|283955633|ref|ZP_06373126.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283792858|gb|EFC31634.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 194

 Score = 43.8 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  ++ ++  +  +D    + + ++SPGG   +G +I+  +  +K   
Sbjct: 28  IIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     A   S +     L         ++           
Sbjct: 88  CTICIGQAASMGAFLLSCGAEGKRFALPNSRIMIHQPLGGARGQATDIE----------- 136

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                              +    +         +++++      K    ++   + +  
Sbjct: 137 -------------------IQAKEILRLKTILNDILAKNTKQKVTKIAKDTERDFFMSAQ 177

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 178 EAKEYGLIDKV 188


>gi|159043937|ref|YP_001532731.1| ATP-dependent Clp protease proteolytic subunit [Dinoroseobacter
           shibae DFL 12]
 gi|189082456|sp|A8LJA8|CLPP_DINSH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157911697|gb|ABV93130.1| endopeptidase Clp [Dinoroseobacter shibae DFL 12]
          Length = 208

 Score = 43.8 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 59/190 (31%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G + D     ++ ++  +  ++ +  + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 37  IVFVNGPVHDGMSQLVVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      AAS G L+  A    +                                   
Sbjct: 97  STLVVGQ--AASMGSLLLTAGEKGMR-----FSLPNSRIMVHQPSGGYQG---------- 139

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                +    ++   K    +  +        ++ V             L         +
Sbjct: 140 --QATDIMIHAQETQKLKDRLNQIYVKHTGQPLKKV----------VDALERDNFMDAEQ 187

Query: 218 AKKVGLIDVV 227
           AK+ GLID +
Sbjct: 188 AKEWGLIDEI 197


>gi|304320978|ref|YP_003854621.1| fatty oxidation complex subunit alpha [Parvularcula bermudensis
           HTCC2503]
 gi|303299880|gb|ADM09479.1| fatty oxidation complex, alpha subunit [Parvularcula bermudensis
           HTCC2503]
          Length = 737

 Score = 43.8 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 75/266 (28%), Gaps = 30/266 (11%)

Query: 30  HVEDNSPHVARIAIR--GQIED--SQELIERIERISRD----DSATALIVSLSSPGGSAY 81
             + +S  +A + I   GQ  +  +Q+L+E  E+++ D    D    L++      G   
Sbjct: 7   SFDVDSDGIALLTIDLPGQSMNVWNQDLVEDFEKMADDFISNDEIKGLVIQSGKDTGFLA 66

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGY----LISCASNIIVAAETSLVGSIGVLFQ 137
             +     I  +           +                    +    +    + V   
Sbjct: 67  GADL--NMISMIPPDADPQFIFDQNYRLQTILRKLETGGKPAKELEKNLAKAKPVAVAVD 124

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
              +   ++ +      V S   K +      +                      +    
Sbjct: 125 GLALGGGMELVLAGHYKVASDSGKTQFGQPEVLVGLIPGAGGTQRIMRLAGVQNAIEIC- 183

Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
                     + G+     +AK++GLID +  ++E+          ++  K+      K+
Sbjct: 184 ----------TQGKNMDAEKAKRLGLIDEIAPKDEIVAKAKEW--VKANPKVVQPWDQKS 231

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTK 283
           +    + N    ++    +P+     
Sbjct: 232 F---KIPNGGGGAMNPKIVPIFAGAS 254


>gi|110680063|ref|YP_683070.1| ATP-dependent Clp protease proteolytic subunit [Roseobacter
           denitrificans OCh 114]
 gi|116243162|sp|Q165F9|CLPP_ROSDO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|109456179|gb|ABG32384.1| Clp protease, putative [Roseobacter denitrificans OCh 114]
          Length = 208

 Score = 43.8 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 62/190 (32%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++ A  + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 37  IIFLNGPVHDGMSSLIVAQLLHLEAENPAKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +  + +  +   S V        Y                   
Sbjct: 97  STLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMVHQPSGGYQG----------------- 139

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                +    +    K    + ++        ++ V             L      +  E
Sbjct: 140 --QATDIMIHAAETQKLKDRLNEIYVKHTGQTMKKV----------VDALERDNFMSPEE 187

Query: 218 AKKVGLIDVV 227
           AK+ GLID +
Sbjct: 188 AKEFGLIDEI 197


>gi|294627913|ref|ZP_06706492.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292597827|gb|EFF41985.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
          Length = 208

 Score = 43.8 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D  +  ++ ++  +  D+    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 36  LIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPGGVVTAGMAIYDTMQYIKPDV 95

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S A+    A   S V     L  +      +D     I ++  
Sbjct: 96  STICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATDIDIHAREILTL-- 153

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                             ++++      +            +  
Sbjct: 154 ----------------------------RSRLNEILAKHTGQSLETIARDTERDNFKSAV 185

Query: 217 EAKKVGLIDVV 227
           +A+  GL+D V
Sbjct: 186 DAQAYGLVDQV 196


>gi|46241445|gb|AAS82922.1| capsid protein [Wolbachia phage WO]
          Length = 141

 Score = 43.8 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   +  ++++ +Q  VD  Y  F++L++ +R +  +K      G  + G +A ++GL D
Sbjct: 1   PHEPMTSESLESLQKEVDRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59

Query: 226 VVGGQEEVWQS 236
            V    E    
Sbjct: 60  GVTTFFEFINK 70


>gi|322700293|gb|EFY92049.1| ATP-dependent Clp protease proteolytic subunit 1 [Metarhizium
           acridum CQMa 102]
          Length = 174

 Score = 43.8 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 59/195 (30%), Gaps = 24/195 (12%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           S  ++ ++  +  D     + + ++SPGGS  +G AI+  +  +K+    +      + +
Sbjct: 2   SASIVAQLLWLESDTPEKPITMYINSPGGSVTSGMAIYDTMTYIKSPVSTVCVGGAASMA 61

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L    +    A   S +     L         +      I+ ++    K      ++
Sbjct: 62  AILLAGGEAGKRFALPHSSIMIHQPLGGTRGQASDILIYANQIQRIREQSNKIMQYHLNK 121

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-AEAKKVGLIDVVG 228
                                           ++   + +   +    EA  +G+ID + 
Sbjct: 122 AKGTD-----------------------KYSLEEVNDMMERDKYLSVDEALDLGVIDGIL 158

Query: 229 GQEEVWQSLYALGVD 243
            +    +       D
Sbjct: 159 TKRTDKKEGEEKKTD 173


>gi|315427239|dbj|BAJ48852.1| membrane-bound serine protease, ClpP class [Candidatus
           Caldiarchaeum subterraneum]
          Length = 422

 Score = 43.8 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 79/261 (30%), Gaps = 44/261 (16%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSP 76
           +  L +V           +P V  + I G I     +   IER        A+++++++ 
Sbjct: 3   IAALLLVCSVLLLSSYSETPQVLYLTIDGYISSGTAM--YIERTLASSRYEAVVITINTL 60

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GGSA A   I  AI++                                  +L     +L 
Sbjct: 61  GGSADAMLRIVEAIERSPTPIIGFVYP-------------------VGGKALSAGTYILM 101

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
              +     + L  S + V                     + +  V + +   +  ++ES
Sbjct: 102 STHFAAMAPETLIGSAQPVAGGEP----------------VTESKVLNFFAEKMGTLAES 145

Query: 197 RNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
           R    D+    + + + +  + A + GLI+ V         +  L      R ++     
Sbjct: 146 RGRNRDEAVKTVLENKNFNPSSALEAGLIEAVAS------DMEELLALADGRTVRTVTGE 199

Query: 256 KNYWFCDLKNLSISSLLEDTI 276
           K           I   + +++
Sbjct: 200 KTLNLRSAVLTEIRPGVTESL 220


>gi|15616126|ref|NP_244431.1| ATP-dependent Clp protease proteolytic subunit [Bacillus halodurans
           C-125]
 gi|11386690|sp|Q9K709|CLPP1_BACHD RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|10176188|dbj|BAB07283.1| ATP-dependent Clp protease proteolytic subunit [Bacillus halodurans
           C-125]
          Length = 194

 Score = 43.8 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IIMLGTAIDDNVANSIVAQLLFLQAEDPDKDISLYINSPGGSITAGMAIYDTMQYIKPNV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   S V     L         ++           
Sbjct: 89  STICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGTRGQASDIEIHTRR------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +        R+++E    P ++           T  
Sbjct: 143 ------------------------ILEMRETLNRILAERTGQPLEQIAKDTDRDNFMTAE 178

Query: 217 EAKKVGLIDVV 227
           +A++ GLID V
Sbjct: 179 KAREYGLIDKV 189


>gi|88855133|ref|ZP_01129798.1| ATP-dependent Clp protease proteolytic subunit [marine
           actinobacterium PHSC20C1]
 gi|88815661|gb|EAR25518.1| ATP-dependent Clp protease proteolytic subunit [marine
           actinobacterium PHSC20C1]
          Length = 224

 Score = 43.8 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 60/184 (32%), Gaps = 27/184 (14%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    +++ ++SPGGS  A  AI+  +Q ++     +      +
Sbjct: 60  ASADDVMAQLLVLESQDPDRDIVMYINSPGGSFTAMTAIYDTMQYIRPHIQTVVLGQAAS 119

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A           +A   + +                D    + + ++           
Sbjct: 120 AAAVITAGGTKGKRLALPNARIMIHQPAGGSEGSSQASDIEIQAREILRM---------- 169

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
                     +++ +    +     V++           +   +I +  EA + GLID V
Sbjct: 170 -------RTWLEETLSHHSNRTAEQVNK----------DIERDKILSATEAVEYGLIDQV 212

Query: 228 GGQE 231
               
Sbjct: 213 LTSR 216


>gi|307129927|ref|YP_003881943.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Dickeya dadantii 3937]
 gi|306527456|gb|ADM97386.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Dickeya dadantii 3937]
          Length = 207

 Score = 43.4 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +           S V     L  +      ++           
Sbjct: 102 STICMGQAASMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L+++    P +         R  + A
Sbjct: 156 ------------------------ILKVKARMNELMAKHTGQPLEAIERDTERDRFLSAA 191

Query: 217 EAKKVGLIDVVGGQEE 232
           EA   GL+D V    E
Sbjct: 192 EAVDYGLVDSVLTHRE 207


>gi|254492068|ref|ZP_05105244.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylophaga
           thiooxidans DMS010]
 gi|224462732|gb|EEF79005.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylophaga
           thiooxydans DMS010]
          Length = 212

 Score = 43.4 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     ++ ++  +  ++    + + ++SPGG+  AG AI+  +Q VK   
Sbjct: 43  VIFLVGPVEDQMANLIVAQLLFLESENPDKDIHLYINSPGGAVTAGMAIYDTMQFVKPNV 102

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S +     L  +       D     I S+  
Sbjct: 103 STLCIGQAASMGAVLLAGGAEGKRHCLPNSRIMVHQPLGGFQGQASDFDIHAKEILSI-- 160

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                             +++       +             G 
Sbjct: 161 ----------------------------RDRLNGILAHHTGQDIEAIRRDTDRDNFMNGE 192

Query: 217 EAKKVGLIDVVGGQE 231
           +A + GLID V    
Sbjct: 193 QALEYGLIDSVLTSR 207


>gi|118594831|ref|ZP_01552178.1| Peptidase S14, ClpP [Methylophilales bacterium HTCC2181]
 gi|118440609|gb|EAV47236.1| Peptidase S14, ClpP [Methylophilales bacterium HTCC2181]
          Length = 209

 Score = 43.4 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 62/195 (31%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G ++D     ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 41  VVFLVGPVDDMTANVVVAQLLFLEAENPDKDISLYINSPGGSVTAGMAIYDTMQFIKPDI 100

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A+    +   S V     L  +      ++           
Sbjct: 101 STLCIGQAASMGALLLTAGAAKKRFSLPNSRVMIHQPLGGFQGQASDIEIHAKE------ 154

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +        ++++E      +K           +  
Sbjct: 155 ------------------------ILYLKEKLNKIMAEHSGQSLEKVSKDTDRDNFMSAK 190

Query: 217 EAKKVGLIDVVGGQE 231
           +A + GLID V    
Sbjct: 191 DAMEYGLIDKVISSR 205


>gi|57237197|ref|YP_178209.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni RM1221]
 gi|86149593|ref|ZP_01067823.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|86151504|ref|ZP_01069719.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|86153638|ref|ZP_01071841.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|88597431|ref|ZP_01100666.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|148926357|ref|ZP_01810041.1| ATP-dependent clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|153951283|ref|YP_001397440.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|157414501|ref|YP_001481757.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|205356561|ref|ZP_03223324.1| ATP-dependent CLp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|218561871|ref|YP_002343650.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|315123791|ref|YP_004065795.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|9297087|sp|P54413|CLPP_CAMJE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460171|sp|Q5HWX6|CLPP_CAMJR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201811|sp|A7H1R0|CLPP_CAMJD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|172047014|sp|A8FJZ3|CLPP_CAMJ8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|57166001|gb|AAW34780.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni RM1221]
 gi|85839861|gb|EAQ57120.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|85841851|gb|EAQ59098.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|85842599|gb|EAQ59811.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|88190492|gb|EAQ94466.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|112359577|emb|CAL34361.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|145844749|gb|EDK21854.1| ATP-dependent clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|152938729|gb|ABS43470.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|157385465|gb|ABV51780.1| ATP-dependent clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|205345566|gb|EDZ32206.1| ATP-dependent CLp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|284925484|gb|ADC27836.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni IA3902]
 gi|307747143|gb|ADN90413.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315017513|gb|ADT65606.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|315057629|gb|ADT71958.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni S3]
 gi|315928124|gb|EFV07442.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni DFVF1099]
 gi|315930200|gb|EFV09315.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 305]
 gi|315931999|gb|EFV10952.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 327]
          Length = 194

 Score = 43.4 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  ++ ++  +  +D    + + ++SPGG   +G +I+  +  +K   
Sbjct: 28  IIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     A   S +     L         ++           
Sbjct: 88  CTICIGQAASMGAFLLSCGAEGKRFALPNSRIMIHQPLGGARGQATDIE----------- 136

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                              +    +         +++++      K    ++   + +  
Sbjct: 137 -------------------IQAKEILRLKTILNDILAKNTKQKVAKIAKDTERDFFMSAQ 177

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 178 EAKEYGLIDKV 188


>gi|300900508|ref|ZP_07118675.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 198-1]
 gi|300924164|ref|ZP_07140156.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 182-1]
 gi|300937054|ref|ZP_07151920.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 21-1]
 gi|300958005|ref|ZP_07170169.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 175-1]
 gi|300988008|ref|ZP_07178488.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 45-1]
 gi|300997374|ref|ZP_07181714.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 200-1]
 gi|301022569|ref|ZP_07186441.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 69-1]
 gi|301049644|ref|ZP_07196593.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 185-1]
 gi|301301588|ref|ZP_07207723.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 124-1]
 gi|301647363|ref|ZP_07247175.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 146-1]
 gi|309787029|ref|ZP_07681641.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           dysenteriae 1617]
 gi|312964538|ref|ZP_07778794.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 2362-75]
 gi|312970533|ref|ZP_07784714.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 1827-70]
 gi|300298581|gb|EFJ54966.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 185-1]
 gi|300304193|gb|EFJ58713.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 200-1]
 gi|300315272|gb|EFJ65056.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 175-1]
 gi|300355989|gb|EFJ71859.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 198-1]
 gi|300397450|gb|EFJ80988.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 69-1]
 gi|300407560|gb|EFJ91098.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 45-1]
 gi|300419617|gb|EFK02928.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 182-1]
 gi|300457885|gb|EFK21378.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 21-1]
 gi|300843085|gb|EFK70845.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 124-1]
 gi|301074508|gb|EFK89314.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 146-1]
 gi|308924607|gb|EFP70102.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           dysenteriae 1617]
 gi|310337182|gb|EFQ02320.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 1827-70]
 gi|312290772|gb|EFR18649.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 2362-75]
 gi|313646936|gb|EFS11393.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           flexneri 2a str. 2457T]
 gi|315256265|gb|EFU36233.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 85-1]
 gi|315289845|gb|EFU49235.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 110-3]
 gi|315294229|gb|EFU53580.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 153-1]
 gi|315299561|gb|EFU58809.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 16-3]
 gi|315616622|gb|EFU97239.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 3431]
 gi|323153474|gb|EFZ39728.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli EPECa14]
 gi|323160452|gb|EFZ46400.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli E128010]
 gi|323164238|gb|EFZ50045.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           sonnei 53G]
 gi|323170523|gb|EFZ56173.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli LT-68]
 gi|323178294|gb|EFZ63872.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 1180]
 gi|323184732|gb|EFZ70103.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 1357]
 gi|323191357|gb|EFZ76620.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli RN587/1]
 gi|324010068|gb|EGB79287.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 57-2]
 gi|324010651|gb|EGB79870.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 60-1]
 gi|324016702|gb|EGB85921.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 117-3]
 gi|325498272|gb|EGC96131.1| ATP-dependent Clp protease proteolytic subunit [Escherichia
           fergusonii ECD227]
 gi|327254765|gb|EGE66381.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli STEC_7v]
 gi|332085596|gb|EGI90760.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           dysenteriae 155-74]
 gi|332094593|gb|EGI99639.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           boydii 5216-82]
 gi|332098592|gb|EGJ03558.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           boydii 3594-74]
 gi|332341801|gb|AEE55135.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli UMNK88]
 gi|332760728|gb|EGJ91016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           flexneri 4343-70]
 gi|332761448|gb|EGJ91730.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           flexneri 2747-71]
 gi|332763735|gb|EGJ93973.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           flexneri K-671]
 gi|332768358|gb|EGJ98542.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           flexneri 2930-71]
 gi|333007966|gb|EGK27442.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           flexneri K-218]
 gi|333008123|gb|EGK27598.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           flexneri VA-6]
 gi|333010898|gb|EGK30324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           flexneri K-272]
 gi|333020699|gb|EGK39959.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           flexneri K-227]
 gi|333021875|gb|EGK41123.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           flexneri K-304]
          Length = 194

 Score = 43.4 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 29  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  Y      ++           
Sbjct: 89  STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 143 ------------------------ILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAP 178

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 179 EAVEYGLVDSILT 191


>gi|154492065|ref|ZP_02031691.1| hypothetical protein PARMER_01696 [Parabacteroides merdae ATCC
           43184]
 gi|154087879|gb|EDN86924.1| hypothetical protein PARMER_01696 [Parabacteroides merdae ATCC
           43184]
          Length = 161

 Score = 43.4 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 7/121 (5%)

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLIDVVG 228
           ++    + MQ +VDS ++     V+ESR I       L+DG  +    EA   G++D + 
Sbjct: 1   MSNANREQMQLLVDSYWNVMAEAVAESRGIELSTLNRLADGLEVSLAQEALDHGMVDGLL 60

Query: 229 G---QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
                ++V++   A+  +    +        +    DLK++S S +    I       V 
Sbjct: 61  FEDQMDDVFREYGAVAKNDGQFEFVTLGQYVSQLNADLKSISSSHI---AIVYADGAIVD 117

Query: 286 G 286
           G
Sbjct: 118 G 118


>gi|152940719|gb|ABS44859.1| capsid protein [Wolbachia phage WO]
          Length = 134

 Score = 43.4 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   +  ++++ +Q  V   Y  FV+L++ +R +  +K      G  + G +A ++GL D
Sbjct: 1   PHEPMTSESLESLQKEVGRLYEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59

Query: 226 VVGGQEEVWQ 235
            V    E   
Sbjct: 60  GVTTFFEFIN 69


>gi|92114168|ref|YP_574096.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Chromohalobacter salexigens DSM 3043]
 gi|116243130|sp|Q1QVW1|CLPP_CHRSD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|91797258|gb|ABE59397.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Chromohalobacter salexigens DSM 3043]
          Length = 206

 Score = 43.4 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 39  VIFLIGPVEDYMANLVVAQMLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 98

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A+        S +     L  Y      ++     I ++  
Sbjct: 99  STVCVGQAASMGALLLAGGAAGKRYCLPHSRMMIHQPLGGYQGQAADIEIHTKEILNI-- 156

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                             ++++      +             G 
Sbjct: 157 ----------------------------RQQLNEILAKHTGQDAETVARDTDRDNFMNGT 188

Query: 217 EAKKVGLIDVVGG 229
           +A + GLID +  
Sbjct: 189 QAVEYGLIDAMLD 201


>gi|111221348|ref|YP_712142.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Frankia alni ACN14a]
 gi|111148880|emb|CAJ60559.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Frankia alni ACN14a]
          Length = 213

 Score = 43.4 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 61/186 (32%), Gaps = 33/186 (17%)

Query: 43  IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102
           +   I ++  +  ++  ++ +D    + + ++SPGGS  AG AI+  +Q V+N    ++ 
Sbjct: 46  VEDSIANA--ICAQLLLLNAEDPTRDIFLYINSPGGSVSAGMAIYDTMQFVENDVATVSL 103

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
               +     L + A     +   + +                                 
Sbjct: 104 GLAASMGQFLLCAGAPGKRYSLPHARIMMHQPSGGIGG---------------------- 141

Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKV 221
                       + +  + +  +       ++     P ++    SD  R +T  EAK  
Sbjct: 142 --------TASDIAIQAEQMLYTKRMMQERIAFHTGQPIEQIERDSDRDRWFTAEEAKDY 193

Query: 222 GLIDVV 227
           G +D V
Sbjct: 194 GFVDHV 199


>gi|261366992|ref|ZP_05979875.1| Clp protease [Subdoligranulum variabile DSM 15176]
 gi|282571110|gb|EFB76645.1| Clp protease [Subdoligranulum variabile DSM 15176]
          Length = 196

 Score = 43.4 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 49/183 (26%), Gaps = 28/183 (15%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  ++ ++  +   D    +   ++SPGGS   G AI   +  +K     I      +
Sbjct: 39  TSASVVVAQLLYLEGQDPEKDIYFYINSPGGSISDGMAIHDTMNYIKCDVSTICIGMAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             +  L S       A   S +     L     +      + +    +            
Sbjct: 99  MGSFLLASGTKGKRFALPNSEILIHQPLISGGGISGQATDIQIHANHIIH---------- 148

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226
                                  +L S+      +            T  +AK+ GLID 
Sbjct: 149 -----------------IRERMNQLYSQYTGQALETIQRDTERDNYMTAQQAKEYGLIDD 191

Query: 227 VGG 229
           +  
Sbjct: 192 ILY 194


>gi|78223080|ref|YP_384827.1| ATP-dependent Clp protease proteolytic subunit [Geobacter
           metallireducens GS-15]
 gi|90101408|sp|Q39UH2|CLPP_GEOMG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|78194335|gb|ABB32102.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacter
           metallireducens GS-15]
          Length = 199

 Score = 43.4 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D  +  +I ++  +  +D    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 28  IIFLGGPIDDHVANLVIAQLLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMQYIKAPV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L         +   S +     L  +                   
Sbjct: 88  STICVGQAASMGALLLSGGEKGKRFSLTHSRIMIHQPLGGFQGQ---------------- 131

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            + +    +         +++E+     +K    ++   + +G 
Sbjct: 132 --------------ATDIHIHAQEILKMKKRLNEIIAENSGQALEKVEADTERDYFMSGE 177

Query: 217 EAKKVGLIDVV 227
           EAK  G+ID +
Sbjct: 178 EAKSYGIIDAI 188


>gi|326391311|ref|ZP_08212851.1| protein of unknown function DUF107 [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325992640|gb|EGD51092.1| protein of unknown function DUF107 [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 442

 Score = 43.4 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 88/264 (33%), Gaps = 39/264 (14%)

Query: 38  VARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95
           V  ++I G I    +  +   ++   ++  A+ +++ LS+PGG     + I   I  + +
Sbjct: 33  VYVLSIDGPIVPVVADYIESGLQEAEKN-GASCIVIELSTPGGLYSTTQKIVTKI--LNS 89

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
             PV+  V             A     +A T +  S  V    P  +             
Sbjct: 90  HIPVVVYVSP-----------AGAWAGSAGTFITLSANVAAMAPGSRIGA---------- 128

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWT 214
                       S ++    Q +     +        ++E+R          + + + +T
Sbjct: 129 ---AHPVSMEDDSALSDVQRQKLTHDAAAWIRS----IAENRGRDPKNAEMAVIESKSFT 181

Query: 215 GAEAKKVGLIDVVGG-QEEVWQSLYALGV---DQSIRKIKDWNPPKNYWFCDLKNLSISS 270
             EA    L+D       ++ + +  L V   D +I  ++   P K +     +    + 
Sbjct: 182 DTEALNAHLVDFKATNLNDLLKKINGLTVKNFDGTITTLQTDGPIKYFPMSSAQKFLFAI 241

Query: 271 LLEDTIPLMKQTKVQGL-WAVWNP 293
              +   L+    + G+   +++P
Sbjct: 242 SDPNIAYLLMSAGILGIVLELYHP 265


>gi|293392545|ref|ZP_06636865.1| ATP-dependent Clp protease proteolytic subunit [Serratia odorifera
           DSM 4582]
 gi|291424947|gb|EFE98156.1| ATP-dependent Clp protease proteolytic subunit [Serratia odorifera
           DSM 4582]
          Length = 207

 Score = 43.4 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 59/193 (30%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  +     + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  IIFLTGQVEDHMANLIVAQMLFLEAESPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +           S V     L  Y      ++           
Sbjct: 102 STICMGQACSMGSFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L+++      ++        R  T  
Sbjct: 156 ------------------------ILKVKARMNELMAQHTGQSLEQIDRDTERDRFMTAE 191

Query: 217 EAKKVGLIDVVGG 229
           E+ + GL+D +  
Sbjct: 192 ESVEYGLVDGILT 204


>gi|241205772|ref|YP_002976868.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240859662|gb|ACS57329.1| Endopeptidase Clp [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 194

 Score = 43.4 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 65/196 (33%), Gaps = 38/196 (19%)

Query: 41  IAIRGQIED--SQELIERI--ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           I I G I    +Q++  ++     + D+      + ++SPGG   +G++I   I+ +K +
Sbjct: 29  IFIYGPINQELAQKVCSQLVALAAASDEDIR---IYVNSPGGHVESGDSIHDMIKFIKPK 85

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
             +I      +A A   ++      +    +             +   ++          
Sbjct: 86  VWMIGTGWVASAGALIYVATPKERRLCLPNTRFLLHQPSGGTRGMASDIE---------- 135

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215
                               +    +        R+++ +   P DK    +D   W + 
Sbjct: 136 --------------------IQAREIIKMNERLNRIMAAATGQPLDKIDKDTDRDYWLSA 175

Query: 216 AEAKKVGLIDVVGGQE 231
            EAK+ GL+  +   +
Sbjct: 176 EEAKEYGLVSRIVTSQ 191


>gi|315427203|dbj|BAJ48817.1| membrane-bound serine protease, ClpP class [Candidatus
           Caldiarchaeum subterraneum]
          Length = 422

 Score = 43.4 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 79/261 (30%), Gaps = 44/261 (16%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSP 76
           +  L +V           +P V  + I G I     +   IER        A+++++++ 
Sbjct: 3   IAALLLVCSVLLLSSYSETPQVLYLTIDGYISSGTAM--YIERTLASSRYEAVVITINTL 60

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GGSA A   I  AI++                                  +L     +L 
Sbjct: 61  GGSADAMLRIVEAIERSPTPVIGFVYP-------------------VGGKALSAGTYILM 101

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
              +     + L  S + V                     + +  V + +   +  ++ES
Sbjct: 102 STHFAAMAPETLIGSAQPVAGGEP----------------VTESKVLNFFAEKMGTLAES 145

Query: 197 RNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
           R    D+    + + + +  + A + GLI+ V         +  L      R ++     
Sbjct: 146 RGRNRDEAVKTVLENKNFNPSSALEAGLIEAVAS------DMEELLALADGRTVRTVTGE 199

Query: 256 KNYWFCDLKNLSISSLLEDTI 276
           K           I   + +++
Sbjct: 200 KTLNLRSAVLTEIRPGVTESL 220


>gi|154509333|ref|ZP_02044975.1| hypothetical protein ACTODO_01858 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798967|gb|EDN81387.1| hypothetical protein ACTODO_01858 [Actinomyces odontolyticus ATCC
           17982]
          Length = 214

 Score = 43.4 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 68/188 (36%), Gaps = 30/188 (15%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D  + + + ++SPGGS  A  AI+  +Q +K +   +      +
Sbjct: 56  ASADDVMAQLLVLESQDPDSLITMYINSPGGSFTALTAIYDTMQYIKPQIQTVCLGQAAS 115

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L + +    +A   + V       +    +                         
Sbjct: 116 AAAVLLAAGSPGKRLALPNARVLIHQPAMEGMQGQA------------------------ 151

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226
                  +Q++ D +D    W    +S+    P ++    +   +I T  +A + GLID 
Sbjct: 152 -----SDIQIVADEIDRMRAWLEDTISKHSGKPVEQVRRDIERDKILTAPQAAEYGLIDQ 206

Query: 227 VGGQEEVW 234
           V    +  
Sbjct: 207 VLESRKAL 214


>gi|325922708|ref|ZP_08184448.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
           gardneri ATCC 19865]
 gi|325546825|gb|EGD17939.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
           gardneri ATCC 19865]
          Length = 196

 Score = 43.4 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D  +  ++ ++  +  D+    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 24  LIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPGGVVTAGMAIYDTMQYIKPDV 83

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S A+    A   S V     L  +      +D     I ++  
Sbjct: 84  STICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATDIDIHAREILTL-- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                             ++++      +            +  
Sbjct: 142 ----------------------------RSRLNEILAKHTGQSLETIGRDTERDNFKSAV 173

Query: 217 EAKKVGLIDVV 227
           +A+  GL+D V
Sbjct: 174 DAQAYGLVDQV 184


>gi|293369840|ref|ZP_06616413.1| Clp protease [Bacteroides ovatus SD CMC 3f]
 gi|292635017|gb|EFF53536.1| Clp protease [Bacteroides ovatus SD CMC 3f]
          Length = 353

 Score = 43.4 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 71/246 (28%), Gaps = 42/246 (17%)

Query: 39  ARIAIRGQIE----DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           ARI ++G I        E   ++E + +      + + ++SPGG  +    I   I++  
Sbjct: 12  ARIELKGTISKWRETEAEFTSKVEELIK-SGVKDVHIYINSPGGECFEANEIVNVIKRFP 70

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
            +  +  E   + ASA   I+            L     V                    
Sbjct: 71  GK--ITGEGGALVASAATYIAINCTSFSMPANGLFMIHQVSGG----------------- 111

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213
                +    S    +       +   +                          +G  W 
Sbjct: 112 -ACGKVADIESTLEVMRKLNEHYLNAFLSKCTD------------KKKIKDAWDNGDYWM 158

Query: 214 TGAEAKKVGLIDVVGG---QEEVWQSLYALGVDQSIRKIKDW-NPPKNYWFCDLKNLSIS 269
           +  EAK+ G +  V G    ++    +          +I D+ N  K+    DL  L+  
Sbjct: 159 SAQEAKENGFVTEVTGKAKVDKATAQMITNCGYTGEIEITDFINNEKSKNDMDLTMLTTR 218

Query: 270 SLLEDT 275
             ++ +
Sbjct: 219 FGMDAS 224


>gi|323340198|ref|ZP_08080462.1| ATP-dependent Clp protease, protease subunit [Lactobacillus ruminis
           ATCC 25644]
 gi|323092389|gb|EFZ34997.1| ATP-dependent Clp protease, protease subunit [Lactobacillus ruminis
           ATCC 25644]
          Length = 197

 Score = 43.4 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 59/192 (30%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D     +I ++  +   DS   + + ++SPGGS  AG AI+  +  V    
Sbjct: 29  IIMVSGEVTDDMANAVIAQLLFLDAQDSEKDIYMYINSPGGSVSAGLAIYDTMNFVNADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++    + A     A   S +     L                      
Sbjct: 89  QTIVMGMAASMASVLSTAGAKGKRFALPNSEIMIHQPLGGAQGQST-------------- 134

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            +Q+  + +  +     +++++      +            T  
Sbjct: 135 ----------------EIQIAAEHILKTRKLINQILADHSGQDIETINKDTERDNFMTAQ 178

Query: 217 EAKKVGLIDVVG 228
           +A   GLID + 
Sbjct: 179 QAVDYGLIDGIM 190


>gi|21230439|ref|NP_636356.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66769567|ref|YP_244329.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|25008306|sp|Q8PBY6|CLPP_XANCP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|81304478|sp|Q4URL4|CLPP_XANC8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|21112001|gb|AAM40280.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66574899|gb|AAY50309.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 208

 Score = 43.4 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D  +  ++ ++  +  D+    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 36  LIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPGGVVTAGMAIYDTMQYIKPDV 95

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S A+    A   S V     L  +      +D     I ++  
Sbjct: 96  STICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATDIDIHAREILTL-- 153

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                             ++++      +            +  
Sbjct: 154 ----------------------------RSRLNEILAKHTGQSLETIARDTERDNFKSAV 185

Query: 217 EAKKVGLIDVV 227
           +A+  GL+D V
Sbjct: 186 DAQAYGLVDHV 196


>gi|325970910|ref|YP_004247101.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta sp.
           Buddy]
 gi|324026148|gb|ADY12907.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta sp.
           Buddy]
          Length = 202

 Score = 43.4 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 64/192 (33%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I   ++  ++ ++  +  +DS   + + ++SPGGS  AG AI+  IQ +  + 
Sbjct: 37  IIFLDGEIHDANADLVVAQMLFLDSEDSTKDISLYINSPGGSVTAGLAIYDTIQYLHCKV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L S +        ++ V                            
Sbjct: 97  QTICMGQAASMAALLLASGSEGKRFMLPSARVMIHQPWGGVEGQST-------------- 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                            + +    +       + ++++  +  +++    +      +  
Sbjct: 143 ----------------DISIHAKEISRLKKLTIDIIAQHTHKSFEQVSKDVERDFFLSSD 186

Query: 217 EAKKVGLIDVVG 228
           +A   G++D V 
Sbjct: 187 DAVSYGIVDSVM 198


>gi|224438107|ref|ZP_03659042.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           cinaedi CCUG 18818]
 gi|313144547|ref|ZP_07806740.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           cinaedi CCUG 18818]
 gi|313129578|gb|EFR47195.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           cinaedi CCUG 18818]
          Length = 196

 Score = 43.4 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 59/193 (30%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  ++ ++  +  +D    +   ++SPGG   +  +I+  +  +++  
Sbjct: 30  IILLSGEINDHIASSIVAQLLFLEAEDPDKDINFYINSPGGVITSAFSIYDTMNYIRSDI 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +A A  L S       +   S +     L         ++           
Sbjct: 90  STICIGQAASAGAFLLSSGTKGKRFSLPNSRIMIHQPLGGAQGQATDIE----------- 138

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                              +    +         +++E+     +            +G 
Sbjct: 139 -------------------IQAKEILRLKKILNEIMAENTGQSVENITQDTERDFFMSGE 179

Query: 217 EAKKVGLIDVVGG 229
           EAK  GL+D +  
Sbjct: 180 EAKDYGLVDKILT 192


>gi|189200839|ref|XP_001936756.1| ATP-dependent Clp protease proteolytic subunit 1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187983855|gb|EDU49343.1| ATP-dependent Clp protease proteolytic subunit 1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 244

 Score = 43.4 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 61/200 (30%), Gaps = 31/200 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+++D  S   + ++  +  D+    + + ++SPGGS  AG AI+  +  +K+  
Sbjct: 68  IICLNGEVDDFMSANAVAQLLFLEADNPEKPISMYINSPGGSVSAGLAIYDTMNYIKSPV 127

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L   A         + V            +     +    K +  
Sbjct: 128 STICMGIAASMGSLLLAGGAEGQRYILPHARVMIHQPSG---GYRGKASDIADHAKEILR 184

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
              K      S +                               ++     +   +    
Sbjct: 185 IRDKLNRIYQSHLT-------------------------TKRSLEEIEKYMERDYYMDAQ 219

Query: 217 EAKKVGLIDVVGGQEEVWQS 236
           EA + G++D +  + E+   
Sbjct: 220 EAVEFGIVDKILEKREISAK 239


>gi|167646810|ref|YP_001684473.1| ATP-dependent Clp protease proteolytic subunit [Caulobacter sp.
           K31]
 gi|189082451|sp|B0SZQ2|CLPP_CAUSK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|167349240|gb|ABZ71975.1| Endopeptidase Clp [Caulobacter sp. K31]
          Length = 208

 Score = 43.4 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 65/202 (32%), Gaps = 34/202 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     +  ++  +  ++    + + ++SPGG   AG AI+  +Q +K+  
Sbjct: 37  IIFLTGPVEDGMASLICAQLLFLESENPKKEIAMYINSPGGVVTAGLAIYDTMQYIKSPV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L + A    +A   + +        +      ++           
Sbjct: 97  STVCMGMAASMGSLLLQAGAPGHRIALPNARIMVHQPSGGFRGQASDIE----------- 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                                 + +  +      +  +     Y++    L      +  
Sbjct: 146 -------------------RHAEDIIKTKRRLNEIYVKHTGRTYEEVEKTLDRDHFMSAE 186

Query: 217 EAKKVGLIDVVG-GQEEVWQSL 237
           EAK  GLID +   ++E  +  
Sbjct: 187 EAKAWGLIDHINESRDEADEKA 208


>gi|332707230|ref|ZP_08427283.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lyngbya
           majuscula 3L]
 gi|332353964|gb|EGJ33451.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lyngbya
           majuscula 3L]
          Length = 200

 Score = 43.4 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 56/176 (31%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  DD    + + ++SPGGS  AG  IF  + +V      I      +  A  
Sbjct: 42  VVAQLLFLEADDQEKDIYLYINSPGGSVTAGMGIFDTMNQVAPDVCTICVGLAASMGAFL 101

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A    ++   S +     L         ++                          
Sbjct: 102 LSAGAKGKRMSLPHSRIMIHQPLGGAQGQASDIE-------------------------- 135

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
               +    +          ++E    P +K    ++   + +  EAK  GLID V
Sbjct: 136 ----IQAKEILYHKQQLNNYLAEHTGQPLEKIQEDTERDFFMSATEAKDYGLIDQV 187


>gi|153813468|ref|ZP_01966136.1| hypothetical protein RUMOBE_03888 [Ruminococcus obeum ATCC 29174]
 gi|149830412|gb|EDM85504.1| hypothetical protein RUMOBE_03888 [Ruminococcus obeum ATCC 29174]
          Length = 193

 Score = 43.4 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 31/181 (17%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  ++ ++  +  +D +  + + ++SPGGS  AG AI+  ++ +K     I      +
Sbjct: 39  VSASVIVAQLLFLEAEDPSKDIQLYINSPGGSVTAGMAIYDTMKYIKCDVSTICLGMAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L         A   S +               +  +                   
Sbjct: 99  MGAFLLAGGTKGKRFALPHSTIMIHQPSGGAQGQATEIQIVAD----------------- 141

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDV 226
                         +  +      +++E+   PY+     +D   + T  EAK  GLID 
Sbjct: 142 -------------HIAQTKRTLNEILAENTGQPYEVVEKDTDRDNYMTAEEAKAYGLIDG 188

Query: 227 V 227
           V
Sbjct: 189 V 189


>gi|29654072|ref|NP_819764.1| ATP-dependent endopeptidase clp proteolytic subunit [Coxiella
           burnetii RSA 493]
 gi|161830533|ref|YP_001596950.1| ATP-dependent Clp protease proteolytic subunit [Coxiella burnetii
           RSA 331]
 gi|60389768|sp|Q83DJ2|CLPP_COXBU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082454|sp|A9NDG0|CLPP_COXBR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|29541338|gb|AAO90278.1| ATP-dependent endopeptidase clp proteolytic subunit [Coxiella
           burnetii RSA 493]
 gi|161762400|gb|ABX78042.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coxiella
           burnetii RSA 331]
          Length = 195

 Score = 43.4 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 64/192 (33%), Gaps = 35/192 (18%)

Query: 40  RIAIRGQIED---SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
            I + GQ+ED   +  + + +   S + +   + + ++SPGG+  +  AI+  +Q VK  
Sbjct: 30  VIFLVGQVEDHMANLAIAQMLFLESENPN-KDINLYINSPGGAVTSAMAIYDTMQFVKPD 88

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
              +      +A A  L   A         S V    VL  Y      +       + V 
Sbjct: 89  VRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVMIHQVLGGYQGQGTDIQIHAKQTQRVS 148

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215
                                             +++++      ++    ++   + T 
Sbjct: 149 ------------------------------DQLNQILAKHTGKDIERVEKDTNRDYFLTP 178

Query: 216 AEAKKVGLIDVV 227
            EA + GLID +
Sbjct: 179 EEAVEYGLIDSI 190


>gi|313110498|ref|ZP_07796383.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa 39016]
 gi|310882885|gb|EFQ41479.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa 39016]
          Length = 213

 Score = 43.4 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 67/196 (34%), Gaps = 31/196 (15%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED     ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 45  IIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L   A+        S +     L  +      ++     I  +  
Sbjct: 105 STTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAKEILFI-- 162

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                             + +  ++       + +++                R  +G E
Sbjct: 163 -----------------KERLNQILAHHTRQPLDVIA----------RDTDRDRFMSGDE 195

Query: 218 AKKVGLIDVVGGQEEV 233
           A K GLID V  Q ++
Sbjct: 196 AVKYGLIDKVMTQRDL 211


>gi|291542673|emb|CBL15783.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus
           bromii L2-63]
          Length = 193

 Score = 43.4 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 55/181 (30%), Gaps = 31/181 (17%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  ++ ++  +   D    + + ++SPGGS   G AIF  +  +K     I      +
Sbjct: 39  ASASVVVAQLLYLESKDPTKDISLYINSPGGSVTDGFAIFDTMNYIKCDVSTICMGMAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L + A    +A   S +               ++                     
Sbjct: 99  MGAFLLAAGAKGKRLALPNSDIMIHQPSGGAQGQATDME--------------------- 137

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226
                    +    +        ++++++   P D      +     T  +A + GLID 
Sbjct: 138 ---------IHTRHILDMKKRLNQILADNTGQPIDVIAKDTNRDNFMTAQQALEYGLIDK 188

Query: 227 V 227
           V
Sbjct: 189 V 189


>gi|227485897|ref|ZP_03916213.1| peptidase S14, ClpP [Anaerococcus lactolyticus ATCC 51172]
 gi|227236130|gb|EEI86145.1| peptidase S14, ClpP [Anaerococcus lactolyticus ATCC 51172]
          Length = 380

 Score = 43.4 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 72/236 (30%), Gaps = 43/236 (18%)

Query: 30  HVEDNSPHVARIAIRGQIED----------SQELIERIERISRDDSATALIVSLSSPGGS 79
           +       +A + I G I D           +     +  + ++D    LI+ ++S GG 
Sbjct: 11  NFAIQEEGIAEVTIYGNISDKIDWELGEINPEFFSSDLAYLEQED-INTLIIRINSAGGD 69

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
            +A  AI+  +++ K +K V               + A+ II  A   +  +        
Sbjct: 70  VFAATAIYSRLKEFKAKKIV---------KIDGWAASAATIIAMAGDEIEIAPNGSLMIH 120

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                L+    +   +K                         +++     +         
Sbjct: 121 DPLFGLEGYFNAKDLIKYIEQ---------------------LETIKKSIINAYKTKTGK 159

Query: 200 PYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQE-EVWQSLYALGVDQSIRKIKDWN 253
             ++   L +   W TG EA   G  D +  +E +V  +         +  + D+ 
Sbjct: 160 TEEELAQLMEAETWYTGQEAVDAGFCDRLMFEEADVAATADGQIKVNGVLMVSDFK 215


>gi|157964626|ref|YP_001499450.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           massiliae MTU5]
 gi|157844402|gb|ABV84903.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           massiliae MTU5]
          Length = 216

 Score = 43.4 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 55/188 (29%), Gaps = 31/188 (16%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  ++    + + ++SPGG   AG AI+  +Q +K +   +      +  +  
Sbjct: 59  IVAQLLFLEAENPKKDIYIYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLL 118

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L      +  +   S +        Y      ++        +K                
Sbjct: 119 LCGGEQGMRYSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIK---------------- 162

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQE 231
                              L S+            +      +  EAKK GL+D +    
Sbjct: 163 --------------RLLNELYSKHTGQELKHIEKSMERDNFMSPEEAKKFGLVDNIISSR 208

Query: 232 EVWQSLYA 239
           +V   L  
Sbjct: 209 DVIALLAK 216


>gi|126732556|ref|ZP_01748354.1| Protease subunit of ATP-dependent Clp protease [Sagittula stellata
           E-37]
 gi|126707002|gb|EBA06070.1| Protease subunit of ATP-dependent Clp protease [Sagittula stellata
           E-37]
          Length = 197

 Score = 43.4 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 62/194 (31%), Gaps = 31/194 (15%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G + D     ++ ++  +  ++ +  + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 24  IVFLNGPVHDGMSSLVVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 83

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L + A+ +  +   S +        Y                   
Sbjct: 84  STLVVGQAASMGSLLLTAGAAGMRFSLPNSRIMVHQPSGGYQG----------------- 126

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                +    +E   K  + + ++           V             L         +
Sbjct: 127 --QATDIMIHAEETIKLKRRLNEIYVRHTGQTYEAVEA----------ALERDNFMDAEK 174

Query: 218 AKKVGLIDVVGGQE 231
           AK+ GLID +    
Sbjct: 175 AKEWGLIDEIVTSR 188


>gi|285017388|ref|YP_003375099.1| ATP-dependent clp protease proteolytic subunit protein [Xanthomonas
           albilineans GPE PC73]
 gi|283472606|emb|CBA15111.1| probable atp-dependent clp protease proteolytic subunit protein
           [Xanthomonas albilineans]
          Length = 208

 Score = 43.4 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D  +  ++ ++  +  D+    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 36  LIFLVGPIDDHMANVVVAQLLFLEADNPEKDISLYINSPGGVVTAGMAIYDTMQYIKPDV 95

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S A+    A   S V     L  +      +D     I ++  
Sbjct: 96  STICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATDIDIHAREILTL-- 153

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                             ++++      +            +  
Sbjct: 154 ----------------------------RARLNEVLAKHTGQSLETIARDTERDNFKSAI 185

Query: 217 EAKKVGLIDVV 227
           +A+  GL+D V
Sbjct: 186 DAQAYGLVDQV 196


>gi|237745591|ref|ZP_04576071.1| ATP-dependent Clp protease [Oxalobacter formigenes HOxBLS]
 gi|229376942|gb|EEO27033.1| ATP-dependent Clp protease [Oxalobacter formigenes HOxBLS]
          Length = 207

 Score = 43.4 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 62/195 (31%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q ++ + 
Sbjct: 42  IIFLVGPVTDQNANLIVAQLLFLESENPEKDISLYINSPGGSVSAGMAIYDTMQFIRPQV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A     +   S +               ++           
Sbjct: 102 STLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMIHQPSGGAQGQATDIEIHARE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +         +++E+   P ++           + A
Sbjct: 156 ------------------------ILYLRERLNGILAENTGKPVEQIARDTERDNFMSAA 191

Query: 217 EAKKVGLIDVVGGQE 231
           EAK  GLID V  + 
Sbjct: 192 EAKDYGLIDEVLTRR 206


>gi|304440714|ref|ZP_07400598.1| ATP-dependent Clp protease proteolytic subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304370901|gb|EFM24523.1| ATP-dependent Clp protease proteolytic subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 194

 Score = 43.4 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 62/196 (31%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G+I +  +  ++ ++  +  +D    + + ++SPGGS  AG AIF  +  +K   
Sbjct: 29  IIFISGEINNVTADLVVAQLLFLESEDPNKDIQIYINSPGGSVSAGFAIFDTMNYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +       A   S +     L         +      I  ++ 
Sbjct: 89  STICIGMAASMGAFLLAAGKKGKRFALPNSEIMIHQPLGGAQGQASDIMIHAEKIIEIRQ 148

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                                +E    P +K           +  
Sbjct: 149 RINKIL------------------------------AEETGQPLEKIEHDTDRDYFLSAD 178

Query: 217 EAKKVGLIDVVGGQEE 232
           EAK+ GLID V  + +
Sbjct: 179 EAKEYGLIDNVIRERD 194


>gi|254421271|ref|ZP_05034989.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. PCC 7335]
 gi|196188760|gb|EDX83724.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. PCC 7335]
          Length = 269

 Score = 43.4 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 61/183 (33%), Gaps = 31/183 (16%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q+++     I      +  
Sbjct: 106 ADSIVAQLLFLDAEDPEKDVQLYINSPGGSVTAGMAIYDTMQQIRPDVVTICFGLAASMG 165

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L   A    ++  ++ +               ++                       
Sbjct: 166 AFLLSGGAKGKRMSLPSARIMIHQPSGGAQGQSADIE----------------------- 202

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228
                  +    +         ++++       +    ++   + +  EAK+ GLID V 
Sbjct: 203 -------IQAREILYLKKRLNEMLADHTGQDISRIEADTERDFFMSAEEAKEYGLIDQVV 255

Query: 229 GQE 231
            ++
Sbjct: 256 SRQ 258


>gi|125591043|gb|EAZ31393.1| hypothetical protein OsJ_15521 [Oryza sativa Japonica Group]
          Length = 221

 Score = 43.4 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 58/190 (30%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++ A  + + ++SPGG   AG AI+  +Q +++  
Sbjct: 24  IVCIHGPITDDTASLVVAQLLFLESENPAKPVHLYINSPGGVVTAGLAIYDTMQYIRSPV 83

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      + ++  L + A     A   + V               +      I     
Sbjct: 84  TTLCIGQAASMASLLLAAGARGERRALPNARVMIHQPSGGASGQASDIAIHAKEI----- 138

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                       +  +          +S           R++  D              E
Sbjct: 139 ------------LKVRDRLNKIYAKHTSQAIDRIEQCMERDMFMD------------PEE 174

Query: 218 AKKVGLIDVV 227
           A   GLID V
Sbjct: 175 AHDWGLIDEV 184


>gi|310779736|ref|YP_003968068.1| peptidase S14 ClpP [Ilyobacter polytropus DSM 2926]
 gi|309749059|gb|ADO83720.1| peptidase S14 ClpP [Ilyobacter polytropus DSM 2926]
          Length = 361

 Score = 43.4 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 77/209 (36%), Gaps = 27/209 (12%)

Query: 22  VVYFSWSSHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVS 72
              FS +   +++      I I G+I +         +      +E+I  ++    ++V 
Sbjct: 6   FWCFSETGSEKNSE-----IKIFGEIVNIPCWEGDVSANSFCRELEKIEAEE----ILVR 56

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           ++SPGG  +  +AI+ +++    +  VI  +  +AASA  +I+ A + I+  E ++    
Sbjct: 57  INSPGGDVFEAQAIYNSLKNHPAK--VIVRIDALAASAATVIAMAGDEILMPENAIFMIH 114

Query: 133 GVLF-------QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
                       +      +D +  +I +V +S              +   +       +
Sbjct: 115 NPWSWSSGEAKDFRKKAETMDTIRETIVNVYASKSTLSREEIMNKMDEESWLTSQEAFDA 174

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
                 L  ++ +   ++      GR+  
Sbjct: 175 GFITEILSLKAEDSDTEEVNNFMRGRVMN 203


>gi|186681335|ref|YP_001864531.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nostoc
           punctiforme PCC 73102]
 gi|186463787|gb|ACC79588.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nostoc
           punctiforme PCC 73102]
          Length = 232

 Score = 43.4 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 71/191 (37%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D+    ++ ++  +  +DS   + + ++SPGGS YAG AI+  IQ+++   
Sbjct: 55  IIFLGTPIDDAVANSIVAQLLFLDSEDSEKDIQMYVNSPGGSVYAGMAIYDTIQQIRPDV 114

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A+   ++   S +     L      +     + +  + +  
Sbjct: 115 VTICFGLAASMGAFLLTAGAAGKRMSLPDSRIMIHQPLG---GAQGQAIDIEIQAREILY 171

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
              K                             +L+S     P ++    ++   + +  
Sbjct: 172 VKAK---------------------------LNQLMSHHTGQPLERIEADTERDFFMSAE 204

Query: 217 EAKKVGLIDVV 227
           EAK  GLID V
Sbjct: 205 EAKNYGLIDQV 215


>gi|327398620|ref|YP_004339489.1| ATP-dependent Clp protease proteolytic subunit [Hippea maritima DSM
           10411]
 gi|327181249|gb|AEA33430.1| ATP-dependent Clp protease proteolytic subunit [Hippea maritima DSM
           10411]
          Length = 205

 Score = 43.4 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 57/195 (29%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D     ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IIMLNGEINDDVSNVIVSQLLFLESEDPEKDIFLYINSPGGSVTAGLAIYDTMQYIKCDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S       +   S +     L         ++           
Sbjct: 89  TTICIGSAASMGALLLASGTKGKRYSLPHSRIMIHQPLGGISGQATEIEIHAKE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
                                   +         ++++            ++   +    
Sbjct: 143 ------------------------ILRLKKLLNEILAKHTGKRLKTIEKDTERDYFMDTK 178

Query: 217 EAKKVGLIDVVGGQE 231
           EA   G+ID +    
Sbjct: 179 EALAYGIIDKIIYSR 193


>gi|168031792|ref|XP_001768404.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680329|gb|EDQ66766.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 201

 Score = 43.4 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  +     + + ++SPGG   AG AI+  +Q +++  
Sbjct: 24  IVCIHGPISDDTASLVVAQLLYLESEHPDKPIHLYINSPGGVVTAGLAIYDTMQYIRSPV 83

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +       +   + V                  + +  + +  
Sbjct: 84  STLCVGQAASMGSLLLAAGQPGERRSLPNARVMIHQPSG---GASGQASDIAIQAREI-- 138

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                            RL  +     Y+K    +      +  
Sbjct: 139 -------------------------LDMRARLSRLYVKHTGHTYEKIESSMERDHFMSPE 173

Query: 217 EAKKVGLIDVV 227
           EAK+ GL+D V
Sbjct: 174 EAKQFGLVDEV 184


>gi|291279199|ref|YP_003496034.1| membrane-bound serine protease [Deferribacter desulfuricans SSM1]
 gi|290753901|dbj|BAI80278.1| membrane-bound serine protease [Deferribacter desulfuricans SSM1]
          Length = 426

 Score = 43.4 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 97/263 (36%), Gaps = 43/263 (16%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-SQELIERIERIS 61
           F + K+K ++++   +   +V +  S+++         I I G I   + + IE+   I 
Sbjct: 9   FSILKMKNKFILTLFIFFILVRYGISANLCA-------IKIDGVISPVTSKFIEQ--TIK 59

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
           + ++   LI+ L++PGG   +   I ++I    ++ PVIT V    A AG   S      
Sbjct: 60  KCENKDGLILYLNTPGGLLTSTREIVQSI--FTSQIPVITVVSPPGARAGSAGSFIV--- 114

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
                                     L      +          P S         M+  
Sbjct: 115 --------------------------LASHYAIMFEGTNIGAAHPVSIFGKDIDGDMRKK 148

Query: 182 VDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDV-VGGQEEVWQSLYA 239
           +++    F++ ++E RN   +K   ++ D + +T  EA K  LID  V   +E+   L  
Sbjct: 149 IENDTIAFMKSIAEKRNRNIEKAISMVKDSKSYTAQEALKFKLIDKVVKNNQELNMYLKN 208

Query: 240 LGVDQSIRKIKDWNPPKNYWFCD 262
           +  D    +  +    +   F  
Sbjct: 209 IFNDNIQIEEIEPTQFEKLKFFL 231


>gi|320094140|ref|ZP_08025953.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319978942|gb|EFW10472.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 201

 Score = 43.4 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D  +  +  ++  ++ +D    + + ++SPGGS  AG A++  +Q +K   
Sbjct: 27  IIWLGGEVRDENANTICAQLLLLAAEDPDRDIYLYINSPGGSVTAGMAVYDTMQYIKPDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +     L + A         + V     L                      
Sbjct: 87  VTVGMGLAASMGQFLLTAGAPGKRYITPHTRVLLHQPLGGAGG----------------- 129

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                        +   +++  D++         + ++      ++    +D   W T  
Sbjct: 130 -------------SATEIRINADLILGMKKELAEITAQRTGKSVEQIEADADRDHWFTAR 176

Query: 217 EAKKVGLIDVV 227
           EA + G +D +
Sbjct: 177 EALEYGFVDQL 187


>gi|302337810|ref|YP_003803016.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta
           smaragdinae DSM 11293]
 gi|301634995|gb|ADK80422.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Spirochaeta
           smaragdinae DSM 11293]
          Length = 205

 Score = 43.4 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 57/190 (30%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I D+    ++ ++  +   D    + + ++SPGGS  AG AI+  IQ +K   
Sbjct: 34  IVFLDGEINDATADLVVAQLLFLESLDPERDISLYINSPGGSVTAGLAIYDTIQYIKPDV 93

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L   ++    A  +S +                            
Sbjct: 94  QTICMGQAASMAALMLTCGSTGKRFALPSSRILIHQP---------------------WG 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                      +           +   S H        +R         L      +  E
Sbjct: 133 GAQGQAVDIGIQAKEIVRLKQLTIRYFSQHTGKGEEVIAR--------DLERDYFLSAEE 184

Query: 218 AKKVGLIDVV 227
           A   G+ID V
Sbjct: 185 AVAYGIIDKV 194


>gi|224419236|ref|ZP_03657242.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|253826954|ref|ZP_04869839.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|313142738|ref|ZP_07804931.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|253510360|gb|EES89019.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|313131769|gb|EFR49386.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           canadensis MIT 98-5491]
          Length = 196

 Score = 43.4 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 63/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQI+D  +  ++ ++  +  +D    + + ++SPGG   +G +I+  +  +K   
Sbjct: 30  IIMLSGQIDDGVAASIVSQLLFLEAEDPQKDIYLYINSPGGVVTSGLSIYDTMNYIKPDI 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L         +   S +     L         ++           
Sbjct: 90  CTICIGQAASMGAFLLSCGTKGKRYSLPNSRIMIHQPLGGAQGQATDIE----------- 138

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                              +    +         +++++ N   +K    +D   + +  
Sbjct: 139 -------------------IQAKEILRLKATLNEILADNTNQSLEKIAKDTDRDFFMSAK 179

Query: 217 EAKKVGLIDVVGG 229
           EAK  GLID +  
Sbjct: 180 EAKDYGLIDNILT 192


>gi|114557515|ref|XP_524757.2| PREDICTED: calcium-activated chloride channel regulator 4 isoform 2
           [Pan troglodytes]
          Length = 919

 Score = 43.4 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 74/265 (27%), Gaps = 21/265 (7%)

Query: 46  QIEDSQELIERIER-----------ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
            I +S++    I             +        L++  S   G       + +A +   
Sbjct: 275 VISNSEDFKNTIPMVTPPPPPVFSLLKISQRIVCLVLDKSGSMGGKDRLNRMNQAAKHFL 334

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV-KPFLDKLGVSIK 153
            +         M             I + +       +  L  YP         +  + +
Sbjct: 335 LQTVENGSWVGMVHFDSTATVVNKLIQIKSSDERNTLMAGLPTYPRGGTSICSGIKYAFQ 394

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW--FVRLVSESRNIPYDKTL--VLSD 209
            +     + + S    +           +D        V  ++  R+          ++ 
Sbjct: 395 VIGELHSQLDGSEVLLLTDGEDNTASSCIDEVKQSGAIVHFIALGRDADEAVIEMSKITG 454

Query: 210 GR-IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
           G   +   EA+  GLID  G        L    +    + +       N W  D   +  
Sbjct: 455 GSHFYVSDEAQNNGLIDAFGALTSGNTDLSQKSLQLESKGL---TLNSNPWMNDTVIID- 510

Query: 269 SSLLEDTIPLMKQTKVQGLWAVWNP 293
           S++ +DT  L+    +    ++W+P
Sbjct: 511 STVGKDTFFLITWNSLPPSISLWDP 535


>gi|307822658|ref|ZP_07652889.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylobacter
           tundripaludum SV96]
 gi|307736262|gb|EFO07108.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylobacter
           tundripaludum SV96]
          Length = 215

 Score = 43.4 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED     ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 45  VIFLVGQVEDYSANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S +     L  Y      +D     I  ++ 
Sbjct: 105 STMCIGQAASMGALLLAGGAKGKRYCLPHSRMMIHQPLGGYQGQASDIDIHAREILLIRE 164

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
              K                                S+    P +K           +  
Sbjct: 165 KLNKIL------------------------------SDHTGQPMEKVQQDTDRDNFLSAN 194

Query: 217 EAKKVGLIDVV 227
           +A   GLID V
Sbjct: 195 DAVSYGLIDQV 205


>gi|295109356|emb|CBL23309.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus
           obeum A2-162]
          Length = 193

 Score = 43.4 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 31/181 (17%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  ++ ++  +  +D +  + + ++SPGGS  AG AI+  ++ +K     I      +
Sbjct: 39  VSASIIVAQLLFLEAEDPSKDIQLYINSPGGSVTAGMAIYDTMKYIKCDVSTICLGMAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L         A   S +               +  +                   
Sbjct: 99  MGAFLLAGGTKGKRYALPHSTIMIHQPSGGAQGQATEIQIVAD----------------- 141

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDV 226
                         +  +      +++E+   PY+     +D   + T  EAK  GLID 
Sbjct: 142 -------------HIAQTKRTLNEILAENTGQPYEVVEKDTDRDNYMTAEEAKAYGLIDG 188

Query: 227 V 227
           V
Sbjct: 189 V 189


>gi|261402510|ref|YP_003246734.1| protein of unknown function DUF114 [Methanocaldococcus vulcanius
           M7]
 gi|261369503|gb|ACX72252.1| protein of unknown function DUF114 [Methanocaldococcus vulcanius
           M7]
          Length = 282

 Score = 43.4 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 72/182 (39%), Gaps = 12/182 (6%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            IEDS+E++  I    +D     +I    +PGG   A   I +A++   +   VI   + 
Sbjct: 72  TIEDSEEILRAIRSAPKDKPIDLII---HTPGGLVLAATQIAKALKNHPSETRVIVPHYA 128

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIG-VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164
           M+   G LI+ A++ I+  E +++G +   L QYP            ++      +    
Sbjct: 129 MSG--GTLIALAADKIIMDENAVLGPVDPQLGQYPAPSIVKAVKEKGVEKADDQTIILAD 186

Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL- 223
                +N     +   + D       + +S+       +    +     T  EA+++GL 
Sbjct: 187 IAQKAINQVQRFVYGLLKDKYGEEKAKELSK----TLTEGR-WTHDYPITVEEARELGLD 241

Query: 224 ID 225
           +D
Sbjct: 242 VD 243


>gi|253579815|ref|ZP_04857083.1| clp protease [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848814|gb|EES76776.1| clp protease [Ruminococcus sp. 5_1_39BFAA]
          Length = 193

 Score = 43.4 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 52/176 (29%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K     I      +  A  
Sbjct: 44  IVSQLLFLEAEDPGKDIQLYINSPGGSVTAGMAIYDTMQYIKCDVSTICLGMAASMGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L   A     A   S +               +  +                        
Sbjct: 104 LAGGAKGKRFALPHSTIMIHQPSGGAQGQATEIQIVAD---------------------- 141

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227
                    +  +      L++ +   P +            T  EAK  GLID V
Sbjct: 142 --------HIAQTKRTLNELLAANTGQPIEVVERDTDRDNYMTAEEAKAYGLIDGV 189


>gi|315185394|gb|EFU19166.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta
           thermophila DSM 6578]
          Length = 206

 Score = 43.4 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 60/190 (31%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G+I D  +  ++ ++  +   D    + V +++PGGS  AG AI+  +Q VK   
Sbjct: 34  IVFIDGEINDLTADLVVAQLLFLESQDPEKDISVYINTPGGSVTAGLAIYDTMQYVKPDV 93

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +      +A  +S +               +      +  +  
Sbjct: 94  QTICLGQAASMGALLLTAGTPGKRLALPSSRILIHQPWGGVQGQATDISIQAREMVRI-- 151

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                             +++              V++           L      T  E
Sbjct: 152 -----------------KKLLIHYFAHHTGRPEEEVAQ----------DLERDYYMTPEE 184

Query: 218 AKKVGLIDVV 227
           AK  GLID +
Sbjct: 185 AKAYGLIDDI 194


>gi|219129357|ref|XP_002184857.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403642|gb|EEC43593.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 188

 Score = 43.4 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           L+ ++  ++ +D    + + ++SPGGS  AG AI+  +Q V      +      +  A  
Sbjct: 27  LVAQLLYLANEDPEKDITLYINSPGGSVSAGMAIYDTMQYVPCDVSTVCFGMAASMGAFL 86

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     A   S +     L         ++     I  +                 
Sbjct: 87  LGAGAKGKRRALPNSRIMIHQPLGGAQGQAADIEIQAKEILFI----------------- 129

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                               ++E  + P DK     D   + T  EA + G+ID V
Sbjct: 130 -------------REVLNTYIAEYCDQPKDKIEADCDRDFFMTPEEAVEYGIIDEV 172


>gi|261405359|ref|YP_003241600.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. Y412MC10]
 gi|329923469|ref|ZP_08278950.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Paenibacillus sp. HGF5]
 gi|261281822|gb|ACX63793.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. Y412MC10]
 gi|328941269|gb|EGG37564.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Paenibacillus sp. HGF5]
          Length = 196

 Score = 43.4 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 65/194 (33%), Gaps = 33/194 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D     +I ++  ++ +D    + + ++SPGGS  AG  I+  +Q +K   
Sbjct: 29  IIFLSSAIDDDVANLVIAQLLFLAAEDPEKDISLYINSPGGSVTAGMGIYDTMQLIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A E S V     L                      
Sbjct: 89  STICVGMAASMGSLLLTAGAPGKRYALENSEVMIHQPLGGIQGQ---------------- 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            +Q+  D +  +     ++  E    P +K    +D   + +  
Sbjct: 133 --------------ASDIQIHADWIIKTRQKLNQIYVERTGQPLEKIERDTDRDFFMSAE 178

Query: 217 EAKKVGLIDVVGGQ 230
           EAK  G+ID V   
Sbjct: 179 EAKAYGIIDDVLSS 192


>gi|253796902|gb|ACT35706.1| capsid protein [Wolbachia phage WO]
 gi|253796904|gb|ACT35707.1| capsid protein [Wolbachia phage WO]
 gi|253796906|gb|ACT35708.1| capsid protein [Wolbachia phage WO]
          Length = 141

 Score = 43.4 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   +  ++++ +Q  VD  Y  FV+L++ +R +  +K      G  + G +A ++GL D
Sbjct: 1   PHEPMTSESLESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59

Query: 226 VVGGQEEVWQS 236
            V    E    
Sbjct: 60  GVTTFFEFINK 70


>gi|15892669|ref|NP_360383.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia conorii
           str. Malish 7]
 gi|15619841|gb|AAL03284.1| ATP-dependent clp protease proteolytic subunit [Rickettsia conorii
           str. Malish 7]
          Length = 216

 Score = 43.4 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 29/187 (15%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  ++    + + ++SPGG   AG AI+  +Q +K +   +      A S G 
Sbjct: 59  IVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQ--ACSMGS 116

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L+ C     +                             I+      +K +       + 
Sbjct: 117 LLLCGGEKGMR-----YSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSK 171

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
              Q ++ +  S                             +  EAKK GL+D +    +
Sbjct: 172 HTEQELKHIEKSMERDN----------------------FMSPEEAKKFGLVDNIMSSRD 209

Query: 233 VWQSLYA 239
               L  
Sbjct: 210 AMALLAK 216


>gi|71066496|ref|YP_265223.1| ATP-dependent Clp protease proteolytic subunit [Psychrobacter
           arcticus 273-4]
 gi|110816464|sp|Q4FQB9|CLPP_PSYA2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|71039481|gb|AAZ19789.1| ATP-dependent Clp protease proteolytic subunit ClpP [Psychrobacter
           arcticus 273-4]
          Length = 225

 Score = 43.4 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG AIF  +  +K   
Sbjct: 57  VIFLTGQVEDHMANLIVAQLLFLEAENPDKDIHLYINSPGGSVSAGLAIFDTMNFIKPEV 116

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +       A   + V               ++           
Sbjct: 117 STICMGGAYSMGSFLLAAGQKGKRYALANARVMIHQPSGGAQGQATDIEINARE------ 170

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
                                   +  +      +++E      +K     +   W    
Sbjct: 171 ------------------------ILKTRARLNEILAERTGQSVEKIEKDVERDYWLDAK 206

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 207 EAKEYGLIDEV 217


>gi|238754235|ref|ZP_04615592.1| ATP-dependent Clp protease proteolytic subunit [Yersinia ruckeri
           ATCC 29473]
 gi|238707482|gb|EEP99842.1| ATP-dependent Clp protease proteolytic subunit [Yersinia ruckeri
           ATCC 29473]
          Length = 194

 Score = 43.4 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 64/196 (32%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 29  IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +      ++           
Sbjct: 89  STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHARE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L+++    P ++        R  +  
Sbjct: 143 ------------------------ILKVKSRMNELMAKHTGKPLEEIERDTERDRFLSAE 178

Query: 217 EAKKVGLIDVVGGQEE 232
           E+ K GL+D +  + +
Sbjct: 179 ESVKYGLVDDIFNRRD 194


>gi|223994545|ref|XP_002286956.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220978271|gb|EED96597.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 260

 Score = 43.4 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 67/196 (34%), Gaps = 35/196 (17%)

Query: 35  SPHVARI--AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
              +  +   +  ++ +   L+ ++  ++ +D    + + ++SPGGS  AG AI+  +Q 
Sbjct: 79  KDRILLLGTDVNDEVANV--LVAQLLYLANEDPEKDITLYINSPGGSVSAGLAIYDTMQF 136

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           +      +      +  A  L + A     +   + +     L         ++     I
Sbjct: 137 IPCDVQTVCFGMAASMGAFLLGAGAPGKRKSLPNARIMIHQPLGGAQGQAADIEIQAKEI 196

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
             VK+   K                               ++E  + P +K    +D   
Sbjct: 197 LFVKACLNKY------------------------------IAEYCDQPVEKIEEDTDRDF 226

Query: 213 W-TGAEAKKVGLIDVV 227
           + T  EA+  G+ID V
Sbjct: 227 FMTPYEAQDYGIIDEV 242


>gi|156741459|ref|YP_001431588.1| endopeptidase Clp [Roseiflexus castenholzii DSM 13941]
 gi|156232787|gb|ABU57570.1| Endopeptidase Clp [Roseiflexus castenholzii DSM 13941]
          Length = 219

 Score = 43.4 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 65/193 (33%), Gaps = 33/193 (17%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            I  QI +   ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q ++     + 
Sbjct: 52  PIEDQIANL--IVAQLLFLEHEDPDRDIWLYINSPGGSITAGLAIYDTMQVIRPDVATVC 109

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                + +   L   A     +   S                       +I    +    
Sbjct: 110 VGMAGSMATPILAGGAKGKRYSLPHS-----------------------TIHMHPAGGGA 146

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKK 220
              +P  E+  +        +         L+++    P ++              +AK+
Sbjct: 147 RGYAPDVEIMARE-------LLREQQLIRELLAKDTGQPLERIARDFDRDLFMDPQQAKE 199

Query: 221 VGLIDVVGGQEEV 233
            G+ID +  +E++
Sbjct: 200 YGIIDEILTREDL 212


>gi|110633884|ref|YP_674092.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mesorhizobium
           sp. BNC1]
 gi|116243115|sp|Q11I48|CLPP2_MESSB RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|110284868|gb|ABG62927.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chelativorans
           sp. BNC1]
          Length = 208

 Score = 43.4 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ++D+    +  ++  +  ++    +   ++SPGG   +G AI+  +Q +K   
Sbjct: 33  IIFLNGQVDDNSAALVCAQMLHLEAENPKKEIAFYINSPGGVVSSGFAIYDTMQFIKCPV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                           +   +   + +   + G  G+    P     L +     +    
Sbjct: 93  --------------ATLCLGTAASMGSFLLMAGERGMRVALPNASIILHQPLGGFQGQA- 137

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                        +         +        +RL +E      +      D   + T  
Sbjct: 138 -------------SDIERHAQNVMR--HKRRMIRLYAEHCGRAEEDVERTLDRDFFMTAE 182

Query: 217 EAKKVGLIDVV 227
           +A++ GL+D V
Sbjct: 183 DAREWGLVDHV 193


>gi|315127189|ref|YP_004069192.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas
           sp. SM9913]
 gi|315015703|gb|ADT69041.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas
           sp. SM9913]
          Length = 205

 Score = 43.4 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED+    ++ ++  +  ++    + + ++SPGGS  AG AI+  +  +K   
Sbjct: 38  IIFLTGQVEDNMANLILAQMLFLESENPEKDIFLYINSPGGSVTAGMAIYDTMNFIKPDV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A         S V     L  +       +     I S+  
Sbjct: 98  STICVGQAASMGAFLLSGGAKGKRFCLPNSRVMIHQPLGGFQGQASDFEIHAKEILSI-- 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            RL++E    P D            + +
Sbjct: 156 ----------------------------KDKLNRLMAEHTGQPLDVVSRDTDRDNFMSAS 187

Query: 217 EAKKVGLIDVV 227
           +A   G++D V
Sbjct: 188 QAVDYGIVDSV 198


>gi|238060619|ref|ZP_04605328.1| endopeptidase Clp [Micromonospora sp. ATCC 39149]
 gi|237882430|gb|EEP71258.1| endopeptidase Clp [Micromonospora sp. ATCC 39149]
          Length = 213

 Score = 43.4 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 57/178 (32%), Gaps = 31/178 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +  ++  ++ +D    + + ++SPGGS Y+G AI+  +Q + N    +     MAAS G 
Sbjct: 53  ICAQLLLLAAEDPDRDIFLWINSPGGSVYSGMAIYDTMQYIDNDVSTVA--MGMAASMGQ 110

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L+ CA                           +                           
Sbjct: 111 LLLCAGTKGKR-----YALPHARIMMHQPSGGMGG-----------------------TA 142

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGG 229
             + +  + +  +   F   V+        +    SD  R +T  EA   G ID V  
Sbjct: 143 SDIAIQAEQMLYTKRMFQERVAFHTGQTQAQIEADSDRDRWFTAQEAMDYGFIDKVIT 200


>gi|21241838|ref|NP_641420.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|58580656|ref|YP_199672.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|78046637|ref|YP_362812.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|84622589|ref|YP_449961.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
 gi|166710928|ref|ZP_02242135.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
           pv. oryzicola BLS256]
 gi|188578371|ref|YP_001915300.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|188992776|ref|YP_001904786.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. campestris str. B100]
 gi|289664185|ref|ZP_06485766.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. vasculorum NCPPB702]
 gi|289668776|ref|ZP_06489851.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. musacearum NCPPB4381]
 gi|294666562|ref|ZP_06731803.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|325914926|ref|ZP_08177258.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325927441|ref|ZP_08188688.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
           perforans 91-118]
 gi|25008307|sp|Q8PNI5|CLPP_XANAC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460159|sp|Q5H434|CLPP_XANOR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|90183187|sp|Q3BWQ1|CLPP_XANC5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|110816521|sp|Q2P6Z0|CLPP_XANOM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706557|sp|B0RTF7|CLPP_XANCB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706558|sp|B2SMI3|CLPP_XANOP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|21107218|gb|AAM35956.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|58425250|gb|AAW74287.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|78035067|emb|CAJ22712.1| ATP-dependent Clp protease [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|84366529|dbj|BAE67687.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
 gi|167734536|emb|CAP52746.1| ATP-dependent Clp protease [Xanthomonas campestris pv. campestris]
 gi|188522823|gb|ACD60768.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|292603706|gb|EFF47116.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|325538819|gb|EGD10483.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325542191|gb|EGD13686.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
           perforans 91-118]
          Length = 208

 Score = 43.4 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D  +  ++ ++  +  D+    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 36  LIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPGGVVTAGMAIYDTMQYIKPDV 95

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S A+    A   S V     L  +      +D     I ++  
Sbjct: 96  STICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATDIDIHAREILTL-- 153

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                             ++++      +            +  
Sbjct: 154 ----------------------------RSRLNEILAKHTGQSLETIARDTERDNFKSAV 185

Query: 217 EAKKVGLIDVV 227
           +A+  GL+D V
Sbjct: 186 DAQAYGLVDQV 196


>gi|229541478|ref|ZP_04430538.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           coagulans 36D1]
 gi|229325898|gb|EEN91573.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           coagulans 36D1]
          Length = 196

 Score = 43.4 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 65/197 (32%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  S  ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IIMLGSAIDDNVSNSIVSQLLFLEAENPEKDIYLYINSPGGSVTAGLAIYDTMQIIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +       A   S V     L         ++           
Sbjct: 89  QTICVGMAASMGSVLLTAGTKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAK------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +  +     +++S+    P +            +  
Sbjct: 142 -----------------------HILYTRAKLNKILSDHTGQPIEVIERDTDRDNFMSAE 178

Query: 217 EAKKVGLIDVVGGQEEV 233
           +AK+ GLID +  ++E+
Sbjct: 179 KAKEYGLIDHIMTKKEL 195


>gi|160945107|ref|ZP_02092333.1| hypothetical protein FAEPRAM212_02626 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442838|gb|EDP19843.1| hypothetical protein FAEPRAM212_02626 [Faecalibacterium prausnitzii
           M21/2]
          Length = 229

 Score = 43.4 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 55/176 (31%), Gaps = 26/176 (14%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +   D    + + ++SPGGS  AG AI   +Q +K     I      +  A  
Sbjct: 75  VVAQLLYLEGQDPDKDISLYINSPGGSISAGMAIHDTMQYIKCDVSTICMGMAASMGAFL 134

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L S       A   + +     L              + I +                  
Sbjct: 135 LASGTKGKRFALPNAEIMIHQPLIGGQGGGLSGQTTDIKIHA------------------ 176

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227
                  + +        R++SE    P +K           T  +AK+ GLID V
Sbjct: 177 -------EHMVYIRDKMNRMLSEYTGQPLEKIQQDTERDNYLTAQQAKEYGLIDEV 225


>gi|17231175|ref|NP_487723.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
           7120]
 gi|75909809|ref|YP_324105.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
           variabilis ATCC 29413]
 gi|21759070|sp|Q8YQX8|CLPP2_ANASP RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|17132816|dbj|BAB75382.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
           7120]
 gi|75703534|gb|ABA23210.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
           variabilis ATCC 29413]
          Length = 232

 Score = 43.4 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D+    ++ ++  +  +DS   + + ++SPGGS YAG AI+  IQ+++   
Sbjct: 55  IIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQLYINSPGGSVYAGMAIYDTIQQIRPDV 114

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +      ++   S +     L         ++     I  +  
Sbjct: 115 VTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMIHQPLGGAQGQAIDIEIQAREILYI-- 172

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                            +L++     P ++    +D   + +  
Sbjct: 173 ----------------------------KAQLNQLLANHTGQPLERIEADTDRDFFMSAE 204

Query: 217 EAKKVGLIDVV 227
           EAK  GLID V
Sbjct: 205 EAKNYGLIDQV 215


>gi|316967772|gb|EFV52155.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Trichinella
           spiralis]
          Length = 892

 Score = 43.4 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 60/211 (28%), Gaps = 33/211 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D  S  +I ++  +        + + ++SPGGS  AG  I+  +Q +K R 
Sbjct: 46  IICVMGPITDELSSLVIAQLLFLQSKSLTKPVHMYINSPGGSVTAGLGIYDTMQYIKPRI 105

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
            + T     A S   L+  +                                  I     
Sbjct: 106 LIATWCIGQACSMASLLLASGTEGYRN-----CLPNARVMIHQPSGQAVGQATDIMIQAE 160

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
             +K +                             V  ++         +      +  +
Sbjct: 161 EIIKLK----------------------RQINKLYVKHTKKPYNVIEEAMERDLFMSPED 198

Query: 218 AKKVGLIDVV----GGQEEVWQSLYALGVDQ 244
           A + GLID +     G + ++  L     ++
Sbjct: 199 AAEFGLIDKIVNLGAGFDTLFFRLRKKYKEK 229


>gi|226529931|ref|NP_001141255.1| hypothetical protein LOC100273342 [Zea mays]
 gi|194703568|gb|ACF85868.1| unknown [Zea mays]
          Length = 304

 Score = 43.4 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 56/165 (33%), Gaps = 7/165 (4%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++    + + ++SPGG   AG AI+  +Q ++   
Sbjct: 103 IVCINGPIADDTASLVVAQLLFLESENPLKPVHLYINSPGGVVTAGLAIYDTMQYIRCPV 162

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV----LFQYPYVKPFLDKLGVSIK 153
             +      +  +  L + A     A   + V           Q   +     ++     
Sbjct: 163 TTLCIGQAASMGSLLLAAGAPGERRALPNARVMIHQPSGGAQGQATDIAIQAKEILKLRD 222

Query: 154 SVKSSPMKAEPSPFSEVNP-KAVQMMQDVVDSSYHWFVRLVSESR 197
            +     K    P  ++       +  D  ++     +  V E+R
Sbjct: 223 RLNKIYQKHTRQPIDKIEQCMERDLFMDPDEARDWGLIDEVIENR 267


>gi|164686707|ref|ZP_02210735.1| hypothetical protein CLOBAR_00302 [Clostridium bartlettii DSM
           16795]
 gi|164604097|gb|EDQ97562.1| hypothetical protein CLOBAR_00302 [Clostridium bartlettii DSM
           16795]
          Length = 193

 Score = 43.4 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  ++ D+    ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IIFLSDEVNDTTASLVVAQLLFLEAEDPDKDIHLYINSPGGSVTAGMAIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   S +     L         ++           
Sbjct: 89  STICIGMAASMGAFLLNAGAKGKRFALPNSEIMIHQPLGGAKGQATDIE----------- 137

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                              +    +        +++SE    P +K           +  
Sbjct: 138 -------------------IHAKWILKIKERLNKILSERTGQPIEKIQEDTERDNFMSAQ 178

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 179 EAKEYGLIDEV 189


>gi|227431752|ref|ZP_03913779.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352435|gb|EEJ42634.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 235

 Score = 43.4 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 85/243 (34%), Gaps = 41/243 (16%)

Query: 33  DNSPHVARIAIRGQIEDSQELIER------IERISRDDSATALIVSLSSPGGSAYAGEAI 86
             + +VA+I I G I   +   E        + +      + + +S++S GGS + G AI
Sbjct: 8   KATNNVAQIDIFGDIVSEKWFDEETSATSFRDALKELGDVSTINLSINSGGGSVFDGIAI 67

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
           +  ++  K        +  +AAS   +I+ A + I     S++    V   +   +   +
Sbjct: 68  YNMLKSHKATVN--VYIEGLAASIASVIAMAGDTITMRSGSMI---MVHMPWTLSQGNAE 122

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
           ++  +  ++                           + +    V + SE   I  D    
Sbjct: 123 EMRKTADTL---------------------------EKTGDSIVDIYSERTGISSDDIRN 155

Query: 207 LSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYA--LGVDQSIRKIKDWNPPKNYWFCDL 263
           + +   W +  EA + G    +  +E V  S+    LG   ++ K       K     D 
Sbjct: 156 IMNDETWLSAEEAVEQGWATKLDKKEAVMNSVPKEILGRFSNVPKNVLARVEKKTLSQDR 215

Query: 264 KNL 266
            +L
Sbjct: 216 LDL 218


>gi|169831635|ref|YP_001717617.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638479|gb|ACA59985.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 198

 Score = 43.4 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 64/195 (32%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G IED  +  +I ++  +  +D    + + ++SPGG   +G AI+  +Q ++   
Sbjct: 30  IVFIGGPIEDHVANLIIAQLLFLEAEDPDKDIHLYINSPGGLVTSGMAIYDTMQYIRPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +       A   + +     L         +D           
Sbjct: 90  STICLGQAASFGAFLLAAGTPGKRFALPYARIMMHQPLGGVQGQATEIDIHARE------ 143

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +  +      L+++    P +K    ++   + +  
Sbjct: 144 ------------------------ILRTKRVLNELLAKHTGQPVEKIERDTERDFFMSPE 179

Query: 217 EAKKVGLIDVVGGQE 231
           +A++ G+ID V    
Sbjct: 180 QAREYGIIDEVITVR 194


>gi|289191994|ref|YP_003457935.1| protein of unknown function DUF114 [Methanocaldococcus sp.
           FS406-22]
 gi|288938444|gb|ADC69199.1| protein of unknown function DUF114 [Methanocaldococcus sp.
           FS406-22]
          Length = 278

 Score = 43.4 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 5/151 (3%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            IEDS+E++  I     D     +I    +PGG A A E I  A+++ K +  VI   + 
Sbjct: 67  TIEDSEEILRAIRLTPEDMPIDLII---HTPGGLALASEQIALALKEHKAKTTVIIPHYA 123

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           M+   G LI+ A++ I+  + +++G +            L+      + V    +     
Sbjct: 124 MSG--GSLIALAADEIIMDKNAVMGPVDPQIGQYPAASILEAYYRKGEKVDDETLILVDI 181

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
               +      + + + D       + +++ 
Sbjct: 182 SKKAIKQMEEFVYELLKDKYGDEKAKEIAKK 212


>gi|238650581|ref|YP_002916433.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           peacockii str. Rustic]
 gi|259585964|sp|C4K1D4|CLPP_RICPU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|238624679|gb|ACR47385.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           peacockii str. Rustic]
          Length = 201

 Score = 43.4 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 29/187 (15%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  ++    + + ++SPGG   AG AI+  +Q +K +   +      A S G 
Sbjct: 44  IVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQ--ACSMGS 101

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L+ C     +                             I+      +K +       + 
Sbjct: 102 LLLCGGEKGMR-----YSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSK 156

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
              Q ++ +  S                             +  EAKK GL+D +    +
Sbjct: 157 HTEQELKHIEKSMERDN----------------------FMSPEEAKKFGLVDNIMSSRD 194

Query: 233 VWQSLYA 239
               L  
Sbjct: 195 AMTLLAK 201


>gi|145596011|ref|YP_001160308.1| endopeptidase Clp [Salinispora tropica CNB-440]
 gi|145305348|gb|ABP55930.1| Endopeptidase Clp [Salinispora tropica CNB-440]
          Length = 213

 Score = 43.4 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 58/178 (32%), Gaps = 31/178 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +  ++  ++ +D    + + ++SPGGS Y+G AI+  +Q + N    +     MAAS G 
Sbjct: 53  ICAQLLLLAAEDPDRDINLWINSPGGSVYSGMAIYDTMQFIDNDVSTVA--MGMAASMGQ 110

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L+ CA                           +                           
Sbjct: 111 LLLCAGTKGKR-----YALPHARIMMHQPSGGMGG-----------------------TA 142

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGG 229
             + +  + +  +   F   V+        +    SD  R +T  EA + G ID V  
Sbjct: 143 SDIAIQAEQMLYTKRMFQERVAFHTGQSQAQIEADSDRDRWFTAQEAMEYGFIDKVIT 200


>gi|254441469|ref|ZP_05054962.1| Clp protease [Octadecabacter antarcticus 307]
 gi|198251547|gb|EDY75862.1| Clp protease [Octadecabacter antarcticus 307]
          Length = 209

 Score = 43.1 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 68/191 (35%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D     ++ ++  +  ++    + + ++SPGG+ ++G +I+  +Q ++ + 
Sbjct: 37  IIFVNGPIHDGMSQLVVAQLLHLEAENPKKEISMYINSPGGAVHSGMSIYDTMQYIRPKV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                           + C     + +  ++ G  G+ F  P  +  + +     +    
Sbjct: 97  ST--------------LICGMAASMGSVIAVGGEKGMRFSLPNSEIMVHQPSGGSQG--- 139

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            + +    ++ +   F +L  +     +       D   W T  
Sbjct: 140 -------------KASDMLITARHIEQTRERFYKLYMKHTGQTHKSVEKALDRDTWMTPE 186

Query: 217 EAKKVGLIDVV 227
           EAK+ G +D +
Sbjct: 187 EAKEWGHLDEI 197


>gi|258514515|ref|YP_003190737.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778220|gb|ACV62114.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 194

 Score = 43.1 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 64/194 (32%), Gaps = 33/194 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G IED     +I ++  +  +D    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 30  IIFIGGPIEDYTANLIIAQLLFLEAEDPEKDIHLYINSPGGVVTAGMAIYDTMQYIKPPV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + +                            
Sbjct: 90  STICLGQAASMGSFLLAAGAPGKRFALPYARIMIHQPSGGMQGQ---------------- 133

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            + +    +        +L+S+    P DK    S+   + +  
Sbjct: 134 --------------ATDIGIHAKEILRMKEILNKLLSKHTKQPLDKITRDSERDFFMSAE 179

Query: 217 EAKKVGLIDVVGGQ 230
           +AK+ G+ID +  +
Sbjct: 180 DAKEYGIIDQIVTR 193


>gi|220910121|ref|YP_002485432.1| hypothetical protein Cyan7425_4766 [Cyanothece sp. PCC 7425]
 gi|219866732|gb|ACL47071.1| protein of unknown function DUF114 [Cyanothece sp. PCC 7425]
          Length = 296

 Score = 43.1 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 73/182 (40%), Gaps = 14/182 (7%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS++++  I     D     ++    +PGG   A E I RA+ +   +  V+   + M
Sbjct: 69  IEDSEQVLRAIRLTPPDVPIDLIL---HTPGGLVLATEQIARALIRHPAKVTVMVPHYAM 125

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           +   G +++ A++ I+    +++G +            L  +           +  +   
Sbjct: 126 SG--GTMLALAADEIMMDANAVLGPVDPQLGNYPAASILKVVEDKP----IGEIDDQTLI 179

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-----WTGAEAKKV 221
            ++++ KA++ +Q  V +       +   +          L+ GR+      T  EA ++
Sbjct: 180 MADLSRKAMRQVQRFVRTLLEDKNPVQKVAPEHIDGIIEALTTGRVTHDYPITVEEATEL 239

Query: 222 GL 223
           GL
Sbjct: 240 GL 241


>gi|156935010|ref|YP_001438926.1| hypothetical protein ESA_02861 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533264|gb|ABU78090.1| hypothetical protein ESA_02861 [Cronobacter sakazakii ATCC BAA-894]
          Length = 194

 Score = 43.1 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED     ++ ++  +  ++    + + ++SPGG   AG +I+  +Q ++   
Sbjct: 29  IIFLTGQVEDQMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIQPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +           S V     L  Y      ++           
Sbjct: 89  STICMGQAASMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L+++    P ++        R  +  
Sbjct: 143 ------------------------ILKVKARMNELMAQHTGQPLEQIERDTERDRFLSAG 178

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 179 EAVEYGLVDSIMT 191


>gi|77462189|ref|YP_351693.1| peptidase [Rhodobacter sphaeroides 2.4.1]
 gi|77386607|gb|ABA77792.1| probable peptidase [Rhodobacter sphaeroides 2.4.1]
          Length = 319

 Score = 43.1 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 76/223 (34%), Gaps = 24/223 (10%)

Query: 39  ARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           A + +RG +  +               L E +  ++  + A A+++ + SPGG     EA
Sbjct: 75  AVVPVRGILTPNMAQYERWFGWATYHGLAETLAHLAASEDAAAIVLEIDSPGGLVCGIEA 134

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
              AI      KPV   V  +AASA Y ++  ++ IV    ++ GS   +         +
Sbjct: 135 AAEAIATAAAVKPVHALVSPLAASAAYWLASQASEIVMTPGAVAGS---IGIALTAAAHV 191

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204
                  +  + S   A               +Q  +D +   F   VS  R IP  +  
Sbjct: 192 QPGANGAQIFEMSSRHARAKRPDASTEAGRAELQRSLDEAEAAFHAAVSTGRAIPAAELA 251

Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                       G  +    A + GL D    +   +  L A 
Sbjct: 252 ARLSVTDDPQDGGATFRAPAAIRRGLADRSETRAAFYARLTAR 294


>gi|323359781|ref|YP_004226177.1| protease subunit of ATP-dependent Clp protease [Microbacterium
           testaceum StLB037]
 gi|323276152|dbj|BAJ76297.1| protease subunit of ATP-dependent Clp protease [Microbacterium
           testaceum StLB037]
          Length = 220

 Score = 43.1 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 58/183 (31%), Gaps = 29/183 (15%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    +I+ ++SPGGS  A  AI+  +Q V  +   +      +
Sbjct: 55  ASADDVMAQLLVLESQDPDRDIIMYINSPGGSFTAMTAIYDTMQYVSPQIQTVVLGQAAS 114

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A++  L + A    +A   + +                D    + + +            
Sbjct: 115 AASVLLAAGAPGKRLALPNARILIHQPAMGEAGHGQASDIEIQAAEIL------------ 162

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226
                               W    ++        K    +   +I +  EA + G++D 
Sbjct: 163 ----------------RMRTWLEETMARHTGQDAAKVNKDIDRDKILSSQEAMEYGIVDQ 206

Query: 227 VGG 229
           V  
Sbjct: 207 VLT 209


>gi|207091734|ref|ZP_03239521.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 194

 Score = 43.1 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 61/191 (31%), Gaps = 34/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I DS    ++ ++  +  +D    + + ++SPGG   +G +I+  +  ++   
Sbjct: 29  IVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     +   S +     L         ++ +   I     
Sbjct: 89  STICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEI----- 143

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                           +  +  +     ++    +D   + +  
Sbjct: 144 --------------------------LRLKGLMNSILANSGQSLEQIAKDTDRDFYMSAK 177

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 178 EAKEYGLIDKV 188


>gi|50954515|ref|YP_061803.1| ATP-dependent Clp protease proteolytic subunit [Leifsonia xyli
           subsp. xyli str. CTCB07]
 gi|67460474|sp|Q6AFZ7|CLPP2_LEIXX RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|50950997|gb|AAT88698.1| ATP-dependent Clp protease proteolytic subunit [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 223

 Score = 43.1 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 59/192 (30%), Gaps = 27/192 (14%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    +++ ++SPGGS  A  AI+  +Q V+ +   +      +
Sbjct: 59  ASADDIMAQLLVLESQDPDRDIVMYINSPGGSFTAMTAIYDTMQYVRPQIQTVVLGQAAS 118

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A    + A    +A   + +                D L  S +              
Sbjct: 119 AAAVLTAAGAPGKRLALPNARILIHQPAVGEAGHGQASDILIQSNEI------------- 165

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
                                   LV  S          +    I +  EA K GLID V
Sbjct: 166 --------------NRMRAWLEETLVKHSSRTLEQVNKDIERDNILSATEALKYGLIDQV 211

Query: 228 GGQEEVWQSLYA 239
               +   +L  
Sbjct: 212 LTSRKTLPALVK 223


>gi|256821432|ref|YP_003145395.1| hypothetical protein Kkor_0206 [Kangiella koreensis DSM 16069]
 gi|256794971|gb|ACV25627.1| protein of unknown function DUF107 [Kangiella koreensis DSM 16069]
          Length = 476

 Score = 43.1 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 83/229 (36%), Gaps = 11/229 (4%)

Query: 10  TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERISRDDSAT 67
             Y+ LS + L        S   ++     ++ + G +  +    L+E IE  +  D   
Sbjct: 4   ALYIALSFLLLCFSAQQLHSAETNSGKRAMQLTLDGSVNPATAHFLVENIEEAAAQD-YQ 62

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV--HEMAASAGYLISCASNIIVAAE 125
            +I+ +++PGG   A   I RAI                  A++  Y++  +    +A  
Sbjct: 63  LIIIKMNTPGGLDLAMRDIIRAILSSPVPVATYVYPPGSRAASAGTYILYASHVSAMAPA 122

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA-----VQMMQD 180
           T+L  +  V           ++   + +  +      +       +P          M+ 
Sbjct: 123 TNLGAATPVSIGGMPSPDQPNQSEQNKEPNQDGADSEQSKDQPAQSPSQSAPSNKSAMEK 182

Query: 181 VVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVG 228
            V +    ++R ++       D     + +G   + +EA ++G+ID++ 
Sbjct: 183 KVINDAEAYLRSLAHYHGRNIDWVKNAVREGESLSSSEALEIGVIDLIA 231


>gi|271499597|ref|YP_003332622.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dickeya
           dadantii Ech586]
 gi|270343152|gb|ACZ75917.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dickeya
           dadantii Ech586]
          Length = 207

 Score = 43.1 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 60/196 (30%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED     ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDYMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +           S V     L  +      ++           
Sbjct: 102 STICMGQAASMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L+++      D         R  + A
Sbjct: 156 ------------------------ILKVKARMNELMAKHTGQSLDVIERDTERDRFLSAA 191

Query: 217 EAKKVGLIDVVGGQEE 232
           EA + GL+D V    E
Sbjct: 192 EAVEYGLVDSVLTHRE 207


>gi|213019666|ref|ZP_03335471.1| minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994707|gb|EEB55350.1| minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 145

 Score = 43.1 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 13/110 (11%)

Query: 31  VEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPG 77
           V  N    A IAI G              +   +++ E IE    +     +++ + SPG
Sbjct: 27  VNQNIEKTAVIAIHGILTKKPGAFDDFLGMTSYEKIQEEIEEALSNKDIETILLDIDSPG 86

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           G       +   I + + +K +I   ++ A SA Y I+ ++  +  + TS
Sbjct: 87  GEVNGIFDLADFIYESRAKKRIIAIANDDAYSAAYAIASSAEKVFVSRTS 136


>gi|37527729|ref|NP_931074.1| ATP-dependent Clp protease proteolytic subunit [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|60389709|sp|Q7N0L3|CLPP_PHOLL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|36787165|emb|CAE16241.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease,
           heat shock protein F21.5 (Endopeptidase Clp)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 207

 Score = 43.1 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 63/196 (32%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  +  ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  IIFLTGQVEDHMANLVAAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A    +    S V     L  +      ++           
Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAQE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +         L+++    P ++        R  +  
Sbjct: 156 ------------------------ILKVKSRMNELMAKHTGRPIEEIAKDTERDRFLSAD 191

Query: 217 EAKKVGLIDVVGGQEE 232
           EA + GL+D +    +
Sbjct: 192 EAVEYGLVDKIFTHRD 207


>gi|315645729|ref|ZP_07898853.1| hypothetical protein PVOR_09635 [Paenibacillus vortex V453]
 gi|315279207|gb|EFU42517.1| hypothetical protein PVOR_09635 [Paenibacillus vortex V453]
          Length = 196

 Score = 43.1 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 64/194 (32%), Gaps = 33/194 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D     +I ++  ++ +D    + + ++SPGGS  AG  I+  +Q +K   
Sbjct: 29  IIFLSSAIDDDVANLVIAQLLFLAAEDPEKDISLYINSPGGSVTAGMGIYDTMQLIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A E S V     L     ++     + +    +  
Sbjct: 89  STICVGMAASMGSLLLTAGAPGKRYALENSEVMIHQPLG---GIQGQASDIQIHADWIIK 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
           +  K                                 E    P +K    +D   + +  
Sbjct: 146 TRHKLNQIYV---------------------------ERTGQPLEKIERDTDRDFFMSAE 178

Query: 217 EAKKVGLIDVVGGQ 230
           EAK  G+ID V   
Sbjct: 179 EAKAYGIIDDVLSS 192


>gi|295100804|emb|CBK98349.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Faecalibacterium prausnitzii L2-6]
          Length = 199

 Score = 43.1 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 57/183 (31%), Gaps = 25/183 (13%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  ++ ++  +   D    + + ++SPGGS  AG AI   IQ +K     I      +
Sbjct: 39  TSASLVVAQLLYLEGQDPDKDISLYINSPGGSISAGMAIHDTIQYIKCDVSTICMGMAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L S       A   + +     L                                
Sbjct: 99  MGAFLLASGTKGKRFALPNAEIMIHQPLI------------------------AGGQGGG 134

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226
                  +++  D +  +     RL+SE    P +K           +  EAK+ GLID 
Sbjct: 135 LSGQATDIKIHADHIIRTRAKMNRLLSEYTGQPLEKVEQDTERDNFLSAQEAKEYGLIDE 194

Query: 227 VGG 229
           V  
Sbjct: 195 VIT 197


>gi|225419706|ref|ZP_03762009.1| hypothetical protein CLOSTASPAR_06044 [Clostridium asparagiforme
           DSM 15981]
 gi|225041643|gb|EEG51889.1| hypothetical protein CLOSTASPAR_06044 [Clostridium asparagiforme
           DSM 15981]
          Length = 198

 Score = 43.1 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 55/181 (30%), Gaps = 28/181 (15%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  +I  +  +   D    +   ++SPGGS  AG AI+  ++ ++     I      +
Sbjct: 39  TSASLIIAELLFLEAQDPQKDVQFYINSPGGSVTAGFAIYDTMRHIRCDVSTICIGLAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L        +A   S +           ++     + +                 
Sbjct: 99  FGAFLLAGGTRGKRLALPNSQIMIHQPAMSGRGIQGPASDILI----------------- 141

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226
                     M D +  S     R+++E+      +           +  EA + GLID 
Sbjct: 142 ----------MSDYMQKSRQRLNRILAENTGHTPLEIERDTERDNFMSAEEALEYGLIDS 191

Query: 227 V 227
           +
Sbjct: 192 I 192


>gi|312964065|ref|ZP_07778509.1| peptidase family S49 family protein [Escherichia coli 2362-75]
 gi|312291106|gb|EFR18968.1| peptidase family S49 family protein [Escherichia coli 2362-75]
          Length = 127

 Score = 43.1 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 2/115 (1%)

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
            ++AAS GY+++C ++ IV+A  ++VGSIGV+ Q P    FL    + I+   +   K  
Sbjct: 14  DKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKDIDIELHTAGQYKRT 73

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEA 218
            +   E   +  +  ++ ++ ++  F   V   R  P      ++ G  W G +A
Sbjct: 74  LTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLDIEQVATGEHWYGQQA 126


>gi|220934115|ref|YP_002513014.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995425|gb|ACL72027.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 216

 Score = 43.1 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 33/201 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I   G +ED  +  ++ ++  +  ++    + + ++SPGG+  AG AI+  +Q +K   
Sbjct: 45  VIFAVGPVEDYMANVIVAQLLFLESENPDKDISLYINSPGGAVTAGMAIYDTMQFIKPDV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L  +      +D           
Sbjct: 105 STLCIGQAASMGAVLLAGGAKGKRFCLPHSRVMIHQPLGGFQGQATDIDIHARE------ 158

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +        R+++       ++        R     
Sbjct: 159 ------------------------ILKVRAELNRILAHHTGQSIEQIEQDTERDRFLNPV 194

Query: 217 EAKKVGLIDVVGGQEEVWQSL 237
           EA + GLID V    E+ +  
Sbjct: 195 EAAEYGLIDQVLSSREMAEQA 215


>gi|167856520|ref|ZP_02479231.1| putative Clp-like protease [Haemophilus parasuis 29755]
 gi|167852352|gb|EDS23655.1| putative Clp-like protease [Haemophilus parasuis 29755]
          Length = 655

 Score = 43.1 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 66/204 (32%), Gaps = 40/204 (19%)

Query: 39  ARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           A I+I  +I      +Q+  + ++ +        + + + SPGGS + G AI+  ++   
Sbjct: 14  AEISIMDEIGGWGISAQQFAKDLKNLGD---LKHIDLHIHSPGGSVFDGIAIYNLLKNHP 70

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
             K     +  +AAS   +I+   + ++  + +++                         
Sbjct: 71  ASKT--VYIDGLAASMASVIAMVGDPVIMPKNAMMMIH------------------KPWG 110

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213
           ++    +        ++               +  +   +E      ++   +     W 
Sbjct: 111 IQGGDAEDMRKYADLLDKIE------------NTLIPAYAEKTGKSPEELAEMLKEETWL 158

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSL 237
           T  E  + G  D +    +   S+
Sbjct: 159 TAEECVEQGFADKLAEPIKAMASI 182


>gi|83951435|ref|ZP_00960167.1| Periplasmic serine protease (ClpP class) [Roseovarius nubinhibens
           ISM]
 gi|83836441|gb|EAP75738.1| Periplasmic serine protease (ClpP class) [Roseovarius nubinhibens
           ISM]
          Length = 309

 Score = 43.1 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 26/214 (12%)

Query: 35  SPHVARIAIRGQIEDSQELIER-------------IERISRDDSATALIVSLSSPGGSAY 81
           S  VA + IRG +    E++ER                I+ ++  +A ++ ++SPGG   
Sbjct: 58  SRRVAVMPIRGILTPDSEVLERYFGWATYQGIEAACAEIAANEDVSAAVLDVNSPGGMVM 117

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI-SCASNIIVAAETSLVGSIGVLFQYPY 140
             E   +A+  +   KPV   V+ MAASA Y I S AS+I +   + L     +      
Sbjct: 118 GLEGAAQAVAALAAIKPVHVLVNPMAASAAYFIASQASDITMIPGSELGSIGTMRSSVWP 177

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           VKP        +     +  K      +  +   +  +Q  +D +   F+  V+  R + 
Sbjct: 178 VKPDNWGDQWGVHLSSHARAKNP----NPTSETGLAEIQRSLDEAEAAFLDAVATGRGLD 233

Query: 201 YD--------KTLVLSDGRIWTGAEAKKVGLIDV 226
                            G ++   +A    L D 
Sbjct: 234 RAGLPKHLSVTDDEADGGAMYRTDQALARNLADG 267


>gi|327401777|ref|YP_004342616.1| hypothetical protein Arcve_1908 [Archaeoglobus veneficus SNP6]
 gi|327317285|gb|AEA47901.1| protein of unknown function DUF107 [Archaeoglobus veneficus SNP6]
          Length = 427

 Score = 43.1 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 107/294 (36%), Gaps = 53/294 (18%)

Query: 10  TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL-IERIERISRDDSATA 68
            R + +SLV   ++    +  VE     V  + I+G I +   + +    +++ + +A A
Sbjct: 2   ARMLPVSLVMFLLLSLLSAEAVEAAK--VVEVDIKGDINEGTAIQVSNAFKLAEEVNADA 59

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           +++ + +PGG   + ++I   I  +++  PVIT VH   A +    S        A  S 
Sbjct: 60  VLIVIDTPGGLVTSMKSIVTEI--LQSDIPVITYVHPPGAFSASAGSFILISGHIAAMS- 116

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
                                       +       +P + +         +   +    
Sbjct: 117 ----------------------------NGTSVGAATPITPIGAAE-----NKTINYLAN 143

Query: 189 FVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQE-EVWQSLYALGVDQSI 246
           + + ++E R  P D     +++G   T  EA + G++DV+   + E++  +    VD + 
Sbjct: 144 YAKSIAEVRGRPVDIAERFVTEGLSLTAREAYEKGVVDVIADSKGELFSKINGKEVDVNG 203

Query: 247 RKIK----------DWNPPKNYWFCDLKNLSISSL--LEDTIPLMKQTKVQGLW 288
           RKI              P K   F  L N   +S+  L     L+      G+ 
Sbjct: 204 RKIVLHFETVEIVKAEKPLKASIFEILSNPQTASILFLIGLYGLIFGLTSPGVL 257


>gi|322659269|gb|EFY55517.1| putative periplasmic protease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
          Length = 85

 Score = 43.1 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
               ++ G  W G +A + GL+D +   +EV   L       +      +   K      
Sbjct: 6   DIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLMEGREVLN----VRYMQRKKLIDRV 61

Query: 263 LKNLSISS 270
             + + S+
Sbjct: 62  TGSAAESA 69


>gi|320530213|ref|ZP_08031283.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
           artemidis F0399]
 gi|320137646|gb|EFW29558.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
           artemidis F0399]
          Length = 199

 Score = 43.1 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D+    ++ ++  +  +D    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 24  IIFLGGPIDDNVANVVVAQMLFLESEDPDKDIHLYINSPGGVVTAGLAIYDTMQYIKPDV 83

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + +     L                      
Sbjct: 84  STICIGQAASMGSILLTAGAKGKRYALPHARIMIHQPLGGAQGQST-------------- 129

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            +Q+    +         +++       DK           +  
Sbjct: 130 ----------------DIQIQAKEILRLREVGNEILARHTGQDTDKINVDTERDNFMSAE 173

Query: 217 EAKKVGLIDVV 227
           EAK  GLID V
Sbjct: 174 EAKAYGLIDEV 184


>gi|295706643|ref|YP_003599718.1| hypothetical protein BMD_4544 [Bacillus megaterium DSM 319]
 gi|294804302|gb|ADF41368.1| putative membrane protein [Bacillus megaterium DSM 319]
          Length = 443

 Score = 43.1 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 68/233 (29%), Gaps = 30/233 (12%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDS 65
           +KT +  +  + L    F   S  +    H   I +   +E+     L   IE    +D 
Sbjct: 1   MKTLFSFVCFLILATGLFPTISTADVKRVH--VIPVNKTVENGLLSFLNRSIEEA-ENDG 57

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
           A  +I+ + +PGG+  A   I +++                  S     +   +    + 
Sbjct: 58  ADLIILDIDTPGGAVDAASEIAKSL-----------------TSTPIPTAAFVDKKALSA 100

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
            + +                    +  +   +          +  +             +
Sbjct: 101 GAYIALNADQIYMTPGSTMGSAAVIDQQGNAAGKKAQSYWLSAMKSAAEQNNRNPKYAEA 160

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV-VGGQEEVWQSL 237
                 ++        +  L  ++    T  +A++VG  +  V   +++ + L
Sbjct: 161 MANTKMVI-------PELNLKGNELLTLTPKQAEQVGYSEGTVKNLDDLLRVL 206


>gi|298346364|ref|YP_003719051.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mobiluncus
           curtisii ATCC 43063]
 gi|298236425|gb|ADI67557.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mobiluncus
           curtisii ATCC 43063]
          Length = 294

 Score = 43.1 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 63/210 (30%), Gaps = 37/210 (17%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSA 80
               +   D    V  + I G I +      ++   I     +  +  + V L+SPGG  
Sbjct: 8   IPPETTNPDTQEDVRVLRINGAIAEESWLDDDVTPAIFASELNAGSGPVTVWLNSPGGDV 67

Query: 81  YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
            A   I+  +  +     V   +  +AASA  +I+ A++ +  +  S++           
Sbjct: 68  VAAARIYNML--LDYPGQVRVNIDGIAASAASVIAMAASNVAMSPVSMLMIHNPATLAMG 125

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
            K  L +    ++SV                                  +        + 
Sbjct: 126 DKTELSRALDMLESV------------------------------KDSIINAYQLKTGLS 155

Query: 201 YDKTLVLSDGRIWT-GAEAKKVGLIDVVGG 229
             K   L D   W     A ++G  D +  
Sbjct: 156 RAKLSKLMDAETWMDATAAIELGFADELLT 185


>gi|284046814|ref|YP_003397154.1| ATP-dependent Clp protease proteolytic subunit ClpP [Conexibacter
           woesei DSM 14684]
 gi|283951035|gb|ADB53779.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Conexibacter
           woesei DSM 14684]
          Length = 193

 Score = 43.1 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 59/177 (33%), Gaps = 29/177 (16%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +   D    + + ++SPGGS YAG AI+  +Q +K     I     M+  +  
Sbjct: 44  IVAQLLHLESSDPDKDISIYINSPGGSIYAGLAIYDTMQFIKPDVQTICCGIAMSMGSLL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L+  A    ++   S +        +      ++    + + +K+     E   F    P
Sbjct: 104 LMGGARGKRMSLPNSRILIHQPSAGFEGQSTDIEIH--AREIIKTRKRIDEIYAFHTGQP 161

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
           +                                 +   R +   EA + GLID V  
Sbjct: 162 EERVNH---------------------------DMERDRFFKPDEAVEYGLIDRVIT 191


>gi|238783609|ref|ZP_04627630.1| ATP-dependent Clp protease proteolytic subunit [Yersinia bercovieri
           ATCC 43970]
 gi|238715487|gb|EEQ07478.1| ATP-dependent Clp protease proteolytic subunit [Yersinia bercovieri
           ATCC 43970]
          Length = 207

 Score = 43.1 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 60/196 (30%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  +  ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  IIFLTGQVEDHMANLITAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +      ++           
Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHARE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 156 ------------------------ILKVKSRMNELMALHTGKSLEEIERDTERDRFLSAE 191

Query: 217 EAKKVGLIDVVGGQEE 232
           EA   GL+D V  + +
Sbjct: 192 EAVGYGLVDSVFTRRD 207


>gi|317495864|ref|ZP_07954227.1| Clp protease [Gemella moribillum M424]
 gi|316914041|gb|EFV35524.1| Clp protease [Gemella moribillum M424]
          Length = 212

 Score = 43.1 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 56/196 (28%), Gaps = 34/196 (17%)

Query: 40  RIAIRGQIEDSQ---ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           RI I G   + Q    +  ++  +   DS   +   ++SPGGS  AG AI+  +Q +K  
Sbjct: 28  RIIILGSDVNDQVANSITSQLLFLEAQDSEKDIYFYINSPGGSVTAGFAIYDTMQHIKCD 87

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
              I      +  A  L +       A   + V     L         ++          
Sbjct: 88  VVTICMGMAASMGAFLLAAGTIGKRYALPNAEVMIHQPLGGAQGQATEIEIAAK------ 141

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTG 215
                                    +  +     +++++                   + 
Sbjct: 142 ------------------------HILRTREKLNKILADRTGQTIKAIERDTERDNYLSA 177

Query: 216 AEAKKVGLIDVVGGQE 231
            EA   GL+D V   E
Sbjct: 178 EEACAYGLVDKVMYPE 193


>gi|148272645|ref|YP_001222206.1| ATP-dependent Clp protease proteolytic subunit [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|170781894|ref|YP_001710226.1| ATP-dependent Clp protease proteolytic subunit [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|147830575|emb|CAN01510.1| ATP-dependent protease, proteolytic subunit [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|169156462|emb|CAQ01610.1| ATP dependent Clp protease proteolytic subunit 2 [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 226

 Score = 43.1 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 60/184 (32%), Gaps = 27/184 (14%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    +++ ++SPGGS  A  AI+  +Q V  +   +      +
Sbjct: 60  ASADDVMAQLLVLESMDPDRDIVMYINSPGGSFTAMTAIYDTMQYVSPQIQTVCLGQAAS 119

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L   A    +A   +                           V         S  
Sbjct: 120 AAAVLLAGGAPGKRLALPNA--------------------------RVLIHQPATGESSG 153

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
            + +   +Q  + +   S+         +R+        +   +I    EA + GLID V
Sbjct: 154 GQASDIEIQAAEIMRMRSWLEDTLAKHTNRD-RDQINRDIERDKILGADEALEYGLIDQV 212

Query: 228 GGQE 231
               
Sbjct: 213 LTSR 216


>gi|160871940|ref|ZP_02062072.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rickettsiella
           grylli]
 gi|159120739|gb|EDP46077.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rickettsiella
           grylli]
          Length = 220

 Score = 43.1 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 62/204 (30%), Gaps = 33/204 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IED  +  +I ++  +  ++    + + ++SPGG   +G AI+  +Q +K   
Sbjct: 41  IIFVVGPIEDHMANLIIAQMLFLESENPDKDISLYINSPGGVVTSGLAIYDTMQFIKPDV 100

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +A+A  L             + +     L  Y      ++     +  V  
Sbjct: 101 STMCIGQAASAAALLLCGGTKGKRHCLPHARMMIHQPLGGYQGQATDIEIHTREMLLV-- 158

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                             ++S+      ++              
Sbjct: 159 ----------------------------RERINSIMSKHTGKNTEQILRDTDRDNFMGAQ 190

Query: 217 EAKKVGLIDVVGGQEEVWQSLYAL 240
           +A   GLID V       ++  +L
Sbjct: 191 QAIDYGLIDAVLTMRSEERARESL 214


>gi|256810842|ref|YP_003128211.1| protein of unknown function DUF114 [Methanocaldococcus fervens
           AG86]
 gi|256794042|gb|ACV24711.1| protein of unknown function DUF114 [Methanocaldococcus fervens
           AG86]
          Length = 278

 Score = 43.1 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 59/151 (39%), Gaps = 5/151 (3%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            IEDS+E++  I     D     +I    +PGG A A E I  A+++ K +  VI   + 
Sbjct: 67  TIEDSEEILRAIRLTPEDMPIDLII---HTPGGLALASEQIALALKEHKAKTTVIIPHYA 123

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           M+   G LI+ A++ I+  + +++G +            L+        V    +     
Sbjct: 124 MSG--GSLIALAADEIIMDKNAVMGPVDPQIGQYPAASILEAYYKKGDKVDDETLILVDI 181

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
               +      + + + D       + +++ 
Sbjct: 182 SKKAIRQMEEFVYELLKDKYGDEKAKEIAKK 212


>gi|187735546|ref|YP_001877658.1| Endopeptidase Clp [Akkermansia muciniphila ATCC BAA-835]
 gi|187425598|gb|ACD04877.1| Endopeptidase Clp [Akkermansia muciniphila ATCC BAA-835]
          Length = 218

 Score = 43.1 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 55/191 (28%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I   I+D     +I ++  +   D    + V ++SPGGS  AG AI+  +Q V    
Sbjct: 42  VIFIGSAIDDDVANSVIAQLLFLQMADPKKDIHVYINSPGGSVTAGLAIYDTMQFVSCDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L +           S V    V                       
Sbjct: 102 NTYCLGIAASMGSVLLAAGTPGKRFCLPNSHVMIHQVSGGAQG----------------- 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            V+     + +       ++++       +    +D   + T  
Sbjct: 145 -------------TASDVERTIGFMFNLKKRLNGILAKHTGKTEKQIEKDADRDNYMTAE 191

Query: 217 EAKKVGLIDVV 227
           EA   GL+D V
Sbjct: 192 EAVAYGLVDKV 202


>gi|190570808|ref|YP_001975166.1| minor capsid protein c (fragment) [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357080|emb|CAQ54482.1| minor capsid protein c (fragment) [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 158

 Score = 43.1 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 13/110 (11%)

Query: 31  VEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPG 77
           V  N    A IAI G              +   +++ E IE    +     +++ + SPG
Sbjct: 40  VNQNIEKTAVIAIHGILTKKPGAFDDFLGMTSYEKIQEEIEEALSNKDIETILLDIDSPG 99

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           G       +   I + + +K +I   ++ A SA Y I+ ++  +  + TS
Sbjct: 100 GEVNGIFDLADFIYESRAKKRIIAIANDDAYSAAYAIASSAEKVFVSRTS 149


>gi|300721991|ref|YP_003711271.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628488|emb|CBJ89055.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Xenorhabdus nematophila ATCC 19061]
          Length = 207

 Score = 43.1 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A         S V     L  +                   
Sbjct: 102 STICMGQACSMGSFLLAAGAEGKRFCLPNSRVMIHQPLGGFQGQ---------------- 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            +Q+    +         L+++    P DK        R  + +
Sbjct: 146 --------------ATDIQIHAQEILKVKARMNELMAKHTGQPLDKIEEDTERDRFLSAS 191

Query: 217 EAKKVGLIDVV 227
           EA   GL+D +
Sbjct: 192 EAVDYGLVDSI 202


>gi|260596809|ref|YP_003209380.1| ATP-dependent Clp protease proteolytic subunit [Cronobacter
           turicensis z3032]
 gi|260215986|emb|CBA28638.1| ATP-dependent Clp protease proteolytic subunit [Cronobacter
           turicensis z3032]
          Length = 214

 Score = 43.1 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED     ++ ++  +  ++    + + ++SPGG   AG +I+  +Q ++   
Sbjct: 49  IIFLTGQVEDQMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIQPDV 108

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +           S V     L  Y      ++           
Sbjct: 109 STICMGQAASMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 162

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L+++    P ++        R  +  
Sbjct: 163 ------------------------ILKVKARMNELMAQHTGQPLEQIERDTERDRFLSAG 198

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D +  
Sbjct: 199 EAVEYGLVDSIMT 211


>gi|115311350|sp|Q3M726|CLPP3_ANAVT RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
          Length = 214

 Score = 43.1 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D+    ++ ++  +  +DS   + + ++SPGGS YAG AI+  IQ+++   
Sbjct: 37  IIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQLYINSPGGSVYAGMAIYDTIQQIRPDV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +      ++   S +     L         ++     I  +  
Sbjct: 97  VTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMIHQPLGGAQGQAIDIEIQAREILYI-- 154

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                            +L++     P ++    +D   + +  
Sbjct: 155 ----------------------------KAQLNQLLANHTGQPLERIEADTDRDFFMSAE 186

Query: 217 EAKKVGLIDVV 227
           EAK  GLID V
Sbjct: 187 EAKNYGLIDQV 197


>gi|148657762|ref|YP_001277967.1| endopeptidase Clp [Roseiflexus sp. RS-1]
 gi|148569872|gb|ABQ92017.1| Endopeptidase Clp [Roseiflexus sp. RS-1]
          Length = 219

 Score = 43.1 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 65/193 (33%), Gaps = 33/193 (17%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            I  QI +   ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q ++     + 
Sbjct: 52  PIDDQIANL--IVAQLLFLEHEDPDRDIWLYINSPGGSITAGLAIYDTMQVIRPDVATVC 109

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                + +   L   A     +   S                       +I    +    
Sbjct: 110 VGMAGSMATPILAGGAKGKRYSLPHS-----------------------TIHMHPAGGGA 146

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKK 220
              +P  E+  +        +         L+++    P ++              +AK+
Sbjct: 147 RGYAPDVEIMARE-------LLREQQLIRELLAKDTGQPLERIARDFDRDLFMDPQQAKE 199

Query: 221 VGLIDVVGGQEEV 233
            G+ID +  +E++
Sbjct: 200 YGIIDEILTREDL 212


>gi|254195020|ref|ZP_04901449.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei S13]
 gi|254195945|ref|ZP_04902371.1| Clp protease [Burkholderia pseudomallei S13]
 gi|254197217|ref|ZP_04903639.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei S13]
 gi|169651768|gb|EDS84461.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei S13]
 gi|169652690|gb|EDS85383.1| Clp protease [Burkholderia pseudomallei S13]
 gi|169653958|gb|EDS86651.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei S13]
          Length = 366

 Score = 43.1 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 78/218 (35%), Gaps = 43/218 (19%)

Query: 30  HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
             +     VA I I   I     D+Q  + +++  +    A+++ V+++S GG  +   A
Sbjct: 13  QAQAGGGKVAEIRIYSDIGFWGTDAQNFVSQLDAAAA--DASSITVAINSMGGDVFDAFA 70

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I+ A+++   +      V  +AASA  L+  A + I   E +L+                
Sbjct: 71  IYNALRRYAGKVK--GRVDGIAASAASLVLMACDEIEMPENALLMIHH------------ 116

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
                   +V +   K        ++  +  ++   V            +   +  D   
Sbjct: 117 ------PHTVAAGESKDLRRVAELLDNASAGILAAYV------------QRSGLSEDDVR 158

Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
            + D   W T A+AK+ G  DV+    E    L A   
Sbjct: 159 AMMDAETWLTAAQAKEKGFCDVI----EAPVKLAASAG 192


>gi|197302444|ref|ZP_03167499.1| hypothetical protein RUMLAC_01172 [Ruminococcus lactaris ATCC
           29176]
 gi|197298342|gb|EDY32887.1| hypothetical protein RUMLAC_01172 [Ruminococcus lactaris ATCC
           29176]
          Length = 193

 Score = 43.1 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 31/181 (17%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  ++ ++  +  DD    + + ++SPGGS  AG AI+  +Q +K     +      +
Sbjct: 39  VSASVIVAQLLFLEADDPDKDIQLYINSPGGSVTAGMAIYDTMQYIKCDVSTVCIGMAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L   A     A   + +     L                                
Sbjct: 99  MGAFLLSGGAKGKRFALPNAEIMIHQPLGGAQGQ-------------------------- 132

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226
                  +Q+  + +  +      +++ +   P +            + AEAK+ GLID 
Sbjct: 133 ----ATEIQIAAEHILRTRKTLNSILAANTGKPLEVIQTDTERDNFMSAAEAKEYGLIDE 188

Query: 227 V 227
           V
Sbjct: 189 V 189


>gi|157961398|ref|YP_001501432.1| hypothetical protein Spea_1572 [Shewanella pealeana ATCC 700345]
 gi|157846398|gb|ABV86897.1| protein of unknown function DUF107 [Shewanella pealeana ATCC
           700345]
          Length = 498

 Score = 43.1 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 78/229 (34%), Gaps = 24/229 (10%)

Query: 23  VYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISR-----DDSATALIVSLSS 75
              +      +  P V  +   G I    S+ L   IE+ +      +     +++ + +
Sbjct: 29  YASTAQEPSIETRPQVLVLEFEGAIGPATSEYLTHGIEQANASAALGNGEIELIVIVMDT 88

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           PGG   +   I + I          +      AASAG  I  A +I   A+ + +G+   
Sbjct: 89  PGGLVSSLRDINQTILNSSIPIACLVAPPGARAASAGTYILYACHIAAMADATTLGAATP 148

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           +   P   P             +   K +     E  P     M+  + +    ++R ++
Sbjct: 149 VSIGPGSAP-------------TPAPKPDQKDDEEPAPATPSAMEKKILNDAIAYIRALA 195

Query: 195 ESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           + R          + +    T  EA ++ +I+++    +  + +  L  
Sbjct: 196 QLRGRNEQWAELAVKEAATLTAKEALEMNVINLI--SPDAPRLVAELTG 242


>gi|114767020|ref|ZP_01445928.1| Protease subunit of ATP-dependent Clp protease [Pelagibaca
           bermudensis HTCC2601]
 gi|114540804|gb|EAU43868.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp.
           HTCC2601]
          Length = 210

 Score = 43.1 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 20/202 (9%), Positives = 58/202 (28%), Gaps = 33/202 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++ +  + + ++SPGG   +G +I+  +Q ++ + 
Sbjct: 38  IIFVSGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIRPKV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +  + +  +   S +        Y                   
Sbjct: 98  STLVIGQAASMGSLLLTAGEAGMRFSLPNSRIMVHQPSGGYQGQ---------------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            + +  +           +         +     L         
Sbjct: 142 --------------ATDIMIHAEETLKLKRRLNEIYVRHTGQTLENVEAALERDNFMAPE 187

Query: 217 EAKKVGLIDVVGGQEEVWQSLY 238
           +AK+ GLID +       +   
Sbjct: 188 DAKEWGLIDEIVESRGAAEEAK 209


>gi|116253257|ref|YP_769095.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|116243122|sp|Q1MDH4|CLPP3_RHIL3 RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|115257905|emb|CAK09003.1| putative ATP-dependent Clp protease [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 194

 Score = 43.1 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 63/196 (32%), Gaps = 38/196 (19%)

Query: 41  IAIRGQIED--SQELIERI--ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           I I G I    +Q++  ++     + D+      + ++SPGG   +G++I   I+ +K +
Sbjct: 29  IFIYGPINQELAQKVCSQLVALAAASDEDIR---IYVNSPGGHVESGDSIHDMIKFIKPK 85

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
             +I      +A A   ++      +    +             +   ++          
Sbjct: 86  VWMIGTGWVASAGALIYVATPKERRLCLPNTRFLLHQPSGGTRGMASDIEI--------- 136

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215
                                    +        R+++ +   P DK    +D   W + 
Sbjct: 137 ---------------------QAREIIKMNERLNRIMAAATGQPLDKIDKDTDRDYWLSA 175

Query: 216 AEAKKVGLIDVVGGQE 231
            EAK  GL+  +   +
Sbjct: 176 EEAKDYGLVSRIVTSQ 191


>gi|56478265|ref|YP_159854.1| ATP-dependent Clp protease proteolytic subunit [Aromatoleum
           aromaticum EbN1]
 gi|67460188|sp|Q5P161|CLPP_AZOSE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56314308|emb|CAI08953.1| ATP-dependent Clp protease proteolytic subunit [Aromatoleum
           aromaticum EbN1]
          Length = 212

 Score = 43.1 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 62/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++    +   ++SPGGS  +G AI+  +Q +K   
Sbjct: 45  VIFLVGPVNDVTANLIVAQLLFLESENPDKDVYFYINSPGGSVSSGMAIYDTMQFIKPSV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +           S V     L  +      ++     I  +  
Sbjct: 105 STLCIGQAASMGSFLLAAGEKGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAREILGI-- 162

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216
                                             ++++    P ++    +D  R  + A
Sbjct: 163 ----------------------------RAKLNEMLAKHTGQPIEQIEKDTDRDRFMSAA 194

Query: 217 EAKKVGLIDVVGG 229
           +A + G++D V  
Sbjct: 195 DAVEYGIVDKVLT 207


>gi|112823618|gb|ABI25707.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haemophilus
           somnus 129PT]
          Length = 188

 Score = 43.1 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED     ++ ++  +  +D A  + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 24  VIFLTGEVEDRMANLIVAQLLFLEAEDPAKDINIYINSPGGSVTAGMAIYDTMQFIKPDV 83

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L    +    A   + V     L  +                   
Sbjct: 84  RTLCIGQACSMGAFLLAGGTAGKRAALPHARVMIHQPLGGFRGQ---------------- 127

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            +Q+    +          ++       ++           +  
Sbjct: 128 --------------ASDIQIHAQEILKIKQTLNERLAFHTGQSIEQIEQDTDRDNFMSAE 173

Query: 217 EAKKVGLIDVV 227
           +AK  GL+D V
Sbjct: 174 QAKLYGLVDEV 184


>gi|319405542|emb|CBI79161.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella sp. AR
           15-3]
          Length = 210

 Score = 43.1 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 63/210 (30%), Gaps = 39/210 (18%)

Query: 40  RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G +ED+  ++   ++  +  ++    + + ++SPGG   +G AI+  +Q ++   
Sbjct: 37  IIFINGPVEDNMAMLVCAQLLFLEAENPKKEINLYINSPGGMVTSGMAIYDTMQFIRPSV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L + A+    A   + +                            
Sbjct: 97  STLCMGQAASMGSLLLTAGAAGRRFALPNARIMVHQPSG--------------------- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                      + +          +         +  +     Y+     L      T  
Sbjct: 136 -------GFQGQASDIERHA--QDIIKMKRRLNEIYVQHTGQNYEVIEKTLDRDHFMTAE 186

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
           EAK+ GLID      +V Q       ++  
Sbjct: 187 EAKQFGLID------DVIQYRAETEKEEKD 210


>gi|294141768|ref|YP_003557746.1| ATP-dependent Clp protease, proteolytic subunit [Shewanella
           violacea DSS12]
 gi|293328237|dbj|BAJ02968.1| ATP-dependent Clp protease, proteolytic subunit [Shewanella
           violacea DSS12]
          Length = 203

 Score = 43.1 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +E+  +  ++ ++  +  +     + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 38  IIFLVGPVEEHMANLVVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPDV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A+        S V     L      +     + +  + +  
Sbjct: 98  STVCIGQAASMGAFLLAGGAAGKRHCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILG 154

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                                +E    P +            + A
Sbjct: 155 IKNKLNEML---------------------------AEHTGQPLEVIERDTDRDNFMSAA 187

Query: 217 EAKKVGLIDVVGG 229
           +A + GL+D V  
Sbjct: 188 QAAEYGLVDSVMS 200


>gi|253796912|gb|ACT35711.1| capsid protein [Wolbachia phage WO]
          Length = 98

 Score = 43.1 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   +  ++++ +Q  VD  Y  FV+L++ +R +  +K      G  + G +A ++GL D
Sbjct: 1   PHEPMTSESLESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59

Query: 226 VVGGQEEVWQ 235
            V    E   
Sbjct: 60  GVTTFFEFIN 69


>gi|86360121|ref|YP_472010.1| membrane protein for nodulation competitiveness [Rhizobium etli CFN
           42]
 gi|86284223|gb|ABC93283.1| membrane protein for nodulation competitiveness [Rhizobium etli CFN
           42]
          Length = 446

 Score = 43.1 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 83/239 (34%), Gaps = 18/239 (7%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARI-AIRGQIEDS--QELIERIERISRDDSATALIVSLS 74
           + L ++  +W   V   S  V+ +  + G I  +    +I  I+R    ++   +++ + 
Sbjct: 1   MLLFLLLSAWVFGVPSASDRVSVVLKVNGAIGPAIADYVIRGIQRAGEREAV-LIVLQMD 59

Query: 75  SPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
           +PGG   +   I RAI          +      AASAG  I  AS+I   A  + +G+  
Sbjct: 60  TPGGLDTSMREIIRAILASPVPVASFVAPSGARAASAGTYILYASHIAAMAPGTNLGAAT 119

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
            +            LGV        P K    P  +         +    +    ++R +
Sbjct: 120 PIA-----------LGVKPFGGDEEPEKKPSEPSGKQAEAPGNAHEAKAVNDAVAYIRGL 168

Query: 194 SESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIK 250
           +E RN   +     + +    +   A +  +ID       ++        V      ++
Sbjct: 169 AELRNRNAEWAERAVREAASLSSTAAVREHVIDFTAVDINDLLAKAQGRMVRVGQTDLR 227


>gi|218440073|ref|YP_002378402.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanothece sp.
           PCC 7424]
 gi|218172801|gb|ACK71534.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 7424]
          Length = 229

 Score = 43.1 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 71/197 (36%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + +   I+D  +  ++ ++  +  +D    + + ++SPGGS YAG AI+  +Q+++   
Sbjct: 52  IVFLGTAIDDNVADSIVAQLLYLDAEDPEKDIQIYINSPGGSVYAGLAIYDTMQQIRPDV 111

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A    +A  ++ +     +         +D     I  +  
Sbjct: 112 VTICFGLAASMGAFLLSGGAKGKRMALPSARMMIHQPIGGAQGQAVEIDIQAKEILYI-- 169

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                             L++E    PYD+    ++   + +  
Sbjct: 170 ----------------------------KQRLNTLLAEHTGQPYDRIAEDTERDFYMSAY 201

Query: 217 EAKKVGLIDVVGGQEEV 233
           +AK  GLID V  + E+
Sbjct: 202 DAKNYGLIDQVIARSEL 218


>gi|238791431|ref|ZP_04635069.1| ATP-dependent Clp protease proteolytic subunit [Yersinia intermedia
           ATCC 29909]
 gi|238729047|gb|EEQ20563.1| ATP-dependent Clp protease proteolytic subunit [Yersinia intermedia
           ATCC 29909]
          Length = 194

 Score = 43.1 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 61/196 (31%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  +  ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 29  IIFLTGQVEDHMANLITAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +      ++           
Sbjct: 89  STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHARE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++     P ++        R  +  
Sbjct: 143 ------------------------ILKVKSRMNELMALHTGKPLEEIERDTERDRFLSAE 178

Query: 217 EAKKVGLIDVVGGQEE 232
           EA   GL+D V  + +
Sbjct: 179 EAVGYGLVDSVFTRRD 194


>gi|254525962|ref|ZP_05138014.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537386|gb|EEE39839.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Prochlorococcus marinus str. MIT 9202]
          Length = 214

 Score = 43.1 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 60/179 (33%), Gaps = 31/179 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           S  L+ ++  +  +D    + + ++SPGGS  AG AI+  +Q++      I      +  
Sbjct: 63  SDSLVAQLLFLEAEDPEKDIQIYINSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMG 122

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L   A    +A   S +     L         ++                       
Sbjct: 123 AFLLSGGAKGKRLALPNSRIMIHQPLGGAQGQAVEIE----------------------- 159

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                  +    +         L++E    P +K    ++   + + +EA + GLID V
Sbjct: 160 -------IQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEAVEYGLIDKV 211


>gi|170077811|ref|YP_001734449.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           PCC 7002]
 gi|169885480|gb|ACA99193.1| Clp protease [Synechococcus sp. PCC 7002]
          Length = 199

 Score = 43.1 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 61/179 (34%), Gaps = 29/179 (16%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           + ++I  +  +  +D +  + + ++SPGGS  AG AI+  ++ +K+    I      +  
Sbjct: 44  ANQIIAIMLYLDSEDPSKPIYLYINSPGGSVTAGLAIYDTMKHIKSEVVTICVGLAASMG 103

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L +      +A   S +     L      +   D    + + +              
Sbjct: 104 AFLLSAGTKGKRLALPHSRIMIHQPLGGIQGRRQATDIDIEAKEII-------------- 149

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                            H    L++       +K    +D   + +  EA + GLID V
Sbjct: 150 --------------RIKHQLNELMAAHTGQSIEKIEKDTDRDYFMSAQEALEYGLIDKV 194


>gi|91787906|ref|YP_548858.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Polaromonas
           sp. JS666]
 gi|91697131|gb|ABE43960.1| ATP-dependent Clp protease proteolytic subunit ClpP [Polaromonas
           sp. JS666]
          Length = 218

 Score = 43.1 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++    +   ++SPGGS  AG AI+  +Q +K   
Sbjct: 53  VIFLVGPVNDQTANLVVAQLLFLESENPDKDISFYINSPGGSVTAGMAIYDTMQFIKPDV 112

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A     +   S V               ++           
Sbjct: 113 STLCVGMAASMGAFLLSAGAKGKRFSLPNSRVMIHQPSGGAQGQATDIE----------- 161

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                              +    +  +     R+++ +   P +K              
Sbjct: 162 -------------------IHARDILKTRDQLNRILAANTGQPIEKIERDTERDYFLFAE 202

Query: 217 EAKKVGLIDVV 227
           +AK+ GL+D V
Sbjct: 203 DAKEYGLVDQV 213


>gi|121997404|ref|YP_001002191.1| ATP-dependent Clp protease proteolytic subunit [Halorhodospira
           halophila SL1]
 gi|226706517|sp|A1WUM7|CLPP_HALHL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|121588809|gb|ABM61389.1| ATP-dependent Clp protease proteolytic subunit ClpP [Halorhodospira
           halophila SL1]
          Length = 210

 Score = 43.1 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 63/197 (31%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED Q   L+ ++  +  ++    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 42  VIFLVGPVEDYQANLLVAQLLFLESENPDKDVHLYINSPGGSVTAGLAIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A     A   S +     L  +      +D           
Sbjct: 102 ATLCVGQAASMGALLLAAGAEGKRHALPNSRMMIHQPLGGFQGQATDIDIHARE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                                   + S       +++       +     +D   +  AE
Sbjct: 156 ------------------------ILSMRDRLNTILAHHTGQDIETIRQDTDRDNFMAAE 191

Query: 218 -AKKVGLIDVVGGQEEV 233
            A + GLID V      
Sbjct: 192 AAAQYGLIDRVLTSRGA 208


>gi|332809376|ref|XP_003308229.1| PREDICTED: calcium-activated chloride channel regulator 4 isoform 1
           [Pan troglodytes]
          Length = 682

 Score = 43.1 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 74/265 (27%), Gaps = 21/265 (7%)

Query: 46  QIEDSQELIERIER-----------ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
            I +S++    I             +        L++  S   G       + +A +   
Sbjct: 38  VISNSEDFKNTIPMVTPPPPPVFSLLKISQRIVCLVLDKSGSMGGKDRLNRMNQAAKHFL 97

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV-KPFLDKLGVSIK 153
            +         M             I + +       +  L  YP         +  + +
Sbjct: 98  LQTVENGSWVGMVHFDSTATVVNKLIQIKSSDERNTLMAGLPTYPRGGTSICSGIKYAFQ 157

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW--FVRLVSESRNIPYDKTL--VLSD 209
            +     + + S    +           +D        V  ++  R+          ++ 
Sbjct: 158 VIGELHSQLDGSEVLLLTDGEDNTASSCIDEVKQSGAIVHFIALGRDADEAVIEMSKITG 217

Query: 210 GR-IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
           G   +   EA+  GLID  G        L    +    + +       N W  D   +  
Sbjct: 218 GSHFYVSDEAQNNGLIDAFGALTSGNTDLSQKSLQLESKGL---TLNSNPWMNDTVIID- 273

Query: 269 SSLLEDTIPLMKQTKVQGLWAVWNP 293
           S++ +DT  L+    +    ++W+P
Sbjct: 274 STVGKDTFFLITWNSLPPSISLWDP 298


>gi|225352780|ref|ZP_03743803.1| hypothetical protein BIFPSEUDO_04410 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156387|gb|EEG69956.1| hypothetical protein BIFPSEUDO_04410 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 233

 Score = 43.1 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 30/181 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    +++ ++SPGGS  A  AI+  +Q +K     +      +
Sbjct: 77  TSADDIMAQLLVLESQDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 136

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L + A    +    + V          + K                         
Sbjct: 137 AAAILLAAGAKGKRLMLPNARVLIHQPAIDQGFGKA------------------------ 172

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226
                  +++    +     W    +++      +K    +      T  EAK+ G++D 
Sbjct: 173 -----TEIEIQAKEMLRMREWLENTLAKHTGRDVEKIRKDIEVDTFLTAPEAKEYGIVDE 227

Query: 227 V 227
           V
Sbjct: 228 V 228


>gi|116243153|sp|Q1Q8J2|CLPP_PSYCK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 215

 Score = 43.1 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG AIF  +  +K   
Sbjct: 47  VIFLTGQVEDHMANLIVAQLLFLEAENPDKDIHLYINSPGGSVSAGLAIFDTMNFIKPEV 106

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +       A   + V               ++           
Sbjct: 107 STICMGGAYSMGSFLLAAGEKGKRYALANARVMIHQPSGGAQGQATDIEINARE------ 160

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
                                   +  +      +++E    P DK     +   W    
Sbjct: 161 ------------------------ILKTRARLNEILAERTGQPVDKIEKDVERDYWLDAK 196

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 197 EAKEYGLIDEV 207


>gi|330469650|ref|YP_004407393.1| endopeptidase clp [Verrucosispora maris AB-18-032]
 gi|328812621|gb|AEB46793.1| endopeptidase clp [Verrucosispora maris AB-18-032]
          Length = 212

 Score = 43.1 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 57/176 (32%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +  ++  ++ +D    + + ++SPGGS Y+G AI+  +Q + N    +     MAAS G 
Sbjct: 52  ICAQLLLLAAEDPDRDIFLWINSPGGSVYSGMAIYDTMQYIDNDVSTVA--MGMAASMGQ 109

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L+ CA                           L                           
Sbjct: 110 LLLCAGTKGKR-----YALPHARIMMHQPSGGLGG-----------------------TA 141

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVV 227
             + +  + +  +   F   V+        +    SD  R +T  EA   G ID V
Sbjct: 142 SDIAIQAEQMLYTKRMFQERVAHHTGQSQAQIEADSDRDRWFTAQEAMDYGFIDKV 197


>gi|282900541|ref|ZP_06308485.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
 gi|281194594|gb|EFA69547.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
          Length = 237

 Score = 43.1 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 68/191 (35%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  ++ ++  +  +D    + + ++SPGGS YAG AI+  IQ+++   
Sbjct: 60  IIFLGTAIDDNVANSIVAQLLFLDAEDPEKDVQLYINSPGGSVYAGMAIYDTIQQIRPDV 119

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +  +   ++   S +     L         ++     I  +  
Sbjct: 120 VTICFGLAASMGAFLLTAGTAGKRMSLPDSRIMIHQPLGGAQGQAIDIEIQAREILYI-- 177

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                            +L+S+    P ++    ++   + +  
Sbjct: 178 ----------------------------KANLNQLMSKHTGQPLERIEADTERDFFMSPQ 209

Query: 217 EAKKVGLIDVV 227
           EAK  GLID V
Sbjct: 210 EAKDYGLIDQV 220


>gi|160939893|ref|ZP_02087240.1| hypothetical protein CLOBOL_04784 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437327|gb|EDP15092.1| hypothetical protein CLOBOL_04784 [Clostridium bolteae ATCC
           BAA-613]
          Length = 196

 Score = 43.1 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 54/184 (29%), Gaps = 26/184 (14%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  +I ++  +   D    + + ++SPGGS  AG A++  +Q +K     I      +
Sbjct: 39  TSASLIIAQLLFLESTDPDKDIQLYINSPGGSVTAGWAVYDTMQYIKCDVSTICLGLAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L   A    +A   S                         + +   P        
Sbjct: 99  FGAFLLAGGAHGKRMALPNS-------------------------EIMIHQPAIHGNGIQ 133

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
              +   +              V  V+  R+   +           +  EA + GLID +
Sbjct: 134 GPASDIKIMSDYMQKSRQRLNRVLAVNTGRSE-EEIARDTERDNFMSAEEALEYGLIDSI 192

Query: 228 GGQE 231
             + 
Sbjct: 193 LTRR 196


>gi|327440946|dbj|BAK17311.1| membrane-bound serine protease [Solibacillus silvestris StLB046]
          Length = 442

 Score = 43.1 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 5/129 (3%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSA 66
           +T+ +    + +      + S        V  I+I  +IE    + L    +    + +A
Sbjct: 3   RTKGISWIFLMVMSFVLMFPSLTAFADGKVYEISISNEIEKGLVEHLKRGFDEAKSN-NA 61

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
            A+I+++ +PGG   A   I R +  +    P+I  V+  A SAG  I+  ++ I     
Sbjct: 62  EAIILNMHTPGGFVAAASEIGRLMDAI--DIPIIAFVNSDALSAGAYIALHADKIYMTPN 119

Query: 127 SLVGSIGVL 135
           + +G+  V+
Sbjct: 120 ATMGAAAVI 128


>gi|218247705|ref|YP_002373076.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 8801]
 gi|257060958|ref|YP_003138846.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 8802]
 gi|218168183|gb|ACK66920.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 8801]
 gi|256591124|gb|ACV02011.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 8802]
          Length = 229

 Score = 43.1 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 31/179 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  ++ ++  +  +D    + + ++SPGGS YAG AI+  +Q+++     I      +  
Sbjct: 64  ADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVATICFGLAASMG 123

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L   A    +A  +S +     L         ++     I  +              
Sbjct: 124 AFLLCGGAPGKRMALPSSRIMIHQPLGGAQGQAVEIEIQAKEILYI-------------- 169

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                                 +++     P+D     ++   + +  EAK+ GLID V
Sbjct: 170 ----------------KRRLNEMLASHTGQPFDTIAEDTERDFFMSAQEAKEYGLIDKV 212


>gi|241203529|ref|YP_002974625.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240857419|gb|ACS55086.1| Endopeptidase Clp [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 203

 Score = 43.1 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 65/196 (33%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D+    +  ++  +  ++    + + ++SPGG   +G A++  ++ ++   
Sbjct: 33  IIFLNGEVNDTVSALVCAQLLFLEAENPKKPINLYINSPGGVVTSGLAMYDTMRFIRAPV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                         + +   +   + +   + G  G     P     + +     +    
Sbjct: 93  --------------HTLCMGTARSMGSFLLMAGEAGGRAALPNASILIHQPSGGFQG--- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +  + +  +     RL +E     Y+     +   R  T  
Sbjct: 136 -------------QASDMMIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAE 182

Query: 217 EAKKVGLIDVVGGQEE 232
           EA + GLID +    E
Sbjct: 183 EALEWGLIDRILTVRE 198


>gi|57168633|ref|ZP_00367765.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           coli RM2228]
 gi|305432739|ref|ZP_07401899.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter coli
           JV20]
 gi|57019914|gb|EAL56594.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           coli RM2228]
 gi|304444248|gb|EFM36901.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter coli
           JV20]
          Length = 194

 Score = 43.1 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  ++ ++  +  +D    + + ++SPGG   +G +I+  +  +K   
Sbjct: 28  IIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     A   S +     L         ++           
Sbjct: 88  CTICIGQAASMGAFLLSCGAEGKRFALPNSRIMIHQPLGGARGQATDIE----------- 136

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216
                              +    +         +++++      K           +  
Sbjct: 137 -------------------IQAKEILRLKAILNDILAKNTKQKVAKIVKDTERDFFMSAQ 177

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 178 EAKEYGLIDKV 188


>gi|332376543|gb|AEE63411.1| unknown [Dendroctonus ponderosae]
          Length = 232

 Score = 43.1 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 31/193 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D+    ++ ++  +  + +  A+ + ++SPGGS  AG  I+  +Q +    
Sbjct: 52  IICLMGPINDAMSSLIVAQLLFLQSESTNKAIHMYINSPGGSVTAGLGIYDTMQYILPPV 111

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                                      + + + S+ +    P ++  L    + I     
Sbjct: 112 ATWCV---------------------GQAASMASLLLASGTPGMRHSLPNARIMIHQPSG 150

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                      +         Q     + H    L    RN+  D           + AE
Sbjct: 151 GAQGQATDIKIQAEEIIKLKNQINALYARHTTQPLEKIERNMERD--------TFMSPAE 202

Query: 218 AKKVGLIDVVGGQ 230
           A+  G+ID +   
Sbjct: 203 AQSFGIIDKILTS 215


>gi|257865163|ref|ZP_05644816.1| peptidase S14 [Enterococcus casseliflavus EC30]
 gi|257871487|ref|ZP_05651140.1| peptidase S14 [Enterococcus casseliflavus EC10]
 gi|257874785|ref|ZP_05654438.1| peptidase S14 [Enterococcus casseliflavus EC20]
 gi|325571575|ref|ZP_08147075.1| ATP-dependent Clp protease, protease subunit [Enterococcus
           casseliflavus ATCC 12755]
 gi|257799097|gb|EEV28149.1| peptidase S14 [Enterococcus casseliflavus EC30]
 gi|257805651|gb|EEV34473.1| peptidase S14 [Enterococcus casseliflavus EC10]
 gi|257808951|gb|EEV37771.1| peptidase S14 [Enterococcus casseliflavus EC20]
 gi|325156051|gb|EGC68247.1| ATP-dependent Clp protease, protease subunit [Enterococcus
           casseliflavus ATCC 12755]
          Length = 196

 Score = 43.1 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 60/195 (30%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ D     +I ++  +   DS   + + ++SPGGS  AG AIF  +  +K   
Sbjct: 29  IIMLSGQVTDDLANSIIAQLLFLDAQDSEKDIYLYINSPGGSVTAGLAIFDTMNFIKADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +       A   + +     L         ++           
Sbjct: 89  QTIVMGMAASMGSFLLTAGEKGKRFALPNAEIMIHQPLGGAQGQATEIEIAAR------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   + ++     +++SE    P +            T  
Sbjct: 142 -----------------------HILATRERLNKILSERTGQPIEVIERDTDRDNFMTAQ 178

Query: 217 EAKKVGLIDVVGGQE 231
           EAK  GLID +    
Sbjct: 179 EAKDYGLIDEIMESN 193


>gi|256751183|ref|ZP_05492064.1| band 7 protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749908|gb|EEU62931.1| band 7 protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 697

 Score = 43.1 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 85/275 (30%), Gaps = 39/275 (14%)

Query: 27  WSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
            SS        V  ++I G I    +  +   ++   ++  A+ +++ LS+PGG     +
Sbjct: 22  SSSKAVPPQSPVYVLSIDGPIVPVVADYIESGLQEAEKN-GASCIVIELSTPGGLYSTTQ 80

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            I   I        V                 A     +A T +  S  V    P  +  
Sbjct: 81  KIVTKILNSPIPVVVYVSP-------------AGAWAGSAGTFITLSANVAAMAPGSRIG 127

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
                                  S ++    Q +     +        ++E+R       
Sbjct: 128 A-------------AHPVSMEDDSALSDVQRQKLTHDAAAWIRS----IAENRGRDPKNA 170

Query: 205 L-VLSDGRIWTGAEAKKVGLIDVVGG-QEEVWQSLYALGV---DQSIRKIKDWNPPKNYW 259
              + + + +T  EA    L+D       ++ + +  L V   D +I  ++   P K + 
Sbjct: 171 EMAVIESKSFTDTEALNAHLVDFKATNLNDLLKKINGLTVKNFDGTITTLQTDGPIKYFP 230

Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQGL-WAVWNP 293
               +    +    +   L+    + G+   +++P
Sbjct: 231 MSSAQKFLFAISDPNIAYLLMSAGILGIVLELYHP 265


>gi|222087754|ref|YP_002546291.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Agrobacterium
           radiobacter K84]
 gi|221725202|gb|ACM28358.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Agrobacterium
           radiobacter K84]
          Length = 214

 Score = 43.1 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 66/196 (33%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D+    +  ++  +  ++S   + + ++SPGG   +G A++  ++ ++   
Sbjct: 40  IIFLNGEVNDTVSALVCAQLLFLEAENSRKPISLYINSPGGVVTSGLAMYDTMRYIRAPV 99

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L++  +    A   S +     L  +      +      ++    
Sbjct: 100 HTLCMGTARSMGSFLLMAGQAGERSALPNSSIHIHQPLGGFQGQASDMLIHAAEME---- 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216
                                      + H   RL +E     Y++    +      T  
Sbjct: 156 --------------------------RTKHRMTRLYAEHCGRTYEEFERAMDRDHFMTAE 189

Query: 217 EAKKVGLIDVVGGQEE 232
           +A + GLID +    E
Sbjct: 190 QALEWGLIDRILQVRE 205


>gi|226311381|ref|YP_002771275.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
           brevis NBRC 100599]
 gi|226094329|dbj|BAH42771.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
           brevis NBRC 100599]
          Length = 193

 Score = 42.7 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 63/187 (33%), Gaps = 33/187 (17%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            I  +I +   ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K     I 
Sbjct: 34  EIDDEIANL--IVAQLLFLQAEDPDKDISLYINSPGGSVTAGMAIYDTMQYIKPDVSTIC 91

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                +  A  L + A     A   + V     L                          
Sbjct: 92  VGMAASMGAFLLAAGAKGKRFALPNAEVMIHQPLGGVRGQ-------------------- 131

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKK 220
                      + +++  + +  +      ++SE    PY++           +  EAK 
Sbjct: 132 ----------AEDIRIHAEWIMKTKRQLNEILSERTGQPYERVEQDTDRDNFMSAEEAKA 181

Query: 221 VGLIDVV 227
            GLID +
Sbjct: 182 YGLIDSI 188


>gi|167461037|ref|ZP_02326126.1| serine protease (phage related-protein, ClpP family) [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 238

 Score = 42.7 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 69/239 (28%), Gaps = 41/239 (17%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +    E ++R+      + + + ++SPGGS + G AI   +++ K    V   V  +A
Sbjct: 27  TSAASFKEDLDRLGD---LSTINLYINSPGGSVFEGIAIHNMLKRHKAN--VHVYVDALA 81

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           AS   +I+ A + I   + S++                                     +
Sbjct: 82  ASIASVIAMAGDTIYMPKNSMLMIHN----------------------------PWIFAW 113

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDV 226
              +             +      L      +  +K   + D   W +  EA + GL D 
Sbjct: 114 GNASEMRKIADDLDRIGNSSKQTYLQKAGDKLSDEKLQEMLDAETWLSADEAFEYGLCD- 172

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
                 V Q    +    S   I  +           +       +     +  ++K  
Sbjct: 173 ------VVQEANTMAASISDEFINRYKNVPKQLISQQQTPISVGDMAKRQQIADESKEN 225


>gi|260769269|ref|ZP_05878202.1| nfed family protein [Vibrio furnissii CIP 102972]
 gi|260614607|gb|EEX39793.1| nfed family protein [Vibrio furnissii CIP 102972]
          Length = 446

 Score = 42.7 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 77/216 (35%), Gaps = 22/216 (10%)

Query: 12  YVMLSLVTLTVVYFSWSSHV-EDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA 68
            ++ SL++ + +  + +++     S  V  IAI G I  +    +I+ ++R ++  +  A
Sbjct: 8   VLLTSLLSFSTLATADTTNAPAAPSQTVPVIAISGAIGPAVGDYVIKELQRANQQVNTPA 67

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           +IV+L +PGG +     I + I         +                      +A T +
Sbjct: 68  VIVTLDTPGGLSSTLRDINQHILASDIPVLCLVYP-------------PGARAASAGTYI 114

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
           + +  +    P        LG +       P         + +       + + DS  + 
Sbjct: 115 LYACHIAAMAPATT-----LGAATPVQIGGPSPGGGEQQDKPSEPTAMEKKVLNDSIAYI 169

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLI 224
                   RN+ + +   + D    +  EA ++ +I
Sbjct: 170 RSLAQLRGRNVEWAE-KAVRDAATLSAIEALEMNVI 204


>gi|260460897|ref|ZP_05809147.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesorhizobium
           opportunistum WSM2075]
 gi|259033474|gb|EEW34735.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesorhizobium
           opportunistum WSM2075]
          Length = 209

 Score = 42.7 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 59/199 (29%), Gaps = 33/199 (16%)

Query: 40  RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G +ED    +   ++  +  ++    + + ++SPGG   +G AI+  +Q +K   
Sbjct: 37  IIFITGPVEDGMATLVCAQLLFLEAENPKKEINLYINSPGGVVTSGMAIYDTMQFIKPAV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +   ++  A   + +                            
Sbjct: 97  STLCIGQAASMGSLLLTAGHKDMRFATPNARIMVHQPSG--------------------- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                      + +          +         +  +     Y++    L      T  
Sbjct: 136 -------GFQGQASDIERHAQD--IIKLKRRLNEVYVKHTGKSYEEIEKTLDRDHFMTAD 186

Query: 217 EAKKVGLIDVVGGQEEVWQ 235
           EA+  GLID V    E  +
Sbjct: 187 EARDFGLIDKVISSREAAE 205


>gi|154707166|ref|YP_001423941.1| non-proteolytic membrane spanning protein, peptidase family S49
           [Coxiella burnetii Dugway 5J108-111]
 gi|154356452|gb|ABS77914.1| non-proteolytic membrane spanning protein, peptidase family S49
           [Coxiella burnetii Dugway 5J108-111]
          Length = 458

 Score = 42.7 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 74/232 (31%), Gaps = 23/232 (9%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVAR-IAIRGQI--EDSQELIERIERIS 61
            K+I  R   + ++T  ++  +     ++N+  +A  I I+G I    +      +++ +
Sbjct: 4   RKRIFIRRFYILMLTFGLLGIASHIIAQNNTRRLAILIDIKGGIGPATADFFHRSLKQAT 63

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
               A  +I+ L +PGG A A   I + I                 +    +   A +  
Sbjct: 64  E-KKAQVIILQLDTPGGLATAMRDIIKDILA---------------SPIPVIGYVAPSGA 107

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS---PMKAEPSPFSEVNPKAVQMM 178
            AA                    L                    E    ++  P      
Sbjct: 108 HAASAGTYILYATHIAAMAPGTNLGAATPIAIGTPGGSSPEKGNEKKEGAKKAPAQKTAA 167

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229
           +    S    ++R +++ R    +     + +    +  EA K+ +I+++  
Sbjct: 168 EKKAISDARAYIRSLAQLRGRNVEWAESAVVEAESLSAEEAYKIKVINIIAS 219


>gi|238795542|ref|ZP_04639057.1| ATP-dependent Clp protease proteolytic subunit [Yersinia mollaretii
           ATCC 43969]
 gi|238720661|gb|EEQ12462.1| ATP-dependent Clp protease proteolytic subunit [Yersinia mollaretii
           ATCC 43969]
          Length = 194

 Score = 42.7 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 60/196 (30%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  +  ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 29  IIFLTGQVEDHMANLITAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +      ++           
Sbjct: 89  STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHARE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 143 ------------------------ILKVKSRMNELMALHTGKSLEEIERDTERDRFLSAE 178

Query: 217 EAKKVGLIDVVGGQEE 232
           EA   GL+D V  + +
Sbjct: 179 EAVGYGLVDSVFTRRD 194


>gi|86739912|ref|YP_480312.1| ClpP1 peptidase. Serine peptidase. MEROPS family S14 [Frankia sp.
           CcI3]
 gi|108935915|sp|Q2JDQ9|CLPP1_FRASC RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|86566774|gb|ABD10583.1| ATP-dependent Clp protease proteolytic subunit ClpP [Frankia sp.
           CcI3]
          Length = 213

 Score = 42.7 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 62/186 (33%), Gaps = 33/186 (17%)

Query: 43  IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102
           +   I ++  +  ++  ++ +D    + + ++SPGGS  AG AI+  +Q V+N    ++ 
Sbjct: 46  VEDSIANA--ICAQLLLLNAEDPTRDIFLYINSPGGSVSAGMAIYDTMQFVENDVATVSL 103

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
               +     L + AS    +   + +                                 
Sbjct: 104 GLAASMGQFLLCAGASGKRYSLPHARIMMHQPSGGIGG---------------------- 141

Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKV 221
                       + +  + +  +       ++     P ++    SD  R +T  EAK  
Sbjct: 142 --------TASDIAIQAEQMLYTKRMMQERIAFHTGQPIEQIERDSDRDRWFTAEEAKDY 193

Query: 222 GLIDVV 227
           G +D V
Sbjct: 194 GFVDHV 199


>gi|307718289|ref|YP_003873821.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta
           thermophila DSM 6192]
 gi|306532014|gb|ADN01548.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta
           thermophila DSM 6192]
          Length = 206

 Score = 42.7 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 60/190 (31%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G+I D  +  ++ ++  +   D    + V +++PGGS  AG AI+  +Q VK   
Sbjct: 34  IVFIDGEINDLTADLVVAQLLFLESQDPEKDISVYINTPGGSVTAGLAIYDTMQYVKPDV 93

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +      +A  +S +               +      +  +  
Sbjct: 94  QTICLGQAASMGALLLTAGTPGKRLALPSSRILIHQPWGGVQGQATDISIQAREMVRI-- 151

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                             +++              V++           L      T  E
Sbjct: 152 -----------------KKLLIHYFARHTGRPEEEVAQ----------DLERDYYMTPEE 184

