BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780747|ref|YP_003065160.1| putative protease IV transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] (293 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254780747|ref|YP_003065160.1| putative protease IV transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040424|gb|ACT57220.1| putative protease IV transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] Length = 293 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 293/293 (100%), Positives = 293/293 (100%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI Sbjct: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI Sbjct: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD Sbjct: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL Sbjct: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP Sbjct: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 >gi|315121910|ref|YP_004062399.1| putative protease IV transmembrane protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495312|gb|ADR51911.1| putative protease IV transmembrane protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 295 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 157/290 (54%), Positives = 219/290 (75%), Gaps = 2/290 (0%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-QELIERIERISRDD 64 K IK R+++ L+ L + YF+W S D +PHVARI I G I D ++L++RI R+ DD Sbjct: 6 KNIKKRHIVYLLIALGITYFAWDSIFPDRTPHVARITISGSIGDDNEDLLDRIHRVGTDD 65 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 SA AL++ +SSPGG+ Y E++F A++KVK RKPV+T V +AAS GYLISCASN I+A+ Sbjct: 66 SAKALVLWISSPGGTVYGSESLFEAVKKVKLRKPVVTLVGGVAASGGYLISCASNAIIAS 125 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 ++S++GSIGV YP KPFLDKLG+S++++KSSP+K EPSP+S+ NP+ +Q ++++V+ Sbjct: 126 QSSIIGSIGVFLSYPQFKPFLDKLGISVETIKSSPLKGEPSPYSKPNPQTIQNLKELVND 185 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 YHWFV+LVSE R+IPYDK L LS G +W+G +AKK+GLID +GG +EVW+SLY+LGVD+ Sbjct: 186 EYHWFVKLVSEERHIPYDKALTLSSGLVWSGTKAKKLGLIDAIGGNDEVWKSLYSLGVDK 245 Query: 245 SIRKIKDWNPPKNYWFCDLKNLS-ISSLLEDTIPLMKQTKVQGLWAVWNP 293 ++ IKDW PKNYWF D + S LED++P ++Q +GL AVW P Sbjct: 246 DVKIIKDWKSPKNYWFFDFNFKKYVKSTLEDSVPFIRQANFEGLLAVWRP 295 >gi|206889350|ref|YP_002249562.1| signal peptide peptidase SppA, 36K type [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741288|gb|ACI20345.1| signal peptide peptidase SppA, 36K type [Thermodesulfovibrio yellowstonii DSM 11347] Length = 285 Score = 177 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 81/288 (28%), Positives = 153/288 (53%), Gaps = 10/288 (3%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDS 65 KK+K ++++ + L + + VA + I+G I DS+ I+ I++ +D S Sbjct: 4 KKLKFFFIIIGTLILISFLITIMES-SLTAGKVAIVNIKGIIVDSKPSIDEIKQYRKDPS 62 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 A+++ + SPGG+ + I+ I++ KPV+ + +AAS GY ISC + I+A Sbjct: 63 IKAIVLRVDSPGGAVVPSQEIYEEIKRTIKSKPVVVSMGSIAASGGYYISCPATKIIANP 122 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 +L GSIGVL + P +K LDK+GV + +KS K SPF + + +++Q + + Sbjct: 123 GTLTGSIGVLIEIPNIKGLLDKIGVKAEVIKSGKYKDITSPFKPLQNEEKEILQKLTNDV 182 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 + F++ V+E R +P + ++DGR++TG +AK++GL+D +G + + L + Sbjct: 183 HEQFIKAVAEGRKVPVEDIKKIADGRVFTGLKAKELGLVDEIGDLDYAIKIAAQLAKIKG 242 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 +I K+ D + SL++ +P M+ ++ +++P Sbjct: 243 EPEIVT---KKSTLLIDFLKGNTESLVKKILPYMQ------VYYLYSP 281 >gi|153005152|ref|YP_001379477.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter sp. Fw109-5] gi|152028725|gb|ABS26493.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter sp. Fw109-5] Length = 366 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 65/262 (24%), Positives = 126/262 (48%), Gaps = 6/262 (2%) Query: 11 RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI------EDSQELIERIERISRDD 64 V + L P VA I ++G I D+ +++++ ++++DD Sbjct: 75 FLVFFGFLVLAYSVVKGEGPAIATGPRVAIIEVKGPIGTGAGGADADRILKQLRKVAQDD 134 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 A++V + SPGG+ + + ++K+ +K V+ + +AAS G+ ++ A +VA Sbjct: 135 GLKAVVVRIDSPGGAVAPSQELHDEVKKLAQKKTVVCSMGNLAASGGFYVAVACPKVVAE 194 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 +L GSIGV+ Q+P VK L++ V +++VKS +K +PF++++ + Q ++D Sbjct: 195 PGTLTGSIGVITQFPKVKGLLERWDVKMETVKSGALKDAGNPFADMSAEERAYWQSLIDR 254 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 Y FVR V++ R + +DGR+ TG EAK++ L+D +G + + Sbjct: 255 VYGQFVRAVAQGRGLEEAAVRKFADGRVITGEEAKELKLVDALGNFYDAVELAKQEAKLS 314 Query: 245 SIRKIKDWNPPKNYWFCDLKNL 266 + + + L Sbjct: 315 GEPHLVYPADERGRFLEQLMGS 336 >gi|300023831|ref|YP_003756442.1| signal peptide peptidase SppA, 36K type [Hyphomicrobium denitrificans ATCC 51888] gi|299525652|gb|ADJ24121.1| signal peptide peptidase SppA, 36K type [Hyphomicrobium denitrificans ATCC 51888] Length = 321 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 85/299 (28%), Positives = 147/299 (49%), Gaps = 13/299 (4%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVE-DNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66 + + L+ + + +ARI I G I + ++ ++ ++ I+ D S Sbjct: 20 WRAAGLAAVLIAIGALTLGGDKLATLAGEKQIARITIEGTISEDRDQLKMLKDIAEDSSV 79 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 +++ ++SPGG+ GEA++ ++ + +KP++ + +AASA Y+ A++ IVA Sbjct: 80 AGVLMYVNSPGGTTTGGEALYEGLRALAAKKPIVAQFGTVAASAAYIAGIATDHIVARGN 139 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 S+ GS+GV+ Q+P LDK+GV + VKS +KA PSPF + Q+ Q +V+ + Sbjct: 140 SITGSVGVIVQWPEFVQLLDKVGVKVNEVKSGVLKASPSPFEPLTEGGKQVAQGMVNDGF 199 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 WFV LV R + L DGR+++G EA + L+D +GG+EE + L Sbjct: 200 KWFVGLVETRRGVKAADIPGLLDGRVFSGREALQAKLVDQIGGEEEAVKWLKDEKNVPQS 259 Query: 247 RKIKDWNP--PKNYWFCDLKNLSISSLLEDTIP----------LMKQTKVQGLWAVWNP 293 K+ DW P P +Y F + LL + + GL ++W+P Sbjct: 260 AKLVDWKPSTPNSYGFAGMSGQIAGFLLGSSAGDLVNFLSRERSFSTLGLDGLLSLWHP 318 >gi|114328685|ref|YP_745842.1| signal peptide peptidase sppA [Granulibacter bethesdensis CGDNIH1] gi|114316859|gb|ABI62919.1| signal peptide peptidase sppA [Granulibacter bethesdensis CGDNIH1] Length = 347 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 88/268 (32%), Positives = 148/268 (55%), Gaps = 6/268 (2%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 SH + PH+ RI I G I + L+E I + D S A+++ ++SPGG+ GEA+ Sbjct: 81 SHAVVSGPHLTRIRISGIITYDRPLLEAISHAADDSSVKAVLLEINSPGGTVAGGEALHD 140 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 A+ ++ RKP++T + +AASAGY+I+ S I A + +L GSIGVL Q + L KL Sbjct: 141 ALAQLAARKPLVTTMESVAASAGYMIAAPSARIFARQATLTGSIGVLMQSAELSGLLGKL 200 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 GV ++ S PMK +PS + ++P+ QM+Q +V+ Y FV +V++ R++ + L+ Sbjct: 201 GVGSNTIVSGPMKDQPSLTAPLSPEGRQMLQGIVNDMYDQFVTMVAQGRHMTPEHVRALA 260 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP---KNYWFCDLKN 265 DGR +TG +A +GL+D +GG+ + L ++ + + +WF Sbjct: 261 DGRPYTGRQALALGLVDQIGGEHDARVWLAKERHVPEDLPVRPLHESDGLRKHWFGGWLG 320 Query: 266 LSISSLLEDTIPLMKQTKVQGLWAVWNP 293 S+ + +E + + + G WA+W P Sbjct: 321 -SLENFVESKLS--QGVSIDGAWALWQP 345 >gi|225849223|ref|YP_002729387.1| signal peptide peptidase SppA, 36K type [Sulfurihydrogenibium azorense Az-Fu1] gi|225643770|gb|ACN98820.1| signal peptide peptidase SppA, 36K type [Sulfurihydrogenibium azorense Az-Fu1] Length = 276 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 82/253 (32%), Positives = 141/253 (55%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVS 72 V++ LV + +V++ SS E + P VA I + I D E + I + +D+S A++++ Sbjct: 5 VLIGLVAIFIVFYIISSLKETSKPKVALIRVNDTIMDHMETVSNIAQAEKDESIKAVVIA 64 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 + SPGG+ A + I+RAI+K++ +KPV+ + +AAS GY IS +N+I A ++ GSI Sbjct: 65 VDSPGGAVGASQEIYRAIEKLREKKPVVVSMGNVAASGGYYISAPANVIYANPGTITGSI 124 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GV+ Q + L+K+GV + +VKS K P + P+ Q+++ V Y F+ Sbjct: 125 GVIIQQVDLSEVLNKIGVKVNTVKSGENKDILYPTKPLTPEQKQILEKTVMDVYDQFLDA 184 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 + + R I + +DGR+++G EA+K+GLID +G ++ + LG + + Sbjct: 185 IVKYRPIKKEVLKTYADGRVFSGREAQKIGLIDKLGNIQDAVKEAKKLGKLPEDAPVIEI 244 Query: 253 NPPKNYWFCDLKN 265 PPK LK+ Sbjct: 245 KPPKPLLEELLKS 257 >gi|15887687|ref|NP_353368.1| proteinase IV [Agrobacterium tumefaciens str. C58] gi|15155244|gb|AAK86153.1| proteinase IV [Agrobacterium tumefaciens str. C58] Length = 317 Score = 169 bits (426), Expect = 7e-40, Method: Composition-based stats. Identities = 119/292 (40%), Positives = 180/292 (61%), Gaps = 9/292 (3%) Query: 10 TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATAL 69 ++L + + F W + PH+ARI + G I D+ EL+ER+++I++ D+ L Sbjct: 22 AAVLLLVVGAFGLYRFFWQGPQQSAKPHIARIEVSGLITDNTELLERLDKIAKSDNVKGL 81 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 IVS+SSPGG+ Y GE IF+ I+ V +KPV+++V +AASAGY+I+ A ++IVA ETS+ Sbjct: 82 IVSISSPGGTTYGGERIFKVIRSVAEKKPVVSDVRTLAASAGYMIASAGDVIVAGETSIT 141 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+FQYP + ++KLGVS++ +KSSPMKAEPSPF E +A M++ +V SY WF Sbjct: 142 GSIGVIFQYPQLGQLMEKLGVSLQEIKSSPMKAEPSPFHEAPEEAKTMIRAMVMDSYGWF 201 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V LV++ R +P ++ L L+DG I+TG +A L+D +GG++EV GV + + + Sbjct: 202 VDLVADRRKLPREEVLKLADGSIFTGRQALANKLVDTLGGEKEVRAYFETRGVAKDLPIV 261 Query: 250 KDWNPPKNYWFCDLKNLSISSLL--EDTIPL-------MKQTKVQGLWAVWN 292 + P N F I+ LL +D IP + + GL +VW Sbjct: 262 EWRAPSSNSPFALFSVAQIAKLLGYDDLIPFAGPSQLGADKLFLDGLVSVWQ 313 >gi|20807332|ref|NP_622503.1| periplasmic serine protease (ClpP class) [Thermoanaerobacter tengcongensis MB4] gi|20515846|gb|AAM24107.1| Periplasmic serine proteases (ClpP class) [Thermoanaerobacter tengcongensis MB4] Length = 305 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 87/294 (29%), Positives = 148/294 (50%), Gaps = 13/294 (4%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL----------IERI 57 I + L +L + S S +S + + I G I D + +E+I Sbjct: 11 ILALVFAIVLASLFLTQPSTESQKTVSSNTIGVVTIEGVIGDFSNILGIPQFTPDPVEQI 70 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISC 116 R D++ A++V ++SPGGSA I+ ++++K K VI + + AAS GY+ +C Sbjct: 71 RRAQEDNTVKAIVVKINSPGGSAAKSVEIYTELKRLKETGKKVIVSMGDAAASGGYMAAC 130 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 +IIVA ++ GSIGV+ QY + DKLG+ ++KS P K SP ++ P+ + Sbjct: 131 GGDIIVANPATITGSIGVIMQYTNYEGLYDKLGLKEITIKSGPYKDMGSPTRDLTPEEKK 190 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 ++Q ++D +Y FV +VSE R +P +K L+DGRI+TG +A KVGL+D +G + Sbjct: 191 ILQGIIDDTYEQFVEIVSEGRKMPIEKVKELADGRIFTGRQALKVGLVDKLGDFYDAVDI 250 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 Q +K + P N + S+L + +++ + W++ Sbjct: 251 AAKEAGIQGKPVLKYYTTP-NPLSILFGGGAKSNLEGTGLEILRLLFIDK-WSL 302 >gi|153007511|ref|YP_001368726.1| signal peptide peptidase SppA [Ochrobactrum anthropi ATCC 49188] gi|151559399|gb|ABS12897.1| signal peptide peptidase SppA, 36K type [Ochrobactrum anthropi ATCC 49188] Length = 323 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 106/296 (35%), Positives = 187/296 (63%), Gaps = 12/296 (4%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSAT 67 + +++L + V N PH+A++ I G I +++EL++R+++I++DD+ Sbjct: 21 WRGAFLLLIAALIAVFASWSMRGTNFNQPHIAKVRIEGTIFENEELLKRLDKIAKDDAVK 80 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +I+ L SPGG+ GEAIF A++K+ +KPV+T+V +AASAGY+I+ AS+ IVA +TS Sbjct: 81 GVILVLDSPGGTTVGGEAIFEAVRKIAEKKPVVTQVGTLAASAGYMIASASDHIVARQTS 140 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 +VGSIGVLFQYP V LD +GV ++++KSSP+KAEP+ FS + +A M+++++ SY Sbjct: 141 IVGSIGVLFQYPDVSKLLDTIGVKVETIKSSPLKAEPNYFSPASEEAKGMIRNMIMDSYA 200 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 WFV +V + R+ +++ L L++G ++TG +A LID +GG+EE L + G+ + + Sbjct: 201 WFVDIVEKRRSFTHEQALALANGAVFTGRQALDKKLIDGLGGEEEAVAWLASKGLSKDLP 260 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292 ++ +W P + L++L I + ++ ++ ++ + GL +VW+ Sbjct: 261 RL-EWKPVSSETGFSLRDLIIHAGARLLRVPQEADGMLKQIAKERIFLDGLLSVWH 315 >gi|222055988|ref|YP_002538350.1| signal peptide peptidase SppA, 36K type [Geobacter sp. FRC-32] gi|221565277|gb|ACM21249.1| signal peptide peptidase SppA, 36K type [Geobacter sp. FRC-32] Length = 298 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 67/273 (24%), Positives = 143/273 (52%), Gaps = 10/273 (3%) Query: 9 KTRYVMLSLVTLTVVYFSWS----------SHVEDNSPHVARIAIRGQIEDSQELIERIE 58 K ++L +V +TV++ ++ + + V + ++G I D QE +++++ Sbjct: 4 KWLIIVLIVVAVTVLFSVFTISVMKSVFSDTEEAIHGEGVGLVEVKGIILDPQETVKQLQ 63 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 + +++ A+++ + SPGG + I A++K+ +K V+ + +AAS GY I+ + Sbjct: 64 ALRKNEKVKAVVLRIDSPGGVVGPSQEIHDAVKKLNMKKKVVVSMGSLAASGGYYIAVPA 123 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 I A ++ GSIGVL ++ ++ +DK+G+ ++K+ K SP + + +M+ Sbjct: 124 TKIFANPGTITGSIGVLMKFSNIEGLMDKVGMKAFTLKTGKFKDVGSPARTMTDQEKEML 183 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 Q V+DS++ F++ V+E R +P ++ L++GRI++G +A + LID +G ++ + Sbjct: 184 QSVIDSTHGQFIKAVAEGRKLPVEEVRSLANGRIYSGEQALALKLIDQLGTLQDAVEEAG 243 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 LG + +I K + L + + Sbjct: 244 RLGGIKGEPEIIRPPKKKKVFIDLLVESAAERI 276 >gi|86157946|ref|YP_464731.1| signal peptide peptidase A [Anaeromyxobacter dehalogenans 2CP-C] gi|85774457|gb|ABC81294.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Anaeromyxobacter dehalogenans 2CP-C] Length = 316 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 70/259 (27%), Positives = 129/259 (49%), Gaps = 6/259 (2%) Query: 34 NSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + P V I ++G I +++++RI R + D A+++ + SPGGS A + I Sbjct: 48 SGPRVGVIDVKGTIGGGPERDETEDILKRIRRFADDGDLKAVVIRVDSPGGSVGASQEIH 107 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 ++++ +K V+ + +AAS G +S A IVA +L GSIGV+ Q+P VK +K Sbjct: 108 DEVKRLAQKKVVVCSMGNLAASGGLYVSVACPKIVANPGTLTGSIGVISQFPNVKDLAEK 167 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 LGV +++VK+ +K +PF ++ P+ Q +V+++ FV+ V+E R + K + Sbjct: 168 LGVKVETVKTGKLKDAGNPFRDMTPEDRAYWQGLVENTLGQFVKAVAEGRKLDEAKVRAI 227 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 +DGR+ TGA+AK+ GL+D +G + + + + L + Sbjct: 228 ADGRVLTGAQAKEAGLVDQLGNFYDAVELAKQEAKLSGEPVLVYPPDEHGRFLEQLMGGA 287 Query: 268 ISSLLEDTIPLMKQTKVQG 286 ++ + + Q Sbjct: 288 AGAVADAVATRVAQGAADA 306 >gi|110635996|ref|YP_676204.1| signal peptide peptidase A [Mesorhizobium sp. BNC1] gi|110286980|gb|ABG65039.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49 [Chelativorans sp. BNC1] Length = 322 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 98/276 (35%), Positives = 165/276 (59%), Gaps = 13/276 (4%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 PH+A++ I G I + ++L++ +E + + +IV++ SPGG+ GEAI+ Sbjct: 42 GDTLAAGPHIAQVRIEGTILEDKDLLDVLEDVRESSAVQGVIVTVDSPGGTTAGGEAIYE 101 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 AI+++ KPV+ +V +AASAGY+++ A++ IVA +TS+VGSIGV+ QYP V L KL Sbjct: 102 AIRQLAEAKPVVAQVGTLAASAGYMVASAADHIVARQTSIVGSIGVIIQYPDVTDLLSKL 161 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 GV ++ VKSSP+KAEPSPF+ + QM+ +++ SY+WFV L+S+ R +P ++ + L+ Sbjct: 162 GVKVEEVKSSPLKAEPSPFNPTTDQERQMLAGMINDSYNWFVDLISQRRKLPRNEVVALA 221 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY---------- 258 DG I+TG +A + L+D +GG++E L + + +W P + Sbjct: 222 DGSIFTGRQALERKLVDALGGEDEAQAWLVDQ-GLSAELNVVEWKPRSSSGSIFLPTSVA 280 Query: 259 -WFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 W + L +++L D + M+ + GL ++W P Sbjct: 281 AWLANALGLPQATMLLDRLG-MEHIFLDGLLSLWQP 315 >gi|169832316|ref|YP_001718298.1| signal peptide peptidase SppA, 36K type [Candidatus Desulforudis audaxviator MP104C] gi|169639160|gb|ACA60666.1| signal peptide peptidase SppA, 36K type [Candidatus Desulforudis audaxviator MP104C] Length = 299 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 79/281 (28%), Positives = 140/281 (49%), Gaps = 15/281 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVE-DNSPHVARIAIRGQIED-----------SQ 51 +L + V+LSL+ + V+ + I I G I ++ Sbjct: 5 ILAGVILGVVVLSLILVAVLGSRTGPEGRRATGEQIGLIRIEGMIIGGTEGSFFGLGGAE 64 Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASA 110 E+ +I+ + + + A+++ L+SPGGSA A + I A+ +++ KPV+ + + +AS Sbjct: 65 EITAQIQEAADNPNIRAVVLRLNSPGGSAAASQEISEAVVRLREAGKPVVVSMGDTSASG 124 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 Y I+C ++ IVA ++ GSIGV+ Q ++ D LG+ ++ KS P K SP Sbjct: 125 AYWIACHADAIVANPATITGSIGVIIQTTHLTDLYDMLGIETETFKSGPHKDMGSPDRVP 184 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 P+ + Q +VD Y FV +V+ RN+P D+ L+DGRI+TG +A ++GL+D +G Sbjct: 185 TPEERAIFQGMVDDIYAQFVAVVARGRNMPEDQVRKLADGRIFTGRQAYELGLVDQLGDL 244 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 ++ ++ LG + + + +F D S L Sbjct: 245 QDAVRAAAELGGLDPDAPVVELG--RRPFFRDFWGGLSSLL 283 >gi|197122751|ref|YP_002134702.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter sp. K] gi|196172600|gb|ACG73573.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter sp. K] Length = 382 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 70/258 (27%), Positives = 129/258 (50%), Gaps = 5/258 (1%) Query: 34 NSPHVARIAIRGQIEDSQ-----ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 + P V I ++G I + ++++RI R + D A+++ + SPGGS A + I Sbjct: 115 SGPRVGVIDVKGTIGGGERDETEDILKRIRRFAEDGDLKAVVIRVDSPGGSVGASQEIHD 174 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 ++++ +K V+ + +AAS G +S A IVA +L GSIGV+ Q+P VK +KL Sbjct: 175 EVKRLAQKKVVVCSMGNLAASGGLYVSVACPKIVANPGTLTGSIGVISQFPNVKDLAEKL 234 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 GV +++VK+ +K +PF ++ P+ Q +V+++ FV+ V+E R + K ++ Sbjct: 235 GVKVETVKTGKLKDAGNPFRDMTPEDRAYWQGLVENTLGQFVKAVAEGRKLDEAKVRAIA 294 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 DGR+ TGA+AK+ GL+D +G + + + + L + Sbjct: 295 DGRVLTGAQAKEAGLVDQLGNFYDAVELAKQEAKLSGEAVLVYPPDEHGRFLEQLMGGAA 354 Query: 269 SSLLEDTIPLMKQTKVQG 286 ++ + + Q Sbjct: 355 GAVADAVATRVAQGAADA 372 >gi|220917534|ref|YP_002492838.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter dehalogenans 2CP-1] gi|219955388|gb|ACL65772.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter dehalogenans 2CP-1] Length = 382 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 70/258 (27%), Positives = 129/258 (50%), Gaps = 5/258 (1%) Query: 34 NSPHVARIAIRGQIEDSQ-----ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 + P V I ++G I + ++++RI R + D A+++ + SPGGS A + I Sbjct: 115 SGPRVGVIDVKGTIGGGERDETEDILKRIRRFAEDGDLKAVVIRVDSPGGSVGASQEIHD 174 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 ++++ +K V+ + +AAS G +S A IVA +L GSIGV+ Q+P VK +KL Sbjct: 175 EVKRLAQKKVVVCSMGNLAASGGLYVSVACPKIVANPGTLTGSIGVISQFPNVKDLAEKL 234 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 GV +++VK+ +K +PF ++ P+ Q +V+++ FV+ V+E R + K ++ Sbjct: 235 GVKVETVKTGKLKDAGNPFRDMTPEDRAYWQGLVENTLGQFVKAVAEGRKLDEAKVRAIA 294 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 DGR+ TGA+AK+ GL+D +G + + + + L + Sbjct: 295 DGRVLTGAQAKEAGLVDQLGNFYDAVELAKQEAKLSGEAVLVYPPDEHGRFLEQLMGGAA 354 Query: 269 SSLLEDTIPLMKQTKVQG 286 ++ + + Q Sbjct: 355 GAVADAVATRVAQGAADA 372 >gi|220905589|ref|YP_002480901.1| signal peptide peptidase SppA, 36K type [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869888|gb|ACL50223.1| signal peptide peptidase SppA, 36K type [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 383 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 70/281 (24%), Positives = 136/281 (48%), Gaps = 1/281 (0%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVED-NSPHVARIAIRGQIEDSQELIERIERISRDDSA 66 + +++ L L VV S +A +++ G I + + +E + ++R+ S Sbjct: 84 LFWAAIVIVLGALGVVAGSAGKDGGLMGGDRIALVSVTGPIMNVEPTLEWLRTVARNPSV 143 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 ++V + SPGG A A + ++ A++ + + PV + MAAS G ++S A + A + Sbjct: 144 KGVLVRVDSPGGGAAASQEVYDALKNLAQKMPVAVSMGSMAASGGLMVSMAGQRVFANPS 203 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 ++ GSIGV P ++ +DK+GV +++ K S + + Q V+ + Y Sbjct: 204 TVTGSIGVRMDVPQLQGLMDKVGVGQETLVVGQYKDAASYMRPMTAEQRAYFQGVLTNMY 263 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 FV +V++ R +P D+ L L++G+++TG EA +GL+D +GG+ + L + Sbjct: 264 DQFVDIVAQGRGMPRDRALKLANGKVYTGQEALGLGLVDELGGRGQALAWLAQKTGVPAE 323 Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 RK+ L+ + + L ++ L + GL Sbjct: 324 RKLLTRPREDGLLGRGLRVMLGAVLGPESDTLGGLASLAGL 364 >gi|291280462|ref|YP_003497297.1| signal peptide peptidase SppA [Deferribacter desulfuricans SSM1] gi|290755164|dbj|BAI81541.1| signal peptide peptidase SppA [Deferribacter desulfuricans SSM1] Length = 285 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 74/269 (27%), Positives = 139/269 (51%), Gaps = 2/269 (0%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63 V+K + + V++ + V FS + + N PH+ I + G I DS++++ + + + Sbjct: 7 VMKFLLSLIVIVIFIYFVVYLFSGKNEIVLNKPHIKVIKLEGIIVDSEKIVRELRKAEEN 66 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 D +I+ ++SPGG+ + I++AI+KV +KPV + + AS GY ++ A + I Sbjct: 67 DFVKGVIIRINSPGGAVAPSQEIYKAIRKV--KKPVYAAISTLGASGGYYVAAACDKIYV 124 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 S+ GSIGV+ ++ K DK+GV +S+KS K S E++ + +++Q +D Sbjct: 125 LGGSITGSIGVIMRFSNFKELYDKIGVKFESIKSGKFKDIGSSSREMSKEERELLQKAID 184 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 + Y FV + ++R+I D +DGRI TG +A K+G +D +G + ++ + Sbjct: 185 NVYKQFVNDILKTRHISKDIIKKYADGRILTGEQALKLGFVDKIGTYYDAFEDMKKDFHL 244 Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 + + + L+ +S LL Sbjct: 245 GEDVVLYEVKDKNSLLKELLEGVSKVRLL 273 >gi|188996018|ref|YP_001930269.1| signal peptide peptidase SppA, 36K type [Sulfurihydrogenibium sp. YO3AOP1] gi|188931085|gb|ACD65715.1| signal peptide peptidase SppA, 36K type [Sulfurihydrogenibium sp. YO3AOP1] Length = 274 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 73/253 (28%), Positives = 136/253 (53%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVS 72 +++ ++ L V+++ S+ ++ P V I I G I D + + I ++D+S A+++ Sbjct: 5 ILIGIIALIVIFYIISALRYESQPKVGLIRIEGTIVDYLDTVSIISEATKDESIKAVVID 64 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 + SPGG+ A + I+RAI+K++ +KPV+ + +AAS GY IS +N+I + ++ GSI Sbjct: 65 VDSPGGAVGASQEIYRAIEKLREKKPVVVSMGNVAASGGYYISTPANVIYSNPGTITGSI 124 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GV+ Q+ V L+K GV + ++KS K P + P+ +++ V Y F+ Sbjct: 125 GVIIQHVDVSEILNKFGVKVNTIKSGANKDILYPTKPLLPEQKALLEKTVMDVYDQFLDA 184 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 ++ R I D +DGR+++G EAK +GL+D +G ++ LG + + + Sbjct: 185 IARYRPIKKDVLKSYADGRVFSGNEAKALGLVDKIGNIQDAISEAKKLGKLEEDAPVIEL 244 Query: 253 NPPKNYWFCDLKN 265 P K + + Sbjct: 245 KPKKPLLDELMNS 257 >gi|13472792|ref|NP_104359.1| protease IV [Mesorhizobium loti MAFF303099] gi|14023539|dbj|BAB50145.1| protease IV [Mesorhizobium loti MAFF303099] Length = 318 Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 107/299 (35%), Positives = 167/299 (55%), Gaps = 14/299 (4%) Query: 9 KTRYVMLSLVTLTVVYFSW----SSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64 R + +V L V+ S H+A++ I G I + +ELI+R+E I + Sbjct: 20 FWRVAAIGIVALGVIALSAWFYRDDLGGSTVDHIAKVRIEGTITEDEELIKRLEDIRKSS 79 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 +I+++ SPGG+ GE+I+ ++KV KPV+ EV +AASAGY+I+ A++ IVA Sbjct: 80 KVKGVILAIDSPGGTTVGGESIYEEVRKVAADKPVVAEVGTLAASAGYMIASAADHIVAR 139 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 +TS+VGSIGVL QYP V +DKLG+ ++ VKSSP+KA PSPF N M++ ++ Sbjct: 140 KTSIVGSIGVLIQYPDVSGLMDKLGIKLEEVKSSPLKASPSPFKPTNDDERAMVRKLILD 199 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 SY WFV +V+E R + +++ L L+DG I+TG + GLID VGG+ E L GVD Sbjct: 200 SYDWFVGIVAERRKMTHEQALALADGSIFTGRQGVTNGLIDAVGGETEAIDWLATKGVDA 259 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP----------LMKQTKVQGLWAVWNP 293 ++ ++ + + F K + + +P + + GL +VW+P Sbjct: 260 KLKVVEWKDTERRGSFLWSKAMVKTVGSALGLPGYSSDVIHELGADRLFLDGLVSVWHP 318 >gi|237756040|ref|ZP_04584621.1| signal peptide peptidase SppA, 36K type [Sulfurihydrogenibium yellowstonense SS-5] gi|237691807|gb|EEP60834.1| signal peptide peptidase SppA, 36K type [Sulfurihydrogenibium yellowstonense SS-5] Length = 274 Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 74/253 (29%), Positives = 138/253 (54%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVS 72 +++ ++ L V+++ S+ ++ P V I I G I D + + I + ++D+S A+++ Sbjct: 5 ILIGIIALIVIFYVISALRYESQPKVGLIRIEGTITDYLDTVSIISQATKDESIKAVVID 64 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 + SPGG+ A + I+RAI+K++ +KPV+ + +AAS GY IS +N+I A ++ GSI Sbjct: 65 VDSPGGAVGASQEIYRAIEKLREKKPVVVSMGNVAASGGYYISAPANVIYANPGTITGSI 124 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GV+ Q+ V L+K GV + ++KS K P + P+ +++ V Y F+ Sbjct: 125 GVIIQHVDVSEILNKFGVKVNTIKSGANKDILYPTKPLLPEQKALLEKTVMDVYDQFLDA 184 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 + + R I D +DGR+++G EAK +GL+D +G ++ LG + + + Sbjct: 185 IVKYRPIKKDILKSYADGRVFSGNEAKALGLVDKIGNIQDAISEAKKLGKLKEDAPVIEL 244 Query: 253 NPPKNYWFCDLKN 265 P K+ + + Sbjct: 245 KPKKSLLDEFMNS 257 >gi|325294625|ref|YP_004281139.1| signal peptide peptidase SppA, 36K type [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065073|gb|ADY73080.1| signal peptide peptidase SppA, 36K type [Desulfurobacterium thermolithotrophum DSM 11699] Length = 292 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 77/279 (27%), Positives = 145/279 (51%), Gaps = 4/279 (1%) Query: 5 LKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 LKK T ++ + + F +SS V + + + G I+ S ++ ++++ R Sbjct: 4 LKKFFTFLGIVFFILILFSIFKGFFSSKVAVPGEKIGVVKVEGVIKRSDTYVKLLDKLER 63 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 + A+++ + SPGG A + I+ ++++ +KP++ + +AAS G IS + IV Sbjct: 64 NKEIKAIVLRVDSPGGVVGACQEIYDKVKEITKKKPIVVSMGSIAASGGLYISVPATKIV 123 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A ++ GSIGV+ Q VK DK+G+ + +VKS K +PF E + ++Q++Q ++ Sbjct: 124 ANPGTITGSIGVILQAYNVKELADKVGIKVITVKSGKFKDLLNPFREPDKGSLQILQALI 183 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + SY FV V++ R +P +K +DGR++TG +AKK+GL+D +GG E+ + L Sbjct: 184 NDSYEQFVEAVAKGRKLPIEKVKKFADGRVFTGRQAKKLGLVDELGGFEKAVEIARKLSK 243 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 S + P+ + L +L + ++ Sbjct: 244 SPSAK--VFEAKPERTFLQKLLGEKTEGMLNNLSRVLNG 280 >gi|302390807|ref|YP_003826627.1| signal peptide peptidase SppA, 36K type [Acetohalobium arabaticum DSM 5501] gi|302202884|gb|ADL11562.1| signal peptide peptidase SppA, 36K type [Acetohalobium arabaticum DSM 5501] Length = 326 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 83/301 (27%), Positives = 152/301 (50%), Gaps = 23/301 (7%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVV-------YFSWSSHVEDNSPHVARIAIRGQI------ 47 M F +KK+ ++ L+ L ++ + + +A I I G I Sbjct: 1 MGFSIKKMTVSILLSFLIILVILGGLGFLLINFLGNSDQAGVESIAVINIHGPISVGGTQ 60 Query: 48 -------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPV 99 ++ E+I++I + AL++ ++SPGGS+ A + I+R ++K K KPV Sbjct: 61 EVLSTSQTNASEVIKQINEAKDNKKIKALLLRVNSPGGSSAASDEIYRELKKFKKTGKPV 120 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 + + ++A S GY IS ++ I A +++ GSIGV+ Q+ ++ DKLGV + KS P Sbjct: 121 VISMGDIATSGGYYISAIADQIYANPSTITGSIGVIMQFKNLQDLYDKLGVDSITFKSGP 180 Query: 160 MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAK 219 K +P ++ + +++Q++VD Y F+ V+E R++ K L+DGRI+ G +AK Sbjct: 181 YKDIGNPDRKLTAEEKELLQNMVDEVYQEFLTAVAEGRSMSKSKVEKLADGRIYNGRKAK 240 Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP--PKNYWFCDLKNLSISSLLEDTIP 277 K+GL+D +G + ++ L ++ + +N P +F NL LL+ + Sbjct: 241 KLGLVDEMGTFYDAVKTTAKLAEMKADPNLIYYNRSSPLERFFRSTTNLIKGVLLQQGLK 300 Query: 278 L 278 + Sbjct: 301 I 301 >gi|239908953|ref|YP_002955695.1| putative signal peptide peptidase SppA [Desulfovibrio magneticus RS-1] gi|239798820|dbj|BAH77809.1| putative signal peptide peptidase SppA [Desulfovibrio magneticus RS-1] Length = 312 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 64/261 (24%), Positives = 132/261 (50%), Gaps = 4/261 (1%) Query: 10 TRYVMLSLVTLTVVYFSWSSHVED----NSPHVARIAIRGQIEDSQELIERIERISRDDS 65 +++ + F E + + + G I D++E++ I ++ DD+ Sbjct: 23 AAVILVFGIAAAFGVFGHDEEGESLLGLAEARIGVVRVEGPINDAEEVVAFIRKLREDDT 82 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 +I+ ++SPGG+ + ++ A+++++ +KPV+ +AAS GY +CA++ I + Sbjct: 83 VKGVILRINSPGGAFGPSQEMYMAVKRLRAKKPVVASFSAVAASGGYYAACAADRIFSNP 142 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 S+ GSIGV+ Q + + KLG+S+ S+ + +K SPF +++ + ++ +++ Sbjct: 143 GSITGSIGVITQLANARELMQKLGLSMDSLTTGKLKDAGSPFKQLSDEQRAYLEGLINDL 202 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 F V++ R + + +++DGR TGA A+ +GL+D +GGQE+ L + Sbjct: 203 NAQFSGDVAKERKLTPEAVALIADGRAMTGARAQAIGLVDELGGQEDAVGYLKKELGLKG 262 Query: 246 IRKIKDWNPPKNYWFCDLKNL 266 + KN +F L + Sbjct: 263 EVPLFKGPKKKNSFFEKLSSS 283 >gi|239831003|ref|ZP_04679332.1| signal peptide peptidase SppA, 36K type [Ochrobactrum intermedium LMG 3301] gi|239823270|gb|EEQ94838.1| signal peptide peptidase SppA, 36K type [Ochrobactrum intermedium LMG 3301] Length = 323 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 103/296 (34%), Positives = 184/296 (62%), Gaps = 12/296 (4%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSAT 67 + +++L + + PH+A++ I G I +++EL++R+++I+RDD+ Sbjct: 21 WRGAFLLLIAALIAGFASWSMRGTNFSQPHIAKVRIEGTIFENEELLKRLDKIARDDAVK 80 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +I+ L SPGG+ GEAIF A++K+ +KPV+T+V +AASAGY+I+ AS+ I+A +TS Sbjct: 81 GVILVLDSPGGTTVGGEAIFEAVRKIAAKKPVVTQVGTLAASAGYMIASASDHIIARQTS 140 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 +VGSIGVLFQYP + LD +GV ++++KSSP+KAEP+ FS + +A M+ +++ SY Sbjct: 141 IVGSIGVLFQYPDLSKLLDTIGVKVETIKSSPLKAEPNYFSPASDEAKGMISNMIMDSYA 200 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 WFV +V + R+ +++ L L++G ++TG +A LID +GG+EE L G+ + + Sbjct: 201 WFVDIVEKRRSFTHEQALALANGAVFTGRQALDKKLIDGLGGEEEAVAWLAGKGLSKDLP 260 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292 ++ +W P + L++L I + ++ ++ ++ + GL +VW+ Sbjct: 261 RL-EWKPVNDDTGFSLRDLIIHAGARLIGVPQEADGVLKQIAKERIFLDGLLSVWH 315 >gi|258592126|emb|CBE68431.1| Signal peptide peptidase SppA, 36K type precursor [NC10 bacterium 'Dutch sediment'] Length = 290 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 82/286 (28%), Positives = 144/286 (50%), Gaps = 4/286 (1%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSAT 67 I V +SL+ L + FS+ VA I + G I DS+E+IE++E+ + S Sbjct: 7 IVGLTVFVSLLILFSLAFSFGRWERLGGSKVALITVDGVILDSKEIIEQLEKYRTNPSVK 66 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAE 125 A+++ ++SPGG + I + K + +KP++ + +AAS GY I+ A+++IVA Sbjct: 67 AIVLRINSPGGGVAPSQEIHEEVLKTRQTDKKPIVASMGSVAASGGYYIASATDLIVANP 126 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 ++ GSIGV+ Q P + + K+GV VKS K SP E+ Q++Q ++D Sbjct: 127 GTITGSIGVVLQVPNISGLMQKIGVKSVVVKSGLHKDLASPTREMTDAERQILQGMLDDV 186 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 + F+ V+ R I K ++DGRI++G EA+ +GL+D +G ++ + AL + Sbjct: 187 HGQFIDAVAMGRRIDRKKVETMADGRIFSGREAQSLGLVDQLGNLQDAIERAGALAGIRG 246 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 + L+ SLL +P+ + + + +W Sbjct: 247 KPTVIQERKRGLLLMDLLRGSL--SLLNIDVPIYSPSTLSVNYLLW 290 >gi|197119483|ref|YP_002139910.1| peptidase S49 family peptidase [Geobacter bemidjiensis Bem] gi|197088843|gb|ACH40114.1| peptidase, S49 family [Geobacter bemidjiensis Bem] Length = 293 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 68/283 (24%), Positives = 136/283 (48%), Gaps = 1/283 (0%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 F ++L L + VV + V + ++G I D QE + ++ + + Sbjct: 7 FYGSLFIAGVLLLFLFCVGVVKVLLNDGDSLKGDGVGLVELKGLIVDGQETVRQLRELKK 66 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D+ A+++ + SPGG + I+ A++ V K V+ + +AAS GY + + +I Sbjct: 67 DERVKAVVLRIDSPGGVVGPSQEIYAAVKGVAKVKKVVVSMGSVAASGGYYAAAPATLIY 126 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A ++ GSIGVL ++ ++ +DK+G+ ++K+ K SP ++ + M+Q V+ Sbjct: 127 ANPGTITGSIGVLMKFSNIEGLMDKVGLKAFTIKTGKFKDVGSPVRTMSDEERGMLQGVI 186 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 DS++ F++ V+E R +P ++ ++DGRI++G +A L+D +G ++ + LG Sbjct: 187 DSTHQQFIKAVAEGRKLPVEQVRAIADGRIFSGEQALAAKLVDRIGTLQDAVEEAGRLGG 246 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 + ++ K+ F L + LE + Sbjct: 247 IKGEPELISPPRKKSRIFGAL-SERAEQQLEQFSGSDSGVSLD 288 >gi|116749550|ref|YP_846237.1| signal peptide peptidase SppA, 36K type [Syntrophobacter fumaroxidans MPOB] gi|116698614|gb|ABK17802.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49 [Syntrophobacter fumaroxidans MPOB] Length = 290 Score = 164 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 75/276 (27%), Positives = 138/276 (50%), Gaps = 3/276 (1%) Query: 5 LKKIKTRYVMLSLV---TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERIS 61 +K+ ++++S V S S + + I+G I ++ E+++ I+ Sbjct: 1 MKRRTLWFIVISFFVFCGFIVWLLGSDSDFFKGSNRIGVVEIKGTISNASEVLKSIKEFR 60 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 +D S A++V + SPGG + I+R +++ KPV+ + +AAS GY I+ A+N I Sbjct: 61 KDQSIRAILVRIDSPGGGVGPSQEIYRELKRTIKHKPVVASLGGIAASGGYYIASAANRI 120 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 VA+ ++ GSIGV+ P ++ K+G + ++K+ K +P E+ P+ ++MQ Sbjct: 121 VASPGTITGSIGVIMYLPMLRDLFGKIGYEMVTIKAGRYKDIGNPGREMTPEEKEIMQAS 180 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 +D ++ F+R V+ R +P +K ++DGRI G AK++GL+D +G E+ + ALG Sbjct: 181 MDEAHRQFIRDVAAGRKMPEEKIREIADGRIILGQTAKELGLVDELGNFEDAVDAAVALG 240 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 + I + L S L + Sbjct: 241 HVKGEADIVYAKKKRMSLLDLLLGSDASEKLSTWLD 276 >gi|319781468|ref|YP_004140944.1| signal peptide peptidase SppA, 36K type [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167356|gb|ADV10894.1| signal peptide peptidase SppA, 36K type [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 318 Score = 164 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 109/299 (36%), Positives = 168/299 (56%), Gaps = 14/299 (4%) Query: 9 KTRYVMLSLVTLTVVYFS----WSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64 R V + +V L V+ S H+A++ I G I + +ELI+R+E I Sbjct: 20 FWRVVAIGIVALGVIALSTWFYGDDFGGSTVDHIAKVKIEGTITEDEELIKRLETIRLSS 79 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 +I+S+ SPGG+ GE+I+ ++K+ KPV+ EV +AASAGY+I+ A++ IVA Sbjct: 80 KVKGVILSIDSPGGTTVGGESIYEEVRKLAADKPVVAEVGTLAASAGYMIASAADHIVAR 139 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 +TS+VGSIGVL QYP V +DKLGV ++ VKSSP+KA PSPF N M++ ++ Sbjct: 140 KTSIVGSIGVLIQYPDVSGLMDKLGVKLEEVKSSPLKAAPSPFKPTNDDERAMVRKLILD 199 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 SY+WFV +V+E R + ++ LVL+DG I+TG + GLID VGG+ L GVD Sbjct: 200 SYNWFVDIVAERRKMSREQALVLADGSIFTGRQGVANGLIDAVGGETVAIDWLATKGVDA 259 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL----------MKQTKVQGLWAVWNP 293 ++ ++ + + F K ++ + +P + + GL +VW+P Sbjct: 260 KLKVVEWKDTERRGGFLFSKAMAQTIGSALGLPAYSSDVIHELGADRLFLDGLVSVWHP 318 >gi|260460501|ref|ZP_05808752.1| signal peptide peptidase SppA, 36K type [Mesorhizobium opportunistum WSM2075] gi|259033606|gb|EEW34866.1| signal peptide peptidase SppA, 36K type [Mesorhizobium opportunistum WSM2075] Length = 318 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 164/299 (54%), Gaps = 14/299 (4%) Query: 9 KTRYVMLSLVTLTVVYFSW----SSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64 R +V L V+ S H+A++ I G I + ELI+R+E I + Sbjct: 20 FWRVAAFGIVALGVIALSAWLYGDDFGGATVDHIAKVRIEGTITEDDELIKRLETIRQSS 79 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 +I+++ SPGG+ GE+I+ ++K+ KPV+ EV +AASAGY+I+ A++ IVA Sbjct: 80 KVKGVILAIDSPGGTTVGGESIYEEVRKLAADKPVVAEVGTLAASAGYMIASAADHIVAR 139 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 +TS+VGSIGVL QYP V +DKLGV ++ VKSSP+KA PSPF N M++ ++ Sbjct: 140 KTSIVGSIGVLIQYPDVSGMMDKLGVKLEEVKSSPLKASPSPFKPTNDDERAMVRKLILD 199 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 SY WFV +V+E R + +++ L L+DG I+TG + GLID VGG+ L GVD Sbjct: 200 SYDWFVGIVAERRKMSHEQALALADGSIFTGRQGVANGLIDAVGGETVAIDWLATKGVDA 259 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP----------LMKQTKVQGLWAVWNP 293 ++ ++ + F K++ + +P + + GL +VW+P Sbjct: 260 KLKVVEWKETERRGGFLWSKSMVKTIGSALGLPDSGGDIIHELGADRLFLDGLVSVWHP 318 >gi|77919477|ref|YP_357292.1| signal peptide peptidase SppA, 67K type [Pelobacter carbinolicus DSM 2380] gi|77545560|gb|ABA89122.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Pelobacter carbinolicus DSM 2380] Length = 298 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 73/257 (28%), Positives = 123/257 (47%), Gaps = 2/257 (0%) Query: 35 SPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 + + I G + S+ ++++ D S A+I+ ++SPGG+ + I + +V Sbjct: 40 GERIGVVEISGMLMVSEPTVKQLVSFKEDHSIKAVILRVNSPGGAVAPSQEIHDEVARVA 99 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 KPV+ + +AAS GY +S + IVA ++ GSIGV+ Q + DKLG+ + Sbjct: 100 ALKPVVVSMASVAASGGYYVSIPAQRIVANPGTITGSIGVIMQTTNYQELYDKLGLKNEV 159 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 VKS K SP + P +++Q V+D Y FV VS+ R +P +K L+DGRI+T Sbjct: 160 VKSGQHKDLGSPLRPMTPADRKILQGVIDDVYDQFVSAVSKGRKLPVEKVRTLADGRIFT 219 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLED 274 G +A + GL+D +GG ++ L K+ K S+S + Sbjct: 220 GRQAMQAGLVDSLGGMQDAVAIASELAGISGEPKLVYPPKDKESLLKYFIEESVSQ-VGR 278 Query: 275 TIPLMKQTKVQGLWAVW 291 + +Q + +W Sbjct: 279 ALQQRQQGS-PAMQYLW 294 >gi|51893930|ref|YP_076621.1| putative proteinase IV [Symbiobacterium thermophilum IAM 14863] gi|51857619|dbj|BAD41777.1| putative proteinase IV [Symbiobacterium thermophilum IAM 14863] Length = 312 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 75/275 (27%), Positives = 138/275 (50%), Gaps = 22/275 (8%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSW-------SSHVEDNSPHVARIAIRGQIE----- 48 M+ +K+ ++++V L++ W S + VA + + G I Sbjct: 1 MKNTMKRWIAAGAIVAIVVLSLAVAFWQGTGREVGSPKGPSGGQVALVRVEGTIVSGEGS 60 Query: 49 ---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKP 98 S+ +++ ++R + D + A+++ ++SPGGS A I A+++V+ KP Sbjct: 61 GSLLSGAGAGSETIVKHLDRAAEDPAVKAVVLRVNSPGGSVVASWEIAEAVRRVQDAGKP 120 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 V+ + E AAS GY IS ++ I+A+ ++ GSIGV+ Q + +K+G + KS Sbjct: 121 VVVSMGESAASGGYWISAGADRIIASPDTMTGSIGVILQVGNLSEVYEKVGYKTYTFKSG 180 Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEA 218 P K SP E+ ++QD+VD +Y FV +V+E R + + ++DGRI TG +A Sbjct: 181 PFKDMGSPDREMTDAERDLLQDLVDETYEAFVPVVAEGRGMDEAQVRKIADGRILTGRKA 240 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 ++GL+D +G + Q L ++++ N Sbjct: 241 LELGLVDELGDLKRAVQVAAELAGLPGEPEVREMN 275 >gi|322420579|ref|YP_004199802.1| signal peptide peptidase SppA, 36K type [Geobacter sp. M18] gi|320126966|gb|ADW14526.1| signal peptide peptidase SppA, 36K type [Geobacter sp. M18] Length = 293 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 133/275 (48%), Gaps = 4/275 (1%) Query: 1 MEFVLKKIKTRYVMLSLVTL----TVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIER 56 M+ +L I ++ L L+ V V + ++G I D QE+I + Sbjct: 1 MKKLLLWIFAVWLGLFLLFAACVAVVTALIGDRDGLAGGTGVGLVELKGVIVDGQEIIRQ 60 Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116 + + +D+ A++ + SPGG + I+ A++ + K V+ + +AAS GY +S Sbjct: 61 LRELRKDEDVKAVVFRVDSPGGVVGPSQEIYAAVKDLAKVKKVVVSMGSVAASGGYYVSA 120 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 + +I A ++ GSIGVL ++ ++ +DK+G+ ++K+ K SP + + Sbjct: 121 PATLIYANPGTITGSIGVLMKFSNIEGLMDKVGMKAFTIKTGKFKDTGSPARSMTGEERA 180 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 M+Q V+DS++ FV+ V++ R +P ++ ++DGRI++G +A + L+D +G ++ Sbjct: 181 MLQGVIDSTHGQFVQAVAQGRKLPVEQVRGIADGRIFSGEQALALKLVDRIGSLQDAVDE 240 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 L + ++ K L + L Sbjct: 241 AGRLAGIKGEPRLIKPPKKKGQVLDLLVEGAAQRL 275 >gi|254478286|ref|ZP_05091666.1| signal peptide peptidase SppA, 36K type [Carboxydibrachium pacificum DSM 12653] gi|214035751|gb|EEB76445.1| signal peptide peptidase SppA, 36K type [Carboxydibrachium pacificum DSM 12653] Length = 306 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 86/290 (29%), Positives = 148/290 (51%), Gaps = 13/290 (4%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----------SQELIER 56 I + L +L + S S +S + + I I D + + +E+ Sbjct: 11 ILVLVFAIVLASLFLTQPSTESQKTVSSNTIGVVTIEEVIGDVSSNILGIPQFTSDPVEQ 70 Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLIS 115 I R D++ A++V ++SPGGSA I+ ++++K K VI + + AAS GY+ + Sbjct: 71 IRRAQEDNTVKAVVVKINSPGGSAAKSVEIYTELKRLKETGKKVIVSMGDAAASGGYMAA 130 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 C +IIVA ++ GSIGV+ QY + DKLG+ ++KS P K SP ++ P+ Sbjct: 131 CGGDIIVANPATITGSIGVIMQYTNYEGLYDKLGLKEITIKSGPYKDMGSPTRDLTPEEK 190 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 +++Q ++D +Y FV +VSE R +P +K L+DGRI+TG +A KVGL+D +G + Sbjct: 191 RILQGIIDDTYEQFVEIVSEGRKMPIEKVKELADGRIFTGRQALKVGLVDKLGDFYDAVD 250 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 + +K + P + W + + S+L E + ++K + Sbjct: 251 IAAKEAGIKGKPVLKYYTTP-SPWSILFGSTAQSTLQERGLEILKVLFID 299 >gi|302390691|ref|YP_003826512.1| signal peptide peptidase A [Thermosediminibacter oceani DSM 16646] gi|302201319|gb|ADL08889.1| signal peptide peptidase A [Thermosediminibacter oceani DSM 16646] Length = 307 Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 80/299 (26%), Positives = 150/299 (50%), Gaps = 18/299 (6%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNS-----PHVARIAIRGQIED----------S 50 K++ T +++ ++ + F+ E+ S V I + G I S Sbjct: 5 KRLITIALIVLVIASVIAAFALGPGREEGSTAAEDNMVGVINLEGVITGGSGDAFLSSGS 64 Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAAS 109 ++ ++ S+D S AL++ ++SPGGSA A + I++ + KV + K V+ + ++AAS Sbjct: 65 DHIVHQLHEASQDPSIKALVIRINSPGGSAAASQEIYQEVLKVKEAGKKVVVSMGDVAAS 124 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 GY ++ A++ IVA ++ GSIGV+ ++ V+ +KLG+ + +KS+ K SP Sbjct: 125 GGYWVASAADKIVANPATITGSIGVIMEFQNVEGLFEKLGLKVNVIKSAEHKDIGSPTRP 184 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 + + + Q +VD Y+ F+ +V++ R + +K L+DGRI+TG +AK++GL+D +G Sbjct: 185 MTEEERAIFQGMVDDIYNQFIDVVAKGRKMDREKVKELADGRIFTGRQAKELGLVDELGN 244 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + + L + +IK++ + L + L I L GL Sbjct: 245 FYDALKIAAELAGIEGEPEIKEYG--RKTPLEILMTGAPGLLQSRNIILPWGIDPAGLL 301 >gi|150395248|ref|YP_001325715.1| signal peptide peptidase SppA, 36K type [Sinorhizobium medicae WSM419] gi|150026763|gb|ABR58880.1| signal peptide peptidase SppA, 36K type [Sinorhizobium medicae WSM419] Length = 319 Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 122/296 (41%), Positives = 183/296 (61%), Gaps = 10/296 (3%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66 + V+ + + W E HVAR+A+ G I+D +EL+ER+ERI+ + S Sbjct: 20 RWAAAAVLFAGGLALFAFSGWGDVTERARDHVARVAVTGLIQDDRELVERLERIAENQSV 79 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 ALIV++SSPGG+ Y GE I++A++KV +KPV+++V +AASAGYLI+ A + IVA ET Sbjct: 80 KALIVTISSPGGTTYGGEVIYKAVRKVAAKKPVVSDVRTLAASAGYLIALAGDRIVAGET 139 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 S+ GSIGV+FQYP VK +DKLGVS++S+KS P+KAEPSPF + +A M+Q ++D SY Sbjct: 140 SITGSIGVIFQYPQVKTLMDKLGVSLESIKSRPLKAEPSPFHPPSDEARAMIQAMIDDSY 199 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 WFV LV+E R +P + L L+DGRI+TG +A + L+D +GG +E+ L V + + Sbjct: 200 GWFVDLVAERRKLPRAEALGLADGRIFTGRQALEGKLVDELGGDDEIRAFLAERKVSKDL 259 Query: 247 RKIKDWNPPK--NYWFCDLKNLSISSLLEDTIPLMKQTK--------VQGLWAVWN 292 + P ++ L ++ +L + P MK + + GL +VW Sbjct: 260 PVLDWEAPSSTLSFGLGSLLAEAVKALGYEAFPAMKGLEKTGLDKLFLDGLLSVWQ 315 >gi|170748863|ref|YP_001755123.1| signal peptide peptidase SppA, 36K type [Methylobacterium radiotolerans JCM 2831] gi|170655385|gb|ACB24440.1| signal peptide peptidase SppA, 36K type [Methylobacterium radiotolerans JCM 2831] Length = 320 Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 98/290 (33%), Positives = 158/290 (54%), Gaps = 9/290 (3%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVS 72 +++++ L + + P +ARI++ G I S+ + ++R+ D+ +IVS Sbjct: 29 LIVAVGALGYRVRTGADGAFAVQPQIARISVSGFIAGSEATAKLMKRVGDSDAVKGVIVS 88 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 ++SPGG+ E IFR ++ + +KP++ V AAS Y+ + A++ IVA ETSLVGSI Sbjct: 89 INSPGGTTTGSEEIFRNLRALAAKKPIVAFVDGTAASGAYITAIAADHIVARETSLVGSI 148 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GVLFQYP LDK+GV ++SVKSSP+KAEPS F+ +P+A + VV +Y WF L Sbjct: 149 GVLFQYPDFSGLLDKVGVKVESVKSSPLKAEPSGFTPTSPEARAALASVVGDTYAWFKGL 208 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 V+E R + + +SDGR+++G ++ + L+D +GG+ + L + Q+ IKDW Sbjct: 209 VAERRGMDPAQLSTVSDGRVFSGRQSVPLKLVDELGGERQAVAWLESARGVQANLPIKDW 268 Query: 253 NPPKNYWFCDLKNLSISSLL---------EDTIPLMKQTKVQGLWAVWNP 293 P F I + L + + G+ A+W P Sbjct: 269 KPASESRFSLWSAAGIGADLLGLEGLAARLRAVGAEAEAARGGMLALWRP 318 >gi|303326177|ref|ZP_07356620.1| signal peptide peptidase SppA, 36K type [Desulfovibrio sp. 3_1_syn3] gi|302864093|gb|EFL87024.1| signal peptide peptidase SppA, 36K type [Desulfovibrio sp. 3_1_syn3] Length = 358 Score = 162 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 74/288 (25%), Positives = 141/288 (48%), Gaps = 7/288 (2%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVE---DNSPHVARIAIRGQIEDSQELIERIERISRDD 64 +L+LV + + FS + + +A + +RG I D + I +I R+ Sbjct: 67 FIFWLSLLALVLIGLAVFSRDENGQGLLSGGDRLALVMVRGPIMDVAPTLAWIRKIERNP 126 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 +++ + SPGG A A + ++ A+ ++ ++P+ + MAAS G ++S A I A Sbjct: 127 QVKGVLLRVDSPGGGAAASQEVYDALARLARKRPLAVSMGSMAASGGLMVSMAGGRIFAN 186 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 +++ GSIGV P ++ L K+GV +++ ++P K S ++P+ + V+ Sbjct: 187 PSTVTGSIGVRMDIPQLQGLLGKIGVGQETLVTAPYKNAGSYLHPLSPEDRAYFEGVLKD 246 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 + FV +V++ R++P+++ L+ G+I+TG EA K+GL+D +GGQ+ + L Sbjct: 247 MHEQFVDIVAKGRDMPHERAGGLASGKIFTGQEALKLGLVDELGGQDAALRWLAEQTGVP 306 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + RK+ P ++ W D S D L + + W Sbjct: 307 AERKLLT-KPKESSWLADSLK---SWFGLDLSTLATMGGLNAAGSDWR 350 >gi|15964138|ref|NP_384491.1| putative protease IV transmembrane protein [Sinorhizobium meliloti 1021] gi|307301283|ref|ZP_07581045.1| signal peptide peptidase SppA, 36K type [Sinorhizobium meliloti BL225C] gi|307317954|ref|ZP_07597391.1| signal peptide peptidase SppA, 36K type [Sinorhizobium meliloti AK83] gi|15073314|emb|CAC41822.1| Putative protease IV transmembrane protein [Sinorhizobium meliloti 1021] gi|306896356|gb|EFN27105.1| signal peptide peptidase SppA, 36K type [Sinorhizobium meliloti AK83] gi|306903739|gb|EFN34326.1| signal peptide peptidase SppA, 36K type [Sinorhizobium meliloti BL225C] Length = 319 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 127/301 (42%), Positives = 186/301 (61%), Gaps = 14/301 (4%) Query: 5 LKKIKTRYVMLSLV--TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 L + V + + + W E HVAR+A+ G I+D +EL+ER+ERI+ Sbjct: 16 LSFWRWAAVAVLVAGGLALFAFSGWGDVTERARDHVARVAVTGLIQDDRELVERLERIAD 75 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 + S ALIV++SSPGG+ Y GE I++AI+KV +KPV+++V +AASAGYLI+ A + IV Sbjct: 76 NQSVKALIVTISSPGGTTYGGEVIYKAIRKVAEKKPVVSDVRTLAASAGYLIALAGDRIV 135 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A ETS+ GSIGV+FQYP VK +DKLGVS++S+KS P+KAEPSPF + +A M+Q ++ Sbjct: 136 AGETSITGSIGVIFQYPQVKTLMDKLGVSLESIKSRPLKAEPSPFHPPSDEARAMIQAMI 195 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 D SY WFV LV+E R +P + L L+DGRI+TG +A + L+D +GG +E+ L V Sbjct: 196 DDSYGWFVDLVAERRKLPRPEALALADGRIFTGRQALEGKLVDELGGDDEIRAFLAERKV 255 Query: 243 DQSIRKIKDWNPPK---NYWFCDLKNLSISSLLEDTIPLMKQTK--------VQGLWAVW 291 + + + DW P ++ L S+ +L + P MK + + GL +VW Sbjct: 256 SKDLP-VLDWEAPSGTLSFGLGSLLAESVKALGYEAFPTMKSLEKTGLDKLFLDGLVSVW 314 Query: 292 N 292 Sbjct: 315 Q 315 >gi|253699780|ref|YP_003020969.1| signal peptide peptidase SppA, 36K type [Geobacter sp. M21] gi|251774630|gb|ACT17211.1| signal peptide peptidase SppA, 36K type [Geobacter sp. M21] Length = 293 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 67/273 (24%), Positives = 132/273 (48%), Gaps = 1/273 (0%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVS 72 ++L L + +V + V + ++G I D QE + ++ + +D A+++ Sbjct: 17 LLLFLACVGIVKALLNDGDSLKGDGVGLVELKGPIIDGQETVRQLRELKKDKRVKAVVLR 76 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 + SPGG + I A++ V K V+ + +AAS GY + + +I A ++ GSI Sbjct: 77 IDSPGGVVGPSQEIHAAVKGVAKVKKVVVSMGSVAASGGYYAAAPATLIYANPGTITGSI 136 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GVL ++ ++ +DK+G+ ++K+ K SP ++ + M+Q V+DS++ F+R Sbjct: 137 GVLMKFSNIEGLMDKVGLKAFTIKTGKFKDVGSPARTMSDEERGMLQGVIDSTHQQFIRA 196 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 V+E R +P ++ ++DGRI++G +A L+D +G ++ + LG + ++ Sbjct: 197 VAEGRKLPVEQVRAIADGRIFSGEQALAAKLVDRIGTLQDAVEEAGRLGGVKGEPELIRP 256 Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 K F L + LE + Sbjct: 257 PRKKTRIFGVL-SERAEQHLEQFSGSDSGVSLD 288 >gi|299133338|ref|ZP_07026533.1| signal peptide peptidase SppA, 36K type [Afipia sp. 1NLS2] gi|298593475|gb|EFI53675.1| signal peptide peptidase SppA, 36K type [Afipia sp. 1NLS2] Length = 326 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 86/302 (28%), Positives = 157/302 (51%), Gaps = 15/302 (4%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDS 65 + + V+L++V ++ +AR+ I G I + E + +ER+ + D Sbjct: 22 RVVSGLLVILAVVGGGMLLTPAGRQALTGKSAIARVKIEGLIRSNDERVAALERLEKSD- 80 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 A A+IV ++SPGG+ E +F A+ ++K +KP++ + + AS Y+ + AS+ I+A + Sbjct: 81 AAAVIVHINSPGGTTAGSEQLFDALTRLKAKKPLVVVIEGLGASGAYITALASDHIIAQQ 140 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 TSLVGSIGVLFQ+P L +GV ++ VKS+P+KA P+ + +P+A + +V S Sbjct: 141 TSLVGSIGVLFQFPNFTDLLKTVGVKVEEVKSAPLKAAPNGYEPTSPEARAALDALVKDS 200 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 + WF LV R++ +SDGR++TG +A + L+D +G ++ + L A + Sbjct: 201 FAWFKDLVKTRRHMDDATLQTVSDGRVFTGRQAMGLKLVDELGDEKTAVKWLQAQNKIKG 260 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLE--------------DTIPLMKQTKVQGLWAVW 291 ++D+ + + ++ LE L +Q +++G+ A+W Sbjct: 261 DLPVRDYKLSPRFSDMTFLRAAAATTLESLGLPTVARFVGGNGAASLSEQLQLEGMLALW 320 Query: 292 NP 293 P Sbjct: 321 RP 322 >gi|17988076|ref|NP_540710.1| putative protease IV [Brucella melitensis bv. 1 str. 16M] gi|17983826|gb|AAL52974.1| putative protease iv [Brucella melitensis bv. 1 str. 16M] Length = 301 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 107/290 (36%), Positives = 177/290 (61%), Gaps = 12/290 (4%) Query: 14 MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSL 73 ML + F E N PH+A++ I G I +++EL++R+++I+ DD+ +I+ L Sbjct: 1 MLLAALIAGFAFYSLRSAEFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLL 60 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 SPGG+ GEAI+ A++K+ +KPV+T+V +AASAGY+I+ AS+ IVA +TS+VGSIG Sbjct: 61 DSPGGTTVGGEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIG 120 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 VLFQYP + LD LGV ++++KSSP+KAEP+ FS + +A M++ ++ SY WFV +V Sbjct: 121 VLFQYPDLSKLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRSMIMDSYDWFVGIV 180 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 E R +++ L L++G ++TG +A LID +GG+ E L G+ + ++ +W Sbjct: 181 QERRAFTHEQALALANGAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPRL-EWK 239 Query: 254 PPKNYWFCDLKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292 P + L++L I + ++ + + + GL +VW+ Sbjct: 240 PVGSETGFSLRDLIIHAGARLLGLPQEADGAIKEIARDRIFLDGLLSVWH 289 >gi|118593739|ref|ZP_01551108.1| Clp protease:Peptidase U7:Signal peptide peptidase, SppA 36 kDa type [Stappia aggregata IAM 12614] gi|118433649|gb|EAV40312.1| Clp protease:Peptidase U7:Signal peptide peptidase, SppA 36 kDa type [Stappia aggregata IAM 12614] Length = 328 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 100/298 (33%), Positives = 174/298 (58%), Gaps = 12/298 (4%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66 +I T V+ + + ++Y S S + + H+ARI I G I +S++ ++ I++I + D+ Sbjct: 22 RIATFVVIAAALIGGLLYVSGGSELSKRTAHIARIPIEGVILESRKTLQMIDKIGKSDAV 81 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 +++S++SPGGS GEA++ A++K+ +KPV+ E+ + SAGY+I+ AS+ IVA Sbjct: 82 KGVVISINSPGGSTTGGEALYEALRKLSEKKPVVAEIRTIGTSAGYMIALASDHIVARYN 141 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 S+ GSIGVLFQ+ + ++ +GV + +VKS+P+KAEP +S+ +P+A M+Q +V++SY Sbjct: 142 SITGSIGVLFQFGNISKLMETVGVEMDAVKSAPLKAEPDFYSQTSPEARAMLQKLVNNSY 201 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 WFV LV+E R++ + L+DGRI TG +A L+D +GG++ L + Sbjct: 202 DWFVSLVAERRSLAPPRAKELADGRILTGHDALTEKLVDAIGGEDAAIDWLVSEKGVAKD 261 Query: 247 RKIKDWN--------PPKNYWFCDLKNLSISSLLE---DTIPLM-KQTKVQGLWAVWN 292 + W+ P + + S+LLE + L+ + + GL +VW Sbjct: 262 LPVVTWSTNDNLEELPFSSRVSREFGKGIGSALLEPVSEAKGLIPRGLTLDGLVSVWQ 319 >gi|94971132|ref|YP_593180.1| signal peptide peptidase A [Candidatus Koribacter versatilis Ellin345] gi|94553182|gb|ABF43106.1| signal peptide peptidase A [Candidatus Koribacter versatilis Ellin345] Length = 303 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 68/288 (23%), Positives = 129/288 (44%), Gaps = 9/288 (3%) Query: 11 RYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQELIERIERISRDDSA 66 + + +VY S + +A + + G I D + ++ ++++ D S Sbjct: 19 AFFLFVAAIFVLVYVSVRADDHAQFTGFGDRIAVVDLEGVIVDPKSVVAQLKKYGDDSSI 78 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAA 124 A+I+ ++SPGG A A E I+R +++V++ K + + + AS Y ++ A+N I A Sbjct: 79 KAIILHINSPGGGAAASEEIYREVRRVRDEKHKRIVASIETVGASGAYYVASATNKIYAN 138 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 E S+VGSIGV+ ++ L + ++K+ K SP ++ P MQ ++D Sbjct: 139 EASIVGSIGVIAEWYNYADLLKWAKLKEITMKAGEFKDTGSPTRDMTPAEKAYMQALIDD 198 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 + F+ V+ R + + ++DGR+WTG +A + LID + + Sbjct: 199 MHSQFIHNVATGRKVKDEDIRPIADGRVWTGRQALPMKLIDQIADFQATVADTAKSVGIS 258 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + + DL +S L+ D LM+ G + +W Sbjct: 259 GEPTLVTPERERKSLL-DLMFGDVSDLIPDRAKLMQTNV--GFYYLWK 303 >gi|182679840|ref|YP_001833986.1| signal peptide peptidase SppA, 36K type [Beijerinckia indica subsp. indica ATCC 9039] gi|182635723|gb|ACB96497.1| signal peptide peptidase SppA, 36K type [Beijerinckia indica subsp. indica ATCC 9039] Length = 324 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 97/302 (32%), Positives = 153/302 (50%), Gaps = 15/302 (4%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSS---HVEDNSPHVARIAIRGQIEDSQELIERIERIS 61 K R ++LV + ++ S H+AR++I G I ++ + I+R+ Sbjct: 18 RKLSFWRIATMALVLAGIASLAYVSLGFRSGQQRAHIARLSISGLITGDRDTLRLIKRV- 76 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 D SA A++VS+ SPGG+ E I+ A++++ +KP V MAAS GY+ + ++ I Sbjct: 77 EDSSAQAVLVSIESPGGTTTGAERIYEALRRLSRKKPTAAVVGTMAASGGYIAALGTDQI 136 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 VA SLVGSIGVLFQYP V LD LGV ++ VKSSP+KA P+ F P+A + + Sbjct: 137 VAQGNSLVGSIGVLFQYPNVARLLDTLGVKVEEVKSSPLKASPNGFEPTTPEARAALVSL 196 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 ++ SY WF LV E R + + +SDGR++TG + + L+D +GG++E L Sbjct: 197 INDSYSWFKGLVKERRGMDDAQLANVSDGRVFTGRQGIPLHLVDRLGGEQEAIAWLEQQK 256 Query: 242 VDQSIRKIKDWNPPKNY-----------WFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 ++DW + L S++ +L P + GL ++ Sbjct: 257 GVGKNLPVRDWKHERGLGRWGIISLAAGLAEKLGLASLALVLNGESPFAGSPLLDGLVSI 316 Query: 291 WN 292 W Sbjct: 317 WQ 318 >gi|218886796|ref|YP_002436117.1| signal peptide peptidase SppA, 36K type [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757750|gb|ACL08649.1| signal peptide peptidase SppA, 36K type [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 297 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 76/290 (26%), Positives = 135/290 (46%), Gaps = 12/290 (4%) Query: 7 KIKTRYVMLSLVTLTVVYFSW-----SSHVEDNSPHVARIAIRGQIEDSQELIERIERIS 61 I ++L+ V L + + P V + + G I D + ++ + Sbjct: 15 FIFGFLLILAAVALFMGASAALRHLTGGAGPFAGPRVGVVRVEGMIADISKTTAWMDTLR 74 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 D S +++ + SPGG A + + A++++ KPV+ + +AAS GY IS + + Sbjct: 75 DDPSVRGVLLRVDSPGGGVAASQELLDAVRRMARVKPVVVSMGTVAASGGYYISLGATRV 134 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 +A +L GSIGV + P V+ +DKLG++ +++ S MK SPF + P+ + +Q + Sbjct: 135 IANPATLTGSIGVKMELPNVQGLMDKLGLARQTLVSGDMKDAGSPFRAMTPQEREYLQAL 194 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 V Y FV V+ SRN+P +K ++DGR TG +A ++GL+D +GG + L L Sbjct: 195 VMDMYDQFVTEVANSRNLPVEKVRAVADGRALTGRQAHELGLVDALGGMDMALTDLQQLC 254 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 + + P + W D + + + G V+ Sbjct: 255 GIAERPVLVE-QPKPSSWLRDALETVLD------LQPASRVITPGFLYVY 297 >gi|158521991|ref|YP_001529861.1| signal peptide peptidase SppA, 36K type [Desulfococcus oleovorans Hxd3] gi|158510817|gb|ABW67784.1| signal peptide peptidase SppA, 36K type [Desulfococcus oleovorans Hxd3] Length = 299 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 135/291 (46%), Gaps = 3/291 (1%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 F + + + V VV ++ V + ++G I S+++IE ++ Sbjct: 10 FFILVLSAIVFGSATVISFVVGLYSGKPAFESGERVGIVEVKGVILSSEQVIEELKTFRE 69 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 +D+ A++V + SPGG+ + IFR I K K V+ + +AAS GY ++ A+ I Sbjct: 70 EDAIRAIVVRIDSPGGAVGPAQEIFREIHKTAATKKVVASMGSVAASGGYYVASATEKIF 129 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +L GSIGV+ Y + +DK+G+ +KS K SP + + +++Q+ Sbjct: 130 ANPGTLTGSIGVIMSYTNFQELMDKIGLLPVVIKSGKYKDIGSPVRPLEEREKRILQEFA 189 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 D + F+ V+ RN+ L+DGRI+TG +A ++GL+D +G E+ +++ + Sbjct: 190 DDIHQQFIDDVAAGRNMDAGAVAKLADGRIYTGRKALELGLVDELGNLEDAVETVGRMAG 249 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 + + +L S + L +T+ + ++ P Sbjct: 250 IKGDIVQVYPERKTKFSLTELLTGSSAEELANTLMHGQALSAG---YLYRP 297 >gi|146337268|ref|YP_001202316.1| S49 family peptidase [Bradyrhizobium sp. ORS278] gi|146190074|emb|CAL74066.1| Putative peptidase S49 family; putative signal peptide peptidase SppA [Bradyrhizobium sp. ORS278] Length = 326 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 95/308 (30%), Positives = 157/308 (50%), Gaps = 20/308 (6%) Query: 5 LKKIKTRYVMLSLV-----TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIER 59 K R V + + + + S +AR+ I G I QE +E +ER Sbjct: 16 RKLTFWRVVAVVIAIGALSAIGLAMSPRGRTALSTSGSIARVNIEGLIRSDQERVEALER 75 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119 + + SA A+IV ++SPGG+ E ++ ++ ++K +KP++ V +AAS GY+ + AS+ Sbjct: 76 L-ENSSAEAVIVHINSPGGTTAGSEQLYDSLVRLKAKKPLVVVVEGLAASGGYIGAIASD 134 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 IVA ++SLVGSIGVLFQYP V L +GV I+ VKSSP+KA P+ + +P+A + Sbjct: 135 HIVAQQSSLVGSIGVLFQYPNVSELLKTVGVKIEEVKSSPLKAAPNGYEPTSPEARAALD 194 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 D+V SY WF LV RN+ ++DGR++TG +A ++ LID +G ++ L A Sbjct: 195 DLVKDSYAWFRGLVKTRRNMDDALLEKVADGRVFTGRQAVELKLIDELGDEKTAVAWLVA 254 Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLED--------------TIPLMKQTKVQ 285 + ++D+ + + S L+ + + + + Sbjct: 255 NKNVKKDLPVRDYKLVPRFGDLTFLRTATSIALDAVGLSGIARQIERTGVVQAVDRVGLD 314 Query: 286 GLWAVWNP 293 G+ A+W P Sbjct: 315 GMLALWTP 322 >gi|312113690|ref|YP_004011286.1| signal peptide peptidase SppA, 36K type [Rhodomicrobium vannielii ATCC 17100] gi|311218819|gb|ADP70187.1| signal peptide peptidase SppA, 36K type [Rhodomicrobium vannielii ATCC 17100] Length = 328 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 93/312 (29%), Positives = 162/312 (51%), Gaps = 23/312 (7%) Query: 5 LKKIKTRYVMLSLVTLTVVYFS------------WSSHVEDNSPHVARIAIRGQIEDSQE 52 +++K R + ++ + + +S H+AR+ I G I DS+ Sbjct: 11 RRRLKRRLTVWRVLAIVAFVAALAFAGARSGGDDGASGFGIGRDHIARVTISGFIGDSKS 70 Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 + +E++ +DD+ A+IV++ SPGG+ GEA++ ++++ N KPV MA SA Y Sbjct: 71 RHDMLEKLRKDDNVKAVIVAVDSPGGTTTGGEALYEDLRELANAKPVAAVFGTMATSAAY 130 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L A++ IVA ++ GS+GV+FQ+ V L K+GV + V+S +KA+PSPF+ V+ Sbjct: 131 LGGIATDYIVARGNTITGSVGVIFQWADVSELLSKVGVKVDEVRSGALKAKPSPFTPVDD 190 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 A + + +V S WFV LV+E R + GRI+TG +A +VGLID +G ++ Sbjct: 191 AARALTEQLVKDSQGWFVGLVAERRKAAVSSLEDIKTGRIYTGRQAAQVGLIDAIGDEQV 250 Query: 233 VWQSLYALGVDQSIRKIKDWNP-------PKNYWFCDLKNLSISSLLE----DTIPLMKQ 281 + S K++DW P L ++SL++ + + ++K Sbjct: 251 AIKWFTDARKVPSGLKVRDWKPGQSVSSLLSASMSSLALKLGVASLVDAAVLEGLDILKD 310 Query: 282 TKVQGLWAVWNP 293 + GL+++W+P Sbjct: 311 RPLDGLFSIWHP 322 >gi|95929491|ref|ZP_01312234.1| signal peptide peptidase SppA, 36K type [Desulfuromonas acetoxidans DSM 684] gi|95134607|gb|EAT16263.1| signal peptide peptidase SppA, 36K type [Desulfuromonas acetoxidans DSM 684] Length = 298 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 75/274 (27%), Positives = 135/274 (49%), Gaps = 4/274 (1%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPG 77 + L + S S V I + G I DS+ +++++ ++ + A+++ + SPG Sbjct: 23 IILIMSSSRGSGQKFALSDKVGVIEVLGTITDSKAIVDQLIDFGQNHAVKAIVLRVDSPG 82 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G + I+ + ++ KPV+ + +AAS GY IS +N I A ++ GSIGV+ + Sbjct: 83 GGVGPSQEIYDEVVRLTALKPVVVSMGSVAASGGYYISAPANRIFANSGTITGSIGVIME 142 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + V +DK+G+ +KS K S + + ++Q ++D + FV VSE R Sbjct: 143 FTNVIALMDKVGLKTNVIKSGDHKDIGSSVRAMTDQEKALLQSLIDDVHDQFVTAVSEGR 202 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 ++ D+ L+DGRI+TG +A++ GL+D +GG + L + + PK Sbjct: 203 HLEKDQVFKLADGRIFTGRQAQQQGLVDDLGGLQAAIHYAGELAGIEGTPDVLYPAEPKP 262 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 DL + IS + ++ +T QGL +W Sbjct: 263 ----DLIDYFISRTASEIERVILKTDTQGLQLLW 292 >gi|148251723|ref|YP_001236308.1| S49 family peptidase [Bradyrhizobium sp. BTAi1] gi|146403896|gb|ABQ32402.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Bradyrhizobium sp. BTAi1] Length = 326 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 90/308 (29%), Positives = 155/308 (50%), Gaps = 20/308 (6%) Query: 5 LKKIKTRYVMLSLV-----TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIER 59 K R V + + + + S +AR+ I G I E +E +ER Sbjct: 16 RKLTFWRVVAVLIAIAALSAIGLAMSPRGRTALSTSGSIARVNIEGLIRSDHERVEALER 75 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119 + + SA A+IV ++SPGG+ E ++ ++ ++K +KP++ V +AAS GY+ + A++ Sbjct: 76 L-ENSSAEAVIVHINSPGGTTAGSEQLYDSLVRLKAKKPLVVVVEGLAASGGYIGAIAAD 134 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 IVA ++SLVGSIGVLFQYP V L +GV ++ VKSSP+KA P+ + +P+A + Sbjct: 135 HIVAQQSSLVGSIGVLFQYPNVSELLKTIGVKVEEVKSSPLKAAPNGYEPTSPEARAALD 194 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 +V SY WF LV + R + ++DGR++TG +A ++ LID +G ++ L A Sbjct: 195 ALVKDSYAWFRGLVKDRRGMDDALLEKVADGRVFTGRQAIELKLIDELGDEKTAVAWLVA 254 Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL--------------EDTIPLMKQTKVQ 285 + ++D+ + + S +L + + + + Sbjct: 255 NKNVKKDLPVRDYKLVPRFGDLTFLRTATSLVLNAVGLSGIAHQIEQAGVVQAVDRLGLD 314 Query: 286 GLWAVWNP 293 G+ A+W P Sbjct: 315 GMLALWTP 322 >gi|323136115|ref|ZP_08071198.1| signal peptide peptidase SppA, 36K type [Methylocystis sp. ATCC 49242] gi|322399206|gb|EFY01725.1| signal peptide peptidase SppA, 36K type [Methylocystis sp. ATCC 49242] Length = 323 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 87/279 (31%), Positives = 146/279 (52%), Gaps = 11/279 (3%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 FS + +PH+AR++++G I ++ I+ I++I + A AL++++ SPGG+ E Sbjct: 40 FSDGDSADKLTPHIARLSLQGMITGDRDTIDLIKKIGDSNQARALLLTIESPGGTTTGSE 99 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 ++ +++V +KPV+ V +AAS Y+ + A++ IVA SLVGSIGVLFQ+P Sbjct: 100 KLYEELRRVSEKKPVVAVVGTLAASGAYIAALAADEIVARGNSLVGSIGVLFQFPNFYKL 159 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 LD GV ++ VKSSP+KA P+ + + A + +V SY WF LV E RN+ ++ Sbjct: 160 LDSWGVKVEEVKSSPLKATPNGYEPTSEAAKAAIASLVSDSYAWFKNLVKERRNLSDEEL 219 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 +SDGR++T + + L+D +GG+ E L ++DW + +L Sbjct: 220 AKVSDGRVFTARQGLPLKLVDKIGGEREAVAWLETNKNIAKDLPVRDWKKKTSLERLNLV 279 Query: 265 NLSI-----------SSLLEDTIPLMKQTKVQGLWAVWN 292 + + LE + + GL A+W Sbjct: 280 ESAAKMARAVGFDSFAGALEQVARAERGGSLDGLLAIWQ 318 >gi|227820608|ref|YP_002824578.1| signal peptide peptidase S49, SppA [Sinorhizobium fredii NGR234] gi|227339607|gb|ACP23825.1| signal peptide peptidase S49, SppA [Sinorhizobium fredii NGR234] Length = 319 Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 121/296 (40%), Positives = 186/296 (62%), Gaps = 10/296 (3%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66 + +++ + + W+ E HVAR+ + G I+D +EL+ER+ERI+ + SA Sbjct: 20 RWTAAAILVLGGFALIAFSGWTEVSERAREHVARVTVSGVIQDDRELVERLERIADNKSA 79 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 ALIV++SSPGG+ Y GE +++AI+KV +KPV+++V +AASAGY+I+ A + IVA ET Sbjct: 80 KALIVTISSPGGTTYGGEVLYKAIRKVAAKKPVVSDVRTLAASAGYMIALAGDRIVAGET 139 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 S+ GSIGV+FQYP VK +DK+GVS++S+KS P+KAEPSPF +P+A M+Q ++D SY Sbjct: 140 SITGSIGVIFQYPQVKQLMDKVGVSLESIKSRPLKAEPSPFHPPSPEARAMIQTMIDDSY 199 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 +WFV LV+E R +P + L L+DGRI+TG +A + L+D +GG +E+ L V + + Sbjct: 200 NWFVDLVAERRKLPRPEALALADGRIFTGRQALQGKLVDTIGGDDEIRAFLADRKVSKDL 259 Query: 247 RKIKDWNPPKNYWFCDLKNLS--ISSLLEDTIPLMKQTK--------VQGLWAVWN 292 + P ++ F +S + L D P M + + GL +VW Sbjct: 260 PVVDWEAPGGSFPFGLSTVVSNWLKLLGYDAFPAMNGLEKIGGDKLFLDGLVSVWQ 315 >gi|323702606|ref|ZP_08114268.1| signal peptide peptidase SppA, 36K type [Desulfotomaculum nigrificans DSM 574] gi|323532425|gb|EGB22302.1| signal peptide peptidase SppA, 36K type [Desulfotomaculum nigrificans DSM 574] Length = 312 Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 132/303 (43%), Gaps = 19/303 (6%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV-----EDNSPHVARIAIRGQIEDS---------- 50 K + + L L++L V I I G I S Sbjct: 4 KLVVGLVIGLVLISLAAAIAIKGDTKIMAGKASTGEKVGVIHIEGTIVSSAPGGFGAGGV 63 Query: 51 ---QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEM 106 E++ ++ + A+I+ L++ GGS + I R +++++ K V+ + EM Sbjct: 64 AAADEIVANLKEARENPEIKAVILRLNTGGGSVVGSDEIGREVERLRRSGKKVVAVMGEM 123 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 AAS GY I+C ++ IVA + GSIGV+ Q +K +K+GV +++ K+ P K + Sbjct: 124 AASGGYWIACKADKIVANPGTFTGSIGVIMQVTKMKELYNKIGVDVETFKTGPHKDMGAT 183 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 ++ P+ ++ Q +V SY F+ +V+E R + + L+DGR++TG +AK +GL+D Sbjct: 184 GRDITPEERRIFQGLVQDSYDDFINVVAEGRKMDPARVRQLADGRVYTGKQAKALGLVDE 243 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 +G + + L + ++ + N+ L L + Sbjct: 244 LGDFTDAVKLTARLANIKGEPELVEIGRRDNFLGDLLGGLQNQGKILPLPLEGLLLMPDP 303 Query: 287 LWA 289 + Sbjct: 304 ALS 306 >gi|307267146|ref|ZP_07548655.1| signal peptide peptidase SppA, 36K type [Thermoanaerobacter wiegelii Rt8.B1] gi|326390690|ref|ZP_08212244.1| signal peptide peptidase SppA, 36K type [Thermoanaerobacter ethanolicus JW 200] gi|306917831|gb|EFN48096.1| signal peptide peptidase SppA, 36K type [Thermoanaerobacter wiegelii Rt8.B1] gi|325993227|gb|EGD51665.1| signal peptide peptidase SppA, 36K type [Thermoanaerobacter ethanolicus JW 200] Length = 304 Score = 159 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 87/297 (29%), Positives = 150/297 (50%), Gaps = 16/297 (5%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQ---------ELI 54 I +++L + T+ F + S + I I G I ++ + + Sbjct: 7 IGLIFIVLIISTVIASIFLTMPQENKSVPSVSNTIGVITIEGVIGETNILGIPQVTGDPV 66 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYL 113 E+I + D + A++V ++SPGGSA I+ ++++K K VI + + AAS GY+ Sbjct: 67 EQIRKAQEDSTVKAVVVKINSPGGSAAKSVEIYTELKRLKETGKKVIISMGDAAASGGYM 126 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 +C +IIVA ++ GSIGV+ QY + DKLG+ ++KS P K SP ++ P+ Sbjct: 127 AACGGDIIVANPATITGSIGVIMQYTNYEGLYDKLGLKEITIKSGPYKDMGSPTRDLTPE 186 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 +++Q V+D +Y FV +VSE R +P DK L+DGRI+TG +A KVGL+D +G + Sbjct: 187 EKKILQGVIDDTYEQFVEIVSEGRKMPIDKVKELADGRIFTGRQALKVGLVDKLGDFYDA 246 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 Q +K + P N + + S+L + +++ + W++ Sbjct: 247 VDIAAKEAGIQGKPVLKYYTTP-NPLSILFGSGAKSNLEGTGLEILRLLFIDK-WSL 301 >gi|308270374|emb|CBX26986.1| Putative protease slr0021 [uncultured Desulfobacterium sp.] Length = 297 Score = 159 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 76/271 (28%), Positives = 129/271 (47%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 F + + + L +V+ + V + I G I +S+E+I I++ Sbjct: 10 FSVLVFSSIFFATILGVSILVFLGTRDPDFNMGEKVGVVEISGIITESKEIIRNIKKYRE 69 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 DDS A+I+ + SPGG+ + IFR +K K +I + AAS GY I+ +N I+ Sbjct: 70 DDSIKAIILRIDSPGGAVGPSQEIFRETRKTIGIKKIIASMGTAAASGGYYIAAGTNGIM 129 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A ++ GSIGV+ + + L K+G+ VKS K SP ++ K +++Q V Sbjct: 130 ANPGTITGSIGVIIGFTNFEEILQKIGLYSVVVKSGEYKDIGSPVRKMTEKEKKLLQTFV 189 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 D+++ FV VS+ RN+ K ++DGRI+TG AK +GL+D +G E+ + LG Sbjct: 190 DNTHMQFVDAVSKGRNMDIAKVKAIADGRIFTGEMAKNLGLVDRLGNLEDAIEWAGRLGG 249 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273 + + + S ++ Sbjct: 250 IKGKISAVYSKKSDSSFLDYFVESSAKKIVS 280 >gi|225849949|ref|YP_002730183.1| signal peptide peptidase SppA, 36K type [Persephonella marina EX-H1] gi|225644848|gb|ACO03034.1| signal peptide peptidase SppA, 36K type [Persephonella marina EX-H1] Length = 275 Score = 159 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 79/269 (29%), Positives = 144/269 (53%), Gaps = 5/269 (1%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63 + KKI V+ ++ + +FS+ +P +A I I G I D I+ IE D Sbjct: 1 MKKKIAIGVVLFLIIIYLISFFSYR-----ATPKIAIIEIHGVISDFYSHIQNIESAESD 55 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 DS A+++S+ SPGG+ A + I+RAI++++ +KPV+ + +AAS GY IS +++I A Sbjct: 56 DSIKAVVISVDSPGGTVGAAQEIYRAIERLRTKKPVVVSMGNVAASGGYYISAPASVIYA 115 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 ++ GSIGV+ Q+ + LDKLG+ ++++KS K P ++P+ ++++D + Sbjct: 116 NPGTITGSIGVIIQHMDLSRVLDKLGIKVENIKSGKNKDILYPNKSLSPEQKKLIEDTIK 175 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 Y F+ + R I D+ +DGRI++G +AKK+ L+D +G ++ L Sbjct: 176 DVYDQFLEAIVRYRPITKDQLRPYADGRIFSGRQAKKIKLVDKLGNIQDAVNEARKLAGL 235 Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 + + + L N ++S++ Sbjct: 236 EDRHVVIIKLGKRKNILEKLLNSDMNSII 264 >gi|154246163|ref|YP_001417121.1| signal peptide peptidase SppA, 36K type [Xanthobacter autotrophicus Py2] gi|154160248|gb|ABS67464.1| signal peptide peptidase SppA, 36K type [Xanthobacter autotrophicus Py2] Length = 323 Score = 159 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 90/279 (32%), Positives = 152/279 (54%), Gaps = 14/279 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 V +SPHVAR+ I G I + + +E +E I R A A+I+S+ SPGG+ E +F Sbjct: 42 GDGVSASSPHVARVTIGGIIRNDRARVELLEEIGR-SRARAVILSIDSPGGTVTGSEQLF 100 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 A++++ +KPV+ V +AAS Y+ + ++ IVA +LVGS+GV++QYP V L Sbjct: 101 DALRRLSEKKPVVAVVEGIAASGAYIAALGADHIVARRNALVGSVGVIYQYPNVTELLKT 160 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 +GV+++ +KSSP+KA P+P++ P+A ++ +V SY WF LVSE R + DK + Sbjct: 161 VGVAMEDIKSSPLKASPNPYTPTTPEARAAVESLVKDSYAWFKGLVSERRKMSDDKLATV 220 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK-NYWFCDLKN- 265 +DGR++TG + + L+D +G + L K++ W + + F L Sbjct: 221 TDGRVFTGHQGLDLQLVDELGDERTARAWLAREKGVPENLKVRSWRTREVDSEFGWLLGA 280 Query: 266 -----------LSISSLLEDTIPLMKQTKVQGLWAVWNP 293 + L + +++ ++ GL A+W+P Sbjct: 281 ARGAVAALGFPQAAEFLTQTARGALERAQLDGLLALWHP 319 >gi|307942848|ref|ZP_07658193.1| proteinase IV protein [Roseibium sp. TrichSKD4] gi|307773644|gb|EFO32860.1| proteinase IV protein [Roseibium sp. TrichSKD4] Length = 335 Score = 159 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 109/298 (36%), Positives = 164/298 (55%), Gaps = 12/298 (4%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66 +I ++ + + Y S ++ H+ARI I G I D EL++RIERI D Sbjct: 22 RIAAFLILAIALISLIAYVSGAADASKKGSHIARIEIDGVITDDYELLQRIERIREHDPV 81 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 +IV+++SPGGS GEAI+ A++K+ KPV++E+ ASAGY+I+ A + +A Sbjct: 82 KGVIVAINSPGGSTTGGEAIYSALRKLAEDKPVVSEIRTEGASAGYMIAMAGDHTIARYN 141 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 S+ GSIGVLFQY K LD +GV++ +VKSS +KAEP +SE +P+A M+ VV SY Sbjct: 142 SITGSIGVLFQYGNFKGLLDTIGVNMDAVKSSDLKAEPDFYSEASPEAKAMLAKVVKDSY 201 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 WFV LV+E RN+ + L L+DG I++G A K+GLID +GG+E Q L + Sbjct: 202 DWFVDLVAERRNMDRNAALKLADGSIYSGYTAHKLGLIDAIGGEEVAIQWLESEKDLSKD 261 Query: 247 RKIKDWNPPK---NYWFCDLKNLSISSLLEDTIPLMKQTK---------VQGLWAVWN 292 + W P + F + S + + + ++ + GL +VW Sbjct: 262 LPVITWRPEQTENGLPFVGAISRSFGIGVAEGLVGEAKSAKGLIPRGLTLDGLVSVWQ 319 >gi|283853641|ref|ZP_06370875.1| signal peptide peptidase SppA, 36K type [Desulfovibrio sp. FW1012B] gi|283570974|gb|EFC19000.1| signal peptide peptidase SppA, 36K type [Desulfovibrio sp. FW1012B] Length = 311 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 70/285 (24%), Positives = 129/285 (45%), Gaps = 4/285 (1%) Query: 10 TRYVMLSLVTLTVVYFSWSSHVE----DNSPHVARIAIRGQIEDSQELIERIERISRDDS 65 +++ +T + + +AI G I D+ ++ I+++ +DDS Sbjct: 23 AAVILVIGITAAFGLLGHDEEGGRLLGAATSRIGVVAIEGPITDADAVVAFIKKLRKDDS 82 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 +I+ ++SPGG+ + ++ A++K+ KPV+ +AAS GY +C ++ I A Sbjct: 83 VKGVILRVNSPGGAFGPSQEMYMAVKKLGAAKPVVASFSSVAASGGYYAACPASRIFANR 142 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 ++ GSIGV+ Q+ + L KLGV +S+ + +K +PF + + ++ Sbjct: 143 GTITGSIGVMSQFANAQDLLQKLGVHFESLTTGKLKDAGTPFKPLTDDQRAYLAGLIADL 202 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 F V+ R + D ++DGR TGA AK +GL+D +GGQEE L Sbjct: 203 NQQFSGDVAAERKLGKDAIATIADGRAMTGARAKDLGLVDELGGQEEAVDYLKQQVGLTG 262 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + K+ F L + ++ L + + G A+ Sbjct: 263 DVPLYKGPKKKSGLFDKLTSALSLPDMKGLALLSLVSGLSGETAL 307 >gi|134301011|ref|YP_001114507.1| signal peptide peptidase SppA, 36K type [Desulfotomaculum reducens MI-1] gi|134053711|gb|ABO51682.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Desulfotomaculum reducens MI-1] Length = 313 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 76/307 (24%), Positives = 142/307 (46%), Gaps = 27/307 (8%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN------SPHVARIAIRGQIEDS------- 50 + KKI T V+ ++ V + + +A + I G I S Sbjct: 1 MRKKIITGIVIGVVLFSLAVAIALKGNGGKTAENTGVGEQIAVVHIEGTIMSSAPGGFGT 60 Query: 51 ------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEV 103 ++ ++ + A+I+ L++ GG+ + I R +++V+ K V+ + Sbjct: 61 AGVAAADRIVSELKEARENPEIKAVILKLNTGGGTVVGSDEIGREVERVRKSGKKVVAAM 120 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 EMAAS GY ISC ++ IVA + GSIGV+ Q +K +KLGV + ++K+ K Sbjct: 121 GEMAASGGYWISCKADKIVANPGTFTGSIGVIMQLTEMKDLYNKLGVEVNNIKTGAFKDM 180 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 + +++P+ Q+ Q +V+ SY F+++V+ R + + L+DGRI+TG +AK++GL Sbjct: 181 GASNKDLSPEERQIFQGLVNDSYEDFIQVVAAGRKMDPTQVRKLADGRIYTGKQAKQLGL 240 Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 +D +G E + L + ++ D + W L + + Sbjct: 241 VDELGDFNEAVRITANLAGIKGEPELVDMTGEQLLWQQLFGGLQGKN-------KILPIP 293 Query: 284 VQGLWAV 290 ++GL + Sbjct: 294 LEGLLLL 300 >gi|161618142|ref|YP_001592029.1| signal peptide peptidase SppA, 36K type [Brucella canis ATCC 23365] gi|254705333|ref|ZP_05167161.1| signal peptide peptidase SppA, 36K type [Brucella suis bv. 3 str. 686] gi|261756044|ref|ZP_05999753.1| signal peptide peptidase SppA [Brucella suis bv. 3 str. 686] gi|161334953|gb|ABX61258.1| signal peptide peptidase SppA, 36K type [Brucella canis ATCC 23365] gi|261745797|gb|EEY33723.1| signal peptide peptidase SppA [Brucella suis bv. 3 str. 686] Length = 327 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 104/281 (37%), Positives = 174/281 (61%), Gaps = 12/281 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 F + N PH+A++ I G I +++EL++R+++I+ DD+ +I+ L SPGG+ Sbjct: 36 FAFYSLRSAKFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLLDSPGGTTVG 95 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 GEAI+ A++K+ +KPV+T+V +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + Sbjct: 96 GEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 155 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LD LGV ++++KSSP+KAEP+ FS + +A M++ ++ SY WFV +V E R ++ Sbjct: 156 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRSMIMDSYDWFVGIVQERRAFTHE 215 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + L L++G ++TG +A LID +GG+ E L G+ + ++ +W P + Sbjct: 216 QALALANGAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPRL-EWKPVGSETGFS 274 Query: 263 LKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292 L++L I + ++ + + + GL +VW+ Sbjct: 275 LRDLIIHAGARLLGLPQEADGAIKEIVRDRIFLDGLLSVWH 315 >gi|163842424|ref|YP_001626828.1| signal peptide peptidase SppA, 36K type [Brucella suis ATCC 23445] gi|189023406|ref|YP_001934174.1| Clp protease [Brucella abortus S19] gi|254690458|ref|ZP_05153712.1| signal peptide peptidase SppA [Brucella abortus bv. 6 str. 870] gi|254694947|ref|ZP_05156775.1| signal peptide peptidase SppA [Brucella abortus bv. 3 str. Tulya] gi|254696578|ref|ZP_05158406.1| signal peptide peptidase SppA [Brucella abortus bv. 2 str. 86/8/59] gi|254707153|ref|ZP_05168981.1| signal peptide peptidase SppA [Brucella pinnipedialis M163/99/10] gi|254709303|ref|ZP_05171114.1| signal peptide peptidase SppA [Brucella pinnipedialis B2/94] gi|254713274|ref|ZP_05175085.1| signal peptide peptidase SppA [Brucella ceti M644/93/1] gi|254716373|ref|ZP_05178184.1| signal peptide peptidase SppA [Brucella ceti M13/05/1] gi|254731491|ref|ZP_05190069.1| signal peptide peptidase SppA [Brucella abortus bv. 4 str. 292] gi|256030826|ref|ZP_05444440.1| signal peptide peptidase SppA [Brucella pinnipedialis M292/94/1] gi|256060296|ref|ZP_05450469.1| signal peptide peptidase SppA [Brucella neotomae 5K33] gi|256258714|ref|ZP_05464250.1| signal peptide peptidase SppA [Brucella abortus bv. 9 str. C68] gi|260169730|ref|ZP_05756541.1| signal peptide peptidase SppA [Brucella sp. F5/99] gi|260546428|ref|ZP_05822168.1| clp protease [Brucella abortus NCTC 8038] gi|260756010|ref|ZP_05868358.1| signal peptide peptidase SppA [Brucella abortus bv. 6 str. 870] gi|260759234|ref|ZP_05871582.1| signal peptide peptidase SppA [Brucella abortus bv. 4 str. 292] gi|260760956|ref|ZP_05873299.1| signal peptide peptidase SppA [Brucella abortus bv. 2 str. 86/8/59] gi|260885030|ref|ZP_05896644.1| signal peptide peptidase SppA [Brucella abortus bv. 9 str. C68] gi|261215286|ref|ZP_05929567.1| signal peptide peptidase SppA [Brucella abortus bv. 3 str. Tulya] gi|261218155|ref|ZP_05932436.1| signal peptide peptidase SppA [Brucella ceti M13/05/1] gi|261314631|ref|ZP_05953828.1| signal peptide peptidase SppA [Brucella pinnipedialis M163/99/10] gi|261316812|ref|ZP_05956009.1| signal peptide peptidase SppA [Brucella pinnipedialis B2/94] gi|261320997|ref|ZP_05960194.1| signal peptide peptidase SppA [Brucella ceti M644/93/1] gi|261324268|ref|ZP_05963465.1| signal peptide peptidase SppA [Brucella neotomae 5K33] gi|261759268|ref|ZP_06002977.1| clp protease [Brucella sp. F5/99] gi|265987881|ref|ZP_06100438.1| signal peptide peptidase SppA [Brucella pinnipedialis M292/94/1] gi|163673147|gb|ABY37258.1| signal peptide peptidase SppA, 36K type [Brucella suis ATCC 23445] gi|189018978|gb|ACD71700.1| Clp protease [Brucella abortus S19] gi|260096535|gb|EEW80411.1| clp protease [Brucella abortus NCTC 8038] gi|260669552|gb|EEX56492.1| signal peptide peptidase SppA [Brucella abortus bv. 4 str. 292] gi|260671388|gb|EEX58209.1| signal peptide peptidase SppA [Brucella abortus bv. 2 str. 86/8/59] gi|260676118|gb|EEX62939.1| signal peptide peptidase SppA [Brucella abortus bv. 6 str. 870] gi|260874558|gb|EEX81627.1| signal peptide peptidase SppA [Brucella abortus bv. 9 str. C68] gi|260916893|gb|EEX83754.1| signal peptide peptidase SppA [Brucella abortus bv. 3 str. Tulya] gi|260923244|gb|EEX89812.1| signal peptide peptidase SppA [Brucella ceti M13/05/1] gi|261293687|gb|EEX97183.1| signal peptide peptidase SppA [Brucella ceti M644/93/1] gi|261296035|gb|EEX99531.1| signal peptide peptidase SppA [Brucella pinnipedialis B2/94] gi|261300248|gb|EEY03745.1| signal peptide peptidase SppA [Brucella neotomae 5K33] gi|261303657|gb|EEY07154.1| signal peptide peptidase SppA [Brucella pinnipedialis M163/99/10] gi|261739252|gb|EEY27248.1| clp protease [Brucella sp. F5/99] gi|264660078|gb|EEZ30339.1| signal peptide peptidase SppA [Brucella pinnipedialis M292/94/1] Length = 327 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 104/281 (37%), Positives = 174/281 (61%), Gaps = 12/281 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 F + N PH+A++ I G I +++EL++R+++I+ DD+ +I+ L SPGG+ Sbjct: 36 FAFYSLRSAKFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLLDSPGGTTVG 95 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 GEAI+ A++K+ +KPV+T+V +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + Sbjct: 96 GEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 155 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LD LGV ++++KSSP+KAEP+ FS + +A M++ ++ SY WFV +V E R ++ Sbjct: 156 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRSMIMDSYDWFVGIVQERRAFTHE 215 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + L L++G ++TG +A LID +GG+ E L G+ + ++ +W P + Sbjct: 216 QALALANGAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPRL-EWKPVGSETGFS 274 Query: 263 LKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292 L++L I + ++ + + + GL +VW+ Sbjct: 275 LRDLIIHAGARLLGLPQEADGAIKEIARDRIFLDGLLSVWH 315 >gi|306844422|ref|ZP_07477012.1| signal peptide peptidase SppA, 36K type [Brucella sp. BO1] gi|306275235|gb|EFM56985.1| signal peptide peptidase SppA, 36K type [Brucella sp. BO1] Length = 327 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 104/281 (37%), Positives = 176/281 (62%), Gaps = 12/281 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 F + N PH+A++ I G I +++EL++R+++I+ DD+ +I+ L SPGG+ Sbjct: 36 FAFYLLRGAKFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLLDSPGGTTVG 95 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 GEAI+ A++K+ +KPV+T+V +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + Sbjct: 96 GEAIYDAVRKIAKKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 155 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LD LGV ++++KSSP+KAEP+ FS + +A M++ ++ SY WFV +V E R+ ++ Sbjct: 156 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRGMIMDSYDWFVGIVQERRSFTHE 215 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + L L++G ++TG +A LID +GG+ E L G+ + ++ +W P + Sbjct: 216 QALALANGAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPRL-EWKPVGSETGFS 274 Query: 263 LKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292 L++L I + ++ ++ + + GL +VW+ Sbjct: 275 LRDLIIHAGARLLGLPQEADGVIKEIARDRIFLDGLLSVWH 315 >gi|256112659|ref|ZP_05453580.1| signal peptide peptidase SppA, 36K type [Brucella melitensis bv. 3 str. Ether] gi|265994099|ref|ZP_06106656.1| signal peptide peptidase SppA [Brucella melitensis bv. 3 str. Ether] gi|262765080|gb|EEZ11001.1| signal peptide peptidase SppA [Brucella melitensis bv. 3 str. Ether] Length = 327 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 105/281 (37%), Positives = 174/281 (61%), Gaps = 12/281 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 F E N PH+A++ I G I +++EL++R+++I+ DD+ +I+ L SPGG+ Sbjct: 36 FAFYSLRSAEFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLLDSPGGTTVG 95 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 GEAI+ A++K+ +KPV+T+V +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + Sbjct: 96 GEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 155 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LD LGV ++++KSSP+KAEP+ FS + +A M++ ++ SY WFV +V E R ++ Sbjct: 156 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRSMIMDSYDWFVGIVQERRAFTHE 215 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + L L++G ++TG +A LID +GG+ E L G+ + ++ +W P + Sbjct: 216 QALALANGAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPRL-EWKPVGSETGFS 274 Query: 263 LKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292 L++L I + ++ + + + GL +VW+ Sbjct: 275 LRDLIIHAGARLLGLPQEADGAIKEIARDRIFLDGLLSVWH 315 >gi|225851687|ref|YP_002731920.1| signal peptide peptidase SppA, 36K type [Brucella melitensis ATCC 23457] gi|256045946|ref|ZP_05448818.1| signal peptide peptidase SppA, 36K type [Brucella melitensis bv. 1 str. Rev.1] gi|256264800|ref|ZP_05467332.1| clp protease [Brucella melitensis bv. 2 str. 63/9] gi|260563227|ref|ZP_05833713.1| clp protease [Brucella melitensis bv. 1 str. 16M] gi|265992356|ref|ZP_06104913.1| signal peptide peptidase SppA [Brucella melitensis bv. 1 str. Rev.1] gi|225640052|gb|ACN99965.1| signal peptide peptidase SppA, 36K type [Brucella melitensis ATCC 23457] gi|260153243|gb|EEW88335.1| clp protease [Brucella melitensis bv. 1 str. 16M] gi|263003422|gb|EEZ15715.1| signal peptide peptidase SppA [Brucella melitensis bv. 1 str. Rev.1] gi|263095211|gb|EEZ18880.1| clp protease [Brucella melitensis bv. 2 str. 63/9] gi|326408176|gb|ADZ65241.1| signal peptide peptidase SppA, 36K type [Brucella melitensis M28] Length = 327 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 105/281 (37%), Positives = 174/281 (61%), Gaps = 12/281 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 F E N PH+A++ I G I +++EL++R+++I+ DD+ +I+ L SPGG+ Sbjct: 36 FAFYSLRSAEFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLLDSPGGTTVG 95 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 GEAI+ A++K+ +KPV+T+V +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + Sbjct: 96 GEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 155 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LD LGV ++++KSSP+KAEP+ FS + +A M++ ++ SY WFV +V E R ++ Sbjct: 156 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRSMIMDSYDWFVGIVQERRAFTHE 215 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + L L++G ++TG +A LID +GG+ E L G+ + ++ +W P + Sbjct: 216 QALALANGAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPRL-EWKPVGSETGFS 274 Query: 263 LKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292 L++L I + ++ + + + GL +VW+ Sbjct: 275 LRDLIIHAGARLLGLPQEADGAIKEIARDRIFLDGLLSVWH 315 >gi|86356057|ref|YP_467949.1| proteinase IV protein [Rhizobium etli CFN 42] gi|86280159|gb|ABC89222.1| proteinase IV protein [Rhizobium etli CFN 42] Length = 316 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 114/300 (38%), Positives = 180/300 (60%), Gaps = 13/300 (4%) Query: 5 LKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 K R V ++L+ F SPH+A + I G I D EL+ER++++ Sbjct: 14 RKLGFWRIVAVALIVALGFAFYRFALGEAGTASPHIAHVTISGLIVDDDELLERLKKVET 73 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 + A ++S+SSPGG+ Y GE IF AI+ + +KPV+++V +AASAGY+I+ A + I+ Sbjct: 74 SNQVKAAVISISSPGGTTYGGEKIFNAIRAISAKKPVVSDVRTLAASAGYMIATAGDTII 133 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A ++S+ GSIGV+FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A M++++V Sbjct: 134 AGDSSITGSIGVIFQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKAMIRNMV 193 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 SY+WFV LV+E R +P ++ L L+DG I+TG +A + L+D +GG+ E+ L + GV Sbjct: 194 VDSYNWFVDLVAERRKLPREEVLKLADGTIYTGRQALQAKLVDTIGGEAEIRAYLQSRGV 253 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ----------TKVQGLWAVWN 292 D + + DW+ N F +S + L++ + GL +VW Sbjct: 254 DADLPMV-DWDKKSNTPFLLAGAVSRLVTILGYDDLIRGQDINGILPPKLLLDGLLSVWQ 312 >gi|120601287|ref|YP_965687.1| signal peptide peptidase SppA, 36K type [Desulfovibrio vulgaris DP4] gi|120561516|gb|ABM27260.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Desulfovibrio vulgaris DP4] Length = 296 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 69/275 (25%), Positives = 136/275 (49%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 F+ + + T + + P + + I G I D+++ +E + +++ Sbjct: 15 FIFGFLLIMVAVALFTGATATFRHLTDAGSFGGPRIGIVRIEGMIGDARKTLEWMRKLAE 74 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D + ++V + SPGG+ + + A++++ KPV+ + +AAS G ++S + IV Sbjct: 75 DRTVRGVLVRVDSPGGAVAPSQELHDAVKRLAADKPVVVSMGSLAASGGLMVSTGATRIV 134 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A ++ GSIGV + P V+ +DKLGV+ +++ S +K SPF ++ Q ++ Sbjct: 135 ANPATITGSIGVKMEMPNVQGLMDKLGVARQTLVSGDLKDAGSPFRAMSEAERAYFQSII 194 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 Y FV +++E RNIP +K +DGRI TG++A ++GL+D +G + L AL Sbjct: 195 MEMYGQFVSMIAEDRNIPVEKVRSFADGRILTGSQALELGLVDKLGSEAAAMDVLLALVD 254 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 + + + P + W ++ ++ + Sbjct: 255 LKGEKPVFIEPPKERSWVREVLESALGIAPPQNMG 289 >gi|23501065|ref|NP_697192.1| signal peptide peptidase SppA [Brucella suis 1330] gi|62289130|ref|YP_220923.1| signal peptide peptidase SppA [Brucella abortus bv. 1 str. 9-941] gi|82699069|ref|YP_413643.1| Clp protease [Brucella melitensis biovar Abortus 2308] gi|148560143|ref|YP_001258187.1| signal peptide peptidase SppA [Brucella ovis ATCC 25840] gi|225626693|ref|ZP_03784732.1| signal peptide peptidase SppA, 36K type [Brucella ceti str. Cudo] gi|237814624|ref|ZP_04593622.1| signal peptide peptidase SppA, 36K type [Brucella abortus str. 2308 A] gi|256368618|ref|YP_003106124.1| signal peptide peptidase SppA [Brucella microti CCM 4915] gi|297247546|ref|ZP_06931264.1| protease IV [Brucella abortus bv. 5 str. B3196] gi|23346932|gb|AAN29107.1| signal peptide peptidase SppA [Brucella suis 1330] gi|62195262|gb|AAX73562.1| SppA, signal peptide peptidase SppA [Brucella abortus bv. 1 str. 9-941] gi|82615170|emb|CAJ10109.1| Clp protease:Peptidase U7:Signal peptide peptidase, SppA 36 kDa type [Brucella melitensis biovar Abortus 2308] gi|148371400|gb|ABQ61379.1| signal peptide peptidase SppA [Brucella ovis ATCC 25840] gi|225618350|gb|EEH15393.1| signal peptide peptidase SppA, 36K type [Brucella ceti str. Cudo] gi|237789461|gb|EEP63671.1| signal peptide peptidase SppA, 36K type [Brucella abortus str. 2308 A] gi|255998776|gb|ACU47175.1| signal peptide peptidase SppA [Brucella microti CCM 4915] gi|297174715|gb|EFH34062.1| protease IV [Brucella abortus bv. 5 str. B3196] Length = 331 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 104/281 (37%), Positives = 174/281 (61%), Gaps = 12/281 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 F + N PH+A++ I G I +++EL++R+++I+ DD+ +I+ L SPGG+ Sbjct: 40 FAFYSLRSAKFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLLDSPGGTTVG 99 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 GEAI+ A++K+ +KPV+T+V +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + Sbjct: 100 GEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 159 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LD LGV ++++KSSP+KAEP+ FS + +A M++ ++ SY WFV +V E R ++ Sbjct: 160 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRSMIMDSYDWFVGIVQERRAFTHE 219 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + L L++G ++TG +A LID +GG+ E L G+ + ++ +W P + Sbjct: 220 QALALANGAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPRL-EWKPVGSETGFS 278 Query: 263 LKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292 L++L I + ++ + + + GL +VW+ Sbjct: 279 LRDLIIHAGARLLGLPQEADGAIKEIARDRIFLDGLLSVWH 319 >gi|326537889|gb|ADZ86104.1| signal peptide peptidase SppA, 36K type [Brucella melitensis M5-90] Length = 331 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 105/281 (37%), Positives = 174/281 (61%), Gaps = 12/281 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 F E N PH+A++ I G I +++EL++R+++I+ DD+ +I+ L SPGG+ Sbjct: 40 FAFYSLRSAEFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLLDSPGGTTVG 99 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 GEAI+ A++K+ +KPV+T+V +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + Sbjct: 100 GEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 159 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LD LGV ++++KSSP+KAEP+ FS + +A M++ ++ SY WFV +V E R ++ Sbjct: 160 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRSMIMDSYDWFVGIVQERRAFTHE 219 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + L L++G ++TG +A LID +GG+ E L G+ + ++ +W P + Sbjct: 220 QALALANGAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPRL-EWKPVGSETGFS 278 Query: 263 LKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292 L++L I + ++ + + + GL +VW+ Sbjct: 279 LRDLIIHAGARLLGLPQEADGAIKEIARDRIFLDGLLSVWH 319 >gi|306842559|ref|ZP_07475210.1| signal peptide peptidase SppA, 36K type [Brucella sp. BO2] gi|306287415|gb|EFM58895.1| signal peptide peptidase SppA, 36K type [Brucella sp. BO2] Length = 327 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 106/281 (37%), Positives = 177/281 (62%), Gaps = 12/281 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 F + N PH+A++ I G I +++EL++R++RI+ DD+ +I+ L SPGG+ Sbjct: 36 FAFYSLRGAKFNQPHIAKVRIEGTIFENEELLKRLDRIAGDDAVKGVILLLDSPGGTTVG 95 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 GEAI+ A++K+ +KPV+T+V +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + Sbjct: 96 GEAIYDAVRKIAKKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 155 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LD LGV ++++KSSP+KAEP+ FS + +A M++D++ SY WFV +V E R+ ++ Sbjct: 156 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRDMIMDSYDWFVGIVQERRSFTHE 215 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + L L++G ++TG +A LID +GG+ E L G+ + ++ +W P + Sbjct: 216 QALALANGAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPRL-EWKPAGSETGFS 274 Query: 263 LKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292 L++L I + ++ ++ + + GL +VW+ Sbjct: 275 LRDLIIHAGARLLGLPQEADGVIKEIARDRIFLDGLLSVWH 315 >gi|148264332|ref|YP_001231038.1| signal peptide peptidase SppA, 36K type [Geobacter uraniireducens Rf4] gi|146397832|gb|ABQ26465.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Geobacter uraniireducens Rf4] Length = 298 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 69/272 (25%), Positives = 137/272 (50%), Gaps = 10/272 (3%) Query: 7 KIKTRYVMLSLVTLTVVYFSWS----------SHVEDNSPHVARIAIRGQIEDSQELIER 56 KIK L++V L ++F S + + ++G I DSQE +++ Sbjct: 2 KIKWLLFGLAVVMLIFIFFVASLYIATTITGEKTDFVGKEGIGLVEVKGIILDSQETVKQ 61 Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116 + ++++ A+++ + SPGG + I+ A++K+ +K V+ + +AAS GY I+ Sbjct: 62 LFDFKKNENVKAVVLRIESPGGVVGPSQEIYDAVKKLALKKKVVVSMGSVAASGGYYIAA 121 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 + I A ++ GSIGVL ++ ++ +DK+G+ ++K+ K SP ++ + Sbjct: 122 PATKIFANPGTITGSIGVLMKFSNIEGLMDKIGMKAFTIKTGKYKDVGSPVRTMSVEDKA 181 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 M+Q V+DS++ FV+ V+E R +P ++ L+DGRI++G +A + L+D +G ++ + Sbjct: 182 MLQGVIDSTHGQFVKAVAEGRKLPLEQVKTLADGRIYSGEQALALKLVDNLGTMQDAIEE 241 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 L + + K L + Sbjct: 242 AGKLAGIKGEPHVITPPKKKKVLLDILMEETA 273 >gi|222084667|ref|YP_002543196.1| proteinase IV protein [Agrobacterium radiobacter K84] gi|221722115|gb|ACM25271.1| proteinase IV protein [Agrobacterium radiobacter K84] Length = 318 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 115/295 (38%), Positives = 176/295 (59%), Gaps = 16/295 (5%) Query: 11 RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALI 70 ++L + + F + + P +AR+AI G I+D EL+ER+++I +D ALI Sbjct: 23 AVLLLVGLGFALYRFFAADLPDTRGPQIARVAISGLIQDDSELLERLKKIKDNDQVKALI 82 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 VS+SS GG+ Y GE IF+AI+ V +KPV++++ +AASAGY+I+ A + IVA +TS+ G Sbjct: 83 VSISSTGGTTYGGERIFKAIRAVAAKKPVVSDIRTVAASAGYMIATAGDDIVAGDTSITG 142 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+FQYP K LDKLGVS++ +KSSPMKAEPSPF + A M++++V SY WFV Sbjct: 143 SIGVIFQYPQAKDLLDKLGVSLEDIKSSPMKAEPSPFHPPSEDAKNMIRNMVMDSYGWFV 202 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 LV++ R +P ++ L L+DG I+TG +A + LID +GG++E+ L V++ + I Sbjct: 203 DLVADRRKLPREEVLKLADGSIFTGRQALQNKLIDTLGGEDEIRAYLDTRKVNKDLP-IV 261 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIP-------------LMKQTKVQGLWAVWN 292 DW +S L + + ++ + GL +VW Sbjct: 262 DWKAENKTSSFFWPG--AASWLLNLFGYDDFVKGEGFQKMMTEKLFLDGLLSVWQ 314 >gi|254700963|ref|ZP_05162791.1| signal peptide peptidase SppA [Brucella suis bv. 5 str. 513] gi|261751481|ref|ZP_05995190.1| signal peptide peptidase SppA [Brucella suis bv. 5 str. 513] gi|261741234|gb|EEY29160.1| signal peptide peptidase SppA [Brucella suis bv. 5 str. 513] Length = 327 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 104/281 (37%), Positives = 173/281 (61%), Gaps = 12/281 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 F + N PH+A++ I G I +++EL++R+++I+ DD+ +I+ L SPGG+ Sbjct: 36 FAFYSLRSAKFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLLDSPGGTTVG 95 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 GEAI+ A++K+ +KPV+T+V +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + Sbjct: 96 GEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 155 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LD LGV ++++KSSP+KAEP+ FS + +A M++ ++ SY WFV +V E R ++ Sbjct: 156 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRSMIMDSYDWFVGIVQERRAFTHE 215 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + L L++G ++TG +A LID +GG+ E L G+ + + +W P + Sbjct: 216 QALALANGAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPHL-EWKPVGSETGFS 274 Query: 263 LKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292 L++L I + ++ + + + GL +VW+ Sbjct: 275 LRDLIIHAGARLLGLPQEADGAIKEIARDRIFLDGLLSVWH 315 >gi|296116410|ref|ZP_06835024.1| signal peptide peptidase SppA, 36K type [Gluconacetobacter hansenii ATCC 23769] gi|295977003|gb|EFG83767.1| signal peptide peptidase SppA, 36K type [Gluconacetobacter hansenii ATCC 23769] Length = 314 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 84/290 (28%), Positives = 151/290 (52%), Gaps = 7/290 (2%) Query: 11 RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISRDDSATAL 69 M + L + D H+ R+ I G + D+ + + I R + + + Sbjct: 25 AVAMFACGLLAISGRGIWGARGDGRDHLVRLRIDGVVGSDTTDTLALIRRARSNPAVKGM 84 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 ++ +++PGG+ GE + AI + +KPV + +AASAGY+I+ + + A ++L Sbjct: 85 LLDINTPGGAVTGGETLHDAIAEFARQKPVAVSMGSLAASAGYMIAVPAQRLFAHHSTLT 144 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ Q P V LDK+GV + + S PMK +PS ++P+ +M+Q V+ Y F Sbjct: 145 GSIGVIMQAPDVSGLLDKVGVRVDQLVSGPMKGQPSAVQPLSPQGREMLQGVIADLYDMF 204 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V +V++ R++P +K L L+DGR +TG++A +GL+D +GG+EE + L + Sbjct: 205 VTMVAQGRHLPREKVLELADGRPYTGSQALSLGLVDQIGGEEEAKEWLIRTLHLSETVDV 264 Query: 250 KDWNPPKNYWFCDLKNLSISSLL----EDTIPLMKQTK--VQGLWAVWNP 293 +D P ++ +++L S + D + + + + G A+W P Sbjct: 265 EDMKPRPSFHLDWMRHLLGSVMGIVAESDRLDGLFRPGGDLDGAVAIWKP 314 >gi|288817557|ref|YP_003431904.1| signal peptide peptidase [Hydrogenobacter thermophilus TK-6] gi|288786956|dbj|BAI68703.1| signal peptide peptidase [Hydrogenobacter thermophilus TK-6] gi|308751159|gb|ADO44642.1| signal peptide peptidase SppA, 36K type [Hydrogenobacter thermophilus TK-6] Length = 278 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 75/272 (27%), Positives = 143/272 (52%), Gaps = 5/272 (1%) Query: 11 RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALI 70 R++++ ++ ++V+ +A + + G I D++ +I++IE+ +DDS AL+ Sbjct: 3 RFILVLILLVSVMVIGSLLSRIPVGNRIAVLKVEGIIIDAEPVIKKIEKAKKDDSIKALV 62 Query: 71 VSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + + SPGGS A + I+RA+++ ++KP++ + +AAS GY IS ++ I A ++ Sbjct: 63 LRVDSPGGSVGASQEIYRALERFKDSKKPLVVSMGNVAASGGYYISVPADYIYANPGTIT 122 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ ++ + L +LGV ++K+ K SPF E+ + + ++ +D +Y F Sbjct: 123 GSIGVIIEHIDYRELLSRLGVKATAIKTGKFKDTLSPFRELTDEEREYLKKTIDDAYGQF 182 Query: 190 VRLVSESR--NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 + + + R I D+ ++DGRI TG A+KVGL+D +G E+ L + R Sbjct: 183 LSSILKYRSKKISEDELRSIADGRIMTGLMAQKVGLVDGLGNIEDAIDKAKELAGVKEAR 242 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 + + + L + S + P M Sbjct: 243 --VFYMEERKSFLRRLLGAKLPSFDLNYYPTM 272 >gi|116250187|ref|YP_766025.1| peptidase [Rhizobium leguminosarum bv. viciae 3841] gi|115254835|emb|CAK05909.1| putative peptidase [Rhizobium leguminosarum bv. viciae 3841] Length = 327 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 117/300 (39%), Positives = 182/300 (60%), Gaps = 13/300 (4%) Query: 5 LKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 K R + ++L+ F PH+A + I G I D EL+ER++++ Sbjct: 25 RKLGFWRLIAVALIVALGFAFYRFALGDAGTQRPHIAHVTISGLIVDDDELLERLKKVET 84 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D A ++S+SSPGG+ Y GE IF+AI+ + +KPV+++V +AASAGY+I+ A + I+ Sbjct: 85 SDQVKAAVISISSPGGTTYGGEKIFKAIRAISAKKPVVSDVRTLAASAGYMIATAGDTII 144 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A ++S+ GSIGV+FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A M++++V Sbjct: 145 AGDSSITGSIGVIFQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKTMIRNMV 204 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 SY+WFV LV++ R +P D+ L L+DG I+TG +A KV L+D +GG+ E+ L + GV Sbjct: 205 VDSYNWFVDLVADRRKLPRDEVLKLADGTIYTGRQALKVKLVDAIGGEAEIRAYLTSRGV 264 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK----------QTKVQGLWAVWN 292 D + + DW+ N F +S + LMK + + GL +VW Sbjct: 265 DSDLPMV-DWDKKSNTPFLLAGAVSRLITIFGYDDLMKTQDINGILPPKLLLDGLLSVWQ 323 >gi|220922181|ref|YP_002497482.1| signal peptide peptidase SppA, 36K type [Methylobacterium nodulans ORS 2060] gi|219946787|gb|ACL57179.1| signal peptide peptidase SppA, 36K type [Methylobacterium nodulans ORS 2060] Length = 321 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 99/297 (33%), Positives = 159/297 (53%), Gaps = 13/297 (4%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVEDN-----SPHVARIAIRGQIEDSQELIERIERISRD 63 R V + + + W + +P +ARI+I G I S++ E ++R+ Sbjct: 20 FWRVVGIGALIVAAGAVGWRAAGARGPFPAITPQIARISIDGFIAGSEKTRELMKRVGDS 79 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 + + +IVS++SPGG+ E +FR ++++ +KPV+ V AAS Y+ + A++ IVA Sbjct: 80 SAVSGVIVSINSPGGTTTGSEELFRNLRQLAEKKPVVAFVDGTAASGAYITALAADHIVA 139 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 ETSLVGSIGVLFQYP + LDK+GV ++ VKSSP+KAEPS F +P+ +Q +V Sbjct: 140 RETSLVGSIGVLFQYPDLSGLLDKVGVRVEQVKSSPLKAEPSGFHPTSPEGRAALQAIVG 199 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 +Y WF LV+E R + + +SDGR+++G + ++ L+D G + + L Sbjct: 200 DTYVWFKNLVAERRKLTPAELGAVSDGRVFSGRQGVELKLVDETGSERQAVAWLERERKV 259 Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ-------GLWAVWNP 293 I+DW P + F S+ LE+ +++T GL A+W P Sbjct: 260 AKDLPIRDWKPRSDRTFNLFSAASL-LGLEEVAGRLRRTTEDAAALAQGGLLALWRP 315 >gi|121535672|ref|ZP_01667477.1| signal peptide peptidase SppA, 36K type [Thermosinus carboxydivorans Nor1] gi|121305776|gb|EAX46713.1| signal peptide peptidase SppA, 36K type [Thermosinus carboxydivorans Nor1] Length = 308 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 74/285 (25%), Positives = 138/285 (48%), Gaps = 16/285 (5%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------QEL 53 + V++SLV + + VA I I G I ++ Sbjct: 8 YVIAAVVLVSLVGAAFIIPGLKTKGAAAQGKVAVIYIDGVIIGGRGQSALLAEYGGTDDI 67 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGY 112 + ++ D + A+++ ++SPGGSA A + + ++K++ K V+T + ++AAS GY Sbjct: 68 MRQLHEARDDAAVRAVVLRINSPGGSAPASQEVGEEVKKLRAAGKIVVTSMGDVAASGGY 127 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 I+ ++ I A ++ GSIGV Y + K+G+ + +KS P K SP + Sbjct: 128 WIAALTDKIYANPATMTGSIGVYIPYANWEELYRKIGIRQEKIKSGPHKDILSPERSMTG 187 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 + ++Q +VD Y+ FV +V+E R + + L+DGRI+TG +AK++GL+D +G + Sbjct: 188 EERAIIQAMVDDMYNQFVAVVAEGRKMDPARVRQLADGRIYTGNQAKELGLVDELGNLYD 247 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 L + ++ ++ K+ + L +L +LLE + Sbjct: 248 AIDGAARLAGIKGKPQVIEYG--KHSPWDYLLSLRAPTLLEKVLQ 290 >gi|209883626|ref|YP_002287483.1| protease IV [Oligotropha carboxidovorans OM5] gi|209871822|gb|ACI91618.1| protease IV [Oligotropha carboxidovorans OM5] Length = 326 Score = 157 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 89/302 (29%), Positives = 157/302 (51%), Gaps = 15/302 (4%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDS 65 + I V+ +++ LT + S +AR+ I G I + E + +ER+ + Sbjct: 22 RAISALVVIAAVIGLTAALAPSARQAITGSEAIARVKIEGLIRSNDERVAALERLGK-SK 80 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 A A+IV ++SPGG+ E +F A+ ++K +KP++ V +AAS GY+ + AS+ I+A + Sbjct: 81 AAAVIVHINSPGGTTAGAEQLFDALTRLKAKKPLVVVVEGLAASGGYIAALASDHIIAQQ 140 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 TSLVGSIGVLFQ+P L +GV ++ VKS+P+KA P+ + +P+A + +V S Sbjct: 141 TSLVGSIGVLFQFPNFSELLKTVGVKVEEVKSAPLKAAPNGYEPTSPEARAALDALVKDS 200 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 + WF LV R + V+SDGR++TG +A + LID +G ++ + L A + Sbjct: 201 FAWFKGLVKTRRQMDEAALQVVSDGRVFTGRQAVGLKLIDELGDEKTAVKWLQAQNKIKG 260 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDT--------------IPLMKQTKVQGLWAVW 291 ++D+ + + + L + ++ +++G+ A+W Sbjct: 261 ELPVRDYKLSPRFSDMTFLRTATEATLRALGLETFARIVGGSGVGGVAERLELEGMLALW 320 Query: 292 NP 293 P Sbjct: 321 QP 322 >gi|209547656|ref|YP_002279573.1| signal peptide peptidase SppA, 36K type [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533412|gb|ACI53347.1| signal peptide peptidase SppA, 36K type [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 316 Score = 157 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 117/300 (39%), Positives = 183/300 (61%), Gaps = 13/300 (4%) Query: 5 LKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 K R V ++L+ + F + PH+A + I G I D EL+ER++++ Sbjct: 14 RKLGFWRIVAVALIVALGLAFYSFAFGNAGTERPHIAHVTISGLIVDDDELLERLKKVET 73 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D A ++S+SSPGG+ Y GE IF+AI+ + +KPV+++V +AASAGY+I+ A + I+ Sbjct: 74 SDQVKAAVISISSPGGTTYGGEKIFKAIRAIAAKKPVVSDVRTLAASAGYMIATAGDTII 133 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A ++S+ GSIGV+FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A M++++V Sbjct: 134 AGDSSITGSIGVIFQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKAMIRNMV 193 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 SY+WFV LV++ R +P D+ L L+DG I+TG +A KV L+D +GG+ E+ L + GV Sbjct: 194 VDSYNWFVDLVADRRKLPRDEVLKLADGTIYTGRQALKVKLVDTIGGEPEIRAYLKSRGV 253 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ----------TKVQGLWAVWN 292 D + + DW+ N F +S + L+K + GL +VW Sbjct: 254 DADLPMV-DWDKKSNTPFLLAGAVSRLITIFGYDDLLKGQDINGILPPKLLLDGLLSVWQ 312 >gi|256158851|ref|ZP_05456708.1| Clp protease [Brucella ceti M490/95/1] gi|256254232|ref|ZP_05459768.1| Clp protease [Brucella ceti B1/94] gi|261221381|ref|ZP_05935662.1| signal peptide peptidase SppA [Brucella ceti B1/94] gi|265997342|ref|ZP_06109899.1| signal peptide peptidase SppA [Brucella ceti M490/95/1] gi|260919965|gb|EEX86618.1| signal peptide peptidase SppA [Brucella ceti B1/94] gi|262551810|gb|EEZ07800.1| signal peptide peptidase SppA [Brucella ceti M490/95/1] Length = 327 Score = 157 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 104/281 (37%), Positives = 174/281 (61%), Gaps = 12/281 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 F + N PH+A++ I G I +++EL++R+++I+ DD+ +I+ L SPGG+ Sbjct: 36 FAFYSLRSAKFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLLDSPGGTTVG 95 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 GEAI+ A++K+ +KPV+T+V +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + Sbjct: 96 GEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 155 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LD LGV ++++KSSP+KAEP+ FS + +A M++ ++ SY WFV +V E R ++ Sbjct: 156 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRSMIMDSYDWFVGIVQERRAFTHE 215 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + L L++G ++TG +A LID +GG+ E L G+ + ++ +W P + Sbjct: 216 QALALANGAVFTGRQALDKKLIDSLGGEAEAVAWLQTKGLSDKLPRL-EWKPVGSETGFS 274 Query: 263 LKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292 L++L I + ++ + + + GL +VW+ Sbjct: 275 LRDLIIHAGARLLGLPQEADGAIKEIARDRIFLDGLLSVWH 315 >gi|251772979|gb|EES53536.1| Peptidase S49 (SppA) [Leptospirillum ferrodiazotrophum] Length = 296 Score = 157 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 73/294 (24%), Positives = 136/294 (46%), Gaps = 14/294 (4%) Query: 4 VLKKIKTRYVMLSLVTLTVVY------FSWSSHVEDNSPHVARIAIRGQIEDSQELIERI 57 + KKI + ++ +V + F S + + I G I S++ I +I Sbjct: 2 LFKKIFRAFFVIVVVLGILFVLGRGAAFFSRSVPIVGGAEIGVVRISGVILSSRKPIRQI 61 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISC 116 ++RD A+++ + SPGG+ + I+ + K + KPVI + + AS Y I+ Sbjct: 62 RALARDPRVKAILLRIDSPGGAVVPSQDIYEEVMKARKSGKPVIASIGTVGASGAYYIAS 121 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 A + I+A+ SL GSIGV+ + + + K+GV + +KS +K SPF + P+ Sbjct: 122 ACDRIIASPGSLTGSIGVIMELAQFEDLMKKIGVQSEVMKSGSLKDAGSPFRPMTPEEKA 181 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 +Q V+D + F+R V++ R++ L+DGR++TGA A L+D +G + Sbjct: 182 YLQSVLDEMHRQFIRDVAKGRHLQVSAIEPLADGRVFTGASAIGNHLVDSLGDYNDALDE 241 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + ++ + P+ + + + + L E + G W+V Sbjct: 242 AAKMAHISGKPVVRRF--PEKSFLDKMVSSQVGHLWE-----TLGKESFGFWSV 288 >gi|218528184|ref|YP_002419000.1| signal peptide peptidase SppA, 36K type [Methylobacterium chloromethanicum CM4] gi|218520487|gb|ACK81072.1| signal peptide peptidase SppA, 36K type [Methylobacterium chloromethanicum CM4] Length = 321 Score = 157 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 95/272 (34%), Positives = 150/272 (55%), Gaps = 9/272 (3%) Query: 31 VEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 +ARI+I G I S+ + IER+ ++ +++S+SSPGG+ E ++R + Sbjct: 48 FPATENQIARISIGGFIAGSESTRKLIERVGESNAVKGVVISISSPGGTTTGSEELYRNL 107 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 + + +KP++ V AAS Y+ + A++ IVA ET+LVGSIGVLFQYP V LDK+GV Sbjct: 108 RALAAKKPMVAFVDGTAASGAYITAIAADHIVARETALVGSIGVLFQYPDVSGLLDKVGV 167 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 ++SVKSSP+KAEPS FS +P+A + +V +Y WF LV+E R + + ++DG Sbjct: 168 KVESVKSSPLKAEPSGFSPTSPEARAALSSIVLDTYGWFKGLVAERRGMDESQIAAVADG 227 Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270 R+++G ++ + L+D +GG+ + L +KDW P + F L + + Sbjct: 228 RVFSGRQSLPLKLVDELGGERQAVAWLEKEKKVPEKLPVKDWKPKADGGFKLWSTLGLGA 287 Query: 271 LLEDTIPLMKQTKV---------QGLWAVWNP 293 L L + + GL AVW P Sbjct: 288 DLLGLEGLASRLRAVEDEAAGLSGGLLAVWRP 319 >gi|115522478|ref|YP_779389.1| signal peptide peptidase SppA, 36K type [Rhodopseudomonas palustris BisA53] gi|115516425|gb|ABJ04409.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49 [Rhodopseudomonas palustris BisA53] Length = 324 Score = 157 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 87/279 (31%), Positives = 148/279 (53%), Gaps = 11/279 (3%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 S + + +S +AR+ I G I Q+ +E ER+ + SA A++V ++SPGG+ E Sbjct: 42 SSGTMSLAGSSGSIARVKIDGLIRSDQDRVEAFERLEK-SSAAAVVVHINSPGGTTAGSE 100 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 ++ A+ ++K +KP++ V +AAS GY+ + AS+ I+A ++SLVGSIGVLFQYP Sbjct: 101 QLYDALMRLKAKKPLVVVVEGLAASGGYIAALASDQIIARQSSLVGSIGVLFQYPNFSEL 160 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + +GV ++ VKSSP+KA P+ F +P+A + +V SY WF LV + R + + Sbjct: 161 MKTVGVKVEEVKSSPLKASPNGFEPTSPEARAALDSLVKDSYAWFRGLVKDRRQMDDSQL 220 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 ++DGR++TG +A + L+D +G ++ L A + ++D+ Sbjct: 221 EKVADGRVFTGRQAVGLKLVDQLGDEKTAVAWLVAQKKVKPDLPVRDYKLEPRLGDLTFL 280 Query: 265 NLSISSLLEDT----------IPLMKQTKVQGLWAVWNP 293 + S L + Q + G+ A+W P Sbjct: 281 RSAASLGLSAVGLDAAAQLLAQAGIDQFALDGMLALWRP 319 >gi|189425554|ref|YP_001952731.1| signal peptide peptidase SppA, 36K type [Geobacter lovleyi SZ] gi|189421813|gb|ACD96211.1| signal peptide peptidase SppA, 36K type [Geobacter lovleyi SZ] Length = 295 Score = 157 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 68/263 (25%), Positives = 130/263 (49%), Gaps = 1/263 (0%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 + FS + P V + ++G I DS E I ++ ++ DS A+++ + SPGG Sbjct: 30 LLFSDKEKGFVSGPGVGLVEVKGMIVDSTEPIRQLRHFAKKDSVKAVVLRIDSPGGVVGP 89 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + I+ ++K+ RK V+ + +AAS GY I+ +++I A ++ SIGVL ++ ++ Sbjct: 90 SQEIYEEVRKLAARKKVVVSMGSLAASGGYYIAAPASVIYANPGTITASIGVLIKFSNLE 149 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 KLGVS ++K+ K +P ++P+ M Q ++DS++ FV+ V+E R +P D Sbjct: 150 GLFGKLGVSSTTIKTGSFKDAGAPDRPLSPEDRAMFQALIDSTHEQFVKAVAEGRKLPVD 209 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + ++DGR+ +G +A+ + L+D +G + + L + P K + + Sbjct: 210 EVRRIADGRVLSGEQARALKLVDKLGNLPDAVEEAGRLAGISGEPALI-LPPKKKVNYLE 268 Query: 263 LKNLSISSLLEDTIPLMKQTKVQ 285 L + +Q Sbjct: 269 LLAEGAEEKFNGVLNKAVGRGLQ 291 >gi|299139693|ref|ZP_07032866.1| signal peptide peptidase SppA, 36K type [Acidobacterium sp. MP5ACTX8] gi|298598317|gb|EFI54482.1| signal peptide peptidase SppA, 36K type [Acidobacterium sp. MP5ACTX8] Length = 351 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 67/291 (23%), Positives = 129/291 (44%), Gaps = 9/291 (3%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNS----PHVARIAIRGQIEDSQELIERIERISRD 63 I ++ +T+ + S S + S +A I + G I D+ ++ +++++ D Sbjct: 64 IAAVVIIAICITVASLAKSLGSDADGTSSLDSDSIAVIDVSGVILDADKVDKQLQKFGDD 123 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNII 121 D+ A+I+ + SPGG A A + I+ + +++ K + + + AS Y I+ A + I Sbjct: 124 DNVKAIILHIDSPGGGAAASQEIYHEVLRIRQEKHKKIVASIESVGASGAYYIASACDKI 183 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 A S+VGS+GV+ ++ L + + + +K P ++ PK Q + Sbjct: 184 YANPASVVGSVGVIMEWTNYGDLLRWAKMKNVVIHAGELKDAGDPTRDLTPKEEAYFQSL 243 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 VD+ Y F+ V+ R++ DK L+ G++WTG +A +GLID GG Sbjct: 244 VDNMYVQFIHDVATGRHVGDDKIKPLATGQVWTGEQALPLGLIDAQGGFRIALIDTARSV 303 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + I K+ L + + + L+ + G + +W Sbjct: 304 GIKDEPHIVRPAKEKHGLAALLSD-GTDEIFPNPSKLLDRA--PGFYFLWK 351 >gi|241202814|ref|YP_002973910.1| signal peptide peptidase SppA, 36K type [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856704|gb|ACS54371.1| signal peptide peptidase SppA, 36K type [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 316 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 117/300 (39%), Positives = 183/300 (61%), Gaps = 13/300 (4%) Query: 5 LKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 K R + ++L+ F PH+A + I G I D EL+ER++++ Sbjct: 14 RKLGFWRVIAVALIVALGFAFYRFALGDAGTERPHIAHVTISGLIVDDDELLERLKKVEI 73 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D A+++S+SSPGG+ Y GE IF+AI+ + +KPV+++V +AASAGY+I+ A + I+ Sbjct: 74 SDQVKAVVISISSPGGTTYGGEKIFKAIRAISAKKPVVSDVRTLAASAGYMIATAGDTII 133 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A ++S+ GSIGV+FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A M++++V Sbjct: 134 AGDSSITGSIGVIFQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKAMIRNMV 193 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 SY+WFV LV++ R +P D+ L L+DG I+TG +A KV L+D +GG+ E+ L + GV Sbjct: 194 VDSYNWFVDLVADRRKLPRDEVLKLADGTIYTGRQALKVKLVDAIGGEAEIRAYLTSRGV 253 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK----------QTKVQGLWAVWN 292 D + + DW+ N F +S + LMK + + GL +VW Sbjct: 254 DSDLPMV-DWDKKSNTPFLLAGAVSRLITIFGYDDLMKTQDINGILPPKLLLDGLLSVWQ 312 >gi|241662586|ref|YP_002980946.1| peptidase S49 [Ralstonia pickettii 12D] gi|309781168|ref|ZP_07675905.1| signal peptide peptidase SppA, 36K type [Ralstonia sp. 5_7_47FAA] gi|240864613|gb|ACS62274.1| peptidase S49 [Ralstonia pickettii 12D] gi|308919989|gb|EFP65649.1| signal peptide peptidase SppA, 36K type [Ralstonia sp. 5_7_47FAA] Length = 364 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 73/291 (25%), Positives = 131/291 (45%), Gaps = 15/291 (5%) Query: 7 KIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60 +I R+V L L+ + + F S H A + + G+I ++ + ++ Sbjct: 78 RIFFRFVALGLIGVLIYAFASLEGETVSTGRHTAIVTLEGEIAANTNASAENINASLQAA 137 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCA 117 DD+ +I+ ++SPGGS I I+++ + P+ V EM AS GY ++ A Sbjct: 138 FADDNTVGVILKINSPGGSPVQAGMINDEIRRLRAKYKKIPLYVVVEEMCASGGYYVAAA 197 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 ++ I + S+VGSIGVL +DK+GV + + + K PFS V+P+ Q Sbjct: 198 ADKIYVDKASIVGSIGVLMDGFGFTGLMDKVGVERRLLTAGSNKGMLDPFSPVSPQQKQY 257 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 Q+++D + F+ +V + R L G WTGA+A +GL D +G + V +S+ Sbjct: 258 AQEMLDQVHQQFIDVVKQGRGNRLKDDPTLFTGLFWTGAKAVDLGLADAIGSSDFVARSV 317 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + D+ +N+ + L + L +++ L Sbjct: 318 IK------APDVVDYTVKENFASRVARKLGTAMGAGAVKALATTGQLKLLM 362 >gi|240136833|ref|YP_002961300.1| putative peptidase [Methylobacterium extorquens AM1] gi|254558708|ref|YP_003065803.1| peptidase [Methylobacterium extorquens DM4] gi|240006797|gb|ACS38023.1| putative peptidase [Methylobacterium extorquens AM1] gi|254265986|emb|CAX21736.1| putative peptidase [Methylobacterium extorquens DM4] Length = 321 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 95/272 (34%), Positives = 149/272 (54%), Gaps = 9/272 (3%) Query: 31 VEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 +ARI+I G I S + IER+ ++ +++S+SSPGG+ E ++R + Sbjct: 48 FPATENQIARISIGGFIAGSDSTRKLIERVGESNAVKGVVISISSPGGTTTGSEELYRNL 107 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 + + +KP++ V AAS Y+ + A++ IVA ET+LVGSIGVLFQYP V LDK+GV Sbjct: 108 RALAAKKPMVAFVDGTAASGAYITAIAADHIVARETALVGSIGVLFQYPDVSGLLDKVGV 167 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 ++SVKSSP+KAEPS FS +P+A + +V +Y WF LV+E R + + ++DG Sbjct: 168 KVESVKSSPLKAEPSGFSPTSPEARAALSSIVLDTYGWFKGLVAERRGMDESQIAAVADG 227 Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270 R+++G ++ + L+D +GG+ + L +KDW P + F L + + Sbjct: 228 RVFSGRQSLPLKLVDELGGERQAVAWLEKEKKVPEKLPVKDWKPKADGGFKLWSTLGLGA 287 Query: 271 LLEDTIPLMKQTKV---------QGLWAVWNP 293 L L + + GL AVW P Sbjct: 288 DLLGLEGLASRLRAVEDEAAGLSGGLLAVWRP 319 >gi|46581551|ref|YP_012359.1| signal peptide peptidase SppA, 36K type [Desulfovibrio vulgaris str. Hildenborough] gi|46450973|gb|AAS97619.1| signal peptide peptidase SppA, 36K type [Desulfovibrio vulgaris str. Hildenborough] gi|311235195|gb|ADP88049.1| signal peptide peptidase SppA, 36K type [Desulfovibrio vulgaris RCH1] Length = 296 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 68/275 (24%), Positives = 135/275 (49%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 F+ + + T + + P + + I G I D ++ +E + +++ Sbjct: 15 FIFGFLLIMVAVALFTGATATFRHLTDAGSFGGPRIGIVRIEGMIGDVRKTLEWMRKLAE 74 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D + ++V + SPGG+ + + A++++ KPV+ + +AAS G ++S + IV Sbjct: 75 DRTVRGVLVRVDSPGGAVAPSQELHDAVKRLAADKPVVVSMGSLAASGGLMVSTGATRIV 134 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A ++ GSIGV + P V+ +DK+GV+ +++ S +K SPF ++ Q ++ Sbjct: 135 ANPATITGSIGVKMEMPNVQGLMDKIGVARQTLVSGDLKDAGSPFRAMSEAERAYFQSII 194 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 Y FV +++E RNIP +K +DGRI TG++A ++GL+D +G + L AL Sbjct: 195 MEMYGQFVSMIAEDRNIPVEKVRSFADGRILTGSQALELGLVDKLGSEAAAMDVLLALVD 254 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 + + + P + W ++ ++ + Sbjct: 255 LKGEKPVFIEPPKERSWVREVLESALGIAPPQNMG 289 >gi|187928004|ref|YP_001898491.1| peptidase S49 [Ralstonia pickettii 12J] gi|187724894|gb|ACD26059.1| peptidase S49 [Ralstonia pickettii 12J] Length = 364 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 73/291 (25%), Positives = 131/291 (45%), Gaps = 15/291 (5%) Query: 7 KIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60 +I R+V L L+ + + F S H A + + G+I ++ + ++ Sbjct: 78 RIFFRFVALGLIGVLIYAFASLEGETVSTGRHTAIVTLEGEIAANTNASAENINASLQAA 137 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCA 117 DD+ +I+ ++SPGGS I I+++ + P+ V EM AS GY ++ A Sbjct: 138 FADDNTVGVILKINSPGGSPVQAGMINDEIRRLRAKYKKIPLYVVVEEMCASGGYYVAAA 197 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 ++ I + S+VGSIGVL +DK+GV + + + K PFS V+P+ Q Sbjct: 198 ADRIYVDKASIVGSIGVLMDGFGFTGLMDKVGVERRLLTAGSNKGMLDPFSPVSPQQKQY 257 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 Q+++D + F+ +V + R L G WTGA+A +GL D +G + V +S+ Sbjct: 258 AQEMLDQVHQQFIDVVKQGRGNRLKDDPTLFTGLFWTGAKAVDLGLADAIGSSDLVARSV 317 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + D+ +N+ + L + L +++ L Sbjct: 318 IK------APDVVDYTVKENFASRVARKLGTAMGAGAVKALATTGQLKLLM 362 >gi|302035808|ref|YP_003796130.1| peptidase S49, putative signal peptide peptidase SppA [Candidatus Nitrospira defluvii] gi|300603872|emb|CBK40204.1| Peptidase S49, putative signal peptide peptidase SppA [Candidatus Nitrospira defluvii] Length = 299 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 78/288 (27%), Positives = 147/288 (51%), Gaps = 6/288 (2%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63 +L++I +++ L ++ + VA I I G I D+Q I ++ S + Sbjct: 15 LLRRIFWA-IVIGGGALILLNALLPDLDFSSQDRVALIRIEGVILDAQATISELKHYSEN 73 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNII 121 A+++ + SPGG + I A+++VKN+ K VI + +AAS GY I+ A++ I Sbjct: 74 PLVKAIVLRIDSPGGGVVPSQEIHDAVKRVKNKSNKAVIASMGTVAASGGYYIAAATDRI 133 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 +A +L GSIGV+ + + + K+GV +KS K SP +++ + +++Q V Sbjct: 134 IANPGTLTGSIGVIMEMANFEGLMKKVGVEGVVIKSGRFKDVGSPLRKMSDEERKLLQSV 193 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 +D +H F++ V++ R++ L+DGRI+TG +AK+ L+D +G ++ + Sbjct: 194 MDDVHHQFIQAVADGRSLEVSDVEPLADGRIYTGRQAKEARLVDELGDLDDAIHIAADIA 253 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + K+ + P K + F D+ +S+ + L K++ L A Sbjct: 254 GMEGEPKVVE--PRKRFSFRDIIESRWASVFP-KLELNTGVKLKYLMA 298 >gi|330994449|ref|ZP_08318374.1| Putative signal peptide peptidase sppA [Gluconacetobacter sp. SXCC-1] gi|329758449|gb|EGG74968.1| Putative signal peptide peptidase sppA [Gluconacetobacter sp. SXCC-1] Length = 342 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 83/283 (29%), Positives = 147/283 (51%), Gaps = 2/283 (0%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-ELIERIERISRDDSATALI 70 ++ LSL +PH+ + ++G I + E +E + R D + L+ Sbjct: 59 WLFLSLPASWPSGVRPGGWTGHQAPHLVHLKVQGVIGADEHENVEALNRARDDAAVRGLL 118 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + ++SPGG+ GE + A+ RKPV+ + +AASAGY++S ++ I A ++L G Sbjct: 119 LEVNSPGGAVTGGEVLHDAVAAFARRKPVVVSMGSVAASAGYMVSTPASRIFANRSTLTG 178 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ + P V P LD++GV + + S PMK +PS ++P+ M+Q VV Y +FV Sbjct: 179 SIGVILESPDVSPLLDRVGVRVDQLVSGPMKGQPSVVKPLSPEGRAMLQGVVSDLYDFFV 238 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 +V++ R++P + L+DGR +TG +A +GL+D +G ++ + L + K+ Sbjct: 239 TVVAQDRHMPAGRVRELADGRPFTGQQALPLGLVDEIGNMDDARKWLVKKTILPDDAKVT 298 Query: 251 DWNPPK-NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 D P + L + +S + L + + + G A+W Sbjct: 299 DIGPAATRTRWQRLLSGILSVVPGAEFVLKESSALDGAVAIWK 341 >gi|163849634|ref|YP_001637677.1| signal peptide peptidase SppA, 36K type [Methylobacterium extorquens PA1] gi|163661239|gb|ABY28606.1| signal peptide peptidase SppA, 36K type [Methylobacterium extorquens PA1] Length = 321 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 95/272 (34%), Positives = 149/272 (54%), Gaps = 9/272 (3%) Query: 31 VEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 +ARI+I G I S + IER+ ++ +++S+SSPGG+ E ++R + Sbjct: 48 FPATENQIARISIGGFIAGSDSTRKLIERVGESNAVKGVVISISSPGGTTTGSEELYRNL 107 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 + + +KP++ V AAS Y+ + A++ IVA ET+LVGSIGVLFQYP V LDK+GV Sbjct: 108 RALAAKKPMVAFVDGTAASGAYITAIAADHIVARETALVGSIGVLFQYPDVSGLLDKVGV 167 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 ++SVKSSP+KAEPS FS +P+A + +V +Y WF LV+E R + + ++DG Sbjct: 168 KVESVKSSPLKAEPSGFSPTSPEARAALSSIVLDTYGWFKGLVAERRGMDESQIAAVADG 227 Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270 R+++G ++ + L+D +GG+ + L +KDW P + F L + + Sbjct: 228 RVFSGRQSLPLKLVDELGGERQAVAWLEKEKKVPEKLPVKDWKPKADGGFKLWSTLGLGA 287 Query: 271 LLEDTIPLMKQTKV---------QGLWAVWNP 293 L L + + GL AVW P Sbjct: 288 DLLGLDGLASRLRAVEDEAAGLSGGLLAVWRP 319 >gi|190890072|ref|YP_001976614.1| proteinase IV protein [Rhizobium etli CIAT 652] gi|190695351|gb|ACE89436.1| proteinase IV protein [Rhizobium etli CIAT 652] Length = 316 Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 117/300 (39%), Positives = 182/300 (60%), Gaps = 13/300 (4%) Query: 5 LKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 K R V ++LV + F PH+A + I G I D EL+ER++++ Sbjct: 14 RKLGFWRIVAVALVVALGLAFYGFAFGGAGTERPHIAHVTISGLIVDDDELLERLKKVET 73 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D A ++S+SSPGG+ + GE IF+AI+ + +KPV+++V +AASAGY+I+ A + I+ Sbjct: 74 SDQVKAAVISISSPGGTTFGGEKIFKAIRAISAKKPVVSDVRTLAASAGYMIATAGDTII 133 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A ++S+ GSIGV+FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A M++++V Sbjct: 134 AGDSSITGSIGVIFQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKAMIRNMV 193 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 SY+WFV LV++ R +P D+ L L+DG I+TG +A K+ LID +GG+ E+ L + GV Sbjct: 194 VDSYNWFVDLVADRRKLPRDEVLKLADGTIYTGRQALKMKLIDTIGGEPEIRAYLKSRGV 253 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ----------TKVQGLWAVWN 292 D + + DW+ N F +S + L+K + GL +VW Sbjct: 254 DTDLPMV-DWDKKSNTPFLLAGAVSRLITIFGYDDLVKGQDINGILPPKLLLDGLLSVWQ 312 >gi|327193444|gb|EGE60342.1| proteinase IV protein [Rhizobium etli CNPAF512] Length = 316 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 115/300 (38%), Positives = 182/300 (60%), Gaps = 13/300 (4%) Query: 5 LKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 K R V ++LV + F PH+A + I G I D EL+ER++++ Sbjct: 14 RKLGFWRIVAVALVVALGLAFYGFAFGGAGTERPHIAHVTISGLIVDDDELLERLKKVET 73 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D A ++S+SSPGG+ + GE IF+AI+ + +KPV+++V +AASAGY+I+ A + I+ Sbjct: 74 SDQVKAAVISISSPGGTTFGGEKIFKAIRAIAAKKPVVSDVRTLAASAGYMIATAGDTII 133 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A ++S+ GSIGV+FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A M++++V Sbjct: 134 AGDSSITGSIGVIFQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKAMIRNMV 193 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 SY+WFV LV++ R +P D+ L L+DG I+TG +A K+ L+D +GG+ E+ L + GV Sbjct: 194 VDSYNWFVDLVADRRKLPRDEVLKLADGTIYTGRQALKMKLVDTIGGEPEIRAYLKSRGV 253 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ----------TKVQGLWAVWN 292 + + + DW+ N F +S + L+K + GL +VW Sbjct: 254 NTDLPMV-DWDKKSNTPFLLAGAVSRLITIFGYDDLVKGQDINGILPPKLLLDGLLSVWQ 312 >gi|166368609|ref|YP_001660882.1| protease IV [Microcystis aeruginosa NIES-843] gi|166090982|dbj|BAG05690.1| protease IV [Microcystis aeruginosa NIES-843] Length = 604 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 72/284 (25%), Positives = 133/284 (46%), Gaps = 15/284 (5%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATA 68 ++L S D+S +A + G I +L + + ++ + A Sbjct: 298 ISLANYASSLDDEGGDSSDQIAIVYAEGTIVEGQGDRGEIGGDKLAKELRKLQGKEEVKA 357 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 +++ ++SPGGSA A E I R I+++ +KPVI + ++AAS GY I+ I A ++ Sbjct: 358 VVLRINSPGGSATASEVILREIKRLDAKKPVIISLGDVAASGGYWIAMGGQRIFADNDTI 417 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIGV ++ + G+ +VK+ + + NP+ +++ Q V+ Y Sbjct: 418 TGSIGVFGLLLNIQKIANNNGIDWDTVKTGQLADISTITRPKNPQELEIYQAAVNRFYDL 477 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 F+ V++ R + DK ++ GR+WTG +A K+GL+D +GG E Q Sbjct: 478 FIETVAKGRKLSPDKVRTVAQGRVWTGKDAVKIGLVDQIGGLEAAVQYAAKTAKLGDDWS 537 Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 +K++ +++ L S+LL+ +P + + L W Sbjct: 538 LKEYPRSQSWQEELL-----SNLLQTYLPPLTKNNHP-LTQEWQ 575 Score = 83.1 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 92/241 (38%), Gaps = 7/241 (2%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGE--AIFRAIQKVKNRKPVITEVHEM 106 + +++I IE+ + DDS L++ G + +A+ K + I Sbjct: 82 NLRQVIAAIEKAALDDSIVGLLLYGRGTVGEYGYATLTEVRQALAKFRQSGKKIIAYDVE 141 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 Y ++ + ++ + G+ Q + L+K GV ++ VK K P Sbjct: 142 WTEKEYYLASVAEKVIINPVGRMEINGLSSQQTFFADALEKYGVGVQVVKVGSFKGAVEP 201 Query: 167 F--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGL 223 + +++ + Q +Q ++D+ + + V++SRN+ + +SD I AKK G Sbjct: 202 YTRQDLSVQNRQQLQTLLDTIWSNYSATVAKSRNLTPQQVQTISDTQGILEATTAKKAGF 261 Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 +D V + V L + + + + SSL ++ Q Sbjct: 262 VDEVAYLDRVIALAKDLTGEAKNKT--NQEETSGSFSQISLANYASSLDDEGGDSSDQIA 319 Query: 284 V 284 + Sbjct: 320 I 320 >gi|296533548|ref|ZP_06896118.1| signal peptide peptidase SppA [Roseomonas cervicalis ATCC 49957] gi|296266118|gb|EFH12173.1| signal peptide peptidase SppA [Roseomonas cervicalis ATCC 49957] Length = 307 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 80/281 (28%), Positives = 147/281 (52%), Gaps = 5/281 (1%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVS 72 V+ + L + H+AR+ + G I D ++L E + +RD + +++S Sbjct: 28 VLTVVAVLGAGALLAGRGLPVAGGHLARLTVEGTISDDRKLTEAVLEAARDPAVRGILLS 87 Query: 73 LSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 + SPGG+ GE + A+++ + + KPV+ + M ASA Y+I+ + + A +++L GS Sbjct: 88 IDSPGGTVAGGEGLHAALRRFRDSGKPVVAVMRGMGASAAYMIAMPAQRVFARDSTLTGS 147 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IGV+ Q LD LG+ + + S +K EP+PF + P+ ++ V+ + FV Sbjct: 148 IGVILQSFEASRLLDTLGIRAEMLTSGALKGEPNPFRPLTPEGRAALEAVLRDLHEQFVT 207 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 +V+E RN+P ++ L+DGRI+TG +A ++ LID +GG+ E L A + ++D Sbjct: 208 IVAEGRNLPRERVAELADGRIYTGRQALELRLIDAIGGEPEARAWLAAEQDIPASTPVRD 267 Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 +P +S+ +L++ + + + G AVW Sbjct: 268 LDPRSA--AERALGVSLRALMKSVVS--EWLAIDGARAVWQ 304 >gi|90421920|ref|YP_530290.1| signal peptide peptidase SppA, 36K type [Rhodopseudomonas palustris BisB18] gi|90103934|gb|ABD85971.1| signal peptide peptidase SppA, 36K type [Rhodopseudomonas palustris BisB18] Length = 325 Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 85/281 (30%), Positives = 150/281 (53%), Gaps = 15/281 (5%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 S + S +AR+ I G I + +E +ER+ + +A A++V ++SPGG+ E + Sbjct: 42 PSGPLAGTSGAIARVKIDGLIRSDADRVEALERLEK-SAAAAVVVHINSPGGTTAGSEQL 100 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 + A+ ++K +KP++ + +AAS GY+ + AS+ IVA ++SLVGSIGVLFQ+P + Sbjct: 101 YDALVRLKAKKPLVVVIEGLAASGGYIAAIASDHIVAQQSSLVGSIGVLFQFPNFTELMK 160 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 +GV ++ VKSSP+KA P+ F +P+A ++ +V SY WF LV R + Sbjct: 161 TVGVKVEEVKSSPLKAAPNGFEPTSPEARAALESLVKDSYAWFRGLVKSRRGMDDQLLEK 220 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 ++DGR++TG +A + LID +G ++ L A ++ ++D+ + Sbjct: 221 VADGRVFTGRQAVDLKLIDQLGDEKTAIAWLVAEKKVKADLPVRDYKLTPRFGDLTFLRA 280 Query: 267 SISSLLEDT--------------IPLMKQTKVQGLWAVWNP 293 + S L+ + ++Q + G+ A+W P Sbjct: 281 ATSITLDALGLNAVARQIERAGVVQSVEQLGLDGMLALWRP 321 >gi|170740731|ref|YP_001769386.1| signal peptide peptidase SppA, 36K type [Methylobacterium sp. 4-46] gi|168195005|gb|ACA16952.1| signal peptide peptidase SppA, 36K type [Methylobacterium sp. 4-46] Length = 321 Score = 155 bits (390), Expect = 8e-36, Method: Composition-based stats. Identities = 96/287 (33%), Positives = 156/287 (54%), Gaps = 6/287 (2%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVS 72 +++++ + + +P +ARI + G I S + + ++R+ + + +IVS Sbjct: 29 LIVAVGAIGLRAAGSRGPFPAITPQIARITVDGFIAGSDKTRDLMKRVGDSSAVSGVIVS 88 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 ++SPGG+ E +FR ++++ +KPV+ V AAS Y+ + A++ IVA ETSLVGSI Sbjct: 89 INSPGGTTTGSEELFRNLRQLAEKKPVVAFVDGTAASGAYITALAADHIVARETSLVGSI 148 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GVLFQYP + LDK+GV ++ VKSSP+KAEPS F +P+A +Q +V +Y WF L Sbjct: 149 GVLFQYPDLSGLLDKVGVRVEEVKSSPLKAEPSGFHPTSPEARAALQAIVGDTYAWFKNL 208 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 V+E R + + +SDGR+++G + + L+D G +++ L I+DW Sbjct: 209 VAERRRMSEAELAAVSDGRVFSGRQGVALKLVDETGNEKQAVAWLERERHVTKDLPIRDW 268 Query: 253 NPPKNYWFCDLKNLS------ISSLLEDTIPLMKQTKVQGLWAVWNP 293 P + F L S +++ L T GL AVW P Sbjct: 269 KPRSDRSFDLLSAASLLGLEDVAAGLRRTSGEAAALAQGGLLAVWRP 315 >gi|260891981|ref|YP_003238078.1| signal peptide peptidase SppA, 36K type [Ammonifex degensii KC4] gi|260864122|gb|ACX51228.1| signal peptide peptidase SppA, 36K type [Ammonifex degensii KC4] Length = 296 Score = 155 bits (390), Expect = 8e-36, Method: Composition-based stats. Identities = 83/288 (28%), Positives = 140/288 (48%), Gaps = 19/288 (6%) Query: 11 RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------DSQELIERI 57 + LSLV V S V + I + G I D + +IE + Sbjct: 12 AVIFLSLVLAAVWGRSRERGVGLGEGKIGLIYLTGVIAGEGGASPLFGSTADVRGVIEAL 71 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISC 116 R D S A+++ + SPGGSA A + I A+++V+ K V+ + + AAS Y ++ Sbjct: 72 GRAEEDPSIKAVVLRIDSPGGSAAASQEISDAVRRVQKAGKKVVVSMGDTAASGAYWVAA 131 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 ++ IVA +++ GSIGV+F+ + KLG+ + +KS P K S + P+ Sbjct: 132 GADKIVALPSTITGSIGVIFETANLSGLYHKLGIQKEILKSGPFKDMGSESRPLTPEERA 191 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 ++Q +VD Y FV V++ R++P K L L+DGR++TG +AK++GL+D +G Q Sbjct: 192 ILQGMVDDIYQQFVDHVAQGRHLPRQKVLELADGRVFTGRQAKELGLVDELGDLHTAVQE 251 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 L + ++ + K WF + SLL +P ++ + Sbjct: 252 AAHLAGIKGKPEVVELG--KAAWFRRFFGGFLDSLL---LPRFQEGGL 294 >gi|298529709|ref|ZP_07017112.1| signal peptide peptidase SppA, 36K type [Desulfonatronospira thiodismutans ASO3-1] gi|298511145|gb|EFI35048.1| signal peptide peptidase SppA, 36K type [Desulfonatronospira thiodismutans ASO3-1] Length = 296 Score = 155 bits (390), Expect = 8e-36, Method: Composition-based stats. Identities = 70/277 (25%), Positives = 126/277 (45%), Gaps = 3/277 (1%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 + F I T V L + + P + + + G I DS+++++ I+ + Sbjct: 14 LIFGFMLIITAVVTFMLAMAVFNFLFFDGPKLRTQPKIGVVNVSGLITDSRDIVDWIQEL 73 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 DS +++ ++SPGG + +FRA++ + KPV+ + +AAS GY + + + Sbjct: 74 EEKDSVKGVLLRVNSPGGVVAPSQEVFRAVKDLAREKPVVASLGSVAASGGYYAASPAGV 133 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 IVA +L SIGV ++ L KLG+ + V S K + + + + Q Sbjct: 134 IVANPGTLTASIGVKVTLTNIQELLQKLGIEDQGVYSGEFKDAGTVSRPMTEEEREYFQG 193 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +VD + FV+ V+ +R++ + L+DGR TG +A + GL+D +GG+ E L Sbjct: 194 LVDDMHEQFVQDVALARDMDEQRVYDLADGRAMTGRQALEAGLVDELGGRSEALDILCEK 253 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 K + + L+ + L D IP Sbjct: 254 VQLPRDAKQLEGPEER---MSILRRILSEFSLGDNIP 287 >gi|260567208|ref|ZP_05837678.1| clp protease [Brucella suis bv. 4 str. 40] gi|260156726|gb|EEW91806.1| clp protease [Brucella suis bv. 4 str. 40] Length = 327 Score = 155 bits (390), Expect = 8e-36, Method: Composition-based stats. Identities = 103/281 (36%), Positives = 173/281 (61%), Gaps = 12/281 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 F + N PH+A++ I G I +++EL++R+++I+ DD+ +I+ L SPGG+ Sbjct: 36 FAFYSLRSAKFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLLDSPGGTTVG 95 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 GEAI+ A++K+ +KPV+T+V +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + Sbjct: 96 GEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 155 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LD LGV ++++KSSP+KAEP+ FS + +A M++ ++ SY WFV +V E R ++ Sbjct: 156 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRSMIMDSYDWFVGIVQERRAFTHE 215 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + L L++G ++TG +A LID +GG+ E L G+ + ++ +W + Sbjct: 216 QALALANGAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPRL-EWKLVGSETGFS 274 Query: 263 LKNLSISSLL------EDTIPLM-----KQTKVQGLWAVWN 292 L++L I + ++ + + + GL +VW+ Sbjct: 275 LRDLIIHAGARLLGLPQEADGAIKEIVRDRIFLDGLLSVWH 315 >gi|298505345|gb|ADI84068.1| peptidase, S49 family [Geobacter sulfurreducens KN400] Length = 293 Score = 155 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 61/277 (22%), Positives = 132/277 (47%), Gaps = 1/277 (0%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSAT 67 + ++ + + ++G I DSQE +++++ + + S Sbjct: 13 LVALIILFTFSVQMARILMGDMTAATIGDGIGYAEVKGPIIDSQETVKQLDDLRKKSSVK 72 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 A+++ + SPGG + I+ A++++ K V+ + +AAS GY ++ + +I A + Sbjct: 73 AVVLRVESPGGVIGPSQEIYAAVKRLAATKKVVVSMGSVAASGGYHVAVPAAVIYANPGT 132 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 + GSIGVL + ++ +DK+G+ ++KS K SP ++ + ++Q V+D+ + Sbjct: 133 ITGSIGVLMKLSNIEGLMDKVGLKAFTLKSGKFKDSGSPVRKLTEEERAVLQGVIDNLHD 192 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 FVR V+E R +P ++ L+DGR++TG +A ++ L+D +G + L + Sbjct: 193 QFVRAVAEGRQLPVEEVRRLADGRVYTGEQALRLKLVDRLGTLHDAVMEAGRLAGIEGEP 252 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + P K D+ ++ + ++ + Sbjct: 253 TLI-IPPKKRKLLRDMLFGEVAEAVRGSVRKEEGLSF 288 >gi|124515664|gb|EAY57173.1| Peptidase S49 (SppA) [Leptospirillum rubarum] gi|206602280|gb|EDZ38762.1| Peptidase S49 (SppA) [Leptospirillum sp. Group II '5-way CG'] Length = 295 Score = 155 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 75/284 (26%), Positives = 137/284 (48%), Gaps = 8/284 (2%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSAT 67 I L + + + I I G I S++ I +I ++ D Sbjct: 13 IFIAVTALIFLLGRAAGHFGRALPLVGGAEIGVIRINGVILHSEKTIRQIRTLASDPEVK 72 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAET 126 A+++ ++SPGG+ + I+ + K + + K V++ + + AS Y I+ AS+ I+A+ Sbjct: 73 AILLRINSPGGAVVPSQDIYEEVLKARKKGKIVVSSIGTVGASGAYYIASASDFIMASSG 132 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 SL GSIGV+ + VK LDK+GV + VKS MK SPF + M+ ++D+ + Sbjct: 133 SLTGSIGVIMELAEVKDLLDKIGVHSEVVKSGKMKDVGSPFRPMTADEKAYMKSLLDNIH 192 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 F+ VS+ R++ DK L+DGR++TG A + L+D +G + + + + I Sbjct: 193 QQFILAVSKGRHLSVDKIDPLADGRVFTGEMAFRYHLVDGIGDYRDALRKAATMAHLKVI 252 Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 I++++ L + +S+LL + + G W++ Sbjct: 253 PAIREFHKK--GVLNSLISSKVSTLLGGGLG-----ESTGFWSI 289 >gi|242280848|ref|YP_002992977.1| signal peptide peptidase SppA, 36K type [Desulfovibrio salexigens DSM 2638] gi|242123742|gb|ACS81438.1| signal peptide peptidase SppA, 36K type [Desulfovibrio salexigens DSM 2638] Length = 293 Score = 155 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 64/259 (24%), Positives = 135/259 (52%), Gaps = 1/259 (0%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVED-NSPHVARIAIRGQIEDSQELIERIERISRDDSA 66 +++++ L + V+ ++ + + ++G I +S ++ + + RDDS Sbjct: 16 FGFSLLLMAVALLWGAAAFFHGKVDLFSAGKIGVVNVQGTITNSLPTVKFLRDLRRDDSV 75 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 +++ ++SPGG+ + ++ A++++ KP++ +AAS GY + + I+A+ Sbjct: 76 KGVLLRVNSPGGTIAPSQELYHAVKRLAEVKPIVASFGTVAASGGYYAAAPATKIMASSG 135 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 S+ GSIGV +Y ++K+GV + S MKA SPF+E+ P+ + + ++ + Sbjct: 136 SITGSIGVKAEYANFHQLMEKIGVKPVIITSGKMKAAGSPFTELTPEQREYLTALIMDMH 195 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + FV V+ +R + ++ ++DGR TG EAK++GL+D +GG E+ L AL + Sbjct: 196 NQFVDDVASARKLDREQVEKIADGRAITGREAKELGLVDRIGGFEDSVTVLKALCNIEGD 255 Query: 247 RKIKDWNPPKNYWFCDLKN 265 K+ + + ++ Sbjct: 256 VKVIEGPEEEKPLLKEILG 274 >gi|296134407|ref|YP_003641654.1| signal peptide peptidase SppA, 36K type [Thermincola sp. JR] gi|296032985|gb|ADG83753.1| signal peptide peptidase SppA, 36K type [Thermincola potens JR] Length = 315 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 70/310 (22%), Positives = 147/310 (47%), Gaps = 23/310 (7%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVE------DNSPHVARIAIRGQIED-------- 49 + KK+ ++ + V+ + + + I+I G I Sbjct: 1 MQKKLVVGIILGICILSLVIALAVEPGEKPLISGPKYDNAIGLISIEGPITGGDVGGLFE 60 Query: 50 ----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVH 104 ++ ++E++ ++D S A+I+ ++SPGG+ A + I ++KV+ K V+ + Sbjct: 61 VSAGAESIMEQLREAAKDKSLKAVIIRINSPGGTVAASQEIGEEVEKVRKAGKKVVISMG 120 Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 ++AAS GY I+ + IVA ++ GSIGV+ + + +K+G++ +S+KS K Sbjct: 121 DVAASGGYWIAAKGDKIVANPGTVTGSIGVIMESLNMSDLYNKVGIADQSIKSGAHKDMG 180 Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLI 224 SP + + ++Q +VD ++ FV +V++ R + + L ++DGR++TG +AK +GL+ Sbjct: 181 SPSRPLTQEEKVILQSMVDDMFNQFVDVVAKGRRMKREDVLKIADGRVFTGRQAKSLGLV 240 Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL---EDTIPLMKQ 281 D +G + + L + ++ + P K+ W +S + E + + Sbjct: 241 DELGNYYDAVRLTAKLAGIKGEPEVVELKP-KDPWASFFGKAMLSFGIRDYEGILKAAET 299 Query: 282 TKVQGLWAVW 291 + +W Sbjct: 300 RDLPRYMLLW 309 >gi|289549221|ref|YP_003474209.1| signal peptide peptidase SppA, 36K type [Thermocrinis albus DSM 14484] gi|289182838|gb|ADC90082.1| signal peptide peptidase SppA, 36K type [Thermocrinis albus DSM 14484] Length = 282 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 77/278 (27%), Positives = 140/278 (50%), Gaps = 5/278 (1%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64 + + R ++ + ++ +A + + G I D Q ++ ++E+ D Sbjct: 1 MGRWIKRVLIFFGILFSLGMLGTFLARFPIGDRIAVVKVEGVITDPQAVVSKMEKARLDP 60 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVA 123 S AL++ + SPGGS A + I+R +++ + KPV+ + +AAS GY IS +N+I A Sbjct: 61 SVKALVLRVESPGGSVGASQEIYREVERFRQSGKPVVVSMGNVAASGGYYISAPANVIYA 120 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 ++ GSIGV+ Q+ V+ L+KLG+ ++K+ K SPF E+ P+ Q +Q++V+ Sbjct: 121 NPGTITGSIGVIIQHTDVQQLLEKLGIKTTAIKTGKFKDTLSPFRELTPEERQYLQNLVE 180 Query: 184 SSYHWFVRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 +Y F+ + R + ++DGRI TG +AK++GL+D +G ++ Q L Sbjct: 181 DAYSQFIEAILRYRKGKVQEDILRQIADGRILTGKQAKELGLVDELGDLQDAIQKAKELA 240 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 R + K + + + SL + PLM Sbjct: 241 RVPQAR--VFYMEDKKGFLKRMLEGKVPSLQQVWSPLM 276 >gi|17545763|ref|NP_519165.1| protease transmembrane protein [Ralstonia solanacearum GMI1000] gi|17428057|emb|CAD14746.1| putative protease transmembrane protein [Ralstonia solanacearum GMI1000] Length = 378 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 73/291 (25%), Positives = 127/291 (43%), Gaps = 15/291 (5%) Query: 7 KIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60 +I R+V L ++ + F S+ + H A + + G+I + + +E Sbjct: 92 RIFFRFVTLGIIGGLLYLFASFEGETVSSGRHTALVTLDGEIAANTNASADNINASLEAA 151 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCA 117 DD+ +I+ ++SPGGS I I++++ + I V EM AS GY ++ A Sbjct: 152 FADDNTAGVILKINSPGGSPVQAGMINDDIRRLRAKYKNIPLYVVVEEMCASGGYYVAAA 211 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 ++ I + S+VGSIGVL +DKLGV + + + K PFS V P+ Q Sbjct: 212 ADKIYVDKASIVGSIGVLMDGFGFTGLMDKLGVERRLLTAGTNKGMLDPFSPVAPQQRQF 271 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 Q ++D + F+ +V + R L G WTGA+A +GL D +GG + V + Sbjct: 272 AQAMLDEVHQQFIDVVKQGRGSRLKDDPQLFSGLFWTGAKAVDLGLADGIGGTDFVAR-- 329 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + D+ +N+ + + L +++ L Sbjct: 330 ----NIIKAPDLVDYTVKENFAERVARKFGTAMGAGAIKALAATGQLKLLM 376 >gi|194017284|ref|ZP_03055896.1| signal peptidase SppA [Bacillus pumilus ATCC 7061] gi|194011152|gb|EDW20722.1| signal peptidase SppA [Bacillus pumilus ATCC 7061] Length = 333 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 69/265 (26%), Positives = 131/265 (49%), Gaps = 17/265 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSS 75 + +A + I G I+D+ + ++ +E+ D S +++ ++S Sbjct: 51 EDGSGAGKIAVLEINGTIQDNGGASSLLGGEGYDHRAFLKELEKAKDDASVKGVLLRVNS 110 Query: 76 PGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 PGG Y I + +++VK +KP+ + MAAS GY +S + I A+ +L GS+GV Sbjct: 111 PGGGVYESAEIHKKLEEVKKAKKPIYVSMGSMAASGGYYVSTPAKKIFASPETLTGSLGV 170 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + Q D LG+ +++KS K SP ++ +MQ +VD+SY FV+++S Sbjct: 171 IMQSLNYSKLADNLGIKYETIKSGKFKDIMSPNRDMTKDERDIMQSMVDNSYEGFVKVIS 230 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 E R + ++DGR++ G +AK GL+D +G E+ +++ + ++ Sbjct: 231 EGRGMSKQDVKKIADGRVYDGTQAKSNGLVDELGYYEDAIKAMKKNEKGLKGATVVSYS- 289 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLM 279 +++ + L N+S S L + I + Sbjct: 290 -QSFGWNSLFNMSASKLFKSEIDFL 313 >gi|221633251|ref|YP_002522476.1| protease IV, signal peptide peptidase [Thermomicrobium roseum DSM 5159] gi|221155784|gb|ACM04911.1| protease IV, signal peptide peptidase [Thermomicrobium roseum DSM 5159] Length = 321 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 77/262 (29%), Positives = 135/262 (51%), Gaps = 14/262 (5%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------DSQELIERIERIS 61 L+L + S PHVA I +RG I ++ ++E++ER Sbjct: 25 LALTAGLGMLASGRLDRWLEQPHVAEIRVRGPIALRGGAGLLTGESASAERIVEQLERAR 84 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNI 120 ++ +A +++ + SPGG A I+ A+++V+ KPV+ + AAS GY IS ++ Sbjct: 85 QNPNARVVLLRVDSPGGGVNAAREIWAAVRRVQESGKPVVAFFEDTAASGGYYISAPADR 144 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 IVA ++ GSIGV+ P + +KLG+ ++ VKS K S + P+ +++ Sbjct: 145 IVAMPDTITGSIGVILIIPDLSGLYEKLGIRMQVVKSGTFKDMASSDRPLTPEERALLEQ 204 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V +Y FVR+V+E R +P ++ L+DGRI+TG +AK++GL+D +GG + L Sbjct: 205 LVHEAYDEFVRVVAEGRAMPPERVRELADGRIYTGRQAKELGLVDELGGYRDALAVAGQL 264 Query: 241 GVDQSIRKIKDWNPPKNYWFCD 262 + ++ + P +W Sbjct: 265 AGLGAEPAVRVYRPQPTFWESL 286 >gi|319789919|ref|YP_004151552.1| signal peptide peptidase SppA, 36K type [Thermovibrio ammonificans HB-1] gi|317114421|gb|ADU96911.1| signal peptide peptidase SppA, 36K type [Thermovibrio ammonificans HB-1] Length = 292 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 82/272 (30%), Positives = 147/272 (54%), Gaps = 6/272 (2%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDN-----SPHVARIAIRGQIEDSQELIERIER 59 +K++K +++L ++ V+ + + P VA + I G I S+ ++ ++R Sbjct: 1 MKRLKGIFLLLGVMAFVVLVMALFPKEMGSIEAAYGPKVAIVRIEGVISRSEPYLKLLDR 60 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119 + R+ S A+++ + SPGG A + I + +V RKPV+ + +AAS G +S + Sbjct: 61 VERNSSVKAVVLRVDSPGGVVGACQEIHDKVAEVARRKPVVVSMDSVAASGGLYVSVPAT 120 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 IVA ++ GSIGV+ Q V KLG+ +VKS K +PF + +P+ ++++Q Sbjct: 121 KIVANPGTITGSIGVIIQVLNVSQLAQKLGIEAVTVKSGRCKDLLNPFKKPDPECLKVVQ 180 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 +++D SY+ FV V++ R++P +K +DGRI+TG AK++GL+D +GG E+ + Sbjct: 181 NLIDDSYNQFVEAVAKGRHLPVEKVRSFADGRIFTGRRAKELGLVDYLGGIEKAVEVAKK 240 Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 LG K+ + P + +W S L Sbjct: 241 LGRCPGA-KVVEVKPKRGFWERIFGPAGESVL 271 >gi|237746014|ref|ZP_04576494.1| peptidase U7 family [Oxalobacter formigenes HOxBLS] gi|229377365|gb|EEO27456.1| peptidase U7 family [Oxalobacter formigenes HOxBLS] Length = 315 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 73/290 (25%), Positives = 130/290 (44%), Gaps = 14/290 (4%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIE 58 + K+ T ++++ L+ + PH A I IRG I + +I+ ++ Sbjct: 30 IFFKLVTLFLIIFLIVSVRNFSFSEGEGAPVQPHTAVIEIRGTIEATGNASASNIIKALD 89 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN---RKPVITEVHEMAASAGYLIS 115 R ++ AT +I+ ++SPGGS I+ I++++N KP+ V E+ AS GY I+ Sbjct: 90 RAYKEPMATGVILKINSPGGSPVQAGMIYDEIRRLRNTYPDKPLYVVVEELCASGGYYIA 149 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGV+ V +DKLG+ + + + K PFS P+ + Sbjct: 150 AAADKIYVDKASIVGSIGVMINGFGVTGLMDKLGIERRLLTAGEYKGFLDPFSPQTPQQI 209 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q Q +++ + F+ +V E R + + G ++ G EA K+GL D +G E V + Sbjct: 210 QYAQSMLNQIHQQFIEVVREGRGNRLKENREIYSGLVFLGPEAIKLGLADDLGTVESVAR 269 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 + + D+ + LK S + Sbjct: 270 DVIK------SPETVDYTEQEKLSDRVLKKFGASVGYGAAKAGFDWNPLP 313 >gi|27375852|ref|NP_767381.1| proteinase IV [Bradyrhizobium japonicum USDA 110] gi|27348990|dbj|BAC46006.1| proteinase IV [Bradyrhizobium japonicum USDA 110] Length = 326 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 84/271 (30%), Positives = 144/271 (53%), Gaps = 15/271 (5%) Query: 37 HVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 +AR+ I G I + + +ER+ + A A+IV ++SPGG+ E ++ ++ ++K + Sbjct: 53 SIARVQIDGLIRSDSDRTQALERL-ENSQAAAVIVHINSPGGTTAGSEQLYDSLVRLKAK 111 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 KP++ V +AAS GY+ + AS+ I+A ++SLVGSIGVLFQYP V L +GV ++ VK Sbjct: 112 KPLVVVVEGLAASGGYITAIASDHIIAQQSSLVGSIGVLFQYPNVTELLKTIGVKVEEVK 171 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216 SSP+KA P+ F +P+A + ++V SY WF LV E R + + ++DGR++TG Sbjct: 172 SSPLKAAPNGFEPTSPEARAALDELVKDSYAWFKGLVKERRGMDDTQLEKVADGRVFTGR 231 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT- 275 +A + LID +G ++ L + ++D+ + + + LE Sbjct: 232 QAIDLKLIDQIGDEKTAVTWLVEQKGVKKGLSVRDYKLQSRFGDLPFLKTAAAVTLEALG 291 Query: 276 -------------IPLMKQTKVQGLWAVWNP 293 + + + G+ A+W P Sbjct: 292 LGSIAHQIGQTGVAQAVDRFGMDGMLALWQP 322 >gi|154250604|ref|YP_001411428.1| signal peptide peptidase SppA, 36K type [Parvibaculum lavamentivorans DS-1] gi|154154554|gb|ABS61771.1| signal peptide peptidase SppA, 36K type [Parvibaculum lavamentivorans DS-1] Length = 314 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 87/276 (31%), Positives = 158/276 (57%), Gaps = 12/276 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 S + H+AR+ I G I + E ++++ D S +I+S+ SPGG+ EA++ Sbjct: 39 ESGIYLPRAHIARVTIDGVIVHDRYQNEMFKKLAEDSSVRGVILSIDSPGGTTTGAEALY 98 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 A++++ +KPV+ + +AAS GY+ + +++ IV+ ++ GSIGV+FQ+ ++ L Sbjct: 99 EAVRELAEKKPVVAVLGTVAASGGYIAALSADHIVSRGNTITGSIGVVFQWAQLEKLLGN 158 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 +GV ++ VKSSP+KAEPSPF NP+A+++ ++++DSSY WF+RLV+ R + ++ Sbjct: 159 IGVEVREVKSSPLKAEPSPFHTTNPEALKVTRELIDSSYDWFLRLVTIRRGLDEATARMV 218 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 DGR++TG +A + GL+D +GG++E L + ++D P Y + + + Sbjct: 219 GDGRVYTGWQAVENGLVDELGGEDEAIAWLAKEHKIDASLPVRDRTP--AYPDLGMASFT 276 Query: 268 ISSLLEDTIPLMK----------QTKVQGLWAVWNP 293 +L E + + + + GL +VW P Sbjct: 277 GKALGEAAVTAIDGLTGKTQQTKRLTLDGLTSVWQP 312 >gi|218440875|ref|YP_002379204.1| signal peptide peptidase SppA, 67K type [Cyanothece sp. PCC 7424] gi|218173603|gb|ACK72336.1| signal peptide peptidase SppA, 67K type [Cyanothece sp. PCC 7424] Length = 605 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 74/283 (26%), Positives = 139/283 (49%), Gaps = 14/283 (4%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLS 74 F + E S +A + G+I D + + + +I +D + A+++ ++ Sbjct: 304 GFLRENQNESASNQIAVVYAEGEIVDGQGAVSNIGGERFAKELRKIRQDPNVKAVVLRIN 363 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGGSA A + I R ++ +K +KPVI + +AAS GY I+ +N I A +++ GSIGV Sbjct: 364 SPGGSATASDIIGREVKLMKEKKPVIVSMGNVAASGGYWIATEANHIFAEPSTITGSIGV 423 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 V+ + G++ VK++ + + + + + Q V Y+ FV V+ Sbjct: 424 FGMLFNVQDIANNNGITWDVVKTAKLADLGTTTRPKTEQELAIYQRSVQQIYNLFVNKVA 483 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 +SRN+P K +++GR+W+G +AK++GL+D +GG E + +I+++ Sbjct: 484 QSRNLPESKVKQIAEGRVWSGEDAKQLGLVDEIGGLEAAILYAAKEAKLEKNWEIQEYPR 543 Query: 255 PKNYWFCDLKNLSISSLLEDTIP-----LMKQTKVQGLWAVWN 292 + + L+ L S + E P + K++ AV+ Sbjct: 544 RRTFESIILERLFTSKITESITPSPDSLTAEMLKLKEDLAVFQ 586 Score = 80.0 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 98/252 (38%), Gaps = 13/252 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGS--AYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 ++++ IE+ ++D A+ + + + ++K + I Sbjct: 84 RQVLGVIEKATKDAQIEAIFIDGRGIEADNGIATLTEVRQGLEKFRAAGKKIIFYDVDLN 143 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167 Y + ++ I+ ++ G+ Q ++ L+K G+ I+ ++ KA PF Sbjct: 144 EKSYYLGSVADEIILNPMGMMEFNGIGTQPLFLAGALEKYGIGIQVIRVGEFKAAVEPFI 203 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLID 225 ++P+ Q +++ + + V +SRN+ +K ++D + EA+K+GLID Sbjct: 204 RQTMSPENRLQTQVLLNDLWTNVLTTVGKSRNVTPNKLQAIADNQGMLMPTEAEKIGLID 263 Query: 226 VVGGQEEVWQSLYALGV--------DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 V +EV L L D+ + + + +N S S+ + Sbjct: 264 RVAYFDEVVTDLKTLTGKTSESENPDEKSFPQISVENYASGFLRENQNESASNQIAVVYA 323 Query: 278 LMKQTKVQGLWA 289 + QG + Sbjct: 324 EGEIVDGQGAVS 335 >gi|73668088|ref|YP_304103.1| signal peptide peptidase A [Methanosarcina barkeri str. Fusaro] gi|72395250|gb|AAZ69523.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Methanosarcina barkeri str. Fusaro] Length = 394 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 79/303 (26%), Positives = 136/303 (44%), Gaps = 19/303 (6%) Query: 6 KKIKTRYVMLSLVTLTVVYF------SWSSHVEDNSPHVARIAIRGQIED---------- 49 + + V+L+L+T+ +V +S VA I I+G I Sbjct: 92 RWMPYLLVLLALITIILVSLVLISSNFGVGGNLGSSEKVAVIYIQGTIFSGNVAEGLGYA 151 Query: 50 -SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMA 107 S+ + I R + DD A+++ + S GGS A + I I+K + + PV+ + ++A Sbjct: 152 TSEAIAGDIRRAAADDGVKAIVLRIDSSGGSPAAAQEIVEEIKKAQAKGIPVVVSMGDLA 211 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 ASA Y IS ++ I+A ++ GSIGV++ + ++ GV KS MK S + Sbjct: 212 ASAAYYISAPTDYIIANPSTNTGSIGVIWVFQNNSLSNEETGVDYYVAKSGEMKDMGSTW 271 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 + + + VV SY FV VSE RN+ + L+DGRI+TG AK++GL+D Sbjct: 272 RGLTDQEKEYADSVVMDSYENFVTEVSEGRNMSRGEVKALADGRIYTGTRAKELGLVDGF 331 Query: 228 GGQEEVWQSLYALGVDQSIRKIKDWNPPK-NYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 G + LG K++ N + + + + ++ +++ Sbjct: 332 GNIYDAIDKAAELGGISGEPKVEYMNKASLSRLLLGSDSKVSNETAKQSVSYFEESPYGK 391 Query: 287 LWA 289 L A Sbjct: 392 LLA 394 >gi|157693342|ref|YP_001487804.1| peptidase [Bacillus pumilus SAFR-032] gi|157682100|gb|ABV63244.1| S49 family unassigned peptidase [Bacillus pumilus SAFR-032] Length = 333 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 69/265 (26%), Positives = 131/265 (49%), Gaps = 17/265 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSS 75 + +A + I G I+D+ + ++ +E+ D S +++ ++S Sbjct: 51 EDGSGAGKIAVLEINGTIQDNGGASSLLGGEGYDHRAFLKELEKAKDDASVKGVLLRVNS 110 Query: 76 PGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 PGG Y I + +++VK +KP+ + MAAS GY +S + I A+ +L GS+GV Sbjct: 111 PGGGVYESAEIHKKLEEVKKAKKPIYVSMGSMAASGGYYVSTPAKKIFASPETLTGSLGV 170 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + Q D LG+ +++KS K SP ++ +MQ +VD+SY FV+++S Sbjct: 171 IMQSLNYSKLADNLGIKYETIKSGKFKDIMSPNRDMTKDERDIMQSMVDNSYEGFVKVIS 230 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 E R + ++DGR++ G +AK GL+D +G E+ +++ + ++ Sbjct: 231 EGRGMSKQDVKKIADGRVYDGTQAKSNGLVDELGYYEDAIKAMKKNEKGLKGATVISYS- 289 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLM 279 +++ + L N+S S L + I + Sbjct: 290 -QSFGWNSLFNMSASKLFKSEIDFL 313 >gi|78222959|ref|YP_384706.1| signal peptide peptidase A [Geobacter metallireducens GS-15] gi|78194214|gb|ABB31981.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Geobacter metallireducens GS-15] Length = 301 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 62/263 (23%), Positives = 133/263 (50%), Gaps = 1/263 (0%) Query: 8 IKTRYVMLSLVTLTVV-YFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66 I +L +++ + + + V + ++G I +S+E+++++ + + + Sbjct: 12 IVAALALLFTLSIQIARLILGDGPMVSSGEGVGYVEVKGPILESEEIVKQLSEMRKKTNV 71 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 A+++ + SPGG + I+ A++K+ K V+ + +AAS GY I+ + +I A Sbjct: 72 KAVVLRIESPGGVIGPSQEIYEAVKKLAKTKKVVVSMGSVAASGGYHIAIPAAVIYANPG 131 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 ++ GSIGVL + V+ +DK+G+ ++KS K SP + + ++Q V+D+ + Sbjct: 132 TITGSIGVLMKLANVEGLMDKVGMKAFTLKSGKFKDAGSPVRALTDEDRALLQGVIDNLH 191 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 FV+ V+E+R +P ++ L+DGR++TG +A + L+D +G E+ + L + Sbjct: 192 TQFVKAVAEARKLPVEEVRRLADGRVYTGEQAVSLKLVDRLGTLEDAVEEAGRLAGIKGE 251 Query: 247 RKIKDWNPPKNYWFCDLKNLSIS 269 + + + L + Sbjct: 252 PTLLMPPKKRKHLRDYLLEEASG 274 >gi|328951771|ref|YP_004369105.1| signal peptide peptidase SppA, 36K type [Desulfobacca acetoxidans DSM 11109] gi|328452095|gb|AEB07924.1| signal peptide peptidase SppA, 36K type [Desulfobacca acetoxidans DSM 11109] Length = 297 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 67/271 (24%), Positives = 126/271 (46%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63 V + + V L V+ + S V + + G I D++ + +++ + Sbjct: 9 VFLLLGAVILFFIGVALLVLPLAGDSLPLAKGDRVGVVEVSGLIRDAKTTLNHLKKFREN 68 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 + A++V ++SPGG+ + I + + + +K V+ + +AAS GY I ++II+A Sbjct: 69 NRIRAIVVRVNSPGGAVGPSQEILEEVIRTREKKKVVASLGTVAASGGYYIVSGADIIMA 128 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 +L GSIGV+ + V+ L K+G+ + ++K+ K SP + P + +Q ++D Sbjct: 129 NPGTLTGSIGVIMNFTNVEQLLSKIGLELFNLKAGKYKDVGSPLRPMTPVEKEYIQGLLD 188 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 + + F+R V+ R + K + DGRI+TG E K +GL+D +G + LG Sbjct: 189 NVHEQFIRDVAHGRRMLVHKVREVGDGRIFTGEEGKNLGLVDALGNLPDAIDLAGRLGGI 248 Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLED 274 + + K F L +L Sbjct: 249 KGKVEAVYPPKEKLSLFGLLFGDDPEEILAR 279 >gi|325291771|ref|YP_004277635.1| protease IV [Agrobacterium sp. H13-3] gi|325059624|gb|ADY63315.1| putative protease IV [Agrobacterium sp. H13-3] Length = 317 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 118/293 (40%), Positives = 180/293 (61%), Gaps = 9/293 (3%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATA 68 + + F W++ + PH+AR+ I G I+D+ EL+ER+++I++ D+ Sbjct: 21 IAAVFLFVAGIFGLYRFLWATPQQSERPHIARVQISGLIQDNTELLERLDKIAKSDNVKG 80 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 LIVS+SSPGG+ Y GE IF+AI+ V +KPV+++V +AASAGY+I+ A ++IVA ETS+ Sbjct: 81 LIVSISSPGGTTYGGERIFKAIRGVAEKKPVVSDVRTLAASAGYMIASAGDVIVAGETSI 140 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIGV+FQYP + +DKLGVS++ +KSSPMKAEPSPF E +A M++ +V SY W Sbjct: 141 TGSIGVIFQYPQIGQLMDKLGVSLQEIKSSPMKAEPSPFHEAPEEAKTMIRSMVMDSYGW 200 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 FV LV++ R +P + L L+DG I+TG +A L+D +GG++E+ GV + + Sbjct: 201 FVDLVADRRKLPREDVLKLADGSIFTGRQALANKLVDTLGGEKEIRGYFETRGVAKDLPI 260 Query: 249 IKDWNPPKNYWFCDLKNLSISSLL--EDTIPL-------MKQTKVQGLWAVWN 292 ++ P + F I+ LL +D IP + + GL +VW Sbjct: 261 VEWRAPSSSSPFSLFSVAQIAKLLGYDDLIPFAGSGQLGADKLFLDGLVSVWQ 313 >gi|217976339|ref|YP_002360486.1| signal peptide peptidase SppA, 36K type [Methylocella silvestris BL2] gi|217501715|gb|ACK49124.1| signal peptide peptidase SppA, 36K type [Methylocella silvestris BL2] Length = 324 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 93/297 (31%), Positives = 155/297 (52%), Gaps = 12/297 (4%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66 +I + V + + S +PH+AR++I G I ++ ++ I RI D A Sbjct: 24 RILAFGAAVIGVLAIGLRLASSDDSVSFAPHIARLSISGLITGDRDTLKLISRIEESD-A 82 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 A++VS+ SPGG+ E ++ ++++ +KP + V +AAS GY+ + ++ IVA Sbjct: 83 AAVLVSIDSPGGTTAGAERLYDQLRRLSAKKPTVAVVGSLAASGGYIAALGADQIVALGN 142 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 SLVGSIGVL +YP V LD +GV +++VKSSP+KA P+ F +P+A + +VD S+ Sbjct: 143 SLVGSIGVLVEYPNVTKLLDTVGVKVEAVKSSPLKAAPNGFEPTSPEARAALASLVDDSF 202 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 WF LV E RN+ + + DGR++TG + + L+D +GG+ E L Sbjct: 203 VWFKDLVRERRNLTAPQLAAVDDGRVFTGRQGLGLHLVDRLGGEREAIAWLEQERAVPKG 262 Query: 247 RKIKDWNPPKNYWFCDLKNLSI-----------SSLLEDTIPLMKQTKVQGLWAVWN 292 KI+DW ++ L + + S LL + ++ + GL ++W Sbjct: 263 LKIRDWKQQGSFGRIGLFSFAARAASIFHLDELSRLLGRSSQFVEARMLDGLVSIWQ 319 >gi|332702712|ref|ZP_08422800.1| signal peptide peptidase SppA, 36K type [Desulfovibrio africanus str. Walvis Bay] gi|332552861|gb|EGJ49905.1| signal peptide peptidase SppA, 36K type [Desulfovibrio africanus str. Walvis Bay] Length = 305 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 67/262 (25%), Positives = 129/262 (49%) Query: 21 TVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSA 80 + F E + + + G I S++L+ I + RDDS +++ + SPGG Sbjct: 34 AMAAFHLLPTGEFAGARLGVVRVEGLIVGSEDLVGWIGELERDDSIKGVLLRIDSPGGVV 93 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + ++ A+ ++ RKPVI + +AAS GY I+ A+ I+A ++L GSIGV + Sbjct: 94 APSQEVYAAVLRLAERKPVIASMGAVAASGGYYIAAAAQEIMANPSTLTGSIGVRMELLN 153 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 ++ +K+G+S + S MK +PF E++P+ + + VV + FV ++++R + Sbjct: 154 IRALAEKVGLSQTLITSGEMKGAGTPFREMSPREREYLTAVVMDMHDQFVSDIAQARGME 213 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ L+DGR +TG +A +GL+D +GG E+ L + + + Sbjct: 214 REQVAALADGRAFTGRQAHGLGLVDHLGGMEDAMDLLRERCGLTGETPVLEGPIEEKSLL 273 Query: 261 CDLKNLSISSLLEDTIPLMKQT 282 + + +I + + + M Sbjct: 274 LRVLSAAIIEPVSEAVSEMTSA 295 >gi|300691993|ref|YP_003752988.1| peptidase S49 [Ralstonia solanacearum PSI07] gi|299079053|emb|CBJ51715.1| Peptidase S49 [Ralstonia solanacearum PSI07] Length = 378 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 73/291 (25%), Positives = 128/291 (43%), Gaps = 15/291 (5%) Query: 7 KIKTRYVMLSLVT-LTVVYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60 +I R+V L+++ L V S+ + H A + + G+I + + +E Sbjct: 92 RIFFRFVTLAIIGGLLYVLASFEGETVSSGRHTALVTLDGEIAANTNASADNINASLEAA 151 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCA 117 DD+ +I+ ++SPGGS I I++++ + I V EM AS GY ++ A Sbjct: 152 FADDNTAGVILKINSPGGSPVQAGMINDDIRRLRAKYKNIPLYVVVEEMCASGGYYVAAA 211 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 ++ I + S+VGSIGVL +DKLGV + + + K PFS V P+ Q Sbjct: 212 ADKIYVDKASIVGSIGVLMDGFGFTGLMDKLGVERRLLTAGTNKGMLDPFSPVPPQQRQF 271 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 Q ++D + F+ +V + R L G WTGA+A ++GL D +G + V + Sbjct: 272 AQAMLDEVHQQFIDVVKQGRGSRLKDDPQLFSGLFWTGAKAVELGLADGIGSADFVAR-- 329 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + D+ +N+ + + L +++ L Sbjct: 330 ----NVIKAPDMVDYTVKENFAERVARKFGTAMGAGAIKALAATGELKLLM 376 >gi|299067011|emb|CBJ38206.1| Peptidase S49 [Ralstonia solanacearum CMR15] Length = 378 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 72/291 (24%), Positives = 127/291 (43%), Gaps = 15/291 (5%) Query: 7 KIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60 +I R+V L ++ + F S+ + H A + + G+I + + ++ Sbjct: 92 RIFFRFVTLGIIGGLLYLFASFEGETVSSGRHTALVTLDGEIAANTNASADNINASLDAA 151 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCA 117 DD+ +I+ ++SPGGS I I++++ + I V EM AS GY ++ A Sbjct: 152 FADDNTAGVILKINSPGGSPVQAGMINDDIRRLRAKYKDIPLYVVVEEMCASGGYYVAAA 211 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 ++ I + S+VGSIGVL +DKLGV + + + K PFS V P+ Q Sbjct: 212 ADKIYVDKASIVGSIGVLMDGFGFTGLMDKLGVERRLLTAGTNKGMLDPFSPVAPQQRQF 271 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 Q ++D + F+ +V + R L G WTGA+A +GL D +GG + V + Sbjct: 272 AQAMLDEVHQQFIDVVKQGRGSRLKDDPQLFSGLFWTGAKAVDLGLADGIGGTDFVAR-- 329 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + D+ +N+ + + L +++ L Sbjct: 330 ----NVIKAPDLVDYTVKENFAERVARKFGTAMGAGAIKALAATGQLKLLM 376 >gi|118580963|ref|YP_902213.1| signal peptide peptidase SppA, 36K type [Pelobacter propionicus DSM 2379] gi|118503673|gb|ABL00156.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Pelobacter propionicus DSM 2379] Length = 295 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 69/290 (23%), Positives = 133/290 (45%), Gaps = 7/290 (2%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA------RIAIRGQIEDSQELI 54 M + I + V++ V + D +A + +RG I DS+E + Sbjct: 1 MSKKMLMIISAVVIVLGGLFVVSMLIARVLLGDADVKIAGNRGVGLVEVRGMILDSRETV 60 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 ++ + D A+++ + SPGG + I ++K RK +I + +AAS GY + Sbjct: 61 RQLRYFLKQDEIRAVVLRVDSPGGVVAPSQEICEEVRKFAARKKIIVSMGSLAASGGYYV 120 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 S + +I A +L SIGV+ + ++ +D++G+ ++K+ K SP +++ Sbjct: 121 SAPATLIYANPGTLTASIGVILKLSNIETLMDRIGIKSHTLKTGKYKDSGSPLRKLSEDD 180 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 M+Q V+DS++ FVR V+ R +P + ++DGRI +G +A + L+D +G ++ Sbjct: 181 RAMLQSVIDSTHEQFVRAVASGRKLPVQQVRRIADGRILSGEQALALKLVDRLGTLQDAI 240 Query: 235 QSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + L + ++ P K + DL LE + + Sbjct: 241 EEAGRLSGIEGEPEVV-LPPRKKVNYWDLLADGTEGALEKALGRASGGML 289 >gi|330815967|ref|YP_004359672.1| Peptidase, U7 family protein [Burkholderia gladioli BSR3] gi|327368360|gb|AEA59716.1| Peptidase, U7 family protein [Burkholderia gladioli BSR3] Length = 338 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 63/286 (22%), Positives = 129/286 (45%), Gaps = 14/286 (4%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIERISR 62 + ++++ +V + ++ +S H A + I G+I +++++ ++ Sbjct: 57 FRFLWLIVFVVLVFALFDFSGDGKLSSSRHTALVTIDGEIAAGTNANAEDINSALDDAFE 116 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCASN 119 D +++ ++SPGGS ++ I++++ + KP+ V +M AS GY I+ A++ Sbjct: 117 DSGTVGVVLRINSPGGSPVQAGIVYDEIRRLRKKYPSKPLYVVVSDMCASGGYYIASAAD 176 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 I + S+VGSIGVL +DKLGV + S K PFS PK + Q Sbjct: 177 KIYVNQASIVGSIGVLMDGFGFTGLMDKLGVQRRLHTSGENKGFFDPFSPETPKMDEHAQ 236 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 ++D + F++ V + R ++ + G WTGA++ ++GL D G + V + + Sbjct: 237 AMLDEIHAQFIQAVKDGRGKRLHESPEIFSGLFWTGAKSVELGLADGFGTTDTVARDVLK 296 Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 I D+ ++ + + + ++ V+ Sbjct: 297 ------APDIVDYTVKESLSNRVARRFGAAIGGGAVKSALSESGVR 336 >gi|75674258|ref|YP_316679.1| peptidase S49, SppA [Nitrobacter winogradskyi Nb-255] gi|74419128|gb|ABA03327.