Query: 218 AKKVGLIDVV 227
           AK  GLID +
Sbjct: 185 AKAYGLIDDI 194


>gi|325674309|ref|ZP_08153998.1| Clp protease [Rhodococcus equi ATCC 33707]
 gi|325554989|gb|EGD24662.1| Clp protease [Rhodococcus equi ATCC 33707]
          Length = 376

 Score = 42.7 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 63/181 (34%), Gaps = 37/181 (20%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +Q + E+I+ I+ D+    + V ++SPGGSA+ G AI  A++    R  V+  V  +A
Sbjct: 32  TSAQAIAEQIKDITADE----ITVRINSPGGSAFDGIAIMNALRAHNAR--VVVHVDGLA 85

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           ASA  +I+ A + IV    S +                                   S  
Sbjct: 86  ASAASVIAMAGDEIVMGPGSQMMIHE------------------AWVFTEGDAAFLRSEA 127

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDV 226
             ++                    L +      +D+   L     W T  EA   GL D 
Sbjct: 128 DRLDK------------MSDSITSLYARRAGGDFDEWRALVAAETWFTAEEAVTAGLADR 175

Query: 227 V 227
           +
Sbjct: 176 I 176


>gi|15965008|ref|NP_385361.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           meliloti 1021]
 gi|307301080|ref|ZP_07580849.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium
           meliloti BL225C]
 gi|307317814|ref|ZP_07597252.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium
           meliloti AK83]
 gi|18202306|sp|P58278|CLPP2_RHIME RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|15074187|emb|CAC45834.1| Probable ATP-dependent CLP protease proteolytic subunit
           [Sinorhizobium meliloti 1021]
 gi|306896576|gb|EFN27324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium
           meliloti AK83]
 gi|306904035|gb|EFN34621.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium
           meliloti BL225C]
          Length = 208

 Score = 42.7 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 59/199 (29%), Gaps = 33/199 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +  ++  +  ++    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 37  IIFLTGPVEDHMATLVCAQLLFLEAENPKKEVALYINSPGGVVTAGMAIYDTMQFIKPAV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +   ++  A   S +                            
Sbjct: 97  STLCIGQAASMGSLLLAAGHKDMRFATPNSRIMVHQPSG--------------------- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                      + +          +         +  +     Y++    L      +  
Sbjct: 136 -------GFQGQASDIERHA--RDILKMKRRLNEVYVKHCGRTYEEVEQTLDRDHFMSAD 186

Query: 217 EAKKVGLIDVVGGQEEVWQ 235
           EA   GLID V    +  +
Sbjct: 187 EALDWGLIDKVITSRDAVE 205


>gi|87312030|ref|ZP_01094138.1| hypothetical protein DSM3645_13173 [Blastopirellula marina DSM
           3645]
 gi|87285269|gb|EAQ77195.1| hypothetical protein DSM3645_13173 [Blastopirellula marina DSM
           3645]
          Length = 700

 Score = 42.7 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 77/213 (36%), Gaps = 8/213 (3%)

Query: 41  IAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
           + + G + ++Q  +L+  I+    D     +++ + SPGG   A E++   + K      
Sbjct: 256 VKLSGGVTNNQVQQLMRLIQSEVSD-KVNLVLIEIDSPGGDPVAVESLMNYLMKQPAEVR 314

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI---KSV 155
            +  + + AA    +++ A + IV A  SLVG  G           +    + +   K  
Sbjct: 315 TVALIKQQAAGNAAIVAFACDEIVVATDSLVGGAGAYQYSEQGTTDVRNFLIQVGEKKQR 374

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WT 214
           + S   A   P  EV     +              + ++        + + ++   +  T
Sbjct: 375 RWSAWAAMCDPQLEVANYRHKQSGLTALFCAEELQQQIAPD-QWEQTEVITIAGQPLELT 433

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           G +A  + L+D +          Y +  + S  
Sbjct: 434 GGQAFDLRLVDAIAADATDVARRYGVSGEISTP 466


>gi|296136117|ref|YP_003643359.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thiomonas
           intermedia K12]
 gi|295796239|gb|ADG31029.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thiomonas
           intermedia K12]
          Length = 202

 Score = 42.7 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D     ++ ++  +  ++    + + ++SPGGS  AG AIF  +Q +K   
Sbjct: 37  VIFLVGPINDQMANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPDV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  + + A     +   S +               ++           
Sbjct: 97  STLCTGIAASMGAFLMAAGAKGKRYSLPNSRIMIHQPSGGAQGQATDIE----------- 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                              +    +         +++E      +K  +        +  
Sbjct: 146 -------------------IQAREILYLRERLNGILAERTGQTLEKIGIDTERDFFMSAE 186

Query: 217 EAKKVGLIDVV 227
           EAK  GLID V
Sbjct: 187 EAKDYGLIDEV 197


>gi|212716951|ref|ZP_03325079.1| hypothetical protein BIFCAT_01895 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660236|gb|EEB20811.1| hypothetical protein BIFCAT_01895 [Bifidobacterium catenulatum DSM
           16992]
          Length = 233

 Score = 42.7 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 30/181 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    +++ ++SPGGS  A  AI+  +Q +K     +      +
Sbjct: 77  TSADDIMAQLLVLESQDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 136

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L + A    +    + V          + K                         
Sbjct: 137 AAAILLAAGAKGKRLMLPNARVLIHQPAIDQGFGKA------------------------ 172

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226
                  +++    +     W    +++      +K    +      T  EAK+ G++D 
Sbjct: 173 -----TEIEIQAKEMLRMREWLENTLAKHTGRDVEKIRKDIEVDTFLTAPEAKEYGIVDE 227

Query: 227 V 227
           V
Sbjct: 228 V 228


>gi|157414262|ref|YP_001485128.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9215]
 gi|157388837|gb|ABV51542.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9215]
          Length = 214

 Score = 42.7 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 60/179 (33%), Gaps = 31/179 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           S  L+ ++  +  +D    + + ++SPGGS  AG AI+  +Q++      I      +  
Sbjct: 63  SDSLVAQLLFLEAEDPEKDIQIYINSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMG 122

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L   A    +A   S +     L         ++                       
Sbjct: 123 AFLLSGGAKGKRLALPNSRIMIHQPLGGAQGQAVEIE----------------------- 159

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                  +    +         L++E    P +K    ++   + + +EA + GLID V
Sbjct: 160 -------IQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEAVEYGLIDKV 211


>gi|167627759|ref|YP_001678259.1| ATP-dependent Clp protease proteolytic subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|241668323|ref|ZP_04755901.1| endopeptidase Clp [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254876856|ref|ZP_05249566.1| ATP-dependent Clp protease subunit P [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|189082458|sp|B0TZA5|CLPP_FRAP2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|167597760|gb|ABZ87758.1| Endopeptidase Clp [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|254842877|gb|EET21291.1| ATP-dependent Clp protease subunit P [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 201

 Score = 42.7 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 58/198 (29%), Gaps = 33/198 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++ D     +I ++  +  +D    +   ++SPGG   AG  ++  +Q +K   
Sbjct: 32  IVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTMQFIKPDV 91

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L   A     +  +S +     L  +      ++    +I  +K 
Sbjct: 92  NTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKD 151

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216
              K                                +       +               
Sbjct: 152 RLNKVL------------------------------AHHTGQDLETIVRDTDRDNFMMAD 181

Query: 217 EAKKVGLIDVVGGQEEVW 234
           EAK+ GLID V    E  
Sbjct: 182 EAKEYGLIDHVIESREAI 199


>gi|161486690|ref|YP_719644.2| ATP-dependent Clp protease proteolytic subunit [Haemophilus somnus
           129PT]
          Length = 193

 Score = 42.7 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED     ++ ++  +  +D A  + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  VIFLTGEVEDRMANLIVAQLLFLEAEDPAKDINIYINSPGGSVTAGMAIYDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L    +    A   + V     L  +                   
Sbjct: 89  RTLCIGQACSMGAFLLAGGTAGKRAALPHARVMIHQPLGGFRGQ---------------- 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            +Q+    +          ++       ++           +  
Sbjct: 133 --------------ASDIQIHAQEILKIKQTLNERLAFHTGQSIEQIEQDTDRDNFMSAE 178

Query: 217 EAKKVGLIDVV 227
           +AK  GL+D V
Sbjct: 179 QAKLYGLVDEV 189


>gi|58978319|gb|AAW83211.1| capsid protein [Wolbachia phage WO]
          Length = 136

 Score = 42.7 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   +  ++++ +Q  VD  Y  FV+L++ +R++  +K      G  + G +A ++GL D
Sbjct: 1   PHEPMTSESLESLQKEVDRLYEMFVQLIARNRSLSIEKIRSTEAGLYF-GEKAVEIGLAD 59

Query: 226 VVGGQEEVWQS 236
            V    E    
Sbjct: 60  GVTTFFEFINK 70


>gi|75908095|ref|YP_322391.1| hypothetical protein Ava_1874 [Anabaena variabilis ATCC 29413]
 gi|75701820|gb|ABA21496.1| Protein of unknown function DUF114 [Anabaena variabilis ATCC 29413]
          Length = 297

 Score = 42.7 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 71/183 (38%), Gaps = 14/183 (7%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            IEDS++++  I     D     ++    +PGG   A E I RA+ +   +  V   V  
Sbjct: 68  TIEDSEQILRAIRLTPPDVPIDLIL---HTPGGLVLATEQIARALIRHSAK--VTVFVPH 122

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
            A S G +++ A++ IV    +++G +            L  +           +  +  
Sbjct: 123 YAMSGGTMLALAADEIVMDANAVLGPVDPQLGNFPAASILKVVKDKP----IGEIDDQTL 178

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-----WTGAEAKK 220
             +++  KA+Q +Q  V +     +     +          L+ GR+      T  EA +
Sbjct: 179 IMADLAAKAIQQVQRFVRTLLKDNIPKQKVNPENIESIIEALTTGRVTHDYPITVEEATE 238

Query: 221 VGL 223
           +GL
Sbjct: 239 MGL 241


>gi|14590206|ref|NP_142271.1| hypothetical protein PH0282 [Pyrococcus horikoshii OT3]
 gi|3256671|dbj|BAA29354.1| 280aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 280

 Score = 42.7 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 11/178 (6%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+E++  I    +D     +I    +PGG   A   I +A++       VI   + M
Sbjct: 73  IEDSEEVLRAIRMAPKDKPIDLII---HTPGGLVLAATQIAKALKDHPAETRVIVPHYAM 129

Query: 107 AASAGYLISCASNIIVAAETSLVGSIG-VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           +   G LI+ A++ I+    +++G +   L QYP            +  V    +     
Sbjct: 130 SG--GTLIALAADKIIMDPHAVLGPVDPQLGQYPAPSIVRAVEKKGVDKVDDQTLILADV 187

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
               +      +   + D       + +++            +     T  EAKK+GL
Sbjct: 188 AEKAIRQVRDFIFNLLKDKYGEEKAKELAQ-----VLTEGRWTHDYPITVEEAKKLGL 240


>gi|332977273|gb|EGK14064.1| ATP-dependent Clp protease, protease subunit [Psychrobacter sp.
           1501(2011)]
          Length = 240

 Score = 42.7 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED+    ++ ++  +  ++    + + ++SPGGS  AG A+F  +  +K   
Sbjct: 71  VIFLTGQVEDNMANLIVAQMLFLEAENPDKDIHLYINSPGGSVSAGLAMFDTMNFIKPDV 130

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +       A   S V               ++     I  +  
Sbjct: 131 STICMGGAYSMGSFLLAAGQKGKRYALANSRVMIHQPSGGAQGQATDIEINAREILKI-- 188

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
                                            R+++E    P +K     +   W    
Sbjct: 189 ----------------------------RDRLNRILAERTGQPLEKIERDVERDYWLDAQ 220

Query: 217 EAKKVGLIDVV 227
           EAK+ GL+D V
Sbjct: 221 EAKEYGLVDEV 231


>gi|298714280|emb|CBJ27396.1| chloroplast clp protease P [Ectocarpus siliculosus]
          Length = 264

 Score = 42.7 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 60/176 (34%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           L+ ++  ++ DD    + + ++SPGGS  AG AI+  +Q +      +      +  A  
Sbjct: 102 LVAQLLYLANDDPEKDITLYINSPGGSVSAGLAIYDTMQFIPCDVATVCFGMAASMGAFL 161

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + ++    +   S +     L         ++                          
Sbjct: 162 LGAGSAGKRKSLPNSRIMIHQPLGGAAGQAADIE-------------------------- 195

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
               +    +  +       +SE  + P DK    +D   + T  EA + GLID V
Sbjct: 196 ----IQAKEILFTKRLLNGYMSEYTDQPADKIEEDTDRDFFMTPIEAMEYGLIDEV 247


>gi|323499265|ref|ZP_08104242.1| hypothetical protein VISI1226_03565 [Vibrio sinaloensis DSM 21326]
 gi|323315653|gb|EGA68687.1| hypothetical protein VISI1226_03565 [Vibrio sinaloensis DSM 21326]
          Length = 434

 Score = 42.7 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 80/237 (33%), Gaps = 25/237 (10%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSL 73
            L+     + +    V    P V  I+I G I  +  Q +IE I R ++  S  ALI+++
Sbjct: 1   MLLLCFSAFIAAEEAVPSKPPTVPLISIDGAIGPAVGQYVIEEIARANKVGS-PALIITI 59

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
            +PGG   +   I +AI   +     +                      +A T ++ +  
Sbjct: 60  DTPGGLVTSLRDINQAILNSQIPILCLVHP-------------QGARAASAGTFILYACH 106

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           +    P        LG +       P   +    S         + +   +      +L 
Sbjct: 107 IAAMAPATS-----LGAATPVSIGGPSPTQKEQESSEPSAMENKVLNDSIAYIRSLAQL- 160

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSLYALGVDQSIRKI 249
              RN  + +   + D    +  EA    +I+++    +++   L    V+ +   +
Sbjct: 161 -RGRNAEWAE-EAVRDAATLSATEALDNNVINLLADSPQDLLNKLNGQEVEVNQASV 215


>gi|116250938|ref|YP_766776.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|116243107|sp|Q1MK43|CLPP1_RHIL3 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|115255586|emb|CAK06667.1| putative ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 203

 Score = 42.7 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 66/196 (33%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D+    +  ++  +  ++S   + + ++SPGG   +G A++  ++ ++   
Sbjct: 33  IIFLNGEVNDTVSALVCAQLLFLEAENSKKPINLYINSPGGVVTSGLAMYDTMRFIRAPV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                         + +   +   + +   + G  G     P     + +     +    
Sbjct: 93  --------------HTLCMGTARSMGSFLLMAGEAGGRAALPNASILIHQPSGGFQG--- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +  + +  +     RL +E     Y+     +   R  T  
Sbjct: 136 -------------QASDMMIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAE 182

Query: 217 EAKKVGLIDVVGGQEE 232
           EA + GLID +    E
Sbjct: 183 EALEWGLIDRILTVRE 198


>gi|158317029|ref|YP_001509537.1| ATP-dependent Clp protease proteolytic subunit [Frankia sp.
           EAN1pec]
 gi|158112434|gb|ABW14631.1| Endopeptidase Clp [Frankia sp. EAN1pec]
          Length = 214

 Score = 42.7 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 31/181 (17%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +  +D    + + ++SPGGS  +  AI+  +Q V+     I      +
Sbjct: 51  TSANDVMAQLLFLESEDPDRDISIYINSPGGSFTSLTAIYDTMQFVRPDIQTICMGQAAS 110

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L +       A + S +       Q       ++                     
Sbjct: 111 AAAVLLAAGTPGKRFALQNSRILIHQPSAQGEGQSSDIE--------------------- 149

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226
                    +    +         +++E      +     +   +I++  EAK  G+ID 
Sbjct: 150 ---------IQAREILRMRSLLEHMLAEHTGRTEEAVRKDIERDKIFSADEAKDYGIIDE 200

Query: 227 V 227
           V
Sbjct: 201 V 201


>gi|296112317|ref|YP_003626255.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis RH4]
 gi|295920011|gb|ADG60362.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis RH4]
          Length = 217

 Score = 42.7 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED+    ++ ++  +  D+    + + ++SPGG   AG AI+  +  +K   
Sbjct: 49  VIFLTGQVEDNMANLIVAQLLFLEADNPEKDIHLYINSPGGVVTAGMAIYDTMNFIKPHV 108

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +       A   S V     L  +      ++     I  +  
Sbjct: 109 STICMGQAASMGSFLLSAGEKGKRYALANSRVMIHQPLGGFRGQASDIEIHAREIIEL-- 166

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                            RL++E    P +K           +  
Sbjct: 167 ----------------------------KAKLNRLLAEHTGQPIEKLERDTDRDHFMSAE 198

Query: 217 EAKKVGLIDVVGG 229
           +A+  GL+DVV  
Sbjct: 199 QARDYGLVDVVLD 211


>gi|118474160|ref|YP_892812.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118413386|gb|ABK81806.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 196

 Score = 42.7 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+IED+    ++ ++  +  +D    + + ++SPGG   +G +I+  +  +K   
Sbjct: 30  IIMLSGEIEDAMASAIVAQMLFLEAEDPDKDIYLYINSPGGVVTSGFSIYDTMNYIKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L         A   S +     L         ++           
Sbjct: 90  CTICIGQAASMGAFLLSCGTKGKRYALPNSRIMIHQPLGGARGQATDIE----------- 138

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                              +    +          ++++      K    +D   + +  
Sbjct: 139 -------------------IQAKEILRLKEVLNSTLAKNTGQKLAKIAKDTDRDFFMSAH 179

Query: 217 EAKKVGLIDVV 227
           EA + GLID V
Sbjct: 180 EAAEYGLIDNV 190


>gi|260427575|ref|ZP_05781554.1| Clp protease [Citreicella sp. SE45]
 gi|260422067|gb|EEX15318.1| Clp protease [Citreicella sp. SE45]
          Length = 210

 Score = 42.7 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 23/200 (11%), Positives = 61/200 (30%), Gaps = 33/200 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++ A  + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 38  IIFVSGPVHDGMSSLIVAQLLHLEAENPAKEISMYINSPGGVVTSGLSIYDTMQYIKPKI 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +  + +  +   S +        Y                   
Sbjct: 98  STLVIGQAASMGSLLLTAGEAGMRFSLPNSRIMVHQPSGGYQGQ---------------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            + +  +           +         +K    L      +  
Sbjct: 142 --------------ATDIMIHAEETLKLKRRLNEIYVRHTGQTLEKVEAALERDNFMSPE 187

Query: 217 EAKKVGLIDVVGGQEEVWQS 236
           +AK+ GLID +       ++
Sbjct: 188 DAKEWGLIDEIVESRGAAEA 207


>gi|123969397|ref|YP_001010255.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
           AS9601]
 gi|126697184|ref|YP_001092070.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9301]
 gi|123199507|gb|ABM71148.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
           AS9601]
 gi|126544227|gb|ABO18469.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9301]
          Length = 214

 Score = 42.7 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 60/179 (33%), Gaps = 31/179 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           S  L+ ++  +  +D    + + ++SPGGS  AG AI+  +Q++      I      +  
Sbjct: 63  SDSLVAQLLFLEAEDPEKDIQIYINSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMG 122

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L   A    +A   S +     L         ++                       
Sbjct: 123 AFLLSGGAKGKRLALPNSRIMIHQPLGGAQGQAVEIE----------------------- 159

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                  +    +         L++E    P +K    ++   + + +EA + GLID V
Sbjct: 160 -------IQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEAVEYGLIDKV 211


>gi|115359135|ref|YP_776273.1| hypothetical protein Bamb_4387 [Burkholderia ambifaria AMMD]
 gi|115284423|gb|ABI89939.1| protein of unknown function DUF107 [Burkholderia ambifaria AMMD]
          Length = 525

 Score = 42.7 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 23/201 (11%), Positives = 55/201 (27%), Gaps = 11/201 (5%)

Query: 38  VARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI----- 90
           V  I + G I    +  ++  +ER + D +  A+ + L +PGG   +   I +AI     
Sbjct: 60  VIVIPVNGAIGPASADFIVRSLERAAHDHAPLAI-LQLDTPGGLDTSMRQIIKAILGSPV 118

Query: 91  --QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
                                    ++  +        S V                   
Sbjct: 119 PVAAFVAPGGARAASAGTYIVYASHVAAMAPGTNLGAASPVQFGIGGGAPGTPGTPGTPR 178

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVL 207
                +  +       S    +                  ++R +++ R    +     +
Sbjct: 179 PSPAGTSGAGGASGASSTPVALPNDTQSTEIRKATQDAAAYIRGLAQLRGRNAEWAERAV 238

Query: 208 SDGRIWTGAEAKKVGLIDVVG 228
            +    +  EA+   ++D++ 
Sbjct: 239 REAVSLSANEARAQHVVDLIA 259


>gi|289192055|ref|YP_003457996.1| protein of unknown function DUF114 [Methanocaldococcus sp.
           FS406-22]
 gi|288938505|gb|ADC69260.1| protein of unknown function DUF114 [Methanocaldococcus sp.
           FS406-22]
          Length = 281

 Score = 42.7 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 71/182 (39%), Gaps = 12/182 (6%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            IEDS+E++  I    +D     +I    +PGG   A   I +A++       VI   + 
Sbjct: 72  TIEDSEEILRAIRTAPKDKPIDLII---HTPGGLVLAATQIAKALKAHPAETRVIVPHYA 128

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIG-VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164
           M+   G LI+ A++ I+  E +++G +   L QYP            +  V    +    
Sbjct: 129 MSG--GTLIALAADKIIMDENAVLGPVDPQLGQYPAPSIVKAVEQKGVDKVDDQTLILAD 186

Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL- 223
                +N     +   + D       + +S+       +    +     T  EAKK+GL 
Sbjct: 187 IAKKAINQVQNFVYSLLKDKYGEEKAKELSK----TLTEGR-WTHDYPITVEEAKKLGLD 241

Query: 224 ID 225
           +D
Sbjct: 242 VD 243


>gi|257126078|ref|YP_003164192.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leptotrichia
           buccalis C-1013-b]
 gi|257050017|gb|ACV39201.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia
           buccalis C-1013-b]
          Length = 203

 Score = 42.7 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED  +  ++ ++  +   D+   +++ ++SPGG   AG AI+  ++ +K+  
Sbjct: 42  IIFVSGEVEDGMANAIVAQLLFLDAQDNEKDIVMYINSPGGVITAGLAIYDTMRHIKSDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A     +   S +     L                      
Sbjct: 102 STVCVGQAASMGAVLLSAGAKGKRYSLPNSRIMIHQPLG--------------------- 140

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                      +                     +++SE+     ++           +  
Sbjct: 141 GARGQATDIQIQAKEIERM---------KEITSKILSEATGKSVEEIYADTERDNFMSPE 191

Query: 217 EAKKVGLIDVV 227
           EA   GLID +
Sbjct: 192 EAVNYGLIDKI 202


>gi|330948407|gb|EGH48667.1| peptidase S49, SppA [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 85

 Score = 42.7 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 2/85 (2%)

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           V          +DKLGV  ++  S   KA   PF        Q  Q V+D+++  F+  V
Sbjct: 1   VTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFWQGVLDTTHRQFIASV 60

Query: 194 SESRNIPYDKTL--VLSDGRIWTGA 216
            + R           L  G IWTG 
Sbjct: 61  KQGRGDRLKDKEHPELFSGLIWTGE 85


>gi|212224654|ref|YP_002307890.1| hypothetical protein TON_1503 [Thermococcus onnurineus NA1]
 gi|212009611|gb|ACJ16993.1| Hypothetical protein TON_1503 [Thermococcus onnurineus NA1]
          Length = 280

 Score = 42.7 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 67/203 (33%), Gaps = 25/203 (12%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+E++  I    +D     +I    +PGG   A   I RA++       VI   + M
Sbjct: 74  IEDSEEILRAIRMAPKDKPIDLII---HTPGGLVLAATQIARALKDHPAETRVIVPHYAM 130

Query: 107 AASAGYLISCASNIIVAAETSLVGSIG-VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           +   G LI+ A++ I+    +++G +   L QYP               V    +     
Sbjct: 131 SG--GTLIALAADKIIMDPHAVLGPVDPQLGQYPGPSIVRAVEKKGPDKVDDQTLILADV 188

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAK 219
               +      +   + D                   +   +     WT         AK
Sbjct: 189 AEKAIKQVRDLVFDLLKDRYGEE-----------KAKELAQILTEGRWTHDYPITYEHAK 237

Query: 220 KVGLIDVVGGQEE--VWQSLYAL 240
           ++GL    G  EE      LY  
Sbjct: 238 ELGLHVETGVPEEVYALMELYKQ 260


>gi|254460423|ref|ZP_05073839.1| Clp protease [Rhodobacterales bacterium HTCC2083]
 gi|206677012|gb|EDZ41499.1| Clp protease [Rhodobacteraceae bacterium HTCC2083]
          Length = 210

 Score = 42.7 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 58/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++ +  + + ++SPGG   +G +I+  +Q ++ + 
Sbjct: 38  IIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIRPKV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +   ++  +   S V        Y                   
Sbjct: 98  STLVIGQAASMGSLLLTAGEKDMRFSLPNSRVMVHQPSGGYQGQ---------------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            + +              +  +       K    L      +  
Sbjct: 142 --------------ATDIMIHAQETQKLKTRLNEIYVQHTGQTLKKVEAALERDNFMSPE 187

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID +
Sbjct: 188 EAKEFGLIDEI 198


>gi|86605879|ref|YP_474642.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. JA-3-3Ab]
 gi|115311348|sp|Q2JV68|CLPP2_SYNJA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|86554421|gb|ABC99379.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. JA-3-3Ab]
          Length = 200

 Score = 42.7 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 58/180 (32%), Gaps = 31/180 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGGS YAG AI+  +Q ++     I      +  A  
Sbjct: 42  IVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFL 101

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L   A    +A   + +     L         ++     I  +                 
Sbjct: 102 LAGGAKGKRIALPHARIMIHQPLGGAQGPATDIEIQAKEILFI----------------- 144

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231
                         +    L++     P ++           T  +AK+ GLID V  + 
Sbjct: 145 -------------KNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKEYGLIDQVITRR 191


>gi|66044992|ref|YP_234833.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. syringae B728a]
 gi|71733685|ref|YP_273935.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|237803596|ref|ZP_04591181.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|257483815|ref|ZP_05637856.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|289627504|ref|ZP_06460458.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289649945|ref|ZP_06481288.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|289679415|ref|ZP_06500305.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. syringae FF5]
 gi|298486263|ref|ZP_07004326.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|301384120|ref|ZP_07232538.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059517|ref|ZP_07251058.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. tomato K40]
 gi|302135032|ref|ZP_07261022.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|302187983|ref|ZP_07264656.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. syringae 642]
 gi|38257468|sp|Q87YR6|CLPP_PSESM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|81308384|sp|Q4ZVM7|CLPP_PSEU2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|110816461|sp|Q48KZ0|CLPP_PSE14 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|63255699|gb|AAY36795.1| Peptidase S14, ClpP [Pseudomonas syringae pv. syringae B728a]
 gi|71554238|gb|AAZ33449.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|298159270|gb|EFI00328.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|320325361|gb|EFW81428.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320327654|gb|EFW83662.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330868375|gb|EGH03084.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330878772|gb|EGH12921.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
 gi|330882125|gb|EGH16274.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330889997|gb|EGH22658.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. mori str. 301020]
 gi|330897794|gb|EGH29213.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. japonica str. M301072PT]
 gi|330939706|gb|EGH43001.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. pisi str. 1704B]
 gi|330952797|gb|EGH53057.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae Cit 7]
 gi|330959387|gb|EGH59647.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. maculicola str. ES4326]
 gi|330963320|gb|EGH63580.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. actinidiae str. M302091]
 gi|330972589|gb|EGH72655.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. aceris str. M302273PT]
 gi|330985639|gb|EGH83742.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. lachrymans str. M301315]
 gi|331012679|gb|EGH92735.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331019229|gb|EGH99285.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
 gi|331025578|gb|EGI05634.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 213

 Score = 42.7 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 59/197 (29%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     +  ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 45  VIFMVGPVEDYMANLIAAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A         S +     L  +      +D     I  ++ 
Sbjct: 105 STICIGQACSMGAFLLAGGAEGKRHCLPNSRMMIHQPLGGFQGQASDIDIHAKEILHIRH 164

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L++       +            +  
Sbjct: 165 ------------------------------RLNSLLAHHTGQSLETIERDTERDNFMSAE 194

Query: 217 EAKKVGLIDVVGGQEEV 233
            A + GLID V  + ++
Sbjct: 195 RAAEYGLIDSVINKRQM 211


>gi|83954269|ref|ZP_00962989.1| Protease subunit of ATP-dependent Clp protease [Sulfitobacter sp.
           NAS-14.1]
 gi|83841306|gb|EAP80476.1| Protease subunit of ATP-dependent Clp protease [Sulfitobacter sp.
           NAS-14.1]
          Length = 219

 Score = 42.7 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 58/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++ +  + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 38  IIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +    +  +   S V        Y                   
Sbjct: 98  STLVIGQAASMGSLLLQAGEKGMRFSLPNSRVMVHQPSGGYQGQ---------------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            + +              +  +    P +K    L      +  
Sbjct: 142 --------------ATDIMIHAQETQKLKTRLNEIYVKHTGQPLEKVEAALERDNFMSPE 187

Query: 217 EAKKVGLIDVV 227
           EAK  GLID +
Sbjct: 188 EAKDWGLIDEI 198


>gi|67923459|ref|ZP_00516936.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
 gi|67854694|gb|EAM49976.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
          Length = 262

 Score = 42.7 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 63/185 (34%), Gaps = 31/185 (16%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  ++ ++  +  +D    + + ++SPGGS YAG AI+  +Q+++     I      +  
Sbjct: 97  ADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMG 156

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L        +A  +S +     L         ++     I  +              
Sbjct: 157 AFLLSGGTKGKRMALPSSRIMIHQPLGGAQGQAVEIEIQAKEILYI-------------- 202

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228
                                 +++E    P+D     ++   + +  EA   GLID V 
Sbjct: 203 ----------------KKRLNDMLAEHTGQPFDTIAADTERDFFMSAQEAVDYGLIDKVI 246

Query: 229 GQEEV 233
            + ++
Sbjct: 247 SRSDL 251


>gi|297571128|ref|YP_003696902.1| endopeptidase Clp [Arcanobacterium haemolyticum DSM 20595]
 gi|296931475|gb|ADH92283.1| Endopeptidase Clp [Arcanobacterium haemolyticum DSM 20595]
          Length = 238

 Score = 42.7 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 57/176 (32%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +  ++  ++ +D    + + ++SPGGS  AG AIF  +Q +K     +      +     
Sbjct: 70  ICAQLLLLAAEDPEKDIYLYINSPGGSVTAGMAIFDTMQYIKPDVATVGMGLAASMGQFL 129

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A         + V     L                                     
Sbjct: 130 LTAGAKGKRYITPHTRVLMHQPLGGAGG------------------------------TA 159

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
             +++  D++         L ++      ++ LV SD   W T  EA + G +D +
Sbjct: 160 TEIRINADLILQMKQELSELNAKHTGKSVEQILVDSDRDHWFTAREALEYGFVDHI 215


>gi|50120087|ref|YP_049254.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium
           atrosepticum SCRI1043]
 gi|60389567|sp|Q6D827|CLPP_ERWCT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|49610613|emb|CAG74058.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium
           atrosepticum SCRI1043]
          Length = 207

 Score = 42.7 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED     ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  IIFLTGQVEDYMANLVVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A    +    S V     L  +      ++           
Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L+++    P +         R  + +
Sbjct: 156 ------------------------ILKVKAKMNELMAKHTGQPLEAIERDTERDRFLSAS 191

Query: 217 EAKKVGLIDVV 227
           EA + GL+D V
Sbjct: 192 EAVEYGLVDSV 202


>gi|223042116|ref|ZP_03612288.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           minor 202]
 gi|240950344|ref|ZP_04754614.1| ATP-dependent Clp protease proteolytic subunit ClpP [Actinobacillus
           minor NM305]
 gi|223017093|gb|EEF15533.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           minor 202]
 gi|240295155|gb|EER45974.1| ATP-dependent Clp protease proteolytic subunit ClpP [Actinobacillus
           minor NM305]
          Length = 197

 Score = 42.7 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 61/195 (31%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED+    ++ ++  +  +D    + + ++SPGG   AG AI+  +  +K   
Sbjct: 29  IIFLNGQVEDNMANLIVAQLLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMNFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A     A   + V     L                      
Sbjct: 89  ATLCTGQACSMGAFLLSGGAKGKRFALPNARVMIHQPLGGARGQ---------------- 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                            +Q+    +        R ++E     +DK           +  
Sbjct: 133 --------------ATDIQIQAQEILKLKEMLTRKMAEHSGQSFDKVAADTERDNFMSAE 178

Query: 217 EAKKVGLIDVVGGQE 231
           EAK+ GLID V    
Sbjct: 179 EAKEYGLIDKVLTSR 193


>gi|254282219|ref|ZP_04957187.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
           proteobacterium NOR51-B]
 gi|219678422|gb|EED34771.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
           proteobacterium NOR51-B]
          Length = 220

 Score = 42.7 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q VK   
Sbjct: 50  VIFVVGGIEDHMANLIVAQLLFLESENPDKDIHIYINSPGGSVTAGLSIYDTMQFVKPDV 109

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         +                 ++           
Sbjct: 110 STMCIGQAASMGAFLLSGGAKGKRYILPNARTMIHQPSGGAQGQASDIE----------- 158

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                              +    +        RL+++      +         R  +  
Sbjct: 159 -------------------IQAKEILYLRERLNRLMADHTGQTLETIERDTERDRFMSAE 199

Query: 217 EAKKVGLIDVV 227
           ++ + GL+D V
Sbjct: 200 QSVEYGLVDEV 210


>gi|84515416|ref|ZP_01002778.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Loktanella
           vestfoldensis SKA53]
 gi|84510699|gb|EAQ07154.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Loktanella
           vestfoldensis SKA53]
          Length = 198

 Score = 42.7 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++    + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 29  IIFLNGPVHDGMSQLVVAQLLHLESENPKKEISMYINSPGGVVTSGLSIYDTMQYIKPK- 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                                + +V  + + +GS+ +   +P ++  L    V +     
Sbjct: 88  --------------------VSTLVIGQAASMGSLLLTAGHPGMRFSLPNSRVMVHQPSG 127

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             +  +    P  K    L      +  
Sbjct: 128 GYQGQATDIMIHAAETQK---------LKTRLNEIYVKHTGQPLKKVETALERDNFMSPE 178

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID +
Sbjct: 179 EAKEWGLIDEI 189


>gi|93007058|ref|YP_581495.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Psychrobacter
           cryohalolentis K5]
 gi|92394736|gb|ABE76011.1| ATP-dependent Clp protease proteolytic subunit ClpP [Psychrobacter
           cryohalolentis K5]
          Length = 231

 Score = 42.7 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG AIF  +  +K   
Sbjct: 63  VIFLTGQVEDHMANLIVAQLLFLEAENPDKDIHLYINSPGGSVSAGLAIFDTMNFIKPEV 122

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +       A   + V               ++           
Sbjct: 123 STICMGGAYSMGSFLLAAGEKGKRYALANARVMIHQPSGGAQGQATDIEINARE------ 176

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
                                   +  +      +++E    P DK     +   W    
Sbjct: 177 ------------------------ILKTRARLNEILAERTGQPVDKIEKDVERDYWLDAK 212

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 213 EAKEYGLIDEV 223


>gi|261822507|ref|YP_003260613.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium
           wasabiae WPP163]
 gi|261606520|gb|ACX89006.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Pectobacterium wasabiae WPP163]
          Length = 207

 Score = 42.7 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  IIFLTGQVEDHMANLVVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A    +    S V     L  +      ++           
Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L+++    P +         R  + +
Sbjct: 156 ------------------------ILKVKAKMNELMAKHTGQPLEAIERDTERDRFLSAS 191

Query: 217 EAKKVGLIDVV 227
           EA + GL+D V
Sbjct: 192 EAVEYGLVDSV 202


>gi|294635324|ref|ZP_06713821.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Edwardsiella
           tarda ATCC 23685]
 gi|291091300|gb|EFE23861.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Edwardsiella
           tarda ATCC 23685]
          Length = 194

 Score = 42.7 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 29  IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A         S V     L  +      ++     I S+K 
Sbjct: 89  STICMGQACSMGSFLLAAGAQGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILSIK- 147

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L+++    P +         R  +  
Sbjct: 148 -----------------------------ARMNTLMAKHSGQPLEVIERDTERDRFMSAQ 178

Query: 217 EAKKVGLIDVVGG 229
           EA   GL+D V  
Sbjct: 179 EAVDYGLVDAVLT 191


>gi|315654944|ref|ZP_07907849.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315490905|gb|EFU80525.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 288

 Score = 42.7 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 59/200 (29%), Gaps = 37/200 (18%)

Query: 40  RIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95
            + I G I +      ++   +     +  +  + + L+SPGG   A   I+  +     
Sbjct: 23  VLRINGVIAEESWLDDDITPTLFASELNAGSGPVTIWLNSPGGDVVAAARIYNMLLDYPG 82

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
           +  V   +  +AASA  +I+ A++ +  +  S++            K  L +    ++SV
Sbjct: 83  K--VTVNIDGIAASAASVIAMAASTVAMSPVSMLMIHNPATLAMGDKTELSRALDMLESV 140

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT- 214
                                             +        +   K   L D   W  
Sbjct: 141 ------------------------------KDSIINAYQLKTGLSRAKLSKLMDAETWMD 170

Query: 215 GAEAKKVGLIDVVGGQEEVW 234
              A  +G  D +       
Sbjct: 171 ARAAIDLGFADELLNGNRAL 190


>gi|217967156|ref|YP_002352662.1| protein of unknown function DUF107 [Dictyoglomus turgidum DSM
          6724]
 gi|217336255|gb|ACK42048.1| protein of unknown function DUF107 [Dictyoglomus turgidum DSM
          6724]
          Length = 423

 Score = 42.7 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 18 VTLTVVYFSWSSHVEDNSP-HVARIAIRGQIE-DSQELIERIERISRDDSATALIVSLSS 75
          +  T+++        +  P +V  I I+G IE      +E    +  + +A A I  + +
Sbjct: 4  ILYTILFSFLLLSFLNAQPQNVYVIPIKGTIELGLASFVE--RSLKENPNAKAFIFEIDT 61

Query: 76 PGGSAYAGEAIFRAIQKVKN 95
           GG   A   I  AI    N
Sbjct: 62 FGGRVDAAIRIRDAILSTPN 81


>gi|190570982|ref|YP_001975340.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213019499|ref|ZP_03335305.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|226706556|sp|B3CLB1|CLPP_WOLPP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|190357254|emb|CAQ54678.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212994921|gb|EEB55563.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 208

 Score = 42.7 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IED+    ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +    
Sbjct: 29  IIFVTGPIEDNMASVIVAQLLFLESENPDKDICMYINSPGGVVTAGLSIYDTMQYINPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L + A     +   S +        Y      ++     I  V  
Sbjct: 89  STLCIGQAASMGSLLLTAGAEGKRYSLPHSRIMIHQPSGGYHGQATDIEIHANEILRV-- 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216
                                            ++  +       K   + +  +     
Sbjct: 147 ----------------------------KKKLNQIYEKHTGNSLKKIEEMMERDKFMDPE 178

Query: 217 EAKKVGLIDVV 227
           EA K GLID V
Sbjct: 179 EAMKTGLIDRV 189


>gi|83858431|ref|ZP_00951953.1| ATP-dependent Clp protease, proteolytic subunit [Oceanicaulis
           alexandrii HTCC2633]
 gi|83853254|gb|EAP91106.1| ATP-dependent Clp protease, proteolytic subunit [Oceanicaulis
           alexandrii HTCC2633]
          Length = 207

 Score = 42.7 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 71/191 (37%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G IED  +  ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q +    
Sbjct: 37  IVFVTGPIEDHMASLMVAQLLFLESENPNKEIAMYINSPGGSVSAGLAIYDTMQYI--SC 94

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
           PV T    MAAS G L+  A +             G+ F  P  +  L +     +    
Sbjct: 95  PVATACVGMAASMGSLLLTAGDK------------GMRFATPNARIMLHQPSGGFRG--- 139

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
                            ++   + +         +  +    P +K     D   +    
Sbjct: 140 -------------TTADIERHGEDILKIKRRMNEIYVKHTGQPLEKVEKTLDRDFYMDAM 186

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 187 EAKEFGLIDHV 197


>gi|291236428|ref|XP_002738143.1| PREDICTED: caseinolytic peptidase, ATP-dependent, proteolytic
           subunit-like [Saccoglossus kowalevskii]
          Length = 231

 Score = 42.7 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 58/193 (30%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D     ++ ++  +  + +   + + ++SPGGS  AG  I+  +Q V    
Sbjct: 59  IICLMGPITDDLSSLVVAQLLFLQSESNKKPIHMYINSPGGSVTAGLGIYDTMQYVLPPI 118

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    + ++  L +    +  +   S +       Q          + +  + +  
Sbjct: 119 STWCVGQACSMASLLLCAGFPGMRYSLPNSRIMVHQPSGQA---HGQATDIQIQAEEILK 175

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                                        +    L  +    P D     +   +     
Sbjct: 176 MK---------------------------NQINNLYVKHTKQPLDFIAAAMERDKFMNPI 208

Query: 217 EAKKVGLIDVVGG 229
           EA++ GL+D V  
Sbjct: 209 EAEEFGLVDKVLD 221


>gi|326561827|gb|EGE12162.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis 7169]
 gi|326563259|gb|EGE13526.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis 46P47B1]
 gi|326563373|gb|EGE13638.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis 12P80B1]
 gi|326565911|gb|EGE16072.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis 103P14B1]
 gi|326568952|gb|EGE19021.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis BC1]
 gi|326569251|gb|EGE19312.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis BC7]
 gi|326571926|gb|EGE21931.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis BC8]
 gi|326575439|gb|EGE25364.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis 101P30B1]
 gi|326576473|gb|EGE26381.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis CO72]
 gi|326577944|gb|EGE27808.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis O35E]
          Length = 217

 Score = 42.7 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED+    ++ ++  +  D+    + + ++SPGG   AG AI+  +  +K   
Sbjct: 49  VIFLTGQVEDNMANLIVAQLLFLEADNPEKDIHLYINSPGGVVTAGMAIYDTMNFIKPHV 108

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +       A   S V     L  +      ++     I  +  
Sbjct: 109 STICMGQAASMGSFLLSAGEKGKRYALANSRVMIHQPLGGFRGQASDIEIHAREIIEL-- 166

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                            RL++E    P +K           +  
Sbjct: 167 ----------------------------KAKLNRLLAEHTGQPIEKLERDTDRDHFMSAE 198

Query: 217 EAKKVGLIDVVGG 229
           +A+  GL+DVV  
Sbjct: 199 QARDYGLVDVVLD 211


>gi|254409743|ref|ZP_05023524.1| Clp protease [Microcoleus chthonoplastes PCC 7420]
 gi|196183740|gb|EDX78723.1| Clp protease [Microcoleus chthonoplastes PCC 7420]
          Length = 198

 Score = 42.7 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 62/187 (33%), Gaps = 33/187 (17%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            +  +I +  ++I  +  +  +D+   + + ++SPGGS  AG AI+  +Q +K+    I 
Sbjct: 38  EVDDEITN--QIIAVMLYLDSEDNNKDIYLYINSPGGSVTAGMAIYDTMQHIKSDVVTIC 95

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                +  +  L +      +A   S +               ++     I  +      
Sbjct: 96  VGLAASMGSFLLTAGKQGKRLALPHSRIMIHQPSGGVRGQATDIEIEAREILRI------ 149

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220
                                        ++ ++      +K     D   + +  EAK+
Sbjct: 150 ------------------------RRQLNQIYADKTGQTVEKIEKDIDRDFFMSAQEAKE 185

Query: 221 VGLIDVV 227
            GLID V
Sbjct: 186 YGLIDRV 192


>gi|149916365|ref|ZP_01904885.1| phosphoglycerate kinase [Roseobacter sp. AzwK-3b]
 gi|149809819|gb|EDM69671.1| phosphoglycerate kinase [Roseobacter sp. AzwK-3b]
          Length = 210

 Score = 42.7 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 57/191 (29%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++ A  + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 38  IIFVNGPVHDGMSSLIVAQLLHLEAENPAKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      AAS G L+  A    +                             I     
Sbjct: 98  STLVIGQ--AASMGSLLLTAGEKGMR-----FSLPNSRIMVHQPSGGYQGQATDIMIHAE 150

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
             +K                             ++  +       K    L      +  
Sbjct: 151 ETLK-----------------------LKKRLNQIYVKHTGQTLKKVEDALERDNFMSPE 187

Query: 217 EAKKVGLIDVV 227
           EAK  GLID +
Sbjct: 188 EAKNWGLIDEI 198


>gi|320660346|gb|EFX27826.1| Head-tail preconnector protein GP5 (Contains: Scaffold protein GP6
           (Head protein GP6)) [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 119

 Score = 42.7 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 57/117 (48%)

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           + SPGG A         I +++ +KPV    ++ A SA  L++ A +  +  +TS +GSI
Sbjct: 1   MDSPGGQAAGAFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSI 60

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
           GV+  +      L + GV I  + S   K + + F  +  +  Q MQ  +D++   F
Sbjct: 61  GVMMSHVSYAGHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMF 117


>gi|194366275|ref|YP_002028885.1| peptidase S14 ClpP [Stenotrophomonas maltophilia R551-3]
 gi|194349079|gb|ACF52202.1| peptidase S14 ClpP [Stenotrophomonas maltophilia R551-3]
          Length = 280

 Score = 42.7 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 76/240 (31%), Gaps = 37/240 (15%)

Query: 44  RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103
            G    ++ +   +  I        ++V+++SPGG  + G AI+  +++ +    V  +V
Sbjct: 55  EGTGVTAKRISAALRAIGD----KDVVVNINSPGGDFFEGVAIYNLLREHQ--GRVTVQV 108

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
             +AASA  +I+ A + I+  + S +            +  +      ++   ++  K  
Sbjct: 109 MGLAASAASVIAMAGDEILMGDGSFLMIHNAWAVAIGNRHDMADAAKLLEPFDTAMAKVY 168

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA-EAKKVG 222
                                         +    +   +   + D   W GA +A + G
Sbjct: 169 ------------------------------AARSGVTEAEAARMMDEETWIGAAQAVEDG 198

Query: 223 LIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282
             D +       +        +    + +    K      ++  ++ SL        +  
Sbjct: 199 FADGLLDGAAATKDAKQPSGGRKALALVEAAMAKAGHSRSMRRDTLKSLFNGKPSAAESA 258


>gi|304389877|ref|ZP_07371836.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304327053|gb|EFL94292.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 221

 Score = 42.7 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 63/205 (30%), Gaps = 37/205 (18%)

Query: 30  HVEDNSPHVARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
             + ++  V  + I G I +      ++   I     +  +  + + L+SPGG   A   
Sbjct: 14  TNDLDADVVRVLRISGTIAEESWFDDDVTPSIFASELNAGSGPVTIWLNSPGGDVVAAAQ 73

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I+  +    +   V   +  +AASA  +I+ A++ +  +  S++            K  L
Sbjct: 74  IYNMLIDYPS--HVTVNIDGIAASAASVIAMAASTVAMSPVSMLMIHNPATMAVGDKDEL 131

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
            +    + SV                                  +    E   +   K  
Sbjct: 132 ARAMSMLDSV------------------------------KESILNAYQEKTGMSRAKLS 161

Query: 206 VLSDGRIWT-GAEAKKVGLIDVVGG 229
            L D   W     A  +G  D +  
Sbjct: 162 KLMDAETWMDARAAIDMGFADELLT 186


>gi|229586800|ref|YP_002845301.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia africae
           ESF-5]
 gi|228021850|gb|ACP53558.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia africae
           ESF-5]
          Length = 216

 Score = 42.7 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 29/187 (15%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  ++    + + ++SPGG   AG AI+  +Q +K +   +      A S G 
Sbjct: 59  IVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQ--ACSMGS 116

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L+ C     +                             I+      +K +       + 
Sbjct: 117 LLLCGGEKGMR-----YSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSK 171

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
              Q ++ +  S                             +  EAKK GL+D +    +
Sbjct: 172 HTEQELKHIEKSMERDN----------------------FMSPEEAKKFGLVDNILSSRD 209

Query: 233 VWQSLYA 239
               L  
Sbjct: 210 AMALLAK 216


>gi|91789402|ref|YP_550354.1| hypothetical protein Bpro_3548 [Polaromonas sp. JS666]
 gi|91698627|gb|ABE45456.1| protein of unknown function DUF107 [Polaromonas sp. JS666]
          Length = 453

 Score = 42.7 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 73/230 (31%), Gaps = 12/230 (5%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLS 74
           ++ L ++ +S  +  +  +P V  +   G I   ++  +   + +      A  +++ + 
Sbjct: 3   IIALLLILWSSLAVAQPAAPVV-VLTQSGAIGPANADYVQRGLAKAVEL-KAQLVVLKMD 60

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           +PGG   +   +   I+ +      +        +           + A+  + +     
Sbjct: 61  TPGGLDLS---MRTIIKDILASPVPVASFVAPEGARAASAGTYI--LYASHIAAMAPATN 115

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
           L     V            + K    K         +       +   D++ +       
Sbjct: 116 LGAATPVSIGPQSEPREPGAAKGKAEKEGDRASDAPSTTQSMTRKQTSDAAAYIRGLAQL 175

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
             RN  +     + +    +  EA K+ +IDV+    +V Q L  L   +
Sbjct: 176 RGRNADWAD-KAVREAVSLSAEEALKLNVIDVIAT--DVAQLLRQLDGRK 222


>gi|33862212|ref|NP_893773.1| Clp protease proteolytic subunit [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|67460514|sp|Q7UZK7|CLPP3_PROMP RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|33634430|emb|CAE20115.1| Clp protease proteolytic subunit [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 215

 Score = 42.7 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 31/179 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           S  L+ ++  +  +D    + + ++SPGGS  AG AI+  +Q++      I      +  
Sbjct: 62  SDSLVAQLLFLEAEDPHKDIQIYINSPGGSVTAGLAIYDTMQQISPDVVTICFGVAASMG 121

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L   A    +A   S +     L         ++                       
Sbjct: 122 AFLLSGGAKGKRLALPNSRIMIHQPLGGAQGQAVEIE----------------------- 158

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                  +    +         L+++  N   +K    ++   + +  EA + GLID V
Sbjct: 159 -------IQAKEILFLKKTLNSLLAKHTNQSLEKINEDTERDYFLSPEEAVEYGLIDKV 210


>gi|159039408|ref|YP_001538661.1| endopeptidase Clp [Salinispora arenicola CNS-205]
 gi|157918243|gb|ABV99670.1| Endopeptidase Clp [Salinispora arenicola CNS-205]
          Length = 213

 Score = 42.7 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 57/178 (32%), Gaps = 31/178 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +  ++  ++ +D    + + ++SPGGS Y+G AI+  +Q + N    +     MAAS G 
Sbjct: 53  ICAQLLLLAAEDPDRDINLWINSPGGSVYSGMAIYDTMQFIDNDVSTVA--MGMAASMGQ 110

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L+ CA                           +                           
Sbjct: 111 LLLCAGTKGKR-----YALPHARIMMHQPSGGMGG-----------------------TA 142

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGG 229
             + +  + +  +   F   V+        +    SD  R +T  EA   G ID V  
Sbjct: 143 SDIAIQAEQMLYTKRMFQERVAFHTGQSQAQIEADSDRDRWFTAQEAMDYGFIDKVIT 200


>gi|146305508|ref|YP_001185973.1| nodulation efficiency protein NfeD [Pseudomonas mendocina ymp]
 gi|145573709|gb|ABP83241.1| Nodulation efficiency protein NfeD [Pseudomonas mendocina ymp]
          Length = 481

 Score = 42.7 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 15/228 (6%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSS 75
           + L  +    S  V      V ++ + G I    +  L+  + +   D+ A  +++ + +
Sbjct: 28  LCLCALILCASVGVSAAPGAVVQLQVDGVIGPASADYLVRGLAKAV-DEGAQLVVIEIDT 86

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           PGG   A  AI +AI                 A++            A+  + +     L
Sbjct: 87  PGGLDTAMRAIIKAILASPIPVASYVAPGGARAASAGTYIL-----YASHVAAMTPGTNL 141

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                V   +       +       K E    ++ +      M     +    ++R ++ 
Sbjct: 142 GAATPVAIGMPGAPSQPE----GDDKGEKDKATQGDKGTGDAMTAKQVNDAAAYIRGLAN 197

Query: 196 SRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
            R    +     + +    +  EA +  +ID +    +    L  L  
Sbjct: 198 MRGRNAEWAEQAVREAVSLSAEEALEQKVIDYLA--RDTADLLRQLDG 243


>gi|28870881|ref|NP_793500.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213968834|ref|ZP_03396975.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. tomato T1]
 gi|28854130|gb|AAO57195.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213926437|gb|EEB59991.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. tomato T1]
          Length = 216

 Score = 42.7 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 59/197 (29%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     +  ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 48  VIFMVGPVEDYMANLIAAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 107

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A         S +     L  +      +D     I  ++ 
Sbjct: 108 STICIGQACSMGAFLLAGGAEGKRHCLPNSRMMIHQPLGGFQGQASDIDIHAKEILHIRH 167

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L++       +            +  
Sbjct: 168 ------------------------------RLNSLLAHHTGQSLETIERDTERDNFMSAE 197

Query: 217 EAKKVGLIDVVGGQEEV 233
            A + GLID V  + ++
Sbjct: 198 RAAEYGLIDSVINKRQM 214


>gi|313903081|ref|ZP_07836475.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466583|gb|EFR62103.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter subterraneus DSM 13965]
          Length = 199

 Score = 42.7 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I   I+D  +  +I ++  +  DD    + + ++SPGGS  +G AI+  +Q +K   
Sbjct: 29  IVFIGTPIDDVVANSVIAQLLFLQTDDPDRDISIYINSPGGSVDSGLAIYDTMQHIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L         A   S +       Q                    
Sbjct: 89  ATYCVGLAASMGAILLAGGTKGKRYALPHSRIMIHQPHSQVGG----------------- 131

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            V++  D +         ++++    P ++    ++   + T  
Sbjct: 132 -------------TAADVKIYADQLLKLRQVANEILAKHTGQPLERIERDTERDFFMTAE 178

Query: 217 EAKKVGLIDVV 227
           EAK+ G+ID V
Sbjct: 179 EAKEYGIIDHV 189


>gi|167768863|ref|ZP_02440916.1| hypothetical protein ANACOL_00180 [Anaerotruncus colihominis DSM
           17241]
 gi|167669035|gb|EDS13165.1| hypothetical protein ANACOL_00180 [Anaerotruncus colihominis DSM
           17241]
          Length = 432

 Score = 42.7 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 60/183 (32%), Gaps = 32/183 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAASAG 111
           L E ++ + +     ++ + ++S GG A     I   ++++       I  V  +A S G
Sbjct: 78  LSEFLDDLEQIAKCKSITIRMNSYGGDAGVSNTIHNRLRELARNGAELICVVDGVAMSGG 137

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
            LI CA + +    +SL+                               K     + + N
Sbjct: 138 SLIMCACDTVRVNPSSLIMI----------------------------HKCWSYIWGDYN 169

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQ 230
              ++ M D  D+     + +      +       +     + TG EA   G  D V   
Sbjct: 170 ADELRQMADQNDAWDKMQITIYKRKTGLSDTVLSHMMADTTYMTGKEAVDKGFADEV--L 227

Query: 231 EEV 233
           E+ 
Sbjct: 228 EDA 230


>gi|115380546|ref|ZP_01467508.1| protease IV [Stigmatella aurantiaca DW4/3-1]
 gi|115362447|gb|EAU61720.1| protease IV [Stigmatella aurantiaca DW4/3-1]
          Length = 95

 Score = 42.7 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
           +     +GR+++G      GL+D VG  EE  +        ++ R
Sbjct: 1   EIHARGEGRVYSGTRGLAAGLVDRVGSFEEACRYALERAGVKTER 45


>gi|114332326|ref|YP_748548.1| hypothetical protein Neut_2369 [Nitrosomonas eutropha C91]
 gi|114309340|gb|ABI60583.1| protein of unknown function DUF107 [Nitrosomonas eutropha C91]
          Length = 475

 Score = 42.7 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 84/224 (37%), Gaps = 18/224 (8%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVAR-IAIRGQIEDS--QELIERIERISRDDSATA 68
            ++   +   +++   S+     +  +A  + + G I  +    +   + R +    A  
Sbjct: 16  LLLAIFLWAGMLFAQPSNTATGAANGIAVWLDVNGAISPAMYDYIHRGLSRAAE-QQAQI 74

Query: 69  LIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +I+ + +PGG      + I   I         +      AASAG  I  AS+I   A  +
Sbjct: 75  VILQMDTPGGLDVSMRKIIQEIIASPIPVASFVAPSGARAASAGTYILYASHIAAMAPAT 134

Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV-NPKAVQMMQDVVDSSY 186
            +G+   +           K+G   + +K+   K E    + + +      M   V +  
Sbjct: 135 NLGAATPV-----------KIGAQSQEIKAPGHKPENERTNPIGSSGTQDAMTMKVINDA 183

Query: 187 HWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGG 229
             ++R ++  R+   D     + +G   T AEA    +ID++  
Sbjct: 184 AAYIRGLARMRDRNADWAEQAVREGVSLTSAEALDNNVIDLIAD 227


>gi|320094139|ref|ZP_08025952.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319978941|gb|EFW10471.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 214

 Score = 42.7 bits (98), Expect = 0.073,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 68/187 (36%), Gaps = 30/187 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D  + + + ++SPGGS  A  AI+  +Q +K +   +      +
Sbjct: 56  ASADDVMAQLLVLESQDPDSLITMYINSPGGSFTALTAIYDTMQYIKPQIQTVCLGQAAS 115

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L + +    +A   + V       +    +                         
Sbjct: 116 AAAVLLAAGSPGKRLALPNARVLIHQPAMEGMQGQA------------------------ 151

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226
                  +Q++ D +D    W    ++E    P ++    +   +I T  +A + GLID 
Sbjct: 152 -----SDIQIVADEIDRMRAWLEDTLAEHSGTPVEQVRRDIERDKILTAPQAAEYGLIDQ 206

Query: 227 VGGQEEV 233
           V    + 
Sbjct: 207 VLESRKA 213


>gi|17231317|ref|NP_487865.1| hypothetical protein alr3825 [Nostoc sp. PCC 7120]
 gi|17132959|dbj|BAB75524.1| alr3825 [Nostoc sp. PCC 7120]
          Length = 297

 Score = 42.7 bits (98), Expect = 0.073,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 71/183 (38%), Gaps = 14/183 (7%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            IEDS++++  I     D     ++    +PGG   A E I RA+ +   +  V   V  
Sbjct: 68  TIEDSEQILRAIRLTPPDVPIDLIL---HTPGGLVLATEQIARALIRHSAK--VTVFVPH 122

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
            A S G +++ A++ IV    +++G +            L  +           +  +  
Sbjct: 123 YAMSGGTMLALAADEIVMDANAVLGPVDPQLGNFPAASILKVVKDKP----IGEIDDQTL 178

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-----WTGAEAKK 220
             +++  KA+Q +Q  V +     +     +          L+ GR+      T  EA +
Sbjct: 179 IMADLAGKAIQQVQRFVRTLLKDNIPKQKVNPENIESIIEALTTGRVTHDYPITVEEATE 238

Query: 221 VGL 223
           +GL
Sbjct: 239 MGL 241


>gi|15669689|ref|NP_248502.1| hypothetical protein MJ_1495 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2496184|sp|Q58890|Y1495_METJA RecName: Full=Uncharacterized protein MJ1495
 gi|1592131|gb|AAB99506.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 292

 Score = 42.7 bits (98), Expect = 0.073,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 5/151 (3%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            IEDS+E++  I     D     +I    +PGG A A E I  A+++ K +  VI   + 
Sbjct: 81  TIEDSEEILRAIRLTPEDMPIDLII---HTPGGLALASEQIALALKEHKAKTTVIIPHYA 137

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           M+   G LI+ A++ I+  + +++G +            L+      + V    +     
Sbjct: 138 MSG--GSLIALAADEIIMDKNAVMGPVDPQIGQYPAASILEAYYRKGEKVSDETLILVDI 195

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
               +      + + + D       + +++ 
Sbjct: 196 SKKAIKQMEEFVYELLKDKYGDEKAKEIAKK 226


>gi|300715591|ref|YP_003740394.1| ATP-dependent Clp protease proteolytic subunit [Erwinia billingiae
           Eb661]
 gi|299061427|emb|CAX58539.1| ATP-dependent Clp protease proteolytic subunit [Erwinia billingiae
           Eb661]
          Length = 215

 Score = 42.3 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 62/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  ++ +K   
Sbjct: 50  IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMKFIKPDV 109

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +       A   S V     L  Y      ++           
Sbjct: 110 STICMGQACSMGAFLLTAGTKGKRYALPNSRVMIHQPLGGYQGQATDIEIHARE------ 163

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++E      ++        R  + +
Sbjct: 164 ------------------------ILKVKARMNELMAEHTGKTLEEIERDTERDRFLSAS 199

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D V  
Sbjct: 200 EAVEYGLVDSVLT 212


>gi|78780133|ref|YP_398245.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. MIT 9312]
 gi|115311352|sp|Q317Y6|CLPP4_PROM9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 4;
           AltName: Full=Endopeptidase Clp 4
 gi|78713632|gb|ABB50809.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. MIT 9312]
          Length = 219

 Score = 42.3 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 60/179 (33%), Gaps = 31/179 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           S  L+ ++  +  +D    + + ++SPGGS  AG AI+  +Q++      I      +  
Sbjct: 68  SDSLVAQLLFLEAEDPEKDIQIYINSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMG 127

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L   A    +A   S +     L         ++                       
Sbjct: 128 AFLLSGGAKGKRLALPNSRIMIHQPLGGAQGQAVEIE----------------------- 164

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                  +    +         L++E    P +K    ++   + + +EA + GLID V
Sbjct: 165 -------IQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEAVEYGLIDKV 216


>gi|145628436|ref|ZP_01784237.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 22.1-21]
 gi|145633845|ref|ZP_01789567.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 3655]
 gi|145637965|ref|ZP_01793604.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittHH]
 gi|145639474|ref|ZP_01795079.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittII]
 gi|148826642|ref|YP_001291395.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittEE]
 gi|148827882|ref|YP_001292635.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittGG]
 gi|229845547|ref|ZP_04465675.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 6P18H1]
 gi|229847178|ref|ZP_04467282.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 7P49H1]
 gi|260583375|ref|ZP_05851146.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
           influenzae NT127]
 gi|319775445|ref|YP_004137933.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae F3047]
 gi|166201826|sp|A5UE11|CLPP_HAEIE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201827|sp|A5UHJ6|CLPP_HAEIG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|144980211|gb|EDJ89870.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 22.1-21]
 gi|144985287|gb|EDJ92126.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 3655]
 gi|145268831|gb|EDK08795.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittHH]
 gi|145271521|gb|EDK11433.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittII]
 gi|148716802|gb|ABQ99012.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittEE]
 gi|148719124|gb|ABR00252.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittGG]
 gi|229809854|gb|EEP45576.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 7P49H1]
 gi|229811563|gb|EEP47264.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 6P18H1]
 gi|260093580|gb|EEW77497.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
           influenzae NT127]
 gi|309751687|gb|ADO81671.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haemophilus
           influenzae R2866]
 gi|309973789|gb|ADO96990.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haemophilus
           influenzae R2846]
 gi|317450036|emb|CBY86250.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae F3047]
          Length = 193

 Score = 42.3 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED     ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  VIFLSGEVEDRMANLIVAQLLFLESEDPTKDINIYINSPGGSVTAGMAIYDTMQFIKPDI 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L    +    A   + V     L  +                   
Sbjct: 89  RTLCIGQACSMGAFLLAGGTAGKRAALPNARVMIHQPLGGFRGQ---------------- 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            +Q+    +    H     ++       ++    +D   + +  
Sbjct: 133 --------------ASDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDTDRDNFMSAE 178

Query: 217 EAKKVGLIDVV 227
           EA+  GL+D V
Sbjct: 179 EAQAYGLVDEV 189


>gi|320164411|gb|EFW41310.1| ATP-dependent Clp protease proteolytic subunit [Capsaspora
           owczarzaki ATCC 30864]
          Length = 257

 Score = 42.3 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 64/197 (32%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+DS    ++ ++  +  D+    + + ++SPGG   AG AI+  +Q V++  
Sbjct: 87  IICLMGPIDDSTASVIVGQLLFLEGDNPLKPIHMYINSPGGVVTAGMAIYDTMQYVQSPV 146

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A         + V     L                      
Sbjct: 147 STICMGQAASMGSLILAAGAKGQRFILPHARVMIHQPLGGAQGQ---------------- 190

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            + +    +        R+  E    P  +    ++   +    
Sbjct: 191 --------------ASDIAIQAREILKMREMLNRIYVEHTGQPLKRIEDATERDYFMNPE 236

Query: 217 EAKKVGLIDVVGGQEEV 233
           EAK+ G+ID V  + ++
Sbjct: 237 EAKEFGIIDQVIQKRDI 253


>gi|255323211|ref|ZP_05364346.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           showae RM3277]
 gi|255299734|gb|EET79016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           showae RM3277]
          Length = 196

 Score = 42.3 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+IED  +  ++ ++  +  +D    + + ++SPGG   +G +I+  +  +K   
Sbjct: 30  IIMLSGEIEDGMASAIVAQMLFLEAEDPDKDIYLYINSPGGVITSGFSIYDTMNYIKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     A   S +     L         ++           
Sbjct: 90  CTICIGQAASMGAFLLSCGAQGKRYALPNSRIMIHQPLGGARGQATDIE----------- 138

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                              +    +         +++++      K    +D   + + A
Sbjct: 139 -------------------IQAKEILRMKEILNAILAKNTGQKLAKIQKDTDRDFFMSSA 179

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 180 EAKEYGLIDKV 190


>gi|238919011|ref|YP_002932525.1| ATP-dependent Clp protease, proteolytic subunit ClpP, [Edwardsiella
           ictaluri 93-146]
 gi|259585951|sp|C5BCJ6|CLPP_EDWI9 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|238868579|gb|ACR68290.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Edwardsiella ictaluri 93-146]
          Length = 206

 Score = 42.3 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 41  IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDV 100

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A         S V     L  +      ++     I S+K 
Sbjct: 101 STICMGQACSMGSFLLAAGAQGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILSIK- 159

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L+++    P +         R  +  
Sbjct: 160 -----------------------------ARMNTLMAKHSGQPIEVIERDTERDRFMSAQ 190

Query: 217 EAKKVGLIDVVGG 229
           +A + GL+D V  
Sbjct: 191 DAVEYGLVDAVLT 203


>gi|223040072|ref|ZP_03610353.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           rectus RM3267]
 gi|222878658|gb|EEF13758.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           rectus RM3267]
          Length = 196

 Score = 42.3 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+IED  +  ++ ++  +  +D    + + ++SPGG   +G +I+  +  +K   
Sbjct: 30  IIMLSGEIEDGIASAIVAQMLFLEAEDPDKDIYLYINSPGGVITSGFSIYDTMNYIKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     A   S +     L         ++           
Sbjct: 90  CTICIGQAASMGAFLLSCGAQGKRYALPNSRIMIHQPLGGARGQATDIE----------- 138

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                              +    +         +++++      K    +D   + + A
Sbjct: 139 -------------------IQAKEILRMKEILNAILAKNTGQKLAKIQKDTDRDFFMSSA 179

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 180 EAKEYGLIDKV 190


>gi|114563762|ref|YP_751275.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           frigidimarina NCIMB 400]
 gi|122299288|sp|Q07ZX8|CLPP_SHEFN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|114335055|gb|ABI72437.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
           frigidimarina NCIMB 400]
          Length = 203

 Score = 42.3 bits (97), Expect = 0.076,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 53/180 (29%), Gaps = 31/180 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +     + + ++SPGGS  AG AI+  +Q +K     +      +  A  
Sbjct: 53  IVAQLLFLESESPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCMGQAASMGAFL 112

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L   A         S V     L  +      +      I  +                 
Sbjct: 113 LAGGAKGKRHCLPNSRVMIHQPLGGFQGQASDIAIHAKEILGI----------------- 155

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231
                         +   ++++E    P D            +  +A + G++D +    
Sbjct: 156 -------------KNKLNQMLAEHTGQPLDIIERDTDRDNFMSATQAVEYGIVDSLLTSR 202


>gi|78485521|ref|YP_391446.1| ATP-dependent Clp protease proteolytic subunit [Thiomicrospira
           crunogena XCL-2]
 gi|110816468|sp|Q31GF1|CLPP_THICR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|78363807|gb|ABB41772.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thiomicrospira
           crunogena XCL-2]
          Length = 200

 Score = 42.3 bits (97), Expect = 0.076,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG AI+  ++ +K   
Sbjct: 36  VIFLVGQVEDHMANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGMAIYDTMRFIKPDV 95

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L + A     A   S V     L  +      ++     I  +K 
Sbjct: 96  STMCIGQAASMGSFLLSAGAEGKRYALPNSRVMIHQPLGGFQGQASDIEIHAKEIIQIKQ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              KA                               ++    P +            +  
Sbjct: 156 KLNKAL------------------------------ADHTGQPIEVIENDTDRDNFMSAD 185

Query: 217 EAKKVGLIDVVGGQE 231
           EA   GL+D V  + 
Sbjct: 186 EACDYGLVDKVLTRR 200


>gi|326519674|dbj|BAK00210.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 256

 Score = 42.3 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 57/191 (29%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++ A  + + ++SPGG   AG AI+  +Q +++  
Sbjct: 57  IVCIHGPIADDTASLVVAQLLFLESENPAKPIHLYINSPGGVVTAGLAIYDTMQYIRSPV 116

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L + A     A   + V                            
Sbjct: 117 TTLCIGQAASMGSLLLAAGAPGERRALPNARVMIHQPSGGASGQ---------------- 160

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +    +        ++ ++      D+    +         
Sbjct: 161 --------------ASDIAIQAKEILKVRDRLNKIYAKHTGQAIDRIEQCMERDMFMDPV 206

Query: 217 EAKKVGLIDVV 227
           EA   GLID V
Sbjct: 207 EAHAWGLIDEV 217


>gi|167750809|ref|ZP_02422936.1| hypothetical protein EUBSIR_01791 [Eubacterium siraeum DSM 15702]
 gi|167656244|gb|EDS00374.1| hypothetical protein EUBSIR_01791 [Eubacterium siraeum DSM 15702]
 gi|291530696|emb|CBK96281.1| ATP-dependent Clp protease proteolytic subunit ClpP [Eubacterium
           siraeum 70/3]
 gi|291557795|emb|CBL34912.1| ATP-dependent Clp protease proteolytic subunit ClpP [Eubacterium
           siraeum V10Sc8a]
          Length = 195

 Score = 42.3 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 56/176 (31%), Gaps = 29/176 (16%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +   D    + + ++SPGGS  AG AI+  +  +K     I      +  A  
Sbjct: 44  VVAQLLFLEGQDPDKDISLYINSPGGSISAGMAIYDTMNYIKCDVSTICVGMAASMGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L S A         S      V+   P +   L      I        K           
Sbjct: 104 LSSGAKGKRFCLPNS-----EVMIHQPLISGGLSGQQTDITIHAKYLEK----------- 147

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVV 227
                       +     ++++E+    Y++     +     +  EA   GL+D V
Sbjct: 148 ------------TRETLEKIMAENCGKSYEQLHKDCERDNFLSAEEACAYGLVDKV 191


>gi|288920827|ref|ZP_06415125.1| Endopeptidase Clp [Frankia sp. EUN1f]
 gi|288347786|gb|EFC82065.1| Endopeptidase Clp [Frankia sp. EUN1f]
          Length = 255

 Score = 42.3 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 61/186 (32%), Gaps = 33/186 (17%)

Query: 43  IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102
           +   I ++  +  ++  ++ +D    + + ++SPGGS  AG AI+  +Q V+N    ++ 
Sbjct: 88  VEDSIANA--ICAQLLLLNAEDPQRDIFLYINSPGGSVSAGMAIYDTMQYVENDVATVSL 145

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
               +     L + A     +   + +                                 
Sbjct: 146 GLAASMGQFLLCAGAPGKRYSLPHARIMMHQPSGGIGG---------------------- 183

Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKV 221
                       + +  + +  +       ++     P ++    SD  R +T  EAK  
Sbjct: 184 --------TASDIAIQAEQMLYTKRMMQERIAFHTGQPVEQIERDSDRDRWFTADEAKDY 235

Query: 222 GLIDVV 227
           G +D V
Sbjct: 236 GFVDHV 241


>gi|229176194|ref|ZP_04303685.1| Peptidase S14 ClpP [Bacillus cereus MM3]
 gi|228607289|gb|EEK64620.1| Peptidase S14 ClpP [Bacillus cereus MM3]
          Length = 241

 Score = 42.3 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 81/243 (33%), Gaps = 49/243 (20%)

Query: 41  IAIRGQIEDS---QEL-IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           I + G I +S   + +    I+R   +     + + ++S GGS + G +I+  +++  ++
Sbjct: 24  IYVYGTIGESWWEESVSANAIKRKLSNVKDGDIHLYINSFGGSVFDGISIYNQLKRHSSK 83

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
             VI  V  +AASA  LI+ A + I+    S++                        +  
Sbjct: 84  --VIVHVDGIAASAASLIAMAGDEIIMPANSMLMVH------------------RASTFA 123

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216
               +      + ++     +    +                   +   +L +    T  
Sbjct: 124 WGNREVFEQQLNALDKIDQSVTNTYMKRFV-----------GERSEMEELLKNETWLTAE 172

Query: 217 EAKKVGLIDVVGGQEE--------------VWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
           E K  GL D +  + E              + Q   A    ++ ++++    PK      
Sbjct: 173 ECKAFGLCDEIADETEEPNEQSSPEDVKNNLLQKYTARAEQKTPKQVEGVEEPKKPITNM 232

Query: 263 LKN 265
           + N
Sbjct: 233 MMN 235


>gi|320161999|ref|YP_004175224.1| hypothetical protein ANT_25980 [Anaerolinea thermophila UNI-1]
 gi|319995853|dbj|BAJ64624.1| hypothetical membrane protein [Anaerolinea thermophila UNI-1]
          Length = 447

 Score = 42.3 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 84/251 (33%), Gaps = 36/251 (14%)

Query: 1   MEFVLKKIKT-RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-QELIERIE 58
           +E V+ ++   R V+L L     +  +     + + P V  + + G +    QE ++R  
Sbjct: 3   VEDVMGRLNWVRLVVLGLFLWAWLGTASPMQAQSDVPVVVTVRLEGALNPIWQETLKRAM 62

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL--ISC 116
           R++ D  A ALI+ L +PGG       + + I+       V        A++        
Sbjct: 63  RVAEDRGAEALILQLDTPGGQIDVMNRLVQQIRNSPMPVVVYVSPAGAMAASAGAMLTLA 122

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
                +A ETS+  +  V  Q   +   ++                        +     
Sbjct: 123 GHASAMAPETSIGAASPVGGQGEDIGETME------------------------SKVKEI 158

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQ 235
           +       +       V            ++ + R  +  EA + GL+DV+      + +
Sbjct: 159 LKASARGLTLRRGETAV-------RLAEEMIENARAVSANEAVENGLVDVIASDLPTLLR 211

Query: 236 SLYALGVDQSI 246
            L  L V+   
Sbjct: 212 KLDGLSVEFGD 222


>gi|297279075|ref|XP_001109489.2| PREDICTED: calcium-activated chloride channel regulator 4-like
           [Macaca mulatta]
          Length = 931

 Score = 42.3 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 30/265 (11%), Positives = 71/265 (26%), Gaps = 21/265 (7%)

Query: 46  QIEDSQELIERIER-----------ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
            I  S++    I             +  +     L++  S           + +A +   
Sbjct: 275 VISSSEDFNNTIPMVTPPPPPVFSLLKINQRIVCLVLDKSGSMAGYDRLNQMNKAAKYFL 334

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYPYVKPFLDKLGVSIK 153
            +         M             I + +       +  L             +  + +
Sbjct: 335 LQIVENGSWVGMVHFDSTATIINKPIQIISSDERNTLLAWLPTYASGGTSICSGIKSAFQ 394

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW--FVRLVSESRNIPYDKTL--VLSD 209
            +       + S    +           +D        V  ++              ++ 
Sbjct: 395 VIGELSSHLDGSEVVLLTDGEDYTASSCIDEVKRSGAIVHFIALGTAADKAVIEMSKITG 454

Query: 210 GRIWTGAE-AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
           GR +  ++ A+  GLID  G        L    +    + +       N W  D   +  
Sbjct: 455 GRHFYASDKAQNNGLIDAFGDLTSGNTELSQKSLQLESKGLI---LNSNPWMNDTVIID- 510

Query: 269 SSLLEDTIPLMKQTKVQGLWAVWNP 293
           S++ +DT  L+   ++    ++W+P
Sbjct: 511 STVGKDTFFLITWNRLPPSISLWDP 535


>gi|282898110|ref|ZP_06306105.1| Peptidase S14, ClpP [Raphidiopsis brookii D9]
 gi|281197254|gb|EFA72155.1| Peptidase S14, ClpP [Raphidiopsis brookii D9]
          Length = 236

 Score = 42.3 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 68/191 (35%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  ++ ++  +  +D    + + ++SPGGS YAG AI+  IQ+++   
Sbjct: 59  IIFLGTAIDDNVANSIVAQLLFLDAEDPEKDVQLYINSPGGSVYAGMAIYDTIQQIRPDV 118

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +  +   ++   S +     L         ++     I  +  
Sbjct: 119 VTICFGLAASMGAFLLTAGTAGKRMSLPDSRIMIHQPLGGAQGQAIDIEIQAREILYI-- 176

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                            +L+S+    P ++    ++   + +  
Sbjct: 177 ----------------------------KANLNQLMSKHTGQPLERIEADTERDFFMSPQ 208

Query: 217 EAKKVGLIDVV 227
           EAK  GLID V
Sbjct: 209 EAKDYGLIDQV 219


>gi|251790648|ref|YP_003005369.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dickeya zeae
           Ech1591]
 gi|247539269|gb|ACT07890.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dickeya zeae
           Ech1591]
          Length = 207

 Score = 42.3 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +           S V     L  +      ++           
Sbjct: 102 STICMGQAASMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L+++    P +         R  + A
Sbjct: 156 ------------------------ILKVKARMNELMAKHTGQPLEMIERDTERDRFLSAA 191

Query: 217 EAKKVGLIDVVGGQEE 232
           EA   GL+D V    E
Sbjct: 192 EAVDYGLVDSVLTHRE 207


>gi|83943111|ref|ZP_00955571.1| Protease subunit of ATP-dependent Clp protease [Sulfitobacter sp.
           EE-36]
 gi|83846119|gb|EAP83996.1| Protease subunit of ATP-dependent Clp protease [Sulfitobacter sp.
           EE-36]
          Length = 211

 Score = 42.3 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 58/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++ +  + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 30  IIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +    +  +   S V        Y                   
Sbjct: 90  STLVIGQAASMGSLLLQAGEKGMRFSLPNSRVMVHQPSGGYQGQ---------------- 133

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            + +              +  +    P +K    L      +  
Sbjct: 134 --------------ATDIMIHAQETQKLKTRLNEIYVKHTGQPLEKVEAALERDNFMSPE 179

Query: 217 EAKKVGLIDVV 227
           EAK  GLID +
Sbjct: 180 EAKDWGLIDEI 190


>gi|271964885|ref|YP_003339081.1| endopeptidase Clp [Streptosporangium roseum DSM 43021]
 gi|270508060|gb|ACZ86338.1| Endopeptidase Clp [Streptosporangium roseum DSM 43021]
          Length = 192

 Score = 42.3 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 32/174 (18%)

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114
           E +   + DD  + + + ++SPGGS  AG AI+  +Q + N    +      +     L 
Sbjct: 39  ELLLLSAGDDR-SDIWLYINSPGGSVSAGMAIYDVMQYIPNDVATVGMGLAGSMGQFLLC 97

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
           + A     A   + +                                             
Sbjct: 98  AGAPGKRYALPHARIMMHQPSGGVGG------------------------------TASD 127

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVV 227
           + +  + +  +       ++     P ++     D  R +T  EAK  GL+D V
Sbjct: 128 IVIQAEQMLYTKQMMSERIAFHTGQPLEQIEEDWDRDRWFTATEAKDYGLVDEV 181


>gi|260913095|ref|ZP_05919577.1| ATP-dependent Clp protease [Pasteurella dagmatis ATCC 43325]
 gi|260632682|gb|EEX50851.1| ATP-dependent Clp protease [Pasteurella dagmatis ATCC 43325]
          Length = 193

 Score = 42.3 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED     ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  VIFLSGEVEDRMANLIVAQLLFLESEDPEKDINIYINSPGGSVTAGMAIYDTMQFIKPDI 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L    +   +A   + V     L  +                   
Sbjct: 89  RTLCVGQACSMGAFLLAGGTAGKRIALPNARVMIHQPLGGFRGQ---------------- 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            +Q+    +          ++       ++           +  
Sbjct: 133 --------------ASDIQIHAQEILKIKQTLNERLAFHTGQSIERIERDTDRDNFMSAE 178

Query: 217 EAKKVGLIDVV 227
           EAK  GL+D V
Sbjct: 179 EAKAYGLVDEV 189


>gi|163751869|ref|ZP_02159083.1| ATP-dependent Clp protease proteolytic subunit [Shewanella benthica
           KT99]
 gi|161328219|gb|EDP99383.1| ATP-dependent Clp protease proteolytic subunit [Shewanella benthica
           KT99]
          Length = 203

 Score = 42.3 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +E+  +  ++ ++  +  +     + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 38  IIFLVGPVEEHMANLVVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPDV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A+        S V     L      +     + +  + +  
Sbjct: 98  STVCIGQAASMGAFLLAGGAAGKRHCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILG 154

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
              K                                +E      +            + A
Sbjct: 155 IKDKLNQML---------------------------AEHTGQSLEVIERDTDRDNFMSAA 187

Query: 217 EAKKVGLIDVVGG 229
           +A + GLID V  
Sbjct: 188 QAAEYGLIDSVMS 200


>gi|319955770|ref|YP_004167033.1| ATP-dependent clp protease proteolytic subunit clpp [Nitratifractor
           salsuginis DSM 16511]
 gi|319418174|gb|ADV45284.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitratifractor
           salsuginis DSM 16511]
          Length = 196

 Score = 42.3 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 55/193 (28%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D+    ++ ++  +   D    +   ++SPGG   +G +I+  +  +K   
Sbjct: 29  IIMLSGEVNDAVASSIVAQLLFLEAQDPDKDIYFYINSPGGVITSGFSIYDTMNYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     A  +S +     L                      
Sbjct: 89  STICIGQAASMGAFLLACGAEGKRYALPSSRIMIHQPLG--------------------- 127

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                      +                        +E       K    ++   + +  
Sbjct: 128 GAQGQATDIAIQAKEILRMKTYLNKIL---------AEKTGKSVKKIEKDTERDYFMSAE 178

Query: 217 EAKKVGLIDVVGG 229
           EA++ GLID V  
Sbjct: 179 EAQEYGLIDKVLT 191


>gi|242399808|ref|YP_002995233.1| hypothetical protein TSIB_1833 [Thermococcus sibiricus MM 739]
 gi|242266202|gb|ACS90884.1| hypothetical protein TSIB_1833 [Thermococcus sibiricus MM 739]
          Length = 248

 Score = 42.3 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 69/178 (38%), Gaps = 11/178 (6%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+E++  I    +D     +I    +PGG   A   I +A++    +  VI   + M
Sbjct: 41  IEDSEEILRAIRMAPKDKPIDLII---HTPGGLVLAATQIAKALKDHPAKTRVIIPHYAM 97

Query: 107 AASAGYLISCASNIIVAAETSLVGSIG-VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           +   G LI+ A++ I+    +++G +   L QYP           SI  V+   +     
Sbjct: 98  SG--GTLIALAADEIIMDPHAVLGPVDPQLGQYPAPSIIKAVEQKSIDKVEDQTLILADV 155

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
               +N     +   + D       + +++            +     T   A+++GL
Sbjct: 156 AKKAINQVRDFVYHLLKDKYGEEKAKQLAQ-----VLTEGRWTHDYPITVEHARELGL 208


>gi|212640342|ref|YP_002316862.1| ATP-dependent Clp protease proteolytic subunit [Anoxybacillus
           flavithermus WK1]
 gi|226706440|sp|B7GL34|CLPP_ANOFW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|212561822|gb|ACJ34877.1| ATP-dependent Clp protease proteolytic subunit (class III
           heat-shock protein) [Anoxybacillus flavithermus WK1]
          Length = 196

 Score = 42.3 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 65/196 (33%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  ++ ++  ++ +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IIILGSPIDDHVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGMAIYDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   S +     L         ++           
Sbjct: 89  STICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGVQGQATEIEIAAKR------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +        R++SE+   P +            T  
Sbjct: 143 ------------------------ILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAE 178

Query: 217 EAKKVGLIDVVGGQEE 232
           +AK+ GLID V  + +
Sbjct: 179 KAKEYGLIDRVLTRVD 194


>gi|84494298|ref|ZP_00993417.1| ATP-dependent Clp protease proteolytic subunit [Janibacter sp.
           HTCC2649]
 gi|84383791|gb|EAP99671.1| ATP-dependent Clp protease proteolytic subunit [Janibacter sp.
           HTCC2649]
          Length = 219

 Score = 42.3 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 68/190 (35%), Gaps = 28/190 (14%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + ++I ++  +   D    +++ ++SPGGS  A  AI+  +Q ++            +
Sbjct: 58  ASADDVIAQLIVLESQDPDRDILMYINSPGGSFTAMTAIYDTMQYIRPDVQTFVIGQAAS 117

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L + A     A   + V       +                   +  M ++    
Sbjct: 118 AAAVLLGAGAPGKRYALPNARVLIHQPAIE------------------GTGGMASDLEIQ 159

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
           +    +    ++D + S     V LV +           +   +I + A+AK+ GLID V
Sbjct: 160 ANEVLRMRGWLEDTIASHSGRDVELVRK----------DIERDKILSAAQAKEYGLIDEV 209

Query: 228 GGQEEVWQSL 237
               +    +
Sbjct: 210 LASRKATNEV 219


>gi|127513436|ref|YP_001094633.1| ATP-dependent Clp protease proteolytic subunit [Shewanella loihica
           PV-4]
 gi|171855248|sp|A3QFX6|CLPP_SHELP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|126638731|gb|ABO24374.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
           loihica PV-4]
          Length = 203

 Score = 42.3 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 31/178 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +     + + ++SPGGS  AG AI+  +Q +K     +      +  A  
Sbjct: 53  IVAQLLFLESESPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFL 112

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L   A         S V     L      +     + +  + +     K           
Sbjct: 113 LAGGAKGKRHCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILGIKNKLNQML------ 163

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229
                                ++    P +            +  EA + GL+D V  
Sbjct: 164 ---------------------ADHTGQPLEVIERDTDRDNFMSATEAAEYGLVDSVLD 200


>gi|295105645|emb|CBL03189.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Faecalibacterium prausnitzii SL3/3]
          Length = 198

 Score = 42.3 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 54/176 (30%), Gaps = 26/176 (14%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +   D    + + ++SPGGS  AG AI   +Q +K     I      +  A  
Sbjct: 44  VVAQLLYLEGQDPDKDISLYINSPGGSISAGMAIHDTMQYIKCDVSTICMGMAASMGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L S       A   + +     L              + I                    
Sbjct: 104 LASGTKGKRFALPNAEIMIHQPLIGGQGGGLSGQTTDIKIH------------------- 144

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227
                  + +        R++SE    P +K           T  +AK+ GLID V
Sbjct: 145 ------AEHMVYIRDKMNRMLSEYTGQPLEKIQQDTERDNYLTAQQAKEYGLIDEV 194


>gi|269138347|ref|YP_003295047.1| protease subunit of ATP-dependent Clp protease [Edwardsiella tarda
           EIB202]
 gi|267984007|gb|ACY83836.1| protease subunit of ATP-dependent Clp protease [Edwardsiella tarda
           EIB202]
 gi|304558379|gb|ADM41043.1| ATP-dependent Clp protease proteolytic subunit [Edwardsiella tarda
           FL6-60]
          Length = 189

 Score = 42.3 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 24  IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDV 83

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A         S V     L  +      ++     I S+K 
Sbjct: 84  STICMGQACSMGSFLLAAGAQGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILSIK- 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L+++    P +         R  +  
Sbjct: 143 -----------------------------ARMNTLMAKHSGQPIEVIERDTERDRFMSAQ 173

Query: 217 EAKKVGLIDVVGG 229
           +A + GL+D V  
Sbjct: 174 DAVEYGLVDAVLT 186


>gi|145642383|ref|ZP_01797943.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae R3021]
 gi|145272926|gb|EDK12812.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 22.4-21]
          Length = 193

 Score = 42.3 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED     ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K+  
Sbjct: 29  VIFLSGEVEDRMANLIVAQLLFLESEDPTKDINIYINSPGGSVTAGMAIYDTMQFIKSDI 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L    +    A   + V     L  +                   
Sbjct: 89  RTLCIGQACSMGAFLLAGGTAGKRAALPNARVMIHQPLGGFRGQ---------------- 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            +Q+    +    H     ++       ++    +D   + +  
Sbjct: 133 --------------ASDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDTDRDNFMSAE 178

Query: 217 EAKKVGLIDVV 227
           EA+  GL+D V
Sbjct: 179 EAQAYGLVDEV 189


>gi|49475380|ref|YP_033421.1| ATP-dependent Clp protease proteolytic subunit [Bartonella henselae
           str. Houston-1]
 gi|67460276|sp|Q6G3Z3|CLPP_BARHE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|49238186|emb|CAF27396.1| ATP-dependent clp protease proteolytic subunit [Bartonella henselae
           str. Houston-1]
          Length = 210

 Score = 42.3 bits (97), Expect = 0.082,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 60/210 (28%), Gaps = 39/210 (18%)

Query: 40  RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G +ED   ++   ++  +  ++    + + ++SPGG   +G AI+  +Q ++   
Sbjct: 37  IIFINGPVEDGMAMLVCAQLLFLEAENPKKEISLYINSPGGVVTSGMAIYDTMQFIRPPV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L + A         + +                            
Sbjct: 97  STLCMGQAASMGSLLLTAGAKGHRFTLPNARIMVHQPSG--------------------- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                      + +          +         +  +     YD     L      T  
Sbjct: 136 -------GFQGQASDIERHA--QDIIKMKQRLNEIYVQHTGQNYDVIERTLDRDHFMTAE 186

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
           EAK+ GL+D      +V Q       ++  
Sbjct: 187 EAKQFGLVD------DVIQYRAETEKEEKD 210


>gi|300114147|ref|YP_003760722.1| hypothetical protein Nwat_1495 [Nitrosococcus watsonii C-113]
 gi|299540084|gb|ADJ28401.1| protein of unknown function DUF107 [Nitrosococcus watsonii C-113]
          Length = 465

 Score = 42.3 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 70/229 (30%), Gaps = 17/229 (7%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
           FV       +++ SLV L +     +   ++ +     + +RG I  +    + I+R   
Sbjct: 6   FVFTSKWYFWILGSLVCLFLGGAVPAQQNQNLAGTALLLDVRGVIGPATS--DYIQRTMA 63

Query: 63  DDSATA---LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119
             +      +I+ + +PGG   A   I + +                 A++       ++
Sbjct: 64  KSNTEGAALIILRMDTPGGLDTAMREIIQDVLASPVPVVGYVAPSGARAASAGTYIMYAS 123

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179
            I A   +           P       +     +  ++     +      +N        
Sbjct: 124 HIAAMAPATNLGAATPVHLPMGSQPPGEATPPGEGEEAGTPPKDTLARKAINDAVAY--- 180

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
                        V   RN  + +   + +    +  EA ++ +ID++ 
Sbjct: 181 --------IKGLAVQRGRNERWAE-KAVREAASLSAQEALEMEVIDLIA 220


>gi|330448246|ref|ZP_08311894.1| nfeD-like family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492437|dbj|GAA06391.1| nfeD-like family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 473

 Score = 42.3 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 83/281 (29%), Gaps = 30/281 (10%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATAL 69
            +    + + ++ FS    V      V  I I+G I    S  +   I     + +A  +
Sbjct: 4   VIRFLFMCVMLLGFSA---VAQTQQEVWVIGIKGGIGPATSDYVTREISEAQNN-NAAMI 59

Query: 70  IVSLSSPGGSAYAGEAIFRAI----------------QKVKNRKPVITEVHEMAASAGYL 113
           I+ + +PGG   +   I +AI                +       ++   H    + G  
Sbjct: 60  ILQVDTPGGLDTSMRQIIQAITVSPVPIATWVGPAGSRAASAGTYILLASHIATMADGTN 119

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           +  A+ + +    +    +    +        +       S +           +     
Sbjct: 120 LGAATPVSIGGGKAGSNPLSGSDEDKPTNTSDNPQNKQSNSEEKQNSAENDKEPTAETNS 179

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEE 232
           +  M   V++ +  +   L       P      + +        A K  +ID +   +E+
Sbjct: 180 SSAMESKVINDAAAYIESLAKLHNRNPEWAIKAVREAASIDAQTALKENVIDFIAQNREQ 239

Query: 233 VWQSL----YALGVDQ---SIRKIKDWNPPKNYWFCDLKNL 266
           V +        L   +    +  +      +++ F  L  L
Sbjct: 240 VIEKANGRMVKLNGVETPIELTNVSFIEREQDWRFKLLSVL 280


>gi|291550775|emb|CBL27037.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus
           torques L2-14]
          Length = 193

 Score = 42.3 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 56/181 (30%), Gaps = 31/181 (17%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  ++ ++  +  DD    + + ++SPGGS  AG AI+  +Q +K     +      +
Sbjct: 39  VSASVIVAQLLFLEADDPDKDIQLYINSPGGSVTAGLAIYDTMQYIKCDVSTVCIGMAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L         A   + +            +    ++ ++ + +  +  K      
Sbjct: 99  MGAFLLSGGKKGKRFALPNAEIMIHQPSG---GAQGQATEIQIAAEHILRTKKKLNEIL- 154

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226
                                     + +   P +            +  EAK+ GLID 
Sbjct: 155 --------------------------AANTGKPLEVIQQDTERDNFMSAEEAKEYGLIDE 188

Query: 227 V 227
           V
Sbjct: 189 V 189


>gi|227510637|ref|ZP_03940686.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227513652|ref|ZP_03943701.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           buchneri ATCC 11577]
 gi|227524797|ref|ZP_03954846.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           hilgardii ATCC 8290]
 gi|227083168|gb|EEI18480.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           buchneri ATCC 11577]
 gi|227088053|gb|EEI23365.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           hilgardii ATCC 8290]
 gi|227190289|gb|EEI70356.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 214

 Score = 42.3 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 59/193 (30%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IED     +I ++  +   DS   + + ++SPGG   +G AIF  +  VK   
Sbjct: 46  IIMLSGPIEDDMANAIIAQLLFLDAQDSEKDIYLYINSPGGVITSGMAIFDTMNFVKADV 105

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++    S A     A   + V            +  ++           
Sbjct: 106 QTIVMGMAASMASVLASSGAKGKRFALPHAQVLIHQPSGGAQGQQTEIEIAAEE------ 159

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                                   +  +      L++++   P +K           T  
Sbjct: 160 ------------------------ILKARKMINELLAKNSGQPIEKINKDTERDNYLTAQ 195

Query: 217 EAKKVGLIDVVGG 229
           EA   GL+D +  
Sbjct: 196 EAVDYGLLDGIMT 208


>gi|225175063|ref|ZP_03729059.1| protein of unknown function DUF107 [Dethiobacter alkaliphilus AHT
           1]
 gi|225169239|gb|EEG78037.1| protein of unknown function DUF107 [Dethiobacter alkaliphilus AHT
           1]
          Length = 437

 Score = 42.3 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 3/124 (2%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISRD 63
           +K      +ML L T   ++      V      V  I I G +E      +ER  R + +
Sbjct: 1   MKNRTVALIMLLLFTGMSIFTVQPPAVSAEQETVYVIPIGGAVEQGLHRYLERSFREAEE 60

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
             A A+I+ +++PGG+  A   I   I       PV   V   A SAG  I+ +++ +  
Sbjct: 61  AGAQAIILEINTPGGAVDAATQIRDLI--YGADMPVYAYVRWSAISAGAYIALSADALYM 118

Query: 124 AETS 127
           A  S
Sbjct: 119 APGS 122


>gi|148652118|ref|YP_001279211.1| ATP-dependent Clp protease proteolytic subunit [Psychrobacter sp.
           PRwf-1]
 gi|148571202|gb|ABQ93261.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Psychrobacter
           sp. PRwf-1]
          Length = 240

 Score = 42.3 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED+    ++ ++  +  ++    + + ++SPGGS  AG A+F  +  +K   
Sbjct: 71  VIFLTGQVEDNMANLIVAQMLFLEAENPEKDIHLYINSPGGSVSAGLAMFDTMNFIKPDV 130

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +       A   S V               ++     I  +  
Sbjct: 131 STICMGGAYSMGSFLLAAGQKGKRYALANSRVMIHQPSGGAQGQATDIEINAREILKI-- 188

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
                                            R+++E    P +K     +   W    
Sbjct: 189 ----------------------------RDRLNRILAERTGQPLEKIERDVERDYWLDAQ 220

Query: 217 EAKKVGLIDVV 227
           EAK  GL+D V
Sbjct: 221 EAKAYGLVDEV 231


>gi|302835159|ref|XP_002949141.1| hypothetical protein VOLCADRAFT_120717 [Volvox carteri f.
           nagariensis]
 gi|300265443|gb|EFJ49634.1| hypothetical protein VOLCADRAFT_120717 [Volvox carteri f.
           nagariensis]
          Length = 288

 Score = 42.3 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 62/192 (32%), Gaps = 9/192 (4%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D  + +++  +  +   D    + + ++SPGG  Y+   +  AIQ +K   
Sbjct: 91  IIFVGGYINDKMATQIVGSLLALEAIDENEDIRLYINSPGGQPYSVLGVVDAIQSIKPDV 150

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      + S+  L S       A + + +     +         + K    + ++  
Sbjct: 151 QTVALGACYSYSSLLLASGTKGKRYAMKNTRIMMTQPMGGSQGDIYQIKKTVEELNAIYQ 210

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-- 215
              +              Q        +        ++   +  D      D  +     
Sbjct: 211 IFSRYYMRFTGMSQDAVEQATCRDYFMTPEQ-----AKMEGLIDDIIRGKGDYTVPPALV 265

Query: 216 AEAKKVGLIDVV 227
            + ++VGL+D +
Sbjct: 266 KQFREVGLVDDL 277


>gi|253996690|ref|YP_003048754.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylotenera
           mobilis JLW8]
 gi|253983369|gb|ACT48227.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylotenera
           mobilis JLW8]
          Length = 214

 Score = 42.3 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 23/199 (11%), Positives = 60/199 (30%), Gaps = 34/199 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 46  VIFLVGPVNDMSANLVVAQLLFLEAENPDKDISLYINSPGGSVTAGMSIYDTMQFIKPDV 105

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A +   +   S +        +      ++           
Sbjct: 106 STLCIGQAASMGAFLLAAGAKDKRYSLPNSRIMIHQPSGGFQGQSSDIEIHAKE------ 159

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         +++       ++           +  
Sbjct: 160 ------------------------ILYLRAKLNDILAHHTGRTAEEIDRDTERDNFMSAE 195

Query: 217 EAKKVGLIDV-VGGQEEVW 234
           ++   GLID  +G + E  
Sbjct: 196 QSVAYGLIDKVIGSRNEAV 214


>gi|113953920|ref|YP_730624.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CC9311]
 gi|113881271|gb|ABI46229.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. CC9311]
          Length = 196

 Score = 42.3 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 57/182 (31%), Gaps = 31/182 (17%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
            +  ++ ++  +  +D    + + ++SPGGS Y G  IF  +Q +K     +      + 
Sbjct: 38  SANRIVAQLLFLEAEDPEKEIFLYVNSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASM 97

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
            A  L + A     + + S +     L            + +    +             
Sbjct: 98  GAFLLCAGAKGKRSSLQHSRIMIHQPLG---GASGQASDIRIQADEILFLK--------- 145

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                                   +++    P DK    +D   + +  +A + GLID V
Sbjct: 146 ------------------DRLNHELADRTGQPLDKIQADTDRDFFMSPQQAMEYGLIDNV 187

Query: 228 GG 229
             
Sbjct: 188 ID 189


>gi|121593621|ref|YP_985517.1| ATP-dependent Clp protease proteolytic subunit [Acidovorax sp.
           JS42]
 gi|166201795|sp|A1W5B6|CLPP_ACISJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|120605701|gb|ABM41441.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acidovorax sp.
           JS42]
          Length = 202

 Score = 42.3 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 66/191 (34%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D     ++ ++  +  ++    +   ++SPGGS  AG AI+  +Q +K   
Sbjct: 37  VIFLVGEVNDQTANLVVAQLLFLESENPDKDISFYINSPGGSVTAGMAIYDTMQFIKPDV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A     +   S +    VL         ++           
Sbjct: 97  STLCCGFAASMGAFLLAAGAKGKRYSLPNSKIMIHQVLGGARGQATDIE----------- 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                              +    +  +     R+++E    P +K    ++   + T  
Sbjct: 146 -------------------IHARDILRTKEQMNRILAERTGQPIEKVKADTERDYFMTAD 186

Query: 217 EAKKVGLIDVV 227
           EAK  G++D V
Sbjct: 187 EAKDYGIVDQV 197


>gi|294501296|ref|YP_003564996.1| hypothetical protein BMQ_4558 [Bacillus megaterium QM B1551]
 gi|294351233|gb|ADE71562.1| putative membrane protein [Bacillus megaterium QM B1551]
          Length = 443

 Score = 42.3 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 67/233 (28%), Gaps = 30/233 (12%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDS 65
           +KT +  +  + L    F   S  +    HV  I +   +E+     L   IE    +D 
Sbjct: 1   MKTLFSFVCFLILATGLFPTISTADVKRVHV--IPVNKTVENGLLSFLNRSIEDA-ENDG 57

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
           A  +I+ + +PGG+  A   I +++                  S     +   +    + 
Sbjct: 58  ADLIILDIDTPGGAVDAASEIAKSL-----------------TSTPIPTAAFVDKKALSA 100

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
            + +                    +      +          +  +             +
Sbjct: 101 GAYIALNADQIYMTPGSTMGSAAVIDQHGNAAGKKAQSYWLSAMKSAAEQNNRNPKYAEA 160

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV-VGGQEEVWQSL 237
                 ++        +  L  ++    T  +A++VG  +  V   +++   L
Sbjct: 161 MANTKMVI-------PELNLKGNELLTLTPKQAEQVGYSEGTVKNLDDLLSVL 206


>gi|227328849|ref|ZP_03832873.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 207

 Score = 42.3 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED     ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  IIFLTGQVEDYMANLVVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A    +    S V     L  +      ++           
Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L+++    P +         R  + +
Sbjct: 156 ------------------------ILKVKAKMNELMAKHTGQPLEAIERDTERDRFLSAS 191

Query: 217 EAKKVGLIDVV 227
           EA   GL+D V
Sbjct: 192 EAVDYGLVDSV 202


>gi|33600679|ref|NP_888239.1| phage-related Clp protease [Bordetella bronchiseptica RB50]
 gi|33568279|emb|CAE32191.1| phage-related Clp protease [Bordetella bronchiseptica RB50]
          Length = 291

 Score = 42.3 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 55/228 (24%), Gaps = 22/228 (9%)

Query: 58  ERISRDDSATAL----IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113
                DD+   +    ++      G     + I  A++ +      +            L
Sbjct: 35  RAAVEDDAERTISVYDVIGYDWWTGEGVTAKRIASALRSMGAGPVTVNVNSPGGDMFEGL 94

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
                      E ++            +    DK  ++                ++ N  
Sbjct: 95  AIYNLLREHQGEVTVKVLGLAASAASIIAMAGDKRQIARAGFLM---VHNCWVNAQGNRH 151

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-AEAKKVGLIDVVGGQEE 232
            ++   D ++        +   S      +     DG  W G ++A + G  D +   ++
Sbjct: 152 DLREFADTMEPFDAAMADIYVASSGQDLGEVQRQMDGETWIGGSQAIEQGYADELLPSDQ 211

Query: 233 V--------------WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           V               +S             +  +  K+       + 
Sbjct: 212 VGKGTSGTSASAVRRIESAMRAAGLPRSEAQRLISEFKSSLSDSAGSG 259


>gi|317455555|pdb|3Q7H|A Chain A, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455556|pdb|3Q7H|B Chain B, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455557|pdb|3Q7H|C Chain C, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455558|pdb|3Q7H|D Chain D, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455559|pdb|3Q7H|E Chain E, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455560|pdb|3Q7H|F Chain F, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455561|pdb|3Q7H|G Chain G, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455562|pdb|3Q7H|H Chain H, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455563|pdb|3Q7H|I Chain I, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455564|pdb|3Q7H|J Chain J, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455565|pdb|3Q7H|K Chain K, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455566|pdb|3Q7H|L Chain L, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455567|pdb|3Q7H|M Chain M, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455568|pdb|3Q7H|N Chain N, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
          Length = 195

 Score = 42.3 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 35/192 (18%)

Query: 40  RIAIRGQIEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
            I + GQ+ED      + + +   S + +   + + ++SPGG+  +  AI+   Q VK  
Sbjct: 30  VIFLVGQVEDHXANLAIAQXLFLESENPN-KDINLYINSPGGAVTSAXAIYDTXQFVKPD 88

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
              +      +A A  L   A         S V    VL  Y      +       + V 
Sbjct: 89  VRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVXIHQVLGGYQGQGTDIQIHAKQTQRVS 148

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215
                                             +++++      ++    ++   + T 
Sbjct: 149 ------------------------------DQLNQILAKHTGKDIERVEKDTNRDYFLTP 178

Query: 216 AEAKKVGLIDVV 227
            EA + GLID +
Sbjct: 179 EEAVEYGLIDSI 190


>gi|302869360|ref|YP_003837997.1| endopeptidase Clp [Micromonospora aurantiaca ATCC 27029]
 gi|315504165|ref|YP_004083052.1| endopeptidase clp [Micromonospora sp. L5]
 gi|302572219|gb|ADL48421.1| Endopeptidase Clp [Micromonospora aurantiaca ATCC 27029]
 gi|315410784|gb|ADU08901.1| Endopeptidase Clp [Micromonospora sp. L5]
          Length = 213

 Score = 42.3 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 57/176 (32%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +  ++  ++ +D    + + ++SPGGS Y+G AI+  +Q + N    +     MAAS G 
Sbjct: 53  ICAQLLLLAAEDPDRDIFLWINSPGGSVYSGMAIYDTMQYIDNDVSTVA--MGMAASMGQ 110

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L+ CA                           L                           
Sbjct: 111 LLLCAGTKGKR-----YALPHARIMMHQPSGGLGG-----------------------TA 142

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVV 227
             + +  + +  +   F   V+        +    SD  R +T  EA   G ID V
Sbjct: 143 SDIAIQAEQMLYTKRMFQERVAFHTGQSQAQIEADSDRDRWFTAQEAMDYGFIDKV 198


>gi|296109420|ref|YP_003616369.1| protein of unknown function DUF114 [Methanocaldococcus infernus ME]
 gi|295434234|gb|ADG13405.1| protein of unknown function DUF114 [Methanocaldococcus infernus ME]
          Length = 271

 Score = 42.3 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 70/181 (38%), Gaps = 12/181 (6%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+E++  I    +D     +I    +PGG   A   I RA++       VI   + M
Sbjct: 68  IEDSEEILRAIRSAPKDKPIDLII---HTPGGLVLAASQIARALKNHPAETRVIVPHYAM 124

Query: 107 AASAGYLISCASNIIVAAETSLVGSIG-VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           +   G LI+ A++ I+  + +++G +   L QYP             ++V+   +     
Sbjct: 125 SG--GTLIALAADKIIMDKNAVLGPVDPQLGQYPAPSIVKAVEEKGKENVEDKTLILADV 182

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL-I 224
               +      +   + D       + +++            +     T  EA K+GL +
Sbjct: 183 AKKAIKQVENFVYWLLKDKYGEEKAKELAK-----ILTEGRWTHDYPITVDEAIKLGLKV 237

Query: 225 D 225
           D
Sbjct: 238 D 238


>gi|318041532|ref|ZP_07973488.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CB0101]
          Length = 196

 Score = 42.3 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 61/188 (32%), Gaps = 31/188 (16%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
            +  ++ ++  +  +D    + + ++SPGGS Y G  IF  +Q +K     +     +AA
Sbjct: 38  SANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHIKPDVHTVCVG--LAA 95

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
           S G  + CA      +  +      +       +     + +    +     K       
Sbjct: 96  SMGAFLLCAGAKGKRSSLTHSRI-MIHQPLGGARGQASDIRIQADEILYLKKKLNQEL-- 152

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                                    ++    P  +    +D   + + AEA + GLID V
Sbjct: 153 -------------------------ADRTGQPLSRIEEDTDRDFFMSPAEAAEYGLIDKV 187

Query: 228 GGQEEVWQ 235
             +  V  
Sbjct: 188 IDKRPVRA 195


>gi|303239032|ref|ZP_07325562.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acetivibrio
           cellulolyticus CD2]
 gi|302593370|gb|EFL63088.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acetivibrio
           cellulolyticus CD2]
          Length = 194

 Score = 42.3 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 60/177 (33%), Gaps = 31/177 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q VK     I      +  A  
Sbjct: 44  VVAQMLFLEAEDPDKDIQLYINSPGGSVSAGFAIYDTMQYVKPDVSTICIGMAASMGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     A   S +     L         +                           
Sbjct: 104 LNAGAKGKRFALPNSEIMIHQPLGGTRGQATEIK-------------------------- 137

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228
               +  + +  +     R++SE    P +K    ++   + +  EAK  GL+D V 
Sbjct: 138 ----IHAEHILKTRDRLNRILSEKTGQPLEKIEADTERDFFMSAEEAKAYGLVDDVM 190


>gi|292491118|ref|YP_003526557.1| peptidase S14 ClpP [Nitrosococcus halophilus Nc4]
 gi|291579713|gb|ADE14170.1| peptidase S14 ClpP [Nitrosococcus halophilus Nc4]
          Length = 785

 Score = 42.3 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 64/208 (30%), Gaps = 38/208 (18%)

Query: 39  ARIAIRGQIED-SQELIERIERISRDDSATA--LIVSLSSPGGSAYAGEAIFRAIQKVKN 95
           A I I G I    +E I+    +    S  A  +   ++S GGS Y G AI  A+ +   
Sbjct: 36  AEIYIYGDIGGWDEESIDARRFVQDLASLEARLITARINSIGGSVYDGLAIHNALVRHPA 95

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
           +     +                        S+   I +  +   +      +  +  ++
Sbjct: 96  QVTTTID--------------------GIAASIASLIAMAGEERTMASNALLMVHAPWTL 135

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR---I 212
                +        ++                      +E+     +  L L        
Sbjct: 136 AIGNSEEFRRMADMLDK------------HSEAMTAAYAEATGQSAEDILALLTDGEDHY 183

Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
           +T  EA+ +G +  VG ++ V + L A+
Sbjct: 184 YTAEEAQALGFVHSVGSEQPVPEDLTAM 211


>gi|148245175|ref|YP_001219868.1| ClpP-like phage protease [Clostridium kluyveri DSM 555]
 gi|219684075|ref|YP_002470457.1| hypothetical protein CKR_P47 [Clostridium kluyveri NBRC 12016]
 gi|146337055|gb|ABQ23666.1| predicted ClpP-like phage protease [Clostridium kluyveri DSM 555]
 gi|219570583|dbj|BAH08566.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 255

 Score = 42.3 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 69/207 (33%), Gaps = 37/207 (17%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIERISRD-DSATALIVSLSSPGGS 79
            W   +  +    A I I G+I      D+       ++   D      + + ++SPGG+
Sbjct: 7   FWQMKMSADDDKQADIFIYGEIVSYKWDDTDTTAASFKKDLDDLGDVNTINLHINSPGGN 66

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
            + G AI   +++ K +      V  +AAS   +I+ + N I+  + S++     L    
Sbjct: 67  VFEGVAIGNMLKQHKAQVN--VYVDALAASIASIIAMSGNTILMPKNSMMMIHNPL---- 120

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                         S+     K       +++   + M              L      +
Sbjct: 121 --------------SIAWGNAKDFRKKADDLDKIGLSM----------QTTYLNKAGDKL 156

Query: 200 PYDKTLVLSDGRIW-TGAEAKKVGLID 225
             D    L D   W +  +A   GL D
Sbjct: 157 DQDTLQKLMDNDTWLSADDAYSYGLCD 183


>gi|313884960|ref|ZP_07818712.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619651|gb|EFR31088.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 200

 Score = 42.3 bits (97), Expect = 0.089,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 64/205 (31%), Gaps = 36/205 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D+    +I ++  +   D    + + ++SPGGS  AG A++  +Q +    
Sbjct: 29  IIMLSGEVNDAMANSVIAQLLFLDAQDPDKDIYLYINSPGGSVTAGMAMYDTMQFINADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +       A   + V     L         ++           
Sbjct: 89  QTIVIGMAASMGSVLLAAGTKGKRWALPNAEVMIHQPLGGAQGQATEIEIAAK------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +  +     +++S++     +     +D   + T  
Sbjct: 142 -----------------------HILLTRDRLNKILSDATGQDLEVIQKDTDRDNFMTAQ 178

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALG 241
           +A   GLID +    E  + L    
Sbjct: 179 QALDYGLIDGIM---ENAKKLKEKK 200


>gi|326800870|ref|YP_004318689.1| peptidase S14 ClpP [Sphingobacterium sp. 21]
 gi|326551634|gb|ADZ80019.1| peptidase S14 ClpP [Sphingobacterium sp. 21]
          Length = 373

 Score = 42.3 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 60/201 (29%), Gaps = 17/201 (8%)

Query: 27  WSSHVEDNSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGS 79
           +   V + S  V RI I G I D       +         +        + + ++SPGGS
Sbjct: 5   FFQVVSNKSDQVGRINIYGFIGDYWEKANTATNFEREFRALEE--KHDRIDIYINSPGGS 62

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV----L 135
            + G  IF  I+  +            +     L+S  +    A + S+  +  V     
Sbjct: 63  VWEGLPIFNTIRSSQKEIHTYVNGIAFSMGFMLLLSAKNGRRHAFKGSIGMAHNVSTYDY 122

Query: 136 FQYPYVKPFLDKLGVSIKS----VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
                ++   D+L          +     K      SE               +  +   
Sbjct: 123 GNAKQLRKSADELDKYDDVLSALIAECSGKTVEQVKSEWLNYEDHFFTPDEMKAEGFVNH 182

Query: 192 LVSESRNIPYDKTLVLSDGRI 212
           +  +  +   +    LS G+I
Sbjct: 183 IEDDEASDMPENVQNLSFGQI 203


>gi|319784104|ref|YP_004143580.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317169992|gb|ADV13530.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 209

 Score = 42.3 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 60/199 (30%), Gaps = 33/199 (16%)

Query: 40  RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G +ED    +   ++  +  ++    + + ++SPGG   +G AI+  +Q +K   
Sbjct: 37  IIFITGPVEDGMATLVCAQLLFLEAENPKKEINLYINSPGGVVTSGMAIYDTMQFIKPAV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +   ++  A   + +                            
Sbjct: 97  STLCIGQAASMGSLLLTAGHKDMRFATPNARIMVHQPSG--------------------- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                      + +      +   +         +  +     Y++    L      T  
Sbjct: 136 -------GFQGQASDIERHALD--IIKLKRRLNEVYVKHTGKSYEEIEKTLDRDHFMTAD 186

Query: 217 EAKKVGLIDVVGGQEEVWQ 235
           EAK  GLID V    E  +
Sbjct: 187 EAKDFGLIDKVISSREAAE 205


>gi|295112117|emb|CBL28867.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synergistetes
           bacterium SGP1]
          Length = 195

 Score = 42.3 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 57/179 (31%), Gaps = 31/179 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K+    I      + +
Sbjct: 43  ANSIVAQLLFLESEDPDKDIHLYINSPGGSVTAGMAIYDTMQYIKSPVSTICVGMAASMA 102

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L   A    +A   + V     L         ++    +                  
Sbjct: 103 AILLSGGARGKRLALPNAEVMIHQPLGGTSGQASDIEIHARN------------------ 144

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227
                       + ++      +++       +K           T  EA   GLID +
Sbjct: 145 ------------ILNTRKRMNAILARHTGQDVEKVAQDTDRDNFMTAQEALDYGLIDRI 191


>gi|222055723|ref|YP_002538085.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp.
           FRC-32]
 gi|254763790|sp|B9M0Y1|CLPP_GEOSF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|221565012|gb|ACM20984.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp.
           FRC-32]
          Length = 199

 Score = 42.3 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 66/197 (33%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D+    +I ++  +  +D    + + ++SPGG   AG AI+  ++ +K   
Sbjct: 28  IIFLGGAIDDTVSNLVIAQLLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMRYIKAPV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L         +   S +     L      +     + +  + +  
Sbjct: 88  STICVGQAASMGAFLLSGGEKGKRFSLANSRIMIHQPLG---GFQGQATDIHIHAQEILR 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
              K                              L++E      +K    ++   + +G 
Sbjct: 145 MKKK---------------------------LNELLAEHSGQTVEKIEADTERDYFMSGE 177

Query: 217 EAKKVGLIDVVGGQEEV 233
           +AK  G+ID +  +  +
Sbjct: 178 DAKTYGIIDSIITRNTI 194


>gi|167465665|ref|ZP_02330754.1| serine protease (phage related-protein, ClpP family) [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 238

 Score = 42.3 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 68/239 (28%), Gaps = 41/239 (17%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +    E ++R+      + + + ++SPGGS + G AI   +++ K    V   V  +A
Sbjct: 27  TSATSFKEDLDRLGD---LSTINLYINSPGGSVFEGIAIHNMLKRHKAN--VHVHVDALA 81

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           AS   +I+ A + I   + S++                                     +
Sbjct: 82  ASIASVIAMAGDTIYMPKNSMLMIHN----------------------------PWIFAW 113

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDV 226
              +             +    V L      +  +K   + D   W +  EA + GL D 
Sbjct: 114 GNASEMRKIADDLDRIGNSSKQVYLQKAGDKLSDEKLQDMLDAETWLSADEAFEYGLCD- 172

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
                 V Q    +    S   I  +           K       +     +    K  
Sbjct: 173 ------VVQEANTMAASISDEFINRYKNVPKQLISQQKTPISVGDMAKRQQIADGAKEN 225


>gi|157828616|ref|YP_001494858.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|166214706|sp|A8GSH5|CLPP_RICRS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157801097|gb|ABV76350.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           rickettsii str. 'Sheila Smith']
          Length = 201

 Score = 42.3 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 29/187 (15%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  ++    + + ++SPGG   AG AI+  +Q +K +   +      A S G 
Sbjct: 44  IVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQ--ACSMGS 101

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L+ C     +                             I+      +K +       + 
Sbjct: 102 LLLCGGEKGMR-----YSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSK 156

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
              Q +Q +  S                             +  EAKK GL+D +    +
Sbjct: 157 HTEQELQHIEKSMERDN----------------------FMSPEEAKKFGLVDNIISSRD 194

Query: 233 VWQSLYA 239
           V   L  
Sbjct: 195 VMALLAK 201


>gi|157962502|ref|YP_001502536.1| ATP-dependent Clp protease proteolytic subunit [Shewanella pealeana
           ATCC 700345]
 gi|189082466|sp|A8H614|CLPP_SHEPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157847502|gb|ABV88001.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           pealeana ATCC 700345]
          Length = 203

 Score = 42.3 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 51/176 (28%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +     + + ++SPGGS  AG AI+  +Q +K     +      +  A  
Sbjct: 53  IVAQLLFLESESPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFL 112

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L   A         S V     L      +     + +  + +     K           
Sbjct: 113 LAGGAEGKRHCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILGIKNKLNTML------ 163

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227
                                +E    P +            +  EA + GL+D V
Sbjct: 164 ---------------------AEHTGQPLEVIERDTDRDNFMSATEAAEYGLVDSV 198


>gi|213160794|ref|ZP_03346504.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
          Length = 155

 Score = 42.3 bits (97), Expect = 0.092,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 52/178 (29%), Gaps = 31/178 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K     I      +  A  
Sbjct: 5   IVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFL 64

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A         S V     L  Y      ++                          
Sbjct: 65  LTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE--------------------- 103

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229
                    +         L++       ++        R  +  EA + GL+D +  
Sbjct: 104 ---------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILT 152


>gi|70699877|gb|AAZ06846.1| ClpP2 [Microbacterium arborescens]
          Length = 208

 Score = 42.3 bits (97), Expect = 0.092,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 60/185 (32%), Gaps = 29/185 (15%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    +I+ ++SPGGS  A  AI+  +Q V  +   +      +
Sbjct: 43  ASADDVMAQLLVLESQDPDRDIIMYINSPGGSFTAMTAIYDTMQYVSPQIQTVVLGQAAS 102

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A++  L + A    +A   + +                D    + + +            
Sbjct: 103 AASVLLAAGAPGKRLALPNARILIHQPAVGEAGHGQASDIEIQAAEIL------------ 150

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226
                               W    ++   N   ++    +   +I +  EA + G++D 
Sbjct: 151 ----------------RMRTWLEETMARHTNRTQEQVNKDIDRDKILSAHEAMEYGIVDQ 194

Query: 227 VGGQE 231
           V    
Sbjct: 195 VLTSR 199


>gi|227113465|ref|ZP_03827121.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
 gi|253687443|ref|YP_003016633.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251754021|gb|ACT12097.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 207

 Score = 42.3 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  IIFLTGQVEDHMANLVVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A    +    S V     L  +      ++           
Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L+++    P +         R  + +
Sbjct: 156 ------------------------ILKVKAKMNELMAKHTGQPLEAIERDTERDRFLSAS 191

Query: 217 EAKKVGLIDVV 227
           EA   GL+D V
Sbjct: 192 EAVDYGLVDSV 202


>gi|323484460|ref|ZP_08089826.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           symbiosum WAL-14163]
 gi|323692476|ref|ZP_08106710.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           symbiosum WAL-14673]
 gi|323402238|gb|EGA94570.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           symbiosum WAL-14163]
 gi|323503473|gb|EGB19301.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           symbiosum WAL-14673]
          Length = 193

 Score = 42.3 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 54/176 (30%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGGS  AG AI+  +  +K     I      +  A  
Sbjct: 44  IVSQLLFLESEDPNKDIHLYINSPGGSVSAGLAIYDTMNYIKCDVSTICFGMAASMGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L   A     A   + V            +    ++ +  + +  +  K           
Sbjct: 104 LAGGAKGKRFALPNAEVMIHQPSG---GAQGQATEIQIVAEKILQTKKKLNEIL------ 154

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227
                                + +   PY+            T  EA + GLID V
Sbjct: 155 ---------------------AANTGQPYEVIERDTDRDNYMTAQEAMEYGLIDRV 189


>gi|18977905|ref|NP_579262.1| nodulation protein nfeD [Pyrococcus furiosus DSM 3638]
 gi|18893669|gb|AAL81657.1| nodulation protein nfeD [Pyrococcus furiosus DSM 3638]
          Length = 447

 Score = 42.3 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 94/286 (32%), Gaps = 43/286 (15%)

Query: 14  MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIV 71
            + ++T+  +          +S  V    I GQI      +    I    R+ +A A+I+
Sbjct: 6   AIMILTIFTLLLFAQGVKGRDSNVVYVAQITGQITSYTFDQFDRYISIAERN-NARAIII 64

Query: 72  SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV--HEMAASAGYLISCASNIIVAAETSLV 129
            L +PGG   A   I + IQ+ K    +         A++  Y+   A  I +A  TS+ 
Sbjct: 65  ELDTPGGRGDAMMEIIQRIQQAKVPVIIYVYPPGASAASAGTYIALGAHLIAMAPGTSIG 124

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
               +L              +    +                                  
Sbjct: 125 ACRPILGYSQNGSIVEAPPKIVNHYIAYIK------------------------------ 154

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSL----YALGVDQ 244
                  RN    +   +++    T  EA K G+I+V+    +++ +        + V+ 
Sbjct: 155 SLAEESGRNATIAE-KFITEDLSLTPEEALKYGVIEVIARDVDDLLEKANGMTTKIPVNG 213

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
              K+   N    Y    LK+  I+ + +  I  +  T   G+WA+
Sbjct: 214 RYIKLNFTNVEVRYLEPSLKDKLITYITDPNISYILLTL--GIWAL 257


>gi|134300401|ref|YP_001113897.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
           reducens MI-1]
 gi|172044337|sp|A4J7L9|CLPP_DESRM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134053101|gb|ABO51072.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Desulfotomaculum reducens MI-1]
          Length = 195

 Score = 42.3 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 58/192 (30%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G I+D  +  +I +   +  +D    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 30  IIFIGGPIDDHIANLVIAQFLFLEAEDPEKDIHLYINSPGGVVTAGLAIYDTMQYIKPAV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + +     L         +D           
Sbjct: 90  STICLGQAASMGSFLLAAGAPGKRYALPMARIMIHQPLGGVQGQATDIDIHAKE------ 143

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +          ++     P ++           +  
Sbjct: 144 ------------------------ILRMKDLLNDRLAHHTGQPLEQITRDTERDYFMSAE 179

Query: 217 EAKKVGLIDVVG 228
           EAKK GLID V 
Sbjct: 180 EAKKYGLIDEVM 191


>gi|290474663|ref|YP_003467543.1| clpA-clpP ATP-dependent serine protease proteolytic subunit
           [Xenorhabdus bovienii SS-2004]
 gi|289173976|emb|CBJ80763.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Xenorhabdus bovienii SS-2004]
          Length = 207

 Score = 42.3 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  IIFLTGPVEDHMANLIVAQMLFLEAENPEKDINLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +      ++           
Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAQE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216
                                   +         L+++    P +K        R  + A
Sbjct: 156 ------------------------ILKVKARMNELMAKHTGKPLEKIVEDTERDRFLSAA 191

Query: 217 EAKKVGLIDVV 227
           E+ + GL+D +
Sbjct: 192 ESVEYGLVDSI 202


>gi|256369536|ref|YP_003107046.1| ATP-dependent Clp protease proteolytic subunit [Brucella microti
           CCM 4915]
 gi|255999698|gb|ACU48097.1| ATP-dependent Clp protease proteolytic subunit [Brucella microti
           CCM 4915]
          Length = 209

 Score = 42.3 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 60/199 (30%), Gaps = 31/199 (15%)

Query: 40  RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED   ++   ++  +  ++    + + ++SPGG   +G AI+  +Q ++   
Sbjct: 37  IIFVNGPVEDGMSMLVCAQLLFLEAENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPPV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L + A+    A   + +                            
Sbjct: 97  STLCMGQAASMGSLLLTAGATGHRYALPNARIMVHQPSG--------------------- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                      + +         +        + +    R+    +   L      T  E
Sbjct: 136 -------GFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIE-CTLDRDHFMTAQE 187

Query: 218 AKKVGLIDVVGGQEEVWQS 236
           A + GLID V    +V   
Sbjct: 188 ALEFGLIDKVVEARDVSAD 206


>gi|261494048|ref|ZP_05990551.1| S14 family endopeptidase ClpP [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496191|ref|ZP_05992597.1| S14 family endopeptidase ClpP [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308143|gb|EEY09440.1| S14 family endopeptidase ClpP [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310214|gb|EEY11414.1| S14 family endopeptidase ClpP [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 197

 Score = 42.3 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 61/199 (30%), Gaps = 33/199 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED+    ++ ++  +  +D    + + ++SPGG   AG AI+  +  +K   
Sbjct: 29  IIFLNGQVEDNMANLIVAQLLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMNFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A     A   + +     L                      
Sbjct: 89  ATLCTGQAASMGAFLLSAGAKGKRFALPHARIMIHQPLGGARGQ---------------- 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                            +Q+  + +          ++E     Y+K           +  
Sbjct: 133 --------------ATDIQIQAEEILRLKATLTHRMAEHSGQSYEKVLADTERDNFMSAE 178

Query: 217 EAKKVGLIDVVGGQEEVWQ 235
           EA + GLID V        
Sbjct: 179 EAAEYGLIDKVLTSRSEVA 197


>gi|260889843|ref|ZP_05901106.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia
           hofstadii F0254]
 gi|260860449|gb|EEX74949.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia
           hofstadii F0254]
          Length = 208

 Score = 42.3 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED  +  ++ ++  +   D+   +++ ++SPGG   AG AI+  ++ +K+  
Sbjct: 47  IIFVSGEVEDGMANAIVAQLLFLDAQDNEKDIVMYINSPGGVITAGLAIYDTMRHIKSDV 106

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A     +   S +     L                      
Sbjct: 107 STVCVGQAASMGAVLLAAGAKGKRYSLPNSRIMIHQPLG--------------------- 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                      +                     +++SE+     ++           +  
Sbjct: 146 GARGQATDIQIQAKEIERM---------KEITSKILSEATGKSVEEIYADTERDNFMSPE 196

Query: 217 EAKKVGLIDVV 227
           EA   GLID +
Sbjct: 197 EAVNYGLIDKI 207


>gi|167624686|ref|YP_001674980.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           halifaxensis HAW-EB4]
 gi|189082465|sp|B0TLU9|CLPP_SHEHH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|167354708|gb|ABZ77321.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           halifaxensis HAW-EB4]
          Length = 203

 Score = 41.9 bits (96), Expect = 0.096,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 51/176 (28%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +     + + ++SPGGS  AG AI+  +Q +K     +      +  A  
Sbjct: 53  IVAQLLFLESESPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFL 112

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L   A         S V     L      +     + +  + +     K           
Sbjct: 113 LAGGAEGKRHCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILGIKNKLNTML------ 163

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227
                                +E    P +            +  EA + GL+D V
Sbjct: 164 ---------------------AEHTGQPLEVIERDTDRDNFMSATEAAEYGLVDSV 198


>gi|332290449|ref|YP_004421301.1| ATP-dependent Clp protease proteolytic subunit [Gallibacterium
           anatis UMN179]
 gi|330433345|gb|AEC18404.1| ATP-dependent Clp protease proteolytic subunit [Gallibacterium
           anatis UMN179]
          Length = 654

 Score = 41.9 bits (96), Expect = 0.097,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 72/220 (32%), Gaps = 40/220 (18%)

Query: 30  HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
            ++ ++   A + I  +I      +Q+    ++ I    +   + + + SPGG  + G A
Sbjct: 6   SIKASANQSAEVFIYDEIGFWGVSAQQFANELKEIG---NVRQINLHIHSPGGDVFDGIA 62

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I+  ++     K     +  +AAS   +I+ A + ++  E +++                
Sbjct: 63  IYNLLKNHPANKT--VYIDGLAASMASVIAMAGDEVIMPENAMLMIH------------- 107

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
                    ++    +        ++     ++   +                   D+  
Sbjct: 108 -----KPWGIQGGDAEELRKYADLLDKVESTLLMAYI------------AKTGKSEDELA 150

Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
            +     W TG E  ++G  D +        S+ +  ++ 
Sbjct: 151 AMLAVETWLTGKECVELGFADKLAEPLVAMASIQSKKIED 190


>gi|223938520|ref|ZP_03630412.1| Endopeptidase Clp [bacterium Ellin514]
 gi|223892782|gb|EEF59251.1| Endopeptidase Clp [bacterium Ellin514]
          Length = 215

 Score = 41.9 bits (96), Expect = 0.097,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 60/195 (30%), Gaps = 31/195 (15%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +I ++  +   D    + + ++SPGGS  AG AI+  +Q +             +  A  
Sbjct: 51  IIAQLLFLQMSDPKKDIHLYINSPGGSVTAGLAIYDTMQFLTCDVNTYCIGQAASMGAVL 110

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L         A   + +    VL                                     
Sbjct: 111 LCGGTKGKRYALPNANIMIHQVLGGAEGQ------------------------------A 140

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQE 231
             V++    +         ++S+    P ++     D   + T  EAK  GL+D V    
Sbjct: 141 SDVEIRVKYMLRLKQRLNGIISKHTGKPIEQVEKDCDRDNFMTSDEAKAYGLVDEVVQSR 200

Query: 232 EVWQSLYALGVDQSI 246
           +   +L A  VD+  
Sbjct: 201 KEIHTLVAGQVDKKD 215


>gi|260821306|ref|XP_002605974.1| hypothetical protein BRAFLDRAFT_92198 [Branchiostoma floridae]
 gi|229291311|gb|EEN61984.1| hypothetical protein BRAFLDRAFT_92198 [Branchiostoma floridae]
          Length = 236

 Score = 41.9 bits (96), Expect = 0.097,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 55/191 (28%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D     ++ ++  +  + +   + + ++SPGGS  AG  I+  +Q +    
Sbjct: 60  IICVMGPISDEMSSLVVAQLLFLQSESNKKPVHMYINSPGGSVTAGLGIYDTMQYILPPV 119

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    + ++  L +       +   S +       Q                    
Sbjct: 120 NTWCVGQACSMASLLLAAGTPGCRHSLPNSRIMVHQPHGQAAGQ---------------- 163

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +  + +        +L  +            +   R  +  
Sbjct: 164 --------------ASDILIQAEEISKLKQQMNKLYVKHTGQELSVIEESMDRDRFMSPV 209

Query: 217 EAKKVGLIDVV 227
           EA+  GLID V
Sbjct: 210 EAEAFGLIDKV 220


>gi|55820449|ref|YP_138891.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           thermophilus LMG 18311]
 gi|55822333|ref|YP_140774.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           thermophilus CNRZ1066]
 gi|116627271|ref|YP_819890.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           thermophilus LMD-9]
 gi|67460179|sp|Q5M1A8|CLPP_STRT1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460181|sp|Q5M5U4|CLPP_STRT2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122268126|sp|Q03M78|CLPP_STRTD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|55736434|gb|AAV60076.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus
           thermophilus LMG 18311]
 gi|55738318|gb|AAV61959.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus
           thermophilus CNRZ1066]
 gi|116100548|gb|ABJ65694.1| ATP-dependent Clp protease proteolytic subunit ClpP [Streptococcus
           thermophilus LMD-9]
 gi|312277759|gb|ADQ62416.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           thermophilus ND03]
          Length = 196

 Score = 41.9 bits (96), Expect = 0.097,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 56/196 (28%), Gaps = 29/196 (14%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 27  IIMLTGPIEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S           +       +          D    +   +K+
Sbjct: 87  QTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                +    +   P     +    D+                             +  E
Sbjct: 147 RNNLEQILADNSGQPIEKVHVDAERDNWM---------------------------SAQE 179

Query: 218 AKKVGLIDVVGGQEEV 233
             + G ID +    ++
Sbjct: 180 TLEYGFIDEIMTNNQL 195


>gi|190892539|ref|YP_001979081.1| endopeptidase Clp protein, subunit 1 [Rhizobium etli CIAT 652]
 gi|218516193|ref|ZP_03513033.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           8C-3]
 gi|190697818|gb|ACE91903.1| endopeptidase Clp protein, subunit 1 [Rhizobium etli CIAT 652]
          Length = 203

 Score = 41.9 bits (96), Expect = 0.098,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D+    +  ++  +  ++    + + ++SPGG+  +G A++  ++ +    
Sbjct: 33  IIFLNGEVNDTVSALVCAQLLFLEAENPNKPINLYINSPGGAVTSGLAMYDTMRFIHAPV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                         + +   +   + +   + G  G     P     + +     +    
Sbjct: 93  --------------HTLCMGTARSMGSFLLMAGEPGERAALPNASILIHQPSGGFQG--- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +  + +  +     RL +E     Y+     +   R  T  
Sbjct: 136 -------------QASDMLIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAE 182

Query: 217 EAKKVGLIDVV 227
           EA + GLID +
Sbjct: 183 EALEWGLIDRI 193


>gi|120599414|ref|YP_963988.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
           W3-18-1]
 gi|146292590|ref|YP_001183014.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           putrefaciens CN-32]
 gi|166214710|sp|A4Y5I2|CLPP_SHEPC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214712|sp|A1RL89|CLPP_SHESW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|120559507|gb|ABM25434.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
           W3-18-1]
 gi|145564280|gb|ABP75215.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           putrefaciens CN-32]
 gi|319425892|gb|ADV53966.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           putrefaciens 200]
          Length = 202

 Score = 41.9 bits (96), Expect = 0.098,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 50/178 (28%), Gaps = 31/178 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +     + + ++SPGGS  AG AI+  +Q +K     +      +  A  
Sbjct: 52  IVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFL 111

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L             S V     L      +     + +  + +     K           
Sbjct: 112 LAGGEKGKRFCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILGIKHKLNLML------ 162

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229
                                +E    P +            +  +A + GL+D V  
Sbjct: 163 ---------------------AEHTGQPLEVIERDTDRDNFMSATQAVEYGLVDSVMT 199


>gi|319760381|ref|YP_004124319.1| ATP-dependent Clp protease, proteolytic subunit [Candidatus
           Blochmannia vafer str. BVAF]
 gi|318039095|gb|ADV33645.1| ATP-dependent Clp protease, proteolytic subunit [Candidatus
           Blochmannia vafer str. BVAF]
          Length = 215

 Score = 41.9 bits (96), Expect = 0.099,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I   IE+  +  ++ ++  +  ++    + + ++SPGG   AG +I+  IQ +K   
Sbjct: 49  IIFITDTIENHTANSIVAQMMFLESENPTKDIHLYINSPGGLITAGMSIYDTIQFIKPDV 108

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L + A         + V     L  +      +      I  VK+
Sbjct: 109 STYCMGQAASMGAFLLAAGAKGKRFCLPNARVMIHQPLGSFQGQATDIAIHTKEILQVKN 168

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
           +  K                              L+++      D     +      +  
Sbjct: 169 NINK------------------------------LIAKHTGKSIDIVIKDMERDCFLSAD 198

Query: 217 EAKKVGLIDVV 227
           EA   GL+D V
Sbjct: 199 EAMDYGLVDCV 209


>gi|317123029|ref|YP_004103032.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter marianensis DSM 12885]
 gi|315593009|gb|ADU52305.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter marianensis DSM 12885]
          Length = 199

 Score = 41.9 bits (96), Expect = 0.099,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I   I+D  +  +I ++  +  DD    + + ++SPGGS  +G AI+  +Q +K   
Sbjct: 29  IVFIGTPIDDVVANSVIAQLLFLQTDDPDRDISIYINSPGGSVDSGLAIYDTMQHIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L         A   S +       Q                    
Sbjct: 89  ATYCVGLAASMGAILLAGGTKGKRYALPHSRIMIHQPHSQVGG----------------- 131

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            V++  D +         ++++    P ++    ++   + T  
Sbjct: 132 -------------TASDVKIYADQLLKLRQVANEILAKHTGQPLERIERDTERDFFMTAE 178

Query: 217 EAKKVGLIDVV 227
           EAK  G+ID V
Sbjct: 179 EAKAYGIIDHV 189


>gi|260432980|ref|ZP_05786951.1| Clp protease [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416808|gb|EEX10067.1| Clp protease [Silicibacter lacuscaerulensis ITI-1157]
          Length = 210

 Score = 41.9 bits (96), Expect = 0.099,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 57/191 (29%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I D     ++ ++  +  ++    + + ++SPGG   +G AI+  +Q +K + 
Sbjct: 38  IVFINGPIHDGMSHLIVAQLLHLEAENPKKEISIYINSPGGVVTSGLAIYDTMQYIKPK- 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                           +       + +     G  G+ F  P  +  + +     +    
Sbjct: 97  -------------CSTLVIGQAASMGSVLLAGGEKGMRFALPNSRIMVHQPSGGYQG--- 140

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +              + ++            L      +  
Sbjct: 141 -------------QASDIMIHAAETQKLKDRLYDIYAKHTGQSKKTIEKALDRDNFMSPE 187

Query: 217 EAKKVGLIDVV 227
           EAK+ G ID +
Sbjct: 188 EAKEWGHIDEI 198


>gi|261403256|ref|YP_003247480.1| protein of unknown function DUF114 [Methanocaldococcus vulcanius
           M7]
 gi|261370249|gb|ACX72998.1| protein of unknown function DUF114 [Methanocaldococcus vulcanius
           M7]
          Length = 278

 Score = 41.9 bits (96), Expect = 0.099,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 5/151 (3%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            IEDS+E++  I     D     +I    +PGG A A E I  A+++ K +  VI   + 
Sbjct: 67  TIEDSEEILRAIRLTPEDMPIDLII---HTPGGLALASEQIALALKEHKAKTTVIIPHYA 123

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           M+   G LI+ A++ I+  + +++G +            L+      + V    +     
Sbjct: 124 MSG--GSLIALAADEILIDKNAVMGPVDPQIGQYPAASILETYYRKGEKVSDETLILVDI 181

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
               +      + + + D       + +++ 
Sbjct: 182 SKKAIKQMYEFVYELLKDRYGEEKSKDIAKK 212


>gi|222110341|ref|YP_002552605.1| ATP-dependent clp protease proteolytic subunit [Acidovorax ebreus
           TPSY]
 gi|254763789|sp|B9MG14|CLPP_DIAST RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|221729785|gb|ACM32605.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acidovorax
           ebreus TPSY]
          Length = 202

 Score = 41.9 bits (96), Expect = 0.099,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 66/191 (34%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D     ++ ++  +  ++    +   ++SPGGS  AG AI+  +Q +K   
Sbjct: 37  VIFLVGEVNDQTANLVVAQLLFLESENPDKDISFYINSPGGSVTAGMAIYDTMQFIKPDV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A     +   S +    VL         ++           
Sbjct: 97  STLCCGFAASMGAFLLAAGAKGKRYSLPNSKIMIHQVLGGARGQATDIE----------- 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                              +    +  +     R+++E    P +K    ++   + T  
Sbjct: 146 -------------------IHARDILRTKDQMNRILAERTGQPIEKVKADTERDYFMTAD 186

Query: 217 EAKKVGLIDVV 227
           EAK  G++D V
Sbjct: 187 EAKDYGIVDQV 197


>gi|254448838|ref|ZP_05062294.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
           proteobacterium HTCC5015]
 gi|198261528|gb|EDY85817.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
           proteobacterium HTCC5015]
          Length = 236

 Score = 41.9 bits (96), Expect = 0.099,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 54/175 (30%), Gaps = 29/175 (16%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  D+    + + ++SPGGS  AG AI+  ++ +K     +      +  A  
Sbjct: 87  IVAQLLFLEADNPDKDISLYINSPGGSVTAGMAIYDTMRFIKPDVSTLCIGQAASMGAFL 146

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L   A     A   S V     L      +     + +  +++  +  K           
Sbjct: 147 LSGGAKGKRFALPNSSVMIHQPLG---GFQGQATDIDIHARNILKTKEKLN--------- 194

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
                   ++          V                       EAK+ GLID V
Sbjct: 195 -------RMLADHTGQPFERV----------VEDTERDNFMGADEAKEYGLIDDV 232


>gi|119774361|ref|YP_927101.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           amazonensis SB2B]
 gi|171704645|sp|A1S4X5|CLPP_SHEAM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|119766861|gb|ABL99431.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
           amazonensis SB2B]
          Length = 202

 Score = 41.9 bits (96), Expect = 0.099,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 48/180 (26%), Gaps = 31/180 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q +K +   +      +     
Sbjct: 53  IVAQLLFLESENPDKEIYLYINSPGGSVTAGMAIYDTMQFIKPKVSTVCIGQACS---MG 109

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
               A              + +       +     + +  + +     K           
Sbjct: 110 AFLLAGGEKGMRHCLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKHKLNQMLSH---- 165

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231
                                      P +            +  +A + GLID V    
Sbjct: 166 -----------------------HTGQPMEVIERDTDRDNFMSATQAVEYGLIDSVLTSR 202


>gi|332978057|gb|EGK14795.1| ATP-dependent Clp protease, protease subunit [Desmospora sp. 8437]
          Length = 201

 Score = 41.9 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 64/192 (33%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I   I+DS    ++ ++  ++ DD    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 37  IIFIGSPIDDSVANSVMAQMLFLAADDPDKEISLYINSPGGSITAGMAIYDTMQYIKPDV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +       A   S V     L                      
Sbjct: 97  STICVGMAASMGAFLLAAGTKGKRYALPNSEVMIHQPLGGVRGQ---------------- 140

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
                            +Q+  + +  +      +++     P  K    SD   +    
Sbjct: 141 --------------AADIQIHAEWILKTRKRIYEILAGRTGQPLSKIERDSDRDFFMDAQ 186

Query: 217 EAKKVGLIDVVG 228
           EAK+ GL+D V 
Sbjct: 187 EAKEYGLVDQVM 198


>gi|319935305|ref|ZP_08009743.1| ATP-dependent Clp protease proteolytic subunit [Coprobacillus sp.
           29_1]
 gi|319809713|gb|EFW06114.1| ATP-dependent Clp protease proteolytic subunit [Coprobacillus sp.
           29_1]
          Length = 194

 Score = 41.9 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 63/194 (32%), Gaps = 31/194 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  ++ ++  +   DS+  + + ++SPGGS  AG AI+  +  VK   
Sbjct: 29  IIMLCGEINDEVASSIVSQLLYLESLDSSADIYMYINSPGGSVSAGLAIYDTMNFVKCDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I+     +  A  L +       A + S +     L            + ++ K +  
Sbjct: 89  STISIGLSASMGAFLLAAGQKGKRCALQNSEIMIHQPLG---GTNGQASDIEITTKHILR 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
              K         +                         R I  D              +
Sbjct: 146 QKEKLNKLLSEMTSQPL----------------------RKIKKDTDRDY----FMNAYD 179

Query: 218 AKKVGLIDVVGGQE 231
           A + GLID V  ++
Sbjct: 180 ALEYGLIDEVLTKD 193


>gi|302384943|ref|YP_003820765.1| Endopeptidase Clp [Clostridium saccharolyticum WM1]
 gi|302195571|gb|ADL03142.1| Endopeptidase Clp [Clostridium saccharolyticum WM1]
          Length = 197

 Score = 41.9 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 31/195 (15%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + +     ++ ++  +   D    + + ++SPGGS   G AI   +  +K   
Sbjct: 30  IIMLNGTVTNETASLIMAQMLFLESADCTKDINLYINSPGGSVTDGFAIMDTMNYIKCDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I+     +A++  L S       A + S      +L   P +   L      I+    
Sbjct: 90  STISIGQSGSAASLLLASGKKGKRFALKNS-----EILIHQPSISGGLQGQATDIRI--- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                 + ++ +      + S     P ++    +      T  
Sbjct: 142 --------------------HSEWLERTKEKLHEIYSRLTGQPLNRIQEDMERDHYLTAE 181

Query: 217 EAKKVGLIDVVGGQE 231
           EAK  GLID +  ++
Sbjct: 182 EAKDYGLIDEILNRQ 196


>gi|192360657|ref|YP_001982472.1| ATP-dependent Clp protease proteolytic subunit [Cellvibrio
           japonicus Ueda107]
 gi|190686822|gb|ACE84500.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cellvibrio
           japonicus Ueda107]
          Length = 214

 Score = 41.9 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 57/191 (29%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 43  VIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 102

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A         S V                            
Sbjct: 103 STMCIGQACSMGAFLLNAGAEGKRFCLPNSRVMIHQPSGGAQGQ---------------- 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            + +    +         L++     P ++           +  
Sbjct: 147 --------------ASDIHIQAQEILKIRARLNELMAHHSGQPIERIEVDTERDNFMSAQ 192

Query: 217 EAKKVGLIDVV 227
           +AK  GLID V
Sbjct: 193 QAKDYGLIDAV 203


>gi|225389281|ref|ZP_03759005.1| hypothetical protein CLOSTASPAR_03027 [Clostridium asparagiforme
           DSM 15981]
 gi|225044660|gb|EEG54906.1| hypothetical protein CLOSTASPAR_03027 [Clostridium asparagiforme
           DSM 15981]
          Length = 193

 Score = 41.9 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 60/183 (32%), Gaps = 31/183 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  ++ ++  +  +D    + + ++SPGGS  AG AI+  +  +K+    I      +
Sbjct: 39  VSASLIVAQLLFLEAEDPGKDINLYINSPGGSVTAGMAIYDTMNYIKSDVSTICIGMAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L   A     +   S +            +    ++ +  +++  +  K      
Sbjct: 99  MGAFLLSGGAKGKRFSLPNSQIMIHQPSG---GAQGQATEIKIVAENILKTKRKLNEIL- 154

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDV 226
                                     + +   P +     ++   + +  EA++ GLID 
Sbjct: 155 --------------------------AANTGKPLEVIERDTERDYYMSAEEAREYGLIDQ 188

Query: 227 VGG 229
           +  
Sbjct: 189 IIT 191


>gi|15888940|ref|NP_354621.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium
           tumefaciens str. C58]
 gi|21759065|sp|Q8UEX6|CLPP1_AGRT5 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|15156717|gb|AAK87406.1| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium
           tumefaciens str. C58]
          Length = 202

 Score = 41.9 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 68/196 (34%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+++D+    +  ++  +  ++    + + ++SPGG   +G A++  ++ ++   
Sbjct: 33  IIFLNGEVDDTVSALVCAQLLFLEAENPKKPIHLYINSPGGMVTSGFAMYDTMRYIRAPV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                         + +   +   + +   + G  G     P     + +     +    
Sbjct: 93  --------------HTLCMGTARSMGSFLLMAGEPGTRAALPNASILIHQPSGGFQG--- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            + +  + +  + H   RL +E     Y++    +   R  T  
Sbjct: 136 -------------QASDMLIHAEEIRQTKHRMTRLYAEHCGRSYEEFETAMDRDRFMTVQ 182

Query: 217 EAKKVGLIDVVGGQEE 232
           EA + GLID +    E
Sbjct: 183 EALEWGLIDRILEVRE 198


>gi|318040432|ref|ZP_07972388.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CB0101]
          Length = 200

 Score = 41.9 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 63/187 (33%), Gaps = 32/187 (17%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            +   I +S  L+ ++  +  +D++  + + ++SPGGS  AG AI+  IQ VK+    I 
Sbjct: 38  EVNDAIANS--LVAQMLYLDSEDNSKPIYLYINSPGGSVTAGLAIYDTIQYVKSDVVTIC 95

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                +  A  L +      +A   S +     L      +    ++             
Sbjct: 96  VGLAASMGAFLLGAGTKGKRLALPHSRIMIHQPLGGTSQRQASDIEIEAR---------- 145

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220
                               +        + +++       K    +D   + +  EAK 
Sbjct: 146 -------------------EILRIKDMLNQSMADMTGQELAKIEKDTDRDYFLSAEEAKN 186

Query: 221 VGLIDVV 227
            GLID V
Sbjct: 187 YGLIDRV 193


>gi|254485779|ref|ZP_05098984.1| Clp protease [Roseobacter sp. GAI101]
 gi|214042648|gb|EEB83286.1| Clp protease [Roseobacter sp. GAI101]
          Length = 215

 Score = 41.9 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 57/191 (29%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++ +  + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 38  IIFLSGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +    +  +   S V        Y                   
Sbjct: 98  STLVIGQAASMGSLLLQAGEKGMRFSLPNSRVMVHQPSGGYQGQ---------------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            + +              +  +      +K    L      +  
Sbjct: 142 --------------ATDIMIHAQETQKLKTRLNEIYVKHTGQSLEKVEAALERDNFMSPE 187

Query: 217 EAKKVGLIDVV 227
           EAK  GLID +
Sbjct: 188 EAKDWGLIDEI 198


>gi|197284027|ref|YP_002149899.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis
           HI4320]
 gi|226329068|ref|ZP_03804586.1| hypothetical protein PROPEN_02971 [Proteus penneri ATCC 35198]
 gi|227358102|ref|ZP_03842444.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis
           ATCC 29906]
 gi|226706465|sp|B4EU53|CLPP_PROMH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|194681514|emb|CAR40393.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis
           HI4320]
 gi|225202254|gb|EEG84608.1| hypothetical protein PROPEN_02971 [Proteus penneri ATCC 35198]
 gi|227161837|gb|EEI46869.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis
           ATCC 29906]
          Length = 207

 Score = 41.9 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  IIFLTGQVEDHMANLIVAQMLFLEAENPEKDINLYINSPGGVITAGMSIYDTMQYIKADV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A    +    S V     L  Y                   
Sbjct: 102 STICMGQACSMGAFLLSAGAKGKRICLPNSRVMIHQPLGGYQGQ---------------- 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            +Q+    +         L+++      ++        R  +  
Sbjct: 146 --------------ATDIQIHAQEILKVKSRMNELMAQHTGKSIEEIERDTERDRFLSAN 191

Query: 217 EAKKVGLIDVV 227
           EA + GL+D V
Sbjct: 192 EALEYGLVDKV 202


>gi|154175235|ref|YP_001407437.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           curvus 525.92]
 gi|112803266|gb|EAU00610.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           curvus 525.92]
          Length = 196

 Score = 41.9 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+IED  +  ++ ++  +  +D    + + ++SPGG   +G +IF  +  +K   
Sbjct: 30  IVMLSGEIEDGMAASIVAQLLFLEAEDPEKDIYLYINSPGGVITSGFSIFDTMNYIKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     A   S +     L         ++           
Sbjct: 90  CTICIGQAASMGAFLLSCGAPGKRYALPNSRIMIHQPLGGARGQASDIE----------- 138

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216
                              +    +         +++++     +K           +  
Sbjct: 139 -------------------IQAREILRLKEILNGILAKNTGQKLNKIVKDTERDFFMSSH 179

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID +
Sbjct: 180 EAKEYGLIDKI 190


>gi|15643458|ref|NP_228504.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga maritima
           MSB8]
 gi|148269380|ref|YP_001243840.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga
           petrophila RKU-1]
 gi|170288038|ref|YP_001738276.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga
           sp. RQ2]
 gi|281411923|ref|YP_003346002.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga
           naphthophila RKU-10]
 gi|6685314|sp|Q9WZF9|CLPP_THEMA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214719|sp|A5IJ91|CLPP_THEP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706553|sp|B1L812|CLPP_THESQ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|4981218|gb|AAD35777.1|AE001741_10 ATP-dependent Clp protease, proteolytic subunit [Thermotoga
           maritima MSB8]
 gi|147734924|gb|ABQ46264.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermotoga
           petrophila RKU-1]
 gi|170175541|gb|ACB08593.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga
           sp. RQ2]
 gi|281373026|gb|ADA66588.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga
           naphthophila RKU-10]
          Length = 203

 Score = 41.9 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 79/230 (34%), Gaps = 35/230 (15%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERISRD 63
           KKI  +YV + + +      ++          +  + +   I+D     +I ++  +  +
Sbjct: 6   KKIIDQYVPIVVESTGRYERAYDIFSRLLKDRI--VFLGSPIDDYVANLVIAQLLFLEAE 63

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
           D    + + ++SPGGS  AG AI+  +Q +K     I      + +A  L + A     A
Sbjct: 64  DPDKDVYLYINSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYA 123

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
              + +     L                       P K       E+             
Sbjct: 124 LPNARIMIHQPLGG------------------AEGPAKDVEIITREL------------L 153

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEE 232
                  R++S+    P +K    +D   + +  EAK+ G++D V    E
Sbjct: 154 RIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVVSTRE 203


>gi|126733145|ref|ZP_01748892.1| Clp protease, putative [Roseobacter sp. CCS2]
 gi|126716011|gb|EBA12875.1| Clp protease, putative [Roseobacter sp. CCS2]
          Length = 206

 Score = 41.9 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++    + + ++SPGG   +G +I+  +Q ++ + 
Sbjct: 37  IIFVNGPVHDGMSQLIVAQLLHLESENPKKEISMYINSPGGVVTSGLSIYDTMQYIRPKV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                           +       + +     GS G+ F  P  +  + +     +    
Sbjct: 97  ST--------------LVIGQAASMGSLLLTAGSEGMRFSLPNSRVMVHQPSGGYQG--- 139

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            + +              +  +       K    L      +  
Sbjct: 140 -------------QATDIMIHAAETQKLKTRLNEIYVKHTGNTLKKVEAALERDNFMSPE 186

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID +
Sbjct: 187 EAKEWGLIDEI 197


>gi|47216266|emb|CAG05962.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 249

 Score = 41.9 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+DS    +I ++  +  + +   + + ++SPGG   AG AI+  +Q + N  
Sbjct: 56  IICVMGPIDDSVASLIIAQLLFLQSESNNKPIHMYINSPGGVVTAGLAIYDTMQYILNPI 115

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                     A++   +  A+       +     + +       +     + +  + +  
Sbjct: 116 STWCVG---QAASMGSLLLAAGTAGMRHSLPNARVMIHQPSGGARGQATDIAIQAEEILK 172

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216
                                             + ++    P +    + +  R  +  
Sbjct: 173 LK---------------------------RQINTIYAKHTGQPLETIESIMERDRYMSPM 205

Query: 217 EAKKVGLIDVV 227
           EA+  GLID V
Sbjct: 206 EAQDFGLIDRV 216


>gi|254410742|ref|ZP_05024520.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182097|gb|EDX77083.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Microcoleus
           chthonoplastes PCC 7420]
          Length = 202

 Score = 41.9 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 59/176 (33%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  DD    + + ++SPGGS  AG  I+  + +++     I      +  A  
Sbjct: 42  IVAQLLFLEADDPEKDIYLYINSPGGSVTAGMGIYDTMNQIRPDVCTICVGLAASMGAFL 101

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A    ++   S +     L         ++                          
Sbjct: 102 LSAGAKGKRMSLPHSRIMIHQPLGGAQGQASDIE-------------------------- 135

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
               +    +        +L++E  + P D+    ++   + +  EAK   LID V
Sbjct: 136 ----IQAKEILYHKQRLNQLLAEHTDQPLDRIAEDTERDFFMSAEEAKDYRLIDQV 187


>gi|163759316|ref|ZP_02166402.1| ATP-dependent Clp protease proteolytic subunit [Hoeflea
           phototrophica DFL-43]
 gi|162283720|gb|EDQ34005.1| ATP-dependent Clp protease proteolytic subunit [Hoeflea
           phototrophica DFL-43]
          Length = 210

 Score = 41.9 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 65/203 (32%), Gaps = 33/203 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G +ED  +  +  ++  +  ++    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 37  IIFITGPVEDHMATLVCAQLLFLEAENPKKEIALYINSPGGVVTAGMAIYDTMQFIKPAI 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      AAS G L+ CA    +    +    + V       +     +    + +  
Sbjct: 97  STLCVGQ--AASMGSLLLCAGEKGMRFA-TPNARVMVHQPSGGFQGQASDIERHAQDIIK 153

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                                             +  +     Y+     L      T  
Sbjct: 154 MK---------------------------RRLNEVYVKHTGQDYETVEKTLDRDHFMTAE 186

Query: 217 EAKKVGLIDVVGGQEEVWQSLYA 239
           EA + GLID V  + E  ++   
Sbjct: 187 EALEFGLIDRVFDKRENIEAPAE 209


>gi|197105280|ref|YP_002130657.1| ATP-dependent Clp protease, proteolytic subunit [Phenylobacterium
           zucineum HLK1]
 gi|196478700|gb|ACG78228.1| ATP-dependent Clp protease, proteolytic subunit [Phenylobacterium
           zucineum HLK1]
          Length = 205

 Score = 41.9 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G +ED     +  ++  +  ++    + + ++SPGG   +G AI+  +Q +  + 
Sbjct: 37  IVFLAGPVEDGMASLICAQLLHLEAENPKKEIQMYINSPGGVVTSGLAIYDTMQYI--KS 94

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
           PVIT    MAAS G  +  A          +      +  +     +             
Sbjct: 95  PVITLCLGMAASMGSFLLMAGEKG----QRIALPNSRIMVHQPSGGY------------- 137

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                      +          + +  +      + ++    P +      D   + T  
Sbjct: 138 ---------SGKATDIQRHA--EDIIKTKRRLNEIYAKHTGQPIEAVEETLDRDFFMTAQ 186

Query: 217 EAKKVGLIDVV 227
           EAK  GL+D V
Sbjct: 187 EAKDWGLVDHV 197


>gi|170718338|ref|YP_001783566.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus somnus
           2336]
 gi|189082460|sp|B0UW20|CLPP_HAES2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|168826467|gb|ACA31838.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
           somnus 2336]
          Length = 193

 Score = 41.9 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED     ++ ++  +  +D A  + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  VIFLTGEVEDRMANLIVAQLLFLEAEDPAKDINIYINSPGGSVTAGMAIYDTMQFIKPNV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L    +    A   + V     L  +                   
Sbjct: 89  RTLCIGQACSMGAFLLAGGTAGKRAALPHARVMIHQPLGGFRGQ---------------- 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            +Q+    +          ++       ++           +  
Sbjct: 133 --------------ASDIQIHAQEILKIKQTLNERLAFHTGQSIEQIEQDTDRDNFMSAE 178

Query: 217 EAKKVGLIDVV 227
           +AK  GL+D V
Sbjct: 179 QAKLYGLVDDV 189


>gi|208779709|ref|ZP_03247053.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           novicida FTG]
 gi|208744164|gb|EDZ90464.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           novicida FTG]
          Length = 201

 Score = 41.9 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 57/198 (28%), Gaps = 33/198 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++ D     +I ++  +  +D    +   ++SPGG   AG  ++  +Q +K   
Sbjct: 32  IVFLNGEVNDHSANLVIAQLLFLESEDPNKDIYFYINSPGGMVTAGMGVYDTMQFIKPDV 91

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L   A     +  +S +     L  +      ++    +I  +K 
Sbjct: 92  STICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKD 151

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216
              K                                +       +               
Sbjct: 152 RLNKVL------------------------------AHHTGQDLETIVKDTDRDNFMMAD 181

Query: 217 EAKKVGLIDVVGGQEEVW 234
           EAK  GLID V    E  
Sbjct: 182 EAKAYGLIDHVIESREAI 199


>gi|46241427|gb|AAS82913.1| capsid protein [Wolbachia phage WO]
 gi|46241431|gb|AAS82915.1| capsid protein [Wolbachia phage WO]
 gi|46241433|gb|AAS82916.1| capsid protein [Wolbachia phage WO]
 gi|46241435|gb|AAS82917.1| capsid protein [Wolbachia phage WO]
 gi|46241437|gb|AAS82918.1| capsid protein [Wolbachia phage WO]
 gi|46241441|gb|AAS82920.1| capsid protein [Wolbachia phage WO]
 gi|46241443|gb|AAS82921.1| capsid protein [Wolbachia phage WO]
 gi|46241451|gb|AAS82925.1| capsid protein [Wolbachia phage WO]
 gi|46241453|gb|AAS82926.1| capsid protein [Wolbachia phage WO]
 gi|46241455|gb|AAS82927.1| capsid protein [Wolbachia phage WO]
 gi|46241465|gb|AAS82932.1| capsid protein [Wolbachia phage WO]
 gi|46241467|gb|AAS82933.1| capsid protein [Wolbachia phage WO]
          Length = 131

 Score = 41.9 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   +  ++++ +Q  VD  Y  FV+L++ +RN+  +       G  + G +A ++GL D
Sbjct: 1   PHEPMTSESLESLQKEVDRLYEMFVQLIARNRNLSIEAIKSTEAGLYF-GEKAVEIGLAD 59

Query: 226 VVGGQEEVWQ 235
            V    E   
Sbjct: 60  GVTTFFEFIN 69


>gi|296156719|ref|ZP_06839557.1| protein of unknown function DUF107 [Burkholderia sp. Ch1-1]
 gi|295893318|gb|EFG73098.1| protein of unknown function DUF107 [Burkholderia sp. Ch1-1]
          Length = 517

 Score = 41.9 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 72/250 (28%), Gaps = 22/250 (8%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATAL 69
            +     +                  V  I + G I    +  ++  ++R + D+ A   
Sbjct: 22  LLAFGFASCESTGLDVPLRAAVAPSSVVVIPVNGAISPASADFIVRSLQRAA-DERAQLA 80

Query: 70  IVSLSSPGGSAYAGEAIFRAI----------------QKVKNRKPVITEVHEMAASAGYL 113
           ++ L +PGG   +   I +AI                +       ++   H  A + G  
Sbjct: 81  VLQLDTPGGLDTSMRQIIKAILASPVPVATFIAPSGARAASAGTYIVYASHIAAMAPGTN 140

Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
           +  A+ I +    +   + G     P +               +S   A     S +   
Sbjct: 141 LGAATPIQMGIGGAEPPAGGGAPGLPGIGGGGGGGSAGPAKPSASAASASTGSASALPLD 200

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
                          ++R +++ R    D     + +    + A+A    ++D      +
Sbjct: 201 TQSTEMRKQVHDAAAYIRGLAQMRGRNADWAERAVREAVSLSAADALAQHVVD--LNARD 258

Query: 233 VWQSLYALGV 242
           V   L  L  
Sbjct: 259 VPDLLRQLDG 268


>gi|126173838|ref|YP_001049987.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
           OS155]
 gi|153000122|ref|YP_001365803.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
           OS185]
 gi|160874744|ref|YP_001554060.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
           OS195]
 gi|217973910|ref|YP_002358661.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
           OS223]
 gi|304409711|ref|ZP_07391331.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica OS183]
 gi|307304067|ref|ZP_07583820.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica BA175]
 gi|166214708|sp|A3D305|CLPP_SHEB5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214709|sp|A6WLQ1|CLPP_SHEB8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082464|sp|A9KWH7|CLPP_SHEB9 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763799|sp|B8E5E9|CLPP_SHEB2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|125997043|gb|ABN61118.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
           baltica OS155]
 gi|151364740|gb|ABS07740.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica OS185]
 gi|160860266|gb|ABX48800.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica OS195]
 gi|217499045|gb|ACK47238.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica OS223]
 gi|304352229|gb|EFM16627.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica OS183]
 gi|306912965|gb|EFN43388.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica BA175]
 gi|315266986|gb|ADT93839.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica OS678]
          Length = 202

 Score = 41.9 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 50/178 (28%), Gaps = 31/178 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +     + + ++SPGGS  AG AI+  +Q +K     +       A++  
Sbjct: 52  IVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIG---QAASMG 108

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
               A              + +       +     + +  K +     K           
Sbjct: 109 AFLLAGGEKGKRHCLPNSRVMIHQPLGGFQGQASDIAIHAKEILGIKNKLNQML------ 162

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229
                                +E    P +            +  +A + GL+D V  
Sbjct: 163 ---------------------AEHTGQPLEVVERDTDRDNFMSATQAVEYGLVDSVMT 199


>gi|206564035|ref|YP_002234798.1| family S49 serine peptidase [Burkholderia cenocepacia J2315]
 gi|198040075|emb|CAR56056.1| serine peptidase, family S49 [Burkholderia cenocepacia J2315]
          Length = 516

 Score = 41.9 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 70/195 (35%), Gaps = 5/195 (2%)

Query: 38  VARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK- 94
           V  I + G I    +  ++  ++R +R+ +  A+ + L +PGG   +   I +A+ +   
Sbjct: 57  VVVIPVNGAIGPASADFIVRSLDRAAREHAPLAI-LQLDTPGGLDTSMRQIIKAVLRSPV 115

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
                +      AASAG  I  AS+    A  + +G+   +               + + 
Sbjct: 116 PVAAFVAPGGARAASAGTYIVYASHFAAMAPGTNLGAASPVQFGIGGAAPPGANPAAPRP 175

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIW 213
             +S         + +                  ++R +++ R    +     + +    
Sbjct: 176 TGASGASGVSDAAAVLPTDTQSTEIRKAIQDASAYIRGLAQLRGRNVEWAERAVREAVSL 235

Query: 214 TGAEAKKVGLIDVVG 228
           +  EA+   ++DV+ 
Sbjct: 236 SANEARAQHVVDVIA 250


>gi|169625037|ref|XP_001805923.1| hypothetical protein SNOG_15785 [Phaeosphaeria nodorum SN15]
 gi|160705586|gb|EAT76880.2| hypothetical protein SNOG_15785 [Phaeosphaeria nodorum SN15]
          Length = 228

 Score = 41.9 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 63/192 (32%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++EDS    +I ++  +  ++    + + ++SPGGS  AG AI+  +  +++  
Sbjct: 52  IITLNGEVEDSMSAVVIAQLLFLEAENPEKPISMYINSPGGSVSAGLAIYDTMNYIRSPV 111

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L             + V        Y                   
Sbjct: 112 STTCMGMAASMGSLLLAGGEPGQRYILPHARVMIHQPSGGYRGK---------------- 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
                     S++   A ++++     +  +   L  E      ++     +   +    
Sbjct: 156 ---------ASDIADHAKEILRIRDRLNRIYQNHLTKER---TLEEIEKYMERDYYMDAE 203

Query: 217 EAKKVGLIDVVG 228
           EA + G++D + 
Sbjct: 204 EAVEFGIVDKIM 215


>gi|165933331|ref|YP_001650120.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           rickettsii str. Iowa]
 gi|165908418|gb|ABY72714.1| ATP-dependent endopeptidase clp proteolytic subunit [Rickettsia
           rickettsii str. Iowa]
          Length = 216

 Score = 41.9 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 29/187 (15%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  ++    + + ++SPGG   AG AI+  +Q +K +   +      A S G 
Sbjct: 59  IVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQ--ACSMGS 116

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L+ C     +                             I+      +K +       + 
Sbjct: 117 LLLCGGEKGMR-----YSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSK 171

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
              Q +Q +  S                             +  EAKK GL+D +    +
Sbjct: 172 HTEQELQHIEKSMERDN----------------------FMSPEEAKKFGLVDNIISSRD 209

Query: 233 VWQSLYA 239
           V   L  
Sbjct: 210 VMALLAK 216


>gi|26989024|ref|NP_744449.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
           KT2440]
 gi|148548677|ref|YP_001268779.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
           F1]
 gi|38257487|sp|Q88KJ0|CLPP_PSEPK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214701|sp|A5W635|CLPP_PSEP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|24983847|gb|AAN67913.1|AE016423_8 ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           putida KT2440]
 gi|148512735|gb|ABQ79595.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudomonas
           putida F1]
 gi|171362771|dbj|BAG15849.1| probable ATP-dependent clp protease [Pseudomonas putida]
          Length = 213

 Score = 41.9 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 45  VIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +      ++     I ++  
Sbjct: 105 STICIGQACSMGAFLLAAGAKGKRHCLPNSRVMIHQPLGGFQGQATDIEIHAQEILNI-- 162

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                             L++       +            + +
Sbjct: 163 ----------------------------KARLNELLAYHTGQDLETIKRDTERDNFMSAS 194

Query: 217 EAKKVGLIDVV 227
            A + GLID V
Sbjct: 195 RAAEYGLIDSV 205


>gi|294340353|emb|CAZ88734.1| ATP-dependent Clp protease proteolytic subunit precursor
           (Endopeptidase Clp) (Caseinolytic protease) (Protease
           Ti) (Heat shock protein F21.5) [Thiomonas sp. 3As]
          Length = 202

 Score = 41.9 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D     ++ ++  +  ++    + + ++SPGGS  AG AIF  +Q +K   
Sbjct: 37  VIFLVGPINDQMANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPDV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  + + A     +   S +               ++           
Sbjct: 97  STLCTGIAASMGAFLMAAGAKGKRYSLPNSRIMIHQPSGGAQGQATDIE----------- 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                              +    +         +++E      +K  +        +  
Sbjct: 146 -------------------IQAREILYLRERLNGILAERTGQTLEKIGIDTERDFFMSAD 186

Query: 217 EAKKVGLIDVV 227
           EAK  GLID V
Sbjct: 187 EAKDYGLIDEV 197


>gi|332288867|ref|YP_004419719.1| ATP-dependent Clp protease proteolytic subunit [Gallibacterium
           anatis UMN179]
 gi|330431763|gb|AEC16822.1| ATP-dependent Clp protease proteolytic subunit [Gallibacterium
           anatis UMN179]
          Length = 195

 Score = 41.9 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 63/197 (31%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED+    ++ ++  +  ++    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 29  VIFLNGQVEDNMANLIVAQLLFLEAENPDEDINLYINSPGGVVTAGMAIYDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A+    A   + +     L  Y                   
Sbjct: 89  RTLCMGQACSMGAFLLAGGAAGKRFALPHARIMIHQPLGGYRGQ---------------- 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            +Q+    +        + ++     P +            +  
Sbjct: 133 --------------ASDIQIHAQEILKIKDTLNQRLAFHTGQPLEVVERDTDRDNFMSAQ 178

Query: 217 EAKKVGLIDVVGGQEEV 233
            AK+ GLID V    ++
Sbjct: 179 AAKEYGLIDEVLTHRQL 195


>gi|170049615|ref|XP_001857723.1| ATP-dependent Clp protease proteolytic subunit [Culex
           quinquefasciatus]
 gi|167871378|gb|EDS34761.1| ATP-dependent Clp protease proteolytic subunit [Culex
           quinquefasciatus]
          Length = 225

 Score = 41.9 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D     ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q VK   
Sbjct: 53  IICLMGPIHDDLSSLIVAQLLFLQSENGTKPIHMYINSPGGSVTAGLAIYDTMQYVKPPV 112

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L + A  +  +   + +                            
Sbjct: 113 ATWCVGQACSMGSLLLAAGAPGMRHSLPNARIMIHQPSGGAQGQ---------------- 156

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216
                            +Q+  + +         + ++    PY+     +         
Sbjct: 157 --------------ATDIQIQAEEILKLKKQLTEIYAKHTKSPYETLLAKMERDTFLNPE 202

Query: 217 EAKKVGLIDVV 227
           EA+ +G+ID V
Sbjct: 203 EAQTLGIIDTV 213


>gi|239623656|ref|ZP_04666687.1| ATP-dependent Clp protease [Clostridiales bacterium 1_7_47_FAA]
 gi|239521687|gb|EEQ61553.1| ATP-dependent Clp protease [Clostridiales bacterium 1_7_47FAA]
          Length = 193

 Score = 41.9 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 56/181 (30%), Gaps = 31/181 (17%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  ++ ++  +  +D    + + ++SPGGS  AG AI+  +  +K     I      +
Sbjct: 39  VSASLVVAQLLFLESEDPGKDIHLYINSPGGSVSAGFAIYDTMNYIKCDVSTICIGMAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L   A     A   S +            K    ++ +  +++  +  K      
Sbjct: 99  MGAFLLAGGAKGKRFALPNSEIMIHQPSG---GAKGQATEIKIVAENILKTRKKLNDIL- 154

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226
                                     + +   P +            +  EAK+ GLID 
Sbjct: 155 --------------------------AANTGRPIEVIERDTERDNYMSAEEAKEYGLIDE 188

Query: 227 V 227
           +
Sbjct: 189 I 189


>gi|145635952|ref|ZP_01791637.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittAA]
 gi|319897851|ref|YP_004136048.1| ATP-dependent clp protease proteolytic subunit [Haemophilus
           influenzae F3031]
 gi|145266785|gb|EDK06804.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittAA]
 gi|301169432|emb|CBW29032.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Haemophilus influenzae 10810]
 gi|317433357|emb|CBY81736.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae F3031]
          Length = 193

 Score = 41.9 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED     ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  VIFLSGEVEDRMANLIVAQLLFLESEDPTKDINIYINSPGGSVTAGMAIYDTMQFIKPDI 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L    +    A   + V     L  +                   
Sbjct: 89  RTLCIGQACSMGAFLLAGGTAGKRAALPNARVMIHQPLGGFRGQ---------------- 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            +Q+    +    H     ++       ++    +D   + +  
Sbjct: 133 --------------ASDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDTDRDNFMSAE 178

Query: 217 EAKKVGLIDVV 227
           EA+  GL+D V
Sbjct: 179 EAQVYGLVDEV 189


>gi|123967079|ref|YP_001012160.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9515]
 gi|123201445|gb|ABM73053.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9515]
          Length = 204

 Score = 41.9 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 31/178 (17%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
             L+ ++  +  +D    + + ++SPGGS  AG AI+  +Q++      I      +  A
Sbjct: 52  DSLVAQLLFLEAEDPDKDIQIYINSPGGSVTAGLAIYDTMQQISPDVVTICFGVAASMGA 111

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
             L   A    +A   S +     L         ++                        
Sbjct: 112 FLLSGGAKGKRLALPNSRIMIHQPLGGAQGQAVEIE------------------------ 147

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                 +    +         L+SE      +K    ++   + +  EA + GLID V
Sbjct: 148 ------IQAKEILFLKKTLNSLLSEHTGQSLEKINEDTERDYFLSPEEAVQYGLIDKV 199


>gi|83646148|ref|YP_434583.1| 3-hydroxyacyl-CoA dehydrogenase [Hahella chejuensis KCTC 2396]
 gi|83634191|gb|ABC30158.1| 3-hydroxyacyl-CoA dehydrogenase [Hahella chejuensis KCTC 2396]
          Length = 712

 Score = 41.9 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
           D   ++  G+  +G  A ++GL+D +  + +   +   L + +   K  + +        
Sbjct: 179 DAMDMILGGKPVSGERAHELGLVDHIAPRRQFANAA--LAIVRDNPKPHEPSLGGKILNA 236

Query: 262 DLKNLSISSLLEDTIP-LMKQTKVQGLWA---VW 291
            L +  ++S L+  +     ++     +A   +W
Sbjct: 237 SLLSGPVASELQRRLRKRADRSHYPAPYAVVELW 270


>gi|310641963|ref|YP_003946721.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus
           polymyxa SC2]
 gi|309246913|gb|ADO56480.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
           polymyxa SC2]
          Length = 194

 Score = 41.9 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 64/194 (32%), Gaps = 33/194 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + +   I+D  +  +I ++  ++ +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 30  IVFVGATIDDQLANSIIAQLLFLAAEDPEKDIYMYINSPGGSTSAGFAIYDTMQYIKPEV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L++ A     A   S +                            
Sbjct: 90  HTICTGFAASFGAILLLAGAKGKRSALPNSEIMIHQPHGGAQGQ---------------- 133

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            + +    +  +     R+ +E     ++K     D   + +  
Sbjct: 134 --------------ASDIAISAKRILWTREKATRITAERTGQSFEKVEKDMDRDFYMSAQ 179

Query: 217 EAKKVGLIDVVGGQ 230
           EA + G+ID V   
Sbjct: 180 EALEYGVIDQVITS 193


>gi|212709197|ref|ZP_03317325.1| hypothetical protein PROVALCAL_00230 [Providencia alcalifaciens DSM
           30120]
 gi|212688109|gb|EEB47637.1| hypothetical protein PROVALCAL_00230 [Providencia alcalifaciens DSM
           30120]
          Length = 206

 Score = 41.9 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIQLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +           S V     L  Y      ++           
Sbjct: 102 STICMGQACSMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAQE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +         L+++      ++        R  +  
Sbjct: 156 ------------------------ILKVKSRMNELMAQHTGKSIEEISRDTERDRFLSAN 191

Query: 217 EAKKVGLIDVV 227
           EAK+ GL+D +
Sbjct: 192 EAKEYGLVDHI 202


>gi|260905351|ref|ZP_05913673.1| Endopeptidase Clp [Brevibacterium linens BL2]
          Length = 219

 Score = 41.9 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 64/190 (33%), Gaps = 33/190 (17%)

Query: 41  IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
           +   G++ D    E+I R+  +S +DS + + + ++SPGGS     AI   I+ + N   
Sbjct: 46  VVFNGELRDENGMEIISRLILLSAEDSHSDIHLWINSPGGSVPMMHAIADVIETLPNDVV 105

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            +      +A    L+       +A   + +               ++     +++V   
Sbjct: 106 TVAFGWAASAGQFVLMMGTPGKRLALPHARILLHQGSSGIGGAAADIELQSGDLRTV--- 162

Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAE 217
                                          +  ++E+    Y++        R +T  +
Sbjct: 163 ---------------------------RDTVLHRIAEATGKTYERVFEDSLRDRWFTVEQ 195

Query: 218 AKKVGLIDVV 227
           A   GLID +
Sbjct: 196 ALDYGLIDRI 205


>gi|313499614|gb|ADR60980.1| ClpP [Pseudomonas putida BIRD-1]
          Length = 192

 Score = 41.9 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 24  VIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 83

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +      ++     I ++  
Sbjct: 84  STICIGQACSMGAFLLAAGAKGKRHCLPNSRVMIHQPLGGFQGQATDIEIHAQEILNI-- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                             L++       +            + +
Sbjct: 142 ----------------------------KARLNELLAYHTGQDLETIKRDTERDNFMSAS 173

Query: 217 EAKKVGLIDVV 227
            A + GLID V
Sbjct: 174 RAAEYGLIDSV 184


>gi|227486247|ref|ZP_03916563.1| endopeptidase Clp [Anaerococcus lactolyticus ATCC 51172]
 gi|227235658|gb|EEI85673.1| endopeptidase Clp [Anaerococcus lactolyticus ATCC 51172]
          Length = 205

 Score = 41.9 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D  S  +I ++  +  +D    +   ++SPGG   +G AI+  +  +K   
Sbjct: 40  IIFLSGEVRDEVSDIIIAQLLFLESEDPNKDIHFYINSPGGVVTSGLAIYDTMNYIKPDV 99

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S A     +   S +                            
Sbjct: 100 STICIGQAASMGAVLLSSGAKGKRFSLPNSNIMIHQPSGGAQGQ---------------- 143

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGA 216
                            + +  + +        R++SE+           +D     T  
Sbjct: 144 --------------ASDIVIQAEQILKIKANLNRILSENTGKDLATIEKDTDRDFAMTAE 189

Query: 217 EAKKVGLIDVV 227
           EA K GLID V
Sbjct: 190 EALKYGLIDKV 200


>gi|226304378|ref|YP_002764336.1| enoyl-CoA hydratase [Rhodococcus erythropolis PR4]
 gi|226183493|dbj|BAH31597.1| putative enoyl-CoA hydratase [Rhodococcus erythropolis PR4]
          Length = 290

 Score = 41.9 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/219 (8%), Positives = 58/219 (26%), Gaps = 28/219 (12%)

Query: 36  PHVARIAIRGQIEDSQE-------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIF- 87
             VA + +      + +       L    +R   DD    ++++ + P  SA     +  
Sbjct: 16  DSVAVVTLNRPDYRNAQNSVVTYALDAAFQRAVEDDDVKVIVLAGNGPHFSAGH--DLGT 73

Query: 88  ----RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                 ++           V +      +       + +      +    +         
Sbjct: 74  PGRDHHVEYENKATMWWDHVDKPGGDQRFAREMEVYLGMCRRWREIPKPTIAMVQGACIA 133

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
               L      + ++       P   +             +         ++        
Sbjct: 134 GGLMLAWVCDMIVAADDAFFSDPVVRMGIPG-----VEYFAHPWMVGSRFAK-------- 180

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             +L  G  +T   A ++G+++ V  ++++ +  + L  
Sbjct: 181 -EMLFTGDRFTAQRAYEIGMVNRVVARKDLEKETFELAG 218


>gi|84686590|ref|ZP_01014483.1| Protease subunit of ATP-dependent Clp protease [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665503|gb|EAQ11980.1| Protease subunit of ATP-dependent Clp protease [Rhodobacterales
           bacterium HTCC2654]
          Length = 193

 Score = 41.9 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/190 (12%), Positives = 59/190 (31%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     +  ++  +  ++ +  + + ++SPGG   +G +I+  +Q ++ + 
Sbjct: 24  IIFLNGPVHDGMSSLICAQLLFLEAENPSKEIAMYINSPGGVVTSGLSIYDTMQYIRPKV 83

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L + A  +  +   S +        Y                   
Sbjct: 84  STLVIGQAASMGSLLLTAGAPGMRFSLPNSRIMVHQPSGGYQGQ---------------- 127

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                +    ++   K    +  +        ++ V             L         +
Sbjct: 128 ---ATDIMIHAQETQKLKDRLNSIYVKHTGQKLKAV----------VDALERDNFMDPEQ 174

Query: 218 AKKVGLIDVV 227
           AK  GLID +
Sbjct: 175 AKDWGLIDEI 184


>gi|325914956|ref|ZP_08177288.1| protease subunit of ATP-dependent protease [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538849|gb|EGD10513.1| protease subunit of ATP-dependent protease [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 728

 Score = 41.9 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 71/194 (36%), Gaps = 38/194 (19%)

Query: 36  PHVARIAIRGQIEDS--QELIERIERISRDDSATA--LIVSLSSPGGSAYAGEAIFRAIQ 91
             VA + I G I DS   E +  +E   + +  TA  + V ++S GG    G AI+ A+ 
Sbjct: 24  NDVAEVMIYGTIGDSLWSESVSALELAEQINQITASTIHVRINSGGGVVADGIAIYNALS 83

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           +    K  +  V   AAS   LI+ A N +V   +SL+                      
Sbjct: 84  QHAAHK--VVFVDGQAASIASLIAMAGNEVVMYASSLLMVHA------------------ 123

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             ++ +    +     + ++  A               +   +       +   +L+DG 
Sbjct: 124 PHTIAAGNASSFRQYATALDAHA------------GAMLEAYATKTGKRSEVEQLLTDGA 171

Query: 212 --IWTGAEAKKVGL 223
              +TGA+A + G 
Sbjct: 172 DHWYTGAQAVEFGF 185


>gi|328949699|ref|YP_004367034.1| protein of unknown function DUF114 [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450023|gb|AEB10924.1| protein of unknown function DUF114 [Marinithermus hydrothermalis
           DSM 14884]
          Length = 280

 Score = 41.9 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 21/183 (11%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           I+DS++++  I    +D       + L +PGG   A E I  A+++   +  V   V   
Sbjct: 68  IDDSEQVLRAIRMTDKDVPID---LVLHTPGGLVLAAEQIAEALKRHPAK--VTVFVPHY 122

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           A S G LI+ A++ IV  E +++G +            L  L            K     
Sbjct: 123 AMSGGTLIALAADEIVMDENAVLGPVDPQLGQYPAASILKVLETK-------DPKDIEDQ 175

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220
              +   A + +  V  +          E      ++   L     WT        EA+ 
Sbjct: 176 TLILADVARKALDQVKRTVKGLLADKFGE---EKAEEVAALLSQGTWTHDYPISVEEARA 232

Query: 221 VGL 223
           +GL
Sbjct: 233 MGL 235


>gi|28377639|ref|NP_784531.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum WCFS1]
 gi|254555818|ref|YP_003062235.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum JDM1]
 gi|300767608|ref|ZP_07077518.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179799|ref|YP_003923927.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|38257529|sp|Q88YH9|CLPP_LACPL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|28270472|emb|CAD63374.1| endopeptidase Clp, proteolytic subunit [Lactobacillus plantarum
           WCFS1]
 gi|254044745|gb|ACT61538.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum JDM1]
 gi|300494593|gb|EFK29751.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308045290|gb|ADN97833.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 196

 Score = 41.9 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 62/192 (32%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IED  +  +I ++  +   DS   + + ++SPGG   AG AI+  +  +K+  
Sbjct: 29  IIMLSGPIEDNMANAIIAQLLFLDAQDSGKDIYLYINSPGGVVTAGLAIYDTMNFIKSDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++    S       A   S +            +  ++ +         
Sbjct: 89  QTIVMGMAASMASVLASSGTKGKRFALPNSEILIHQPSGGAQGQQTEIEIVAEE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +  +     ++++++     +K           +  
Sbjct: 143 ------------------------ILKTRKKINQILADNSGQSVEKLNHDTERDNYLSAQ 178

Query: 217 EAKKVGLIDVVG 228
           EAK  GLID + 
Sbjct: 179 EAKDYGLIDDIM 190


>gi|304407273|ref|ZP_07388926.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           curdlanolyticus YK9]
 gi|304343714|gb|EFM09555.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           curdlanolyticus YK9]
          Length = 195

 Score = 41.5 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 61/181 (33%), Gaps = 31/181 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  +I ++  ++ DD    + + ++SPGGS  AG AI+  +Q +K     I      +  
Sbjct: 43  ANSIIAQLLFLAADDPEKDISLYINSPGGSITAGMAIYDTMQFIKPDVSTICVGMAASMG 102

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L + A     A   S V     L         ++                       
Sbjct: 103 AFLLTAGAIGKRYALPNSEVMIHQPLGGAEGQASDIEIRAKR------------------ 144

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228
                       +         +++E  N P ++    +D   + +  EA++ GLID V 
Sbjct: 145 ------------ILKMRDKLNGILAERSNQPLERIEKDTDRDYFMSAEEARQYGLIDKVI 192

Query: 229 G 229
            
Sbjct: 193 D 193


>gi|221218018|ref|ZP_03589484.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 72a]
 gi|221191966|gb|EEE18187.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 72a]
          Length = 194

 Score = 41.5 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I DS    +I ++  +  +DS+  + + L+SPGGS  AG AI+  +Q +K   
Sbjct: 30  IIFLSGEINDSKADTVIAQLLFLESEDSSKDIYLYLNSPGGSITAGLAIYDTMQYIKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             I      +  A  L   A     +   S +       
Sbjct: 90  RTICIGQAASMGAFLLAGGAKGKRESLTYSRIMIHQPWG 128


>gi|113866131|ref|YP_724620.1| enoyl-CoA hydratase/carnithine racemase [Ralstonia eutropha H16]
 gi|113524907|emb|CAJ91252.1| Enoyl-CoA hydratase/carnithine racemase [Ralstonia eutropha H16]
          Length = 260

 Score = 41.5 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 63/222 (28%), Gaps = 34/222 (15%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGS 79
           S SS        VA I +     ++       +LI  + R + DDS  A+I+  + P   
Sbjct: 3   SMSSIRYAVRDQVAEIQLDSLPVNALNEAMIDDLIGALRRAAEDDSVRAVILGSAIPR-- 60

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
            +       A+Q+    +                       I A E +  G    L    
Sbjct: 61  RFCAGLRLDAVQQSSPSQLYALVEKLYVGLCEAQFQLKKPSIAAVEGAARGGGMTLAISC 120

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
            +    +        +    + A                            R+V   R  
Sbjct: 121 DMIVAAEDATFGYPEIDVGMIPAIHYTHLP---------------------RIVGRHRAF 159

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
                  L  GR +   EA ++GL+  V  Q +V +   AL 
Sbjct: 160 DL-----LFTGRAFDADEAWRLGLVSRVVPQPDVMREARALA 196


>gi|15617073|ref|NP_240286.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|11386686|sp|P57547|CLPP_BUCAI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|25289846|pir||D84985 endopeptidase Clp (EC 3.4.21.92) [imported] - Buchnera sp.  (strain
           APS)
 gi|10039138|dbj|BAB13172.1| ATP-dependent clp protease proteolytic subunit [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
          Length = 208

 Score = 41.5 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 5/159 (3%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G IED  +  ++ +I  +  ++    + + ++SPGG   +G +I+  +Q VK   
Sbjct: 43  IIFITGAIEDNMANNIVAQILFLEAENPEKDIFLYINSPGGIITSGMSIYDTMQFVKPEI 102

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L S A         S V     L      +     + +  + +  
Sbjct: 103 STICLGQACSMAALLLTSGAKGKRFCLPNSKVMIHQPLG---GYQGQASDIAIHAREIME 159

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
              K              ++ +D     +    + +   
Sbjct: 160 MKKKLNKLMSFHTGQSIKKINKDTERDCFLSANQSIKYG 198


>gi|89100460|ref|ZP_01173322.1| YqeZ [Bacillus sp. NRRL B-14911]
 gi|89084803|gb|EAR63942.1| YqeZ [Bacillus sp. NRRL B-14911]
          Length = 452

 Score = 41.5 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISRDDSA 66
           ++    +L+ + + ++         DN   V  + I   +E      + R    + ++ A
Sbjct: 10  LRRAVTLLAFLGILMIMLIPEKGNADNE-VVYVVPIEETVEKGLYAFLNRAVSTAEENGA 68

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
           +A+I  + +PGG+  A   I + + + + +   ++ V+  A SAG  IS   + I     
Sbjct: 69  SAIIFEMDTPGGAVDAAGKIGKLLAETELK--TVSFVNNQALSAGAYISLNMDEIYMVPG 126

Query: 127 SLVGSIGVLFQ 137
           +++GS  ++ Q
Sbjct: 127 AVMGSAAIIDQ 137


>gi|317124503|ref|YP_004098615.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Intrasporangium calvum DSM 43043]
 gi|315588591|gb|ADU47888.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Intrasporangium calvum DSM 43043]
          Length = 214

 Score = 41.5 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 57/180 (31%), Gaps = 31/180 (17%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
           ++  +  ++  +S +D    + + ++SPGGS  AG AIF  +  + N    +      + 
Sbjct: 40  NANAICAQLLLLSAEDPEKDIWLYINSPGGSISAGMAIFDTMNWIPNDVATVAMGMAASM 99

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
               L +       A   + V                                       
Sbjct: 100 GQFLLSAGTHGKRYATPHARVMMHQPSGGIGG---------------------------- 131

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVV 227
                 +++  + +         L++E      ++    SD  R ++  EAK+ G +D V
Sbjct: 132 --TATDIKIQAEQMLYVKKQMAELIAEHTGQTIEQIEKDSDRDRWFSAQEAKEYGFVDHV 189


>gi|114048055|ref|YP_738605.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
           MR-7]
 gi|123326387|sp|Q0HTK7|CLPP_SHESR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|113889497|gb|ABI43548.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
           MR-7]
          Length = 202

 Score = 41.5 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 49/178 (27%), Gaps = 31/178 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +     + + ++SPGGS  AG AI+  +Q +K     +      +  A  
Sbjct: 52  IVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFL 111

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L             S V     L      +     + +  + +     K           
Sbjct: 112 LAGGEKGKRFCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILGIKHKLNLML------ 162

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229
                                +E    P +            +  +A   GL+D V  
Sbjct: 163 ---------------------AEHTGQPLEVIERDTDRDNFMSATQAVDYGLVDAVMT 199


>gi|212636027|ref|YP_002312552.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           piezotolerans WP3]
 gi|226706473|sp|B8CRF7|CLPP_SHEPW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|212557511|gb|ACJ29965.1| Peptidase S14, ClpP [Shewanella piezotolerans WP3]
          Length = 203

 Score = 41.5 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 51/176 (28%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +     + + ++SPGGS  AG AI+  +Q +K     +      +  A  
Sbjct: 53  IVAQLLFLESESPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFL 112

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L   A         S V     L      +     + +  + +     K           
Sbjct: 113 LAGGAEGKRHCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILGIKNKLNTML------ 163

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227
                                +E    P +            +  EA + GL+D V
Sbjct: 164 ---------------------AEHTGQPIEVIERDTDRDNFMSADEAAEYGLVDSV 198


>gi|32476643|ref|NP_869637.1| ATP-dependent Clp protease proteolytic subunit [Rhodopirellula
           baltica SH 1]
 gi|67460512|sp|Q7UK66|CLPP2_RHOBA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|32447189|emb|CAD77015.1| ATP-dependent clp protease proteolytic subunit [Rhodopirellula
           baltica SH 1]
 gi|327540248|gb|EGF26837.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Rhodopirellula baltica WH47]
          Length = 195

 Score = 41.5 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 31/179 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           S  L+ ++  +  DD    + + ++SPGGS  AG AI+  +Q V             +  
Sbjct: 41  SNALVAQMLFLQADDPKKDIHMYINSPGGSITAGMAIYDTMQFVSCDVATYCIGQAASMG 100

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L + A     A   + +     L                                  
Sbjct: 101 AVLLTAGAKGKRFALPNARIMIHQPLAGMQG----------------------------- 131

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVV 227
              + V++    +         ++ E      +K    +D  R  +  EA   GLID V
Sbjct: 132 -TAREVEIHVAELRRIKQRMNEIMIEHTGHSLEKIEEDTDRDRFMSADEACSYGLIDKV 189


>gi|310657900|ref|YP_003935621.1| clpa-clpp and clpx-clpp ATP-dependent serine protease proteolytic
           subunit [Clostridium sticklandii DSM 519]
 gi|308824678|emb|CBH20716.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Clostridium sticklandii]
          Length = 194

 Score = 41.5 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K     I      +  A  
Sbjct: 44  IVAQLLHLESEDPDKDIFLYINSPGGSITAGMAIYDTMQYIKPDVATICVGMAASMGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     A   S +     L         +                           
Sbjct: 104 LTAGAKGKRFALPNSEIMIHQPLGGTQGQATDIKIHAER--------------------- 142

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                    +    +    ++++    P +K    ++   + +  EAK+ GLID V
Sbjct: 143 ---------IIRMRNKLNEIMADRSGQPLEKIERDTERDFFMSSTEAKEYGLIDEV 189


>gi|296169615|ref|ZP_06851235.1| fatty acid oxidation complex [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895881|gb|EFG75576.1| fatty acid oxidation complex [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 714

 Score = 41.5 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 81/242 (33%), Gaps = 18/242 (7%)

Query: 63  DDSATALI-VSLSSPGGSAYAGEA-----IFRAIQKVKNRKPVITEVHEMAASAGYLISC 116
           D  A  ++ ++L  P GSA          + +A++++   K  +T V   +A   +    
Sbjct: 9   DKDADGIVTLTLDDPTGSANVMNEHYKESMHKAVERLVAEKDSVTGVVITSAKKTFFAGG 68

Query: 117 ASNIIV-AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-------PMKAEPSPFS 168
               ++ A   +       +         L+ LG  + +  +         +        
Sbjct: 69  DLKSMINAGPENAGDVFTEVEDIKRDLRTLETLGKPVVAAINGAALGGGLEIALACHHRI 128

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSE---SRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
             + K + +    V          V+       I      +LS G  +   +AK++GLID
Sbjct: 129 AADVKGLVVGLPEVTLGLLPGGGGVARTVRMFGIQNAFMNILSQGTRFKPDKAKEMGLID 188

Query: 226 VV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
            + G  +E+  +  A          + W+           +    + +  + P + + ++
Sbjct: 189 ELVGSVDELVPAAKAWIKANPDSHEQPWDKKGYKMPGGTPSSPGLAGILPSFPALLRKQL 248

Query: 285 QG 286
           +G
Sbjct: 249 KG 250


>gi|89100779|ref|ZP_01173633.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus sp. NRRL
           B-14911]
 gi|89084537|gb|EAR63684.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus sp. NRRL
           B-14911]
          Length = 193

 Score = 41.5 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I  +I D  +  +I ++  ++ D     + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IIMIGEEINDHVANSVIAQLLFLAADAPDKDISLYINSPGGSTTAGFAIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L++       +   S +     L         ++           
Sbjct: 89  RTICTGMAASFGAMLLLAGTKGKRCSLPNSEIMIHQPLGGARGQATEIEISAKR------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +         ++SE    P +K           +  
Sbjct: 143 ------------------------ILKLREHINGIISEKTGQPVEKVARDTDRDYFMSAE 178

Query: 217 EAKKVGLIDVV 227
           EAK+ G+ID +
Sbjct: 179 EAKEYGIIDTI 189


>gi|254361750|ref|ZP_04977885.1| S14 family endopeptidase ClpP [Mannheimia haemolytica PHL213]
 gi|153093285|gb|EDN74281.1| S14 family endopeptidase ClpP [Mannheimia haemolytica PHL213]
          Length = 197

 Score = 41.5 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 62/199 (31%), Gaps = 33/199 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED+    ++ ++  +  +D    + + ++SPGG   AG AI+  +  +K   
Sbjct: 29  IIFLNGQVEDNMANLIVAQLLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMNFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A     A   + +     L                      
Sbjct: 89  ATLCTGQAASMGAFLLSAGAKGKRFALPHARIMIHQPLGGARGQ---------------- 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                            +Q+  + +        R ++E     Y+K           +  
Sbjct: 133 --------------ATDIQIQAEEILRLKATLTRRMAEHSGQSYEKVLADTERDNFMSAE 178

Query: 217 EAKKVGLIDVVGGQEEVWQ 235
           EA + GLID V        
Sbjct: 179 EAAEYGLIDKVLTSRSEVA 197


>gi|332140445|ref|YP_004426183.1| Protease subunit of ATP-dependent Clp protease [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327550467|gb|AEA97185.1| Protease subunit of ATP-dependent Clp protease [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 153

 Score = 41.5 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 56/178 (31%), Gaps = 32/178 (17%)

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119
           +  ++    + + ++SPGGS  AG AI+  ++ +K     +      +  A  L + A  
Sbjct: 4   LEAENPEKDIFLYINSPGGSVTAGMAIYDTMRFIKPDVSTVCMGQAASMGAFLLSAGAKG 63

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179
                  S V     L  +       +     I S+                        
Sbjct: 64  KRYCLPNSRVMIHQPLGGFQGQASDFEIHAKEILSI------------------------ 99

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV-VGGQEEVWQ 235
                      RL+++     Y+K           +  EAK+ GL+D  +  + +V  
Sbjct: 100 ------KEKLNRLLADHTGQDYEKVARDTDRDNFLSATEAKEYGLVDQVLANRSDVAA 151


>gi|121602655|ref|YP_988860.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
           bacilliformis KC583]
 gi|166201800|sp|A1USA7|CLPP_BARBK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|120614832|gb|ABM45433.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bartonella
           bacilliformis KC583]
          Length = 210

 Score = 41.5 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 39/210 (18%)

Query: 40  RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G +EDS  ++   ++  +  ++    + + ++SPGG   +G AI+  +Q ++   
Sbjct: 37  IIFINGPVEDSMAMLVCAQLLFLEAENPKKEISLYINSPGGVVTSGMAIYDTMQFIRPPI 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L + A     +   + +        +      ++           
Sbjct: 97  STLCMGQAASMGSLLLTAGAKGHRFSLPNARIMVHQPSGGFQGQASDIE----------- 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                                   +         +  +     Y+     L      T  
Sbjct: 146 -------------------RHAQDIIRMKRHLNEIYVQHTGQDYEIIENTLDRDHFMTAE 186

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
           EAK  GLID      +V Q       ++  
Sbjct: 187 EAKMFGLID------DVIQYRAETKKEEKD 210


>gi|281356561|ref|ZP_06243052.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Victivallis
           vadensis ATCC BAA-548]
 gi|281316688|gb|EFB00711.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Victivallis
           vadensis ATCC BAA-548]
          Length = 201

 Score = 41.5 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 56/191 (29%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D     ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +    
Sbjct: 33  IILLGTPIDDDVANLIVAQLLFLQAEDPKKDIDLYINSPGGSVTAGLAIYDTMQILSCDV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L + A+    A   S +                            
Sbjct: 93  KTYCVGQCASMGAVLLCAGAAGKRFALPNSRIMIHQP---------------------WG 131

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
                      +V              S H            P  K    ++   + G  
Sbjct: 132 GAQGTAADMDIQVKEIQRLKAMLNGILSSHS---------GQPIKKIEKDTERDFFMGAE 182

Query: 217 EAKKVGLIDVV 227
           +A K GL+D V
Sbjct: 183 DAVKYGLVDKV 193


>gi|229817802|ref|ZP_04448084.1| hypothetical protein BIFANG_03078 [Bifidobacterium angulatum DSM
           20098]
 gi|229785591|gb|EEP21705.1| hypothetical protein BIFANG_03078 [Bifidobacterium angulatum DSM
           20098]
          Length = 215

 Score = 41.5 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 62/181 (34%), Gaps = 30/181 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    +++ ++SPGGS  A  AI+  +Q +K     +      +
Sbjct: 59  TSADDIMAQLLVLESQDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 118

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L + A    +    + V          + K                         
Sbjct: 119 AAAILLAAGAEGKRLMLPNARVLIHQPAIDQGFGKA------------------------ 154

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226
                  +++    +     W    +++    P ++    +      T +EAK+ G++D 
Sbjct: 155 -----TEIEIQAREMLRMREWLENTLAKHTGQPVERIRKDIEVDTFLTASEAKEYGIVDE 209

Query: 227 V 227
           V
Sbjct: 210 V 210


>gi|153814157|ref|ZP_01966825.1| hypothetical protein RUMTOR_00366 [Ruminococcus torques ATCC 27756]
 gi|317499957|ref|ZP_07958193.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331087820|ref|ZP_08336745.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145848553|gb|EDK25471.1| hypothetical protein RUMTOR_00366 [Ruminococcus torques ATCC 27756]
 gi|316898674|gb|EFV20709.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330409515|gb|EGG88956.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 193

 Score = 41.5 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 54/181 (29%), Gaps = 31/181 (17%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  ++ ++  +  DD    + + ++SPGGS  AG AI+  +Q +K     +      +
Sbjct: 39  VSASVIVAQLLFLEADDPDKDIQLYINSPGGSVTAGMAIYDTMQYIKCDVSTVCIGMAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L         A   + +            +    ++ ++ + +  +  K      
Sbjct: 99  MGAFLLAGGKKGKRFALPNAEIMIHQPSG---GAQGQATEIQIAAEHILRTKQKLNEIL- 154

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226
                                     + +     +            +  EAK  GLID 
Sbjct: 155 --------------------------AANTGQSLETIKADTERDNFMSADEAKAYGLIDE 188

Query: 227 V 227
           V
Sbjct: 189 V 189


>gi|186681465|ref|YP_001864661.1| ATP-dependent Clp protease proteolytic subunit [Nostoc punctiforme
           PCC 73102]
 gi|186463917|gb|ACC79718.1| peptidase S14, ClpP [Nostoc punctiforme PCC 73102]
          Length = 203

 Score = 41.5 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 59/187 (31%), Gaps = 33/187 (17%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            I  +I +  ++I  +  +  DD    + + ++SPGG   +G AIF  +Q +K+    I 
Sbjct: 38  DIDDEIAN--QIIAVMLYLDSDDPGKDIYLYINSPGGMVTSGMAIFDTMQHIKSDVVTIC 95

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                +  +  L +      +A   S +               ++     I  ++     
Sbjct: 96  VGLAASMGSFLLAAGTKGKRLALPHSRIMIHQPSGGTRGQATDIEIEAREILRIRH---- 151

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220
                                         + ++       K     D   + +  EAK+
Sbjct: 152 --------------------------QLNGIYADKTGQTIAKIEKDMDRDFFMSAEEAKE 185

Query: 221 VGLIDVV 227
            GLID V
Sbjct: 186 YGLIDRV 192


>gi|260903025|ref|ZP_05911420.1| serine protease [Vibrio parahaemolyticus AQ4037]
 gi|308108407|gb|EFO45947.1| serine protease [Vibrio parahaemolyticus AQ4037]
          Length = 459

 Score = 41.5 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 7/218 (3%)

Query: 36  PHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ-K 92
             V  + ++G I   +S  L   IE+   +   + +I+ + +PGG   A   I  AI   
Sbjct: 21  NTVWIVPVKGAIGPANSDYLTREIEQAQIN-GVSLVILKMDTPGGLDSAMRDIIHAITTS 79

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
                  +      AASAG  I  AS++   AE + +G+   +      +      G   
Sbjct: 80  TTPIATWVGPSGSRAASAGTYILLASHVAAMAEATNLGAATPVAIGGAPQAPSSDDGKDK 139

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
           ++  S   K       +  P    M + V++ +  +   L              +S+   
Sbjct: 140 ET--SDENKPNAEKSGDQVPAKTAMEKKVINDAKAYIKGLAKLHDRNAQWAEKAVSEAAS 197

Query: 213 WTGAEAKKVGLIDVVGGQ-EEVWQSLYALGVDQSIRKI 249
               EA ++ +IDV+    EE+  ++    V  +   +
Sbjct: 198 LDAEEALELNVIDVIANSPEELVTAINGKSVKVNNLPV 235


>gi|255261268|ref|ZP_05340610.1| Clp protease [Thalassiobium sp. R2A62]
 gi|255103603|gb|EET46277.1| Clp protease [Thalassiobium sp. R2A62]
          Length = 209

 Score = 41.5 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 55/191 (28%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++ +  + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 37  IIFLNGPVHDGMSQLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +    +  +   S V        Y                   
Sbjct: 97  STLVIGQAASMGSLLLTAGEKGMRFSLPNSRVMVHQPSGGYQGQ---------------- 140

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +              +          K    L      +  
Sbjct: 141 --------------ATDIMIHAAETQKLKDRLNSIYVRHTGQTLKKVEAALERDNFMSAE 186

Query: 217 EAKKVGLIDVV 227
           +AK  GLID +
Sbjct: 187 DAKDWGLIDEI 197


>gi|219681825|ref|YP_002468211.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|219682380|ref|YP_002468764.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|257471527|ref|ZP_05635526.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. LSR1 (Acyrthosiphon pisum)]
 gi|219622113|gb|ACL30269.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624668|gb|ACL30823.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|311086200|gb|ADP66282.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. LL01 (Acyrthosiphon pisum)]
 gi|311086777|gb|ADP66858.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. TLW03 (Acyrthosiphon pisum)]
 gi|311087365|gb|ADP67445.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. JF99 (Acyrthosiphon pisum)]
 gi|311087863|gb|ADP67942.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. JF98 (Acyrthosiphon pisum)]
          Length = 208

 Score = 41.5 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 5/159 (3%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G IED  +  ++ +I  +  ++    + + ++SPGG   +G +I+  +Q VK   
Sbjct: 43  IIFITGAIEDNMANNIVAQILFLEAENPEKDIFLYINSPGGIITSGMSIYDTMQFVKPEI 102

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L S A         S V     L      +     + +  + +  
Sbjct: 103 STICLGQACSMAALLLTSGAKGKRFCLPNSKVMIHQPLG---GYQGQASDIAIHAREIME 159

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
              K              ++ +D     +    + +   
Sbjct: 160 MKKKLNKLMSFHTGQSIKKINKDTERDCFLSANQSIKYG 198


>gi|68249290|ref|YP_248402.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 86-028NP]
 gi|161350016|ref|NP_438872.3| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae Rd KW20]
 gi|260581528|ref|ZP_05849336.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
           influenzae RdAW]
 gi|1168977|sp|P43867|CLPP_HAEIN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|81336285|sp|Q4QMK5|CLPP_HAEI8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|1573716|gb|AAC22371.1| ATP-dependent Clp protease, proteolytic subunit (clpP) [Haemophilus
           influenzae Rd KW20]
 gi|68057489|gb|AAX87742.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 86-028NP]
 gi|260091826|gb|EEW75781.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
           influenzae RdAW]
          Length = 193

 Score = 41.5 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 60/190 (31%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED     ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  VIFLSGEVEDRMANLIVAQLLFLESEDPTKDINIYINSPGGSVTAGMAIYDTMQFIKPDI 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L    +    A   + V     L  +      +      I  +  
Sbjct: 89  RTLCIGQACSMGAFLLAGGTAGKRAALPNARVMIHQPLGGFRGQASDIQIHAQEILKI-- 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                               + D +       +  + +                  +  E
Sbjct: 147 -----------------KHTLNDRLAFHTGQGIERIEK----------DTDRDNFMSAEE 179

Query: 218 AKKVGLIDVV 227
           A+  GL+D V
Sbjct: 180 AQAYGLVDEV 189


>gi|295395011|ref|ZP_06805223.1| ATP-dependent Clp protease proteolytic subunit [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972170|gb|EFG48033.1| ATP-dependent Clp protease proteolytic subunit [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 203

 Score = 41.5 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 58/183 (31%), Gaps = 31/183 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
            ++  +  ++  ++ +D    + + ++SPGGS  AG AI+  +Q +K     +      +
Sbjct: 40  SNANAICAQLMLLAAEDPEKDIWLYINSPGGSVTAGMAIYDTMQYIKPDVGTVAMGMAAS 99

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
                L + A     A   + +     L                                
Sbjct: 100 MGQFLLSAGAKGKRFATPHARILMHQPLGGIGG--------------------------- 132

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDV 226
                  +++  +++         + +E      ++ L  +D   W T  EA   G ID 
Sbjct: 133 ---TATDIKIQAELILHMKRQMAEITAEQTGKTVEQILKDNDRDHWFTADEALDYGFIDK 189

Query: 227 VGG 229
           V  
Sbjct: 190 VVT 192


>gi|291550140|emb|CBL26402.1| Protease subunit of ATP-dependent Clp proteases [Ruminococcus
           torques L2-14]
          Length = 252

 Score = 41.5 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 57/210 (27%), Gaps = 34/210 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             ++   E ++ I   D      +  +S GGS   G AI+  +Q+  + K  I       
Sbjct: 43  TSAKHFKELLDAIPETDEIK---IYFNSNGGSVDQGTAIYNMLQQHGSYKTGIVMGGCH- 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
            S  + I  A +  +  + +      +          L     ++     S +       
Sbjct: 99  -SIAFTILQACDKRIMGQGTTAIIHDMWETVTGNAADLRAEADNLDVAMDSCVALFMQRA 157

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
           +    +  +MM                                   +  +A + GLID +
Sbjct: 158 TVSEEELREMMHKT-----------------------------TTLSPQKALEYGLIDEI 188

Query: 228 GGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
           G  ++V      L       K         
Sbjct: 189 GVAQKVEDPDMKLQEVIKENKALQMELKSR 218


>gi|56695904|ref|YP_166255.1| ATP-dependent Clp protease proteolytic subunit [Ruegeria pomeroyi
           DSS-3]
 gi|67460175|sp|Q5LUQ0|CLPP_SILPO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56677641|gb|AAV94307.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruegeria
           pomeroyi DSS-3]
          Length = 209

 Score = 41.5 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 56/191 (29%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G I D     ++ ++  +  ++    + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 38  IIFINGPIHDGMSHLIVAQLLHLEAENPNKEISIYINSPGGVVTSGLSIYDTMQYIKPK- 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                           +       + +     G  G+ F  P  +  + +     +    
Sbjct: 97  -------------CSTLVIGQAASMGSVLLAGGEKGMRFSLPNSRIMVHQPSGGYQG--- 140

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +              +  +            L      +  
Sbjct: 141 -------------QASDIMIHAAETQKLKDRLYDIYVKHTGQTKKAVEKALDRDNFMSPE 187

Query: 217 EAKKVGLIDVV 227
           EAK+ G ID +
Sbjct: 188 EAKEWGHIDEI 198


>gi|330719338|ref|ZP_08313938.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc fallax
           KCTC 3537]
          Length = 202

 Score = 41.5 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 62/193 (32%), Gaps = 31/193 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I ++G++ED  +  ++ ++  +   DS   + + ++SPGGS  AG AI   ++ +K   
Sbjct: 27  IILVQGEVEDQMATSIVAQLLFLEAQDSDKEISMYINSPGGSVTAGLAIVDTMRFIKAPV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S           +       +          D   ++ +    
Sbjct: 87  TTIVMGLAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAAGGTQQTDMAIIAQQL--- 143

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      +     +++SE+   P ++    ++   W +  
Sbjct: 144 -------------------------TKTRERLNKILSENSGQPLEQIRNDTERDYWMSAE 178

Query: 217 EAKKVGLIDVVGG 229
           E    GLID +  
Sbjct: 179 ETLDYGLIDGILT 191


>gi|316936711|gb|ADU60350.1| capsid protein [Wolbachia phage WO]
 gi|316936713|gb|ADU60351.1| capsid protein [Wolbachia phage WO]
          Length = 135

 Score = 41.5 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 49/116 (42%), Gaps = 1/116 (0%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
               +  +++  +Q  V   Y  F++L++ +R +  +K      G  + G +A ++GL D
Sbjct: 2   HMEPMTSESLGSLQKEVGRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 60

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
            V    E   +  ++ +  +    + +   +      ++  ++S + E     ++Q
Sbjct: 61  GVTTFFEFINNHRSVSMITNELTEEGYENCRREILEIIRLCNVSKMPEKIGEFIEQ 116


>gi|56707749|ref|YP_169645.1| ATP-dependent Clp protease proteolytic subunit [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|89256249|ref|YP_513611.1| ATP-dependent Clp protease proteolytic subunit [Francisella
           tularensis subsp. holarctica LVS]
 gi|110670220|ref|YP_666777.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115314706|ref|YP_763429.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           holarctica OSU18]
 gi|118497648|ref|YP_898698.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           novicida U112]
 gi|134302069|ref|YP_001122038.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|156502310|ref|YP_001428375.1| ATP-dependent Clp protease proteolytic subunit [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010854|ref|ZP_02275785.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. holarctica FSC200]
 gi|187931471|ref|YP_001891455.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|194323619|ref|ZP_03057395.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. novicida FTE]
 gi|224456819|ref|ZP_03665292.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254367562|ref|ZP_04983588.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           holarctica 257]
 gi|254369239|ref|ZP_04985251.1| hypothetical protein FTAG_00191 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|254370252|ref|ZP_04986258.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254373013|ref|ZP_04988502.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374463|ref|ZP_04989944.1| hypothetical protein FTDG_00632 [Francisella novicida GA99-3548]
 gi|254874562|ref|ZP_05247272.1| ATP-dependent clp protease proteolytic subunit [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|290953590|ref|ZP_06558211.1| ATP-dependent Clp protease proteolytic subunit [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313091|ref|ZP_06803781.1| ATP-dependent Clp protease proteolytic subunit [Francisella
           tularensis subsp. holarctica URFT1]
 gi|67460184|sp|Q5NH47|CLPP_FRATT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116243138|sp|Q2A3U1|CLPP_FRATH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122325271|sp|Q0BM92|CLPP_FRATO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122971012|sp|Q14IJ9|CLPP_FRAT1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201822|sp|A7NBR6|CLPP_FRATF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201823|sp|A0Q6S9|CLPP_FRATN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201824|sp|A4IYB6|CLPP_FRATW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706451|sp|B2SG18|CLPP_FRATM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56604241|emb|CAG45257.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89144080|emb|CAJ79331.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           holarctica LVS]
 gi|110320553|emb|CAL08640.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115129605|gb|ABI82792.1| endopeptidase Clp [Francisella tularensis subsp. holarctica OSU18]
 gi|118423554|gb|ABK89944.1| ATP-dependent Clp protease subunit P [Francisella novicida U112]
 gi|134049846|gb|ABO46917.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|134253378|gb|EBA52472.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           holarctica 257]
 gi|151568496|gb|EDN34150.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           tularensis FSC033]
 gi|151570740|gb|EDN36394.1| ATP-dependent Clp protease subunit P [Francisella novicida
           GA99-3549]
 gi|151572182|gb|EDN37836.1| hypothetical protein FTDG_00632 [Francisella novicida GA99-3548]
 gi|156252913|gb|ABU61419.1| ATP-dependent Clp protease, proteolytic subunit [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|157122189|gb|EDO66329.1| hypothetical protein FTAG_00191 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|187712380|gb|ACD30677.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|194321983|gb|EDX19465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. novicida FTE]
 gi|254840561|gb|EET18997.1| ATP-dependent clp protease proteolytic subunit [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282158920|gb|ADA78311.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. tularensis NE061598]
 gi|332678356|gb|AEE87485.1| ATP-dependent Clp protease proteolytic subunit [Francisella cf.
           novicida Fx1]
          Length = 201

 Score = 41.5 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 57/198 (28%), Gaps = 33/198 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++ D     +I ++  +  +D    +   ++SPGG   AG  ++  +Q +K   
Sbjct: 32  IVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTMQFIKPDV 91

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L   A     +  +S +     L  +      ++    +I  +K 
Sbjct: 92  STICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKD 151

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216
              K                                +       +               
Sbjct: 152 RLNKVL------------------------------AHHTGQDLETIVKDTDRDNFMMAD 181

Query: 217 EAKKVGLIDVVGGQEEVW 234
           EAK  GLID V    E  
Sbjct: 182 EAKAYGLIDHVIESREAI 199


>gi|170737678|ref|YP_001778938.1| hypothetical protein Bcenmc03_5321 [Burkholderia cenocepacia MC0-3]
 gi|169819866|gb|ACA94448.1| protein of unknown function DUF107 [Burkholderia cenocepacia MC0-3]
          Length = 516

 Score = 41.5 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 69/208 (33%), Gaps = 6/208 (2%)

Query: 40  RIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I    +  ++  ++R +R+ +  A+ + L +PGG   +   I +AI       
Sbjct: 59  VIPVNGAIGPASADFIVRSLDRAAREHAPLAI-LQLDTPGGLDTSMRQIIKAILGSPVPV 117

Query: 98  PVITEVHEMAASAGYLISCASNII--VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
                     A++       ++ +  +A  T+L  +  V F      P     G    + 
Sbjct: 118 AAFVAPGGARAASAGTYIVYASHVAAMAPGTNLGAASPVQFGIGGGAPPGANPGAPRPTG 177

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215
            S       +    +       ++  +  +  +   L              + +    + 
Sbjct: 178 ASGASGVSDAATMLLTDTQSTEIRKAMQDASAYIRGLAQLRGRNAEWAERAVREAVSLSA 237

Query: 216 AEAKKVGLIDVVG-GQEEVWQSLYALGV 242
            EA+   ++D++     ++ + L    V
Sbjct: 238 NEARAQHVVDLIAQDPADLARQLDGRAV 265


>gi|124026830|ref|YP_001015945.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
           NATL1A]
 gi|123961898|gb|ABM76681.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
           NATL1A]
          Length = 218

 Score = 41.5 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 53/179 (29%), Gaps = 31/179 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  L+ ++  +  DD    + + ++SPGGS  AG AI+  +Q+V      I      +  
Sbjct: 63  ADALVAQMLFLEADDPEKDIQLYVNSPGGSVTAGLAIYDTMQQVSPDVITICYGLAASMG 122

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L        +A   S +     L         ++                       
Sbjct: 123 AFLLSGGTKGKRLALPNSRIMIHQPLGGAQGQAVEIE----------------------- 159

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227
                  +    +         L++E       K           +  EA + GLID V
Sbjct: 160 -------IQAKEILYLKETLNSLLAEHTGQNIQKISEDTDRDHFLSPQEAVEYGLIDKV 211


>gi|332523237|ref|ZP_08399489.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332314501|gb|EGJ27486.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 232

 Score = 41.5 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 62/205 (30%), Gaps = 37/205 (18%)

Query: 33  DNSPHVARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
            +   V  + I GQI D      E+  +I +         + + ++SPGG  +A   I+ 
Sbjct: 8   TDEGEVRTLRIEGQIADETWFGDEVTPQIFKNELTSGTGDITLWINSPGGDVFAAAQIYN 67

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
            +   +    VI     +AASA  +I+ A   +  +  +++                   
Sbjct: 68  MLMDYQGDVHVII--DGLAASAASVIAMAGTTVSMSPVAMMMIHN--------------- 110

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
                +      K        +                   +        +   K   L 
Sbjct: 111 ---PWTFAQGEAKDMAKVIEMLGE------------IKESIINAYELRTGLSRTKISHLM 155

Query: 209 DGRIW-TGAEAKKVGLIDVVGGQEE 232
           D   W    +A ++G  D V  ++E
Sbjct: 156 DSESWFNAKKAVELGFADKVLFEKE 180


>gi|241895065|ref|ZP_04782361.1| ATP-dependent Clp protease proteolytic subunit [Weissella
           paramesenteroides ATCC 33313]
 gi|241871783|gb|EER75534.1| ATP-dependent Clp protease proteolytic subunit [Weissella
           paramesenteroides ATCC 33313]
          Length = 197

 Score = 41.5 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 61/194 (31%), Gaps = 33/194 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+IE   +  +I ++  +   D    + + ++SPGG   AG AI+  +  +    
Sbjct: 29  IIMVNGEIESQMATAIIAQLLFLDAQDPDKDIYMYINSPGGEVNAGMAIYDTMNFISADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             IT     + ++    S A         S              +  +            
Sbjct: 89  QTITIGLAASMASVLASSGAKGKRFILPNSQFMIHQPSGGAQGQQTEIAIAAEE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
                                   +  +     ++++++   P+++    ++   W    
Sbjct: 143 ------------------------ILKTRKKLNQILADNTGKPFEEVEKDTERDHWLDAE 178

Query: 217 EAKKVGLIDVVGGQ 230
           E+ + GLID +   
Sbjct: 179 ESLEYGLIDKIMTS 192


>gi|315639062|ref|ZP_07894230.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           upsaliensis JV21]
 gi|315480838|gb|EFU71474.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           upsaliensis JV21]
          Length = 194

 Score = 41.5 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I D     ++ ++  +  +D    + + ++SPGG   +G +I+  +  +K   
Sbjct: 28  IVMLSGEINDDVASSIVAQLLFLEAEDPQKDIYLYINSPGGVITSGFSIYDTMNYIKPDV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     A   S +     L         ++           
Sbjct: 88  CTICIGQAASMGAFLLSCGAKQKRFALPNSRIMIHQPLGGARGQATDIE----------- 136

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                              +    +         +++++ N    K    ++   + +  
Sbjct: 137 -------------------IQAKEILRLKTILNEILAQNTNQKIAKITKDTERDFFMSAV 177

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 178 EAKEYGLIDKV 188


>gi|316936719|gb|ADU60354.1| capsid protein [Wolbachia phage WO]
          Length = 132

 Score = 41.5 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
               +  +++  +Q  VD  Y  FV+L++ +R +  +K      G  + G +A ++GL D
Sbjct: 2   HMEPMTSESLGSLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 60

Query: 226 VVGGQEEVWQ 235
            V    E   
Sbjct: 61  GVTTFFEFIN 70


>gi|24373360|ref|NP_717403.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           oneidensis MR-1]
 gi|60389791|sp|Q8EG19|CLPP_SHEON RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|24347620|gb|AAN54847.1|AE015623_9 ATP-dependent Clp protease, proteolytic subunit [Shewanella
           oneidensis MR-1]
          Length = 202

 Score = 41.5 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 50/178 (28%), Gaps = 31/178 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +     + + ++SPGGS  AG AI+  +Q +K     +      +  A  
Sbjct: 52  IVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFL 111

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L             S V     L      +     + +  + +     K           
Sbjct: 112 LAGGEKGKRFCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILGIKNKLNQML------ 162

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229
                                ++    P +            +  +A + GL+D V  
Sbjct: 163 ---------------------ADHTGQPLEVIERDTDRDNFMSATQAVEYGLVDAVMT 199


>gi|288905956|ref|YP_003431178.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus
           gallolyticus UCN34]
 gi|306831975|ref|ZP_07465130.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|306834099|ref|ZP_07467219.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus bovis
           ATCC 700338]
 gi|325978922|ref|YP_004288638.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288732682|emb|CBI14254.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus
           gallolyticus UCN34]
 gi|304423672|gb|EFM26818.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus bovis
           ATCC 700338]
 gi|304425901|gb|EFM29018.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325178850|emb|CBZ48894.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 196

 Score = 41.5 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 59/192 (30%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 27  IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +  
Sbjct: 87  QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      +     ++++++     +K    ++   W +  
Sbjct: 145 --------------------------KTRQNLEQILADNSGQTLEKVHADAERDNWMSAQ 178

Query: 217 EAKKVGLIDVVG 228
           E  + G ID + 
Sbjct: 179 ETLEYGFIDEIM 190


>gi|153007825|ref|YP_001369040.1| ATP-dependent Clp protease proteolytic subunit [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559713|gb|ABS13211.1| Endopeptidase Clp [Ochrobactrum anthropi ATCC 49188]
          Length = 202

 Score = 41.5 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 63/197 (31%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D+    +  ++  +  ++S   + + ++SPGG   +G AI+  ++ V+   
Sbjct: 33  IIFLNGEVNDTVSALICAQLLFLEAENSKQPINLYINSPGGVVTSGLAIYDTMRYVRAPV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +                     +    S+   + +  + P  +  L    + +     
Sbjct: 93  HTLC--------------------MGTARSMGSFLLMAGE-PGHRAALPNANLLVHQPSG 131

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                    F                 +     RL +E     Y++    L      T  
Sbjct: 132 GFQGQASDIFIHAEEAQR---------TKRLMTRLYAEHCGRTYEEVERALDRDNFMTAE 182

Query: 217 EAKKVGLIDVVGGQEEV 233
              + GLID +  + EV
Sbjct: 183 AGLEWGLIDRILERREV 199


>gi|316936717|gb|ADU60353.1| capsid protein [Wolbachia phage WO]
          Length = 132

 Score = 41.5 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
               +  +++  +Q  VD  Y  F++L++ +R +  +K      G  + G +A ++GL D
Sbjct: 2   HMEPMTSESLGSLQKEVDRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 60

Query: 226 VVGGQEEVWQ 235
            V    E   
Sbjct: 61  GVTTFFEFIN 70


>gi|304319808|ref|YP_003853451.1| Protease subunit of ATP-dependent Clp protease [Parvularcula
           bermudensis HTCC2503]
 gi|303298711|gb|ADM08310.1| Protease subunit of ATP-dependent Clp protease [Parvularcula
           bermudensis HTCC2503]
          Length = 210

 Score = 41.5 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ D     ++ ++  +  D+    +   ++SPGGS  AG A++  ++ ++ + 
Sbjct: 38  IIFLSGQVHDQVSTLIVAQLLFLEADNPKKDIAFYINSPGGSVTAGLAMYDTMRYIRPQI 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +     +AAS G L+  A +  +                             I+    
Sbjct: 98  STMCVG--LAASMGSLLLTAGDKGMR-----FSLPNSRIMVHQPSAGFQGQASDIE---- 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +  +      +  E     Y+      D   + T  
Sbjct: 147 -------------------RHARDIIQTKKRLNEIYVEHTGQDYETIERTLDRDTFMTPE 187

Query: 217 EAKKVGLIDVV 227
           +A   GLID V
Sbjct: 188 DALDFGLIDQV 198


>gi|262174040|ref|ZP_06041716.1| prophage Clp protease-like protein [Vibrio mimicus MB-451]
 gi|261890220|gb|EEY36208.1| prophage Clp protease-like protein [Vibrio mimicus MB-451]
          Length = 677

 Score = 41.5 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 56/199 (28%), Gaps = 34/199 (17%)

Query: 41  IAIRGQIEDSQELIERI-ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV 99
           I I  +I        +    +        +++ + SPGG  + G  I+  + +      V
Sbjct: 26  IYIYDEIGGWGITARQFANDLKSRGDVRNIVLRIHSPGGDVFEGMVIYNLLNQHPAYITV 85

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
                      G   S AS I +  +  ++     +  +                ++   
Sbjct: 86  YI--------DGLAASMASVIAMVGDVVIIPMNAAIMIH------------KPWGIQGGD 125

Query: 160 MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GAEA 218
                     ++                  V   ++      ++   L D   W  G EA
Sbjct: 126 ADDMRRYADLLDQVE------------DSLVSAYTKKTGKTVEEIKQLLDAETWMFGQEA 173

Query: 219 KKVGLIDVVGGQEEVWQSL 237
            ++G  D+V    +   SL
Sbjct: 174 VELGFADMVAEPLQAAASL 192


>gi|195941431|ref|ZP_03086813.1| ATP-dependent Clp protease proteolytic component (clpP-1) [Borrelia
           burgdorferi 80a]
 gi|218249848|ref|YP_002375116.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi ZS7]
 gi|223889055|ref|ZP_03623645.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 64b]
 gi|224532428|ref|ZP_03673055.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi WI91-23]
 gi|225549547|ref|ZP_03770513.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 118a]
 gi|226321916|ref|ZP_03797442.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi Bol26]
 gi|218165036|gb|ACK75097.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi ZS7]
 gi|223885481|gb|EEF56581.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 64b]
 gi|224512638|gb|EEF83012.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi WI91-23]
 gi|225369824|gb|EEG99271.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 118a]
 gi|226233105|gb|EEH31858.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi Bol26]
 gi|312147788|gb|ADQ30447.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi JD1]
 gi|312149314|gb|ADQ29385.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi N40]
          Length = 194

 Score = 41.5 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  +I ++  +  +DS+  + + L+SPGGS  AG AI+  +Q +K   
Sbjct: 30  IIFLSGEINDPKADTVIAQLLFLESEDSSKDIYLYLNSPGGSITAGLAIYDTMQYIKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             I      +  A  L   A     +   S +       
Sbjct: 90  RTICIGQAASMGAFLLAGGAKGKRESLTYSRIMIHQPWG 128


>gi|104781013|ref|YP_607511.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           entomophila L48]
 gi|122403881|sp|Q1ICA8|CLPP_PSEE4 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|95110000|emb|CAK14705.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           entomophila L48]
          Length = 213

 Score = 41.5 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 45  VIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A+        S V     L  +      ++     I ++  
Sbjct: 105 STICIGQACSMGAFLLAAGAAGKRHCLPNSRVMIHQPLGGFQGQATDIEIHAQEILNI-- 162

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                             L++       +            + A
Sbjct: 163 ----------------------------KARLNELLAHHTGQSLETIKRDTERDNFMSAA 194

Query: 217 EAKKVGLIDVV 227
            A + GLID V
Sbjct: 195 RAAEYGLIDSV 205


>gi|116747913|ref|YP_844600.1| hypothetical protein Sfum_0465 [Syntrophobacter fumaroxidans MPOB]
 gi|116696977|gb|ABK16165.1| Nodulation efficiency protein NfeD [Syntrophobacter fumaroxidans
           MPOB]
          Length = 451

 Score = 41.5 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 66/227 (29%), Gaps = 33/227 (14%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISRDDSATALIVSLSS 75
            + +  +     +     S HV  + I+  I    ++ I      S +D A  L++ L +
Sbjct: 28  FLVVGALVLFPFNGCIAGSDHVNIVEIQDTINPGVEDFIRYAVATSEEDGAQFLVILLDT 87

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           PGG   +   I +AI   K    V        A++  +   A+  I A            
Sbjct: 88  PGGLLTSTRGIAQAILNAKVPIVVYVYPSGAQAASAGVFITAAADIAAMAPG-------- 139

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                       +G +   +              +N               +      S 
Sbjct: 140 ----------TNIGAAHPVMGGGENVPSTMDEKVLNDTLAFSRSIAAQRGRNAEWLEQSI 189

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
            R++              T  EA K  +ID+V   +++   +  L  
Sbjct: 190 RRSVSA------------TAEEAFKENVIDLVA--DDLPALMKKLDG 222


>gi|119384010|ref|YP_915066.1| endopeptidase Clp [Paracoccus denitrificans PD1222]
 gi|119373777|gb|ABL69370.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paracoccus
           denitrificans PD1222]
          Length = 209

 Score = 41.5 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     +  ++  +  ++    + + ++SPGG   +G +I+  +Q +K R 
Sbjct: 38  IIFLSGPVHDGMATLISAQLLFLEAENPTKDISMYINSPGGVVTSGLSIYDTMQYIKPR- 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                                + +V  + + +GS+ +    P  +  L    V +     
Sbjct: 97  --------------------VSTLVVGQAASMGSLLLCAGQPGQRFSLPNSRVMVHQPSG 136

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             +  +      ++    L   R  +  
Sbjct: 137 GFQGQATDILIHARETEK---------LKRRLNEIYVKHTGRTLEEVEQALERDRFMSPE 187

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID +
Sbjct: 188 EAKEWGLIDEI 198


>gi|227821606|ref|YP_002825576.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           fredii NGR234]
 gi|227340605|gb|ACP24823.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           fredii NGR234]
          Length = 210

 Score = 41.5 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 60/199 (30%), Gaps = 33/199 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +  ++  +  ++    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 37  IIFLTGPVEDHMATLVCAQLLFLEAENPKKEIALYINSPGGVVTAGMAIYDTMQFIKPAV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +   ++  A   + +                            
Sbjct: 97  STLCIGQAASMGSLLLAAGHKDMRFATPNARIMVHQPSG--------------------- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                      + +         +        V +    R   Y++    L      +  
Sbjct: 136 -------GFQGQASDIERHARDILKMKRRLNEVYVRHCGR--TYEEVEQTLDRDHFMSSD 186

Query: 217 EAKKVGLIDVVGGQEEVWQ 235
           EA   GLID V    E  +
Sbjct: 187 EALDWGLIDKVITSREAIE 205


>gi|218461627|ref|ZP_03501718.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli Kim
           5]
          Length = 194

 Score = 41.5 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 65/196 (33%), Gaps = 38/196 (19%)

Query: 41  IAIRGQIED--SQELIERI--ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           I I G I    +Q++  ++     + DD      + ++SPGG   +G++I   ++ +K +
Sbjct: 29  IFIYGPINQELAQKVCSQLVALAAASDDDIR---IYVNSPGGHVESGDSIHDMVKFIKPK 85

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
             +I      +A A   ++      +    +             +   ++          
Sbjct: 86  VWMIGTGWVASAGALIYVAAPKEQRLCLPNTRFLLHQPSGGTRGMASDIE---------- 135

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215
                               +    +        ++++E+   P DK    +D   W + 
Sbjct: 136 --------------------IQAREIIKMNERLNKIMAEATGQPLDKIAKDTDRDYWLSA 175

Query: 216 AEAKKVGLIDVVGGQE 231
            EAK  GL+  +   +
Sbjct: 176 EEAKDYGLVSRIVTSQ 191


>gi|117921102|ref|YP_870294.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
           ANA-3]
 gi|166214711|sp|A0KYL9|CLPP_SHESA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|117613434|gb|ABK48888.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
           ANA-3]
          Length = 202

 Score = 41.5 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 50/178 (28%), Gaps = 31/178 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +     + + ++SPGGS  AG AI+  +Q +K     +      +  A  
Sbjct: 52  IVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFL 111

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L             S V     L      +     + +  + +     K           
Sbjct: 112 LAGGEKGKRFCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILGIKHKLNLML------ 162

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229
                                SE    P +            +  +A + GL+D V  
Sbjct: 163 ---------------------SEHTGQPLEVIERDTDRDNFMSATQAVEYGLVDAVMT 199


>gi|125718530|ref|YP_001035663.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           sanguinis SK36]
 gi|166214716|sp|A3CPK8|CLPP_STRSV RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|125498447|gb|ABN45113.1| ATP-dependent Clp protease, proteolytic subunit, putative
           [Streptococcus sanguinis SK36]
          Length = 196

 Score = 41.5 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 61/192 (31%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 27  IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D   V+   +  
Sbjct: 87  QTIVMGVAASMGTIIASSGAKGKRFMLPNAEYLIHQPMGGAGSGTQQTDMAIVAEHLL-- 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      + +   ++++E+     ++    ++   W +  
Sbjct: 145 --------------------------RTRNTLEKILAENSGKSVEQIHKDAERDYWMSAQ 178

Query: 217 EAKKVGLIDVVG 228
           E  + G ID + 
Sbjct: 179 ETLEYGFIDEIM 190


>gi|310643050|ref|YP_003947808.1| protein [Paenibacillus polymyxa SC2]
 gi|309248000|gb|ADO57567.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 455

 Score = 41.5 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 70/236 (29%), Gaps = 21/236 (8%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISR 62
             K I     ++  V L  + +S S+  +     V  I +  +IE    + +ER    + 
Sbjct: 9   SRKLIFLTLWIMISVLLLPLVYSGSALAQTKGGAVFVIPVDQEIEQGLGKFMERGFAEAV 68

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           D  A  +++ +++PGG     E + + I+                               
Sbjct: 69  DSKAGLILLDINTPGGRVDTAEKLGKLIKDSPIPTVAYI----------------KGEAA 112

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           +A + +  S   +   P        L     +  + P        S  +          +
Sbjct: 113 SAGSYIALSANKIAMKPGSIIGAAALVDGRGNAITDPKTIAWWKSSMASAAEAGGRNPDI 172

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE-EVWQSL 237
                     VS        +   +      T  EA K+G  D +   E EV Q +
Sbjct: 173 ARGMVDSKTTVSIPEMNFNKENGQIIS---LTSEEALKLGYADHIASSEQEVIQWM 225


>gi|308798991|ref|XP_003074276.1| COG0515: Serine/threonine protein kinase (ISS) [Ostreococcus tauri]
 gi|116000447|emb|CAL50127.1| COG0515: Serine/threonine protein kinase (ISS) [Ostreococcus tauri]
          Length = 742

 Score = 41.5 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 58/199 (29%), Gaps = 31/199 (15%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I+D+     + ++  +        + + ++SPGGS  AG  I+  +Q V    
Sbjct: 571 IVFINGPIDDTASSLAVAQLLFLESASPTAPIWMYVNSPGGSVTAGLGIYDTMQYVSPPI 630

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      + ++  L + A     +   S V                  + +  + + +
Sbjct: 631 HTLCVGQASSMASLLLAAGAKGERRSLPNSRVMLHQPSG---GASGQASDIAIHAQEILN 687

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
              K         N +  ++                             L      + ++
Sbjct: 688 VREKLIHIYMKHTNQEYDKIGMT--------------------------LERDTFMSPSD 721

Query: 218 AKKVGLIDVVGGQEEVWQS 236
           A + GLID V         
Sbjct: 722 ALEFGLIDEVIEHRAAATK 740


>gi|91779015|ref|YP_554223.1| hypothetical protein Bxe_B1082 [Burkholderia xenovorans LB400]
 gi|91691675|gb|ABE34873.1| putative membrane protein [Burkholderia xenovorans LB400]
          Length = 546

 Score = 41.5 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 3/83 (3%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATAL 69
            +     +                  V  I + G I    +  ++  ++R + D+ A   
Sbjct: 37  LLAFGFASCESTVVDVPLRAAVAPNSVVVIPVNGAISPASADFIVRSLQRAA-DERAQLA 95

Query: 70  IVSLSSPGGSAYAGEAIFRAIQK 92
           ++ L +PGG   +   I +AI  
Sbjct: 96  VLQLDTPGGLDTSMRQIIKAILA 118


>gi|327462069|gb|EGF08398.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK1057]
          Length = 196

 Score = 41.5 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 61/192 (31%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D   V+   +  
Sbjct: 87  QTIVMGVAASMGTVIASSGAKGKRFMLPNAEYLIHQPMGGAGSGTQQTDMAIVAEHLL-- 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      + +   ++++E+     ++    ++   W +  
Sbjct: 145 --------------------------RTRNTLEKILAENSGKSVEQIHKDAERDYWMSAQ 178

Query: 217 EAKKVGLIDVVG 228
           E  + G ID + 
Sbjct: 179 ETLEYGFIDEIM 190


>gi|284990114|ref|YP_003408668.1| endopeptidase Clp [Geodermatophilus obscurus DSM 43160]
 gi|284063359|gb|ADB74297.1| Endopeptidase Clp [Geodermatophilus obscurus DSM 43160]
          Length = 208

 Score = 41.5 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 59/181 (32%), Gaps = 31/181 (17%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    + + ++SPGGS  +  AI+  +  V+     +      +
Sbjct: 47  ASANDVMAQLITLESADPDRDITIYINSPGGSFTSLMAIYDTMMFVRPDIQTVCMGQAAS 106

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L +      +A   S V       +       L+     I+ V            
Sbjct: 107 AAAVLLAAGTPGKRLALPYSRVLIHQPSGEAGGQVSDLEIHAAEIQRV------------ 154

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226
                                   +++       D+    +   +I T  EAK+ G++D 
Sbjct: 155 ------------------RAQMEEILARHTGRSVDQVRADIDRDKILTAEEAKEYGIVDA 196

Query: 227 V 227
           V
Sbjct: 197 V 197


>gi|34419242|ref|NP_899255.1| ClpP [Vibrio phage KVP40]
 gi|34332923|gb|AAQ64078.1| ClpP [Vibrio phage KVP40]
          Length = 239

 Score = 41.5 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 47/165 (28%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            I G IE+  +  E ++ +        + + L++PGG+  A   I  AI + K    +  
Sbjct: 21  YINGPIEEPNDYEEMLQILHTASETDLVYLHLNTPGGNFAAACQICDAIMQSKAGAVIAC 80

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
              E+ ++   +    +   V+   + +       Q   +   L +     + +      
Sbjct: 81  AEGEVCSAGTMIFLACNGWHVSPFATFMFHTSSGGQIGKMPDTLKQAKAHEEHLNRVCGL 140

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
                F       +      +  +       +             
Sbjct: 141 LYEPFFDADEIDEIINHNQDLWLTPDEVTERLQLMSKKFESDMKE 185


>gi|216264918|ref|ZP_03436910.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 156a]
 gi|225548921|ref|ZP_03769898.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 94a]
 gi|226321180|ref|ZP_03796719.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 29805]
 gi|215981391|gb|EEC22198.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 156a]
 gi|225370524|gb|EEG99960.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 94a]
 gi|226233413|gb|EEH32155.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 29805]
          Length = 194

 Score = 41.5 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  +I ++  +  +DS+  + + L+SPGGS  AG AI+  +Q +K   
Sbjct: 30  IIFLSGEINDPKADTVIAQLLFLESEDSSKDIYLYLNSPGGSITAGLAIYDTMQYIKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             I      +  A  L   A     +   S +       
Sbjct: 90  RTICIGQAASMGAFLLAGGAKGKRESLTYSRIMIHQPWG 128


>gi|90962143|ref|YP_536059.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           salivarius UCC118]
 gi|227891166|ref|ZP_04008971.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           salivarius ATCC 11741]
 gi|301301246|ref|ZP_07207401.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|116243146|sp|Q1WTA8|CLPP_LACS1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|90821337|gb|ABD99976.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           salivarius UCC118]
 gi|227867040|gb|EEJ74461.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           salivarius ATCC 11741]
 gi|300214827|gb|ADJ79243.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Lactobacillus salivarius CECT 5713]
 gi|300851122|gb|EFK78851.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 197

 Score = 41.5 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 58/192 (30%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D     +I ++  +   DS   + + ++SPGGS  AG AI+  +  V    
Sbjct: 29  IIMVSGEVNDDMANAIIAQLLFLDAQDSEKDIYMYINSPGGSVSAGLAIYDTMNFVNADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++    +       A   S +     L                      
Sbjct: 89  QTIVMGMAASMASVLATAGTKGKRFALPNSEIMIHQPLGGAQGQST-------------- 134

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            +Q+  + +  +     +++++      +            T  
Sbjct: 135 ----------------EIQIAAEHILKTRKLINQILADGSGQDIETINKDTERDNFMTAQ 178

Query: 217 EAKKVGLIDVVG 228
           +A   GLID + 
Sbjct: 179 QAVDYGLIDGIM 190


>gi|56964790|ref|YP_176521.1| ATP-dependent Clp protease proteolytic subunit [Bacillus clausii
           KSM-K16]
 gi|67460456|sp|Q5WDK0|CLPP2_BACSK RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|56911033|dbj|BAD65560.1| ATP-dependent Clp protease proteolytic subunit [Bacillus clausii
           KSM-K16]
          Length = 195

 Score = 41.5 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 31/179 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K     I      +  
Sbjct: 41  ANSIVAQMLFLQAEDPEKDISLYINSPGGSITAGMAIYDTMQFIKPDVSTICIGMAASMG 100

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L + A    +A   S V     L         ++                       
Sbjct: 101 AFLLTAGAKGKRMALPNSEVMIHQPLGGMQGQAADMEIHARR------------------ 142

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227
                       +        ++++E    PY++           T  +AK+ GLID V
Sbjct: 143 ------------IIQMREKLNQIMAERSGQPYERIARDTDRDNFMTAEQAKEYGLIDKV 189


>gi|261346364|ref|ZP_05974008.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Providencia
           rustigianii DSM 4541]
 gi|282565678|gb|EFB71213.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Providencia
           rustigianii DSM 4541]
          Length = 206

 Score = 41.5 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +           S V     L  Y      ++           
Sbjct: 102 STICMGQACSMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAQE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 156 ------------------------ILKVKSRMNELMAHHTGKSIEEISRDTERDRFLSAN 191

Query: 217 EAKKVGLIDVV 227
           EAK+ GL+D +
Sbjct: 192 EAKEYGLVDHI 202


>gi|18976612|ref|NP_577969.1| hypothetical protein PF0240 [Pyrococcus furiosus DSM 3638]
 gi|18892179|gb|AAL80364.1| hypothetical protein PF0240 [Pyrococcus furiosus DSM 3638]
          Length = 280

 Score = 41.1 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 67/181 (37%), Gaps = 12/181 (6%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+E++  I    +D     +I    +PGG   A   I +A++       VI   + M
Sbjct: 73  IEDSEEVLRAIRMAPKDKPIDLII---HTPGGLVLAATQIAKALKDHPAETRVIVPHYAM 129

Query: 107 AASAGYLISCASNIIVAAETSLVGSIG-VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           +   G LI+ A++ I+    +++G +   L QYP             + V    +     
Sbjct: 130 SG--GTLIALAADKIIMDPHAVLGPVDPQLGQYPAPSIIKAVEQKGAEKVDDQTLILADV 187

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL-I 224
               +      +   + D       R +++            +     T   A+++GL +
Sbjct: 188 AKKAIKQVQDFLYDLLKDKYGEEKARELAQ-----ILTEGRWTHDYPITVEHARELGLEV 242

Query: 225 D 225
           D
Sbjct: 243 D 243


>gi|18310375|ref|NP_562309.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           perfringens str. 13]
 gi|110799833|ref|YP_696088.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           perfringens ATCC 13124]
 gi|110803073|ref|YP_698704.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           perfringens SM101]
 gi|168207806|ref|ZP_02633811.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens E str. JGS1987]
 gi|168212102|ref|ZP_02637727.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens B str. ATCC 3626]
 gi|168215325|ref|ZP_02640950.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens CPE str. F4969]
 gi|168217824|ref|ZP_02643449.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens NCTC 8239]
 gi|169342288|ref|ZP_02863366.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens C str. JGS1495]
 gi|182627116|ref|ZP_02954834.1| CAAX amino terminal protease family protein [Clostridium
           perfringens D str. JGS1721]
 gi|21759067|sp|Q8XKK1|CLPP_CLOPE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|123146116|sp|Q0ST53|CLPP_CLOPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|123148745|sp|Q0TQK2|CLPP_CLOP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|18145055|dbj|BAB81099.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           perfringens str. 13]
 gi|110674480|gb|ABG83467.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens ATCC 13124]
 gi|110683574|gb|ABG86944.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens SM101]
 gi|169299615|gb|EDS81674.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens C str. JGS1495]
 gi|170660863|gb|EDT13546.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens E str. JGS1987]
 gi|170709986|gb|EDT22168.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens B str. ATCC 3626]
 gi|170713287|gb|EDT25469.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens CPE str. F4969]
 gi|177907505|gb|EDT70163.1| CAAX amino terminal protease family protein [Clostridium
           perfringens D str. JGS1721]
 gi|182380151|gb|EDT77630.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens NCTC 8239]
          Length = 194

 Score = 41.1 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 66/191 (34%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D     ++ ++  +  +D    + + ++SPGGS  +G AI+  +Q +K   
Sbjct: 30  IIMLSGEVNDVTANLVVAQLLFLESEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S A     A   + +     L  +      +D     I  +  
Sbjct: 90  STICIGMAASMGAFLLSSGAKGKRFALPNAEIMIHQPLGGFQGQATDIDIHAKRILKI-- 147

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                            +++SE+ N P +K    +        +
Sbjct: 148 ----------------------------KDKLNQILSENTNQPLEKIKVDVERDYFMEAS 179

Query: 217 EAKKVGLIDVV 227
           EA + GLID V
Sbjct: 180 EAVEYGLIDKV 190


>gi|121612255|ref|YP_999911.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|167004871|ref|ZP_02270629.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|166201812|sp|A1VXS0|CLPP_CAMJJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|87250345|gb|EAQ73303.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 81-176]
          Length = 194

 Score = 41.1 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  ++ ++  +  +D    + + ++SPGG   +G +I+  +  +K   
Sbjct: 28  IIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     A   S +     L         ++           
Sbjct: 88  CTICIGQAASMGAFLLSCGAEGKRFALPNSRIMIHQPLGGARGQATDIE----------- 136

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
                              +    +         +++++      K    ++   +    
Sbjct: 137 -------------------IQAKEILRLKTILNDILAKNTKQKVAKIAKDTERDFFMSTQ 177

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 178 EAKEYGLIDKV 188


>gi|310659088|ref|YP_003936809.1| membrane bound hydrolase [Clostridium sticklandii DSM 519]
 gi|308825866|emb|CBH21904.1| putative membrane bound hydrolase [Clostridium sticklandii]
          Length = 427

 Score = 41.1 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSL 73
            L+   ++     S     S +V  I I G++       + E IE    + +A  ++  +
Sbjct: 4   ILLIFALMLSIIPSLSFGASDNVYVIEISGEVNPGMLNYVRENIEDA-NNKNADLILFEV 62

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVI 100
            + GG   + E I + I K K +    
Sbjct: 63  DTLGGRIDSAEKISQEILKSKVKTASY 89


>gi|119512063|ref|ZP_01631157.1| ATP-dependent Clp protease proteolytic subunit [Nodularia spumigena
           CCY9414]
 gi|119463289|gb|EAW44232.1| ATP-dependent Clp protease proteolytic subunit [Nodularia spumigena
           CCY9414]
          Length = 197

 Score = 41.1 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 60/187 (32%), Gaps = 33/187 (17%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            +  +I +  ++I  +  +  DD    + + ++SPGG   +G AIF  +Q +K+    I 
Sbjct: 38  DVDDEIAN--QIIAVMLYLDSDDPGKDIYLYINSPGGMVTSGMAIFDTMQHIKSDVVTIC 95

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                +  +  L +      +A   S +               ++     I  ++     
Sbjct: 96  VGLAASMGSFLLAAGTKGKRMALPHSRIMIHQPSGGTRGQASDIEIEAREILRIRH---- 151

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220
                                         + +E       K     D   + + AEAK+
Sbjct: 152 --------------------------QLNGIYAEKTGQDISKIEKDMDRDFFMSAAEAKE 185

Query: 221 VGLIDVV 227
            GLID V
Sbjct: 186 YGLIDRV 192


>gi|316936725|gb|ADU60357.1| capsid protein [Wolbachia phage WO]
          Length = 135

 Score = 41.1 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
               +  +++  +Q  VD  Y  F++L++ +R +  +K      G  + G +A ++GL D
Sbjct: 2   HMEPMTSESLGSLQKEVDRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 60

Query: 226 VVGGQEEVWQ 235
            V    E   
Sbjct: 61  GVTTFFEFIN 70


>gi|298243372|ref|ZP_06967179.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
 gi|297556426|gb|EFH90290.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
          Length = 215

 Score = 41.1 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 67/191 (35%), Gaps = 31/191 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I   I+D  + + I  +  +  +DS+  + + L+SPGGS  AG AI+  +Q +K   
Sbjct: 50  IILIGKPIDDMVAYQTIMLLLYLEHEDSSQDISLYLNSPGGSVTAGLAIYDTMQYIKPDV 109

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +     M+ ++  L   A     +   S +     L          D    + + +  
Sbjct: 110 STVCVGMAMSMASVLLAGGAKGKRFSLPNSTILIHQPLISGEIAGQASDIEIEAREII-- 167

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      +      L+++    P ++    SD   + T  
Sbjct: 168 --------------------------RTRSELNELLAKHTGQPVERIAQDSDRDNYMTAH 201

Query: 217 EAKKVGLIDVV 227
           +A + GLID V
Sbjct: 202 QAVEYGLIDEV 212


>gi|189485256|ref|YP_001956197.1| ATP-dependent Clp protease protease subunit P [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287215|dbj|BAG13736.1| ATP-dependent Clp protease protease subunit P [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 203

 Score = 41.1 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 30/187 (16%)

Query: 44  RGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            G +       LI ++  +  +D    + + ++SPGG   AG A++  +Q +K+    I 
Sbjct: 38  DGAVTTDSANVLIAQLLYLDSEDQGKDISLYINSPGGMVSAGLAVYDTMQFIKSPITTIC 97

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
               M+  A  L +       A   S +     L     +   +  + +  K + S+  K
Sbjct: 98  MGMAMSFGAVLLAAGTKGKRYALTHSRIMIHQPLIYGGGLSGTVSDIDIEAKELVSTKQK 157

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKK 220
                                         +++E      ++           +  EAK+
Sbjct: 158 ---------------------------LSGIIAEHTGKTSERVLKDTDRNCYMSAQEAKE 190

Query: 221 VGLIDVV 227
            GLID V
Sbjct: 191 YGLIDEV 197


>gi|152995749|ref|YP_001340584.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinomonas
           sp. MWYL1]
 gi|254763795|sp|A6VW20|CLPP_MARMS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|150836673|gb|ABR70649.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinomonas
           sp. MWYL1]
          Length = 210

 Score = 41.1 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 44  VIFLVGQVEDHMANLVVAQLLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 103

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A+        S V     L  Y      ++     I S+K 
Sbjct: 104 STMCIGQAASMGALLLTAGAAGKRYCLPNSRVMIHQPLGGYQGQASDIEIHTREILSIKH 163

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             ++S     P ++              
Sbjct: 164 ------------------------------KLNEIISFHTGKPIEQVALDTDRDNFMNPQ 193

Query: 217 EAKKVGLIDVV 227
            AK  GLID +
Sbjct: 194 TAKDYGLIDEI 204


>gi|220931192|ref|YP_002508100.1| periplasmic serine protease (ClpP class) [Halothermothrix orenii H
           168]
 gi|219992502|gb|ACL69105.1| periplasmic serine protease (ClpP class) [Halothermothrix orenii H
           168]
          Length = 268

 Score = 41.1 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS++++  I   S D     +++ + +PGG   A E I  AI+K  ++  VI   + M
Sbjct: 67  IEDSEDILRAIRMTSDDKK---IVIVIHTPGGLVLAAEQIAHAIKKHPSKVTVIVPHYAM 123


>gi|168186116|ref|ZP_02620751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum C str. Eklund]
 gi|169296133|gb|EDS78266.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum C str. Eklund]
          Length = 195

 Score = 41.1 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 55/180 (30%), Gaps = 31/180 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K     I      +  A  
Sbjct: 44  VVAQLLFLEAEDPDKDIYLYINSPGGSITAGMAIYDTMQYIKPDVSTICIGMAASMGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     A   S +     L  +      +      I  +K    K           
Sbjct: 104 LTAGAKGKRFALPNSEIMIHQPLGGFQGQATDIGIHANRILKIKDKLNKIL--------- 154

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQE 231
                                SE    P +     +         EAK+ GLID V    
Sbjct: 155 ---------------------SERTGKPLEVIKKDVERDNFMEAEEAKEYGLIDDVITSR 193


>gi|22124934|ref|NP_668357.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis KIM
           10]
 gi|45440623|ref|NP_992162.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51595309|ref|YP_069500.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808643|ref|YP_652559.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           Antiqua]
 gi|108811098|ref|YP_646865.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           Nepal516]
 gi|145600052|ref|YP_001164128.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           Pestoides F]
 gi|149364997|ref|ZP_01887032.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           pestis CA88-4125]
 gi|153950622|ref|YP_001402052.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|162419837|ref|YP_001607420.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           Angola]
 gi|165926613|ref|ZP_02222445.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165935884|ref|ZP_02224454.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166010967|ref|ZP_02231865.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166212961|ref|ZP_02238996.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167398957|ref|ZP_02304481.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167421692|ref|ZP_02313445.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167423463|ref|ZP_02315216.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|170025451|ref|YP_001721956.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|186894326|ref|YP_001871438.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930187|ref|YP_002348062.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           CO92]
 gi|229838761|ref|ZP_04458920.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896085|ref|ZP_04511255.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis Pestoides A]
 gi|229899329|ref|ZP_04514472.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229901327|ref|ZP_04516449.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis Nepal516]
 gi|270489513|ref|ZP_06206587.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis KIM D27]
 gi|294504888|ref|YP_003568950.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           Z176003]
 gi|21759072|sp|Q8ZC65|CLPP_YERPE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|60389537|sp|Q66DT4|CLPP_YERPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122980282|sp|Q1CL65|CLPP_YERPN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|123072666|sp|Q1C4K8|CLPP_YERPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214723|sp|A4TPE3|CLPP_YERPP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|167008652|sp|A7FLC4|CLPP_YERP3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|21957773|gb|AAM84608.1|AE013706_3 ATP-dependent proteolytic subunit of clpA-clpP serine protease,
           heat shock protein F21.5 [Yersinia pestis KIM 10]
 gi|45435480|gb|AAS61039.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           pestis biovar Microtus str. 91001]
 gi|51588591|emb|CAH20199.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease,
           heat shock protein F21.5 [Yersinia pseudotuberculosis IP
           32953]
 gi|108774746|gb|ABG17265.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           pestis Nepal516]
 gi|108780556|gb|ABG14614.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           pestis Antiqua]
 gi|115348798|emb|CAL21752.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           pestis CO92]
 gi|145211748|gb|ABP41155.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           pestis Pestoides F]
 gi|149291410|gb|EDM41484.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           pestis CA88-4125]
 gi|152962117|gb|ABS49578.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pseudotuberculosis IP 31758]
 gi|162352652|gb|ABX86600.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis Angola]
 gi|165916029|gb|EDR34636.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165921541|gb|EDR38738.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165989967|gb|EDR42268.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166205748|gb|EDR50228.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166960611|gb|EDR56632.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167051461|gb|EDR62869.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167057633|gb|EDR67379.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|169751985|gb|ACA69503.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pseudotuberculosis YPIII]
 gi|186697352|gb|ACC87981.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pseudotuberculosis PB1/+]
 gi|229681256|gb|EEO77350.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis Nepal516]
 gi|229687731|gb|EEO79804.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229695127|gb|EEO85174.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701008|gb|EEO89037.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis Pestoides A]
 gi|262362954|gb|ACY59675.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           D106004]
 gi|262366873|gb|ACY63430.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           D182038]
 gi|270338017|gb|EFA48794.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis KIM D27]
 gi|294355347|gb|ADE65688.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           Z176003]
 gi|320016343|gb|ADV99914.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 207

 Score = 41.1 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  +  ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  IIFLTGQVEDHMANLITAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +      ++           
Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 156 ------------------------ILKVKSRMNELMAYHTGKSLEEIERDTERDRFLSAE 191

Query: 217 EAKKVGLIDVVGGQEE 232
           ++ + GL+D V  + +
Sbjct: 192 QSVEYGLVDSVFTRRD 207


>gi|109947464|ref|YP_664692.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           acinonychis str. Sheeba]
 gi|123066220|sp|Q17XD3|CLPP_HELAH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|109714685|emb|CAJ99693.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
           acinonychis str. Sheeba]
          Length = 195

 Score = 41.1 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I DS    ++ ++  +  +D    + + ++SPGG   +G +I+  +  ++   
Sbjct: 29  IVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A     +   S +     L         ++ +         
Sbjct: 89  STICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +         +++++     ++    +D   + +  
Sbjct: 143 ------------------------IIRLKGLMNSILAQNSKQSLERIAKDTDRDFYMSAL 178

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 179 EAKEYGLIDKV 189


>gi|57640065|ref|YP_182543.1| hypothetical protein TK0130 [Thermococcus kodakarensis KOD1]
 gi|57158389|dbj|BAD84319.1| hypothetical protein, conserved, DUF114 family [Thermococcus
           kodakarensis KOD1]
          Length = 280

 Score = 41.1 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 5/105 (4%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+E++  I    +D     +I    +PGG   A   I RA+++      VI   + M
Sbjct: 73  IEDSEEVLRAIRSAPKDKPIDLII---HTPGGLVLAATQIARALKEHPAETRVIVPHYAM 129

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           +   G LI+ A++ I+    +++G +            L  +   
Sbjct: 130 SG--GTLIALAADKIIMDPNAVLGPVDPQLGQYPAPSILRAVEKK 172


>gi|300770662|ref|ZP_07080541.1| probable enoyl-CoA hydratase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300763138|gb|EFK59955.1| probable enoyl-CoA hydratase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 255

 Score = 41.1 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 63/243 (25%), Gaps = 36/243 (14%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
            EL + I     D +   +I+         +        + +    +  I     M    
Sbjct: 31  DELTQAILEAEEDPAIEGIILHGKEN---FFTSGLDLITLYQYNEEQMKIFWSRFMTLIH 87

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
                   ++   +  S  G          +    D   ++         +         
Sbjct: 88  TLTSFSKPSVAAISGHSPAGGC-------VLGICCDYRVMARGEFIIGLNEVPVGIVVPP 140

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
           +   +         +Y +                  L +G++    +A +VGLID V   
Sbjct: 141 SIFKLYSFWIGQRLAYQY------------------LLEGKLLNPEKALEVGLIDEVVDP 182

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
           + +  +         +RKIK     +   +   K      LLE      +    Q L   
Sbjct: 183 DRIRTAA--------LRKIKSVTQFEKNSWRSTKQNLRKELLESITQQQEAAIDQVLKQW 234

Query: 291 WNP 293
           W P
Sbjct: 235 WAP 237


>gi|15594956|ref|NP_212745.1| ATP-dependent Clp protease proteolytic subunit [Borrelia
           burgdorferi B31]
 gi|18202051|sp|O51556|CLPP1_BORBU RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|2688532|gb|AAC66964.1| ATP-dependent Clp protease proteolytic component (clpP-1) [Borrelia
           burgdorferi B31]
          Length = 197

 Score = 41.1 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  +I ++  +  +DS+  + + L+SPGGS  AG AI+  +Q +K   
Sbjct: 33  IIFLSGEINDPKADTVIAQLLFLESEDSSKDIYLYLNSPGGSITAGLAIYDTMQYIKPDV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             I      +  A  L   A     +   S +       
Sbjct: 93  RTICIGQAASMGAFLLAGGAKGKRESLTYSRIMIHQPWG 131


>gi|328956747|ref|YP_004374133.1| ATP-dependent Clp protease proteolytic subunit [Carnobacterium sp.
           17-4]
 gi|328673071|gb|AEB29117.1| ATP-dependent Clp protease proteolytic subunit [Carnobacterium sp.
           17-4]
          Length = 197

 Score = 41.1 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 33/198 (16%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G ++D     +I ++  +   DS   + + ++SPGGS  AG AIF  +  +K   
Sbjct: 29  IIMLSGPVDDDLANAVIAQLLFLDAQDSEKDIYIYINSPGGSVTAGLAIFDTMNFIKADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +       A   + +               ++           
Sbjct: 89  QTIAMGMAASMGSFLLTAGTKGKRYALPNAEIMIHQPSGGSQGQATEIEIAAR------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   + ++     +++S+    P +            +  
Sbjct: 142 -----------------------HILNTRERLNKILSDRTGQPIEVIKRDTDRDNYMSAE 178

Query: 217 EAKKVGLIDVVGGQEEVW 234
           +AK  GLID +       
Sbjct: 179 DAKAYGLIDEIMENSSAL 196


>gi|327348449|gb|EGE77306.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 222

 Score = 41.1 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 49/149 (32%), Gaps = 5/149 (3%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++++  S  ++ ++  +  D+    + + ++SPGGS  AG A++  +  +    
Sbjct: 62  IVCLNGEVDETLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISAPV 121

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV---SIKS 154
             I      +  +  L             S V        Y      +         ++ 
Sbjct: 122 STICVGQAASMGSLLLCGGHPGKRYCLPHSSVMVHQPSGGYFGQATDIAIHAKEILRVRR 181

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
             +   K   +    ++     M +D   
Sbjct: 182 QLNEIYKLHLTKEMSLDEIEKWMERDYFM 210


>gi|307266641|ref|ZP_07548171.1| membrane-bound serine protease (ClpP class) [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918372|gb|EFN48616.1| membrane-bound serine protease (ClpP class) [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 204

 Score = 41.1 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 65/203 (32%), Gaps = 35/203 (17%)

Query: 38  VARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95
           V  ++I G I    +  +   ++   ++  A+ +++ LS+PGG     + I   I  + +
Sbjct: 33  VYVLSIDGPIVPVVADYIESGLQEAEKN-GASCIVIELSTPGGLYSTTQKIVTKI--LNS 89

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
             PV+  V             A     +A T +  S  V    P  +             
Sbjct: 90  HIPVVVYVSP-----------AGAWAGSAGTFITLSANVAAMAPGSRIGA---------- 128

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWT 214
                       S ++    Q +     +        ++E+R          + + + +T
Sbjct: 129 ---AHPVSMEDDSALSDVQRQKLTHDAAAWIRS----IAENRGRDPKNAEMAVIESKSFT 181

Query: 215 GAEAKKVGLIDVVGG-QEEVWQS 236
             EA    L+D       ++ + 
Sbjct: 182 DTEALNAHLVDFKATNLNDLLKK 204


>gi|251797042|ref|YP_003011773.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
           sp. JDR-2]
 gi|247544668|gb|ACT01687.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. JDR-2]
          Length = 194

 Score = 41.1 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 65/191 (34%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + +   I+D  +  ++ ++  ++ +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 30  IVFLGSAIDDQVANSIVAQLLFLAAEDPDKEISLYINSPGGSTTAGFAIYDTMQYIKPEV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L+S A     A  +S V                            
Sbjct: 90  HTICVGMAASFAAILLLSGAKGKRFALPSSEVMIHQPHGGAQGQ---------------- 133

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            + +    +  +     R+ ++    P +K     D   + +  
Sbjct: 134 --------------ASDIAISAKRILDTRARLNRIAADRTGQPLEKIEKDMDRDYFLSAQ 179

Query: 217 EAKKVGLIDVV 227
           EA   G+ID V
Sbjct: 180 EALDYGIIDQV 190


>gi|72383092|ref|YP_292447.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. NATL2A]
 gi|115311351|sp|Q46ID4|CLPP3_PROMT RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|72002942|gb|AAZ58744.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. NATL2A]
          Length = 194

 Score = 41.1 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 53/179 (29%), Gaps = 31/179 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  L+ ++  +  DD    + + ++SPGGS  AG AI+  +Q+V      I      +  
Sbjct: 39  ADALVAQMLFLEADDPEKDIQLYVNSPGGSVTAGLAIYDTMQQVSPDVITICYGLAASMG 98

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L        +A   S +     L         ++                       
Sbjct: 99  AFLLSGGTKGKRLALPNSRIMIHQPLGGAQGQAVEIE----------------------- 135

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227
                  +    +         L++E       K           +  EA + GLID V
Sbjct: 136 -------IQAKEILYLKETLNSLLAEHTGQNIQKISEDTDRDHFLSPQEAVEYGLIDKV 187


>gi|328470862|gb|EGF41773.1| membrane-bound serine protease [Vibrio parahaemolyticus 10329]
          Length = 459

 Score = 41.1 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 88/249 (35%), Gaps = 18/249 (7%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISR 62
           +K+I T  + L L              +  +  V  + ++G I   +S  L   IE+   
Sbjct: 1   MKRIWTWLLPLLLFA-----------GQTLANTVWIVPVKGAIGPANSDYLTREIEQAQI 49

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQ-KVKNRKPVITEVHEMAASAGYLISCASNII 121
           +   + +I+ + +PGG   A   I  AI          +      AASAG  I  AS++ 
Sbjct: 50  N-GVSLVILKMDTPGGLDSAMRDIIHAITTSTTPIATWVGPSGSRAASAGTYILLASHVA 108

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
             AE + +G+   +      +          +S  S   K          P    M + V
Sbjct: 109 AMAEATNLGAATPVAIGGAPQAPSSDDDKDNES--SDENKPNAEKSGAQVPAKTAMEKKV 166

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSLYAL 240
           ++ +  +   L              +S+       EA ++ +IDV+    EE+  ++   
Sbjct: 167 INDAKAYIKGLAKLHDRNAQWAEKAVSEAASLDAEEALELNVIDVIANSPEELVTAINGK 226

Query: 241 GVDQSIRKI 249
            V  +   +
Sbjct: 227 SVKVNNLPV 235


>gi|316936715|gb|ADU60352.1| capsid protein [Wolbachia phage WO]
          Length = 135

 Score = 41.1 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
               +  +++  +Q  V   Y  F++L++ +R +  +K      G  + G +A ++GL D
Sbjct: 2   HMEPMTSESLGSLQKEVGRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 60

Query: 226 VVGGQEEVWQ 235
            V    E   
Sbjct: 61  GVTTFFEFIN 70


>gi|331211899|ref|XP_003307219.1| ATP-dependent Clp protease proteolytic subunit 2 [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
 gi|309297622|gb|EFP74213.1| ATP-dependent Clp protease proteolytic subunit 2 [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
          Length = 257

 Score = 41.1 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 25/190 (13%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D+    ++ ++  +  +     + + ++SPGGS  AG AI+  +Q V++  
Sbjct: 80  VIFVGGEINDADANLIVAQLLYLEAESP-DPIELYINSPGGSVTAGLAIYDTMQYVRSPV 138

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   S +               +      I  +K 
Sbjct: 139 HTICIGQACSMGSILLGAGAKGFRKALPNSTIMIHQPSGGSSGQASDMAIRANEILRLKK 198

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
             ++       + +                                   L   +   G  
Sbjct: 199 RLIEIYAKHCGKEDESQTDRCNRFE----------------------QALERDKFMDGES 236

Query: 218 AKKVGLIDVV 227
           A+  G+ID V
Sbjct: 237 AQAFGIIDQV 246


>gi|114321437|ref|YP_743120.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311052|sp|Q0A6A7|CLPP_ALHEH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|114227831|gb|ABI57630.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 214

 Score = 41.1 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 58/201 (28%), Gaps = 33/201 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  ++ ++  +  ++    + + ++SPGG+  AG AI+  +Q +K   
Sbjct: 44  VIFLVGPVEDHMANLIVAQLLFLESENPDKDIHIYINSPGGAVTAGLAIYDTMQFIKPDV 103

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L         A   S +     L  +                   
Sbjct: 104 STVCIGQAASMGALLLTGGTKGKRYALPNSRMMIHQPLGGFQGQ---------------- 147

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                            V +    +        R+++       +            +  
Sbjct: 148 --------------ATDVDIHAREILDMRDRLNRIMAHHTGQDMETIARDTDRDNFMSPD 193

Query: 217 EAKKVGLIDVVGGQEEVWQSL 237
            A + GL+D V    +     
Sbjct: 194 TACEYGLVDAVLADRKALDQA 214


>gi|153011350|ref|YP_001372564.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Ochrobactrum anthropi
           ATCC 49188]
 gi|151563238|gb|ABS16735.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Ochrobactrum anthropi
           ATCC 49188]
          Length = 738

 Score = 41.1 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 74/245 (30%), Gaps = 22/245 (8%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVIT 101
            +E  QEL   I+ ++ DD    ++++    S  G A     E +F+  QK K + P   
Sbjct: 31  TVEAMQELNSIIDAVTADDKIKGVVITSGKDSFSGGADLTMLEGMFKEFQKQKAKDPQGA 90

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                                        +   +     +             +      
Sbjct: 91  VQTLFDNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARV 138

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221
              +P  ++    V++             RL ++      D   +++ G   T   AK +
Sbjct: 139 VSDAPGVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAM 193

Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
           GL+  +   +++ ++   L     ++ ++ W+             +  + L      + +
Sbjct: 194 GLVTEIAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILR 252

Query: 282 TKVQG 286
            +  G
Sbjct: 253 RETSG 257


>gi|72382719|ref|YP_292074.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. NATL2A]
 gi|124026440|ref|YP_001015555.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. NATL1A]
 gi|115311347|sp|Q46JF7|CLPP2_PROMT RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|72002569|gb|AAZ58371.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. NATL2A]
 gi|123961508|gb|ABM76291.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
           NATL1A]
          Length = 200

 Score = 41.1 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 65/189 (34%), Gaps = 32/189 (16%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            +   I +S  L+ ++  +  +DS+  + + ++SPGGS  AG AI+  ++ VK+    I 
Sbjct: 38  EVNDGIANS--LVAQMLYLDSEDSSKPIYLYINSPGGSVTAGLAIYDTMKYVKSDLVTIC 95

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                +  A  L +      +A   S +     L      +    ++             
Sbjct: 96  VGLAASMGAFLLSAGTKGKRLALPHSRIMIHQPLGGTAQRQASDIEIEAR---------- 145

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220
                               +        + ++E     Y+K    +D   + +  EAK 
Sbjct: 146 -------------------EILRIKEMLNKSMAEMTGQTYEKIEKDTDRDYFLSAEEAKN 186

Query: 221 VGLIDVVGG 229
            GLID V  
Sbjct: 187 YGLIDRVIT 195


>gi|283797647|ref|ZP_06346800.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           sp. M62/1]
 gi|291074652|gb|EFE12016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           sp. M62/1]
 gi|295092868|emb|CBK78975.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           cf. saccharolyticum K10]
 gi|295114657|emb|CBL35504.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [butyrate-producing bacterium SM4/1]
          Length = 193

 Score = 41.1 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 57/181 (31%), Gaps = 31/181 (17%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  ++ ++  +  +D    + + ++SPGGS  AG AI+  +  +K     I      +
Sbjct: 39  VSASLIVAQLLFLESEDPNKDIHLYINSPGGSVTAGMAIYDTMNYIKCDVSTICVGMAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L   A    +A   + V            +    ++ +  +++  +  K      
Sbjct: 99  MGAFLLAGGAKGKRLALPNAEVMIHQPSG---GARGQATEIQIVAENILRTKKKLNEIL- 154

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226
                                     + +   PY+            T  EA K GLID 
Sbjct: 155 --------------------------AANTGQPYEVIERDTDRDNYMTAEEALKYGLIDR 188

Query: 227 V 227
           V
Sbjct: 189 V 189


>gi|119593590|gb|EAW73184.1| chloride channel, calcium activated, family member 4, isoform CRA_a
           [Homo sapiens]
          Length = 917

 Score = 41.1 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 73/265 (27%), Gaps = 21/265 (7%)

Query: 46  QIEDSQELIERIER-----------ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
            I +S++    I             +        L++  S   G       + +A +   
Sbjct: 275 VISNSEDFKNTIPMVTPPPPPVFSLLKISQRIVCLVLDKSGSMGGKDRLNRMNQAAKHFL 334

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP-YVKPFLDKLGVSIK 153
            +         M             I + +       +  L  YP         +  + +
Sbjct: 335 LQTVENGSWVGMVHFDSTATIVNKLIQIKSSDERNTLMAGLPTYPLGGTSICSGIKYAFQ 394

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW--FVRLVSESRNIPYDKTL--VLSD 209
            +     + + S    +           +D        V  ++  R           ++ 
Sbjct: 395 VIGELHSQLDGSEVLLLTDGEDNTASSCIDEVKQSGAIVHFIALGRAADEAVIEMSKITG 454

Query: 210 GR-IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
           G   +   EA+  GLID  G        L    +    + +       N W  D   +  
Sbjct: 455 GSHFYVSDEAQNNGLIDAFGALTSGNTDLSQKSLQLESKGL---TLNSNAWMNDTVIID- 510

Query: 269 SSLLEDTIPLMKQTKVQGLWAVWNP 293
           S++ +DT  L+    +    ++W+P
Sbjct: 511 STVGKDTFFLITWNSLPPSISLWDP 535


>gi|119593591|gb|EAW73185.1| chloride channel, calcium activated, family member 4, isoform CRA_b
           [Homo sapiens]
          Length = 918

 Score = 41.1 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 73/265 (27%), Gaps = 21/265 (7%)

Query: 46  QIEDSQELIERIER-----------ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
            I +S++    I             +        L++  S   G       + +A +   
Sbjct: 276 VISNSEDFKNTIPMVTPPPPPVFSLLKISQRIVCLVLDKSGSMGGKDRLNRMNQAAKHFL 335

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP-YVKPFLDKLGVSIK 153
            +         M             I + +       +  L  YP         +  + +
Sbjct: 336 LQTVENGSWVGMVHFDSTATIVNKLIQIKSSDERNTLMAGLPTYPLGGTSICSGIKYAFQ 395

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW--FVRLVSESRNIPYDKTL--VLSD 209
            +     + + S    +           +D        V  ++  R           ++ 
Sbjct: 396 VIGELHSQLDGSEVLLLTDGEDNTASSCIDEVKQSGAIVHFIALGRAADEAVIEMSKITG 455

Query: 210 GR-IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
           G   +   EA+  GLID  G        L    +    + +       N W  D   +  
Sbjct: 456 GSHFYVSDEAQNNGLIDAFGALTSGNTDLSQKSLQLESKGL---TLNSNAWMNDTVIID- 511

Query: 269 SSLLEDTIPLMKQTKVQGLWAVWNP 293
           S++ +DT  L+    +    ++W+P
Sbjct: 512 STVGKDTFFLITWNSLPPSISLWDP 536


>gi|109731121|gb|AAI13690.1| Chloride channel accessory 4 [Homo sapiens]
 gi|109731369|gb|AAI13688.1| Chloride channel accessory 4 [Homo sapiens]
 gi|313883598|gb|ADR83285.1| chloride channel accessory 4 [synthetic construct]
          Length = 917

 Score = 41.1 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 73/265 (27%), Gaps = 21/265 (7%)

Query: 46  QIEDSQELIERIER-----------ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
            I +S++    I             +        L++  S   G       + +A +   
Sbjct: 275 VISNSEDFKNTIPMVTPPPPPVFSLLKISQRIVCLVLDKSGSMGGKDRLNRMNQAAKHFL 334

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP-YVKPFLDKLGVSIK 153
            +         M             I + +       +  L  YP         +  + +
Sbjct: 335 LQTVENGSWVGMVHFDSTATIVNKLIQIKSSDERNTLMAGLPTYPLGGTSICSGIKYAFQ 394

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW--FVRLVSESRNIPYDKTL--VLSD 209
            +     + + S    +           +D        V  ++  R           ++ 
Sbjct: 395 VIGELHSQLDGSEVLLLTDGEDNTASSCIDEVKQSGAIVHFIALGRAADEAVIEMSKITG 454

Query: 210 GR-IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
           G   +   EA+  GLID  G        L    +    + +       N W  D   +  
Sbjct: 455 GSHFYVSDEAQNNGLIDAFGALTSGNTDLSQKSLQLESKGL---TLNSNAWMNDTVIID- 510

Query: 269 SSLLEDTIPLMKQTKVQGLWAVWNP 293
           S++ +DT  L+    +    ++W+P
Sbjct: 511 STVGKDTFFLITWNSLPPSISLWDP 535


>gi|150036262|ref|NP_036260.2| calcium-activated chloride channel regulator 4 [Homo sapiens]
 gi|205831469|sp|Q14CN2|CLCA4_HUMAN RecName: Full=Calcium-activated chloride channel regulator 4;
           AltName: Full=Calcium-activated chloride channel family
           member 4; Short=hCLCA4; AltName: Full=Calcium-activated
           chloride channel protein 2; Short=CaCC-2; Short=hCaCC-2;
           Contains: RecName: Full=Calcium-activated chloride
           channel regulator 4, 110 kDa form; Contains: RecName:
           Full=Calcium-activated chloride channel regulator 4, 30
           kDa form; Flags: Precursor
 gi|37182063|gb|AAQ88834.1| CLCA4 [Homo sapiens]
 gi|56203696|emb|CAI22170.1| chloride channel, calcium activated, family member 4 [Homo sapiens]
          Length = 919

 Score = 41.1 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 73/265 (27%), Gaps = 21/265 (7%)

Query: 46  QIEDSQELIERIER-----------ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
            I +S++    I             +        L++  S   G       + +A +   
Sbjct: 275 VISNSEDFKNTIPMVTPPPPPVFSLLKISQRIVCLVLDKSGSMGGKDRLNRMNQAAKHFL 334

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP-YVKPFLDKLGVSIK 153
            +         M             I + +       +  L  YP         +  + +
Sbjct: 335 LQTVENGSWVGMVHFDSTATIVNKLIQIKSSDERNTLMAGLPTYPLGGTSICSGIKYAFQ 394

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW--FVRLVSESRNIPYDKTL--VLSD 209
            +     + + S    +           +D        V  ++  R           ++ 
Sbjct: 395 VIGELHSQLDGSEVLLLTDGEDNTASSCIDEVKQSGAIVHFIALGRAADEAVIEMSKITG 454

Query: 210 GR-IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
           G   +   EA+  GLID  G        L    +    + +       N W  D   +  
Sbjct: 455 GSHFYVSDEAQNNGLIDAFGALTSGNTDLSQKSLQLESKGL---TLNSNAWMNDTVIID- 510

Query: 269 SSLLEDTIPLMKQTKVQGLWAVWNP 293
           S++ +DT  L+    +    ++W+P
Sbjct: 511 STVGKDTFFLITWNSLPPSISLWDP 535


>gi|160902469|ref|YP_001568050.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Petrotoga
           mobilis SJ95]
 gi|160360113|gb|ABX31727.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Petrotoga
           mobilis SJ95]
          Length = 205

 Score = 41.1 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 58/193 (30%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + +   I D     +I ++  +   D    + + ++SPGGS  +G  I+  +Q VK   
Sbjct: 30  IVFLGTPINDDVANVIIAQLLFLESQDPDKDIFLYINSPGGSVTSGLGIYDTMQYVKPDI 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     +   S +                            
Sbjct: 90  STICIGQAASMGAVLLAAGAKGKRYSLPYSRIMIHQPWG--------------------- 128

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                     +E     +Q+    +         ++S+      +K    ++   +    
Sbjct: 129 ---------GAEGTAIDIQIHAREILRLKDDLNNILSKHTGQSLEKIEKDTERDFFMNAQ 179

Query: 217 EAKKVGLIDVVGG 229
           EA   GLID V  
Sbjct: 180 EALNYGLIDKVIT 192


>gi|70726774|ref|YP_253688.1| hypothetical protein SH1773 [Staphylococcus haemolyticus JCSC1435]
 gi|68447498|dbj|BAE05082.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 288

 Score = 41.1 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 72/231 (31%), Gaps = 39/231 (16%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQELIERIE-RISRD--DSAT-ALIVSLSSPGGSAYAGEA 85
           +   N+ H+  + + G I +   L + I  +  +D  D+    +++ L+S GG  + G  
Sbjct: 15  NETKNNKHI--LTLSGTIANLSFLDDTISAKAVKDSLDNVKEDIVIRLNSGGGDVFEGIE 72

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           I+  ++ + N    I      A++A  +      II+    +++        +       
Sbjct: 73  IYNYLKSLSN-HITIEVTALAASAASLVAMAGDKIIIRTGANMMVHEASTMAFGNKSDIQ 131

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
             L                                 + +     V +  +   +  D+ +
Sbjct: 132 KTLNA-------------------------------LTAIDTSIVDIYHDRTGLDRDEIV 160

Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
            L     W T  EA   G  D    ++ V +    +    + + +      
Sbjct: 161 NLITNETWLTADEAINKGFADEKSSRKSVDKQKEGVKNVGNSKYVAKLKEQ 211


>gi|332284416|ref|YP_004416327.1| putative nodulation efficiency protein D [Pusillimonas sp. T7-7]
 gi|330428369|gb|AEC19703.1| putative nodulation efficiency protein D [Pusillimonas sp. T7-7]
          Length = 465

 Score = 41.1 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 61/202 (30%), Gaps = 13/202 (6%)

Query: 30  HVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
                +P V  + + G I    S  +   +++   + S  A+I  L +PGG   +  AI 
Sbjct: 27  KANAQAPKVTVLQVDGIISPATSDFITRGLQQAVENGSTLAVI-ELDTPGGLDSSMRAII 85

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
           R I                 A++            A+  + +     L     V   +  
Sbjct: 86  RQILASPIPVASFVSPSGARAASAGTFIL-----YASHIAAMTPASNLGAASPVSIGMPG 140

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
            G   +       +      +     +               +      RN  + +   +
Sbjct: 141 AGTETQDDDKGKNEGNKQKSNADTLSSKATNDAAAYIRSLAQL----RGRNADFAE-QAV 195

Query: 208 SDGRIWTGAEAKKVGLIDVVGG 229
            + R  +  EA K G++DVV G
Sbjct: 196 LEARSMSAQEALKAGVVDVVAG 217


>gi|260589157|ref|ZP_05855070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Blautia
           hansenii DSM 20583]
 gi|331082573|ref|ZP_08331698.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|260540577|gb|EEX21146.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Blautia
           hansenii DSM 20583]
 gi|330400551|gb|EGG80181.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 193

 Score = 41.1 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 52/176 (29%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +  ++  +  +D    + + ++SPGGS  AG  I+  +Q +K     I      +  A  
Sbjct: 44  IAAQLLFLESEDPGKDIHLYINSPGGSVTAGMVIYDTMQYIKCDVSTICMGLAASMGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L   A    +A   + +               +D +                        
Sbjct: 104 LAGGAKGKRMALPNAEIMIHQPSGGAQGQATEIDIVAQQ--------------------- 142

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227
                    +  + H    +++++     +            T  EA   GLID V
Sbjct: 143 ---------ILKTRHKLNSILAQNTGQTLETIARDTERDNYMTAQEAMAYGLIDSV 189


>gi|195384926|ref|XP_002051163.1| GJ13731 [Drosophila virilis]
 gi|194147620|gb|EDW63318.1| GJ13731 [Drosophila virilis]
          Length = 254

 Score = 41.1 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 60/190 (31%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D  S  ++ ++  +  ++    + + ++SPGG   AG AI+  +Q VK   
Sbjct: 55  IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L + A  +  +   + +                            
Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGG------------------AQ 156

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                      E+     Q+    V  + + +  + +            +      T  E
Sbjct: 157 GQATDILIHAEEIIKIKRQLTNIYVKHAKNNYDEMCAR-----------MERDHFMTPEE 205

Query: 218 AKKVGLIDVV 227
           AK +G+ID V
Sbjct: 206 AKTLGIIDHV 215


>gi|169334562|ref|ZP_02861755.1| hypothetical protein ANASTE_00965 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259279|gb|EDS73245.1| hypothetical protein ANASTE_00965 [Anaerofustis stercorihominis DSM
           17244]
          Length = 193

 Score = 41.1 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D     ++  +  +   +S   + + ++SPGGS  AG AI+  +  +K   
Sbjct: 29  IIFLSGEINDDVANLVVAEMLFLESQNSEKDIQLYINSPGGSVTAGMAIYDTMNYIKCDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L        +A  +S +     L  +                   
Sbjct: 89  STICIGMAASMGAFLLACGEKGKRIALPSSEIMIHQPLGGFQGQSS-------------- 134

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            V++    +  +     +++S+            +D   + +  
Sbjct: 135 ----------------DVEIHAKRLLKTREDINKILSKRTGKTLKTIEKDTDRDNFMSAK 178

Query: 217 EAKKVGLIDVV 227
           EA + GLID V
Sbjct: 179 EAMEYGLIDKV 189


>gi|126640549|ref|YP_001083533.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii ATCC 17978]
          Length = 155

 Score = 41.1 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 55/176 (31%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q +K            +  A  
Sbjct: 5   IVAQMLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASMGAFL 64

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A       E + V     L  +      ++     I  +                 
Sbjct: 65  LNAGAKGKRYCLENARVMIHQPLGGFRGQASDIEIHAREILFI----------------- 107

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227
                             RL++E     YD            T   AK+ GL+D V
Sbjct: 108 -------------KERLNRLMAEHSGQDYDTIARDTDRDNFMTAQAAKEYGLVDQV 150


>gi|321468091|gb|EFX79078.1| hypothetical protein DAPPUDRAFT_231060 [Daphnia pulex]
          Length = 235

 Score = 41.1 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D     ++ ++  +  + +   + + ++SPGGS  AG  I+  +Q V    
Sbjct: 53  IICVMGPITDDLSSLVVAQLLFLQSESNKKPVHMYINSPGGSVTAGLGIYDTMQYVLPPI 112

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    + ++  L S +  +  +   S +                            
Sbjct: 113 ATWCVGQACSMASLLLASGSPGMRYSLPNSRIMIHQPSGGVQGQ---------------- 156

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            +Q+  + +        +L  +   +        +   +  +  
Sbjct: 157 --------------ATDIQIQAEEIMKLKKQINQLYGKHTGLQLSVIESNMERDKFMSPV 202

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID +
Sbjct: 203 EAKEFGLIDKI 213


>gi|257458199|ref|ZP_05623353.1| Clp protease [Treponema vincentii ATCC 35580]
 gi|257444493|gb|EEV19582.1| Clp protease [Treponema vincentii ATCC 35580]
          Length = 202

 Score = 41.1 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 62/187 (33%), Gaps = 33/187 (17%)

Query: 41  IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
           I + G++    ++++I ++  +  D ++  + V + SPGG   AG AIF  I+ +K    
Sbjct: 33  IILSGEVNKELAEKVIRQLLILEADSASKPIYVYIDSPGGDVDAGFAIFDMIRFIKPPVY 92

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            +      +A A  L++   N  +    S       L     V   ++     I+ +   
Sbjct: 93  TVGMGLVASAGALILLAAPKNRRLGLPNSHYLIHQPLSGIKGVATDIEIHAKEIEKI--- 149

Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAE 217
                                            L++E            +D   W +  E
Sbjct: 150 ---------------------------RAKINALIAEETGKDVADVAKDTDRDYWLSADE 182

Query: 218 AKKVGLI 224
           A   GLI
Sbjct: 183 AVNYGLI 189


>gi|257428232|ref|ZP_05604630.1| protease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|258445568|ref|ZP_05693750.1| prophage protease [Staphylococcus aureus A6300]
 gi|258455562|ref|ZP_05703519.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|282905858|ref|ZP_06313713.1| phage protease [Staphylococcus aureus subsp. aureus Btn1260]
 gi|257275073|gb|EEV06560.1| protease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257855615|gb|EEV78548.1| prophage protease [Staphylococcus aureus A6300]
 gi|257862250|gb|EEV85021.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|282331150|gb|EFB60664.1| phage protease [Staphylococcus aureus subsp. aureus Btn1260]
          Length = 257

 Score = 41.1 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 70/221 (31%), Gaps = 38/221 (17%)

Query: 41  IAIRGQIEDSQELIERI------ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           I I G I   +     +       ++      + + V ++S GGS + G AI+  ++   
Sbjct: 20  IFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHP 79

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
            +      V  +AAS   +I+ + + I   + S +                         
Sbjct: 80  AKIN--IYVDALAASIASVIAMSGDTIFMHKNSFLMIHN--------------------- 116

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213
                             +  +    +  +        + +++++  ++   + D   W 
Sbjct: 117 --------SWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEQLKQMLDAETWL 168

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           T  EA   GLID + G  E+  S+      +     +D   
Sbjct: 169 TAEEALSFGLIDEILGANEIAASISKEQYKRFENVPEDLKK 209


>gi|332712287|ref|ZP_08432215.1| periplasmic serine protease, ClpP family [Lyngbya majuscula 3L]
 gi|332349093|gb|EGJ28705.1| periplasmic serine protease, ClpP family [Lyngbya majuscula 3L]
          Length = 294

 Score = 41.1 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 86/248 (34%), Gaps = 30/248 (12%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVY---------FSWSSHVEDNSPHVAR--------IAI 43
           M F        ++ L + +L  ++         F      E+N              I++
Sbjct: 1   MNFSFNFFDLFWIFLIISSLQPLWQRRQMQYRRFRALQEFEENRKSRLILLIHRQESISL 60

Query: 44  RGQ-------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
            G        IEDS++++  I     D     ++    +PGG   A E I RA+ +  ++
Sbjct: 61  FGIPVSRYISIEDSEQVLRAIRLTPPDVPIDLIL---HTPGGLVLATEQIARALIRHPSK 117

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI-KSV 155
             V   V   A S G +++ AS+ IV    +++G +            L  +     +++
Sbjct: 118 --VTVFVPHYAMSGGTMLALASDEIVMDANAVLGPVDPQLGNTAAASILRVVEQKPLEAI 175

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215
               +         +      +   ++D      +      R I +  T  ++     T 
Sbjct: 176 DDQTLMMADLASKAIKQVQRFVRTLLLDDIPKQKIDPEHIDRIIDFLTTGQITHDCPITV 235

Query: 216 AEAKKVGL 223
            EA ++GL
Sbjct: 236 EEASELGL 243


>gi|331090181|ref|ZP_08339069.1| hypothetical protein HMPREF1025_02652 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330402127|gb|EGG81699.1| hypothetical protein HMPREF1025_02652 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 229

 Score = 41.1 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 69/196 (35%), Gaps = 11/196 (5%)

Query: 41  IAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           + + G I +      ++  ++ +      +  + V ++SPGG   A   I+  +     +
Sbjct: 5   LFLNGTIAEESWFDDDITPQLFKEELMAGSGDITVWINSPGGDCVAAAQIYNMLMDY--K 62

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV----LFQYPYVKPFLDKLGVSI 152
             V  ++  +AASA  +I+ A   ++ +  S++         +     ++  ++ LG   
Sbjct: 63  GNVTVKIDGIAASAASVIAMAGTKVLVSPVSMMMIHNPMTVAMGDTAEMQKAIEMLGSVK 122

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
            S+ ++         + ++             +           R+   +     +   +
Sbjct: 123 DSIINAYEIKTGLSRTRLSHLMDAETWMDAGKAVELGFADEVLKRSEVPEDMETPAVSML 182

Query: 213 WTGAEAKKVGLIDVVG 228
           ++   A    L+D + 
Sbjct: 183 YS-KAAVVNSLMDKIA 197


>gi|296159099|ref|ZP_06841926.1| peptidase S14 ClpP [Burkholderia sp. Ch1-1]
 gi|295890660|gb|EFG70451.1| peptidase S14 ClpP [Burkholderia sp. Ch1-1]
          Length = 226

 Score = 41.1 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 59/193 (30%), Gaps = 44/193 (22%)

Query: 41  IAIRGQIED-----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95
           I +   I        Q++I+ ++         A+ + ++SPGG A+ G A+  AIQ+   
Sbjct: 27  IYLYDTIGGWYGIAVQDVIKELKDAKG-----AVNLRINSPGGDAFDGRALATAIQQH-- 79

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
                     + A    L + A+  +  A  S+  + G                 +  +V
Sbjct: 80  --------GNVTAHIDGLAASAATYVALAAKSVNIAEGAFMMVH-----------NAWTV 120

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-T 214
                       + +                       +       D+     D   W T
Sbjct: 121 AVGNAAELGDTIAMLQKID------------TSIANDYAAKTGKTLDEVKAWMDAETWFT 168

Query: 215 GAEAKKVGLIDVV 227
             EAK  GL+D +
Sbjct: 169 AQEAKDAGLVDNI 181


>gi|293606121|ref|ZP_06688486.1| enoyl-CoA hydratase/isomerase FadB1x [Achromobacter piechaudii ATCC
           43553]
 gi|292815576|gb|EFF74692.1| enoyl-CoA hydratase/isomerase FadB1x [Achromobacter piechaudii ATCC
           43553]
          Length = 260

 Score = 41.1 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/209 (10%), Positives = 54/209 (25%), Gaps = 28/209 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
             LI  +ER + D +  A++++   P    +      + +      +             
Sbjct: 31  DALIAALERANADANVRAVLLASDLP--GRFCAGLDMKKLLASSPTQVHALLSRLYVKLY 88

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
               +     I     ++ G    +     +             +    + A        
Sbjct: 89  DAQFNLTKPSISVVSGAVRGGGMTVAISSDMIVAASNATFGYPEIDVGVLPAIHYAHLP- 147

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                                +V + R         L  GR ++  EA  +GL+  V  +
Sbjct: 148 --------------------AIVGKHRAFDL-----LFTGRTFSAQEAHALGLVARVEDE 182

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
            ++ +    L    + +  +     +  +
Sbjct: 183 AQLLERARQLAQSLANKPPQVLAMGRRAF 211


>gi|87121308|ref|ZP_01077198.1| putative ATP-dependent Clp protease, proteolytic subunit
           [Marinomonas sp. MED121]
 gi|86163465|gb|EAQ64740.1| putative ATP-dependent Clp protease, proteolytic subunit
           [Marinomonas sp. MED121]
          Length = 210

 Score = 41.1 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 67/197 (34%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 44  VIFLVGQVEDHMANLVVAQLLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 103

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A+        S V     L  Y      ++     I S+K 
Sbjct: 104 STMCIGQAASMGALLLTAGAAGKRYCLPNSRVMIHQPLGGYQGQASDIEIHTREILSIKH 163

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                             ++S     P ++              
Sbjct: 164 ------------------------------RLNEIISFHTGKPIEEVAEDTDRDNFMDPT 193

Query: 217 EAKKVGLIDVVGGQEEV 233
            AK+ GLID +  + EV
Sbjct: 194 AAKEYGLIDDILLKREV 210


>gi|323351064|ref|ZP_08086721.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis VMC66]
 gi|322122788|gb|EFX94497.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis VMC66]
 gi|324993705|gb|EGC25624.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK405]
 gi|324994982|gb|EGC26895.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK678]
 gi|325687068|gb|EGD29091.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK72]
 gi|325696303|gb|EGD38194.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK160]
 gi|327462975|gb|EGF09296.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK1]
 gi|327470480|gb|EGF15936.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK330]
 gi|327474578|gb|EGF19983.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK408]
 gi|327490136|gb|EGF21924.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK1058]
 gi|328946905|gb|EGG41042.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK1087]
 gi|332359077|gb|EGJ36898.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK49]
 gi|332362296|gb|EGJ40096.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK1056]
 gi|332367219|gb|EGJ44954.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK1059]
          Length = 196

 Score = 41.1 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 61/192 (31%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D   V+   +  
Sbjct: 87  QTIVMGVAASMGTIIASSGAKGKRFMLPNAEYLIHQPMGGAGSGTQQTDMAIVAEHLL-- 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      + +   ++++E+     ++    ++   W +  
Sbjct: 145 --------------------------RTRNTLEKILAENSGKSVEQIHKDAERDYWMSAQ 178

Query: 217 EAKKVGLIDVVG 228
           E  + G ID + 
Sbjct: 179 ETLEYGFIDEIM 190


>gi|288931153|ref|YP_003435213.1| hypothetical protein Ferp_0768 [Ferroglobus placidus DSM 10642]
 gi|288893401|gb|ADC64938.1| protein of unknown function DUF107 [Ferroglobus placidus DSM 10642]
          Length = 424

 Score = 41.1 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 72/199 (36%), Gaps = 37/199 (18%)

Query: 37  HVARIAIRGQIEDSQEL-IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95
            V  + I G I +   + IER  +I+ +++A A++++L +PGG   + E I   I   K 
Sbjct: 20  KVVEVRIEGAINEGTVIKIERAFKIAEEENADAILITLDTPGGLVKSTEKIVSMILSSKI 79

Query: 96  RKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
                       +ASAG +I  A ++   +E + VG+   +          +K       
Sbjct: 80  PVVTYVYPQGAFSASAGSIILIAGHVAAMSEGTSVGAATPIAVGVEGTKVEEKAVK---- 135

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIW 213
                                             +V+ ++E R          +++    
Sbjct: 136 ------------------------------YLASYVKSIAEKRGRNATAIEKFVTEAYSL 165

Query: 214 TGAEAKKVGLIDVVGGQEE 232
           +  EA K  +IDV+   +E
Sbjct: 166 SAKEALKYNVIDVIANSKE 184


>gi|158317030|ref|YP_001509538.1| endopeptidase Clp [Frankia sp. EAN1pec]
 gi|158112435|gb|ABW14632.1| Endopeptidase Clp [Frankia sp. EAN1pec]
          Length = 213

 Score = 41.1 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 61/186 (32%), Gaps = 33/186 (17%)

Query: 43  IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102
           +   I ++  +  ++  ++ +D    + + ++SPGGS  AG AI+  +Q V+N    ++ 
Sbjct: 46  VEDSIANA--ICAQLLLLNAEDPERDIFLYINSPGGSVSAGMAIYDTMQYVENDVATVSL 103

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
               +     L + A     +   + +                                 
Sbjct: 104 GLAASMGQFLLCAGAPGKRYSLPHARIMMHQPSGGIGG---------------------- 141

Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKV 221
                       + +  + +  +       ++     P ++    SD  R +T  EAK  
Sbjct: 142 --------TASDIAIQAEQMLYTKRMMQERIAFHTGQPVEQIERDSDRDRWFTADEAKDY 193

Query: 222 GLIDVV 227
           G +D V
Sbjct: 194 GFVDHV 199


>gi|325264756|ref|ZP_08131485.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           sp. D5]
 gi|324030048|gb|EGB91334.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           sp. D5]
          Length = 193

 Score = 41.1 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 52/181 (28%), Gaps = 31/181 (17%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  ++ ++  +  DD    + + ++SPGGS  +G AI+  +Q +K     +      +
Sbjct: 39  VSASVIVAQLLFLEADDPDKDIQLYINSPGGSVTSGLAIYDTMQYIKCDVSTVCIGMAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L         A   + +                      I  V    +K      
Sbjct: 99  MGAFLLSGGKKGKRFALPNAEIMIHQ-------PSGGAQGQATEIHIVAEHILKIRHKLN 151

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226
             +                       +E+     D            +  EAK+ GLID 
Sbjct: 152 QIL-----------------------AENTGQSLDVIKVDTERDNYMSALEAKEYGLIDE 188

Query: 227 V 227
           V
Sbjct: 189 V 189


>gi|307293097|ref|ZP_07572943.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sphingobium
           chlorophenolicum L-1]
 gi|306881163|gb|EFN12379.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sphingobium
           chlorophenolicum L-1]
          Length = 211

 Score = 41.1 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 59/203 (29%), Gaps = 33/203 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   +G AI   ++ ++ + 
Sbjct: 38  IIFVTGQVEDHMASLIVAQLLFLESENPKKDIWMYINSPGGVVTSGMAIHDTMKYIRPQV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +                        + + +GS  +    P  +  L    + +     
Sbjct: 98  GTVC---------------------IGQAASMGSFLLAAGEPGKRIALSNARIMVHQPSG 136

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                      +                      L  +      ++    +         
Sbjct: 137 GAQGMASDIEIQAKEILR---------IRSRLNNLYVQYTGRTLEEVERAMDRDTFLEAE 187

Query: 217 EAKKVGLIDVVGGQEEVWQSLYA 239
           EAK  GL+D V  +         
Sbjct: 188 EAKAFGLVDEVFDRRPAAAETAE 210


>gi|166369013|ref|YP_001661286.1| ATP-dependent Clp protease proteolytic subunit 2 [Microcystis
           aeruginosa NIES-843]
 gi|166091386|dbj|BAG06094.1| ATP-dependent Clp protease proteolytic subunit 2 [Microcystis
           aeruginosa NIES-843]
          Length = 233

 Score = 41.1 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 63/184 (34%), Gaps = 29/184 (15%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  ++ ++  +  +D    + + ++SPGGS YAG AI+  +Q+++     I      +  
Sbjct: 69  ADSIVAQLLYLEAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVATICFGLAASMG 128

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L   A+   ++  +S +     L         +      I  +              
Sbjct: 129 AFLLCGGAAGKRMSLPSSRIMIHQPLGGAQGQASDIAIQAKEILYI-------------- 174

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
                 Q +  ++          ++                   +  EAK+ GLID+V  
Sbjct: 175 -----KQRLNTMLAHHTGQPYDRIA----------NDTERDFFMSAVEAKEYGLIDLVIS 219

Query: 230 QEEV 233
           + E+
Sbjct: 220 RPEL 223


>gi|160893842|ref|ZP_02074625.1| hypothetical protein CLOL250_01396 [Clostridium sp. L2-50]
 gi|156864494|gb|EDO57925.1| hypothetical protein CLOL250_01396 [Clostridium sp. L2-50]
          Length = 193

 Score = 41.1 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 58/181 (32%), Gaps = 31/181 (17%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  +I ++  +  +D +  + + ++SPGGS  AG  I+  +Q +K     I      +
Sbjct: 39  TSASIVIAQLLFLESEDPSKDISLYINSPGGSVTAGLGIYDTMQYIKCDVSTICCGMAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L   A     A   + +               ++                     
Sbjct: 99  MGAFLLAGGAKGKRFALPNAEIMIHQPSGGSQGQATEIEIAAK----------------- 141

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDV 226
                         +  +     R++SE+   PY+     ++   W +  EA   GLID 
Sbjct: 142 -------------HILKTKEKLNRMLSENTGKPYETIAADTERDNWMSAEEACAYGLIDS 188

Query: 227 V 227
           V
Sbjct: 189 V 189


>gi|126741244|ref|ZP_01756923.1| Protease subunit of ATP-dependent Clp protease [Roseobacter sp.
           SK209-2-6]
 gi|126717649|gb|EBA14372.1| Protease subunit of ATP-dependent Clp protease [Roseobacter sp.
           SK209-2-6]
          Length = 210

 Score = 41.1 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++ +  + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 38  IIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +  + +  +   S V        +                   
Sbjct: 98  STLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMVHQPSGGFQGQ---------------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +  +           +  +      DK    L      +  
Sbjct: 142 --------------ATDIMIHAEETLKLKRRLNEIYVKHTGQELDKVEAALERDNFMSPE 187

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID +
Sbjct: 188 EAKEFGLIDEI 198


>gi|57242492|ref|ZP_00370430.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           upsaliensis RM3195]
 gi|57016777|gb|EAL53560.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           upsaliensis RM3195]
          Length = 194

 Score = 41.1 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I D     ++ ++  +  +D    + + ++SPGG   +G +I+  +  +K   
Sbjct: 28  IVMLSGEINDDVASSIVAQLLFLEAEDPQKDIYLYINSPGGVITSGFSIYDTMNYIKPDV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             I      +  A  L   A     A   S +     L 
Sbjct: 88  CTICIGQAASMGAFLLSCGAKQKRFALPNSRIMIHQPLG 126


>gi|148241694|ref|YP_001226851.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RCC307]
 gi|147850004|emb|CAK27498.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           RCC307]
          Length = 200

 Score = 41.1 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 32/191 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++ D  +  L+ ++  +  DDS+  + + ++SPGGS  AG AI+  IQ +K+  
Sbjct: 32  ILFLGGEVNDGVANALVAQMLYLDSDDSSKPIYLYINSPGGSVTAGLAIYDTIQYIKSDV 91

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +      VA   S +     L      +    ++         
Sbjct: 92  VTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTAQRQASDIEIEAR------ 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +        + +++      +K    +D   + +  
Sbjct: 146 -----------------------EILRMKDQLNKQLADMSGQTIEKITKDTDRDYFLSAD 182

Query: 217 EAKKVGLIDVV 227
           +AK  GLID V
Sbjct: 183 DAKAYGLIDRV 193


>gi|118444381|ref|YP_878863.1| ATP-dependent Clp protease proteolytic subunit [Clostridium novyi
           NT]
 gi|166201817|sp|A0Q2L1|CLPP_CLONN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|118134837|gb|ABK61881.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           novyi NT]
          Length = 195

 Score = 41.1 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 56/180 (31%), Gaps = 31/180 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K     I      +  A  
Sbjct: 44  VVAQLLFLEAEDPDKDIYLYINSPGGSITAGMAIYDTMQYIKPDVSTICIGMAASMGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     A   S +     L  +                                  
Sbjct: 104 LTAGAKGKRFALPNSEIMIHQPLGGFQGQ------------------------------A 133

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQE 231
             + +  + +         ++SE    P +     +         EAK+ GLID V    
Sbjct: 134 TDIGIHANRILKIKDKLNSILSERTGQPLEVIKKDVERDNFMEAEEAKEYGLIDDVITSR 193


>gi|91224747|ref|ZP_01260007.1| hypothetical protein V12G01_01100 [Vibrio alginolyticus 12G01]
 gi|91190293|gb|EAS76562.1| hypothetical protein V12G01_01100 [Vibrio alginolyticus 12G01]
          Length = 458

 Score = 41.1 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 85/272 (31%), Gaps = 22/272 (8%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISR 62
           +K++   ++ L L+    +              V  + ++G I    S  L   IE    
Sbjct: 1   MKRLWIWFLPLLLIASQALA-----------NTVWIVPVKGAIGPATSDYLSREIEEAQL 49

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAI-QKVKNRKPVITEVHEMAASAGYLISCASNII 121
           +   + +I+ + +PGG   A   I  AI          +      AASAG  I  AS++ 
Sbjct: 50  N-GVSLVILEMDTPGGLDSAMRDIIHAITTSSTPIATWVGPSGSRAASAGTYILLASHVA 108

Query: 122 VAAETSLVGSIGVL--FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179
             AE + +G+   +     P      D    + +       ++     ++   +   +  
Sbjct: 109 AMAEATNLGAATPVALGGAPQPPSSDDGKDQNAEETPEGTNESSEKVPAKTAMEKKVIND 168

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
                     +      RN  + +   +S+       EA ++ +ID +    E       
Sbjct: 169 AKAYIKGLAKLH----GRNAEWAE-KAVSEAASLDATEALELNVIDYIANSPEDLVKAID 223

Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
               +   +    +     W     +     L
Sbjct: 224 GQTVKVNNRTVTLSLENPTWVERTPDWRAEML 255


>gi|17488507|ref|NP_510985.1| Clp protease [Listeria phage 2389]
 gi|254933557|ref|ZP_05266916.1| clp protease [Listeria monocytogenes HPB2262]
 gi|17402412|emb|CAC85560.1| Clp protease [Listeria phage PSA]
 gi|293585121|gb|EFF97153.1| clp protease [Listeria monocytogenes HPB2262]
 gi|332311661|gb|EGJ24756.1| Clp protease [Listeria monocytogenes str. Scott A]
          Length = 248

 Score = 41.1 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/205 (11%), Positives = 65/205 (31%), Gaps = 34/205 (16%)

Query: 30  HVEDNSPHVARIAIRGQIEDS--QELIER-IERISRDDSATALIVSLSSPGGSAYAGEAI 86
                +P +A + + G I      ++    ++   +  S + + V ++S GG  +   AI
Sbjct: 16  KNSSENPEIADLYLYGSIGSGWFDDITSSEVQNFLKTSSVSQINVHVNSGGGDVFESIAI 75

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
              ++    +      +  +A S   +I+ A + I+    +++                 
Sbjct: 76  HNLLKAHPAKIS--IYIDALAGSGASVIAMAGDEIIMPSNAMMMIH-------------- 119

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
                  ++ +          ++++     + +   +                  +   +
Sbjct: 120 ----KAWTIAAGNADEFRKVANDMDKIDHAVTESYTERFV-----------GEREELVTL 164

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQE 231
           L++    T  E   +G  D +G  E
Sbjct: 165 LTNEEWLTAEECVTLGFCDSIGEIE 189


>gi|324991352|gb|EGC23285.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK353]
 gi|325690651|gb|EGD32652.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK115]
 gi|325694980|gb|EGD36884.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK150]
          Length = 196

 Score = 41.1 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 61/192 (31%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D   V+   +  
Sbjct: 87  QTIVMGVAASMGTIIASSGAKGKRFMLPNAEYLIHQPMGGAGSGTQQTDMAIVAEHLL-- 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      + +   ++++E+     ++    ++   W +  
Sbjct: 145 --------------------------RTRNTLEKILAENSGKSVEQIHKDAERDYWMSAQ 178

Query: 217 EAKKVGLIDVVG 228
           E  + G ID + 
Sbjct: 179 ETLEYGFIDEIM 190


>gi|299532201|ref|ZP_07045595.1| enoyl-CoA hydratase [Comamonas testosteroni S44]
 gi|298719863|gb|EFI60826.1| enoyl-CoA hydratase [Comamonas testosteroni S44]
          Length = 304

 Score = 41.1 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/275 (9%), Positives = 76/275 (27%), Gaps = 32/275 (11%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQ-----IEDS--QELIERIERISRDDSATALIVSLSS-- 75
            + S   + ++P +AR+ +        I +   +E+   +E    +     ++V  +   
Sbjct: 5   STLSITPDPSNPRIARLLLNRPERLNAIGNQTPREIRRAVEWAQDNPDVHVIVVEGAGKG 64

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
             G     E   + I+    ++    +  E  A          ++   ++ ++    G  
Sbjct: 65  FCGGYDLAETAEQEIEHPCQQERTPWDPMEDYAFMKRNTEDFMSLWRCSKPTIAKVHG-- 122

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                       +           +    +                          + ++
Sbjct: 123 ----------AAVAGGSDIALCCDLLIMANDARIGYMPTRVWGCPTTAMWTQRLGPMRAK 172

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
                     ++  G + +GA+A + GL +      E+  +   L    +          
Sbjct: 173 ---------QMMFTGDVISGAQAAEWGLANEAVDASELEAATMKLANRIASVPRGHLAMH 223

Query: 256 KNYWFCDLKNLSIS--SLLEDTIPLMKQTKVQGLW 288
           K      +  + +    +L      + +   +G+W
Sbjct: 224 KLVVNQTMLTMGLEQGQMLATVFDGITRHNPEGMW 258


>gi|330503117|ref|YP_004379986.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           mendocina NK-01]
 gi|328917403|gb|AEB58234.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           mendocina NK-01]
          Length = 213

 Score = 41.1 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 57/191 (29%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED     +  ++  +  ++    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 45  VIFMVGQVEDYMANLICAQLLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKADV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L   A         S V     L  +      ++     I  +  
Sbjct: 105 STTCIGQACSMGAFLLAGGAKGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFI-- 162

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L++       +      +     + +
Sbjct: 163 ----------------------------RERLNELLAHHTGQSLETIERDTNRDNFMSAS 194

Query: 217 EAKKVGLIDVV 227
            A + GL+D V
Sbjct: 195 RAVEYGLVDAV 205


>gi|227539189|ref|ZP_03969238.1| enoyl-CoA hydratase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240871|gb|EEI90886.1| enoyl-CoA hydratase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 255

 Score = 41.1 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 63/243 (25%), Gaps = 36/243 (14%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
            EL + I     D +   +I+         +        + +    +  I     M    
Sbjct: 31  DELTQAILEAEEDPAIEGIILHGKEN---FFTSGLDLITLYQYNEEQMKIFWSRFMTLIH 87

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
                   ++   +  S  G          +    D   ++         +         
Sbjct: 88  TLTAFSKPSVAAISGHSPAGGC-------VLGICCDYRIMARGEFIIGLNEVPVGIVVPP 140

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
           +   +         +Y +                  L +G++    +A +VGLID V   
Sbjct: 141 SIFKLYSFWIGQRLAYQY------------------LLEGKLLNPEKALEVGLIDEVVDP 182

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
           + +  +         +RKIK     +   +   K      LLE      +    Q L   
Sbjct: 183 DRIRTAA--------LRKIKSVTQFEKNSWRSTKQNLRKELLESITQQQEAAIDQVLKQW 234

Query: 291 WNP 293
           W P
Sbjct: 235 WAP 237


>gi|302391398|ref|YP_003827218.1| hypothetical protein Acear_0611 [Acetohalobium arabaticum DSM 5501]
 gi|302203475|gb|ADL12153.1| protein of unknown function DUF107 [Acetohalobium arabaticum DSM
           5501]
          Length = 436

 Score = 41.1 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-EDSQELIERIERISRDDS 65
           ++  R++ L L+ +  +  S+S+  E  +  +  I + G+I       +ER    + +  
Sbjct: 6   RLNQRWMALILILVIGLLLSFSAVGEAEAKTIYEIPVEGEINLGLARFVERGIAQAENSQ 65

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
           A A+++++ + GG   A   I   I  +    PV+  V   A SAG LI+ AS+ I    
Sbjct: 66  AEAILLTVDTFGGLVKAATMIRDDI--LGTELPVVAYVKNRAWSAGALITIASSDIFMDS 123

Query: 126 TS 127
            S
Sbjct: 124 GS 125


>gi|328676003|gb|AEB28678.1| ATP-dependent Clp protease proteolytic subunit [Francisella cf.
           novicida 3523]
          Length = 201

 Score = 41.1 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 57/198 (28%), Gaps = 33/198 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++ D     +I ++  +  +D    +   ++SPGG   AG  ++  +Q +K   
Sbjct: 32  IVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTMQFIKPDV 91

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L   A     +  +S +     L  +      ++    +I  +K 
Sbjct: 92  STICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKD 151

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216
              K                                +       D               
Sbjct: 152 RLNKVL------------------------------AHHTGQDLDTIIKDTDRDNFMMAD 181

Query: 217 EAKKVGLIDVVGGQEEVW 234
           EAK  GLID V    E  
Sbjct: 182 EAKAYGLIDHVIESREAI 199


>gi|224532269|ref|ZP_03672901.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           valaisiana VS116]
 gi|224511734|gb|EEF82140.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           valaisiana VS116]
          Length = 197

 Score = 41.1 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  +I ++  +  +DS+  + + L+SPGGS  AG AI+  +Q +K   
Sbjct: 33  IIFLSGEINDPKADTVIAQLLFLESEDSSKDIYLYLNSPGGSITAGLAIYDTMQYIKPDV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             I      +  A  L S A     +   S +       
Sbjct: 93  RTICIGQAASMGAFLLASGAKGKRESLTYSRIMIHQPWG 131


>gi|196230686|ref|ZP_03129547.1| Endopeptidase Clp [Chthoniobacter flavus Ellin428]
 gi|196225027|gb|EDY19536.1| Endopeptidase Clp [Chthoniobacter flavus Ellin428]
          Length = 228

 Score = 41.1 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  +I ++  +  +D    + + ++SPGGS  AG AI+  +Q +    
Sbjct: 43  IIFLGTAIDDGVANSIIAQLLFLQMEDGKKDINIYINSPGGSVTAGLAIYDTMQFLTCDV 102

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L +       A   S +    V                       
Sbjct: 103 NTYCIGMAASMGAVLLAAGTKGKRYALPNSDIMIHQVSGGAQG----------------- 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            V+   + +       + ++++      ++    SD   + +  
Sbjct: 146 -------------TASDVERTVEFMFKLKKRLIHILAKHTGKTDEQVKTDSDRDYYMSAD 192

Query: 217 EAKKVGLIDVV 227
           EAK  GL+D V
Sbjct: 193 EAKAYGLVDEV 203


>gi|49078976|gb|AAT49840.1| PA1801 [synthetic construct]
          Length = 214

 Score = 41.1 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 55/175 (31%), Gaps = 31/175 (17%)

Query: 60  ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119
           +  ++    + + ++SPGGS  AG +I+  +Q +K            +  A  L   A+ 
Sbjct: 67  LEAENPEKDIHLYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAG 126

Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179
                  S +     L  +      ++     I  +K                       
Sbjct: 127 KRYCLPHSRMMIHQPLGGFQGQASDIEIHAKEILFIK----------------------- 163

Query: 180 DVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233
                      ++++     P D         R  +G EA K GLID V  Q ++
Sbjct: 164 -------ERLNQILAHHTGQPLDVIARDTDRDRFMSGDEAVKYGLIDKVMTQRDL 211


>gi|225551910|ref|ZP_03772850.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia sp.
           SV1]
 gi|225370908|gb|EEH00338.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia sp.
           SV1]
          Length = 194