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Nitrobacter winogradskyi Nb-255] Length = 327 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 153/301 (50%), Gaps = 15/301 (4%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66 ++ + +++ V Y S S + R+ I G I Q+ +E +ER+ + A Sbjct: 24 RVASALIVIGAVVALGAYASPLGGRLTGSSAIQRVNIDGLIRSDQKRVEALERLGK-SKA 82 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 A+IV ++SPGG+ E ++ A+ ++K +KP++ V + AS GY+ + AS+ IVA +T Sbjct: 83 PAVIVHINSPGGTTAGSEELYEALTRLKAKKPMVVVVEGLGASGGYIAALASDHIVAQQT 142 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 +LVGSIGVLFQYP V L +GV +++VKSSP+KA PS + +P+A + +V S+ Sbjct: 143 ALVGSIGVLFQYPNVTELLKTVGVKVEAVKSSPLKAAPSGYEPTSPEARAAIDALVKDSF 202 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 WF LV R + + ++DGR++TG +A + LID +G ++ L A Sbjct: 203 AWFRGLVQNRRGMDDAQLEKVADGRVFTGRQALDLKLIDQLGDEKVAIAWLVAEKKVAPD 262 Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLED--------------TIPLMKQTKVQGLWAVWN 292 ++D+ + + S + + + + G+ A+W+ Sbjct: 263 LPVRDFKLTPRFTDLTFIRTAASVAFDALGLGSIARQVEQAGIVRAADRLNLDGMLALWH 322 Query: 293 P 293 P Sbjct: 323 P 323 >gi|302344134|ref|YP_003808663.1| signal peptide peptidase SppA, 36K type [Desulfarculus baarsii DSM 2075] gi|301640747|gb|ADK86069.1| signal peptide peptidase SppA, 36K type [Desulfarculus baarsii DSM 2075] Length = 300 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 67/259 (25%), Positives = 126/259 (48%), Gaps = 3/259 (1%) Query: 35 SPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 V + + G I + +I ++ DDS A+++ + SPGG A + IFR + + Sbjct: 40 GKKVGVVEVSGTITSAAPVIFDLQDFREDDSIKAIVLRVDSPGGGVAASQEIFREVARTA 99 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 KPV+ + E+AAS GY ++ I+A+ ++ GSIGV+ P V KLGV ++ Sbjct: 100 EVKPVVCSMGEVAASGGYYVAAPCTKIMASPGTITGSIGVIASVPDVTDLFGKLGVRMQY 159 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 V++ +K +P ++P M+Q ++D S+ F+ V+ +R + K ++DGR+ Sbjct: 160 VQAGKLKGAGAPGRPLSPDERDMLQQIIDLSHRQFIDDVASARKLDKAKLRAVADGRVIL 219 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLED 274 G A +GL+D G + L ++ ++ W +L +S+ + Sbjct: 220 GEAAVGLGLVDETGNFNDAVDLAAELAHIDGQPELIWPADEESSWLGNLVQEQVSTAVRA 279 Query: 275 TIPLMKQTKVQGLWAVWNP 293 +++ +VQ ++NP Sbjct: 280 IADNLQKPRVQ---YIFNP 295 >gi|224369572|ref|YP_002603736.1| SppA [Desulfobacterium autotrophicum HRM2] gi|223692289|gb|ACN15572.1| SppA [Desulfobacterium autotrophicum HRM2] Length = 300 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 69/265 (26%), Positives = 129/265 (48%), Gaps = 2/265 (0%) Query: 9 KTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66 + +++V T FS S+ + ++ + I G I S+E+ ++++ D + Sbjct: 21 FALVLTVAIVMGTSAMFSSTLSTPFNTDQGNIGIVEIVGVIASSKEVSQQLKDFREDPAI 80 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 A+++ + SPGG + I+R I K K K VI + +AAS GY + A++ ++A Sbjct: 81 KAIVLRIDSPGGGVGPSQEIYREIIKTKKIKKVIASLGSVAASGGYYAASATDAVIANPG 140 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 ++ GSIGV+ +Y ++ ++K+G++ +KS K SP E+ PK ++Q V D + Sbjct: 141 TITGSIGVIMEYANLQKIMEKIGLTPVVIKSGEFKDMGSPVREITPKERAILQGVADEVH 200 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 FVR V+ R++ + L+DGRI+TG A + L+D +G E+ + + Sbjct: 201 QQFVRDVASGRSLEQAQVEKLADGRIYTGETALDLHLVDRLGNLEDAIAWAGEMAGIKGK 260 Query: 247 RKIKDWNPPKNYWFCDLKNLSISSL 271 + F +L + Sbjct: 261 VNPVYPREKRLGIFKELVSTLFKQA 285 >gi|39996336|ref|NP_952287.1| signal peptide peptidase SppA, 36K type [Geobacter sulfurreducens PCA] gi|39983216|gb|AAR34610.1| signal peptide peptidase SppA, 36K type [Geobacter sulfurreducens PCA] Length = 260 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 61/250 (24%), Positives = 128/250 (51%), Gaps = 1/250 (0%) Query: 35 SPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 + ++G I DSQE +++++ + + S A+++ + SPGG + I+ A++++ Sbjct: 7 GDGIGYAEVKGPIIDSQETVKQLDDLRKKSSVKAVVLRVESPGGVIGPSQEIYAAVKRLA 66 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 K V+ + +AAS GY ++ + +I A ++ GSIGVL + ++ +DK+G+ + Sbjct: 67 ATKKVVVSMGSVAASGGYHVAVPAAVIYANPGTITGSIGVLMKLSNIEGLMDKVGLKAFT 126 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 +KS K SP ++ + ++Q V+D+ + FVR V+E R +P ++ L+DGR++T Sbjct: 127 LKSGKFKDSGSPVRKLTEEERAVLQGVIDNLHDQFVRAVAEGRQLPVEEVRRLADGRVYT 186 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLED 274 G +A ++ L+D +G + L + + P K D+ ++ + Sbjct: 187 GEQALRLKLVDRLGTLHDAVMEAGRLAGIEGEPTLI-IPPKKRKLLRDMLFGEVAEAVRG 245 Query: 275 TIPLMKQTKV 284 ++ + Sbjct: 246 SVRKEEGLSF 255 >gi|91789506|ref|YP_550458.1| peptidase S49 [Polaromonas sp. JS666] gi|91698731|gb|ABE45560.1| peptidase S49 [Polaromonas sp. JS666] Length = 361 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 67/272 (24%), Positives = 122/272 (44%), Gaps = 13/272 (4%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERIS 61 ++ ++ + + ++ + + +PH A + I+G+I + + + Sbjct: 82 FVRLAWLAFFIALVWMLLHRGTPATDAAAPHTAVVEIKGEIAAGADASAEFVNAALRAAF 141 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASN 119 DD A A+++ ++SPGGS + I ++K ++KPV V E ASA Y I+ A++ Sbjct: 142 EDDGAKAVVLLINSPGGSPVQAGMMNDEILRLKIKHKKPVYAVVEESCASAAYYIAVAAD 201 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 I + S+VGSIGVL +DKLGV + + + K PFS + K Q Sbjct: 202 KIYVDKASIVGSIGVLMDGFGFTGLMDKLGVERRLLTAGENKGFLDPFSPQSDKQRVYAQ 261 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 ++D + F+ +V R + + G W+G +A ++GL D +GG E V + + Sbjct: 262 AMLDQIHQQFITVVKAGRGKRLKEMPEMFSGLFWSGQQAVELGLADQLGGLEYVAREVVK 321 Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 +I D+ +N K + Sbjct: 322 ------AEEIIDYTRRENVAERLAKKFGAAMG 347 >gi|113868537|ref|YP_727026.1| periplasmic serine protease (ClpP class) [Ralstonia eutropha H16] gi|113527313|emb|CAJ93658.1| periplasmic serine protease (ClpP class) [Ralstonia eutropha H16] Length = 394 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 72/292 (24%), Positives = 126/292 (43%), Gaps = 17/292 (5%) Query: 7 KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 +I R+V +L+L+ +T+ F + + H A + + G+I ++ + ++ Sbjct: 108 RIFFRFVGLALLALILVTLFDFKGDGAISTSGRHTAMVTLEGEIAAGTPASAESINASLQ 167 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLIS 115 D +A +I+ ++SPGGS I IQ++ KP V E+ AS GY ++ Sbjct: 168 AAFADGNAAGVILKINSPGGSPVQAGIINDEIQRLRTLYPSKPFYVVVEEICASGGYYVA 227 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL +DKLGV + S K PFS PK Sbjct: 228 AAADKIYVDKASIVGSIGVLMDGFGFTGLMDKLGVERRLYTSGANKGMLDPFSPQVPKQK 287 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 + ++ + F+ +V E R L G W+G A ++GL D +G + V + Sbjct: 288 AFAEAMLKQIHQQFIDVVKEGRGDRLKDDPELFSGLFWSGERAVELGLADGLGSADYVAR 347 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + I D+ +N K + ++ ++QG+ Sbjct: 348 DVLK------AEDIVDYTVKENIAERVAKRFGAAVGSAAMKTMLWSNRMQGM 393 >gi|167629015|ref|YP_001679514.1| signal peptide peptidase sppa, 36k type [Heliobacterium modesticaldum Ice1] gi|167591755|gb|ABZ83503.1| signal peptide peptidase sppa, 36k type [Heliobacterium modesticaldum Ice1] Length = 310 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 68/294 (23%), Positives = 143/294 (48%), Gaps = 23/294 (7%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------ELIERIERI 60 S++ + + + VA + + G I D+ +++E + R+ Sbjct: 19 SVLLILFRPGAHRADGPSAGNTVAVVRLEGMIADAGAGAGAGLLGGESGSGQVLEALRRL 78 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASN 119 +D A+++ ++SPGG++ A + I R + +++ K V+ + ++AAS GY ++ ++ Sbjct: 79 QQDKQIKAVVLRINSPGGTSAASQEIGREVDRLRESGKVVVASMGDVAASGGYWVAARAD 138 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 IVA + GSIGV+ + K+G +KS P K S E+ P+ ++Q Sbjct: 139 KIVANAATTTGSIGVILDLANLTELYQKIGYRPNVIKSGPYKDIASSAREMTPEERAILQ 198 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 +VD Y F+ +V+E R++P+++ L+DGR++TG +AK++GL+D +G + Sbjct: 199 GMVDDIYQQFIDVVAEGRHMPHEQVRALADGRVFTGRQAKELGLVDELGNFYDAVALAGT 258 Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 + + +I+++ + L ++ + L T+ ++ L + P Sbjct: 259 MAGIRGEPEIREYG-RGSALDRLLSGMTSTGLFGQTLSPVR------LLDLLQP 305 >gi|221214108|ref|ZP_03587081.1| peptidase S49 [Burkholderia multivorans CGD1] gi|221166285|gb|EED98758.1| peptidase S49 [Burkholderia multivorans CGD1] Length = 330 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 122/286 (42%), Gaps = 17/286 (5%) Query: 7 KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 KI R+ + L+ ++ FS + H A + I G+I +++++ ++ Sbjct: 44 KIFFRFAFLAVFLLLAFALIDFSSDAKFASGGRHTALVTIDGEIAAGTNANAEDINTALD 103 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLIS 115 DD +++ ++SPGGS ++ I+++ KP+ V +M AS GY I+ Sbjct: 104 AAFEDDGTAGVVLRINSPGGSPVQAGMVYDEIRRLRGKYPDKPLYVVVTDMCASGGYYIA 163 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL + KLGV + S K PFS PK Sbjct: 164 SAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFYDPFSPETPKMD 223 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q+++D + F++ V + R +T + G WTG ++ ++GL D G + V + Sbjct: 224 AHAQELLDQVHAQFIKAVKDGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDSVAR 283 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 + + D+ ++ + + L Sbjct: 284 EVIK------APDLVDYTVKESLTNRVARKFGAAVGGAAMKALTAA 323 >gi|312131830|ref|YP_003999170.1| signal peptide peptidase sppa, 67k type [Leadbetterella byssophila DSM 17132] gi|311908376|gb|ADQ18817.1| signal peptide peptidase SppA, 67K type [Leadbetterella byssophila DSM 17132] Length = 581 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 71/260 (27%), Positives = 129/260 (49%), Gaps = 11/260 (4%) Query: 30 HVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPGGSA 80 +S VA I G+I D ++E I+ I+R +D A+++ ++SPGGSA Sbjct: 293 KESTSSDRVAVIVSEGEIVDGNGGEGFIAAEEFIKEIKRARKDKKVKAIVLRINSPGGSA 352 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 A + ++R IQ K KPV + +AAS GY ++ + IVA T++ GSIG+ Sbjct: 353 MASDKMWREIQLTKKEKPVFASMGNVAASGGYYMAMGCDTIVAHPTTITGSIGIFGVMLN 412 Query: 141 VKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + F+ DKLGV+ V + PS ++ Q +Q++++ Y F ++ R + Sbjct: 413 FQKFMNDKLGVTFDEVSTHTYSNSPSSVKKMTEVEKQSIQNMINKGYESFTTKAAQGRKM 472 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 ++ L+ GR+WTG +AK+ GL+D++G + + + ++K + PK+ + Sbjct: 473 DLNELKSLAGGRVWTGEQAKENGLVDILGDLDTAIELAAKKAGIKD-YQVKYYPYPKSDF 531 Query: 260 FCDLKNLSISSLLEDTIPLM 279 ++ + S I + Sbjct: 532 DRLIEKFTKSGSEAQLIEKL 551 Score = 83.1 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 38/297 (12%), Positives = 101/297 (34%), Gaps = 26/297 (8%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQ-------ELIERI 57 + + ++ S E V ++ + G+ I + EL + Sbjct: 26 MGIGSMFSSSEGTSEVKEGTVLKLDLDGKFTDLKKPEDPFTGILGDEINYISIRELQTSL 85 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 + + D + +S++ P E + A+ K I + + L+ Sbjct: 86 KNAALDPKIKGISISINDPSMGFAELEEVRSALLNFKKSGKFIYTYGDYLSEKAILLCAV 145 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVNPKAV 175 ++ V G+ + Y + L+KLG+ + K+ P+ +++ + Sbjct: 146 ADSAFIHPEGSVEFNGLSSEITYFQGTLEKLGIEPIIFRVGEYKSAVEPYFRKDMSEASK 205 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVW 234 + ++ + S H ++ +N L + I+T EA K L+ V ++ Sbjct: 206 EQIKSYLGSISHKVYSNFAQDKNWALASVDSLLNKAPIFTSDEALKFDLVQAVAYADQYE 265 Query: 235 QSLYALGVDQSIRK--IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 ++ + + + ++ K + ++ ++ + ++ +G A Sbjct: 266 DAIKNKLGVKKVEYATLSTYSKAKKLIKESTSSDRVAVIVSEG-EIVDGNGGEGFIA 321 >gi|237800341|ref|ZP_04588802.1| peptidase S49, SppA [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023198|gb|EGI03255.1| peptidase S49, SppA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 332 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 69/291 (23%), Positives = 121/291 (41%), Gaps = 18/291 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61 K V + + S H A I ++G I D ++ ++ +++ Sbjct: 49 FFKLLTFAFLFVAVVLPMLDLEGGASRRSSHTALIDVQGVIADKEAASAENIVTALQKAF 108 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118 D+ +I+ ++SPGGS ++ I++++ KP I + AS Y I+ A+ Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRATKPDIKVYAVITDLGASGAYYIASAA 168 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I A + SLVGSIGV ++KLGV ++ S KA PF Q Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGTMEKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q V+D+++ F+ V + R L G +WTG +A +GL+D +G V + Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKDHPELFSGLVWTGEQAVGLGLVDGLGNASYVARE 288 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 L R I ++ ++ + K + S + + I + L Sbjct: 289 LIK------ERDIVEYTVEESPFDRFSKKIGTS--MAERIATLVGFSGPTL 331 >gi|85714139|ref|ZP_01045128.1| peptidase S49, SppA [Nitrobacter sp. Nb-311A] gi|85699265|gb|EAQ37133.1| peptidase S49, SppA [Nitrobacter sp. Nb-311A] Length = 327 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 84/301 (27%), Positives = 154/301 (51%), Gaps = 15/301 (4%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66 ++ + +++ V Y + + + R++I G I Q+ +E +ER+ + SA Sbjct: 24 RVASALIVIGAVIAVGAYATPWGGKLTGASAIQRVSINGLIRSDQKRVEALERLGK-SSA 82 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 A+IV ++SPGG+ E ++ A+ ++K +KP++ V + AS GY+ + AS+ IVA +T Sbjct: 83 PAVIVHINSPGGTTAGSEELYDALTRLKAKKPMVVVVEGLGASGGYIAALASDHIVAQQT 142 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 +LVGSIGVLFQYP L +GV ++++KSSP+KA P+ + +P+A + +V S+ Sbjct: 143 ALVGSIGVLFQYPNFTELLKTVGVQMEAMKSSPLKAAPNGYEPTSPEARAAIDALVKDSF 202 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 WF LV + R + + ++DGR++TG +A + LID +G ++ L A Sbjct: 203 DWFRGLVRDRRGMDDAQLEKVADGRVFTGRQAVNLKLIDQLGDEKVAIAWLVAEKKVAPD 262 Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDT--------------IPLMKQTKVQGLWAVWN 292 ++D+ + + S + + + + G+ A+W Sbjct: 263 LPVRDFKLSPRFTDLTFLRTAASVAFDALGLNSIARQVEQTGFVGAADRLGLNGMLALWQ 322 Query: 293 P 293 P Sbjct: 323 P 323 >gi|307150266|ref|YP_003885650.1| signal peptide peptidase SppA, 67K type [Cyanothece sp. PCC 7822] gi|306980494|gb|ADN12375.1| signal peptide peptidase SppA, 67K type [Cyanothece sp. PCC 7822] Length = 599 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 65/269 (24%), Positives = 131/269 (48%), Gaps = 9/269 (3%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATA 68 ++L+ + + ++ +A + G+I D + + + +I +D + A Sbjct: 292 ISLSTYAEGLLNENQASTNQIAVVYADGEIVDGEGTVNNIGGERFAKELRKIRQDPNIKA 351 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 +++ ++SPGGSA A E I R I + +KP++ + +AAS GY IS ++ I A +++ Sbjct: 352 VVLRVNSPGGSATASEIIGREIHLISQQKPIVVSMGNVAASGGYWISAGASHIFAEPSTI 411 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIGV ++ + GVS +K++ + + + + + + V Y+ Sbjct: 412 TGSIGVFGLLFNIQKIANDNGVSWDVIKTAKLADINTSTRPKTEQELAIYKRSVGQVYNL 471 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 F+ VS+SRN+ +K ++ GR+W+G +AKK+GL+D +GG E Sbjct: 472 FIEKVSQSRNLSPEKVREIAQGRVWSGQDAKKIGLVDELGGLEAAIDYAAKQANLGKNWT 531 Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 I+++ + + L+ L + + + P Sbjct: 532 IQEYPSRRTFESVILEKLFQTKIQDSLTP 560 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 91/241 (37%), Gaps = 5/241 (2%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAG--EAIFRAIQKVKNRKPVITEVHEMAA 108 + L+ +E+ S+D + + + +A++ + I Sbjct: 84 RSLLNVVEKASKDSRIMGIFIDGRGVEADNGYATLSEVRKALEDFRAAGKKIVFYDVDLD 143 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167 Y ++ ++ +V ++ G+ Q ++ L K G+ ++ V+ K+ P+ Sbjct: 144 EKKYFLASVADQVVLNPMGMMELNGIGVQPMFLAGALKKYGIGVQVVRVGEYKSAVEPYI 203 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLID 225 +++P Q +++ + F+ VS SR I K ++D + EA+K+GL+D Sbjct: 204 RQDLSPANRLQTQVLLNDLWANFLTTVSSSRKISATKLQDIADNQGVLMPKEAEKLGLVD 263 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 V +EV L S + + L N + +S + + V Sbjct: 264 RVAYFDEVLADLKKQTGQTSADDKTFAQISLSTYAEGLLNENQASTNQIAVVYADGEIVD 323 Query: 286 G 286 G Sbjct: 324 G 324 >gi|308174636|ref|YP_003921341.1| signal peptide peptidase [Bacillus amyloliquefaciens DSM 7] gi|307607500|emb|CBI43871.1| signal peptide peptidase [Bacillus amyloliquefaciens DSM 7] gi|328554562|gb|AEB25054.1| signal peptide peptidase [Bacillus amyloliquefaciens TA208] gi|328912966|gb|AEB64562.1| signal peptide peptidase [Bacillus amyloliquefaciens LL3] Length = 335 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 68/319 (21%), Positives = 144/319 (45%), Gaps = 42/319 (13%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSS------------------------HVEDNSPHVARI 41 K+ + + + ++V+ +A + Sbjct: 4 KRWIALVIAIGIFGVSVIASVTVGVLKNVGDTGGGFASLTDDSEEVTLDEGSPGSKIAVL 63 Query: 42 AIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + G IEDS + ++ IER D + +++ ++SPGG Y I Sbjct: 64 EVDGTIEDSGESAGLLSSGGYDHRSFLKHIERAKEDKNVKGIVLKINSPGGGVYESAEIH 123 Query: 88 RAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + ++++K +KP+ + MAAS GY IS A++ I A+ +L GS+GV+ + Sbjct: 124 KKLEELKKETKKPIYVSMGSMAASGGYYISTAADKIYASPETLTGSLGVIMESVNYSKLA 183 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 D+LG+ +++KS K SP ++ + ++MQ +V+ SY FV ++S+ R++ Sbjct: 184 DELGIKFETIKSGAHKDIMSPTRDMTKEERKIMQTMVNDSYEGFVNVISKGRHMSKADVK 243 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 ++DGR++ G +AKK+GL+D +G ++ ++ + + + + + L + Sbjct: 244 KIADGRVYDGRQAKKIGLVDELGFYDDTISAMKKDHKNMKNASVITYE--EGFGLGSLFS 301 Query: 266 LSISSLLEDTIPLMKQTKV 284 +S + + + I + ++ Sbjct: 302 MSAAKMFKSEIDFLNMKEL 320 >gi|86747765|ref|YP_484261.1| signal peptide peptidase SppA, 36K type [Rhodopseudomonas palustris HaA2] gi|86570793|gb|ABD05350.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49 [Rhodopseudomonas palustris HaA2] Length = 321 Score = 152 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 93/297 (31%), Positives = 161/297 (54%), Gaps = 11/297 (3%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66 ++ V + V S + S +ARI I G I + E +E +ER+ + +SA Sbjct: 22 RVAAVLVAIGAVIAVGAMVSPAGPALTTSGSIARIKIDGLIRSNSERVEALERLEKSNSA 81 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 A+IV ++SPGG+ E ++ A+ ++K +KP++ V +AAS GY+ + AS+ I+A ++ Sbjct: 82 -AVIVHINSPGGTTAGSEELYTALMRLKAKKPMVVVVEGLAASGGYIAALASDHIIAQQS 140 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 SLVGSIGVLFQYP V + +GV ++ VKSSP+KA P+ F +P+A ++ +V SY Sbjct: 141 SLVGSIGVLFQYPNVSELMKTVGVKVEEVKSSPLKAAPNGFEPTSPEARAALESLVRDSY 200 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 WF LV + R + D+ +++DGR++TG +A + LID +G ++ L +S Sbjct: 201 AWFRDLVKQRRAMDDDQLGIVADGRVFTGRQAVGLKLIDQLGDEKTAVAWLETEKRVKSG 260 Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLED-TIPLMKQ---------TKVQGLWAVWNP 293 ++D+ + + S L+ + ++ + + G+ A+W P Sbjct: 261 LPVRDFKLSPQFGDLTFLRAAASITLDALGLGVIARQVEQSGAMHLGLDGMLALWVP 317 >gi|311745841|ref|ZP_07719626.1| signal peptide peptidase SppA, 67K type [Algoriphagus sp. PR1] gi|126576044|gb|EAZ80322.1| signal peptide peptidase SppA, 67K type [Algoriphagus sp. PR1] Length = 588 Score = 152 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 72/276 (26%), Positives = 137/276 (49%), Gaps = 10/276 (3%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------SQELIERIERISRDDSA 66 +S + T + + + +S +A I G+I D S + + I + +DD+ Sbjct: 285 ISTINATKLNTTVKTKNITSSNRIAVILAEGEIVDGSVEGAISSDKFAKEIRKARKDDNI 344 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 A+++ ++SPGGS A E I+R + + K KP+ + E+AAS GY IS ++ IVA Sbjct: 345 KAIVLRVNSPGGSVLASEVIWREMTEAKKAKPLYVSMGEVAASGGYYISAPADTIVAQPN 404 Query: 127 SLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 ++ GSIG+ + + L +KLG++ V++ + +P E+ +++Q V+ Sbjct: 405 TITGSIGIFGIWFNAQELLNEKLGITSDVVETGQLSDFMNPTRELTDIERKIVQTNVEKG 464 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y F+ VSE R + + ++ GR+WTG +AK+ GL+DV+G ++ + S Sbjct: 465 YETFISRVSEGRGMSAEAVKEVASGRVWTGNQAKERGLVDVLGSLDDTIELAAERIDASS 524 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 ++ + P + WF + N +++ + Sbjct: 525 DYRVIYY-PQQKPWFETIMNEFSNNVQLRILKSELG 559 Score = 93.5 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 43/306 (14%), Positives = 106/306 (34%), Gaps = 29/306 (9%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRG-QIED---SQELI-------------- 54 +++S + ++ S S V + + + G I + +L Sbjct: 22 ILVSFGIIGMIAASGSEEVTVKENTILHLNLNGRTIVERTADDDLDLSIFGSGFGGPMTA 81 Query: 55 ------ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + I+ DD+ + ++ I ++ K+ I E+ Sbjct: 82 GLVNLKKAIQAAKEDDNIQGIYLNTGLVNAGQANLLEIREFLEDFKSSGKFILAYDEIFT 141 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167 GY ++ ++ I + G ++K DK+GV + + K+ PF Sbjct: 142 EGGYYLASVADEIYLNPMGGIDFNGFSSNTLFLKGLFDKVGVKPEVFRVGEFKSAVEPFI 201 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLID 225 ++++P+ + + + ++ ++ESR++ D ++ + +A L+ Sbjct: 202 LTQMSPENRLQTEAFLSDMNDFALKNIAESRDVNLDSLTKTNNMMLVREPEDAVTYKLVT 261 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI--PLMKQTK 283 + ++E+ L I N K KN++ S+ + + + Sbjct: 262 GLAYEDEIHSKLREKLGLGEDDDISTINATKLNTTVKTKNITSSNRIAVILAEGEIVDGS 321 Query: 284 VQGLWA 289 V+G + Sbjct: 322 VEGAIS 327 >gi|294341005|emb|CAZ89400.1| putative Peptidase S49 [Thiomonas sp. 3As] Length = 327 Score = 152 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 66/277 (23%), Positives = 112/277 (40%), Gaps = 15/277 (5%) Query: 8 IKTRYVMLSLVTLTVV--YFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60 I R+V+L +V L + PH A I + G+I + + ++ Sbjct: 46 IFFRFVLLGIVALIFFGGMITEFGSRTATGPHTALIELNGEISIGSQASADNINAALQDA 105 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCAS 118 +I+ ++SPGGS IF I++++ + KPV E+ AS Y ++ A+ Sbjct: 106 FSSPDTRGVILRINSPGGSPVQASQIFAEIERLRAKYNKPVYAVCEEVCASGAYYVAAAA 165 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 N I SLVGSIGVL +DKLGV+ + + + K PF+ + Sbjct: 166 NDIYVNPASLVGSIGVLMDGFGFSGLMDKLGVTRRLLTAGANKGFMDPFTPMPENQKTYA 225 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 +++ + F+ V + R + G +WTG A K GL D G +++ + Sbjct: 226 LGMLEQIHKQFIAAVEKGRGVRLKVNDETFSGLVWTGESAVKQGLADGYGDVDQIARDKI 285 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 +I D+ +N K S + Sbjct: 286 K------APEIVDYTVQENVAERLAKRFGASLGMGAV 316 >gi|304392326|ref|ZP_07374267.1| signal peptide peptidase A [Ahrensia sp. R2A130] gi|303295430|gb|EFL89789.1| signal peptide peptidase A [Ahrensia sp. R2A130] Length = 323 Score = 152 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 103/278 (37%), Positives = 166/278 (59%), Gaps = 13/278 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 S + H+AR++I G I+ + L+E +E+I +DDS ++++++SPGG+ GE IF Sbjct: 45 FSGQGASGDHIARVSISGVIQQDRPLLEMLEKIEKDDSVKGVVLTINSPGGTTVGGEDIF 104 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 A++KV +KPV V +AASAGY+I+ S+ IVA +S+VGSIGV+FQYP LDK Sbjct: 105 NAVRKVAEKKPVAASVGTLAASAGYMIATGSDHIVARRSSIVGSIGVIFQYPQAHKLLDK 164 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 +GVS++ VKS+P+KAEPSPF P A+ ++++++D SY WFV LV++ R + + L L Sbjct: 165 IGVSLEEVKSAPLKAEPSPFHVPPPGAIAVIEELIDDSYQWFVDLVTDRRPLNRAEVLAL 224 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY--------- 258 +DGRI +G + LID +G +E + + A ++ DWNP + Sbjct: 225 ADGRIMSGDRGVETKLIDAIGDEEAARKWITAKDGIADDLELVDWNPKRKEDSLFFRSQA 284 Query: 259 --WFCDLKNLSISSLLEDTIPLM--KQTKVQGLWAVWN 292 W L ++L ++ + + K+ + GL ++W Sbjct: 285 RAWVAQQLGLPAAALPDEALDRIIPKRLFLDGLLSLWQ 322 >gi|161525359|ref|YP_001580371.1| peptidase S49 [Burkholderia multivorans ATCC 17616] gi|189349904|ref|YP_001945532.1| protease IV [Burkholderia multivorans ATCC 17616] gi|160342788|gb|ABX15874.1| peptidase S49 [Burkholderia multivorans ATCC 17616] gi|189333926|dbj|BAG42996.1| protease IV [Burkholderia multivorans ATCC 17616] Length = 330 Score = 152 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 122/286 (42%), Gaps = 17/286 (5%) Query: 7 KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 KI R+ + L+ ++ FS + H A + I G+I +++++ ++ Sbjct: 44 KIFFRFAFLAVFLLLAFALIDFSSDAKFASGGRHTALVTIDGEIAAGTNANAEDINTALD 103 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLIS 115 DD +++ ++SPGGS ++ I+++ KP+ V +M AS GY I+ Sbjct: 104 AAFEDDGTAGVVLRINSPGGSPVQAGMVYDEIRRLRGKYPDKPLYVVVTDMCASGGYYIA 163 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL + KLGV + S K PFS PK Sbjct: 164 SAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFYDPFSPETPKMD 223 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q+++D + F++ V + R +T + G WTG ++ ++GL D G + V + Sbjct: 224 AHAQELLDQVHAQFIKAVKDGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDSVAR 283 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 + + D+ ++ + + L Sbjct: 284 DVIK------APDLVDYTVKESLTNRVARKFGAAVGGAAMKALTAA 323 >gi|121605973|ref|YP_983302.1| peptidase S49 [Polaromonas naphthalenivorans CJ2] gi|120594942|gb|ABM38381.1| peptidase S49 [Polaromonas naphthalenivorans CJ2] Length = 360 Score = 152 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 64/276 (23%), Positives = 124/276 (44%), Gaps = 13/276 (4%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERIS 61 ++ +++ ++ L + + + + PH A + I+G+I + + + + Sbjct: 81 FVRMSWLLFFIILLWMALQRGTPVTDASVPHTAVVEIKGEIAEGADASAEFVNAALRTAF 140 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASN 119 D+ + A+++ ++SPGGS + I ++K ++KPV V E ASA Y I+ +++ Sbjct: 141 EDEGSKAIVLLINSPGGSPVQAGMMNDEILRLKTKHKKPVYAVVEESCASAAYYIAVSAD 200 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 I + S+VGSIGVL +DKLGV + + + K PFS + K Q Sbjct: 201 QIFVDKASIVGSIGVLMDSFGFSGLMDKLGVERRLLTAGENKGFLDPFSPQSDKQRAFAQ 260 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 ++D + F+ +V R +T + G W G +A ++GL D +G + V + + Sbjct: 261 AMLDQIHQQFIAVVKAGRGKRLKETPEMFTGLFWNGQQAVELGLADHLGNLDYVAREVVK 320 Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 + +I D+ +N K + Sbjct: 321 ------VEEIIDYTRRENVAERLAKKFGAAMGEGAM 350 >gi|92115699|ref|YP_575428.1| signal peptide peptidase SppA, 36K type [Nitrobacter hamburgensis X14] gi|91798593|gb|ABE60968.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Nitrobacter hamburgensis X14] Length = 325 Score = 152 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 83/270 (30%), Positives = 141/270 (52%), Gaps = 15/270 (5%) Query: 38 VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + R+ I G I + Q +E +ER+ + +A A+IV ++SPGG+ E ++ A+ ++K +K Sbjct: 53 IQRVNIEGLIRNDQNRVEALERLGK-SNAPAVIVHINSPGGTTAGSEQLYDALMRLKAKK 111 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 P++ V + AS GY+ + AS+ I+A +T+LVGSIGVLFQYP L +GV ++ VKS Sbjct: 112 PMVVVVDGLCASGGYIAALASDHIIAQQTALVGSIGVLFQYPNFTDLLKTVGVKVEEVKS 171 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 SP+KA P+ F +P+A + +V SY WF LV R + + ++DGR++TG + Sbjct: 172 SPLKAAPNGFEPTSPEARAALDALVKDSYAWFRGLVQTRRGMDNGQLEKVADGRVFTGRQ 231 Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLED--- 274 A + LID +G ++ L A ++D+ + + S + Sbjct: 232 AVDLKLIDQLGDEKAAIAWLVAEKKITPDLPVRDFKLSPRFGDMTFLRTAASVTFDALGL 291 Query: 275 -----------TIPLMKQTKVQGLWAVWNP 293 + + + G+ A+W P Sbjct: 292 SSIARQVEQTGIVRAADRLGLDGMLALWQP 321 >gi|254459026|ref|ZP_05072449.1| signal peptide peptidase SppA, 36K type [Campylobacterales bacterium GD 1] gi|207084297|gb|EDZ61586.1| signal peptide peptidase SppA, 36K type [Campylobacterales bacterium GD 1] Length = 289 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 69/266 (25%), Positives = 131/266 (49%), Gaps = 5/266 (1%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66 I+ + + V + V+ F+ S + ++ +I + G I + E++E+IE+ +++ Sbjct: 17 FIQNHFKAMVFVLILVLIFAPESEQDLTQNNLQQINLVGPIIEVSEILEQIEKAGANNNV 76 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 +++ + SPGG+ I AI++++ +KPVI AS Y S +N I+A Sbjct: 77 KGVLLVVDSPGGAVAPSIEIAYAIKRLRTKKPVIAYAKGTIASGSYYASIWANEIIANPG 136 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 S+VGSIGV+ Q + +DK+G+S +SVK+ K +P + P + + V+ +Y Sbjct: 137 SMVGSIGVIMQGADMSELMDKIGISTQSVKAGKYKQVGTPDRKWEPYEINELNKVIQGTY 196 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 F + V+++R + K ++ I+T +AK VGL+D +G L L Sbjct: 197 DMFTQDVAKARGLDIKKRDQFANAHIFTAQQAKDVGLVDSLGVSHNAKMKLILLSGVDD- 255 Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLL 272 ++ + +K L+ S+ L Sbjct: 256 ----PIWNKEDKFDKIMKKLTASTAL 277 >gi|323699943|ref|ZP_08111855.1| signal peptide peptidase SppA, 36K type [Desulfovibrio sp. ND132] gi|323459875|gb|EGB15740.1| signal peptide peptidase SppA, 36K type [Desulfovibrio desulfuricans ND132] Length = 300 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 62/262 (23%), Positives = 120/262 (45%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63 VL I ++ ++ + + + + + G I DS ++ I + D Sbjct: 20 VLMIILAMALITGVMAFFRALGWTPGSLALSGDKIGIVHVEGMILDSSRVVRFIRSLEED 79 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 DS +++ + SPGGS + I+ A++++ KPVI +AAS GY SC + +I A Sbjct: 80 DSVKGVLLRVDSPGGSIAPSQEIYAAVKRLNQVKPVIASYGTVAASGGYYASCPARLIFA 139 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 S+ SIGV+ ++ V ++K G+ + + + KA +P + + M ++ Sbjct: 140 NSGSITASIGVMAEFVTVADAMEKFGIRPEVLTTGKFKAAGTPLRNLTDAQREQMLGLMQ 199 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 + FV V+E+R + + ++DGR TG +A +GLID +G Q + + L Sbjct: 200 DLHDQFVDDVAEARGMERARIAAIADGRAVTGRQALALGLIDRLGTQADAVEELKKETGI 259 Query: 244 QSIRKIKDWNPPKNYWFCDLKN 265 + + + + + +L Sbjct: 260 EGRAAVIEGPVEERTFVQELMG 281 >gi|221201332|ref|ZP_03574371.1| peptidase S49 [Burkholderia multivorans CGD2M] gi|221208812|ref|ZP_03581810.1| peptidase S49 [Burkholderia multivorans CGD2] gi|221171268|gb|EEE03717.1| peptidase S49 [Burkholderia multivorans CGD2] gi|221178600|gb|EEE11008.1| peptidase S49 [Burkholderia multivorans CGD2M] Length = 330 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 121/286 (42%), Gaps = 17/286 (5%) Query: 7 KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 KI R+ + L ++ FS + H A + I G+I +++++ ++ Sbjct: 44 KIFFRFAFLAVFLLFAFALIDFSSDAKFASGGRHTALVTIDGEIAAGTNANAEDINTALD 103 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLIS 115 DD +++ ++SPGGS ++ I+++ KP+ V +M AS GY I+ Sbjct: 104 AAFEDDGTAGVVLRINSPGGSPVQAGMVYDEIRRLRGKYPDKPLYVVVTDMCASGGYYIA 163 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL + KLGV + S K PFS PK Sbjct: 164 SAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFYDPFSPETPKMD 223 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q+++D + F++ V + R +T + G WTG ++ ++GL D G + V + Sbjct: 224 AHAQELLDQVHAQFIKAVKDGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDSVAR 283 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 + + D+ ++ + + L Sbjct: 284 EVIK------APDLVDYTVKESLTNRVARKFGAAVGGAAMKALTAA 323 >gi|254501657|ref|ZP_05113808.1| peptidase, S49 (protease IV) family [Labrenzia alexandrii DFL-11] gi|222437728|gb|EEE44407.1| peptidase, S49 (protease IV) family [Labrenzia alexandrii DFL-11] Length = 328 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 98/298 (32%), Positives = 171/298 (57%), Gaps = 12/298 (4%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66 ++ T V ++ +VYF+ ++++ S H+ARI I G I ++++ +E +E+I + D+ Sbjct: 22 RVATFLVAALVLIGGLVYFAGAANMSKRSAHIARIPIEGMILENRKTLEMLEKIGKSDAV 81 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 +IVS++SPGGS GEAI+ A++K+ +KP++ E+ + SAGYLI+ +++ IVA Sbjct: 82 KGVIVSINSPGGSTTGGEAIYNALRKLSEKKPIVAEMRTIGTSAGYLIAMSADHIVARYN 141 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 ++ GSIGVLFQ+ + L+ +GVS+++VKS+P+KAEP +S P+A M+Q +V SY Sbjct: 142 TITGSIGVLFQFGNFEKLLETVGVSMEAVKSAPLKAEPDFYSPATPEAKAMLQAMVTDSY 201 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 +WFV +++E R++ K L L+DGR+ G A + L+D +GG+E L Sbjct: 202 NWFVDILAERRDLDKSKALELADGRVLLGQRALQEKLVDAIGGEETAVSWLETEKGVAKD 261 Query: 247 RKIKDWNPPK-----------NYWFCDLKNLSISSLLEDTIPLMKQ-TKVQGLWAVWN 292 + W + + L++ L + L+ + + GL +VW Sbjct: 262 LPVITWTTTESIEELPFASRVSREIGKGFGLAVLEPLNEAKGLISRDLMLDGLVSVWQ 319 >gi|296136836|ref|YP_003644078.1| peptidase S49 [Thiomonas intermedia K12] gi|295796958|gb|ADG31748.1| peptidase S49 [Thiomonas intermedia K12] Length = 327 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 66/277 (23%), Positives = 111/277 (40%), Gaps = 15/277 (5%) Query: 8 IKTRYVMLSLVTLTVV--YFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60 I R+V+L +V L + PH A I + G+I + + ++ Sbjct: 46 IFFRFVLLGIVALIFFGGMIAEFGSSTATGPHTALIELNGEISIGSQASADNINAALQDA 105 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCAS 118 +I+ ++SPGGS IF I++++ + KPV E+ AS Y ++ A+ Sbjct: 106 FSSPDTRGVILRINSPGGSPVQASQIFAEIERLRAKYNKPVYAVCEEVCASGAYYVAAAA 165 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 N I SLVGSIGVL +DKLGV+ + + + K PF+ + Sbjct: 166 NDIYVNPASLVGSIGVLMDGFGFSGLMDKLGVTRRLLTAGANKGFMDPFTPMPEDQKTYA 225 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 +++ + F+ V + R G +WTG A K GL D G +++ + Sbjct: 226 LGMLEQIHKQFIAAVEKGRGARLKVNDETFSGLVWTGESAVKQGLADGYGDVDQIARDKI 285 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 +I D+ +N K S + Sbjct: 286 K------APEIVDYTVQENVAERLAKRFGASLGMGAV 316 >gi|73541958|ref|YP_296478.1| peptidase S49 [Ralstonia eutropha JMP134] gi|72119371|gb|AAZ61634.1| Peptidase S49 [Ralstonia eutropha JMP134] Length = 394 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 67/289 (23%), Positives = 119/289 (41%), Gaps = 14/289 (4%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIERIS 61 + + + LV V+ + H A +++ G+I ++ + ++ Sbjct: 111 FFRFAVLGILLVVFFAVFDFKGDSGIGSGRHTAMVSLDGEIAAGTPASAESINASLQAAF 170 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCAS 118 D +A +I+ ++SPGGS I I ++ KP V E+ AS GY ++ A+ Sbjct: 171 ADSNAAGVILKINSPGGSPVQAGIINDEIHRLRTLYPSKPFYVVVEEICASGGYYVAAAA 230 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I + S+VGSIGVL +DKLGV + S K PFS P+ Sbjct: 231 DKIYVDKASIVGSIGVLMDGFGFTGLMDKLGVERRLYTSGANKGMLDPFSPQVPRQKAYA 290 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 + ++ + F+ +V E R L G W+G + ++GL D +G + V + L+ Sbjct: 291 ETMLKEIHQQFIDVVKEGRGDRLKSDPELFSGLFWSGERSVELGLADGLGSADYVARDLF 350 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 I D+ +N K + ++ T +QG+ Sbjct: 351 K------AEDIVDYTVKENIAERVAKRFGAAVGTAAMKTMLWSTGMQGM 393 >gi|52548335|gb|AAU82184.1| periplasmic serine protease [uncultured archaeon GZfos11A10] Length = 381 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 70/266 (26%), Positives = 128/266 (48%), Gaps = 14/266 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVE---DNSPHVARIAIRGQI-----------ED 49 I +M++++ +++ S + +A + ++G + Sbjct: 87 FFSYIILVLLMITIIGVSLALILGGSDLPGLYSTGDQIAVVYVQGVMITGGLPDGFGFAT 146 Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 S+ + + I + D S A+++ ++SPGGS A + I I+K K+ KPV+ + ++AAS Sbjct: 147 SESICKNIRLAADDTSVKAIVLRVNSPGGSPAAAQEIAHEIKKAKSEKPVVVSMGDVAAS 206 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A Y IS ++ I+A ++ GSIGV++ + + D+ G+ KS K + Sbjct: 207 AAYYISAPTDRIIANPDTITGSIGVIWIFENKSGYYDEEGIEHWVAKSGEFKDMGGDWRN 266 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 + K ++VV ++ FV V+ RN+ ++ L LSDGR++TGA+A +GL+D G Sbjct: 267 LTEKEKIYAEEVVMDAFSRFVDEVAVGRNMSREQVLNLSDGRVYTGADAIDLGLVDETGN 326 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPP 255 + LG +IK N P Sbjct: 327 IYDAIDIAAELGNCTGEPEIKYMNKP 352 >gi|261856346|ref|YP_003263629.1| signal peptide peptidase SppA, 36K type [Halothiobacillus neapolitanus c2] gi|261836815|gb|ACX96582.1| signal peptide peptidase SppA, 36K type [Halothiobacillus neapolitanus c2] Length = 350 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 82/292 (28%), Positives = 137/292 (46%), Gaps = 22/292 (7%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDN------SPHVARIAIRGQI-----EDSQELIE 55 ++ R + L+LV + + S S ++D+ P I I G I ++E+I Sbjct: 61 RVFFRLISLALVIWIIAWISLSGDLDDDHGVVIKQPSAGIIDISGVIAAGQEASAEEIIP 120 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGY 112 +E+ ++ +++ +++PGGS IF AI +++ KPV V ++ AS GY Sbjct: 121 VLEKAFKNTQIKGIVLRMNTPGGSPVQSGEIFDAIMRLRKEYPAKPVYAVVEDVCASGGY 180 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 I+ A++ I A + SLVGSIGV + KLG+ + + S KA PFS NP Sbjct: 181 YIAAAADKIFANQASLVGSIGVRMDSFGFVDAMQKLGIESRLITSGANKAMLDPFSPENP 240 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 VQ MQ+++D + F+ V + R L G I+TGA+A+K GLID +G Sbjct: 241 AQVQYMQNLLDQVHQQFIDAVKKGRGKRLANDPDLFSGLIYTGAQAQKNGLIDGLGTVRS 300 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 V + L + D P K+ + L S+ + ++ + + Sbjct: 301 VVRDELHLKNE------VDLTPSKSPFEELLGK--TSTQISQSLTSLWAANL 344 >gi|332708205|ref|ZP_08428195.1| serine peptidase, MEROPS family S49 [Lyngbya majuscula 3L] gi|332353031|gb|EGJ32581.1| serine peptidase, MEROPS family S49 [Lyngbya majuscula 3L] Length = 605 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 67/251 (26%), Positives = 122/251 (48%), Gaps = 9/251 (3%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSP 76 S S + +A I G I D + +++ + D A+++ ++SP Sbjct: 307 SPYSKNRKSKHKIAIIYAEGSIVDGQGNFEQVGGERFAKQLRELRLDKDIKAVVLRVNSP 366 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GGSA A E I R ++ ++ KPVI + +AAS GY IS S+ I A ++ GSIGV Sbjct: 367 GGSATASEIIQREVRLIREEKPVIVSMGNVAASGGYWISTYSDRIFAEPNTITGSIGVFG 426 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 ++ + G++ V++ + S + + + Q +V+ Y F+ V+ES Sbjct: 427 VLFNIQELANNNGLTWDIVQTGSLADIQSTVRPKTDQELAIYQTMVNQIYDQFIDKVAES 486 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R +P K ++ GR+W+G +AK++GL+D +GG + + + K++++ Sbjct: 487 RKLPKGKVKDIAQGRVWSGIDAKQIGLVDEIGGINDAIKHAAKQAKLKDDWKVEEYPKIP 546 Query: 257 NYWFCDLKNLS 267 ++ LK LS Sbjct: 547 SFEEMILKTLS 557 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 106/243 (43%), Gaps = 11/243 (4%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQ---IEDSQELIERIERISRDDSATALIVS 72 LV V S ++ S + + + GQ I +++++ +++ ++D AL + Sbjct: 51 VLVFDLSVNISDTNPTSSTSEVIEEV-LSGQQTNIIPLRKVLDTLDKATKDKRIVALYLD 109 Query: 73 LSSP----GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 S+ + + A+++ + I Y +S ++ I+ + Sbjct: 110 GSASKTVGNTGLANLKEVREALERFRAAGKKIIAYDVDLGEREYYLSSVADTIILNPMGV 169 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSY 186 V G+ ++ L K G+ ++ V+ K+ PF +++P++ + ++++D + Sbjct: 170 VEINGLNSAQLFLTGALQKYGIGVQVVRVGKYKSAVEPFLLKQLSPESREQTRELLDDLW 229 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 F+ V +SR I +++ + + +EAK GL+D VG +EV +L L ++ Sbjct: 230 DEFLTTVGKSREITPKTLQAIANTKGMLIASEAKTQGLVDQVGYFDEVIATLKELTGEKK 289 Query: 246 IRK 248 K Sbjct: 290 KDK 292 >gi|194290172|ref|YP_002006079.1| signal peptide peptidase, s49 family [Cupriavidus taiwanensis LMG 19424] gi|193224007|emb|CAQ70016.1| Putative signal peptide peptidase, S49 family [Cupriavidus taiwanensis LMG 19424] Length = 398 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 73/292 (25%), Positives = 122/292 (41%), Gaps = 17/292 (5%) Query: 7 KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 +I R V +L L+ V F + + H A + + G+I ++ + ++ Sbjct: 112 RIFFRLVTLGLLVLILFAVFDFKGDGTITASGRHTAMVTLEGEIAAGTPASAEAINASLQ 171 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLIS 115 D +A +I+ ++SPGGS I I ++ KP+ V E+ AS GY ++ Sbjct: 172 AAFADSNAAGVILKINSPGGSPVQAGIINDEIHRLRGLYPSKPLYVVVEEICASGGYYVA 231 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL +DKLGV + S K PFS PK Sbjct: 232 AAADKIYVDKASIVGSIGVLMDGFGFTGLMDKLGVERRLYTSGANKGMLDPFSPQVPKQK 291 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 + ++ + F+ +V E R L G W+G + +GL D +G E V + Sbjct: 292 AFAEAMLKQIHQQFIDVVKEGRGDRLKDDPELFSGLFWSGERSVALGLADGLGSAEYVAR 351 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 L+ I D+ +N K + ++ T +QG+ Sbjct: 352 DLFK------AEDIVDYTVKENIAERVAKRFGAAVGTAAMKTMLWSTGMQGM 397 >gi|296447328|ref|ZP_06889256.1| signal peptide peptidase SppA, 36K type [Methylosinus trichosporium OB3b] gi|296255193|gb|EFH02292.1| signal peptide peptidase SppA, 36K type [Methylosinus trichosporium OB3b] Length = 325 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 83/275 (30%), Positives = 147/275 (53%), Gaps = 11/275 (4%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 SPH+AR+++ G I +E ++ ++ I D A+A+++++ SPGG+ E + Sbjct: 46 GPAAKLSPHIARLSVSGIITGDKETLDLVKSIGEDAKASAVLLAIDSPGGTTTGAERLHD 105 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 ++++ +KPV+ V +AAS GY+ + A++ IVA SLVGSIGVLFQ+P V LD + Sbjct: 106 ELRRLAAKKPVVAVVGTLAASGGYIAAIAADEIVAHGNSLVGSIGVLFQFPNVGKLLDNV 165 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 GV +++VKSSP+KA P+ F + +A + +V SY WF LV E R + + ++ Sbjct: 166 GVQMETVKSSPLKAAPNGFEPTSEEARAAIAALVADSYDWFKGLVKERRKLDDSELAKVT 225 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL-- 266 DGR++T + + L+D++GG+ E + L + DW L + Sbjct: 226 DGRVFTARQGLPLKLVDLIGGEREAIEWLETEKGVAKRLPVVDWKKKNAIERFGLVDSAA 285 Query: 267 ---------SISSLLEDTIPLMKQTKVQGLWAVWN 292 +++ L+ + ++ + G+ A+W Sbjct: 286 GVAAALGLDALAQALQRVGTVAERGLLDGVVAIWQ 320 >gi|289624530|ref|ZP_06457484.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649341|ref|ZP_06480684.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. aesculi str. 2250] gi|330869275|gb|EGH03984.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 332 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 18/291 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61 K V + V + S H A I ++G I D ++ ++ +++ Sbjct: 49 FFKLLTFAFLFVAVVVPMLDFEGGTSRRSSHTALIDVQGVIADKESASAENIVTALQKAF 108 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118 D+ +I+ ++SPGGS ++ I++++ KP I + AS Y I+ A+ Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAAKPDIKVYAVITDLGASGAYYIASAA 168 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I A + SLVGSIGV +DKLGV ++ S KA PF Q Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLYPFQPQKADETQFW 228 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q V+D+++ F+ V + R L G IWTG +A +GL+D +G V + Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKDHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + I ++ ++ + K L S + + I ++ L Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFSGPSL 331 >gi|152985915|ref|YP_001347560.1| putative peptidase [Pseudomonas aeruginosa PA7] gi|150961073|gb|ABR83098.1| probable peptidase [Pseudomonas aeruginosa PA7] Length = 326 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 69/294 (23%), Positives = 127/294 (43%), Gaps = 19/294 (6%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-----ELIERIE 58 K + Y+ + L+ + + S H A I ++G I D + ++ + Sbjct: 41 FFKSLTFLYLFVVLLAFS-PFASLEKSASRGGSHTALIEVKGMIADDEPASADNIVTALR 99 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV---HEMAASAGYLIS 115 D+ +++ ++SPGGS I+ I++++ P + ++ AS Y I+ Sbjct: 100 AAFEDEGTKGIVLRINSPGGSPVQSGYIYDEIRRLRGEHPNVKVYAVISDLGASGAYYIA 159 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I A + SLVGSIGV L+KLGV + S K+ PF P+ Sbjct: 160 SAADQIYADKASLVGSIGVTAASFGFVGTLEKLGVERRVYTSGEHKSFLDPFQPQKPEET 219 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKT--LVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 Q Q V+D+++ F+ V + R L G +W+G +A ++GLID +G V Sbjct: 220 QFWQQVLDTTHKQFIDSVKKGRGDRLKVDGHPELFSGLVWSGEQALQLGLIDGLGNASYV 279 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + +KI+D+ ++ + K S + + + L + L Sbjct: 280 AREVVK------EKKIEDYTVQESPFDRFAKKFGAS--VAERLALWMGWQGPVL 325 >gi|303245615|ref|ZP_07331898.1| signal peptide peptidase SppA, 36K type [Desulfovibrio fructosovorans JJ] gi|302492878|gb|EFL52743.1| signal peptide peptidase SppA, 36K type [Desulfovibrio fructosovorans JJ] Length = 311 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 65/285 (22%), Positives = 128/285 (44%), Gaps = 4/285 (1%) Query: 10 TRYVMLSLVTLTVVYFSWSSHVED----NSPHVARIAIRGQIEDSQELIERIERISRDDS 65 +++ + F P + + I G I +++++ I ++ D S Sbjct: 23 AAVILVLGIAAACGVFGHDEEGGSLLGAAEPRIGVVRIEGPIVAAEDVVAFIRKLREDKS 82 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 +++ ++SPGG+ + ++ A++K++ KPV+ +AAS GY +C + I A Sbjct: 83 VKGVVLRVNSPGGAFGPSQEMYMAVKKLRAVKPVVASFSAVAASGGYYAACPAGRIFANP 142 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 ++ GSIGV+ Q+ V+ L KLG+ +S+ + +K SPF + ++ ++D Sbjct: 143 GTITGSIGVMTQFANVRDLLQKLGIDFESLTTGKLKDAGSPFKPLTDDQRAYLKGLIDDL 202 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 F V++ R + D ++DGR TGA A ++GL+D +GGQEE L Sbjct: 203 NKQFSGDVAKQRKLAKDAIAAIADGRAMTGARALELGLVDELGGQEEAVDYLKKETGLTG 262 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + K L + L + +++ + ++ Sbjct: 263 DVPLLKGPKKKTSLLEKLSSSLSLPDLRGMALVTVLSELANVQSL 307 >gi|146282967|ref|YP_001173120.1| putative peptidase [Pseudomonas stutzeri A1501] gi|145571172|gb|ABP80278.1| putative peptidase [Pseudomonas stutzeri A1501] gi|327481318|gb|AEA84628.1| putative peptidase [Pseudomonas stutzeri DSM 4166] Length = 327 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 66/298 (22%), Positives = 127/298 (42%), Gaps = 24/298 (8%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP------HVARIAIRGQIED-----SQELI 54 ++ + +L+ + L +S ++ H A I +RG I D + ++ Sbjct: 37 RRWGIFFKLLTFIYLFGALALFSPALQLGKGKAARESHTAVINVRGMIADEESASADNIV 96 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAG 111 + D + +I+ ++SPGGS I+ I++++ P I + AS Sbjct: 97 GALRAAFEDANTKGVILRINSPGGSPVQSGYIYDEIRRLRGEYPAIKVYAVITDLGASGA 156 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I A ++SLVGSIGV ++KLGV + + KA PF Sbjct: 157 YYIASAADEIYADKSSLVGSIGVTAATFGFVDTMEKLGVERRVYTAGEHKAFLDPFQPEK 216 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--LVLSDGRIWTGAEAKKVGLIDVVGG 229 P+ + + V+ +++ F+ V R L G IW+G +A ++GL+D +G Sbjct: 217 PEETRFWRSVLATTHQQFIDSVKRGRGERLQDAQHPELFSGLIWSGEQALELGLVDGLGS 276 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 V + + +I D+ ++ + K L S + + + ++ + L Sbjct: 277 TAYVAREVVG------EPEIVDFTVKESPFDRFTKKLGTS--VAERLAILAGLQGPAL 326 >gi|254470780|ref|ZP_05084183.1| protease IV [Pseudovibrio sp. JE062] gi|211959922|gb|EEA95119.1| protease IV [Pseudovibrio sp. JE062] Length = 302 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 101/276 (36%), Positives = 160/276 (57%), Gaps = 12/276 (4%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 + + H+ARI I G I + +E +E I++DD+ +IVS++SPGG+ GEA++ Sbjct: 11 GELARSEKHIARIEISGPITYDRRQLEMLEAIAKDDTVQGVIVSINSPGGTTSGGEALYN 70 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 A++K+ +KPV + + ASA YL + AS+ +VA TSL GSIGVLFQY K LDK+ Sbjct: 71 ALRKIAEKKPVTASITTLGASAAYLSAIASDHLVAQYTSLTGSIGVLFQYGNAKGLLDKI 130 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 GV + ++KS+P+KAEP+ + P+ + +QD++D +Y WFV LV+E R + ++ L L+ Sbjct: 131 GVEMDAIKSAPLKAEPNFYEPATPEVKEALQDIIDDTYMWFVGLVAERRGLSQERALQLA 190 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN----------- 257 +G+++TG +AK + LID +GG++ Q L S KI DW P + Sbjct: 191 NGQVYTGHQAKGLELIDEIGGEQAAHQWLIEKKGLSSDLKIIDWKPESDERTLPFPANLL 250 Query: 258 YWFCDLKNLSISSLLEDTIPLMK-QTKVQGLWAVWN 292 + I SLL+ ++ + GL +VW Sbjct: 251 GFLGSENQNLIHSLLKTAKSVVDSSLPLDGLVSVWQ 286 >gi|330975218|gb|EGH75284.1| peptidase S49, SppA [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 332 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 18/291 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61 K V + V + S H A I ++G I D ++ ++ +++ Sbjct: 49 FFKLLTFAFLFVAVIVPMLDFEGGTSRRSSHTALIDVQGVIADKEAASAENIVNALQKAF 108 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118 D+ +I+ ++SPGGS ++ I++++ KP I + AS Y I+ A+ Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRATKPDIKVYAVITDLGASGAYYIASAA 168 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I A + SLVGSIGV +DKLGV ++ S KA PF Q Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q V+D+++ F+ V + R L G IWTG +A +GL+D +G V + Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKEHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + I ++ ++ + K L S + + I ++ L Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 331 >gi|91205551|ref|YP_537906.1| Signal peptide peptidase SppA, 36K type [Rickettsia bellii RML369-C] gi|157827267|ref|YP_001496331.1| Signal peptide peptidase SppA, 36K type [Rickettsia bellii OSU 85-389] gi|91069095|gb|ABE04817.1| Signal peptide peptidase SppA, 36K type [Rickettsia bellii RML369-C] gi|157802571|gb|ABV79294.1| Signal peptide peptidase SppA, 36K type [Rickettsia bellii OSU 85-389] Length = 307 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 82/296 (27%), Positives = 153/296 (51%), Gaps = 14/296 (4%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSH----------VEDNSPHVARIAIRGQIEDSQELI 54 K+IK R ++ L+ + ++ S+ +N ++A + I I + ++ Sbjct: 11 RKQIKARLLVWKLIAIILIGVSFFLICKDFVPTEVLANNNDDYIASVLIDDIILEDEKRD 70 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 +++++I D ALIV+++SPGG+ E I+ + K+ +KPV+ + MAAS GYLI Sbjct: 71 KKLKKIVDDSHIKALIVNVNSPGGTVVGSEKIYNILLKISEKKPVVIVMGTMAASGGYLI 130 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 S A + I++ ++ GSIGV+ Q V KLG++ + KS +KA P+P ++ Sbjct: 131 SLAGDYIISHNGTITGSIGVILQTAEVTDLAQKLGITFLNFKSGELKAAPNPTEKLTENV 190 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 + + ++ +Y++F+ LV+E R IP D+ L+DGRI++G +A K+ L+D +G ++ Sbjct: 191 RVAVMENIEDTYNFFIELVAERRKIPIDEVKKLADGRIYSGRQAVKLKLVDNIGNEDTAL 250 Query: 235 QSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + L + IKD+ ++ SL+ P + G+ A+ Sbjct: 251 KWLQDEKKIDAKLTIKDYQLKPKPKLVEMMLEDFDSLV----PSFFKNSFNGIKAI 302 >gi|298486214|ref|ZP_07004277.1| Probable peptidase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159221|gb|EFI00279.1| Probable peptidase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 332 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 18/291 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61 K V + V + S H A I ++G I D ++ ++ +++ Sbjct: 49 FFKLLTFAFLFVAVVVPMLDFEGGTSRRSSHTALIDVQGVIADKESASAENIVTALQKAF 108 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118 D+ +I+ ++SPGGS ++ I++++ KP I + AS Y I+ A+ Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAAKPDIKVYAVITDLGASGAYYIASAA 168 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I A + SLVGSIGV +DKLGV ++ S KA PF Q Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q V+D+++ F+ V + R L G IWTG +A +GL+D +G V + Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKDHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + I ++ ++ + K L S + + I ++ L Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 331 >gi|330973864|gb|EGH73930.1| peptidase S49, SppA [Pseudomonas syringae pv. aceris str. M302273PT] Length = 332 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 18/291 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61 K V + V + S H A I ++G I D ++ ++ +++ Sbjct: 49 FFKLLTFAFLFVAVIVPMLDFEGGTSRRSSHTALIDVQGVIADKEAASAENIVTALQKAF 108 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118 D+ +I+ ++SPGGS ++ I++++ KP I + AS Y I+ A+ Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRATKPDIKVYAVITDLGASGAYYIASAA 168 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I A + SLVGSIGV +DKLGV ++ S KA PF Q Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q V+D+++ F+ V + R L G IWTG +A +GL+D +G V + Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKDHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + I ++ ++ + K L S + + I ++ L Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 331 >gi|91784726|ref|YP_559932.1| family S49 unassigned peptidase [Burkholderia xenovorans LB400] gi|91688680|gb|ABE31880.1| Family S49 unassigned peptidase [Burkholderia xenovorans LB400] Length = 334 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 68/289 (23%), Positives = 122/289 (42%), Gaps = 16/289 (5%) Query: 7 KIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIER 59 +I R+V L ++ L + V H A + + G+I +++++ +E Sbjct: 50 RIFFRFVFLVILLLAIWAAIDFSGDKVAATGRHTAMVTLDGEISADTNANAEDINTALES 109 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV---ITEVHEMAASAGYLISC 116 D +I+ +SPGGS I+ I++++ + P V +M AS GY + Sbjct: 110 AFDDAGTAGVILRCNSPGGSPVQAGIIYDEIRRLRAKYPSVPLYAVVGDMCASGGYYAAA 169 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 A++ I + S+VGSIGVL +DKLG+ + S K PFS PK + Sbjct: 170 AADKIYVDKASIVGSIGVLMDSFGFTGLMDKLGIQRRLHTSGENKGFFDPFSPETPKMDE 229 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 QD++D + F+ V + R +T + G WTG ++ ++GL D G + V + Sbjct: 230 HAQDMLDQIHAQFIDAVRQGRGKRLHETPDMFSGLFWTGQKSVELGLADGFGDTDYVARD 289 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 L+ I D+ ++ + + + K+ Sbjct: 290 LFK------APDIVDYTVKESITDRVARKFGAAVGSGAVHAMALGGKLN 332 >gi|150024502|ref|YP_001295328.1| protease IV (signal peptide peptidase) [Flavobacterium psychrophilum JIP02/86] gi|149771043|emb|CAL42510.1| Protease IV (signal peptide peptidase) [Flavobacterium psychrophilum JIP02/86] Length = 587 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 63/253 (24%), Positives = 123/253 (48%), Gaps = 10/253 (3%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSS 75 + S+ + +A I +G+I + + ++ +DD+ A+++ ++S Sbjct: 291 IATSTSDSNTKDKIAVIYAQGEIGSGEGDINTVGEGSMRRSLQEARKDDNIKAIVLRVNS 350 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 PGGSA + I+R I+ K KPVI + +AAS GY I+C +N I A +++ GSIGV Sbjct: 351 PGGSALTSDLIWREIEITKKVKPVIVSMGNLAASGGYYIACNANKIFAEASTITGSIGVF 410 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 P + K G++ + V++ + S F + Q+ Q+ V+ Y+ FV V++ Sbjct: 411 GTLPNLSAVTKKYGINTELVETHENASGYSLFKPLEDNFRQITQEGVEHIYNVFVTRVAK 470 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 R + + + ++ GR+W G++A ++GL+D +GG ++ L + D+ Sbjct: 471 GRKMTFAQVDAIAQGRVWAGSDALRLGLVDKIGGLDDALAYASNLVKLKE-YSTVDYPKY 529 Query: 256 KNYWFCDLKNLSI 268 + + + Sbjct: 530 EKDFKELFSGSGL 542 Score = 97.0 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 101/276 (36%), Gaps = 25/276 (9%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQ------------IEDSQ--- 51 + ++ + ++ S+ V + + I + Sbjct: 15 FVFCMLFFFGILFIAAIFGGGSATTFVEDNSVLELNLEEVTNDYGGKFNFAEIGYYEAKH 74 Query: 52 ----ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 ++++ I+ DD + + ++ +A+ ++ K I + Sbjct: 75 DGLTDILKAIDAAKTDDKIKGISILNNTLALGVAQTKALRDELEIFKKSGKFIMAYGNVY 134 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 + Y ++ +N + + G+ + Y K F DK G+ ++ ++ K+ PF Sbjct: 135 SQKDYYLNSVANTVYLNPVGELDFKGLSTEVMYYKDFQDKTGLKMEVIRHGKYKSAVEPF 194 Query: 168 --SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGAEAKKVGLI 224 +E++P+ + + S ++ V +S+SR I + ++ G + T A K LI Sbjct: 195 LLNEMSPENRDQITTFLTSIWNSMVNDISKSRKISIAQLNTIATGLLARTPELALKNKLI 254 Query: 225 DVVGGQE---EVWQSLYALGVDQSIRKIKDWNPPKN 257 D + ++ + + + ++ + + + ++ Sbjct: 255 DKIAYEDVYHDDIRKALKVAANEDYKTVNIIDYAQD 290 >gi|289671962|ref|ZP_06492852.1| peptidase S49, SppA [Pseudomonas syringae pv. syringae FF5] Length = 332 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 18/291 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61 K V + V + S H A I ++G I D ++ ++ +++ Sbjct: 49 FFKLLTFAFLFVAVIVPMLDFEGGTSRRSSHTALIDVQGVIADKEAASAENIVTALQKAF 108 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118 D+ +I+ ++SPGGS ++ I++++ KP I + AS Y I+ A+ Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRATKPDIKVYAVITDLGASGAYYIASAA 168 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I A + SLVGSIGV +DKLGV ++ S KA PF Q Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q V+D+++ F+ V + R L G IWTG +A +GL+D +G V + Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKEHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + I ++ ++ + K L S + + I ++ L Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 331 >gi|330985586|gb|EGH83689.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. lachrymans str. M301315] Length = 332 Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 124/291 (42%), Gaps = 18/291 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61 K V + V + S H A I ++G I D ++ ++ +++ Sbjct: 49 FFKLLTFAFLFVAVVVPMLDFEGGTSRRSSHTALIDVQGVIADKESASAENIVTALQKAF 108 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118 D+ +I+ ++SPGGS ++ I++++ KP I + AS Y I+ A+ Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAAKPDIKVYAVITDLGASGAYYIASAA 168 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I A + SLVGSIGV +DKLGV ++ S KA PF + Q Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKAEETQFW 228 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q V+D+++ F+ V + R L G IWTG +A +GL+D +G V + Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKDHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + I ++ ++ + K L S + + I ++ L Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 331 >gi|126663145|ref|ZP_01734143.1| putative protease IV [Flavobacteria bacterium BAL38] gi|126624803|gb|EAZ95493.1| putative protease IV [Flavobacteria bacterium BAL38] Length = 588 Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 68/286 (23%), Positives = 138/286 (48%), Gaps = 13/286 (4%) Query: 17 LVTLTVVYFSWSSHVE--DNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDS 65 +V++T +S VE +A I +G+I + + ++ DD Sbjct: 281 IVSITDYAQKAASTVEDYSKEDIIAVIYAQGEIAGGEGDVNIIGEGSINRSLKEAREDDD 340 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 A+++ ++SPGGSA E I+R I+ K KPV+ + AAS GY I+ ++ I A Sbjct: 341 VKAIVLRVNSPGGSALTSELIWREIEITKKVKPVVVSMGNYAASGGYYIAANADRIFAEP 400 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 ++ GSIGV P + +G++ + VK+ + S F ++ + + ++ Sbjct: 401 NTITGSIGVFGMLPNMSQLSKNIGINAEQVKTHENASGYSIFEPIDENFKGFVLESIEKI 460 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y F++ V++ R + ++ +++ GR+WTG +A K+GL+D +GG + + LG + Sbjct: 461 YATFLKRVADGRKMTTEQVDLIAQGRVWTGIDAHKLGLVDEIGGLDAAIKYAAKLGK-TN 519 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM-KQTKVQGLWAV 290 + +++ + + L N + ++ + L+ +Q +G + Sbjct: 520 SYRTENFPEYEKSFEDMLANFTGMAMFKTKEQLLKEQLGEEGFQML 565 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 80/203 (39%), Gaps = 3/203 (1%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 +++ IE D+ + + + +A+ + + K + + Sbjct: 76 GVTDILNAIEAAKNDNKIKGISILNNQSQLGLAQSKAVRDKLDEFKKSGKFVYSYSNGYS 135 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167 Y ++ ++ + + G+ + Y+K +K GV ++ ++ K+ P+ Sbjct: 136 QGEYYLNSVADQVYLNPMGEIDFKGLSAEILYMKELQEKAGVKMEVIRHGKFKSAVEPYL 195 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLID 225 E++P+ + M +++S ++ V +S+SR + + +++ T A LID Sbjct: 196 AQEMSPENREQMTVLLNSVWNTIVTDISKSRKLSIAQLDAIANSLGARTPELALANKLID 255 Query: 226 VVGGQEEVWQSLYALGVDQSIRK 248 + ++E ++ A K Sbjct: 256 KIAYEDEYHDAIRAKLKLDKKEK 278 >gi|225010434|ref|ZP_03700905.1| signal peptide peptidase SppA, 67K type [Flavobacteria bacterium MS024-3C] gi|225005263|gb|EEG43214.1| signal peptide peptidase SppA, 67K type [Flavobacteria bacterium MS024-3C] Length = 586 Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 10/270 (3%) Query: 26 SWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSP 76 S + + ++A + +G+I + IE IE + S A+++ ++SP Sbjct: 291 SATKRPYSSKENIAVVYAQGEILYGQGNADYIGQELTIEGIEAAVENSSVKAIVLRVNSP 350 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GGSA + I+ AI+K K KPV+ + ++AAS GY I+ +N I A+ ++ GSIGV Sbjct: 351 GGSALVSDLIWHAIEKAKAVKPVVVSMGDVAASGGYYIAAGANKIFASPATITGSIGVFG 410 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 P + + GV+ + V + A S F ++ K + ++ +Y F+ VS Sbjct: 411 VLPNMSQLAKEWGVNAQEVATHDNGATYSVFRPMSEKFKALTVQSIEDTYQTFLSRVSSG 470 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R + D+ L+ GR+WT A GLID +G + LG I+++ K Sbjct: 471 RGMTVDQVDALAQGRVWTAEAALAGGLIDGIGDLDVAIAEAALLGGASD-YGIRNYPKYK 529 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + + +++LS S ++ + Q + Sbjct: 530 SPFEQLIEDLSGVSTSIKSLASLSQNHLDA 559 Score = 78.9 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 32/258 (12%), Positives = 85/258 (32%), Gaps = 25/258 (9%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-------------------E 48 + ++ + V + +G + Sbjct: 16 VAFGVAFFMFFSIITALSDMEPQTVIGNKVVLELDFQGSVKDRVVDQSQDPFGAFGNPQM 75 Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 +++ IE D + + + +AI A+ K + E Sbjct: 76 GLDQILLAIEVAKEDSRVQGISIRNAYFMAGWSQVKAIRDALSDFKTSGKKVFSYAEFYD 135 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167 Y ++ ++ I T +V G+ + ++K F DK G+ ++ ++ K+ +P+ Sbjct: 136 QKDYYLASVADSIFLTPTGIVDLKGLSSEVLFLKDFQDKSGLKMEVIRHGKYKSAVAPYL 195 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLID 225 +E+ + ++D + + +++ R++ + T +A + G ID Sbjct: 196 DNEMGVAQKTQLTALLDGLWQVMAQDMAQDRSMTLAQLNGFVTAMGAGTPLKALENGFID 255 Query: 226 VVGGQEE---VWQSLYAL 240 + ++E + + L Sbjct: 256 GLLYEDEYDLALKKAFDL 273 >gi|91974675|ref|YP_567334.1| signal peptide peptidase SppA, 36K type [Rhodopseudomonas palustris BisB5] gi|91681131|gb|ABE37433.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49 [Rhodopseudomonas palustris BisB5] Length = 326 Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 89/275 (32%), Positives = 155/275 (56%), Gaps = 15/275 (5%) Query: 33 DNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 S +ARI I G I + E +E +ER+ + SA A+IV ++SPGG+ E ++ A+ + Sbjct: 49 ATSSSIARIKIDGLIRSNSERVEALERLEKSQSA-AVIVHINSPGGTTAGSEELYNALMR 107 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 +K +KP++ V +AAS GY+ + AS+ I+A ++SLVGSIGVLFQYP V + +GV + Sbjct: 108 LKAKKPMVVVVEGLAASGGYIAALASDHIIAQQSSLVGSIGVLFQYPNVSELMKTVGVKV 167 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 + VKSSP+KA P+ F +P+A ++ +V SY WF +V + R++ ++ V++DGR+ Sbjct: 168 EEVKSSPLKAAPNGFEPTSPEARAALESLVRDSYAWFRDMVKQRRSMDDNQLGVVADGRV 227 Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 +TG +A + LID +G ++ L +S ++D+ + ++ S L Sbjct: 228 FTGRQALGLKLIDELGDEKTAVAWLETEKKIKSGLPVRDFKLSPQFGDLAFLRVAASVTL 287 Query: 273 ED--------------TIPLMKQTKVQGLWAVWNP 293 + + +++ + G+ A+W P Sbjct: 288 DALGLGAIARQIEQSGAVQSVERLGLDGMLALWAP 322 >gi|257487556|ref|ZP_05641597.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331012625|gb|EGH92681.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 332 Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 18/291 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61 K V + V + S H A I ++G I D ++ ++ +++ Sbjct: 49 FFKLLTFAFLFVAVVVPMLDFEGGTSRRSSHTALIDVQGVIADKESASAENIVTALQKAF 108 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118 D+ +I+ ++SPGGS ++ I++++ KP I + AS Y I+ A+ Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAAKPDIKVYAVITDLGASGAYYIASAA 168 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I A + SLVGSIGV +DKLGV ++ S KA PF Q Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q V+D+++ F+ V + R L G IWTG +A +GL+D +G V + Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKDHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + I ++ ++ + K L S + + I ++ L Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 331 >gi|330952680|gb|EGH52940.1| peptidase S49, SppA [Pseudomonas syringae Cit 7] Length = 332 Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 18/291 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61 K V + V + S H A I ++G I D ++ ++ +++ Sbjct: 49 FFKLLTFAFLFVAVIVPMLDFEGGTSRRSSHTALIDVQGVIADKEAASAENIVTALQKAF 108 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118 D+ +I+ ++SPGGS ++ I++++ KP I + AS Y I+ A+ Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAAKPDIKVYAVITDLGASGAYYIASAA 168 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I A + SLVGSIGV +DKLGV ++ S KA PF Q Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q V+D+++ F+ V + R L G IWTG +A +GL+D +G V + Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKDHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + I ++ ++ + K L S + + I ++ L Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 331 >gi|254252862|ref|ZP_04946180.1| Periplasmic serine protease [Burkholderia dolosa AUO158] gi|124895471|gb|EAY69351.1| Periplasmic serine protease [Burkholderia dolosa AUO158] Length = 331 Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 123/286 (43%), Gaps = 17/286 (5%) Query: 7 KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 KI R+ + L+ ++ FS + H A + I G+I ++ ++ ++ Sbjct: 45 KIFFRFAFLGVFLLLAFALIDFSSDAKFASGGRHTALVTIDGEIAAGTNANADDINTALD 104 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115 DD +++ ++SPGGS ++ I++++ + KP+ V +M AS GY I+ Sbjct: 105 AAFDDDGTAGVVLRINSPGGSPVQAGMVYDEIKRLRAKYPDKPLYVVVTDMCASGGYYIA 164 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL + KLGV + S K PFS PK Sbjct: 165 SAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFYDPFSPETPKMD 224 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q+++D + F++ V + R +T + G WTG ++ ++GL D G + V + Sbjct: 225 AHAQELLDQVHAQFIKAVKDGRGKRLRETPDMFSGLFWTGEKSVELGLADGYGTTDTVAR 284 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 + + D+ ++ + + L Sbjct: 285 DVLK------APDLVDYTVKESLTNRVARKFGAAVGSAAMKALTAG 324 >gi|254445955|ref|ZP_05059431.1| signal peptide peptidase SppA, 67K type [Verrucomicrobiae bacterium DG1235] gi|198260263|gb|EDY84571.1| signal peptide peptidase SppA, 67K type [Verrucomicrobiae bacterium DG1235] Length = 598 Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 125/283 (44%), Gaps = 14/283 (4%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATAL 69 ++ + + VA I G I + + L I + +DD A+ Sbjct: 295 SMGDYLLDKVKPMYSSDGFVAVIYAEGTIVNGEGNEGQVGGSGLARVIRKARQDDRVKAI 354 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 ++ ++SPGGSA A E I R ++ K + PV+ + +AAS GY IS ++ I A +L Sbjct: 355 VLRVNSPGGSALASEVIQREMRLAKEKMPVVVSMGSVAASGGYWISAYADRIFAQPNTLT 414 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ + + GV+ +VK++ + F + + ++Q VD Y F Sbjct: 415 GSIGVIGVFFNYEELAATHGVNFDTVKTTEHADLMAQFRPKTEREMSLVQRHVDVIYDSF 474 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 + V+E R + + +++GRIW+GA+A ++GL+D +GG E + Sbjct: 475 LAKVAEGRGLELEAVAEIAEGRIWSGADALELGLVDELGGLGEAIAYAGEQADLGEGPAV 534 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + +N+ L +S E ++ L ++ Sbjct: 535 MELPEARNFLQDLLSGVS-----EQAADAKANLALRPLVDLYR 572 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 45/306 (14%), Positives = 105/306 (34%), Gaps = 32/306 (10%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED---------------------- 49 +L ++ V+ + + V + I+D Sbjct: 22 LFILVVILFGVISSMSQPLPQVVNGSVLVFDMSASIQDRPVGMTRDAFIDEAIGGQRLRK 81 Query: 50 --SQELIERIERISRDDSATALIVSLSSP---GGSAYAGE-AIFRAIQKVKNRKPVITEV 103 + L I + DD L+++ S GS +A + A++ + Sbjct: 82 ISLRTLTRGIRAAASDDRIEGLLLTGSFAVEGYGSGFAALKEVHEAVEVFSESGKPVWAY 141 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 + + A++ I +V G+ YPY+ F+ K GV ++ ++ KA Sbjct: 142 VVYPTARDMYVISAADTIYMNPEGVVSDTGMSMSYPYLGGFMKKYGVGVQVTRAGDYKAA 201 Query: 164 PSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKK 220 F ++ + + V++ + ++ +++ I + + + + T +A++ Sbjct: 202 AESFVLEGMSEPSREANAAVLEDFWSEYLSVIANGAGIEAAEYERMLNELGMLTAVDAER 261 Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 +GL+D + +E+ +L + +Y +K + S I + Sbjct: 262 LGLVDELMFTDELIAALRKVSGVDEESNSFRQTSMGDYLLDKVKPMYSSDGFVAVI-YAE 320 Query: 281 QTKVQG 286 T V G Sbjct: 321 GTIVNG 326 >gi|53804454|ref|YP_113935.1| signal peptide peptidase SppA [Methylococcus capsulatus str. Bath] gi|53758215|gb|AAU92506.1| putative signal peptide peptidase SppA [Methylococcus capsulatus str. Bath] Length = 327 Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 64/292 (21%), Positives = 125/292 (42%), Gaps = 22/292 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSH------VEDNSPHVARIAIRGQI-----EDSQELI 54 ++ + + + + H A + + G I D+ +I Sbjct: 40 RRWNLAFRAFLVAAIGLGLVLAFKPLAHDGLTASGKSHTAVVDVTGTIAEGGETDADTII 99 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAG 111 E + + +++ +++PGGS ++ I+++K P V V ++ AS G Sbjct: 100 EGLREAAEAKGVKGIVLRMNTPGGSPVQSAYVYDEIRRIKKEHPALPVYAVVTDVCASGG 159 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I S+VGSIGV+ L+KLGV + + + KA PF V+ Sbjct: 160 YYIASATDRIFVNPASIVGSIGVIMNGFGFVGTLEKLGVERRVMTAGDHKAILDPFGPVD 219 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 P Q +Q ++++ + F+ V R + G +WTGAE ++GL+D VG Sbjct: 220 PVEKQHVQRLLNTVHQQFIAAVKAGRGDRLKDRPEIFSGLVWTGAEGIELGLVDAVGELH 279 Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 EV +++ ++I +++ + ++ L S LE + + + Sbjct: 280 EVAETVIG------AKEIVNYSHRETLLDRVVRQLGTS--LEAALTKLSASS 323 >gi|160900710|ref|YP_001566292.1| peptidase S49 [Delftia acidovorans SPH-1] gi|160366294|gb|ABX37907.1| peptidase S49 [Delftia acidovorans SPH-1] Length = 348 Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 65/279 (23%), Positives = 122/279 (43%), Gaps = 7/279 (2%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISRD 63 + + L LV L V++ ++ +SPH A + ++G+I + ++ + D Sbjct: 70 RLLWTALILVVLWVLFAKDTATTTSSSPHTAVVEVKGEIAAGADASAEFVVAAMRSAFED 129 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNII 121 + A+++ ++SPGGS I I ++K + KP+ V E ASA Y I+ A++ I Sbjct: 130 SGSRAVVLLINSPGGSPVQAGIINDEIVRLKGKYDKPLYAVVEETCASAAYYIAAAADEI 189 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 + S+VGSIGVL ++KLGV + + + K PFS ++ + + Sbjct: 190 FVDKASIVGSIGVLMDGFGFTGAMEKLGVERRLLTAGENKGFLDPFSPMSEGQREHAHKM 249 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 + + F+ +V R +T G WTG +A ++GL D +G + V + + Sbjct: 250 LGQIHSQFINVVKAGRGDRLHETPETFSGLFWTGQQAVEMGLADKLGSLDYVAREVVKAE 309 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 + + F L ++P ++ Sbjct: 310 EVVDYTRRDNVAERLAKRFGAAFGGGAVQALRSSLPALR 348 >gi|302187284|ref|ZP_07263957.1| peptidase S49, SppA [Pseudomonas syringae pv. syringae 642] Length = 332 Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 18/291 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61 K V + V + S H A I ++G I D ++ ++ +++ Sbjct: 49 FFKLLTFAFLFVAVVVPMLDFEGGTSRRSSHTALIDVQGVIADKESASAENIVTALQKAF 108 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118 D+ +I+ ++SPGGS ++ I++++ KP I + AS Y I+ A+ Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAAKPDIKVYAVITDLGASGAYYIASAA 168 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I A + SLVGSIGV +DKLGV ++ S KA PF Q Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q V+D+++ F+ V + R L G IWTG +A +GL+D +G V + Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKEHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + I ++ ++ + K L S + + I ++ L Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 331 >gi|66044886|ref|YP_234727.1| peptidase S49, SppA [Pseudomonas syringae pv. syringae B728a] gi|63255593|gb|AAY36689.1| Peptidase S49, SppA [Pseudomonas syringae pv. syringae B728a] Length = 332 Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 18/291 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61 K V + V + S H A I ++G I D ++ ++ +++ Sbjct: 49 FFKLLTFAFLFVAVIVPMLDFEGGTSRRSSHTALIDVQGVIADKEAASAENIVTALQKAF 108 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118 D+ +I+ ++SPGGS ++ I++++ KP I + AS Y I+ A+ Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAAKPDIKVYAVITDLGASGAYYIASAA 168 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I A + SLVGSIGV +DKLGV ++ S KA PF Q Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q V+D+++ F+ V + R L G IWTG +A +GL+D +G V + Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKDHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + I ++ ++ + K L S + + I ++ L Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 331 >gi|254818384|ref|ZP_05223385.1| hypothetical protein MintA_00577 [Mycobacterium intracellulare ATCC 13950] Length = 595 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 32/298 (10%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED----------------SQELIERIERISRDDSATAL 69 + S P VA I + G I D S + + + DDS +A+ Sbjct: 292 APSVPGRRPKPTVAVINVDGTIVDGRGGPQFLPFGTSTVGSDTIAPALREAAADDSVSAI 351 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSL 128 +V ++SPGGS A E ++R ++K + R KPV+ + +AAS GY I+ A++ +VA+ ++ Sbjct: 352 VVRVNSPGGSVTASETLWREVKKARKRGKPVVASMGSVAASGGYYIAVAADAVVASPATI 411 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIGVL ++ L +LGV +V+++ + + P+ + D Y Sbjct: 412 TGSIGVLTGKLVIRDLLGRLGVGSDTVRTNANADAWAIDTPFTPEQRAHREAEADLLYAD 471 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 FV V++ RN+ D ++ GR+WTGA+A + GL+D +GG + L Sbjct: 472 FVARVADGRNLTKDAVDRVARGRVWTGADALERGLVDELGGFRTALRRAKILAGLDEDAD 531 Query: 249 IKDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW-----------AVW 291 ++ P L+ + ++ L D + + + G+ A+W Sbjct: 532 VRIVTYPGGSLLDMLRPRASSQPAAASLPDALGALLGRTIGGIVDNVERSVSGASALW 589 Score = 89.3 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 77/227 (33%), Gaps = 5/227 (2%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 ++ + I R + D LI + + A + + AI KP + Sbjct: 66 VSLRDTVSAIYRAAEDPRVAGLIARVQLTASPSAAVQELREAIVAFTAAKPSLAWAETYP 125 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPS 165 + Y ++ A + VG IG +++ DK G+ + V K+ Sbjct: 126 GTLSYYLASAFGEVWMQPAGSVGLIGFASNATFLRDAFDKAGIEAEVVARGEYKSAANRF 185 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 + + +++S V SR + L+D EA GL+D Sbjct: 186 TEHGFTEAHREAVTRMLESIREQVWEAVGTSRKLDAAALDALADRAPLLREEAVSSGLVD 245 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 +G ++E + + L + + + N P + + S L+ Sbjct: 246 RIGFRDEAYDRIAELVGVKD---VSEENAPPRLYLSRYAGAARSRLI 289 >gi|163757833|ref|ZP_02164922.1| proteinase IV protein [Hoeflea phototrophica DFL-43] gi|162285335|gb|EDQ35617.1| proteinase IV protein [Hoeflea phototrophica DFL-43] Length = 322 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 103/280 (36%), Positives = 164/280 (58%), Gaps = 12/280 (4%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 + S H+ARI I G I D ++LI+ IE + ++A AL+V +SSPGG+ Y G Sbjct: 35 LAFNLDGPDTGSDHIARIDISGVISDDEDLIDLIEDAASSETAKALVVRISSPGGTTYGG 94 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 E I++A+ + KPV+ +V +AASAGY+I+ +S+ IVA E+S+VGSIGV+FQY + Sbjct: 95 ERIYKALLEAGKSKPVVADVRTLAASAGYMIAASSDHIVAGESSIVGSIGVIFQYAQAQE 154 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L+K+G+ I+ +KS+P+KAEPSPF + + +A M++ +V SY WFV LV+E R + Sbjct: 155 LLNKIGLRIEEIKSAPLKAEPSPFHDTSEEAKAMIRAMVLDSYDWFVDLVTERRGMTRAD 214 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L L+DG I+TG +A GL+D +GG+ E+ L + ++ +I +W + + Sbjct: 215 VLALADGSIFTGRQALGNGLVDAIGGEAEIRAYLESR-DVEADLEIIEWEKQSDPARRLI 273 Query: 264 KNLSISSL---------LEDTIPLMKQ--TKVQGLWAVWN 292 ++ + L D I + + GL +VW Sbjct: 274 GAQAVDLIASYFGVPMRLSDEIDRLSGGKLFLDGLVSVWQ 313 >gi|16080005|ref|NP_390831.1| signal peptide peptidase [Bacillus subtilis subsp. subtilis str. 168] gi|221310897|ref|ZP_03592744.1| signal peptide peptidase [Bacillus subtilis subsp. subtilis str. 168] gi|221315223|ref|ZP_03597028.1| signal peptide peptidase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320141|ref|ZP_03601435.1| signal peptide peptidase [Bacillus subtilis subsp. subtilis str. JH642] gi|221324422|ref|ZP_03605716.1| signal peptide peptidase [Bacillus subtilis subsp. subtilis str. SMY] gi|14548269|sp|O34525|SPPA_BACSU RecName: Full=Putative signal peptide peptidase sppA gi|2293234|gb|AAC00312.1| putative protease [Bacillus subtilis] gi|2635437|emb|CAB14931.1| signal peptide peptidase [Bacillus subtilis subsp. subtilis str. 168] Length = 335 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 71/319 (22%), Positives = 146/319 (45%), Gaps = 42/319 (13%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSS------------------------HVEDNSPHVARI 41 K+ + L + ++++ S S +A + Sbjct: 4 KRWIALVIALGIFGVSIIVSISMSFFESVKGAQTDLTSLTDESQEKTLENGSPSSKIAVL 63 Query: 42 AIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + G I+D+ + ++ +ER D + +++ ++SPGG Y I Sbjct: 64 EVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIH 123 Query: 88 RAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + ++++K +KP+ + MAAS GY IS A++ I A +L GS+GV+ + Sbjct: 124 KKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLA 183 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 DKLG+S +++KS K SP E+ + +MQ +VD+SY FV ++S+ R +P + Sbjct: 184 DKLGISFETIKSGAHKDIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVK 243 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 ++DGR++ G +AKK+ L+D +G ++ ++ D + + +++ L + Sbjct: 244 KIADGRVYDGRQAKKLNLVDELGFYDDTITAMKKDHKDLKNASVISYE--ESFGLGSLFS 301 Query: 266 LSISSLLEDTIPLMKQTKV 284 + + + + I + ++ Sbjct: 302 MGANKMFKSEIDFLNMREI 320 >gi|88607225|ref|YP_504886.1| signal peptide peptidase SppA, 36K type [Anaplasma phagocytophilum HZ] gi|88598288|gb|ABD43758.1| signal peptide peptidase SppA, 36K type [Anaplasma phagocytophilum HZ] Length = 298 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 74/289 (25%), Positives = 155/289 (53%), Gaps = 17/289 (5%) Query: 8 IKTRYVMLSLVTLTVVY------FSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERIS 61 + + ++ + + FS++ +VARI I G I +++ + R+ Sbjct: 18 WRALFFVVLGLLVVFASQVDYSRFSFADIAGGAGGYVARIGIEGTIGRNKDRTALLSRVE 77 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 D S A+++ + SPGG+ E ++R I+ + +KPV+ + +AAS GY+ + A++ + Sbjct: 78 DDSSIKAVVLRIDSPGGTVGDSEELYRQIRAIAEKKPVVAVMGNVAASGGYMTALAADHV 137 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 +A ++ GSIGVL QY V ++LG+++K++K+S +KA SP E++ + +M ++ Sbjct: 138 IANNGTITGSIGVLTQYVGVARIAERLGITLKTIKTSELKASMSPLEEMSKNSEDVMHEL 197 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 + +H+FV +V+E R + ++ ++DGR++TGA+A +V L+D +GG+ E + L + Sbjct: 198 IKDFHHFFVSMVAERRGLSEEEAYKVADGRVYTGAQALQVKLVDELGGEREALEWLKSHH 257 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + + + ++ L + ++ ++ Q L+A+ Sbjct: 258 NIDTEKVVVRDLEYQSRL-----------SLMGGLRMLLESFKQPLYAL 295 >gi|167586612|ref|ZP_02379000.1| peptidase S49 [Burkholderia ubonensis Bu] Length = 330 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 64/272 (23%), Positives = 120/272 (44%), Gaps = 17/272 (6%) Query: 7 KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 KI R+ + L+ ++ FS + + H A + I G+I ++ ++ + Sbjct: 45 KIFFRFAFLGVFLLLAFALIDFSSDAKFSTSGRHTAVVTIDGEIAAGVNANADDINTALN 104 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115 DD +++ ++SPGGS ++ I++++ + KP+ V +M AS GY I+ Sbjct: 105 AAFDDDGTVGVVLQINSPGGSPVQAGMVYDEIKRLRAKYPGKPLYVVVTDMCASGGYYIA 164 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL ++KLG+ + S K PFS PK Sbjct: 165 AAADRIYVDKASIVGSIGVLMDGFGFTGLMNKLGIQRRLHTSGENKGFYDPFSPETPKMD 224 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q ++D + F++ V + R +T + G WTG + ++GL D G + V + Sbjct: 225 THAQALLDQVHAQFIKAVKDGRGARLHETPDMFSGLFWTGEKGVELGLADGFGTTDSVAR 284 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + + D+ ++ + Sbjct: 285 DVLK------APDLVDYTVKESLTNRVARKFG 310 >gi|330962630|gb|EGH62890.1| peptidase S49, SppA [Pseudomonas syringae pv. maculicola str. ES4326] Length = 332 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 16/275 (5%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61 K + V + + + + H A I ++G I D ++ ++ + Sbjct: 49 FFKLLTFVFLFVAVVLPMLDFEGGTSRRASHTALIDVQGVIADKESASAENIVTALRDAF 108 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118 D+ +I+ ++SPGGS ++ I++++ KP I + AS Y I+ A+ Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAEKPDIKVYAVITDLGASGAYYIASAA 168 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I A + SLVGSIGV ++KLGV ++ S KA PF Q Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMEKLGVDRRTYTSGEHKAFLDPFQPQKTDETQFW 228 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q V+D+++ F+ V + R L G IWTG +A +GL+D +G V + Sbjct: 229 QSVLDTTHRQFIASVKQGRGDRLKDKDHPELFSGLIWTGEQAVGLGLVDGLGSASYVARD 288 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 + + I ++ ++ + K L S Sbjct: 289 VIK------EKNIVEYTVEESPFDRFSKKLGASIA 317 >gi|154687074|ref|YP_001422235.1| hypothetical protein RBAM_026460 [Bacillus amyloliquefaciens FZB42] gi|154352925|gb|ABS75004.1| SppA [Bacillus amyloliquefaciens FZB42] Length = 335 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 68/319 (21%), Positives = 145/319 (45%), Gaps = 42/319 (13%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSS------------------------HVEDNSPHVARI 41 K+ + L + ++V+ +A + Sbjct: 4 KRWIALVIALGIFGVSVIASVTVGVLKNIGDTGSDFASLTDDTEEVTLDKGSPGSKIAVL 63 Query: 42 AIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + G IED+ + ++++ER D S +++ ++SPGG Y I Sbjct: 64 EVDGTIEDNGGSAGLLSSGGYDHRSFLKQVERAKEDKSVKGIVLKINSPGGGVYESAEIH 123 Query: 88 RAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + ++++K +KP+ + MAAS GY IS A++ I A+ +L GS+GV+ + Sbjct: 124 KKLEELKKETKKPIYVSMGSMAASGGYYISTAADKIYASPETLTGSLGVIMESVNYSKLA 183 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 D+LG+ +++KS K SP ++ + ++MQ +V+ SY FV ++S+ R++ Sbjct: 184 DELGIKFETIKSGAHKDIMSPTRDMTKEERKIMQTMVNDSYEGFVNVISKGRHMSKADVK 243 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 ++DGR++ G +AKK+GL+D +G ++ ++ + + + + + L + Sbjct: 244 KIADGRVYDGRQAKKIGLVDDLGFYDDTISAMKKDHKNMKNASVITYE--EGFGLGSLFS 301 Query: 266 LSISSLLEDTIPLMKQTKV 284 +S + + + I + ++ Sbjct: 302 MSAAKMFKSEIDFLNMKEL 320 >gi|254491611|ref|ZP_05104790.1| peptidase, S49 (protease IV) family [Methylophaga thiooxidans DMS010] gi|224463089|gb|EEF79359.1| peptidase, S49 (protease IV) family [Methylophaga thiooxydans DMS010] Length = 327 Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 72/270 (26%), Positives = 118/270 (43%), Gaps = 14/270 (5%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERIS 61 + +++L LV ++ F + H A I I G I E ++ I Sbjct: 49 YVFKAFILLYLVAFLILSFKPAGLKTVTDAHTALIDINGVIAADAEANADAVVTGIREAF 108 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV---ITEVHEMAASAGYLISCAS 118 ++A LI+ L++PGGS I I++++ KP V ++ AS GY I+ A+ Sbjct: 109 DSETAKGLILRLNTPGGSPVQAGIINDEIRRLQKEKPDFPVYAVVQDVCASGGYYIAVAA 168 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I A + S+VGSIGV ++K+GV +S+ + KA PF + V Sbjct: 169 DEIYADKASIVGSIGVRMDSFGFTEAIEKIGVERRSLTAGENKAFLDPFLPMKAADVDHA 228 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 D++D+ + F+ +V E R L G W+G +A ++GLID + +V + L Sbjct: 229 HDMLDNIHQQFITVVKEGRGERLKDNDELFSGLFWSGEQALELGLIDGLASSSKVARELI 288 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 I D+ P NY L Sbjct: 289 G------AEDIIDYTPRPNYLDRFAGKLGA 312 >gi|218779085|ref|YP_002430403.1| signal peptide peptidase SppA, 36K type [Desulfatibacillum alkenivorans AK-01] gi|218760469|gb|ACL02935.1| signal peptide peptidase SppA, 36K type [Desulfatibacillum alkenivorans AK-01] Length = 324 Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 137/319 (42%), Gaps = 34/319 (10%) Query: 9 KTRYVMLSLVTLTVVYFSWSSH--------------VEDNSPHVARIAIRGQIEDS---- 50 K+ ++++L+ + S S + + V I + G I D+ Sbjct: 3 KSFILLIALIVFLLPGCSPSFNLFKDASDPLKEHAVSGEGKDKVLMITVAGVISDTPSNE 62 Query: 51 ---------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPV 99 QE++ ++ DD+ A+++ + SPGG+A A + ++ I++ K + K V Sbjct: 63 LFSSKPSVVQEVVSQLRMAEEDDAVKAVVIKVDSPGGTATASDILYHEIKEFKEKTGKKV 122 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 + +AAS GY +S ++ IVA TS+ GS+GV+ P K +DK+GV ++ KS Sbjct: 123 MCVFMNVAASGGYYMSLPADRIVAHPTSITGSVGVIMVQPAFKDLMDKVGVGMRVSKSGR 182 Query: 160 MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAK 219 K SPF + + V+++ V++ FV V + RN+ + + RI+ ++A Sbjct: 183 NKDMGSPFRDPTDEEVRLLNGVINDLAEQFVGHVKDHRNLTPEALEEVRTARIFVASKAL 242 Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI--- 276 ++GLID V + + K+ + K S ++ + Sbjct: 243 ELGLIDEVAYLPQAIDEAKEMAEIPEDSKVVVYRRSKIANDTVYNIAGSQSSVKGALVNV 302 Query: 277 --PLMKQTKVQGLWAVWNP 293 P G + +W P Sbjct: 303 NFPTGYSDLPMGFYYLWAP 321 >gi|332296593|ref|YP_004438516.1| signal peptide peptidase SppA, 36K type [Thermodesulfobium narugense DSM 14796] gi|332179696|gb|AEE15385.1| signal peptide peptidase SppA, 36K type [Thermodesulfobium narugense DSM 14796] Length = 289 Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 78/276 (28%), Positives = 136/276 (49%), Gaps = 7/276 (2%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERIS 61 +LK++ + L ++T+ ++ + V I I G I D S+ + I R Sbjct: 1 MLKRLSLALIFLLILTIVFSLGYMAAKFKPAGAKVGYIEINGTINDQTSESVSSAIRRAK 60 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASN 119 +D + +++ ++SPGGS A + IF + K KP+I + ++AAS GY +S A + Sbjct: 61 QDPNIRGILLRVNSPGGSVGASQEIFETLMNYKESTGKPIIVSMGDVAASGGYYVSLAGD 120 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 I A ++L GSIGV+ + + +G+ +++K+ K S F + PK + + Sbjct: 121 KIFALPSTLTGSIGVIANILDIHELMKNIGIKEETLKTGEYKDTGSMFRSLTPKDKEYLM 180 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 ++ SY F+ VS RNIP DK ++DGR+++GA+AK +GLID +G + + Sbjct: 181 GLIGDSYGQFLYDVSTRRNIPLDKLKSIADGRVFSGAKAKSLGLIDELGTLNDTIDYMKN 240 Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 L + KI +L N S + +E Sbjct: 241 LLGVK---KITLEKLNSKNILEELMNTSSKTDVEQK 273 >gi|218297242|ref|ZP_03497898.1| signal peptide peptidase SppA, 36K type [Thermus aquaticus Y51MC23] gi|218242435|gb|EED08975.1| signal peptide peptidase SppA, 36K type [Thermus aquaticus Y51MC23] Length = 311 Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 68/256 (26%), Positives = 125/256 (48%), Gaps = 5/256 (1%) Query: 35 SPHVARIAIRGQIEDS---QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 V + ++G I ++ + ++ + D A+++ + SPGG EAI RA++ Sbjct: 45 GEKVLLLELKGTIPTDKALEDFLSQVRQAKEDPGIKAVVLEVVSPGGGVTETEAIHRALK 104 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 ++ KP++ + +AAS GY + A+ I A T++ GSIG + ++ LDKLGV Sbjct: 105 ELAREKPLVASLGTVAASGGYYAATAAREIFTAPTTITGSIGAISIQSQIQGLLDKLGVE 164 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 ++ +K K S + P+ ++Q + +Y FV+ V+E R +P ++ L+DGR Sbjct: 165 VEVLKEGKFKDMASGLRPLTPEEKAVIQGYLREAYELFVKRVAEGRRMPPEEVYRLADGR 224 Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK--NYWFCDLKNLSIS 269 I++GA+A +GL D G E+ Q L R ++ P D S + Sbjct: 225 IYSGAQALALGLADREGYLEDAAQRAAELAGLTGFRLVRYKKPKGLLAELLGDEPPFSFA 284 Query: 270 SLLEDTIPLMKQTKVQ 285 S + + + Q++ + Sbjct: 285 SDTQALLQALAQSRFR 300 >gi|15598169|ref|NP_251663.1| peptidase [Pseudomonas aeruginosa PAO1] gi|107102522|ref|ZP_01366440.1| hypothetical protein PaerPA_01003586 [Pseudomonas aeruginosa PACS2] gi|116050975|ref|YP_790200.1| putative peptidase [Pseudomonas aeruginosa UCBPP-PA14] gi|254235947|ref|ZP_04929270.1| hypothetical protein PACG_01902 [Pseudomonas aeruginosa C3719] gi|254241681|ref|ZP_04935003.1| hypothetical protein PA2G_02387 [Pseudomonas aeruginosa 2192] gi|296388534|ref|ZP_06878009.1| putative peptidase [Pseudomonas aeruginosa PAb1] gi|313108158|ref|ZP_07794293.1| putative peptidase [Pseudomonas aeruginosa 39016] gi|9949072|gb|AAG06361.1|AE004723_5 probable peptidase [Pseudomonas aeruginosa PAO1] gi|115586196|gb|ABJ12211.1| putative peptidase [Pseudomonas aeruginosa UCBPP-PA14] gi|126167878|gb|EAZ53389.1| hypothetical protein PACG_01902 [Pseudomonas aeruginosa C3719] gi|126195059|gb|EAZ59122.1| hypothetical protein PA2G_02387 [Pseudomonas aeruginosa 2192] gi|310880795|gb|EFQ39389.1| putative peptidase [Pseudomonas aeruginosa 39016] Length = 326 Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 69/298 (23%), Positives = 131/298 (43%), Gaps = 24/298 (8%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSS------HVEDNSPHVARIAIRGQIEDSQ-----ELI 54 ++ + L+ + L VV ++S + H A I ++G I D + ++ Sbjct: 36 RRWGIFFKSLTFIYLFVVLLAFSPFGSLEKSASRSGSHTALIEVKGMIADDEPASADNIV 95 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV---HEMAASAG 111 + +D+ +++ ++SPGGS I+ I++++ P + ++ AS Sbjct: 96 TALRAAFKDEGTKGIVLRINSPGGSPVQSGYIYDEIRRLRGEHPNVKVYAVISDLGASGA 155 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I A + SLVGSIGV ++KLGV + S K+ PF Sbjct: 156 YYIASAADQIYADKASLVGSIGVTAASFGFVGTMEKLGVERRVYTSGEHKSFLDPFQPQK 215 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--LVLSDGRIWTGAEAKKVGLIDVVGG 229 P+ Q Q V+D+++ F+ V + R L G +W+G +A ++GLID +G Sbjct: 216 PEETQFWQQVLDTTHKQFIDSVKKGRGDRLKVEGHPELFSGLVWSGEQALQLGLIDGLGN 275 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 V + + +KI+D+ ++ + K S + + + L + L Sbjct: 276 ASYVAREVVK------EKKIEDYTVQESPFDRFAKKFGAS--VAERLALWMGWQGPVL 325 >gi|90021269|ref|YP_527096.1| putative peptidase [Saccharophagus degradans 2-40] gi|89950869|gb|ABD80884.1| peptidase S49 [Saccharophagus degradans 2-40] Length = 329 Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 69/274 (25%), Positives = 119/274 (43%), Gaps = 15/274 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIE 58 V K + Y + ++ L V S V H A + +RG I +E + + Sbjct: 44 VFKTLTFAY-LFVVLMLFVAGAQQSGVVNVTEDHTAVVMVRGAIAGDKEASAPRINAALR 102 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLIS 115 ++ A A++++++SPGGS ++ I ++ K V + ++ AS Y IS Sbjct: 103 AAFENEHAKAIVLAVNSPGGSPVQSAYVYDEIMRLKKEYPDKKVYAVIEDIGASGAYYIS 162 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I A +SLVGSIGV+ ++KLGV + S KA PFS N + Sbjct: 163 AAADEIYANRSSLVGSIGVIASGFGFTGTMEKLGVERRVYTSGENKAFLDPFSPANEQHE 222 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 + + V+ + F+ V R + G IW G A ++GLID +G +V + Sbjct: 223 EFWEGVLAEVHVQFMDAVKAGRGDRLKDNDTVFSGLIWNGERALEMGLIDGLGSARDVAR 282 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 + K+ D+ K+ + + +S Sbjct: 283 DVIKH------EKLVDYTRRKSPLQELMNSFGVS 310 >gi|256822612|ref|YP_003146575.1| signal peptide peptidase SppA, 67K type [Kangiella koreensis DSM 16069] gi|256796151|gb|ACV26807.1| signal peptide peptidase SppA, 67K type [Kangiella koreensis DSM 16069] Length = 619 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 73/270 (27%), Positives = 127/270 (47%), Gaps = 14/270 (5%) Query: 30 HVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSA 80 + N VA I +G+I D I++ DD A+++ + SPGGSA Sbjct: 316 ELPSNKDTVAVIVAKGEIVDGSRKEGVIGGDSTARLIQKARLDDKVKAIVLRVDSPGGSA 375 Query: 81 YAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 +A E I +++ +N K V+ + +AAS GY IS S+ I A T++ GSIG+ P Sbjct: 376 FASEVIRSELERAQNEGKIVVASMGGVAASGGYWISATSDEIWAHPTTITGSIGIFGMIP 435 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + L+KLGV V ++ P ++P+ Q++Q ++ Y F+ LV E RN+ Sbjct: 436 TFEEPLNKLGVYRDGVGTTKWTLAFDPMDGISPEIAQLIQRSIERGYERFLSLVGEGRNM 495 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN-- 257 ++ ++ GR+W+G +A ++GL+D +G E+ +S L +K + Sbjct: 496 TIEEVDQIAQGRVWSGEDAHRLGLVDQLGDLEDAIESAAKLANIGDDYAVKFIKRELSAE 555 Query: 258 --YWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 + L L+ I +K ++ Sbjct: 556 EIFIRNLLDQAKAEGKLDAVIAQLKDSETD 585 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 38/280 (13%), Positives = 97/280 (34%), Gaps = 37/280 (13%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51 + + + + S + + +A +G I + + Sbjct: 18 RLMIGLIALTIFILFVRGCASGPDLPKVDDGAALILAPKGIIVEQETYLDPVARAMQEAQ 77 Query: 52 ----------ELIERIERISRDDSATALIVSLSSPGG---SAYAGEAIFRAIQKVKNRKP 98 +L++ IE DD + ++++++S G + + RAI K Sbjct: 78 GTAPNETSIYDLLDAIEYAKNDDRISVMVINVNSLQGVYAGISKYQDLRRAIDDFKESGK 137 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 + V + Y ++ +++ + ++ G+ Y K LD LGV + + Sbjct: 138 KVIAVGDYYMQGQYYLASSADEVYMNPFGMLMFEGLGRNGTYFKSALDNLGVKVHVFRVG 197 Query: 159 PMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW--- 213 K+ PF +++ A + + + + + ++ SRN+ ++ + + Sbjct: 198 TFKSAVEPFIRDDMSEAAKEANLEWLGDLWTHMKQDLAASRNMSVEEFDSFIENYLVKFE 257 Query: 214 -----TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 +G A + G +D + + E Q + + + Sbjct: 258 AANGDSGELAVQEGFVDKLMTRGEFRQYMIDMVGLNEKKD 297 >gi|74317578|ref|YP_315318.1| protease [Thiobacillus denitrificans ATCC 25259] gi|74057073|gb|AAZ97513.1| protease [Thiobacillus denitrificans ATCC 25259] Length = 313 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 62/281 (22%), Positives = 119/281 (42%), Gaps = 15/281 (5%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS----QELIERIERISRDDSAT 67 ++ L +V V + V H A + ++G I +I ++ D Sbjct: 39 FLYLFIVLFLVAGWFGDDGVGIPKAHTALVDLQGVIASDQASADAVITSLQSAFEDKKTK 98 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCASNIIVAA 124 +++ ++SPGGS I+ I+++ + P+ V ++ AS GY ++ ++ I Sbjct: 99 GVVLRINSPGGSPVQAGQIYDEIRRLRKLHPQVPLYAVVDDICASGGYYVAVGADKIFVD 158 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 + S+VGSIGVL + KLGV + + + K PFS VNP+ + +++ Sbjct: 159 KASIVGSIGVLMDGFGFTETMQKLGVERRLLTAGENKGFLDPFSPVNPEQQAYAKQMLEE 218 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 + F+ V E R +T + G +W+G + ++GL D +G + V + + Sbjct: 219 IHGQFIATVREGRGKRLKETPDMFTGLVWSGERSIQLGLADEIGSLDTVARDVIK----- 273 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 I D+ ++ L + + L + VQ Sbjct: 274 -AEDIVDFTKEESLAERLAGRLGA--TMAKAMGLTDRAGVQ 311 >gi|289756812|ref|ZP_06516190.1| protease IV SppA [Mycobacterium tuberculosis T85] gi|289712376|gb|EFD76388.1| protease IV SppA [Mycobacterium tuberculosis T85] Length = 466 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%) Query: 27 WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70 S + P +A + + G I + + ++ DDS +A++ Sbjct: 164 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 223 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + + SPGGS A E I+R + + ++R KPV+ + +AAS GY +S ++ IVA ++ Sbjct: 224 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 283 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ V+ D+LGV +V+++ S + P + D Y F Sbjct: 284 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 343 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V V+E R + D V++ GR+WTGA+A GL+D +GG + L ++ Sbjct: 344 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 403 Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288 + + P + + ++ + ++ L D + + + G+ Sbjct: 404 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 446 Score = 60.0 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQD 180 VG +G +++ L K G+ + V K+ + F+E + + Sbjct: 3 CNPRGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTEDGFTDAHREAVTR 62 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 ++DS + V++SRNI D L+D +A GLID +G +++ + + L Sbjct: 63 MLDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIGFRDQAYARMAEL 122 Query: 241 GVDQS 245 + Sbjct: 123 VGVEK 127 >gi|289760851|ref|ZP_06520229.1| protease IV sppA [Mycobacterium tuberculosis GM 1503] gi|289708357|gb|EFD72373.1| protease IV sppA [Mycobacterium tuberculosis GM 1503] Length = 364 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%) Query: 27 WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70 S + P +A + + G I + + ++ DDS +A++ Sbjct: 62 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 121 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + + SPGGS A E I+R + + ++R KPV+ + +AAS GY +S ++ IVA ++ Sbjct: 122 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 181 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ V+ D+LGV +V+++ S + P + D Y F Sbjct: 182 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 241 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V V+E R + D V++ GR+WTGA+A GL+D +GG + L ++ Sbjct: 242 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 301 Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288 + + P + + ++ + ++ L D + + + G+ Sbjct: 302 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 344 >gi|289446284|ref|ZP_06436028.1| protease IV sppA [Mycobacterium tuberculosis CPHL_A] gi|289419242|gb|EFD16443.1| protease IV sppA [Mycobacterium tuberculosis CPHL_A] Length = 613 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%) Query: 27 WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70 S + P +A + + G I + + ++ DDS +A++ Sbjct: 321 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 380 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + + SPGGS A E I+R + + ++R KPV+ + +AAS GY +S ++ IVA ++ Sbjct: 381 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 440 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ V+ D+LGV +V+++ S + P + D Y F Sbjct: 441 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 500 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V V+E R + D V++ GR+WTGA+A GL+D +GG + L ++ Sbjct: 501 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 560 Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288 + + P + + ++ + ++ L D + + + G+ Sbjct: 561 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 603 Score = 96.2 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 2/197 (1%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 ++ + I R + D LI + P A A + + AI KP + + Sbjct: 88 RDAVAAIHRAAEDPRVAGLIARVQLPPSPAGAVQELREAIAAFSAVKPSLAWAETYPGTL 147 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169 Y ++ A + + VG +G +++ L K G+ + V K+ + F+E Sbjct: 148 SYYLASAFGEVWMQPSGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTED 207 Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 + + ++DS + V++SRNI D L+D +A GLID +G Sbjct: 208 GFTDAHREAVTRMLDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIG 267 Query: 229 GQEEVWQSLYALGVDQS 245 +++ + + L + Sbjct: 268 FRDQAYARMAELVGVEK 284 >gi|260185606|ref|ZP_05763080.1| protease IV sppA [Mycobacterium tuberculosis CPHL_A] Length = 590 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%) Query: 27 WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70 S + P +A + + G I + + ++ DDS +A++ Sbjct: 298 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 357 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + + SPGGS A E I+R + + ++R KPV+ + +AAS GY +S ++ IVA ++ Sbjct: 358 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 417 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ V+ D+LGV +V+++ S + P + D Y F Sbjct: 418 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 477 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V V+E R + D V++ GR+WTGA+A GL+D +GG + L ++ Sbjct: 478 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 537 Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288 + + P + + ++ + ++ L D + + + G+ Sbjct: 538 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 580 Score = 96.2 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 2/197 (1%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 ++ + I R + D LI + P A A + + AI KP + + Sbjct: 65 RDAVAAIHRAAEDPRVAGLIARVQLPPSPAGAVQELREAIAAFSAVKPSLAWAETYPGTL 124 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169 Y ++ A + + VG +G +++ L K G+ + V K+ + F+E Sbjct: 125 SYYLASAFGEVWMQPSGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTED 184 Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 + + ++DS + V++SRNI D L+D +A GLID +G Sbjct: 185 GFTDAHREAVTRMLDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIG 244 Query: 229 GQEEVWQSLYALGVDQS 245 +++ + + L + Sbjct: 245 FRDQAYARMAELVGVEK 261 >gi|289749231|ref|ZP_06508609.1| protease IV sppA [Mycobacterium tuberculosis T92] gi|289689818|gb|EFD57247.1| protease IV sppA [Mycobacterium tuberculosis T92] Length = 567 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%) Query: 27 WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70 S + P +A + + G I + + ++ DDS +A++ Sbjct: 265 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 324 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + + SPGGS A E I+R + + ++R KPV+ + +AAS GY +S ++ IVA ++ Sbjct: 325 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 384 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ V+ D+LGV +V+++ S + P + D Y F Sbjct: 385 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 444 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V V+E R + D V++ GR+WTGA+A GL+D +GG + L ++ Sbjct: 445 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 504 Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288 + + P + + ++ + ++ L D + + + G+ Sbjct: 505 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 547 Score = 96.2 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 2/197 (1%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 ++ + I R + D LI + P A A + + AI KP + + Sbjct: 32 RDAVAAIHRAAEDPRVAGLIARVQLPPSPAGAVQELREAIAAFSAVKPSLAWAETYPGTL 91 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169 Y ++ A + + VG +G +++ L K G+ + V K+ + F+E Sbjct: 92 SYYLASAFGEVWMQPSGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTED 151 Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 + + ++DS + V++SRNI D L+D +A GLID +G Sbjct: 152 GFTDAHREAVTRMLDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIG 211 Query: 229 GQEEVWQSLYALGVDQS 245 +++ + + L + Sbjct: 212 FRDQAYARMAELVGVEK 228 >gi|219556574|ref|ZP_03535650.1| protease IV [Mycobacterium tuberculosis T17] Length = 463 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%) Query: 27 WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70 S + P +A + + G I + + ++ DDS +A++ Sbjct: 161 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 220 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + + SPGGS A E I+R + + ++R KPV+ + +AAS GY +S ++ IVA ++ Sbjct: 221 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 280 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ V+ D+LGV +V+++ S + P + D Y F Sbjct: 281 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 340 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V V+E R + D V++ GR+WTGA+A GL+D +GG + L ++ Sbjct: 341 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 400 Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288 + + P + + ++ + ++ L D + + + G+ Sbjct: 401 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 443 Score = 58.1 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 2/124 (1%) Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDV 181 A + VG +G +++ L K G+ + V K+ + F+E + + + Sbjct: 1 APSGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTEDGFTDAHREAVTRM 60 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 +DS + V++SRNI D L+D +A GLID +G +++ + + L Sbjct: 61 LDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIGFRDQAYARMAELV 120 Query: 242 VDQS 245 + Sbjct: 121 GVEK 124 >gi|215444849|ref|ZP_03431601.1| protease IV [Mycobacterium tuberculosis T85] gi|289568669|ref|ZP_06448896.1| protease IV sppA [Mycobacterium tuberculosis T17] gi|289542423|gb|EFD46071.1| protease IV sppA [Mycobacterium tuberculosis T17] Length = 458 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%) Query: 27 WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70 S + P +A + + G I + + ++ DDS +A++ Sbjct: 156 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 215 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + + SPGGS A E I+R + + ++R KPV+ + +AAS GY +S ++ IVA ++ Sbjct: 216 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 275 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ V+ D+LGV +V+++ S + P + D Y F Sbjct: 276 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 335 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V V+E R + D V++ GR+WTGA+A GL+D +GG + L ++ Sbjct: 336 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 395 Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288 + + P + + ++ + ++ L D + + + G+ Sbjct: 396 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 438 Score = 58.1 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSY 186 +G +G +++ L K G+ + V K+ + F+E + + ++DS Sbjct: 1 MGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTEDGFTDAHREAVTRMLDSLQ 60 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 + V++SRNI D L+D +A GLID +G +++ + + L + Sbjct: 61 DQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIGFRDQAYARMAELVGVEK 119 >gi|215429565|ref|ZP_03427484.1| protease IV sppA [Mycobacterium tuberculosis EAS054] gi|289752771|ref|ZP_06512149.1| protease IV SppA [Mycobacterium tuberculosis EAS054] gi|289693358|gb|EFD60787.1| protease IV SppA [Mycobacterium tuberculosis EAS054] Length = 622 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%) Query: 27 WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70 S + P +A + + G I + + ++ DDS +A++ Sbjct: 320 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 379 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + + SPGGS A E I+R + + ++R KPV+ + +AAS GY +S ++ IVA ++ Sbjct: 380 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 439 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ V+ D+LGV +V+++ S + P + D Y F Sbjct: 440 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 499 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V V+E R + D V++ GR+WTGA+A GL+D +GG + L ++ Sbjct: 500 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 559 Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288 + + P + + ++ + ++ L D + + + G+ Sbjct: 560 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 602 Score = 96.2 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 2/197 (1%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 ++ + I R + D LI + P A A + + AI KP + + Sbjct: 87 RDAVAAIHRAAEDPRVAGLIARVQLPPSPAGAVQELREAIAAFSAVKPSLAWAETYPGTL 146 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169 Y ++ A + + VG +G +++ L K G+ + V K+ + F+E Sbjct: 147 SYYLASAFGEVWMQPSGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTED 206 Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 + + ++DS + V++SRNI D L+D +A GLID +G Sbjct: 207 GFTDAHREAVTRMLDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIG 266 Query: 229 GQEEVWQSLYALGVDQS 245 +++ + + L + Sbjct: 267 FRDQAYARMAELVGVEK 283 >gi|215425966|ref|ZP_03423885.1| protease IV sppA [Mycobacterium tuberculosis T92] Length = 580 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%) Query: 27 WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70 S + P +A + + G I + + ++ DDS +A++ Sbjct: 278 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 337 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + + SPGGS A E I+R + + ++R KPV+ + +AAS GY +S ++ IVA ++ Sbjct: 338 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 397 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ V+ D+LGV +V+++ S + P + D Y F Sbjct: 398 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 457 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V V+E R + D V++ GR+WTGA+A GL+D +GG + L ++ Sbjct: 458 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 517 Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288 + + P + + ++ + ++ L D + + + G+ Sbjct: 518 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 560 Score = 96.2 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 2/197 (1%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 ++ + I R + D LI + P A A + + AI KP + + Sbjct: 45 RDAVAAIHRAAEDPRVAGLIARVQLPPSPAGAVQELREAIAAFSAVKPSLAWAETYPGTL 104 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169 Y ++ A + + VG +G +++ L K G+ + V K+ + F+E Sbjct: 105 SYYLASAFGEVWMQPSGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTED 164 Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 + + ++DS + V++SRNI D L+D +A GLID +G Sbjct: 165 GFTDAHREAVTRMLDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIG 224 Query: 229 GQEEVWQSLYALGVDQS 245 +++ + + L + Sbjct: 225 FRDQAYARMAELVGVEK 241 >gi|15607864|ref|NP_215238.1| protease IV SppA [Mycobacterium tuberculosis H37Rv] gi|31791910|ref|NP_854403.1| protease IV SppA [Mycobacterium bovis AF2122/97] gi|121636646|ref|YP_976869.1| putative protease IV sppA (endopeptidase IV) [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660499|ref|YP_001282022.1| hypothetical protein MRA_0732 [Mycobacterium tuberculosis H37Ra] gi|148821929|ref|YP_001286683.1| protease IV sppA [Mycobacterium tuberculosis F11] gi|224989118|ref|YP_002643805.1| putative protease IV [Mycobacterium bovis BCG str. Tokyo 172] gi|253797667|ref|YP_003030668.1| protease IV sppA [Mycobacterium tuberculosis KZN 1435] gi|254231044|ref|ZP_04924371.1| protease IV sppA [Mycobacterium tuberculosis C] gi|254363670|ref|ZP_04979716.1| protease IV sppA [Mycobacterium tuberculosis str. Haarlem] gi|289442125|ref|ZP_06431869.1| signal peptide peptidase SppA, 67K type [Mycobacterium tuberculosis T46] gi|289552981|ref|ZP_06442191.1| protease IV sppA [Mycobacterium tuberculosis KZN 605] gi|289573332|ref|ZP_06453559.1| protease IV sppA [Mycobacterium tuberculosis K85] gi|289744448|ref|ZP_06503826.1| protease IV sppA [Mycobacterium tuberculosis 02_1987] gi|298524215|ref|ZP_07011624.1| protease IV [Mycobacterium tuberculosis 94_M4241A] gi|308371742|ref|ZP_07426068.2| protease IV sppA [Mycobacterium tuberculosis SUMu004] gi|1806192|emb|CAB06448.1| POSSIBLE PROTEASE IV SPPA (ENDOPEPTIDASE IV) (SIGNAL PEPTIDE PEPTIDASE) [Mycobacterium tuberculosis H37Rv] gi|31617497|emb|CAD93607.1| POSSIBLE PROTEASE IV SPPA (ENDOPEPTIDASE IV) (SIGNAL PEPTIDE PEPTIDASE) [Mycobacterium bovis AF2122/97] gi|121492293|emb|CAL70760.1| Possible protease IV sppA (endopeptidase IV) [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600103|gb|EAY59113.1| protease IV sppA [Mycobacterium tuberculosis C] gi|134149184|gb|EBA41229.1| protease IV sppA [Mycobacterium tuberculosis str. Haarlem] gi|148504651|gb|ABQ72460.1| putative protease IV [Mycobacterium tuberculosis H37Ra] gi|148720456|gb|ABR05081.1| protease IV sppA [Mycobacterium tuberculosis F11] gi|224772231|dbj|BAH25037.1| putative protease IV [Mycobacterium bovis BCG str. Tokyo 172] gi|253319170|gb|ACT23773.1| protease IV sppA [Mycobacterium tuberculosis KZN 1435] gi|289415044|gb|EFD12284.1| signal peptide peptidase SppA, 67K type [Mycobacterium tuberculosis T46] gi|289437613|gb|EFD20106.1| protease IV sppA [Mycobacterium tuberculosis KZN 605] gi|289537763|gb|EFD42341.1| protease IV sppA [Mycobacterium tuberculosis K85] gi|289684976|gb|EFD52464.1| protease IV sppA [Mycobacterium tuberculosis 02_1987] gi|298494009|gb|EFI29303.1| protease IV [Mycobacterium tuberculosis 94_M4241A] gi|308335656|gb|EFP24507.1| protease IV sppA [Mycobacterium tuberculosis SUMu004] gi|326905054|gb|EGE51987.1| protease IV sppA [Mycobacterium tuberculosis W-148] gi|328457448|gb|AEB02871.1| protease IV sppA [Mycobacterium tuberculosis KZN 4207] Length = 623 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%) Query: 27 WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70 S + P +A + + G I + + ++ DDS +A++ Sbjct: 321 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 380 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + + SPGGS A E I+R + + ++R KPV+ + +AAS GY +S ++ IVA ++ Sbjct: 381 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 440 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ V+ D+LGV +V+++ S + P + D Y F Sbjct: 441 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 500 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V V+E R + D V++ GR+WTGA+A GL+D +GG + L ++ Sbjct: 501 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 560 Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288 + + P + + ++ + ++ L D + + + G+ Sbjct: 561 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 603 Score = 96.2 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 2/197 (1%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 ++ + I R + D LI + P A A + + AI KP + + Sbjct: 88 RDAVAAIHRAAEDPRVAGLIARVQLPPSPAGAVQELREAIAAFSAVKPSLAWAETYPGTL 147 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169 Y ++ A + + VG +G +++ L K G+ + V K+ + F+E Sbjct: 148 SYYLASAFGEVWMQPSGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTED 207 Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 + + ++DS + V++SRNI D L+D +A GLID +G Sbjct: 208 GFTDAHREAVTRMLDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIG 267 Query: 229 GQEEVWQSLYALGVDQS 245 +++ + + L + Sbjct: 268 FRDQAYARMAELVGVEK 284 >gi|167968282|ref|ZP_02550559.1| protease IV sppA [Mycobacterium tuberculosis H37Ra] gi|215402507|ref|ZP_03414688.1| protease IV sppA [Mycobacterium tuberculosis 02_1987] gi|215410281|ref|ZP_03419089.1| protease IV sppA [Mycobacterium tuberculosis 94_M4241A] gi|254549685|ref|ZP_05140132.1| protease IV sppA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260199734|ref|ZP_05767225.1| protease IV sppA [Mycobacterium tuberculosis T46] gi|260203895|ref|ZP_05771386.1| protease IV sppA [Mycobacterium tuberculosis K85] gi|294996206|ref|ZP_06801897.1| protease IV sppA [Mycobacterium tuberculosis 210] gi|297633223|ref|ZP_06951003.1| protease IV sppA [Mycobacterium tuberculosis KZN 4207] gi|297730203|ref|ZP_06959321.1| protease IV sppA [Mycobacterium tuberculosis KZN R506] gi|306796479|ref|ZP_07434781.1| protease IV sppA [Mycobacterium tuberculosis SUMu006] gi|313657530|ref|ZP_07814410.1| protease IV sppA [Mycobacterium tuberculosis KZN V2475] gi|308343138|gb|EFP31989.1| protease IV sppA [Mycobacterium tuberculosis SUMu006] gi|323720851|gb|EGB29918.1| protease IV sppA [Mycobacterium tuberculosis CDC1551A] Length = 600 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%) Query: 27 WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70 S + P +A + + G I + + ++ DDS +A++ Sbjct: 298 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 357 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + + SPGGS A E I+R + + ++R KPV+ + +AAS GY +S ++ IVA ++ Sbjct: 358 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 417 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ V+ D+LGV +V+++ S + P + D Y F Sbjct: 418 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 477 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V V+E R + D V++ GR+WTGA+A GL+D +GG + L ++ Sbjct: 478 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 537 Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288 + + P + + ++ + ++ L D + + + G+ Sbjct: 538 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 580 Score = 96.2 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 2/197 (1%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 ++ + I R + D LI + P A A + + AI KP + + Sbjct: 65 RDAVAAIHRAAEDPRVAGLIARVQLPPSPAGAVQELREAIAAFSAVKPSLAWAETYPGTL 124 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169 Y ++ A + + VG +G +++ L K G+ + V K+ + F+E Sbjct: 125 SYYLASAFGEVWMQPSGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTED 184 Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 + + ++DS + V++SRNI D L+D +A GLID +G Sbjct: 185 GFTDAHREAVTRMLDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIG 244 Query: 229 GQEEVWQSLYALGVDQS 245 +++ + + L + Sbjct: 245 FRDQAYARMAELVGVEK 261 >gi|330900160|gb|EGH31579.1| peptidase S49, SppA [Pseudomonas syringae pv. japonica str. M301072PT] Length = 332 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 70/291 (24%), Positives = 123/291 (42%), Gaps = 18/291 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61 K V + V + S + A I ++G I D ++ ++ +++ Sbjct: 49 FFKLLTFAFLFVAVIVPMLDFEGGTSRRSSYTALIDVQGVIADKEAASAENIVTALQKAF 108 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118 D+ +I+ ++SPGGS ++ I++++ KP I + AS Y I+ A+ Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRATKPDIKVYAVITDLGASGAYYIASAA 168 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I A + SLVGSIGV +DKLGV ++ S KA PF Q Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q V+D+++ F+ V + R L G IWTG +A +GL+D +G V + Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKEHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + I ++ ++ + K L S + + I ++ L Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 331 >gi|39933145|ref|NP_945421.1| signal peptide peptidase SppA 36K type [Rhodopseudomonas palustris CGA009] gi|192288501|ref|YP_001989106.1| signal peptide peptidase SppA, 36K type [Rhodopseudomonas palustris TIE-1] gi|39652770|emb|CAE25509.1| putative protease IV [Rhodopseudomonas palustris CGA009] gi|192282250|gb|ACE98630.1| signal peptide peptidase SppA, 36K type [Rhodopseudomonas palustris TIE-1] Length = 326 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 88/285 (30%), Positives = 152/285 (53%), Gaps = 15/285 (5%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 + ++ +ARI I G I + E ++ ++R+ + S +A+IV ++SPGG+ Sbjct: 39 MVSPAGRGALTSTGSIARIKIEGLIRSNDERVQALDRLGK-SSYSAVIVHINSPGGTTAG 97 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E + A+ ++K +KP++ V +AAS GY+ + AS IVA +TSLVGSIGVLFQYP V Sbjct: 98 SEELHDALARLKAKKPMVVVVEGLAASGGYIAALASEHIVAQQTSLVGSIGVLFQYPNVS 157 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L +GV ++ VKSSP+KA P+ F +P+A ++ +V SY WF +V +SR + D Sbjct: 158 ELLKTVGVKVEEVKSSPLKAAPNGFEPTSPEARAAIEALVKDSYAWFRGMVQQSRKMTDD 217 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + V++DGR++TG +A + LID +G + L ++ ++D+ + Sbjct: 218 QLNVVADGRVFTGRQAVGLKLIDELGDERTAIAWLEKAKNVKAGLPVRDYKLAPQFGDLT 277 Query: 263 LKNLSISSLLE--------------DTIPLMKQTKVQGLWAVWNP 293 + S + + +++ + G+ A+W P Sbjct: 278 FLRAAASVAFDAAGLGVIARRVEQTGAMQSVERLGLDGMLALWAP 322 >gi|71737114|ref|YP_273878.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557667|gb|AAZ36878.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. phaseolicola 1448A] gi|320325305|gb|EFW81372.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. glycinea str. B076] gi|320327710|gb|EFW83718.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. glycinea str. race 4] Length = 332 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 18/291 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61 K V + V + S H A I ++G I D ++ ++ +++ Sbjct: 49 FFKLLTFAFLFVAVVVPMLDFEGGTSRRSSHTALIDVQGVIADKESASAENIVTALQKAF 108 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118 D+ +I+ ++SPGGS ++ I++++ KP I + AS Y I+ A+ Sbjct: 109 EDEKTRGVILRINSPGGSPVQSGYVYDEIRRLRAAKPDIKVYAVITDLGASGAYYIASAA 168 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I A + SLVGSIGV +DKLGV ++ S KA PF Q Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q V+D+++ F+ V + R L G IWTG +A +GL+D +G V + Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKDHPELFSGLIWTGEQAVALGLVDGLGSASYVARD 288 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + I ++ ++ + K L S + + I ++ L Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 331 >gi|213969775|ref|ZP_03397910.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. tomato T1] gi|301382851|ref|ZP_07231269.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. tomato Max13] gi|302062843|ref|ZP_07254384.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. tomato K40] gi|302131351|ref|ZP_07257341.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925583|gb|EEB59143.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. tomato T1] Length = 332 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 121/291 (41%), Gaps = 18/291 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61 K V V + + + S H A I ++G I D ++ + + Sbjct: 49 FFKLLTVAFLFVAIVLPMLDFEGGASRRSSHTALIDVQGVIADKESASAENITTALRDAF 108 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118 D+ +I+ ++SPGGS ++ I++++ KP I + AS Y I+ A+ Sbjct: 109 GDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAEKPNIKVYAVITDLGASGAYYIASAA 168 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I A + SLVGSIGV ++KLGV ++ S KA PF Q Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMEKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q V+D+++ F+ V + R + G +WTG +A +GL+D +G V + Sbjct: 229 QSVLDTTHRQFIASVKQGRGDRLKDKDHPEMFSGLVWTGEQAVALGLVDGLGSASYVARE 288 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + I ++ ++ + K L S + + I ++ L Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGAS--IAERIAMLVGFGGPSL 331 >gi|49083774|gb|AAT51140.1| PA2973 [synthetic construct] Length = 327 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 69/298 (23%), Positives = 131/298 (43%), Gaps = 24/298 (8%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSS------HVEDNSPHVARIAIRGQIEDSQ-----ELI 54 ++ + L+ + L VV ++S + H A I ++G I D + ++ Sbjct: 36 RRWGIFFKSLTFIYLFVVLLAFSPFGSLEKSASRSGSHTALIEVKGMIADDEPASADNIV 95 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV---HEMAASAG 111 + +D+ +++ ++SPGGS I+ I++++ P + ++ AS Sbjct: 96 TALRAAFKDEGTKGIVLRINSPGGSPVQSGYIYDEIRRLRGEHPNVKVYAVISDLGASGA 155 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I A + SLVGSIGV ++KLGV + S K+ PF Sbjct: 156 YYIASAADQIYADKASLVGSIGVTAASFGFVGTMEKLGVERRVYTSGEHKSFLDPFQPQK 215 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--LVLSDGRIWTGAEAKKVGLIDVVGG 229 P+ Q Q V+D+++ F+ V + R L G +W+G +A ++GLID +G Sbjct: 216 PEETQFWQQVLDTTHKQFIDSVEKGRGDRLKVEGHPELFSGLVWSGEQALQLGLIDGLGN 275 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 V + + +KI+D+ ++ + K S + + + L + L Sbjct: 276 ASYVAREVVK------EKKIEDYTVQESPFDRFAKKFGAS--VAERLALWMGWQGPVL 325 >gi|321312489|ref|YP_004204776.1| signal peptide peptidase [Bacillus subtilis BSn5] gi|320018763|gb|ADV93749.1| signal peptide peptidase [Bacillus subtilis BSn5] Length = 335 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 145/319 (45%), Gaps = 42/319 (13%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP------------------------HVARI 41 K+ + L + ++++ S E +A + Sbjct: 4 KRWIALVIALGIFGVSIIVSISMSFFESVKGAQTDLTSLTDESQEKTLENGSLSSKIAVL 63 Query: 42 AIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + G I+D+ + ++ +ER D + +++ ++SPGG Y I Sbjct: 64 EVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIH 123 Query: 88 RAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + ++++K +KP+ + MAAS GY IS A++ I A +L GS+GV+ + Sbjct: 124 KKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLA 183 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 DKLG+S +++KS K SP E+ + +MQ +VD+SY FV ++S+ R + + Sbjct: 184 DKLGISFETIKSGAHKDIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMSKAEVK 243 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 ++DGR++ G +AKK+ L+D +G ++ ++ D + + +++ L + Sbjct: 244 KIADGRVYDGRQAKKLNLVDELGFYDDTITAMKKDHKDLKNASVISYE--ESFGLGSLFS 301 Query: 266 LSISSLLEDTIPLMKQTKV 284 + + + + I + ++ Sbjct: 302 MGANKMFKSEIDFLNMREI 320 >gi|301063986|ref|ZP_07204451.1| signal peptide peptidase SppA, 36K type [delta proteobacterium NaphS2] gi|300441897|gb|EFK06197.1| signal peptide peptidase SppA, 36K type [delta proteobacterium NaphS2] Length = 294 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 67/272 (24%), Positives = 133/272 (48%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVS 72 V+L + L +F S + +AI G I +++ ++ + +RD++ A+I+ Sbjct: 12 VLLGGILLLTFHFFGPSTTALFKEKIGVVAINGTISSGKKISSQLAKFARDENIRAIILR 71 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 ++SPGG A + I+R +QK +KPVI + +AAS GY ++ + IV+ ++ GSI Sbjct: 72 INSPGGGVGATQEIYREVQKTIRQKPVIVSMGSVAASGGYYVAAPATKIVSNPGTITGSI 131 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GV Q+ ++ L K+GV + VKS K SP ++ + ++++ +++ FV Sbjct: 132 GVFIQFVRLEKLLSKIGVDFEIVKSGEFKDMGSPDRKLTRRDREIIEALIEDLQGQFVSA 191 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 V+ R++ + +DGRI++GA AK++GL+D +G ++ + + ++ Sbjct: 192 VASGRHLSVQEVQKFADGRIFSGARAKQLGLVDFMGNFQDAVEITKKVVGITGEVELVHP 251 Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + S ++ K + Sbjct: 252 KKTSSELLDLFLESSARHFMKAFGDGAKGNVL 283 >gi|42522622|ref|NP_968002.1| signal peptide peptidase [Bdellovibrio bacteriovorus HD100] gi|39575154|emb|CAE78995.1| signal peptide peptidase [Bdellovibrio bacteriovorus HD100] Length = 322 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 64/266 (24%), Positives = 119/266 (44%), Gaps = 5/266 (1%) Query: 2 EFVLKKIKTRYVMLSLVTLTVV---YFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIE 58 F K I V + L L + +F + + + G I + ++ I+ ++ Sbjct: 4 SFFKKLIIIFLVFVGLGALLKMSGDFFGSEDKRVTAKNTILHLEMNGVILNGKKFIKNLK 63 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISC 116 + DD A+++S++SPGGS + +F I++V++ +KPV+ + AS Y + Sbjct: 64 KYRDDDKVKAILISINSPGGSVGPSQELFAEIKRVRDEIKKPVVCVSTGVMASGAYYAAV 123 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 A + IV A +LVGSIGV+ ++ ++ D +S S+ S K + + + Sbjct: 124 ACDKIVVAPGALVGSIGVIMEFANLEKLYDWAKISRYSITSGKFKDSGAEYRPMREDERS 183 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 + Q ++D Y F V+ R + + +DGR++TGA A KVG D G ++ + Sbjct: 184 LFQSMIDEVYAQFKGTVATERKLKEEVVAEYADGRVFTGATAVKVGFADQEGYFDDAVKL 243 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCD 262 + + + K F Sbjct: 244 AAEIAKLGDNYDVFEVPKKKVSIFDL 269 >gi|218890829|ref|YP_002439693.1| putative peptidase [Pseudomonas aeruginosa LESB58] gi|218771052|emb|CAW26817.1| probable peptidase [Pseudomonas aeruginosa LESB58] Length = 326 Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 67/280 (23%), Positives = 125/280 (44%), Gaps = 22/280 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSS------HVEDNSPHVARIAIRGQIEDSQ-----ELI 54 ++ + L+ + L VV ++S + H A I ++G I D + ++ Sbjct: 36 RRWGIFFKSLTFIYLFVVLLAFSPFGSLEKSASRSGSHTALIEVKGMIADDEPASADNIV 95 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV---HEMAASAG 111 + +D+ +++ ++SPGGS I+ I++++ P + ++ AS Sbjct: 96 TALRAAFKDEGTKGIVLRINSPGGSPVQSGYIYDEIRRLRGEHPNVKVYAVISDLGASGA 155 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I A + SLVGSIGV ++KLGV + S K+ PF Sbjct: 156 YYIASAADQIYADKASLVGSIGVTAASFGFVGTMEKLGVERRVYTSGEHKSFLDPFQPQK 215 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--LVLSDGRIWTGAEAKKVGLIDVVGG 229 P+ Q Q V+D+++ F+ V + R L G +W+G +A ++GLID +G Sbjct: 216 PEETQFWQQVLDTTHKQFIDSVKKGRGDRLKVEGHPELFSGLVWSGEQALQLGLIDGLGN 275 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 V + + +KI+D+ ++ + K S Sbjct: 276 ASYVAREVVK------EKKIEDYTVQESPFDRFAKKFGAS 309 >gi|70729174|ref|YP_258910.1| signal peptide peptidase SppA, 36K type [Pseudomonas fluorescens Pf-5] gi|68343473|gb|AAY91079.1| signal peptide peptidase SppA, 36K type [Pseudomonas fluorescens Pf-5] Length = 329 Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 62/283 (21%), Positives = 121/283 (42%), Gaps = 16/283 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIE 58 + K+ T + + + L + + + A I + G I D + ++ + Sbjct: 43 IFFKLLTFVYLFAALALFTPLMTMEKNATRGGSYTAVIDVTGVIADKESASADNIVGSLR 102 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAGYLIS 115 D +++ ++SPGGS ++ I++ + V + ++ AS Y I+ Sbjct: 103 TAFDDPKVKGIVLRINSPGGSPVQSGYVYDEIRRLRALHKDTKVYAVISDLGASGAYYIA 162 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I A + SLVGSIGV ++KLGV ++ S K+ PF P+ Sbjct: 163 SAADEIYADKASLVGSIGVTAAGYGFVGTMEKLGVERRTYTSGEHKSFLDPFQPQKPEET 222 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 Q Q V+D+++ F+ V + R L G +W+G +A ++GLID +G V Sbjct: 223 QFWQGVLDTTHRQFIASVKQGRGDRLKDKEHPELFSGLVWSGEQALQLGLIDGLGNTSSV 282 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 + + +++ D+ ++ + K L S + + Sbjct: 283 ARDVIG------EKEVVDFTVQESPFDRFSKKLGASVAEQIAM 319 >gi|330966254|gb|EGH66514.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. actinidiae str. M302091] Length = 332 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 69/291 (23%), Positives = 121/291 (41%), Gaps = 18/291 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61 K V V + + + S H A I ++G I D ++ + + Sbjct: 49 FFKLLTVAFLFVAIVLPMLDFEGGASRRSSHTALIDVQGVIADKESASAENITTALRDAF 108 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118 D+ +I+ ++SPGGS ++ I++++ KP I + AS Y I+ A+ Sbjct: 109 GDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAEKPNIKVYAVITDLGASGAYYIASAA 168 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I A + SLVGSIGV ++KLGV ++ S KA PF Q Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMEKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q V+D+++ F+ V + R + G IWTG +A +GL+D +G V + Sbjct: 229 QSVLDTTHRQFIASVKQGRGDRLKDMDHPEMFSGLIWTGEQAVALGLVDGLGSASYVARE 288 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + I ++ ++ + K L S + + I ++ L Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFGGPSL 331 >gi|163783733|ref|ZP_02178719.1| proteinase IV [Hydrogenivirga sp. 128-5-R1-1] gi|159880979|gb|EDP74497.1| proteinase IV [Hydrogenivirga sp. 128-5-R1-1] Length = 264 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 75/251 (29%), Positives = 132/251 (52%), Gaps = 5/251 (1%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 FS VA I I+G I + + +IER+ +D S AL++ + SPGGS A Sbjct: 1 MFSALISRVPVGERVAIINIKGVIVNPIPTVRKIERLRKDKSVKALVIRVDSPGGSVGAS 60 Query: 84 EAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + I+RAI++ K KPV+ + +AAS GY +S ++ I+A ++ GSIGV+ Q+ + Sbjct: 61 QEIYRAIERFKAEGKPVVVSMGNVAASGGYYVSAPADYILANPGTITGSIGVIIQHVAYR 120 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY- 201 ++K+GV ++K+ K +PF E+ P+ + +Q+ + +Y F++ + + R Sbjct: 121 ELMEKIGVKATAIKTGKFKDTLNPFRELTPEEKEYLQETIGEAYEQFLKAILKYRGNKIG 180 Query: 202 -DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 +K ++DGR+ TG AK++GL+D +GG E+ Q + R+ + P + Sbjct: 181 EEKLRSVADGRVLTGERAKELGLVDELGGIEDAVQKAKEIAGVPKAREF--FVPEEKSLL 238 Query: 261 CDLKNLSISSL 271 + I L Sbjct: 239 QKVLGGEIEEL 249 >gi|15840132|ref|NP_335169.1| protease IV [Mycobacterium tuberculosis CDC1551] gi|308370480|ref|ZP_07421698.2| protease IV sppA [Mycobacterium tuberculosis SUMu003] gi|308373552|ref|ZP_07432816.2| protease IV sppA [Mycobacterium tuberculosis SUMu005] gi|308375233|ref|ZP_07443216.2| protease IV sppA [Mycobacterium tuberculosis SUMu007] gi|308376479|ref|ZP_07439007.2| protease IV sppA [Mycobacterium tuberculosis SUMu008] gi|308377499|ref|ZP_07479407.2| protease IV sppA [Mycobacterium tuberculosis SUMu009] gi|308378702|ref|ZP_07483598.2| protease IV sppA [Mycobacterium tuberculosis SUMu010] gi|308379848|ref|ZP_07487837.2| protease IV sppA [Mycobacterium tuberculosis SUMu011] gi|13880283|gb|AAK44983.1| protease IV [Mycobacterium tuberculosis CDC1551] gi|308331869|gb|EFP20720.1| protease IV sppA [Mycobacterium tuberculosis SUMu003] gi|308337113|gb|EFP25964.1| protease IV sppA [Mycobacterium tuberculosis SUMu005] gi|308347025|gb|EFP35876.1| protease IV sppA [Mycobacterium tuberculosis SUMu007] gi|308350909|gb|EFP39760.1| protease IV sppA [Mycobacterium tuberculosis SUMu008] gi|308355599|gb|EFP44450.1| protease IV sppA [Mycobacterium tuberculosis SUMu009] gi|308359558|gb|EFP48409.1| protease IV sppA [Mycobacterium tuberculosis SUMu010] gi|308363462|gb|EFP52313.1| protease IV sppA [Mycobacterium tuberculosis SUMu011] Length = 539 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%) Query: 27 WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70 S + P +A + + G I + + ++ DDS +A++ Sbjct: 237 PSIPGRRSKPTIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIV 296 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + + SPGGS A E I+R + + ++R KPV+ + +AAS GY +S ++ IVA ++ Sbjct: 297 LRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTIT 356 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ V+ D+LGV +V+++ S + P + D Y F Sbjct: 357 GSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDF 416 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V V+E R + D V++ GR+WTGA+A GL+D +GG + L ++ Sbjct: 417 VERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAGLDEDTEV 476 Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288 + + P + + ++ + ++ L D + + + G+ Sbjct: 477 RIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIV 519 Score = 95.8 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 2/197 (1%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 ++ + I R + D LI + P A A + + AI KP + + Sbjct: 4 RDAVAAIHRAAEDPRVAGLIARVQLPPSPAGAVQELREAIAAFSAVKPSLAWAETYPGTL 63 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169 Y ++ A + + VG +G +++ L K G+ + V K+ + F+E Sbjct: 64 SYYLASAFGEVWMQPSGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTED 123 Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 + + ++DS + V++SRNI D L+D +A GLID +G Sbjct: 124 GFTDAHREAVTRMLDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIG 183 Query: 229 GQEEVWQSLYALGVDQS 245 +++ + + L + Sbjct: 184 FRDQAYARMAELVGVEK 200 >gi|195953570|ref|YP_002121860.1| signal peptide peptidase SppA, 36K type [Hydrogenobaculum sp. Y04AAS1] gi|195933182|gb|ACG57882.1| signal peptide peptidase SppA, 36K type [Hydrogenobaculum sp. Y04AAS1] Length = 282 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 72/263 (27%), Positives = 136/263 (51%), Gaps = 5/263 (1%) Query: 14 MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSL 73 +L + + V+ + + SP++A I +RG I + + ++IE+ +D + AL++ + Sbjct: 5 VLIFLGVIFVFSLVFAFLNRRSPNIAIIRVRGVILNPLPIEKQIEKAQKDPNIKALVLRV 64 Query: 74 SSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 SPGG+ A + I+RA++ + +KP++ + +AAS GY IS +N I A +L SI Sbjct: 65 DSPGGAVGAAQEIYRALEIFRAHKKPIVVSMGSLAASGGYYISAPANYIYANPGTLTASI 124 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GV+ Y K L K+GV +K+ K P+ +++ +Q ++D++Y F+ Sbjct: 125 GVIIDYLNYKDLLKKIGVEQGDIKTGQYKDILVPWKKLSKDDKAYLQYLIDNTYEQFINA 184 Query: 193 VSESR--NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 + R I + L ++DGR+ TG +AK+VGL+D +G E+ + L + + Sbjct: 185 ILAYRSNKISKQELLSIADGRVLTGVQAKEVGLVDGIGNLEDAIKKAAELAHIK--HPVV 242 Query: 251 DWNPPKNYWFCDLKNLSISSLLE 273 + + + +L S L+ Sbjct: 243 VFYKKEKPFLKELMESSFGGTLD 265 >gi|322436182|ref|YP_004218394.1| signal peptide peptidase SppA, 36K type [Acidobacterium sp. MP5ACTX9] gi|321163909|gb|ADW69614.1| signal peptide peptidase SppA, 36K type [Acidobacterium sp. MP5ACTX9] Length = 353 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 125/290 (43%), Gaps = 13/290 (4%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPH--------VARIAIRGQIEDSQELIERIERISRDD 64 +++ + + +S + + ++ +A I I G I D+ ++ ++ + D Sbjct: 67 IVVVVGLFGAIVWSAAKSLGGDTTATTTFATSEIAVIDIDGVILDADKVDSQLRKFGDDS 126 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIV 122 S A+I+ ++SPGG A A + I+ + +V+ K + V + AS Y I+ A + I Sbjct: 127 SVKAIILHINSPGGGAAASQEIYHEVLRVRQEKHKKIVASVESVGASGAYYIASACDKIY 186 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A + S+VGSIGV+ ++ + + + + +K P ++ PK Q + Sbjct: 187 ANQASVVGSIGVIMEWTNYGDLMKWAKLKPVVIHAGELKDAGDPSRDMTPKEAAYFQALT 246 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 D+ Y FVR V+ R+ +K L+ G++WTG ++ +GLID +GG Sbjct: 247 DNMYGQFVRDVAAGRHTSTEKIQPLATGQVWTGEQSLPLGLIDKIGGFRVALMDTAHDVG 306 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 I N K L L + L+ G + +W Sbjct: 307 ISGEPAIVKPNSAKKGLAGLLSGEG-DDLFPNPTKLLDHA--PGFYFMWK 353 >gi|147921090|ref|YP_685099.1| putative periplasmic serine protease [uncultured methanogenic archaeon RC-I] gi|110620495|emb|CAJ35773.1| putative periplasmic serine protease [uncultured methanogenic archaeon RC-I] Length = 318 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 69/263 (26%), Positives = 124/263 (47%), Gaps = 11/263 (4%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQ-IED----------SQE 52 V+ + T + + + +S + VA I + G+ I D S Sbjct: 22 VMGIVLTAESIFIIAQAGMFSDIFSDITPVSPSKVAVIYVEGELITDNIPDGLGYASSNS 81 Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 +++ + + D S A+++ ++SPGG+ A + I+R I K KP++ + ++A SA Y Sbjct: 82 IVKHLRKAEEDKSIKAIVLRINSPGGTPVAAQEIYRQINKTSQVKPIVVSMGDIATSAAY 141 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 IS IVA + GSIGV++ + +K G+ KS P K + + +N Sbjct: 142 YISAPCTKIVANPDTFTGSIGVIWTFENKSGLYEKEGIQYYVAKSGPYKDVGADWRGLNE 201 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 + ++++ SY FV V+ R++ ++ L+DGR++TG EA+ +GL+D +GG E Sbjct: 202 NEKAYVNNIINQSYSRFVDAVASGRHMDREEVQRLADGRVYTGYEARDLGLVDDLGGMYE 261 Query: 233 VWQSLYALGVDQSIRKIKDWNPP 255 LG ++ N P Sbjct: 262 AIDIAAELGNISGKPEVTYVNDP 284 >gi|260220733|emb|CBA28590.1| hypothetical protein Csp_A07920 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 345 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 71/269 (26%), Positives = 121/269 (44%), Gaps = 13/269 (4%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISR 62 I+ ++ V + + + + ++PH A ++I G+I E ++ + Sbjct: 67 IRLAWLGFLCVVVWLGMQQSGTPSDISTPHTAVVSIHGEIASGNEASAEVVVASVRAAFE 126 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNI 120 D A A+++ ++SPGGS I I ++K +KPV V E ASA Y I+ A++ Sbjct: 127 DQGAKAVVLLINSPGGSPVQAGIINDEIHRLKALHKKPVYAVVEETCASAAYYIAVAADE 186 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 I + S+VGSIGVL ++KLGV + + + K PFS K Q Sbjct: 187 IYVDKASIVGSIGVLMDGFGFTGLMEKLGVERRLLTAGENKGFLDPFSPQTDKQRVFAQA 246 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 ++D + F+ +V E R +T + G WTG +A +GL D +G + V + + Sbjct: 247 MLDQIHQQFIGVVKEGRGKRLKETPDMFSGLFWTGQQAIDLGLADKLGNIDFVAREVVK- 305 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 +I D+ +N +K S Sbjct: 306 -----AEEIVDYTRKENVAERLVKRFGAS 329 >gi|323142045|ref|ZP_08076893.1| signal peptide peptidase SppA, 36K type [Phascolarctobacterium sp. YIT 12067] gi|322413432|gb|EFY04303.1| signal peptide peptidase SppA, 36K type [Phascolarctobacterium sp. YIT 12067] Length = 318 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 80/309 (25%), Positives = 141/309 (45%), Gaps = 26/309 (8%) Query: 4 VLKKIK-TRYVMLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQIEDSQE------- 52 +LKKI + ++L++++ V +++ E VA I I G I + Sbjct: 1 MLKKIFISAVLILAVLSFVVSLLKGNNNAEKTVTVPDRVAVINIYGTIISGADSKDNIFS 60 Query: 53 ---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVIT 101 ++++I + DDS AL++ + S GGSA A E + R +++ K + KP++ Sbjct: 61 QTNGVTSGSIMKQIREAAADDSVKALVLRIDSGGGSATAAEEVGRELKRFKEKTKKPIVA 120 Query: 102 EVHEMAASAGYLI-SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160 + ASA Y I CAS+ + A T+L GSIGV Y + K+G++ +KS P Sbjct: 121 TIGNTGASAAYWIAVCASDKVYANATTLTGSIGVYMPYMNTEELFKKIGITSNKIKSGPY 180 Query: 161 KAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKK 220 K S + P+ ++Q++V+ Y FV V+ R + K L+DGR++TG +AK Sbjct: 181 KDIMSSDRPMTPEEQAILQNIVNEIYEQFVTTVAVGRKMEESKVKSLADGRVYTGLQAKN 240 Query: 221 VGLIDVVGGQEEVWQSLYALGVDQ---SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 +GL+D +G + + LG + + W L + + + Sbjct: 241 LGLVDEIGDYYDALAAAGELGKIKPGADGLPPVKAKEKQQPWEFLLSAHIAELIKTELVN 300 Query: 278 LMKQTKVQG 286 + + Q Sbjct: 301 QLTGSLQQS 309 >gi|332878311|ref|ZP_08446037.1| signal peptide peptidase SppA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683762|gb|EGJ56633.1| signal peptide peptidase SppA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 588 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 64/274 (23%), Positives = 113/274 (41%), Gaps = 13/274 (4%) Query: 15 LSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDD 64 ++ + + V +A I G+I + +I + + +D Sbjct: 284 VNFIGIEDYAESVLKGKVSKEKDKIAVIYANGEIMQGEGNQGIVGHETIIAALRKAVKDK 343 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 A+++ ++SPGG A A E + R I + +K V + AAS GY I+C + I A Sbjct: 344 EIKAIVLRINSPGGDALASELMHREIALARKQKKVYVSMGNYAASGGYYIACNAERIFAE 403 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 S+ GSIGV P GV+ ++V + P + S F + + V+ M + V+ Sbjct: 404 AGSITGSIGVFGALPNASVLAKNWGVNAETVSTHPNALQYSYFQKPSEHFVKEMTESVEQ 463 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 Y F+ V+E R + ++ GR+W+G EA GL+D +G + + Sbjct: 464 IYKVFLSRVAEGRGKTVAEIDSIAQGRVWSGKEALAKGLVDELGSLNDAIAYAAKENGLE 523 Query: 245 SIRKIKDWNPP---KNYWFCDLKNLSISSLLEDT 275 + R + + K L SL ++ Sbjct: 524 NYRVVSYPHYKMDMKKLLLRYGLRLKNESLQQEL 557 Score = 92.4 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 37/273 (13%), Positives = 103/273 (37%), Gaps = 24/273 (8%) Query: 1 MEFVLKKIKTRYVMLSLVTLTV--VYFSWSSHVEDNSPHVARIAIRGQIEDSQE------ 52 + F + + L +++ + V S + V + + + D E Sbjct: 12 LGFFISLGVFFILFLIAISVMMSSVGASKGEEITVEDNTVLELDFQEPLTDFSEQVYFED 71 Query: 53 -------------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV 99 +++ IE D + + + + + RA++ K Sbjct: 72 FNYTSESFNGLNSVLQAIEIAKTDPHIKGISLKSAGNLSGIAFAQELRRALEDFKASGKF 131 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 + ++ + Y + ++ + ++ V G+ + + K +K G+ ++ ++ Sbjct: 132 VLAYNDEISQLDYYLQSVADKVYISQLGNVNLRGLSSEIFFYKDLQEKTGLRMEVIRHGK 191 Query: 160 MKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGA 216 K+ PF ++++ +++++ ++ V +++SRN+ +K ++ T Sbjct: 192 YKSAVEPFLENKMSDNNRLQTTELLNAMWNVLVTDIAKSRNLSVEKLNEIATNVDGRTAE 251 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 A++ GLID V ++E + L + I + Sbjct: 252 LAQQNGLIDGVLFRDEFEKILCEKVGKKEIDDV 284 >gi|108803542|ref|YP_643479.1| signal peptide peptidase A [Rubrobacter xylanophilus DSM 9941] gi|108764785|gb|ABG03667.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49 [Rubrobacter xylanophilus DSM 9941] Length = 340 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 72/281 (25%), Positives = 135/281 (48%), Gaps = 21/281 (7%) Query: 31 VEDNSPHVARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPG 77 + +A I + G I + L + + + D+S A++++++SPG Sbjct: 61 SGAGTQKIAVIPVEGTIASADSSLAGPVPIATPEGLRDALRQAREDESVRAVVLAVNSPG 120 Query: 78 GSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 G A + + AIQ + KPV+ + ++AAS GY IS A++ IVA ET+L GSIGV Sbjct: 121 GGVTASDLMHDAIQDFRRATDKPVVVSMGDVAASGGYYISTAADRIVANETTLTGSIGVF 180 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 K GV +KS KA +P++E+ ++ Q +VD Y FV ++ E Sbjct: 181 IPLLNFSEASKKYGVKQIYIKSGRFKAMGNPWNELTEDERRIFQSIVDQYYGEFVEVIVE 240 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 R++P + L+DGR+++G +A+++GL+D +G + + L R ++ Sbjct: 241 GRDLPEKRVRELADGRVYSGIQAERLGLVDRLGNLDTAVRVARDLAGVDEARVVRYV--- 297 Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQ---GLWAVWNP 293 ++ DL + +++ L++ + + ++ P Sbjct: 298 QSPGLLDLFLARLEQPEPESLQLLRAANLDLEAKPYYLYLP 338 >gi|296332070|ref|ZP_06874534.1| signal peptide peptidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675535|ref|YP_003867207.1| signal peptide peptidase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150841|gb|EFG91726.1| signal peptide peptidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413779|gb|ADM38898.1| signal peptide peptidase [Bacillus subtilis subsp. spizizenii str. W23] Length = 335 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 144/319 (45%), Gaps = 42/319 (13%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP------------------------HVARI 41 K+ + L + ++++ S E +A + Sbjct: 4 KRWIALVIALGIFGVSIIVSISMSFFESVKGAQTDLTSLTDESQEKTLENGSLSSKIAVL 63 Query: 42 AIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + G I+D+ + ++ +ER D + +++ ++SPGG Y I Sbjct: 64 EVSGTIQDNGDSSSLLGSDGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIH 123 Query: 88 RAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + ++++K +KP+ + MAAS GY IS A++ I A +L GS+GV+ + Sbjct: 124 KKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLA 183 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 DKLG+S +++KS K SP + + +MQ +VD+SY F+ ++SE R + + Sbjct: 184 DKLGISFETIKSGAHKDIMSPSRVMTKEEKNIMQSMVDNSYEGFIDVISEGRGMSKSEVK 243 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 ++DGR++ G +AKK+ L+D +G ++ ++ D + + +++ L + Sbjct: 244 KIADGRVYDGRQAKKLNLVDELGFYDDTISAMKKDHKDLKNASVISYE--ESFGLGSLFS 301 Query: 266 LSISSLLEDTIPLMKQTKV 284 + + + + I + ++ Sbjct: 302 MGANKMFKSEIDFLNMREI 320 >gi|316931462|ref|YP_004106444.1| signal peptide peptidase SppA, 36K type [Rhodopseudomonas palustris DX-1] gi|315599176|gb|ADU41711.1| signal peptide peptidase SppA, 36K type [Rhodopseudomonas palustris DX-1] Length = 326 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 88/287 (30%), Positives = 152/287 (52%), Gaps = 15/287 (5%) Query: 21 TVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSA 80 V+ + +ARI I G I + + +E ++R+ + S A+IV ++SPGG+ Sbjct: 37 GVMASPAGRGTLTTTGSIARIKIEGLIRSNNDRVEALDRLGK-SSYAAVIVHINSPGGTT 95 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 E + A+ ++K +KP++ V +AAS GY+ + AS I+A +TSLVGSIGVLFQYP Sbjct: 96 AGSEELHDALVRLKAKKPMVVVVEGLAASGGYIAALASEHIIAQQTSLVGSIGVLFQYPN 155 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + L +GV ++ VKSSP+KA P+ F +P+A ++ +V SY WF +V +SR + Sbjct: 156 LSELLKTVGVKVEEVKSSPLKAAPNGFEPTSPEARAAIESLVRDSYAWFRGMVQQSRKMT 215 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 D+ V++DGR++TG +A + LID +G ++ L +S ++D+ + Sbjct: 216 DDQLNVVADGRVFTGRQAVGLKLIDQLGDEKTAIAWLETAKNVKSGLPVRDYKLAPQFGD 275 Query: 261 CDLKNLSISSLLE--------------DTIPLMKQTKVQGLWAVWNP 293 + S + + +++ + G+ A+W P Sbjct: 276 LTFLRAAASIAFDAAGLSAVARRVEQTGAMQSVERLGLDGMLALWAP 322 >gi|328545804|ref|YP_004305913.1| Clp protease:peptidase U7:Signal peptide peptidase, SppA 36 kDa type [polymorphum gilvum SL003B-26A1] gi|326415544|gb|ADZ72607.1| Clp protease:Peptidase U7:Signal peptide peptidase, SppA 36 kDa type [Polymorphum gilvum SL003B-26A1] Length = 334 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 98/306 (32%), Positives = 160/306 (52%), Gaps = 18/306 (5%) Query: 5 LKKIKTRYVMLSLVTLTV------VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIE 58 L++ T + + + V L V S S H+ARI I G I D ++ I Sbjct: 14 LRRKLTFWRVAAFVILAAALIAALVSLSDVYGPTKRSAHIARIEIEGVILDDRDQRRMIA 73 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 I + + +IVS++SPGGS GEA++ A++ + +KP++ E+ + SAGY+++ A+ Sbjct: 74 GIGKSRAVQGVIVSINSPGGSTTGGEALYEALRDLAGKKPMVAEIRTLGTSAGYMVALAA 133 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + +VA S+ GSIGVLFQ+ ++ LD LGV++ +VKS P+KAEP +S+ +P A M+ Sbjct: 134 DHVVARHNSITGSIGVLFQFGNIERLLDTLGVAMDAVKSGPLKAEPDFYSQASPDARAML 193 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 + +V SY WFVRLV+E R + ++DG I TG AK+ GL+D +GG++ L Sbjct: 194 EALVGESYDWFVRLVAERRGLDETAARRVADGSIVTGFRAKESGLVDELGGEQAAIAWLA 253 Query: 239 ALGVDQSIRKIKDWNPPKN----YWFCDLKNLSISSLLEDTIPLMKQTK--------VQG 286 ++ + W + L + L E + + K + G Sbjct: 254 REKGLKADLPVITWKAKTETGSVPFASKLFGSIGAGLAEGALDALSGAKGLISPSLTLDG 313 Query: 287 LWAVWN 292 L +VW+ Sbjct: 314 LVSVWH 319 >gi|94311372|ref|YP_584582.1| peptidase S49 [Cupriavidus metallidurans CH34] gi|93355224|gb|ABF09313.1| Peptidase S49, periplasmic serine protease (ClpP class) [Cupriavidus metallidurans CH34] Length = 387 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 71/292 (24%), Positives = 120/292 (41%), Gaps = 17/292 (5%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIE-----DSQELIERIE 58 KI R++ L++V L + + H A + + G+I + + ++ Sbjct: 101 KIFFRFLTLAIVALILYAVIDFKGDVLSSTSGRHTAMVTLDGEIAAGTTASADSINAALQ 160 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAGYLIS 115 D SA +I+ ++SPGGS I I +K+ KP V E+ AS GY ++ Sbjct: 161 AAFEDTSAAGVILKINSPGGSPVQAGIINDEIHRLRKLYPDKPFYVVVEEICASGGYYVA 220 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL +DK+GV + S K PFS P+ Sbjct: 221 AAADKIYVDKASIVGSIGVLMDGFGFTGLMDKVGVQRRLYTSGANKGMLDPFSPEVPRQK 280 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 + ++ + F+ +V E R L G W+G A ++GL D +G + V + Sbjct: 281 GYAESMLKEIHQQFIDVVKEGRGDRLKNDPELFSGLFWSGERAVELGLADGLGSADYVAR 340 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 L+ I D+ +N K ++ +M V + Sbjct: 341 DLFK------AEDIVDYTVKENIAERMAKRFGAAAGSAAMKLMMMSATVPSV 386 >gi|240167730|ref|ZP_04746389.1| protease IV, Ssp [Mycobacterium kansasii ATCC 12478] Length = 596 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 68/283 (24%), Positives = 129/283 (45%), Gaps = 21/283 (7%) Query: 27 WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70 S + P +A + + G I + + ++ DDS +A++ Sbjct: 294 PSIPGRRSKPTIAVVTVEGPIVNGRGGPQGLPFGPSSAGGDTIAAALREVAADDSISAIV 353 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + + SPGGS A E I+R +++ + R K V+ + +AAS GY +S A++ IVA ++ Sbjct: 354 LRVDSPGGSVTASETIWREVKRARRRGKHVVASMGAVAASGGYYVSMAADAIVANPGTIT 413 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ V+ ++LGV ++++++ S P+ + D Y F Sbjct: 414 GSIGVITGKLVVRDLKERLGVGSETLRTNANADAWSIDEPFTPEQRARREAEADLFYGDF 473 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V V+E RN+ + V++ GR+WTGA+A + GL+D +GG + L + Sbjct: 474 VARVAEGRNLSTEAVDVVARGRVWTGADALERGLVDELGGFRTAVRRAKILAGLDEDTDV 533 Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288 + + P + L + ++ + D + + + G+ Sbjct: 534 RLVSYPGSSLLDLLLPRMSSRPAAASVPDAVGTLLIRSIAGVV 576 Score = 98.9 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 3/243 (1%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 ++ + I R + D +I + P A A + + AI KP + + Sbjct: 65 RDAVAAIHRAAEDPRVAGMIARVQLPPSPAGAVQELREAIAAFSAVKPSVAWAETYPGTL 124 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169 Y ++ A I + VG IG +++ LDK G+ + V K+ + F+E Sbjct: 125 SYYLASAFREIWLQPSGSVGLIGFASNAMFLRDALDKAGIEAEVVTRGEYKSAANLFTED 184 Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 + + +++S V+ESR I D L+D EA GLID +G Sbjct: 185 GYTDAHREAVTRMLESLQSQVWHAVAESRRIDVDVLNELADRAPLLRDEAVASGLIDRIG 244 Query: 229 GQEEVWQSLYALGVDQSI-RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 ++EV+ + L + + + D + + + S L +P + + + Sbjct: 245 FRDEVYARIAELVGIEGVSLESVDTDEKPPRMYLARYAGTARSRLAPPVPSIPGRRSKPT 304 Query: 288 WAV 290 AV Sbjct: 305 IAV 307 >gi|228472447|ref|ZP_04057209.1| signal peptide peptidase SppA, 67K type [Capnocytophaga gingivalis ATCC 33624] gi|228276132|gb|EEK14879.1| signal peptide peptidase SppA, 67K type [Capnocytophaga gingivalis ATCC 33624] Length = 596 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 68/263 (25%), Positives = 120/263 (45%), Gaps = 9/263 (3%) Query: 31 VEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAY 81 E + +A I G+I D + +I+ + D A+++ ++SPGGS Sbjct: 301 KEIKNDKIAVIFCDGEIIDGQSTAGRVGHETIIKALRDAREDKRVKAIVLRVNSPGGSGL 360 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 A E I R I + +KPV + +AAS GY ISC + I A +L GSIGV P + Sbjct: 361 ASELIHREIGLTQKKKPVYASMGNVAASGGYYISCNATRIFADRQTLTGSIGVFGVVPNL 420 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + G+ + V + P S F + K Q++ + +++ Y FV+ V++ R++ + Sbjct: 421 SELTQRWGIHSQQVSTHPYALSYSLFEKTPEKTRQVITEGIEAFYKKFVQRVADGRHMSW 480 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ L+ GR+WTG EA + GL+D +G E + + P F Sbjct: 481 EEVDALAQGRVWTGQEALEKGLVDEIGSLRETIAYAAKEQKLSEGKYLPVAYPIIEVNFM 540 Query: 262 DLKNLSISSLLEDTIPLMKQTKV 284 D + + + ++ Q ++ Sbjct: 541 DYMKQRFRASSQAELKMLLQEEI 563 Score = 83.5 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 35/285 (12%), Positives = 89/285 (31%), Gaps = 25/285 (8%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED----------------- 49 I + +L+ + + + + + + Sbjct: 15 FITLSIALFALIGIASTFAPKEEAFVVEDNAILELNFTEPVYEYGAPMRVKDFDYEIAQE 74 Query: 50 --SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 Q ++ I+ D +++ + I A++ K + E A Sbjct: 75 NTLQAILRAIKHAQEDPHIKGIVLGSTEGVEGKTHLADIRHAVEDFKKSGKFVYAFSEGA 134 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 + Y + ++ + V G+ + Y K +K GV ++ + K+ PF Sbjct: 135 SQYDYYLQSVADSVFVGTLGSVEVQGLSAEVLYYKDLQEKSGVHMEVFRHGKYKSAVEPF 194 Query: 168 SE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGAEAKKVGLI 224 E ++ + + + S ++ + VS SR + + ++D T A + L+ Sbjct: 195 LENTMSDANREQITSYLRSLWNSYAEAVSSSRGLSLSELDQVADSLWGRTPELALQHHLV 254 Query: 225 DVVGGQEEV---WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 D + +++ + ++ + + KNL Sbjct: 255 DRIAFRDQFEESVRKASKCKEVNDLQWVPIEKYTEKVTLDRKKNL 299 >gi|170695403|ref|ZP_02886548.1| peptidase S49 [Burkholderia graminis C4D1M] gi|170139594|gb|EDT07777.1| peptidase S49 [Burkholderia graminis C4D1M] Length = 331 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 72/288 (25%), Positives = 122/288 (42%), Gaps = 16/288 (5%) Query: 7 KIKTRYVMLSLVTLTV--VYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIER 59 KI R + L+LV V V+ + + H A IA+ G+I +++++ +E Sbjct: 47 KIFFRLLFLALVAFVVWTVFDFSGDKLAASGRHTALIALEGEISANTRANAEDISAALES 106 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISC 116 D +I+ SPGGS I+ +++++ + P I V +M AS GY + Sbjct: 107 AFEDSGTAGVILRCDSPGGSPVQAGIIYDQMRRLRAKHPSIPLYVVVGDMCASGGYYAAA 166 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 A + I + S+VGSIGVL +DKLG+ + S K PFS PK Q Sbjct: 167 AGDKIYVDKASIVGSIGVLMDSFGFTGLMDKLGIQRRLHTSGENKGFYDPFSPETPKMDQ 226 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q+++D + F+ V + R +T + G WTG ++ ++GL D G V + Sbjct: 227 HAQEMLDQIHAQFIEAVRQGRGKRLHETPDMFSGLFWTGQKSVELGLADGFGDANYVARE 286 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + I D+ ++ + + L K+ Sbjct: 287 IIK------APDIVDYTVKESITDRVARKFGAAVGNGAVHALALGGKL 328 >gi|78776884|ref|YP_393199.1| peptidase S49, SppA [Sulfurimonas denitrificans DSM 1251] gi|78497424|gb|ABB43964.1| Peptidase S49, SppA [Sulfurimonas denitrificans DSM 1251] Length = 289 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 60/241 (24%), Positives = 120/241 (49%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 F +K I+ + + V + + F+ S + ++ +I + G I + E++++I+ + Sbjct: 13 FTMKFIQEHFKAMIFVLILFLIFAPQSKEDLKPNNLEQINLVGPIMEVSEVLKQIDDAAA 72 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 + +++++ SPGG+ I AI++ + KPVI AS Y S ++ I+ Sbjct: 73 NHFVKGILLNVDSPGGAVAPSIEIAYAIKRARESKPVIVYASGTIASGSYYASIWADEII 132 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A S+VGSIGV+ Q V + K+G+ +SV++ K + E + V+ Sbjct: 133 ANPGSMVGSIGVIMQGADVSELMSKIGIKSQSVQAGKYKKVGASDREWTEYEKNELNKVI 192 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 +Y F + V+++R + +K ++ I+T ++AK+VGL+D +G + + L L Sbjct: 193 QGTYELFTKDVADARGLDINKRDFYANAHIFTASQAKEVGLVDTLGVSFDAKKRLIELSG 252 Query: 243 D 243 Sbjct: 253 V 253 >gi|85859094|ref|YP_461296.1| signal peptide peptidase [Syntrophus aciditrophicus SB] gi|85722185|gb|ABC77128.1| signal peptide peptidase [Syntrophus aciditrophicus SB] Length = 309 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 62/254 (24%), Positives = 124/254 (48%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPG 77 + V + + + I G I+DS ++++ ++ +DDS +++ ++SPG Sbjct: 23 LIYGVTSITGMRDGFTTADKIGIAPIDGVIKDSTDVVKNLQEFGKDDSVKGVVLRINSPG 82 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G + I+ A+ +++ +K V+ + +AAS GYLI+CA I+A +L GS+ + Sbjct: 83 GGVAPSQEIYEAVMELRKKKRVLVSMSSVAASGGYLIACAGEKIIANPGTLTGSVSAIMY 142 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + + + K+GV ++KS K SP E+ + ++Q +VD Y F+ +V +R Sbjct: 143 FTNAEELMKKVGVKASTIKSGKYKDIGSPIREMTGEEKALLQGLVDDIYIQFLDVVVRNR 202 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 I + ++DGRI+TG +A+++GL+D +G E + L + + Sbjct: 203 RISEEALKQIADGRIFTGKQAQQLGLVDYLGDMEYAVRMLAKMVGISGEPVVVYPQKKYE 262 Query: 258 YWFCDLKNLSISSL 271 + S++ Sbjct: 263 SMLDYFFERAGSTM 276 >gi|307720629|ref|YP_003891769.1| signal peptide peptidase SppA, 36K type [Sulfurimonas autotrophica DSM 16294] gi|306978722|gb|ADN08757.1| signal peptide peptidase SppA, 36K type [Sulfurimonas autotrophica DSM 16294] Length = 289 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 127/239 (53%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64 + I+ + + V + ++ F+ +S E + ++ +I + G I D+ E++E+I + + ++ Sbjct: 15 MNYIQNHFKAMVFVLILILIFAPASKKEFTNYNLQKINLSGPIVDATEIVEKINKAANNN 74 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 + +++S++SPGG+ I AI+++K +KPV+ AS Y S ++ I+A Sbjct: 75 AIKGVLLSVNSPGGAVSPSIEIAYAIKRLKIKKPVVAYAKGTMASGSYYASIWADKIIAN 134 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 S++GSIGV+ Q + ++K+G+ + VK+ K +P V + V+ Sbjct: 135 PGSMIGSIGVIMQGADLSGLMNKIGIKSQVVKAGLYKQIGTPDRPWKKYEVAELNKVIKG 194 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 +Y F + V+++R + + K ++ I+T A+AKKVGL+D +G + L L Sbjct: 195 TYDMFTKDVADARKLDFKKRDTYANAHIFTAAQAKKVGLVDQLGVEYNAKNELEKLSGV 253 >gi|298676111|ref|YP_003727861.1| signal peptide peptidase SppA [Methanohalobium evestigatum Z-7303] gi|298289099|gb|ADI75065.1| signal peptide peptidase SppA, 36K type [Methanohalobium evestigatum Z-7303] Length = 366 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 70/277 (25%), Positives = 133/277 (48%), Gaps = 14/277 (5%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQ-IEDS----------QELIER 56 I + + + + +++ + + VA I ++G I S +++ Sbjct: 69 IFFLLITIIAASFAAIVYTFDGDLYSTNDKVAVIHVQGTMITGSIPGGIGYSTSEDVASS 128 Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLIS 115 I + S A+++ ++SPGGS A E I R I++ K++ PV+ + ++AASA Y +S Sbjct: 129 IRKASDRSDVKAIVMRVNSPGGSPSAAEEISREIERAKDKGIPVVVSMGDVAASAAYYVS 188 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 +++I+A +++ GSIGV++ + F D+ G+ + +KS +K +P+ + + Sbjct: 189 APADVIMANPSTMTGSIGVIWTFQNRSEFYDEEGIEHEVIKSGELKDMGAPWRGLTEEER 248 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 +V Y FV V+E+R++ +SDGRI+TG AK++GL+D G E Sbjct: 249 NYANKIVQEIYKNFVDHVAENRDLNRSFVNEISDGRIYTGMRAKELGLVDKFGNLYESIN 308 Query: 236 SLYALGVDQSIRKIKDWNPP--KNYWFCDLKNLSISS 270 LG + + N P F + I++ Sbjct: 309 LAAELGDIRGEPDVIYLNKPSISRLLFSSKTDSGIAN 345 >gi|159026476|emb|CAO86448.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 603 Score = 147 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 69/278 (24%), Positives = 128/278 (46%), Gaps = 15/278 (5%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLS 74 Y S D++ +A + G I +L + + ++ + A+++ ++ Sbjct: 303 YASSLDEGGDSNNQIAIVYAEGTIVEGQGDRGEIGGDKLAKELRKLQGKEEVKAVVLRIN 362 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGGSA A E I R I+++ KPVI + ++AAS GY I+ I A ++ GSIGV Sbjct: 363 SPGGSATASEVILREIKRLDATKPVIISMGDVAASGGYWIAMGGQRIFADNDTITGSIGV 422 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 ++ + G+ +VK+ + + NP+ +++ Q V+ Y F+ V+ Sbjct: 423 FGLLLNIQKIANNNGIDWDTVKTGQLADISTITRPKNPQELEIYQAAVNRFYDLFIETVA 482 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 R + DK ++ GR+WTG +A K+GL+D +GG E Q ++++ Sbjct: 483 RGRKLSPDKVRTVAQGRVWTGKDAVKIGLVDQIGGLEVAVQYAAKTAELGDDWSLQEYPR 542 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 +++ L S+ L+ +P + + L W Sbjct: 543 SQSWQEELL-----SNFLQTYLPPLTKNNHP-LTQEWQ 574 Score = 80.0 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 83/204 (40%), Gaps = 5/204 (2%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGE--AIFRAIQKVKNRKPVITEVHEM 106 + +++I IE+ + DD+ L++ G + +A+ K + I Sbjct: 82 NLRQVIAAIEKAALDDNIVGLLLYGRDNIGEYGYATLTEVRQALAKFRQSGKKIIAYDME 141 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 Y ++ + ++ + G+ Q + L+K GV ++ VK K P Sbjct: 142 WTEKEYYLASVAETVIINPVGRMEINGLSSQQTFFADALEKYGVGVQVVKVGSFKGAVEP 201 Query: 167 F--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGL 223 + +++ + Q +Q ++D+ + + V++SRN+ + +SD I AKK G Sbjct: 202 YTRQDLSVQNRQQLQTLLDTIWSNYSSTVAKSRNLTPQQVQTISDTQGILEATTAKKAGF 261 Query: 224 IDVVGGQEEVWQSLYALGVDQSIR 247 +D V + V L + + Sbjct: 262 VDEVAYLDRVIVLAKDLTGEAKNK 285 >gi|162148930|ref|YP_001603391.1| peptidase [Gluconacetobacter diazotrophicus PAl 5] gi|209545314|ref|YP_002277543.1| signal peptide peptidase SppA, 36K type [Gluconacetobacter diazotrophicus PAl 5] gi|161787507|emb|CAP57103.1| putative peptidase [Gluconacetobacter diazotrophicus PAl 5] gi|209532991|gb|ACI52928.1| signal peptide peptidase SppA, 36K type [Gluconacetobacter diazotrophicus PAl 5] Length = 313 Score = 147 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 86/286 (30%), Positives = 150/286 (52%), Gaps = 6/286 (2%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISRDDSATALIV 71 +L+LV + S H+ R+ + G I D+++LI+ +++ ++ DS +I+ Sbjct: 29 FVLALVGVGGHSLMRSGGFAS-RDHLVRVRVAGIIGSDNRKLIDLVDKAAKTDSVRGMIL 87 Query: 72 SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 ++ SPGGS GEA+ A+ + RKPV + +AASAGY+IS + + A +++L GS Sbjct: 88 AVDSPGGSVSGGEALHDAVARFAARKPVAVTMGGLAASAGYMISVPAQRVFAVQSTLTGS 147 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IGV+ + P V LD++GV + + S PMK +PS ++P+ QM+Q VV + FV Sbjct: 148 IGVIMEAPDVSGLLDRVGVKVDQLVSGPMKGQPSGTQPLSPEGRQMLQGVVADLFDQFVT 207 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 +V++ R++P ++ L+DGR +TG +A +GLID +G + + L + + D Sbjct: 208 MVADGRHMPVERVRTLADGRPYTGRQALSLGLIDQIGDERDAKAWLTSTRHLSGTIPVVD 267 Query: 252 WN-PPKNYWFCDLKNLSISSLLEDTIP---LMKQTKVQGLWAVWNP 293 W + + + D L + + G A+W P Sbjct: 268 LKVTTGQGWMHRITRSMLGVVFGDEWAGSVLSQGVALDGAVAIWKP 313 >gi|89900513|ref|YP_522984.1| peptidase S49 [Rhodoferax ferrireducens T118] gi|89345250|gb|ABD69453.1| peptidase S49 [Rhodoferax ferrireducens T118] Length = 356 Score = 147 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 67/284 (23%), Positives = 122/284 (42%), Gaps = 14/284 (4%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERIS 61 I+ ++ ++ +V + PH A + I+G+I + ++ + Sbjct: 77 FIRLAWLAFFIIVAWLVISQNGASRAALKPHTAVVEIKGEIASGADASADAIVASLRDAF 136 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASN 119 D A A+++ ++SPGGS I + ++K + KPV V E ASA Y I+ A++ Sbjct: 137 EDAGAQAVVLLINSPGGSPVQAGIINDELHRLKAKHNKPVYAVVEETCASAAYYIAVAAD 196 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 I + S+VGSIGVL ++KLGV + + + K PFS K Q Sbjct: 197 KIYVDKASIVGSIGVLMDGFGFTGLMEKLGVERRLMTAGENKGFLDPFSPQTEKQRVFAQ 256 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 +++ + F+ +V R +T G W+G +A ++GL D G + V + + Sbjct: 257 AMLNQIHQQFIDVVKAGRGTRLKETPETFSGLFWSGQQAIELGLADQFGNLDFVAREVVK 316 Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 I D+ +N +K S + + + ++ T Sbjct: 317 ------AEDIIDYTRRENVAERLVKRFGAS-IGQGAVRAIQSTP 353 >gi|242277502|ref|YP_002989631.1| signal peptide peptidase SppA, 36K type [Desulfovibrio salexigens DSM 2638] gi|242120396|gb|ACS78092.1| signal peptide peptidase SppA, 36K type [Desulfovibrio salexigens DSM 2638] Length = 322 Score = 147 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 78/319 (24%), Positives = 141/319 (44%), Gaps = 30/319 (9%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP------------HVARIAIRGQIEDS-- 50 +KKI +L+ + L + + P V ++I G I D Sbjct: 1 MKKILLTIFILTSIALCGCQPKMNIFPDGTDPLLEKKLQGEGDYKVLVVSIDGTISDEGK 60 Query: 51 -----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-- 97 QE+ R++ + DD AL++ ++SPGGS A + ++ I + K + Sbjct: 61 RGLLGSSPSLVQEVSSRLKLAAEDDKIKALVLKINSPGGSVTASDILYNEIVRFKEKTGA 120 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 VI + ++AAS GY +S ++ I+A T+L GSIGV+F P V+ +DK+GVS++ KS Sbjct: 121 KVIVNMMDVAASGGYYVSLPADHIMAHPTTLTGSIGVIFIRPKVEGLMDKIGVSVEVSKS 180 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 K PF P+ +++ D++ F LV + R+I D+ + ++++ Sbjct: 181 GRNKDMGFPFKPDTPEQKKIIDDIIKDYADRFQGLVKKHRSISDDQLNTIFTAQVFSAQG 240 Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN---PPKNYWFCDLKNLSISSLLED 274 AKK GL+D +G + ++ L ++ + P + + + + S L + Sbjct: 241 AKKAGLVDSLGYLPDAVKTACKLAGISEDSQVVTYKRKSYPNDTLYNSASSQAFSPALIN 300 Query: 275 TIPLMKQTKVQGLWAVWNP 293 G +W P Sbjct: 301 IDAGNLMPPKAGFHYLWLP 319 >gi|28870992|ref|NP_793611.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. tomato str. DC3000] gi|28854241|gb|AAO57306.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. tomato str. DC3000] gi|331019162|gb|EGH99218.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 332 Score = 147 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 120/291 (41%), Gaps = 18/291 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61 K V V + + + S H A I ++G I D ++ + + Sbjct: 49 FFKLLTVAFLFVAIVLPMLDFEGGASRRSSHTALIDVQGVIADKESASAENITTALRDAF 108 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118 D+ +I+ ++SPGGS ++ I++++ KP I + AS Y I+ A+ Sbjct: 109 GDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAEKPNIKVYAVITDLGASGAYYIASAA 168 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I A + SLVGSIGV ++KLGV ++ S KA PF Q Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMEKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q V+D+++ F+ V R + G +WTG +A +GL+D +G V + Sbjct: 229 QSVLDTTHRQFIASVKLGRGDRLKDKDHPEMFSGLVWTGEQAVALGLVDGLGSASYVARE 288 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + I ++ ++ + K L S + + I ++ L Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFGGPSL 331 >gi|284053546|ref|ZP_06383756.1| signal peptide peptidase A [Arthrospira platensis str. Paraca] gi|291569284|dbj|BAI91556.1| protease IV [Arthrospira platensis NIES-39] Length = 602 Score = 147 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 9/254 (3%) Query: 32 EDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYA 82 ++ +A + G+I D E + R+ +D +++ ++SPGGSA A Sbjct: 315 PNSRNIIAVVYADGEIVDGRGGIGQVGGDRFSEELRRLRDNDRVKGIVLRVNSPGGSATA 374 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I R +Q + KP+I + AAS GY I+ S+ I A T++ GSIGV + Sbjct: 375 SEVIAREVQLTREEKPIIVSMGNAAASGGYWIAMGSDRIFAEPTTVTGSIGVFGLLFNAQ 434 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 ++ G++ VK+ P S + +Q +Q +VD Y FV V++ R++P + Sbjct: 435 DIANQNGITWDGVKTGPFADLNSISRPKTDQELQKVQQMVDFIYQRFVSSVAQLRDLPQE 494 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + L +S GR+W+G +A+ +GL+D +GG ++ ++ K+ ++ ++ Sbjct: 495 EVLEMSQGRVWSGVQAEALGLVDQLGGLQDAIAAVAEKAELGDDWKLAEYPRIPSFEERL 554 Query: 263 LKNLSISSLLEDTI 276 L++L + D + Sbjct: 555 LESLRTEATQADPL 568 Score = 80.4 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 94/241 (39%), Gaps = 15/241 (6%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-------LIERIERISRDDSATALI 70 V + + + +P +A I + + + ++E IER S+DD L Sbjct: 51 VLVLDLSVGIADTAPPPTPSIA---IGQTLREDRARFLPLRVVLETIERASKDDKIVGLY 107 Query: 71 VSLSS--PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 + SS + + RA++ K I Y + ++ I+ Sbjct: 108 LQGSSGTTPTGFGNLKEVRRALEGFKESGKTIIAYDTDWTEREYYLGSVADQIIIHPMGT 167 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSY 186 V G Q ++ L++ G+ ++ + K+ PF E++P+ Q MQ ++ + Sbjct: 168 VEMSGFSSQSVFLAGALERFGIGVQVTRVGQYKSAVEPFLRQEMSPENRQQMQQLLGDLW 227 Query: 187 HWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 F ++ SR++ + + + A+AK ++D + ++EV L L ++ Sbjct: 228 GEFTGAIASSRSLTTAQLQQIVNQDGFLMAADAKDREMVDHIAHRDEVAAKLRELTEEKE 287 Query: 246 I 246 Sbjct: 288 E 288 >gi|238026598|ref|YP_002910829.1| peptidase, U7 family protein [Burkholderia glumae BGR1] gi|237875792|gb|ACR28125.1| Peptidase, U7 family protein [Burkholderia glumae BGR1] Length = 330 Score = 147 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 67/289 (23%), Positives = 133/289 (46%), Gaps = 16/289 (5%) Query: 7 KIKTRYV-MLSLVTLTVVYFSWSSHVE-DNSPHVARIAIRGQIE-----DSQELIERIER 59 +I R++ ++++V + + F +S + +S H A ++I G+I ++ ++ ++ Sbjct: 46 RIAFRFLWLIAVVAIMLAVFDFSGDGKLSSSRHTALVSIDGEIAAGNSANADDINSALDD 105 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISC 116 D +++ ++SPGGS ++ I++++ + KP+ V +M AS GY I+ Sbjct: 106 AFDDSGTVGVVLHINSPGGSPVQAGIVYDEIRRLRKKYPSKPLYVVVSDMCASGGYYIAA 165 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 A++ I + S+VGSIGVL +DKLGV + S K PFS PK + Sbjct: 166 AADRIYVNKASIVGSIGVLMDGFGFTGLMDKLGVERRLHTSGENKGFYDPFSPETPKMDE 225 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q ++D + F++ V + R + + G WTGA++ ++GL D G + V + Sbjct: 226 HAQSMLDEIHAQFIQAVKDGRGKRLHDSPDIFSGLFWTGAKSVELGLADGFGTTDSVARD 285 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 + I D+ ++ + + + + V+ Sbjct: 286 VLK------APDIVDYTVKESLSSRVARRFGAAIGGGAVKSALSDSAVR 328 >gi|304312941|ref|YP_003812539.1| Peptidase S49 [gamma proteobacterium HdN1] gi|301798674|emb|CBL46906.1| Peptidase S49 [gamma proteobacterium HdN1] Length = 335 Score = 147 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 65/292 (22%), Positives = 136/292 (46%), Gaps = 16/292 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 K + Y ++L +V + S + +S HV + + G I D+ ++ + ++ Sbjct: 50 FFKLLMFVYFFVALAMFSVNWDSGEDSMGASSDHVGVVDLDGMIMAGGDNDADQISKGLQ 109 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115 R + ++ A+++ ++SPGGS I+R I++++ + K + + ++ AS Y ++ Sbjct: 110 RAFKAQNSKAVLLRINSPGGSPVQSATIYREIKRLRAKYPSKKLYAVITDVGASGAYYVA 169 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I A +SLVGSIGV+ + ++KLG+ + + S KA PFS + P Sbjct: 170 AAADEIYADPSSLVGSIGVISEGFGFVGGMEKLGIERRLITSGKNKAFLDPFSPLAPAHK 229 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 +V++ + F+ V + R + + G +W+G +A +GLID G V + Sbjct: 230 AYFSEVLNVVHQQFINAVKDGRGDRLKDSPDMFSGLVWSGEQALPLGLIDGYGSPGSVVR 289 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS--SLLEDTIPLMKQTKVQ 285 + L +K D+ + + ++ S + + L +++ Sbjct: 290 DVIHL------KKTVDYTAKTSPFESFARSFGASFGKSVAAELGLTSDLQLR 335 >gi|261418196|ref|YP_003251878.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. Y412MC61] gi|319767844|ref|YP_004133345.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. Y412MC52] gi|261374653|gb|ACX77396.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. Y412MC61] gi|317112710|gb|ADU95202.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. Y412MC52] Length = 335 Score = 147 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 73/293 (24%), Positives = 136/293 (46%), Gaps = 21/293 (7%) Query: 20 LTVVYFSWSSHVEDNSP---HVARIAIRGQIEDS--------------QELIERIERISR 62 L ++ +S V +A + + G I+D+ Q ++ I++ Sbjct: 41 LALMESPFSEEVIAEGDPLKKIAVLEVNGVIQDAGEAESFLSSSQYNHQTFLQMIKQAKE 100 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNI 120 D A+I+ ++SPGG I+ + K+K + KP+ + MAAS GY I+ A + Sbjct: 101 DQDVKAIILRINSPGGGVAESAEIYDQLMKLKKKTNKPIYVSMGAMAASGGYYIAAAGDK 160 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 I A+ ++ GSIGV+ Q + K GV + ++KS P K +P ++ +++Q Sbjct: 161 IFASPETITGSIGVIMQSVNYEGLAKKYGVELVTIKSGPYKDIMNPARKMTEAEREILQR 220 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +++ SY FV +V++ R +P D L+DGRI+ G +AK++ L+D G ++ +L Sbjct: 221 LINDSYDAFVDVVAKGRKLPEDTVRKLADGRIYDGRQAKELRLVDEFGYLDDAIAALKKE 280 Query: 241 GVDQSIRKIKDWN--PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 + +K N P + + + S I L+ + L ++ Sbjct: 281 HHLTGAQVVKYVNDAPWSSLFEMVSNRMKPDSEAAGLIRLLSRPSSPRLMYLY 333 >gi|302037855|ref|YP_003798177.1| putative signal peptide peptidase SppA [Candidatus Nitrospira defluvii] gi|300605919|emb|CBK42252.1| putative Signal peptide peptidase SppA [Candidatus Nitrospira defluvii] Length = 358 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 70/283 (24%), Positives = 131/283 (46%), Gaps = 21/283 (7%) Query: 31 VEDNSPHVARIAIRGQIEDS------------QELIERIERISRDDSATALIVSLSSPGG 78 V + + G I + E +ER ++D+ A+++ ++SPGG Sbjct: 77 SGTGKDKVLLMDVSGVISSENKDGFYSSPGMLATVKEELERATKDERIKAIVLRINSPGG 136 Query: 79 SAYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 + A + I+ ++ K + P++ + ++ AS GY I+ A++ + A +++ GSIGV+ Sbjct: 137 TVTASDIIYHELKSFKTSRKIPIVASIMDVGASGGYYIAAAADTVFAHPSTVTGSIGVIM 196 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + L+K+GV +V S P K SPF + P+ + Q V+D Y F+++V + Sbjct: 197 LTVNARGLLEKVGVETNAVTSGPRKDMGSPFRAMLPEERAIFQGVIDGFYQRFLQVVQDG 256 Query: 197 R-NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 R N+ + L+DGRI++G +AK GL+D +G E+ + K+ + P Sbjct: 257 RPNMNGETIRKLADGRIYSGEQAKAAGLVDDIGYLEDAIELAKKKAGLTEA-KVVTYRRP 315 Query: 256 KNYWFCDLKNL-----SISSLLEDTIPLMKQTKVQGLWAVWNP 293 Y L S++SL + + + +W P Sbjct: 316 GEYQNNIYSRLVAPAPSLASLANIDLLSVVRGGSPQFMYLWMP 358 >gi|183981078|ref|YP_001849369.1| protease IV, Ssp [Mycobacterium marinum M] gi|183174404|gb|ACC39514.1| protease iv, Ssp [Mycobacterium marinum M] Length = 600 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 68/275 (24%), Positives = 124/275 (45%), Gaps = 17/275 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70 S P +A +++ G I + + ++ DD +A++ Sbjct: 298 PSIPGRRGKPTIAVVSVEGPIVNGRGGPQGLPLGPSSAGGDTIASALREVAADDEVSAIV 357 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + + SPGGS A E I+R +Q+ ++R KPV+ + +AAS GY +S ++ IVA ++ Sbjct: 358 LRVDSPGGSVTASETIWREVQRARDRGKPVVASMGSIAASGGYYVSMGADAIVANPGTIT 417 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ V+ D+LGV ++++++ S + + + D Y F Sbjct: 418 GSIGVITGKLVVRDLKDRLGVGSETLRTNANADAWSIDAPFTDEQRARREAEADMFYTDF 477 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V V+ RN+ + ++ GR+WTGA+A + GL+D +GG + L ++ Sbjct: 478 VERVARGRNLRTEDVDAVARGRVWTGADALERGLVDELGGFRTAVRRAKVLAGLDEDTEV 537 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + P + L S + ++P T V Sbjct: 538 RLVGYPGSSLLDLLWPRGSSRPVAASVPEAVGTLV 572 Score = 92.8 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 2/231 (0%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79 + + + I+ G+ ++ + + R + D LI + P Sbjct: 38 ILEFNLRTMPAESNGFDPLLIISGGGRPMALRDAVAALHRGAEDPRVAGLIARVQLPPAP 97 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A + + AI KP + + Y ++ A I + G IG Sbjct: 98 IGAVQELREAIAAFSAVKPSVAWAETYPGTLSYYLATAFREIWMQPSGEAGLIGFASNAM 157 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESR 197 +++ LDK+G+ + V K+ F+E + + +++S + V++SR Sbjct: 158 FLRDALDKVGIEAQFVARGEYKSAADLFTEDGYTDANREAVTRMLESLQDQVWQAVAQSR 217 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 I L+D EA GLID +G ++E + + L + + Sbjct: 218 QIDAGVLDELADKAPLLRDEALSSGLIDRIGFRDEAYARIAELAGVEGVSP 268 >gi|212703644|ref|ZP_03311772.1| hypothetical protein DESPIG_01689 [Desulfovibrio piger ATCC 29098] gi|212672939|gb|EEB33422.1| hypothetical protein DESPIG_01689 [Desulfovibrio piger ATCC 29098] Length = 363 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 68/261 (26%), Positives = 123/261 (47%), Gaps = 3/261 (1%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 F S S +A + + G I D + I+++ R ++V + SPGG A A Sbjct: 100 AAFMVSQATGLGSERIALVRVTGPIMDIDAQLRWIDKLGRMPGVKGVLVRVDSPGGGAAA 159 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + ++ A+ ++ KP+ + AAS G ++S A + A +++ GSIGV P ++ Sbjct: 160 SQELYEALARLGKDKPIAVSMGSTAASGGLMVSMAGKRVFANASTVTGSIGVRMDIPQIR 219 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LDKLG+ +++ ++P K S + Q V+ + FV +V++ R++ Sbjct: 220 GLLDKLGLGRQTLTTAPYKDAGSMLEPLTADEKAYFQGVLKDMHEQFVDIVAQGRHMDRT 279 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + L+ G+I+TG EA ++GL+D +GGQ+ + L + + R + +W Sbjct: 280 RAARLATGKIFTGREAVELGLVDELGGQQAAHRWLADVCKVPADRPLLTPPSEDEWWEKS 339 Query: 263 LK---NLSISSLLEDTIPLMK 280 LK L +LL P Sbjct: 340 LKTWFGLDADALLGREAPAFL 360 >gi|291485382|dbj|BAI86457.1| signal peptide peptidase [Bacillus subtilis subsp. natto BEST195] Length = 335 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 146/319 (45%), Gaps = 42/319 (13%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP------------------------HVARI 41 K+ + L + ++++ S E +A + Sbjct: 4 KRWIALVIALGIFGVSIIVSISMSFFESVKGAQTDLTSLTDESQEKTLENGSLSSKIAVL 63 Query: 42 AIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + G I+D+ + ++ +ER D + +++ ++SPGG Y I Sbjct: 64 EVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIH 123 Query: 88 RAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + ++++K +KP+ + MAAS GY IS A++ I A +L GS+GV+ + Sbjct: 124 KKLEEIKKETKKPIYVSMGSMAASGGYYISAAADKIFATPETLTGSLGVIMESVNYSKLA 183 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 DKLG+S +++KS K SP E+ + +MQ +VD+SY FV ++S+ R++ + Sbjct: 184 DKLGISFETIKSGAHKDIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRSMSKAEVK 243 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 ++DGR++ G +AKK+ L+D +G ++ ++ D + + +++ L + Sbjct: 244 KIADGRVYDGRQAKKLNLVDELGFYDDTITAMKKDHKDLKNASVISYE--ESFGLGSLFS 301 Query: 266 LSISSLLEDTIPLMKQTKV 284 + + + + I + ++ Sbjct: 302 MGANKMFKSEIDFLNMREI 320 >gi|288940470|ref|YP_003442710.1| peptidase S49 [Allochromatium vinosum DSM 180] gi|288895842|gb|ADC61678.1| peptidase S49 [Allochromatium vinosum DSM 180] Length = 336 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 65/302 (21%), Positives = 120/302 (39%), Gaps = 27/302 (8%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSW-----SSHVEDNSPHVARIAIRGQIEDSQE-----LI 54 ++ T + +L LV L V + S V+ H A I I+G I + +I Sbjct: 40 RRRWATAFKLLILVYLIGVLIAANSTGLSDAVKVGEDHTALIEIKGVIASDSDASADRVI 99 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---------KPVITEVHE 105 + +++ ++SPGGS I I+++K + PV + Sbjct: 100 TALRAAFEAKHVKGIVLRINSPGGSPVQAGYINDEIKRLKAKYKKDHDGKDMPVYAVAVD 159 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 + AS GY ++ ++ I + SLVGSIGV + + +LG+ + + + K Sbjct: 160 LCASGGYYVAVGADAIYVDKASLVGSIGVRIDSFGFQEAMQELGIERRLLTAGANKGILD 219 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 PFS + +Q V+D + F+ V + R L G W+G EA ++GL D Sbjct: 220 PFSPLGDSQRAFIQSVLDRLHGQFIDAVKQGRGDKLKGGDELFSGLFWSGQEAVELGLAD 279 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI--SSLLEDTIPLMKQTK 283 +G +V + L KI ++ ++ K + + + + + Sbjct: 280 GLGSSSQVARELIK------AEKIVEYTEKRDLLESIAKRFGALVGAGMLEGLGVSTGLS 333 Query: 284 VQ 285 + Sbjct: 334 LP 335 >gi|207743609|ref|YP_002260001.1| protease protein [Ralstonia solanacearum IPO1609] gi|206595008|emb|CAQ61935.1| protease protein [Ralstonia solanacearum IPO1609] Length = 416 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 70/291 (24%), Positives = 129/291 (44%), Gaps = 15/291 (5%) Query: 7 KIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60 +I R+V L ++ + F S+ + H A +++ G+I ++ + +E Sbjct: 130 RIFFRFVTLGILGGLLYLFASFEGETVGSGRHTAVVSLDGEIAASTNASAENINASLEAA 189 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCA 117 DD+ +I+ ++SPGGS I I++++ + I V EM AS GY ++ A Sbjct: 190 FADDNTAGVILKINSPGGSPVQAGMINDDIRRLRAKHKDIPLYVVVEEMCASGGYYVAAA 249 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 ++ I + S+VGSIGVL +DK+GV + + + K PFS V P+ Q Sbjct: 250 ADKIYVDKASIVGSIGVLMDGFGFTGLMDKVGVERRLLTAGANKGMLDPFSPVPPQQRQF 309 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 Q ++D + F+ +V + R L G WTG++A ++GL D +G + V + Sbjct: 310 AQAMLDEVHQQFIDVVKQGRGSRLKDDPQLFSGLFWTGSKAVELGLADGIGSADFVAR-- 367 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + D+ +N+ + + L +++ L Sbjct: 368 ----NVIKAPDMVDYTVKENFAERVARKFGTAMGAGAIKALAATGQLKLLM 414 >gi|56421326|ref|YP_148644.1| protease [Geobacillus kaustophilus HTA426] gi|56381168|dbj|BAD77076.1| protease IV (signal peptide peptidase) [Geobacillus kaustophilus HTA426] Length = 335 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 73/293 (24%), Positives = 135/293 (46%), Gaps = 21/293 (7%) Query: 20 LTVVYFSWSSHVEDNSP---HVARIAIRGQIEDS--------------QELIERIERISR 62 L ++ +S V +A + + G I+D+ Q ++ I++ Sbjct: 41 LALMESPFSEEVIAEGDPLKKIAVLEVNGVIQDAGEAESLLSSSQYNHQTFLQMIKQAKE 100 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNI 120 D A+I+ ++SPGG I+ + K+K + KP+ + MAAS GY I+ A + Sbjct: 101 DQDVKAIILRINSPGGGVAESAEIYDQLMKLKKKTNKPIYVSMGAMAASGGYYIAAAGDK 160 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 I A+ ++ GSIGV+ Q + K GV + ++KS P K +P ++ +++Q Sbjct: 161 IFASPETITGSIGVIMQSVNYEGLAKKYGVELVTIKSGPYKDIMNPARKMTEAERKILQR 220 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +++ SY FV +V++ R +P D L+DGRI+ G +AK + L+D G ++ +L Sbjct: 221 LINDSYDAFVDVVAKGRKLPEDTVRKLADGRIYDGRQAKALRLVDEFGYLDDAIAALKKE 280 Query: 241 GVDQSIRKIKDWN--PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 + +K N P + + + S I L+ + L ++ Sbjct: 281 HHLTGAQVVKYVNDAPWSSLFEMVSNRMKPDSEAAGLIRLLSRPSSPRLMYLY 333 >gi|134095273|ref|YP_001100348.1| putative signal peptide peptidase [Herminiimonas arsenicoxydans] gi|133739176|emb|CAL62225.1| Putative peptidase S49 [Herminiimonas arsenicoxydans] Length = 334 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 72/286 (25%), Positives = 124/286 (43%), Gaps = 16/286 (5%) Query: 8 IKTRYVMLSLVTLTVVYFSWSS--HVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60 I ++ L L+ + S +E+ PH A I I G I D++ +I + + Sbjct: 51 IFFKFTTLLLIAFALWTSFGPSVSDMENVGPHTALIKIEGTIEAKGAGDAETVISALTKA 110 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCA 117 D + LI+ ++SPGGS I I ++ +KP+ V+E+ AS GY I+ A Sbjct: 111 YADPGSVGLILQINSPGGSPVQAGIINDEITRLRKKYPKKPLYVVVNEICASGGYYIASA 170 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 ++ I + S+VGSIGVL ++KLGV + + + K PFS K + Sbjct: 171 ADRIYVNKASIVGSIGVLMDGFGFTGTMEKLGVERRLLTAGENKGFLDPFSPQTEKQKEY 230 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 Q +++ + F+ +V R +T + G W+GA++ ++GL D G E V + Sbjct: 231 AQGMLNEIHQQFIDVVRTGRGKRLKETPEIFSGLFWSGAKSVELGLADGFGTVESVARD- 289 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 + I D+ + L+ ++ QT Sbjct: 290 -----EFKATNIVDYTQREGLSDRVLRKFGAAAGESAVKSFAAQTA 330 >gi|52081444|ref|YP_080235.1| signal peptide peptidase [Bacillus licheniformis ATCC 14580] gi|52786819|ref|YP_092648.1| hypothetical protein BLi03092 [Bacillus licheniformis ATCC 14580] gi|319647352|ref|ZP_08001574.1| SppA protein [Bacillus sp. BT1B_CT2] gi|52004655|gb|AAU24597.1| signal peptide peptidase [Bacillus licheniformis ATCC 14580] gi|52349321|gb|AAU41955.1| SppA [Bacillus licheniformis ATCC 14580] gi|317390699|gb|EFV71504.1| SppA protein [Bacillus sp. BT1B_CT2] Length = 335 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 133/282 (47%), Gaps = 20/282 (7%) Query: 30 HVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSS 75 ++S +A + + G I D+ + ++ +E+ D + +++ ++S Sbjct: 52 EQGNSSRKIAVLEVNGTISDNGGASGLFSSEGYNHRSFLQMLEKAKDDSAVKGIVLRVNS 111 Query: 76 PGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 PGG Y I + ++++K +KP+ + MAAS GY IS ++ I AA +L GS+G Sbjct: 112 PGGGVYESAEIHKKLEEIKKDTKKPIYVSMGSMAASGGYYISTPADKIFAAPDTLTGSLG 171 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V+ + +KLG+ +++KS K SP ++ K ++MQ +VD +Y FV ++ Sbjct: 172 VIMESLNYSKLAEKLGLKTETIKSGEFKDIMSPTRDMTKKEREIMQSMVDDAYEGFVDVI 231 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 +E R + + ++DGR++ G +AK+ LID +G E+ +++ + + + + Sbjct: 232 AEGRGMSENDVKKIADGRVYDGRQAKQNHLIDELGYYEDAVKAMKKDHKNLAGASVVSYE 291 Query: 254 PPKN----YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 + K + + + Q+ L ++ Sbjct: 292 ESAGLASLFSMTANKMFKSEADFLNIKEAISQSGAPRLMYLY 333 >gi|55981463|ref|YP_144760.1| putative protease [Thermus thermophilus HB8] gi|55772876|dbj|BAD71317.1| putative protease [Thermus thermophilus HB8] Length = 301 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 74/300 (24%), Positives = 139/300 (46%), Gaps = 17/300 (5%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP-----------HVARIAIRGQIEDS--- 50 K+ + L + L V ++ P V + + G+I Sbjct: 3 RKRWLALALFLGVALLVVGLGRLTASPPAQGPWRETTLYGQGEKVLLLELLGEIPSGKAL 62 Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + + ++ + D+ A+++ + SPGG EA+ RA++ + KP++ + +AAS Sbjct: 63 ERFLSQVRQAREDEGVRAVVLYVESPGGGVTETEALHRALRALAQEKPLVASLGRVAASG 122 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 GY ++ A+ I+ T++ GSIGV+ P V L K+GV ++ +K +K SP + Sbjct: 123 GYYVATAAREILVPPTAVTGSIGVVGYLPQVGELLAKVGVRVEVLKEGRLKDMASPLRPL 182 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 P+ +++Q ++ +Y FV+ V+E R +P +K L L+DGRI++G +A +GL D G Sbjct: 183 TPEEREVVQGLLREAYELFVQRVAEGRGMPREKVLALADGRIYSGKQAVALGLADREGYL 242 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS--ISSLLEDTIPLMKQTKVQGLW 288 E+ + L ++ ++ + PK LL+ + + GLW Sbjct: 243 EDAARRAAELAGLKAF-RLVRYTRPKGLLEGLWGEEVPWAQGLLQARFRVEYRYLGGGLW 301 >gi|167837368|ref|ZP_02464251.1| peptidase, U7 family protein [Burkholderia thailandensis MSMB43] Length = 333 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 63/289 (21%), Positives = 123/289 (42%), Gaps = 17/289 (5%) Query: 7 KIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 +I R+ L ++ F S + H A + I G+I +++++ ++ Sbjct: 48 RIFFRFAFLVVLGALAFAFLSVSGDGSKLASGRHTAVVTIEGEIAASTNANAEDINTALD 107 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115 D +++ ++SPGGS ++ I++++ + KP+ V +M AS GY I+ Sbjct: 108 SAFEDSGTVGVVLKINSPGGSPVQAGIVYDEIRRLRKKYPGKPLYVVVSDMCASGGYYIA 167 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL + KLGV + S K PFS PK Sbjct: 168 AAADKIYVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFFDPFSPETPKMD 227 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q ++D + F++ V + R ++ + G WTGA++ ++GL D G + V + Sbjct: 228 AHAQAMLDQIHEQFIKAVKDGRGARLHESPDIFSGLFWTGAKSIELGLADDYGTTDTVAR 287 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + + D+ ++ + + + ++ Sbjct: 288 DVLK------APDLVDYTVKESLTDRVARRFGAAVGKAALKAAVAGGEL 330 >gi|270294203|ref|ZP_06200405.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. D20] gi|270275670|gb|EFA21530.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. D20] Length = 589 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 71/270 (26%), Positives = 131/270 (48%), Gaps = 13/270 (4%) Query: 30 HVEDNSPHVARIAIRGQI------------EDSQELIERIERISRDDSATALIVSLSSPG 77 + + +A G+I DS+++I+ + ++ D+ A+++ ++SPG Sbjct: 298 PKDKSGNVIAVYYAYGEIDGGSSSASSEEGIDSKKVIKDLRKLKDDEDVKAVVLRVNSPG 357 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 GSAY E I+ A+ ++K KPVI + + AAS GY ISC ++ IVA T+L GSIG+ Sbjct: 358 GSAYGSEQIWYAVSELKKEKPVIVSMGDYAASGGYYISCNADTIVAEPTTLTGSIGIFGM 417 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 +P K DK+GV+ VK++ +N +MQ V++ Y F+ S+ R Sbjct: 418 FPNAKGLTDKIGVNFDVVKTNKYADFGMLTRPMNDGEKGLMQMYVNNGYDLFLTRCSDGR 477 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 I + ++ GR+WTG++AK++GL+D +GG ++ A + + ++ Sbjct: 478 GISKEDLDKIAQGRVWTGSKAKELGLVDELGGLDKALDIAIAKAGV-DAYTVMSYPKKES 536 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 ++ + + + + Q Sbjct: 537 FFESLMNTNPGNYIKARMLKGTMGEIYQQF 566 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 42/254 (16%), Positives = 95/254 (37%), Gaps = 23/254 (9%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQELIERIE 58 + + + S S + + + + G + +++ I+ Sbjct: 28 LVVFSMVSSSESETQVRKNSIMMLDLNGALAERSQDNPFDALMGDNYKTYGLDDILSSIK 87 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 + +D + + +S G + E I A++ K I + + Y +S + Sbjct: 88 KAKENDDIKGIYIEATSLGAGFASREEIRNALKDFKESGKFIVAYGDSYSQGLYYLSSVA 147 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQ 176 + ++ +V G+ + K L K+GV ++ K K+ PF +E++P + Sbjct: 148 DKVLLNPQGMVEWRGLAATPMFFKDLLAKIGVEMQIFKVGTYKSAVEPFISTEMSPANRE 207 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLIDVVGGQEEVW 234 + + S + V+ESR I D ++D + E+ + GL+D + + +V Sbjct: 208 QIDAYLTSIWGQVTNDVAESRKISVDSLNAIADRMLMFYPAEESVQCGLVDTLIYKNDVR 267 Query: 235 QSLYALGVDQSIRK 248 L A+ + Sbjct: 268 NYLKAMVGIDKDDR 281 >gi|255536295|ref|YP_003096666.1| putative protease IV [Flavobacteriaceae bacterium 3519-10] gi|255342491|gb|ACU08604.1| putative protease IV [Flavobacteriaceae bacterium 3519-10] Length = 584 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 67/269 (24%), Positives = 130/269 (48%), Gaps = 9/269 (3%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------SQELIERIERISRDDSATAL 69 ++ S+ +A + G I S++LI+ I+++++++ + Sbjct: 285 ISFNKYIGSYKEDNIKKDNQIAVLYASGAIYSGEGIDGIYSEDLIKEIKKLTKNEKVKGV 344 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 ++ ++SPGGSA A + I +Q++K +KP+I + AAS GY I+ A++ I A +L Sbjct: 345 VLRINSPGGSANASDEILFELQQLKAKKPLIVSFGDYAASGGYYIAMAADRIYAEPNTLT 404 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV +PY K +K G+S SV ++ S + + P +MQ V+ +Y F Sbjct: 405 GSIGVFGVFPYFKEIANKNGLSAHSVNTNANSNMFSTINGITPGGAAVMQKSVEMTYKRF 464 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V V+++RN + + + GR+W+G AK++GL+D +G + + + + Sbjct: 465 VHFVTQNRNRSFAQIDEIGGGRVWSGIRAKQIGLVDEIGNLNDAVKFAAQQAKLKD-YNV 523 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPL 278 + + + K++ L + Sbjct: 524 ASYPKKVSQFEQLFKDMDQEQLTTKLLKS 552 Score = 79.7 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 38/314 (12%), Positives = 107/314 (34%), Gaps = 32/314 (10%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------- 51 + + ++M ++ + + S+ + V + + I DS Sbjct: 15 ILLLGGFFIMFVILMVAYSAITDSNKSAIPNNSVLTLDFKTNIIDSPLEDSDKIFDFAEK 74 Query: 52 -------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH 104 +++E I++ DD + + + I A+Q + + Sbjct: 75 QNNIMVYDMVEAIQKAETDDKIKGISIETDGLSAGMTQIDNIRTALQNFRKSGKFVYAYG 134 Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 + + Y + ++ + G+ + Y+K F +K G+ I+ ++ K+ Sbjct: 135 NTVSQSAYYLGSVADRYYLNPAGGIDLKGLSTEVLYLKSFAEKFGIGIEVIRHGKYKSAV 194 Query: 165 SPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK----TLVLSDGRIWTGAEA 218 PF +++P+ + + ++ + R ++ SR + + L + Sbjct: 195 EPFLRDDMSPENKEQLSTLLTDLWMPTARNIASSRKMDTAQFRTAVDSLYGA---IPDLS 251 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW---NPPKNYWFCDLKNLSISSLLEDT 275 L D + + E L + K+ + +Y ++K + ++L + Sbjct: 252 LSHKLADKLIQKSEYDNLLKTKLNLKEKDKLNNISFNKYIGSYKEDNIKKDNQIAVLYAS 311 Query: 276 IPLMKQTKVQGLWA 289 + + G+++ Sbjct: 312 GAIYSGEGIDGIYS 325 >gi|46199432|ref|YP_005099.1| putative protease IV transmembrane protein [Thermus thermophilus HB27] gi|46197058|gb|AAS81472.1| putative protease IV transmembrane protein [Thermus thermophilus HB27] Length = 301 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 74/300 (24%), Positives = 139/300 (46%), Gaps = 17/300 (5%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP-----------HVARIAIRGQIEDS--- 50 K+ + L + L V ++ P V + + G+I Sbjct: 3 RKRWLALALFLGVALLVVGLGRLTARPPAQGPWRETTLYGQGEKVLLLELLGEIPSGKAL 62 Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + + ++ + D+ A+++ + SPGG EA+ RA++ + KP++ + +AAS Sbjct: 63 ERFLSQVRQAREDEGVRAVVLYVESPGGGVTETEALHRALRALAQEKPLVASLGRVAASG 122 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 GY ++ A+ I+ T++ GSIGV+ P V L K+GV ++ +K +K SP + Sbjct: 123 GYYVATAAREILVPPTAVTGSIGVVGYLPQVGELLAKVGVRVEVLKEGRLKDMASPLRPL 182 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 P+ +++Q ++ +Y FV+ V+E R +P +K L L+DGRI++G +A +GL D G Sbjct: 183 TPEEREVVQGLLREAYELFVQRVAEGRGMPREKVLALADGRIYSGKQAVALGLADREGYL 242 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS--ISSLLEDTIPLMKQTKVQGLW 288 E+ + L ++ ++ + PK LL+ + + GLW Sbjct: 243 EDAARRAAELAGLKAF-RLVRYTRPKGLLEGLWGEEVPWAQGLLQARFRVEYRYLGGGLW 301 >gi|156743028|ref|YP_001433157.1| signal peptide peptidase SppA, 36K type [Roseiflexus castenholzii DSM 13941] gi|156234356|gb|ABU59139.1| signal peptide peptidase SppA, 36K type [Roseiflexus castenholzii DSM 13941] Length = 348 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 69/273 (25%), Positives = 123/273 (45%), Gaps = 23/273 (8%) Query: 34 NSPHVARIAIRGQIEDS------------QELIERIERISRDDSATALIVSLSSPGGSAY 81 + + I + G I ++L+ +I + D A+++ + SPGGS Sbjct: 75 GNDRIVVITVSGTIGADAGDGLFTTGLSHEQLLSQIRTAANDSRVKAVVLRVDSPGGSVV 134 Query: 82 AGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 A ++ ++K++ + KP++ + +AAS GY IS A I A +L GS+GV+ Sbjct: 135 ASNELYVELKKLREKGKPLVISMGSIAASGGYYISMAGERIYANPDTLTGSLGVIVSLLN 194 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 ++LG+ KS K SP P+ + +VD +Y F+ ++ E R + Sbjct: 195 YDEAFERLGLREYVYKSGDFKDIGSPLRPPQPEEEAIWNALVDEAYQGFIDVIVEGRGME 254 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 + + L+DGRI+TG +AK +GLID +G E+ + L ++ Sbjct: 255 RTEVIRLADGRIYTGRQAKALGLIDELGNLEDAIEGAKELAGLTDALIVRY---RSFNTL 311 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 +L ++ L+ + PL GL A+ P Sbjct: 312 RELLQANLEQNLQPSDPL-------GLRAIAQP 337 >gi|158335227|ref|YP_001516399.1| signal peptide peptidase SppA [Acaryochloris marina MBIC11017] gi|158305468|gb|ABW27085.1| signal peptide peptidase SppA, 36K type [Acaryochloris marina MBIC11017] Length = 315 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 89/306 (29%), Positives = 149/306 (48%), Gaps = 25/306 (8%) Query: 10 TRYVMLSLVTLTVVYF-------SWSSHVEDNSPHVARIAIRGQIED------------- 49 R + L+LVTL ++ S + + S +VA+I + G I D Sbjct: 4 NRVLALALVTLCLIAALGNWLGGSVNKSKDQGSANVAQINVYGVISDEASGGPFSSGEGA 63 Query: 50 -SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV--ITEVHEM 106 + +LI I++ DD A+++ ++SPGG+A A +A++ + + + + + + ++ Sbjct: 64 NANKLISNIKKAREDDGIKAILLRINSPGGTAAASQAVYEELMRTRKDTDIKIVASLGDV 123 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 AAS GY I+ A++ IVA +S+ GSIGV+ Q V LDK+GV + S P+K SP Sbjct: 124 AASGGYYIASAADHIVANPSSITGSIGVIVQTQNVTSLLDKVGVQTNTFTSGPLKDILSP 183 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 F E P+ +++Q +VD SY F+ + R +P +K L+DGRI+TG +AK L+D Sbjct: 184 FRETKPEERKILQSIVDDSYQQFLDAIVAGRGMPLEKLKPLADGRIYTGTQAKDNKLVDS 243 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 +G + L K+KD+ K F D +S + + Sbjct: 244 LGNYYDALDKTAELANISGDPKVKDFG--KGSLFGDFGPFLSTSNQSFPQLTTEWLSSKS 301 Query: 287 LWAVWN 292 W W+ Sbjct: 302 QWPRWH 307 >gi|167919892|ref|ZP_02506983.1| peptidase, U7 family protein [Burkholderia pseudomallei BCC215] Length = 580 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 63/273 (23%), Positives = 121/273 (44%), Gaps = 17/273 (6%) Query: 7 KIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 +I R+ L+++ F S + H A + I G+I +++++ ++ Sbjct: 20 RIFFRFAFLAVLGALAFAFLSVSGDGGKLASGRHTAVVTIDGEIAASTNANAEDINTALD 79 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115 D +++ ++SPGGS ++ I++++ + KP+ V +M AS GY I+ Sbjct: 80 SAFEDSGTVGVVLKINSPGGSPVQAGIVYDEIRRLRKKYPAKPLYVVVSDMCASGGYYIA 139 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL + KLGV + S K PFS PK Sbjct: 140 AAADKIYVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFFDPFSPETPKMD 199 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q+++D + F++ V + R ++ + G WTGA++ ++GL D G + V + Sbjct: 200 AHAQEMLDEIHAQFIKAVKDGRGARLHESPDIFSGLFWTGAKSIELGLADDYGTTDTVAR 259 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 + + D+ ++ + Sbjct: 260 DVLK------APDLVDYTVKESLTDRVARRFGA 286 >gi|46907816|ref|YP_014205.1| U7 family peptidase [Listeria monocytogenes serotype 4b str. F2365] gi|46881085|gb|AAT04382.1| peptidase, U7 family [Listeria monocytogenes serotype 4b str. F2365] Length = 337 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 134/280 (47%), Gaps = 19/280 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76 E + +A +++ G I+D+ + ++++E++ DD+ +++ ++SP Sbjct: 56 EEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLEQVRNDDNIQGVLLYVNSP 115 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG I I +++ + P + MAAS GY IS ++ I A++ +L GS+GV Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + Q + KLGVS ++KS K S + ++MQ ++D SY+ FV++V+ Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + R + ++ ++DGRI+ G +AK+ GLID G QE+ ++L I+ P Sbjct: 236 QGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALEALKKEQGLADATVIQYDTP 295 Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291 + IS + + I L K + ++ Sbjct: 296 ENFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYLY 335 >gi|319792205|ref|YP_004153845.1| peptidase s49 [Variovorax paradoxus EPS] gi|315594668|gb|ADU35734.1| peptidase S49 [Variovorax paradoxus EPS] Length = 343 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 60/282 (21%), Positives = 117/282 (41%), Gaps = 8/282 (2%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIERIS 61 ++ ++ + + + H A + I+G+I ++ ++ ++ Sbjct: 62 FVRLAWLAFFIFLAWFALSRSTPSTAKTTAHTAVVEIKGEIAAGGDASAEFVVAAMKTAF 121 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASN 119 D+ A +++ ++SPGGS I I+++K + KPV V E ASA Y I+ ++ Sbjct: 122 EDEGAKGVVLLINSPGGSPVQAGIINDEIKRLKAKHKKPVYAVVEETCASAAYYIAAGAD 181 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 I + S+VGSIGVL +DK+GV + + + K PFS ++ Q Sbjct: 182 KIFVDKASIVGSIGVLMDGFGFTGVMDKVGVERRLLTAGENKGFLDPFSPMSDAQRAHAQ 241 Query: 180 DVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 +++ + F+ +V R T L G W+G +A + GL D +G + V + + Sbjct: 242 TMLNQIHAQFINVVKTGRGDRLKLDTPGLFSGLFWSGEQAVEYGLADQLGNVDFVAREVI 301 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 + + F + L+ P ++ Sbjct: 302 KAEEVIDYTRRDNVAEKLAKKFGAAMGEASVRSLQVATPALR 343 >gi|256820055|ref|YP_003141334.1| signal peptide peptidase SppA, 67K type [Capnocytophaga ochracea DSM 7271] gi|256581638|gb|ACU92773.1| signal peptide peptidase SppA, 67K type [Capnocytophaga ochracea DSM 7271] Length = 590 Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 107/244 (43%), Gaps = 9/244 (3%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLS 74 + + + +A I G+I ++ +I + + S + A+++ ++ Sbjct: 296 AVVGKATGKHSKNKIAVIYADGEIMQGEGRAEIVGNETIIRALRKASDNKDIKAIVLRIN 355 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGG A A E + R I+ K +K V + AAS GY I+C +N I A ++ GSIGV Sbjct: 356 SPGGDALASELMHREIEVTKKKKKVYVSMGNYAASGGYYIACNANRIFAEAGTITGSIGV 415 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 P V G++ ++V + P S F + + + M + ++ Y F+ V+ Sbjct: 416 FGVIPNVNALATNWGINAETVSTHPNAQFYSVFQKPTEQFKKEMTESIEQVYTVFLDRVA 475 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + R + ++ GR+W+G EA GL+D +G + + R + Sbjct: 476 KGRGKTVAQIDSIAQGRVWSGKEALANGLVDEIGSLNDAIAYAAKDNGLKEYRTVSYPTF 535 Query: 255 PKNY 258 ++ Sbjct: 536 EMDF 539 Score = 93.9 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 104/274 (37%), Gaps = 25/274 (9%) Query: 1 MEFVLKKIKTRYVMLSLVTLTV---VYFSWSSHVEDNSPHVARIAIRGQIEDSQE----- 52 + F + + L +++ + V + V V ++ + D E Sbjct: 12 LGFFISMGICFILFLIFISVMISSVVGGAKGEEVSVKDNSVLELSFEEPLVDYGERITFK 71 Query: 53 --------------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 ++ IE D + + + G + + +A++ K Sbjct: 72 DFDYTSESYNGLNATLKAIENAKTDKRIKGIYLKSTGNIGGLAFAQELRKALEDFKTSGK 131 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 + + + Y + ++ + ++ V G+ + + K +K GV ++ ++ Sbjct: 132 FVLAYSDEISQLDYYLQTVADKVYISQLGSVALRGLSSEVLFFKGLQEKSGVQMEVIRHG 191 Query: 159 PMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTG 215 K+ PF + ++ + + +++ + ++ V +++SRNIP +K ++ T Sbjct: 192 KYKSAVEPFLDNKMSDNNRKQLTELLSAMWNVIVTDIAKSRNIPVEKLNEIATNVGGRTA 251 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 AK GLID + ++E Q + +SI K+ Sbjct: 252 QLAKNNGLIDGILFRDEFEQIICDKTGSKSIDKV 285 >gi|152980027|ref|YP_001353040.1| U7 family peptidase [Janthinobacterium sp. Marseille] gi|151280104|gb|ABR88514.1| peptidase U7 family [Janthinobacterium sp. Marseille] Length = 334 Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 72/286 (25%), Positives = 126/286 (44%), Gaps = 16/286 (5%) Query: 8 IKTRYVMLSLVTLTVVYFSWSS--HVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60 I ++V ++L+ + S +E+ PH A I I G I D+ +I + + Sbjct: 51 IFFKFVTVALIAFALWMSFGPSVGDMENVGPHTALIKIDGTIEAKGAGDADSVISALTKA 110 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCA 117 D + LI+ ++SPGGS I + +++ + KP+ V+EM AS GY I+ A Sbjct: 111 YADPGSVGLILQINSPGGSPVQAGIINDEMTRLRKKYPQKPLYVVVNEMCASGGYYIAVA 170 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 ++ I + SLVGSIGVL ++KLGV + + + K PFS Sbjct: 171 ADRIYVNKASLVGSIGVLMDGFGFTGTMEKLGVERRMLTAGNNKGFMDPFSPQTETQKHY 230 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 QD+++ + F+ +V + R +T G +WTGA++ ++GL D G E V + Sbjct: 231 AQDMLNEIHQQFIDVVRKGRGKRLKETPETFSGLVWTGAKSIELGLADGFGTVESVARD- 289 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 + I D+ + L+ ++ + + Sbjct: 290 -----EFKSTNIVDYTQREGLSDRVLRKFGAAAGASAVKAITESAA 330 >gi|297529049|ref|YP_003670324.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. C56-T3] gi|297252301|gb|ADI25747.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. C56-T3] Length = 335 Score = 145 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 73/293 (24%), Positives = 135/293 (46%), Gaps = 21/293 (7%) Query: 20 LTVVYFSWSSHVEDNSP---HVARIAIRGQIEDS--------------QELIERIERISR 62 L ++ +S V +A + + G I+D+ Q ++ I++ Sbjct: 41 LALMESPFSEEVIAEGDPLKKIAVLEVNGVIQDAGEAESFLSSSQYNHQTFLQMIKQAKE 100 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNI 120 D A+I+ ++SPGG I+ + K+K + KP+ + MAAS GY I+ A + Sbjct: 101 DQDVKAIILRINSPGGGVAESAEIYDQLMKLKKKTNKPIYVSMGAMAASGGYYIAAAGDK 160 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 I A+ ++ GSIGV+ Q + K GV + ++KS P K +P ++ +++Q Sbjct: 161 IFASPETITGSIGVIMQSVNYEGLAKKYGVELVTIKSGPYKDIMNPARKMTEAEREILQQ 220 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +++ SY FV +V++ R +P D L+DGRI+ G +AK + L+D G ++ +L Sbjct: 221 LINDSYDAFVDVVAKGRKLPEDTVRKLADGRIYDGRQAKALLLVDEFGYLDDAIAALKKE 280 Query: 241 GVDQSIRKIKDWN--PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 + +K N P + + + S I L+ + L ++ Sbjct: 281 HHLTGAQVVKYVNDAPWSSLFEMVSNRMKPDSEAAGLIRLLSRPSSPRLMYLY 333 >gi|332827777|gb|EGK00512.1| signal peptide peptidase SppA, 67K type [Dysgonomonas gadei ATCC BAA-286] Length = 584 Score = 145 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 65/258 (25%), Positives = 132/258 (51%), Gaps = 9/258 (3%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------SQELIERIERISRDDSATA 68 L ++ + + + +A + G I D S+ ++ +E++ +D A Sbjct: 285 LASVKDMTTVPFENKSKSKDIIAILYAEGSITDGSGTDGITSKRFVKELEKLKDNDKVKA 344 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 ++ ++SPGGSAYA E I++A+ +K +KPV+ + + AAS GY ISC ++ I+A +L Sbjct: 345 VVFRVNSPGGSAYASEQIWKAVTDLKEKKPVVVSMGDYAASGGYYISCNASKIIAQPNTL 404 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIG+ +P V+ K+G++ +VK++ + + ++Q+ ++ Y Sbjct: 405 TGSIGIFGMFPNVEGLTKKVGLTFDNVKTNKLADFGDLTRPMRDDEKAILQNYIERGYDL 464 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 F+ S+ R I + ++ GR+WTG +A K+GL+D +GG ++ + L + Sbjct: 465 FLTRCSDGRGIDKNSLDSIAQGRVWTGNQALKIGLVDELGGIDKAIEEAAKLANLED-YS 523 Query: 249 IKDWNPPKNYWFCDLKNL 266 + + ++++ L + Sbjct: 524 LNSFPKKRDFFESFLSDQ 541 Score = 93.1 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 40/308 (12%), Positives = 102/308 (33%), Gaps = 33/308 (10%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------------------EDSQ 51 + + + + S V + + G + Sbjct: 21 ICFLIFFIVLAAMSAKESYTLKDNTVLTLKLEGILSERVEEENPLLAMLNQNSEPQIGLD 80 Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 +++ I++ +D + ++ + S + + + + K I ++ Sbjct: 81 DIVSSIKKAKENDKIKGIYINAGAFSASGASLKEMRDQLVDFKESGKFIVAYSDVYTQGC 140 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--E 169 Y +S ++ ++ + G+ + K LDK+G+ ++ K K+ PF + Sbjct: 141 YYLSSVADKLIMNPEGHLDLHGLSASPMFYKGLLDKIGIEMQIFKVGTFKSAVEPFMLDK 200 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--GAEAKKVGLIDVV 227 ++ + + + + +S SRNI +K V++D + GL+D + Sbjct: 201 MSDANREQVSSYIGDMWSTITSEISASRNISVEKLNVITDSLALFKKSEVCVQDGLVDTL 260 Query: 228 GGQEEVWQSLY------ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 + V + L D + +KD + K+ I ++L + Sbjct: 261 MYETGVREYLKTLLTGVEKAKDVRLASVKDMTTV--PFENKSKSKDIIAILYAEGSITDG 318 Query: 282 TKVQGLWA 289 + G+ + Sbjct: 319 SGTDGITS 326 >gi|108798015|ref|YP_638212.1| signal peptide peptidase SppA, 67K type [Mycobacterium sp. MCS] gi|119867110|ref|YP_937062.1| signal peptide peptidase SppA, 67K type [Mycobacterium sp. KMS] gi|108768434|gb|ABG07156.1| signal peptide peptidase SppA, 67K type [Mycobacterium sp. MCS] gi|119693199|gb|ABL90272.1| signal peptide peptidase SppA, 67K type [Mycobacterium sp. KMS] Length = 593 Score = 145 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 64/283 (22%), Positives = 117/283 (41%), Gaps = 21/283 (7%) Query: 27 WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70 S P +A + + G I + + + D +A++ Sbjct: 291 PSIPGRKAKPTIAVVTLHGPIVSGRGGPGLSPLGNSSAGGDTITAALREAAADKDVSAIV 350 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLV 129 + + SPGGS E I+R + + + + + +AAS GY +S ++ IVA ++ Sbjct: 351 LRVESPGGSVTGSETIWREVLRTREGGTPVVASMGAVAASGGYYVSMGADAIVANPGTIT 410 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ + D+LGV SV+++ S S + ++ D Y F Sbjct: 411 GSIGVVTGKLVARELKDRLGVGSDSVRTNANADAWSANSPFTDEQQAHVEAEADLFYTDF 470 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V V++ R + D+ ++ GR+WTGA+AK GL+D +GG L + + Sbjct: 471 VERVADGRGLSVDEVAEVARGRVWTGADAKDRGLVDELGGLRTAIDRAKVLAGLEPDTDV 530 Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288 + P + L+ + ++ L D + ++ V L Sbjct: 531 RIVGYPASSLLDLLRPKQSSQPAAASLPDALGVLVGRSVVSLI 573 Score = 100 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 84/237 (35%), Gaps = 2/237 (0%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79 + + +A I+ G+ ++++ I R + DD LI + Sbjct: 34 VLELDLMSVPPETSGFDPLAMISAGGRPMVLRQVVAAIHRAADDDRVAGLIARVQISAAP 93 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A + + AI +KP + + Y ++ A + + VG +G Sbjct: 94 AAPVQELREAIAAFGAKKPSVAWAETYPGTLSYYLASAFREVWMQPSGTVGLVGFATSAL 153 Query: 140 YVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 +++ LDK G+ + K+ + +++S + V+ESR Sbjct: 154 FLRDALDKAGIQAQFTARGEYKSAANLFTQDSYTEPHREADSRLIESLNQQVLTAVAESR 213 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + D L+D A GL+D +G ++E + + L + + +P Sbjct: 214 KLNPDDIDALADKAPLLRDAAVGGGLVDRIGFRDEAYARVAELAGAEGVTPQNTDSP 270 >gi|207725234|ref|YP_002255630.1| protease protein [Ralstonia solanacearum MolK2] gi|206590468|emb|CAQ37430.1| protease protein [Ralstonia solanacearum MolK2] Length = 414 Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 70/291 (24%), Positives = 129/291 (44%), Gaps = 15/291 (5%) Query: 7 KIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60 +I R+V L ++ + F S+ + H A +++ G+I ++ + +E Sbjct: 128 RIFFRFVTLGILGGLLYLFASFEGETVGSGRHTAVVSLDGEIAASTNASAENINASLEAA 187 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCA 117 DD+ +I+ ++SPGGS I I++++ + I V EM AS GY ++ A Sbjct: 188 FADDNTAGVILKINSPGGSPVQAGMINDDIRRLRAKHKDIPLYVVVEEMCASGGYYVAAA 247 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 ++ I + S+VGSIGVL +DK+GV + + + K PFS V P+ Q Sbjct: 248 ADKIYVDKASIVGSIGVLMDGFGFTGLMDKVGVERRLLTAGANKGMLDPFSPVPPQQRQF 307 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 Q ++D + F+ +V + R L G WTG++A ++GL D +G + V + Sbjct: 308 AQAMLDEVHQQFIDVVKQGRGSRLKDDPQLFSGLFWTGSKAVELGLADGIGSADFVAR-- 365 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + D+ +N+ + + L +++ L Sbjct: 366 ----NVIKAPDMVDYTVKENFAERVARKFGTAMGAGAIKALAATGQLKLLM 412 >gi|333029937|ref|ZP_08457998.1| signal peptide peptidase SppA, 67K type [Bacteroides coprosuis DSM 18011] gi|332740534|gb|EGJ71016.1| signal peptide peptidase SppA, 67K type [Bacteroides coprosuis DSM 18011] Length = 591 Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 68/254 (26%), Positives = 135/254 (53%), Gaps = 11/254 (4%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDS----------QELIERIERISRDDSATALIVSL 73 F + ++A G I D+ + +++ ++++ +++ A+++ + Sbjct: 296 VFIPKDQTKKKDGNIAIYYAEGDIVDASNKFASAIVGESVVKDLKKLEENENIKAVVLRV 355 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 +SPGGSAYA E I++A+ +K +KPVI + + AAS GY IS A++ I+A T+L GSIG Sbjct: 356 NSPGGSAYASEQIWKAVVDLKAKKPVIVSMGDYAASGGYYISAAADHIIAEPTTLTGSIG 415 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + P + +K+G++ VK++ S F N Q++Q ++ Y F++ Sbjct: 416 IFAMIPSFEKVANKVGLNFDVVKTNKHADFGSIFRNFNADERQLLQFYIEEGYGLFIKRC 475 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 ++ R I ++ +++GR+WTGA+AK++GLID +GG + + + ++ + Sbjct: 476 ADGRGISEEEIRKIAEGRVWTGAKAKEIGLIDELGGLNDALEYAASKAGLT-TYNVRTYP 534 Query: 254 PPKNYWFCDLKNLS 267 +++ L+ S Sbjct: 535 TQPDFFEQLLQMTS 548 Score = 85.8 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 39/274 (14%), Positives = 90/274 (32%), Gaps = 28/274 (10%) Query: 11 RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI----------------------- 47 + L V + + S V V + + G + Sbjct: 22 LFFFLFSVVIGSIISSSDKDVIVKESSVLELKLEGSLSERALENPLADLFDINPLNSSQS 81 Query: 48 -EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 +L+ I++ + + + + S + EAI +A+ K I + Sbjct: 82 SVGLNDLLSSIKKAKNHSNIKGIYIEAKNLSASFASLEAIRKALIDFKESGKFIISYADQ 141 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 Y ++ ++ + + G+ Q + L +GV ++ K K+ P Sbjct: 142 YTQGLYYLASVADEVHLNPKGGLLWAGLAAQPMFYTTLLKNIGVDMQIFKVGTYKSAVEP 201 Query: 167 FSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGAE-AKKVG 222 ++E ++ + + ++ + V VS +RNI +K +D + + E A Sbjct: 202 YTETKMSQANKEQVSVFLNDIWSHIVSGVSTARNISQEKLQEYADKMVLFQPTEFALNNH 261 Query: 223 LIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 L+D + + +V ++ + I Sbjct: 262 LVDKLSYRYDVQNAIKEKLNGEKANYISFKKMKH 295 >gi|311069439|ref|YP_003974362.1| signal peptide peptidase [Bacillus atrophaeus 1942] gi|310869956|gb|ADP33431.1| signal peptide peptidase [Bacillus atrophaeus 1942] Length = 334 Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 62/318 (19%), Positives = 148/318 (46%), Gaps = 41/318 (12%) Query: 6 KKIKTRYVMLSLVTLTVVY---FSWSSHVEDNSP--------------------HVARIA 42 K+ + L + ++++ ++ + N+ +A + Sbjct: 4 KRWIALVIALGIFGVSLIASLTIAFFENFSGNTDITSLNDESQEVTLEDGNLSSKIAVLE 63 Query: 43 IRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 + G I+D+ + ++ +E+ D + +++ ++SPGG Y I + Sbjct: 64 VSGTIQDNGDSSSLLGSDGYNHRTFLKNLEQAKEDKTVKGIVLKVNSPGGGVYESAEIHK 123 Query: 89 AIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 ++++K +KP+ + MAAS GY IS ++ I A+ ++ GS+GV+ + D Sbjct: 124 KLEEIKKETKKPIYVSMGSMAASGGYYISADADKIYASPETITGSLGVIMESVNYSKLAD 183 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 +LG+ +++KS K S ++ + ++MQ +VD+SY FV ++S+ RN+ + Sbjct: 184 ELGIKFETIKSGAHKDIMSATRDMTDEEKKIMQSMVDNSYEGFVDVISKGRNMSEAEVKK 243 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 ++DGR++ G +AKK+ L+D +G ++ ++ + + + +++ L ++ Sbjct: 244 IADGRVYDGKQAKKLNLVDELGFYDDTIAAMKKDHKNLKDASVVTYE--ESFGLGSLFSM 301 Query: 267 SISSLLEDTIPLMKQTKV 284 + + + I + ++ Sbjct: 302 GANKMFKSEIDFLNMKEL 319 >gi|218458242|ref|ZP_03498333.1| signal peptide peptidase SppA, 36K type [Rhizobium etli Kim 5] Length = 269 Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 106/255 (41%), Positives = 166/255 (65%), Gaps = 1/255 (0%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVS 72 V L + Y PH+A + I G I D EL+ER++++ D A ++S Sbjct: 5 VALVVALGLAFYGFAFGGAGTERPHIAHVTISGLIVDDDELLERLKKVETSDQVKAAVIS 64 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 +SSPGG+ Y GE IF+AI+ + +KPV+++V +AASAGY+++ A + I+A ++S+ GSI Sbjct: 65 ISSPGGTTYGGEKIFKAIRAISAKKPVVSDVRTLAASAGYMVATAGDTIIAGDSSITGSI 124 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GV+FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A M++++V SY+WFV L Sbjct: 125 GVIFQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKAMIRNMVVDSYNWFVDL 184 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 V++ R +P ++ L L+DG I+TG +A + LID +GG+ E+ L + GVD + + DW Sbjct: 185 VADRRKLPREEALKLADGTIFTGRQALQAKLIDTIGGEPEIRAYLKSRGVDADLPMV-DW 243 Query: 253 NPPKNYWFCDLKNLS 267 + N F +S Sbjct: 244 DKKSNTPFLLAGAVS 258 >gi|237722788|ref|ZP_04553269.1| protease IV [Bacteroides sp. 2_2_4] gi|293371818|ref|ZP_06618228.1| signal peptide peptidase SppA, 67K type [Bacteroides ovatus SD CMC 3f] gi|229447310|gb|EEO53101.1| protease IV [Bacteroides sp. 2_2_4] gi|292633270|gb|EFF51841.1| signal peptide peptidase SppA, 67K type [Bacteroides ovatus SD CMC 3f] Length = 592 Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 126/246 (51%), Gaps = 13/246 (5%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 + + VA G+I D ++I + ++ +D A+++ ++SPG Sbjct: 301 PKDKSGNIVAVYYASGEITDYPSSATSEDGIVGSKVIRDLRKLKDNDDVKAVVLRVNSPG 360 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 GSA+A E I+ A++++K +KPVI + + AAS GY ISC ++ IVA T+L GSIG+ Sbjct: 361 GSAFASEQIWHAVKELKTKKPVIVSMGDYAASGGYYISCVADTIVAEPTTLTGSIGIFGM 420 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P VK DK+G+S VK++ + N ++Q ++ Y FV +E R Sbjct: 421 IPNVKGLTDKIGLSYDVVKTNKYADFGNIMRPFNEDEKSLLQMMITEGYDTFVTRCAEGR 480 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 ++ + +++GR+WTG AK++GL+D +GG ++ A + + + ++ Sbjct: 481 HMTKEAIEKIAEGRVWTGETAKELGLVDELGGIDKALDIAVAKAGIEG-YTVVSYPEKQD 539 Query: 258 YWFCDL 263 + L Sbjct: 540 FLSSLL 545 Score = 107 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 98/264 (37%), Gaps = 26/264 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49 ++S+VTL + + + V + + G + Sbjct: 22 LFIISMVTLFGIMSASDTETIVKKNSVMMLDLNGTLVERTQEDPLDILSQLLGDGSNTYG 81 Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 +++ I++ +++ + + +S G S + + I A+ K + + Sbjct: 82 LDDILSSIQKAKENENIKGIYLQANSLGTSYASLQEIRNALLDFKESGKFVIAYADSYTQ 141 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y +S A++ ++ ++ G+ + K L K+GV ++ K K+ PF Sbjct: 142 GLYYLSSAADKVLLNPKGMIEWRGIASAPLFYKDLLQKIGVEMQVFKVGTYKSAVEPFIA 201 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225 +E++P + + + S + VS SRNI D V +D + E+ K GL D Sbjct: 202 TEMSPANREQVTTFITSIWGQVTEGVSTSRNISVDSLNVYADRMLMFYPAEESVKCGLAD 261 Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249 + + +V L L + Sbjct: 262 TLIYRNDVRNYLKKLVEINEDDNL 285 >gi|313204613|ref|YP_004043270.1| signal peptide peptidase a [Paludibacter propionicigenes WB4] gi|312443929|gb|ADQ80285.1| signal peptide peptidase A [Paludibacter propionicigenes WB4] Length = 587 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 75/275 (27%), Positives = 145/275 (52%), Gaps = 13/275 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS 75 + + + VA I G+I D ++++++ I +++D + A+++ +SS Sbjct: 295 AMSKLPDNSKYDKNKVAVIYAIGEITDTEGDEIVARDMVKTINDVAKDSAVKAVVLRVSS 354 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 PGGSAYA E I+ A+ +K +KP+I + + AAS GY ISC ++ I+A ++ GSIG+ Sbjct: 355 PGGSAYASEQIWHALSMLKAKKPLIVSMGDYAASGGYYISCLADKIIAQPNTITGSIGIF 414 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 P +K +KLG++ VK++ M S P+ +MQ+ V+ Y FV+ ++ Sbjct: 415 GAIPNIKGLNEKLGLTYDGVKTNKMSDGISINRSFTPEERDLMQNYVNRGYELFVKRCAQ 474 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 R + ++ +++GR+WTG +A K+GL+D +GG + + S +K++ Sbjct: 475 GRKMKVEQIKAIAEGRVWTGEDAIKIGLVDKIGGLNDAIKLAVDKAKLSS-YNLKEYPEK 533 Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 +++ L SL ED + + ++ +++ Sbjct: 534 EDFTAKLL-----KSLTEDVEARVMEAQLGEQYSI 563 Score = 94.7 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 106/280 (37%), Gaps = 34/280 (12%) Query: 1 MEFVLKKIKTRYV------MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED----- 49 ++F L I ++ ++ + L S S + + + G + D Sbjct: 5 LKFTLASIVGIFITSLLGVLIFFIVLGAAASSGEKTTVLKSNSIYELDLEGSLVDRSEDN 64 Query: 50 -------------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 E+++ IE+ DD+ + + S G + + I A+ Sbjct: 65 PFSNVLGKALGSSSENSLGLDEVLKNIEKAKNDDNIVGIYLKGGSLSGGIASVKEIRNAL 124 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 K I + + Y + +N I+ ++ G+ + ++K LDKLG+ Sbjct: 125 IDFKKSGKFIVAYADNYSQKMYYLVSVANKILINPQGMLELKGLSTETMFLKNTLDKLGI 184 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 ++ VK K+ P+ ++++ + ++S ++ ++ +S SR IP +K + Sbjct: 185 EMQIVKVGTFKSAVEPYILTKMSDANRLQVNVFLNSIWNTILKEISASRKIPTEKLNSYA 244 Query: 209 DGRIWT--GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 D + ++K+ L+D + ++V L D Sbjct: 245 DEMMMYQPTEKSKQYNLVDSLVYADQVDSILQKYVKDFKK 284 >gi|330878257|gb|EGH12406.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 332 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 121/291 (41%), Gaps = 18/291 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61 K V V + + ++ S H A I ++G I D ++ + + Sbjct: 49 FFKLLTVAFLFVAIVLPMLNFEGGASRRSSHTALIDVQGVIADKESASAENITTALRDAF 108 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118 D+ +I+ ++SPGGS ++ I++++ KP I + AS Y I+ A+ Sbjct: 109 GDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRAEKPNIKVYAVITDLGASGAYYIASAA 168 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I A + SLVGSIGV ++KLGV ++ S KA PF Q Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMEKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q V+D+++ F+ V + R + G IWTG + +GL+D +G V + Sbjct: 229 QSVLDTTHRQFIASVKQGRGDRLKDKDHPEMFSGLIWTGEQGVALGLVDGLGSASYVARE 288 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + I ++ ++ + K L S + + I ++ L Sbjct: 289 VIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERIAMLVGFGGPSL 331 >gi|260175077|ref|ZP_05761489.1| protease IV [Bacteroides sp. D2] gi|299147649|ref|ZP_07040713.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 3_1_23] gi|315923305|ref|ZP_07919545.1| conserved hypothetical protein [Bacteroides sp. D2] gi|298514436|gb|EFI38321.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 3_1_23] gi|313697180|gb|EFS34015.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 592 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 126/246 (51%), Gaps = 13/246 (5%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 + + VA G+I D ++I + ++ +D A+++ ++SPG Sbjct: 301 PKDKSGNIVAVYYASGEITDYPSSATSEDGIVGSKVIRDLRKLKDNDDVKAVVLRVNSPG 360 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 GSA+A E I+ A++++K +KPVI + + AAS GY ISC ++ IVA T+L GSIG+ Sbjct: 361 GSAFASEQIWHAVKELKTKKPVIVSMGDYAASGGYYISCVADTIVAEPTTLTGSIGIFGM 420 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P VK DK+G+S VK++ + N ++Q ++ Y FV +E R Sbjct: 421 IPNVKGLTDKIGLSYDVVKTNKFADFGNIMRPFNEDEKSLLQMMITEGYDTFVTRCAEGR 480 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 ++ + +++GR+WTG AK++GL+D +GG ++ A + + + ++ Sbjct: 481 HMTKEAIEKIAEGRVWTGETAKELGLVDELGGIDKALDIAVAKAGIEG-YTVVSYPEKQD 539 Query: 258 YWFCDL 263 + L Sbjct: 540 FLSSLL 545 Score = 107 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 98/264 (37%), Gaps = 26/264 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49 ++S+VTL + + + V + + G + Sbjct: 22 LFIISMVTLFGIMSASDTETIVKKNSVMMLDLNGTLVERTQEDPLGILSQLLGDGSNTYG 81 Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 +++ I++ +++ + + +S G S + + I A+ K + + Sbjct: 82 LDDILSSIQKAKENENIKGIYLQANSLGTSYASLQEIRNALLDFKESGKFVIAYADSYTQ 141 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y +S A++ ++ ++ G+ + K L K+GV ++ K K+ PF Sbjct: 142 GLYYLSSAADKVLLNPKGMIEWRGIASAPLFYKDLLQKIGVEMQVFKVGTYKSAVEPFIA 201 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225 +E++P + + + S + VS SRNI D V +D + E+ K GL D Sbjct: 202 TEMSPANREQVTTFITSIWGQVTEGVSTSRNISVDSLNVYADRMLMFYPAEESVKCGLAD 261 Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249 + + +V L L + Sbjct: 262 TLIYRNDVRNYLKKLVEINEDDNL 285 >gi|182415685|ref|YP_001820751.1| signal peptide peptidase SppA, 67K type [Opitutus terrae PB90-1] gi|177842899|gb|ACB77151.1| signal peptide peptidase SppA, 67K type [Opitutus terrae PB90-1] Length = 656 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 113/241 (46%), Gaps = 10/241 (4%) Query: 32 EDNSPHVARIAIRGQIEDSQ----------ELIERIERISRDDSATALIVSLSSPGGSAY 81 S VA + G I D + + R+ +DDS A+++ ++SPGGSA Sbjct: 364 SSRSGRVAVVYAEGDIVDGEGNEQGEIGGTRFSRELRRLRQDDSVKAIVLRVNSPGGSAS 423 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 A E I R I+ + KPVI + AAS GY IS + I A T++ GSIGV V Sbjct: 424 ASETIQREIRLAREVKPVIVSMGSYAASGGYWISAYGDRIFAEPTTVTGSIGVFGIMFDV 483 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + + G++ SVK+ + P+ + + Q VD Y FV V E R++ Sbjct: 484 QKLFNGWGLTFDSVKTGRFADTLTIARPKTPEEMALFQRSVDWIYDQFVSKVVEGRHLAR 543 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 + ++ GR+W+G EAKK+GL+D +GG + + S ++ ++ K + Sbjct: 544 EHVEEIAQGRVWSGVEAKKLGLVDELGGLDAAIRYAAGRAGLGSDYRLVEYPRKKEFAEA 603 Query: 262 D 262 Sbjct: 604 L 604 Score = 80.8 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 34/254 (13%), Positives = 93/254 (36%), Gaps = 11/254 (4%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGE--AIFRAIQKVKNRKPVITEVHEMAA 108 + + + ++DD + + P G G + A+ + K + A Sbjct: 80 RTVTRTLRAAAKDDRIAGIFIFGDVPAGGPGYGALKEVRAALNQFKASGKPVKAYLTYAT 139 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167 + Y ++ ++ + + G+ Q ++ +K G+ ++ + K+ PF Sbjct: 140 TKNYYLASVADELTIDPYGTIIMPGLASQPMFLAGAFEKYGIGVQVTRVGKYKSAVEPFT 199 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GAEAKKVGLID 225 ++++P+ +Q ++D + +R ++ SR + + D AK L+D Sbjct: 200 RTDMSPENRAQIQKLLDDVWAGLLRDMAGSRKLKSNAIQATVDAEGLIRADAAKAANLVD 259 Query: 226 VVGGQEEVWQSLYALGVDQSIRK------IKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 + ++E+ L + + ++ + D++ L+ + + +E+ Sbjct: 260 RIAYRDEIIGELKRITGRDNSKESFKQIGLVDYSKVAKDQPPPLRTMKPADRVEELAKTE 319 Query: 280 KQTKVQGLWAVWNP 293 + A P Sbjct: 320 GDASAKPAVATKTP 333 >gi|213962885|ref|ZP_03391145.1| signal peptide peptidase SppA, 67K type [Capnocytophaga sputigena Capno] gi|213954542|gb|EEB65864.1| signal peptide peptidase SppA, 67K type [Capnocytophaga sputigena Capno] Length = 590 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 60/266 (22%), Positives = 110/266 (41%), Gaps = 11/266 (4%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLS 74 + +A I G+I ++ +I + + + A+++ ++ Sbjct: 296 AVVGKATEHKTKDKIAVIYADGEIMQGEGRAEVVGNETIIRALRKAADKKEVKAIVLRIN 355 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGG A A E + R I+ K +K V + AAS GY I+C +N I A E ++ GSIGV Sbjct: 356 SPGGDALASELMHREIEITKKKKKVYVSMGNYAASGGYYIACNANRIFAEEGTITGSIGV 415 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 P V G++ ++V + P S + + + + M + ++ Y F+ V+ Sbjct: 416 FGVIPNVNALATNWGITAETVSTHPNAQWYSLYQKPTEQFRKEMTESIEQVYTVFLDRVA 475 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD--W 252 + R + ++ GR+W+G EA GL+D +G + + R I + Sbjct: 476 QGRGKTVAQIDSIAQGRVWSGKEALANGLVDELGSLNDAIAYAAKDNGLKEYRTISYPVF 535 Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPL 278 F + L D + + Sbjct: 536 EMDFKTMFRRFGAQLRGNNLRDEMGV 561 Score = 90.4 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 98/274 (35%), Gaps = 25/274 (9%) Query: 1 MEFVLKKIKTRYVMLSLVTLTV---VYFSWSSHVEDNSPHVARIAIRGQIED-------- 49 + F + + L +++ + V S + V +A + D Sbjct: 12 LGFFISMGICLLLFLVFISVMIGSVVGSSSGEEITVKDNSVLELAFNEPLTDYGERVSFK 71 Query: 50 -----------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 ++ I+ D + + + G + + +A+ K Sbjct: 72 DFDYTSQSYNGLNTTLKAIQNAKIDKRIKGIYLKSTGNIGGLAFAQELRKALIDFKTSGK 131 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 + ++ + Y + ++ I ++ V G+ + + K +K GV ++ ++ Sbjct: 132 FVLAYNDEISQLDYYLQSVADKIYISQLGSVALRGLSSEVLFFKGLQEKTGVQMEVIRHG 191 Query: 159 PMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTG 215 K+ PF + ++ + ++++ + +S+SRNI +K ++ Sbjct: 192 KYKSAVEPFLDNKMSDNNRLQISQLLNAMWGVIAADISQSRNISVEKLNEIATNVNGRNA 251 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 AK GL+D + ++E + + +SI K+ Sbjct: 252 QLAKNNGLVDDILYRDEFEKIICDKTGSKSIDKV 285 >gi|254410663|ref|ZP_05024442.1| signal peptide peptidase SppA, 67K type [Microcoleus chthonoplastes PCC 7420] gi|196182869|gb|EDX77854.1| signal peptide peptidase SppA, 67K type [Microcoleus chthonoplastes PCC 7420] Length = 593 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 66/247 (26%), Positives = 123/247 (49%), Gaps = 9/247 (3%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGS 79 H + +A + G+I D + ++ ++ DDS A+++ ++SPGGS Sbjct: 299 EHQRASKNKIAVLYASGEIVDGEGSVQEVGGESFAAQMRKLRLDDSVKAVVLRVNSPGGS 358 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A A E I R ++ ++ KPVI + ++AAS GY IS N I A ++ GSIGV Sbjct: 359 ATASEIIQREVKLTRDSKPVIISMGDIAASGGYWISTYGNRIFAEPNTVTGSIGVFGLLM 418 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 V+ ++ G++ VK+ + + + ++Q +VD Y F+ V+ESR + Sbjct: 419 NVQQIANENGITWDVVKTGRFADTQTVSRPKTTQELALIQKIVDQVYSKFLDKVAESRKL 478 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 P DK ++ GR+W+G +AK++GL+D +GG ++ + K++++ + Sbjct: 479 PKDKVAQIAQGRVWSGIDAKQLGLVDEIGGLDDAIEYAVKEANLGEDWKLEEYPRFQTLE 538 Query: 260 FCDLKNL 266 ++ Sbjct: 539 ERLIEEF 545 Score = 83.5 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 49/272 (18%), Positives = 97/272 (35%), Gaps = 31/272 (11%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------- 51 + + LV+L + S + + V + + D+ Sbjct: 10 LFFGIGTVGLVSLIITAASRDTGPQVKDKSVLVFDLSLTVRDTDPTSSTSRAIEEALSGE 69 Query: 52 --------ELIERIERISRDDSATALIVSLS----SPGGSAYAGEAIFRAIQKVKNRKPV 99 ++I+ + + D AL + S S G + + A+++ K Sbjct: 70 ETDTITLRKVIDTLNTAAEDSRIVALYLDGSQTSTSSGTGFATLKEVREALERFKESGKK 129 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 I + Y +S ++ IV + G Q + L+K G+ I+ ++ Sbjct: 130 IIAYDVDSGEGEYYLSSIADTIVLNPMGSLEMNGFSSQPMFFTGALEKFGIGIQVIRVGK 189 Query: 160 MKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216 K+ PF E++ + Q MQ ++ + F V +SR + + ++D I + Sbjct: 190 YKSAVEPFVLKELSQENRQQMQALLGDLWTEFRTTVGKSRQVTPQELQAIADTQGIVLAS 249 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 +A L+D VG +EV L L + K Sbjct: 250 DAIGRRLVDKVGYYDEVIAQLQELTGESETEK 281 >gi|332886098|gb|EGK06342.1| signal peptide peptidase SppA, 67K type [Dysgonomonas mossii DSM 22836] Length = 584 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 70/267 (26%), Positives = 130/267 (48%), Gaps = 9/267 (3%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------SQELIERIERISRDDSATA 68 + ++ + ++ +A + G I + + ++ IE++ +D A Sbjct: 285 MASIKDMTSVSFVKESNSKDVIAILYAEGSINNGSGKDGITDKRYVKEIEKLKDNDKVKA 344 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 ++ ++SPGGSAYA E I++AI +K +KPV+ + + AAS GY I+C ++ I+A +L Sbjct: 345 VVFRVNSPGGSAYASEQIWKAITDLKAKKPVVVSMGDYAASGGYYIACNASKIIAQPNTL 404 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIG+ +P + K+G+S +VK++ + P+ ++Q ++ Y Sbjct: 405 TGSIGIFGMFPNFEGLTKKVGLSFDNVKTNKFADFGDATRPMRPEEKVILQQYIEHGYDL 464 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 F+ SE RNIP D ++ GR+WTG +A K+GL+D +G + Q L Sbjct: 465 FLTRCSEGRNIPKDSLDHIAQGRVWTGNQALKIGLVDALGNIDTAIQEAAKLAKL-DDYS 523 Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDT 275 ++D+ ++ L N + Sbjct: 524 LQDYPKKVDFLESLLSNQKEEFATKAM 550 Score = 95.8 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 37/254 (14%), Positives = 92/254 (36%), Gaps = 24/254 (9%) Query: 21 TVVYFSWSSHVEDNSPHVARIAIRGQI--------------------EDSQELIERIERI 60 + F S V + + G + +++ I++ Sbjct: 31 AAMSFGSSDKYNLKDNTVLTLKLEGTLSERVEPNSFLDLIGQNTDLEIGLDDILSSIKKA 90 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 +D+ + ++ + S + + I + K I ++ + Y +S ++ Sbjct: 91 KENDNIKGIYINAGAFAASNASLKEIRDQLADFKESGKFIIAYADVYSQGCYYLSSVADK 150 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVNPKAVQMM 178 ++ + G+ + K LDK+G+ ++ K K+ PF +++ + + Sbjct: 151 VIMNPQGNLDLHGLSSSPTFYKGLLDKIGIEMQIFKVGTFKSAVEPFMLDKMSDANREQV 210 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSD--GRIWTGAEAKKVGLIDVVGGQEEVWQS 236 ++ + +S+SR I DK L+D + GL+D + + EV + Sbjct: 211 TAYINDIWSTITSEISDSRKISVDKINQLTDSLQTFKLANASVTDGLVDTLMYETEVKEY 270 Query: 237 LYALGVDQSIRKIK 250 L L + ++ ++ Sbjct: 271 LKDLLKVEKVKDVR 284 >gi|160890040|ref|ZP_02071043.1| hypothetical protein BACUNI_02479 [Bacteroides uniformis ATCC 8492] gi|317481508|ref|ZP_07940572.1| signal peptide peptidase SppA [Bacteroides sp. 4_1_36] gi|156860428|gb|EDO53859.1| hypothetical protein BACUNI_02479 [Bacteroides uniformis ATCC 8492] gi|316902325|gb|EFV24215.1| signal peptide peptidase SppA [Bacteroides sp. 4_1_36] Length = 589 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 71/270 (26%), Positives = 131/270 (48%), Gaps = 13/270 (4%) Query: 30 HVEDNSPHVARIAIRGQI------------EDSQELIERIERISRDDSATALIVSLSSPG 77 + + +A G+I DS+++I+ + ++ D+ A+++ ++SPG Sbjct: 298 PKDKSGNVIAVYYAYGEIDGGSSSASSEEGIDSKKVIKDLRKLKDDEDVKAVVLRVNSPG 357 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 GSAY E I+ A+ ++K KPVI + + AAS GY ISC ++ IVA T+L GSIG+ Sbjct: 358 GSAYGSEQIWYAVSELKKEKPVIVSMGDYAASGGYYISCNADTIVAEPTTLTGSIGIFGM 417 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 +P K DK+GV+ VK++ +N +MQ V++ Y F+ S+ R Sbjct: 418 FPNAKGLTDKIGVNFDVVKTNKYADFGMLTRPMNDGEKGLMQMYVNNGYDLFLTRCSDGR 477 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 I + ++ GR+WTG++AK++GL+D +GG ++ A + + ++ Sbjct: 478 GISKEDLDKIAQGRVWTGSKAKELGLVDELGGLDKALDIAIAKAGV-DAYTVMSYPKKES 536 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 ++ + + + + Q Sbjct: 537 FFESLMNTNPGNYIKARMLKGTMGEIYQQF 566 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 106/281 (37%), Gaps = 33/281 (11%) Query: 1 MEFVLKK-------IKTRYVMLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQIE-- 48 M+ LK I V+L +++ VV+ SS + + + + G + Sbjct: 1 MKDFLKFTFATITGIIVSVVVLVFISILVVFSMVSSSESETQVRKNSIMMLDLNGALAER 60 Query: 49 -----------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 +++ I++ +D + + +S G + E I A++ Sbjct: 61 SQDNPFDALMGDNYKTYGLDDILSSIKKAKENDDIKGIYIEATSLGAGFASREEIRNALK 120 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 K I + + Y +S ++ ++ +V G+ + K L K+GV Sbjct: 121 DFKESGKFIVAYGDSYSQGLYYLSSIADKVLLNPQGMVEWRGLAATPMFFKDLLAKIGVE 180 Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 ++ K K+ PF +E++P + + + S + V+ESR I D ++D Sbjct: 181 MQIFKVGTYKSAVEPFISTEMSPANREQIDAYLTSIWGQVTNDVAESRKISVDSLNAIAD 240 Query: 210 G--RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + E+ + GL+D + + +V L A+ + Sbjct: 241 RMLMFYPAEESVQCGLVDTLIYKNDVRNYLKAMVGIDKDDR 281 >gi|160884948|ref|ZP_02065951.1| hypothetical protein BACOVA_02940 [Bacteroides ovatus ATCC 8483] gi|156109298|gb|EDO11043.1| hypothetical protein BACOVA_02940 [Bacteroides ovatus ATCC 8483] Length = 592 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 126/246 (51%), Gaps = 13/246 (5%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 + + VA G+I D ++I + ++ +D A+++ ++SPG Sbjct: 301 PKDKSGNIVAVYYASGEITDYPSSATSEDGIVGSKVIRDLRKLKDNDDVKAVVLRVNSPG 360 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 GSA+A E I+ A++++K +KPVI + + AAS GY ISC ++ IVA T+L GSIG+ Sbjct: 361 GSAFASEQIWHAVKELKTKKPVIVSMGDYAASGGYYISCVADTIVAEPTTLTGSIGIFGM 420 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P VK DK+G+S VK++ + N ++Q ++ Y FV +E R Sbjct: 421 IPNVKGLTDKIGLSYDVVKTNKYADFGNIMRPFNEDEKSLLQMMITEGYDTFVTRCAEGR 480 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 ++ + +++GR+WTG AK++GL+D +GG ++ A + + + ++ Sbjct: 481 HMTKEAIEKIAEGRVWTGETAKELGLVDELGGIDKALDIAVAKAGIEG-YTVVSYPEKQD 539 Query: 258 YWFCDL 263 + L Sbjct: 540 FLSSLL 545 Score = 107 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 98/264 (37%), Gaps = 26/264 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49 ++S+VTL + + + V + + G + Sbjct: 22 LFIISMVTLFGIMSASDTETIVKKNSVMMLDLNGTLVERTQEDPLGILSQLLGDGSNTYG 81 Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 +++ I++ +++ + + +S G S + + I A+ K + + Sbjct: 82 LDDILSSIQKAKENENIKGIYLQANSLGTSYASLQEIRNALLDFKESGKFVIAYADSYTQ 141 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y +S A++ ++ ++ G+ + K L K+GV ++ K K+ PF Sbjct: 142 GLYYLSSAADKVLLNPKGMIEWRGIASAPLFYKDLLQKIGVEMQVFKVGTYKSAVEPFIA 201 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225 +E++P + + + S + VS SRNI D V +D + E+ K GL D Sbjct: 202 TEMSPANREQVTTFITSIWGQVTEGVSTSRNISVDSLNVYADRMLMFYPAEESIKCGLAD 261 Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249 + + +V L L + Sbjct: 262 TLIYRNDVRNYLKKLVEINEDDNL 285 >gi|320449714|ref|YP_004201810.1| signal peptide peptidase SppA [Thermus scotoductus SA-01] gi|320149883|gb|ADW21261.1| signal peptide peptidase SppA [Thermus scotoductus SA-01] Length = 310 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 75/256 (29%), Positives = 127/256 (49%), Gaps = 5/256 (1%) Query: 35 SPHVARIAIRGQIE---DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 V + + G I D ++L+ +I + D A ++ + SPGGS EAI RA++ Sbjct: 44 GEKVVLLEVVGSIPMGKDLEDLLSKIRQAREDQDIRAAVLFVDSPGGSVTETEAIHRALK 103 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + KP++ +AAS GY ++ A+ I T++ GSIGV+ P V+ L KLGV Sbjct: 104 DLAREKPLVAAFGTVAASGGYYVATAAREIFTPATAVTGSIGVIATLPQVQGLLAKLGVQ 163 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 ++ +K +K S + P+ ++Q + +Y FV V+E R++P DK L+DGR Sbjct: 164 VEVLKEGRLKDMGSGLRPLTPEERTLIQGYMREAYELFVARVAEGRHLPKDKVRQLADGR 223 Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN--LSIS 269 I++G +A +GL D G E+ + L + R ++ P + L +S Sbjct: 224 IYSGTQAIALGLADREGYLEDAAKRAAELAGLEEFRLVRYEKPKGLLEGLLGEGFPLGLS 283 Query: 270 SLLEDTIPLMKQTKVQ 285 S E + L+ Q + + Sbjct: 284 SETEQLVSLLGQNRFR 299 >gi|295677195|ref|YP_003605719.1| peptidase S49 [Burkholderia sp. CCGE1002] gi|295437038|gb|ADG16208.1| peptidase S49 [Burkholderia sp. CCGE1002] Length = 333 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 66/289 (22%), Positives = 121/289 (41%), Gaps = 16/289 (5%) Query: 7 KIKTRYVMLSLVTLTVV--YFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIER 59 +I R++ L ++ L V V H A ++I G+I +++++ ++ Sbjct: 49 RIFFRFLFLGVLALVVWGALSFSGERVATTGRHTAMVSIDGEIAADSNANAEDVNTALDS 108 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISC 116 D + +I+ +SPGGS I +++++ + P I V +M AS GY + Sbjct: 109 AFEDSNTAGVILYCNSPGGSPVQAGIINSEVRRLRGKYPSIPLYVVVGDMCASGGYYAAA 168 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 A+ I + S+VGSIGVL +DKLG+ + S K PFS PK + Sbjct: 169 AAEKIYVDKASIVGSIGVLMDSFGFTGLMDKLGIQRRLHTSGENKGFFDPFSPETPKMDE 228 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q ++D + F+ V + R +T + G WTG ++ ++GL D G V + Sbjct: 229 HAQAMLDQIHAQFIDAVRQGRGKRLHETPDMFSGLFWTGQKSVELGLADGFGDTNYVARE 288 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ I D+ ++ + + + K+ Sbjct: 289 IFK------APDIVDYTVKESITDRVARKFGAAVGASAVRAMALGAKIN 331 >gi|224536205|ref|ZP_03676744.1| hypothetical protein BACCELL_01072 [Bacteroides cellulosilyticus DSM 14838] gi|224522189|gb|EEF91294.1| hypothetical protein BACCELL_01072 [Bacteroides cellulosilyticus DSM 14838] Length = 589 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 71/270 (26%), Positives = 129/270 (47%), Gaps = 13/270 (4%) Query: 30 HVEDNSPHVARIAIRGQI------------EDSQELIERIERISRDDSATALIVSLSSPG 77 + + VA G I +S ++I + ++ D A+++ ++SPG Sbjct: 298 PKDKSGNIVAVYYAYGAIDSGSSYAGSEDGINSDKVIRDLRKLKDDKDVKAVVLRVNSPG 357 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 GSA+ E I+ A+ ++K KPVI + + AAS GY ISC ++ IVA T+L GSIG+ Sbjct: 358 GSAFGSEQIWYAVTELKKEKPVIVSMGDYAASGGYYISCNADSIVADPTTLTGSIGIFGM 417 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 +P VK DK+G+S VK++ + +N +MQ++V+ Y FV+ +E R Sbjct: 418 FPNVKGLTDKIGLSFDVVKTNTYADFGAMGRPLNDGEKALMQNMVNEGYELFVKRCAEGR 477 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 + D+ +++GR+WTG +AK++GL+D +GG ++ + + + K+ Sbjct: 478 GMTTDEIKKIAEGRVWTGTKAKELGLVDELGGLDKALEIAIEKAGL-DAYTVMSYPGKKS 536 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 ++ + + Sbjct: 537 FFDMLTDTKPGGYIQSRILKGKVGELYNQF 566 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 96/259 (37%), Gaps = 23/259 (8%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQE 52 +S++ L + S S + V + +RG + + Sbjct: 22 LFFVSILILFSMLSSSESETQVRKNSVMMLDMRGMLSERSQDNPFDIFLSEDETTYGLDD 81 Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ I++ +++ + + S G + E I +A+ K + + + Y Sbjct: 82 ILSSIQKAKENENIKGIYLQAGSMGIGFASLEEIRKALADFKTSGKFVVAYGDQYSQRLY 141 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEV 170 ++ ++ ++ +G G+ + K L K+GV ++ K K+ PF +E+ Sbjct: 142 YLASVADKVLLNPQGAIGWYGLASTPTFYKDLLSKIGVEMQVFKVGTYKSAVEPFISTEM 201 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLIDVVG 228 +P + + +D + + +SESR + +K +D + + + GL D + Sbjct: 202 SPANREQVTVFLDGIWGQMLSDISESRGVSKEKLNEAADKMLMFYPANDCVEYGLADTLV 261 Query: 229 GQEEVWQSLYALGVDQSIR 247 + +V L + Sbjct: 262 YKNDVRNYLKTMVGIDKDD 280 >gi|329957885|ref|ZP_08298360.1| signal peptide peptidase SppA [Bacteroides clarus YIT 12056] gi|328522762|gb|EGF49871.1| signal peptide peptidase SppA [Bacteroides clarus YIT 12056] Length = 588 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 69/245 (28%), Positives = 128/245 (52%), Gaps = 12/245 (4%) Query: 30 HVEDNSPHVARIAIRGQI-----------EDSQELIERIERISRDDSATALIVSLSSPGG 78 + + +A G+I +S+++I+ + ++ D++ A+++ ++SPGG Sbjct: 298 PRDKSGNVIAVYYAYGEIDGGSSASTDEGINSEKVIKDLRKLKDDENVKAVVLRVNSPGG 357 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 SAY E I+ A+ ++K KPVI + + AAS GY I+C ++ IVA T+L GSIG+ Sbjct: 358 SAYGSEQIWYAVNQLKKEKPVIVSMGDYAASGGYYIACNADTIVAEPTTLTGSIGIFGMM 417 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P K +KLGV+ VK++P + +N +MQ V+ Y F+ S+ R Sbjct: 418 PNAKGLTEKLGVNFDVVKTNPYADFGNLTRPMNDGEKGLMQMYVNKGYELFLTRCSDGRG 477 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 I ++ ++ GR+WTG+ AK++GL+D +GG ++ + A + ++ + + Sbjct: 478 ISMEELDKIAQGRVWTGSTAKELGLVDELGGLDKALEIAIAKAGV-DAYTVMNYPKKEGF 536 Query: 259 WFCDL 263 + Sbjct: 537 LESLM 541 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 103/280 (36%), Gaps = 33/280 (11%) Query: 1 MEFVLKK-------IKTRYVMLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQIE-- 48 M+ LK I V+L +++ VV+ SS + V + + G + Sbjct: 1 MKDFLKFTLATVTGIIISSVVLFFISILVVFSMVSSSESETQVRKNSVMMLDLNGTLTER 60 Query: 49 -----------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 +++ I + ++ + + +S G + E I A++ Sbjct: 61 SQENPLDFLMKEDYKTYGLDDILSSIRKAKENEDIKGIYIQATSLGAGFASLEEIRDALK 120 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 K I + Y +S ++ ++ ++ G+ + K L+K+GV Sbjct: 121 DFKESGKFIVAYGDTYTQNLYYLSSVADKVLLNPQGMLEWRGLAATPMFFKDLLEKIGVE 180 Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 ++ K K+ PF +E++P + + + S + V+ESRN+ + +D Sbjct: 181 MQIFKVGTYKSAVEPFISTEMSPANREQVNVYLSSIWGQITSSVAESRNLSVEALNKEAD 240 Query: 210 G--RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 + E+ K GL+D + + +V L + Sbjct: 241 RMLMFYPAEESVKNGLVDTLIYKNDVRDYLKNMVGIDKDD 280 >gi|15827982|ref|NP_302245.1| protease IV, signal peptide peptidase [Mycobacterium leprae TN] gi|221230459|ref|YP_002503875.1| protease IV, signal peptide peptidase [Mycobacterium leprae Br4923] gi|2344854|emb|CAB11456.1| endopeptidase IV [Mycobacterium leprae] gi|13093535|emb|CAC30793.1| protease IV, signal peptide peptidase [Mycobacterium leprae] gi|219933566|emb|CAR71935.1| protease IV, signal peptide peptidase [Mycobacterium leprae Br4923] Length = 602 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 67/276 (24%), Positives = 125/276 (45%), Gaps = 21/276 (7%) Query: 34 NSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALIVSLSSPG 77 + P V + + G I + + ++ DDS +A+++ ++SPG Sbjct: 307 SKPTVVVVTLEGPIVNGRGGPQFLPFGISTGGGDTIAAALREVAADDSVSAIVLRVNSPG 366 Query: 78 GSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GS A E I+R +++ ++R KPV+ + +AAS GY +S ++ IVA ++ GSIGV+ Sbjct: 367 GSVTASETIWREVKRARDRGKPVVVSMGAVAASGGYYVSVGADEIVANPGTITGSIGVIT 426 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 ++ +LGV +V+++ S P+ + D Y F+ V+E Sbjct: 427 GKLVIRDLKGRLGVGSDTVRTNANADAWSANVPFTPEQHTHREAEADLCYADFLERVAEG 486 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R + D ++ GRIWTGA+A + GL+D +GG + L + ++ + P Sbjct: 487 RGMTTDAVDDVARGRIWTGADALERGLVDELGGLVTAVRRAKVLAGLDADVDVRIVSYPG 546 Query: 257 NYWFCD----LKNLSISSLLEDTIPLMKQTKVQGLW 288 + + ++ L D + + V G+ Sbjct: 547 SSLLDMVRPRASSQPGAASLPDAVATLLGRSVAGIL 582 Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 77/209 (36%), Gaps = 2/209 (0%) Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D +I + A + + A+ KP + + Y ++ A + Sbjct: 77 DPRVAGMIARVQLGASPPAAVQELREAVATFSAVKPSLAWAETYPGTLSYYLASAFGEVW 136 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQD 180 + VG +G +++ L K+G+ + V K+ + F+E + + Sbjct: 137 MQPSGSVGLVGFASNATFLRDVLAKVGIEAQFVARGEYKSAANLFTEGGFTDAHREAVSR 196 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +++S + ++ESR I L+D +A GL+D +G ++E + + L Sbjct: 197 MLESLQGQVWQGIAESRRIDPAALNPLADRAPLLRDDAVASGLVDRIGFRDEAYARIAEL 256 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 +SI + L L +S Sbjct: 257 VGAESITPNSSEPQARTEANDGLPRLYLS 285 >gi|269925543|ref|YP_003322166.1| signal peptide peptidase SppA, 36K type [Thermobaculum terrenum ATCC BAA-798] gi|269789203|gb|ACZ41344.1| signal peptide peptidase SppA, 36K type [Thermobaculum terrenum ATCC BAA-798] Length = 339 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 72/273 (26%), Positives = 137/273 (50%), Gaps = 18/273 (6%) Query: 37 HVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 +A I + G I++S + L +++ D A+I+ + SPGG A + Sbjct: 69 KIAIIPVTGTIQESAGGFTTSAATPESLKAMLDQAENDSKVKAIILEVDSPGGEVVASDE 128 Query: 86 IFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 ++R I K R KPV+ + AAS Y IS A++ IVA +L GS+GV+ +Y Sbjct: 129 MYREILDFKQRTRKPVVVRMVSTAASGAYYISMAADKIVANPMTLTGSLGVIMEYMNFSK 188 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 DK+G+S ++S K +PF + + Q++Q +VD +Y+ FV ++++ R +P + Sbjct: 189 AADKVGISQVVIRSGEFKDIGNPFRDPTKEERQILQQLVDEAYNQFVNVIAQGRKMPTSR 248 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L+DGR+++G +AK++GL+D +G ++ Q L ++ ++ + + Sbjct: 249 VRQLADGRVYSGQQAKQLGLVDELGNLDKAVQVAEQLAGIKNA-QVVRYRHSVSLLSLLS 307 Query: 264 KNLSISSLLEDTIPLMKQTKVQ---GLWAVWNP 293 L +S+ D + +++ L ++ P Sbjct: 308 SRLQMST-EPDAMKILRSAGYDITPRLMYIYRP 339 >gi|118462440|ref|YP_883579.1| signal peptide peptidase SppA, 67K type [Mycobacterium avium 104] gi|254776880|ref|ZP_05218396.1| signal peptide peptidase SppA, 67K type [Mycobacterium avium subsp. avium ATCC 25291] gi|118163727|gb|ABK64624.1| signal peptide peptidase SppA, 67K type [Mycobacterium avium 104] Length = 595 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 73/288 (25%), Positives = 129/288 (44%), Gaps = 32/288 (11%) Query: 36 PHVARIAIRGQIED----------------SQELIERIERISRDDSATALIVSLSSPGGS 79 P VA I + G + D S + + + DD+ +A+++ ++SPGGS Sbjct: 302 PTVAVINVDGTLVDGRGGPHFLPFGAATVGSDTIAPALREAAADDAVSAIVLRVNSPGGS 361 Query: 80 AYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E ++R +++ + R KPV+ + +AAS GY +S A++ IVA ++ GSIGV+ Sbjct: 362 VTASETLWREVKRARERGKPVVASMGAVAASGGYYVSVAADAIVANPATITGSIGVITGK 421 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 ++ L +LGV +V+++ S + P+ + D Y FV V+E RN Sbjct: 422 LVIRDLLGRLGVGSDTVRTNANADAWSIDAPFTPEQRAHREAEADLVYTDFVSRVAEGRN 481 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + D ++ GR+WTGA+A + GL+D +GG + L ++ P Sbjct: 482 LTTDAVERVARGRVWTGADAHERGLVDELGGFRIAVRRAKILAGLDEDADVRIVTYPSGS 541 Query: 259 WFCDLK----NLSISSLLEDTIPLM----KQTKVQ-------GLWAVW 291 L+ + + L D + + + G A+W Sbjct: 542 LLDVLRPRASSQPAAVSLPDALGALTVKILGAILDNVERSCSGASALW 589 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 89/245 (36%), Gaps = 6/245 (2%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 ++ ++ I R + D LI + + A + + AI KP + Sbjct: 66 ASLRDTVDAIHRAAEDPRVAGLIARVQLAPSPSAAVQELREAIVAFTAAKPSLAWAETYP 125 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPS 165 + Y ++ A I VG IG +++ LDK G+ + V K+ Sbjct: 126 GTLSYYLASAFGEIWMQPGGSVGLIGFASNATFLRDALDKAGIEAQFVARGEYKSAVNRF 185 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 + + ++DS + V+ESR + D L+D +A GL+D Sbjct: 186 TEHGFTEAHREAVTRMLDSVQEQVWQAVAESRKLDTDALDALADRAPLLRQDALDSGLVD 245 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 +G +++ + + L Q + D PP+ Y + S L +P + + Sbjct: 246 RIGFRDQAYDRIAELVGVQDVSP--DTEPPRLYVSRYAG--AARSRLSPPVPSLPGRRRP 301 Query: 286 GLWAV 290 AV Sbjct: 302 PTVAV 306 >gi|41410286|ref|NP_963122.1| hypothetical protein MAP4188 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41399120|gb|AAS06738.1| SppA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 595 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 73/288 (25%), Positives = 129/288 (44%), Gaps = 32/288 (11%) Query: 36 PHVARIAIRGQIED----------------SQELIERIERISRDDSATALIVSLSSPGGS 79 P VA I + G + D S + + + DD+ +A+++ ++SPGGS Sbjct: 302 PTVAVINVDGTLVDGRGGPHFLPFGAATVGSDTIAPALREAAADDAVSAIVLRVNSPGGS 361 Query: 80 AYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E ++R +++ + R KPV+ + +AAS GY +S A++ IVA ++ GSIGV+ Sbjct: 362 VTASETLWREVKRARERGKPVVASMGAVAASGGYYVSVAADAIVANPATITGSIGVITGK 421 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 ++ L +LGV +V+++ S + P+ + D Y FV V+E RN Sbjct: 422 LVIRDLLGRLGVGSDTVRTNANADAWSIDAPFTPEQRAHREAEADLVYTDFVSRVAEGRN 481 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + D ++ GR+WTGA+A + GL+D +GG + L ++ P Sbjct: 482 LTTDAVERVARGRVWTGADAHERGLVDELGGFRIAVRRAKILAGLDEDADVRIVTYPSGS 541 Query: 259 WFCDLK----NLSISSLLEDTIPLM----KQTKVQ-------GLWAVW 291 L+ + + L D + + + G A+W Sbjct: 542 LLDVLRPRASSQPAAVSLPDALGALTVKTLGAILDNVERSCSGASALW 589 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 89/245 (36%), Gaps = 6/245 (2%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 ++ ++ I R + D LI + + A + + AI KP + Sbjct: 66 ASLRDTVDAIHRAAEDPRVAGLIARVQLAPSPSAAVQELREAIVAFTAAKPSLAWAETYP 125 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPS 165 + Y ++ A I VG IG +++ LDK G+ + V K+ Sbjct: 126 GTLSYYLASAFGEIWMQPGGSVGLIGFASNATFLRDALDKAGIEAQFVARGEYKSAVNRF 185 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 + + ++DS + V+ESR + D L+D +A GL+D Sbjct: 186 TEHGFTEAHREAVTRMLDSVQEQVWQAVAESRKLDTDALDALADRAPLLRQDALDSGLVD 245 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 +G +++ + + L Q + D PP+ Y + S L +P + + Sbjct: 246 RIGFRDQAYDRIAELVGVQDVSP--DTEPPRLYVSRYAG--AARSRLSPPVPSLPGRRRP 301 Query: 286 GLWAV 290 AV Sbjct: 302 PTVAV 306 >gi|315225469|ref|ZP_07867282.1| signal peptide peptidase SppA [Capnocytophaga ochracea F0287] gi|314944567|gb|EFS96603.1| signal peptide peptidase SppA [Capnocytophaga ochracea F0287] Length = 590 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 106/237 (44%), Gaps = 9/237 (3%) Query: 31 VEDNSPHVARIAIRG---------QIEDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 + + +A I G +I ++ +I + + S + A+++ ++SPGG A Sbjct: 303 GKHSKNKIAVIYADGQIMQGEGRAEIVGNETIIRALRKASDNKDIKAIVLRINSPGGDAL 362 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 A E + R I+ K +K V + AAS GY I+C +N I A ++ GSIGV P V Sbjct: 363 ASELMHREIEVTKKKKKVYVSMGNYAASGGYYIACNANRIFAEAGTITGSIGVFGVIPNV 422 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 G++ ++V + P S F + + + M + ++ Y F+ V++ R Sbjct: 423 NALATNWGINAETVSTHPNAQFYSVFQKPTEQFKKEMTESIEQVYTVFLDRVAKGRGKTV 482 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + ++ GR+W+G EA GL+D +G + + R + ++ Sbjct: 483 AQIDSIAQGRVWSGKEALANGLVDEIGSLNDAIAYAAKDNGLKEYRTVSYPTFEMDF 539 Score = 95.1 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 104/274 (37%), Gaps = 25/274 (9%) Query: 1 MEFVLKKIKTRYVMLSLVTLTV---VYFSWSSHVEDNSPHVARIAIRGQIEDSQE----- 52 + F + + L +++ + V + V V ++ + D E Sbjct: 12 LGFFISMGICFILFLIFISVMIGSVVGSAKGEEVSVKDNSVLELSFEEPLVDYGERITFK 71 Query: 53 --------------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 ++ IE D + + + G + + +A++ K Sbjct: 72 DFDYTSESYNGLNATLKAIENAKTDKRIKGIYLKSTGNIGGLAFAQELRKALEDFKTSGK 131 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 + + + Y + ++ + ++ V G+ + + K +K GV ++ ++ Sbjct: 132 FVLAYSDEISQLDYYLQTVADKVYISQLGSVALRGLSSEVLFFKGLQEKSGVQMEVIRHG 191 Query: 159 PMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTG 215 K+ PF + ++ + + +++ + ++ V +++SRNIP +K ++ T Sbjct: 192 KYKSAVEPFLDNKMSDNNRKQLTELLSAMWNVIVTDIAKSRNIPVEKLNEIATNVGGRTA 251 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 AK GLID + ++E Q + +SI K+ Sbjct: 252 QLAKNNGLIDGILFRDEFEQIICDKTGSKSIDKV 285 >gi|83748461|ref|ZP_00945483.1| protease IV [Ralstonia solanacearum UW551] gi|83724872|gb|EAP72028.1| protease IV [Ralstonia solanacearum UW551] Length = 378 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 70/291 (24%), Positives = 129/291 (44%), Gaps = 15/291 (5%) Query: 7 KIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60 +I R+V L ++ + F S+ + H A +++ G+I ++ + +E Sbjct: 92 RIFFRFVTLGILGGLLYLFASFEGETVGSGRHTAVVSLDGEIAASTNASAENINASLEAA 151 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCA 117 DD+ +I+ ++SPGGS I I++++ + I V EM AS GY ++ A Sbjct: 152 FADDNTAGVILKINSPGGSPVQAGMINDDIRRLRAKHKDIPLYVVVEEMCASGGYYVAAA 211 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 ++ I + S+VGSIGVL +DK+GV + + + K PFS V P+ Q Sbjct: 212 ADKIYVDKASIVGSIGVLMDGFGFTGLMDKVGVERRLLTAGANKGMLDPFSPVPPQQRQF 271 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 Q ++D + F+ +V + R L G WTG++A ++GL D +G + V + Sbjct: 272 AQAMLDEVHQQFIDVVKQGRGSRLKDDPQLFSGLFWTGSKAVELGLADGIGSADFVAR-- 329 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + D+ +N+ + + L +++ L Sbjct: 330 ----NVIKAPDMVDYTVKENFAERVARKFGTAMGAGAIKALAATGQLKLLM 376 >gi|239814389|ref|YP_002943299.1| peptidase S49 [Variovorax paradoxus S110] gi|239800966|gb|ACS18033.1| peptidase S49 [Variovorax paradoxus S110] Length = 347 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 61/287 (21%), Positives = 122/287 (42%), Gaps = 12/287 (4%) Query: 6 KKIKTR----YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIER 56 ++ KT ++ + + + + + H A + I+G+I + + ++ Sbjct: 61 RRWKTFTRLSWLAFFIFLVWLAMSRSTPSTAKTTAHTAVVEIKGEIANGGDASAEFVVAA 120 Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLI 114 ++ D+ A +++ ++SPGGS I I+++K + KP+ V E ASA Y I Sbjct: 121 MKTAFEDEGAKGIVLLINSPGGSPVQAGIISDEIKRLKAKHKKPIYAVVEETCASAAYYI 180 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I + S+VGSIGVL ++K+GV + + + K PFS ++ Sbjct: 181 AAATDKIFVDKASIVGSIGVLMDGFGFTGVMEKVGVERRLLTAGENKGFLDPFSPMSDAQ 240 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 Q +++ + F+ +V R T L G W+G +A + GL D +G + V Sbjct: 241 RAHAQAMLNQIHTQFINVVKNGRGDRLKLDTPGLFSGLFWSGEQAVEFGLADQLGNVDFV 300 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 + + + + F + L+ P ++ Sbjct: 301 AREVIKAEEVTDYTRRDNVAEKLAKKFGAAMGAATVRSLQSATPALR 347 >gi|91773876|ref|YP_566568.1| signal peptide peptidase A [Methanococcoides burtonii DSM 6242] gi|91712891|gb|ABE52818.1| signal peptide peptidase, peptidase family S49 [Methanococcoides burtonii DSM 6242] Length = 410 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 72/286 (25%), Positives = 136/286 (47%), Gaps = 14/286 (4%) Query: 7 KIKTRYVMLSLV--TLTVVYFSWSSHVEDNSPHVARIAIRGQI-----------EDSQEL 53 I V++ ++ + V+Y S+ + VA I ++G + S+++ Sbjct: 113 YIAVISVLMLIIGGSFAVIYMSFGGDIYTTDDKVAVIYVQGFMLTGNLPSGFGYATSEDV 172 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGY 112 + + + DDS A+++ ++S GGS A E I I++V++ PV+ + ++AASA Y Sbjct: 173 CNSLRKATDDDSVKAIVLRVNSGGGSPVAAEEIVTEIKRVQDMGVPVVISMGDVAASAAY 232 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 IS +++IVA ++ GSIGV+ Y F D+ G+ K K + + Sbjct: 233 YISAPADLIVANPSTTTGSIGVISVYTNRSEFYDEEGIEFYVSKLGSFKDVGGDWRGLTS 292 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 + + + +VV Y F+ V+E+RN+ + ++DGRI+ G EA+K+GL+D +G + Sbjct: 293 EEKEYVDNVVLDVYDLFITSVAENRNMTKSEVKDIADGRIYIGKEAQKIGLVDELGNFYD 352 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278 + LG + + N P ++SS + + Sbjct: 353 AIDAAAELGGIEGEHLVYYINKPSLSSILFGSEETMSSQAAEQLAS 398 >gi|218128954|ref|ZP_03457758.1| hypothetical protein BACEGG_00527 [Bacteroides eggerthii DSM 20697] gi|217988917|gb|EEC55234.1| hypothetical protein BACEGG_00527 [Bacteroides eggerthii DSM 20697] Length = 588 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 129/245 (52%), Gaps = 12/245 (4%) Query: 30 HVEDNSPHVARIAIRGQI-----------EDSQELIERIERISRDDSATALIVSLSSPGG 78 + + +A G+I +S+++I + ++ D++ A+++ ++SPGG Sbjct: 298 PKDKSGNVIAVYYAYGEIDGGSSASTEEGINSEKVIRDLRKLKDDENVKAVVLRVNSPGG 357 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 SAY E I+ A++++K KPVI + + AAS GY I+C ++ IVA T+L GSIG+ Sbjct: 358 SAYGSEQIWYAVEQLKKEKPVIVSMGDYAASGGYYIACNADTIVAEPTTLTGSIGIFGMM 417 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P K +KLG++ VK++P + +N +MQ V++ Y F+ S+ R Sbjct: 418 PNAKGLTEKLGLNFDVVKTNPYADFGNLTRPMNDGEKGLMQMYVNNGYKLFLTRCSDGRG 477 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 I ++ ++ GR+WTG+ AK++GL+D +GG ++ + A + ++ + + Sbjct: 478 ISMEELDKIAQGRVWTGSTAKELGLVDELGGLDKALEIAVAKAGV-DAYTVMNYPKKEGF 536 Query: 259 WFCDL 263 + Sbjct: 537 LESLM 541 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 104/281 (37%), Gaps = 33/281 (11%) Query: 1 MEFVLKK-------IKTRYVMLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQIE-- 48 M+ LK I V+L +++ VV+ SS + V + + G + Sbjct: 1 MKDFLKFTLATVTGIIVSSVVLFFISILVVFSMVSSSESETQVRKNSVMMLDLNGTLAER 60 Query: 49 -----------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 +++ I + +++ + + +S + E I A++ Sbjct: 61 SQENPLDILMKDDYKTYGLDDVLSSIRKAKENENIKGIYIQANSLSAGYASLEEIRHALK 120 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 K I + + Y +S ++ ++ ++ G+ + K L+K+GV Sbjct: 121 DFKESGKFIVAYGDSYTQSLYYLSSIADKVMLNPQGMLEWRGLAANPMFFKDLLEKIGVE 180 Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 ++ K K+ PF +E++P + + + S + ++ESRN+ + +D Sbjct: 181 MQVFKVGTYKSAVEPFIATEMSPANREQVNVYLSSVWGQITGDIAESRNLSVEALNKEAD 240 Query: 210 G--RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + E+ K GL+D + + +V L L Sbjct: 241 RMLMFYPAEESVKNGLVDTLIYKNDVRDYLKTLVGIDKDDD 281 >gi|237748404|ref|ZP_04578884.1| peptidase U7 family [Oxalobacter formigenes OXCC13] gi|229379766|gb|EEO29857.1| peptidase U7 family [Oxalobacter formigenes OXCC13] Length = 315 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 70/274 (25%), Positives = 123/274 (44%), Gaps = 14/274 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIE 58 + K+ T +++ ++ S H A + IRG I + +I+ ++ Sbjct: 30 IFFKLTTIILVIFVIFSIKSLSFSSKETVPVQKHTAMVEIRGTIDSSGNSSAANIIKALD 89 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLIS 115 + + AT +I+ ++SPGGS I+ I+++ KP+ V E+ AS GY ++ Sbjct: 90 KAYDEPLATGVILKINSPGGSPVQAGMIYDEIRRLREVHPDKPLYVVVEELCASGGYYVA 149 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + SLVGSIGV+ V + KLGV + + + K PFS P+ V Sbjct: 150 AAADKIFVDKASLVGSIGVMINGFGVTGLMQKLGVERRLLTAGEYKGFLDPFSPQTPQQV 209 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q Q +++ + F+ +V + R + + G ++ G EA K+GL D +G E V + Sbjct: 210 QYAQSMLNQIHQQFIEVVRQGRGDRLKENREIYSGLVFLGPEAIKMGLADELGTVESVAR 269 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 + I D+ + LK S Sbjct: 270 DVIG------EPVIVDYTEQERLSDRFLKKFGAS 297 >gi|134295145|ref|YP_001118880.1| peptidase S49 [Burkholderia vietnamiensis G4] gi|134138302|gb|ABO54045.1| peptidase S49 [Burkholderia vietnamiensis G4] Length = 329 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 115/270 (42%), Gaps = 16/270 (5%) Query: 7 KIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIER 59 KI R+ L + L + H A + I G+I +++++ ++ Sbjct: 44 KIFFRFAFLGVFALLAFALIDFSGDSKFSSGRHTALVTIDGEIAAGTNANAEDINTALDA 103 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISC 116 DD +++ ++SPGGS ++ I+++ KP+ V ++ AS GY I+ Sbjct: 104 AFDDDGTAGVVLRINSPGGSPVQAGMVYDEIRRLRKTYPDKPLYVVVTDICASGGYYIAS 163 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 A++ I + S+VGSIGVL + KLGV + S K PFS PK Sbjct: 164 AADKIFVDKASIVGSIGVLMDGFGFTGLMSKLGVERRLHTSGENKGFYDPFSPETPKMDA 223 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q ++D + F++ V + R +T + G WTG ++ ++GL D G + V + Sbjct: 224 HAQALLDQVHAQFIKAVKDGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDTVARD 283 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 + + D+ ++ + Sbjct: 284 VLK------APDLVDYTVKESITNRVARKF 307 >gi|77460384|ref|YP_349891.1| peptidase S49, SppA [Pseudomonas fluorescens Pf0-1] gi|77384387|gb|ABA75900.1| putative peptidase [Pseudomonas fluorescens Pf0-1] Length = 329 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 63/298 (21%), Positives = 124/298 (41%), Gaps = 24/298 (8%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSS------HVEDNSPHVARIAIRGQIED-----SQELI 54 ++ + +L+ + L V ++ + + A I + G I D + ++ Sbjct: 39 RRWGIFFKLLTFIYLFVALILFTPLMDMEKSATRSGNYTALIDVTGMIADKEPASADNIV 98 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAG 111 + D +I+ ++SPGGS ++ I++ + + + ++ AS Sbjct: 99 GSLRAAFEDKKVKGVILRINSPGGSPVQSGYVYDEIKRLRGLHPDTKLYAVISDLGASGA 158 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I A + SLVGSIGV ++KLGV ++ S KA PF Sbjct: 159 YYIASAADQIYADKASLVGSIGVTAAGYGFVGTMEKLGVERRTYTSGEHKAFLDPFQPQK 218 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGG 229 P+ Q V+D+++ F+ V + R L G +W+G +A +GLID +G Sbjct: 219 PEETAFWQSVLDTTHKQFINSVKQGRGDRLKDKEHPELFSGLVWSGEQALPLGLIDGLGN 278 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 V + + +++ D+ ++ + K L S + + + + L Sbjct: 279 ASSVARDVIG------EKELVDFTVQESPFDRFSKKLGAS--VAEKLAMWMGFNGPSL 328 >gi|115379446|ref|ZP_01466546.1| signal peptide peptidase SppA, 67K type [Stigmatella aurantiaca DW4/3-1] gi|310821059|ref|YP_003953417.1| peptidase s49, protease iv [Stigmatella aurantiaca DW4/3-1] gi|115363555|gb|EAU62690.1| signal peptide peptidase SppA, 67K type [Stigmatella aurantiaca DW4/3-1] gi|309394131|gb|ADO71590.1| Peptidase S49, protease IV [Stigmatella aurantiaca DW4/3-1] Length = 592 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 120/246 (48%), Gaps = 9/246 (3%) Query: 30 HVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSA 80 ++ +A + G+I + + + + ++ D+ A+++ ++SPGGSA Sbjct: 301 RSKEGKNRIAVVYAEGEIVNGEGRPSQTGGDRISRELRKLRLDEDVKAVVLRVNSPGGSA 360 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 A + I R + + KPV+ + AAS GY IS + I A T++ GSIGV P Sbjct: 361 SASDLIQREVIVTRKVKPVVISMGSYAASGGYWISTYGDRIFAQPTTITGSIGVFGMLPN 420 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 V+ + G++ SV+++ M + + +Q +VD Y F+ V+E R +P Sbjct: 421 VQKLANTHGITFDSVQTAKMANPATLARPKTEAELARIQHMVDRIYEQFLSKVAEGRKLP 480 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ ++ GR+W+G EA+K+GL+D VGG ++ + + + + PK Sbjct: 481 RERVHEIAQGRVWSGEEARKLGLVDEVGGLQDAVKFAAEQAGVGNDYWMDLPDAPKPLLQ 540 Query: 261 CDLKNL 266 ++++ Sbjct: 541 QLMESM 546 Score = 83.9 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 105/286 (36%), Gaps = 39/286 (13%) Query: 1 MEFVLKKIKTRYVMLSL-------VTLTVVYFSWSSHVEDNSPHVARIAIRGQIED---- 49 M+ LK + L + V L V + ++ S V + + + D Sbjct: 1 MKDFLKTFFACLIALGIFVAGAFVVLLGFVALAGAAKPSVPSKAVLVMDLDMNLLDHTNK 60 Query: 50 ---SQELIERI-----------------ERISRDDSATALIVSLS-SPGG---SAYAGEA 85 S+ L + ++ + D+ L + + +P G A Sbjct: 61 AGPSEILQSALQGEKTRVVALATAVAAVDKAAEDERIVGLFLIGNITPVGYGSGPAALRE 120 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + AI + K +KPV+ + Y ++ A++ +V + G++ + + Sbjct: 121 LRAAILRFKAKKPVLAY-NVDWGKHDYYLASAASTLVVNPAGHLEVSGLVSEPVFFADAF 179 Query: 146 DKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 K G+ ++ + K+ PF + ++ + + MQ ++D + + V R P + Sbjct: 180 QKYGIEVQVTRVGRYKSAVEPFILNRMSDPSREQMQKLLDDLWAEWKANVGVDRKQPPEA 239 Query: 204 TLVLSDGR-IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 ++D + I EA GL+D V +E+ + L L K Sbjct: 240 IQAVADEKGILEPEEALAAGLVDRVAAFDEILEELKTLAGTDDKEK 285 >gi|283785012|ref|YP_003364877.1| protease IV [Citrobacter rodentium ICC168] gi|282948466|emb|CBG88055.1| protease IV [Citrobacter rodentium ICC168] Length = 618 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 75/271 (27%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 + D VA + G I D +E +I D A+++ ++SPGGS Sbjct: 319 NTPADTGSSVAVVFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + K KPV+ + MAAS GY IS ++ IVA ++L GSIG+ Sbjct: 379 VTASEVIRSELAAAKAAGKPVVVSMGGMAASGGYWISTPASYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+ Q+MQ +++ Y F+ LV+ESR Sbjct: 439 NTVENSLDSIGVHTDGVATSPLAD-ISMTKALPPEVQQIMQLSIENGYKRFITLVAESRK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L I + ++ Sbjct: 498 STPEQVDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHIDYYQSEPSF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + ++S S + +P Q + A Sbjct: 557 FDMVMDSMSGS--VRAMLPQAIQAMLPAPLA 585 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 47/308 (15%), Positives = 98/308 (31%), Gaps = 57/308 (18%) Query: 2 EFVLKKIKTRYVMLSLV------------TLTVVYFSWSSHVEDNSPHVAR----IAIRG 45 F+ K + +L+ V L V + +S VAR + I G Sbjct: 6 RFIAGFFKWTWRLLNFVREMVLNLLFIFLILVGVGIWMQVNNGASSEKVARGALLLDISG 65 Query: 46 QIEDSQ---------------------------ELIERIERISRDDSATALIVSLSSPGG 78 I D +++ I + D + T +++ L G Sbjct: 66 VIVDKPSSTNRLGVIGRQLFGASSDRLQENSLFDIVNTIRQAKDDSNITGIVMDLKDFAG 125 Query: 79 SAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 + + I +A+++ ++ + + + + Y ++ +N I V G Sbjct: 126 ADQPSMQYIGKALREFRDSGKPVYAIGDNFSQGQYYLASFANKIWLTPQGSVDLHGFATN 185 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 Y K LDKL VS + K+ PF +++P A + + + ++ ++ Sbjct: 186 GLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTIAA 245 Query: 196 SRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQEE---VWQSLYALGVDQ 244 +R I + L+ T A L+D + E + Sbjct: 246 NRQITAQQVFPGAQGVLDGLTKVGGDTAKYALDHKLVDALLSSSEMEKALSKAFGWSKSD 305 Query: 245 SIRKIKDW 252 + + + Sbjct: 306 NNYRAISY 313 >gi|154489868|ref|ZP_02030129.1| hypothetical protein PARMER_00097 [Parabacteroides merdae ATCC 43184] gi|154089310|gb|EDN88354.1| hypothetical protein PARMER_00097 [Parabacteroides merdae ATCC 43184] Length = 591 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 14/246 (5%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIED--------------SQELIERIERISRDDSATAL 69 S ++N +A + G+I D S+E+ ++ ++ DD A+ Sbjct: 292 IVSIKVKEKENKNKIAVLYAEGEIRDEDSSSPFSADEQVISEEMANKLRKLKDDDDVKAV 351 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + ++SPGGSAY E I++ + ++K +KP++ + AAS GY ISCA+N IVA T+L Sbjct: 352 VFRVNSPGGSAYISEQIWKEVVELKAKKPIVVSMGNYAASGGYYISCAANKIVAERTTLT 411 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV DK+GV+ VK++ + ++Q V+ +Y F Sbjct: 412 GSIGVFGVVRNFTGTFDKVGVTTDIVKTNTFADLGDISRPMREDEKALIQRGVEQTYDLF 471 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 + ++ R + + + GR+WTG +A + GL+D +GG ++ + L I Sbjct: 472 LTRCADGRGMTKAEIDSIGQGRVWTGEQALERGLVDQLGGMDDAIKEAATLAELTDYSVI 531 Query: 250 KDWNPP 255 P Sbjct: 532 VADGPK 537 Score = 95.4 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 87/260 (33%), Gaps = 23/260 (8%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------------QELIE 55 + + SS + + V ++++ G + D ++I+ Sbjct: 27 IFFIIGVAASADGSSEYKPDKNTVFKLSLDGVLVDQAVKNPFSELMGESSNQMAVSDVIK 86 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 I R +D+ + + S EAI R ++ K+ I + Y + Sbjct: 87 AIRRAKANDNIKGIYLEAGSLSTGFAGIEAIRRELEDFKDSGKFIVSYGDYYTQGAYYLC 146 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVNPK 173 ++ + V +G+ Q + +K+GV K K+ PF + + Sbjct: 147 SVADSVFLNPQGSVSLVGLASQGLFFTGLAEKIGVEHYIFKVGTYKSAVEPFFLKKFSDA 206 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE--AKKVGLIDVVGGQE 231 + + + S + + +SRNI D+ + + G A L D + + Sbjct: 207 NREQLTSFLGSVWGNLTTAIEKSRNISSDELDRYLNEGLAMGQASNAVDYKLADGLRYRY 266 Query: 232 EVWQSLYALGVDQSIRKIKD 251 EV + + K+K Sbjct: 267 EVENCVKEMAGQDVKGKLKT 286 >gi|258645667|ref|ZP_05733136.1| signal peptide peptidase SppA [Dialister invisus DSM 15470] gi|260403034|gb|EEW96581.1| signal peptide peptidase SppA [Dialister invisus DSM 15470] Length = 315 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 74/308 (24%), Positives = 140/308 (45%), Gaps = 25/308 (8%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWS----SHVEDNSPHVARIAIRGQI--------- 47 M+ +KK + + +++ F S + +VA I I G I Sbjct: 1 MDSKIKKWIMVMLAVLVISAAAAGFMPEWKKTSAIGKGKDYVAEIRIDGTIYGGPRNGTL 60 Query: 48 ------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVI 100 S++++ +E+ +D+ +++ ++SPGGS A + I + K+KN KP++ Sbjct: 61 LGASEGVSSEQVMYEMEQARKDNRVKGVLLRINSPGGSTGATQEIAEEMDKIKNAGKPIV 120 Query: 101 TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160 + +M ASAGY ++ + + A +L GSIGV Y V+ +DKLGV + +KS Sbjct: 121 VSMGDMCASAGYWLASKGDYVFANPATLTGSIGVYMDYTNVEELMDKLGVKNEKIKSGAH 180 Query: 161 KAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKK 220 K S + + +M+Q +VD Y FV+ V++ R + + ++DGRI TG +A + Sbjct: 181 KDILSMYRPMTGDEQKMLQTMVDDIYSQFVKTVADGRRMEESRVRSVADGRILTGQQAME 240 Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 +GL+D +G + + + P K Y ++ ++ + + Sbjct: 241 LGLVDAMGNYYDALNYAGGVAGIEGDSV-----PVKRYSVGTSWKNILAGEMDSAVRSLA 295 Query: 281 QTKVQGLW 288 + +W Sbjct: 296 KNISDNIW 303 >gi|262368622|ref|ZP_06061951.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262316300|gb|EEY97338.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 343 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 73/280 (26%), Positives = 126/280 (45%), Gaps = 18/280 (6%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI------EDSQELIERI 57 K + Y++ L +T S SS S H+A + I G I +S + I+ + Sbjct: 54 FFKCLTFAYLLFILFAMTKSC-STSSTDATASKHIAVVDIVGTIAADEQSVNSDDTIKSL 112 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLI 114 ++ + + A++++++SPGGS + I++ IQ + + K + + + AS Y I Sbjct: 113 KKAFENKQSQAVVLNINSPGGSPVQSDEIWQEIQYLKKTHSDKKLYAVIGDTGASGAYYI 172 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I+ +SLVGSIGV+ V + KLGV +++ S KA S VNP Sbjct: 173 ASAADEILVNPSSLVGSIGVIMPNYGVNGLMQKLGVEDRTMTSGQNKALLSMTQPVNPAQ 232 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 +Q V+D+ + F+ V + R L G WTG +A K+G+ D +G + Sbjct: 233 RAHVQGVLDNVHEHFINAVKQGRGKKLKSNDPALFSGLFWTGDQAVKLGIADRIGNLHTL 292 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273 + L + K D+ + L L S Sbjct: 293 KREL-------NTDKAMDYTVVHSPLDAVLGRLGTSMGAG 325 >gi|206559379|ref|YP_002230140.1| family S49 serine peptidase [Burkholderia cenocepacia J2315] gi|206561219|ref|YP_002231984.1| family S49 serine peptidase [Burkholderia cenocepacia J2315] gi|198035417|emb|CAR51293.1| serine peptidase, family S49 [Burkholderia cenocepacia J2315] gi|198037261|emb|CAR53183.1| serine peptidase, family S49 [Burkholderia cenocepacia J2315] Length = 330 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 68/292 (23%), Positives = 125/292 (42%), Gaps = 17/292 (5%) Query: 7 KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 KI R+ + L+ ++ FS S + H A + I G+I ++ ++ ++ Sbjct: 44 KIFFRFAFLAVFVLLAFALIDFSSDSKFSSSGRHTALVTIDGEIAAGVNANADDINTALD 103 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115 DD +++ ++SPGGS ++ I++++ + KP+ V +M AS GY I+ Sbjct: 104 AAFDDDGTVGVVLRINSPGGSPVQAGMVYDEIRRLRKKYPDKPLYVVVTDMCASGGYYIA 163 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL + KLGV + S K PFS PK Sbjct: 164 SAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFYDPFSPETPKMD 223 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q+++D + F++ V + R +T + G WTG ++ ++GL D G + V + Sbjct: 224 AHAQELLDQVHAQFIKAVKDGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDTVAR 283 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + D+ ++ + + L L Sbjct: 284 DVLK------APDLVDYTVKESLTNRVARKFGAAVGGAAMKALTAGGASVSL 329 >gi|209528245|ref|ZP_03276710.1| signal peptide peptidase SppA, 67K type [Arthrospira maxima CS-328] gi|209491317|gb|EDZ91707.1| signal peptide peptidase SppA, 67K type [Arthrospira maxima CS-328] Length = 503 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 66/254 (25%), Positives = 126/254 (49%), Gaps = 9/254 (3%) Query: 32 EDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYA 82 ++ +A + G+I D E + R+ +D +++ ++SPGGSA A Sbjct: 216 PNSRNIIAVVYADGEIVDGRGGIGQVGGDRFSEELRRLRDNDRVKGIVLRVNSPGGSATA 275 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I R +Q + KP+I + AAS GY I+ S+ I+A T++ GSIGV + Sbjct: 276 SEVIAREVQLTREEKPIIVSMGNAAASGGYWIAMGSDRILAEPTTVTGSIGVFGLLFNAQ 335 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 ++ G++ VK+ P S + ++ +Q +VD Y FV V++ R++P + Sbjct: 336 DIANQNGITWDGVKTGPFADLNSISRPKTDQELEKVQQMVDLIYQRFVSSVAQLRDLPQE 395 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + L +S GR+W+G +A+ +GL+D +GG ++ ++ K+ ++ ++ Sbjct: 396 EVLEMSQGRVWSGVQAEALGLVDQLGGLQDAIAAVAEKAELGDDWKLAEYPRIPSFEERL 455 Query: 263 LKNLSISSLLEDTI 276 L++L + D + Sbjct: 456 LESLRTEATPADPL 469 Score = 63.9 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 67/165 (40%), Gaps = 3/165 (1%) Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + RA++ K I Y + ++ I+ V G Q ++ Sbjct: 25 EVRRALEGFKESGKTIIAYDTDWTEREYYLGSVADEIIIHPMGTVEMSGFSSQTVFLAGA 84 Query: 145 LDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L++ G+ ++ + K+ PF E++P+ Q MQ ++ + F ++ SR++ Sbjct: 85 LERFGIGVQVTRVGQYKSAVEPFLRQEMSPENRQQMQQLLGDLWGEFTGAIASSRSLTTA 144 Query: 203 KTLVLSDG-RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + + + A+AK ++D + ++EV L L ++ Sbjct: 145 QLQQIVNQDGFLMAADAKDREMVDQIAHRDEVAAQLRELTGEKEE 189 >gi|107022191|ref|YP_620518.1| peptidase S49 [Burkholderia cenocepacia AU 1054] gi|116689137|ref|YP_834760.1| peptidase S49 [Burkholderia cenocepacia HI2424] gi|170732425|ref|YP_001764372.1| peptidase S49 [Burkholderia cenocepacia MC0-3] gi|254245930|ref|ZP_04939251.1| Periplasmic serine protease (ClpP class) [Burkholderia cenocepacia PC184] gi|105892380|gb|ABF75545.1| peptidase S49 [Burkholderia cenocepacia AU 1054] gi|116647226|gb|ABK07867.1| peptidase S49 [Burkholderia cenocepacia HI2424] gi|124870706|gb|EAY62422.1| Periplasmic serine protease (ClpP class) [Burkholderia cenocepacia PC184] gi|169815667|gb|ACA90250.1| peptidase S49 [Burkholderia cenocepacia MC0-3] Length = 330 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 68/292 (23%), Positives = 122/292 (41%), Gaps = 17/292 (5%) Query: 7 KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 KI R+ + L+ ++ FS S + H A + I G+I ++ ++ ++ Sbjct: 44 KIFFRFAFLGVFVLLAFALIDFSSDSKFSSSGRHTALVTIDGEIAAGVNANADDINTALD 103 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLIS 115 DD +++ ++SPGGS ++ I+++ KP+ V +M AS GY I+ Sbjct: 104 AAFDDDGTVGVVLRINSPGGSPVQAGMVYDEIRRLRGKYPDKPLYVVVTDMCASGGYYIA 163 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL + KLGV + S K PFS PK Sbjct: 164 SAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFYDPFSPETPKMD 223 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q ++D + F++ V + R +T + G WTG ++ ++GL D G + V + Sbjct: 224 AHAQALLDQVHAQFIKAVKDGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDTVAR 283 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + D+ ++ + + L L Sbjct: 284 DVLK------APDLVDYTVKESLTNRVARKFGAAVGGAAMKALTAGGASVSL 329 >gi|21226968|ref|NP_632890.1| periplasmic serine protease [Methanosarcina mazei Go1] gi|20905282|gb|AAM30562.1| Periplasmic serine protease [Methanosarcina mazei Go1] Length = 410 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 71/285 (24%), Positives = 128/285 (44%), Gaps = 17/285 (5%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQI-----------EDSQ 51 + +++++ +++ + N S +A I ++G + S+ Sbjct: 107 SYLIVLLALIAVIAVSIAAIFYGLGFGGNIGSSDKIAVIYVQGTMLTGNVPAGLGYATSE 166 Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASA 110 E+ + I D++ A+++ ++S GGS A + I I+K + + PVI + ++AASA Sbjct: 167 EICQNIHSAVEDNNVRAIVLRVNSGGGSPSAAQEIAIEIEKAQKQGVPVIVSMGDLAASA 226 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 Y IS ++ I A ++ GSIGV++ + + F G++ KS K + + Sbjct: 227 AYYISAPADYIFANPSTNTGSIGVIWTFENMSGFYQNEGINYYVSKSGEFKDMGGTWRGL 286 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + +VV SY FV V+E RNI + L+DGRI+TG+ AK +GL+D G Sbjct: 287 TDEEKEYADEVVMESYEEFVTQVAEGRNISRSEVKKLADGRIYTGSRAKDLGLVDDFGNL 346 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 + LG Q K+ N + L + E Sbjct: 347 YDAIDKAAELGGVQGKPKVVYMN--RATLSSLLLGSETDNSSEGA 389 >gi|188579483|ref|YP_001922928.1| signal peptide peptidase SppA, 36K type [Methylobacterium populi BJ001] gi|179342981|gb|ACB78393.1| signal peptide peptidase SppA, 36K type [Methylobacterium populi BJ001] Length = 322 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 136/233 (58%) Query: 31 VEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 +ARI+I G I S+ + IER+ ++ +++S+SSPGG+ E ++R + Sbjct: 48 FPATENQIARISIGGFIAGSESTRKLIERVGESNAVKGVVISISSPGGTTTGSEELYRNL 107 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 + + +KP++ V AAS Y+ + A++ IVA ET+LVGSIGVLFQYP V LDK+GV Sbjct: 108 RALAAKKPIVAFVDGTAASGAYITAIAADHIVARETALVGSIGVLFQYPDVSGLLDKVGV 167 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 ++SVKSSP+KAEPS FS +P+A + +V +Y WF LV+E R + + ++DG Sbjct: 168 KVESVKSSPLKAEPSGFSPTSPEARAALSSIVLDTYGWFKGLVAERRGMDDSQLSAVADG 227 Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 R+++G ++ + L+D +GG+ + L + +KDW P Sbjct: 228 RVFSGRQSLPLKLVDELGGERQAVAWLEKERKVPANLPVKDWKPKAEGGLKLW 280 >gi|126656085|ref|ZP_01727469.1| Peptidase S49, SppA [Cyanothece sp. CCY0110] gi|126622365|gb|EAZ93071.1| Peptidase S49, SppA [Cyanothece sp. CCY0110] Length = 272 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 74/266 (27%), Positives = 137/266 (51%), Gaps = 8/266 (3%) Query: 34 NSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 S +ARI I G I + ++E ++ + AL++ + SPGG+ + I+ A++ Sbjct: 9 PSKQIARIEITGAIASETRKYVLEALKTVKE-KKFPALLLRIDSPGGTVGDSQEIYEALK 67 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 +++ + ++ ++AS G I + I+A ++ GSIGV+ + ++ LDK+GVS Sbjct: 68 RLQEKVKIVASFGNISASGGVYIGMGAQHIMANPGTITGSIGVILRGNNLERLLDKVGVS 127 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 K +KS P K + E+ + ++Q+++D+SY FV V+E RN+ D +DGR Sbjct: 128 FKVIKSGPYKDILAFDRELTEEEQHILQEMIDTSYQQFVTTVAEGRNLDVDNVKTFADGR 187 Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFCDLKNLSISS 270 I+TG +A ++G++D +G +E+ + L + D PK+ L S Sbjct: 188 IFTGQQALELGVVDRLGTEEDARRWAAELAGLNPDKAQCYDIEEPKSLLNRVLSRNQTKS 247 Query: 271 LLEDTIPLMK---QTKVQGLWAVWNP 293 L +I ++ +T Q LW ++ P Sbjct: 248 KLRTSIDWLEFELKTNGQPLW-LYRP 272 >gi|255322018|ref|ZP_05363168.1| signal peptide peptidase SppA, 36K type [Campylobacter showae RM3277] gi|255301122|gb|EET80389.1| signal peptide peptidase SppA, 36K type [Campylobacter showae RM3277] Length = 289 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 65/274 (23%), Positives = 122/274 (44%), Gaps = 2/274 (0%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63 + + I T + + + + + F N P++ +I + G I D+ E +E+IE +D Sbjct: 14 IFRFINTYFKAMLFLLIVFLIFFSGKGESVNPPNLTQINLSGAIMDAGEALEKIEAARKD 73 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 + +++ + SPGG+ + A++ ++ KPV+ S Y +N I+A Sbjct: 74 GNIKGVLLYIDSPGGALAPSVELHLAVKNLRAAKPVVAYAGGSMTSGSYYAGAGANKILA 133 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 + +GSIGV+ Q K+GVS + VK+ K + + + +Q++V+ Sbjct: 134 NPGAFIGSIGVIMQGADASELAAKIGVSQQVVKAGEYKEAGTFLRPWSKIEREQLQELVN 193 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 +SY FV V+ RN+ +K+ ++ R++ ++A K+GLID V L L Sbjct: 194 ASYEMFVSDVAADRNLDANKSKEWANARVFLASDAAKLGLIDEVSDYYSARAELEKLSGV 253 Query: 244 QSIRKIKD--WNPPKNYWFCDLKNLSISSLLEDT 275 K + + N IS+ E Sbjct: 254 AEPVWAKPSVYEKAMQKFINQGANSLISAFFEAK 287 >gi|78065699|ref|YP_368468.1| peptidase S49 [Burkholderia sp. 383] gi|77966444|gb|ABB07824.1| Peptidase S49 [Burkholderia sp. 383] Length = 330 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 17/292 (5%) Query: 7 KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 KI R+ + L ++ FS S + H A + I G+I ++ ++ ++ Sbjct: 44 KIFFRFAFLAVFVLFAFALIDFSSDSKFSSSGRHTALVTIDGEIAAGVNANADDINTALD 103 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115 DD +++ ++SPGGS ++ I++++ + KP+ V +M AS GY I+ Sbjct: 104 AAFDDDGTAGVVLRINSPGGSPVQAGMVYDEIRRLRAKYPDKPLYVVVTDMCASGGYYIA 163 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL + KLGV + S K PFS PK Sbjct: 164 SAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFYDPFSPETPKMD 223 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q ++D + F++ V + R +T + G WTG ++ ++GL D G + V + Sbjct: 224 AHAQALLDQVHAQFIKAVKDGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDTVAR 283 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + D+ ++ + + L L Sbjct: 284 DVLK------APDLVDYTVKESLTNRVARKFGAAVGGAAMKALTAGGASVSL 329 >gi|237713852|ref|ZP_04544333.1| protease IV [Bacteroides sp. D1] gi|262409239|ref|ZP_06085783.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 2_1_22] gi|294647614|ref|ZP_06725184.1| signal peptide peptidase SppA, 67K type [Bacteroides ovatus SD CC 2a] gi|294810039|ref|ZP_06768712.1| signal peptide peptidase SppA, 67K type [Bacteroides xylanisolvens SD CC 1b] gi|298482326|ref|ZP_07000513.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. D22] gi|229446008|gb|EEO51799.1| protease IV [Bacteroides sp. D1] gi|262352986|gb|EEZ02082.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 2_1_22] gi|292637046|gb|EFF55494.1| signal peptide peptidase SppA, 67K type [Bacteroides ovatus SD CC 2a] gi|294442755|gb|EFG11549.1| signal peptide peptidase SppA, 67K type [Bacteroides xylanisolvens SD CC 1b] gi|295085355|emb|CBK66878.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49 [Bacteroides xylanisolvens XB1A] gi|298271613|gb|EFI13187.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. D22] Length = 592 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 72/270 (26%), Positives = 131/270 (48%), Gaps = 13/270 (4%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 + + VA G+I D ++I + ++ D+ A+++ ++SPG Sbjct: 301 PKDKSGNIVAVYYASGEITDYPSSATSEDGIVGSKVIRDLRKLKDDNDVKAVVLRVNSPG 360 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 GSA+A E I+ A++++K +KPVI + + AAS GY ISC ++ IVA T+L GSIG+ Sbjct: 361 GSAFASEQIWHAVKELKTKKPVIVSMGDYAASGGYYISCVADTIVAEPTTLTGSIGIFGI 420 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P VK DK+G+S VK++ + N ++Q ++ Y FV +E R Sbjct: 421 IPNVKGLTDKIGLSYDVVKTNKYADFGNIMRPFNEDERSLLQMMITEGYDTFVSRCAEGR 480 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 ++ + +++GR+WTG AKK+GL+D +GG ++ A + + + ++ Sbjct: 481 HMTKEAIEKIAEGRVWTGETAKKLGLVDELGGIDKALDIAVAKAGIEG-YTVVSYPAKQD 539 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 ++ L + + + Q Sbjct: 540 FFSSLLDTKPTNYVESQLLKSKLGEFYQQF 569 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 98/264 (37%), Gaps = 26/264 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49 ++S+VTL + + + V + + G + Sbjct: 22 LFIISMVTLFGIMSASDTETIVKKNSVMMLDLNGTLVERTQEDPLGILSQLFGDESNTYG 81 Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 +++ I++ +++ + + SS G S + + I A+ K + + Sbjct: 82 LDDILSSIQKAKENENIKGIYLQASSLGTSYASLQEIRNALLDFKESGKFVIAYADSYTQ 141 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y +S A++ ++ ++ G+ + K L K+GV ++ K K+ PF Sbjct: 142 GLYYLSSAADKVLLNPKGMIEWRGIASAPLFYKDLLQKIGVEMQVFKVGTYKSAVEPFIA 201 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225 +E++P + + + S + VS SRNIP D V +D + E+ + G D Sbjct: 202 TEMSPANREQVTAFITSIWGQVTEGVSASRNIPVDSLNVYADRMLMFYPSEESVRCGFAD 261 Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249 + + +V L L + Sbjct: 262 TLIYRNDVRNYLKKLVEIDEDDNL 285 >gi|317477481|ref|ZP_07936707.1| signal peptide peptidase SppA [Bacteroides eggerthii 1_2_48FAA] gi|316906345|gb|EFV28073.1| signal peptide peptidase SppA [Bacteroides eggerthii 1_2_48FAA] Length = 588 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 129/245 (52%), Gaps = 12/245 (4%) Query: 30 HVEDNSPHVARIAIRGQI-----------EDSQELIERIERISRDDSATALIVSLSSPGG 78 + + +A G+I +S+++I + ++ D++ A+++ ++SPGG Sbjct: 298 PKDKSGNVIAVYYAYGEIDGGSSASTEEGINSEKVIRDLRKLKDDENVKAVVLRVNSPGG 357 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 SAY E I+ A++++K KPVI + + AAS GY I+C ++ IVA T+L GSIG+ Sbjct: 358 SAYGSEQIWYAVEQLKKEKPVIVSMGDYAASGGYYIACNADTIVAEPTTLTGSIGIFGMM 417 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P K +KLG++ VK++P + +N +MQ V++ Y F+ S+ R Sbjct: 418 PNAKGLTEKLGLNFDIVKTNPYADFGNLTRPMNDGEKGLMQMYVNNGYKLFLTRCSDGRG 477 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 I ++ ++ GR+WTG+ AK++GL+D +GG ++ + A + ++ + + Sbjct: 478 ISMEELDKIAQGRVWTGSTAKELGLVDELGGLDKALEIAVAKAGV-DTYTVMNYPKKEGF 536 Query: 259 WFCDL 263 + Sbjct: 537 LESLM 541 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 104/281 (37%), Gaps = 33/281 (11%) Query: 1 MEFVLKK-------IKTRYVMLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQIE-- 48 M+ LK I V+L +++ VV+ SS + V + + G + Sbjct: 1 MKDFLKFTLATVTGIIVSSVVLFFISILVVFSMVSSSESETQVRKNSVMMLDLNGTLAER 60 Query: 49 -----------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 +++ I + +++ + + +S + E I A++ Sbjct: 61 SQENPLDILMKDDYKTYGLDDVLSSIRKAKENENIKGIYIQANSLSAGYASLEEIRHALK 120 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 K I + + Y +S ++ ++ ++ G+ + K L+K+GV Sbjct: 121 DFKESGKFIVAYGDSYTQSLYYLSSIADKVMLNPQGMLEWRGLAATPMFFKDLLEKIGVE 180 Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 ++ K K+ PF +E++P + + + S + ++ESRN+ + +D Sbjct: 181 MQVFKVGTYKSAVEPFIATEMSPANREQVNVYLSSVWGQITGDIAESRNLSVEALNKEAD 240 Query: 210 G--RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + E+ K GL+D + + +V L L Sbjct: 241 RMLMFYPAEESVKNGLVDTLIYKNDVRDYLKTLVGIDKDDD 281 >gi|254523187|ref|ZP_05135242.1| signal peptide peptidase SppA, 67K type [Stenotrophomonas sp. SKA14] gi|219720778|gb|EED39303.1| signal peptide peptidase SppA, 67K type [Stenotrophomonas sp. SKA14] Length = 663 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 61/268 (22%), Positives = 118/268 (44%), Gaps = 12/268 (4%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVS 72 + + D+ P VA + G+I + + D++ A+++ Sbjct: 350 LALLDARRNPVDSRPQVAVVVAEGEISGGDLPAGRIGGESTSALLRAARDDENVKAVVLR 409 Query: 73 LSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 + SPGG +A E I R + ++ KPV+ + ++AAS GY IS ++ I A +++ GS Sbjct: 410 VDSPGGEVFASEQIRREVVALQAAGKPVVVSMGDLAASGGYWISMNADRIYADPSTITGS 469 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IG+ P LDK+GV V ++ ++P Q++Q V++ Y F Sbjct: 470 IGIFGMVPNFSRALDKIGVHTDGVGTTRFAGAFDVTRPMDPAVGQVIQTVINKGYADFTG 529 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG--VDQSIRKI 249 V+++R P + ++ GR+W+GA+AK+ GL+D GG ++ + ++ Sbjct: 530 RVADARKKPVEAVDEVARGRVWSGAQAKERGLVDAFGGLKDAVADAASRAKLGKADAYRV 589 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIP 277 + + + + S + Sbjct: 590 RYIEKAATPFAQFVSGFAGSRAGAWMLS 617 Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 76/210 (36%), Gaps = 12/210 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAAS 109 ++L+ IE D +++ L S +A + A+Q ++ + E Sbjct: 129 RDLLRVIESAKEDKKIERVVLELDKLQPSGFASLREVASALQDLRASGKQLVAYSESMGQ 188 Query: 110 AGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167 + YL++ ++ + V G+ ++ + DKLGV + K K+ P+ Sbjct: 189 SQYLLAAQADEVYLDPMGSVVLEGLGRYRQYFRTGLQDKLGVDVHLFKVGEYKSAAEPYV 248 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV--------LSDGRIWTGAEA 218 +P + + ++ + ++ ++++R + + ++ A Sbjct: 249 LDAASPASKEADLFWMNDVWQRYLADIAKARRLDPAQLAAGIDTLPEGIAAAGGDLAKFA 308 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + L+ + +EE + GV Sbjct: 309 LQQKLVTALKTREEFEDLMIERGVADDDAD 338 >gi|317154743|ref|YP_004122791.1| signal peptide peptidase SppA, 36K type [Desulfovibrio aespoeensis Aspo-2] gi|316944994|gb|ADU64045.1| signal peptide peptidase SppA, 36K type [Desulfovibrio aespoeensis Aspo-2] Length = 300 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 65/267 (24%), Positives = 131/267 (49%), Gaps = 3/267 (1%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWS---SHVEDNSPHVARIAIRGQIEDSQELIERIER 59 FV + ++ ++ T + S V + +++ G I DS E++E I Sbjct: 16 FVFGVMMILVAVVLVMGATAFFRSMGWTPHSVGMGGDRLGMVSVEGVILDSAEVVEWIRT 75 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119 + D S +++ ++SPGG+ + I++A+ + KPV+ +AAS GY S ++ Sbjct: 76 LKDDTSIKGVLLRVNSPGGAIAPSQEIYQAVSALAEVKPVVASYGTVAASGGYYASAPAH 135 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 +IVA S+ SIGV+ ++ V L+KLG+ + + + KA +P E+ P+ + + Sbjct: 136 VIVANPGSITASIGVMAEFVTVTEALEKLGIKPEVLTTGKYKAAGTPMRELTPEQREQLL 195 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 D++ + FV V+ +R +P+ + ++DGR TG +A ++GL+D++G + + + L A Sbjct: 196 DLMRDLHDQFVGDVARARKMPFARVAAVADGRGVTGRQALELGLVDMLGSESQAFDKLKA 255 Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNL 266 + + + + Sbjct: 256 MCSIEGRAVLVKGPVKEQSLLEKFVGS 282 >gi|223995779|ref|XP_002287563.1| hypothetical protein THAPSDRAFT_261589 [Thalassiosira pseudonana CCMP1335] gi|220976679|gb|EED95006.1| hypothetical protein THAPSDRAFT_261589 [Thalassiosira pseudonana CCMP1335] Length = 457 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 106/242 (43%), Gaps = 3/242 (1%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSP 76 +L + + VA + + G I S E+I + +I +D L++ ++SP Sbjct: 216 SLVLSGLGIYPNDVSQGDKVAVVTVDGGIGRSLAYEIISSLRKIRKDKDVKCLVLRVNSP 275 Query: 77 GGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 GGS + EAI ++ ++ PV+ + AAS GY IS + I A T+L GSIGV Sbjct: 276 GGSVVSSEAILEEVKALEIVSLPVVCSMANYAASGGYYISTNAERIFAQPTTLTGSIGVY 335 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 + G+ A P + + + Y +F +V++ Sbjct: 336 GIKFDASQWAKSYGIRSDYYPHGSHGATVHPLTPLTQSMKLNLDRTTLGYYDYFKSIVAK 395 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 R++ + ++ GR+WTG +AK+VGL+D +GG E + + +++ W Sbjct: 396 GRSLSPQQVESIAQGRVWTGEQAKEVGLVDAIGGLERAISYVKSAHTTTEKVQVEYWPKK 455 Query: 256 KN 257 + Sbjct: 456 SS 457 Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 84/212 (39%), Gaps = 9/212 (4%) Query: 48 EDSQELIERIERISRDDSATALIVSLS----SPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 +++EL++ I++ + D + +AL P G A+ E I A++ Sbjct: 1 MEAKELVDIIQKAADDKNISALYADFGEGMRYPVGYAHI-EDIRNAVRIFNESHRPSYAF 59 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 + Y ++ A + + + G +++ LDK GV K K Sbjct: 60 GYSFHWSEYFLASAFSHVHLQSRGSLDLFGATVNNLFLRSALDKYGVKAHVFKHGDYKTA 119 Query: 164 PSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--LVLSDGRIWTGAEAK 219 P+ F+E + ++ ++ + S + + SR + +D +SD T A+ Sbjct: 120 PNVFTEKVYSKPHLETVKSMTASLNNTIRTCIRNSRALNFDDVMWQSISDYGSLTAVNAE 179 Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 ++GL+D + + L A D + K++ Sbjct: 180 EIGLVDSTPSVDPLPSLLEANKSDDAKAKLEQ 211 >gi|282599624|ref|ZP_05971253.2| signal peptide peptidase SppA [Providencia rustigianii DSM 4541] gi|282567989|gb|EFB73524.1| signal peptide peptidase SppA [Providencia rustigianii DSM 4541] Length = 635 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 76/276 (27%), Positives = 137/276 (49%), Gaps = 14/276 (5%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLS 74 Y S + + + ++A I ++G I D + + +I +D A+++ ++ Sbjct: 334 YSSKIAETSNAAGNIAVIVVQGAIMDGPQTPGIAGGETIAAQIRDARLNDDIKAIVLRVN 393 Query: 75 SPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 SPGGS A + I + K KPV+ + MAAS GY IS ++ I+A+ ++L GSIG Sbjct: 394 SPGGSVSASDLIRNELAAAKASGKPVVVSMGGMAASGGYWISTPADYIIASPSTLTGSIG 453 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + + L+ +GV V +SP+ S ++P+ MMQ +++ Y F+ LV Sbjct: 454 IFGVINTFENSLESIGVYTDGVSTSPLAD-ISLTKGISPEFADMMQITIENGYETFIGLV 512 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 ++SRN + ++ GR+WTG +A +GL+D +G ++ L SI DW Sbjct: 513 AKSRNKTPAEIDKIAQGRVWTGQDALNIGLVDKLGDFDDAVNKAAELAKVDSIE--LDWM 570 Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 P+ + L L +S+ ++ +P + Q+ + A Sbjct: 571 QPELSFMDQLI-LELSNNVQVMMPDVLQSFLPPAVA 605 Score = 72.7 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 41/288 (14%), Positives = 101/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH--VARIAIRGQIEDSQ------- 51 + F+ + I + + + Y S + + + ++G + D Sbjct: 37 INFIRELIFNVIFFVLVFVVIGSYSLLQSEDKPEKNYFGALVVDLQGVVVDQVSSPDPFG 96 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 ++++ I + DD T +++ L + G+ I +AI Sbjct: 97 RMSRELLGTSNNLMQENSLFDIVDTIRTAADDDRITGMVLRLDNLAGADQPSIAYIGKAI 156 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ K + V + + + Y ++ ++ + A VG G Y K L+KL V Sbjct: 157 EQFKASGKPVYAVGDSYSQSQYYLASFADDVFIAPHGNVGVYGFSTNTLYYKSLLEKLKV 216 Query: 151 SIKSVKSSPMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK----- 203 S + K+ P ++P+A + +++ + +++ ++++R + Sbjct: 217 SSHVFRVGTYKSAVEPMMRDNMSPEAREANLLWLNTLWDNYLKALADNRQTKPVQIFPGA 276 Query: 204 ---TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L + + A + L+D + +E+ L K Sbjct: 277 EQLITQLRAVKGDSAQYALQQKLVDKIYTREQSEDILSKHFGWNKEDK 324 >gi|313681597|ref|YP_004059335.1| signal peptide peptidase sppa, 36k type [Sulfuricurvum kujiense DSM 16994] gi|313154457|gb|ADR33135.1| signal peptide peptidase SppA, 36K type [Sulfuricurvum kujiense DSM 16994] Length = 290 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 63/267 (23%), Positives = 124/267 (46%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64 LK I+ + LV + + SS ++ +IA+ G I D+ ++ +I+ +D Sbjct: 16 LKFIQEHFKATVLVLIVLWLIIPSSENGITPHNLQKIALSGPILDATPIVAQIDEAREND 75 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 ++ S+ SPGG+ I AI+++ KP + + AS GY N I+A Sbjct: 76 GIKGVLFSIDSPGGAVAPSVEIAYAIKRLSETKPTVVYAAGIMASGGYYSGIWGNEIIAN 135 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 S++GSIGV+ + + ++K+GV + V + K + E + + V+D Sbjct: 136 PGSMIGSIGVIMEGADISGLMEKVGVKTQVVHAGTYKQVGTFDREWSAAERAELNKVIDG 195 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 +Y FV V+ +R + ++ +D I+T +AKK GL+D +G + + + + L + Sbjct: 196 TYSMFVVDVARARKLDPLRSGEYADAHIFTALQAKKAGLVDSIGVEYDAKKRVEELSKVK 255 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSL 271 K+ + + + +++ L Sbjct: 256 DPTWNKEDPMDRFFKRFAAEGATLAHL 282 >gi|257058310|ref|YP_003136198.1| signal peptide peptidase SppA, 36K type [Cyanothece sp. PCC 8802] gi|256588476|gb|ACU99362.1| signal peptide peptidase SppA, 36K type [Cyanothece sp. PCC 8802] Length = 272 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 73/268 (27%), Positives = 133/268 (49%), Gaps = 6/268 (2%) Query: 31 VEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 +ARI I G I Q +++ + + +D AL++ + SPGG+ + I+ Sbjct: 6 KPSTRKQIARIEITGAIASETRQTVLKAL-KTVKDKKFPALLLRIDSPGGTVADSQEIYE 64 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 A+++++ ++ ++AS G I + IVA ++ GSIGV+ + ++ LDK+ Sbjct: 65 ALKELRKSVKIVASFGNISASGGVYIGVGAEYIVANPGTITGSIGVILRGNNLERLLDKV 124 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 G+S K +KS P K S E+ + ++Q+++D SY FV V++ RN+ +K + Sbjct: 125 GISFKVIKSGPYKDILSFDRELTEEEQTILQEMIDVSYQQFVTTVAQGRNLSVEKVKSFA 184 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLS 267 DGRI+TG +A ++G++D +G +E+ + L + + PK W L Sbjct: 185 DGRIFTGQQALELGVVDRLGTEEDARRWAAELAGLKPDQAQCYTIEEPKPLWNRLLSRNQ 244 Query: 268 ISSLLEDTIPLMK-QTKVQG-LWAVWNP 293 S L I +K + G L ++ P Sbjct: 245 SSKGLGTAIDWVKFELATNGQLLWLYRP 272 >gi|148359293|ref|YP_001250500.1| signal peptide peptidase [Legionella pneumophila str. Corby] gi|296107340|ref|YP_003619040.1| signal peptide peptidase [Legionella pneumophila 2300/99 Alcoy] gi|148281066|gb|ABQ55154.1| signal peptide peptidase [Legionella pneumophila str. Corby] gi|295649241|gb|ADG25088.1| signal peptide peptidase [Legionella pneumophila 2300/99 Alcoy] gi|307610447|emb|CBX00018.1| hypothetical protein LPW_17741 [Legionella pneumophila 130b] Length = 318 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 75/291 (25%), Positives = 129/291 (44%), Gaps = 23/291 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWS-------SHVEDNSPHVARIAIRGQIEDS-----QEL 53 +K + ++++ +++ + +VY S+ + + H+ I I G+I DS Sbjct: 30 RKRRWKWIIRAIILVVLVYSSYKIVSVAKTTEASKDKEHIGLIDINGEIADSSSASADNF 89 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASA 110 + IE+ + ALIV ++SPGGS E I+ + + +K +M ASA Sbjct: 90 TKGIEKAYKSKGLKALIVRINSPGGSPVQAEYIYNVLQYYKSLKPNIKTYAVCVDMCASA 149 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 Y ++ ++ I A+ S+VGSIGVL+ L KLG+S + S KA PFS Sbjct: 150 AYYVAVGADEIYASPASMVGSIGVLYNGFGFVDALQKLGISRRLQTSGVNKAFLDPFSPT 209 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + +Q ++D + F+ V E R G WTG +A GLID Sbjct: 210 TEFQKEKLQTMLDIVHKQFITRVKEGRGNRLHVDDETFSGLFWTGEQALANGLIDGYASS 269 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 ++ + + I I D+ +N + KNL + + D +P++ Sbjct: 270 GQLAREVIK------ITDIVDYTYKQNVFDRLTKNLGTA--MADELPVILG 312 >gi|147918877|ref|YP_687397.1| putative protease IV [uncultured methanogenic archaeon RC-I] gi|110622793|emb|CAJ38071.1| putative protease IV [uncultured methanogenic archaeon RC-I] Length = 299 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 75/274 (27%), Positives = 132/274 (48%), Gaps = 19/274 (6%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN------SPHVARIAIRG-QIED------ 49 F+L + V+++ V L +V+ S VA + I G I D Sbjct: 23 FILGILAIVTVLIAGVGLYLVFGSGIKGDLKEMLGLDHDNKVAVVYIEGKMIADKSNDPT 82 Query: 50 ------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 S E++ I + + DDS A+++ ++SPGG+ A E I I + K +KPVI + Sbjct: 83 DDGAAFSSEVVRAIRKATADDSIKAIVLRVNSPGGTPVAAEEIIAQINRTKAKKPVIVSM 142 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 + A SA Y +S +++ I A + GSIGV++ + + ++ G++ KS K Sbjct: 143 GDSATSAAYYVSASADKIFANPDTFTGSIGVIWVFKNKTRYYNEEGINFYIAKSGNYKDV 202 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 + + ++ +Q +++ SY FV V+ RN+P ++ ++DGR+ TG AK +GL Sbjct: 203 GADWRGLSENEKSYIQSIINESYERFVTAVATGRNLPENQIRAIADGRVMTGTSAKSMGL 262 Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 +D +GG + + LG + I N P + Sbjct: 263 VDEIGGLYDAIEYAAKLGGIKGEPVIVHMNEPGS 296 >gi|313206075|ref|YP_004045252.1| signal peptide peptidase sppa, 67k type [Riemerella anatipestifer DSM 15868] gi|312445391|gb|ADQ81746.1| signal peptide peptidase SppA, 67K type [Riemerella anatipestifer DSM 15868] gi|315023746|gb|EFT36749.1| putative protease IV [Riemerella anatipestifer RA-YM] Length = 584 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 69/256 (26%), Positives = 121/256 (47%), Gaps = 9/256 (3%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDSQE--------LIERIERISRDDSATALIVSLSS 75 Y +S +A + G I + E IE I + DD A+++ ++S Sbjct: 290 YIKSIKDESKSSEKIAVLYASGNIINGDEATNISDEKYIEYIRDLKDDDDIKAVVLRINS 349 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 PGGSA A + I +Q++K +KP+I + AAS GY I+ A + I + ++ GSIGV Sbjct: 350 PGGSANASDQILFELQQLKLKKPLIVSFGDYAASGGYYIAMAGDKIYSEPNTITGSIGVF 409 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 P K +K G+ V ++ SP S + M+Q+ V+ +Y FV V++ Sbjct: 410 GMIPDFKNLANKNGIRSDVVSTNTNSQMMSPISGITEGTKNMLQNSVEQTYKRFVYFVTK 469 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 +RN +++ ++ GR+W+G +AK++GL+D +G + ++ I + Sbjct: 470 NRNKTFEQVDEIAGGRVWSGKKAKELGLVDELGSLNDAITFAIKKAKVKN-YNIVSYPSE 528 Query: 256 KNYWFCDLKNLSISSL 271 N K + S+ Sbjct: 529 INPLEEFFKGMDEESI 544 Score = 84.7 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 81/208 (38%), Gaps = 3/208 (1%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 + I IE+ DD+ + + + E+I AI+ K + + Sbjct: 82 DFIRAIEKAKTDDNIKGISIENDNINAGITQIESIRNAIEDFKKSGKFVYSYGNSVSQPS 141 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SE 169 Y + ++ + G+ + ++K F ++ G+ I ++ KA PF ++ Sbjct: 142 YFLGSVADKFYLNPAGGIELKGMASEVIFLKDFAEQYGIGINIIRHGKYKAAVEPFLRND 201 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGAEAKKVGLIDVVG 228 ++P+ + + ++ ++ ++ SR I + ++DG + K GL+D + Sbjct: 202 ISPENKEQLSTLLSDLWNRVSNKIASSRKISIENFQSITDGLYGMIPDFSLKYGLVDKLM 261 Query: 229 GQEEVWQSLYALGVDQSIRKIKDWNPPK 256 + E L + +K+ + K Sbjct: 262 QKGEYELLLKQKIGIDTDKKLNKVSIRK 289 >gi|167764531|ref|ZP_02436652.1| hypothetical protein BACSTE_02920 [Bacteroides stercoris ATCC 43183] gi|167697200|gb|EDS13779.1| hypothetical protein BACSTE_02920 [Bacteroides stercoris ATCC 43183] Length = 540 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 69/245 (28%), Positives = 128/245 (52%), Gaps = 12/245 (4%) Query: 30 HVEDNSPHVARIAIRGQI-----------EDSQELIERIERISRDDSATALIVSLSSPGG 78 + + +A G+I +S+++I+ + ++ +++ A+++ ++SPGG Sbjct: 250 PRDKSGNVIAVYYAYGEIDGGSSASTDEGINSEKVIKDLRKLKDNENVKAVVLRVNSPGG 309 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 SAY E I+ A+ ++K KPVI + + AAS GY ISC ++ IVA T+L GSIG+ Sbjct: 310 SAYGSEQIWYAVNQLKKEKPVIVSMGDYAASGGYYISCNADTIVAEPTTLTGSIGIFGMM 369 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P K +KLGV+ VK++P + +N +MQ V++ Y F+ S+ R Sbjct: 370 PNAKGLTEKLGVNFDVVKTNPYADFGNLTRPMNDGEKGLMQMYVNNGYELFLTRCSDGRG 429 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 I ++ ++ GR+WTG+ AK++GL+D +GG ++ + A + + + + Sbjct: 430 ISMEELDKIAQGRVWTGSTAKELGLVDELGGLDKALEIAIAKAGV-DAYTVMSYPKKEGF 488 Query: 259 WFCDL 263 + Sbjct: 489 LESLM 493 Score = 98.9 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 81/203 (39%), Gaps = 4/203 (1%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 +++ I++ ++ + + +S G + E I A++ K + + Sbjct: 30 GLDDILSSIKKAKENEDIKGIYIQATSLGAGFASLEEIRNALKDFKESGKFVVAYGDAYT 89 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167 Y +S ++ ++ ++ G+ + K L+K+GV ++ K K+ PF Sbjct: 90 QGLYYLSSVADKVLLNPQGMLEWRGLAATPMFFKDLLEKVGVEMQVFKVGTYKSAVEPFI 149 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLI 224 +E++ + + + S + V+ESRN+ + +D + E+ K GL+ Sbjct: 150 STEMSAANREQINVYLSSIWGQITSAVAESRNLSVEALNKEADRMLMFYPAEESVKNGLV 209 Query: 225 DVVGGQEEVWQSLYALGVDQSIR 247 D + + +V L L Sbjct: 210 DTLIYKNDVRDYLKNLAGIDKDD 232 >gi|157964584|ref|YP_001499408.1| Signal peptide peptidase SppA, 36K type [Rickettsia massiliae MTU5] gi|157844360|gb|ABV84861.1| Signal peptide peptidase SppA, 36K type [Rickettsia massiliae MTU5] Length = 305 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 77/298 (25%), Positives = 153/298 (51%), Gaps = 15/298 (5%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSW-----------SSHVEDNSPHVARIAIRGQIEDSQEL 53 ++IK+R ++ L + ++ + + N ++A + I I + ++ Sbjct: 12 RRQIKSRLLIWKLAAIILIAIVFLLVGKDFAPKEVLPINSNEDYIASVLIDEIILEDEKR 71 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 +++++I D ALIV+++SPGG+ E I+ ++K+ +KPV+ + MAAS GYL Sbjct: 72 DKKLKKIIDDSHIKALIVNVNSPGGTVVGSEKIYNILRKISAKKPVVIVMGTMAASGGYL 131 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 IS + I++ ++ GSIGV+ Q V KLG+ + KS +KA P+P ++ Sbjct: 132 ISLGGDYIISHNGTITGSIGVILQTAEVTELAQKLGIKFNNFKSGELKAVPNPTEKLTEA 191 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 + + ++ +Y++F+ LVSE RN+P ++ L+DGR+++G +A K+ L+D +G ++ Sbjct: 192 VRVTIMENIEDTYNFFLELVSERRNLPIEEVKKLADGRVYSGRQALKLKLVDAIGSEDTA 251 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 + L + +KD+ D+ S++ P + G+ A++ Sbjct: 252 LKWLQEVQKINVNLLVKDYQLKPKPKLMDIILEDFDSIV----PSFFKNSFNGIKAIF 305 >gi|88798805|ref|ZP_01114388.1| signal peptide peptidase SppA, 36K type [Reinekea sp. MED297] gi|88778568|gb|EAR09760.1| signal peptide peptidase SppA, 36K type [Reinekea sp. MED297] Length = 327 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 68/275 (24%), Positives = 114/275 (41%), Gaps = 15/275 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 + KI T + L+ + S + + H A I + G I + ++ + Sbjct: 44 IFFKILTFTYLFVLLGYVMFNTSATQDIGPTGGHTAVIDVSGVIAQGNLAGADSVVASLR 103 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLIS 115 R A+I+ ++SPGGS I+ I +++ + I + AS Y I+ Sbjct: 104 RAVEHSDTRAVILRINSPGGSPVQSAYIYNEINRLRQKYEDIPIYSVIVDSGASGAYYIA 163 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A+ I A SLVGSIGV + ++K+G+ + S KA PF EV+P+ Sbjct: 164 SATQEIYANGASLVGSIGVTAAGFGFQDLIEKVGIERRQFTSGEHKAFLDPFMEVDPEEQ 223 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 + + V++ + F+R V R L G WTG++A +GL+D + E Sbjct: 224 ALFEAVLNDVHEQFIRDVQAGRGDRLADNDDLFSGLFWTGSQALDLGLVDGLKSTSE--- 280 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270 L D K D+ + +NL +S Sbjct: 281 ----LARDIGYPKTVDFTYHPSPLEQFARNLGVSM 311 >gi|45358632|ref|NP_988189.1| basic helix-loop-helix dimerization domain-containing protein [Methanococcus maripaludis S2] gi|45047498|emb|CAF30625.1| Basic helix-loop-helix dimerization domain bHLH:Peptidase U7:Signal peptide peptidase, SppA 36 kDa type [Methanococcus maripaludis S2] Length = 308 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 74/279 (26%), Positives = 148/279 (53%), Gaps = 21/279 (7%) Query: 5 LKKI----KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE------------ 48 +KKI +++++++ + ++ F S + +S ++A I I G I Sbjct: 1 MKKIYYYSIAVFLIIAILMVGLLVFVSSDGI--SSKNIALINIDGTITLESSDSGLFSSI 58 Query: 49 --DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 + +E ++ +D+ A+I+ ++SPGG A A E + R I++V +KPV+ + M Sbjct: 59 QPGVNDYVEWLDDAENNDNIKAVIIKINSPGGGAVASEKLSRKIKEVSEKKPVVAYIENM 118 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 ASA Y + ++N IVA ++VGSIGV + + ++KLG++ S+ K +P Sbjct: 119 GASAAYQAASSTNYIVAERQAVVGSIGVRMELIHYYGLMEKLGINTTSITGGKYKDIGTP 178 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 + + M++ +V+ SY+ FV V+E+RN+ ++TL ++DG+I++G +A++VGL+D+ Sbjct: 179 TRSMTEEEYAMLESMVNESYYEFVSWVAENRNMTINETLEVADGKIYSGTQAQRVGLVDI 238 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 G +++ LG + I ++ + + Sbjct: 239 TGTEDDAVDMAVKLGNITN-PDIYEYGKTSSANLFGMTF 276 >gi|332525765|ref|ZP_08401912.1| peptidase S49 [Rubrivivax benzoatilyticus JA2] gi|332109322|gb|EGJ10245.1| peptidase S49 [Rubrivivax benzoatilyticus JA2] Length = 331 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 71/286 (24%), Positives = 125/286 (43%), Gaps = 16/286 (5%) Query: 7 KIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQIEDSQE-----LIERIER 59 ++ R++ L+L + + PH A + +RG+I E L+ + Sbjct: 50 RLFFRFIWLALAVALAWGLMSERFTPTAPSRPHTALVEVRGEIAPGSEASAELLVSALRS 109 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCA 117 D A A+++ ++SPGGS + I+++K ++K V V EM AS Y I+ A Sbjct: 110 AFEDQGAQAVVLRINSPGGSPVQAGIVNDEIRRLKVLHQKKVYAVVEEMCASGAYYIAVA 169 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 ++ I + SLVGSIGVL +DKLG+ + + + K P+S N + Sbjct: 170 ADEIYVDKASLVGSIGVLMDGFGFTGLMDKLGIERRLLTAGENKGMLDPYSPQNEQQTAY 229 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 + ++D + F+ +V + R +T G W G EA ++GL D +G + V + + Sbjct: 230 AKAMIDQIHQQFIAVVRQGRGKRLQETPETFSGLFWNGEEAVRLGLADKMGNLDYVAREV 289 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 + D+ P +N K + E + M+Q Sbjct: 290 VK------AEDVVDYTPRENVAERLAKRFGAAMG-EGAVKAMRQVS 328 >gi|158425341|ref|YP_001526633.1| peptidase S49 protein [Azorhizobium caulinodans ORS 571] gi|158332230|dbj|BAF89715.1| peptidase S49 protein [Azorhizobium caulinodans ORS 571] Length = 323 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 86/273 (31%), Positives = 146/273 (53%), Gaps = 14/273 (5%) Query: 33 DNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 +SPHVAR+ I G I + ++ ++ +E I R +A A+IVS+ SPGG+ E ++ A+++ Sbjct: 47 ASSPHVARVVIGGIIRNDRDRVKMLEEIGR-SNARAVIVSIDSPGGTVTGAEQLYDALRQ 105 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 + +KPV+ V MAAS GY+ + S+ IV+ ++VGSIGV+FQ+P V L K+GV++ Sbjct: 106 LAAKKPVVAVVEGMAASGGYIAAIGSDHIVSRRNAMVGSIGVIFQFPNVTDLLGKIGVTV 165 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 + +KSSP+KA P+ + +P+A + +V SY WF LVSE R + + +SDGR+ Sbjct: 166 EDIKSSPLKAAPNGYQPTSPEARAAINSLVVDSYGWFKGLVSERRKLSDARLAEVSDGRV 225 Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK-------- 264 +TG + + L+D +G + L +++ W Sbjct: 226 FTGHQGLALQLVDELGDERTARAWLAREKGVPENLRVRTWKSESMGSEFGWLRGAAGALA 285 Query: 265 -----NLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + L + T ++ ++ GL A+W Sbjct: 286 SALGFDTVAGILSQATQAAFEKAQLDGLLALWQ 318 >gi|67459158|ref|YP_246782.1| Signal peptide peptidase SppA [Rickettsia felis URRWXCal2] gi|67004691|gb|AAY61617.1| Signal peptide peptidase SppA [Rickettsia felis URRWXCal2] Length = 304 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 77/298 (25%), Positives = 153/298 (51%), Gaps = 15/298 (5%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSW-----------SSHVEDNSPHVARIAIRGQIEDSQEL 53 ++IK+R ++ L + ++ + + N ++A + I I + ++ Sbjct: 11 RRQIKSRLLIWKLAAIILIAIVFLLVGKDFAPKEVLPINSNEDYIASVLIDEIILEDEKR 70 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 +++++I D ALIV+++SPGG+ E I+ ++K+ +KPV+ + MAAS GYL Sbjct: 71 DKKLKKIIDDSHIKALIVNVNSPGGTVVGSEKIYNILRKISEKKPVVIVMGTMAASGGYL 130 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 IS + I++ ++ GSIGV+ Q V KLG+ + KS +KA P+P ++ Sbjct: 131 ISLGGDYIISHNGTITGSIGVILQTAEVTELAQKLGIKFNNFKSGELKAVPNPTEKLTEA 190 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 + + ++ +Y++F+ LVSE RN+P ++ L+DGR+++G +A K+ L+D +G ++ Sbjct: 191 VRVAIMENIEDTYNFFLELVSERRNLPIEEVKKLADGRVYSGRQALKLKLVDAIGSEDTA 250 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 + L + + +KD+ D+ S+ P + G+ A++ Sbjct: 251 LKWLQEVKKINANLLVKDYQLKPKPKLIDIILEDFDSIA----PSFFKNSFNGIKAIF 304 >gi|291276786|ref|YP_003516558.1| protease [Helicobacter mustelae 12198] gi|290963980|emb|CBG39819.1| protease [Helicobacter mustelae 12198] Length = 286 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 66/251 (26%), Positives = 126/251 (50%), Gaps = 3/251 (1%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 F+ K K +L +V L +F + + ++A+I + G I DS + E+I++I Sbjct: 14 FITKYFKACIFLLIIVLL---FFFLHNDGGQKNANLAKIYLHGPIIDSTSIYEQIKKIKA 70 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 + + ++ ++SPGG+ A I I+++ R PV+ V + AS Y S I Sbjct: 71 NPNIKGALLLINSPGGAVSASVEISDMIRELNQRIPVVAYVQGVMASGSYYGGMYSKQIF 130 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +L+GSIGV+F ++ + K+GVS + V + K +P + P+ +++++ Sbjct: 131 ANRGALIGSIGVIFSSMNIQNLMQKIGVSQQGVSAGAYKEVGTPLRKWTPEEYAYIKNLI 190 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 Y F+ VS++R + ++G+I+T A+K+GLID +GG ++ ++L Sbjct: 191 QEEYQMFIDDVSDARKLDKHNYKSFAEGKIFTAKNAQKLGLIDEIGGMDDAIEALKNFSH 250 Query: 243 DQSIRKIKDWN 253 Q ++ Sbjct: 251 VQDPIWLEKSK 261 >gi|268589452|ref|ZP_06123673.1| signal peptide peptidase SppA [Providencia rettgeri DSM 1131] gi|291315117|gb|EFE55570.1| signal peptide peptidase SppA [Providencia rettgeri DSM 1131] Length = 618 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 70/282 (24%), Positives = 132/282 (46%), Gaps = 14/282 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 +++ + + S ++A I ++G I D + +I DD+ A Sbjct: 311 ISIYDYSTKIADTNANQSGNIAVIVVQGAIMDGPQTAGIAGGDTIAAQIRDARLDDNIKA 370 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQ-KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ ++SPGGS A + I + KPV+ + MAAS GY +S ++ I+A+ + Sbjct: 371 IVLRVNSPGGSVSASDLIRSELASAHAAGKPVVVSMGGMAASGGYWVSTPADYIIASPNT 430 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + LD +GV V +SP+ S ++P+ MMQ +++ Y Sbjct: 431 LTGSIGIFGVINTFEKSLDSIGVYTDGVSTSPLAD-ISLTKGISPQFADMMQITIENGYE 489 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F+ LV++SR+ + ++ GR+W G +A K GL+D +G + L ++ Sbjct: 490 TFIGLVAKSRHKTPAEIDQIAQGRVWIGQDALKNGLVDQLGDFDNAVDKAAELAKLTDVK 549 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 DW P+ + L L +++ ++ +P + + A Sbjct: 550 --LDWMKPELTFMDQLL-LELTTNVQAAMPDVLHVFLPPAVA 588 Score = 92.8 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 99/288 (34%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH--VARIAIRGQIEDSQ------- 51 + F+ + + ++ + + + + + + ++G I D Sbjct: 19 LNFIREFVFNAIFLVLFFVVIGSIALYQTETQPEKNYFGALYVDLQGVIVDQVSTPDPFG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 ++++ I + DD T +++ L G+ I +AI Sbjct: 79 RMSRELLGTSNSRMQENSLFDIVDTIRTAANDDRITGMVLRLDDLAGADQPSLAYIGKAI 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 + K+ + + + Y ++ ++ I VG G Y K L+KL V Sbjct: 139 NEFKSSGKQVYAIGNSYNQSQYYLASYADEIYLTPQGAVGVYGFATNGLYYKSLLEKLKV 198 Query: 151 SIKSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ P E++P+A + +D+ ++ ++ ++++RN + Sbjct: 199 SSHIFRVGTYKSAVEPLMRDEMSPEARLANKQWLDALWNNYLTEIAKNRNTTSTQIFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L + + A K L+D + E+V L K Sbjct: 259 DAILEKLRSVKGDSAQYALKQKLVDKLYTNEQVEDLLSKHFGWNKEDK 306 >gi|237640201|ref|YP_002891056.1| peptidase S49 family protein [Escherichia coli] gi|237809921|ref|YP_002894360.1| peptidase S49 family protein [Escherichia coli] gi|237810110|ref|YP_002894549.1| peptidase S49 family protein [Salmonella enterica] gi|229561420|gb|ACQ77623.1| peptidase S49 family protein [Escherichia coli] gi|229561594|gb|ACQ77796.1| peptidase S49 family protein [Salmonella enterica] gi|229561776|gb|ACQ77977.1| peptidase S49 family protein [Escherichia coli] gi|332144543|dbj|BAK19763.1| peptidase S49 family protein [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 302 Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 68/284 (23%), Positives = 125/284 (44%), Gaps = 16/284 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSS----HVEDNSPHVARIAIRGQIE-----DSQELI 54 +L+ ++ +L ++ ++ + + +PH A I IRG+I D+ LI Sbjct: 17 MLRVLRASGFVLLMIGFIILASNPGGMPWQSAKAGAPHTAYINIRGEIAAGTLADADHLI 76 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAG 111 I+ + ++ A+++ ++SPGGS I+ + + + K V + ++ AS G Sbjct: 77 PSIQAAFDNPNSQAIVLRINSPGGSPVQAGRIYDEVKAQRALHPEKKVYAIIDDIGASGG 136 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I A SLVGSIGV+ +DKLG+ +++ S KA PFS + Sbjct: 137 YYIASAADEIYADRASLVGSIGVISSGFGFTGLMDKLGIERRAITSGEHKALLDPFSPLT 196 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + + V+ ++ F+ V R + G +W G +AK +GLID +G Sbjct: 197 SDMKKFWEGVLSKTHQQFIERVKAGRGDRLKDDPEVFSGLLWNGEQAKDIGLIDGLGSLN 256 Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 V + + +D L SS +++ Sbjct: 257 SVARDVIHQSNLVDYTPTEDIIRR----LTQRAKLEASSFVQEL 296 >gi|322832766|ref|YP_004212793.1| signal peptide peptidase SppA, 67K type [Rahnella sp. Y9602] gi|321167967|gb|ADW73666.1| signal peptide peptidase SppA, 67K type [Rahnella sp. Y9602] Length = 617 Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 74/279 (26%), Positives = 129/279 (46%), Gaps = 14/279 (5%) Query: 21 TVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIV 71 ++ +S ++N P +A I G I D +E ++I D A+++ Sbjct: 310 SIYDYSPKPKPDNNDPQIAVIFATGAINDGEEQPGAVGGDTTAQQIRDARLDPKVKAIVL 369 Query: 72 SLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 ++SPGGS A E I + K KPV+ + MAAS GY IS +N I+A+ ++L G Sbjct: 370 RVNSPGGSVSASEVIRSELAAAKAAGKPVVVSMGGMAASGGYWISTPANYIIASPSTLTG 429 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIG+ + LD GV V +SP+ + + P+ QMMQ +++ Y F+ Sbjct: 430 SIGIFGVINTYQNTLDYAGVHTDGVATSPLAD-IASTKALPPEFSQMMQLNIENGYKTFL 488 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 LV++SR+ ++ ++ G +W G++AK GL+D +G ++ + L Sbjct: 489 GLVADSRHKTPEQIDQIAQGHVWIGSDAKANGLVDELGDFDDAVKKAAELAKLPK--WQL 546 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 +W DL +S+ + +P Q + + Sbjct: 547 NW-YVSEPSLSDLVFSQVSASVHAMLPAAIQAYLPAPVS 584 Score = 98.9 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 106/302 (35%), Gaps = 44/302 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + FV + I +++L ++ ++++ + + + + G + D Sbjct: 19 LNFVREFILNVFLILIILAGVGIWYAVQDKPVETTQGALLVDLSGSVVDKPSVNNKVRQW 78 Query: 52 ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92 +L+E I D + T +++ L+ G+ + + I +A+++ Sbjct: 79 GRELLGTSSSRLQENSLFDLVETIRSAKDDKNVTGIVLQLTDFTGTDQSSLQYIGKALRE 138 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 ++ + + + + Y ++ +N I + V G Y K LDKL V+ Sbjct: 139 FRDAGKPVYAIGDSYNQSQYYLASYANKIYLSPQGAVDLHGFATNNLYYKSLLDKLKVTT 198 Query: 153 KSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203 + K+ P +++P A + + + ++ VS +R I ++ Sbjct: 199 NIFRVGTYKSAVEPLIRDDMSPDAREADSRWIGGLWTNYLNTVSANRQITPEQLFPGAAG 258 Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPK 256 + A K L+D + + E + D + I D++P Sbjct: 259 VLAGMQATGGDMAQYALKAKLVDALASRTEADNEMVKAFGWNKDTKDFNYTSIYDYSPKP 318 Query: 257 NY 258 Sbjct: 319 KP 320 >gi|113475281|ref|YP_721342.1| signal peptide peptidase A [Trichodesmium erythraeum IMS101] gi|110166329|gb|ABG50869.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49 [Trichodesmium erythraeum IMS101] Length = 608 Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 125/248 (50%), Gaps = 9/248 (3%) Query: 29 SHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGS 79 S ++ +A + +G++ L +++ ++ D+ A+++ ++SPGGS Sbjct: 313 SKNIKSNNKIAVVYAQGEVVNGSGTSRQIGGDRLAKKLRQLRLDEKVKAVVLRVNSPGGS 372 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A A E I R ++ + KPVI + +AAS GY IS ++ IVA ++ GSIGV Sbjct: 373 ASASEVISREVKLMSEEKPVIVSMGNIAASGGYWISMNADRIVAEVNTITGSIGVFGVLF 432 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 ++ ++ G++ VK + + ++Q +VDS Y F++ V+ +RN+ Sbjct: 433 NIQEIANQNGITWDVVKIGKFADLNTTSRPKTEDELVLIQKMVDSIYERFIKNVATARNL 492 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 +K ++ GR+W+GA A+K+GL+D +GG E + KI+++ ++ Sbjct: 493 APEKVEEIAQGRVWSGANAQKLGLVDEIGGIETAIKVAAEKAELGDSWKIEEYPKSRSLE 552 Query: 260 FCDLKNLS 267 ++LS Sbjct: 553 QQIFRSLS 560 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 97/274 (35%), Gaps = 34/274 (12%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVEDNSPH-----VARIAIRGQIEDSQEL---------- 53 T + + L S +S +D P + + I DS+ + Sbjct: 19 ITLIIGVGFGGLIFFVVSIASQTKDLGPQVEDKSILVFDLATSITDSRPISSTGEALQEA 78 Query: 54 --------------IERIERISRDDSATALIVSLSSPGG--SAYAGEAIFRAIQKVKNRK 97 I + ++D + + S+ G + I +A+Q+ + Sbjct: 79 LSSDQATTITLRKAINTLNAAAKDKKIIGIYIKGSNAPGVTGLANLQEIRQALQRFRETG 138 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I Y +S ++ I ++ G+ + ++ LDK G+ ++ K Sbjct: 139 KTIIAYDMDWTEREYYLSSVADEIAINPLGVLEFNGLSSETMFLSGALDKFGIGVQVTKV 198 Query: 158 SPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWT 214 K+ PF +++P+ Q ++ + +++ V+ SR ++ ++D I Sbjct: 199 GKYKSATEPFLREKMSPENRQQTLQLLQDIWGQYLQTVATSRKSTTEQLQAIADNQGILM 258 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 A + L+D V +EV + L L + K Sbjct: 259 ANNALQSKLVDRVVYYDEVLKKLKELTGIEEDDK 292 >gi|254828180|ref|ZP_05232867.1| peptidase [Listeria monocytogenes FSL N3-165] gi|258600567|gb|EEW13892.1| peptidase [Listeria monocytogenes FSL N3-165] Length = 337 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 72/280 (25%), Positives = 134/280 (47%), Gaps = 19/280 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76 E + +A +++ G I+D+ + ++++ER+ DD+ +++ ++SP Sbjct: 56 EEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLERVRNDDNIQGVLLYVNSP 115 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG I I +++ + P + MAAS GY IS ++ I A++ +L GS+GV Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPTDKIFASKETLTGSLGV 175 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + Q + KLGVS ++KS K S + ++MQ ++D SY+ FV++V+ Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + R + ++ ++DGRI+ G +AK+ GLID G QE+ ++L I+ P Sbjct: 236 QGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALEALKKEQGLAGATVIQYNAP 295 Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291 + IS + + I L K + ++ Sbjct: 296 GDFSSLFSVTAQKISGQNADISQLIKLTGTLKAPRMMYLY 335 >gi|226224186|ref|YP_002758293.1| protease [Listeria monocytogenes Clip81459] gi|254931525|ref|ZP_05264884.1| peptidase [Listeria monocytogenes HPB2262] gi|225876648|emb|CAS05357.1| Putative protease [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293583079|gb|EFF95111.1| peptidase [Listeria monocytogenes HPB2262] gi|332312027|gb|EGJ25122.1| Putative signal peptide peptidase sppA [Listeria monocytogenes str. Scott A] Length = 337 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 133/280 (47%), Gaps = 19/280 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76 E + +A +++ G I+D+ + ++++E++ DD +++ ++SP Sbjct: 56 EEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLEQVRNDDYIQGVLLYVNSP 115 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG I I +++ + P + MAAS GY IS ++ I A++ +L GS+GV Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + Q + KLGVS ++KS K S + ++MQ ++D SY+ FV++V+ Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + R + ++ ++DGRI+ G +AK+ GLID G QE+ ++L I+ P Sbjct: 236 QGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALEALKKEQGLADATVIQYDTP 295 Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291 + IS + + I L K + ++ Sbjct: 296 ENFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYLY 335 >gi|120609865|ref|YP_969543.1| peptidase S49 [Acidovorax citrulli AAC00-1] gi|120588329|gb|ABM31769.1| peptidase S49 [Acidovorax citrulli AAC00-1] Length = 350 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 65/279 (23%), Positives = 121/279 (43%), Gaps = 7/279 (2%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISRD 63 + +++ + V+ + ++PH A + I+G+I E ++ + D Sbjct: 72 RMAWLVFLVAVAWVLLARDVAAPSKSTPHTAVVDIKGEIASGAEASAEFVVAAMRSAFED 131 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNII 121 + A+++ ++SPGGS I I ++K + KPV V E ASA Y I+ ++ I Sbjct: 132 SGSQAVVLLINSPGGSPVQAGIINDEILRLKAKYNKPVYAVVEETCASAAYYIAAGADQI 191 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 + S+VGSIGVL ++KLGV + + + K PFS ++ K Q + Sbjct: 192 FVDKASIVGSIGVLMDGFGFTGTMEKLGVERRLLTAGENKGFLDPFSPMSEKQRTYAQAM 251 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 +D + F+++V + R T G WTG +A +GL D +G + V + + Sbjct: 252 LDQIHQQFIQVVQKGRGDRLKPTADTFSGLFWTGQQAVDMGLADHLGNLDYVAREVVKAE 311 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 + + F + L ++P ++ Sbjct: 312 DIIDYTRRDNVAERLVKKFGAAMGETAIRALGASLPAVR 350 >gi|326316008|ref|YP_004233680.1| peptidase S49 [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372844|gb|ADX45113.1| peptidase S49 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 350 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 65/279 (23%), Positives = 120/279 (43%), Gaps = 7/279 (2%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISRD 63 + +++ + V+ + ++PH A + I+G+I E ++ + D Sbjct: 72 RMAWLVFLVAVAWVLLARDVAAPSKSTPHTAVVDIKGEIASGAEASAEFVVAAMRSAFED 131 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNII 121 + A+++ ++SPGGS I I ++K + KPV V E ASA Y I+ ++ I Sbjct: 132 SGSQAVVLLINSPGGSPVQAGIINDEIIRLKAKYNKPVYAVVEETCASAAYYIAAGADQI 191 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 + S+VGSIGVL ++KLGV + + + K PFS ++ K Q + Sbjct: 192 FVDKASIVGSIGVLMDGFGFTGTMEKLGVERRLLTAGENKGFLDPFSPMSEKQRTYAQAM 251 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 +D + F+ +V + R T G WTG +A +GL D +G + V + + Sbjct: 252 LDQIHQQFIHVVQKGRGDRLKPTADTFSGLFWTGQQAVDMGLADHLGNLDYVAREVVKAE 311 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 + + F + L ++P ++ Sbjct: 312 DIIDYTRRDNVAERLVKKFGAAMGETAIRALGASLPAVR 350 >gi|198275373|ref|ZP_03207904.1| hypothetical protein BACPLE_01534 [Bacteroides plebeius DSM 17135] gi|198271709|gb|EDY95979.1| hypothetical protein BACPLE_01534 [Bacteroides plebeius DSM 17135] Length = 586 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 82/271 (30%), Positives = 136/271 (50%), Gaps = 12/271 (4%) Query: 27 WSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPG 77 ++ VA G+I +S+++ + + + +D + A+++ ++SPG Sbjct: 295 SATPKSKTRDVVAVYYAYGEIDNGSSYDEGINSEKVTKDLRDLRKDKNVKAVVLRVNSPG 354 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 GSAY E I+R + +K KPV+ + + AAS GY ISCA+N IVA T+L GSIG+ Sbjct: 355 GSAYGSEQIWREVTLLKAEKPVVVSMGDYAASGGYYISCAANKIVAEPTTLTGSIGIFGM 414 Query: 138 YPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 P L +KLG+ VK+ M S N + +MQ +V+ Y F + +E Sbjct: 415 MPDASELLTNKLGLHFDGVKTHKMADMGSMSRPFNAEESALMQQMVNQGYALFTKRCAEG 474 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 RNIP ++ +++GR+WTG+ AK++ L+D +GG + Q LG + K+K + P K Sbjct: 475 RNIPLEELCKIAEGRVWTGSMAKELKLVDELGGLDTAIQLAAELGKVKD-YKLKSY-PAK 532 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + +L N + + QG Sbjct: 533 QDFLTELLNTRADRYIHGQLQETFGEYYQGF 563 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 105/263 (39%), Gaps = 23/263 (8%) Query: 10 TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DS 50 +++L + L + S S V + ++G ++ Sbjct: 20 FIFIILGVTMLAGIVASSESETLVMPNSVFTLELKGTVQERYQPSPVDQFFEDQISTYGL 79 Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 ++++ I++ ++ + + + S + +AI RA+ K + +M Sbjct: 80 EDILNSIQKAKENEQIKGIYLHTGALACSTASLQAIHRALTDFKQSGKFLIAYADMYTQG 139 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168 GY ++ ++ ++ + G+ + ++K FL K+GV ++ + K+ P + Sbjct: 140 GYYLASVADKVIVNPVGSLSWHGLASETMFLKDFLVKIGVKMQIFRVGTYKSAVEPMTNT 199 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD--GRIWTGAEAKKVGLIDV 226 E++P + Q ++S++ V V+ SRNI D +L+D + + GL D Sbjct: 200 EMSPANREQTQAFLESTWKSIVDDVAASRNISVDSLNLLADKNMDLRPAEDYVHCGLADT 259 Query: 227 VGGQEEVWQSLYALGVDQSIRKI 249 + ++EV L +L + Sbjct: 260 LMYKDEVLSYLKSLAGLTEEDDL 282 >gi|71065346|ref|YP_264073.1| signal peptide peptidase [Psychrobacter arcticus 273-4] gi|71038331|gb|AAZ18639.1| probable signal peptide peptidase [Psychrobacter arcticus 273-4] Length = 351 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 67/292 (22%), Positives = 130/292 (44%), Gaps = 15/292 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHV----EDNSPHVARIAIRGQIEDSQ-----ELI 54 K + Y++L +T+ + + + N PH+A + I+G I ++ Sbjct: 56 FFKLLTFGYILLIFLTIGRSCSTEAPTALDGIDTNKPHLAVVEIQGTISSGDVANAYDVN 115 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA---IQKVKNRKPVITEVHEMAASAG 111 + + R + ++ A+ + ++SPGGS + I++ ++K K + + +M AS Sbjct: 116 DALTRAFENSNSKAVALDINSPGGSPVQSDEIWQTMMDLRKQYPDKKLYAVIGDMGASGA 175 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I +SLVGSIGV+ VK +DK+GV +++ + K S + Sbjct: 176 YYIASAADEIYVNPSSLVGSIGVIMPSYNVKGLMDKVGVEDRTITAGEYKDILSLSRPLT 235 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGG 229 Q ++ V+D+++ F+ V E R + L G WTG ++ ++GL D G Sbjct: 236 DYEEQHVEKVLDNTHKHFINAVKEGRGDRLKNPEQNKLFSGLFWTGEQSIELGLADKKGS 295 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 + + L L + + + + L SS+ D +P + Sbjct: 296 ISSLEKQL-KLNNVVNYTPSDPFQLFMDRFAVKLGAGVGSSINLDLLPQEEG 346 >gi|262198128|ref|YP_003269337.1| signal peptide peptidase SppA, 36K type [Haliangium ochraceum DSM 14365] gi|262081475|gb|ACY17444.1| signal peptide peptidase SppA, 36K type [Haliangium ochraceum DSM 14365] Length = 875 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 67/286 (23%), Positives = 117/286 (40%), Gaps = 16/286 (5%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE---------------D 49 L+ + R L + P VA IA+ G I Sbjct: 547 LEDVGARVFADVGAILPLAAAPRERPEAWAQPAVAVIALEGDIVAGPSAGLPLLGRRVAG 606 Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 S+ L++ I + A+++ + SPGGSA A I R + K + KP++ + AAS Sbjct: 607 SETLVQAIAWARHNPRIQAIVLRIDSPGGSAVASALIAREVFKTRGVKPIVCSLGNAAAS 666 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 GY + + I A T++ GSIGV + L +LGVS + + + S Sbjct: 667 GGYYAAAGCDQIFAEATTITGSIGVFSGKFDISGLLTRLGVSWQLYERGAHASMNSMLRP 726 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 + ++++ + SY F+ V+ RN+ D+ + GR+WTG +AK VGL+D +GG Sbjct: 727 FTTEERALLENQLRDSYERFIDTVASGRNMTPDQVDEIGRGRVWTGQQAKAVGLVDDIGG 786 Query: 230 QEEVWQSLYALGVDQSIRKIKD-WNPPKNYWFCDLKNLSISSLLED 274 + + ++++ W P + + + Sbjct: 787 LLDALSAAKHRAGLLPEQRVELVWLPEEPRGLARWLMQQVGASAGG 832 Score = 68.9 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 77/193 (39%), Gaps = 7/193 (3%) Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 ++ ++RDDS + V ++ P E + A+ +++ + + Y I+ Sbjct: 368 QLRLLARDDSVAGVFVQIADPVEGWAQAEELRGALGELRRAGKKVYAYLVSGSMRDYFIA 427 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDK--LGVSIKSVKSSPMKAEPSPFSEVNPK 173 ++ I + +G+ Y+ L++ + + ++ E + Sbjct: 428 TGADKIYLDPAGGLDFVGLSATSLYLGEALERAGVAAEFEKIEEYKSAPETFTQDGPSEA 487 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVG----LIDVVGG 229 A++M ++ DS + V ++E+R + D L D +T A + G L+D V Sbjct: 488 ALRMRNELYDSVFAELVTRIAEARKLDADTVEALIDEGPYTAE-ALQRGTAALLVDEVVT 546 Query: 230 QEEVWQSLYALGV 242 E+V ++A Sbjct: 547 LEDVGARVFADVG 559 >gi|218442231|ref|YP_002380560.1| signal peptide peptidase SppA, 36K type [Cyanothece sp. PCC 7424] gi|218174959|gb|ACK73692.1| signal peptide peptidase SppA, 36K type [Cyanothece sp. PCC 7424] Length = 274 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 76/270 (28%), Positives = 144/270 (53%), Gaps = 10/270 (3%) Query: 32 EDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 S +ARI I G I +++++ ++++ + AL++ + SPGG+ + I++A Sbjct: 7 PKASKQIARIEITGVIASETRKQVLKALDKVEQ-KKYRALLLRIDSPGGTVGDSQEIYQA 65 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 ++++ ++ ++ ++AS G I + IVA ++ GSIGV+ + ++ LDK+G Sbjct: 66 LRRLHDKVKIVASFGNISASGGVYIGMGAQHIVANPGTITGSIGVIIRGNNLERLLDKIG 125 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 +S K VKS P K S E+ + ++Q+++D SY FV+ V++SRN+P + +D Sbjct: 126 ISFKVVKSGPYKDILSFDRELTSEEQGILQEMIDISYQQFVQTVAQSRNLPLETVKTFAD 185 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR----KIKDWNPPKNYWFCDLKN 265 GRI+TG +A ++G+ID +G +E+ + L L + I++ P N ++ Sbjct: 186 GRIFTGEQALELGVIDRLGTEEDARRWLAELVGLAPDKTKCQTIEEPKPLLNRILGGRRS 245 Query: 266 LSISSLLEDT--IPLMKQTKVQGLWAVWNP 293 + SSL + T Q LW ++ P Sbjct: 246 QTKSSLGAALNWVEFELATNNQPLW-LYRP 274 >gi|170720705|ref|YP_001748393.1| signal peptide peptidase SppA, 36K type [Pseudomonas putida W619] gi|169758708|gb|ACA72024.1| signal peptide peptidase SppA, 36K type [Pseudomonas putida W619] Length = 341 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 65/294 (22%), Positives = 133/294 (45%), Gaps = 18/294 (6%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIE 58 + K+ T + ++ L + + ++ H A + +RG I D + L++ + Sbjct: 55 IFFKLLTFVYLFGVLALFLPWTDMDKAASRSASHTALVEVRGVIADQEAASADNLVKSLR 114 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT---EVHEMAASAGYLIS 115 +D A+++ ++SPGGS ++ I++++ P I + ++ AS Y I+ Sbjct: 115 EAFKDPKTKAVVMRINSPGGSPVQAGYVYDEIRRLRGEYPDIKLYAVIADLGASGAYYIA 174 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I A + SLVGSIGV ++KLGV ++ + KA PFS P+ Sbjct: 175 SAADEIYADKASLVGSIGVTAAGYGFVGSMEKLGVERRTYTAGEHKAFLDPFSPEKPEER 234 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 Q V+++++ F+ +V + R L G +W+G +AK +GL+D +G V Sbjct: 235 AFWQGVLNTTHQQFIAMVKQGRGDRLKDKEHPELFSGLVWSGEQAKALGLVDGLGSASYV 294 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + + + D+ ++ + K + S + + + + + L Sbjct: 295 AREIVG------EKDLVDFTVEESPFDRFSKRIGAS--VAEKLAMYMGFQGPAL 340 >gi|83718579|ref|YP_442246.1| peptidase, U7 family protein [Burkholderia thailandensis E264] gi|257138439|ref|ZP_05586701.1| peptidase, U7 family protein [Burkholderia thailandensis E264] gi|83652404|gb|ABC36467.1| peptidase, U7 family protein [Burkholderia thailandensis E264] Length = 333 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 64/274 (23%), Positives = 123/274 (44%), Gaps = 17/274 (6%) Query: 7 KIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 +I R+ L+++ F S + H A + I G+I +++++ ++ Sbjct: 48 RIFFRFAFLAVLGALAFAFLSVSGDGSKLASGRHTAVVTIDGEIAASTNANAEDINTALD 107 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115 D +++ ++SPGGS ++ I++++ + KP+ V +M AS GY I+ Sbjct: 108 SAFEDSGTVGVVLKINSPGGSPVQAGIVYDEIRRLRKKYPAKPLYVVVSDMCASGGYYIA 167 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL +DKLGV + S K PFS PK Sbjct: 168 AAADKIYVDKASIVGSIGVLMDGFGFTGLMDKLGVERRLHTSGENKGFFDPFSPETPKMD 227 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q+++D + F++ V + R ++ + G WTGA++ ++GL D G + V + Sbjct: 228 AHAQEMLDEIHAQFIKAVKDGRGARLHESPDIFSGLFWTGAKSIELGLADDYGTTDSVAR 287 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 + + D+ ++ + + Sbjct: 288 DVLK------APDLVDYTVKESLTDRVARRFGAA 315 >gi|218245277|ref|YP_002370648.1| signal peptide peptidase SppA, 36K type [Cyanothece sp. PCC 8801] gi|218165755|gb|ACK64492.1| signal peptide peptidase SppA, 36K type [Cyanothece sp. PCC 8801] Length = 272 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 73/268 (27%), Positives = 133/268 (49%), Gaps = 6/268 (2%) Query: 31 VEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 +ARI I G I Q +++ + + +D AL++ + SPGG+ + I+ Sbjct: 6 KPSTRKQIARIEITGAIASETRQTVLKAL-KTVKDKKFPALLLRIDSPGGTVADSQEIYE 64 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 A+++++ ++ ++AS G I + IVA ++ GSIGV+ + ++ LDK+ Sbjct: 65 ALKELRKSVKIVASFGNISASGGVYIGVGAEYIVANPGTITGSIGVILRGNNLERLLDKV 124 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 G+S K +KS P K S E+ + ++Q+++D SY FV V++ RN+ +K + Sbjct: 125 GISFKVIKSGPYKDILSFDRELTQEEQTILQEMIDVSYQQFVTTVAQGRNLSVEKVKSFA 184 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLS 267 DGRI+TG +A ++G++D +G +E+ + L + + PK W L Sbjct: 185 DGRIFTGQQALELGVVDRLGTEEDARRWAAELAGLKPDQAQCYTIEEPKPLWNRLLSRNQ 244 Query: 268 ISSLLEDTIPLMK-QTKVQG-LWAVWNP 293 S L I +K + G L ++ P Sbjct: 245 SSKGLGTAIDWVKFELATNGQLLWLYRP 272 >gi|114706455|ref|ZP_01439357.1| protease IV [Fulvimarina pelagi HTCC2506] gi|114538316|gb|EAU41438.1| protease IV [Fulvimarina pelagi HTCC2506] Length = 312 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 88/268 (32%), Positives = 158/268 (58%), Gaps = 6/268 (2%) Query: 32 EDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 +AR++I G I + ++++E ++++ ++ A++V ++SPGG+ GEA++ A++ Sbjct: 43 PTGGDQIARVSIEGMITEDRKMLELLDKLKTEEEVLAVVVRINSPGGTTVGGEALYEAVR 102 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 ++ KPV EV +AASAGY+++ A++ IVA TS+VGSIGVLFQY LDK+GV Sbjct: 103 EIAEVKPVAAEVGTLAASAGYMVAAATDHIVARRTSIVGSIGVLFQYADASVLLDKIGVE 162 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + + KSSP+KAEPSPF P+A++M+ +++ +Y WF +V E R + + + D Sbjct: 163 VDARKSSPIKAEPSPFGPAPPEALEMIDELIMDTYAWFRDIVGERRGLSRSELAAVDDAS 222 Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP-----PKNYWFCDLKNL 266 +++G + + L+D +GG+E + Q L + + P P ++ + L Sbjct: 223 VFSGRQGVERKLVDAIGGEEIIRQWLEDDRDIPKGLEFVEREPEDEDTPLSFLTESIAAL 282 Query: 267 SISSLLEDTIPL-MKQTKVQGLWAVWNP 293 S L +IP+ ++ ++ GL ++W P Sbjct: 283 GTSFGLSQSIPISVRSLELDGLVSLWQP 310 >gi|313892633|ref|ZP_07826220.1| signal peptide peptidase SppA, 36K type [Dialister microaerophilus UPII 345-E] gi|313119030|gb|EFR42235.1| signal peptide peptidase SppA, 36K type [Dialister microaerophilus UPII 345-E] Length = 316 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 79/300 (26%), Positives = 141/300 (47%), Gaps = 26/300 (8%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHV-----EDNSPHVARIAIRGQI-------------- 47 KI +++ + V+ F V ++N+ +VA + I G I Sbjct: 8 KITLAVIIVLFILAIVINFVGMKDVSSFANKNNNKYVAVVRIDGPIYGGDVNQNMLGGVS 67 Query: 48 -EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHE 105 S++++ + +RD +A A+++ ++SPGG+ A + I I KV+N KPVI + + Sbjct: 68 GSSSEDIMYELREATRDPNAKAVLLRINSPGGTTGATQEIAEEIDKVRNSGKPVIVSMGD 127 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 ASAGY ++ + I A+ ++ GSIGV Y V +DKLGV + +KS K S Sbjct: 128 TCASAGYWLASKGDYIFASPATITGSIGVYMDYTNVSELMDKLGVKNEKIKSGTHKDILS 187 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 + + + ++Q +VD Y+ FV+ +++ R++ K ++DGRI TG +A+ GL+D Sbjct: 188 MYRPITDEEKTILQKMVDDIYNQFVQTIADGRHLEEAKVREIADGRILTGKQAQAYGLVD 247 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 +G + S D P ++Y +S+ + +T V Sbjct: 248 AMGNYYDALTYAGNRVGINS-----DVIPTRSYSKGMTLRGLLSAEMNNTAQNFASRIVD 302 >gi|15615760|ref|NP_244064.1| proteinase IV [Bacillus halodurans C-125] gi|14548271|sp|Q9K809|SPPA_BACHD RecName: Full=Putative signal peptide peptidase sppA gi|10175821|dbj|BAB06917.1| proteinase IV [Bacillus halodurans C-125] Length = 331 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 70/283 (24%), Positives = 132/283 (46%), Gaps = 22/283 (7%) Query: 29 SHVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLS 74 D +A + + G I+D+ ++ ++++E+ D + +I+ ++ Sbjct: 49 ETGTDFGKSIAILELSGVIQDTGSAPSLLNTGVYHHRDFLKQLEKAGEDPNIAGIILQVN 108 Query: 75 SPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 +PGG I + ++++ + KPV + MAAS GY IS + I A ++ GSI Sbjct: 109 TPGGGVLESAEIHKQVEEIVQDSEKPVYVSMGNMAASGGYYISAPATKIYAHPQTITGSI 168 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GV+ Q + + LG+ + KS P K S EV + ++Q +VD Y FVR+ Sbjct: 169 GVIMQSIDISGLAENLGIEFNTFKSGPYKDILSQTREVTDEEEDILQTLVDEMYDEFVRV 228 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 + + R + + L+DGRI+TG++A GL+D +GG ++V +S+ + + + Sbjct: 229 IVDGRGMSETEVRELADGRIYTGSQAVATGLVDELGGLDDVIESMKEDLG--ADYNVIRY 286 Query: 253 NPPKNYWFCDLKN----LSISSLLEDTIPLMKQTKVQGLWAVW 291 + + LS S L+ L+ Q+ L ++ Sbjct: 287 EHSLGLYDFFSMSTNRLLSPSYELQSIERLLNQSNTPTLQYLY 329 >gi|330997115|ref|ZP_08320968.1| signal peptide peptidase SppA [Paraprevotella xylaniphila YIT 11841] gi|329570910|gb|EGG52617.1| signal peptide peptidase SppA [Paraprevotella xylaniphila YIT 11841] Length = 587 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 80/279 (28%), Positives = 127/279 (45%), Gaps = 14/279 (5%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIED-----SQELIER------IERISRDDSATALIVS 72 + + +A G I D S+ +I+ + + D+S A+++ Sbjct: 290 LAAATETTPKKGDKIAVYYAYGDIVDRKTEWSENVIDAETVCHDLRTLREDESVKAVVLR 349 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 ++S GGSAYA E I+ ++ ++ KPV+ + MAAS GY ISCA+N IVA T+L GSI Sbjct: 350 INSGGGSAYASEQIWHEVKLLRKAKPVVVSMGGMAASGGYYISCAANYIVAEPTTLTGSI 409 Query: 133 GVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 G+ P L DKLG+ VK++ +P NP QMMQ + Y F Sbjct: 410 GIFGLIPDASQLLSDKLGLHFDVVKTNAHADFGTPARPFNPSEAQMMQGYIQRGYKLFTE 469 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 V+E RN+ + L++GR+WTG +A + GL D G + + +L + + Sbjct: 470 RVAEGRNMETSQVEKLAEGRVWTGQQAVENGLADANGNLQTAIKKAASLAKIKDYHT--E 527 Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + P W+ L + L + T L + Sbjct: 528 YAPTPAPWYEGLFDQQKKDYLNTALQETLGTYYAPLMNL 566 Score = 88.5 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 91/259 (35%), Gaps = 24/259 (9%) Query: 11 RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------------Q 51 L ++++ + S+ V R+ + G++++ + Sbjct: 21 ALFTLGILSIAGMMTMESTAPSIKPQSVLRLTLNGELQEDAPNDPLGDLFGSTYPTLSLR 80 Query: 52 ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 E+ I+ + + + + + G + I ++ K I + Sbjct: 81 EIQTAIQGAKENPNIDGIYIEAQTLLGATPAMIRDIRESLADFKKSGKYIIAYGDNYTQG 140 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168 Y I ++ I+ V G+ Q + K L+K+G+ ++ K K+ PF + Sbjct: 141 AYYICSIADSIILNPQGQVNWCGMASQPIFYKDLLEKIGIKMQVFKVGSYKSAVEPFTAT 200 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLIDV 226 +++ + + ++ + + VS SR+I D +D E + G++D Sbjct: 201 QMSDANREQVTSYLNDIWQTMLTDVSRSRSIKKDLLDEYADSMLTFRPAEELVRNGMVDS 260 Query: 227 VGGQEEVWQSLYALGVDQS 245 + + + + L A Sbjct: 261 LCYIDGISRMLRAKTGKDK 279 >gi|209517241|ref|ZP_03266086.1| peptidase S49 [Burkholderia sp. H160] gi|209502377|gb|EEA02388.1| peptidase S49 [Burkholderia sp. H160] Length = 333 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 68/289 (23%), Positives = 125/289 (43%), Gaps = 16/289 (5%) Query: 7 KIKTRYVMLSLVTLTV--VYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIER 59 +I R+V L+++ L V V V H A +++ G+I +++++ ++ Sbjct: 49 RIFFRFVFLAVLALAVWGVLNFSGERVATTGRHTAMVSLNGEIATDTSANAEDINTALDS 108 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISC 116 D +I+ +SPGGS I I++++ + P I V +M AS GY + Sbjct: 109 AFEDSDTAGVILYCNSPGGSPVQAGIINSEIRRLRGKYPSIPLYVVVGDMCASGGYYAAA 168 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 A+ I + S+VGSIGVL +DKLG+ + + K PFS PK Sbjct: 169 AAEKIYVDKASIVGSIGVLMDSFGFTGLMDKLGIQRRLHTAGENKGFFDPFSPETPKMDT 228 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 + QD++D + F+ V + R +T + G WTG ++ ++GL D +G + V + Sbjct: 229 IAQDMLDQIHAQFIDAVRQGRGKRLHETPDMFSGLFWTGQKSVELGLADGLGDADYVARE 288 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ I D+ ++ + + + K+ Sbjct: 289 IFK------APDIVDYTVKESITDRVARKFGAAVGAGAVRAMALGEKLN 331 >gi|300771388|ref|ZP_07081264.1| signal peptide peptidase SppA [Sphingobacterium spiritivorum ATCC 33861] gi|300762058|gb|EFK58878.1| signal peptide peptidase SppA [Sphingobacterium spiritivorum ATCC 33861] Length = 589 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 70/258 (27%), Positives = 124/258 (48%), Gaps = 12/258 (4%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSAT 67 T++++ + +S + VA + G I S ++ + ++ DD Sbjct: 287 FSTVSILDYRANSTTSEGEGRVAVLYAEGDIVSGEGESGQIASDKVSRELRKLREDDRVK 346 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 A++ ++SPGGSA A + I+R + K KP+I + + AAS GY IS A++ I A + + Sbjct: 347 AVVFRVNSPGGSALASDVIWREVVLTKKVKPIIVSMGDYAASGGYYISAAADSIFAEKNT 406 Query: 128 LVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPS-PFSEVNPKAVQMMQDVVDSS 185 + GSIGV P K L DKLG+ VK+ S P + + ++Q V+ + Sbjct: 407 ITGSIGVFGLIPNFKGLLNDKLGIHFDGVKTGTYADLMSSPDRPLTAEERNIIQLEVNKT 466 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y F + V+E R + + GR+WTG +A ++GL+D +G + +S + + Sbjct: 467 YGSFTKKVAEGRKLSVANVDSIGQGRVWTGEQAVEIGLVDRIGSIGDAIRSAAKMAKLKD 526 Query: 246 IRKIKDWNPPKNYWFCDL 263 K+ + K+ + L Sbjct: 527 -YKVVKYPSLKDPFSSIL 543 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 98/270 (36%), Gaps = 25/270 (9%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------------- 47 V+ I V+ ++ + S + V I + +I Sbjct: 16 VIATIILFIVIAGIIGSLISSASTDAAPVVADNSVLYITLNHEIKERSETNPLEGVDIPG 75 Query: 48 ------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 +++ERI+ D + +++S + I A+ K K I Sbjct: 76 FGTTKTLGLDDILERIQSAKSDSKIKGIYLNISGANTGFATLQEIRDALIDFKASKKFIV 135 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 E Y ++ ++ I + G+ ++K LDKLGV ++ VK K Sbjct: 136 SYSEGYTQKAYYLASVADKIYLNPEGSLDFRGLSTSIMFMKDALDKLGVDMQVVKVGTYK 195 Query: 162 AEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEA 218 + PF ++ ++ + S Y F+ VS SR +P D ++D + +A Sbjct: 196 SAVEPFMLNGMSQPNRLQVESYLGSLYTTFLDNVSASRKVPVDSLRAIADRYAVRDAEDA 255 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 ++ L+D V ++E+ + + +K Sbjct: 256 VRLKLVDAVLYKDELIDEVKKRLNIKDKKK 285 >gi|20092840|ref|NP_618915.1| proteinase IV [Methanosarcina acetivorans C2A] gi|19918143|gb|AAM07395.1| proteinase IV [Methanosarcina acetivorans C2A] Length = 394 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 69/264 (26%), Positives = 125/264 (47%), Gaps = 15/264 (5%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWS---SHVEDNSPHVARIAIRGQI-----------EDS 50 +++++ +++ + S +A I ++G + S Sbjct: 91 RSYFLVLLALIAVIAVSMAAIFYGLGFGGDFGTSEKIAVIYVQGSMLTGNVPSGLGYATS 150 Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAAS 109 +E+ E I D++ A+++ ++SPGGS A + I I+K + + PV+ + ++AAS Sbjct: 151 EEISENIHSAVADENVKAIVLRINSPGGSPAAAQEISIEIEKAQEKGIPVVVSMGDLAAS 210 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A Y IS ++ I A ++ GSIGV++ + + + ++ GV KS K S + Sbjct: 211 AAYYISAPADYIYANPSTSTGSIGVIWTFENMSSYYEREGVEYYISKSGEFKDMGSSWRG 270 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 + + + VV SY FV V+E RN+ + L+DGRI+TG +AK++GL+D G Sbjct: 271 LTDEEKEYADSVVMESYDDFVGQVAEGRNMSRSEVKELADGRIYTGTKAKELGLVDGFGN 330 Query: 230 QEEVWQSLYALGVDQSIRKIKDWN 253 + LG Q K+ N Sbjct: 331 LYDAIDKAAELGSIQGEPKVVYMN 354 >gi|54294636|ref|YP_127051.1| hypothetical protein lpl1713 [Legionella pneumophila str. Lens] gi|53754468|emb|CAH15952.1| hypothetical protein lpl1713 [Legionella pneumophila str. Lens] Length = 318 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 76/291 (26%), Positives = 129/291 (44%), Gaps = 23/291 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWS-------SHVEDNSPHVARIAIRGQIEDS-----QEL 53 +K + ++++ +++ + +VY S+ + + H+ I I G+I DS Sbjct: 30 RKRRWKWIIRAIILVVLVYSSYKIVSVAKTTEASKDKEHIGLIDINGEIADSSSASADNF 89 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASA 110 + IE+ R ALIV ++SPGGS E I+ + + +K +M ASA Sbjct: 90 TKGIEKAYRSKGLKALIVRINSPGGSPVQAEYIYNVLQYYKSLKPNIKTYAVCVDMCASA 149 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 Y ++ ++ I A+ S+VGSIGVL+ L KLG+S + S KA PFS Sbjct: 150 AYYVAVGADEIYASPASMVGSIGVLYNGFGFVDALQKLGISRRLQTSGVNKAFLDPFSPT 209 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + +Q ++D + F+ V E R G WTG +A GLID Sbjct: 210 TEFQKEKLQTMLDIVHKQFITRVKEGRGNRLHVDDETFSGLFWTGEQALANGLIDGYASS 269 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 ++ + + I I D+ +N + KNL + + D +P++ Sbjct: 270 GQLAREVIK------ITDIVDYTYKQNVFDRLTKNLGTA--MADELPVILG 312 >gi|300311214|ref|YP_003775306.1| periplasmic serine protease [Herbaspirillum seropedicae SmR1] gi|300073999|gb|ADJ63398.1| periplasmic serine protease (ClpP class) protein [Herbaspirillum seropedicae SmR1] Length = 343 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 66/289 (22%), Positives = 128/289 (44%), Gaps = 15/289 (5%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERIS 61 + + + ++ + + + E PH A + I+G I+ + +I +++ Sbjct: 61 FFRIALLAVVVLGVWMAFTFNRIENEPLGPHTALVEIKGAIDSEGQGSAGVVIPALDKAF 120 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCAS 118 + + +I+ ++SPGGS I I ++ +KP+ V E+ AS GY I+ A+ Sbjct: 121 AANDSVGVILKINSPGGSPVQAGMINDEITRLRKQYPKKPIYVVVEEVCASGGYYIAAAA 180 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I + SLVGS+GVL +DKLGV + + + K+ PFS +PK + Sbjct: 181 DKIFVNKASLVGSVGVLMDGFGFTGLMDKLGVERRLLTAGENKSFLDPFSPQSPKQREYA 240 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 Q ++ + F+ +V + R +T G +WTG++A ++GL D G + V + Sbjct: 241 QSMLQEIHQQFIEVVRQGRGARLKETPDTFSGLVWTGSKAVELGLADGFGTVDSVARD-- 298 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + D+ +N LK ++ + + + L Sbjct: 299 ----EIKAEDVVDYTQTENLSERVLKKFGVA-FGAGFAKTVMSSSLPQL 342 >gi|167581132|ref|ZP_02374006.1| peptidase, U7 family protein [Burkholderia thailandensis TXDOH] Length = 305 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 64/274 (23%), Positives = 123/274 (44%), Gaps = 17/274 (6%) Query: 7 KIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 +I R+ L+++ F S + H A + I G+I +++++ ++ Sbjct: 20 RIFFRFAFLAVLGALAFAFLSVSGDGSKLASGRHTAVVTIDGEIAASTNANAEDINTALD 79 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115 D +++ ++SPGGS ++ I++++ + KP+ V +M AS GY I+ Sbjct: 80 SAFEDSGTVGVVLKINSPGGSPVQAGIVYDEIRRLRKKYPAKPLYVVVSDMCASGGYYIA 139 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL +DKLGV + S K PFS PK Sbjct: 140 AAADKIYVDKASIVGSIGVLMDGFGFTGLMDKLGVERRLHTSGENKGFFDPFSPETPKMD 199 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q+++D + F++ V + R ++ + G WTGA++ ++GL D G + V + Sbjct: 200 AHAQEMLDEIHAQFIKAVKDGRGARLHESPDIFSGLFWTGAKSIELGLADDYGTTDSVAR 259 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 + + D+ ++ + + Sbjct: 260 DVLK------APDLVDYTVKESLTDRVARRFGAA 287 >gi|117924863|ref|YP_865480.1| signal peptide peptidase SppA, 36K type [Magnetococcus sp. MC-1] gi|117608619|gb|ABK44074.1| signal peptide peptidase SppA, 36K type [Magnetococcus sp. MC-1] Length = 350 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 63/280 (22%), Positives = 135/280 (48%), Gaps = 19/280 (6%) Query: 6 KKIKTRYVMLSLVTLTVVY----FSWSSHVEDNSPHVARIAIRGQIE-----DSQELIER 56 K + +++L LV + F S + PHVA + + G I D+ E+I+ Sbjct: 63 KNLFRLFIVLYLVATMALLNRGDFEEGSSASASEPHVAVVKMVGAIMPESDLDADEVIKN 122 Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV---HEMAASAGYL 113 ++ +D++ A+++ ++SPGGS I+ I +++ I ++ AS GY Sbjct: 123 LQEAFKDENTKAVVLRINSPGGSPVQAGMIYDEIVRLRAEHKEIKVYAALEDLCASGGYY 182 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 ++ A++ I A + +LVGSIGV+ + ++ +++G+ +++ + KA P + V+ Sbjct: 183 VAAAADEIYADKATLVGSIGVIMKGFGLEKLAEQVGLENRTLTAGNHKAFLDPLAPVDSA 242 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 Q +++ + F+ +V + R L +G IWTG +A +GL+D +G + Sbjct: 243 EKAHAQGLLNQIHAQFIEVVKKGRGKRLKADDDKLFNGLIWTGEQAVTLGLVDGLGSVDW 302 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 + + I ++ +++ +++ K +S S+ Sbjct: 303 LAREKIK------ITEVMEYHQNRHWSDRFFKEISSSTGT 336 >gi|255691166|ref|ZP_05414841.1| signal peptide peptidase SppA, 67K type [Bacteroides finegoldii DSM 17565] gi|260623069|gb|EEX45940.1| signal peptide peptidase SppA, 67K type [Bacteroides finegoldii DSM 17565] Length = 592 Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 74/262 (28%), Positives = 131/262 (50%), Gaps = 14/262 (5%) Query: 15 LSLVTLT-VVYFSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERIS 61 LSL+ L ++ + + + +A G+I D ++I + ++ Sbjct: 285 LSLLGLGDMINVRKNVPKDKSGNIIAVYYASGEITDYPGSATSEEGIVGSKVIRDLRKLK 344 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 +D A+++ ++SPGGSA+A E I+ A++++K +KPVI + + AAS GY ISC ++ I Sbjct: 345 DNDDVKAVVLRVNSPGGSAFASEQIWYAVKELKTKKPVIVSMGDYAASGGYYISCGADTI 404 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 VA T+L GSIG+ P VK DK+G+S VK++ + + ++Q + Sbjct: 405 VAEPTTLTGSIGIFGMVPNVKELTDKIGLSYDVVKTNKYADFGNIMRPFSEGEKALLQMM 464 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 V Y F+ +E R+ + +++GR+WTG AK++GL+D +GG ++ A Sbjct: 465 VAEGYDTFITRCAEGRHTTKEAIEKIAEGRVWTGEAAKELGLVDELGGIDKALDIAVAKA 524 Query: 242 VDQSIRKIKDWNPPKNYWFCDL 263 I + K+ L Sbjct: 525 RVGG-YTIVSYPEKKDVLSSLL 545 Score = 107 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 44/264 (16%), Positives = 96/264 (36%), Gaps = 26/264 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49 ++ +VTL + + + V + + G + Sbjct: 22 LFIIGMVTLFGIMAASDTETIVKKNSVMILDLNGTLVERTQEDPLGILSQLFNDDSNTYG 81 Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 +++ I++ ++ + + +S G S + + I A+ K + + Sbjct: 82 LDDILSSIKKAKENEDIKGIYLQANSLGTSYASLQEIRNALLDFKESGKFVIAYADSYTQ 141 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y +S A++ ++ ++ G+ + K L K+GV ++ K K+ PF Sbjct: 142 GLYYLSSAADKVLLNPKGMIEWRGIASTPLFYKDLLQKIGVEMQIFKVGTYKSAVEPFIA 201 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225 +E++P + + + S + VS SRNIP D +D + E+ + GL D Sbjct: 202 TEMSPANREQVTTFISSIWSQVTEGVSASRNIPVDSLKAYADRMLMFYPAEESVRCGLAD 261 Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249 + + +V L L + Sbjct: 262 TLVYRNDVRDYLKRLVDIDEDDNL 285 >gi|222111810|ref|YP_002554074.1| peptidase s49 [Acidovorax ebreus TPSY] gi|221731254|gb|ACM34074.1| peptidase S49 [Acidovorax ebreus TPSY] Length = 347 Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 65/290 (22%), Positives = 122/290 (42%), Gaps = 14/290 (4%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIER 59 + +V+L+ + + ++PH A + ++G+I ++ ++ + Sbjct: 64 RNFWRLAWVLLAGAVIWAALSREMTATSKSTPHTAVVDVKGEIAAGAEASAEFVVAAMRS 123 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCA 117 D + A+++ ++SPGGS I I ++K + KPV V E ASA Y I+ A Sbjct: 124 AFEDSGSQAVVLLINSPGGSPVQAGIINDEIVRLKAKYNKPVYAVVEETCASAAYYIAAA 183 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 ++ I + S+VGSIGVL ++KLGV + + + K PFS Sbjct: 184 ADGIFVDKASIVGSIGVLMDGFGFTGAMEKLGVERRLLTAGENKGFLDPFSPQTETQRAY 243 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 Q ++D + F+ +V + R T G WTG +A ++GL D +G + V + + Sbjct: 244 AQAMLDQIHQQFIGVVKQGRGDRLKVTPETFSGLFWTGQQAVEMGLADQLGNLDYVAREV 303 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + D+ N K + + + + ++ L Sbjct: 304 VK------AEDVIDYTRRDNVAERLAKKFGAAVGMG-AVKGLAALQLPQL 346 >gi|21674462|ref|NP_662527.1| protease IV [Chlorobium tepidum TLS] gi|21647650|gb|AAM72869.1| protease IV [Chlorobium tepidum TLS] Length = 597 Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 60/282 (21%), Positives = 119/282 (42%), Gaps = 14/282 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATAL 69 + + + +A I I G I + E ++ D A+ Sbjct: 285 LGATGGMRPQGGGDRIAVINITGMIVSDGAGGMSEGDGTDVATVKEALQTAIDDLKVKAI 344 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 ++ + SPGG A A + + + K +KP++ + +AAS GY+++ A + I A ++ Sbjct: 345 VLRIDSPGGDALAASTMLELLNEAKAKKPIVASMSGLAASGGYMVALAGDKIFAEPLTIT 404 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV P + L+K G+ + + +PF + + + ++ + Y F Sbjct: 405 GSIGVFSLKPDLSSLLEKTGIRREVLIRGRFADAETPFRAFDDASFRKFVELTGTVYEDF 464 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI-RK 248 + V++ R++ + ++ GR+W+G A +VGLID +GG + Q L + + Sbjct: 465 IAKVAKGRHMTPAQVDAVAGGRVWSGKRALEVGLIDQIGGLGDAVQEAKKLAGVKKEVKP 524 Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + P + W L S ++ M + + L + Sbjct: 525 ALLYLPAQKTWLEYLLGSDTSDMVSALTAAMVRESLGQLQPL 566 Score = 75.0 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 85/205 (41%), Gaps = 3/205 (1%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 +EL+ ++R D ++++ + G S + + +I ++ +T Sbjct: 75 SFEELLTILDRAKTDRRVDSVLLRIDGLGASPAKIQELRSSIAALRKSGKKVTAFLVTPE 134 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSP 166 Y ++ A + I+ + S + G+ + +V L KLGVS ++ + K+ E Sbjct: 135 DKDYQLAVACDSIIVQKGSWMTLDGLKAELFFVADPLKKLGVSFQAAQWKKYKSAVETFT 194 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGAEAKKVGLID 225 + +P+ ++ ++D ++ ++ VS R I D + D + T +A + LID Sbjct: 195 RNSASPENLEETNALLDDAWSDYLDSVSRQRRIGKDAFRKVVDSLAVLTPEKALGLHLID 254 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIK 250 V + E+ Q + + Sbjct: 255 RVATERELEQEYARRLNKPAAELLV 279 >gi|289667892|ref|ZP_06488967.1| protease IV [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 583 Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 64/267 (23%), Positives = 121/267 (45%), Gaps = 11/267 (4%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVS 72 + D+ P VA + G+I + + + D+ A+++ Sbjct: 270 LSQLQAQGSPMDSRPQVAVVVATGEISGGEQPAGRIGGESTAALLRQARDDEKVKAVVLR 329 Query: 73 LSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 + SPGG +A E I R + + + KPV+ + ++AAS GY IS ++ I A +++ GS Sbjct: 330 VDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGS 389 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IG+ P + LDK+GV V ++ ++P A Q++Q V++ Y F Sbjct: 390 IGIFGMVPNLTRALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTG 449 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIK 250 V+++R+ D ++ GR+W+GA+AK+ GL+D GG +E + +++ Sbjct: 450 KVAQARHQSVDAIDKVARGRVWSGAQAKERGLVDAFGGMQEAVADAADRAKLSRGKFRVR 509 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIP 277 P + + + S + + Sbjct: 510 YVEKPATPFSQLMSGFAGSRMGAWMLS 536 Score = 68.5 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 81/210 (38%), Gaps = 12/210 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQKVKNRKPVITEVHEMAAS 109 ++L+ IE +D ++++L S +A + + A+QK++ I E + Sbjct: 49 RDLVRVIEAAGKDRKIERVLLNLDKFQPSGFASQREVAAALQKLRASGKQIVAFSESMSQ 108 Query: 110 AGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167 YL++ +N + V G+ ++ + + DKLGV + + K+ P+ Sbjct: 109 GQYLLAAQANEVYLDPMGSVMLEGLGRYRQYFREGLQDKLGVDVHLFRVGEYKSAAEPYI 168 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEA 218 + A + ++ + ++ + +R + + ++ A Sbjct: 169 LDAASADAKEADLFWMNDVWQRYLADIGTARKLSPAQLTAGIDTLPEGVAAAGGDLAKFA 228 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + L+D + +EEV L GV S Sbjct: 229 LQQKLVDGLKTREEVDALLVKRGVADSDAD 258 >gi|58038620|ref|YP_190584.1| protease IV [Gluconobacter oxydans 621H] gi|58001034|gb|AAW59928.1| Protease IV [Gluconobacter oxydans 621H] Length = 278 Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 74/269 (27%), Positives = 134/269 (49%), Gaps = 5/269 (1%) Query: 29 SHVEDNSPHVARIAIRGQIEDS-QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 S + PH+ R+AI G I++ + + +++ T L++ + SPGG GE + Sbjct: 9 SANSIHRPHIVRLAISGIIKNDVSQTVRALKQAREASDVTGLLLVVDSPGGGVTGGERLH 68 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 A+++ KPV + ++ ASA Y++S + IVA ++L GSIGVLFQ P V L + Sbjct: 69 EAVKRFAAVKPVAVSMGDVGASAAYMLSVPAQHIVALPSTLTGSIGVLFQRPDVSVGLGR 128 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 LG+ + ++ S MK + P S + P+ QM+Q +V+ + FV +V+E R++ +K L Sbjct: 129 LGIGMDAITSGAMKDQTDPTSALTPEGRQMLQGLVNDLFGQFVSMVAEGRHLSEEKVRSL 188 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI-RKIKDWNPPKNYWFCDLKNL 266 +DGR +TG +A +GL+D +G ++ L + + P + ++ Sbjct: 189 ADGRAYTGRQAIALGLVDELGDEDAARLWLRKQLKIGNASYPVVPLIPEHSRYWYQWPGK 248 Query: 267 SI---SSLLEDTIPLMKQTKVQGLWAVWN 292 L ++ + + G A+ Sbjct: 249 KALLKGLLGGTFSSVIDREGLDGAVAILQ 277 >gi|47093447|ref|ZP_00231211.1| peptidase, U7 family [Listeria monocytogenes str. 4b H7858] gi|47018175|gb|EAL08944.1| peptidase, U7 family [Listeria monocytogenes str. 4b H7858] gi|328465083|gb|EGF36357.1| hypothetical protein LM1816_12752 [Listeria monocytogenes 1816] Length = 337 Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 134/280 (47%), Gaps = 19/280 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76 E + +A +++ G I+D+ + ++++E++ DD+ +++ ++SP Sbjct: 56 EEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLEQVRNDDNIQGVLLYVNSP 115 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG I I +++ + P + MAAS GY IS ++ I A++ +L GS+GV Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + Q + KLGVS ++KS K S + ++MQ ++D SY+ FV++V+ Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + R + ++ ++DGRI+ G +AK+ GLID G QE+ ++L I+ P Sbjct: 236 QGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALEALKKEQGLAGATVIQYDAP 295 Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291 + IS + + I L K + ++ Sbjct: 296 GDFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYLY 335 >gi|332876682|ref|ZP_08444441.1| signal peptide peptidase SppA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685387|gb|EGJ58225.1| signal peptide peptidase SppA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 587 Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 77/279 (27%), Positives = 126/279 (45%), Gaps = 14/279 (5%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIED-----------SQELIERIERISRDDSATALIVS 72 + + +A G I D ++ + + + D+S A+++ Sbjct: 290 LAAATEATPKKGDKIAVYYAYGDIVDRKTEWSENVIDAETVCRDLRTLREDESVKAVVLR 349 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 ++S GGSAYA E I+ ++ ++ KPV+ + MAAS GY ISCA+N IVA T+L GSI Sbjct: 350 VNSGGGSAYASEQIWHEVKLLREAKPVVVSMGGMAASGGYYISCAANYIVAEPTTLTGSI 409 Query: 133 GVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 G+ P L DKLG+ VK++ +P NP QMMQ + Y F Sbjct: 410 GIFGLIPDASQLLSDKLGLHFDVVKTNAHADFGTPARPFNPSEAQMMQGYIQRGYKLFTE 469 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 V++ RN+ + L++GR+WTG +A + GL D G + + +L + + Sbjct: 470 RVADGRNMKTGQVKKLAEGRVWTGRQAVENGLADTNGNLQTAIKKAASLAKIKDYHT--E 527 Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + P + W+ L + L + T L + Sbjct: 528 YAPTPSPWYEGLFDQQKKDYLNTALQETLGTYYAPLMNL 566 Score = 92.0 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 93/259 (35%), Gaps = 24/259 (9%) Query: 11 RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------------Q 51 + +L ++++ + S+ V R+ + G++++ + Sbjct: 21 AFFILGILSIVGMMTVESAAPSIKPQSVLRLTLNGELQEDAPNDPLGDLFGSTYPTLSLR 80 Query: 52 ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 E+ I+ + + + + + G + I ++ K I + Sbjct: 81 EIQTAIQGAKENPNIDGIYIEAQTLLGATPAMIRDIRESLADFKKSGKYIIAYGDNYTQG 140 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168 Y I ++ I+ V G+ Q + K L+K+G+ ++ K K+ PF + Sbjct: 141 AYYICSIADSIILNPQGQVNWCGMASQPIFYKDLLEKIGIKMQVFKVGSYKSAVEPFTAT 200 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLIDV 226 +++ + + ++ + + VS SR+I D +D E + G++D Sbjct: 201 QMSDANREQVTSYLNDIWQTMLTDVSRSRSIKKDLLNEYADSMLTFRPAEELVRNGMVDS 260 Query: 227 VGGQEEVWQSLYALGVDQS 245 + + V + L A Sbjct: 261 LCYIDGVSRMLRAKTGKDK 279 >gi|186475587|ref|YP_001857057.1| peptidase S49 [Burkholderia phymatum STM815] gi|184192046|gb|ACC70011.1| peptidase S49 [Burkholderia phymatum STM815] Length = 336 Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 64/289 (22%), Positives = 115/289 (39%), Gaps = 16/289 (5%) Query: 7 KIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIER 59 +I R+V L ++ L V + H A + + G+I +++ + Sbjct: 52 RIFFRFVFLGVLVLIAWAVLDFSGEKVATSGRHTALVTLDGEIASDTNANAEDIDMALAN 111 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISC 116 D +++ +SPGGS I+R I++++ + P I V +M AS GY + Sbjct: 112 AFDDAGTAGVVLRCNSPGGSPVQAGIIYREIRRLRGKYPAIPLYVVVGDMCASGGYYAAA 171 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 A++ I + S+VGSIGVL +DKLG+ + S K PFS PK Sbjct: 172 AADKIYVDKASIVGSIGVLMDGFGFTGLMDKLGIQRRMRTSGENKGFYDPFSPDTPKMDS 231 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q ++D + F+ V + R + G WTG ++ ++GL D G V + Sbjct: 232 HAQVMLDEIHAQFIDAVKQGRGKRLQDNPDIFSGLFWTGEKSVELGLADGFGDTNYVARE 291 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 + + D+ ++ + + + K+ Sbjct: 292 IIK------APDVVDYTVKESITDRVARKFGAAVGGGAVRAMATIGKLN 334 >gi|283955437|ref|ZP_06372935.