 Score = 41.1 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  +I ++  +  +DS   + + L+SPGGS  AG AI+  +Q +K   
Sbjct: 30  IIFLSGEINDPKADTVIAQLLFLESEDSNKDIYLYLNSPGGSITAGLAIYDTMQYIKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             I      +  A  L   A     +   S +       
Sbjct: 90  RTICIGQAASMGAFLLAGGAKGKRESLTYSRIMIHQPWG 128


>gi|150396095|ref|YP_001326562.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           medicae WSM419]
 gi|150027610|gb|ABR59727.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium
           medicae WSM419]
          Length = 208

 Score = 41.1 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 59/199 (29%), Gaps = 33/199 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +  ++  +  ++    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 37  IIFLTGPVEDHMATLVCAQLLFLEAENPKKEIALYINSPGGVVTAGMAIYDTMQFIKPAV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +   ++  A   S +                            
Sbjct: 97  STLCIGQAASMGSLLLAAGHKDMRFATPNSRIMVHQPSG--------------------- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                      + +          +         +  +     Y++    L      +  
Sbjct: 136 -------GFQGQASDIERHA--RDILKMKRRLNEVYVKHCGRTYEEVEQTLDRDHFMSSD 186

Query: 217 EAKKVGLIDVVGGQEEVWQ 235
           EA   GLID V    +  +
Sbjct: 187 EALDWGLIDKVITSRDAVE 205


>gi|262277075|ref|ZP_06054868.1| ATP-dependent Clp protease, proteolytic subunit ClpP [alpha
           proteobacterium HIMB114]
 gi|262224178|gb|EEY74637.1| ATP-dependent Clp protease, proteolytic subunit ClpP [alpha
           proteobacterium HIMB114]
          Length = 204

 Score = 41.1 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 60/196 (30%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I    S  +  ++  +  ++++  + + ++SPGG    G AI+  +Q +K   
Sbjct: 38  IIFLTGPINSYISSLVSAQLLFLESENNSKEIYLYINSPGGVVTDGLAIYDTMQFIKPTV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      AAS G  +  A    +      +                      I+    
Sbjct: 98  STLCIGQ--AASMGSFLLAAGEKGLR-----MSLPNARIMVHQPSAGFQGQATDIEI--- 147

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                                   + S+      + S+      +     L      +  
Sbjct: 148 --------------------HTKEILSTKKRLNEIYSKHTGQTVETIKEALERDNFMSAE 187

Query: 217 EAKKVGLIDVVGGQEE 232
           EAKK GL+D V  + +
Sbjct: 188 EAKKFGLVDKVVEKRD 203


>gi|325293013|ref|YP_004278877.1| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium sp.
           H13-3]
 gi|325060866|gb|ADY64557.1| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium sp.
           H13-3]
          Length = 203

 Score = 41.1 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 68/201 (33%), Gaps = 33/201 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D+    +  ++  +  ++    + + ++SPGG   +G A++  ++ ++   
Sbjct: 33  IIFLNGEVNDAVSALVCAQLLFLEAENPKKPIHLYINSPGGVVTSGLAMYDTMRYIRAPV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                         + +   +   + +   + G  G     P     + +     +    
Sbjct: 93  --------------HTLCMGTARSMGSFLLMAGEPGARAALPNASILIHQPSGGFQG--- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +  + +  + H   RL +E     YD+    +   R  T  
Sbjct: 136 -------------QASDMLIHAEEIRQTKHRMTRLYAEHCKRSYDEFEAAMDRDRFMTVE 182

Query: 217 EAKKVGLIDVVGGQEEVWQSL 237
           EA + GLID V    E   + 
Sbjct: 183 EALEWGLIDRVLDVREDVAAA 203


>gi|322835204|ref|YP_004215230.1| peptidase S14 ClpP [Rahnella sp. Y9602]
 gi|321170405|gb|ADW76103.1| peptidase S14 ClpP [Rahnella sp. Y9602]
          Length = 676

 Score = 41.1 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/211 (10%), Positives = 55/211 (26%), Gaps = 40/211 (18%)

Query: 32  EDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           + +    A I I  +I      +++    ++ +   D      + + SPGG  + G AI+
Sbjct: 26  KASGDKTADIYIYDEIGYWGVTARQFTSSMKALGDLDHIN---LHIHSPGGDVFDGIAIY 82

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             +      K V  +                        S+   I ++     +      
Sbjct: 83  NLLNSHTASKTVYID--------------------GLAASMASVIAMVGNPIIMPENAMM 122

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
           +      +              ++                  +   ++      D+  ++
Sbjct: 123 MIHKPWGITGGDANDMRDYADLLDKVE------------AVLIPSYAKKTGKTPDELALM 170

Query: 208 SDGRIW-TGAEAKKVGLIDVVGGQEEVWQSL 237
                W T  E  + G  D +    +    +
Sbjct: 171 LGEETWMTAQECLEHGFADQISTAVQAMARI 201


>gi|139437042|ref|ZP_01771202.1| Hypothetical protein COLAER_00176 [Collinsella aerofaciens ATCC
           25986]
 gi|133776689|gb|EBA40509.1| Hypothetical protein COLAER_00176 [Collinsella aerofaciens ATCC
           25986]
          Length = 210

 Score = 41.1 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 31/185 (16%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +   D+   + + ++SPGG  Y+G AI   +  +K +   I      + +A  
Sbjct: 54  VVAQLLHLESQDAEKDISLYINSPGGEVYSGLAILDTMNFIKPQVSTICVGMAASMAAVL 113

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A         S V                      I+ V     K        ++ 
Sbjct: 114 LSAGAKGKRFCLPHSKVMIHQ-------PSGGAQGQQTEIEIVAEEIKKTRRELNQILSD 166

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231
            +                         P +K           T  EA   GLID +    
Sbjct: 167 AS-----------------------GQPIEKVQADTERDNYLTAVEALDYGLIDRIVTSR 203

Query: 232 EVWQS 236
           ++   
Sbjct: 204 DLAAK 208


>gi|304311290|ref|YP_003810888.1| ATP-dependent Clp protease proteolytic subunit [gamma
           proteobacterium HdN1]
 gi|301797023|emb|CBL45236.1| ATP-dependent Clp protease proteolytic subunit [gamma
           proteobacterium HdN1]
          Length = 189

 Score = 41.1 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K     I      +  A  
Sbjct: 39  IVAQLLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKADVSTICVGQACSMGAFL 98

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     A   S V     L  +      ++     I +                  
Sbjct: 99  LAAGAPGKRYALPNSRVMIHQPLGGFQGQASDIEIHAREIIT------------------ 140

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227
                              ++++    P +K           +  +AK+ GL+D V
Sbjct: 141 ------------MKRRLNEMLAKHSGQPIEKVEGDTDRDNFMSAFDAKEYGLVDQV 184


>gi|187920338|ref|YP_001889369.1| hypothetical protein Bphyt_5652 [Burkholderia phytofirmans PsJN]
 gi|187718776|gb|ACD19999.1| protein of unknown function DUF107 [Burkholderia phytofirmans
          PsJN]
          Length = 522

 Score = 41.1 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 6  KKIKTRYVMLSLVTLTVVY--FSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERIS 61
          + ++   V+  L+         + +         V  I + G I    +  ++  ++R +
Sbjct: 11 RLMRGMTVLGMLLAFGFASCESNVALRAAVAPNSVVVIPVNGAISPASADFIVRSLQRAA 70

Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAI 90
           D  A   ++ L +PGG   +   I +AI
Sbjct: 71 ED-RAQLAVLQLDTPGGLDTSMRQIIKAI 98


>gi|19705312|ref|NP_602807.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|237742958|ref|ZP_04573439.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           4_1_13]
 gi|254302272|ref|ZP_04969630.1| S14 family endopeptidase ClpP [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|256028615|ref|ZP_05442449.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           D11]
 gi|289766533|ref|ZP_06525911.1| endopeptidase Clp [Fusobacterium sp. D11]
 gi|296328560|ref|ZP_06871079.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|22653693|sp|Q8RHJ8|CLPP_FUSNN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|19713281|gb|AAL94106.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|148322464|gb|EDK87714.1| S14 family endopeptidase ClpP [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|229430606|gb|EEO40818.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           4_1_13]
 gi|289718088|gb|EFD82100.1| endopeptidase Clp [Fusobacterium sp. D11]
 gi|296154369|gb|EFG95168.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 193

 Score = 41.1 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 55/179 (30%), Gaps = 29/179 (16%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  +I ++  +  +D    +I+ ++SPGGS   G AI+  +  +K     +      +  
Sbjct: 40  ANSIIAQLLYLEAEDPEKDIIMYINSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMG 99

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L + A     A E S +     L          D                       
Sbjct: 100 AFLLAAGAKGKRFALENSRIMIHQPLISGGLKGQATDI---------------------- 137

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227
                  +  + +         L++++     ++           +  EA   GLID V
Sbjct: 138 ------SIHANELLKIKDRLAELLAKNTGKTKEQILRDTERDNYLSSEEAVNYGLIDSV 190


>gi|332298209|ref|YP_004440131.1| ATP-dependent Clp protease proteolytic subunit [Treponema
           brennaborense DSM 12168]
 gi|332181312|gb|AEE17000.1| ATP-dependent Clp protease proteolytic subunit [Treponema
           brennaborense DSM 12168]
          Length = 204

 Score = 41.1 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G+I D  +  ++ +I  +   +S   + + ++SPGGS  AG AI+  IQ VK   
Sbjct: 34  IVFIDGEITDMTADLIVAQILFLDSQNSEKDISLYINSPGGSVTAGLAIYDTIQSVKCDT 93

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             I      + +A  L    +    A  +S V       
Sbjct: 94  QTICVGQAASMAAILLAGGTAGKRYALPSSRVMIHQPWG 132


>gi|322704346|gb|EFY95942.1| enoyl-CoA hydratase/isomerase family protein [Metarhizium
           anisopliae ARSEF 23]
          Length = 283

 Score = 41.1 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 1/79 (1%)

Query: 209 DGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267
           +GR +TG +A + GL D      ++  + +    + +  +               LK L 
Sbjct: 184 EGRRFTGQQAVEYGLADATAASLDDALRFIAERQLTEKAKAGVYGVIKTELHKDLLKELR 243

Query: 268 ISSLLEDTIPLMKQTKVQG 286
              +  +     +  ++ G
Sbjct: 244 KEGVDREEARFNEDQRLDG 262


>gi|255284021|ref|ZP_05348576.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bryantella
           formatexigens DSM 14469]
 gi|255265474|gb|EET58679.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bryantella
           formatexigens DSM 14469]
          Length = 194

 Score = 41.1 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 52/176 (29%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D A  + + ++SPGGS  AG AI+  +Q +K     I      +  A  
Sbjct: 44  IVAQLLFLESEDPAKDIQLYINSPGGSVSAGWAIYDTMQYIKCDVSTICMGMAASMGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L   A     A   + +               +  +                        
Sbjct: 104 LAGGAKGKRFALPNAQIMIHQPSGGAKGQASDIKIVAEE--------------------- 142

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227
                    +  S       ++ +   P D            T  EAK  GLID V
Sbjct: 143 ---------ILKSRKRLNEYLAANTGQPIDVIEADTERDNYMTAEEAKAYGLIDAV 189


>gi|323705911|ref|ZP_08117482.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534709|gb|EGB24489.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 194

 Score = 40.8 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + +  +I D     ++ ++  +  +D    + + ++SPGGS  +  AI+  +Q +K   
Sbjct: 29  IVFLGEEINDVSASLVVAQLLFLEGEDPDKDIWLYINSPGGSITSAFAIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +A A  L + A     +   S +     L      +     + +  + +  
Sbjct: 89  VTMCVGMAASAGAFLLAAGAKGKRFSLPNSEIMIHQPLG---GTQGQATDIKIHAERIIK 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
              K                                SE    P +K    ++   +    
Sbjct: 146 MKQKLNKIL---------------------------SERTGQPLEKIERDTERDFFMDPE 178

Query: 217 EAKKVGLIDVV 227
           EAK  GLID +
Sbjct: 179 EAKAYGLIDEI 189


>gi|303244706|ref|ZP_07331037.1| protein of unknown function DUF114 [Methanothermococcus okinawensis
           IH1]
 gi|302484920|gb|EFL47853.1| protein of unknown function DUF114 [Methanothermococcus okinawensis
           IH1]
          Length = 279

 Score = 40.8 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 5/106 (4%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+E++  I     D     ++    +PGG   A E I  A+++ K +  VI   + M
Sbjct: 67  IEDSEEVLRAIRMTPEDMPIDLIL---HTPGGLVLASEQIAMALKEHKAKTTVIIPHYAM 123

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           +   G LIS A + I+  + +++G +            ++ +    
Sbjct: 124 SG--GSLISLAVDEIIMDKNAVMGPVDPQIGQYPAASIINTVNSKY 167


>gi|28900960|ref|NP_800615.1| hypothetical protein VPA1105 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260366172|ref|ZP_05778632.1| serine protease [Vibrio parahaemolyticus K5030]
 gi|260879814|ref|ZP_05892169.1| serine protease [Vibrio parahaemolyticus AN-5034]
 gi|260894488|ref|ZP_05902984.1| serine protease [Vibrio parahaemolyticus Peru-466]
 gi|28809406|dbj|BAC62448.1| putative membrane protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086486|gb|EFO36181.1| serine protease [Vibrio parahaemolyticus Peru-466]
 gi|308091942|gb|EFO41637.1| serine protease [Vibrio parahaemolyticus AN-5034]
 gi|308114744|gb|EFO52284.1| serine protease [Vibrio parahaemolyticus K5030]
          Length = 459

 Score = 40.8 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 7/218 (3%)

Query: 36  PHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ-K 92
             V  + ++G I   +S  L   IE+   +   + +I+ + +PGG   A   I  AI   
Sbjct: 21  NTVWIVPVKGAIGPANSDYLTREIEQAQIN-GVSLVILKMDTPGGLDSAMRDIIHAITTS 79

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
                  +      AASAG  I  AS++   AE + +G+   +      +      G   
Sbjct: 80  TTPIATWVGPSGSRAASAGTYILLASHVAAMAEATNLGAATPVAIGGAPQAPSSDDGKDK 139

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
           ++  S   K       +  P    M + V++ +  +   L              +S+   
Sbjct: 140 EA--SDENKPNAEKSGDQVPAKTAMEKKVINDAKAYIKGLAKLHDRNAQWAEKAVSEAAS 197

Query: 213 WTGAEAKKVGLIDVVGGQ-EEVWQSLYALGVDQSIRKI 249
               EA ++ +IDV+    EE+  ++    V  +   +
Sbjct: 198 LDAEEALELNVIDVIANSPEELVTAINGKSVKVNNLPV 235


>gi|34762747|ref|ZP_00143736.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|256846930|ref|ZP_05552384.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 3_1_36A2]
 gi|294784271|ref|ZP_06749566.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 3_1_27]
 gi|27887597|gb|EAA24677.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|256717728|gb|EEU31287.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 3_1_36A2]
 gi|294488137|gb|EFG35488.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 3_1_27]
          Length = 193

 Score = 40.8 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 55/179 (30%), Gaps = 29/179 (16%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  +I ++  +  +D    +I+ ++SPGGS   G AI+  +  +K     +      +  
Sbjct: 40  ANSIIAQLLYLEAEDPEKDIIMYINSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMG 99

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L + A     A E S +     L          D                       
Sbjct: 100 AFLLAAGAKGKRFALENSRIMIHQPLISGGLKGQATDI---------------------- 137

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227
                  +  + +         L++++     ++           +  EA   GLID V
Sbjct: 138 ------SIHANELLKIKDRLAELLAKNTGKTKEQILRDTERDNYLSSEEAVNYGLIDSV 190


>gi|157374680|ref|YP_001473280.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           sediminis HAW-EB3]
 gi|189082467|sp|A8FTH9|CLPP_SHESH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157317054|gb|ABV36152.1| Endopeptidase Clp [Shewanella sediminis HAW-EB3]
          Length = 203

 Score = 40.8 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 52/176 (29%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +     + + ++SPGGS  AG AI+  +Q +K     +      +  A  
Sbjct: 53  IVAQLLFLESESPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFL 112

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L   A         S V     L      +     + +  + +     K           
Sbjct: 113 LAGGAEGKRHCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILGIKNKLNQML------ 163

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227
                                ++    P +            + AEA + GL+D V
Sbjct: 164 ---------------------ADHTGQPMEIIERDTDRDNFMSAAEAAEYGLVDSV 198


>gi|20129427|ref|NP_609388.1| CG5045 [Drosophila melanogaster]
 gi|7297671|gb|AAF52923.1| CG5045 [Drosophila melanogaster]
 gi|21428864|gb|AAM50151.1| GH10833p [Drosophila melanogaster]
 gi|220944040|gb|ACL84563.1| CG5045-PA [synthetic construct]
 gi|220954028|gb|ACL89557.1| CG5045-PA [synthetic construct]
 gi|223966793|emb|CAR93133.1| CG5045-PA [Drosophila melanogaster]
          Length = 253

 Score = 40.8 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D  S  ++ ++  +  ++    + + ++SPGG   AG AI+  +Q VK   
Sbjct: 55  IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L + A  +  +   + +               +      I  +K 
Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIK- 173

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                                   +   +          R                T  E
Sbjct: 174 -------------------RQLTNIYVKHAKNTYEEMSGRMERD---------HFMTPEE 205

Query: 218 AKKVGLIDVV 227
           AK +G+ID V
Sbjct: 206 AKVLGIIDHV 215


>gi|138896648|ref|YP_001127101.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus
           thermodenitrificans NG80-2]
 gi|196249350|ref|ZP_03148048.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           sp. G11MC16]
 gi|166201825|sp|A4ISQ2|CLPP_GEOTN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134268161|gb|ABO68356.1| ATP-dependent Clp protease [Geobacillus thermodenitrificans NG80-2]
 gi|196211107|gb|EDY05868.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           sp. G11MC16]
          Length = 196

 Score = 40.8 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 65/196 (33%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  ++ ++  ++ +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IIFLGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIYDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   S V     L         ++           
Sbjct: 89  STICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGAQGQATEIEIAAKR------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +        R+++E+   P +            T  
Sbjct: 143 ------------------------ILFLRDKLNRILAENTGQPIEVIERDTDRDNFMTAQ 178

Query: 217 EAKKVGLIDVVGGQEE 232
           +A++ G+ID V  + E
Sbjct: 179 KAQEYGIIDRVLTRLE 194


>gi|14520866|ref|NP_126341.1| nodulation protein nfed [Pyrococcus abyssi GE5]
 gi|5458083|emb|CAB49572.1| nfeD nodulation protein homolog, probable membrane protein
           [Pyrococcus abyssi GE5]
          Length = 440

 Score = 40.8 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSS 75
           + L ++ F++ +        V    I+GQI      +    I     + +A A+I+   +
Sbjct: 4   IILPLLVFAFIASPVLAGNVVYVAQIKGQITSYTYDQFDRYITIAEEN-NAEAIIIEFDT 62

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
           PGG     +A+   IQ+++  K  +        
Sbjct: 63  PGG---RADAMMNIIQRIQQSKVPVIIYVYPPG 92


>gi|289523257|ref|ZP_06440111.1| nodulation efficiency family protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503800|gb|EFD24964.1| nodulation efficiency family protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 323

 Score = 40.8 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 72/227 (31%), Gaps = 40/227 (17%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL--IERIERISR 62
           +K++   + +L L+T      +      + S  V  + + G +    E   I+ + +   
Sbjct: 1   MKRLIWVFSILLLLT------AGPGWAGEKSNVVMVVPLEGTVGTVMETYMIDVLRKAEE 54

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
              A  ++  L +PGG   +   I + I + +    +        A++       ++ I 
Sbjct: 55  --EAYMVVFELDTPGGLVSSMTEITKQITQARVPVVMWVYPSGARAASAGAFLVMASHIA 112

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A                       ++G +   + S     +       N  A QM     
Sbjct: 113 AMAPG------------------TRIGAAHPVLASGGDVDDTMGEKITNDLAAQMRSLAG 154

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
                         RN    +  ++++    T  EA K G+ID +  
Sbjct: 155 T-----------RGRNSRVAE-RMVTESLSLTAEEALKEGVIDCIAS 189


>gi|160947717|ref|ZP_02094884.1| hypothetical protein PEPMIC_01652 [Parvimonas micra ATCC 33270]
 gi|158446851|gb|EDP23846.1| hypothetical protein PEPMIC_01652 [Parvimonas micra ATCC 33270]
          Length = 192

 Score = 40.8 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D  +  ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IIFLSGEVNDQMADLIVAQLLFLESEDPKKDIQIYINSPGGSVSAGLAIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S A     A   + +     L         +      I  V  
Sbjct: 89  STICIGRAASMGAFLLTSGAKGKRFALPNADIMIHQPLGGAQGQAEDIKIQAQKILQV-- 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                             ++++       K    +D   + +  
Sbjct: 147 ----------------------------RATLNEILAKRTGQSLKKIEKDTDRDFYMSAY 178

Query: 217 EAKKVGLIDVV 227
           EAK+ G+ID V
Sbjct: 179 EAKEYGIIDEV 189


>gi|261868693|ref|YP_003256615.1| ATP-dependent Clp protease proteolytic subunit [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|293391572|ref|ZP_06635906.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|261414025|gb|ACX83396.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|290952106|gb|EFE02225.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 188

 Score = 40.8 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED+    ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 24  VIFLSGEVEDNMANLIVAQLLFLESEDPDKDINLYINSPGGSVTAGMAIYDTMQFIKPDV 83

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A+    A   + V     L  +                   
Sbjct: 84  RTLCIGQACSMGAFLLAGGAAGKRGALPHARVMIHQPLGGFRGQ---------------- 127

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            +Q+    +          ++     P +     +D   + +  
Sbjct: 128 --------------ASDIQIHAQEILKIKSTLNERLAFHTGQPIETIEKDTDRDNFMSAQ 173

Query: 217 EAKKVGLIDVV 227
           EAK  GLID V
Sbjct: 174 EAKNYGLIDEV 184


>gi|116243166|sp|Q1GGF6|CLPP_SILST RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 210

 Score = 40.8 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++ +  + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 38  IIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +  + +  +   S V        Y                   
Sbjct: 98  STLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMVHQPSGGYQGQ---------------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +  +           +  +     YD     L      +  
Sbjct: 142 --------------ATDIMIHAEETLKLKRRLNEIYVKHTGQDYDTIEKALERDNFMSPE 187

Query: 217 EAKKVGLIDVV 227
           +AK+ GLID +
Sbjct: 188 QAKEFGLIDEI 198


>gi|127512166|ref|YP_001093363.1| peptidase S41 [Shewanella loihica PV-4]
 gi|126637461|gb|ABO23104.1| peptidase S41 [Shewanella loihica PV-4]
          Length = 1104

 Score = 40.8 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 68/268 (25%), Gaps = 33/268 (12%)

Query: 5    LKKIKTRYVMLSLVTL--TVVYFSWSSHVEDNSPHVARIAIRGQI-------EDSQELIE 55
            LK+ +  +  + L           +   V +N+  VA+ A  G+I         S ++  
Sbjct: 858  LKRDRNSFKTIVLPVANRADAKLRYLDWVNNNNQKVAK-AADGEIGYLHLYAMGSGDIAN 916

Query: 56   RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
                   +     LI+ +    G       I + +++                      +
Sbjct: 917  FAREFYANIEKKGLIIDVRRNRGGNIDSWIIEKLLRRAW----------MFWQPTQGTPN 966

Query: 116  CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
                        ++               +  LG++   +      A        +    
Sbjct: 967  TNMQQTFRGHLVVLTDQLTYSDGETFSAGIKALGLAP-LIGKQTAGAGVWLSGRNSLTDK 1025

Query: 176  QMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
             M +      Y    R + E R I  D +   L     + G +A+               
Sbjct: 1026 GMARVAEYPQYAMDGRWIVEGRGISPDIEVDNLPHAT-FKGEDAQLNK----------AL 1074

Query: 235  QSLYALGVDQSIRKIKDWNPPKNYWFCD 262
              L      + +  IK    P +    D
Sbjct: 1075 NYLKQKLELEPVLPIKAQPMPSSGMAQD 1102


>gi|99081368|ref|YP_613522.1| ATP-dependent Clp protease proteolytic subunit [Ruegeria sp.
           TM1040]
 gi|99037648|gb|ABF64260.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ruegeria sp.
           TM1040]
          Length = 218

 Score = 40.8 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++ +  + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 46  IIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 105

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +  + +  +   S V        Y                   
Sbjct: 106 STLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMVHQPSGGYQGQ---------------- 149

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +  +           +  +     YD     L      +  
Sbjct: 150 --------------ATDIMIHAEETLKLKRRLNEIYVKHTGQDYDTIEKALERDNFMSPE 195

Query: 217 EAKKVGLIDVV 227
           +AK+ GLID +
Sbjct: 196 QAKEFGLIDEI 206


>gi|159030460|emb|CAO91362.1| clpP2 [Microcystis aeruginosa PCC 7806]
          Length = 233

 Score = 40.8 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 63/184 (34%), Gaps = 29/184 (15%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  ++ ++  +  +D    + + ++SPGGS YAG AI+  +Q+++     I      +  
Sbjct: 69  ADSIVAQLLYLEAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVATICFGLAASMG 128

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L   A+   ++  +S +     L         +      I  +              
Sbjct: 129 AFLLCGGAAGKRMSLPSSRIMIHQPLGGAQGQASDIAIQAKEILYI-------------- 174

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
                 Q +  ++          ++                   +  EAK+ GLID+V  
Sbjct: 175 -----KQRLNTMLAHHTGQPYDRIA----------NDTERDFFMSAVEAKEYGLIDLVIS 219

Query: 230 QEEV 233
           + E+
Sbjct: 220 RPEL 223


>gi|298252276|ref|ZP_06976079.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
 gi|297546868|gb|EFH80736.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
          Length = 211

 Score = 40.8 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 63/194 (32%), Gaps = 31/194 (15%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D+    ++ ++  ++ +DS   + + ++SPGGS  AG  I+  ++ +    
Sbjct: 31  IIVVNGPIDDTMSGLVVAQLLYLAAEDSKREINMYINSPGGSINAGLGIYDTMRVLPCPI 90

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                 +  +     L++       +   + +         P +   L      I     
Sbjct: 91  STTCVGYAASFGTILLLAGEKGRRFSMPHARIHLHQ-----PLISGSLSGQASDIDI--- 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +         ++ E      ++    ++   + +  
Sbjct: 143 --------------------HAREILHLRSEINDIIQEHSGQTLERIQKDTNRDFYMSAV 182

Query: 217 EAKKVGLIDVVGGQ 230
           EAK+ G+ID +   
Sbjct: 183 EAKEYGIIDDILTY 196


>gi|205361509|gb|ACI03633.1| capsid protein [Wolbachia phage WO]
          Length = 134

 Score = 40.8 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   +  + ++ +++ +D  Y  FV+L++ +R++  +       G  + G +A ++GL D
Sbjct: 1   PHEPMTSEGLKSLREEIDRLYEMFVQLIARNRSLSIEAIKSTEAGLYF-GEKAVEIGLAD 59

Query: 226 VVGGQEEVWQ 235
            V    E   
Sbjct: 60  GVTTFFEFIN 69


>gi|89073724|ref|ZP_01160238.1| hypothetical membrane protein [Photobacterium sp. SKA34]
 gi|89050499|gb|EAR55991.1| hypothetical membrane protein [Photobacterium sp. SKA34]
          Length = 462

 Score = 40.8 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 90/273 (32%), Gaps = 25/273 (9%)

Query: 12  YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATAL 69
           ++   L++L +   S  +        V  I I+G I    S  +   I    ++ +A  +
Sbjct: 4   FIQYLLLSLVLFCSSVFAQD------VWVINIKGGIGPATSDYVTREISEAQKN-NAAMI 56

Query: 70  IVSLSSPGGSAYAGEAIFRAIQK--------VKNRKPVITEVHEMAASAGYLISCASNII 121
           I+   +PGG   +   I +AI          V                A ++ S A+   
Sbjct: 57  ILQFDTPGGLDSSMRQIIQAITVSPVPVATWVGPSGSRAASAGTYILLASHIASMANGTN 116

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
           + A T +    G   + P+     ++   S   +KSS    + S           M   V
Sbjct: 117 LGAATPVSIGGGNAGESPFTGDKSEEKSKSEDEIKSSEGSDQSSKEPAAKKSGSAMENKV 176

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQS---- 236
           ++ +  +   L              +++    +   A +  +ID +     +V +     
Sbjct: 177 INDAAAYIESLAKLHNRNAKWAVKAVTESASISAETALQKNVIDFIAQDVAKVVEKSNGR 236

Query: 237 LYALGVDQ---SIRKIKDWNPPKNYWFCDLKNL 266
           +  L   +    +  ++     +++ F  L  L
Sbjct: 237 MVKLNGVETPVELNNVRFVEREQDWRFKLLSVL 269


>gi|119486045|ref|ZP_01620107.1| hypothetical protein L8106_05975 [Lyngbya sp. PCC 8106]
 gi|119456820|gb|EAW37948.1| hypothetical protein L8106_05975 [Lyngbya sp. PCC 8106]
          Length = 291

 Score = 40.8 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 14/182 (7%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS++++  I     D     ++    +PGG   A E I  A+ + + +  V   V   
Sbjct: 69  IEDSEQVLRAIRLTPSDVPIDLIL---HTPGGLVLATEQIAHALIRHQAK--VTVFVPHY 123

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           A S G +++ AS+ IV  E +++G I            L  L     S     +  +   
Sbjct: 124 AMSGGTMLALASDEIVMDENAVLGPIDPQLGNFPAASILKVLEDKPIS----EIDDQTLI 179

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-----WTGAEAKKV 221
            ++++ KA++ +QD V +     +       +        L+ GRI         EA K+
Sbjct: 180 MADISRKAIRQVQDFVRTLLEDNIPQQKIDPSRIDGVINALTTGRITHDCPIMAEEAAKL 239

Query: 222 GL 223
           GL
Sbjct: 240 GL 241


>gi|205361507|gb|ACI03632.1| capsid protein [Wolbachia phage WO]
          Length = 134

 Score = 40.8 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   +  + ++ ++D +D  Y  FV+L++ +R++  +       G  + G +A ++GL D
Sbjct: 1   PHEPMTSEGLKSLRDEIDRLYEMFVQLIARNRSLSIEAIKSTEAGLYF-GEKAVEIGLAD 59

Query: 226 VVGGQEEVWQ 235
            V    E   
Sbjct: 60  GVTTFFEFIN 69


>gi|308069939|ref|YP_003871544.1| membrane-bound serine protease (ClpP class) [Paenibacillus polymyxa
           E681]
 gi|305859218|gb|ADM71006.1| Membrane-bound serine protease (ClpP class) [Paenibacillus polymyxa
           E681]
          Length = 455

 Score = 40.8 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 81/236 (34%), Gaps = 21/236 (8%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISR 62
             K I     ++  V L  +  S S+  +     V  I +  +IE    + +ER    + 
Sbjct: 9   SRKLIFLTLWIMVSVLLLPLVHSESAAAQTKGGAVFVIPVDQEIEQGLGKFMERGFAEAA 68

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           D  A  +++ +++PGG     E + + I+   +  P +  +   AASAG  I+ ++N IV
Sbjct: 69  DSKAGLILLDINTPGGRVDTAEKLGKLIK--DSPIPTVAYIRGEAASAGSYIALSANKIV 126

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
               S++G                 L        + P        S  +          +
Sbjct: 127 MKPGSIIG--------------AAALVDGRGQAITDPKTVAWWKSSMASAAEAGGRNPDI 172

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE-EVWQSL 237
                     VS        +   +      T  EA K+G  D +   E EV Q +
Sbjct: 173 ARGMVDSKTTVSIPEMNFSKENGQIVS---LTSEEALKLGYADHIASSEQEVIQWM 225


>gi|145341425|ref|XP_001415810.1| mitochondrial Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
 gi|144576033|gb|ABO94102.1| mitochondrial Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
          Length = 232

 Score = 40.8 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G I+D+     + ++  +        + + ++SPGGS  AG  I+  +Q V    
Sbjct: 58  IVFVNGPIDDNVSSLTVAQLLFLESVSPTQPIWMYINSPGGSVTAGLGIYDTMQYVSPPI 117

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +       +   S V                  + +  + +  
Sbjct: 118 HTLCVGQASSMGSLLLAAGEPGQRRSLPHSRVMLHQPSG---GASGQASDIAIHAQEI-- 172

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                       +N +   +   +  +  ++    V+  R+               T  +
Sbjct: 173 ------------LNVRQKLVQIYMKHTKQNFDSIGVTLERD------------TFMTPED 208

Query: 218 AKKVGLIDVV 227
           AK+ GLID V
Sbjct: 209 AKEFGLIDEV 218


>gi|218461999|ref|ZP_03502090.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli Kim
           5]
          Length = 203

 Score = 40.8 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D+    +  ++  +  ++    + + ++SPGG   +G A++  ++ ++   
Sbjct: 33  IIFLNGEVNDTVSALVCAQLLFLEAENPHKPINLYINSPGGVVTSGLAMYDTMRFIRAPV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                         + +   +   + +   + G  G     P     + +     +    
Sbjct: 93  --------------HTLCMGTARSMGSFLLMAGEPGGRAALPNASILIHQPSGGFQG--- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +  + +  +     RL +E     Y+     +   R  T  
Sbjct: 136 -------------QASDMLIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAE 182

Query: 217 EAKKVGLIDVV 227
           EA + GLID +
Sbjct: 183 EALEWGLIDRI 193


>gi|254476195|ref|ZP_05089581.1| Clp protease [Ruegeria sp. R11]
 gi|214030438|gb|EEB71273.1| Clp protease [Ruegeria sp. R11]
          Length = 202

 Score = 40.8 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 61/190 (32%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++ +  + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 30  IIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPK- 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                                + +V  + + +GS+ +    P ++  L    V +     
Sbjct: 89  --------------------VSTLVIGQAASMGSLLLTAGEPGMRFSLPNSRVMVHQPSG 128

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                                +             V  +          L      +  E
Sbjct: 129 GFQGQATDIMIHAEETLKLKKRLNEIY--------VKHTGQDYDSIVNALERDNFMSPEE 180

Query: 218 AKKVGLIDVV 227
           AK+ GLID +
Sbjct: 181 AKEFGLIDEI 190


>gi|291237477|ref|XP_002738663.1| PREDICTED: Dci protein-like [Saccoglossus kowalevskii]
          Length = 303

 Score = 40.8 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/87 (11%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW----QSLYALGVDQ 244
           +     ++     +    L  G++++  +A+ +GL+D +   ++V     + +       
Sbjct: 189 WFIETMKNTIGHRETEKSLQLGKLYSPEQAENIGLVDQICPPDDVLGCARKEMVKWLKIP 248

Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSL 271
              +I      +N    +L +     +
Sbjct: 249 DHARILTKQLMRNELINNLSSKRKEDI 275


>gi|167748739|ref|ZP_02420866.1| hypothetical protein ANACAC_03513 [Anaerostipes caccae DSM 14662]
 gi|167651709|gb|EDR95838.1| hypothetical protein ANACAC_03513 [Anaerostipes caccae DSM 14662]
          Length = 202

 Score = 40.8 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 61/186 (32%), Gaps = 28/186 (15%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +   D    + + ++SPGGS  AG AI+  ++ ++     I      +  A  
Sbjct: 44  IVAQMLFLEAQDPGRDIQLYINSPGGSVTAGFAIYDTMKYIQCDVATICVGLAASFGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L        +A   + +           ++     + +                      
Sbjct: 104 LAGGTQGKRMALPNAEIMIHQPAIHGNGIQGPASDIKI---------------------- 141

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231
                M D +  +     R+++E+     ++           +  EA K GLID V  + 
Sbjct: 142 -----MSDYMQKNKQRLNRILAENTGRSIEEIERDTDRDHFMSAEEALKYGLIDSVISKR 196

Query: 232 EVWQSL 237
           +  Q L
Sbjct: 197 QKKQHL 202


>gi|111115440|ref|YP_710058.1| ATP-dependent Clp protease proteolytic component [Borrelia afzelii
           PKo]
 gi|216263526|ref|ZP_03435521.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           afzelii ACA-1]
 gi|123145670|sp|Q0SMP6|CLPP_BORAP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|110890714|gb|ABH01882.1| ATP-dependent Clp protease proteolytic component [Borrelia afzelii
           PKo]
 gi|215980370|gb|EEC21191.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           afzelii ACA-1]
          Length = 197

 Score = 40.8 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  +I ++  +  +DS   + + L+SPGGS  AG AI+  +Q +K   
Sbjct: 33  IIFLSGEINDPKADTVIAQLLFLESEDSNKDIYLYLNSPGGSITAGLAIYDTMQYIKPDV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             I      +  A  L + A     +   S +       
Sbjct: 93  RTICIGQAASMGAFLLAAGAKGKRESLTYSRIMIHQPWG 131


>gi|71892027|ref|YP_277757.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|110816455|sp|Q493F8|CLPP_BLOPB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|71796133|gb|AAZ40884.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 208

 Score = 40.8 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IEDS    ++ ++  +  ++S   + + ++SPGG   AG +I+  IQ V+   
Sbjct: 43  IIFMTGTIEDSVANLIVAQMMFLESENSEKDIHLYINSPGGVITAGMSIYDTIQFVRPDV 102

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    + SA  L S           + +     L  +      +      I  +K+
Sbjct: 103 STFCMGQAASMSAFLLASGTKGKRFCLPNARIMIHQPLGSFQGQATDIAIHTREILKIKN 162

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
           +  K                              L+++      D            +  
Sbjct: 163 NINK------------------------------LMAKHTGQSIDIINKDTERDCFLSAD 192

Query: 217 EAKKVGLIDVV 227
           EA K GL+D V
Sbjct: 193 EAMKYGLVDCV 203


>gi|125975222|ref|YP_001039132.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium
           thermocellum ATCC 27405]
 gi|256003116|ref|ZP_05428108.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           thermocellum DSM 2360]
 gi|281419196|ref|ZP_06250212.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           thermocellum JW20]
 gi|166201818|sp|A3DJ10|CLPP_CLOTH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|125715447|gb|ABN53939.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium
           thermocellum ATCC 27405]
 gi|255992807|gb|EEU02897.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           thermocellum DSM 2360]
 gi|281407062|gb|EFB37324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           thermocellum JW20]
 gi|316939386|gb|ADU73420.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           thermocellum DSM 1313]
          Length = 194

 Score = 40.8 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 64/192 (33%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  +I D     ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q VK   
Sbjct: 29  IIVLSDEINDVTASLVVAQMLFLEAEDPDKDIQLYINSPGGSVTAGFAIYDTMQYVKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   S +     L      +     + +  + +  
Sbjct: 89  STICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLG---GARGQATDIKIHAEQIIK 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
              K                                SE    P++K    ++   + +  
Sbjct: 146 IKNKLNRIL---------------------------SERTGQPFEKIERDTERDFFMSAE 178

Query: 217 EAKKVGLIDVVG 228
           EAK  G++D V 
Sbjct: 179 EAKAYGIVDEVM 190


>gi|328947527|ref|YP_004364864.1| ATP-dependent Clp protease proteolytic subunit [Treponema
           succinifaciens DSM 2489]
 gi|328447851|gb|AEB13567.1| ATP-dependent Clp protease proteolytic subunit [Treponema
           succinifaciens DSM 2489]
          Length = 216

 Score = 40.8 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 65/192 (33%), Gaps = 34/192 (17%)

Query: 41  IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
           I + G+I +  ++++I ++  +  D+    + + + SPGG  YAG AIF  I+ +     
Sbjct: 50  ILLSGEICEELAEKIIRQLLILEADND-KPIYIYIDSPGGDVYAGFAIFDTIRFINAPVY 108

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
           +I      +A+A  L+S      +    S                 +  +   I+   + 
Sbjct: 109 IIGTGLIASAAALILLSVPKERRLGLPHSSYLIHQ-------PSSGMKGVATDIEIHAAE 161

Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAE 217
             K                              ++SE      +K    +D   W    E
Sbjct: 162 LAKTRTK-----------------------INEIISEQTGTSLEKVSKDTDRDYWLNSEE 198

Query: 218 AKKVGLIDVVGG 229
           A + GLI  V  
Sbjct: 199 AVQYGLICKVIT 210


>gi|163789795|ref|ZP_02184232.1| ATP-dependent Clp protease proteolytic subunit [Carnobacterium sp.
           AT7]
 gi|159875017|gb|EDP69084.1| ATP-dependent Clp protease proteolytic subunit [Carnobacterium sp.
           AT7]
          Length = 197

 Score = 40.8 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 58/192 (30%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G ++D     +I ++  +   DS   + + ++SPGGS  AG AIF  +  +K   
Sbjct: 29  IIMLSGPVDDDLANAVIAQLLFLDAQDSEKDIYIYINSPGGSVTAGLAIFDTMNFIKADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +       A   + +               ++           
Sbjct: 89  QTIAMGMAASMGSFLLTAGTKGKRYALPNAEIMIHQPSGGSQGQATEIEIAAR------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +  +     +++SE    P +            +  
Sbjct: 142 -----------------------HILKTRERLNKILSERTGQPIEVIQRDTDRDNYMSAE 178

Query: 217 EAKKVGLIDVVG 228
           +AK  GLID + 
Sbjct: 179 DAKAYGLIDEIM 190


>gi|152978444|ref|YP_001344073.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           succinogenes 130Z]
 gi|171704240|sp|A6VME1|CLPP_ACTSZ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|150840167|gb|ABR74138.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Actinobacillus succinogenes 130Z]
          Length = 194

 Score = 40.8 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED+    ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  VIFLSGEVEDNMANLIVAQLLFLESEDPDKDINLYINSPGGSVTAGMAIYDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +                A  +   A                           I+    
Sbjct: 89  RTLC-------IGQACSMGAFLLAGGAAGKRAALPNARVMIHQPLGGFRGQASDIQIHAQ 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
             +K + +    +   +                         P ++    +D   + +  
Sbjct: 142 EILKIKHTLNERLAFHS-----------------------GQPLEQIEKDTDRDNFMSAE 178

Query: 217 EAKKVGLIDVV 227
           EA+  GLID V
Sbjct: 179 EAQNYGLIDSV 189


>gi|317486004|ref|ZP_07944859.1| Clp protease [Bilophila wadsworthia 3_1_6]
 gi|316922777|gb|EFV44008.1| Clp protease [Bilophila wadsworthia 3_1_6]
          Length = 207

 Score = 40.8 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 53/189 (28%), Gaps = 32/189 (16%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +  ++  +   D    + + ++SPGGS  AG AI+  +  +      +      +  A  
Sbjct: 49  ICAQLLFLESQDPEKEIYLYINSPGGSVTAGMAIYDTMNYITPPIATVCMGRAASMGAFL 108

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L +    +  A   S V     L  +      +D                          
Sbjct: 109 LSAGQKGMRYALPNSQVMIHQPLGGFQGQATDIDIHARE--------------------- 147

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV-VGGQ 230
                    +         L+++    P +K           T   A+  GL+D  +  +
Sbjct: 148 ---------ILRMRETLNGLLAKHTGQPIEKIAQDTERDNFMTAEMAQAYGLVDKVLASR 198

Query: 231 EEVWQSLYA 239
            ++      
Sbjct: 199 RDLLAEKSE 207


>gi|262066529|ref|ZP_06026141.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           periodonticum ATCC 33693]
 gi|294783780|ref|ZP_06749104.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 1_1_41FAA]
 gi|291379763|gb|EFE87281.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           periodonticum ATCC 33693]
 gi|294480658|gb|EFG28435.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 1_1_41FAA]
          Length = 193

 Score = 40.8 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 55/179 (30%), Gaps = 29/179 (16%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  +I ++  +  +D    +I+ ++SPGGS   G AI+  +  +K     +      +  
Sbjct: 40  ANSIIAQLLYLESEDPEKDIIMYINSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMG 99

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L S A     A E S +     L          D                       
Sbjct: 100 AFLLSSGAKGKRFALENSRIMIHQPLISGGLKGQATDI---------------------- 137

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227
                  +  + +         L++ +     ++           +  EA + GLID V
Sbjct: 138 ------SIHANELLKIKDRLAELLARNTGKTKEQILNDTERDNYLSSEEAVRYGLIDSV 190


>gi|167623574|ref|YP_001673868.1| hypothetical protein Shal_1643 [Shewanella halifaxensis HAW-EB4]
 gi|167353596|gb|ABZ76209.1| protein of unknown function DUF107 [Shewanella halifaxensis
           HAW-EB4]
          Length = 503

 Score = 40.8 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 77/222 (34%), Gaps = 22/222 (9%)

Query: 29  SHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDD-----SATALIVSLSSPGGSAY 81
                  P V  +A  G I    S+ L + IER + +          +++ + +PGG   
Sbjct: 35  ESAITARPQVLVLAFEGAIGPATSEYLTQGIERANVNAALGNGEIELIVIVMDTPGGLVS 94

Query: 82  AGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140
           +   I ++I          +      AASAG  I  A +I   AE + +G+   +   P 
Sbjct: 95  SLRDINQSILNSSVPIACLVAPPGARAASAGTYILYACHIAAMAEATTLGAATPVSIGPG 154

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
             P                 K+ P+  S +  K +      + +            RN  
Sbjct: 155 SAPTPAPKQDPKD-----DDKSAPATPSAMEKKILNDSIAYIRALAQL------RGRNEQ 203

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           + +   + +    T  EA ++ +I+++    +  + +  L  
Sbjct: 204 WAEL-AVKEAATLTANEALEMNVINLI--SPDAPRLVAELTG 242


>gi|322381666|ref|ZP_08055631.1| ATP-dependent Clp protease proteolytic subunit-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321154378|gb|EFX46689.1| ATP-dependent Clp protease proteolytic subunit-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 238

 Score = 40.8 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 61/195 (31%), Gaps = 43/195 (22%)

Query: 41  IAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
           I I G I           +    E ++R+      + + + ++SPGGS + G AI   ++
Sbjct: 11  IFIYGDIVTYQWDEVDTSATSFKEDLDRLGD---LSTINLYINSPGGSVFEGIAIHNMLK 67

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           + K    V   V  +AAS   +I+ A +     + S++                      
Sbjct: 68  RHKAN--VHVHVDALAASIASVIAMAGDPFYMPKNSMLMIHN------------------ 107

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
                          +   +             +    V L      +  +K   + D  
Sbjct: 108 ----------PWIFAWGNASEMRKIADDLDRIGNSSKQVYLQKAGDKLSDEKLQDMLDAE 157

Query: 212 IW-TGAEAKKVGLID 225
            W +  EA + GL D
Sbjct: 158 TWLSADEAFEYGLCD 172


>gi|282921759|ref|ZP_06329476.1| phage protease [Staphylococcus aureus A9765]
 gi|282594021|gb|EFB99010.1| phage protease [Staphylococcus aureus A9765]
          Length = 257

 Score = 40.8 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 70/221 (31%), Gaps = 38/221 (17%)

Query: 41  IAIRGQIEDSQELIERI------ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           I I G I   +     +       ++      + + V ++S GGS + G AI+  ++   
Sbjct: 20  IFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHP 79

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
            +      V  +AAS   +I+ + + I   + S +                         
Sbjct: 80  AKIN--IYVDALAASIASVIAMSGDTIFMHKNSFLMIHN--------------------- 116

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213
                             +  +    +  +        + +++N+  ++   + D   W 
Sbjct: 117 --------SWVMTVGNAEELRKTADLLDKTDAVSNSAYLDKAKNLDQEQLKQMLDAETWL 168

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           T  EA   GLID V G  E+  S+      +     +D   
Sbjct: 169 TAEEALSFGLIDEVLGANEIAASISKEQYKRFENVPEDLKK 209


>gi|170719455|ref|YP_001747143.1| hypothetical protein PputW619_0268 [Pseudomonas putida W619]
 gi|169757458|gb|ACA70774.1| protein of unknown function DUF107 [Pseudomonas putida W619]
          Length = 449

 Score = 40.8 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 69/233 (29%), Gaps = 24/233 (10%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPG 77
           L V+   ++   +     +  ++I   I    +  L+  +++      A  +++ + +PG
Sbjct: 10  LLVLMLGFAPGSQAAPGAIWVLSIDDAIGPASADYLMRGLDQARE-QGAQLVVIRMDTPG 68

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137
           G   A   I + I                 +        A     AA             
Sbjct: 69  GLDSAMRQIIKVILA---------------SPVPVATFVAPGGARAASAGTYILYASHVA 113

Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197
                  L     +   V+       P      N    Q +     +    ++R +++ R
Sbjct: 114 AMAPGTNL----GAATPVQVGSPTGAPKDDKAKNDTNEQALARKQVNDAAAYIRGLAQLR 169

Query: 198 NIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRK 248
               D     + +    + +EA K  +ID V     ++ + L    +  + + 
Sbjct: 170 GRNADWAEKAVREAVSLSASEAFKQKVIDHVANDLPDLLRQLDGKTLIAADQP 222


>gi|15966135|ref|NP_386488.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           meliloti 1021]
 gi|307305688|ref|ZP_07585435.1| Endopeptidase Clp [Sinorhizobium meliloti BL225C]
 gi|307317691|ref|ZP_07597130.1| Endopeptidase Clp [Sinorhizobium meliloti AK83]
 gi|7387587|sp|Q9X7L1|CLPP3_RHIME RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|4539549|emb|CAB39976.1| CLP protease proteolytic subunit [Sinorhizobium meliloti]
 gi|15075405|emb|CAC46961.1| CLP protease proteolytic subunit [Sinorhizobium meliloti 1021]
 gi|306896849|gb|EFN27596.1| Endopeptidase Clp [Sinorhizobium meliloti AK83]
 gi|306902391|gb|EFN32987.1| Endopeptidase Clp [Sinorhizobium meliloti BL225C]
          Length = 195

 Score = 40.8 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 38/195 (19%)

Query: 41  IAIRGQIED--SQELIERI--ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           I I G I    +Q++  ++     + DD      + ++SPGG   +G++I   I+ VK +
Sbjct: 30  IFIYGTITQELAQKVCSQLVALAAASDDDIR---LFVNSPGGHVESGDSIHDMIKFVKPK 86

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
              I      +A A   ++      +    +             +   ++          
Sbjct: 87  VWTIGTGWVASAGALIYVAAPKEQRLCLPNTRFLLHQPSGGTRGMASDIE---------- 136

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG- 215
                               +    +        R+ SE+   P DK    +D   W G 
Sbjct: 137 --------------------IQAREIIKMNERLNRIFSEATGQPVDKIAKDTDRDYWLGA 176

Query: 216 AEAKKVGLIDVVGGQ 230
            EAK  GL+  +   
Sbjct: 177 EEAKAYGLVSRIVTS 191


>gi|330444244|ref|YP_004377230.1| Clp protease [Chlamydophila pecorum E58]
 gi|328807354|gb|AEB41527.1| Clp protease [Chlamydophila pecorum E58]
          Length = 194

 Score = 40.8 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 29/180 (16%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
            + + I ++  +   D    +   ++SPGGS  AG AI+  I+ + +    +      + 
Sbjct: 36  SAADAIRKLWYLEMTDPGKPITFVINSPGGSVDAGFAIWDQIKMLTSPVTTVVTGLAASM 95

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
            +   +  A     A   S +         P      D    + + +             
Sbjct: 96  GSVLSLCAAPGRRFATPHSRIMIHQPSIGGPITGQATDLDIHAREIL------------- 142

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                           +    V +  E+ + P D      D  +W T  EAK  GL+D +
Sbjct: 143 ---------------KTKARIVDVYVEATHQPRDVIEKAIDRDMWMTADEAKDFGLLDGI 187


>gi|259416932|ref|ZP_05740852.1| Clp protease [Silicibacter sp. TrichCH4B]
 gi|259348371|gb|EEW60148.1| Clp protease [Silicibacter sp. TrichCH4B]
          Length = 218

 Score = 40.8 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++ +  + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 46  IIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 105

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +  + +  +   S V        Y                   
Sbjct: 106 STLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMVHQPSGGYQGQ---------------- 149

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +  +           +  +     YD     L      +  
Sbjct: 150 --------------ATDIMIHAEETLKLKRRLNEIYVKHTGQDYDTIEKALERDNFMSPE 195

Query: 217 EAKKVGLIDVV 227
           +AK+ GLID +
Sbjct: 196 QAKEFGLIDEI 206


>gi|237739236|ref|ZP_04569717.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           2_1_31]
 gi|229422844|gb|EEO37891.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           2_1_31]
          Length = 193

 Score = 40.8 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 55/179 (30%), Gaps = 29/179 (16%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  +I ++  +  +D    +I+ ++SPGGS   G AI+  +  +K     +      +  
Sbjct: 40  ANSIIAQLLYLESEDPEKDIIMYINSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMG 99

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L S A     A E S +     L          D                       
Sbjct: 100 AFLLSSGAKGKRFALENSRIMIHQPLISGGLKGQATDI---------------------- 137

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227
                  +  + +         L++ +     ++           +  EA + GLID V
Sbjct: 138 ------SIHANELLKIKDRLAELLARNTGKTKEQILNDTERDNYLSSEEAVRYGLIDSV 190


>gi|332358291|gb|EGJ36117.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK355]
          Length = 196

 Score = 40.8 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 61/192 (31%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D   V+   +  
Sbjct: 87  QTIVMGVAASMGTIIASSGAKGKRFMLPNAEYLIHQPMGGAGSGTQQTDMAIVAEHLL-- 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      + +   ++++E+     ++    ++   W +  
Sbjct: 145 --------------------------RTRNTLEKILAENSGKSVEQIHKDAERDYWMSAQ 178

Query: 217 EAKKVGLIDVVG 228
           E  + G ID + 
Sbjct: 179 ETLEYGFIDEIM 190


>gi|203284513|ref|YP_002222253.1| ATP-dependent Clp protease proteolytic component [Borrelia duttonii
           Ly]
 gi|203288047|ref|YP_002223062.1| ATP-dependent Clp protease proteolytic component [Borrelia
           recurrentis A1]
 gi|201083956|gb|ACH93547.1| ATP-dependent Clp protease proteolytic component [Borrelia duttonii
           Ly]
 gi|201085267|gb|ACH94841.1| ATP-dependent Clp protease proteolytic component [Borrelia
           recurrentis A1]
          Length = 199

 Score = 40.8 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D     +I ++  +  +DS   + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 35  IIFLSGEINDLRGDTVIAQLLFLESEDSKKDIYLYINSPGGSITAGLAIYDTMQYIKPDV 94

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             I      + +A  L   A     +   S +       
Sbjct: 95  RTICIGQAASMAAFLLAGGAVGKRESLSYSRIMIHQPWG 133


>gi|329122525|ref|ZP_08251109.1| ATP-dependent Clp protease, protease subunit [Haemophilus aegyptius
           ATCC 11116]
 gi|327473154|gb|EGF18577.1| ATP-dependent Clp protease, protease subunit [Haemophilus aegyptius
           ATCC 11116]
          Length = 211

 Score = 40.8 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED     ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 47  VIFLSGEVEDRMANLIVAQLLFLESEDPTKDINIYINSPGGSVTAGMAIYDTMQFIKPDI 106

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L    +    A   + V     L  +                   
Sbjct: 107 RTLCIGQACSMGAFLLAGGTAGKRAALPNARVMIHQPLGGFRGQ---------------- 150

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            +Q+    +    H     ++       ++    +D   + +  
Sbjct: 151 --------------ASDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDTDRDNFMSAE 196

Query: 217 EAKKVGLIDVV 227
           EA+  GL+D V
Sbjct: 197 EAQVYGLVDEV 207


>gi|308069047|ref|YP_003870652.1| ATP-dependent Clp protease proteolytic subunit (endopeptidase Clp)
           [Paenibacillus polymyxa E681]
 gi|305858326|gb|ADM70114.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Paenibacillus polymyxa E681]
          Length = 194

 Score = 40.8 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 31/182 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  +I ++  ++ +D    + + ++SPGGS  AG AI+  +Q +K     I      +  
Sbjct: 42  ANSIIAQLLFLAAEDPEKEIYMYINSPGGSTSAGFAIYDTMQYIKPDVHTICTGFAASFG 101

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L++ A     A   S +                                        
Sbjct: 102 AILLLAGAKGKRSALPNSEIMIHQPHGGAQGQ---------------------------- 133

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228
                + +    +  +     R+ +E     ++K     D   + +  EA + G+ID V 
Sbjct: 134 --ASDIAISAKRILWTREKATRITAERTGQSFEKVEKDMDRDFYMSAQEALEYGVIDQVI 191

Query: 229 GQ 230
             
Sbjct: 192 TS 193


>gi|283852376|ref|ZP_06369646.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           sp. FW1012B]
 gi|283572224|gb|EFC20214.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           sp. FW1012B]
          Length = 204

 Score = 40.8 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 54/185 (29%), Gaps = 31/185 (16%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +  ++  +  +D    + + ++SPGGS  AG AI+  +Q V  +   +      +  A  
Sbjct: 44  ICAQLLFLESEDPEKEIFMYINSPGGSVTAGLAIYDTMQYVLPKVSTLCMGQAASMGALL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A+ +  A   S +     +  +      +D     I  +                 
Sbjct: 104 LCAGATGMRYALPHSRIMIHQPMGGFQGQATDIDIHAREILRI----------------- 146

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231
                              +++       +K              EA   GLID V    
Sbjct: 147 -------------RESLNEIMARHTGQDIEKVRVDTDRDYFMNADEAVTYGLIDKVLTSR 193

Query: 232 EVWQS 236
           E    
Sbjct: 194 EPVAK 198


>gi|291298893|ref|YP_003510171.1| endopeptidase Clp [Stackebrandtia nassauensis DSM 44728]
 gi|290568113|gb|ADD41078.1| Endopeptidase Clp [Stackebrandtia nassauensis DSM 44728]
          Length = 210

 Score = 40.8 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 62/185 (33%), Gaps = 30/185 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +  DD    + + ++SPGGS  A  AI+  +Q V+     +      +
Sbjct: 46  TSANDIMSQLLVLEGDDPERDIEMYINSPGGSLTALMAIYDTMQYVRPDIRTVCMGQAAS 105

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L + A    +A   S V       +  Y +    ++                   
Sbjct: 106 AAAILLAAGAKGKRLALPNSRVIIHQPATEGTYGQASDMEIQAR---------------- 149

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226
                         +        ++++       DK    +   +I    EAK+ G++D 
Sbjct: 150 -------------EIMRMRDQMEKVLARHTGQELDKVRRDIERDKILNADEAKEYGIVDT 196

Query: 227 VGGQE 231
           V    
Sbjct: 197 VMEYR 201


>gi|224373739|ref|YP_002608111.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nautilia
           profundicola AmH]
 gi|223589486|gb|ACM93222.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nautilia
           profundicola AmH]
          Length = 196

 Score = 40.8 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I ++G+I D  S  ++ ++  +  ++    + + ++SPGG   +G AI+  +  +K   
Sbjct: 30  IIMLQGEINDHVSSIIVAQMLFLEAENPEKDIYLYINSPGGVVTSGMAIYDTMNYIKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S A     A   + +     L         ++           
Sbjct: 90  VTICMGQAASMGAFLLSSGAKGKRFALPHARIMIHQPLGGAQGQATDIEIHAKE------ 143

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                   +        ++++E+      K    ++   + +  
Sbjct: 144 ------------------------ILRMKKELNKILAENTGQSVRKIERDTERDFFMSAE 179

Query: 217 EAKKVGLIDVV 227
           EA K GLID V
Sbjct: 180 EAMKYGLIDKV 190


>gi|319946500|ref|ZP_08020736.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           australis ATCC 700641]
 gi|319747331|gb|EFV99588.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           australis ATCC 700641]
          Length = 196

 Score = 40.8 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 31/193 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 27  IIMVTGPVEDQMANSIIAQLLFLDAQDNTKDIYMYVNTPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +K+
Sbjct: 87  QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                        H   ++++E+      K    ++   W T  
Sbjct: 147 ----------------------------RHRLEKILAENSGQTLKKIHADAERDNWMTAE 178

Query: 217 EAKKVGLIDVVGG 229
           E    G ID +  
Sbjct: 179 ETLAYGFIDEIMS 191


>gi|213692575|ref|YP_002323161.1| Endopeptidase Clp [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524036|gb|ACJ52783.1| Endopeptidase Clp [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320458727|dbj|BAJ69348.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 233

 Score = 40.8 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 30/181 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    +++ ++SPGGS  A  AI+  +Q +K     +      +
Sbjct: 77  ASADDVMAQLLVLESQDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 136

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L S      +    + V          + K                         
Sbjct: 137 AAAILLASGTEGKRLMLPNARVLIHQPAIDQGFGKA------------------------ 172

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226
                  +++    +     W    +++      +K    +      T  EAK+ G++D 
Sbjct: 173 -----TEIEIQAKEMLRMREWLEETLAKHTGQDVEKIRRDIEVDTFLTAPEAKEYGIVDE 227

Query: 227 V 227
           V
Sbjct: 228 V 228


>gi|195118808|ref|XP_002003928.1| GI20379 [Drosophila mojavensis]
 gi|193914503|gb|EDW13370.1| GI20379 [Drosophila mojavensis]
          Length = 223

 Score = 40.8 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 65/184 (35%), Gaps = 7/184 (3%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D  S  ++ ++  +  ++    + + ++SPGG   AG AI+  +Q VK   
Sbjct: 24  IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 83

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV----LFQYPYVKPFLDKLGVSIK 153
                    +  +  L + A  +  +   + +           Q   +    +++    +
Sbjct: 84  ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKR 143

Query: 154 SVKSSPMKAEPSPFSEV-NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
            + +  +K   + + E+ +           ++     +  V E        +   SDG  
Sbjct: 144 QLTNIYVKHAKNSYDEMCSRMERDHFMTPEEAKTLGIIDHVLEHPPETVSDSGPTSDGGP 203

Query: 213 WTGA 216
            TG 
Sbjct: 204 ATGK 207


>gi|229083044|ref|ZP_04215449.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock4-2]
 gi|228700261|gb|EEL52842.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock4-2]
          Length = 234

 Score = 40.8 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 63/195 (32%), Gaps = 33/195 (16%)

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116
           I +   D +   L+VS++SPGG  + G  I+ A++       V      +AASA  +I+ 
Sbjct: 9   ISKALDDANGDDLVVSINSPGGYVHEGSEIYTALKNYPGHVEVQIVG--LAASAASVIAM 66

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
           A++ +  + T+ +                                       +++  A  
Sbjct: 67  AADKVRISPTAQIMIHNASM-------------------------WNGGDHRDMSKAAEM 101

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-AEAKKVGLIDVVGGQEEVWQ 235
           +          + ++          ++ L +     W G  +A +   +D +   E   +
Sbjct: 102 LKTTDRAIVNAYVIKS-----GKSEEELLNMMAEETWMGPQQALENNFVDEIMFMENPVK 156

Query: 236 SLYALGVDQSIRKIK 250
              +      + +  
Sbjct: 157 MTASTATVTMLPQKV 171


>gi|45357586|ref|NP_987143.1| hypothetical protein MMP0023 [Methanococcus maripaludis S2]
 gi|45047146|emb|CAF29579.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 274

 Score = 40.8 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            IEDS+E++  I     D     ++    +PGG   A E I  A+++ K +  VI   + 
Sbjct: 66  TIEDSEEILRAIRMTPEDMPIDLIL---HTPGGLVLASEQIAIALKEHKAKTTVIIPHYA 122

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           M+   G LI+ A++ I+  + +++G +            ++ +    
Sbjct: 123 MSG--GSLIALAADEIIIDKNAVMGPVDPQIGQYPAASIINAINTKY 167


>gi|254467045|ref|ZP_05080456.1| Clp protease [Rhodobacterales bacterium Y4I]
 gi|206687953|gb|EDZ48435.1| Clp protease [Rhodobacterales bacterium Y4I]
          Length = 202

 Score = 40.8 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 60/190 (31%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++ +  + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 30  IIFVNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +    +  +   S V        +                   
Sbjct: 90  STLVIGQAASMGSLLLTAGEKGMRFSLPNSRVMVHQPSGGFQG----------------- 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                +    +E   K  + + ++           V             L      +  E
Sbjct: 133 --QATDIMIHAEETLKLKKRLNEIYVKHTGQDYETV----------VNALERDNFMSPEE 180

Query: 218 AKKVGLIDVV 227
           AK  GLID +
Sbjct: 181 AKAFGLIDEI 190


>gi|21910478|ref|NP_664746.1| putative ClpP protease ATP-dependent protease proteolytic subunit -
           phage associated [Streptococcus pyogenes MGAS315]
 gi|28876226|ref|NP_795465.1| putative ClpP protease ATP-dependent protease proteolytic subunit
           [Streptococcus pyogenes phage 315.2]
 gi|28895825|ref|NP_802175.1| ClpP-like protease [Streptococcus pyogenes SSI-1]
 gi|21904677|gb|AAM79549.1| putative ClpP protease ATP-dependent protease proteolytic subunit -
           phage-associated [Streptococcus pyogenes MGAS315]
 gi|28811074|dbj|BAC64008.1| putative ClpP-like protease [Streptococcus pyogenes SSI-1]
          Length = 221

 Score = 40.8 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 85/253 (33%), Gaps = 48/253 (18%)

Query: 40  RIAIRGQIE--DSQELIE-----------RIERISRDDSATALIVSLSSPGGSAYAGEAI 86
           RI ++G +   +SQE+ +            IE++  D+S   +++ ++S GG    G  I
Sbjct: 4   RINLKGPLISNNSQEVYDYYGMEAVSAKSIIEKLPEDNS--DIVLEVNSNGGLVTVGSEI 61

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
           + A++  K +          +A++  ++     ++      +V                 
Sbjct: 62  YTALRNYKGKVTAEITGMAASAASVAVMGADKVVMSPTAQMMVH---------------- 105

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
                         KA  +  +  +    +    +  S        V+++     +   +
Sbjct: 106 --------------KALFNWVAGNSDDLDKASNALKSSDKAIVNAYVAKTGKSEDEIMDL 151

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           + +    +  EA + G  D V    E   S+    +      I D+   +     ++ N+
Sbjct: 152 MRNETFMSAQEAVENGFADEVMTF-EAVASI--DSMMLPQAVIDDYYASRTKRKQEISNM 208

Query: 267 SISSLLEDTIPLM 279
            +    E+ +  +
Sbjct: 209 LLEIEKEEILQGL 221


>gi|317470420|ref|ZP_07929809.1| Clp protease [Anaerostipes sp. 3_2_56FAA]
 gi|316902100|gb|EFV24025.1| Clp protease [Anaerostipes sp. 3_2_56FAA]
          Length = 202

 Score = 40.8 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 61/186 (32%), Gaps = 28/186 (15%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +   D    + + ++SPGGS  AG AI+  ++ ++     I      +  A  
Sbjct: 44  IVAQMLFLEAQDPGRDIQLYINSPGGSVTAGFAIYDTMKYIQCDVATICVGLAASFGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L        +A   + +           ++     + +                      
Sbjct: 104 LAGGTQGKRMALPNAEIMIHQPAIHGNGIQGPASDIKI---------------------- 141

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231
                M D +  +     R+++E+     ++           +  EA K GLID V  + 
Sbjct: 142 -----MSDYMQKNKQRLNRILAENTGRSIEEIERDTDRDHFMSAEEALKYGLIDSVISKR 196

Query: 232 EVWQSL 237
           +  Q L
Sbjct: 197 QKKQHL 202


>gi|315221928|ref|ZP_07863839.1| Clp protease [Streptococcus anginosus F0211]
 gi|319939597|ref|ZP_08013956.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           anginosus 1_2_62CV]
 gi|315188894|gb|EFU22598.1| Clp protease [Streptococcus anginosus F0211]
 gi|319811186|gb|EFW07492.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           anginosus 1_2_62CV]
          Length = 196

 Score = 40.8 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 58/192 (30%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 27  IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYINTPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +  
Sbjct: 87  QTIVMGMAASMGTIIASSGAKGKRFMLPNAEYLIHQPMGGTGSGTQQTDMAIAAEHLL-- 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      + +   ++++++      +    ++   W +  
Sbjct: 145 --------------------------KTRNNLEKILADNSGKTIKQVHKDAERDYWMSAQ 178

Query: 217 EAKKVGLIDVVG 228
           E    G ID + 
Sbjct: 179 ETLDYGFIDEIM 190


>gi|302391290|ref|YP_003827110.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acetohalobium
           arabaticum DSM 5501]
 gi|302203367|gb|ADL12045.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acetohalobium
           arabaticum DSM 5501]
          Length = 199

 Score = 40.8 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 67/201 (33%), Gaps = 35/201 (17%)

Query: 35  SPHVARI--AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
              +  I   I  +I +   +I ++  +  +D    + + ++SPGGS  +  AI+  +Q 
Sbjct: 27  KDRIVFIGSPINDEIANL--VIAQLLFLEAEDPDKDIYIYINSPGGSVTSALAIYDTMQY 84

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           +K     I+     +A A  L S A     A   S +               ++      
Sbjct: 85  IKPDVSTISMGLAASAGALLLASGAEGKRYALPYSRIMIHQPAGGAEGRAADIE------ 138

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
                                   +    +         ++++    P +K     D   
Sbjct: 139 ------------------------IQAQEILDLRKILNNILADHTGQPLEKIEEDVDRDF 174

Query: 213 W-TGAEAKKVGLIDVVGGQEE 232
           + +  +AK+ G+ID V  ++E
Sbjct: 175 FMSSEDAKEYGIIDEVISRQE 195


>gi|322418659|ref|YP_004197882.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp.
           M18]
 gi|320125046|gb|ADW12606.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp.
           M18]
          Length = 199

 Score = 40.8 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 64/195 (32%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D+    +I ++  +  +D    + + ++SPGG   AG AI+  ++ +K   
Sbjct: 28  IIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMRYIKAPV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L         +   S +     L  +                   
Sbjct: 88  STICIGQAASMGAFLLSGGEKGKRFSLANSRIMIHQPLGGFQGQ---------------- 131

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            + +    +         L++E     ++K    ++   + +G 
Sbjct: 132 --------------ATDIHIHAKEILRMKDQLNELLAEHTGQSFEKVAADTERDYFMSGE 177

Query: 217 EAKKVGLIDVVGGQE 231
           EAK  G+ID +  + 
Sbjct: 178 EAKSYGIIDAIVTRN 192


>gi|13476994|ref|NP_108564.1| ATP-dependent Clp protease proteolytic subunit [Mesorhizobium loti
           MAFF303099]
 gi|18202642|sp|Q982V6|CLPP2_RHILO RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|14027757|dbj|BAB54350.1| ATP-dependent Clp proteinase [Mesorhizobium loti MAFF303099]
          Length = 209

 Score = 40.8 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 59/195 (30%), Gaps = 31/195 (15%)

Query: 40  RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G +ED    +   ++  +  ++    + + ++SPGG   +G AI+  +Q +K   
Sbjct: 37  IIFITGPVEDGMATLVCAQLLFLEAENPKKEINLYINSPGGVVTSGMAIYDTMQFIK--- 93

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                                     A ++L            +      +  +  + + 
Sbjct: 94  -------------------------PAVSTLCIGQAASMGSLLLTAGHKDMRFATPNARI 128

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
              +       + +      M D+V          V  +     +    L      T  E
Sbjct: 129 MVHQPSGGFQGQASDIERHAM-DIVKLKRRLNEVYVKHTGKSYEEIERTLDRDHFMTADE 187

Query: 218 AKKVGLIDVVGGQEE 232
           AK  GLID V    E
Sbjct: 188 AKDFGLIDKVISSRE 202


>gi|296165576|ref|ZP_06848102.1| enoyl-CoA hydratase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295899077|gb|EFG78557.1| enoyl-CoA hydratase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 522

 Score = 40.8 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
                +L      T  EA  +GLI  V   +E+      L  + +    +  +  K   +
Sbjct: 418 RQALRILLTNPTLTADEALDIGLITEVVDDDELLNRAEELAAELATLPNRALSATKRLVW 477

Query: 261 CDLKNLSISSLLEDTIPLMK----QTKVQGLWAV 290
             L +     L E+   + +       ++GL AV
Sbjct: 478 SGLGSSVEERLAEEARTVSELSGTADALEGLRAV 511


>gi|183601061|ref|ZP_02962554.1| hypothetical protein PROSTU_04684 [Providencia stuartii ATCC 25827]
 gi|188019401|gb|EDU57441.1| hypothetical protein PROSTU_04684 [Providencia stuartii ATCC 25827]
          Length = 206

 Score = 40.8 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIQLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +           S V     L  Y                   
Sbjct: 102 STICMGQACSMGSFLLAAGTKGKRFCLPNSRVMIHQPLGGYQGQ---------------- 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                            +Q+    +         L++       ++        R  +  
Sbjct: 146 --------------ATDIQIHAQEILKVKTRMNELMALHTGKSVEEINRDTERDRFLSAD 191

Query: 217 EAKKVGLIDVV 227
           EAK+ GL+D +
Sbjct: 192 EAKEYGLVDHI 202


>gi|52079942|ref|YP_078733.1| ATP-dependent Clp protease proteolytic subunit (class III
           heat-shock protein) [Bacillus licheniformis ATCC 14580]
 gi|52785314|ref|YP_091143.1| hypothetical protein BLi01550 [Bacillus licheniformis ATCC 14580]
 gi|52003153|gb|AAU23095.1| ATP-dependent Clp protease proteolytic subunit (class III
           heat-shock protein) [Bacillus licheniformis ATCC 14580]
 gi|52347816|gb|AAU40450.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 248

 Score = 40.8 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 85/275 (30%), Gaps = 45/275 (16%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSP 76
            W      N      I I  +I  +Q            E ++ +      +AL + ++SP
Sbjct: 7   FWEIKAAKNDAKTGEIYIYSEISSAQFWGDEVTTQTFKEDLDGLGE---VSALNIYINSP 63

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GGS + G +I+  I++   +  V   V  +AAS   +I+ + + I     +++       
Sbjct: 64  GGSVFEGNSIYNIIKRH--KAHVNVYVDGLAASIASVIAMSGDAIFMPANAMMMIHNPWT 121

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                   L K    +  ++                                   L    
Sbjct: 122 VAQGNAEELRKQADDMDRIRE----------------------------SLIEAYLGKAG 153

Query: 197 RNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYAL--GVDQSIRKIKDWN 253
             +  D+ + L D   W T  E  ++GL D +         +        ++  +     
Sbjct: 154 EKLNRDRLIELMDAETWLTAQECLELGLCDSIEAPSAAVAKVDTQLFAKYRNTPESLLNQ 213

Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288
             ++    + + L    L+ +    + + +  G+ 
Sbjct: 214 TKEDEKQAEKERLFREQLIAEAQTNLLKLQNGGII 248


>gi|222100633|ref|YP_002535201.1| periplasmic serine protease [Thermotoga neapolitana DSM 4359]
 gi|221573023|gb|ACM23835.1| periplasmic serine protease [Thermotoga neapolitana DSM 4359]
          Length = 327

 Score = 40.4 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 4/150 (2%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+E++  I+    D     +I    +PGG   A E I RA++K    K  +   H  
Sbjct: 115 IEDSEEVLRAIKLTPEDMPIDLII---HTPGGLVLAAEQIARALKKH-KGKVTVFVPHYA 170

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            +    +   A  +++     L      +   P            +  V    +      
Sbjct: 171 MSGGTLIALAADEVVMDENAVLGPLDPQIGNMPAPSILAAVRKKDVNEVDDQTLILADIA 230

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
              +      + + + D       + ++E 
Sbjct: 231 EKAIRQIKEFVTEILKDKMPEEKAKEIAEK 260


>gi|268592036|ref|ZP_06126257.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Providencia
           rettgeri DSM 1131]
 gi|291312428|gb|EFE52881.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Providencia
           rettgeri DSM 1131]
          Length = 206

 Score = 40.4 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K   
Sbjct: 42  IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +           S V     L  Y      ++           
Sbjct: 102 STICMGQACSMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQASDIEIHAQE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +         L++       ++        R  +  
Sbjct: 156 ------------------------ILKVKSRMNELMALHTGKSIEEITRDTERDRFLSAN 191

Query: 217 EAKKVGLIDVV 227
           EAK+ GL+D +
Sbjct: 192 EAKEYGLVDQI 202


>gi|331090536|ref|ZP_08339389.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330405879|gb|EGG85407.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 193

 Score = 40.4 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 57/181 (31%), Gaps = 31/181 (17%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K            +
Sbjct: 39  VSASIIVAQLLHLEAEDPEKDIQLYINSPGGSVSAGLAIYDTMQYIKCDVSTTCIGMAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L   A     A   + +     L                                
Sbjct: 99  MGAFLLAGGAKGKRFALPNAEIMIHQPLGGAQGQ-------------------------- 132

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226
                  +Q+  + +  +      +++E     +++           +  EA++ GLID 
Sbjct: 133 ----ATEIQIAAEHILKTRQKLNEILAERTGKSFEQISADTERDNFMSAKEAEEYGLIDK 188

Query: 227 V 227
           V
Sbjct: 189 V 189


>gi|268680774|ref|YP_003305205.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618805|gb|ACZ13170.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 196

 Score = 40.4 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 53/190 (27%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  ++ ++  +  +D    + + ++SPGG   +G +I+  +  +K   
Sbjct: 30  IIMLSGEINDVVASSIVAQLLFLEAEDPEKDIYLYINSPGGVITSGFSIYDTMNYIKPDI 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +       A   + +     L                      
Sbjct: 90  STICIGQAASMGAFLLSAGTKGKRYALPNARIMIHQPLG--------------------- 128

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                      +               + +   +L                     +  E
Sbjct: 129 GAQGQATDIEIQAKEILRMKQVLNEILAKNCNQKL--------PKIIKDTERDFFMSAEE 180

Query: 218 AKKVGLIDVV 227
           + + GLID V
Sbjct: 181 SCEYGLIDKV 190


>gi|170690196|ref|ZP_02881363.1| protein of unknown function DUF107 [Burkholderia graminis C4D1M]
 gi|170144631|gb|EDT12792.1| protein of unknown function DUF107 [Burkholderia graminis C4D1M]
          Length = 551

 Score = 40.4 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 66/248 (26%), Gaps = 33/248 (13%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82
            S  +        V  I + G I    +  ++  ++R + D  A   ++ L +PGG   +
Sbjct: 38  VSGQNAAAQALNSVVVIPVSGAIGPASADFIVRSLQRAA-DSHAQLAVLQLDTPGGLDTS 96

Query: 83  GEAIFRAI---------------QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
              I +AI                +  +    I     +AA A      A+  I      
Sbjct: 97  MRQIIKAILGSPVPVATFIAPSGARAASAGTYIVYASHIAAMAPGTNLGAATPIQMGIGG 156

Query: 128 LVGSIG------------VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
                                  P           S     ++   A     + +     
Sbjct: 157 TEPPGDGTPRLPGTGDRAPQAPAPGGSASGVGAASSASGASATTSPASTRSPTTLPLDTQ 216

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
                        ++R +++ R    D     + +    T A+A    ++D      +V 
Sbjct: 217 STELRKQVHDAAAYIRGLAQMRGRNADWAERAVREAVSLTAADALAQHVVD--LNARDVP 274

Query: 235 QSLYALGV 242
             L  L  
Sbjct: 275 DLLRQLDG 282


>gi|57234158|ref|YP_181801.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Dehalococcoides ethenogenes 195]
 gi|57224606|gb|AAW39663.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Dehalococcoides ethenogenes 195]
          Length = 242

 Score = 40.4 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 60/192 (31%), Gaps = 37/192 (19%)

Query: 41  IAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           + + G+I D      E+  ++ +         + + ++SPGG  +A   I+  +    + 
Sbjct: 23  LYLDGEISDETWFGDEVTPQLFKDELSSGDGNITLWINSPGGDVFAAAQIYNMLMDYPHD 82

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
             V      +AASA  +I+ A   +  +  +++                        ++ 
Sbjct: 83  VTVKI--DALAASAASVIAMAGTKVCMSPVAMMMIHNPA------------------TIA 122

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215
               +        +N     +M      S             +   K   L D   W   
Sbjct: 123 IGDTEEMQKAIDMLNEVKESIMNAYEIKS------------GLSRHKISQLMDAETWMNA 170

Query: 216 AEAKKVGLIDVV 227
            EA K+G  D +
Sbjct: 171 KEAVKLGFADEI 182


>gi|255080968|ref|XP_002504050.1| predicted protein [Micromonas sp. RCC299]
 gi|226519317|gb|ACO65308.1| predicted protein [Micromonas sp. RCC299]
          Length = 720

 Score = 40.4 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 68/220 (30%), Gaps = 34/220 (15%)

Query: 36  PHVARIAIRGQ------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
             VA I++         I   + +  +++    D    A++++ S   G    G  I + 
Sbjct: 5   DGVALISMSNPPVNALAIPVLEGIEAQVKAAQADSGVRAIVITGS--RGKFSGGFDITQL 62

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
             + + +                         ++    ++ SI      P V    +   
Sbjct: 63  KARTEGK---------------------PVRNMSDFNGVLNSIVEAGPKPTVAAIENLAL 101

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
                V  +      +P +++    +Q+             RLV            ++  
Sbjct: 102 GGGLEVAMACNARVATPKAQLGLPELQLGVIPGFGGTQRLPRLV-----GLPKALEMMLK 156

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
            +     EA K+GL+D +   +++      L  D + ++I
Sbjct: 157 SKPVKAEEALKLGLVDAIVPADQLIAKATQLAKDIADKRI 196


>gi|109899441|ref|YP_662696.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Pseudoalteromonas atlantica T6c]
 gi|123064308|sp|Q15R46|CLPP_PSEA6 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|109701722|gb|ABG41642.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Pseudoalteromonas atlantica T6c]
          Length = 212

 Score = 40.4 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG AI+  +  +K   
Sbjct: 38  VIFMVGQVEDHMANLIVAQMLFLEAENPEKDIFLYINSPGGSVTAGMAIYDTMNFIKPDV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         + V     L  +       +     I S+  
Sbjct: 98  STVCIGQAASMGAFLLSGGAKGKRYCLPNARVMIHQPLGGFQGQASDFEIHAKEILSI-- 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            RL++      YDK           +  
Sbjct: 156 ----------------------------KEKMNRLMAAHTGQDYDKVARDTDRDNFLSAQ 187

Query: 217 EAKKVGLIDVV 227
           E+   GL+D V
Sbjct: 188 ESVDYGLVDQV 198


>gi|225019943|ref|ZP_03709135.1| hypothetical protein CLOSTMETH_03897 [Clostridium methylpentosum
           DSM 5476]
 gi|224947307|gb|EEG28516.1| hypothetical protein CLOSTMETH_03897 [Clostridium methylpentosum
           DSM 5476]
          Length = 188

 Score = 40.4 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  ++ D+    ++ ++  +   D    + + ++SPGGS  +G AI+  +  +K+  
Sbjct: 24  IIMLSDEVNDATASLVVAQLLYLEAQDPEKDIQLYINSPGGSITSGMAIYDTMNYIKSDV 83

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A    +A   S +                            
Sbjct: 84  STICIGMAASMGAFLLSAGAKGKRLALPNSEIMIHQPSGGAQGQ---------------- 127

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            + +  + +        ++++++   P +K           +  
Sbjct: 128 --------------ATDINIQAERIIKMKKQLNQMLADATGQPLEKIERDTERDNFMSAQ 173

Query: 217 EAKKVGLIDVV 227
           EA + GL+D V
Sbjct: 174 EACEYGLVDKV 184


>gi|113970830|ref|YP_734623.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
           MR-4]
 gi|123029527|sp|Q0HHA1|CLPP_SHESM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|113885514|gb|ABI39566.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
           MR-4]
          Length = 202

 Score = 40.4 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 50/178 (28%), Gaps = 31/178 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +     + + ++SPGGS  AG AI+  +Q +K     +      +  A  
Sbjct: 52  IVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFL 111

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L             S V     L      +     + +  + +     K           
Sbjct: 112 LAGGEKGKRFCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILGIKHKLNLML------ 162

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229
                                SE    P +            +  +A + GL+D V  
Sbjct: 163 ---------------------SEHTGQPLELIERDTDRDNFMSATQAVEYGLVDAVMT 199


>gi|332981667|ref|YP_004463108.1| hypothetical protein Mahau_1088 [Mahella australiensis 50-1 BON]
 gi|332699345|gb|AEE96286.1| protein of unknown function DUF107 [Mahella australiensis 50-1 BON]
          Length = 432

 Score = 40.4 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 63/130 (48%), Gaps = 5/130 (3%)

Query: 8   IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERISRDDS 65
           +K   ++ + + +     S           V  I  +G++  +    +   IE+  + + 
Sbjct: 1   MKKLLIITAYMVILSAVISTPLSALAADNIVYVIPAKGEVTPAMAGFVSSSIEQAGK-EG 59

Query: 66  ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
           A+A+I+ + +PGG   +   I  AI  + +  PVI+ V++ A SAG LI+ A++ +V A 
Sbjct: 60  ASAIILDIDTPGGYVQSAMDIKDAI--MDSPVPVISYVNKRALSAGVLIAIAADHLVMAP 117

Query: 126 TSLVGSIGVL 135
            S +G+   +
Sbjct: 118 ASHMGAAETI 127


>gi|307151649|ref|YP_003887033.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 7822]
 gi|306981877|gb|ADN13758.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 7822]
          Length = 228

 Score = 40.4 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 69/197 (35%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + +   I+D  +  ++ ++  +  +D    + + ++SPGGS YAG AI+  +Q+++   
Sbjct: 52  IVFLGTAIDDNVADSIVAQLLYLDAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDV 111

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L        +A  ++ +     +         +D     I  +  
Sbjct: 112 VTICFGLAASMGAFLLSGGTKGKRMALPSARIMIHQPIGGAQGQAVEIDIQAKEILYI-- 169

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216
                                             L++E    PY++    ++   +    
Sbjct: 170 ----------------------------KQRLNSLLAEHTGQPYERIAEDTERDFYMSVH 201

Query: 217 EAKKVGLIDVVGGQEEV 233
           +AK  GLID V  + E+
Sbjct: 202 DAKDYGLIDQVISRSEL 218


>gi|224534182|ref|ZP_03674761.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           spielmanii A14S]
 gi|224514543|gb|EEF84858.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           spielmanii A14S]
          Length = 197

 Score = 40.4 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  +I ++  +  +DS   + + L+SPGGS  AG AI+  +Q +K   
Sbjct: 33  IIFLSGEINDLKADTVIAQLLFLESEDSNKDIYLYLNSPGGSITAGLAIYDTMQYIKPDV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             I      +  A  L + A     +   S +       
Sbjct: 93  RTICIGQAASMGAFLLAAGAKGKRESLTYSRIMIHQPWG 131


>gi|296123571|ref|YP_003631349.1| endopeptidase Clp [Planctomyces limnophilus DSM 3776]
 gi|296015911|gb|ADG69150.1| Endopeptidase Clp [Planctomyces limnophilus DSM 3776]
          Length = 227

 Score = 40.4 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/186 (12%), Positives = 53/186 (28%), Gaps = 8/186 (4%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D+    ++ ++  +  ++    +   ++SPGGS  A  AI+  +Q ++   
Sbjct: 37  IIFLDGPIHDASANLIVMKLLFLQAENRHQDIHFYVNSPGGSVTATMAIYDTMQFLQCDI 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL----FQYPYVKPFLDKLGVSIK 153
                    +  A  L               V           Q   ++     +  + +
Sbjct: 97  ATYCVGLAASGGAIVLAGGTKGKRYCLPHGKVMIHQPYGEVGGQVSDIEIQARDILDTRR 156

Query: 154 SVKSSPMKAEPSPFSEV-NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
            +          P   +          +   +  +  V  V  +   P      +   + 
Sbjct: 157 VLNEILAHHCNQPIEIIARDTERDYYMNAYQAKDYGIVDEVLSNPKKPPVGIP-IPANKP 215

Query: 213 WTGAEA 218
             G  A
Sbjct: 216 VEGESA 221


>gi|110456699|gb|ABG74808.1| ATP-dependent protease catalytic subunit [Jasminum abyssinicum]
          Length = 259

 Score = 40.4 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 29/188 (15%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           + E+I  +  ++  D    L   ++SPGG+ + G AI+ A++ +      I      + +
Sbjct: 77  ANEIIAAMLYLNMQDPLQRLYFFINSPGGAVHDGLAIYDAMKYIDQEIHTICYGQAASMA 136

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           +  L S A     A   S+     V+   P + P   +L   ++                
Sbjct: 137 SVLLASGAKGHRGAYPHSM-----VMMHQPALAPTRGRLQRLVRERNC------------ 179

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV-G 228
                      +           V E+R         L      +  EA++ G+ID + G
Sbjct: 180 -----------LNILKERIIDIYVCETRKDRLVIERTLERDHYMSPIEAREYGIIDKIYG 228

Query: 229 GQEEVWQS 236
           G  +  + 
Sbjct: 229 GIFDKIEE 236


>gi|297531315|ref|YP_003672590.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacillus
           sp. C56-T3]
 gi|297254567|gb|ADI28013.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           sp. C56-T3]
          Length = 196

 Score = 40.4 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 64/196 (32%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + +   I+D  +  ++ ++  ++ +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IVFLGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIYDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   S +     L         ++           
Sbjct: 89  STICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEIAAKR------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +        R++SE+   P +            T  
Sbjct: 143 ------------------------ILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAQ 178

Query: 217 EAKKVGLIDVVGGQEE 232
           +A + G+ID V  + +
Sbjct: 179 KAMEYGIIDRVLTRAD 194


>gi|295114931|emb|CBL35778.1| Protease subunit of ATP-dependent Clp proteases [butyrate-producing
           bacterium SM4/1]
          Length = 246

 Score = 40.4 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/194 (9%), Positives = 64/194 (32%), Gaps = 7/194 (3%)

Query: 41  IAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           + + G I +      ++  ++ +      +  + V ++SPGG   A   I+  +   K  
Sbjct: 22  LFLNGTIAEESWFDDDVTPQLFKEELMAGSGNITVWINSPGGDCVAAAQIYNMLMDYKGD 81

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL--FQYPYVKPFLDKLGVSIKS 154
             V  +    +A++   ++    +I      ++ +   +       ++  ++ L     S
Sbjct: 82  VTVKIDGIAASAASVIAMAGTQVLISPVGMMMIHNPATIAWGDTAEMRKAIEMLASVKDS 141

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
           + ++         ++++             +  +        R    +     +   +++
Sbjct: 142 IINAYEIKTGLSRAKLSHLMDAETWMDAHKAVEFGFADGILGRTDLPEDMEPPAVTMLYS 201

Query: 215 GAEAKKVGLIDVVG 228
              A    L+D + 
Sbjct: 202 -KAAMVNSLMDKIA 214


>gi|76787240|ref|YP_329374.1| prophage LambdaSa04, ClpP endopeptidase [Streptococcus agalactiae
           A909]
 gi|76562297|gb|ABA44881.1| prophage LambdaSa04, ClpP endopeptidase (S14) family, non-peptidase
           homologue, putative [Streptococcus agalactiae A909]
          Length = 232

 Score = 40.4 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 62/205 (30%), Gaps = 37/205 (18%)

Query: 33  DNSPHVARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
            +   V  + I GQI D      E+  ++ +         + + ++SPGG  +A   I+ 
Sbjct: 8   TDEGEVRTLRIEGQIADETWFGDEVTPQLFKNDLTSETGDITLWINSPGGDVFAAAQIYN 67

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
            +   +    VI     +AASA  +I+ A   +  +  +++                   
Sbjct: 68  MLMDYQGDVHVII--DGLAASAASVIAMAGTTVSMSPVAMMMIHN--------------- 110

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
                +      K        +                   +        +   K   L 
Sbjct: 111 ---PWTFAQGEAKDMAKVIEMLGE------------IKESIINAYELRTGLSRTKISHLM 155

Query: 209 DGRIW-TGAEAKKVGLIDVVGGQEE 232
           D   W    +A ++G  D V  ++E
Sbjct: 156 DSESWFNAKKAVELGFADKVLFEKE 180


>gi|56421597|ref|YP_148915.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus
           kaustophilus HTA426]
 gi|261420500|ref|YP_003254182.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus sp.
           Y412MC61]
 gi|319768169|ref|YP_004133670.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacillus
           sp. Y412MC52]
 gi|67460172|sp|Q5KVD9|CLPP_GEOKA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56381439|dbj|BAD77347.1| ATP-dependent Clp protease proteolytic subunit (class III
           heat-shock protein) [Geobacillus kaustophilus HTA426]
 gi|261376957|gb|ACX79700.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           sp. Y412MC61]
 gi|317113035|gb|ADU95527.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           sp. Y412MC52]
          Length = 196

 Score = 40.4 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 64/196 (32%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + +   I+D  +  ++ ++  ++ +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IVFLGSPIDDQVANSIVSQLLFLAAEDPDKDISLYINSPGGSITAGLAIYDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   S +     L         ++           
Sbjct: 89  STICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEIAAKR------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +        R++SE+   P +            T  
Sbjct: 143 ------------------------ILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAQ 178

Query: 217 EAKKVGLIDVVGGQEE 232
           +A + G+ID V  + +
Sbjct: 179 KAMEYGIIDRVLTRAD 194


>gi|319789118|ref|YP_004150751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermovibrio
           ammonificans HB-1]
 gi|317113620|gb|ADU96110.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermovibrio
           ammonificans HB-1]
          Length = 200

 Score = 40.4 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 53/179 (29%), Gaps = 29/179 (16%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGG   AG AI+  +Q +K     I      +  A  
Sbjct: 49  IVAQLLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMQYIKPDVVTICMGQAASMGAVL 108

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     A   + +     L  +      ++     I                    
Sbjct: 109 LAAGAKGKRFALPHARIMIHQPLGGFQGQATDIEIHAKEI-------------------- 148

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
                    +         L   +R                +  EAK+ GLID V  + 
Sbjct: 149 ---------LRLKRMLNEILAKHTRQPVEKVEQDTERDYFMSAEEAKEYGLIDKVLTRR 198


>gi|218672848|ref|ZP_03522517.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           GR56]
          Length = 194

 Score = 40.4 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 63/196 (32%), Gaps = 38/196 (19%)

Query: 41  IAIRGQIED--SQELIERI--ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           I I G I    +Q++  ++     + D+      + ++SPGG   +G++I   ++ +K +
Sbjct: 29  IFIYGPINQELAQKVCSQLVALAAASDEDIR---IYVNSPGGHVESGDSIHDMVKFIKPK 85

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
             +I      +A A   ++      +    +             +   ++          
Sbjct: 86  VWMIGTGWVASAGALIYVAAPKERRICLPNTRFLLHQPSGGTRGMASDIEI--------- 136

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215
                                    +        ++++ +   P DK    +D   W + 
Sbjct: 137 ---------------------QAREIIKMNERLNKIMAAATGQPLDKIAKDTDRDYWLSA 175

Query: 216 AEAKKVGLIDVVGGQE 231
            EAK  GL+  +   +
Sbjct: 176 EEAKDYGLVSRIVTSQ 191


>gi|86358671|ref|YP_470563.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli CFN
           42]
 gi|116243121|sp|Q2K5Q0|CLPP3_RHIEC RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|86282773|gb|ABC91836.1| endopeptidase Clp, subunit 3 protein [Rhizobium etli CFN 42]
          Length = 194

 Score = 40.4 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 65/196 (33%), Gaps = 38/196 (19%)

Query: 41  IAIRGQIED--SQELIERI--ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           I I G I    +Q++  ++     + D+      + ++SPGG   +G++I   ++ +K +
Sbjct: 29  IFIYGPINQELAQKVCSQLVALAAASDEDIR---IYVNSPGGHVESGDSIHDMVKFIKPK 85

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
             +I      +A A   ++      +    +             +   ++          
Sbjct: 86  VWMIGTGWVASAGALIYVAAPRERRLCLPNTRFLLHQPSGGTRGMASDIE---------- 135

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215
                               +    +        ++++E+   P +K    +D   W + 
Sbjct: 136 --------------------IQAREIIKMNERLNKIMAEATGQPLEKIAKDTDRDYWLSA 175

Query: 216 AEAKKVGLIDVVGGQE 231
            EAK  GL+  +   +
Sbjct: 176 EEAKDYGLVSRIVTSQ 191


>gi|5726289|gb|AAD48398.1|AF127035_1 calcium-activated chloride channel protein 2 [Homo sapiens]
          Length = 917

 Score = 40.4 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 73/265 (27%), Gaps = 21/265 (7%)

Query: 46  QIEDSQELIERIER-----------ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
            I +S++    I             +        L++  S   G       + +A +   
Sbjct: 275 VISNSEDFKNTIPMVTPPPPPVFSLLKIRQRIVCLVLDKSGSMGGKDRLNRMNQAAKHFL 334

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP-YVKPFLDKLGVSIK 153
            +         M             I + +       +  L  YP         +  + +
Sbjct: 335 LQTVENGSWVGMVHFDSTATIVNKLIQIKSSDERNTLMAGLPTYPLGGTSICSGIKYAFQ 394

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW--FVRLVSESRNIPYDKTL--VLSD 209
            +     + + S    +           +D        V  ++  R           ++ 
Sbjct: 395 VIGELHSQLDGSEVLLLTDGEDNTASSCIDEVKQSGAIVHFIALGRAADEAVIEMSKITG 454

Query: 210 GR-IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
           G   +   EA+  GLID  G        L    +    + +       N W  D   +  
Sbjct: 455 GSHFYVSDEAQNNGLIDAFGALTSGNTDLSQKSLQLESKGL---TLNSNAWMNDTVIID- 510

Query: 269 SSLLEDTIPLMKQTKVQGLWAVWNP 293
           S++ +DT  L+    +    ++W+P
Sbjct: 511 STVGKDTFFLITWNSLPPSISLWDP 535


>gi|317132778|ref|YP_004092092.1| peptidase S14 ClpP [Ethanoligenens harbinense YUAN-3]
 gi|315470757|gb|ADU27361.1| peptidase S14 ClpP [Ethanoligenens harbinense YUAN-3]
          Length = 248

 Score = 40.4 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 78/255 (30%), Gaps = 37/255 (14%)

Query: 41  IAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           + + G+I D      E+  ++ +   +     + + ++SPGG  +A   I+  +      
Sbjct: 23  LYLDGEISDETWYGDEVTPQVFKDELNSGKGNITLWINSPGGDVFAAAQIYNMLMDYPYD 82

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
             V      +AASA  +I+ A   +  +  +++                        ++ 
Sbjct: 83  VTVKI--DALAASAASVIAMAGTKVCMSPVAMLMVHNPA------------------TIA 122

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215
               +        ++     +M      S             +  +K   L D   W   
Sbjct: 123 IGDSEEMQKAIDMLSEVKESIMNAYEIKS------------GLSRNKISKLMDAETWMNA 170

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
            EAKK+G  D +   +    S      +    +I+     K      L  L      E  
Sbjct: 171 KEAKKLGFADEILFADGTEPSGDNDSTEHDDGEIEMLFSRKAVTDSLLSKLIPKRKPEIK 230

Query: 276 IPLMKQTKVQGLWAV 290
              +K   ++   ++
Sbjct: 231 TQTIKVADLEKRLSL 245


>gi|299142816|ref|ZP_07035944.1| ClpP protease [Prevotella oris C735]
 gi|298575684|gb|EFI47562.1| ClpP protease [Prevotella oris C735]
          Length = 365

 Score = 40.4 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/187 (11%), Positives = 61/187 (32%), Gaps = 21/187 (11%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           + +++SSPGG   AG  I++ I+             ++      + + A+  +     S+
Sbjct: 41  VDIAVSSPGGYVDAGLEIYQMIKDH----------GKVNIHILGMTASAATFLTMGAKSV 90

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
               G L         + +   + K    + +        ++N     +           
Sbjct: 91  DMVDGSLMLIHNASTAVREWQSANKEQLDALIAKYQKERDDLNTIDKVIASLYA------ 144

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                 ++     +    +      + ++A + GLID +   ++  +   ++    +   
Sbjct: 145 -----KKNGKSVDECMDKMQKAAWLSPSDALEFGLIDKIREDDDAARKANSIRNHFNNNI 199

Query: 249 IKDWNPP 255
            +++  P
Sbjct: 200 FQEFGLP 206


>gi|239834344|ref|ZP_04682672.1| Fatty acid oxidation complex subunit alpha [Ochrobactrum
           intermedium LMG 3301]
 gi|239822407|gb|EEQ93976.1| Fatty acid oxidation complex subunit alpha [Ochrobactrum
           intermedium LMG 3301]
          Length = 759

 Score = 40.4 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 73/245 (29%), Gaps = 22/245 (8%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVIT 101
            +E  QEL   I+  + D+    ++++    S  G A     E +F+  QK K +     
Sbjct: 52  TVEAMQELNAIIDATTADEKVKGVVITSGKESFSGGADLTMLEGMFKEFQKQKAKDHQAA 111

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                                        +   +     +             +      
Sbjct: 112 VQALFDNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARV 159

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221
           A  +P  ++    V++             RL ++      D   +++ G   T   AK +
Sbjct: 160 ASDAPGVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAM 214

Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
           GL+  +   +++ ++   L     ++ ++ W+             +  + L      + +
Sbjct: 215 GLVTEIAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILR 273

Query: 282 TKVQG 286
            +  G
Sbjct: 274 RETSG 278


>gi|186685824|ref|YP_001869020.1| hypothetical protein Npun_R5779 [Nostoc punctiforme PCC 73102]
 gi|186468276|gb|ACC84077.1| protein of unknown function DUF114 [Nostoc punctiforme PCC 73102]
          Length = 297

 Score = 40.4 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 72/183 (39%), Gaps = 14/183 (7%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            IEDS++++  I     D     ++    +PGG   A E I RA+ + + +  V   V  
Sbjct: 68  TIEDSEQILRAIRLTPPDVPIDLIL---HTPGGLVLATEQIARALIRHQAK--VTVFVPH 122

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
            A S G +++ AS+ I+    +++G +            L  +     S     +  +  
Sbjct: 123 YAMSGGTMLALASDEIIMDANAVLGPVDPQLGNYPAASILKVIEDKPIS----EIDDQTL 178

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-----WTGAEAKK 220
             ++++ KA+  +Q  V +     +                L+ GR+      T  EA +
Sbjct: 179 IMADLSRKAIGQVQRFVRTLLKDSIPKQKVLPENIESIIEALTTGRVTHDYPITIEEATE 238

Query: 221 VGL 223
           +GL
Sbjct: 239 MGL 241


>gi|152989915|ref|YP_001355637.1| ATP-dependent Clp protease proteolytic subunit [Nitratiruptor sp.
           SB155-2]
 gi|166201830|sp|A6Q1C1|CLPP_NITSB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|151421776|dbj|BAF69280.1| ATP-dependent Clp protease, proteolytic subunit [Nitratiruptor sp.
           SB155-2]
          Length = 196

 Score = 40.4 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D+    ++ ++  +  +D    + + ++SPGG   +G +I+  +  +K   
Sbjct: 30  IIMLSGEINDAVASSIVAQLLFLEAEDPDKDIYLYINSPGGVITSGMSIYDTMNYIKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S       A   + +     L         ++           
Sbjct: 90  STICIGQAASMGAFLLSSGTKGKRYALPHARIMIHQPLGGAQGQATDIE----------- 138

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                              +    +         +++E+      K    ++   + +  
Sbjct: 139 -------------------IQAKEILRLKKILNEILAENTGQSVKKIAKDTERDFFMSSE 179

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 180 EAKEYGLIDQV 190


>gi|149376712|ref|ZP_01894470.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter
           algicola DG893]
 gi|149358951|gb|EDM47417.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter
           algicola DG893]
          Length = 227

 Score = 40.4 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 59  VIFLVGPVEDHMANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 118

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A         S V     L  Y      ++     I  ++ 
Sbjct: 119 ATLCVGQAASMGAFLLAGGAEGKRACLPNSRVMIHQPLGGYQGQATDIEIHTREILKIRH 178

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
                                             +++       D     +D   +    
Sbjct: 179 ------------------------------TLNSILAHHTGQKLDTIAKDTDRDNFMDPQ 208

Query: 217 EAKKVGLIDVVGG 229
           +AK  GLID +  
Sbjct: 209 QAKDYGLIDSILD 221


>gi|134046687|ref|YP_001098172.1| hypothetical protein MmarC5_1661 [Methanococcus maripaludis C5]
 gi|132664312|gb|ABO35958.1| protein of unknown function DUF114 [Methanococcus maripaludis C5]
          Length = 274

 Score = 40.4 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            IEDS+E++  I     D     ++    +PGG   A E I  A+++ K +  VI   + 
Sbjct: 66  TIEDSEEILRAIRMTPEDMPIDLIL---HTPGGLVLASEQIATALKEHKAKTTVIIPHYA 122

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           M+   G LI+ A++ I+  + +++G +            ++ +    
Sbjct: 123 MSG--GSLIALAADEIIIDKNAVMGPVDPQVGQYPAASIINAINTKY 167


>gi|323439020|gb|EGA96753.1| phiSLT ORF257-like protein, putative prophage protease
           [Staphylococcus aureus O11]
          Length = 255

 Score = 40.4 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 38/221 (17%)

Query: 41  IAIRGQIEDSQELIERI------ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           I I G I   +     +       ++      + + V ++S GGS + G AI+  ++   
Sbjct: 18  IFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHP 77

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
            +      V  +AAS   +I+ + + I   + S +                         
Sbjct: 78  AKIN--IYVDALAASIASVIAMSGDTIFMHKNSFLMIHN--------------------- 114

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213
                             +  +    +  +        + +++++  +    + D   W 
Sbjct: 115 --------SWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWL 166

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           T  EA   GLID + G  E+  S+      +     +D   
Sbjct: 167 TAEEALSFGLIDEILGANEIAASISKEQYKRFENVPEDLKK 207


>gi|264679702|ref|YP_003279609.1| peptidase S14, ClpP [Comamonas testosteroni CNB-2]
 gi|262210215|gb|ACY34313.1| peptidase S14, ClpP [Comamonas testosteroni CNB-2]
          Length = 697

 Score = 40.4 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 62/219 (28%), Gaps = 46/219 (21%)

Query: 41  IAIRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
           I I G I          ++  +  +  +       A+ V ++S GGS   G AI+ A+++
Sbjct: 30  ILIYGDIGESWWDETTSAKSFLAELSAL----DVDAITVRINSLGGSVPDGIAIYNAMKR 85

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            K    V                     +     S+   I +      +      +  + 
Sbjct: 86  HKATITV--------------------EVDGIAYSIASLIAMGGDTVNMASNALMMIHAP 125

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR- 211
            +  +           +++            +  +      +           +L+DG+ 
Sbjct: 126 WTYAAGNSAELRELADQLD------------TWANAMSTSYAAKTGDQAGALALLTDGKD 173

Query: 212 -IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
             +T  EA  +  ID +     +  S          R +
Sbjct: 174 HFFTAEEALALKFIDAITDSNPIAASAARDMPISRYRSL 212


>gi|167753873|ref|ZP_02426000.1| hypothetical protein ALIPUT_02158 [Alistipes putredinis DSM 17216]
 gi|167658498|gb|EDS02628.1| hypothetical protein ALIPUT_02158 [Alistipes putredinis DSM 17216]
          Length = 335

 Score = 40.4 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 61/219 (27%), Gaps = 41/219 (18%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQI---------------EDSQELIERIERISRDDSATA 68
               S     N      + I G I                  ++  + ++R+   D A  
Sbjct: 41  LSMQSDIQITNRNDTCFVDIEGVIGVPEEWQFDQPSSRVATYEKFRDSLDRLREID-APE 99

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           ++V++ S GG       I+ A+  +          +  +A+     + +      +  +L
Sbjct: 100 IVVNIRSTGGDVNDALLIYEALSSLDGHIVTRCYGYTASAATVIAQAASEGCREISAHAL 159

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
                 +         L                       + + +  ++       +   
Sbjct: 160 YLIHNSICTAEGNAEEL---------------ATRIDLLRKTDARLAEVYAARSGRTPEE 204

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
           F  L++E+             GR  +  EA   GL+D +
Sbjct: 205 FTLLMAENNG----------SGRWLSPQEALAAGLVDRI 233


>gi|51598863|ref|YP_073051.1| ATP-dependent Clp protease proteolytic subunit [Borrelia garinii
           PBi]
 gi|67460252|sp|Q660R2|CLPP_BORGA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|51573434|gb|AAU07459.1| ATP-dependent Clp protease proteolytic component [Borrelia garinii
           PBi]
          Length = 194

 Score = 40.4 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  +I ++  +  +DS   + + L+SPGGS  AG AI+  +Q +K   
Sbjct: 30  IIFLSGEINDLKADTVIAQLLFLESEDSNKDIYLYLNSPGGSITAGLAIYDTMQYIKPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             I      +  A  L   A     +   S +       
Sbjct: 90  RTICIGQAASMGAFLLAGGAKGKRESLAYSRIMIHQPWG 128


>gi|27382379|ref|NP_773908.1| enoyl-CoA hydratase [Bradyrhizobium japonicum USDA 110]
 gi|27355550|dbj|BAC52533.1| blr7268 [Bradyrhizobium japonicum USDA 110]
          Length = 326

 Score = 40.4 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 74/267 (27%), Gaps = 43/267 (16%)

Query: 31  VEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAY 81
           VE   P +AR+ +     D++         +L    +   +DD+   +I++ + P  S+ 
Sbjct: 51  VERPEPAIARVVMNRP--DARNAQNLQMTYDLNAAFDAAVQDDTVKVIILAGNGPHFSSG 108

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                          K           + G      ++   A E  +   I   ++    
Sbjct: 109 H--------DLRPGGKNEAGVDFPPIGNWGGFAEANAHGRFAREQEIYLQITRRWRNLAK 160

Query: 142 KPFLD----------KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191
               +           L  +   + +S       P   +               +     
Sbjct: 161 PVIAEVHGKCIAGGLMLAWACDLIVASDDAQFCDPVVAM--------GVCGVEWFVHPWE 212

Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251
           L       P      L     W+  EA ++G+++ V  + E+   +  L    + +    
Sbjct: 213 L------GPRKAKEFLFTADSWSAQEAHQLGMVNQVVPRAELSSRVLELARRIASKPSFA 266

Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPL 278
               K      +  +   + ++    L
Sbjct: 267 LKLTKEAVNRSVDVMGQPAAIDQAFAL 293


>gi|254444482|ref|ZP_05057958.1| Clp protease [Verrucomicrobiae bacterium DG1235]
 gi|198258790|gb|EDY83098.1| Clp protease [Verrucomicrobiae bacterium DG1235]
          Length = 192

 Score = 40.4 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 62/180 (34%), Gaps = 29/180 (16%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
            ++++ E++  +  D     +   +++PGGS  AG AI+  I+ + +   VI  V  +AA
Sbjct: 37  SAKDVTEKLFYLEADAPGKDITFYINTPGGSVTAGLAIYDTIKLISSE--VIVVVTGLAA 94

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
           S G ++  A          L     VL   P +        V I        K       
Sbjct: 95  SMGSILLSAPKKG---NRLLYPHAKVLIHQPLIGGQFQGPAVDIHIFAQDMEKTREELNR 151

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
            +                       +++   P DK    +D   + +  EA   GL D +
Sbjct: 152 IL-----------------------ADASGQPLDKIKEDTDRDFYMSAQEAIDYGLADRI 188


>gi|198431267|ref|XP_002129674.1| PREDICTED: similar to AGAP010130-PA [Ciona intestinalis]
          Length = 266

 Score = 40.4 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 61/218 (27%), Gaps = 28/218 (12%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
            LIE++  I +DDS   + +  S   G  +                         +    
Sbjct: 40  NLIEKLRDIEKDDSVKGV-LVTSKYNGETFISGL--------------------NSYDMH 78

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
                       A   +  ++    +        D +      V +   +          
Sbjct: 79  NQTDERLAKYWTAVQDIHFTMYSFGKPIVAAINGDAVAGGCAFVLTCDYRVMMKGKRTGL 138

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
           P+A   +       Y   ++ V  +R         L +G+I++  EA KVGL+D      
Sbjct: 139 PEAQFGIV--APFFYIDVMKSVIGNRQCEL----ALLEGKIFSTEEAAKVGLVDEAVDLN 192

Query: 232 EVW-QSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268
            V   ++  L     I +       +     D++    
Sbjct: 193 LVLPNAMKKLQHLVKIPQPAFKLTKQTLRQADIEKFIA 230


>gi|195578155|ref|XP_002078931.1| GD23683 [Drosophila simulans]
 gi|194190940|gb|EDX04516.1| GD23683 [Drosophila simulans]
          Length = 253

 Score = 40.4 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D  S  ++ ++  +  ++    + + ++SPGG   AG AI+  +Q VK   
Sbjct: 55  IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L + A  +  +   + +               +      I  +K 
Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKR 174

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                                   +   +          R                T  E
Sbjct: 175 --------------------QLTNIYVKHAKNTYEEMCGRMERD---------HFMTPEE 205

Query: 218 AKKVGLIDVV 227
           AK +G+ID V
Sbjct: 206 AKVLGIIDHV 215


>gi|195473623|ref|XP_002089092.1| GE18928 [Drosophila yakuba]
 gi|194175193|gb|EDW88804.1| GE18928 [Drosophila yakuba]
          Length = 253

 Score = 40.4 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D  S  ++ ++  +  ++    + + ++SPGG   AG AI+  +Q VK   
Sbjct: 55  IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L + A  +  +   + +               +      I  +K 
Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKR 174

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                                   +   +          R                T  E
Sbjct: 175 --------------------QLTNIYVKHAKNTYEEMCGRMERD---------HFMTPEE 205

Query: 218 AKKVGLIDVV 227
           AK +G+ID V
Sbjct: 206 AKVLGIIDHV 215


>gi|195339773|ref|XP_002036491.1| GM18225 [Drosophila sechellia]
 gi|116811667|emb|CAL26000.1| CG5045 [Drosophila simulans]
 gi|194130371|gb|EDW52414.1| GM18225 [Drosophila sechellia]
          Length = 253

 Score = 40.4 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D  S  ++ ++  +  ++    + + ++SPGG   AG AI+  +Q VK   
Sbjct: 55  IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L + A  +  +   + +               +      I  +K 
Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKR 174

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                                   +   +          R                T  E
Sbjct: 175 --------------------QLTNIYVKHAKNTYEEMCGRMERD---------HFMTPEE 205

Query: 218 AKKVGLIDVV 227
           AK +G+ID V
Sbjct: 206 AKVLGIIDHV 215


>gi|116811645|emb|CAL25989.1| CG5045 [Drosophila melanogaster]
 gi|116811649|emb|CAL25991.1| CG5045 [Drosophila melanogaster]
 gi|116811651|emb|CAL25992.1| CG5045 [Drosophila melanogaster]
 gi|116811653|emb|CAL25993.1| CG5045 [Drosophila melanogaster]
 gi|116811655|emb|CAL25994.1| CG5045 [Drosophila melanogaster]
 gi|116811657|emb|CAL25995.1| CG5045 [Drosophila melanogaster]
 gi|116811659|emb|CAL25996.1| CG5045 [Drosophila melanogaster]
 gi|116811661|emb|CAL25997.1| CG5045 [Drosophila melanogaster]
 gi|116811663|emb|CAL25998.1| CG5045 [Drosophila melanogaster]
 gi|116811665|emb|CAL25999.1| CG5045 [Drosophila melanogaster]
 gi|223966785|emb|CAR93129.1| CG5045-PA [Drosophila melanogaster]
 gi|223966787|emb|CAR93130.1| CG5045-PA [Drosophila melanogaster]
 gi|223966789|emb|CAR93131.1| CG5045-PA [Drosophila melanogaster]
 gi|223966791|emb|CAR93132.1| CG5045-PA [Drosophila melanogaster]
 gi|223966795|emb|CAR93134.1| CG5045-PA [Drosophila melanogaster]
 gi|223966797|emb|CAR93135.1| CG5045-PA [Drosophila melanogaster]
 gi|223966799|emb|CAR93136.1| CG5045-PA [Drosophila melanogaster]
 gi|223966801|emb|CAR93137.1| CG5045-PA [Drosophila melanogaster]
 gi|223966803|emb|CAR93138.1| CG5045-PA [Drosophila melanogaster]
          Length = 253

 Score = 40.4 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D  S  ++ ++  +  ++    + + ++SPGG   AG AI+  +Q VK   
Sbjct: 55  IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L + A  +  +   + +               +      I  +K 
Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKR 174

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                                   +   +          R                T  E
Sbjct: 175 --------------------QLTNIYVKHAKNTYEEMCGRMERD---------HFMTPEE 205

Query: 218 AKKVGLIDVV 227
           AK +G+ID V
Sbjct: 206 AKVLGIIDHV 215


>gi|253681101|ref|ZP_04861904.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum D str. 1873]
 gi|331270305|ref|YP_004396797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum BKT015925]
 gi|253562950|gb|EES92396.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum D str. 1873]
 gi|329126855|gb|AEB76800.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum BKT015925]
          Length = 195

 Score = 40.4 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 56/185 (30%), Gaps = 31/185 (16%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K     I      +
Sbjct: 39  VSASLVVAQLLFLEAEDPDKDIYLYINSPGGSITAGMAIYDTMQYIKPDVSTICIGMAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L + A     A   S +     L  +      +      I  +K    K      
Sbjct: 99  MGAFLLTAGAKGKRFALPNSEIMIHQPLGGFQGQATDIGIHANRILKIKDKLNKIL---- 154

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226
                                     SE    P +     +         EAK+ GLID 
Sbjct: 155 --------------------------SERTGKPLEVIKKDVERDNFMEADEAKEYGLIDD 188

Query: 227 VGGQE 231
           V    
Sbjct: 189 VITSR 193


>gi|320140399|gb|EFW32254.1| Clp protease [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320142757|gb|EFW34560.1| Clp protease [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 255

 Score = 40.4 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 38/221 (17%)

Query: 41  IAIRGQIEDSQELIERI------ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           I I G I   +     +       ++      + + V ++S GGS + G AI+  ++   
Sbjct: 18  IFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHP 77

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
            +      V  +AAS   +I+ + + I   + S +                         
Sbjct: 78  AKIN--IYVDALAASIASVIAMSGDTIFMHKNSFLMIHN--------------------- 114

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213
                             +  +    +  +        + +++++  +    + D   W 
Sbjct: 115 --------SWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWL 166

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           T  EA   GLID + G  E+  S+      +     +D   
Sbjct: 167 TAEEALSFGLIDEILGANEIAASISKEQYKRFENVPEDLKK 207


>gi|229150843|ref|ZP_04279055.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           m1550]
 gi|228632632|gb|EEK89249.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           m1550]
          Length = 254

 Score = 40.4 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 33/176 (18%)

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116
           I +   D +   L+VS++SPGG  + G  I+ A++       V      +AASA  +I+ 
Sbjct: 27  ISKALEDANGDDLVVSINSPGGYVHEGSEIYTALKNYPGHVEVQIVG--LAASAASVIAM 84

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
           A++ +  + T+ +                               +        +      
Sbjct: 85  AADKVRISPTAQIMIHNASM------------------WNGGDYRDMSKAAEMLKTTDRA 126

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-AEAKKVGLIDVVGGQE 231
           ++   V  S                ++ L +     W G  +A +   +D +   +
Sbjct: 127 IVNAYVIKS------------GKSEEELLNMMAEETWMGPQQALENNFVDEIMFMD 170


>gi|157370220|ref|YP_001478209.1| ATP-dependent Clp protease proteolytic subunit [Serratia
           proteamaculans 568]
 gi|157321984|gb|ABV41081.1| Endopeptidase Clp [Serratia proteamaculans 568]
          Length = 197

 Score = 40.4 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++ D  ++ L  ++  +  ++    + + ++SPGG   +G AI+  +  +    
Sbjct: 33  IVFLNGEVNDQIAEVLCAQLLFLEAENPEKPIHLYINSPGGVITSGFAIYDTMNYINAPV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                         + +   +   + +   + G  G     P     + +     +    
Sbjct: 93  --------------HTLCMGTARSMGSFLLMAGEAGHRMVLPNASLHVHQPLGGFQG--- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            + +  + +  + H  + L ++     Y++    L      +  
Sbjct: 136 -------------QASDILIHAEEMKRTKHSVITLYAKHCGRSYEEVERALDRDHFMSAD 182

Query: 217 EAKKVGLIDVV 227
           EA + GL+D V
Sbjct: 183 EAVEWGLVDKV 193


>gi|14520474|ref|NP_125949.1| hypothetical protein PAB2437 [Pyrococcus abyssi GE5]
 gi|5457689|emb|CAB49180.1| Hypothetical protein, DUF114 family [Pyrococcus abyssi GE5]
          Length = 280

 Score = 40.4 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 23/184 (12%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           +EDS+E++  I    +D     +I    +PGG   A   I +A++       VI   + M
Sbjct: 73  MEDSEEVLRAIRMAPKDKPIDLII---HTPGGLVLAATQIAKALKDHPAETRVIVPHYAM 129

Query: 107 AASAGYLISCASNIIVAAETSLVGSIG-VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           +   G LI+ A++ I+    +++G +   L QYP               +++   K    
Sbjct: 130 SG--GTLIALAADKIIMDPHAVLGPVDPQLGQYPAPS-----------IIRAVERKGPDK 176

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAK 219
              +    A    + +       +  L  +  +    +   +     WT        EA+
Sbjct: 177 VDDQTLILADVAEKAIKQVRDFIYDLLKDKYGDEKAKELAKILTEGRWTHDYPITVEEAR 236

Query: 220 KVGL 223
           K+GL
Sbjct: 237 KLGL 240


>gi|301154977|emb|CBW14440.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Haemophilus parainfluenzae T3T1]
          Length = 188

 Score = 40.4 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED     ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 24  VIFLSGEVEDRMANLIVAQLLFLESEDPKKDINIYINSPGGSVTAGMAIYDTMQFIKPDV 83

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L    +    A   + V     L  +                   
Sbjct: 84  RTLCIGQACSMGAFLLAGGTAGKRAALPNARVMIHQPLGGFRGQ---------------- 127

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            +Q+    +          ++       ++    +D   + +  
Sbjct: 128 --------------ASDIQIHAQEILKIKQTLNERLAFHTGQSIERIEKDTDRDNFMSAE 173

Query: 217 EAKKVGLIDVV 227
           EAK  GL+D V
Sbjct: 174 EAKAYGLVDDV 184


>gi|312195811|ref|YP_004015872.1| endopeptidase Clp [Frankia sp. EuI1c]
 gi|311227147|gb|ADP80002.1| Endopeptidase Clp [Frankia sp. EuI1c]
          Length = 210

 Score = 40.4 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 60/181 (33%), Gaps = 31/181 (17%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +  +D    + + ++SPGGS  +  AI+  +Q V+     I      +
Sbjct: 47  VSANDVMAQLLFLESEDPDRDISIYINSPGGSFTSLTAIYDTMQFVRPDIQTICMGQAAS 106

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L +       A + S +               ++                     
Sbjct: 107 AAAVLLAAGTPGKRFALQNSRILIHQPSGSGEGQSSDIE--------------------- 145

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226
                    +    +        +++++      +     +   +I +  EAK+ GLID 
Sbjct: 146 ---------IQAREILRMRSLLEKMLADHTGKAEEDIRRDIERDKILSADEAKEYGLIDE 196

Query: 227 V 227
           V
Sbjct: 197 V 197


>gi|168769871|ref|ZP_02794878.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4486]
 gi|195937919|ref|ZP_03083301.1| putative protease/scaffold protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|189361107|gb|EDU79526.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4486]
          Length = 629

 Score = 40.4 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 81/256 (31%), Gaps = 50/256 (19%)

Query: 38  VARIAIRGQIEDSQELIERI-ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           V  + I  +I         + + I+   + + + + + SPGG  + G AI+ A++    +
Sbjct: 13  VVHVRIYDEIGGYGVKASALTDEINACGNVSEIHLRIHSPGGDIFEGLAIYNALKNHPAK 72

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
           K  I  +  MAAS    I+   + IV  E +++           V               
Sbjct: 73  K--IVHIEGMAASMASFIAMCGDHIVMPENAMMMIHAPRGVTAGVSG------------- 117

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-G 215
                             V+   D++D          +        +   + +   W  G
Sbjct: 118 -----------------DVRRFADLMDKLGDTMAETYAGRTGRSKQEITAMMEAETWMDG 160

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
            E K  G  D      EV  ++ A+   +S          K           I S++   
Sbjct: 161 NECKANGFAD------EVIAAITAMARIES----------KRIGDFSNMPEKIKSMISQK 204

Query: 276 IPLMKQTKVQGLWAVW 291
               +Q ++ G+  ++
Sbjct: 205 TTSGEQERLNGIRELF 220


>gi|227500202|ref|ZP_03930271.1| endopeptidase Clp [Anaerococcus tetradius ATCC 35098]
 gi|227217724|gb|EEI83028.1| endopeptidase Clp [Anaerococcus tetradius ATCC 35098]
          Length = 197

 Score = 40.4 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D  S  +I ++  +  +D    +   ++SPGG   +G AI+  +  +K   
Sbjct: 33  IIFLSGEVRDEISDIIIAQLLFLESEDPDKDIQFYINSPGGVVTSGLAIYDTMNYIKPDV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L S A     +  +S +            +     + +  + +  
Sbjct: 93  STICIGQAASMAAVLLSSGAKGKRYSLPSSNIMIHQPSG---GAQGQASDIVIQAEQIIK 149

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGA 216
              K                                S++      K    +D     T  
Sbjct: 150 IKEKLNKIL---------------------------SDNTGQSLKKIEKDTDRDFAMTAE 182

Query: 217 EAKKVGLIDVV 227
           EA K GLID V
Sbjct: 183 EALKYGLIDKV 193


>gi|126178331|ref|YP_001046296.1| hypothetical protein Memar_0381 [Methanoculleus marisnigri JR1]
 gi|125861125|gb|ABN56314.1| protein of unknown function DUF114 [Methanoculleus marisnigri JR1]
          Length = 276

 Score = 40.4 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 66/183 (36%), Gaps = 21/183 (11%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           I DS+E++  I   + +     ++    +PGG   + E I  A+++   +  V   V   
Sbjct: 69  INDSEEVLRAIRLTAPEMPIDLIL---HTPGGLILSSEQIAMALRRH--KGKVTVFVPHY 123

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           A S G LI  A++ +V  E +++G +            L       +  +  P +     
Sbjct: 124 AMSGGTLICLAADEVVMDENAVLGPVDPRIGEYPAASLL-------RVPRLKPPEEIDDE 176

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220
              +   A +    + +         +   R    D    L  G  WT        +A++
Sbjct: 177 TFVLVDIAAKAQTQMREFVADLLRERMDAGR---ADSLARLLSGGTWTHDYPITFEQARE 233

Query: 221 VGL 223
           +GL
Sbjct: 234 LGL 236


>gi|237743260|ref|ZP_04573741.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           7_1]
 gi|260495117|ref|ZP_05815246.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 3_1_33]
 gi|229433039|gb|EEO43251.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           7_1]
 gi|260197560|gb|EEW95078.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 3_1_33]
          Length = 193

 Score = 40.4 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 55/179 (30%), Gaps = 29/179 (16%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  +I ++  +  +D    +I+ ++SPGGS   G AI+  +  +K     +      +  
Sbjct: 40  ANSIIAQLLYLEAEDPEKDIIMYINSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMG 99

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L + A     A E S +     L          D                       
Sbjct: 100 AFLLAAGAKGKRFALENSRIMIHQPLISGGLKGQATDI---------------------- 137

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227
                  +  + +         L++++     ++           +  EA   GLID V
Sbjct: 138 ------SIHANELLKIKDKLAELLAKNTGKTKEQILRDTERDNYLSSEEAVNYGLIDSV 190


>gi|225175200|ref|ZP_03729196.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169376|gb|EEG78174.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dethiobacter
           alkaliphilus AHT 1]
          Length = 193

 Score = 40.4 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I   I+D+    +I ++  +  +D    + + ++SPGGS YAG AI+  +Q +K   
Sbjct: 29  IIFIGSPIDDNVANLVIAQLLFLESEDPEKDINIYVNSPGGSVYAGLAIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     +   S +     L         ++     I  +  
Sbjct: 89  STICVGLAASMGAVLLAAGADGKRFSLPNSRIMVHQPLGGAQGQAVDIEIHAKEILRI-- 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                             ++S     P ++           +  
Sbjct: 147 ----------------------------RERLNEILSGHTGKPVEQIARDTDRDYFMSAE 178

Query: 217 EAKKVGLIDVV 227
           +AK+ GLID V
Sbjct: 179 QAKEYGLIDGV 189


>gi|170017407|ref|YP_001728326.1| protease subunit of ATP-dependent Clp protease [Leuconostoc citreum
           KM20]
 gi|169804264|gb|ACA82882.1| Protease subunit of ATP-dependent Clp protease [Leuconostoc citreum
           KM20]
          Length = 229

 Score = 40.4 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 61/204 (29%), Gaps = 45/204 (22%)

Query: 41  IAIRGQIEDSQEL---IERIERISRDD---------SATALIVSLSSPGGSAYAGEAIFR 88
           + I+G I ++ ++    + +   +              + L + ++S GG   A   I+ 
Sbjct: 3   LDIKGIITNNDDVEIYRQGLGYAATSPSDILANLPTDGSDLEIGINSGGGEVDAANEIYT 62

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
           A++    +                        I ++  S    I +      + P    +
Sbjct: 63  ALRNYPGKV--------------------ITQIESSAYSAASIIAMAGDKVQISPVAQLM 102

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
             +  +             + +      + +             V   R  P ++ L L 
Sbjct: 103 IHNASTYAGGNHNDLDKTSNALKSTDKAIAKAYS----------VKTGR--PVEEFLALM 150

Query: 209 DGRIW-TGAEAKKVGLIDVVGGQE 231
           D   W    +A ++GL+D V   E
Sbjct: 151 DKETWINADDALELGLVDEVMTFE 174


>gi|86610014|ref|YP_478776.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. JA-2-3B'a(2-13)]
 gi|115311349|sp|Q2JIP1|CLPP2_SYNJB RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|86558556|gb|ABD03513.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. JA-2-3B'a(2-13)]
          Length = 200

 Score = 40.4 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 56/176 (31%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGGS YAG AI+  +Q ++     I      +  A  
Sbjct: 42  IVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFL 101

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L        +A   + +     L         ++     I  +                 
Sbjct: 102 LAGGTKGKRIALPHARIMIHQPLGGAQGPATDIEIQAKEILFI----------------- 144

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227
                         +    L++     P ++           T  +AK+ GLID V
Sbjct: 145 -------------KNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKEYGLIDQV 187


>gi|311107134|ref|YP_003979987.1| enoyl-CoA hydratase [Achromobacter xylosoxidans A8]
 gi|310761823|gb|ADP17272.1| enoyl-CoA hydratase/isomerase family protein 18 [Achromobacter
           xylosoxidans A8]
          Length = 245

 Score = 40.4 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 58/209 (27%), Gaps = 28/209 (13%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
             LI  +ER + D +  A++++   P G   AG  + + +     R   +          
Sbjct: 15  DALIAALERANADPAVRAVLLASDLP-GRFCAGLDMKKLLDSTPARIHALLSKL-YIKLY 72

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
               +     I     ++ G    +     +    D        +    + A        
Sbjct: 73  DTQFNLTKPSISVVSGAVRGGGMTVAISSDLVVAADTATFGYPEIDVGVLPAIHYVHLP- 131

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                                +V + R         L  GRI+   EA  +GL+  V   
Sbjct: 132 --------------------GIVGKHRAFDL-----LFTGRIFDAQEAHGLGLVARVAPA 166

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
            ++ +    L    + +  +     +  +
Sbjct: 167 AQLLEQARLLARSLADKPPQVLAMGRRAF 195


>gi|160879125|ref|YP_001558093.1| endopeptidase Clp [Clostridium phytofermentans ISDg]
 gi|160427791|gb|ABX41354.1| Endopeptidase Clp [Clostridium phytofermentans ISDg]
          Length = 193

 Score = 40.4 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 62/191 (32%), Gaps = 31/191 (16%)

Query: 40  RIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G++    +  +I ++  +  +DS   + + ++SPGGS   G AI+  ++ +K   
Sbjct: 29  IIFINGEVNHVSAGLVIAQLLYLEAEDSKKDIRLYINSPGGSIPDGLAIYDTMRYLKCDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L         A   + +                            
Sbjct: 89  STTCIGMAASMGSFLLAGGTKGKRFALPNAEILIHQPSG--------------------- 127

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                     +      + +M   + ++     +++SE+      +    +D   + T  
Sbjct: 128 -------GIQAPAQATDIDIMSKHILNTRRRVNQILSENTGKEISQIEKDTDRDYYMTAE 180

Query: 217 EAKKVGLIDVV 227
           EA   G+ID +
Sbjct: 181 EALNYGIIDKI 191


>gi|167462695|ref|ZP_02327784.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 165

 Score = 40.4 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 61/179 (34%), Gaps = 31/179 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  +I ++  ++  D    + + ++SPGGS  AG AI+  +Q +K     I      +  
Sbjct: 13  ANSIIAQLLFLAAQDPDKDISLYINSPGGSITAGMAIYDTMQYIKPDVSTICVGMAASMG 72

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L + A     A   S V     L         ++                       
Sbjct: 73  AFLLNAGAVGKRYALPNSEVMIHQPLGGAEGQATDIEIRAKR------------------ 114

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                       +        R++SE    P +K    +D   + + +EAK+ GLID V
Sbjct: 115 ------------IIKMRENLNRILSERTGQPLEKIERDTDRDYFMSASEAKEYGLIDKV 161


>gi|168756419|ref|ZP_02781426.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4401]
 gi|168770135|ref|ZP_02795142.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4486]
 gi|189356545|gb|EDU74964.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4401]
 gi|189361013|gb|EDU79432.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4486]
          Length = 629

 Score = 40.4 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 81/256 (31%), Gaps = 50/256 (19%)

Query: 38  VARIAIRGQIEDSQELIERI-ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           V  + I  +I         + + I+   + + + + + SPGG  + G AI+ A++    +
Sbjct: 13  VVHVRIYDEIGGYGVKASALTDEINACGNVSEIHLRIHSPGGDIFEGLAIYNALKNHPAK 72

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
           K  I  +  MAAS    I+   + IV  E +++           V               
Sbjct: 73  K--IVHIEGMAASMASFIAMCGDHIVMPENAMMMIHAPRGVTAGVSG------------- 117

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-G 215
                             V+   D++D          +        +   + +   W  G
Sbjct: 118 -----------------DVRRFADLMDKLGDTMAETYAGRTGRSKQEITAMMEAETWMDG 160

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
            E K  G  D      EV  ++ A+   +S          K           I S++   
Sbjct: 161 NECKANGFAD------EVIAAITAMARIES----------KRIGDFSNMPEKIKSMISQK 204

Query: 276 IPLMKQTKVQGLWAVW 291
               +Q ++ G+  ++
Sbjct: 205 TTSGEQERLNGIRELF 220


>gi|317128309|ref|YP_004094591.1| hypothetical protein Bcell_1597 [Bacillus cellulosilyticus DSM
           2522]
 gi|315473257|gb|ADU29860.1| protein of unknown function DUF107 [Bacillus cellulosilyticus DSM
           2522]
          Length = 444

 Score = 40.4 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 81/286 (28%), Gaps = 28/286 (9%)

Query: 5   LKKIKTRYV-MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERIS 61
           +K+I+  +  ++ L ++ +      +  + +   V  I +  ++E      L   I    
Sbjct: 1   MKRIRLIFFSLMMLFSIGLSLVPIQAQGDGSDKLVYYIPVEQEVERGLVAFLQRSINTAL 60

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
            D  A  ++  +++PGG   A   I   I+                       +   +  
Sbjct: 61  ED-GADHIVFEINTPGGLVAAANEIAALIENTPTPT----------------TAFVIDEA 103

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181
           ++A   +      +   P  +    ++        +          +            +
Sbjct: 104 MSAGAYISLKADQIVMVPGARMGAAQVISGGDGNAADDKAHSAWLATMKAAAEGNDRDPL 163

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
              +       + E R         L      T +EA +VG  + +    E       L 
Sbjct: 164 YALAMADPSIDLPEYR----AGVDDLLS---LTASEALEVGYAEAIASNREELLQFLGLE 216

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
             +       +      +  +   +SI   +  ++ L+ +    G 
Sbjct: 217 NAREQEMEVSFAEQIARFVTNPIVISILLSVA-SLGLVLELYSPGF 261


>gi|195051114|ref|XP_001993036.1| GH13604 [Drosophila grimshawi]
 gi|193900095|gb|EDV98961.1| GH13604 [Drosophila grimshawi]
          Length = 255

 Score = 40.4 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 58/190 (30%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D  S  ++ ++  +  ++    + + ++SPGG   AG AI+  +Q VK   
Sbjct: 55  IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L + A  +  +   + +                D L  + + +K 
Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGGAQGQAT--DILIHAEEIIKI 172

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                           A    +   D                              T  E
Sbjct: 173 KRQLTNIYVKHAQYDYAEMSSRMERDH---------------------------FMTPEE 205

Query: 218 AKKVGLIDVV 227
           AK +G+ID V
Sbjct: 206 AKVLGIIDHV 215


>gi|299821953|ref|ZP_07053841.1| ATP-dependent Clp protease proteolytic subunit [Listeria grayi DSM
           20601]
 gi|299817618|gb|EFI84854.1| ATP-dependent Clp protease proteolytic subunit [Listeria grayi DSM
           20601]
          Length = 203

 Score = 40.4 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 61/199 (30%), Gaps = 33/199 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  ++ ++  +   D    + + ++SPGGS  AG AI+  +  VK   
Sbjct: 35  IIMLGSAIDDNVANSIVAQLLFLDSQDPDKDIYLYINSPGGSISAGMAIYDTMNLVKADV 94

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   S +     L         ++           
Sbjct: 95  QTIGMGMAASMGSFLLAAGADGKRFALPNSEIMIHQPLGGAQGQATEIEIAAR------- 147

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +        R++SE    P +            T  
Sbjct: 148 -----------------------HILKIKERMNRILSEKTGQPIEVIARDTDRDNFMTAD 184

Query: 217 EAKKVGLIDVVGGQEEVWQ 235
           EAK+ GLID +   +   +
Sbjct: 185 EAKEYGLIDDIISSKNALK 203


>gi|163743918|ref|ZP_02151288.1| Protease subunit of ATP-dependent Clp protease [Phaeobacter
           gallaeciensis 2.10]
 gi|161382763|gb|EDQ07162.1| Protease subunit of ATP-dependent Clp protease [Phaeobacter
           gallaeciensis 2.10]
          Length = 202

 Score = 40.4 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 61/190 (32%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++ +  + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 30  IIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +  + +  +   S V        +                   
Sbjct: 90  STLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMVHQPSGGFQGQ---------------- 133

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                +    +E   K  + + ++           +             L      +  E
Sbjct: 134 ---ATDIMIHAEETLKLKKRLNEIYVKHTGQEYDKI----------VDALERDNFMSPEE 180

Query: 218 AKKVGLIDVV 227
           AK  GLID +
Sbjct: 181 AKDFGLIDEI 190


>gi|116811647|emb|CAL25990.1| CG5045 [Drosophila melanogaster]
          Length = 253

 Score = 40.4 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D  S  ++ ++  +  ++    + + ++SPGG   AG AI+  +Q VK   
Sbjct: 55  IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L + A  +  +   + +               +      I  +K 
Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKR 174

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                                   +   +          R                T  E
Sbjct: 175 --------------------QLTNIYVKHAKNTYEEMCGRMERD---------HFMTPEE 205

Query: 218 AKKVGLIDVV 227
           AK +G+ID V
Sbjct: 206 AKVLGIIDHV 215


>gi|88810607|ref|ZP_01125864.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrococcus
           mobilis Nb-231]
 gi|88792237|gb|EAR23347.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrococcus
           mobilis Nb-231]
          Length = 214

 Score = 40.4 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED Q   LI ++  +  ++    + + ++SPGG   AG AI+  +Q VK   
Sbjct: 42  VIFLVGPVEDHQANLLIAQLLFLESENPDKDIHLYINSPGGVVSAGLAIYDTMQFVKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A+        S +     L  +                   
Sbjct: 102 STVCLGQAASMGALLLTGGAAGKRYCLPNSRIMIHQPLGGFQGQ---------------- 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                            V++    + +      +++++      +     ++   + G E
Sbjct: 146 --------------ATDVEIHAREILAMRERLNQILAQHTGQDIETIQQDTERDNFMGPE 191

Query: 218 AKK-VGLIDVV 227
           A +  G++D V
Sbjct: 192 AAQSYGIVDGV 202


>gi|307244056|ref|ZP_07526175.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492580|gb|EFM64614.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Peptostreptococcus stomatis DSM 17678]
          Length = 194

 Score = 40.4 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 5/150 (3%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  DD    + + ++SPGGS  AG AI+  +Q +K     I      +  A  
Sbjct: 44  VVAQLLFLEADDPDKDIHLYINSPGGSVTAGLAIYDTMQYIKPDVSTICVGMAASMGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGV----LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
           L + A     A   S +           Q   V+     L  + + + +   +    P+ 
Sbjct: 104 LAAGAKGKRYALPNSTIMIHQPLGGSRGQATDVEIHTKFLLNTKEKLNTILSQRTGQPYD 163

Query: 169 EVNPK-AVQMMQDVVDSSYHWFVRLVSESR 197
            V                    +  V E+R
Sbjct: 164 VVKENTERDNFMTADQGQAFGIIDHVIENR 193


>gi|146337660|ref|YP_001202708.1| ATP-dependent Clp protease proteolytic subunit [Bradyrhizobium sp.
           ORS278]
 gi|146190466|emb|CAL74465.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Bradyrhizobium sp. ORS278]
          Length = 205

 Score = 40.4 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 63/197 (31%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++ D+    +  ++  +  ++    + + ++SPGG   +G A++  +Q VK   
Sbjct: 33  IVFLNGEVNDTVSALVCAQLLFLEAENPKRPIHLYINSPGGVVTSGLAMYDTMQFVKAPV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +                     +    S+   + +  + P  +  L    + +     
Sbjct: 93  HTLC--------------------MGTARSMGSFLLMAGE-PGERTALPNASLHVHQPLG 131

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                                      +    +RL +E     Y+     L      T  
Sbjct: 132 GFQGQASDIMIHAREMEQ---------TKRRMIRLYAEHCGRSYEDVERTLDRDHFMTAD 182

Query: 217 EAKKVGLIDVVGGQEEV 233
           EA+  GLID V  Q ++
Sbjct: 183 EAQDWGLIDRVVKQRDL 199


>gi|110456662|gb|ABG74781.1| ATP-dependent protease catalytic subunit [Jasminum leratii]
          Length = 261

 Score = 40.4 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 29/188 (15%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           + E+I  +  ++  D    L   ++SPGG+ + G AI+ A++ +      I      + +
Sbjct: 79  ANEIIAAMLYLNMQDPLQRLYFFINSPGGAVHDGLAIYDAMKYIDQEIHTICYGQAASMA 138

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           +  L S A     A   S+     V+   P + P   +L   ++                
Sbjct: 139 SVLLASGAKGHRGAYPHSM-----VMMHQPALAPTRGRLQRLVRERNC------------ 181

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV-G 228
                      +           V E+R         L      +  EA++ G+ID + G
Sbjct: 182 -----------LNILKERIIDIYVCETRKDRLVIERTLERDHYMSPIEAREYGIIDKIYG 230

Query: 229 GQEEVWQS 236
           G  +  + 
Sbjct: 231 GIFDKIEE 238


>gi|150402944|ref|YP_001330238.1| hypothetical protein MmarC7_1020 [Methanococcus maripaludis C7]
 gi|150033974|gb|ABR66087.1| protein of unknown function DUF114 [Methanococcus maripaludis C7]
          Length = 274

 Score = 40.0 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            IEDS+E++  I     D     ++    +PGG   A E I  A+++ K +  VI   + 
Sbjct: 66  TIEDSEEILRAIRMTPEDMPIDLIL---HTPGGLVLASEQIATALKEHKAKTTVIIPHYA 122

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           M+   G LI+ A++ I+  + +++G +            ++ +    
Sbjct: 123 MSG--GSLIALAADEIIIDKNAVMGPVDPQVGQYPAASIINAINTKY 167


>gi|78061562|ref|YP_371470.1| membrane-bound serine protease [Burkholderia sp. 383]
 gi|77969447|gb|ABB10826.1| Membrane-bound serine protease [Burkholderia sp. 383]
          Length = 525

 Score = 40.0 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 69/199 (34%), Gaps = 9/199 (4%)

Query: 38  VARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK- 94
           V  I I G I    +  ++  ++R +R  +  A+ + L +PGG   +   I +AI     
Sbjct: 58  VVVIPINGAIGPASADFIVRSLDRAARQHAPLAI-LQLDTPGGLDTSMRQIIKAILGSPV 116

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK- 153
                +      AASAG  I  AS+    A  + +G+   +               +   
Sbjct: 117 PVAAFVAPGGARAASAGTYIVYASHFAAMAPGTNLGAASPVQFGIGGAAPPGGNPAAPHA 176

Query: 154 ---SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSD 209
              +  +S      +  + +                  ++R +++ R    +     + +
Sbjct: 177 PAGTSGASGASDAAATQAALPTDTQSTEIRKAMQDASAYIRGLAQLRGRNAEWGERAVRE 236

Query: 210 GRIWTGAEAKKVGLIDVVG 228
               +  EA+   ++D++ 
Sbjct: 237 AVSLSANEARTQHVVDLIA 255


>gi|42520204|ref|NP_966119.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|60389690|sp|Q73I59|CLPP_WOLPM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|42409942|gb|AAS14053.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 208

 Score = 40.0 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IED+    ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +    
Sbjct: 29  IIFVTGPIEDNMASVIVAQLLFLESENPNKDICMYINSPGGVVTAGLSIYDTMQYINPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +       +   S +        Y      ++     I  V  
Sbjct: 89  STLCIGQAASMGSLLLAAGTKGKRYSLPHSRIMIHQPSGGYHGQATDIEIHANEILRV-- 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216
                                            ++  +       K   + +  +     
Sbjct: 147 ----------------------------KKKLNQIYEKHTGNSLKKIEGMMERDKFMDPE 178

Query: 217 EAKKVGLIDVV 227
           EA+K+GLID V
Sbjct: 179 EARKIGLIDRV 189


>gi|332157739|ref|YP_004423018.1| nfeD protein [Pyrococcus sp. NA2]
 gi|331033202|gb|AEC51014.1| nfeD protein [Pyrococcus sp. NA2]
          Length = 439

 Score = 40.0 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSS 75
           + L +V  +  +     S  V    IRGQI      +    I     + +A A+I+ L +
Sbjct: 5   ILLFIVLLTLVASPSLASNVVYVAQIRGQITSYTYDQFDRYITIAEEN-NARAIIIELDT 63

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
           PGG     +A+   IQ+++  K  +        
Sbjct: 64  PGG---RADAMMNIIQRIQQAKVPVIVFVYPPG 93


>gi|195434156|ref|XP_002065069.1| GK15263 [Drosophila willistoni]
 gi|194161154|gb|EDW76055.1| GK15263 [Drosophila willistoni]
          Length = 255

 Score = 40.0 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 59/190 (31%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D  S  ++ ++  +  ++    + + ++SPGG   AG AI+  +Q VK   
Sbjct: 55  IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L + A  +  +   + +            +     + +  + +  
Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSG---GAQGQATDILIHAEEIIK 171

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
              +              +M Q +                                T  E
Sbjct: 172 IKRQLTAIYVKHAKNSYDEMCQRMERDH--------------------------FMTPEE 205

Query: 218 AKKVGLIDVV 227
           AK +G+ID V
Sbjct: 206 AKTLGIIDHV 215


>gi|194859835|ref|XP_001969460.1| GG10114 [Drosophila erecta]
 gi|190661327|gb|EDV58519.1| GG10114 [Drosophila erecta]
          Length = 253

 Score = 40.0 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D  S  ++ ++  +  ++    + + ++SPGG   AG AI+  +Q VK   
Sbjct: 55  IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L + A  +  +   + +               +      I  +K 
Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKR 174

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                                   +   +          R                T  E
Sbjct: 175 --------------------QLTNIYVKHAKNTYEEMCGRMERD---------HFMTPEE 205

Query: 218 AKKVGLIDVV 227
           AK +G+ID V
Sbjct: 206 AKVLGIIDHV 215


>gi|12719432|ref|NP_075503.1| protease [Staphylococcus phage phiSLT]
 gi|21283128|ref|NP_646216.1| protease [Staphylococcus aureus subsp. aureus MW2]
 gi|29028649|ref|NP_803338.1| scaffolding protease [Staphylococcus phage phi 12]
 gi|49485840|ref|YP_043061.1| phage protease [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57651296|ref|YP_185261.1| prophage L54a, Clp protease, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|66395523|ref|YP_239858.1| ORF015 [Staphylococcus phage 42E]
 gi|66395672|ref|YP_240004.1| ORF016 [Staphylococcus phage 47]
 gi|87161020|ref|YP_494099.1| phiSLT ORF257-like protein, putative prophage protease
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88195249|ref|YP_500052.1| scaffolding protease [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|156603996|ref|YP_001429942.1| putative protease [Staphylococcus phage tp310-2]
 gi|161509680|ref|YP_001575339.1| bacteriophage protease [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|209363589|ref|YP_002268007.1| prohead protease [Staphylococcus phage phi2958PVL]
 gi|215401148|ref|YP_002332403.1| putative scaffold protein [Staphylococcus phage phiSauS-IPLA35]
 gi|253315475|ref|ZP_04838688.1| phiSLT ORF257-like protein, putative prophage protease
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|257432454|ref|ZP_05608817.1| scaffolding protease [Staphylococcus aureus subsp. aureus E1410]
 gi|258420298|ref|ZP_05683245.1| scaffolding protease [Staphylococcus aureus A9719]
 gi|258448837|ref|ZP_05696947.1| scaffolding protease [Staphylococcus aureus A6224]
 gi|282911087|ref|ZP_06318889.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282919223|ref|ZP_06326958.1| phage protease [Staphylococcus aureus subsp. aureus C427]
 gi|284024509|ref|ZP_06378907.1| phiSLT ORF257-like protein, putative prophage protease
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848478|ref|ZP_06789224.1| phage protease [Staphylococcus aureus A9754]
 gi|295407559|ref|ZP_06817352.1| phage protease [Staphylococcus aureus A8819]
 gi|296276330|ref|ZP_06858837.1| phiSLT ORF257-like protein, putative prophage protease
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297207829|ref|ZP_06924263.1| bacteriophage protease [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297246589|ref|ZP_06930422.1| phage protease [Staphylococcus aureus A8796]
 gi|297591011|ref|ZP_06949649.1| bacteriophage protease [Staphylococcus aureus subsp. aureus MN8]
 gi|300911915|ref|ZP_07129358.1| bacteriophage protease [Staphylococcus aureus subsp. aureus TCH70]
 gi|12697862|dbj|BAB21734.1| protease [Staphylococcus phage phiSLT]
 gi|18920573|gb|AAL82313.1| scaffolding protease [Staphylococcus phage phi 12]
 gi|21204568|dbj|BAB95264.1| protease [Staphylococcus aureus subsp. aureus MW2]
 gi|49244283|emb|CAG42710.1| phage protease [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57285482|gb|AAW37576.1| prophage L54a, Clp protease, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|62636016|gb|AAX91127.1| ORF015 [Staphylococcus phage 42E]
 gi|62636096|gb|AAX91207.1| ORF016 [Staphylococcus phage 47]
 gi|87126994|gb|ABD21508.1| phiSLT ORF257-like protein, putative prophage protease
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202807|gb|ABD30617.1| scaffolding protease [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|154818082|gb|ABS87509.1| putative protease [Staphylococcus phage tp310-2]
 gi|160368489|gb|ABX29460.1| bacteriophage protease [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|208973090|dbj|BAG74406.1| prohead protease [Staphylococcus phage phi2958PVL]
 gi|215260499|gb|ACJ64629.1| gp40 [Staphylococcus phage phiSauS-IPLA35]
 gi|257283333|gb|EEV13465.1| scaffolding protease [Staphylococcus aureus subsp. aureus E1410]
 gi|257843723|gb|EEV68125.1| scaffolding protease [Staphylococcus aureus A9719]
 gi|257857874|gb|EEV80765.1| scaffolding protease [Staphylococcus aureus A6224]
 gi|282317033|gb|EFB47407.1| phage protease [Staphylococcus aureus subsp. aureus C427]
 gi|282324782|gb|EFB55092.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|294824504|gb|EFG40927.1| phage protease [Staphylococcus aureus A9754]
 gi|294967578|gb|EFG43614.1| phage protease [Staphylococcus aureus A8819]
 gi|296887545|gb|EFH26444.1| bacteriophage protease [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297176547|gb|EFH35812.1| phage protease [Staphylococcus aureus A8796]
 gi|297575897|gb|EFH94613.1| bacteriophage protease [Staphylococcus aureus subsp. aureus MN8]
 gi|300886161|gb|EFK81363.1| bacteriophage protease [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333119|gb|ADL23312.1| caseinolytic phage protease [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|312438083|gb|ADQ77154.1| bacteriophage protease [Staphylococcus aureus subsp. aureus TCH60]
 gi|315128434|gb|EFT84442.1| bacteriophage protease [Staphylococcus aureus subsp. aureus CGS03]
 gi|315197736|gb|EFU28070.1| bacteriophage protease [Staphylococcus aureus subsp. aureus CGS01]
 gi|329729413|gb|EGG65818.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus 21189]
 gi|329730627|gb|EGG67012.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 257

 Score = 40.0 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 38/221 (17%)

Query: 41  IAIRGQIEDSQELIERI------ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           I I G I   +     +       ++      + + V ++S GGS + G AI+  ++   
Sbjct: 20  IFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHP 79

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
            +      V  +AAS   +I+ + + I   + S +                         
Sbjct: 80  AKIN--IYVDALAASIASVIAMSGDTIFMHKNSFLMIHN--------------------- 116

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213
                             +  +    +  +        + +++++  +    + D   W 
Sbjct: 117 --------SWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWL 168

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           T  EA   GLID + G  E+  S+      +     +D   
Sbjct: 169 TAEEALSFGLIDEILGANEIAASISKEQYKRFENVPEDLKK 209


>gi|239828281|ref|YP_002950905.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus sp.
           WCH70]
 gi|259585956|sp|C5D7M9|CLPP_GEOSW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|239808574|gb|ACS25639.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           sp. WCH70]
          Length = 196

 Score = 40.0 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 65/196 (33%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  ++ ++  ++ +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IIILGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIYDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   S +     L         ++           
Sbjct: 89  STICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEIAAKR------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +        R+++E+   P +            T  
Sbjct: 143 ------------------------ILFLRDKLNRILAENTGQPVEVIERDTDRDNFMTAQ 178

Query: 217 EAKKVGLIDVVGGQEE 232
           +A++ G+ID V  + +
Sbjct: 179 KAQEYGIIDRVLTRID 194


>gi|322384476|ref|ZP_08058158.1| ATP-dependent Clp protease proteolytic subunit-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321150686|gb|EFX44161.1| ATP-dependent Clp protease proteolytic subunit-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 193

 Score = 40.0 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 61/179 (34%), Gaps = 31/179 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  +I ++  ++  D    + + ++SPGGS  AG AI+  +Q +K     I      +  
Sbjct: 41  ANSIIAQLLFLAAQDPDKDISLYINSPGGSITAGMAIYDTMQYIKPDVSTICVGMAASMG 100

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L + A     A   S V     L         ++                       
Sbjct: 101 AFLLNAGAVGKRYALPNSEVMIHQPLGGAEGQATDIEIRAKR------------------ 142

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                       +        R++SE    P +K    +D   + + +EAK+ GLID V
Sbjct: 143 ------------IIKMRENLNRILSERTGQPLEKIERDTDRDYFMSASEAKEYGLIDKV 189


>gi|15604378|ref|NP_220894.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           prowazekii str. Madrid E]
 gi|6225160|sp|Q9ZD29|CLPP_RICPR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|3861070|emb|CAA14970.1| ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT (clpP) [Rickettsia
           prowazekii]
 gi|292572133|gb|ADE30048.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           prowazekii Rp22]
          Length = 201

 Score = 40.0 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 53/188 (28%), Gaps = 31/188 (16%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  ++    + + ++SPGG   AG AI+  +Q +K +   +      +  +  
Sbjct: 44  IVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQFIKPKVATLCIGQACSMGSLL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L      +  +   S +        Y      ++        +                 
Sbjct: 104 LCGGEHGMRYSLPHSRIMIHQPSGGYKGQATDIEIHARETLKI----------------- 146

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQE 231
                              L S+            +      +  EAKK GL+D +    
Sbjct: 147 -------------KRLLNELYSKHTKQELKYIEKSMERDNFMSSEEAKKFGLVDNIISSR 193

Query: 232 EVWQSLYA 239
           +    L  
Sbjct: 194 DTIAFLAQ 201


>gi|238762757|ref|ZP_04623726.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           kristensenii ATCC 33638]
 gi|238699062|gb|EEP91810.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           kristensenii ATCC 33638]
          Length = 647

 Score = 40.0 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/211 (9%), Positives = 55/211 (26%), Gaps = 40/211 (18%)

Query: 32  EDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           + +    A I I  +I      +++    ++ +        + + + SPGG  + G AI+
Sbjct: 2   KASGEKSADIYIYEEIGYWGVTARQFASSLKALGD---IDHINLRIHSPGGDVFEGIAIY 58

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             +      K V  +                        S+   I ++     +      
Sbjct: 59  NLLNSHPASKTVYID--------------------GLAASMASVIAMVGNPVIMPENAMM 98

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
           +      +              ++                  +   ++      ++  V+
Sbjct: 99  MIHKPWGITGGDANDMRDYADLLDKVE------------GVLIPSYAKKTGKTPEELAVM 146

Query: 208 SDGRIW-TGAEAKKVGLIDVVGGQEEVWQSL 237
                W T  E  + G  D +    +    +
Sbjct: 147 LGEETWLTAQECVEHGFADQLLPSMQAMARI 177


>gi|163736126|ref|ZP_02143545.1| Endopeptidase Clp [Phaeobacter gallaeciensis BS107]
 gi|161389996|gb|EDQ14346.1| ATP-dependent Clp protease proteolytic subunit [Phaeobacter
           gallaeciensis BS107]
          Length = 202

 Score = 40.0 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/190 (12%), Positives = 61/190 (32%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++ +  + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 30  IIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +  + +  +   S V        +                   
Sbjct: 90  STLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMVHQPSGGFQGQ---------------- 133

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                +    +E   K  + + ++           +             L      +  +
Sbjct: 134 ---ATDIMIHAEETLKLKKRLNEIYVKHTGQEYDKI----------VDALERDNFMSPED 180

Query: 218 AKKVGLIDVV 227
           AK  GLID +
Sbjct: 181 AKDFGLIDEI 190


>gi|283469602|emb|CAQ48813.1| protease [Staphylococcus aureus subsp. aureus ST398]
 gi|283470729|emb|CAQ49940.1| protease [Staphylococcus aureus subsp. aureus ST398]
          Length = 257

 Score = 40.0 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 38/221 (17%)

Query: 41  IAIRGQIEDSQELIERI------ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           I I G I   +     +       ++      + + V ++S GGS + G AI+  ++   
Sbjct: 20  IFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHP 79

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
            +      V  +AAS   +I+ + + I   + S +                         
Sbjct: 80  AKIN--IYVDALAASIASVIAMSGDTIFMHKNSFLMIHN--------------------- 116

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213
                             +  +    +  +        + +++++  +    + D   W 
Sbjct: 117 --------SWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWL 168

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           T  EA   GLID + G  E+  S+      +     +D   
Sbjct: 169 TAEEALSFGLIDEILGANEIAASISKEQYKRFENVPEDLKK 209


>gi|189500114|ref|YP_001959584.1| hypothetical protein Cphamn1_1169 [Chlorobium phaeobacteroides
          BS1]
 gi|189495555|gb|ACE04103.1| protein of unknown function DUF107 [Chlorobium phaeobacteroides
          BS1]
          Length = 434

 Score = 40.0 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATAL 69
           V+L    +TV   +  +     +  V  ++++G +    +      I++  + +   A+
Sbjct: 2  IVLLLFAAVTVFSSTLRAEEAKGNKTVLFLSLQGTVNPGSADFFERAIDQAEK-EKVHAI 60

Query: 70 IVSLSSPGGSAYAGEAIFRAIQK 92
          +V L +PGG   +  A+ +++  
Sbjct: 61 LVELDTPGGLVSSLRAMVQSVLA 83


>gi|326338731|gb|EGD62551.1| Prophage Clp protease-like protein [Escherichia coli O157:H7 str.
           1125]
          Length = 629

 Score = 40.0 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 81/256 (31%), Gaps = 50/256 (19%)

Query: 38  VARIAIRGQIEDSQELIERI-ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           V  + I  +I         + + I+   + + + + + SPGG  + G AI+ A++    +
Sbjct: 13  VVHVRIYDEIGGYGVKASALTDEINACGNVSEIHLRIHSPGGDIFEGLAIYNALKNHPAK 72