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. jejuni 414] gi|283793064|gb|EFC31835.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. jejuni 414] Length = 298 Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 67/279 (24%), Positives = 134/279 (48%), Gaps = 2/279 (0%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 + + +K I T + L+ + + S + N ++ RI ++G+I DS ++E+I Sbjct: 11 LGYGIKFINTYFKTFVLLLIVIWILMPSVNSSSNLANLERIDLKGEIFDSSAVLEKIINA 70 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 D+S ++ + SPGG+ + AI+ +KN+KPV+ AS YL +N Sbjct: 71 KNDNSIKGVLFVIDSPGGAFAPSMELALAIKDLKNKKPVLVYASGTMASGSYLAGVGANK 130 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 I+A S +GSIGV+ Q + +KLG+ +++++ K+ + + +Q Sbjct: 131 ILANPASFIGSIGVIMQGADLSGLANKLGIKEQTIQAGEFKSAGTFARAWSEDERNFLQG 190 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 ++D SY F V++ R + +K ++ R++ A+AK++GLID + E + L L Sbjct: 191 LIDQSYDLFTGFVAKERTLDLNKKNQWANARVFLAAKAKELGLIDGLSNYENAKKELEKL 250 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 + + + + L+ + S + + I ++ Sbjct: 251 ANVSN--PVWKEEDKFDKFLNRLEGQASSLISKSLIEIV 287 >gi|296121657|ref|YP_003629435.1| signal peptide peptidase SppA, 36K type [Planctomyces limnophilus DSM 3776] gi|296013997|gb|ADG67236.1| signal peptide peptidase SppA, 36K type [Planctomyces limnophilus DSM 3776] Length = 649 Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 57/276 (20%), Positives = 128/276 (46%), Gaps = 9/276 (3%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79 + ++Y S + + G++ S+ I+ + ++ DD+ A+++ + SPGGS Sbjct: 354 VGILYASGMISTGSSQNS----PLSGEVLGSETFIKAVRQLRDDDTVKAVVLRIDSPGGS 409 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A A + ++ ++ +K +KP++ + ++A S GY I+ + I AA ++ GSIGV+ Sbjct: 410 ALASDLMWHELELLKAKKPLVASMSDVAGSGGYYIAMGTQKIYAAPGTVTGSIGVVGGKV 469 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 ++ +KLG+++ ++ S + + + +++ Y F + R + Sbjct: 470 ALEKLYNKLGINVVVLERGKNSGVLSTTTGFTESQREATRLLMNEIYEQFTSKAAAGRKM 529 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK--DWNPPKN 257 + L+ GRI++G A ++GL+D +G E+ + AL ++ K++ + P + Sbjct: 530 EVAQLEKLARGRIYSGNRALEIGLVDEIGTLEDAIKGAIALAKIENPAKLERLELPKPGS 589 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 L + S +E + + + P Sbjct: 590 PLESLLGPMGAESRMEARLEQRLKDLIPTAL---QP 622 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 108/263 (41%), Gaps = 18/263 (6%) Query: 37 HVARIAIRGQIEDSQ--------------ELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + I G + + LI R+++ + D +++ Sbjct: 86 KIAHLKISGALTEGAPLEGLFGETSETLFTLIARLDKAAADKEIQTVVLEFGDLALGRGK 145 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + AI +++ + + A + YL++ A + IV E +++ GV + + K Sbjct: 146 IYELRSAIARIRAAGKDVWAYLDSADTTAYLLASACDKIVMPEPAMLMIPGVRAEVWFYK 205 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K+ V + V+ K+ P+ +++P+ + M +++D Y V ++ESR IP Sbjct: 206 EMLSKIDVEPEVVRIGEFKSAGEPYTRKDMSPEFKKEMDELLDDVYSQIVSTIAESRKIP 265 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 DK L D ++T +AK GL+D V + ++ + S + +++ K Sbjct: 266 ADKVRELIDTAVFTSEKAKSAGLLDEVQYESGLYDVIKKSHNVTSAKLTRNYGRKKT--D 323 Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283 DL L+ L + + Sbjct: 324 ADLSGLNGIITLMNALSGQTPAS 346 >gi|258626525|ref|ZP_05721365.1| Protease IV [Vibrio mimicus VM603] gi|258581236|gb|EEW06145.1| Protease IV [Vibrio mimicus VM603] Length = 642 Score = 142 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 70/287 (24%), Positives = 127/287 (44%), Gaps = 14/287 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 ++ S + + + +A + G I D + + D + A Sbjct: 333 ISYYEYKASVKPTLLNEANDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 392 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I I+ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 393 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 452 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + L+ LG+ V ++P + + + A +Q ++ Y Sbjct: 453 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGVTTGLTQGAKDAIQLGIEHGYQ 511 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F+ LV+E R + L+ GR+WT +A+ +GL+D +G ++ L + Sbjct: 512 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 571 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + +++ P + DL SL D + + +Q L W Sbjct: 572 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSALLPKSLQPLATEWQ 617 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 47/324 (14%), Positives = 108/324 (33%), Gaps = 39/324 (12%) Query: 1 MEFVLKKIKTRYVMLSL-VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + F+ + +LS+ + + + + N + + G I + Sbjct: 45 ITFIRLALTNLIFLLSIGIIYFIYVHADAPMPSVNKASALILNLSGPIVEQSTHINPMDS 104 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 ++++ + D++ T L+++ P + I +AI + Sbjct: 105 FAGSVFGEELPRENVLFDIVDTLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 164 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K+ + V + + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 165 KSSGKPVYAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 224 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203 + K+ PF +++ A + + + +V V+ +R I + Sbjct: 225 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIAIKTLTPTMDEF 284 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDWNPPKNYWFC 261 L + A +K+VGL+D + +++V Q+L + + K Sbjct: 285 VAQLKEVGGDLAALSKQVGLVDELATRQQVRQTLAETFGSDGKDSYNAISYYEYKASVKP 344 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQ 285 L N + + + Sbjct: 345 TLLNEANDIAVVVASGAIMDGSQP 368 >gi|54297662|ref|YP_124031.1| hypothetical protein lpp1713 [Legionella pneumophila str. Paris] gi|53751447|emb|CAH12865.1| hypothetical protein lpp1713 [Legionella pneumophila str. Paris] Length = 318 Score = 142 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 76/291 (26%), Positives = 129/291 (44%), Gaps = 23/291 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWS-------SHVEDNSPHVARIAIRGQIEDS-----QEL 53 +K + ++++ +++ + +VY S+ + + H+ I I G+I DS Sbjct: 30 RKRRWKWIIRTIILVVLVYSSYKIVSVAKTTEASKDKEHIGLIDINGEIADSSSASADNF 89 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASA 110 + IE+ R ALIV ++SPGGS E I+ + + +K +M ASA Sbjct: 90 TKGIEKAYRSKGLKALIVRINSPGGSPVQAEYIYNVLQYYKSLKPNIKTYAVCVDMCASA 149 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 Y ++ ++ I A+ S+VGSIGVL+ L KLG+S + S KA PFS Sbjct: 150 AYYVAVGADEIYASPASMVGSIGVLYNGFGFVDALQKLGISRRLQTSGVNKAFLDPFSPT 209 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + +Q ++D + F+ V E R G WTG +A GLID Sbjct: 210 TEFQKEKLQTMLDIVHKQFITRVKEGRGNRLHVDDETFSGLFWTGEQALANGLIDGYASS 269 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 ++ + + I I D+ +N + KNL + + D +P++ Sbjct: 270 GQLAREVIK------ITDIVDYTYKQNVFDRLTKNLGTA--MADELPVILG 312 >gi|262171018|ref|ZP_06038696.1| protease IV [Vibrio mimicus MB-451] gi|261892094|gb|EEY38080.1| protease IV [Vibrio mimicus MB-451] Length = 616 Score = 142 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 70/287 (24%), Positives = 127/287 (44%), Gaps = 14/287 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 ++ S + + + +A + G I D + + D + A Sbjct: 307 ISYYEYKASVKPTLLNEANDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I I+ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + L+ LG+ V ++P + + + A +Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGVTTGLTQGAKDAIQLGIEHGYQ 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F+ LV+E R + L+ GR+WT +A+ +GL+D +G ++ L + Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + +++ P + DL SL D + + +Q L W Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSALLPKSLQPLATEWQ 591 Score = 94.7 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 47/324 (14%), Positives = 107/324 (33%), Gaps = 39/324 (12%) Query: 1 MEFVLKKIKTRYVMLSL-VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + F+ + +LS+ + + + + N + + G I + Sbjct: 19 ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPSVNKASALILNLSGPIVEQSTHINPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 ++++ + D++ T L+++ P + I +AI + Sbjct: 79 FAGSVFGEELPRENVLFDIVDTLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K+ + V + + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 139 KSSGKPVYAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF +++ A + + + +V V+ +R I D Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIDIKTLTPTMDEF 258 Query: 212 I--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDWNPPKNYWFC 261 + A +K+VGL+D + +++V Q+L + + K Sbjct: 259 VAQLKEVGGDLAALSKQVGLVDELATRQQVRQALAETFGSDGKDSYNAISYYEYKASVKP 318 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQ 285 L N + + + Sbjct: 319 TLLNEANDIAVVVASGAIMDGSQP 342 >gi|262166101|ref|ZP_06033838.1| protease IV [Vibrio mimicus VM223] gi|262025817|gb|EEY44485.1| protease IV [Vibrio mimicus VM223] Length = 616 Score = 142 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 70/287 (24%), Positives = 127/287 (44%), Gaps = 14/287 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 ++ S + + + +A + G I D + + D + A Sbjct: 307 ISYYEYKASVKPTLLNEANDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I I+ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + L+ LG+ V ++P + + + A +Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGVTTGLTQGAKDAIQLGIEHGYQ 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F+ LV+E R + L+ GR+WT +A+ +GL+D +G ++ L + Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + +++ P + DL SL D + + +Q L W Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSALLPKSLQPLATEWQ 591 Score = 95.1 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 48/324 (14%), Positives = 108/324 (33%), Gaps = 39/324 (12%) Query: 1 MEFVLKKIKTRYVMLSL-VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + F+ + +LS+ + + + + N + + G I + Sbjct: 19 ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPSVNKASALILNLSGPIVEQSTHINPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 ++++ + D++ T L+++ P + I +AI + Sbjct: 79 FAGSVFGEELPRENVLFDIVDTLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K+ + V + + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 139 KSSGKPVYAVSDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF +++ A + + + +V V+ +R I D Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIDIKTLTPTMDEF 258 Query: 212 I-----WTGAEA---KKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDWNPPKNYWFC 261 + +G A K+VGL+D + +++V Q+L + + K Sbjct: 259 VAQLKEVSGDLAALSKQVGLVDELATRQQVRQALAETFGSDGKDSYNAISYYEYKASVKP 318 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQ 285 L N + + + Sbjct: 319 TLLNEANDIAVVVASGAIMDGSQP 342 >gi|320101772|ref|YP_004177363.1| signal peptide peptidase SppA, 36K type [Isosphaera pallida ATCC 43644] gi|319749054|gb|ADV60814.1| signal peptide peptidase SppA, 36K type [Isosphaera pallida ATCC 43644] Length = 379 Score = 142 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 72/269 (26%), Positives = 130/269 (48%), Gaps = 10/269 (3%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + + +A I I G I+DS + +I + S D S +++ + SPGG+ A + Sbjct: 86 AGPIGPGKAKLAIIEITGSIDDSKADGISRQITQASLDSSVKGVLLRIDSPGGTVSASDR 145 Query: 86 IFRAIQ-KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 ++R +Q ++ RKPV+ + AAS GY I+CA + + A ++ GSIGV+ + P + Sbjct: 146 LWRDVQTRLVGRKPVVVSMGSRAASGGYYIACAGDALFAEPATITGSIGVILEIPQISGL 205 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 LDK+GV ++ + K S + + + Q +D SY F+R+V++ R + + Sbjct: 206 LDKIGVEFATLTTGKFKDSGSIYRPITNEERQRFLKSIDQSYQRFLRVVAQGRKMELSQL 265 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 L+DG I++G EA + GL+D +G Q++ + L L + ++ + PP + Sbjct: 266 KPLADGSIFSGEEALENGLVDFLGYQDDALRHLLKLTRLEEA-QVVRYVPPNSLATLLEL 324 Query: 265 NLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 S L ++W P Sbjct: 325 LELGSRL------PSPHPDPDESLSLWAP 347 >gi|217420954|ref|ZP_03452459.1| putative signal peptide peptidase SppA, 36K type [Burkholderia pseudomallei 576] gi|254184191|ref|ZP_04890781.1| peptidase, U7 family protein [Burkholderia pseudomallei 1655] gi|184214722|gb|EDU11765.1| peptidase, U7 family protein [Burkholderia pseudomallei 1655] gi|217396366|gb|EEC36383.1| putative signal peptide peptidase SppA, 36K type [Burkholderia pseudomallei 576] Length = 333 Score = 142 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 63/289 (21%), Positives = 126/289 (43%), Gaps = 17/289 (5%) Query: 7 KIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 +I R+ L+++ + F S + H A + I G+I +++++ ++ Sbjct: 48 RIFFRFAFLAVLGVLAFAFLSVSGDGSKLASGRHTAVVTIDGEIAASTNANAEDINTALD 107 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115 D +++ ++SPGGS ++ I++++ + KP+ V +M AS GY I+ Sbjct: 108 SAFEDSGTVGVVLKINSPGGSPVQAGIVYDEIRRLRKKYPAKPLYVVVSDMCASGGYYIA 167 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL + KLGV + S K PFS PK Sbjct: 168 AAADKIYVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFFDPFSPETPKMD 227 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q+++D + F++ V + R ++ + G WTGA++ ++GL D G + V + Sbjct: 228 AHAQEMLDEIHAQFIKAVKDGRGARLHESPDIFSGLFWTGAKSIELGLADDYGTTDTVAR 287 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + + D+ ++ + + + ++ Sbjct: 288 DVLK------APDLVDYTVKESLTDRVARRFGAALGKAALKAAVAGGEL 330 >gi|16803625|ref|NP_465110.1| hypothetical protein lmo1585 [Listeria monocytogenes EGD-e] gi|224501475|ref|ZP_03669782.1| hypothetical protein LmonFR_02992 [Listeria monocytogenes FSL R2-561] gi|254831986|ref|ZP_05236641.1| hypothetical protein Lmon1_11555 [Listeria monocytogenes 10403S] gi|284801977|ref|YP_003413842.1| hypothetical protein LM5578_1732 [Listeria monocytogenes 08-5578] gi|284995119|ref|YP_003416887.1| hypothetical protein LM5923_1684 [Listeria monocytogenes 08-5923] gi|16411014|emb|CAC99663.1| lmo1585 [Listeria monocytogenes EGD-e] gi|284057539|gb|ADB68480.1| hypothetical protein LM5578_1732 [Listeria monocytogenes 08-5578] gi|284060586|gb|ADB71525.1| hypothetical protein LM5923_1684 [Listeria monocytogenes 08-5923] Length = 337 Score = 142 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 134/280 (47%), Gaps = 19/280 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76 E + +A +++ G I+D+ + ++++E++ DD+ +++ ++SP Sbjct: 56 EEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLEQVRNDDNIQGVLLYVNSP 115 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG I I +++ + P + MAAS GY IS ++ I A++ +L GS+GV Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + Q + KLGVS ++KS K S + ++MQ ++D SY+ FV++V+ Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + R + ++ ++DGRI+ G +AK+ GLID G QE+ ++L I+ P Sbjct: 236 QGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALEALKKEQGLAGATVIQYDAP 295 Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291 + IS + + I L K + ++ Sbjct: 296 GDFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYLY 335 >gi|254824356|ref|ZP_05229357.1| peptidase [Listeria monocytogenes FSL J1-194] gi|255520878|ref|ZP_05388115.1| hypothetical protein LmonocFSL_06586 [Listeria monocytogenes FSL J1-175] gi|293593590|gb|EFG01351.1| peptidase [Listeria monocytogenes FSL J1-194] Length = 337 Score = 142 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 134/280 (47%), Gaps = 19/280 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76 E + +A +++ G I+D+ + ++++E++ DD+ +++ ++SP Sbjct: 56 EEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLEQVRNDDNIQGVLLYVNSP 115 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG I I +++ + P + MAAS GY IS ++ I A++ +L GS+GV Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + Q + KLGVS ++KS K S + ++MQ ++D SY+ FV++V+ Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + R + ++ ++DGRI+ G +AK+ GLID G QE+ ++L I+ P Sbjct: 236 QGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALEALKKEQGLAGATVIQYDAP 295 Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291 + IS + + I L K + ++ Sbjct: 296 GDFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYLY 335 >gi|165937987|ref|ZP_02226547.1| peptidase [Yersinia pestis biovar Orientalis str. IP275] gi|165914010|gb|EDR32627.1| peptidase [Yersinia pestis biovar Orientalis str. IP275] gi|327536450|gb|AEA95283.1| peptidase-like protein [Salmonella enterica subsp. enterica serovar Dublin] Length = 319 Score = 142 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 68/284 (23%), Positives = 125/284 (44%), Gaps = 16/284 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSS----HVEDNSPHVARIAIRGQIE-----DSQELI 54 +L+ ++ +L ++ ++ + + +PH A I IRG+I D+ LI Sbjct: 34 MLRVLRASGFVLLMIGFIILASNPGGMPWQSAKAGAPHTAYINIRGEIAAGTLADADHLI 93 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAG 111 I+ + ++ A+++ ++SPGGS I+ + + + K V + ++ AS G Sbjct: 94 PSIQAAFDNPNSQAIVLRINSPGGSPVQAGRIYDEVKAQRALHPEKKVYAIIDDIGASGG 153 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I A SLVGSIGV+ +DKLG+ +++ S KA PFS + Sbjct: 154 YYIASAADEIYADRASLVGSIGVISSGFGFTGLMDKLGIERRAITSGEHKALLDPFSPLT 213 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + + V+ ++ F+ V R + G +W G +AK +GLID +G Sbjct: 214 SDMKKFWEGVLSKTHQQFIERVKAGRGDRLKDDPEVFSGLLWNGEQAKDIGLIDGLGSLN 273 Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 V + + +D L SS +++ Sbjct: 274 SVARDVIHQSNLVDYTPTEDIIRR----LTQRAKLEASSFVQEL 313 >gi|158521750|ref|YP_001529620.1| signal peptide peptidase SppA, 36K type [Desulfococcus oleovorans Hxd3] gi|158510576|gb|ABW67543.1| signal peptide peptidase SppA, 36K type [Desulfococcus oleovorans Hxd3] Length = 319 Score = 142 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 70/285 (24%), Positives = 121/285 (42%), Gaps = 22/285 (7%) Query: 31 VEDNSPHVARIAIRGQIED--------------SQELIERIERISRDDSATALIVSLSSP 76 +A +++ G I D E + ++ D S AL++ ++SP Sbjct: 27 EGSGPQKIAMVSVNGAITDKPTRDFMSRNHPGMLDEFVAQLALAKEDPSIKALVLKVNSP 86 Query: 77 GGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG+ A + +++ + K + KPV+ + ++AAS GY IS ++ I+A T+L GS+GV Sbjct: 87 GGTITASDIMYKELMDFKQQTGKPVVAALMDVAASGGYYISLPADHILAHPTTLTGSVGV 146 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 +F P V +DKLG+ +K KS K SPF + + + ++D F LV Sbjct: 147 IFVTPRVSGLMDKLGLDMKIRKSGKHKDMGSPFRDTTAEEDALFDGIIDDMAGRFAGLVE 206 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN- 253 + R + RI+T +A GL+D VG E+ + + + Sbjct: 207 KHRADQKPDMEKIKTARIFTADDALSAGLVDQVGYLEDALAQAKKMAGLPDNAAVVTYRR 266 Query: 254 ---PPKNYWFCDLKNLSISSLLEDTIPLMKQTKV--QGLWAVWNP 293 P + + S I L++ GL+ +W P Sbjct: 267 TYYPNDTIYNTLVTQYGAHSGALVNIDLLESMPALKPGLYYLWWP 311 >gi|172038284|ref|YP_001804785.1| protease IV, 36K short form [Cyanothece sp. ATCC 51142] gi|171699738|gb|ACB52719.1| protease IV, 36K short form [Cyanothece sp. ATCC 51142] Length = 272 Score = 142 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 72/266 (27%), Positives = 139/266 (52%), Gaps = 8/266 (3%) Query: 34 NSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 S +ARI I G I + ++E + + AL++ + SPGG+ + I+ A++ Sbjct: 9 PSKQIARIEITGAIASETRKYVLEALNTVKE-KKFPALLLRIDSPGGTVGDSQEIYEALK 67 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 +++++ ++ ++AS G I + I+A ++ GSIGV+ + ++ LDK+GVS Sbjct: 68 RLQDKVKIVASFGNISASGGVYIGMGAQHIMANPGTITGSIGVILRGNNLERLLDKIGVS 127 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 K +KS P K + E+ + ++Q+++D+SY FV V++ RN+ +K +DGR Sbjct: 128 FKVIKSGPYKDILAFDRELTEEEHHILQEMIDTSYQQFVTTVAQGRNLDVNKVKTFADGR 187 Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFCDLKNLSISS 270 I+TG +A ++G++D +G +E+ + L + D PK+ L S Sbjct: 188 IFTGQQALELGVVDRLGTEEDARRWAAELAGLNPDKAQCYDIEEPKSLLNRVLSRNQSKS 247 Query: 271 LLEDTIPLMK---QTKVQGLWAVWNP 293 L+ ++ ++ +T Q LW ++ P Sbjct: 248 KLKTSMDWLEFELKTNGQPLW-LYRP 272 >gi|329121217|ref|ZP_08249844.1| signal peptide peptidase [Dialister micraerophilus DSM 19965] gi|327470151|gb|EGF15614.1| signal peptide peptidase [Dialister micraerophilus DSM 19965] Length = 322 Score = 142 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 78/300 (26%), Positives = 140/300 (46%), Gaps = 26/300 (8%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHV-----EDNSPHVARIAIRGQI-------------- 47 KI +++ + + F V ++N+ +VA + I G I Sbjct: 14 KITLAVIIVLFILAIAINFVGMKDVSSFANKNNNKYVAVVRIDGPIYGGDVNQNMLGGVS 73 Query: 48 -EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHE 105 S++++ + +RD +A A+++ ++SPGG+ A + I I KV+N KPVI + + Sbjct: 74 GSSSEDIMYELREATRDPNAKAVLLRINSPGGTTGATQEIAEEIDKVRNSGKPVIVSMGD 133 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 ASAGY ++ + I A+ ++ GSIGV Y V +DKLGV + +KS K S Sbjct: 134 TCASAGYWLASKGDYIFASPATITGSIGVYMDYTNVSELMDKLGVKNEKIKSGTHKDILS 193 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 + + + ++Q +VD Y+ FV+ +++ R++ K ++DGRI TG +A+ GL+D Sbjct: 194 MYRPITDEEKTILQKMVDDIYNQFVQTIADGRHLEEAKVREIADGRILTGKQAQAYGLVD 253 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 +G + S D P ++Y +S+ + +T V Sbjct: 254 AMGNYYDALTYAGNRVGINS-----DVIPTRSYSKGMTLRGLLSAEMNNTAQNFASRIVD 308 >gi|239947709|ref|ZP_04699462.1| signal peptide peptidase SppA [Rickettsia endosymbiont of Ixodes scapularis] gi|239921985|gb|EER22009.1| signal peptide peptidase SppA [Rickettsia endosymbiont of Ixodes scapularis] Length = 304 Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 78/298 (26%), Positives = 153/298 (51%), Gaps = 15/298 (5%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSW-----------SSHVEDNSPHVARIAIRGQIEDSQEL 53 ++IK+R ++ L + ++ + H+ N ++A + I I + ++ Sbjct: 11 RRQIKSRLLIWKLAAIILIAIVFLLVGKDFAPKEVLHINSNEDYIASVLIDEIILEDEKR 70 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 +++++I D ALIV+++SPGG+ E I+ ++K+ +KPV+ + +AAS GYL Sbjct: 71 DKKLKKIIDDSHIKALIVNVNSPGGTVVGSEKIYNILRKISEKKPVVIVMGTIAASGGYL 130 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 IS + IV+ ++ GSIGV+ Q V KLG+ + KS +KA P+P ++ Sbjct: 131 ISLGGDYIVSHNGTITGSIGVILQTAEVTELAQKLGIKFNNFKSGELKAVPNPTEKLTEA 190 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 + + ++ +Y++F+ LVSE RN+P ++ L+DGR+++G +A K+ L+D +G ++ Sbjct: 191 VRVAIMENIEDTYNFFLELVSERRNLPIEEVKKLADGRVYSGRQALKLKLVDAIGSEDTA 250 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 + L + +KD+ D+ S+ P + G+ A++ Sbjct: 251 LKWLQEVKKINVNLLVKDYQLKPKPKLMDIILEDFDSIT----PSFFKNSFNGIKAIF 304 >gi|197106190|ref|YP_002131567.1| signal peptide peptidase SppA [Phenylobacterium zucineum HLK1] gi|196479610|gb|ACG79138.1| signal peptide peptidase SppA [Phenylobacterium zucineum HLK1] Length = 590 Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 70/277 (25%), Positives = 122/277 (44%), Gaps = 18/277 (6%) Query: 28 SSHVEDNSPHVARIAIRGQI----------------EDSQELIERIERISRDDSATALIV 71 + S +A I G I S +L + I+R +R S A+++ Sbjct: 286 TERRARGSDSIALIEAEGPILTGRDEGASPFVSNAAIYSDDLADAIQRATRAKSVKAIVL 345 Query: 72 SLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 ++SPGGS A E I A++ K + KPV+ + AAS GY I+ ++ IVA T+L G Sbjct: 346 RVNSPGGSDTASEQILDAVRAAKAKGKPVVVSMSSYAASGGYWIASEASAIVAQPTTLTG 405 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSS-PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 SIGV + L + GV ++ P + +D Y F Sbjct: 406 SIGVFGGKFALGDALARFGVDVRQTDVGGPYTGAFNLAEPFTAPQRAAFSRWMDRIYANF 465 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 + V+ RN+P ++ ++ GR+WTGA+A+++GL+D +GG + + AL + +I Sbjct: 466 LERVARGRNLPPERVAEIARGRVWTGAQARELGLVDELGGFYQAVERAKALAGLEGEVQI 525 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + P ++ + + +S+ T+ Sbjct: 526 RRMTPMESPLEALERAMGVSAASVRTLAAAAWVFGDP 562 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 44/294 (14%), Positives = 100/294 (34%), Gaps = 24/294 (8%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ----------------ELIE 55 ++ + + V ++ S V + +R + D ++E Sbjct: 17 IFLVGVPLILVSLALGATTTPVPSRAVLELDLRNNLTDQAPQSPLAGFGRGSVAVMTIVE 76 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS-----A 110 + R D L+V L G + I +A+++ + + + + Sbjct: 77 TLRRAETDSHVKGLLVRLPEGGMEPGMADEIRQALKRFRASGKPVIAHSQGLYPGGVVTS 136 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFS 168 Y++ AS + + + G+ + ++K F DK GV+ + + K +S Sbjct: 137 TYMVGAASGELWMQPGASLQVTGLATEDLFLKRFFDKYGVTPQYEQRQEYKNAVNTFLYS 196 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 + P+ + + S Y + + R + + +A ++ LID VG Sbjct: 197 DYTPEHREATLSWMTSVYGAGLAAAAADRKTDAAALQRTLEAGPYVAEDALRLKLIDRVG 256 Query: 229 GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282 E Q+L A D + ++ + + +L+E P++ Sbjct: 257 QVREAEQALLAKAGD-NAEMVEFRDYAGGRTERRARGSDSIALIEAEGPILTGR 309 >gi|124386100|ref|YP_001028745.1| peptidase, U7 family protein [Burkholderia mallei NCTC 10229] gi|124294120|gb|ABN03389.1| peptidase, U7 family [Burkholderia mallei NCTC 10229] Length = 333 Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 63/289 (21%), Positives = 125/289 (43%), Gaps = 17/289 (5%) Query: 7 KIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 +I R+ L+++ F S + H A + I G+I +++++ ++ Sbjct: 48 RIFFRFAFLAVLGALAFAFLSVSGDGGKLASGRHTAVVTIDGEIAASTNANAEDINTALD 107 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115 D +++ ++SPGGS ++ I++++ + KP+ V +M AS GY I+ Sbjct: 108 SAFEDSGTVGVVLKINSPGGSPVQAGIVYDEIRRLRKKYPAKPLYVVVSDMCASGGYYIA 167 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL + KLGV + S K PFS PK Sbjct: 168 AAADKIYVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFFDPFSPETPKMD 227 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q+++D + F++ V + R ++ + G WTGA++ ++GL D G + V + Sbjct: 228 AHAQEMLDEIHAQFIKAVKDGRGARLHESPDIFSGLFWTGAKSIELGLADDYGTTDTVAR 287 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + + D+ ++ + + + ++ Sbjct: 288 DVLK------APDLVDYTVKESLTDRVARRFGAALGKAALKAAVAGGEL 330 >gi|269217110|ref|ZP_06160964.1| signal peptide peptidase SppA [Slackia exigua ATCC 700122] gi|269129247|gb|EEZ60332.1| signal peptide peptidase SppA [Slackia exigua ATCC 700122] Length = 406 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 57/247 (23%), Positives = 106/247 (42%), Gaps = 8/247 (3%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81 +S + VA I + G I + L ++ + DD A+++ ++S GG++ Sbjct: 138 ASSLSTYGDSVAVITMSGTIGYDGSACSPEGLRAALKSVEADDDIKAVVLRVNSGGGTST 197 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 AGE + + I KP++ + SA Y IS ++ I ++ +G+IG + Q Sbjct: 198 AGEEMSQLIAGF--DKPIVVSSASINCSAAYEISSQADYIYVNHSTAIGAIGTIMQTYDA 255 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 LDKLG+ + S+ S+ K + + + Q++V FV V+ R + Sbjct: 256 SELLDKLGIKVNSIASAESKDSSYGTRPLTDEEREYYQNLVSQINAQFVSSVASGRGMSV 315 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 + L+ G +TG +A GL D +G ++ LG + + D +P ++ Sbjct: 316 AQVQELATGMEFTGDDAVANGLADEIGTYDDALAKAAELGGIKGDFDVVDADPSRSDLAS 375 Query: 262 DLKNLSI 268 L Sbjct: 376 LLGISGS 382 >gi|289664822|ref|ZP_06486403.1| protease IV [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 633 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 65/267 (24%), Positives = 122/267 (45%), Gaps = 11/267 (4%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVS 72 + D+ P VA + G+I + + + D+ A+++ Sbjct: 320 LSQLQAQGSPMDSRPQVAVVVATGEISGGEQPAGRIGGESTAALLRQARDDEKVKAVVLR 379 Query: 73 LSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 + SPGG +A E I R + + + KPV+ + ++AAS GY IS ++ I A +++ GS Sbjct: 380 VDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGS 439 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IG+ P + LDK+GV V ++ ++P A Q++Q V++ Y F Sbjct: 440 IGIFGMVPNLTRALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTG 499 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR-KIK 250 V+++R+ D ++ GR+W+GA+AK+ GL+D GG +E S + +++ Sbjct: 500 KVAQARHQSVDAIDKVARGRVWSGAQAKERGLVDAFGGMQEAVADAADRAKLSSGKFRVR 559 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIP 277 P + + + S + + Sbjct: 560 YVEKPATPFSQLMSGFAGSRMGAWMLS 586 Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 44/288 (15%), Positives = 97/288 (33%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRGQIEDS------ 50 M F + I L L +++ + + P I G + + Sbjct: 21 MNFTRRLIFNLVFFGFLFLLLLLFVVALARGDGTKPLAERTTLVINPEGTLVEQFSADPV 80 Query: 51 ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQ 91 ++L+ IE +D ++++L S +A + + A+Q Sbjct: 81 SRSLAKAVGDKSAEEVQLRDLVRVIEAAGKDRKIERVLLNLDKFQPSGFASQREVAAALQ 140 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGV 150 K++ I E + YL++ +N + V G+ ++ + + DKLGV Sbjct: 141 KLRASGKQIVAFSESMSQGQYLLAAQANELYLDPMGSVMLEGLGRYRQYFREGLQDKLGV 200 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 + + K+ P+ + A + ++ + ++ + +R + + Sbjct: 201 DVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWQRYLADIGTARKLSPAQLTAGI 260 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 ++ A + L+D + +EEV L GV S Sbjct: 261 DTLPEGVAAAGGDLAKFALQQKLVDGLKTREEVDALLVKRGVADSDAD 308 >gi|242347949|ref|YP_002995510.1| peptidase family S49 family protein [Aeromonas hydrophila] gi|224831768|gb|ACN66899.1| peptidase family S49 family protein [Aeromonas hydrophila] Length = 319 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 12/261 (4%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSS----HVEDNSPHVARIAIRGQIE-----DSQELI 54 +L+ ++ +L ++ ++ + + +PH A I IRG+I D+ LI Sbjct: 34 LLRVLRASGFVLLMIGFIILASNPGGMPWQSTKAGAPHTAYINIRGEIAAGTLADADHLI 93 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFR---AIQKVKNRKPVITEVHEMAASAG 111 I+ + ++ A+++ ++SPGGS I+ A++ + K V + ++ AS G Sbjct: 94 PSIQAAFDNPNSQAVVLRINSPGGSPVQAGRIYEEVKALRALHPEKKVYAIIDDIGASGG 153 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I A SLVGSIGV+ +DKLG+ +++ S KA PFS + Sbjct: 154 YYIASAADEIYADRASLVGSIGVISSGFGFTGLMDKLGIERRAITSGEHKALLDPFSPLT 213 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + V+ ++ F+ V R + G +W G +AK +GLID +G Sbjct: 214 SDMKTFWEGVLSKTHQQFIERVKAGRGDRLKDDQEVFSGLLWNGEQAKDIGLIDGLGSLN 273 Query: 232 EVWQSLYALGVDQSIRKIKDW 252 V + + +D Sbjct: 274 SVARDVIHQSNLVDYTPTEDI 294 >gi|220910108|ref|YP_002485419.1| signal peptide peptidase SppA, 36K type [Cyanothece sp. PCC 7425] gi|219866719|gb|ACL47058.1| signal peptide peptidase SppA, 36K type [Cyanothece sp. PCC 7425] Length = 270 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 61/265 (23%), Positives = 127/265 (47%), Gaps = 5/265 (1%) Query: 30 HVEDNSPHVARIAIRGQIEDSQELIERIERIS---RDDSATALIVSLSSPGGSAYAGEAI 86 + +ARI + G I + +R+ + + AL++ + SPGG+ + I Sbjct: 4 PFKPARKQIARIEVTGVIAAA--TRKRLLQAFKTIEEKGFPALLLRIDSPGGTVGDSQEI 61 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 + A+++++ + ++ ++AS G I + I+A ++ GSIGV+ + ++ LD Sbjct: 62 YTALKRLREKVKIVASFGNISASGGVYIGMGAEHIMANPGTITGSIGVILRGNNLERLLD 121 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 K+GVS K++KS P K + E+ ++Q+++D+SY FV+ V+E R + + Sbjct: 122 KIGVSFKTIKSGPYKDILAFDRELTEPEKHILQELIDTSYGQFVQTVAEGRKLAEETVRS 181 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 +DGR++TG +A +GL+D +G +EE + L + + ++ Sbjct: 182 FADGRVFTGQQALALGLVDRLGTEEEARRWAAELVGLDPEKTRCFTIEERKPFWNKFVPG 241 Query: 267 SISSLLEDTIPLMKQTKVQGLWAVW 291 + + L + ++ +W Sbjct: 242 NSQTTLGAGLSWLEFELSTSGLPLW 266 >gi|258621243|ref|ZP_05716277.1| Protease IV [Vibrio mimicus VM573] gi|258586631|gb|EEW11346.1| Protease IV [Vibrio mimicus VM573] Length = 616 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 70/287 (24%), Positives = 128/287 (44%), Gaps = 14/287 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 ++ S + + + +A + G I D + + D + A Sbjct: 307 ISYYEYKASVKPTLLNEANDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I I+ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + L+ LG+ V ++P + + + A +Q +++ Y Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGVTTGLTQGAKDAIQLGIENGYQ 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F+ LV+E R + L+ GR+WT +A+ +GL+D +G ++ L + Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + +++ P + DL SL D + + +Q L W Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSALLPKSLQPLATEWQ 591 Score = 93.1 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 47/324 (14%), Positives = 108/324 (33%), Gaps = 39/324 (12%) Query: 1 MEFVLKKIKTRYVMLSL-VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + F+ + +LS+ + + + + N + + G I + Sbjct: 19 ITFIRLALTNLIFLLSIGIIYFIYVHADAPMPSVNKASALILNLSGPIVEQSTHINPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 ++++ + D++ T L+++ P + I +AI + Sbjct: 79 FAGSVFGEELPRENVLFDIVDTLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K+ + V + + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 139 KSSGKPVYAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203 + K+ PF +++ A + + + +V V+ +R I + Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIAIKTLTPTMDEF 258 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDWNPPKNYWFC 261 L + A +K+VGL+D + +++V Q+L + + K Sbjct: 259 VAQLKEVGGDLAALSKQVGLVDELATRQQVRQTLAETFGSDGKDSYNAISYYEYKASVKP 318 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQ 285 L N + + + Sbjct: 319 TLLNEANDIAVVVASGAIMDGSQP 342 >gi|312795521|ref|YP_004028443.1| Signal peptide peptidase sppA [Burkholderia rhizoxinica HKI 454] gi|312167296|emb|CBW74299.1| Signal peptide peptidase sppA (EC 3.4.21.-) [Burkholderia rhizoxinica HKI 454] Length = 338 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 60/277 (21%), Positives = 117/277 (42%), Gaps = 14/277 (5%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIERIS 61 + ++ + + V+ H A +++ G+I +Q + ++ Sbjct: 56 FFRGAFLAVWIALTWSVFSLLGERSVSAGRHTALVSLNGEIAANSNASAQNIDAALQNAF 115 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCAS 118 D + +I+ ++SPGGS I I++++++ KP+ V ++ AS GY ++ A+ Sbjct: 116 DDSNTAGVILRINSPGGSPVQAGIINTEIRRLRDKYPSKPLYVVVEDICASGGYYVAAAA 175 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I + S+VGSIGV V +DKLG+ + S K PFS + K Q Sbjct: 176 DKIYVDKASIVGSIGVRMDGFGVTGLMDKLGIERRMHTSGENKGFYDPFSPESDKMKQHA 235 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 Q ++D + F+ V + R +T + G WTG ++ ++GL D G + V + + Sbjct: 236 QHMLDDIHAQFIAAVRQGRGKRLKETPDMFSGLFWTGDKSVELGLADGFGSTDYVAREVI 295 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 I D+ ++ + + Sbjct: 296 K------APDIVDYTVKESITDRVARKFGAAVGGAAL 326 >gi|296168584|ref|ZP_06850388.1| protease IV [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896647|gb|EFG76286.1| protease IV [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 594 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 69/280 (24%), Positives = 125/280 (44%), Gaps = 21/280 (7%) Query: 30 HVEDNSPHVARIAIRGQIEDS----------------QELIERIERISRDDSATALIVSL 73 P +A I + G I D + + + DDS +A+++ + Sbjct: 295 PGRKPKPTLAVITLDGMIVDGRGGPQFLPFGAATAGGDTIGAALREAAADDSVSAIVLRV 354 Query: 74 SSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 +SPGG+ A E+I+R + + + R KPV+ + +AAS GY +S ++ IVA ++ GSI Sbjct: 355 NSPGGTITASESIWREVTRARKRGKPVVASMGAVAASGGYYVSMGADAIVANPATVTGSI 414 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GV+ ++ L++LGV +V+++ S + P+ + D Y FV+ Sbjct: 415 GVITGKLVIRDLLERLGVGSDTVRTNANADAWSIDAPFTPEQRAHREAEADLFYADFVQR 474 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 V+E+RN+ + ++ GRIWTGA+A GL+D +GG + L ++ Sbjct: 475 VAEARNLTTEAAESVAQGRIWTGADALDRGLVDELGGFRAAVRRAKVLAGLDEDSDVRIV 534 Query: 253 NPPKNYWFCD----LKNLSISSLLEDTIPLMKQTKVQGLW 288 P + + ++ L D + + V Sbjct: 535 AYPSSSLLDMVRPRASSQPAAASLPDALGALLGRTVTSFL 574 Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 70/196 (35%), Gaps = 2/196 (1%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 ++ + + R + D LI + A + + AI KP + + Sbjct: 64 RDAVAAVHRAAEDPRVAGLIARVQLAASPPAAVQELREAIAAFSAAKPSLAWAETYPGTL 123 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE--PSPFS 168 Y ++ A + + VG IG +++ DK G+ + V K+ Sbjct: 124 SYYLASAFREVWMQPSGSVGLIGFASNETFLRDAFDKAGIEPQFVARGQYKSWANRFTEH 183 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 + + +++S R +++SR + L+D +A GL+D +G Sbjct: 184 GFTTAHREAVTRMLESLQEQTWRAIAQSRKLDPGALDTLADRAPLLRDDAVAAGLLDRIG 243 Query: 229 GQEEVWQSLYALGVDQ 244 ++E + + + Sbjct: 244 FRDEAYARIAEMAGAP 259 >gi|329961656|ref|ZP_08299715.1| signal peptide peptidase SppA [Bacteroides fluxus YIT 12057] gi|328531648|gb|EGF58482.1| signal peptide peptidase SppA [Bacteroides fluxus YIT 12057] Length = 589 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 68/267 (25%), Positives = 130/267 (48%), Gaps = 13/267 (4%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQIEDSQE------------LIERIERISRDDSATAL 69 +V ++ + + +A G+I+ +I+ + ++ D++ A+ Sbjct: 290 MVNVKKNAPKDKSGNVIAVYYAYGEIDGGTSSSTGEEGINSVKVIKDLRKLKEDENVKAV 349 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 ++ ++SPGGSAY E I+ A+ ++K KPVI + + AAS GY ISC ++ IVA T+L Sbjct: 350 VLRVNSPGGSAYGSEQIWYAVSELKKEKPVIVSMGDYAASGGYYISCNADTIVAEPTTLT 409 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIG+ +P K DK+G++ VK++ +N +MQ V+ Y F Sbjct: 410 GSIGIFGMFPNAKGLTDKIGLNFDVVKTNQYADFGMLTRPMNDGEKGLMQMYVNQGYDLF 469 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 + S+ R I ++ ++ GR+WTG+ AK++GL+D +GG ++ + A + Sbjct: 470 LTRCSDGRGIGKEELDKIAQGRVWTGSTAKELGLVDELGGLDKAVEIAIAKSGV-DAYTV 528 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTI 276 + +++ + + + Sbjct: 529 MSYPKKESFLESLMNTNPGKYVKARML 555 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 103/277 (37%), Gaps = 29/277 (10%) Query: 1 MEFVLKKIKTRYV---MLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQIE------ 48 ++F L I V ++ +++ V + SS + + + + G + Sbjct: 5 LKFTLATITGLIVTGVIVFFISILVFFSMVSSSESETQIRKNSIMMLDLNGALAERSQEN 64 Query: 49 -------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95 +++ I++ ++ + + +S + E I A++ K Sbjct: 65 PFEFLLDDEYSTYGLDDILSSIKKAKENEEIKGIYIQATSLATGFASLEEIRSALKDFKE 124 Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 I + + Y +S ++ ++ ++ G+ + K L K+GV ++ Sbjct: 125 SGKFIVAYGDTYSQGLYYLSSVADKVLLNPQGMIEWRGLAAAPMFFKDLLAKIGVEMQVF 184 Query: 156 KSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 K K+ PF +E++P + + + S + V+ESR + D ++D I Sbjct: 185 KVGTYKSAVEPFVSTEMSPANREQVNVYLASIWGQLTSDVAESRKVSVDSLNAIADRMIM 244 Query: 214 T--GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 E+ K GL D + + +V L A+ + Sbjct: 245 FHPAEESVKCGLADTLIYKNDVRNYLKAMAGIDEDDR 281 >gi|258624166|ref|ZP_05719116.1| Periplasmic serine protease [Vibrio mimicus VM603] gi|258583597|gb|EEW08396.1| Periplasmic serine protease [Vibrio mimicus VM603] Length = 319 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 68/284 (23%), Positives = 125/284 (44%), Gaps = 16/284 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSS----HVEDNSPHVARIAIRGQIE-----DSQELI 54 +L+ ++ +L ++ ++ + + +PH A I IRG+I D+ LI Sbjct: 34 MLRVLRASGFVLLMIGFIILASNPGGMPWQSAKAGAPHTAYINIRGEIAAGTLADTDHLI 93 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAG 111 I+ + ++ A+++ ++SPGGS I+ + + + K V + ++ AS G Sbjct: 94 PSIQAAFDNPNSQAIVLRINSPGGSPVQAGRIYDEVKAQRALHPEKKVYAIIDDIGASGG 153 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I A SLVGSIGV+ +DKLG+ +++ S KA PFS + Sbjct: 154 YYIASAADEIYADRASLVGSIGVISSGFGFTGLMDKLGIERRAITSGEHKALLDPFSPLT 213 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + + V+ ++ F+ V R + G +W G +AK +GLID +G Sbjct: 214 SDMKKFWEGVLSKTHQQFIERVKAGRGDRLKDDPEVFSGLLWNGEQAKDIGLIDGLGSLN 273 Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 V + + +D L SS +++ Sbjct: 274 SVARDVIHQSNLVDYTPTEDIIRR----LTQRAKLEASSFVQEL 313 >gi|118602039|ref|YP_908739.1| peptidase [Photobacterium damselae subsp. piscicida] gi|118614779|ref|YP_908562.1| peptidase [Photobacterium damselae subsp. piscicida] gi|134044555|ref|YP_001101707.1| signal peptide peptidase SppA domain-containing protein [Yersinia ruckeri] gi|134044941|ref|YP_001102082.1| signal peptide peptidase SppA domain-containing protein [Yersinia pestis biovar Orientalis str. IP275] gi|134047167|ref|YP_001101892.1| signal peptide peptidase SppA domain-containing protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|229516096|ref|ZP_04405546.1| hypothetical protein VCC_000110 [Vibrio cholerae RC9] gi|300925750|ref|ZP_07141608.1| putative signal peptide peptidase SppA [Escherichia coli MS 182-1] gi|118596870|dbj|BAF38174.1| peptidase [Photobacterium damselae subsp. piscicida] gi|118597048|dbj|BAF38351.1| peptidase [Photobacterium damselae subsp. piscicida] gi|133904918|gb|ABO40935.1| signal peptide peptidase SppA domain protein [Yersinia ruckeri] gi|133905086|gb|ABO41101.1| signal peptide peptidase SppA domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|133905475|gb|ABO42237.1| signal peptide peptidase SppA domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|229346876|gb|EEO11844.1| hypothetical protein VCC_000110 [Vibrio cholerae RC9] gi|300418172|gb|EFK01483.1| putative signal peptide peptidase SppA [Escherichia coli MS 182-1] gi|324007588|gb|EGB76807.1| putative signal peptide peptidase SppA [Escherichia coli MS 57-2] Length = 325 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 68/284 (23%), Positives = 125/284 (44%), Gaps = 16/284 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSS----HVEDNSPHVARIAIRGQIE-----DSQELI 54 +L+ ++ +L ++ ++ + + +PH A I IRG+I D+ LI Sbjct: 40 MLRVLRASGFVLLMIGFIILASNPGGMPWQSAKAGAPHTAYINIRGEIAAGTLADADHLI 99 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAG 111 I+ + ++ A+++ ++SPGGS I+ + + + K V + ++ AS G Sbjct: 100 PSIQAAFDNPNSQAIVLRINSPGGSPVQAGRIYDEVKAQRALHPEKKVYAIIDDIGASGG 159 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I A SLVGSIGV+ +DKLG+ +++ S KA PFS + Sbjct: 160 YYIASAADEIYADRASLVGSIGVISSGFGFTGLMDKLGIERRAITSGEHKALLDPFSPLT 219 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + + V+ ++ F+ V R + G +W G +AK +GLID +G Sbjct: 220 SDMKKFWEGVLSKTHQQFIERVKAGRGDRLKDDPEVFSGLLWNGEQAKDIGLIDGLGSLN 279 Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 V + + +D L SS +++ Sbjct: 280 SVARDVIHQSNLVDYTPTEDIIRR----LTQRAKLEASSFVQEL 319 >gi|157828572|ref|YP_001494814.1| protease IV [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933286|ref|YP_001650075.1| signal peptide peptidase [Rickettsia rickettsii str. Iowa] gi|2944013|gb|AAC05202.1| putative protease IV [Rickettsia rickettsii str. 'Sheila Smith'] gi|2970341|gb|AAC05973.1| putative protease IV [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801053|gb|ABV76306.1| protease IV [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908373|gb|ABY72669.1| signal peptide peptidase [Rickettsia rickettsii str. Iowa] Length = 304 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 78/298 (26%), Positives = 152/298 (51%), Gaps = 15/298 (5%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSW-----------SSHVEDNSPHVARIAIRGQIEDSQEL 53 ++IK+R ++ L + ++ + + N ++A + I I + ++ Sbjct: 11 RRQIKSRLLIWKLAAIILIAIVFLLVGKDFAPKEVLPINSNEDYIASVLIDEIILEDEKR 70 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 +++++I D ALIV+++SPGG+ E I+ ++K+ +KPV+ + MAAS GYL Sbjct: 71 DKKLKKIIDDSHIKALIVNVNSPGGTVVGAEKIYNILRKISAKKPVVIVMGTMAASGGYL 130 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 IS + I++ ++ GSIGV+ Q V KLG+ + KS +KA P+P ++ Sbjct: 131 ISLGGDYIISHNGTITGSIGVILQTAEVTELAQKLGIKFNNFKSGELKAVPNPTEKLTEA 190 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 + D ++ +Y++F+ LVSE RN+P ++ L+DGR+++G +A K+ L+D +G ++ Sbjct: 191 VRVAIMDNIEDTYNFFLELVSERRNLPIEEVKKLADGRVYSGRQALKLKLVDAIGSEDTA 250 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 + L + +KD+ D+ S+ P + G+ A++ Sbjct: 251 LKWLQEVQKINVNLLVKDYQLKPKPTLMDIILEDFDSIA----PSFFKNSFNGIKAIF 304 >gi|300704627|ref|YP_003746230.1| peptidase s49 [Ralstonia solanacearum CFBP2957] gi|299072291|emb|CBJ43624.1| Peptidase S49 [Ralstonia solanacearum CFBP2957] Length = 350 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 72/291 (24%), Positives = 129/291 (44%), Gaps = 15/291 (5%) Query: 7 KIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60 +I R+V L ++ + F S+ + H A +A+ G+I ++ + +E Sbjct: 64 RIFFRFVTLGILGGLLYLFASFEGETVGSGRHTAVVALDGEIAANTNASAENINASLEAA 123 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCA 117 DD+ +I+ ++SPGGS I I++++ + I V EM AS GY ++ A Sbjct: 124 FADDNTAGVILKINSPGGSPVQAGMINDDIRRLRAKHKDIPLYVVVEEMCASGGYYVAAA 183 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 ++ I + S+VGSIGVL +DK+GV + + + K PFS V P+ Q Sbjct: 184 ADKIYVDKASIVGSIGVLMDGFGFTGLMDKVGVERRLLTAGANKGMLDPFSPVPPQQRQF 243 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 Q ++D + F+ +V + R L G WTG++A ++GL D VG + V + Sbjct: 244 AQAMLDEVHQQFIDVVKQGRGSRLKDDPQLFSGLFWTGSKAVELGLADGVGSADFVAR-- 301 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + D+ +N+ + + L +++ L Sbjct: 302 ----NVIKAPDMVDYTVKENFAERVARKFGTAMGAGAIKALAATGQLKLLM 348 >gi|311695110|gb|ADP97983.1| family S49 unassigned peptidase [marine bacterium HP15] Length = 347 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 60/286 (20%), Positives = 122/286 (42%), Gaps = 17/286 (5%) Query: 8 IKTRYVMLSLVTLTVVYFSW---SSHVEDNSPHVARIAIRGQIE-----DSQELIERIER 59 I +++ + + + S H A + I G I + ++ + Sbjct: 64 IFFKFLTFGYLIALLFLIKFPLGDSLEGVTGKHTALVEINGPIAADELASADNIVGSLRT 123 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISC 116 + ++ A+I+ ++SPGGS ++ I+++ K V + ++ AS Y I+ Sbjct: 124 AFEEPNSVAVILRINSPGGSPVQSGYVYDEIKRLREEYPEKKVYAVISDIGASGAYYIAA 183 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 A++ I A SLVGSIGV+ ++K+GV + + KA PFS + V Sbjct: 184 AADEIYANRASLVGSIGVVAGGFGFTEVMEKIGVDRRLYTAGENKAFLDPFSPEQEEEVT 243 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q V+++++ F+ V + R L G +W+G +A ++GL D +G V + Sbjct: 244 FWQSVLENTHQQFIEAVKQGRGDRLADDERLFSGLVWSGEQAVELGLADGLGSASHVARQ 303 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282 + ++ D++ K+ + + L ++ L++ Sbjct: 304 IIGQ------EELVDYSRRKSPFQDIVDQLGVAFGEGFASQLVESR 343 >gi|153826825|ref|ZP_01979492.1| protease IV [Vibrio cholerae MZO-2] gi|149739346|gb|EDM53592.1| protease IV [Vibrio cholerae MZO-2] Length = 616 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 14/287 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 + + ++ +A + G I D + + D + A Sbjct: 307 IGYYEYKTTIKPTTLTDANDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I I+ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + L+ LG+ V ++P + + + A +Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGLTTGLTQGAKDAIQLGIEHGYQ 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F+ LV+E R + L+ GR+WT +A+ +GL+D +G ++ L + Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + +++ P + DL SL D + + +Q L W Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSTLLPKSLQPLAVEWQ 591 Score = 90.4 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 100/284 (35%), Gaps = 37/284 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51 + F+ + +LS+ + +Y + + A + + G I + Sbjct: 19 ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 +++E + D++ T L+++ P + I +AI + Sbjct: 79 FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203 + K+ PF +++ A + + + +V V+ +R I + Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEEF 258 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 L + A +KKVGL+D + +++V Q+L Sbjct: 259 VAQLKEVNGDLAALSKKVGLVDELATRQQVCQTLAETFGSDGKD 302 >gi|149275724|ref|ZP_01881869.1| protease IV [Pedobacter sp. BAL39] gi|149233152|gb|EDM38526.1| protease IV [Pedobacter sp. BAL39] Length = 591 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 63/252 (25%), Positives = 110/252 (43%), Gaps = 11/252 (4%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSS 75 + ++ + +A I G+I S+ + I + D S A+++ ++S Sbjct: 298 IATTNKSKSGKNKIAVIYANGEITGGEGSDEQIGSERISRTIRKARSDSSVKAIVLRVNS 357 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 PGGSA A + I+R I K KPVI +AAS GY I CA++ I ++ GSIGV Sbjct: 358 PGGSALASDVIWREIVLAKKVKPVIASFGNVAASGGYYIGCAADSIFVQPNTITGSIGVF 417 Query: 136 FQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 P + L +LG++ VK+ S + ++Q+ V+ +Y F+ V+ Sbjct: 418 GVIPNFQKLLNKELGITFDGVKTGTYADIMSVNRPLTAGERFIIQNEVNRTYDGFITRVA 477 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + R + GR+W G +A ++GL D G + + + K+ ++ Sbjct: 478 DGRKRSKSYIDSIGGGRVWVGTDAVRLGLADRTGSFNDAITAAVKKAKLKE-YKVVEYPE 536 Query: 255 PKNYWFCDLKNL 266 N + N Sbjct: 537 VINPLKSLMDNG 548 Score = 95.8 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 49/286 (17%), Positives = 111/286 (38%), Gaps = 37/286 (12%) Query: 1 MEFVLKKIKT-------RYVMLSLVTLTVVY-----FSWSSHVEDNSPHVARIAIRGQIE 48 M+ K + +V+++++ + +V S VE S V + + I Sbjct: 1 MKDFFKYVFATVVGIVVSFVLITILAILIVVGMVSSISDDKTVEVKSNSVLFLNLDQNIT 60 Query: 49 ----------------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 ++I+ ++ D++ + +++SSP + I Sbjct: 61 ERTISDPLADLPYIGGDDAKSIGFTDIIKALDAAKTDNNIRCVYLNVSSPNAGFANMKEI 120 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 A+ + + I E+ + Y ++ A++ I + G+ + + K L+ Sbjct: 121 RDAMIDFRKSRKKIIAYSEVYSQGAYYLASAADKIYLNPEGALEFKGLSSEIMFFKGALE 180 Query: 147 KLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 KLG+ + ++ K+ PF +++ K + + ++ Y F+ +S SR I D Sbjct: 181 KLGIEAQIIRVGTYKSAVEPFINDKMSDKNREQVTVYLNGLYRTFLGGISASREIDADSL 240 Query: 205 LVLSDG-RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 ++D +I +A K L+D + +++V + L L I Sbjct: 241 YAIADQYKIQQPNDALKYKLVDQLAYKDKVLEELKKLSDTDPSDNI 286 >gi|118616594|ref|YP_904926.1| protease IV, Ssp [Mycobacterium ulcerans Agy99] gi|118568704|gb|ABL03455.1| protease iv, Ssp [Mycobacterium ulcerans Agy99] Length = 600 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 65/275 (23%), Positives = 119/275 (43%), Gaps = 17/275 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70 S P +A +++ G I + + + DD +A++ Sbjct: 298 PSIPGRRGKPTIAVVSVEGPIVNGRGGPQGLPLGPSSAGGDTIASALGETAADDEVSAIV 357 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + + SPGGS A E I+R +Q+ ++R K V+ + +AAS GY +S ++ IVA ++ Sbjct: 358 LRVDSPGGSVTASETIWREVQRARDRGKSVVASMGSIAASGGYYVSMGADAIVANPGTIT 417 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ V+ D+LGV ++++++ S + + + D Y F Sbjct: 418 GSIGVITGKLVVRDLKDRLGVGSETLRTNANADAWSIDAPFTDEQRARREAEADMFYTDF 477 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V+ RN+ + ++ GR+WTGA+A + GL+D +GG L ++ Sbjct: 478 AERVARGRNLRTEDVDAVARGRVWTGADALERGLVDELGGFRTAVPRAKVLAGLDEDTEV 537 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + P + L S + ++P V Sbjct: 538 RPVGYPGSLLLDLLWPRGSSRPVAASVPEAVGALV 572 Score = 89.3 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 76/200 (38%), Gaps = 2/200 (1%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 ++ + + R + D LI + P A +A+ AI KP + + Sbjct: 69 RDAVAALHRGAEDPRVGGLIARVQLPPAPIGAVQALREAIAAFSAVKPSVAWAETYPGTL 128 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169 Y ++ A I + G IG ++ LDK+G+ + V K+ F+E Sbjct: 129 SYYLATAFREIWMQPSGEAGLIGFASNAMFLCDALDKVGIEAQFVARGEYKSAADLFTED 188 Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 + + +++S V++SR I L+D EA GLID +G Sbjct: 189 GYTDANREAVTRMLESLQDQAWHAVAQSRQIDAGVLDELADKAPLLRDEALSSGLIDRIG 248 Query: 229 GQEEVWQSLYALGVDQSIRK 248 ++E + + L + + Sbjct: 249 FRDEAYARIAELARVEGVSP 268 >gi|120554791|ref|YP_959142.1| peptidase S49 [Marinobacter aquaeolei VT8] gi|120324640|gb|ABM18955.1| peptidase S49 [Marinobacter aquaeolei VT8] Length = 349 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 61/290 (21%), Positives = 126/290 (43%), Gaps = 19/290 (6%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDN-----SPHVARIAIRGQIE-----DSQELIE 55 ++ + +L+ L + F + + H A + + G I + L+ Sbjct: 62 RRWGIFFKLLTFGYLFALLFMIRAPFGEGVGATVGSHTALVEVNGPIAADELASADNLVG 121 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGY 112 + +S+ A+++ ++SPGGS ++ I+++ K + + ++ AS Y Sbjct: 122 ALRAAFEAESSKAVVLRINSPGGSPVQSGYVYDEIKRLREEYPDKKIYAVISDIGASGAY 181 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 I+ A++ I A SLVGSIGV+ ++K+GV + + KA PFS Sbjct: 182 YIAAAADEIYANRASLVGSIGVVAGGFGFTEAMEKIGVDRRLYTAGDNKAFLDPFSPEQE 241 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 + V Q V+++++ F+ V + R L G +W+G +A ++GL+D +G Sbjct: 242 EEVAFWQSVLENTHKQFIEAVRQGRGDRLADDPRLFSGLVWSGEQAVELGLVDGLGSSSW 301 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282 V + L ++ D++ ++ + + L ++ LM+ Sbjct: 302 VARQLVG------EEELVDYSRSRSPFQEFVDQLGVAVGEGVATRLMESR 345 >gi|319902957|ref|YP_004162685.1| signal peptide peptidase A [Bacteroides helcogenes P 36-108] gi|319417988|gb|ADV45099.1| signal peptide peptidase A [Bacteroides helcogenes P 36-108] Length = 591 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 71/257 (27%), Positives = 130/257 (50%), Gaps = 14/257 (5%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATA 68 +V + + + +A G+I +S+++I+ + ++ D A Sbjct: 291 MVNIKKNVPKDKSGNVIAIYYAYGEIDGGSSSTLTGEEGINSEKVIKDLRKLKDDKDVKA 350 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 +++ ++SPGGSAY E I+ A+ ++K +KPVI + + AAS GY ISC ++ IVA T+L Sbjct: 351 VVLRVNSPGGSAYGSEQIWYAVSELKKKKPVIVSMGDYAASGGYYISCNADTIVAEPTTL 410 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIG+ +P K DK+G+S VK++ +N ++Q ++ Y Sbjct: 411 TGSIGIFGMFPNAKGLADKIGISFDVVKTNRYSDFGMITRPMNEGEKGLLQMYINQGYDT 470 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 F+ SE R I ++ ++ GR+WTG++AK++GL+D +GG + + A Sbjct: 471 FLARCSEGRGISKEELDKIAQGRVWTGSKAKELGLVDELGGIDRALEIAIAKAG-TDTYT 529 Query: 249 IKDWNPPKNYWFCDLKN 265 I + +N+ + + Sbjct: 530 IMSYPKKENFLESFMNS 546 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 102/278 (36%), Gaps = 30/278 (10%) Query: 1 MEFVLKKIKTRY---VMLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQIE------ 48 ++F L I ++L +++ V + SS + + + + G + Sbjct: 5 LKFTLATITGIIVSSIILFFISILVFFSIVSSSDSETQVRKNSIMMLDLNGMLAERTQEN 64 Query: 49 -------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVK 94 +++ I++ + + + S GG+++A E I +++ K Sbjct: 65 PFDFLLGDEYNTYGLDDILSSIKKAKENADIKGIYIQACSLGGASFASLEEIRNSLKDFK 124 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 I + + Y +S ++ ++ V G+ + K L K+GV ++ Sbjct: 125 ESGKFIVAYGDTYTQSLYYLSSIADKVLLNPKGAVEWKGLAASPMFFKDLLGKIGVEMQI 184 Query: 155 VKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-- 210 K K+ PF +E++P + + + S + + V+ SR I D ++ Sbjct: 185 FKVGTYKSAVEPFISTEMSPANREQVNAYLASIWKQIMGDVATSRKISVDSLNAAANSML 244 Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + K GL D + + +V L + + K Sbjct: 245 MFYPAERCVKAGLADTLIYKNDVRNYLKTMAGIEENDK 282 >gi|298385314|ref|ZP_06994873.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 1_1_14] gi|298262458|gb|EFI05323.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 1_1_14] Length = 593 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 72/273 (26%), Positives = 133/273 (48%), Gaps = 13/273 (4%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRD 63 L ++ + + + VA G+I D ++I + ++ D Sbjct: 287 VLGLSDMINVKKNMPKDKSGNIVAVYYASGEITDYSSSSTSEEGIVGTKVIRDLRKLKDD 346 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 + A+++ ++SPGGSA+A E I+ A++++K KPVI + + AAS GY ISC ++ IVA Sbjct: 347 EDVKAVVLRVNSPGGSAFASEQIWHAVKELKTEKPVIVSMGDYAASGGYYISCVADTIVA 406 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 T+L GSIG+ P VK +K+G++ VK++ + N +MQ ++ Sbjct: 407 EPTTLTGSIGIFGMVPNVKELSEKIGLTYDVVKTNKFSDFGNIMRPFNQDEKTLMQMMIT 466 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 Y FV +E R++ + +++GR+WTG AK++GL+DV+GG + + Sbjct: 467 QGYDTFVNRCAEGRHMSKEAIEKIAEGRVWTGEAAKELGLVDVLGGIDTALEIAVRKAGI 526 Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 + + + ++ L ++ +E I Sbjct: 527 EG-YTVVSYPAKQDLLSSLLNTKPTNNYVESQI 558 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 98/264 (37%), Gaps = 26/264 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49 ++ +VTL + + + V + + G + Sbjct: 22 LFIIGMVTLFGIVSTADTETIVKKNSVMMLDLNGVLVERTQESPLGILSQLFSDDSNTYG 81 Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 +++ I++ +++ + + S G S + + I A+ K I + Sbjct: 82 LDDILSSIKKAKENENIKGIYLQASMLGTSYASLQEIRNALLDFKESGKFIIAYGDSYTQ 141 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y +S ++ ++ ++ G+ + K L K+GV ++ K K+ PF Sbjct: 142 GLYYLSSVADKVLLNPKGMIEWKGIASAPLFYKDLLQKIGVEMQIFKVGTYKSAVEPFIS 201 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225 +E++P + + ++S + VS SR++P D L+D + E+ + GL D Sbjct: 202 TEMSPANREQVTAFINSIWGQVTEGVSASRSLPVDSLNALADRMLMFYPAEESVQCGLAD 261 Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249 + + +V L + ++ Sbjct: 262 TLIYRNDVRNYLKQWVDLKEDDRL 285 >gi|293405264|ref|ZP_06649256.1| protease 4 [Escherichia coli FVEC1412] gi|298380907|ref|ZP_06990506.1| protease IV [Escherichia coli FVEC1302] gi|300898997|ref|ZP_07117286.1| signal peptide peptidase SppA [Escherichia coli MS 198-1] gi|291427472|gb|EFF00499.1| protease 4 [Escherichia coli FVEC1412] gi|298278349|gb|EFI19863.1| protease IV [Escherichia coli FVEC1302] gi|300357394|gb|EFJ73264.1| signal peptide peptidase SppA [Escherichia coli MS 198-1] Length = 666 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 367 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 426 Query: 80 AYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 427 VTASEVIRAELAAARSAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 486 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 487 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 545 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 546 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 604 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 605 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 633 Score = 100 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 67 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 126 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 127 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 186 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 187 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 246 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 247 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 306 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 307 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 354 >gi|254992106|ref|ZP_05274296.1| hypothetical protein LmonocytoFSL_02749 [Listeria monocytogenes FSL J2-064] Length = 337 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 134/280 (47%), Gaps = 19/280 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76 E + +A +++ G I+D+ + ++++E++ DD+ +++ ++SP Sbjct: 56 EEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLEQVRNDDNIQGVLLYVNSP 115 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG I I +++ + P + MAAS GY IS ++ I A++ +L GS+GV Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + Q + KLGVS ++KS K S + ++MQ ++D SY+ FV++V+ Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + R + ++ ++DGRI+ G +AK+ GLID G QE+ ++L I+ P Sbjct: 236 QGRGMTVEQVHKIADGRIYDGRQAKENGLIDEFGYQEDALEALKKEQGLAGATVIQYDAP 295 Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291 + IS + + I L K + ++ Sbjct: 296 GDFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYLY 335 >gi|325299675|ref|YP_004259592.1| signal peptide peptidase SppA, 67K type [Bacteroides salanitronis DSM 18170] gi|324319228|gb|ADY37119.1| signal peptide peptidase SppA, 67K type [Bacteroides salanitronis DSM 18170] Length = 588 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 69/272 (25%), Positives = 126/272 (46%), Gaps = 13/272 (4%) Query: 30 HVEDNSPHVARIAIRGQIEDSQ----------ELIERIERISRDDSATALIVSLSSPGGS 79 + + +A G I + ++ + + R+ D+S A++ ++SPGGS Sbjct: 299 PKDKSGNVLAVYYATGTIGSGELSADEGIHPEKVAKDLRRLREDESVKAVVFRVNSPGGS 358 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A+ E I+R I +K +KPVI + + AAS GY I+CA++ I+A T+L GSIG+ P Sbjct: 359 AFGSEEIWREITLLKEQKPVIVSMGDYAASGGYYIACAADWIIAQPTTLTGSIGIFGYIP 418 Query: 140 YVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L DKLG+ VK++ + + +MQ++V+ Y F + ++ R Sbjct: 419 NAEKLLNDKLGIHFDGVKTNKLSDLGDISRPFTEEETALMQNMVNHGYELFTQRCADGRK 478 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 +P D+ +++GR+WTG AK + L+D +GG + ++ P + Sbjct: 479 MPVDEIKRIAEGRVWTGKMAKDLKLVDELGGIDRAIAVAAERAEIENYT--VMSYPKQED 536 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 +F L + L + + + Sbjct: 537 FFSSLLSSGTDRYLSARLKAELGALYEPFRYL 568 Score = 99.3 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 106/283 (37%), Gaps = 34/283 (12%) Query: 1 MEFVLKKIKTR----------YVMLSLVTL-TVVYFSWSSHVEDNSPHVARIAIRGQIE- 48 M+ LK + + ++ ++++ +V S S + + V + ++G +E Sbjct: 1 MKDFLKYMLAAIVGVCIVGVVFAIIGVMSIAGMVASSSGSETKVSDNSVFILNLKGSVEE 60 Query: 49 ------------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 +++ I++ ++ + + + + E I A+ Sbjct: 61 RVQPNPLSQLVGEEFGTYGLDDILGSIKKAKDNEKIKGICLDAGAFVCPPASLEEIRNAL 120 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 + K I + Y ++ ++ + +G G+ Q ++K LDK+GV Sbjct: 121 KDFKESGKFIVAYGGNYLQSTYYLASVADKVAINPQGSLGWHGLATQTYFLKDLLDKIGV 180 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 ++ + K+ P+ +E++P + Q +S + V V+ SR IP D L+ Sbjct: 181 EMQIFRVGTYKSAVEPYTSTEMSPANREQTQAFANSIWGQMVDEVAASRRIPADSLNALA 240 Query: 209 DGRIWT--GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 D + K GL D + Q+E+ L L + Sbjct: 241 DRNMDLQPAELYIKTGLADTLMYQDEMLAYLKQLTETDEDDAL 283 >gi|319763864|ref|YP_004127801.1| peptidase s49 [Alicycliphilus denitrificans BC] gi|330823872|ref|YP_004387175.1| peptidase S49 [Alicycliphilus denitrificans K601] gi|317118425|gb|ADV00914.1| peptidase S49 [Alicycliphilus denitrificans BC] gi|329309244|gb|AEB83659.1| peptidase S49 [Alicycliphilus denitrificans K601] Length = 346 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 67/287 (23%), Positives = 123/287 (42%), Gaps = 14/287 (4%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIER 59 + +++L ++ V + ++PH A + ++G+I ++ ++ + Sbjct: 65 RNFWRFGWLVLIVLVGWAVVSRDIASPAKSAPHTAVVDVKGEIAAGAEASAEFVVAAMRS 124 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCA 117 D + A+++ ++SPGGS I I ++K + KPV V E ASA Y I+ A Sbjct: 125 AFEDSGSQAVVLLINSPGGSPVQAGMINDEIVRLKAKYNKPVYAVVEETCASAAYYIAAA 184 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 ++ I + S+VGSIGVL ++KLGV + + + K PFS +P Sbjct: 185 ADDIFVDKASIVGSIGVLMDGFGFTGTMEKLGVERRLLTAGENKGFLDPFSPQSPTQRGY 244 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 Q ++D + F+ V + R T G WTG +A ++GL D G + V + + Sbjct: 245 AQQMLDQIHQQFIAAVKKGRGERLKATPETFSGLFWTGQQAVEMGLADQFGSLDYVAREI 304 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + D+ N + ++ E + M+ V Sbjct: 305 VK------AEDVIDYTRRDNVAERLARKFG-ATFGETVLRGMRAAPV 344 >gi|58580196|ref|YP_199212.1| protease IV [Xanthomonas oryzae pv. oryzae KACC10331] gi|58424790|gb|AAW73827.1| protease IV [Xanthomonas oryzae pv. oryzae KACC10331] Length = 642 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 68/278 (24%), Positives = 120/278 (43%), Gaps = 11/278 (3%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVS 72 + D+ P VA + G+I + + + D+ A+++ Sbjct: 329 LSQLQAQDSPMDSRPQVAVVVATGEISGGEQPAGRIGGESTAALLRQARDDEKVKAVVLR 388 Query: 73 LSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 + SPGG +A E I R + + + KPV+ + ++AAS GY IS ++ I A +++ GS Sbjct: 389 VDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGS 448 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IG+ P + LDK+GV V ++ ++P A Q++Q V++ Y F Sbjct: 449 IGIFGMVPNLTRALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTG 508 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 V+++R+ D ++ GR+W+GA+AK+ GL+D GG E + Sbjct: 509 KVAQARHQSVDAIDKVARGRVWSGAQAKERGLVDAFGGMSEAVADAADRAKLSRGKFRVR 568 Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + F N S + + L + L A Sbjct: 569 YVEKPATPFSQFMNGFAGSRMGAWM-LSDSGMARALVA 605 Score = 70.4 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 98/288 (34%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRGQIEDS------ 50 M F + I L L +V+ + + P I G + + Sbjct: 30 MNFTRRLIFNLVFFGFLFMLLLVFVVALARGDGTKPLAERTTLVINPEGTLVEQFSADPV 89 Query: 51 ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQ 91 ++L+ IE +D ++++L S +A + + A+Q Sbjct: 90 SRSLAKAVGDKSAQEVQLRDLVRVIEAAGKDRKIERVLLNLDKFQPSGFASQREVAAALQ 149 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGV 150 K++ I E + YL++ +N + V G+ ++ + + DKLGV Sbjct: 150 KLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGV 209 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 + + K+ P+ + A + ++ + ++ V +R + + Sbjct: 210 DVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWQRYLADVVTARKLSPAQLTAGI 269 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 ++ A + L+D + +EEV L GV S + Sbjct: 270 DTLPEGVAAAGGDLAKFALQQKLVDGLKTREEVDALLVKRGVADSDAE 317 >gi|309796456|ref|ZP_07690864.1| putative signal peptide peptidase SppA [Escherichia coli MS 145-7] gi|308119961|gb|EFO57223.1| putative signal peptide peptidase SppA [Escherichia coli MS 145-7] Length = 325 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 67/284 (23%), Positives = 126/284 (44%), Gaps = 16/284 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSS----HVEDNSPHVARIAIRGQIE-----DSQELI 54 +L+ ++ +L ++ ++ + + +PH A I IRG+I D+ LI Sbjct: 40 MLRVLRASGFVLLMIGFIILASNPGGMPWQSAKAGAPHTAYINIRGEIAAGTLADADHLI 99 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAG 111 I+ + ++ A+++ ++SPGGS I+ + + + K V + ++ AS G Sbjct: 100 PSIQAAFDNPNSQAVVLRINSPGGSPVQAGRIYEEVKAQRALHPEKKVYAIIDDIGASGG 159 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I A SLVGSIGV+ +D+LG+ +++ S KA PFS + Sbjct: 160 YYIASAADEIYADRASLVGSIGVISSGFGFTGLMDRLGIERRAITSGEHKALLDPFSPLT 219 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + + V+ ++ F+ V R + G +W G +AK++GLID +G Sbjct: 220 SDMKKFWEGVLSKTHQQFIERVKAGRGDRLKDAPEVFSGLLWNGEQAKEIGLIDGLGSLN 279 Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 V + + +D L SS +++ Sbjct: 280 SVARDVIHQSNLVDYTPTEDIIRR----LTQRAKLEASSFVQEL 319 >gi|170768773|ref|ZP_02903226.1| protease 4 [Escherichia albertii TW07627] gi|170122321|gb|EDS91252.1| protease 4 [Escherichia albertii TW07627] Length = 618 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRSELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ L+ +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R Sbjct: 439 TTVENSLNSIGVHTDGVSTSPLAD-ISITKALPPEAQQMMQLSIENGYKRFITLVADARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPETFQAMLPAPLA 585 Score = 99.3 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 101/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S S E + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSNSDTKETAGRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 RLSRQLLGASSDRRQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + + E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAIGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A L+D + E+ ++L K Sbjct: 259 QGLLDGLTKTGGDTAKYALDNKLVDALASSAEIEKALTKEFGWNKADK 306 >gi|15892681|ref|NP_360395.1| protease IV [Rickettsia conorii str. Malish 7] gi|15619853|gb|AAL03296.1| protease IV [Rickettsia conorii str. Malish 7] Length = 304 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 78/298 (26%), Positives = 152/298 (51%), Gaps = 15/298 (5%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSW-----------SSHVEDNSPHVARIAIRGQIEDSQEL 53 ++IK+R ++ L + ++ + + N ++A + I I + ++ Sbjct: 11 RRQIKSRLLIWKLAAIILIAIVFLLVGKDFAPKEVLPINSNEDYIASVLIDEIILEDEKR 70 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 +++++I D ALIV+++SPGG+ E I+ ++K+ +KPV+ + MAAS GYL Sbjct: 71 DKKLKKIIDDSHIKALIVNVNSPGGTVVGAEKIYNILRKISAKKPVVIVMGTMAASGGYL 130 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 IS + I++ ++ GSIGV+ Q V KLG+ + KS +KA P+P ++ Sbjct: 131 ISLGGDYIISHNGTITGSIGVILQTAEVTELAQKLGIKFNNFKSGELKAVPNPTEKLTEA 190 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 + D ++ +Y++F+ LVSE RN+P ++ L+DGR+++G +A K+ L+D +G ++ Sbjct: 191 VRVAIMDNIEDTYNFFLELVSERRNLPIEEVKKLADGRVYSGRQALKLKLVDAIGSEDTA 250 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 + L + +KD+ D+ S+ P + G+ A++ Sbjct: 251 LKWLQEVQKINVNLLVKDYQLKPKPKLMDIILEDFDSIA----PSFFKNSFNGIKAIF 304 >gi|34581630|ref|ZP_00143110.1| protease IV [Rickettsia sibirica 246] gi|28263015|gb|EAA26519.1| protease IV [Rickettsia sibirica 246] Length = 304 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 74/292 (25%), Positives = 146/292 (50%), Gaps = 10/292 (3%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWS------SHVEDNSPHVARIAIRGQIEDSQELIERIER 59 + + + + L+ + + + N ++A + I I + ++ +++++ Sbjct: 17 RLLIWKLTAIILIAIVFLLVGKDFAPKEVLPINSNEDYIASVLIDEIILEDEKRDKKLKK 76 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119 I D ALIV+++SPGG+ E I+ ++K+ +KPV+ + MA S GYLIS + Sbjct: 77 IIDDSHIKALIVNVNSPGGTVVGAEKIYNILRKISAKKPVVIVMGTMATSGGYLISLGGD 136 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 I++ ++ GSIGV+ Q V KLG+ + KS +KA P+P ++ + Sbjct: 137 YIISHNGTITGSIGVILQTAEVTELAQKLGIKFNNFKSGELKAVPNPTEKLTEAVRVAIM 196 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 D ++ +Y++F+ LVSE RN+P ++ L+DGR+++G +A K+ L+D +G ++ + L Sbjct: 197 DNIEDTYNFFLELVSERRNLPIEEVKKLADGRVYSGRQALKLKLVDAIGSEDTALKWLQE 256 Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 + +KD+ D+ S+ P + G+ A++ Sbjct: 257 VQKINVNLLVKDYQLKPKPKLMDIILEDFDSIA----PSFFKNSFNGIKAIF 304 >gi|84622191|ref|YP_449563.1| protease IV [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366131|dbj|BAE67289.1| protease IV [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 633 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 68/278 (24%), Positives = 120/278 (43%), Gaps = 11/278 (3%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVS 72 + D+ P VA + G+I + + + D+ A+++ Sbjct: 320 LSQLQAQDSPMDSRPQVAVVVATGEISGGEQPAGRIGGESTAALLRQARDDEKVKAVVLR 379 Query: 73 LSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 + SPGG +A E I R + + + KPV+ + ++AAS GY IS ++ I A +++ GS Sbjct: 380 VDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGS 439 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IG+ P + LDK+GV V ++ ++P A Q++Q V++ Y F Sbjct: 440 IGIFGMVPNLTRALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTG 499 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 V+++R+ D ++ GR+W+GA+AK+ GL+D GG E + Sbjct: 500 KVAQARHQSVDAIDKVARGRVWSGAQAKERGLVDAFGGMSEAVADAADRAKLSRGKFRVR 559 Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + F N S + + L + L A Sbjct: 560 YVEKPATPFSQFMNGFAGSRMGAWM-LSDSGMARALVA 596 Score = 70.0 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 97/288 (33%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRGQIEDS------ 50 M F + I L L +V+ + + P I G + + Sbjct: 21 MNFTRRLIFNLVFFGFLFMLLLVFVVALARGDGTKPLAERTTLVINPEGTLVEQFSADPV 80 Query: 51 ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQ 91 ++L+ IE +D ++++L S +A + + A+Q Sbjct: 81 SRSLAKAVGDKSAQEVQLRDLVRVIEAAGKDRKIERVLLNLDKFQPSGFASQREVAAALQ 140 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGV 150 K++ I E + YL++ +N + V G+ ++ + + DKLGV Sbjct: 141 KLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGV 200 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 + + K+ P+ + A + ++ + ++ V +R + + Sbjct: 201 DVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWQRYLADVVTARKLSPAQLTAGI 260 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 ++ A + L+D + +EEV L GV S Sbjct: 261 DTLPEGVAAAGGDLAKFALQQKLVDGLKTREEVDALLVKRGVADSDAD 308 >gi|301167932|emb|CBW27517.1| putative protease [Bacteriovorax marinus SJ] Length = 359 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 68/286 (23%), Positives = 130/286 (45%), Gaps = 14/286 (4%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPH---VARIAIRGQIEDSQELIERIERISRDD 64 +++ T TV F+ S V D+ +A I + G I ++E +E +E+ +D Sbjct: 63 FLFFVILMVFATFTVKVFNDESKVFDSQNKRGQIAVIEVSGPIMQAKETVELLEKAEKDK 122 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVK----------NRKPVITEVHEMAASAGYLI 114 S A+I+ ++SPGG+ + I+ I+++ + KP+ +AAS GY + Sbjct: 123 SVKAIILRINSPGGAVGPTQEIYEEIRRIDSAYNPEDKTASGKPIYASFDAIAASGGYYL 182 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 A+ I A+ +L GSIGV+ + + + V VK+ K SP + + Sbjct: 183 GAAARKIYASPGTLTGSIGVIMNFTDLSKVFEYFKVKQTPVKAGKYKDIGSPHRSMTNEE 242 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPY-DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 +M ++ + F+R + +R + L L+ G+I++G EAK++GL+D +G + Sbjct: 243 SGLMNKMIQVVHKQFMRDIEATRKEKLTKEILELAQGQIFSGEEAKELGLVDELGSLWKA 302 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 + ++ + +K K F DL + + + M Sbjct: 303 GRDIHKELNLEGEFALKYIKKKKKSGFWDLVDNLDQATTNIRLSTM 348 >gi|57239342|ref|YP_180478.1| putative protease IV [Ehrlichia ruminantium str. Welgevonden] gi|58579308|ref|YP_197520.1| putative protease IV [Ehrlichia ruminantium str. Welgevonden] gi|57161421|emb|CAH58345.1| putative peptidase [Ehrlichia ruminantium str. Welgevonden] gi|58417934|emb|CAI27138.1| Putative Protease IV [Ehrlichia ruminantium str. Welgevonden] Length = 289 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 82/261 (31%), Positives = 158/261 (60%), Gaps = 2/261 (0%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVED--NSPHVARIAIRGQIEDSQELIERIE 58 + LK +T ++ + L + + +S V + ++ ++A++ I G+IE ++E+ + ++ Sbjct: 12 LNSKLKLWRTLTFLVVFLMLILSNYVDTSSVSNFLDNEYIAKVNIEGKIETNEEMDKLLK 71 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 +I++D LI++++SPGG+ E +++ I+ V KPV+ +++ AAS GY+ + A+ Sbjct: 72 KIAKDTHIKGLILNINSPGGAVTGSEILYQNIRNVSKYKPVVALLNDFAASGGYMTAIAA 131 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I+A T++ GSIGVL QY V KLG+++KS+KSS +KA SPF E+ + Q + Sbjct: 132 DYIIARHTTITGSIGVLMQYFGVDQLAKKLGITLKSIKSSQLKAATSPFEELTQEKEQSV 191 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 + +++ SY++FV +V+E R + ++ L ++DG I+TG+EA +GL+D +GG++E + Sbjct: 192 RHIINDSYNYFVDIVAERRKMTKEQVLAIADGSIYTGSEALAIGLVDQIGGEDEALKWFS 251 Query: 239 ALGVDQSIRKIKDWNPPKNYW 259 + V K+ Sbjct: 252 SQNVKTQKINTLPIREHKSVL 272 >gi|15641996|ref|NP_231628.1| protease IV [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121730094|ref|ZP_01682498.1| protease IV [Vibrio cholerae V52] gi|147673256|ref|YP_001217520.1| protease IV [Vibrio cholerae O395] gi|153217088|ref|ZP_01950852.1| protease IV [Vibrio cholerae 1587] gi|153820012|ref|ZP_01972679.1| protease IV [Vibrio cholerae NCTC 8457] gi|153823324|ref|ZP_01975991.1| protease IV [Vibrio cholerae B33] gi|227082121|ref|YP_002810672.1| protease IV [Vibrio cholerae M66-2] gi|229507917|ref|ZP_04397422.1| protease IV [Vibrio cholerae BX 330286] gi|229511848|ref|ZP_04401327.1| protease IV [Vibrio cholerae B33] gi|229518984|ref|ZP_04408427.1| protease IV [Vibrio cholerae RC9] gi|229607462|ref|YP_002878110.1| protease IV [Vibrio cholerae MJ-1236] gi|254849080|ref|ZP_05238430.1| protease IV [Vibrio cholerae MO10] gi|255745257|ref|ZP_05419206.1| protease IV [Vibrio cholera CIRS 101] gi|262155982|ref|ZP_06029102.1| protease IV [Vibrio cholerae INDRE 91/1] gi|262167944|ref|ZP_06035644.1| protease IV [Vibrio cholerae RC27] gi|298497974|ref|ZP_07007781.1| signal peptide peptidase SppA, 67K type [Vibrio cholerae MAK 757] gi|9656536|gb|AAF95142.1| protease IV [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121628165|gb|EAX60694.1| protease IV [Vibrio cholerae V52] gi|124113890|gb|EAY32710.1| protease IV [Vibrio cholerae 1587] gi|126509448|gb|EAZ72042.1| protease IV [Vibrio cholerae NCTC 8457] gi|126519158|gb|EAZ76381.1| protease IV [Vibrio cholerae B33] gi|146315139|gb|ABQ19678.1| protease IV [Vibrio cholerae O395] gi|227010009|gb|ACP06221.1| protease IV [Vibrio cholerae M66-2] gi|227013891|gb|ACP10101.1| protease IV [Vibrio cholerae O395] gi|229343673|gb|EEO08648.1| protease IV [Vibrio cholerae RC9] gi|229351813|gb|EEO16754.1| protease IV [Vibrio cholerae B33] gi|229355422|gb|EEO20343.1| protease IV [Vibrio cholerae BX 330286] gi|229370117|gb|ACQ60540.1| protease IV [Vibrio cholerae MJ-1236] gi|254844785|gb|EET23199.1| protease IV [Vibrio cholerae MO10] gi|255737087|gb|EET92483.1| protease IV [Vibrio cholera CIRS 101] gi|262023671|gb|EEY42372.1| protease IV [Vibrio cholerae RC27] gi|262030160|gb|EEY48804.1| protease IV [Vibrio cholerae INDRE 91/1] gi|297542307|gb|EFH78357.1| signal peptide peptidase SppA, 67K type [Vibrio cholerae MAK 757] Length = 616 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 14/287 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 + + ++ +A + G I D + + D + A Sbjct: 307 IGYYEYKTTIKPTTLTDANDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I I+ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + L+ LG+ V ++P + + + A +Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGLTTGLTQGAKDAIQLGIEHGYQ 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F+ LV+E R + L+ GR+WT +A+ +GL+D +G ++ L + Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + +++ P + DL SL D + + +Q L W Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSTLLPKSLQPLAVEWQ 591 Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 99/284 (34%), Gaps = 37/284 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51 + F+ + +LS+ + +Y + + A + + G I + Sbjct: 19 ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 +++E + D++ T L+++ P + I +AI + Sbjct: 79 FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-------- 203 + K+ PF +++ A + + + +V V+ +R I Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEQF 258 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 L + A +KKVGL+D + +++V Q+L Sbjct: 259 VAQLKEVNGDLAALSKKVGLVDELATRQQVRQTLAETFGSDGKD 302 >gi|313637993|gb|EFS03284.1| putative signal peptide peptidase SppA [Listeria seeligeri FSL S4-171] Length = 337 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 70/299 (23%), Positives = 139/299 (46%), Gaps = 25/299 (8%) Query: 18 VTLTVVYFSWSSH------VEDNSPHVARIAIRGQIEDSQE--------------LIERI 57 + + F+ ++ + +A +++ G I+D+ E ++++ Sbjct: 37 IAVIDTLFAGTNELTETVIEKAGPSKIAVLSVDGTIQDTGESTSLLGSTGYNHSFFMDQL 96 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLIS 115 E++ D+S +++ ++SPGG I I +++ + P + MAAS GY IS Sbjct: 97 EQVRDDESIKGVLLYVNSPGGGVMESAQIRDKILQIQKERSIPFYVSMGSMAASGGYYIS 156 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 ++ I A++ +L GS+GV+ Q + KLG++ ++KS K S + Sbjct: 157 APADKIFASKETLTGSLGVIMQGYDYSELMKKLGITDNTIKSGAHKDIMSATRPMTEDEK 216 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 ++MQ ++D SY+ FV++V+ R + ++ ++DGRI+ G +AK+ GLID G QE+ Sbjct: 217 KIMQSMIDDSYNEFVQVVASGRGMSEEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALA 276 Query: 236 SLYALGVDQSIRKIKDWNPPK-NYWFCDL--KNLSISSLLEDTIPLMKQTKVQGLWAVW 291 +L + I+ P + F K S+ + I L + + ++ Sbjct: 277 ALKKDEKLSNATVIQYDEPTSFSSLFSVAAQKMSGQSADISQLIKLTGTLQAPRMMYLY 335 >gi|126438593|ref|YP_001059819.1| peptidase, U7 family protein [Burkholderia pseudomallei 668] gi|126218086|gb|ABN81592.1| peptidase, U7 family protein [Burkholderia pseudomallei 668] Length = 333 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 63/289 (21%), Positives = 125/289 (43%), Gaps = 17/289 (5%) Query: 7 KIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 +I R+ L+++ F S + H A + I G+I +++++ ++ Sbjct: 48 RIFFRFAFLAVLGALAFAFLSVSGDGSKLASGRHTAVVTIDGEIAASTNANAEDINTALD 107 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115 D +++ ++SPGGS ++ I++++ + KP+ V +M AS GY I+ Sbjct: 108 SAFEDSGTVGVVLKINSPGGSPVQAGIVYDEIRRLRKKYPAKPLYVVVSDMCASGGYYIA 167 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL + KLGV + S K PFS PK Sbjct: 168 AAADKIYVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFFDPFSPETPKMD 227 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q+++D + F++ V + R ++ + G WTGA++ ++GL D G + V + Sbjct: 228 AHAQEMLDEIHAQFIKAVKDGRGARLHESPDIFSGLFWTGAKSIELGLADDYGTTDTVAR 287 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + + D+ ++ + + + ++ Sbjct: 288 DVLK------APDLVDYTVKESLTDRVARRFGAALGKAALKAAVAGGEL 330 >gi|163753142|ref|ZP_02160266.1| protease IV [Kordia algicida OT-1] gi|161326874|gb|EDP98199.1| protease IV [Kordia algicida OT-1] Length = 589 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 64/251 (25%), Positives = 125/251 (49%), Gaps = 10/251 (3%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGG 78 V+ + +A I +GQI ++ + + ++ D++ A+++ ++SPGG Sbjct: 296 KPTVKKSDEKIAVIYAQGQIMYAEGNENFIGQGVINKALKEAREDENVKAIVLRVNSPGG 355 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 SA A E I+R I+ K KPVI + ++AAS GY I+C ++ I A ++ GSIGV Sbjct: 356 SALASELIWREIELTKKEKPVIVSMGDLAASGGYYIACNADKIYAEPNTITGSIGVFGTI 415 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P + + LG++ + V ++ + S F ++ + ++++ ++ Y F + V++ R Sbjct: 416 PNMHKLAEDLGINAEQVGTNKNAVDYSIFEPMSDEQRALIKEGIEDIYDLFTQRVADGRG 475 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + + + GR+WTG +A K+GL+D +GG + Q+ KI++ + Sbjct: 476 MTQEAVDEIGQGRVWTGNDAIKIGLVDEIGGLDMALQAAADAADMTE-YKIEELPVYEKD 534 Query: 259 WFCDLKNLSIS 269 L + Sbjct: 535 LESILNQFTGG 545 Score = 89.3 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 79/209 (37%), Gaps = 6/209 (2%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 +I+ I DD + + ++ +A+ A+ K I + + Sbjct: 82 NIIDAIHYAKDDDKIKGISIKNNTLQAGMAQTKALRDALLAFKESGKFIVSYGDYYSQKD 141 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSE 169 Y ++ ++ + + G+ + Y K F +K G+ ++ ++ K+ E E Sbjct: 142 YYLNSVADTVYLNPVGGLDFKGLSMERMYYKDFQEKYGIKMEVIRHGKYKSAVEGYLNQE 201 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGAEAKKVGLIDVVG 228 ++ + + + S + ++ESRN+ D L+D T A V LID +G Sbjct: 202 MSEANREQISVFLQSIWDEMRTEIAESRNLSSDHLNTLADELAGRTATRALNVKLIDKIG 261 Query: 229 GQEEV---WQSLYALGVDQSIRKIKDWNP 254 ++E Q D + I D+ Sbjct: 262 YEDEYEAGIQYAMGENSDINRVNIYDYAE 290 >gi|121595589|ref|YP_987485.1| peptidase S49 [Acidovorax sp. JS42] gi|120607669|gb|ABM43409.1| peptidase S49 [Acidovorax sp. JS42] Length = 347 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 65/290 (22%), Positives = 122/290 (42%), Gaps = 14/290 (4%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIER 59 + +V+L+ + + ++PH A + ++G+I ++ ++ + Sbjct: 64 RNFWRLAWVLLAGAVIWAALSREMTATSKSTPHTAVVDVKGEIAAGAEASAEFVVAAMRS 123 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCA 117 D + A+++ ++SPGGS I I ++K + KPV V E ASA Y I+ A Sbjct: 124 AFEDAGSQAVVLLINSPGGSPVQAGIINDEIVRLKAKYNKPVYAVVEETCASAAYYIAAA 183 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 ++ I + S+VGSIGVL ++KLGV + + + K PFS Sbjct: 184 ADGIFVDKASIVGSIGVLMDGFGFTGAMEKLGVERRLLTAGENKGFLDPFSPQTETQRAY 243 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 Q ++D + F+ +V + R T G WTG +A ++GL D +G + V + + Sbjct: 244 AQAMLDQIHQQFIGVVKQGRGDRLKVTPETFSGLFWTGQQAVEMGLADQLGNLDYVAREV 303 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + D+ N K + + + + ++ L Sbjct: 304 VK------AEDVIDYTRRDNVAERLAKKFGAAVGMG-AVKGLAALQLPQL 346 >gi|51473706|ref|YP_067463.1| protease IV [Rickettsia typhi str. Wilmington] gi|51460018|gb|AAU03981.1| probable protease IV [Rickettsia typhi str. Wilmington] Length = 304 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 69/261 (26%), Positives = 138/261 (52%), Gaps = 4/261 (1%) Query: 30 HVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 + N ++A + I G I + ++ +++++I + ALIV+++SPGG+ E I+ Sbjct: 47 SINSNEDYIASVLIDGIILEDEKRDKKLKKIIDNSHIKALIVNVNSPGGTVVGSEKIYNI 106 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 ++K+ +KPV+ + MA S GYLIS + I++ ++ GSIGV+ Q V KLG Sbjct: 107 LRKISAKKPVVVVMGTMATSGGYLISLGGDYIISHNGTITGSIGVILQTAEVTELAQKLG 166 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + + KS KA P+P ++ + + + ++ +Y +F+ LVSE R++P ++ L+D Sbjct: 167 IKFNNFKSGAFKAVPNPTEKLTEEVRVAVMENIEDTYKFFIELVSERRSLPIEEVHKLAD 226 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 GR+++G +A K+ L+D +G ++ + L + +KD+ ++ + Sbjct: 227 GRVYSGRQAFKLRLVDTIGSEDTALKWLQEIKKIDINLTVKDYQLKPKSTLIEIMFEDFT 286 Query: 270 SLLEDTIPLMKQTKVQGLWAV 290 SL+ + G+ ++ Sbjct: 287 SLVL----SFFKNSFNGIKSI 303 >gi|166713751|ref|ZP_02244958.1| protease IV [Xanthomonas oryzae pv. oryzicola BLS256] Length = 633 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 63/267 (23%), Positives = 120/267 (44%), Gaps = 11/267 (4%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVS 72 + D+ P VA + G+I + + + D+ A+++ Sbjct: 320 LSQLQAQGSPMDSRPQVAVVVATGEISGGEQPAGRIGGESTAALLRQARDDEKVKAVVLR 379 Query: 73 LSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 + SPGG +A E I R + + + KPV+ + ++AAS GY IS ++ I A +++ GS Sbjct: 380 VDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGS 439 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IG+ P + LDK+GV V ++ ++P A Q++Q +++ Y F Sbjct: 440 IGIFGMVPNLTRALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQALINKGYADFTG 499 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIK 250 V+++R+ D ++ GR+W+GA+AK+ GL+D GG E + +++ Sbjct: 500 KVAQARHQSVDAIDKVARGRVWSGAQAKERGLVDAFGGMSEAVADAADRAKLSRGKFRVR 559 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIP 277 P + + + S + + Sbjct: 560 YVEKPATPFSQFMSGFAGSRMGAWMLS 586 Score = 68.9 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 97/288 (33%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRGQIEDS------ 50 M F + I L L +V+ + + P I G + + Sbjct: 21 MNFTRRLIFNLVFFGFLFLLLLVFVVALARGDGTKPLAERTTLVINPEGTLVEQFSADPV 80 Query: 51 ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQ 91 ++L+ IE +D ++++L S +A + + A+Q Sbjct: 81 SRSLAKAVGDRSAQEVQLRDLVRVIEAAGKDRKIERVLLNLDKFQPSGFASQREVAAALQ 140 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGV 150 K++ I E + YL++ +N + V G+ ++ + + DKLGV Sbjct: 141 KLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGV 200 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 + + K+ P+ + A + ++ + ++ V +R + + Sbjct: 201 DVHLFRVGEYKSAAEPYILDAASADAREADLFWMNDVWQRYLADVGTARKLSPAQLTAGI 260 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 ++ A + L+D + +EEV L GV S Sbjct: 261 DTLPEGVAAAGGDLAKFALQQKLVDGLKTREEVDALLVKRGVADSDAD 308 >gi|58617362|ref|YP_196561.1| putative protease IV [Ehrlichia ruminantium str. Gardel] gi|58416974|emb|CAI28087.1| Putative Protease IV [Ehrlichia ruminantium str. Gardel] Length = 289 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 81/261 (31%), Positives = 158/261 (60%), Gaps = 2/261 (0%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVED--NSPHVARIAIRGQIEDSQELIERIE 58 + LK +T ++ + L + + +S V + ++ ++A++ I G+IE ++E+ + ++ Sbjct: 12 LNSKLKLWRTLTFLMVFLILILSNYVDTSSVSNFLDNEYIAKVNIEGKIETNEEMDKLLK 71 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 +I++D LI++++SPGG+ E +++ I+ V KPV+ +++ AAS GY+ + A+ Sbjct: 72 KIAKDTHIKGLILNINSPGGAVTGSEILYQNIRNVSKYKPVVALLNDFAASGGYMTAIAA 131 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I+A T++ GSIGVL QY + KLG+++KS+KSS +KA SPF E+ + Q + Sbjct: 132 DYIIARHTTITGSIGVLMQYFGIDQLAKKLGITLKSIKSSELKAATSPFEELTQEKEQSV 191 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 + +++ SY++FV +V+E R + ++ L ++DG I+TG+EA +GL+D +GG++E + Sbjct: 192 RHIINDSYNYFVDIVAERRKMTKEQVLAIADGSIYTGSEALAIGLVDQIGGEDEALKWFS 251 Query: 239 ALGVDQSIRKIKDWNPPKNYW 259 + V K+ Sbjct: 252 SQNVKTQKINTLPIREHKSVL 272 >gi|189459815|ref|ZP_03008600.1| hypothetical protein BACCOP_00445 [Bacteroides coprocola DSM 17136] gi|189433425|gb|EDV02410.1| hypothetical protein BACCOP_00445 [Bacteroides coprocola DSM 17136] Length = 588 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 75/269 (27%), Positives = 132/269 (49%), Gaps = 13/269 (4%) Query: 30 HVEDNSPHVARIAIRGQI----------EDSQELIERIERISRDDSATALIVSLSSPGGS 79 + + +A G+I +S+++I+ + ++ D+S A+++ ++SPGGS Sbjct: 299 PKDKSGNVIAVYYAYGEIDGDESADGEGINSEKVIKDLRKLREDESVKAVVLRVNSPGGS 358 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 AY E I+R + +K KPVI + + AAS GY ISCA++ IVA T+L GSIG+ P Sbjct: 359 AYGSEQIWREVSLLKQEKPVIVSMGDYAASGGYYISCAADWIVAEPTTLTGSIGIFGLVP 418 Query: 140 YVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L DKLG++ VK++ + N + +MQ +V+ Y F + ++ R Sbjct: 419 NAEGLLKDKLGLNFDVVKTNELADLGDLTRPFNEEEKALMQGMVNKGYELFTKRCADGRK 478 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + + +++GR+WTG AK + L+D +GG +E + + + + P K Sbjct: 479 MNIEDIKKIAEGRVWTGEMAKDLKLVDELGGLDEAVEVAASHAKIERYTLVSY--PEKED 536 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + L N S + + GL Sbjct: 537 FLTSLLNTRPSRYISSRMQENFGEYYNGL 565 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 100/262 (38%), Gaps = 24/262 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPH-VARIAIRGQIE-------------------DSQ 51 + +L +++L + S S V + ++G + Sbjct: 22 FTILGIISLAGMVASTSGTETIVKDRSVFVLELKGSVMERYQENPIMQFLGEDYATYGLD 81 Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 +++ I + +D + + + + +AI RA+ K I + Sbjct: 82 DILTSIRKAKENDKIKGIYIDAGAFACQTASMQAIRRALVDFKESGKFIVAYAGAYSQGT 141 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SE 169 Y I+ ++ ++A + +G G+ Q ++K LDK+GV ++ + K+ P+ +E Sbjct: 142 YYIASVADKVIANPSGSIGWHGLSAQTMFLKGLLDKVGVEMQVFRVGTYKSAVEPYIATE 201 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL--SDGRIWTGAEAKKVGLIDVV 227 ++P + Q + S + + VSESR I D L + + GL D + Sbjct: 202 MSPANREQTQAFIGSIWQQILNEVSESRKISVDSLNALASRNMDLQPAELYLSTGLADTL 261 Query: 228 GGQEEVWQSLYALGVDQSIRKI 249 ++EV L L + K+ Sbjct: 262 MYKDEVLAYLKQLTDCKEDEKL 283 >gi|256424808|ref|YP_003125461.1| signal peptide peptidase SppA, 67K type [Chitinophaga pinensis DSM 2588] gi|256039716|gb|ACU63260.1| signal peptide peptidase SppA, 67K type [Chitinophaga pinensis DSM 2588] Length = 587 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 77/299 (25%), Positives = 135/299 (45%), Gaps = 18/299 (6%) Query: 4 VLKKIKTRYVM-----LSLVTLTVVYFSWS-SHVEDNSPHVARIAIRGQIEDSQE----- 52 V+ +IK+R + ++ V+++ + + + VA I G I Sbjct: 264 VMDEIKSRLGLKGSDDVNFVSVSKYMDAVDLTENKGADNKVAIIYAEGNIVGGDSEKDVT 323 Query: 53 -----LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 I+ I +D A++ ++SPGGSA A E+I+R + K KPV+ + + A Sbjct: 324 ISSGHFIKLIREARQDKDVKAIVFRVNSPGGSALASESIWRELVLAKKSKPVVVSMGDYA 383 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK-LGVSIKSVKSSPMKAEPSP 166 AS GY ISC ++ I A +L GSIGV P ++ F LGV+ VK++ + Sbjct: 384 ASGGYYISCMADSIFAQPNTLTGSIGVFAVLPNLQGFFKNKLGVTFDGVKTAQYADLGNT 443 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 + + +Q+ VDS Y F V E R + ++ GR+W+G +AK++GL+D Sbjct: 444 SRPLTDIEKKFIQNSVDSIYSTFKSRVVEGRKLSGAVVDSIAQGRVWSGIQAKQLGLVDR 503 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 +GG E L S +++++ +K+ S+ +E + + Sbjct: 504 IGGINEAIACAAKLAKVSS-YRLREYPESDASLSRMMKSFGASAHVEAAVKNELGEQYD 561 Score = 89.3 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 83/280 (29%), Gaps = 31/280 (11%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE------------ 48 M K + ++ + V SP V ++ + Sbjct: 1 MRSFFKIFFATLLAFVVILILGVILLAGVIGSAISPEVVTLSPNSVLVLETSQQYNEQKV 60 Query: 49 ----------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 ++I I+ DD + + E + A+ + Sbjct: 61 SNPVNALLRQEPKSVPGLNDMIRLIKHAETDDDIKGIYLKAEGNANGFATNEEVRNALLR 120 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 K + E+ Y ++ ++ + V G Q ++K L+KL + Sbjct: 121 FKQSGKFVFAYGEVMDQKSYYMASLADRVYVHPKGGVEFSGFFTQLTFLKGTLEKLEIQP 180 Query: 153 KSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD- 209 + K+ P +E+ + Y F++ + +R I ++ Sbjct: 181 QIFYDGRFKSATEPLRETEMTLANRIQTSAYLGDLYGNFLKNIGTARKIDTASLHRYANE 240 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 G I A+A K L+D + ++V + + + + Sbjct: 241 GLIQEAADALKYKLVDGLKYNDQVMDEIKSRLGLKGSDDV 280 >gi|218705264|ref|YP_002412783.1| protease 4 [Escherichia coli UMN026] gi|218432361|emb|CAR13251.1| protease IV (signal peptide peptidase) [Escherichia coli UMN026] Length = 618 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARSAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 99.7 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|190576019|ref|YP_001973864.1| putative protease IV [Stenotrophomonas maltophilia K279a] gi|190013941|emb|CAQ47581.1| putative protease IV [Stenotrophomonas maltophilia K279a] Length = 640 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 116/257 (45%), Gaps = 12/257 (4%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 DN P VA + G+I + + D++ A+++ + SPGG +A Sbjct: 338 DNRPQVAVVVAAGEISGGDLPAGRIGGESTSALLRAARDDENVKAVVLRVDSPGGEVFAS 397 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I R + ++ KPV+ + ++AAS GY IS ++ I A +++ GSIG+ P Sbjct: 398 EQIRREVVALQAAGKPVVVSMGDLAASGGYWISMNADRIYADPSTITGSIGIFGMVPNFS 457 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LDK+GV V ++ ++P Q++Q V++ Y F V+++R P + Sbjct: 458 RALDKIGVHTDGVGTTRFAGAFDVTRPMDPAVGQVIQSVINKGYADFTGRVADARKKPVE 517 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG--VDQSIRKIKDWNPPKNYWF 260 ++ GR+W+GA+AK+ GL+D GG ++ + +++ + Sbjct: 518 AVDEVARGRVWSGAQAKERGLVDAFGGLKDAVADAASRAKLGKADAYRVRYIEKAATPFA 577 Query: 261 CDLKNLSISSLLEDTIP 277 + + S + Sbjct: 578 QFVSGFAGSRAGAWMLS 594 Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 76/210 (36%), Gaps = 12/210 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAAS 109 ++L+ IE D +++ L S +A + A+Q ++ + E Sbjct: 106 RDLLRVIESAKEDKKIERVVLELDKLQPSGFASLREVATALQDLRASGKQLVAYSESMGQ 165 Query: 110 AGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167 + YL++ ++ + V G+ ++ + DKLGV + K K+ P+ Sbjct: 166 SQYLLAAQADEVYLDPMGSVVLEGLGRYRQYFRTGLQDKLGVDVHLFKVGEYKSAAEPYV 225 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV--------LSDGRIWTGAEA 218 +P + + ++ + ++ ++++R + + ++ A Sbjct: 226 LDAASPASKEADLFWMNDVWQRYLADIAKARRLDPAQLAAGIDTLPEGIAAAGGDLAKFA 285 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + L+ + +EE + GV Sbjct: 286 LQQKLVTALKTREEFEDLMIERGVADDDAD 315 >gi|170079132|ref|YP_001735770.1| signal peptide peptidase SppA, 36K type [Synechococcus sp. PCC 7002] gi|169886801|gb|ACB00515.1| signal peptide peptidase SppA, 36K type [Synechococcus sp. PCC 7002] Length = 272 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 74/268 (27%), Positives = 137/268 (51%), Gaps = 8/268 (2%) Query: 32 EDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 VARI I G I + +++ +E + AL++ + SPGG+ + I+ A Sbjct: 7 PKTRKQVARIEITGAIAADTRKRVLKALEEVEE-KKYPALLLRIDSPGGTVGDSQEIYYA 65 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 ++K++ + ++ ++AS G I + IVA ++ GSIGV+ + ++ L+K+G Sbjct: 66 LKKLQEKTKIVASFGNISASGGVYIGMGAQHIVANPGTITGSIGVILRGNNLERLLEKVG 125 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 VS K +KS P K S E+ ++Q+++D SY FV+ V+E+RN+ + +D Sbjct: 126 VSFKVIKSGPYKDILSFDRELTEAEENILQEMIDVSYGQFVKTVAEARNLDVETVKTFAD 185 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLKNLSI 268 GRI+TG +A+++G++D +G +E+ L D + + PK L + Sbjct: 186 GRIFTGEQAQELGVVDRLGTEEDARIWAAKLAGLDPDKAECRTIEEPKPLITRLLSRNQL 245 Query: 269 SSLLEDTIPLMK---QTKVQGLWAVWNP 293 SS + + + ++ T Q LW ++ P Sbjct: 246 SSPVGNALNWVEFELATAGQPLW-LYRP 272 >gi|188574921|ref|YP_001911850.1| signal peptide peptidase SppA, 67K type [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519373|gb|ACD57318.1| signal peptide peptidase SppA, 67K type [Xanthomonas oryzae pv. oryzae PXO99A] Length = 629 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 63/267 (23%), Positives = 120/267 (44%), Gaps = 11/267 (4%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVS 72 + D+ P VA + G+I + + + D+ A+++ Sbjct: 316 LSQLQAQDSPMDSRPQVAVVVATGEISGGEQPAGRIGGESTAALLRQARDDEKVKAVVLR 375 Query: 73 LSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 + SPGG +A E I R + + + KPV+ + ++AAS GY IS ++ I A +++ GS Sbjct: 376 VDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGS 435 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IG+ P + LDK+GV V ++ ++P A Q++Q +++ Y F Sbjct: 436 IGIFGMVPNLTRALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQALINKGYADFTG 495 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIK 250 V+++R+ D ++ GR+W+GA+AK+ GL+D GG E + +++ Sbjct: 496 KVAQARHQSVDAIDKVARGRVWSGAQAKERGLVDAFGGMSEAVADAADRAKLSRGKFRVR 555 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIP 277 P + + + S + + Sbjct: 556 YVEKPATPFSQFMNGFAGSRMGAWMLS 582 Score = 70.8 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 98/288 (34%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRGQIEDS------ 50 M F + I L L +V+ + + P I G + + Sbjct: 17 MNFTRRLIFNLVFFGFLFMLLLVFVVALARGDGTKPLAERTTLVINPEGTLVEQFSADPV 76 Query: 51 ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQ 91 ++L+ IE +D ++++L S +A + + A+Q Sbjct: 77 SRSLAKAVGDRSAQEVQLRDLVRVIEAAGKDRKIERVLLNLDKFQPSGFASQREVAAALQ 136 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGV 150 K++ I E + YL++ +N + V G+ ++ + + DKLGV Sbjct: 137 KLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGV 196 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 + + K+ P+ + A + ++ + ++ V +R + + Sbjct: 197 DVHLFRVGEYKSAAEPYILDAASADAREADLFWMNDVWQRYLADVGTARKLSPAQLTAGI 256 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 ++ A + L+D + +EEV L GV S + Sbjct: 257 DTLPEGVAAAGGDLAKFALQQKLVDGLKTREEVDALLVKRGVADSDAE 304 >gi|121598392|ref|YP_993790.1| peptidase, U7 family protein [Burkholderia mallei SAVP1] gi|251767265|ref|ZP_04820039.1| putative signal peptide peptidase SppA, 36K type [Burkholderia mallei PRL-20] gi|121227202|gb|ABM49720.1| peptidase, U7 family protein [Burkholderia mallei SAVP1] gi|243063309|gb|EES45495.1| putative signal peptide peptidase SppA, 36K type [Burkholderia mallei PRL-20] Length = 333 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 63/289 (21%), Positives = 126/289 (43%), Gaps = 17/289 (5%) Query: 7 KIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 +I R+ L+++ F S + H A + I G+I +++++ ++ Sbjct: 48 RIFFRFAFLAVLGALAFAFLSVSGDGGKLASGRHTAVVTIDGEIAASTNANAEDINTALD 107 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115 D +++ ++SPGGS ++ I++++ + KP+ V +M AS GY I+ Sbjct: 108 SAFEDSGTVGVVLKINSPGGSPVQAGIVYDEIRRLRKKYPAKPLYVVVSDMCASGGYYIA 167 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL + KLGV + S K PFS PK Sbjct: 168 AAADKIYVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFFDPFSPETPKMD 227 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q+++D + F++ V + R ++ + G WTGA++ ++GL D G + V + Sbjct: 228 AHAQEMLDEIHAQFIKAVKDGRGARLHESPDIFSGLFWTGAKSIELGLADDYGTTDTVAR 287 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + + + D+ ++ + + + ++ Sbjct: 288 DVLK------VPDLVDYTVKESLTDRVARRFGAALGKAALKAAVAGGEL 330 >gi|237813214|ref|YP_002897665.1| peptidase, U7 family protein [Burkholderia pseudomallei MSHR346] gi|237504696|gb|ACQ97014.1| peptidase, U7 family protein [Burkholderia pseudomallei MSHR346] Length = 305 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 63/289 (21%), Positives = 125/289 (43%), Gaps = 17/289 (5%) Query: 7 KIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 +I R+ L+++ F S + H A + I G+I +++++ ++ Sbjct: 20 RIFFRFAFLAVLGALAFAFLSVSGDGSKLASGRHTAVVTIDGEIAASTNANAEDINTALD 79 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115 D +++ ++SPGGS ++ I++++ + KP+ V +M AS GY I+ Sbjct: 80 SAFEDSGTVGVVLKINSPGGSPVQAGIVYDEIRRLRKKYPAKPLYVVVSDMCASGGYYIA 139 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL + KLGV + S K PFS PK Sbjct: 140 AAADKIYVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFFDPFSPETPKMD 199 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q+++D + F++ V + R ++ + G WTGA++ ++GL D G + V + Sbjct: 200 AHAQEMLDEIHAQFIKAVKDGRGARLHESPDIFSGLFWTGAKSIELGLADDYGTTDTVAR 259 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + + D+ ++ + + + ++ Sbjct: 260 DVLK------APDLVDYTVKESLTDRVARRFGAALGKAALKAAVAGGEL 302 >gi|270159568|ref|ZP_06188224.1| putative peptidase [Legionella longbeachae D-4968] gi|289165636|ref|YP_003455774.1| signal peptide peptidase [Legionella longbeachae NSW150] gi|269987907|gb|EEZ94162.1| putative peptidase [Legionella longbeachae D-4968] gi|288858809|emb|CBJ12723.1| signal peptide peptidase [Legionella longbeachae NSW150] Length = 318 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 76/291 (26%), Positives = 134/291 (46%), Gaps = 21/291 (7%) Query: 6 KKIKT--RYVMLSLVTLTVVYFSWSSHVE---DNSPHVARIAIRGQIED-----SQELIE 55 ++ K R + L ++ V FS S++ E + PHV + I G++ D S + + Sbjct: 32 RRWKWCMRVIYLLIIAYIVYQFSASTNEEGGTNTKPHVGIVDINGEMADAKPANSDDFAK 91 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM---AASAGY 112 ++ ++ ALIV ++SPGGS E ++ I+ + + P I ASA Y Sbjct: 92 GLDAAYKNSGLKALIVRINSPGGSPVQAEYMYNTIKYYQKKHPDIKIYSVCVDACASAAY 151 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 ++ A++ I A+ S+VGSIGVL+ V ++K+GVS + S K PFS Sbjct: 152 YVAVATDAIYASPASMVGSIGVLYNGFGVVDLMNKIGVSRRLQTSGVNKGFLDPFSPQTD 211 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 Q +Q ++D + F+ V E R G WTG +A +GLID + Sbjct: 212 FEKQKLQTMLDIVHQQFINRVKEGRGSRLHIDDETFSGLFWTGEQALTMGLIDGYASSGQ 271 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 + + + ++ ++ D+ +N + KN+ + + D +PL + Sbjct: 272 LAREII------NVPEVIDYTHKQNLFDRVTKNIGTA--MADELPLSFGAR 314 >gi|262375594|ref|ZP_06068827.1| signal peptide peptidase SppA, 36K type [Acinetobacter lwoffii SH145] gi|262309848|gb|EEY90978.1| signal peptide peptidase SppA, 36K type [Acinetobacter lwoffii SH145] Length = 340 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 69/295 (23%), Positives = 134/295 (45%), Gaps = 16/295 (5%) Query: 4 VLKKIKTRYVMLSLVTLT-VVYFSWSSHVEDNSPHVARIAIRGQI------EDSQELIER 56 K + Y+++ ++ L S H+A + I G I +S I+ Sbjct: 49 FFKFLTFAYLLVVILALGKSCSSVSSDASAAAGSHIAVVDIVGTIAADKQSVNSSNTIKS 108 Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYL 113 +++ + + A++++++SPGGS + I++ IQ +K + K + + + AS Y Sbjct: 109 LKKAFENKQSKAVVLNINSPGGSPVQSDEIWQEIQYLKKQYPGKKLYAVIGDTGASGAYY 168 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 I+ A++ I+ +SLVGSIGV+ V L KLGV +++ S KA S V+P Sbjct: 169 IASAADEIIVNPSSLVGSIGVIMPNYGVTNLLQKLGVEDRTMTSGENKALLSMTQPVDPA 228 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 +Q V+D+ + F+ V + R + G WTG +A K+G+ D +G Sbjct: 229 QKAHVQGVLDNVHGHFINAVKQGRGAKLKSNDPAIFSGLFWTGDQAVKLGIADRIGSLNT 288 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYW--FCDLKNLSISSLLEDTIPLMKQTKVQ 285 + + L ++++ +++P ++ I+S + + T +Q Sbjct: 289 LKRELKT---EKALNYTIEYSPFESVLGRMGSSIGDGIASSVAQKLQSENSTTLQ 340 >gi|300776240|ref|ZP_07086098.1| signal peptide peptidase SppA [Chryseobacterium gleum ATCC 35910] gi|300501750|gb|EFK32890.1| signal peptide peptidase SppA [Chryseobacterium gleum ATCC 35910] Length = 585 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 68/267 (25%), Positives = 126/267 (47%), Gaps = 10/267 (3%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL--------IERIERISRDDSATAL 69 ++L S++ + VA + G I + E ++ I+++ DD A+ Sbjct: 285 ISLASYISSYADDDKSGE-KVAVLYASGSINNGDEYNDIHSEKYVKYIKKLQEDDKVKAV 343 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + ++SPGGSA A + I +Q++K +KP+I + AAS GY ++ A++ I + +L Sbjct: 344 VFRINSPGGSANASDEILFELQQLKKKKPLIVSFGDYAASGGYYVAMAADKIYSEPNTLT 403 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV PY K K G+ V ++ S + V P V MM V+ +Y F Sbjct: 404 GSIGVFGVMPYYKDIAAKNGIRADIVATNANSMYYSGLNGVTPYGVNMMTRSVEGTYKRF 463 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V V+++R +++ + GR+W+G AK++GL+D +G + + ++ Sbjct: 464 VHFVTQNRKKTFEQIDNVGGGRVWSGVRAKEIGLVDELGTLTDAVKFAAQKAGL-KSYQV 522 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTI 276 + + + K+L+ + I Sbjct: 523 DAFPKRMSPFEQIFKDLNEEDVSARII 549 Score = 90.4 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 35/267 (13%), Positives = 91/267 (34%), Gaps = 23/267 (8%) Query: 10 TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------------ 51 + + ++ L V V I ++ I DS Sbjct: 20 ALFFIFFIMMLVFSAMGNDKSVAVKKNSVLTINLKTNIIDSPTEEEMGLFGIGAQNKSIL 79 Query: 52 --ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + +E I + DD+ + + + + AI+ K + + Sbjct: 80 IYDAVEAINKAKTDDNIKGISIEADDLNAGLTQIDDLRNAIEDFKKSGKFVYAYGNGVSQ 139 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 + Y + ++ ++ G+ + + K F DK G+ I+ ++ K+ PF Sbjct: 140 SAYYLGSVADKYYLHPAGMIELKGLSTEVTFFKDFADKYGIGIEVIRHGKFKSAVEPFLR 199 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGAEAKKVGLIDV 226 ++++P+ + + +++ + ++ SR I + ++D ++ + L D Sbjct: 200 NDISPENKEQLSTLLNDLWKNTSNKMAASRKIDTAQFRTITDSLYGMIPEQSLQYKLADK 259 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWN 253 + + E + A + K+ + Sbjct: 260 LMQKSEYENLIRAKLNVKEKEKLNKIS 286 >gi|67924912|ref|ZP_00518304.1| Peptidase S49, SppA [Crocosphaera watsonii WH 8501] gi|67853246|gb|EAM48613.1| Peptidase S49, SppA [Crocosphaera watsonii WH 8501] Length = 272 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 74/266 (27%), Positives = 136/266 (51%), Gaps = 8/266 (3%) Query: 34 NSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 S +ARI I G I + +++ ++ + AL++ + SPGG+ + I+ A++ Sbjct: 9 PSKQIARIEITGAIASETRKYVLDALKTVKE-KKFPALLLRIDSPGGTVGDSQEIYEALR 67 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 ++++ ++ ++AS G I + I+A ++ GSIGV+ + ++ LDK+GVS Sbjct: 68 RLQDEVKIVASFGNISASGGVYIGMGAQHIMANPGTITGSIGVILRGNNLERLLDKVGVS 127 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 K +KS P K + E+ + ++Q+++D SY FV V++ RN+ DK +DGR Sbjct: 128 FKVIKSGPYKDILAFDRELTDEEQHILQEMIDVSYQQFVTTVAQGRNLDVDKVKTFADGR 187 Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI-KDWNPPKNYWFCDLKNLSISS 270 I+TG +A ++GL+D +G +E+ L + D + PK L S Sbjct: 188 IFTGQQALELGLVDRLGTEEDARLWAAELAGLNPDKATCYDLDEPKPLLSRVLSRNQSKS 247 Query: 271 LLEDTIPLMK---QTKVQGLWAVWNP 293 L T+ ++ +T Q LW ++ P Sbjct: 248 KLRTTMDWLEFELKTNGQPLW-LYRP 272 >gi|290968387|ref|ZP_06559927.1| signal peptide peptidase SppA, 36K type [Megasphaera genomosp. type_1 str. 28L] gi|290781574|gb|EFD94162.1| signal peptide peptidase SppA, 36K type [Megasphaera genomosp. type_1 str. 28L] Length = 315 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 136/283 (48%), Gaps = 19/283 (6%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSP---HVARIAIRGQIEDSQ-------------ELIE 55 +++ ++T+ + + + +A I + G I L++ Sbjct: 14 LLVICVITIMAAWLHVREPYDGSGKRGKKIALITVSGPITGGDGQGFWNTGGATAPSLMK 73 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLI 114 +I + + D A+++ + SPGGSA A + I R +Q+ N PV+ + + AAS GY + Sbjct: 74 QIRQATADAEVGAILLRIDSPGGSAAATQEIARELQRAKDNHIPVVVSMGDTAASGGYWL 133 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + + + A +++ GSIGV Y + KLG+ + +KS K SPF + + Sbjct: 134 AVYGDTLFADPSTITGSIGVYMSYYDARGLSRKLGIREEKIKSGAHKDIFSPFRPMTAEE 193 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 QM QD+V+ Y+ FV +V++ R++ + L+DGR++TG+ AK +GL+D +G + Sbjct: 194 KQMTQDMVNEMYNQFVTVVAKERHMRPETVRALADGRVYTGSRAKALGLVDRLGNYYDAL 253 Query: 235 QSLYALGVDQSIRK--IKDWNPPKNYWFCDLKNLSISSLLEDT 275 L + + + + + + NL++S +++ Sbjct: 254 AYTKKLVHTDADDEDCLVTYEDGQPWQDWVKGNLNLSQAVKNV 296 >gi|229515373|ref|ZP_04404833.1| protease IV [Vibrio cholerae TMA 21] gi|229348078|gb|EEO13037.1| protease IV [Vibrio cholerae TMA 21] Length = 616 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 14/287 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 + + ++ +A + G I D + + D + A Sbjct: 307 IGYYEYKTTIKPTTPTDANDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I I+ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + L+ LG+ V ++P + + + A +Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGLTTGLTQGAKDAIQLGIEHGYQ 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F+ LV+E R + L+ GR+WT +A+ +GL+D +G ++ L + Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + +++ P + DL SL D + + +Q L W Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSTLLPKSLQPLAVEWQ 591 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 100/284 (35%), Gaps = 37/284 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51 + F+ + +LS+ + +Y + + A + + G I + Sbjct: 19 ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 +++E + D++ T L+++ P + I +AI + Sbjct: 79 FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203 + K+ PF +++ A + + + +V V+ +R I + Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEEF 258 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 L + A +KKVGL+D + +++V Q+L Sbjct: 259 VAQLKEVNGDLAALSKKVGLVDELATRQQVRQTLAETFGSDGKD 302 >gi|53720054|ref|YP_109040.1| peptidase [Burkholderia pseudomallei K96243] gi|53725724|ref|YP_102320.1| peptidase, U7 family protein [Burkholderia mallei ATCC 23344] gi|76810646|ref|YP_334296.1| peptidase [Burkholderia pseudomallei 1710b] gi|126451071|ref|YP_001081348.1| peptidase, U7 family protein [Burkholderia mallei NCTC 10247] gi|126452303|ref|YP_001067106.1| peptidase, U7 family protein [Burkholderia pseudomallei 1106a] gi|254177667|ref|ZP_04884322.1| peptidase, U7 family protein [Burkholderia mallei ATCC 10399] gi|254191226|ref|ZP_04897730.1| peptidase, U7 family protein [Burkholderia pseudomallei Pasteur 52237] gi|254195901|ref|ZP_04902327.1| peptidase, U7 family protein [Burkholderia pseudomallei S13] gi|254199213|ref|ZP_04905579.1| putative signal peptide peptidase SppA, 36K type [Burkholderia mallei FMH] gi|254205520|ref|ZP_04911872.1| putative signal peptide peptidase SppA, 36K type [Burkholderia mallei JHU] gi|254261915|ref|ZP_04952969.1| peptidase, U7 family protein [Burkholderia pseudomallei 1710a] gi|254296852|ref|ZP_04964305.1| peptidase, U7 family protein [Burkholderia pseudomallei 406e] gi|254357687|ref|ZP_04973960.1| putative signal peptide peptidase SppA, 36K type [Burkholderia mallei 2002721280] gi|52210468|emb|CAH36451.1| family S49 unassigned peptidase [Burkholderia pseudomallei K96243] gi|52429147|gb|AAU49740.1| peptidase, U7 family protein [Burkholderia mallei ATCC 23344] gi|76580099|gb|ABA49574.1| family S49 unassigned peptidase [Burkholderia pseudomallei 1710b] gi|126225945|gb|ABN89485.1| putative signal peptide peptidase SppA, 36K type [Burkholderia pseudomallei 1106a] gi|126243941|gb|ABO07034.1| peptidase, U7 family protein [Burkholderia mallei NCTC 10247] gi|147748809|gb|EDK55883.1| putative signal peptide peptidase SppA, 36K type [Burkholderia mallei FMH] gi|147752963|gb|EDK60028.1| putative signal peptide peptidase SppA, 36K type [Burkholderia mallei JHU] gi|148026814|gb|EDK84835.1| putative signal peptide peptidase SppA, 36K type [Burkholderia mallei 2002721280] gi|157807338|gb|EDO84508.1| peptidase, U7 family protein [Burkholderia pseudomallei 406e] gi|157938898|gb|EDO94568.1| peptidase, U7 family protein [Burkholderia pseudomallei Pasteur 52237] gi|160698706|gb|EDP88676.1| peptidase, U7 family protein [Burkholderia mallei ATCC 10399] gi|169652646|gb|EDS85339.1| peptidase, U7 family protein [Burkholderia pseudomallei S13] gi|254220604|gb|EET09988.1| peptidase, U7 family protein [Burkholderia pseudomallei 1710a] Length = 333 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 63/289 (21%), Positives = 125/289 (43%), Gaps = 17/289 (5%) Query: 7 KIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 +I R+ L+++ F S + H A + I G+I +++++ ++ Sbjct: 48 RIFFRFAFLAVLGALAFAFLSVSGDGGKLASGRHTAVVTIDGEIAASTNANAEDINTALD 107 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115 D +++ ++SPGGS ++ I++++ + KP+ V +M AS GY I+ Sbjct: 108 SAFEDSGTVGVVLKINSPGGSPVQAGIVYDEIRRLRKKYPAKPLYVVVSDMCASGGYYIA 167 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL + KLGV + S K PFS PK Sbjct: 168 AAADKIYVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFFDPFSPETPKMD 227 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q+++D + F++ V + R ++ + G WTGA++ ++GL D G + V + Sbjct: 228 AHAQEMLDEIHAQFIKAVKDGRGARLHESPDIFSGLFWTGAKSIELGLADDYGTTDTVAR 287 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + + D+ ++ + + + ++ Sbjct: 288 DVLK------APDLVDYTVKESLTDRVARRFGAALGKAALKAAVAGGEL 330 >gi|21244537|ref|NP_644119.1| protease IV [Xanthomonas axonopodis pv. citri str. 306] gi|21110210|gb|AAM38655.1| protease IV [Xanthomonas axonopodis pv. citri str. 306] Length = 633 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 67/268 (25%), Positives = 123/268 (45%), Gaps = 13/268 (4%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 D+ P VA + G+I + + + DD A+++ + SPGG +A Sbjct: 331 DSRPQVAVVVAAGEISGGEQPAGRIGGESTAALLRQARDDDDVKAVVLRVDSPGGEVFAS 390 Query: 84 EAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I R + + + KPV+ + ++AAS GY IS ++ I A +++ GSIG+ P + Sbjct: 391 EQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGSIGIFGMVPNLT 450 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LDK+GV V ++ ++P A Q++Q V++ Y F V+++R+ D Sbjct: 451 RALDKIGVHTDGVATTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTGKVAQARHQSVD 510 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261 ++ GR+W+GA+AK+ GL+D GG +E + +++ P + Sbjct: 511 AIDKVARGRVWSGAQAKERGLVDAFGGMQEAVADAADRAKLSRGKFRVRYVEKPATPFSQ 570 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + S + + + L A Sbjct: 571 FMSGFAGSRMGAWMLS--DSGMARALLA 596 Score = 65.8 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 97/288 (33%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRGQIEDS------ 50 M F + I L L +V+ + + P I G + + Sbjct: 21 MNFTRRLIFNLVFFGFLFLLLLVFVVALARGDGTKPLAERTTLVINPEGTLVEQFSADPV 80 Query: 51 ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQ 91 ++L+ IE +D ++++L S +A + + A+Q Sbjct: 81 SRSLAKAVGDKSAEEVQLRDLVRVIEAAGKDRKIERVLLNLDKLQPSGFASQREVAVALQ 140 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGV 150 K++ I E + YL++ +N + V G+ ++ + + DKLGV Sbjct: 141 KLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGV 200 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-- 206 + + K+ P+ + A + ++ + ++ V +R + + Sbjct: 201 DVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWRRYLADVGTARKLSPAQLAAGI 260 Query: 207 ------LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 ++ A + L+D + +EEV L GV S Sbjct: 261 DTLPEGVAAAGGDLAKFALQQKLVDGLKTREEVDALLVQRGVADSDAD 308 >gi|218258308|ref|ZP_03474710.1| hypothetical protein PRABACTJOHN_00365 [Parabacteroides johnsonii DSM 18315] gi|218225548|gb|EEC98198.1| hypothetical protein PRABACTJOHN_00365 [Parabacteroides johnsonii DSM 18315] Length = 522 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 14/231 (6%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIED--------------SQELIERIERISRDDSATAL 69 S ++N +A + G+I D S+E+ ++ ++ DD A+ Sbjct: 292 IVSIKVKEKENKNKIAVLYAEGEIRDEDSSSPFSADEQVISEEMANKLRKLKDDDDVKAV 351 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + ++SPGGSAY E I++ + ++K +KP++ + AAS GY ISCA+N IVA T+L Sbjct: 352 VFRVNSPGGSAYISEQIWKEVVELKAKKPIVVSMGNYAASGGYYISCAANKIVAERTTLT 411 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV DK+GV+ VK++ + ++Q V+ +Y F Sbjct: 412 GSIGVFGVVRNFTGTFDKVGVTTDVVKTNTFADLGDMSRPMREDEKALIQRGVEQTYDLF 471 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 + ++ R + + + GR+WTG +A + GL+D +GG ++ + L Sbjct: 472 LTRCADGRGMTKAEIDSIGQGRVWTGEQALERGLVDQLGGMDDAIKEAATL 522 Score = 93.9 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 86/260 (33%), Gaps = 23/260 (8%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------------QELIE 55 + + SS + + V ++++ G + D ++I+ Sbjct: 27 IFFIIGVAASADGSSEYKPDKNTVFKLSLDGVLVDQTVKNPFSELMGESSNQMAVSDVIK 86 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 I R +D+ + + S EAI R + K+ I + Y + Sbjct: 87 AIRRAKANDNIKGIYLEAGSLSTGFAGIEAIRRELVDFKDSGKFIVSYGDFYTQGSYYLC 146 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVNPK 173 ++ + V +G+ Q + +K+GV K K+ PF + + Sbjct: 147 SVADSVFLNPQGSVSLVGLASQGIFFTGLAEKVGVEHYIFKVGTYKSAVEPFFLKKFSDA 206 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE--AKKVGLIDVVGGQE 231 + + + S + + +SRNI D+ + + G A L D + + Sbjct: 207 NREQLTSFLGSVWGNLTTAIEKSRNISSDELNRYLNEGLAMGQASNAIDYKLADGLRYRY 266 Query: 232 EVWQSLYALGVDQSIRKIKD 251 EV + + K+K Sbjct: 267 EVENCVKEMAGQDVKGKLKT 286 >gi|229592113|ref|YP_002874232.1| putative peptidase [Pseudomonas fluorescens SBW25] gi|229363979|emb|CAY51518.1| putative peptidase [Pseudomonas fluorescens SBW25] Length = 327 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 64/294 (21%), Positives = 124/294 (42%), Gaps = 18/294 (6%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIE 58 + K+ T +++++ L + + A I +RG I D + ++ + Sbjct: 41 IFFKLLTFVWLIAMLALFSPLMDMEKSATRGAHYTALIEVRGVIADKESASADNIVSSLR 100 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAGYLIS 115 D +I+ ++SPGGS ++ I++ + + + ++ AS Y I+ Sbjct: 101 AAFEDPKVKGVILRINSPGGSPVQSGYVYDEIRRLRGLHPDIKLYAVISDLGASGAYYIA 160 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I A + SLVGSIGV ++KLGV ++ S K+ PF Sbjct: 161 SAADQIYADKASLVGSIGVTAAGYGFVGTMEKLGVERRTYTSGEHKSFLDPFQPQKADET 220 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 Q Q V+D+++ F+ V + R L G +W+G +A +GLID +G V Sbjct: 221 QFWQGVLDTTHRQFIASVKQGRGDRLKDKDHPELFSGLVWSGEQALPLGLIDGLGSASSV 280 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + +++ D+ ++ + K L S + + + L + L Sbjct: 281 ARDVIG------EKELVDFTVEESPFDRFSKKLGSS--VAEKLALYMGFQGPTL 326 >gi|89094371|ref|ZP_01167312.1| peptidase, putative [Oceanospirillum sp. MED92] gi|89081430|gb|EAR60661.1| peptidase, putative [Oceanospirillum sp. MED92] Length = 349 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 66/277 (23%), Positives = 128/277 (46%), Gaps = 19/277 (6%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSH-----VEDNSPHVARIAIRGQI-----EDSQELIE 55 ++ + +L+ L + + + + H A I ++G I ++ +I Sbjct: 61 RRWGIFFKLLTFGYLFALLYLLLAGPQIPVDQAGEAHTAIIEVKGPISADDEANADSIIW 120 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN---RKPVITEVHEMAASAGY 112 + +++ A A+I+ ++SPGGS I+ I++++ KPV + ++ AS Y Sbjct: 121 SLREAFKEEQAKAIILRINSPGGSPVQSGYIYDEIKRLRQIYTDKPVYAVITDIGASGAY 180 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 I+ A++ I A + SLVGSIGV+ ++K+GV + + KA PFS Sbjct: 181 YIAAAADSIYADKASLVGSIGVVAGGFGFVDLMNKVGVERRLYTAGEHKAFLDPFSPSKE 240 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 + Q V+++++ F+ V R + L G +WTG +A +GL+D +G Sbjct: 241 GEKEFWQGVLNTTHQQFIDQVKLGRGERLKDSPELFSGLVWTGEQAVDLGLVDGLGSSSY 300 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 V + + + K+ D++P + W + L +S Sbjct: 301 VAREIVK------VEKLVDYSPQQAPWKQLVDELGVS 331 >gi|253989459|ref|YP_003040815.1| protease 4 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780909|emb|CAQ84071.1| protease iv (endopeptidase iv) (signal peptide peptidase) [Photorhabdus asymbiotica] Length = 618 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 67/287 (23%), Positives = 130/287 (45%), Gaps = 23/287 (8%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSAT 67 +++ ++ + + ++A I +G I D +I + DD+ Sbjct: 308 FNAISIYDYAPQNR-SSSKGNIAVIVAQGAIIDGQQASGMVGGDTTAAQIRQARLDDNIK 366 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAET 126 A+++ ++SPGGS A + I + ++ KPV+ + MAAS GY IS +N I+A ++ Sbjct: 367 AVVLRVNSPGGSVSASDVIRTELAALRAANKPVVVSMGGMAASGGYWISTPANYIIANQS 426 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 +L GSIG+ + LD +G+ V ++P+ S ++ + ++MQ +++ Y Sbjct: 427 TLTGSIGIFGVITTYENSLDHVGIHTDGVSTTPLAD-ISFTKGLSKEFSELMQLNIENGY 485 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 F+ LV+++RN ++ ++ G +W G +AK GL+D +G ++ L Sbjct: 486 KNFIGLVADARNKTPEEVDKIAQGHVWIGNDAKTNGLVDQLGDFDDAVAKAAELAKLD-- 543 Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 K +S S LL + + Q ++ W P Sbjct: 544 ---------KPELDWMQPEMSFSELLINQLTATTQARIPEAIQAWLP 581 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 46/332 (13%), Positives = 108/332 (32%), Gaps = 48/332 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH--VARIAIRGQIEDSQ------- 51 + FV + + ++ ++ + + + + + + + G + D Sbjct: 19 LNFVREVVSNLIFIVLILAVIGGFLIYQQPNKTVDSYQGALYVNLTGVVVDQVSSRNPLN 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 ++++ I + DD T LI+ L G+ + I +AI Sbjct: 79 QLGRELFGASSNKLQENSLFDIVDNIRQAKTDDKITGLILKLDDFIGADQPSMQYIGKAI 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 + K + + + + Y ++ ++ I + VG G Y K LD L V Sbjct: 139 NEFKTSGKPVYSISDSYNQSQYYLATYADKIYLSPQGTVGLYGYSTNNLYYKSLLDSLKV 198 Query: 151 SIKSVKSSPMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 + + K+ P +++P A + V+ +H ++ ++ +R + + Sbjct: 199 TTHIFRVGTYKSAVEPVMRDDMSPAAREADSLWVNGLWHNYLNTIAINRKLSVHQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK------IKDWNP 254 L A K L+D V + + + + I D+ P Sbjct: 259 EEMIADLRAAGGDNAQYALKRKLVDYVAPRNIIESEMTKAFGWDEKNQHFNAISIYDYAP 318 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 N+++ I + + + G Sbjct: 319 QNRS--SSKGNIAVIVAQGAIIDGQQASGMVG 348 >gi|189466890|ref|ZP_03015675.1| hypothetical protein BACINT_03271 [Bacteroides intestinalis DSM 17393] gi|189435154|gb|EDV04139.1| hypothetical protein BACINT_03271 [Bacteroides intestinalis DSM 17393] Length = 589 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 72/270 (26%), Positives = 133/270 (49%), Gaps = 13/270 (4%) Query: 30 HVEDNSPHVARIAIRGQI------------EDSQELIERIERISRDDSATALIVSLSSPG 77 + + VA G I +S+++I + ++ ++ A+++ ++SPG Sbjct: 298 PKDKSGNIVAVYYAYGAIDSGSSYADSENGINSEKVIRDLRKLKENEDVKAVVLRVNSPG 357 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 GSA+ E I+ A+ ++K KPVI + + AAS GY ISC ++ IVA T+L GSIG+ Sbjct: 358 GSAFGSEQIWYAVTELKKEKPVIVSMGDYAASGGYYISCNADSIVADPTTLTGSIGIFGM 417 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 +P VK DK+G+S VK++ +N +MQ++V+ Y FV+ +E R Sbjct: 418 FPNVKGLTDKIGLSFDVVKTNTYSDFGMMGRALNDGEKALMQNMVNEGYELFVKRCAEGR 477 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 + D+ +++GR+WTGA+AK++GL+D +GG ++ + A + + K+ Sbjct: 478 GMTTDEIKKIAEGRVWTGAKAKELGLVDELGGLDKALEMAIAKAGL-DAYTVMSYPGKKS 536 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 ++ + + + Sbjct: 537 FFETLMDTNPGRYIQSRMLKGKVGELYNQF 566 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 104/281 (37%), Gaps = 33/281 (11%) Query: 1 MEFVLKK-------IKTRYVMLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQIE-- 48 M+ K I V+L V++ +++ SS + V + +RG + Sbjct: 1 MKDFFKFTLATITGIIVSCVVLFFVSILILFSMLSSSESETQVRKNSVMMLDMRGMLSER 60 Query: 49 -----------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 +++ I++ +++ + + S G + E I +A+ Sbjct: 61 SQDNPFDMFLSEDETTYGLDDILSSIQKAKDNENIKGIYLQAGSMGAGFASIEEIRKALA 120 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 K + + + Y ++ ++ ++ +G G+ + K L K+GV Sbjct: 121 DFKTSGKFVVAYGDQYSQRLYYLASVADKVILNPQGSIGWYGLASTPVFYKDLLSKIGVE 180 Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 ++ K K+ PF +E++P + + +D + + +SESR + +K +D Sbjct: 181 MQVFKVGTYKSAVEPFISTEMSPANREQVTVFLDGIWGQMLGDISESRGVSKEKLNEAAD 240 Query: 210 G--RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + + + GL D + + +V L L + Sbjct: 241 KMLMFYPAEDCVEYGLADTLIYKNDVRNYLKTLIGIDEDDR 281 >gi|67641118|ref|ZP_00439903.1| peptidase, U7 family protein [Burkholderia mallei GB8 horse 4] gi|226199956|ref|ZP_03795506.1| putative signal peptide peptidase SppA, 36K type [Burkholderia pseudomallei Pakistan 9] gi|242315612|ref|ZP_04814628.1| putative signal peptide peptidase SppA, 36K type [Burkholderia pseudomallei 1106b] gi|225928012|gb|EEH24049.1| putative signal peptide peptidase SppA, 36K type [Burkholderia pseudomallei Pakistan 9] gi|238521982|gb|EEP85429.1| peptidase, U7 family protein [Burkholderia mallei GB8 horse 4] gi|242138851|gb|EES25253.1| putative signal peptide peptidase SppA, 36K type [Burkholderia pseudomallei 1106b] Length = 305 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 63/289 (21%), Positives = 125/289 (43%), Gaps = 17/289 (5%) Query: 7 KIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 +I R+ L+++ F S + H A + I G+I +++++ ++ Sbjct: 20 RIFFRFAFLAVLGALAFAFLSVSGDGGKLASGRHTAVVTIDGEIAASTNANAEDINTALD 79 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115 D +++ ++SPGGS ++ I++++ + KP+ V +M AS GY I+ Sbjct: 80 SAFEDSGTVGVVLKINSPGGSPVQAGIVYDEIRRLRKKYPAKPLYVVVSDMCASGGYYIA 139 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL + KLGV + S K PFS PK Sbjct: 140 AAADKIYVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFFDPFSPETPKMD 199 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q+++D + F++ V + R ++ + G WTGA++ ++GL D G + V + Sbjct: 200 AHAQEMLDEIHAQFIKAVKDGRGARLHESPDIFSGLFWTGAKSIELGLADDYGTTDTVAR 259 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + + D+ ++ + + + ++ Sbjct: 260 DVLK------APDLVDYTVKESLTDRVARRFGAALGKAALKAAVAGGEL 302 >gi|229586788|ref|YP_002845289.1| Signal peptide peptidase SppA, 36K type [Rickettsia africae ESF-5] gi|228021838|gb|ACP53546.1| Signal peptide peptidase SppA, 36K type [Rickettsia africae ESF-5] Length = 304 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 78/298 (26%), Positives = 152/298 (51%), Gaps = 15/298 (5%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSW-----------SSHVEDNSPHVARIAIRGQIEDSQEL 53 ++IK+R ++ L + ++ + + N ++A + I I + ++ Sbjct: 11 RRQIKSRLLIWKLTAIILIAIVFLLVGKDFAPKEVLPINSNEDYIASVLIDEIILEDEKR 70 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 +++++I D ALIV+++SPGG+ E I+ ++K+ +KPV+ + MAAS GYL Sbjct: 71 DKKLKKIIDDSHIKALIVNVNSPGGTVVGAEKIYNILRKISAKKPVVIVMGTMAASGGYL 130 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 IS + I++ ++ GSIGV+ Q V KLG+ + KS +KA P+P ++ Sbjct: 131 ISLGGDYIISHNGTITGSIGVILQTAEVTELAQKLGIKFNNFKSGELKAVPNPTEKLTEA 190 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 + D ++ +Y++F+ LVSE RN+P ++ L+DGR+++G +A K+ L+D +G ++ Sbjct: 191 VRIAIMDNIEDTYNFFLELVSERRNLPIEEVKKLADGRVYSGRQALKLKLVDAIGSEDTA 250 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 + L + +KD+ D+ S+ P + G+ A++ Sbjct: 251 LKWLQEVQKINVNLLVKDYQLKPKPKLMDIILEDFDSIA----PSFFKNSFNGIKAIF 304 >gi|297544279|ref|YP_003676581.1| signal peptide peptidase SppA, 36K type [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842054|gb|ADH60570.1| signal peptide peptidase SppA, 36K type [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 305 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 83/271 (30%), Positives = 139/271 (51%), Gaps = 13/271 (4%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL----------IERIERISRDDS 65 S+V++ V V S + I I G I + + +E+I + D++ Sbjct: 19 SIVSMFVSMPQQDKGVSTASNTIGVIMIEGVIGQTTNILGIPQNINDPVEQIRKAQEDNA 78 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP-VITEVHEMAASAGYLISCASNIIVAA 124 A++V ++SPGGSA I++ ++K+K +I + + AAS GY+++ A +IIVA Sbjct: 79 VRAVVVKINSPGGSAAKSIEIYKELKKLKKTGKKIIVSMGDAAASGGYMVASAGDIIVAN 138 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 ++ GSIGV+ QY + DKLG+ ++KS P K SP ++ P+ ++++ V++ Sbjct: 139 PATITGSIGVIMQYTNYEGLYDKLGLKEITIKSGPYKDIGSPTRDLTPEEKKILRGVIED 198 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 ++ F+ +VSE R +P DK L+DGRI+TG +A KVGL+D +G + Q Sbjct: 199 TFQQFLEIVSEGRKMPIDKVKELADGRIFTGRQALKVGLVDKLGDFYDAVDIAAKESGIQ 258 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 +K + P L S LED Sbjct: 259 GKPVLKYYATP--TPLSILFGSGAKSNLEDI 287 >gi|78355555|ref|YP_387004.1| signal peptide peptidase A [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217960|gb|ABB37309.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 280 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 66/265 (24%), Positives = 126/265 (47%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVS 72 V L + + + + I ++G + D+ ++ E + RD +++ Sbjct: 8 VALFWGAMATLRLLFGDEDFSGGQRLGLINVQGMLLDTTPYVDFAEELRRDPDVRGVLLR 67 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 ++SPGG+ + + A++++ KPV+ + AAS GY IS + IVA ++L SI Sbjct: 68 VNSPGGAVAPSQELHDAVKRLATSKPVVVSMGAAAASGGYYISVPATRIVANPSTLTASI 127 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GV + V + LG+ ++ S +K SPF+E+ P+ + +Q VV Y FV+ Sbjct: 128 GVKMEMGNVHELMKALGIHHVALTSGELKNAGSPFAEMTPREREYLQSVVMDMYDQFVQA 187 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 V+E R++P + +++DGR TG +A + GL+D++G + Q L L ++ Sbjct: 188 VAEGRHLPPEDVRLVADGRAMTGRQALQAGLVDMLGDRHTAMQELLRLCNATGELPVQAG 247 Query: 253 NPPKNYWFCDLKNLSISSLLEDTIP 277 K +L + + + + Sbjct: 248 PEEKRSILRELFLSVLPAGVISGMD 272 >gi|121591501|ref|ZP_01678769.1| protease IV [Vibrio cholerae 2740-80] gi|121546642|gb|EAX56829.1| protease IV [Vibrio cholerae 2740-80] Length = 605 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 14/287 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 + + ++ +A + G I D + + D + A Sbjct: 307 IGYYEYKTTIKPTTLTDANDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I I+ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + L+ LG+ V ++P + + + A +Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGLTTGLTQGAKDAIQLGIEHGYQ 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F+ LV+E R + L+ GR+WT +A+ +GL+D +G ++ L + Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + +++ P + DL SL D + + +Q L W Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSTLLPKSLQPLAVEWQ 591 Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 99/284 (34%), Gaps = 37/284 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51 + F+ + +LS+ + +Y + + A + + G I + Sbjct: 19 ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 +++E + D++ T L+++ P + I +AI + Sbjct: 79 FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-------- 203 + K+ PF +++ A + + + +V V+ +R I Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEQF 258 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 L + A +KKVGL+D + +++V Q+L Sbjct: 259 VAQLKEVNGDLAALSKKVGLVDELATRQQVRQTLAETFGSDGKD 302 >gi|325497076|gb|EGC94935.1| protease 4 [Escherichia fergusonii ECD227] Length = 594 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 15/283 (5%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATAL 69 ++ ++ + V+ + + G I D +E +I D A+ Sbjct: 286 AISFYDYALKTPVKTPE-MIGVVFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAI 344 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 ++ ++SPGGS A E I + K KPV+ + MAAS GY IS +N I+A ++L Sbjct: 345 VLRVNSPGGSVTASEVIRSELAAAKAAGKPVVVSMGGMAASGGYWISTPANYIIANPSTL 404 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIG+ V+ LD +GV V +SP+ S MQ +++ Y Sbjct: 405 TGSIGIFGVINTVENSLDSIGVHTDGVSTSPLANMSVTQSLPTEVQQM-MQLSIENGYKR 463 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 F+ LV+++R ++ ++ G +WTG +AK GL+D +G ++ L Sbjct: 464 FITLVADARKSTPEQVDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWS 522 Query: 249 IKDWNPPKNYWFC--DLKNLSISSLLEDTIPLMKQTKVQGLWA 289 I + ++ D + S+ ++L I M + + Sbjct: 523 INYYQDEPTFFDMVVDSMSGSVRAMLPQAIQAMLPAPLATAVS 565 Score = 94.3 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 99/280 (35%), Gaps = 39/280 (13%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARI-AIRGQIEDSQ--------------- 51 + ++ L L+ + + S+ D++ A + I G I D Sbjct: 3 LNLLFIFLVLIGVGIWMQVSSNGSSDSASRGALLLDISGVIVDKPSNNHRLGVIGRQLFG 62 Query: 52 ------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKP 98 +++ I + D + T +++ L + G+ + I +A+++ ++ Sbjct: 63 ASSERLQENSLFDIVNTIRQAKDDSNITGIVLDLENFAGADQPSMQYIGKALREFRDSGK 122 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 + + E Y ++ +N I + V G Y K LDKL VS + Sbjct: 123 PVIAIGESYTQGQYYLASFANKIWLSPQGTVDLHGFATNGLYYKSLLDKLKVSTHVFRVG 182 Query: 159 PMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLS 208 K+ PF +++P A + V + ++ ++ +R I + L+ Sbjct: 183 TYKSAVEPFIRDDMSPAAREADSRWVGELWQNYLNTIAANRQISAQQVFPGAQAMIADLT 242 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 T A L+D +G +V ++L K Sbjct: 243 KLGGDTAQYALDHKLVDALGSSADVEKALTKQFGWSKADK 282 >gi|124022325|ref|YP_001016632.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus marinus str. MIT 9303] gi|123962611|gb|ABM77367.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus marinus str. MIT 9303] Length = 270 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 69/265 (26%), Positives = 133/265 (50%), Gaps = 6/265 (2%) Query: 33 DNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + +A I+I G I + + +++ I+ + + AL++ + SPGG+ + I A+ Sbjct: 8 KSRRRIAHISIDGAISGATRERVLKAIKEVEERE-FPALLLRIDSPGGTVGDSQEIHAAL 66 Query: 91 QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++ + V+ ++AS G + A+ IVA ++ GSIGV+ + + L+++G Sbjct: 67 LRLREKGCHVVASFGNVSASGGVYVGVAAEKIVANPGTITGSIGVILRGNNLSKLLERIG 126 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + ++VKS K SP + + Q++Q ++DSSY FV V+E R++ ++ +D Sbjct: 127 IRFETVKSGTYKDILSPDRALTAEERQLLQSLIDSSYEQFVNAVAEGRHLSAEEVRNFAD 186 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFCDLKNLSI 268 GR+++GA+A ++GLID +G +E + L + PK L + Sbjct: 187 GRVFSGAQAHELGLIDELGDEEHARKLAAKLADLDEANTQTLKLGRPKKRLAGFLPGSKL 246 Query: 269 SSLLEDTIPLMKQTKVQGLWAVWNP 293 S L + + L Q LW ++ P Sbjct: 247 LSKLAELLNLELGNSGQVLW-LFLP 270 >gi|119720728|ref|YP_921223.1| signal peptide peptidase SppA, 36K type [Thermofilum pendens Hrk 5] gi|119525848|gb|ABL79220.1| signal peptide peptidase SppA, 36K type [Thermofilum pendens Hrk 5] Length = 307 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 67/293 (22%), Positives = 133/293 (45%), Gaps = 20/293 (6%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----------DSQELIERIERI 60 V + ++ +V + +P++A+I I+G I+ +E I+ +++ Sbjct: 17 IVAVVILGAVLVLLRQGATQTRLTPYIAQITIKGTIDYASSSIFGATPGVEEYIKLVKQA 76 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 D A A+++ SPGG+ A + +++A++++ +K V++ + AS Y+ + S Sbjct: 77 EEDPMAKAVLLVFDSPGGTVTASDELYQAVKELSQKKVVVSYAKGLLASGAYMAALPSRA 136 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 I+A+ TS VGS+GV+ V L K+GV++ + KS +K SP+ + + +++++ Sbjct: 137 ILASPTSEVGSVGVIVTVLNVGNLLGKIGVTVYTFKSGELKDVGSPYRPMTEEDAKVLEE 196 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ + F V E R + GR +T +A + GLID V +E AL Sbjct: 197 MVNYYFGLFKGRVLEHRGNVSSEV---FSGRPFTPDKALQAGLIDKVCTYQEAVNYTRAL 253 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 ++ + P L + IP + + +W P Sbjct: 254 ANLPETAEVVELKPRTPTLLDLLLGTYSGAGNRLVIPSIV------VLYMWPP 300 >gi|297618458|ref|YP_003703617.1| signal peptide peptidase SppA, 36K type [Syntrophothermus lipocalidus DSM 12680] gi|297146295|gb|ADI03052.1| signal peptide peptidase SppA, 36K type [Syntrophothermus lipocalidus DSM 12680] Length = 295 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 63/294 (21%), Positives = 145/294 (49%), Gaps = 19/294 (6%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN------SPHVARIAIRGQIEDS------- 50 + +++ ++ + + V+ WS + + + I G + + Sbjct: 1 MRQRLVVGLIVAFCLAVLVLAVKWSPDTSGSASMVGAGGAIGVVRIEGVLSGASQGYGGA 60 Query: 51 ---QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEM 106 +E++E + + D A+++ + SPGGSA A + I R I+++K + KP++ + ++ Sbjct: 61 TQTEEIMEALREAGKRDDIKAVLIRIDSPGGSAVAAQEIAREIERLKKKGKPLVASMGDV 120 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 AAS GY ++ + + I A + GSIGV+ + ++ ++G+ + +KS K S Sbjct: 121 AASGGYWVAASCDEIFANPATTTGSIGVITEQVNLEELFSRMGIETEVIKSGSYKDMGSI 180 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESR--NIPYDKTLVLSDGRIWTGAEAKKVGLI 224 +++P+ ++++++VD Y F+ V + R + D+ ++DGR+ TG +AK++GL+ Sbjct: 181 TRKLSPEERKLLEELVDDVYQQFLLQVEKGRRGKMSPDEIRTIADGRVMTGNKAKQIGLV 240 Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278 D +G + + L ++ + NP + + L+ ++L+ + + Sbjct: 241 DHLGNYYDALERTKELANLSGEPQVIELNPQDPFSKVFSQLLNSKAILQPYLSI 294 >gi|15604382|ref|NP_220898.1| protease IV (sppA) [Rickettsia prowazekii str. Madrid E] gi|3861074|emb|CAA14974.1| PROTEASE IV (sppA) [Rickettsia prowazekii] gi|292572137|gb|ADE30052.1| Signal peptide peptidase SppA 36K type [Rickettsia prowazekii Rp22] Length = 305 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 73/263 (27%), Positives = 138/263 (52%), Gaps = 4/263 (1%) Query: 30 HVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 + N ++A + I G I + ++ +++++I D ALIV+++SPGG+ E I+ Sbjct: 47 SINSNEDYIASVLIDGIILEDEKRDKKLKKIIDDSHIKALIVNVNSPGGTVVGSEKIYNI 106 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 ++K+ +KPV+ + MA S GYLIS + I++ ++ GSIGV+ Q V KLG Sbjct: 107 LRKISAKKPVVVIMGTMATSGGYLISLGGDYIISHNGTITGSIGVILQTAEVTELAQKLG 166 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + + KS KA P+P ++ + + ++ +Y +F+ LVSE R++P ++ L+D Sbjct: 167 IKFNNFKSGAFKAVPNPTEKLTEAVRLAIMENIEDTYKFFIELVSERRSLPIEEVQKLAD 226 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 GR+++G +A K+ L+D +G ++ + L + IKD+ ++ + Sbjct: 227 GRVYSGRQALKLRLVDTIGSEDTALKWLQEIKKININLTIKDYQLKPKSTLIEMIFEDFN 286 Query: 270 SLLEDTIPLMKQTKVQGLWAVWN 292 SLL + G+ +V+ Sbjct: 287 SLLL----SFFKNSFSGIKSVFQ 305 >gi|313902826|ref|ZP_07836223.1| signal peptide peptidase A [Thermaerobacter subterraneus DSM 13965] gi|313466946|gb|EFR62463.1| signal peptide peptidase A [Thermaerobacter subterraneus DSM 13965] Length = 318 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 68/285 (23%), Positives = 144/285 (50%), Gaps = 22/285 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSW------SSHVEDNSPHVARIAIRGQI------------ 47 ++++ +V++ + + + + +A + I G I Sbjct: 11 RRLQWAFVLVLGLLVAGSVVALLVPGGRDGLGAGTAGQIAVVTIDGPIAAGASAEGLLGA 70 Query: 48 -EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHE 105 + +++ ++++ D + A+++ +++PGGSA A + I A+Q+++ KPV+ + + Sbjct: 71 VVGADDIVSQLQQAREDPAVAAVVIRMNTPGGSAAAAQEIGVAVQRLREAGKPVVVSIGD 130 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 + AS GY I+ ++ IVA SL GSIGV+ + + + +KLG+ ++++KS P K S Sbjct: 131 LGASGGYWIAAMADRIVANPASLTGSIGVIMEVTHYEDLYEKLGIDVETIKSGPFKDIGS 190 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 + + +++Q +V+ Y FV +V+ R + ++ L L+DGR++TG +AK GL+D Sbjct: 191 ATRPLTAEERRLLQGLVNDIYQQFVDVVARGRGMSRERVLELADGRVFTGRQAKAEGLVD 250 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270 +G E+ L + ++ ++ P + L+ L S Sbjct: 251 QLGTFEDAADLAAQLAGLED-YELIEYGP-SSPLQDLLRWLGASG 293 >gi|284037297|ref|YP_003387227.1| signal peptide peptidase SppA, 67K type [Spirosoma linguale DSM 74] gi|283816590|gb|ADB38428.1| signal peptide peptidase SppA, 67K type [Spirosoma linguale DSM 74] Length = 589 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 69/249 (27%), Positives = 115/249 (46%), Gaps = 10/249 (4%) Query: 28 SSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGG 78 + S +A I G I S+ ++E + + DD A+++ ++S GG Sbjct: 298 TESEGTGSSRIAVIVASGDIQSGKSGENSIGSETIVEELRKARLDDKVKAIVLRVNSGGG 357 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 SA A + ++R +Q + KPVI + + AAS GY + + IVA ++ GSIGV Sbjct: 358 SALASDVMYREVQLARKSKPVIGSMSDYAASGGYYMLMGCDKIVAQPNTITGSIGVFSLL 417 Query: 139 PYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + F DKLGV+ VK++ P+ E+ P Q MQ + Y F + R Sbjct: 418 FNTENFFKDKLGVTYDRVKTNTNADFPTGTHEMTPFQKQTMQRATERIYAEFTGKAAAGR 477 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 +P D ++ GR+WTG++ K +GL+D +GG ++ + + + P K Sbjct: 478 KLPIDSLRAIAGGRVWTGSQGKALGLVDQLGGLDDAVKLAAQTAKLKEGDYKLKYQPRKK 537 Query: 258 YWFCDLKNL 266 +F L Sbjct: 538 EFFEQLMMS 546 Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 50/300 (16%), Positives = 103/300 (34%), Gaps = 25/300 (8%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIR---------------GQIEDSQE 52 + + L L+ L S V ++ + G I + Sbjct: 17 LFSFVGFLLLIGLGTALSSSDKKTTVKENTVLKLDLDKPIEERSVDNPFKGFGPISGGGD 76 Query: 53 ------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 L + ++ DD + + SP + E I A+ K K + E Sbjct: 77 AIGLIELKQTLKEAKDDDKIKGIYLQTESPAAGWASLEEIRNALIDFKQSKKFVYAYAET 136 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 GY I+ ++ I + G+ + + K LDKLG+ + K K+ P Sbjct: 137 MTEKGYYIASVADKIYLNPAGDLEWNGLNAELSFFKGTLDKLGIKPEIFKVGEFKSAVEP 196 Query: 167 F--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGL 223 F +++ + + ++S + +++SRN+ D +D I A+A + L Sbjct: 197 FIREDMSDPNRKQVNSFLNSVNDHMLVRIAQSRNLRVDSLKRYADNLTIQKPADALRTKL 256 Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 + +G Q+E+ + +KI ++ Y + + I ++ + Sbjct: 257 VTNIGYQDELESVIKKQLGVDEKKKI-NYVSLSKYENSEKVDTESEGTGSSRIAVIVASG 315 >gi|104780778|ref|YP_607276.1| peptidase SppA [Pseudomonas entomophila L48] gi|95109765|emb|CAK14470.1| putative peptidase SppA [Pseudomonas entomophila L48] Length = 327 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 67/294 (22%), Positives = 131/294 (44%), Gaps = 18/294 (6%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIE 58 + K+ T + ++ L + H A + +RG I D + +++ + Sbjct: 41 IFFKLLTFVYLFGMLALFTPLMDVDKAASRSGSHTALVEVRGVIADQEPASADNIVKSLR 100 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT---EVHEMAASAGYLIS 115 +D A+++ ++SPGGS ++ I++++ P I + ++ AS Y I+ Sbjct: 101 EAFKDSKTKAVVMRINSPGGSPVQAGYVYDEIRRLRGEYPAIKLYAVITDLGASGAYYIA 160 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I A + SLVGSIGV + KLGV ++ + KA PFS P+ Sbjct: 161 SAADEIYADKASLVGSIGVTAAGYGFVGAMGKLGVERRTYTAGEHKAFLDPFSPQKPEET 220 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 Q V+D+++ F+ +V + R L G IW+G +AK++GL+D +G V Sbjct: 221 AFWQGVLDTTHRQFIAVVKQGRGERLKDKEHPELFSGLIWSGEQAKELGLVDGLGSASYV 280 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + +++ D+ ++ + K L S + + + + + L Sbjct: 281 AREIVG------EKELVDFTVQESPFDRFSKRLGAS--VAERLSMYMGFQGPSL 326 >gi|86151511|ref|ZP_01069726.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. jejuni 260.94] gi|157414382|ref|YP_001481638.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. jejuni 81116] gi|315123672|ref|YP_004065676.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841858|gb|EAQ59105.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. jejuni 260.94] gi|157385346|gb|ABV51661.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. jejuni 81116] gi|307747028|gb|ADN90298.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. jejuni M1] gi|315017394|gb|ADT65487.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315930942|gb|EFV09918.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. jejuni 327] Length = 298 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 66/275 (24%), Positives = 130/275 (47%), Gaps = 2/275 (0%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64 +K I T + L+ + + S++ N ++ RI ++G+I DS ++E+I D Sbjct: 15 IKFINTYFKTFVLLLIVIWILMPSANSSSNLANLERIDLKGEIFDSSAVLEKIINAKNDS 74 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 + ++ + SPGG+ + AI+ +K +KPV+ AS YL +N I+A Sbjct: 75 NIKGVLFVVDSPGGAFAPSMELALAIKDLKIKKPVLVYASGTMASGSYLAGVGANKILAN 134 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 S +GSIGV+ Q + +KLG+ +++++ K+ + N +Q ++D Sbjct: 135 PASFIGSIGVIMQGADLSGLANKLGIKEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQ 194 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 SY F V++ R + +K ++ R++ A+AK++GLID + E + L L Sbjct: 195 SYDLFTGFVAKERALDLNKKDQWANARVFLAAKAKELGLIDELSNYENAKKELEKLANVS 254 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 + + + + L+ + S + + I + Sbjct: 255 N--PVWKEEDKIDKFLNRLEGQTSSLISKSLIEIA 287 >gi|52841976|ref|YP_095775.1| signal peptide peptidase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629087|gb|AAU27828.1| signal peptide peptidase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 318 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 76/291 (26%), Positives = 128/291 (43%), Gaps = 23/291 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWS-------SHVEDNSPHVARIAIRGQIEDS-----QEL 53 +K + ++++ +++ +VY S+ + + H+ I I G+I DS Sbjct: 30 RKRRWKWIIRAIILAVLVYSSYKIVSVAKTTEASKDKEHIGLIDINGEIADSSSASADNF 89 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASA 110 + IE+ R ALIV ++SPGGS E I+ + + +K +M ASA Sbjct: 90 TKGIEKAYRSKGLKALIVRINSPGGSPVQAEYIYNVLQYYKSLKPNIKTYAVCVDMCASA 149 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 Y ++ ++ I A+ S+VGSIGVL+ L KLG+S + S KA PFS Sbjct: 150 AYYVAVGADEIYASPASMVGSIGVLYNGFGFVDALQKLGISRRLQTSGVNKAFLDPFSPT 209 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + +Q ++D + F+ V E R G WTG +A GLID Sbjct: 210 TEFQKEKLQTMLDIVHKQFITRVKEGRGNRLHVDDETFSGLFWTGEQALASGLIDGYASS 269 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 ++ + + I I D+ +N + KNL + + D +P++ Sbjct: 270 GQLAREVIK------ITDIVDYTYKQNVFDRLTKNLGTA--MADELPVILG 312 >gi|312962571|ref|ZP_07777061.1| peptidase S49, SppA [Pseudomonas fluorescens WH6] gi|311283151|gb|EFQ61742.1| peptidase S49, SppA [Pseudomonas fluorescens WH6] Length = 327 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 67/294 (22%), Positives = 122/294 (41%), Gaps = 18/294 (6%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIE 58 + K+ T +L ++ L + + A I +RG I D + ++ + Sbjct: 41 IFFKLLTFTYLLLMLALFSPLMDMEKSATRGAHYTALIEVRGVIADKEPASADNIVGSLR 100 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAGYLIS 115 D +I+ ++SPGGS ++ I++ + + + ++ AS Y I+ Sbjct: 101 AAFEDPKVKGVILRINSPGGSPVQSGYVYDEIRRLRGLHPDIKLYAVISDLGASGAYYIA 160 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I A + SLVGSIGV ++KLGV ++ S KA PF Sbjct: 161 SAADQIYADKASLVGSIGVTAAGYGFVGTMEKLGVERRTYTSGEHKAFLDPFQPQKADET 220 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 Q Q V+D+++ F+ V + R L G IW+G +A +GLID +G V Sbjct: 221 QFWQGVLDTTHRQFIASVKQGRGDRLKDKEHPELFSGLIWSGEQALPLGLIDGLGSASSV 280 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + + + D+ ++ + K L S + + + L + L Sbjct: 281 ARDVIG------EKDLVDFTVEESPFDRFSKKLGAS--VAEKLALYMGFQGPSL 326 >gi|149175995|ref|ZP_01854612.1| SppA [Planctomyces maris DSM 8797] gi|148845149|gb|EDL59495.1| SppA [Planctomyces maris DSM 8797] Length = 343 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 129/269 (47%), Gaps = 8/269 (2%) Query: 27 WSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 + + + S +A I+I G I ++ ++E I+ D +++ + SPGG Sbjct: 65 FETGDQFASDKIAIISITGTIMPPFTERILESIKTAHEDKQVKGILLEIDSPGGLVADSH 124 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI---IVAAETSLVGSIGVLFQYPYV 141 I+ + +++ +KP++ + MAAS GY ++ + I A T+ GS+GV+ + Sbjct: 125 QIYHRLVELRKKKPIVVSMKRMAASGGYYVAMGAGEEGVIFAEPTTWTGSLGVIIPRFDL 184 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI-P 200 +K+GV +K+ K +PF E+ + + ++D SY F+ +++++R Sbjct: 185 SGLAEKVGVVSDPLKTGEFKDALNPFREMTQRERDIWDHILDESYQRFLNIITDNRKDLD 244 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 Y++ L+ G+I+ +A++ GLID +G QE+ L + + +R I+ +P Sbjct: 245 YEQVKKLATGQIYPATDARENGLIDEIGYQEDALARLQEMTNLKKVRVIRYRHPV--TLA 302 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 L + +S +E+ + + V Sbjct: 303 DILLGSAEASQVENRKQALLDSTVPRAMY 331 >gi|302340483|ref|YP_003805689.1| signal peptide peptidase SppA, 36K type [Spirochaeta smaragdinae DSM 11293] gi|301637668|gb|ADK83095.1| signal peptide peptidase SppA, 36K type [Spirochaeta smaragdinae DSM 11293] Length = 791 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 68/270 (25%), Positives = 129/270 (47%), Gaps = 25/270 (9%) Query: 37 HVARIAIRGQI----------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 +A I + G I + + I DDS A+++ ++S GG A ++I Sbjct: 503 TIAIINLTGNIHSGEGVPGESVGADTTVRSITLAREDDSIDAIVLRINSGGGGLLASDSI 562 Query: 87 FRAIQKV---KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 RA+ + +N KPV+ + MAAS Y I+ +N++ A ++ GSIGV+ P + Sbjct: 563 ARAVSRTVSGENAKPVVVSMGSMAASGAYYIAARANVVFAYPETMTGSIGVVAITPDISR 622 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L++ +++++VK SP SP+ + + + ++ ++ S Y FV V++ R++ + Sbjct: 623 LLEEHKIAVETVKQSPEADFGSPYRPLLAEEREKIKAMIASGYDHFVENVADGRDMKREN 682 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ GR+W+G+ A++ GL+D +GG + + L Q ++ D+ P+ Sbjct: 683 VERIAQGRVWSGSAAQEKGLVDEIGGMDAAVKRAAELSGRQGAIELADYTIPERILRLPF 742 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 +P T GL +VW P Sbjct: 743 ------------LPPSLVTAYHGLGSVWLP 760 Score = 68.9 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 80/213 (37%), Gaps = 7/213 (3%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 +E I + ++ D +I P S + ++ + + + + A + Sbjct: 288 REHIRSLNELADDPLVDGIIFVNEHPASSLSVARELLVPLKHFREKGKKVMFYFDTADTD 347 Query: 111 GYLISCASN-IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 YL++ A I V GV Y FLD G+ ++ +S P K+ F+E Sbjct: 348 DYLLAAACGAEIYLHPEGSVDLKGVSVTRSYFATFLDTYGIKFENFRSHPYKSGFDTFTE 407 Query: 170 --VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY--DKTLVLSDGRIWTGAEAKKVGLID 225 + + + +V +L+ E R D +L+ G + A GLID Sbjct: 408 GGMREPEREELTVLVADMERAVAQLLQEGRGDRLAGDAGKILAGGPYLRASRALDAGLID 467 Query: 226 VVGGQEEVWQSL--YALGVDQSIRKIKDWNPPK 256 + ++E+ ++ + +DWN P+ Sbjct: 468 KLLYRDEIEDAMDVVETYELPAKSVRRDWNDPR 500 >gi|16800695|ref|NP_470963.1| hypothetical protein lin1627 [Listeria innocua Clip11262] gi|16414114|emb|CAC96858.1| lin1627 [Listeria innocua Clip11262] Length = 337 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 72/280 (25%), Positives = 132/280 (47%), Gaps = 19/280 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76 E +A +++ G I+D+ + ++++E++ DD +++ ++SP Sbjct: 56 EEGGDDTIAVLSVDGTIQDTGDSGSLFGDAGYDHSFFMQQLEQVRNDDYIQGVLLYVNSP 115 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG I I +++ + P + MAAS GY IS ++ I A++ +L GS+GV Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + Q + KLGVS ++KS K S + ++MQ ++D SY+ FV++V+ Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + R + +K ++DGRI+ G +AK+ GLID G QE+ ++L I+ P Sbjct: 236 KGRGMSAEKVRKIADGRIYDGRQAKENGLIDEFGYQEDALEALKKEQGLADATVIQYDVP 295 Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291 + IS + + I L K + ++ Sbjct: 296 EDFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYLY 335 >gi|47096798|ref|ZP_00234380.1| peptidase, U7 family [Listeria monocytogenes str. 1/2a F6854] gi|254898248|ref|ZP_05258172.1| hypothetical protein LmonJ_00495 [Listeria monocytogenes J0161] gi|254912259|ref|ZP_05262271.1| peptidase [Listeria monocytogenes J2818] gi|254936586|ref|ZP_05268283.1| peptidase [Listeria monocytogenes F6900] gi|47014831|gb|EAL05782.1| peptidase, U7 family [Listeria monocytogenes str. 1/2a F6854] gi|258609182|gb|EEW21790.1| peptidase [Listeria monocytogenes F6900] gi|293590236|gb|EFF98570.1| peptidase [Listeria monocytogenes J2818] Length = 337 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 133/280 (47%), Gaps = 19/280 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76 E + +A +++ G I+D+ + ++++E++ DD+ +++ ++SP Sbjct: 56 EEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLEQVRNDDNIQGVLLYVNSP 115 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG I I +++ + P + MAAS GY IS ++ I A++ +L GS+GV Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + Q + KLGVS ++KS K S + ++MQ ++D SY+ FV++V+ Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + R + ++ ++DGRI+ G +AK+ GLID G QE ++L I+ P Sbjct: 236 QGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQENALEALKKEQGLAGATVIQYDAP 295 Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291 + IS + + I L K + ++ Sbjct: 296 GDFSSLFSVTAQKISGQNADISQLIKLTGTLKAPRMMYLY 335 >gi|241763832|ref|ZP_04761877.1| peptidase S49 [Acidovorax delafieldii 2AN] gi|241366876|gb|EER61290.1| peptidase S49 [Acidovorax delafieldii 2AN] Length = 353 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 71/288 (24%), Positives = 123/288 (42%), Gaps = 13/288 (4%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERIS 61 + +++++L+ + +S ++PH A + I+G+I E ++ + Sbjct: 71 FFRLTWLLVALLVAWAALYQSTSGTSKSAPHTAVVDIKGEIASGAEASAELVVAAMRSAL 130 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASN 119 D+ + AL++ ++SPGGS I I ++K + KPV V E ASA Y I+ A++ Sbjct: 131 EDEGSQALVLLINSPGGSPVQAGIINDEIVRLKAKYNKPVYAVVEETCASAAYYIAAAAD 190 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 I + S+VGSIGVL ++KLGV + + + K PFS K Sbjct: 191 EIFVDKASIVGSIGVLMDGFGFTGTMEKLGVERRLLTAGENKGFLDPFSPQTEKQRAYAL 250 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 ++D + F+ +V R T G WTG +A ++GL D +G + V + + Sbjct: 251 TMLDQIHQQFIGVVKAGRGDRLKPTPETFSGLFWTGQQAIEMGLADKLGSLDYVAREVVK 310 Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 I D+ +N +K + L V L Sbjct: 311 ------AEDIIDYTRRENVAERLVKRFGAAMGAGALKALSASNAVPLL 352 >gi|225025425|ref|ZP_03714617.1| hypothetical protein EIKCOROL_02323 [Eikenella corrodens ATCC 23834] gi|224941709|gb|EEG22918.1| hypothetical protein EIKCOROL_02323 [Eikenella corrodens ATCC 23834] Length = 321 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 66/275 (24%), Positives = 122/275 (44%), Gaps = 18/275 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSW---SSHVEDNSPHVARIAIRGQIEDSQE----LIERIER 59 K+ R ++++ + L + S + PH A I + G I + L + +E Sbjct: 39 KLIFRLLLIAFLALYLFAIFGNIGSLNPAAAGPHTAVIRLEGAITAGENQAGKLRQGLEA 98 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK---PVITEVHEMAASAGYLISC 116 ++ +I+ +SPGGS +R I++++ PV +M AS Y I+ Sbjct: 99 AYKNKQVRGIIIRANSPGGSPVVSGVAYREIRRLRAEHPGIPVYVVAEDMCASGCYYIAA 158 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 A++ I A ++S+VGSIGV+ + + +G+ + + K PFS P+ Sbjct: 159 AADKIYADQSSIVGSIGVVGSSFDLTGLMHNMGIQRRQRTAGSNKGMGDPFSPETPEQTA 218 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 + Q ++D + F++ V + R ++ L GR++TG EA K GLID +G V Sbjct: 219 IWQGMLDDIHQQFIKAVRDGRGKRLNEADNPDLFSGRVYTGNEALKTGLIDGLGDIYSVS 278 Query: 235 QSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 + + ++ D+ P + K + S Sbjct: 279 RDIIK------APELVDYTPADDISRLFSKGVGAS 307 >gi|325924321|ref|ZP_08185865.1| signal peptide peptidase SppA, 67K type [Xanthomonas gardneri ATCC 19865] gi|325545186|gb|EGD16496.1| signal peptide peptidase SppA, 67K type [Xanthomonas gardneri ATCC 19865] Length = 632 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 65/268 (24%), Positives = 123/268 (45%), Gaps = 13/268 (4%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 D+ P VA + G+I + + + D+ A+++ + SPGG +A Sbjct: 330 DSRPQVAVVVAAGEISGGEQPAGRIGGESTAALLRQARDDEEVKAVVLRVDSPGGEVFAS 389 Query: 84 EAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I R + + + KPV+ + ++AAS GY IS ++ I A +++ GSIG+ P + Sbjct: 390 EQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGSIGIFGMVPNLT 449 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LDK+GV V ++ ++P A Q++Q V++ Y F V+++R+ D Sbjct: 450 RALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTGKVAQARHQSVD 509 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR-KIKDWNPPKNYWFC 261 ++ GR+W+GA+AK+ GL+D GG +E + +++ P + Sbjct: 510 AIDKVARGRVWSGAQAKQHGLVDAFGGMQEAVADAADRAKLSKGKFRVRYVEKPATPFSQ 569 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + S + + + + A Sbjct: 570 FMSGFAGSRMGAWMLG--DSAMARAMLA 595 Score = 68.5 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 47/288 (16%), Positives = 100/288 (34%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRGQIEDS------ 50 M F + I L + +++ + + P I G + + Sbjct: 21 MNFTRRLIFNLAFFGFLFLMLLLFVVAIARGDGTKPLAERTTLVINPEGTLVEQFSADPV 80 Query: 51 ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQ 91 ++L+ IE +D ++++L S +A + + A+Q Sbjct: 81 SRSLAKAVGDKSAEEVQLRDLVRVIEAAGKDRKIERVLLNLDKFQPSGFASQREVAAALQ 140 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGV 150 K++ I E + YL++ +N + V G+ ++ + + DKLGV Sbjct: 141 KLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGV 200 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK----T 204 + + K+ P+ + A + ++ + ++ V +R + + Sbjct: 201 DVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWQRYLADVGTARKLTPAQLTAGI 260 Query: 205 LVLSDGRIWTGAE----AKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L +G G + A + L+D + +EEV L GV S Sbjct: 261 DTLPEGVTAAGGDLAKFALQQKLVDGLKTREEVDALLTKRGVADSDAD 308 >gi|33863632|ref|NP_895192.