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
           K  I  +  MAAS    I+   + IV  E +++           V               
Sbjct: 73  K--IVHIEGMAASMASFIAMCGDHIVMPENAMMMIHAPRGVTAGVSG------------- 117

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-G 215
                             V+   D++D          +        +   + +   W  G
Sbjct: 118 -----------------DVRRFADLMDKLGDTMAETYAGRTGRSKQEITAMMEAETWMDG 160

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275
            E K  G  D      EV  ++ A+   +S          K           I S++   
Sbjct: 161 NECKANGFAD------EVIAAITAMARIES----------KRIGDFSNMPEKIKSMISQK 204

Query: 276 IPLMKQTKVQGLWAVW 291
               +Q ++ G+  ++
Sbjct: 205 TTSGEQERLNGIRELF 220


>gi|224178037|ref|YP_002600892.1| proteolytic subunit 2 of clp protease [Pyramimonas parkeae]
 gi|215882704|gb|ACJ71077.1| proteolytic subunit 2 of clp protease [Pyramimonas parkeae]
          Length = 198

 Score = 40.0 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 56/180 (31%), Gaps = 31/180 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           + +L+  +  +S +D +  L + ++SPGGS   G A++ A+Q V      I         
Sbjct: 44  ANQLVGIMLYLSAEDESKRLYIYINSPGGSVTCGIAVYDAMQHVNASVTTICV------- 96

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
                            + + S  +       +  L    + I   +           +E
Sbjct: 97  --------------GIAASMASFVLAGGERGHRLALSHARIMIHQPQGGSQGQASEVTAE 142

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVG 228
                                ++ +E            +   R  +G EAK+ GL+D V 
Sbjct: 143 AEEVMRI---------RRQVGQIYAERTGQRLTTIARDMDRDRFMSGREAKEYGLVDQVA 193


>gi|218510664|ref|ZP_03508542.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           Brasil 5]
 gi|327192437|gb|EGE59394.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           CNPAF512]
          Length = 203

 Score = 40.0 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D+    +  ++  +  ++    + + ++SPGG   +G A++  ++ ++   
Sbjct: 33  IIFLNGEVNDTVSALVCAQLLFLEAENPNKPINLYINSPGGVVTSGLAMYDTMRFIRAPV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                         + +   +   + +   + G  G     P     + +     +    
Sbjct: 93  --------------HTLCMGTARSMGSFLLMAGEPGGRAALPNASILIHQPSGGFQG--- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +  + +  +     RL +E     Y+     +   R  T  
Sbjct: 136 -------------QASDMLIHAEEILKTKQRMTRLYAEHCGRSYEDFEHGMDRDRFMTAE 182

Query: 217 EAKKVGLIDVV 227
           EA + GLID +
Sbjct: 183 EALEWGLIDRI 193


>gi|319898776|ref|YP_004158869.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella
           clarridgeiae 73]
 gi|319402740|emb|CBI76287.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella
           clarridgeiae 73]
          Length = 210

 Score = 40.0 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 63/210 (30%), Gaps = 39/210 (18%)

Query: 40  RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G +ED+  ++   ++  +  ++    + + ++SPGG   +G AI+  +Q ++   
Sbjct: 37  IIFINGPVEDNMAMLVCAQLLFLEAENPKKEINLYINSPGGVVTSGMAIYDTMQFIRPSV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L + A+    A   + +                            
Sbjct: 97  STLCMGQAASMGSLLLTAGATGRRFALPNARIMVHQPSG--------------------- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                      + +          +         +  +     Y+     L      T  
Sbjct: 136 -------GFQGQASDIERHA--QDIVKMKRRLNEIYVQHTGQSYEVIEKTLDRDHFMTAE 186

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
           E+K+ GLID      +V Q       ++  
Sbjct: 187 ESKQFGLID------DVIQYRAETEKEEKD 210


>gi|325577258|ref|ZP_08147742.1| ATP-dependent Clp protease, protease subunit [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160840|gb|EGC72961.1| ATP-dependent Clp protease, protease subunit [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 193

 Score = 40.0 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED     ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  VIFLSGEVEDRMANLIVAQLLFLESEDPKKDINIYINSPGGSVTAGMAIYDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L    +    A   + V     L  +                   
Sbjct: 89  RTLCIGQACSMGAFLLAGGTAGKRAALPNARVMIHQPLGGFRGQ---------------- 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            +Q+    +          ++       ++    +D   + +  
Sbjct: 133 --------------ASDIQIHAQEILKIKQTLNERLAFHTGQSIERIEKDTDRDNFMSAE 178

Query: 217 EAKKVGLIDVV 227
           EAK  GL+D V
Sbjct: 179 EAKAYGLVDDV 189


>gi|225867968|ref|YP_002743916.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus equi
           subsp. zooepidemicus]
 gi|225871117|ref|YP_002747064.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus equi
           subsp. equi 4047]
 gi|254763801|sp|C0M7M8|CLPP_STRE4 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|259585965|sp|C0MGT5|CLPP_STRS7 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|225700521|emb|CAW94984.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus equi subsp. equi 4047]
 gi|225701244|emb|CAW98203.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus equi subsp. zooepidemicus]
          Length = 196

 Score = 40.0 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 59/197 (29%), Gaps = 31/197 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K   
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +  
Sbjct: 87  QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      + H   ++++++      +    ++   W +  
Sbjct: 145 --------------------------KTRHRLEKILAQNAGKTIKQIHKDAERDYWMSAE 178

Query: 217 EAKKVGLIDVVGGQEEV 233
           E    G ID +    E+
Sbjct: 179 ETLAYGFIDEIMENNEL 195


>gi|323484093|ref|ZP_08089463.1| ATP-dependent Clp protease [Clostridium symbiosum WAL-14163]
 gi|323402535|gb|EGA94863.1| ATP-dependent Clp protease [Clostridium symbiosum WAL-14163]
          Length = 236

 Score = 40.0 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 62/192 (32%), Gaps = 37/192 (19%)

Query: 43  IRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
           + G+I D      E+  ++     +  A  + V ++SPGG  +A   I+  + +   +  
Sbjct: 21  LNGEISDETWFGDEVTPKLFEKELNAGAGDVTVWINSPGGDVFAAAQIYNMLMEY--KGD 78

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
           V  +V  +AASA  +I+ A   ++ +   ++                        ++   
Sbjct: 79  VTVKVDALAASAASVIAMAGTSVLISPVGMMMIHN------------------PMTIAIG 120

Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAE 217
             K        ++                  +        +   +   L D   W    +
Sbjct: 121 DSKEMQKAGEMLDE------------VKESIMNAYEIKTGLSRARISHLMDAESWFNAKK 168

Query: 218 AKKVGLIDVVGG 229
           A ++G  D + G
Sbjct: 169 AVELGFADGILG 180


>gi|219684233|ref|ZP_03539177.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           garinii PBr]
 gi|219685103|ref|ZP_03539923.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           garinii Far04]
 gi|219672222|gb|EED29275.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           garinii PBr]
 gi|219673199|gb|EED30218.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           garinii Far04]
          Length = 197

 Score = 40.0 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  +I ++  +  +DS   + + L+SPGGS  AG AI+  +Q +K   
Sbjct: 33  IIFLSGEINDPKADTVIAQLLFLESEDSNKDIYLYLNSPGGSITAGLAIYDTMQYIKPDV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             I      +  A  L   A     +   S +       
Sbjct: 93  RTICIGQAASMGAFLLAGGARGKRESLAYSRIMIHQPWG 131


>gi|116243161|sp|Q1RJH2|CLPP_RICBR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 227

 Score = 40.0 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 61/204 (29%), Gaps = 34/204 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IED  +  +  ++  +  ++    + + ++SPGG   AG AI+  +Q +K + 
Sbjct: 51  IIFVCGPIEDHMANLITAQLLFLEAENPEKDIYMYINSPGGVVTAGLAIYDTMQYIKPKV 110

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L      +  +   S V        Y      ++        +K 
Sbjct: 111 ATLCIGQACSMGSFLLCGGEKGMRYSLPHSRVMIHQPSGGYRGQATDIEIHAQETLKIK- 169

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                                             L S+            +      +  
Sbjct: 170 -----------------------------KILNSLYSKHTGQDVKHVEKSMERDNFMSPE 200

Query: 217 EAKKVGLIDVVGGQEEVWQSLYAL 240
           EAKK G+ID +    +  + L   
Sbjct: 201 EAKKFGIIDKIITHRD-IKLLKDK 223


>gi|149182480|ref|ZP_01860954.1| TepA [Bacillus sp. SG-1]
 gi|148849811|gb|EDL63987.1| TepA [Bacillus sp. SG-1]
          Length = 103

 Score = 40.0 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 9/82 (10%)

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD---------GRIWTGAEAKKVGLIDV 226
               + +D      V  V+    +  +    L           G    G +A K GLID 
Sbjct: 16  PQTFEYLDKMQDRVVNFVTRHSKVTEEDFKELMFAKGNLTRDIGTNVVGEDAVKYGLIDG 75

Query: 227 VGGQEEVWQSLYALGVDQSIRK 248
           VGG  E  + L  L   +   K
Sbjct: 76  VGGVGEAIKKLNELIELKGGTK 97


>gi|325662072|ref|ZP_08150691.1| hypothetical protein HMPREF0490_01429 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471735|gb|EGC74954.1| hypothetical protein HMPREF0490_01429 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 275

 Score = 40.0 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 72/226 (31%), Gaps = 37/226 (16%)

Query: 41  IAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           + + G I +      +   ++ +   +  +  + V ++SPGG   A   I+  +     +
Sbjct: 28  LELYGTIAEESWFDDDFTPQMFKDELNAGSGDITVWINSPGGDCVAAAQIYNMLANY--K 85

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
             V  ++  +AASA  +I+ A + ++ +  S++               ++K    +  V 
Sbjct: 86  GNVTVKIDGIAASAASVIAMAGSTVLMSPVSMMMIHNPATFAFGDHAEMEKAIEMLDGV- 144

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-G 215
                                            +   +    +   K   L D   W   
Sbjct: 145 -----------------------------KDSIINAYTLKTGMSRAKLSRLMDAETWMDA 175

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
            +A ++G  D +  + E  +   +   D      KD N   +  F 
Sbjct: 176 TKAVELGFADNIITKNEFPKKEESKEDDSKKSTEKDVNTSNSVLFS 221


>gi|255589435|ref|XP_002534960.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223524291|gb|EEF27423.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 435

 Score = 40.0 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 55/198 (27%), Gaps = 33/198 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 268 VIFLVGPVNDMTANLVVAQLLFLEAENPDKDISLYINSPGGSVTAGMSIYDTMQFIKPDV 327

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A         S V     L  +      ++           
Sbjct: 328 STLCIGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKE------ 381

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +         +++       D            +  
Sbjct: 382 ------------------------ILYLKDKLNGIMAHHTGQNIDTIANDTDRDNFMSAD 417

Query: 217 EAKKVGLIDVVGGQEEVW 234
            AK  GL+D V       
Sbjct: 418 AAKAYGLVDQVIAARSAV 435


>gi|118464428|ref|YP_880241.1| acyl-CoA dehydrogenase [Mycobacterium avium 104]
 gi|254773867|ref|ZP_05215383.1| putative acyl-CoA dehydrogenase [Mycobacterium avium subsp. avium
           ATCC 25291]
 gi|118165715|gb|ABK66612.1| putative acyl-CoA dehydrogenase [Mycobacterium avium 104]
          Length = 715

 Score = 40.0 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 18/242 (7%)

Query: 63  DDSATALI-VSLSSPGGSAYAGEA-----IFRAIQKVKNRKPVITEVHEMAASAGYLISC 116
           D  A  ++ ++L  P GSA          +  A++++   K  IT V   +A   +    
Sbjct: 9   DKDADGIVTLTLDDPTGSANVMNEHYKESMHNAVERLVAEKDSITGVVITSAKKTFFAGG 68

Query: 117 ASNIIV-AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-------PMKAEPSPFS 168
               ++     +   +   +         L+ LG  + +  +         +        
Sbjct: 69  DLKSMINLGPENAGEAFDTVEAVKRDLRALETLGKPVVAAINGAALGGGLEIALACHHRI 128

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSE---SRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
             + K + +    V          V+       I      +LS G  +   +AK++GL+D
Sbjct: 129 AADVKGLVVGLPEVTLGLLPGGGGVTRTVRMFGIQNAFMNILSQGTRFKPDKAKEIGLVD 188

Query: 226 VV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
            + G  EE+  +  A          + W+           +    + +  + P + + ++
Sbjct: 189 ELVGSVEELVPAAKAWIKANPDAHEQPWDKKGYKMPGGTPSSPALAGILPSFPALLKKQL 248

Query: 285 QG 286
           +G
Sbjct: 249 KG 250


>gi|307611846|emb|CBX01559.1| hypothetical protein LPW_32461 [Legionella pneumophila 130b]
          Length = 501

 Score = 40.0 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 81/248 (32%), Gaps = 35/248 (14%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRD 63
           K ++T Y+ + L    +V    S         +  + I+G I    +  L   I+     
Sbjct: 65  KFMQTSYIFIFLTLFLLVGLQTSFAA-----KIVELNIKGPIGPATADYLERGIKSAQD- 118

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
             A  +++ + +PGG     ++    IQ        I                      +
Sbjct: 119 --ADLIVILIDTPGGL---YDSTRNIIQLFLLSDVPIVTYVSPTG----------ARAAS 163

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
           A T L+ +  +    P  +                            + K    M++ V 
Sbjct: 164 AGTYLMYASTLAAMAPGTQMGAASPVSLGTGFSEGEK----------DEKKKSTMENKVT 213

Query: 184 SSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALG 241
                 +R +++ R    D     +++G+  T  EA   G+++ +   ++++   +  + 
Sbjct: 214 HDAVATIRSLAQLRGRDLDFAEKAVTEGKSITANEALSKGVVNYIAKNRDDLLSQINGIK 273

Query: 242 VDQSIRKI 249
           V Q+ + I
Sbjct: 274 VSQNNKTI 281


>gi|170720927|ref|YP_001748615.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
           W619]
 gi|325274289|ref|ZP_08140400.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas sp.
           TJI-51]
 gi|226706466|sp|B1J692|CLPP_PSEPW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|169758930|gb|ACA72246.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           putida W619]
 gi|324100572|gb|EGB98307.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas sp.
           TJI-51]
          Length = 213

 Score = 40.0 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 45  VIFLVGPVEDYMANLVVAQMLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +      ++     I ++  
Sbjct: 105 STICIGQACSMGAFLLAAGAKGKRHCLPNSRVMIHQPLGGFQGQATDIEIHAQEILNI-- 162

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                             L++       +            + +
Sbjct: 163 ----------------------------KARLNELLAYHTGQDLETIKRDTERDNFMSAS 194

Query: 217 EAKKVGLIDVV 227
            A + GLID V
Sbjct: 195 RAAEYGLIDSV 205


>gi|256074339|ref|XP_002573483.1| peptidase Clp (S14 family) [Schistosoma mansoni]
 gi|238658663|emb|CAZ29715.1| peptidase Clp (S14 family) [Schistosoma mansoni]
          Length = 632

 Score = 40.0 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D  +  +I ++  +  +D  T + + ++SPGGS  AG AI+  +Q ++   
Sbjct: 70  IICLMGAVTDEMAGSVIAQLLFLQSEDKRTPIHLYINSPGGSVTAGLAIYDTMQFIRPPV 129

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L + +     A   S +                            
Sbjct: 130 ATFCIGQASSMGSLLLAAGSHGCRFALPHSSIMVHQPSGSAHGQ---------------- 173

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            +++  + +  +      +         +      D   + T  
Sbjct: 174 --------------ASDIKIRAEELIRTRSVINTIYERHTKQSQEVIEKWMDRDYFMTAE 219

Query: 217 EAKKVGLIDVV 227
           EA   G++D V
Sbjct: 220 EAVSYGIVDRV 230


>gi|170078453|ref|YP_001735091.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. PCC 7002]
 gi|169886122|gb|ACA99835.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. PCC 7002]
          Length = 198

 Score = 40.0 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 33/186 (17%)

Query: 43  IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102
           +  +I +   ++ ++  +  DD    + + ++SPGGS  AG  IF  + +V+     I  
Sbjct: 34  VNDEIANL--IVAQLLFLEADDPEKDIYLYINSPGGSVSAGMGIFDTMNQVRPDVCTICI 91

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
               +  A  L + A    ++   S +     L      +     + +  K +     K 
Sbjct: 92  GLAASMGAFLLSAGAKGKRMSLPNSRIMIHQPLG---GAQGQATDIEIQAKEILYLKGKL 148

Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKV 221
                                          ++    P +K  + +D   + + AEAK  
Sbjct: 149 NQHL---------------------------ADHTGQPLEKIEIDTDRDFFMSAAEAKDY 181

Query: 222 GLIDVV 227
           GLID V
Sbjct: 182 GLIDQV 187


>gi|167628597|ref|YP_001679096.1| ATP-dependent clp protease proteolytic subunit [Heliobacterium
           modesticaldum Ice1]
 gi|167591337|gb|ABZ83085.1| ATP-dependent clp protease proteolytic subunit [Heliobacterium
           modesticaldum Ice1]
          Length = 199

 Score = 40.0 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 61/179 (34%), Gaps = 31/179 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +I ++  +  +D    + + ++SPGG+  +G AI+  +Q ++     I      +  A  
Sbjct: 45  IIAQLLFLEAEDPDKDIHLYINSPGGAITSGFAIYDTMQLIRCDVSTICVGMAASMGAFL 104

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     A+  + +     L         ++                          
Sbjct: 105 LAAGAKGKRYASPNAEIMIHQPLGGVKGQATEIE-------------------------- 138

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQ 230
               +    +  +     +++++    P ++    +D   + +  EAK  G+ID V   
Sbjct: 139 ----IHARHILKTRDRLNKILADRTGQPLERIERDTDRDYFMSAEEAKAYGIIDGVMEF 193


>gi|315181806|gb|ADT88719.1| hypothetical protein vfu_B00484 [Vibrio furnissii NCTC 11218]
          Length = 444

 Score = 40.0 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 4/120 (3%)

Query: 12  YVMLSLVTLTVVYFSWSSHV-EDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA 68
            ++ SL++ + +  + +++     S  V  IAI G I  +    +I+ +ER ++  +A A
Sbjct: 8   VLLTSLLSFSTLATADTTNAPAAPSQTVPVIAISGAIGPAVGDYVIKELERANQQVNAPA 67

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127
           +IV+L +PGG +     I + I         +       AASAG  I  A +I   A  +
Sbjct: 68  VIVTLDTPGGLSSTLRDINQHILASDIPVLCLVYPPGARAASAGTYILYACHIAAMAPAT 127


>gi|152968202|ref|YP_001363986.1| endopeptidase Clp [Kineococcus radiotolerans SRS30216]
 gi|151362719|gb|ABS05722.1| Endopeptidase Clp [Kineococcus radiotolerans SRS30216]
          Length = 198

 Score = 40.0 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I+D     +I ++  ++ + S   + + ++SPGGSA A  AI+  +Q V+   
Sbjct: 30  IVFLHGEIDDGVANVVIAQLVHLASESSTAEISLYVNSPGGSATALMAIYDTMQFVQPDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +A+A  L + A       E S V               L      +  ++ 
Sbjct: 90  ATFCVGQAASAAAVLLAAGAPGKRSVLEHSRVLLHQPSGGAQGTAADLQIQAREVLRIR- 148

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                        +     +                +     P ++    L    +  GA
Sbjct: 149 -------------SEIERVL----------------ARHTGHPVERLRADLDRDLVLPGA 179

Query: 217 EAKKVGLIDVVGG 229
           EA   G+ D V  
Sbjct: 180 EAVAYGVADRVVT 192


>gi|297621676|ref|YP_003709813.1| ATP-dependent Clp protease proteolytic subunit [Waddlia
           chondrophila WSU 86-1044]
 gi|297376977|gb|ADI38807.1| ATP-dependent Clp protease proteolytic subunit [Waddlia
           chondrophila WSU 86-1044]
          Length = 196

 Score = 40.0 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 52/181 (28%), Gaps = 27/181 (14%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           + E+I ++  +   D    ++  ++SPGGS  +G AI+  +Q + +    +      +  
Sbjct: 39  ANEIIRKLWYLELKDPGKPILFVINSPGGSVDSGFAIWDQVQMISSPVTTLVTGLAASMG 98

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           +   +  A         + +     +          D    + + +K+          + 
Sbjct: 99  SVLSLCAAKGKRYVTPQARIMIHQPMIGGVIQGQATDLDIQAREILKTREKLVRIYMDAT 158

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
                                                +      +  EAK+ GLID +  
Sbjct: 159 GKDYE---------------------------TIDRAIDRDTWMSAEEAKEFGLIDAIID 191

Query: 230 Q 230
            
Sbjct: 192 S 192


>gi|41406888|ref|NP_959724.1| FadB_1 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395238|gb|AAS03107.1| FadB_1 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 715

 Score = 40.0 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 18/242 (7%)

Query: 63  DDSATALI-VSLSSPGGSAYAGEA-----IFRAIQKVKNRKPVITEVHEMAASAGYLISC 116
           D  A  ++ ++L  P GSA          +  A++++   K  IT V   +A   +    
Sbjct: 9   DKDADGIVTLTLDDPTGSANVMNEHYKESMHNAVERLVAEKDSITGVVITSAKKTFFAGG 68

Query: 117 ASNIIV-AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-------PMKAEPSPFS 168
               ++     +   +   +         L+ LG  + +  +         +        
Sbjct: 69  DLKSMINLGPENAGEAFDTVEAVKRDLRALETLGKPVVAAINGAALGGGLEIALACHHRI 128

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSE---SRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
             + K + +    V          V+       I      +LS G  +   +AK++GL+D
Sbjct: 129 AADIKGLVVGLPEVTLGLLPGGGGVTRTVRMFGIQNAFMNILSQGTRFKPDKAKEIGLVD 188

Query: 226 VV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
            + G  EE+  +  A          + W+           +    + +  + P + + ++
Sbjct: 189 ELVGSVEELVPAAKAWIKANPDAHEQPWDKKGYKMPGGTPSSPALAGILPSFPALLKKQL 248

Query: 285 QG 286
           +G
Sbjct: 249 KG 250


>gi|17231849|ref|NP_488397.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
           7120]
 gi|21759069|sp|Q8YP43|CLPP3_ANASP RecName: Full=Probable ATP-dependent Clp protease proteolytic
           subunit 3; AltName: Full=Endopeptidase Clp 3
 gi|17133493|dbj|BAB76056.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
           7120]
          Length = 197

 Score = 40.0 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 61/187 (32%), Gaps = 33/187 (17%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            +  +I +  ++I  +  +  +D    + + ++SPGG   +G AI+  +Q +K+    I 
Sbjct: 38  DVDDEIAN--QIIAVMLYLDSEDPGKDIYLYINSPGGMVTSGLAIYDTMQHIKSDVVTIC 95

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                +  +  L +      +A   S +               ++     I  ++     
Sbjct: 96  VGLAASMGSFLLAAGTKGKRMALPHSRIMIHQPSGGTRGQATDIEIEAREILRIRH---- 151

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220
                                        ++ + + + P  K     D   + +  EA +
Sbjct: 152 --------------------------QLNQIYANNTSQPLAKIEKDMDRDFFMSAQEAME 185

Query: 221 VGLIDVV 227
            GLID V
Sbjct: 186 YGLIDRV 192


>gi|238898003|ref|YP_002923683.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|259585958|sp|C4K4P2|CLPP_HAMD5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|229465761|gb|ACQ67535.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 215

 Score = 40.0 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 59/195 (30%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+E+  +  ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +    
Sbjct: 42  VIFLTGQVEEHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFITPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A +       + V     L  +      ++           
Sbjct: 102 STICIGQACSMGAFLLAAGAKSKRYCLPNARVMIHQPLGGFQGQASDIEIHAKE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                                   +         L++                    +  
Sbjct: 156 ------------------------ILKVKKRMNDLMAIHTKKTLKIIEKDTERDHFLSAE 191

Query: 217 EAKKVGLIDVVGGQE 231
           EAKK GL+D V  + 
Sbjct: 192 EAKKYGLVDCVLTER 206


>gi|187940099|gb|ACD39231.1| protease domain protein [Pseudomonas aeruginosa]
          Length = 693

 Score = 40.0 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 49/184 (26%), Gaps = 33/184 (17%)

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117
             +      T + + + SPGG  + G AI+  ++           +  +AAS   +I+ A
Sbjct: 61  RDLKAMGDLTKINLHIHSPGGDVFEGTAIYNLLRNHPASVD--VYIDGLAASMASVIAMA 118

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
            + I   E +++                         ++             ++      
Sbjct: 119 GDTIYMPENAMMMVH------------------KPWGIQGGDADDMRRYAELLDKVE--- 157

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQS 236
                       V   +       D    L     W  G EA   G  D +    +    
Sbjct: 158 ---------DTLVMAYANKTGKSADDIKALLKEETWMNGREAVAAGFADQLTEPLQAAAH 208

Query: 237 LYAL 240
           L + 
Sbjct: 209 LSSK 212


>gi|304316359|ref|YP_003851504.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777861|gb|ADL68420.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 194

 Score = 40.0 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + +  +I D     ++ ++  +  +D    + + ++SPGGS  +  AI+  +Q +K   
Sbjct: 29  IVFLGEEINDVSASLVVAQLLFLEGEDPDKDIWLYINSPGGSITSAFAIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +A A  L + A     +   S +     L      +     + +  + +  
Sbjct: 89  VTMCVGMAASAGAFLLAAGAKGKRFSLPNSEIMIHQPLG---GTQGQATDIKIHAERIIK 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
              K                                SE    P +K    ++   +    
Sbjct: 146 MKQKLNKIL---------------------------SERTGQPLEKIERDTERDFFMDPE 178

Query: 217 EAKKVGLIDVV 227
           EAK  GLID +
Sbjct: 179 EAKAYGLIDDI 189


>gi|218672149|ref|ZP_03521818.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           GR56]
          Length = 203

 Score = 40.0 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 59/192 (30%), Gaps = 35/192 (18%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D+    +  ++  +  ++    + + ++SPGG   +G A++  ++ ++   
Sbjct: 33  IIFLNGEVNDTVSALVCAQLLFLEAENPKKPINLYINSPGGVVTSGLAMYDTMRFIRAPV 92

Query: 98  PVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
             +         S   +   A         S++               L           
Sbjct: 93  HTLCMGTARSMGSFLLMAGEAGERAALPNASILIHQPSGGFQGQASDML----------- 141

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTG 215
                               +  + +  +     RL +E     Y+     +   R  T 
Sbjct: 142 --------------------IHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTA 181

Query: 216 AEAKKVGLIDVV 227
            EA + GLID +
Sbjct: 182 EEALEWGLIDRI 193


>gi|167032910|ref|YP_001668141.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
           GB-1]
 gi|189082463|sp|B0KJG6|CLPP_PSEPG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166859398|gb|ABY97805.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           putida GB-1]
          Length = 213

 Score = 40.0 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 58/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 45  VIFLVGPVEDYMANLVVAQMLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A         S V     L  +      +      I S+  
Sbjct: 105 STICIGQACSMGAFLLTAGAKGKRHCLPNSRVMIHQPLGGFQGQATDIQIHAQEILSI-- 162

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                             L++       +            + +
Sbjct: 163 ----------------------------KARLNELLAYHTGQDLETIQRDTERDNFMSAS 194

Query: 217 EAKKVGLIDVV 227
            A + GLID V
Sbjct: 195 RAAEYGLIDSV 205


>gi|209520426|ref|ZP_03269187.1| conserved hypothetical protein [Burkholderia sp. H160]
 gi|209499118|gb|EDZ99212.1| conserved hypothetical protein [Burkholderia sp. H160]
          Length = 189

 Score = 40.0 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 36  PHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
             V  I I G I    +  ++  ++R + D  A   ++ L +PGG   +   I +AI
Sbjct: 71  NSVVVIPINGAIGPASADFIVRSLQRAA-DQRAQLAVLQLDTPGGLDTSMRQIIKAI 126


>gi|224533546|ref|ZP_03674135.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi CA-11.2a]
 gi|224513219|gb|EEF83581.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi CA-11.2a]
          Length = 194

 Score = 40.0 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  +I ++  +  +DS+  + + L+SPGGS  AG AI+  +Q +K   
Sbjct: 30  IIFLSGEINDPKADTVIAQLLFLESEDSSKDIYLYLNSPGGSITAGLAIYDTMQYIKPDV 89

Query: 98  PVIT 101
             I 
Sbjct: 90  RTIC 93


>gi|304391391|ref|ZP_07373333.1| Clp protease [Ahrensia sp. R2A130]
 gi|303295620|gb|EFL89978.1| Clp protease [Ahrensia sp. R2A130]
          Length = 212

 Score = 40.0 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 59/202 (29%), Gaps = 34/202 (16%)

Query: 40  RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G IED   ++   ++  +  ++    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 37  IIFITGPIEDGMSVLVCAQLLFLEAENPKKEISLYINSPGGVVTAGMAIYDTMQFIKPPV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +   ++      + V                            
Sbjct: 97  ATLCMGQACSMGSLLLTAGEKDMRFILPQARVMLHQPSG--------------------- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                      +V+          +         +  +      +     L         
Sbjct: 136 -------GMQGKVSDIER--NYTDIIKVKQRLNDIYVKHTGQDLETIERTLDRDHFMNAE 186

Query: 217 EAKKVGLIDV-VGGQEEVWQSL 237
           E+ + G++D  +  ++E+    
Sbjct: 187 ESVEFGVVDKVIASRDEIEGEA 208


>gi|148912770|ref|YP_001293349.1| Putative Clp protease [Pseudomonas phage F10]
          Length = 693

 Score = 40.0 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 49/184 (26%), Gaps = 33/184 (17%)

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117
             +      T + + + SPGG  + G AI+  ++           +  +AAS   +I+ A
Sbjct: 61  RDLKAMGDLTKINLHIHSPGGDVFEGTAIYNLLRNHPASVD--VYIDGLAASMASVIAMA 118

Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177
            + I   E +++                         ++             ++      
Sbjct: 119 GDTIYMPENAMMMVH------------------KPWGIQGGDADDMRRYAELLDKVE--- 157

Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQS 236
                       V   +       D    L     W  G EA   G  D +    +    
Sbjct: 158 ---------DTLVMAYANKTGKSADDIKALLKEETWMNGREAVAAGFADQLTEPLQAAAH 208

Query: 237 LYAL 240
           L + 
Sbjct: 209 LSSK 212


>gi|156742881|ref|YP_001433010.1| AMP-dependent synthetase and ligase [Roseiflexus castenholzii DSM
            13941]
 gi|156234209|gb|ABU58992.1| AMP-dependent synthetase and ligase [Roseiflexus castenholzii DSM
            13941]
          Length = 1912

 Score = 40.0 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 65/227 (28%), Gaps = 30/227 (13%)

Query: 26   SWSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGS 79
            S ++  +  +  +A + +     ++       EL   ++ ++R +   A++       GS
Sbjct: 896  SAAAEQKALTQRIAIVTVTNPPVNALNERALDELNTIVDHLARREDVAAVV-----FTGS 950

Query: 80   AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
                      I+++      +             +   +++      ++           
Sbjct: 951  GTKSFVAGADIKQMLEEMHTV--------EDAMALPNNAHLAFRKIETMNKPCIAAINGV 1002

Query: 140  YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
             +   ++        +            +E     + +             RL+   R  
Sbjct: 1003 ALGGGMEFALACHYRIA--------DLHAEFGQPEINLRLLPGYGGTQRLPRLLYSRRGE 1054

Query: 200  --PYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVD 243
                   +++  GR      A ++GLID V  G EE       +  +
Sbjct: 1055 AGLIKALMIIMGGRTLNAERAYEIGLIDKVAHGHEEALTLATQMARE 1101


>gi|258427137|ref|ZP_05688059.1| scaffolding protease [Staphylococcus aureus A9299]
 gi|257849915|gb|EEV73874.1| scaffolding protease [Staphylococcus aureus A9299]
          Length = 257

 Score = 40.0 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 70/221 (31%), Gaps = 38/221 (17%)

Query: 41  IAIRGQIEDSQELIERI------ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           I I G I   +     +       ++      + + V ++S GGS + G AI+  ++   
Sbjct: 20  IFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHP 79

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
            +      V  +AAS   +I+ + + I   + S +                         
Sbjct: 80  AKIN--IYVDALAASIASVIAMSGDTIFKPKNSFLMIHN--------------------- 116

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213
                             +  +    +  +        + +++N+  ++   + D   W 
Sbjct: 117 --------SWVMTVGNAEELRKTADLLDKTDAVSNSAYLDKAKNLDQEQLKQMLDAETWL 168

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           T  EA   GLID V G  E+  S+      +     +D   
Sbjct: 169 TAEEALSFGLIDEVLGANEIAASISKEQYKRFENVPEDLKK 209


>gi|194761774|ref|XP_001963100.1| GF15771 [Drosophila ananassae]
 gi|190616797|gb|EDV32321.1| GF15771 [Drosophila ananassae]
          Length = 252

 Score = 40.0 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 58/190 (30%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D  S  ++ ++  +  ++    + + ++SPGG   AG AI+  +Q VK   
Sbjct: 55  IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L + A  +  +   + +            +     + +  + +  
Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSG---GAQGQATDILIHAEEIIK 171

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
              +              +M   +                                T  E
Sbjct: 172 IKRQLTSIYVKHAKNSYDEMCSRMERDH--------------------------FMTPEE 205

Query: 218 AKKVGLIDVV 227
           AK +G+ID V
Sbjct: 206 AKTLGIIDHV 215


>gi|218439261|ref|YP_002377590.1| ATP-dependent Clp protease-like protein [Cyanothece sp. PCC 7424]
 gi|218171989|gb|ACK70722.1| Endopeptidase Clp [Cyanothece sp. PCC 7424]
          Length = 228

 Score = 40.0 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 64/182 (35%), Gaps = 22/182 (12%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           I+ +Q +I ++  +  DD    +   ++S G S Y G+AI    +        I  +   
Sbjct: 53  IDVTQLIIAQLLYLQFDDPDKPIYFYINSTGTSWYTGDAIGFETEAF-AICDTINYIKPP 111

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
             +     +  +  ++ +  +     G     P+    L++     +             
Sbjct: 112 VHTICIGQAMGTAAMILSAGT----KGCRASLPHATIVLNQNRTGAQG------------ 155

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLID 225
                   +Q+    V ++    + + +++     +K     D   + T  +AK+ GLID
Sbjct: 156 ----QATDIQIRAKEVLANKRTMLEIFAKNTGQTVEKLAKDLDRTFYMTPEQAKEYGLID 211

Query: 226 VV 227
            V
Sbjct: 212 RV 213


>gi|6723197|dbj|BAA89607.1| capsid protein [Bacteriophage WO]
          Length = 118

 Score = 40.0 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Y  FV+L++ +R +  +K      G  + G +A ++GL D V    E    
Sbjct: 13  YEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFINK 62


>gi|116695678|ref|YP_841254.1| enoyl-CoA hydratase/isomerase [Ralstonia eutropha H16]
 gi|113530177|emb|CAJ96524.1| Enoyl-CoA hydratase/isomerase [Ralstonia eutropha H16]
          Length = 297

 Score = 40.0 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/176 (10%), Positives = 48/176 (27%), Gaps = 14/176 (7%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
            +L+  +     DD    +I+  + P  S  AG     A++        +T         
Sbjct: 44  DDLVAALRDAEYDDDIKVIILKGNGP--SFCAGHDYNDAVKSY---GLELTPDGGKPRRP 98

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
                   +  +        +                    ++ V  +    +       
Sbjct: 99  NQRTRLQRDRRLGMSYMAFQNSAKPVIAQVHGHCTGVGIYLVELVDLAIAADDACFSHAE 158

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
               +      ++S    +   V+           ++  G  + G+EA ++GL++ 
Sbjct: 159 QRFGLAGNTWHMNSQILMYGAKVAR---------ELMLLGERFNGSEACRLGLVNR 205


>gi|295401529|ref|ZP_06811498.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109546|ref|YP_003987862.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacillus
           sp. Y4.1MC1]
 gi|294976441|gb|EFG52050.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311214647|gb|ADP73251.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           sp. Y4.1MC1]
          Length = 196

 Score = 40.0 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 65/196 (33%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  ++ ++  ++ +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IIILGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIYDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   S +     L         ++           
Sbjct: 89  STICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEIAAKR------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +        R++SE+   P D            T  
Sbjct: 143 ------------------------ILFLRDKLNRILSENTGQPIDVIERDTDRDNFMTAQ 178

Query: 217 EAKKVGLIDVVGGQEE 232
           +A++ G+ID V  + +
Sbjct: 179 KAQEYGIIDRVLTRVD 194


>gi|254468869|ref|ZP_05082275.1| ATP-dependent Clp protease, proteolytic subunit ClpP [beta
           proteobacterium KB13]
 gi|207087679|gb|EDZ64962.1| ATP-dependent Clp protease, proteolytic subunit ClpP [beta
           proteobacterium KB13]
          Length = 207

 Score = 40.0 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 58/194 (29%), Gaps = 31/194 (15%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G ++D     ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 43  VVFLVGPVDDMTANLVVAQLLFLEAENPDKDISLYINSPGGSVTAGMAIYDTMQFIKPDV 102

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A +       S V     L      +     + +  K +  
Sbjct: 103 STLCIGQAASMGALLLTAGAKDKRFCLPNSRVMIHQPLG---GFQGQASDIEIHAKEILY 159

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
              K               +                                    +  +
Sbjct: 160 LKDKLNRILSHHTGQDIKTIS--------------------------KDTDRDNFMSSED 193

Query: 218 AKKVGLIDVVGGQE 231
           A K GL+D V  + 
Sbjct: 194 AVKYGLVDKVINER 207


>gi|325662430|ref|ZP_08151036.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|331086220|ref|ZP_08335302.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|325471264|gb|EGC74488.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|330406379|gb|EGG85893.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 193

 Score = 40.0 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 51/181 (28%), Gaps = 31/181 (17%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K            +
Sbjct: 39  VSASVIVAQLLFLEAEDPEKDIHLYINSPGGSVTAGMAIYDTMQFIKCDVSTTCIGMAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L   A     A   + +            +     + +    +  +  K      
Sbjct: 99  MGAFLLAGGAKGKRYALPNAEIMIHQPSG---GAQGQATDIKIVADHILKTRTKLNKIL- 154

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226
                                     +E+                  +  EAK  GLID 
Sbjct: 155 --------------------------AENTGQDLSVIEVDTERDNYMSAEEAKAYGLIDE 188

Query: 227 V 227
           V
Sbjct: 189 V 189


>gi|308174327|ref|YP_003921032.1| membrane bound hydrolase [Bacillus amyloliquefaciens DSM 7]
 gi|307607191|emb|CBI43562.1| putative membrane bound hydrolase [Bacillus amyloliquefaciens DSM
          7]
          Length = 438

 Score = 40.0 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 4  VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISR 62
          + +K KT   +       +       + + + P V  I +   +E      + R  + ++
Sbjct: 1  MFRK-KTGIAVALFGLFVLSLLGVQLNAKADHPSVYVIPVEKNVEQGLASFLSRSFKDAK 59

Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAI 90
          +  A+ +I+ +++PGG+  +   I   I
Sbjct: 60 ESGASHIILDINTPGGAVQSALDIADII 87


>gi|121608115|ref|YP_995922.1| enoyl-CoA hydratase/isomerase [Verminephrobacter eiseniae EF01-2]
 gi|121552755|gb|ABM56904.1| Enoyl-CoA hydratase/isomerase [Verminephrobacter eiseniae EF01-2]
          Length = 269

 Score = 40.0 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 26/64 (40%)

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           L  GR  TG EA ++GL D +  Q++V     AL  + +          +      L + 
Sbjct: 171 LYTGRRITGEEAVRIGLADELVAQDQVRARAQALAGEIAASAPIAVESTRASLRAGLVDA 230

Query: 267 SISS 270
             ++
Sbjct: 231 VRAA 234


>gi|316936723|gb|ADU60356.1| capsid protein [Wolbachia phage WO]
          Length = 135

 Score = 40.0 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
               +  +++  +Q  VD  Y  F++L++ +R +  +K      G  + G +A ++GL D
Sbjct: 2   HMEPMTSESLGSLQKEVDRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 60

Query: 226 VVGGQEE 232
            V    E
Sbjct: 61  GVTTFFE 67


>gi|313680083|ref|YP_004057822.1| hypothetical protein Ocepr_1192 [Oceanithermus profundus DSM 14977]
 gi|313152798|gb|ADR36649.1| protein of unknown function DUF107 [Oceanithermus profundus DSM
           14977]
          Length = 426

 Score = 40.0 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 57/237 (24%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLS 74
           L+   +++ +  +           + I G I++  +  + + + R  R + A+ +++ + 
Sbjct: 6   LILSFLIFLAGWAQAAS-----YVVQIEGTIDNPLAAYVEDALVRAER-EGASGVVLWID 59

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
           +PGG   A   I  A+ +                    L + A      +  +L+     
Sbjct: 60  TPGGRVDAAMRISDAVLQTP------------------LPTLAVVKNAFSAGALIALSAE 101

Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194
                        L + +            +P +E      + +  +         R V+
Sbjct: 102 QVAMLPGSEIGAALPIVV------------TPVTEPTAADRKFISALKGK-----FRAVA 144

Query: 195 ESRNIPYDKTLVLSDGRI-------------WTGAEAKKVGLID-VVGGQEEVWQSL 237
           E+R  P +    + D  I              T A+A ++G+ D       +  +  
Sbjct: 145 EARGRPVELAEAMVDPEIEVEGLAGKGEPLTLTAAKAVELGVADFEAASLRDALERA 201


>gi|118791462|ref|XP_319765.3| AGAP009019-PA [Anopheles gambiae str. PEST]
 gi|116117612|gb|EAA14822.3| AGAP009019-PA [Anopheles gambiae str. PEST]
          Length = 225

 Score = 40.0 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D     ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q VK   
Sbjct: 53  IICLMGPIHDDLSSLIVAQLLFLQSENGTKPIHMYINSPGGSVTAGLAIYDTMQYVKPPV 112

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L + A  +  +   + +                            
Sbjct: 113 ATWCVGQACSMGSLLLAAGAPGMRHSLPNARIMIHQPSGGAQGQ---------------- 156

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                            +Q+  + +         +  +      D     +      +  
Sbjct: 157 --------------ATDIQIQAEEILKLKKQLTEIYGKHTKTSLDVLYSKMERDTFLSPE 202

Query: 217 EAKKVGLIDVV 227
           EA+ +G+ID V
Sbjct: 203 EAQTLGIIDTV 213


>gi|326330783|ref|ZP_08197084.1| Clp protease [Nocardioidaceae bacterium Broad-1]
 gi|325951313|gb|EGD43352.1| Clp protease [Nocardioidaceae bacterium Broad-1]
          Length = 222

 Score = 39.6 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 58/180 (32%), Gaps = 31/180 (17%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
           ++  +  ++  +S +D    + + ++SPGGS  AG AI+  +  + N    +     +AA
Sbjct: 55  NANAICAQLLLLSAEDPEADIFLHINSPGGSVDAGMAIYDTMNYIPNDVATVG--MGLAA 112

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
           S G  + CA                           +                       
Sbjct: 113 SMGQFLLCAGAKGKR-----YALPHARIMMHQPSSGMGG--------------------- 146

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227
             +   +++            + L+SE      ++        R +T AEA   GL+D V
Sbjct: 147 --SASDIKIQAQQSLHIKKVLLELISEHTGQSVEQVTVDADRDRWFTAAEALDYGLVDQV 204


>gi|225858557|ref|YP_002740067.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae 70585]
 gi|254763802|sp|C1C691|CLPP_STRP7 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|225721123|gb|ACO16977.1| Clp protease [Streptococcus pneumoniae 70585]
          Length = 196

 Score = 39.6 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 59/192 (30%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +EDS    +I ++  +   DS   + + +++PGGS  AG AI   +  +K   
Sbjct: 27  IIMLTGPVEDSMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +  
Sbjct: 87  QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      + +   ++++E+     +K    ++   W +  
Sbjct: 145 --------------------------KTRNTLEKILAENSGQSMEKVHADAERDNWMSAQ 178

Query: 217 EAKKVGLIDVVG 228
           E  + G ID + 
Sbjct: 179 ETLEYGFIDEIM 190


>gi|195978714|ref|YP_002123958.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195975419|gb|ACG62945.1| ATP-dependent Clp protease proteolytic subunit ClpP [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 207

 Score = 39.6 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 59/197 (29%), Gaps = 31/197 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K   
Sbjct: 38  IIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +  
Sbjct: 98  QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      + H   ++++++      +    ++   W +  
Sbjct: 156 --------------------------KTRHRLEKILAQNAGKTIKQIHKDAERDYWMSAE 189

Query: 217 EAKKVGLIDVVGGQEEV 233
           E    G ID +    E+
Sbjct: 190 ETLAYGFIDEIMENNEL 206


>gi|169830803|ref|YP_001716785.1| hypothetical protein Daud_0619 [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637647|gb|ACA59153.1| protein of unknown function DUF107 [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 443

 Score = 39.6 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 71/224 (31%), Gaps = 37/224 (16%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIER-ISRD 63
             +      +L  V + ++  +           V  + + G I     + + ++R I+  
Sbjct: 7   RNRRIFAMCVLIFVGVALLVSAVPVQGRVA-DQVVVLRVDGPIVPV--VAQYLDRGIADA 63

Query: 64  DSATAL-IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           +   A+ ++ L++PGG     + I + I        V                 A     
Sbjct: 64  ERLGAVCVIELNTPGGLYDTTQKIVQRIMNADVPVVVFVSP-------------AGGWAG 110

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           +A T +  S  V    P                          P +    +     ++ +
Sbjct: 111 SAGTFITISAHVAAMAP------------------GSRIGAAHPVAAGGEQMSGAQEEKI 152

Query: 183 DSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLID 225
                 +VR ++E R    +K    +++ R +T  +A +  LID
Sbjct: 153 TQDAAAWVRSIAEMRGRDAEKAELAVTESRSYTDNQALEFNLID 196


>gi|331699932|ref|YP_004336171.1| enoyl-CoA hydratase [Pseudonocardia dioxanivorans CB1190]
 gi|326954621|gb|AEA28318.1| Enoyl-CoA hydratase [Pseudonocardia dioxanivorans CB1190]
          Length = 248

 Score = 39.6 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 5/33 (15%), Positives = 11/33 (33%)

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
              A  +GL D +G  ++       +     + 
Sbjct: 161 ADRAHALGLADRLGTVDDAIAWAEQMAELAPLT 193


>gi|294011932|ref|YP_003545392.1| ATP-dependent Clp protease protease subunit [Sphingobium japonicum
           UT26S]
 gi|292675262|dbj|BAI96780.1| ATP-dependent Clp protease protease subunit [Sphingobium japonicum
           UT26S]
          Length = 211

 Score = 39.6 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 59/200 (29%), Gaps = 33/200 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGG   +G AI   ++ ++ + 
Sbjct: 38  IIFVTGQVEDHMASLIVAQLLFLESENPKKDIWMYINSPGGVVTSGMAIHDTMKYIRPQV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +                        + + +GS  +    P  +  L    + +     
Sbjct: 98  GTVC---------------------IGQAASMGSFLLAAGEPGKRIALSNARIMVHQPSG 136

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                      +                      L  +      ++    +         
Sbjct: 137 GAQGMASDIEIQAKEILR---------IRSRLNNLYVQYTGRSLEEVERAMDRDTFLEAE 187

Query: 217 EAKKVGLIDVVGGQEEVWQS 236
           EAK  GL+D V  +      
Sbjct: 188 EAKAFGLVDEVFDRRPAMAE 207


>gi|226944447|ref|YP_002799520.1| ATP-dependent Clp protease proteolytic subunit [Azotobacter
           vinelandii DJ]
 gi|226719374|gb|ACO78545.1| Peptidase S14, ClpP [Azotobacter vinelandii DJ]
          Length = 211

 Score = 39.6 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED     ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 43  VIFMVGQVEDYMANLIVAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 102

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L   A+        S +     L  +      ++     I ++  
Sbjct: 103 STICIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAREILTI-- 160

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            ++++     P D            +G 
Sbjct: 161 ----------------------------RERLNKILAHHTGQPIDVIARDTDRDNFMSGE 192

Query: 217 EAKKVGLIDVV 227
           EA K  LID V
Sbjct: 193 EAVKYRLIDQV 203


>gi|284034788|ref|YP_003384719.1| endopeptidase Clp [Kribbella flavida DSM 17836]
 gi|283814081|gb|ADB35920.1| Endopeptidase Clp [Kribbella flavida DSM 17836]
          Length = 192

 Score = 39.6 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 50/175 (28%), Gaps = 32/175 (18%)

Query: 61  SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
           + D  A  + + ++SPGGS  AG AI+  +  + N           +     L   A   
Sbjct: 47  AEDPKAD-ISLYINSPGGSVSAGLAIYDTMNFISNDVATYAMGLVASMGQVLLTCGAPGK 105

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
             +   + +                                             ++   +
Sbjct: 106 RYSLPHARIMMHQPTGGMGG------------------------------TASDIKTQAE 135

Query: 181 VVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234
               +     +L+S+    P +K        R +T  +A + G++D +  Q    
Sbjct: 136 QSLLAKKDLAKLLSKRTGQPEEKVTEDFDRDRWFTPDQAVEYGIVDRILTQPVAV 190


>gi|257439814|ref|ZP_05615569.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Faecalibacterium prausnitzii A2-165]
 gi|257197723|gb|EEU96007.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Faecalibacterium prausnitzii A2-165]
          Length = 198

 Score = 39.6 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 53/181 (29%), Gaps = 26/181 (14%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  ++ ++  +   D    + + ++SPGGS  AG AI   +Q +K     I      +
Sbjct: 39  TSASLVVAQLLYLEGQDPDKDISLYINSPGGSISAGMAIHDTMQYIKCDVSTICMGMAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L         A   S +     L              + I               
Sbjct: 99  MGAFLLAGGTKGKRFALPNSEILIHQPLIGGQGGGLSGQTTDIKIH-------------- 144

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226
                       + +         ++SE    P +K           T  EAK+ GLID 
Sbjct: 145 -----------AEHMVYIRDKMNHMLSEYTGQPLEKIQLDTERDNYMTALEAKEYGLIDE 193

Query: 227 V 227
           V
Sbjct: 194 V 194


>gi|91205226|ref|YP_537581.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii
           RML369-C]
 gi|157827437|ref|YP_001496501.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii
           OSU 85-389]
 gi|91068770|gb|ABE04492.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii
           RML369-C]
 gi|157802741|gb|ABV79464.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii
           OSU 85-389]
          Length = 264

 Score = 39.6 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 61/204 (29%), Gaps = 34/204 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IED  +  +  ++  +  ++    + + ++SPGG   AG AI+  +Q +K + 
Sbjct: 88  IIFVCGPIEDHMANLITAQLLFLEAENPEKDIYMYINSPGGVVTAGLAIYDTMQYIKPKV 147

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L      +  +   S V        Y      ++        +K 
Sbjct: 148 ATLCIGQACSMGSFLLCGGEKGMRYSLPHSRVMIHQPSGGYRGQATDIEIHAQETLKIK- 206

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                                             L S+            +      +  
Sbjct: 207 -----------------------------KILNSLYSKHTGQDVKHVEKSMERDNFMSPE 237

Query: 217 EAKKVGLIDVVGGQEEVWQSLYAL 240
           EAKK G+ID +    +  + L   
Sbjct: 238 EAKKFGIIDKIITHRD-IKLLKDK 260


>gi|251794211|ref|YP_003008942.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
           sp. JDR-2]
 gi|247541837|gb|ACS98855.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. JDR-2]
          Length = 195

 Score = 39.6 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 57/176 (32%), Gaps = 32/176 (18%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           + + +   + D     + + ++SPGGS  AG AI+  +Q +K     I      +  A  
Sbjct: 47  IAQMLFLAAEDPE-KDISLYINSPGGSITAGMAIYDTMQYIKPDVSTICVGMAASMGAFL 105

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     A   S V     L      +     + +  + +     K           
Sbjct: 106 LTAGAIGKRYALPNSEVMIHQPLG---GAEGQASDIEIRARRIIKMRDKLNGIL------ 156

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                                +E    P ++    +D   + +  EA++ GL+D V
Sbjct: 157 ---------------------AERSGQPLERIEKDTDRDYFMSAEEARQYGLVDKV 191


>gi|153810555|ref|ZP_01963223.1| hypothetical protein RUMOBE_00936 [Ruminococcus obeum ATCC 29174]
 gi|149833734|gb|EDM88815.1| hypothetical protein RUMOBE_00936 [Ruminococcus obeum ATCC 29174]
          Length = 223

 Score = 39.6 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 58/208 (27%), Gaps = 53/208 (25%)

Query: 41  IAIRGQIEDSQE----------------LIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           I I+G I  + +                + + +   + D+    L+   +S GGS  AG+
Sbjct: 4   INIKGDIISNDDKWIYDWFEMDATCPRDVTDILNSAAVDEEIEVLV---NSGGGSVMAGQ 60

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            I+ A++    +K  +    +  A +   +   +     +  +++    V          
Sbjct: 61  EIYSALK----QKKNVVIKIQSMAGSAAGVIAMAGKCQMSPVAMIMIHNVSMSGASGDYH 116

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
                                                  +S           R    D+ 
Sbjct: 117 ---------------------------DMQKNAEILKQMNSALAAAYTEKSGR--SLDEI 147

Query: 205 LVLSDGRIW-TGAEAKKVGLIDVVGGQE 231
           L L D   W T  +    G +D +  ++
Sbjct: 148 LKLMDRETWLTANQCLDYGFVDEIMSEQ 175


>gi|75907528|ref|YP_321824.1| ATP-dependent Clp protease proteolytic subunit [Anabaena variabilis
           ATCC 29413]
 gi|115311345|sp|Q3MDK7|CLPP2_ANAVT RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|75701253|gb|ABA20929.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
           variabilis ATCC 29413]
          Length = 197

 Score = 39.6 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 62/187 (33%), Gaps = 33/187 (17%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            +  +I +  ++I  +  +  +D    + + ++SPGG   +G AI+  +Q +K+    I 
Sbjct: 38  DVDDEIAN--QIIAVMLYLDSEDPGKDIYLYINSPGGMVTSGLAIYDTMQHIKSDVVTIC 95

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                +  +  L +      +A   S +               ++     I  ++     
Sbjct: 96  VGLAASMGSFLLAAGTKGKRLALPHSRIMIHQPSGGTRGQATDIEIEAREILRIRH---- 151

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220
                                        ++ + + N P  K     D   + +  EAK+
Sbjct: 152 --------------------------QLNQIYANNTNQPLAKIEKDMDRDFFMSAQEAKE 185

Query: 221 VGLIDVV 227
            GLID V
Sbjct: 186 YGLIDRV 192


>gi|58696873|ref|ZP_00372388.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58699505|ref|ZP_00374232.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630255|ref|YP_002727046.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia sp.
           wRi]
 gi|254763810|sp|C0R2W3|CLPP_WOLWR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|58533978|gb|EAL58250.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58536916|gb|EAL60096.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225592236|gb|ACN95255.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia sp.
           wRi]
          Length = 208

 Score = 39.6 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IED+    ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +    
Sbjct: 29  IIFVTGPIEDNMASVIVAQLLFLESENPDKDICMYINSPGGVVTAGLSIYDTMQYINPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +       +   S +        Y      ++     I  V  
Sbjct: 89  STLCIGQAASMGSLLLAAGTKGKRYSLPHSRIMIHQPSGGYHGQATDIEIHANEILRV-- 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216
                                            ++  +       K   + +  +     
Sbjct: 147 ----------------------------KKKLNQIYEKHTGNSLKKIEGMMERDKFMDPE 178

Query: 217 EAKKVGLIDVV 227
           EA+K+GLID V
Sbjct: 179 EARKIGLIDRV 189


>gi|217967475|ref|YP_002352981.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus
           turgidum DSM 6724]
 gi|217336574|gb|ACK42367.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus
           turgidum DSM 6724]
          Length = 194

 Score = 39.6 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 58/176 (32%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGG   AG AI+  I+ +K +   +      + +A  
Sbjct: 43  IVAQLLFLESEDPEKDIYLYINSPGGEVSAGLAIYDTIRHIKPKVATVCVGQAASMAAIL 102

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L +       A   S V     L         ++     I  +                 
Sbjct: 103 LAAGDKGKRYALPHSRVMIHQPLGGAYGPAADIEIHTREILKI----------------- 145

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                              +++     P +K    +D   + +  EAK+ G++D V
Sbjct: 146 -------------KRVLNEILAYHTGQPIEKIEKDTDRDFFMSAYEAKEYGIVDEV 188


>gi|298290031|ref|YP_003691970.1| peptidase S14 ClpP [Starkeya novella DSM 506]
 gi|296926542|gb|ADH87351.1| peptidase S14 ClpP [Starkeya novella DSM 506]
          Length = 293

 Score = 39.6 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 15/185 (8%), Positives = 53/185 (28%), Gaps = 4/185 (2%)

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           ++      G     + +   ++ + +R   +            +           + ++ 
Sbjct: 59  VIGEDYWSGGGVTAKKVASQLKAIGDRPVEVQINSPGGDMFEGIAIFNVLREHPQDITVK 118

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
                      +    D + +   S             +  N   ++   + ++      
Sbjct: 119 VMGMAASAASIIAMAGDHVEMGAASFLM---IHNCWVLAIGNRHDMRETAEWLEPFDQAM 175

Query: 190 VRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           V L +   +          D   + +G++A + G  D +   +++     A   D++I +
Sbjct: 176 VDLYAARTSQKPADIAKWMDAETYMSGSQAVERGFADALLASDQITTDEKAQSADRNINE 235

Query: 249 IKDWN 253
           ++   
Sbjct: 236 LRAME 240


>gi|332372582|gb|AEE61433.1| unknown [Dendroctonus ponderosae]
          Length = 244

 Score = 39.6 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 63/194 (32%), Gaps = 33/194 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D+    ++ ++  +  +++   + + ++SPGGS  AG  I+  +Q      
Sbjct: 55  IICLMGPIHDTMSSLIVAQLLFLQAENTNKPIHMYINSPGGSVTAGLGIYDTMQ------ 108

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                     A+     +C+   ++ A  S           P ++  L    + I     
Sbjct: 109 ----YCAPPIATWCVGQACSMASLLLASGS-----------PGMRHSLPNARIMIHQPSG 153

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                      +                 +   +L      +  +     +   +  +  
Sbjct: 154 GAQGQATDIQIQAEEIIK---------LKNQINQLYVRHTGLELETIEKNMERDKFMSPV 204

Query: 217 EAKKVGLIDVVGGQ 230
           EAK+ GLID V  +
Sbjct: 205 EAKEFGLIDTVLTR 218


>gi|269203617|ref|YP_003282886.1| phage Clp protease [Staphylococcus aureus subsp. aureus ED98]
 gi|262075907|gb|ACY11880.1| phage Clp protease [Staphylococcus aureus subsp. aureus ED98]
          Length = 257

 Score = 39.6 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 38/221 (17%)

Query: 41  IAIRGQIEDSQELIERI------ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           I I G I   +     +       ++      + + V ++S GGS + G AI+  ++   
Sbjct: 20  IFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHP 79

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
            +      V  +AAS   +I+ + + I   + S +                         
Sbjct: 80  AKIN--IYVDALAASIASVIAMSGDAIFMHKNSFLMIHN--------------------- 116

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213
                             +  +    +  +        + +++++  +    + D   W 
Sbjct: 117 --------SWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWL 168

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           T  EA   GLID + G  E+  S+      +     +D   
Sbjct: 169 TAEEALSFGLIDEILGANEIAASISKEQYKRFENVPEDLKK 209


>gi|225573279|ref|ZP_03782034.1| hypothetical protein RUMHYD_01470 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039411|gb|EEG49657.1| hypothetical protein RUMHYD_01470 [Blautia hydrogenotrophica DSM
           10507]
          Length = 223

 Score = 39.6 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 19/192 (9%), Positives = 64/192 (33%), Gaps = 7/192 (3%)

Query: 43  IRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
           + G I +      ++  ++ +      +  + V ++SPGG   A   I+  +    +   
Sbjct: 1   MNGTIAEESWFDDDVTPQLFKEELMAGSGDITVWINSPGGDCVAAAQIYNMLMDYPHNVT 60

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL--FQYPYVKPFLDKLGVSIKSVK 156
           V  +    +A++   ++    ++      ++ +   +       ++  ++ LG    S+ 
Sbjct: 61  VKIDGIAASAASVIAMAGTRVLVSPVSMMMIHNPMTVAMGDTAEMQKAIEMLGSVKDSII 120

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216
           ++         ++++             +          SR    +     +   +++  
Sbjct: 121 NAYEIKTGLSRAKLSHLMDAETWMDAGKAVELGFADGVLSRAEIPEDIEPPAVSMLYS-K 179

Query: 217 EAKKVGLIDVVG 228
            A    L+D + 
Sbjct: 180 AAVVNSLMDKIA 191


>gi|254242214|ref|ZP_04935536.1| hypothetical protein PA2G_02948 [Pseudomonas aeruginosa 2192]
 gi|126195592|gb|EAZ59655.1| hypothetical protein PA2G_02948 [Pseudomonas aeruginosa 2192]
          Length = 696

 Score = 39.6 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 76/279 (27%), Gaps = 59/279 (21%)

Query: 38  VARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
           VA I +  +I      +Q+    ++ +      + + + + SPGG  + G AI+  ++  
Sbjct: 42  VAEILLYDEIGAWGITAQQFARELKALGD---LSLISLRVHSPGGDVFEGTAIYNLLKHH 98

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
             R      V  +AAS   ++  + ++I   E +++                        
Sbjct: 99  PARVE--GYVDGLAASMATVVLMSCDVIHIPENAMMMVH------------------RPW 138

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
            ++             +                   V           +    L     W
Sbjct: 139 GIQGGEADDMRRYADLLEKIE------------GTMVAAYMAKTGKSEEDIKALLKAETW 186

Query: 214 T-GAEAKKVGLIDVV------------------GGQEEVWQSLYALGVDQSIRKIKDWNP 254
             G EA + G  D +                      E  ++L       +         
Sbjct: 187 MDGREAVEAGFADQLTEPLAAAAQLTSKRMKEFAHMPEALKALMQ-PRASTPAAAAPTPS 245

Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
           P              + +   I   + T+ +G+ AV+ P
Sbjct: 246 PAAPTSQPAPAAPDEAAVRAQINAAENTRREGIRAVFQP 284


>gi|148241165|ref|YP_001226322.1| protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           RCC307]
 gi|147849475|emb|CAK26969.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           RCC307]
          Length = 207

 Score = 39.6 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 54/186 (29%), Gaps = 33/186 (17%)

Query: 43  IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102
           I   I D+  ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q+V      I  
Sbjct: 51  IDDAIADA--VVAQLLYLEAEDPEKEIQIYVNSPGGSVTAGLAIYDTMQQVAPDVVTICY 108

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
               +  A  L        +A   + +     L         ++                
Sbjct: 109 GLAASMGAFLLSGGTKGKRLALPNARIMIHQPLGGAQGQAVDIE---------------- 152

Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKV 221
                         +    +         L++        K           +  EA   
Sbjct: 153 --------------IQAKEILYLKETLNGLMASHTGQDLAKVSEDTDRDYFLSPDEAVAY 198

Query: 222 GLIDVV 227
           GLID V
Sbjct: 199 GLIDRV 204


>gi|160936367|ref|ZP_02083736.1| hypothetical protein CLOBOL_01259 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440650|gb|EDP18388.1| hypothetical protein CLOBOL_01259 [Clostridium bolteae ATCC
           BAA-613]
          Length = 193

 Score = 39.6 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 56/181 (30%), Gaps = 31/181 (17%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  ++ ++  +  +D    + + ++SPGGS  AG AI+  +  +K     I      +
Sbjct: 39  VSASLVVAQLLFLESEDPGKDIHLYINSPGGSVSAGFAIYDTMNYIKCDVSTICIGMAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L   A     A   + +            K    ++ +  +++  +  K      
Sbjct: 99  MGAFLLSGGAKGKRFALPNAEIMIHQPSG---GAKGQATEIKIVAENILKTRKKLNEIL- 154

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226
                                     + +   P +            +  EAK+ GLID 
Sbjct: 155 --------------------------AANTGKPLEVIERDTERDNYMSALEAKEYGLIDE 188

Query: 227 V 227
           +
Sbjct: 189 I 189


>gi|87301613|ref|ZP_01084453.1| Clp protease proteolytic subunit [Synechococcus sp. WH 5701]
 gi|87283830|gb|EAQ75784.1| Clp protease proteolytic subunit [Synechococcus sp. WH 5701]
          Length = 213

 Score = 39.6 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 57/181 (31%), Gaps = 31/181 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  L+ ++  +  +D    + + ++SPGGS  AG AI+  +Q+V      I      +  
Sbjct: 58  ADSLVAQLLFLEAEDPEKDIQIYVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMG 117

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L        +A  ++ +     L         ++                       
Sbjct: 118 AFLLSGGTKGKRMALPSARIMIHQPLGGAQGQAVDIE----------------------- 154

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228
                  +    +         L++E    P  K    +D   + +  EA   GLID V 
Sbjct: 155 -------IQAKEILFLKDTLNGLMAEHTGQPLAKIAEDTDRDYFLSPPEAVSYGLIDRVV 207

Query: 229 G 229
            
Sbjct: 208 D 208


>gi|119356977|ref|YP_911621.1| nodulation efficiency protein NfeD [Chlorobium phaeobacteroides DSM
           266]
 gi|119354326|gb|ABL65197.1| Nodulation efficiency protein NfeD [Chlorobium phaeobacteroides DSM
           266]
          Length = 445

 Score = 39.6 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 70/240 (29%), Gaps = 33/240 (13%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERISR 62
           ++  +   V    + +       SS  +     V+RI ++G +           +    R
Sbjct: 7   IRWSRVFAVRFFFIAVVSAIALISSPADGAENLVSRIVLKGSVNPGSAGFFSRALHDARR 66

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
             S  A++V L +PGG   +  ++ + I        V        A++   +   S  + 
Sbjct: 67  SGS-DAVLVELDTPGGLVSSLRSMVQEIMASPIPVIVYVYPSGAQAASAGALLMLSAHVA 125

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A                                      A P      +     M + VV
Sbjct: 126 AMAPGTEI-----------------------------GAAHPVGAGGKSDGDETMKKKVV 156

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG-QEEVWQSLYALG 241
           +    +   L  +           +++    T  EA + G+ID++     EV   L  + 
Sbjct: 157 NDLAAFARSLAEKRGRNAQWAEKAVTESVSSTAQEALQAGVIDMISDNPSEVLSRLRGMK 216


>gi|237717659|ref|ZP_04548140.1| clp protease [Bacteroides sp. 2_2_4]
 gi|229453061|gb|EEO58852.1| clp protease [Bacteroides sp. 2_2_4]
          Length = 350

 Score = 39.6 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 64/201 (31%), Gaps = 42/201 (20%)

Query: 39  ARIAIRGQIEDSQ-----ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
           A I + G+I +       ++   +           + V ++S GG  + G AIF A ++ 
Sbjct: 26  ACILLYGEIGEYDRVRSGDIARELIEAESASR--QIDVRINSIGGDIFTGMAIFNAFRQS 83

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
                +   +  +AAS G +I+     +  +  + +               +++      
Sbjct: 84  AAD--ITIYIDGVAASMGSVIAACGKPVKMSRYARLMVHSPSGGAYGNAGEMEE------ 135

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGR- 211
                                      ++ S       + +       ++      DG+ 
Sbjct: 136 ------------------------TAGMLKSLEDTLCEIYAARCKKTKEEIRSEWFDGKD 171

Query: 212 -IWTGAEAKKVGLIDVVGGQE 231
             +T  +A ++GL+D +   +
Sbjct: 172 HWFTARQAVELGLVDEIYDAD 192


>gi|242819717|ref|XP_002487374.1| enoyl-CoA hydratase/isomerase family protein [Talaromyces
           stipitatus ATCC 10500]
 gi|218713839|gb|EED13263.1| enoyl-CoA hydratase/isomerase family protein [Talaromyces
           stipitatus ATCC 10500]
          Length = 269

 Score = 39.6 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 31/79 (39%)

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           + +G+ +T  EA +  ++D +G   +  Q +   G+ +           +  W   + ++
Sbjct: 174 IIEGKRYTAQEALQAKIVDGLGDLTDAVQLVLDRGLLKIASSPAFVAMKERLWADVVDSI 233

Query: 267 SISSLLEDTIPLMKQTKVQ 285
              +  ++   L  +  V 
Sbjct: 234 DSLAAHDEADELKAKRTVD 252


>gi|326790230|ref|YP_004308051.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium
           lentocellum DSM 5427]
 gi|326540994|gb|ADZ82853.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           lentocellum DSM 5427]
          Length = 193

 Score = 39.6 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 50/178 (28%), Gaps = 29/178 (16%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    ++  ++SPGGS   G AI+  +Q +K     I      +  A  
Sbjct: 44  IVAQLLFLEAEDPDKDIMFYINSPGGSITDGMAIYDTMQYIKCDVSTICMGMAASMGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L         A   + V     L          D    +   +K+              P
Sbjct: 104 LAGGTKGKRFALPNAEVMIHQPLGGAKGQAT--DIQITAQHIIKTKERMNRMLSEFTGQP 161

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                     D+                             T  EAK+ GLID +   
Sbjct: 162 IERINNDVERDNWK---------------------------TAEEAKEYGLIDDIITS 192


>gi|257784419|ref|YP_003179636.1| Endopeptidase Clp [Atopobium parvulum DSM 20469]
 gi|257472926|gb|ACV51045.1| Endopeptidase Clp [Atopobium parvulum DSM 20469]
          Length = 202

 Score = 39.6 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 50/180 (27%), Gaps = 31/180 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +I ++  +   D    + + + SPGG  YAG  I   +  +K     I      + SA  
Sbjct: 50  VIAQLLHLESQDPDKDISLYIDSPGGDVYAGLGILDTMNFIKPDVSTICVGMAASMSAVL 109

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A    +A   S+V            +  +  +    K +                 
Sbjct: 110 LAAGAKGKRLALPNSMVMIHQPSSGVQGQQTDIQIVADETKWI----------------- 152

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231
                              L+S+      +K              EA   GL+D V    
Sbjct: 153 -------------REHINELLSDYTGQSIEKVNVDTERDNYLRAQEACDYGLVDRVISSR 199


>gi|146284202|ref|YP_001174355.1| hypothetical protein PST_3890 [Pseudomonas stutzeri A1501]
 gi|145572407|gb|ABP81513.1| membrane protein, putative [Pseudomonas stutzeri A1501]
          Length = 458

 Score = 39.6 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 65/219 (29%), Gaps = 26/219 (11%)

Query: 30  HVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
                +  V  + + G I    +  ++  ++    D+ A  +++ L +PGG   +  AI 
Sbjct: 19  QSASAADPVTLLRVDGAIGPASADYILRGLQHAR-DEGAQLVVLELDTPGGLDTSMRAII 77

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
           +AI                                +A T ++ +  V    P        
Sbjct: 78  KAILASPIPVATYVTPS-------------GARAASAGTYMLYASHVAAMAPGTNLGAA- 123

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV---SESRNIPYD-K 203
              +   +   P      P  E    A      +     +     +   ++ R    +  
Sbjct: 124 ---TPVQIGGMPGAPPEQPKGEREDDAKASGDALARKQVNDAAAYIRGLAQLRERNAEWA 180

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              + +    + +EA K+ +ID +    +V   L  L  
Sbjct: 181 EQAVREAVSLSASEALKLKVIDYLA--RDVADLLRQLDG 217


>gi|322515314|ref|ZP_08068311.1| ATP-dependent Clp protease, protease subunit [Actinobacillus ureae
           ATCC 25976]
 gi|322118690|gb|EFX90902.1| ATP-dependent Clp protease, protease subunit [Actinobacillus ureae
           ATCC 25976]
          Length = 217

 Score = 39.6 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 73/234 (31%), Gaps = 33/234 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIE 58
           + F ++  K   + + +   +    S+  +       +  I + G++ED  +  ++ ++ 
Sbjct: 13  LRFRIRNPKMAVIPMVVEQTSKGERSYDIYSRLLKERI--IFLNGEVEDHMANLIVAQLL 70

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118
            +  +D    + + ++SPGG   AG AI+  +  +K     +      +  A  L   A 
Sbjct: 71  FLESEDPEKDIYLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGAK 130

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
               A   + V     L                           +    ++   K  +M+
Sbjct: 131 GKRFALPHARVMIHQPLGGARG-------------------QATDIQIQAQEILKLKEML 171

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
              +          V+                   +  EA + GLID V    +
Sbjct: 172 TKRMAGHSGQPFEKVAA----------DTERDNFMSAFEAAEYGLIDKVLTHRD 215


>gi|148267495|ref|YP_001246438.1| peptidase S14, ClpP [Staphylococcus aureus subsp. aureus JH9]
 gi|150393549|ref|YP_001316224.1| peptidase S14 ClpP [Staphylococcus aureus subsp. aureus JH1]
 gi|282927349|ref|ZP_06334967.1| peptidase S14, ClpP [Staphylococcus aureus A10102]
 gi|147740564|gb|ABQ48862.1| peptidase S14, ClpP [Staphylococcus aureus subsp. aureus JH9]
 gi|149946001|gb|ABR51937.1| peptidase S14 ClpP [Staphylococcus aureus subsp. aureus JH1]
 gi|282590673|gb|EFB95749.1| peptidase S14, ClpP [Staphylococcus aureus A10102]
          Length = 257

 Score = 39.6 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 38/221 (17%)

Query: 41  IAIRGQIEDSQELIERI------ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           I I G I   +     +       ++      + + V ++S GGS + G AI+  ++   
Sbjct: 20  IFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHP 79

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
            +      V  +AAS   +I+ + + I   + S +                         
Sbjct: 80  AKIN--IYVDALAASIASVIAMSGDTIFMHKNSFLMIHN--------------------- 116

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213
                             +  +    +  +        + +++++  +    + D   W 
Sbjct: 117 --------SWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWL 168

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           T  EA   GLID + G  E+  S+      +     +D   
Sbjct: 169 TAEEALSFGLIDEILGANEITASISKEQYKRFENVPEDLKK 209


>gi|218245804|ref|YP_002371175.1| ATP-dependent Clp protease-like protein [Cyanothece sp. PCC 8801]
 gi|257058850|ref|YP_003136738.1| ATP-dependent Clp protease-like protein [Cyanothece sp. PCC 8802]
 gi|16506759|gb|AAL23932.1|AF423176_1 hypothetical protein [Cyanothece sp. PCC 8801]
 gi|218166282|gb|ACK65019.1| Endopeptidase Clp [Cyanothece sp. PCC 8801]
 gi|256589016|gb|ACU99902.1| Endopeptidase Clp [Cyanothece sp. PCC 8802]
          Length = 226

 Score = 39.6 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 73/212 (34%), Gaps = 33/212 (15%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSP 76
           ++ L +  FS     +              I+ +Q +I ++  +  DD    +   ++S 
Sbjct: 32  IIYLGMPLFSSDDVKQQVG-----------IDVTQLIIAQLLYLQFDDPDKPIYFYINST 80

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           G S Y G+AI    +        I +         + I     +  AA     G+ G   
Sbjct: 81  GTSWYTGDAIGFETEAFA-----ICDTMNYVKPPIHTICIGQAMGTAAMILSAGTKGCRA 135

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
             P+    L++     +                     +Q+    V S+    + + S++
Sbjct: 136 SLPHATIVLNQNRSGARG----------------QATDIQIRAKEVLSNKQTMLEIFSKN 179

Query: 197 RNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
              P +K    +D   + T  +AK+ GLID V
Sbjct: 180 TGQPVEKIAKDTDRTFYLTPQQAKEYGLIDRV 211


>gi|257468340|ref|ZP_05632434.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           ulcerans ATCC 49185]
 gi|317062614|ref|ZP_07927099.1| endopeptidase Clp [Fusobacterium ulcerans ATCC 49185]
 gi|313688290|gb|EFS25125.1| endopeptidase Clp [Fusobacterium ulcerans ATCC 49185]
          Length = 191

 Score = 39.6 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  +I+D  +  ++ ++  +  +D    +I+ ++SPGG   AG AI+  +  +K   
Sbjct: 28  IIFLGTEIDDNVANAIVAQLLFLEAEDPDKDIIMYINSPGGVVTAGMAIYDTMNYIKPDV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A     A E S +     L         ++           
Sbjct: 88  QTVCIGQAASMGALLLGAGAKGKRYALEHSRIMIHQPLGGARGQATDIE----------- 136

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                              +    +        +++++       +           +  
Sbjct: 137 -------------------IQAKEILRMKEMLSQIMADCTGKSLSEILNDTERDNYMSAE 177

Query: 217 EAKKVGLIDVV 227
           EAK  GLID V
Sbjct: 178 EAKNYGLIDQV 188


>gi|15618431|ref|NP_224716.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           pneumoniae CWL029]
 gi|15836051|ref|NP_300575.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           pneumoniae J138]
 gi|16752522|ref|NP_444784.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           pneumoniae AR39]
 gi|33241872|ref|NP_876813.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           pneumoniae TW-183]
 gi|6831515|sp|Q9Z832|CLPP1_CHLPN RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|4376809|gb|AAD18660.1| CLP Protease [Chlamydophila pneumoniae CWL029]
 gi|7189161|gb|AAF38099.1| ATP-dependent Clp protease, proteolytic subunit [Chlamydophila
           pneumoniae AR39]
 gi|8978891|dbj|BAA98726.1| CLP protease [Chlamydophila pneumoniae J138]
 gi|33236381|gb|AAP98470.1| endopeptidase [Chlamydophila pneumoniae TW-183]
 gi|269303395|gb|ACZ33495.1| Clp protease [Chlamydophila pneumoniae LPCoLN]
          Length = 191

 Score = 39.6 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 59/180 (32%), Gaps = 29/180 (16%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
            + + I+++  +   D    ++  ++SPGGS  AG A++  I+ + +    +      + 
Sbjct: 33  SASDAIKKLWYLELKDPGKPIVFVINSPGGSVDAGFAVWDQIKMLTSPVTTVVTGLAASM 92

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
            +   +  A     A   S +         P      D    + + +             
Sbjct: 93  GSVLSLCAAPGRRFATPHSRIMIHQPSIGGPITGQATDLDIHAREIL------------- 139

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                           +    + +  E+ N P D      D  +W T  EAK  GL+D +
Sbjct: 140 ---------------KTKARIIDVYVEATNQPRDIIEKAIDRDMWMTANEAKDFGLLDGI 184


>gi|87124411|ref|ZP_01080260.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RS9917]
 gi|86167983|gb|EAQ69241.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RS9917]
          Length = 196

 Score = 39.6 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 61/184 (33%), Gaps = 31/184 (16%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
            +  ++ ++  +  +D    + + ++SPGGS Y G  IF  +Q +K     +      + 
Sbjct: 38  SANRIVAQLLFLEAEDPDKDIYLYINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASM 97

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
            A  L + A     + + S +     L      +     + +    +     K       
Sbjct: 98  GAFLLCAGAKGKRSSLQHSRIMIHQPLG---GARGQASDIRIQADEILFLKDK------- 147

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                                 R ++E    P +K  V +D   + +  +A   GLID V
Sbjct: 148 --------------------LNRELAERSGQPLEKIQVDTDRDFFMSPQDAVSYGLIDSV 187

Query: 228 GGQE 231
             + 
Sbjct: 188 IDRR 191


>gi|325914991|ref|ZP_08177323.1| protease subunit of ATP-dependent protease [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538884|gb|EGD10548.1| protease subunit of ATP-dependent protease [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 233

 Score = 39.6 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 71/194 (36%), Gaps = 38/194 (19%)

Query: 36  PHVARIAIRGQIEDS--QELIERIERISRDDSATA--LIVSLSSPGGSAYAGEAIFRAIQ 91
             VA + I G I DS   E +  +E   + +  TA  + V ++S GG    G AI+ A+ 
Sbjct: 24  NDVAEVMIYGTIGDSLWSESVSALELAEQINQITASTIHVRINSGGGVVADGIAIYNALS 83

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           +    K  +  V   AAS   LI+ A N +V   +SL+                      
Sbjct: 84  QHAAHK--VVFVDGQAASIASLIAMAGNEVVMYASSLLMVHA------------------ 123

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
             ++ +    +     + ++  A               +   +       +   +L+DG 
Sbjct: 124 PHTIAAGNASSFRQYATALDAHA------------GAMLEAYATKTGKRSEVEQLLTDGA 171

Query: 212 --IWTGAEAKKVGL 223
              +TGA+A + G 
Sbjct: 172 DHWYTGAQAVEFGF 185


>gi|253999170|ref|YP_003051233.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylovorus
           sp. SIP3-4]
 gi|313201272|ref|YP_004039930.1| ATP-dependent clp protease, proteolytic subunit clpp [Methylovorus
           sp. MP688]
 gi|253985849|gb|ACT50706.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylovorus
           sp. SIP3-4]
 gi|312440588|gb|ADQ84694.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylovorus
           sp. MP688]
          Length = 208

 Score = 39.6 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 59/198 (29%), Gaps = 34/198 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 40  VIFLVGPVNDMTANLVVAQLLFLEAENPDKDISLYINSPGGSVTAGMAIYDTMQFIKPDV 99

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A +       S V     L  +      ++           
Sbjct: 100 STLCIGQAASMGALLLTAGAKDKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKE------ 153

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         +++     P D            +  
Sbjct: 154 ------------------------ILYLREKLNLILASHTGQPVDVIERDTDRDNFMSAQ 189

Query: 217 EAKKVGLIDV-VGGQEEV 233
           ++   GL+D  +  + + 
Sbjct: 190 QSVNYGLVDKVIASRTDA 207


>gi|256829383|ref|YP_003158111.1| Nodulation efficiency protein NfeD [Desulfomicrobium baculatum DSM
           4028]
 gi|256578559|gb|ACU89695.1| Nodulation efficiency protein NfeD [Desulfomicrobium baculatum DSM
           4028]
          Length = 489

 Score = 39.6 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 71/216 (32%), Gaps = 14/216 (6%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGG-SAYA 82
              +   D       + +   I  +    ++  I R  + + A  +++ L++PGG  A  
Sbjct: 27  FVFAQEADTGRRGYVLTVDDAIGPATRDHIVRNITRAEK-EGAEVVVLRLNTPGGLDASM 85

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ----- 137
            + I + +         +      AASAG  I  AS+I   A  + +GS   +       
Sbjct: 86  RDIIRKILASEVPVVTWVAPAGSRAASAGTYIMYASHIAAMAPATNLGSATPVQIGGGES 145

Query: 138 --YPYVKPFLDKLGVSIKSVKSSPMKAEPS---PFSEVNPKAVQMMQDVVDSSYHWFVRL 192
              P       +    ++         E     P    N     M + VV+ +  +   L
Sbjct: 146 DKSPSSWERAREAMEKMRDGDEGANATEQPENLPEEPENLPDDAMGRKVVNDAVAYIKGL 205

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
                         + +    T +EA +  ++DVV 
Sbjct: 206 AERHARNAEWAERAVREAVSLTASEALEQRVVDVVA 241


>gi|66395603|ref|YP_239937.1| ORF015 [Staphylococcus phage 3A]
 gi|62635949|gb|AAX91060.1| ORF015 [Staphylococcus phage 3A]
          Length = 257

 Score = 39.6 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 38/221 (17%)

Query: 41  IAIRGQIEDSQELIERI------ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           I I G I   +     +       ++      + + V ++S GGS + G AI+  ++   
Sbjct: 20  IFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHP 79

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
            +      V  +AAS   +I+ + + I   + S +                         
Sbjct: 80  AKIN--IYVDALAASIASVIAMSGDTIFMHKNSFLMIHN--------------------- 116

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213
                             +  +    +  +        + +++++  +    + D   W 
Sbjct: 117 --------SWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWL 168

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           T  EA   GLID + G  E+  S+      +     +D   
Sbjct: 169 TAEEALSFGLIDEILGANEITASISKEQYKRFENVPEDLKK 209


>gi|291614263|ref|YP_003524420.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sideroxydans
           lithotrophicus ES-1]
 gi|291584375|gb|ADE12033.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sideroxydans
           lithotrophicus ES-1]
          Length = 208

 Score = 39.6 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 62/193 (32%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G++ D     ++ ++  +  ++    +   ++SPGGS  AG AI+  +Q +K + 
Sbjct: 43  VVFLVGEVNDHTANLIVAQMLFLESENPDKDIHFYINSPGGSISAGMAIYDTMQFIKPQV 102

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A     A   S V     L  +      ++           
Sbjct: 103 STLCIGMAASMGAFLLQAGAKGKRFALPNSTVMIHQPLGGFRGQASDIE----------- 151

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                              +    + S       L+++      ++           +  
Sbjct: 152 -------------------IHARYILSLRERLYALMAQHTGRTVEEIARDSERDNFLSAK 192

Query: 217 EAKKVGLIDVVGG 229
           EA + GL+D V  
Sbjct: 193 EAVEYGLVDQVLD 205


>gi|254503279|ref|ZP_05115430.1| 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family
           [Labrenzia alexandrii DFL-11]
 gi|222439350|gb|EEE46029.1| 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family
           [Labrenzia alexandrii DFL-11]
          Length = 696

 Score = 39.6 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 72/264 (27%), Gaps = 47/264 (17%)

Query: 35  SPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
             ++A I I     ++        L +    I+ +D+  A++V        A        
Sbjct: 11  EDNIAVIEIANPPVNALSHAVRSGLQDAFRGIAENDAIKAIVVY------GAGRTFVAGA 64

Query: 89  AIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
            I++  +  K            +      AS         L  ++G  ++    K  L  
Sbjct: 65  DIREFGQPPKEPFLPELINEIESCTRPVIASVHGTVLGGGLELALGAHYRIAAPKTKLGL 124

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
             VS+  +  +           V                                   ++
Sbjct: 125 PEVSLGLLPGAGGTQRLPRLVPVT------------------------------KAIDMI 154

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEV----WQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
           + G+  +  EA ++GLID + G++++         AL    +  +     P         
Sbjct: 155 TSGKPVSANEALELGLIDQISGEDDMRAAGLAYAKALVKQGAGPRPVSGLPCNTPEDGLF 214

Query: 264 KNLSISSLLEDTIPLMKQTKVQGL 287
                +   +    L  Q  +  +
Sbjct: 215 DKARATLAKKARGQLASQKCIDAI 238


>gi|229494115|ref|ZP_04387878.1| putative enoyl-CoA hydratase [Rhodococcus erythropolis SK121]
 gi|229318477|gb|EEN84335.1| putative enoyl-CoA hydratase [Rhodococcus erythropolis SK121]
          Length = 290

 Score = 39.6 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 19/219 (8%), Positives = 57/219 (26%), Gaps = 28/219 (12%)

Query: 36  PHVARIAIRGQIEDSQE-------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIF- 87
             VA + +      + +       L    +R   DD    ++++ + P  SA     +  
Sbjct: 16  DSVAVVTLNRPDYRNAQNSVVTYALDAAFQRAVEDDDVKVIVLAGNGPHFSAGH--DLGT 73

Query: 88  ----RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                 ++           V +      +       + +      +    +         
Sbjct: 74  PGRDHHVEYENKATMWWNHVDKPGGDQRFAREMEVYLGMCRRWREIPKPTIAMVQGACIA 133

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
               L      + ++       P   +             +         ++        
Sbjct: 134 GGLMLAWVCDMIVAADDAFFSDPVVRMGIPG-----VEYFAHPWMVGSRFAK-------- 180

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             +L  G  +T   A ++G+++ V  ++ + +  + L  
Sbjct: 181 -EMLFTGDRFTAQRAYEIGMVNRVVARKHLEKETFELAG 218


>gi|254512409|ref|ZP_05124476.1| Clp protease [Rhodobacteraceae bacterium KLH11]
 gi|221536120|gb|EEE39108.1| Clp protease [Rhodobacteraceae bacterium KLH11]
          Length = 196

 Score = 39.6 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G I D     ++ ++  +  ++    + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 24  IIFINGPIHDGMSHLVVAQLLHLEAENPNKEISIYINSPGGVVTSGLSIYDTMQYIKPK- 82

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                           +       + +     G  G+ F  P  +  + +     +    
Sbjct: 83  -------------CSTLVIGQAASMGSVLLAGGEKGMRFSLPNSRIMVHQPSGGYQG--- 126

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
               ++    +    K    + D+         + V +           L      +  E
Sbjct: 127 --QASDIMIHAAETQKLKDRLYDIYVRHTGQTKKAVEK----------ALDRDNFMSPEE 174

Query: 218 AKKVGLIDVV 227
           AK  G ID +
Sbjct: 175 AKDWGHIDEI 184


>gi|86606575|ref|YP_475338.1| S49 family peptidase [Synechococcus sp. JA-3-3Ab]
 gi|86555117|gb|ABD00075.1| peptidase S49 (protease IV) family, nonpeptidase-like protein
           [Synechococcus sp. JA-3-3Ab]
          Length = 285

 Score = 39.6 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 69/186 (37%), Gaps = 22/186 (11%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS++++  I     +     ++    +PGG   A E I RA+ +   +  V   V   
Sbjct: 67  IEDSEQVLRAIRLTPPNTPIDLIL---HTPGGLVLATEQIARALIRHPAK--VTVFVPHY 121

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           A S G +++ A++ IV    +++G +            L       + V   P+      
Sbjct: 122 AMSGGTMLALAADEIVMDANAVLGPVDPQLGGYAAASIL-------QVVAEKPIAEIDDQ 174

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL---------VLSDGRIWTGAE 217
              +   A + MQ V +         V   R I  ++            ++     T  E
Sbjct: 175 TLILADLARKAMQQVQNFVRDLLKDDV-PKRKIAPERIEPLIQYLTSGQVTHDYPITAEE 233

Query: 218 AKKVGL 223
           A+++GL
Sbjct: 234 AQRLGL 239


>gi|328767510|gb|EGF77559.1| hypothetical protein BATDEDRAFT_91564 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 251

 Score = 39.6 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 61/190 (32%), Gaps = 24/190 (12%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+++DS    ++ ++  +  ++    +   ++SPGGS  AG AI+    +     
Sbjct: 46  IVMLNGEVDDSVSAIIVAQLLFLEAENPEKPISFYINSPGGSVTAGMAIYDTYIQSP--- 102

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                       A  + S           S++ +  V+   P       +  +   +   
Sbjct: 103 ----VATVCMGQACSMGSLLLTAGEPGHRSILPNARVMIHQPR------QAIIVYTTFGG 152

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
           +  +A            ++   + +   +      V  +R                +  +
Sbjct: 153 ASGQASDIAIHAKEILDIRERLNQIYVHHTHQSLDVIVNRMERD---------HFMSAEQ 203

Query: 218 AKKVGLIDVV 227
           A   GL+D V
Sbjct: 204 ALTFGLVDKV 213


>gi|157124223|ref|XP_001660372.1| endopeptidase clp, putative [Aedes aegypti]
 gi|108882807|gb|EAT47032.1| endopeptidase clp, putative [Aedes aegypti]
          Length = 225

 Score = 39.6 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D     ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q VK   
Sbjct: 53  IICLMGPIHDDLSSLIVAQLLFLQSENGTKPIHMYINSPGGSVTAGLAIYDTMQYVKPPV 112

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
                    +  +  L + A  +  +   + +       
Sbjct: 113 ATWCVGQACSMGSLLLAAGAPGMRHSLPNARIMIHQPSG 151


>gi|32472152|ref|NP_865146.1| hypothetical protein RB2785 [Rhodopirellula baltica SH 1]
 gi|32397524|emb|CAD72830.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
          Length = 770

 Score = 39.6 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 31/261 (11%), Positives = 80/261 (30%), Gaps = 10/261 (3%)

Query: 40  RIAIRGQIEDSQELIERIERIS--RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G I  S+    +    +          +V++ SPGG+     ++  ++       
Sbjct: 325 LVRVTGNITGSRVRRWQSNLAASIDSPDVNTWLVAIDSPGGNLNRSASLAASLADPGIAI 384

Query: 98  PVI--TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
             +      E    A  +      ++++ E ++ GS         V+   + + +  +S 
Sbjct: 385 QSVGGWVTGEARGDAALIALACQPLLMSPEATIGGSGADAMSADDVRRQSELIDMIAEST 444

Query: 156 KSSP--MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
             S   ++    P   V+    +    V  ++     +  +E     + +   +      
Sbjct: 445 GRSAALIRGMLDPSISVHRYVHRRSGRVRYATSEQIRQESNEDAPSDWQRMEKVELATGL 504

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS---IRKIKDWNPPKNYWFCDLKNLS-IS 269
             A+A ++GL +      +   S   L         R +  W            +L  I 
Sbjct: 505 NAAQAIELGLAEATAESLQTAASSVGLNEVPPELSDRGLVRWVERLGGQTGLAMSLLVIG 564

Query: 270 SLLEDTIPLMKQTKVQGLWAV 290
            ++           + G  ++
Sbjct: 565 FMMLSIEASAPGLGLPGFISL 585


>gi|315655111|ref|ZP_07908013.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii
           ATCC 51333]
 gi|315657031|ref|ZP_07909916.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315490592|gb|EFU80215.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii
           ATCC 51333]
 gi|315492423|gb|EFU82029.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 236

 Score = 39.6 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 61/180 (33%), Gaps = 28/180 (15%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D  + + + ++SPGGS  A  AI+  +Q +K     +      +
Sbjct: 75  ASADDVMAQLLVLESQDPDSLITMYINSPGGSFTAMTAIYDTMQYIKPEIQTVCLGQAAS 134

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L   A    +A   + V       Q    +     +      +     +      
Sbjct: 135 AAAVLLAGGAPGKRLALPNARVLIHQPAIQGAQGQATDLAI------IAEEIDRMRAWLE 188

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
             ++  + + ++ +                         +   +I T  +A + GLID V
Sbjct: 189 ETLSKHSKRSVEQMH----------------------EDIDRDKILTAPQALEYGLIDQV 226


>gi|311695076|gb|ADP97949.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine
           bacterium HP15]
          Length = 201

 Score = 39.6 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 63/192 (32%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 33  VIFMVGPVEDHMANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A+        S V     L  Y      ++     I  +  
Sbjct: 93  ATLCVGQAASMGAFLLAGGAAGKRACLPNSRVMIHQPLGGYQGQATDIEIHTREILKI-- 150

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                               +  ++       +  +++                    A+
Sbjct: 151 -----------------RHTLNSILAHHTGQDLETIAK----------DTDRDNFMDPAQ 183

Query: 218 AKKVGLIDVVGG 229
           AK+ GLID +  
Sbjct: 184 AKEYGLIDSILD 195


>gi|257065888|ref|YP_003152144.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerococcus
           prevotii DSM 20548]
 gi|256797768|gb|ACV28423.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerococcus
           prevotii DSM 20548]
          Length = 197

 Score = 39.6 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D  S  +I ++  +  +D    +   ++SPGG   +G AI+  +  +K   
Sbjct: 33  IIFLSGEVRDEISDIIIAQLLFLESEDPDKDIQFYINSPGGVVTSGLAIYDTMNYIKPDV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L S A     +  +S +                            
Sbjct: 93  STICIGQAASMAAVLLSSGAKGKRYSLPSSNIMIHQPSGGAQGQ---------------- 136

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGA 216
                            + +  + +        +++S++      K    +D     T A
Sbjct: 137 --------------ASDIVIQAEQIIKIKERLNKILSDNTGQSLKKIEKDTDRDFAMTAA 182

Query: 217 EAKKVGLIDVV 227
           EA + GLID V
Sbjct: 183 EALEYGLIDKV 193


>gi|163790237|ref|ZP_02184670.1| hypothetical protein CAT7_04934 [Carnobacterium sp. AT7]
 gi|159874512|gb|EDP68583.1| hypothetical protein CAT7_04934 [Carnobacterium sp. AT7]
          Length = 246

 Score = 39.6 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 84/236 (35%), Gaps = 21/236 (8%)

Query: 40  RIAIRGQIE-----DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
            + + G I      D + +  ++   S D     +++ L+S GG  + G  I+  ++   
Sbjct: 21  ILTLSGTIRQRYWDDDKSIDAKLVSDSLDGVTDDIVIYLNSTGGDVFQGIEIYNYLKNH- 79

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV---LFQYPYVKPFLDKLGVS 151
           +    +      A++A ++++ A   I+   TS +              +K  L+ L   
Sbjct: 80  SSHITVEVTGTAASAATFIVAGADEAIMNTGTSFMIHEASSFAWGNKADLKKTLNALETI 139

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW-FVRLVSESRNIPYDKTLVLSDG 210
            +S+ +   +       ++N    +      + +  + F   V E++    D+   ++  
Sbjct: 140 DESIIAIYTEKTGQSNEQLNDWMEEEKWFTAEEAVKYGFANKVKENKKDITDQID-IAAM 198

Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
              + A+A +              Q+       + + ++K+  P +      L+  
Sbjct: 199 INQSVAQAMEQF----------SAQATSKKHSIEKLNELKNEKPKQKSLLNKLRKG 244


>gi|15900641|ref|NP_345245.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae TIGR4]
 gi|15902700|ref|NP_358250.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae R6]
 gi|111657500|ref|ZP_01408244.1| hypothetical protein SpneT_02001290 [Streptococcus pneumoniae
           TIGR4]
 gi|116516216|ref|YP_816144.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae D39]
 gi|148985320|ref|ZP_01818543.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP3-BS71]
 gi|148989824|ref|ZP_01821118.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP6-BS73]
 gi|148992407|ref|ZP_01822102.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP9-BS68]
 gi|148997179|ref|ZP_01824833.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|149003358|ref|ZP_01828247.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP14-BS69]
 gi|149007624|ref|ZP_01831241.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP18-BS74]
 gi|149020386|ref|ZP_01835278.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP23-BS72]
 gi|168484851|ref|ZP_02709796.1| Clp protease [Streptococcus pneumoniae CDC1873-00]
 gi|168486762|ref|ZP_02711270.1| Clp protease [Streptococcus pneumoniae CDC1087-00]
 gi|168488414|ref|ZP_02712613.1| Clp protease [Streptococcus pneumoniae SP195]
 gi|168490833|ref|ZP_02714976.1| Clp protease [Streptococcus pneumoniae CDC0288-04]
 gi|168492895|ref|ZP_02717038.1| Clp protease [Streptococcus pneumoniae CDC3059-06]
 gi|168575405|ref|ZP_02721341.1| Clp protease [Streptococcus pneumoniae MLV-016]
 gi|169832484|ref|YP_001694209.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae Hungary19A-6]
 gi|182683666|ref|YP_001835413.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae CGSP14]
 gi|221231543|ref|YP_002510695.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae ATCC 700669]
 gi|225854255|ref|YP_002735767.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae JJA]
 gi|225860721|ref|YP_002742230.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|237650410|ref|ZP_04524662.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae CCRI 1974]
 gi|237822478|ref|ZP_04598323.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|298230046|ref|ZP_06963727.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255823|ref|ZP_06979409.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502532|ref|YP_003724472.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae TCH8431/19A]
 gi|303255838|ref|ZP_07341879.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS455]
 gi|303260009|ref|ZP_07345983.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|303261415|ref|ZP_07347363.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264082|ref|ZP_07350003.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS397]
 gi|303267620|ref|ZP_07353460.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS457]
 gi|303269546|ref|ZP_07355310.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS458]
 gi|307067350|ref|YP_003876316.1| ATp-dependent Clp protease [Streptococcus pneumoniae AP200]
 gi|307127702|ref|YP_003879733.1| Clp protease [Streptococcus pneumoniae 670-6B]
 gi|54036855|sp|P63788|CLPP_STRR6 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|54040893|sp|P63787|CLPP_STRPN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122278970|sp|Q04LF4|CLPP_STRP2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706476|sp|B1IAS4|CLPP_STRPI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706544|sp|B2INC9|CLPP_STRPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763803|sp|B8ZN39|CLPP_STRPJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763805|sp|C1CD96|CLPP_STRZJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763807|sp|C1CQK8|CLPP_STRZT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|14972220|gb|AAK74885.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus
           pneumoniae TIGR4]
 gi|15458242|gb|AAK99460.1| ATP-dependent CLP protease proteolytic subunit [Streptococcus
           pneumoniae R6]
 gi|116076792|gb|ABJ54512.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae D39]
 gi|147756879|gb|EDK63919.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|147758541|gb|EDK65539.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP14-BS69]
 gi|147760779|gb|EDK67750.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP18-BS74]
 gi|147922518|gb|EDK73637.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP3-BS71]
 gi|147924766|gb|EDK75850.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP6-BS73]
 gi|147928724|gb|EDK79737.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP9-BS68]
 gi|147930688|gb|EDK81670.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP23-BS72]
 gi|168994986|gb|ACA35598.1| Clp protease [Streptococcus pneumoniae Hungary19A-6]
 gi|172042007|gb|EDT50053.1| Clp protease [Streptococcus pneumoniae CDC1873-00]
 gi|182629000|gb|ACB89948.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae CGSP14]
 gi|183570255|gb|EDT90783.1| Clp protease [Streptococcus pneumoniae CDC1087-00]
 gi|183572984|gb|EDT93512.1| Clp protease [Streptococcus pneumoniae SP195]
 gi|183574558|gb|EDT95086.1| Clp protease [Streptococcus pneumoniae CDC0288-04]
 gi|183577054|gb|EDT97582.1| Clp protease [Streptococcus pneumoniae CDC3059-06]
 gi|183578670|gb|EDT99198.1| Clp protease [Streptococcus pneumoniae MLV-016]
 gi|220674003|emb|CAR68516.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus pneumoniae ATCC 700669]
 gi|225723038|gb|ACO18891.1| Clp protease [Streptococcus pneumoniae JJA]
 gi|225727276|gb|ACO23127.1| Clp protease [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238127|gb|ADI69258.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae TCH8431/19A]
 gi|301793906|emb|CBW36302.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus pneumoniae INV104]
 gi|301799764|emb|CBW32333.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus pneumoniae OXC141]
 gi|301801594|emb|CBW34292.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus pneumoniae INV200]
 gi|302597222|gb|EFL64327.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS455]
 gi|302637549|gb|EFL68036.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638928|gb|EFL69389.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|302640931|gb|EFL71314.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS458]
 gi|302642850|gb|EFL73157.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS457]
 gi|302646487|gb|EFL76713.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS397]
 gi|306408887|gb|ADM84314.1| Protease subunit of ATP-dependent Clp proteases [Streptococcus
           pneumoniae AP200]
 gi|306484764|gb|ADM91633.1| Clp protease [Streptococcus pneumoniae 670-6B]
 gi|327390104|gb|EGE88447.1| clp protease family protein [Streptococcus pneumoniae GA04375]
 gi|332073128|gb|EGI83607.1| clp protease family protein [Streptococcus pneumoniae GA17570]
 gi|332076026|gb|EGI86492.1| clp protease family protein [Streptococcus pneumoniae GA41301]
 gi|332077163|gb|EGI87625.1| clp protease family protein [Streptococcus pneumoniae GA17545]
 gi|332202611|gb|EGJ16680.1| clp protease family protein [Streptococcus pneumoniae GA41317]
 gi|332203901|gb|EGJ17968.1| clp protease family protein [Streptococcus pneumoniae GA47368]
 gi|332204756|gb|EGJ18821.1| clp protease family protein [Streptococcus pneumoniae GA47901]
          Length = 196

 Score = 39.6 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 59/192 (30%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   DS   + + +++PGGS  AG AI   +  +K   
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +  
Sbjct: 87  QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      + +   ++++E+     +K    ++   W +  
Sbjct: 145 --------------------------KTRNTLEKILAENSGQSMEKVHADAERDNWMSAQ 178

Query: 217 EAKKVGLIDVVG 228
           E  + G ID + 
Sbjct: 179 ETLEYGFIDEIM 190


>gi|294055658|ref|YP_003549316.1| protein of unknown function DUF107 [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614991|gb|ADE55146.1| protein of unknown function DUF107 [Coraliomargarita akajimensis
           DSM 45221]
          Length = 499

 Score = 39.6 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 81/249 (32%), Gaps = 24/249 (9%)

Query: 38  VARIAIRGQIE--DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95
           V  I I G I   +   L   ++    +D    +I+ + +PGG+      +   + +   
Sbjct: 64  VYVIPIEGPIAKPNLYILRRGLKEAINND-VEMVILKMDTPGGALGVCLEMMEMLDRF-- 120

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
                T V   A SAG LI+  ++ I  A    +GS G++      +   + L   ++S 
Sbjct: 121 DGVTATYVDVDAISAGSLIAMTTDEIYFAPRGKIGSTGII--TGSGEDIPETLLRKMESY 178

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG----R 211
            +  +    +    +  K ++ M ++          +V     +       + +     R
Sbjct: 179 MN-AVIRSYNDEDPLRAKVMKAMMELDFELELEGKTIVEAGELLTLTAKEAMEEYGNPPR 237

Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
              G             G  E   +L    +      I+D+    +       N    +L
Sbjct: 238 PLLGE------------GIYESVDALLEARIGAENYVIRDFKVSYSEEIAKWMNGIAPAL 285

Query: 272 LEDTIPLMK 280
           +   +  + 
Sbjct: 286 MGFGLLFLF 294


>gi|218779308|ref|YP_002430626.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfatibacillum alkenivorans AK-01]
 gi|259585946|sp|B8FA62|CLPP_DESAA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|218760692|gb|ACL03158.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfatibacillum alkenivorans AK-01]
          Length = 201

 Score = 39.6 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 58/191 (30%), Gaps = 31/191 (16%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  +I ++  +  DD    +   ++SPGGS  AG AI+  +  +K     +      +  
Sbjct: 41  ANSIIAQLLFLESDDPEKDINFYINSPGGSVTAGMAIYDTMAYIKPEITTVCIGQAASMG 100

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L +       +   + +     +  +                               
Sbjct: 101 AVLLAAGNHGKRYSLPNARILIHQPMGGFQGQ---------------------------- 132

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228
                + +    +         +++     P  +    +D   + +  EAK+ GLID V 
Sbjct: 133 --ASDIAIQAQEILRMKEALNEILASHTGKPLKQVQQDTDRDYFMSPLEAKEYGLIDHVI 190

Query: 229 GQEEVWQSLYA 239
              E   S+  
Sbjct: 191 LNREDLDSIEE 201


>gi|146307078|ref|YP_001187543.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           mendocina ymp]
 gi|166214700|sp|A4XTZ5|CLPP_PSEMY RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|145575279|gb|ABP84811.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudomonas
           mendocina ymp]
          Length = 213

 Score = 39.6 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 56/191 (29%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED     +  ++  +  ++    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 45  VIFLVGQVEDYMANLICAQLLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKADV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L   A         S V     L  +      ++     I  +  
Sbjct: 105 STTCIGQACSMGAFLLAGGAKGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFI-- 162

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                             L++       +      +     +  
Sbjct: 163 ----------------------------RERLNELLAHHTGQSLETIERDTNRDNFMSAP 194

Query: 217 EAKKVGLIDVV 227
            A + G++D V
Sbjct: 195 RAVEYGIVDAV 205


>gi|83747693|ref|ZP_00944728.1| NfeD [Ralstonia solanacearum UW551]
 gi|207744010|ref|YP_002260402.1| membrane-bound serine protease (clpp class) protein [Ralstonia
           solanacearum IPO1609]
 gi|83725603|gb|EAP72746.1| NfeD [Ralstonia solanacearum UW551]
 gi|206595412|emb|CAQ62339.1| membrane-bound serine protease (clpp class) protein [Ralstonia
           solanacearum IPO1609]
          Length = 468

 Score = 39.6 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 70/215 (32%), Gaps = 5/215 (2%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSP 76
               V   WS      +  V  + + G I    +  ++  ++   + +    +++ + +P
Sbjct: 14  LAASVAAVWSGLALAAAAPVMVLPLTGAIGPASAAYVVHGLDVARK-EGMQLVVLQMDTP 72

Query: 77  GGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           GG   +   I +AI          +      AASAG  I  AS+I   A  + +G+   +
Sbjct: 73  GGLDASMRQIIQAILASPVPVAGYVAPGGARAASAGTYILYASHIAAMAPATNLGAASPV 132

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
                          +             S  +    +     + + D++ +        
Sbjct: 133 AIGIGGHAPAGPTPANPTPTTPGDTAKPASAPAASGNEDTLARKQMHDAAAYIRGLAQLR 192

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
            RN  + +   + +    +  EA    +ID++   
Sbjct: 193 GRNADWGE-RAVREAVSLSADEAATQRVIDLIATS 226


>gi|74311435|ref|YP_309854.1| putative protease/scaffold protein [Shigella sonnei Ss046]
 gi|73854912|gb|AAZ87619.1| putative protease/scaffold protein [Shigella sonnei Ss046]
          Length = 381

 Score = 39.6 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 62/205 (30%), Gaps = 34/205 (16%)

Query: 38  VARIAIRGQIEDSQELIERI-ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           V  + I  +I         + + I+   +   + + + SPGG  + G AI+ A++    +
Sbjct: 13  VVHVRIYDEIGGYGVKASALTDEINACGNVPEIHLRIHSPGGDIFEGLAIYNALKNHPAK 72

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
           K  I  +  MAAS    I+   + IV  E +++           V               
Sbjct: 73  K--IVHIEGMAASMASFIAMCGDHIVMPENAMMMIHAPRGVTAGVSG------------- 117

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-G 215
                             V+   D++D          +        +   + +   W  G
Sbjct: 118 -----------------DVRRFADLMDKLGDTMAETYAGRTGRSKQEITAMMEAETWMDG 160

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYAL 240
            E K  G  D V         + + 
Sbjct: 161 NECKANGFADEVIPAITAMARIESK 185


>gi|256111294|ref|ZP_05452320.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /
           3-hydroxybutyryl-CoA epimerase [Brucella melitensis bv.
           3 str. Ether]
 gi|265992800|ref|ZP_06105357.1| 3-hydroxyacyl-CoA dehydrogenase [Brucella melitensis bv. 3 str.
           Ether]
 gi|262763670|gb|EEZ09702.1| 3-hydroxyacyl-CoA dehydrogenase [Brucella melitensis bv. 3 str.
           Ether]
          Length = 738

 Score = 39.6 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%)

Query: 51  QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106
           QEL   I+ +  DD    ++++    +  G A     E +F+  QK K + P        
Sbjct: 36  QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                                   +   +     +             +      A  +P
Sbjct: 96  DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARAASDAP 143

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
             ++    V++             RL ++      D   +++ G   T   AK +GL+  
Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +   +++ ++   L     ++ ++ W+             +  + L      + + +  G
Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257


>gi|225682279|gb|EEH20563.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 266

 Score = 39.2 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           + +G  + G EA + G++D +GG +E    +    
Sbjct: 169 VLEGHRFGGKEALEHGIVDGLGGLDEALALIEKRK 203


>gi|206900534|ref|YP_002251048.1| periplasmic serine protease [Dictyoglomus thermophilum H-6-12]
 gi|206739637|gb|ACI18695.1| periplasmic serine protease [Dictyoglomus thermophilum H-6-12]
          Length = 281

 Score = 39.2 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 21/183 (11%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+E++  I     D     ++    +PGG   A E I  A++    +  V   V   
Sbjct: 67  IEDSEEVLRAIRLTPEDMPIDLIL---HTPGGLVLAAEQIAHALKNH--KGKVTVFVPHY 121

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           A S G  I+ A++ IV  E +++G +            L+ +      V+    K     
Sbjct: 122 AMSGGTFIALAADEIVMDENAVLGPVDPQLGEYPAASILNAINKK--GVEKVEDKTLI-- 177

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220
              +   A + ++ V +S +      +SE       +   +     WT        EA+K
Sbjct: 178 ---LGDVAEKAIRQVKESVFELLKDKMSE---EKAKEIAEILSTGTWTHDYPITVEEAQK 231

Query: 221 VGL 223
           +GL
Sbjct: 232 LGL 234


>gi|15613919|ref|NP_242222.1| hypothetical protein BH1356 [Bacillus halodurans C-125]
 gi|10173972|dbj|BAB05075.1| BH1356 [Bacillus halodurans C-125]
          Length = 445

 Score = 39.2 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 66/137 (48%), Gaps = 8/137 (5%)

Query: 5   LKKIKTRYVMLSLVTLTVVYF-----SWSSHVEDNSPHVARIAIRGQIE-DSQELIERIE 58
           +++I+  Y  L+ + + ++       +       + P V  I +  ++E   +  ++R  
Sbjct: 1   MERIRWLYGFLACILIAILLAPLQIMAQGEFRTSDQPLVYYIPVEQEVERGLEAFLQRSL 60

Query: 59  RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118
             + ++ A  +++ +++PGG   A   + RA+++     P+   V + A SAG  I+  +
Sbjct: 61  DSAVEEGADHIVLEINTPGGRVDAAGNMARALRET--DIPITAYVIDQALSAGAYIALNA 118

Query: 119 NIIVAAETSLVGSIGVL 135
           + IV A  S +GS  V+
Sbjct: 119 DEIVMAPGSTMGSAAVI 135


>gi|260575566|ref|ZP_05843564.1| Endopeptidase Clp [Rhodobacter sp. SW2]
 gi|259022209|gb|EEW25507.1| Endopeptidase Clp [Rhodobacter sp. SW2]
          Length = 210

 Score = 39.2 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 57/190 (30%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     +  ++  +  ++    + + ++SPGG   +G +I+  +Q +K R 
Sbjct: 38  IIFLSGPVHDGMSALICAQLLFLEAENPTKEISMYINSPGGVVTSGLSIYDTMQYIKPRI 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +    +  +   S V        Y                   
Sbjct: 98  STLVIGQAASMGSLLLTAGQKGMRFSLPNSRVMVHQPSGGYQGQ---------------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                +    ++   K    +  +        +  V             L      +  +
Sbjct: 142 ---ATDIMIHAQETQKLKDRLNGIYVKHTGQPMEAV----------VAALERDNFMSAED 188

Query: 218 AKKVGLIDVV 227
           AK  GLID +
Sbjct: 189 AKSWGLIDEI 198


>gi|226289657|gb|EEH45141.1| enoyl-CoA hydratase/isomerase family protein [Paracoccidioides
           brasiliensis Pb18]
          Length = 266

 Score = 39.2 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           + +G  + G EA + G++D +GG +E    +    
Sbjct: 169 VLEGHRFGGKEALEHGIVDGLGGLDEALALIEKRK 203


>gi|153836679|ref|ZP_01989346.1| membrane-bound serine protease [Vibrio parahaemolyticus AQ3810]
 gi|149750028|gb|EDM60773.1| membrane-bound serine protease [Vibrio parahaemolyticus AQ3810]
          Length = 459

 Score = 39.2 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 79/218 (36%), Gaps = 7/218 (3%)

Query: 36  PHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ-K 92
             V  + ++G I  +    L   IE+   +   + +I+ + +PGG   A   I  AI   
Sbjct: 21  NTVWIVPVKGAIGPANSGYLTREIEQAQIN-GVSLVILKMDTPGGLDSAMRDIIHAITTS 79

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
                  +      AASAG  I  AS++   AE + +G+   +      +      G   
Sbjct: 80  TTPIATWVGPSGSRAASAGTYILLASHVAAMAEATNLGAATPVAIGGAPQAPSSDDGKDN 139

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
           +S  S   K       +  P    M + V++ +  +   L              +S+   
Sbjct: 140 ES--SDENKPNAEKSGDQVPAKTAMEKKVINDAKAYIKGLAKLHDRNAQWAEKAVSEAAS 197

Query: 213 WTGAEAKKVGLIDVVGGQ-EEVWQSLYALGVDQSIRKI 249
               EA ++ +IDV+    EE+  ++    V  +   +
Sbjct: 198 LDAEEALELNVIDVIANSPEELVTAINGKSVKVNNLPV 235


>gi|226489631|emb|CAX74966.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog [Schistosoma japonicum]
          Length = 249

 Score = 39.2 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 57/191 (29%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D     ++ ++  +  +D    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 70  IICLMGAISDEVAGLVVAQLLYLQSEDKKIPIHIYINSPGGVVTAGLAIYDTMQFIKPPV 129

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L + A  +  A   S +                            
Sbjct: 130 ATWCVGQASSMGSLLLAAGAPGLRFALPHSRIMVHQPSGSAHGQ---------------- 173

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            +++  + +    +    +         +      D   + T  
Sbjct: 174 --------------ASDIKIHAEEIIKMRNIINTIYERHTKQSQEVIEKWMDRDYFMTAE 219

Query: 217 EAKKVGLIDVV 227
           EA   G++D+V
Sbjct: 220 EAVSFGIVDMV 230


>gi|148657308|ref|YP_001277513.1| AMP-dependent synthetase and ligase [Roseiflexus sp. RS-1]
 gi|148569418|gb|ABQ91563.1| acrylyl-CoA reductase (NADPH) / 3-hydroxypropionyl-CoA dehydratase /
            3-hydroxypropionyl-CoA synthetase [Roseiflexus sp. RS-1]
          Length = 1912

 Score = 39.2 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 59/216 (27%), Gaps = 30/216 (13%)

Query: 37   HVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
             +A + +     ++       EL   ++ ++R +   A+I       GS          I
Sbjct: 907  RIAIVTVTNPPVNALNERALDELNTIVDHLARREDVAAVI-----FTGSGTKSFVAGADI 961

Query: 91   QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
            +++      I             +   +++      ++            +   ++    
Sbjct: 962  KQMLEEMHTI--------EDALALPNNAHLAFRKIETMNKPCIAAINGVALGGGME---- 1009

Query: 151  SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--PYDKTLVLS 208
                   +       P +E     + +             RL+   R          ++ 
Sbjct: 1010 ----FALACHYRVADPHAEFGQPEINLRLLPGYGGTQRLPRLLYSRRGEAGLIKALQIIM 1065

Query: 209  DGRIWTGAEAKKVGLIDVVGG-QEEVWQSLYALGVD 243
             GR      A ++GL+D V    E+       +  +
Sbjct: 1066 GGRTLNAEHAYEIGLVDKVAYGHEDALTVATRMARE 1101


>gi|319404099|emb|CBI77689.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella
           rochalimae ATCC BAA-1498]
 gi|319407112|emb|CBI80749.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella sp.
           1-1C]
          Length = 210

 Score = 39.2 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 63/210 (30%), Gaps = 39/210 (18%)

Query: 40  RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G +ED+  ++   ++  +  ++    + + ++SPGG   +G AI+  +Q ++   
Sbjct: 37  IIFINGPVEDNMAMLVCAQLLFLEAENPKKEINLYINSPGGVVTSGMAIYDTMQFIRPSV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L + A+    A   + +                            
Sbjct: 97  STLCMGQAASMGSLLLTAGATGRRFALPNARIMVHQPSG--------------------- 135

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                      + +          +         +  +     Y+     L      T  
Sbjct: 136 -------GFQGQASDIERHA--QDIIKMKRRLNEIYVQHTGQSYEVIENTLDRDHFMTAE 186

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
           E+K+ GLID      +V Q       ++  
Sbjct: 187 ESKQFGLID------DVIQYRAETEKEEKD 210


>gi|298346554|ref|YP_003719241.1| endopeptidase Clp [Mobiluncus curtisii ATCC 43063]
 gi|304389728|ref|ZP_07371687.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|298236615|gb|ADI67747.1| endopeptidase Clp [Mobiluncus curtisii ATCC 43063]
 gi|304326904|gb|EFL94143.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 235

 Score = 39.2 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 61/180 (33%), Gaps = 28/180 (15%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D  + + + ++SPGGS  A  AI+  +Q +K     +      +
Sbjct: 75  ASADDVMAQLLVLESQDPDSLITMYINSPGGSFTAMTAIYDTMQYIKPEIQTVCLGQAAS 134

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L   A    +A   + V       Q    +     +      +     +      
Sbjct: 135 AAAVLLAGGAPGKRLALPNARVLIHQPAIQGAQGQATDLAI------IAEEIDRMRAWLE 188

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
             ++  + + ++ +                         +   +I T  +A + GLID V
Sbjct: 189 ETLSKHSKRSVEQMH----------------------EDIDRDKILTAPQALEYGLIDQV 226


>gi|219850369|ref|YP_002464802.1| hypothetical protein Cagg_3527 [Chloroflexus aggregans DSM 9485]
 gi|219544628|gb|ACL26366.1| protein of unknown function DUF114 [Chloroflexus aggregans DSM
           9485]
          Length = 275

 Score = 39.2 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 66/183 (36%), Gaps = 21/183 (11%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+ ++  I+   RD     ++    +PGG   A E I RA+++   +  V   V   
Sbjct: 67  IEDSEAVLRAIKMTDRDIPIDLIL---HTPGGLVLASEQIARALRRHPAK--VTVFVPHY 121

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           A S G LI+ A++ IV  E +++G +            L  L     S            
Sbjct: 122 AMSGGTLIALAADEIVMDENAVLGPVDPQLGQHPAASILRVLERKPISEIDDETLMMADI 181

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220
             +   +    + +++                   ++        +WT        EA++
Sbjct: 182 AEKAIRQVKHTVCELLSDKMSV----------EKAEEVAHTLASGVWTHDYPITVREARE 231

Query: 221 VGL 223
           +GL
Sbjct: 232 LGL 234


>gi|313672560|ref|YP_004050671.1| nodulation efficiency protein nfed [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939316|gb|ADR18508.1| Nodulation efficiency protein NfeD [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 416

 Score = 39.2 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 89/283 (31%), Gaps = 48/283 (16%)

Query: 11  RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-ELIE-RIERISRDDSATA 68
           R+++++L  +  +              +  I + G I +   + I+  IE  SR DS   
Sbjct: 3   RFILIALFLIFSLPVFSKE--------IYTIEVNGIITEFTYKFIKVNIENASRADSV-- 52

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
            +V L +PGG     E+  + +Q     K  +        +                   
Sbjct: 53  FLVKLDTPGG---ILESTRKIVQLFLESKIPVVVYVSPQGARATSAGAFIA--------- 100

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
                              L  +   +          P +         M+  V++    
Sbjct: 101 -------------------LSSNYLLMSDGTHIGAAHPVNITGEDIKGDMRKKVENDTTA 141

Query: 189 FVRLVSESRNIPYDKTLVLSDGRI-WTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSI 246
           F+R +++ R         +    I  T  EA    ++D +   +EE+ + +      +  
Sbjct: 142 FIRSIAQKRGKNEQIATEMVINSISLTAREAYDKRIVDDIVNTEEELIEKIKNRFNIKET 201

Query: 247 RKIKDWNP---PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
             +K + P    K  +F    N+ +  LL     +  + K+ G
Sbjct: 202 LFLKKYEPSITEKIAFFLSDPNIIVLLLLIAIASIFLEFKMPG 244


>gi|17988842|ref|NP_541475.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /
           3-hydroxybutyryl-CoA epimerase [Brucella melitensis bv.
           1 str. 16M]
 gi|256043669|ref|ZP_05446594.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /
           3-hydroxybutyryl-CoA epimerase [Brucella melitensis bv.
           1 str. Rev.1]
 gi|260564859|ref|ZP_05835344.1| FadB family protein [Brucella melitensis bv. 1 str. 16M]
 gi|265990089|ref|ZP_06102646.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|17984664|gb|AAL53739.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /
           3-hydroxybutyryl-CoA epimerase [Brucella melitensis bv.
           1 str. 16M]
 gi|260152502|gb|EEW87595.1| FadB family protein [Brucella melitensis bv. 1 str. 16M]
 gi|263000758|gb|EEZ13448.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella melitensis
           bv. 1 str. Rev.1]
          Length = 738

 Score = 39.2 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%)

Query: 51  QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106
           QEL   I+ +  DD    ++++    +  G A     E +F+  QK K + P        
Sbjct: 36  QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                                   +   +     +             +      A  +P
Sbjct: 96  DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARAASDAP 143

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
             ++    V++             RL ++      D   +++ G   T   AK +GL+  
Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +   +++ ++   L     ++ ++ W+             +  + L      + + +  G
Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257


>gi|315648325|ref|ZP_07901425.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           vortex V453]
 gi|315276260|gb|EFU39604.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           vortex V453]
          Length = 193

 Score = 39.2 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 62/188 (32%), Gaps = 33/188 (17%)

Query: 43  IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102
           I   I +S  +I ++  ++ +D    + + ++SPGGS  AG  I+  +Q +K +   I  
Sbjct: 36  IDDAIANS--IIAQLLFLAAEDPEKDIHMYINSPGGSVSAGFGIYDTMQIIKPQVSTICT 93

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
               +  A  L++ A+   +A   S +                                 
Sbjct: 94  GFAASYGAILLLAGATGKRLALPNSEIMIHQPHGGVQGQ--------------------- 132

Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKV 221
                       + +    +  +      ++SE      ++    +      +  EAK  
Sbjct: 133 ---------ATDIAITAKRIIKTREKLAHIISERTGQSVERVEMDMERDYFMSAQEAKDY 183

Query: 222 GLIDVVGG 229
           G+ID +  
Sbjct: 184 GIIDDIVT 191


>gi|300786519|ref|YP_003766810.1| protease subunit of ATP-dependent Clp protease [Amycolatopsis
           mediterranei U32]
 gi|299796033|gb|ADJ46408.1| protease subunit of ATP-dependent Clp protease [Amycolatopsis
           mediterranei U32]
          Length = 193

 Score = 39.2 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 54/178 (30%), Gaps = 31/178 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +I ++  ++ DD A  +   ++SPGGS  AG AI+  +Q VK                  
Sbjct: 44  IIAQLLLLAADDPAKDITFYINSPGGSVTAGMAIYDTMQLVKPDVSTWG-----LGFVAS 98

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           +     +     +  L+ +  ++   P          ++I++     MK           
Sbjct: 99  MGQFLLSSGTPGKRYLLPNTRIVMHQPSAGISGAAADIAIQAEVFGKMK----------- 147

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGG 229
                              + +       ++        R +   EA   G +D +  
Sbjct: 148 --------------RRIAEITARQTGQTVERITADADRDRWFDADEALTYGFVDHIVT 191


>gi|225686560|ref|YP_002734532.1| Fatty acid oxidation complex subunit alpha [Brucella melitensis
           ATCC 23457]
 gi|256262303|ref|ZP_05464835.1| FadB [Brucella melitensis bv. 2 str. 63/9]
 gi|225642665|gb|ACO02578.1| Fatty acid oxidation complex subunit alpha [Brucella melitensis
           ATCC 23457]
 gi|263092029|gb|EEZ16326.1| FadB [Brucella melitensis bv. 2 str. 63/9]
 gi|326410946|gb|ADZ68010.1| Fatty acid oxidation complex subunit alpha [Brucella melitensis
           M28]
 gi|326554237|gb|ADZ88876.1| Fatty acid oxidation complex subunit alpha [Brucella melitensis
           M5-90]
          Length = 738

 Score = 39.2 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%)

Query: 51  QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106
           QEL   I+ +  DD    ++++    +  G A     E +F+  QK K + P        
Sbjct: 36  QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                                   +   +     +             +      A  +P
Sbjct: 96  DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARAASDAP 143

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
             ++    V++             RL ++      D   +++ G   T   AK +GL+  
Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +   +++ ++   L     ++ ++ W+             +  + L      + + +  G
Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257


>gi|253796888|gb|ACT35699.1| capsid protein [Wolbachia phage WO]
 gi|253796910|gb|ACT35710.1| capsid protein [Wolbachia phage WO]
          Length = 136

 Score = 39.2 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   +  ++++ +Q  V   Y  F++L++ +R +  +K      G  + G +A ++GL D
Sbjct: 1   PHEPMTSESLESLQKEVGRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59

Query: 226 VV 227
            +
Sbjct: 60  GM 61


>gi|316935514|ref|YP_004110496.1| enoyl-CoA hydratase/isomerase [Rhodopseudomonas palustris DX-1]
 gi|315603228|gb|ADU45763.1| Enoyl-CoA hydratase/isomerase [Rhodopseudomonas palustris DX-1]
          Length = 282

 Score = 39.2 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 70/260 (26%), Gaps = 29/260 (11%)

Query: 31  VEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAY 81
           VE   P VARI +     D++         +L    +   RDDS   +I++ + P  SA 
Sbjct: 9   VERPDPAVARIVMNRP--DARNAQNLQMTYDLNAAFDDAVRDDSVKVIILAGAGPHFSAG 66

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
             +       +     P +           +        I    T    ++         
Sbjct: 67  H-DLRATTKNEAGVDFPPVGHWGGFREPGAHGRMAREQEIYLQITRRWRNLAKPMIAEVH 125

Query: 142 KPFLD---KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +     L  +   + +S       P   +               +     L      
Sbjct: 126 GKCIAGGLMLAWACDLIVASDNAEFCDPVVTM--------GVCGVEWFVHPWEL------ 171

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P     +L     W+  EA ++G+++ V    E+      L    + +        K  
Sbjct: 172 GPRKAKELLFTADSWSAQEAHQLGMVNHVVPATELSAFTLQLAQRIAAKPSFALKMTKEA 231

Query: 259 WFCDLKNLSISSLLEDTIPL 278
               +      + ++    L
Sbjct: 232 VNRSVDIQGQPAAIDQAFAL 251


>gi|226489629|emb|CAX74965.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog [Schistosoma japonicum]
          Length = 253

 Score = 39.2 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 57/191 (29%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D     ++ ++  +  +D    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 74  IICLMGSISDEVAGLVVAQLLYLQSEDKKIPIHIYINSPGGVVTAGLAIYDTMQFIKPPV 133

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L + A  +  A   S +                            
Sbjct: 134 ATWCVGQASSMGSLLLAAGAPGLRFALPHSRIMVHQPSGSAHGQ---------------- 177

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            +++  + +    +    +         +      D   + T  
Sbjct: 178 --------------ASDIKIHAEEIIKMRNIINTIYERHTKQSQEVIEKWMDRDYFMTAE 223

Query: 217 EAKKVGLIDVV 227
           EA   G++D+V
Sbjct: 224 EAVSFGIVDMV 234


>gi|327539255|gb|EGF25878.1| Nodulation efficiency, NfeD [Rhodopirellula baltica WH47]
          Length = 754

 Score = 39.2 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 29/264 (10%), Positives = 81/264 (30%), Gaps = 16/264 (6%)

Query: 40  RIAIRGQIEDSQELIERIERIS--RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G I  S+    +    +          +V++ SPGG+     ++  ++       
Sbjct: 309 LVRVTGNITGSRVRRWQSNLAASIDSPDVNTWLVAIDSPGGNLNRSASLAASLADPGIAI 368

Query: 98  PVI--TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
             +      E    A  +      ++++ E ++ GS         V+   + + +  +S 
Sbjct: 369 QSVGGWVTGEARGDAALIALACQPLLMSPEATIGGSGADAMSADDVRRQSELIDMIAEST 428

Query: 156 KSSP--MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
             S   ++    P   V+    +    V  ++     +  +E     + +   +      
Sbjct: 429 GRSAALIRGMLDPSISVHRYVHRRSGRVRYATSEQIRQESNEDAPSDWQRMEKVELATGL 488

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK------IKDWNPPKNYWFCDLKNLS 267
             A+A ++GL +      E  ++  +      +        +  W            +L 
Sbjct: 489 NAAQAIELGLAEATA---ESLRTAASSVGLNEVPPELSDRGLVRWVERLGGQTGLAMSLL 545

Query: 268 -ISSLLEDTIPLMKQTKVQGLWAV 290
            I  ++           + G  ++
Sbjct: 546 VIGFMMLSIEASAPGLGLPGFISL 569


>gi|116515217|ref|YP_802846.1| hypothetical protein BCc_293 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116257071|gb|ABJ90753.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease,
           heat shock protein F21.5 [Buchnera aphidicola str. Cc
           (Cinara cedri)]
          Length = 200

 Score = 39.2 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 54/188 (28%), Gaps = 32/188 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G I+D  +  +I +I  +  ++    + + ++SPGG   +G +I+  +Q V+ + 
Sbjct: 41  IIFITGIIDDNIASIVISQILFLESENKKKDIFIYINSPGGIITSGLSIYDTMQFVQPKI 100

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I     + A+                  ++    +          +       K  K 
Sbjct: 101 NTICIGQAVYAAILLCSGNKGKRFSLPHARIMLHQPLGGFKGQASDIMIHAQEIKKIKKI 160

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                       +        +D                                ++  E
Sbjct: 161 INNLLSYHTKQPIKKIKKDTERDY------------------------------FFSAQE 190

Query: 218 AKKVGLID 225
           A K GLID
Sbjct: 191 AIKYGLID 198


>gi|254695819|ref|ZP_05157647.1| FadB, fatty oxidation complex, alpha subunit [Brucella abortus bv.
           3 str. Tulya]
 gi|261216239|ref|ZP_05930520.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella abortus bv. 3
           str. Tulya]
 gi|260917846|gb|EEX84707.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella abortus bv. 3
           str. Tulya]
          Length = 738

 Score = 39.2 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%)

Query: 51  QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106
           QEL   I+ +  DD    ++++    +  G A     E +F+  QK K + P        
Sbjct: 36  QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                                   +   +     +             +      A  +P
Sbjct: 96  DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARAASDAP 143

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
             ++    V++             RL ++      D   +++ G   T   AK +GL+  
Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +   +++ ++   L     ++ ++ W+             +  + L      + + +  G
Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257


>gi|62317371|ref|YP_223224.1| FadB, fatty oxidation complex subunit alpha [Brucella abortus bv. 1
           str. 9-941]
 gi|83269347|ref|YP_418638.1| fatty oxidation complex subunit alpha [Brucella melitensis biovar
           Abortus 2308]
 gi|189022623|ref|YP_001932364.1| FadB, fatty oxidation complex, alpha subunit [Brucella abortus S19]
 gi|237816923|ref|ZP_04595915.1| Fatty acid oxidation complex subunit alpha [Brucella abortus str.
           2308 A]
 gi|254690870|ref|ZP_05154124.1| FadB, fatty oxidation complex, alpha subunit [Brucella abortus bv.
           6 str. 870]
 gi|254698651|ref|ZP_05160479.1| FadB, fatty oxidation complex, alpha subunit [Brucella abortus bv.
           2 str. 86/8/59]
 gi|254732098|ref|ZP_05190676.1| FadB, fatty oxidation complex, alpha subunit [Brucella abortus bv.
           4 str. 292]
 gi|256256055|ref|ZP_05461591.1| FadB, fatty oxidation complex, alpha subunit [Brucella abortus bv.
           9 str. C68]
 gi|260544607|ref|ZP_05820428.1| FadB protein [Brucella abortus NCTC 8038]
 gi|260756452|ref|ZP_05868800.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella abortus bv. 6
           str. 870]
 gi|260759884|ref|ZP_05872232.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella abortus bv. 4
           str. 292]
 gi|260763122|ref|ZP_05875454.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260882274|ref|ZP_05893888.1| 3-hydroxyacyl-CoA dehydrogenase [Brucella abortus bv. 9 str. C68]
 gi|297249409|ref|ZP_06933110.1| FadB, fatty oxidation complex, alpha subunit [Brucella abortus bv.
           5 str. B3196]
 gi|62197564|gb|AAX75863.1| FadB, fatty oxidation complex, alpha subunit [Brucella abortus bv.
           1 str. 9-941]
 gi|82939621|emb|CAJ12610.1| NAD binding site:Enoyl-CoA hydratase/isomerase:3-hydroxyacyl-CoA
           dehydrogenase, C-terminal:3-hydroxyacyl-CoA
           dehydrogenase, N [Brucella melitensis biovar Abortus
           2308]
 gi|189021197|gb|ACD73918.1| FadB, fatty oxidation complex, alpha subunit [Brucella abortus S19]
 gi|237787736|gb|EEP61952.1| Fatty acid oxidation complex subunit alpha [Brucella abortus str.
           2308 A]
 gi|260097878|gb|EEW81752.1| FadB protein [Brucella abortus NCTC 8038]
 gi|260670202|gb|EEX57142.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella abortus bv. 4
           str. 292]
 gi|260673543|gb|EEX60364.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260676560|gb|EEX63381.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella abortus bv. 6
           str. 870]
 gi|260871802|gb|EEX78871.1| 3-hydroxyacyl-CoA dehydrogenase [Brucella abortus bv. 9 str. C68]
 gi|297173278|gb|EFH32642.1| FadB, fatty oxidation complex, alpha subunit [Brucella abortus bv.
           5 str. B3196]
          Length = 738

 Score = 39.2 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%)

Query: 51  QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106
           QEL   I+ +  DD    ++++    +  G A     E +F+  QK K + P        
Sbjct: 36  QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                                   +   +     +             +      A  +P
Sbjct: 96  DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARAASDAP 143

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
             ++    V++             RL ++      D   +++ G   T   AK +GL+  
Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +   +++ ++   L     ++ ++ W+             +  + L      + + +  G
Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257


>gi|226227816|ref|YP_002761922.1| ATP-dependent Clp protease proteolytic subunit [Gemmatimonas
           aurantiaca T-27]
 gi|226091007|dbj|BAH39452.1| ATP-dependent Clp protease proteolytic subunit [Gemmatimonas
           aurantiaca T-27]
          Length = 204

 Score = 39.2 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 57/191 (29%), Gaps = 32/191 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I D     +I ++  +  D+    + + ++SPGGS  AG A++  +Q +K   
Sbjct: 31  IIFLGSPINDDVANIIIAQMLFLDADNPEKPIHLYINSPGGSVSAGLAMYDTMQFIKAPV 90

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L + A     A   S +                 ++         
Sbjct: 91  YTTCMGMAASMGAFLLCAGAPGHRAALPHSRIMIHQPSQNGGGGSASDIEIQAREILYLR 150

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
           +                                 L+++      ++        R  +  
Sbjct: 151 AK-----------------------------MNELMAKHTGRQVEQVERDTDRDRFMSAD 181

Query: 217 EAKKVGLIDVV 227
           +AK+ GLID V
Sbjct: 182 DAKEYGLIDNV 192


>gi|225848210|ref|YP_002728373.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644423|gb|ACN99473.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 202

 Score = 39.2 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 31/178 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGG   AG AI+  +  +K     I      +  A  
Sbjct: 49  IVAQLLFLEAEDPEKDIYMYINSPGGVVTAGFAIYDTMNYIKPDVVTICIGQAASMGAFL 108

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     +   + +     L  +      ++                          
Sbjct: 109 LSAGAKGKRYSLPNARIMIHQPLGGFQGQATDIEIHARE--------------------- 147

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGG 229
                    +          +++    P +K    ++   + +  EAK+ GLID V  
Sbjct: 148 ---------ILRLKRMLNEYLAKHTGQPIEKIEADTERDYFMSAEEAKEYGLIDKVIY 196


>gi|544044|sp|P36398|CLPP_STRSL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|347999|gb|AAA26891.1| ATP-dependent protease proteolytic subunit [Streptococcus
           salivarius]
          Length = 196

 Score = 39.2 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 2/155 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 27  IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S           +       +          D    +   +K+
Sbjct: 87  QTIVMGMAASMGTVIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                +    +   P     +    D+       L
Sbjct: 147 RNNLEQILADNSGQPIEKVHVDAERDNWMSAQETL 181


>gi|322383234|ref|ZP_08057045.1| ATP-dependent Clp protease proteolytic subunit-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321152503|gb|EFX45289.1| ATP-dependent Clp protease proteolytic subunit-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 191

 Score = 39.2 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 65/197 (32%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I   I+D     +I ++  +S  D+   + + ++SPGGS  AG  I+  +Q +K   
Sbjct: 24  IIFIGSAIDDDVVNLVIAQLLFLSAQDADKDIHLYINSPGGSVTAGLGIYDTMQYIKPDV 83

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   S V     L     V+     + +    +  
Sbjct: 84  STICVGMAASMGSLLLTAGAKGKRFALPNSEVMIHQPLG---GVRGQAADIKIHADWILK 140

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216
           +  K                                       YDK    +D     +  
Sbjct: 141 TRKKLNEIYVH---------------------------HTGQTYDKIDKDTDRDNFLSAL 173

Query: 217 EAKKVGLIDVVGGQEEV 233
           +AK+ GLID V  + ++
Sbjct: 174 DAKEYGLIDEVITRSDL 190


>gi|313891327|ref|ZP_07824945.1| endopeptidase Clp [Streptococcus pseudoporcinus SPIN 20026]
 gi|332522859|ref|ZP_08399111.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Streptococcus porcinus str. Jelinkova 176]
 gi|313120394|gb|EFR43515.1| endopeptidase Clp [Streptococcus pseudoporcinus SPIN 20026]
 gi|332314123|gb|EGJ27108.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 196

 Score = 39.2 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 62/197 (31%), Gaps = 31/197 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 27  IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D   V+ + +K+
Sbjct: 87  QTIVMGMAASMGTIIASSGAKGKRFMLPNAEYLIHQPMGGAGSGTQQTDMAIVAEQLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
                                            ++++++      +    ++   W    
Sbjct: 147 RK----------------------------RLEKILADNSGKTIKQIHKDAERDYWMDAK 178

Query: 217 EAKKVGLIDVVGGQEEV 233
           E  + G ID +    E+
Sbjct: 179 ETLEYGFIDEIMENNEL 195


>gi|238695592|ref|YP_002922619.1| P05 [Xanthomonas phage phiL7]
 gi|190343959|gb|ACE75745.1| P05 [Xanthomonas phage phiL7]
          Length = 245

 Score = 39.2 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 69/231 (29%), Gaps = 44/231 (19%)

Query: 33  DNSPHVAR-----IAIRGQIEDS----QELIERIERISRDDSATALIVSLSSPGGSAYAG 83
             +P  A      I I G+I +          +I ++ RD     + V++ SPGG  +AG
Sbjct: 30  AGTPQAAVMHGRAIDIFGEIGEDLYGEGTTSAQISQMLRDMGPGDVTVNIDSPGGDMFAG 89

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
            AI+  ++                 +   + + AS   V A    V ++         + 
Sbjct: 90  LAIYNQLRAHDG-----------VVTVNVVGTAASAASVIAMAGDVVNMHPAAFIMIHQT 138

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
           +L   G S   +  +                      ++         + +     P  +
Sbjct: 139 WLLAAGNSRDFIALAE---------------------MLAPFDKAMAEIYASRTGKPLAE 177

Query: 204 TLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
              L     W    EA   GL D V   E        L       +I D+N
Sbjct: 178 VEQLMAEETWFNAEEAVAYGLADKVLDPE--ASKNKRLSASTGKPEIPDFN 226


>gi|159905311|ref|YP_001548973.1| hypothetical protein MmarC6_0926 [Methanococcus maripaludis C6]
 gi|159886804|gb|ABX01741.1| protein of unknown function DUF114 [Methanococcus maripaludis C6]
          Length = 274

 Score = 39.2 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            IEDS+E++  I     D     ++    +PGG   A E I  A+++ K +  VI   + 
Sbjct: 66  TIEDSEEILRAIRLTPEDMPIDLIL---HTPGGLVLASEQIATALKEHKAKTTVIIPHYA 122

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           M+   G LI+ A++ I+  + +++G +            ++ +    
Sbjct: 123 MSG--GSLIALAADEIIIDKNAVMGPVDPQVGQYPAASIINAINTKY 167


>gi|328948166|ref|YP_004365503.1| ATP-dependent Clp protease proteolytic subunit [Treponema
           succinifaciens DSM 2489]
 gi|328448490|gb|AEB14206.1| ATP-dependent Clp protease proteolytic subunit [Treponema
           succinifaciens DSM 2489]
          Length = 203

 Score = 39.2 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  ++ +I  +  ++    + + ++SPGGS  AG AI+  +Q V+   
Sbjct: 34  IIFVDGEIRDETADLIVAQILYLESENPEKDISMYINSPGGSVTAGLAIYDTMQYVRCDI 93

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             I      +  A  L         A  +S V       
Sbjct: 94  QTICMGQAASMGAIILAGGTIGKRYALPSSRVMIHQPWG 132


>gi|325271030|ref|ZP_08137615.1| hypothetical protein HMPREF9141_2825 [Prevotella multiformis DSM
           16608]
 gi|324986628|gb|EGC18626.1| hypothetical protein HMPREF9141_2825 [Prevotella multiformis DSM
           16608]
          Length = 348

 Score = 39.2 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 62/195 (31%), Gaps = 38/195 (19%)

Query: 45  GQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH 104
           G I  +Q +   +       +   + V ++S GG  Y G AIF A++   ++  +   V 
Sbjct: 29  GTITSAQ-ITRELMAAEA--TYKNIDVRINSIGGEVYTGIAIFNALRA--SKANITIYVD 83

Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164
            +AAS   +I+     +  +  + +    V          +  +   ++S++        
Sbjct: 84  GVAASMASVIALCGKPVYMSRYARLMLHSVSGGCYGNTRDMKDMISQMESLE-------- 135

Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGR--IWTGAEAKKV 221
                                      + ++       +      DG     T  EAK  
Sbjct: 136 ----------------------DTLCDMYADKLGKDKAEIKSSYFDGTDHWLTAEEAKIS 173

Query: 222 GLIDVVGGQEEVWQS 236
           G ID +   + V + 
Sbjct: 174 GFIDGIYDADPVPEE 188


>gi|317130215|ref|YP_004096497.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475163|gb|ADU31766.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cellulosilyticus DSM 2522]
          Length = 195

 Score = 39.2 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 61/192 (31%), Gaps = 33/192 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  ++ ++  ++ DD    + + ++SPGGS  AG AIF  +Q ++ + 
Sbjct: 29  IIMLGSAIDDNVANSIVSQLLFLAADDPEKDISLYINSPGGSITAGMAIFDTMQFIQPKV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +       A   S V     L         ++           
Sbjct: 89  QTICIGMAASMGAFLLAAGEPGKRFALPNSEVMIHQPLGGAQGQAADIEIHAKR------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +         +++E    P +            T  
Sbjct: 143 ------------------------IVQMREKLNEILAERTGQPIEVIARDTDRDNFMTSF 178

Query: 217 EAKKVGLIDVVG 228
           EAKK GLID V 
Sbjct: 179 EAKKYGLIDEVM 190


>gi|195146760|ref|XP_002014352.1| GL19149 [Drosophila persimilis]
 gi|194106305|gb|EDW28348.1| GL19149 [Drosophila persimilis]
          Length = 253

 Score = 39.2 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D  S  ++ ++  +  ++    + + ++SPGG   AG AI+  +Q VK   
Sbjct: 55  IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L + A  +  +                            I     
Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYS-------LPNARIMIHQPSGGAQGQATDILIHAE 167

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
             +K +    S     A    +++                                T  E
Sbjct: 168 EIIKIKRQLTSIYVKHAKNSYEEMCQRMERDH----------------------FMTPDE 205

Query: 218 AKKVGLIDVV 227
           AK +G+ID V
Sbjct: 206 AKILGIIDHV 215


>gi|33519711|ref|NP_878543.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Blochmannia floridanus]
 gi|60389741|sp|Q7VRH1|CLPP_BLOFL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|33504056|emb|CAD83317.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Blochmannia floridanus]
          Length = 209

 Score = 39.2 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 58/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+IE+     ++ +I  +  +D    + + ++SPGG   AG +I+  +Q VK   
Sbjct: 44  IIFVIGKIENFMANLIVAQIMFLESEDPVKDIHLYINSPGGEVTAGMSIYDIMQFVKPNI 103

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L +  +        S V     L                      
Sbjct: 104 STYCIGQAASMGAFLLAAGTTGKRFCLPNSRVMIHQPLGSLHGQ---------------- 147

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            + +    +        +L+++      D     +      +  
Sbjct: 148 --------------ATDIAIHATEILKVKENINKLMAKHTGKSIDVIRQDMERDCFLSAD 193

Query: 217 EAKKVGLIDVV 227
           E+ K GL+D V
Sbjct: 194 ESVKYGLVDSV 204


>gi|323449361|gb|EGB05250.1| hypothetical protein AURANDRAFT_9147 [Aureococcus anophagefferens]
          Length = 57

 Score = 39.2 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102
           L+ ++  ++ DD    + + ++SPGGS  AG AI+  +Q V      +  
Sbjct: 7   LVAQLLYLANDDPTKDITLYINSPGGSVSAGMAIYDTMQFVPCDVSTVCF 56


>gi|255102472|ref|ZP_05331449.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-63q42]
          Length = 194

 Score = 39.2 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 56/176 (31%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGGS  +G AI+  +Q +K     I      +  A  
Sbjct: 44  IVAQLLFLEAEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A    +A   S +     L         ++     I  +                 
Sbjct: 104 LAAGAKGKRLALPNSEIMIHQPLGGAQGQATDIEIHAKRILKI----------------- 146

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227
                              + SE    P +K           +  EAK+ GLID V
Sbjct: 147 -------------KETLNEIFSERTGQPLEKIKMDTERDNFMSALEAKEYGLIDEV 189


>gi|254503951|ref|ZP_05116102.1| enoyl-CoA hydratase/isomerase family protein [Labrenzia alexandrii
           DFL-11]
 gi|222440022|gb|EEE46701.1| enoyl-CoA hydratase/isomerase family protein [Labrenzia alexandrii
           DFL-11]
          Length = 260

 Score = 39.2 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 19/54 (35%)

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260
           +   R+ T  EA + GL+  V   +++      L    +    K +   K    
Sbjct: 162 MLTNRVLTAKEACEWGLVTRVVSPDDLMAEARKLAAQFANGPTKAYGGVKRLLQ 215


>gi|310816210|ref|YP_003964174.1| Protease subunit of ATP-dependent Clp protease [Ketogulonicigenium
           vulgare Y25]
 gi|308754945|gb|ADO42874.1| Protease subunit of ATP-dependent Clp protease [Ketogulonicigenium
           vulgare Y25]
          Length = 207

 Score = 39.2 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 62/190 (32%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     ++ ++  +  ++    + + ++SPGG   +G +I+  +Q ++ + 
Sbjct: 37  IIFVSGVVEDGMSQLIVAQLLHLEAENPKKEISMYINSPGGVVTSGLSIYDTMQYIRPKV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +  + +  +   S V        +                   
Sbjct: 97  STLVIGQAASMGSLLLAAGEAGMRYSLPNSRVMVHQPSGGFQGQVT-------------- 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                +    +  + K  + + ++           V             L      +  E
Sbjct: 143 -----DIMIHARESEKLKRRLNEIYVKHTGQSYEAVEA----------ALERDNFKSAEE 187

Query: 218 AKKVGLIDVV 227
           AK+ GLID +
Sbjct: 188 AKEFGLIDEI 197


>gi|7524837|ref|NP_045839.1| ATP-dependent Clp protease proteolytic subunit [Chlorella vulgaris]
 gi|3023501|sp|P56317|CLPP_CHLVU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|2224431|dbj|BAA57915.1| ATP-dependent Clp protease proteolytic subunit [Chlorella vulgaris]
          Length = 201

 Score = 39.2 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 57/183 (31%), Gaps = 33/183 (18%)

Query: 50  SQELIERI----ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
             EL  ++      ++ ++    L + ++SPGGS   G A++ A+  +K+    I     
Sbjct: 40  DDELANQLIGIMLYLNAEEQNKGLYIYINSPGGSVTCGIAVYDAMNYIKSEVTTICV--- 96

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
                                + + S  +       +  L    + +   +         
Sbjct: 97  ------------------GTAASMASFILAGGDRGKRIALPHSRIMVHQPEGGSQGQASE 138

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
             SE         Q     S      L   SR++  D+          +  EAK+ GL+D
Sbjct: 139 VLSESQEVMRIRRQVGRIYSERTGQTLSRVSRDMDRDQ--------FLSAREAKEYGLVD 190

Query: 226 VVG 228
            V 
Sbjct: 191 QVA 193


>gi|253796892|gb|ACT35701.1| capsid protein [Wolbachia phage WO]
 gi|253796894|gb|ACT35702.1| capsid protein [Wolbachia phage WO]
 gi|253796896|gb|ACT35703.1| capsid protein [Wolbachia phage WO]
 gi|253796914|gb|ACT35712.1| capsid protein [Wolbachia phage WO]
          Length = 101

 Score = 39.2 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   +  ++++ +Q  V   Y  F++L++ +R +  +K      G  + G +A ++GL D
Sbjct: 1   PHEPMTSESLESLQKEVGRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59

Query: 226 VV 227
            +
Sbjct: 60  GM 61


>gi|270292328|ref|ZP_06198539.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus sp.
           M143]
 gi|270278307|gb|EFA24153.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus sp.
           M143]
          Length = 196

 Score = 39.2 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 58/192 (30%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   DS   + + +++PGGS  AG AI   +  +K   
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +K+
Sbjct: 87  QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                            ++++ +     ++    ++   W +  
Sbjct: 147 RK----------------------------TLEQILATNSGKSVEQIHADAERDYWMSAQ 178

Query: 217 EAKKVGLIDVVG 228
           E  + G ID + 
Sbjct: 179 ETLEYGFIDEIM 190


>gi|254243547|ref|ZP_04936869.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126196925|gb|EAZ60988.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 443

 Score = 39.2 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 61/209 (29%), Gaps = 27/209 (12%)

Query: 33  DNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
             S  V  +++ G I    +  L+  IER + D  A  +++ L +PGG   +   I +AI
Sbjct: 22  AASGPVRVLSVDGAIGPASADYLVRGIERAAED-GAQLVVLELDTPGGLDASMRRIVKAI 80

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
                            +        A +   AA                    L     
Sbjct: 81  LA---------------SQVPVAGFVAPSGARAASAGTYILYACHIAAMAPGTNLGAATP 125

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSD 209
                    +     P  +   +  + M     +    ++R +++ R    +     + +
Sbjct: 126 VR-------LGTPDKPAEKPPARDAEPMARKQVNDAAAYIRGLAQLRGRNVEWAERAVRE 178

Query: 210 GRIWTGAEAKKVGLID-VVGGQEEVWQSL 237
                  EA    +ID       ++ + L
Sbjct: 179 AVSLAAHEAAAQKVIDLQARDLPDLLRQL 207


>gi|295662198|ref|XP_002791653.1| enoyl-CoA hydratase/isomerase family protein [Paracoccidioides
           brasiliensis Pb01]
 gi|226279779|gb|EEH35345.1| enoyl-CoA hydratase/isomerase family protein [Paracoccidioides
           brasiliensis Pb01]
          Length = 266

 Score = 39.2 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           + +G  + G EA + G++D +G  +E    +    
Sbjct: 169 VLEGHRFGGKEALEHGIVDGLGDLDEALALIEKRK 203


>gi|217967716|ref|YP_002353222.1| protein of unknown function DUF114 [Dictyoglomus turgidum DSM 6724]
 gi|217336815|gb|ACK42608.1| protein of unknown function DUF114 [Dictyoglomus turgidum DSM 6724]
          Length = 280

 Score = 39.2 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 62/183 (33%), Gaps = 21/183 (11%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+E++  I     D     ++    +PGG   A E I  A++    +  V   V   
Sbjct: 67  IEDSEEILRAIRLTPEDMPIDLIL---HTPGGLVLAAEQIAHALKNH--KGKVTVFVPHY 121

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           A S G  I+ A++ I+  E +++G +            L+ +            K     
Sbjct: 122 AMSGGTFIALAADEIIMDENAVLGPVDPQLGEYPAASILNAINR----------KGADKV 171

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220
             +         + +       F  L  +       +   +     WT        EA+K
Sbjct: 172 EDKTLILGDVAEKAIRQVKESVFELLKDKMPEEKAKEIAEILSTGTWTHDYPITVEEAQK 231

Query: 221 VGL 223
           +GL
Sbjct: 232 LGL 234


>gi|198461900|ref|XP_001352265.2| GA18618 [Drosophila pseudoobscura pseudoobscura]
 gi|198142480|gb|EAL29303.2| GA18618 [Drosophila pseudoobscura pseudoobscura]
          Length = 253

 Score = 39.2 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D  S  ++ ++  +  ++    + + ++SPGG   AG AI+  +Q VK   
Sbjct: 55  IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  +  L + A  +  +                            I     
Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYS-------LPNARIMIHQPSGGAQGQATDILIHAE 167

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
             +K +    S     A    +++                                T  E
Sbjct: 168 EIIKIKRQLTSIYVKHAKNSYEEMCQRMERDH----------------------FMTPDE 205

Query: 218 AKKVGLIDVV 227
           AK +G+ID V
Sbjct: 206 AKVLGIIDHV 215


>gi|307708900|ref|ZP_07645360.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus mitis
           SK564]
 gi|322376945|ref|ZP_08051438.1| Clp protease [Streptococcus sp. M334]
 gi|307620236|gb|EFN99352.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus mitis
           SK564]
 gi|321282752|gb|EFX59759.1| Clp protease [Streptococcus sp. M334]
          Length = 196

 Score = 39.2 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 59/192 (30%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   DS   + + +++PGGS  AG AI   +  +K   
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +  
Sbjct: 87  QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      + +   ++++E+     +K    ++   W +  
Sbjct: 145 --------------------------KTRNTLEKILAENSGQSIEKVHADAERDNWMSAQ 178

Query: 217 EAKKVGLIDVVG 228
           E  + G ID + 
Sbjct: 179 ETLEYGFIDEIM 190


>gi|107099435|ref|ZP_01363353.1| hypothetical protein PaerPA_01000447 [Pseudomonas aeruginosa PACS2]
          Length = 441

 Score = 39.2 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 63/208 (30%), Gaps = 25/208 (12%)

Query: 33  DNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
             S  V  +++ G I    +  L+  IER + D  A  +++ L +PGG   +   I +AI
Sbjct: 20  AASGPVRVLSVDGAIGPASADYLVRGIERAAED-GAQLVVLELDTPGGLDASMRRIVKAI 78

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
                            +        A +   AA                    L     
Sbjct: 79  LA---------------SQVPVAGFVAPSGARAASAGTYILYACHIAAMAPGTNLG--AA 121

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
           +   + +    AE  P  + +P A + + D                RN  + +   + + 
Sbjct: 122 TPVRLGTPDKPAEKPPARDADPMARKQVNDAAAYIRGLAQLR---GRNAEWAE-RAVREA 177

Query: 211 RIWTGAEAKKVGLID-VVGGQEEVWQSL 237
                 EA    +ID       ++ + L
Sbjct: 178 VSLAAHEAAAQKVIDLQARDLPDLLRQL 205


>gi|307637483|gb|ADN79933.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           908]
          Length = 195

 Score = 39.2 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 42/114 (36%), Gaps = 2/114 (1%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+I DS    ++ ++  +  +D    + + ++SPGG   +G +I+  +  ++   
Sbjct: 29  IVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
             I      +  A  L   A     +   S +     L         ++ +   
Sbjct: 89  STICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNE 142


>gi|260780695|ref|YP_003227081.1| ATP-dependent Clp protease proteolytic subunit [Bryopsis hypnoides]
 gi|260176773|gb|ACX33782.1| ATP-dependent Clp protease proteolytic subunit [Bryopsis hypnoides]
          Length = 199

 Score = 39.2 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 29/178 (16%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           + +LI  +  ++ ++ A  L + ++SPGGS   G A++  +  +K+    I      + +
Sbjct: 44  ANQLIGIMLYLNAEEKAKDLYIYINSPGGSVTCGIAVYDIMNYIKSDVTTICVGTAASMA 103

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           +  L        +A   S +                                      SE
Sbjct: 104 SFILAGGCRGKRIAFPHSRIMIHQPEG---------------------GSQGQASEVLSE 142

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
                    Q     +      L   SR++  D+          +  EAKK GL+D +
Sbjct: 143 SEEVMRIRRQVGQIYAERTGQTLSRISRDMDRDQ--------FLSAQEAKKYGLVDHL 192


>gi|146277488|ref|YP_001167647.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
           sphaeroides ATCC 17025]
 gi|166214703|sp|A4WSH8|CLPP_RHOS5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|145555729|gb|ABP70342.1| Endopeptidase Clp [Rhodobacter sphaeroides ATCC 17025]
          Length = 210

 Score = 39.2 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 56/191 (29%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     +  ++  +  ++ +  + + ++SPGG   +G +I+  +Q ++ + 
Sbjct: 38  IIFLSGPVHDGMSSLICAQLLFLEAENPSKEIAMYINSPGGVVTSGLSIYDTMQYIRPKV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +    +  +   S V        Y                   
Sbjct: 98  STLVIGQAASMGSLLLTAGEKGMRFSLPNSRVMVHQPSGGYQGQ---------------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            + +     +        +  +      D     L      +  
Sbjct: 142 --------------ATDIMIHARETEKLKRRLNEIYVKHTGQDLDTVEAALERDNFMSAE 187

Query: 217 EAKKVGLIDVV 227
           +AK  GLID +
Sbjct: 188 DAKAWGLIDEI 198


>gi|15837789|ref|NP_298477.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
           9a5c]
 gi|18203347|sp|Q9PE41|CLPP_XYLFA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|9106157|gb|AAF83997.1|AE003953_1 ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
           9a5c]
          Length = 208

 Score = 39.2 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 61/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D     ++ ++  +  ++    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 36  LIFLVGPIDDYMANLIVAQLLFLEAENPEKDINIYINSPGGVVTAGMAIYDTMQYIKPAV 95

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S AS    A   S V     L  +      +D           
Sbjct: 96  STICVGQAASMGALLLASGASGKRYALPNSRVMIHQPLGGFQGQATDIDIHARE------ 149