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus marinus str. MIT 9313] gi|33635215|emb|CAE21540.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus marinus str. MIT 9313] Length = 270 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 67/265 (25%), Positives = 131/265 (49%), Gaps = 6/265 (2%) Query: 33 DNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + +A I I G I + + +++ I+ + + AL++ + SPGG+ + I A+ Sbjct: 8 KSRRRIAHITIDGAISGATRERVLKAIKEVEERE-FPALLLRIDSPGGTVGDSQEIHAAL 66 Query: 91 QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++ + V+ ++AS G + A+ IVA ++ GSIGV+ + + L+++G Sbjct: 67 LRLREKGCHVVASFGNVSASGGVYVGVAAEKIVANPGTITGSIGVILRGNNLSKLLERIG 126 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + ++VKS K SP + + Q++Q ++DSSY FV V+E R++ ++ +D Sbjct: 127 IRFETVKSGTYKDILSPDRALTAEERQLLQSLIDSSYEQFVNAVAEGRHLSAEEVRNFAD 186 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFCDLKNLSI 268 GR+++G +A ++GL+D +G +E + L + PK L + Sbjct: 187 GRVFSGTQAHELGLVDELGDEEHARKLAAKLADLDEANTQTIKLGRPKKRIAGFLPGSKL 246 Query: 269 SSLLEDTIPLMKQTKVQGLWAVWNP 293 S L + + L Q LW ++ P Sbjct: 247 LSKLAEFLNLELGNNGQVLW-LFLP 270 >gi|15607042|ref|NP_214424.1| proteinase IV [Aquifex aeolicus VF5] gi|2984291|gb|AAC07815.1| proteinase IV [Aquifex aeolicus VF5] Length = 283 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 128/238 (53%), Gaps = 5/238 (2%) Query: 37 HVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-N 95 +A + + G I + L+ +IER+ + AL++ + SPGGS A + I+RAI++ K Sbjct: 33 RIAVLKLSGVIVNPYPLVNKIERLKDSKNVVALVLRVDSPGGSVGASQEIYRAIERFKSA 92 Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 KPV+ + +AAS GY +S A N I A E ++ GSIGV+ Q+ K ++KLG+ ++ Sbjct: 93 GKPVVISMGNVAASGGYYVSAAGNYIFANEGTITGSIGVIIQHVAYKKLVEKLGIEATAI 152 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR--NIPYDKTLVLSDGRIW 213 K+ K SPF E+ + + +Q++V+ + F++ + + R I +K ++DGRI+ Sbjct: 153 KTGKFKDTLSPFRELTQEEKEYLQNLVNEALEQFIQAILKYRSNKISEEKLREIADGRIF 212 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 TG +A ++GL+D +G + + L + + + + + L + + Sbjct: 213 TGRQALELGLVDELGSLYDAIEKAKELSGYRDAKPV--FIQEEKSLLKRLVGADLEEI 268 >gi|121613641|ref|YP_999794.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. jejuni 81-176] gi|167004769|ref|ZP_02270527.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. jejuni 81-176] gi|1655731|gb|AAC44524.1| PspA [Campylobacter jejuni subsp. jejuni 81-176] gi|87249010|gb|EAQ71972.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. jejuni 81-176] Length = 298 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 66/275 (24%), Positives = 131/275 (47%), Gaps = 2/275 (0%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64 +K I T + L+ + + S++ N ++ RI ++G+I DS ++E+I D Sbjct: 15 IKFINTYFKTFVLLLIVIWILMPSANSSSNLANLERIDLKGEIFDSSAVLEKIINAKNDS 74 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 + ++ + SPGG+ + AI+ +K +KPV+ AS YL +N I+A Sbjct: 75 NIKGVLFVIDSPGGAFAPSMELALAIKDLKIKKPVLVYASGTMASGSYLAGVGANKILAN 134 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 S +GSIGV+ Q + +KLG+ +++++ K+ + N +Q ++D Sbjct: 135 PASFIGSIGVIMQGADLSGLANKLGIKEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQ 194 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 SY F V++ R + +K ++ R++ A+AK++GLID + E + L L Sbjct: 195 SYDLFTGFVAKERALDLNKKDQWANARVFLAAKAKELGLIDELSNYENAKKELEKLANVS 254 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 + + + + L+ + S + + I ++ Sbjct: 255 N--PVWKEEDKIDKFLNRLEGQTSSLISKSLIEIV 287 >gi|294624143|ref|ZP_06702878.1| protease IV [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601561|gb|EFF45563.1| protease IV [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 633 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 67/268 (25%), Positives = 122/268 (45%), Gaps = 13/268 (4%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 D+ P VA + G+I + + + DD A+++ + SPGG +A Sbjct: 331 DSRPQVAVVVAAGEISGGEQPAGRIGGESTAALLRQARDDDDVKAVVLRVDSPGGEVFAS 390 Query: 84 EAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I R + + + KPV+ + ++AAS GY IS ++ I A +++ GSIG+ P + Sbjct: 391 EQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGSIGIFGMVPNLT 450 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LDK+GV V ++ ++P A Q++Q V++ Y F V+++R+ D Sbjct: 451 RALDKIGVHTDGVATTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTGKVAQARHQSVD 510 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261 ++ GR+W+GA+AK+ GL+D GG E + +++ P + Sbjct: 511 AIDKVARGRVWSGAQAKERGLVDAFGGMSEAVADAADRAKLSRGKFRVRYVEKPATPFSQ 570 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + S + + + L A Sbjct: 571 FMSGFAGSRMGAWMLS--DSGMARALLA 596 Score = 66.6 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 81/208 (38%), Gaps = 12/208 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQKVKNRKPVITEVHEMAAS 109 ++L+ IE +D ++++L S +A + + A+QK++ I E + Sbjct: 99 RDLVRVIEAAGKDRKIERVLLNLDKLQPSGFASQREVAAALQKLRASGKQIVAFSESMSQ 158 Query: 110 AGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167 YL++ +N + V G+ ++ + + DKLGV + + K+ P+ Sbjct: 159 GQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGVDVHLFRVGEYKSAAEPYI 218 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV--------LSDGRIWTGAEA 218 + A + ++ + ++ V +R + + ++ A Sbjct: 219 LDAASADAKEADLFWMNDVWRRYLADVGTARKLSPAQLAAGIDTLPEGVAAAGGDLAKFA 278 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + L+D + +EEV L GV S Sbjct: 279 LQQKLVDGLKTREEVDALLVQRGVADSD 306 >gi|313633075|gb|EFR99981.1| putative signal peptide peptidase SppA [Listeria seeligeri FSL N1-067] Length = 337 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 68/299 (22%), Positives = 138/299 (46%), Gaps = 25/299 (8%) Query: 18 VTLTVVYFSWSSH------VEDNSPHVARIAIRGQIEDSQE--------------LIERI 57 + + F+ ++ + +A +++ G I+D+ E ++++ Sbjct: 37 IAVIDTLFAGTNELTETVIEKAGPSKIAVLSVDGTIQDTGESTSLLGSTGYNHSFFMDQL 96 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLIS 115 E++ D+S +++ ++SPGG I I +++ + P + MAAS GY IS Sbjct: 97 EQVRDDESIKGVLLYVNSPGGGVMESAQIRDKILQIQKERSIPFYVSMGSMAASGGYYIS 156 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 ++ I A++ +L GS+GV+ Q + KLG++ ++KS K S + Sbjct: 157 APADKIFASKETLTGSLGVIMQGYDYSELMKKLGITDNTIKSGAHKDIMSATRPMTEDEK 216 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 ++MQ ++D SY+ FV++V+ R + ++ ++DGRI+ G +AK+ GLID G QE+ Sbjct: 217 KIMQSMIDDSYNEFVQVVASGRGMSEEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALA 276 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291 +L + I+ P + +S + + I L + + ++ Sbjct: 277 ALKKDEKLSNATVIQYDEPTSFSSLFSVAAQKMSGQNADISQLIKLTGTLQAPRMMYLY 335 >gi|329298719|ref|ZP_08256055.1| protease 4 [Plautia stali symbiont] Length = 618 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 123/283 (43%), Gaps = 22/283 (7%) Query: 21 TVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIV 71 +Y+ ++A I G I D +E +I DD A+++ Sbjct: 311 VSIYYYNVKQPTQQDGNIAVILASGAIMDGEESAGNVGGDTTAAQIRDARLDDKIKAIVL 370 Query: 72 SLSSPGGSAYAGEAIFRAIQK-VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 ++SPGGS A EAI + KPV+ + MAAS GY IS ++ IVAA ++L G Sbjct: 371 RVNSPGGSVTASEAIREELAAAHDAGKPVVVSMGGMAASGGYWISTPADYIVAAPSTLTG 430 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIG+ V+ L +GV V +SP+ + + +MQ +++ Y FV Sbjct: 431 SIGIFGVINTVENSLSSIGVHSDGVATSPLADVSTTKALPTEAQQ-LMQLTIENGYRNFV 489 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 LV+ SR+ + ++ G +WTG++AK GL+D +G ++ L Sbjct: 490 GLVAASRHKTPQQIDAIAQGHVWTGSDAKANGLVDALGDFDDAVAKAAELAKVA------ 543 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 P+ W+ D + LL + + Q + VW P Sbjct: 544 ---KPELSWYHDDPGMI--DLLLNQMNASAQAVLPAALKVWLP 581 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 49/317 (15%), Positives = 112/317 (35%), Gaps = 46/317 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVY--FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + F+ + I ++++ ++ ++ S +S E ++ + G + D Sbjct: 19 LNFIREFILNLFLIVLILAGVGIWLQLSSASSSEPVQQGALKVDLSGVLVDKPSVSNRLS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 ++++ I + D + T +++ L GS + + +A+ Sbjct: 79 RISRQLLGASSDRLQENSLFDVVDAIRQAKSDKNITGMVLDLRDFAGSDQPSLQYVGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ I + + + A Y ++ + + + V G Y K LDKL V Sbjct: 139 REFRDAGKPIFALGDSYSQAQYYLASYATKVYLSPQGTVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 S + K+ PF +++P+A V + ++ VS +R I + + Sbjct: 199 SSHVFRVGTYKSAVEPFLRDDMSPEARDADGRWVGQLWQNYLNTVSANRQITPQQLFPGA 258 Query: 209 DGRI--------WTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNP 254 G I T A + L+DV+ + + L D I +N Sbjct: 259 AGIISGLQEVQGDTAKYALENKLVDVLDSRAAADRELVKTFGWDKASNDYRNVSIYYYNV 318 Query: 255 PKNYWFCDLKNLSISSL 271 + + ++S Sbjct: 319 KQPTQQDGNIAVILASG 335 >gi|289578008|ref|YP_003476635.1| signal peptide peptidase SppA, 36K type [Thermoanaerobacter italicus Ab9] gi|289527721|gb|ADD02073.1| signal peptide peptidase SppA, 36K type [Thermoanaerobacter italicus Ab9] Length = 305 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 84/271 (30%), Positives = 139/271 (51%), Gaps = 13/271 (4%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL----------IERIERISRDDS 65 S+V++ V V S + I I G I + + +E+I + D++ Sbjct: 19 SIVSMFVSMPQQDKGVATASNTIGVIMIEGVIGQTTNILGIPQNINDPVEQIRKAQEDNA 78 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP-VITEVHEMAASAGYLISCASNIIVAA 124 A++V ++SPGGSA I++ ++K+K +I + + AAS GY+++ A +IIVA Sbjct: 79 VRAVVVKINSPGGSAAKSIEIYKELKKLKKTGKKIIVSMGDAAASGGYMVAAAGDIIVAN 138 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 ++ GSIGV+ QY + DKLG+ ++KS P K SP ++ P+ +++Q V++ Sbjct: 139 PATITGSIGVIMQYTNYEGLYDKLGLKEITIKSGPYKDIGSPTRDLTPEEKKILQGVIED 198 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 ++ F+ +VSE R +P DK L+DGRI+TG +A KVGL+D +G + Q Sbjct: 199 TFQQFLEIVSEGRKMPIDKVKELADGRIFTGRQALKVGLVDKLGDFYDAVDIAAKEAGMQ 258 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 +K + P L S LED Sbjct: 259 GKPVLKYYATP--TPLSILFGSGAKSNLEDI 287 >gi|22299347|ref|NP_682594.1| protease [Thermosynechococcus elongatus BP-1] gi|22295530|dbj|BAC09356.1| protease [Thermosynechococcus elongatus BP-1] Length = 274 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 133/252 (52%), Gaps = 10/252 (3%) Query: 37 HVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 +AR+ I G I S + +++ ++ I AL+V + SPGG+ + I+ A+++++ Sbjct: 12 QIARLEITGAIAGSTRRRVLKALKTIEE-RGYPALLVRIDSPGGTVGDSQEIYAALKRLQ 70 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 ++ ++ ++AS G I + I+A ++ GSIGV+ + ++ LDK+GVS K Sbjct: 71 SKMKIVASFGNISASGGVYIGMGAQHIMANPGTITGSIGVILRGNNLQRLLDKVGVSFKV 130 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 +KS P K + ++ + ++++QD++D+SY FV+ V+E RN+ + +DGR++T Sbjct: 131 IKSGPYKDILAFDRDLTEEEIRILQDLIDTSYQQFVQTVAEGRNLDVETVRSFADGRVFT 190 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273 G +A +GL+D +G +E+ + L L D K++ PK+ + Sbjct: 191 GEQALALGLVDRLGTEEDARRWLAELAGLDPDKTKVQTIEEPKSPLARLFPRQ------Q 244 Query: 274 DTIPLMKQTKVQ 285 + P Q + Sbjct: 245 ERFPFPWQAGLD 256 >gi|294663994|ref|ZP_06729409.1| protease IV [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606238|gb|EFF49474.1| protease IV [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 633 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 67/268 (25%), Positives = 122/268 (45%), Gaps = 13/268 (4%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 D+ P VA + G+I + + + DD A+++ + SPGG +A Sbjct: 331 DSRPQVAVVVAAGEISGGEQPAGRIGGESTAALLRQARDDDDVKAVVLRVDSPGGEVFAS 390 Query: 84 EAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I R + + + KPV+ + ++AAS GY IS ++ I A +++ GSIG+ P + Sbjct: 391 EQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGSIGIFGMVPNLT 450 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LDK+GV V ++ ++P A Q++Q V++ Y F V+++R+ D Sbjct: 451 RALDKIGVHTDGVATTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTGKVAQARHQSVD 510 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261 ++ GR+W+GA+AK+ GL+D GG E + +++ P + Sbjct: 511 AIDKVARGRVWSGAQAKERGLVDAFGGMSEAVADAADRAKLSRGKFRVRYVEKPATPFSQ 570 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + S + + + L A Sbjct: 571 FMSGFAGSRMGAWMLS--DSGMARALLA 596 Score = 66.6 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 81/208 (38%), Gaps = 12/208 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQKVKNRKPVITEVHEMAAS 109 ++L+ IE +D ++++L S +A + + A+QK++ I E + Sbjct: 99 RDLVRVIEAAGKDRKIERVLLNLDKLQPSGFASQREVAAALQKLRASGKQIVAFSESMSQ 158 Query: 110 AGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167 YL++ +N + V G+ ++ + + DKLGV + + K+ P+ Sbjct: 159 GQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGVDVHLFRVGEYKSAAEPYI 218 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV--------LSDGRIWTGAEA 218 + A + ++ + ++ V +R + + ++ A Sbjct: 219 LDAASADAKEADLFWMNDVWRRYLADVGTARKLSPAQLAAGIDTLPEGVAAAGGDLAKFA 278 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + L+D + +EEV L GV S Sbjct: 279 LQQKLVDGLKTREEVDALLVQRGVADSD 306 >gi|289434866|ref|YP_003464738.1| peptidase, U7 family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171110|emb|CBH27652.1| peptidase, U7 family [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 337 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 67/280 (23%), Positives = 132/280 (47%), Gaps = 19/280 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76 + +A +++ G I+D+ E ++++E++ D+S +++ ++SP Sbjct: 56 EKAGPSKIAVLSVDGTIQDTGESTSLLGSTGYNHSFFMDQLEQVRDDESIKGVLLYVNSP 115 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG I I +++ + P + MAAS GY IS ++ I A++ +L GS+GV Sbjct: 116 GGGVMESAQIRDKILQIQKERSIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + Q + KLG++ ++KS K S + ++MQ ++D SY+ FV++V+ Sbjct: 176 IMQGYDYSELMKKLGITDNTIKSGAHKDIMSATRPMTEDEKKIMQSMIDDSYNEFVQVVA 235 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 R + ++ ++DGRI+ G +AK+ GLID G QE+ +L + I+ P Sbjct: 236 SGRGMSEEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALAALKKDEKLSNATVIQYDEP 295 Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291 + +S + + I L + + ++ Sbjct: 296 TSFSSLFSVAAQKMSGQNADISQLIKLTGTLQAPRMMYLY 335 >gi|153829820|ref|ZP_01982487.1| protease IV [Vibrio cholerae 623-39] gi|148874679|gb|EDL72814.1| protease IV [Vibrio cholerae 623-39] Length = 616 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 14/287 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 + + ++ +A + G I D + + D + A Sbjct: 307 IGYYEYKTTIKPTTLTDANDIAIVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I I+ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + L+ LG+ V ++P + + + A +Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGLTTGLTQGAKDAIQLGIEHGYQ 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F+ LV+E R + L+ GR+WT +A+ +GL+D +G ++ L + Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + +++ P + DL SL D + + +Q L W Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSTLLPKSLQPLAVEWQ 591 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 51/328 (15%), Positives = 114/328 (34%), Gaps = 40/328 (12%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51 + F+ + +LS+ + +Y + + A + + G I + Sbjct: 19 ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 +++E + D++ T L+++ P + I +AI + Sbjct: 79 FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF +++ A + + + +V V+ +R I + Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEQF 258 Query: 212 I-----WTGAEA---KKVGLIDVVGGQEEVWQSLYALGVDQSIRK---IKDWNPPKNYWF 260 + G A KKVGL+D + +++V Q+L I + Sbjct: 259 VTQLKEVNGDLAALSKKVGLVDELATRQQVRQTLAETFGSDGKDSYNAIGYYEYKTTIKP 318 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288 L + + +++ + +M ++ +G Sbjct: 319 TTLTDANDIAIVVASGAIMDGSQPRGTV 346 >gi|288957927|ref|YP_003448268.1| protease IV [Azospirillum sp. B510] gi|288910235|dbj|BAI71724.1| protease IV [Azospirillum sp. B510] Length = 585 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 80/287 (27%), Positives = 135/287 (47%), Gaps = 19/287 (6%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATAL 69 Y + + + N P +A I G I + +++ IE + D A+ Sbjct: 278 YLAVAGNPNGNGPTIALINAVGTITGGESGKPATGGLSAGSDTIVQAIEEAADDPDVRAI 337 Query: 70 IVSLSSPGGSAYAGEAIFRAI-QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 + + S GG+ A EAI RA+ + ++ KPVI + + AAS GY I+ A++ IVA+ +L Sbjct: 338 LFRIDSGGGAVSASEAIRRALVRARQSGKPVIASMGDAAASGGYWIALAADRIVASPATL 397 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIGV+ + DKLGV V+S+ SP + + ++D +Y Sbjct: 398 TGSIGVVAGKFAIGGLSDKLGVHWDGVRSARNAGMWSPLRPFGDSESERLTAIIDDTYAN 457 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 F++ V+E+R + D+ ++ GR+WTGA+A+ +GLID +GGQE+ Sbjct: 458 FLQRVAEARRMTPDQARGIAKGRVWTGAQARDLGLIDDLGGQEQALILARTAAGLAPDAP 517 Query: 249 IK--DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 + + PPK+ L L+ L + +++ L A P Sbjct: 518 VTLAPYPPPKSVTDELLDLLAGKGNLVGALAT--AAELRPLLAELRP 562 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 91/269 (33%), Gaps = 22/269 (8%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + F ++ ++L +TVV + V + + G + +S Sbjct: 4 VRFFVRLFALIGLLLVGGAVTVVVLAVRHEPALPDAVVLELDLTGPLAESDGGRIDSLFE 63 Query: 52 ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT---- 101 ++++ ++ RD ++ + + AI++ ++ Sbjct: 64 QRTTLRQVLDALDAGRRDPRVKGVLARFGDDAVGFAQTQELRGAIERFRSSGRFAVAFAE 123 Query: 102 -EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160 + YL++ A + + +G G+ + P+ + LD+LGV + Sbjct: 124 EYGGAGPGNRAYLLASAFDEVWLQPMGTLGITGLSMELPFAREALDRLGVQPSFAQREEY 183 Query: 161 KAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEA 218 K+ F+ + P +MM+ +V + V +++SR + D EA Sbjct: 184 KSFAETFTTAGMTPANREMMEGLVADLSNQLVDGIAKSRRLAPATVRAAMDKAPLLSREA 243 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 +D +G +E D + Sbjct: 244 LDQKFVDKLGYADEARDEALKRAGDGAET 272 >gi|218548665|ref|YP_002382456.1| protease 4 [Escherichia fergusonii ATCC 35469] gi|218356206|emb|CAQ88823.1| protease IV (signal peptide peptidase) [Escherichia fergusonii ATCC 35469] Length = 711 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 69/281 (24%), Positives = 122/281 (43%), Gaps = 15/281 (5%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATAL 69 ++ ++ + V+ + + G I D +E +I D A+ Sbjct: 403 AISFYDYALKTPVKTPE-MIGVVFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAI 461 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 ++ ++SPGGS A E I + K KPV+ + MAAS GY IS +N I+A ++L Sbjct: 462 VLRVNSPGGSVTASEVIRSELAAAKAAGKPVVVSMGGMAASGGYWISTPANYIIANPSTL 521 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIG+ V+ LD +GV V +SP+ S MQ +++ Y Sbjct: 522 TGSIGIFGVINTVENSLDSIGVHTDGVSTSPLANMSVTQSLPTEVQQM-MQLSIENGYKR 580 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 F+ LV+++R ++ ++ G +WTG +AK GL+D +G ++ L Sbjct: 581 FITLVADARKSTPEQVDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWS 639 Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 I + ++ + ++S S + +P Q + A Sbjct: 640 INYYQDEPTFFDMVVDSMSGS--VRAMLPQAIQAMLPAPLA 678 Score = 97.4 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 101/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKTR-YVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L L+ + + S + + S + I G I D Sbjct: 112 LNFVREMVLNLLFIFLVLIGVGIWMQVSSNGSSDSASRGALLLDISGVIVDKPSNNHRLG 171 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G+ + I +A+ Sbjct: 172 VIGRQLFGASSERLQENSLFDIVNTIRQAKDDSNITGIVLDLENFAGADQPSMQYIGKAL 231 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + + E Y ++ +N I + V G Y K LDKL V Sbjct: 232 REFRDSGKPVIAIGESYTQGQYYLASFANKIWLSPQGTVDLHGFATNGLYYKSLLDKLKV 291 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + V + ++ ++ +R I + Sbjct: 292 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWVGELWQNYLNTIAANRQISAQQVFPGA 351 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A L+D +G +V ++L K Sbjct: 352 QAMIADLTKLGGDTAQYALDHKLVDALGSSADVEKALTKQFGWSKADK 399 >gi|330810999|ref|YP_004355461.1| peptidase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379107|gb|AEA70457.1| putative peptidase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 329 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 63/278 (22%), Positives = 112/278 (40%), Gaps = 16/278 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIE 58 + K+ T + + L S + A I I G I D + ++ + Sbjct: 43 IFFKLLTFTYLFVALALFTPLMDMEKSAVAGSAYTALINIEGMIADKEPASADNIVGSLR 102 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAGYLIS 115 D +++ ++SPGGS ++ I + + V + ++ AS Y I+ Sbjct: 103 AAFEDSKVKGVVLRINSPGGSPVQSGYVYDEIVRLRALHPDIKVYAVISDLGASGAYYIA 162 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I A + SLVGSIGV ++KLGV + S K+ PF P+ Sbjct: 163 SAADQIYADKASLVGSIGVTAAGYGFVGTMEKLGVERRVYTSGEHKSFLDPFQPQKPEET 222 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 Q V+D+++ F+ V + R L G +W+G +A +GLID +G V Sbjct: 223 AFWQSVLDTTHKQFIASVKKGRGERLKDKEHPELFSGLVWSGEQALPLGLIDGLGSASSV 282 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 + + + + D+ ++ + K L S Sbjct: 283 ARDVIGQ------KDLVDFTIEESPFDRFSKKLGASIA 314 >gi|313499938|gb|ADR61304.1| Signal peptide peptidase SppA, 36K type [Pseudomonas putida BIRD-1] Length = 329 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 67/276 (24%), Positives = 128/276 (46%), Gaps = 16/276 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIE 58 + K+ T + ++ L ++ H A + +RG I D + +++ + Sbjct: 43 IFFKLLTFVYLFGILALFSPLMDMDKAASRSASHTALVEVRGVIADQEAASADNIVKSLR 102 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT---EVHEMAASAGYLIS 115 +DD A+++ ++SPGGS ++ I++++ P I + ++ AS Y I+ Sbjct: 103 EAFKDDKTKAVVMRINSPGGSPVQAGYVYDEIRRLRAEYPAIKLYAVIADLGASGAYYIA 162 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I A + SLVGSIGV ++KLGV ++ S KA PFS P+ Sbjct: 163 SAADEIYADKASLVGSIGVTAAGYGFVGTMEKLGVERRAYTSGEHKAFLDPFSPEKPEET 222 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 + Q V+D+++ F+ +V + R L G IW+G +AK +GL+D +G V Sbjct: 223 RFWQGVLDTTHQQFIAMVKQGRGERLKDKQHPELFSGLIWSGEQAKALGLVDGLGSASYV 282 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 + + +++ D+ ++ + K + S Sbjct: 283 AREIVG------EKELVDFTVQESPFDRFSKRVGAS 312 >gi|187250455|ref|YP_001874937.1| signal peptide peptidase SppA, 36K type [Elusimicrobium minutum Pei191] gi|186970615|gb|ACC97600.1| Signal peptide peptidase SppA, 36K type [Elusimicrobium minutum Pei191] Length = 371 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 89/315 (28%), Positives = 145/315 (46%), Gaps = 32/315 (10%) Query: 6 KKIKTRYVMLSLVTLTVVYFSW-------------------SSHVEDNSPHVARIAIRGQ 46 K + V+L V+ + SS VA I IRG Sbjct: 55 KNWLSVLVLLFFVSSISGLYIIFSGGICKKETKTESSLPRLSSQARHGETGVAVIRIRGV 114 Query: 47 IE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-- 94 I + + RI + D+ A+I+ ++SPGG+ A + I+ AI + Sbjct: 115 ITEPQASSWRDQSASSIARRIRTTADKDNVKAIIIDINSPGGTVAAVQDIYNAILYARQV 174 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 K V+ +++AS GY I+ A + IVA +L GSIGV+FQ + ++K+GVS + Sbjct: 175 KNKKVVALFRDVSASGGYYIAVACDKIVAQPGTLTGSIGVIFQTGNFEGLMNKIGVSFST 234 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-NIPYDKTLVLSDGRIW 213 +KS K SP+ ++ + ++Q+++D SY+ F+ +V R N+ + V +DGRI+ Sbjct: 235 IKSGQHKDIGSPYRKMTEEERTLLQELIDDSYNQFLDVVKTGRPNMNPVELKVYADGRIF 294 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273 TG +A +GLID +GG+EE + L + + I + W L S L+ Sbjct: 295 TGRKAFSIGLIDALGGEEEALKIAGELADIKDPKIISNRPTTFREWLSSLDPEMSSKTLD 354 Query: 274 DTIPLMKQTKVQGLW 288 I + KV LW Sbjct: 355 RQIEAISSPKVAYLW 369 >gi|148926874|ref|ZP_01810552.1| protease [Campylobacter jejuni subsp. jejuni CG8486] gi|205356450|ref|ZP_03223214.1| protease [Campylobacter jejuni subsp. jejuni CG8421] gi|145844451|gb|EDK21559.1| protease [Campylobacter jejuni subsp. jejuni CG8486] gi|205345637|gb|EDZ32276.1| protease [Campylobacter jejuni subsp. jejuni CG8421] Length = 298 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 66/275 (24%), Positives = 130/275 (47%), Gaps = 2/275 (0%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64 +K I T + L+ + + S++ N ++ RI ++G+I DS ++E+I D Sbjct: 15 IKFINTYFKTFVLLLIVIWILMPSANSSSNLANLERIDLKGEIFDSSAVLEKIINAKNDS 74 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 + ++ + SPGG+ + AI+ +K +KPV+ AS YL +N I+A Sbjct: 75 NIKGVLFVIDSPGGAFAPSMELALAIKDLKIKKPVLVYASGTMASGSYLAGVGANKILAN 134 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 S +GSIGV+ Q + +KLG+ +++++ K+ + N +Q ++D Sbjct: 135 PASFIGSIGVIMQGADLSGLANKLGIKEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQ 194 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 SY F V++ R + +K ++ R++ A+AK++GLID + E + L L Sbjct: 195 SYDLFTGFVAKERALDLNKKDQWANARVFLAAKAKELGLIDELSNYENAKKELEKLANVS 254 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 + + + + L+ + S + + I + Sbjct: 255 N--PVWKEEDKIDKFLNRLEGQTSSLISKSLIEIA 287 >gi|86154048|ref|ZP_01072249.1| PspA [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842462|gb|EAQ59676.1| PspA [Campylobacter jejuni subsp. jejuni HB93-13] Length = 298 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 66/275 (24%), Positives = 130/275 (47%), Gaps = 2/275 (0%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64 +K I T + L+ + + S++ N ++ RI ++G+I DS ++E+I D Sbjct: 15 IKFINTYFKTFVLLLIVIWILMPSANSSSNLANLERIDLKGEIFDSSAVLEKIINAKNDS 74 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 + ++ + SPGG+ + AI+ +K +KPV+ AS YL +N I+A Sbjct: 75 NIKGVLFVIDSPGGAFAPSMELALAIKDLKIKKPVLVYASGTMASGSYLAGVGANKILAN 134 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 S +GSIGV+ Q + +KLG+ +++++ K+ + N +Q ++D Sbjct: 135 PASFIGSIGVIMQGADLSGLANKLGIKEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQ 194 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 SY F V++ R + +K ++ R++ A+AK++GLID + E + L L Sbjct: 195 SYDLFTGFVAKERALDLNKKDQWANARVFLAAKAKELGLIDELSNYENAKKELEKLANVS 254 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 + + + + L+ + S + + I + Sbjct: 255 N--PVWKEEDKIDKFLNRLEGQTSSLISKSLIEIA 287 >gi|330861582|emb|CBX71777.1| protease 4 [Yersinia enterocolitica W22703] Length = 510 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 67/273 (24%), Positives = 123/273 (45%), Gaps = 18/273 (6%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 + +A + G I D L +I + D A+I+ ++SPGGS Sbjct: 210 TPTPQQGEQIAVLFANGAIMDGPQTPGNVGGDALAAQIRQARLDPKIKAVILRVNSPGGS 269 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + ++ KP++ + MAAS GY IS +N I+A ++L GSIG+ Sbjct: 270 VSASELIRTELAALRAANKPLVVSMGGMAASGGYWISTPANYIIANPSTLTGSIGIFGVI 329 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L+ +GV V +SP+ ++ P+ QMMQ +++ Y F+ LV+ +R+ Sbjct: 330 NTFQNTLESIGVHTDGVATSPLANVSVT-KDLPPEFSQMMQINIENGYKTFIDLVASARH 388 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256 ++ ++ G +W G +AK GL+D +G ++ + + L + + D Sbjct: 389 KTPEQVDQIAQGHVWIGIDAKNNGLVDQLGDFDDAVKKVAELAKLKTWQLNWFVD----- 443 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 DL +S+ ++ +P Q + + Sbjct: 444 EPSLSDLIFGQMSASVQAMLPTAIQAWLPAPIS 476 Score = 73.9 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 82/226 (36%), Gaps = 17/226 (7%) Query: 63 DDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 D++ T +++SL G+ + I +A+++ ++ I + E + Y ++ +N I Sbjct: 1 DNNITGMVLSLGDFTGADQPSLQYIGKALREFRDSGKPIYAIGESYSQTQYYLASFANKI 60 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQ 179 + V G Y K L+KL V+ + K+ P +++P A + Sbjct: 61 YLSPHGTVALHGFASNNLYYKSLLEKLKVTTNIFRVGTYKSAVEPMIRDDMSPAAREADT 120 Query: 180 DVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + + ++ V+ +R + ++ L A L+D + + Sbjct: 121 RWIGGLWQNYLTAVAANRQLTPEQLFPGGAGVVSGLQAAGGSQAQYALSSKLVDQLATRP 180 Query: 232 EVWQSLY------ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 E+ L D + I D+ P + + ++ Sbjct: 181 EMENELVKAFGWDKKNNDFNYVSIYDYQPTPTPQQGEQIAVLFANG 226 >gi|238751644|ref|ZP_04613134.1| Protease 4 [Yersinia rohdei ATCC 43380] gi|238710206|gb|EEQ02434.1| Protease 4 [Yersinia rohdei ATCC 43380] Length = 616 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 67/273 (24%), Positives = 123/273 (45%), Gaps = 18/273 (6%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 + +A + G I D L +I + D A+I+ ++SPGGS Sbjct: 317 TPAPQQGEQIAVLFANGAIMDGPQTPGNVGGDALAAQIRQARLDPKIKAVILRVNSPGGS 376 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + ++ KP++ + MAAS GY IS +N I+A ++L GSIG+ Sbjct: 377 VSASELIRSELAALRAANKPLVVSMGGMAASGGYWISTPANYIIANPSTLTGSIGIFGVI 436 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L+ +GV V +SP+ ++ P+ QMMQ +++ Y F+ LV+ +R+ Sbjct: 437 NTFQNSLESIGVHTDGVATSPLANVTVT-KDLPPEFSQMMQINIENGYKTFIDLVATARH 495 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256 ++ ++ G +W G +AK GL+D +G ++ + + L + + D Sbjct: 496 KTPEQVDQIAQGHVWIGLDAKNNGLVDQLGDFDDAVKKVAELAKLKTWQLNWFVD----- 550 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 DL +S+ ++ +P Q + + Sbjct: 551 EPSLSDLIFGQMSASVQAMLPAAIQAWLPAPLS 583 Score = 82.7 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 97/293 (33%), Gaps = 44/293 (15%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIE 55 +Y + S + + + G + D +++E Sbjct: 41 IYLQFQSKPAEPVKGALLVNLSGVVVDQPAVNNKLRQWGRELLGASSNRLQENSLFDIVE 100 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 + D + T +++SLS G+ + I +A+++ ++ I + + + Y + Sbjct: 101 TLRLAKSDSNITGVVLSLSDFTGADQPSLQYIGKALREFRDTGKPIYAIGDSYNQSQYYL 160 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172 + +N I + V G Y K L+KL V+ + K+ P +++P Sbjct: 161 ASFANKIYLSPQGAVDLHGFASNNLYYKSLLEKLKVTTNIFRVGTYKSAVEPMIRDDMSP 220 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLI 224 A + + + ++ VS +R + ++ L A L+ Sbjct: 221 AAREADSRWIGGLWQNYLTAVSANRQLTPEQLFPGAAGVISGLQAAGGSPAQYALNSKLV 280 Query: 225 DVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 D + + EV L D + I D+ P + + ++ Sbjct: 281 DQLASRPEVETDLVKTFGWDKKNNDFNYISIYDYQPTPAPQQGEQIAVLFANG 333 >gi|307730546|ref|YP_003907770.1| peptidase S49 [Burkholderia sp. CCGE1003] gi|307585081|gb|ADN58479.1| peptidase S49 [Burkholderia sp. CCGE1003] Length = 334 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 14/275 (5%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSL 73 + V+ + + H A IA+ G+I +++++ +E D +I+ Sbjct: 64 VIWAVFDFSGDKLAASGRHTALIALDGEISADTRANAEDVAAALESAFDDAGTAGVILRC 123 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCASNIIVAAETSLVG 130 +SPGGS I+ +++++ + P I V +M AS GY + A + I + S+VG Sbjct: 124 NSPGGSPVQAGIIYDQMRRLRAKHPSIPLYVVVGDMCASGGYYAAAAGDKIYVDKASIVG 183 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGVL +DKLG+ + S K PFS PK Q Q+++D + F+ Sbjct: 184 SIGVLMDSFGFTGLMDKLGIQRRLHTSGENKGFYDPFSPETPKMDQHAQEMLDQIHAQFI 243 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 V + R +T + G WTG ++ ++GL D G V + L +I Sbjct: 244 EAVRQGRGKRLHETPDMFSGLFWTGEKSVELGLADGFGDANYVARELIK------APEIV 297 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 D+ ++ + + L K+ Sbjct: 298 DYTVKESITDRVARKFGAAVGSGAVHALALGGKLN 332 >gi|152992629|ref|YP_001358350.1| protease IV [Sulfurovum sp. NBC37-1] gi|151424490|dbj|BAF71993.1| protease IV [Sulfurovum sp. NBC37-1] Length = 284 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 69/268 (25%), Positives = 133/268 (49%), Gaps = 2/268 (0%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63 +K + + + + + ++ F +S + ++ I + G I D+ ++++ I++ +D Sbjct: 8 FIKWLGDHFKGMLFLLILLIVFMPTSESKLKPANLQEIKLTGPIMDADKVLKEIDKARKD 67 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 D ++ +++SPGG+ I AI+++K +KPVI + AS Y S +N I+A Sbjct: 68 DDIKGVLFNVNSPGGAVPPSIEICHAIKELKEKKPVIAYASGIMASGSYYASIYANKIIA 127 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 S+VGSIGV+ + P + ++K+GV + VK K +P E PK + ++ + Sbjct: 128 NPGSIVGSIGVIMEAPNLHELMEKVGVGTQIVKQGEYKEAGTPTREWTPKEREELERLTK 187 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 +Y FV V+++R + + + +D I++ AKK GLID + + + + AL Sbjct: 188 DTYELFVSDVAKARGLDVNNSTAYADAHIFSSKRAKKAGLIDEIATKRSAKEQIAALAKV 247 Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSL 271 + + +F DL SI L Sbjct: 248 KE--PVWKEKDKLESFFEDLSTKSILKL 273 >gi|254286923|ref|ZP_04961875.1| protease IV [Vibrio cholerae AM-19226] gi|150423073|gb|EDN15022.1| protease IV [Vibrio cholerae AM-19226] Length = 616 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 14/287 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 + + ++ +A + G I D + + D + A Sbjct: 307 IGYYEYKTTIKPTTLTDANDIAIVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I I+ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + L+ LG+ V ++P + + + A +Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGLTTGLTQGAKDAIQLGIEHGYQ 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F+ LV+E R + L+ GR+WT +A+ +GL+D +G ++ L + Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + +++ P + DL SL D + + +Q L W Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSTLLPKSLQPLAVEWQ 591 Score = 91.2 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 51/328 (15%), Positives = 115/328 (35%), Gaps = 40/328 (12%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51 + F+ + +LS+ + +Y + + A + + G I + Sbjct: 19 ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 +++E + D++ T L+++ P + I +AI + Sbjct: 79 FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203 + K+ PF +++ A + + + +V V+ +R I + Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEEF 258 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK---IKDWNPPKNYWF 260 L + A +KKVGL+D + +++V Q+L I + Sbjct: 259 VAQLKEVNGDLAALSKKVGLVDELATRQQVRQTLAETFGSDGKDSYNAIGYYEYKTTIKP 318 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288 L + + +++ + +M ++ +G Sbjct: 319 TTLTDANDIAIVVASGAIMDGSQPRGTV 346 >gi|157803726|ref|YP_001492275.1| cytidylate kinase [Rickettsia canadensis str. McKiel] gi|157784989|gb|ABV73490.1| cytidylate kinase [Rickettsia canadensis str. McKiel] Length = 305 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 139/263 (52%), Gaps = 4/263 (1%) Query: 30 HVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 + N ++A I I I + ++ +++++I D ALIV+++SPGG+ E I+ Sbjct: 47 PITGNEDYIASILIDEIIFEDEKRDKKLKKIIDDSHIKALIVNVNSPGGTVVGSEKIYNI 106 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 ++K+ +KPV+ + MA S GYLIS + I++ ++ GSIGV+ Q + KLG Sbjct: 107 LRKISEKKPVVIVMGTMATSGGYLISLGGDYIISHNGTITGSIGVILQTAEITELAQKLG 166 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + + KS +KA P+P ++ + + ++ +Y +F+ LVSE RN+P ++ L+D Sbjct: 167 IKFNNFKSGELKAAPNPTEKLTQAVRIAIMENIEDTYDFFLELVSERRNLPIEEVKKLAD 226 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 GR+++G +A K+ L+D +G ++ + L + + +KD+ ++ Sbjct: 227 GRVYSGRQALKLKLVDSIGSEDTALKWLQEVKKINTNLLVKDYPLKAKPKLVEMIFEDFG 286 Query: 270 SLLEDTIPLMKQTKVQGLWAVWN 292 S+ P + + G+ A++ Sbjct: 287 SIT----PNFFKNNLNGIKAIFQ 305 >gi|261209833|ref|ZP_05924135.1| protease IV [Vibrio sp. RC341] gi|260841131|gb|EEX67651.1| protease IV [Vibrio sp. RC341] Length = 616 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 70/287 (24%), Positives = 126/287 (43%), Gaps = 14/287 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 V+ S S N+ +A + G I D + + D + A Sbjct: 307 VSYYEYKASISPTTLPNASDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I I+ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + L+ LG+ V ++P + + + A +Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGVTTGLTQGAKDAIQLGIEHGYQ 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F+ LV+E R + ++ GR+WT +A+ +GL+D +G ++ L + Sbjct: 486 RFISLVAEKRGMTLKAVDDIAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAATLAQLDQYN 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + +++ P + DL + L + + +Q L W Sbjct: 546 LYWVEEPLTPAQQFLQDLLG-QVHVSLGLDVSTLLPKSLQPLAVEWQ 591 Score = 95.8 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 51/328 (15%), Positives = 115/328 (35%), Gaps = 40/328 (12%) Query: 1 MEFVLKKIKTRYVMLSL-VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + F+ + +LS+ + + + + N + + G I + Sbjct: 19 ITFIRLALTNLIFLLSIGIIYFIYIHADAPLPTINKSSALVLNLSGPIVEQSTHINPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 +++E + D++ T L+++ P + I +AI + Sbjct: 79 FAGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203 + K+ PF +++ A + + + +V V+ +R I + Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEEF 258 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK---IKDWNPPKNYWF 260 L + A +KKVGL+D + +++V Q+L + + + Sbjct: 259 VAQLKEVNGDLAALSKKVGLVDELATRQQVRQTLAETFGSDGKDSYNAVSYYEYKASISP 318 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288 L N S +++ + +M ++ +G Sbjct: 319 TTLPNASDIAVVVASGAIMDGSQPRGTV 346 >gi|261253430|ref|ZP_05946003.1| protease IV [Vibrio orientalis CIP 102891] gi|260936821|gb|EEX92810.1| protease IV [Vibrio orientalis CIP 102891] Length = 617 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 76/280 (27%), Positives = 131/280 (46%), Gaps = 13/280 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 + S + + +A + G I D + + DD A Sbjct: 308 IGFYEYQASVAPTFDLAQDDIAVVVASGAIMDGSQPPGTVGGDTTAALLRQARNDDKVKA 367 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I I+ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 368 VVLRVDSPGGSAFASEVIRNEIEALKEAGKPVVASMSSLAASGGYWISMSADRIVAQPTT 427 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + L+ LG+ V +SP ++ + ++ A Q Q ++ Y+ Sbjct: 428 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTSPF-SDVGVTTGLSDGASQAFQMGIEHGYN 486 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F+ LVS+SR+IP + ++ GR+WTG +A + GLID +G ++ + L + + Sbjct: 487 RFIGLVSQSRDIPLENVDDVAQGRVWTGQDALEFGLIDKIGDFDDAVKLAAELAKVEQYN 546 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 I +++ P + D N +L D L+ Q Sbjct: 547 IYWVEEPLSPAQQFIQDFMNQVKVNLGIDATALLPQALQP 586 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 94/285 (32%), Gaps = 38/285 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVE-DNSPHVARIAIRGQIEDSQ-------- 51 + F+ + + S+ + +Y + + + I G I + Sbjct: 19 ITFIRLALINLIFLASIGAIYFLYTTADTPTPVAPKESALIVNISGPIVEQSTYANPMDS 78 Query: 52 ------------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQK 92 ++++ I D + + L+++L P + I +A+ + Sbjct: 79 LTGSLLFGKELPKENVLFDIVDTIRHAKDDQNVSGLVLALRDLPETNLTKLRYIAKALNE 138 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 K I V +M + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 139 FKASGKPIYAVGDMYNQSQYYLASYADKIYLAPDGAVMLKGYSAYSLYYKTLLEKLDVNT 198 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-------- 202 + K+ PF ++ A + + + ++ V+ +R + Sbjct: 199 HVFRVGTYKSAIEPFIRDGMSDPAKESASRWLGQLWGAYIDDVASNRQLEPKLLTPDMDT 258 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 +L A + GL+D + +++V + L + Sbjct: 259 FLELLKKNNGDLAALSLNEGLVDQLATRQQVRKELIEVFGSNGDD 303 >gi|26988637|ref|NP_744062.1| signal peptide peptidase SppA, 36K type [Pseudomonas putida KT2440] gi|24983418|gb|AAN67526.1|AE016381_3 peptidase, putative [Pseudomonas putida KT2440] Length = 329 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 67/276 (24%), Positives = 128/276 (46%), Gaps = 16/276 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIE 58 + K+ T + ++ L ++ H A + +RG I D + +++ + Sbjct: 43 IFFKLLTFVYLFGILALFSPLMDMDKAASRSASHTALVEVRGVIADQEAASADNIVKSLR 102 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT---EVHEMAASAGYLIS 115 +DD A+++ ++SPGGS ++ I++++ P I + ++ AS Y I+ Sbjct: 103 EAFKDDKTKAVVMRINSPGGSPVQAGYVYDEIRRLRAEYPAIKLYAVIADLGASGAYYIA 162 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I A + SLVGSIGV ++KLGV ++ S KA PFS P+ Sbjct: 163 SAADEIYADKASLVGSIGVTAAGYGFVGTMEKLGVERRAYTSGEHKAFLDPFSPEKPEET 222 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 + Q V+D+++ F+ +V + R L G IW+G +AK +GL+D +G V Sbjct: 223 RFWQGVLDTTHRQFIAMVKQGRGERLKDKEHPELFSGLIWSGEQAKALGLVDGLGSASYV 282 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 + + +++ D+ ++ + K + S Sbjct: 283 AREIVG------EKELVDFTVQESPFDRFSKRVGAS 312 >gi|298372905|ref|ZP_06982895.1| signal peptide peptidase SppA, 67K type [Bacteroidetes oral taxon 274 str. F0058] gi|298275809|gb|EFI17360.1| signal peptide peptidase SppA, 67K type [Bacteroidetes oral taxon 274 str. F0058] Length = 582 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 76/277 (27%), Positives = 142/277 (51%), Gaps = 11/277 (3%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-------- 52 M+ ++K + + +L + S H + +A + G+I+ S E Sbjct: 269 MDSIIKALTVKD--YHTASLDDIKNVSSKHKSRSKNKIAVLYAVGEIDGSDERSGINSQK 326 Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 +++ + ++ DD A+++ ++SPGGSA+ E I++A+ KVK RKPV+ + + AAS GY Sbjct: 327 IVDELIDLADDDKIKAVVLRVNSPGGSAFGSEQIWQAVGKVKARKPVVVSMGDYAASGGY 386 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 ISC ++ I A T+L GSIG+ +P VK DK+G+S +SVK++ + + + Sbjct: 387 YISCIADRIFAEPTTLTGSIGIFGMFPNVKGLFDKIGLSFESVKTNKFSDFGATYRPMAA 446 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 + ++Q ++ Y F + ++ R + D +++GRI++G++A ++GL+D +GG E Sbjct: 447 EEKVLLQKYIEKGYDLFTKRCADGRGMSQDSIKKIAEGRIYSGSDALQLGLVDELGGLNE 506 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 IK++ K + S S Sbjct: 507 AIAFAAKQAKV-DEYSIKNYPAVKTVMEQLTEMFSTS 542 Score = 93.5 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 49/326 (15%), Positives = 119/326 (36%), Gaps = 42/326 (12%) Query: 1 MEFVLKKIKT----------RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED- 49 M+ LK + +V+L + V S + + V + ++G + + Sbjct: 1 MKSFLKYVFATIVGLLIFSVLWVLLFFAMIGVAMSSSKNTAPISENTVFELELKGNLVER 60 Query: 50 ---------------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 +++E IE+ + +D + + + + S + + I+R Sbjct: 61 AEEDIWTSIAAEMNSSQRQIALDDIVESIEKAAGEDKIKGIYLKIGNLSASMASLQQIYR 120 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 + + K I + + Y ++ ++ + + G+ + K LDKL Sbjct: 121 CLGQFKKSGKFIVAYGDYYGNGTYYLASIADKVYLNPEGTLALSGLQASTMFYKNLLDKL 180 Query: 149 GVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 GV ++ K K+ PF++ ++ + ++S + V+++R D Sbjct: 181 GVDMQIFKVGTFKSAVEPFTQTSMSEANKLQLTAYINSLWKEITTSVAQNRATTVDNINA 240 Query: 207 LSDGRIWTGA--EAKKVGLIDVVGGQEEVWQSLYALGVDQ----SIRKIKDWNPPKNYWF 260 +D ++ G E K LID + Q ++ + AL V S+ IK+ + Sbjct: 241 FADSGLFFGEAMETVKYKLIDSLVYQSDMDSIIKALTVKDYHTASLDDIKNVSSKHKS-- 298 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQG 286 +++ + + +++ + Sbjct: 299 RSKNKIAVLYAVGEIDGSDERSGINS 324 >gi|294494857|ref|YP_003541350.1| signal peptide peptidase A [Methanohalophilus mahii DSM 5219] gi|292665856|gb|ADE35705.1| signal peptide peptidase A [Methanohalophilus mahii DSM 5219] Length = 372 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 69/294 (23%), Positives = 141/294 (47%), Gaps = 12/294 (4%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-----------EDSQELIER 56 + +++ + ++Y++ ++ VA I I+G + S+++ Sbjct: 79 LIAVLLLVIGSSFAIIYYAAGGDFYPDNDRVAVIYIQGTMLTGSVPSGLGYATSEDISSS 138 Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLIS 115 I + DDS A+++ ++S GGS A E I I+K + PV+T + ++AASA Y +S Sbjct: 139 IRKAVDDDSVKAIVLRVNSGGGSGSASEEINTEIRKAQQAGVPVVTSMGDVAASAAYHVS 198 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 ++++IVA ++ GSIGV++ + + + ++ G+ KS K + ++ + Sbjct: 199 SSTDLIVANRNTMTGSIGVIWTFRNMSAYYEEEGIDFHVAKSGEFKDMGGTWRGLSDEEK 258 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 + V+ SY+ FV+ V++ RN+ + ++DGRI+TG AK++GLID G + Sbjct: 259 EYADRVIMESYNLFVQDVAQGRNMTVSEVKDIADGRIYTGVSAKRIGLIDEYGNFYDAID 318 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 +G + I N P + +++E+ + +++ L Sbjct: 319 RAAGMGGIEGEPSIYYVNKPSITNLLFGSEVQNDNMVENFVNYYEKSPFGKLAY 372 >gi|148549012|ref|YP_001269114.1| signal peptide peptidase SppA, 36K type [Pseudomonas putida F1] gi|148513070|gb|ABQ79930.1| signal peptide peptidase SppA, 36K type [Pseudomonas putida F1] Length = 329 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 67/276 (24%), Positives = 128/276 (46%), Gaps = 16/276 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIE 58 + K+ T + ++ L ++ H A + +RG I D + +++ + Sbjct: 43 IFFKLLTFVYLFGILALFSPLMDMDKAASRSASHTALVEVRGVIADQEAASADNIVKSLR 102 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT---EVHEMAASAGYLIS 115 +DD A+++ ++SPGGS ++ I++++ P I + ++ AS Y I+ Sbjct: 103 EAFKDDKTKAVVMRINSPGGSPVQAGYVYDEIRRLRAEYPAIKLYAVIADLGASGAYYIA 162 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I A + SLVGSIGV ++KLGV ++ S KA PFS P+ Sbjct: 163 SAADEIYADKASLVGSIGVTAAGYGFVGAMEKLGVERRAYTSGEHKAFLDPFSPEKPEET 222 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 + Q V+D+++ F+ +V + R L G IW+G +AK +GL+D +G V Sbjct: 223 RFWQGVLDTTHQQFIAMVKQGRGERLKDKEHPELFSGLIWSGEQAKALGLVDGLGSASYV 282 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 + + +++ D+ ++ + K + S Sbjct: 283 AREIVG------EKELVDFTVQESPFDRFSKRVGAS 312 >gi|238797349|ref|ZP_04640849.1| Protease 4 [Yersinia mollaretii ATCC 43969] gi|238718780|gb|EEQ10596.1| Protease 4 [Yersinia mollaretii ATCC 43969] Length = 598 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 68/272 (25%), Positives = 124/272 (45%), Gaps = 14/272 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 + +A I G I D L +I + D A+I+ ++SPGGS Sbjct: 299 TPTPQQGEQIAVIFANGAIMDGPQTPGNVGGDTLAAQIRQARLDPKIKAVILRVNSPGGS 358 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + ++ +KP++ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 359 VSASELIRSELSALRAAKKPLVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 418 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L+ +GV V +SP+ + + MQ +++ Y FV LV+ SR+ Sbjct: 419 NTFQNSLESIGVHTDGVATSPLADISITKDLPSEFSQM-MQINIENGYKTFVDLVATSRH 477 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +W G +AK GL+D +G ++ + + L ++ + + P Sbjct: 478 KTPEQVDQIAQGHVWIGFDAKNNGLVDQLGDFDDAVKKVAELAQLKTWQLNWFIDEPS-- 535 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 DL +S+ ++ +P Q + ++ Sbjct: 536 -LSDLIFGQMSASVQAMLPAAIQAWLPAPISI 566 Score = 85.8 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 45/315 (14%), Positives = 108/315 (34%), Gaps = 44/315 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 M FV + I +++L ++ VY + + + + + G + D Sbjct: 1 MNFVREFILNLFLILLILVGVGVYLQFQTKPVEPVKGALLVNLSGVVVDQPAVNNKLRQW 60 Query: 52 ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92 +++E I D++ +++SLS G+ + I +A+++ Sbjct: 61 GRELLGASSNRLQENSLFDVVETIRLAKTDNNINGMVLSLSDFTGADQPSLQYIGKALRE 120 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 ++ I + + Y ++ +N I + V G Y K L+KL V+ Sbjct: 121 FRDSGKPIYAIGDSYNQNQYYLASFANKIYLSPQGAVDLHGFASNNLYYKSLLEKLKVTT 180 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203 + K+ P +++P A + + + ++ V+ +R + ++ Sbjct: 181 NIFRVGTFKSAVEPMIRDDMSPAAREADSRWIGGLWQNYLTAVAANRQLTPEQLFPGAAG 240 Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPK 256 L T A L+D + + ++ L + + I D+ P Sbjct: 241 VISGLQTAGGSTAKYALDNKLVDQLASRPDMESELIKTFGWDKKSNNFNYISIYDYQPTP 300 Query: 257 NYWFCDLKNLSISSL 271 + + ++ Sbjct: 301 TPQQGEQIAVIFANG 315 >gi|325913830|ref|ZP_08176189.1| signal peptide peptidase SppA, 67K type [Xanthomonas vesicatoria ATCC 35937] gi|325539905|gb|EGD11542.1| signal peptide peptidase SppA, 67K type [Xanthomonas vesicatoria ATCC 35937] Length = 633 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 64/256 (25%), Positives = 120/256 (46%), Gaps = 11/256 (4%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 D+ P VA + G+I + + + DD A+++ + SPGG +A Sbjct: 331 DSRPQVAVVVAAGEISGGEQPAGRIGGESTAALLRQARDDDEVKAVVLRVDSPGGEVFAS 390 Query: 84 EAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I R + + + KPV+ + ++AAS GY IS ++ I A +++ GSIG+ P + Sbjct: 391 EQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGSIGIFGMVPNLT 450 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LDK+GV V ++ ++P A Q++Q V++ Y F V+++R+ + Sbjct: 451 RALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTGKVAQARHQSVE 510 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR-KIKDWNPPKNYWFC 261 ++ GR+W+GA+AK+ GL+D GG +E + +++ P + Sbjct: 511 AIDKVARGRVWSGAQAKQHGLVDAFGGMQEAVADAANRAKLSKGKFRVRYVEKPATPFSQ 570 Query: 262 DLKNLSISSLLEDTIP 277 + + S + + Sbjct: 571 FMSGFAGSRMGAWMLS 586 Score = 69.6 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 47/288 (16%), Positives = 101/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRGQIEDS------ 50 M F + I L+ L ++ + + P I G + + Sbjct: 21 MNFTRRLIFNLVFFGFLLLLLLLVVVAMARGDGTKPLAERTTLVINPEGTLVEQFSADPV 80 Query: 51 ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQ 91 ++L+ IE +D ++++L S +A + + A+Q Sbjct: 81 SRSLAKAVGDKSAEEVQLRDLVRVIEAAGKDRKIERVLLNLDKLQPSGFASQREVAAALQ 140 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGV 150 K++ I E + YL++ +N + V G+ ++ + + DKLGV Sbjct: 141 KLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGV 200 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK----T 204 + + K+ P+ + A + ++ + ++ V +R + + Sbjct: 201 DVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWQRYLGDVGTARKLTPAQLTAGI 260 Query: 205 LVLSDGRIWTGAE----AKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L +G + G + A + L+D + +E+V L GV S Sbjct: 261 DTLPEGVVAAGGDLAKFALQQKLVDGLKTREDVDALLTKRGVADSDAD 308 >gi|325925728|ref|ZP_08187103.1| signal peptide peptidase SppA, 67K type [Xanthomonas perforans 91-118] gi|325543856|gb|EGD15264.1| signal peptide peptidase SppA, 67K type [Xanthomonas perforans 91-118] Length = 642 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 65/268 (24%), Positives = 122/268 (45%), Gaps = 13/268 (4%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 D+ P VA + G+I + + + D+ A+++ + SPGG +A Sbjct: 340 DSRPQVAVVVAAGEISGGEQPAGRIGGESTAALLRQARDDEEVKAVVLRVDSPGGEVFAS 399 Query: 84 EAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I R + + + KPV+ + ++AAS GY IS ++ I A +++ GSIG+ P + Sbjct: 400 EQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGSIGIFGMVPNLT 459 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LDK+GV V ++ ++P A Q++Q V++ Y F V+++R+ + Sbjct: 460 RALDKIGVHTDGVATTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTGKVAQARHQSVE 519 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261 ++ GR+W+GA+AK+ GL+D GG E + +++ P + Sbjct: 520 AIDKVARGRVWSGAQAKERGLVDAFGGMSEAVADAADRAKLSRGKFRVRYVEKPATPFSQ 579 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + S + + + L A Sbjct: 580 FMSGFAGSRMGAWMLG--DSGMARALLA 605 Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 97/288 (33%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRGQIEDS------ 50 M F + I L L +V+ + + P I G + + Sbjct: 30 MNFTRRLIFNLVFFGFLFLLLLVFVVALARGDGTKPLAERTTLVINPEGTLVEQFSADPV 89 Query: 51 ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQ 91 ++L+ IE +D ++++L S +A + + A+Q Sbjct: 90 SRSLAKAVGDKSAEEVQLRDLVRVIEAAGKDRKIERVLLNLDKLQPSGFASQREVAVALQ 149 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGV 150 K++ I E + YL++ +N + V G+ ++ + + DKLGV Sbjct: 150 KLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGV 209 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-- 206 + + K+ P+ + A + ++ + ++ V +R + + Sbjct: 210 DVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWQRYLADVGTARKLSPAQLAAGI 269 Query: 207 ------LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 ++ A + L+D + +EEV L GV S Sbjct: 270 DTLPEGVAAAGGDLAKFALQQKLVDGLKTREEVDALLVKRGVADSDAD 317 >gi|183599305|ref|ZP_02960798.1| hypothetical protein PROSTU_02769 [Providencia stuartii ATCC 25827] gi|188021539|gb|EDU59579.1| hypothetical protein PROSTU_02769 [Providencia stuartii ATCC 25827] Length = 622 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 73/277 (26%), Positives = 136/277 (49%), Gaps = 14/277 (5%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSL 73 + + S + ++A I ++G I D + + +I +++ A+I+ + Sbjct: 320 LTSTTGSETSATAGNIAVIIVQGAIMDGPQSPGIASGDLISSQIREARLNENIKAIILRV 379 Query: 74 SSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 +SPGGS A + I + + KPV+ + MAAS GY +S +N IVA+ ++ GSI Sbjct: 380 NSPGGSVTASDLIRNELASARAAGKPVVVSMGGMAASGGYWVSTPANYIVASPNTITGSI 439 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 G+ + LD +GV V ++P+ + ++P+ MMQ +++ Y F+ L Sbjct: 440 GIFGVINTFENALDSVGVYTDGVSTTPLADISAT-KGISPEFSDMMQITIENGYKTFIGL 498 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 V++SRN ++ ++ GR+W G++AKK+GL+D +G ++ L + DW Sbjct: 499 VAKSRNKTPEEIDKIAQGRVWIGSDAKKIGLVDQLGDFDDAVTKAAELAKLNDVS--LDW 556 Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 P+ + L L +SS + +P + Q + A Sbjct: 557 MQPELSFMDQLI-LELSSTAQAVMPDILQVFLPEAVA 592 Score = 79.7 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 43/332 (12%), Positives = 113/332 (34%), Gaps = 43/332 (12%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH--VARIAIRGQIEDSQ------- 51 + F+ + + ++ + + S + + + + ++G + D Sbjct: 19 LNFIRELVFNTIFLILCFLVIGSIALYQSDSKPDQNYFGALYVDLQGIVVDQVSTPDPFG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 ++++ I + DD T +++ L + + I +AI Sbjct: 79 RMSRELLGTPNNRMQENSLFDIVDTIRSAATDDRITGMVLRLDNLVSADQPSLNFIGKAI 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 + K I V + + + Y ++ ++ I + +VG G Y K L+KL V Sbjct: 139 TEFKESGKPIYAVGDSFSQSQYYLASYADHIFLSPQGMVGIQGFSTNTLYYKSLLEKLKV 198 Query: 151 SIKSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ P ++P+A Q + +D+ ++ ++ ++++R Sbjct: 199 SSHIFRVGTYKSAVEPLMRDNMSPEARQATKQWLDALWNNYLDTLAKNRQTTAKGIFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY-- 258 L A L+D + +E+ L K ++ +Y Sbjct: 259 DVLLSKLRASGGDNAKYALNQKLVDKIYTREQAENVLKNQFGWNKQEKHFNYISIYDYSG 318 Query: 259 -WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + ++ + +++ + G + Sbjct: 319 KLTSTTGSETSATAGNIAVIIVQGAIMDGPQS 350 >gi|21233189|ref|NP_639106.1| protease IV [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770130|ref|YP_244892.1| protease IV [Xanthomonas campestris pv. campestris str. 8004] gi|188993338|ref|YP_001905348.1| protease IV [Xanthomonas campestris pv. campestris str. B100] gi|21115040|gb|AAM43018.1| protease IV [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575462|gb|AAY50872.1| protease IV [Xanthomonas campestris pv. campestris str. 8004] gi|167735098|emb|CAP53310.1| protease IV [Xanthomonas campestris pv. campestris] Length = 633 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 67/267 (25%), Positives = 120/267 (44%), Gaps = 11/267 (4%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 D+ P VA + G+I + + + D+ A+++ + SPGG +A Sbjct: 331 DSRPQVAVVVAAGEISGGEQPAGRIGGESTAALLRQARDDEEIKAVVLRVDSPGGEVFAS 390 Query: 84 EAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I R + + + KPV+ + ++AAS GY IS ++ I A +++ GSIG+ P + Sbjct: 391 EQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGSIGIFGMVPNLT 450 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LDK+GV V ++ ++P A Q++Q V++ Y F V+++R+ + Sbjct: 451 RALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTGKVAQARHQSVE 510 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 ++ GR+W+GA+AK GL+D GG +E + + + F Sbjct: 511 AIDKVARGRVWSGAQAKDHGLVDAFGGMQEAVADAASRAKLSKGKFRVRYVEKAATPFSQ 570 Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWA 289 + S L + L + L A Sbjct: 571 FMSGFAGSRLGAWM-LSDSGMARALLA 596 Score = 69.3 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 47/288 (16%), Positives = 103/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA----RIAIRGQIEDS------ 50 M F + I L L +++ + + P A IA G + + Sbjct: 21 MNFTRRLIFNLVFFGFLFLLLLLFVVAIARGDGTKPLAARTTLVIAPEGTLVEQFSADPV 80 Query: 51 ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQ 91 ++L+ IE +D ++++L S +A + + +A+Q Sbjct: 81 SRSLAKAVGDKSAEEVQLRDLVRVIEAAGKDSKIERVLLNLDKLQPSGFASQREVAKALQ 140 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGV 150 ++ I E + YL++ +N + V G+ ++ + + DKLGV Sbjct: 141 GLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGV 200 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK----T 204 + + K+ P+ + A + ++ + ++ V+ +R + + Sbjct: 201 DVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWQRYLADVATARKLSPAQLAAGI 260 Query: 205 LVLSDGRIWTGAE----AKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L +G G + A + L+D + +E+V L GV + Sbjct: 261 DTLPEGVTAAGGDLAKFALQQKLVDGLKTREQVDSLLTERGVADNDAD 308 >gi|89100078|ref|ZP_01172947.1| signal peptide peptidase [Bacillus sp. NRRL B-14911] gi|89085168|gb|EAR64300.1| signal peptide peptidase [Bacillus sp. NRRL B-14911] Length = 358 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 77/271 (28%), Positives = 137/271 (50%), Gaps = 19/271 (7%) Query: 30 HVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSS 75 +S +A + + G I+D+ + +++++ + DDS A+I+ ++S Sbjct: 76 EPGSSSKKIAVLNVDGTIQDAGDASSLFASPGYNHKSFMKKLDHVKEDDSVKAVILRVNS 135 Query: 76 PGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 PGG I I +++ +KPV + MAAS GY IS + I A+ +L GS+G Sbjct: 136 PGGGVVESSEIHDKIVEIQKEAKKPVYISMGSMAASGGYYISAPAEKIYASPETLTGSLG 195 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V+ Q +K GV ++KS P K SP E+ + +++Q ++D+SY FV+++ Sbjct: 196 VIMQGYNYAGLAEKYGVEFVTIKSGPYKDIMSPSREMTEEEREILQSMIDNSYEGFVKVI 255 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 SE R IP D+ ++DGRI+ G +AK++ LID G E+V L + + + + Sbjct: 256 SEGRGIPADQVRKIADGRIYDGRQAKELNLIDGFGFFEDVVDELEKDHKLKGAQVV---S 312 Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 +N F L ++ ++ D I + K+ Sbjct: 313 YSENMGFGSLFSMGARKVMGDDIEMAGMMKL 343 >gi|229528985|ref|ZP_04418375.1| protease IV [Vibrio cholerae 12129(1)] gi|229332759|gb|EEN98245.1| protease IV [Vibrio cholerae 12129(1)] Length = 616 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 126/287 (43%), Gaps = 14/287 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 + + + ++ +A + G I D + + D + A Sbjct: 307 IGYYEYKTTIKTTTLTDANDIAIVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I I+ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + L+ LG+ V ++P + + + A +Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGLTTGLTQGAKDAIQLGIEHGYQ 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F+ LV+E R + L+ GR+WT +A+ +GL+D +G ++ L + Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + +++ P + DL SL D + + +Q L W Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSTLLPKSLQPLAVEWQ 591 Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 100/283 (35%), Gaps = 37/283 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51 + F+ + +LS+ + +Y + + A + + G I + Sbjct: 19 ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 +++E + D++ T L+++ P + I +AI + Sbjct: 79 FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 139 KASGKPVFAVGDFYNQSQYHLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203 + K+ PF +++ A + + + +V V+ +R I + Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEEF 258 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 L + A +KKVGL+D + +++V Q+L Sbjct: 259 VAQLKEVNGDLAALSKKVGLVDELATRQQVRQTLAETFGSDGK 301 >gi|284921686|emb|CBG34758.1| protease IV [Escherichia coli 042] Length = 618 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARSAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + +A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITKALPQEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 99.7 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QRLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|327484530|gb|AEA78937.1| Protease IV [Vibrio cholerae LMA3894-4] Length = 616 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 126/287 (43%), Gaps = 14/287 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 + + + ++ +A + G I D + + D + A Sbjct: 307 IGYYEYKTTIKTTTLTDANDIAIVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I I+ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + L+ LG+ V ++P + + + A +Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGLTTGLTQGAKDAIQLGIEHGYQ 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F+ LV+E R + L+ GR+WT +A+ +GL+D +G ++ L + Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + +++ P + DL SL D + + +Q L W Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSTLLPKSLQPLAVEWQ 591 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 100/283 (35%), Gaps = 37/283 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51 + F+ + +LS+ + +Y + + A + + G I + Sbjct: 19 ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 +++E + D++ T L+++ P + I +AI + Sbjct: 79 FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203 + K+ PF +++ A + + + +V V+ +R I + Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEEF 258 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 L + A +KKVGL+D + +++V Q+L Sbjct: 259 VAQLKEVNGDLAALSKKVGLVDELATRQQVRQTLAETFGSDGK 301 >gi|315282522|ref|ZP_07870914.1| putative signal peptide peptidase SppA [Listeria marthii FSL S4-120] gi|313613825|gb|EFR87577.1| putative signal peptide peptidase SppA [Listeria marthii FSL S4-120] Length = 337 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 73/280 (26%), Positives = 134/280 (47%), Gaps = 19/280 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76 E +A +++ G I+D+ + ++++E++ DD +++ ++SP Sbjct: 56 EEGGMDTIAVLSVDGTIQDTGDSGSLFGDTGYNHSLFMQQLEQVRNDDLIQGVLLYVNSP 115 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG I I ++K + P + MAAS GY IS ++ I A++ +L GS+GV Sbjct: 116 GGGVMESAQIRDKILQIKKERGIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + Q + KLGVS ++KS K S + ++MQ ++D SY+ FV++V+ Sbjct: 176 IMQSYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + R++P ++ ++DGRI+ G +AK+ GLID G QE+ ++L I+ P Sbjct: 236 KGRDMPVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALEALKKEPGLSDATVIEYSAP 295 Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291 + IS + + I L K + ++ Sbjct: 296 EDFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYLY 335 >gi|149376748|ref|ZP_01894506.1| putative peptidase [Marinobacter algicola DG893] gi|149358987|gb|EDM47453.1| putative peptidase [Marinobacter algicola DG893] Length = 346 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 63/274 (22%), Positives = 122/274 (44%), Gaps = 14/274 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 + K+ T + +L+ + S + H A + I G I + ++ + Sbjct: 62 IFFKLLTFGYLFALLLMIQFPLSGALESAAKGKHTALVEIEGTIAADELASADNIVGSLR 121 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLIS 115 +++ +I+ ++SPGGS ++ I ++ K V + ++ AS Y I+ Sbjct: 122 EAFEAENSVGVILRINSPGGSPVQSGYVYDEIVRLRGEYPEKKVYAVISDIGASGAYYIA 181 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I A + SLVGSIGV+ +DKLGV + + KA PFS + V Sbjct: 182 AAADEIYADKASLVGSIGVVAGGFGFTGIMDKLGVDRRLYTAGENKAFLDPFSPEEEEEV 241 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 + QDV+++++ F+ V + R L G +W+G +A ++GLID +G V + Sbjct: 242 KFWQDVLETTHSQFIESVRKGRGDRLADDEQLFSGLVWSGEQALELGLIDGLGSSSHVAR 301 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 + + D++ ++ + + +S Sbjct: 302 QVIGQ------EDLVDYSRRESPFQNIVDQFGVS 329 >gi|238788465|ref|ZP_04632258.1| Protease 4 [Yersinia frederiksenii ATCC 33641] gi|238723378|gb|EEQ15025.1| Protease 4 [Yersinia frederiksenii ATCC 33641] Length = 624 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 69/273 (25%), Positives = 123/273 (45%), Gaps = 18/273 (6%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 + +A + G I D L +I + D A+I+ ++SPGGS Sbjct: 325 TPAPQQGEQIAVLFANGAIMDGPQTPGNVGGDALAAQIRQARLDPKIKAVILRVNSPGGS 384 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + ++ KP++ + MAAS GY IS +N I+A ++L GSIG+ Sbjct: 385 VSASELIRSELAALRAANKPLVVSMGGMAASGGYWISTPANYIIANPSTLTGSIGIFGVI 444 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L+ +GV V +SP+ S ++ P+ QMMQ +++ Y F+ LV+ SR+ Sbjct: 445 NTFQNSLESIGVHTDGVATSPLANV-SMTKDLPPEFSQMMQINIENGYKTFIDLVATSRH 503 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256 ++ ++ G +W G +AK GL+D +G ++ + L + + D Sbjct: 504 KTPEQVDQIAQGHVWIGMDAKNNGLVDQLGDFDDAVNKVAELAKLKTWQLNWFVD----- 558 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 DL +S+ ++ +P Q + + Sbjct: 559 EPSLSDLIFGQMSASVQAILPAAIQAWLPAPIS 591 Score = 82.0 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 48/315 (15%), Positives = 108/315 (34%), Gaps = 44/315 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + FV + I +++L ++ +Y + S + + + G + D Sbjct: 27 LNFVREFILNLFLILLILVGVGIYLQFQSKPAEPVKGALLVNLSGVVVDQPAVNNKLRQL 86 Query: 52 ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92 +++E I D++ T L++SLS G+ + I +A+++ Sbjct: 87 GRELLGSSSNRLQENSLFDIVETIRLAKTDNNITGLVLSLSDFTGADQPSLQYIGKALRE 146 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 ++ I + + Y ++ +N I + V G Y K L+KL V+ Sbjct: 147 FRDTGKPIYAIGDSYNQTQYYLASFANKIYLSPQGAVDLHGFASNNLYYKSLLEKLKVTT 206 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203 + K+ P +++P A + + + ++ VS +R + ++ Sbjct: 207 NIFRVGTYKSAVEPMIRDDMSPAAREADSRWIGGLWQNYLTAVSANRQLTPEQLFPGAAG 266 Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPK 256 L A L+D + + E+ L D + I D+ P Sbjct: 267 VISGLQAADGSPAQYALTSKLVDQLASRPEMETELVKTFGWDKKNNDFNYVSIYDYQPTP 326 Query: 257 NYWFCDLKNLSISSL 271 + + ++ Sbjct: 327 APQQGEQIAVLFANG 341 >gi|325275823|ref|ZP_08141688.1| signal peptide peptidase SppA, 36K type [Pseudomonas sp. TJI-51] gi|324099042|gb|EGB97023.1| signal peptide peptidase SppA, 36K type [Pseudomonas sp. TJI-51] Length = 329 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 65/276 (23%), Positives = 127/276 (46%), Gaps = 16/276 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIE 58 + K+ T + ++ L + H A + +RG I D + +++ + Sbjct: 43 IFFKLLTFVYLFGILALFSPLMDMDKAASRGASHTALVEVRGVIADQEAASADNIVKSLR 102 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT---EVHEMAASAGYLIS 115 +D A+++ ++SPGGS ++ I++++ P I + ++ AS Y I+ Sbjct: 103 EAFKDSKTKAVVMRINSPGGSPVQAGYVYDEIRRLRAEYPAIKLYAVIADLGASGAYYIA 162 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I A + SLVGSIGV ++KLGV ++ S KA PFS P+ Sbjct: 163 SAADEIYADKASLVGSIGVTAAGYGFVGTMEKLGVERRAYTSGEHKAFLDPFSPEKPEET 222 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 + Q V+D++++ F+ +V + R L G +W+G +AK +GL+D +G V Sbjct: 223 RFWQGVLDTTHNQFIAMVKQGRGERLKDKEHPELFSGLVWSGEQAKALGLVDGLGSASYV 282 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 + + +++ D+ ++ + K + S Sbjct: 283 AREIVG------EKELVDFTVQESPFDRFSKRVGAS 312 >gi|330502590|ref|YP_004379459.1| signal peptide peptidase SppA, 36K type [Pseudomonas mendocina NK-01] gi|328916876|gb|AEB57707.1| signal peptide peptidase SppA, 36K type [Pseudomonas mendocina NK-01] Length = 325 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 69/297 (23%), Positives = 128/297 (43%), Gaps = 23/297 (7%) Query: 6 KKIKTRYVMLSLVTLT-----VVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIE 55 ++ + +L+ + L V+ + H A I IRG I D + +++ Sbjct: 36 RRWGIFFKLLTFIYLFGALALVLPALDLKSASTTTAHTALIEIRGMIADREEASADKVVG 95 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGY 112 + D + +I+ ++SPGGS I+ I+++ + V + ++ AS Y Sbjct: 96 SLRAAFEDTNTKGVILRINSPGGSPVQSGYIYDEIRRLRGEYPQTKVYAVISDLGASGAY 155 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 I+ A++ I A + SLVGSIGV ++KLGV + S KA PF Sbjct: 156 YIASAADEIYADKASLVGSIGVTAASFGFVETMEKLGVERRVYTSGEHKAFLDPFQPQKE 215 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPY--DKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + + V+D+++ F+ V + R D+ L G +W+G +A ++GL+D +G Sbjct: 216 EETRFWKTVLDTTHRQFIDSVKKGRGDRLKADEHPELFSGLVWSGEQALQLGLVDALGSA 275 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 V + + +++ D+ + K L S + D I L + L Sbjct: 276 SYVAREVIG------EKEMVDFTQRDTPFDRFAKRLGTS--VADRIALWMGFQGPTL 324 >gi|324113514|gb|EGC07489.1| signal peptide peptidase SppA [Escherichia fergusonii B253] Length = 618 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 15/283 (5%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATAL 69 ++ ++ + V+ + + G I D +E +I D A+ Sbjct: 310 AISFYDYALKTPVKTPE-MIGVVFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAI 368 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 ++ ++SPGGS A E I + K KPV+ + MAAS GY IS +N I+A ++L Sbjct: 369 VLRVNSPGGSVTASEVIRSELAAAKAAGKPVVVSMGGMAASGGYWISTPANYIIANPSTL 428 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIG+ V+ LD +GV V +SP+ S MQ +++ Y Sbjct: 429 TGSIGIFGVINTVENSLDSIGVHTDGVSTSPLANMSVTQSLPTEVQQM-MQLSIENGYKR 487 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 F+ LV+++R ++ ++ G +WTG +AK GL+D +G ++ L Sbjct: 488 FITLVADARKSTPEQVDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWS 546 Query: 249 IKDWNPPKNYWFC--DLKNLSISSLLEDTIPLMKQTKVQGLWA 289 I + ++ D + S+ ++L I M + + Sbjct: 547 INYYQDEPTFFDMVVDSMSGSVRAMLPQAIQAMLPAPLATAVS 589 Score = 97.0 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 49/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKTR-YVMLSLVTLTVVYFSWSSHVEDNSPHVARI-AIRGQIEDSQ------- 51 + FV + + ++ L L+ + + S+ D++ A + I G I D Sbjct: 19 LNFVREMVLNLLFIFLVLIGVGIWMQVSSNGSSDSASRGALLLDISGVIVDKPSNNHRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G+ + I +A+ Sbjct: 79 VIGRQLFGASSERLQENSLFDIVNTIRQAKDDSNITGIVLDLENFAGADQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + + E Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPVIAIGESYTQGQYYLASFANKIWLSPQGTVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + V + ++ ++ +R I + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWVGELWQNYLNTIAANRQISAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A L+D +G +V ++L K Sbjct: 259 QAMIADLTKLGGDTAQYALDHKLVDALGSSADVEKALTKQFGWSKADK 306 >gi|146306653|ref|YP_001187118.1| signal peptide peptidase SppA, 36K type [Pseudomonas mendocina ymp] gi|145574854|gb|ABP84386.1| signal peptide peptidase SppA, 36K type [Pseudomonas mendocina ymp] Length = 326 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 68/297 (22%), Positives = 123/297 (41%), Gaps = 23/297 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSS-----HVEDNSPHVARIAIRGQIEDSQE-----LIE 55 ++ + +L+ + L + H A I IRG I D ++ ++ Sbjct: 37 RRWGIFFKLLTFLYLFGALALFLPALDLKKGASTGAHTALIEIRGMIADQEQASADKVVG 96 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGY 112 + D + +I+ ++SPGGS I+ I++++ P I + AS Y Sbjct: 97 SLRAAFEDANTKGVILRINSPGGSPVQSGYIYDEIRRLRGEHPQIKVYAVITDLGASGAY 156 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 I+ A++ I A + SLVGSIGV ++KLGV + S KA PF Sbjct: 157 YIASAADEIYADKASLVGSIGVTAASFGFVETMEKLGVERRVYTSGEHKAFLDPFQPQKE 216 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--LVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + + V+D+++ F+ V + R L G +W+G +A ++GL+D +G Sbjct: 217 EETRFWKGVLDTTHRQFIESVKQGRGDRLKADAHPELFSGLVWSGEQALQLGLVDALGSA 276 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 V + + +++ D+ + K L S + D I L + L Sbjct: 277 SYVAREVIG------EKEMVDFTVRDTPFDRFAKRLGTS--VADRIALWMGFQGPTL 325 >gi|29347289|ref|NP_810792.1| protease IV [Bacteroides thetaiotaomicron VPI-5482] gi|29339188|gb|AAO76986.1| protease IV [Bacteroides thetaiotaomicron VPI-5482] Length = 592 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 71/284 (25%), Positives = 132/284 (46%), Gaps = 13/284 (4%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRD 63 L ++ + + + VA G+I D ++I + ++ D Sbjct: 287 VLGLSDMINVKKNMPKDKSGNIVAVYYASGEITDYSGSSTSEEGIVGTKVIRDLRKLKDD 346 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 + A+++ ++SPGGSA+A E I+ A++++K KPVI + + AAS GY ISC ++ IVA Sbjct: 347 EDVKAVVLRVNSPGGSAFASEQIWHAVKELKTEKPVIVSMGDYAASGGYYISCVADTIVA 406 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 T+L GSIG+ P VK +K+G++ VK++ + N +MQ ++ Sbjct: 407 EPTTLTGSIGIFGMVPNVKELSEKIGLTYDVVKTNKFSDFGNIMRPFNQDEKTLMQMMIT 466 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 Y FV +E R++ + +++GR+WTG AK++GL+DV+GG + + Sbjct: 467 QGYDTFVNRCAEGRHMSKEAIEKIAEGRVWTGEAAKELGLVDVLGGIDTALEIAVRKAGI 526 Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + + ++ L + + + Q Sbjct: 527 EG-YTVVSYPAKQDLLSSLLNTKPTNYVESQILKSKLGEYYQQF 569 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 98/264 (37%), Gaps = 26/264 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49 ++ +VTL + + + V + + G + Sbjct: 22 LFIIGMVTLFGIVSTADTETIVKKNSVMMLDLNGVLVERTQESPLGILSQLFSDDSNTYG 81 Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 +++ I++ +++ + + S G S + + I A+ K I + Sbjct: 82 LDDILSSIKKAKENENIKGIYLQASMLGTSYASLQEIRNALLDFKESGKFIIAYGDSYTQ 141 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y +S ++ ++ ++ G+ + K L K+GV ++ K K+ PF Sbjct: 142 GLYYLSSVADKVLLNPKGMIEWKGIASAPLFYKDLLQKIGVEMQIFKVGTYKSAVEPFIS 201 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225 +E++P + + ++S + VS SR++P D L+D + E+ + GL D Sbjct: 202 TEMSPANREQVTAFINSIWGQVTEGVSASRSLPVDSLNALADRMLMFYPAEESVQCGLAD 261 Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249 + + +V L + ++ Sbjct: 262 TLIYRNDVRNYLKQWVDLKEDDRL 285 >gi|326564633|gb|EGE14851.1| signal peptide peptidase SppA [Moraxella catarrhalis 46P47B1] gi|326565450|gb|EGE15621.1| signal peptide peptidase SppA [Moraxella catarrhalis 12P80B1] gi|326575606|gb|EGE25530.1| signal peptide peptidase SppA [Moraxella catarrhalis O35E] Length = 342 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 60/247 (24%), Positives = 123/247 (49%), Gaps = 13/247 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVE---DNSPHVARIAIRGQIE-----DSQELIE 55 LK + +++ ++ L + S E N PH+A I + G I ++Q + + Sbjct: 52 FLKLLTFAFLVFFIIVLGFGCSGFGSSFERIGINEPHIAIIDVNGAIMTNGDVNAQNIND 111 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFR---AIQKVKNRKPVITEVHEMAASAGY 112 + ++ A A++++++SPGGS + I++ +++ K + + ++ AS Y Sbjct: 112 SLMEAFENNQAKAVVLNINSPGGSPVQSDEIWQMAMMLRQEYPDKKLYAIIGDLGASGAY 171 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 I+ A++ I +SLVGSIGV+ ++ + K+GV +++ + K S E+ Sbjct: 172 YIASAADEIWVNPSSLVGSIGVIMSGYNLEELMKKVGVKDRTITAGEYKDILSSSREMTE 231 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 Q +Q +++ ++ F++ V + R + L G IWTG +A ++GL D GG Sbjct: 232 TERQHIQALLNKTHQNFIKAVKQGRGSKLKNPEQNQLFSGLIWTGTDAVELGLADKTGGI 291 Query: 231 EEVWQSL 237 ++ ++L Sbjct: 292 SQLKKTL 298 >gi|319953646|ref|YP_004164913.1| signal peptide peptidase sppa, 67k type [Cellulophaga algicola DSM 14237] gi|319422306|gb|ADV49415.1| signal peptide peptidase SppA, 67K type [Cellulophaga algicola DSM 14237] Length = 586 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 62/254 (24%), Positives = 127/254 (50%), Gaps = 10/254 (3%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSP 76 + + + +A I +G+I + + + ++ DD+ A+++ ++SP Sbjct: 291 ANKTKLYKGDDKIAVIYAQGEILYGEGGPDVIGQGIINKSLKEAREDDAVKAIVLRVNSP 350 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GGSA + I+R I+ K KPV+ + ++AAS GY I+ ++ I A T++ GSIGV Sbjct: 351 GGSALTSDIIWREIELTKAIKPVVVSMGDVAASGGYYIAVGADKIFAEPTTITGSIGVFG 410 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 P +G++ + V ++ + S F ++ M+Q+ V+S+Y F+ V++ Sbjct: 411 TIPNATELAKNIGINAEQVGTNKNSVDYSLFEPMSDGFRNMVQEGVESTYTTFLERVAQG 470 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R I + ++ GR+W+G +AK +GL+D +G ++ + L +K + K Sbjct: 471 RKITVAEADSMAQGRVWSGLDAKNLGLVDELGNLDDAIKGAAELAEISEF-GVKIFPKYK 529 Query: 257 NYWFCDLKNLSISS 270 + + +++ +S Sbjct: 530 SGFERFMEDYGGAS 543 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 41/272 (15%), Positives = 103/272 (37%), Gaps = 26/272 (9%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVED-NSPHVARIAIRGQIED------------- 49 ++ + V+ + + V S + S + I I+ ++D Sbjct: 11 IIGCLIAFGVLFGMFLIFVALLSGEDDEKTIKSDSILEIQIQNPVQDYVGRDESDPFAGL 70 Query: 50 ------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 E+I I+ D+ + ++ + +AI R ++ K + Sbjct: 71 FQQAQGLDEIIHAIKVAKNDNKIKGISINNNFILAGLSQTQAIRRELEDFKTSGKFVYAY 130 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 ++ Y ++ ++ + E + G+ + + K +K GV ++ ++ K+ Sbjct: 131 ADLYVQKDYYLASVADSLFLNEVGSLDFKGLSSEVLFYKDLQEKAGVKMEVIRHGKYKSA 190 Query: 164 PSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKK 220 P+ +E++ +++++ S + V ++ SRN+ + ++D A++ Sbjct: 191 VEPYLANEMSEANRTQIKELLSSLWGSMVDEIAISRNMTPENLNSIADTLGGRMPQLARQ 250 Query: 221 VGLIDVVGGQEEVWQSLY---ALGVDQSIRKI 249 GL+D V +E L L VD+ + + Sbjct: 251 SGLVDGVLFFDEYENKLKNALKLAVDKDLNYV 282 >gi|317123138|ref|YP_004103141.1| signal peptide peptidase A [Thermaerobacter marianensis DSM 12885] gi|315593118|gb|ADU52414.1| signal peptide peptidase A [Thermaerobacter marianensis DSM 12885] Length = 311 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 140/280 (50%), Gaps = 16/280 (5%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDD 64 V + + ++ + +A + I G I + E++ ++++ D Sbjct: 22 VVALLWPGAGTAPGGRGTGQIAVVTIDGPIAGGGSAEGLLGAVVGADEVVAQLQKARDDP 81 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVA 123 + A+++ +++PGGSA A + I A+Q+++ KPV+ + ++ AS GY I+ ++ IVA Sbjct: 82 AVRAVVIRMNTPGGSAAAAQEIGVAVQRLRDAGKPVVASIADLGASGGYWIAAMADRIVA 141 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 SL GSIGV+ + + + KLG+ ++++KS P K S + + +++Q +V+ Sbjct: 142 NPASLTGSIGVIMEVTHYEDLYQKLGIDVETIKSGPYKDIGSATRPLTEEERRLLQGLVN 201 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 Y FV +V+ R + ++ L L+DGR++TG +AK+ GL+D +G E+ L Sbjct: 202 DIYQQFVDVVARGRKLSRERVLELADGRVFTGRQAKEAGLVDELGTFEDAADLAAELAGL 261 Query: 244 QSIRKIKDWNPPKNYWFCD-LKNLSISSLLEDTIPLMKQT 282 + ++ D++ P + S L L+ Q Sbjct: 262 ED-YELVDYSSPGSLLDLLRWFGTSGRLGLAQGAGLVPQL 300 >gi|153809450|ref|ZP_01962118.1| hypothetical protein BACCAC_03765 [Bacteroides caccae ATCC 43185] gi|149127910|gb|EDM19132.1| hypothetical protein BACCAC_03765 [Bacteroides caccae ATCC 43185] Length = 592 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 67/261 (25%), Positives = 129/261 (49%), Gaps = 13/261 (4%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 + + VA G+I D ++ + ++ +D A+++ ++SPG Sbjct: 301 PKDKSGNIVAVYYASGEITDYAGSSASDEGIVGSKVSRDLRKLKDNDDVKAVVLRVNSPG 360 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 GSA+A E I+ A++++K +KPVI + + AAS GY ISCA++ IVA T+L GSIG+ Sbjct: 361 GSAFASEQIWHAVKELKTKKPVIVSMSDYAASGGYYISCAADTIVAEPTTLTGSIGIFGM 420 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P VK DK+G++ VK++ + N ++Q + Y+ F+ +E R Sbjct: 421 VPNVKGLTDKIGLTYDVVKTNKYSDFGNIMRPFNEGEKALLQMTITEGYNTFIGRCAEGR 480 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 ++ + +++GR+WTG AK++GL+D +GG ++ A + + ++ Sbjct: 481 HMTKEAIEKIAEGRVWTGEAAKELGLVDELGGIDKALDIAVAKADI-ENYTVISYPAKQD 539 Query: 258 YWFCDLKNLSISSLLEDTIPL 278 ++ + + + + Sbjct: 540 FFSSLFETKPTNYVEAQLLKS 560 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 47/264 (17%), Positives = 98/264 (37%), Gaps = 26/264 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQ----------------------IED 49 ++S+VTL + + + V + + G I Sbjct: 22 LFIVSMVTLFGIMSASDTETIVKKNSVMMLDLNGTLVERTQENPLDILSQLFSDDSNIYG 81 Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 +++ I++ +++ + + SS G S + + I A+ K I + Sbjct: 82 LDDILSSIKKAKENENIKGIYLQASSLGTSYASLQEIRNALLDFKESGKFIIAYGDSYTQ 141 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y +S ++ ++ ++ G+ + K L K+GV ++ K K+ PF Sbjct: 142 GLYYLSSVADKVLLNPKGMIEWRGIAAAPVFYKDLLQKIGVEMQIFKVGTYKSAVEPFIS 201 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225 +E++P + + ++S + VS SR IP D +D + E+ K GL D Sbjct: 202 TEMSPANREQVTAYINSIWRQVTEGVSNSRYIPVDSLNAYADRMLMFYPAEESVKCGLAD 261 Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249 + + +V L L ++ Sbjct: 262 TLIYRNDVRNYLKELVEIGKDDQL 285 >gi|297569510|ref|YP_003690854.1| signal peptide peptidase SppA, 36K type [Desulfurivibrio alkaliphilus AHT2] gi|296925425|gb|ADH86235.1| signal peptide peptidase SppA, 36K type [Desulfurivibrio alkaliphilus AHT2] Length = 308 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 63/245 (25%), Positives = 125/245 (51%) Query: 11 RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALI 70 + +S + +++ S + + V I +RG I + +LIE++ R D A++ Sbjct: 27 FWAGVSFLIGSLLSDSPLARTARHPEGVGVIEVRGVISSADQLIEQLTDFRRKDKIKAIV 86 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + + SPGG+ A + +F +++ KPV+ + +AAS G + + I+A +L G Sbjct: 87 LRIDSPGGAVGASQELFEEVKRTNRVKPVVASMGSVAASGGLYAALGAERIIANPGTLTG 146 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ ++ ++ L K+G +++KS +K + + P +M+ ++V + + FV Sbjct: 147 SIGVIIKFANLEELLQKIGYRSETIKSGELKDTGAMDRPLTPGEREMLAEMVHAVHRQFV 206 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 V+ SR++P + +DGRI++GA A ++ L+D +G + +LG + Sbjct: 207 DDVAASRDLPVGQVEAFADGRIFSGARALELQLVDALGNLNDAAMLAASLGGLDGEQVPH 266 Query: 251 DWNPP 255 PP Sbjct: 267 LIYPP 271 >gi|296113528|ref|YP_003627466.1| signal peptide peptidase SppA [Moraxella catarrhalis RH4] gi|295921222|gb|ADG61573.1| signal peptide peptidase SppA [Moraxella catarrhalis RH4] gi|326559531|gb|EGE09945.1| signal peptide peptidase SppA [Moraxella catarrhalis 7169] gi|326562731|gb|EGE13033.1| signal peptide peptidase SppA [Moraxella catarrhalis 103P14B1] gi|326567786|gb|EGE17892.1| signal peptide peptidase SppA [Moraxella catarrhalis BC1] gi|326568577|gb|EGE18648.1| signal peptide peptidase SppA [Moraxella catarrhalis BC7] gi|326568702|gb|EGE18772.1| signal peptide peptidase SppA [Moraxella catarrhalis BC8] gi|326572571|gb|EGE22560.1| signal peptide peptidase SppA [Moraxella catarrhalis CO72] gi|326574167|gb|EGE24115.1| signal peptide peptidase SppA [Moraxella catarrhalis 101P30B1] Length = 342 Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 60/247 (24%), Positives = 123/247 (49%), Gaps = 13/247 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVE---DNSPHVARIAIRGQIE-----DSQELIE 55 LK + +++ ++ L + S E N PH+A I + G I ++Q + + Sbjct: 52 FLKLLTFAFLVFFIIVLGFGCSGFGSSFERIGINEPHIAIIDVNGAIMTNGDVNAQNIND 111 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFR---AIQKVKNRKPVITEVHEMAASAGY 112 + ++ A A++++++SPGGS + I++ +++ K + + ++ AS Y Sbjct: 112 SLMEAFENNQAKAVVLNINSPGGSPVQSDEIWQMAMMLRQEYPDKKLYAIIGDLGASGAY 171 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 I+ A++ I +SLVGSIGV+ ++ + K+GV +++ + K S E+ Sbjct: 172 YIASAADEIWVNPSSLVGSIGVIMSGYNLEELMKKVGVKDRTITAGEYKDILSSSREMTE 231 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 Q +Q +++ ++ F++ V + R + L G IWTG +A ++GL D GG Sbjct: 232 TERQHIQALLNKTHQNFIKAVKQGRGSKLKNPEQNQLFSGLIWTGTDAVELGLADKTGGI 291 Query: 231 EEVWQSL 237 ++ ++L Sbjct: 292 SQLKKTL 298 >gi|296158253|ref|ZP_06841085.1| peptidase S49 [Burkholderia sp. Ch1-1] gi|295891589|gb|EFG71375.1| peptidase S49 [Burkholderia sp. Ch1-1] Length = 334 Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 71/289 (24%), Positives = 124/289 (42%), Gaps = 16/289 (5%) Query: 7 KIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIER 59 +I R+V L ++ L + V H A +A+ G+I +++++ +E Sbjct: 50 RIFFRFVFLLILLLAIWAAIDFSGDKVAATGRHTAMVALDGEISADTNANAEDISTALES 109 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISC 116 D +I+ +SPGGS I+ I++++ + P I V +M AS GY + Sbjct: 110 AFDDAGTAGVILRCNSPGGSPVQAGIIYNEIRRLRAKYPSIPLYVVVGDMCASGGYYAAA 169 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 A++ I + S+VGSIGVL +DKLG+ + S K PFS PK + Sbjct: 170 AADKIYVDKASIVGSIGVLMDSFGFTGLMDKLGIQRRLHTSGENKGFFDPFSPETPKMDE 229 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 QD++D + F+ V E R +T + G WTG ++ ++GL D G + V + Sbjct: 230 HAQDMLDQIHAQFIDAVREGRGKRLHETPDMFSGLFWTGQKSVELGLADGFGDADYVARD 289 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 L+ I D+ ++ + + + K+ Sbjct: 290 LFK------APDIVDYTVKESITDRVARKFGAAVGSGAVHAMALGGKLN 332 >gi|206577621|ref|YP_002239066.1| protease 4 [Klebsiella pneumoniae 342] gi|288935968|ref|YP_003440027.1| signal peptide peptidase SppA, 67K type [Klebsiella variicola At-22] gi|290512774|ref|ZP_06552139.1| signal peptide peptidase SppA, 67K type [Klebsiella sp. 1_1_55] gi|206566679|gb|ACI08455.1| protease 4 [Klebsiella pneumoniae 342] gi|288890677|gb|ADC58995.1| signal peptide peptidase SppA, 67K type [Klebsiella variicola At-22] gi|289774657|gb|EFD82660.1| signal peptide peptidase SppA, 67K type [Klebsiella sp. 1_1_55] Length = 617 Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 70/266 (26%), Positives = 118/266 (44%), Gaps = 22/266 (8%) Query: 38 VARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 +A I G I D +E +I D A+++ ++SPGGS A E I Sbjct: 327 IAVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKIKAIVLRVNSPGGSVTASEIIRE 386 Query: 89 AIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + K KPV+ + MAAS GY IS ++ IVA ++L GSIG+ V+ L Sbjct: 387 ELAAAKAAGKPVVVSMGGMAASGGYWISTPADYIVANPSTLTGSIGIFGVINTVENTLGS 446 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 +GV V +SP+ S + P+ Q+MQ +++ Y F+ LV+ +R +K + Sbjct: 447 IGVHTDGVATSPLADV-SSTKALPPEVQQLMQLSIENGYQRFITLVANARKSTPEKIDQI 505 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G +WTG +AK GL+D +G ++ L + + ++ Sbjct: 506 AQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KTWHLNYYQEEPTFF-------- 556 Query: 268 ISSLLEDTIPLMKQTKVQGLWAVWNP 293 S++ D++ + + W P Sbjct: 557 --SMVLDSLTGSVRASLPAAIQAWLP 580 Score = 99.3 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 99/281 (35%), Gaps = 39/281 (13%) Query: 1 MEFVLKK-IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + F+ K + +++L LV + + ++ E + + I G + D Sbjct: 19 LNFIRKLALNAIFLVLVLVCIGIWSQFSTTTSEHAARGALLLDITGVVVDKPSASSKLGV 78 Query: 52 -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91 ++++ I + D + T +++ L + G + I +A++ Sbjct: 79 IGRQLFGASSDRLQENSLFDIVQTIRQAKDDRNITGIVLDLKNFVGGDQPSMQYIGKALR 138 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + ++ + V + Y ++ +N I + V G Y K LDKL VS Sbjct: 139 EFRDSGKPVYAVGSSYSQGQYYLASFANKIWLSPQGEVDLHGFATNGLYYKSLLDKLKVS 198 Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------ 203 + K+ PF +++P A + + + ++ ++ +R I + Sbjct: 199 THVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTIAANRQITAQQLFPGAQ 258 Query: 204 --TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 L T A L+D + EV ++L Sbjct: 259 GIIDGLRKVGGDTAKYALDNKLVDELATSTEVEKALTKQFG 299 >gi|116327402|ref|YP_797122.1| periplasmic serine protease [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331960|ref|YP_801678.1| periplasmic serine protease [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120146|gb|ABJ78189.1| Periplasmic serine protease [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125649|gb|ABJ76920.1| Periplasmic serine protease [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 317 Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 64/283 (22%), Positives = 136/283 (48%), Gaps = 23/283 (8%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVEDNSPHV------------ARIAIRGQI--------- 47 T + V + +V S S+ S A I + G+I Sbjct: 10 ITFILTTLSVLIGLVNISLSTTTSKYSRVTGGTFFRTAPIGAALIKVEGEIHSGHSTFES 69 Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 S+ +++++ I ++ + +++ ++SPGG+ A + ++ + +++ + ++ + +MA Sbjct: 70 TGSESILQKLRDIEQNPNIKGILIEINSPGGTVGASQEVYNELMRLRKTRKIVVSMKDMA 129 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 AS GY I+ +++ I A ++ GSIGV+ P +K LD+ GV +++ K K S F Sbjct: 130 ASGGYYIASSADKIFALSGTITGSIGVIAMAPNIKGLLDRYGVKMRTYKEGKYKDSLSLF 189 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 + P+ +M+Q ++ +Y+ FV+ V++ RN L++GRI++G +A + L+D + Sbjct: 190 RDSTPEEDEMIQKMLSDTYNEFVQDVAKGRNQTVKSVQNLAEGRIYSGQDAFRNKLVDEI 249 Query: 228 GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270 GG++E + L L + + ++ + L Sbjct: 250 GGRKEALEELSRLCQYDGEIPL--YEEEESPFDRLFMMLGSKM 290 >gi|330007634|ref|ZP_08305981.1| signal peptide peptidase SppA [Klebsiella sp. MS 92-3] gi|328535428|gb|EGF61902.1| signal peptide peptidase SppA [Klebsiella sp. MS 92-3] Length = 617 Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 70/266 (26%), Positives = 118/266 (44%), Gaps = 22/266 (8%) Query: 38 VARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 +A I G I D +E +I D A+++ ++SPGGS A E I Sbjct: 327 IAVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKIKAIVLRVNSPGGSVTASEIIRE 386 Query: 89 AIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + K KPV+ + MAAS GY IS ++ IVA ++L GSIG+ V+ L Sbjct: 387 ELAAAKTAGKPVVVSMGGMAASGGYWISTPADYIVANPSTLTGSIGIFGVINTVENTLGS 446 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 +GV V +SP+ S + P+ Q+MQ +++ Y F+ LV+ +R +K + Sbjct: 447 IGVHTDGVATSPLADV-SSTKALPPEVQQLMQLSIENGYQRFITLVANARKSTPEKIDQI 505 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G +WTG +AK GL+D +G ++ L + + ++ Sbjct: 506 AQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KTWHLNYYQEEPTFF-------- 556 Query: 268 ISSLLEDTIPLMKQTKVQGLWAVWNP 293 S++ D++ + + W P Sbjct: 557 --SMVLDSLTGSVRASLPAAIQAWLP 580 Score = 99.7 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 46/281 (16%), Positives = 99/281 (35%), Gaps = 39/281 (13%) Query: 1 MEFVLKK-IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + F+ K + +++L LV + + S+ E + + I G + D Sbjct: 19 LNFIRKLALNAIFLVLVLVCIGIWSQFSSTTSEHAARGALLLDITGVVVDKPSASSKLGV 78 Query: 52 -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91 ++++ I + D + T +++ L + G + I +A++ Sbjct: 79 IGRQLFGASSDRLQENSLFDIVQTIRQAKDDRNITGIVLDLKNFVGGDQPSMQYIGKALR 138 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + ++ + V + Y ++ +N I + V G Y K LDKL VS Sbjct: 139 EFRDSGKPVYAVGSSYSQGQYYLASFANKIWLSPQGEVDLHGFATNGLYYKSLLDKLKVS 198 Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------ 203 + K+ PF +++P A + + + ++ ++ +R I + Sbjct: 199 THVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTIAANRQITAQQLFPGAQ 258 Query: 204 --TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 L T A L+D + EV ++L Sbjct: 259 GIIDGLRKVGGDTAKYALDNKLVDELATSTEVEKALTKQFG 299 >gi|319788342|ref|YP_004147817.1| signal peptide peptidase SppA, 67K type [Pseudoxanthomonas suwonensis 11-1] gi|317466854|gb|ADV28586.1| signal peptide peptidase SppA, 67K type [Pseudoxanthomonas suwonensis 11-1] Length = 635 Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 61/254 (24%), Positives = 114/254 (44%), Gaps = 10/254 (3%) Query: 33 DNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAG 83 D P VA + G+I + + + D+ A+++ + SPGG +A Sbjct: 335 DKRPQVAVVVAEGEITGGDQPAGTIGGESTSALLRQAREDEDIKAVVLRVDSPGGEVFAS 394 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I R + +K KPV+ + ++AAS GY IS ++ I A +++ GSIG+ P Sbjct: 395 EQIRREVALLKAAGKPVVVSMGDLAASGGYWISMNADRIYADPSTITGSIGIFGLVPNFT 454 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LDK+GV V ++ ++P+ +++Q V++ Y F+ V+++R + Sbjct: 455 RTLDKIGVHTDGVGTTRYAGAFDVTRPLDPEVGRVIQSVINKGYADFIGKVADARERSVE 514 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 ++ GR+W+GA+A GL+D +GG + + + + + F Sbjct: 515 DIDQVARGRVWSGAQALDRGLVDAMGGLADAIADAASRVDLEEGKYRVRYVEKDPSPFAQ 574 Query: 263 LKNLSISSLLEDTI 276 S + T+ Sbjct: 575 FLAGMAGSRVAATL 588 Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 82/211 (38%), Gaps = 12/211 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAAS 109 ++L+ IE D + +++ L S YA + A+ ++ + E Sbjct: 102 RDLLRAIEAAREDKNIERVLLRLDGLQPSGYASLRELAAALGTLRASGKQVVAFSENLGQ 161 Query: 110 AGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167 + YL++ ++ + + G+ ++ + + +KLGV + + K+ P+ Sbjct: 162 SQYLLAAQADEVYLDPMGSLLLQGIGRYRQYFRQGLQEKLGVDVHLFRVGEYKSAAEPYI 221 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV--------LSDGRIWTGAEA 218 + ++ + ++ ++ ++ V+++R + + + A Sbjct: 222 LDAASAESKEADLYWMNDIWNRYLDDVAKARKLDKAELAAQIDQLAAGIEAAGGDIARHA 281 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 +++ L+D + +EEV L GV + Sbjct: 282 EQLKLVDGLKTREEVRDLLVERGVADEDDDL 312 >gi|297579498|ref|ZP_06941426.1| protease IV [Vibrio cholerae RC385] gi|297537092|gb|EFH75925.1| protease IV [Vibrio cholerae RC385] Length = 616 Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 14/287 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 + + ++ +A + G I D + + D + A Sbjct: 307 IGYYEYKTTIKPTTLTDANDIAIVIASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I I+ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + L+ LG+ V ++P + + + A +Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGLTTGLTQGAKDAIQLGIEHGYQ 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F+ LV+E R + L+ GR+WT +A+ +GL+D +G ++ L + Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + +++ P + DL SL D + + +Q L W Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSTLLPKSLQPLAVEWQ 591 Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 51/328 (15%), Positives = 115/328 (35%), Gaps = 40/328 (12%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51 + F+ + +LS+ + +Y + + A + + G I + Sbjct: 19 ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMES 78 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 +++E + D++ T L+++ P + I +AI + Sbjct: 79 FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203 + K+ PF +++ A + + + +V V+ +R I + Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEEF 258 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK---IKDWNPPKNYWF 260 L + A +KKVGL+D + +++V Q+L I + Sbjct: 259 VAQLKEVNGDLAALSKKVGLVDELATRQQVRQTLAETFGSDGKDSYNAIGYYEYKTTIKP 318 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288 L + + +++ + +M ++ +G Sbjct: 319 TTLTDANDIAIVIASGAIMDGSQPRGTV 346 >gi|147679177|ref|YP_001213392.1| periplasmic serine proteases [Pelotomaculum thermopropionicum SI] gi|146275274|dbj|BAF61023.1| Periplasmic serine proteases [Pelotomaculum thermopropionicum SI] Length = 310 Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 69/261 (26%), Positives = 123/261 (47%), Gaps = 15/261 (5%) Query: 40 RIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 I I G I S+++ + +R+ A+++ L+SPGG+A A + I Sbjct: 43 IIYIDGPITGGRGGGGLFETYTSSEQVTSALRNAARNPDLKAVVIRLNSPGGTAAAAQEI 102 Query: 87 FRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 ++++K K V+ + + AAS Y I+ ++ IVA +L GSIGV+ QY ++ Sbjct: 103 SAEVERLKRSGKKVVASMGDSAASGAYWIAACADQIVANPGTLTGSIGVIIQYLNLEELY 162 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV ++ KS P K SP + + Q ++D Y+ FV +V+ R+ + Sbjct: 163 SKIGVDTETFKSGPHKDMGSPSRPATAEERAIFQSMIDDIYNQFVDVVARGRHKDPAEIR 222 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L+DGRI+TG +AK++GL+D +G + L + + + P KN W Sbjct: 223 PLADGRIFTGRQAKELGLVDRLGDLHDAVLLAGELAGIKGEPAVVEIGP-KNIWQELFAG 281 Query: 266 LSISSLLEDTIPLMKQTKVQG 286 ++ + + + G Sbjct: 282 AGGNTFRKPGWLAIPGREGDG 302 >gi|153951329|ref|YP_001397333.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. doylei 269.97] gi|152938775|gb|ABS43516.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. doylei 269.97] Length = 298 Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 66/275 (24%), Positives = 128/275 (46%), Gaps = 2/275 (0%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64 +K I T + L+ + + S++ ++ RI ++G+I DS ++E+I D Sbjct: 15 IKFINTYFKTFVLLLIVIWILVPSANSSSKLANLERIDLKGEIFDSSAVLEKIINAKNDS 74 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 + ++ + SPGG+ + AI+ +K +K V+ AS YL +N I+A Sbjct: 75 NIKGVLFVIDSPGGAFAPSMELALAIKDLKIKKSVLVYASGTMASGSYLAGVGANKILAN 134 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 S +GSIGV+ Q + +KLG+ +++++ K+ + N +Q ++D Sbjct: 135 PASFIGSIGVIMQGADLSGLANKLGIKEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQ 194 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 SY F V++ R + +K ++ R++ A+AK++GLID + E + L L Sbjct: 195 SYDLFTGFVAKERVLDLNKKDQWANARVFLAAKAKELGLIDELSNYENAKKELEKLANVS 254 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 + I + + LK + S + + I + Sbjct: 255 N--PIWKEEDKIDKFLNRLKGQASSLISKSLIEIA 287 >gi|148656516|ref|YP_001276721.1| signal peptide peptidase SppA, 36K type [Roseiflexus sp. RS-1] gi|148568626|gb|ABQ90771.1| signal peptide peptidase SppA, 36K type [Roseiflexus sp. RS-1] Length = 342 Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 70/272 (25%), Positives = 122/272 (44%), Gaps = 22/272 (8%) Query: 34 NSPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVSLSSPGGSAYA 82 + + I + G I ++L+ +I + D A+++ + SPGGS A Sbjct: 70 GTDRIVVITVSGAIGADVDGLFSTGLSHEQLLSQIRTAANDSRVKAVVLRVDSPGGSVVA 129 Query: 83 GEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 ++ ++K+++R K ++ + +AAS GY IS A I A +L GS+GV+ Sbjct: 130 SNELYVELKKLRDRGKHLVISMGTVAASGGYYISMAGERIYANPDTLTGSLGVIVSLLNY 189 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 ++LG+ KS +K SP + + +V+ +Y FV ++ E R + Sbjct: 190 DEAFERLGLREYVYKSGDLKDIGSPLRPPTSEEEAVWNALVNEAYQGFVDVIVEGRGMER 249 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 + + L+DGRI+TG +AK +GLID +G E+ + L ++ Sbjct: 250 TEVIRLADGRIYTGRQAKALGLIDELGNLEDAIEGAKNLAGLSDALVVRY---RAFNTLR 306 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 DL ++ L+ PL GL AV P Sbjct: 307 DLLQANLERNLQPVDPL-------GLRAVVQP 331 >gi|238894259|ref|YP_002918993.1| protease 4 [Klebsiella pneumoniae NTUH-K2044] gi|238546575|dbj|BAH62926.1| protease IV, a signal peptide peptidase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 617 Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 70/266 (26%), Positives = 118/266 (44%), Gaps = 22/266 (8%) Query: 38 VARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 +A I G I D +E +I D A+++ ++SPGGS A E I Sbjct: 327 IAVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKIKAIVLRVNSPGGSVTASEIIRE 386 Query: 89 AIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + K KPV+ + MAAS GY IS ++ IVA ++L GSIG+ V+ L Sbjct: 387 ELAAAKAAGKPVVVSMGGMAASGGYWISTPADYIVANPSTLTGSIGIFGVINTVENTLGS 446 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 +GV V +SP+ S + P+ Q+MQ +++ Y F+ LV+ +R +K + Sbjct: 447 IGVHTDGVATSPLADV-SSTKALPPEVQQLMQLSIENGYQRFITLVANARKSTPEKIDQI 505 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G +WTG +AK GL+D +G ++ L + + ++ Sbjct: 506 AQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KTWHLNYYQEEPTFF-------- 556 Query: 268 ISSLLEDTIPLMKQTKVQGLWAVWNP 293 S++ D++ + + W P Sbjct: 557 --SMVLDSLTGSVRASLPAAIQAWLP 580 Score = 98.9 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 46/281 (16%), Positives = 98/281 (34%), Gaps = 39/281 (13%) Query: 1 MEFVLKK-IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + F+ K + +++L LV + + S+ E + I G + D Sbjct: 19 LNFIRKLALNAIFLVLVLVCIGIWSQFSSTTSEHAVRGALLLDITGVVVDKPSASSKLGV 78 Query: 52 -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91 ++++ I + D + T +++ L + G + I +A++ Sbjct: 79 IGRQLFGASSDRLQENSLFDIVQTIRQAKDDRNITGIVLDLKNFVGGDQPSMQYIGKALR 138 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + ++ + V + Y ++ +N I + V G Y K LDKL VS Sbjct: 139 EFRDSGKPVYAVGSSYSQGQYYLASFANKIWLSPQGEVDLHGFATNGLYYKSLLDKLKVS 198 Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------ 203 + K+ PF +++P A + + + ++ ++ +R I + Sbjct: 199 THVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTIAANRQITAQQLFPGAQ 258 Query: 204 --TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 L T A L+D + EV ++L Sbjct: 259 GIIDGLRKVGGDTAKYALDNKLVDELATSTEVEKALTKQFG 299 >gi|256545925|ref|ZP_05473280.1| U7 family peptidase [Anaerococcus vaginalis ATCC 51170] gi|256398347|gb|EEU11969.1| U7 family peptidase [Anaerococcus vaginalis ATCC 51170] Length = 333 Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 127/229 (55%), Gaps = 6/229 (2%) Query: 30 HVEDNSPHVARIAIRGQIEDSQ---ELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 D +A I+ G I D + +E++E I++DDS +I+ ++SPGG+ Y E I Sbjct: 61 EDGDKKNKIALISYEGAIGDGEVYDSFMEQLEDINKDDSVKGVIMQVNSPGGAVYNSEQI 120 Query: 87 FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I++++ K PV T + MAAS GY IS ++ I A+ +L GSIGV+ + Sbjct: 121 ANKIKEIQTDKKIPVFTVMKTMAASGGYYISAPTDKIYASNETLTGSIGVIMSSRSFQGL 180 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 +K G+ +++ + MK S ++ + + QD+++SS+ F+++VS+ R++ D+ Sbjct: 181 FEKYGIKEQNITTGKMKDAGSLGKDMTDEQKKYFQDLINSSFDRFIKVVSQGRSMKEDEV 240 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 L+DGR++ GA+AK GL+D +G ++ + + + ++ ++ Sbjct: 241 RKLADGRVYDGAQAKNNGLVDKIGNLDDAIEDMKKDYKL-NNPEVFEYE 288 >gi|229524006|ref|ZP_04413411.1| protease IV [Vibrio cholerae bv. albensis VL426] gi|229337587|gb|EEO02604.1| protease IV [Vibrio cholerae bv. albensis VL426] Length = 616 Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 14/287 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 + + ++ +A + G I D + + D + A Sbjct: 307 IGYYEYKTTIKPTTPTDANDIAIVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I I+ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + L+ LG+ V ++P + + + A +Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGLTTGLTQGAKDAIQLGIEHGYQ 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F+ LV+E R + L+ GR+WT +A+ +GL+D +G ++ L + Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + +++ P + DL SL D + + +Q L W Sbjct: 546 LYWVEEPLTPAQQFLQDLLGQVRVSLGLD-VSTLLPKSLQPLAVEWQ 591 Score = 89.7 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 99/284 (34%), Gaps = 37/284 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51 + F+ + +LS+ + +Y + + A + + G I + Sbjct: 19 ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 +++E + D++ T L+++ P + I +AI + Sbjct: 79 FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203 + K+ PF +++ A + + + +V V+ +R I + Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEEF 258 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 + A +KKVGL+D + +++V Q+L Sbjct: 259 VAQWKEVNGDLAALSKKVGLVDELATRQQVRQTLAETFGSDGKD 302 >gi|78049494|ref|YP_365669.1| protease IV [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037924|emb|CAJ25669.1| protease IV [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 633 Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 65/268 (24%), Positives = 122/268 (45%), Gaps = 13/268 (4%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 D+ P VA + G+I + + + D+ A+++ + SPGG +A Sbjct: 331 DSRPQVAVVVAAGEISGGEQPAGRIGGESTAALLRQARDDEEVKAVVLRVDSPGGEVFAS 390 Query: 84 EAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I R + + + KPV+ + ++AAS GY IS ++ I A +++ GSIG+ P + Sbjct: 391 EQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGSIGIFGMVPNLT 450 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LDK+GV V ++ ++P A Q++Q V++ Y F V+++R+ + Sbjct: 451 RALDKIGVHTDGVATTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTGKVAQARHQSVE 510 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261 ++ GR+W+GA+AK+ GL+D GG E + +++ P + Sbjct: 511 AIDKVARGRVWSGAQAKERGLVDAFGGMSEAVADAADRAKLSRGKFRVRYVEKPATPFSQ 570 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + S + + + L A Sbjct: 571 FMSGFAGSRMGAWMLS--DSGMARALLA 596 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 47/288 (16%), Positives = 98/288 (34%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRGQIEDS------ 50 M F + I L L +V+ + + P I G + + Sbjct: 21 MNFTRRLIFNLVFFGFLFLLLLVFVVALARGDGTKPLAERTTLVINPEGTLVEQFSADPV 80 Query: 51 ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQ 91 ++L+ IE +D ++++L S +A + + A+Q Sbjct: 81 SRSLAKAVGDKSAEEVQLRDLVRVIEAAGKDRKIERVLLNLDKLQPSGFASQREVAVALQ 140 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGV 150 K++ I E + YL++ +N + V G+ ++ + + DKLGV Sbjct: 141 KLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGV 200 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-- 206 + + K+ P+ + A + ++ +H ++ V +R + + Sbjct: 201 DVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWHRYLADVGTARKLSPAQLAAGI 260 Query: 207 ------LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 ++ A + L+D + +EEV L GV S Sbjct: 261 DTLPEGVAAAGGDLAKFALQQKLVDGLKTREEVDALLVKRGVADSDAD 308 >gi|262043079|ref|ZP_06016219.1| signal peptide peptidase SppA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039567|gb|EEW40698.1| signal peptide peptidase SppA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 617 Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 72/262 (27%), Positives = 120/262 (45%), Gaps = 14/262 (5%) Query: 38 VARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 +A I G I D +E +I D A+++ ++SPGGS A E I Sbjct: 327 IAVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKIKAIVLRVNSPGGSVTASEIIRE 386 Query: 89 AIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + K KPV+ + MAAS GY IS ++ IVA ++L GSIG+ V+ L Sbjct: 387 ELAAAKAAGKPVVVSMGGMAASGGYWISTPADYIVANPSTLTGSIGIFGVINTVENTLGS 446 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 +GV V +SP+ S + P+ Q+MQ +++ Y F+ LV+ +R +K + Sbjct: 447 IGVHTDGVATSPLADV-SSTKALPPEVQQLMQLSIENGYQRFITLVANARKSTPEKIDQI 505 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G +WTG +AK GL+D +G ++ L + + ++ L +L+ Sbjct: 506 AQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KTWHLNYYQEEPTFFSMVLDSLT 564 Query: 268 ISSLLEDTIPLMKQTKVQGLWA 289 S + ++P Q + A Sbjct: 565 GS--VRASLPAAIQAWLPAPVA 584 Score = 99.7 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 46/281 (16%), Positives = 99/281 (35%), Gaps = 39/281 (13%) Query: 1 MEFVLKK-IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + F+ K + +++L LV + + S+ E + + I G + D Sbjct: 19 LNFIRKLALNAIFLVLVLVCIGIWSQFSSTTSEHAARGALLLDITGVVVDKPSASSKLGV 78 Query: 52 -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91 ++++ I + D + T +++ L + G + I +A++ Sbjct: 79 IGRQLFGASSDRLQENSLFDIVQTIRQAKDDRNITGIVLDLKNFVGGDQPSMQYIGKALR 138 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + ++ + V + Y ++ +N I + V G Y K LDKL VS Sbjct: 139 EFRDSGKPVYAVGSSYSQGQYYLASFANKIWLSPQGEVDLHGFATNGLYYKSLLDKLKVS 198 Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------ 203 + K+ PF +++P A + + + ++ ++ +R I + Sbjct: 199 THVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTIAANRQITAQQLFPGAQ 258 Query: 204 --TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 L T A L+D + EV ++L Sbjct: 259 GIIDGLRKVGGDTAKYALDNKLVDELATSTEVEKALTKQFG 299 >gi|254413026|ref|ZP_05026798.1| signal peptide peptidase SppA, 36K type [Microcoleus chthonoplastes PCC 7420] gi|196180190|gb|EDX75182.1| signal peptide peptidase SppA, 36K type [Microcoleus chthonoplastes PCC 7420] Length = 274 Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 73/276 (26%), Positives = 135/276 (48%), Gaps = 10/276 (3%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAG 83 + +ARI I G I + Q +++ ++ + AL++ + SPGG+ Sbjct: 1 MPWPFKPKSRKQIARIEITGLIAGNTRQRVLDALKTVEE-KKFPALLLRIDSPGGTVGDS 59 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + I+ A+ +++ + +I ++AS G + + IV ++ GSIGV+ + ++ Sbjct: 60 QEIYSALMRLREKVKIIASFGNISASGGVYVGMGAEQIVTNPGTITGSIGVILRGNNLER 119 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 LDK+GVS K VKS P K E+ ++Q+++D+SY FV+ V+E+RN+ + Sbjct: 120 LLDKIGVSFKVVKSGPYKDILGFDRELTDPEKTILQEMIDTSYQQFVQTVAEARNLAVET 179 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCD 262 +DGRI+TG +A +G++D +G +E+ + L D K + PK Sbjct: 180 VRSFADGRIFTGQQALDLGVVDRLGTEEDARRWAAELVGLDPEKTKCETIEEPKRLLSRL 239 Query: 263 LKN--LSISSLLEDTIPLMK---QTKVQGLWAVWNP 293 + ++S L I ++ T Q LW ++ P Sbjct: 240 IPGNTGRMNSGLSAGINWLEFELSTSGQPLW-LYRP 274 >gi|152969758|ref|YP_001334867.1| protease 4 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954607|gb|ABR76637.1| protease IV, a signal peptide peptidase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 617 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 70/266 (26%), Positives = 118/266 (44%), Gaps = 22/266 (8%) Query: 38 VARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 +A I G I D +E +I D A+++ ++SPGGS A E I Sbjct: 327 IAVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKIKAIVLRVNSPGGSVTASEIIRE 386 Query: 89 AIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + K KPV+ + MAAS GY IS ++ IVA ++L GSIG+ V+ L Sbjct: 387 ELAAAKAAGKPVVVSMGGMAASGGYWISTPADYIVANPSTLTGSIGIFGVINTVENTLGS 446 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 +GV V +SP+ S + P+ Q+MQ +++ Y F+ LV+ +R +K + Sbjct: 447 IGVHTDGVATSPLADV-SSTKALPPEVQQLMQLSIENGYQRFITLVANARKSTPEKIDQI 505 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G +WTG +AK GL+D +G ++ L + + ++ Sbjct: 506 AQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KTWHLNYYQEEPTFF-------- 556 Query: 268 ISSLLEDTIPLMKQTKVQGLWAVWNP 293 S++ D++ + + W P Sbjct: 557 --SMVLDSLTGSVRASLPAAIQAWLP 580 Score = 99.7 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 46/281 (16%), Positives = 99/281 (35%), Gaps = 39/281 (13%) Query: 1 MEFVLKK-IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + F+ K + +++L LV + + S+ E + + I G + D Sbjct: 19 LNFIRKLALNAIFLVLVLVCIGIWSQFSSTTSEHAARGALLLDITGVVVDKPSASSKLGV 78 Query: 52 -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91 ++++ I + D + T +++ L + G + I +A++ Sbjct: 79 IGRQLFGASSDRLQENSLFDIVQTIRQAKDDRNITGIVLDLKNFVGGDQPSMQYIGKALR 138 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + ++ + V + Y ++ +N I + V G Y K LDKL VS Sbjct: 139 EFRDSGKPVYAVGSSYSQGQYYLASFANKIWLSPQGEVDLHGFATNGLYYKSLLDKLKVS 198 Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------ 203 + K+ PF +++P A + + + ++ ++ +R I + Sbjct: 199 THVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTIAANRQITAQQLFPGAL 258 Query: 204 --TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 L T A L+D + EV ++L Sbjct: 259 GIIDGLRKVGGDTAKYALDNKLVDELATSTEVEKALTKQFG 299 >gi|92113719|ref|YP_573647.1| signal peptide peptidase SppA, 36K type [Chromohalobacter salexigens DSM 3043] gi|91796809|gb|ABE58948.1| signal peptide peptidase SppA, 36K type [Chromohalobacter salexigens DSM 3043] Length = 357 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 65/274 (23%), Positives = 130/274 (47%), Gaps = 19/274 (6%) Query: 7 KIKTRYVMLSLVTLTV------VYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIE 55 K+ R+V +L+ ++ V+F+ PH+ + ++G I ++ +IE Sbjct: 69 KLFFRFVFAALIAASLAMTTYAVFFAGRDMTGAAGPHLGVVEVQGVIDAQGEASAERIIE 128 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYL 113 + + S+ +++ ++SPGGS + ++ ++++ KPV+ + ++ AS Y Sbjct: 129 GLRDAWKAPSSRGVVLHINSPGGSPVQSQRVYDEVRRLAAQGDKPVVAVIEDIGASGAYY 188 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 ++ A++ I A+ SLVGSIGV++ ++ +DK+GV + S KA PFS + + Sbjct: 189 MASAADDIYASPASLVGSIGVIYSGFGLQEAIDKVGVERRVFTSGDNKAFLDPFSPIRDE 248 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 Q V+D+++ F+ V R D L G IWTG +A +GL+D + + + Sbjct: 249 QRAFWQTVLDTTHRQFIDDVKAGRGERLDDDPRLFSGLIWTGEQALGLGLVDGLSSLDAL 308 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + + +D+ P + + L Sbjct: 309 SRERFG------GVPRRDYTPALDPLSRLSRQLG 336 >gi|226943603|ref|YP_002798676.1| peptidase S49, SppA [Azotobacter vinelandii DJ] gi|226718530|gb|ACO77701.1| Peptidase S49, SppA [Azotobacter vinelandii DJ] Length = 325 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 60/297 (20%), Positives = 123/297 (41%), Gaps = 23/297 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSS-----HVEDNSPHVARIAIRGQIEDSQ-----ELIE 55 ++ + +L L + +S + H A + +RG I D + ++ Sbjct: 36 RRWGIFFKLLGFAYLVALLAMFSPALSLREAARSGEHTALVEVRGMIADDEAASADNVVG 95 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV---ITEVHEMAASAGY 112 + +D +++ ++SPGGS I+ I++++ P + ++ AS Y Sbjct: 96 SLRAAFKDKHTKGVVLRINSPGGSPVQSGYIYDEIRRLRAEHPDTKLYAVITDLGASGAY 155 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 ++ A++ I A + SLVGSIGV +++LGV + + KA PF Sbjct: 156 YVASAADAIYADKASLVGSIGVTAASFGFVGAMERLGVERRVYTAGEHKAFLDPFQSQKE 215 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQ 230 V+ Q+V++ ++ F+ V + R L G +W+G +A ++GL+D +G Sbjct: 216 GEVRFWQEVLEVTHRQFIDSVKQGRGERLKDKEHPELFSGLVWSGEQALQLGLVDALGSA 275 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 V + + + D+ + + K L S + + + + + L Sbjct: 276 SHVAREVVG------AEDLVDFTVRETPFDRFAKKLG--SGVVERLGVWMGLQAPVL 324 >gi|208435302|ref|YP_002266968.1| signal peptide protease IV [Helicobacter pylori G27] gi|208433231|gb|ACI28102.1| signal peptide protease IV [Helicobacter pylori G27] Length = 292 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 60/277 (21%), Positives = 135/277 (48%), Gaps = 7/277 (2%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESAPSAPPNLAKLYLNGAIFSTEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P + +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ +A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQDRLMEL 252 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 + ++ + F + S S+++ + Sbjct: 253 SKVKKAYWLEKSPMER---FIEKATQSASNIITQALG 286 >gi|229543532|ref|ZP_04432592.1| signal peptide peptidase SppA, 36K type [Bacillus coagulans 36D1] gi|229327952|gb|EEN93627.1| signal peptide peptidase SppA, 36K type [Bacillus coagulans 36D1] Length = 338 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 61/282 (21%), Positives = 125/282 (44%), Gaps = 21/282 (7%) Query: 30 HVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSS 75 + S + + + G I+D+ Q +E +++ +D +I+ ++S Sbjct: 54 QDGNESKKIVVLNVNGTIQDTGTTPSLLDTGEYNHQSFLEELDQAKKDSDVKGIILHINS 113 Query: 76 PGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 PGG I + ++K +K + + AS Y IS +N I A+ +L GS+G Sbjct: 114 PGGGVAESAEIHHHLMEIKKDTKKKIYVSMGPTCASGAYYISTPANKIFASPETLTGSLG 173 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V+ + K G+ +KS K SP+ ++ +M+Q +V++SY+ FV+++ Sbjct: 174 VIMESVNYGKLAKKYGIDFPVIKSGEYKDIMSPYRDMTKSEKEMLQKMVNNSYNGFVKVI 233 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 SE R+IP ++ ++DGR++ G +A + LID G ++ ++ ++ ++ Sbjct: 234 SEGRHIPKEQVRKIADGRVYDGKQALDLHLIDKYGYLDDTIAAMKKDLHLGKA-QVVEYE 292 Query: 254 PPKN----YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 + K L + L+ Q+ L ++ Sbjct: 293 SSGGLDSLFSASAQKMLGKEAEASGLARLLSQSNAPRLMYLY 334 >gi|189218092|ref|YP_001938734.1| Periplasmic serine protease, ClpP class [Methylacidiphilum infernorum V4] gi|189184950|gb|ACD82135.1| Periplasmic serine protease, ClpP class [Methylacidiphilum infernorum V4] Length = 331 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 79/279 (28%), Positives = 135/279 (48%), Gaps = 11/279 (3%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ----------ELIERIERISRDDSATALIVSLSS 75 S +A I +RG I + ++ +++ D +IV+++S Sbjct: 46 FVSGDFSTKDSKIALIHLRGLISQDEAGSFTQNSVEDIKVQLKAAREDKKVKGIIVAINS 105 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 PGG A + I+ I+ +N KPV+ + MAAS GY + + ++A + ++ GSIGV+ Sbjct: 106 PGGEVNASDVIYHEIRLTRNVKPVVIYMESMAASGGYYSAVGGSYLMANDLTITGSIGVI 165 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 + VK +DK+G+ KS MK +P E+ P+ +Q ++D +Y+ F+ +VS+ Sbjct: 166 MESFLVKDLMDKVGIKAFVFKSGKMKDLLNPTREMTPEEQAFVQGLIDEAYNKFISIVSK 225 Query: 196 SRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 R+I +K L+DGRI+ G +A K GLID +G E+ + L QS R I+ P Sbjct: 226 ERHIDINKLKSNLADGRIFMGEDALKNGLIDGLGYFEDAFNKCKELSKVQSARLIRYVPP 285 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 K L + ++ +E P ++ G P Sbjct: 286 FKISNLFRLFSKGMTPKIELGYPAVRFPLSSGQLYYLYP 324 >gi|229521906|ref|ZP_04411323.1| protease IV [Vibrio cholerae TM 11079-80] gi|229340831|gb|EEO05836.1| protease IV [Vibrio cholerae TM 11079-80] Length = 616 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 128/287 (44%), Gaps = 14/287 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 + + ++ +A + G I D + + D + A Sbjct: 307 IGYYEYKTTIKPTTLTDANDIAIVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I ++ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRHEVEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + L+ LG+ V ++P + + + A + +Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGMTTGLTQGAKEAIQLGIEHGYQ 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F+ LV+E R + L+ GR+WT +A+ +GL+D +G ++ + L + + Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVRLAANLAHLERYN 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + ++ P +F DL SL D + + +Q L W Sbjct: 546 LYWVEKPLTPVQQFFQDLLGQVRVSLGLD-VSTLLPKSLQPLAVEWQ 591 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 50/328 (15%), Positives = 114/328 (34%), Gaps = 40/328 (12%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51 + F+ + +LS+ + +Y + + A + + G I + Sbjct: 19 ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 +++E + D++ T L+++ P + I +AI + Sbjct: 79 FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-------- 203 + K+ PF +++ A + + + +V V+ +R I Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEQF 258 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK---IKDWNPPKNYWF 260 L + A +K+VGL+D + +++V Q+L I + Sbjct: 259 VAQLKEVNGDLAALSKEVGLVDELATRQQVRQTLAETFGSDGKDSYNAIGYYEYKTTIKP 318 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288 L + + +++ + +M ++ +G Sbjct: 319 TTLTDANDIAIVVASGAIMDGSQPRGTV 346 >gi|304396127|ref|ZP_07378009.1| signal peptide peptidase SppA, 67K type [Pantoea sp. aB] gi|304356496|gb|EFM20861.1| signal peptide peptidase SppA, 67K type [Pantoea sp. aB] Length = 620 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 71/278 (25%), Positives = 131/278 (47%), Gaps = 14/278 (5%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATAL 69 ++++ +S ++A + G I D +E +I D A+ Sbjct: 311 SVSIYDYSVKPAGSQQDGNIAVVMASGAIMDGEETPGNVGGDTTAAQIRDARLDPKIKAI 370 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 I+ ++SPGGS A EAI + + KP++ + MAAS GY IS ++ IVA ++L Sbjct: 371 ILRVNSPGGSVTASEAIREELAAAQAAGKPIVVSMGGMAASGGYWISTPASYIVANPSTL 430 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIG+ ++ LD +GV V +SP+ S + + QMMQ +++ Y Sbjct: 431 TGSIGIFGVINTLENSLDSIGVHTDGVATSPLAD-ISTTKALPAEVQQMMQLTIENGYRN 489 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 FV LV++SR+ ++ ++ G +WTG++AK GL+D +G ++ + L Sbjct: 490 FVGLVAKSRHKTPEQIDAIAQGHVWTGSDAKANGLVDALGDFDDAVKKAGELAKVDK--P 547 Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + W + F D+ +++ ++ +P + + Sbjct: 548 MLSW-YQDDPSFLDMMLSQMNASVQAVLPDTLKAWLPA 584 Score = 82.4 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 100/286 (34%), Gaps = 41/286 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH---VARIAIRGQIEDSQ------ 51 + F+ + I +++L +V ++ S ++P ++ + G + D Sbjct: 19 LNFIREFILNIFLILLIVVCAGIWLQVSGSGGSSAPVQQGALKVDLSGVLVDKPSVSNRL 78 Query: 52 ---------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRA 89 ++++ I + D + +++ L G + + +A Sbjct: 79 SKIGRQLLGASSDRLQENSLFDVVDAIRQAKGDSNIKGIVLDLREFAGGDQPSLQYVGKA 138 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++ ++ I + + + A Y ++ + I + V G Y K LDKL Sbjct: 139 LREFRDSGKPIYALGDSYSQAQYYLASYATKIYLSPQGGVDLHGFATNGLYYKTLLDKLK 198 Query: 150 VSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK---- 203 V+ + K+ PF +++P A V + ++ V+ +R I ++ Sbjct: 199 VTSHVFRVGTYKSAVEPFLRDDMSPAARDADSRWVGQLWQNYLNTVAANRQITSEQLFPG 258 Query: 204 ----TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 L+ + T A L+D +G + + L Sbjct: 259 AAAIIAGLNAVKGDTAQYALDNKLVDTLGSRAAADEELIKTFGLDK 304 >gi|24216571|ref|NP_714052.1| periplasmic serine protease [Leptospira interrogans serovar Lai str. 56601] gi|24197892|gb|AAN51070.1| periplasmic serine protease [Leptospira interrogans serovar Lai str. 56601] Length = 317 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 62/283 (21%), Positives = 136/283 (48%), Gaps = 23/283 (8%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVEDNSPHV------------ARIAIRGQI--------- 47 T + + + +V S ++ S A I I G+I Sbjct: 10 ITFVLTTLSILIGLVNISLATTTSKYSRTTGGTFFSTAPIGAALIKIEGEIHSGHSTFES 69 Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 S+ +++++ I ++ + +++ ++SPGG+ A + ++ + +++ + ++ + +MA Sbjct: 70 TGSESILQKLRDIEQNPNIKGILIEINSPGGTVGASQEVYNELMRLRKTRKIVVSMKDMA 129 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 AS GY I+ A++ I A ++ GSIGV+ P +K LD+ GV +++ K K S F Sbjct: 130 ASGGYYIASAADKIFALSGTITGSIGVIAMAPNIKGLLDRYGVKMRTYKEGKYKDSLSLF 189 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 + P+ +M+Q ++ +Y+ F++ V++ RN L++G+I++G +A + L+D + Sbjct: 190 RDSTPEEDEMIQKMLSDTYNEFIQDVAKGRNQTVKSVQNLAEGKIYSGQDAFRNKLVDEI 249 Query: 228 GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270 GG++E + L L + + ++ + L Sbjct: 250 GGRKEALEELSRLCQYDGEIPL--YEEDESPFDRLFMMLGSKM 290 >gi|308187053|ref|YP_003931184.1| protease IV [Pantoea vagans C9-1] gi|308057563|gb|ADO09735.1| protease IV [Pantoea vagans C9-1] Length = 620 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 72/285 (25%), Positives = 130/285 (45%), Gaps = 22/285 (7%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATAL 69 ++++ +S ++A + G I D +E +I D A+ Sbjct: 311 SVSIYDYSVKPASSQQDGNIAVVMASGAIMDGEETPGNVGGDTTAAQIRDARLDPKIKAI 370 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 I+ ++SPGGS A EAI + + KP++ + MAAS GY IS ++ IVA ++L Sbjct: 371 ILRVNSPGGSVTASEAIREELAAAQAAGKPIVVSMGGMAASGGYWISTPASYIVANPSTL 430 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIG+ ++ LD +GV V +SP+ S + + Q+M +++ Y Sbjct: 431 TGSIGIFGVINTLENSLDSIGVHTDGVATSPLAD-ISTTKALPAEVQQLMHLTIENGYRN 489 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 FV LV++SR+ ++ ++ G +WTG++AK GL+D +G ++ + L Sbjct: 490 FVGLVAKSRHKTPEQIDAIAQGHVWTGSDAKANGLVDALGDFDDAVKKAGELAKVSK-PM 548 Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 + + + L ++ S ++ +P L A W P Sbjct: 549 LSWYQDEPTFLDMVLGQMNAS--VQAVLP-------DTLKA-WLP 583 Score = 81.6 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 100/286 (34%), Gaps = 41/286 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH---VARIAIRGQIEDSQ------ 51 + F+ + I +++L +V ++ S ++P ++ + G + D Sbjct: 19 LNFIREFILNIFLILLIVVGVGIWLQVSGSGGSSAPIQQGALKVDLSGVLVDKPSVSNRL 78 Query: 52 ---------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRA 89 ++++ I + D + +++ L G + + +A Sbjct: 79 SKIGRQLLGASSDRLQENSLFDVVDAIRQAKGDSNIKGMVLDLREFAGGDQPSLQYVGKA 138 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++ ++ I + + + A Y ++ + I + V G Y K L+KL Sbjct: 139 LREFRDSGKPIYALGDSYSQAQYYLASYATKIYLSPQGTVDLHGFATNGLYYKTLLEKLK 198 Query: 150 VSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK---- 203 V+ + K+ PF +++P A V + ++ V+ +R + ++ Sbjct: 199 VTSHVFRVGTYKSAVEPFLRDDMSPAARDADSRWVGQLWQNYLNTVAANRQLTPEQLFPG 258 Query: 204 ----TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 L+ + T A L+D +G + Q L Sbjct: 259 AAAIIAGLNAVKGDTAQYALDNKLVDALGSRAAADQELVKTFGLDK 304 >gi|296272293|ref|YP_003654924.1| signal peptide peptidase SppA, 36K type [Arcobacter nitrofigilis DSM 7299] gi|296096468|gb|ADG92418.1| signal peptide peptidase SppA, 36K type [Arcobacter nitrofigilis DSM 7299] Length = 295 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 62/245 (25%), Positives = 125/245 (51%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K KT + + + + S +++ ++ +I + G I + ++++ I + Sbjct: 16 LDFITKYFKTIVFLTIIYFIVSSNTTSSISSVEDNANLQKIELAGPILNVDKVLDEINKA 75 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + + +++ ++SPGGS + AI++++ KPV+ + AS Y S +N Sbjct: 76 KANRNIKGVLLVVNSPGGSVAPSVELSYAIKELRAVKPVVAYASGVMASGSYYASIWANK 135 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 I+A S+VGSIGV+FQ V+ + K+GVS +++K+ K + N + ++ Sbjct: 136 IIANPGSMVGSIGVIFQGANVEELMKKIGVSTQTIKAGKYKEAGTFSRAWNESEKEELES 195 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 V+ +Y F+ V+++R + ++ I+T +AKKVGLID VG LY + Sbjct: 196 VISDTYDMFITDVAKARRLKKQDNEKYANAHIFTARQAKKVGLIDEVGTISIAKNELYKI 255 Query: 241 GVDQS 245 ++ Sbjct: 256 SKVRN 260 >gi|93005622|ref|YP_580059.1| signal peptide peptidase SppA, 36K type [Psychrobacter cryohalolentis K5] gi|92393300|gb|ABE74575.1| signal peptide peptidase SppA, 36K type [Psychrobacter cryohalolentis K5] Length = 351 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 63/292 (21%), Positives = 130/292 (44%), Gaps = 15/292 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWS----SHVEDNSPHVARIAIRGQIEDSQ-----ELI 54 K + Y++L +T+ + + ++ + PH+A + ++G I ++ Sbjct: 56 FFKLLTFGYILLIFLTIGRSCSTEAPTGLDGIDTSKPHLAVVELQGTISSGDVANAYDVN 115 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAG 111 + + R ++ ++ A+ + ++SPGGS + I++ + ++ K + + +M AS Sbjct: 116 DALTRAFKNSNSKAVALDINSPGGSPVQSDEIWQTMMDLRKEYPDKKLYAVIGDMGASGA 175 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I +SLVGSIGV+ VK +DK+GV ++ + K S + Sbjct: 176 YYIASAADEIYVNPSSLVGSIGVIMPSYNVKGLMDKVGVEDLTITAGEYKDILSLSRPLT 235 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGG 229 + ++ V+D+++ F+ V E R + L G WTG ++ + GL D G Sbjct: 236 DYEEKHVEKVLDNTHKHFINAVKEGRGDRLKNPEQNKLFSGLFWTGEQSIEFGLADKKGS 295 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 + + L L + + + + L SS+ D +P + Sbjct: 296 ISSLEKQL-KLNNVVNYTPSDPFQLFMDRFAVKLGAGVGSSINLDLLPQEEG 346 >gi|217964261|ref|YP_002349939.1| exfoliative toxin [Listeria monocytogenes HCC23] gi|290894491|ref|ZP_06557447.1| peptidase [Listeria monocytogenes FSL J2-071] gi|217333531|gb|ACK39325.1| exfoliative toxin [Listeria monocytogenes HCC23] gi|290555946|gb|EFD89504.1| peptidase [Listeria monocytogenes FSL J2-071] gi|307571171|emb|CAR84350.1| signal peptide peptidase, putative [Listeria monocytogenes L99] Length = 337 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 72/280 (25%), Positives = 132/280 (47%), Gaps = 19/280 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76 E +A +++ G I+D+ + ++++E++ DD +++ ++SP Sbjct: 56 EEGGDDTIAVLSVDGTIQDTGDSGSLLGGGGYDHSFFMQQLEQVRNDDYIQGVLLYVNSP 115 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG I I +++ + P + MAAS GY IS ++ I A++ +L GS+GV Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + Q + KLGVS ++KS K S + ++MQ ++D SY+ FV++V+ Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + R + +K ++DGRI+ G +AK+ GLID G QE+ ++L I+ P Sbjct: 236 KGRGMSAEKVRKIADGRIYDGRQAKENGLIDEFGYQEDALEALKKEQGLADATVIQYDAP 295 Query: 255 PKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291 + IS + + I L K + ++ Sbjct: 296 EDFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYLY 335 >gi|167032494|ref|YP_001667725.1| signal peptide peptidase SppA, 36K type [Pseudomonas putida GB-1] gi|166858982|gb|ABY97389.1| signal peptide peptidase SppA, 36K type [Pseudomonas putida GB-1] Length = 329 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 65/276 (23%), Positives = 128/276 (46%), Gaps = 16/276 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIE 58 + K+ T + ++ L ++ H A + +RG I D + +++ + Sbjct: 43 IFFKLLTFVYLFGILVLFTPLMDMDKAASRSASHTALVEVRGVIADQEAASADNIVKSLR 102 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT---EVHEMAASAGYLIS 115 +D A+++ ++SPGGS ++ I++++ P I + ++ AS Y I+ Sbjct: 103 DAFKDSKTKAVVMRINSPGGSPVQAGYVYDEIRRLRAEYPAIKLYAVISDLGASGAYYIA 162 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I A + SLVGSIGV ++KLGV ++ S KA PFS P+ Sbjct: 163 SAADEIYADKASLVGSIGVTAAGYGFVGTMEKLGVERRAYTSGEHKAFLDPFSPEKPEET 222 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 + Q V+D++++ F+ +V + R L G +W+G +AK +GL+D +G V Sbjct: 223 RFWQGVLDTTHNQFIAMVKQGRGERLKDKEHPELFSGLVWSGEQAKALGLVDGLGSASYV 282 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 + + +++ D+ ++ + K + S Sbjct: 283 AREIVG------EKELVDFTVQESPFDRFSKRVGAS 312 >gi|320354585|ref|YP_004195924.1| signal peptide peptidase SppA, 67K type [Desulfobulbus propionicus DSM 2032] gi|320123087|gb|ADW18633.1| signal peptide peptidase SppA, 67K type [Desulfobulbus propionicus DSM 2032] Length = 621 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 68/279 (24%), Positives = 127/279 (45%), Gaps = 20/279 (7%) Query: 30 HVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSA 80 + + IA G I + +LI+RI + +D A+++ +++ GGSA Sbjct: 321 DTKGKKELIGIIAASGNILPGEGAVGQIGADDLIKRIRKARQDQRIKAIVLRITTGGGSA 380 Query: 81 YAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A E I + + + K K V+ + MAAS GY ++ +++IVAA T+L GSIG+ P Sbjct: 381 LASELIRQELAQAKKEGKIVVVSMGAMAASGGYWLAADADLIVAAPTTLTGSIGIFGAVP 440 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 V+ L LG+ V ++ + +P + ++P+ + V Y F+ +V++ R + Sbjct: 441 TVEKTLANLGIHGDGVGTTDIAHFGNPATTMSPEEETALHMEVMQGYRRFIDIVAQGRKM 500 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS----------IRKI 249 ++ +++GR+W G A K+GL+D +G EE L + Sbjct: 501 RPEQVEKIAEGRVWDGTTALKLGLVDKLGNLEEAIAEAAKLAKVPEENGLFIELTPDNYL 560 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + + + L L+ S+ L ++ Q + L Sbjct: 561 ERFKRVEQPIEALLARLTGSAALPVSLRRTAQEQFDFLL 599 Score = 72.3 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 98/277 (35%), Gaps = 36/277 (12%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------- 51 + + + L+LV + ++ ++ + ++ G I + + Sbjct: 25 VLSNLLFLALVLAILTVAFYTPKIDVPAACALVVSPAGDIVEERSPMDPMTRILGHLSGT 84 Query: 52 ---------ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVIT 101 ++++ + S D L+++ + GG S AI A++ K + Sbjct: 85 PLEKDTFLQDILDGVNAASGDARIKMLVINTNRMGGASLDQLRAIGTAVEAFKKTGKEVI 144 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + + A Y ++ ++ I V G Y++ LDKL +++ + K Sbjct: 145 ALGDSFNQAQYYLASWADKIYLHPMGAVDIRGFSVFRLYLREMLDKLAINMHVFRVGTFK 204 Query: 162 AEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGR 211 + PF ++++P+ + + + + + + R + + L+ Sbjct: 205 SAVEPFLRNDMSPEDREANSLWLGNLWQVYRDDIVRHRKLDAEVFVDNVNQMVTQLASVG 264 Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 G A GL+D + +E+ Q L + K Sbjct: 265 GDRGRLAVATGLVDGLKSHQELEQLLKEHIGVSADAK 301 >gi|257064987|ref|YP_003144659.1| signal peptide peptidase SppA, 36K type [Slackia heliotrinireducens DSM 20476] gi|256792640|gb|ACV23310.1| signal peptide peptidase SppA, 36K type [Slackia heliotrinireducens DSM 20476] Length = 382 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 71/279 (25%), Positives = 118/279 (42%), Gaps = 14/279 (5%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSL 73 + + VA I I G I+ + L + + + DD+ A+++ + Sbjct: 103 FSSLGSYGYGETTTYGDTVAVIDIDGTIQYDGTTNSPEGLRDVLTQAEEDDNIKAIVLHV 162 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 +S GG+A AGE + + KPV+ + ASA Y+IS S+ I T+ +GSIG Sbjct: 163 NSGGGTATAGEEMS--LLVADCTKPVVVSSASINASAAYMISSQSDYIFVNHTTAIGSIG 220 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + Q V ++KLGV + ++ S+ K + + + QD+VD F+ LV Sbjct: 221 TVMQTYDVSELMEKLGVDVINIASAESKDSSYGTRPLTDEEIAYYQDLVDKINAQFIGLV 280 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDW 252 SE R + + L+ G +TG +A GL D VG ++ LG + + + Sbjct: 281 SEGRGMDVSEVQALATGMEFTGDDAVDNGLADEVGTYDDALAKAAELGGIEGDDYDVVNL 340 Query: 253 NPPKNYWFCDLKNLS-----ISSLLEDTIPLMKQTKVQG 286 DL L ED I ++ + QG Sbjct: 341 YVSGYGDMSDLLGLMGYSSNTKISAEDLIAALELLQSQG 379 >gi|94266545|ref|ZP_01290231.1| Peptidase S49, SppA [delta proteobacterium MLMS-1] gi|93452820|gb|EAT03346.1| Peptidase S49, SppA [delta proteobacterium MLMS-1] Length = 306 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 61/249 (24%), Positives = 123/249 (49%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79 L + + + + ++G I + +L+ ++ R D+ A+I+ + SPGG+ Sbjct: 34 LLGSLAGGFFDSKSHREGIGVVEVKGVITSADQLLAQLAEFGRRDNIKAIILRIDSPGGA 93 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A + +F +++V +KPV+ + +AAS G + + IVA +L GSIGV+ ++ Sbjct: 94 VGASQELFAEVKRVNQQKPVVAAMGSVAASGGLYAALGAERIVANPGTLTGSIGVIIKFA 153 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 ++ +++G +++KS +K +P + P+ QM+Q++VD + F+ V+ R++ Sbjct: 154 NLEELFERIGYRSETIKSVDLKDSGAPDRPLAPEERQMLQEMVDDVHDQFIADVAADRDL 213 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 DGRI++G +A ++GL+D +G + LG R + PP+ + Sbjct: 214 STTTVRAFGDGRIFSGNQALELGLVDQLGNFNDAAMLAAELGGLDPSRVPELIYPPRRDF 273 Query: 260 FCDLKNLSI 268 L Sbjct: 274 SLLSLLLGS 282 >gi|170077749|ref|YP_001734387.1| signal peptide peptidase SppA, 67K type [Synechococcus sp. PCC 7002] gi|169885418|gb|ACA99131.1| signal peptide peptidase SppA, 67K type [Synechococcus sp. PCC 7002] Length = 594 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 59/270 (21%), Positives = 120/270 (44%), Gaps = 10/270 (3%) Query: 33 DNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAYAG 83 + VA + G I + L ++ + +D +++ ++SPGGSA A Sbjct: 306 TSENTVAVVYAEGNIVGGEGTPDTIGGDSLSRQLRELRQDPEVKVVVLRINSPGGSAIAS 365 Query: 84 EAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I R ++ ++ KPVI + ++AAS GY I+ S+ I A ++ GSIGV P ++ Sbjct: 366 EIILRELKLIREADKPVIVSMGDLAASGGYWIATESDRIFAQPNTITGSIGVFGILPNIQ 425 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 + G++ SV++ + + + + Q+ V+ Y F+ VS +R + Sbjct: 426 TIGNNNGLTWDSVQTGELANLGTASRPKTEAEMAIFQNFVNDIYGKFLDRVSAARGLTEA 485 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + ++ GR+W+G +A+ + L+D +GG ++++ P+ + Sbjct: 486 EVRQIAQGRVWSGEDAQAIRLVDELGGLSAAIAYAVDTAELGEDFTVQEYPRPQTWEEEI 545 Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 NL + + + ++Q +W Sbjct: 546 FSNLFGAQIEASDPLSQEWLRLQASIKLWR 575 Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 47/297 (15%), Positives = 99/297 (33%), Gaps = 28/297 (9%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE---------------------DSQELI 54 + + L ++ + + + G I +++ Sbjct: 29 AFIALIALFSAQEGGGRPKENSILIFNM-GTIIQDRDPSSSIGNVIAGDFPETLSLRDVT 87 Query: 55 ERIERISRDDSATALIVSL--SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 E I + DD T L + +S G A + +A+Q K I Y Sbjct: 88 ESIRAAAEDDKITGLFLDGRQNSLNGYAT-LREVRQALQDFKAAGKKIYAYDVEMTEREY 146 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEV 170 +S ++ I +V G+ + + K LD+ G+ ++ V+ K+ PF E Sbjct: 147 YLSSLADEIWLNPLGVVEMNGLGSEQLFFKGALDQYGIGVQVVRVGDYKSAVEPFTQEEF 206 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGG 229 +P+ Q + ++ + F V+ R L+D I A++ L+ + Sbjct: 207 SPENRQQTEALLSDLWTDFKDTVAGDRPFAATLPQSLADTQGILLPEVAQQEQLVTRLAY 266 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 +E+ L + + + + DL + ++S + + V G Sbjct: 267 FDEILAELKTFTGTELDKDLPQMDLADYSLEQDLAQIGVTSENTVAVVYAEGNIVGG 323 >gi|304570504|ref|YP_003004.2| PfaP [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 290 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 126/241 (52%), Gaps = 11/241 (4%) Query: 39 ARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 A I I G+I S+ +++++ I ++ + +++ ++SPGG+ A + ++ Sbjct: 25 ALIKIEGEIHSGHSTFESTGSESILQKLRDIEQNPNIKGILIEINSPGGTVGASQEVYNE 84 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 + +++ + ++ + +MAAS GY I+ A++ I A ++ GSIGV+ P +K LD+ G Sbjct: 85 LMRLRKTRKIVVSMKDMAASGGYYIASAADKIFALSGTITGSIGVIAMAPNIKGLLDRYG 144 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 V +++ K K S F + P+ +M+Q ++ +Y+ F++ V++ RN L++ Sbjct: 145 VKMRTYKEGKYKDSLSLFRDSTPEEDEMIQKMLSDTYNEFIQDVAKGRNQTVKSVQNLAE 204 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 G+I++G +A + L+D +GG++E + L L + + ++ + L Sbjct: 205 GKIYSGQDAFRNKLVDEIGGRKEALEELSRLCQYDGEIPL--YEEDESPFDRLFMMLGSK 262 Query: 270 S 270 Sbjct: 263 M 263 >gi|261403174|ref|YP_003247398.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus vulcanius M7] gi|261370167|gb|ACX72916.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus vulcanius M7] Length = 311 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 73/286 (25%), Positives = 145/286 (50%), Gaps = 23/286 (8%) Query: 5 LKKIKTRYVMLSLVT--------LTVVYFSWSSHVEDNSPHVARIAIRGQIE-------- 48 +KKI + L L+ L ++ FS + +A++ + +I Sbjct: 1 MKKIYVVIIALFLILVCLLAVGVLAILSFSGENIDLLGGNKIAKVYLCNEIYFDYSQGDG 60 Query: 49 -------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 D++ I ++++ +D+S +++ ++SPGG A E + R + ++ +KPV+ Sbjct: 61 LFPSEKKDARYYINLLDKLEKDNSVKGVLLIVNSPGGEVIASEKLARKVAELAKKKPVVV 120 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 V ++ AS Y+ S +N IVA + S+VGSIGV + + KLG+++ ++K+ K Sbjct: 121 YVEDLDASGAYMASVPANYIVAEKHSIVGSIGVRMDIIHYYGLMKKLGINVTTIKAGKYK 180 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221 SP+ + + + +Q +++ +Y FV+ V++ R++P + T ++DG+I++G +AKKV Sbjct: 181 DIGSPYRPMTKEEKEYLQKMINETYIDFVKWVAKYRHLPLNYTFKIADGKIYSGEDAKKV 240 Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 GL+D VG +E + L L + ++ F +L Sbjct: 241 GLVDEVGTEETALKKLEQLANVSNPEIVEYGLEENRGLFGLTYDLG 286 >gi|296491980|ref|YP_003662447.1| peptidase S49 SppA [Xenorhabdus nematophila ATCC 19061] gi|289176867|emb|CBJ93038.1| Peptidase S49, SppA [Xenorhabdus nematophila ATCC 19061] Length = 325 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 69/284 (24%), Positives = 126/284 (44%), Gaps = 16/284 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSS----HVEDNSPHVARIAIRGQIE-----DSQELI 54 +L+ ++ +L +V ++ + + +PH A I IRG+I D+ LI Sbjct: 40 MLRVLRASGFVLLMVGFIILASNPGGMPWQSAKAAAPHTAYINIRGEIAAGTLADADHLI 99 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAG 111 I+ + ++ A+++ ++SPGGS I+ + + + K V + ++ AS G Sbjct: 100 PSIQAAFDNPNSQAVVLRINSPGGSPVQAGRIYEEVKAQRALHPEKKVYAIIDDIGASGG 159 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ +++ I A SLVGSIGV+ +DKLG+ +++ S KA PFS + Sbjct: 160 YYIASSADEIYADRASLVGSIGVISSGFGFTGLMDKLGIERRAITSGEHKALLDPFSPLT 219 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + V+ ++ F+ V R + G +W G +AK++GLID +GG Sbjct: 220 ADMKTFWEGVLSKTHQQFIERVKAGRGERLKDDQKVFSGLLWNGEQAKEIGLIDGLGGLN 279 Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 V + + +D L SS +++ Sbjct: 280 SVARDVIHQTSLVDYTPTEDIIRR----LTQRAKLEASSFVQEL 319 >gi|148284225|ref|YP_001248315.1| periplasmic serine proteases (ClpP class) [Orientia tsutsugamushi str. Boryong] gi|146739664|emb|CAM79457.1| Periplasmic serine proteases (ClpP class) [Orientia tsutsugamushi str. Boryong] Length = 302 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 81/288 (28%), Positives = 146/288 (50%), Gaps = 11/288 (3%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVE-----DNSPHVARIAIRGQIEDSQELIERIERISRD 63 K + + L L+T VV F + + V ++A I I I D +L + +I D Sbjct: 20 KWKILTLLLITAIVVLFIFRNRVGYSPSLATGDYIANIQIDDLIYDDIKLNNLLHQIKND 79 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 D A ALI+ + SPGG+ E I+ ++ + N KPV+ + +AAS GYL++ A++ I+A Sbjct: 80 DKAKALILHIDSPGGTVAGSEKIYGILRSISNSKPVVAVLGTVAASGGYLVALAADYIIA 139 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 ++++ GSIG++ P + F +K+G+ + KS +KA PS +V P + +++ Sbjct: 140 QKSTVTGSIGIVHFSPEITEFGEKIGIKFHTFKSGELKAAPSLTEKVTPAVHEATMTLIN 199 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 Y +FV LV+E R + ++ L ++DG+ +TG +A + LID +G E+ L Sbjct: 200 DMYDFFVELVAERRQMSPEQVLKVADGKAYTGRQALSLNLIDALGTTEDALSWLQQEKKL 259 Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 ++ + + I L + L +K+ G+ A++ Sbjct: 260 SLDLRVIELHTQNK------LAGYIKLLQNNMHKLFFGSKINGVMALY 301 >gi|315635928|ref|ZP_07891190.1| signal peptide peptidase SppA [Arcobacter butzleri JV22] gi|315479907|gb|EFU70578.1| signal peptide peptidase SppA [Arcobacter butzleri JV22] Length = 294 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 72/284 (25%), Positives = 135/284 (47%), Gaps = 9/284 (3%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA---RIAIRGQIEDSQELIERI 57 ++F+ K KT + +T+ V F S + A +I + G I D + +E I Sbjct: 16 LDFITKYFKT----IVFLTIIYVVFFNSDEERITTKSTANLQKIELVGPIIDVSKTLENI 71 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 E+ D + ++ + SPGG+ + AI+++K KPV+ + AS Y S Sbjct: 72 EKAKTDTNIKGVLFVVDSPGGAVAPSVEVAYAIKELKQIKPVVVYASGVIASGSYYASIW 131 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 ++ I+A S+VGSIGV+ Q K +DK+G+ ++VK+ K +P + + Sbjct: 132 ADKIIANPGSMVGSIGVIMQGVNTKELMDKIGIQTQTVKAGKYKESGTPTRKWTEFEEKQ 191 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 +Q V+D +Y+ F+ V+ +RN+ +D +I+T +AK VGL+D V ++L Sbjct: 192 LQSVIDDTYNMFITDVATARNLDIKNYTSFADAKIFTSKQAKDVGLVDEVANITVAQKTL 251 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 L ++ + + L + ++S + + + +K Sbjct: 252 AELSKVEN--PVWKKEDKFEKFMDKLVSEAVSQISMNFVTGLKA 293 >gi|87303026|ref|ZP_01085830.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp. WH 5701] gi|87282522|gb|EAQ74481.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp. WH 5701] Length = 270 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 68/265 (25%), Positives = 131/265 (49%), Gaps = 6/265 (2%) Query: 33 DNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + +ARIAI G I + +++ + ++ + AL++ + SPGG+ + I AI Sbjct: 8 KSRKSMARIAIEGAISGPTRERVVKALRQVEERE-FPALLLRIDSPGGTVGDSQEIHAAI 66 Query: 91 QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++++ V+ ++AS G + A+ IVA ++ GSIGV+ + + L+++G Sbjct: 67 GRLRSKGCRVVASFGNISASGGVYVGVAAEKIVANPGTITGSIGVILRGNNISKLLERIG 126 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 +S ++VKS K SP + ++Q ++DSSY FV V+ R + + +D Sbjct: 127 ISFETVKSGLYKDILSPDRALTADERALLQGLIDSSYSQFVEAVATGRGLNESEVRGFAD 186 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR-KIKDWNPPKNYWFCDLKNLSI 268 GR+++GA+A +GLID +G +E + L + + + P + L++ Sbjct: 187 GRVFSGAQAIALGLIDELGDEEHARRLAARLAGLDETKTQPVIFGKPPKRLAGLIPGLNL 246 Query: 269 SSLLEDTIPLMKQTKVQGLWAVWNP 293 L+ + + Q LW +W P Sbjct: 247 LGGLQQALSMELAWCGQPLW-LWRP 270 >gi|157736751|ref|YP_001489434.1| protease IV (PspA) [Arcobacter butzleri RM4018] gi|157698605|gb|ABV66765.1| protease IV (PspA) [Arcobacter butzleri RM4018] Length = 294 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 72/284 (25%), Positives = 136/284 (47%), Gaps = 9/284 (3%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA---RIAIRGQIEDSQELIERI 57 ++F+ K KT + +T+ V F S ++ A +I + G I D + +E I Sbjct: 16 LDFITKYFKT----IVFLTIIYVVFFNSDEERISTKSTANLQKIELVGPIIDVSKTLENI 71 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 E+ D + ++ + SPGG+ + AI+++K KPV+ + AS Y S Sbjct: 72 EKAKTDTNIKGVLFVVDSPGGAVAPSVEVAYAIKELKQIKPVVVYASGVIASGSYYASIW 131 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 ++ I+A S+VGSIGV+ Q K +DK+G+ ++VK+ K +P + + Sbjct: 132 ADKIIANHGSMVGSIGVIMQGVNTKELMDKIGIQTQTVKAGKYKESGTPTRKWTEFEEKQ 191 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 +Q V+D +Y+ F+ V+ +RN+ +D +I+T +AK VGL+D V ++L Sbjct: 192 LQSVIDDTYNMFITDVATARNLDIKNYTSFADAKIFTSKQAKDVGLVDEVANITVAQKTL 251 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 L ++ + + L + ++S + + + +K Sbjct: 252 AELSKVEN--PVWKKEDKFEKFMDKLVSEAVSQISMNFVTGLKA 293 >gi|114799830|ref|YP_761326.1| signal peptide peptidase SppA, 67K type [Hyphomonas neptunium ATCC 15444] gi|114740004|gb|ABI78129.1| signal peptide peptidase SppA, 67K type [Hyphomonas neptunium ATCC 15444] Length = 592 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 60/286 (20%), Positives = 115/286 (40%), Gaps = 19/286 (6%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISR 62 + + ++ + +P +A + G I S + I + Sbjct: 276 MIDLAVYAAPTKYNSKAPLIAVVGGEGPIVTGGADGGSPFSDAPAFASDTVARAILDAAE 335 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNII 121 D+ A++ + SPGGS A + I+RA+++ K KPV+ + AAS GY +S ++ I Sbjct: 336 DEDVKAIVFRVDSPGGSPTASDQIWRAVERAKEAGKPVVVSMGAYAASGGYYVSTGADAI 395 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 +A +L GSIG+ + +K+GV+ SV A S ++ Sbjct: 396 LANRATLTGSIGIFGGKLALDGTFNKIGVTFDSVTVGGDFASAWGTSPFTETQEAEVKAS 455 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 + Y F+ V R++ YD+ ++ GR+WTG A + GL+D +G + + L Sbjct: 456 LKRGYDRFLNHVGAGRDMTYDEVHEVARGRVWTGEAALQQGLVDEIGTFMDAIEKAKELA 515 Query: 242 VDQSI--RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ ++ + K +S+ ++ Sbjct: 516 GIEADVKPRLAFYPYRKTGLEALEDLFGVSAETARAAAVISTIAGD 561 Score = 93.5 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 36/267 (13%), Positives = 87/267 (32%), Gaps = 29/267 (10%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIR-------------------GQIE 48 + ++ T++ + SS + + + G I Sbjct: 15 MILFIIVGFFFLFTLIGVAASSKPPHPDDIILTLDLNAAYPDQAPAGGLAALSGTPGFI- 73 Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA- 107 +L+ +++ DDS L + + G E + AIQ K + + Sbjct: 74 ---DLLLKLKEAESDDSVKGLFIRGADYGFGTTRAEELREAIQSFKASGKFVIAHSQGMF 130 Query: 108 ---ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 + + A++ I + + GV+F+ + K + + + + K P Sbjct: 131 GSSGPSAFHSISAADEIWMQPGTDLMVTGVVFETEFYKGLFENIDLQPQVYPFYEYKNAP 190 Query: 165 SPFSEV--NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVG 222 + ++E M+ + S + + ++E R + + A ++ Sbjct: 191 NSYNETSYTEPHRMAMEALATSIWTTALEEIAEDRGTSAGQLRAALESGPKPAETALELK 250 Query: 223 LIDVVGGQEEVWQSLYALGVDQSIRKI 249 L+D +G E+ ++ A + I Sbjct: 251 LVDKLGWPEDAEEAAIARAGNDDAEMI 277 >gi|194367369|ref|YP_002029979.1| signal peptide peptidase SppA, 67K type [Stenotrophomonas maltophilia R551-3] gi|194350173|gb|ACF53296.1| signal peptide peptidase SppA, 67K type [Stenotrophomonas maltophilia R551-3] Length = 640 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 60/257 (23%), Positives = 117/257 (45%), Gaps = 12/257 (4%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 D+ P VA + G+I + + D++ ++++ ++SPGG +A Sbjct: 338 DSRPQVAVVVAAGEISGGDLPAGRIGGESTSALLRAARDDENVKSVVLRVNSPGGEVFAS 397 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I R + ++ KPV+ + ++AAS GY IS ++ I A +++ GSIG+ P Sbjct: 398 EQIRREVVALQAAGKPVVVSMGDLAASGGYWISMNADRIYADPSTITGSIGIFGMVPNFS 457 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LDK+GV V ++ ++P Q++Q V++ Y F V+++R P + Sbjct: 458 RALDKIGVHTDGVGTTRFAGAFDVTRPMDPAVGQVIQSVINKGYADFTGRVADARKKPVE 517 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG--VDQSIRKIKDWNPPKNYWF 260 ++ GR+W+GA+AK+ GL+D GG ++ + +++ + Sbjct: 518 AVDEVARGRVWSGAQAKERGLVDAFGGLKDAVADAASRAKLGKADAYRVRYIEKAATPFA 577 Query: 261 CDLKNLSISSLLEDTIP 277 + + S + Sbjct: 578 QFVSGFAGSRAGAWMLS 594 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 76/208 (36%), Gaps = 12/208 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAAS 109 ++L+ IE D +++ L S +A + A+Q ++ + E Sbjct: 106 RDLLRVIESAKEDKKIERVVLELDKLQPSGFASLREVAAALQDLRASGKQLVAYSESMGQ 165 Query: 110 AGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167 + YL++ ++ + V G+ ++ + DKLGV + K K+ P+ Sbjct: 166 SQYLLAAQADEVYLDPMGSVVLEGLGRYRQYFRTGLQDKLGVDVHLFKVGEYKSAAEPYV 225 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV--------LSDGRIWTGAEA 218 +P + + ++ + ++ ++++R + + +S A Sbjct: 226 LDAASPASKEADLFWMNDVWQRYLGDIAKARRLDPAQLAAGIDTLPEGISAAGGDLAKFA 285 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + L+ + +EE + GV Sbjct: 286 LQQKLVTSLKTREEFEDLMIERGVADDD 313 >gi|238794514|ref|ZP_04638123.1| Protease 4 [Yersinia intermedia ATCC 29909] gi|238726197|gb|EEQ17742.1| Protease 4 [Yersinia intermedia ATCC 29909] Length = 616 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 70/272 (25%), Positives = 123/272 (45%), Gaps = 18/272 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSA 80 +A I G I D L +I + D A+I+ ++SPGGS Sbjct: 318 PTPQQGEQIAVIFANGAIIDGPQTPGNVGGDSLAAQIRQARLDPKIKAVILRVNSPGGSV 377 Query: 81 YAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A E I + ++ KP++ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 378 SASELIRSELAALRAANKPLVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVIN 437 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + L+ +GV V +SP+ + + P+ QMMQ +++ Y F+ LV+ SR+ Sbjct: 438 TFQNSLESIGVHTDGVATSPLADISVTKN-LPPEFSQMMQINIENGYKTFIDLVATSRHK 496 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPKN 257 ++ ++ G +W G +AK GL+D +G ++ + + L + + D Sbjct: 497 TPEQVDQIAQGHVWLGIDAKNNGLVDQLGDFDDAVKKVAELAKLKTWQLNWFVD-----E 551 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 DL +S+ ++ +P Q + + Sbjct: 552 PSLSDLIFGQMSASVQAMLPAAIQAWIPAPIS 583 Score = 84.7 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 48/315 (15%), Positives = 108/315 (34%), Gaps = 44/315 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + FV + I +++L ++ +Y + S + + + G + D Sbjct: 19 LNFVREFILNLFLILLILVGVGIYLQFQSKPAEPVKGALLVNLSGVVVDQPAVNNKLRQL 78 Query: 52 ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92 +++E I D++ T L++SLS G+ + I +A+++ Sbjct: 79 GREFLGASSNRLQENSLFDIVETIRLAKTDNNITGLVLSLSDFTGADQPSLQYIGKALRE 138 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 ++ I + + Y ++ +N I + V G Y K L+KL V+ Sbjct: 139 FRDSGKPIYAIGDSYNQTQYYLASFANKIYLSPQGAVDLHGFASNNLYYKSLLEKLKVTT 198 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203 + K+ P +++P A + + + ++ V+ +R + ++ Sbjct: 199 NIFRVGTYKSAVEPMIRDDMSPAAREADSRWIGGLWQNYLTAVAANRQLTPEQLFPGAAG 258 Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPK 256 L A L+D + + EV L D + I D+ P Sbjct: 259 VISGLQTAGGSPAKYALDSKLVDTLASRPEVETELVKTFGWDKKNNDFNYVSIYDYQPVP 318 Query: 257 NYWFCDLKNLSISSL 271 + + ++ Sbjct: 319 TPQQGEQIAVIFANG 333 >gi|57237078|ref|YP_178090.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni RM1221] gi|57165882|gb|AAW34661.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni RM1221] gi|315057509|gb|ADT71838.1| protease IV (PspA) [Campylobacter jejuni subsp. jejuni S3] Length = 298 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 66/275 (24%), Positives = 129/275 (46%), Gaps = 2/275 (0%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64 +K I T + L+ + + S++ N ++ RI ++G+I DS ++E+I D Sbjct: 15 IKFINTYFKTFVLLLIVIWILMPSANSSSNLANLERIDLKGEIFDSSAVLEKIINAKNDS 74 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 + ++ + SPGG+ + AI+ +K +KPV+ AS YL +N I+A Sbjct: 75 NIKGVLFVIDSPGGAFAPSMELALAIKDLKIKKPVLVYASGTMASGSYLAGVGANKILAN 134 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 S +GSIGV+ Q + +KLG+ +++++ K+ + N +Q ++D Sbjct: 135 PASFIGSIGVIMQGADLSGLANKLGIKEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQ 194 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 SY F V + R + +K ++ R++ A+AK++GLID + E + L L Sbjct: 195 SYDLFTGFVVKERALDLNKKDQWANARVFLAAKAKELGLIDELSNYENAKKELEKLANVS 254 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 + + + + L+ + S + + I + Sbjct: 255 N--PVWKEEDKIDKFLNRLEGQTSSLISKSLIEIA 287 >gi|32267191|ref|NP_861223.1| hypothetical protein HH1692 [Helicobacter hepaticus ATCC 51449] gi|32263244|gb|AAP78289.