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   + +       ++++      +            +  
Sbjct: 150 ------------------------ILALRARLNEILAKHTGQSLETIAHDTERDNFKSAV 185

Query: 217 EAKKVGLIDVVGG 229
           +A+  GL+D V G
Sbjct: 186 DAQAYGLVDQVLG 198


>gi|327482528|gb|AEA85838.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 458

 Score = 39.2 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 64/219 (29%), Gaps = 26/219 (11%)

Query: 30  HVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
                +  V  + + G I    +  ++  ++    D+ A  +++ L +PGG   +  AI 
Sbjct: 19  QSASAADPVTLLRVDGAIGPASADYILRGLQHAR-DEGAQLVVLELDTPGGLDTSMRAII 77

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
           +AI                                +A T ++ +  V    P        
Sbjct: 78  KAILASPIPVATYVTPS-------------GARAASAGTYMLYASHVAAMAPGTNLGAA- 123

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV---SESRNIPYD-K 203
              +   +   P      P  E    A      +     +     +   ++ R    +  
Sbjct: 124 ---TPVQIGGMPGAPPEQPKGEREDDAKASGDALARKQVNDAAAYIRGLAQLRERNAEWA 180

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              + +    + +EA  + +ID +    +V   L  L  
Sbjct: 181 EQAVREAVSLSASEALNLKVIDYLA--RDVADLLRQLDG 217


>gi|15595648|ref|NP_249142.1| hypothetical protein PA0451 [Pseudomonas aeruginosa PAO1]
 gi|218889191|ref|YP_002438055.1| putative membrane-bound protease [Pseudomonas aeruginosa LESB58]
 gi|9946310|gb|AAG03840.1|AE004482_7 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|218769414|emb|CAW25174.1| putative membrane-bound protease [Pseudomonas aeruginosa LESB58]
          Length = 443

 Score = 39.2 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 63/208 (30%), Gaps = 25/208 (12%)

Query: 33  DNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
             S  V  +++ G I    +  L+  IER + D  A  +++ L +PGG   +   I +AI
Sbjct: 22  AASGPVRVLSVDGAIGPASADYLVRGIERAAED-GAQLVVLELDTPGGLDASMRRIVKAI 80

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
                            +        A +   AA                    L     
Sbjct: 81  LA---------------SQVPVAGFVAPSGARAASAGTYILYACHIAAMAPGTNLG--AA 123

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
           +   + +    AE  P  + +P A + + D                RN  + +   + + 
Sbjct: 124 TPVRLGTPDKPAEKPPARDADPMARKQVNDAAAYIRGLAQLR---GRNAEWAE-RAVREA 179

Query: 211 RIWTGAEAKKVGLID-VVGGQEEVWQSL 237
                 EA    +ID       ++ + L
Sbjct: 180 VSLAAHEAAAQKVIDLQARDLPDLLRQL 207


>gi|317124504|ref|YP_004098616.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Intrasporangium calvum DSM 43043]
 gi|315588592|gb|ADU47889.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Intrasporangium calvum DSM 43043]
          Length = 217

 Score = 39.2 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 60/186 (32%), Gaps = 27/186 (14%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + ++I ++  +   D    +++ ++SPGGS  A  AI+  +Q V+            +
Sbjct: 55  ASADDIIAQLLVLESLDPDRDILMYINSPGGSFTAMTAIYDTMQFVRPDIQTFVIGQAAS 114

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L + A     A   + +                D    + + ++           
Sbjct: 115 AAAVLLGAGAPGKRFALPNARILIHQPALSGGDYGQASDIEIQANEVLRM---------- 164

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
                     ++D +          V             +   +I +  +AK+ GLID V
Sbjct: 165 -------RTWLEDTLAHHTGRTSEQVR----------NDIERDKILSSDDAKEYGLIDEV 207

Query: 228 GGQEEV 233
               + 
Sbjct: 208 LASRKA 213


>gi|46241469|gb|AAS82934.1| capsid protein [Wolbachia phage WO]
          Length = 136

 Score = 39.2 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   +  ++++ +Q  VD  Y  F++L++ +R +  +K      G  + G +A ++GL D
Sbjct: 1   PHEPMTSESLESLQKEVDRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59

Query: 226 VV 227
            +
Sbjct: 60  GM 61


>gi|296386949|ref|ZP_06876448.1| putative membrane-bound protease [Pseudomonas aeruginosa PAb1]
          Length = 443

 Score = 39.2 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 61/209 (29%), Gaps = 27/209 (12%)

Query: 33  DNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
             S  V  +++ G I    +  L+  IER + D  A  +++ L +PGG   +   I +AI
Sbjct: 22  AASGPVRVLSVDGAIGPASADYLVRGIERAAED-GAQLVVLELDTPGGLDASMRRIVKAI 80

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
                            +        A +   AA                    L     
Sbjct: 81  LA---------------SQVPVAGFVAPSGARAASAGTYILYACHIAAMAPGTNLGAATP 125

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSD 209
                    +     P  +   +  + M     +    ++R +++ R    +     + +
Sbjct: 126 VR-------LGTPDKPAEKPPARDAEPMARKQVNDAAAYIRGLAQLRGRNVEWAERAVRE 178

Query: 210 GRIWTGAEAKKVGLID-VVGGQEEVWQSL 237
                  EA    +ID       ++ + L
Sbjct: 179 AVSLAAHEAAAQKVIDLQARDLPDLLRQL 207


>gi|289168250|ref|YP_003446519.1| ATP-dependent CLP protease proteolytic subunit [Streptococcus mitis
           B6]
 gi|288907817|emb|CBJ22657.1| ATP-dependent CLP protease proteolytic subunit [Streptococcus mitis
           B6]
          Length = 196

 Score = 39.2 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 59/192 (30%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   DS   + + +++PGGS  AG AI   +  +K   
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +K+
Sbjct: 87  QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                            ++++E+     +K    ++   W +  
Sbjct: 147 RK----------------------------TLEKILAENSGQSIEKVHADAERDNWMSAQ 178

Query: 217 EAKKVGLIDVVG 228
           E  + G ID + 
Sbjct: 179 ETLEYGFIDEIM 190


>gi|238791540|ref|ZP_04635178.1| ATP-dependent Clp protease proteolytic subunit [Yersinia intermedia
           ATCC 29909]
 gi|238729156|gb|EEQ20672.1| ATP-dependent Clp protease proteolytic subunit [Yersinia intermedia
           ATCC 29909]
          Length = 647

 Score = 39.2 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 21/211 (9%), Positives = 55/211 (26%), Gaps = 40/211 (18%)

Query: 32  EDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
           + +    A I I  +I      +++    ++ +        + + + SPGG  + G AI+
Sbjct: 2   KASGEKSADIYIYEEIGYWGVTARQFASSLKALGD---IDHINLRIHSPGGDVFEGIAIY 58

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             +      K V  +                        S+   I ++     +      
Sbjct: 59  NLLNTHPASKTVYID--------------------GLAASMASVIAMVGNPVIMPENAMM 98

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
           +      +              ++                  +   ++      ++  V+
Sbjct: 99  MIHKPWGITGGDANDMRDYADLLDKVE------------GVLIPSYAKKTGKTPEELAVM 146

Query: 208 SDGRIW-TGAEAKKVGLIDVVGGQEEVWQSL 237
                W T  E  + G  D +    +    +
Sbjct: 147 LGEETWLTAQECVEHGFADQLLPSMQAMARI 177


>gi|116873833|ref|YP_850614.1| ATP-dependent Clp protease proteolytic subunit [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116742711|emb|CAK21835.1| ATP-dependent Clp protease proteolytic subunit [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 198

 Score = 39.2 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  ++ ++  +   D    + + ++SPGGS  AG AI+  +  VK   
Sbjct: 29  IIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYDTMNFVKADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A+    A   + +     L         ++           
Sbjct: 89  QTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAAR------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +         ++SE    PY+            T  
Sbjct: 142 -----------------------HILKIKERMNTIMSEKTGQPYEVIARDTDRDNFMTAQ 178

Query: 217 EAKKVGLIDVV 227
           EAK  GLID +
Sbjct: 179 EAKDYGLIDDI 189


>gi|300853555|ref|YP_003778539.1| phage related protease [Clostridium ljungdahlii DSM 13528]
 gi|300433670|gb|ADK13437.1| phage related protease [Clostridium ljungdahlii DSM 13528]
          Length = 279

 Score = 39.2 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 62/202 (30%), Gaps = 39/202 (19%)

Query: 43  IRGQIEDSQELIERI------ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           + G I DS    + I      E +        L V ++S GG  +AG+AI+  +++    
Sbjct: 23  LYGDISDSTWWGDEITPKNFKEELDSLGDIKTLNVYINSGGGDVFAGQAIYSMLKRHSAT 82

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
             V  +                        S+   I +      +      +  +  S  
Sbjct: 83  VNVYVD--------------------GLAASIASIIAMAGDSVKMPKNAMLMVHNPWSYA 122

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215
               K       +++                  + +  +   +  +  + L D   W T 
Sbjct: 123 MGNAKDFRKLADDLDK------------VRESMISVYEDKTGMEKESIVELLDAETWMTA 170

Query: 216 AEAKKVGLIDVVGGQEEVWQSL 237
            EA + G  D +  +++V  SL
Sbjct: 171 EEAVEFGFADEIEEEKQVAASL 192


>gi|239907453|ref|YP_002954194.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
           magneticus RS-1]
 gi|259585949|sp|C4XH03|CLPP_DESMR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|239797319|dbj|BAH76308.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
           magneticus RS-1]
          Length = 202

 Score = 39.2 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 54/185 (29%), Gaps = 31/185 (16%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +  ++  +  +D    + + ++SPGG   AG AI+  +Q V      +      +  A  
Sbjct: 44  ICAQLLFLESEDPEKEIFMYINSPGGVVSAGLAIYDTMQYVMPPVSTLCLGQAASMGALL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A+ +  A   S +        Y      ++      +                   
Sbjct: 104 LCAGATGMRYALPHSRIMIHQPSGGYQGQATDIEIHAKETR------------------- 144

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231
                       +      ++++      ++           +  EA   GLID V    
Sbjct: 145 -----------RTRETLNEIMAKHTGQSMERIQVDTERDNFMSAEEAVAYGLIDKVLTSR 193

Query: 232 EVWQS 236
           E  + 
Sbjct: 194 ERLEK 198


>gi|228476630|ref|ZP_04061312.1| Clp protease [Streptococcus salivarius SK126]
 gi|228251825|gb|EEK10890.1| Clp protease [Streptococcus salivarius SK126]
          Length = 196

 Score = 39.2 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 2/155 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 27  IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S           +       +          D    +   +K+
Sbjct: 87  QTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                +    +   P     +    D+       L
Sbjct: 147 RNNLEQILADNSGQPIEKVHVDAERDNWMSAQETL 181


>gi|148888425|gb|ABR15759.1| putative capsid protein [Wolbachia phage WO]
          Length = 136

 Score = 39.2 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   +  +++  +Q  VD  Y  F++L++ +R +  +K      G  + G +A ++GL D
Sbjct: 1   PHEPMTSESLGSLQKEVDRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59

Query: 226 VV 227
            +
Sbjct: 60  GM 61


>gi|119953393|ref|YP_945602.1| ATP-dependent Clp protease proteolytic subunit [Borrelia turicatae
           91E135]
 gi|119862164|gb|AAX17932.1| ATP-dependent Clp protease proteolytic subunit [Borrelia turicatae
           91E135]
          Length = 199

 Score = 39.2 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  +I ++  +  +DS   + V ++SPGGS  AG AI+  +Q +K   
Sbjct: 35  IIFLSGEINDVRADTVIAQLLFLESEDSKKDIYVYINSPGGSITAGLAIYDTMQYIKPDV 94

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             I      + +A  L   A     +   S +       
Sbjct: 95  RTICIGQAASMAAFLLAGGAIGKRESLSYSRIMIHQPWG 133


>gi|46241459|gb|AAS82929.1| capsid protein [Wolbachia phage WO]
          Length = 136

 Score = 39.2 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   +  ++++ +Q  V   Y  F++L++ +R +  +K      G  + G +A ++GL D
Sbjct: 1   PHEPMTSESLESLQKEVGRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59

Query: 226 VV 227
            +
Sbjct: 60  GM 61


>gi|167464584|ref|ZP_02329673.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 196

 Score = 39.2 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 65/197 (32%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I   I+D     +I ++  +S  D+   + + ++SPGGS  AG  I+  +Q +K   
Sbjct: 29  IIFIGSAIDDDVVNLVIAQLLFLSAQDADKDIHLYINSPGGSVTAGLGIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   S V     L     V+     + +    +  
Sbjct: 89  STICVGMAASMGSLLLTAGAKGKRFALPNSEVMIHQPLG---GVRGQAADIKIHADWILK 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216
           +  K                                       YDK    +D     +  
Sbjct: 146 TRKKLNEIYVH---------------------------HTGQTYDKIDKDTDRDNFLSAL 178

Query: 217 EAKKVGLIDVVGGQEEV 233
           +AK+ GLID V  + ++
Sbjct: 179 DAKEYGLIDEVITRSDL 195


>gi|187918471|ref|YP_001884034.1| ATP-dependent Clp protease proteolytic subunit [Borrelia hermsii
           DAH]
 gi|119861319|gb|AAX17114.1| ATP-dependent Clp protease proteolytic subunit [Borrelia hermsii
           DAH]
          Length = 199

 Score = 39.2 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  +I ++  +  +DS   + V ++SPGGS  +G AI+  +Q +K   
Sbjct: 35  IIFLSGEINDIRADTVIAQLLFLESEDSKKDIYVYINSPGGSITSGLAIYDTMQYIKPDV 94

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             I      + +A  L   A     +   S +       
Sbjct: 95  RTICIGQAASMAAFLLAGGAIGKRESLSYSRIMIHQPWG 133


>gi|289548353|ref|YP_003473341.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermocrinis
           albus DSM 14484]
 gi|289181970|gb|ADC89214.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermocrinis
           albus DSM 14484]
          Length = 199

 Score = 39.2 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 58/176 (32%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +   D    + + ++SPGGS  AG AI+  +Q +K     I      + +A  
Sbjct: 49  IVAQLLFLEAQDPEKDIYMYINSPGGSVTAGMAIYDTMQYIKPDVVTICIGQAASMAAVL 108

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     +   S +     +               +   + +  +K      +E+  
Sbjct: 109 LAAGAKGKRYSLPHSRIMIHQPMGGISG--------QATDIIIHAEEIKRIKHMLNEI-- 158

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227
                               +++    P  K    +      +  EA + G++D V
Sbjct: 159 --------------------IAKHTGQPLSKVEQDVERDYFMSAYEAMEYGIVDKV 194


>gi|86607602|ref|YP_476364.1| S49 family peptidase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556144|gb|ABD01101.1| peptidase S49 (protease IV) family, nonpeptidase-like protein
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 289

 Score = 38.8 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 69/186 (37%), Gaps = 22/186 (11%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS++++  I     +     ++    +PGG   A E I RA+ +   +  V   V   
Sbjct: 67  IEDSEQVLRAIRLTPPNTPIDLIL---HTPGGLVLATEQIARALIRHPAK--VTVFVPHY 121

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           A S G +++ A++ IV    +++G +            L       + V   P+      
Sbjct: 122 AMSGGTMLALAADEIVMDANAVLGPVDPQLGGYAAASIL-------QVVADKPIAEIDDQ 174

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL---------VLSDGRIWTGAE 217
              +   A + MQ V +         V   R I  ++            ++     T  E
Sbjct: 175 TLILADLARKAMQQVQNFVRDLLKDDV-PKRKIAPERIEPLIQYLTSGQVTHDYPITAEE 233

Query: 218 AKKVGL 223
           A+++GL
Sbjct: 234 AQRLGL 239


>gi|330506735|ref|YP_004383163.1| hypothetical protein MCON_0500 [Methanosaeta concilii GP-6]
 gi|328927543|gb|AEB67345.1| Protein of unknown function (DUF114) [Methanosaeta concilii GP-6]
          Length = 293

 Score = 38.8 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 6/176 (3%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS++++  I R  +D     ++    +PGG A A   I  A++    +K VI   + M
Sbjct: 82  IEDSEKVLRAIRRAQKDIPIDIIL---HTPGGLALAATQIAMALKSHPAKKTVIVPHYAM 138

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           +   G LI+ A++ I+  + + +G +               L    +  K   M  +   
Sbjct: 139 SG--GTLIAFAADQIIMDQHAALGPVDPQLGDAQGAYPATSLLAVAEKKKIDEMDDKTLV 196

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKV 221
           + E   KA+  M++++           S+   I  +      +    +   +AK +
Sbjct: 197 YVEEARKALAQMRELLQKILEGKCSDSSKLDVIINEFVSGKYTHDHPFMAEDAKAL 252


>gi|52145330|gb|AAU29369.1| putative capsid protein [Wolbachia phage WO]
 gi|52145332|gb|AAU29370.1| putative capsid protein [Wolbachia phage WO]
 gi|284927695|gb|ADC29570.1| putative capsid protein [Wolbachia phage WO]
 gi|284927697|gb|ADC29571.1| putative capsid protein [Wolbachia phage WO]
 gi|284927699|gb|ADC29572.1| putative capsid protein [Wolbachia phage WO]
 gi|284927721|gb|ADC29583.1| putative capsid protein [Wolbachia phage WO]
 gi|284927723|gb|ADC29584.1| putative capsid protein [Wolbachia phage WO]
          Length = 115

 Score = 38.8 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  FV+L++ +RN+          G  + G +A ++GL D V    E   +  +  V  +
Sbjct: 13  YEMFVQLIARNRNLSIQAIKSTEAGLYF-GEKAVEIGLADGVTTFFEFINNHKSRSVSMT 71

Query: 246 IRKIKDWNPPKNYWF 260
             ++ + N  +    
Sbjct: 72  TDELIEENYRREILE 86


>gi|89893323|ref|YP_516810.1| hypothetical protein DSY0577 [Desulfitobacterium hafniense Y51]
 gi|219666595|ref|YP_002457030.1| ATP-dependent Clp protease proteolytic subunit [Desulfitobacterium
           hafniense DCB-2]
 gi|116243100|sp|Q250C6|CLPP1_DESHY RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|89332771|dbj|BAE82366.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536855|gb|ACL18594.1| Endopeptidase Clp [Desulfitobacterium hafniense DCB-2]
          Length = 193

 Score = 38.8 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 31/191 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G + +     +I ++  +   D    +   ++SPGGS   G AI   +  +K   
Sbjct: 30  VVMLNGMVTNESASLIIAQMLFLESADCDKDIHFYINSPGGSVTDGLAIMDTMNYIKCDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I+     +A++  L + A     A   S      VL   P +   L      IK    
Sbjct: 90  STISIGQSGSAASLLLAAGAKGKRFALANS-----EVLIHQPSISGGLQGQTTDIKI--- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                 D +  +        S     P +K     +   + T  
Sbjct: 142 --------------------HSDWLTKTKEKLNETYSRLTGQPLEKIQKDMERDYYMTAG 181

Query: 217 EAKKVGLIDVV 227
           +A+  GLID +
Sbjct: 182 QAQDYGLIDKI 192


>gi|14591292|ref|NP_143370.1| nfeD protein [Pyrococcus horikoshii OT3]
 gi|3257935|dbj|BAA30618.1| 441aa long hypothetical nfeD protein [Pyrococcus horikoshii OT3]
          Length = 441

 Score = 38.8 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 6/93 (6%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSS 75
           + L+++   + +        V    I+GQI      +    I    +D +A A+I+ L +
Sbjct: 4   ILLSMIVLIFLASPILAKNIVYVAQIKGQITSYTYDQFDRYITIAEQD-NAEAIIIELDT 62

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
           PGG     +A+   +Q+++  K  +        
Sbjct: 63  PGG---RADAMMNIVQRIQQSKIPVIIYVYPPG 92


>gi|212704616|ref|ZP_03312744.1| hypothetical protein DESPIG_02679 [Desulfovibrio piger ATCC 29098]
 gi|212672015|gb|EEB32498.1| hypothetical protein DESPIG_02679 [Desulfovibrio piger ATCC 29098]
          Length = 200

 Score = 38.8 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 55/176 (31%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +  ++  +   D    + + ++SPGGS  AG AI+  ++ +      +      +  A  
Sbjct: 44  VCAQLLFLESQDPEKEINLYINSPGGSVTAGLAIYDTMRYITAPVSTVCMGRAASMGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L +    +  A   S +     L  +      +D     +  +K                
Sbjct: 104 LAAGQKGMRYALPNSQIMIHQPLGGFQGQATDVDIHAREMLRIK---------------- 147

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227
                              +++E+    YD+           T  +A + G+ID V
Sbjct: 148 --------------ERLNTMLAENTGKSYDEVVRATERDNFLTPEQALEFGIIDRV 189


>gi|297626027|ref|YP_003687790.1| ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp
           2) [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921792|emb|CBL56352.1| ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp
           2) [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 229

 Score = 38.8 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 64/194 (32%), Gaps = 30/194 (15%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I D     ++ ++  +   D    + + ++SPGGS  A  AI+  +Q +K   
Sbjct: 59  IIFLGAPITDDVANAVMAQLLSLQSMDVDRPISIYINSPGGSFTALTAIYDTMQYLKPAV 118

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +A+A  L + A    +A   S +                  L +  K +  
Sbjct: 119 QTICLGQAASAAAVLLAAGAKGQRLALPNSRILIHQPAISGEGSYGQSSDLEIQAKEI-- 176

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                            ++++++   P ++    +   +  T  
Sbjct: 177 -------------------------LRIRSLMEQMLADATGQPVERINRDVERDKYLTAE 211

Query: 217 EAKKVGLIDVVGGQ 230
           EAK+ GLID +   
Sbjct: 212 EAKEYGLIDDILTS 225


>gi|125623498|ref|YP_001031981.1| ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|18203672|sp|Q9ZAB0|CLPP_LACLM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|11528583|gb|AAD01866.2| protease [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492306|emb|CAL97240.1| ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300070250|gb|ADJ59650.1| ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 199

 Score = 38.8 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 47/155 (30%), Gaps = 2/155 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 30  IIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S           +       +          D   V+ + +K+
Sbjct: 90  QTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGQGTQQTDMAIVAEQLLKT 149

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                +    +              D        L
Sbjct: 150 RKRLEQILADNSNRSLEQIHKDAERDHWMDAKETL 184


>gi|229167033|ref|ZP_04294778.1| Integrase [Bacillus cereus AH621]
 gi|228616444|gb|EEK73524.1| Integrase [Bacillus cereus AH621]
          Length = 293

 Score = 38.8 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 11/113 (9%), Positives = 31/113 (27%), Gaps = 2/113 (1%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +++ +++     +   +++      GS Y      + ++K + +  +    +    +   
Sbjct: 181 VLDTLKKAKEKRNVKGILLHSD--QGSQYTSRQYNQLLKKYQMKASMSRRGNCWDNACME 238

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
                         S   +  V         F +      K    SP K    
Sbjct: 239 NFFSHFKAECFHLYSFRKANEVKLAVRKYMHFYNHQRFQKKLNNLSPYKYRTQ 291


>gi|46241449|gb|AAS82924.1| capsid protein [Wolbachia phage WO]
 gi|46241463|gb|AAS82931.1| capsid protein [Wolbachia phage WO]
          Length = 136

 Score = 38.8 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   +  ++++ +Q  V   Y  F++L++ +R +  +K      G  + G +A ++GL D
Sbjct: 1   PHEPMTSESLESLQKEVGRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAAEIGLAD 59

Query: 226 VV 227
            +
Sbjct: 60  GM 61


>gi|28198386|ref|NP_778700.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
           Temecula1]
 gi|182681028|ref|YP_001829188.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
           M23]
 gi|32129456|sp|Q87E51|CLPP_XYLFT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706560|sp|B2I8K3|CLPP_XYLF2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|28056456|gb|AAO28349.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
           Temecula1]
 gi|182631138|gb|ACB91914.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Xylella
           fastidiosa M23]
 gi|307579496|gb|ADN63465.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 208

 Score = 38.8 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D     ++ ++  +  ++    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 36  LIFLVGPIDDYMANLIVAQLLFLEAENPEKDINIYINSPGGVVTAGMAIYDTMQYIKPAV 95

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S AS    A   S V     L  +      +D           
Sbjct: 96  STICVGQAASMGALLLASGASGKRYALPNSRVMIHQPLGGFQGQATDIDIHARE------ 149

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   + +       ++++      +            +  
Sbjct: 150 ------------------------ILALRARLNEILAKHTGQSLETIAHDTERDNFKSAV 185

Query: 217 EAKKVGLIDVVGGQEE 232
           +A+  GL+D V GQ +
Sbjct: 186 DAQAYGLVDQVFGQRQ 201


>gi|313114091|ref|ZP_07799643.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623500|gb|EFQ06903.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 198

 Score = 38.8 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 55/181 (30%), Gaps = 26/181 (14%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  ++ ++  +   D    + + ++SPGGS  AG AI   +Q +K     I      +
Sbjct: 39  TSASLVVAQLLYLEGQDPDKDISLYINSPGGSISAGMAIHDTMQYIKCDVSTICMGMAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L S       A   S +     L              + I               
Sbjct: 99  MGAFLLASGTKGKRFALPNSEILIHQPLIGGQGGGLSGQTTDIKIH-------------- 144

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226
                       + +        R++SE    P +K           +  +AK+ GLID 
Sbjct: 145 -----------AEHMVYIRDKMNRMLSEYTGQPLEKIQLDTERDNYMSALQAKEYGLIDE 193

Query: 227 V 227
           V
Sbjct: 194 V 194


>gi|288961083|ref|YP_003451422.1| 2-nitropropane dioxygenase [Azospirillum sp. B510]
 gi|288913391|dbj|BAI74878.1| 2-nitropropane dioxygenase [Azospirillum sp. B510]
          Length = 334

 Score = 38.8 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 19/177 (10%)

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           DD    LI+              I  A++ ++   PVI                     +
Sbjct: 163 DDDIGGLIL--------------IPAAVKALR--IPVIASGGIGDGRGMAAALVLGAEGI 206

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
              T    +             + +       +  +         + ++ + V M +   
Sbjct: 207 NMGTRFCATKEAPIHDNIKMAMVQRTERDTNLILRTLGNTGRCLKNPISDEVVTMERREG 266

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
              +     LV+ +R     +T  ++DG IW G     VGLID +   EE+ + +  
Sbjct: 267 GVRFEEIHHLVAGARGRKALETGDVNDGLIWGGQ---VVGLIDDIPSCEELLERMVG 320


>gi|116074798|ref|ZP_01472059.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RS9916]
 gi|116068020|gb|EAU73773.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RS9916]
          Length = 196

 Score = 38.8 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 59/184 (32%), Gaps = 31/184 (16%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
            +  ++ ++  +  +D    + + ++SPGGS Y G  IF  +Q +K     +      + 
Sbjct: 38  SANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASM 97

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
            A  L + A     +   S +     L            + +    +     K       
Sbjct: 98  GAFLLCAGAKGKRSSLRHSRIMIHQPLG---GASGQASDIRIQADEILFLKDK------- 147

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                                 R ++E    P +K  V +D   + +  EA   GLID V
Sbjct: 148 --------------------LNRELAERSGQPLEKMQVDTDRDFFMSPDEAVTYGLIDTV 187

Query: 228 GGQE 231
             + 
Sbjct: 188 IDRR 191


>gi|83644345|ref|YP_432780.1| membrane-bound serine protease (ClpP class) [Hahella chejuensis
           KCTC 2396]
 gi|83632388|gb|ABC28355.1| Membrane-bound serine protease (ClpP class) [Hahella chejuensis
           KCTC 2396]
          Length = 461

 Score = 38.8 bits (88), Expect = 0.87,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 66/227 (29%), Gaps = 19/227 (8%)

Query: 26  SWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           S  +    + P V  + I+G I    +   +  +E  +    A+  ++ L +PGG   + 
Sbjct: 34  SNVNASARHPPQVWTLDIQGAIGPASADLFMRALEEANE-AGASLFLLRLDTPGGLDKSM 92

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
             + +AI                 A++       S+ I     ++  +  +    P    
Sbjct: 93  RDMIQAILASSTPVAAYVYPKGARAASAGTYILFSSHIA----AMAPATNLGAATPISIT 148

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
                     +      K   +                ++ +  +   L           
Sbjct: 149 APSSSPSKPDTDAEGDEKGLSTL-----------EHKQINDAVAYIQGLAKLRGRNTEWA 197

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSLYALGVDQSIRKI 249
              + D    +  EA ++ ++D++    E++   L    V      +
Sbjct: 198 EQAVRDAASLSAEEALQMNVVDMMADSTEQLLAQLEGREVKLDNGAV 244


>gi|229828304|ref|ZP_04454373.1| hypothetical protein GCWU000342_00362 [Shuttleworthia satelles DSM
           14600]
 gi|229792898|gb|EEP29012.1| hypothetical protein GCWU000342_00362 [Shuttleworthia satelles DSM
           14600]
          Length = 190

 Score = 38.8 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 54/178 (30%), Gaps = 31/178 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGG    G AI+  +  +K     I      +  A  
Sbjct: 41  IVAQLLFLESEDPNKDIHLYINSPGGVVTCGMAIYDTMNYIKPDVSTICIGMAASMGAFL 100

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L   A     A   + +            K    ++ ++ +S+  +  K           
Sbjct: 101 LAGGAKGKRYALPNAEIMIHQPSG---GAKGQATEIEIAAESILKTKRKMNQIL------ 151

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGG 229
                                +++    Y++              EA + G++D +  
Sbjct: 152 ---------------------ADNTGKTYEQVAADTERDHYLDAKEALEYGIVDQIID 188


>gi|298674533|ref|YP_003726283.1| hypothetical protein Metev_0576 [Methanohalobium evestigatum
           Z-7303]
 gi|298287521|gb|ADI73487.1| protein of unknown function DUF114 [Methanohalobium evestigatum
           Z-7303]
          Length = 276

 Score = 38.8 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 12/181 (6%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IED++ ++  I   + +     +     +PGG  +    I RA++   N    +   H  
Sbjct: 76  IEDAESILRGIRNTANNRPIDII---AHTPGGQVHPSIQIARALKNH-NGHTRVMIPHYS 131

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            +    +   A  II+  +  +      L               ++    S         
Sbjct: 132 MSGGTIIALAADEIIMDDDAVIGPIDPQLGDLIRGTYPAPSWINAV----SQKGANAADT 187

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLV--SESRNIPYDKTL--VLSDGRIWTGAEAKKVG 222
              ++  + + M+ +   +       +   E RN   +K +   +      + +EA  +G
Sbjct: 188 TIVLSDISEKTMKLMRKVANELLEGKIEDEEKRNYVVEKLVSGEMVHITPISASEAADIG 247

Query: 223 L 223
           L
Sbjct: 248 L 248


>gi|284161665|ref|YP_003400288.1| hypothetical protein Arcpr_0550 [Archaeoglobus profundus DSM 5631]
 gi|284011662|gb|ADB57615.1| protein of unknown function DUF114 [Archaeoglobus profundus DSM
           5631]
          Length = 285

 Score = 38.8 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 58/177 (32%), Gaps = 9/177 (5%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS++++  I    +D     +I    +PGG   A   I +A++    +  VI   + M
Sbjct: 76  IEDSEQVLRAIRMTPKDQPIDLII---HTPGGLVLAATQIAKALKNHPAKTTVIVPHYAM 132

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            +    +   A  II+     L      L  YP             K V    +      
Sbjct: 133 -SGGTLIALAADEIIMDPNAVLGPVDPQLMNYPAPSIINAVKKKDPKDVDDQTLILADIA 191

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
              +N     + + + D       R V+             +     T   AK++GL
Sbjct: 192 EKAINQVRQFVYELLKDKMEDEKAREVA-----RILTEGRWTHDYPITVEVAKELGL 243


>gi|94987236|ref|YP_595169.1| protease subunit of ATP-dependent Clp proteases [Lawsonia
           intracellularis PHE/MN1-00]
 gi|116243147|sp|Q1MQ79|CLPP_LAWIP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|94731485|emb|CAJ54848.1| Protease subunit of ATP-dependent Clp proteases [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 209

 Score = 38.8 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 50/176 (28%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +  ++  +   D    + + ++SPGGS  AG AI+  +  +      +      +  A  
Sbjct: 49  ICAQLLFLESQDPEKEIYLYINSPGGSVTAGLAIYDTMNYITPNVATVCMGRAASMGALL 108

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L +   N+  A   S V     L  Y      +D                          
Sbjct: 109 LAAGEKNMRYALPNSQVMIHQPLGGYQGQATDIDIHARE--------------------- 147

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227
                    +         ++ E      +K           T  +AK  GLID V
Sbjct: 148 ---------ILRMRQRLNEILMEQTGQSLEKVAQDTERDYFMTAEDAKAYGLIDKV 194


>gi|254224908|ref|ZP_04918523.1| Protease subunit of ATP-dependent Clp proteases [Vibrio cholerae
           V51]
 gi|125622596|gb|EAZ50915.1| Protease subunit of ATP-dependent Clp proteases [Vibrio cholerae
           V51]
          Length = 292

 Score = 38.8 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 82/237 (34%), Gaps = 38/237 (16%)

Query: 41  IAIRGQIEDS----QEL-IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95
           I I G I +     + + ++RI+   R      + V ++SPGG  + G AI   +Q+  +
Sbjct: 43  ITIYGVIGEDWWTGEGVTVKRIDAALRSIGDKPVTVYINSPGGDMWEGIAIHNRLQEH-S 101

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
           +K  I  +   A++A  +   + +  +A  + L+                          
Sbjct: 102 QKVTIKVIGIAASAASIIAMASDDRQIATSSFLMI------------------------- 136

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT- 214
                          N   ++ M D ++        + +++   P ++   + D   +  
Sbjct: 137 ------HNCWTCICGNRHFMREMADTMEEFDMAMADVYADTSGQPVEEMSRMMDAESYIR 190

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271
           G +A ++GL   +    EV ++        +  K  D    K       +    S+L
Sbjct: 191 GKKAVELGLCTSIIDPSEVKETNDEESKQANALKAMDMALAKTGMPRAKRRELFSNL 247


>gi|268611147|ref|ZP_06144874.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Ruminococcus flavefaciens FD-1]
          Length = 306

 Score = 38.8 bits (88), Expect = 0.89,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 56/198 (28%), Gaps = 47/198 (23%)

Query: 40  RIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            + + G I+           Q+  + +   + D     L + ++SPGG+ +A   I+  I
Sbjct: 16  VLRLEGPIDSDSFWGDEITPQDFRDELY--AEDGD---LTLWINSPGGNVFAAAEIYTMI 70

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
           +   +   V                     I +   S    I +      + P    +  
Sbjct: 71  RDYPHNVTV--------------------RIASIAASAASVIAMAGNTVQMSPTALLMIN 110

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
              ++     K      + +N                  +   +    +  ++   L   
Sbjct: 111 DPSTIAFGNAKDMEKAIATLNE------------VKESIINAYAAKTGLSRNRISKLMSD 158

Query: 211 RIW-TGAEAKKVGLIDVV 227
             W    +A ++G  D +
Sbjct: 159 ETWINAKKAVELGFADEI 176


>gi|210621780|ref|ZP_03292809.1| hypothetical protein CLOHIR_00754 [Clostridium hiranonis DSM 13275]
 gi|210154544|gb|EEA85550.1| hypothetical protein CLOHIR_00754 [Clostridium hiranonis DSM 13275]
          Length = 195

 Score = 38.8 bits (88), Expect = 0.89,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 53/178 (29%), Gaps = 31/178 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGGS  AG AI+  +  +K     I      +  A  
Sbjct: 44  IVAQLLFLEAEDPDKDIHLYINSPGGSITAGMAIYDTMNYIKPDVSTICIGMAASMGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L S A     A   S +     L         ++                          
Sbjct: 104 LSSGAKGKRYALPNSEIMIHQPLGGAQGQATEIEIRAKR--------------------- 142

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGG 229
                    +        +++SE+   P +K              EA   GLID V  
Sbjct: 143 ---------IIRMKEKLNQILSENTGQPLEKIMADTERDNFMEADEALAYGLIDEVIT 191


>gi|46198490|ref|YP_004157.1| enoyl-CoA hydratase [Thermus thermophilus HB27]
 gi|46196112|gb|AAS80530.1| enoyl-CoA hydratase [Thermus thermophilus HB27]
          Length = 253

 Score = 38.8 bits (88), Expect = 0.89,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 68/246 (27%), Gaps = 35/246 (14%)

Query: 31  VEDNSPHVARIAIRGQ----IEDSQ---ELIERIERISRDDSATALIVSLSSPGGSAYAG 83
           V+    HVA + +           +    L++ ++ +  D    A+++            
Sbjct: 2   VQVEKGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVLL------------ 49

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
                        +          A    +    +        SL+     ++ YP    
Sbjct: 50  -----------TGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTV 98

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
                 V+  +V      A       ++ +A     +V        V ++          
Sbjct: 99  AA----VNGPAVAGGAGLATACDLVVMDEEARLGYTEVKIGFVAALVSVILVRAVGEKAA 154

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
             +L  GR+    EAK +GL++ +    +  +   AL  + +          K      L
Sbjct: 155 KDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAVALAEEVAKNAPTSLRLTKELLLA-L 213

Query: 264 KNLSIS 269
             + + 
Sbjct: 214 PGMGLE 219


>gi|306825611|ref|ZP_07458950.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304431972|gb|EFM34949.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 196

 Score = 38.8 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 2/155 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   DS   + + +++PGGS  AG AI   +  +K   
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +K+
Sbjct: 87  QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                +    +         +    D        L
Sbjct: 147 RKTLEQILADNSGKTVEQIHVDAERDYWMSAQETL 181


>gi|225856422|ref|YP_002737933.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae P1031]
 gi|254763806|sp|C1CJJ5|CLPP_STRZP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|225724460|gb|ACO20312.1| Clp protease [Streptococcus pneumoniae P1031]
          Length = 196

 Score = 38.8 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 2/155 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   DS   + + +++PGGS  AG AI   +  +K   
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +K+
Sbjct: 87  QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                +    +              D+       L
Sbjct: 147 RNTLEKILAENSGQSMEKVHADAERDNWMSAHETL 181


>gi|88812667|ref|ZP_01127914.1| probable transmembrane protein [Nitrococcus mobilis Nb-231]
 gi|88790083|gb|EAR21203.1| probable transmembrane protein [Nitrococcus mobilis Nb-231]
          Length = 453

 Score = 38.8 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 70/229 (30%), Gaps = 12/229 (5%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSL 73
            ++   +   + ++    ++     + I G I    S  +   + R      A  +I+ +
Sbjct: 4   IVLASLLWLLTVATAAVASNERALLLRIDGAIGPAISDHITTELTRAEH-QGAALVILEM 62

Query: 74  SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133
            +PGG   +   I +AI                 A++            +   ++     
Sbjct: 63  DTPGGLDTSMRDIIQAILSSSVPVVSYVAPSGSRAASAGTYIL----YASHVAAMAPGTN 118

Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193
           +    P     +             P K +    +EV        + V D+  +      
Sbjct: 119 IGAATPVRIGGMPGAPSPRP--DKEPDKGDREEGNEVTSATPMERKMVNDAVAYIRSLAE 176

Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
              RN  + +   + +       +A ++ +IDV+   + V Q L  +  
Sbjct: 177 LRGRNADWAE-KAVREAASLPAHQALEMKVIDVMA--DNVAQLLRKIDG 222


>gi|218891274|ref|YP_002440141.1| ClpP protease [Pseudomonas aeruginosa LESB58]
 gi|218771500|emb|CAW27267.1| ClpP protease [Pseudomonas aeruginosa LESB58]
          Length = 296

 Score = 38.8 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 78/251 (31%), Gaps = 41/251 (16%)

Query: 45  GQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH 104
           G+   ++ +   +  I  D   T   V+++SPGG  + G AI+  +++   +  V   + 
Sbjct: 59  GEGVTAKRIAGALRSIGSDIDVT---VNINSPGGDVFEGLAIYNLLREH--KGKVTVNII 113

Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164
            +AASA   I+ A + I     + +            +  L ++                
Sbjct: 114 GLAASAASFIAMAGDEIRIGRAAFLMIHNAWLIAMGNRNDLREIAD-------------- 159

Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-AEAKKVGL 223
                            ++        + ++   I  D  +   D   W G  EA   G 
Sbjct: 160 ----------------WLEPFDMTLADIYAQRTGIDIDDIVKQMDAETWIGGREAVDKGW 203

Query: 224 IDVVGGQEEVW-----QSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278
            D     +E+      +S   L   +    +     P++     + +   S L       
Sbjct: 204 ADAFLESDEISSAPSNRSEAILAKRRMDAALARSGMPRSQRNELINDFKTSMLGAAGGGG 263

Query: 279 MKQTKVQGLWA 289
              T + G  A
Sbjct: 264 DTPTDMPGAVA 274


>gi|183179518|ref|ZP_02957729.1| Clp protease [Vibrio cholerae MZO-3]
 gi|183012929|gb|EDT88229.1| Clp protease [Vibrio cholerae MZO-3]
          Length = 156

 Score = 38.8 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             +      +  A  L   A         S V     L 
Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLG 140


>gi|148242503|ref|YP_001227660.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RCC307]
 gi|147850813|emb|CAK28307.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           RCC307]
          Length = 196

 Score = 38.8 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 60/182 (32%), Gaps = 31/182 (17%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
            +  ++ ++  +  +D    + + ++SPGGS Y G  IF  +Q VK     +      + 
Sbjct: 38  SANRIVAQLLFLEAEDPDKDIFLYINSPGGSVYDGLGIFDTMQHVKPDVQTVCVGLAASM 97

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
            A  L + A     + + S +     L                                 
Sbjct: 98  GAFLLAAGAPGKRSSLQHSRIMIHQPLGGAQGQ--------------------------- 130

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                 +++  D +          +++    P D+    +D   + + AEA + GLID V
Sbjct: 131 ---ASDIRIQADEILFLKKRLNEELAQRTGQPLDRIQKDTDRDFFMSPAEAAEYGLIDKV 187

Query: 228 GG 229
             
Sbjct: 188 ID 189


>gi|284044102|ref|YP_003394442.1| ATP-dependent Clp protease proteolytic subunit ClpP [Conexibacter
           woesei DSM 14684]
 gi|283948323|gb|ADB51067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Conexibacter
           woesei DSM 14684]
          Length = 194

 Score = 38.8 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGGS YAG AI+  +Q +K     I     M+  A  
Sbjct: 45  IVAQLLHLESEDPDKDISIYINSPGGSVYAGLAIYDTMQFIKPDVQTICVGIAMSMGALL 104

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L   A    +A   + +    V   +      ++     I  +                 
Sbjct: 105 LSGGARGKRMALPNAKILIHQVSSSFQGQATDIEIHAREIIDI----------------- 147

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                              +++     P D+    ++   + +  EAK  G+ID V
Sbjct: 148 -------------RRRLDEIIALHSGKPVDEVKKDTERDYFMSSEEAKDYGIIDRV 190


>gi|306829178|ref|ZP_07462368.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus mitis
           ATCC 6249]
 gi|304428264|gb|EFM31354.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus mitis
           ATCC 6249]
          Length = 196

 Score = 38.8 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 59/192 (30%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   DS   + + +++PGGS  AG AI   +  +K   
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +K+
Sbjct: 87  QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                            ++++++     ++    ++   W +  
Sbjct: 147 RK----------------------------TLEQILADNSGKSVEQIHADAERDYWMSAQ 178

Query: 217 EAKKVGLIDVVG 228
           E  + G ID + 
Sbjct: 179 ETLEYGFIDEIM 190


>gi|302390303|ref|YP_003826124.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermosediminibacter oceani DSM 16646]
 gi|302200931|gb|ADL08501.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermosediminibacter oceani DSM 16646]
          Length = 200

 Score = 38.8 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 57/198 (28%), Gaps = 35/198 (17%)

Query: 35  SPHVARI--AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
              +  I   I   I     +I ++  +  +D    + + ++SPGGS  AG AI+  +Q 
Sbjct: 26  KDRIVFIGTPIDDSIASL--VIAQLLFLESEDPDKDIYLYINSPGGSVTAGLAIYDTMQY 83

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           +K     I      +  A  L   A    +A   S +               ++      
Sbjct: 84  IKPDVSTICIGMAASMGAVLLAGGAPGKRLALPNSRIMIHQPWGGVQGRALDIETHAKE- 142

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGR 211
                                        +         ++ +    P ++         
Sbjct: 143 -----------------------------ILRLREVLNEILVKHTKQPLERIERDTERDY 173

Query: 212 IWTGAEAKKVGLIDVVGG 229
             +  EAK+ GLID V  
Sbjct: 174 FMSAVEAKQYGLIDEVIY 191


>gi|188589670|ref|YP_001921112.1| peptidase S14, ClpP [Clostridium botulinum E3 str. Alaska E43]
 gi|188499951|gb|ACD53087.1| peptidase S14, ClpP [Clostridium botulinum E3 str. Alaska E43]
          Length = 377

 Score = 38.8 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 65/189 (34%), Gaps = 35/189 (18%)

Query: 44  RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103
            GQI  S +  E+++     D+ T   V ++S GG  +   AI+  ++    +  +  ++
Sbjct: 32  DGQITAS-DFKEQLDLYKDRDNIT---VRINSNGGDVFTASAIYTLLK--DCKASITVKI 85

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
             MA SA  +++ A + ++   TS+      L                            
Sbjct: 86  DGMAMSAATVVAMAGDKVLIPSTSIFMIHDPLA--------------------------- 118

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVG 222
                  N   ++ + + +    +  +       +   ++   L    +W TG +A   G
Sbjct: 119 -GLCGYYNVSDLEKVINRLSVVKNTIINAYINKTDKTKEEIEDLMTNELWLTGEDAVNEG 177

Query: 223 LIDVVGGQE 231
             D V   E
Sbjct: 178 FCDEVMFSE 186


>gi|15606541|ref|NP_213921.1| ATP-dependent Clp protease proteolytic subunit [Aquifex aeolicus
           VF5]
 gi|6225158|sp|O67357|CLPP_AQUAE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|2983755|gb|AAC07315.1| ATP-dependent Clp protease proteolytic subunit [Aquifex aeolicus
           VF5]
          Length = 201

 Score = 38.8 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 56/176 (31%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +   D    + + ++SPGGS  AG AI+  +Q +K     I      +  A  
Sbjct: 51  IVAQLLFLESQDPDKDIYLYINSPGGSVTAGLAIYDTMQYIKPDVVTICMGQAASMGAIL 110

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     A   S +     L                                     
Sbjct: 111 LAAGAPGKRYALPHSRIMIHQPLGGIQGQ------------------------------A 140

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227
             + +  + +       + ++++    P DK    +      +  EAK  GLID V
Sbjct: 141 TDIIIHAEEIKRIKEMLIDILAKHTGQPKDKIANDIERDYFMSPYEAKDYGLIDKV 196


>gi|323149170|ref|YP_004221999.1| ATP-dependent Clp protease proteolytic subunit [Coccomyxa sp.
           C-169]
 gi|317467226|gb|ADV29847.1| ATP-dependent Clp protease proteolytic subunit [Coccomyxa sp.
           C-169]
          Length = 195

 Score = 38.8 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 57/183 (31%), Gaps = 33/183 (18%)

Query: 50  SQELIERI----ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
             EL  ++      ++ ++ +  L + ++SPGGS   G A++ ++  VK     I     
Sbjct: 40  DDELANQLIGIMLYLNAEEKSKGLYIYINSPGGSVTCGIAVYDSMNYVKADVTTICVGTA 99

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
            + ++  L        +A   S +                                    
Sbjct: 100 ASMASFVLAGGDRGKRIALPHSRIMIHQPEG---------------------GSQGQASE 138

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
             SE +       Q     +      L   SR++  D+          +  EAK+ GL+D
Sbjct: 139 VLSESSEVMRIRRQVGKIYAERTGQPLSRISRDMDRDQ--------FMSAREAKEYGLVD 190

Query: 226 VVG 228
            V 
Sbjct: 191 QVA 193


>gi|116334974|ref|YP_802469.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Carsonella ruddii PV]
 gi|122940475|sp|Q05FR8|CLPP_CARRP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116235255|dbj|BAF35103.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Carsonella ruddii PV]
          Length = 194

 Score = 38.8 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 3/120 (2%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IED+    ++ ++      +++  +I+ ++SPGG   +G +I+  IQ +K+  
Sbjct: 29  VIYLNGAIEDTMASLIVSQL-MFLDSENSKDIILYINSPGGVVSSGLSIYDTIQFLKSDV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L +           S +     L         ++     + ++K 
Sbjct: 88  STICIGQAASMAAVLLAAGKKGKRFCFPNSRIMIHQPLGYAQGQASDVEIHAREMINIKQ 147


>gi|293365057|ref|ZP_06611774.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           oralis ATCC 35037]
 gi|307702233|ref|ZP_07639193.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Streptococcus oralis ATCC 35037]
 gi|315612826|ref|ZP_07887737.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|331266748|ref|YP_004326378.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           oralis Uo5]
 gi|291316507|gb|EFE56943.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           oralis ATCC 35037]
 gi|307624246|gb|EFO03223.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Streptococcus oralis ATCC 35037]
 gi|315314936|gb|EFU62977.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|326683420|emb|CBZ01038.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           oralis Uo5]
          Length = 196

 Score = 38.8 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 59/192 (30%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   DS   + + +++PGGS  AG AI   +  +K   
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +K+
Sbjct: 87  QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                            ++++++     ++    ++   W +  
Sbjct: 147 RK----------------------------TLEQILADNSGKSVEQIHADAERDYWMSAQ 178

Query: 217 EAKKVGLIDVVG 228
           E  + G ID + 
Sbjct: 179 ETLEYGFIDEIM 190


>gi|325294216|ref|YP_004280730.1| ATP-dependent Clp protease proteolytic subunit [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064664|gb|ADY72671.1| ATP-dependent Clp protease proteolytic subunit [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 200

 Score = 38.8 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 70/229 (30%), Gaps = 33/229 (14%)

Query: 5   LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISR 62
           +++I  ++V + +        ++  +       +  I +   I+D  +  ++ ++  +  
Sbjct: 1   MEEILNQFVPIVIEQTGRGERAYDIYSRLLKDRI--IMLGTPIDDHVANLIVAQLLFLEA 58

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           +D    + + ++SPGG   AG AI+  +Q +K     I      +  A  L + A     
Sbjct: 59  EDPEKDIYLYINSPGGVVTAGLAIYDTMQYIKPDVVTICLGQAASMGAVLLAAGAKGKRF 118

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A   + +     L                                               
Sbjct: 119 ALPHARIMIHQPLG---------------------GFQGQATDIEIHAKEILRLKKMLNE 157

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
             S H    L    R I  D           +  EA+K GLID V  + 
Sbjct: 158 ILSKHTGQSL----RKIEKDTERDY----FMSAEEAQKYGLIDKVLTRR 198


>gi|255994401|ref|ZP_05427536.1| Clp protease [Eubacterium saphenum ATCC 49989]
 gi|255993114|gb|EEU03203.1| Clp protease [Eubacterium saphenum ATCC 49989]
          Length = 196

 Score = 38.8 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 61/195 (31%), Gaps = 31/195 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I   IE   +  +I ++  +  +DS+  + + ++SPGG   +G AI+  +Q +K + 
Sbjct: 29  IIFIGEPIESNMASSIIAQLLFLEAEDSSKDICIYINSPGGDVTSGLAIYDTMQFIKPQV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      + +A  L++       A   S +     +           ++ ++ + +  
Sbjct: 89  QTVCVGMAASMAAVLLLAGEKGKRFALPNSEIMIHQPMG---GASGQASEIKIAAEHIIK 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
           +  K                                                 +  T  E
Sbjct: 146 TRDKLNRLISKHTT--------------------------KNLSTIEEDTDRDKYMTANE 179

Query: 218 AKKVGLIDVVGGQEE 232
           A   G+ID V    +
Sbjct: 180 ALDYGIIDSVLKSRD 194


>gi|77411264|ref|ZP_00787614.1| ClpP protease family protein [Streptococcus agalactiae CJB111]
 gi|77162690|gb|EAO73651.1| ClpP protease family protein [Streptococcus agalactiae CJB111]
          Length = 232

 Score = 38.8 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 64/205 (31%), Gaps = 37/205 (18%)

Query: 33  DNSPHVARIAIRGQIEDSQELIERIE-RISRDDSATA---LIVSLSSPGGSAYAGEAIFR 88
            +   V  + I GQI D     + +  +  ++D  +    + + ++SPGG  +A   I+ 
Sbjct: 8   TDEGGVRTLRIEGQIADETWFGDEVTPQQFKNDLISGTGDITLWINSPGGDVFAAAQIYN 67

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
            +   +    VI     +AASA  +I+ A   +  +  +++                   
Sbjct: 68  MLMDYQGDVHVII--DGLAASAASVIAMAGTTVSMSPVAMMMIHN--------------- 110

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
                +      K        +                   +        +   K   L 
Sbjct: 111 ---PWTFAQGEAKDMAKVIEMLGE------------IKESIINAYELRTGLSRTKISHLM 155

Query: 209 DGRIW-TGAEAKKVGLIDVVGGQEE 232
           D   W    +A ++G  D V  ++E
Sbjct: 156 DSESWFNAKKAVELGFADKVLFEKE 180


>gi|316936727|gb|ADU60358.1| capsid protein [Wolbachia phage WO]
 gi|316936729|gb|ADU60359.1| capsid protein [Wolbachia phage WO]
          Length = 137

 Score = 38.8 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
               +  ++++ +Q  VD  Y  FV+L++ +R +  +K      G  + G +A ++GL D
Sbjct: 2   HMEPMTSESLESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAIEIGLAD 60

Query: 226 VV 227
            +
Sbjct: 61  GI 62


>gi|121534385|ref|ZP_01666209.1| protein of unknown function DUF114 [Thermosinus carboxydivorans
           Nor1]
 gi|121307155|gb|EAX48073.1| protein of unknown function DUF114 [Thermosinus carboxydivorans
           Nor1]
          Length = 277

 Score = 38.8 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 4/149 (2%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+ ++  I     D       + L +PGG   A E I  A+ +    K  +   H  
Sbjct: 67  IEDSEHILRAIRLTPDDMPID---LVLHTPGGLVLASEQIAHALMRHPA-KVTVFVPHYA 122

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            +    +   A  I++     L      L QYP           SI  V  + +      
Sbjct: 123 MSGGTMIALAADEIVMDCNAVLGPVDPQLGQYPAASILKAVKQKSIDRVDDNTLIMADIA 182

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
              +      + + + D       R +++
Sbjct: 183 EKAIKQVEDFVARLLSDKMDAEKARELAK 211


>gi|322387412|ref|ZP_08061022.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           infantis ATCC 700779]
 gi|321141941|gb|EFX37436.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           infantis ATCC 700779]
          Length = 196

 Score = 38.8 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 2/155 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   DS   + + +++PGGS  AG AI   +  +K   
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +K+
Sbjct: 87  QTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                +    +              D        L
Sbjct: 147 RKTLEQILADNSGKSVEQIHKDAERDYWMSAQETL 181


>gi|168013186|ref|XP_001759282.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689595|gb|EDQ75966.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 205

 Score = 38.8 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 50/181 (27%), Gaps = 29/181 (16%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
            +  +I ++  +   D    + + ++SPGGS  AG  I+ A++  K     +      + 
Sbjct: 26  SADVIISQLLLLDAQDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCFGLAASM 85

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
            A  L +           + V     L                     +     + +   
Sbjct: 86  GAFLLAAGTKGKRYCMPNARVMIHQPLG-------------------GAGGTAIDGALQV 126

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
                    +Q ++          V                       EAK+ GL+D V 
Sbjct: 127 REMMYHKYKLQKIMSRLTGQPEAKVEA----------DTDRDNFMNAWEAKEYGLVDGVI 176

Query: 229 G 229
           G
Sbjct: 177 G 177


>gi|327439480|dbj|BAK15845.1| protease subunit of ATP-dependent Clp protease [Solibacillus
           silvestris StLB046]
          Length = 245

 Score = 38.8 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 74/207 (35%), Gaps = 21/207 (10%)

Query: 33  DNSPHVARIAIRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           D    V+ + I G I          + ++   +++   +D    ++V L+SPGGSA+ G 
Sbjct: 28  DEEKGVSELTIYGDIGESWFWDSTSAVDVDNALKQAGTND----IVVRLNSPGGSAFDGI 83

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG----VLFQYPY 140
           AI+  +++   +  V   V   A SA  +I+ A + ++    +++        V      
Sbjct: 84  AIYNRLKEHPGK--VTIHVDGWACSAASIIAMAGDEVIMGTGAMMMIHEASNIVWGTKND 141

Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200
           ++   D L      +    M        E+  +           +        +      
Sbjct: 142 MRKVADMLEELEAGIVDVYMTKAKISREEITEQMNAETWFSALKAVEIGFATSTALTVEG 201

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVV 227
            D++  ++  R     +A +   ID +
Sbjct: 202 KDESEEMTQMRAQM--QAMQNK-IDEL 225


>gi|168236909|ref|ZP_02661967.1| ClpP protease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194734371|ref|YP_002117151.1| ClpP protease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194709873|gb|ACF89094.1| ClpP protease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290051|gb|EDY29410.1| ClpP protease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 282

 Score = 38.8 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 64/243 (26%), Gaps = 12/243 (4%)

Query: 57  IERISRDDS-ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
           I+  + DD+  +   V      G     + I  A++ +      +            L  
Sbjct: 34  IKAAATDDNSISVFDVIGQDYWGEGVTAKRIAGALRAMNGADVTVNINSPGGDMFEGLAI 93

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
                    + ++            +    D + +   +             +  N    
Sbjct: 94  YNLLREYQGKVTVKVLGIAASAASVIAMAGDDIQIGRGAFLM---IHNCWVVAMGNRHDF 150

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-AEAKKVGLIDVVGGQEEV- 233
             +   ++   +    + +    +       L D   + G ++A + GL D +   + V 
Sbjct: 151 AELSASLEPFDNAMADIYAARSGLDMVTVQKLMDAESYIGGSDAVEKGLADSLLSADAVS 210

Query: 234 ------WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
                   +L  L    +          K            ++  + T    ++ K + +
Sbjct: 211 DGDETPAAALRKLDALLAKTSTPRSERRKLIKALSGGMSGAATNHDGTPGAAEEIKPEVI 270

Query: 288 WAV 290
            ++
Sbjct: 271 NSL 273


>gi|60389777|sp|Q891J7|CLPP_CLOTE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 194

 Score = 38.8 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 31/177 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGGS  +G AI+  +Q +K     I      +  A  
Sbjct: 44  IVAQLLFLEAEDPDKDIFLYINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     A   S +     L  +                                  
Sbjct: 104 LAAGAKGKRFALPNSEIMIHQPLGGFQGQ------------------------------A 133

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVG 228
             + +  D +         ++SE    P +               +AK  GLID V 
Sbjct: 134 TDIGIHADRILKIKQNLNSILSEKTGQPLEVIQRDTERDNFMDANQAKDYGLIDEVM 190


>gi|86137328|ref|ZP_01055905.1| Protease subunit of ATP-dependent Clp protease [Roseobacter sp.
           MED193]
 gi|85825663|gb|EAQ45861.1| Protease subunit of ATP-dependent Clp protease [Roseobacter sp.
           MED193]
          Length = 202

 Score = 38.8 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 58/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++ +  + + ++SPGG   +G +I+  +Q +K + 
Sbjct: 30  IIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +  + +  +   S V        +                   
Sbjct: 90  STLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMVHQPSGGFQGQ---------------- 133

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            + +  +           +  +      DK    L         
Sbjct: 134 --------------ATDIMIHAEETLKLKRRLNEIYVKHTGQELDKVEAALERDNFMDPE 179

Query: 217 EAKKVGLIDVV 227
           EAK  GLID +
Sbjct: 180 EAKAFGLIDEI 190


>gi|320547331|ref|ZP_08041622.1| ATP-dependent Clp protease, protease subunit [Streptococcus equinus
           ATCC 9812]
 gi|320448029|gb|EFW88781.1| ATP-dependent Clp protease, protease subunit [Streptococcus equinus
           ATCC 9812]
          Length = 196

 Score = 38.8 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 58/192 (30%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 27  IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S           +       +          D    +   +  
Sbjct: 87  QTIVMGIAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      +     ++++++     +K    ++   W +  
Sbjct: 145 --------------------------KTRQNLEQILADNSGQTLEKVHADAERDNWMSAQ 178

Query: 217 EAKKVGLIDVVG 228
           E  + G ID + 
Sbjct: 179 ETLEYGFIDEIM 190


>gi|295695312|ref|YP_003588550.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           tusciae DSM 2912]
 gi|295410914|gb|ADG05406.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           tusciae DSM 2912]
          Length = 196

 Score = 38.8 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 57/188 (30%), Gaps = 32/188 (17%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           I  +  + + +   + DD    + + ++SPGGS  AG AI+  +Q +K     +      
Sbjct: 39  IVANLVVAQLLFLAAEDDK-KDIRLYINSPGGSITAGMAIYDTMQYIKPDVSTVCIGMAA 97

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           +  A  L +       A   S +     L     V+     + +    +  +  K     
Sbjct: 98  SMGAFLLAAGTKGKRFALPNSEIMIHQPLG---GVRGQAADIKIHADWILRTKDKINRIL 154

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLID 225
                                      SE    P +K              EAK  GLID
Sbjct: 155 ---------------------------SERTGQPLEKIERDTDRDNFMDAEEAKAYGLID 187

Query: 226 VVGGQEEV 233
            V    ++
Sbjct: 188 EVISPVDL 195


>gi|323528156|ref|YP_004230308.1| hypothetical protein BC1001_3837 [Burkholderia sp. CCGE1001]
 gi|323385158|gb|ADX57248.1| protein of unknown function DUF107 [Burkholderia sp. CCGE1001]
          Length = 575

 Score = 38.8 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSP 76
            +        +        V  I + G I    +  ++  ++R + D  A   ++ L +P
Sbjct: 72  AVQAATLPAPAAGGQAPNSVVVIPVSGAIGPASADFIVRSLQRAA-DSHAQLAVLQLDTP 130

Query: 77  GGSAYAGEAIFRAIQK 92
           GG   +   I +AI  
Sbjct: 131 GGLDTSMRQIIKAILA 146


>gi|147677139|ref|YP_001211354.1| protease subunit of ATP-dependent Clp proteases [Pelotomaculum
           thermopropionicum SI]
 gi|259585961|sp|A5D447|CLPP_PELTS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|146273236|dbj|BAF58985.1| protease subunit of ATP-dependent Clp proteases [Pelotomaculum
           thermopropionicum SI]
          Length = 194

 Score = 38.8 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 59/190 (31%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D+    +I ++  +  +D    +   ++SPGG   AG AI+  +Q V++  
Sbjct: 29  IIFLGGPIDDNTANLIIAQMLFLEAEDPEKDIQFYINSPGGVVTAGMAIYDTMQYVRSPV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++  L + A     +   + +     L                      
Sbjct: 89  ATICIGQAASMASLLLAAGAKGKRYSLPYARILIHQPLG--------------------- 127

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                                      S H    +   +R+   D           +  E
Sbjct: 128 GVQGQATDIEIHAKEILRMRQFLNEILSRHTGQPIEKIARDTERD--------YFMSAQE 179

Query: 218 AKKVGLIDVV 227
           AK+ G+ID V
Sbjct: 180 AKEYGIIDEV 189


>gi|330722307|gb|EGH00174.1| ATP-dependent Clp protease proteolytic subunit [gamma
           proteobacterium IMCC2047]
          Length = 210

 Score = 38.8 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 57/166 (34%), Gaps = 7/166 (4%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 42  VIFLVGPVEDHMANLVVAQMLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A+        S V     L  +      ++     I +++ 
Sbjct: 102 STLCIGQAASMGALLLAGGAAGKRFCLPHSRVMIHQPLGGFQGQATDIEIHTKEILTIRD 161

Query: 158 S-----PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                                      D   +  +  +  V E+R+
Sbjct: 162 KLNRVLSKHTGQDLDKIATDTDRDNFMDGHAAVEYGLIDQVMENRH 207


>gi|28211967|ref|NP_782911.1| ATP-dependent Clp protease proteolytic subunit [Clostridium tetani
           E88]
 gi|28204410|gb|AAO36848.1| ATP-dependent clp protease proteolytic subunit [Clostridium tetani
           E88]
          Length = 202

 Score = 38.8 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 31/177 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGGS  +G AI+  +Q +K     I      +  A  
Sbjct: 52  IVAQLLFLEAEDPDKDIFLYINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFL 111

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     A   S +     L  +                                  
Sbjct: 112 LAAGAKGKRFALPNSEIMIHQPLGGFQGQ------------------------------A 141

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVG 228
             + +  D +         ++SE    P +               +AK  GLID V 
Sbjct: 142 TDIGIHADRILKIKQNLNSILSEKTGQPLEVIQRDTERDNFMDANQAKDYGLIDEVM 198


>gi|77463765|ref|YP_353269.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
           sphaeroides 2.4.1]
 gi|126462595|ref|YP_001043709.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221639635|ref|YP_002525897.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
           sphaeroides KD131]
 gi|332558621|ref|ZP_08412943.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
           sphaeroides WS8N]
 gi|124013827|sp|Q3J1G6|CLPP_RHOS4 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214702|sp|A3PKS1|CLPP_RHOS1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763798|sp|B9KJU9|CLPP_RHOSK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|77388183|gb|ABA79368.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodobacter
           sphaeroides 2.4.1]
 gi|126104259|gb|ABN76937.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221160416|gb|ACM01396.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
           sphaeroides KD131]
 gi|332276333|gb|EGJ21648.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
           sphaeroides WS8N]
          Length = 210

 Score = 38.8 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/191 (10%), Positives = 55/191 (28%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     +  ++  +  ++ +  + + ++SPGG   +G +I+  +Q ++ + 
Sbjct: 38  IIFLSGPVHDGMSSLICAQLLFLEAENPSKEIAMYINSPGGVVTSGLSIYDTMQYIRPKV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +    +  +   S V        Y                   
Sbjct: 98  STLVIGQAASMGSLLLTAGEKGMRFSLPNSRVMVHQPSGGYQGQ---------------- 141

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            + +     +        +         +     L      +  
Sbjct: 142 --------------ATDIMIHARETEKLKRRLNEIYVRHTGQDLETVEAALERDNFMSAE 187

Query: 217 EAKKVGLIDVV 227
           +AK  GLID +
Sbjct: 188 DAKAWGLIDEI 198


>gi|330814219|ref|YP_004358458.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327487314|gb|AEA81719.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 204

 Score = 38.8 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I       +  ++  +  ++++  + + ++SPGG    G AI+  +Q +K   
Sbjct: 38  IIFLVGPINSQVSSLISAQLLFLESENNSKEIFMYINSPGGIVTDGLAIYDTMQYIKPAV 97

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L +      ++   S    + V       +     + +    +  
Sbjct: 98  ATLCIGQACSMGSFLLAAGEKGQRMSLPNS---RVMVHQPSAGFQGQATDIEIHANEIMQ 154

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
           +  K                              + S+      +K    L   +  +  
Sbjct: 155 TKKK---------------------------LNEIYSKHTGQSVEKIKEALERDKFMSAE 187

Query: 217 EAKKVGLIDVV 227
           EAK  GLID V
Sbjct: 188 EAKAFGLIDKV 198


>gi|315122830|ref|YP_004063319.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496232|gb|ADR52831.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 216

 Score = 38.8 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 65/190 (34%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I GQIED  +  +  ++  +  ++    + + ++SPGG   AG AI+  +Q +   K
Sbjct: 44  IVFITGQIEDHMAALICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---K 100

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
           P ++ +    A++   +  A+              G+ F  P  +  L            
Sbjct: 101 PPVSTLCIGQAASMGSLLLAAGK-----------KGMRFALPNARIML------------ 137

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
              +       + +         +        + +    R +  +    L      +  +
Sbjct: 138 --HQPSGGFSGQASDIERHARDIIKIKHRLNNIYVKHCGR-VYEEVEQTLDRDCFMSAED 194

Query: 218 AKKVGLIDVV 227
           A   GLID V
Sbjct: 195 AHAWGLIDKV 204


>gi|307706962|ref|ZP_07643761.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           mitis SK321]
 gi|307617676|gb|EFN96844.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           mitis SK321]
          Length = 196

 Score = 38.8 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 59/192 (30%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   DS   + + +++PGGS  AG AI   +  +K   
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +  
Sbjct: 87  QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      + +   ++++E+     +K    ++   W +  
Sbjct: 145 --------------------------KTRNILEKILAENSGQSIEKVHADAERDNWMSAQ 178

Query: 217 EAKKVGLIDVVG 228
           E  + G ID + 
Sbjct: 179 ETLEYGFIDEIM 190


>gi|255019392|ref|ZP_05291501.1| ATP-dependent Clp protease proteolytic subunit [Acidithiobacillus
           caldus ATCC 51756]
 gi|254971164|gb|EET28617.1| ATP-dependent Clp protease proteolytic subunit [Acidithiobacillus
           caldus ATCC 51756]
          Length = 214

 Score = 38.4 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 67/200 (33%), Gaps = 35/200 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q ++   
Sbjct: 44  VIFLVGPVEDLMANLVVAQLLFLEAENPDKDIALYINSPGGSVTAGLAIYDTMQFIRPAV 103

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A+    A   + +        Y  V   ++     I  +  
Sbjct: 104 STVCIGQAASMGAVLLAAGAAGKRYALPNARIMLHQPSGGYQGVAHDIEIHAKEILRI-- 161

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                             Q + +++        + + +           L      +  E
Sbjct: 162 -----------------RQRLNEILVEHTGQSQQRIEQ----------DLDRDFFMSAQE 194

Query: 218 AKKVGLIDVV----GGQEEV 233
           AK   L+D V    G  E+ 
Sbjct: 195 AKDYHLVDSVITHRGDNEDA 214


>gi|295696926|ref|YP_003590164.1| Enoyl-CoA hydratase/isomerase [Bacillus tusciae DSM 2912]
 gi|295412528|gb|ADG07020.1| Enoyl-CoA hydratase/isomerase [Bacillus tusciae DSM 2912]
          Length = 254

 Score = 38.4 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 55/188 (29%), Gaps = 26/188 (13%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           ++ L E I    +D +   ++++ +                +   +   V   + +    
Sbjct: 31  AEALAEAIRECRQDPAVRGIVITGAGD--------------RAFISGGDVKQYLGKGGGR 76

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A      +    V  +        V      V+    ++  +                  
Sbjct: 77  AAIYAVMSRMRYVLEQIYFCPKPVVAAARGAVRGGGAEVLAA------------CHWRLG 124

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
               +V  +Q  +     W    +   R        VL DG ++ G EA + GL+D +  
Sbjct: 125 TPDVSVGFVQVTLGIVPGWGGGSILVRRLGEARALPVLLDGEVYNGEEAVERGLLDELVP 184

Query: 230 QEEVWQSL 237
            +E+ +  
Sbjct: 185 GDELLERA 192


>gi|223940354|ref|ZP_03632209.1| protein of unknown function DUF107 [bacterium Ellin514]
 gi|223890959|gb|EEF57465.1| protein of unknown function DUF107 [bacterium Ellin514]
          Length = 423

 Score = 38.4 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 69/214 (32%), Gaps = 33/214 (15%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSS 75
           + + +V   +       +  VA I I G I    +  +   I+   + + A  L++ L +
Sbjct: 5   LAIAIVILMYGGLACLRAADVALIKIHGAIGPATADYIARAIDVAGKSNDA-CLVIQLDT 63

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           PGG   + + I +                 +        S A+    +A   +  +  V 
Sbjct: 64  PGGLLDSTKEIVQK-----------FYASTVPTVVYVAPSGANA--GSAGCFITLAADVA 110

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
              P                      A P   S    K   +M+  +++     +  ++E
Sbjct: 111 AMAPNTSI----------------GAAHPVTLSPGGEKTDDVMKQKLENFASSSIEAIAE 154

Query: 196 SRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVG 228
            R    +     + +    T  +A K+ +ID++ 
Sbjct: 155 KRGRNVEWAKSSVRESASTTAEKALKLKVIDLIA 188


>gi|119510658|ref|ZP_01629787.1| Peptidase S14, ClpP [Nodularia spumigena CCY9414]
 gi|119464709|gb|EAW45617.1| Peptidase S14, ClpP [Nodularia spumigena CCY9414]
          Length = 210

 Score = 38.4 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 67/191 (35%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  ++ ++  +  +DS   + + ++SPGGS YAG AI+  +Q+++   
Sbjct: 33  IIFLGTPIDDTVANSIVAQLLFLDAEDSEKDIQIYINSPGGSVYAGMAIYDTMQQIRPDV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + ++   ++   S +     L      +     + +  + +  
Sbjct: 93  VTICFGLAASMGAFLLAAGSAGKRMSLPDSRIMIHQPLG---GAQGQAIDIEIQAREILY 149

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
              K                                      P ++    ++   + +  
Sbjct: 150 VKAKLNQLLGH---------------------------HTGQPLERLEADTERDFFMSAE 182

Query: 217 EAKKVGLIDVV 227
           EAK  GLID V
Sbjct: 183 EAKNYGLIDQV 193


>gi|311030263|ref|ZP_07708353.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus sp.
           m3-13]
          Length = 193

 Score = 38.4 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I  +I D  +  ++ ++  ++ DD    + + ++SPGGS  AG AI   +  +K   
Sbjct: 29  IIMIGEEINDQIANSVVAQLLFLAADDPEKDISIYINSPGGSTTAGFAILDTMHYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L++      +A   S +     L         ++           
Sbjct: 89  RTICIGMAASFGAMLLMAGTKGKRLALPNSEIMIHQPLGGARGQATEIEISARR------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +        +++++    P +K           T  
Sbjct: 143 ------------------------ILKLKGDLHKMIADYTGQPIEKIERDTDRDNFMTAG 178

Query: 217 EAKKVGLIDVV 227
           EAK+ G+ID V
Sbjct: 179 EAKEYGIIDEV 189


>gi|254555672|ref|YP_003062089.1| Clp protease domain protein [Lactobacillus plantarum JDM1]
 gi|254044599|gb|ACT61392.1| Clp protease domain protein [Lactobacillus plantarum JDM1]
          Length = 247

 Score = 38.4 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 81/261 (31%), Gaps = 48/261 (18%)

Query: 41  IAIRGQIEDSQE--LIERIER---ISRD------DSATALIVSLSSPGGSAYAGEAIFRA 89
           I ++G I  + +  + + +E      +D      D  + + V ++S GG   AG  I+ A
Sbjct: 4   INVKGPIISNDDKWIYDMLEMDSTAPKDVIDALPDDGSTVEVDINSGGGLMDAGTEIYTA 63

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           +   +                          ++     +  S   L         +  +G
Sbjct: 64  LMAYQ------------------------GKVMVNIVGMAASSASLIAMAGNPTRISPVG 99

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209
             +    +  ++ +    ++++    Q                      +  +      D
Sbjct: 100 QIMIHNVAGGLRGDYRDQAKLSEILKQS--------SEAIANAYHLKTGLSMEDLQAKMD 151

Query: 210 GRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS--IRKIKDWNPPKNYWFCDLKNL 266
              +    +AK++G +D +   +++   L A G      I KI +     N      +++
Sbjct: 152 SETYLNADQAKELGFVDEIMFDDQI--ELVADGGLPKPAIDKITELMKQNNSGMTTARSI 209

Query: 267 SISSLLEDTIPLMKQTKVQGL 287
           +   L +  I  +     Q L
Sbjct: 210 NPFKLSDSDIDRITTAVTQKL 230


>gi|118431752|ref|NP_148417.2| serine protease [Aeropyrum pernix K1]
 gi|116063074|dbj|BAA81162.2| serine protease [Aeropyrum pernix K1]
          Length = 503

 Score = 38.4 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 86/268 (32%), Gaps = 37/268 (13%)

Query: 27  WSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
            +S+     P    I I G I+++    L + IER   +++   LIV L++PGG   A  
Sbjct: 78  ATSYERVVGPKALIIRIEGTIDNAMMDYLKQSIERAEEENAV--LIVELNTPGGFVDAAT 135

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            +  +I K +                           V  + +      +L         
Sbjct: 136 EMVVSISKAR---------------------IPVVGYVVEKWAESAGTMILMSTHIAAMQ 174

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
              +  S++ +   P      P  +           +++          +     P    
Sbjct: 175 PGTIIGSVQPIAYDPTTGSYQPVLD---------SKIINPIVKTLCEHGATRGRNPEALV 225

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
             +     +   EA + G+ID++   + E+ Q +    V   I +    +   +Y     
Sbjct: 226 RFVLYNDNYGAEEALEKGVIDLIARDRSELLQLIDGKVVRLPIGETVLIDVNGSY-EVLE 284

Query: 264 KNLSISSLLEDTIPLMKQTKVQ-GLWAV 290
            +L I  L   + P++    +  G  A+
Sbjct: 285 PDLRIRVLHSLSDPMLSGILLSIGALAL 312


>gi|309800003|ref|ZP_07694203.1| Clp protease [Streptococcus infantis SK1302]
 gi|308116402|gb|EFO53878.1| Clp protease [Streptococcus infantis SK1302]
          Length = 196

 Score = 38.4 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 2/155 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   DS   + + +++PGGS  AG AI   +  +K   
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +K+
Sbjct: 87  QTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                +    +              D        L
Sbjct: 147 RKTLEQILADNSGKSVEQIHADAERDYWMSAQETL 181


>gi|116734381|gb|ABK20179.1| putative SohB/S49 peptidase [Allochromatium vinosum DSM 180]
          Length = 57

 Score = 38.4 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 17/49 (34%)

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
                  ++ G  W G  A ++GL D +   ++      A      ++ 
Sbjct: 5   TRLDLERVATGEYWHGRRAVELGLADAIQTSDDFILEAGAEMELLKLKY 53


>gi|332638033|ref|ZP_08416896.1| ATP-dependent Clp protease proteolytic subunit [Weissella cibaria
           KACC 11862]
          Length = 197

 Score = 38.4 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IE   +  +I ++  +   D    + + ++SPGG   AG AI+  +  +    
Sbjct: 29  IIMVSGPIESQMATAIIAQLLFLDAQDPDKDIYMYINSPGGEVNAGMAIYDTMNFIHADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             I      + ++    S A         S         
Sbjct: 89  QTIVIGLAASMASVLASSGAKGKRFMLPNSQFMIHQPSG 127


>gi|302526626|ref|ZP_07278968.1| 2-ketocyclohexanecarboxyl-CoA hydrolase [Streptomyces sp. AA4]
 gi|302435521|gb|EFL07337.1| 2-ketocyclohexanecarboxyl-CoA hydrolase [Streptomyces sp. AA4]
          Length = 268

 Score = 38.4 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/175 (10%), Positives = 42/175 (24%), Gaps = 5/175 (2%)

Query: 72  SLSSPGGSAYA-GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
             +S  GS       ++  ++     +  I                A        T    
Sbjct: 25  RGNSLTGSMMPVIREMWAEVRDDPWIRAAIVIGAGEKHFCTGADVHAVAGRGGMSTGNGP 84

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV--NPKAVQMMQDVVDSSYHW 188
               +F  P        +  ++  + +            V     A  M   V       
Sbjct: 85  LTDEVFWSPRQNRVWKPVISAVNGLVAGAGLHFVVDADIVLAADHAAFMDTHVNVGLVGA 144

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIW--TGAEAKKVGLIDVVGGQEEVWQSLYALG 241
              +    R        +   G+ +      A ++GL+D +   +++      + 
Sbjct: 145 MENIGLAKRLPLGSALRMTLMGKSYRMPAQRAYQLGLVDELSTSDDLMADAEEMA 199


>gi|71276511|ref|ZP_00652786.1| Peptidase S14, ClpP [Xylella fastidiosa Dixon]
 gi|71900578|ref|ZP_00682705.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1]
 gi|170729732|ref|YP_001775165.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
           M12]
 gi|226706561|sp|B0U5N1|CLPP_XYLFM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|71162688|gb|EAO12415.1| Peptidase S14, ClpP [Xylella fastidiosa Dixon]
 gi|71729635|gb|EAO31739.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1]
 gi|167964525|gb|ACA11535.1| Endopeptidase Clp [Xylella fastidiosa M12]
          Length = 208

 Score = 38.4 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D     ++ ++  +  ++    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 36  LIFLVGPIDDYMANLIVAQLLFLEAENPEKDINIYINSPGGVVTAGMAIYDTMQYIKPAV 95

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S AS    A   S V     L  +                   
Sbjct: 96  STICVGQAASMGALLLASGASGKRYALPNSRVMIHQPLGGFQGQ---------------- 139

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                            V +    + +       ++++      +            +  
Sbjct: 140 --------------ATDVDIHAREILALRARLNEILAKHTGQSLETIAHDTERDNFKSAV 185

Query: 217 EAKKVGLIDVVGGQEE 232
           +A+  GL+D V GQ +
Sbjct: 186 DAQAYGLVDQVFGQRQ 201


>gi|322374649|ref|ZP_08049163.1| Clp protease [Streptococcus sp. C300]
 gi|321280149|gb|EFX57188.1| Clp protease [Streptococcus sp. C300]
          Length = 196

 Score = 38.4 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 59/192 (30%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   DS   + + +++PGGS  AG AI   +  +K   
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +K+
Sbjct: 87  QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                            ++++++     ++    ++   W +  
Sbjct: 147 RK----------------------------TLEKILADNSGKSVEQIHADAERDYWMSAQ 178

Query: 217 EAKKVGLIDVVG 228
           E  + G ID + 
Sbjct: 179 ETLEYGFIDEIM 190


>gi|195033485|ref|XP_001988693.1| GH11302 [Drosophila grimshawi]
 gi|193904693|gb|EDW03560.1| GH11302 [Drosophila grimshawi]
          Length = 281

 Score = 38.4 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSLYA-LGVDQSIRKIKDWNPPK 256
              +    L+ GR++T  EA +VGL+D +    EE        +     +  +      +
Sbjct: 175 PRREAERSLNQGRMFTTEEALRVGLVDEIASSKEEALAKCADFIATFAKVNPLARSLTKQ 234

Query: 257 NYWFCDLKNL 266
            +   DL+ L
Sbjct: 235 QFRSADLQQL 244


>gi|196019570|ref|XP_002119003.1| hypothetical protein TRIADDRAFT_62972 [Trichoplax adhaerens]
 gi|190577377|gb|EDV18511.1| hypothetical protein TRIADDRAFT_62972 [Trichoplax adhaerens]
          Length = 203

 Score = 38.4 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 63/134 (47%), Gaps = 10/134 (7%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYA 82
              E+ S     +   G I+  +      E+   +   +  D+   +++ L SPGG+   
Sbjct: 71  KKEENKSSKTYLLKFNGDIQAKEVDSLKKEITAILSVANNGDN---VVLMLESPGGTVNG 127

Query: 83  GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
                  ++++  R   +   V  +AAS GY+++  ++ I+AA  ++VGSIGVL + P  
Sbjct: 128 YGLATSELERLTARGLHLTVLVDRVAASGGYMMAVVADRIIAAPFAIVGSIGVLTEIPNF 187

Query: 142 KPFLDKLGVSIKSV 155
              ++K G+  + +
Sbjct: 188 NELMEKNGIKYEQI 201


>gi|320106219|ref|YP_004181809.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Terriglobus
           saanensis SP1PR4]
 gi|319924740|gb|ADV81815.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Terriglobus
           saanensis SP1PR4]
          Length = 198

 Score = 38.4 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 30/190 (15%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            I   I +   +I ++  +S +D    + + ++SPGGS  AG AI+  +Q +KN    + 
Sbjct: 35  PIDDNIANV--IIAQLLFLSGEDPEKDIQLYINSPGGSITAGMAIYDTMQYIKNDVSTLC 92

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                +  A  L++       A   S +     L     +     ++ +  + +      
Sbjct: 93  IGQAASMGAFLLMAGKKGKRFALPNSRILIHQPLIMGGGISGQATEIDIHAREI------ 146

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKK 220
                                        ++ +E      ++         I   A+AK+
Sbjct: 147 ---------------------LRIRELMNKIQAEHTGQTLEQIERDTDRDFIMNSAQAKE 185

Query: 221 VGLIDVVGGQ 230
            GLID +  +
Sbjct: 186 YGLIDDIITR 195


>gi|71901066|ref|ZP_00683176.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1]
 gi|71729193|gb|EAO31314.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1]
          Length = 208

 Score = 38.4 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 33/196 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D     ++ ++  +  ++    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 36  LIFLVGPIDDYMANLVVAQLLFLEAENPEKDINIYINSPGGVVTAGMAIYDTMQYIKPAV 95

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S AS    A   S V     L  +      +D           
Sbjct: 96  STICVGQAASMGALLLASGASGKRYALPNSRVMIHQPLGGFQGQATDIDIHARE------ 149

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   + +       ++++      +            +  
Sbjct: 150 ------------------------ILALRARLNEILAKHTGQSLETIAHDTERDNFKSAV 185

Query: 217 EAKKVGLIDVVGGQEE 232
           +A+  GL+D V GQ +
Sbjct: 186 DAQAYGLVDQVFGQRQ 201


>gi|296394282|ref|YP_003659166.1| endopeptidase Clp [Segniliparus rotundus DSM 44985]
 gi|296181429|gb|ADG98335.1| Endopeptidase Clp [Segniliparus rotundus DSM 44985]
          Length = 210

 Score = 38.4 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 58/181 (32%), Gaps = 28/181 (15%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D    + + ++SPGGS  +  AI+  +Q V      +      +
Sbjct: 47  TSANDIMAQLLVLESLDPDRDITIYINSPGGSFTSLMAIYDTMQFVHCDIATVCLGQAAS 106

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L +       A   + V       +   ++     L +    +            
Sbjct: 107 AAAVLLAAGTPGKRAALPNARVLIHQPRIEGGAIRGQATDLEIQAAEI------------ 154

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDV 226
                          +         +S       D+    +D  +I T  EAK  G+ID 
Sbjct: 155 ---------------ERMRRLMEETLSRHTGKTADEVRKDTDRDKILTAQEAKDYGIIDS 199

Query: 227 V 227
           V
Sbjct: 200 V 200


>gi|269837468|ref|YP_003319696.1| hypothetical protein Sthe_1439 [Sphaerobacter thermophilus DSM
           20745]
 gi|269786731|gb|ACZ38874.1| protein of unknown function DUF114 [Sphaerobacter thermophilus DSM
           20745]
          Length = 288

 Score = 38.4 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 63/177 (35%), Gaps = 5/177 (2%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS++++  I     D     ++    +PGG   A E I  A+++   +  V   V   
Sbjct: 68  IEDSEQVLRAIRLTPEDMPVDVVL---HTPGGLVLAAEQIAEALRRH--KGRVTVFVPHY 122

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           A S G LI+  ++ IV    +++G +      P    +     +      +     +   
Sbjct: 123 AMSGGTLIALGADEIVMDPDAVLGPVDPQLGSPQGGSYPAASILKALEEPNPNRDDQTLI 182

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
             ++  KA++ +     +     +      R          +        +A+ +GL
Sbjct: 183 LGDMARKALEQVYATTYNLLVKHLPPEEADRAARALSGGQWTHDYPIDVEQARGLGL 239


>gi|269123536|ref|YP_003306113.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Streptobacillus moniliformis DSM 12112]
 gi|268314862|gb|ACZ01236.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Streptobacillus moniliformis DSM 12112]
          Length = 192

 Score = 38.4 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 58/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I    +  +I ++  ++  D    + + ++SPGG   AG  I+  +  +    
Sbjct: 29  IIFLSGEINTEMANAIIAQLLFLNAQDKEKDITMYINSPGGMVTAGFGIYDTMNHISCDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L S       A   S V     L      +     + +  +++  
Sbjct: 89  VTVCIGMAASMGAFLLSSGTKGKRFALPNSEVMIHQPLG---GARGQATDIQIVAENILK 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216
           +  K                                S++    ++K           +  
Sbjct: 146 TKHKLAEIL---------------------------SKNTGQSFEKIISDTERDNYLSAE 178

Query: 217 EAKKVGLIDVV 227
           EA   GL+D V
Sbjct: 179 EAVAYGLVDKV 189


>gi|325687744|gb|EGD29765.1| peptidase s14, clpp [Streptococcus sanguinis SK72]
          Length = 232

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/196 (10%), Positives = 58/196 (29%), Gaps = 37/196 (18%)

Query: 40  RIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95
            + + G I        ++  +I +         L + ++SPGG  +A   I+  +   K+
Sbjct: 20  VLHLNGTIASESWVDDDVTPQIFKNELMSGTGPLTLWINSPGGDVFAAAQIYNMLMDYKD 79

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
              V  +    +A++   ++  +  +      ++                     +  +V
Sbjct: 80  DVTVNIDGIAASAASVIAMAGTTVNMSPVAMMMIH--------------------NPMTV 119

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-T 214
                K      + ++                  +       ++   +   L D   W  
Sbjct: 120 AIGDSKEMEKAIAMLSE------------VKESILNAYEIKTSLSRVQLSHLMDAESWFN 167

Query: 215 GAEAKKVGLIDVVGGQ 230
             +A ++G  D +  +
Sbjct: 168 AKKALELGFADSILYE 183


>gi|148655690|ref|YP_001275895.1| endopeptidase Clp [Roseiflexus sp. RS-1]
 gi|148567800|gb|ABQ89945.1| Endopeptidase Clp [Roseiflexus sp. RS-1]
          Length = 203

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 62/199 (31%), Gaps = 33/199 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  ++ ++  +   D    +   ++SPGGS   G AI+  ++ +    
Sbjct: 31  IIMLGTPIDDEVASLIVAQLLYLQHTDPDRDIWFYINSPGGSVRDGLAIYDTMKLISPDV 90

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      + +   L   A     A   + +             P ++++   +  ++ 
Sbjct: 91  CTVCVGRAGSMATILLAGGARGKRYALPHATIHFHPAGGGAEGYAPDMERIVKELLRIQ- 149

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                             L++       ++     S  R  T  
Sbjct: 150 -----------------------------ELGNSLLARDTGKTVEEITRDFSRDRFMTAE 180

Query: 217 EAKKVGLIDVVGGQEEVWQ 235
           EA++ G ID +   ++V  
Sbjct: 181 EAREYGFIDAILESKKVAA 199


>gi|52145328|gb|AAU29368.1| putative capsid protein [Wolbachia phage WO]
          Length = 118

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  FV+L++ +R +  +K      G  + G +A ++GL D V    E   +  +  V  +
Sbjct: 13  YEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAIEIGLADGVTTFFEFINNHKSRSVSMT 71

Query: 246 IRKIKDWNPPK 256
             ++ +     
Sbjct: 72  TNELTEEGYEN 82


>gi|15674537|ref|NP_268711.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes M1 GAS]
 gi|19745547|ref|NP_606683.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS8232]
 gi|21909823|ref|NP_664091.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS315]
 gi|28896484|ref|NP_802834.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes SSI-1]
 gi|50913700|ref|YP_059672.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS10394]
 gi|71910142|ref|YP_281692.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS5005]
 gi|94987959|ref|YP_596060.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS9429]
 gi|94989833|ref|YP_597933.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS10270]
 gi|94991844|ref|YP_599943.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS2096]
 gi|94993720|ref|YP_601818.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS10750]
 gi|139474337|ref|YP_001129053.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes str. Manfredo]
 gi|209558883|ref|YP_002285355.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes NZ131]
 gi|251781853|ref|YP_002996155.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|306827931|ref|ZP_07461198.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes ATCC 10782]
 gi|56748646|sp|Q5XDM4|CLPP_STRP6 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56749808|sp|P69884|CLPP_STRP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56749809|sp|P69885|CLPP_STRP3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56749810|sp|P69886|CLPP_STRP8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116243170|sp|Q1JDA9|CLPP_STRPB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116243171|sp|Q1JN83|CLPP_STRPC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116243172|sp|Q1JID4|CLPP_STRPD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116243173|sp|Q1J887|CLPP_STRPF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214714|sp|A2RG72|CLPP_STRPG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706550|sp|B5XJZ8|CLPP_STRPZ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|13621642|gb|AAK33432.1| putative ATP-dependent protease proteolytic subunit [Streptococcus
           pyogenes M1 GAS]
 gi|19747668|gb|AAL97182.1| putative ATP-dependent protease proteolytic subunit [Streptococcus
           pyogenes MGAS8232]
 gi|21904009|gb|AAM78894.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus pyogenes MGAS315]
 gi|28811738|dbj|BAC64667.1| putative ATP-dependent protease proteolytic subunit [Streptococcus
           pyogenes SSI-1]
 gi|50902774|gb|AAT86489.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS10394]
 gi|71852924|gb|AAZ50947.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS5005]
 gi|94541467|gb|ABF31516.1| ATP-dependent endopeptidase clp proteolytic subunit [Streptococcus
           pyogenes MGAS9429]
 gi|94543341|gb|ABF33389.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Streptococcus pyogenes MGAS10270]
 gi|94545352|gb|ABF35399.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Streptococcus pyogenes MGAS2096]
 gi|94547228|gb|ABF37274.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Streptococcus pyogenes MGAS10750]
 gi|134272584|emb|CAM30851.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus pyogenes str. Manfredo]
 gi|209540084|gb|ACI60660.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes NZ131]
 gi|242390482|dbj|BAH80941.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|304429850|gb|EFM32892.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes ATCC 10782]
 gi|322411198|gb|EFY02106.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
 gi|323126667|gb|ADX23964.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 196

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 58/197 (29%), Gaps = 31/197 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K   
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S           +       +          D    +   +  
Sbjct: 87  QTIVMGMAASMGTVIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      + H   ++++++      +    ++   W +  
Sbjct: 145 --------------------------KTRHRLEKILAQNAGKTIKQIHKDAERDYWMSAE 178

Query: 217 EAKKVGLIDVVGGQEEV 233
           E    G ID +    E+
Sbjct: 179 ETLAYGFIDEIMENNEL 195


>gi|325479715|gb|EGC82805.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 197

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D  S  +I ++  +  +D    +   ++SPGG   +G AI+  +  +K   
Sbjct: 33  IIFLSGEVRDEISDIIIAQLLFLESEDPDKDIQFYINSPGGVVTSGLAIYDTMNYIKPDV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L S A     +  +S +                            
Sbjct: 93  STICIGQAASMAAVLLSSGAKGKRFSLPSSNIMIHQPSGGAQGQ---------------- 136

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGA 216
                            + +  + +        +++S++      K    +D     + A
Sbjct: 137 --------------ASDIVIQAEQIIKIKERLNKILSDNTGQSLKKIEKDTDRDFAMSAA 182

Query: 217 EAKKVGLIDVV 227
           EA + GLID V
Sbjct: 183 EALEYGLIDKV 193


>gi|194017679|ref|ZP_03056289.1| YqeZ [Bacillus pumilus ATCC 7061]
 gi|194010579|gb|EDW20151.1| YqeZ [Bacillus pumilus ATCC 7061]
          Length = 414

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 3/107 (2%)

Query: 30  HVEDNSPHVARIAIRGQIE-DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
             +     V  I I   +E    + IER    ++ + A  +I+ +++PGG+  A   I  
Sbjct: 2   TAKSVDQKVHVIPIEDTVEKGLSQFIERSFEQAKSERAKHIILDINTPGGAVDAALEIAD 61

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
            I+   +  PV   V+  A SAG  ++  ++ I       +G+  ++
Sbjct: 62  TIRA--SDIPVTAFVNHRALSAGAFLALNADQIYMTPNGKMGAAAII 106


>gi|90577735|ref|ZP_01233546.1| hypothetical membrane protein [Vibrio angustum S14]
 gi|90440821|gb|EAS66001.1| hypothetical membrane protein [Vibrio angustum S14]
          Length = 462

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 85/268 (31%), Gaps = 20/268 (7%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLS 74
            +   ++              V  I I+G I    S  +   I    ++ +A  +I+ + 
Sbjct: 4   FIQYLLLSLIIFCSPVLAQD-VWVINIKGGIGPATSDYVTREISEAQKN-NAAMIILQVD 61

Query: 75  SPGGSAYAGEAIFRAIQK--------VKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
           +PGG   +   I +AI          V                A ++ S A+   + A T
Sbjct: 62  TPGGLDSSMRQIIQAITVSPVPVATWVGPSGSRAASAGTYILLASHIASMANGTNLGAAT 121

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
            +    G   + P+     D+   S   VKSS    + S           M   V++ + 
Sbjct: 122 PVSIGGGNAGESPFNGDKSDEQSKSEDEVKSSEGSDQSSKQPVAIKSGSAMENKVMNDAA 181

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQS----LYALG 241
            +   L              +++    +   A +  +ID +     +V +     +  L 
Sbjct: 182 AYIESLAKLHNRNAEWAVKAVTESASISAETALQKNVIDFIAQDVAKVVEKSNGRMVKLN 241

Query: 242 VDQ---SIRKIKDWNPPKNYWFCDLKNL 266
             +    +  ++     +++ F  L  L
Sbjct: 242 GVETPIELSNVRFIEREQDWRFKLLSVL 269


>gi|46241461|gb|AAS82930.1| capsid protein [Wolbachia phage WO]
          Length = 136

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   +  ++++ +Q  VD  Y  F++ ++ +R +  +K      G  + G +A ++GL D
Sbjct: 1   PHEPMTSESLESLQKEVDRLYEMFLQXIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59

Query: 226 VV 227
            +
Sbjct: 60  GM 61


>gi|312984199|ref|ZP_07791545.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Lactobacillus crispatus CTV-05]
 gi|310894418|gb|EFQ43494.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Lactobacillus crispatus CTV-05]
          Length = 236

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 51/179 (28%), Gaps = 33/179 (18%)

Query: 55  ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114
            ++     + +   + + ++SPGG   AG  ++ A++K             + A      
Sbjct: 30  NQLNEALSNANGQDITLEINSPGGYIDAGSEMYTALKK---------YPGNVTAQVVGQA 80

Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
             A++ I  A   +  S         V   ++                            
Sbjct: 81  CSAASWIALAADKVEMSPTAQMMIHRVSGGVEGNVDDF---------------------- 118

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEE 232
                  +DS    +V L S+   +   +   +     W    +A   G  D +  + +
Sbjct: 119 -ASAMQSLDSMDQAYVDLYSKRTGLDKQEVYRMMCETTWMNAKQAVDKGFADSIMFEND 176


>gi|240102505|ref|YP_002958814.1| hypothetical protein TGAM_0448 [Thermococcus gammatolerans EJ3]
 gi|239910059|gb|ACS32950.1| Conserved hypothetical protein [Thermococcus gammatolerans EJ3]
          Length = 280

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           +EDS+E++  I    +D     +I    +PGG   A   I RA+++      VI   + M
Sbjct: 73  VEDSEEILRAIRAAPKDKPIDLII---HTPGGLVLAATQIARALKEHPAETRVIVPHYAM 129


>gi|88763681|gb|ABD49510.1| capsid protein [Wolbachia phage WO]
          Length = 118

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  FV+L++ +RN+          G  + G +A ++GL D V    E   +  +  V  +
Sbjct: 9   YEMFVQLIARNRNLSIQAIKSTEAGLYF-GEKAVEIGLADGVTTFFEFINNHKSRSVSMT 67

Query: 246 IRKIKDWNPPKNYWF 260
             ++ + N  +    
Sbjct: 68  TDELIEENYRREILE 82


>gi|306841674|ref|ZP_07474361.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /
           3-hydroxybutyryl-CoA epimerase [Brucella sp. BO2]
 gi|306288204|gb|EFM59588.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /
           3-hydroxybutyryl-CoA epimerase [Brucella sp. BO2]
          Length = 738

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%)

Query: 51  QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106
           QEL   I+ +  DD    ++++    +  G A     E +F+  QK K + P        
Sbjct: 36  QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                                   +   +     +             +      A  +P
Sbjct: 96  DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARVASDAP 143

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
             ++    V++             RL ++      D   +++ G   T   AK +GL+  
Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +   +++ ++   L     ++ ++ W+             +  + L      + + +  G
Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257


>gi|254700007|ref|ZP_05161835.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /
           3-hydroxybutyryl-CoA epimerase [Brucella suis bv. 5 str.
           513]
 gi|254705727|ref|ZP_05167555.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /
           3-hydroxybutyryl-CoA epimerase [Brucella pinnipedialis
           M163/99/10]
 gi|254710960|ref|ZP_05172771.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /
           3-hydroxybutyryl-CoA epimerase [Brucella pinnipedialis
           B2/94]
 gi|256015558|ref|YP_003105567.1| fatty oxidation complex, alpha subunit [Brucella microti CCM 4915]
 gi|256029342|ref|ZP_05442956.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /
           3-hydroxybutyryl-CoA epimerase [Brucella pinnipedialis
           M292/94/1]
 gi|256157534|ref|ZP_05455452.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /
           3-hydroxybutyryl-CoA epimerase [Brucella ceti M490/95/1]
 gi|256253491|ref|ZP_05459027.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /
           3-hydroxybutyryl-CoA epimerase [Brucella ceti B1/94]
 gi|261220618|ref|ZP_05934899.1| 3-hydroxyacyl-CoA dehydrogenase [Brucella ceti B1/94]
 gi|261313148|ref|ZP_05952345.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella pinnipedialis
           M163/99/10]
 gi|261318540|ref|ZP_05957737.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella pinnipedialis
           B2/94]
 gi|261750490|ref|ZP_05994199.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella suis bv. 5
           str. 513]
 gi|265986341|ref|ZP_06098898.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella pinnipedialis
           M292/94/1]
 gi|265996035|ref|ZP_06108592.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella ceti
           M490/95/1]
 gi|255998218|gb|ACU49905.1| fatty oxidation complex, alpha subunit [Brucella microti CCM 4915]
 gi|260919202|gb|EEX85855.1| 3-hydroxyacyl-CoA dehydrogenase [Brucella ceti B1/94]
 gi|261297763|gb|EEY01260.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella pinnipedialis
           B2/94]
 gi|261302174|gb|EEY05671.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella pinnipedialis
           M163/99/10]
 gi|261740243|gb|EEY28169.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella suis bv. 5
           str. 513]
 gi|262550332|gb|EEZ06493.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella ceti
           M490/95/1]
 gi|264658538|gb|EEZ28799.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella pinnipedialis
           M292/94/1]
          Length = 738

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%)

Query: 51  QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106
           QEL   I+ +  DD    ++++    +  G A     E +F+  QK K + P        
Sbjct: 36  QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                                   +   +     +             +      A  +P
Sbjct: 96  DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARVASDAP 143

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
             ++    V++             RL ++      D   +++ G   T   AK +GL+  
Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +   +++ ++   L     ++ ++ W+             +  + L      + + +  G
Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257


>gi|71902983|ref|YP_279786.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS6180]
 gi|110816467|sp|Q48V25|CLPP_STRPM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|71802078|gb|AAX71431.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS6180]
          Length = 196

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 58/197 (29%), Gaps = 31/197 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K   
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S           +       +          D    +   +  
Sbjct: 87  QTIVMGMAASMGTVIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      + H   ++++++      +    ++   W +  
Sbjct: 145 --------------------------KTRHRLEKILAQNAGKTIKQIHKDAERDYWMSAE 178

Query: 217 EAKKVGLIDVVGGQEEV 233
           E    G ID +    E+
Sbjct: 179 ETLTYGFIDEIMENNEL 195


>gi|299535801|ref|ZP_07049122.1| hypothetical protein BFZC1_07248 [Lysinibacillus fusiformis ZC1]
 gi|298729001|gb|EFI69555.1| hypothetical protein BFZC1_07248 [Lysinibacillus fusiformis ZC1]
          Length = 442

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISRDDSAT 67
           K R +   LV       ++       S  V  + I  ++E      +ER  + + +++A 
Sbjct: 3   KRRILSYLLVIWMTFLLAFPLTSAFASNKVYHVLIHNEVERGLHAFLERAFKEAEENNAE 62

Query: 68  ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           A+I+ + +PGG   A   I   +     +   I  +++ A SAG  ++  ++ I      
Sbjct: 63  AIILEIHTPGGFVNAANDIAMLMDAT--QIRTIAYINKDAHSAGAFLALHADEIYMVPNG 120

Query: 128 LVGSIGVL 135
            +G+  V+
Sbjct: 121 TIGAAAVI 128


>gi|163844919|ref|YP_001622574.1| hypothetical protein BSUIS_B0785 [Brucella suis ATCC 23445]
 gi|163675642|gb|ABY39752.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 738

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%)

Query: 51  QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106
           QEL   I+ +  DD    ++++    +  G A     E +F+  QK K + P        
Sbjct: 36  QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                                   +   +     +             +      A  +P
Sbjct: 96  DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARVASDAP 143

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
             ++    V++             RL ++      D   +++ G   T   AK +GL+  
Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +   +++ ++   L     ++ ++ W+             +  + L      + + +  G
Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257


>gi|161620852|ref|YP_001594738.1| Fatty acid oxidation complex alpha subunit [Brucella canis ATCC
           23365]
 gi|254703128|ref|ZP_05164956.1| Fatty acid oxidation complex alpha subunit [Brucella suis bv. 3
           str. 686]
 gi|260567942|ref|ZP_05838411.1| FadB protein [Brucella suis bv. 4 str. 40]
 gi|261753748|ref|ZP_05997457.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella suis bv. 3
           str. 686]
 gi|161337663|gb|ABX63967.1| Fatty acid oxidation complex alpha subunit [Brucella canis ATCC
           23365]
 gi|260154607|gb|EEW89688.1| FadB protein [Brucella suis bv. 4 str. 40]
 gi|261743501|gb|EEY31427.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella suis bv. 3
           str. 686]
          Length = 738

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%)

Query: 51  QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106
           QEL   I+ +  DD    ++++    +  G A     E +F+  QK K + P        
Sbjct: 36  QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                                   +   +     +             +      A  +P
Sbjct: 96  DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARVASDAP 143

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
             ++    V++             RL ++      D   +++ G   T   AK +GL+  
Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +   +++ ++   L     ++ ++ W+             +  + L      + + +  G
Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257


>gi|6723193|dbj|BAA89605.1| capsid protein [Bacteriophage WO]
 gi|6723205|dbj|BAA89611.1| capsid protein [Bacteriophage WO]
          Length = 113

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           Y  FV+L++ +R +  +K      G  + G +A ++GL D V    E   
Sbjct: 13  YEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFIN 61


>gi|225629265|ref|ZP_03787298.1| Fatty acid oxidation complex subunit alpha [Brucella ceti str.
           Cudo]
 gi|260167570|ref|ZP_05754381.1| fatty oxidation complex, alpha subunit [Brucella sp. F5/99]
 gi|261756990|ref|ZP_06000699.1| multifunctional fatty acid oxidation complex subunit alpha
           [Brucella sp. F5/99]
 gi|225615761|gb|EEH12810.1| Fatty acid oxidation complex subunit alpha [Brucella ceti str.
           Cudo]
 gi|261736974|gb|EEY24970.1| multifunctional fatty acid oxidation complex subunit alpha
           [Brucella sp. F5/99]
          Length = 738

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%)

Query: 51  QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106
           QEL   I+ +  DD    ++++    +  G A     E +F+  QK K + P        
Sbjct: 36  QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                                   +   +     +             +      A  +P
Sbjct: 96  DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARVASDAP 143

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
             ++    V++             RL ++      D   +++ G   T   AK +GL+  
Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +   +++ ++   L     ++ ++ W+             +  + L      + + +  G
Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257


>gi|149915902|ref|ZP_01904426.1| hypothetical protein RAZWK3B_07479 [Roseobacter sp. AzwK-3b]
 gi|149810225|gb|EDM70071.1| hypothetical protein RAZWK3B_07479 [Roseobacter sp. AzwK-3b]
          Length = 275

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 85/281 (30%), Gaps = 42/281 (14%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVAR-------------------- 40
           MEF L  I   + ++ ++   ++   ++   E     + R                    
Sbjct: 1   MEFSLSTIFFLFFIVMILQPVLMGRIFAFRREQAIRAIERKRRSRVITMIHRQERRSFFG 60

Query: 41  IAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
           + +   I  ED+Q +I  I+    +       + L +PGG   A   I RA++     K 
Sbjct: 61  VNVSRMIDLEDAQSIISAIKATPANTPID---LVLHTPGGLVLAAMQIARAVETHPA-KV 116

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            +       +    +   A  I++   + L      +           +    I+ V   
Sbjct: 117 TVFVPIYAMSGGTLIALAADEIVMGEFSMLGPIDPQIMGISAASIIAARDAKPIEHVSDV 176

Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-----W 213
            +         +       ++ +               R    +    L+ G        
Sbjct: 177 ALVLADVSDKAIAQVVRGAVEIMTPRME----------RGKAEELAKTLASGTWTHDYAL 226

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
           T AEA+++GL   VG   E+   L  L      +   ++ P
Sbjct: 227 TPAEARELGLEVTVGMPSEILD-LMKLFPAPVKQSAVEFLP 266


>gi|148558630|ref|YP_001257739.1| fatty oxidation complex subunit alpha [Brucella ovis ATCC 25840]
 gi|148369915|gb|ABQ62787.1| fatty oxidation complex, alpha subunit [Brucella ovis ATCC 25840]
          Length = 738

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%)

Query: 51  QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106
           QEL   I+ +  DD    ++++    +  G A     E +F+  QK K + P        
Sbjct: 36  QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                                   +   +     +             +      A  +P
Sbjct: 96  DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARVASDAP 143

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
             ++    V++             RL ++      D   +++ G   T   AK +GL+  
Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +   +++ ++   L     ++ ++ W+             +  + L      + + +  G
Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257


>gi|306846011|ref|ZP_07478578.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /
           3-hydroxybutyryl-CoA epimerase [Brucella sp. BO1]
 gi|306273646|gb|EFM55491.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /
           3-hydroxybutyryl-CoA epimerase [Brucella sp. BO1]
          Length = 738

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%)

Query: 51  QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106
           QEL   I+ +  DD    ++++    +  G A     E +F+  QK K + P        
Sbjct: 36  QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                                   +   +     +             +      A  +P
Sbjct: 96  DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARVASDAP 143

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
             ++    V++             RL ++      D   +++ G   T   AK +GL+  
Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +   +++ ++   L     ++ ++ W+             +  + L      + + +  G
Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257


>gi|23500527|ref|NP_699967.1| fatty oxidation complex subunit alpha [Brucella suis 1330]
 gi|23464160|gb|AAN33972.1| fatty oxidation complex, alpha subunit [Brucella suis 1330]
          Length = 738

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%)

Query: 51  QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106
           QEL   I+ +  DD    ++++    +  G A     E +F+  QK K + P        
Sbjct: 36  QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                                   +   +     +             +      A  +P
Sbjct: 96  DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARVASDAP 143

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
             ++    V++             RL ++      D   +++ G   T   AK +GL+  
Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +   +++ ++   L     ++ ++ W+             +  + L      + + +  G
Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257


>gi|6723219|dbj|BAA89618.1| capsid protein [Bacteriophage WO]
          Length = 118

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  F++L++ +R +  +K      G  + G +A ++GL D V    E   +  +  V  +
Sbjct: 13  YEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFINNHKSRSVSMT 71

Query: 246 IRKIKDWNPPK 256
             ++ D     
Sbjct: 72  TNELPDEGYEN 82


>gi|116511469|ref|YP_808685.1| ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis
           subsp. cremoris SK11]
 gi|123320556|sp|Q030V9|CLPP_LACLS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116107123|gb|ABJ72263.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lactococcus
           lactis subsp. cremoris SK11]
          Length = 199

 Score = 38.4 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 47/155 (30%), Gaps = 2/155 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 30  IIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S           +       +          D   V+ + +K+
Sbjct: 90  LTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGQGTQQTDMAIVAEQLLKT 149

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                +    +              D        L
Sbjct: 150 RKRLEQILADNSNRSLEQIHKDAERDHWMDAKETL 184


>gi|294853433|ref|ZP_06794105.1| enoyl-CoA hydratase [Brucella sp. NVSL 07-0026]
 gi|294819088|gb|EFG36088.1| enoyl-CoA hydratase [Brucella sp. NVSL 07-0026]
          Length = 738

 Score = 38.4 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%)

Query: 51  QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106
           QEL   I+ +  DD    ++++    +  G A     E +F+  QK K + P        
Sbjct: 36  QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                                   +   +     +             +      A  +P
Sbjct: 96  DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARVASDAP 143

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
             ++    V++             RL ++      D   +++ G   T   AK +GL+  
Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +   +++ ++   L     ++ ++ W+             +  + L      + + +  G
Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257


>gi|255573147|ref|XP_002527503.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223533143|gb|EEF34901.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 308

 Score = 38.4 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/195 (10%), Positives = 54/195 (27%), Gaps = 40/195 (20%)

Query: 53  LIERIERISRDDSATALIVSLSS---------PGGSAYAGEAIFRAIQKVKNRKPVITEV 103
           L+ +   +  DDS+  + + ++S           GS     AI  A+   K+    +   
Sbjct: 115 LVAQFMYLDYDDSSKPIYLYINSSGTQNEKMETVGSETEAYAIADAMFYCKSTVYTVNCG 174

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
                +   L   A         +                    +               
Sbjct: 175 MAYGQAGMLLSLGAKGYRALQPNASTKLYLPKVNRSSGAVIDMWIKAK------------ 222

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVG 222
                             +D++  +++ L+++      ++    +   + +   EA + G
Sbjct: 223 -----------------ELDANTEYYIDLLAKGTGKTKEEINKDIQRPKYFNSKEAIEYG 265

Query: 223 LIDVVGG-QEEVWQS 236
           L D +    ++ ++ 
Sbjct: 266 LADKIVDSSDDAFEK 280


>gi|158320276|ref|YP_001512783.1| hypothetical protein Clos_1241 [Alkaliphilus oremlandii OhILAs]
 gi|158140475|gb|ABW18787.1| protein of unknown function DUF107 [Alkaliphilus oremlandii
          OhILAs]
          Length = 430

 Score = 38.4 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEA 85
          ++  +  + +V  I IRG+I  +  L     +  +  D +ATA+I  + + GG   + E 
Sbjct: 20 AASGDQGAGNVYVIPIRGEITPAMHLYVKHNLSIVESDKNATAVIFEIDTYGGRIDSSEQ 79

Query: 86 IFRAIQKVK 94
          I + I    
Sbjct: 80 IGKLILNTN 88


>gi|33240370|ref|NP_875312.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|67460522|sp|Q7VC22|CLPP1_PROMA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|33237897|gb|AAP99964.1| Protease subunit of ATP-dependent Clp protease [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 196

 Score = 38.4 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 57/180 (31%), Gaps = 31/180 (17%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
            +  ++ ++  +  +D    + + ++SPGGS Y G  IF  IQ +K     +      + 
Sbjct: 38  SANRIVAQLLFLEAEDPEKDIFLYINSPGGSVYDGFGIFDTIQHIKPDVHTVCVGLAASM 97

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
            A  L + A     + + S +     L      +     + +    +     K       
Sbjct: 98  GAFLLCAGAKGKRSSLQHSRIMIHQPLG---GARGQATDIRIQADEILFLKQK------- 147

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                                   +S     P  K    +D   + + +EA   G+ID V
Sbjct: 148 --------------------LNTELSNRTGQPLSKIAEDTDRDFYMSPSEAISYGIIDNV 187


>gi|316936707|gb|ADU60348.1| capsid protein [Wolbachia phage WO]
          Length = 140

 Score = 38.4 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
               +  +++  +Q  VD  Y  FV+L++ +R +  +K      G  + G +A ++GL D
Sbjct: 2   HMEPMTSESLGSLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 60

Query: 226 VV 227
            V
Sbjct: 61  GV 62


>gi|150399941|ref|YP_001323708.1| hypothetical protein Mevan_1198 [Methanococcus vannielii SB]
 gi|150012644|gb|ABR55096.1| protein of unknown function DUF114 [Methanococcus vannielii SB]
          Length = 283

 Score = 38.4 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 4/109 (3%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+E++  I     D     ++    +PGG   A E I  A+++ K +  VI   + M
Sbjct: 67  IEDSEEILRAIRMTPGDMPIDLIL---HTPGGLVLASEQIATALKEHKAKTTVIIPHYAM 123

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
            +    +   A  II+     +      + QYP            +  +
Sbjct: 124 -SGGSLIALSADEIIMDKNAVMGPVDPQVGQYPAASIISAINTKYVDEL 171


>gi|224001754|ref|XP_002290549.1| 3,2-TRANS-ENOYL-COA isomerase [Thalassiosira pseudonana CCMP1335]
 gi|220973971|gb|EED92301.1| 3,2-TRANS-ENOYL-COA isomerase [Thalassiosira pseudonana CCMP1335]
          Length = 315

 Score = 38.4 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 80/236 (33%), Gaps = 19/236 (8%)

Query: 2   EFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS------QELIE 55
           ++ L +++T  V+ SL +       ++    +    VA + +     +S      + +  
Sbjct: 16  KYCLSRVQTPSVLASLFSTASAKDDFTHISVNEESGVAMLMLNRPPANSLSLEMNEAIST 75

Query: 56  RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
            I++I  +    ++I++ S+P  S ++       + +    +                 S
Sbjct: 76  SIKQIEANPKVQSVIIASSNP--SIFSAGLDIAELVEPDKDRLPKFWNSLQQVYLDLYGS 133

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175
             + I      +      +     Y           +        + +  P   +N   +
Sbjct: 134 RLATIAAIQGHAPAAGCMLAMACDYRIMCAGHGDDEVD----GKKRRKHVPTIGLNETQL 189

Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
                   ++  W  +L+  +      +   L+ G ++   +A KVGL+D VG ++
Sbjct: 190 ------GIAAPPWMGQLMVRTIGFRMAE-RALALGTLFQPTDALKVGLVDEVGNEQ 238


>gi|52425902|ref|YP_089039.1| ATP-dependent Clp protease proteolytic subunit [Mannheimia
           succiniciproducens MBEL55E]
 gi|60389529|sp|Q65RF6|CLPP_MANSM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|52307954|gb|AAU38454.1| ClpP protein [Mannheimia succiniciproducens MBEL55E]
          Length = 193

 Score = 38.4 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED+    ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  VIFLSGEVEDNMANLIVAQLLFLESENPEKDINLYINSPGGSVTAGMAIYDTMQFIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A+    A   + V     L  +                   
Sbjct: 89  RTLCVGQACSMGAFLLAGGAAGKRAALPHARVMIHQPLGGFRGQ---------------- 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            +Q+    +          ++     P++            +  
Sbjct: 133 --------------ASDIQIHAQEILKIKQTLNERLAFHTGQPFEVIERDTDRDNFMSAE 178

Query: 217 EAKKVGLIDVV 227
           +AK  GLID V
Sbjct: 179 DAKNYGLIDSV 189


>gi|46446077|ref|YP_007442.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|67460481|sp|Q6ME32|CLPP1_PARUW RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|46399718|emb|CAF23167.1| probable ATP-dependent Clp protease proteolytic subunit [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 206

 Score = 38.4 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 55/188 (29%), Gaps = 27/188 (14%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + E+I ++  +   D    ++  ++SPGG+  +G AI+  I+ + +    +      +
Sbjct: 44  GSASEIIRKLWYLELTDPGKPILFVINSPGGAVDSGFAIWDQIKMITSPVTTLVTGLAAS 103

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             +   +  +     A   S +     L          D    + +              
Sbjct: 104 MGSILSLCASPGRRFATPHSRIMIHQPLLSGVIKGQATDLEIQAKE-------------- 149

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
                        ++ +        V  +          +      T  EA + GL+D V
Sbjct: 150 -------------MLKTRNGLIEIYVQATGKNFAAIEKAIDRDTWMTAQEALEFGLLDKV 196

Query: 228 GGQEEVWQ 235
               E  +
Sbjct: 197 INSFEEIE 204


>gi|124025671|ref|YP_001014787.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. NATL1A]
 gi|123960739|gb|ABM75522.1| Clp protease subunit [Prochlorococcus marinus str. NATL1A]
          Length = 205

 Score = 38.4 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 60/180 (33%), Gaps = 31/180 (17%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
            +  ++ ++  +  DD    + + ++SPGGS Y G  IF  +Q VK     +      + 
Sbjct: 47  SANRIVAQLLFLEADDPDKDIFLYINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASM 106

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
            A  L + A     +   S +     L      +     + +    +     K       
Sbjct: 107 GAFLLCAGAKGKRSSLLHSRIMIHQPLG---GARGQASDIRIQADEILFIKDK------- 156

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                                 + +S+    P ++    +D   + + +EA + G+ID V
Sbjct: 157 --------------------LNKELSDRTGQPIERIREDTDRDFYMSPSEAIEYGIIDNV 196


>gi|88809170|ref|ZP_01124679.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 7805]
 gi|88787112|gb|EAR18270.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 7805]
          Length = 200

 Score = 38.4 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 60/179 (33%), Gaps = 30/179 (16%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  L+ ++  +  +DS   + + ++SPGGS  AG AI+  IQ VK+    I      +  
Sbjct: 44  ANSLVAQMLYLDSEDSGKPIYLYINSPGGSVTAGLAIYDTIQYVKSDVVTICVGLAASMG 103

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L +      +A   S +     L      +    ++                     
Sbjct: 104 AFLLAAGTKGKRLALPHSRIMIHQPLGGTAQRQASDIEIEAR------------------ 145

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                       +        R ++E     ++K    +D   + +  EA   GLID V
Sbjct: 146 -----------EILRMKEMLNRSMAEMSGQSFEKIEKDTDRDYFLSSQEAMDYGLIDRV 193


>gi|311350272|gb|ADP92336.1| capsid protein [Wolbachia phage WO]
          Length = 98

 Score = 38.4 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
              V+L++ +R +  +K      G  + G +A ++GL D V    E    
Sbjct: 1   EMLVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFINK 49


>gi|206602656|gb|EDZ39137.1| Peptidase S14, ClpP [Leptospirillum sp. Group II '5-way CG']
          Length = 203

 Score = 38.4 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 56/180 (31%), Gaps = 31/180 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +I ++  +  +D++  + + ++SPGG   AG AI+  +Q +K     I      +  A  
Sbjct: 43  VIAQLLFLEAEDASKDINLYINSPGGVVTAGLAIYDTMQYIKPDVSTICVGQAASMGAVL 102

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     A   + +     L         ++                          
Sbjct: 103 LAAGADGKRFALPNARIMIHQPLGGVQGQATEIEIHARE--------------------- 141

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQE 231
                    +         ++++       K    +D   + +  +AK  GL+D V    
Sbjct: 142 ---------ILKMREHLNGILAKHTKQSLAKVAQDTDRDYFLSAEDAKAYGLVDSVISSH 192


>gi|171780217|ref|ZP_02921121.1| hypothetical protein STRINF_02005 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281565|gb|EDT47000.1| hypothetical protein STRINF_02005 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 196

 Score = 38.4 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 58/192 (30%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G ++D  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 27  IIMLTGPVDDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S           +       +          D    +   +  
Sbjct: 87  QTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLL-- 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      +     ++++++     +K    ++   W +  
Sbjct: 145 --------------------------KTRQNLEQILADNSGQSLEKVHADAERDNWMSAQ 178

Query: 217 EAKKVGLIDVVG 228
           E  + G ID + 
Sbjct: 179 ETLEYGFIDEIM 190


>gi|120403081|ref|YP_952910.1| enoyl-CoA hydratase [Mycobacterium vanbaalenii PYR-1]
 gi|119955899|gb|ABM12904.1| Enoyl-CoA hydratase/isomerase [Mycobacterium vanbaalenii PYR-1]
          Length = 225

 Score = 38.4 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
            ++  GR     EA K+GL+D +   + V+ +  A     +    +     K+ +  D+
Sbjct: 160 DLVFSGRFVDAREALKLGLVDELVAPDTVYDAALAWAGRFADYPPEVLAAAKSSFARDM 218


>gi|312862980|ref|ZP_07723219.1| endopeptidase Clp [Streptococcus vestibularis F0396]
 gi|322517397|ref|ZP_08070271.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           vestibularis ATCC 49124]
 gi|311101475|gb|EFQ59679.1| endopeptidase Clp [Streptococcus vestibularis F0396]
 gi|322123995|gb|EFX95551.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           vestibularis ATCC 49124]
          Length = 196

 Score = 38.4 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 63/197 (31%), Gaps = 31/197 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 27  IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S           +       +          D    +   +K+
Sbjct: 87  QTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                        +   ++++++     +K  V ++   W +  
Sbjct: 147 ----------------------------RNNLEQILADNSGQSIEKVHVDAERDNWMSAQ 178

Query: 217 EAKKVGLIDVVGGQEEV 233
           E  + G ID +    ++
Sbjct: 179 ETLEYGFIDEIMTNNQL 195


>gi|305667504|ref|YP_003863791.1| hypothetical protein FB2170_14693 [Maribacter sp. HTCC2170]
 gi|88709552|gb|EAR01785.1| hypothetical protein FB2170_14693 [Maribacter sp. HTCC2170]
          Length = 257

 Score = 38.4 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 77/238 (32%), Gaps = 30/238 (12%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           +EL +  +    D     +I++      SA         I+ ++  +  I +      + 
Sbjct: 31  KELRQTFQEFKNDPEVKGVILTGQPHYFSAGL-----DLIELIQYNEHQINDFFGDFGTL 85

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
              ++     +++A T    + G +        ++         +  + +         +
Sbjct: 86  FQELAQFPKPLISAITGHSPAGGCVLAVTCDNRYMA--KGDQYVIGLNEVAVNIQISQNL 143

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                  M + + + Y                    + +G++ +G EA   GL+D +   
Sbjct: 144 TEAYAFWMGEGLANRY--------------------ILEGKLLSGKEAVSAGLVDDLVPL 183

Query: 231 EEVW--QSLYALGVDQSIRKI-KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285
           E+V     L      ++ ++I  +        +    +   ++ L++   L  + +++
Sbjct: 184 EQVLGHAELKMQQYMKADQEIWVNTKKKLRKHWLAKLDQDPNTSLKEAATLWWKPEIR 241


>gi|312864716|ref|ZP_07724947.1| endopeptidase Clp [Streptococcus downei F0415]
 gi|311099843|gb|EFQ58056.1| endopeptidase Clp [Streptococcus downei F0415]
          Length = 196

 Score = 38.4 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 60/197 (30%), Gaps = 31/197 (15%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G +ED  +  +I ++  +   DS+  + + +++PGGS  AG AI   +  +K+  
Sbjct: 27  IVMLTGPVEDNMANSIIAQLLFLDAQDSSKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +  
Sbjct: 87  QTIVMGMAASMGTIIASSGAKGKRFMLPHAEYMIHQPMGGTGGGTQQSDMAIAAEHLL-- 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      +     ++++++      K    ++   W T  
Sbjct: 145 --------------------------QTRETLEKILADNSGQTLKKIHADAERDNWMTAK 178

Query: 217 EAKKVGLIDVVGGQEEV 233
           E    G ID +    E+
Sbjct: 179 ETLDYGFIDEIMENNEL 195


>gi|150397489|ref|YP_001327956.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           medicae WSM419]
 gi|150029004|gb|ABR61121.1| Endopeptidase Clp [Sinorhizobium medicae WSM419]
          Length = 195

 Score = 38.4 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 38/195 (19%)

Query: 41  IAIRGQIED--SQELIERI--ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           I I G I    +Q++  ++     + DD      + ++SPGG   +G++I   I+ VK +
Sbjct: 30  IFIYGNITQELAQKVCSQLVALAAASDDDIR---IFVNSPGGHVESGDSIHDMIKFVKPK 86

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
              I      +A A   ++      +    +             +   ++          
Sbjct: 87  VWTIGTGWVASAGALIYVAAPKEQRLCLPNTRFLLHQPSGGTRGMASDIE---------- 136

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG- 215
                               +    +        R+ SE+   P +K    +D   W G 
Sbjct: 137 --------------------IQAREIIKMNERLNRIFSEATGQPVEKIAKDTDRDYWLGA 176

Query: 216 AEAKKVGLIDVVGGQ 230
            EAK  GL+  +   
Sbjct: 177 EEAKAYGLVSRIVTS 191


>gi|46241425|gb|AAS82912.1| capsid protein [Wolbachia phage WO]
          Length = 127

 Score = 38.4 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Y  FV+L++ +R +  +K      G  + G +A ++GL D V    E    
Sbjct: 7   YEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFINK 56


>gi|85713380|ref|ZP_01044388.1| Periplasmic serine protease, ClpP family protein [Idiomarina
           baltica OS145]
 gi|85692796|gb|EAQ30786.1| Periplasmic serine protease, ClpP family protein [Idiomarina
           baltica OS145]
          Length = 72

 Score = 38.4 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           ++ G +WTG EA ++GL+D V   +     +        I K++           +    
Sbjct: 1   MATGEVWTGTEALELGLVDEVITSD---AWMLKQLDTHRILKVEYSIKKP---LSERFAK 54

Query: 267 SISSLLEDTIPLMKQTKV 284
             ++L+        ++ V
Sbjct: 55  GAATLVNTLKSSFTRSDV 72


>gi|269964374|ref|ZP_06178616.1| hypothetical protein VMC_00460 [Vibrio alginolyticus 40B]
 gi|269830871|gb|EEZ85088.1| hypothetical protein VMC_00460 [Vibrio alginolyticus 40B]
          Length = 458

 Score = 38.4 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 74/241 (30%), Gaps = 11/241 (4%)

Query: 36  PHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI-QK 92
             V  + ++G I    S  L   IE    +   + +I+ + +PGG   A   I  AI   
Sbjct: 21  NTVWIVPVKGAIGPATSDYLSREIEEAQLN-GVSLVILEMDTPGGLDSAMRDIIHAITTS 79

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL--FQYPYVKPFLDKLGV 150
                  +      AASAG  I  AS++   AE + +G+   +     P      D    
Sbjct: 80  STPIATWVGPSGSRAASAGTYILLASHVAAMAEATNLGAATPVALGGAPQPPSSDDGKDQ 139

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
           + +       +      ++   +   +            +      RN  + +   +S+ 
Sbjct: 140 NAEETSEGTNEGSEKVPAKTAMEKKVINDARAYIKGLAKLH----GRNAEWAE-KAVSEA 194

Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270
                 EA ++ +ID +    E           +   +    +     W     +     
Sbjct: 195 ASLDATEALELNVIDYIANSPEDLVKAIDGQTVKVNNRDVTLSLENPVWIERTPDWRAEM 254

Query: 271 L 271
           L
Sbjct: 255 L 255


>gi|149882820|ref|YP_001294799.1| Clp protease [Microbacterium phage Min1]
 gi|148763451|gb|ABR10469.1| Clp protease [Microbacterium phage Min1]
          Length = 399

 Score = 38.4 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 66/203 (32%), Gaps = 44/203 (21%)

Query: 31  VEDNSPHVARIAIRGQIEDS-------QELIERIERISRDDSATALIVSLSSPGGSAYAG 83
            + ++P  A + I  +I +S       + L++ I  +        + V ++SPGG+A+ G
Sbjct: 22  GDGDAPSTADVYIYDEIGESWWGGIAPKALVDEITAL----DVAEMTVHINSPGGAAWDG 77

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
             I  A++  K +  V+            L + A+++I     ++  + G          
Sbjct: 78  ITIMNALRAHKAQVHVVV---------DGLAASAASVIAMGGDTITMNRGAQMMIHDASG 128

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            +      +++V +   K                                +       ++
Sbjct: 129 GVWGNAAEVEAVATILHKLS-----------------------DSIADTYAARTGGTREQ 165

Query: 204 TLVLSDGRIW-TGAEAKKVGLID 225
              +     W T  EA   GL D
Sbjct: 166 WRAVMKDEAWYTAEEAVAAGLAD 188


>gi|114770186|ref|ZP_01447724.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /
           3-hydroxybutyryl-CoA epimerase [alpha proteobacterium
           HTCC2255]
 gi|114549023|gb|EAU51906.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /
           3-hydroxybutyryl-CoA epimerase [alpha proteobacterium
           HTCC2255]
          Length = 727

 Score = 38.4 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 82/264 (31%), Gaps = 26/264 (9%)

Query: 35  SPHVARIAIRGQ-----IEDSQELIER---IERISRDDSATALIVSL--SSPGGSAYAGE 84
           +  VA I+         I D Q L +    I++   D+    +I++   S+  G      
Sbjct: 9   NDGVAVISWNTPTRNMNIMDLQSLSDLEIKIDKALSDNDVIGVIITSGKSNFSGGL---- 64

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
                          I+++  + +            +    T  +   G+  +    KP 
Sbjct: 65  -----------DLGCISKIPGIISENYQENLFKGLKVFTNLTRKIELAGINNKDTGGKPI 113

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-K 203
           +  L      V      +    F   NPK      D++         +    R I  +  
Sbjct: 114 VCTLDGDALGVGFGIALSCHKIFVSDNPKGKIGFPDILIGMPPVAGSISRLIRKINKELC 173

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
             +L +G       A K GL+D +   +E+             + I      + Y   D 
Sbjct: 174 ISLLQNGEYINFENAIKHGLVDEMKSSDELIPFAMQWIKSNLKKNIIKPWDMERYSSEDK 233

Query: 264 KNLSISSLLEDTIPLMKQTKVQGL 287
                SSL ++     K++ ++G+
Sbjct: 234 IPKKFSSLEDEIKQANKKSSLKGI 257


>gi|323703643|ref|ZP_08115286.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531415|gb|EGB21311.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfotomaculum nigrificans DSM 574]
          Length = 195

 Score = 38.1 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 58/191 (30%), Gaps = 31/191 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G I+D  +  +I +   +  +D    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 30  IIFIGGPIDDHIANLVIAQFLFLEAEDPEKDIHLYINSPGGVVTAGLAIYDTMQYIKPAV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L + A     A   + +     L                      
Sbjct: 90  STICLGQAASMGSFLLAAGAKGKRYALPQARIMIHQPLG--------------------- 128

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                                      S+H    L   +R+   D           +  E
Sbjct: 129 GVQGQATDIDIHAREILRMREILNERLSHHTGQPLEKIARDTERD--------FFMSAEE 180

Query: 218 AKKVGLIDVVG 228
           AKK G+ID V 
Sbjct: 181 AKKYGIIDEVM 191


>gi|254720097|ref|ZP_05181908.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /
           3-hydroxybutyryl-CoA epimerase [Brucella sp. 83/13]
 gi|265985103|ref|ZP_06097838.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella sp. 83/13]
 gi|306839064|ref|ZP_07471884.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /
           3-hydroxybutyryl-CoA epimerase [Brucella sp. NF 2653]
 gi|264663695|gb|EEZ33956.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella sp. 83/13]
 gi|306405887|gb|EFM62146.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /
           3-hydroxybutyryl-CoA epimerase [Brucella sp. NF 2653]
          Length = 738

 Score = 38.1 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%)

Query: 51  QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106
           QEL   I+ +  DD    ++++    +  G A     E +F+  QK K + P        
Sbjct: 36  QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVKTLF 95

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                                   +   +     +             +      A  +P
Sbjct: 96  DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARVASDAP 143

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
             ++    V++             RL ++      D   +++ G   T   AK +GL+  
Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +   +++ ++   L     ++ ++ W+             +  + L      + + +  G
Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257


>gi|262200926|ref|YP_003272134.1| enoyl-CoA hydratase/isomerase [Gordonia bronchialis DSM 43247]
 gi|262084273|gb|ACY20241.1| Enoyl-CoA hydratase/isomerase [Gordonia bronchialis DSM 43247]
          Length = 312

 Score = 38.1 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 61/231 (26%), Gaps = 21/231 (9%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF---RAIQKVKNRKPVITEVHEMAA 108
            L     R   D +   +++  +    SA     I    R           +   H   +
Sbjct: 57  SLDAAFRRAVDDPAIKVIVLRANGKHFSAGH--DIGTPERDFDTFYPNVATLYWDHTDRS 114

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD--KLGVSIKSVKSSPMKAEPSP 166
            A   ++    + V            +    +         L      + +S       P
Sbjct: 115 GADQRLAREMEVYVGMCRRWRDMPKPVIAQVHGACIAGGLMLAWICDFIVASDDAFFSDP 174

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
            + +    V+                             +L  G  +T A+A + G+++ 
Sbjct: 175 VARMGIPGVEYFAHAYALGTRRAK--------------EILFTGERFTAAQAAEWGMVNH 220

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277
           V  ++E+   + A+    +   I+     K         + + + ++    
Sbjct: 221 VVPRDELAAKVDAIAGQIASMPIQGLMLSKKAVNICEDQMGLRNAMDSVFG 271


>gi|282899048|ref|ZP_06307029.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
 gi|281195964|gb|EFA70880.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
          Length = 201

 Score = 38.1 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 60/182 (32%), Gaps = 31/182 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGGS  AG  IF  ++ ++     I      +  A  
Sbjct: 42  IVAQLLFLDSEDPEKDIYMYINSPGGSVTAGMGIFDTMKNIRPNVCTICTGLAASMGAFL 101

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L +      ++   S +     L      +     + +  + +     K           
Sbjct: 102 LSAGTKGKRMSLPHSRIMIHQPLG---GAQGQATDIEIQAREILYHKRKLNEYL------ 152

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQE 231
                                +E    P+D+    ++   + +  EA++ GLID V  + 
Sbjct: 153 ---------------------AEHTGQPFDRIAEDTERDFFMSPQEAREYGLIDQVIDRH 191

Query: 232 EV 233
             
Sbjct: 192 AA 193


>gi|218297188|ref|ZP_03497850.1| protein of unknown function DUF114 [Thermus aquaticus Y51MC23]
 gi|218242465|gb|EED09004.1| protein of unknown function DUF114 [Thermus aquaticus Y51MC23]
          Length = 278

 Score = 38.1 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 64/183 (34%), Gaps = 21/183 (11%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           I+DS++++  I     D +   + + L +PGG   A E I  A+ +   +  V   V   
Sbjct: 68  IDDSEQVLRAIR--LTDKNVP-IDLVLHTPGGLVLAAEQIAEALLRHPAK--VTVFVPHY 122

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           A S G LI+ A++ IV  E +++G +            L  L            K     
Sbjct: 123 AMSGGTLIALAADEIVMDENAVLGPVDPQLGQYPAASVLKVL----------EKKPIQEI 172

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA------EAKK 220
             +    A    + +          L         ++   +     WT        +A++
Sbjct: 173 DDQTLILADVAEKALKQVKATVKNLLKKHMPEDRAEEVAHILSQGTWTHDYPIDVAQARE 232

Query: 221 VGL 223
           +GL
Sbjct: 233 LGL 235


>gi|15672655|ref|NP_266829.1| ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis
           subsp. lactis Il1403]
 gi|281491135|ref|YP_003353115.1| ATP-dependent endopeptidase Clp proteolytic subunit ClpP
           [Lactococcus lactis subsp. lactis KF147]
 gi|18202801|sp|Q9CHQ3|CLPP_LACLA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|12723580|gb|AAK04771.1|AE006300_6 ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis
           subsp. lactis Il1403]
 gi|281374885|gb|ADA64404.1| ATP-dependent endopeptidase Clp, proteolytic subunit ClpP
           [Lactococcus lactis subsp. lactis KF147]
 gi|326406161|gb|ADZ63232.1| ATP-dependent Clp protease, protease subunit [Lactococcus lactis
           subsp. lactis CV56]
          Length = 199

 Score = 38.1 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 47/155 (30%), Gaps = 2/155 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 30  IIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 89

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S           +       +          D   V+ + +K+
Sbjct: 90  QTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGTGQGTQQTDMAIVAEQLLKT 149

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                +    +              D        L
Sbjct: 150 RKRLEQILADNSNRSLEQIHKDAERDHWMDAKETL 184


>gi|256028827|ref|ZP_05442661.1| protease IV [Fusobacterium sp. D11]
          Length = 158

 Score = 38.1 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 4/127 (3%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
           F+L K K +   +SL  +  V F+ +  VED    ++ ++I   +   + L++ +E +  
Sbjct: 27  FILGKFKNKDK-ISLKGVKTVVFNLNELVEDYM--ISTVSINKTL-SHEALLKALENLVN 82

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           D     +I+ +     S    E I    +K+   K +I         +  +   A+ I +
Sbjct: 83  DKKIEKIIIDVDEVDLSRVHIEEIKEIFEKLSVNKEIIAIGTTFDEYSYQVSLLANKIYM 142

Query: 123 AAETSLV 129
                  
Sbjct: 143 LNTKQSC 149


>gi|254171900|ref|ZP_04878576.1| periplasmic serine protease [Thermococcus sp. AM4]
 gi|214033796|gb|EEB74622.1| periplasmic serine protease [Thermococcus sp. AM4]
          Length = 280

 Score = 38.1 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           +EDS+E++  I    +D     +I    +PGG   A   I RA+++      VI   + M
Sbjct: 73  VEDSEEILRAIRAAPKDKPIDLII---HTPGGLVLAATQIARALKEHPAETRVIVPHYAM 129


>gi|56269518|gb|AAH87510.1| LOC496087 protein [Xenopus laevis]
          Length = 243

 Score = 38.1 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+DS    ++ ++  +  + +   + + ++SPGGS  AG AI+  +Q + N  
Sbjct: 56  IICVMGPIDDSLSSVVVAQLLFLQSESNKKPIHMYINSPGGSVTAGLAIYDTMQYILN-- 113

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I       A++   +  A+       +     I +       +     + +  + +  
Sbjct: 114 -PICTWCVGQAASMGSLLLAAGSSGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEILK 172

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216
                                             + ++    P      + +  R  +  
Sbjct: 173 LK---------------------------KQINEIYAKHTRQPLSVIESVMERDRYMSPT 205

Query: 217 EAKKVGLIDVV 227
           EA++ G++D V
Sbjct: 206 EAQEFGILDKV 216


>gi|33598513|ref|NP_886156.1| enoyl-CoA hydratase [Bordetella parapertussis 12822]
 gi|33574642|emb|CAE39293.1| putative enoyl-CoA hydratase/isomerase [Bordetella parapertussis]
          Length = 270

 Score = 38.1 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 64/224 (28%), Gaps = 25/224 (11%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           +EL   +    RD S  A+++S +    SA         +++   ++   T         
Sbjct: 38  EELDRALGMAVRDASVKAIVISGNGDHFSAGH------DLKEAAAKRSNFTVEQRWEFEE 91

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
            Y +  A +I    + ++    G      ++   +         + +S       P    
Sbjct: 92  RYYLGYAMHIYDCPKPTIAQVSGACIAGGFMVANM------CDLIVASDDAFFSDPVC-- 143

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                        +        V  +R         L  G   +  EA  +G+++ V  +
Sbjct: 144 -------QTLATAAVEVMIHPWVMGARKAK----EFLFLGERMSAREALAIGMVNKVVAR 192

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLED 274
            E+      +    +          K      L+   + S ++ 
Sbjct: 193 AELQAETERMAQRIAACDPFALRLVKRSINRGLEMQGLRSAIDA 236


>gi|237736664|ref|ZP_04567145.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420526|gb|EEO35573.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           mortiferum ATCC 9817]
          Length = 191

 Score = 38.1 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 54/190 (28%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  +I+D  +  ++ ++  +  +D    +I+ ++SPGG   AG AI+  +  +K   
Sbjct: 28  IIFLGTEIDDNVANAIVAQLLFLEAEDPEKDIIMYINSPGGVVTAGMAIYDTMNYIKPDV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A     A E S +     L                      
Sbjct: 88  QTVCIGQAASMGALLLSAGAKGKRFALEHSRIMIHQPLG--------------------- 126

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                      +               +                +           +  E
Sbjct: 127 GARGQATDIEIQAKEILRMKEMLSQILANVSG--------KSVEEILRDTERDNYMSAQE 178

Query: 218 AKKVGLIDVV 227
           A + GLID V
Sbjct: 179 AVEYGLIDQV 188


>gi|157151545|ref|YP_001450909.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|262283203|ref|ZP_06060970.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus sp.
           2_1_36FAA]
 gi|189082471|sp|A8AYP9|CLPP_STRGC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157076339|gb|ABV11022.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|262261455|gb|EEY80154.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus sp.
           2_1_36FAA]
          Length = 196

 Score = 38.1 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 59/192 (30%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   DS   + + +++PGGS  AG AI   +  +K+  
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +K+
Sbjct: 87  QTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                            ++++++     ++    ++   W +  
Sbjct: 147 RK----------------------------TLEQILADNSGKTVEQIHADAERDYWMSAE 178

Query: 217 EAKKVGLIDVVG 228
           E    G ID + 
Sbjct: 179 ETLAYGFIDEIM 190


>gi|147678370|ref|YP_001212585.1| periplasmic serine proteases [Pelotomaculum thermopropionicum SI]
 gi|146274467|dbj|BAF60216.1| Periplasmic serine proteases [Pelotomaculum thermopropionicum SI]
          Length = 288

 Score = 38.1 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+ ++  I     D       + L +PGG   A E I RA+QK   +  V   V   
Sbjct: 77  IEDSEAVLRAIRLTPDDMPID---LVLHTPGGLVLASEQIARALQKHPAK--VTVFVPHY 131

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           A S G +I+ A++ IV  E +++G +            L+ +   
Sbjct: 132 AMSGGTMIALAADEIVMDENAVLGPVDPQLGEFPAVSVLEVVRQK 176


>gi|126660899|ref|ZP_01731990.1| hypothetical protein CY0110_21440 [Cyanothece sp. CCY0110]
 gi|126617796|gb|EAZ88574.1| hypothetical protein CY0110_21440 [Cyanothece sp. CCY0110]
          Length = 217

 Score = 38.1 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 65/178 (36%), Gaps = 6/178 (3%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS++++  I     D     ++    +PGG   A E I RA+ +  ++  V   V   
Sbjct: 6   IEDSEQVLRAIRLTPPDTPIDLIL---HTPGGLVLATEQIARALIRHPSK--VTVFVPHY 60

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI-KSVKSSPMKAEPS 165
           A S G +++ A++ I+    +++G +            ++ +       +    +     
Sbjct: 61  AMSGGTMLALAADEIIMDANAVLGPVDPQLGNMAAASIINVIQRKPIDKIDDQTLIMGDL 120

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
               +N     +   + D      +        I    T  ++     +  +A ++GL
Sbjct: 121 ALKAINQVQNFVRTLLKDDIPEPKIAPEKIDGIIDLLTTGKITHDCPISVEQASEIGL 178


>gi|322391649|ref|ZP_08065117.1| ATP-dependent Clp protease, protease subunit [Streptococcus peroris
           ATCC 700780]
 gi|321145460|gb|EFX40853.1| ATP-dependent Clp protease, protease subunit [Streptococcus peroris
           ATCC 700780]
          Length = 196

 Score = 38.1 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 2/155 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   DS   + + +++PGGS  AG AI   +  +K   
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +K+
Sbjct: 87  QTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                +    +         +    D        L
Sbjct: 147 RKNLEQILADNSGKSVEQIHVDAERDYWMSAQETL 181


>gi|229133846|ref|ZP_04262669.1| Enoyl-CoA hydratase/isomerase [Bacillus cereus BDRD-ST196]
 gi|228649547|gb|EEL05559.1| Enoyl-CoA hydratase/isomerase [Bacillus cereus BDRD-ST196]
          Length = 263

 Score = 38.1 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
            ++  G  +T   A +VGL++ V  + E       L       K+  ++ P         
Sbjct: 163 EMMFTGEPFTAEVAWRVGLVNHVVPRGEALNKAKELA-----AKMAQFSLPALSLMKQSI 217

Query: 265 NLSISSLLEDTIPLMKQ 281
           N  +SS LED + +  +
Sbjct: 218 NKGLSSSLEDGLKIEAE 234


>gi|167757344|ref|ZP_02429471.1| hypothetical protein CLORAM_02894 [Clostridium ramosum DSM 1402]
 gi|237735579|ref|ZP_04566060.1| ATP-dependent Clp protease proteolytic subunit [Mollicutes
           bacterium D7]
 gi|167703519|gb|EDS18098.1| hypothetical protein CLORAM_02894 [Clostridium ramosum DSM 1402]
 gi|229381324|gb|EEO31415.1| ATP-dependent Clp protease proteolytic subunit [Coprobacillus sp.
           D7]
          Length = 190

 Score = 38.1 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 65/190 (34%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D  S  ++ ++  +   D+   + + ++SPGGS  AG AI+  +  +K   
Sbjct: 29  IILLTGTIDDKMSSSIVGQLLYLESLDNNADIFMYINSPGGSINAGMAIYDTMNFIKCDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L + A     +   S +     L  +      ++     I     
Sbjct: 89  STIVIGMAASMAAFLLSAGAKGKRCSLPNSEIMIHQPLGAFEGQASDIEISAKRI----- 143

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                       +  K    +    +++      ++   R+   +              E
Sbjct: 144 ------------LKQKEKLNLILSKNTNQPIDKIVIDTDRDHFLE------------PDE 179

Query: 218 AKKVGLIDVV 227
           A + GLID V
Sbjct: 180 ALEYGLIDEV 189


>gi|72382132|ref|YP_291487.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. NATL2A]
 gi|115311342|sp|Q46L44|CLPP1_PROMT RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|72001982|gb|AAZ57784.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. NATL2A]
          Length = 196

 Score = 38.1 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 60/180 (33%), Gaps = 31/180 (17%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
            +  ++ ++  +  DD    + + ++SPGGS Y G  IF  +Q VK     +      + 
Sbjct: 38  SANRIVAQLLFLEADDPDKDIFLYINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASM 97

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
            A  L + A     +   S +     L      +     + +    +     K       
Sbjct: 98  GAFLLCAGAKGKRSSLLHSRIMIHQPLG---GARGQASDIRIQADEILFIKDK------- 147

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                                 + +S+    P ++    +D   + + +EA + G+ID V
Sbjct: 148 --------------------LNKELSDRTGQPIERIREDTDRDFYMSPSEAIEYGIIDNV 187


>gi|118579613|ref|YP_900863.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelobacter
           propionicus DSM 2379]
 gi|166201831|sp|A1AN85|CLPP_PELPD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|118502323|gb|ABK98805.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pelobacter
           propionicus DSM 2379]
          Length = 199

 Score = 38.1 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 61/190 (32%), Gaps = 33/190 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D     +I ++  +  +D    + + ++SPGG   +G AI+  ++ +K   
Sbjct: 28  IIFLGGGIDDQVANLIIAQLLFLEAEDPDKDIHLYINSPGGVVTSGMAIYDTMRYIKAPV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L +       +   S +     L  +                   
Sbjct: 88  STICVGQAASMGAVLLAAGEKGKRFSLNHSRIMIHQPLGGFQGQ---------------- 131

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            + +    +         ++++      ++    +D   + +  
Sbjct: 132 --------------ATDISIHAKEILRMKEELNSILADLTGQSKERIEADTDRDYFMSAT 177

Query: 217 EAKKVGLIDV 226
           EA++ GLID 
Sbjct: 178 EAEEYGLIDA 187


>gi|313113728|ref|ZP_07799303.1| Clp protease [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623949|gb|EFQ07329.1| Clp protease [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 406

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 69/217 (31%), Gaps = 37/217 (17%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED----SQELIERIERI--SRDDSATALIVSLSSPGGS 79
            W       +   A + + G I        E+  +      +   +   L V + S GG 
Sbjct: 28  FWEFRNAAETGGTAELLLYGDISRTSWWGDEVTPQAFAADLATIPAMDDLTVRICSGGGD 87

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
            +A +AI   ++                 +    ++     I A+  ++V S   + +  
Sbjct: 88  VWAAQAIGAMLE-----------------NRLGTVTAQIEGICASAATIVASHCKVVKAA 130

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
               ++                 + +P   V+ + ++ + D +       +   ++    
Sbjct: 131 EDATYMIH-------------PIKVNPNGFVDMEGLKQLMDALTVMRTNVLNQYAKKTGH 177

Query: 200 PYDKTLVLSDGR-IWTGAEAKKVGLIDVVGGQEEVWQ 235
             ++     D    WT AEAK+ G ID +    +  +
Sbjct: 178 TVEEVAAWMDATSWWTAAEAKENGFIDEITESNQTAK 214


>gi|260654935|ref|ZP_05860423.1| Clp protease [Jonquetella anthropi E3_33 E1]
 gi|260630250|gb|EEX48444.1| Clp protease [Jonquetella anthropi E3_33 E1]
          Length = 195

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 59/190 (31%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  +I    +  ++ +I  +  D     + + ++SPGG   +G AI+  ++ VK   
Sbjct: 31  IIFLGSEINSLVANSIVAQILFLESDQPDRDICLYINSPGGEVTSGLAIYDTMRYVKCDI 90

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++  L +      +A   S V     +         ++     I     
Sbjct: 91  STIVVGMAASMASILLAAGTPGKRIALPNSQVMIHQPMGGAYGQASDVEIHAREI----- 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                       +  +        + +        V   R+               + AE
Sbjct: 146 ------------LKTRQRLNEILALHTGQPLSRIEVDTDRDH------------FLSAAE 181

Query: 218 AKKVGLIDVV 227
           A+  GL+D V
Sbjct: 182 AQSYGLVDRV 191


>gi|124514481|gb|EAY55994.1| ATP-dependent Clp protease, proteolytic subunit [Leptospirillum
           rubarum]
          Length = 203

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 53/180 (29%), Gaps = 31/180 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +I ++  +  +D++  + + ++SPGG   AG AI+  +Q +K     I      +  A  
Sbjct: 43  VIAQLLFLEAEDASKDINLYINSPGGVVTAGLAIYDTMQYIKPDVSTICVGQAASMGAVL 102

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     A   + +     L         ++                          
Sbjct: 103 LAAGADGKRFALPNARIMIHQPLGGVQGQATEIEIHARE--------------------- 141

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQE 231
                    +         ++++       K           +  +AK  GL+D V    
Sbjct: 142 ---------ILKMREHLNGILAKHTKQSLAKVSQDTDRDYFLSAEDAKAYGLVDSVISSH 192


>gi|239608495|gb|EEQ85482.1| enoyl-CoA hydratase/isomerase [Ajellomyces dermatitidis ER-3]
 gi|327353521|gb|EGE82378.1| enoyl-CoA hydratase/isomerase [Ajellomyces dermatitidis ATCC 18188]
          Length = 269

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 18/35 (51%)

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           + +G  ++G EA +  ++D +GG +E    +    
Sbjct: 169 VQEGCRFSGKEALEHSIVDGLGGLDEALALIEKRK 203


>gi|261187695|ref|XP_002620266.1| enoyl-CoA hydratase/isomerase [Ajellomyces dermatitidis SLH14081]
 gi|239594073|gb|EEQ76654.1| enoyl-CoA hydratase/isomerase [Ajellomyces dermatitidis SLH14081]
          Length = 269

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 18/35 (51%)

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           + +G  ++G EA +  ++D +GG +E    +    
Sbjct: 169 VQEGCRFSGKEALEHSIVDGLGGLDEALALIEKRK 203


>gi|34558484|ref|NP_908299.1| ATP-dependent Clp protease proteolytic subunit [Wolinella
           succinogenes DSM 1740]
 gi|60389700|sp|Q7M7M3|CLPP_WOLSU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|34481778|emb|CAE11199.1| ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT [Wolinella
           succinogenes]
          Length = 195

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I D  +  ++ ++  +  +D    + + ++SPGG   +G +I+  +  VK   
Sbjct: 29  IIMLSGEINDGVASSIVSQMLFLEAEDPEKDIYLYINSPGGVITSGMSIYDTMNYVKPDI 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L         +   S +     L         ++           
Sbjct: 89  CTICIGQAASMGAFLLSCGTKGKRFSLPNSRIMIHQPLGGAQGQATDIE----------- 137

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                              +    +         +++ +   P +K    +D   + +  
Sbjct: 138 -------------------IQAKEILRLKSILNGILASNTGQPLEKIAKDTDRDFFMSAQ 178

Query: 217 EAKKVGLIDVV 227
           E+K+ GLID V
Sbjct: 179 ESKEYGLIDNV 189


>gi|198283159|ref|YP_002219480.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667656|ref|YP_002425388.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247680|gb|ACH83273.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519869|gb|ACK80455.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 214

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 60/190 (31%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + GQ+ED  +  ++ ++  +  ++    + + ++SPGGS  AG AI+  +Q V+ + 
Sbjct: 44  VVFLVGQVEDMMANLVVAQLLFLEAENPDKDIALYINSPGGSVTAGMAIYDTMQFVRPKI 103

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A     A   + +        +      ++     I  +  
Sbjct: 104 STVCIGQAASMGAVLLAAGAEGKRYALPNARIMLHQPSGGFQGQAHDIEIHTKEILRI-- 161

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                                    +      V    + R                +  E
Sbjct: 162 ------------------------RERLNDILVHHTGQGRERIEQDLDRDF---FMSAEE 194

Query: 218 AKKVGLIDVV 227
           A+   L+D V
Sbjct: 195 AQTYHLVDAV 204


>gi|146341127|ref|YP_001206175.1| ATP-dependent Clp protease proteolytic subunit [Bradyrhizobium sp.
           ORS278]
 gi|146193933|emb|CAL77950.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Bradyrhizobium sp. ORS278]
          Length = 210

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     ++ ++  +  ++    + + ++SPGG   +G AI+  +Q ++   
Sbjct: 37  IIFVTGPVEDGMATLIVAQLLFLEAENPKKEIAMYINSPGGVVTSGLAIYDTMQFIRPAV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      AAS G L+ CA +  +                                   
Sbjct: 97  STLC--TGQAASMGSLLLCAGHKDMR-----FSLPNSRIMVHQPSGGFQG---------- 139

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +    + S       +  +    PY      L   +  T  
Sbjct: 140 -------------QATDIMLHAQEILSLKKRLNEIYVKHTGQPYKAIEDALERDKFLTAE 186

Query: 217 EAKKVGLIDVVGG 229
            A++ GLID V  
Sbjct: 187 AAQEFGLIDKVLD 199


>gi|150401562|ref|YP_001325328.1| hypothetical protein Maeo_1139 [Methanococcus aeolicus Nankai-3]
 gi|150014265|gb|ABR56716.1| protein of unknown function DUF114 [Methanococcus aeolicus
           Nankai-3]
          Length = 272

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           +EDS+E++  I   S D     ++    +PGG   A E I  A+++ K +  VI   + M
Sbjct: 67  MEDSEEVLRAIRMTSDDVPIDLIL---HTPGGLVLASEQIAMALKEHKAKTTVIIPHYAM 123

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           +   G LIS A + I+  + +++G +            L+ +    
Sbjct: 124 SG--GSLISLAVDEIIMDKNAVMGPVDPQIGQYPAASILNVIDTKY 167


>gi|300933116|ref|ZP_07148372.1| enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
           [Corynebacterium resistens DSM 45100]
          Length = 781

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 67/243 (27%), Gaps = 27/243 (11%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
           E + +++          +++  +S   + +AG  I   I+                A A 
Sbjct: 40  ETVAKVKEAVEAGEVKGIVL--ASAKKTFFAGGDIKSMIKATPED-----------APAL 86

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
                     +    +L   +        +   L+    +   + S     +        
Sbjct: 87  TKQIDTMKDNLRTLETLGVPVAAAINGTALGGGLEIALAAHHRIASDAKGLKVGL----- 141

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
                    +        V  V     +      VL+ GR +  A+A+K GLID +   +
Sbjct: 142 -----PEVTLGLLPGGGGVTRVVRMLGLQDALMKVLTTGRQFNAADAQKTGLIDEIVPAD 196

Query: 232 EVWQSLYALGVDQSIRK----IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287
           ++  +      +    K     + +  P            + S   +    +K   +   
Sbjct: 197 QLLDAAKKWVKENPEAKQPWDTEGYKVPGGTPTNPKLAAFLPSFPANVTKQIKGAPMPAP 256

Query: 288 WAV 290
            A+
Sbjct: 257 KAI 259


>gi|88763688|gb|ABD49513.1| capsid protein [Wolbachia phage WO]
          Length = 116

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
             FV+L++ +R +  +K      G  + G +A ++GL D V    E   
Sbjct: 1   EMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFIN 48


>gi|262037349|ref|ZP_06010814.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia
           goodfellowii F0264]
 gi|261748606|gb|EEY35980.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia
           goodfellowii F0264]
          Length = 189

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ED  +  +I ++  +   D    +++ ++SPGG   AG AI+  ++ +K   
Sbjct: 28  IIFLGGEVEDNIANSIIAQLLFLDAQDKEKDIVMYINSPGGVVTAGLAIYDTMRHIKADV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L S A     +   S V               +      I+ +  
Sbjct: 88  STVCIGQAASMGAVLLASGAKGKRYSLPNSRVMIHQPSGGARGQATDIQIQAKEIEKI-- 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                             ++SE+   P ++           +  
Sbjct: 146 ----------------------------KKTLNEILSEATGKPVEEIYRDTERDNFMSSE 177

Query: 217 EAKKVGLIDVV 227
           EA   G+ID +
Sbjct: 178 EALAYGIIDKI 188


>gi|68535224|ref|YP_249929.1| hypothetical protein jk0159 [Corynebacterium jeikeium K411]
 gi|68262823|emb|CAI36311.1| fadB1 [Corynebacterium jeikeium K411]
          Length = 775

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 56/195 (28%), Gaps = 23/195 (11%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
           EL+E+++       A  ++++  S   + +AG  I   I+        I           
Sbjct: 38  ELVEKLQGAVESGEAKGVVIT--SAKKTFFAGGDIKSMIKSTPEDAEAI----------- 84

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
                     + A  +L   +        +   L+    +   + S     +        
Sbjct: 85  TKQINGMKAGLRAIETLGVPVVAAINGAALGGGLEIALATHHRIASDAKGLKVGL----- 139

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
                    +        V  V     I      VL+ GR +   +A K GLID V   +
Sbjct: 140 -----PEVTLGLLPGGGGVTRVVRMLGIQDALMKVLTTGRQFRAEDALKTGLIDEVAPAD 194

Query: 232 EVWQSLYALGVDQSI 246
           ++  +      +   
Sbjct: 195 QLIDAAKKWIKENPE 209


>gi|330943556|gb|EGH45893.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 64

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276
           +A  +GL+D +G    V + +         + I ++   ++ +    K L  S  + + I
Sbjct: 1   QAVALGLVDGLGSASYVARDVIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERI 52

Query: 277 PLMKQTKVQGL 287
            ++       L
Sbjct: 53  AMLVGFNGPSL 63


>gi|301622698|ref|XP_002940664.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial [Xenopus (Silurana) tropicalis]
          Length = 247

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+DS    ++ ++  +  + +   + + ++SPGGS  AG AI+  +Q + N  
Sbjct: 60  IICVMGPIDDSLSSLVVAQLLFLQSESNKKPIHMYINSPGGSVTAGLAIYDTMQYILN-- 117

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I       A++   +  A+       +     I +       +     + +  + +  
Sbjct: 118 -PICTWCVGQAASMGSLLLAAGSSGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEILK 176

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216
                                             + ++    P      + +  R  +  
Sbjct: 177 LK---------------------------KQINEIYAKHTRQPLSVIESVMERDRYMSPT 209

Query: 217 EAKKVGLIDVV 227
           EA++ G++D V
Sbjct: 210 EAQEFGILDKV 220


>gi|297526178|ref|YP_003668202.1| protein of unknown function DUF114 [Staphylothermus hellenicus DSM
           12710]
 gi|297255094|gb|ADI31303.1| protein of unknown function DUF114 [Staphylothermus hellenicus DSM
           12710]
          Length = 286

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 6/177 (3%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+ ++  I     +    ALI+   +PGG   A   I  A+++ K +K VI   + M
Sbjct: 72  IEDSEAVLRAIRNTPENQPI-ALILH--TPGGLVLAASQIAMALKRHKGKKIVIVPHYAM 128

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           +   G LI+ A++ I+    +++G +    Q P        L    K +K      +   
Sbjct: 129 SG--GTLIALAADEIIMDPDAVLGPLDPQLQTPKGTFPAPSLIKIAK-MKGDKASDDTLI 185

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
           + ++  KA++ +Q+ +       +     S           +     T   AK++GL
Sbjct: 186 YGDIAEKALREIQEFIVQLLKDKMPEEKASEVAKKLTEGYYTHDYPITVEHAKELGL 242


>gi|259048143|ref|ZP_05738544.1| aspartate transaminase [Granulicatella adiacens ATCC 49175]
 gi|259035204|gb|EEW36459.1| aspartate transaminase [Granulicatella adiacens ATCC 49175]
          Length = 388

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 50/167 (29%), Gaps = 6/167 (3%)

Query: 44  RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103
            G +  + +L E IE  + D +  A+++   S        +     + +V     +    
Sbjct: 146 DGFVLTADKLRETIE-ANPDKNFKAVVLVYPSNPTGVTYSKEQLEDLAEVIKEHQLWALC 204

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
            E+ A   Y  +  S   +  E ++V     L +   +  +     +      +  +K  
Sbjct: 205 DEVYAELTYDKTHYSLANILPEQTIVI--TGLSKSHAMTGWRIGFILGPTHFMNEVVKTH 262

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYH---WFVRLVSESRNIPYDKTLVL 207
               +     A       +          +   SE R+    +   L
Sbjct: 263 QYMVTAPTSFAQYGALAAMLHGQDDCAKMMVEYSERRDYLAAELKKL 309


>gi|218264188|ref|ZP_03478072.1| hypothetical protein PRABACTJOHN_03762 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222234|gb|EEC94884.1| hypothetical protein PRABACTJOHN_03762 [Parabacteroides johnsonii
           DSM 18315]
          Length = 238

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 47/182 (25%), Gaps = 12/182 (6%)

Query: 52  ELIERIERISRDDSATALIVSLS-SPGGSAYAGEAIFRAIQKVKNRKPV----ITEVHEM 106
              + I++I   D+  A+I+S   S  GSA++   I   + K              +   
Sbjct: 26  HFDKAIKKIQTMDNIDAIIISGDLSNDGSAWSYNYIDNLLAKTNIPTFCCPGNHDNLDIF 85

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
             S          + +    + +    V         F     + +      P       
Sbjct: 86  YGSHKSWFYKNCELFMLNGWTFIMLNSV-MAGKSRGNFYPDKFLDLLKHSCGPTVIVLHH 144

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESR----NIPYDKTLVLSDGRIWTGAEAKKVG 222
                   +          ++  +      R       +   +   DG I++   A  +G
Sbjct: 145 PPIEQDGWLNRKLLENRDVFNDIIHKYKNIRLVLYGHTHHHEIKTIDGIIYSS--ASSIG 202

Query: 223 LI 224
             
Sbjct: 203 FA 204


>gi|253796890|gb|ACT35700.1| capsid protein [Wolbachia phage WO]
          Length = 99

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Y  FV+L++ +R +  +K      G  + G +A ++GL D V    E    
Sbjct: 1   YEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFINK 50


>gi|254712568|ref|ZP_05174379.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /
           3-hydroxybutyryl-CoA epimerase [Brucella ceti M644/93/1]
 gi|254715640|ref|ZP_05177451.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /
           3-hydroxybutyryl-CoA epimerase [Brucella ceti M13/05/1]
 gi|261217389|ref|ZP_05931670.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella ceti
           M13/05/1]
 gi|261320262|ref|ZP_05959459.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella ceti
           M644/93/1]
 gi|260922478|gb|EEX89046.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella ceti
           M13/05/1]
 gi|261292952|gb|EEX96448.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella ceti
           M644/93/1]
          Length = 738

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%)

Query: 51  QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106
           QEL   I+ +  DD    ++++    +  G A     E +F+  QK K + P        
Sbjct: 36  QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                                   +   +     +             +      A  +P
Sbjct: 96  DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARVASDAP 143

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226
             ++    V++             RL ++      D   +++ G   T   AK +GL+  
Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTMGSSLTAQRAKAMGLVTE 198

Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286
           +   +++ ++   L     ++ ++ W+             +  + L      + + +  G
Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257


>gi|149010631|ref|ZP_01832002.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|149013224|ref|ZP_01834010.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|147762975|gb|EDK69920.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|147765112|gb|EDK72041.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP19-BS75]
          Length = 147

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 2/110 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   DS   + + +++PGGS  AG AI   +  +K   
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             I      +       S A         +       +          D 
Sbjct: 87  QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDN 136


>gi|116054180|ref|YP_788624.1| putative membrane-bound protease [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115589401|gb|ABJ15416.1| putative membrane-bound protease [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 443

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 61/209 (29%), Gaps = 27/209 (12%)

Query: 33  DNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
             S  V  +++ G I    +  L+  IER + D  A  +++ L +PGG   +   I +AI
Sbjct: 22  AASGPVRVLSVDGAIGPASADYLVRGIERAAED-GAQLVVLELDTPGGLDASMRRIVKAI 80

Query: 91  QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
                            +        A +   AA                    L     
Sbjct: 81  LA---------------SQVPVAGFVAPSGARAASAGTYILYACHIAAMAPGTNLGAATP 125

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSD 209
                    +     P  +   +  + M     +    ++R +++ R    +     + +
Sbjct: 126 VR-------LGTPDKPAEKPPARDAEPMARKQVNDAAAYIRGLAQLRGRNVEWAERAVRE 178

Query: 210 GRIWTGAEAKKVGLID-VVGGQEEVWQSL 237
                  EA    +ID       ++ + L
Sbjct: 179 AVSLAAHEAAAQRVIDLQARDLPDLLRQL 207


>gi|54295797|ref|YP_128212.1| hypothetical protein lpl2887 [Legionella pneumophila str. Lens]
 gi|53755629|emb|CAH17131.1| hypothetical protein lpl2887 [Legionella pneumophila str. Lens]
          Length = 501

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 80/248 (32%), Gaps = 35/248 (14%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRD 63
           K ++T  + + L    +V    S         +  + I+G I    +  L   I+     
Sbjct: 65  KFMQTSCIFIFLTLFLLVGLQTSFAA-----KIVELNIKGPIGPATADYLERGIKSAQD- 118

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
             A  +++ + +PGG     ++    IQ        I                      +
Sbjct: 119 --ADLIVILIDTPGGL---YDSTRNIIQLFLLSDVPIVTYVSPTG----------ARAAS 163

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
           A T L+ +  +    P  +                            + K    M++ V 
Sbjct: 164 AGTYLMYASTLAAMAPGTQMGAASPVSLGTGFSEGEK----------DEKKKSTMENKVT 213

Query: 184 SSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALG 241
                 +R +++ R    D     +++G+  T  EA   G+++ +   ++++   +  + 
Sbjct: 214 HDAVATIRSLAQLRGRDLDFAEKAVTEGKSITANEALSKGVVNYIAKNRDDLLSQINGIK 273

Query: 242 VDQSIRKI 249
           V Q+ + I
Sbjct: 274 VSQNNKTI 281


>gi|171915864|ref|ZP_02931334.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Verrucomicrobium spinosum DSM 4136]
          Length = 237

 Score = 38.1 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 57/193 (29%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I   I+D     +I ++  +   D    + + ++SPGGS  AG AI+  +Q V    
Sbjct: 44  IIFIGTPIDDQVANIVIAQLLFLQMQDPKKDINIYINSPGGSVTAGLAIYDTMQFVTCDV 103

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    +  A  L +       A   S +    V                       
Sbjct: 104 NTYCIGIAASMGAVLLTAGTKGKRYALPNSHIMIHQVSGGAQG----------------- 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            V+   + +        +++S       +     +D   + +G 
Sbjct: 147 -------------TASDVERTVEFMYRLKRRLNKIISHHTGKTVEAVERDADRDYYMSGE 193

Query: 217 EAKKVGLIDVVGG 229
           EA   G++D V  
Sbjct: 194 EAAAYGIVDKVLD 206


>gi|189502525|ref|YP_001958242.1| hypothetical protein Aasi_1180 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497966|gb|ACE06513.1| hypothetical protein Aasi_1180 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 224

 Score = 38.1 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +   D    + + ++SPGGS Y G  I+  +Q +      I      + +A  
Sbjct: 73  IVAQLLFLESTDPKKDVRLYINSPGGSVYPGLGIYDTMQYIAPDVHTICTGLAASMAAVL 132

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L   A     A   S +     L         ++     +  +                 
Sbjct: 133 LAGGAHKKRYALPHSRILIHQPLGGAQGQASDMEITVKQMLEI----------------- 175

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GAEAKKVGLIDVV 227
                             +++++       K     D   W   +EAK+ G+ID V
Sbjct: 176 -------------KRDLYQILAKHTGKSQGKLEKDGDRDYWMRASEAKEYGIIDEV 218


>gi|257077641|ref|ZP_05572002.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis JH1]
 gi|256985671|gb|EEU72973.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis JH1]
          Length = 176

 Score = 38.1 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 2/114 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D  +  +I ++  +   DS   + + ++SPGGS  AG AIF  +  VK   
Sbjct: 29  IIMLSGPIDDNVANSVIAQLLFLDAQDSEKDIYLYINSPGGSVSAGLAIFDTMNFVKADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
             I      +  +  L +       A   + +     L         ++     
Sbjct: 89  QTIVLGMAASMGSFLLTAGQKGKRFALPNAEIMIHQPLGGAQGQATEIEIAARH 142


>gi|227554886|ref|ZP_03984933.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis HH22]
 gi|257081032|ref|ZP_05575393.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis E1Sol]
 gi|227175979|gb|EEI56951.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis HH22]
 gi|256989062|gb|EEU76364.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis E1Sol]
          Length = 181

 Score = 38.1 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 2/114 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D  +  +I ++  +   DS   + + ++SPGGS  AG AIF  +  VK   
Sbjct: 29  IIMLSGPIDDNVANSVIAQLLFLDAQDSEKDIYLYINSPGGSVSAGLAIFDTMNFVKADV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
             I      +  +  L +       A   + +     L         ++     
Sbjct: 89  QTIVLGMAASMGSFLLTAGQKGKRFALPNAEIMIHQPLGGAQGQATEIEIAARH 142


>gi|165971139|gb|AAI58370.1| clpp protein [Xenopus (Silurana) tropicalis]
          Length = 228

 Score = 38.1 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+DS    ++ ++  +  + +   + + ++SPGGS  AG AI+  +Q + N  
Sbjct: 41  IICVMGPIDDSLSSLVVAQLLFLQSESNKKPIHMYINSPGGSVTAGLAIYDTMQYILN-- 98

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I       A++   +  A+       +     I +       +     + +  + +  
Sbjct: 99  -PICTWCVGQAASMGSLLLAAGSSGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEILK 157

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216
                                             + ++    P      + +  R  +  
Sbjct: 158 LK---------------------------KQINEIYAKHTRQPLSVIESVMERDRYMSPT 190

Query: 217 EAKKVGLIDVV 227
           EA++ G++D V
Sbjct: 191 EAQEFGILDKV 201


>gi|163737901|ref|ZP_02145317.1| carnitinyl-CoA dehydratase [Phaeobacter gallaeciensis BS107]
 gi|161388517|gb|EDQ12870.1| carnitinyl-CoA dehydratase [Phaeobacter gallaeciensis BS107]
          Length = 261

 Score = 38.1 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 20/48 (41%)

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
            R   +    +L  GR +   EA + GL++ +   +++    + L   
Sbjct: 148 KRIPYHIAMELLLTGRWFDAEEAHRWGLVNEIVTADQLLDRAWELARL 195


>gi|85376590|gb|ABC70512.1| capsid protein [Wolbachia phage WO]
          Length = 124

 Score = 38.1 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
           P   +  ++++ ++  V+  Y   V L++ +RN+  +       G  + G +A ++GL D
Sbjct: 1   PPGPMTSESLENLKSEVNRLYGMLVELIARNRNLSVEAIKSTEAGLYF-GEKAVEIGLAD 59

Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
            +    E         +  + + I D     N  
Sbjct: 60  GITILSEFKYINKNRSITMNEQTITDLKEETNNL 93


>gi|289766730|ref|ZP_06526108.1| predicted protein [Fusobacterium sp. D11]
 gi|289718285|gb|EFD82297.1| predicted protein [Fusobacterium sp. D11]
          Length = 170

 Score = 38.1 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 4/127 (3%)

Query: 3   FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
           F+L K K +   +SL  +  V F+ +  VED    ++ ++I   +   + L++ +E +  
Sbjct: 39  FILGKFKNKDK-ISLKGVKTVVFNLNELVEDYM--ISTVSINKTL-SHEALLKALENLVN 94

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
           D     +I+ +     S    E I    +K+   K +I         +  +   A+ I +
Sbjct: 95  DKKIEKIIIDVDEVDLSRVHIEEIKEIFEKLSVNKEIIAIGTTFDEYSYQVSLLANKIYM 154

Query: 123 AAETSLV 129
                  
Sbjct: 155 LNTKQSC 161


>gi|254227609|ref|ZP_04921040.1| Membrane-bound serine protease [Vibrio sp. Ex25]
 gi|262395657|ref|YP_003287510.1| nfed family protein [Vibrio sp. Ex25]
 gi|151939651|gb|EDN58478.1| Membrane-bound serine protease [Vibrio sp. Ex25]
 gi|262339251|gb|ACY53045.1| nfed family protein [Vibrio sp. Ex25]
          Length = 458

 Score = 38.1 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 74/241 (30%), Gaps = 11/241 (4%)

Query: 36  PHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI-QK 92
             V  + ++G I    S  L   +E    +   + +I+ + +PGG   A   I  AI   
Sbjct: 21  NTVWIVPVKGAIGPATSDYLSRELEEAQLN-GVSLVILEMDTPGGLDSAMRDIIHAITTS 79

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL--FQYPYVKPFLDKLGV 150
                  +      AASAG  I  AS++   AE + +G+   +     P      D    
Sbjct: 80  STPVATWVGPSGSRAASAGTYILLASHVAAMAEATNLGAATPVALGGAPQPPSSDDGKDQ 139

Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
           + +       +      ++   +   +            +      RN  + +   +S+ 
Sbjct: 140 NAEETSEGTNEGSEKVPAKTAMEKKVINDARAYIKGLAKLH----GRNAEWAE-KAVSEA 194

Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270
                 EA ++ +ID +    E           +   +    +     W     +     
Sbjct: 195 ASLDATEALELNVIDYIANSPEDLVKAIDGQTVKVNNRDVTLSLENPVWIERTPDWRAEM 254

Query: 271 L 271
           L
Sbjct: 255 L 255


>gi|163743323|ref|ZP_02150703.1| carnitinyl-CoA dehydratase [Phaeobacter gallaeciensis 2.10]
 gi|161383317|gb|EDQ07706.1| carnitinyl-CoA dehydratase [Phaeobacter gallaeciensis 2.10]
          Length = 261

 Score = 38.1 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 20/48 (41%)

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
            R   +    +L  GR +   EA + GL++ +   +++    + L   
Sbjct: 148 KRIPYHIAMELLLTGRWFDAEEAHRWGLVNEIVTADQLLDRAWELARL 195


>gi|317501080|ref|ZP_07959286.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|316897467|gb|EFV19532.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 242

 Score = 38.1 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 63/196 (32%), Gaps = 37/196 (18%)

Query: 41  IAIRGQIEDSQELIERIE-RISRDDSATA---LIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           + + G+I D     + +  ++  D+       + + ++SPGG  +A   I+  +    + 
Sbjct: 23  LYLDGEISDETWFGDEVTPKLFSDELHAGDGNITLWINSPGGDVFAAAQIYNMLMDYPHD 82

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
             V      +AASA  +I+ A   +  +  +++                        ++ 
Sbjct: 83  VTVKI--DALAASAASVIAMAGTKVCMSPVAMMMVHNPA------------------TIA 122

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215
               +        +N     +M      S             +   K   L D   W   
Sbjct: 123 IGDTEEMQKAIDMLNEVKESIMNAYEIKS------------GLSRHKISQLMDAETWMNA 170

Query: 216 AEAKKVGLIDVVGGQE 231
            EA K+G  D +  ++
Sbjct: 171 KEAVKLGFADEILFRD 186


>gi|254453571|ref|ZP_05067008.1| Clp protease [Octadecabacter antarcticus 238]
 gi|198267977|gb|EDY92247.1| Clp protease [Octadecabacter antarcticus 238]
          Length = 195

 Score = 38.1 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 65/191 (34%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I       ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +K + 
Sbjct: 24  IIFVNGPIHSGMSHLIVAQLLHLEAENPKKEISMYINSPGGEVTAGLSIYDTMQYIKPKV 83

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                           + C     + +  ++ G  G+ F  P  +  + +     +    
Sbjct: 84  ST--------------LICGMAASMGSVIAIGGEKGMRFALPNAEVMIHQPSGGSQG--- 126

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                          + + +    ++ +     +L  +             D  +W T  
Sbjct: 127 -------------KAEDILISARHIERTRERMYQLYVKHSGQSLKTVQKALDRDLWMTPL 173

Query: 217 EAKKVGLIDVV 227
           EAK+ G +D +
Sbjct: 174 EAKEWGHLDEI 184


>gi|319787636|ref|YP_004147111.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466148|gb|ADV27880.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 209

 Score = 38.1 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +  ++    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 37  VIFLVGPVEDHVANVIIAQMLFLEAENPEKDISLYINSPGGLVTAGMAIYDTMQYIKPDV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A+    A   S V     L  +      +D           
Sbjct: 97  STICVGQAASMGAVLLAAGAAGKRYALPNSRVMIHQPLGGFQGQATDIDIHARE------ 150

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   + S       ++++      +            + A
Sbjct: 151 ------------------------ILSMRARLNEILAQHTGQSIETIARDTERDNFKSAA 186

Query: 217 EAKKVGLIDVV 227
           EAK  GL+D V
Sbjct: 187 EAKAYGLVDEV 197


>gi|223369879|gb|ACM88806.1| ATP-dependent Clp protease proteolytic subunit [Chlorella
           sorokiniana]
          Length = 201

 Score = 38.1 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 56/179 (31%), Gaps = 29/179 (16%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           + +LI  +  ++ ++    L + ++SPGGS   G A++ A+  +K+    I      + +
Sbjct: 44  ANQLIGIMLYLNAEEQNKGLYIYINSPGGSVTCGIAVYDAMNYIKSDVTTICVGTAASMA 103

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           +  L        +A   S +                                      SE
Sbjct: 104 SFILAGGDRGKRIALPHSRIMIHQPEG---------------------GSQGQASEVLSE 142

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
                    Q     +      L   SR++  D+          +  EAK  GL+D V 
Sbjct: 143 SEEVMRIRRQVGRIYAERTGQPLSRISRDMDRDQ--------FLSAREAKDYGLVDQVA 193


>gi|293401151|ref|ZP_06645295.1| Clp protease [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305277|gb|EFE46522.1| Clp protease [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 241

 Score = 38.1 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 63/198 (31%), Gaps = 37/198 (18%)

Query: 41  IAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           + + G I +      ++  ++ +      +  + V ++SPGG   A   I+  +     +
Sbjct: 16  LFLNGTIAEESWFDDDVTPQLFKDELLSGSGDITVWINSPGGDCVAAAQIYNMLMDY--K 73

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
             V  ++  +AASA  +I+ A   ++ +  S++     +         ++K    +  V 
Sbjct: 74  GNVTVKIDGIAASAASVIAMAGTKVLVSPVSMMMIHNPMTVAFGNTGEMEKAIAMLDEV- 132

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215
                                            +        +   K   L D   W   
Sbjct: 133 -----------------------------KESIINAYEIKTGLSRAKLSHLMDAETWMNA 163

Query: 216 AEAKKVGLIDVVGGQEEV 233
             A ++G  D V  +EE 
Sbjct: 164 NMAVELGFADEVMKREEA 181


>gi|268610677|ref|ZP_06144404.1| peptidase s14, clpp [Ruminococcus flavefaciens FD-1]
          Length = 250

 Score = 38.1 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 61/189 (32%), Gaps = 37/189 (19%)

Query: 44  RGQIEDSQELIERIERIS---RDDSATA-LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV 99
            G I +     + I            +  L V L+SPGG  +A   I+  ++    +  V
Sbjct: 21  NGPISEDTWFGDEITPAMFRNELSKVSGDLTVWLNSPGGDVFAASQIYTMLRNH--KGKV 78

Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
             ++  +AASA  +++ A +  + A T ++            K  + K    +  VK   
Sbjct: 79  TVKIDGIAASAASVVAMAGDETLIAPTGMLMIHNPSTVAFGNKEAMQKAIELLDEVK--- 135

Query: 160 MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEA 218
                                         +    E   +   K   + D   W    +A
Sbjct: 136 ---------------------------ESIINAYEEKSGLSRSKIARMMDEETWLNAKKA 168

Query: 219 KKVGLIDVV 227
           + +GL+D +
Sbjct: 169 QSLGLVDGI 177


>gi|225182027|ref|ZP_03735459.1| protein of unknown function DUF114 [Dethiobacter alkaliphilus AHT
           1]
 gi|225167312|gb|EEG76131.1| protein of unknown function DUF114 [Dethiobacter alkaliphilus AHT
           1]
          Length = 277

 Score = 38.1 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 5/105 (4%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS++++  I     D       + + +PGG   A E I  A++   ++  V   V   
Sbjct: 71  IEDSEQVLRAIRYTPDDMPID---LLIHTPGGLVLASEQIANALKNHPSK--VTVFVPHY 125

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           A S G +I+ A++ I+    +++G +            L  +   
Sbjct: 126 AMSGGTMIALAADEILMDGNAVLGPVDPQIGRYPAVSILKAVRAK 170


>gi|148223587|ref|NP_001088816.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog [Xenopus laevis]
 gi|76779451|gb|AAI06237.1| LOC496087 protein [Xenopus laevis]
          Length = 247

 Score = 38.1 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+DS    ++ ++  +  + +   + + ++SPGGS  AG AI+  +Q + N  
Sbjct: 60  IICVMGPIDDSLSSVVVAQLLFLQSESNKKPIHMYINSPGGSVTAGLAIYDTMQYILN-- 117

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I       A++   +  A+       +     I +       +     + +  + +  
Sbjct: 118 -PICTWCVGQAASMGSLLLAAGSSGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEILK 176

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216
                                             + ++    P      + +  R  +  
Sbjct: 177 LK---------------------------KQINEIYAKHTRQPLSVIESVMERDRYMSPT 209

Query: 217 EAKKVGLIDVV 227
           EA++ G++D V
Sbjct: 210 EAQEFGILDKV 220


>gi|150388889|ref|YP_001318938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alkaliphilus
           metalliredigens QYMF]
 gi|167008644|sp|A6TM61|CLPP_ALKMQ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|149948751|gb|ABR47279.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alkaliphilus
           metalliredigens QYMF]
          Length = 194

 Score = 38.1 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 60/195 (30%), Gaps = 33/195 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  +I D     L+ ++  +  +D    + + ++SPGGS  AG AI+  +  +K   
Sbjct: 29  IIFLGDEINDVTASLLVAQLLFLEAEDPDKDIQIYINSPGGSITAGMAIYDTMNYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   + V     L                      
Sbjct: 89  STICVGMAASMGAFLLAAGAKGKRFALPNAEVMIHQPLGGTRGQA--------------- 133

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
                                + +V         LV E    P ++    +D   +    
Sbjct: 134 --------------EDIRIHAERIVKLRDTLNKILV-ERTGQPLERVQKDTDRDFFMEAK 178

Query: 217 EAKKVGLIDVVGGQE 231
           EAK+ G+ID V    
Sbjct: 179 EAKEYGIIDEVISSR 193


>gi|6723221|dbj|BAA89619.1| capsid protein [Bacteriophage WO]
          Length = 113

 Score = 38.1 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
           Y  F++L++ +R +  +K      G  + G +A ++GL D V    E   
Sbjct: 13  YEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFIN 61


>gi|242398666|ref|YP_002994090.1| NfeD nodulation like protein, probable membrane protein
           [Thermococcus sibiricus MM 739]
 gi|242265059|gb|ACS89741.1| NfeD nodulation like protein, probable membrane protein
           [Thermococcus sibiricus MM 739]
          Length = 451

 Score = 38.1 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 3/117 (2%)

Query: 13  VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALI 70
           V++  + +    F + +     +  V    I+G+I      +    I    R  +A A+I
Sbjct: 2   VVMRKILIAAFLFIFLTPALAQASVVYVAQIKGEITPYTYDQFDRYISEAER-ANANAII 60

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           + L +PGG A A + I   I+  +             A++        + ++A    
Sbjct: 61  ILLDTPGGRADAMQNIIERIKSAEVPVITYVYPPGGMAASAGTYIALGSHLIAMAPG 117


>gi|258570625|ref|XP_002544116.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237904386|gb|EEP78787.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 267

 Score = 38.1 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 24/83 (28%)

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221
            +    +                       +V      P     +++ GR +   EA   
Sbjct: 123 HDYRIQNPSKGYLCLNEVHFGAWLPAPMASIVKHKVGNPATVRDLITAGRRFDSTEALAA 182

Query: 222 GLIDVVGGQEEVWQSLYALGVDQ 244
           G+ID  GG +E    +    + +
Sbjct: 183 GIIDATGGIDEALTFIEKRSLVK 205


>gi|222109346|ref|YP_002551610.1| enoyl-CoA hydratase [Acidovorax ebreus TPSY]
 gi|221728790|gb|ACM31610.1| Enoyl-CoA hydratase/isomerase [Acidovorax ebreus TPSY]
          Length = 254

 Score = 38.1 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/104 (10%), Positives = 28/104 (26%), Gaps = 6/104 (5%)

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG------VDQSIRKI 249
            R   +     +  G +++   A+  GL++ +    +   S   L          ++   
Sbjct: 145 RRLPYHLAMEAILTGDMFSAERAQAHGLVNRLVEPGQALDSALELAQAVAANGPLALIAS 204

Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
           K        W         + +       +   +    +A   P
Sbjct: 205 KRVAQESADWTQAEMFERQAVITAPVFASLDAREGAAAFAEKRP 248


>gi|149178551|ref|ZP_01857138.1| ATP-dependent clp protease proteolytic subunit [Planctomyces maris
           DSM 8797]
 gi|148842569|gb|EDL56945.1| ATP-dependent clp protease proteolytic subunit [Planctomyces maris
           DSM 8797]
          Length = 201

 Score = 38.1 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 53/179 (29%), Gaps = 31/179 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +Q L+ ++  +  DD    +   ++SPGGS  AG AI+  +Q +             +  
Sbjct: 42  AQSLVAQLLFLQFDDPEADIHFYINSPGGSVTAGMAIYDTMQYISCDVATYCIGQAASMG 101

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L + A+    A   S +     L         L+     +                 
Sbjct: 102 ALLLTAGAAGKRNALPNSRIMIHQPLAGMQGTATDLEIHAKEV----------------- 144

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GAEAKKVGLIDVV 227
                                 ++        +K    +D   +    EAK  GLID V
Sbjct: 145 -------------LKMKRRLNEILLHHTGQTLEKIEEDTDRDNFMDAQEAKSYGLIDNV 190


>gi|146321407|ref|YP_001201118.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           98HAH33]
 gi|223933328|ref|ZP_03625316.1| Endopeptidase Clp [Streptococcus suis 89/1591]
 gi|253752247|ref|YP_003025388.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           SC84]
 gi|253754073|ref|YP_003027214.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           P1/7]
 gi|253756007|ref|YP_003029147.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           BM407]
 gi|330833177|ref|YP_004402002.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           ST3]
 gi|166214715|sp|A4W2X9|CLPP_STRS2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|145692213|gb|ABP92718.1| putative ATP-dependent protease proteolytic subunit [Streptococcus
           suis 98HAH33]
 gi|223897978|gb|EEF64351.1| Endopeptidase Clp [Streptococcus suis 89/1591]
 gi|251816536|emb|CAZ52172.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus suis SC84]
 gi|251818471|emb|CAZ56300.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus suis BM407]
 gi|251820319|emb|CAR46838.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus suis P1/7]
 gi|292558838|gb|ADE31839.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus suis
           GZ1]
 gi|319758636|gb|ADV70578.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           JS14]
 gi|329307400|gb|AEB81816.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           ST3]
          Length = 196

 Score = 38.1 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 56/193 (29%), Gaps = 31/193 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D    + + +++PGGS  AG AI   +  +K   
Sbjct: 27  IIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +  
Sbjct: 87  QTIVMGTAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 144

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      + +   ++++++      +    ++   W +  
Sbjct: 145 --------------------------KTRNKLEKILADNSGKTVKQIHKDAERDYWMSAE 178

Query: 217 EAKKVGLIDVVGG 229
           E    G ID +  
Sbjct: 179 ETLAYGFIDQIMD 191


>gi|328910857|gb|AEB62453.1| ATP-dependent Clp protease proteolytic subunit Endopeptidase Clp
           [Bacillus amyloliquefaciens LL3]
          Length = 240

 Score = 38.1 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 50/168 (29%), Gaps = 31/168 (18%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           L V ++SPGGS + G AI   +++   +  V   +  +AAS   +I+ A + I     ++
Sbjct: 59  LNVHINSPGGSVFEGVAICSMLKQH--KAFVNVYIDGLAASIASVIAMAGDAIFMPSNAM 116

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
           +                                         N    Q       S    
Sbjct: 117 MMVHN----------------------------PWTIAMGNANEMRKQADVLDKISESMK 148

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQ 235
              L      +  +    L D   W + +EA   GL D +    +   
Sbjct: 149 ASYLEKAGDKLTKETLDSLMDNETWLSASEAVSYGLADEITAANQAAA 196


>gi|320354136|ref|YP_004195475.1| ATP-dependent Clp protease proteolytic subunit ClpP [Desulfobulbus
           propionicus DSM 2032]
 gi|320122638|gb|ADW18184.1| ATP-dependent Clp protease proteolytic subunit ClpP [Desulfobulbus
           propionicus DSM 2032]
          Length = 200

 Score = 38.1 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 54/181 (29%), Gaps = 31/181 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    +   ++SPGGS  AG AI+  +Q ++     +      +  A  
Sbjct: 44  VVAQLLFLEAEDPDKDITFYINSPGGSVTAGMAIYDTMQYIRCDVATLCMGQAASMGALL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L S A+    A   S +     +  Y      +D                          
Sbjct: 104 LASGAAGKRFALPNSRIMIHQPMGGYQGQATDIDIHARE--------------------- 142

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231
                    +    H    +++        K           +  EA + G+ID V    
Sbjct: 143 ---------ILRMRHDLNTILARHTGKSMKKIQADTERDNFMSATEACEYGIIDKVLTNR 193

Query: 232 E 232
           E
Sbjct: 194 E 194


>gi|296134054|ref|YP_003641301.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermincola
           sp. JR]
 gi|296032632|gb|ADG83400.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermincola
           potens JR]
          Length = 194

 Score = 38.1 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I G I+D  +  +I ++  +  +D    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 29  IIFIGGPIDDMVANLVIAQMLFLEAEDPDKDIHIYINSPGGVVTAGMAIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  +  L +       A   + +     L         +D           
Sbjct: 89  STICMGQAASMGSFLLAAGTKGKRYALPYTRIMIHQPLGGVQGQATDIDIHAKE------ 142

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   +         L+++    P +            +  
Sbjct: 143 ------------------------ILRMKSVLNELLAKHTGQPVEVIARDTERDFFMSAE 178

Query: 217 EAKKVGLIDVV 227
           EA+K G++D V
Sbjct: 179 EARKYGIVDEV 189


>gi|297564880|ref|YP_003683852.1| hypothetical protein Mesil_0404 [Meiothermus silvanus DSM 9946]
 gi|296849329|gb|ADH62344.1| protein of unknown function DUF114 [Meiothermus silvanus DSM 9946]
          Length = 280

 Score = 38.1 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 66/183 (36%), Gaps = 21/183 (11%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           I+DS++++  I     D S   + + L +PGG   A E I  A+ K    K  +   H  
Sbjct: 68  IDDSEQVLRAIR--LTDKSVP-IDLVLHTPGGLVLAAEQIAEALIKHPA-KVTVFVPHYA 123

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            +    +   A  I++     L      L QYP            IK ++  P       
Sbjct: 124 MSGGTLIALAADEIVMDENAVLGPVDPQLGQYPAAS--------VIKVLEHKPASEIDDQ 175

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220
              +   A + +  V  +  +   + + E+R    ++   +     WT        EA+ 
Sbjct: 176 TFILADVARKALIQVHTTVKNLLKKHLEEAR---AEEVAGILSQGTWTHDYPISVEEART 232

Query: 221 VGL 223
           +GL
Sbjct: 233 LGL 235


>gi|148361299|ref|YP_001252506.1| hypothetical protein LPC_3273 [Legionella pneumophila str. Corby]
 gi|148283072|gb|ABQ57160.1| hypothetical protein LPC_3273 [Legionella pneumophila str. Corby]
          Length = 501

 Score = 38.1 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 81/248 (32%), Gaps = 35/248 (14%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRD 63
           K ++T  + + L    +V    S         +  + I+G I    +  L   I+     
Sbjct: 65  KFMQTSCIFIFLTLFLLVGLQTSFAA-----KIVELNIKGPIGPATADYLERGIKSAQD- 118

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
             A  +++ + +PGG     ++    IQ        I                      +
Sbjct: 119 --ADLIVILIDTPGGL---YDSTRNIIQLFLLSDVPIVTYVSPTG----------ARAAS 163

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
           A T L+ +  +    P  +                            + K    M++ V 
Sbjct: 164 AGTYLMYASTLAAMAPGTQMGAASPVSLGTGFSEGEK----------DEKKKSTMENKVT 213

Query: 184 SSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALG 241
                 +R +++ R    D     +++G+  T  EA   G+++ +   ++++   ++ + 
Sbjct: 214 HDAVATIRSLAQLRGRDPDFAEKAVTEGKSITANEALSKGVVNYIAKNRDDLLSQIHGIK 273

Query: 242 VDQSIRKI 249
           V Q+ + I
Sbjct: 274 VSQNNKTI 281


>gi|288818082|ref|YP_003432430.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|288787482|dbj|BAI69229.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|308751684|gb|ADO45167.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Hydrogenobacter thermophilus TK-6]
          Length = 199

 Score = 38.1 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 59/176 (33%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +   D    + + ++SPGGS  AG AI+  +Q +K     I      +  A  
Sbjct: 49  IVAQLLFLEAQDPEKDIYMYINSPGGSVTAGMAIYDTMQYIKPDVVTICIGQAASMGAVL 108

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     A   S +     L               +   + +  +K      +E+  
Sbjct: 109 LAAGAPGKRYALPHSRIMIHQPLGGITG--------QATDIIIHAEEIKRIKHMLNEI-- 158

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227
                               +S+    P ++    +      +  EA++ G++D V
Sbjct: 159 --------------------LSKHTGQPLERIERDVERDYFMSSEEAREYGIVDRV 194


>gi|311031628|ref|ZP_07709718.1| serine peptidase [Bacillus sp. m3-13]
          Length = 444

 Score = 38.1 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 5/134 (3%)

Query: 5   LKKI--KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERIS 61
           +KK+   +      L  +        +H       V  I + G +E      I R  + +
Sbjct: 1   MKKVLRISYVSAFVLALILSALPLLPTHTSSAEKLVHVIPVNGTVEKGLLSFINRSIQTA 60

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
            DD A  ++  + +PGG   A   I    +      P +  V+  A SAG  ++  ++ I
Sbjct: 61  EDDGADLIVFDIHTPGGLVDAATEIANKFE--GASIPTVAFVNSQALSAGAYLALYADQI 118

Query: 122 VAAETSLVGSIGVL 135
                + +G+  V+
Sbjct: 119 YMTPNASMGAAAVI 132


>gi|322385045|ref|ZP_08058695.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           cristatus ATCC 51100]
 gi|321270955|gb|EFX53865.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           cristatus ATCC 51100]
          Length = 202

 Score = 38.1 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 59/192 (30%), Gaps = 31/192 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   DS   + + +++PGGS  AG AI   +  +K+  
Sbjct: 33  IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +  
Sbjct: 93  QTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 150

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      +     ++++++     ++    ++   W +  
Sbjct: 151 --------------------------KTRRTLEQILADNSGKSVEQIHADAERDYWMSAQ 184

Query: 217 EAKKVGLIDVVG 228
           E  + G ID + 
Sbjct: 185 ETLEYGFIDEIM 196


>gi|238503846|ref|XP_002383155.1| sulfate transporter family protein [Aspergillus flavus NRRL3357]
 gi|220690626|gb|EED46975.1| sulfate transporter family protein [Aspergillus flavus NRRL3357]
          Length = 840

 Score = 38.1 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 46/154 (29%), Gaps = 3/154 (1%)

Query: 45  GQIEDSQELIERI--ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102
           G I D +  +  +  E          +I+  S   G  ++    F  I ++  ++ V+  
Sbjct: 527 GTIVDVENTMRGLIEEEAFNKRPIRFIILDFSRVYGIDFSAAEAFTRINRILRKRNVLMT 586

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGVSIKSVKSSPMK 161
           +  +        S  +  +  +E  +                +L       +++      
Sbjct: 587 ISGLNTGGDVGRSLQNVGLFESENGVQIFEDFNSALEFCENDYLKVFYSHREALLKRKDT 646

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
           +        +     + + +V S  H  ++  + 
Sbjct: 647 SSTFLEVPGSHTQHHLHESIVSSPRHRHLQQAAT 680


>gi|83764769|dbj|BAE54913.1| unnamed protein product [Aspergillus oryzae]
          Length = 1072

 Score = 38.1 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 46/154 (29%), Gaps = 3/154 (1%)

Query: 45  GQIEDSQELIERI--ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102
           G I D +  +  +  E          +I+  S   G  ++    F  I ++  ++ V+  
Sbjct: 752 GTIVDVENTMRGLIEEEAFNKRPIRFIILDFSRVYGIDFSAAEAFTRINRILRKRNVLMT 811

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGVSIKSVKSSPMK 161
           +  +        S  +  +  +E  +                +L       +++      
Sbjct: 812 ISGLNTGGDVGRSLQNVGLFESENGVQIFEDFNSALEFCENDYLKVFYSHREALLKRKDT 871

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
           +        +     + + +V S  H  ++  + 
Sbjct: 872 SSTFLEVPGSHTQHHLHESIVSSPRHRHLQQAAT 905


>gi|331268128|ref|YP_004347777.1| ATP-dependent Clp protease proteolytic subunit [Chlorella
           variabilis]
 gi|325296305|gb|ADZ05025.1| ATP-dependent Clp protease proteolytic subunit [Chlorella
           variabilis]
          Length = 201

 Score = 37.7 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 56/179 (31%), Gaps = 29/179 (16%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           + +LI  +  ++ ++    L + ++SPGGS   G A++ A+  +K+    I      + +
Sbjct: 44  ANQLIGIMLYLNAEEQNKGLYIYINSPGGSVTCGIAVYDAMNYIKSEVTTICVGTAASMA 103

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           +  L        +A   S +                                      SE
Sbjct: 104 SFILAGGDRGKRIALPHSRIMIHQPEG---------------------GSQGQASEVLSE 142

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
                    Q     S      L   SR++  D+          +  EAK  GL+D V 
Sbjct: 143 SEEVMRIRRQVGRIYSERTGQALSRISRDMDRDQ--------FLSAREAKDYGLVDQVA 193


>gi|325690442|gb|EGD32445.1| peptidase s14, clpp [Streptococcus sanguinis SK115]
          Length = 227

 Score = 37.7 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/196 (10%), Positives = 59/196 (30%), Gaps = 37/196 (18%)

Query: 40  RIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95
            + + G I        ++  +I +      +  L + ++SPGG  +A   I+  +   K+
Sbjct: 15  VLHLNGTIASESWVDDDVTPQIFKNELMSGSGPLTLWINSPGGDVFAAAQIYNMLMDYKD 74

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
              V  +    +A++   ++  +  +      ++                     +  +V
Sbjct: 75  DVTVNIDGIAASAASVIAMAGTTVNMSPVAMMMIH--------------------NPMTV 114

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-T 214
                K      + ++                  +       ++   +   L D   W  
Sbjct: 115 AIGDSKEMERAIAMLSE------------VKESILNAYEIKTSLSRVQLSHLMDAESWFN 162

Query: 215 GAEAKKVGLIDVVGGQ 230
             +A ++G  D +  +
Sbjct: 163 AKKALELGFADSILYE 178


>gi|308172739|ref|YP_003919444.1| ATP-dependent Clp protease proteolytic subunit Endopeptidase Clp
           [Bacillus amyloliquefaciens DSM 7]
 gi|307605603|emb|CBI41974.1| ATP-dependent Clp protease proteolytic subunit Endopeptidase Clp
           [Bacillus amyloliquefaciens DSM 7]
          Length = 240

 Score = 37.7 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 50/168 (29%), Gaps = 31/168 (18%)

Query: 69  LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
           L V ++SPGGS + G AI   +++   +  V   +  +AAS   +I+ A + I     ++
Sbjct: 59  LNVHINSPGGSVFEGVAICSMLKQH--KAFVNVYIDGLAASIASVIAMAGDAIFMPSNAM 116

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
           +                                         N    Q       S    
Sbjct: 117 MMVHN----------------------------PWTIAMGNANEMRKQADVLDKISESMK 148

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQ 235
              L      +  +    L D   W + +EA   GL D +    +   
Sbjct: 149 ASYLEKAGDKLTKETLDSLMDNETWLSASEAVSYGLADEITAANQAAA 196


>gi|76818292|ref|YP_337327.1| nodulation efficiency protein D [Burkholderia pseudomallei 1710b]
 gi|76582765|gb|ABA52239.1| nodulation efficiency protein D [Burkholderia pseudomallei 1710b]
          Length = 560

 Score = 37.7 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 71/230 (30%), Gaps = 14/230 (6%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSL 73
            L+ L +   + +         +  I + G I    +  ++  +ER +R+ +  A++  L
Sbjct: 83  VLIGLLLACAAVAGAAAAARAPIVVIPVAGAIGPASADFVVRGLERAAREHAPLAIV-QL 141

Query: 74  SSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
            +PGG   +   I +AI          +      AASAG  I  AS++   A  + +G+ 
Sbjct: 142 DTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARAASAGTYIVYASHVAAMAPGTNLGAA 201

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
             +      +                   A  +  +          +  +  +  +   L
Sbjct: 202 SPVQLGIGGQAPAGGRREP--------AGAPGAAGAGATDTESIETRKALHDAAAYIRGL 253

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
                         + +       +A    ++D++    +       L  
Sbjct: 254 AQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLAN--DPADLAAKLDG 301


>gi|304403951|ref|ZP_07385613.1| protein of unknown function DUF107 [Paenibacillus curdlanolyticus
           YK9]
 gi|304346929|gb|EFM12761.1| protein of unknown function DUF107 [Paenibacillus curdlanolyticus
           YK9]
          Length = 468

 Score = 37.7 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 58/220 (26%), Gaps = 21/220 (9%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQI-EDSQELIERIERISRDDSATALIVSLSSPGG 78
              V  +           V  I  +  +    Q  +ER  + + +  A  +++ L++ GG
Sbjct: 31  FQSVALAEMKPAPAAGGAVYVIHAKQTVQAGLQSFLERAYKEAEEARAERIVLVLNTYGG 90

Query: 79  SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
              + E I   I+                         A   I      +V   G     
Sbjct: 91  RLDSAEEIGGLIKA---------SKVPTTVFVEGKAVSAGTYIALNAEQIVMQPGSTIGA 141

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
             V     +L  + K+V                            +  +  ++L +  R 
Sbjct: 142 AAVVDGSGELVDNPKTVSF----WTSEMMEAARLHGRDPNYAAAMTDVNAEIKLTAIGRT 197

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSL 237
                          T +EA K G  + +    +E  + L
Sbjct: 198 KERGDI------LTLTASEALKAGYAEHLAANVDETLKWL 231


>gi|108796955|ref|YP_636255.1| ATP-dependent Clp protease proteolytic subunit [Pseudendoclonium
           akinetum]
 gi|122217843|sp|Q3ZJ12|CLPP_PSEAK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56159653|gb|AAV80677.1| proteolytic subunit 2 of clp protease [Pseudendoclonium akinetum]
          Length = 198

 Score = 37.7 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 59/182 (32%), Gaps = 31/182 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           + +LI  +  ++ +D +  + V ++SPGGS   G  +F A+  +K+    I      + +
Sbjct: 44  ANQLIGIMLYLNAEDKSKGIYVYINSPGGSVTCGVGVFDAMNYIKSDVTTICVGTAASMA 103

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           +  L        +A   S                           +      ++      
Sbjct: 104 SFVLAGGRKGKRLALPHS------------------------RIMIHQPEGGSQGQASVV 139

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVG 228
           ++          V        ++ SE      ++    ++  +  +  EAK  GL+D + 
Sbjct: 140 LSESE------EVLRIRDEVAQIYSERTGQTLERISRDMNRDQFMSAREAKDYGLVDQIA 193

Query: 229 GQ 230
             
Sbjct: 194 SS 195


>gi|304320235|ref|YP_003853878.1| hypothetical protein PB2503_03302 [Parvularcula bermudensis
           HTCC2503]
 gi|303299137|gb|ADM08736.1| hypothetical protein PB2503_03302 [Parvularcula bermudensis
           HTCC2503]
          Length = 354

 Score = 37.7 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 72/251 (28%), Gaps = 26/251 (10%)

Query: 20  LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79
           +  +            P +  I +     D+++++  I       + T L + L +PGG 
Sbjct: 61  IIAIVHRQEPMGLLGIPQLRYIDLN----DAEDVLNAIR---STPAGTPLEIILHTPGGL 113

Query: 80  AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
                 I RAI+     K  +   H   +    +   A NII+     L      +   P
Sbjct: 114 VLPALQIARAIKAHAGPK-TVFVPHYAMSGGTLIALAADNIILNDHAVLGPIDPQIGGLP 172

Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199
                      S  +++                        +  +        ++E    
Sbjct: 173 AASIAHVTETKSPDTIEDFTWVLADVARKAQQQLERAAKDLLSGTVSPNAAHAIAE---- 228

Query: 200 PYDKTLVLSDGRIWT------GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
                  LS GR WT       AEA+++GL        E   +L  L  D+  ++   + 
Sbjct: 229 ------ELSSGR-WTHDYPIDAAEAREIGL-HTSTEMPEEIAALMELFPDKLSKQSVSYT 280

Query: 254 PPKNYWFCDLK 264
                      
Sbjct: 281 QEPTLLTRLFG 291


>gi|27904898|ref|NP_778024.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
 gi|31076632|sp|Q89AA1|CLPP_BUCBP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|27904296|gb|AAO27129.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
          Length = 205

 Score = 37.7 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 60/194 (30%), Gaps = 31/194 (15%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D+    ++ ++  +  +++   + + ++SPGG   AG +I+  ++ +K   
Sbjct: 40  IIFLTGTIDDNTANLIVAQMLFLEAENAKQDIYIYINSPGGVITAGMSIYDTMKFIKPNV 99

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L +           S +     +  Y      ++     I  VK 
Sbjct: 100 NTICIGQACSMAALILTAGKKGYRYCLPNSRIMIHQPIGGYNGQASDIEIHAKEIIKVKR 159

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                                     +S           R+               +  +
Sbjct: 160 -----------------KLNELMAFHTSQSINTIEKDTERDC------------FLSANQ 190

Query: 218 AKKVGLIDVVGGQE 231
           A K GLID +    
Sbjct: 191 AIKYGLIDTILSYR 204


>gi|242373839|ref|ZP_04819413.1| glycine dehydrogenase subunit 1 [Staphylococcus epidermidis
           M23864:W1]
 gi|242348393|gb|EES39995.1| glycine dehydrogenase subunit 1 [Staphylococcus epidermidis
           M23864:W1]
          Length = 448

 Score = 37.7 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 38  VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
           V  I + G I D    +E++E+   DD+A A+ V   +  GS    E I   I+    +K
Sbjct: 184 VVEIDLDGTITD----LEKLEQAVDDDTA-AVAVQYPNFYGSIEDLEKINNFIKD---KK 235

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETS 127
            +        A        A    +    +
Sbjct: 236 ALFIVYANPLALGLLTPPGAFGADIVVGDT 265


>gi|47027426|gb|AAT08790.1| capsid protein [Wolbachia phage WO]
          Length = 92

 Score = 37.7 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              V+L++ +R +  +K      G  + G +A ++GL D V    E   
Sbjct: 1   EMLVQLIARNRGLSIEKVRSTEAGLYF-GEKAVEIGLADGVTTFFEFIN 48


>gi|6723207|dbj|BAA89612.1| capsid protein [Bacteriophage WO]
          Length = 123

 Score = 37.7 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Y  FV+L++ +R +  +K      G  + G +A ++GL D V    E    
Sbjct: 13  YEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFINK 62


>gi|228990018|ref|ZP_04149991.1| hypothetical protein bpmyx0001_7840 [Bacillus pseudomycoides DSM
          12442]
 gi|229002596|ref|ZP_04160643.1| hypothetical protein bmyco0003_56840 [Bacillus mycoides Rock3-17]
 gi|229003819|ref|ZP_04161628.1| hypothetical protein bmyco0002_7890 [Bacillus mycoides Rock1-4]
 gi|228757420|gb|EEM06656.1| hypothetical protein bmyco0002_7890 [Bacillus mycoides Rock1-4]
 gi|228758523|gb|EEM07663.1| hypothetical protein bmyco0003_56840 [Bacillus mycoides Rock3-17]
 gi|228769684|gb|EEM18274.1| hypothetical protein bpmyx0001_7840 [Bacillus pseudomycoides DSM
          12442]
          Length = 312

 Score = 37.7 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 5  LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64
          +KK+    +++ +V +  +++  +    D    +     +G   DS ++   I +  +D+
Sbjct: 6  MKKMIG--LIVGIVLIIFLFYYQNHSNSDRKEKIYVEDFKGT-NDSDKIQSAINKA-KDN 61

Query: 65 SATALIVS 72
              +++ 
Sbjct: 62 KIKTVLLD 69


>gi|47027410|gb|AAT08783.1| capsid protein [Wolbachia phage WO]
          Length = 91

 Score = 37.7 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
              V+L++ +RN+          G  + G +A ++GL D V    E   +  +  V  + 
Sbjct: 1   EMLVQLIARNRNLSIQAIKSTEAGLYF-GEKAVEIGLADGVTTFFEFINNHKSRSVSMTT 59

Query: 247 RKIKDWNPPKNYWF 260
            ++ + N  +    
Sbjct: 60  DELIEENYRREILE 73


>gi|11498462|ref|NP_069690.1| hypothetical protein AF0856 [Archaeoglobus fulgidus DSM 4304]
 gi|2649747|gb|AAB90383.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 291

 Score = 37.7 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 4/149 (2%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           I+DS++++  I    +D     +I    +PGG   A   I +A+     +  VI   + M
Sbjct: 81  IDDSEKVLRAIRSTPKDKPIDLII---HTPGGLVLAATQIAKALHDHPAKTTVIVPHYAM 137

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            +    +   A  I++     L      L  YP             K +    +      
Sbjct: 138 -SGGTLIALAADEILIDPHAVLGPVDPQLMNYPAPSILKVVEKKEPKDIDDKTLIMADIA 196

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
              +N     +   + D       R V++
Sbjct: 197 EKAINQVRETVFNLLKDKMDEEKAREVAK 225


>gi|163781838|ref|ZP_02176838.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883058|gb|EDP76562.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 201

 Score = 37.7 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 57/176 (32%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +   D    + + ++SPGGS  AG A++  +Q +K     I      +  A  
Sbjct: 51  IVAQLLFLESQDPDKDIYLYINSPGGSVTAGMAVYDTMQYIKPDVVTICIGQAASMGAVL 110

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L + A     A   S +     L               +   + +  +K      +E+  
Sbjct: 111 LAAGAKGKRYALPHSRIMIHQPLGGIQG--------QATDIIIHAEEIKRIKRMLNEI-- 160

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVV 227
                               +++      +K    +      +  EAK  G+ID V
Sbjct: 161 --------------------LAKHTGQDLEKIEKDVERDYFMSAEEAKDYGVIDKV 196


>gi|9626249|ref|NP_040585.1| capsid assembly protein [Enterobacteria phage lambda]
 gi|215110|gb|AAA96538.1| nu3 (capsid assembly;201) [Enterobacteria phage lambda]
 gi|242376544|emb|CAQ31252.1| enterobacteria phage lambda, capsid assembly protein [Escherichia
           coli BL21(DE3)]
          Length = 201

 Score = 37.7 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 2/100 (2%)

Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           +D++   F + VS    +     L   +  +++G EA   GL D +    +    +    
Sbjct: 1   MDATRQMFAQKVSAYTGLSVQVVLDT-EAAVYSGQEAIDAGLADELVNSTDAITVMRD-A 58

Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
           +D    ++      K      +   +  + + D +P  + 
Sbjct: 59  LDARKSRLSGGRMTKETQSTTVSATASQADVTDVVPATEG 98


>gi|42527889|ref|NP_972987.1| ATP-dependent Clp protease proteolytic subunit [Treponema denticola
           ATCC 35405]
 gi|67460503|sp|Q73JM9|CLPP2_TREDE RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|41818934|gb|AAS12906.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
           denticola ATCC 35405]
 gi|325474892|gb|EGC78078.1| ATP-dependent Clp protease proteolytic subunit 2 [Treponema
           denticola F0402]
          Length = 200

 Score = 37.7 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 62/170 (36%), Gaps = 7/170 (4%)

Query: 41  IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
           I + G+I    S++++ ++  +    +   + + + SPGG A AG AIF  I+ +K    
Sbjct: 31  IILAGEINKELSEKIVRQLLLMESLSATKPIYIYIDSPGGDADAGFAIFDMIRFIKAPVY 90

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            I      +A++  L++ +         S       L     V   ++     ++ ++  
Sbjct: 91  TIGMGLVASAASIILLAASKERRFGMPNSHYLIHQPLSGIKGVATEIEIHAKELEKMRVK 150

Query: 159 PMK-----AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
             K                       +  +S  +  +  ++++R    +K
Sbjct: 151 INKLIAEETGTDEKKVAKDTDRDCWLNAKESVEYGLISKIAKNRKDIPEK 200


>gi|107025759|ref|YP_623270.1| hypothetical protein Bcen_3402 [Burkholderia cenocepacia AU 1054]
 gi|116693059|ref|YP_838592.1| hypothetical protein Bcen2424_4965 [Burkholderia cenocepacia
           HI2424]
 gi|105895133|gb|ABF78297.1| protein of unknown function DUF107 [Burkholderia cenocepacia AU
           1054]
 gi|116651059|gb|ABK11699.1| protein of unknown function DUF107 [Burkholderia cenocepacia
           HI2424]
          Length = 519

 Score = 37.7 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 71/211 (33%), Gaps = 9/211 (4%)

Query: 40  RIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NR 96
            I + G I    +  ++  ++R +R+ +  A+ + L +PGG   +   I +AI       
Sbjct: 59  VIPVNGAIGPASADFIVRSLDRAAREHAPLAI-LQLDTPGGLDTSMRQIIKAILGSPVPV 117

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
              +      AASAG  I  AS++   A  + +G+   +               + +   
Sbjct: 118 AAFVAPGGARAASAGTYIVYASHVAAMAPGTNLGAASPVQFGIGGGAPPGANPGAPRPTG 177

Query: 157 SSPMKAEPSPFSE----VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
           +S               +       ++  +  +  +   L              + +   
Sbjct: 178 ASGASGASGVSDAAAMLLTDTQSTEIRKAMQDASAYIRGLAQLRGRNAEWAERAVREAVS 237

Query: 213 WTGAEAKKVGLIDVVG-GQEEVWQSLYALGV 242
            +  EA+   ++D++     ++ + L    V
Sbjct: 238 LSANEARAQHVVDLIAQDPADLARQLDGRAV 268


>gi|327461145|gb|EGF07478.1| peptidase s14, clpp [Streptococcus sanguinis SK1057]
          Length = 227

 Score = 37.7 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/196 (10%), Positives = 59/196 (30%), Gaps = 37/196 (18%)

Query: 40  RIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95
            + + G I        ++  +I +      +  L + ++SPGG  +A   I+  +   K+
Sbjct: 15  VLHLNGTIASESWVDDDVTPQIFKNELMSGSGPLTLWINSPGGDVFAAAQIYNMLMDYKD 74

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
              V  +    +A++   ++  +  +      ++                     +  +V
Sbjct: 75  DVTVNIDGIAASAASVIAMAGTTVNMSPVAMMMIH--------------------NPMTV 114

Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-T 214
                K      + ++                  +       ++   +   L D   W  
Sbjct: 115 AIGDSKEMEKAIAMLSE------------VKESILNAYEIKTSLSRVQLSHLMDAESWFN 162

Query: 215 GAEAKKVGLIDVVGGQ 230
             +A ++G  D +  +
Sbjct: 163 AKKALELGFADSILYE 178


>gi|239616994|ref|YP_002940316.1| protein of unknown function DUF114 [Kosmotoga olearia TBF 19.5.1]
 gi|239505825|gb|ACR79312.1| protein of unknown function DUF114 [Kosmotoga olearia TBF 19.5.1]
          Length = 280

 Score = 37.7 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+E++  I+    D     +I    +PGG   A E I RA++K    K  +   H  
Sbjct: 72  IEDSEEVLRAIKMTPDDMPIDFII---HTPGGLVLAAEQIARALKKH-KGKVTVFVPHYA 127

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
            +    +   A  I++     L      + QYP   
Sbjct: 128 MSGGTLIAIAADEIVMDENAVLGPLDPQIGQYPAAS 163


>gi|166368460|ref|YP_001660733.1| ATP-dependent Clp protease-like protein [Microcystis aeruginosa
           NIES-843]
 gi|159028169|emb|CAO89776.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
 gi|166090833|dbj|BAG05541.1| ATP-dependent Clp protease proteolytic subunit [Microcystis
           aeruginosa NIES-843]
          Length = 228

 Score = 37.7 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 59/176 (33%), Gaps = 22/176 (12%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +I ++  +  DD    +   ++S G S Y G+AI    +        +  +     +   
Sbjct: 59  IIAQLLYLQFDDPEKPIFFYINSTGTSWYTGDAIGYETEAF-AICDTLNYIKPPVHTICI 117

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
             +  +  ++ +  +     G     P+    L++     +                   
Sbjct: 118 GQAMGTAAMILSAGT----KGFRASLPHATIVLNQNRTGAQG----------------QA 157

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
             +Q+    V ++    + + S++     +K     D   + T  +AK  GLID V
Sbjct: 158 TDIQIRAKEVIANKQTMLEIFSKNTGQTTEKLAKDMDRTFYLTPQQAKDYGLIDRV 213


>gi|319939551|ref|ZP_08013911.1| hypothetical protein HMPREF9459_00899 [Streptococcus anginosus
           1_2_62CV]
 gi|319811537|gb|EFW07832.1| hypothetical protein HMPREF9459_00899 [Streptococcus anginosus
           1_2_62CV]
          Length = 227

 Score = 37.7 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 11/181 (6%)

Query: 41  IAIRGQIEDSQELIE---------RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
           I I+G I     ++E          +E I     +  L V ++S GG  Y    I+  ++
Sbjct: 4   IEIKGVIIPKSSILEYKKDGREYTSLEDIKIPFPSEPLEVRINSSGGDVYTANEIYAKLR 63

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
             K +  V      +AASA  +I+ A ++I     +L+    V          L +   +
Sbjct: 64  GHKGKVTVKIVG--LAASAASVIAMAGDVIEMNPIALMMIHNVSTLTYGNSQQLKRQIET 121

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
           +     +   A          K  +MM+     S    + L    + +           R
Sbjct: 122 MDVANDALATAYQERTGLAKEKIKEMMERETWLSCDTAISLGFADKKMFVKDIDTTMVKR 181

Query: 212 I 212
           I
Sbjct: 182 I 182


>gi|332283232|ref|YP_004418917.1| peptidase S14 [Pusillimonas sp. T7-7]
 gi|330430960|gb|AEC22293.1| peptidase S14 [Pusillimonas sp. T7-7]
          Length = 240

 Score = 37.7 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 58/195 (29%), Gaps = 43/195 (22%)

Query: 39  ARIAIRGQI------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
           A I + G I       D  E  + +  I  D     + + + SPGG  +A  A+  AI +
Sbjct: 29  ATIYLHGVIGGWWGDIDETEFAKTLAGIDADT----IHLRIDSPGGDVFAARAMMTAISQ 84

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
            K +  VI  V  +AASA   I  A + +   + +                         
Sbjct: 85  HKAK--VIAHVDGLAASAATGICMACDEVEITQGAGFMIHN------------------A 124

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
            ++              +      +  D             ++      ++     D   
Sbjct: 125 WTIAIGNKADMGKTSELLGKIDAGLSDDY------------AKRTGQKSEQITSWMDEET 172

Query: 213 W-TGAEAKKVGLIDV 226
           W T  EA + G  D 
Sbjct: 173 WFTADEAVEHGFADR 187


>gi|260892139|ref|YP_003238236.1| protein of unknown function DUF114 [Ammonifex degensii KC4]
 gi|260864280|gb|ACX51386.1| protein of unknown function DUF114 [Ammonifex degensii KC4]
          Length = 278

 Score = 37.7 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS++++  I     D     +++   +PGG   A E I RA++K    K  +   H  
Sbjct: 69  IEDSEQILRAIRYTPPDMPID-ILLH--TPGGLVLAAEQIARALRKHPA-KVTVFVPHYA 124

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            +    +   A  I++     L      L  YP            I  V  + M      
Sbjct: 125 MSGGTMIALAADEIVMDENAVLGPVDPQLGNYPAASILEVVRQKGIDKVDDTTMILADIS 184

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
              V      +   + +         V+  
Sbjct: 185 RKAVRQVEEFVFSLLREKMPEEKALAVARY 214


>gi|303257392|ref|ZP_07343405.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Burkholderiales bacterium 1_1_47]
 gi|302859749|gb|EFL82827.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Burkholderiales bacterium 1_1_47]
          Length = 209

 Score = 37.7 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G + D     ++ ++  +  ++    + + + SPGGS YAG +I+  +Q +K   
Sbjct: 37  VVFLVGPVTDQSANLVVAQLLFLESENPDKDISLYIDSPGGSVYAGLSIYDTMQFIKPDV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   S +                            
Sbjct: 97  STICLGMAASMGAFLLAAGAKGKRFALPNSRIMIHQPSGGTNG----------------- 139

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            +++    +         ++SE      +K           + A
Sbjct: 140 -------------TAADIEIQAKEILELRSRLNTILSEHTGQSIEKIAVDTERDNFMSSA 186

Query: 217 EAKKVGLIDVV 227
           +A + G+ID V
Sbjct: 187 QAVEYGIIDGV 197


>gi|331001370|ref|ZP_08324994.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Parasutterella excrementihominis YIT 11859]
 gi|329568629|gb|EGG50431.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Parasutterella excrementihominis YIT 11859]
          Length = 209

 Score = 37.7 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G + D     ++ ++  +  ++    + + + SPGGS YAG +I+  +Q +K   
Sbjct: 37  VVFLVGPVTDQSANLVVAQLLFLESENPDKDISLYIDSPGGSVYAGLSIYDTMQFIKPDV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L + A     A   S +                            
Sbjct: 97  STICLGMAASMGAFLLAAGAKGKRFALPNSRIMIHQPSGGTNG----------------- 139

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            +++    +         ++SE      +K           + A
Sbjct: 140 -------------TAADIEIQAKEILELRSRLNTILSEHTGQSIEKIAVDTERDNFMSSA 186

Query: 217 EAKKVGLIDVV 227
           +A + G+ID V
Sbjct: 187 QAVEYGIIDGV 197


>gi|302423756|ref|XP_003009708.1| enoyl-CoA hydratase/isomerase family protein [Verticillium
           albo-atrum VaMs.102]
 gi|261352854|gb|EEY15282.1| enoyl-CoA hydratase/isomerase family protein [Verticillium
           albo-atrum VaMs.102]
          Length = 276

 Score = 37.7 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 44/172 (25%), Gaps = 19/172 (11%)

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
           I+  S P G      AI                       A       ++ +      L+
Sbjct: 57  IIEFSHPVGVVVTTSAI-----------TKFYSNGLDLDHAFTTPGFWTDSLYKLYHRLL 105

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189
                         F      ++        +        +    ++    +  +    F
Sbjct: 106 TYPMPTVSLIPGHAFAGGFMTAMH----HDYRVMNPSKGFLCMNELEFGAPLKPAMSSIF 161

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
               +  R        ++ + + + G  A + GL+D +GG +E  + +    
Sbjct: 162 RLKCTSPRIYQ----EIVLEAKRFPGPAALEAGLVDALGGLDEALKLIADRK 209


>gi|327400327|ref|YP_004341166.1| hypothetical protein Arcve_0419 [Archaeoglobus veneficus SNP6]
 gi|327315835|gb|AEA46451.1| protein of unknown function DUF114 [Archaeoglobus veneficus SNP6]
          Length = 289

 Score = 37.7 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 58/177 (32%), Gaps = 9/177 (5%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           +EDS++++  I R  +D     +I    +PGG   A   I +AI+    +  VI   + M
Sbjct: 73  VEDSEQILRAIRRTPKDQPIDLII---HTPGGLVLAATQIAKAIKAHPAKTTVIVPHYAM 129

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            +    +   A  II+     L      L  YP             K +    +      
Sbjct: 130 -SGGTLIALAADEIIMDPNAVLGPVDPQLMNYPAPSILKAISKKDPKDIDDQTLIMADIA 188

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
              +      + + + D       + V+             +     T   AK++GL
Sbjct: 189 EKAIKQVRDFVFELLKDRLGEEKAKEVA-----TVLTEGRWTHDYPITVEVAKQLGL 240


>gi|156541196|ref|XP_001599209.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 234

 Score = 37.7 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D     ++ ++  +  + S   + + ++SPGG   AG  I+  +Q V    
Sbjct: 51  IICLMGPITDDISSLVVAQLLFLQSESSKKPIHLYINSPGGVVTAGLGIYDTMQYVLPPV 110

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                    + ++  L + A  +  A   + +                            
Sbjct: 111 ATWCVGQACSMASLLLAAGAPGMRHALPNARIMIHQPSGGVQGQ---------------- 154

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                            +++  + +         L ++   +   +    +   +  T  
Sbjct: 155 --------------ATDIRIQAEEILKLKGQINALYAKHTGLDIQRIENNMERDKFMTPI 200

Query: 217 EAKKVGLIDVV 227
           EAK+ G+ID V
Sbjct: 201 EAKEFGIIDKV 211


>gi|51473702|ref|YP_067459.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia typhi
           str. Wilmington]
 gi|60389549|sp|Q68WL5|CLPP_RICTY RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|51460014|gb|AAU03977.1| Caseinolytic protease [Rickettsia typhi str. Wilmington]
          Length = 201

 Score = 37.7 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/187 (11%), Positives = 60/187 (32%), Gaps = 29/187 (15%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  ++    + + ++SPGG   AG AI+  +Q +K +   +      +  +  
Sbjct: 44  IVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQFIKPKVATLCIGQACSMGSLL 103

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L      +  +   S +                                 +    +    
Sbjct: 104 LCGGEHGMRYSLPHSRIMIHQPSG-------------------GYKGQATDIEIHARETL 144

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
           K  +++ ++        ++ + +S          +      +  EAKK GL+D +    +
Sbjct: 145 KIKKLLNELYSKHTEQALKHIEKS----------MERDNFMSPGEAKKFGLVDNIISSRD 194

Query: 233 VWQSLYA 239
               L+ 
Sbjct: 195 AMALLHK 201


>gi|289577854|ref|YP_003476481.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermoanaerobacter italicus Ab9]
 gi|297544142|ref|YP_003676444.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289527567|gb|ADD01919.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter italicus Ab9]
 gi|296841917|gb|ADH60433.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 195

 Score = 37.7 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 66/191 (34%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + +  +I D+    +I ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPGGSITAGFAIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      + +A  L + A     A   S +     L     +      + +  + +  
Sbjct: 89  VTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLG---GMHGQATDIKIHAERILK 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
              K +                              +E+   P +K    ++   +    
Sbjct: 146 LRDKLDRIL---------------------------AENTGQPIEKIKADTERDFFMDAE 178

Query: 217 EAKKVGLIDVV 227
           +AK  G+ID V
Sbjct: 179 DAKAYGIIDEV 189


>gi|288958758|ref|YP_003449099.1| ATP-dependent Clp protease, protease subunit [Azospirillum sp.
           B510]
 gi|288911066|dbj|BAI72555.1| ATP-dependent Clp protease, protease subunit [Azospirillum sp.
           B510]
          Length = 208

 Score = 37.7 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 57/191 (29%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D+    +  ++  +  ++    + + ++SPGG   AG AI+  +Q ++ + 
Sbjct: 37  IIFLIGGVNDAVASLICSQLLFLESENPNKDIALYINSPGGYVSAGLAIYDTMQYIRPQV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  +  L + A     +   S +               ++           
Sbjct: 97  STVCMGQAASMGSLLLAAGAPGKRFSLPNSRIMIHQPSGGAQGQASDIE----------- 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                              +    +         +  +      D     +   +  +  
Sbjct: 146 -------------------IQAQEILKLRSRLNDIYVKHTGQDLDTIETAMERDKFMSPE 186

Query: 217 EAKKVGLIDVV 227
           EAK  GLID V
Sbjct: 187 EAKAFGLIDEV 197


>gi|302523127|ref|ZP_07275469.1| enoyl-CoA hydratase/isomerase [Streptomyces sp. SPB78]
 gi|302432022|gb|EFL03838.1| enoyl-CoA hydratase/isomerase [Streptomyces sp. SPB78]
          Length = 222

 Score = 37.7 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254
            SR  P      ++ GR +   EA   GL+D V   +EV           + + +    P
Sbjct: 144 RSRLTPATAHEAMTTGRRYPAPEALASGLVDAVAAVDEVVTEAVTRARTLAPKSV----P 199

Query: 255 PKNYWFCDLKNLSISSL 271
            +      L   ++++L
Sbjct: 200 VRAEIKEGLYAEALAAL 216


>gi|290579971|ref|YP_003484363.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus mutans NN2025]
 gi|254996870|dbj|BAH87471.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus mutans NN2025]
          Length = 196

 Score = 37.7 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 47/155 (30%), Gaps = 2/155 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + ++SPGGS  AG AI   +  +K+  
Sbjct: 27  IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYINSPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    + + +K+
Sbjct: 87  QTIVMGIAASMGTIIASSGAKGKRFMLPNAEYLIHQPMGGTGGGTQQSDMAIAAEQLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                +    +              D        L
Sbjct: 147 RKKLEKILSDNSGKTVKQIHKDAERDYWMDAKETL 181


>gi|225850859|ref|YP_002731093.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Persephonella
           marina EX-H1]
 gi|225644930|gb|ACO03116.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Persephonella
           marina EX-H1]
          Length = 202

 Score = 37.7 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 61/187 (32%), Gaps = 33/187 (17%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            I   I +   +I ++  +  +D    + + ++SPGG   +G AI+  ++ +K     I 
Sbjct: 44  PIDDHIANL--IIAQLLFLESEDPEKDIYMYINSPGGVVTSGLAIYDTMRYIKPDVVTIC 101

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                +  A  L + A     A  +S +     L  +      ++               
Sbjct: 102 MGQAASMGAFLLSAGAKGKRYALPSSRIMIHQPLGGFQGQATDIEIHAKE---------- 151

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220
                               +     +    ++E    P +K    ++   + +  +A +
Sbjct: 152 --------------------ILRLKKYLNERLAEHTGQPLEKIERDTERDFFMSAHDAVE 191

Query: 221 VGLIDVV 227
            GLID V
Sbjct: 192 YGLIDKV 198


>gi|326796767|ref|YP_004314587.1| carboxyl-terminal protease [Marinomonas mediterranea MMB-1]
 gi|326547531|gb|ADZ92751.1| carboxyl-terminal protease [Marinomonas mediterranea MMB-1]
          Length = 423

 Score = 37.7 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 25  FSWSSHVEDNSPHVARIAIRGQIEDS-QELIERIERISRDDSATALIVSLSSPGGSAYAG 83
            S +S   D    +A I +     DS +E    I+++ +D     +I+ L +  G     
Sbjct: 178 SSITSKWLDKDDGIAYIRLSQFQGDSGEEFASAIKQLKQDQPIEGVILDLRNNPGGVLQS 237


>gi|317138452|ref|XP_001816915.2| sulfate transporter family protein [Aspergillus oryzae RIB40]
          Length = 1036

 Score = 37.7 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 46/154 (29%), Gaps = 3/154 (1%)

Query: 45  GQIEDSQELIERI--ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102
           G I D +  +  +  E          +I+  S   G  ++    F  I ++  ++ V+  
Sbjct: 716 GTIVDVENTMRGLIEEEAFNKRPIRFIILDFSRVYGIDFSAAEAFTRINRILRKRNVLMT 775

Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGVSIKSVKSSPMK 161
           +  +        S  +  +  +E  +                +L       +++      
Sbjct: 776 ISGLNTGGDVGRSLQNVGLFESENGVQIFEDFNSALEFCENDYLKVFYSHREALLKRKDT 835

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
           +        +     + + +V S  H  ++  + 
Sbjct: 836 SSTFLEVPGSHTQHHLHESIVSSPRHRHLQQAAT 869


>gi|296051584|ref|YP_003632258.1| peptidase S14 ClpP [Planctomyces limnophilus DSM 3776]
 gi|296016821|gb|ADG70059.1| peptidase S14 ClpP [Planctomyces limnophilus DSM 3776]
          Length = 179

 Score = 37.7 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 52/165 (31%), Gaps = 33/165 (20%)

Query: 64  DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123
              T +++ ++S GG      AI++ +++      V  +   +  S    I+ A + I  
Sbjct: 10  SDVTEVVIRINSVGGYVGEASAIYQLLKEHPANIHVKIDGEAI--SCASWIAMAGDKITI 67

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
           AE  L+                                  PS +       ++   +V+D
Sbjct: 68  AEHGLMMVHD------------------------------PSTWISGTADDLRKEAEVLD 97

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
           S       + +       +    +     W T  +AK  G +D +
Sbjct: 98  SYKEVIAGIYAARSGTDVEDVKKMMSDETWMTATQAKDKGFVDEI 142


>gi|307719554|ref|YP_003875086.1| periplasmic serine protease [Spirochaeta thermophila DSM 6192]
 gi|306533279|gb|ADN02813.1| periplasmic serine protease [Spirochaeta thermophila DSM 6192]
          Length = 284

 Score = 37.7 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 5/106 (4%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           I+DS+ ++  I+    D     ++    +PGG   A E I  A++K   +  V   V   
Sbjct: 67  IDDSEAVLRAIKMTDDDVPIDLIL---HTPGGLVVAAEQIAYALKKHPAK--VTVFVPHY 121

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           A S G LI+ A++ +V  E +++G +            L  L    
Sbjct: 122 AMSGGTLIALAADEVVMDENAVLGPVDPQIGQQPAASILKVLERKP 167


>gi|121534156|ref|ZP_01665981.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosinus
           carboxydivorans Nor1]
 gi|121307259|gb|EAX48176.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosinus
           carboxydivorans Nor1]
          Length = 203

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I G I+D  +  +I ++  +  +D    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 29  IVFIGGPIDDHVANLVIAQLLFLESEDPDKDIHLYINSPGGVVTAGLAIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             I      + +A  L + A     A   + V     L 
Sbjct: 89  STICLGSAASMAAVLLAAGAPGKRYALPYARVMIHQPLG 127


>gi|86357052|ref|YP_468944.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli CFN
           42]
 gi|116243105|sp|Q2KAB9|CLPP1_RHIEC RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|86281154|gb|ABC90217.1| endopeptidase Clp, subunit 1 protein [Rhizobium etli CFN 42]
          Length = 202

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 64/191 (33%), Gaps = 34/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D+    +  ++  +  D     + + ++SPGG+  +G A++  ++ ++   
Sbjct: 33  IIFLNGEVNDTVSALVCAQLLFLEADPE-KPINLYINSPGGAVTSGLAMYDTMRFIRAPV 91

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                         + +   +   + +   + G  G     P     + +     +    
Sbjct: 92  --------------HTLCMGTARSMGSFLLMAGEPGERAALPNASILIHQPSGGFQG--- 134

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +  + +  +     RL +E     Y+     +   R  T  
Sbjct: 135 -------------QASDMLIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAE 181

Query: 217 EAKKVGLIDVV 227
           EA + GLI+ +
Sbjct: 182 EALEWGLIERI 192


>gi|315186644|gb|EFU20403.1| hypothetical protein SpithDRAFT_1037 [Spirochaeta thermophila DSM
           6578]
          Length = 284

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 55/177 (31%), Gaps = 9/177 (5%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           I+DS+ ++  I+    D     ++    +PGG   A E I  A++K    K  +   H  
Sbjct: 67  IDDSEAVLRAIKMTDDDVPIDLIL---HTPGGLVVAAEQIAYALKKHPA-KVTVFVPHYA 122

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            +    +   A  +++     L      + Q P            I  V    +      
Sbjct: 123 MSGGTLIALAADEVVMDENAVLGPVDPQIGQQPAASILKVLERKPIAEVDDETIILADVA 182

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
              +      +   +        V  ++         T   +     T  EA+++GL
Sbjct: 183 EKAIRQVKRVVKTLLEGRLPGDKVEEIATR-----LATGEFTHDYPITVDEARELGL 234


>gi|323139086|ref|ZP_08074144.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylocystis
           sp. ATCC 49242]
 gi|322395650|gb|EFX98193.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylocystis
           sp. ATCC 49242]
          Length = 210

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 56/174 (32%), Gaps = 13/174 (7%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IED  +  +I ++  +  ++    + + ++SPGG   +G AI+  +Q +K + 
Sbjct: 38  IIFVTGPIEDHMASVIIAQLLFLESENPKKEISLYINSPGGVVTSGLAIYDTMQFIKPKV 97

Query: 98  PVITEVHE--------MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
             +              A + G   +  +  ++  + S            + +  L    
Sbjct: 98  STLCVGQAASMGSLLLCAGADGLRYALPNARVMLHQPSGGFQGQASDIQRHAEDILKVKK 157

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
                      K   +    ++           ++     +  V E R     +
Sbjct: 158 RLNDIYVRHTGKDYDTIERTLD---RDHFMSAEEAKSFGIIDSVQEKRAEDETE 208


>gi|322373950|ref|ZP_08048485.1| Clp protease [Streptococcus sp. C150]
 gi|321277322|gb|EFX54392.1| Clp protease [Streptococcus sp. C150]
          Length = 196

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 47/155 (30%), Gaps = 2/155 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 27  IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S           +       +          D    +   +K+
Sbjct: 87  QTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                +    +         +    D+       L
Sbjct: 147 RNNLEQILADNSGQSIEKVHIDAERDNWMSAQETL 181


>gi|300704788|ref|YP_003746391.1| membrane bound peptidase [Ralstonia solanacearum CFBP2957]
 gi|299072452|emb|CBJ43799.1| putative membrane bound peptidase; NefD homolog [Ralstonia
           solanacearum CFBP2957]
          Length = 474

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 65/212 (30%), Gaps = 4/212 (1%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSP 76
               V  +WS  V   +  V  + + G I    +  ++  +E   + +    +++ + +P
Sbjct: 14  LAASVAAAWSGLVLAAAAPVMVLPLTGAIGPASAAYVVHGLELARK-EGMQLVVLQMDTP 72

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GG   +   I +AI                 A++       ++ I A   +         
Sbjct: 73  GGLDASMRQIIQAILASPVPVAGYVAPGGARAASAGTYILYASHIAAMAPATNLGAASPV 132

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                         +  +          S  +  + +     + + D++ +         
Sbjct: 133 AIGIGGHAPAGPTPANPTPTPGDTAKPASAPAASSNEDTLARKQMHDAAAYIRGLAQLRG 192

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
           RN  + +   + +    +  EA    +ID++ 
Sbjct: 193 RNADWAE-RAVREAVSLSADEAATQRVIDLIA 223


>gi|288930477|ref|YP_003434537.1| hypothetical protein Ferp_0072 [Ferroglobus placidus DSM 10642]
 gi|288892725|gb|ADC64262.1| protein of unknown function DUF114 [Ferroglobus placidus DSM 10642]
          Length = 277

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 5/105 (4%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS++++  I    RD     ++    +PGG   A   I +AI+    +  VI   + M
Sbjct: 71  IEDSEQVLRAIRMTPRDTPIDLIL---HTPGGLVLAATQIAKAIKDHPAKTTVIVPHYAM 127

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           +   G LI+ A++ I+    +++G +            L  +   
Sbjct: 128 SG--GTLIAIAADEIIMDPHAVLGPLDPQIMGYPAPSILKAVERK 170


>gi|172036825|ref|YP_001803326.1| ATP-dependent Clp protease-like protein [Cyanothece sp. ATCC 51142]
 gi|171698279|gb|ACB51260.1| ATP-dependent Clp protease, proteolytic subunit [Cyanothece sp.
           ATCC 51142]
          Length = 226

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 72/212 (33%), Gaps = 33/212 (15%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSP 76
           ++ L +  FS     +              I+ +Q +I ++  +  D+    +   ++S 
Sbjct: 32  IIYLGLPLFSSDEIKQQVG-----------IDVTQLIIAQLLYLQFDNPEKPIYFYINST 80

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           G S Y G+AI    +        I +         + I     +  AA     G+ G   
Sbjct: 81  GTSWYTGDAIGFETEAFA-----ICDTMNYVKPPIHTICIGQAMGTAAMILSAGTKGCRA 135

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
             P+    L++     +                     +Q+    V  +    ++++SE+
Sbjct: 136 SLPHATIVLNQNRSGARG----------------QATDIQIRAKEVLHNKQTMLQILSEN 179

Query: 197 RNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                +K     D   + T  +AK+ GLID V
Sbjct: 180 TGQTVEKIAKDIDRTFYLTPEKAKEYGLIDRV 211


>gi|126657895|ref|ZP_01729048.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp.
           CCY0110]
 gi|126620835|gb|EAZ91551.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp.
           CCY0110]
          Length = 226

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 72/212 (33%), Gaps = 33/212 (15%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSP 76
           ++ L +  FS     +              I+ +Q +I ++  +  D+    +   ++S 
Sbjct: 32  IIYLGLPLFSSDEIKQQVG-----------IDVTQLIIAQLLYLQFDNPDKPIFFYINST 80

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           G S Y G+AI    +        I +         + I     +  AA     G+ G   
Sbjct: 81  GTSWYTGDAIGFETEAFA-----ICDTMNYVKPPIHTICIGQAMGTAAMILSAGTKGCRA 135

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
             P+    L++     +                     +Q+    V  +    ++++S++
Sbjct: 136 SLPHATIVLNQNRSGARG----------------QATDIQIRAKEVLHNKQTMLQILSQN 179

Query: 197 RNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                +K     D   + T  +AK+ GLID V
Sbjct: 180 TGQTPEKIAKDIDRTFYLTPEKAKEYGLIDRV 211


>gi|28493447|ref|NP_787608.1| ATP-dependent Clp protease proteolytic subunit [Tropheryma whipplei
           str. Twist]
 gi|28572440|ref|NP_789220.1| ATP-dependent Clp protease proteolytic subunit [Tropheryma whipplei
           TW08/27]
 gi|67460538|sp|Q83G49|CLPP1_TROWT RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|67460539|sp|Q83I18|CLPP2_TROW8 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|28410571|emb|CAD66958.1| ATP dependent Clp protease proteolytic subunit 2 [Tropheryma
           whipplei TW08/27]
 gi|28476488|gb|AAO44577.1| ATP-dependent Clp protease proteolytic subunit [Tropheryma whipplei
           str. Twist]
          Length = 207

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 67/180 (37%), Gaps = 27/180 (15%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             + +++ ++  +   D+   +I+ ++SPGGS  A  AI+  +Q ++ +   +      +
Sbjct: 44  ASADDVMAQLLVLEGQDAERDIIMYINSPGGSFTAMTAIYDTMQYIRPQIQTVCLGQAAS 103

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
           A+A  L +      +A   + +     +          D    + + ++           
Sbjct: 104 AAAVILSAGTPGKRLALPNARILIHQPVVASSGYGQASDIEIQAREIMRM---------- 153

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
                   + ++  +    +  V+ VS+           +   +I +  +A + GLID +
Sbjct: 154 -------REWLEKTLAQHSNKSVKQVSK----------DIDRDKILSSEQALEYGLIDQI 196


>gi|24380050|ref|NP_722005.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           mutans UA159]
 gi|60389781|sp|Q8DST7|CLPP_STRMU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|24378042|gb|AAN59311.1|AE014997_1 putative ATP-dependent Clp protease, proteolytic subunit
           [Streptococcus mutans UA159]
          Length = 196

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 47/155 (30%), Gaps = 2/155 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + ++SPGGS  AG AI   +  +K+  
Sbjct: 27  IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYINSPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    + + +K+
Sbjct: 87  QTIVMGIAASMGTIIASSGAKGKRFMLPNAEYLIHQPMGGTGGGTQQSDMAIAAEQLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                +    +              D        L
Sbjct: 147 RKKLEKILSDNSGKTIKQIHKDAERDYWMDAKETL 181


>gi|318057267|ref|ZP_07975990.1| hypothetical protein SSA3_04971 [Streptomyces sp. SA3_actG]
 gi|318076705|ref|ZP_07984037.1| hypothetical protein SSA3_08272 [Streptomyces sp. SA3_actF]
          Length = 222

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 18/47 (38%)

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
            SR  P      ++ GR +   EA   GL+D V   +EV        
Sbjct: 144 RSRLTPATAHEAMTTGRRYPAPEAMASGLVDAVAAADEVVTEAVTRA 190


>gi|296503172|ref|YP_003664872.1| phage protein [Bacillus thuringiensis BMB171]
 gi|296324224|gb|ADH07152.1| phage protein [Bacillus thuringiensis BMB171]
          Length = 260

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 62/208 (29%), Gaps = 53/208 (25%)

Query: 41  IAIRGQIEDSQE----------------LIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           I ++G I  + E                + + +   + DD    LIVS++SPGG  + G 
Sbjct: 5   IDVKGPIISNDEAWIYDWFEMDAASPGKISKELIDANGDD----LIVSINSPGGYVHEGS 60

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            I+ A++       V      +AASA  +I+ A + +  + T+ +               
Sbjct: 61  EIYTALKSYPGHVEVQIVG--LAASAASVIAMAGDKVRISPTAQIMIHNASM-------- 110

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
                                   +                      ++        ++ 
Sbjct: 111 --------------------WNGGDHRDMEKAAEMLKTTDRAIVNAYVIKS--GKSEEEL 148

Query: 205 LVLSDGRIWTG-AEAKKVGLIDVVGGQE 231
           L +     W G  +A +   +D +   +
Sbjct: 149 LHMMAEETWMGPQQALENNFVDEIMFMD 176


>gi|46199413|ref|YP_005080.1| periplasmic serine protease [Thermus thermophilus HB27]
 gi|46197038|gb|AAS81453.1| periplasmic serine protease [Thermus thermophilus HB27]
          Length = 275

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 57/183 (31%), Gaps = 21/183 (11%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           I+DS++++  I     D +   + + L +PGG   A E I  A+ +    K  +   H  
Sbjct: 68  IDDSEQVLRAIR--LTDKNVP-IDLILHTPGGLVLAAEQIAEALLRHPA-KVTVFVPHYA 123

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            +    +   A  I++     L      L QYP               VK    K     
Sbjct: 124 MSGGTLIALAADEIVMDENAVLGPVDPQLGQYPAAS-----------IVKVLEKKPLSEI 172

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220
             +    A    + +          L         ++   L     WT        +A+ 
Sbjct: 173 DDQTLILADVAEKALRQVKTTVKNLLKKHMPEEKAEEVATLLSQGTWTHDYPIDVEQARS 232

Query: 221 VGL 223
           +GL
Sbjct: 233 LGL 235


>gi|217076631|ref|YP_002334347.1| periplasmic serine protease [Thermosipho africanus TCF52B]
 gi|217036484|gb|ACJ75006.1| periplasmic serine protease [Thermosipho africanus TCF52B]
          Length = 291

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 62/183 (33%), Gaps = 22/183 (12%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+ELI  I+    D     +I    +PGG   A E I  A++K    K  +   H  
Sbjct: 83  IEDSEELIRAIKMTPNDMPIDLII---HTPGGLVLAAEQIANALKKH-KGKVTVFVPHYA 138

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            +    +   A  I++     L      L QYP               + S   K + + 
Sbjct: 139 MSGGTLIALAADEIVMDENAVLGPIDPQLGQYPAAS------------ILSVVKKKDINE 186

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220
             +       + +  +     +   L+ E      ++         WT        +A++
Sbjct: 187 IDDQTLILADVAEKAMKQMKEYATNLLKEKYEENAEELADKLVSGYWTHDYPITVEKARE 246

Query: 221 VGL 223
           +GL
Sbjct: 247 LGL 249


>gi|163856669|ref|YP_001630967.1| membrane protein, putative serine protease [Bordetella petrii DSM
           12804]
 gi|163260397|emb|CAP42699.1| membrane protein, putative serine protease [Bordetella petrii]
          Length = 480

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 65/236 (27%), Gaps = 11/236 (4%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-ELIERIERISR 62
           +L  I   +V ++           +S     S  V  + ++G +  +  E +      + 
Sbjct: 18  LLCAIAWLWVAMAAFMSAPARAQATSAPPGQSAPVVVLQLQGAVGPATTEYLRHGLADAN 77

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122
              A A+++ + +PGG A +   I RAI                 A++       +  + 
Sbjct: 78  ARRAAAVVLRIDTPGGLASSMRDIVRAIIASPVPVIGYVAPGGARAASAGTYILYACHLA 137

Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182
           A                      ++     ++           P  +             
Sbjct: 138 AMAPGTNLGAATPIPLGPDSRPRNEDHGKAETDPGGKPADAAPPPHDSKAVNDAAALIRS 197

Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSL 237
            +            RN  + +   +         EA +  +ID+V     ++ +  
Sbjct: 198 LAD--------MRGRNAEWAE-QAVRGAASLAAREALQQKVIDLVADDLHDLLRRA 244


>gi|206901598|ref|YP_002250810.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus
           thermophilum H-6-12]
 gi|206740701|gb|ACI19759.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus
           thermophilum H-6-12]
          Length = 194

 Score = 37.7 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 58/176 (32%), Gaps = 31/176 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGG   AG AI+  ++ +K +   +      + +A  
Sbjct: 43  VVAQLLFLESEDPEKDIYLYINSPGGEVSAGLAIYDTMRHIKPKVATVCVGQAASMAAIL 102

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L +       A   S V     L         ++     I  +                 
Sbjct: 103 LAAGDKGKRYALPHSRVMIHQPLGGAYGPAADIEIHTREILKI----------------- 145

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                              +++     P +K    +D   + +  EAK+ G++D V
Sbjct: 146 -------------KRVLNEILAHHTGQPIEKIERDTDRDFFMSAYEAKEYGIVDEV 188


>gi|119945201|ref|YP_942881.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Psychromonas
           ingrahamii 37]
 gi|259585963|sp|A1SUW7|CLPP_PSYIN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|119863805|gb|ABM03282.1| ATP-dependent Clp protease proteolytic subunit ClpP [Psychromonas
           ingrahamii 37]
          Length = 207

 Score = 37.7 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 58/193 (30%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +  ++  +  +     + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 42  VIFLTGPVEDHVANVIAAQLLFLESESPEKDIFIYINSPGGSISAGMAIYDTMQFIKPDV 101

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L S A         + V     L  +       +           
Sbjct: 102 STVCMGMAASMGAFLLASGAPGKRHCLPNAKVMIHQPLGGFQGQASDFEIHAKE------ 155

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                   + ++ H    L++       +              +
Sbjct: 156 ------------------------ILATKHRMNELLAFHTGKDIEIIAQDTDRDNFMRAS 191

Query: 217 EAKKVGLIDVVGG 229
           EA + G++D V  
Sbjct: 192 EAVEYGIVDSVLT 204


>gi|87198426|ref|YP_495683.1| hypothetical protein Saro_0401 [Novosphingobium aromaticivorans DSM
           12444]
 gi|87134107|gb|ABD24849.1| protein of unknown function DUF107 [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 460

 Score = 37.7 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 64/224 (28%), Gaps = 12/224 (5%)

Query: 30  HVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
             +     V  + I G I    +  +   I R +    A  +I+ + +PGG   +   I 
Sbjct: 30  QTQPGRDEVPVLTIEGAIGPATADYVAGGIARAAE-QGAPMVIIRMDTPGGLDTSMREII 88

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
           RAI                 A++       ++ + A             Q          
Sbjct: 89  RAILGSPVPVVTYVSPSGARAASAGAFILTASHVAAMAPGTNVGAATPVQLGAPAAPSTP 148

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
                ++             S          + + D+  +         RN  + +   +
Sbjct: 149 KSSDQQADDKG-------TSSPAKSGGASEAKALNDAIAYIRSLAEMRGRNADWAE-AAV 200

Query: 208 SDGRIWTGAEAKKVGLIDVVGGQE-EVWQSLYALGVDQSIRKIK 250
            +    +   A +  +ID+V   + ++   +  L V     +++
Sbjct: 201 REAASLSAKSALEQKVIDIVARDDGDLLAQINGLTVALGNGQVR 244


>gi|75906770|ref|YP_321066.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
           variabilis ATCC 29413]
 gi|110816454|sp|Q3MFR5|CLPP1_ANAVT RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|75700495|gb|ABA20171.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
           variabilis ATCC 29413]
          Length = 204

 Score = 37.7 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 57/182 (31%), Gaps = 31/182 (17%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  +D    + + ++SPGGS  AG  IF  ++ ++     I      +  A  
Sbjct: 43  IVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFL 102

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L +      ++   S +     L         ++                          
Sbjct: 103 LSAGTKGKRMSLPHSRIMIHQPLGGAQGQATDIE-------------------------- 136

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQE 231
               +    +          ++E    P ++    ++   + +  EA+  GLID V  + 
Sbjct: 137 ----IQAREILYHKRRLNDYLAEHTGQPIERIAEDTERDFFMSPDEARDYGLIDQVIDRH 192

Query: 232 EV 233
             
Sbjct: 193 AA 194


>gi|55981444|ref|YP_144741.1| hypothetical protein TTHA1475 [Thermus thermophilus HB8]
 gi|55772857|dbj|BAD71298.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 275

 Score = 37.7 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 57/183 (31%), Gaps = 21/183 (11%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           I+DS++++  I     D +   + + L +PGG   A E I  A+ +    K  +   H  
Sbjct: 68  IDDSEQVLRAIR--LTDKNVP-IDLILHTPGGLVLAAEQIAEALLRHPA-KVTVFVPHYA 123

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            +    +   A  I++     L      L QYP               VK    K     
Sbjct: 124 MSGGTLIALAADEIVMDENAVLGPVDPQLGQYPAAS-----------IVKVLEKKPLSEI 172

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220
             +    A    + +          L         ++   L     WT        +A+ 
Sbjct: 173 DDQTLILADVAEKALRQVKTTVKNLLKKHMPEEKAEEVATLLSQGTWTHDYPIDVEQARS 232

Query: 221 VGL 223
           +GL
Sbjct: 233 LGL 235


>gi|300905258|ref|ZP_07123031.1| hypothetical protein HMPREF9536_03281 [Escherichia coli MS 84-1]
 gi|300402877|gb|EFJ86415.1| hypothetical protein HMPREF9536_03281 [Escherichia coli MS 84-1]
          Length = 177

 Score = 37.7 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 2/91 (2%)

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
           + VS    +     L   +  +++G EA   GL D +    +    +    +D    ++ 
Sbjct: 1   QKVSAYTGLSVQAVLDT-EAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLS 58

Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
                K      +   +  + + D +P  + 
Sbjct: 59  GGRMTKETQSTTVSATASQADVTDVVPATEG 89


>gi|118602249|ref|YP_903464.1| ATP-dependent Clp protease proteolytic subunit [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|166214707|sp|A1AVN6|CLPP_RUTMC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|118567188|gb|ABL01993.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 198

 Score = 37.7 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IED  +  ++ ++  +  ++    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 34  IIFLVGPIEDYMANVVVAQLLFLESENPDQDIHLYINSPGGLVSAGLAIYDTMQFIKPDV 93

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A +   A           L            + +  + +  
Sbjct: 94  STLCIGQAASMGALLLTAGAKDKRFALPNVRCMIHQPLG---GFSGQASDIDIHAQEILK 150

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
              K         +     +                                    +  E
Sbjct: 151 VREKLNQIFKLHTSQTIKTIQ--------------------------KDTDRDNFMSANE 184

Query: 218 AKKVGLIDVV 227
           A K GLID V
Sbjct: 185 ATKYGLIDKV 194


>gi|254447665|ref|ZP_05061131.1| 3-hydroxybutyryl-CoA dehydratase, putative [gamma proteobacterium
           HTCC5015]
 gi|198263008|gb|EDY87287.1| 3-hydroxybutyryl-CoA dehydratase, putative [gamma proteobacterium
           HTCC5015]
          Length = 269

 Score = 37.7 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/214 (10%), Positives = 57/214 (26%), Gaps = 24/214 (11%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +++  ++I +D +  A+I+      G A+        +  +  +K        +      
Sbjct: 37  IVKTAKQIKKDRTVRAVILRGD---GPAFCSG-----LDVMSMKKTPWMIPQLLMKPGTK 88

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           + + A ++ +     +   + V                            +         
Sbjct: 89  ISNLAQDVSL-----IWRDLPVPVIAVTHGKCFGGGFQIALGADFRFSTQDCEFSIMETK 143

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG--Q 230
             +        +        +++          +   GR++   EA+K+G++  V     
Sbjct: 144 WGLIPDMGGSVTLRELVRADIAK---------ELTMTGRVFDAEEAQKIGIVTRVCDDPL 194

Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
            E       L               +  W  DLK
Sbjct: 195 AEAKDFAAELATRSPDALAAGKKLFQEAWTSDLK 228


>gi|158314330|ref|YP_001506838.1| enoyl-CoA hydratase [Frankia sp. EAN1pec]
 gi|158109735|gb|ABW11932.1| Enoyl-CoA hydratase/isomerase [Frankia sp. EAN1pec]
          Length = 288

 Score = 37.7 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 6/33 (18%), Positives = 12/33 (36%)

Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
              A ++GL+  VGG +        +     + 
Sbjct: 203 ARRAFELGLVQRVGGLDTALAWAREIAGLAPLT 235


>gi|327252451|gb|EGE64110.1| clp protease family protein [Escherichia coli STEC_7v]
          Length = 629

 Score = 37.7 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 64/205 (31%), Gaps = 34/205 (16%)

Query: 38  VARIAIRGQIEDSQELIERI-ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           V  + I  +I         + + I+   +A+ + + + SPGG  + G AI+ A++    +
Sbjct: 13  VVYVRIYDEIGGYGVKASALTDEINACGNASEIHLRIHSPGGDIFEGLAIYNALKNHPAK 72

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
           K  I  +  MAAS    I+   + IV  E +++           V               
Sbjct: 73  K--IVHIEGMAASMASFIAMCGDHIVMPENAMMMIHAPRGVTAGVSG------------- 117

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-G 215
                             V+   D++D          +        +   + +   W  G
Sbjct: 118 -----------------DVRRFADLMDKLGDTMAETYAGRTGRSKQEITAMMEAETWMDG 160

Query: 216 AEAKKVGLIDVVGGQEEVWQSLYAL 240
            E K  G  D V         + + 
Sbjct: 161 NECKANGFADEVIPAITAMARIESK 185


>gi|116490635|ref|YP_810179.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oenococcus
           oeni PSU-1]
 gi|290890048|ref|ZP_06553131.1| hypothetical protein AWRIB429_0521 [Oenococcus oeni AWRIB429]
 gi|116091360|gb|ABJ56514.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oenococcus
           oeni PSU-1]
 gi|290480239|gb|EFD88880.1| hypothetical protein AWRIB429_0521 [Oenococcus oeni AWRIB429]
          Length = 198

 Score = 37.3 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 49/155 (31%), Gaps = 2/155 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I ++G++ED  +  ++ ++  +   D    + + ++SPGGS  AG AI   +  +++  
Sbjct: 27  IILVQGEVEDQMATSIVAQLLFLDAQDPNKDIYMYINSPGGSVTAGMAIVDTMNFIRSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +     S           +       +          D   ++ + +K+
Sbjct: 87  QTIVMGMAASMATIIASSGTKGKRFMLPNAEYLIHQPMGGAGAGTQQTDMSIIADQLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                     +   P          D        L
Sbjct: 147 RKRLNNILKENSGKPIEKIEKDTERDHWMDSKETL 181


>gi|307265821|ref|ZP_07547372.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919216|gb|EFN49439.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 195

 Score = 37.3 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + +  +I D+    +I ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPGGSITAGFAIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      + +A  L + A     A   S +     L         +      I  ++ 
Sbjct: 89  VTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQGQATDIKIHAERILKLRD 148

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
              K                                +E+   P +K    ++   +    
Sbjct: 149 KLDKIL------------------------------AENTGQPIEKIKADTERDFFMDAE 178

Query: 217 EAKKVGLIDVV 227
           +AK  G+ID V
Sbjct: 179 DAKAYGIIDEV 189


>gi|153931022|ref|YP_001385267.1| putative Clp protease [Clostridium botulinum A str. ATCC 19397]
 gi|152927066|gb|ABS32566.1| putative Clp protease [Clostridium botulinum A str. ATCC 19397]
          Length = 247

 Score = 37.3 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 79/258 (30%), Gaps = 41/258 (15%)

Query: 32  EDNSPHVARIAIRGQIE------DSQELI--ERIERISRDDSATALIVSLSSPGGSAYAG 83
                 VA + + G I       D  + I  +R++    D     + + ++S GG  +  
Sbjct: 17  NSVENDVAEMYLYGTIRKGYWWDDEDDCISAKRVKNALADLRDKDVNIHINSGGGDVFES 76

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
            AI   +++      +   +  +AAS   +I  A+N IV  + S++              
Sbjct: 77  IAICNLLKQH--GGNITITIDALAASGASVICMAANKIVMPKNSMMMIH----------- 123

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
                     +             ++++     ++    D        L +         
Sbjct: 124 -------KAWTWTDGNADDLRKVAADLDKMDSAVLASYKDRFIGTEEELKAL-------- 168

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
              + +   +T  E K +G  D +   +E  +        ++    K  N  K       
Sbjct: 169 ---IKESSWFTAEECKSLGFCDEI--LDEQQEPEEPEENIKNSILNKYMNKVKEPQELKQ 223

Query: 264 KNLSISSLLEDTIPLMKQ 281
           +   + +  +  I  + +
Sbjct: 224 EPQVVENKNKQAIQNLFK 241


>gi|169763092|ref|XP_001727446.1| enoyl-CoA hydratase/isomerase family protein [Aspergillus oryzae
           RIB40]
 gi|238488953|ref|XP_002375714.1| enoyl-CoA hydratase/isomerase family protein [Aspergillus flavus
           NRRL3357]
 gi|83770474|dbj|BAE60607.1| unnamed protein product [Aspergillus oryzae]
 gi|220698102|gb|EED54442.1| enoyl-CoA hydratase/isomerase family protein [Aspergillus flavus
           NRRL3357]
          Length = 272

 Score = 37.3 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN----YWF 260
            ++ + + + G E+ K GL+D VGG EEV   +   G+ +           +        
Sbjct: 172 DLILEAKRFGGPESVKAGLVDGVGGLEEVLTLIRERGLQKKAATGIYGTMKEEMYRHSLD 231

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
               + +  +  E       Q +  GL AV
Sbjct: 232 ILDGHTANLAWREQLEDKKDQAQRDGLKAV 261


>gi|326391008|ref|ZP_08212557.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992953|gb|EGD51396.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 195

 Score = 37.3 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + +  +I D+    +I ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPGGSITAGFAIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      + +A  L + A     A   S +     L         +      I  ++ 
Sbjct: 89  VTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQGQATDIKIHAERILKLRD 148

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
              K                                +E+   P +K    ++   +    
Sbjct: 149 KLDKIL------------------------------AENTGQPIEKIKADTERDFFMDAE 178

Query: 217 EAKKVGLIDVV 227
           EAK  G+ID V
Sbjct: 179 EAKAYGIIDEV 189


>gi|77165111|ref|YP_343636.1| hypothetical protein Noc_1634 [Nitrosococcus oceani ATCC 19707]
 gi|254434754|ref|ZP_05048262.1| Nodulation efficiency protein D [Nitrosococcus oceani AFC27]
 gi|76883425|gb|ABA58106.1| Protein of unknown function DUF107 [Nitrosococcus oceani ATCC
           19707]
 gi|207091087|gb|EDZ68358.1| Nodulation efficiency protein D [Nitrosococcus oceani AFC27]
          Length = 459

 Score = 37.3 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 73/237 (30%), Gaps = 19/237 (8%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATA 68
           +  +++  LV L +     +   ++ +     + +RG I  +    + ++R     SA  
Sbjct: 6   RYFWILGPLVCLFLGGAVPAQQNQNLTGAAFLLDVRGVIGPATS--DYVQRAMARGSAEG 63

Query: 69  ---LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
              +I+ + +PGG   A   I + I                 A++            +  
Sbjct: 64  AALIILRMDTPGGLDTAMREIIQDILASPVPVVGYIAPSGARAASAGTYIM----YASHI 119

Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185
            ++  +  +    P   P   +L                            + +  ++ +
Sbjct: 120 AAMAPATNLGAATPVHLPMGGRLPEKTPPPGEGEEAG--------TSSEDTLTRKAINDA 171

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
             +   L ++           + +    +  EA ++ +ID++    +V   L  L  
Sbjct: 172 VAYIKGLAAQRGRNERWAEKAVREAASLSAQEALEMEVIDLIA--RDVSALLKRLDG 226


>gi|229088728|ref|ZP_04220285.1| Enoyl-CoA hydratase/isomerase [Bacillus cereus Rock3-44]
 gi|228694553|gb|EEL47972.1| Enoyl-CoA hydratase/isomerase [Bacillus cereus Rock3-44]
          Length = 263

 Score = 37.3 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
            ++  G      EA +VGL++ V  + E       L       K+  ++ P         
Sbjct: 163 EMMFTGEPLGAEEALQVGLVNHVVSRGEALNKAKELA-----AKMARFSLPALSLMKQSI 217

Query: 265 NLSISSLLEDTIPLMKQ 281
           N  +S  LE+ + +  +
Sbjct: 218 NKGLSYSLEEGLKIEAE 234


>gi|163792916|ref|ZP_02186892.1| PROBABLE TRIFUNCTONAL: ENOYL-COA HYDRATASE AND
           DELTA3-CIS-DELTA2-TRANS-ENOYL-COA ISOMERASE AND [alpha
           proteobacterium BAL199]
 gi|159181562|gb|EDP66074.1| PROBABLE TRIFUNCTONAL: ENOYL-COA HYDRATASE AND
           DELTA3-CIS-DELTA2-TRANS-ENOYL-COA ISOMERASE AND [alpha
           proteobacterium BAL199]
          Length = 699

 Score = 37.3 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 9/91 (9%)

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGG---QEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
               ++  GR+ +  EA K+G+ID +      +        L       +        + 
Sbjct: 149 AALDLIVSGRLVSEREALKLGMIDAIADGDLIDAAVAKAIELADVGENPR------RSST 202

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
               L     +  L D      + + +G+ A
Sbjct: 203 LSDGLTEAQANPGLFDAFRKSMEKRARGMNA 233


>gi|254798629|ref|YP_003058293.1| proteolytic subunit 2 of clp protease [Parachlorella kessleri]
 gi|229915577|gb|ACQ90920.1| proteolytic subunit 2 of clp protease [Parachlorella kessleri]
          Length = 202

 Score = 37.3 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 64/191 (33%), Gaps = 31/191 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G+++D  + +LI  +  ++ ++    + + ++SPGGS   G A++ A+  +K+  
Sbjct: 32  VLFLCGELDDELANQLIGIMLYLNAEEKNKGIYIYINSPGGSVTCGIAVYDAMNYIKSEV 91

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + ++  L   A    +A   S +                            
Sbjct: 92  TTICVGTAASMASFILAGGAYGKRIALPHSRIMIHQPEG--------------------- 130

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                     SE         +     +      L   SR++  D+          +  E
Sbjct: 131 GSQGQASEVLSESQEVMRIRREVGRIYAERTGQPLSRISRDMDRDQ--------FMSARE 182

Query: 218 AKKVGLIDVVG 228
            K+ G++D V 
Sbjct: 183 TKEYGIVDQVA 193


>gi|333023050|ref|ZP_08451114.1| putative enoyl-CoA hydratase/isomerase family protein [Streptomyces
           sp. Tu6071]
 gi|332742902|gb|EGJ73343.1| putative enoyl-CoA hydratase/isomerase family protein [Streptomyces
           sp. Tu6071]
          Length = 222

 Score = 37.3 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 18/47 (38%)

Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
            SR  P      ++ GR +   EA   GL+D V   +EV        
Sbjct: 144 RSRLTPATAHEAMTTGRRYPAPEAMASGLVDAVAAADEVVTEALTRA 190


>gi|134279120|ref|ZP_01765833.1| NfeD family protein [Burkholderia pseudomallei 305]
 gi|237508682|ref|ZP_04521397.1| NfeD family protein [Burkholderia pseudomallei MSHR346]
 gi|134249539|gb|EBA49620.1| NfeD family protein [Burkholderia pseudomallei 305]
 gi|235000887|gb|EEP50311.1| NfeD family protein [Burkholderia pseudomallei MSHR346]
          Length = 501

 Score = 37.3 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 71/230 (30%), Gaps = 14/230 (6%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSL 73
            L+ L +   + +         +  I + G I    +  ++  +ER +R+ +  A++  L
Sbjct: 24  VLIGLLLACAAVAGAAAAARAPIVVIPVAGAIGPASADFVVRGLERAAREHAPLAIV-QL 82

Query: 74  SSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
            +PGG   +   I +AI          +      AASAG  I  AS++   A  + +G+ 
Sbjct: 83  DTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARAASAGTYIVYASHVAAMAPGTNLGAA 142

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
             +      +                   A  +  +          +  +  +  +   L
Sbjct: 143 SPVQLGIGGQAPAGGRREP--------AGAPGAAGAGATDTESTETRKALHDAAAYIRGL 194

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
                         + +       +A    ++D++    +       L  
Sbjct: 195 AQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLAN--DPADLAAKLDG 242


>gi|254182381|ref|ZP_04888976.1| NfeD family protein [Burkholderia pseudomallei 1655]
 gi|184212917|gb|EDU09960.1| NfeD family protein [Burkholderia pseudomallei 1655]
          Length = 501

 Score = 37.3 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 71/230 (30%), Gaps = 14/230 (6%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSL 73
            L+ L +   + +         +  I + G I    +  ++  +ER +R+ +  A++  L
Sbjct: 24  VLIGLLLACAAAAGAAAAARAPIVVIPVAGAIGPASADFVVRGLERAAREHAPLAIV-QL 82

Query: 74  SSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
            +PGG   +   I +AI          +      AASAG  I  AS++   A  + +G+ 
Sbjct: 83  DTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARAASAGTYIVYASHVAAMAPGTNLGAA 142

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
             +      +                   A  +  +          +  +  +  +   L
Sbjct: 143 SPVQLGIGGQAPAGGRREP--------AGAPGAAGAGATDTESTETRKALHDAAAYIRGL 194

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
                         + +       +A    ++D++    +       L  
Sbjct: 195 AQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLAN--DPADLAAKLDG 242


>gi|167038050|ref|YP_001665628.1| ATP-dependent Clp protease proteolytic subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040915|ref|YP_001663900.1| ATP-dependent Clp protease proteolytic subunit [Thermoanaerobacter
           sp. X514]
 gi|256752437|ref|ZP_05493296.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914951|ref|ZP_07132267.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter sp. X561]
 gi|307723815|ref|YP_003903566.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter sp. X513]
 gi|320116459|ref|YP_004186618.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|226706551|sp|B0KBA4|CLPP_THEP3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706552|sp|B0K533|CLPP_THEPX RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166855155|gb|ABY93564.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter sp. X514]
 gi|166856884|gb|ABY95292.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256748706|gb|EEU61751.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889886|gb|EFK85032.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter sp. X561]
 gi|307580876|gb|ADN54275.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter sp. X513]
 gi|319929550|gb|ADV80235.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 195

 Score = 37.3 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + +  +I D+    +I ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 29  IVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPGGSITAGFAIYDTMQYIKPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      + +A  L + A     A   S +     L         +      I  ++ 
Sbjct: 89  VTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQGQATDIKIHAERILKLRD 148

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
              K                                +E+   P +K    ++   +    
Sbjct: 149 KLDKIL------------------------------AENTGQPIEKIKADTERDFFMDAE 178

Query: 217 EAKKVGLIDVV 227
           +AK  G+ID V
Sbjct: 179 DAKAYGIIDEV 189


>gi|266626161|ref|ZP_06119096.1| translocation-enhancing protein TepA [Clostridium hathewayi DSM
           13479]
 gi|288861931|gb|EFC94229.1| translocation-enhancing protein TepA [Clostridium hathewayi DSM
           13479]
          Length = 138

 Score = 37.3 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
            R +   + L    G +  G E  K GLID VGG ++  + LY +
Sbjct: 88  KRLMLNTEMLTRDLGTVLVGEETVKEGLIDEVGGIKDALRKLYEM 132


>gi|322368650|ref|ZP_08043217.1| enoyl-CoA hydratase [Haladaptatus paucihalophilus DX253]
 gi|320551381|gb|EFW93028.1| enoyl-CoA hydratase [Haladaptatus paucihalophilus DX253]
          Length = 274

 Score = 37.3 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 19/46 (41%)

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
               ++  G I    EA  +GL+D V   +E    +Y L    + +
Sbjct: 171 QAMRLILSGEIIDAEEAYDIGLVDEVCADDEFEDRVYELAGRMADK 216


>gi|108798486|ref|YP_638683.1| 3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein [Mycobacterium
           sp. MCS]
 gi|119867587|ref|YP_937539.1| 3-hydroxyacyl-CoA dehydrogenase, NAD-binding [Mycobacterium sp.
           KMS]
 gi|108768905|gb|ABG07627.1| 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase
           [Mycobacterium sp. MCS]
 gi|119693676|gb|ABL90749.1| 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase
           [Mycobacterium sp. KMS]
          Length = 716

 Score = 37.3 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 80/242 (33%), Gaps = 18/242 (7%)

Query: 63  DDSATALI-VSLSSPGGSAYAG-----EAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116
           D+ A  ++ ++L  P GSA        E++  A+ +++  K  +T V   +A   +    
Sbjct: 10  DEDADGIVTLTLDDPTGSANVMNDHYRESMHNAVNRLEAEKDSVTGVVLASAKKTFFAGG 69

Query: 117 ASNIIVA-AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-------PMKAEPSPFS 168
               ++         +  +          L+ LG+ + +  +         +        
Sbjct: 70  DLKGLIKLGPEDAAEAFDLAESTKADLRRLETLGIPVVAAINGAALGGGLEIALATHHRI 129

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSE---SRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
             + + V +    V          V+       +      +LS G  ++  +A  +GL+D
Sbjct: 130 AADVRGVVIGLPEVTLGLLPGGGGVARTVRMFGVQKAFAEILSTGARFSPPKALDIGLVD 189

Query: 226 VV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
            +    +E+  +      +     ++ W+                + +  + P   + ++
Sbjct: 190 QLVQSVDELIPAAKKWIKENPEAGVQPWDAKGYKLPGGTPASPGLAAILPSFPATLKKQL 249

Query: 285 QG 286
           +G
Sbjct: 250 KG 251


>gi|226195196|ref|ZP_03790787.1| NfeD family protein [Burkholderia pseudomallei Pakistan 9]
 gi|254198801|ref|ZP_04905221.1| NfeD family protein [Burkholderia pseudomallei S13]
 gi|254262324|ref|ZP_04953189.1| NfeD family protein [Burkholderia pseudomallei 1710a]
 gi|254299883|ref|ZP_04967331.1| NfeD family protein [Burkholderia pseudomallei 406e]
 gi|157809777|gb|EDO86947.1| NfeD family protein [Burkholderia pseudomallei 406e]
 gi|169655540|gb|EDS88233.1| NfeD family protein [Burkholderia pseudomallei S13]
 gi|225933001|gb|EEH28997.1| NfeD family protein [Burkholderia pseudomallei Pakistan 9]
 gi|254213326|gb|EET02711.1| NfeD family protein [Burkholderia pseudomallei 1710a]
          Length = 501

 Score = 37.3 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 71/230 (30%), Gaps = 14/230 (6%)

Query: 16  SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSL 73
            L+ L +   + +         +  I + G I    +  ++  +ER +R+ +  A++  L
Sbjct: 24  VLIGLLLACAAVAGAAAAARAPIVVIPVAGAIGPASADFVVRGLERAAREHAPLAIV-QL 82

Query: 74  SSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
            +PGG   +   I +AI          +      AASAG  I  AS++   A  + +G+ 
Sbjct: 83  DTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARAASAGTYIVYASHVAAMAPGTNLGAA 142

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
             +      +                   A  +  +          +  +  +  +   L
Sbjct: 143 SPVQLGIGGQAPAGGRREP--------AGAPGAAGAGATDTESIETRKALHDAAAYIRGL 194

Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
                         + +       +A    ++D++    +       L  
Sbjct: 195 AQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLAN--DPADLAAKLDG 242


>gi|329735373|gb|EGG71665.1| glycine dehydrogenase (decarboxylating) [Staphylococcus
          epidermidis VCU045]
 gi|329737245|gb|EGG73499.1| glycine dehydrogenase (decarboxylating) [Staphylococcus
          epidermidis VCU028]
          Length = 303

 Score = 37.3 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 38 VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
          +  + ++G I D ++L + I     DD+  A+ V   +  GS    E I   I+ 
Sbjct: 39 IIEVDLKGTITDLEKLEQLI-----DDNTAAVAVQYPNFYGSIEDLEQINNYIKD 88


>gi|15606868|ref|NP_214248.1| nodulation competitiveness protein NfeD [Aquifex aeolicus VF5]
 gi|2984101|gb|AAC07639.1| nodulation competitiveness protein NfeD [Aquifex aeolicus VF5]
          Length = 425

 Score = 37.3 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 77/261 (29%), Gaps = 39/261 (14%)

Query: 15  LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVS 72
           + L++L  V+FS+          +      G I    +  +   I++  ++     +++ 
Sbjct: 3   IILLSLFWVFFSFG--------KIFVAQWEGPITPTTADYVERTIQKAQKEGGTLYILL- 53

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           L++PGG     E++ + IQ  +     I                                
Sbjct: 54  LNTPGGLV---ESMRKIIQSFETAPFPIVVYVYPPGGRAASAG----------------- 93

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                                ++ ++          E   K   +M + V      FVR 
Sbjct: 94  -----AIITIAADIAAMAPGTNIGAAHPVLATPQGREKKEKGKDVMMEKVLQDMLAFVRA 148

Query: 193 VSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGG-QEEVWQSLYALGVDQSIRKIK 250
           +++ +          + +    +  EA K G+ID++    E++   L      + +  + 
Sbjct: 149 IAKEKGRNVKVVEKMVKESLSLSAEEALKKGVIDLIAYNLEDLLTKLEGK-KVKKLNAVY 207

Query: 251 DWNPPKNYWFCDLKNLSISSL 271
           +             +L    L
Sbjct: 208 EIRTKGKEVVFLKPSLREEFL 228


>gi|301299398|ref|ZP_07205678.1| drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner)
           (DHA2) family protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853004|gb|EFK80608.1| drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner)
           (DHA2) family protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 478

 Score = 37.3 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 12/154 (7%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD- 64
           + I   + +L ++ L    F+  +  +   PHV  +++ G I     L+  +   S    
Sbjct: 175 RDIFFIFTVLLVIGLLFAIFTLENVNKITRPHVDVLSVLGSIIGFSSLVAGVSFASESGW 234

Query: 65  ---SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121
                  LI+              I  A +++K   PV+        +            
Sbjct: 235 TSFKVLGLIL--------VAIIVLILYARRQLKLENPVLNLRVFSKVNFRTGAFLVMIDF 286

Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
               +S+      +     +   +  + +    +
Sbjct: 287 GIILSSMYLLPQFIQNAMLLPVAMTGIIMLPGGI 320


>gi|320161989|ref|YP_004175214.1| hypothetical protein ANT_25880 [Anaerolinea thermophila UNI-1]
 gi|319995843|dbj|BAJ64614.1| hypothetical protein ANT_25880 [Anaerolinea thermophila UNI-1]
          Length = 280

 Score = 37.3 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 67/182 (36%), Gaps = 19/182 (10%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           I+DS++++  I+    D     + + L +PGG   A E I  A+ +     PV   V   
Sbjct: 67  IDDSEQVLRAIK--LTDPKVP-IDIILHTPGGLVLAAEQIANALSRHPA--PVTVFVPHY 121

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           A S G LI+ A+N IV  E +++G +            L  L           +      
Sbjct: 122 AMSGGTLIALAANQIVMDENAVLGPVDPQLGQYPAASILKVLEQK-------DINRVDDQ 174

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-----IWTGAEAKKV 221
              +   A + M  V ++         S+           L  GR       T  EA+++
Sbjct: 175 TLILADVARKAMVQVKETVRRIACCHYSQEVAERLA--DELPSGRWTHDYPITVEEAREL 232

Query: 222 GL 223
           GL
Sbjct: 233 GL 234


>gi|257056800|ref|YP_003134632.1| enoyl-CoA hydratase/carnithine racemase [Saccharomonospora viridis
           DSM 43017]
 gi|256586672|gb|ACU97805.1| enoyl-CoA hydratase/carnithine racemase [Saccharomonospora viridis
           DSM 43017]
          Length = 220

 Score = 37.3 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                ++ GR + G EA ++GL+D V  ++EV  S    
Sbjct: 150 AAVASMTTGRRFGGHEAAEIGLVDAVAEEDEVLSSACER 188


>gi|225181795|ref|ZP_03735232.1| protein of unknown function DUF107 [Dethiobacter alkaliphilus AHT
          1]
 gi|225167468|gb|EEG76282.1| protein of unknown function DUF107 [Dethiobacter alkaliphilus AHT
          1]
          Length = 452

 Score = 37.3 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 6/86 (6%)

Query: 3  FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERI 60
          F + K+   +V+++++T+       S         V  + + G I   Q   L  ++E  
Sbjct: 7  FFICKV---FVIIAIITMHFSGMFTSRIDAAADRPVWVVNLDGTITAGQFNFLQRQVESA 63

Query: 61 SRDDSATALIVSLSSPGGSAYAGEAI 86
            +  A   ++ +++PGG   A   I
Sbjct: 64 EEN-GAQLFVLVMNTPGGLVDATMKI 88


>gi|217425450|ref|ZP_03456943.1| NfeD family protein [Burkholderia pseudomallei 576]
 gi|217391413|gb|EEC31442.1| NfeD family protein [Burkholderia pseudomallei 576]
          Length = 504

 Score = 37.3 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 74/239 (30%), Gaps = 14/239 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDD 64
           ++    V++ L+       + +         +  I + G I    +  ++  +ER +R+ 
Sbjct: 18  RLARAAVLIGLLLACAAAAAAAGAAAAARAPIVVIPVAGAIGPASADFVVRGLERAAREH 77

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVA 123
           +  A++  L +PGG   +   I +AI          +      AASAG  I  AS++   
Sbjct: 78  APLAIV-QLDTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARAASAGTYIVYASHVAAM 136

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
           A  + +G+   +      +                   A  +  +          +  + 
Sbjct: 137 APGTNLGAASPVQLGIGGQAPAGGRREP--------AGAPGAAGAGATDTESTETRKALH 188

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
            +  +   L              + +       +A    ++D++    +       L  
Sbjct: 189 DAAAYIRGLAQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLAN--DPADLAAKLDG 245


>gi|163782276|ref|ZP_02177274.1| hypothetical protein HG1285_05800 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882309|gb|EDP75815.1| hypothetical protein HG1285_05800 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 290

 Score = 37.3 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 66/211 (31%), Gaps = 10/211 (4%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+ ++  I     D     +I    +PGG A A   I  A+ K K    VI   + M
Sbjct: 75  IEDSERVLRAIRMTPDDMPIDFVI---HTPGGLALAATQIANALAKHKAPVRVIVPHYAM 131

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           +   G LI+ +++ I+    +++G +            L  L                  
Sbjct: 132 SG--GTLIALSADEIIMDPNAVLGPVDPQIGQMPAASILKVLEKKE---PKDIDDQTLIL 186

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL--I 224
                    QM + + +      +      R          +     T    K++GL  I
Sbjct: 187 ADVSEKAIRQMKEYLTNLLTSKGMEKEKAERIAEELAVGKFTHDYPLTADYLKELGLNVI 246

Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
             V  +      LY   V      ++    P
Sbjct: 247 TEVPEEVYALMELYEQPVGAQPPSVQYIPVP 277


>gi|126668931|ref|ZP_01739872.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter sp.
           ELB17]
 gi|126626594|gb|EAZ97250.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter sp.
           ELB17]
          Length = 211

 Score = 37.3 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 43  VIFMVGPVEDHMANLVVAQLLFLESENPDKDIHLYINSPGGSVSAGMSIYDTMQFIKPDV 102

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A+        S V     L  Y      ++     I  ++ 
Sbjct: 103 ATLCVGQAASMGAFLLAGGAAGKRACLPNSRVMIHQPLGGYQGQATDIEIHTREILKIRH 162

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                                             +++       +               
Sbjct: 163 ------------------------------TLNSILAHHTGQDLETISRDTDRDNFMDPT 192

Query: 217 EAKKVGLIDVVGG 229
           +AK  GLID V  
Sbjct: 193 QAKAYGLIDSVLD 205


>gi|78044452|ref|YP_361259.1| hypothetical protein CHY_2465 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996567|gb|ABB15466.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 280

 Score = 37.3 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 5/105 (4%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS++++  I     D       + L +PGG   A E I  A++K   +  V   +   
Sbjct: 72  IEDSEQILRAIRLTPDDMPID---LVLHTPGGLVLAAEQIAEALRKHPAK--VTVFIPHY 126

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           A S G LI+ A++ IV  E ++ G +            L  +   
Sbjct: 127 AMSGGTLIALAADEIVMDENAVAGPVDPQLGEYPAASILKVVEQK 171


>gi|78778230|ref|YP_394545.1| ATP-dependent Clp protease proteolytic subunit [Sulfurimonas
           denitrificans DSM 1251]
 gi|124015202|sp|Q30NX1|CLPP_SULDN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|78498770|gb|ABB45310.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sulfurimonas
           denitrificans DSM 1251]
          Length = 196

 Score = 37.3 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G++ D+    ++ ++  +  +D    +   ++SPGG   AG AI+  +  ++   
Sbjct: 29  IIMLSGEVNDAVASSIVAQMLFLEAEDPEKDIYFYINSPGGVVTAGMAIYDTMNYIRPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             I      +  A  L S A     A   + +     L 
Sbjct: 89  ATICVGQAASMGAFLLSSGAKGKRYALPHARIMIHQPLG 127


>gi|323953618|gb|EGB49480.1| peptidase S49 [Escherichia coli H263]
          Length = 174

 Score = 37.3 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 1/102 (0%)

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
            +      L + GV I  + S   K + + F  +  +  Q MQ  +D++   F   V+  
Sbjct: 1   SHVSYAGHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMF 60

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
             +  D     ++  ++ G    + GL D +    +    + 
Sbjct: 61  TGLSVDAV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 101


>gi|53721651|ref|YP_110636.1| hypothetical protein BPSS0615 [Burkholderia pseudomallei K96243]
 gi|52212065|emb|CAH38072.1| putative membrane protein [Burkholderia pseudomallei K96243]
          Length = 504

 Score = 37.3 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 74/239 (30%), Gaps = 14/239 (5%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDD 64
           ++    V++ L+       + +         +  I + G I    +  ++  +ER +R+ 
Sbjct: 18  RLARAAVLIGLLLACAAAAAAAGAAAAARAPIVVIPVAGAIGPASADFVVRGLERAAREH 77

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVA 123
           +  A++  L +PGG   +   I +AI          +      AASAG  I  AS++   
Sbjct: 78  APLAIV-QLDTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARAASAGTYIVYASHVAAM 136

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
           A  + +G+   +      +                   A  +  +          +  + 
Sbjct: 137 APGTNLGAASPVQLGIGGQAPAGGRREP--------AGAPGAAGAGATDTESIETRKALH 188

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
            +  +   L              + +       +A    ++D++    +       L  
Sbjct: 189 DAAAYIRGLAQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLAN--DPADLAAKLDG 245


>gi|188586359|ref|YP_001917904.1| protein of unknown function DUF107 [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351046|gb|ACB85316.1| protein of unknown function DUF107 [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 462

 Score = 37.3 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 75/210 (35%), Gaps = 5/210 (2%)

Query: 5   LKKIK-TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIER-IERIS 61
           L+ +K T  +++ +  L+ +    SS   ++ P    + +   I   + + +E+ IE   
Sbjct: 9   LRFLKVTSILVILVFLLSAIQMPVSSEENNSDPKYKLLTVEDTITAGTSQYLEQGIENAI 68

Query: 62  RDDSATALIVSLSSPGGSA-YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
            +     +I+ L++PGG      + + + +         ++    +AASAG  I  + ++
Sbjct: 69  -NQGYDGVIIVLNTPGGLVDATLDIMGKIVNSPIPVITFVSPSGAIAASAGTFILVSGHV 127

Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
                 S  G+   +   P  +   +    +I  +                     + ++
Sbjct: 128 AAMTPGSTCGAAMPVTMQPGEEGTQEADQKTINFLAGHLKSVAREQGRPEEVVEKFVTEN 187

Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
           +  ++     + V E      D  L    G
Sbjct: 188 LTLNASEALEKNVIEFNEPNLDALLTAIHG 217


>gi|220923283|ref|YP_002498585.1| NAD-binding 3-hydroxyacyl-CoA dehydrogenase [Methylobacterium
           nodulans ORS 2060]
 gi|219947890|gb|ACL58282.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Methylobacterium
           nodulans ORS 2060]
          Length = 691

 Score = 37.3 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           + +GR+    EA  +GL+D V   + +  +L       + R++ +   P+     +    
Sbjct: 156 IGEGRVLKAPEAHDLGLLDEVVTGDLLVAAL-ERAPHVAKRRVSELPVPRGDAAAEALAF 214

Query: 267 SISSLLEDTIPLMKQT 282
           S +     ++P ++  
Sbjct: 215 SRARKAAKSVPAIEAA 230


>gi|47027428|gb|AAT08791.1| capsid protein [Wolbachia phage WO]
          Length = 92

 Score = 37.3 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              V+L++ +R +  +K      G  + G +A ++GL D V    E   
Sbjct: 1   EMLVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFIN 48


>gi|148255923|ref|YP_001240508.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bradyrhizobium
           sp. BTAi1]
 gi|166201801|sp|A5EKA8|CLPP_BRASB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|146408096|gb|ABQ36602.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bradyrhizobium
           sp. BTAi1]
          Length = 210

 Score = 37.3 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 58/193 (30%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     ++ ++  +  ++    + + ++SPGG   +G AI+  +Q ++   
Sbjct: 37  IIFVTGPVEDGMATLIVAQLLFLEAENPKKEIAMYINSPGGVVTSGLAIYDTMQFIRPAV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                           +       + +     G   + F  P  +  + +     +    
Sbjct: 97  ST--------------LCTGQAASMGSLLLCAGHKDMRFSLPNSRIMVHQPSGGFQG--- 139

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216
                            + +    + S       +  +     Y      L   +  T  
Sbjct: 140 -------------QATDIMLHAQEILSLKKRLNEIYVKHTGQSYKAIEDALERDKFLTAE 186

Query: 217 EAKKVGLIDVVGG 229
            A + GLID V  
Sbjct: 187 AAAEFGLIDKVID 199


>gi|160878535|ref|YP_001557503.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           phytofermentans ISDg]
 gi|160427201|gb|ABX40764.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           phytofermentans ISDg]
          Length = 193

 Score = 37.3 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 54/181 (29%), Gaps = 31/181 (17%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  ++ ++  +  +D    + + ++SPGGS  AG AI+  +  +K     I      +
Sbjct: 39  VSASVIVAQLLFLEAEDPGKDISLYINSPGGSVTAGMAIYDTMNYIKCDVSTICIGMAAS 98

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L   A     A   + V            K     + +  +++     K      
Sbjct: 99  MGAFLLAGGAKGKRFALPNAEVMIHQPSG---GAKGQATDIQIVAENILKIKKKLNTIL- 154

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226
                                     SE+   P +            +  EAK  G+ID 
Sbjct: 155 --------------------------SENTGKPLEVVEVDTERDYYMSAEEAKNYGIIDS 188

Query: 227 V 227
           V
Sbjct: 189 V 189


>gi|228476130|ref|ZP_04060838.1| glycine dehydrogenase (decarboxylating) [Staphylococcus hominis
           SK119]
 gi|228269953|gb|EEK11433.1| glycine dehydrogenase (decarboxylating) [Staphylococcus hominis
           SK119]
          Length = 450

 Score = 37.3 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 38  VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
           +  + + G I D ++L + I     DD   A+ V   +  G+    E I   I+ 
Sbjct: 184 IVEVDLNGTITDLEKLEQAI-----DDDTAAVAVQYPNFYGTIEDLEKIHSYIEN 233


>gi|115401718|ref|XP_001216447.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114190388|gb|EAU32088.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 666

 Score = 37.3 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257
            ++ + R + GA++ K GL+D VGG +E    +   G+ +           + 
Sbjct: 566 DLILEARRFGGADSVKAGLVDAVGGLDEALAMIRQRGLTKKPATGIYGTMKEE 618


>gi|118586974|ref|ZP_01544406.1| ATP-dependent Clp protease, proteolytic subunit [Oenococcus oeni
           ATCC BAA-1163]
 gi|45597799|emb|CAE54287.1| ClpP protease [Oenococcus oeni]
 gi|118432596|gb|EAV39330.1| ATP-dependent Clp protease, proteolytic subunit [Oenococcus oeni
           ATCC BAA-1163]
          Length = 202

 Score = 37.3 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 49/155 (31%), Gaps = 2/155 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I ++G++ED  +  ++ ++  +   D    + + ++SPGGS  AG AI   +  +++  
Sbjct: 27  IILVQGEVEDQMATSIVAQLLFLDAQDPNKDIYMYINSPGGSVTAGMAIVDTMNFIRSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +     S           +       +          D   ++ + +K+
Sbjct: 87  QTIVMGMAASMATIIASSGTKGKRFMLPNAEYLIHQPMGGAGAGTQQTDMSIIADQLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                     +   P          D        L
Sbjct: 147 RKRLNNILKENSGKPIEKIEKDTERDHWMDSKETL 181


>gi|27468139|ref|NP_764776.1| glycine dehydrogenase subunit 1 [Staphylococcus epidermidis ATCC
           12228]
 gi|57867046|ref|YP_188677.1| glycine dehydrogenase subunit 1 [Staphylococcus epidermidis RP62A]
 gi|282876038|ref|ZP_06284905.1| glycine dehydrogenase (decarboxylating) [Staphylococcus epidermidis
           SK135]
 gi|293366503|ref|ZP_06613180.1| glycine dehydrogenase (decarboxylating) subunit 1 [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|37537793|sp|Q8CMM0|GCSPA_STAES RecName: Full=Probable glycine dehydrogenase [decarboxylating]
           subunit 1; AltName: Full=Glycine cleavage system
           P-protein subunit 1; AltName: Full=Glycine decarboxylase
           subunit 1
 gi|81674491|sp|Q5HP13|GCSPA_STAEQ RecName: Full=Probable glycine dehydrogenase [decarboxylating]
           subunit 1; AltName: Full=Glycine cleavage system
           P-protein subunit 1; AltName: Full=Glycine decarboxylase
           subunit 1
 gi|27315685|gb|AAO04820.1|AE016748_54 glycine dehydrogenase (decarboxylating) subunit 1 [Staphylococcus
           epidermidis ATCC 12228]
 gi|57637704|gb|AAW54492.1| glycine cleavage system P protein, subunit 1 [Staphylococcus
           epidermidis RP62A]
 gi|281295063|gb|EFA87590.1| glycine dehydrogenase (decarboxylating) [Staphylococcus epidermidis
           SK135]
 gi|291319272|gb|EFE59641.1| glycine dehydrogenase (decarboxylating) subunit 1 [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329725368|gb|EGG61851.1| glycine dehydrogenase (decarboxylating) [Staphylococcus epidermidis
           VCU144]
          Length = 448

 Score = 37.3 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 38  VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
           +  + ++G I D ++L + I     DD+  A+ V   +  GS    E I   I+ 
Sbjct: 184 IIEVDLKGTITDLEKLEQLI-----DDNTAAVAVQYPNFYGSIEDLEQINNYIKD 233


>gi|222152607|ref|YP_002561782.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           uberis 0140J]
 gi|254763804|sp|B9DTU8|CLPP_STRU0 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|222113418|emb|CAR41093.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus uberis 0140J]
          Length = 196

 Score = 37.3 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 47/155 (30%), Gaps = 2/155 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 27  IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S           +       +          D   V+ + +K+
Sbjct: 87  QTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGTGSGTQQTDMAIVAEQLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                +    +              D        L
Sbjct: 147 RKRLEKILSDNSGKTIKQIHKDAERDYWMDAKETL 181


>gi|189463031|ref|ZP_03011816.1| hypothetical protein BACCOP_03733 [Bacteroides coprocola DSM 17136]
 gi|198276521|ref|ZP_03209052.1| hypothetical protein BACPLE_02716 [Bacteroides plebeius DSM 17135]
 gi|237708586|ref|ZP_04539067.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|260642222|ref|ZP_05414941.2| putative prophage L54a, Clp protease [Bacteroides finegoldii DSM
           17565]
 gi|189430313|gb|EDU99297.1| hypothetical protein BACCOP_03733 [Bacteroides coprocola DSM 17136]
 gi|198270609|gb|EDY94879.1| hypothetical protein BACPLE_02716 [Bacteroides plebeius DSM 17135]
 gi|229457515|gb|EEO63236.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|260623181|gb|EEX46052.1| putative prophage L54a, Clp protease [Bacteroides finegoldii DSM
           17565]
          Length = 368

 Score = 37.3 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 70/212 (33%), Gaps = 38/212 (17%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSA-TALIVSLSSPGGSAYA 82
           S   ++  +    + I + G I D  E+      + +   +     + V ++S GG  Y+
Sbjct: 24  SRFFNITTSDDGTSTIFLYGDIGDYTEVQSGRIAQELMEAERVSRRIHVRINSNGGEVYS 83

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           G AIF A++  +        V  +AAS   +I+     +  ++ + +    V       K
Sbjct: 84  GIAIFNALRHSQADIR--IYVDGIAASMASVIALCGKPVEMSKYARLMLHSVSGGCYGNK 141

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             L +    I+S++                                   + +E   +  +
Sbjct: 142 QDLQRCMEEIESLE------------------------------GSLSEIYAERLGMSKE 171

Query: 203 KTLVLS---DGRIWTGAEAKKVGLIDVVGGQE 231
           +        +    T  EA  +G ID +   +
Sbjct: 172 EVKQTYFDGEDHWLTAKEALDLGFIDDIYDAD 203


>gi|78043074|ref|YP_359188.1| ATP-dependent Clp protease proteolytic subunit [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|90101405|sp|Q3AF96|CLPP_CARHZ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|77995189|gb|ABB14088.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 195

 Score = 37.3 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 65/194 (33%), Gaps = 33/194 (17%)

Query: 41  IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
           I I G I+D  +  +I ++  +  +D    + + ++SPGG   AG AI+  +Q +K    
Sbjct: 31  IFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPGGVITAGMAIYDTMQYIKPDVS 90

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
            I      +  A  L + A     +   + +     L         +D            
Sbjct: 91  TICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQGQATDIDIHARE------- 143

Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAE 217
                                  +         L+++    P +K    ++   + + AE
Sbjct: 144 -----------------------ILRMRDMLNELLTKHTGQPKEKIERDTERDFFMSAAE 180

Query: 218 AKKVGLIDVVGGQE 231
           AK+ G+ID V    
Sbjct: 181 AKEYGIIDEVITVR 194


>gi|303248889|ref|ZP_07335137.1| Enoyl-CoA hydratase/isomerase [Desulfovibrio fructosovorans JJ]
 gi|302489688|gb|EFL49623.1| Enoyl-CoA hydratase/isomerase [Desulfovibrio fructosovorans JJ]
          Length = 267

 Score = 37.3 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 26/64 (40%)

Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
           ++  EA  +G++D +     + +    +  +    ++      +     +L +L  S  L
Sbjct: 179 FSAEEALDLGIVDKIVPAARLEEEAIKVANNYREPQVSTMLAIRKLLKSNLDDLRRSLEL 238

Query: 273 EDTI 276
           ED +
Sbjct: 239 EDLL 242


>gi|237755491|ref|ZP_04584113.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692355|gb|EEP61341.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 201

 Score = 37.3 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 59/189 (31%), Gaps = 33/189 (17%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            I   I +   ++ ++  +  +D    + + ++SPGG   AG AI+  +  +K     I 
Sbjct: 40  PIDDHIANL--VVAQLLFLESEDPDKDIYMYINSPGGVVTAGLAIYDTMNYIKPDVVTIC 97

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                +  A  L + A     +   + +     L  +      ++               
Sbjct: 98  MGQAASMGAFLLSAGAKGKRYSLPNARIMIHQPLGGFQGQATDIEIHAKE---------- 147

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220
                               +          +++    P +K    ++   + +  EAK+
Sbjct: 148 --------------------ILRLKRMLNEYLAKHTGQPIEKIEADTERDYFMSAEEAKE 187

Query: 221 VGLIDVVGG 229
            GLID V  
Sbjct: 188 YGLIDKVIY 196


>gi|227892362|ref|ZP_04010167.1| MFS family major facilitator transporter [Lactobacillus salivarius
           ATCC 11741]
 gi|227865769|gb|EEJ73190.1| MFS family major facilitator transporter [Lactobacillus salivarius
           ATCC 11741]
          Length = 478

 Score = 37.3 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62
           + I   + +L ++ L    F+  +  +   PHV  +++ G I     L+  +   S 
Sbjct: 175 RDIFFIFTVLLVIGLLFAIFTLKNVNKITRPHVDVLSVLGSIIGFSSLVAGVSFASE 231


>gi|316936709|gb|ADU60349.1| capsid protein [Wolbachia phage WO]
          Length = 137

 Score = 37.3 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
               +  +++  +Q  VD  Y  F++L++ +R +  +K      G  + G +A ++GL D
Sbjct: 2   HMEPMTSESLGSLQKEVDRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 60

Query: 226 VV 227
            +
Sbjct: 61  GM 62


>gi|52843152|ref|YP_096951.1| hypothetical protein lpg2958 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630263|gb|AAU29004.1| transmembrane protein [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 501

 Score = 37.3 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 85/247 (34%), Gaps = 33/247 (13%)

Query: 6   KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-ELIERIERISRDD 64
           K ++T  + + L    ++    S         +  + I+G I  +  + +ER  + ++D 
Sbjct: 65  KLMQTSCIFIFLTLFLLIGLQTSFAA-----KIVELNIKGPIGPATVDYMERGIKSAQDA 119

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
               +++ + +PGG     ++    IQ        I                      +A
Sbjct: 120 DL--IVILIDTPGGL---YDSTRNIIQLFLLSDVPIVTYVSPTG----------ARAASA 164

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
            T L+ +  +    P  +                            + K    M++ V  
Sbjct: 165 GTYLMYASTIAAMAPGTQMGAASPVSLGTGFSEGEK----------DEKKKSTMENKVTH 214

Query: 185 SYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGV 242
                +R +++ R    D     +++G+  T  EA   G+++ +   ++++   ++ + V
Sbjct: 215 DAVATIRSLAQLRGRDPDFAEKAVTEGKSITANEALSKGVVNYIAKNRDDLLSQIHGIKV 274

Query: 243 DQSIRKI 249
            Q+ + I
Sbjct: 275 SQNNKTI 281


>gi|314936343|ref|ZP_07843690.1| glycine dehydrogenase (decarboxylating) [Staphylococcus hominis
           subsp. hominis C80]
 gi|313654962|gb|EFS18707.1| glycine dehydrogenase (decarboxylating) [Staphylococcus hominis
           subsp. hominis C80]
          Length = 450

 Score = 37.3 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 38  VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
           +  + + G I D ++L + I     DD   A+ V   +  G+    E I   I+ 
Sbjct: 184 IVEVDLNGTITDLEKLEQAI-----DDDTAAVAVQYPNFYGTIEDLEKIHSYIEN 233


>gi|251810952|ref|ZP_04825425.1| glycine dehydrogenase subunit 1 [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251805462|gb|EES58119.1| glycine dehydrogenase subunit 1 [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 448

 Score = 37.3 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 38  VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
           +  + ++G I D ++L + I     DD+  A+ V   +  GS    E I   I+ 
Sbjct: 184 IIEVDLKGTITDLEKLEQLI-----DDNTAAVAVQYPNFYGSIEDLEQINNYIKD 233


>gi|195117086|ref|XP_002003080.1| GI17722 [Drosophila mojavensis]
 gi|193913655|gb|EDW12522.1| GI17722 [Drosophila mojavensis]
          Length = 281

 Score = 37.3 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDV-VGGQEEVWQSLYA-LGVDQSIRKIKDWNPPK 256
              +    L+ GR++T  EA ++GL+D   G +EE  +     +G    +  I      +
Sbjct: 175 PRREAERALNQGRMFTTDEALQIGLVDEAAGTKEEALEKCAQFIGTFAKVNPIARALTKQ 234

Query: 257 NYWFCDLKNLSISSL 271
            +   +L+ L     
Sbjct: 235 QFRAAELEQLESERA 249


>gi|254523177|ref|ZP_05135232.1| peptidase S14, ClpP [Stenotrophomonas sp. SKA14]
 gi|219720768|gb|EED39293.1| peptidase S14, ClpP [Stenotrophomonas sp. SKA14]
          Length = 245

 Score = 37.3 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 59/193 (30%), Gaps = 37/193 (19%)

Query: 39  ARIAIRGQIE----DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
           A I + G I     D  E +        D     + + + SPGG  +A  ++  AI +  
Sbjct: 29  ATIYLHGVIGGWWGDIDETMFAQAMAGIDADV--IHLRIDSPGGDVFAARSMMTAIAQH- 85

Query: 95  NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154
            +  VI  +  +AASA   +  A + +  ++ +                          +
Sbjct: 86  -KATVIAHIDGLAASAMTGVCMACDKVEISQGAGFMIHN------------------AWT 126

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
           +              +      +  D    +     ++V             + +   +T
Sbjct: 127 ITVGNKADMIKTGELLAKIDAGLAGDYTRRTGKDQSQIVQW-----------MDEETWFT 175

Query: 215 GAEAKKVGLIDVV 227
             EAK+ G  D V
Sbjct: 176 ADEAKEHGFADEV 188


>gi|294101566|ref|YP_003553424.1| protein of unknown function DUF114 [Aminobacterium colombiense DSM
           12261]
 gi|293616546|gb|ADE56700.1| protein of unknown function DUF114 [Aminobacterium colombiense DSM
           12261]
          Length = 273

 Score = 36.9 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 70/177 (39%), Gaps = 9/177 (5%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+E++  I   S       +I    +PGG   A E I  A++K   +  V+   + M
Sbjct: 67  IEDSEEVLRAIRLTSEGTPIDLII---HTPGGLLLAAEQIAYALKKHPAKVTVVVPHYAM 123

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           +   G LI+ A++ I+  + +++G +            L  +         S ++     
Sbjct: 124 SG--GTLIALAADEILMDKHAVLGPVDPQIGQYPAASILRAVEEKP----VSEVEDTTLI 177

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
            ++V+ KAV+  +  V +     +     +           +     T  EA+ +GL
Sbjct: 178 LADVSRKAVKQTRSFVFNLLKDRMGDEKATELALVLTEGRWTHDYPITAEEAQALGL 234


>gi|259908701|ref|YP_002649057.1| ATP-dependent Clp protease proteolytic subunit [Erwinia pyrifoliae
           Ep1/96]
 gi|224964323|emb|CAX55832.1| ATP-dependent Clp protease proteolytic subunit [Erwinia pyrifoliae
           Ep1/96]
          Length = 282

 Score = 36.9 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/259 (10%), Positives = 73/259 (28%), Gaps = 40/259 (15%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL-IERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
              + +   ++   + G     + +   RI    R      + V+++SPGG  + G AI+
Sbjct: 35  KAAKSDENSISVFDVIGADWYDEGVTASRIAAALRSIGGEDVTVNINSPGGDMFEGLAIY 94

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             +++    K  +  +   A++A  +      + +     L+                  
Sbjct: 95  NLLRE-YEGKVTVKVLGLAASAASIIAMAGDEVQIGRAAFLMIHNC-------------- 139

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
                 +             +E+ P    M                     +       +
Sbjct: 140 -----WTFAMGNRHEMAKIAAELEPFDRAMNDIYG------------ARTGLDAATIETM 182

Query: 208 SDGRIWT-GAEAKKVGLIDVVGGQEEVWQS----LYALGVDQSIRKIKD--WNPPKNYWF 260
            +   +  G+E+ + G  D +   +E+         AL    ++    D   +  +    
Sbjct: 183 MNAETYIGGSESVEKGFADRLLTADEILDDDESPAAALRKIDAMLAKTDAPRSERRKLLK 242

Query: 261 CDLKNLSISSLLEDTIPLM 279
               +   +    + +P  
Sbjct: 243 ALTGSKPGAVATPEGMPGA 261


>gi|239813853|ref|YP_002942763.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Variovorax paradoxus
           S110]
 gi|239800430|gb|ACS17497.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Variovorax paradoxus
           S110]
          Length = 711

 Score = 36.9 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 7/89 (7%)

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS--LYALGVDQSIRKIKDWNPPKNYWF 260
              ++  GR     EA  +GL+D +G + +       YA  +  +   ++     +    
Sbjct: 159 ALELVLSGRHAGAKEALSLGLVDRLGNEADARAEGLAYAQELVAAKAPVR-----RTREA 213

Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
             L +   S    +        K +GL++
Sbjct: 214 GGLADKEASRAALEAARADTARKSRGLFS 242


>gi|206891158|ref|YP_002248435.1| membrane-bound serine protease [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206743096|gb|ACI22153.1| membrane-bound serine protease [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 436

 Score = 36.9 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 59/165 (35%), Gaps = 5/165 (3%)

Query: 14  MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIV 71
           +LSL+   +            +  +  + + G I    ++  I+ I++     +A A+I+
Sbjct: 11  LLSLIKYFICLLISFLSTSVYAKEIIVLTVNGVINPPHAEYTIKGIQKAHE-QNAEAVII 69

Query: 72  SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV--HEMAASAGYLISCASNIIVAAETSLV 129
            L +PGG   +  +I + +   +    V         A++  ++   A    +A  T++ 
Sbjct: 70  QLDTPGGLDTSMRSIIKEMLNSQIPIVVYVSPKGARAASAGAFITLAAHIAAMAPGTNIG 129

Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174
            +  V      +   + +   +        +  +     E   +A
Sbjct: 130 AAHPVAMGGEKMDKTMAEKITNDAVAYIKSIAKQRGRNIEWAEQA 174


>gi|34762173|ref|ZP_00143180.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27888134|gb|EAA25193.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 344

 Score = 36.9 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 13/104 (12%)

Query: 41  IAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
           I I GQI           + ++ + +E    D     + + ++SPGGS   G AI+ A++
Sbjct: 16  IQIYGQIGGFSWFDEPVSADQVYKELENFGND--IDTINLYINSPGGSVTEGCAIYSALK 73

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           + K  K     +    +S   +I+ A + I  +  + +     +
Sbjct: 74  RHKAVKN--VYIDGQCSSIASVIAMAGDKIAMSPVATMMIHNPI 115


>gi|319792645|ref|YP_004154285.1| ppic-type peptidyL-prolyl cis-trans isomerase [Variovorax paradoxus
           EPS]
 gi|315595108|gb|ADU36174.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
           EPS]
          Length = 638

 Score = 36.9 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 75/294 (25%), Gaps = 26/294 (8%)

Query: 2   EFVLK--KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----DSQELIE 55
           +F  K  KI   ++ L ++   V++             VA I   G I     D+Q  IE
Sbjct: 3   DFFRKYNKIVMIFLFLLIIPSFVLFGVERYQGSGRDEKVAHIE-GGDITKPEWDAQHRIE 61

Query: 56  --RIERISRDDSATALIVSLSSPGGSAYAGEAIFRA--IQKVKNRKPVITEVHEMAASAG 111
             RI +  +  +    ++   +        E + R   +     +  +      ++    
Sbjct: 62  TDRIRQ--QSPNVDPTVLDSDALR--YATLERMVRDRVLAAAAAKANMTVSEDRLSRIFA 117

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
                AS      +      + V  + P       +  +S + V         +P + V 
Sbjct: 118 QDPGLASFRTPDGKFDRETFLRVTGRTPEQYEAQVRADMSTQQVLLGVSGTALTPPALVA 177

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS---DGRIWTGAEAKKVGLIDVVG 228
                           +     +    +              +     +A    L+  + 
Sbjct: 178 ATVNAFYDRREIQVARFAPDGFASKVTVSDADIEAYYKDHTSQFQAPEQANIEYLVLDL- 236

Query: 229 GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282
                        V  +   +K +       F   +    S +L      M   
Sbjct: 237 -------DAAKKNVVVNEADLKTYYEQNTARFGTKEERRASHILITAPASMSAA 283


>gi|294783245|ref|ZP_06748569.1| ATP-dependent Clp protease [Fusobacterium sp. 1_1_41FAA]
 gi|294480123|gb|EFG27900.1| ATP-dependent Clp protease [Fusobacterium sp. 1_1_41FAA]
          Length = 344

 Score = 36.9 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 13/104 (12%)

Query: 41  IAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
           I I GQI           + ++ + +E    D     + + ++SPGGS   G AI+ A++
Sbjct: 16  IQIYGQIGGFSWFDEPVSADQVYKELENFGND--IDTINLYINSPGGSVTEGCAIYSALK 73

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           + K  K     +    +S   +I+ A + I  +  + +     +
Sbjct: 74  RHKAVKN--VYIDGQCSSIASVIAMAGDKIAMSPVATMMIHNPI 115


>gi|153864291|ref|ZP_01997239.1| nodulation efficiency family protein [Beggiatoa sp. SS]
 gi|152146213|gb|EDN72760.1| nodulation efficiency family protein [Beggiatoa sp. SS]
          Length = 199

 Score = 36.9 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 3/90 (3%)

Query: 40  RIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I+G I    +  +   +E    +     +++ + +PGG   A   I +AI       
Sbjct: 30  VLEIKGAIGPATADYIKRGLEEAREN-RVNVIVLQMDTPGGLDMAMRDIVQAIIASPIPV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETS 127
                     A++       ++ + A    
Sbjct: 89  VTYVSPSGARAASAGTYILYASHVAAMAPG 118


>gi|242242808|ref|ZP_04797253.1| glycine dehydrogenase subunit 1 [Staphylococcus epidermidis W23144]
 gi|242233709|gb|EES36021.1| glycine dehydrogenase subunit 1 [Staphylococcus epidermidis W23144]
 gi|319400875|gb|EFV89094.1| glycine cleavage system P-family protein [Staphylococcus
           epidermidis FRI909]
          Length = 448

 Score = 36.9 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 38  VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
           +  + ++G I D ++L + I     DD+  A+ V   +  GS    E I   I+ 
Sbjct: 184 IIEVDLKGTITDLEKLEQLI-----DDNTAAVAVQYPNFYGSIEDLEQINNYIKD 233


>gi|152983495|ref|YP_001345948.1| putative lipoprotein [Pseudomonas aeruginosa PA7]
 gi|150958653|gb|ABR80678.1| lipoprotein, putative [Pseudomonas aeruginosa PA7]
          Length = 443

 Score = 36.9 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 33 DNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90
            S  V  +++ G I    +  L+  I+R + D  A  +++ + +PGG   +   I +AI
Sbjct: 22 AASATVRVLSVDGAIGPASADYLVRGIQRAAED-GAQLVVLEMDTPGGLDPSMRRIVKAI 80

Query: 91 QK 92
            
Sbjct: 81 LA 82


>gi|160331468|ref|XP_001712441.1| clpP2 [Hemiselmis andersenii]
 gi|159765889|gb|ABW98116.1| clpP2 [Hemiselmis andersenii]
          Length = 233

 Score = 36.9 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 60/186 (32%), Gaps = 31/186 (16%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            I  +I +  ++I  +  +  +D++  + + ++SPGGS  +G A++  I+ +K+    I 
Sbjct: 73  EIDDEIAN--QIIAVMLYLDSEDNSKPIYLYINSPGGSVISGLAMYDTIRHIKSEVVTIN 130

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                + ++  L +      +A   S +     +         +      I  +      
Sbjct: 131 VGLAASMASFILAAGEKGKRLALPHSRIMIHQPMGGAQGQASDIKVEAQQILRI------ 184

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221
                         + + +            V             +      +  EA + 
Sbjct: 185 -------------RKSLTEDYAQMTGRPYEKV----------LQDMDRDNFMSAYEAVEY 221

Query: 222 GLIDVV 227
           GLID V
Sbjct: 222 GLIDRV 227


>gi|256544468|ref|ZP_05471841.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerococcus
           vaginalis ATCC 51170]
 gi|256399793|gb|EEU13397.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerococcus
           vaginalis ATCC 51170]
          Length = 195

 Score = 36.9 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  S  +I ++  +   D    +   ++SPGG   AG AI+  +  +K   
Sbjct: 33  IIFLTGPVEDGVSDIIIAQLLFLESQDPNKDIQFYINSPGGVVTAGLAIYDTMNYIKPDV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S A     +   S +                            
Sbjct: 93  STICIGQAASMGAVLLSSGAKGKRFSLPNSNILIHQPSGGAQGQ---------------- 136

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGA 216
                            +Q+  + +        ++++++     +K    +D        
Sbjct: 137 --------------ASDIQIQAEQILKMKKRLNKILADNTGQSIEKIQKDTDRDFAMDAY 182

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 183 EAKEYGLIDKV 193


>gi|192289841|ref|YP_001990446.1| enoyl-CoA hydratase [Rhodopseudomonas palustris TIE-1]
 gi|192283590|gb|ACE99970.1| Enoyl-CoA hydratase/isomerase [Rhodopseudomonas palustris TIE-1]
          Length = 282