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 294 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 60/282 (21%), Positives = 131/282 (46%), Gaps = 7/282 (2%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K ++ + ++ + SP++A++ + I +S+ +IE+I Sbjct: 15 LDFINKYFK--VIVFLFIAF-LILAPDIDKSDSVSPNLAKLYLTTPIYESESFAAQIEKI 71 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 +++ + +++ + SPGG+ A I I+ + + PVI AS Y +N Sbjct: 72 TKNKNIKGVLLIIDSPGGTVGASIEIADMIKSLAQKMPVIAYTQGSMASGSYYAGMYANE 131 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 I A +L+GSIGV+F +K LDK+G+ + +K+ K + + + + +++ Sbjct: 132 IYANRGALIGSIGVIFNGLNIKEMLDKIGIKEQGIKAGSYKEVGTSMRQWSEEEKLFLEN 191 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ Y F + V ++R ++G++++ +A ++GLID VG +E +L Sbjct: 192 LLQEQYELFRKDVIKARGSRLKVVDYREFAEGKVFSAHKALQLGLIDKVGSMQEAVATLQ 251 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 + +K + + + S +L + P +K Sbjct: 252 QHTGVKEAIWLK--KDKFEVYMDKFLDSASSKILSLSAPKLK 291 >gi|222823269|ref|YP_002574842.1| protease IV [Campylobacter lari RM2100] gi|222538490|gb|ACM63591.1| protease IV [Campylobacter lari RM2100] Length = 297 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 66/273 (24%), Positives = 137/273 (50%), Gaps = 3/273 (1%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWS-SHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 ++ I T + + + + S S + + ++ ++A+I ++G+I D+ L+E+I ++ Sbjct: 14 IISFINTYFKTFVFLFIVFLILSPSKDNTKLSNANLAQINLKGEINDASTLLEQIYKLKD 73 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D++ ++ + SPGG+ I AIQ +K +KPV+ AS YL + +N+I+ Sbjct: 74 DNAIKGVLFYIDSPGGAFAPSMEIALAIQDLKAKKPVVAYAGGTIASGSYLSAVGANMII 133 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A S VGSIGV+ Q K+G+S +++K+ K + + + + + +Q++ Sbjct: 134 ANPASFVGSIGVIMQGFNASELAQKIGISDQTIKAGTYKEAGTFMRKWSKEEKEFLQNLA 193 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + SY F V+++RN+ ++T +D +++ EA K+ LID VG E + + L Sbjct: 194 NQSYILFTNFVAKNRNLDLNQTKSWADAKVFLANEALKLKLIDKVGNYELAKKEVEKLAK 253 Query: 243 DQSIRKIKD--WNPPKNYWFCDLKNLSISSLLE 273 ++ K+ + + ++L + Sbjct: 254 VKNPIWQKEDAIDKFLKRLEEQSASFFANTLAQ 286 >gi|307544582|ref|YP_003897061.1| peptidase [Halomonas elongata DSM 2581] gi|307216606|emb|CBV41876.1| putative peptidase [Halomonas elongata DSM 2581] Length = 361 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 65/265 (24%), Positives = 117/265 (44%), Gaps = 13/265 (4%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGG 78 F+ VE PH+ + + G I + +IE IER + A A+++ + SPGG Sbjct: 96 LFAAQGPVEAKGPHLGVVEVEGVIDRESPASASRVIEGIERAWKAPGAKAVVLHIDSPGG 155 Query: 79 SAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 S + I+ + +++ KP+I V ++ AS Y I+ A++ IVAA SLVGSIGV+ Sbjct: 156 SPVQSQRIYDEVMRLRESGDKPIIAVVEDIGASGAYYIASAADEIVAAPASLVGSIGVIH 215 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + + +LG+ + + K PF+++ P + Q+V+ +++ F+ V Sbjct: 216 AGFGFEQAIQRLGIERRVFTAGENKDFLDPFTDIEPSQQRFWQEVLATTHKQFIDDVKAG 275 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R L G IWTG +A +GL+D +G + + D+ P Sbjct: 276 RGDRLADDERLFSGLIWTGEQALDLGLVDRLGNLD------GEERRLLEEPRRHDYTPQL 329 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQ 281 + + + + + Sbjct: 330 DPFERLSRRFGSVMASVLGLSSTEA 354 >gi|257067187|ref|YP_003153443.1| signal peptide peptidase SppA, 36K type [Anaerococcus prevotii DSM 20548] gi|256799067|gb|ACV29722.1| signal peptide peptidase SppA, 36K type [Anaerococcus prevotii DSM 20548] Length = 327 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 65/268 (24%), Positives = 131/268 (48%), Gaps = 6/268 (2%) Query: 30 HVEDNSPHVARIAIRGQIEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + + + + G I + ++E ++ D +I++++SPGGS YA E I Sbjct: 55 QGTNPKEKIKVVDVDGVISSNDANDFVVEELKNAKEDPLVKGVILNVNSPGGSVYASERI 114 Query: 87 FRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+ + + KPV T + EMAAS GY IS ++ I A+ + GSIGV+ Q ++ Sbjct: 115 ANQIKALKEAEKPVYTVMGEMAASGGYYISALTDRIYASNETWTGSIGVIIQSYSLQGLF 174 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 +K G+ +++ + MK S +++ + + Q +VDS++ FV++V+E R + + Sbjct: 175 EKYGIKEQNITTGKMKDAGSQGRDMSKEEKEYFQGLVDSAFDRFVKIVAEGRGLSEREVR 234 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY--WFCDL 263 L+DGR++ G++A GL+D +G + + + + I++ N ++ F + Sbjct: 235 KLADGRVYDGSQALANGLVDKIGDLDSAIGDMASENNLEDPMVIRNENIMGSFSSIFSKV 294 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWAVW 291 +L S + + + ++ Sbjct: 295 TDLKKSESDLAILDKLMKNGGPRPMYLY 322 >gi|332161920|ref|YP_004298497.1| protease 4 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666150|gb|ADZ42794.1| protease 4 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 617 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 67/273 (24%), Positives = 123/273 (45%), Gaps = 18/273 (6%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 + +A + G I D L +I + D A+I+ ++SPGGS Sbjct: 317 TPTPQQGEQIAVLFANGAIMDGPQTPGNVGGDALAAQIRQARLDPKIKAVILRVNSPGGS 376 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + ++ KP++ + MAAS GY IS +N I+A ++L GSIG+ Sbjct: 377 VSASELIRTELAALRAANKPLVVSMGGMAASGGYWISTPANYIIANPSTLTGSIGIFGVI 436 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L+ +GV V +SP+ ++ P+ QMMQ +++ Y F+ LV+ +R+ Sbjct: 437 NTFQNTLESIGVHTDGVATSPLANVSVT-KDLPPEFSQMMQINIENGYKTFIDLVASARH 495 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256 ++ ++ G +W G +AK GL+D +G ++ + + L + + D Sbjct: 496 KTPEQVDQIAQGHVWIGIDAKNNGLVDQLGDFDDAVKKVAELAKLKTWQLNWFVD----- 550 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 DL +S+ ++ +P Q + + Sbjct: 551 EPSLSDLIFGQMSASVQAMLPTAIQAWLPAPIS 583 Score = 83.1 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 44/293 (15%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIE 55 +Y + S + + + G + D +++E Sbjct: 41 IYLQFQSKPAEQVKGALLVNLSGVVVDQPAVNNKLRQWGRELLGASSNRLQENSLFDIVE 100 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 I D++ T +++SL G+ + I +A+++ ++ I + E + Y + Sbjct: 101 TIRLAKADNNITGMVLSLGDFTGADQPSLQYIGKALREFRDSGKPIYAIGESYSQTQYYL 160 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172 + +N I + V G Y K L+KL V+ + K+ P +++P Sbjct: 161 ASFANKIYLSPHGTVALHGFASNNLYYKSLLEKLKVTTNIFRVGTYKSAVEPMIRDDMSP 220 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLI 224 A + + + ++ V+ +R + ++ L A L+ Sbjct: 221 AAREADTRWIGGLWQNYLTAVAANRQLTPEQLFPGGAGVVSGLQAAGGSQAQYALSSKLV 280 Query: 225 DVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 D + + E+ L D + I D+ P + + ++ Sbjct: 281 DQLATRPEMENELVKAFGWDKKNNDFNYVSIYDYQPTPTPQQGEQIAVLFANG 333 >gi|187924894|ref|YP_001896536.1| peptidase S49 [Burkholderia phytofirmans PsJN] gi|187716088|gb|ACD17312.1| peptidase S49 [Burkholderia phytofirmans PsJN] Length = 334 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 63/275 (22%), Positives = 115/275 (41%), Gaps = 14/275 (5%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSL 73 + V H A + + G+I +++++ ++ D +I+ Sbjct: 64 AIWAAIDFSGDKVAATGRHTAMVTLDGEISADTNANAEDVNTALQSAFDDAGTAGVILRC 123 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCASNIIVAAETSLVG 130 +SPGGS I+ I++++ + P I V +M AS GY + A++ I + S+VG Sbjct: 124 NSPGGSPVQAGIIYNEIRRLRAKYPSIPLYVVVGDMCASGGYYAAAAADKIYVDKASIVG 183 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGVL +DKLG+ + S K PFS PK + QD++D + F+ Sbjct: 184 SIGVLMDSFGFTGLMDKLGIQRRLHTSGENKGFFDPFSPETPKMDEHAQDMLDQIHAQFI 243 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 V + R +T + G WTG ++ ++GL D +G + V + L+ I Sbjct: 244 DAVRQGRGKRLHETPDMFSGLFWTGQKSVELGLADGLGDADYVARDLFK------APDIV 297 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 D+ ++ + + + K+ Sbjct: 298 DYTVKESITDRVARKFGAAVGSGAVHAMALGGKMN 332 >gi|299532484|ref|ZP_07045874.1| peptidase S49 [Comamonas testosteroni S44] gi|298719431|gb|EFI60398.1| peptidase S49 [Comamonas testosteroni S44] Length = 348 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 61/268 (22%), Positives = 118/268 (44%), Gaps = 7/268 (2%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISRDDSATALIVSLS 74 + V+F ++ SPH A + I+G+I + ++ + D + A+++ ++ Sbjct: 81 MWAVFFKDTATKTSTSPHTAVVEIKGEIASGADASAEFVVAAMRSAFEDSGSRAVVLLIN 140 Query: 75 SPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 SPGGS I + ++K + KP+ V E ASA Y I+ A++ I + S+VGSI Sbjct: 141 SPGGSPVQAGIINDEMTRLKAKYNKPLYAVVEESCASAAYYIAAAADEIFVDKASIVGSI 200 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GVL +DK+GV + + + K PFS ++ + + +++ + F+ + Sbjct: 201 GVLMDGFGFTGVMDKVGVERRLLTAGENKGFLDPFSPMSAQQKEFALQMLEQIHQQFIGV 260 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 V R +T + G WTG +A ++GL D +G + V + + + + Sbjct: 261 VKAGRGDRLHETPEMFSGLFWTGQQAVELGLADKLGSLDYVAREVVKAEEVIDYTRRDNV 320 Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMK 280 F + +P ++ Sbjct: 321 AERLAKRFGAAIGEGSVKAMRGLVPSIR 348 >gi|149188174|ref|ZP_01866469.1| protease IV [Vibrio shilonii AK1] gi|148838162|gb|EDL55104.1| protease IV [Vibrio shilonii AK1] Length = 617 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 68/282 (24%), Positives = 130/282 (46%), Gaps = 13/282 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSL 73 + + VA I G I D ++ +++ +DS ++++ + Sbjct: 313 LASMPYDLPKQPDNQVAVIVASGTIMDGEQPRGTVGGDTTAALLKQARENDSVKSVVLRV 372 Query: 74 SSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 SPGGSA+A E I +Q ++ KPV+ + +AAS GY IS +N I+A T++ GSI Sbjct: 373 DSPGGSAFASEVIRNEVQALRDAGKPVVVSMSSVAASGGYWISMNANKIMAQPTTITGSI 432 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 G+ + L+ +G++ V +SP + + ++ A + Q +++ Y F+ L Sbjct: 433 GIFSVVTTFEKGLNNIGINTDGVGTSPF-SGVGVTTGISEGASKAFQMGIENGYKRFITL 491 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIK 250 V+ +RN+ ++ GR+WTG +A + GL+D +G ++ LG + I ++ Sbjct: 492 VANNRNMSVTDVDSVAQGRVWTGKDALERGLVDQIGDFDDAVALAAELGGMEKYDIYWVE 551 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + P + D+ SL D + Q+ + + Sbjct: 552 EPLSPAQQFVQDIMQQVKVSLGLDISAWVPQSLLPVATQLQQ 593 Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 90/283 (31%), Gaps = 37/283 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSS-HVEDNSPHVARIAIRGQIEDSQ-------- 51 + F I + + + + I G I + Sbjct: 19 INFTRLAIINLLFFAVIAMIYFAFTQVEPAPATVKKESALVLNISGPIVEQSSYVNPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93 ++++ I S DDS L++SL P S I +A+ + Sbjct: 79 VTGSLFGRDLPKENVLFDIVDSIRHASTDDSVKGLVLSLRDMPETSLTKLRYIAKALNEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K I + Y ++ ++ + A V G Y K L+KL V+ Sbjct: 139 KATGKPIYAYGAFYNQSQYYLASYADKVYLAPDGAVLIKGYSAYSMYYKTLLEKLDVTTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203 + K+ PF +++ A + V + +V V+ +R I + Sbjct: 199 VFRVGTYKSAVEPFLRDDMSDAAKESATRWVSQLWGAYVDDVASNRQIETSVLTPTMDEF 258 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 L A +K++GL+D + +++V Q++ Sbjct: 259 LKELEAADGDLAALSKQLGLVDELVTKQQVNQAMVEAFGSDGD 301 >gi|318605561|emb|CBY27059.1| protease IV [Yersinia enterocolitica subsp. palearctica Y11] Length = 617 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 67/273 (24%), Positives = 123/273 (45%), Gaps = 18/273 (6%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 + +A + G I D L +I + D A+I+ ++SPGGS Sbjct: 317 TPTPQQGEQIAVLFANGAIMDGPQTPGNVGGDALAAQIRQARLDPKIKAVILRVNSPGGS 376 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + ++ KP++ + MAAS GY IS +N I+A ++L GSIG+ Sbjct: 377 VSASELIRTELAALRAANKPLVVSMGGMAASGGYWISTPANYIIANPSTLTGSIGIFGVI 436 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L+ +GV V +SP+ ++ P+ QMMQ +++ Y F+ LV+ +R+ Sbjct: 437 NTFQNTLESIGVHTDGVATSPLANVSVT-KDLPPEFSQMMQINIENGYKTFIDLVASARH 495 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256 ++ ++ G +W G +AK GL+D +G ++ + + L + + D Sbjct: 496 KTPEQVDQIAQGHVWIGIDAKNNGLVDQLGDFDDAVKKVAELAKLKTWQLNWFVD----- 550 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 DL +S+ ++ +P Q + + Sbjct: 551 EPSLSDLIFGQMSASVQAMLPTAIQAWLPAPIS 583 Score = 82.7 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 44/293 (15%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIE 55 +Y + S + + + G + D +++E Sbjct: 41 IYLQFQSKPAEQVKGALLVNLSGVVVDQPAVNNKLRQWGRELLGASSNRLQENSLFDIVE 100 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 I D++ T +++SL G+ + I +A+++ ++ I + E + Y + Sbjct: 101 TIRLAKADNNITGMVLSLGDFTGADQPSLQYIGKALREFRDSGKPIYAIGESYSQTQYYL 160 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172 + +N I + V G Y K L+KL V+ + K+ P +++P Sbjct: 161 ASFANKIYLSPHGTVALHGFASNNLYYKSLLEKLKVTTNIFRVGTYKSAVEPMIRDDMSP 220 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLI 224 A + + + ++ V+ +R + ++ L A L+ Sbjct: 221 AAREADTRWIGGLWQNYLTAVAANRQLTPEQLFPGAAGVVSGLQAAGGSQAQYALSSKLV 280 Query: 225 DVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 D + + E+ L D + I D+ P + + ++ Sbjct: 281 DQLATRPEMENELVKAFGWDKKNNDFNYVSIYDYQPTPTPQQGEQIAVLFANG 333 >gi|146311337|ref|YP_001176411.1| protease 4 [Enterobacter sp. 638] gi|145318213|gb|ABP60360.1| signal peptide peptidase SppA, 67K type [Enterobacter sp. 638] Length = 618 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 76/272 (27%), Positives = 122/272 (44%), Gaps = 14/272 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGG 78 + + VA + G I D +E +I D A+++ ++SPGG Sbjct: 318 TKKPSETGDSVAVVFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGG 377 Query: 79 SAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 S A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 378 SVSASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGV 437 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 V+ LD LGV V +SP+ S + P+ QMMQ +++ Y F+ LV+ESR Sbjct: 438 INTVENSLDYLGVHTDGVATSPLADVSVTKS-LPPEVSQMMQLTIENGYKRFITLVAESR 496 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 ++ ++ G +WTG +AK GL+D +G ++ L I + Sbjct: 497 KSTPEQIDKIAQGHVWTGQDAKNNGLVDSLGDFDDAVAKAAELAKL-KQWHIAYYQDEPT 555 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + +S+S + +P Q + A Sbjct: 556 FIDMVMNGMSVS--VRAMLPAAIQAYLPAPVA 585 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 106/288 (36%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVY--FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + F+ + + + + ++ V+ S S+ +++ + I G I D Sbjct: 19 LNFIRELVMNVFFIFLILVCVGVWMHISSSNQAQNSGRGALLLDITGVIVDKPSASNRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++E I + D + T +++ L + G+ + I +A+ Sbjct: 79 VIGRQLFGATSDRLQENSLFDIVEAIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V + + Y ++ +N I + V G Y K L+KL V Sbjct: 139 REFRDSGKPVIAVGDSYSQGQYYLASFANKIWLSPQGTVDLHGFATNGLYYKSLLEKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 + + K+ PF ++++P A + + ++ ++ V+ +R + ++ Sbjct: 199 TTHVFRVGTYKSAVEPFIRNDMSPAAREADSRWIGELWNNYLTTVAANRQVTPEQIFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L T A L+D +G ++ ++L K Sbjct: 259 QAMLDGLQKVDGDTAKYALDNKLVDTLGSSADIEKALTKQFGWSKEEK 306 >gi|186684393|ref|YP_001867589.1| signal peptide peptidase SppA, 36K type [Nostoc punctiforme PCC 73102] gi|186466845|gb|ACC82646.1| signal peptide peptidase SppA, 36K type [Nostoc punctiforme PCC 73102] Length = 273 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 62/260 (23%), Positives = 131/260 (50%), Gaps = 5/260 (1%) Query: 36 PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 +ARI I G I + + ++E ++ + AL++ + SPGG+ + I+ A++++ Sbjct: 11 KQIARIEITGAIAGATRKRVLEALKTVEE-KKFPALLLRIDSPGGTVGDSQEIYSALKRL 69 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + + ++ ++AS G I + IV+ ++ GSIGV+ + ++ L+K+GVS + Sbjct: 70 REKIKIVASFGNISASGGVYIGMGAEHIVSNPGTITGSIGVILRGNNLERLLEKIGVSFQ 129 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 +KS P K S ++ ++Q+++D+SY FV+ V++ R++ + +DGRI+ Sbjct: 130 VIKSGPYKDILSFDRQLTQPEENILQELIDTSYQQFVQTVADGRSLTVEAVKSFADGRIF 189 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS--ISSL 271 TG +A ++G++D +G +E+ + L + + + L S +SS Sbjct: 190 TGQQALELGVVDRLGTEEDARRWTAELVGLDPEKTLCYTLEERKPLLSRLLPGSRQVSSG 249 Query: 272 LEDTIPLMKQTKVQGLWAVW 291 + I ++ +W Sbjct: 250 IRSGIDWLEFEMSTSGLPLW 269 >gi|319651852|ref|ZP_08005977.1| signal peptide peptidase [Bacillus sp. 2_A_57_CT2] gi|317396504|gb|EFV77217.1| signal peptide peptidase [Bacillus sp. 2_A_57_CT2] Length = 336 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 70/322 (21%), Positives = 142/322 (44%), Gaps = 36/322 (11%) Query: 3 FVLKKIKTRYVML-----------SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ 51 FV + + + +A + + G I+D+ Sbjct: 16 FVFSVVLNFVTAFAFTDFESSVNELFAGSNEAFLEEVIEEGNAQKKIAVLDVNGVIQDTG 75 Query: 52 E--------------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-- 95 + ++ +E + D + A+++ ++SPGG I I +++ Sbjct: 76 DAASLFASPGYNHKGFMDNLEYVKEDGTVKAIVIKVNSPGGGVVESAEIHDKIIEIQKET 135 Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 +KPV + MAAS GY IS ++ I A+ ++ GS+GV+ Q +K GV ++ Sbjct: 136 KKPVYISMGSMAASGGYYISAPADKIFASPETMTGSLGVIMQGYNYAGLAEKYGVEFVTI 195 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215 KS P K SP ++ + +++Q ++D+SY FV+++SE R + + ++DGRI+ G Sbjct: 196 KSGPYKDIMSPTRDMTDEERKILQSMIDNSYAGFVKVISEGRGLTEAQVKEIADGRIYDG 255 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 +AK++ LID G ++V + L ++ ++ +N+ F + ++ ++ D Sbjct: 256 RQAKELNLIDGFGYADDVIEQLKKDHKLDGA-QVVEYT--ENFGFGSMFSMGARKIMGDD 312 Query: 276 I------PLMKQTKVQGLWAVW 291 + L+ Q L ++ Sbjct: 313 LEMAGMMKLLSQPNSPRLMYLY 334 >gi|317048414|ref|YP_004116062.1| signal peptide peptidase SppA, 67K type [Pantoea sp. At-9b] gi|316950031|gb|ADU69506.1| signal peptide peptidase SppA, 67K type [Pantoea sp. At-9b] Length = 618 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 72/275 (26%), Positives = 118/275 (42%), Gaps = 22/275 (8%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQELI---------ERIERISRDDSATALIVSLSSPGGS 79 ++A + G I D +E +I D A+I+ ++SPGGS Sbjct: 319 KQPTQQDGNIAVVMASGAIMDGEETAGNVGGDTTAAQIRDARLDPKIKAIILRVNSPGGS 378 Query: 80 AYAGEAIFRAIQK-VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A EAI + KPV+ + MAAS GY IS ++ IVA ++L GSIG+ Sbjct: 379 VTASEAIREELAAAHAAGKPVVVSMGGMAASGGYWISTPADYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ L +GV V +SP+ + + +MQ +++ Y FV LV+ SR+ Sbjct: 439 NTVENSLSTIGVHTDGVATSPLADVATTKALPTEVQQ-LMQLTIENGYRNFVGLVAASRH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG++AK GL+D +G ++ L P+ Sbjct: 498 KTPEQINEIAQGHVWTGSDAKANGLVDALGDFDDAVSKAAELAKI---------TTPQLS 548 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 W+ D + LL + + + VW P Sbjct: 549 WYQDDPGML--DLLLNQMSASASAIMPEALKVWLP 581 Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 46/317 (14%), Positives = 109/317 (34%), Gaps = 46/317 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + F+ + I ++++ ++ ++ S S E ++ + G + D Sbjct: 19 LNFIREFILNLFLIVLILAGVGIWLQVSGSGSTEPVQQGALKVDLTGVLVDKPSVSNRLS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 ++++ I + D + T +++ L G + + +A+ Sbjct: 79 RIGRQLLGTSSDRLQENSLFDVVDAIRQAKGDKNITGIVLDLRDFAGGDQPSLQYVGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + + + + A Y ++ +N + + V G Y K LDKL V Sbjct: 139 REFRDSGKPVYAIGDSYSQAQYYLASYANKVYLSPQGTVDLHGFATNGLYYKTLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 + + K+ PF +++P+A + + ++ VS +R I + + Sbjct: 199 NSHVFRVGTYKSAVEPFLRDDMSPEARDADSRWIGQLWQNYLNTVSANRQITPQQLFPGA 258 Query: 209 DGRI--------WTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNP 254 G I T A L+D + + Q L D I D+ Sbjct: 259 AGIISGLQAVQGDTAKYALNSKLVDALESRATADQELIKTFGWDKQNNDYRNVSIYDYTV 318 Query: 255 PKNYWFCDLKNLSISSL 271 + + ++S Sbjct: 319 KQPTQQDGNIAVVMASG 335 >gi|37526445|ref|NP_929789.1| protease 4 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785876|emb|CAE14927.1| protease IV (endopeptidase IV) (signal peptide peptidase) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 621 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 65/289 (22%), Positives = 124/289 (42%), Gaps = 22/289 (7%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDS 65 + +++ + ++A I +G I D +I + DD+ Sbjct: 308 FNAISIYDYAPQLVEGRLSSKGNIAVIVAQGAIVDGQQTQGMVGGDTTAAQIRQARLDDN 367 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAA 124 A+I+ ++SPGGS A + I + ++ KPV+ + MAAS GY I+ +N I+A Sbjct: 368 IKAVILRVNSPGGSVSASDVIRTELAALRATNKPVVVSMGGMAASGGYWIATPANYIIAN 427 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 +++L GSIG+ + L+ +G+ V ++P+ ++ + +MQ +++ Sbjct: 428 QSTLTGSIGIFGVITTYENSLEHIGIHTDGVSTTPLAGISVT-KGLSKEFSALMQLNIEN 486 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 Y+ F+ LV+ SR+ ++ ++ G +W G +AK GL+D +G ++ L Sbjct: 487 GYNNFIGLVATSRHKTREEVDNIAQGHVWIGHDAKTNGLVDQLGDFDDAVTKAAELAKLD 546 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 + +S S LL + Q V W P Sbjct: 547 NPE-----------LDWMQPEMSFSELLMSQLTTTAQAIVPEAVQAWLP 584 Score = 90.1 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 44/332 (13%), Positives = 110/332 (33%), Gaps = 44/332 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH--VARIAIRGQIEDSQ------- 51 + F+ + I ++ ++ + + + + + + + G I D Sbjct: 19 LNFIREVISNLIFIMLILVVVGSFLLYQQTNKTADSYQGALYVNLTGVIVDQVSNRTPLT 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 ++++ I + D+ T L++ L G+ + I +AI Sbjct: 79 QLGRELFGTSSNKFQENSLFDIVDSIRQAKTDNKITGLVLKLDDFIGADQPSMQYIGKAI 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 + K + + + + Y ++ ++ I + VG G Y K LD L V Sbjct: 139 NEYKTSGKPVYAISDSYNQSQYYLATFADKIYLSPQGTVGLYGYSTNSLYYKSLLDSLKV 198 Query: 151 SIKSVKSSPMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 + + K+ P +++P A + ++ +H ++ V+ +R + D+ Sbjct: 199 TAHIFRVGTYKSAVEPVMRDDMSPAAREADSRWINGLWHNYLNTVATNRKLTVDQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK----IKDWNPPK 256 L A K L+D V + + + + I ++ Sbjct: 259 NEMIASLRAVGGDNAQYALKHKLVDYVAPRNVIESDMTKAFGWDEKNRHFNAISIYDYAP 318 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 L + +++ ++ + QG+ Sbjct: 319 QLVEGRLSSKGNIAVIVAQGAIVDGQQTQGMV 350 >gi|238763177|ref|ZP_04624143.1| Protease 4 [Yersinia kristensenii ATCC 33638] gi|238698676|gb|EEP91427.1| Protease 4 [Yersinia kristensenii ATCC 33638] Length = 624 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 67/273 (24%), Positives = 123/273 (45%), Gaps = 18/273 (6%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 + +A + G I D L +I + D A+I+ ++SPGGS Sbjct: 325 TPTPQQGEQIAVLFANGAIMDGPQTPGNVGGDALAAQIRQARLDPKIKAVILRVNSPGGS 384 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + ++ KP++ + MAAS GY IS +N I+A ++L GSIG+ Sbjct: 385 VSASELIRTELAALRAANKPLVVSMGGMAASGGYWISTPANYIIANPSTLTGSIGIFGVI 444 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L+ +GV V +SP+ ++ P+ QMMQ +++ Y F+ LV+ +R+ Sbjct: 445 NTFQNTLESIGVHTDGVATSPLANISVT-KDLPPEFSQMMQINIENGYKTFIDLVATARH 503 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256 ++ ++ G +W G +AK GL+D +G ++ + + L + + D Sbjct: 504 KTPEQVDQIAQGHVWIGMDAKNNGLVDQLGDFDDAVKKVAELAQLKTWQLNWFVD----- 558 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 DL +S+ ++ +P Q + + Sbjct: 559 EPSLSDLIFGQMSASVQAMLPAAIQAWLPAPIS 591 Score = 84.7 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 98/293 (33%), Gaps = 44/293 (15%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIE 55 +YF + S + + + G + D +L+E Sbjct: 49 IYFQFQSKPTEPVKGALLVNLSGVVVDQPAVNNKLRQLGRELLGASSNRLQENSLFDLVE 108 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 I D++ T L++SLS G+ + I +A+++ ++ I + + Y + Sbjct: 109 TIRLAKADNNITGLVLSLSDFTGADQPSLQYIGKALREFRDTGKPIYAIGDSYNQTQYYL 168 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172 + +N I + V G Y K L+KL V+ + K+ P +++P Sbjct: 169 ASFANKIYLSPQGAVDLHGFASNNLYYKSLLEKLKVTTNIFRVGTYKSAVEPMIRDDMSP 228 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLI 224 A + + + ++ VS +R + ++ L A L+ Sbjct: 229 AAREADSRWIGGLWQNYLTTVSANRQLTPEQLFPGAAGVISGLQAAGGSPAQYALASKLV 288 Query: 225 DVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 D + + +V L D + I D+ P + + ++ Sbjct: 289 DQLATRPDVENELVKAFGWDKKSNDFNYVSIYDYQPTPTPQQGEQIAVLFANG 341 >gi|34557816|ref|NP_907631.1| protease IV (PspA) [Wolinella succinogenes DSM 1740] gi|34483534|emb|CAE10531.1| PROTEASE IV (PSPA) [Wolinella succinogenes] Length = 290 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 70/278 (25%), Positives = 133/278 (47%), Gaps = 6/278 (2%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 +EFV + K +L LV + ++ + N ++A I+++G I + +E +ERI Sbjct: 16 LEFVTRYFKA---LLFLVIVVWIFGANEGSSAINETNLAEISLKGAILNPDSFLEELERI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 +++ + SPGG+ I I+++ + PV+ + AS GY S Sbjct: 73 ESLPRLAGVLLVVDSPGGAIAPSVEISEEIKRLSAKVPVVVYAQGVMASGGYYAGIWSKR 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 I+A + SL+GSIGV+F V K+G+ +++K+ K + N ++ Sbjct: 133 IIANKGSLIGSIGVIFNGADVSELASKIGIKTQTIKAGKYKEAGTFMRPWNEDEEGEIKR 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V Y FV V+E+R + + + + ++GR+++ EA ++GLID +G + + ++L L Sbjct: 193 LVRKQYEMFVLDVAEARGLDQEVSPLYAEGRVFSATEALELGLIDQIGIKSDAKRALEEL 252 Query: 241 GVDQSIRKIKD--WNPPKNYWFCDLKNLSISSLLEDTI 276 + ++ W W L +S+LL I Sbjct: 253 SGVKEPLWLQKEPWEKYMERWMSQAT-LQLSTLLASGI 289 >gi|262404348|ref|ZP_06080903.1| protease IV [Vibrio sp. RC586] gi|262349380|gb|EEY98518.1| protease IV [Vibrio sp. RC586] Length = 616 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 71/287 (24%), Positives = 128/287 (44%), Gaps = 14/287 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 V+ S + ++ +A + G I D L + D + A Sbjct: 307 VSYYEYKASIQPNPLTDASDIAVVVASGAIMDGSQPRGTVGGDTLAGLLREARNDSNVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I I+ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + L+ LG+ V ++P + + + A +Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPF-SGQGVTTGLTQGAKDAIQLGIEHGYQ 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F+ LV+E R++ ++ GR+WT +A+ +GL+D +G ++ L + Sbjct: 486 RFISLVAEKRSMTVKAVDEIAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQYN 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + +++ P + DL SL D + + +Q L W Sbjct: 546 LYWVEEPLTPAQQFLQDLLGEVRISLGLD-VSALLPKSLQPLATEWQ 591 Score = 96.2 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 50/328 (15%), Positives = 117/328 (35%), Gaps = 40/328 (12%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51 + F+ + +LS+ + +Y + + A + + G I + Sbjct: 19 ITFIRLALTNLIFLLSIGIIYFIYIHADAPLPTMDKSSALVLNLSGPIVEQSTHINPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 +++E + D++ T L+++ P + I +AI + Sbjct: 79 FTGSVFGEELPRENVLFDIVETLRYAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K+ + V + + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 139 KSSGKPVYAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDK 203 + K+ PF +++ A + + + +V V+ +R I + Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIAIKTLTPSMDEF 258 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK---IKDWNPPKNYWF 260 L + A +K+VGL+D + +++V Q+L + + + Sbjct: 259 VAQLKEAGGDLAALSKQVGLVDELATRQQVRQALAETFGSDGKDSYNAVSYYEYKASIQP 318 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288 L + S +++ + +M ++ +G Sbjct: 319 NPLTDASDIAVVVASGAIMDGSQPRGTV 346 >gi|317492301|ref|ZP_07950730.1| signal peptide peptidase SppA [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919640|gb|EFV40970.1| signal peptide peptidase SppA [Enterobacteriaceae bacterium 9_2_54FAA] Length = 443 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 65/279 (23%), Positives = 128/279 (45%), Gaps = 15/279 (5%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSAT 67 +++ ++ + + S +A I G I D + +I + Sbjct: 133 FSAISMYDYTPPAAKQSGSE-IAVIFADGAIMDGEATPGNVGGDTTANQIRDARLNPKIK 191 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAET 126 A+++ ++SPGGS A E I + + KPV+ + +AAS GY IS ++ IVA+ + Sbjct: 192 AIVLRVNSPGGSVSASEVIRSELAAARAAGKPVVVSMGGLAASGGYWISTPADYIVASPS 251 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 +L GSIG+ + LD +GV V +SP+ + QMMQ +++ Y Sbjct: 252 TLTGSIGIFGVINTFENTLDSIGVHTDGVATSPLADLTVT-KPLPEAFSQMMQINIENGY 310 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + F+ LV+++RN ++ ++ GR+W G++AKK GL+D +G ++ L Sbjct: 311 NNFINLVAKARNKTPEQVDAIAQGRVWLGSDAKKNGLVDQLGDFDDAVSKAAELAKL-KT 369 Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ + ++ F + + ++ +P + + Sbjct: 370 YQLNWF--VEDPSFGQMLLGQFTGSVQAALPSAVRAMLP 406 Score = 45.0 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 16/144 (11%) Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSS 185 +V G+ Y K LDKL VS + K+ P +++P A + Sbjct: 1 MVDLHGMATNNLYYKTLLDKLKVSTHIFRVGTYKSAVEPMIRDDMSPAARDADNQWLSGM 60 Query: 186 YHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 ++ ++ V+ +R I ++ L T A L+D + + EV Sbjct: 61 WNNYLTTVAANRQITTEQLFPGAEGILKGLQAVGGDTAKYALSNKLVDALASRSEVENLF 120 Query: 238 YALGV------DQSIRKIKDWNPP 255 D S + D+ PP Sbjct: 121 TKAFGWNKSTKDFSAISMYDYTPP 144 >gi|171319456|ref|ZP_02908560.1| peptidase S49 [Burkholderia ambifaria MEX-5] gi|171095307|gb|EDT40290.1| peptidase S49 [Burkholderia ambifaria MEX-5] Length = 330 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 69/286 (24%), Positives = 122/286 (42%), Gaps = 17/286 (5%) Query: 7 KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 KI R+ + L+ ++ FS S H A + I G+I +++++ ++ Sbjct: 44 KIFFRFAFLGVFLLLAFALIDFSSDSKFTSGGHHTALVTIDGEIAAGTNANAEDINTALD 103 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLIS 115 DD A +++ ++SPGGS ++ I+++ KP+ V +M AS GY I+ Sbjct: 104 AAFDDDGAAGVVLRINSPGGSPVQAGMVYDEIRRLRTKHPDKPLYVVVTDMCASGGYYIA 163 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL + KLGV + S K PFS PK Sbjct: 164 SAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVDRRLHTSGENKGFYDPFSPETPKMD 223 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q ++D + F++ V E R +T + G WTG ++ ++GL D G + V + Sbjct: 224 AHAQALLDQVHAQFIKAVKEGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDTVAR 283 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 + + D+ ++ + + L Sbjct: 284 DVLK------APDLVDYTVKESLTNRVARKFGAAVGGAAMKALAAG 323 >gi|159905972|ref|YP_001549634.1| signal peptide peptidase SppA, 36K type [Methanococcus maripaludis C6] gi|159887465|gb|ABX02402.1| signal peptide peptidase SppA, 36K type [Methanococcus maripaludis C6] Length = 307 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 71/270 (26%), Positives = 139/270 (51%), Gaps = 15/270 (5%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------ELIERIE 58 V L ++ V + +S ++A I + G I + I+ I+ Sbjct: 11 VFLVIILFLVGFILLIPGDGISSKNIAMINLDGTISSQTSEAGLFSDFEPSVNDYIKWID 70 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 +D + A+++ ++SPGG A A E + R I++ ++K VI + M SA Y + ++ Sbjct: 71 DAEKDSNIKAIVIKINSPGGEAIASEKLARKIKEASDKKVVIAYIETMGTSAAYQAASST 130 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + IVA + +LVG+IGV Q + ++KLG++I ++KS K SP + + +M Sbjct: 131 DYIVAEKQALVGNIGVRMQIIHYYGLMEKLGINISTIKSGEYKDMGSPTRPMTEEEQKMF 190 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 + +VD SY+ FV V+E+RN+ ++TL ++DG+I++G +A+KVGL+D+ G + + Sbjct: 191 ESIVDESYYEFVSWVAENRNMTINETLEVADGKIYSGTQAQKVGLVDMTGTKADAIDIAS 250 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 + + ++ +++ + + Sbjct: 251 KMANITN-PEVYEYSGSSSVGIFGMTFNDA 279 >gi|283955512|ref|ZP_06373007.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. jejuni 1336] gi|283792973|gb|EFC31747.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. jejuni 1336] Length = 298 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 69/271 (25%), Positives = 129/271 (47%), Gaps = 2/271 (0%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64 +K I T + L+ + + S++ N ++ RI ++G+I DS ++E+I D Sbjct: 15 IKFINTYFKTFVLLLIVIWILMPSANSSSNLANLERIDLKGEIFDSSAVLEKIINTKNDS 74 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 + ++ + SPGG+ + AI+ +K +KPV+ AS YL +N I+A Sbjct: 75 NIKGVLFVIDSPGGAFAPSMELALAIKDLKIKKPVLVYASGTMASGSYLAGVGANKILAN 134 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 S +GSIGV+ Q + +KLG+ +++++ K+ + N +Q ++D Sbjct: 135 PASFIGSIGVIMQGADLSGLANKLGIKEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQ 194 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 SY F V++ R + +K ++ R++ A+AK++GLID + E + L L Sbjct: 195 SYDLFTGFVAKERALDLNKKDQWANARVFLAAKAKELGLIDELSNYENAKKELEKLANVS 254 Query: 245 SIRKIKD--WNPPKNYWFCDLKNLSISSLLE 273 + ++ + N NL SL+E Sbjct: 255 NPVWKEENKIDKFLNRLEGQASNLISKSLIE 285 >gi|227326088|ref|ZP_03830112.1| protease 4 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 616 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 66/285 (23%), Positives = 126/285 (44%), Gaps = 17/285 (5%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDS 65 + +++ N+ +A + G I D +I D Sbjct: 306 FNFISIYDYAI---KPPVQNNNQIAVVFANGAIIDGPETPGMVGGDTTAAQIRAARLDPK 362 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAA 124 AL++ ++SPGGS A E I + ++ KP++ + MAAS GY IS +N I+++ Sbjct: 363 VKALVLRVNSPGGSVTASELIRSELMALRLAGKPIVVSMGGMAASGGYWISTPANTIISS 422 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 ++L GSIG+ + L+ LGV V +SP+ S + P+ QMMQ ++ Sbjct: 423 ASTLTGSIGIFGVITTFEDSLESLGVHTDGVATSPLADLSITKS-LPPEFSQMMQLSIER 481 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 Y F+ +V+++R ++ ++ G +W G++AK+ GL+D +G ++ + L Sbjct: 482 GYKNFIDIVAQARKKTPEQIDQIAQGHVWVGSDAKENGLVDQIGDFDDAVKKAAELAKL- 540 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 ++ + L ++ S +P+ Q+ + A Sbjct: 541 GQYQLNWYAEQPGLLDTMLNQVNASVY--ALLPVAVQSMLPAPVA 583 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 100/280 (35%), Gaps = 38/280 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + F+ + I +++ ++ +Y + E + + + G + D Sbjct: 19 LNFIREFILNIFLIALILVGVGIYSQVKTTPEAATKGALLVDLTGVVVDQPTVNNKLRQL 78 Query: 52 ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92 ++++ I + DD+ T +++ LS G+ + I +A+++ Sbjct: 79 GREFFGASNNRRQENSLFDIVDSIRQAKSDDNITGMVLDLSDFTGADQPSLQYIGKALRE 138 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 ++ I V + + Y ++ +N + V G Y K LDKL V+ Sbjct: 139 FRDSGKPIYAVGDSYNQSQYYLASFANTVSLTPQGSVDLHGFATNNLYFKSMLDKLKVTT 198 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203 + K+ P+ +++P A +++ + ++ VS +R I + Sbjct: 199 NIFRVGTYKSAVEPYLRDDMSPAARDADGRWINALWQQYLNTVSANRQITPQQLFPGATS 258 Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 L + T A L+D V + QSL Sbjct: 259 IIAGLQAVQGDTARYALDNKLVDEVASRSVTEQSLVKAFG 298 >gi|325106984|ref|YP_004268052.1| signal peptide peptidase SppA, 36K type [Planctomyces brasiliensis DSM 5305] gi|324967252|gb|ADY58030.1| signal peptide peptidase SppA, 36K type [Planctomyces brasiliensis DSM 5305] Length = 631 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 62/261 (23%), Positives = 115/261 (44%), Gaps = 16/261 (6%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIE--------------DSQELIERIERISRDD 64 + ++ + P VA I G I ++ +++ I + + +D Sbjct: 321 LMNLMMGVEPGTKKSRKPQVAVIYATGAIMPGRGTSGPFGEDVIGAESMVDTIRKANEND 380 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 A+++ ++SPGGSA A + I++A+++V KP + + ++A S GY IS ++ I Sbjct: 381 RVKAIVLRVNSPGGSALASDLIWKALEEV--DKPFVVSMGDVAGSGGYYISMGADYIFVE 438 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 ++ GSIGV+ + +KLG++ V S + + MQ +++ Sbjct: 439 PGTITGSIGVVGGKLAFEGLFNKLGITTSVVSRGKNSGALSATVPFSESERKAMQKMMNE 498 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 Y F R +E R++ + L+ GRI++G A ++GL+D VG E+ L + Sbjct: 499 VYEIFTRKAAEGRDMELARLKELAGGRIYSGERAVEIGLVDEVGTLEKAIAKAAELADLE 558 Query: 245 SIRKIKDWNPPKNYWFCDLKN 265 K P F L Sbjct: 559 VNDVEKLLLPKPTSPFEQLFG 579 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 48/215 (22%), Positives = 101/215 (46%), Gaps = 3/215 (1%) Query: 45 GQIEDS-QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 G++ +S ++ ER+E+ + DD +++ + +P I AI KV+ + Sbjct: 93 GEVTESLNKIEERLEKATNDDGIQGVVLKIDNPIVKLGTIHEIRHAIAKVRKAGKKVHAQ 152 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 E A + LI+ A + I E+ ++ G+ + + K LDKL + ++ K+ Sbjct: 153 LETAMLSDLLIASACDEITMPESGMLLITGLRAEVGFYKNLLDKLEIEADILRVGKFKSA 212 Query: 164 PSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221 P+ +E++P+ Q +++++D Y + V+ ++ESR + + D + A KV Sbjct: 213 AEPYTRTEMSPEFRQELEELLDDQYGYIVKTLAESRGLTEQQVTDAIDSGPHSAETAVKV 272 Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 GLID V ++ Q++ + ++ + K Sbjct: 273 GLIDAVRYPTDLEQAVLEGKDNAEFELVQKYGKKK 307 >gi|307822687|ref|ZP_07652918.1| signal peptide peptidase SppA, 36K type [Methylobacter tundripaludum SV96] gi|307736291|gb|EFO07137.1| signal peptide peptidase SppA, 36K type [Methylobacter tundripaludum SV96] Length = 321 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 70/284 (24%), Positives = 113/284 (39%), Gaps = 14/284 (4%) Query: 6 KKIKTRYVMLSLVTLTVVYFSW------SSHVEDNSPHVARIAIRGQIE-----DSQELI 54 ++ + L V L V+ D+ H A I + G I ++ +I Sbjct: 35 RRWGVFFKSLMFVYLIAVFGVAMYPKLKQDIGVDSKDHTAVIDVVGMIAEGKEANADSII 94 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV---ITEVHEMAASAG 111 E + +D +I+ +SPGGS ++ I+K+K P V ++ AS Sbjct: 95 ESLRNAVKDKHTKGIILHANSPGGSPVQSSYVYEEIRKIKKEHPELPIYAVVSDICASGC 154 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I AS+ I +SLVGSIGVL + KLGV + + KA PFS Sbjct: 155 YFIVSASDKIFVNPSSLVGSIGVLMDGFGFVDGMQKLGVERRLFTAGAHKAMLDPFSPSK 214 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 Q +Q +++ + F+ V R + + G +WTG E K+G++D VG Q+ Sbjct: 215 EDETQYIQSLLNQVHQQFIGAVKAGRGDRLKENPDMFSGLVWTGEEGVKLGIVDGVGNQD 274 Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 V + L + + I SL++ Sbjct: 275 YVAKELIGAETQVDFSRQEHLLDKIAGKLGASFGQVIGSLVQGA 318 >gi|261821537|ref|YP_003259643.1| protease 4 [Pectobacterium wasabiae WPP163] gi|261605550|gb|ACX88036.1| signal peptide peptidase SppA, 67K type [Pectobacterium wasabiae WPP163] Length = 616 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 67/285 (23%), Positives = 127/285 (44%), Gaps = 17/285 (5%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDS 65 + +++ N+ +A + G I D +I D Sbjct: 306 FNFISIYDYVV---KPPVQNNNQIAVVFANGAIIDGPETPGMVGGDTTAAQIRAARLDPK 362 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAA 124 AL++ ++SPGGS A E I + ++ KP++ + MAAS GY IS +N I+++ Sbjct: 363 VKALVLRVNSPGGSVTASELIRSELMALRLAGKPIVVSMGGMAASGGYWISTPANAIISS 422 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 ++L GSIG+ + L+ LGV V +SP+ S + P+ QMMQ ++ Sbjct: 423 ASTLTGSIGIFGVITTFEDSLESLGVHTDGVATSPLADLSITKS-LPPEFSQMMQLSIER 481 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 Y F+ +V+++R ++ ++ G +W G++AK+ GL+D +G ++ + L Sbjct: 482 GYKNFIDIVAQARKKTPEQIDQIAQGHVWVGSDAKENGLVDQIGDFDDAVKKAAELAKL- 540 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 ++ + N L ++ S +P+ Q+ + A Sbjct: 541 GQYQLNWYAEQPNLLDTMLNQVNASVY--ALLPVAVQSMLPAPVA 583 Score = 94.3 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 102/280 (36%), Gaps = 38/280 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + F+ + I +++ ++ +Y + E+ + + + G + D Sbjct: 19 LNFIREFILNIFLIALILVGVGIYSQVKTTPEEATKGALLVDLTGVVVDQPSVNNKLRQL 78 Query: 52 ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92 ++++ I + DD+ T +++ LS G+ + I +A+++ Sbjct: 79 GREFFGASNNRRQENSLFDIVDSIRQAKSDDNITGIVLDLSDFTGADQPSMQYIGKALRE 138 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 ++ I V + + Y ++ +N + V G Y K LDKL V+ Sbjct: 139 FRDSGKPIYAVGDSYNQSQYYLASFANTVSLTPQGSVDLHGFATNNLYFKSMLDKLKVTT 198 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203 + K+ P+ +++P A +++ + ++ VS +R I + Sbjct: 199 NIFRVGTYKSAVEPYLRDDMSPAARDADGRWINALWQQYLNTVSANRQITPQQLFPGATN 258 Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 L + T A L+D V + QSL + Sbjct: 259 ILAGLQAVQGDTARYALDNKLVDEVASRSVTEQSLVKVFG 298 >gi|313675194|ref|YP_004053190.1| signal peptide peptidase sppa, 67k type [Marivirga tractuosa DSM 4126] gi|312941892|gb|ADR21082.1| signal peptide peptidase SppA, 67K type [Marivirga tractuosa DSM 4126] Length = 597 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 74/248 (29%), Positives = 122/248 (49%), Gaps = 10/248 (4%) Query: 34 NSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 NS +A I G I S + I + DD A+++ ++SPGGSA A + Sbjct: 311 NSNRIAVIVAEGNIVSGKGGDGAIGSDVFAKEIRKARLDDKIKAIVLRINSPGGSALASD 370 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 ++R ++ K KPVI + +AAS GY ++ A + IVA ++ GSIG+ P + F Sbjct: 371 VMWREVKLAKKVKPVIASMSSVAASGGYYMAMACDTIVAQPNTITGSIGIFAIIPDLSKF 430 Query: 145 LD-KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 +D KLG++ V + + +N +++Q+ V+ Y F +E RN+ D+ Sbjct: 431 MDTKLGITFDRVSTGEYSDLYTVTRSLNEAEKRIIQNSVERGYEDFTSKAAEGRNMQIDE 490 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L ++ GR+W+G EAK GL+DV+GG ++ + +K + P K + L Sbjct: 491 LLAVASGRVWSGIEAKDNGLVDVLGGFDDAVNIAANSAGLEEGDYMKVYYPEKKPFIQQL 550 Query: 264 KNLSISSL 271 N SS Sbjct: 551 LNEMGSSA 558 Score = 95.8 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 49/320 (15%), Positives = 108/320 (33%), Gaps = 32/320 (10%) Query: 1 MEFVLKKIKTRYVMLSLVTLT-----VVYFSWSSHVEDNSPHVARIAIRGQIE------- 48 M+ K + L + + S S V+ + I + I Sbjct: 15 MKNFFKIFFASLLALIIFFVGFFFIFAGIASQDSEVKISENSFLEIKLNRPIVEMTSEDP 74 Query: 49 ---------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 ++++E IE D+ + + E I A+ Sbjct: 75 FAEFSQALTNEPTPISLKDILESIEHAKTDEKIKGIYLDAPFVLAGFAQMEEIRNALINF 134 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + E GY ++ ++ IV ++ G+ + + K L+KL V + Sbjct: 135 KESGKPVLAYAEAFTETGYYVASVADNIVLNPAGMLDMSGLSSEVTFFKGTLEKLKVEPQ 194 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG- 210 + K+ PF +++ + + + +++S Y F+ +++SR I + +SD Sbjct: 195 IFRVGTFKSAVEPFIRKDMSEASKEQISVLLNSVYGVFIENIAKSRGIDAKELRAISDQL 254 Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--KDWNPPKNYWFCDLKNLSI 268 ++ T +A L+ +G +EV + + KI + D N + Sbjct: 255 KVRTTEDALNFKLVTQLGYYDEVLTKMREIAGLGEDAKIPVASVKKYSKSFVADKYNSNR 314 Query: 269 SSLLEDTIPLMKQTKVQGLW 288 +++ ++ G Sbjct: 315 IAVIVAEGNIVSGKGGDGAI 334 >gi|82702195|ref|YP_411761.1| peptidase S49 [Nitrosospira multiformis ATCC 25196] gi|82410260|gb|ABB74369.1| Peptidase S49 [Nitrosospira multiformis ATCC 25196] Length = 316 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 57/268 (21%), Positives = 122/268 (45%), Gaps = 8/268 (2%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIERISRDDSA 66 ++ L ++ + + S + + H A + +RG I ++ + +++ +D Sbjct: 42 FIWLFILLFFGLGWFGDSSMSISGKHTALVDLRGVISPDSISSAENITAGLQQAFKDAKT 101 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCASNIIVA 123 +I+ ++SPGGS I I++++ P I V ++ AS GY ++ A++ I Sbjct: 102 QGVILRINSPGGSPVQAGYINDEIRRLRAEYPEIPLYAVVEDICASGGYYVAVAADKIYV 161 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 + S++GSIGVL ++KLG+ + + + KA PFS N + + + ++ Sbjct: 162 DKASIIGSIGVLINGFGFTKAMEKLGIERRLITAGENKAFLDPFSPNNREQEEYAKKMLG 221 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 + F+++V + R + + G++WTG ++ ++GL D +G E V + + Sbjct: 222 DIHEQFIQVVQQGRGERLKEKPEIFSGKVWTGQKSVELGLADGMGSAEYVAREIIKAEHI 281 Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSL 271 + F + ++S L Sbjct: 282 VDYTTREGVAERLAKRFGGVLAETLSGL 309 >gi|223041110|ref|ZP_03611365.1| signal peptide peptidase SppA, 36K type [Campylobacter rectus RM3267] gi|222877604|gb|EEF12730.1| signal peptide peptidase SppA, 36K type [Campylobacter rectus RM3267] Length = 288 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 67/277 (24%), Positives = 131/277 (47%), Gaps = 2/277 (0%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63 V K I T + + + L + F N P++A+I + G I D+ + +E I+ S+D Sbjct: 14 VFKFINTYFKTMIFLLLVFLIFFSDKEGGVNPPNLAQINLTGAIIDAHKALEEIDSASKD 73 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 ++ +++ + SPGG+ ++ A++ ++ +KPVI AS Y +++ I+A Sbjct: 74 EAIKGVLLYIDSPGGALAPSVELYTAVKNLRAKKPVIAYAGGSMASGSYYAGVSADKILA 133 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 + +GSIGV+ Q + K+GVS + VK+ K + + + +Q +V+ Sbjct: 134 NPGAFIGSIGVIMQGADLSELAAKIGVSQQIVKAGEYKEAGTFLRPWSEVEKRQLQSLVN 193 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 +SY FV V+ +R + K ++ R++ +A K+GLID V + L + Sbjct: 194 ASYAMFVSDVATARKLDVTKRDEWANARVFLARDAAKLGLIDEVSDYFSAKRELERMSGV 253 Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 + + P + + S SL+ +P ++ Sbjct: 254 AN--PVWKQKPAFEKFLDKVAGESAKSLVNLFMPTVR 288 >gi|289208372|ref|YP_003460438.1| peptidase S49 [Thioalkalivibrio sp. K90mix] gi|288944003|gb|ADC71702.1| peptidase S49 [Thioalkalivibrio sp. K90mix] Length = 321 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 74/284 (26%), Positives = 129/284 (45%), Gaps = 24/284 (8%) Query: 6 KKIKTRYVMLSLVTLTVVYF----------SWSSHVEDNSPHVARIAIRGQIEDS----- 50 ++ + +L + L + +W + HVA + + G I S Sbjct: 31 RRWGIFFKLLLFIYLFALLVLVRGGDMGLTAWFEDDREPEEHVAVVEVDGLIASSARANA 90 Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMA 107 +EL + ++R D A+++ ++S GGS AI I ++ PV V ++ Sbjct: 91 EELNKTLKRAFEADGTRAVMLRINSGGGSPVQAAAIHDEILRLKDEHEDIPVYAVVTDIG 150 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 ASA Y I+ A++ I A++ S+VGSIGV V L+ +GV + S KA PF Sbjct: 151 ASAAYYIAVAADEIYASQASMVGSIGVRLDSFGVVDLLENIGVERRLFTSGENKALLDPF 210 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 ++ V + D++D + FV +V + R + L DG IWTG A +GLID + Sbjct: 211 LPLDEGHVSHIHDLMDGLHQQFVDVVRQGRGDRLAENEELFDGLIWTGQRAVDLGLIDGL 270 Query: 228 GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 G + V + + + K+ + P ++ ++L +S+L Sbjct: 271 GTDQSVARDVIG------VEKMVTFKPRRSALQLLFEDLGMSAL 308 >gi|212710743|ref|ZP_03318871.1| hypothetical protein PROVALCAL_01811 [Providencia alcalifaciens DSM 30120] gi|212686440|gb|EEB45968.1| hypothetical protein PROVALCAL_01811 [Providencia alcalifaciens DSM 30120] Length = 617 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 69/267 (25%), Positives = 134/267 (50%), Gaps = 14/267 (5%) Query: 30 HVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSA 80 ++ ++A I ++G I D + L +I +D+ A+++ ++SPGGS Sbjct: 322 DTSNSEGNIAVIVVQGAIMDGPQTPGIAGGETLAAQIRDARLNDNIKAIVLRVNSPGGSV 381 Query: 81 YAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A + I + + +KPV+ + MAAS GY IS ++ I+A+ ++L GSIG+ Sbjct: 382 SASDLIRNELAAARAAKKPVVVSMGGMAASGGYWISTPADYIIASPSTLTGSIGIFGVIN 441 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + L+ +GV V +SP+ ++P+ MMQ +++ Y F+ LV++SR+ Sbjct: 442 TFENSLESIGVYTDGVSTSPLAGVSVT-KGISPQFADMMQITIENGYQTFIGLVAQSRHK 500 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 ++ ++ GR+W G +A K+GL+D +G ++ L +S+ DW P+ + Sbjct: 501 TPEEIDKIAQGRVWIGKDALKIGLVDQLGDFDDAVAKAAELAQVKSVE--LDWMQPELSF 558 Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQG 286 L L +++ ++ +P Q + Sbjct: 559 MDQLI-LEVTNNVQVMMPDALQAFLPP 584 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 42/273 (15%), Positives = 94/273 (34%), Gaps = 40/273 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH--VARIAIRGQIEDSQ------- 51 + F+ + I + L + Y + + + + ++G + D Sbjct: 19 INFIRQFIFNAIFFVLLFLVIGAYSLLQTDSKPEKNYFGALVVDLQGIVVDQVSSPDPFG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 ++++ I + DD T LI+ L + + I +AI Sbjct: 79 RMSRELLGSSNNLMQENSLFDIVDTIRTAANDDRITGLILRLDNLVSADQPSMAYIGKAI 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ K + + + A Y ++ ++ I A VG G Y K L+KL V Sbjct: 139 EEFKASGKSVYAMGDSYTQAQYYLASFADEIYLAPHGTVGIYGFSTDTLYYKSLLEKLKV 198 Query: 151 SIKSVKSSPMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ P ++P+A + + + + ++ ++++R + Sbjct: 199 SSHIFRVGTYKSAVEPMMRDNMSPEAREANLLWLTTLWDNYLGSIAQNRKTQAEHIFPGA 258 Query: 205 LVLSDGRIW----TGAEAKKVGLIDVVGGQEEV 233 L T A + L+D + +E+ Sbjct: 259 DKLIAQLRLVKGDTAQYALQQKLVDKIYTREQA 291 >gi|149926443|ref|ZP_01914704.1| Peptidase family U7 [Limnobacter sp. MED105] gi|149824806|gb|EDM84020.1| Peptidase family U7 [Limnobacter sp. MED105] Length = 318 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 120/281 (42%), Gaps = 12/281 (4%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNS----PHVARIAIRGQIEDS-----QELIER 56 ++ + ++ LV + ++ S S H A + + G I + Sbjct: 28 RRWGIFFKLIGLVYVGILIASVLGLTATPSLEVSRHTALVDLDGVIASDSLASADRINSS 87 Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYL 113 + + + +I+ ++SPGGS I I++++ + KP V E+ AS GY Sbjct: 88 LRTAFESEGSVGVILRINSPGGSPVQAGLINDEIKRLRAKYPEKPFYAVVEEVCASGGYY 147 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 ++ A++ I + SLVGSIGV+ ++KLGV + + + K PFSE +P Sbjct: 148 VAAAADKIYVDKASLVGSIGVVMNGFGFTGTMEKLGVERRLITAGENKGFLDPFSEADPY 207 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 + + + + + F+++V E R + L G +WTGA++ ++GL D +G + V Sbjct: 208 QTEFAKQMAEEIHQQFIQVVKEGRGEKLAQNPELFSGLVWTGAKSVELGLADELGSIDTV 267 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLED 274 + + + + + + S+ + Sbjct: 268 ARDVLKAEDILDYTEQDSFAERFAERVGVVFGQGVRSVFPE 308 >gi|262089779|gb|ACY24872.1| SppA signal peptide peptidase 67K type [uncultured organism] Length = 590 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 127/262 (48%), Gaps = 11/262 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATA 68 V + H VA + G I D S+ ++E + ++ DD+ A Sbjct: 278 VGVKSYLTDIRKHPTLEKNKVAVVVASGSIVDGHQPDGSIGSESMLELLRQVKDDDAIKA 337 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETS 127 L++ + S GGSA+A E I + ++ +K I + +AAS GY I+ A + I A T+ Sbjct: 338 LVIRIDSGGGSAFASEIIRSEVIALREKKIPIYISMGTVAASGGYWIATAGDKIWAQPTT 397 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 + GSIGV +P ++ L K+G++ V ++ + ++ KA +++Q VD+ Y Sbjct: 398 ITGSIGVFGAFPTLEKSLQKIGINTDGVGTTELAGSMRLDRPLSEKASKVVQMGVDNIYQ 457 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F+ LV+++R ++ G +WTG +AK++GL+D +G +V ++ Sbjct: 458 RFITLVADARKQEVKAIDEIAQGHVWTGNKAKEIGLVDELGTLNDVITAIAQEAKL-GSY 516 Query: 248 KIKDWNPPKNYWFCDLKNLSIS 269 K++ P + L++L+ Sbjct: 517 KVEFVQRPLSPKEELLRSLTQG 538 Score = 50.4 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 68/229 (29%), Gaps = 55/229 (24%) Query: 51 QELIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 +++E I ++D L++ GG I +A++ K I V + + Sbjct: 65 SDVVEAINNAAKDKRVAMLVLEPGRLLGGGVSKMNDIGQALENFKGAGKKIIAVSDNYSQ 124 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 Y ++ ++ I + L+ G Y K LDKLGV+I + +S K P+ Sbjct: 125 DQYYLASFADEIYLHDMGLIEITGYGRYMNYYKTALDKLGVTIHAFRSGKYKDYLEPYLR 184 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAK---------- 219 + ESR L +TG Sbjct: 185 DDMSE--------------------ESREHNAQWINELWAS--YTGKIESLRKLPPGSIN 222 Query: 220 ----------------------KVGLIDVVGGQEEVWQSLYALGVDQSI 246 + L+D + ++++ + L Sbjct: 223 DYVNNIDAHMLLTTGDSAKLALEKALVDKIVSRQDMEKMLIEQAGKSED 271 >gi|317013199|gb|ADU83807.1| protease IV (PspA) [Helicobacter pylori Lithuania75] Length = 292 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 126/256 (49%), Gaps = 4/256 (1%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESAPSTPPNLAKLYLNGAIFSTEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKDFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ +A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARKLNAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQDRLMEL 252 Query: 241 GVDQSIRKIKDWNPPK 256 + ++ + Sbjct: 253 SKVKKAYWLEKSPMER 268 >gi|317496118|ref|ZP_07954478.1| signal peptide peptidase SppA [Gemella moribillum M424] gi|316913693|gb|EFV35179.1| signal peptide peptidase SppA [Gemella moribillum M424] Length = 323 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 59/311 (18%), Positives = 137/311 (44%), Gaps = 39/311 (12%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSH---------------------------VED 33 M F K++ + +++ LV +++ + + + Sbjct: 1 MNFKNKRVISLVIVMVLVVFSLINGTLTKSTIQKQSTEDSYVQMFLRSQSVHKLTLVDGN 60 Query: 34 NSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + + +I+I G+I +I +I+ + + A+++S+++PGG Y + Sbjct: 61 SDETIQKISIEGEIGAEMTNTYSRASIINQIKEAKSNSNVKAILLSVNTPGGGVYETAEL 120 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 + ++ + K V + + A S GY +S A+ I A + GS+GV+ + + +L+ Sbjct: 121 YNELK--NSGKDVYVSMKKQATSGGYYVSMAAKKIFANTETTTGSLGVIMSFVSAQKYLN 178 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 G+ ++++S KA ++ ++ Q+ +Y FV+ +++ RN+ D+ Sbjct: 179 DHGIKQETIRSGEQKAIGGLLEDLPESTRKIYQEQNKEAYDRFVKAIAQGRNMSEDEVRK 238 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK--NYWFCDLK 264 L+DGR +TG +A + LID +G +E++ + + K+ + P K Sbjct: 239 LADGRTYTGTQAVENKLIDKIGTEEDLINFIKEDKKLFN-PKVIELRPDKAAESLLSRFV 297 Query: 265 NLSISSLLEDT 275 ++ S++ + Sbjct: 298 KATMKSIISEL 308 >gi|300864377|ref|ZP_07109249.1| signal peptide peptidase A [Oscillatoria sp. PCC 6506] gi|300337603|emb|CBN54395.1| signal peptide peptidase A [Oscillatoria sp. PCC 6506] Length = 601 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 122/248 (49%), Gaps = 9/248 (3%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGS 79 + D+ +A I G I D + + + + + +++ A+++ ++SPGGS Sbjct: 306 NARADDKKQIAVIYAEGDIVDGEGSPTQVGGDRIAKELRELRENENVKAVVLRVNSPGGS 365 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A A E I R + + +KPVI + +AAS GY IS +N I A ++ GSIGV Sbjct: 366 ATASEVIGREVVLTRKKKPVIVSMGNLAASGGYWISMNANRIFAEPNTITGSIGVFGLLM 425 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + + G+S +VK+ + P+ + +Q VVD Y F + V++SR + Sbjct: 426 NAQRLANNNGISWDTVKTGRYADSETISRPKTPQELANIQRVVDRIYDRFTQKVAQSRKL 485 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 P K ++ GR+W+G+ AK++GL+D +GG E Q+ ++++ ++ Sbjct: 486 PLAKVQEIAQGRVWSGSAAKQLGLVDEIGGIENAIQAAAKQAKLGDNWHLEEYPKRRSLE 545 Query: 260 FCDLKNLS 267 L+ LS Sbjct: 546 ERILERLS 553 Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 90/258 (34%), Gaps = 25/258 (9%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--------------------QELIE 55 LV L V S S + V + + I DS + +++ Sbjct: 29 GLVILIVAAASKESGPQVKDKSVIVLDLSLNITDSKPNTTIGEALSEDRSDTMTLRSVLD 88 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGE--AIFRAIQKVKNRKPVITEVHEMAASAGYL 113 +E +D L + S+ GS I A+Q + K I Y Sbjct: 89 ALETAKKDPKIVGLYLQGSADSGSTGWANLKEIRLALQNFQKSKKPIFAYDMDWTEREYY 148 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVN 171 + +N I V G + ++ L+K G+ ++ + K+ PF +++ Sbjct: 149 LGSVANTIAVNPLGGVEINGFSSEQMFLSGALEKFGIGVQVTRVGKYKSAVEPFLLKKMS 208 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGGQ 230 P+ Q + + + F+ V+++R + + ++D R EA LID V Sbjct: 209 PENRQQTEQWLGDIWSEFLNTVTQNRKLKTSQLQAIADNRGTLMADEALNSKLIDKVAYF 268 Query: 231 EEVWQSLYALGVDQSIRK 248 +E+ L L K Sbjct: 269 DEIVAELKKLTGIDRENK 286 >gi|227111464|ref|ZP_03825120.1| protease 4 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 616 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 66/285 (23%), Positives = 126/285 (44%), Gaps = 17/285 (5%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDS 65 + +++ N+ +A + G I D +I D Sbjct: 306 FNFISIYDYTI---KPPAQNNNQIAVVFANGAIIDGPETPGMVGGDTTAAQIRAARLDPK 362 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAA 124 AL++ ++SPGGS A E I + ++ KP++ + MAAS GY IS +N I+++ Sbjct: 363 VKALVLRVNSPGGSVTASELIRSELMALRLAGKPIVVSMGGMAASGGYWISTPANAIISS 422 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 ++L GSIG+ + L+ LGV V +SP+ S + P+ QMMQ ++ Sbjct: 423 ASTLTGSIGIFGVITTFEDSLENLGVHTDGVATSPLADLSITKS-LPPEFSQMMQLSIER 481 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 Y F+ +V+++R ++ ++ G +W G++AK+ GL+D +G ++ + L Sbjct: 482 GYKNFIDIVAQARKKTPEQIDQIAQGHVWVGSDAKENGLVDQIGDFDDAVKKAAELAKL- 540 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 ++ + L ++ S +P+ Q+ + A Sbjct: 541 GQYQLNWYAEQPGLLDTMLNQVNASVY--ALLPVAVQSMLPAPVA 583 Score = 93.5 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 101/280 (36%), Gaps = 38/280 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + F+ + I +++ ++ +Y + E+ + + + G + D Sbjct: 19 LNFIREFILNIFLIALILVGVGIYSQVKTTPEEATKGALLVDLTGVVVDQPTVNNKLRQL 78 Query: 52 ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92 ++++ I + DD+ T +++ LS G+ + I +A+++ Sbjct: 79 GREFFGASNNRRQENSLFDIVDSIRQAKNDDNITGMVLDLSDFTGADQPSLQYIGKALRE 138 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 ++ I V + + Y ++ +N + V G Y K LDKL V+ Sbjct: 139 FRDSGKPIYAVGDSYNQSQYYLASFANTVSLTPQGSVDLHGFATNNLYFKSMLDKLKVTT 198 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203 + K+ P+ +++P A +++ + ++ VS +R I + Sbjct: 199 NIFRVGTYKSAVEPYLRDDMSPAARDADGRWINALWQQYLNTVSANRQITPQQLFPGATN 258 Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 L + T A L+D V + QSL Sbjct: 259 IIAGLQAVQGDTARYALDNKLVDEVASRSVTEQSLVKAFG 298 >gi|239828047|ref|YP_002950671.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. WCH70] gi|239808340|gb|ACS25405.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. WCH70] Length = 336 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 68/274 (24%), Positives = 129/274 (47%), Gaps = 19/274 (6%) Query: 37 HVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYA 82 + + + G I+D Q + IE+ DD+ A+++ ++SPGG Sbjct: 61 KIVVLEVNGVIQDVGDTGALFAAAGYDHQSFLRMIEQAKNDDTVKAIVLRVNSPGGGVVE 120 Query: 83 GEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 I + ++K +KP+ + MAAS GY IS A + I A+ ++ GS+GV+ Q Sbjct: 121 SAEIHDQLLELKKETKKPIYVSMGSMAASGGYYISTAGDKIFASPETITGSLGVIMQSLN 180 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + K GV + ++KS P K +P ++ + +++Q ++ +SY FV+++SE R++P Sbjct: 181 YEGLAKKYGVELVTIKSGPYKDIMNPARKMTEEEKEILQQLIRNSYEGFVKVISEGRHLP 240 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 + ++DGRI+ G +AK++ LID G ++ +L + +K N Sbjct: 241 ESEVRKIADGRIYDGRQAKQLKLIDEFGYLDDTIAALKKDHHLADAQVVKYTNEFSFGSL 300 Query: 261 CDLK---NLSISSLLEDTIPLMKQTKVQGLWAVW 291 + N + + I L+ L ++ Sbjct: 301 FQMAFNQNTTPKHEATELIKLLSNPSSPRLMYLY 334 >gi|298293883|ref|YP_003695822.1| signal peptide peptidase SppA, 36K type [Starkeya novella DSM 506] gi|296930394|gb|ADH91203.1| signal peptide peptidase SppA, 36K type [Starkeya novella DSM 506] Length = 324 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 87/272 (31%), Positives = 146/272 (53%), Gaps = 14/272 (5%) Query: 34 NSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 +SPHVAR+AI G I + +E +E +E I + A A+I+S+ SPGG+ A++ ++++ Sbjct: 52 SSPHVARVAIGGLIRNERERLEMLEDIGK-SGAKAVILSIDSPGGTVVGSAALYDGLRRL 110 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 +KP++ V +AAS Y+ + ++ IVA +LVGSIGV+FQ+P + +GV+ + Sbjct: 111 AEKKPIVAVVDGIAASGAYIAALGADHIVAPRNALVGSIGVIFQFPNFAELMKSVGVAYE 170 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 +KS+P+KA P+ F + +A ++ +V+ SY WF LVSE R + DK SDGR++ Sbjct: 171 EIKSTPLKAAPNMFDPPSEEARAAVRSLVEDSYDWFKGLVSERRLLDGDKLASASDGRVF 230 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK-----------NYWFCD 262 TG +A + LID +G + L ++DW+ + + Sbjct: 231 TGHQALPLRLIDEIGDERTARDWLARERGVSKDLPVRDWHTKRVGDEFGWLRGTSVRLMS 290 Query: 263 LKNLS--ISSLLEDTIPLMKQTKVQGLWAVWN 292 L L + + L Q ++ GL A+W Sbjct: 291 LIGLGDLANLTIGAASDLAMQARLDGLLALWQ 322 >gi|189182992|ref|YP_001936777.1| protease IV [Orientia tsutsugamushi str. Ikeda] gi|189179763|dbj|BAG39543.1| protease IV [Orientia tsutsugamushi str. Ikeda] Length = 302 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 80/288 (27%), Positives = 146/288 (50%), Gaps = 11/288 (3%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVE-----DNSPHVARIAIRGQIEDSQELIERIERISRD 63 K + + L L+T VV F + + V ++A I I I D +L + +I D Sbjct: 20 KWKILTLLLITAIVVLFIFRNRVGYSPSLATGDYIANIQIDDLIYDDIKLNNLLHQIKND 79 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 D A ALI+ + SPGG+ E I+ ++ + N KPV+ + +AAS GYL++ A++ I+A Sbjct: 80 DKAKALILHVDSPGGTVAGSEKIYGILRSISNSKPVVAVLGTVAASGGYLVALAADYIIA 139 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 ++++ GSIG++ P + F +K+G+ + KS +KA PS +V P + +++ Sbjct: 140 QKSTVTGSIGIVHFSPEITEFGEKIGIKFHTFKSGELKAAPSLTEKVTPAVHEATMTLIN 199 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 Y +FV LV+E R + ++ L ++DG+ +TG +A + LID +G E+ L Sbjct: 200 DMYDFFVELVAERRQMSPEQVLKVADGKAYTGRQALSLNLIDALGTTEDALTWLQQEKKL 259 Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 ++ + + + I + L +K+ G+ A++ Sbjct: 260 SLDLRVIELHTQTK------LDSYIELFQNNIRKLFFGSKINGVMALY 301 >gi|86608463|ref|YP_477225.1| signal peptide peptidase SppA, 36K type [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557005|gb|ABD01962.1| signal peptide peptidase SppA, 36K type [Synechococcus sp. JA-2-3B'a(2-13)] Length = 268 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 126/241 (52%), Gaps = 5/241 (2%) Query: 37 HVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 + RI + G I+ + +++ ++ + + A+++ + SPGG+ + I+ A+ +++ Sbjct: 13 QIGRIEVAGAIDGKTRERVLKALKEVEEN-QIPAVVLRIDSPGGTVADSQEIYNALLRLR 71 Query: 95 NRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 +K ++ +AAS G I+ + IVA ++ GSIGV+ + ++ LDK+G+S Sbjct: 72 EKKGTRIVASFGNIAASGGVYIAMGAEKIVANPGTITGSIGVIIRGNNIERLLDKVGISF 131 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 K +KS P K S E+ P+ ++Q+++D +Y FV+ V+ +R + + +DGRI Sbjct: 132 KVIKSGPYKDILSFDRELTPEERNILQELIDITYGQFVQTVAAARKLSLNVVKTFADGRI 191 Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 ++G +A +G++D +G +E+ L + K D P + W L + L Sbjct: 192 FSGEQALHLGVVDRLGTEEDARLWAAELAGLPTDAKFYDLLPRRRGWSRFLPAAEALARL 251 Query: 273 E 273 + Sbjct: 252 Q 252 >gi|123442511|ref|YP_001006488.1| protease 4 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089472|emb|CAL12320.1| protease IV [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 616 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 67/273 (24%), Positives = 123/273 (45%), Gaps = 18/273 (6%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 + +A + G I D L +I + D A+I+ ++SPGGS Sbjct: 317 TPTPQQGEQIAVLFANGAIMDGPQTPGNVGGDVLAAQIRQARLDPKIKAVILRVNSPGGS 376 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + ++ KP++ + MAAS GY IS +N I+A ++L GSIG+ Sbjct: 377 VSASELIRTELAALRAANKPLVVSMGGMAASGGYWISTPANYIIANPSTLTGSIGIFGVI 436 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L+ +GV V +SP+ ++ P+ QMMQ +++ Y F+ LV+ +R+ Sbjct: 437 NTFQNTLESIGVHTDGVATSPLANVSVT-KDLPPEFSQMMQINIENGYKTFIDLVATARH 495 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256 ++ ++ G +W G +AK GL+D +G ++ + + L + + D Sbjct: 496 KTPEQVDQIAQGHVWIGIDAKNNGLVDQLGDFDDAVKKVAELAKLKTWQLNWFVD----- 550 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 DL +S+ ++ +P Q + + Sbjct: 551 EPSLSDLIFGQMSASVQAMLPTAIQAWLPAPIS 583 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 44/293 (15%), Positives = 98/293 (33%), Gaps = 44/293 (15%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIE 55 +Y + S + + + G + D +++E Sbjct: 41 IYLQFQSKPAEPVKGALLVNLSGVVVDQPAVNNKLRQWGRELLGASSNRLQENSLFDIVE 100 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 I D++ T L++SLS G+ + I +A+++ ++ I + E + Y + Sbjct: 101 TIRLAKADNNITGLVLSLSDFTGADQPSLQYIGKALREFRDSGKPIYAIGESYSQTQYYL 160 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172 + +N I + V G Y K L+KL V+ + K+ P +++P Sbjct: 161 ASFANKIYLSPQGTVALHGFASNNLYYKSLLEKLKVTTNIFRVGTYKSAVEPMIRDDMSP 220 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLI 224 A + + + ++ V+ +R + ++ L A L+ Sbjct: 221 AAREADTRWIGGLWQNYLTAVAANRQLTPEQLFPGAAGVVSGLQAAGGSQAQYALSSKLV 280 Query: 225 DVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 D + + E+ L D + I D+ P + + ++ Sbjct: 281 DQLATRPEMENELVKAFGWDKKNNDFNYVSIYDYQPTPTPQQGEQIAVLFANG 333 >gi|332288260|ref|YP_004419112.1| putative protease [Gallibacterium anatis UMN179] gi|330431156|gb|AEC16215.1| putative protease [Gallibacterium anatis UMN179] Length = 619 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 62/274 (22%), Positives = 128/274 (46%), Gaps = 17/274 (6%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVS 72 + S ++A + + G I D + + + + + + + A+++ Sbjct: 309 LYSLPDYETANATSNNIAVLRVEGTIIDGESDDENVGGDTIARLLRQAAENTAVKAVVLR 368 Query: 73 LSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 ++SPGGSA+A E I ++ ++ KPV+ + MAAS GY I+ ++ I+A + ++ GS Sbjct: 369 INSPGGSAFASEVIREEVEHLQQIGKPVVVSMGGMAASGGYWIASTADYIIADKNTITGS 428 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IG+ + ++ L LG+ VK+SP+ + SPF+ ++ + ++Q ++ Y F+ Sbjct: 429 IGIFAAFVTLEKSLANLGIHSDGVKTSPLAS-MSPFTALSQEYSDVIQMSIEHGYDQFIS 487 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL------YALGVDQS 245 LV++ R + + ++ GR+W G +A K L+D +G G+ Sbjct: 488 LVAKGRKLDKSQVDKIAQGRVWLGEDALKYKLVDELGDFNTAIAVASEKIREKEKGLTDD 547 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 + ++ L SS+L+D + + Sbjct: 548 QIGFLWLSEDQSKGLLSLLGQKKSSMLQDLLRSI 581 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 41/326 (12%), Positives = 113/326 (34%), Gaps = 41/326 (12%) Query: 1 MEFVLKKIKTR-YVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQE------ 52 + F+ + + ++ ++ + L + P A R+ + G + D+++ Sbjct: 13 LNFLRRVLMNLAFLFVAGILLFSSTLFVEEQRKQPVPQGALRLNLDGFLADNRDQNSGLK 72 Query: 53 -------------------LIERIERISRDDSATALIVSLSSPGGSAYAGEA-IFRAIQK 92 ++ I + +D+ +++ L+ G I +A+ + Sbjct: 73 ALLNNVQKQVISEKISVFDVVFAITQAKKDERIKGIVLDLNYFEGGDLPSITFIGKALNE 132 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 K + V + + Y+++ ++ I V G+ + Y K LDK+ Sbjct: 133 FKQSGKPVIAVSDNYSQKQYILASYADKIYLHRQGQVELTGLGGEQFYYKSLLDKIDAQP 192 Query: 153 KSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT------ 204 + K+ P +++ A Q +++ ++ VS +R++ ++ Sbjct: 193 HIFRVGTYKSAVEPLLRDDMSEAARQNASQWLNAMWNNIKTTVSNNRHLKQEQIFPSTND 252 Query: 205 --LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + + + A L+ V + ++ +L + NY + Sbjct: 253 FLQQVKNLKGDLTQYALTNKLVTEVATRYQISAALKQQFGADRENNTYQYIDFSNYLYS- 311 Query: 263 LKNLSISSLLEDTIPLM--KQTKVQG 286 L + ++ + I ++ + T + G Sbjct: 312 LPDYETANATSNNIAVLRVEGTIIDG 337 >gi|113954895|ref|YP_731303.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp. CC9311] gi|113882246|gb|ABI47204.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp. CC9311] Length = 258 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 68/259 (26%), Positives = 133/259 (51%), Gaps = 6/259 (2%) Query: 39 ARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 ARIAI G I S + +++ ++ + + AL++ + SPGG+ + I A+ +++ + Sbjct: 2 ARIAIEGAITGSTRRRVLKALKEVQERE-FPALLLRIDSPGGTVGDSQEIHSALLRLREK 60 Query: 97 K-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 V+ ++AS G + A+ IV+ ++ GSIGV+ + + LD++GV ++V Sbjct: 61 GCHVVASFGNISASGGVYVGVAAETIVSNPGTITGSIGVILRGNNLSKLLDRVGVKFETV 120 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215 KS K SP + + +++Q ++DSSY FV V+E R + + +DGR+++G Sbjct: 121 KSGVFKDILSPDRALGAEERELLQALIDSSYEQFVAAVAEGRKLDPSRVREFADGRVFSG 180 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR-KIKDWNPPKNYWFCDLKNLSISSLLED 274 A+AK +GL+D +G +E L R ++ P+ L ++ +++ Sbjct: 181 AQAKDLGLVDELGDEERARVLAAQLADLDEERCRVVTLGKPRKPLLQGLSGSNLLVRIQE 240 Query: 275 TIPLMKQTKVQGLWAVWNP 293 + + + Q LW ++ P Sbjct: 241 LVTVEMELSGQPLW-LFRP 258 >gi|307155357|ref|YP_003890741.1| signal peptide peptidase SppA, 36K type [Cyanothece sp. PCC 7822] gi|306985585|gb|ADN17466.1| signal peptide peptidase SppA, 36K type [Cyanothece sp. PCC 7822] Length = 274 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 68/263 (25%), Positives = 140/263 (53%), Gaps = 6/263 (2%) Query: 34 NSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 S +ARI I G I +++++ ++++ AL++ + SPGG+ + I++A++ Sbjct: 9 TSKQIARIEITGVIASQTRKQVLKALKKVEE-KKYPALLLRIDSPGGTVGDSQEIYQALR 67 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 +++++ ++ ++AS G I + I+A ++ GSIGV+ + ++ LDK+GVS Sbjct: 68 RLQDKVKIVASFGNISASGGVYIGMGAQHIMANPGTITGSIGVIIRGNNLERLLDKIGVS 127 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 K +KS P K S +++ ++Q+++D SY FV+ V++SRN+ + +DGR Sbjct: 128 FKVIKSGPYKDILSFDRDLSAAEQDILQEMIDISYQQFVQTVADSRNLEVETVKTFADGR 187 Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR-KIKDWNPPKNYWFCDLKNLSIS- 269 I+TG +A +G++D +G +E+ + L L ++ + + PK+ L + I+ Sbjct: 188 IFTGEQALNLGVVDRLGSEEDARRWLAELVGLDPLKTECQTIEQPKSLVNRILGSTRIAT 247 Query: 270 -SLLEDTIPLMKQTKVQGLWAVW 291 S L + ++ +W Sbjct: 248 KSRLGGALDWVEFELATNNLPLW 270 >gi|217032126|ref|ZP_03437626.1| hypothetical protein HPB128_16g86 [Helicobacter pylori B128] gi|298735604|ref|YP_003728127.1| protease IV [Helicobacter pylori B8] gi|216946274|gb|EEC24882.1| hypothetical protein HPB128_16g86 [Helicobacter pylori B128] gi|298354791|emb|CBI65663.1| protease IV [Helicobacter pylori B8] Length = 292 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 59/277 (21%), Positives = 133/277 (48%), Gaps = 7/277 (2%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESAPSEPPNLAKLYLNGAIFSTEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + ++ SL+GSIGV+F V+ L+K+GV+ + V + K + P + +Q+ Sbjct: 133 VYVSKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVDDVAKARKLDAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQDRLMEL 252 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 + ++ + F + S S+++ + Sbjct: 253 SKVKKAYWLEKSPMER---FIEKATQSASNIITQALG 286 >gi|217034551|ref|ZP_03439960.1| hypothetical protein HP9810_874g8 [Helicobacter pylori 98-10] gi|216942971|gb|EEC22454.1| hypothetical protein HP9810_874g8 [Helicobacter pylori 98-10] Length = 292 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 127/256 (49%), Gaps = 4/256 (1%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESTPSAPPNLAKLYLNGAIFSTEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P + +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ +A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQNRLMEL 252 Query: 241 GVDQSIRKIKDWNPPK 256 + ++ + Sbjct: 253 SKVKKAYWLEKSPMER 268 >gi|325281704|ref|YP_004254246.1| signal peptide peptidase SppA, 67K type [Odoribacter splanchnicus DSM 20712] gi|324313513|gb|ADY34066.1| signal peptide peptidase SppA, 67K type [Odoribacter splanchnicus DSM 20712] Length = 599 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 125/275 (45%), Gaps = 20/275 (7%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDSQ-------ELIERIERISRDDSATALIVSLSSP 76 +E N +A + G+I Q EL + I +I D++ A+++ ++SP Sbjct: 299 ASVPEVPIEFNKDKIAVVYASGEIGLEQKNNTIGPELAKTIRKIREDNTVKAIVLRVNSP 358 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GGSA + I+R ++ KPVI + +AAS GY ISCA++ IVA T+L GS G+ Sbjct: 359 GGSALTSDIIWREVELATQTKPVIVSMGNVAASGGYYISCAADTIVAEPTTLTGSTGIFG 418 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV---------NPKAVQMMQDVVDSSYH 187 + + ++ V + ++ + P ++Q+ V+ Y Sbjct: 419 MFFSGEKLIEDKMGIHTDVVKTNDHSDFGGSYPLPLPVSNRALTPYERNVLQNYVNQGYE 478 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F+ V R + +D+ ++ GR+WTG +A K+GL+DV+GG E+ + + Sbjct: 479 TFLSRVMSGRGLTHDELHAIAQGRVWTGEDALKIGLVDVLGGLEDAIRIAAQKAGIEK-Y 537 Query: 248 KIKDWNPPKNYWFCDLKNLSI---SSLLEDTIPLM 279 + ++ K+ + + LL++ + Sbjct: 538 NLTEYPVVKSPIEELFAEFTTEVKARLLKEELGTF 572 Score = 95.4 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 54/288 (18%), Positives = 108/288 (37%), Gaps = 39/288 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVY----------FSWSSHVEDNSPHVARIAIRGQIEDS 50 M+ LK V + +V + + + V + + I + G+I D Sbjct: 1 MKSFLKYTLATIVGIMIVHVILFFIFIGFIGAIASFSEKTVTVKNNSILTIKLEGEILDR 60 Query: 51 QE----------------------LIERIERISRDDSATALIVSLSSPG---GSAYAGEA 85 ++ I++ ++D + + L+ G+ + Sbjct: 61 TSDNPLDNIDFLSFTPKKNLGLNKILASIQKAAKDSRIQGIYLDLTEIQGNFGALAFTQE 120 Query: 86 IFRAIQKVKNRKPVITEVHEM-AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I A+QK K I + + Y ++ ++ I + + G+ + K Sbjct: 121 IRNALQKFKESGKFIYSYSNLGYSQKSYYLATVADKIFVNPETPLLLTGMSSSISFYKET 180 Query: 145 LDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L KLG+ + VK K+ PF E++P + +Q +DSS+ V+ ++ESRNIP D Sbjct: 181 LAKLGIQPEVVKVGKFKSAVEPFISDEMSPANREQVQKYLDSSWGTIVKGIAESRNIPVD 240 Query: 203 KTLVLSDG-RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 L++ +T + + G D V ++++ L S + Sbjct: 241 SINALANRFDFYTTRQFQDFGFFDGVLYEDQMLALLKEKCGVGSSDPL 288 >gi|254779946|ref|YP_003058053.1| Signal peptide protease IV (Protease IV) (Endopeptidase IV) [Helicobacter pylori B38] gi|254001859|emb|CAX30109.1| Signal peptide protease IV (Protease IV) (Endopeptidase IV) [Helicobacter pylori B38] Length = 292 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 60/277 (21%), Positives = 133/277 (48%), Gaps = 7/277 (2%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESTPSTPPNLAKLYLNGAIFSTEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P + +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQDRLMEL 252 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 + ++ + F + S S+++ Sbjct: 253 SKVKKAYWLEKSPMER---FIEKATQSASNIITQAFG 286 >gi|239501011|ref|ZP_04660321.1| signal peptide peptidase SppA, 36K type [Acinetobacter baumannii AB900] Length = 338 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 67/297 (22%), Positives = 132/297 (44%), Gaps = 18/297 (6%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQI-------EDSQELI 54 K + Y++ +V + + S +S H+A + I G I +S++ Sbjct: 45 FFKTLTFIYLLFIIVLMGKGCSTTKDGSTASSSSAHLAVVDIIGTIDASSNQAVNSEDTN 104 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAG 111 + ++R ++ A+ ++++SPGGS + I++ I+ + K V + +M AS Sbjct: 105 KALKRAFEASNSKAIALNINSPGGSPVQSDEIWQEIRYLKKEHPDKKVYAVIGDMGASGA 164 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I+ +SLVGSIGV+ + KLG+ +++ + K S +N Sbjct: 165 YYIASAADEIIVNPSSLVGSIGVIMPNYGITGLAQKLGIEDRTLTAGANKDILSMTKPIN 224 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQ 230 P Q +Q V+D+ + F+ V E R + G WTG +A ++G+ D G Sbjct: 225 PVQRQHIQSVLDNVHTHFINAVKEGRGKRLKTNDPAIFSGLFWTGEQAIQLGVADRSGNI 284 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYW--FCDLKNLSISSLLEDTIPLMKQTKVQ 285 + + L +D + + NP ++ +S + + + + K+Q Sbjct: 285 TSLMRELK---LDNKVDYTIERNPLQSILGRMGSEMGKGLSESVAERLQTSQDAKLQ 338 >gi|169632699|ref|YP_001706435.1| putative protease; signal peptide peptidase sppA [Acinetobacter baumannii SDF] gi|169795044|ref|YP_001712837.1| putative protease; signal peptide peptidase sppA [Acinetobacter baumannii AYE] gi|213158294|ref|YP_002320345.1| signal peptide peptidase SppA, 36K type [Acinetobacter baumannii AB0057] gi|215482593|ref|YP_002324785.1| signal peptide peptidase SppA, 36K type [Acinetobacter baumannii AB307-0294] gi|301348285|ref|ZP_07229026.1| signal peptide peptidase SppA, 36K type [Acinetobacter baumannii AB056] gi|301512406|ref|ZP_07237643.1| signal peptide peptidase SppA, 36K type [Acinetobacter baumannii AB058] gi|301596270|ref|ZP_07241278.1| signal peptide peptidase SppA, 36K type [Acinetobacter baumannii AB059] gi|169147971|emb|CAM85834.1| putative protease; signal peptide peptidase sppA [Acinetobacter baumannii AYE] gi|169151491|emb|CAP00252.1| putative protease; signal peptide peptidase sppA [Acinetobacter baumannii] gi|213057454|gb|ACJ42356.1| signal peptide peptidase SppA, 36K type [Acinetobacter baumannii AB0057] gi|213987631|gb|ACJ57930.1| signal peptide peptidase SppA, 36K type [Acinetobacter baumannii AB307-0294] gi|323519116|gb|ADX93497.1| periplasmic serine protease (ClpP class) [Acinetobacter baumannii TCDC-AB0715] Length = 338 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 67/297 (22%), Positives = 132/297 (44%), Gaps = 18/297 (6%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQI-------EDSQELI 54 K + Y++ +V + + S +S H+A + I G I +S++ Sbjct: 45 FFKTLTFIYLLFIIVLMGKGCSTTKDGSTASSSSAHLAVVDIIGTIDASSNQAVNSEDTN 104 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAG 111 + ++R ++ A+ ++++SPGGS + I++ I+ + K V + +M AS Sbjct: 105 KALKRAFEASNSKAIALNINSPGGSPVQSDEIWQEIRYLKKEHPDKKVYAVIGDMGASGA 164 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I+ +SLVGSIGV+ + KLG+ +++ + K S +N Sbjct: 165 YYIASAADEIIVNPSSLVGSIGVIMPNYGITGLAQKLGIEDRTLTAGTNKDILSMTKPIN 224 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQ 230 P Q +Q V+D+ + F+ V E R + G WTG +A ++G+ D G Sbjct: 225 PVQRQHIQSVLDNVHTHFINAVKEGRGKRLKTNDPAIFSGLFWTGEQAIQLGVADRSGNI 284 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYW--FCDLKNLSISSLLEDTIPLMKQTKVQ 285 + + L +D + + NP ++ +S + + + + K+Q Sbjct: 285 TSLMRELK---LDNKVDYTIERNPLQSILGRMGSEMGKGLSESVAERLQTSQDAKLQ 338 >gi|171463178|ref|YP_001797291.1| peptidase S49 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192716|gb|ACB43677.1| peptidase S49 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 313 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 71/281 (25%), Positives = 127/281 (45%), Gaps = 16/281 (5%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVED--NSPHVARIAIRGQIEDSQ-----ELIERIE 58 K + +L +V++ + F + + H A + + G+I S ++ + Sbjct: 32 KAVLRVLTLLVIVSVLLSIFDFHLPGKGMGVEKHTALVTLEGEISSSSMANAMDINSSLL 91 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAGYLIS 115 ++ + +++ ++SPGG I I +K+ KP V ++ AS GY ++ Sbjct: 92 SAFENEHSVGVVLRINSPGGFPVQAGMINDEIHRLRKLYPSKPFYVVVEDICASGGYYVA 151 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 AS+ I+ + SLVGSIGV+ + +DKLGV+ + + S K PFS+ NPK V Sbjct: 152 VASDQILVDKASLVGSIGVIMEGFGFTGLMDKLGVTRRMITSGSNKGMLDPFSKENPKQV 211 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 +M++ ++D + F+ +V E R L GRIW G +A K+GL D G + V + Sbjct: 212 EMVKTMIDEIHQQFIAVVKEGRGDRLKDMPDLFSGRIWNGEQAVKIGLADGYGTVDTVAR 271 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 + I D+ +N+ K + + Sbjct: 272 DILK------APDILDYTMKENFAERVAKRFGAEAAAGKAL 306 >gi|282899429|ref|ZP_06307396.1| Peptidase S49, protease IV [Cylindrospermopsis raciborskii CS-505] gi|281195693|gb|EFA70623.1| Peptidase S49, protease IV [Cylindrospermopsis raciborskii CS-505] Length = 607 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 64/266 (24%), Positives = 122/266 (45%), Gaps = 10/266 (3%) Query: 18 VTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSAT 67 + + S +++ +A + G+I D + + + +I +D Sbjct: 296 IGIGDYLQASEIKEQQNSQNKIAVVYAEGEIVDGEGESSQIGGDRYAKVLRKIRQDQDIK 355 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 ++++ ++SPGGSA A E I R IQ K KPVI + ++AAS GY I+ S+ I A + Sbjct: 356 SVVLRINSPGGSATASEIIEREIQLTKQVKPVIVSMGDVAASGGYWIASNSDHIFAEPGT 415 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIGV + + G++ +VK+S + +P+ + + Q V+ Y+ Sbjct: 416 LTGSIGVFGVLLNGQKLANNNGITWDTVKTSEFADSQTVSRPKSPQELAIYQRSVNRIYN 475 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F+ V + R +P K ++ GR+W+GA AK++GL+D +GG + Sbjct: 476 MFINKVVQGRKLPETKVGEIAQGRVWSGATAKQIGLVDEIGGLNIAIEYAAKKAKLGKDW 535 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLE 273 +++++ +++ Sbjct: 536 QVEEYPEVTTLGERFFGKKLEEAIIG 561 Score = 93.9 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 42/243 (17%), Positives = 94/243 (38%), Gaps = 7/243 (2%) Query: 51 QELIERIERISRDDSATALIVSLSSPG----GSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 ++LI +E+ + D + + +S + I +A++K + I Sbjct: 87 RQLIGALEQAAEDQRIAGIYIDVSESSKVSSLGYASLREIRQALEKFRASGKKIIAYGVG 146 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + Y +S ++ I ++ G+ Q ++ L+K G+ ++ V+ K P Sbjct: 147 WSEREYYLSSVADKIFLNPVGMMEINGLSSQPIFLTGALEKYGIGVQVVRVGKFKGAVEP 206 Query: 167 F--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL-SDGRIWTGAEAKKVGL 223 +++P+ + Q ++D + + V +SR I + + ++ + +AK GL Sbjct: 207 LVLDKLSPENREQTQQLLDDLWGEWRNSVGKSRKISPEILQEIANNQGVLEAKDAKNNGL 266 Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 ID V ++V L +G + K +Y +S + + + Sbjct: 267 IDEVAYTDQVVADLKKIGTSDNDGKSFRQIGIGDYLQASEIKEQQNSQNKIAVVYAEGEI 326 Query: 284 VQG 286 V G Sbjct: 327 VDG 329 >gi|15646044|ref|NP_208226.1| protease IV (PspA) [Helicobacter pylori 26695] gi|2314611|gb|AAD08477.1| protease IV (PspA) [Helicobacter pylori 26695] Length = 292 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 126/256 (49%), Gaps = 4/256 (1%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESAPSAPPNLAKLYLNGAIFSTEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKDFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ +A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQDRLMEL 252 Query: 241 GVDQSIRKIKDWNPPK 256 + ++ + Sbjct: 253 SKVKKAYWLEKSPMER 268 >gi|254468276|ref|ZP_05081682.1| peptidase S49 [beta proteobacterium KB13] gi|207087086|gb|EDZ64369.1| peptidase S49 [beta proteobacterium KB13] Length = 316 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 66/283 (23%), Positives = 125/283 (44%), Gaps = 15/283 (5%) Query: 6 KKIKTRYVMLSLVTLTVVYFSW----SSHVEDNSPHVARIAIRGQIEDSQEL-----IER 56 ++ + +++ + L ++ F + V + A + + G I E+ I+ Sbjct: 30 RRWSNFFKIVTFLYLFILLFIFLGKPGDQVSASGEFTALVKLNGIISSESEINAEDAIKS 89 Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYL 113 +++ ++D LIVS++SPGGS I I+++ KP+ V ++ AS GY Sbjct: 90 LQKAMKNDGTKGLIVSINSPGGSPVQSAMINDEIKRLKLIYPEKPIKVVVEDVCASGGYF 149 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 I+ A++ I A ++S+VGSIGVL ++KLG+ + + + K PF ++P Sbjct: 150 IAVAADDIYANKSSIVGSIGVLMNGFGFDQAIEKLGIERRLMTAGKNKGILDPFQPIDPT 209 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 + +Q ++D + F+ V E R + + G W G A K+GLID G + Sbjct: 210 HRKHVQQLLDEVHQQFITAVKEGRGDRLSEDQSIFSGLFWNGESAYKLGLIDGFGTVSSI 269 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 + + + + + + + L S L I Sbjct: 270 AKDVI---GYEKVIDFTTYETFADRFAKKLGAGIGSVLHSQVI 309 >gi|167645285|ref|YP_001682948.1| signal peptide peptidase SppA, 67K type [Caulobacter sp. K31] gi|167347715|gb|ABZ70450.1| signal peptide peptidase SppA, 67K type [Caulobacter sp. K31] Length = 595 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 72/288 (25%), Positives = 116/288 (40%), Gaps = 18/288 (6%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED----------------SQELIERIERI 60 L+ P +A ++ G I S ++ + + Sbjct: 278 LIDFDDYVSRAKRAPIKTGPTIAVVSAEGAIMTGSGSGGSPFGGDSTIYSDQVSKALYDA 337 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASN 119 D A++ +SSPGGS A E I A++ + KPV+ + AAS GY IS ++ Sbjct: 338 IDDKDVKAIVFRVSSPGGSDTASEQILAAVKAARKAGKPVVVSMGTYAASGGYWISSGAS 397 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-PMKAEPSPFSEVNPKAVQMM 178 IVA T+L GSIGV + L + GV + V P Sbjct: 398 AIVAEPTTLTGSIGVFGGKFALGEALARFGVDTRQVHVGGDYAGAFGTGEGFTPDQRAKF 457 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 +D Y FV V+E R++P ++ ++ GR+WTG +AK++GL+D +GG E + Sbjct: 458 SAWMDRIYAGFVGRVAEGRHLPPERVREIAKGRVWTGVQAKQLGLVDELGGFYEAVEKAK 517 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 +L + K+K + + K L +SS T+ Sbjct: 518 SLAGLKGEVKLKKIGASNSPFDALEKVLGVSSASMRTLAASAWLLGDP 565 Score = 83.1 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 100/259 (38%), Gaps = 29/259 (11%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRGQIEDSQE---------------- 52 ++L LV + + ++ +P V ++ +RG + D + Sbjct: 15 LVLFLVGVPFLLIVMAASATRPAPVPAHTVLQLDLRGGLSDQESQNPFAAFSGGGGQSVM 74 Query: 53 -LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASA 110 ++E + R D+ A++V L G + + + + A + + K I + + Sbjct: 75 SIVETLRRAETDEKVKAVLVRLPEGGMAPASADELRLAFKHFRAVGKKPIFAHSQGLYPS 134 Query: 111 -----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 Y++ A++ S + ++G + + K F DK GV + + K + Sbjct: 135 GLVTSTYMLGAAASEFWMQPDSSLQAVGAASEEMFFKRFFDKYGVKAEYEQRYEYKNAVN 194 Query: 166 PF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 P+ S+ P + + S Y + ++ R + + + ++ EAK GL Sbjct: 195 PYLYSDYTPAHRESTLSWMGSVYTSALTTAAQDRKVDPAALVKTIEAGPYSAEEAKAKGL 254 Query: 224 IDVVGGQEEVWQSLYALGV 242 ID VG +EV ++ + Sbjct: 255 IDRVGQVKEVQDAMLSRAG 273 >gi|296102810|ref|YP_003612956.1| protease 4 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057269|gb|ADF62007.1| protease 4 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 618 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 74/273 (27%), Positives = 128/273 (46%), Gaps = 14/273 (5%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPG 77 + +++ VA + G I D QE +I D A+++ ++SPG Sbjct: 317 AAKKPDESGDSVAVVFANGAIMDGQETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPG 376 Query: 78 GSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GS A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 377 GSVSASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFG 436 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 V+ LD LGV V +SP+ S + P+ +MMQ +++ Y F+ LV++S Sbjct: 437 VINTVENSLDYLGVHTDGVATSPLADVSVTKS-LPPEVSEMMQLSIENGYKRFITLVADS 495 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R + ++ G +WTG +AK GL+D +G ++ + L ++ + Sbjct: 496 RKKTPQQIDEIAQGHVWTGQDAKSNGLVDSLGDFDDAVKKAAELAKL-KQWHVEYYQDEP 554 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 +++ + ++S+S + +P Q + A Sbjct: 555 SFFDMVMDSMSVS--VRAMLPEALQAYLPAPVA 585 Score = 98.1 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 47/288 (16%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKTR-YVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + +++L LV + S ++ + ++ + I G I D Sbjct: 19 LNFVRNLVMNLVFILLVLVCAGIWMHISNANQSQHSTRGALLLDITGVIVDKPSTSNRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 ++++ I + D + T +++ L G+ + I +A+ Sbjct: 79 VIGRQLFGATSDRLQENSLFDIVDTIRQAKDDRNITGIVLDLKDFAGADQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + + + + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPVIAIGDSYSQGQYYLASFANKIWLSPQGTVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 + + K+ PF +++P A + + + ++ V+ +R I + Sbjct: 199 TTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLTTVASNRQITPAQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L T A L+D +G E+ +SL K Sbjct: 259 QGVLDGLRKVDGDTAKYALDNKLVDALGTSAEIEKSLSKQFGWSKEDK 306 >gi|27228584|ref|NP_758634.1| putative peptidase [Pseudomonas resinovorans] gi|219857006|ref|YP_002474038.1| probable peptidase [Pseudomonas sp. CA10] Length = 349 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 72/296 (24%), Positives = 132/296 (44%), Gaps = 24/296 (8%) Query: 6 KKIKTRY----VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIER 56 ++ K + + + + V + V + P A+I +RG I D +E L Sbjct: 61 RRWKNFFRLATLGIVVTAFVVGGRADLDGVGADVPVTAKIKVRGVIADGEEASAENLKRS 120 Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYL 113 + + +++ A+I+ ++SPGGS ++ ++++ V + ++ AS GY Sbjct: 121 LGKAFENENTKAVILEINSPGGSPVQAGHVYDEVRRLRALHPDTKVYAVITDLGASGGYY 180 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 I+ A++ I A + SLVGSIGV + KLGV ++ S KA F NP+ Sbjct: 181 IASAADEIFADKASLVGSIGVTAASFGYVELMQKLGVERRAYTSGEHKAFLDQFQPQNPE 240 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + + V+ ++++ F+R V R + L G IWTG +A +GL+D +G + Sbjct: 241 ERKFWEGVLKTTHNQFIRSVEAGRGDRLKAKENPDLYSGLIWTGEQAVGLGLVDRLGDSD 300 Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 V + + + KI D+ +N + S + D + L + GL Sbjct: 301 YVAREVVG------VSKIVDFTRKQNPLDRFASKIGAS--VADQLSL--RLGFDGL 346 >gi|315585821|gb|ADU40202.1| signal peptide peptidase SppA [Helicobacter pylori 35A] Length = 292 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 127/256 (49%), Gaps = 4/256 (1%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESAPSAPPNLAKLYLNGAIFSTEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P + +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ +A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQNRLMEL 252 Query: 241 GVDQSIRKIKDWNPPK 256 + ++ + Sbjct: 253 SKVKKAYWLEKSPMER 268 >gi|295398025|ref|ZP_06808081.1| U7 family peptidase [Aerococcus viridans ATCC 11563] gi|294973783|gb|EFG49554.1| U7 family peptidase [Aerococcus viridans ATCC 11563] Length = 362 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 69/257 (26%), Positives = 124/257 (48%), Gaps = 14/257 (5%) Query: 30 HVEDNSPHVARIAIRGQIEDS------------QELIERIERISRDDSATALIVSLSSPG 77 D + VA + I G I D+ Q +++ IE I +D+ AL+++++SPG Sbjct: 71 ETGDTNRQVAVLEIDGTIADNSGSGAFSEGMDYQGILDAIEGIKENDNIQALLLTVNSPG 130 Query: 78 GSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 G Y ++ A+ +K P+ + +MAAS GY+IS + I + GSIGV+ Sbjct: 131 GGVYESTELYNALLDLKESREIPIYVSMGQMAASGGYMISMVGDQIYTDSETTTGSIGVI 190 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 Q P F+++ G+++ + KS +K S F + + ++ + Y+ FV +V+ Sbjct: 191 MQVPNFSGFMEEHGLAMDTYKSGALKDMGSSFRGASDEEKNVLNSFIQEKYNRFVEIVAN 250 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 R + D L+DGRI++G++A + GL D +G +E+ +L A ++ + Sbjct: 251 GRGMSTDDVKKLADGRIYSGSQAVENGLADQIGYEEDALAALRADNNLETATVVDYSPTS 310 Query: 256 KNYWFCDLKNLSISSLL 272 W D +L L Sbjct: 311 ATSWLTDFMSLLAEKNL 327 >gi|317488446|ref|ZP_07946999.1| signal peptide peptidase SppA [Eggerthella sp. 1_3_56FAA] gi|316912490|gb|EFV34046.1| signal peptide peptidase SppA [Eggerthella sp. 1_3_56FAA] Length = 369 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 64/264 (24%), Positives = 116/264 (43%), Gaps = 8/264 (3%) Query: 34 NSPHVARIAIRGQI------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 V I I G I + L +++R ++ A+++ ++S GG+A AGE + Sbjct: 105 TGDAVGVIDIDGTIQYDNTTSSPEGLKAQLDRAEKNSHIKAVVLRVNSGGGTATAGEEMA 164 Query: 88 RAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 ++ R KPV+ + ASA Y IS ++ I A+T+ +G+IG + Q + + Sbjct: 165 DYVRGFSERTGKPVVVSSASVNASAAYEISSQADYIYTAKTTAIGAIGTVMQVTDLSGLM 224 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 +KLG+S+ +V S+ K + + QD VD F++ V+E R++P + Sbjct: 225 EKLGISVDNVTSADSKDSSYGTRPLTEEERAYYQDQVDQINETFIQTVAEGRDMPVEDVR 284 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L+ G +TG A + GL D +G +++ L + NP + Sbjct: 285 ALATGLTFTGMTAVENGLADEIGTKDDAVAKAAELANIAHYTTVTLKNPTSSLSSLLDLM 344 Query: 266 LSISSLLEDTIPLMKQTKVQGLWA 289 + +D +K+ G A Sbjct: 345 SKSNVSTDDIARALKELDTDGSIA 368 >gi|282897594|ref|ZP_06305594.1| Peptidase S49, protease IV [Raphidiopsis brookii D9] gi|281197517|gb|EFA72413.1| Peptidase S49, protease IV [Raphidiopsis brookii D9] Length = 607 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 65/260 (25%), Positives = 120/260 (46%), Gaps = 9/260 (3%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSL 73 V S +++ +A + G+I D + + +I +D ++++ + Sbjct: 302 VQASEIEEQQNSQNKIAVVYAEGEIVDGEGESSQIGGDRYARILRKIRQDQDIKSVVLRV 361 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 +SPGGSA A E I R IQ K KPVI + ++AAS GY I+ S+ I A +L GSIG Sbjct: 362 NSPGGSATASEIIEREIQLTKQVKPVIVSMGDIAASGGYWIASNSDHIFAEPGTLTGSIG 421 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V + + G++ +VK+S + +P+ + + Q V+ Y+ F+ V Sbjct: 422 VFGVLLNGQKLANNNGITWDTVKTSEFADSQTVSRPKSPQELAIYQRSVNRIYNMFINKV 481 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 + R +P K ++ GR+W+GA AK++GL+D +GG + +++++ Sbjct: 482 VQGRKLPETKVGEIAQGRVWSGATAKEIGLVDEIGGLNMAIEYAAKKAKLGKDWQVEEYP 541 Query: 254 PPKNYWFCDLKNLSISSLLE 273 +++ Sbjct: 542 EVTTLGERFFGRKLEETIIG 561 Score = 92.0 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 95/243 (39%), Gaps = 7/243 (2%) Query: 51 QELIERIERISRDDSATALIVSLSSPG----GSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 ++LI +E+ + D + +++S + I +A++K + I Sbjct: 87 RQLIGALEQAAEDQRIVGIYINVSESSKVSSLGYASLREIRQALEKFRASGKKIIAYGVG 146 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + Y +S +N I ++ G+ Q ++ L K G+ ++ V+ K P Sbjct: 147 WSEREYYLSSVANKIFLNPVGMIEINGLSSQPIFLTGALQKYGIGVQVVRVGKFKGAVEP 206 Query: 167 F--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL-SDGRIWTGAEAKKVGL 223 +++P+ + Q ++D + + V +SR I + + ++ + +AK GL Sbjct: 207 LVLDKLSPENREQTQQLLDDLWGEWRNSVGKSRKISPEILQEIANNQGVLEAKDAKDNGL 266 Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 ID V ++V L +G + K P +Y +S + + + Sbjct: 267 IDEVAYTDQVVADLKTIGTSDNDGKSFRQIPIGDYVQASEIEEQQNSQNKIAVVYAEGEI 326 Query: 284 VQG 286 V G Sbjct: 327 VDG 329 >gi|261840109|gb|ACX99874.1| protease IV, 36K short form [Helicobacter pylori 52] Length = 292 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 58/256 (22%), Positives = 128/256 (50%), Gaps = 4/256 (1%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS V P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESVPSEPPNLAKLYLNGAIFSTEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P + +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ +A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQNRLMEL 252 Query: 241 GVDQSIRKIKDWNPPK 256 + ++ + Sbjct: 253 SKVKKAYWLEKSPMER 268 >gi|116873014|ref|YP_849795.1| protease/peptidase protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741892|emb|CAK21016.1| protease/peptidase protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 338 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 69/274 (25%), Positives = 134/274 (48%), Gaps = 19/274 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76 + +A +++ G I+D+ E ++++E++ D+S +++ ++SP Sbjct: 57 EDAGPNKIAVLSVDGTIQDTGETSSIFGSEGYNHSFFMDQLEQVRDDESIKGVLLYVNSP 116 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG I I +++ + P + MAAS GY IS ++ I A++ +L GS+GV Sbjct: 117 GGGVMESAQIRDKILQIQKERSIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 176 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + Q + KLG+S ++KS K S + + ++MQ ++D SY+ FV++V+ Sbjct: 177 IMQGYDYSELMKKLGISDNTIKSGAHKDIMSATRPMTEEEKKIMQSMIDDSYNEFVKVVA 236 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 R++ ++ ++DGRI+ G +AK+ GLID G QE+ ++L + I+ P Sbjct: 237 SGRDMSEEQVRKIADGRIYDGRQAKENGLIDAFGYQEDALEALKKEKKLSNASVIQYDEP 296 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 F L + + + + + K+ G Sbjct: 297 TG---FSSLFSATAQKITGQNTDITQLIKLTGTL 327 >gi|308062696|gb|ADO04584.1| protease IV (PspA) [Helicobacter pylori Cuz20] Length = 292 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 58/256 (22%), Positives = 126/256 (49%), Gaps = 4/256 (1%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESTPSEPPNLAKLYLNGAIFSAEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y +N Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQANE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P + +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQNRLMEL 252 Query: 241 GVDQSIRKIKDWNPPK 256 + ++ + Sbjct: 253 SKVKKAYWLEKSPMER 268 >gi|108563786|ref|YP_628102.1| signal peptide protease IV [Helicobacter pylori HPAG1] gi|107837559|gb|ABF85428.1| signal peptide protease IV [Helicobacter pylori HPAG1] Length = 292 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 60/277 (21%), Positives = 133/277 (48%), Gaps = 7/277 (2%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I + + + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESAPSAPPNLAKLYLNGAIFSTDDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P + +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ +A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQNRLMEL 252 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 + ++ + F + S S+++ Sbjct: 253 SKVKKAYWLEKSPMER---FIEKATQSASNIITQAFG 286 >gi|16331410|ref|NP_442138.1| protease IV [Synechocystis sp. PCC 6803] gi|2499885|sp|Q55682|Y021_SYNY3 RecName: Full=Putative protease slr0021 gi|1001581|dbj|BAA10208.1| protease IV [Synechocystis sp. PCC 6803] Length = 277 Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 69/256 (26%), Positives = 125/256 (48%), Gaps = 4/256 (1%) Query: 31 VEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 +ARI + G I + +++ ++ + AL+V + SPGG+ + I+ Sbjct: 6 KTSTRKKIARIEVTGAIASGTRKAVLKALKTVEE-KKYPALLVRIDSPGGTVVDSQEIYT 64 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 ++++ + V+ ++AS G I+ I+A ++ GSIGV+ + ++ L+K+ Sbjct: 65 KLKQLSEKIKVVASFGNISASGGVYIAMGCPHIMANSGTITGSIGVILRGNNLERLLEKV 124 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 GVS K +KS P K S E+ P+ ++Q ++D SY FV V+ RN+ +K + Sbjct: 125 GVSFKVIKSGPYKDILSFDRELLPEEQSILQALIDDSYGQFVSTVAAGRNLAVEKVKEFA 184 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLKNLS 267 DGRI+TG +A ++GL+D +G +E+ Q L D ++ PK S Sbjct: 185 DGRIFTGQQALELGLVDRLGTEEDARQWAATLAGLDPDKVELDTIEDPKPLVRRLTGGDS 244 Query: 268 ISSLLEDTIPLMKQTK 283 + D + L + K Sbjct: 245 QLQTMADNLGLTESLK 260 >gi|193212213|ref|YP_001998166.1| signal peptide peptidase SppA, 67K type [Chlorobaculum parvum NCIB 8327] gi|193085690|gb|ACF10966.1| signal peptide peptidase SppA, 67K type [Chlorobaculum parvum NCIB 8327] Length = 578 Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 62/302 (20%), Positives = 121/302 (40%), Gaps = 14/302 (4%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------- 51 K+ + L + + + + +A I I G I Sbjct: 248 RKRFGKPFDELVVNAGSYLSSTGDLEPHGTGNRIAVITINGLIVGDSIAGMGDDEEIDVA 307 Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 + ++ D A+++ + SPGG A A ++ +++ +KP++ + AAS G Sbjct: 308 SVRRAVDAALDDSKVKAIVLRIDSPGGEALAASSMLELLEEAAQKKPLVASMSGSAASGG 367 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y+++ A+N I A ++ GSIGV P L+K G+ + + +PF + Sbjct: 368 YMVALAANKIYAQPLTVTGSIGVFALKPDFSGLLEKTGIHREVLTRGRFADAYTPFKPFD 427 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 A + + Y F V++SR++ ++ ++ GR+W+G A +VGL+D +GG Sbjct: 428 DAAFRKFVETTGHIYEDFTGKVAKSRHLTAEQVEAVAGGRVWSGKRAVEVGLVDEIGGLN 487 Query: 232 EVWQSLYALGVDQSIRKIKD-WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + Q L + K + + P + W + + D + + L V Sbjct: 488 DAVQEASRLAKLKKGTKPEMLYLPARKTWIERFFDGDAVQAVADMSDHLATQSLARLLPV 547 Query: 291 WN 292 Sbjct: 548 SQ 549 Score = 88.5 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 106/260 (40%), Gaps = 21/260 (8%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE------------------DSQELI 54 V+L ++ + V+ + S + V R+ ++GQIE + L+ Sbjct: 2 VVLFVLLIGGVWLASSWSDKLPERFVLRVPVKGQIEERSPDSGLFSFGQRAEPLSLEALM 61 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 ++R D ++++ + S + + +I ++ +T + A YL+ Sbjct: 62 TILDRAQSDKRVESVLLDIDGLSTSTAKIQELSSSIDALRKSGKKVTALLRTPADKDYLL 121 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172 + A + I+ + S + G + + L KLG+ ++ + K+ P+ + +P Sbjct: 122 AVACDSIIVQKNSWMQLDGFKAELFFFAEPLKKLGIGFQAAQWKKYKSAIEPYTRNSPSP 181 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGGQE 231 +++Q + ++D S+ ++ V+ R+I D + D + T +A + LID V Sbjct: 182 ESLQELNSLLDDSWANYLDQVARRRHIGRDAFREVIDSLAVLTPEQALERKLIDRVLSIR 241 Query: 232 EVWQSLYALGVDQSIRKIKD 251 ++ + + + Sbjct: 242 QLEKEYRKRFGKPFDELVVN 261 >gi|221068706|ref|ZP_03544811.1| peptidase S49 [Comamonas testosteroni KF-1] gi|220713729|gb|EED69097.1| peptidase S49 [Comamonas testosteroni KF-1] Length = 348 Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 59/264 (22%), Positives = 116/264 (43%), Gaps = 7/264 (2%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISRDDSATALIVSLSSPGG 78 +F ++ SPH A + I+G+I + ++ + D + A+++ ++SPGG Sbjct: 85 FFKDTATKTSTSPHTAVVEIKGEIASGADASAEFVVAAMRSAFEDSGSRAVVLLINSPGG 144 Query: 79 SAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 S I + ++K + KP+ V E ASA Y I+ A++ I + S+VGSIGVL Sbjct: 145 SPVQAGIINDEMTRLKAKYNKPLYAVVEESCASAAYYIAAAADEIFVDKASIVGSIGVLM 204 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 +DK+GV + + + K PFS ++ + + +++ + F+ +V Sbjct: 205 DGFGFTGVMDKVGVERRLLTAGENKGFLDPFSPMSSQQKEFALQMLEQIHQQFIGVVKAG 264 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R ++ + G WTG +A ++GL D +G + V + + + + Sbjct: 265 RGDRLHESPEMFSGLFWTGQQAVELGLADKLGSLDYVAREVVKAEEVIDYTRRDNVAERL 324 Query: 257 NYWFCDLKNLSISSLLEDTIPLMK 280 F + +P ++ Sbjct: 325 AKRFGAAIGEGSVKAMRGLMPSIR 348 >gi|307130936|ref|YP_003882952.1| protease IV (signal peptide peptidase) [Dickeya dadantii 3937] gi|306528465|gb|ADM98395.1| protease IV (signal peptide peptidase) [Dickeya dadantii 3937] Length = 616 Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 70/280 (25%), Positives = 121/280 (43%), Gaps = 14/280 (5%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALI 70 T +Y + N+ +A + G I D +I D A++ Sbjct: 308 FTSIYDYAPTPPAANANEIAVVFASGTIVDGKETPGYVGGDTTAAQIRDARLDPKVKAIV 367 Query: 71 VSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + ++SPGGS A E I + + KPV+ + MAAS GY IS +N I+A+ ++L Sbjct: 368 LRVNSPGGSVTASELIRSELAAARQAGKPVVVSMGGMAASGGYWISTPANAIIASPSTLT 427 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIG+ + LD +GV V +SP+ A + + +MQ ++ Y F Sbjct: 428 GSIGIFGVVTTFENSLDSIGVHTDGVATSPLAALSQTKALPTEASQ-LMQLNIERGYQNF 486 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 + LV+ESR + ++ G +W G++AK GL+D +G ++ + L ++ Sbjct: 487 ISLVAESRKKTPQEVDEIAQGHVWVGSDAKTNGLVDQLGDFDDAVKKAAELAKL-EHYQL 545 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 ++ + D + S + +P Q V A Sbjct: 546 SWYSGEPDLL--DAMFNQVRSSVYAMLPSALQAMVPAPVA 583 Score = 93.1 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 46/298 (15%), Positives = 104/298 (34%), Gaps = 44/298 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + F+ + I +++ ++ VY + + + + + G + D Sbjct: 19 LNFIREFILNLFLVFLILVGIGVYSQFKTPQAEPVRGALLLDLTGVVVDKPSVNNKLRQF 78 Query: 52 ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92 ++++ I + D + T +++ LS + + I +A+++ Sbjct: 79 GREFFGVSGSRHQENALFDIVDSIRQAKDDSNITGMVMDLSDFVSADQPSLQYIGKALRE 138 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 ++ I V + Y ++ +N I + G Y K LDKL V+ Sbjct: 139 FRDAGKPIFAVGDNFNQTQYYLASFANKIYLTPQGNIDLHGFATNNLYYKTLLDKLKVTT 198 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT----LV 206 + K+ PF +++P A + + + + ++ V+ +R I + Sbjct: 199 HIFRVGTYKSAVEPFIRDDMSPAAREADSRWISTLWQHYLDTVAANRQITPQQLFPGAEN 258 Query: 207 LSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYA------LGVDQSIRKIKDWNP 254 L G T A + L+D V + + QS + + I D+ P Sbjct: 259 LLAGLRALNGDTARYALENKLVDEVASRSVIEQSFIKAFGWDAKNKNFNFTSIYDYAP 316 >gi|218888246|ref|YP_002437567.1| signal peptide peptidase SppA, 36K type [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218759200|gb|ACL10099.1| signal peptide peptidase SppA, 36K type [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 335 Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 67/289 (23%), Positives = 113/289 (39%), Gaps = 20/289 (6%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIV 71 F + I + G I++ QE++ ++ + D A+IV Sbjct: 43 FGEDTVFGQGRNKAVLINVNGVIDNRPKSGLFRERPGMVQEVVAQLRLAAEDPDVKAVIV 102 Query: 72 SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG--YLISCASNIIVAAETSLV 129 ++ SPGG A + ++ + + + R M +A Y + A++ IVA +++ Sbjct: 103 AIDSPGGGVTASDVLYHELMRHRERTGQKVVALMMDTAASGGYYTALAADRIVAHPSTVT 162 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+F P V +DK+GV KS K SPF E + + Q ++ F Sbjct: 163 GSIGVIFLRPEVAGLMDKIGVRAVVSKSGEHKDMGSPFREGTDEERALFQSIIADMNGRF 222 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 LV E R + +D RI T +A GL+D +G E+ +L +R + Sbjct: 223 QGLVRERRPASHGHEAAFADARILTARQALAAGLVDRIGYFEDALAETASLTGTSDLRVV 282 Query: 250 KDWNPPKNYWFCDLK-----NLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 P +L++ +P M G +W P Sbjct: 283 TYRREPLPGATEYATATTPAGSGRMALIDLGLPGMDAASRAGFHYLWLP 331 >gi|207108687|ref|ZP_03242849.1| signal peptide protease IV [Helicobacter pylori HPKX_438_CA4C1] Length = 292 Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 59/277 (21%), Positives = 134/277 (48%), Gaps = 7/277 (2%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ L+ + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKS----FMLLLIVLVFFSAKESTPSAPPNLAKLYLNGAIFSAEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P + +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ +A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQNRLMEL 252 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 + ++ + F + S ++++ + Sbjct: 253 SKVKKAYWLEKSPMER---FIEKATQSATNIITQALG 286 >gi|295107483|emb|CBL05026.1| signal peptide peptidase SppA, 36K type [Gordonibacter pamelaeae 7-10-1-b] Length = 356 Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 125/283 (44%), Gaps = 8/283 (2%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATA 68 + + S S V I I G I+ + L +++ + + A Sbjct: 73 FGTLGALGSTATTSDVDYLTSDAVGVIDIDGTIQYDGTTCSPEGLKAQLDVAAENKHIKA 132 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAET 126 +++ ++S GG+A AGE + +++ KPV+ M ASA Y IS ++ I A+T Sbjct: 133 VVLRVNSGGGTATAGEEMAAYVREFSESSGKPVVVSSASMNASAAYEISSQADFIYTAKT 192 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 + +G+IG Q + LDKLG+SI++V SS K + + Q++V+ Sbjct: 193 TAIGAIGTALQVTDLSGLLDKLGISIENVTSSDSKDSSYGTRPLTEEERAYYQNMVNQIN 252 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 F++ V+E R++ ++ L+ G +TG EA + GL D +G +E+ L + Sbjct: 253 ETFIQTVAEGRDMTVEEVRALATGLTFTGMEAVENGLADEIGTREDAVAKAAELANTTAY 312 Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + +K NP + +D +K+ + G A Sbjct: 313 KTVKLDNPSSSLSDLLDLMSESRLSADDLAQALKELENDGSLA 355 >gi|257790843|ref|YP_003181449.1| signal peptide peptidase SppA, 36K type [Eggerthella lenta DSM 2243] gi|325831972|ref|ZP_08165069.1| signal peptide peptidase SppA, 36K type [Eggerthella sp. HGA1] gi|257474740|gb|ACV55060.1| signal peptide peptidase SppA, 36K type [Eggerthella lenta DSM 2243] gi|325486293|gb|EGC88745.1| signal peptide peptidase SppA, 36K type [Eggerthella sp. HGA1] Length = 350 Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 64/264 (24%), Positives = 116/264 (43%), Gaps = 8/264 (3%) Query: 34 NSPHVARIAIRGQI------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 V I I G I + L +++R ++ A+++ ++S GG+A AGE + Sbjct: 86 TGDAVGVIDIDGTIQYDNTTSSPEGLKAQLDRAEKNSHIKAVVLRVNSGGGTATAGEEMA 145 Query: 88 RAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 ++ R KPV+ + ASA Y IS ++ I A+T+ +G+IG + Q + + Sbjct: 146 DYVRGFSERTGKPVVVSSASVNASAAYEISSQADYIYTAKTTAIGAIGTVMQVTDLSGLM 205 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 +KLG+S+ +V S+ K + + QD VD F++ V+E R++P + Sbjct: 206 EKLGISVDNVTSADSKDSSYGTRPLTEEERAYYQDQVDQINETFIQTVAEGRDMPVEDVR 265 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L+ G +TG A + GL D +G +++ L + NP + Sbjct: 266 ALATGLTFTGMTAVENGLADEIGTKDDAVAKAAELANIAHYTTVTLKNPTSSLSSLLDLM 325 Query: 266 LSISSLLEDTIPLMKQTKVQGLWA 289 + +D +K+ G A Sbjct: 326 SKSNVSTDDIARALKELDTDGSIA 349 >gi|264677100|ref|YP_003277006.1| peptidase S49 [Comamonas testosteroni CNB-2] gi|262207612|gb|ACY31710.1| peptidase S49 [Comamonas testosteroni CNB-2] Length = 302 Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 61/268 (22%), Positives = 118/268 (44%), Gaps = 7/268 (2%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISRDDSATALIVSLS 74 + V+F ++ SPH A + I+G+I + ++ + D + A+++ ++ Sbjct: 35 MWAVFFKDTATKTSTSPHTAVVEIKGEIASGADASAEFVVAAMRSAFEDSGSRAVVLLIN 94 Query: 75 SPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 SPGGS I + ++K + KP+ V E ASA Y I+ A++ I + S+VGSI Sbjct: 95 SPGGSPVQAGIINDEMTRLKAKYNKPLYAVVEESCASAAYYIAAAADEIFVDKASIVGSI 154 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GVL +DK+GV + + + K PFS ++ + + +++ + F+ + Sbjct: 155 GVLMDGFGFTGVMDKVGVERRLLTAGENKGFLDPFSPMSAQQKEFALQMLEQIHQQFIGV 214 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 V R +T + G WTG +A ++GL D +G + V + + + + Sbjct: 215 VKAGRGDRLHETPEMFSGLFWTGQQAVELGLADKLGSLDYVAREVVKAEEVIDYTRRDNV 274 Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMK 280 F + +P ++ Sbjct: 275 AERLAKRFGAAIGEGSVKAMRGLVPSIR 302 >gi|261838709|gb|ACX98475.1| signal peptide protease IV [Helicobacter pylori 51] Length = 292 Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 57/255 (22%), Positives = 125/255 (49%), Gaps = 4/255 (1%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESTPSAPPNLAKLYLNGAIFSTEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKDFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ +A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQNRLMEL 252 Query: 241 GVDQSIRKIKDWNPP 255 + ++ Sbjct: 253 SKVKKAYWLEKSPME 267 >gi|126642643|ref|YP_001085627.1| putative protease; putative signal peptide peptidase sppA [Acinetobacter baumannii ATCC 17978] Length = 338 Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 67/297 (22%), Positives = 132/297 (44%), Gaps = 18/297 (6%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQI-------EDSQELI 54 K + Y++ +V + + S +S H+A + I G I +S++ Sbjct: 45 FFKTLTFIYLLFIIVLMGKGCSTTKDGSTASSSSAHLAVVDIIGTIDASSNQAVNSEDTN 104 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAG 111 + ++R ++ A+ ++++SPGGS + I++ I+ + K V + +M AS Sbjct: 105 KALKRAFEASNSKAIALNINSPGGSPVQSDEIWQEIRYLKKEHPDKKVYAVIGDMGASGA 164 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I+ +SLVGSIGV+ + KLG+ +++ + K S +N Sbjct: 165 YYIASAADEIIVNPSSLVGSIGVIMPNYGITGLAQKLGIEDRTLTAGTNKDILSMTKPIN 224 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 P Q +Q V+D+ + F+ V E R + G WTG +A ++G+ D G Sbjct: 225 PVQRQHIQSVLDNVHTHFINAVKEGRGKRLKSNDPAIFSGLFWTGEQAIQLGVADRSGNI 284 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYW--FCDLKNLSISSLLEDTIPLMKQTKVQ 285 + + L +D + + NP ++ +S + + + + K+Q Sbjct: 285 TSLMRELK---LDNKVDYTIERNPLQSILGRMGSEMGKGLSESVAERLQTSQDAKLQ 338 >gi|332674201|gb|AEE71018.1| signal peptide peptidase SppA [Helicobacter pylori 83] Length = 292 Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 127/256 (49%), Gaps = 4/256 (1%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESAPSAPPNLAKLYLNGAIFSTEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P + +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ +A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQNRLMEL 252 Query: 241 GVDQSIRKIKDWNPPK 256 + ++ + Sbjct: 253 SKVKKAYWLEKSPMER 268 >gi|308185198|ref|YP_003929331.1| Signal peptide protease IV (Protease IV) (Endopeptidase IV) [Helicobacter pylori SJM180] gi|308061118|gb|ADO03014.1| Signal peptide protease IV (Protease IV) (Endopeptidase IV) [Helicobacter pylori SJM180] Length = 292 Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 58/256 (22%), Positives = 127/256 (49%), Gaps = 4/256 (1%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS N P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESAPSNPPNLAKLYLNGAIFSTEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P + +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQNRLMEL 252 Query: 241 GVDQSIRKIKDWNPPK 256 + ++ + Sbjct: 253 SKVKKAYWLEKSPMER 268 >gi|297380616|gb|ADI35503.1| signal peptide peptidase SppA, 36K type [Helicobacter pylori v225d] Length = 292 Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 126/256 (49%), Gaps = 4/256 (1%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESTPSAPPNLAKLYLNGAIFSAEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P + +Q+ Sbjct: 133 VYASKASLIGSIGVIFSSANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQNRLMEL 252 Query: 241 GVDQSIRKIKDWNPPK 256 + ++ + Sbjct: 253 SKVKKAYWLEKSPMER 268 >gi|317178138|dbj|BAJ55927.1| protease IV [Helicobacter pylori F16] Length = 292 Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 58/256 (22%), Positives = 126/256 (49%), Gaps = 4/256 (1%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I +++ + ++RI Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESAPSAPPNLAKLYLNGAIFSTEDFDKEVDRI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKDFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ +A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQDRLMEL 252 Query: 241 GVDQSIRKIKDWNPPK 256 + ++ + Sbjct: 253 SKVKKAYWLEKSPMER 268 >gi|224418348|ref|ZP_03656354.1| protease IV (PspA) [Helicobacter canadensis MIT 98-5491] gi|313141879|ref|ZP_07804072.1| protease IV [Helicobacter canadensis MIT 98-5491] gi|313130910|gb|EFR48527.1| protease IV [Helicobacter canadensis MIT 98-5491] Length = 291 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 63/255 (24%), Positives = 127/255 (49%), Gaps = 4/255 (1%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F++K K +L +V + F SS + +VARI ++G I S +E + ++ Sbjct: 11 LDFIMKYFKALVFLLIVVLI----FMPSSSENSSLANVARIDLKGMIIQSDSFLEELSKL 66 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + + +++ + SPGG+ I A+++++++KP++ AS YL ++ Sbjct: 67 ENNPNIKGVLLVIDSPGGTIPPSVEISEAVKRMRSKKPIVAYAQGSMASGSYLAGVWADR 126 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 I+A + +LVGSIGV+ V +KLG+ + +K+ K + N +M++ Sbjct: 127 IIANKGALVGSIGVILNGVDVSELAEKLGIKTQILKAGIYKEAGTFMRPWNQAEEEMLKG 186 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 ++ Y FV V +RN+ K + GR+++ + A K+GL+D + E ++L+ L Sbjct: 187 LIKEQYEMFVSEVVAARNLEITKEGEFAQGRVFSASNALKLGLVDSISSIYEAQKTLFEL 246 Query: 241 GVDQSIRKIKDWNPP 255 Q+ ++ Sbjct: 247 AKIQNPIWLQKSEME 261 >gi|217973227|ref|YP_002357978.1| signal peptide peptidase SppA [Shewanella baltica OS223] gi|217498362|gb|ACK46555.1| signal peptide peptidase SppA, 67K type [Shewanella baltica OS223] Length = 615 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 65/270 (24%), Positives = 121/270 (44%), Gaps = 14/270 (5%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 V I G I + E + + D AL++ + SPGGSA+A Sbjct: 322 VEQDSVGIIVASGTILNGTQPAGQIGGESTAELLRKARFDKHVKALVLRVDSPGGSAFAS 381 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + + +K KPV+ + +AAS GY IS +++ I A T+L GSIG+ + Sbjct: 382 EQIRQELLALKAAGKPVVVSMGSLAASGGYWISASADYIFATPTTLTGSIGIFGMITTFE 441 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L +GV V +S + ++P+ ++Q ++ Y F+ LV++ R + + Sbjct: 442 DSLASIGVHTDGVSTSEWAGLSVTRT-LSPQVEAIIQRHIERGYLDFISLVAKERKMTIE 500 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFC 261 + ++ GR+W+G +A ++GL+D +G +E L ++ + F Sbjct: 501 QVDKIAQGRVWSGKKALELGLVDELGDLDEAIAKAAKLADMTLFDTRVIEQELTPEQRFM 560 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 S+SS L ++ + + ++ + W Sbjct: 561 QQMFASVSSYLPASLS--QSSMLEQMLQQW 588 Score = 84.7 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 35/273 (12%), Positives = 89/273 (32%), Gaps = 36/273 (13%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51 +K+ + ++ ++ S ++ + + G I D + Sbjct: 23 RKLILNLIFFGILAAIIISIGSSEDIQVEDNSALVLNLAGSIVDQKQQVDPLEAAFKQGQ 82 Query: 52 -----------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRKPV 99 +++ I+ ++D + L++ ++I A+ + K Sbjct: 83 NANADGEILLADVLYVIDNAAQDQRISTLVLDLADLKRAGISKLQSIGDALNRFKESGKK 142 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 + + Y ++ ++ I V G+ Y K LDKL V + Sbjct: 143 VVAIGNYYEQNQYFLASFADTIYLNPQGGVSLDGLSMYNQYFKSALDKLKVKAHIFRVGT 202 Query: 160 MKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSD 209 K+ P+ +++ A + ++ + + + V+ +RNI + L Sbjct: 203 FKSAVEPYMRDDMSDAAREASSALLADVWQSYTQTVAGNRNIEPNSLVPDATTYLAELDK 262 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + A A + +D + E+ Q++ Sbjct: 263 ANGDSAAMAINMKWVDSLATTEDFRQTMLETVG 295 >gi|226939994|ref|YP_002795067.1| SohB [Laribacter hongkongensis HLHK9] gi|226714920|gb|ACO74058.1| SohB [Laribacter hongkongensis HLHK9] Length = 312 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 70/287 (24%), Positives = 127/287 (44%), Gaps = 22/287 (7%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNS-------PHVARIAIRGQI----EDSQELIER 56 I R L+++ L + S N PH A I I G I + ++++ + Sbjct: 29 IFFRLTWLAVILLVALPLFASWFGNSNDSLPAGGRPHAAVIDINGVINNENDSARKISDG 88 Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAGYL 113 ++ +D + +I+ +SPGGS + I++ + PV+ V E+ AS Y Sbjct: 89 LKNAYKDPNTRGIILRANSPGGSPVLSGMAYDEIRRQKTLHPDIPVLVAVEEVCASGCYY 148 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 I+ A++ I A + S+VGSIGVL + ++KLG+ + S K PFS P Sbjct: 149 IASAADKIFANQASIVGSIGVLSEGFGFTGAMEKLGIERRLATSGRDKGMGDPFSPQTPA 208 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 V M Q+++D+ + F+ V + R L GR+W G++A +GLID + + + Sbjct: 209 QVSMRQELLDTIHGQFITAVRQGRGKRLKTGEDLFTGRVWVGSQAVPLGLIDGLSSVDAI 268 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPL 278 + + D+ P ++ + I+ + D + + Sbjct: 269 ARE------QLDTDNVVDFTPKDSFSSRLGKRLGMQIADGVRDGLSM 309 >gi|218245954|ref|YP_002371325.1| signal peptide peptidase SppA, 67K type [Cyanothece sp. PCC 8801] gi|257059002|ref|YP_003136890.1| signal peptide peptidase SppA, 67K type [Cyanothece sp. PCC 8802] gi|218166432|gb|ACK65169.1| signal peptide peptidase SppA, 67K type [Cyanothece sp. PCC 8801] gi|256589168|gb|ACV00055.1| signal peptide peptidase SppA, 67K type [Cyanothece sp. PCC 8802] Length = 598 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 114/245 (46%), Gaps = 9/245 (3%) Query: 30 HVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSA 80 +S +A + + G I D + +I +D++ A+++ ++SPGGSA Sbjct: 304 PERSSSQKIAVVYLEGAIVDGLGTLQQVGGSRFANLLRQIRQDETIKAVVIRINSPGGSA 363 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 A + I R IQ + KPVI + +AAS GY ++ I A ++ GSIGV + Sbjct: 364 TASDIILREIQLTQAEKPVIISMGNVAASGGYWVATGGQHIFAQANTVTGSIGVFGLFLN 423 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + + G+S +VK++ + P+ + + Q V+ Y F+ V++SR + Sbjct: 424 INEIANNNGLSWDTVKTANFGDLGTATRPKTPQELAIYQGFVNQVYDLFLERVAKSRQLS 483 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 K ++ GRIW+G +AK +GL+D +GG + ++ ++ + Sbjct: 484 KTKVNEIAQGRIWSGEDAKTIGLVDSIGGLNAAINYAAQQAKLGTDWQLDEYPQRRGLES 543 Query: 261 CDLKN 265 ++N Sbjct: 544 LFIRN 548 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 55/314 (17%), Positives = 125/314 (39%), Gaps = 29/314 (9%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------- 51 + + LV L + S ++ V + Q++D++ Sbjct: 18 FLFMTIGVSGLVILLISLASLNTSPTIKDKSVLVFDLSTQVQDTEPPLTLSDVFSDEDQS 77 Query: 52 -----ELIERIERISRDDSATALIVSLSSPGGSAYAG--EAIFRAIQKVKNRKPVITEVH 104 ++++ IE+ ++DD A+ + S+ G + G I A+ + + I Sbjct: 78 VLTLRQVLQGIEKATKDDRIQAIFLDGSTASGGSGYGTFSEIREALAQFREAGKKIIVYD 137 Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 + Y +S ++ ++ + G+ + + DK G+ +++V+ K Sbjct: 138 VTLSEQEYYLSALADTVILNPMGQMELKGLAIEPLFWSGTFDKYGIGVQTVRVGSFKGAI 197 Query: 165 SPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL-SDGRIWTGAEAKKV 221 PF +++P+ Q +Q ++D + F+ V ++R + L ++ I T +A +V Sbjct: 198 EPFTRKDLSPENRQQLQALLDDLWSNFLVTVGKNREVSPQILQRLANNQGILTAQQALEV 257 Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI---SSLLEDTIPL 278 GL+D VG Q++ L L + + K + + ++ L + SS + + Sbjct: 258 GLVDEVGYQDQAIAKLKELTGTTNSTE-KSFPQVTLGTYLNVPVLQVPERSSSQKIAVVY 316 Query: 279 MKQTKVQGLWAVWN 292 ++ V GL + Sbjct: 317 LEGAIVDGLGTLQQ 330 >gi|329900911|ref|ZP_08272643.1| Peptidase S49 [Oxalobacteraceae bacterium IMCC9480] gi|327549323|gb|EGF33895.1| Peptidase S49 [Oxalobacteraceae bacterium IMCC9480] Length = 313 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 71/289 (24%), Positives = 120/289 (41%), Gaps = 17/289 (5%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDN--SPHVARIAIRGQI------EDSQELIERIER 59 I R L+ V + F + + H A I I G I ++ +I + + Sbjct: 29 IFFRLATLAAVVFGIWAFVSFGKTDTEVLTTHTALIDIDGTIESGGGSGSAESVIPALNK 88 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN---RKPVITEVHEMAASAGYLISC 116 D +A +I+ ++SPGGS I I ++ +KP+ V EM AS GY I+ Sbjct: 89 AYADTAAVGIILRINSPGGSPVQAGMINDEIGRLHKLYPKKPLYVVVDEMCASGGYYIAV 148 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 A++ I + S+VGSIGVL +DK+GV + + K PFS + K Sbjct: 149 AADKIFVNKASIVGSIGVLMDGFGFTGLMDKVGVERRLQTAGVNKGFMDPFSPQSEKQKA 208 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q+++D + F+ +V + R +T G WTG +A ++GL D G + V + Sbjct: 209 YAQEMLDEIHQQFIDVVRKGRGKRLKETPETFSGLFWTGTKAVEMGLADGFGTIDSVARD 268 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 + + D+ + LK + ++ +Q Sbjct: 269 ------EFKAEDVVDYTQHEGLPERVLKKFGAAMGAGAMKSIVSGAGLQ 311 >gi|171057279|ref|YP_001789628.1| peptidase S49 [Leptothrix cholodnii SP-6] gi|170774724|gb|ACB32863.1| peptidase S49 [Leptothrix cholodnii SP-6] Length = 340 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 67/262 (25%), Positives = 116/262 (44%), Gaps = 14/262 (5%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIERISRDDSATAL 69 +LV ++ + + N PH A + +RG+I + L+ + D A A+ Sbjct: 70 FALVAWGLLTQNNHASAP-NGPHTALVELRGEIAVDTEASADVLLSGLRSAFEDSGAQAV 128 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETS 127 ++ ++SPGGS I I ++K + K V V E AS Y ++ A++ I + S Sbjct: 129 VIRINSPGGSPVQAGIIHDEILRLKAKHDKEVYAVVEESCASGAYYVAVAADSIYVDKAS 188 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 +VGSIGVL ++KLGV + + + K PFS ++ Q ++D + Sbjct: 189 IVGSIGVLMDGFGFTSLMEKLGVERRMITAGSNKGMLDPFSPLSESQRAFAQSMLDQIHQ 248 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F+++V + R +T G W+G EA + GL D G E V + + Sbjct: 249 QFIKVVKDGRGERLKETPETFSGLFWSGEEAVRQGLADGFGNLEFVAREIVK------AE 302 Query: 248 KIKDWNPPKNYWFCDLKNLSIS 269 ++ D+ P +N K + Sbjct: 303 EVIDYTPHENVAERLAKRFGAA 324 >gi|186681712|ref|YP_001864908.1| signal peptide peptidase SppA, 67K type [Nostoc punctiforme PCC 73102] gi|186464164|gb|ACC79965.1| signal peptide peptidase SppA, 67K type [Nostoc punctiforme PCC 73102] Length = 611 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 60/264 (22%), Positives = 117/264 (44%), Gaps = 9/264 (3%) Query: 33 DNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAG 83 + +A + G+I D + + ++ +D A+++ ++SPGGSA A Sbjct: 314 SSKNQIAVVYAEGEIVDGKGDGGQVGGDRFAKIFNKLRQDKDVKAVVLRINSPGGSATAA 373 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 E + R ++ + KPV+ + ++AAS GY I+ SN I A ++ GSIGV + Sbjct: 374 EVMQREVKLTREVKPVVVSMGDVAASGGYWIASDSNRIFAEPNTITGSIGVFGLLFNGEK 433 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 G++ SVK+ + +P+ + + Q V+ Y+ F+ VS+ R +P K Sbjct: 434 LASDNGITWDSVKTGTYADSQTVSRPKSPQELALYQRSVNRIYNMFLNKVSQGRKLPEQK 493 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ GR+W+G AK++GL+D +GG +++++ ++ Sbjct: 494 VAEIAQGRVWSGVAAKEIGLVDEIGGLNSAIAYAVKEAKLGEDWEVQEYPRTSSFGERFF 553 Query: 264 KNLSISSLLEDTIPLMKQTKVQGL 287 + + I + L Sbjct: 554 GRATEEARTALGIEAAQLKPSNPL 577 Score = 100 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 56/322 (17%), Positives = 115/322 (35%), Gaps = 43/322 (13%) Query: 1 MEFVLKKIKTRYV--MLSLVT------------LTVVYFSWSSHVEDNSPHVARIAIRGQ 46 M +K+ V +L L+ + S + V + + Sbjct: 1 MRNFIKQTFASLVGTLLGLIIFGGLGTTGLLLLIFAASSSKDTGPNVKDKSVLVFDLSMK 60 Query: 47 IEDSQ----------------------ELIERIERISRDDSATALIVSL--SSPGGSAYA 82 I DS+ +++E +E+ RD + + +S G+ Sbjct: 61 ITDSEPSSDELFQNTISGVDDERMALRKVVETLEKARRDPRIVGIYLDSTSASQAGNVGY 120 Query: 83 GE--AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 I +A+++ + I + Y +S ++ IV ++ G+ Q + Sbjct: 121 ASLKEIRKALEEFRASGKKIVAYGSDWSEKEYYLSSVADSIVLNPLGMMEVNGLSSQPMF 180 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L K G+ ++ V+ K PF +++P+ + Q ++D + + V SR Sbjct: 181 LAGALQKYGIGVQVVRVGKFKGAVEPFILKKLSPENREQTQKLLDDVWGEWRTTVGASRK 240 Query: 199 IPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 I ++ ++D + +AK GL+D V +EV L L K N Sbjct: 241 IEPNQLQAIADSQAVLEATQAKTSGLVDRVAYPDEVVSDLKKLTNSDKDDKTFRQINLNN 300 Query: 258 YWFCDLKNLSISSLLEDTIPLM 279 Y K+L + ++ I ++ Sbjct: 301 YAEVSGKSLGVERSSKNQIAVV 322 >gi|300866223|ref|ZP_07110935.1| signal peptide peptidase A [Oscillatoria sp. PCC 6506] gi|300335742|emb|CBN56095.1| signal peptide peptidase A [Oscillatoria sp. PCC 6506] Length = 272 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 134/264 (50%), Gaps = 8/264 (3%) Query: 36 PHVARIAIRGQIE--DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 +ARI I G I + ++E ++ + AL++ + SPGG+ + I+ A++++ Sbjct: 11 KQIARIEINGAIAQEARKRVLEALKTVEE-RKFPALLLRIDSPGGTVGDSQEIYSALKRL 69 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 +++ ++ ++AS G I + IV ++ GSIGV+ + ++ L+K+GVS K Sbjct: 70 QDQVKIVASFGNISASGGVYIGMGAPHIVTNPGTITGSIGVIIRGNNIEGLLEKVGVSFK 129 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 ++KS P K + E+ +++QD++D++Y FV+ V+E+RNIP + +DGRI+ Sbjct: 130 TIKSGPYKDILAFDRELTEPEKEILQDLIDNTYQQFVQTVAEARNIPIETVKTFADGRIF 189 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR----KIKDWNPPKNYWFCDLKNLSIS 269 +G +A ++G++D +G +++ + L + ++ P + S Sbjct: 190 SGQQALELGVVDRLGTEDDARRWAAELAGLDPEKTECCTLEKPKPFLTRALGSSLDTSGL 249 Query: 270 SLLEDTIPLMKQTKVQGLWAVWNP 293 S + + LW ++ P Sbjct: 250 SSAGNWLEFELSVSGLPLW-LYRP 272 >gi|297538693|ref|YP_003674462.1| peptidase S49 [Methylotenera sp. 301] gi|297258040|gb|ADI29885.1| peptidase S49 [Methylotenera sp. 301] Length = 327 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 66/283 (23%), Positives = 118/283 (41%), Gaps = 14/283 (4%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERIS 61 K + L + H A I + G I ++ + + Sbjct: 46 FFKGLMFAYLFIILFLAMGWLGGGKSSTGSHTALIEVAGVIEAGGAVNADSFMSSLHDAY 105 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAGYLISCAS 118 D + +I+ ++SPGGS I I++ + + PV V ++ AS GY I+ A+ Sbjct: 106 DDKNTKGIILRINSPGGSPVQAGIINDEIKRQKKLHPKIPVYAVVEDICASGGYYIAAAA 165 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I + S+VGSIGVL + K+GV + + + KA PFS VNPK + Sbjct: 166 DKIYVDKASIVGSIGVLMDGYGFTEVMKKVGVERRLLTAGENKAMLDPFSPVNPKHQALA 225 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 Q +++ + F +V + R +T G W+G E+ K+GL D +G + V + + Sbjct: 226 QAMLNEIHEQFKTVVRQGRGSRLKETPETFSGLFWSGEESIKMGLADALGSADYVARDVI 285 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 KI D+ +++ K + S + ++ + Sbjct: 286 K------EEKIVDFTSQEDFTSRIAKRIGASMAKAVGVDVLTK 322 >gi|15612393|ref|NP_224046.1| putative protease IV [Helicobacter pylori J99] gi|4155951|gb|AAD06917.1| putative PROTEASE IV [Helicobacter pylori J99] Length = 292 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 127/256 (49%), Gaps = 4/256 (1%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESAPSEPPNLAKLYLNGAIFSTEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P + +Q+ Sbjct: 133 VYASKASLIGSIGVIFSSANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ +A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVDDVAKARKLNAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQDRLMEL 252 Query: 241 GVDQSIRKIKDWNPPK 256 + ++ + Sbjct: 253 SKVKKAYWLEKSPMER 268 >gi|163311063|pdb|3BF0|A Chain A, Crystal Structure Of Escherichia Coli Signal Peptide Peptidase (Sppa), Native Crystals gi|163311064|pdb|3BF0|B Chain B, Crystal Structure Of Escherichia Coli Signal Peptide Peptidase (Sppa), Native Crystals gi|163311065|pdb|3BF0|C Chain C, Crystal Structure Of Escherichia Coli Signal Peptide Peptidase (Sppa), Native Crystals gi|163311066|pdb|3BF0|D Chain D, Crystal Structure Of Escherichia Coli Signal Peptide Peptidase (Sppa), Native Crystals Length = 593 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 294 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 353 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 354 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 413 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A MMQ +++ Y F+ LV+++R+ Sbjct: 414 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQLMMQLSIENGYKRFITLVADARH 472 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 473 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 531 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 532 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 560 Score = 89.3 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 11/208 (5%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASA 110 +++ I + D + T +++ L + G + I +A+++ ++ + V E + Sbjct: 74 DIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQG 133 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168 Y ++ +N I + +V G Y K LDKL VS + K+ PF Sbjct: 134 QYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRD 193 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKK 220 +++P A + + + ++ V+ +R IP ++ L+ T A + Sbjct: 194 DMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALE 253 Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+D + E+ ++L K Sbjct: 254 NKLVDALASSAEIEKALTKEFGWSKTDK 281 >gi|253688357|ref|YP_003017547.1| signal peptide peptidase SppA, 67K type [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754935|gb|ACT13011.1| signal peptide peptidase SppA, 67K type [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 616 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 67/285 (23%), Positives = 126/285 (44%), Gaps = 17/285 (5%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDS 65 + V++ N+ +A + G I D +I D Sbjct: 306 FNFVSIYDYVV---KPPVQNNNQIAVVFANGAIIDGPETPGMVGGDTTAAQIRAARLDPK 362 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAA 124 AL++ ++SPGGS A E I + ++ KP++ + MAAS GY IS +N I+++ Sbjct: 363 VKALVLRVNSPGGSVTASELIRSELMALRLAGKPIVVSMGGMAASGGYWISTPANAIISS 422 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 ++L GSIG+ + L+ LGV V +SP+ S + P+ QMMQ ++ Sbjct: 423 ASTLTGSIGIFGVITTFENSLESLGVHTDGVATSPLADLSITKS-LPPEFSQMMQLSIER 481 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 Y F+ +V+++R ++ ++ G +W G++AK+ GL+D +G ++ + L Sbjct: 482 GYKNFIDIVAQARKKTPEQIDQIAQGHVWVGSDAKENGLVDQIGDFDDAVKKAAELAKL- 540 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 ++ + L ++ S +P+ Q+ + A Sbjct: 541 GQYQLNWYAEQPGLLDTMLNQVNASVY--ALLPVAVQSMLPAPVA 583 Score = 93.5 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 101/280 (36%), Gaps = 38/280 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + F+ + I +++ ++ +Y + E + + + G + D Sbjct: 19 LNFIREFILNIFLIALILVGVGIYSQVKTTPEAATKGALLVDLTGVVVDQPTVNNKLRQL 78 Query: 52 ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92 ++++ I + DD+ T +++ LS G+ + I +A+++ Sbjct: 79 GREFFGASNNRRQENSLFDIVDSIRQAKSDDNITGMVLDLSDFTGADQPSLQYIGKALRE 138 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 ++ I V + + Y ++ +N + V G Y K LDKL V+ Sbjct: 139 FRDSGKPIYAVGDSYNQSQYYLASFANTVSLTPQGSVDLHGFATNNLYFKSMLDKLKVTT 198 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 + K+ P+ +++P A +++ + ++ VS +R I + + G Sbjct: 199 NIFRVGTYKSAVEPYLRDDMSPAARDADGRWINALWQQYLNTVSANRQITPQQLFPGAAG 258 Query: 211 RI--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 I T A L+D V + QSL Sbjct: 259 IIAGLQSVQGDTARYALDNKLVDEVASRSMTEQSLVKAFG 298 >gi|188528198|ref|YP_001910885.1| protease IV (PspA) [Helicobacter pylori Shi470] gi|188144438|gb|ACD48855.1| protease IV (PspA) [Helicobacter pylori Shi470] Length = 292 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 126/256 (49%), Gaps = 4/256 (1%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESAPSAPPNLAKLYLNGAIFSAEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P + +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQNRLMEL 252 Query: 241 GVDQSIRKIKDWNPPK 256 + ++ + Sbjct: 253 SKVKKAYWLEKSPMER 268 >gi|183219875|ref|YP_001837871.1| peptidase PfaP [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910003|ref|YP_001961558.1| periplasmic serine protease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774679|gb|ABZ92980.1| Periplasmic serine protease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778297|gb|ABZ96595.1| Peptidase PfaP (Periplasmic flagella-associated protein; PF-associated peptidase) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 321 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 62/256 (24%), Positives = 127/256 (49%), Gaps = 11/256 (4%) Query: 40 RIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + I G+I + ++ ++ + D + +++ ++SPGG+ A + IF + Sbjct: 53 VLPIVGEIHSGESTFDSTGADTVLRQLRELDEDTNVKGILIEINSPGGTVAASQEIFNEL 112 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ K ++ + ++AAS GY I+ AS+ I A ++ GSIGV+ P VK LD+ GV Sbjct: 113 LHLRKSKKIVVSMKDVAASGGYYIAAASDYIFAENGTITGSIGVISFAPNVKGLLDRYGV 172 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 +++ K+ K SPF + + M+ + +Y FV V++ RN L++G Sbjct: 173 GVRTYKAGKYKDMYSPFRDSTNEEDDMIGKQLQDTYRKFVEDVAKGRNKTVKSIEELAEG 232 Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270 +I++G +A + L+D +GG+ E + L L + + + + + + +++L + Sbjct: 233 KIYSGEDAFRNKLVDDIGGRREAHKKLSELCQYEGLIPLFEQEY--SPFERMIRSLGVKF 290 Query: 271 LLEDTIPLMKQTKVQG 286 L E + + +Q Sbjct: 291 LGEGSQTSKIRALLQS 306 >gi|210135599|ref|YP_002302038.1| signal peptide protease IV [Helicobacter pylori P12] gi|210133567|gb|ACJ08558.1| signal peptide protease IV [Helicobacter pylori P12] Length = 292 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 126/256 (49%), Gaps = 4/256 (1%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESAPSAPPNLAKLYLNGAIFSTEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P + +Q+ Sbjct: 133 VYASKASLIGSIGVIFSSANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQDRLMEL 252 Query: 241 GVDQSIRKIKDWNPPK 256 + ++ + Sbjct: 253 SKVKKAYWLEKSPMER 268 >gi|170700222|ref|ZP_02891238.1| peptidase S49 [Burkholderia ambifaria IOP40-10] gi|170134855|gb|EDT03167.1| peptidase S49 [Burkholderia ambifaria IOP40-10] Length = 330 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 67/286 (23%), Positives = 125/286 (43%), Gaps = 17/286 (5%) Query: 7 KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 KI R+ + L+ ++ FS + H A + I G+I +++++ ++ Sbjct: 44 KIFFRFAFLGVFLLLAFALIDFSSDAKFSAGGHHTALVTIDGEIAAGTNANAEDINTALD 103 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115 DD A +++ ++SPGGS ++ I++++ + KP+ V +M AS GY I+ Sbjct: 104 AAFDDDGAAGVVLRINSPGGSPVQAGMVYDEIRRLRTKYPDKPLYVVVTDMCASGGYYIA 163 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL + KLGV + S K PFS PK Sbjct: 164 SAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVDRRLHTSGENKGFYDPFSPETPKMD 223 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q++++ + F++ V E R +T + G WTG ++ ++GL D G + V + Sbjct: 224 AHAQELLNQVHAQFIKAVKEGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDTVAR 283 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 + + D+ ++ + + L Sbjct: 284 DVLK------APDLVDYTVKESLTNRVARKFGAAVGGAAMKALAAG 323 >gi|317014847|gb|ADU82283.1| putative protease IV [Helicobacter pylori Gambia94/24] Length = 292 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 59/277 (21%), Positives = 135/277 (48%), Gaps = 7/277 (2%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESAPSEPPNLAKLYLNGAIFSTEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P + +Q+ Sbjct: 133 VYASKASLIGSIGVIFSSANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ +A + LID + ++ L L Sbjct: 193 LVNEQYQMFVDDVAKARKLNAKDYKDFAEGKVFSAQKALNLKLIDKISTIKQAQDRLMEL 252 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 + ++ + F + S++S++ + Sbjct: 253 SKVKKAYWLEKSPMER---FIEKATQSVTSIITQALG 286 >gi|271500691|ref|YP_003333716.1| signal peptide peptidase SppA, 67K type [Dickeya dadantii Ech586] gi|270344246|gb|ACZ77011.1| signal peptide peptidase SppA, 67K type [Dickeya dadantii Ech586] Length = 616 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 123/280 (43%), Gaps = 14/280 (5%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALI 70 T +Y ++ +S +A + G I D +I D A+I Sbjct: 308 FTSIYDYTTTPPATSSNEIAVVFASGTIIDGKETPGYVGGDTTAAQIRDARLDPKVKAII 367 Query: 71 VSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + ++SPGGS A E I + + KPVI + MAAS GY IS +N I+A+ +L Sbjct: 368 LRVNSPGGSVTASELIRSELMAARQAGKPVIVSMGGMAASGGYWISTPANTIIASPNTLT 427 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIG+ + LD +GV V +SP+ + + P+ Q+MQ ++ Y F Sbjct: 428 GSIGIFGVVTTFENALDSIGVHTDGVATSPLADLSQTKT-LPPQVSQLMQLSIERGYQNF 486 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 + LV++SR + ++ G +W G++AK GL+D +G ++ + L ++ Sbjct: 487 ISLVAQSRQKTPQEVDAIAQGHVWVGSDAKANGLVDQLGDFDDAVKKAAELAKL-EQYQL 545 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + ++ + S + +P Q V A Sbjct: 546 SWYTEEPDLL--NVMFSQVRSSVYALLPSAVQALVPAPVA 583 Score = 97.0 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 45/291 (15%), Positives = 103/291 (35%), Gaps = 38/291 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + F+ + I +++ ++ +Y + + + + + G + D Sbjct: 19 LNFIREFILNLFLVCLILVAIGIYSQFKAPPTEPVRGALLLDLTGVVVDKPSVNNKLRQF 78 Query: 52 ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92 ++++ I + D + T +++ LS G+ + I +A+++ Sbjct: 79 GREFFGASASRHQENSLFDIVDSIRQAKNDSNITGMVMDLSDFVGADQPSLQYIGKALRE 138 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 ++ I V + Y ++ +N I V G Y K LDKL V+ Sbjct: 139 FRDAGKPIFAVGDNFNQTQYYLASFANKIYLTPQGNVDLHGFATNNLYYKTLLDKLKVTA 198 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT----LV 206 + K+ PF +++P A + + + + ++ V+ +R I + Sbjct: 199 HIFRVGTYKSAVEPFIRDDMSPDAREADNRWISTLWQHYLDTVAANRQITPQQVFPGADA 258 Query: 207 LSDGR----IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 + G T A + L+D V + QSL + K ++ Sbjct: 259 VLAGLQKMDGDTARYALENKLVDEVAPHSAIEQSLIKAFGWDAKTKNFNFT 309 >gi|238754912|ref|ZP_04616262.1| Protease 4 [Yersinia ruckeri ATCC 29473] gi|238706923|gb|EEP99290.1| Protease 4 [Yersinia ruckeri ATCC 29473] Length = 616 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 69/285 (24%), Positives = 127/285 (44%), Gaps = 23/285 (8%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATAL 69 +++ + V+ +A I I G I D +I + A+ Sbjct: 308 AISIYDYRPVPAVQQGEE-IAVIFINGAIMDGPQTPGSVGGDNTAAQIREARLNPKIKAV 366 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 ++ ++SPGGS A E I + ++ KP++ + MAAS GY +S +N I+A+ ++L Sbjct: 367 VLRVNSPGGSVSASELIRSELVALRAANKPLVVSMGGMAASGGYWVSTPANYIIASPSTL 426 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIG+ + L+ LGV V +SP+ + + P+ Q+MQ +++ Y Sbjct: 427 TGSIGIFGVINTYQDSLETLGVHTDGVATSPLADVSVTKN-LPPEFSQIMQISIENGYKN 485 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 FV LV+ SR+ ++ ++ G +W G +AK GL+D +G ++ + L ++ + Sbjct: 486 FVDLVATSRHKTPEQVDEIAQGHVWLGLDAKNNGLVDQLGDFDDAVKKAAELAKLKTYQI 545 Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 WF D N + L+ + + + W P Sbjct: 546 ---------NWFVDQPNF--ADLILGQMTASVHAMLPSVLQAWLP 579 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 46/298 (15%), Positives = 104/298 (34%), Gaps = 44/298 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + FV + I +++ + +Y S + + + G + D+ Sbjct: 19 LNFVREFILNLFLIFLIAIGVGIYLLVQSKPVEPVKGALLVNLSGIVVDTPAVNNKVMQF 78 Query: 52 ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92 +++E I + D + + +++SLS G+ + I +A+++ Sbjct: 79 TRELLGASSNRLQENSLFDVVETIRQAKTDKNISGMVLSLSDFSGADQPSLQYIGKALRE 138 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 ++ I V + Y ++ +N I + + G Y K L+KL V+ Sbjct: 139 FRDSGKPIFAVGDSYNQQQYYLASFANKIYLSPQGTIDLKGFASNNLYYKSLLEKLKVTT 198 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203 + K+ P +++P A + + + ++ V+ +R + ++ Sbjct: 199 NIFRVGTYKSAVEPMIRDDMSPAAREADSRWIGGLWQNYLTAVAANRQLSPEQLFPGAAN 258 Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNP 254 L TG A + L+D + + V L D + I D+ P Sbjct: 259 IISGLQAVGGDTGKYALEHKLVDQLATRPAVEAELIKTFGWNKRSNDYNAISIYDYRP 316 >gi|308064188|gb|ADO06075.1| protease IV (PspA) [Helicobacter pylori Sat464] Length = 292 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 58/256 (22%), Positives = 126/256 (49%), Gaps = 4/256 (1%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESAPSEPPNLAKLYLNGAIFSAEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P Q +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKQFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQNRLMEL 252 Query: 241 GVDQSIRKIKDWNPPK 256 + ++ + Sbjct: 253 SKVKKAYWLEKSPMER 268 >gi|261339471|ref|ZP_05967329.1| signal peptide peptidase SppA [Enterobacter cancerogenus ATCC 35316] gi|288318284|gb|EFC57222.1| signal peptide peptidase SppA [Enterobacter cancerogenus ATCC 35316] Length = 618 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 74/273 (27%), Positives = 128/273 (46%), Gaps = 14/273 (5%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPG 77 + +D+ +A + G I D QE +I D A+++ ++SPG Sbjct: 317 AAKKPDDSGDSIAVVFANGAIMDGQETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPG 376 Query: 78 GSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GS A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 377 GSVSASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFG 436 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 V+ LD LGV V +SP+ S + P+ +MMQ +++ Y F+ LV++S Sbjct: 437 VINTVENSLDYLGVHTDGVATSPLADVSVTKS-LPPEVSEMMQLSIENGYKRFITLVADS 495 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R ++ ++ G +WTG +AK GL+D +G ++ + L + + Sbjct: 496 RKKTPEQIDQIAQGHVWTGQDAKSNGLVDSLGDFDDAVKKAAELAKL-KQWHVDYYQDEP 554 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 +++ + ++S+S + +P Q + A Sbjct: 555 SFFDMVMNSMSVS--VRAMLPEAMQAYLPAPVA 585 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 47/288 (16%), Positives = 103/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + ++ L LV + + S +S + ++ + I G I D Sbjct: 19 LNFVRNLVMNIFFIFLVLVCVGIWMHISSTSQAQHSTRGALLLDITGVIVDKPSTSNRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 ++++ I + D + T +++ L G+ + I +A+ Sbjct: 79 VIGRQLFGATSDRLQENSLFDIVDTIRQAKDDRNITGIVLDLKDFAGADQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V + + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDAGKPVIAVGDSYSQGQYYLASFANKIWLSPQGTVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 + + K+ PF +++P A + + + ++ ++ +R I ++ Sbjct: 199 TTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLGTIAANRQITKEQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L T A L+D +G +V ++L K Sbjct: 259 QGVLDGLRKADGDTAKYALDNKLVDALGSSADVEKALTKQFGWSKEDK 306 >gi|124026360|ref|YP_001015476.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus marinus str. NATL1A] gi|123961428|gb|ABM76211.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus marinus str. NATL1A] Length = 269 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 69/264 (26%), Positives = 128/264 (48%), Gaps = 5/264 (1%) Query: 33 DNSPHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + +ARI I G I +++ +++I + AL++ + SPGG+ + I A+ Sbjct: 8 KSKKRMARICIEGPINSETRKIVLKALKQIEERE-FPALLLRIDSPGGTVGDSQEIHSAL 66 Query: 91 QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++ + V+ ++AS G I + IVA ++ GSIGV+ + + L+K+G Sbjct: 67 LRLREKGCHVVASFGNISASGGVYIGVGAEKIVANPGTITGSIGVILRGNNLSKLLEKVG 126 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + ++VKS K SP ++ + ++Q ++DSSY FV VS+ RN+ + +D Sbjct: 127 IKFETVKSGIYKDILSPDRPLSTEERALLQSLIDSSYEQFVLAVSKGRNLTPEVVKSFAD 186 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 GR++TG +AK+ GL+D +G + + + K + K L I Sbjct: 187 GRVFTGEQAKEFGLVDEIGDENDAKLLAIKIANLDEKTKPITFGKTKKKLLGFLPGGKII 246 Query: 270 SLLEDTIPLMKQTKVQGLWAVWNP 293 L + + L + Q LW ++ P Sbjct: 247 HNLANALNLELEGNGQILW-LFKP 269 >gi|124265853|ref|YP_001019857.1| putative protease transmembrane protein [Methylibium petroleiphilum PM1] gi|124258628|gb|ABM93622.1| putative protease transmembrane protein [Methylibium petroleiphilum PM1] Length = 336 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 61/262 (23%), Positives = 114/262 (43%), Gaps = 15/262 (5%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSAT 67 V+ +L+ ++ + + PH A I IRG+I ++ + + D A Sbjct: 64 VIFALIAWALIT-QQRNAAVPSGPHTALIEIRGEIAAEALASAEGINAALRTAFEDAGAQ 122 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 A+++ ++SPGGS + I++ + K + E+ ASA Y I+ ++ I Sbjct: 123 AVVLRINSPGGSPVQAGLVTDEIRRLKGLHADKKLYAVCEELCASAAYYIAAVADEIFVD 182 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 + S+VGSIGVL ++KLGV + + + K PFS ++ Q +V+ Sbjct: 183 KASIVGSIGVLMDGFGFTGTMEKLGVERRLITAGDNKGLLDPFSPLSEAHKAYAQAMVNQ 242 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 + F+++V + R + G W+G A + GL D +G + V + + Sbjct: 243 IHQQFIKVVKDGRGARLKEAPETFSGLFWSGESAVQQGLADRLGSLDYVAREVVK----- 297 Query: 245 SIRKIKDWNPPKNYWFCDLKNL 266 ++ D+ P +N K Sbjct: 298 -AEEVIDYTPKENVAERLAKRF 318 >gi|253998978|ref|YP_003051041.1| peptidase S49 [Methylovorus sp. SIP3-4] gi|313201082|ref|YP_004039740.1| peptidase s49 [Methylovorus sp. MP688] gi|253985657|gb|ACT50514.1| peptidase S49 [Methylovorus sp. SIP3-4] gi|312440398|gb|ADQ84504.1| peptidase S49 [Methylovorus sp. MP688] Length = 316 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 72/278 (25%), Positives = 118/278 (42%), Gaps = 18/278 (6%) Query: 6 KKIKTRYVMLSLVTLTVVYFSW----SSHVEDNSPHVARIAIRGQIEDSQ-----ELIER 56 + + L+ + L ++ F NS H A I I G I ++I Sbjct: 31 RFWGVLFKSLTFIYLFMLLFYALDWVGGDSSANSDHTAIIDIYGVIGSDDQVSADDVIGS 90 Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAGYL 113 +E + +I+ ++SPGGS I I +K+ PV V ++ AS GY Sbjct: 91 LESAYENKHTKGIILRINSPGGSPVQAGIINDEIHRQRKLHPNIPVYAVVEDICASGGYY 150 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 I+ A++ I + S+VGSIGVL +DK+GV + + + KA PFS VNPK Sbjct: 151 IAVAADKIFVDKASIVGSIGVLMDGFGFTGIMDKVGVERRLLTAGENKAILDPFSPVNPK 210 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 + Q +++ + F+ +V E R +T G W+G + ++GL D G + V Sbjct: 211 HKEYAQSMLNQIHQQFIAVVREGRGKRLKETDDTFSGLFWSGETSVQMGLADGFGSSDYV 270 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 + + KI D+ + K + S Sbjct: 271 AREIIKQ------EKIVDFTAREGLADKFAKRIGASMG 302 >gi|317011567|gb|ADU85314.1| Signal peptide protease IV (Protease IV) (Endopeptidase IV) [Helicobacter pylori SouthAfrica7] Length = 292 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 61/277 (22%), Positives = 134/277 (48%), Gaps = 7/277 (2%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS N P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESAPSNPPNLAKLYLNGAIFSAEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVEDLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKDFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + + ++G++++ A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARKLDANHYKDFAEGKVFSAQNALKLKLIDKISTIKQAQNRLMEL 252 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 + ++ + F + S S ++ + Sbjct: 253 SKVKKAYWLEKSPMER---FIEKATQSASHIITQALG 286 >gi|115351045|ref|YP_772884.1| peptidase S49 [Burkholderia ambifaria AMMD] gi|115281033|gb|ABI86550.1| peptidase S49 [Burkholderia ambifaria AMMD] Length = 330 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 67/286 (23%), Positives = 123/286 (43%), Gaps = 17/286 (5%) Query: 7 KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 KI R+ + L+ ++ FS + H A + I G+I + +++ ++ Sbjct: 44 KIFFRFAFLGVFLLLAFALIDFSNDAKFASTGRHTALVTIDGEIAAGTNANGEDINTALD 103 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115 DD A +++ ++SPGGS ++ I++++ + KP+ V +M AS GY I+ Sbjct: 104 AAFDDDGAAGVVLRINSPGGSPVQAGMVYDEIRRLRTKYPNKPLYVVVTDMCASGGYYIA 163 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL + KLGV + S K PFS PK Sbjct: 164 SAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVDRRLHTSGENKGFYDPFSPETPKMD 223 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q ++D + F++ V + R +T + G WTG ++ ++GL D G + V + Sbjct: 224 AHAQALLDQVHAQFIKAVKDGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDTVAR 283 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 + + D+ ++ + + L Sbjct: 284 DVLK------APDLVDYTVKESLTNRVARKFGAAVGGAAMKALAAG 323 >gi|326795267|ref|YP_004313087.1| peptidase S49 [Marinomonas mediterranea MMB-1] gi|326546031|gb|ADZ91251.1| peptidase S49 [Marinomonas mediterranea MMB-1] Length = 367 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 85/277 (30%), Positives = 124/277 (44%), Gaps = 17/277 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSS---HVEDNSPHVARIAIRGQI-----EDSQELIERIE 58 KI R+V L L+ V +S SS VA I +RG I D+ E IE Sbjct: 88 KIFFRFVGLFLIVGIFVGWSASSVVEDAALTGDSVALIPMRGTIGAGLDIDADEYSLLIE 147 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAGYLIS 115 D A+++ ++SPGGS ++ + +K P+I V +MAAS GY I+ Sbjct: 148 DAYADARTKAVVIKMNSPGGSPVHSGILYDLLMSKRKSYPDIPLIVVVSDMAASGGYYIA 207 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I A + SLVGSIGV+ L+ +GV ++ + KA PFS + P A Sbjct: 208 SAADEIYADKASLVGSIGVVSPGFDASGLLESIGVERRTFTAGEDKAFLDPFSPMTPSAA 267 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q Q V+DS++ F+ V + R L G ++TG +A GLID + V Sbjct: 268 QKWQSVLDSTHKQFIEAVKKGRGDRLSLERDLFTGMVFTGEQAVSYGLIDGLDYTGHVLS 327 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 S + S + P + W K L IS Sbjct: 328 SRF------SNLTPVYYEPREEPWKEVAKELGISFAT 358 >gi|295706883|ref|YP_003599958.1| signal peptide peptidase SppA, 36K type [Bacillus megaterium DSM 319] gi|294804542|gb|ADF41608.1| signal peptide peptidase SppA, 36K type [Bacillus megaterium DSM 319] Length = 336 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 77/331 (23%), Positives = 142/331 (42%), Gaps = 45/331 (13%) Query: 6 KKIKTRYV---MLSLVTLTVVYFSWSSHVEDN----------------------SPHVAR 40 K+ + + + + FS ++ + +A Sbjct: 4 KRWIALLIAACLFIFSAIVNIGFSVKEEKDNGLAGIFGGDDSELSETVIEKGNVAKKIAV 63 Query: 41 IAIRGQIEDS---------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + + G I+D+ Q ++++E D + +I+ ++SPGG Sbjct: 64 LEVNGTIQDTGSGSSPLMSQNGYNHQAFLKQLEAAKNDKAVKGVIIKVNSPGGGVVESAE 123 Query: 86 IFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I + I+++K +KPV + MAAS GY IS A+N I A +L GS+GV+ Q Sbjct: 124 IHKKIEELKKDTKKPVYISMGSMAASGGYYISTAANKIYAIPDTLTGSLGVIMQSVNYGK 183 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 DKLGV +KS K SP E+ + ++MQ +VD+SY FV ++SE R++ +K Sbjct: 184 LADKLGVESVVIKSGAHKDIMSPTREMTGEEKEIMQTLVDNSYDGFVNVISEGRHLSKEK 243 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD---WNPPKNYWF 260 ++DGR++ G +AK++ L+D +G E+ + + + + I+ + P Sbjct: 244 VRSIADGRVYDGRQAKELKLVDQLGYFEDAVKGMEKDYKLKGAQVIQYNQGFGLPSWLSM 303 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 K + + + Q L ++ Sbjct: 304 SMQKVIGGDEQVTAMLKTFAQPSSPRLMYLY 334 >gi|56752187|ref|YP_172888.1| protease IV [Synechococcus elongatus PCC 6301] gi|81300725|ref|YP_400933.1| signal peptide peptidase A [Synechococcus elongatus PCC 7942] gi|56687146|dbj|BAD80368.1| protease IV [Synechococcus elongatus PCC 6301] gi|81169606|gb|ABB57946.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49 [Synechococcus elongatus PCC 7942] Length = 270 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 68/264 (25%), Positives = 127/264 (48%), Gaps = 6/264 (2%) Query: 34 NSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 +ARI + G I Q L+ ++ ++ AL++ + SPGG+ + I+ A++ Sbjct: 9 ARKQIARIEVSGAIAGGTRQRLLRSLKTVAE-RGYPALLLRIDSPGGTVGDSQEIYEALK 67 Query: 92 KVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++++ I ++AS G I ++ IV+ ++ GSIGV+ + ++ LD++G Sbjct: 68 RLRSQHQTKVIASFGNISASGGVYIGMGADKIVSNPGTITGSIGVILRGNNLERLLDRVG 127 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 VS K +KS P K S E+ +++Q+++D SY FV+ V+++R + + +D Sbjct: 128 VSFKVIKSGPYKDILSFDRELTDNEKEILQNLIDISYQQFVQTVADARQLTVETVKSFAD 187 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 GRI+TG +A +GLID +G +E+ + L + L L Sbjct: 188 GRIFTGEQALSLGLIDRLGTEEDARRWAAELVGLDPEKATLAPIEEPKPLTRRLLPLGQV 247 Query: 270 SLLEDTIPLMKQTKVQGLWAVWNP 293 D + Q LW ++ P Sbjct: 248 GAGLDWLEFELTAAGQPLW-LYRP 270 >gi|33866416|ref|NP_897975.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp. WH 8102] gi|33633194|emb|CAE08399.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp. WH 8102] Length = 270 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 67/257 (26%), Positives = 129/257 (50%), Gaps = 6/257 (2%) Query: 41 IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK- 97 I + G I S Q +++ I + + AL++ + SPGG+ + I A+ +++ + Sbjct: 16 IVVDGPITGSTRQRVLKAIRDVEERE-FPALLLRIDSPGGTVGDSQEIHAALLRLREKGC 74 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 V+ ++AS G I A+ IVA ++ GSIGV+ + + +++G+ +VKS Sbjct: 75 RVVASFGNISASGGVYIGVAAESIVANPGTITGSIGVILRGNDLSKVFERIGIRFDTVKS 134 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 K SP ++P+ ++Q+++DSSY FVR+V+E R++ + +DGR+++G + Sbjct: 135 GVYKDILSPDRPLSPEERALLQELIDSSYGQFVRVVAEGRSLTEETVRGFADGRVFSGEQ 194 Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 AK +GL+D +G ++ + L + P+ L + +LL+ + Sbjct: 195 AKTLGLVDELGDEDHARRLAARLADLDETTTRPVTLGKPRKKLMNLLPGSQLIALLQQRL 254 Query: 277 PLMKQTKVQGLWAVWNP 293 L Q LW ++ P Sbjct: 255 SLELMGSGQVLW-LYRP 270 >gi|317010195|gb|ADU80775.1| Signal peptide protease IV (Protease IV) (Endopeptidase IV) [Helicobacter pylori India7] Length = 292 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 60/277 (21%), Positives = 133/277 (48%), Gaps = 7/277 (2%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESAPSAPPNLAKLYLNGAIFSTEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGIMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P + +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQDRLMEL 252 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 + ++ + F + S S+++ Sbjct: 253 SKVKKAYWLEKSPMER---FIEKATQSASNIITQAFG 286 >gi|254423418|ref|ZP_05037136.1| signal peptide peptidase SppA, 36K type [Synechococcus sp. PCC 7335] gi|196190907|gb|EDX85871.1| signal peptide peptidase SppA, 36K type [Synechococcus sp. PCC 7335] Length = 286 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 70/251 (27%), Positives = 126/251 (50%), Gaps = 5/251 (1%) Query: 36 PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 +ARI I G I S + ++E ++ + AL++ + SPGG+ + I+ A++K+ Sbjct: 11 KQIARIEISGAIAGSTRKRVLEALKEVEE-KKFPALLLRIDSPGGTVGDSQEIYSALRKL 69 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + + ++ ++AS G I ++ IVA + GSIGV+ + ++ LDK+GVS K Sbjct: 70 QEKVKIVASYGNISASGGVYIGVGAHHIVANAGCITGSIGVILRGNNIEKLLDKVGVSFK 129 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 VKS P K + + + ++Q+++D SY FVR V+E RN+P K +DGR++ Sbjct: 130 VVKSGPYKDILAFDRPLTSEEETILQELIDVSYGQFVRTVAEGRNLPEAKVREFADGRVF 189 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLKNL-SISSL 271 TG +A +G++D +G +E+ + L D + + K L ++ Sbjct: 190 TGEQALALGMVDRLGSEEDARRWAAELSGLDPEKAECFTFEEKKPLLSRVLPGNDALLGF 249 Query: 272 LEDTIPLMKQT 282 L +P Sbjct: 250 LPAAMPATMAR 260 >gi|145629711|ref|ZP_01785507.1| protease IV [Haemophilus influenzae 22.1-21] gi|144978048|gb|EDJ87827.1| protease IV [Haemophilus influenzae 22.1-21] Length = 308 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 70/256 (27%), Positives = 126/256 (49%), Gaps = 14/256 (5%) Query: 36 PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 +A + + G I D + + + + D+S A+++ ++SPGGSA+A E I Sbjct: 15 NKIAVVNVEGAIIDGESDEENAGGDTIARILRKAQDDNSVKAVVLRVNSPGGSAFASEII 74 Query: 87 FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + + ++ KPVI + MAAS GY IS ++ I+A E ++ GSIG+ +P + + Sbjct: 75 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADENTITGSIGIFTMFPTFENSI 134 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV V ++ + S FS + + Q + Y F+ +VS+ R + + Sbjct: 135 KKIGVHADGVSTTELANT-SAFSPLAKPVQDIYQTEIQYGYDRFLEIVSKGRQLSKTQVD 193 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L+ G++W G++A + GL+D +G E L + ++D++ WF D Sbjct: 194 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 250 Query: 266 LSISSLLEDTIPLMKQ 281 IS+LL DT ++ Sbjct: 251 SLISTLLRDTKKGTQE 266 >gi|260769000|ref|ZP_05877934.1| protease IV [Vibrio furnissii CIP 102972] gi|260617030|gb|EEX42215.1| protease IV [Vibrio furnissii CIP 102972] Length = 616 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 76/281 (27%), Positives = 132/281 (46%), Gaps = 21/281 (7%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGG 78 S + + +A + G I D L + + DD A+++ + SPGG Sbjct: 317 SPTFDMAADDIAVVVASGAIMDGVQPRGTVGGDTLASLLRQARNDDKVKAVVLRVDSPGG 376 Query: 79 SAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 SA+A E I I+ +K KPV+ + +AAS GY IS + + IVA T+L GSIG+ Sbjct: 377 SAFASEVIRNEIEAIKAAGKPVVISMSSLAASGGYWISMSGDQIVAQPTTLTGSIGIFSV 436 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + L+KLG+ V +SP + + ++ +Q ++ YH F+ LV+E R Sbjct: 437 ITTFEKGLNKLGIYTDGVGTSPF-SGVGVTTGLSDGIKDALQMGIEHGYHRFISLVAEHR 495 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPP 255 ++ + ++ GR+WT +A+K+GL+D +G ++ +L ++ +++ P Sbjct: 496 HMSEQEVDKVAQGRVWTAQDAQKLGLVDKLGDFDDAVALAASLAKLDTYNLYWVEEPLSP 555 Query: 256 KNYWFCDL-------KNLSISSLLEDTI-PLMKQTKVQGLW 288 + DL L +SSL+ D + P KQ Sbjct: 556 AQQFLQDLFGQVRVGLGLDVSSLMPDALKPATKQLVSDANL 596 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 94/284 (33%), Gaps = 37/284 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVED-NSPHVARIAIRGQIEDSQ-------- 51 + F+ + +LS+ + +Y S + + + G I + + Sbjct: 19 ITFIRLALTNLIFLLSIAIIYFIYIHAESPTPTVDKASALVLNLSGPIVEQRTYVNPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93 ++++ + D T L+++L P + I +AI + Sbjct: 79 FAGSVLGQDLPKENVLFDIVDTLRYAKDDKQVTGLVLALRDLPETNLTKLRYIAKAINEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ I + V G Y K L+KL V+ Sbjct: 139 KASGKPVYAVGDFYNQSQYYLASYADKIFLSPDGAVMLRGYSAYNLYYKTLLEKLDVNTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-------- 203 + K+ PF +++ A + + + +V V+ +R I Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAARESASRWLTQLWGAYVDDVATNRQIDAKTLTPSMDEF 258 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 +L + K GL+D + +++V L + Sbjct: 259 LALLKQSSGNLADLSLKAGLVDELATRQQVRAELTDVFGSDGDD 302 >gi|317179610|dbj|BAJ57398.1| protease IV [Helicobacter pylori F30] Length = 292 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 125/256 (48%), Gaps = 4/256 (1%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESAPSAPPNLAKLYLNGAIFSAEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKDFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVDDVAKARKLDAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQNRLMEL 252 Query: 241 GVDQSIRKIKDWNPPK 256 + ++ + Sbjct: 253 SKVKKAYWLEKSPMER 268 >gi|326801407|ref|YP_004319226.1| signal peptide peptidase SppA, 67K type [Sphingobacterium sp. 21] gi|326552171|gb|ADZ80556.1| signal peptide peptidase SppA, 67K type [Sphingobacterium sp. 21] Length = 588 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 66/254 (25%), Positives = 119/254 (46%), Gaps = 11/254 (4%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLS 74 Y S + + +A + G I S+ + I + DD A+++ ++ Sbjct: 294 YTSPKTEENGSQNRLAVVYAVGDIVSGEGSDEQIGSERISRAIRTVREDDKVKAVVLRIN 353 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGGS+ A + I++ ++ K KP+I + ++AAS GY I+CA++ I A ++ GSIGV Sbjct: 354 SPGGSSLASDVIWKEVELTKKVKPIIVSMGDVAASGGYYIACAADSIFAQPNTITGSIGV 413 Query: 135 LFQYPYVKPFLDK-LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 P ++ F + LG++ VK+ S + ++Q V+ +Y F + V Sbjct: 414 FGIIPNLQNFFNNKLGITFDEVKTGKYADLMSVNRPLTADERDLIQQEVNKTYDTFTKKV 473 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 + R I + + GR+WTGA+A K+GL+D + E + + K+ + Sbjct: 474 ANGRKISQSQVDSIGQGRVWTGAQAAKIGLVDRLASFNEAITAAARKAKLKD-YKLVSYP 532 Query: 254 PPKNYWFCDLKNLS 267 K+ L + S Sbjct: 533 AMKDPLEAFLGSSS 546 Score = 97.8 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 60/319 (18%), Positives = 118/319 (36%), Gaps = 42/319 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSW------------SSHVEDNSPHVARIAIRGQI- 47 M+ K + + + L T+ + + VE + + R+++ I Sbjct: 1 MKQFFKFVFASMLGVFLSTIIFFFVAIAIMAAIISAASSDKAVEISENSILRVSLNYAIK 60 Query: 48 ---------------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 E++ RI+ D+ +++ + G S + I Sbjct: 61 ERTDRSPFNNVSLPSMNSEKYIGLDEILLRIDAAKNDNRIKGIVLDMDGIGASFATLQEI 120 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 A+ K K K I E + GY ++ ++ + V G+ Q P+ K L+ Sbjct: 121 RDALLKFKESKKFILAYSEGYSMKGYYLASTADKVYLNPEGSVDFRGMAAQLPFFKGTLE 180 Query: 147 KLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 KLG+ + VK K+ PF +++P + + ++S Y +++ VS+SRNIP D Sbjct: 181 KLGIEAQVVKVGTYKSAVEPFILDKMSPANKEQVNSYLNSLYDYYLGNVSKSRNIPMDSL 240 Query: 205 LVLSDG-RIWTGAEAKKVGLIDVVGGQEEVWQSLY-----ALGVDQSIRKIKDWNPPKNY 258 ++D +A L+D + + E+ L I+D+ PK Sbjct: 241 RNIADNYSGRDAEKALNAKLVDGLKYKNEIIDELKVKLGIDKKKKIKSINIEDYTSPKTE 300 Query: 259 WFCDLKNLSISSLLEDTIP 277 L++ + D + Sbjct: 301 ENGSQNRLAVVYAVGDIVS 319 >gi|315180695|gb|ADT87609.1| protease IV [Vibrio furnissii NCTC 11218] Length = 616 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 77/281 (27%), Positives = 132/281 (46%), Gaps = 21/281 (7%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGG 78 S + + +A + G I D L + + DD A+++ + SPGG Sbjct: 317 SPTFDMAADDIAVVVASGAIMDGVQPRGTVGGDTLASLLRQARNDDKVKAVVLRVDSPGG 376 Query: 79 SAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 SA+A E I I+ +K KPV+ + +AAS GY IS + + IVA T+L GSIG+ Sbjct: 377 SAFASEVIRNEIEAIKAAGKPVVISMSSLAASGGYWISMSGDQIVAQPTTLTGSIGIFSV 436 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + L+KLG+ V +SP + + ++ +Q ++ YH F+ LV+E R Sbjct: 437 ITTFEKGLNKLGIYTDGVGTSPF-SGVGVTTGLSDGIKDALQMGIEHGYHRFISLVAEHR 495 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPP 255 ++ + ++ GR+WT +A+K+GL+D +G ++ +L ++ +++ P Sbjct: 496 HMSEQEVDKVAQGRVWTAQDAQKLGLVDKLGDFDDAVALAASLAKLDTYNLYWVEEPLSP 555 Query: 256 KNYWFCDL-------KNLSISSLLEDTI-PLMKQTKVQGLW 288 + DL L ISSL+ D + P KQ Sbjct: 556 AQQFLQDLFGQVRVGLGLDISSLMPDALKPATKQLVSDANL 596 Score = 89.3 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 94/284 (33%), Gaps = 37/284 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVED-NSPHVARIAIRGQIEDSQ-------- 51 + F+ + +LS+ + +Y S + + + G I + + Sbjct: 19 ITFIRLALTNLIFLLSIAIIYFIYIHAESPTPTVDKASALVLNLSGPIVEQRTYVNPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93 ++++ + D T L+++L P + I +AI + Sbjct: 79 FAGSVLGQDLPKENVLFDIVDTLRYAKDDQQVTGLVLALRDLPETNLTKLRYIAKAINEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ I + V G Y K L+KL V+ Sbjct: 139 KASGKPVYAVGDFYNQSQYYLASYADKIFLSPDGAVMLRGYSAYNLYYKTLLEKLDVNTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-------- 203 + K+ PF +++ A + + + +V V+ +R I Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAARESASRWLTQLWGAYVDDVATNRQIDAKTLTPSMDEF 258 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 +L + K GL+D + +++V L + Sbjct: 259 LALLKQSSGNLADLSLKAGLVDELATRQQVRAELTDVFGSDGDD 302 >gi|109948135|ref|YP_665363.1| protease IV [Helicobacter acinonychis str. Sheeba] gi|109715356|emb|CAK00364.1| protease IV [Helicobacter acinonychis str. Sheeba] Length = 292 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 59/277 (21%), Positives = 133/277 (48%), Gaps = 7/277 (2%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I ++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESAPSTPPNLAKLYLNGAIFSTEYFNKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKIPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKDFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++RN+ ++G++++ +A + LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARNLNPKDYKNFAEGKVFSAQKALSLKLIDKISTIKQAQNRLMEL 252 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 + ++ + F + S ++++ + Sbjct: 253 SKVKKAYWLEKSPMER---FIEKATQSATNIITQALG 286 >gi|152996263|ref|YP_001341098.1| signal peptide peptidase SppA, 36K type [Marinomonas sp. MWYL1] gi|150837187|gb|ABR71163.1| signal peptide peptidase SppA, 36K type [Marinomonas sp. MWYL1] Length = 339 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 73/277 (26%), Positives = 128/277 (46%), Gaps = 17/277 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVED---NSPHVARIAIRGQI-----EDSQELIERIE 58 +I R+ L++ V + S+ +D VA I +RG I +S E + ++ Sbjct: 60 RIFFRFTTLAIFLAVVGGWFAKSNFQDVSLEGDIVAMIPMRGVIGADNEIESSEFVGLLD 119 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLIS 115 ++ +++ ++SPGGS I+ AI+ + P I V +MAAS GY I+ Sbjct: 120 AAYQNSRLKGVVIEMNSPGGSPVHSGIIYDAIRAKEQNYPDIPVLVVVEDMAASGGYYIA 179 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A+N I A + SLVGSIGV+ L+K+GV ++ + KA PF+ + +A Sbjct: 180 SAANEIYADKASLVGSIGVISSGFDASNLLEKIGVERRTFTAGRNKAFLDPFAPMTEEAK 239 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q V+D ++ F+ V E R T + G ++TG++A K+GLID + ++ Sbjct: 240 VKWQAVLDETHQQFINAVKEGRGDRLVITDDVFSGMVFTGSQAIKIGLIDGLASVTDILD 299 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 + + + + P ++ W K + Sbjct: 300 TRF------PDAEPVVYEPKQDSWKELAKEFGVEMAT 330 >gi|78485488|ref|YP_391413.1| peptidase S49 [Thiomicrospira crunogena XCL-2] gi|78363774|gb|ABB41739.1| S49 peptidase family protein [Thiomicrospira crunogena XCL-2] Length = 312 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 66/275 (24%), Positives = 125/275 (45%), Gaps = 16/275 (5%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVE--DNSPHVARIAIRGQIE-----DSQELIERIERI 60 +K ++ +VTL ++ ++S + S HVA + + G I ++ L + Sbjct: 34 LKLSVILYIIVTLVMLASQFTSEEDVLSGSKHVAVVKLEGAIMPGSRTSAETLNPLLNSA 93 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCAS 118 ++ ++ A+I+ +SPGGS I I ++K KPV V ++ AS Y I+ A+ Sbjct: 94 FKNPNSQAVIIKANSPGGSPVQSALINDEITRLKTLYNKPVYVVVEDLCASGCYYIAVAA 153 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I A + S++GSIGV V ++K+G+ +S+ + KA PFS + Q Sbjct: 154 DKIYANKGSIIGSIGVRMDTFGVTGLMEKMGIENRSMHAGEHKAFIDPFSPKDESGRQFF 213 Query: 179 QDVV-DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 Q+ + + ++ F+ V + R + G +W G EA K G+ID +G V + + Sbjct: 214 QERILERTHQQFIEAVRKGRGDRIKENENTYTGLVWLGDEAVKNGMIDGLGDIGYVKREI 273 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 + + K + + ++S + Sbjct: 274 IKQTN------TRHYEAEKTFMEQLMGDISSETAT 302 >gi|313623585|gb|EFR93759.1| putative signal peptide peptidase SppA [Listeria innocua FSL J1-023] Length = 337 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 71/274 (25%), Positives = 134/274 (48%), Gaps = 19/274 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76 E + +A +++ G I+D+ E ++++E + +D+ +++ ++SP Sbjct: 56 EEGGADTIAVLSVDGTIQDTGEAGSLFSETGYNHTFFMDQLEEVRNNDAIQGVLLYVNSP 115 Query: 77 GGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG I I ++K + P + MAAS GY IS ++ I A++ +L GS+GV Sbjct: 116 GGGVMESAQIRDKILQIKKERKIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + Q + KLGVS ++KS K S + + ++MQ ++D SY+ FV++V+ Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGAYKDIMSGTRPMTDEEKKIMQSMIDDSYNEFVKVVA 235 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 R + ++ ++DGRI+ G +AK+ GLID G QE+ ++L + I+ P Sbjct: 236 TGRGMSEEQVRKIADGRIYDGRQAKENGLIDAFGYQEDALEALKKEKDLKDATVIQYDAP 295 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 F L +++ + + + K+ G Sbjct: 296 ES---FSSLFSVAAQKMTGQNADITQLIKLTGTL 326 >gi|126668129|ref|ZP_01739091.1| peptidase, putative [Marinobacter sp. ELB17] gi|126627399|gb|EAZ98034.1| peptidase, putative [Marinobacter sp. ELB17] Length = 341 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 64/274 (23%), Positives = 115/274 (41%), Gaps = 14/274 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 + K T + +V L H A I + G I + ++ + Sbjct: 57 IFFKFLTFAYLFGIVLLFKFPLGQGLESATGGMHTAVIGVDGPIAADELASADNIVSSLR 116 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLIS 115 + A A+I+ ++SPGGS ++ I+++ K V + ++ AS Y I+ Sbjct: 117 AAFVEPDAAAVILRINSPGGSPVQSGYVYDEIKRLRTEYPDKKVYAVISDIGASGAYYIA 176 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I A SLVGSIGV+ + KLGV + + K PFS P+ V Sbjct: 177 SAADEIYANRASLVGSIGVVAGGFGFTEVMGKLGVERRLYTAGESKGFLDPFSAEKPEEV 236 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q V+++++ F+ V + R + G IW+G +A ++GLID +G V + Sbjct: 237 AFWQSVLENTHGQFIAAVQQGRGDRLADDPRVFSGLIWSGEQALELGLIDGLGSASYVAR 296 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 + + D++ ++ + L +S Sbjct: 297 QIVGH------ENLVDYSRARSPLRNLMDQLGVS 324 >gi|328797928|dbj|BAH10025.2| probable peptidase [Pseudomonas putida] gi|328797942|dbj|BAC41612.2| probable peptidase [Pseudomonas resinovorans] Length = 311 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 72/296 (24%), Positives = 132/296 (44%), Gaps = 24/296 (8%) Query: 6 KKIKTRY----VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIER 56 ++ K + + + + V + V + P A+I +RG I D +E L Sbjct: 23 RRWKNFFRLATLGIVVTAFVVGGRADLDGVGADVPVTAKIKVRGVIADGEEASAENLKRS 82 Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYL 113 + + +++ A+I+ ++SPGGS ++ ++++ V + ++ AS GY Sbjct: 83 LGKAFENENTKAVILEINSPGGSPVQAGHVYDEVRRLRALHPDTKVYAVITDLGASGGYY 142 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 I+ A++ I A + SLVGSIGV + KLGV ++ S KA F NP+ Sbjct: 143 IASAADEIFADKASLVGSIGVTAASFGYVELMQKLGVERRAYTSGEHKAFLDQFQPQNPE 202 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + + V+ ++++ F+R V R + L G IWTG +A +GL+D +G + Sbjct: 203 ERKFWEGVLKTTHNQFIRSVEAGRGDRLKAKENPDLYSGLIWTGEQAVGLGLVDRLGDSD 262 Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 V + + + KI D+ +N + S + D + L + GL Sbjct: 263 YVAREVVG------VSKIVDFTRKQNPLDRFASKIGAS--VADQLSL--RLGFDGL 308 >gi|330830951|ref|YP_004393903.1| signal peptide peptidase SppA, 67K type [Aeromonas veronii B565] gi|328806087|gb|AEB51286.1| Signal peptide peptidase SppA, 67K type [Aeromonas veronii B565] Length = 614 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 69/278 (24%), Positives = 121/278 (43%), Gaps = 13/278 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSL 73 + + + V + G I D L + + RDD A+++ + Sbjct: 311 LAAIPEQYPQSGKDEVGLVVASGAIMDGVQPAGTIGGDSLSDLLADARRDDQVKAVVLRV 370 Query: 74 SSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 SPGGSA+A E I + + + KPV+ + AAS GY IS ++ I A+ T+L GSI Sbjct: 371 DSPGGSAFAAEQIRAELLALKQAGKPVVVSMGSYAASGGYWISADADKIFASPTTLTGSI 430 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GV + + L + GV V ++ P + Q +Q V+ +Y F+ L Sbjct: 431 GVFGMFATIDKALAQFGVHTDGVGTTDY-VGVGPTRALPDHVGQAIQLSVEDTYQRFIGL 489 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS--IRKIK 250 VS+ R + ++ ++GR+WTG +AK +GL+D G ++ ++ L + + I+ Sbjct: 490 VSKGRGLSPEEAEKAAEGRVWTGEDAKALGLVDEFGNLDDAIKAAAELANLKEWQVTPIE 549 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 K+ + L + S L + + L Sbjct: 550 QEESTKDKFLRQLFDSSAQVLAPQLQSWLPAGFGKALV 587 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 100/283 (35%), Gaps = 38/283 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + F + + + L +V + V S + + + G + + + Sbjct: 18 LNF-TRLMLVNLLFLIVVLVIVFSVSQKEAPKAPIEGALTLNLNGVLVEQRSQTDPTVQL 76 Query: 52 -----------------ELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKV 93 +L+ I+ D+ AL++ G+ + + AI Sbjct: 77 LRQMDSSDEQPSEIVLSDLLWAIKSAKDDERIKALVIKPQGLQGANFTKLQEVASAIDSF 136 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + + + + YL++ ++ ++ ++ V G+ Y K L+KL ++ Sbjct: 137 RESGKPVIAMADFYTQGQYLLAAHADHVLLNQSGAVVIEGLGVYQTYFKSALEKLNITPH 196 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT------- 204 K K+ P+ E++P++ + Q +D + +V V+E R I D Sbjct: 197 VFKVGTYKSFVEPYTRDEMSPESKEANQRWLDQLWQSYVADVAEQREIEPDAVAPGKERF 256 Query: 205 -LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 +L A GL+D + ++E+ Q++ + Sbjct: 257 LELLRKAGGNAANYALDNGLVDQLATRDEMTQAVIKEVGEADD 299 >gi|317181116|dbj|BAJ58902.1| protease IV [Helicobacter pylori F32] Length = 292 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 127/256 (49%), Gaps = 4/256 (1%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESAPSAPPNLAKLYLNGAIFSTEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P + +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ +A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQNRLMEL 252 Query: 241 GVDQSIRKIKDWNPPK 256 + ++ + Sbjct: 253 SRVKKAYWLEKSPMER 268 >gi|258404286|ref|YP_003197028.1| signal peptide peptidase SppA, 36K type [Desulfohalobium retbaense DSM 5692] gi|257796513|gb|ACV67450.1| signal peptide peptidase SppA, 36K type [Desulfohalobium retbaense DSM 5692] Length = 296 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 62/263 (23%), Positives = 120/263 (45%), Gaps = 1/263 (0%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 F I + Y+S + +RG + +++ + IE + + Sbjct: 15 FGFMLIAAAVALFMGAMAAFSYWSGQGGGWGQPQI-GVVHVRGVLTNARPVTHWIETLRQ 73 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 + ++V ++SPGG + ++ A+ + KPV+ + +AAS GY ++ + I Sbjct: 74 KNRVKGVLVRINSPGGVVAPSQEVYSAVSSLAEDKPVVVSMGSVAASGGYYVAVGAPTIF 133 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A ++ GSIGV Q K LDKLG+ ++V S P+K S + + MQ +V Sbjct: 134 ANPGTITGSIGVKAQLKNFKGLLDKLGIEDETVVSGPLKDATSAAKPMTEAERKYMQGMV 193 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 D + FV+ +++ R++ + L+DGR +TG +AK +GL+D +G ++ L Sbjct: 194 DDMHAQFVQAIAKGRDMDLEVVRRLADGRAYTGRQAKDLGLVDALGSMQDALDVLRHKAQ 253 Query: 243 DQSIRKIKDWNPPKNYWFCDLKN 265 + + + + + L + Sbjct: 254 VGTDYALVEGPERERSLWQWLLS 276 >gi|237731223|ref|ZP_04561704.1| protease 4 [Citrobacter sp. 30_2] gi|226906762|gb|EEH92680.1| protease 4 [Citrobacter sp. 30_2] Length = 618 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 74/271 (27%), Positives = 121/271 (44%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETPGNVGGDTTAAQIREARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + K KPV+ + MAAS GY IS ++ IVA ++L GSIG+ Sbjct: 379 VSASEVIRAELAAAKAAGKPVVVSMGGMAASGGYWISTPASYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+ QMMQ +++ Y F+ LV+++R Sbjct: 439 NTVENSLDSIGVHTDGVATSPLAD-ISITKALPPEVQQMMQLSIENGYKRFITLVADARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L I+ + Sbjct: 498 TTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHIEYY--QDEP 554 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 F D+ S+S + +P Q + A Sbjct: 555 TFVDMVMDSMSGSVRAMLPEAIQAMLPAPLA 585 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S S+ E + I G I D Sbjct: 19 LNFVREFVLNLFFIFLVLVGVGIWMQVSSSNTSEHAERGALLLDISGVIVDKPSSTSRLS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G+ + I +A+ Sbjct: 79 VIGRQLFGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGADQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V + + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPVFAVGDNFSQGQYYLASFANKIYLSPQGSVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLDTVAANRQIPAQQVFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + DG T A L+D + EV + L K Sbjct: 259 QAMLDGLTKVDGDTAKYALDNKLVDALASSAEVEKMLTKQFGWSKADK 306 >gi|304322140|ref|YP_003855783.1| protease IV, a signal peptide peptidase [Parvularcula bermudensis HTCC2503] gi|303301042|gb|ADM10641.1| protease IV, a signal peptide peptidase [Parvularcula bermudensis HTCC2503] Length = 643 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 64/267 (23%), Positives = 120/267 (44%), Gaps = 14/267 (5%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLS 74 S D +A + + G I D E + ++R A+++ + Sbjct: 332 LSMPVSDPHDKDDKIAVVTVAGAIVDGDERSGAAGGDAVALELKRARTRKDVKAVVLRVD 391 Query: 75 SPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 SPGGS +A E I + VK KPVI + +AAS GY IS ++ I ++ ++ GSIG Sbjct: 392 SPGGSVFASEVIRDEVLAVKAAGKPVIVSMGSLAASGGYWISANADEIWSSPVTITGSIG 451 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP-FSEVNPKAVQMMQDVVDSSYHWFVRL 192 V +P + ++G+S V ++P+ + + +++Q V+ Y F+ L Sbjct: 452 VFSFFPTFEESFAEIGISTDGVGTTPLTGIYATGVGPLPEAYGEIIQASVEEIYGRFLGL 511 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--- 249 V+E R + D ++ GR+W+G +A+++GL+D +G ++ S + I Sbjct: 512 VAEGREMTPDGVDSIAQGRVWSGLDAQRLGLVDRLGTLDDALASAAEKAGLEDYAVIGLT 571 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTI 276 ++ P + + + DT+ Sbjct: 572 RERTPFERFLEGLAGRDDGITGEADTL 598 Score = 70.0 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 82/226 (36%), Gaps = 15/226 (6%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSS---PGGSAYAGEAIFRAIQKVKNRKP 98 + G +L+ + + DD +++ L P GSA + ++KV+ Sbjct: 99 PVEGP-VSLHDLVAVLRSAAEDDRINVVVLDLQGLFIPSGSASKAHYLADEVEKVRAAGK 157 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 + + + YL++ A++ I+ + +V G Y+ L+KL V+ + Sbjct: 158 QVIAIGDYYTQEQYLVAAAADEILLHDFGMVAIEGYGAYNTYLAEALEKLKVTAHVFRVG 217 Query: 159 PMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTG 215 KA PF ++++ +A + + + + V R++ + Sbjct: 218 TFKAAVEPFLRNDMSAEAKEANIAYLSDLWSAYADKVDARRDVTVSGGVKEYAAQFPALM 277 Query: 216 AEAK--------KVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 A + GL+D + + + ++ ++K + Sbjct: 278 RAAGNNAAKAALEAGLVDQLMDRPSQIAHIASIVGRDEKSELKGFR 323 >gi|317970537|ref|ZP_07971927.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp. CB0205] Length = 270 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 72/260 (27%), Positives = 134/260 (51%), Gaps = 5/260 (1%) Query: 33 DNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + +ARIAI G I + +++ + + + + AL++ + SPGG+ + I A+ Sbjct: 8 KSRRKLARIAIEGPIASGTRKRVLKALREVEKRE-FPALLLRIDSPGGTVGDSQEIHAAL 66 Query: 91 QKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++ + VI ++AS G I A++ IVA S+ GSIGV+ + + L+++G Sbjct: 67 LRLREKQCKVIASFGNISASGGVYIGVAADKIVANPGSITGSIGVILRGNNLSRLLERIG 126 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + ++VKS K SP ++ Q++Q+++DSSY FV V+E R + D+ +D Sbjct: 127 IQFETVKSGIYKDILSPDRALSSGERQVLQELIDSSYGQFVSAVAEGRGLSEDEVRRFAD 186 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSI 268 GR+++GA+A+++GL+D +G +E+ + L K + K + + S Sbjct: 187 GRVFSGAQAQELGLVDALGDEEQARRLACELAELDLEKTKPITFGQEKKRFAGVIPGRSQ 246 Query: 269 SSLLEDTIPLMKQTKVQGLW 288 SL + L + Q LW Sbjct: 247 ISLALQWLKLELSSSGQPLW 266 >gi|317182638|dbj|BAJ60422.1| protease IV [Helicobacter pylori F57] Length = 292 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 126/256 (49%), Gaps = 4/256 (1%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESAPSTPPNLAKLYLNGAIFSTEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGIMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P + +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQNRLMEL 252 Query: 241 GVDQSIRKIKDWNPPK 256 + ++ + Sbjct: 253 SKVKKAYWLEKSPMER 268 >gi|158333242|ref|YP_001514414.1| signal peptide peptidase SppA [Acaryochloris marina MBIC11017] gi|158303483|gb|ABW25100.1| signal peptide peptidase SppA, 36K type [Acaryochloris marina MBIC11017] Length = 273 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 76/272 (27%), Positives = 134/272 (49%), Gaps = 10/272 (3%) Query: 30 HVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + +AR+ I+G I + + ++E ++ I L++ + SPGG+ I+ Sbjct: 4 PFKGARKQIARLEIKGAIAGATRKHVLEALKTIEE-KGYPVLLLRIDSPGGTVVDSHEIY 62 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 A+ K++ + ++ ++AS G I + I+A ++ GSIGV+ + ++ LDK Sbjct: 63 SALIKLREKIKIVASFGNISASGGVYIGMGAEHIMANPGTITGSIGVILRGNNLERLLDK 122 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 +GVS K +KS P K + E+ Q++QD++DSSY FV +V+E RN+ D Sbjct: 123 VGVSFKVIKSGPYKDILAFDRELTEPERQILQDLIDSSYSQFVEIVAEGRNLEVDAVKQF 182 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLKNL 266 +DGR++TG +A ++GL+D +G +E+ L D K K++W L Sbjct: 183 ADGRVFTGQQALELGLVDRLGTEEDARCWAAELAGLDPEKAKCNTIEEHKSFWSKLLPGS 242 Query: 267 SISSL-----LEDTIPLMKQTKVQGLWAVWNP 293 SS + D + T LW ++ P Sbjct: 243 RQSSWSVPPQVADWVNFEIATNGLPLW-LYRP 273 >gi|309790773|ref|ZP_07685320.1| signal peptide peptidase SppA, 36K type [Oscillochloris trichoides DG6] gi|308227192|gb|EFO80873.1| signal peptide peptidase SppA, 36K type [Oscillochloris trichoides DG6] Length = 342 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 71/274 (25%), Positives = 119/274 (43%), Gaps = 14/274 (5%) Query: 33 DNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 V I + G I +++ +I++ ++D A+++ + SPGG A Sbjct: 70 SGLDRVVIIEVSGTIGVASDPFGSSLGQNDILSQIKQAAKDPLVRAVVLRVDSPGGGVVA 129 Query: 83 GEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 I + K++ K ++ + AAS GY IS + I A + + GS+GV+ Sbjct: 130 SSEIHAELVKLREAGKTLVVSMGATAASGGYYISAPAERIYANKDTFTGSLGVILSLTNY 189 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 D LG+ KS +K SP E + ++Q VVD +Y FV ++ E R +P Sbjct: 190 GEAFDNLGLKSYVYKSGNLKDIGSPLREPTAEENAVLQRVVDEAYQGFVDVIVEGRGLPR 249 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ L ++DGRI+TGA+A ++GL+D +G EE L + + + Sbjct: 250 ERVLEIADGRIYTGAQALELGLVDELGNLEEAIAGAMELANL-DSALVVRYTSSSSLRSL 308 Query: 262 DLKNLSISSLLEDTIPL--MKQTKVQGLWAVWNP 293 L LS D + L + L W P Sbjct: 309 LLSRLSAPQATSDPLGLRNITDPPAPVLEYRWRP 342 >gi|299822749|ref|ZP_07054635.1| signal peptide peptidase SppA [Listeria grayi DSM 20601] gi|299816278|gb|EFI83516.1| signal peptide peptidase SppA [Listeria grayi DSM 20601] Length = 338 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 68/276 (24%), Positives = 134/276 (48%), Gaps = 19/276 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSS 75 D +A +++ G I+D+ + ++++I D S +++ ++S Sbjct: 56 EEGDGDARIAVLSVDGTIQDTGEASSLFGSSGYNHAAFMRQLKQIEADKSVKGILMYVNS 115 Query: 76 PGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 PGG I + ++K ++ PV + MAAS GY IS A++ I A++ +L GS+G Sbjct: 116 PGGGVMESAQIRDKLLEIKKKRKLPVYVSMGSMAASGGYYISTAADKIFASKETLTGSLG 175 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V+ Q + K+G+S ++KS K S + + ++MQ +++ SY FV ++ Sbjct: 176 VIMQGYDYSGLMKKVGISDNTIKSGAHKDIMSSSRPMTKEEKKIMQQMINDSYDEFVNVI 235 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 + R++ +K ++DGR++ G +AKK+GLID G +E+ ++L Q + Sbjct: 236 ATGRHMSKEKVRKIADGRVYDGRQAKKIGLIDQFGYKEDAIRALKKEKGLQDADV---FE 292 Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + L + S+ ++ L+ K+ G + Sbjct: 293 YQQTGGIESLFSASVKGIVSPNAELLSFLKMSGNIS 328 >gi|238897852|ref|YP_002923531.1| protease IV, a signal peptide peptidase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465609|gb|ACQ67383.1| protease IV, a signal peptide peptidase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 614 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 69/296 (23%), Positives = 137/296 (46%), Gaps = 18/296 (6%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDS 65 + +++ N +A I + G I D ++ I + + Sbjct: 306 FNFISIYEYNLKLKIDPTKNDHQIAVIFVNGMITDGLKTPNNVGGEDAAYEIRQARLNPK 365 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAA 124 A+I+ ++SPGGS A E I + + +KP++ + + AS GY IS ++ I+A+ Sbjct: 366 IKAVILRVNSPGGSVSASELIRSELATLHEAKKPLVVSMGGLGASGGYWISTPADYIIAS 425 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 ++L GSIG+ + L +GVS V +SP+ ++ S ++P+ ++MQ V++ Sbjct: 426 PSTLTGSIGIFGVINTFENSLKSIGVSTDGVSTSPL-SDISITKNLSPEFSKIMQMNVEN 484 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 Y FV+LV+ +R+ + ++ GR+WTG +AK GLID +G ++ + L + Sbjct: 485 GYKTFVKLVAAARHQDPKQIDSIAQGRVWTGLDAKNNGLIDQLGDFDDAVEKAAELANLK 544 Query: 245 SI--RKIKDWNPPKNYWFCDL-----KNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 + + D ++ F + + S L D + + + + ++ +P Sbjct: 545 NYQLYQFGDQLNFRDMLFDQINAALPFAFKMQSPLSDIVSIFNRHSPDFVQSLKDP 600 Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 104/301 (34%), Gaps = 44/301 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + F+ + +L ++ + Y + + + + + G ++D Sbjct: 19 INFMRVLVLNLCFLLLIIIGVMTYLHFQNKPLEPVKGALLVDLTGVVQDKPATNTLFRQW 78 Query: 52 ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92 ++++ + + D++ L++SLS + I +A+ + Sbjct: 79 SKKLLERDKNKLQENSLFDIVDMLRQAKVDNNINGLVLSLSHLIAIDQPSLQYIGKALLE 138 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 + I + + Y ++ +N I + V G Y K +DKL ++ Sbjct: 139 FRETGKPIYAIGDSYTQEQYYLASFANKIYLSPQGTVDIHGFATHQLYYKSLIDKLKINS 198 Query: 153 KSVKSSPMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203 + K+ PF +++P A + Q + + ++ +V+++R++ ++ Sbjct: 199 HIFRVGTYKSAVEPFMRDDMSPDAREADQRWIHQLWRNYLEVVAKNRHLTAEQFFPAIPE 258 Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPK 256 L T A +D + + EV + L D + I ++N Sbjct: 259 LLSRLEANGGNTAQYALNNKWVDQLASRSEVEKELVRVFGWDQKNEDFNFISIYEYNLKL 318 Query: 257 N 257 Sbjct: 319 K 319 >gi|34497270|ref|NP_901485.1| serine protease [Chromobacterium violaceum ATCC 12472] gi|34103126|gb|AAQ59489.1| serine protease [Chromobacterium violaceum ATCC 12472] Length = 312 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 68/282 (24%), Positives = 113/282 (40%), Gaps = 12/282 (4%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDN-----SPHVARIAIRGQIED----SQELIERI 57 KI R L ++ L + H A I + G I +++I + Sbjct: 30 KIFFRLAWLLVIGLIAASVFMRGEEKSGASLTGGGHTAVIELDGAISSENETGKKMISAL 89 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLI 114 + RD +I+ +SPGGS ++ I+++ PV V E+ AS Y I Sbjct: 90 DHAFRDKGTKGVIIDANSPGGSPVLSGMVYDEIRRLKKLHADIPVYVVVSEVCASGCYYI 149 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I + S+VGSIGVL ++KLG+ + + KA PFS NPK Sbjct: 150 AAAADKIFVDKASIVGSIGVLSDGFGFTGAMEKLGIDRRLKTAGENKAMGDPFSPPNPKH 209 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 + Q ++D +H F++ V R K G +W G +A +GL D G V Sbjct: 210 DAIRQQLLDDIHHQFIQAVETGRGQRLKKDAQTFSGMVWLGEKAIPLGLADGYGTVASVA 269 Query: 235 QSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 + + + D++ + SL + + Sbjct: 270 RDVVKAQKTVDFTQQDDFSSRVARRIGVEFAGGVKSLFDAKL 311 >gi|315303364|ref|ZP_07873981.1| putative signal peptide peptidase SppA [Listeria ivanovii FSL F6-596] gi|313628267|gb|EFR96783.1| putative signal peptide peptidase SppA [Listeria ivanovii FSL F6-596] Length = 337 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 70/274 (25%), Positives = 130/274 (47%), Gaps = 19/274 (6%) Query: 37 HVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSPGGSAYA 82 +A +++ G I+D+ E ++++E+I D+S +++ ++SPGG Sbjct: 62 KIAVLSVDGTIQDTGESSSLFGDAGYNHTFFMDQLEQIRDDESIRGVLLYVNSPGGGVME 121 Query: 83 GEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 I I ++K + P + MAAS GY IS ++ I A++ +L GS+GV+ Q Sbjct: 122 SAQIRDKILQIKKERSIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGVIMQGYD 181 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + KLG+S ++KS K S + ++MQ ++D SY+ FV++V+ R + Sbjct: 182 YSELMKKLGISDNTIKSGTHKDIMSATRPMTEDEKKIMQSMIDDSYNEFVQVVASGRGMS 241 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ ++DGRI+ G +AK GLID G QE+ +L + ++ P F Sbjct: 242 EEQVRKIADGRIYDGRQAKANGLIDEFGYQEDALAALKKEEKLSNASVVQYDEPTSFGSF 301 Query: 261 ---CDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 K ++ + I L + + ++ Sbjct: 302 FSVATQKMTGQNADITQLIKLTGTLQAPRMMYLY 335 >gi|50121267|ref|YP_050434.1| protease 4 [Pectobacterium atrosepticum SCRI1043] gi|49611793|emb|CAG75242.1| protease IV [Pectobacterium atrosepticum SCRI1043] Length = 616 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 66/267 (24%), Positives = 121/267 (45%), Gaps = 14/267 (5%) Query: 33 DNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAG 83 N+ +A + G I D +I D AL++ ++SPGGS A Sbjct: 321 QNNNQIAVVFANGAIIDGPETPGMVGGDTTAAQIRAARLDPKVKALVLRVNSPGGSVTAS 380 Query: 84 EAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + + KP++ + MAAS GY IS +N I+++ ++L GSIG+ + Sbjct: 381 ELIRSELMSLRMAGKPIVVSMGGMAASGGYWISTPANAIISSASTLTGSIGIFGVITTFE 440 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+ LGV V +SP+ S + P+ QMMQ ++ Y F+ +V+++R + Sbjct: 441 DSLESLGVHTDGVATSPLADLSITKS-LPPEFSQMMQLSIERGYKNFIDIVAQARKKTPE 499 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + ++ G +W G++AK+ GL+D +G ++ + L ++ + Sbjct: 500 QINEIAQGHVWVGSDAKENGLVDQIGDFDDAVKKAAELAKL-GQYQLNWYAEQPGLLDTM 558 Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWA 289 L ++ S +P+ Q+ + A Sbjct: 559 LNQVNASVY--ALLPVAVQSMLPAPVA 583 Score = 92.8 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 100/277 (36%), Gaps = 38/277 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + F+ + I +++ ++ +Y + E + + + G + D Sbjct: 19 LNFIREFILNIFLIALILAGVGIYSQVKTTPEAATKGALLVDLTGVVVDQPTVNNKLRQL 78 Query: 52 ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92 ++++ I + DD+ T +++ LS G+ + I +A+++ Sbjct: 79 GREFFGASSNRRQENSLFDIVDSIRQAKGDDNITGMVLDLSDFTGADQPSLQYIGKALRE 138 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 ++ I V + + Y ++ +N + V G Y K LDKL V+ Sbjct: 139 FRDSGKPIYAVGDSYNQSQYYLASFANTVSLTPQGSVDLHGFATNNLYFKSMLDKLKVTT 198 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203 + K+ P+ +++P A +++ + ++ VS +R I + Sbjct: 199 NIFRVGTYKSAVEPYLRDDMSPAARDADGRWINALWQQYLNTVSANRQITPQQLFPGATS 258 Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L + T A L+D V + QSL Sbjct: 259 IIAGLQAVQGDTARYALDNKLVDEVASRSVTEQSLVK 295 >gi|114567921|ref|YP_755075.1| periplasmic serine protease [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338856|gb|ABI69704.