 Score = 36.9 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 71/260 (27%), Gaps = 29/260 (11%)

Query: 31  VEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAY 81
           VE   P VARI +     D++         +L    +   +DDS   +I++ + P  SA 
Sbjct: 9   VERPDPAVARIVMNRP--DARNAQNLQMTYDLNAAFDDAVQDDSVKVIILAGAGPHFSAG 66

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
             +       +     P +           +        I    T    ++         
Sbjct: 67  H-DLRATTKNEAGIDFPPVGAWGGFREPGAHGRMAREQEIYLQITRRWRNLAKPTIAEVH 125

Query: 142 KPFLD---KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
              +     L  +   + ++       P   +               +     L      
Sbjct: 126 GKCIAGGLMLAWACDLIIAADSAEFCDPVVTM--------GVCGVEWFVHPWEL------ 171

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
            P     +L     W+  EA ++G+++ V    E+     AL    + +        K  
Sbjct: 172 GPRKAKELLFTADSWSAQEAHQLGMVNHVVPATELSAFAMALAQRIAAKPSFALKMTKEA 231

Query: 259 WFCDLKNLSISSLLEDTIPL 278
               +      + ++    L
Sbjct: 232 VNRSVDIQGQPAAIDQAFAL 251


>gi|91775762|ref|YP_545518.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Methylobacillus flagellatus KT]
 gi|116243149|sp|Q1H1G0|CLPP_METFK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|91709749|gb|ABE49677.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Methylobacillus flagellatus KT]
          Length = 213

 Score = 36.9 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 58/198 (29%), Gaps = 34/198 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D+    ++ ++  +  ++    +   ++SPGGS  AG  I+  +Q VK   
Sbjct: 45  IIFLVGPVNDATANLVVAQLLFLEAENPDKDIYFYINSPGGSVTAGMGIYDTMQFVKPDV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A         S V     L  +      ++           
Sbjct: 105 STLCVGQAASMGALLLAAGAQGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKE------ 158

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                   +         +++     P +K           +  
Sbjct: 159 ------------------------ILFLREKLNHILASHTGQPVEKIALDTDRDNFMSAE 194

Query: 217 EAKKVGLIDV-VGGQEEV 233
           ++   G++D  +  + + 
Sbjct: 195 QSVAYGIVDKVIASRADA 212


>gi|242241142|ref|YP_002989323.1| multifunctional fatty acid oxidation complex subunit alpha [Dickeya
           dadantii Ech703]
 gi|242133199|gb|ACS87501.1| fatty oxidation complex, alpha subunit FadB [Dickeya dadantii
           Ech703]
          Length = 730

 Score = 36.9 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
           +   +++ G+    AEA KVGL+D +   +++  +           K+ DW   +     
Sbjct: 163 NALEIITAGKELNAAEALKVGLVDAIVTDDKLISAALQTLRLAIEGKL-DWQARRRPKLQ 221

Query: 262 DLKNLSISSLLEDTIPLMKQTKVQG 286
            L+   + + +          ++ G
Sbjct: 222 PLRIGRVEAAMSFATARALVAQLAG 246


>gi|207728251|ref|YP_002256645.1| membrane-bound serine protease (clpp class) protein [Ralstonia
           solanacearum MolK2]
 gi|206591497|emb|CAQ57109.1| membrane-bound serine protease (clpp class) protein [Ralstonia
           solanacearum MolK2]
          Length = 467

 Score = 36.9 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/213 (10%), Positives = 62/213 (29%), Gaps = 4/213 (1%)

Query: 19  TLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSP 76
               V   WS      +  V  + + G I    +  ++  ++   + +    +++ + +P
Sbjct: 14  LAASVAAVWSGLALAAAAPVMVLPLTGAIGPASAAYVVHGLDVARK-EGMQLVVLQMDTP 72

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           GG   +   I +AI                 A++       ++ I A   +         
Sbjct: 73  GGLDASMRQIIQAILASPVPVAGYVAPGGARAASAGTYILYASHIAAMAPATNLGAASPV 132

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
                         +  +          S  +    +     + + D++ +         
Sbjct: 133 AIGIGGHAPAGPTPANPTPTPGDTAKPASAPAASGNEDTLARKQMHDAAAYIRGLAQLRG 192

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229
           RN  + +   + +    +  EA    +ID++  
Sbjct: 193 RNADWGE-RAVREAVSLSADEAATQRVIDLIAT 224


>gi|315033068|gb|EFT45000.1| Clp protease [Enterococcus faecalis TX0017]
          Length = 239

 Score = 36.9 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 64/195 (32%), Gaps = 15/195 (7%)

Query: 40  RIAIRGQIE----DSQELIER--IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
            + + G I        ++I+   I     D     + + L+SPGG  + G  I+  ++  
Sbjct: 21  VLTLSGNIRKKYWSDDDVIDAKSIRETL-DGVTDDITIKLNSPGGDVFEGVEIYNYLKDH 79

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG----VLFQYPYVKPFLDKLG 149
            ++  V      +AASA   I  A++  +    + V               ++  L+ L 
Sbjct: 80  PSKVTVEV--TGVAASAATFILSAADEAIMNVGTSVMIHEASTFTWGNKQDIQKTLNALE 137

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW-FVRLVSESRNIPYDKTLVLS 208
               S+ S   +       ++     +      + +  + F   V ++       +    
Sbjct: 138 TIDDSILSIYSQKTGQTTDQLETWMREEKWFTAEEAVEYGFATEVKKNTEKNSTDSKENI 197

Query: 209 DGRIWTG-AEAKKVG 222
              +    AEA  + 
Sbjct: 198 AEMVKNAVAEAMSLN 212


>gi|22537725|ref|NP_688576.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           agalactiae 2603V/R]
 gi|25011674|ref|NP_736069.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           agalactiae NEM316]
 gi|76787269|ref|YP_330203.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           agalactiae A909]
 gi|76799155|ref|ZP_00781338.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae 18RS21]
 gi|77407096|ref|ZP_00784096.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae H36B]
 gi|77411373|ref|ZP_00787720.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae CJB111]
 gi|60389783|sp|Q8DYA5|CLPP_STRA5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|60389787|sp|Q8E3X0|CLPP_STRA3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|109878422|sp|Q3JZV0|CLPP_STRA1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|22534615|gb|AAN00449.1|AE014264_4 ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae 2603V/R]
 gi|22091680|emb|CAC88188.1| ClpP serine protease [Streptococcus agalactiae]
 gi|24413214|emb|CAD47293.1| ATP-dependent CLP protease proteolytic subunit [Streptococcus
           agalactiae NEM316]
 gi|76562326|gb|ABA44910.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae A909]
 gi|76585485|gb|EAO62060.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae 18RS21]
 gi|77162546|gb|EAO73510.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae CJB111]
 gi|77174291|gb|EAO77160.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae H36B]
          Length = 196

 Score = 36.9 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 47/155 (30%), Gaps = 2/155 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 27  IIMLTGQVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +K+
Sbjct: 87  QTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKT 146

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                +    +              D        L
Sbjct: 147 RHTLEKILADNSGQSIEKVHDDAERDRWMSAQETL 181


>gi|325106285|ref|YP_004275939.1| Enoyl-CoA hydratase/isomerase [Pedobacter saltans DSM 12145]
 gi|324975133|gb|ADY54117.1| Enoyl-CoA hydratase/isomerase [Pedobacter saltans DSM 12145]
          Length = 254

 Score = 36.9 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 29/80 (36%)

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
                + +G+++T  EAK++GLID     + +  +      +        W   K+    
Sbjct: 154 KAYQSILEGKLFTVEEAKQIGLIDASANIDSLMTAAEKKIQEYLQYDYTTWQQSKSNLRK 213

Query: 262 DLKNLSISSLLEDTIPLMKQ 281
            L         E    +++Q
Sbjct: 214 SLIKKVSEDQSETLRKVLEQ 233


>gi|148240099|ref|YP_001225486.1| ATP-dependent Clp protease-like protein [Synechococcus sp. WH 7803]
 gi|147848638|emb|CAK24189.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           WH 7803]
          Length = 223

 Score = 36.9 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 63/186 (33%), Gaps = 22/186 (11%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           I+ ++ +I ++  +  D+    +   ++S G S Y G+AI    +        I +    
Sbjct: 49  IDVTELIIAQLLYLEFDNPDKPIYFYINSTGTSWYTGDAIGFETEAFA-----ICDTLRY 103

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                + I     +  AA     G+ G     P+    L +     +             
Sbjct: 104 VKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHASIVLHQPRSGARG------------ 151

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLID 225
                   +Q+    V  +    + ++S +     ++    SD   + T  +AK+ GLID
Sbjct: 152 ----QATDIQIRAQEVLHNKRAMLEILSTNTGRSVEELSKDSDRMSYLTPEQAKEYGLID 207

Query: 226 VVGGQE 231
            V    
Sbjct: 208 RVLTSR 213


>gi|332703911|ref|ZP_08423999.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554060|gb|EGJ51104.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 206

 Score = 36.9 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/188 (11%), Positives = 55/188 (29%), Gaps = 33/188 (17%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            I   I     +  ++  +  +D    + + ++SPGGS  AG AI+  +           
Sbjct: 37  PIDDHIAGL--ICAQLLFLESEDPDKEIYMYINSPGGSVTAGMAIYDTM----------G 84

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
            +    ++     + +    + +  +      +      +   +         +      
Sbjct: 85  YISCPVSTLCIGQAASMGAFLLSSGTKGMRFSLPNSRILIHQPMGGFQGQASDIDIHA-- 142

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220
                               +        R+++E+      +    +D   + +  EA +
Sbjct: 143 ------------------REILRMRADLNRILAENTGKDLAQIERDTDRDYFMSAQEALE 184

Query: 221 VGLIDVVG 228
            GLID + 
Sbjct: 185 YGLIDKIM 192


>gi|254446451|ref|ZP_05059927.1| Clp protease [Verrucomicrobiae bacterium DG1235]
 gi|198260759|gb|EDY85067.1| Clp protease [Verrucomicrobiae bacterium DG1235]
          Length = 182

 Score = 36.9 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 57/196 (29%), Gaps = 35/196 (17%)

Query: 35  SPHVARI--AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
              +  I   I  +I ++  +I ++  +  +D    + V ++SPGGS  +G AI+  +  
Sbjct: 9   KDRIVFIGTPINDEIANA--IIAQLLFLQMEDPKKDINVYINSPGGSVTSGMAIYDTMNF 66

Query: 93  VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           +             +     L         A   S V                       
Sbjct: 67  LSCEVSTWCIGMAASMGTILLAGGTKGKRYALPNSRVMIHQPSGGAGGQ----------- 115

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
                                 + +    +        ++++E      ++    SD   
Sbjct: 116 -------------------ASDISIQAKEIIRWRETLNKVLAEKTGQSVERIQKDSDRDY 156

Query: 213 W-TGAEAKKVGLIDVV 227
           W T  EA + G+ID V
Sbjct: 157 WMTSQEALEYGVIDKV 172


>gi|194859392|ref|XP_001969365.1| GG10065 [Drosophila erecta]
 gi|190661232|gb|EDV58424.1| GG10065 [Drosophila erecta]
          Length = 280

 Score = 36.9 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 16/96 (16%)

Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQS--------------LYALGVD 243
                   L+ GR++T  EA + GL+D +   +EE  +                  L   
Sbjct: 174 PKRLAERALTQGRMFTTQEAFEAGLVDEIASTKEEAVEKCAAFIGTFAKVNPLARGLTKL 233

Query: 244 Q-SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278
           Q     I+++   +     D   L+ S+ ++  +  
Sbjct: 234 QFRADNIREFEEIREKDVADFAALASSAEVQKVMGT 269


>gi|221209484|ref|ZP_03582465.1| NfeD family protein [Burkholderia multivorans CGD1]
 gi|221170172|gb|EEE02638.1| NfeD family protein [Burkholderia multivorans CGD1]
          Length = 520

 Score = 36.9 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 60/191 (31%), Gaps = 3/191 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I    +  ++  ++R +R+ +  A+ + L +PGG   +   I +AI       
Sbjct: 58  VIPLNGAIGPACADFVVRSLQRAAREHAPLAI-LQLDTPGGLDTSMRQIIKAILGSPVPV 116

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                     A++       ++ I A             Q             +  S  +
Sbjct: 117 AAFVAPGGARAASAGTYIVYASHIAAMAPGTNLGAASPVQLGVGGGTPAAPPQAPTSRGA 176

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
           SP  A  +P +         ++     +  +   L              + +    +  E
Sbjct: 177 SPSSASGTPTALPADTQSTEIRKATQDAAAYLRGLAQLRGRNAEWAERAVREAVSLSANE 236

Query: 218 AKKVGLIDVVG 228
           A+   ++D++ 
Sbjct: 237 ARAQRIVDLIA 247


>gi|189202390|ref|XP_001937531.1| carnitinyl-CoA dehydratase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187984630|gb|EDU50118.1| carnitinyl-CoA dehydratase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 281

 Score = 36.9 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 14/99 (14%)

Query: 209 DGRIWTGAEAKKVGLIDVV-----GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
            GR  T   AK++ L++ +     G  +E  +    +        I      +  W    
Sbjct: 180 TGRPITAQRAKELNLVNRISSTPEGVVDEALKLANEIAAISPDSAIVTRAALREAWETGS 239

Query: 264 KNLSISSLLEDTIPLM--KQTKVQGLWAV-------WNP 293
              +    +E     +   +  ++GL A        W P
Sbjct: 240 VERATQLTMEQYNGRLNTSENALEGLNAFAEKRKPNWKP 278


>gi|50914353|ref|YP_060325.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS10394]
 gi|50903427|gb|AAT87142.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS10394]
          Length = 221

 Score = 36.9 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 85/253 (33%), Gaps = 48/253 (18%)

Query: 40  RIAIRGQIE--DSQELIE-----------RIERISRDDSATALIVSLSSPGGSAYAGEAI 86
           RI ++G +   +SQE+ +            IE++  D+S   +I+ ++S GG    G  I
Sbjct: 4   RINLKGPLIANNSQEVYDYYGMEAASAKSIIEKLPEDNS--DIILEVNSNGGLVTVGSEI 61

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
           + A++  K +          +A++  ++     ++      +V                 
Sbjct: 62  YTALRNYKGKVTAEITGMAASAASVAVMGVDKVVMSPTAQMMVH---------------- 105

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
                         KA  +  +  +    +    +  S        V+++     +   +
Sbjct: 106 --------------KASFNWVAGNSDDLDKASNALKSSDKAIVNAYVAKTGLPEDEIMEL 151

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266
           + +    +  +A + G  D V    E   S+           I D+   ++    ++ N+
Sbjct: 152 MKNETFMSAQDAVEKGFADEVMSF-EAVASI--DNQMLPQAVIDDYYANRSKRKQEISNM 208

Query: 267 SISSLLEDTIPLM 279
            +    E+ +  +
Sbjct: 209 LLEIEKEEILQGL 221


>gi|30250389|ref|NP_842459.1| hypothetical protein NE2468 [Nitrosomonas europaea ATCC 19718]
 gi|30181184|emb|CAD86380.1| Protein of unknown function DUF107 [Nitrosomonas europaea ATCC
           19718]
          Length = 417

 Score = 36.9 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 58/202 (28%), Gaps = 13/202 (6%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
              +   + R +    A  +I+ + +PGG   +   I + I                 A+
Sbjct: 2   QDYIQRGLSRATE-RRAQVIILQIDTPGGLDVSMRKIIQEIIASPVPVVSFVAPGGARAA 60

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           +            +   ++  +  +    P     L        S        +      
Sbjct: 61  SAGTYIL----YASHIAAMAPATNLGAATPVKMNTLASKPEVPDSQPKGEQPDKSDSQDA 116

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG- 228
           +  K +      +              RN  + +   + +G   T AEA    +ID+V  
Sbjct: 117 MTVKVINDAVAYIRGLAQ------MRGRNADWAE-QAVREGVSLTAAEALDKNVIDLVAD 169

Query: 229 GQEEVWQSLYALGVDQSIRKIK 250
              ++   +    VD S  K+K
Sbjct: 170 DVSDLLARIDGRTVDLSGEKVK 191


>gi|319791569|ref|YP_004153209.1| 3-hydroxyacyL-CoA dehydrogenase NAD-binding protein [Variovorax
           paradoxus EPS]
 gi|315594032|gb|ADU35098.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein [Variovorax
           paradoxus EPS]
          Length = 711

 Score = 36.9 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
              ++  GR     EA  +GL+D +G + +       L   + +   K     +      
Sbjct: 159 ALELMLSGRHAGAKEALSLGLVDRLGTEADARAE--GLAYAEELVAAKA-PVRRTREAAG 215

Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWA 289
           L +   S    +        K +GL++
Sbjct: 216 LADKEASRAALEAARTDTAKKSRGLFS 242


>gi|288932262|ref|YP_003436322.1| enoyl-CoA hydratase/isomerase [Ferroglobus placidus DSM 10642]
 gi|288894510|gb|ADC66047.1| Enoyl-CoA hydratase/isomerase [Ferroglobus placidus DSM 10642]
          Length = 246

 Score = 36.9 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
            V+  G  ++  +A ++G+ID V  +EE+ +            K+K  N P   +    K
Sbjct: 154 DVVYGGDFYSAEKALELGIIDGVFSKEELVEKSIE--------KVKSLNHPAEAFSAVKK 205

Query: 265 NLSISSLLEDTIPLMKQTKVQGLWAVW 291
           N ++   +++    + +  V+   ++W
Sbjct: 206 NRTLK--VKEECLALLEKDVETFTSLW 230


>gi|171690062|ref|XP_001909963.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944986|emb|CAP71097.1| unnamed protein product [Podospora anserina S mat+]
          Length = 276

 Score = 36.9 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 21/43 (48%)

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            ++ + + ++G E  K GL+D  GG ++  + +    +    +
Sbjct: 176 DLVLEAKRFSGEEGVKAGLVDRTGGLDQALELIKERKLTNKAK 218


>gi|90412623|ref|ZP_01220625.1| hypothetical membrane protein [Photobacterium profundum 3TCK]
 gi|90326431|gb|EAS42843.1| hypothetical membrane protein [Photobacterium profundum 3TCK]
          Length = 489

 Score = 36.9 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 7/82 (8%)

Query: 11 RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATA 68
          +++ L +  +T++  S S+  +D    V  + I G I    S  +   IE+   D +A+ 
Sbjct: 2  KFLSLCVFVITLLLHSISALADD----VWVVEINGGIGPATSDFVAREIEQAQID-NASL 56

Query: 69 LIVSLSSPGGSAYAGEAIFRAI 90
          +++ +++PGG   +   I RAI
Sbjct: 57 VVLKMNTPGGLDTSMRDIIRAI 78


>gi|319745540|gb|EFV97842.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           agalactiae ATCC 13813]
          Length = 200

 Score = 36.9 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 47/155 (30%), Gaps = 2/155 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 31  IIMLTGQVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 90

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +K+
Sbjct: 91  QTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKT 150

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
                +    +              D        L
Sbjct: 151 RHTLEKILADNSGQSIEKVHDDAERDRWMSAQETL 185


>gi|296271423|ref|YP_003654055.1| enoyl-CoA hydratase/isomerase [Thermobispora bispora DSM 43833]
 gi|296094210|gb|ADG90162.1| Enoyl-CoA hydratase/isomerase [Thermobispora bispora DSM 43833]
          Length = 225

 Score = 36.9 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                ++ GR + G EA+ +GL+D +   + +  S  AL
Sbjct: 150 AAIASMTTGRRFGGPEARDLGLVDDIADLDRLIASADAL 188


>gi|227878727|ref|ZP_03996639.1| S14 family endopeptidase ClpP [Lactobacillus crispatus JV-V01]
 gi|227861696|gb|EEJ69303.1| S14 family endopeptidase ClpP [Lactobacillus crispatus JV-V01]
          Length = 230

 Score = 36.9 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 46/177 (25%), Gaps = 33/177 (18%)

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116
           I       S   ++V ++S GG   AG  I+  ++K             +          
Sbjct: 34  IRDALNQASGQDIVVEINSRGGYVDAGSEIYTELKK---------YQGNIDIQIVGYACS 84

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
           A++ I  A  ++  S              D     + S                      
Sbjct: 85  AASWIALAGDTVEMSPTAQLMIHRASGGADGNVDDLASAMQG------------------ 126

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEE 232
                +D      V L ++       +   L     W     A   G +D +  ++E
Sbjct: 127 -----LDQMDQALVDLYAKRTGKSAQEVYQLMAKESWMNAKTAVANGFVDSIMFEDE 178


>gi|115399750|ref|XP_001215464.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114191130|gb|EAU32830.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 244

 Score = 36.9 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 20/36 (55%)

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
           L +G  WTG EA + G++D +   +++++    L  
Sbjct: 164 LLEGHRWTGREALQDGIVDAIAEPDDMFRVALELAN 199


>gi|113868725|ref|YP_727214.1| S49 family serine protease [Ralstonia eutropha H16]
 gi|113527501|emb|CAJ93846.1| Membrane-bound serine protease, S49 family [Ralstonia eutropha H16]
          Length = 486

 Score = 36.9 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 61/196 (31%), Gaps = 20/196 (10%)

Query: 39  ARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
             I ++G +    +  ++  +ER      A  +++ + +PGG   +   I +AI      
Sbjct: 47  YVIPLKGAVSPASASFILRSMERARA-GGAQLVVLEMDTPGGLDASMREIIQAILASPIP 105

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLV----GSIGVLFQYPYVKPFLDKLGVSI 152
                      A++       ++ I A            + V    P     L       
Sbjct: 106 VASYVYPGGARAASAGTYILYASHIAAMAPGTNLGAATPVQVGIGGPQKPEALPGA---- 161

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
                   K   +P SE         + + D+S +         RN  + +   + +   
Sbjct: 162 --------KPASTPASEPARADAMERKQMHDASAYIRGLAQLRGRNAEWAE-RAVRESVS 212

Query: 213 WTGAEAKKVGLIDVVG 228
            +  EA    ++D+V 
Sbjct: 213 LSADEALAQRVVDLVA 228


>gi|297619933|ref|YP_003708038.1| hypothetical protein Mvol_1409 [Methanococcus voltae A3]
 gi|297378910|gb|ADI37065.1| protein of unknown function DUF114 [Methanococcus voltae A3]
          Length = 293

 Score = 36.9 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+E++  I     +     ++    +PGG   A E I  A+ + K +  VI   + M
Sbjct: 68  IEDSEEVLRAIRLTPENMPIDLIL---HTPGGLVLASEQIASALMEHKAKTTVIIPHYAM 124

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           +   G LI+ A++ I+  + +++G +            L  L    
Sbjct: 125 SG--GSLIALAADEIIMDKNAVMGPVDPQIGQYPAASILSVLDKKY 168


>gi|257870381|ref|ZP_05650034.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257804545|gb|EEV33367.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 238

 Score = 36.9 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 66/204 (32%), Gaps = 40/204 (19%)

Query: 30  HVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           +   +  H+  + + G I      D + +  ++ R + D     +++ L+S GG  + G 
Sbjct: 17  NESKDGKHI--LTLSGVIQKRYWSDDKYIDAKLIRDNLDGVTDDVVIRLNSNGGDVFQGV 74

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            I+  ++   +   V                     ++A   S    I        +   
Sbjct: 75  EIYNYLKNHSSHITV--------------------EVMATAASAATFICAGADEVIMNVG 114

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
              +    ++V               N   ++     +++     + + ++      D+ 
Sbjct: 115 TSFMIHEAETVGWG------------NKTDIKKTLQALETIDDSILSIYADKTGQSKDQI 162

Query: 205 LV-LSDGRIWTGAEAKKVGLIDVV 227
              +++ R +T  EA K G  D V
Sbjct: 163 TTWINEARWFTADEAVKFGFADSV 186


>gi|88809169|ref|ZP_01124678.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 7805]
 gi|88787111|gb|EAR18269.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 7805]
          Length = 223

 Score = 36.9 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 62/186 (33%), Gaps = 22/186 (11%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           I+ ++ +I ++  +  DD    +   ++S G + Y G+AI    +        I +    
Sbjct: 49  IDVTELIIAQLLYLEFDDPDKPIYFYINSTGTTWYTGDAIGFETEAFA-----ICDTLRY 103

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                + I     +  AA     G+ G     P+    L +     +             
Sbjct: 104 VKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHSSIVLHQPRSGARG------------ 151

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLID 225
                   +Q+    V  +    + +++ +     ++    SD   + T  +AK  GLID
Sbjct: 152 ----QATDIQIRAKEVLHNKRAMLEILAANTGRSVEELSKDSDRMSYLTPDQAKDYGLID 207

Query: 226 VVGGQE 231
            V    
Sbjct: 208 RVLTSR 213


>gi|316936721|gb|ADU60355.1| capsid protein [Wolbachia phage WO]
          Length = 137

 Score = 36.9 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225
               +  ++++ +Q  VD  Y  FV+L++ +R +  +K      G  + G  A ++GL D
Sbjct: 2   HMEPMTSESLESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYF-GERAIEIGLAD 60

Query: 226 VV 227
            +
Sbjct: 61  GM 62


>gi|209486280|gb|ACI48592.1| capsid protein [Wolbachia phage WO]
          Length = 99

 Score = 36.9 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
              V+L++ +R +  +K      G  + G +A ++GL D V    E    
Sbjct: 1   EMLVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFINK 49


>gi|148544339|ref|YP_001271709.1| peptidase S14, ClpP [Lactobacillus reuteri DSM 20016]
 gi|148531373|gb|ABQ83372.1| peptidase S14, ClpP [Lactobacillus reuteri DSM 20016]
          Length = 243

 Score = 36.9 bits (83), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 56/200 (28%), Gaps = 46/200 (23%)

Query: 41  IAIRGQIE--DSQELIERI----------ERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           I ++G I   D  ++ + +          E +  +     + V ++S GGS +A   I+ 
Sbjct: 4   INVKGVIVSNDDADIYDWLGYDCVSPNQVEDVLNNSD-EDIEVDIASGGGSVFAASEIYT 62

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
            ++             ++  +   L + A+++I  A   +  S                 
Sbjct: 63  MLKA---------YSGKVVVNIQGLAASAASVIAMAGDEINMSPTSQMMIHKAS------ 107

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
                ++              ++                  V        +  D  L L 
Sbjct: 108 -----TISMGNADDFAHDSKMLD------------VMDQSIVNAYEAKTGMDRDDILQLM 150

Query: 209 DGRIW-TGAEAKKVGLIDVV 227
               W T  +A   G  D +
Sbjct: 151 ANETWMTAQDAVDKGFADNI 170


>gi|256843130|ref|ZP_05548618.1| ATP-dependent Clp protease, proteolytic subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256614550|gb|EEU19751.1| ATP-dependent Clp protease, proteolytic subunit [Lactobacillus
           crispatus 125-2-CHN]
          Length = 239

 Score = 36.5 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 83/265 (31%), Gaps = 59/265 (22%)

Query: 41  IAIRGQIEDSQE----------------LIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           I ++G + D+                  + + +++   D+    + + ++S GG  +A  
Sbjct: 7   IDVKGDVVDNDTGQFFDYWGMQCVSPQMVKDSLDKAQGDE----VELDIASYGGDVFAAS 62

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            I+  I +   +  V   +  MAASA  +I+ A + +V +    +               
Sbjct: 63  EIYSMINQYSGK--VTGVIQGMAASAATIIAEACDHLVISPAGQMMIHKASTAGAGNS-- 118

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-NIPYDK 203
                                                V ++    +  + ++R     ++
Sbjct: 119 -----------------------------DDFTHTAGVLNTTDRTIAGIYQNRTGKSEEE 149

Query: 204 TLVLSDGRIW-TGAEAKKVGLIDVVGGQEE----VWQSLYALGVDQSIRKIKDWNPPKNY 258
            L L     + T  +A + G  D +  + +    V   L+ +    +I+K  +    +  
Sbjct: 150 VLNLMKQETYLTAKDAVEQGFADEIMKKSDKVPQVVNGLHEIPSKDAIKKFMNLIKNQKS 209

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTK 283
              D K     +L    + + K   
Sbjct: 210 TVSDSKRSENDALFNAKLAIFKGES 234


>gi|327393420|dbj|BAK10842.1| putative peptidase S14 ClpP [Pantoea ananatis AJ13355]
          Length = 282

 Score = 36.5 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 77/248 (31%), Gaps = 40/248 (16%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL-IERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
              + +   ++   + G       +   RI    R  +   + V+++SPGG  + G AI+
Sbjct: 35  KAAKPDENSISVFDVIGADYWGDGVTASRIAGALRSMNGADVTVNINSPGGDMFEGLAIY 94

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             +++    K  +  +   A++A  +     +I +     L+                  
Sbjct: 95  NLLRE-YEGKVTVKVLGLAASAASIIAMAGDDIQIGRGAFLMIHNC-------------- 139

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
                               +++ P    M       S             +  +    +
Sbjct: 140 -----WVYAMGNRHDLSQIAADMEPFDKAMGDIYSYRS------------GLSAEDIAEM 182

Query: 208 SDGRIWT-GAEAKKVGLIDVVGGQEEVWQS----LYALGVDQSIRKIKDWNPPKNYWFCD 262
            DG  +  G++A   G  D +   +E+         AL    ++  +     P++     
Sbjct: 183 MDGETYIGGSDAVDKGFADRLLSADEISDDDDSPAAALRKLDAL--LAKAETPRSERRKL 240

Query: 263 LKNLSISS 270
           LK LS S+
Sbjct: 241 LKALSGST 248


>gi|317970580|ref|ZP_07971970.1| ATP-dependent Clp protease-like protein [Synechococcus sp. CB0205]
          Length = 225

 Score = 36.5 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 63/186 (33%), Gaps = 22/186 (11%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           I+ ++ +I ++  +  D+    +   ++S G S Y+G+AI    +        I  V   
Sbjct: 49  IDVTELIIAQLLYLEFDNPEKPIFFYINSTGTSWYSGDAIGFETEAF-AIADTIRYVKPP 107

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
             +     +  +  ++ +  +           P+    L +     +             
Sbjct: 108 VHTICIGQAMGTAAMILSAGTKGH----RAALPHASIVLHQPRSGARG------------ 151

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLID 225
                   +Q+    V  +    + +++ +     ++    SD   + T  +A + GLID
Sbjct: 152 ----QASDIQIRAKEVLHNKRTMLEMLAANTGKSTEELSKASDRMTYLTAEQAVEFGLID 207

Query: 226 VVGGQE 231
            V   +
Sbjct: 208 RVLTSQ 213


>gi|150376656|ref|YP_001313252.1| hypothetical protein Smed_4519 [Sinorhizobium medicae WSM419]
 gi|150031203|gb|ABR63319.1| protein of unknown function DUF107 [Sinorhizobium medicae WSM419]
          Length = 452

 Score = 36.5 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 23 VYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSA 80
           +    S           + + G I    ++ +   + R   D     +++ + +PGG  
Sbjct: 14 AFMLPVSPAPAAERKAIVLHVNGAISPATAEYVTRGLRRAR-DRGVALVVLQMDTPGGLD 72

Query: 81 YAGEAIFRAI 90
           +   I RAI
Sbjct: 73 TSMREIIRAI 82


>gi|88763685|gb|ABD49512.1| capsid protein [Wolbachia phage WO]
          Length = 118

 Score = 36.5 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  F++L++ +R    +K      G  + G +A ++G+ D V    E   +  +  V  +
Sbjct: 13  YEMFLQLIARNRGPSIEKIRSTEAGLYF-GEKAVEIGVADGVTTFFEFINNHKSRSVSMT 71

Query: 246 IRKIKDWNPPK 256
             ++ +     
Sbjct: 72  TNELTEEGYEN 82


>gi|88763670|gb|ABD49505.1| capsid protein [Wolbachia phage WO]
          Length = 117

 Score = 36.5 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Y  FV+L++ +RN   +       G  + G  A +VGL D +    E    
Sbjct: 2   YEMFVQLIARNRNFSIEVIKSTEAGLYF-GENAIEVGLADGITTFCEFINK 51


>gi|88763672|gb|ABD49506.1| capsid protein [Wolbachia phage WO]
          Length = 117

 Score = 36.5 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Y  FV+L++ +RN   +       G  + G  A +VGL D +    E    
Sbjct: 2   YEMFVQLIARNRNFSIEVIKSTEAGLYF-GENAIEVGLADGITTFCEFINK 51


>gi|159903385|ref|YP_001550729.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9211]
 gi|159888561|gb|ABX08775.1| Clp protease subunit [Prochlorococcus marinus str. MIT 9211]
          Length = 196

 Score = 36.5 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 59/180 (32%), Gaps = 31/180 (17%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
            +  ++ ++  +  +D    + + ++SPGGS Y G  IF  I+ VK     +      + 
Sbjct: 38  SANRIVAQLLFLEAEDPEKDIFLYINSPGGSVYDGLGIFDTIEHVKPDVHTVCVGLAASM 97

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
            A  L + A     + + S +     L                                 
Sbjct: 98  GAFLLCAGAKGKRSSLKHSRIMIHQPLGGARGQ--------------------------- 130

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                 +++  D +          ++E    P ++    +D   + +  EA + G+ID +
Sbjct: 131 ---ASDIRIQADEILFLKDRLNNELAERTGQPIERISQDTDRDFYMSPDEALEYGIIDNI 187


>gi|332295626|ref|YP_004437549.1| protein of unknown function DUF114 [Thermodesulfobium narugense DSM
           14796]
 gi|332178729|gb|AEE14418.1| protein of unknown function DUF114 [Thermodesulfobium narugense DSM
           14796]
          Length = 276

 Score = 36.5 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 5/105 (4%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           I+DS++++  I    +D     ++    +PGG   A E I +A+ +     PV   +   
Sbjct: 67  IDDSEQILRAIRLTEKDMPIDIIL---HTPGGLVLAAEQIAKALIRHPA--PVRVFIPHY 121

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           A S G +++ A++ I   E +++G +            L  +   
Sbjct: 122 AMSGGTMLALAADEIYLDENAVLGPVDPQLGEYPAVSILQAVREK 166


>gi|298248117|ref|ZP_06971922.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
 gi|297550776|gb|EFH84642.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
          Length = 183

 Score = 36.5 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I   IEDS    +I ++  +  +D+   + + L+SPGG+ YAG AI+ AIQ ++   
Sbjct: 21  ILCINTAIEDSVANSIITQLFYLQSEDATRDIHLYLNSPGGNIYAGLAIYDAIQSLRPEI 80

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
                      +   L +       A  TS +G   V+ 
Sbjct: 81  ATYCLGRTSGFATLLLAAGEKGRRYALPTSTIGLTQVVA 119


>gi|311744638|ref|ZP_07718436.1| enoyl-CoA hydratase [Aeromicrobium marinum DSM 15272]
 gi|311312054|gb|EFQ81973.1| enoyl-CoA hydratase [Aeromicrobium marinum DSM 15272]
          Length = 255

 Score = 36.5 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%)

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
           P      ++ GR + G +A   GL+D     +++  +   L  D + +        K+  
Sbjct: 183 PRTAVDAMTTGRRYGGPDALAAGLVDATASLDDLPGAAADLVRDLAGKDRPTLKAIKDEM 242

Query: 260 FCD 262
           F  
Sbjct: 243 FAG 245


>gi|212539057|ref|XP_002149684.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
 gi|210069426|gb|EEA23517.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
          Length = 285

 Score = 36.5 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 22/57 (38%)

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
           + +G+ +T  EA +  ++D VG   E    +   G+ +           +  W   L
Sbjct: 176 ILEGKRFTAQEALEGKIVDGVGELPEAIDFVQKRGLLKIGSSPSFVPLKERLWAEVL 232


>gi|153833246|ref|ZP_01985913.1| membrane-bound serine protease [Vibrio harveyi HY01]
 gi|148870517|gb|EDL69432.1| membrane-bound serine protease [Vibrio harveyi HY01]
          Length = 455

 Score = 36.5 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 65/198 (32%), Gaps = 12/198 (6%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI-QKVKNR 96
            + ++G I    S  L   IE   ++     +I+ + +PGG   +   I  AI       
Sbjct: 25  VLPVKGAIGPALSDYLSREIEEAQQN-GVDLVILKMDTPGGLDSSMRDIIHAITTSTVPI 83

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL--FQYPYVKPFLDKLGVSIKS 154
              +      AASAG  I  AS++   AE + +G+   +     P      +    +   
Sbjct: 84  ATWVGPSGSRAASAGTYILLASHVAAMAEATNLGAATPVALGGAPQQPSSDEGKDSTDSQ 143

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
            +S+   ++  P      K V                  +E           +S      
Sbjct: 144 PESTEKASDEVPAKTAMEKKVINDARAYIKGLARLHDRNAE------WAEKAVSMAASLD 197

Query: 215 GAEAKKVGLIDVVGGQEE 232
             EA ++ +ID +    E
Sbjct: 198 ATEALELNVIDFIANSPE 215


>gi|118431782|ref|NP_148461.2| hypothetical protein APE_2212.1 [Aeropyrum pernix K1]
 gi|116063104|dbj|BAA81224.2| conserved hypothetical protein [Aeropyrum pernix K1]
          Length = 292

 Score = 36.5 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 69/183 (37%), Gaps = 16/183 (8%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           I+DS+ +I  I           + + L +PGG   A   I RA+++ + RK VI   + M
Sbjct: 73  IDDSEAVIRAIR---STPPEKPIALILHTPGGLVLAASQIARALKRHRGRKIVIVPHYAM 129

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           +   G LI+ A++ I     +++G +          P +    V   +        + + 
Sbjct: 130 SG--GTLIALAADEIRMDPNAVLGPLDPQLSAGPTGPAVPAPSVVKVARMKGKDAQDTTL 187

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220
                 +        V +        V ++R     +T VL     WT        +A++
Sbjct: 188 ILADVAEKAIEEMREVITELLKDKMGVEKAR-----ETAVLLTEGRWTHDYPITFEKARE 242

Query: 221 VGL 223
           +GL
Sbjct: 243 IGL 245


>gi|317122981|ref|YP_004102984.1| hypothetical protein Tmar_2177 [Thermaerobacter marianensis DSM
           12885]
 gi|315592961|gb|ADU52257.1| protein of unknown function DUF107 [Thermaerobacter marianensis DSM
           12885]
          Length = 470

 Score = 36.5 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 82/264 (31%), Gaps = 40/264 (15%)

Query: 37  HVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94
            V  I +RG IE   ++ +    E+  RD    A+++ +S+ GG       I  AI    
Sbjct: 54  RVLVIPVRGNIEPGLARFVTRGFEQARRDR--AAVLLEISTFGGRVDGATDIRGAINAAV 111

Query: 95  NRKPVITEVHEMAASAGYL-ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
                +       A +    I+ A+  +  A  + +G+       P  +  +  +    +
Sbjct: 112 AAGVPVAAWVPDRAISAGALIAIAAPSLYMAPDATLGAAEPR---PADEKTISFVRAEFE 168

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213
           +      +      + V+                    LV +                  
Sbjct: 169 AAARHRGRDPQVAAAMVDKDVAIP-------------NLVEKG------------QILTL 203

Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD------LKNLS 267
           TG +A+++G I+ +    +        G                 +  D      L ++ 
Sbjct: 204 TGEKAREIGFIEGLASSRQQALEAAGWGELPVEELAPTAAERVARFVTDPVVAPILLSIG 263

Query: 268 ISSLLEDT-IPLMKQTKVQGLWAV 290
           ++ L+ +  +P      + GL ++
Sbjct: 264 MAGLVAEFYVPGFGFPGIVGLLSL 287


>gi|77128443|ref|YP_113048.2| ATP-dependent Clp protease proteolytic subunit [Methylococcus
           capsulatus str. Bath]
 gi|83301431|sp|Q60BE8|CLPP2_METCA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|66270664|gb|AAU93284.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylococcus
           capsulatus str. Bath]
          Length = 195

 Score = 36.5 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 62/197 (31%), Gaps = 33/197 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED     +I ++  +  ++    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 26  VIFLVGQVEDYMANLVIAQLLFLESENPDKDIHLYINSPGGLVTAGLAIYDTMQFIKPDV 85

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A+        S +     L  +      +D     I +V  
Sbjct: 86  STLCVGQAASMGALLLAGGAAGKRYCLPHSRIMIHQPLGGFQGQASDIDIHAREILAV-- 143

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                            ++++     P +K            G 
Sbjct: 144 ----------------------------RDRLNKILAHHTGQPIEKIQIDTDRDNFMGGD 175

Query: 217 EAKKVGLIDVVGGQEEV 233
           +A   GLID V     V
Sbjct: 176 DAVSYGLIDKVLTHRTV 192


>gi|298372622|ref|ZP_06982612.1| Clp protease [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275526|gb|EFI17077.1| Clp protease [Bacteroidetes oral taxon 274 str. F0058]
          Length = 226

 Score = 36.5 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 61/193 (31%), Gaps = 33/193 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  +  ++  +   D    + + ++SPGG   AG  I+  +Q V ++ 
Sbjct: 59  IIFLGTPIDDYVANVIQAQLLFLDTSDPGKDISIYINSPGGVVQAGLGIYDTMQYVSSKV 118

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L++       A   S V               ++     ++    
Sbjct: 119 GTICTGMAASMAAVLLVAGEKGRRSALPHSRVMIHQPSGGMQGQSSDMEIAVREVQ---- 174

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                             ++SE    P+D+    SD   W T  
Sbjct: 175 --------------------------KLRKELYHIISEHSGQPFDRVEKDSDRDYWMTAQ 208

Query: 217 EAKKVGLIDVVGG 229
           EA   G++D V  
Sbjct: 209 EALDYGMVDSVLT 221


>gi|239948026|ref|ZP_04699779.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922302|gb|EER22326.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 201

 Score = 36.5 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 29/187 (15%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  ++    + + ++SPGG   AG AI+  +Q +K +   +      A S G 
Sbjct: 44  IVAQLLFLEAENPKKDIYMYINSPGGVITAGLAIYDTMQYIKPKVATLCIGQ--ACSMGS 101

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L+ C     +                             I+      +K +       + 
Sbjct: 102 LLLCGGEKGMR-----YSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSK 156

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
              Q ++ +  S                             +  EAKK G+ID +    +
Sbjct: 157 HTRQELKHIEKSMERDN----------------------FMSPEEAKKFGIIDNIISSRD 194

Query: 233 VWQSLYA 239
                  
Sbjct: 195 AMTMSAK 201


>gi|58700085|ref|ZP_00374620.1| Clp protease [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58533399|gb|EAL57863.1| Clp protease [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 142

 Score = 36.5 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 41/114 (35%), Gaps = 2/114 (1%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G IED+    ++ ++  +  ++    + + ++SPGG   AG +I+  +Q +    
Sbjct: 29  IIFVTGPIEDNMASVIVAQLLFLESENPDKDICMYINSPGGVVTAGLSIYDTMQYINPDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
             +      +  +  L +       +   S +        Y      ++     
Sbjct: 89  STLCIGQAASMGSLLLAAGTKGKRYSLPHSRIMIHQPSGGYHGQATDIEIHANE 142


>gi|227519561|ref|ZP_03949610.1| Clp protease [Enterococcus faecalis TX0104]
 gi|312902470|ref|ZP_07761676.1| Clp protease [Enterococcus faecalis TX0635]
 gi|227073010|gb|EEI10973.1| Clp protease [Enterococcus faecalis TX0104]
 gi|310634140|gb|EFQ17423.1| Clp protease [Enterococcus faecalis TX0635]
 gi|315579722|gb|EFU91913.1| Clp protease [Enterococcus faecalis TX0630]
          Length = 239

 Score = 36.5 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 64/195 (32%), Gaps = 15/195 (7%)

Query: 40  RIAIRGQIE----DSQELIER--IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
            + + G I        ++I+   I     D     + + L+SPGG  + G  I+  ++  
Sbjct: 21  VLTLSGNIRKKYWSDDDVIDAKSIRETL-DGVTDDITIKLNSPGGDVFEGVEIYNYLKDH 79

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG----VLFQYPYVKPFLDKLG 149
            ++  V      +AASA   I  A++  +    + V               ++  L+ L 
Sbjct: 80  PSKVTVEV--TGVAASAATFILSAADEAIMNVGTSVMIHEASTFTWGNKQDIQKTLNALE 137

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW-FVRLVSESRNIPYDKTLVLS 208
               S+ S   +       ++     +      + +  + F   V ++       +    
Sbjct: 138 TIDDSILSIYSQKTGQTTDQLETWMREEKWFTAEEAVEYGFATEVKKNTEKNSTDSKENI 197

Query: 209 DGRIWTG-AEAKKVG 222
              +    AEA  + 
Sbjct: 198 AEMVKNAVAEAMSLN 212


>gi|194398443|ref|YP_002037392.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae G54]
 gi|194358110|gb|ACF56558.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae G54]
          Length = 147

 Score = 36.5 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 2/120 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   DS   + + +++PGGS  AG AI   +  +K   
Sbjct: 27  IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVXTMNFIKADV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S A         +       +          D    +   +K+
Sbjct: 87  QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKN 146


>gi|172039858|ref|YP_001799572.1| enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
           [Corynebacterium urealyticum DSM 7109]
 gi|171851162|emb|CAQ04138.1| enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
           [Corynebacterium urealyticum DSM 7109]
          Length = 756

 Score = 36.5 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 67/246 (27%), Gaps = 27/246 (10%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
           D    + +++          +++  +S   + +AG  I   I+                A
Sbjct: 37  DLTATVAKVKEAVEAGEVKGVVI--ASAKKTFFAGGDIKSMIKATPAD-----------A 83

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
           +            + A  +L   +        +   L+    +   V S     +     
Sbjct: 84  AELTQQIDQMKADLRALETLGVPVAAAINGTALGGGLELALATHHRVASDAKGLKVGL-- 141

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
                       +        V  V+    +      VL+ GR +   +A K GLID V 
Sbjct: 142 --------PEVTLGLLPGGGGVTRVTRMLGLQDALMKVLTTGRQFGAQDALKTGLIDEVV 193

Query: 229 GQEEVWQSLYALGVDQSIRK----IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284
             +++  +      +    K     + +  P            + S   +    +K   +
Sbjct: 194 PADQLLDAAKKWVKENPDAKQPWDTEGYKVPGGTPTNPKLAAFLPSFPANVTKQIKGAPM 253

Query: 285 QGLWAV 290
               A+
Sbjct: 254 PAPKAI 259


>gi|330975104|gb|EGH75170.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 150

 Score = 36.5 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 2/99 (2%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED     +  ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 45  VIFMVGPVEDYMANLIAAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 104

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
             I      +  A  L   A         S +     L 
Sbjct: 105 STICIGQACSMGAFLLAGGAEGKRHCLPNSRMMIHQPLG 143


>gi|296108928|ref|YP_003615877.1| protein of unknown function DUF114 [Methanocaldococcus infernus ME]
 gi|295433742|gb|ADG12913.1| protein of unknown function DUF114 [Methanocaldococcus infernus ME]
          Length = 272

 Score = 36.5 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 59/150 (39%), Gaps = 5/150 (3%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            IEDS+E++  I     +     +I    +PGG A A E I  A+++ K    VI   + 
Sbjct: 66  TIEDSEEILRAIRLTPDNMPIDLII---HTPGGIALAAEQIALALKEHKAETRVIIPHYA 122

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
           M+   G LI+ A++ I+  + +++G +            ++      + V    +     
Sbjct: 123 MSG--GTLIALAADKIIMDKNAVLGPVDPQLGQYPAASIIETYYKKGEKVSDEFLVLYDV 180

Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
               +      + + + D       + +++
Sbjct: 181 AKKAIKQMEDFVYELLKDKYGEEKAKELAK 210


>gi|256849988|ref|ZP_05555419.1| Clp protease [Lactobacillus crispatus MV-1A-US]
 gi|262046764|ref|ZP_06019724.1| Clp protease [Lactobacillus crispatus MV-3A-US]
 gi|256713477|gb|EEU28467.1| Clp protease [Lactobacillus crispatus MV-1A-US]
 gi|260572746|gb|EEX29306.1| Clp protease [Lactobacillus crispatus MV-3A-US]
          Length = 231

 Score = 36.5 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 46/177 (25%), Gaps = 33/177 (18%)

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116
           I       S   ++V ++S GG   AG  I+  ++K             +          
Sbjct: 35  IRDALNQASGQDIVVEINSRGGYVDAGSEIYTELKK---------YQGNIDIQIVGYACS 85

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
           A++ I  A  ++  S              D     + S                      
Sbjct: 86  AASWIALAGDTVEMSPTAQLMIHRASGGADGNVDDLASAMQG------------------ 127

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEE 232
                +D      V L ++       +   L     W     A   G +D +  ++E
Sbjct: 128 -----LDQMDQALVDLYAKRTGKSAQEVYQLMAKESWMNAKTAVANGFVDSIMFEDE 179


>gi|212539061|ref|XP_002149686.1| enoyl-CoA hydratase/isomerase family protein [Penicillium marneffei
           ATCC 18224]
 gi|210069428|gb|EEA23519.1| enoyl-CoA hydratase/isomerase family protein [Penicillium marneffei
           ATCC 18224]
          Length = 272

 Score = 36.5 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 22/57 (38%)

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
           + +G+ +T  EA +  ++D VG   E    +   G+ +           +  W   L
Sbjct: 176 ILEGKRFTAQEALEGKIVDGVGELPEAIDFVQKRGLLKIGSSPSFVPLKERLWAEVL 232


>gi|83590616|ref|YP_430625.1| hypothetical protein Moth_1781 [Moorella thermoacetica ATCC 39073]
 gi|83573530|gb|ABC20082.1| Protein of unknown function DUF114 [Moorella thermoacetica ATCC
           39073]
          Length = 276

 Score = 36.5 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 5/105 (4%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS++++  I     D       + L +PGG   A E I  AI K   +  V   V   
Sbjct: 67  IEDSEQILRAIRLTPDDMPID---LVLHTPGGLVLAAEQIAHAILKHPAK--VTVYVPHY 121

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           A S G LI+ A++ IV  E +++G +            +  +   
Sbjct: 122 AMSGGTLIALAADEIVMDENAVLGPVDPQLGEYPAASIIKVIEEK 166


>gi|239618479|ref|YP_002941801.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kosmotoga
           olearia TBF 19.5.1]
 gi|239507310|gb|ACR80797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kosmotoga
           olearia TBF 19.5.1]
          Length = 206

 Score = 36.5 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 33/187 (17%)

Query: 42  AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101
            +  +I +   ++ ++  +   D    + + ++SPGGS  +G AI+  +Q +K     I 
Sbjct: 40  PLDDEISNI--VVAQLLFLESQDPDKDISIYINSPGGSVTSGLAIYDTMQYIKPDVSTIC 97

Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
                + +A  L   +     A   S +                                
Sbjct: 98  IGMAASMAAVILAGGSKGKRFALPHSRIMIHQPWG------------------------- 132

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220
                 +E   K +++    +         ++S   N P +K    +D   + + AEA K
Sbjct: 133 -----GAEGTAKDIEIRTRELLFIRDQINEILSHHTNQPKEKIEEDTDRDFYMSPAEAVK 187

Query: 221 VGLIDVV 227
            GL+D V
Sbjct: 188 YGLVDKV 194


>gi|156977386|ref|YP_001448292.1| serine protease [Vibrio harveyi ATCC BAA-1116]
 gi|156528980|gb|ABU74065.1| hypothetical protein VIBHAR_06173 [Vibrio harveyi ATCC BAA-1116]
          Length = 455

 Score = 36.5 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 65/198 (32%), Gaps = 12/198 (6%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI-QKVKNR 96
            + ++G I    S  L   IE   ++     +I+ + +PGG   +   I  AI       
Sbjct: 25  VLPVKGAIGPALSDYLSREIEEAQQN-GVELVILKMDTPGGLDSSMRDIIHAITTSTVPI 83

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL--FQYPYVKPFLDKLGVSIKS 154
              +      AASAG  I  AS++   AE + +G+   +     P      +    +   
Sbjct: 84  ATWVGPSGSRAASAGTYILLASHVAAMAEATNLGAATPVALGGAPQQPSSDEGKDSTDSQ 143

Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
            +S+   ++  P      K V                  +E           +S      
Sbjct: 144 PESTEKASDEVPAKTAMEKKVINDARAYIKGLARLHDRNAE------WAEKAVSMAASLD 197

Query: 215 GAEAKKVGLIDVVGGQEE 232
             EA ++ +ID +    E
Sbjct: 198 ATEALELNVIDFIANSPE 215


>gi|187924712|ref|YP_001896354.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Burkholderia
           phytofirmans PsJN]
 gi|187715906|gb|ACD17130.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Burkholderia
           phytofirmans PsJN]
          Length = 706

 Score = 36.5 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
               ++  GR  +  EA   GLID +G  +++   
Sbjct: 153 AALDLILSGRHASAKEALAFGLIDRLGSSDDILAE 187


>gi|15643678|ref|NP_228724.1| hypothetical protein TM0916 [Thermotoga maritima MSB8]
 gi|4981452|gb|AAD35997.1|AE001755_20 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 284

 Score = 36.5 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 4/109 (3%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+E++  I+    D     ++    +PGG   A E I RA++     K  +   H  
Sbjct: 72  IEDSEEILRAIKLTPSDMPIDLIL---HTPGGLVLAAEQIARALKMH-KGKVTVFVPHYA 127

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
            +    +   A  II+     L      +   P            +  V
Sbjct: 128 MSGGTLIALAADEIIMDENAVLGPLDPQIGNMPAPSILAAVKKKDVNEV 176


>gi|67921361|ref|ZP_00514879.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
 gi|67856473|gb|EAM51714.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
          Length = 226

 Score = 36.5 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 72/212 (33%), Gaps = 33/212 (15%)

Query: 17  LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSP 76
           ++ L +  FS     +              I+ +Q +I ++  +  D+    +   ++S 
Sbjct: 32  IIYLGLPLFSSDEIKQQVG-----------IDVTQLIIAQLLYLQFDNPEKPIYFYINST 80

Query: 77  GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136
           G S Y G+AI    +        I +         + I     +  AA     G+ G   
Sbjct: 81  GTSWYTGDAIGFETEAFA-----ICDTMNYIKPPIHTICIGQAMGTAAMILSAGTKGCRA 135

Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
             P+    L++     +                     +Q+    V  +    + +++E+
Sbjct: 136 SLPHATIVLNQNRSGAQG----------------QATDIQIRAKEVLQNKQTMLTILAEN 179

Query: 197 RNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                +K     D   + T A+AK+ GLID V
Sbjct: 180 TGQTAEKIAKDIDRTFYLTPAKAKEYGLIDRV 211


>gi|110635697|ref|YP_675905.1| hypothetical protein Meso_3369 [Mesorhizobium sp. BNC1]
 gi|110286681|gb|ABG64740.1| protein of unknown function DUF107 [Chelativorans sp. BNC1]
          Length = 488

 Score = 36.5 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSA 66
               ++   + L+  + + S   ++       + + G +    +  +   +E  +  + A
Sbjct: 17  TASVLITFFLVLSGGFVASSPKAQETGGTAIVLRLEGAVSPATADYVTNGLEIAAERE-A 75

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQK 92
             +++ + +PGG   +   I RAI  
Sbjct: 76  RLVVLLIDTPGGLDTSMREIIRAILA 101


>gi|326941533|gb|AEA17429.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 258

 Score = 36.5 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 64/227 (28%), Gaps = 53/227 (23%)

Query: 41  IAIRGQIEDSQE----------------LIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           I ++G I  + E                + ++++  + +D    LIVS++SPGG    G 
Sbjct: 5   IDVKGPIISNDEAWIYDWFEMDATSPGKITKQLDNANSED----LIVSINSPGGYVDEGS 60

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            I+ A++       V                     IV    S    I +      + P 
Sbjct: 61  EIYTALKNYPGHVEV--------------------QIVGLAASAASVIAMAGDKVRISPT 100

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
              +  +         +        +      ++   V  S                ++ 
Sbjct: 101 AKIMIHNAAKWHGGDHRDMEKAAEMLKITDRAIVNAYVIKS------------GKSEEEL 148

Query: 205 LVLSDGRIWTG-AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
           L +     W G  +A +    D +   E   +   ++     + +  
Sbjct: 149 LNMMAEETWMGPQQALENNFADEIMFMENPVKMTASMATAAMLPQKV 195


>gi|148269156|ref|YP_001243616.1| hypothetical protein Tpet_0011 [Thermotoga petrophila RKU-1]
 gi|281411454|ref|YP_003345533.1| protein of unknown function DUF114 [Thermotoga naphthophila RKU-10]
 gi|147734700|gb|ABQ46040.1| protein of unknown function DUF114 [Thermotoga petrophila RKU-1]
 gi|281372557|gb|ADA66119.1| protein of unknown function DUF114 [Thermotoga naphthophila RKU-10]
          Length = 284

 Score = 36.5 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 4/109 (3%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+E++  I+    D     ++    +PGG   A E I RA++     K  +   H  
Sbjct: 72  IEDSEEILRAIKLTPSDMPIDLIL---HTPGGLVLAAEQIARALKMH-KGKVTVFVPHYA 127

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
            +    +   A  II+     L      +   P            +  V
Sbjct: 128 MSGGTLIALAADEIIMDENAVLGPLDPQIGNMPAPSILAAVKKKDVNEV 176


>gi|195473423|ref|XP_002088993.1| GE18879 [Drosophila yakuba]
 gi|194175094|gb|EDW88705.1| GE18879 [Drosophila yakuba]
          Length = 280

 Score = 36.5 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQS 236
               L+ GR++T  EA + GL+D +    EE  + 
Sbjct: 178 AERALTQGRMFTTQEAFEAGLVDEIASSKEEAVEK 212


>gi|184153715|ref|YP_001842056.1| phage Clp-protease [Lactobacillus reuteri JCM 1112]
 gi|227365058|ref|ZP_03849093.1| S14 family endopeptidase ClpP [Lactobacillus reuteri MM2-3]
 gi|325681598|ref|ZP_08161119.1| ATP-dependent Clp protease, protease subunit [Lactobacillus reuteri
           MM4-1A]
 gi|183225059|dbj|BAG25576.1| phage clp-protease [Lactobacillus reuteri JCM 1112]
 gi|227069908|gb|EEI08296.1| S14 family endopeptidase ClpP [Lactobacillus reuteri MM2-3]
 gi|324979063|gb|EGC16009.1| ATP-dependent Clp protease, protease subunit [Lactobacillus reuteri
           MM4-1A]
          Length = 244

 Score = 36.5 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 56/200 (28%), Gaps = 46/200 (23%)

Query: 41  IAIRGQIE--DSQELIERI----------ERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
           I ++G I   D  ++ + +          E +  +     + V ++S GGS +A   I+ 
Sbjct: 5   INVKGVIVSNDDADIYDWLGYDCVSPNQVEDVLNNSD-EDIEVDIASGGGSVFAASEIYT 63

Query: 89  AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148
            ++             ++  +   L + A+++I  A   +  S                 
Sbjct: 64  MLKA---------YSGKVVVNIQGLAASAASVIAMAGDEINMSPTSQMMIHKAS------ 108

Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208
                ++              ++                  V        +  D  L L 
Sbjct: 109 -----TISMGNADDFAHDSKMLD------------VMDQSIVNAYEAKTGMDRDDILQLM 151

Query: 209 DGRIW-TGAEAKKVGLIDVV 227
               W T  +A   G  D +
Sbjct: 152 ANETWMTAQDAVDKGFADNI 171


>gi|89901371|ref|YP_523842.1| 3-hydroxyacyl-CoA dehydrogenase [Rhodoferax ferrireducens T118]
 gi|89346108|gb|ABD70311.1| 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase
           [Rhodoferax ferrireducens T118]
          Length = 706

 Score = 36.5 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 7/91 (7%)

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS--LYALGVDQSIRKIKDWNPPKNY 258
                ++  GR     EA  +GL+D +G   ++      Y   +  +   ++     +  
Sbjct: 152 KAALDLMLSGRHMGAEEAHALGLVDRLGHSNDILADGLAYTQELLATHAPVRRTRDAQAL 211

Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                   SI     + +      K +GL++
Sbjct: 212 SDRQANRASI-----EAVRAETGKKSRGLFS 237


>gi|312898086|ref|ZP_07757484.1| Clp protease [Megasphaera micronuciformis F0359]
 gi|310620819|gb|EFQ04381.1| Clp protease [Megasphaera micronuciformis F0359]
          Length = 159

 Score = 36.5 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 26/136 (19%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQ--------------------ELIERIERISRDDSATAL 69
            V++ +P  A + I G I D                      ++ E++E +        L
Sbjct: 12  TVKNETPQSAEVYIHGDIVDDDMKAWLSDCDGKTFAGYVLPVDVREKLESLQG----KDL 67

Query: 70  IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129
            + ++S GGS  AG AI   I++       +  V   AAS   +I  A + +   + + +
Sbjct: 68  TIYINSDGGSVPAGMAIANMIKRH--DGHTVGVVDGWAASIASVIFMACDDLYMPKNTFL 125

Query: 130 GSIGVLFQYPYVKPFL 145
                          +
Sbjct: 126 MIHKPSAMAMGDSDDM 141


>gi|187251176|ref|YP_001875658.1| endopeptidase Clp [Elusimicrobium minutum Pei191]
 gi|259585952|sp|B2KCS5|CLPP_ELUMP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|186971336|gb|ACC98321.1| Endopeptidase Clp [Elusimicrobium minutum Pei191]
          Length = 195

 Score = 36.5 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 62/184 (33%), Gaps = 28/184 (15%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107
             +  +I ++  +  +DS   + + ++SPGG   AG AI+  +Q +K     I     M+
Sbjct: 37  ASATMIIAQLLYLDAEDSEREINLYINSPGGLVTAGLAIYDTMQFIKAPITTICMGQAMS 96

Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167
             A  L + +     A   + +     L                   +    +  + +  
Sbjct: 97  FGAVLLAAGSKGKRYALPHARIMIHQPL-------------------IWGGGISGQVTDI 137

Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDV 226
              + +           +    + +++       +K    S+   + +  EAK  GLID 
Sbjct: 138 EIESNELR--------KNKEHLLDILAHHTGQDKEKIRQDSERNYYMSAQEAKAYGLIDE 189

Query: 227 VGGQ 230
           V   
Sbjct: 190 VLDL 193


>gi|322832526|ref|YP_004212553.1| peptidase S14 ClpP [Rahnella sp. Y9602]
 gi|321167727|gb|ADW73426.1| peptidase S14 ClpP [Rahnella sp. Y9602]
          Length = 282

 Score = 36.5 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 75/246 (30%), Gaps = 36/246 (14%)

Query: 29  SHVEDNSPHVARIAIRGQIEDSQEL-IERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87
                N   ++   + G     + +   RI    R  +   + VS++SPGG  + G AI+
Sbjct: 35  KAANSNDNTISIFDVIGADYWGEGVTANRIAGALRSMNGEDVTVSINSPGGDMFEGLAIY 94

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             +++  + K  +  +   A++A  +      + +     L+                  
Sbjct: 95  NQLRE-YSGKVTVKVLGIAASAASIIAMAGDEVQIGRGAFLMIHNC-------------- 139

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
                                ++ P    M                S    +       +
Sbjct: 140 -----WVYAVGNRHDLARAAQDMEPFDRAMQDIY------------SARSGLDASDVSEM 182

Query: 208 SDGRIWT-GAEAKKVGLIDVVGGQEEVW--QSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
            D   +  G +A + G  D +   +E+       A  + +    +   N P++     LK
Sbjct: 183 MDNETYIGGNDAVEKGFADRLLSADEISDGDESPAAALRKLDALLAKANTPRSERRKLLK 242

Query: 265 NLSISS 270
           +LS S+
Sbjct: 243 SLSAST 248


>gi|119481837|ref|XP_001260947.1| enoyl-CoA hydratase/isomerase family protein [Neosartorya fischeri
           NRRL 181]
 gi|119409101|gb|EAW19050.1| enoyl-CoA hydratase/isomerase family protein [Neosartorya fischeri
           NRRL 181]
          Length = 271

 Score = 36.5 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG-------VDQSIRKIKDWNPPKN 257
            ++ + R + G ++  VGL+D VGG EE  Q +   G             K + +    +
Sbjct: 171 DLILEARRFAGPQSVAVGLVDGVGGLEETLQLIRERGLQTKAATGIYGTMKEEMYRHTLD 230

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                  NL+    +E+     +   ++ + A
Sbjct: 231 ILDNHAGNLAWREQVEEKKGTYEDAALRAVKA 262


>gi|53802553|ref|YP_112777.1| ATP-dependent Clp protease proteolytic subunit [Methylococcus
           capsulatus str. Bath]
 gi|67460462|sp|Q60C68|CLPP1_METCA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|53756314|gb|AAU90605.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylococcus
           capsulatus str. Bath]
          Length = 206

 Score = 36.5 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + GQ+ED     +I ++  +  ++    + + ++SPGG   AG AI+  +Q +K   
Sbjct: 37  VIFLVGQVEDYMANLVIAQLLFLESENPDKDIHLYINSPGGLVTAGLAIYDTMQFIKPDV 96

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L   A+        S +     L  +      +D     I +V  
Sbjct: 97  STLCVGQAASMGALLLAGGAAGKRYCLPHSRIMIHQPLGGFQGQASDIDIHAREILAV-- 154

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                                            ++++     P +K            G 
Sbjct: 155 ----------------------------RDRLNKILAHHTGQPIEKIQIDTDRDNFMGGN 186

Query: 217 EAKKVGLIDVV 227
           +A + GLID V
Sbjct: 187 DAVEYGLIDKV 197


>gi|257090835|ref|ZP_05585196.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|256999647|gb|EEU86167.1| conserved hypothetical protein [Enterococcus faecalis CH188]
          Length = 243

 Score = 36.5 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 64/195 (32%), Gaps = 15/195 (7%)

Query: 40  RIAIRGQIE----DSQELIER--IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
            + + G I        ++I+   I     D     + + L+SPGG  + G  I+  ++  
Sbjct: 25  VLTLSGNIRKKYWSDDDVIDAKSIRETL-DGVTDDITIKLNSPGGDVFEGVEIYNYLKDH 83

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG----VLFQYPYVKPFLDKLG 149
            ++  V      +AASA   I  A++  +    + V               ++  L+ L 
Sbjct: 84  PSKVTVEV--TGVAASAATFILSAADEAIMNVGTSVMIHEASTFTWGNKQDIQKTLNALE 141

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW-FVRLVSESRNIPYDKTLVLS 208
               S+ S   +       ++     +      + +  + F   V ++       +    
Sbjct: 142 TIDDSILSIYSQKTGQTTDQLETWMREEKWFTAEEAVEYGFATEVKKNTEKNSTDSKENI 201

Query: 209 DGRIWTG-AEAKKVG 222
              +    AEA  + 
Sbjct: 202 AEMVKNAVAEAMSLN 216


>gi|302024225|ref|ZP_07249436.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           05HAS68]
          Length = 168

 Score = 36.5 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 2/115 (1%)

Query: 43  IRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI 100
           + G +ED  +  +I ++  +   D    + + +++PGGS  AG AI   +  +K     I
Sbjct: 2   LTGPVEDNMANSIIAQLLYLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTI 61

Query: 101 TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
                 +       S A         +       +          D    +   +
Sbjct: 62  VMGTAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL 116


>gi|300708413|ref|XP_002996386.1| hypothetical protein NCER_100532 [Nosema ceranae BRL01]
 gi|239605684|gb|EEQ82715.1| hypothetical protein NCER_100532 [Nosema ceranae BRL01]
          Length = 573

 Score = 36.5 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 19/187 (10%), Positives = 54/187 (28%), Gaps = 16/187 (8%)

Query: 44  RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103
            G++  ++   E I  I  D     +I   ++  G+    + +   IQ+           
Sbjct: 182 DGEVYSTE---EDINHIFEDGKTIDIITEQNTNQGNVSVSQEVKNEIQEEPALLVKENVS 238

Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163
           + + ++    +             +V S   ++   +       L    ++V  +P   +
Sbjct: 239 NIIHSTLYTTM-------------IVNSTATVYTTVFHTITSSILSNQTETVYVTPNLTD 285

Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223
               + V           V +          +  +        ++   ++   ++ +  L
Sbjct: 286 KLLQNTVIMPKSDENIASVATIPENQYYRSRKRISQKKKNEDSITQHELFPQNDSDEHQL 345

Query: 224 IDVVGGQ 230
            D V   
Sbjct: 346 TDSVTSF 352


>gi|228985478|ref|ZP_04145635.1| hypothetical protein bthur0001_21730 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774243|gb|EEM22652.1| hypothetical protein bthur0001_21730 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 344

 Score = 36.5 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 72/269 (26%), Gaps = 41/269 (15%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA---RIAIRGQIEDSQELIERI 57
           M+ + K I    V+ +L  +  + F   +        ++   +I I G    S E++  I
Sbjct: 1   MKKIKKLITFIGVITTLTLIVALVFPTWTSQIKGKNSISTLEQIEING---SSHEIM--I 55

Query: 58  ERISRDDSATALIVSLSSPGGSAYAGEA-IFRAIQKVKNRKPVITEVHEMAASAGYLISC 116
               +D +   +I       G   + E    +  QK+   K  +    +  +   Y    
Sbjct: 56  R--GKDKNNPVIIF----VHGGPGSSEIPYAQKYQKLLEEKFTVVNYDQRGSGKSYHFF- 108

Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176
                 +  TS +    VL    Y+   + K  V +            +           
Sbjct: 109 ---EDYSNLTSDLLVEDVLAMTEYISKRMGKEKVILIGHSYGTYIGMQAANKAPEKYEAY 165

Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           +                        D      D   +   +A+  G  D V         
Sbjct: 166 VGI------------------GQMSDTVESEMDSLNYVIEQAQNAGNTDEVSY----LNG 203

Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
           L     +      +++          ++N
Sbjct: 204 LTEKIKNGDTYTPRNYVAKYGGTSRLIEN 232


>gi|47027430|gb|AAT08792.1| capsid protein [Wolbachia phage WO]
          Length = 88

 Score = 36.5 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              V+L++ +R +  +K      G  + G +A ++GL D V    E   
Sbjct: 1   EMLVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFIN 48


>gi|253581496|ref|ZP_04858721.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           varium ATCC 27725]
 gi|251836566|gb|EES65101.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           varium ATCC 27725]
          Length = 191

 Score = 36.5 bits (82), Expect = 5.2,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +  +I+D  +  ++ ++  +  +D    +I+ ++SPGG   AG AI+  +  +K   
Sbjct: 28  IIFLGTEIDDNVANAIVAQLLFLEAEDPDKDIIMYINSPGGVVTAGMAIYDTMNYIKPDV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +      +  A  L + A     A E S +     L         ++           
Sbjct: 88  QTVCIGQAASMGALLLGAGARGKRYALEHSRIMIHQPLGGARGQATDIE----------- 136

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216
                              +    +        +++++       + +         +  
Sbjct: 137 -------------------IQAKEILRMKEMLSQILADCTGKSLSEIITDTERDNYMSAE 177

Query: 217 EAKKVGLIDVV 227
           EAK  GLID V
Sbjct: 178 EAKNYGLIDQV 188


>gi|87302740|ref|ZP_01085551.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 5701]
 gi|87282623|gb|EAQ74581.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 5701]
          Length = 196

 Score = 36.5 bits (82), Expect = 5.2,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 31/180 (17%)

Query: 49  DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108
            +  ++ ++  +  +D    + + ++SPGGS Y G  IF  +Q +K     +      + 
Sbjct: 38  SANRVVAQLLFLEAEDPEKDIFLYINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASM 97

Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168
            A  L + A     +   S +     L      +     + +    +     K       
Sbjct: 98  GAFLLTAGAKGKRSSLHHSRIMIHQPLG---GARGQASDIRIQADEILYLKDK------- 147

Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
                                 R +S+    P D+  + +D   + + AEA   GLID V
Sbjct: 148 --------------------LNRELSDRTGQPLDRIQIDTDRDFFMSPAEAVSYGLIDKV 187


>gi|313891822|ref|ZP_07825427.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP-like
           protein [Dialister microaerophilus UPII 345-E]
 gi|313119816|gb|EFR43003.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP-like
           protein [Dialister microaerophilus UPII 345-E]
          Length = 249

 Score = 36.1 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 52/159 (32%), Gaps = 13/159 (8%)

Query: 39  ARIAIRGQIEDS--QELIERIE-----RISRD--DSA--TALIVSLSSPGGSAYAGEAIF 87
           A I I G I D      I+ ++     +  +D  DS     + V ++S GGS  AG AI 
Sbjct: 11  AEIYIHGDIIDDFASNFIDGLDGFVFPKAIKDELDSIGEKPITVYINSDGGSVPAGVAIA 70

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
             +++ K +   +        S    I  +       + + +               L K
Sbjct: 71  NMLKRHKAKTTAVI--DGWCCSIATQIFFSCQERQIPKNAYLMIHKPSCTTVGDANELRK 128

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
              ++ +++    +   +   E             +S +
Sbjct: 129 TAEALDTIQKGLEEVYRAAAKEHITDEDITKYVNQESWF 167


>gi|302524885|ref|ZP_07277227.1| cyclohexa-1,5-dienecarbonyl-CoA hydratase [Streptomyces sp. AA4]
 gi|302433780|gb|EFL05596.1| cyclohexa-1,5-dienecarbonyl-CoA hydratase [Streptomyces sp. AA4]
          Length = 259

 Score = 36.1 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264
            ++  GR     EA K+G++D V   ++V+ + +      +                   
Sbjct: 157 DLIFTGRFVKAEEALKLGIVDEVVAPDDVYAAAHKWASQFANGPAVALR---------AA 207

Query: 265 NLSISSLLEDTIPLMKQTKVQGLWAVW 291
             +I S L+  +    + + Q   A+W
Sbjct: 208 KTAIDSGLDVDLATGLKIETQLFTALW 234


>gi|87125531|ref|ZP_01081376.1| ATP-dependent Clp protease proteolytic subunit 4 [Synechococcus sp.
           RS9917]
 gi|86166831|gb|EAQ68093.1| ATP-dependent Clp protease proteolytic subunit 4 [Synechococcus sp.
           RS9917]
          Length = 211

 Score = 36.1 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 22/180 (12%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +I ++  +  D+    +   ++S G S Y G+AI    +        I +         +
Sbjct: 42  IIAQLLYLEFDNPDKPIYFYINSTGTSWYTGDAIGFETEAFA-----ICDTLRYVKPPVH 96

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            I     +  AA     G+ G     P+    L +     +                   
Sbjct: 97  TICIGQAMGTAAVILSAGTKGQRAALPHASIVLHQPRSGARG----------------QA 140

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQE 231
             +Q+    V  +    + ++SE+     ++    SD   + T  +A + GLID V G  
Sbjct: 141 TDIQIRAKEVLHNKRAMLEILSENTGRSVEQLAKDSDRMSYLTPEQAVEYGLIDRVLGSR 200


>gi|241116836|ref|XP_002401631.1| ATP-dependent Clp protease, proteolytic subunit, putative [Ixodes
           scapularis]
 gi|215493175|gb|EEC02816.1| ATP-dependent Clp protease, proteolytic subunit, putative [Ixodes
           scapularis]
          Length = 205

 Score = 36.1 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 29/187 (15%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           ++ ++  +  ++    + + ++SPGG   AG AI+  +Q +K +   +      A S G 
Sbjct: 48  IVAQLLFLEAENPKKDIYMYINSPGGVITAGLAIYDTMQYIKPKVATLCIGQ--ACSMGS 105

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
           L+ C     +                             I+      +K +       + 
Sbjct: 106 LLLCGGEKGMR-----YSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSK 160

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
              Q ++ +  S                             +  EAKK G+ID +    +
Sbjct: 161 HTRQELKHIEKSMERDN----------------------FMSPEEAKKFGIIDNIISSRD 198

Query: 233 VWQSLYA 239
                  
Sbjct: 199 AMTMSAK 205


>gi|329116784|ref|ZP_08245501.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Streptococcus parauberis NCFD 2020]
 gi|326907189|gb|EGE54103.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Streptococcus parauberis NCFD 2020]
          Length = 196

 Score = 36.1 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 2/123 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  +  +I ++  +   D+   + + +++PGGS  AG AI   +  +K+  
Sbjct: 27  IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S           +       +          D   V+ + +K+
Sbjct: 87  QTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGNGTQQSDMAIVAEQLLKT 146

Query: 158 SPM 160
              
Sbjct: 147 RKR 149


>gi|124027194|ref|YP_001012514.1| hypothetical protein Hbut_0297 [Hyperthermus butylicus DSM 5456]
 gi|123977888|gb|ABM80169.1| hypothetical protein Hbut_0297 [Hyperthermus butylicus DSM 5456]
          Length = 241

 Score = 36.1 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+ ++  I           + + L +PGG   A   I  A+++   +K VI   + M
Sbjct: 23  IEDSEAVLRAIR---TTPPNKPIALILHTPGGLVLAASQIAMALKRHPGKKIVIVPHYAM 79


>gi|319757818|gb|ADV69760.1| ClpP protease family protein [Streptococcus suis JS14]
          Length = 231

 Score = 36.1 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 60/192 (31%), Gaps = 37/192 (19%)

Query: 41  IAIRGQIEDSQELIERIE-RISRDDSATA---LIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           + I GQI D     + +  ++ ++D       + + ++SPGG  +A   I+  +     +
Sbjct: 16  LRIEGQIADETWFGDEVTPQVFKNDLHAGNGDITLWINSPGGDVFAAAQIYNMLMDY--K 73

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
             V   +  +AASA  +I+ A   +  +  +++                        +V 
Sbjct: 74  GDVHVVIDGLAASAASVIAMAGTTVSMSPVAMMMIHN------------------PWTVA 115

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215
               K        +                   +        +   K   L D   W   
Sbjct: 116 QGEAKDMQKVIEMLGE------------IKESIINAYELRTGLSRTKLSHLMDSESWFNA 163

Query: 216 AEAKKVGLIDVV 227
            +A ++G  D +
Sbjct: 164 KKAVELGFADKI 175


>gi|317147490|ref|XP_001822169.2| carnitinyl-CoA dehydratase [Aspergillus oryzae RIB40]
          Length = 289

 Score = 36.1 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 46/158 (29%), Gaps = 3/158 (1%)

Query: 84  EAIF--RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
           E I     +++          +     +  +      +       +       L      
Sbjct: 41  ELIRAFNTVRQTLGSNSEGAVITRGNNAKYFCTGLDLDEAEQNPHATTEGFYPLLHTILD 100

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
            PF     ++  +       A    +  +N +   +    VD   ++    V     +  
Sbjct: 101 FPFPTIALLTGHTFGGGCPVAFAHDYRVMNSQRGFISMPPVDLGMYFPGVGVLPRLKLRP 160

Query: 202 DKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                 L +G  +TG EA + GL+D +   +++    +
Sbjct: 161 QIARKVLLEGHRFTGEEALRDGLVDFIAQPDDMLAVAF 198


>gi|263173376|gb|ACY69926.1| hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Cimex
           lectularius]
          Length = 245

 Score = 36.1 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 7/106 (6%)

Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247
            + +    +          L  G+++T  EA  VGL+D +   ++               
Sbjct: 131 QWFQDCMRNTIGERQAEKALVSGKMFTSDEALVVGLVDELANDKD---EAVKKCETFLES 187

Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
           + K  +  +       +N ++S LL        +  +     ++ P
Sbjct: 188 QSKLPSLARRTVKLGFRNDTLSRLLNGR-EADTKLFLD---YIFQP 229


>gi|238495947|ref|XP_002379209.1| carnitinyl-CoA dehydratase, putative [Aspergillus flavus NRRL3357]
 gi|220694089|gb|EED50433.1| carnitinyl-CoA dehydratase, putative [Aspergillus flavus NRRL3357]
          Length = 207

 Score = 36.1 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 46/158 (29%), Gaps = 3/158 (1%)

Query: 84  EAIF--RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
           E I     +++          +     +  +      +       +       L      
Sbjct: 16  ELIRAFNTVRQTLGSNSEGAVITRGNNAKYFCTGLDLDEAEQNPHATTEGFYPLLHTILD 75

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
            PF     ++  +       A    +  +N +   +    VD   ++    V     +  
Sbjct: 76  FPFPTIALLTGHTFGGGCPVAFAHDYRVMNSQRGFISMPPVDLGMYFPGVGVLPRLKLRP 135

Query: 202 DKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238
                 L +G  +TG EA + GL+D +   +++    +
Sbjct: 136 QIARKVLLEGHRFTGEEALRDGLVDFIAQPDDMLAVAF 173


>gi|94309750|ref|YP_582960.1| hypothetical protein Rmet_0805 [Cupriavidus metallidurans CH34]
 gi|93353602|gb|ABF07691.1| Putative membrane-bound serine protease (Clpp class), S49 family
           [Cupriavidus metallidurans CH34]
          Length = 491

 Score = 36.1 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 67/223 (30%), Gaps = 17/223 (7%)

Query: 9   KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSA 66
           +   + L  ++      + S+      P V  I IRG I    +   +  IE+ S+   A
Sbjct: 41  RALGLTLLAISGAHAQSASSASTAPAVPPVYVIPIRGAISPASASFAVHGIEQASKH-GA 99

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
             +++ + +PGG   +   I +AI                                +A T
Sbjct: 100 QLIVIEMDTPGGLDKSMRDIIQAIIASPVPVATYVYPG-------------GARAASAGT 146

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
            ++ +  +    P                        P+      P A   M        
Sbjct: 147 YILYASHIAAMAPGTNLGAASPVAIGIGGPKPEAGPAPASAPSSAPAAEDTMTRKQMHDA 206

Query: 187 HWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVG 228
             ++R +++ R+   D     + +    +  EA    + D++ 
Sbjct: 207 SAYIRGLAQLRHRNADWGERAVREAVSLSADEAVAQHVADLIA 249


>gi|46110353|ref|XP_382234.1| hypothetical protein FG02058.1 [Gibberella zeae PH-1]
          Length = 157

 Score = 36.1 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 48/160 (30%), Gaps = 24/160 (15%)

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + ++SPGGS  +G AI+  +  +K+    +      + +A  L    +    +   S + 
Sbjct: 1   MYINSPGGSVTSGMAIYDTMTYIKSPVSTVCIGGAASMAAILLAGGEAGKRFSLPHSSIM 60

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
               L         +      I+  +    K      ++                     
Sbjct: 61  IHQPLGGTRGQASDIMIYANQIQKTREQSNKIMQYHLNKAKGHD---------------- 104

Query: 191 RLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGG 229
                      ++   L +  +  T  EA  +G+ID +  
Sbjct: 105 -------KYSLEEINDLMERDKYLTPEEALDLGVIDEILT 137


>gi|283779543|ref|YP_003370298.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pirellula
           staleyi DSM 6068]
 gi|283437996|gb|ADB16438.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pirellula
           staleyi DSM 6068]
          Length = 205

 Score = 36.1 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 53/179 (29%), Gaps = 31/179 (17%)

Query: 50  SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
           +  ++ ++  +  DD    + + ++SPGGS  AG AI+  +Q V             +  
Sbjct: 41  ANAIVAQMLFLQSDDPKADIHLYINSPGGSISAGMAIYDTMQFVTCDVATYCIGQAASMG 100

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
           A  L + A     A   + +     L                                  
Sbjct: 101 AVLLTAGAPGKRFALPNARIMIHQPLAGMQG----------------------------- 131

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227
              + + +              ++ +    P +K        R  + AEA +  ++D V
Sbjct: 132 -TAEEIMIHAKEFRRIKQRMNEIMLKHTGQPMEKIESDTDRDRFMSAAEAAEYRIVDKV 189


>gi|254471425|ref|ZP_05084827.1| 3-hydroxybutyryl-CoA dehydratase [Pseudovibrio sp. JE062]
 gi|211959571|gb|EEA94769.1| 3-hydroxybutyryl-CoA dehydratase [Pseudovibrio sp. JE062]
          Length = 271

 Score = 36.1 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 11/90 (12%), Positives = 28/90 (31%)

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231
                   +V +     +      +R  P          +  T  EA + GL+D V   +
Sbjct: 147 ENVKFKGMEVPNGWITPWGFHALNARMAPRHAQRAAWGYKFMTATEALRTGLVDEVVALD 206

Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261
           +++++   +    +          K ++  
Sbjct: 207 DLFETARTIAEQLAALPPVSVQATKRWYLD 236


>gi|297538721|ref|YP_003674490.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylotenera
           sp. 301]
 gi|297258068|gb|ADI29913.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylotenera
           sp. 301]
          Length = 219

 Score = 36.1 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 2/114 (1%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G + D     ++ ++  +  ++    + + ++SPGGS  AG +I+  +Q +K   
Sbjct: 51  VIFLVGPVNDMSANLVVAQLLFLEAENPDKDISLYINSPGGSVTAGMSIYDTMQFIKADV 110

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
             +      +  A  L + A     +   S V        +      ++     
Sbjct: 111 STLCIGQAASMGAFLLAAGAKGKRFSLPNSRVMIHQPSGGFQGQSTDIEIHAKE 164


>gi|170056139|ref|XP_001863897.1| 3,2-trans-enoyl-CoA isomerase, mitochondrial [Culex
           quinquefasciatus]
 gi|167875865|gb|EDS39248.1| 3,2-trans-enoyl-CoA isomerase, mitochondrial [Culex
           quinquefasciatus]
          Length = 283

 Score = 36.1 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSL 237
           +      +     D  + L+ G ++T  EA KVGL+D V    E+     
Sbjct: 167 WFMASMRNAMSRRDAEMALTLGTLFTTDEALKVGLVDEVATSKEDAIAKA 216


>gi|212696598|ref|ZP_03304726.1| hypothetical protein ANHYDRO_01138 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325847156|ref|ZP_08169955.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|212676329|gb|EEB35936.1| hypothetical protein ANHYDRO_01138 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325480936|gb|EGC83982.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 195

 Score = 36.1 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G +ED  S  +I ++  +   D    +   ++SPGG   AG AI+  +  +K   
Sbjct: 33  IIFLTGPVEDGVSDIIIAQLLFLESQDPNKDIQFYINSPGGVVTAGLAIYDTMNYIKPDV 92

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +  A  L S A     +   S +                            
Sbjct: 93  STICIGQAASMGAVLLSSGAKGKRFSLPNSNILIHQPSGGAQGQ---------------- 136

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGA 216
                            +Q+  + +        +++S++     +K    +D        
Sbjct: 137 --------------ASDIQIQAEQILKIKKRLNKILSDNTGQTIEKIQKDTDRDFSMDAY 182

Query: 217 EAKKVGLIDVV 227
           EAK+ GLID V
Sbjct: 183 EAKEYGLIDKV 193


>gi|220931947|ref|YP_002508855.1| periplasmic serine protease (ClpP class) [Halothermothrix orenii H
           168]
 gi|219993257|gb|ACL69860.1| periplasmic serine protease (ClpP class) [Halothermothrix orenii H
           168]
          Length = 265

 Score = 36.1 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 5/105 (4%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS++++  I     +     +++   +PGG   A E I  AI+K      VI   + M
Sbjct: 67  IEDSEQILRAIRSTPDEKPID-ILLH--TPGGLVLAAEQIAMAIKKHPAPVRVIVPHYAM 123

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
           +   G LI+ A++ I+  + +++G +            L      
Sbjct: 124 SG--GTLIALAADEIIMDKNAVLGPVDPQIGQYPAVSILKTASTK 166


>gi|145250727|ref|XP_001396877.1| enoyl-CoA hydratase/isomerase family protein [Aspergillus niger CBS
           513.88]
 gi|134082399|emb|CAK42414.1| unnamed protein product [Aspergillus niger]
          Length = 274

 Score = 36.1 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 49/181 (27%)

Query: 84  EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143
             +   I + + +K V+     +       +                         Y  P
Sbjct: 52  FLLALDIIEHRYQKGVLITTSGIPKFYSNGLDLELAQSTEGFLDKWLWKLFRRLLTYPMP 111

Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203
            +  L     +                +   + + +          +  V   +  P   
Sbjct: 112 TIALLNGHAFAGGFMLAMYHDYRIQNPSKGFLCINELEFGVPLQAPMMHVFREKLTPSVC 171

Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263
             V+ + + + G EA +VG++D +GG EE  + +    +    +        +  +   L
Sbjct: 172 RDVVLEAKRFPGPEALRVGIVDGLGGVEETLKFVKERKLVLMPKTEIYGVMKEEMYRRLL 231

Query: 264 K 264
            
Sbjct: 232 G 232


>gi|317403655|gb|EFV84143.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
           xylosoxidans C54]
          Length = 369

 Score = 36.1 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 69/228 (30%), Gaps = 46/228 (20%)

Query: 31  VEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86
                  V  I I  +I      ++  +  ++  +       ++VSL+SPGG  +   AI
Sbjct: 12  KAQAEKPVVEIRIYDEISFWGTTAEAFVAELDAAAA--GGADIVVSLNSPGGDVFDALAI 69

Query: 87  FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146
           + A+++             +        + A++            I +      +     
Sbjct: 70  YNALRR---------YAGRVTTRVDGFAASAAS-----------LIAMAGDQLIMPENAQ 109

Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
            +  +  ++                 + ++   D++D      V   +       DK + 
Sbjct: 110 LMIHNAWTITGG------------TAEDLRSTADMMDRVRDGVVAAYARKSGQDADKIVE 157

Query: 207 LSDGRIW-TGAEAKKVGLIDVV-------GGQEEVWQSLYALGVDQSI 246
           + D   W +  EA+ +G  D++          +   + L       + 
Sbjct: 158 MMDATTWMSALEAQALGFCDLIEDPVRLQMSSDLAAEVLRKHKNLPAE 205


>gi|170287818|ref|YP_001738056.1| hypothetical protein TRQ2_0011 [Thermotoga sp. RQ2]
 gi|170175321|gb|ACB08373.1| protein of unknown function DUF114 [Thermotoga sp. RQ2]
          Length = 284

 Score = 36.1 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 4/109 (3%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+E++  I+    D     ++    +PGG   A E I RA++     K  +   H  
Sbjct: 72  IEDSEEILRAIKLTPSDMPIDLIL---HTPGGLVLAAEQIARALKMH-KGKVTVFVPHYA 127

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155
            +    +   A  II+     L      +   P            +  V
Sbjct: 128 MSGGTLIALAADEIIMDENAVLGPLDPQIGNMPAPSILAAVKKKDVNEV 176


>gi|116617520|ref|YP_817891.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|227432636|ref|ZP_03914612.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|116096367|gb|ABJ61518.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|227351606|gb|EEJ41856.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 200

 Score = 36.1 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 2/116 (1%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I ++G+IEDS    ++ ++  +   D    + + ++SPGGS  AG +I   +  +K   
Sbjct: 27  IILVQGEIEDSMATSIVAQLLFLEAQDPTKEISMYINSPGGSVTAGLSITDTMNFIKAPV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
             I      +       S           +       +          D   ++ +
Sbjct: 87  TTIVMGLAASMGTIIAASGEKGHRFMLPNAEYLIHQPMGGAAGGTQQTDMAIIAEQ 142


>gi|253560560|gb|ACT32990.1| putative 3,2-trans-enoyl-CoA isomerase [Culex pipiens pipiens]
          Length = 132

 Score = 36.1 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSL 237
           +      +     D  L L+ G ++T  EA KVGL+D V    E+     
Sbjct: 17  WFMASMRNTMSRRDAELALTLGTLFTTDEALKVGLVDEVATSKEDAIAKA 66


>gi|315170930|gb|EFU14947.1| Clp protease [Enterococcus faecalis TX1342]
          Length = 247

 Score = 36.1 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 69/199 (34%), Gaps = 23/199 (11%)

Query: 40  RIAIRGQI----------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89
            + + G I           D++ + E ++ ++ D     + + L+SPGG  + G  I+  
Sbjct: 21  VLTLSGNIRKKYWSDDDVIDAKSIRETLDGVTED-----ITIKLNSPGGDVFEGVEIYNY 75

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149
           ++   ++  V      +AASA   I  A++  +    + V            K  + K  
Sbjct: 76  LKDHPSKVTVEV--TGVAASAATFILSAADEAIMNVGTSVMIHEASTFTWGNKQDIQKTL 133

Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW-----FVRLVSESRNIPYDKT 204
            +++++  S +        +   +    M++    +        F   V ++       +
Sbjct: 134 NALETIDDSILSIYSQKTGQTTDQLETWMKEEKWFTAEEAVEYGFATEVKKNTEKNSTDS 193

Query: 205 LVLSDGRIWTG-AEAKKVG 222
                  +    AEA  + 
Sbjct: 194 KENIAEMVKNAVAEAMSLN 212


>gi|88763676|gb|ABD49508.1| capsid protein [Wolbachia phage WO]
          Length = 113

 Score = 36.1 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
             FV+L++ +RN   +       G  + G  A +VGL D +    E    
Sbjct: 3   EMFVQLIARNRNFSIEVIKSTEAGLYF-GENAIEVGLADGITTFCEFINK 51


>gi|47027404|gb|AAT08780.1| capsid protein [Wolbachia phage WO]
          Length = 86

 Score = 36.1 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
              V+L++ +R +  +K   +++  ++ G +A ++GL D V    E   
Sbjct: 1   EMLVQLIARNRGLSIEKIR-ITEAGLYFGEKAVEIGLADGVTTFFEFIN 48


>gi|91076194|ref|XP_971998.1| PREDICTED: similar to caseinolytic protease, ATP-dependent,
           proteolytic subunit homolog [Tribolium castaneum]
 gi|270014730|gb|EFA11178.1| hypothetical protein TcasGA2_TC004785 [Tribolium castaneum]
          Length = 234

 Score = 36.1 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 59/193 (30%), Gaps = 31/193 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I D  S  ++ ++  +  + +   + + ++SPGGS  AG  I+  +Q +    
Sbjct: 50  IICLMGPINDPMSSLIVAQLLFLQSESTNKPIHMYINSPGGSVTAGLGIYDTMQYILPPI 109

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
                                      + + + S+ +    P ++  L    + I     
Sbjct: 110 ATWCV---------------------GQAASMASLLLAAGSPGMRHSLPHARIMIHQPSG 148

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                      +         Q       H  + L    R++  D           +  E
Sbjct: 149 GAQGQATDIKIQAEEILKLKSQINNLYVKHTGLALEKIERSMERD--------MFMSPVE 200

Query: 218 AKKVGLIDVVGGQ 230
           A+  G+ID +   
Sbjct: 201 AQSFGIIDKILTS 213


>gi|158522703|ref|YP_001530573.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfococcus
           oleovorans Hxd3]
 gi|259585950|sp|A8ZXB7|CLPP_DESOH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|158511529|gb|ABW68496.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfococcus
           oleovorans Hxd3]
          Length = 205

 Score = 36.1 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 65/203 (32%), Gaps = 33/203 (16%)

Query: 40  RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + I   I+D     LI ++  +  +D    +   ++SPGG   AG AI+  +Q +K+  
Sbjct: 29  IVFIGSAIDDETANLLIAQLLFLESEDPDKDINFYINSPGGKVSAGMAIYDTMQYIKSDI 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             +   H  +  A  L + A     +   S +     +                      
Sbjct: 89  ATVCIGHAASMGAFLLAAGAKGKRFSLPNSRIMIHQPMGGAQGQ---------------- 132

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                            + +    +        ++++     P ++  V +D   + +G 
Sbjct: 133 --------------ASDIAIQAKEILRMKDILNQILAHHTGKPLEQIQVDTDRDFFMSGE 178

Query: 217 EAKKVGLIDVVGGQEEVWQSLYA 239
           EAK  G++D V         L  
Sbjct: 179 EAKAYGIVDHVITDRSDLDKLEK 201


>gi|315165627|gb|EFU09644.1| Clp protease [Enterococcus faecalis TX1302]
          Length = 239

 Score = 36.1 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 65/195 (33%), Gaps = 15/195 (7%)

Query: 40  RIAIRGQIE----DSQELIER--IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
            + + G I        ++I+   I     D     + + L+SPGG  + G  I+  ++  
Sbjct: 21  VLTLSGNIRKKYWSDDDVIDAKSIRETL-DGVTDDITIKLNSPGGDVFEGVEIYNYLKDH 79

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
            ++  V      +AASA   I  A++  +    + V            K  + K   +++
Sbjct: 80  PSKVTVEV--TGVAASAATFILSAADEAIMNVGTSVMIHEASTFTWGNKQDIQKTLNALE 137

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW-----FVRLVSESRNIPYDKTLVLS 208
           ++  S +        +   +    M++    +        F   V ++       +    
Sbjct: 138 TIDDSILSIYSQKTGQTTDQLETWMKEEKWFTAEEAVEYGFATEVKKNTEKNSTDSKENI 197

Query: 209 DGRIWTG-AEAKKVG 222
              +    AEA  + 
Sbjct: 198 AEMVKNAVAEAMSLN 212


>gi|295695466|ref|YP_003588704.1| protein of unknown function DUF114 [Bacillus tusciae DSM 2912]
 gi|295411068|gb|ADG05560.1| protein of unknown function DUF114 [Bacillus tusciae DSM 2912]
          Length = 276

 Score = 36.1 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 15/168 (8%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS++++  I     D       + L +PGG   A E I  A++       V   V   
Sbjct: 65  IEDSEQVLRAIRLTPDDMPID---LVLHTPGGLVLAAEQIAAALKAHPAD--VTVYVPHY 119

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           A S G LI+ A++ IV  E +++G +            L          ++  +  E   
Sbjct: 120 AMSGGTLIALAADRIVMDENAVLGPVDPQLGQWPAASILRLTRTK----EAKDIDDETWI 175

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214
            +++  KA+  +++ V +                      +     WT
Sbjct: 176 MADMAEKAIHQVREFVANLLREHFTDNQAR------DLAEILSEGTWT 217


>gi|313216516|emb|CBY37812.1| unnamed protein product [Oikopleura dioica]
          Length = 271

 Score = 36.1 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%)

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L  G +++G  A ++GLID +   +++ + +            K     K     D  N
Sbjct: 173 ALQLGHLYSGERALEIGLIDELVEPDDMMERVIENLKLWLKVPPKARAITKQLLRQDTAN 232

Query: 266 LSISSLLEDTIPLMK 280
             IS   +D    +K
Sbjct: 233 KLISKKEQDIETFVK 247


>gi|301060520|ref|ZP_07201360.1| ATP-dependent Clp protease, proteolytic subunit ClpP [delta
           proteobacterium NaphS2]
 gi|300445363|gb|EFK09288.1| ATP-dependent Clp protease, proteolytic subunit ClpP [delta
           proteobacterium NaphS2]
          Length = 202

 Score = 36.1 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 67/205 (32%), Gaps = 33/205 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I I  Q+ D  +  +I ++  +  +D    + + ++SPGGS  AG AI+  +Q +K   
Sbjct: 28  IIFITDQVADPMANTVIAQMLFLESEDPEKDIHMYINSPGGSVTAGLAIYDTMQYIKPDV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L + A     A   S +     L         +D     I  +  
Sbjct: 88  ATICMGQTSSMAALLLAAGAKEKRYALPHSRIMIHQPLGGAQGQATDIDIHAREILKI-- 145

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216
                                            ++++E       +    ++   +    
Sbjct: 146 ----------------------------RDNLNQILAEHTGTDIKRIRKDTERDFFMDSQ 177

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALG 241
           +AK  G+ID V  + E+   L    
Sbjct: 178 QAKDYGIIDRVIHKREIKDLLTEEK 202


>gi|260587185|ref|ZP_05853098.1| ClpP protease family protein [Blautia hansenii DSM 20583]
 gi|260542380|gb|EEX22949.1| ClpP protease family protein [Blautia hansenii DSM 20583]
          Length = 416

 Score = 36.1 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 32/182 (17%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           +  +E +    +D     + V L+S GG  Y G AI  A++ +     VI     +AASA
Sbjct: 65  EGFMEDL-AAVKDKG--HITVKLNSCGGDLYTGIAIHNALKALSGEVNVIV--EGIAASA 119

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
             +I CA + +     SL+   GV           D                      ++
Sbjct: 120 ASVIMCAGDTVTVYPGSLIMIHGVSVMLWDYMNMQD--------------------MKQL 159

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                   + V +         V   R++   +         +TG EA + G  D +   
Sbjct: 160 MKGMDASERAVAEIYNSKTGIEVDTLRSMMTKE-------TWFTGREALEKGFADAIKED 212

Query: 231 EE 232
           E+
Sbjct: 213 ED 214


>gi|313236569|emb|CBY19861.1| unnamed protein product [Oikopleura dioica]
          Length = 271

 Score = 36.1 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%)

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265
            L  G +++G  A ++GLID +   +++ + +            K     K     D  N
Sbjct: 173 ALQLGHLYSGERALEIGLIDELVEPDDMMERVIENLKLWLKVPPKARAITKQLLRQDTAN 232

Query: 266 LSISSLLEDTIPLMK 280
             IS   +D    +K
Sbjct: 233 KLISKKEQDIETFVK 247


>gi|296158498|ref|ZP_06841329.1| Enoyl-CoA hydratase/isomerase [Burkholderia sp. Ch1-1]
 gi|295891442|gb|EFG71229.1| Enoyl-CoA hydratase/isomerase [Burkholderia sp. Ch1-1]
          Length = 337

 Score = 36.1 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
               ++  GR  +  EA  +GLID +G  +++   
Sbjct: 153 AALDLILSGRHASSKEALALGLIDRLGSSDDILAE 187


>gi|254283061|ref|ZP_04958029.1| membrane-bound serine protease [gamma proteobacterium NOR51-B]
 gi|219679264|gb|EED35613.1| membrane-bound serine protease [gamma proteobacterium NOR51-B]
          Length = 477

 Score = 36.1 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 6/225 (2%)

Query: 30  HVEDNSPHVARIAIRGQIEDSQ-ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88
             +     V  + +   I  +  + ++R    +  + A  LI++L +PGG   +   + +
Sbjct: 24  SAQPEQRSVFLLTVADAITPATMDYVQRGIAYAESEGAELLIIALDTPGGLMASTHDLIK 83

Query: 89  AIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
           +I   +             AASAG  I  AS++   A  + +GS   +          D 
Sbjct: 84  SILASRVPVATYVYPSGSRAASAGAYIVLASHVAAMAPATHIGSATPVQIGGLPSLPSDD 143

Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES--RNIPYDKTL 205
             V+ ++      + +  P    +  A   M+  V      ++R ++    RN  + +  
Sbjct: 144 APVTPEAPMEQGAEPQNLPAQSPSAAAPSAMERKVLEDAVSYIRELAARHDRNSDWAE-R 202

Query: 206 VLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKI 249
            + D       EA    +ID+V    +E+ Q++    V  +  ++
Sbjct: 203 AVRDAANLGAQEALAQNVIDLVADDIDELLQAIDGRVVRMAYGEV 247


>gi|197105990|ref|YP_002131367.1| enoyl-CoA hydratase/carnithine racemase [Phenylobacterium zucineum
           HLK1]
 gi|196479410|gb|ACG78938.1| enoyl-CoA hydratase/carnithine racemase [Phenylobacterium zucineum
           HLK1]
          Length = 258

 Score = 36.1 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 21/67 (31%)

Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272
            +  EA  +GLI  V G ++V     ALG   +          +     +      + +L
Sbjct: 173 LSAQEALDIGLITRVAGDDDVVAEAVALGEKLAAAPALQMQLTRELLRENSGEHDANVVL 232

Query: 273 EDTIPLM 279
                  
Sbjct: 233 ARETEAF 239


>gi|320451100|ref|YP_004203196.1| periplasmic serine protease [Thermus scotoductus SA-01]
 gi|320151269|gb|ADW22647.1| periplasmic serine protease [Thermus scotoductus SA-01]
          Length = 277

 Score = 36.1 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           I+DS++++  I     D +   + + L +PGG   A E I  A+ +   +  V   V   
Sbjct: 68  IDDSEQVLRAIR--LTDKNVP-IDLILHTPGGLVLAAEQIAEALLRHPAK--VTVFVPHY 122

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           A S G LI+ A++ IV  E +++G +            L  L    
Sbjct: 123 AMSGGTLIALAADEIVMDENAVLGPVDPQLGQYPAASILKVLEKKP 168


>gi|281487007|gb|ADA71055.1| putative capsid protein [Wolbachia phage WO]
          Length = 118

 Score = 36.1 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  FV+L++ +R +  +K      G  + G +A ++G+ D V    E   +  +  V  +
Sbjct: 13  YEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGVADGVTTFFEFINNHKSRSVSMT 71

Query: 246 IRKIKDWNPPK 256
             ++ +     
Sbjct: 72  TNELTEEGYEN 82


>gi|92115975|ref|YP_575704.1| hypothetical protein Nham_0348 [Nitrobacter hamburgensis X14]
 gi|91798869|gb|ABE61244.1| protein of unknown function DUF107 [Nitrobacter hamburgensis X14]
          Length = 465

 Score = 36.1 bits (81), Expect = 6.4,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 4/107 (3%)

Query: 24  YFSWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAY 81
           +    +  E+N   V  IAI G I  +    + + + +      A A+I+ L++PGG A 
Sbjct: 19  FSPLPASTEENGKLVLTIAIDGAIGPATTGYVKDALAKARE-RHAEAVILRLNTPGGLAS 77

Query: 82  AG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +  E I   +         +      AASAG  I  A++I   A  +
Sbjct: 78  SMREIIADVLASPVPVIGYVAPSGAHAASAGTYILYATHIAAMAPGT 124


>gi|328720470|ref|XP_003247040.1| PREDICTED: probable ubiquitin carboxyl-terminal hydrolase
           FAF-X-like isoform 2 [Acyrthosiphon pisum]
 gi|328720472|ref|XP_001946927.2| PREDICTED: probable ubiquitin carboxyl-terminal hydrolase
           FAF-X-like isoform 1 [Acyrthosiphon pisum]
          Length = 2593

 Score = 36.1 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 30/262 (11%), Positives = 76/262 (29%), Gaps = 37/262 (14%)

Query: 51  QELIERIERISRDDS-----ATALIVSLSSPGGSAYAGEAIFRAIQKV------------ 93
           ++L+E I R++ DD         L++  +   G   + E I +A+               
Sbjct: 508 EKLLELIRRLAEDDKDGVMAHKVLMLFWNLAHGEDVSTEIIDQALSAHVKILDYSCAQDR 567

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
             +K    +       +           +     L  S  V            +  ++  
Sbjct: 568 DAQKTAWLDKCVDELKSNSSWVLPVLKHMRDICMLYDSSPVGAHQAPAHTLYRQEIIAR- 626

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV------- 206
               +           ++     + +   ++          + R     +          
Sbjct: 627 --LQNNHTLVSLVTDNLSKYMDDVRKVAQENHNLDPANYYPDGRYCHLQQVQERLYFLKF 684

Query: 207 -LSDGRIWT-GAEAKK--VGLIDV---VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259
            L DG +W    +A +  + L +    +  +E  ++    L  ++      D +    ++
Sbjct: 685 CLKDGNLWLCAEQAHQVWIALAEKAVFLADREACFRWFSKLMGEEPD---IDPSINTKFF 741

Query: 260 FCDLKNLSISSLLEDTIPLMKQ 281
             +L  L  + L E+ I   ++
Sbjct: 742 INNLLQLDPTLLTENGIKCFER 763


>gi|170734224|ref|YP_001766171.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Burkholderia
           cenocepacia MC0-3]
 gi|169817466|gb|ACA92049.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Burkholderia
           cenocepacia MC0-3]
          Length = 708

 Score = 36.1 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 15/36 (41%)

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
                ++  GR  +  EA  +GL+D +   ++    
Sbjct: 154 KAALDLMLTGRHASAEEALALGLVDRIAHSDDTLAE 189


>gi|107023812|ref|YP_622139.1| 3-hydroxyacyl-CoA dehydrogenase, NAD-binding [Burkholderia
           cenocepacia AU 1054]
 gi|105894001|gb|ABF77166.1| 3-hydroxyacyl-CoA dehydrogenase [Burkholderia cenocepacia AU 1054]
          Length = 708

 Score = 36.1 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 15/36 (41%)

Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
                ++  GR  +  EA  +GL+D +   ++    
Sbjct: 154 KAALDLMLTGRHASAEEALALGLVDRIAHSDDTLAE 189


>gi|281487011|gb|ADA71057.1| putative capsid protein [Wolbachia phage WO]
          Length = 118

 Score = 36.1 bits (81), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  FV+L++ +R +  +K      G  + G +A ++G+ D V    E   +  +  V  +
Sbjct: 13  YEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGVADGVTTFFEFINNHKSRSVSMT 71

Query: 246 IRKIKDWNPPK 256
             ++ +     
Sbjct: 72  TNELTEEGYEN 82


>gi|153814261|ref|ZP_01966929.1| hypothetical protein RUMTOR_00470 [Ruminococcus torques ATCC 27756]
 gi|145848657|gb|EDK25575.1| hypothetical protein RUMTOR_00470 [Ruminococcus torques ATCC 27756]
          Length = 268

 Score = 36.1 bits (81), Expect = 6.6,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 64/212 (30%), Gaps = 35/212 (16%)

Query: 41  IAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           + + G I D      E+  ++ +   +     + V ++SPGG  +A   I+  ++  K  
Sbjct: 23  LFLNGMISDETWYGDEVTPQLFKDELNAGNGNITVWINSPGGDVFAAAQIYNMLRDYKGS 82

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
             V                     I     S    I +      V P    +  +  ++ 
Sbjct: 83  VTV--------------------KIDGIAASAASVIAMAGDTVCVSPVAMMMIHNPATMA 122

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216
               K      + +N      +++ + ++Y +   L     +   D          +   
Sbjct: 123 MGEAKDMQKAIAMLNE-----VKESILNAYEFKTGLTRARLSHMMDDE------TWFNAK 171

Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
           +A ++G  D +    +  +        +   +
Sbjct: 172 KAVELGFADKILFDSDEDEKKKKPDEPEEKPE 203


>gi|254776325|ref|ZP_05217841.1| enoyl-CoA hydratase [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 257

 Score = 36.1 bits (81), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           +  GR +   EA  +GLID +   ++V+ +  A  
Sbjct: 167 VFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWA 201


>gi|257439336|ref|ZP_05615091.1| ClpP protease family protein [Faecalibacterium prausnitzii A2-165]
 gi|283798244|ref|ZP_06347397.1| ClpP protease family protein [Clostridium sp. M62/1]
 gi|257198211|gb|EEU96495.1| ClpP protease family protein [Faecalibacterium prausnitzii A2-165]
 gi|291074025|gb|EFE11389.1| ClpP protease family protein [Clostridium sp. M62/1]
          Length = 416

 Score = 36.1 bits (81), Expect = 6.7,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 32/182 (17%)

Query: 51  QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110
           +  +E +    +D     + V L+S GG  Y G AI  A++ +     VI     +AASA
Sbjct: 65  EGFMEDL-AAVKDKG--HITVKLNSCGGDLYTGIAIHNALKALSGEVNVIV--EGIAASA 119

Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170
             +I CA + +     SL+   GV           D                      ++
Sbjct: 120 ASVIMCAGDTVTVYPGSLIMIHGVSVMLWDYMNMQD--------------------MKQL 159

Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230
                   + V +         V   R++   +         +TG EA + G  D +   
Sbjct: 160 MKGMDASERAVAEIYNSKTGIEVDTLRSMMTKE-------TWFTGREALEKGFADAIKED 212

Query: 231 EE 232
           E+
Sbjct: 213 ED 214


>gi|127512714|ref|YP_001093911.1| hypothetical protein Shew_1786 [Shewanella loihica PV-4]
 gi|126638009|gb|ABO23652.1| protein of unknown function DUF107 [Shewanella loihica PV-4]
          Length = 500

 Score = 36.1 bits (81), Expect = 6.7,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 18/237 (7%)

Query: 27  WSSHVEDNSPH-VARIAIRGQIEDS--QELIERIERISRDD---SATALIVSLSSPGGSA 80
            S   +  +P  +  +   G I  +  + L E I+  +R         +++ L +PGG  
Sbjct: 35  NSESAQQTTPQPIPLLQFSGAIGPAIGEYLSEEIDHANRLPAELRPELIMIVLDTPGGLV 94

Query: 81  YAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139
            +  +I +AI   K      +      A SAG  +  A +I   A  + +G+   +    
Sbjct: 95  TSLRSINQAILASKIPIACLVAPPGARAMSAGTYMLYACHIAAMAPATTLGAATPVQLGM 154

Query: 140 YVKPFLDKLGVSIKSVKS---------SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
              P     G    S                A  S            M   V +    ++
Sbjct: 155 PSSPQDSGSGSGSGSDPKESGSQDKAAQKDGAGQSTPESTPKDNKDAMAHKVLNDAVAYI 214

Query: 191 RLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQS 245
           R ++  R    +     + D    T  EA    +ID++    +E+   L    V   
Sbjct: 215 RSLANLRGRNVEFAERAVIDAATLTSDEALAQNVIDLIAADPQELVAKLEGFSVVVD 271


>gi|296108638|ref|YP_003620339.1| transmembrane protein [Legionella pneumophila 2300/99 Alcoy]
 gi|295650540|gb|ADG26387.1| transmembrane protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 435

 Score = 36.1 bits (81), Expect = 6.7,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 76/236 (32%), Gaps = 30/236 (12%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSS 75
           + + +  F         +  +  + I+G I    +  L   I+       A  +++ + +
Sbjct: 6   IFIFLTLFLLVGLQTSFAAKIVELNIKGPIGPATADYLERGIKSAQD---ADLIVILIDT 62

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
           PGG     ++    IQ        I                      +A T L+ +  + 
Sbjct: 63  PGGL---YDSTRNIIQLFLLSDVPIVTYVSPTG----------ARAASAGTYLMYASTLA 109

Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
              P  +                            + K    M++ V       +R +++
Sbjct: 110 AMAPGTQMGAASPVSLGTGFSEGEK----------DEKKKSTMENKVTHDAVATIRSLAQ 159

Query: 196 SRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKI 249
            R    D     +++G+  T  EA   G+++ +   ++++   ++ + V Q+ + I
Sbjct: 160 LRGRDPDFAEKAVTEGKSITANEALSKGVVNYIAKNRDDLLSQIHGIKVSQNNKTI 215


>gi|281487001|gb|ADA71052.1| putative capsid protein [Wolbachia phage WO]
          Length = 118

 Score = 36.1 bits (81), Expect = 6.7,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  FV+L++ +R +  +K      G  + G +A ++G+ D V    E   +  +  V  +
Sbjct: 13  YEMFVQLIARNRGLSTEKIRSTEAGLYF-GEKAVEIGVADGVTTFFEFINNHKSRSVSMT 71

Query: 246 IRKIKDWNPPK 256
             ++ +     
Sbjct: 72  TNELTEEGYEN 82


>gi|206896036|ref|YP_002246921.1| periplasmic serine protease [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738653|gb|ACI17731.1| periplasmic serine protease [Coprothermobacter proteolyticus DSM
           5265]
          Length = 264

 Score = 36.1 bits (81), Expect = 6.7,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 64/182 (35%), Gaps = 12/182 (6%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105
            +EDS+ ++  I     D       + L +PGG   A E I RA+     +  VI   + 
Sbjct: 51  TMEDSEAVLTAIRSTPPDTPID---LVLHTPGGLVLAAEQIARALYMHPAKTTVIIPHYA 107

Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS-IKSVKSSPMKAEP 164
           M+   G LI+ A++ I+  + +++G +            L  +    +++V    +    
Sbjct: 108 MSG--GTLIALAADQIIMDKHAVIGPLDPQINGLPAASILQAVKDKGVQNVDDQTLILAD 165

Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL- 223
                ++     +   +           V+             +        EAK++ L 
Sbjct: 166 ISRKAIDQVKDTVKWFLRKHMDEEKAEEVA-----TLLCEGYYTHDNPIFAEEAKQLNLN 220

Query: 224 ID 225
           ID
Sbjct: 221 ID 222


>gi|41409185|ref|NP_962021.1| enoyl-CoA hydratase [Mycobacterium avium subsp. paratuberculosis
           K-10]
 gi|81413435|sp|Q73VC7|ECH17_MYCPA RecName: Full=Probable enoyl-CoA hydratase echA17
 gi|41398005|gb|AAS05635.1| EchA17 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 257

 Score = 36.1 bits (81), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241
           +  GR +   EA  +GLID +   ++V+ +  A  
Sbjct: 167 VFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWA 201


>gi|297572087|ref|YP_003697861.1| peptidase S14 ClpP [Arcanobacterium haemolyticum DSM 20595]
 gi|296932434|gb|ADH93242.1| peptidase S14 ClpP [Arcanobacterium haemolyticum DSM 20595]
          Length = 277

 Score = 35.7 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 59/209 (28%), Gaps = 37/209 (17%)

Query: 26  SWSSHVEDNSPHVARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAY 81
           + +++          + I G I +      ++   +        +  + V ++SPGG   
Sbjct: 11  APNNNDPAGDDTRRVLRINGVIAEESWFDDDITPALFASELAAGSGDVTVWINSPGGDVV 70

Query: 82  AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141
           A   I+  +  +     V   +  +AASA  +I+ A  ++  +  S++            
Sbjct: 71  AAAQIYNML--IDYPGHVKVCIDGIAASAASVIAMAGEVVAMSPVSMLMIHNPATLAVGD 128

Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
              L ++                                ++ +     +        +  
Sbjct: 129 AEELGRVID------------------------------MLAAVKESIINAYELKTGMSR 158

Query: 202 DKTLVLSDGRIWT-GAEAKKVGLIDVVGG 229
            K   L D   W     A  +G  D    
Sbjct: 159 AKLARLMDQETWMDARAAIAMGFADDYLT 187


>gi|281487003|gb|ADA71053.1| putative capsid protein [Wolbachia phage WO]
          Length = 118

 Score = 35.7 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  FV+L++ +R +  +K      G  + G +A ++G+ D V    E   +  +  V  +
Sbjct: 13  YEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGVADGVTTFFEFINNHKSRSVSMT 71

Query: 246 IRKIKDWNPPK 256
             ++ +     
Sbjct: 72  TNELTEEGYEN 82


>gi|78212385|ref|YP_381164.1| ATP-dependent Clp protease-like protein [Synechococcus sp. CC9605]
 gi|78196844|gb|ABB34609.1| Endopeptidase Clp [Synechococcus sp. CC9605]
          Length = 225

 Score = 35.7 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 22/186 (11%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           I+ ++ +I ++  +  D+    +   ++S G S Y+GEAI    +        I +    
Sbjct: 52  IDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYSGEAIGFETEAFA-----ICDTLRY 106

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
                + I     +  AA     G+ G     P     L +     +             
Sbjct: 107 VKPPVHTICIGQAMGTAAVILSAGTKGQRAALPNSSIVLHQPRSGARG------------ 154

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLID 225
                   +Q+    V  +    + ++S +     ++    SD   + T  +A + GLID
Sbjct: 155 ----QATDIQIRAKEVLHNKQAMLEILSTNTGRSVEELSKDSDRMSYLTPQQAVEYGLID 210

Query: 226 VVGGQE 231
            V    
Sbjct: 211 RVLSSR 216


>gi|159129874|gb|EDP54988.1| enoyl-CoA hydratase/isomerase family protein [Aspergillus fumigatus
           A1163]
          Length = 288

 Score = 35.7 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG-------VDQSIRKIKDWNPPKN 257
            ++ + R + G ++  VGL+D VGG EE  Q +   G             K + +    +
Sbjct: 188 DLILEARRFAGPQSVAVGLVDGVGGLEETLQLIRERGLQTKAATGIYGTMKEEMYRHTLD 247

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                  NL+    +E+     ++  ++ + A
Sbjct: 248 ILDNHAGNLAWREQVEEKKGTREEAALRAVEA 279


>gi|294780291|ref|ZP_06745660.1| Clp protease [Enterococcus faecalis PC1.1]
 gi|294452555|gb|EFG20988.1| Clp protease [Enterococcus faecalis PC1.1]
          Length = 239

 Score = 35.7 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 65/195 (33%), Gaps = 15/195 (7%)

Query: 40  RIAIRGQIE----DSQELIER--IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
            + + G I        ++I+   I     D     + + L+SPGG  + G  I+  ++  
Sbjct: 21  VLTLSGNIRKKYWSDDDVIDAKSIRETL-DGVTDDITIKLNSPGGDVFEGVEIYNYLKDH 79

Query: 94  KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153
            ++  V      +AASA   I  A++  +    + V            K  + K   +++
Sbjct: 80  PSKVTVEV--TGVAASAATFILSAADEAIMNVGTSVMIHEASTFTWGNKQDIQKTLNALE 137

Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW-----FVRLVSESRNIPYDKTLVLS 208
           ++  S +        +   +    M++    +        F   V ++       +    
Sbjct: 138 TIDDSILSIYSQKTGQTTDQLETWMKEEKWFTAEEAVEYGFATEVKKNTEKNSTDSKENI 197

Query: 209 DGRIWTG-AEAKKVG 222
              +    AEA  + 
Sbjct: 198 AEMVKNAVAEAMSLN 212


>gi|126442937|ref|YP_001061915.1| NfeD family protein [Burkholderia pseudomallei 668]
 gi|126222428|gb|ABN85933.1| NfeD family protein [Burkholderia pseudomallei 668]
          Length = 503

 Score = 35.7 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 76/239 (31%), Gaps = 15/239 (6%)

Query: 7   KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDD 64
           ++    V++ L+       +  +     +P +  I + G I    +  ++  +ER +R+ 
Sbjct: 18  RLARAAVLIGLLLACAAAAAAGAAAAARAP-IVVIPVAGAIGPASADFVVRGLERAAREH 76

Query: 65  SATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVA 123
           +  A++  L +PGG   +   I +AI          +      AASAG  I  AS++   
Sbjct: 77  APLAIV-QLDTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARAASAGTYIVYASHVAAM 135

Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183
           A  + +G+   +      +                   A  +  +          +  + 
Sbjct: 136 APGTNLGAASPVQLGIGGQAPAGGRREP--------AGAPGAAGAGATDTESTETRKALH 187

Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242
            +  +   L              + +       +A    ++D++    +       L  
Sbjct: 188 DAAAYIRGLAQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLAN--DPADLAAKLDG 244


>gi|238231330|dbj|BAH60842.1| L-arabinose isomerase [Corynebacterium glutamicum]
          Length = 503

 Score = 35.7 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 24/246 (9%), Positives = 71/246 (28%), Gaps = 11/246 (4%)

Query: 46  QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE---AIFRAIQKVKNRKPVITE 102
            + +S  +++ +   S +D+   +I  + +   +        A+ + +  +  +      
Sbjct: 55  VLTNSDAIVKAMVEASANDNVIGVITWMHTFSPAKMWIRGLNALRKPLLHLHTQANEQLP 114

Query: 103 VHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161
              +      L   A  +       + +G   V       +  + K   +     +   +
Sbjct: 115 WSSIDMDFMNLNQAAHGDREFGYILTRMGIPRVSVVGHTTEERVGKRIGTWVRAAAGWNE 174

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221
           A+             +     D +       VS +     D    + +       +A+  
Sbjct: 175 AQHLTMVRFGDNMRDVAVTEGDKTEAEIRFGVSVNTWGVNDLVAEVENVT-----DAQVD 229

Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281
            LI+      E+  +L      +S   ++     +      L+  +  +  +    L   
Sbjct: 230 ALINEYEDIYEIEAALAK--GGESHDALRYATKQEVAIRTILERENAGAFTDTFEDLGGL 287

Query: 282 TKVQGL 287
            ++ G 
Sbjct: 288 RQLPGF 293


>gi|52145326|gb|AAU29367.1| putative capsid protein [Wolbachia phage WO]
          Length = 118

 Score = 35.7 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  F++L++ +R +  +K      G  + G +A ++G+ D V    E   +  +  V  +
Sbjct: 13  YEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGVADGVTTFFEFINNHKSRSVSMT 71

Query: 246 IRKIKDWNPPK 256
             ++ +     
Sbjct: 72  TNELTEEGYEN 82


>gi|71002272|ref|XP_755817.1| enoyl-CoA hydratase/isomerase family protein [Aspergillus fumigatus
           Af293]
 gi|66853455|gb|EAL93779.1| enoyl-CoA hydratase/isomerase family protein [Aspergillus fumigatus
           Af293]
          Length = 288

 Score = 35.7 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG-------VDQSIRKIKDWNPPKN 257
            ++ + R + G ++  VGL+D VGG EE  Q +   G             K + +    +
Sbjct: 188 DLILEARRFAGPQSVAVGLVDGVGGLEETLQLIRERGLQTKAATGIYGTMKEEMYRHTLD 247

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                  NL+    +E+     ++  ++ + A
Sbjct: 248 ILDNHAGNLAWREQVEEKKGTREEAALRAVEA 279


>gi|52145324|gb|AAU29366.1| putative capsid protein [Wolbachia phage WO]
          Length = 118

 Score = 35.7 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  F++L++ +R +  +K      G  + G +A ++G+ D V    E   +  +  V  +
Sbjct: 13  YEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGVADGVTTFFEFINNHKSRSVSMT 71

Query: 246 IRKIKDWNPPK 256
             ++ +     
Sbjct: 72  TNELTEEGYEN 82


>gi|170077810|ref|YP_001734448.1| ATP-dependent Clp protease-like protein [Synechococcus sp. PCC
           7002]
 gi|169885479|gb|ACA99192.1| Clp protease [Synechococcus sp. PCC 7002]
          Length = 228

 Score = 35.7 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 61/176 (34%), Gaps = 22/176 (12%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +I ++  +  DD    + + ++S G S Y G++I    +        I +         +
Sbjct: 60  IIAQLLFLQFDDPDKPIYMYINSTGTSWYGGDSIGFETEAFA-----ICDTLNYITPPVH 114

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172
            I     +  AA     G+ G     P+    L +     +                   
Sbjct: 115 TICLGQAMGTAAMILAAGTKGCRASLPHSTIILHQARQGAQG----------------QA 158

Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
             +Q+    V  +    ++++S+    P +K    +D   + T  +A + G+ID V
Sbjct: 159 SDIQIRAKEVIENKRTILQMMSKYTGQPLEKLEKDTDRMFYMTPQQALEYGIIDKV 214


>gi|124267844|ref|YP_001021848.1| 3-hydroxybutyryl-CoA dehydratase [Methylibium petroleiphilum PM1]
 gi|124260619|gb|ABM95613.1| 3-hydroxybutyryl-CoA dehydratase [Methylibium petroleiphilum PM1]
          Length = 269

 Score = 35.7 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/103 (12%), Positives = 31/103 (30%), Gaps = 7/103 (6%)

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246
               RL+   R         +  GRI   A A ++GL+  +   ++  +    +  +  +
Sbjct: 150 QRLSRLIGAGR-----AIEFILRGRIVEPAVALEMGLVHELA--DDALRRAQQIAHEMVL 202

Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                    K   +        + L  +    ++     G  +
Sbjct: 203 TPPFAMAMAKRAVYEGSDTSLAAGLKLEGERFLETMLSDGSVS 245


>gi|19921018|ref|NP_609323.1| CG4594 [Drosophila melanogaster]
 gi|7297575|gb|AAF52829.1| CG4594 [Drosophila melanogaster]
 gi|16769162|gb|AAL28800.1| LD18769p [Drosophila melanogaster]
 gi|220942742|gb|ACL83914.1| CG4594-PA [synthetic construct]
 gi|220952946|gb|ACL89016.1| CG4594-PA [synthetic construct]
          Length = 280

 Score = 35.7 bits (80), Expect = 7.5,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQS 236
               L+ GR++T  EA +VGLID +    EE  + 
Sbjct: 178 AERALTQGRMFTTQEAFEVGLIDEIASSKEEALEK 212


>gi|11467286|ref|NP_043143.1| ATP-dependent Clp protease proteolytic subunit [Cyanophora
           paradoxa]
 gi|11467404|ref|NP_043261.1| ATP-dependent Clp protease proteolytic subunit [Cyanophora
           paradoxa]
 gi|3023515|sp|Q36863|CLPP1_CYAPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|1016087|gb|AAA81174.1| ClpP1 protease subnit [Cyanophora paradoxa]
 gi|1016205|gb|AAA81292.1| subunit of ClpP protease [Cyanophora paradoxa]
          Length = 194

 Score = 35.7 bits (80), Expect = 7.5,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 55/177 (31%), Gaps = 31/177 (17%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111
            ++ ++  +  +DS   + + ++SPGGS  AG +++  IQ +      I      +  A 
Sbjct: 43  SIVGQLLYLENEDSTKDIRLFINSPGGSVTAGLSVYDTIQNLSVDVSTICFGLAASMGAV 102

Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171
            L +   N   A  +S +     L +       LD                         
Sbjct: 103 LLAAGVENKRFAFASSRIMIHQPLSKVEAPWSHLD------------------------- 137

Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227
                +         +    ++S        +           +  EAK+ G+ID +
Sbjct: 138 -----IQIRNGAYFKNLLNNILSFHTKQELKQIETDTERDFFLSATEAKQYGIIDHI 189


>gi|6723199|dbj|BAA89608.1| capsid protein [Bacteriophage WO]
          Length = 123

 Score = 35.7 bits (80), Expect = 7.5,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
           Y  FV+L++ +R +  +K      G  + G +A ++GL D V    E    
Sbjct: 13  YEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTAFFEFINK 62


>gi|288800853|ref|ZP_06406310.1| Clp protease [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332314|gb|EFC70795.1| Clp protease [Prevotella sp. oral taxon 299 str. F0039]
          Length = 222

 Score = 35.7 bits (80), Expect = 7.5,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 57/190 (30%), Gaps = 31/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I +   I+D  +  L  ++  +   DS   + + ++SPGGS  AG  I+  +Q + +  
Sbjct: 57  IIFLGTPIDDYTANTLQAQLLYLDSVDSGKDISIYINSPGGSVTAGLGIYDTMQFITSDV 116

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L+S A     A     V     L          D    + + +K 
Sbjct: 117 ATICTGMAASMAAVLLVSGAEGKRSALPHGRVMIHQPLGGVQGQAS--DIEIEAREIIKM 174

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
                         P          +                              T  E
Sbjct: 175 KKELYTIISDHSHTPFDKVWQDSDRNYWM---------------------------TAEE 207

Query: 218 AKKVGLIDVV 227
           AK+ G+ID V
Sbjct: 208 AKEYGMIDTV 217


>gi|169351385|ref|ZP_02868323.1| hypothetical protein CLOSPI_02165 [Clostridium spiroforme DSM 1552]
 gi|169291607|gb|EDS73740.1| hypothetical protein CLOSPI_02165 [Clostridium spiroforme DSM 1552]
          Length = 190

 Score = 35.7 bits (80), Expect = 7.7,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 43/101 (42%), Gaps = 2/101 (1%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G I+D  +  ++ ++  +   D++  + + ++SPGGS  AG AI+  +  +K   
Sbjct: 29  IILLTGTIDDKMASSIVGQLLYLESIDNSADIYMYINSPGGSINAGMAIYDTMNFIKCDV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
             I      + +A  L +       +   S +     L  +
Sbjct: 89  STIVIGMAASMAAFLLSAGTKGKRCSLPNSEIMIHQPLGAF 129


>gi|326668469|ref|XP_688205.4| PREDICTED: xin actin-binding repeat-containing protein 2 [Danio
            rerio]
          Length = 3315

 Score = 35.7 bits (80), Expect = 7.8,   Method: Composition-based stats.
 Identities = 15/209 (7%), Positives = 54/209 (25%), Gaps = 11/209 (5%)

Query: 70   IVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCASNIIVAAET 126
            I    +        E   + ++  +     K  +     M  +       A++       
Sbjct: 1068 IFENQTSDIMTSTSEETMQKLKCHQTEDIQKGNVVNCTWMFENQSIDSIKANSEDFKESR 1127

Query: 127  SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
            ++    G        +   +   +     +SS  +                +++      
Sbjct: 1128 TVTDIQG--GNVDKGRFIFETYSLDKIQEESSETEISKLQSIIHKEIEKGDVKNYTMMFE 1185

Query: 187  HWFVRLVSESRNIPYDKT----LVLSDGRIWTGAEAKKVGLIDVVGGQEE--VWQSLYAL 240
               +  + +     ++ T      +  G +       +   ID +   +E  V +++   
Sbjct: 1186 TQPLYAIKDKEGHYHEVTTVTKEEILRGDVVGARWLFETKPIDSIKDTDEVYVIKAVTQE 1245

Query: 241  GVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
             + +       W           +++ ++
Sbjct: 1246 DIQKGDVSTARWRFETQPLDEIAEDMKVA 1274


>gi|218296504|ref|ZP_03497232.1| Enoyl-CoA hydratase/isomerase [Thermus aquaticus Y51MC23]
 gi|218243046|gb|EED09578.1| Enoyl-CoA hydratase/isomerase [Thermus aquaticus Y51MC23]
          Length = 271

 Score = 35.7 bits (80), Expect = 7.8,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 6/82 (7%)

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG-VDQSIRKIKDWNP 254
            R        ++  GR  T  EA  +GL++ VG  E+  +    L         I     
Sbjct: 167 GRGR---ALDLIFTGRHVTAEEALSMGLVNRVG--EDALEEARKLAEKILKNAPIALALA 221

Query: 255 PKNYWFCDLKNLSISSLLEDTI 276
            ++    +  +L+ +  +E  +
Sbjct: 222 KESVVRGEGLDLAEALEIEADL 243


>gi|251797708|ref|YP_003012439.1| binding-protein-dependent transporters inner membrane component
           [Paenibacillus sp. JDR-2]
 gi|247545334|gb|ACT02353.1| binding-protein-dependent transport systems inner membrane
           component [Paenibacillus sp. JDR-2]
          Length = 332

 Score = 35.7 bits (80), Expect = 7.8,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 70/224 (31%), Gaps = 19/224 (8%)

Query: 1   MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
           +++ LK+I     ++  +++ V Y       +  S + A  ++ G++   +++      +
Sbjct: 2   LQYTLKRILLAIPVVFFISVIVFYIIQLPPGDYVSNYAAEASVAGEVFTQEDMAAMRADL 61

Query: 61  SRDDS--------ATALIVSLS---SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109
             D             +++      S   +    + I + +  +     ++T   +   +
Sbjct: 62  GLDRPVYEQYFIWVKDIVLHGDFGFSFNYNKPVLDVIKQYM-GLTLTVSLVTMAFQYLVA 120

Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV-------KSSPMKA 162
               I CA     A +    G   +    P+    +  + +S            S+    
Sbjct: 121 IPIGIYCAVKQYSAGDYFFSGLSFLGMATPHFLMAVILMFLSYTWFGDPLLGLFSAEYVN 180

Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206
            P    +    A  M+  V+         L+   R    D+   
Sbjct: 181 APWSMDKAIDLAKHMVIPVIVIGLSGTADLIRVMRGQMLDELNK 224


>gi|320449637|ref|YP_004201733.1| 3-hydroxybutyryl-CoA dehydratase [Thermus scotoductus SA-01]
 gi|320149806|gb|ADW21184.1| 3-hydroxybutyryl-CoA dehydratase [Thermus scotoductus SA-01]
          Length = 273

 Score = 35.7 bits (80), Expect = 7.9,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 6/82 (7%)

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG-VDQSIRKIKDWNP 254
            R        ++  GR  +  EA  +GL++ VG  E+  +    L         I     
Sbjct: 169 GRGR---ALDLIFTGRHVSAEEALSLGLVNRVG--EDALEEAKKLAQKIMKNAPIALALA 223

Query: 255 PKNYWFCDLKNLSISSLLEDTI 276
            ++    +  +L+ +  +E  +
Sbjct: 224 KESVVRGEGLDLAEALEIEADL 245


>gi|291295936|ref|YP_003507334.1| hypothetical protein Mrub_1552 [Meiothermus ruber DSM 1279]
 gi|290470895|gb|ADD28314.1| protein of unknown function DUF114 [Meiothermus ruber DSM 1279]
          Length = 279

 Score = 35.7 bits (80), Expect = 7.9,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 67/183 (36%), Gaps = 21/183 (11%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           I+DS++++  I     D S   + + L +PGG   A E I  A+ K   +  V   V   
Sbjct: 68  IDDSEQVLRAIRM--TDQSVP-IDLILHTPGGLVLAAEQIAEALLKHPAK--VTVFVPHY 122

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
           A S G LI+ A++ IV    +++G +            L       + ++  P+      
Sbjct: 123 AMSGGTLIALAADEIVMDPNAVLGPVDPQLGQYPAASIL-------RVLEQKPIAEIDDQ 175

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220
              +   A + +  V  +      +   E       +   L     WT        EA+ 
Sbjct: 176 TLIMADVARKALFQVKRTVAGLLRKHFDE---QKSQELAELLSQGTWTHDYPISVEEARS 232

Query: 221 VGL 223
           +GL
Sbjct: 233 MGL 235


>gi|326693258|ref|ZP_08230263.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc
           argentinum KCTC 3773]
          Length = 200

 Score = 35.7 bits (80), Expect = 8.0,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 58/193 (30%), Gaps = 31/193 (16%)

Query: 40  RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + ++G+IEDS    ++ ++  +   D    + + ++SPGGS  AG +I   +  +K   
Sbjct: 27  IVLVQGEIEDSMATSIVAQLLFLEAQDPTKEISMYINSPGGSVTAGLSITDTMNFIKAPV 86

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      +       S           +       +          D   ++ +    
Sbjct: 87  TTIVMGLAASMGTIIASSGEKGHRFMLPNAEYLIHQPMGGAAGGTQQTDMAIIAEQL--- 143

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216
                                      +     R+++++     +     ++   W +  
Sbjct: 144 -------------------------TKTRAKLNRILADASGKDLETIAHDTERDYWMSAE 178

Query: 217 EAKKVGLIDVVGG 229
           E  + G ID +  
Sbjct: 179 ETLEYGFIDGILT 191


>gi|253796882|gb|ACT35696.1| capsid protein [Wolbachia phage WO]
          Length = 119

 Score = 35.7 bits (80), Expect = 8.0,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
           +  ++++ +Q  +D  Y  FV+L++ +R +  +K      G  + G  A ++GL D +
Sbjct: 1   MTSESLESLQKEIDRLYEMFVQLIARNRGLSIEKIRSTEAGLYF-GERAIEIGLADGI 57


>gi|99082633|ref|YP_614787.1| carnitinyl-CoA dehydratase [Ruegeria sp. TM1040]
 gi|99038913|gb|ABF65525.1| Enoyl-CoA hydratase/isomerase [Ruegeria sp. TM1040]
          Length = 262

 Score = 35.7 bits (80), Expect = 8.1,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 20/48 (41%)

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
            R   +    +L  GR +   EA + GL++ +   +++    + L   
Sbjct: 149 KRIPYHVAMELLLTGRWFDAEEAHRWGLVNEIVAADQLMDRAWELARL 196


>gi|315230791|ref|YP_004071227.1| membrane-bound ClpP-class protease [Thermococcus barophilus MP]
 gi|315183819|gb|ADT84004.1| membrane-bound ClpP-class protease [Thermococcus barophilus MP]
          Length = 449

 Score = 35.7 bits (80), Expect = 8.1,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 3/112 (2%)

Query: 18  VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSS 75
           V L V  F   +     +  V    I+GQI      +    I    R  +A A+I+ L +
Sbjct: 4   VLLIVALFILLTPALAQAKTVYVAQIKGQITSYTYDQFDRYISEAER-ANANAIIIELDT 62

Query: 76  PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           PGG   A + I + IQ  K    +        A++        + ++A    
Sbjct: 63  PGGRGDAMQNIIQRIQTAKVPVIIYVYPSGAMAASAGTYIALGSHLIAMAPG 114


>gi|240278049|gb|EER41556.1| enoyl-CoA hydratase/isomerase [Ajellomyces capsulatus H143]
 gi|325096114|gb|EGC49424.1| enoyl-CoA hydratase/isomerase [Ajellomyces capsulatus H88]
          Length = 241

 Score = 35.7 bits (80), Expect = 8.3,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 11/184 (5%)

Query: 60  ISRDDSATALIVSLS-SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118
              D     + +  +     S    + I RA++ V+       +  +     G  +  A 
Sbjct: 21  AKGDPQIYLITLRKAPENRISTIFAQEIIRALRDVERMVEAAGKDEQ-----GGSVGAAV 75

Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178
            I           +  L  YP+    L    ++  +   +   A    +  +N +     
Sbjct: 76  IIRGEGNKFWSTLLHTLLDYPFPTIAL----LNGHTFGGACPLALAHDYRVMNSRRGFFS 131

Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
              V+   H+          +  +     L +   WTG EA + G++D +   E++  + 
Sbjct: 132 MPPVNIGVHFPGIGYLARLKLRPEIAREMLLEAHKWTGKEALEDGIVDQIAEPEDMLDAA 191

Query: 238 YALG 241
             + 
Sbjct: 192 IEVA 195


>gi|88763674|gb|ABD49507.1| capsid protein [Wolbachia phage WO]
          Length = 117

 Score = 35.7 bits (80), Expect = 8.3,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236
             FV+L++ +RN   +       G  + G  A +VGL D +    E    
Sbjct: 3   EMFVQLIARNRNFSIEVIKSTEAGLHF-GENAIEVGLADGITTFCEFINK 51


>gi|138895477|ref|YP_001125930.1| enoyl-CoA hydratase [Geobacillus thermodenitrificans NG80-2]
 gi|196249063|ref|ZP_03147762.1| Enoyl-CoA hydratase/isomerase [Geobacillus sp. G11MC16]
 gi|134266990|gb|ABO67185.1| Enoyl-CoA hydratase/isomerase family protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211292|gb|EDY06052.1| Enoyl-CoA hydratase/isomerase [Geobacillus sp. G11MC16]
          Length = 254

 Score = 35.7 bits (80), Expect = 8.4,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 57/182 (31%), Gaps = 8/182 (4%)

Query: 67  TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126
            A++        +A   + +   +  ++  K   T +  +        +      + +  
Sbjct: 12  KAILELNRPQALNAMDMQMLTELVDALRKIKESDTSIVVIRGKGRGFSAGGDIKTMLSVD 71

Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
                  V+     +   L  +     S    P       F+  +   +   +  +  ++
Sbjct: 72  DPSQFRTVMKTIQEMIMLLYTMPKITVSFIHGPAAGLGFSFALASDYLIATNEARLAMNF 131

Query: 187 -------HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE-VWQSLY 238
                        +   R        ++ +G+  +  EAK++GL+D+V   EE   Q L 
Sbjct: 132 IGVGLVPDGGGHFLLAQRVGTPKAKQIIWEGKTMSADEAKQLGLVDLVVDSEEQAEQWLA 191

Query: 239 AL 240
           +L
Sbjct: 192 SL 193


>gi|330837420|ref|YP_004412061.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta
           coccoides DSM 17374]
 gi|329749323|gb|AEC02679.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta
           coccoides DSM 17374]
          Length = 246

 Score = 35.7 bits (80), Expect = 8.5,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 7/165 (4%)

Query: 41  IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
           I + G+I+   +  LI ++  +  +D    + + ++SPGG   AG AI+  I+ V     
Sbjct: 80  ILLSGEIDKECADRLIRQLLVMEAEDGDAPVYLYINSPGGDVDAGYAIYDMIRFVSCPIT 139

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
           +I      +A+A  L+S  ++  V    S       L     V   ++     I+ +++ 
Sbjct: 140 IIGMGLVASAAALILLSVPADRRVGLPDSTYLIHQPLSGMKGVATDIEIHARQIEKLRAK 199

Query: 159 -----PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                      S              D  ++  +  +  +  SR 
Sbjct: 200 LDGVIAAATGKSVEEVAEDTERDHWLDAGEARDYGLISRIVSSRK 244


>gi|303320125|ref|XP_003070062.1| 3,2-trans-enoyl-CoA isomerase, mitochondrial precursor, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240109748|gb|EER27917.1| 3,2-trans-enoyl-CoA isomerase, mitochondrial precursor, putative
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 267

 Score = 35.7 bits (80), Expect = 8.5,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 36/122 (29%), Gaps = 1/122 (0%)

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221
            +    +                       +V +    P     +++ GR +   EA   
Sbjct: 123 HDYRFQNPTRGYLCLNEVHFGAWLPAPMASIVKQKVANPAAVRDLITAGRRFDAKEALSA 182

Query: 222 GLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
           G+ID  GG E   + +    + +    K+      + Y        S     ++ +  ++
Sbjct: 183 GIIDATGGIEVALKFIEDRSLVKLGQTKVYASLKEEIYKETLKTLESYEENEKERLGRLQ 242

Query: 281 QT 282
           + 
Sbjct: 243 ER 244


>gi|218961379|ref|YP_001741154.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Candidatus Cloacamonas acidaminovorans]
 gi|167730036|emb|CAO80948.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Candidatus Cloacamonas acidaminovorans]
          Length = 194

 Score = 35.7 bits (80), Expect = 8.5,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            + + G IED  +  ++ ++  +  +D    + + ++SPGG   AG AI+  +Q +K R 
Sbjct: 29  IVFVGGVIEDNLANTVVAQLLHLEGEDPERDIYMYINSPGGIISAGLAIYDTMQYIKPRV 88

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L + A     A   S +     +         ++           
Sbjct: 89  STICIGQAASMAAVLLAAGAPGKRSALPNSRIMIHQPMGGAQGQATDIE----------- 137

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216
                              +    +         ++ +      +K           +  
Sbjct: 138 -------------------IQAKEILYLRGRMNEILHKHSGQSIEKIMEDTERNYFMSAE 178

Query: 217 EAKKVGLIDVV 227
           EA + G+ID V
Sbjct: 179 EAMEYGIIDEV 189


>gi|160946055|ref|ZP_02093275.1| hypothetical protein PEPMIC_00010 [Parvimonas micra ATCC 33270]
 gi|158447859|gb|EDP24854.1| hypothetical protein PEPMIC_00010 [Parvimonas micra ATCC 33270]
          Length = 170

 Score = 35.7 bits (80), Expect = 8.5,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 21/79 (26%), Gaps = 1/79 (1%)

Query: 160 MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEA 218
                  +   +    Q       +       L      +  +    L D   W +  EA
Sbjct: 51  HNPWSFAYGNASDFRKQADNLDHIADSIKQTYLEKAGDKLDLETITQLMDAETWMSAQEA 110

Query: 219 KKVGLIDVVGGQEEVWQSL 237
            + GL D V    +   S+
Sbjct: 111 FEYGLCDQVLSANQAAASI 129


>gi|83950950|ref|ZP_00959683.1| hypothetical protein ISM_07610 [Roseovarius nubinhibens ISM]
 gi|83838849|gb|EAP78145.1| hypothetical protein ISM_07610 [Roseovarius nubinhibens ISM]
          Length = 798

 Score = 35.7 bits (80), Expect = 8.7,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 1/76 (1%)

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269
           G+     EA +  L D  G  ++           ++   I+ ++  +++        S  
Sbjct: 328 GKRLEALEALQKQL-DEAGTLKDALAEAVTNAGVKTKTIIETYSDLEDFSSLIETAKSAR 386

Query: 270 SLLEDTIPLMKQTKVQ 285
             L D +  +K     
Sbjct: 387 LNLRDYLKALKSAFED 402


>gi|269793010|ref|YP_003317914.1| hypothetical protein Taci_1401 [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100645|gb|ACZ19632.1| protein of unknown function DUF114 [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 277

 Score = 35.7 bits (80), Expect = 8.9,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 54/183 (29%), Gaps = 20/183 (10%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           IEDS+E++  I           +I    +PGG   A E I  A++K    K  +   H  
Sbjct: 65  IEDSEEVLRFIRMTPDHVPIDMVI---HTPGGLLLAAEQIAEALRKHP-SKVTVFVPHYA 120

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            +    +   A  I++     L      L Q+P            ++ V    +      
Sbjct: 121 MSGGTLIALAADEIVMDRHAVLGPVDPQLGQWPAASIIKAVEQKPVEEVDDHTLIMADVA 180

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220
              +      + + +  +                 D          WT        EA+ 
Sbjct: 181 RKAMRQTEDFVRRLLKSNGMEE----------ERADALAKALTDGRWTHDYPINIDEARS 230

Query: 221 VGL 223
           +GL
Sbjct: 231 LGL 233


>gi|254512845|ref|ZP_05124911.1| carnitinyl-CoA dehydratase (Crotonobetainyl-CoAhydratase)
           [Rhodobacteraceae bacterium KLH11]
 gi|221532844|gb|EEE35839.1| carnitinyl-CoA dehydratase (Crotonobetainyl-CoAhydratase)
           [Rhodobacteraceae bacterium KLH11]
          Length = 259

 Score = 35.7 bits (80), Expect = 8.9,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%)

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
            R   +    +L  GR +   EA + GL++ +   +++      L   
Sbjct: 146 KRIPYHIAMELLLTGRWFDAEEANRWGLVNEIIAADQLMDRARELARL 193


>gi|313900686|ref|ZP_07834179.1| endopeptidase Clp [Clostridium sp. HGF2]
 gi|312954748|gb|EFR36423.1| endopeptidase Clp [Clostridium sp. HGF2]
          Length = 189

 Score = 35.4 bits (79), Expect = 9.0,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 32/190 (16%)

Query: 40  RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97
            I + G+I+D  S  +  ++  +S   S   + + ++SPGGS  AG AI+  ++ ++   
Sbjct: 29  IIILTGEIDDAMSSSICAQLLYLSSISS-EPIQMYINSPGGSVSAGLAIYDIMKYIRCDV 87

Query: 98  PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157
             I      + +A  L +       A   S +     +         +      ++    
Sbjct: 88  STICMGICASMAAVLLSAGTQGKRSALSNSEIMIHQPMG-------GMQGQAKDMEIAAL 140

Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217
              K +   +S ++    Q  + +       +                           E
Sbjct: 141 HIQKLKERLYSILSENTRQSNETLRRDCDRDYYMD----------------------AKE 178

Query: 218 AKKVGLIDVV 227
           A   GLID +
Sbjct: 179 ALSYGLIDAI 188


>gi|220925287|ref|YP_002500589.1| NAD-binding 3-hydroxyacyl-CoA dehydrogenase [Methylobacterium
           nodulans ORS 2060]
 gi|219949894|gb|ACL60286.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Methylobacterium
           nodulans ORS 2060]
          Length = 692

 Score = 35.4 bits (79), Expect = 9.1,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 6/92 (6%)

Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS--LYALGVDQSIRKIKDWNPPKN 257
           P     V+  G      +A  +GL+D +  ++ +      +A  V    R +      ++
Sbjct: 149 PRKALEVIVGGAPIGAKQAAAMGLVDEIAPEDSLRAHAVAFAERVVAEGRPLTRIRDRED 208

Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
                  +      L D        +++G  A
Sbjct: 209 RLAEGRDDPG----LFDAFRRENARRLRGFEA 236


>gi|319892557|ref|YP_004149432.1| Prophage Clp protease-like protein [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162253|gb|ADV05796.1| Prophage Clp protease-like protein [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 240

 Score = 35.4 bits (79), Expect = 9.1,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 68/230 (29%), Gaps = 54/230 (23%)

Query: 41  IAIRGQIEDSQE----------------LIERIERISRDDSATALIVSLSSPGGSAYAGE 84
           I I+G I  + +                +I+ + +   D     + V ++S GG  ++G 
Sbjct: 3   INIKGAIVSNDDKWLYEIFGMEHTAPKDVIDALPKNKED-----IEVIINSGGGDVFSGS 57

Query: 85  AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144
            I+ A+++ + +                        +     S    + +   +  + P 
Sbjct: 58  EIYTALKEYQGKV--------------------IVKVYGVAASAASVVAMAGDHIEMSPT 97

Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204
              +  +  ++     +   S    ++     +    V            +   +  ++ 
Sbjct: 98  AQMMIHNASTLAYGDNRNMNSASKMLSSTDKGIANAYV------------KKTGMSEEEI 145

Query: 205 LVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253
           L L +   W    EA + G  D     +   + + + G   S    K   
Sbjct: 146 LNLMNDETWMNAQEAVEKGFADAKMFDDAAPKIVASFGQVISEDAKKRIT 195


>gi|88763678|gb|ABD49509.1| capsid protein [Wolbachia phage WO]
          Length = 121

 Score = 35.4 bits (79), Expect = 9.1,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
           Y  FV+L++ +R +  +K      G  + G +A ++GL D V    E
Sbjct: 5   YEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFE 50


>gi|212639180|ref|YP_002315700.1| enoyl-CoA hydratase [Anoxybacillus flavithermus WK1]
 gi|212560660|gb|ACJ33715.1| Enoyl-CoA hydratase/carnithine racemase [Anoxybacillus flavithermus
           WK1]
          Length = 268

 Score = 35.4 bits (79), Expect = 9.4,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 20/33 (60%)

Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239
           + +G++ +  EA +VGL+D +G ++ +   +  
Sbjct: 174 IWEGKVMSAQEAYEVGLVDEIGDEQAIQHKVNE 206


>gi|194746259|ref|XP_001955598.1| GF16168 [Drosophila ananassae]
 gi|190628635|gb|EDV44159.1| GF16168 [Drosophila ananassae]
          Length = 563

 Score = 35.4 bits (79), Expect = 9.4,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 47/162 (29%), Gaps = 11/162 (6%)

Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
                    +      +     K   +   E+            +            + +
Sbjct: 49  HQNNHAYQFMDTGTSILSVFRGKGAWTAREEIRLLDAIEQYGFGNWEDISKHIETKSAED 108

Query: 199 IPYDKTLVLSDGRI----WTGAEAKKVGLIDVVGGQE------EVWQSLYALGVDQSIRK 248
              +      +G I    WT A++++  LID  G  +          SL  L ++     
Sbjct: 109 AKEEYVNKFVNGTIGKATWTPAQSQRPRLIDHTGDDDAGPLGTSALASLPPLDINTDEAM 168

Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290
              + P ++ +  +  + +   L+ +     + T+V  +  +
Sbjct: 169 QLGYMPNRDSFEREY-DPTAEQLISNITLSSEDTEVDVMLKL 209


>gi|315221880|ref|ZP_07863792.1| Clp protease [Streptococcus anginosus F0211]
 gi|315189113|gb|EFU22816.1| Clp protease [Streptococcus anginosus F0211]
          Length = 227

 Score = 35.4 bits (79), Expect = 9.6,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 11/181 (6%)

Query: 41  IAIRGQIEDSQELIE---------RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
           I I+G I     + E          +E I     +  L V ++S GG  Y    I+  ++
Sbjct: 4   IEIKGVIIPKSSIPEYKKDGREYTSLEDIKIPFPSEPLEVRINSSGGDVYTANEIYAKLR 63

Query: 92  KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
             K +  V      +AASA  +I+ A ++I     +L+    V          L +   +
Sbjct: 64  GHKGKVTVKIVG--LAASAASVIAMAGDVIEMNPIALMMIHNVSTLTYGNSQQLKRQIET 121

Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
           +     +   A          K  +MM+     S    + L    + +           R
Sbjct: 122 MDVANDALATAYQERTGLAKEKIKEMMERETWLSCDTAISLGFADKKMFVKDIDTTMVKR 181

Query: 212 I 212
           I
Sbjct: 182 I 182


>gi|313679166|ref|YP_004056905.1| hypothetical protein Ocepr_0270 [Oceanithermus profundus DSM 14977]
 gi|313151881|gb|ADR35732.1| hypothetical protein Ocepr_0270 [Oceanithermus profundus DSM 14977]
          Length = 281

 Score = 35.4 bits (79), Expect = 9.6,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 61/183 (33%), Gaps = 21/183 (11%)

Query: 47  IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
           I+DS++++  I     D     + + L +PGG   A E I  A+++    K  +   H  
Sbjct: 71  IDDSEQVLRAIRM--TDKHVP-IDLILHTPGGLVLAAEQIAEALKRHPA-KVTVFVPHYA 126

Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
            +    +   A  I++     L      L   P            +K ++   +      
Sbjct: 127 MSGGTLIALGADEIVMDENAVLGPVDPQLGNKPAASI--------VKVLEMKEIADIDDE 178

Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA------EAKK 220
              +   + + ++ V ++        + + R    +    L     WT        +A+ 
Sbjct: 179 TLILADVSKKALKQVKETVMGLLKNTIPDDR---VEDVASLLSQGTWTHDYPIDVAQARG 235

Query: 221 VGL 223
            GL
Sbjct: 236 FGL 238


>gi|88763690|gb|ABD49514.1| capsid protein [Wolbachia phage WO]
          Length = 122

 Score = 35.4 bits (79), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245
           Y  F++L++ +R +  +K      G  + G +A ++G+ D V    E   +  +  V  +
Sbjct: 10  YEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGVADGVTTFFEFINNHKSRSVSMT 68

Query: 246 IRKIKDWNPPK 256
             ++ +     
Sbjct: 69  TNELTEEGYEN 79


>gi|229119089|ref|ZP_04248427.1| Integrase [Bacillus cereus Rock1-3]
 gi|228664373|gb|EEL19876.1| Integrase [Bacillus cereus Rock1-3]
          Length = 173

 Score = 35.4 bits (79), Expect = 9.7,   Method: Composition-based stats.
 Identities = 10/113 (8%), Positives = 33/113 (29%), Gaps = 2/113 (1%)

Query: 53  LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112
           +++ +++  +  +   +++  +   G  Y      + ++K + +  +  + +    +   
Sbjct: 61  VLDTLKKARKKQNVKGILLHSN--QGFQYTSRQYNQLLKKYQMKASMSRKGNCWDNACIE 118

Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
                         S   +  V         F +      K    SP K    
Sbjct: 119 NFFSHFKSECFHLYSFRKADEVKVAVRKYMHFYNYQRFQKKLNNLSPYKYRTQ 171


>gi|119183949|ref|XP_001242949.1| hypothetical protein CIMG_06845 [Coccidioides immitis RS]
 gi|320031897|gb|EFW13854.1| enoyl-CoA hydratase/isomerase [Coccidioides posadasii str.
           Silveira]
          Length = 267

 Score = 35.4 bits (79), Expect = 9.8,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 36/122 (29%), Gaps = 1/122 (0%)

Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221
            +    +                       +V +    P     +++ GR +   EA   
Sbjct: 123 HDYRFQNPTRGYLCLNEVHFGAWLPAPMASIVKQKVANPAAVRDLITAGRRFDAKEALSA 182

Query: 222 GLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280
           G+ID  GG E   + +    + +    K+      + Y        S     ++ +  ++
Sbjct: 183 GIIDATGGIEVALKFIEDRSLVKLGQTKVYASLKEEIYKETLKTLESHEENEKERLGRLQ 242

Query: 281 QT 282
           + 
Sbjct: 243 ER 244


>gi|254465576|ref|ZP_05078987.1| carnitinyl-CoA dehydratase [Rhodobacterales bacterium Y4I]
 gi|206686484|gb|EDZ46966.1| carnitinyl-CoA dehydratase [Rhodobacterales bacterium Y4I]
          Length = 265

 Score = 35.4 bits (79), Expect = 9.8,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 20/48 (41%)

Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243
            R   +    +L  GR +   EA + GL++ +   +++    + L   
Sbjct: 152 KRIPYHIAMELLLTGRWFDAEEANRWGLVNEIVAADQLMDRAWELARL 199


>gi|38146281|gb|AAR11503.1| capsid protein [Wolbachia phage WO]
          Length = 117

 Score = 35.4 bits (79), Expect = 9.9,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
                  V+  Y  F++L++ +R +  +K      G  + G  A ++GL D +
Sbjct: 1   DWKAYKEVERLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GERAIEIGLADGI 52


>gi|146278618|ref|YP_001168777.1| peptidase S49 [Rhodobacter sphaeroides ATCC 17025]
 gi|145556859|gb|ABP71472.1| peptidase S49 [Rhodobacter sphaeroides ATCC 17025]
          Length = 327

 Score = 35.4 bits (79), Expect = 9.9,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 76/215 (35%), Gaps = 15/215 (6%)

Query: 39  ARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPGGSAYAGEA 85
           A + +RG +  +               L E +  ++  + A A+++ + SPGG     EA
Sbjct: 61  AVVPVRGILTPNMAQYERWFGWATYHGLAETLTHLAASEDAAAIVLEIDSPGGLVCGIEA 120

Query: 86  IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
              AI      KPV   V  +AASA Y ++  ++ IV    ++ GSIGV           
Sbjct: 121 AAEAIAAAAAVKPVHALVSPLAASAAYWLASQASEIVMTPGAVAGSIGVALTAAAHVQPG 180

Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205
                  +          P   ++     +Q   D  ++++H        +R    D   
Sbjct: 181 ANGAQIFEMSSRHARAKRPDASTKAGRAELQRSLDEAEAAFHAIPAAELAARLSVTDDPQ 240

Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
                  +  AE  + GL D    +   +  L A 
Sbjct: 241 D--GAATFRAAEVIRRGLADRTETRAAFYARLTAR 273


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.310    0.107    0.254 

Lambda     K      H
   0.267   0.0332    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,237,644,604
Number of Sequences: 14124377
Number of extensions: 32106907
Number of successful extensions: 292810
Number of sequences better than 10.0: 5019
Number of HSP's better than 10.0 without gapping: 3155
Number of HSP's successfully gapped in prelim test: 1864
Number of HSP's that attempted gapping in prelim test: 283289
Number of HSP's gapped (non-prelim): 6851
length of query: 293
length of database: 4,842,793,630
effective HSP length: 138
effective length of query: 155
effective length of database: 2,893,629,604
effective search space: 448512588620
effective search space used: 448512588620
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 80 (35.7 bits)