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 297 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 73/272 (26%), Positives = 140/272 (51%), Gaps = 15/272 (5%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-----------ELIERIERISRDDSA 66 +++ V + + +A + I G I +++E I + + + Sbjct: 20 LSIRAVNRLDHGSTREGTATIAVVQINGPISGVSSWLENSSSTAGDIMEAIRKAGKREDI 79 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAE 125 A++V + SPGGSA A + I +++++ + KPV+T + ++ AS GY I+C+++ IVA Sbjct: 80 KAVVVRIDSPGGSAGASQEIAMELERLREKGKPVVTSMGDVCASGGYWIACSTDHIVANG 139 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 SL GSIGV+ Q ++ KLG+ +++KS K S E++ + +++QD+VD S Sbjct: 140 ASLTGSIGVIMQLSNLEGLYGKLGIRNQTIKSGEHKDMGSTSRELSAEEEKILQDLVDDS 199 Query: 186 YHWFVRLVSESRNIPY--DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 Y F+ V + R DK L ++DGRI+TG +A ++GL+D +G + + + Sbjct: 200 YQQFLEQVQKGRQEKIAADKLLEIADGRIFTGKQALELGLVDSLGNYYDAVRQAEKMAGI 259 Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 + K++ N ++W ++ +L + Sbjct: 260 KGESKLEVINAF-SWWERLKLDMFNPNLFQQG 290 >gi|253996198|ref|YP_003048262.1| peptidase S49 [Methylotenera mobilis JLW8] gi|253982877|gb|ACT47735.1| peptidase S49 [Methylotenera mobilis JLW8] Length = 332 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 66/275 (24%), Positives = 117/275 (42%), Gaps = 14/275 (5%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERIS 61 K+ L+ L +++ + H A I I G I + +I ++ Sbjct: 46 FFKSLTFGYLLIFLLMLFGIMGGDKKSLEAHTALIEINGVIQAGGDVTADAVISSLKEAY 105 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAGYLISCAS 118 + +I+ ++SPGGS I I++ + PV V ++ AS GY I+ A+ Sbjct: 106 DNKGTKGIILRVNSPGGSPVQAGIINDEIRRQKTLHPSIPVYAVVEDICASGGYYIAAAA 165 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I + S+VGSIGVL + K+GV + + + KA PFS VNP ++ Sbjct: 166 DKIYVDKASIVGSIGVLMDGYGFTEAMKKVGVERRLMTAGENKAMLDPFSPVNPHHQELA 225 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 Q +++ + F +V + R +T G W+G ++ K+GL D +G E V + + Sbjct: 226 QAMLNEIHEQFKTVVRQGRGARLKETPETFSGLFWSGEQSIKIGLADGMGSAEYVAREVI 285 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273 I D+ ++ K + S+ Sbjct: 286 KQ------EDIVDFTYQDDFASRIAKRIGASASAA 314 >gi|149176651|ref|ZP_01855263.1| Periplasmic serine protease [Planctomyces maris DSM 8797] gi|148844530|gb|EDL58881.1| Periplasmic serine protease [Planctomyces maris DSM 8797] Length = 603 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 68/289 (23%), Positives = 125/289 (43%), Gaps = 19/289 (6%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE---------------DSQELIERIERI 60 + + ++ SS + P +A I G I S I+ + + Sbjct: 288 LIKLMDLLAGIDSSQRIGSGPRIAVIYATGAIMSGSSAQGSLLGGNVLGSDTFIKAVHKA 347 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + DD A++V + SPGGSA A + ++RA+++ KP++ + ++AAS GY IS + Sbjct: 348 ADDDQVKAIVVRVDSPGGSALASDLMWRALEE--AGKPIVVSMGDVAASGGYYISMGAER 405 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 I A +L GSIGV+ ++ K+G++ + SP + + Sbjct: 406 IFAEPGTLTGSIGVVGGKLAIEGLYKKIGITTSVISRGSNSGTFSPLNGFTESERVAVTG 465 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 ++++ Y F + R + Y+K L+ GR++TG A K+GL+D +G +E L Sbjct: 466 MLNAIYKQFTEKAAAGRKMDYNKLEALARGRVYTGEMALKLGLVDQLGTLDEAIDHARKL 525 Query: 241 GVDQSIRKIKDWNPPK--NYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 G + K + P+ + + + + I M + GL Sbjct: 526 GKIKEGEKFEKLILPRPTSPFEQIFGPVDGDTQQHQQISRMLDSLAPGL 574 Score = 99.3 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 108/245 (44%), Gaps = 3/245 (1%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 +++ R+E+ S D S T +++ + +AIQKV+ + E Sbjct: 68 SLSKVVSRLEKASEDKSLTGVVLHFKGTELGWAKLNELRQAIQKVRKSDKKVFAWIETGM 127 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 + YLI+ A + IV E++ + +G+ + + K D L + ++ K+ P++ Sbjct: 128 TKDYLIASACDQIVMPESASLILLGLRAEVSFYKNLFDILDIKPDILRVGKYKSAAEPYT 187 Query: 169 --EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 E++ + M+ ++D+ + ++S SR + +K +G + AEAKK+GLID Sbjct: 188 RTEMSEAFREEMEALLDNYFGQITGMISASRGLSAEKVEAAINGGPYMAAEAKKLGLIDH 247 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPK-NYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 + ++++ + L ++ IK + + + F + L L I ++ Sbjct: 248 IAYEDQLPKLLTGEDSKNEVKLIKKYAKKRADTDFSGIAGLIKLMDLLAGIDSSQRIGSG 307 Query: 286 GLWAV 290 AV Sbjct: 308 PRIAV 312 >gi|148980157|ref|ZP_01815908.1| protease IV [Vibrionales bacterium SWAT-3] gi|145961375|gb|EDK26682.1| protease IV [Vibrionales bacterium SWAT-3] Length = 607 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 74/274 (27%), Positives = 124/274 (45%), Gaps = 16/274 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 + S VA I G I D + + DD A+++ + SPGGS Sbjct: 309 PDMNSESHDVAVIVASGAIMDGKQPRGTVGGDTTAALLRQARNDDKVKAVVLRVDSPGGS 368 Query: 80 AYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A+A E I I+ + + KPV+ + +AAS GY IS ++ I+A T+L GSIG+ Sbjct: 369 AFASEVIRNEIEAIKQAGKPVVVSMSSLAASGGYWISMGADKILAQPTTLTGSIGIFSVI 428 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L+ +GV V +SP + + A Q ++ Y F+ LV E+R Sbjct: 429 TTFEKGLNDIGVYTDGVGTSPFSGLGIT-TGLTEGAKDAFQMGIEHGYRRFIGLVGENRG 487 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256 + D ++ GR+WTG +A + GL+D +G ++ S +L + +I +++ Sbjct: 488 MDVDAVDKIAQGRVWTGQDAMQNGLVDEIGDFDDAIASAASLAELESYNIYWVEEPLSAT 547 Query: 257 NYWFCDLKN---LSISSLLEDTIPLMKQTKVQGL 287 + + N +SI ++ IP Q Q L Sbjct: 548 EQFIQEFMNQVQMSIGLDIQSMIPSSLQPVTQQL 581 Score = 92.8 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 96/282 (34%), Gaps = 37/282 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + FV + +LS+ + VYF S ++ + + G I + Sbjct: 10 ITFVRVALVNLIFLLSIAVIYFVYFHSDTAPPTVPQQSALVLNLSGPIVEQSRYINPMDS 69 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 +++E I DD+ T ++++ P + I +A+ + Sbjct: 70 VTGSLLGKDLPKENILFDIVETIRYAKDDDNVTGIVLALKELPETNLTKLRYIAKALNEF 129 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K I V + + Y ++ + + + V G Y K L+KL V+ Sbjct: 130 KASGKPIYAVGDFYNQSQYYLASYATKVYMSPDGGVLLKGYSAYSLYYKTLLEKLDVNTH 189 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-------- 203 + K+ PF +++ A + + + +V VS +R I Sbjct: 190 VFRVGTYKSAIEPFIRDDMSDAAKESASRWLGQLWSAYVDDVSNNRQIDAKTLNPSMDTF 249 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 L A+K+GL+D + +++V L + Sbjct: 250 LNELESVDGDIAKLAEKLGLVDELATRQQVRLELADVFGSDG 291 >gi|67925053|ref|ZP_00518433.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Crocosphaera watsonii WH 8501] gi|67853100|gb|EAM48479.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Crocosphaera watsonii WH 8501] Length = 596 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 110/236 (46%), Gaps = 9/236 (3%) Query: 32 EDNSPHVARIAIRGQIEDSQELIERI---------ERISRDDSATALIVSLSSPGGSAYA 82 ++ +A + + G I D E+I +I D A+++ ++SPGGSA Sbjct: 304 NSSNKKIAVVYLEGSIVDGVGTREQIGTSRFEKILRKIREDKQVKAVVLRINSPGGSATG 363 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + I R +Q ++ +KPVI + +AAS GY I+ I A ++ GSIGV ++ Sbjct: 364 SDIILREVQLIQEKKPVIISMGNVAASGGYWIATGGEHIFAQPNTITGSIGVFGLLFNIQ 423 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 + G++ VK+ + + + + Q V+ Y F+ V+ESR++ + Sbjct: 424 EVANNNGITWDVVKTGKFADLGTVRRPKTEQELAIYQKSVNRVYDLFLEKVAESRDLAKE 483 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 K ++ G++W+G AK +GL+D GG + Q + +IK + + Sbjct: 484 KVADIAQGKVWSGKTAKNIGLVDSFGGLDAAIQYAVEQAELGTDWEIKSYPSSPRF 539 Score = 93.5 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 104/265 (39%), Gaps = 25/265 (9%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------- 51 + + SLV L + S + V + + +I D + Sbjct: 19 FLFATLGVSSLVILLITLASVDTEPTIKDKSVLVLDLSTEIRDREPMVNISDILSDRQRS 78 Query: 52 -----ELIERIERISRDDSATALIVSLSSPGGSAYAG--EAIFRAIQKVKNRKPVITEVH 104 ++++ IE+ S+D A+ + S+ + I A+ K K I Sbjct: 79 VLTLNQVVKNIEKASKDSRIEAIFLDGSNASAGSGYANFAEIREALIKFKESGKKIIAYD 138 Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 Y ++ ++ ++ L+ G+ + + DK G+ ++ V+ K+ Sbjct: 139 VTLTEQEYYLTSLADTLIVHPMGLMELNGIGTESLFWTGAFDKYGIGVQVVRVGDYKSAV 198 Query: 165 SPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKV 221 P++ E++ + Q +Q ++ S ++ +++ V ESR I + ++D + EA+ + Sbjct: 199 EPYTRTELSAENRQQLQVLLGSIWNNYLQEVGESRQINPNDLQKVADNQGVLVPEEAQNL 258 Query: 222 GLIDVVGGQEEVWQSLYALGVDQSI 246 LID + +++ L + +Q Sbjct: 259 KLIDQIDYRDKAISILQEITGNQEK 283 >gi|167570707|ref|ZP_02363581.1| peptidase, U7 family protein [Burkholderia oklahomensis C6786] Length = 332 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 116/268 (43%), Gaps = 14/268 (5%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIERISRDDSATALIVSLSSPGGS 79 S + H A + I G+I +++++ ++ D +++ ++SPGGS Sbjct: 68 VSGDGGKLASGRHTAVVTIDGEIAASTNANAEDINSALDSAFEDSGTAGVVLRINSPGGS 127 Query: 80 AYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 ++ I++++ + KP+ V +M AS GY I+ A++ I + S+VGSIGVL Sbjct: 128 PVQAGIVYDEIRRLRKKYPAKPLYVVVTDMCASGGYYIASAADKIYVDKASVVGSIGVLM 187 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + KLGV + S K PFS PK Q+++D + F++ V + Sbjct: 188 DGFGFTGLMGKLGVERRLHTSGENKGFFDPFSPETPKMDAHAQEMLDEIHEQFIKAVKDG 247 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R + + G WTGA++ ++GL D G + V + + + D+ + Sbjct: 248 RGARLHDSPDIFSGLFWTGAKSIELGLADDFGTTDTVARDVLK------APDLVDYTVKE 301 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + + + + +++ Sbjct: 302 SLTNRVARRFGAAVGSAALKAAVAGSEL 329 >gi|167563547|ref|ZP_02356463.1| peptidase, U7 family protein [Burkholderia oklahomensis EO147] Length = 332 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 116/268 (43%), Gaps = 14/268 (5%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIERISRDDSATALIVSLSSPGGS 79 S + H A + I G+I +++++ ++ D +++ ++SPGGS Sbjct: 68 VSGDGGKLASGRHTAVVTIDGEIAASTNANAEDINSALDSAFEDSGTAGVVLRINSPGGS 127 Query: 80 AYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 ++ I++++ + KP+ V +M AS GY I+ A++ I + S+VGSIGVL Sbjct: 128 PVQAGIVYDEIRRLRKKYPAKPLYVVVTDMCASGGYYIASAADKIYVDKASVVGSIGVLM 187 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + KLGV + S K PFS PK Q+++D + F++ V + Sbjct: 188 DGFGFTGLMGKLGVERRLHTSGENKGFFDPFSPETPKMDAHAQEMLDEIHEQFIKAVKDG 247 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R + + G WTGA++ ++GL D G + V + + + D+ + Sbjct: 248 RGARLHDSPDIFSGLFWTGAKSIELGLADDFGTTDTVARDVLK------APDLVDYTVKE 301 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + + + + +++ Sbjct: 302 SLTNRVARRFGAAVGSAALKAAVAGSEL 329 >gi|172037525|ref|YP_001804026.1| protease IV, 67K long form [Cyanothece sp. ATCC 51142] gi|171698979|gb|ACB51960.1| protease IV, 67K long form [Cyanothece sp. ATCC 51142] Length = 597 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 60/264 (22%), Positives = 118/264 (44%), Gaps = 12/264 (4%) Query: 30 HVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPGGSA 80 ++ +A + + G I D + + +I ++ A+++ ++SPGGSA Sbjct: 303 TESSSNNKIAVVYLEGAIVDGVGNREQVGATRFARILRKIRDNEQVKAVVIRINSPGGSA 362 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 A + I R IQ ++ KPVI + +AAS GY I+ I A ++ GSIGV Sbjct: 363 TASDIILREIQLIQETKPVIISMGNVAASGGYWIATGGEHIFAQPNTITGSIGVFGVLFN 422 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 ++ + G++ VK+ + + + + Q V+ Y F+ V++SR++ Sbjct: 423 IQEIANNNGITWDVVKTGKFADLGTATRPKTEQELAIYQKSVNRVYDLFLEKVAKSRDLS 482 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY-- 258 +K + ++ GR+W+G AKK+GL+D GG +++++ + + Sbjct: 483 KEKVVNIAQGRVWSGETAKKIGLVDSFGGLGAAIDYAVEKTELGKDWQVEEYPTSQGFAE 542 Query: 259 -WFCDLKNLSISSLLEDTIPLMKQ 281 + + I PL ++ Sbjct: 543 LFIKKTLDEDIKITTNTVDPLTEE 566 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 110/257 (42%), Gaps = 27/257 (10%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------------ELIE 55 S+V L + S S V + +I+D + ++I+ Sbjct: 29 SVVILLITLASVDSEPTIKDQSVLVFDLSTEIKDREPLVNIGDILSGKESSVLTLSQVIK 88 Query: 56 RIERISRDDSATALIVSLSSP---GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 IE+ S+DD A+ + S+ G A I +A+ + K I + Y Sbjct: 89 NIEKASKDDRIKAIFLDGSNASSGSGYANFS-EIRQALIEFKESGKKIIAYDVTISEQEY 147 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEV 170 ++ ++ ++ L+ G+ + ++ L+K G+ ++ V+ K+ P+ +++ Sbjct: 148 YLTSLADTLIVNPMGLMEFNGIGTEPLFLTGALNKYGIGVQVVRVGEYKSGVEPYTRTQL 207 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGG 229 +P+ Q ++ ++ + ++ F++ V ++R I + ++D + EAK++ L+D V Sbjct: 208 SPENRQQLEVLLGNIWNNFLQDVGKTRQIKVNNLQSIADTQGLLYPQEAKELNLVDQVDY 267 Query: 230 QEEVWQSLYALGVDQSI 246 +++ L + ++ Sbjct: 268 RDKAISILKEITDNKEE 284 >gi|53714736|ref|YP_100728.1| protease IV [Bacteroides fragilis YCH46] gi|52217601|dbj|BAD50194.1| protease IV [Bacteroides fragilis YCH46] Length = 592 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 80/280 (28%), Positives = 140/280 (50%), Gaps = 19/280 (6%) Query: 2 EFVLKKIKTRYVM-----LSLVTLTVVYFSWSSHVEDNSPHV-ARIAIRGQIED------ 49 V +KT + L ++ L + + +D S ++ A G+I D Sbjct: 267 NDVRDYLKTLVKIDEDDRLPILGLEEMVNIKKNVPKDKSGNILAVYYASGEITDYAGSAA 326 Query: 50 ------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 ++I + ++ DD A+++ ++SPGGSA+A E I+ A++++K +KPVI + Sbjct: 327 SDEGIIGSKMIRDLRKLKEDDDVKAVVLRVNSPGGSAFASEQIWHAVKELKAKKPVIVSM 386 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 + AAS GY ISCA++ I+A T+L GSIG+ P VK +K+G++ VK++ Sbjct: 387 GDYAASGGYYISCAADSIIAEPTTLTGSIGIFGMIPNVKGLTEKIGLTYDVVKTNQFSDF 446 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 + VN ++Q ++ Y FV +E R++ DK +++GR+WTG AKK+GL Sbjct: 447 GNLMRPVNSDERALLQMMIGQGYDLFVSRCAEGRHMSKDKIEKIAEGRVWTGEMAKKIGL 506 Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 +D +GG + + + I + K+ L Sbjct: 507 VDELGGIGKALEIAAQKADLKG-YSIISYPAKKDILSTLL 545 Score = 94.3 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 99/264 (37%), Gaps = 26/264 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49 ++ +VTL + S + V + ++G + Sbjct: 22 LFIIGVVTLVGIISSSDTETVVKKNSVMMLDLKGTLVERTQESLEGLLGKFTGETADTYG 81 Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 +++ I++ +D+ + + S S + +AI +A+ K + + Sbjct: 82 LDDILASIKKAKVNDNIKGIYIQASWLDASYASLQAIRKALDDFKESGKFVVAYSDNYTQ 141 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y +S ++ ++ ++ G+ + K L KLG+ ++ K K+ PF Sbjct: 142 GLYYLSSVADKVMLNPKGMIEWRGLASAPIFYKDLLQKLGIEMQVFKVGTYKSAVEPFTA 201 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225 +E++P + + + S ++ + VS SR I D + +D + E+ K GL D Sbjct: 202 TEMSPANREQVTAFIGSIWNQILDGVSASRKIGKDSLNMYADRMLMFYPSDESVKCGLAD 261 Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249 + Q +V L L ++ Sbjct: 262 TLIYQNDVRDYLKTLVKIDEDDRL 285 >gi|332762480|gb|EGJ92745.1| signal peptide peptidase SppA, 67K type [Shigella flexneri 4343-70] Length = 594 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 295 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 354 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + K V+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 355 VTASEVIRAELAAARAAGKSVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 414 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 415 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 473 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 474 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 532 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 533 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 561 Score = 97.4 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 49/280 (17%), Positives = 98/280 (35%), Gaps = 39/280 (13%) Query: 8 IKTRYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQE-------------- 52 + ++ L LV + + S E S + I G I D + Sbjct: 3 LNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFSKLSRQLLG 62 Query: 53 -------------LIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKP 98 ++ I + D + T +++ L + G + I +A+++ ++ Sbjct: 63 ASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGK 122 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 + V E + Y ++ +N I + +V G Y K LDKL VS + Sbjct: 123 PVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVG 182 Query: 159 PMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLS 208 K+ PF +++P A + + + ++ V+ +R IP + L+ Sbjct: 183 TYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGAQGLLEGLT 242 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 T A + L+D + E+ ++L K Sbjct: 243 KTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 282 >gi|145642068|ref|ZP_01797639.1| protease IV [Haemophilus influenzae R3021] gi|145273248|gb|EDK13123.1| protease IV [Haemophilus influenzae 22.4-21] Length = 308 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 70/256 (27%), Positives = 127/256 (49%), Gaps = 14/256 (5%) Query: 36 PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 +A + + G I D + + + + D+S A+I+ ++SPGGSA+A E I Sbjct: 15 NKIAVVNVEGTIIDGESDEENAGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEII 74 Query: 87 FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + + ++ KPVI + MAAS GY IS ++ I+A ++ GSIG+ +P + + Sbjct: 75 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFTMFPTFENSI 134 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV+ V ++ + S FS + + Q ++ Y F+ +VS+ R + + Sbjct: 135 KKIGVNADGVSTTELANT-SAFSPLAKPVQDIYQTEIEYGYDRFLEIVSKGRQLSKTQVD 193 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L+ G++W G++A + GL+D +G E L + ++D++ WF D Sbjct: 194 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 250 Query: 266 LSISSLLEDTIPLMKQ 281 IS+LL DT ++ Sbjct: 251 GLISTLLRDTKKGAQE 266 >gi|60682742|ref|YP_212886.1| putative protease IV [Bacteroides fragilis NCTC 9343] gi|60494176|emb|CAH08968.1| putative protease IV [Bacteroides fragilis NCTC 9343] Length = 592 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 80/280 (28%), Positives = 140/280 (50%), Gaps = 19/280 (6%) Query: 2 EFVLKKIKTRYVM-----LSLVTLTVVYFSWSSHVEDNSPHV-ARIAIRGQIED------ 49 V +KT + L ++ L + + +D S ++ A G+I D Sbjct: 267 NDVRDYLKTLVKIDEDDRLPILGLEEMVNIKKNVPKDKSGNILAVYYASGEITDYAGSAA 326 Query: 50 ------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 ++I + ++ DD A+++ ++SPGGSA+A E I+ A++++K +KPVI + Sbjct: 327 SDEGIIGSKMIRDLRKLKEDDDVKAVVLRVNSPGGSAFASEQIWHAVKELKAKKPVIVSM 386 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 + AAS GY ISCA++ I+A T+L GSIG+ P VK +K+G++ VK++ Sbjct: 387 GDYAASGGYYISCAADSIIAEPTTLTGSIGIFGMIPNVKGLTEKIGLTYDVVKTNQFSDF 446 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 + VN ++Q ++ Y FV +E R++ DK +++GR+WTG AKK+GL Sbjct: 447 GNLMRPVNSDERALLQMMIGQGYDLFVSRCAEGRHMSKDKIEKIAEGRVWTGEMAKKIGL 506 Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 +D +GG + + + I + K+ L Sbjct: 507 VDELGGIGKALEIAAQKADLKG-YTIISYPAKKDILSTLL 545 Score = 97.8 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 99/264 (37%), Gaps = 26/264 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49 ++ +VTL + S + V + ++G + Sbjct: 22 LFIIGVVTLVGIISSSDTETVVKKNSVMMLDLKGTLVERTQESLEGLLGKFTGETADTYG 81 Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 +++ I++ DD+ + + S S + +AI +A+ K + + Sbjct: 82 LDDILASIKKAKEDDNIKGIYIQASWLDASYASLQAIRKALDDFKESGKFVVAYSDNYTQ 141 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y +S ++ ++ ++ G+ + K L KLG+ ++ K K+ PF Sbjct: 142 GLYYLSSVADKVMLNPKGMIEWRGLASAPIFYKDLLQKLGIEMQVFKVGTYKSAVEPFTA 201 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225 +E++P + + + S ++ + VS SR I D + +D + E+ K GL D Sbjct: 202 TEMSPANREQVTAFIGSIWNQILDGVSASRKIGKDSLNMYADRMLMFYPSDESVKCGLAD 261 Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249 + Q +V L L ++ Sbjct: 262 TLIYQNDVRDYLKTLVKIDEDDRL 285 >gi|72160983|ref|YP_288640.1| signal peptide peptidase A [Thermobifida fusca YX] gi|71914715|gb|AAZ54617.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49 [Thermobifida fusca YX] Length = 569 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 57/246 (23%), Positives = 99/246 (40%), Gaps = 5/246 (2%) Query: 45 GQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH 104 G + S + +D + A++ ++SPGGS A + I+R + + Sbjct: 305 GAVMGSDTVAAAFRAARKDPNVRAVVFRVNSPGGSYTASDVIWREVVLTSQAGTPVVVSM 364 Query: 105 EMAASAGYLISCASNIIVAAET-SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 A +G A ++ A+ ++ GSIGV+ + L KLGV+ + S Sbjct: 365 GDVAGSGGYFIAAGADVIIAQPGTITGSIGVVVGKAVLSTMLAKLGVTSDWIDSGNHAGM 424 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 SP + + + ++D Y FV V+E R + D+ ++ GRIWTG +A + GL Sbjct: 425 FSPNRPFSESEWERVNTMLDHIYDDFVGKVAEGRKMTRDQVHEVAKGRIWTGQDACERGL 484 Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 +D VGG E + G ++ + P + S + T + Sbjct: 485 VDEVGGLETAIRIARDRGGLPPSAPVRHF-PQLGPLERLIP---AESSEDRTAQAQLRLS 540 Query: 284 VQGLWA 289 G A Sbjct: 541 GWGPLA 546 Score = 82.7 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 17/245 (6%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-----PVITEVHEM 106 +++E I R + D ALIV + S + + +A+ + + Sbjct: 53 DIVEGIRRGAHDPRVKALIVKIGSQSLGMALVQELRQAVAMFRRAGKHTVAWSESFGEFG 112 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 S Y ++ A + I + VG G+ + + L+KLGV + K + Sbjct: 113 PGSLPYYLATAFDEIALLPSGSVGLTGLRVENLFFAEALEKLGVDYQGGARHEYKTALNM 172 Query: 167 FSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLI 224 F+E + +V+S V +S R++ ++ L D + EA + GL+ Sbjct: 173 FTERGFTDAHREASGRIVESLTEQLVAGISSGRDLSEERVRELIDQGPFLATEAVEAGLV 232 Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 D V ++E++ L + + L D +P+ +++ Sbjct: 233 DKVAYRDEIYSDLLDRYSADGTPAHLQYVSRYQR----------TRSLADRVPVAQRSGY 282 Query: 285 QGLWA 289 L + Sbjct: 283 VALIS 287 >gi|148240231|ref|YP_001225618.1| periplasmic serine proteases (ClpP class) [Synechococcus sp. WH 7803] gi|147848770|emb|CAK24321.1| Periplasmic serine proteases (ClpP class) [Synechococcus sp. WH 7803] Length = 270 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 5/252 (1%) Query: 41 IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK- 97 IAI G I S + +++ + + + AL++ + SPGG+ + I A+ +++ + Sbjct: 16 IAIEGAISGSTRRRVLKALREVQERE-FPALLLRIDSPGGTVGDSQEIHAALLRLRAKGC 74 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 V+ ++AS G + A+ IVA ++ GSIGV+ + + L+K+G+ ++VKS Sbjct: 75 RVVASFGNISASGGVYVGVAAETIVANPGTITGSIGVILRGNNLSELLNKIGIRFETVKS 134 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 K SP ++ Q++QD++DSSY FV V+E R + D +DGR+++GA+ Sbjct: 135 GAYKDILSPDRALSADERQLLQDLIDSSYDQFVAAVAEGRGLEPDAVKAFADGRVFSGAQ 194 Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQSIR-KIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 AK++GL+D +G +E+ L R K P+ L ++ S ++ + Sbjct: 195 AKELGLVDELGDEEQARVLAARLADLDEERCKPVTLGKPRKSLLQGLPGSALLSAVQQRL 254 Query: 277 PLMKQTKVQGLW 288 + Q LW Sbjct: 255 SAELELSGQLLW 266 >gi|256810518|ref|YP_003127887.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus fervens AG86] gi|256793718|gb|ACV24387.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus fervens AG86] Length = 311 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 73/285 (25%), Positives = 145/285 (50%), Gaps = 19/285 (6%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIE---------------DSQELIERIERISRD 63 + ++ S + +A++ + +I D++ I ++ + +D Sbjct: 23 IVLIMSLSGENINLFGGERIAKVYLCNEIYFDYNQDSGLFMQQKKDARYYINLLDDLEKD 82 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 DS +++ ++SPGG A E + R ++++ N+KPV+ V + AS Y++S ++ IVA Sbjct: 83 DSVKGVLLVVNSPGGEVIASEKLARKVEELANKKPVVVYVEGLDASGAYMVSAPADYIVA 142 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 + S+VGSIGV + + KLGV++ ++K+ K SPF + + + +Q +++ Sbjct: 143 EKHSIVGSIGVRMDVMHYYGLMKKLGVNVTTIKAGKYKDIGSPFRPMTEEEREYLQKMIN 202 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 +Y FV V+E R + + TL ++DG+I++G +AKKVGL+D VG +E + L L Sbjct: 203 ETYMDFVEWVAEHRGLSINYTLKIADGKIYSGEDAKKVGLVDEVGTEETALKKLEELANI 262 Query: 244 QSIRKIKDWNPPKNYWFCDL---KNLSISSLLEDTIPLMKQTKVQ 285 + +I ++ +N L I + + + M++ + Sbjct: 263 SN-PEIVEYGLEENRGLFGLTYYLGYGIGKGIGEVLYGMEKVNER 306 >gi|260776353|ref|ZP_05885248.1| protease IV [Vibrio coralliilyticus ATCC BAA-450] gi|260607576|gb|EEX33841.1| protease IV [Vibrio coralliilyticus ATCC BAA-450] Length = 616 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 76/272 (27%), Positives = 125/272 (45%), Gaps = 13/272 (4%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSP 76 + + + +A + G I D + + + DD A+++ + SP Sbjct: 315 TMKPKFDLSQDDIAIVVASGAIMDGSQPRGATGGDTVAALLRQARNDDKIKAVVLRVDSP 374 Query: 77 GGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 GGSA+A E I I+ +K KPV+ + +AAS GY IS ++ IVA T+L GSIG+ Sbjct: 375 GGSAFASEVIRNEIEALKETGKPVVASMSSLAASGGYWISMGADRIVAQPTTLTGSIGIF 434 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 + L+KLGV V +SP + + ++ A Q ++ YH F+ LVSE Sbjct: 435 SVITTFEKGLNKLGVYTDGVGTSPF-SGVGITTGLSDGAADAFQMGIEHGYHRFIGLVSE 493 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI--RKIKDWN 253 SR IP ++ GR+WTG +A K+GL+D +G ++ + L + +++ Sbjct: 494 SREIPLKDMDSIAQGRVWTGQDAAKLGLVDKMGDFDDAVKLAAELAKVEDYNLYWVEEPL 553 Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 P + D N +L D L+ Sbjct: 554 SPAEQFIQDFMNQVKVNLGVDASALLPAALQP 585 Score = 93.9 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 51/336 (15%), Positives = 109/336 (32%), Gaps = 46/336 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVED-NSPHVARIAIRGQIEDSQ-------- 51 + F+ + + ++ + +Y S S V + I G I + Sbjct: 19 ITFIRLALVNLIFLATIGIIYFIYTSAESPVPSVPQESALVLNISGPIVEQSRYVNPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93 +++E I D T ++++L P + I +A+ + Sbjct: 79 FTGSLFGQDMPRENVLFDIVESIRHAKDDPKITGIVLALRDMPETNLTKLRYIAKALNEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K I E + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 139 KASGKPIYAAGEFYNQSQYYLASYADKIYLAPDGAVLIKGYSAYSMYYKTLLEKLDVNTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV----- 206 + K+ PF +++ A + + + +V V+ +R + Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAAKESASRWLGQLWGAYVDDVATNRQVSAKTLNPTMEEF 258 Query: 207 ---LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDW-------NP 254 L + A + ++GL+D + +++V L + + D+ P Sbjct: 259 LGLLKEQDGDLAALSLELGLVDELATRQQVRSDLTEVFGSNGEDSYNYVDYYEYQTTMKP 318 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + D+ + S + D T + A+ Sbjct: 319 KFDLSQDDIAIVVASGAIMDGSQPRGATGGDTVAAL 354 >gi|192362443|ref|YP_001982749.1| signal peptide peptidase SppA, 67K type [Cellvibrio japonicus Ueda107] gi|190688608|gb|ACE86286.1| signal peptide peptidase SppA, 67K type [Cellvibrio japonicus Ueda107] Length = 635 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 70/283 (24%), Positives = 140/283 (49%), Gaps = 15/283 (5%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATA 68 V++ S V V I G I+D S+ +++ + + +D+ A Sbjct: 323 VSVKRYLADVRSQVSPEPNLVGLITAVGGIQDGSQRPGSIGSESMLKLLRQAKENDNLKA 382 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETS 127 L++ + S GGSA+A E I I ++++ + + +AAS GY I+ AS+ I A T+ Sbjct: 383 LVIRVDSGGGSAFASEIIRTEINALRDKGIPVFISMGSVAASGGYWIATASDEIWAQPTT 442 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 + GSIGV +P ++ L +G++ + ++ + S ++PK ++Q VD+ Y Sbjct: 443 ITGSIGVFGAFPTLEKTLGNMGITSDGIATTELAGSMSISRPLSPKMGDIVQQSVDNIYQ 502 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F+ LV+E+R ++ ++ G +WTGA AK++GL+D +G E+ ++ Sbjct: 503 RFIHLVAETRQQTPEQIDAVAQGHVWTGARAKELGLVDNLGTLEDTIAAVAERAGL-ETY 561 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 +++ PP + L++L+ +S + + ++ L ++ Sbjct: 562 RVELVEPPLSPREELLRSLAENS----AWGFIPHSLLESLASL 600 Score = 82.7 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 95/244 (38%), Gaps = 11/244 (4%) Query: 51 QELIERIERISRDDSATALIVSLSS-PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 ++LIE I++ + D + +++ GG I +A++ K I + Sbjct: 110 RDLIEAIQQAATDKRVSMIVIEPGKLLGGGISKINEIGQALEAFKASGKKIIAASHYYSQ 169 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y ++ ++ I + V G Y K LDKLG++I + +S K PF Sbjct: 170 DQYYLASFADDIYLHDMGSVEVTGYGRYMAYYKTALDKLGITIHAFRSGKYKDFLEPFLR 229 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--------RIWTGAEAK 219 ++ ++ + +++ +H + + V ++RN+ + R + A Sbjct: 230 DNMSDESREHNSAWLNALWHSYTQQVEKARNLEPGSLNDFINNMDTYLKQTRGDSAKLAL 289 Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 + GL+D + ++++ Q L ++ + + K Y +S L I + Sbjct: 290 EKGLVDKLLSRQDMEQLLADTVGKKNSKGLYKNVSVKRYLADVRSQVSPEPNLVGLITAV 349 Query: 280 KQTK 283 + Sbjct: 350 GGIQ 353 >gi|116749395|ref|YP_846082.1| signal peptide peptidase SppA, 36K type [Syntrophobacter fumaroxidans MPOB] gi|116698459|gb|ABK17647.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49 [Syntrophobacter fumaroxidans MPOB] Length = 329 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 65/283 (22%), Positives = 121/283 (42%), Gaps = 23/283 (8%) Query: 33 DNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSPGGS 79 + V I ++G I D+ QE++ ++++ +D + A+++ + S GGS Sbjct: 43 EGKDKVLLIPVKGFISDTSRGFVLRQKPAMVQEIVSQLKKAEKDKTVKAVLLKVDSSGGS 102 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN--IIVAAETSLVGSIGVLFQ 137 A + ++ I + K R M +A A IVA +++ GS+GV+F Sbjct: 103 VSASDILYHEIMEFKRRSGAKLVAVLMGTAASGGYYIALPADSIVAHPSTITGSVGVIFI 162 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P V +DK+G+ ++ KS K SPF + + Q++Q ++D F+ L R Sbjct: 163 RPKVTGLMDKIGLEVEVDKSGRNKDMGSPFRKTTAEEQQILQHLIDELARKFIDLTVAHR 222 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 + +S R++ EA ++GL+D VG ++ + L ++ + Sbjct: 223 RLEPAALADVSTARVYLAEEALRLGLVDKVGYVDDALREAQTLAGLPPNARVVVYR-RAE 281 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQ-------GLWAVWNP 293 Y +L N+S S I L+ G + +W P Sbjct: 282 YPDDNLYNVSTSKSDGGRISLIDLGPADSFSSLHSGFYYLWLP 324 >gi|303244900|ref|ZP_07331226.1| signal peptide peptidase SppA, 36K type [Methanothermococcus okinawensis IH1] gi|302484717|gb|EFL47655.1| signal peptide peptidase SppA, 36K type [Methanothermococcus okinawensis IH1] Length = 310 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 65/275 (23%), Positives = 139/275 (50%), Gaps = 18/275 (6%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHV--EDNSPHVARIAIRGQIE---------------DS 50 I +++ ++ + ++ S ++ + ++A I I ++ D Sbjct: 10 ILFILMIMVVIAIGLLLVPSSDNILNFKSEGNIAVINIDNELVLKNSGSSGLFGNNNPDV 69 Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + I + + + A+++ ++ PGG A E + R +++V +KPV+ + + AS Sbjct: 70 NDYIGALNDAENNPNIKAILLKVNCPGGEVIASEKLARKVKEVSKKKPVVAYIETLGASG 129 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 Y+ +N IVA + S+VGSIGV + + KLG++ +K+ K SP+ + Sbjct: 130 AYMTIAPANYIVAEKHSIVGSIGVRMDVIHYYGLMKKLGINATVIKAGKYKDIGSPYRPM 189 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 P+ ++ +++ +Y FV+ V+E+R++ ++TL ++GRI++G++AKKVGL+D VG + Sbjct: 190 TPEEKACLEKMINETYMDFVKWVAENRHMTINETLKAANGRIYSGSDAKKVGLVDAVGTE 249 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 E+ + + K +++ P K + + Sbjct: 250 EDAINITAKIANISN-PKTEEYTPSKPAGIFSMMS 283 >gi|308183529|ref|YP_003927656.1| Signal peptide protease IV (Protease IV) (Endopeptidase IV) [Helicobacter pylori PeCan4] gi|308065714|gb|ADO07606.1| Signal peptide protease IV (Protease IV) (Endopeptidase IV) [Helicobacter pylori PeCan4] Length = 292 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 60/277 (21%), Positives = 133/277 (48%), Gaps = 7/277 (2%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ ++L + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKSFVLLL----IVLVFFSAKESAPSEPPNLAKLYLNGAIFSTEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P + +Q+ Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQN 192 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V+ Y FV V+++R + ++G++++ A K+ LID + ++ L L Sbjct: 193 LVNEQYQMFVDDVAKARKLNAKDYKDFAEGKVFSAQNALKLKLIDKISTIKQAQDRLMEL 252 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 + ++ + F + S S+++ Sbjct: 253 SKVKKAYWLEKSPMER---FIEKATQSASNIITQAFG 286 >gi|150399145|ref|YP_001322912.1| signal peptide peptidase SppA, 36K type [Methanococcus vannielii SB] gi|150011848|gb|ABR54300.1| signal peptide peptidase SppA, 36K type [Methanococcus vannielii SB] Length = 311 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 74/287 (25%), Positives = 144/287 (50%), Gaps = 17/287 (5%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI------------- 47 M+ V +V++ L+ + ++ S ++A I + G I Sbjct: 1 MKKVYTYSAAAFVIMGLLLIGILAVVSFDTSF--SNNIAMINLDGAIFLKGSDSGLLSTG 58 Query: 48 -EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 ++ I+ ++ + +D+ A+I+ ++SPGG A E + R I++V +KPV+ + + Sbjct: 59 TTGVEDYIKWLDEVENNDNIKAVIIKINSPGGEVVASEKLSRKIKEVSEKKPVVAYIETI 118 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 AS Y+ + +SN IVA + SLVGSIGV + + ++KLGV+ S+ K +P Sbjct: 119 GASGAYMAASSSNYIVAEKQSLVGSIGVRMELLHYYGLMEKLGVNTTSITGGKYKNIGTP 178 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 + + +M++ +VD Y F+ +V+E+RN+ ++TL+ +DG+I+ G +AK GLID Sbjct: 179 NRPMTEEEYKMLESIVDEMYFDFISMVAENRNMTINETLIAADGKIYNGLQAKNAGLIDQ 238 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273 VG +++ +I ++ + F + +I++ Sbjct: 239 VGTEKDAIDMACKFAKISE-PRIYEYKKSSSIGFFGMTLNNIATSFG 284 >gi|255011818|ref|ZP_05283944.1| putative protease IV [Bacteroides fragilis 3_1_12] gi|313149656|ref|ZP_07811849.1| protease IV [Bacteroides fragilis 3_1_12] gi|313138423|gb|EFR55783.1| protease IV [Bacteroides fragilis 3_1_12] Length = 592 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 80/280 (28%), Positives = 140/280 (50%), Gaps = 19/280 (6%) Query: 2 EFVLKKIKTRYVM-----LSLVTLTVVYFSWSSHVEDNSPHV-ARIAIRGQIED------ 49 V +KT + L ++ L + + +D S ++ A G+I D Sbjct: 267 NDVRDYLKTLVKIDEDDRLPILGLEEMVNIKKNVPKDKSGNILAVYYASGEITDYAGSAA 326 Query: 50 ------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 ++I + ++ DD A+++ ++SPGGSA+A E I+ A++++K +KPVI + Sbjct: 327 SDEGIIGSKMIRDLRKLKEDDDVKAVVLRVNSPGGSAFASEQIWHAVKELKAKKPVIVSM 386 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 + AAS GY ISCA++ I+A T+L GSIG+ P VK +K+G++ VK++ Sbjct: 387 GDYAASGGYYISCAADSIIAEPTTLTGSIGIFGMIPNVKGLTEKIGLTYDVVKTNQFSDF 446 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 + VN ++Q ++ Y FV +E R++ DK +++GR+WTG AKK+GL Sbjct: 447 GNLMRPVNSDERALLQMMIGQGYDLFVSRCAEGRHMSKDKIEKIAEGRVWTGEMAKKIGL 506 Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 +D +GG + + + I + K+ L Sbjct: 507 VDELGGIGKALEIAAQKADLKG-YTIISYPAKKDILSTLL 545 Score = 95.4 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 98/264 (37%), Gaps = 26/264 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49 ++ +VTL + S V + ++G + Sbjct: 22 LFIIGVVTLVGIISSSDIETVVKKNSVMMLDLKGTLVERTQESLEGLLGKFTGETADTYG 81 Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 +++ I++ +D+ + + S S + +AI +A+ K + + Sbjct: 82 LDDILASIKKAKENDNIKGIYIQASWLDASYASLQAIRKALDDFKESGKFVVAYSDNYTQ 141 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y +S ++ ++ ++ G+ + K L KLG+ ++ K K+ PF Sbjct: 142 GLYYLSSVADKVMLNPKGMIEWRGLASAPIFYKDLLQKLGIEMQVFKVGTYKSAVEPFTA 201 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225 +E++P + + + S ++ + VS SR I D + +D + E+ K GL D Sbjct: 202 TEMSPANREQVTAFIGSIWNQILDGVSASRKIGKDSLNMYADRMLMFYPSDESVKCGLAD 261 Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249 + Q +V L L ++ Sbjct: 262 TLIYQNDVRDYLKTLVKIDEDDRL 285 >gi|332667870|ref|YP_004450658.1| signal peptide peptidase SppA, 67K type [Haliscomenobacter hydrossis DSM 1100] gi|332336684|gb|AEE53785.1| signal peptide peptidase SppA, 67K type [Haliscomenobacter hydrossis DSM 1100] Length = 594 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 67/273 (24%), Positives = 127/273 (46%), Gaps = 11/273 (4%) Query: 27 WSSHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPG 77 +A + G + D + + IE I DD A+++ ++S G Sbjct: 297 PGKKNLSADNKIAVLYAEGTVLDGKGANGTIGDKRYVSAIEDILEDDKIKAIVLRVNSGG 356 Query: 78 GSAYAGEAIFRAI-QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GSA A E I+ A+ + + KP+I + + AAS GY I+C ++ I A ++ GSIGV Sbjct: 357 GSALASENIWYALSKAKEAGKPLIVSMGDYAASGGYYIACMADSIYAEPNTITGSIGVFR 416 Query: 137 QYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 P ++ + +KLG+++ SVK+ P + +++ + + Q + Y F++ V++ Sbjct: 417 MVPSIEKMMANKLGITMDSVKTGPFALGLNVMQDMSEEEARRAQISTEEMYRLFIKRVAD 476 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 R + + ++ GR+W+G +AK++GL+D +G +S LG + R + + Sbjct: 477 GRKMKPEAVNEIAQGRVWSGVDAKRIGLVDKLGDLNAAIKSAAKLGKIKDYRTVTYPSIK 536 Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + L S E + + Q + L Sbjct: 537 DPMQQLLEEFLGEGSDDEAKMGKIMQKEFPELV 569 Score = 93.9 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 97/263 (36%), Gaps = 24/263 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQ------------IEDSQ-------- 51 +++ + + + S V R+ I D + Sbjct: 23 LILVGIGIIGAIASSAEKTEPVGPNSVLRLTFDQVMPEQTNNVEASSISDFKRSKVLGVH 82 Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAI-FRAIQKVKNRKPVITEVHEMAASA 110 ++ + I R + DD+ +++ + +A I +AI K + + ++ Sbjct: 83 DVADAIRRAADDDNIKGILLEPEMASLNGFASARILRQAIADFKKKGKFVVAHGKIFMRG 142 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS-- 168 Y ++ ++ + + V G Q + K LD+LG+ ++ + K P+ Sbjct: 143 SYYLASVADEVYINPSGYVEINGFAVQQMFYKRMLDQLGIKMQIYYAGKFKGATEPYRLE 202 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 + +P+ ++ + Y F+ +++SR + + + + + T +A + GL D V Sbjct: 203 KFSPENKLQYKEFLADFYDVFLEDLAKSRKMSSAQLRSVINQGVANTPEKAVEYGLFDKV 262 Query: 228 GGQEEVWQSLYALGVDQSIRKIK 250 ++E+ L + +K Sbjct: 263 LYRQELIVQLRKKLGLDADEDVK 285 >gi|284102428|ref|ZP_06386046.1| signal peptide peptidase SppA (protease IV) [Candidatus Poribacteria sp. WGA-A3] gi|283830320|gb|EFC34553.1| signal peptide peptidase SppA (protease IV) [Candidatus Poribacteria sp. WGA-A3] Length = 322 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 62/288 (21%), Positives = 127/288 (44%), Gaps = 25/288 (8%) Query: 31 VEDNSPHVARIAIRGQIEDSQ----------------ELIERIERISRDDSATALIVSLS 74 + V + I G + ++ E + + + D++ A+++ +S Sbjct: 35 SGEGRDKVLLVEISGVLTSAKPGGVLDRFFHRPSLPARFKEELTKAADDEAVKAIVLRIS 94 Query: 75 SPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 +PGG+ A + ++ IQ++K + PVI + ++ S GY ++ A++ +VA +S+ GS+ Sbjct: 95 TPGGTVTASDILYHEIQEMKKTRKVPVIASIMDLGTSGGYYVAMAADRVVAHPSSVTGSL 154 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GV+ ++K+GV +V S P K SPF + + + Q V+DS Y F+R+ Sbjct: 155 GVIMLTLNASGLMEKIGVRADAVMSGPHKDMGSPFRTMTDQDRAIFQGVIDSLYARFLRV 214 Query: 193 VSESR-NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 + + R ++ + L+DGRI++ +AK GLID +G ++ + + + + Sbjct: 215 IEQGRPDLKPETIRQLADGRIYSATQAKDHGLIDGIGYLDDALELAKKEAGIEEAQVVMY 274 Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV------QGLWAVWNP 293 P + + P + + +W P Sbjct: 275 RRPGGYQPNIYAQGPGAPGRTDWIFPKLDPVSLLLAGGTPAFMYLWLP 322 >gi|315453141|ref|YP_004073411.1| protease IV [Helicobacter felis ATCC 49179] gi|315132193|emb|CBY82821.1| protease IV (PspA) [Helicobacter felis ATCC 49179] Length = 285 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 68/281 (24%), Positives = 133/281 (47%), Gaps = 7/281 (2%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K KT ++L FS + P++A+I + G I +S+ ++++R+ Sbjct: 12 LDFITKYFKT----FVFLSLLFFAFSLNKDEGHAQPNLAKIYLHGPIFESESFRDQVDRV 67 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGGS A + + ++ PV+ V + AS Y +N+ Sbjct: 68 LKIPSIKGVLLLIDSPGGSISASVELSDIVATLRKTMPVVAYVQGVMASGSYYTGMQANL 127 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 I A +LVGSIGV+F + +DKLG+ + + K + K Q + D Sbjct: 128 IYANRGALVGSIGVIFSGANIAALMDKLGIKSQGMAKGEYKEVGTFTRAWTDKEKQFLGD 187 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 ++ Y+ FV V+++R + K+ + ++G+I++ +A + LID VG ++ +L L Sbjct: 188 LLSEQYNMFVSDVAKARGLDPKKSNIFAEGKIFSATQAANLHLIDHVGTYDQAVYALQKL 247 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 ++ +K + F D S S +L + + Sbjct: 248 TQVKNPIWLK---KDRLEMFMDKFLQSSSQVLSQVLGYQLR 285 >gi|309788853|ref|ZP_07683448.1| signal peptide peptidase SppA, 67K type [Shigella dysenteriae 1617] gi|308923124|gb|EFP68636.1| signal peptide peptidase SppA, 67K type [Shigella dysenteriae 1617] Length = 594 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 295 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 354 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 355 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 414 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 415 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 473 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 474 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVTKAAELAKV-KQWHLEYYVDEPTF 532 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 533 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 561 Score = 98.9 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 49/280 (17%), Positives = 99/280 (35%), Gaps = 39/280 (13%) Query: 8 IKTRYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ--------------- 51 + ++ L LV + + S E S + I G I D+ Sbjct: 3 LNLFFIFLVLVGVGLWMQVSGGDSKETASRGALLLDISGVIVDNPDSSQRFSKLSRQLLG 62 Query: 52 ------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKP 98 +++ I + D + T +++ L + G + I +A+++ ++ Sbjct: 63 ASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGK 122 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 + V E + Y ++ +N I + +V G Y K LDKL VS + Sbjct: 123 PVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVG 182 Query: 159 PMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLS 208 K+ PF +++P A + + + ++ V+ +R IP + L+ Sbjct: 183 TYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNAVAANRQIPAQQVFPGAQGLLEGLT 242 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 T A + L+D + E+ ++L K Sbjct: 243 KTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 282 >gi|295096153|emb|CBK85243.1| signal peptide peptidase SppA, 67K type [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 618 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 75/273 (27%), Positives = 126/273 (46%), Gaps = 14/273 (5%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPG 77 + +D+ +A + G I D +E +I D A+++ ++SPG Sbjct: 317 AAKKPDDSGDSIAVVFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPG 376 Query: 78 GSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GS A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 377 GSVSASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFG 436 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 V+ LD LGV V +SP+ S + P+ +MMQ ++S Y F+ LV++S Sbjct: 437 MINTVENSLDYLGVHTDGVSTSPLADVSVTKS-LPPEVSEMMQLSIESGYKRFITLVADS 495 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R D+ ++ G +WTG +AK GL+D +G ++ + L + + Sbjct: 496 RKKTPDQIDQIAQGHVWTGQDAKSNGLVDSLGDFDDAVKKAAELAKL-KQWHVDYYQDEP 554 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 ++ + ++S S + +P Q + A Sbjct: 555 TFFDMVMDSMSGS--VRAMLPDALQAYLPAPVA 585 Score = 96.6 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 103/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVY--FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + + ++ ++ S ++ + ++ + I G I D Sbjct: 19 LNFVRNLVMNIFFIFLVLVCAGIWMHISNANQSQHSTRGALLLDITGVIVDKPSTSNRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 ++++ I + D + T +++ L G+ + I +A+ Sbjct: 79 VIGRQLFGATSDRLQENSLFDIVDTIRQAKDDRNITGIVLDLKDFAGADQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + + + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPVIAIGDSYTQGQYYLASFANKIWLSPQGTVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 + + K+ PF +++P A + + + ++ ++ +R I ++ Sbjct: 199 TTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLGTIAANRQITAEQVFPGA 258 Query: 205 LVLSDGRIW----TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + DG T A L+D +G E+ ++L K Sbjct: 259 RGVLDGLRMVDGDTAKYALDNKLVDQLGSSAEIEKALTKQFGWSKEDK 306 >gi|222151629|ref|YP_002560785.1| hypothetical protein MCCL_1382 [Macrococcus caseolyticus JCSC5402] gi|222120754|dbj|BAH18089.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 333 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 67/280 (23%), Positives = 133/280 (47%), Gaps = 17/280 (6%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALI 70 S + D + +ARI I G I D+ Q +++ ++ + + AL+ Sbjct: 44 LASSTVDGSDATNQIARIEIDGTIMDTGTPSPFSGESYNHQLILDSLDEVKDNGDIKALM 103 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLV 129 + ++SPGG Y I I+ VK + + A++G A + I A++ +L Sbjct: 104 LVVNSPGGGVYESAEIHDKIEAVKEAGKKVYVTMKNTAASGGYYISAPADKIYASKETLT 163 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GS+GV+ Q K DK GV ++KS P K SP E++ ++Q VD SY F Sbjct: 164 GSLGVIMQSMNYKELADKYGVKFNTIKSGPHKDIMSPTKEMDETERAILQKFVDESYEGF 223 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V ++S R++ + ++DGRI++G +A+K+ L+D +G + + ++L ++ ++ Sbjct: 224 VNVISNGRHMDKAQVKKIADGRIYSGQQAQKLDLVDEIGTEADAMKALKKEIKAKNA-EV 282 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 +++ P +++ + S + + ++ L + Sbjct: 283 IEFSEPDDFFNSKF--FAADSFVSHLMGKNDVAAIKELLS 320 >gi|294501535|ref|YP_003565235.1| signal peptide peptidase SppA, 36K type [Bacillus megaterium QM B1551] gi|294351472|gb|ADE71801.1| signal peptide peptidase SppA, 36K type [Bacillus megaterium QM B1551] Length = 336 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 78/331 (23%), Positives = 141/331 (42%), Gaps = 45/331 (13%) Query: 6 KKIKTRYV---MLSLVTLTVVYFSWSSHVEDN----------------------SPHVAR 40 K+ + + + + FS +D + +A Sbjct: 4 KRWIALLIAACLFIFSAIVNIGFSVKEEKDDGLAGIFGGDDSELSETVIEKGNAAKKIAV 63 Query: 41 IAIRGQIEDS---------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + + G I+D+ Q ++++E D + +I+ ++SPGG Sbjct: 64 LEVNGTIQDTGSGSSPLMSQNGYNHQAFLKQLEAAKNDKAVKGVIIKVNSPGGGVVESAE 123 Query: 86 IFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I + I+++K +KPV + MAAS GY IS A+N I A +L GS+GV+ Q Sbjct: 124 IHKKIEELKKETKKPVYISMGSMAASGGYYISTAANKIYAIPDTLTGSLGVIMQSVNYGK 183 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 DKLGV +KS K SP E+ + ++MQ +VD+SY FV ++SE R++ +K Sbjct: 184 LADKLGVESVVIKSGAHKDIMSPTREMTGEEKEIMQTLVDNSYDGFVNVISEGRHLSKEK 243 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD---WNPPKNYWF 260 ++DGR++ G +AK++ L+D +G E+ + + + I+ + P Sbjct: 244 VRSIADGRVYDGRQAKELKLVDQLGYFEDAVTGMEKDYKLKGAQVIQYNQGFGLPSWLSM 303 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 K + + + Q L ++ Sbjct: 304 SMQKVIGGDEQVTAMLKTFAQPSSPRLMYLY 334 >gi|160875523|ref|YP_001554839.1| signal peptide peptidase SppA [Shewanella baltica OS195] gi|160861045|gb|ABX49579.1| signal peptide peptidase SppA, 67K type [Shewanella baltica OS195] gi|315267710|gb|ADT94563.1| signal peptide peptidase SppA, 67K type [Shewanella baltica OS678] Length = 615 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 14/268 (5%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 V I G I + E + + D AL++ + SPGGSA+A Sbjct: 322 VEQDSVGIIVASGTILNGTQPAGQIGGESTAELLRKARFDKHVKALVLRVDSPGGSAFAS 381 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + + +K KPV+ + +AAS GY IS +++ I A T+L GSIG+ + Sbjct: 382 EQIRQELLALKAAGKPVVVSMGSLAASGGYWISASADYIFATPTTLTGSIGIFGMITTFE 441 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L +GV V +S + ++P+ ++Q ++ Y F+ LV++ R + + Sbjct: 442 DSLASIGVHTDGVSTSEWAGLSVTRT-LSPQVEAIIQRHIERGYLDFISLVAKERKMTIE 500 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFC 261 + ++ GR+W+G +A ++GL+D +G +E L ++ + F Sbjct: 501 QVDKIAQGRVWSGKKALELGLVDELGDLDEAIAKAAKLADMTLFDTRVIEQELTPEQRFM 560 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289 S+SS L ++ + + ++ + A Sbjct: 561 QQMFASVSSYLPASLS--QSSMLEQMLA 586 Score = 83.9 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 35/273 (12%), Positives = 89/273 (32%), Gaps = 36/273 (13%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51 +K+ + ++ ++ S ++ + + G I D + Sbjct: 23 RKLILNLIFFGILATIIISIGSSEDIQVEDNSALVLNLAGSIVDQKQQVDPLEAAFKQGQ 82 Query: 52 -----------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRKPV 99 +++ I+ ++D + L++ ++I A+ + K Sbjct: 83 NANADGEILLADVLYVIDNAAQDQRISTLVLDLADLKRAGISKLQSIGDALNRFKESGKK 142 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 + + Y ++ ++ I V G+ Y K LDKL V + Sbjct: 143 VVAIGNYYEQNQYFLASFADTIYLNPQGGVSLDGLSMYNQYFKSALDKLKVKAHIFRVGT 202 Query: 160 MKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSD 209 K+ P+ +++ A + ++ + + + V+ +RNI + L Sbjct: 203 FKSAVEPYMRDDMSDAAREASSALLADVWQSYTQTVAGNRNIEPNSLVPDATTYLAELDK 262 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + A A + +D + E+ Q++ Sbjct: 263 ANGDSAAMAINMKWVDSLATTEDFRQTMLETVG 295 >gi|172060050|ref|YP_001807702.1| peptidase S49 [Burkholderia ambifaria MC40-6] gi|171992567|gb|ACB63486.1| peptidase S49 [Burkholderia ambifaria MC40-6] Length = 330 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 67/286 (23%), Positives = 124/286 (43%), Gaps = 17/286 (5%) Query: 7 KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 KI R+ + L+ ++ FS + H A + I G+I +++++ ++ Sbjct: 44 KIFFRFAFLGVFLLLAFALIDFSDDAKFASTGRHTALVTIDGEIAAGTNANAEDINTALD 103 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115 DD A +++ ++SPGGS ++ I++++ + KP+ V +M AS GY I+ Sbjct: 104 AAFDDDGAAGVVLRINSPGGSPVQAGMVYDEIRRLRTKYPNKPLYVVVTDMCASGGYYIA 163 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL + KLGV + S K PFS PK Sbjct: 164 SAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVDRRLHTSGENKGFYDPFSPETPKMD 223 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q ++D + F++ V + R +T + G WTG ++ ++GL D G + V + Sbjct: 224 AHAQALLDQVHAQFIKAVKDGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDTVAR 283 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 + + D+ ++ + + L Sbjct: 284 DVLK------APDLVDYTVKESLTNRVARKFGAAVGGAAMKALAAG 323 >gi|300924815|ref|ZP_07140755.1| signal peptide peptidase SppA [Escherichia coli MS 182-1] gi|301327503|ref|ZP_07220736.1| signal peptide peptidase SppA [Escherichia coli MS 78-1] gi|309793539|ref|ZP_07687966.1| signal peptide peptidase SppA [Escherichia coli MS 145-7] gi|331653170|ref|ZP_08354175.1| signal peptide peptidase SppA, 67K type [Escherichia coli M718] gi|300419022|gb|EFK02333.1| signal peptide peptidase SppA [Escherichia coli MS 182-1] gi|300845934|gb|EFK73694.1| signal peptide peptidase SppA [Escherichia coli MS 78-1] gi|308123126|gb|EFO60388.1| signal peptide peptidase SppA [Escherichia coli MS 145-7] gi|323378358|gb|ADX50626.1| signal peptide peptidase SppA, 67K type [Escherichia coli KO11] gi|331049268|gb|EGI21340.1| signal peptide peptidase SppA, 67K type [Escherichia coli M718] Length = 666 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 367 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 426 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 427 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 486 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 487 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 545 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 546 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 604 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 605 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 633 Score = 100 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 67 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 126 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 127 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 186 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 187 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 246 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 247 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 306 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 307 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 354 >gi|306814983|ref|ZP_07449139.1| protease 4 [Escherichia coli NC101] gi|305851631|gb|EFM52084.1| protease 4 [Escherichia coli NC101] Length = 618 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+ +R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVANARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 99.3 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 306 >gi|224024636|ref|ZP_03643002.1| hypothetical protein BACCOPRO_01364 [Bacteroides coprophilus DSM 18228] gi|224017858|gb|EEF75870.1| hypothetical protein BACCOPRO_01364 [Bacteroides coprophilus DSM 18228] Length = 589 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 72/279 (25%), Positives = 138/279 (49%), Gaps = 15/279 (5%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQI------------EDSQELIERIERISRDDSATAL 69 ++ ++ + +S +A G+I +S+++I + ++ D + A+ Sbjct: 290 MINVKRNTPRDKSSNIIAVYYAYGEIDNSSSYNYNEEGINSEKVITDLRKLREDKNIKAV 349 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 ++ ++SPGGSAY E I+R ++ +K KPVI + + AAS GY ISCA++ IVA T+L Sbjct: 350 VLRVNSPGGSAYGSEQIWREVKLLKEEKPVIVSMGDYAASGGYYISCAADWIVAEPTTLT 409 Query: 130 GSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIG+ P + KL + I VK++ + + +N + ++Q V++ Y Sbjct: 410 GSIGIFGMVPDFSELVTQKLDLHIDGVKTNKLADLGNIARPLNAEEKALIQQSVNNGYEL 469 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 F R +E RN+P + +++GR+WTGA AK++ L+D +G + ++ Sbjct: 470 FTRRCAEGRNMPIEDLKKIAEGRVWTGAMAKELKLVDELGNLQTALKAASQHAKI-ENYN 528 Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + P++ + L S ++ + +G Sbjct: 529 VVAYPKPED-FLTTLMKTRKDSYIQSQVEATFGDFSKGF 566 Score = 103 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 38/267 (14%), Positives = 104/267 (38%), Gaps = 23/267 (8%) Query: 10 TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DS 50 ++++ + ++ + S + ++ V + ++G I Sbjct: 20 FIFMIIGIASVAGLLASSETETTVHNNSVFVLDLQGSIAERYQPTPIDQLLDEEQSVYGL 79 Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 ++ I + +D + +++ + + + + I +A+ K I + + Sbjct: 80 NDISASIAKAKENDQIKGIYLNVGNFSCGSASLQEIRQALADFKESGKFIIAYGGGYSQS 139 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FS 168 GY ++ ++ I+ + + G+ Q +VK L K+G++++ + K+ P + Sbjct: 140 GYYLASIADKIILNPSGSISWHGLSAQTLFVKDLLKKVGINVQIFRVGTYKSAVEPLIGT 199 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLIDV 226 E++P + Q V S ++ +++SR + ++ +L+D GL D Sbjct: 200 EMSPANKEQTQAFVQSIWNQMTDDIAQSRQLTQEQLNILADQYMDFQLADSCIANGLADT 259 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWN 253 + ++EV L + + K+ Sbjct: 260 LMYKDEVLAYLKSQIGLKEKDKLHTLT 286 >gi|293446138|ref|ZP_06662560.1| signal peptide peptidase SppA [Escherichia coli B088] gi|300823176|ref|ZP_07103309.1| signal peptide peptidase SppA [Escherichia coli MS 119-7] gi|331677647|ref|ZP_08378322.1| signal peptide peptidase SppA, 67K type [Escherichia coli H591] gi|291322968|gb|EFE62396.1| signal peptide peptidase SppA [Escherichia coli B088] gi|300524330|gb|EFK45399.1| signal peptide peptidase SppA [Escherichia coli MS 119-7] gi|324016441|gb|EGB85660.1| signal peptide peptidase SppA [Escherichia coli MS 117-3] gi|331074107|gb|EGI45427.1| signal peptide peptidase SppA, 67K type [Escherichia coli H591] Length = 666 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 367 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 426 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 427 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 486 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 487 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 545 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 546 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 604 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 605 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 633 Score = 98.5 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 67 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 126 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 127 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 186 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 187 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 246 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 S + K+ PF +++P A + + + ++ V+ +R IP + + Sbjct: 247 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRLIPAQQVFPGA 306 Query: 209 DGRIW--------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 G + T A + L+D + E+ ++L K Sbjct: 307 QGLLVGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 354 >gi|300917670|ref|ZP_07134319.1| signal peptide peptidase SppA [Escherichia coli MS 115-1] gi|300415071|gb|EFJ98381.1| signal peptide peptidase SppA [Escherichia coli MS 115-1] Length = 666 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 367 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 426 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 427 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 486 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 487 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 545 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 546 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 604 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 605 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 633 Score = 99.7 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 67 LNFVREMVLNLFFIFLVLVGVGIWMQVSGDDSKETASRGALLLDISGVIVDKPDSSQRFS 126 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 127 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 186 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 187 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 246 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 247 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 306 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 307 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 354 >gi|293415083|ref|ZP_06657726.1| signal peptide peptidase SppA [Escherichia coli B185] gi|291432731|gb|EFF05710.1| signal peptide peptidase SppA [Escherichia coli B185] Length = 666 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 367 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 426 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 427 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 486 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 487 TTVENSLDSIGVHTDGVSTSPLADV-SITKALPPEAQQMMQLSIENGYKRFITLVADARH 545 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 546 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 604 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 605 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 633 Score = 100 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 67 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 126 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 127 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 186 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 187 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 246 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 247 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 306 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 307 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 354 >gi|260597600|ref|YP_003210171.1| protease 4 [Cronobacter turicensis z3032] gi|260216777|emb|CBA30223.1| Protease 4 [Cronobacter turicensis z3032] Length = 616 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 69/277 (24%), Positives = 121/277 (43%), Gaps = 22/277 (7%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPG 77 + + +A + G I D +E +I D A+++ ++SPG Sbjct: 315 PVNKPSEQGESIAVVFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPG 374 Query: 78 GSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GS A E I + + K KP++ + MAAS GY IS ++ IVA ++L GSIG+ Sbjct: 375 GSVTASETIRQELAAAKEAGKPIVVSMGGMAASGGYWISTPASYIVANPSTLTGSIGIFG 434 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 V+ LD +GV V +SP+ + P+ ++MQ +++ Y F+ LV++S Sbjct: 435 VINTVENSLDSIGVHTDGVATSPLADVSVT-KALPPEVQKLMQLTIENGYQRFIGLVAQS 493 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R+ + ++ G +WTG +AK+ GL+D +G ++ + L + + Sbjct: 494 RHKTPQQIDQIAQGHVWTGEDAKQNGLVDSLGDFDDAVKKAAELAKL-KTWHLDFYQDEP 552 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 + L NL+ S + W P Sbjct: 553 GFVDMVLANLTGSV----------HAMLPQALQAWLP 579 Score = 82.7 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 79/208 (37%), Gaps = 11/208 (5%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASA 110 +++ I + D + T +++ L G+ + I +A+++ ++ + + E + Sbjct: 97 DIVNAIRQAKDDRNITGIVLDLKDFAGADQPSMQYIGKALREFRDAGKPVYAIGESYSQG 156 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168 Y ++ +N I + V G Y K LDKL V+ + K+ PF Sbjct: 157 QYYLASFANKIWLSPQGTVDLHGFATNGLYYKSLLDKLKVTTHVFRVGTYKSAVEPFIRD 216 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKK 220 +++P+A + + + ++ ++ +R +P + L T A Sbjct: 217 DMSPEAREADSRWIGELWQNYLGTLAANRQVPASQIFPGAQAMIAGLEAAGGDTAKYALD 276 Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+D + + ++L K Sbjct: 277 NKLVDELASSATIDKALVKQFGWSDKDK 304 >gi|255594924|ref|XP_002536196.1| Protease, putative [Ricinus communis] gi|223520527|gb|EEF26187.1| Protease, putative [Ricinus communis] Length = 572 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 66/287 (22%), Positives = 131/287 (45%), Gaps = 18/287 (6%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLS 74 Y + + + + I G I D ++ L + + + DD A+++ + Sbjct: 262 YLTATRSLPGGHDKIGVIVASGMILDGEQRAGLVGGDTLSDLLRQARDDDDVKAVVLRVD 321 Query: 75 SPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 S GGSA+A E I + + +++ KPV+ + +AAS GY IS +++ + A ++ GSIG Sbjct: 322 SEGGSAFASEIIRQQLLELQAADKPVVVSMGSVAASGGYWISASADEVWATPATITGSIG 381 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + +P V L KLGV V ++ + V+P +Q +++ Y F+ +V Sbjct: 382 IFGAFPTVDKSLAKLGVHTDGVGTTAIADAFRVDRPVSPAVAGAIQSGIEAGYQRFLTVV 441 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK--IKD 251 +E R + + G++W G++A+++GL+D +GG E+ + L + ++ I+ Sbjct: 442 AEGREMDKAAVDKIGQGQVWAGSDAQRIGLVDHLGGLEDAVGAAAKLAELKDYQQELIEP 501 Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQ------TKVQGLWAVWN 292 P+ L ++ L I + + + L +W Sbjct: 502 PRSPQELLIERLSGVAEKLSLASHIDVHRPGAFGLTRSLGPLAPLWR 548 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 32/251 (12%), Positives = 84/251 (33%), Gaps = 16/251 (6%) Query: 52 ELIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 ++I+ I+ ++D L++ + + + +AI + + + + Sbjct: 46 DMIKAIDTAAKDARIKVLVIQTDAMEYAGLSKLQELAQAIARFRETGKPVIATGDNFNQD 105 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168 Y ++ ++ +V V G P+ K LDKL V + K+ PF Sbjct: 106 QYWLAAQADRVVMNPMGEVLLQGYGVYTPFFKQALDKLDVDFHVFRVGTYKSAVEPFLRD 165 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--------RIWTGAEAKK 220 +++ + Q +++ + + V+ R I ++ + G A Sbjct: 166 DMSAEVKQNHLVWLNTLWQQYKDGVAARRKIGVERIDDYVNHIDRALAASNGDAGKAAVD 225 Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSI-----RKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 L+D + +EE +++ + +D+ + + Sbjct: 226 AKLVDTLQTREEFNRAMVDQVGEDDDGLYNAVDFRDYLTATRSLPGGHDKIGVIVASGMI 285 Query: 276 IPLMKQTKVQG 286 + ++ + G Sbjct: 286 LDGEQRAGLVG 296 >gi|157146039|ref|YP_001453358.1| protease 4 [Citrobacter koseri ATCC BAA-895] gi|157083244|gb|ABV12922.1| hypothetical protein CKO_01793 [Citrobacter koseri ATCC BAA-895] Length = 618 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 71/271 (26%), Positives = 121/271 (44%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDGIGVVFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + K KPV+ + MAAS GY IS ++ IVA ++L GSIG+ Sbjct: 379 VSASEVIRAELAAAKAAGKPVVVSMGGMAASGGYWISTPASYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+ QMMQ +++ Y F+ LV+++R Sbjct: 439 NTVENSLDSIGVHTDGVATSPLADVSVTKS-LPPEVQQMMQLSIENGYKRFITLVADARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPAQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAIAKAAELAKL-KQWHLEYYQDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + ++S S + +P Q + A Sbjct: 557 FDRIMDSMSGS--VRAMLPEAIQAMLPAPLA 585 Score = 96.2 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 102/282 (36%), Gaps = 40/282 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S + + + + I G I D Sbjct: 19 LNFVRELVLNLFFIFLVLVGVGIWMQLSDGNTSQQTARGALLLDISGVIVDKPSSTNRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G+ + I +A+ Sbjct: 79 VIGRQLFGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGADQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V + + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPVFAVGDSYSQGQYYLASFANKIWLSPQGTVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + DG T A L+D + EV ++L Sbjct: 259 QAMLDGLSKVDGDTAKYALDNKLVDALASNAEVEKALTKQFG 300 >gi|126657415|ref|ZP_01728574.1| Peptidase S49, protease IV [Cyanothece sp. CCY0110] gi|126621402|gb|EAZ92114.1| Peptidase S49, protease IV [Cyanothece sp. CCY0110] Length = 597 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 114/245 (46%), Gaps = 9/245 (3%) Query: 30 HVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSA 80 +S +A + + G I D + + +I D+ A+++ ++SPGGSA Sbjct: 303 TDNSSSNKIAVVYLEGAIVDGIGNREQVGGTRFAKLLRKIGDDEQVKAVVIRINSPGGSA 362 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + I R IQ ++ KPVI + +AAS GY I+ I A ++ GSIGV Sbjct: 363 TGSDIILREIQLIQETKPVIISMGNVAASGGYWIATGGEHIFAQPNTITGSIGVFGVLLN 422 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 ++ + G++ +VK++ + + + + Q V+ Y F+ V++SRN+ Sbjct: 423 IQEIANNNGITWDTVKTAKFADLGTATRPKTEQELAIYQKSVNRIYDLFLEKVAQSRNLS 482 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 +K ++ GR+W+G AKK+GL+D GG + +++++ + + Sbjct: 483 KEKVASIAQGRVWSGEMAKKIGLVDSFGGLNAAIEYAAKQTELGKDWQVQEYPTSQGFAE 542 Query: 261 CDLKN 265 LK Sbjct: 543 LFLKR 547 Score = 98.5 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 114/265 (43%), Gaps = 25/265 (9%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------- 51 + T + S+V L + S + V + + QI+D + Sbjct: 20 FLFTTVGVSSIVILLITLASVETEPAIKDKSVLVLDLSTQIQDKEPFVNIRDILSDKDQS 79 Query: 52 -----ELIERIERISRDDSATALIVSLSSPG-GSAYAGE-AIFRAIQKVKNRKPVITEVH 104 ++I+ IE+ S+DD A+ + S+ GS YA I +A+ K K I Sbjct: 80 VLTLSQVIKNIEKASKDDRIKAIFLDGSNANSGSGYASFAEIRQALIKFKESGKKIIAYD 139 Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 + Y ++ ++ ++ +V G+ + + LD+ G+ ++ V+ KA Sbjct: 140 ITVSEQEYYLTSLADTLIVNPMGVVELNGISTEPLFWTGALDRYGIGVQVVRVGEYKAAV 199 Query: 165 SPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKV 221 PF ++++ + Q ++ ++ + ++ F++ V E R I + ++D I T EA+K+ Sbjct: 200 EPFIRTQLSEENRQQLEVLLGNIWNNFLQKVGEVRKIEANNLQQIADNQGILTPQEAQKL 259 Query: 222 GLIDVVGGQEEVWQSLYALGVDQSI 246 LID V +++ L + ++ Sbjct: 260 KLIDQVDYRDQAISLLKEITKNKEE 284 >gi|72382638|ref|YP_291993.1| signal peptide peptidase A [Prochlorococcus marinus str. NATL2A] gi|72002488|gb|AAZ58290.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Prochlorococcus marinus str. NATL2A] Length = 269 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 69/264 (26%), Positives = 128/264 (48%), Gaps = 5/264 (1%) Query: 33 DNSPHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + +ARI I G I +++ +++I + AL++ + SPGG+ + I A+ Sbjct: 8 KSKKRMARICIEGPINSETRKIVLKALKQIEERE-FPALLLRIDSPGGTVGDSQEIHSAL 66 Query: 91 QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++ + V+ ++AS G I + IVA ++ GSIGV+ + + L+K+G Sbjct: 67 LRLREKGCHVVASFGNISASGGVYIGVGAEKIVANPGTITGSIGVILRGNNLSKLLEKVG 126 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + ++VKS K SP ++ + ++Q ++DSSY FV VS+ RN+ + +D Sbjct: 127 IKFETVKSGIYKDILSPDRPLSTEERALLQSLIDSSYEQFVLAVSKGRNLTPEVVKSFAD 186 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 GR++TG +AK+ GL+D +G + + + K + K L I Sbjct: 187 GRVFTGEQAKEFGLVDEIGDENDAKLLAIKIANLDEKTKPITFGKTKKKLLGFLPGGKII 246 Query: 270 SLLEDTIPLMKQTKVQGLWAVWNP 293 L + + L + Q LW ++ P Sbjct: 247 HNLVNALNLELEGNGQILW-LFKP 269 >gi|117623937|ref|YP_852850.1| protease 4 [Escherichia coli APEC O1] gi|218558634|ref|YP_002391547.1| protease 4 [Escherichia coli S88] gi|237705717|ref|ZP_04536198.1| protease IV [Escherichia sp. 3_2_53FAA] gi|115513061|gb|ABJ01136.1| protease IV [Escherichia coli APEC O1] gi|218365403|emb|CAR03126.1| protease IV (signal peptide peptidase) [Escherichia coli S88] gi|226900474|gb|EEH86733.1| protease IV [Escherichia sp. 3_2_53FAA] gi|315286440|gb|EFU45875.1| signal peptide peptidase SppA [Escherichia coli MS 110-3] gi|323952272|gb|EGB48145.1| signal peptide peptidase SppA [Escherichia coli H252] gi|323956534|gb|EGB52275.1| signal peptide peptidase SppA [Escherichia coli H263] Length = 618 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 99.3 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAARETDSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 306 >gi|311279913|ref|YP_003942144.1| signal peptide peptidase SppA, 67K type [Enterobacter cloacae SCF1] gi|308749108|gb|ADO48860.1| signal peptide peptidase SppA, 67K type [Enterobacter cloacae SCF1] Length = 617 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 79/281 (28%), Positives = 130/281 (46%), Gaps = 15/281 (5%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATAL 69 ++ ++ + + S VA I G I D QE +I D A+ Sbjct: 309 AVSFYDYTLKTPSDQGSA-VAVIFANGAIIDGQETPGNVGGDTTAAQIRDARLDPKVKAI 367 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 ++ ++SPGGS A E I + + KPV+ + MAAS GY IS +N IVA ++L Sbjct: 368 VLRVNSPGGSVSASEVIRAELAAAREANKPVVVSMGGMAASGGYWISTPANYIVANASTL 427 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIG+ V+ L LGV V +SP+ S + P+ QMMQ ++S Y Sbjct: 428 TGSIGIFGVINTVENSLSNLGVHTDGVSTSPLADVSITKS-LPPEVQQMMQLSIESGYKR 486 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 F+ LV++SR+ ++ ++ G +WTG +AK GL+D +G ++ L Sbjct: 487 FITLVAQSRHSTPEQVDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKL-KQWH 545 Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 I + +++ L +L+ S + ++P Q + A Sbjct: 546 ISYYQEEPSFFSMMLDSLTGS--VRASLPEALQAFLPAPLA 584 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 102/281 (36%), Gaps = 39/281 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + FV + + +++L LV + V S+ + + + I G + D Sbjct: 19 LNFVRELVLNVFFILLVLVCVGVWMQLSSNIAQSTARGALLLDISGVVVDKPSATSKIGT 78 Query: 52 -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91 ++++ I + D + T +++ L + G+ + I +A++ Sbjct: 79 LSRQLLGASSDRLQENSLFDIVQTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALR 138 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + ++ + V + + Y ++ +N I + +V G Y K LDKL V+ Sbjct: 139 EFRDSGKPVFAVGDSYSQGQYYLASFANKIFLSPQGIVDLHGFATNGLYYKSLLDKLKVT 198 Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT----- 204 + K+ PF +++P A + + + ++ V+ +R I ++ Sbjct: 199 THVFRVGTYKSAVEPFIRDDMSPAAKEADSRWIGELWQNYLTTVAANRQITPEQVFPGAQ 258 Query: 205 ---LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 L T A L+D + +V + L Sbjct: 259 GMLDGLRKVDGDTAQYALNNKLVDSLATSAQVEKVLTKQFG 299 >gi|308231619|ref|ZP_07663897.1| signal peptide peptidase SppA, 36K type [Mycobacterium tuberculosis SUMu001] gi|308369979|ref|ZP_07666834.1| signal peptide peptidase SppA, 36K type [Mycobacterium tuberculosis SUMu002] gi|308216725|gb|EFO76124.1| signal peptide peptidase SppA, 36K type [Mycobacterium tuberculosis SUMu001] gi|308325733|gb|EFP14584.1| signal peptide peptidase SppA, 36K type [Mycobacterium tuberculosis SUMu002] Length = 289 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 120/246 (48%), Gaps = 5/246 (2%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEM 106 + + ++ DDS +A+++ + SPGGS A E I+R + + ++R KPV+ + + Sbjct: 24 AGGDTIAAALREVAADDSVSAIVLRVDSPGGSVTASETIWREVARARDRGKPVVASMGAV 83 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 AAS GY +S ++ IVA ++ GSIGV+ V+ D+LGV +V+++ S Sbjct: 84 AASGGYYVSMGADAIVANPGTITGSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSI 143 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 + P + D Y FV V+E R + D V++ GR+WTGA+A GL+D Sbjct: 144 DAPFTPDQQAHREAEADLFYSDFVERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDE 203 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQT 282 +GG + L +++ + P + + ++ + ++ L D + + Sbjct: 204 LGGLRTAVRRAKVLAGLDEDTEVRIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLAR 263 Query: 283 KVQGLW 288 + G+ Sbjct: 264 SIVGIV 269 >gi|91775677|ref|YP_545433.1| peptidase S49 [Methylobacillus flagellatus KT] gi|91709664|gb|ABE49592.1| peptidase S49 [Methylobacillus flagellatus KT] Length = 312 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 17/275 (6%) Query: 6 KKIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERI 57 ++ + L + L ++ F W+ + H A I I G I ++ +I + Sbjct: 31 RQWGIFFKSLGFLYLFIILFYITGWNEGRSASMEHTALIDIDGVIGSDDVVNADSVIASL 90 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAGYLI 114 + +I+ ++SPGGS I I++ + P+ V ++ AS GY I Sbjct: 91 KSAYESKGTKGIILRINSPGGSPVQAGIINDEIKRQRKLHPNIPIYAVVQDVCASGGYYI 150 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I + S+VGSIGVL +DK+GV + + + K PFS V+PK Sbjct: 151 AVAADKIFVDKASIVGSIGVLMDGFGFTGAMDKVGVERRLMTAGENKGMLDPFSPVSPKH 210 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 + Q ++D + F+ +V E R +T G W+G + +GL D G + V Sbjct: 211 REFAQQMLDQIHAQFIAVVREGRGKRLKETPETFSGLFWSGESSVAMGLADGFGSSDYVA 270 Query: 235 QSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 + + + D+ + K L S Sbjct: 271 REVIKQ------ENLVDFTAKEGLADRFAKRLGAS 299 >gi|170717625|ref|YP_001784706.1| signal peptide peptidase SppA, 67K type [Haemophilus somnus 2336] gi|168825754|gb|ACA31125.1| signal peptide peptidase SppA, 67K type [Haemophilus somnus 2336] Length = 621 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 65/265 (24%), Positives = 133/265 (50%), Gaps = 17/265 (6%) Query: 5 LKKIKTRYVM-----LSLVTLTVVYFSWSSHVEDN-SPHVARIAIRGQIEDSQE------ 52 +KI R+++ L V + P +A + + G I D + Sbjct: 287 REKIIKRWIVNSDDKLDFVEFEDYLAILKNRFAQPTQPAIAVVNVEGAIVDGESDEQNVG 346 Query: 53 ---LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAA 108 + + + + D + A+++ ++SPGGSA+A E I + + ++ KPV+ + MAA Sbjct: 347 GDSIAQLLREANDDPNIKAVVLRVNSPGGSAFASEIIRQEVDNLQKSGKPVVVSMGAMAA 406 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 S GY IS ++ IVA ++ GSIG+ +P + + K+GV+ V ++ + + FS Sbjct: 407 SGGYWISSTADYIVADPNTITGSIGIFAMFPTFEKSMQKIGVNADGVATTDVVMKSH-FS 465 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 ++ + +++Q ++ Y F+ +VS RN+ + ++ G++W+G +A L+D +G Sbjct: 466 PLSKISSEIIQLEIEHGYDQFLDVVSRGRNLSKTQVDKIAQGQVWSGFDAYTYKLVDQLG 525 Query: 229 GQEEVWQSLYALGVDQSIRKIKDWN 253 ++ + L + +S +IKD++ Sbjct: 526 SFDDAVEKARELVIQKSSEEIKDFS 550 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 55/319 (17%), Positives = 126/319 (39%), Gaps = 38/319 (11%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------ 51 V+ + +V+L + +V + + + + G + D++ Sbjct: 22 VMNIVFLFFVLLIVAVFSVNSSMSNKVDLTHFKGALLLNLDGYLADNRSDDTAWQELLLE 81 Query: 52 -------------ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRK 97 +++ I+ +D TAL++ L+ G A I +AIQ K K Sbjct: 82 LGNQHVPRKISTFDVVNAIQAAKKDPKITALVLDLNYFDGKDIPALTYIGKAIQAFKASK 141 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + YL++ +++I+ V G++ + Y K +KL ++ + Sbjct: 142 KPVIAYADNYTQSQYLLASYADVILLNPQGEVAIEGMVAENLYFKSLFNKLEITPHIFRV 201 Query: 158 SPMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-----LSDG 210 K+ PF +++ K+ + ++ + + ++V+E+R+IP + L LS+ Sbjct: 202 GTYKSAVEPFMLDKMSEKSRENTSRWLNQLWKSYQQIVAENRDIPLAQVLPDSKTYLSEL 261 Query: 211 RIWTGAE---AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G + AKK GLI + +E + + + S K+ D+ ++Y + Sbjct: 262 KALNGNQTEYAKKRGLITELAVTQE-REKIIKRWIVNSDDKL-DFVEFEDYLAILKNRFA 319 Query: 268 ISSLLEDTIPLMKQTKVQG 286 + + ++ V G Sbjct: 320 QPTQPAIAVVNVEGAIVDG 338 >gi|156934334|ref|YP_001438250.1| protease 4 [Cronobacter sakazakii ATCC BAA-894] gi|156532588|gb|ABU77414.1| hypothetical protein ESA_02165 [Cronobacter sakazakii ATCC BAA-894] Length = 616 Score = 135 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 71/277 (25%), Positives = 121/277 (43%), Gaps = 22/277 (7%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPG 77 + + +A + G I D +E +I D A+++ ++SPG Sbjct: 315 PVNKPSEQGESIAVVFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPG 374 Query: 78 GSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GS A E I + + K KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 375 GSVTASETIRQELAAAKEAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFG 434 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 V+ LD +GV V +SP+ + P+ ++MQ +++ Y F+ LV++S Sbjct: 435 VINTVENSLDAIGVHTDGVATSPLAEVSVT-KALPPEVQKLMQLTIENGYQRFIGLVAQS 493 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 RN + ++ G +WTG +AK+ GL+D +G ++ + L + + Sbjct: 494 RNKTPQQIDQIAQGHVWTGEDAKQNGLVDSLGDFDDAVKKAAELAKL-KSWHLDFYQDEP 552 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 + + NL+ S + W P Sbjct: 553 GFIDMVIANLTGSV----------HAMLPQALQAWLP 579 Score = 85.4 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 78/208 (37%), Gaps = 11/208 (5%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASA 110 +++ I + D + T +++ L G+ + I +A+++ ++ + + + + Sbjct: 97 DIVNAIRQAKDDRNITGIVLDLKDFAGADQPSMQYIGKALREFRDAGKPVYAIGDSYSQG 156 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168 Y ++ +N I + V G Y K LDKL V+ + K+ PF Sbjct: 157 QYYLASFANKIWLSPQGTVDLHGFATNGLYYKSLLDKLKVTTHVFRVGTYKSAVEPFIRD 216 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKK 220 +++P A + + + ++ ++ +R +P + L T A Sbjct: 217 DMSPAAREADSRWIGELWQNYLGTIAANRQVPASQIFPGAQAMIAGLEAAGGDTAKYALD 276 Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+D + V ++L K Sbjct: 277 NKLVDELASSATVDKALVKQFGWSDKDK 304 >gi|304408856|ref|ZP_07390477.1| signal peptide peptidase SppA, 67K type [Shewanella baltica OS183] gi|307302859|ref|ZP_07582614.1| signal peptide peptidase SppA, 67K type [Shewanella baltica BA175] gi|304352677|gb|EFM17074.1| signal peptide peptidase SppA, 67K type [Shewanella baltica OS183] gi|306913219|gb|EFN43641.1| signal peptide peptidase SppA, 67K type [Shewanella baltica BA175] Length = 615 Score = 135 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 14/268 (5%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 V I G I + E + + D AL++ + SPGGSA+A Sbjct: 322 VEQDSVGIIVASGTILNGTQPAGQIGGESTAELLRKARFDKHVKALVLRVDSPGGSAFAS 381 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + + +K KPV+ + +AAS GY IS +++ I A T+L GSIG+ + Sbjct: 382 EQIRQELLALKAAGKPVVVSMGSLAASGGYWISASADYIFATPTTLTGSIGIFGMITTFE 441 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L +GV V +S + ++P+ ++Q ++ Y F+ LV++ R + + Sbjct: 442 DSLASIGVHTDGVSTSEWAGLSVTRT-LSPQVEAIIQRHIERGYLDFISLVAKERKMTIE 500 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFC 261 + ++ GR+W+G +A ++GL+D +G +E L ++ + F Sbjct: 501 QVDKIAQGRVWSGKKALELGLVDELGDLDEAIAKAAKLADMTLFDTRVIEQELTPEQRFM 560 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289 S+SS L ++ + + ++ + A Sbjct: 561 QQMFASVSSYLPASLS--QSSMLEQMLA 586 Score = 84.7 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 34/273 (12%), Positives = 90/273 (32%), Gaps = 36/273 (13%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51 +K+ + ++ ++ S ++ + + G I D + Sbjct: 23 RKLILNLIFFGILAAIIISIGSSEDIQVEDNSALVLNLAGSIVDQKQQVDPLEAAFKQGQ 82 Query: 52 -----------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRKPV 99 +++ I+ ++D + L+++ ++I A+ + K Sbjct: 83 NANADGEILLADVLYVIDNAAQDQRISTLVLNLADLKRAGISKLQSIGDALNRFKESGKK 142 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 + + Y ++ ++ I V G+ Y K LDKL + + Sbjct: 143 VVAIGNYYEQNQYFLASFADTIYLNPQGGVSLDGLSMYNQYFKSALDKLKIKAHIFRVGT 202 Query: 160 MKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSD 209 K+ P+ +++ A + ++ + + + V+ +RNI + L Sbjct: 203 FKSAVEPYMRDDMSDAAREASSALLADVWQSYTQTVAGNRNIEPNSLVPDATTYLAELDK 262 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + A A + +D + E+ Q++ Sbjct: 263 ANGDSAAMAINMKWVDSLATTEDFRQTMLETVG 295 >gi|300818408|ref|ZP_07098618.1| signal peptide peptidase SppA [Escherichia coli MS 107-1] gi|300529048|gb|EFK50110.1| signal peptide peptidase SppA [Escherichia coli MS 107-1] Length = 666 Score = 135 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 367 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 426 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 427 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 486 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 ++ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 487 TTIENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 545 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 546 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 604 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 605 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 633 Score = 98.5 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 67 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 126 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 127 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 186 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 187 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 246 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 S + K+ PF +++P A + + + ++ V+ +R IP + + Sbjct: 247 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRLIPAQQVFPGA 306 Query: 209 DGRIW--------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 G + T A + L+D + E+ ++L K Sbjct: 307 QGLLVGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 354 >gi|71278898|ref|YP_269300.1| signal peptide peptidase SppA, 67K type [Colwellia psychrerythraea 34H] gi|71144638|gb|AAZ25111.1| signal peptide peptidase SppA, 67K type [Colwellia psychrerythraea 34H] Length = 637 Score = 135 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 65/265 (24%), Positives = 123/265 (46%), Gaps = 11/265 (4%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPG 77 + E + VA I +G I D + + + +D A+++ + SPG Sbjct: 325 SAELAEKSHDKVAIIVAKGTILDGTQKPGTIGGDSTAKLLRKARNNDDVKAVVLRVDSPG 384 Query: 78 GSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GSAYA E I + ++ +K KPV+ + AAS GY IS ++ I AA +++ GSIG+ Sbjct: 385 GSAYASEIIRQEVELLKKAGKPVVASMGTYAASGGYWISAPADKIYAAPSTITGSIGIFG 444 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + L K+G+ V ++ + SP + P + Q ++ Y F++LV+ + Sbjct: 445 MMMTFEDTLSKMGIYTDGVGTTDIAG-FSPTQALTPGMANLFQLSINRGYQEFIQLVATN 503 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R++ ++ ++ GR+W+G +AK++GL+D +G + + L + + Sbjct: 504 RDMTLEEVDAIAQGRVWSGKKAKELGLVDELGNLTDAVVAAATLAKLEQYDTLLIEKEQS 563 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQ 281 + + L SS L ++ Sbjct: 564 SRNKIMQQLLGQSSTLVSLFSANEE 588 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 103/313 (32%), Gaps = 38/313 (12%) Query: 1 MEFVLKKIKTR-YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + F + + +L + V+ S V + + G + + + Sbjct: 19 LTFTRSVVLNLVFFILLFSFIGVILSSGEEQVTVPEKTALVLNLVGDVVEQKREVDPMEA 78 Query: 52 ------------------ELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIFRAIQK 92 ++I+ I + +DD L++ L + I A++ Sbjct: 79 FLSEAMEQQDDKPEVLLTDIIDVISKAKKDDRVEILVLQLQGLNRAGLTKLQDIAAALED 138 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 K+ I + + + Y ++ +N I + G Y K L+KL ++ Sbjct: 139 FKSSGKQIIALGDQFSQDQYYLASTANDIWLNPQGFMLLDGYGRYNMYFKSALEKLAINQ 198 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 + K+ PF +++ A + + + + + V+ R D D Sbjct: 199 HIFRVGTFKSAVEPFIRDDMSDAAKKANKLWLADLWMQYKEDVAARRGFGVDNFDENIDN 258 Query: 211 RI--WTGAE------AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + ++ A+ A K +D + ++E+ L L + + KNY Sbjct: 259 LVAKFSAADSSFAQYALKNNWVDQLKSRQEMRSELIELVGENKKGDSYNHIGYKNYIAAT 318 Query: 263 LKNLSISSLLEDT 275 ++ S+ L + Sbjct: 319 SSSIEESAELAEK 331 >gi|119511127|ref|ZP_01630245.1| protease IV [Nodularia spumigena CCY9414] gi|119464222|gb|EAW45141.1| protease IV [Nodularia spumigena CCY9414] Length = 611 Score = 135 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 62/266 (23%), Positives = 121/266 (45%), Gaps = 9/266 (3%) Query: 33 DNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAG 83 ++ +A + G+I D + ++ D+ A+++ ++SPGGSA A Sbjct: 314 NSQNKIAVVYAEGEIVDGRGEDQQIGGDRFARILNQLRHDNDVKAVVLRINSPGGSATAS 373 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 E + R +Q + KPV+ + ++AAS GY I+ SN I A T++ GSIGV + Sbjct: 374 EIMQREVQLTREVKPVVVSMGDIAASGGYWIATDSNRIFAEPTTITGSIGVFGVLLNGQK 433 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 + G++ +VK++ +P +P+ +++ Q V+ Y+ F+ V + RN+P K Sbjct: 434 LANDNGITWDTVKTARYADSQTPTRPKSPQELEIYQRSVNRIYNLFLDRVVQGRNLPAPK 493 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ GR+W+G AK++GL+D +GG + + +++++ Sbjct: 494 VAEIAQGRVWSGISAKQIGLVDEIGGLNAAIEYAAKEAKLDNDWELQEYPRVSTLEERFF 553 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289 + + L A Sbjct: 554 GRAIQEITTMLGMAGVSVQPSHPLMA 579 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 56/302 (18%), Positives = 114/302 (37%), Gaps = 31/302 (10%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS----------------------QEL 53 + L V S + + + + I D+ + + Sbjct: 30 IIFLLFAVTTSRDTTPQVKDQSIVVFDLSMNITDTPPGSSELLQQALSGAEAPRMTLRSV 89 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGE----AIFRAIQKVKNRKPVITEVHEMAAS 109 ++ +E+ D + + + S G I +A++K + + + Sbjct: 90 LDTLEKARLDPRIVGIYLDATGTSASGNMGFASLTEIRQALKKFRESGKKVVAYGVGLSE 149 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y +S ++ I L+ G+ Q ++ LDK G+ ++ V+ K PF Sbjct: 150 KDYYLSSVADTITLNPIGLMEVNGLTSQPTFLAGALDKFGIGVQVVRVGKFKGAVEPFIL 209 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDV 226 E++P+ Q +Q ++D + + VS SR + + ++D + T EAK+ GL+D Sbjct: 210 QELSPENRQQIQKLLDDVWGDWRTTVSSSRKMTPQQLQAIADTQALLTATEAKERGLVDQ 269 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM--KQTKV 284 VG +EV L L + + +NY K+L + ++ I ++ + V Sbjct: 270 VGYLDEVVNDLKKLTASDETDRTFEQINLRNYAQVPGKSLGVERNSQNKIAVVYAEGEIV 329 Query: 285 QG 286 G Sbjct: 330 DG 331 >gi|218689707|ref|YP_002397919.1| protease 4 [Escherichia coli ED1a] gi|218427271|emb|CAR08161.2| protease IV (signal peptide peptidase) [Escherichia coli ED1a] Length = 618 Score = 135 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 98.9 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 306 >gi|319776392|ref|YP_004138880.1| protease IV (signal peptide peptidase) [Haemophilus influenzae F3047] gi|317450983|emb|CBY87213.1| protease IV (signal peptide peptidase) [Haemophilus influenzae F3047] Length = 615 Score = 135 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 68/256 (26%), Positives = 127/256 (49%), Gaps = 14/256 (5%) Query: 36 PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 +A + + G I D + ++ + + D+S A+I+ ++SPGGSA+A E I Sbjct: 322 NKIAVVNVEGTIIDGESDEENAGGDTIVRILRKAHDDNSVKAVILRVNSPGGSAFASEII 381 Query: 87 FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + + ++ KPVI + MAAS GY IS ++ I+A ++ GSIG+ +P + + Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFAMFPTFENSI 441 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV+ V ++ + + F + + Q ++ Y F+ +VS+ R + + Sbjct: 442 KKIGVNADGVSTTELAKTSAFF-PLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVD 500 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L+ G++W G++A + GL+D +G E L + ++D++ WF D Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 557 Query: 266 LSISSLLEDTIPLMKQ 281 IS+LL DT ++ Sbjct: 558 SLISTLLRDTKKGAQE 573 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 55/287 (19%), Positives = 110/287 (38%), Gaps = 44/287 (15%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA----RIAIRGQIEDSQE------- 52 ++ + V L V L V S+SS + ++ + + + G + D+++ Sbjct: 14 FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTTLIGDGALLLNLDGYLADNRDETLRWQD 73 Query: 53 ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93 ++ I++ D L++ L+ G A + I AI Sbjct: 74 ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHF 133 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K+ + + + Y ++ ++ I V G+ + Y K LDKL V+ Sbjct: 134 KDAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF ++++ +A MQ + ++ +V VSE+RNI D L + + Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDNI--LPNAK 251 Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + A++ GL+ V + ++ + L AL S K Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKKLAALFGKGSDGK 298 >gi|148653534|ref|YP_001280627.1| signal peptide peptidase SppA, 36K type [Psychrobacter sp. PRwf-1] gi|148572618|gb|ABQ94677.1| signal peptide peptidase SppA, 36K type [Psychrobacter sp. PRwf-1] Length = 354 Score = 135 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 60/259 (23%), Positives = 115/259 (44%), Gaps = 11/259 (4%) Query: 29 SHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 S V+ PH+A + ++G I ++ ++ + A A++++++SPGGS Sbjct: 88 SSVDVTKPHIAVVDLQGVISADNTANAYDVSAALSEAFESKGAKAVVLNINSPGGSPVQS 147 Query: 84 EAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + I++ + + K + + +M AS Y I+ A++ I +SLVGSIGV+ Sbjct: 148 DEIWKTMMSLRKEHPNKKLYAVIGDMGASGAYYIASAADEIYVNPSSLVGSIGVIMPGYN 207 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 +K +DK GV ++ + K S ++ Q ++ V+D+++ F+ V + R Sbjct: 208 LKGLMDKYGVKDATLTAGEYKDILSMSRDLTDFEKQHIKGVLDNTHKHFIDAVKKGRGDR 267 Query: 201 YD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + L G WTG +A +GL D G + + L + + N Sbjct: 268 LKNPEENKLFTGLFWTGEQAIALGLADKKGSLMSLEKEL-DIDNVVDYTPVDPMQMFLNN 326 Query: 259 WFCDLKNLSISSLLEDTIP 277 + L + SS+ +P Sbjct: 327 FALQLGSGIGSSVELKLLP 345 >gi|298492790|ref|YP_003722967.1| signal peptide peptidase SppA ['Nostoc azollae' 0708] gi|298234708|gb|ADI65844.1| signal peptide peptidase SppA, 67K type ['Nostoc azollae' 0708] Length = 611 Score = 135 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 112/242 (46%), Gaps = 9/242 (3%) Query: 33 DNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAG 83 ++ +A + G+I D + +I +D ++++ ++SPGGSA Sbjct: 314 NSENKIAVVYAEGEIVDGKGEDGEIGGDRFAKIFNKIRQDQDVKSVVLRINSPGGSATVS 373 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 E I R I+ + KPVI + ++AAS GY I+ SN I A ++ GSIGV + Sbjct: 374 EIIQREIKLTRQAKPVIVSMGDVAASGGYWIASDSNRIFAETNTITGSIGVFGLLLNGQK 433 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 G++ +VK++ + +P+ + + Q V+ Y+ F+ V++ R +P K Sbjct: 434 LAKNNGITWDTVKTAQYADNQTVSRPKSPQELALYQRSVNRIYNMFINKVAQGRKLPQQK 493 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ GR+W+G AK++GL+D +GG + +++++ + Sbjct: 494 VAEIAQGRVWSGVAAKEIGLVDEIGGLNVAIEYAAKQAKLGKNWELEEYPRVTSLEERLF 553 Query: 264 KN 265 Sbjct: 554 GK 555 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 59/302 (19%), Positives = 109/302 (36%), Gaps = 31/302 (10%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS----------------------QEL 53 + + S + + + + +I DS +++ Sbjct: 30 LFFLIVIAATSKDTGPQVKDKSILVFDLSMKITDSQPSSSDFLKKTLIGVNEDQITLRKV 89 Query: 54 IERIERISRDDSATALIVS---LSSPGGSAYAGE-AIFRAIQKVKNRKPVITEVHEMAAS 109 IE +E+ RD + + + G YA I + + K + I Sbjct: 90 IETLEKAQRDPRIVGIYIDATKSGAASGLGYASLKEIRQGLDKFRASGKKIIAYSTDWNE 149 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y +S +N IV L+ G+ Q ++ L K GV I+ V+ K PF Sbjct: 150 REYYLSSVANNIVLNPVGLMEINGLSSQPVFLAGALQKYGVGIQVVRVGKFKGAVEPFIL 209 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDV 226 +++P+ Q Q ++D + + V +SR I K ++D + I +K GL+D Sbjct: 210 DKLSPENRQQTQKLLDDVWGEWRTSVGKSRKIQPQKLQAIADSQPILEANTSKTNGLVDQ 269 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM--KQTKV 284 V Q++V L L K +Y K++ + E+ I ++ + V Sbjct: 270 VAYQDQVVADLKKLTASDKDDKSFRQIHLSDYAEVPGKSMGVERNSENKIAVVYAEGEIV 329 Query: 285 QG 286 G Sbjct: 330 DG 331 >gi|226952101|ref|ZP_03822565.1| possible signal peptide peptidase SppA [Acinetobacter sp. ATCC 27244] gi|226837157|gb|EEH69540.1| possible signal peptide peptidase SppA [Acinetobacter sp. ATCC 27244] Length = 340 Score = 135 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 70/302 (23%), Positives = 130/302 (43%), Gaps = 27/302 (8%) Query: 4 VLKKIKTRYVMLSLVTLTVV--YFSWSSHVEDNSPHVARIAIRGQI--------EDSQEL 53 K + Y++ L+ + S + S H+A + I G I +S + Sbjct: 46 FFKFLGFAYLLFVLIAMGKGCSTSSTKTTTNITSDHLAVVDIIGTIDSSSGSSTVNSDDT 105 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASA 110 + ++R + A+ ++++SPGGS + I++ I+ + K V + +M AS Sbjct: 106 NKALKRAFEASGSKAVALNINSPGGSPVQSDEIWQEIRYLKKQHPDKKVYAVIGDMGASG 165 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 Y I+ A++ I+ +SLVGSIGV+ + KLG+ +++ S K S + Sbjct: 166 AYYIASAADEIIVNPSSLVGSIGVIMPNYGLSGLAQKLGIEDRTLTSGSNKDILSMTKPL 225 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGG 229 +P Q +Q V+D+ + F+ V E R + G WTG +A +G+ D G Sbjct: 226 DPAQKQHVQSVLDNVHAHFINAVKEGRGKRLKSNDPAIFSGLFWTGEQAVALGVADRSGS 285 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI------SSLLEDTIPLMKQTK 283 + + L ++ + D+ +N + L + SS L D + + K Sbjct: 286 MTTLMRDL-------NVSQKVDYTVQRNPFESILGRMGAKIGEGISSSLADQLQTQQNAK 338 Query: 284 VQ 285 +Q Sbjct: 339 IQ 340 >gi|294651086|ref|ZP_06728423.1| signal peptide peptidase SppA [Acinetobacter haemolyticus ATCC 19194] gi|292823035|gb|EFF81901.1| signal peptide peptidase SppA [Acinetobacter haemolyticus ATCC 19194] Length = 340 Score = 135 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 70/302 (23%), Positives = 130/302 (43%), Gaps = 27/302 (8%) Query: 4 VLKKIKTRYVMLSLVTLTVV--YFSWSSHVEDNSPHVARIAIRGQI--------EDSQEL 53 K + Y++ L+ + S + S H+A + I G I +S + Sbjct: 46 FFKFLGFAYLLFVLIAMGKGCSTSSTKTTTNITSDHLAVVDIIGTIDSSSGSSTVNSDDT 105 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASA 110 + ++R + A+ ++++SPGGS + I++ I+ + K V + +M AS Sbjct: 106 NKALKRAFEASGSKAVALNINSPGGSPVQSDEIWQEIRYLKKQHPDKKVYAVIGDMGASG 165 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 Y I+ A++ I+ +SLVGSIGV+ + KLG+ +++ S K S + Sbjct: 166 AYYIASAADEIIVNPSSLVGSIGVIMPNYDLSGLAQKLGIEDRTLTSGSNKDILSMTKPL 225 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGG 229 +P Q +Q V+D+ + F+ V E R + G WTG +A +G+ D G Sbjct: 226 DPAQKQHVQSVLDNVHAHFINAVKEGRGKRLKSNDPAIFSGLFWTGEQAVALGVADRSGS 285 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI------SSLLEDTIPLMKQTK 283 + + L ++ + D+ +N + L + SS L D + + K Sbjct: 286 MTTLMRDL-------NVSQKVDYTVQRNPFESILGRMGAKIGEGISSSLADQLQTQQNAK 338 Query: 284 VQ 285 +Q Sbjct: 339 IQ 340 >gi|33240745|ref|NP_875687.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238273|gb|AAQ00340.1| Periplasmic serine protease (ClpP class) [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 269 Score = 135 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 70/259 (27%), Positives = 128/259 (49%), Gaps = 4/259 (1%) Query: 33 DNSPHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + +ARI I G I S +++ + ++ D AL++ + SPGG+ + I A+ Sbjct: 8 KSKKRMARIIIDGPINGSTRKLVLKALRQV-EDREFPALLLRIDSPGGTVGDSQEIHAAL 66 Query: 91 QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++ + ++ ++AS G + A+ I+A ++ GSIGV+ + + L+K+G Sbjct: 67 LRLREKGCHIVASFGNISASGGVYVGVAAEKIIANPGTITGSIGVILRGNNLSKLLEKIG 126 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + +++KS K SP ++P+ ++Q ++DSSY FV V+E R + + +D Sbjct: 127 IKFETIKSGLYKDILSPDRALSPEERSLLQSLIDSSYEQFVTAVAEGRKLNKEDVKSFAD 186 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 GR++TG +AK++GLID G + + L + PK L + Sbjct: 187 GRVFTGTQAKQLGLIDDTGDENDARLLAAELADLDQKVRPITLGRPKKKLIGLLPGGKMF 246 Query: 270 SLLEDTIPLMKQTKVQGLW 288 S L +TI + T Q LW Sbjct: 247 SKLLETISMELSTSGQILW 265 >gi|301026499|ref|ZP_07189929.1| signal peptide peptidase SppA [Escherichia coli MS 69-1] gi|300395517|gb|EFJ79055.1| signal peptide peptidase SppA [Escherichia coli MS 69-1] Length = 618 Score = 135 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 98.9 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGVLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 306 >gi|258648041|ref|ZP_05735510.1| signal peptide peptidase SppA [Prevotella tannerae ATCC 51259] gi|260851896|gb|EEX71765.1| signal peptide peptidase SppA [Prevotella tannerae ATCC 51259] Length = 587 Score = 135 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 70/280 (25%), Positives = 126/280 (45%), Gaps = 17/280 (6%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------ELIERIERISRDDSATA 68 S + VA G I D+ ++I+ ++ ++ DD+ A Sbjct: 287 FTLSLLETEKGRKNKVAVYYAYGDIVDASTSSGGLRGDEIVGNQVIQDLDELANDDNIKA 346 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 +++ ++S GGSAYA E I+ A++ +K +KPV+ + AAS GY ISC ++ I+A T++ Sbjct: 347 VVLRVNSGGGSAYASEQIWHAVELLKKKKPVVVSMGGTAASGGYYISCGADKIIADPTTV 406 Query: 129 VGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 GSIG+ P + +KLG+ VK++ + + + +Q+ V+ Y Sbjct: 407 TGSIGIFGMIPDFSGLMTEKLGLHFDIVKTNEASDFGAMGRGMTAAEGEALQNYVNRGYG 466 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F++ V+ RN ++ ++ GR+WTG +A K+GLID +G E+ + L + Sbjct: 467 LFLKRVANGRNKTVEQINQVAQGRVWTGRQALKLGLIDQLGTLEDAIKEAARLAKLEKYD 526 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 P W D ++ + L Sbjct: 527 --VRRVPYITDWLTDYLQRQQDDYMDRKLRRSLGVYYDPL 564 Score = 95.4 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 37/271 (13%), Positives = 91/271 (33%), Gaps = 25/271 (9%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE------------------- 48 + + + LV L VV S S V +I + G I Sbjct: 18 MGAFTMAMGLVMLFVVSLSDSMKPTIARHSVLKITLSGTISERSAGANPLASILGNPMAD 77 Query: 49 --DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 +++ I + + + + + I +A+ K I + Sbjct: 78 EQGLDDILSAIRVAKDNKRIEGIYLDGGVVSTDVASLQEIRKALIDFKKSGKFIVSYADS 137 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + Y + ++ ++ ++ G+ + K L+K+GV ++ + K+ P Sbjct: 138 YSQGSYYVCSVADKVLLNPVGMLDWHGLSSNPIFYKDLLEKVGVKMQVFRVGTYKSFVEP 197 Query: 167 F--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD--GRIWTGAEAKKVG 222 + +E++P+ + ++ + V++SR +P + ++ + Sbjct: 198 YTRTEMSPENREQTAFLLGGLWKDLCTEVAQSRRLPVEAINNYANQYQNFADPSVYINEK 257 Query: 223 LIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 L+D + EEV L + + + + Sbjct: 258 LVDKLVYIEEVRNVLRDMVGGNRVSMVDPFT 288 >gi|221134873|ref|ZP_03561176.1| signal peptide peptidase SppA, 67K type [Glaciecola sp. HTCC2999] Length = 544 Score = 135 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 62/252 (24%), Positives = 117/252 (46%), Gaps = 14/252 (5%) Query: 30 HVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSA 80 +A + +G I D + + DD+ A+++ + SPGGSA Sbjct: 248 PKTVKGDAIAVVVAKGTILDGTQSPGTIGGDSTARLLRKARLDDNVKAVVMHVDSPGGSA 307 Query: 81 YAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 +A E I + ++++ KPV+ + AAS GY IS +++ I+A+ +++ GSIG+ Sbjct: 308 FASEIIRQEVEELRHAGKPVVALMGTYAASGGYWISASADKIIASPSTITGSIGIFGMLM 367 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + L LGV V+++ S + ++Q ++ Y F+ LV+E+RN+ Sbjct: 368 TYEESLAYLGVYSDGVQTTEF-GFNSLAKTLPDSLGNLIQRNIERGYEKFITLVAENRNM 426 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI---KDWNPPK 256 ++ ++ GR+W G A ++GL+D +G E S L + +P + Sbjct: 427 TLEQVDSIAQGRVWIGTTALELGLVDELGTLNEALSSAAELAELTDYEVTYIERTLSPKE 486 Query: 257 NYWFCDLKNLSI 268 + L+N S+ Sbjct: 487 QFIQELLRNASV 498 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 89/254 (35%), Gaps = 17/254 (6%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + +++ ++ +D AL++ LS GG + + I K + + + + + Sbjct: 20 DRNVVKALDNAKQDKRIAALVLDLSYFGGGGLHKLRTVAATIDDFKTSEKPVIAMGDYFS 79 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167 + Y ++ ++ I + G Y K ++KL V K K+ P+ Sbjct: 80 QSQYYLAAHADKIYLNPEGGMLFEGYSRNRMYYKEAIEKLKVKTHVFKVGTFKSAIEPYI 139 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEA 218 ++++ A + + + + + V+ +RNI D A Sbjct: 140 RNDMSDAAREANEAWLSVYWDQYKHDVAAARNIDVDNFDDTVANFMPKFEAANGDLAQYA 199 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSI------RKIKDWNPPKNYWFCDLKNLSISSLL 272 + G +D + +E++ Q + L + ++ N F +++ Sbjct: 200 LQNGWVDELKTREQMRQDMIDLVGESDSGNGYKGVTYSEYLQKINLPFPKTVKGDAIAVV 259 Query: 273 EDTIPLMKQTKVQG 286 ++ T+ G Sbjct: 260 VAKGTILDGTQSPG 273 >gi|74311916|ref|YP_310335.1| protease 4 [Shigella sonnei Ss046] gi|73855393|gb|AAZ88100.1| protease IV, a signal peptide peptidase [Shigella sonnei Ss046] Length = 618 Score = 135 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 99.7 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|26248024|ref|NP_754064.1| protease 4 [Escherichia coli CFT073] gi|91210983|ref|YP_540969.1| protease 4 [Escherichia coli UTI89] gi|110641888|ref|YP_669618.1| protease 4 [Escherichia coli 536] gi|215486982|ref|YP_002329413.1| protease 4 [Escherichia coli O127:H6 str. E2348/69] gi|218699668|ref|YP_002407297.1| protease 4 [Escherichia coli IAI39] gi|300938898|ref|ZP_07153600.1| signal peptide peptidase SppA [Escherichia coli MS 21-1] gi|300975717|ref|ZP_07173137.1| signal peptide peptidase SppA [Escherichia coli MS 200-1] gi|300994367|ref|ZP_07180872.1| signal peptide peptidase SppA [Escherichia coli MS 45-1] gi|301050891|ref|ZP_07197742.1| signal peptide peptidase SppA [Escherichia coli MS 185-1] gi|312966966|ref|ZP_07781184.1| signal peptide peptidase SppA, 67K type [Escherichia coli 2362-75] gi|331657804|ref|ZP_08358766.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA206] gi|26108427|gb|AAN80629.1|AE016761_204 Protease IV [Escherichia coli CFT073] gi|91072557|gb|ABE07438.1| protease IV, a signal peptide peptidase [Escherichia coli UTI89] gi|110343480|gb|ABG69717.1| protease IV [Escherichia coli 536] gi|215265054|emb|CAS09441.1| protease IV (signal peptide peptidase) [Escherichia coli O127:H6 str. E2348/69] gi|218369654|emb|CAR17423.1| protease IV (signal peptide peptidase) [Escherichia coli IAI39] gi|294489545|gb|ADE88301.1| protease 4 [Escherichia coli IHE3034] gi|300297410|gb|EFJ53795.1| signal peptide peptidase SppA [Escherichia coli MS 185-1] gi|300308679|gb|EFJ63199.1| signal peptide peptidase SppA [Escherichia coli MS 200-1] gi|300406213|gb|EFJ89751.1| signal peptide peptidase SppA [Escherichia coli MS 45-1] gi|300456158|gb|EFK19651.1| signal peptide peptidase SppA [Escherichia coli MS 21-1] gi|307553787|gb|ADN46562.1| protease IV [Escherichia coli ABU 83972] gi|307626750|gb|ADN71054.1| protease 4 [Escherichia coli UM146] gi|312288430|gb|EFR16332.1| signal peptide peptidase SppA, 67K type [Escherichia coli 2362-75] gi|315290471|gb|EFU49846.1| signal peptide peptidase SppA [Escherichia coli MS 153-1] gi|315299847|gb|EFU59087.1| signal peptide peptidase SppA [Escherichia coli MS 16-3] gi|324007104|gb|EGB76323.1| signal peptide peptidase SppA [Escherichia coli MS 57-2] gi|324011509|gb|EGB80728.1| signal peptide peptidase SppA [Escherichia coli MS 60-1] gi|331056052|gb|EGI28061.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA206] Length = 618 Score = 135 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 98.9 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 306 >gi|331647259|ref|ZP_08348353.1| signal peptide peptidase SppA, 67K type [Escherichia coli M605] gi|331044042|gb|EGI16178.1| signal peptide peptidase SppA, 67K type [Escherichia coli M605] Length = 622 Score = 135 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+ QMMQ +++ Y F+ LV+++R+ Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEVQQMMQLSIENGYKRFITLVADARH 501 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 560 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589 Score = 98.5 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 101/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 23 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 83 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 143 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 262 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E ++L K Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEFEKTLTKEFGWSKTDK 310 >gi|323978052|gb|EGB73138.1| signal peptide peptidase SppA [Escherichia coli TW10509] Length = 622 Score = 135 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 125/271 (46%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITKALPPEAQQMMQLSIENGYKRFITLVADARH 501 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L + ++ + + Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KLWHLEYYVDEPTF 560 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589 Score = 99.7 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 23 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 83 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + + E + Y ++ +N I + +V G Y K LDKL V Sbjct: 143 KEFRDSGKPVYAIGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 262 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 310 >gi|191171758|ref|ZP_03033305.1| protease 4 [Escherichia coli F11] gi|227885806|ref|ZP_04003611.1| S49 family peptidase IV [Escherichia coli 83972] gi|190908088|gb|EDV67680.1| protease 4 [Escherichia coli F11] gi|227837379|gb|EEJ47845.1| S49 family peptidase IV [Escherichia coli 83972] Length = 622 Score = 135 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 501 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 560 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589 Score = 98.9 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 23 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 83 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 143 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 262 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 310 >gi|323186946|gb|EFZ72264.1| signal peptide peptidase SppA, 67K type [Escherichia coli RN587/1] Length = 618 Score = 135 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKEDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLAKEFGWSKTDK 306 >gi|320194522|gb|EFW69153.1| Protease IV [Escherichia coli WV_060327] Length = 618 Score = 135 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 97.0 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 101/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++ A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSSAAREADSRWIGELWKNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 306 >gi|126174276|ref|YP_001050425.1| signal peptide peptidase SppA, 67K type [Shewanella baltica OS155] gi|125997481|gb|ABN61556.1| signal peptide peptidase SppA, 67K type [Shewanella baltica OS155] Length = 615 Score = 135 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 14/268 (5%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 V I G I + E + + D AL++ + SPGGSA+A Sbjct: 322 VEQDSVGIIVASGTILNGTQPAGQIGGESTAELLRKARFDKHVKALVLRVDSPGGSAFAS 381 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + + +K KPV+ + +AAS GY IS +++ I A T+L GSIG+ + Sbjct: 382 EQIRQELLALKAAGKPVVVSMGSLAASGGYWISASADYIFATPTTLTGSIGIFGMITTFE 441 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L +GV V +S + ++P+ ++Q ++ Y F+ LV++ R + + Sbjct: 442 DSLASIGVHTDGVSTSEWAGLSVTRT-LSPQVEAIIQRHIERGYLDFISLVAKERKMTIE 500 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFC 261 + ++ GR+W+G +A ++GL+D +G +E L ++ + F Sbjct: 501 QVDKIAQGRVWSGKKALELGLVDELGDLDEAIAKAAKLADMTLFDTRVIEQELTPEQRFM 560 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289 S+SS L ++ + + ++ + A Sbjct: 561 QQMFASVSSYLPASLS--QSSMLEQMLA 586 Score = 85.4 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 34/273 (12%), Positives = 89/273 (32%), Gaps = 36/273 (13%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51 +K+ + ++ ++ S ++ + + G I D + Sbjct: 23 RKLILNLIFFGILAAIIISIGSSEDIQVEDNSALVLNLAGSIVDQKQQVDPLEAAFKQGQ 82 Query: 52 -----------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRKPV 99 +++ I+ ++D + L++ ++I A+ + K Sbjct: 83 NANADGEILLADVLYVIDNAAQDQRISTLVLDLADLKHAGISKLQSIGDALNRFKESGKK 142 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 + + Y ++ ++ I V G+ Y K LDKL + + Sbjct: 143 VVAIGNYYEQNQYFLASFADTIYLNPQGGVSLDGLSMYNQYFKSALDKLKIKAHIFRVGT 202 Query: 160 MKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSD 209 K+ P+ +++ A + ++ + + + V+ +RNI + L Sbjct: 203 FKSAVEPYMRDDMSDAAREASSALLADVWQSYTQTVAGNRNIEPNSLVPDATTYLAELDK 262 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + A A + +D + E+ Q++ Sbjct: 263 ANGDSAAMAINMKWVDSLATTEDFRQTMLETVG 295 >gi|193068967|ref|ZP_03049926.1| protease 4 [Escherichia coli E110019] gi|192957762|gb|EDV88206.1| protease 4 [Escherichia coli E110019] Length = 622 Score = 135 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 501 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 560 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589 Score = 99.7 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 23 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 83 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 143 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 262 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 310 >gi|184159172|ref|YP_001847511.1| periplasmic serine protease [Acinetobacter baumannii ACICU] gi|332851109|ref|ZP_08433218.1| signal peptide peptidase SppA [Acinetobacter baumannii 6013150] gi|332869618|ref|ZP_08438829.1| signal peptide peptidase SppA [Acinetobacter baumannii 6013113] gi|332875999|ref|ZP_08443785.1| signal peptide peptidase SppA [Acinetobacter baumannii 6014059] gi|183210766|gb|ACC58164.1| Periplasmic serine protease (ClpP class) [Acinetobacter baumannii ACICU] gi|322509086|gb|ADX04540.1| Putative protease [Acinetobacter baumannii 1656-2] gi|332730273|gb|EGJ61598.1| signal peptide peptidase SppA [Acinetobacter baumannii 6013150] gi|332732665|gb|EGJ63897.1| signal peptide peptidase SppA [Acinetobacter baumannii 6013113] gi|332735865|gb|EGJ66906.1| signal peptide peptidase SppA [Acinetobacter baumannii 6014059] Length = 365 Score = 135 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 67/297 (22%), Positives = 132/297 (44%), Gaps = 18/297 (6%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQI-------EDSQELI 54 K + Y++ +V + + S +S H+A + I G I +S++ Sbjct: 72 FFKTLTFIYLLFIIVLMGKGCSTTKDGSTASSSSAHLAVVDIIGTIDASSNQAVNSEDTN 131 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAG 111 + ++R ++ A+ ++++SPGGS + I++ I+ + K V + +M AS Sbjct: 132 KALKRAFEASNSKAIALNINSPGGSPVQSDEIWQEIRYLKKEHPDKKVYAVIGDMGASGA 191 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I+ +SLVGSIGV+ + KLG+ +++ + K S +N Sbjct: 192 YYIASAADEIIVNPSSLVGSIGVIMPNYGITGLAQKLGIEDRTLTAGTNKDILSMTKPIN 251 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQ 230 P Q +Q V+D+ + F+ V E R + G WTG +A ++G+ D G Sbjct: 252 PVQRQHIQSVLDNVHTHFINAVKEGRGKRLKTNDPAIFSGLFWTGEQAIQLGVADRSGNI 311 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYW--FCDLKNLSISSLLEDTIPLMKQTKVQ 285 + + L +D + + NP ++ +S + + + + K+Q Sbjct: 312 TSLMRELK---LDNKVDYTIERNPLQSILGRMGSEMGKGLSESVAERLQTSQDAKLQ 365 >gi|256018039|ref|ZP_05431904.1| protease 4 [Shigella sp. D9] gi|332279079|ref|ZP_08391492.1| protease IV (signal peptide peptidase) [Shigella sp. D9] gi|332101431|gb|EGJ04777.1| protease IV (signal peptide peptidase) [Shigella sp. D9] Length = 618 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KP + + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPAVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 99.7 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVNLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|253565829|ref|ZP_04843283.1| protease IV [Bacteroides sp. 3_2_5] gi|251944933|gb|EES85371.1| protease IV [Bacteroides sp. 3_2_5] gi|301164217|emb|CBW23775.1| putative protease IV [Bacteroides fragilis 638R] Length = 592 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 79/280 (28%), Positives = 139/280 (49%), Gaps = 19/280 (6%) Query: 2 EFVLKKIKTRYVM-----LSLVTLTVVYFSWSSHVEDNSPHV-ARIAIRGQIED------ 49 V +KT + L ++ L + + +D S ++ A G+I D Sbjct: 267 NDVRDYLKTLVKIDEDDRLPILGLEEMVNIKKNVPKDKSGNILAVYYASGEITDYAGSAA 326 Query: 50 ------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 ++I + ++ DD A+++ ++SPGGSA+A E I+ A++++K +KPVI + Sbjct: 327 SDEGIIGSKMIRDLRKLKEDDDVKAVVLRVNSPGGSAFASEQIWHAVKELKAKKPVIVSM 386 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 + AAS GY ISCA++ I+A T+L GSIG+ P VK +K+G++ VK++ Sbjct: 387 GDYAASGGYYISCAADSIIAEPTTLTGSIGIFGMIPNVKGLTEKIGLTYDVVKTNQFSDF 446 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 + VN ++Q ++ Y FV +E R++ DK +++GR+WTG AKK+GL Sbjct: 447 GNLMRPVNSDERALLQMMIGQGYDLFVSRCAEGRHMSKDKIEKIAEGRVWTGEMAKKIGL 506 Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 +D +GG + + + I + K+ Sbjct: 507 VDELGGIGKALEIAAQKADLKG-YTIISYPAKKDILSTLF 545 Score = 93.9 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 98/264 (37%), Gaps = 26/264 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49 ++ +VTL + S + V + ++G + Sbjct: 22 LFIIGVVTLVGIISSSDTETVVKKNSVMMLDLKGTLVERTQESLEGLLGKFTGETADTYG 81 Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 +++ I++ +D+ + + S S + +AI +A+ K I + Sbjct: 82 LDDILASIKKAKENDNIKGIYIQASWLNASYASLQAIRKALDDFKESGKFIVAYSDNYTQ 141 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y +S ++ ++ ++ G+ + K L KLG+ ++ K K+ PF Sbjct: 142 GLYYLSSVADKVMLNPKGMIEWRGLASAPIFYKDLLQKLGIEMQVFKVGTYKSAVEPFTA 201 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225 +E++P + + + S ++ + VS SR I D + +D + E+ K L D Sbjct: 202 TEMSPANREQVTAFIGSIWNQILDGVSASRKIGKDSLNMYADRMLMFYPSDESVKCRLAD 261 Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249 + Q +V L L ++ Sbjct: 262 TLIYQNDVRDYLKTLVKIDEDDRL 285 >gi|320181201|gb|EFW56120.1| Protease IV [Shigella boydii ATCC 9905] Length = 618 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 98.9 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKADRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|291282945|ref|YP_003499763.1| Protease 4 [Escherichia coli O55:H7 str. CB9615] gi|209768384|gb|ACI82504.1| protease IV [Escherichia coli] gi|290762818|gb|ADD56779.1| Protease 4 [Escherichia coli O55:H7 str. CB9615] gi|320658432|gb|EFX26126.1| protease 4 [Escherichia coli O55:H7 str. USDA 5905] Length = 618 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ + + Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIKNGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 99.7 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|187733275|ref|YP_001880563.1| protease 4 [Shigella boydii CDC 3083-94] gi|194428542|ref|ZP_03061081.1| protease 4 [Escherichia coli B171] gi|194433484|ref|ZP_03065762.1| protease 4 [Shigella dysenteriae 1012] gi|260844115|ref|YP_003221893.1| protease IV [Escherichia coli O103:H2 str. 12009] gi|260855631|ref|YP_003229522.1| protease IV [Escherichia coli O26:H11 str. 11368] gi|260868291|ref|YP_003234693.1| protease IV [Escherichia coli O111:H- str. 11128] gi|307310662|ref|ZP_07590308.1| signal peptide peptidase SppA, 67K type [Escherichia coli W] gi|187430267|gb|ACD09541.1| protease 4 [Shigella boydii CDC 3083-94] gi|194413420|gb|EDX29703.1| protease 4 [Escherichia coli B171] gi|194418247|gb|EDX34338.1| protease 4 [Shigella dysenteriae 1012] gi|209768378|gb|ACI82501.1| protease IV [Escherichia coli] gi|257754280|dbj|BAI25782.1| protease IV [Escherichia coli O26:H11 str. 11368] gi|257759262|dbj|BAI30759.1| protease IV [Escherichia coli O103:H2 str. 12009] gi|257764647|dbj|BAI36142.1| protease IV [Escherichia coli O111:H- str. 11128] gi|306908840|gb|EFN39336.1| signal peptide peptidase SppA, 67K type [Escherichia coli W] gi|315061069|gb|ADT75396.1| protease IV (signal peptide peptidase) [Escherichia coli W] gi|320176722|gb|EFW51758.1| Protease IV [Shigella dysenteriae CDC 74-1112] gi|320641615|gb|EFX11003.1| protease 4 [Escherichia coli O157:H7 str. G5101] gi|320646975|gb|EFX15808.1| protease 4 [Escherichia coli O157:H- str. 493-89] gi|320652257|gb|EFX20555.1| protease 4 [Escherichia coli O157:H- str. H 2687] gi|320657858|gb|EFX25620.1| protease 4 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320668330|gb|EFX35157.1| protease 4 [Escherichia coli O157:H7 str. LSU-61] gi|323152988|gb|EFZ39257.1| signal peptide peptidase SppA, 67K type [Escherichia coli EPECa14] gi|323158527|gb|EFZ44542.1| signal peptide peptidase SppA, 67K type [Escherichia coli E128010] gi|323166270|gb|EFZ52045.1| signal peptide peptidase SppA, 67K type [Shigella sonnei 53G] gi|323175160|gb|EFZ60774.1| signal peptide peptidase SppA, 67K type [Escherichia coli LT-68] gi|323180545|gb|EFZ66090.1| signal peptide peptidase SppA, 67K type [Escherichia coli 1180] gi|323948173|gb|EGB44162.1| signal peptide peptidase SppA [Escherichia coli H120] gi|324119252|gb|EGC13140.1| signal peptide peptidase SppA [Escherichia coli E1167] gi|332085809|gb|EGI90973.1| signal peptide peptidase SppA, 67K type [Shigella dysenteriae 155-74] Length = 618 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 99.7 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|333006817|gb|EGK26314.1| signal peptide peptidase SppA, 67K type [Shigella flexneri K-272] Length = 614 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 315 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 374 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + K V+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 375 VTASEVIRAELAAARAAGKSVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 434 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 435 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 493 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 494 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 552 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 553 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 581 Score = 100 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 15 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 74 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 75 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 134 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 135 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLNV 194 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 195 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 254 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 255 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 302 >gi|320184010|gb|EFW58833.1| Protease IV [Shigella flexneri CDC 796-83] gi|332096360|gb|EGJ01361.1| signal peptide peptidase SppA, 67K type [Shigella boydii 3594-74] Length = 618 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 99.3 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDHNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPSA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|300904625|ref|ZP_07122461.1| signal peptide peptidase SppA [Escherichia coli MS 84-1] gi|301303940|ref|ZP_07210058.1| signal peptide peptidase SppA [Escherichia coli MS 124-1] gi|300403456|gb|EFJ86994.1| signal peptide peptidase SppA [Escherichia coli MS 84-1] gi|300840737|gb|EFK68497.1| signal peptide peptidase SppA [Escherichia coli MS 124-1] gi|315257426|gb|EFU37394.1| signal peptide peptidase SppA [Escherichia coli MS 85-1] Length = 666 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 367 KTPADTGDSIGVVFANGAIMDGEEAQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 426 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 427 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 486 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 487 TTVENSLDSIGVHTDGVSTSPLADV-SITKALPPEAQQMMQLSIENGYKRFITLVADARH 545 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 546 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 604 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 605 FDKVMDNMSGS--VRAMLPDTFQAMLPAPLA 633 Score = 99.3 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 101/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S S E + I G I D Sbjct: 67 LNFVREMVLNLFFIFLVLVGVGIWMQVSSSDTKETAGRGALLLDISGVIVDKPDSSQRFS 126 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L G + I +A+ Sbjct: 127 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKDFAGGDQPSMQYIGKAL 186 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 187 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 246 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 247 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 306 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 307 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 354 >gi|188493917|ref|ZP_03001187.1| signal peptide peptidase SppA, 67K type [Escherichia coli 53638] gi|188489116|gb|EDU64219.1| signal peptide peptidase SppA, 67K type [Escherichia coli 53638] Length = 618 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDNGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP ++ Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|332343487|gb|AEE56821.1| signal peptide peptidase SppA [Escherichia coli UMNK88] Length = 618 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLFPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP ++ Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 PGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|331683273|ref|ZP_08383874.1| signal peptide peptidase SppA, 67K type [Escherichia coli H299] gi|331079488|gb|EGI50685.1| signal peptide peptidase SppA, 67K type [Escherichia coli H299] Length = 618 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLAD-ISITKALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 98.9 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 306 >gi|145637565|ref|ZP_01793222.1| protease IV [Haemophilus influenzae PittHH] gi|145269251|gb|EDK09197.1| protease IV [Haemophilus influenzae PittHH] Length = 615 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 70/256 (27%), Positives = 126/256 (49%), Gaps = 14/256 (5%) Query: 36 PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 +A + + G I D + + + + D+S A+I+ ++SPGGSA+A E I Sbjct: 322 NKIAVVNVEGTIIDGESDEENSGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEII 381 Query: 87 FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + + ++ KPVI + MAAS GY IS ++ I+A ++ GSIG+ +P + + Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFAMFPTFENSI 441 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV V ++ + S FS + + Q ++ Y F+ +VS+ R + + Sbjct: 442 KKIGVHADGVSTTELANT-SAFSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVD 500 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L+ G++W G++A + GL+D +G E L + ++D++ WF D Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 557 Query: 266 LSISSLLEDTIPLMKQ 281 IS+LL DT ++ Sbjct: 558 SLISTLLRDTKKGAQE 573 Score = 88.9 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 55/288 (19%), Positives = 109/288 (37%), Gaps = 44/288 (15%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52 ++ + V L V L V S+SS + + + + G + D+++ Sbjct: 14 FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTTLTGDGALLLNLDGYLADNRDETLRWQD 73 Query: 53 ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93 ++ I++ D L++ L+ G A + I AI Sbjct: 74 ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHF 133 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K+ + + + Y ++ ++ I V G+ + Y K LDKL V+ Sbjct: 134 KDAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF ++++ +A MQ + ++ +V VSE+RNI D L + + Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDNI--LPNAK 251 Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 + A++ GL+ V + ++ + L AL S K+ Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKKLAALFGKGSDGKV 299 >gi|296122406|ref|YP_003630184.1| signal peptide peptidase SppA, 36K type [Planctomyces limnophilus DSM 3776] gi|296014746|gb|ADG67985.1| signal peptide peptidase SppA, 36K type [Planctomyces limnophilus DSM 3776] Length = 338 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 60/275 (21%), Positives = 129/275 (46%), Gaps = 10/275 (3%) Query: 27 WSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 + S + +A + + G I ++ +I +IE + D+ +++++ SPGG Sbjct: 58 FLSGNSSTTQRIAVLRVSGTIMPPLTERIIRQIEVAAEDERVKGVLLTIDSPGGFVADSH 117 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCA---SNIIVAAETSLVGSIGVLFQYPYV 141 I+ A++K++ +KP+ ++ +AAS GY I+ I A T+ GSIGV+ + Sbjct: 118 QIYHALEKLRAKKPISIQMKRLAASGGYYIAMGAGTKGQIFAEPTTWTGSIGVIIPRYDM 177 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI-P 200 ++K+GVS +K+ K SPF + ++ +++++ S+ F+ L+ +R+ Sbjct: 178 SELVEKIGVSSDPLKTGEFKDALSPFHPLTEAERKVWEEILNQSFEQFIELIDTNRDTLD 237 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ L+ G+I+T +A+ G+ID +G +E+ +L +R ++ + P+ Sbjct: 238 REQARKLATGQIYTARDARANGMIDEIGFEEDALAALQKSLKLDQVRVVEYRSQPQ--LV 295 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAV--WNP 293 L ++ + + W P Sbjct: 296 DLLLGSRTENVTAAQWQALVDATTPRAMFLFSWLP 330 >gi|218554334|ref|YP_002387247.1| protease 4 [Escherichia coli IAI1] gi|218361102|emb|CAQ98685.1| protease IV (signal peptide peptidase) [Escherichia coli IAI1] Length = 618 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 100 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 103/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGSDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|157161228|ref|YP_001458546.1| protease 4 [Escherichia coli HS] gi|170019887|ref|YP_001724841.1| protease 4 [Escherichia coli ATCC 8739] gi|312969795|ref|ZP_07783978.1| signal peptide peptidase SppA, 67K type [Escherichia coli 1827-70] gi|157066908|gb|ABV06163.1| protease 4 [Escherichia coli HS] gi|169754815|gb|ACA77514.1| signal peptide peptidase SppA, 67K type [Escherichia coli ATCC 8739] gi|310338080|gb|EFQ03169.1| signal peptide peptidase SppA, 67K type [Escherichia coli 1827-70] Length = 618 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP ++ Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|281178836|dbj|BAI55166.1| protease IV [Escherichia coli SE15] Length = 618 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+ QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEVQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 98.9 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 306 >gi|209919128|ref|YP_002293212.1| protease 4 [Escherichia coli SE11] gi|218695325|ref|YP_002402992.1| protease 4 [Escherichia coli 55989] gi|209912387|dbj|BAG77461.1| protease IV [Escherichia coli SE11] gi|218352057|emb|CAU97794.1| protease IV (signal peptide peptidase) [Escherichia coli 55989] Length = 618 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 98.1 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 S + K+ PF +++P A + + + ++ V+ +R IP + + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRLIPAQQVFPGA 258 Query: 209 DGRIW--------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 G + T A + L+D + E+ ++L K Sbjct: 259 QGLLVGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|193065780|ref|ZP_03046843.1| protease 4 [Escherichia coli E22] gi|192926552|gb|EDV81183.1| protease 4 [Escherichia coli E22] gi|320197951|gb|EFW72559.1| Protease IV [Escherichia coli EC4100B] Length = 622 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 501 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 560 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589 Score = 99.7 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 23 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 83 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 143 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 262 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 310 >gi|170683467|ref|YP_001743483.1| protease 4 [Escherichia coli SMS-3-5] gi|170521185|gb|ACB19363.1| protease 4 [Escherichia coli SMS-3-5] Length = 622 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 501 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 560 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589 Score = 99.7 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 23 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 83 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 143 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 262 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 310 >gi|330911571|gb|EGH40081.1| protease 4 [Escherichia coli AA86] Length = 622 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+ QMMQ +++ Y F+ LV+++R+ Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEVQQMMQLSIENGYKRFITLVADARH 501 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 560 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589 Score = 98.9 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 23 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 83 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 143 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 262 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 310 >gi|222033518|emb|CAP76259.1| Protease 4 [Escherichia coli LF82] gi|312946365|gb|ADR27192.1| protease 4 [Escherichia coli O83:H1 str. NRG 857C] Length = 618 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--IRAMLPDAFQAMLPAPLA 585 Score = 98.9 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 306 >gi|283833434|ref|ZP_06353175.1| signal peptide peptidase SppA [Citrobacter youngae ATCC 29220] gi|291071088|gb|EFE09197.1| signal peptide peptidase SppA [Citrobacter youngae ATCC 29220] Length = 618 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 75/271 (27%), Positives = 121/271 (44%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + I G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGESIGVIFANGAIMDGEETPGNVGGDTTAAQIREARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + K KPV+ + MAAS GY IS ++ IVA ++L GSIG+ Sbjct: 379 VSASEVIRAELAAAKAAGKPVVVSMGGMAASGGYWISTPASYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+ QMMQ +++ Y F+ LV+++R Sbjct: 439 NTVENSLDSIGVHTDGVATSPLAD-ISITKALPPEVQQMMQLSIENGYKRFITLVADARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L I+ + Sbjct: 498 TTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHIEYY--QDEP 554 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 F D+ S+S + +P Q + A Sbjct: 555 TFMDMVIDSMSGSVRAMLPEAIQAMLPPPLA 585 Score = 99.3 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S S+ E + I G I D Sbjct: 19 LNFVREFVLNLFFIFLVLVGVGIWMQVSSSNTSEHAERGALLLDISGVIVDKPSSTSRLS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G+ + I +A+ Sbjct: 79 VIGRQLFGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGADQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V + + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPVFAVGDNFSQGQYYLASFANKIYLSPQGSVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLDTVAANRQIPAQQVFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + DG T A L+D + EV + L K Sbjct: 259 QAMLDGLTKVDGDTAKYALDNKLVDALASSAEVEKILTKQFGWSKADK 306 >gi|323526878|ref|YP_004229031.1| peptidase S49 [Burkholderia sp. CCGE1001] gi|323383880|gb|ADX55971.1| peptidase S49 [Burkholderia sp. CCGE1001] Length = 321 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 14/268 (5%) Query: 26 SWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSA 80 + + H A IA+ G+I +++++ +E D +I+ +SPGGS Sbjct: 58 FSGDKIAASGRHTALIALDGEISADTRANAEDISAALESAFEDAGTAGVILRCNSPGGSP 117 Query: 81 YAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 I+ +++++ + P I V +M AS GY + A + I + S+VGSIGVL Sbjct: 118 VQAGIIYEEMRRLRAKHPSIPLYVVVGDMCASGGYYAAAAGDKIYVDKASIVGSIGVLMD 177 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 +DKLG+ + S K PFS PK Q Q+++D + F+ V + R Sbjct: 178 SFGFTGLMDKLGIQRRLHTSGENKGFYDPFSPETPKMDQHAQEMLDQIHGQFIDAVRQGR 237 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 +T + G WTG ++ ++GL D G V + + I D+ ++ Sbjct: 238 GKRLHETADMFSGLFWTGQKSVELGLADGFGDANYVAREIIK------APDIVDYTVKES 291 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 + + L ++ Sbjct: 292 ITDRVARKFGAAVGGGAVRALAFGARLN 319 >gi|323186216|gb|EFZ71568.1| signal peptide peptidase SppA, 67K type [Escherichia coli 1357] Length = 618 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGKVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP ++ Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|331668455|ref|ZP_08369303.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA271] gi|331063649|gb|EGI35560.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA271] Length = 622 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 501 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 560 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589 Score = 98.1 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 23 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 83 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 143 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 S + K+ PF +++P A + + + ++ V+ +R IP + + Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRLIPAQQVFPGA 262 Query: 209 DGRIW--------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 G + T A + L+D + E+ ++L K Sbjct: 263 QGLLVGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 310 >gi|327252883|gb|EGE64537.1| signal peptide peptidase SppA, 67K type [Escherichia coli STEC_7v] Length = 618 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVV 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITKALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 99.7 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + + E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAIGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|193078090|gb|ABO13025.2| putative protease; putative signal peptide peptidase sppA [Acinetobacter baumannii ATCC 17978] Length = 365 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 65/295 (22%), Positives = 127/295 (43%), Gaps = 14/295 (4%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQI-------EDSQELI 54 K + Y++ +V + + S +S H+A + I G I +S++ Sbjct: 72 FFKTLTFIYLLFIIVLMGKGCSTTKDGSTASSSSAHLAVVDIIGTIDASSNQAVNSEDTN 131 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAG 111 + ++R ++ A+ ++++SPGGS + I++ I+ + K V + +M AS Sbjct: 132 KALKRAFEASNSKAIALNINSPGGSPVQSDEIWQEIRYLKKEHPDKKVYAVIGDMGASGA 191 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I+ +SLVGSIGV+ + KLG+ +++ + K S +N Sbjct: 192 YYIASAADEIIVNPSSLVGSIGVIMPNYGITGLAQKLGIEDRTLTAGTNKDILSMTKPIN 251 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 P Q +Q V+D+ + F+ V E R + G WTG +A ++G+ D G Sbjct: 252 PVQRQHIQSVLDNVHTHFINAVKEGRGKRLKSNDPAIFSGLFWTGEQAIQLGVADRSGNI 311 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 + + L L ++ +S + + + + K+Q Sbjct: 312 TSLMREL-KLDNKVDYTIERNPLQSILGRMGSEMGKGLSESVAERLQTSQDAKLQ 365 >gi|16273441|ref|NP_439690.1| protease IV [Haemophilus influenzae Rd KW20] gi|260580322|ref|ZP_05848151.1| signal peptide peptidase SppA, 67K type [Haemophilus influenzae RdAW] gi|1174428|sp|P45243|SPPA_HAEIN RecName: Full=Protease 4; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase gi|1574383|gb|AAC23191.1| protease IV (sppA) [Haemophilus influenzae Rd KW20] gi|260092999|gb|EEW76933.1| signal peptide peptidase SppA, 67K type [Haemophilus influenzae RdAW] Length = 615 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 69/256 (26%), Positives = 126/256 (49%), Gaps = 14/256 (5%) Query: 36 PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 +A + + G I D + + + + D+S A+I+ ++SPGGSA+A E I Sbjct: 322 NKIAVVNVEGTIIDGESDEENAGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEII 381 Query: 87 FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + + ++ KPVI + MAAS GY IS ++ I+A ++ GSIG+ +P + + Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADSNTITGSIGIFTMFPTFENSI 441 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV V ++ + + FS + + Q ++ Y F+ +VS+ R + + Sbjct: 442 KKIGVHADGVSTTELANTSA-FSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVD 500 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L+ G++W G++A + GL+D +G E L + ++D++ WF D Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 557 Query: 266 LSISSLLEDTIPLMKQ 281 IS+LL DT ++ Sbjct: 558 SLISTLLSDTKKGAQE 573 Score = 84.7 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 56/287 (19%), Positives = 110/287 (38%), Gaps = 44/287 (15%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52 ++ + V L V L V S+SS + + S + + G + D+++ Sbjct: 14 FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTALTSEGALLLNLDGYLADNRDETLRWQD 73 Query: 53 ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93 ++ I++ D L++ L+ G A + I AI Sbjct: 74 ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHF 133 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K+ + + + Y ++ ++ I V G+ + Y K LDKL V+ Sbjct: 134 KDAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF ++++ +A MQ + ++ +V VSE+RNI D+ L + + Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDRI--LPNAK 251 Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + A++ GL+ V + ++ + L AL S K Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKKLSALFGKGSDGK 298 >gi|325269104|ref|ZP_08135724.1| signal peptide peptidase SppA [Prevotella multiformis DSM 16608] gi|324988491|gb|EGC20454.1| signal peptide peptidase SppA [Prevotella multiformis DSM 16608] Length = 592 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 67/276 (24%), Positives = 123/276 (44%), Gaps = 16/276 (5%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------------SQELIERIERISRD 63 VT+ + + ++D +A G I D +Q++ + +E ++ D Sbjct: 286 VTVADLQNAEDETLDDGDSQIAVYYAYGDIVDGAVGGMFAQNHKIDAQKVCKDLEELAED 345 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 A+++ ++S GGSAYA E I+ I ++K +KPV+ + MAAS Y +S ++ IVA Sbjct: 346 KEIKAVVLRVNSGGGSAYASEQIWHQIMELKKKKPVVVSMGGMAASGAYYMSAPADWIVA 405 Query: 124 AETSLVGSIGVLFQYPYVKP-FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 T+L GSIG+ +P F +KLGV VK++ + + + V Sbjct: 406 EPTTLTGSIGIFGMFPDASSLFAEKLGVRFDEVKTNKYAGFGTQARPFTEDEMAYLTQYV 465 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + Y F V+E R + + ++ G ++TG +A+K+GL+D +GG + L Sbjct: 466 NRGYRLFRHRVAEGRKMTDSQVEKIAQGHVYTGQDAQKIGLVDQLGGLDTAIAKAVRLAK 525 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278 + + L+ + L + + Sbjct: 526 LTGYSTCV-YPEEPGFLEQLLEQTKPDNYLSEQLRA 560 Score = 93.5 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 98/287 (34%), Gaps = 34/287 (11%) Query: 1 MEFVLKKIKTRYV----------MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-- 48 M+ K + +V +L+T+ + S + V + + GQ+ Sbjct: 1 MKQFFKFVFASFVGTLLFGIVAGFFALITIAGMIAMQDSTEKIEDNSVLVLNLSGQLAER 60 Query: 49 -----------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 L+E I + +++ + + + +YA +A+ A+ Sbjct: 61 GEDNFFGQLQGNATSSIGLDNLLEGIHKAKDNNNVKGIYIEAGAFAADSYASMQALRNAL 120 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 K I + Y ++ A++ + + G+ Q +VK L K+GV Sbjct: 121 LDFKKSGKWIVAYGDTYTQGTYYLASAADKVYLNPQGQIDWHGLSSQPVFVKDLLAKVGV 180 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 ++ VK K+ F ++ + ++S + + V SR + + + Sbjct: 181 KMQVVKVGAYKSATEMFTGDRMSAANREQTSAYLNSIWGNITKEVGASRRLSTAQLNAYA 240 Query: 209 DGRIWTG--AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 D I K+ L+D + +++ + +S I+ Sbjct: 241 DSMITFAAPETYVKLKLVDGLVYTDQMKGIVKKRLGLKSDDAIEQVT 287 >gi|331663248|ref|ZP_08364158.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA143] gi|331059047|gb|EGI31024.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA143] Length = 622 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLAD-ISITKALPPEAQQMMQLSIENGYKRFITLVADARH 501 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 560 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589 Score = 98.5 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 23 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 83 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + + E + Y ++ +N I + +V G Y K LDKL V Sbjct: 143 KEFRDSGKPVYAIGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 262 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKTLTKEFGWSKTDK 310 >gi|197334260|ref|YP_002156464.1| signal peptide peptidase SppA, 67K type [Vibrio fischeri MJ11] gi|197315750|gb|ACH65197.1| signal peptide peptidase SppA, 67K type [Vibrio fischeri MJ11] Length = 618 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 70/282 (24%), Positives = 130/282 (46%), Gaps = 13/282 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 ++ V ++ +A + G I D + + DD A Sbjct: 309 ISYYDYLSQVQPTVIPDAQDIAVVVASGAIMDGTERQGTVGGDSTAALLRQARGDDKVKA 368 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I I +K KPV+ + +AAS GY IS +++ I+A T+ Sbjct: 369 VVLRVDSPGGSAFASEVIRNEIDALKEAGKPVVVSMSSVAASGGYWISASADKIIAQPTT 428 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 + GSIG+ + L+K+G+ + +SP +N Q+MQ ++ YH Sbjct: 429 ITGSIGIFGILTTFEKGLEKMGIHSDGISTSPF-NGVGITRPLNDDVAQVMQLGIEHGYH 487 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F++LVS+ RN+ + ++ GR+WTG +A K GL+D +G ++ Q+ L + + Sbjct: 488 RFIKLVSDHRNLSLEAVDKVAQGRVWTGKDALKHGLVDQLGDFDDAVQAAAQLANMESYN 547 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + +K+ P + +L +S+ + + + Sbjct: 548 LYWVKEPLTPMEQFLEELSMNLNASVRTELFSFAPEALQPTI 589 Score = 95.4 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 95/293 (32%), Gaps = 39/293 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIEDSQ------ 51 + F + + + ++ + + + S+ + P + + G I + Sbjct: 19 LSFTRQLVLNLFFLIFIGVIAFAFLDSTPPSTEDKIVEPKALILDLSGPIVEESKFREPL 78 Query: 52 -------------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQ 91 ++I+ I + D++ + L++ S I +AI Sbjct: 79 ERITSDVLGSQKSQENVLFDIIDTIRFAAHDNNVSGLVLHLKEMNETSLTKLRYIAKAIN 138 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 K + + + + Y ++ ++ + A V G Y K L+KL VS Sbjct: 139 TFKAAGKPVYAIGDYYNQSQYYLASYADKVFMAPDGTVLLRGYGAYTLYYKELLEKLNVS 198 Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------ 203 + K+ P+ ++++ A + + + ++ V+ +R I Sbjct: 199 THVFRVGTYKSAVEPYLRNDMSDAAKESASVWLTQLWDAYLDDVATNRQIDPKTLTMPMD 258 Query: 204 --TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 L ++GL+D + ++EV + L K + Sbjct: 259 QFIAKLKSVNGDLSQMTVELGLVDKLATRQEVRKDLIEQFGSNGYDSFKQISY 311 >gi|333018733|gb|EGK38026.1| signal peptide peptidase SppA, 67K type [Shigella flexneri K-227] Length = 618 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + K V+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKSVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 99.7 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLNV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|145634892|ref|ZP_01790599.1| protease IV [Haemophilus influenzae PittAA] gi|145267758|gb|EDK07755.1| protease IV [Haemophilus influenzae PittAA] Length = 615 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 70/256 (27%), Positives = 127/256 (49%), Gaps = 14/256 (5%) Query: 36 PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 +A + + G I D + + + + D+S A+I+ ++SPGGSA+A E I Sbjct: 322 NKIAVVNVEGTIIDGESDEENAGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEII 381 Query: 87 FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + + ++ KPVI + MAAS GY IS ++ I+A ++ GSIG+ +P + + Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFAMFPTFENSI 441 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV+ V ++ + S FS + + Q ++ Y F+ +VS+ R + + Sbjct: 442 KKIGVNADGVSTTELAKT-SAFSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVD 500 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L+ G++W G++A + GL+D +G E L + ++D++ WF D Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 557 Query: 266 LSISSLLEDTIPLMKQ 281 IS+LL DT ++ Sbjct: 558 SLISTLLRDTKKGAQE 573 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 55/287 (19%), Positives = 108/287 (37%), Gaps = 44/287 (15%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52 ++ + V L V L V S+SS + + + + G + D+++ Sbjct: 14 FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTTLTGDGALLLNLDGYLADNRDETLRWQD 73 Query: 53 ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93 ++ I++ D L++ L+ G A + I AI Sbjct: 74 ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHF 133 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K+ + + + Y ++ ++ I V G+ + Y K LDKL V+ Sbjct: 134 KDAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF ++++ +A MQ + ++ +V VSE+RNI D L + + Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDNI--LPNAK 251 Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + A++ GL+ V + ++ + L AL S K Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKKLTALFGKGSDGK 298 >gi|225012275|ref|ZP_03702712.1| signal peptide peptidase SppA, 67K type [Flavobacteria bacterium MS024-2A] gi|225003830|gb|EEG41803.1| signal peptide peptidase SppA, 67K type [Flavobacteria bacterium MS024-2A] Length = 588 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 63/263 (23%), Positives = 128/263 (48%), Gaps = 10/263 (3%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATA 68 V++ V + S+ +A + RG I + +E ++ ++ D+ A Sbjct: 287 VSVVDVNNASSTFDSSLKDRIAIVFARGPIMYGEGTKNMIAQGVFVETLKELAEDEWIKA 346 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 +++ + SPGG+A + ++RAI+K+K +KPV+ + +AAS GY I+ ++ I A ++ Sbjct: 347 VVIRVESPGGNALTSDLLWRAIEKLKTKKPVLVSMGNVAASGGYYIAAGADQIFADPLTI 406 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIGV P + +K+G+ ++V++ S F + ++++Y+ Sbjct: 407 TGSIGVFASLPNIYGMTEKIGIHAETVETHQNALGYSFFQPLTESFKIRTIKSIENTYNT 466 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 F + V + R + + L+ GR+W+G +A VGL+D +GG ++ ++ + ++ Sbjct: 467 FKQRVIKGRGLTSETVEALAQGRVWSGKQALSVGLVDHLGGLQDAIEAAAEVANIENYNT 526 Query: 249 IKDWNPPKNYWFCDLKNLSISSL 271 I D+ + L S L Sbjct: 527 I-DYPKFEEDLESILSGAIPSPL 548 Score = 95.8 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 39/299 (13%), Positives = 105/299 (35%), Gaps = 27/299 (9%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------- 51 + V+L + + + + S V + + I D Sbjct: 20 LFFVIVLLFISGIASIMSAPSGGNSIKQNSVLALDLNLPIVDRAPSFDELQILLGLEDKV 79 Query: 52 ----ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 ++I I++ S + + + + +I A+ + K I ++ Sbjct: 80 LGLPDIISAIDKASENQNIKGIRLRADFISAGWAQTRSIRNALSRFKESGKFIYAYADVF 139 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 GY ++ S+ I ++ G+ + Y K F D+ GV ++ ++ K+ P+ Sbjct: 140 TQKGYYLASISDSIYLNPVGILEFKGLASEVLYYKDFQDEYGVKMEVIRHGKYKSAVEPY 199 Query: 168 --SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLI 224 +E++ ++ ++D + +++ RN+ + + RI + + LI Sbjct: 200 LENEMSSDNRYQIKTLLDDIWETIREEIAQERNLDPKILDKIINNQRITIPEDGVQEHLI 259 Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 D + +++ + + + + + + + + S L+D I ++ Sbjct: 260 DALVYEDDFDEKIKMQLEISTDEDLN----RVSVVDVNNASSTFDSSLKDRIAIVFARG 314 >gi|59712250|ref|YP_205026.1| protease IV (signal peptide peptidase) [Vibrio fischeri ES114] gi|59480351|gb|AAW86138.1| protease IV (signal peptide peptidase) [Vibrio fischeri ES114] Length = 618 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 71/282 (25%), Positives = 131/282 (46%), Gaps = 13/282 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 ++ V ++ +A + G I D + + DD A Sbjct: 309 ISYYDYLSQVQPTVIPDAQDIAVVVASGAIMDGTERQGTVGGDSTAALLRQARGDDKVKA 368 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I I +K KPV+ + +AAS GY IS +++ I+A T+ Sbjct: 369 VVLRVDSPGGSAFASEVIRNEIDALKEAGKPVVVSMSSVAASGGYWISASADKIIAQPTT 428 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 + GSIG+ + L+K+G+ + +SP S +N Q+MQ ++ YH Sbjct: 429 ITGSIGIFGILTTFEKSLEKMGIHSDGISTSPF-NGVSITRPLNDDVAQVMQLGIEHGYH 487 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F++LVS+ RN+ + ++ GR+WTG +A K GL+D +G ++ Q+ L + + Sbjct: 488 RFIKLVSDHRNLSLEAVDKVAQGRVWTGKDALKHGLVDQLGDFDDAVQAAAQLANMESYN 547 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + +K+ P + +L +S+ + + + Sbjct: 548 LYWVKEPLTPMEQFLEELSMNLNASVRTELFSFAPEALQPTI 589 Score = 95.4 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 38/293 (12%), Positives = 95/293 (32%), Gaps = 39/293 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIEDSQ------ 51 + F + + + ++ + + + S+ + P + + G I + Sbjct: 19 LSFTRQLVLNLFFLIFIGVIAFAFLDSTPPSTEDKIVEPKALILDLSGPIVEESKFREPL 78 Query: 52 -------------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQ 91 ++++ I + D++ + L++ S I +AI Sbjct: 79 ERITSDVLGSQKSQENVLFDIVDTIRFAAHDNNVSGLVLHLKEMNETSLTKLRYIAKAIN 138 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 K + + + + Y ++ ++ + A V G Y K L+KL VS Sbjct: 139 TFKAAGKPVYAIGDYYNQSQYYLASYADKVFMAPDGTVLLRGYGAYTLYYKELLEKLNVS 198 Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------ 203 + K+ P+ ++++ A + + + ++ V+ +R I Sbjct: 199 THVFRVGTYKSAVEPYLRNDMSDAAKESASAWLTQLWDAYLDDVATNRQIDPKTLTMPMD 258 Query: 204 --TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 L ++GL+D + ++EV + L K + Sbjct: 259 QFIAKLKSVNGDLSQMMVELGLVDKLATRQEVRKDLIEQFGSNGYDSFKQISY 311 >gi|323968532|gb|EGB63938.1| signal peptide peptidase SppA [Escherichia coli M863] Length = 637 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVV 442 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITKALPPEAQQMMQLSIENGYKRFITLVADARH 501 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 560 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589 Score = 99.7 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 23 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 83 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + + E + Y ++ +N I + +V G Y K LDKL V Sbjct: 143 KEFRDSGKPVYAIGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 262 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 310 >gi|229844213|ref|ZP_04464354.1| protease IV [Haemophilus influenzae 6P18H1] gi|229813207|gb|EEP48895.1| protease IV [Haemophilus influenzae 6P18H1] Length = 615 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 70/256 (27%), Positives = 126/256 (49%), Gaps = 14/256 (5%) Query: 36 PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 +A + + G I D + + + + D+S A+I+ ++SPGGSA+A E I Sbjct: 322 NKIAVVNVEGTIIDGESDEENAGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEII 381 Query: 87 FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + + ++ KPVI + MAAS GY IS ++ I+A ++ GSIG+ +P + + Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADSNTITGSIGIFTMFPTFENSI 441 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV V ++ + S FS + + Q ++ Y F+ +VS+ R + + Sbjct: 442 KKIGVHADGVSTTELANT-SAFSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVD 500 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L+ G++W G++A + GL+D +G E L + ++D++ WF D Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 557 Query: 266 LSISSLLEDTIPLMKQ 281 IS+LL DT ++ Sbjct: 558 SLISTLLRDTKKGAQE 573 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 55/287 (19%), Positives = 108/287 (37%), Gaps = 44/287 (15%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52 ++ + V L V L V S+SS + + S + + G + D+++ Sbjct: 14 FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTALTSEGALLLNLDGYLADNRDETLRWQD 73 Query: 53 ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93 ++ I++ D L++ L+ G + I AI Sbjct: 74 ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPTLDFIGGAISHF 133 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K+ + + + Y ++ ++ I V G+ + Y K LDKL V+ Sbjct: 134 KDAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF ++++ +A MQ + ++ +V VSE+RNI D L + + Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDNI--LPNAK 251 Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + A++ GL+ V + ++ + L AL S K Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKKLAALFGKGSDGK 298 >gi|30062971|ref|NP_837142.1| protease 4 [Shigella flexneri 2a str. 2457T] gi|56479902|ref|NP_707347.2| protease 4 [Shigella flexneri 2a str. 301] gi|110805427|ref|YP_688947.1| protease 4 [Shigella flexneri 5 str. 8401] gi|30041220|gb|AAP16949.1| protease IV, a signal peptide peptidase [Shigella flexneri 2a str. 2457T] gi|56383453|gb|AAN43054.2| protease IV, a signal peptide peptidase [Shigella flexneri 2a str. 301] gi|110614975|gb|ABF03642.1| protease IV, a signal peptide peptidase [Shigella flexneri 5 str. 8401] gi|281600872|gb|ADA73856.1| putative Periplasmic serine proteases (ClpP class) [Shigella flexneri 2002017] gi|313649199|gb|EFS13633.1| signal peptide peptidase SppA, 67K type [Shigella flexneri 2a str. 2457T] gi|332758842|gb|EGJ89157.1| signal peptide peptidase SppA, 67K type [Shigella flexneri 2747-71] gi|332759159|gb|EGJ89468.1| signal peptide peptidase SppA, 67K type [Shigella flexneri K-671] gi|332767154|gb|EGJ97349.1| signal peptide peptidase SppA, 67K type [Shigella flexneri 2930-71] gi|333003711|gb|EGK23247.1| signal peptide peptidase SppA, 67K type [Shigella flexneri VA-6] gi|333004305|gb|EGK23836.1| signal peptide peptidase SppA, 67K type [Shigella flexneri K-218] gi|333018322|gb|EGK37621.1| signal peptide peptidase SppA, 67K type [Shigella flexneri K-304] Length = 618 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + K V+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKSVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 99.7 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|309973214|gb|ADO96415.1| Protease IV [Haemophilus influenzae R2846] Length = 615 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 71/250 (28%), Positives = 126/250 (50%), Gaps = 14/250 (5%) Query: 36 PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 +A + + G I D + + + + D+S A+++ ++SPGGSA+A E I Sbjct: 322 NKIAVVNVEGAIIDGESDDENSGGDTIARILRKAHDDNSVKAVVLRVNSPGGSAFASEII 381 Query: 87 FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + + ++ KPVI + MAAS GY IS ++ I+A E ++ GSIG+ +P + + Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADENTITGSIGIFAMFPTFENSI 441 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GVS V ++ + S FS + + Q ++ Y F+ +VS+ R + + Sbjct: 442 KKIGVSSDGVSTTELANT-SAFSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKKQVD 500 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L+ G++W G++A + GL+D +G E L + ++D++ WF D Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 557 Query: 266 LSISSLLEDT 275 IS+LL DT Sbjct: 558 SLISTLLRDT 567 Score = 83.5 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 57/285 (20%), Positives = 109/285 (38%), Gaps = 40/285 (14%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52 ++ + V L V L V S+SS + + + + G + D+++ Sbjct: 14 FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTTLTGEGALLLNLDGYLADNRDETLRWQD 73 Query: 53 ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93 ++ I++ D L++ L+ G A + I AI + Sbjct: 74 ALSELNGERVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISQF 133 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 KN + + + Y ++ ++ I V G+ + Y K LDKL V+ Sbjct: 134 KNAGKPVIAYADNYSQGQYYLASFADEIYLNSIGKVDIHGLSQENLYFKEMLDKLAVTPH 193 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL------ 205 + K+ PF ++++ +A MQ + ++ +V VSE+R I D L Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRKIKKDNVLPNAKQY 253 Query: 206 --VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L + + A A++ GL+ V + ++ + L AL S K Sbjct: 254 LSDLKALKGNSTAYAQQRGLVTDVVTRLDLDKKLTALFGKGSDGK 298 >gi|300930753|ref|ZP_07146126.1| signal peptide peptidase SppA [Escherichia coli MS 187-1] gi|300461386|gb|EFK24879.1| signal peptide peptidase SppA [Escherichia coli MS 187-1] Length = 666 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 367 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 426 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 427 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 486 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A MMQ +++ Y F+ LV+++R+ Sbjct: 487 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQLMMQLNIENGYKRFITLVADARH 545 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 546 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 604 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 605 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 633 Score = 99.7 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 67 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 126 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 127 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 186 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 187 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 246 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 247 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 306 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 307 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 354 >gi|325123108|gb|ADY82631.1| putative protease [Acinetobacter calcoaceticus PHEA-2] Length = 338 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 64/293 (21%), Positives = 128/293 (43%), Gaps = 20/293 (6%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQI-------EDSQELI 54 K + Y++ +V + + S V +S H+A + I G I +S++ Sbjct: 45 FFKTLTFIYLLFIIVLMGKGCSTSKEGSAVSSSSAHLAVVDIIGTIDASSNQAVNSEDTN 104 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAG 111 + ++R ++ A+ ++++SPGGS + I++ I+ + K V + +M AS Sbjct: 105 KALKRAFEASNSKAVALNINSPGGSPVQSDEIWQEIRYLKKQHPDKKVYAVIGDMGASGA 164 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I+ +SLVGSIGV+ + KLG+ +++ + K S ++ Sbjct: 165 YYIASAADEIIVNPSSLVGSIGVIMPNYGITGLAQKLGIEDRTLTAGTNKDILSMTKPID 224 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 P Q +Q V+D+ + F+ V E R + G WTG +A ++G+ D G Sbjct: 225 PAQKQHIQSVLDNVHTHFITAVKEGRGKRLKSNDPAIFSGLFWTGEQAIQLGVADRSGNI 284 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 + + L + D+ +N L + + + ++ + Sbjct: 285 TSLMREL-------KLDNKVDYTIERNPLQSILGRMGAEMGKGLSESIAQRLE 330 >gi|82543829|ref|YP_407776.1| protease 4 [Shigella boydii Sb227] gi|81245240|gb|ABB65948.1| protease IV [Shigella boydii Sb227] Length = 618 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDHNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQWQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPSA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|224499759|ref|ZP_03668108.1| hypothetical protein LmonF1_08734 [Listeria monocytogenes Finland 1988] Length = 283 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 120/225 (53%), Gaps = 16/225 (7%) Query: 31 VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76 E + +A +++ G I+D+ + ++++E++ DD+ +++ ++SP Sbjct: 56 EEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLEQVRNDDNIQGVLLYVNSP 115 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG I I +++ + P + MAAS GY IS ++ I A++ +L GS+GV Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + Q + KLGVS ++KS K S + ++MQ ++D SY+ FV++V+ Sbjct: 176 IMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVA 235 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + R + ++ ++DGRI+ G +AK+ GLID G QE+ ++L Sbjct: 236 QGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALEALKK 280 >gi|194335792|ref|YP_002017586.1| signal peptide peptidase SppA, 36K type [Pelodictyon phaeoclathratiforme BU-1] gi|194308269|gb|ACF42969.1| signal peptide peptidase SppA, 36K type [Pelodictyon phaeoclathratiforme BU-1] Length = 597 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 67/271 (24%), Positives = 113/271 (41%), Gaps = 11/271 (4%) Query: 29 SHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGG 78 ++ +A I + G I D + L ++ D + AL+V + SPGG Sbjct: 293 PQKGESDERIAVITMSGMIVHSAGEMGEGIDIEMLKNSLDAALEDKAVKALVVRIDSPGG 352 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A A + + + +KP++ + +AAS GY+ + A I A ++ GSIGV Sbjct: 353 DALASADMLQMLDSAAVKKPLVVSMSGVAASGGYMAALAGKTIFAQPLTITGSIGVYALK 412 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P + +K+G+ V +PF + +A Y FV V+ SR Sbjct: 413 PNISGLAEKIGLGRDVVTRGQYADASTPFKPLEGQAYNKFVGASGEIYDDFVGKVAASRK 472 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI-KDWNPPKN 257 + ++ GR+WTG+ A K GL+D +GG + + L +K+ P + Sbjct: 473 MSIAAVDSVAGGRVWTGSRAMKAGLVDRMGGLFDAIHAAQQLAKMDMGKKLQIILYPEQK 532 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 WF L +SL + +KQ + L Sbjct: 533 SWFESLLQGRSASLSDRFAAAVKQQVLHELL 563 Score = 75.8 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 42/251 (16%), Positives = 95/251 (37%), Gaps = 21/251 (8%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQI------------------EDSQELIERIERI 60 ++++ S V + + G I QEL+ + Sbjct: 25 IFAGLFWAHRSSQALPDRFVLVVPLSGGIDEVRNESSSLPFLPSHESLSLQELLFVLNHA 84 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 D+ +++ + S + A++KV+ +T A A YL++ A N Sbjct: 85 VADERVREVLLDIRGIHTSPAKIAELRDAVEKVRKGGKKVTAFLRSAEDADYLLATACNS 144 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV--NPKAVQMM 178 I+A + G+ + + L KLGV +++ + K+ PF + + ++ + Sbjct: 145 IIAERGGFLLLDGLKVESLFYTSPLGKLGVQVQAAQWKKYKSGIEPFVRTGASKEYLEQI 204 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSL 237 ++D Y ++ VS+ R + L + + +A+ +GL+D + E+ + L Sbjct: 205 NALLDEFYDDYLGYVSKRRGMSRSSFEALINNDPLVSAKKAQTLGLVDGIASFWELQRQL 264 Query: 238 YALGVDQSIRK 248 + + + Sbjct: 265 TRKVSGKELAR 275 >gi|301170278|emb|CBW29884.1| protease IV (signal peptide peptidase) [Haemophilus influenzae 10810] Length = 615 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 70/256 (27%), Positives = 126/256 (49%), Gaps = 14/256 (5%) Query: 36 PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 +A + + G I D + + + + D+S A+I+ ++SPGGSA+A E I Sbjct: 322 NKIAVVNVEGTIIDGESDDENSGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEII 381 Query: 87 FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + + ++ KPVI + MAAS GY IS ++ I+A ++ GSIG+ +P + + Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFTMFPTFENSI 441 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV V ++ + S FS + + Q ++ Y F+ +VS+ R + + Sbjct: 442 KKIGVHADGVSTTELANT-SAFSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVD 500 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L+ G++W G++A + GL+D +G E L + ++D++ WF D Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 557 Query: 266 LSISSLLEDTIPLMKQ 281 IS+LL DT ++ Sbjct: 558 SLISTLLRDTKKGAQE 573 Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 55/287 (19%), Positives = 107/287 (37%), Gaps = 44/287 (15%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52 ++ + V L V L V S+SS + + + + G + D+++ Sbjct: 14 FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTTLTGDGALLLNLDGYLADNRDETLRWQD 73 Query: 53 ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93 ++ I++ D L++ L+ G A + I AI Sbjct: 74 ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFQGADLPALDFIGGAISHF 133 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K+ + + + Y ++ ++ I V G+ + Y K LDKL V+ Sbjct: 134 KDAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 K+ PF ++++ +A MQ + ++ +V VSE+RNI D L + + Sbjct: 194 IFHVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDNI--LPNAK 251 Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + A++ GL+ V + ++ + L AL S K Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKKLAALFGKGSDGK 298 >gi|145639083|ref|ZP_01794691.1| protease IV [Haemophilus influenzae PittII] gi|145272055|gb|EDK11964.1| protease IV [Haemophilus influenzae PittII] Length = 576 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 70/256 (27%), Positives = 126/256 (49%), Gaps = 14/256 (5%) Query: 36 PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 +A + + G I D + + + + D+S A+I+ ++SPGGSA+A E I Sbjct: 283 NKIAVVNVEGTIIDGESDEENAGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEII 342 Query: 87 FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + + ++ KPVI + MAAS GY IS ++ I+A ++ GSIG+ +P + + Sbjct: 343 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFTMFPTFENSI 402 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV V ++ + S FS + + Q ++ Y F+ +VS+ R + + Sbjct: 403 KKIGVHADGVSTTELAKT-SAFSPLAKPVQDIYQTEIEYGYDRFLEIVSKGRQLSKTQVD 461 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L+ G++W G++A + GL+D +G E L + ++D++ WF D Sbjct: 462 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 518 Query: 266 LSISSLLEDTIPLMKQ 281 IS+LL DT ++ Sbjct: 519 SLISTLLRDTKKGAQE 534 Score = 78.5 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 45/210 (21%), Positives = 87/210 (41%), Gaps = 15/210 (7%) Query: 52 ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 +++ I++ D L++ L+ G A + I AI K+ + + + Sbjct: 52 DVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHFKDAGKPVIVYADNYSQG 111 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168 Y ++ ++ I V G+ + Y K LDKL V+ + K+ PF + Sbjct: 112 QYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPHIFRVGTYKSAVEPFLRN 171 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA----------EA 218 +++ +A MQ + ++ +V VSE+RNI D L + + + A Sbjct: 172 DMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDNI--LPNAKQYLAELKALKGNSTAYA 229 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 ++ GL+ V + ++ + L AL S K Sbjct: 230 QQRGLVTDVVTRLDLDKKLAALFGKGSDGK 259 >gi|119774858|ref|YP_927598.1| signal peptide peptidase SppA, 67K type [Shewanella amazonensis SB2B] gi|119767358|gb|ABL99928.1| signal peptide peptidase SppA, 67K type [Shewanella amazonensis SB2B] Length = 617 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 75/267 (28%), Positives = 123/267 (46%), Gaps = 14/267 (5%) Query: 36 PHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 V I +G I + + I DDS AL++ + SPGGSA+A E I Sbjct: 328 DSVGVIVAKGTILNGFQAPGDIGGKSTSQLIRDARFDDSIKALVLRVDSPGGSAFASEEI 387 Query: 87 FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + + +K KPV+ + MAAS GY IS +++ I A T+L GSIG+ + L Sbjct: 388 RQELLALKAAGKPVVVSMGSMAASGGYWISASADYIYATPTTLTGSIGIFGLMTTFEDSL 447 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 +GV V +S A SPF ++PK +Q ++ Y F+ LV+ R++ ++ Sbjct: 448 AAIGVHADGVATSEWAA-HSPFRPLSPKLESAIQRNIERGYKEFITLVANERDMTLEQVD 506 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFCDLK 264 ++ GR+W+G +A ++GL+D +G + L + ++ + F Sbjct: 507 AIAQGRVWSGKKALELGLVDEIGDMPQALAKAAELAGMATFDIQLIEQQMSPEELFIQEM 566 Query: 265 NLSISSLLEDTIPLMKQTKVQGLWAVW 291 S+S+ L + VQ L VW Sbjct: 567 FASVSAWLPQQ--TQQSDVVQSLLRVW 591 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 43/285 (15%), Positives = 99/285 (34%), Gaps = 38/285 (13%) Query: 1 MEFVLKKIKTRY---VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS------- 50 + FV K I +++ ++ + +V S + S + + G + D Sbjct: 19 INFVRKLIINIVFFPILILVLIVGIVALSTEDELRIESGSALVLDLSGNLVDQARRVDPL 78 Query: 51 ------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 +++ IE + D+ A+++ L + A+ A+ Sbjct: 79 TQLMRQGNQNSEDTEVLLSDVLYVIENATHDERIGAIVLDLGNMRAGISKLTAVGEALNG 138 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 + + + + + + Y ++ ++ I V G Y K L+KL V+ Sbjct: 139 FRETGKKVVAIGDWYSRSQYFLASYADEIYLNPRGEVFIDGYAAYNLYFKSALEKLKVNT 198 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT------ 204 + K+ P+ +++P A + Q ++D + + V+++R I + Sbjct: 199 HVFRVGTYKSAVEPYIRDDMSPAAKEATQLLIDDLWGSYADTVAKNRGIETGELVLDADT 258 Query: 205 --LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 L + A A K G +D + E ++ L + Sbjct: 259 YLARLDANDGDSAALAVKQGWVDALMSDEAFRSAMVELVGEDKEE 303 >gi|283778612|ref|YP_003369367.1| signal peptide peptidase SppA, 36K type [Pirellula staleyi DSM 6068] gi|283437065|gb|ADB15507.1| signal peptide peptidase SppA, 36K type [Pirellula staleyi DSM 6068] Length = 352 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 61/278 (21%), Positives = 126/278 (45%), Gaps = 14/278 (5%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQELIE-RIERISRDDSATALIVSLSSPGGSAYAGEA 85 + S + +A I+I G I + ++ +I+R+++D++ A++V + SPGG+ + Sbjct: 60 FVSGDKFGDDKIAIISIEGVIAEGDGFVKRQIDRVAKDENVKAIVVRVDSPGGTVTGSDY 119 Query: 86 IFRAIQKVKNRKPVI---TEVHEMAASAGYLISCAS----NIIVAAETSLVGSIGVLFQY 138 I ++K++ K I + MAAS GY +S A N+I A T+ GSIGV+ + Sbjct: 120 ILHHLKKLRKEKSDIPLVVSMGSMAASGGYYVSMAVGDQENVIYAEPTTTTGSIGVIIPH 179 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR- 197 + + K + S+ S K + + + +++Q V+ S+ F ++ E R Sbjct: 180 YDISGLMAKFDIKDDSIASHERKQMLTMTKPIPQEHREIIQGYVNESFGRFKSIIKEGRP 239 Query: 198 --NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR-KIKDWNP 254 K L+ G I++ +A K GL+D +G E+ L + ++ ++ Sbjct: 240 GFKADESKLDQLATGEIFSADQALKHGLVDKIGFIEDAIDRALELAKLDKAKTRVVEFEK 299 Query: 255 PKNYWFCDLKNLSISS--LLEDTIPLMKQTKVQGLWAV 290 P + + +S ++ + L+ + + + Sbjct: 300 PASLFDVGAIAMSRAAEPAGRSELHLLMEMSTPRPYYL 337 >gi|255021332|ref|ZP_05293380.1| Protease IV [Acidithiobacillus caldus ATCC 51756] gi|254969195|gb|EET26709.1| Protease IV [Acidithiobacillus caldus ATCC 51756] Length = 611 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 72/288 (25%), Positives = 127/288 (44%), Gaps = 18/288 (6%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS----------QELIERIERISRDDSAT 67 V+L + +A + I G + + + +++ + +D + Sbjct: 299 VSLDAFLQNVPPSANHPQHQIAVVPIDGMLVPGDVEKAGVVATEPTVAQLDALRKDKAVK 358 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAET 126 A+++ +SSPGG EAI +AI +++ KPV+ + + AS Y +S ++ I A T Sbjct: 359 AVVLQVSSPGGDVTTAEAIRKAILRLRKAGKPVVVSMGSLGASGAYWLSTGADEIFAEPT 418 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 ++ IGV +P L KLG+++ V A PSP + + Q VVD Y Sbjct: 419 TITADIGVFMLFPDYSGTLHKLGITVSGVSMPAGGAHPSPMMPLTDSEQKAYQAVVDYLY 478 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 H FV LV+ +R++P+ + + GR W+G A +GL++ +GG +E L + Sbjct: 479 HHFVSLVATARHLPFAQAEKDAQGRAWSGIAAYHMGLVNQLGGLQEAIAEAAKLAKLEPH 538 Query: 247 RKIKDWN--PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + P K L NL++ L + + L A+W Sbjct: 539 HYDVRYLPIPEKISVQNLLGNLALGILPQGMLDLGLGGS-----ALWK 581 Score = 72.7 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 79/206 (38%), Gaps = 11/206 (5%) Query: 53 LIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 L+ I+ ++D L ++ GGS + + +A+Q + I + A Sbjct: 90 LVRAIDAAAKDPHIRLLELNLSDFGGGSITQLQTVAKALQTFRASGKPIYAFAPNYSQAS 149 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FSE 169 Y ++ +N I +V G + Y K F DK+GV + S + K+ P ++ Sbjct: 150 YFLAAQANQIFLPHLGVVLFTGFTTKGLYFKDFFDKIGVRVYSFRQGKYKSAMEPLIRND 209 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--------GAEAKKV 221 ++ A + ++ + +H + +++ R+IP + + A Sbjct: 210 MSAAAREENEEWLRVWWHSYAEGIAQGRHIPVTQVDRYATQLPELIQTSKGNAAQLALSE 269 Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIR 247 GLI +G +++ ++ Sbjct: 270 GLITRLGDKQDFEAAMAKALQQPEKD 295 >gi|154174848|ref|YP_001408779.1| signal peptide peptidase SppA, 36K type [Campylobacter curvus 525.92] gi|112802242|gb|EAT99586.1| signal peptide peptidase SppA, 36K type [Campylobacter curvus 525.92] Length = 287 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 69/278 (24%), Positives = 135/278 (48%), Gaps = 4/278 (1%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63 +LK I T + L + + ++ F+ S ++ P++A+I I+G + D+ E++ ++E + D Sbjct: 14 ILKFINTNFKALVFLLILILLFAPSGDIK--QPNLAQIDIKGALFDTDEILNKLEELRND 71 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 + +++ + SPGG+ I ++++K K V+ AS Y ++ I+A Sbjct: 72 QNIKGVLLYIDSPGGALSPSVEIATQVKRLKESKKVLAYAGGSMASGSYYAGVNADKILA 131 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 S +GSIGV+ Q P + K+GVS + VK+ +K + + + + +Q++VD Sbjct: 132 NPGSFIGSIGVIMQAPNIAELAHKIGVSEQVVKAGELKEAGTFTRQWSKEERASLQNLVD 191 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 +Y F + V+++RN+ DK ++ R++ +A K+GLID V G + L A+ Sbjct: 192 GAYELFTKDVAQARNLSLDKKDEWANARVFLADDALKMGLIDGVCGYFDAKSELEAMSGV 251 Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 + P + I+SL + Sbjct: 252 DE--PVWQEKPQIEKLMEKFTHQGINSLFNAFFSAQVR 287 >gi|238757018|ref|ZP_04618206.1| Protease 4 [Yersinia aldovae ATCC 35236] gi|238704848|gb|EEP97377.1| Protease 4 [Yersinia aldovae ATCC 35236] Length = 616 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 69/269 (25%), Positives = 125/269 (46%), Gaps = 14/269 (5%) Query: 31 VEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAY 81 V +A I G I D L +I + D A+++ ++SPGGS Sbjct: 319 VPQQGGQIAVIFANGAIIDGPQTPGNVGGDTLAAQIRQARLDPKIKAVVLRVNSPGGSVS 378 Query: 82 AGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 A E I + ++ KP++ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 379 ASELIRSELTALRAANKPLVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINT 438 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + L+ +GV V +SP+ S + P+ QMMQ +++ Y F+ LV+ SR+ Sbjct: 439 FQNTLESIGVHTDGVATSPLAD-ISITKNLPPEFAQMMQINIENGYKTFIDLVATSRHKT 497 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ ++ G +W G +AK GL+D +G ++ + + L ++ + + Sbjct: 498 PEQVDQIAQGHVWIGVDAKSNGLVDQLGDFDDAVKKVAELAQL-KTWQLNWFIDEPSLSD 556 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 L +++S ++ +P Q + + Sbjct: 557 MILGQMNVS--IQAILPSAIQAMLPAPIS 583 Score = 81.2 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 46/298 (15%), Positives = 105/298 (35%), Gaps = 44/298 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + FV + I +++L ++ +Y + S + + + G + D Sbjct: 19 LNFVREFILNLFLILLILVGVGIYLQFQSKPVEPVKGALLVNLTGVVVDQPAVNNKLRQL 78 Query: 52 ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92 ++++ I D++ T L++SLS G+ + + +A+++ Sbjct: 79 GRELLGSSSNRLQENSLFDIVDTIRLAKNDNNITGLVLSLSDFTGADQPSLQYMGKALRE 138 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 ++ I + + Y ++ +N I + V G Y K L+KL V+ Sbjct: 139 FRDSGKPIYAIGDSYNQTQYYLASFANKIYLSPQGAVDLHGFASNNLYYKSLLEKLQVTT 198 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203 + K+ P +++P A + + +H ++ V+ +R + ++ Sbjct: 199 NIFRVGTYKSAVEPMIRDDMSPAAREADSRWIGGLWHNYLTAVAANRQLTPEQLFPGAAG 258 Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNP 254 L A L+D + + +V L D + I D+ P Sbjct: 259 VISGLQAAGGSPAQYALTSKLVDQLASRPDVETELVKTFGWDKKSNDFNYVSIYDYQP 316 >gi|311031314|ref|ZP_07709404.1| signal peptide peptidase SppA, 36K type [Bacillus sp. m3-13] Length = 336 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 139/284 (48%), Gaps = 26/284 (9%) Query: 31 VEDNSPHVARIAIRGQIEDS---------------QELIERIERISRDDSATALIVSLSS 75 + + + + G I+D+ ++ + +++ DD+ +IV +++ Sbjct: 54 DGSPNRKILVLEVNGVIQDTGSDVTSVFQSPGYNHRQFLRMLDQAKEDDTVQGIIVRVNT 113 Query: 76 PGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 PGG I + + ++K KP+ + MAAS GY I+ +N I A+ ++ GSIG Sbjct: 114 PGGGVSESAEIHKRLVEIKEETEKPIYISMGTMAASGGYYIAAPANKIFASPETITGSIG 173 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V+ Q +K GV ++KS P K SP +++ + Q++Q +VD+ Y FV+++ Sbjct: 174 VIMQGINYSELAEKYGVKFDTIKSGPYKDIMSPTKDMSEEERQILQSMVDNMYDQFVKVI 233 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 + R + + ++DGRI+ G +AK + ++D +G E+V +++ +++ ++ Sbjct: 234 VDGRGMSESEVRRIADGRIYDGQQAKDINIVDELGYFEDVIEAMKKDHEMGNVQVVQY-- 291 Query: 254 PPKNYWFCDLKNLSISSLL------EDTIPLMKQTKVQGLWAVW 291 +N + L ++++ SLL + L+ Q L ++ Sbjct: 292 -TENLGWGSLFSMNVQSLLKPESEMQMLAKLINQPNSPRLMYLY 334 >gi|282164165|ref|YP_003356550.1| putative signal peptide peptidase [Methanocella paludicola SANAE] gi|282156479|dbj|BAI61567.1| putative signal peptide peptidase [Methanocella paludicola SANAE] Length = 293 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 72/274 (26%), Positives = 129/274 (47%), Gaps = 26/274 (9%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHV--------------EDNSPHVARIAIRGQIEDSQ-- 51 + +V++ L+ +TV++ +++ + VA I + GQ+ + Sbjct: 17 LAAVFVVIGLLAVTVLWSAYAGITHQQVIPGSIAKAFGGGKTQKVAVIYVEGQMVADKSE 76 Query: 52 ----------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 ++++ + + D A+++ ++SPGG+ A E I I + K KPV+ Sbjct: 77 DAAKGSAFSSDIVKCMRAATDDPEVKAIVLRVNSPGGTPVAAEEIISQINRTKAVKPVVI 136 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + +MA SA Y IS +N IVA + GSIGV++ + D+LGV++ KS K Sbjct: 137 SMGDMATSAAYYISSQANRIVANPDTFTGSIGVIWTFKNKSKAYDELGVTVYVAKSGNFK 196 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221 S + + + +++ SY FV V++ RN+ DK ++DGRI+TG AK + Sbjct: 197 DMGSEWRGLTENEKSYVNAIINESYDRFVTNVAKGRNMSVDKVKEIADGRIFTGTTAKGM 256 Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 GL+D +GG + + + I N P Sbjct: 257 GLVDDIGGLYDAVSIARNMSNTKGKVTIVYMNEP 290 >gi|229847143|ref|ZP_04467248.1| protease IV [Haemophilus influenzae 7P49H1] gi|229809972|gb|EEP45693.1| protease IV [Haemophilus influenzae 7P49H1] Length = 615 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 70/256 (27%), Positives = 126/256 (49%), Gaps = 14/256 (5%) Query: 36 PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 +A + + G I D + + + + D+S A+I+ ++SPGGSA+A E I Sbjct: 322 NKIAVVNVEGTIIDGESDEENAGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEII 381 Query: 87 FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + + ++ KPVI + MAAS GY IS ++ I+A ++ GSIG+ +P + + Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFTMFPTFENSI 441 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV V ++ + S FS + + Q ++ Y F+ +VS+ R + + Sbjct: 442 KKIGVHADGVSTTELANT-SAFSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVD 500 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L+ G++W G++A + GL+D +G E L + ++D++ WF D Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 557 Query: 266 LSISSLLEDTIPLMKQ 281 IS+LL DT ++ Sbjct: 558 SLISTLLRDTKKGAQE 573 Score = 83.9 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 54/287 (18%), Positives = 108/287 (37%), Gaps = 44/287 (15%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52 ++ + V L V L V S+SS + + + + G + D+++ Sbjct: 14 FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTTLTGDGALLLNLDGYLADNRDEILRWQD 73 Query: 53 ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93 ++ I++ D L++ L+ G A + I AI Sbjct: 74 ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHF 133 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K+ + + + Y ++ ++ I V G+ + Y K LDKL V+ Sbjct: 134 KDAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF ++++ +A MQ + ++ +V VSE+RNI D+ L + + Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDRI--LPNAK 251 Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + A++ GL+ V + ++ + AL S K Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKKFTALFGKGSDGK 298 >gi|237752037|ref|ZP_04582517.1| protease IV [Helicobacter winghamensis ATCC BAA-430] gi|229376604|gb|EEO26695.1| protease IV [Helicobacter winghamensis ATCC BAA-430] Length = 293 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 66/276 (23%), Positives = 126/276 (45%), Gaps = 4/276 (1%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 +EFV K +K +L +V + F +VARI + G I S ++ +E + Sbjct: 11 LEFVGKHLKALIFLLVVVLI----FMSKQEKVLEDANVARIDLYGAILQSDTFLQELESL 66 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 ++ +++ + SPGG+ I AI++V + PV+ AS YL ++ Sbjct: 67 EKNPHLKGILLVIDSPGGAIAPSVEISEAIKRVNFKIPVVAYAQGAMASGSYLAGVWADS 126 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 IVA +++GSIGV+ + K+G++ +++K+ K +P N + +M++D Sbjct: 127 IVANRGAMLGSIGVIINGMDLSELAKKVGIAPQTIKAGIYKEAGTPMRSWNKEEERMLKD 186 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +V Y FV V +R + + + GRI + A ++GL+D VG + L+ Sbjct: 187 LVQEQYWMFVEEVVNARKLDIAQEPNFAQGRILSAKNAFELGLVDKVGSIYDAQMLLFKK 246 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 + +K + + IS+ +++ I Sbjct: 247 ANILEPKWLKKEKDKIEVYLEKIFGEQISNGIQNGI 282 >gi|254508475|ref|ZP_05120594.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus 16] gi|219548587|gb|EED25593.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus 16] Length = 616 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 75/285 (26%), Positives = 132/285 (46%), Gaps = 13/285 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 ++ + + ++ +A + G I D + + + DD A Sbjct: 307 ISYYDYQPTMAPSFSTSANDIAVVVASGAIMDGSQPRGTVGGDTVAALLRQARNDDKVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I I+ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKEAGKPVVASMSSLAASGGYWISMSADRIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + L++LGV V +SP ++ + ++ A + Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGLNELGVYTDGVGTSPF-SDVGVTTGLSEGAAEAFQLGIEHGYK 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F +LVS++RNI + ++ GR+WTG +A K GL+D +G ++ L + Sbjct: 486 RFTQLVSDNRNISLTQLDNIAQGRVWTGQDAMKFGLVDSIGDFDDAVSLAAELAEVENYD 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 I +++ P + DL N S+ D + L V Sbjct: 546 IYWVEEPLSPAQQFIQDLMNQVKVSVGIDINSYLPPALQPVLKQV 590 Score = 89.3 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 49/319 (15%), Positives = 102/319 (31%), Gaps = 44/319 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVED-NSPHVARIAIRGQIEDSQ-------- 51 + FV + + + S+ + VYF S + + + G I + Sbjct: 19 ITFVRLALTNLFFLASIAIIYFVYFHAQSEAPTVPTESALILNLSGPIVEQPNYVNPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 +++E + D + L+++ P + I +A+ + Sbjct: 79 FTGSLIGQDLPKENILFDIVETLRYAKDDPKISGLVLALGDLPETNLTKLRYIAKALNEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K I + Y ++ ++ + A V G Y K L+KL V+ Sbjct: 139 KASGKPIYAAGGFYNQSQYYLASYADKVYLAPDGAVLLKGYSSYSLYYKTLLEKLNVNTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF +++ +A + + + FV ++ +R I + LS Sbjct: 199 VFRVGTYKSAIEPFVRDDMSEEAKESASRWLSQLWGAFVDDIAANRQIKPESLN-LSMDE 257 Query: 212 IWT---------GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR-----KIKDWNPPKN 257 T A + +GL+D + +++V L + D+ P Sbjct: 258 FLTLLKKNDGDLAALSLNIGLVDQLATRQQVRAELIDVFGSNGEDSYNHISYYDYQPTMA 317 Query: 258 YWFCDLKNLSISSLLEDTI 276 F N + I Sbjct: 318 PSFSTSANDIAVVVASGAI 336 >gi|300951371|ref|ZP_07165213.1| signal peptide peptidase SppA [Escherichia coli MS 116-1] gi|300958660|ref|ZP_07170784.1| signal peptide peptidase SppA [Escherichia coli MS 175-1] gi|301647962|ref|ZP_07247737.1| signal peptide peptidase SppA [Escherichia coli MS 146-1] gi|331642370|ref|ZP_08343505.1| signal peptide peptidase SppA, 67K type [Escherichia coli H736] gi|300314711|gb|EFJ64495.1| signal peptide peptidase SppA [Escherichia coli MS 175-1] gi|300449361|gb|EFK12981.1| signal peptide peptidase SppA [Escherichia coli MS 116-1] gi|301073933|gb|EFK88739.1| signal peptide peptidase SppA [Escherichia coli MS 146-1] gi|331039168|gb|EGI11388.1| signal peptide peptidase SppA, 67K type [Escherichia coli H736] Length = 666 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 367 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 426 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 427 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 486 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A MMQ +++ Y F+ LV+++R+ Sbjct: 487 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQLMMQLSIENGYKRFITLVADARH 545 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 546 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 604 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 605 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 633 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 67 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 126 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 127 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 186 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 187 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 246 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP ++ Sbjct: 247 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGA 306 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 307 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 354 >gi|157158760|ref|YP_001463065.1| protease 4 [Escherichia coli E24377A] gi|157080790|gb|ABV20498.1| protease 4 [Escherichia coli E24377A] Length = 618 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + K V+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKLVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 99.7 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|82776787|ref|YP_403136.1| protease 4 [Shigella dysenteriae Sd197] gi|81240935|gb|ABB61645.1| protease IV [Shigella dysenteriae Sd197] Length = 618 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVTKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D+ Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGLWMQVSGGDSKETASRGALLLDISGVIVDNPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNAVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|71907637|ref|YP_285224.1| peptidase S49 [Dechloromonas aromatica RCB] gi|71847258|gb|AAZ46754.1| Peptidase S49 [Dechloromonas aromatica RCB] Length = 320 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 69/281 (24%), Positives = 125/281 (44%), Gaps = 17/281 (6%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFS---WSSHVEDNSPHVARIAIRGQI-----EDSQELIE 55 ++ + L V L VV + W + E H A + + G I +++ L+ Sbjct: 31 SRRRWGIAFKALGFVYLLVVLIAVVDWGAGAEHQERHTAMVNLTGVIEAKGEANAENLVA 90 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGY 112 + + +A +I+ ++SPGGS I I++++ + KP+ V +M AS GY Sbjct: 91 ALNSAFDEKNAVGIILRINSPGGSPVQAGIINDEIRRLRGKYPAKPLYAVVEDMCASGGY 150 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 ++ A++ I + S+VGSIGVL +DK GV + + + K PFS P Sbjct: 151 YVAAAADNIYVNKASIVGSIGVLMDGFGFTGTMDKAGVERRLLTAGENKGFLDPFSPQAP 210 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 + Q +++ + F+ +V R +T + G +WTGA++ ++GL D G + Sbjct: 211 QHKAHAQLLLNDIHKQFIDVVKAGRGKRLKETPEMFSGLMWTGAQSIQLGLADDFGSVDS 270 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273 V + + K+ D++ N K L S+ Sbjct: 271 VARDIIK------AEKVLDYSVKDNIAERFAKRLGASTFAG 305 >gi|260583283|ref|ZP_05851058.1| signal peptide peptidase SppA, 67K type [Haemophilus influenzae NT127] gi|260093643|gb|EEW77556.1| signal peptide peptidase SppA, 67K type [Haemophilus influenzae NT127] Length = 615 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 72/256 (28%), Positives = 128/256 (50%), Gaps = 14/256 (5%) Query: 36 PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 +A + + G I D + + + + D+S A+++ ++SPGGSA+A E I Sbjct: 322 NKIAVVNVEGAIIDGESDDENSGGDTIARILRKAHDDNSVKAVVLRVNSPGGSAFASEII 381 Query: 87 FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + + ++ KPVI + MAAS GY IS ++ I+A E ++ GSIG+ +P + + Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADENTITGSIGIFAMFPTFENSI 441 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GVS V ++ + S FS + + Q ++ Y F+ +VS+ R + + Sbjct: 442 KKIGVSSDGVSTTELANT-SAFSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVD 500 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L+ G++W G++A + GL+D +G E L + I+D++ WF D Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAIQDFSVE---WFTDDNV 557 Query: 266 LSISSLLEDTIPLMKQ 281 IS+LL DT ++ Sbjct: 558 SLISTLLRDTKKGAQE 573 Score = 82.4 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 55/283 (19%), Positives = 107/283 (37%), Gaps = 37/283 (13%) Query: 2 EFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--------- 52 + V+ + +V+L LV + S + + G + D+++ Sbjct: 17 DLVMNVVFLGFVLL-LVAIIGFSSGGKKSTALTSEGALLLNLDGYLADNRDETLRWQDAL 75 Query: 53 ----------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKN 95 ++ I++ D L++ L+ G A + I AI + KN Sbjct: 76 SELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISQFKN 135 Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 + + + Y ++ ++ I V G+ + Y K LDKL V+ Sbjct: 136 AGKPVIAYADNYSQGQYYLASFADEIYLNSIGKVDIHGLSQENLYFKEMLDKLAVTPHIF 195 Query: 156 KSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-------- 205 + K+ PF ++++ +A MQ + ++ +V VSE+R I D L Sbjct: 196 RVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRKIKKDNVLPNAKQYLS 255 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L + + A A++ GL+ V + ++ + L AL S K Sbjct: 256 DLKALKGNSTAYAQQRGLVTDVVTRLDLDKKLTALFGKGSDGK 298 >gi|68249944|ref|YP_249056.1| protease IV [Haemophilus influenzae 86-028NP] gi|68058143|gb|AAX88396.1| protease IV [Haemophilus influenzae 86-028NP] Length = 615 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 70/250 (28%), Positives = 124/250 (49%), Gaps = 14/250 (5%) Query: 36 PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 +A + + G I D + + + + D+S A+I+ ++SPGGSA+A E I Sbjct: 322 NKIAVVNVEGTIIDGESDEENAGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEII 381 Query: 87 FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + + ++ KPVI + MAAS GY IS ++ I+A ++ GSIG+ +P + + Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFTMFPTFENSI 441 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV V ++ + S FS + + Q ++ Y F+ +VS+ R + + Sbjct: 442 KKIGVHADGVSTTELANT-SAFSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVD 500 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L+ G++W G++A + GL+D +G E L + ++D++ WF D Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 557 Query: 266 LSISSLLEDT 275 IS+LL DT Sbjct: 558 SLISTLLRDT 567 Score = 83.5 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 55/287 (19%), Positives = 109/287 (37%), Gaps = 44/287 (15%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52 ++ + V L V L V S+SS + + S + + G + D+++ Sbjct: 14 FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTALTSEGALLLNLDGYLADNRDETLRWQD 73 Query: 53 ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93 ++ I++ D L++ L+ G A + I AI Sbjct: 74 ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHF 133 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K+ + + + Y ++ ++ I V G+ + Y K LDKL V+ Sbjct: 134 KDAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF ++++ +A MQ + ++ +V VSE+RNI D+ L + + Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDRI--LPNAK 251 Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + A++ GL+ V + ++ + AL S K Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKKFTALFGKGSDGK 298 >gi|269102166|ref|ZP_06154863.1| protease IV [Photobacterium damselae subsp. damselae CIP 102761] gi|268162064|gb|EEZ40560.1| protease IV [Photobacterium damselae subsp. damselae CIP 102761] Length = 617 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 66/266 (24%), Positives = 123/266 (46%), Gaps = 12/266 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 ++ S + + +A + G I D E + D++ A Sbjct: 307 ISYYDYLASLTDINVPSKNKIAVVIASGAIIDGPQRPGTTGGDTTAELLREARFDNNVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +I+ + SPGGSA+A E I + ++ KPV+ + +AAS GY IS +++ I+A T+ Sbjct: 367 VILRVDSPGGSAFASELIRNEVDALQKAGKPVVVSMSSVAASGGYWISSSADKIIANPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 + GSIG+ + L+KLG+ V ++P + ++ Q VD Y Sbjct: 427 ITGSIGIFAVMTTFEKGLNKLGIYNDGVGTTPFAGVGVT-RALPQGVGEIFQLGVDHGYQ 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F+ LVS+ R++ + ++ GR+WTGA+AK++GL+D +G + + L + Sbjct: 486 RFIGLVSKYRHMSLAQVDKIAQGRVWTGADAKRLGLVDELGDFDTAISAAVDLAKI-NDY 544 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLE 273 +I+ P + L+ + + + Sbjct: 545 QIEWMQQPLSPMEMFLQQFTTEARTQ 570 Score = 94.3 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 42/326 (12%), Positives = 110/326 (33%), Gaps = 40/326 (12%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVE-DNSPHVARIAIRGQIEDSQE------- 52 + F + + ++ + L ++ E P + + G I + ++ Sbjct: 19 LSFTRQLVLNLIFLILVGALFFAFYQGDKDTETQPQPGALVLDLSGPIVEQKDPVNPVDS 78 Query: 53 ------------------LIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93 ++E I S D+ L+++L + P S I +AI Sbjct: 79 LLSEAMGKEPQQENVLFDIVEAIRAASGDNDIKGLVLNLQNMPETSLTKLRYIAKAITDF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + + + + Y ++ ++ + + + G Y K L+KL V+ Sbjct: 139 KQSGKPVYAYGDNFSQSQYYLASYADKVFMSPDGAILLTGYGSYTLYYKSLLEKLDVTTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-------- 203 + K+ P+ ++ A + ++ + + V+++RNI + Sbjct: 199 VFRVGTYKSAIEPYIRDNMSDAAKEANTVWLNQLWQAYTSDVAKNRNIDAAELTPKLPEF 258 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI---RKIKDWNPPKNYWF 260 L + K+GL+D + E+ Q +I ++ + Sbjct: 259 IAALKSVDGDFAKLSVKLGLVDSLMTHPEMTQEFEKTFGTDQDHNFNQISYYDYLASLTD 318 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQG 286 ++ + + +++ + ++ + G Sbjct: 319 INVPSKNKIAVVIASGAIIDGPQRPG 344 >gi|197285358|ref|YP_002151230.1| protease IV [Proteus mirabilis HI4320] gi|227355792|ref|ZP_03840185.1| protease IV (signal peptide peptidase) [Proteus mirabilis ATCC 29906] gi|194682845|emb|CAR43150.1| protease IV (signal peptide peptidase) [Proteus mirabilis HI4320] gi|227164111|gb|EEI49008.1| protease IV (signal peptide peptidase) [Proteus mirabilis ATCC 29906] Length = 618 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 69/265 (26%), Positives = 132/265 (49%), Gaps = 14/265 (5%) Query: 32 EDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYA 82 E+ ++A + ++G I D + + +I + + + AL++ ++SPGGS A Sbjct: 325 ENEDGNIAVVVVQGAIIDGESIPGSAGGSTIANQIRQARLNPNIRALVLRVNSPGGSVSA 384 Query: 83 GEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 E I I + +K V+ + MAAS GY IS ++ I+A+ ++L GSIG+ Sbjct: 385 SEQIRSEIAAFKQEKKHVVVSMGGMAASGGYWISTPASKIIASPSTLTGSIGIFGVINTF 444 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + L+ +GV V +SP+ +++ ++ Q ++S Y F++LV+ESRN Sbjct: 445 ENSLESIGVHSDGVSTSPLAGLSVT-NKLPEDFSELFQLNIESGYKTFLKLVAESRNKTP 503 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 + ++ GR+W G +AK+VGL+D G ++ + + + + + DW P+ Sbjct: 504 AQVDRIAQGRVWVGVDAKQVGLVDEFGDFDDAINAAATMAKIK--QPVIDWMKPELSLSE 561 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQG 286 + +S+S+ + IP Q + Sbjct: 562 QIL-MSLSANAKAIIPDPLQAYLPA 585 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 40/278 (14%), Positives = 92/278 (33%), Gaps = 39/278 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + F+ K I + L + + + + + + + ++G I D Sbjct: 19 INFIRKLILNVIFFFLLFMGVGLYFIVQETQKPTDYQGALLVDLKGVIVDQTANQNPLGQ 78 Query: 52 -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91 E+++ + + + D +++ L G+ + +A+ Sbjct: 79 MSRELLGVSGSQLQENSLFEVVDTLRKAATDPKIKGMVLKLDEFAGADQPSLNYVGKALT 138 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + K I + + Y ++ ++ I A VG G+ F Y K L+KL V+ Sbjct: 139 EFKKTGKPIYAISGYYSQPQYYLASYADKIYLASQGAVGIYGLGFSNLYYKSLLEKLKVN 198 Query: 152 IKSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT----- 204 + K+ P ++ +A +V + ++ V+E+R+I + Sbjct: 199 THIFRVGTYKSAVEPLMRDNMSDEARAASNRLVSVLWSNYLTQVAENRSITKEDVFPGAK 258 Query: 205 ---LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + L A L+D V + + Sbjct: 259 EMIVELRKADGDNATYALNRKLVDTVSSYAQFEADMKE 296 >gi|146329644|ref|YP_001209888.1| SspA family peptidase [Dichelobacter nodosus VCS1703A] gi|146233114|gb|ABQ14092.1| peptidase SspA family [Dichelobacter nodosus VCS1703A] Length = 323 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 74/275 (26%), Positives = 128/275 (46%), Gaps = 19/275 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVED----NSPHVARIAIRGQIE-----DSQELIERI 57 KI R++ + L L + + + PHVA I I G I +++++ E + Sbjct: 33 KIIFRFIFIGLAVLYLAVMTQIEQKNKVKTVHEPHVALIHISGVIGAQEQSNARDINEVL 92 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLIS 115 + +D A++++++SPGGS I+R I ++ +N+ PV + +M AS Y I+ Sbjct: 93 KNAFTNDQTQAVVLNINSPGGSPVQSGKIYREIMRLKKENKIPVYAFIEDMGASGAYYIA 152 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I S+VGSIGV+ V L KLG+ + + KA +P + + + Sbjct: 153 AAADQIYTDPASIVGSIGVISGGVGVGDLLKKLGLESRIFTAGAHKAFLNPAEPLKKEEL 212 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPY--DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 MQ ++D + F+ V E R +K L G WTG +A +GL+D + +V Sbjct: 213 AHMQTLLDDLHQQFIAAVKEGRGERINAEKNPELFSGLFWTGTQALPLGLVDSLDDFSQV 272 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 L D + D+ P K+ W L+ + Sbjct: 273 ------LARDFKDIAVIDYTPEKSPWEAFLRQTAS 301 >gi|253773279|ref|YP_003036110.1| protease 4 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161824|ref|YP_003044932.1| protease 4 [Escherichia coli B str. REL606] gi|297519580|ref|ZP_06937966.1| protease 4 [Escherichia coli OP50] gi|242377487|emb|CAQ32240.1| protease IV, subunit of protease IV, a signal peptide peptidase [Escherichia coli BL21(DE3)] gi|253324323|gb|ACT28925.1| signal peptide peptidase SppA, 67K type [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973725|gb|ACT39396.1| protease IV (signal peptide peptidase) [Escherichia coli B str. REL606] gi|253977919|gb|ACT43589.1| protease IV (signal peptide peptidase) [Escherichia coli BL21(DE3)] gi|309701988|emb|CBJ01302.1| protease IV [Escherichia coli ETEC H10407] Length = 618 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A MMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQLMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 99.7 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|16129720|ref|NP_416280.1| protease IV (signal peptide peptidase) [Escherichia coli str. K-12 substr. MG1655] gi|89108605|ref|AP_002385.1| protease IV [Escherichia coli str. K-12 substr. W3110] gi|170081423|ref|YP_001730743.1| protease IV (signal peptide peptidase) [Escherichia coli str. K-12 substr. DH10B] gi|238900980|ref|YP_002926776.1| protease IV (signal peptide peptidase) [Escherichia coli BW2952] gi|256022570|ref|ZP_05436435.1| protease 4 [Escherichia sp. 4_1_40B] gi|307138425|ref|ZP_07497781.1| protease 4 [Escherichia coli H736] gi|34395936|sp|P08395|SPPA_ECOLI RecName: Full=Protease 4; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase gi|1742877|dbj|BAA15557.1| protease IV [Escherichia coli str. K12 substr. W3110] gi|1788064|gb|AAC74836.1| protease IV (signal peptide peptidase) [Escherichia coli str. K-12 substr. MG1655] gi|169889258|gb|ACB02965.1| protease IV (signal peptide peptidase) [Escherichia coli str. K-12 substr. DH10B] gi|238863289|gb|ACR65287.1| protease IV (signal peptide peptidase) [Escherichia coli BW2952] gi|260449112|gb|ACX39534.1| signal peptide peptidase SppA, 67K type [Escherichia coli DH1] gi|315136407|dbj|BAJ43566.1| protease 4 [Escherichia coli DH1] gi|323940567|gb|EGB36758.1| signal peptide peptidase SppA [Escherichia coli E482] Length = 618 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A MMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQLMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP ++ Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|260556527|ref|ZP_05828745.1| periplasmic serine protease [Acinetobacter baumannii ATCC 19606] gi|260409786|gb|EEX03086.1| periplasmic serine protease [Acinetobacter baumannii ATCC 19606] Length = 365 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 65/295 (22%), Positives = 127/295 (43%), Gaps = 14/295 (4%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQI-------EDSQELI 54 K + Y++ +V + + S +S H+A + I G I +S++ Sbjct: 72 FFKTLTFIYLLFIIVLMGKGCSTTKDGSTASSSSAHLAVVDIIGTIDASSNQAVNSEDTN 131 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAG 111 + ++R ++ A+ ++++SPGGS + I++ I+ + K V + +M AS Sbjct: 132 KALKRAFEASNSKAIALNINSPGGSPVQSDEIWQEIRYLKKEHPDKKVYAVIGDMGASGA 191 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I+ +SLVGSIGV+ + KLG+ +++ + K S +N Sbjct: 192 YYIASAADEIIVNPSSLVGSIGVIMPNYGITGLAQKLGIEDRTLTAGTNKDILSMTKPIN 251 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 P Q +Q V+D+ + F+ V E R + G WTG +A ++G+ D G Sbjct: 252 PVQRQHIQSVLDNVHTHFINAVKEGRGKRLKSNDPAIFSGLFWTGEQAIQLGVADRSGNI 311 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 + + L L ++ +S + + + + K+Q Sbjct: 312 TSLMREL-KLDNKVDYTIERNPLQSILGRMGSEMGKGLSESVAERLQTSQDAKLQ 365 >gi|194438574|ref|ZP_03070663.1| protease 4 [Escherichia coli 101-1] gi|194422584|gb|EDX38582.1| protease 4 [Escherichia coli 101-1] gi|323937024|gb|EGB33304.1| signal peptide peptidase SppA [Escherichia coli E1520] gi|323962014|gb|EGB57612.1| signal peptide peptidase SppA [Escherichia coli H489] gi|323972549|gb|EGB67753.1| signal peptide peptidase SppA [Escherichia coli TA007] Length = 622 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A MMQ +++ Y F+ LV+++R+ Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQLMMQLSIENGYKRFITLVADARH 501 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 560 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589 Score = 99.3 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 23 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 83 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 143 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 262 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 310 >gi|52425162|ref|YP_088299.1| SppA protein [Mannheimia succiniciproducens MBEL55E] gi|52307214|gb|AAU37714.1| SppA protein [Mannheimia succiniciproducens MBEL55E] Length = 608 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 116/227 (51%), Gaps = 11/227 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGG 78 SS +A I I G I D + + + + + +D + A+++ ++SPGG Sbjct: 301 SSDFVQAKNKIAVINIEGTIVDGETNEQGVGGDSIAQLLRKAYKDKNVKAVVLRVNSPGG 360 Query: 79 SAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 SA+A E I + + ++ KPV+ + MAAS GY IS ++ IVA + +L GSIG+ Sbjct: 361 SAFASEVIRQEAENLQTAGKPVVVSMGAMAASGGYWISSTADYIVADKNTLTGSIGIFAV 420 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P ++ + K G+S V +S + PS FS + + +Q ++ Y F+ +VS+ R Sbjct: 421 LPTLENTIKKAGISADGVTTSAL-VSPSGFSPLTAELKDSLQLQIEHGYERFLSVVSKGR 479 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 ++ + ++ GR+W G +A K+ L+D +G + + L + Sbjct: 480 SLTKQQVDNVAQGRVWLGEDAYKMKLVDELGDFDTAVRKAQELANGK 526 Score = 80.4 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 106/302 (35%), Gaps = 43/302 (14%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVAR-IAIRGQIEDSQ--------------- 51 I + +L L + + A + + G + D + Sbjct: 3 IVFLFFVLLLAAIVSLTTMVKEKPNLTGDQGALLVNLNGYLADEREDGLNWRNALKKLND 62 Query: 52 ----------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVI 100 +++ IE + D+ L++ L+ G + + +AI+ + + Sbjct: 63 EQVASQYSTFDVVYAIENAANDERIKGLVLDLNYLDGGDLPALDYVGKAIRDFQKSGKKV 122 Query: 101 TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160 + + + Y ++ ++ I VG G+ Q Y K L+KL ++ + Sbjct: 123 IAYADNYSQSQYFLASYADEIYLNPIGEVGIEGLSAQNLYFKSMLEKLEITPHVFRVGTY 182 Query: 161 KAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA-- 216 K+ P +++P+A + + + + + ++E+RNI + L + ++ Sbjct: 183 KSAVEPLLRDDMSPEAKANTEQWLGTMWSNYQERIAENRNIAKNSV--LPEAGVYVDELK 240 Query: 217 --------EAKKVGLIDVVGGQEEVWQSLYALGVDQS--IRKIKDWNPPKNYWFCDLKNL 266 AKK + V + ++ Q+L AL + K D++ LK Sbjct: 241 ALNGDITAYAKKHKFVTQVASRLKLSQNLTALFGENEQNEPKTVDFDTYLAALPDRLKGD 300 Query: 267 SI 268 S Sbjct: 301 SS 302 >gi|146299478|ref|YP_001194069.1| signal peptide peptidase SppA, 67K type [Flavobacterium johnsoniae UW101] gi|146153896|gb|ABQ04750.1| signal peptide peptidase A, SppA, 67K type [Flavobacterium johnsoniae UW101] Length = 585 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 68/255 (26%), Positives = 121/255 (47%), Gaps = 10/255 (3%) Query: 31 VEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAY 81 +A I +G+I + + ++ +++ A+++ + SPGGSA Sbjct: 297 TNIADDQIAIIYAQGEIAGGEGDVNVIGEGSMRRSLQEARKNEDVKAIVLRIDSPGGSAL 356 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + I+R I+ K KPV+ + AAS GY I+C ++ I A ++ GSIGV P Sbjct: 357 TSDLIWREIEITKKVKPVVVSMGNYAASGGYYIACNADKIFAESNTITGSIGVFGVLPNF 416 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 P +KLG++ + VK+ A SPF V+ K + V+ Y FV V+E R + + Sbjct: 417 TPLANKLGINTEQVKTHENSANYSPFVPVDEKFKAFTLEGVEQIYKTFVTHVAEGRKMTF 476 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 + ++ GR+W+G EA K+GL+D +GG + + + +++ + + Sbjct: 477 AQVDSIAQGRVWSGTEAVKIGLVDKIGGLNDAIAEAAKIAKIKD-YSTQNYPEYEKKFSD 535 Query: 262 DLKNLSISSLLEDTI 276 + NL + E I Sbjct: 536 LMANLPFAQSKEAFI 550 Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 90/226 (39%), Gaps = 6/226 (2%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 ++I IE D + + + + + A++ K + Sbjct: 75 VGLTDVINAIEAAKTDSNIKGISILNDQSSLGLAQYKDLRNALESFKKSGKFVWAYANTY 134 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 + Y ++ +N I + G+ + + K F +K G+ ++ ++ K+ PF Sbjct: 135 SQKEYYLNSVANTIYLNPAGDLDFKGLSSEVMFFKDFQEKSGIHMEVIRHGKYKSAVEPF 194 Query: 168 --SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGAEAKKVGLI 224 ++++ + + +++S + +S+SRNIP DK +++G + T AK L+ Sbjct: 195 LENKMSDANREQVTALLNSIWSTVCSDISKSRNIPVDKLNEIANGLLARTPEMAKAQHLV 254 Query: 225 DVVGGQE---EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 D+V ++ + + D KI + +N L N++ Sbjct: 255 DIVAYEDVYHNAIKKALKVKGDDDYNKISILDYTQNNMNTALTNIA 300 >gi|75907910|ref|YP_322206.1| signal peptide peptidase A [Anabaena variabilis ATCC 29413] gi|75701635|gb|ABA21311.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Anabaena variabilis ATCC 29413] Length = 273 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 67/260 (25%), Positives = 129/260 (49%), Gaps = 5/260 (1%) Query: 36 PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 +ARI I G I + ++E ++ + AL++ + SPGG+ + I+ A++++ Sbjct: 11 KQIARIEITGAIASGTRKRVLEALKTVEE-KKFPALLLRIDSPGGTVGDSQEIYSALKRL 69 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + + ++ ++AS G I + I+A ++ GSIGV+ + ++ LDK+GVS K Sbjct: 70 REKIKIVASFGNISASGGVYIGMGAEHIMANPGTITGSIGVILRGNNLERLLDKVGVSFK 129 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 +KS P K S E+ ++Q+++D+SY FV+ V+E R++ +K +DGRI+ Sbjct: 130 VIKSGPYKDILSFDRELTEPEQDILQELIDTSYQQFVQTVAEGRSLAVEKVKSFADGRIF 189 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS--SL 271 TG +A ++G++D +G +EE + L + + + S S Sbjct: 190 TGQQALELGVVDRLGTEEEARRWTAELVGLDPEKTPCYTLEERKPLLSRVLPGSRKGYSR 249 Query: 272 LEDTIPLMKQTKVQGLWAVW 291 L +I ++ +W Sbjct: 250 LGASIDWLEFEMSTSGLPLW 269 >gi|301020953|ref|ZP_07185005.1| signal peptide peptidase SppA [Escherichia coli MS 196-1] gi|299881708|gb|EFI89919.1| signal peptide peptidase SppA [Escherichia coli MS 196-1] Length = 622 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A MMQ +++ Y F+ LV+++R+ Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQLMMQLSIENGYKRFITLVADARH 501 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 560 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 23 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 83 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 143 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP ++ Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGA 262 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 310 >gi|159028319|emb|CAO87217.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 273 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 74/269 (27%), Positives = 140/269 (52%), Gaps = 7/269 (2%) Query: 31 VEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 +ARI I G I + +++ +E I ++ AL++ + SPGG+ + I+ Sbjct: 6 KPKTRKQIARIEITGAIASDTRKRVLKALE-IVKERQYPALLLRIDSPGGTVGDSQEIYE 64 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 A+++++ +I ++AS G I +N I+A ++ GSIGV+ + ++ LDK+ Sbjct: 65 ALKRLQKTTKIIASFGNISASGGVYIGMGANYIMANPGTITGSIGVILRGNNLERLLDKV 124 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 GVS K +KS P K S E+ + +++QD++D+SY F++ V+ +RN+ ++ + Sbjct: 125 GVSFKVIKSGPYKDILSFDRELTDEEERILQDMIDTSYQQFLQTVAGARNLDVNQVKSFA 184 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFCDLKN-L 266 DGRI+TG +A ++G++D +G +E+ L K + PK N Sbjct: 185 DGRIFTGQQALELGVVDRLGTEEDARLWALELAGLPPDKTKCQTIEEPKPLLSRLTGNRS 244 Query: 267 SISSLLEDTIPLMK-QTKVQG-LWAVWNP 293 I L+ T+ ++ + +V G L ++ P Sbjct: 245 QIPLGLQKTLQRLEFELEVNGQLLWLYRP 273 >gi|265766569|ref|ZP_06094398.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 2_1_16] gi|263252946|gb|EEZ24422.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 2_1_16] Length = 592 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 79/280 (28%), Positives = 139/280 (49%), Gaps = 19/280 (6%) Query: 2 EFVLKKIKTRYVM-----LSLVTLTVVYFSWSSHVEDNSPHV-ARIAIRGQIED------ 49 V +KT + L ++ L + + +D S ++ A G+I D Sbjct: 267 NDVRDYLKTLVKIDEDDRLPILGLEEMVNIKKNVPKDKSGNILAVYYASGEITDYAGSAA 326 Query: 50 ------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 ++I + ++ DD A+++ ++SPGGSA+A E I+ A++++K +KPVI + Sbjct: 327 SDEGIIGSKMIRDLRKLKEDDDVKAVVLRVNSPGGSAFASEQIWHAVKELKAKKPVIVSM 386 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 + AAS GY ISCA++ I+A T+L GSIG+ P VK +K+G++ VK++ Sbjct: 387 GDYAASGGYYISCAADSIIAEPTTLTGSIGIFGMIPNVKGLTEKIGLTYDVVKTNQFSDF 446 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 + VN ++Q ++ Y FV +E R++ DK +++GR+WTG AKK+GL Sbjct: 447 GNLMRPVNSDERALLQMMIGQGYDLFVSRCAEGRHMSKDKIEKIAEGRVWTGEMAKKIGL 506 Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 +D +GG + + + I + K+ Sbjct: 507 VDKLGGIGKALEIAAQKADLKG-YTIISYPAKKDILSTLF 545 Score = 97.8 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 99/264 (37%), Gaps = 26/264 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49 ++ +VTL + S + V + ++G + Sbjct: 22 LFIIGVVTLVGIISSSDTETVVKKNSVMMLDLKGTLVERTQESLEGLLGKFTGETADTYG 81 Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 +++ I++ DD+ + + S S + +AI +A+ K + + Sbjct: 82 LDDILASIKKAKEDDNIKGIYIQASWLDASYASLQAIRKALDDFKESGKFVVAYSDNYTQ 141 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y +S ++ ++ ++ G+ + K L KLG+ ++ K K+ PF Sbjct: 142 GLYYLSSVADKVMLNPKGMIEWRGLASAPIFYKDLLQKLGIEMQVFKVGTYKSAVEPFTA 201 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225 +E++P + + + S ++ + VS SR I D + +D + E+ K GL D Sbjct: 202 TEMSPANREQVTAFIGSIWNQILDGVSASRKIGKDSLNMYADRMLMFYPSDESVKCGLAD 261 Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249 + Q +V L L ++ Sbjct: 262 TLIYQNDVRDYLKTLVKIDEDDRL 285 >gi|284929652|ref|YP_003422174.1| signal peptide peptidase A [cyanobacterium UCYN-A] gi|284810096|gb|ADB95793.1| signal peptide peptidase A [cyanobacterium UCYN-A] Length = 272 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 80/261 (30%), Positives = 139/261 (53%), Gaps = 7/261 (2%) Query: 34 NSPHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 + +ARI I+G I L+E +E + AL++ + SPGG+ + I+ A++ Sbjct: 9 TTKQIARIEIKGVINSETRKFLLEALETVKE-KKFPALLLRIDSPGGTVGDSQEIYEALK 67 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 K++ + ++ ++AS G IS + I+A ++ GSIGV+ + K L+K+GVS Sbjct: 68 KLQKKTKIVATFGNISASGGVYISMGAPYIMANPGTITGSIGVILRGNNFKELLNKIGVS 127 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + VKS P K S +++P+ +++Q+++D SY F+ +S+ RN+ DKT +DGR Sbjct: 128 FQVVKSGPYKDILSFDRQLSPEEEKILQEMIDISYQQFITTISKERNLDMDKTKSFADGR 187 Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR----KIKDWNPPKNYWFCDLKNLS 267 I+TG +A K+G++D +G +E+ L + I++ P N F N S Sbjct: 188 IFTGEQALKLGMVDRLGSEEDARCWAAELVGLDPEKTKCFTIEESKPFLNRIFSKNNNKS 247 Query: 268 ISSLLEDTIPLMKQTKVQGLW 288 +L+ D I +T Q LW Sbjct: 248 KFTLMNDRIEFELKTSGQLLW 268 >gi|166364670|ref|YP_001656943.1| protease [Microcystis aeruginosa NIES-843] gi|166087043|dbj|BAG01751.1| protease [Microcystis aeruginosa NIES-843] Length = 273 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 75/269 (27%), Positives = 141/269 (52%), Gaps = 7/269 (2%) Query: 31 VEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 +ARI I G I + +++ +E I ++ AL++ + SPGG+ + I+ Sbjct: 6 KPKTHKQIARIEITGAIASDTRKRVLKALE-IVKERQYPALLLRIDSPGGTVGDSQEIYE 64 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 A+++++ +I ++AS G I +N I+A ++ GSIGV+ + ++ LDK+ Sbjct: 65 ALKRLQKNTKIIASFGNISASGGVYIGMGANYIMANPGTITGSIGVILRGNNLERLLDKV 124 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 GVS K +KS P K S E+ + +++QD++D+SY F++ V+ +RN+ ++ + Sbjct: 125 GVSFKVIKSGPYKDILSFDRELTDEEERILQDMIDTSYQQFLQTVAGARNLDVNQVKSFA 184 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFCDLKNLS 267 DGRI+TG +A ++G++D +G +E+ L K + PK N S Sbjct: 185 DGRIFTGQQALELGVVDRLGTEEDARLWALELAGLPPDKTKCQTIEEPKPLLSRLTGNRS 244 Query: 268 -ISSLLEDTIPLMK-QTKVQG-LWAVWNP 293 I L+ T+ ++ + +V G L ++ P Sbjct: 245 PIPPGLQKTLQRLEFELEVNGQLLWLYRP 273 >gi|294635913|ref|ZP_06714359.1| signal peptide peptidase SppA [Edwardsiella tarda ATCC 23685] gi|291090759|gb|EFE23320.1| signal peptide peptidase SppA [Edwardsiella tarda ATCC 23685] Length = 617 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 67/266 (25%), Positives = 119/266 (44%), Gaps = 13/266 (4%) Query: 32 EDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAYA 82 + +A I G I D + +I + D + A+I+ ++SPGGS A Sbjct: 321 KSGKGQIAVIFASGAIIDGEATPGSVGGDTTANQIRQARLDPAIRAIILRVNSPGGSVTA 380 Query: 83 GEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 E I + + KPV+ + +AAS GY IS +N I+A+ T+L GSIG+ Sbjct: 381 SEEIRSELAAARSAGKPVVVSMGGLAASGGYWISTPANYIIASPTTLTGSIGIFGVINTF 440 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + L+KLGV V +S + + + +MQ + + Y F+ LV+E+R+ Sbjct: 441 EKPLNKLGVYTDGVATSSLADT-ALTKALPQSVSDLMQLTIANGYQRFINLVAEARHKTP 499 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPKNYW 259 ++ ++ GR+W G +AK GL+D +G ++ L + ++ D Sbjct: 500 EQVDQIAQGRVWLGIDAKANGLVDQLGDFDDAVAKAAQLAGIKQPRLQWYVDTPSVGEML 559 Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQ 285 L +SL + ++ + +Q Sbjct: 560 LSQLTGSVQASLPQALQGVVPASLLQ 585 Score = 77.0 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 99/281 (35%), Gaps = 39/281 (13%) Query: 1 MEFVLKK-IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + F+ + + ++L LV + + S + + G + D+ Sbjct: 19 LNFIREFILNLFLLLLILVGVGIYLQLQDKPAAPASKGALLVDLNGVVVDNPTLNNKFGQ 78 Query: 52 -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91 +L++ + + D + T L++SL++ G+ + +A+ Sbjct: 79 LGRELLGMRGNTLQENSLFDLVDTLRQAKDDANITGLVLSLNNFVGADQPSLRYLGKALS 138 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + + I V E + A Y ++ ++ I + V G+ Y K LDKL VS Sbjct: 139 EFRASGKPIIAVGESYSQAQYFLASYADKIYLSPQGSVALQGMATNNLYYKSLLDKLDVS 198 Query: 152 IKSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT----L 205 + K+ P +++P+A ++ + ++ V+ +R++ + Sbjct: 199 THIFRVGTYKSAVEPLMRDQMSPQARSADSQWLNGMWDNYLTTVAANRHLSVQQLFPGAD 258 Query: 206 VLSDGRIWTG----AEAKKVGLIDVVGGQEEVWQSLYALGV 242 L G TG A +D + + E L Sbjct: 259 QLIKGLQATGGDMAQYAVLHRWVDGLASRTEAEGILAKQFG 299 >gi|88807555|ref|ZP_01123067.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp. WH 7805] gi|88788769|gb|EAR19924.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp. WH 7805] Length = 270 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 72/252 (28%), Positives = 127/252 (50%), Gaps = 5/252 (1%) Query: 41 IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK- 97 IAI G I S + +++ + + + AL++ + SPGG+ + I A+ +++ + Sbjct: 16 IAIEGAISGSTRRRVLKALREVQERE-FPALLLRIDSPGGTVGDSQEIHAALLRLREKGC 74 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 V+ ++AS G + A+ IVA ++ GSIGV+ + + LDK+G+ ++VKS Sbjct: 75 RVVASFGNISASGGVYVGVAAETIVANPGTITGSIGVILRGNNLSELLDKIGIRFETVKS 134 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 K SP ++P+ Q++QD++DSSY FV V+E R + D +DGR+++GA+ Sbjct: 135 GTYKDILSPDRALSPEERQLLQDLIDSSYSQFVDAVAEGRGLEPDAVRAFADGRVFSGAQ 194 Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQSIR-KIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 AK +GL+D +G +E L R + P+ L S+ S + + Sbjct: 195 AKDLGLVDELGDEEHARVLAARLADLDEERCRPVTLGKPRKSLLQGLPGSSLLSAMHQRL 254 Query: 277 PLMKQTKVQGLW 288 + Q LW Sbjct: 255 NTELELSGQLLW 266 >gi|309751034|gb|ADO81018.1| Protease IV [Haemophilus influenzae R2866] Length = 615 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 70/256 (27%), Positives = 126/256 (49%), Gaps = 14/256 (5%) Query: 36 PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 +A + + G I D + + + + D+S A+I+ ++SPGGSA+A E I Sbjct: 322 NKIAVVNVEGTIIDGESDEENAGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEII 381 Query: 87 FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + + ++ KPVI + MAAS GY IS ++ I+A ++ GSIG+ +P + + Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFTMFPTFENSI 441 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV V ++ + S FS + + Q ++ Y F+ +VS+ R + + Sbjct: 442 KKIGVHADGVSTTELAKT-SAFSPLAKPVQDIYQTEIEYGYDRFLEIVSKGRQLSKTQVD 500 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L+ G++W G++A + GL+D +G E L + ++D++ WF D Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 557 Query: 266 LSISSLLEDTIPLMKQ 281 IS+LL DT ++ Sbjct: 558 SLISTLLRDTKKGAQE 573 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 55/287 (19%), Positives = 108/287 (37%), Gaps = 44/287 (15%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52 ++ + V L V L V S+SS + + + + G + D+++ Sbjct: 14 FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTTLTGDGALLLNLDGYLADNRDETLRWQD 73 Query: 53 ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93 ++ I++ D L++ L+ G A + I AI Sbjct: 74 ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHF 133 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K+ + + + Y ++ ++ I V G+ + Y K LDKL V+ Sbjct: 134 KDAGKPVIVYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF ++++ +A MQ + ++ +V VSE+RNI D L + + Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDNI--LPNAK 251 Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + A++ GL+ V + ++ + L AL S K Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKKLAALFGKGSDGK 298 >gi|113476113|ref|YP_722174.1| signal peptide peptidase A [Trichodesmium erythraeum IMS101] gi|110167161|gb|ABG51701.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49 [Trichodesmium erythraeum IMS101] Length = 272 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 71/259 (27%), Positives = 133/259 (51%), Gaps = 4/259 (1%) Query: 36 PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 +ARI I G I ++++E ++ + AL++ + SPGG+ + I+ A++K+ Sbjct: 11 KQIARIEINGVIASETRKQVLEALKTVEE-RKFPALLLRIDSPGGTVADSQEIYNALKKL 69 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + + ++ ++AS G I + I++ ++ GSIGV+ + ++ L+K+GVS K Sbjct: 70 QEKVKIVASFGNISASGGVYIGMGAQNIMSNPGTITGSIGVILRGNNIERLLEKVGVSFK 129 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 VKS P K + E+ Q++QD++D SY FV+ V+E+RN+ + +DGRI+ Sbjct: 130 VVKSGPYKDILAFDREMTAPEKQILQDLIDFSYQQFVQTVAEARNLAVETVKSFADGRIF 189 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 TG +A ++G++D +G +E+ + L D + PK + L N +SS L Sbjct: 190 TGQQALELGVVDRLGTEEDARKWACNLVDLDPEKTESFTLEKPKTFLNKVLNNNQVSSKL 249 Query: 273 EDTIPLMKQTKVQGLWAVW 291 ++ +W Sbjct: 250 SAAQSWVEFEVSTSGLPLW 268 >gi|254496591|ref|ZP_05109459.1| signal peptide peptidase [Legionella drancourtii LLAP12] gi|254354215|gb|EET12882.1| signal peptide peptidase [Legionella drancourtii LLAP12] Length = 321 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 67/286 (23%), Positives = 126/286 (44%), Gaps = 19/286 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWS---SHVEDNSPHVARIAIRGQI-----EDSQELIERIE 58 + R + L ++ F + PHV I + G+I ++ + + +E Sbjct: 38 RWLIRVIYLLIIGFAAYQFFGGGVDESGSNTKPHVGLIDLSGEIFDAKPANADDFAKGME 97 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH---EMAASAGYLIS 115 ++ A++V ++SPGGS E ++ I+ + + P I ++ ASA Y ++ Sbjct: 98 SAYKNSGLKAVVVRINSPGGSPVQAEYMYNTIKYYRAKHPEIKVYSVCVDLCASAAYYVA 157 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I A+ S+VGSIGV++ ++K+GV+ + + K PFS + Sbjct: 158 VAADDIYASPASMVGSIGVIYSGFGFVDAINKIGVTRRLQTAGANKGFLDPFSPDSDSQK 217 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q +Q ++D + F+ V + R G IWTG +A +GLID ++ + Sbjct: 218 QKLQVMLDIVHEQFINKVKDGRGSRLHSDNDTFSGLIWTGEQALPLGLIDGFASSGQLAR 277 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 + I + D+ +N + KNL + + D +PL Sbjct: 278 DVIK------IDSMIDYTHKQNLFDRVTKNLGTA--MADELPLSLG 315 >gi|307109116|gb|EFN57354.1| hypothetical protein CHLNCDRAFT_57181 [Chlorella variabilis] Length = 707 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 113/264 (42%), Gaps = 10/264 (3%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQ----------ELIERIERISRDDSATALIVSLSSP 76 S+ VA I G I + E+I ++ + ++ + A+++ + SP Sbjct: 354 PSTFGFTGKKAVAVIRASGAITGTSNGTGGRITSGEVIAQLRSVKKNKNVAAVVLRIDSP 413 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GG A A + ++R ++++ KPV+ + ++AAS GY ++ A + IVA ++ GSIGV+ Sbjct: 414 GGEALASDLMWREVRELAKTKPVVASMADVAASGGYYMAMACSKIVAEPLTITGSIGVVT 473 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 +K +KLG + +++ + + P+ + +Y F + S Sbjct: 474 GKFNLKSLYEKLGYAKENISKGKYAQLLAENKKFTPEEEALFDASATHAYESFRDKAALS 533 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R + + ++ GR+W+G A +GL+D VGG Q + ++ + Sbjct: 534 RGMSVEAMQEVAQGRVWSGQRAATLGLVDAVGGISRALQLAKQAAGLAADEGVRVLELSR 593 Query: 257 NYWFCDLKNLSISSLLEDTIPLMK 280 + L + ++ Sbjct: 594 AKTSPLQLVAGGGASLPAALGMLL 617 Score = 80.8 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 33/251 (13%), Positives = 91/251 (36%), Gaps = 14/251 (5%) Query: 34 NSPHVARIAIRGQIEDSQE-----------LIERIERISRDDSATALIVSLSSPGGSAYA 82 S + + GQI + + L + +++ + D ++V + Sbjct: 114 KSGSALVLKVSGQIAEQPQGRFSQTVSLPALCDCLKKAALDPRVAGVVVKIEPLACGWGK 173 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + + R ++ + E A Y ++ A + A ++ + G+ +++ Sbjct: 174 LQELRRHVEFFRKSGKFSMAYMERAGEKEYYLASAFEEVYAPPSASLSLRGMSVSGTFLR 233 Query: 143 PFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L+K+G+ + + K+ + ++++ + + ++D + FV V+ SR Sbjct: 234 GALEKVGIEPEVRRIGVYKSAGDQLLRTDMSEAQREQLSALLDDIFGGFVADVAASRGKT 293 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL-GVDQSIRKIKDWNPPKNYW 259 ++ D ++ E K+ G + + + E+ + L A G + + K+ Sbjct: 294 VEEVEEFLDSGVYDMEEFKRRGFVTDLLYECELEEVLKARTGGKEDELPKVGYRKYKSVR 353 Query: 260 FCDLKNLSISS 270 + Sbjct: 354 PSTFGFTGKKA 364 >gi|150401144|ref|YP_001324910.1| signal peptide peptidase SppA, 36K type [Methanococcus aeolicus Nankai-3] gi|150013847|gb|ABR56298.1| signal peptide peptidase SppA, 36K type [Methanococcus aeolicus Nankai-3] Length = 290 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 123/245 (50%), Gaps = 14/245 (5%) Query: 35 SPHVARIAIRGQIED--------------SQELIERIERISRDDSATALIVSLSSPGGSA 80 S V+ I + G+I + E I ++ +D A+++ ++SPGG Sbjct: 19 SDEVSIIELTGEISSNGGDGGVFGGYSPSADEYIRLLDNAENNDGVKAVVLKINSPGGEV 78 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 A E + R +++V +KPV+ + + AS Y+ + S+ IVA + S+VGSIGV+ + Sbjct: 79 VASEKLARKVKEVSEKKPVVAYIETIGASGAYMAAVPSDYIVAEKHSMVGSIGVIMGLSH 138 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 +K+G++ ++K+ K SP + + +M++ + D Y F++ V+E+R + Sbjct: 139 YYELYEKIGINTTTIKAGKYKDIGSPNRPMTDEEKKMLESMTDEMYGDFIKWVAENRGMD 198 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 +KT +++G+I+TG++AKK GL+D VG +++ L + + F Sbjct: 199 INKTYEVAEGKIYTGSQAKKAGLVDAVGVEQDAIDKASELANISNPTVVYYDANKPAGLF 258 Query: 261 CDLKN 265 N Sbjct: 259 GLSIN 263 >gi|323495030|ref|ZP_08100119.1| protease IV [Vibrio brasiliensis LMG 20546] gi|323310687|gb|EGA63862.1| protease IV [Vibrio brasiliensis LMG 20546] Length = 616 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 72/278 (25%), Positives = 133/278 (47%), Gaps = 13/278 (4%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALI 70 + + + + +A + G I D + + + DD A++ Sbjct: 309 FYEYQSTMTPKFDLAADDIAIVVASGAIMDGSQPRGTVGGDTVAALLRQARNDDKVKAVV 368 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + + SPGGSA+A E I ++ +K KPV+ + +AAS GY IS +++ IVA T+L Sbjct: 369 LRVDSPGGSAFASEVIRNEVEALKEAGKPVVVSMSSLAASGGYWISMSADRIVAQPTTLT 428 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIG+ + L+KLG+ V +SP ++ + ++ A Q Q ++ Y+ F Sbjct: 429 GSIGIFSVLTTFEKGLNKLGIYTDGVGTSPF-SDVGVTTGLSDGASQAFQMGIEHGYNRF 487 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIR 247 + LVS+SR IP ++ ++ GR+WTG +A + GL+D +G ++ + L + ++ Sbjct: 488 IGLVSQSREIPLEQVDNVAQGRVWTGQDALEFGLVDKIGDFDDAVELAAELAKVEQYNLY 547 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 +++ P + D N + L D ++ Q Sbjct: 548 WVEEPLSPAQQFIQDFMNQVSAHLGIDPTAMLPQALQP 585 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 42/296 (14%), Positives = 103/296 (34%), Gaps = 39/296 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVED-NSPHVARIAIRGQIEDSQ-------- 51 + F+ + + S+ + +Y S + V + I G I + Sbjct: 19 ITFIRLALVNLIFLASIGIIYFIYTSAEAPVPTVPKESALIVNISGPIVEQPTYVNPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93 ++++ I D+ + ++++L P + I +A+ + Sbjct: 79 LTGSFFGQSLPKENVLFDIVDTIRHAKDDEQISGIVLALRDMPETNLTKLRYIAKALNEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K I V ++ + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 139 KASGKPIYAVGDIYNQSQYYLASYADKIYLAPDGAVMLKGYSAYSLYYKTLLEKLDVNTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV----- 206 + K+ PF +++ +A + + + ++ V+ +R + + Sbjct: 199 VFRVGTYKSAIEPFVRDDMSKEAKESASRWLGQLWGAYIDDVATNRQLASETLNPDMDTF 258 Query: 207 ---LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDWNPPKN 257 L + + VGL+D + +++V + L + + D+ ++ Sbjct: 259 LKLLKQNNGDLASLSLNVGLVDQLATRQQVRKDLIEVFGSNGEDSYNYVDFYEYQS 314 >gi|322513703|ref|ZP_08066797.1| signal peptide peptidase SppA [Actinobacillus ureae ATCC 25976] gi|322120487|gb|EFX92397.1| signal peptide peptidase SppA [Actinobacillus ureae ATCC 25976] Length = 618 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 74/266 (27%), Positives = 133/266 (50%), Gaps = 12/266 (4%) Query: 33 DNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 +A I + GQI S +++++ + D + +I+ ++SPGGSA A Sbjct: 321 KAENKIAIINVEGQIVSGKSSQNSAGSDTIVKQLRKAREDKNVRGVILRVNSPGGSAMAS 380 Query: 84 EAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + ++ ++ KPV+T + MAAS GY IS S+ I+A+ T++ GSIG+ + Sbjct: 381 EIIRQELEAIQLAGKPVVTSMGGMAASGGYWISATSDKIIASPTTITGSIGIFGLATSFE 440 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LGV+ + SP + SP + + +++Q +++ Y F+ LVS RNIP Sbjct: 441 KTAKNLGVTEDGISLSPFASS-SPLKTLPKEQAEVIQISIENGYDRFLELVSRGRNIPKQ 499 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK-DWNPPKNYWFC 261 ++ G++W+G +A K GL+D +G + + + L Q K + + WF Sbjct: 500 AVDKIAQGQVWSGEDALKHGLVDELGDFDTAYDVITELVNQQRKVKGEAAIEHFRAQWFI 559 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287 D + +SS L+ + ++ + GL Sbjct: 560 DSDDSLLSSFLKGSNLKLQLGSLLGL 585 Score = 81.2 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 42/291 (14%), Positives = 100/291 (34%), Gaps = 50/291 (17%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH----------VARIAIRGQIEDSQ-- 51 + + I+ + L + ++ F+ ++ ++ S H ++ + G + D+ Sbjct: 11 IFRCIREFVLSLLFIIFVLICFALTTLLQQESKHQNQQPFFEKGALQLNLDGYLADNHDE 70 Query: 52 -----------------------ELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIF 87 ++ I + +D+ T L++ L G + + I Sbjct: 71 YGDLHRLIQNELGNNEPIKISTFDVARSINKAMKDERITGLVLDLGYFQGGDVASLQFIG 130 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 I+ K + + E + + Y ++ ++ I + V + Y K LDK Sbjct: 131 AQIEYFKQSGKPVIAIGEQYSQSQYYLASFADKIYLNKAGFVDIHAFSYSNIYFKTLLDK 190 Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 + + K+ PF +++P+A Q Q + S ++ + ++ +R I ++ Sbjct: 191 IEAVPHIFRVGTYKSAVEPFIRDDMSPEAKQNAQTWLTSIWNNVRQDIARNRQIQPEQV- 249 Query: 206 VLSDGRIWT----------GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 L D + + A LI V ++ +L Sbjct: 250 -LPDSQTYIAKYKALKGDDAQYALNQKLITEVTTPSQIQTALIQQFGADKE 299 >gi|312886123|ref|ZP_07745742.1| signal peptide peptidase SppA, 67K type [Mucilaginibacter paludis DSM 18603] gi|311301363|gb|EFQ78413.1| signal peptide peptidase SppA, 67K type [Mucilaginibacter paludis DSM 18603] Length = 589 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 119/246 (48%), Gaps = 11/246 (4%) Query: 37 HVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 +A + G+I S+++ + ++ +D A+++ ++SPGGS+ A + I+ Sbjct: 308 RIAIVYASGEIAGGNGDDNSIGSEKVSAALRKVRLNDKIKAVVLRVNSPGGSSLASDVIW 367 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL-D 146 R + K KPVI + + AAS GY I+CA++ I A ++ GSIG+ P ++ F D Sbjct: 368 REVLLTKKAKPVIVSMGDYAASGGYYIACAADSIYAEPNTITGSIGIFAMLPNMQKFFND 427 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 KLG++ VK+ + P+ ++Q V+ Y F + V++ R+ Sbjct: 428 KLGLTFDGVKTGKFADLGDVSRPLTPEERMILQAQVNRGYDTFTKAVADGRHKTQAYINS 487 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 + GR+WTG++A K+GL+D +G + +S + + + + + + + Sbjct: 488 IGQGRVWTGSQAIKIGLVDKLGNINDAIRSAAKMAKLKD-YSVVAYPEQTSKFKSLGRAF 546 Query: 267 SISSLL 272 + + Sbjct: 547 GAETRV 552 Score = 112 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 54/308 (17%), Positives = 105/308 (34%), Gaps = 30/308 (9%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE------------------- 48 I + +++ L+ + V S E S V RIA+ I Sbjct: 17 ISSFLLVIILIGIVSVATSGDKSTEVASNSVLRIALSSSIAERTPDNPLAELGFLGLNGD 76 Query: 49 ---DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 +++ I + D + + + SS E I A+ K I E Sbjct: 77 KAIGLNDILANIRKAKTDSNIKGIFLDESSMASGQATTEEIRNALIDFKKSGKFIIAYSE 136 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 + + + Y ++ ++ + + G Q + K LDKLG+ ++ +K K+ Sbjct: 137 IYSQSFYYLASVADKVYMNPKGIFEFHGFSSQITFFKGALDKLGIDMQIIKVGTYKSAVE 196 Query: 166 PFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVG 222 PF +++ + + S Y F+ +S SR I D +++ I +A K Sbjct: 197 PFFLDKMSDANRMQVNAYLGSLYDHFLTGISASRKINKDSLANIANNLLIQNPEDAVKYK 256 Query: 223 LIDVVGGQEEVWQSLYALGVDQSIRKIK-----DWNPPKNYWFCDLKNLSISSLLEDTIP 277 L+D + ++E+ L + IK ++ D NL + Sbjct: 257 LLDGLKYKDELLDELKDRTGVSKKKDIKSVNIGEYTKAGTDNDADTTNLDSRIAIVYASG 316 Query: 278 LMKQTKVQ 285 + Sbjct: 317 EIAGGNGD 324 >gi|293609877|ref|ZP_06692179.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828329|gb|EFF86692.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 338 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 67/301 (22%), Positives = 131/301 (43%), Gaps = 26/301 (8%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQI-------EDSQELI 54 K + Y++ +V + + S V +S H+A + I G I +S++ Sbjct: 45 FFKTLTFIYLLFIIVLMGKGCSTSKEGSAVSSSSAHLAVVDIIGTIDASSNQAVNSEDTN 104 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAG 111 + ++R ++ A+ ++++SPGGS + I++ I+ + K V + +M AS Sbjct: 105 KALKRAFEASNSKAVALNINSPGGSPVQSDEIWQEIRYLKKQHPDKKVYAVIGDMGASGT 164 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I+ +SLVGSIGV+ + KLG+ +++ + K S ++ Sbjct: 165 YYIASAADEIIVNPSSLVGSIGVIMPNYGITGLAQKLGIEDRTLTAGTNKDILSMTKPID 224 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 P Q +Q V+D+ + F+ V E R + G WTG +A ++G+ D G Sbjct: 225 PVQKQHIQSVLDNVHTHFITAVKEGRGKRLKSNDPAIFSGLFWTGEQAIQLGVADRSGNI 284 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK------NLSISSLLEDTIPLMKQTKV 284 + + L ++ D+ +N L +S + + + K+ Sbjct: 285 TSLMREL-------NLDNKVDYTIERNPLQSILGRMGAQIGQGVSESIAQEVQTSQSAKL 337 Query: 285 Q 285 Q Sbjct: 338 Q 338 >gi|262382242|ref|ZP_06075379.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 2_1_33B] gi|262295120|gb|EEY83051.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 2_1_33B] Length = 582 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 68/259 (26%), Positives = 122/259 (47%), Gaps = 14/259 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLS 74 + N+P +A + G+I+ +++ + + ++ +D A++ ++ Sbjct: 289 KASPTKNAPEIAVLYAEGEIKAQTPGNFYDIEQSITEKMADELIKLKNNDDVKAVVFRVN 348 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGGSAY E I+R + ++K KPV+ + +AAS GY ISCA+N I+A +L GSIG+ Sbjct: 349 SPGGSAYISEQIWRQVVELKKVKPVVVSMGNVAASGGYYISCAANKIIAEPNTLTGSIGI 408 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 +P KL ++ VK++ + ++Q V+ Y F+ + Sbjct: 409 FGMFPNASGLFGKLALTTDIVKTNTFSDFGDLSRPMTESEKALIQGYVERGYQTFLSRCA 468 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 E R + + + GR+WTG +AK+ GL+D +GG E + L D + + Sbjct: 469 EGRGMTTEAVNAIGQGRVWTGEQAKERGLVDELGGIELAISTAAGLA-DLDQYSVTTVSG 527 Query: 255 PKNYWFCDLKNLSISSLLE 273 KN+ L++ L Sbjct: 528 SKNFLDEFLESQLGEVKLS 546 Score = 90.1 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 99/262 (37%), Gaps = 26/262 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPH---VARIAIRGQIEDS------------------ 50 ++ L+++T+ Y + D +P V +I + G + D+ Sbjct: 15 IILTVLISMTIGYIATVGSTPDYTPKSNTVFKIKLDGTLADNPAENPFSALMGDKENMLS 74 Query: 51 -QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 ++L+E I ++D + + + + EAI R++ K + + Sbjct: 75 LKDLLETIRIAKQNDKIAGIYIESGLLSSGSASLEAIRRSLIDFKESGKFVVAYADNFTQ 134 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS- 168 Y + ++ + ++ G+ Q + K +DK+G+ ++ K K PF Sbjct: 135 GNYFLCSVADKVFLNPQGILELTGLASQTLFYKGLMDKVGIEMQIFKVGTYKGAVEPFML 194 Query: 169 -EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA--EAKKVGLID 225 +++ + +Q + + + ++ESR I + ++ ++ + + G ID Sbjct: 195 DKLSEANREQIQSYISTIWDNIAEGIAESRGISVNDINHYANEGLFFADPVKTVECGFID 254 Query: 226 VVGGQEEVWQSLYALGVDQSIR 247 + + EV + L + Sbjct: 255 ELKYKPEVEAYVKELAGQNGEK 276 >gi|168238961|ref|ZP_02664019.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736488|ref|YP_002114312.1| protease 4 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194711990|gb|ACF91211.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288303|gb|EDY27688.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 618 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 14/268 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D +A I G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + K KPV+ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 379 VNASEVIRAELAAAKAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ L +GV V +SP+ S ++P+ QMMQ ++ Y F+ LV+++R Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L + + Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556 Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284 + +++ S ++L + I M + Sbjct: 557 LDMVMDSMTGSVRAMLPEAIQAMLPAPL 584 Score = 99.3 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 52/282 (18%), Positives = 100/282 (35%), Gaps = 40/282 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S+ E + + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90 +++ I + D S T +++ L + G+ I +A+ Sbjct: 79 ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRSITGIVLDLKNFTGADQPSMRYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ I V E + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPIFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ VS +R I + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSHWIGELWQNYLHTVSANRQISPQQLFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + DG T A L+D + +V ++L Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300 >gi|204927902|ref|ZP_03219103.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323244|gb|EDZ08440.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 618 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 14/268 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D +A I G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + K KPV+ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 379 VNASEVIRAELAAAKAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ L +GV V +SP+ S ++P+ QMMQ ++ Y F+ LV+++R Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L + + Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556 Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284 + +++ S ++L + I M + Sbjct: 557 LDMVMDSMTGSVRAMLPEAIQAMLPAPL 584 Score = 99.7 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 51/282 (18%), Positives = 100/282 (35%), Gaps = 40/282 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S+ E + + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90 +++ I + D + T +++ L + G+ I +A+ Sbjct: 79 ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ I V E + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPIFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ VS +R I + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + DG T A L+D + +V ++L Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300 >gi|300716991|ref|YP_003741794.1| Protease IV [Erwinia billingiae Eb661] gi|299062827|emb|CAX59947.1| Protease IV [Erwinia billingiae Eb661] Length = 618 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 76/275 (27%), Positives = 118/275 (42%), Gaps = 22/275 (8%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQELIER---------IERISRDDSATALIVSLSSPGGS 79 ++A I G I D E I D A++ ++SPGGS Sbjct: 319 KDNGSTDGNIAVIMASGAIMDGDETAGSVGGDTTAMEIREARLDPKIKAIVFRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + K KPV+ + MAAS GY IS +N I+A+ ++L GSIG+ Sbjct: 379 VTASETIREELAAAKEAGKPVVVSMGGMAASGGYWISTPANYIIASPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+ QMMQ +++ Y F+ LV+ SRN Sbjct: 439 NTVENTLDSIGVHTDGVSTSPLAD-ISTTKALPPEVQQMMQMSIENGYKNFLGLVAHSRN 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L + K + Sbjct: 498 KTPEQIDQIAQGHVWTGTDAKANGLVDAMGDFDDAVAKAAELAKLKDA---KLSWYQDDP 554 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 F DL + + +P + W P Sbjct: 555 NFMDLLFSQMDVSVRAALPETLKA--------WMP 581 Score = 97.0 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 56/332 (16%), Positives = 112/332 (33%), Gaps = 47/332 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH--VARIAIRGQIEDSQ------- 51 + FV + I ++++ ++ +YF +SS P + + G + D Sbjct: 19 LNFVREFILNLFLVVLILICAGIYFQFSSSSTPAEPQKGALIVDLSGVVVDKPSVSNKLS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 ++++ I + D + T +++ L G+ + I +A+ Sbjct: 79 KIGRQLLGSSSDKLKENSLFDVVDAIRQAKGDANITGMVLDLRDFAGADQPSLQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ I + + A Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKQIYATGDSYSQAQYYLASFANKIYLSPQGTVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + ++ VS +R I ++ Sbjct: 199 SSHVFRVGTYKSAVEPFLRDDMSPAARDADSRWIGELWQNYLNTVSANRQITPEQLFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNP 254 L T AK L+D + + V Q L D I D+ Sbjct: 259 QGVLDGLQKVGGDTAVYAKDSKLVDELASRSLVDQQLTKIFGWDKQAKDYKGTSIYDYQV 318 Query: 255 PKN-YWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 N ++ + S + D Sbjct: 319 KDNGSTDGNIAVIMASGAIMDGDETAGSVGGD 350 >gi|293395880|ref|ZP_06640162.1| signal peptide peptidase SppA [Serratia odorifera DSM 4582] gi|291421817|gb|EFE95064.1| signal peptide peptidase SppA [Serratia odorifera DSM 4582] Length = 622 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 70/272 (25%), Positives = 120/272 (44%), Gaps = 18/272 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSA 80 D +A + G I D ++ + D A+++ ++SPGGS Sbjct: 324 PAADQGGQIAVVFANGAIMDGPQTPGTVGGDTTAAQLRQARLDPKIKAVVLRVNSPGGSV 383 Query: 81 YAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A E I + V+ KPV+ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 384 SASEVIRSELAAVRAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVIN 443 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + LD +GV V +SP+ + P+ QMMQ +++ Y F+ LV+ +R + Sbjct: 444 TYQDTLDSVGVHTDGVATSPLADLAVT-KALPPEFAQMMQLNIENGYKNFIDLVAGARKM 502 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS--IRKIKDWNPPKN 257 ++ ++ G +WTG +AK GL+D +G ++ Q L + + D + Sbjct: 503 SPEQVDKIAQGHVWTGGDAKNNGLVDQLGDFDDAVQKAAELAKLKQWHLNWFVD-----S 557 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 D+ + +P Q+ + A Sbjct: 558 PSLADMVLSQFGVSIHAMLPAALQSMLPAPLA 589 Score = 83.1 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 47/299 (15%), Positives = 105/299 (35%), Gaps = 45/299 (15%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51 + F+ + I +++L ++ +YFS+ +P A + + G + D Sbjct: 24 LNFIRELILNLFLLLLILVGVGIYFSFQGSAPAETPRGALLVNLSGVVVDQPSMKNRLLQ 83 Query: 52 -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91 ++++ I D + T +++ L+ G+ + I +A++ Sbjct: 84 RSREFLGASASELQENSLFDVVDSIRSAKDDKNITGMVLQLNDFAGADQPSLQYIGKALR 143 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + ++ I + + Y ++ +N I + V G Y K LDKL V+ Sbjct: 144 EFRDSGKPIYAIGDSYNQTQYYLASFANKIYLSPQGNVDLHGFATNNLYYKSLLDKLKVT 203 Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------ 203 + K+ P +++P A + + + + ++ V+ +R I + Sbjct: 204 TNIFRVGTYKSAVEPMIRDDMSPAAREADSRWIGNLWQNYLTTVAANRQITTAQLFPGAA 263 Query: 204 --TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNP 254 L T A L+D + + + L D + I D+ P Sbjct: 264 GVLSGLQAAGGDTAKYALDGKLVDELASRTVMENQLIKTFGWDKQNNDFNAVSIYDYQP 322 >gi|16330327|ref|NP_441055.1| protease IV [Synechocystis sp. PCC 6803] gi|2499882|sp|P73689|SPPA_SYNY3 RecName: Full=Protease 4; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV homolog; AltName: Full=Signal peptide peptidase gi|1652816|dbj|BAA17735.1| protease IV [Synechocystis sp. PCC 6803] Length = 610 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 77/276 (27%), Positives = 128/276 (46%), Gaps = 11/276 (3%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQELIERI---------ERISRDDSATALIVSLSSPG 77 W + D P +A + + G I + + E I I +DD A+++ ++SPG Sbjct: 310 WETENHDQDPKIAIVYLEGSIVNGRGTWENIGGDRYGELLRTIRQDDDIKAVVLRINSPG 369 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 GSA A + I+R ++ ++ +KPVI + +AAS GY I+ A IVA ++ GSIGV Sbjct: 370 GSASAADIIWREVELLQAQKPVIISMGNVAASGGYWIATAGEKIVAQPNTVTGSIGVFSI 429 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 V+ D+LG++ V + + S + + Q VD Y F+ V +R Sbjct: 430 LFNVENLGDRLGLNWDEVATGELANVGSSIKPKTELELAIFQRSVDQVYEIFLDKVGRAR 489 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 N+ ++ GR+WTG A+KVGL+D +GG + A ++K++ P+ Sbjct: 490 NLSPTALDSVAQGRVWTGLAAQKVGLVDQLGGLQTAVNLAAAQAELGEQWQVKEYPTPRG 549 Query: 258 YWFCDLKNL--SISSLLEDTIPLMKQTKVQGLWAVW 291 NL ++ +P +T Q L W Sbjct: 550 LNSLLWNNLIHGLTETNSVVLPPFLRTNWQQLEREW 585 Score = 78.5 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 90/226 (39%), Gaps = 7/226 (3%) Query: 46 QIEDSQELIERIERISRDDSATALIV---SLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102 +I + ++ IE+ + DD AL++ + G A E I+ ++ K ++ Sbjct: 78 EILPLRTVVNAIEKAAEDDRIVALLIDGRRSNQVDGYANLSEVQQALIKFKQSGKKIVAY 137 Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 + YL + A + I+ V G+ Q + L K G+ +++++ K Sbjct: 138 GLNYSELGYYLAATA-DTILINPMGGVEINGLGAQPIFFTGALAKAGIGVQTLRVGSYKG 196 Query: 163 EPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL-SDGRIWTGAEAK 219 P+ ++P+ Q Q +++ + ++ V+ +R++ + + SD + A Sbjct: 197 AVEPYTRENLSPENRQQQQLLLNQIWQIYLTSVANNRSLTVPQLQAIASDQGLLFADIAL 256 Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 + L+D V +EV L GV + + + + Sbjct: 257 REKLVDKVTYWDEVLAELKQAGVWINDPEKIEEQEEDKEFRKISLA 302 >gi|289192538|ref|YP_003458479.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus sp. FS406-22] gi|288938988|gb|ADC69743.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus sp. FS406-22] Length = 314 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 72/264 (27%), Positives = 141/264 (53%), Gaps = 16/264 (6%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE---------------DSQELIERIER 59 + + L V+ S + +A++ + +I D++ I +++ Sbjct: 19 VGVSILLVISLSGENIDLFGGEKIAKVYLCNEIYFDYNQDDSLFPETKKDARYYINLLDK 78 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119 + +DDS +++ ++SPGG A E + R ++++ +KPV+ V + AS Y++S ++ Sbjct: 79 LEKDDSVKGVLLIVNSPGGEVIASEKLARKVEELAKKKPVVVYVEGLDASGAYMVSAPAD 138 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 IVA + S+VGSIGV + + KLG+++ ++K+ K SPF + + + +Q Sbjct: 139 YIVAEKHSIVGSIGVRMDLIHYYGLMKKLGINVTTIKAGKYKDIGSPFRPMTKEEKEYLQ 198 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 +++ +Y FV+ V+E R++ + TL ++DG+I+TG +AKKVGL+D VG +E + L Sbjct: 199 KMINETYMDFVKWVAEHRHLSINYTLKIADGKIYTGEDAKKVGLVDEVGTEETALKKLEE 258 Query: 240 LGVDQSIRKIKDWNPPKNYWFCDL 263 L + +I ++ +N L Sbjct: 259 LANVSN-PEIVEYGLEENRGLFGL 281 >gi|15668832|ref|NP_247635.1| protease IV SppA [Methanocaldococcus jannaschii DSM 2661] gi|3915936|sp|Q58067|Y651_METJA RecName: Full=Putative protease MJ0651 gi|2826302|gb|AAB98642.1| protease IV (sppA) [Methanocaldococcus jannaschii DSM 2661] Length = 311 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 142/280 (50%), Gaps = 17/280 (6%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIE---------------DSQELIERIERISRD 63 L V+ S + +A++ + +I D++ I ++ + +D Sbjct: 23 ILLVMSLSGENVDLFGGEKIAKVYLCNEIYFDYNQGDGIFPQQKKDARYYINLLDDLEKD 82 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 DS +++ ++SPGG A E + R ++++ +KPV+ V + AS Y++S ++ IVA Sbjct: 83 DSVKGVLLVVNSPGGEVIASEKLARKVEELAKKKPVVVYVEGLDASGAYMVSAPADYIVA 142 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 + S+VGSIGV + + KLG+++ ++K+ K SPF + + + +Q +++ Sbjct: 143 EKHSIVGSIGVRMDLMHYYGLMKKLGINVTTIKAGKYKDIGSPFRPMTKEEKEYLQKMIN 202 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 +Y FV+ V+E R++ + TL ++DG+I++G +AKKVGL+D VG +E+ + L L Sbjct: 203 ETYMDFVKWVAEHRHLSINYTLKIADGKIYSGEDAKKVGLVDEVGTEEDALKKLEQLANV 262 Query: 244 QSIRKIKDWNPPKNYWFCDL--KNLSISSLLEDTIPLMKQ 281 + ++ F I + + + M++ Sbjct: 263 SNPEIVEYGLEENKGLFGLTYYLGYGIGKGIGEVLYGMEK 302 >gi|168263890|ref|ZP_02685863.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205347569|gb|EDZ34200.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 618 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 73/268 (27%), Positives = 122/268 (45%), Gaps = 14/268 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D +A I G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + K KPV+ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 379 VNASEVIRAELAAAKAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ L +GV V +SP+ S ++P+ QMMQ ++ Y F+ LV+++R Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L + + Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556 Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284 + +++ S ++L +TI M + Sbjct: 557 LDMVMDSMTGSVRAMLPETIQAMLPAPL 584 Score = 100 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S+ E + + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90 +++ I + D + T +++ L + G+ I +A+ Sbjct: 79 ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ VS +R I + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + DG T A L+D + +V ++L Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300 >gi|262278137|ref|ZP_06055922.1| periplasmic serine protease [Acinetobacter calcoaceticus RUH2202] gi|262258488|gb|EEY77221.1| periplasmic serine protease [Acinetobacter calcoaceticus RUH2202] Length = 338 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 128/295 (43%), Gaps = 14/295 (4%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQI-------EDSQELI 54 K + Y++ +V + + S V +S H+A + I G I +S++ Sbjct: 45 FFKTLTFIYLLFIIVLMGKGCSTSKEGSAVSSSSAHLAVVDIIGTIDASSNQSVNSEDTN 104 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAG 111 + ++R ++ A+ ++++SPGGS + I++ I+ + K V + +M AS Sbjct: 105 KALKRAFEASNSKAVALNINSPGGSPVQSDEIWQEIRYLKKQHPDKKVYAVIGDMGASGA 164 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I+ +SLVGSIGV+ + KLG+ +++ + K S ++ Sbjct: 165 YYIASAADEIIVNPSSLVGSIGVIMPNYGISGLAQKLGIEDRTLTAGTNKDILSMTKPID 224 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 P Q +Q V+D+ + F+ V E R + G WTG +A ++G+ D G Sbjct: 225 PVQKQHIQSVLDNVHTHFITAVKEGRGKRLKSNDPAIFSGLFWTGDQAIQLGVADRSGNI 284 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 + + L LG ++ +S + + + K+Q Sbjct: 285 TSLMREL-NLGNKVDYTIERNPLESILGRMGAQLGQGVSESIAQEVQTSQSAKLQ 338 >gi|315126527|ref|YP_004068530.1| protease IV, a signal peptide peptidase [Pseudoalteromonas sp. SM9913] gi|315015041|gb|ADT68379.1| protease IV, a signal peptide peptidase [Pseudoalteromonas sp. SM9913] Length = 621 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 69/277 (24%), Positives = 136/277 (49%), Gaps = 15/277 (5%) Query: 18 VTLTVVYFSWSSHVEDNSP---HVARIAIRGQIEDSQ---------ELIERIERISRDDS 65 V+ +E ++P VA + +G I D + + + DD Sbjct: 302 VSFGEYLSLVKPPIEFDNPMTEKVAVVVAKGTIVDGERRAGEIGGDSTAALLRKARLDDK 361 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAA 124 A+++ + S GGS +A E I + +K KPVI + +AAS GY I+ A+N I AA Sbjct: 362 VKAVVLRIDSGGGSMFASEVIRAEVLALKAAGKPVIASMSSVAASGGYWIASAANEIWAA 421 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 +++ GSIGV + + L K+GV V ++ + S +N K +++Q V+ Sbjct: 422 PSTITGSIGVFGTFMTFEDTLAKIGVYSDGVATTELAG-FSITRPLNEKMAKVIQMSVEE 480 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 +Y F+ +V+E+RN+ ++ ++ GR+W ++A+++GL+D +G +++ ++ L Sbjct: 481 AYGRFLDVVAEARNMTPEQVDKIAQGRVWIASQAQELGLVDKLGNKQDAIKAAAELAKL- 539 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 + +K + L+++ S+ ++ + L Q Sbjct: 540 NYYDVKTIKQSLSPQEKMLQDIFGSAAVKSVLGLETQ 576 Score = 95.1 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 46/318 (14%), Positives = 100/318 (31%), Gaps = 37/318 (11%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------- 50 + F + I + +V V S + V R+ + G I + Sbjct: 13 INFSRRLILNVLFLFLVVIFIVSVSSDGDKIIVEEGSVLRLNLNGPIVEEKTYIDPVEAA 72 Query: 51 ----------------QELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93 +++E I ++D +A+++ L P + I +A++ Sbjct: 73 INDATASADSPSEILLDDVVEVINEAAQDSRISAILLDLQEMPKAHLNKLKQITQALETF 132 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + A Y I+ ++ I V G Y K L+KL V+ Sbjct: 133 KATGKKVIASGYYYTQAQYYIAAHADEIAMHPYGSVLIEGYGMYPLYFKDALEKLEVTQH 192 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-- 209 + K+ PF ++++ A + + + + ++ + + VS R D Sbjct: 193 IFRVGTFKSAVEPFIRNDMSEAAKEANRVWLGALWNEYKQDVSAVRPFDESNFDETMDVY 252 Query: 210 ------GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 G A +D + +++ Q L L + K Y Sbjct: 253 LAKMQAANGDAGKYALDNQWVDSLKTNQQIRQQLIELVGENEDGKTFKQVSFGEYLSLVK 312 Query: 264 KNLSISSLLEDTIPLMKQ 281 + + + + + ++ Sbjct: 313 PPIEFDNPMTEKVAVVVA 330 >gi|270262164|ref|ZP_06190436.1| protease 4 [Serratia odorifera 4Rx13] gi|270044040|gb|EFA17132.1| protease 4 [Serratia odorifera 4Rx13] Length = 618 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 67/271 (24%), Positives = 120/271 (44%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 D +A + G I D + + D S A++ ++SPGGS Sbjct: 319 KPTPDQGGKIAVVFANGAIMDGPQTPGAVGGDTTAAELRQARLDPSIKAVVFRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + V+ KPV+ + MAAS GY +S ++ I+A+ ++L GSIG+ Sbjct: 379 VSASEVIRSELAAVRAAGKPVVVSMGGMAASGGYWVSTPADYIIASPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + LD +GV V +SP+ + P+ QMMQ +++ Y F+ LV++SR Sbjct: 439 NTYEQTLDSIGVHTDGVATSPLADLAVT-KALPPEFSQMMQLNIENGYKNFIDLVAKSRK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + + ++ G +W G++AK GL+D +G ++ + L ++ + + Sbjct: 498 MTPQQVDQIAQGHVWLGSDAKANGLVDQLGDFDDAVKKAAELAKL-KQWQLNWFVDTPSL 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 L +S + +P Q+ + A Sbjct: 557 TDMVLSQFGVS--IHAMLPAAIQSMLPAPLA 585 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 84/237 (35%), Gaps = 17/237 (7%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASA 110 ++++ I + D + T +++ L+ G+ + I +A+++ ++ I + + Sbjct: 99 DVVDSIRKAKDDKNITGMVLQLNDFAGADQPSLQYIGKALREFRDSGKPIFAIGDSYNQT 158 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FS 168 Y ++ +N + + V G Y K L+KL V+ + K+ P Sbjct: 159 QYYLASYANKVYLSPQGAVDLHGFATNNLYYKSLLEKLKVTTNIFRVGTYKSAVEPLIRD 218 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKK 220 +++P A + + + ++ V+ +R I + L T A Sbjct: 219 DMSPAAREADSRWIGGLWQNYLDTVAANRQITPQQLFPGAAGVLSGLQAAGGDTAKFALD 278 Query: 221 VGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 L+D + + + L D + I D+ P + ++ Sbjct: 279 SKLVDELASRTVIENQLIKTFGWDKQANDFNATSIYDYQPKPTPDQGGKIAVVFANG 335 >gi|147868|gb|AAA24648.1| protease IV [Escherichia coli] Length = 618 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 71/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGG+ Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGT 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A MMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQLMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP ++ Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|257454429|ref|ZP_05619691.1| signal peptide peptidase SppA, 36K type [Enhydrobacter aerosaccus SK60] gi|257448195|gb|EEV23176.1| signal peptide peptidase SppA, 36K type [Enhydrobacter aerosaccus SK60] Length = 360 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 69/266 (25%), Positives = 121/266 (45%), Gaps = 21/266 (7%) Query: 4 VLKKIKTRYVMLSLVTLTVVYF----SWSSHVEDNSPHVARIAIRGQI-----EDSQELI 54 K I YV+L + S S ++ + PH+A + ++G I +SQ + Sbjct: 61 FFKLITLGYVLLFGAVVAKGCSGSAKSGMSDIDMSKPHLAVVDVKGVISSDNEANSQAVG 120 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFR---AIQKVKNRKPVITEVHEMAASAG 111 E + +D A A+ + ++SPGGS + I++ ++K K + + +M AS Sbjct: 121 EALTEAFDNDQAQAVALRINSPGGSPVQSDEIWQTMTELRKAHPNKKLYAVIEDMGASGA 180 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I +SLVGSIGV+ V+ +DKLGV ++ + K S ++ Sbjct: 181 YYIASAADEIWVNPSSLVGSIGVIMPSYNVQGLMDKLGVKDGTMTAGAHKDILSMSRPLS 240 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGG 229 Q +Q V+D+++ F+ V + R L G W+G +A +GL D GG Sbjct: 241 EFERQHVQGVLDNTHAHFINAVKQGRGNRLKNPDANQLFSGLFWSGEQAINLGLADKKGG 300 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPP 255 + L + + ++NP Sbjct: 301 ISTLESQL-------KLDNVVEYNPE 319 >gi|257869238|ref|ZP_05648891.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257803402|gb|EEV32224.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 341 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 57/268 (21%), Positives = 119/268 (44%), Gaps = 17/268 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPG 77 D++ + R+ + G I ++ +E + D + ++ ++SPG Sbjct: 55 AGDSNNRILRLTLEGTIANTSGGGLFSTEGYDHQLFLEELRAAQEDPTIKGILFEVNSPG 114 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA-SNIIVAAETSLVGSIGVLF 136 G Y I R ++K+K + + A++G A ++ I A + ++ GSIGV+ Sbjct: 115 GGVYESAEIAREMKKIKEIGIPVYVSMKNTAASGGYYVSAGADKIFATDETVTGSIGVIM 174 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 LDKLG+ + KS +K S + +++Q VD++Y FV +V+E Sbjct: 175 SGLNYSGLLDKLGIEDSTYKSGALKDMGSSTRAATDEDKKVLQTYVDNAYGRFVSIVAEG 234 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R + + ++DGRI+ G +A + GL+D +G E+ + +L A + +I ++ Sbjct: 235 RGMSEEAVRKIADGRIYDGQQAVENGLVDEIGFPEDAFAALEADQGLEDA-EIFEYGVGS 293 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + ++ + + +++ Sbjct: 294 TGFASTWLGSKLAEF--QGLKASESSRL 319 >gi|255012266|ref|ZP_05284392.1| protease IV [Bacteroides sp. 2_1_7] Length = 588 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 68/259 (26%), Positives = 122/259 (47%), Gaps = 14/259 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLS 74 + N+P +A + G+I+ +++ + + ++ +D A++ ++ Sbjct: 295 KASSTKNAPEIAVLYAEGEIKAQTPGSLYDIEQSITEKMADELIKLKNNDDVKAVVFRVN 354 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGGSAY E I+R + ++K KPV+ + +AAS GY ISCA+N I+A +L GSIG+ Sbjct: 355 SPGGSAYISEQIWRQVVELKKVKPVVVSMGNVAASGGYYISCAANKIIAEPNTLTGSIGI 414 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 +P KL ++ VK++ + ++Q V+ Y F+ + Sbjct: 415 FGMFPNASGLFGKLALTTDIVKTNTFSDLGDLSRPMTESEKALIQGYVERGYQTFLSRCA 474 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 E R + + + GR+WTG +AK+ GL+D +GG E + L D + + Sbjct: 475 EGRGMTTEAVNAIGQGRVWTGEQAKERGLVDELGGIELAISTAAGLA-DLDQYSVTTVSG 533 Query: 255 PKNYWFCDLKNLSISSLLE 273 KN+ L++ L Sbjct: 534 SKNFLDEFLESQLGEVKLS 552 Score = 90.1 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 99/262 (37%), Gaps = 26/262 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPH---VARIAIRGQIEDS------------------ 50 ++ L+++T+ Y + D +P V +I + G + D+ Sbjct: 21 IILTVLISMTIGYIATVGSTPDYTPKSNTVFKIKLDGTLADNPAENPFSALMGDKENMLS 80 Query: 51 -QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 ++L+E I ++D + + + + EAI R++ K + + Sbjct: 81 LKDLLETIRIAKQNDKIAGIYIESGLLSSGSASLEAIRRSLIDFKESGKFVVAYADNFTQ 140 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS- 168 Y + ++ + ++ G+ Q + K +DK+G+ ++ K K PF Sbjct: 141 GNYFLCSVADKVFLNPQGILELTGLASQTLFYKGLMDKVGIEMQIFKVGTYKGAVEPFML 200 Query: 169 -EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA--EAKKVGLID 225 +++ + +Q + + + ++ESR I + ++ ++ + + G ID Sbjct: 201 DKLSEANREQIQSYISTIWDNITEGIAESRGISVNDINHYANEGLFFADPVKTVECGFID 260 Query: 226 VVGGQEEVWQSLYALGVDQSIR 247 + + EV + L + Sbjct: 261 ELKYKPEVEAYVKELAGQNGEK 282 >gi|169630869|ref|YP_001704518.1| protease IV SppA [Mycobacterium abscessus ATCC 19977] gi|169242836|emb|CAM63864.1| Possible protease IV SppA (endopeptidase IV) [Mycobacterium abscessus] Length = 583 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 64/273 (23%), Positives = 124/273 (45%), Gaps = 21/273 (7%) Query: 34 NSPHVARIAIRGQIEDSQE---------------LIERIERISRDDSATALIVSLSSPGG 78 + P + + + G I + + E + DDS A+++ + SPGG Sbjct: 289 SRPAIGVVTLAGPIVSGRSGPRLFPPGPASGGDVIAEALRDAVADDSVAAIVLRVDSPGG 348 Query: 79 SAYAGEAIFRAI-QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 S E I+R + + + KPV+ + +A S GY ++ +++ I+A ++ GSIGVL Sbjct: 349 SVNGSETIWREVVRAREAGKPVVVSMGSVAGSGGYYVAMSADAIIANPGTVTGSIGVLTG 408 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 K +KLGV S++++ S + +++ +D Y FV+ V++ R Sbjct: 409 KFITKGLKEKLGVGSDSLRTNANADAWSSNEPFTDEQRDLVEAEIDMHYEDFVQRVADGR 468 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 N+ D ++ GRIW+G +A + GL+D +GG E L + ++ N P + Sbjct: 469 NLTVDAVKAVAQGRIWSGKDALEHGLVDELGGFREAVAKAKQLADIGADDNVRIANFPSS 528 Query: 258 YWFCDLKNL-----SISSLLEDTIPLMKQTKVQ 285 L+ + +++ + + + Q V+ Sbjct: 529 PLSSLLRQRSSSQPAAAAVTDAVLGRVAQLAVE 561 Score = 92.8 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 79/202 (39%), Gaps = 2/202 (0%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + I I R D LI + P +A A + + AI+ KP + + Sbjct: 60 SLRHTIAAIHRAIEDPRVAGLIARVQIPPAAAGAVQELRAAIEAFSAVKPSLAWSETYPS 119 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 + Y ++ A + + VG IG + +++ LDK GV + + K+ + F+ Sbjct: 120 TLAYYLASAFGEVWMQPSGTVGLIGFAAKGTFLRGALDKAGVEAQFLTRGQYKSAANLFT 179 Query: 169 E--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 E + +++S V+ SR + + L+D +A GL+D Sbjct: 180 EDGYTDAQREADGRLLESLSEQVRDSVAVSRKLDPAEVDALADRAPLRRTDAVAGGLVDR 239 Query: 227 VGGQEEVWQSLYALGVDQSIRK 248 +G ++E + + L Q R Sbjct: 240 IGYRDEAYARIGELIGLQDDRD 261 >gi|91223668|ref|ZP_01258933.1| protease IV [Vibrio alginolyticus 12G01] gi|91191754|gb|EAS78018.1| protease IV [Vibrio alginolyticus 12G01] Length = 616 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 66/274 (24%), Positives = 123/274 (44%), Gaps = 13/274 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 + + +A + G I D + + + D+ A Sbjct: 307 IGYYDYLATIRPDYTLPQHDIAVVLASGAIMDGQQPRGTVGGDTVASLLRQARNDEKVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I ++ + + KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEVEALKQAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + KLG++ V +SP + + ++ A Q+ Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGFSKLGINTDGVGTSPF-SGDGITTGLSEGASQVFQLGIEHGYK 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-- 245 F+ LV E+R++ ++ ++ GR+WTG +A GL+D +G ++ + L Sbjct: 486 RFISLVGENRDMSLEEVDKVAQGRVWTGQDALSFGLVDQMGDFDDAVELAAKLANVTDYG 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 I +++ P + + SL D L+ Sbjct: 546 IYWVEEPLSPTELFLQEFMKQVKVSLGIDATSLL 579 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 91/284 (32%), Gaps = 37/284 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + F+ + +L + + ++ + + G I + + Sbjct: 19 ITFIRLALANLIFLLMIAVFYFAFTYTGDGQPVVEKESALVMNLSGPIVEQRRYVNPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93 ++++ I D + L+++L P + I +A+ + Sbjct: 79 FAGSLLGNELPKENVLFDIVDTIRYAKDDPKVSGLVLALRDMPETNLTKLRYIAKALNEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ + A V G Y K L+KL VS Sbjct: 139 KASGKPVYAVGDFYNQSQYYLASYADKVYLAPDGGVLIKGYSAYSMYYKTLLEKLDVSTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF +++ A + V + FV V+ +RNI D Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESATRWVTQLWSAFVDDVTTNRNIDAKVLNPTMDEL 258 Query: 212 I--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 I A K+GL+D + ++++ Sbjct: 259 INEMKSVNGDIAQLAVKLGLVDELATRQDIRTLFAKQFGSDGKD 302 >gi|153833866|ref|ZP_01986533.1| signal peptide peptidase SppA, 67K type [Vibrio harveyi HY01] gi|148869808|gb|EDL68782.1| signal peptide peptidase SppA, 67K type [Vibrio harveyi HY01] Length = 616 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 68/274 (24%), Positives = 125/274 (45%), Gaps = 13/274 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 + + ++ + +A + G I D + + + DD A Sbjct: 307 IGYYDYLATMRPNLTPSENDIAVVVASGAIMDGQQPRGTVGGDTVASLLRQARNDDKVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I ++ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEVEALKEAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + KLG+S V +SP + + ++ A Q Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGFTKLGISTDGVGTSPF-SGDGITTGLSDGASQAFQLGIEHGYK 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F+ LV +R++ D+ ++ GR+WTG +A GL+D +G ++ + L + Sbjct: 486 RFISLVGSNRDMSLDEVDKVAQGRVWTGQDAMSFGLVDQMGDFDDAVKLAAKLADVENYE 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 + +++ P + + N SL D + Sbjct: 546 LYWVEEPLSPTEQFVQEFMNQVKVSLGIDATSFL 579 Score = 94.3 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 92/284 (32%), Gaps = 37/284 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + FV + ++ + + ++ + + G I + + Sbjct: 19 ITFVRLALANLIFLVMIAVFYFAFTYTGEGQPTVEKESALVMNLSGPIVEQRRYVNPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93 ++++ I D + L+++L P + I +A+ + Sbjct: 79 IAGSVLGNEMPKENVLFDIVDTIRYAKDDPKVSGLVLALRDMPETNLTKLRYIAKALNEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ + A V G Y K L+KL VS Sbjct: 139 KTSGKPVYAVGDFYNQSQYYLASYADKVFLAPDGGVLIKGYSSYSMYYKTLLEKLDVSTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF +++ A + + + FV V+ +RNI D Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESATRWITQLWSAFVDDVATNRNIDTKALNPTMDEL 258 Query: 212 I--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 + A K+GL+D + +++V + Sbjct: 259 LAEMKSVDGDLAQLAVKMGLVDELATRQDVRKLFAKEFGSDGKD 302 >gi|330446548|ref|ZP_08310200.1| signal peptide peptidase SppA, 67K type [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490739|dbj|GAA04697.1| signal peptide peptidase SppA, 67K type [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 587 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 67/262 (25%), Positives = 116/262 (44%), Gaps = 12/262 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 ++ E + VA + G I D + + + D + Sbjct: 278 ISYYDYLSMLVDDQEPSKNKVAVVVASGAIVDGKSSQGTAGGDTIAGLLRKARFDKDVKS 337 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +I+ + SPGGSA+A E I + +K KPV+ + +AAS GY IS +++ I+A T+ Sbjct: 338 VILRVDSPGGSAFASEVIRNEVDALKEAGKPVVVSMSSVAASGGYWISSSASKIIAQPTT 397 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 + GSIG+ + L+KLGV V ++P + ++ Q VD+ Y Sbjct: 398 ITGSIGIFAILTTFEKSLEKLGVYSDGVGTTPFAGVGVT-RALPENIAKIFQMGVDNGYQ 456 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F+ LVS+ R++ ++ ++ GR+WTG +AK GL+D +G + AL Sbjct: 457 RFIGLVSKYRHMSLEQADKIAQGRVWTGKDAKARGLVDELGDFDTAITEAVALAKV-DNY 515 Query: 248 KIKDWNPPKNYWFCDLKNLSIS 269 ++ P + K +S Sbjct: 516 QLVWMQQPLSPIQQFFKEMSGE 537 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 43/314 (13%), Positives = 108/314 (34%), Gaps = 39/314 (12%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------------- 51 ++ + + + S + + + G I + + Sbjct: 2 IFLVIVGAIIFAFNSDDESADKPEASALMLDLSGPIVEQKNYDNPLDGIVSNVMGQPPVE 61 Query: 52 -----ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 +++E I + D S T L+++ + P S I +AIQ+ K + Sbjct: 62 QNVLFDIVEAIRTAATDSSITGLVLNLKNMPETSLTKLRYIAKAIQEFKASGKPVYAYGG 121 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 + + Y ++ ++ + + V G Y K L+KL V+ + K+ Sbjct: 122 HYSQSQYYLASYADKVFMSPDGGVMLTGYGTYTLYYKSLLEKLDVTTHVFRVGTYKSFVE 181 Query: 166 PF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTG 215 P+ ++ A + +D + + V+++RNI L+ + Sbjct: 182 PYIRDGMSAAAKEANTVWLDQLWGAYTSDVAKNRNIDAATLTPETDNFIEQLTAVKGDFA 241 Query: 216 AEAKKVGLIDVVGG---QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 +KK+GL+D + ++ + + S ++I ++ + + +++ Sbjct: 242 QLSKKMGLVDELVTRPQLSQILIKAFGDNGEHSFKQISYYDYLSMLVDDQEPSKNKVAVV 301 Query: 273 EDTIPLMKQTKVQG 286 + ++ QG Sbjct: 302 VASGAIVDGKSSQG 315 >gi|156975314|ref|YP_001446221.1| protease [Vibrio harveyi ATCC BAA-1116] gi|156526908|gb|ABU71994.1| hypothetical protein VIBHAR_03044 [Vibrio harveyi ATCC BAA-1116] Length = 616 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 68/274 (24%), Positives = 125/274 (45%), Gaps = 13/274 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 + + ++ + +A + G I D + + + DD A Sbjct: 307 IGYYDYLATMRPNLAPSENDIAVVVASGAIMDGQQPRGTVGGDTVASLLRQARNDDKVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I ++ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEVEALKEAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + KLG+S V +SP + + ++ A Q Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGFTKLGISTDGVGTSPF-SGDGITTGLSDGASQAFQLGIEHGYK 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F+ LV +R++ D+ ++ GR+WTG +A GL+D +G ++ + L + Sbjct: 486 RFISLVGSNRDMSLDEVDKVAQGRVWTGQDAMSFGLVDQMGDFDDAVKLAAKLADVENYE 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 + +++ P + + N SL D + Sbjct: 546 LYWVEEPLSPTEQFVQEFMNQVKVSLGIDATSFL 579 Score = 94.3 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 93/284 (32%), Gaps = 37/284 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + FV + ++ + + ++ S + + G I + + Sbjct: 19 ITFVRLALANLIFLVMIAVFYFAFTYTGESQPTVEKESALVMNLSGPIVEQRRYVNPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93 ++++ I D + L+++L P + I +A+ + Sbjct: 79 IAGSVLGNEMPKENVLFDIVDTIRYAKDDPKVSGLVLALRDMPETNLTKLRYIAKALNEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ + A V G Y K L+KL VS Sbjct: 139 KTSGKPVYAVGDFYNQSQYYLASYADKVFLAPDGGVLIKGYSSYSMYYKTLLEKLDVSTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF +++ A + + + FV V+ +RNI D Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESATRWITQLWSAFVDDVATNRNIDAKALNPTMDEL 258 Query: 212 I--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 + A K+GL+D + +++V + Sbjct: 259 LAEMKSVDGDLAQLAVKMGLVDELATRQDVRKLFAKEFGSDGKD 302 >gi|212692949|ref|ZP_03301077.1| hypothetical protein BACDOR_02450 [Bacteroides dorei DSM 17855] gi|237723560|ref|ZP_04554041.1| protease IV [Bacteroides sp. D4] gi|212664505|gb|EEB25077.1| hypothetical protein BACDOR_02450 [Bacteroides dorei DSM 17855] gi|229438111|gb|EEO48188.1| protease IV [Bacteroides dorei 5_1_36/D4] Length = 593 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 76/278 (27%), Positives = 133/278 (47%), Gaps = 19/278 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVSLSSPGG 78 + + +A G+I D+ Q++ + + ++ +D A+++ ++SPGG Sbjct: 298 PKDKSGNVIAVYYAYGEILDAPGSSTEDCIDVQKMCKGLRKLRDNDDVKAVVLRVNSPGG 357 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQ 137 SAY + I+R + ++K +KPVI + + AAS GY ISCA++ I A T+L GSIG+ Sbjct: 358 SAYGSDQIWREVVRLKEKKPVIVSMGDYAASGGYYISCAADRIFADPTTLTGSIGIFGMM 417 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKA-----EPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 Y K F + LG++ VK++ M P +N ++MQ+ V+ Y FV Sbjct: 418 YSGEKLFTETLGLNFDVVKTNKMADLGASLGPILTRPLNASEQELMQNYVNRGYKLFVSR 477 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 +E R + + +++GR+WTGA AK +GL+D +GG ++ + ++ I Sbjct: 478 CAEGRKMSTEAIEKVAEGRVWTGAMAKDLGLVDELGGIDKALNAAATQAGIENYSIIGY- 536 Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 P K F L + I + A+ Sbjct: 537 -PEKENIFASLLGNQKKHYVNSEIKEYLGSYYNSFKAL 573 Score = 110 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 100/261 (38%), Gaps = 23/261 (8%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQE 52 + +L ++TL + S + + + +G + + Sbjct: 22 FTILGIITLVGIVASSDTETVVKDNSIFVLDFKGSLSERVQENPLQQLLGEEFEAYGLDD 81 Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ I++ +D + + S S + E I A+ K I + A Y Sbjct: 82 ILASIKKAKDNDKIKGIYIQPSYLEASYASLEEIRNALLDFKESGKFIVAYADQYAQKMY 141 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEV 170 +S ++ I+ +G G Q + K + KLG+ I+ + K+ PF +E+ Sbjct: 142 YLSSVADKIIINPQGSIGWHGAGMQPVFFKNLVSKLGLEIQVFRVGTYKSAVEPFIATEM 201 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--GAEAKKVGLIDVVG 228 +P + M + ++S ++ VS+SR+IP D +D + E + GL D + Sbjct: 202 SPANREQMTECLESVWNRIQADVSDSRHIPTDTLNAYADRYMDFCQAEEYVQCGLADTLM 261 Query: 229 GQEEVWQSLYALGVDQSIRKI 249 ++EV L L K+ Sbjct: 262 YKDEVISYLKQLSGRDEDDKL 282 >gi|254423024|ref|ZP_05036742.1| signal peptide peptidase SppA, 67K type [Synechococcus sp. PCC 7335] gi|196190513|gb|EDX85477.1| signal peptide peptidase SppA, 67K type [Synechococcus sp. PCC 7335] Length = 615 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 63/271 (23%), Positives = 122/271 (45%), Gaps = 12/271 (4%) Query: 30 HVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGS 79 + ++ +A + +G I S+ L + + DD A+++ ++SPGGS Sbjct: 320 NSSEDKDAIAVVYAQGNIIVGEGSVPGAITSEGLSATLRDMREDDDIKAVVLRVNSPGGS 379 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A A E I ++ + + KP++ + + AAS GY+I+ I+A+ T++ GSIGV Sbjct: 380 ATASEIIANEVRLLADEKPLVVSMGDYAASGGYMIAAPGAKILASPTTITGSIGVYGLLL 439 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + ++ G++ VK++ + + +++ QD VD+ Y F LV+E R+I Sbjct: 440 NFQEIANENGITWDDVKTAQLAGMGTVSRPKTASELKVQQDYVDTLYTRFTSLVAEGRDI 499 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 + ++ GR+WTG EA L+D +GG + + + + P + Sbjct: 500 SMARVGQVAQGRVWTGEEAINADLVDELGGLNDAIALAAQTAKIEEFK--VEEYPRIPSF 557 Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 L + + + +P K L + Sbjct: 558 EEQLLDSLFGAEMITRLPWNKDPLTDQLLKL 588 Score = 69.6 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 77/190 (40%), Gaps = 4/190 (2%) Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 DD + + ++ G + I A++ K I Y ++ ++ + Sbjct: 100 EDDRISGIYLTGMPAEG-LATLKEIRAALKDFKTSGKPILAYSTGLKERDYYMASVADDL 158 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVNPKAVQMMQ 179 + A L+ G + ++ L K GV ++ V++ K+ PF+ + +P+ Q + Sbjct: 159 LLAPVGLLEINGFRAETQFLGNALKKYGVGVQVVRAGRYKSAVEPFTRSQSSPEEKQQTE 218 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 +V S + F+ V++ R + + +D + +A GL+D +G E+ L Sbjct: 219 VLVTSLWQDFLNTVTDEREVTPTQMQTYADEVGLIEPEQALASGLVDRLGFYTEMLSELK 278 Query: 239 ALGVDQSIRK 248 L + + Sbjct: 279 KLAGEADSSE 288 >gi|256839290|ref|ZP_05544800.1| signal peptide peptidase SppA, 67K type [Parabacteroides sp. D13] gi|256740209|gb|EEU53533.1| signal peptide peptidase SppA, 67K type [Parabacteroides sp. D13] Length = 582 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 68/259 (26%), Positives = 122/259 (47%), Gaps = 14/259 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLS 74 + N+P +A + G+I+ +++ + + ++ +D A++ ++ Sbjct: 289 KASPTKNAPEIAVLYAEGEIKAQTPGNFYDIEQSITEKMADELIKLKNNDDVKAVVFRVN 348 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGGSAY E I+R + ++K KPV+ + +AAS GY ISCA+N I+A +L GSIG+ Sbjct: 349 SPGGSAYISEQIWRQVVELKKVKPVVVSMGNVAASGGYYISCAANKIIAEPNTLTGSIGI 408 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 +P KL ++ VK++ + ++Q V+ Y F+ + Sbjct: 409 FGMFPNASGLFGKLALTTDIVKTNTFSDLGDLSRPMTESEKALIQGYVERGYQTFLSRCA 468 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 E R + + + GR+WTG +AK+ GL+D +GG E + L D + + Sbjct: 469 EGRGMTTEAVNAIGQGRVWTGEQAKERGLVDELGGIELAISTAAGLA-DLDQYSVTTVSG 527 Query: 255 PKNYWFCDLKNLSISSLLE 273 KN+ L++ L Sbjct: 528 SKNFLDEFLESQLGEVKLS 546 Score = 89.7 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 99/262 (37%), Gaps = 26/262 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPH---VARIAIRGQIEDS------------------ 50 ++ L+++T+ Y + D +P V +I + G + D+ Sbjct: 15 IILTVLISMTIGYIATVGSTPDYTPKSNTVFKIKLDGTLADNPAENPFSALMGDKENMLS 74 Query: 51 -QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 ++L+E I ++D + + + + EAI R++ K + + Sbjct: 75 LKDLLETIRIAKQNDKIAGIYIESGLLSSGSASLEAIRRSLIDFKESGKFVVAYADNFTQ 134 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS- 168 Y + ++ + ++ G+ Q + K +DK+G+ ++ K K PF Sbjct: 135 GNYFLCSVADKVFLNPQGILELTGLASQTLFYKGLMDKVGIEMQIFKVGTYKGAVEPFML 194 Query: 169 -EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA--EAKKVGLID 225 +++ + +Q + + + ++ESR I + ++ ++ + + G ID Sbjct: 195 DKLSEANREQIQSYISTIWDNITEGIAESRGISVNDINHYANEGLFFADPVKTVECGFID 254 Query: 226 VVGGQEEVWQSLYALGVDQSIR 247 + + EV + L + Sbjct: 255 ELKYKPEVEAYVKELAGQNGKK 276 >gi|237708460|ref|ZP_04538941.1| protease IV [Bacteroides sp. 9_1_42FAA] gi|229457681|gb|EEO63402.1| protease IV [Bacteroides sp. 9_1_42FAA] Length = 593 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 76/278 (27%), Positives = 133/278 (47%), Gaps = 19/278 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVSLSSPGG 78 + + +A G+I D+ Q++ + + ++ +D A+++ ++SPGG Sbjct: 298 PKDKSGNVIAVYYAYGEILDAPGSSTEDCIDVQKMCKGLRKLRDNDDVKAVVLRVNSPGG 357 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQ 137 SAY + I+R + ++K +KPVI + + AAS GY ISCA++ I A T+L GSIG+ Sbjct: 358 SAYGSDQIWREVVRLKEKKPVIVSMGDYAASGGYYISCAADRIFADPTTLTGSIGIFGMM 417 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKA-----EPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 Y K F + LG++ VK++ M P +N ++MQ+ V+ Y FV Sbjct: 418 YSGEKLFTETLGLNFDVVKTNKMADLGASLGPILTRPLNASEQELMQNYVNRGYKLFVSR 477 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 +E R + + +++GR+WTGA AK +GL+D +GG ++ + ++ I Sbjct: 478 CAEGRKMSTEAIEKVAEGRVWTGAMAKDLGLVDELGGIDKALNAAATQAGIENYSIIGY- 536 Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 P K F L + I + A+ Sbjct: 537 -PEKENIFASLLGNQKKHYVNSEIKEYLGSYYNSFKAL 573 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 100/261 (38%), Gaps = 23/261 (8%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQE 52 + +L ++TL + S + + + +G + + Sbjct: 22 FTILGIITLVSIVASSDTETVVKDNSIFVLDFKGSLSERVQENPLQQLLGEEFEAYGLDD 81 Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ I++ +D + + S + E I A+ K I + A Y Sbjct: 82 ILASIKKAKDNDKIKGIYIQPSYLEAPYASLEEIRNALLDFKESGKFIVAYADQYAQKMY 141 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEV 170 +S ++ I+ +G G Q + K + KLG+ I+ + K+ PF +E+ Sbjct: 142 YLSSVADKIIINPQGSIGWHGAGMQPVFFKNLVSKLGLEIQVFRVGTYKSAVEPFIATEM 201 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--GAEAKKVGLIDVVG 228 +P + M + ++S +H + VS+SR+IP D +D + E + GL D + Sbjct: 202 SPANREQMTECLESVWHRILADVSDSRHIPTDTLNAYADRYMDFCQAEEYVQCGLADTLM 261 Query: 229 GQEEVWQSLYALGVDQSIRKI 249 ++EV L L K+ Sbjct: 262 YKDEVISYLKQLSGRDEDDKL 282 >gi|193215273|ref|YP_001996472.1| signal peptide peptidase SppA, 67K type [Chloroherpeton thalassium ATCC 35110] gi|193088750|gb|ACF14025.1| signal peptide peptidase SppA, 67K type [Chloroherpeton thalassium ATCC 35110] Length = 605 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 73/269 (27%), Positives = 130/269 (48%), Gaps = 14/269 (5%) Query: 33 DNSPHVARIAIRGQI------------EDSQELIERIERISRDDSATALIVSLSSPGGSA 80 D +A I + G I + L++ IE + +D+S A+I+ + SPGGS Sbjct: 294 DGGEKIAVINLTGVIEGEMSSASSDGKGGTAALLQSIEAVGKDESIKAMILRVDSPGGSG 353 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 A + I + + +KP++ + AAS GY +S +N IVA E ++ GSIGVL PY Sbjct: 354 LASDKILSELILAQKQKPLVVSMSGTAASGGYWVSLNANKIVAGENTVTGSIGVLAAKPY 413 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 +K +K+G+ + + F E++P+ + Y FV V+E RN+ Sbjct: 414 IKELQEKIGLERNVLVRGKFADAFNFFDELSPETYAKFDRFIGDFYEEFVEKVAEGRNMT 473 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--KDWNPPKNY 258 + ++ GR+WTG AK++GL+D +GG + + +L S + + PK + Sbjct: 474 PEAVRKIAQGRVWTGKRAKEIGLVDELGGLQTAVEVAKSLAGIDSASMVTLVRYPRPKTF 533 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 W ++ S++ + + +K+ + L Sbjct: 534 WSTIWEDESLARVSAMFVAAIKKDLYREL 562 Score = 86.2 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 54/282 (19%), Positives = 115/282 (40%), Gaps = 21/282 (7%) Query: 6 KKIKTRYVMLSLVTLTV-VYFSWSSHVEDNSPHVARIAIRGQIEDSQE------------ 52 +KI ++L + + + VY S V V + ++G++ + +E Sbjct: 10 RKIFLTILVLVFILIGIGVYRVLSPSVAIPEQSVLMLDVQGELPEVREDEEFPLFAEAQP 69 Query: 53 -----LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 L+ +++ S DD ++V + S + + +AI + I Sbjct: 70 LALQELLVTLKKASVDDRIDLIVVRIQSLSTQMAKLDELRQAIADYRKSGKEIWAFLSFP 129 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP- 166 + YL++ A N I + S++ G+ + Y + L+K+GV ++ K K+ P Sbjct: 130 GDSEYLLASACNHIYLEKHSMMMLDGLKSERLYFRTPLEKMGVKVQVAKRENYKSAAEPL 189 Query: 167 -FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLI 224 + ++ ++D Y +V V+ SR + ++D + EA ++GL+ Sbjct: 190 LRDAPSAFDLEQRNALLDDFYESYVNAVAASRQMSRAAYERVINDIAFVSDKEASELGLV 249 Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 D V ++ + L A ++ K + + Y DL++L Sbjct: 250 DSVIFFRDLKRQLIAKYEVKASDKDDFFVSGETYRGVDLESL 291 >gi|298708810|emb|CBJ30769.1| signal peptide peptidase [Ectocarpus siliculosus] Length = 625 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 72/281 (25%), Positives = 127/281 (45%), Gaps = 16/281 (5%) Query: 26 SWSSHVEDNSPHVARIAIRGQIE---------------DSQELIERIERISRDDSATALI 70 S +VA + G I S L +R++ + D S A++ Sbjct: 297 SAKGAKNPAPKNVALVNANGAITRFADPGVGPGSTEQATSSALCKRLQEVIDDPSIGAVV 356 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + + SPGGSA A ++I A+++V+ KPV+ + ++AAS GY+I+ A + IVA T++ Sbjct: 357 LRVDSPGGSAVASDSIAAAVRRVRLAGKPVVCSMGDLAASGGYMIAAACDTIVAQPTTIT 416 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ V+ L G+ + S++ S SP E +P+ +M+ V Y F Sbjct: 417 GSIGVIAAKLSVQRLLKAWGIQVDSIELSENHLAFSPLQEFSPQQRSLMEKRVGEIYEDF 476 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V V+ RN+ D+ L ++ GR+WTG +A GL+D +GG G ++ Sbjct: 477 VGGVAAGRNMSVDEVLKVAKGRVWTGRQALDRGLVDELGGLNIAIAIAKKAGGLPEDARV 536 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + + + ++ ++ +A+ Sbjct: 537 VEAERRSLVQAATVFISGGGDSVTESTGGVRSAIFALAYAI 577 Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 71/222 (31%), Gaps = 30/222 (13%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPG---GSAYAGEAIFRAIQKVKNRKPVI---- 100 +++++++ +E ++D+ ++ S G + + A+ + + Sbjct: 1 METRDVVDALEMAAKDNKVRGVLGRFSYRSWGGGYLACVQEVRDAVTRFREAGSDASATA 60 Query: 101 --------------------TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 T A Y ++ A ++ +T VG G Q + Sbjct: 61 GEGAEADGRQRKRFTIAVADTFGEGGPAVGEYFLASAFEKVLVQKTGYVGLTGSGGQKLF 120 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + FLDK G+ + K+ +P + M ++ S V+ SR Sbjct: 121 FRGFLDKYGIKPEVFAREEYKSAAESLVRKAYSPHEREAMTSLLTSMLDDVADGVAASRG 180 Query: 199 IP-YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + A LID + +++V + A Sbjct: 181 FKDRKDVYAIMHDCPLPATLALSANLIDGIMYEDDVESMVKA 222 >gi|117920409|ref|YP_869601.1| signal peptide peptidase SppA, 67K type [Shewanella sp. ANA-3] gi|117612741|gb|ABK48195.1| signal peptide peptidase SppA, 67K type [Shewanella sp. ANA-3] Length = 614 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 65/270 (24%), Positives = 120/270 (44%), Gaps = 14/270 (5%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 V I G I E + + D AL++ + SPGGSA+A Sbjct: 322 VEQDSVGIIVASGTILNGSQPAGQIGGDSTAELLRKARFDKHIKALVLRVDSPGGSAFAS 381 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + + +K KPV+ + +AAS GY IS +++ I A T+L GSIG+ + Sbjct: 382 EQIRQELLALKAAGKPVVVSMGSLAASGGYWISASADYIFATPTTLTGSIGIFGMITTFE 441 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L LG+ V +S + ++P+ ++Q ++ Y F+ LV++ R + + Sbjct: 442 DSLASLGIHTDGVSTSEWAGLSVTRT-LSPQIESVIQRHIERGYLDFISLVAKERKMTLE 500 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFC 261 + ++ GR+W+G +A ++GL+D +G ++ L ++ + F Sbjct: 501 QVDSIAQGRVWSGKKALELGLVDELGDIDQAVAKAAKLADLSLFDTRVIEQELTPEQRFV 560 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 S+S+ L ++ T ++ + A W Sbjct: 561 QQMFASVSAYLPASLS--HSTLLEQMLAQW 588 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 33/277 (11%), Positives = 90/277 (32%), Gaps = 36/277 (12%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------- 51 ++K + + + ++ S ++ + + G I D + Sbjct: 22 IRKFILNLIFFGFLAIILITIGSSEDIQVEENSALVLNLAGSIVDQKQQVDPIEAALKQG 81 Query: 52 ------------ELIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVKNRKP 98 ++I I+ + D+ + +++ L+ ++I A+ + K Sbjct: 82 NNGSSDGEILLSDIIYVIDNATHDNRISTIVLDLAELKRAGISKLQSIGDALNRFKESGK 141 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 + + Y ++ ++ I V G+ Y K L+KL + + Sbjct: 142 KVVAIGNYYEQNQYFLASFADTIYLNPQGSVSLDGLSMYNQYFKSALEKLKIKAHIFRVG 201 Query: 159 PMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLS 208 K+ P+ +++ A + ++ + + + V+E+R I + L Sbjct: 202 TFKSAVEPYMRDDMSDAAREASSALLADVWQSYTQTVAENRQIDANTLVLDSASYLAQLD 261 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 + A + +D + EE + + + Sbjct: 262 KAEGDSATMAINMKWVDTLATDEEFRKVMLDSVGKEK 298 >gi|298374871|ref|ZP_06984829.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 3_1_19] gi|298269239|gb|EFI10894.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 3_1_19] Length = 582 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 68/259 (26%), Positives = 122/259 (47%), Gaps = 14/259 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLS 74 + N+P +A + G+I+ +++ + + ++ +D A++ ++ Sbjct: 289 KASPTKNAPEIAVLYAEGEIKAQTPGNFYDIEQSITEKMADELIKLKNNDDVKAVVFRVN 348 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGGSAY E I+R + ++K KPV+ + +AAS GY ISCA+N I+A +L GSIG+ Sbjct: 349 SPGGSAYISEQIWRQVVELKKVKPVVVSMGNVAASGGYYISCAANKIIAEPNTLTGSIGI 408 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 +P KL ++ VK++ + ++Q V+ Y F+ + Sbjct: 409 FGMFPNASGLFGKLALTTDIVKTNTFSDLGDLSRPMTESEKALIQGYVERGYQTFLSRCA 468 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 E R + + + GR+WTG +AK+ GL+D +GG E + L D + + Sbjct: 469 EGRGMTTEAVNAIGQGRVWTGEQAKERGLVDELGGIELAISTAAGLA-DLDQYSVTTVSG 527 Query: 255 PKNYWFCDLKNLSISSLLE 273 KN+ L++ L Sbjct: 528 SKNFLDEFLESQLGEVKLS 546 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 99/262 (37%), Gaps = 26/262 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPH---VARIAIRGQIEDS------------------ 50 ++ L+++T+ Y + D +P V +I + G + D+ Sbjct: 15 IIITVLISMTIGYIATVGSTPDYTPKSNTVFKIKLDGTLADNPTENPFSALMGDKENMLS 74 Query: 51 -QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 ++L+E I ++D + + + + EAI R++ K + + Sbjct: 75 LKDLLETIRIAKQNDKIAGIYIESGLLSSGSASLEAIRRSLIDFKESGKFVVAYADNFTQ 134 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS- 168 Y + ++ + ++ G+ Q + K +DK+G+ ++ K K PF Sbjct: 135 GNYFLCSVADKVFLNPQGILELTGLASQTLFYKGLMDKVGIEMQIFKVGTYKGAVEPFML 194 Query: 169 -EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA--EAKKVGLID 225 +++ + +Q + + + ++ESR I + ++ ++ + + G ID Sbjct: 195 DKLSEANREQIQSYISTIWDNIAEGIAESRGISVNDINHYANEGLFFADPVKTVECGFID 254 Query: 226 VVGGQEEVWQSLYALGVDQSIR 247 + + EV + L + Sbjct: 255 ELKYKPEVEAYVKELAGQNGEK 276 >gi|50085707|ref|YP_047217.1| putative protease; putative signal peptide peptidase sppA [Acinetobacter sp. ADP1] gi|11345441|gb|AAG34712.1|AF320001_5 putative protease [Acinetobacter sp. BD413] gi|49531683|emb|CAG69395.1| putative protease; putative signal peptide peptidase sppA [Acinetobacter sp. ADP1] Length = 338 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 121/261 (46%), Gaps = 15/261 (5%) Query: 37 HVARIAIRGQI------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 H+A + I G I +S++ + +ER ++ A+ ++++SPGGS + I++ I Sbjct: 81 HLAVVNIIGTIDSSNQSVNSEDTNKALERAFEAKNSKAVALNINSPGGSPVQSDEIWQEI 140 Query: 91 QKV---KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + + K V + +M AS Y I+ A++ I+ +SLVGSIGV+ + K Sbjct: 141 RYLKKQHPDKKVYAVIGDMGASGAYYIASAADEIIVNPSSLVGSIGVIMPNYGITGLAQK 200 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLV 206 LG+ +++ S K S VNP + +Q V+D+ + F+ V E R Sbjct: 201 LGIEDRTLTSGSNKDILSMTKPVNPAQREHIQSVLDNVHAHFINAVKEGRGTRLKSNDPA 260 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW--FCDLK 264 + G WTG +A ++G+ D G + + + L V+ + + +P ++ Sbjct: 261 IFSGLFWTGEQAIQLGVADRTGNLDTLMRELK---VENKVNYTIERSPFESILGKMGSEL 317 Query: 265 NLSISSLLEDTIPLMKQTKVQ 285 IS + + +Q K+Q Sbjct: 318 GQGISQSVSQQLKTEQQAKLQ 338 >gi|209695598|ref|YP_002263527.1| protease IV (endopeptidase IV) [Aliivibrio salmonicida LFI1238] gi|208009550|emb|CAQ79842.1| protease IV (endopeptidase IV) [Aliivibrio salmonicida LFI1238] Length = 617 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 136/284 (47%), Gaps = 14/284 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 ++ + ++ +A + G I D + + DD+ A Sbjct: 308 ISYYDYLPQVHPSIIPDAKDIAVVVASGAIMDGTQRQGTVGGDSTAALLRQARDDDNVKA 367 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I + ++ KPV+ + +AAS GY IS +++ I+A T+ Sbjct: 368 VVLRVDSPGGSAFASEIIRNEVDALQEAGKPVVISMSSVAASGGYWISASADKIIAQPTT 427 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 + GSIG+ + L+K+G+ + +SP ++ Q+MQ ++ Y+ Sbjct: 428 ITGSIGIFGILTTFEKGLEKMGIHSDGISTSPF-NGIGLTRPLDKDVAQVMQLGIEHGYY 486 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F++LVS+ R++ D ++ GR+WTG +A + GLID +G ++ Q+ L + Sbjct: 487 RFIKLVSDHRDMSLDAVDNVAQGRVWTGKDALEHGLIDQLGDFDDAVQAAAELANMDAYN 546 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + +K+ P + +L ++S++ ++ + + +Q + Sbjct: 547 LFWVKEPLTPMEQFLEEL-SMSLNVSVKAELFSLAPEALQPAIS 589 Score = 89.7 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 93/292 (31%), Gaps = 38/292 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSS--HVEDNSPHVARIAIRGQIEDSQ------- 51 + F + + + + + + + S + + + G I + Sbjct: 19 LSFTRQLVLNLFFLAFIGVIAFTFLSTDDIQQDQTVEKKALILDLSGPIVEESKFREPLE 78 Query: 52 ------------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQK 92 ++++ I ++DD+ + L++ S I +AI Sbjct: 79 RVTADLLGSQRSQENVLFDIVDTIRYAAKDDNVSGLVLHLKEMNETSLTKLRYIAKAINT 138 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 K + + + + Y ++ ++ I A V G Y K L+KL VS Sbjct: 139 FKASGKPVYAIGDYYNQSQYYLASYADKIFMAPDGAVLLRGYGAYTLYYKDLLEKLNVST 198 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203 + K+ P+ ++++ A + + ++ VS +R I Sbjct: 199 HVFRVGTYKSAVEPYLRNDMSDAAKASTSAWLTQLWDAYLGDVSTNRQIDAKTLTMPMDQ 258 Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 L+ ++GL+D + ++EV + L K + Sbjct: 259 FIAKLTALNGDLSQMTVELGLVDKLATRQEVRKDLITEFGSNGYDSFKQISY 310 >gi|150010501|ref|YP_001305244.1| protease IV [Parabacteroides distasonis ATCC 8503] gi|149938925|gb|ABR45622.1| protease IV [Parabacteroides distasonis ATCC 8503] Length = 588 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 68/259 (26%), Positives = 122/259 (47%), Gaps = 14/259 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLS 74 + N+P +A + G+I+ +++ + + ++ +D A++ ++ Sbjct: 295 KASPSKNAPEIAVLYAEGEIKAQTPGNFYDIEQSITEKMADELIKLKNNDDVKAVVFRVN 354 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGGSAY E I+R + ++K KPV+ + +AAS GY ISCA+N I+A +L GSIG+ Sbjct: 355 SPGGSAYISEQIWRQVVELKKVKPVVVSMGNVAASGGYYISCAANKIIAEPNTLTGSIGI 414 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 +P KL ++ VK++ + ++Q V+ Y F+ + Sbjct: 415 FGMFPNASGLFGKLALTTDIVKTNTFSDLGDLSRPMTESEKALIQGYVERGYQTFLSRCA 474 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 E R + + + GR+WTG +AK+ GL+D +GG E + L D + + Sbjct: 475 EGRGMTTEAVNAIGQGRVWTGEQAKERGLVDELGGIELAISTAAGLA-DLDQYSVTTVSG 533 Query: 255 PKNYWFCDLKNLSISSLLE 273 KN+ L++ L Sbjct: 534 SKNFLDEFLESQLGEVKLS 552 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 99/262 (37%), Gaps = 26/262 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPH---VARIAIRGQIEDS------------------ 50 ++ L+++T+ Y + D +P V +I + G + D+ Sbjct: 21 IILTVLISMTIGYIATVGSTPDYTPKSNTVFKIKLDGTLADNPAENPFSALMGDKENMLS 80 Query: 51 -QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 ++L+E I ++D + + + + EAI R++ K + + Sbjct: 81 LKDLLETIRIAKQNDKIAGIYIESGLLSSGSASLEAIRRSLIDFKESGKFVVAYADNFTQ 140 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS- 168 Y + ++ + ++ G+ Q + K +DK+G+ ++ K K PF Sbjct: 141 GNYFLCSVADKVFLNPQGILELTGLASQTLFYKGLMDKVGIEMQIFKVGTYKGAVEPFML 200 Query: 169 -EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA--EAKKVGLID 225 +++ + +Q + + + ++ESR I + ++ ++ + + G ID Sbjct: 201 DKLSEANREQIQSYISTIWDNIAEGIAESRGISVNDINHYANEGLFFADPVKTVECGFID 260 Query: 226 VVGGQEEVWQSLYALGVDQSIR 247 + + EV + L + Sbjct: 261 ELKYKPEVEAYVKELAGQNGEK 282 >gi|332707294|ref|ZP_08427347.1| serine peptidase, MEROPS family S49 [Lyngbya majuscula 3L] gi|332354028|gb|EGJ33515.1| serine peptidase, MEROPS family S49 [Lyngbya majuscula 3L] Length = 274 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 73/276 (26%), Positives = 131/276 (47%), Gaps = 10/276 (3%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAG 83 + +ARI I G I + ++E ++ + L++ + SPGG+ Sbjct: 1 MPWPFKRKSLKQIARIEITGAIAGGTRKRVLEALKTVEE-KKFPVLLLRIDSPGGTVGDS 59 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + I+ A+ +++ + ++ ++AS G I + IVA ++ GSIGV+ + ++ Sbjct: 60 QEIYSALVRLREKVKIVASFGNISASGGVYIGMGAEHIVANPGTITGSIGVILRGNNIER 119 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 LDK+GVS K +KS P K + E+ ++Q+++D+SY FV+ V++SRN+ D Sbjct: 120 LLDKIGVSFKVIKSGPYKDILAFDRELTEPEKTILQELIDTSYQQFVQTVAQSRNLDVDV 179 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCD 262 +DGRI+TG +A +G++D +G +E+ L D K PK Sbjct: 180 VKSFADGRIFTGEQAHNLGVVDRLGTEEDARCWAAELVGLDPEKTKSFTIEEPKPLLSRL 239 Query: 263 LKNLSISSLLE-----DTIPLMKQTKVQGLWAVWNP 293 L I + + D + T Q LW ++ P Sbjct: 240 LPGNRIRNRSQISVGIDWLEFELSTSGQPLW-LYRP 274 >gi|297622896|ref|YP_003704330.1| peptidase S49 [Truepera radiovictrix DSM 17093] gi|297164076|gb|ADI13787.1| peptidase S49 [Truepera radiovictrix DSM 17093] Length = 546 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 62/288 (21%), Positives = 113/288 (39%), Gaps = 27/288 (9%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIE-------------------DSQELIERIERISRDDS 65 F + S VA I + G I ++ L+ DD Sbjct: 261 FFPAPLPPLRSRKVAVITLEGAIVTGRSRRLPLPLPLVGGKQAGAETLLRAFRAAEADDG 320 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 A++ ++S GGSA A + I+R + +++ +KPV+ + E+AAS G+ + ++ ++A Sbjct: 321 VAAVVFYVNSGGGSALASDLIWREVVRLRRKKPVVAVMGEVAASGGFYVLTHADHVIAGA 380 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 T+L GSIGVL ++ F + G ++++ SP + + Sbjct: 381 TTLTGSIGVLTGKFVLEEFNRRYGFHPEAIRRGRFALAMSPAHPFTDDERALQARAIAEV 440 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y F V+ R +P + L+ GR+WTG +A+ GL+D +G + + Sbjct: 441 YARFTERVAAGRKLPLGRVEELAGGRVWTGRDAQARGLVDELGDVALGVARAREMAGLRE 500 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 + + P L E P + + +W P Sbjct: 501 DAPVWNVPAPAKL---VLPQPDKPGAWESLYPWREDRAL-----LWAP 540 Score = 70.0 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 79/189 (41%), Gaps = 2/189 (1%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 +EL ++ER+++ ++ + EA+ + +++ + Sbjct: 60 MSLEELTAQLERLAQAPWLKGVLFRVEGLTVGGATAEALRALVTRLRQAGKRTSCYLTRL 119 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP- 166 Y ++ A++ +V E++ + G+ + +++ L + G++ + + K Sbjct: 120 DLLSYFVASAADEVVLPESAELSVFGLALETTFMRDALARYGIAFEKLALRDYKTAGDTL 179 Query: 167 -FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 E++P + +++S V ++ SR + D D + + + A ++G+ID Sbjct: 180 ARQEMSPAQREQYGRLLESLEATLVEAIASSRGVAADTVRAWFDEGVTSASRALELGMID 239 Query: 226 VVGGQEEVW 234 V ++E+ Sbjct: 240 RVAYEDELI 248 >gi|152990177|ref|YP_001355899.1| protease IV [Nitratiruptor sp. SB155-2] gi|151422038|dbj|BAF69542.1| protease IV [Nitratiruptor sp. SB155-2] Length = 296 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 76/276 (27%), Positives = 133/276 (48%), Gaps = 8/276 (2%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K ++ + ++ P++ I + G I D++ ++++IE Sbjct: 23 LDFLQKYFKGILLL----LVLILLLGAFQKTTLQKPNLMEIRLDGPIIDAKNILKKIELA 78 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + + ++ +SSPGG+ I RAI+++ +KPVIT AS Y S S Sbjct: 79 EQ-PNIKGILFVVSSPGGAVAPSIEISRAIKRISAKKPVITYAAGTLASGSYYASIWSKK 137 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 I+A S VGSIGV+ + P +K LDKLGV+ + VK+ K +PF + +Q Sbjct: 138 IIANPGSAVGSIGVILEAPNLKGLLDKLGVAPQVVKAGKYKEAGTPFRPWKTYEKEELQK 197 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 V++ +Y FV V+++R + ++ I+T +A+KVGLID VG + L + Sbjct: 198 VINDTYDMFVHDVAKARRLDPKNKDQFAEAHIFTARQAQKVGLIDEVGDYFSAKKELEKI 257 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 + K+ K F D S+++ D + Sbjct: 258 SGVRKAIWAKEDPWEK---FMDQVAQKSSTMIVDML 290 >gi|315927751|gb|EFV07078.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 298 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 66/279 (23%), Positives = 132/279 (47%), Gaps = 2/279 (0%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 + + +K I T + L+ + + S++ N ++ RI ++G+I DS ++E+I Sbjct: 11 LGYGIKFINTYFKTFVLLLIVIWILIPSANSSSNLANLERIDLKGEIFDSSAVLEKIINA 70 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 D + ++ + SPGG+ + AI+ +K +KPV+ AS YL +N Sbjct: 71 KNDSNIKGVLFVIDSPGGAFAPSMELALAIKDLKIKKPVLVYASGTMASGSYLAGVGANK 130 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 I+A S +GSIGV+ Q + +KLG+ +++++ K+ + N +Q Sbjct: 131 ILANPASFIGSIGVIMQGADLSGLANKLGIKEQTIQAGEFKSAGTFARAWNENERNFLQG 190 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 ++D SY F V++ R + +K ++ R++ A+AK++GLID + E + L L Sbjct: 191 LIDQSYDLFTGFVAKERALDLNKKDQWANARVFLAAKAKELGLIDELSNYENAKKELEKL 250 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 + + + + L+ + S + + I + Sbjct: 251 ANVSN--PVWKEEDKIDKFLNRLEGQTSSLISKSLIEIA 287 >gi|302828750|ref|XP_002945942.1| signal peptide peptidase [Volvox carteri f. nagariensis] gi|300268757|gb|EFJ52937.1| signal peptide peptidase [Volvox carteri f. nagariensis] Length = 683 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 20/247 (8%) Query: 37 HVARIAIRGQIE--------------DSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 VA + G I D+ +L ++ + D + TA++V ++SPGGSA A Sbjct: 336 KVAVVTASGPIVQGPVPPGQSQGQVIDATKLCRQLAALLEDSTVTAVVVRVNSPGGSALA 395 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 +++ + +++ V+ ++ A++ IVA SL GSIGVLF YV Sbjct: 396 SDSLHHELVRLRAAGKVVVVSGGY------YLAAAADHIVAQPGSLTGSIGVLFGKVYVG 449 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L++ G+ + V SPF+ P M+ ++D Y F+ VS R P + Sbjct: 450 KTLEEAGIRSEGVTVGRNADALSPFTGFTPDQEAQMEALIDHVYQDFLEKVSRGRGRPVE 509 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + L+ G+++TG +A +VGL+D +GG E Q L ++ + P + Sbjct: 510 EVRQLAKGKVYTGRQAHEVGLVDELGGLETAVQRAKQLAGLPEDAEVVSYPPRRIPLLLQ 569 Query: 263 LKNLSIS 269 L S + Sbjct: 570 LLRRSGA 576 >gi|269962123|ref|ZP_06176477.1| Protease IV [Vibrio harveyi 1DA3] gi|269833207|gb|EEZ87312.1| Protease IV [Vibrio harveyi 1DA3] Length = 616 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 68/274 (24%), Positives = 126/274 (45%), Gaps = 13/274 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 + + ++ + +A + G I D + + + DD A Sbjct: 307 IGYYDYLATMRPNLAPSENDIAVVVASGTIMDGQQPRGTVGGDTVASLLRQARNDDKVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I ++ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEVEALKEAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + +KLG+S V +SP + + ++ A + Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGFNKLGISTDGVGTSPF-SGDGITTGLSTGASEAFQLGIEHGYK 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--S 245 F+ LV +R++ D+ ++ GR+WTG +A GL+D +G ++ + L + Sbjct: 486 RFISLVGSNRDMSLDEVDKVAQGRVWTGQDALSFGLVDQMGDFDDAVKLAAKLAEVENYE 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 I +++ P + + N SL D + Sbjct: 546 IYWVEEPLSPTEQFIQEFMNQVKVSLGIDATSFL 579 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 93/284 (32%), Gaps = 37/284 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + FV + ++ + + ++ S + + + G I + + Sbjct: 19 ITFVRLALMNLIFLVMIAVFYFAFTYTGESQPTVDKESALVMNLSGPIVEQRRYVNPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93 ++++ I D + L+++L P + I +A+ + Sbjct: 79 VAGSILGNEIPKENVLFDIVDTIRYAKDDPKVSGLVLALRDMPETNLTKLRYIAKALNEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ + A V G Y K L+KL VS Sbjct: 139 KTSGKPVYAVGDFYNQSQYYLASYADKVFLAPDGGVLIKGYSSYSMYYKTLLEKLDVSTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF +++ A + + + FV V+ +R I D Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESATRWITQLWSAFVDDVATNRKIDAKVLNPTMDEL 258 Query: 212 I--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 + A K+GL+D + +++V + Sbjct: 259 LAEMKSVDGDLAQLALKMGLVDELATRQDVRKLFAKEFGSDGKD 302 >gi|160871776|ref|ZP_02061908.1| protease [Rickettsiella grylli] gi|160872532|ref|ZP_02062664.1| protease [Rickettsiella grylli] gi|159120575|gb|EDP45913.1| protease [Rickettsiella grylli] gi|159121331|gb|EDP46669.1| protease [Rickettsiella grylli] Length = 319 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 59/249 (23%), Positives = 102/249 (40%), Gaps = 14/249 (5%) Query: 29 SHVEDNSPHVARIAIRGQIED-----SQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 H+ + I+G I D + +IE ++ D + +I+ ++SPGGS Sbjct: 60 PTTSKAKAHIGLVDIKGIINDNSAANADNVIEGLQNAFEDKNTRTVILRINSPGGSPVQA 119 Query: 84 EAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 I+ I+ + + + ++ ASA Y I+ AS+ I A +SLVGSIGVL Sbjct: 120 AQIYHEIRYLRHQYPKTKLYAVCDDLCASAAYYIASASDRIYANPSSLVGSIGVLMDGFG 179 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + K+GV + + + K PFS ++ + ++ + + F+ V + R Sbjct: 180 FVETMKKVGVERRLLTAGDHKGFLDPFSPEKLDEKRIAERMLANVHQQFIHAVKQGRGNR 239 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 L G WTG EA +GLID G + + L + I D+ Sbjct: 240 LKNNPELFSGLAWTGEEALPLGLIDGFGDLNSLSRELIK------NKNIVDYTVKPGLLQ 293 Query: 261 CDLKNLSIS 269 + + Sbjct: 294 QLSDRIGAA 302 >gi|262373137|ref|ZP_06066416.1| signal peptide peptidase SppA, 36K type [Acinetobacter junii SH205] gi|262313162|gb|EEY94247.1| signal peptide peptidase SppA, 36K type [Acinetobacter junii SH205] Length = 345 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 69/302 (22%), Positives = 132/302 (43%), Gaps = 27/302 (8%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN--SPHVARIAIRGQI--------EDSQEL 53 K + Y+++ L+ ++ + + + S H+A + I G I +S++ Sbjct: 51 FFKCLGFAYLLIVLIAMSKSCSTTTEKATTSISSDHLAVVDIIGTIDSSSSQSAVNSEDT 110 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASA 110 + ++R + A+ ++++SPGGS + I++ I+ +K + K V + +M AS Sbjct: 111 NKALKRAFEASGSKAIALNINSPGGSPVQSDEIWQEIRYLKKQYPAKKVYAVIGDMGASG 170 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 Y I+ A++ I+ +SLVGSIGV+ + KLG+ +++ S K S + Sbjct: 171 AYYIASAADEIIVNPSSLVGSIGVIMPNYGLSGLTQKLGIEDRTLTSGNNKDILSMTKPI 230 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGG 229 NP +Q V+D+ + F+ V E R + G W+G +A +G+ D G Sbjct: 231 NPTQQAHVQSVLDNVHSHFINAVKEGRGKRLKSNDPAIFSGLFWSGEQAIALGVADRSGS 290 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL------SISSLLEDTIPLMKQTK 283 + + L + + D+ N L + ISS L + + K Sbjct: 291 LTTLMRDL-------KVEQKVDYTVQHNPLESILGRMGTKIGEGISSSLATQLDTQQNAK 343 Query: 284 VQ 285 +Q Sbjct: 344 LQ 345 >gi|226227952|ref|YP_002762058.1| protease IV [Gemmatimonas aurantiaca T-27] gi|226091143|dbj|BAH39588.1| protease IV [Gemmatimonas aurantiaca T-27] Length = 638 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 71/274 (25%), Positives = 127/274 (46%), Gaps = 11/274 (4%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLS 74 ++ + S VA + +G I D + L + ++ D +L++ ++ Sbjct: 329 LAMSTARMPSASQVVAVVYAQGDIVDGEGAEGQIGGEALSRELRKVRNDAKVKSLVLRVN 388 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGGS A E I R + + +KPV+ + +AAS GY IS AS I A ++ GSIGV Sbjct: 389 SPGGSVIASERIQRELALINAKKPVVVSMGSLAASGGYWISTASRQIFAEPNTITGSIGV 448 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 P VK ++ GV+ +VK+ + + ++Q D+ Y F+ V+ Sbjct: 449 FAIVPNVKGLANRHGVTFDTVKTGRYADILTLSRPRTEAELAVLQRGTDAVYDAFIARVA 508 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 +SR +P D +++GR+W+GA+A ++GL+D +GG + ++ L ++++ Sbjct: 509 QSRRLPVDSVRAIAEGRVWSGAQALRLGLVDSLGGLDAALRTAARLARITGDYDVREYPR 568 Query: 255 PKNY--WFCDLKNLSISSLLEDTIPLMKQTKVQG 286 K F + S S + + QG Sbjct: 569 VKTPTERFTEFFEGSPSPVAARVSKAVTGLSTQG 602 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 86/266 (32%), Gaps = 31/266 (11%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSP-HVARIAIRGQIEDSQELIE----------- 55 I V+L ++ + + + + P + I + + D E Sbjct: 19 IAVGVVLLIVIAVGFAASAGTRTAVEVRPGSILVIDLEQPLADQAARSESRGLFDDALTT 78 Query: 56 ------------RIERISRDDSATALIVS----LSSPGGSAYAGEAIFRAIQKVKNRKPV 99 I + DD +++ A + A++ K K Sbjct: 79 GVSPLPLRSATVAIRAAADDDRIGGILLRGTVLSDGVSSGYAALREMRAALEDFKASKKP 138 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 + Y ++ A++ I + G+ + ++ +K G+ ++ + Sbjct: 139 VLAYLVTPDVRTYYVASAADSITLDPFGSLLFPGMASEQVFLSGLFEKYGIGVQVSRVGR 198 Query: 160 MKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 KA PF+ +++P+ + + + R V++SR + I + Sbjct: 199 FKAAVEPFTRSDMSPENRLQVASYLGDMWAEVKRGVADSRQVDTVALQLQADTHGILLPS 258 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGV 242 +A+ L+D VG + V L + Sbjct: 259 DAQDAKLVDRVGYFDTVLDDLQRIVN 284 >gi|145632931|ref|ZP_01788664.1| protease IV [Haemophilus influenzae 3655] gi|144986587|gb|EDJ93153.1| protease IV [Haemophilus influenzae 3655] Length = 615 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 69/256 (26%), Positives = 126/256 (49%), Gaps = 14/256 (5%) Query: 36 PHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 +A + + G I D + + + + D+S A+I+ ++SPGGSA+A E I Sbjct: 322 NKIAVVNVEGTIIDGESDEENAGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEII 381 Query: 87 FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + + ++ KPVI + MAAS GY IS ++ I+A ++ GSIG+ +P + + Sbjct: 382 RQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFTMFPTFENSI 441 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV V ++ + + FS + + Q ++ Y F+ +VS+ R + + Sbjct: 442 KKIGVHADGVSTTELANTSA-FSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKIQVD 500 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L+ G++W G++A + GL+D +G E L + ++D++ WF D Sbjct: 501 KLAQGQVWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNV 557 Query: 266 LSISSLLEDTIPLMKQ 281 IS+LL DT ++ Sbjct: 558 SLISTLLRDTKKGAQE 573 Score = 82.7 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 55/287 (19%), Positives = 109/287 (37%), Gaps = 44/287 (15%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52 ++ + V L V L V S+SS + + S + + G + D+++ Sbjct: 14 FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTALTSEGALLLNLDGYLADNRDETLRWQD 73 Query: 53 ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93 ++ I++ D L++ L+ G A + I AI Sbjct: 74 ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHF 133 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K+ + + + Y ++ ++ I V G+ + Y K LDKL V+ Sbjct: 134 KDAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF ++++ +A MQ + ++ +V VSE+RNI D+ L + + Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDRI--LPNAK 251 Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + A++ GL+ V + ++ + AL S K Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKKFTALFGKGSDGK 298 >gi|86605621|ref|YP_474384.1| signal peptide peptidase SppA, 36K type [Synechococcus sp. JA-3-3Ab] gi|86554163|gb|ABC99121.1| signal peptide peptidase SppA, 36K type [Synechococcus sp. JA-3-3Ab] Length = 268 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 124/241 (51%), Gaps = 5/241 (2%) Query: 37 HVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 + RI + G I+ + +++ ++ + A+++ + SPGG+ + I+ A+ +++ Sbjct: 13 QIGRIEVTGVIDGRTRERVLKALQEVEE-RQIPAVVLRIDSPGGTVADSQEIYNALSRLR 71 Query: 95 NRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 RK ++ +AAS G I+ + IV+ ++ GSIGV+ + ++ LDK+G+S Sbjct: 72 ERKGTRIVASFGNIAASGGVYIAMGAEKIVSNPGTITGSIGVIIRGNNLERLLDKIGISF 131 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 K +KS P K S E+ P+ ++Q+++D +Y FV+ V+ +R + + +DGRI Sbjct: 132 KVIKSGPYKDILSFDRELTPEERNILQELIDITYGQFVQTVAAARRLSVNVVKTFADGRI 191 Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 ++G +A +G++D +G +E+ L K D P + W L + L Sbjct: 192 FSGEQALHLGVVDRLGTEEDARLWAAELSGLPPDAKFCDLLPRRRGWARLLPAAEALARL 251 Query: 273 E 273 + Sbjct: 252 Q 252 >gi|269965994|ref|ZP_06180086.1| Protease IV [Vibrio alginolyticus 40B] gi|269829390|gb|EEZ83632.1| Protease IV [Vibrio alginolyticus 40B] Length = 616 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 66/274 (24%), Positives = 124/274 (45%), Gaps = 13/274 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 + + +A + G I D + + + D+ A Sbjct: 307 IGYYDYLATIRPDYTLPQHDIAVVLASGAIMDGQQPRGTVGGDTVASLLRQARNDEKVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I ++ + + KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEVEALKQAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + KLG++ V +SP+ + + ++ A Q+ Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGFSKLGINTDGVGTSPL-SGDGITTGLSEGASQVFQLGIEHGYK 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-- 245 F+ LV E+R++ ++ ++ GR+WTG +A GL+D +G ++ + L Sbjct: 486 RFISLVGENRDMSLEEVDKVAQGRVWTGQDALSFGLVDQMGDFDDAVELAAKLANVTDYG 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 I +++ P + + SL D L+ Sbjct: 546 IYWVEEPLSPTELFLQEFMKQVKVSLGIDATSLL 579 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 91/284 (32%), Gaps = 37/284 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + F+ + +L + + ++ + + G I + + Sbjct: 19 ITFIRLALANLIFLLMIAVFYFAFTYTGDGQPVVEKESALVMNLSGPIVEQRRYVNPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93 ++++ I D + L+++L P + I +A+ + Sbjct: 79 FAGSLLGNELPKENVLFDIVDTIRYAKDDPKVSGLVLALRDMPETNLTKLRYIAKALNEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ + A V G Y K L+KL VS Sbjct: 139 KASGKPVYAVGDFYNQSQYYLASYADKVYLAPDGGVLIKGYSAYSMYYKTLLEKLDVSTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF +++ A + V + FV V+ +RNI D Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESATRWVTQLWSAFVDDVTTNRNIDAKVLNPTMDEL 258 Query: 212 I--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 I A K+GL+D + ++++ Sbjct: 259 INEMKSVNGDIAQLAVKLGLVDELATRQDIRTLFAKQFGSDGKD 302 >gi|327394084|dbj|BAK11506.1| protease IV SppA [Pantoea ananatis AJ13355] Length = 624 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 75/285 (26%), Positives = 135/285 (47%), Gaps = 22/285 (7%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATAL 69 ++++ ++ ++A I G I D E +I D A+ Sbjct: 315 SVSIYDYNVKPDATQQKGNIAVIMASGAIMDGDETPGNVGGDTTAAQIRDARLDPKIKAI 374 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 I+ ++SPGGS A EAI + K KP++ + MAAS GY IS ++ I+A+ ++L Sbjct: 375 ILRVNSPGGSVTASEAIRAELAAAKAAGKPIVVSMGGMAASGGYWISTPASYIIASPSTL 434 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIG+ ++ L +GV V +SP+ + + P+ Q+MQ +++ YH Sbjct: 435 TGSIGIFGVINTLENSLASIGVHTDGVATSPLADV-ASTKALPPEVQQLMQLTIENGYHN 493 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 FV LV+ SR+ ++ ++ G +WTG++AK GL+D +G ++ + L + Sbjct: 494 FVGLVAASRHKTPEQIDAIAQGHVWTGSDAKANGLVDALGDFDDAVKKAAELAKVS--QP 551 Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 DW ++ F DL +++ ++ +P + A W P Sbjct: 552 QLDW-YQEDPGFIDLMLNQMNASVQAVLP-------DPIKA-WLP 587 Score = 82.7 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 43/286 (15%), Positives = 98/286 (34%), Gaps = 41/286 (14%) Query: 1 MEFVLK---KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------ 51 + F+ + + ++++ V + + SH ++ + G + D Sbjct: 23 LNFIRELILNLFLIFLIVVCVGIWLQVSGSGSHSAPIQQGALKVDLTGVLVDKPSVSNRL 82 Query: 52 ---------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRA 89 ++++ I + D + +++ L G + + +A Sbjct: 83 SKIGRQLLGTSSDRLQENSLFDVVDAIRQAKDDSNIKGMVLDLRDFAGGDQPSLQYVGKA 142 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++ + I + + + A Y ++ + I + V G Y K L+KL Sbjct: 143 LREFRESGKPIYALGDSYSQAQYYLASYATKIYLSPQGTVDLHGFATNGLYYKTLLEKLK 202 Query: 150 VSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK---- 203 V+ + K+ PF +++P A V + ++ VS +R I ++ Sbjct: 203 VNSHVFRVGTYKSAVEPFLRDDMSPAARDADTRWVGQLWQNYLNTVSANRQITPEQLFPG 262 Query: 204 ----TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 L + TG A L+DV+G + + Q L Sbjct: 263 ATAIIAGLQAVKGDTGQYALDNKLVDVLGSRADADQMLIKTFGFDK 308 >gi|299769100|ref|YP_003731126.1| putative protease; putative signal peptide peptidase sppA [Acinetobacter sp. DR1] gi|298699188|gb|ADI89753.1| putative protease; putative signal peptide peptidase sppA [Acinetobacter sp. DR1] Length = 338 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 64/295 (21%), Positives = 130/295 (44%), Gaps = 20/295 (6%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQI-------EDSQELI 54 K + Y++ +V + + S V +S H+A + I G I +S++ Sbjct: 45 FFKTLTFIYLLFIIVLMGKGCSTSKEGSAVSSSSAHLAVVDIIGTIDASSNQSVNSEDTN 104 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAG 111 + ++R ++ A+ ++++SPGGS + I++ I+ + K V + +M AS Sbjct: 105 KALKRAFEASNSKAIALNINSPGGSPVQSDEIWQEIRYLKKQHPDKKVYAVIGDMGASGA 164 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I+ +SLVGSIGV+ + KLG+ +++ + K S ++ Sbjct: 165 YYIASAADEIIVNPSSLVGSIGVIMPNYGITGLAQKLGIEDRTLTAGTNKDILSMTKPID 224 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 P Q +Q V+D+ + F+ V E R + G WTG +A ++G+ D G Sbjct: 225 PVQKQHIQSVLDNVHTHFITAVKEGRGKRLKSNDPAIFSGLFWTGEQAIQLGVADRSGNI 284 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 + + L ++ D+ +N L + + + ++ + + Sbjct: 285 TSLMREL-------NLDNKVDYTIERNPLQSILGRMGAQIGQGVSESIAQEVQTR 332 >gi|78356487|ref|YP_387936.1| signal peptide peptidase A [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218892|gb|ABB38241.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 320 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 73/317 (23%), Positives = 138/317 (43%), Gaps = 29/317 (9%) Query: 5 LKKIKTRYVMLSLVT----LTVVYFSWSSHVE------DNSPHVARIAIRGQIED----- 49 ++ + +++SL+ V F ++ + + + G I++ Sbjct: 1 MRYMAVFMILVSLLATGCASGVKLFGGPEALKEYQLQGSGDAKIVVLPVAGVIDNKPERG 60 Query: 50 --------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK--PV 99 Q ++ R+ D + A+I+++ SPGGS + + ++ I + K R V Sbjct: 61 IFADKPGLVQSVVARLRMAEMDPAVRAVILTVDSPGGSVTSSDVLYNEIMRFKQRTGTRV 120 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 + +MA S GY +S A++ I+A +++ GSIG +F P V ++K+GV + KS Sbjct: 121 VALQMDMATSGGYYVSIAADRIIAHPSTITGSIGTIFMRPNVTGLMEKIGVQAVTTKSGA 180 Query: 160 MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAK 219 K SPF E P+ ++Q++V + F++LVSE R + + SD RI T EA Sbjct: 181 HKDIGSPFRENTPEEQAILQNMVTTLNSRFIKLVSERRELQGRE-SSYSDARIMTAQEAL 239 Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP---KNYWFCDLKNLSISSLLEDTI 276 ++GL+D +G + + + L + P + + L+E + Sbjct: 240 ELGLVDSIGYFDNAVAAAHELAGLDEASVVVYRREPFPNDTPYNTITAQAGSAPLVEMPL 299 Query: 277 PLMKQTKVQGLWAVWNP 293 G + +W P Sbjct: 300 ARPLNVPSTGFYYLWAP 316 >gi|329123556|ref|ZP_08252118.1| signal peptide peptidase SppA [Haemophilus aegyptius ATCC 11116] gi|327470298|gb|EGF15758.1| signal peptide peptidase SppA [Haemophilus aegyptius ATCC 11116] Length = 616 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 68/257 (26%), Positives = 128/257 (49%), Gaps = 14/257 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGS 79 + +++ +A + + G I D + + + + D+S A+++ ++SPGGS Sbjct: 316 TPQDNSPNKIAVVNVEGTIIDGESDEENAGGDTIARILRKAQDDNSVKAVVLRVNSPGGS 375 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A+A E I + + ++ KPVI + MAAS GY IS ++ I+A ++ GSIG+ + Sbjct: 376 AFASEMIRQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFAMF 435 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P + + K+GV+ V ++ + S FS + + Q ++ Y F+ +VS+ R Sbjct: 436 PTFENSIKKIGVNADGVSTTELANT-SAFSPLAKPVQDIYQTEIEYGYDRFLEIVSKGRQ 494 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + + L+ G++W G++A + L+D +G E L + ++D++ Sbjct: 495 LSKTQVDKLAQGQVWLGSDAFQNDLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE--- 551 Query: 259 WFCDLKNLSISSLLEDT 275 WF D IS+LL DT Sbjct: 552 WFTDDNVSLISTLLRDT 568 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 110/285 (38%), Gaps = 44/285 (15%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA----RIAIRGQIEDSQE------- 52 ++ + V L V L V S+SS + ++ + + + G + D+++ Sbjct: 14 FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTTLIGEGALLLNLDGYLADNRDETLRWQD 73 Query: 53 ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93 ++ I++ D L++ L+ G A + I AI+ Sbjct: 74 ALNELNGKHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAIRHF 133 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K+ + + + Y ++ ++ I V G+ + Y K LDKL V+ Sbjct: 134 KDAGKSVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF ++++ +A MQ + ++ ++ VSE+R I D+ L + + Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYILSVSENRKIKKDRI--LPNAK 251 Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + A++ GL+ V + ++ + L AL + Sbjct: 252 QYLAELKELKGNSTAYAQQRGLVTDVVTRLDLEKKLTALFGKNAD 296 >gi|291617657|ref|YP_003520399.1| SppA [Pantoea ananatis LMG 20103] gi|291152687|gb|ADD77271.1| SppA [Pantoea ananatis LMG 20103] Length = 624 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 75/285 (26%), Positives = 135/285 (47%), Gaps = 22/285 (7%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATAL 69 ++++ ++ ++A I G I D E +I D A+ Sbjct: 315 SVSIYDYNVKPDATQQKGNIAVIMASGAIMDGDETPGNVGGDTTAAQIRDARLDPKIKAI 374 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 I+ ++SPGGS A EAI + K KP++ + MAAS GY IS ++ I+A+ ++L Sbjct: 375 ILRVNSPGGSVTASEAIRAELAAAKAAGKPIVVSMGGMAASGGYWISTPASYIIASPSTL 434 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIG+ ++ L +GV V +SP+ + + P+ Q+MQ +++ YH Sbjct: 435 TGSIGIFGVINTLENSLASIGVHTDGVATSPLADV-ASTKALPPEVQQLMQLTIENGYHN 493 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 FV LV+ SR+ ++ ++ G +WTG++AK GL+D +G ++ + L + Sbjct: 494 FVGLVAASRHKTPEQIDAIAQGHVWTGSDAKANGLVDALGDFDDAVKKAAELAKVS--QP 551 Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 DW ++ F DL +++ ++ +P + A W P Sbjct: 552 QLDW-YQEDPGFIDLMLNQMNASVQAVLP-------DPIKA-WLP 587 Score = 82.7 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 43/286 (15%), Positives = 98/286 (34%), Gaps = 41/286 (14%) Query: 1 MEFVLK---KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------ 51 + F+ + + ++++ V + + SH ++ + G + D Sbjct: 23 LNFIRELILNLFLIFLIVVCVGIWLQVSGSGSHSAPIQQGALKVDLTGVLVDKPSVSNRL 82 Query: 52 ---------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRA 89 ++++ I + D + +++ L G + + +A Sbjct: 83 SKIGRQLLGTSSDRLQENSLFDVVDAIRQAKDDSNIKGMVLDLRDFAGGDQPSLQYVGKA 142 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++ + I + + + A Y ++ + I + V G Y K L+KL Sbjct: 143 LREFRESGKPIYALGDSYSQAQYYLASYATKIYLSPQGTVDLHGFATNGLYYKTLLEKLK 202 Query: 150 VSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK---- 203 V+ + K+ PF +++P A V + ++ VS +R I ++ Sbjct: 203 VNSHVFRVGTYKSAVEPFLRDDMSPAARDADTRWVGQLWQNYLNTVSANRQITPEQLFPG 262 Query: 204 ----TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 L + TG A L+DV+G + + Q L Sbjct: 263 ATAIIAGLQAVKGDTGQYALDNKLVDVLGSRADADQMLIKTFGFDK 308 >gi|296270823|ref|YP_003653455.1| signal peptide peptidase SppA, 36K type [Thermobispora bispora DSM 43833] gi|296093610|gb|ADG89562.1| signal peptide peptidase SppA, 36K type [Thermobispora bispora DSM 43833] Length = 563 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 75/272 (27%), Positives = 120/272 (44%), Gaps = 25/272 (9%) Query: 38 VARIAIRGQI---------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 VA I G I S + +DD A++ + SPGGS A Sbjct: 276 VALIHGIGPIRLGRSGRSPLGASGSMGSDTICAAFRAARKDDKIKAVVFRVDSPGGSYVA 335 Query: 83 GEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +AI+R + + KPVI + ++AAS GY +S A+N+I A +L GSIGV P + Sbjct: 336 SDAIWREVLLTRQAGKPVIVSMGDVAASGGYFVSMAANVIFAHPGTLTGSIGVYGGKPVI 395 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L KLGV+ ++V S E + + + +D Y FV V+++R + Sbjct: 396 SELLGKLGVTSEAVSMGENAEMFSTSREFSAAQWERLNTWLDRVYEDFVTKVADARGLSK 455 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 D L+ GR+WTGA+A + GL+D +GG E+ + + ++ + Sbjct: 456 DHAHELAKGRVWTGADAVRNGLVDELGGLEDALALARSRAGLPATAPVRIY-----PHLN 510 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 L+ + ED M + +V+ W P Sbjct: 511 PLERIRPPESSEDRSAAMARLRVEA----WGP 538 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 88/245 (35%), Gaps = 9/245 (3%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT-----EVHE 105 +++ + R RD AL+V + + + + AI K++ Sbjct: 53 DDVLAGLNRARRDPRVKALLVKIGNAPLGLGMVQELRTAIIKLRAAGKRTIAFAESFGEV 112 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--E 163 + Y ++ A + I + VG G+ + +++ L K GV + + K Sbjct: 113 STGTVPYYLATACDRIYLQPSGDVGLTGLSVETRFLRDALAKAGVEFQLGQRHEYKTAAN 172 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 + + + +V+S+ + +++ R + + L D + GAEA + GL Sbjct: 173 VFTQNHMTEPHRESTARIVESAMEQVIEGIAQGRRLDPARVRELVDRGPFLGAEAVEAGL 232 Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 +D + ++EV +G D +R + + +L+ P+ Sbjct: 233 VDGLKYRDEV--YAETVGEDGRLRYVTRYAKEAAAKRLPHPGAGAVALIHGIGPIRLGRS 290 Query: 284 VQGLW 288 + Sbjct: 291 GRSPL 295 >gi|150004168|ref|YP_001298912.1| protease IV [Bacteroides vulgatus ATCC 8482] gi|294777915|ref|ZP_06743357.1| signal peptide peptidase SppA, 67K type [Bacteroides vulgatus PC510] gi|149932592|gb|ABR39290.1| protease IV [Bacteroides vulgatus ATCC 8482] gi|294448244|gb|EFG16802.1| signal peptide peptidase SppA, 67K type [Bacteroides vulgatus PC510] Length = 593 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 77/278 (27%), Positives = 133/278 (47%), Gaps = 19/278 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVSLSSPGG 78 + + +A G+I D+ Q++ + + ++ +D A+++ ++SPGG Sbjct: 298 PKDKSGNIIAVYYAYGEILDAPGSSTEDCIDVQKMCKDLRKLRDNDDVKAVVLRVNSPGG 357 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQ 137 SAY + I+R + ++K +KPVI + + AAS GY ISCA+N I A T+L GSIG+ Sbjct: 358 SAYGSDQIWREVVRLKEKKPVIVSMGDYAASGGYYISCAANRIFADPTTLTGSIGIFGMM 417 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKA-----EPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 Y K F + LG++ VK++ M P +N ++MQ+ V+ Y FV Sbjct: 418 YSGEKLFTETLGLNFDVVKTNKMADLGASLGPVLTRPLNASEQELMQNYVNRGYKLFVNR 477 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 +E R + + +++GR+WTGA AK +GL+D +GG ++ + ++ I Sbjct: 478 CAEGRKMSTEAIEKVAEGRVWTGAMAKDLGLVDELGGIDKALNAAATQAGIENYSIIGY- 536 Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 P K F L + I + A+ Sbjct: 537 -PEKENIFASLLGNQKKHYINSEIKEYLGSYYNSFKAL 573 Score = 107 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 99/261 (37%), Gaps = 23/261 (8%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQE 52 + +L ++TL + S + + + +G + + Sbjct: 22 FTILGIITLVGIVASSDTETVVKDNSIFVLDFKGSLSERVQENPLQQLLGEEFEAYGLDD 81 Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ I++ +D + + S S + E I A+ K I + A Y Sbjct: 82 ILASIKKAKDNDKIKGIYIQPSYLEASYASLEEIRNALLDFKESGKFIVAYADQYAQGMY 141 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEV 170 +S ++ I+ +G G Q + K + KLG+ ++ + K+ PF +E+ Sbjct: 142 YLSSVADKIIINPQGSIGWHGAGMQPVFFKNLVSKLGLEVQVFRVGTYKSAVEPFIATEM 201 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--GAEAKKVGLIDVVG 228 +P + M + ++S +H + VS+SR IP D +D + E + L D + Sbjct: 202 SPANREQMTECLESVWHRILADVSDSRRIPTDTLNAYADRYMDFCQAEEYIQCKLADTLM 261 Query: 229 GQEEVWQSLYALGVDQSIRKI 249 ++EV L L K+ Sbjct: 262 YKDEVISYLKQLSGRDENDKL 282 >gi|126433677|ref|YP_001069368.1| signal peptide peptidase SppA, 67K type [Mycobacterium sp. JLS] gi|126233477|gb|ABN96877.1| signal peptide peptidase SppA, 67K type [Mycobacterium sp. JLS] Length = 593 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 64/283 (22%), Positives = 117/283 (41%), Gaps = 21/283 (7%) Query: 27 WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70 S P +A + + G I + + + D +A++ Sbjct: 291 PSIPGRKAKPTIAVVTLHGPIVSGRGGPGLSPLGNSSAGGDTIAAALREAAADKDVSAIV 350 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLV 129 + + SPGGS E I+R + + + + + +AAS GY +S ++ IVA ++ Sbjct: 351 LRVESPGGSVTGSETIWREVLRTREGGTPVVASMGAVAASGGYYVSMGADAIVANPGTIT 410 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ + D+LGV SV+++ S S + ++ D Y F Sbjct: 411 GSIGVVTGKLVARELKDRLGVGSDSVRTNANADAWSANSPFTDEQQAHVEAEADLFYTDF 470 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V V++ R + D+ ++ GR+WTGA+AK GL+D +GG L + + Sbjct: 471 VERVADGRGLSVDEVAEVARGRVWTGADAKDRGLVDELGGLRTAIDRAKVLAGLEPDTDV 530 Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW 288 + P + L+ + ++ L D + ++ V L Sbjct: 531 RIVGYPASSLLDLLRPKQSSQPAAASLPDALGVLVGRSVVSLI 573 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 84/237 (35%), Gaps = 2/237 (0%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79 + + +A I+ G+ ++++ I R + DD LI + Sbjct: 34 VLELDLMSVPPETSGFDPLAMISAGGRPMVLRQVVAAIHRAADDDRVAGLIARVQISAAP 93 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A + + AI +KP + + Y ++ A + + VG +G Sbjct: 94 AAPVQELREAIAAFSAKKPSVAWAETYPGTLSYYLASAFREVWMQPSGTVGLVGFATSAL 153 Query: 140 YVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 +++ LDK G+ + K+ + +++S + V+ESR Sbjct: 154 FLRDALDKAGIQAQFTARGEYKSAANLFTQDSYTEPHREADSRLIESLNQQVLTAVAESR 213 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + D L+D A GL+D +G ++E + + L + + +P Sbjct: 214 KLNPDDIDALADKAPLLRDAAVDGGLVDRIGFRDEAYARVAELAGAEGVTPQNTDSP 270 >gi|120598749|ref|YP_963323.1| signal peptide peptidase SppA, 67K type [Shewanella sp. W3-18-1] gi|146293174|ref|YP_001183598.1| signal peptide peptidase SppA, 67K type [Shewanella putrefaciens CN-32] gi|120558842|gb|ABM24769.1| signal peptide peptidase SppA, 67K type [Shewanella sp. W3-18-1] gi|145564864|gb|ABP75799.1| signal peptide peptidase SppA, 67K type [Shewanella putrefaciens CN-32] gi|319426314|gb|ADV54388.1| signal peptide peptidase SppA, 67K type [Shewanella putrefaciens 200] Length = 615 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 65/280 (23%), Positives = 120/280 (42%), Gaps = 14/280 (5%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSL 73 + V I G I E + + D AL++ + Sbjct: 312 LTLVAPKPSFIEQDSVGIIVASGTILNGKQPAGQIGGDSTAELLRKARFDKHIKALVLRV 371 Query: 74 SSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 SPGGSA+A E I + + +K KPV+ + +AAS GY IS +++ I A T+L GSI Sbjct: 372 DSPGGSAFASEQIRQELLALKAAGKPVVVSMGSLAASGGYWISASADYIFATPTTLTGSI 431 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 G+ + LD +G+ V +S + ++ ++Q ++ Y F+ L Sbjct: 432 GIFGMITTFEDSLDSIGIHTDGVSTSEWAGLSVTRT-LSSSVEAVIQRHIERGYLNFISL 490 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKD 251 V++ RN+ ++ ++ GR+W+G +A ++GL+D +G +E L ++ + Sbjct: 491 VAKERNMTLEQVDSIAQGRVWSGKKALELGLVDELGDIDEAIAKAAKLANLNLFDTRVIE 550 Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 F S+SS L ++ + ++ + W Sbjct: 551 QELTPEQLFIQQMFASVSSYLPASLS--HSSVLEQMLQQW 588 >gi|242239399|ref|YP_002987580.1| signal peptide peptidase SppA, 67K type [Dickeya dadantii Ech703] gi|242131456|gb|ACS85758.1| signal peptide peptidase SppA, 67K type [Dickeya dadantii Ech703] Length = 617 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 11/226 (4%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 ++ +S +A I G I D ++I D A+++ ++SPGGS Sbjct: 318 NNPVADSNEIAVIFANGTIVDGPETPGFVGGDTTADQIREARLDPKIKAVVLRVNSPGGS 377 Query: 80 AYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + V + KPV+ + MAAS GY IS ++ I+A+ ++L GSIG+ Sbjct: 378 VSASELIRAELAAVRQAGKPVVVSMGGMAASGGYWISTPASAIIASPSTLTGSIGIFGVL 437 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + LD +GV V +SP+ + A +MQ ++ Y FV LV++SR Sbjct: 438 TTFENSLDSVGVHTDGVATSPLADLAETKGLPSETAQ-LMQINIERGYKTFVSLVAQSRK 496 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 + ++ G +W G++AK GL+D +G ++ + L + Sbjct: 497 KTPEDVDAIAQGHVWIGSDAKANGLVDQLGDFDDAVKKAADLAGLE 542 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 51/333 (15%), Positives = 114/333 (34%), Gaps = 50/333 (15%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARI-AIRGQIEDSQ-------- 51 + F+ + I +++ ++ +Y + + A + + G + D Sbjct: 19 LNFIREFILNLFLLALILIAVGIYSQFKTAQVVEPTRGALLFDLSGIVVDKPSINNKLRQ 78 Query: 52 -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91 ++++ I + D++ T +++ LS G+ + I +A++ Sbjct: 79 LGREFFGVAPNRRQENSLFDIVDTIRQAKDDNNITGMVMDLSDFSGADQPSLQYIGKALR 138 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + ++ I + + A Y ++ +N I V G Y K LDKL VS Sbjct: 139 EFRDAGKPIFAIGDNFTQAQYYLASFANKIYLTPQGNVDLHGFATNNLYYKTLLDKLKVS 198 Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------ 203 + K+ PF +++P A + V + ++ V+ +R I + Sbjct: 199 THIFRVGTYKSAVEPFIRDDMSPAAREADSRWVSLLWQNYLNTVAANRQITAQQLFPGAD 258 Query: 204 --TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA------LGVDQSIRKIKDWNPP 255 L T A + L+D V + + QSL + + I D+ P Sbjct: 259 GLLKNLRAVEGDTARYALENKLVDEVATRPAIEQSLVKAFGWDAKNKNFNATSIYDYKPN 318 Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + + ++ ++ + G Sbjct: 319 NPVADSNEIAVIFANGT-----IVDGPETPGFV 346 >gi|57168750|ref|ZP_00367881.1| protease IV (PspA) [Campylobacter coli RM2228] gi|305432508|ref|ZP_07401670.1| signal peptide peptidase SppA [Campylobacter coli JV20] gi|57019797|gb|EAL56480.1| protease IV (PspA) [Campylobacter coli RM2228] gi|304444547|gb|EFM37198.1| signal peptide peptidase SppA [Campylobacter coli JV20] Length = 298 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 136/287 (47%), Gaps = 2/287 (0%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 + V+K I T + L+ + + SS+ + ++ RI ++G+I DS EL+E+I Sbjct: 11 LGSVIKFINTYFKTFVLLLIVIWLLVPSSNSSSSYANLERIDLKGEILDSSELLEKIISA 70 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 +D+ ++ + SPGG+ + AI+ +K +KPVI AS YL +N Sbjct: 71 KNNDNIKGVLFVIDSPGGAFAPSMELALAIKDLKTKKPVIAYASGTMASGSYLAGVGANK 130 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 I+A S +GSIGV+ Q + K+G+ +++++ K+ + + + + +Q+ Sbjct: 131 ILANPASFIGSIGVIMQGADLSELAKKIGIKEQTIQAGEFKSAGTFTRAWSEEEREFLQN 190 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 ++D SY F V++ R++ DK ++ R++ AK +GLID + E + L L Sbjct: 191 LIDESYDLFSEFVAKERDLELDKRKDWANARVFLAQNAKDLGLIDELSNYENAKKELQEL 250 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + + + L++ S + L + + + L Sbjct: 251 AKV--LNPVWKEEGRIDRFLNRLESQSSNFLGKVISDTVLRLNANFL 295 >gi|62179887|ref|YP_216304.1| protease 4 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127520|gb|AAX65223.1| protease IV, a signal peptide peptidase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 618 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 14/268 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D +A I G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ L +GV V +SP+ S ++P+ QMMQ ++ Y F+ LV+++R Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L + + Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLAYYQDEPTV 556 Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284 + +++ S ++L + I M + Sbjct: 557 LDMVMDSMTGSVRAMLPEAIQAMLPAPL 584 Score = 97.4 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 99/282 (35%), Gaps = 40/282 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + V + + ++ L LV + + S+ E + + I G I D Sbjct: 19 LNLVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90 +++ I + D + T +++ L + G+ I +A+ Sbjct: 79 ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ VS +R I + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + DG T A L+D + +V ++L Sbjct: 259 QAIIDGLTSVGGDTAKYAFDHKLVDALASSADVEKALTKQFG 300 >gi|265757003|ref|ZP_06090865.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 3_1_33FAA] gi|263233502|gb|EEZ19131.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 3_1_33FAA] Length = 593 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 77/278 (27%), Positives = 133/278 (47%), Gaps = 19/278 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVSLSSPGG 78 + + +A G+I D+ Q++ + + ++ +D A+++ ++SPGG Sbjct: 298 PKDKSGNVIAVYYAYGEILDAPGSSTEDCIDVQKMCKDLRKLRDNDDVKAVVLRVNSPGG 357 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQ 137 SAY + I+R + ++K +KPVI + + AAS GY ISCA++ I A T+L GSIG+ Sbjct: 358 SAYGSDQIWREVVRLKEKKPVIVSMGDYAASGGYYISCAADRIFADPTTLTGSIGIFGMM 417 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKA-----EPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 Y K F + LG++ VK++ M P +N ++MQ+ V+ Y FV Sbjct: 418 YSGEKLFTETLGLNFDVVKTNKMADLGASLGPILTRPLNASEQELMQNYVNRGYKLFVSR 477 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 +E R + + +++GR+WTGA AK +GLID +GG ++ + ++ I Sbjct: 478 CAEGRKMSTEAIEKVAEGRVWTGAMAKDLGLIDELGGIDKALNAAATQAGIENYSIIGY- 536 Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 P K F L + I + A+ Sbjct: 537 -PEKENIFASLLGNQKKHYVNSEIKEYLGSYYNSFKAL 573 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 99/261 (37%), Gaps = 23/261 (8%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQE 52 + +L ++TL + S + + + +G + + Sbjct: 22 FTILGIITLVGIVASSDTETVVKDNSIFVLDFKGSLSERVQENPLQQLLGEEFEAYGLDD 81 Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ I++ +D + + S S + E I A+ K I + A Y Sbjct: 82 ILASIKKAKDNDKIKGIYIQPSYLEASYASLEEIRNALLDFKESGKFIVAYADQYAQKMY 141 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEV 170 +S ++ I+ +G G Q + K + KLG+ I+ + K+ PF +E+ Sbjct: 142 YLSSVADKIIINPQGSIGWHGAGMQPVFFKNLVSKLGLEIQVFRVGTYKSAVEPFIATEM 201 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--GAEAKKVGLIDVVG 228 +P + M + ++S ++ VS+SR+IP D +D + E + GL D + Sbjct: 202 SPANREQMTECLESVWNRIQADVSDSRHIPTDTLNAYADRYMDFCQAEEYVQCGLADTLM 261 Query: 229 GQEEVWQSLYALGVDQSIRKI 249 + EV L L K+ Sbjct: 262 YKNEVISYLKQLSGRDEDDKL 282 >gi|254882872|ref|ZP_05255582.1| protease IV [Bacteroides sp. 4_3_47FAA] gi|319639672|ref|ZP_07994407.1| protease IV [Bacteroides sp. 3_1_40A] gi|254835665|gb|EET15974.1| protease IV [Bacteroides sp. 4_3_47FAA] gi|317388703|gb|EFV69547.1| protease IV [Bacteroides sp. 3_1_40A] Length = 593 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 77/286 (26%), Positives = 136/286 (47%), Gaps = 19/286 (6%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALI 70 ++ + + + +A G+I D+ Q++ + + ++ +D A++ Sbjct: 290 IINVKKNVPKDKSGNIIAVYYAYGEILDAPGSSTEDCIDVQKMCKDLRKLRDNDDVKAVV 349 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + ++SPGGSAY + I+R + ++K +KPVI + + AAS GY ISCA+N I A T+L G Sbjct: 350 LRVNSPGGSAYGSDQIWREVVRLKEKKPVIVSMGDYAASGGYYISCAANRIFADPTTLTG 409 Query: 131 SIGVL-FQYPYVKPFLDKLGVSIKSVKSSPMKA-----EPSPFSEVNPKAVQMMQDVVDS 184 SIG+ Y K F + LG++ VK++ M P +N ++MQ+ V+ Sbjct: 410 SIGIFGMMYSGEKLFTETLGLNFDVVKTNKMADLGASLGPVLTRPLNASEQELMQNYVNR 469 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 Y FV +E R + + +++GR+WTGA AK +GL+D +GG ++ + + Sbjct: 470 GYKLFVNRCAEGRKMSTEAIEKVAEGRVWTGAMAKDLGLVDELGGIDKALNAAATQAGIE 529 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + I P K F L + I + A+ Sbjct: 530 NYSIIGY--PEKENIFASLLGNQKKHYINSEIKEYLGSYYNSFKAL 573 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 99/261 (37%), Gaps = 23/261 (8%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQE 52 + +L ++TL + S + + + +G + + Sbjct: 22 FTILGIITLVGIVASSDTETVVKDNSIFVLDFKGSLSERVQENPLQQLLGEEFEAYGLDD 81 Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ I++ +D + + S S + E I A+ K I + A Y Sbjct: 82 ILASIKKAKDNDKIKGIYIQPSYLEASYASLEEIRNALLDFKESGKFIVAYADQYAQGMY 141 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEV 170 +S ++ I+ +G G Q + K + KLG+ ++ + K+ PF +E+ Sbjct: 142 YLSSVADKIIINPQGSIGWHGAGMQPVFFKNLVSKLGLEVQVFRVGTYKSAVEPFIATEM 201 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--GAEAKKVGLIDVVG 228 +P + M + ++S +H + VS+SR IP D +D + E + L D + Sbjct: 202 SPANRKQMTECLESVWHRILADVSDSRRIPTDTLNAYADRYMDFCQAEEYIQCKLADTLM 261 Query: 229 GQEEVWQSLYALGVDQSIRKI 249 ++EV L L K+ Sbjct: 262 YKDEVISYLKQLSGRDEDDKL 282 >gi|2129226|pir||C64381 proteinase IV (EC 3.4.-.-) - Methanococcus jannaschii Length = 315 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 142/280 (50%), Gaps = 17/280 (6%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIE---------------DSQELIERIERISRD 63 L V+ S + +A++ + +I D++ I ++ + +D Sbjct: 27 ILLVMSLSGENVDLFGGEKIAKVYLCNEIYFDYNQGDGIFPQQKKDARYYINLLDDLEKD 86 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 DS +++ ++SPGG A E + R ++++ +KPV+ V + AS Y++S ++ IVA Sbjct: 87 DSVKGVLLVVNSPGGEVIASEKLARKVEELAKKKPVVVYVEGLDASGAYMVSAPADYIVA 146 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 + S+VGSIGV + + KLG+++ ++K+ K SPF + + + +Q +++ Sbjct: 147 EKHSIVGSIGVRMDLMHYYGLMKKLGINVTTIKAGKYKDIGSPFRPMTKEEKEYLQKMIN 206 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 +Y FV+ V+E R++ + TL ++DG+I++G +AKKVGL+D VG +E+ + L L Sbjct: 207 ETYMDFVKWVAEHRHLSINYTLKIADGKIYSGEDAKKVGLVDEVGTEEDALKKLEQLANV 266 Query: 244 QSIRKIKDWNPPKNYWFCDL--KNLSISSLLEDTIPLMKQ 281 + ++ F I + + + M++ Sbjct: 267 SNPEIVEYGLEENKGLFGLTYYLGYGIGKGIGEVLYGMEK 306 >gi|89073275|ref|ZP_01159805.1| putative protease IV [Photobacterium sp. SKA34] gi|89050985|gb|EAR56449.1| putative protease IV [Photobacterium sp. SKA34] Length = 615 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 66/262 (25%), Positives = 119/262 (45%), Gaps = 12/262 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 ++ + + VA I G I D + + + D+ + Sbjct: 306 ISYYDYLSMLVDDQKPSDNKVAVIVASGAIVDGKSSQGTAGGDTIAALLRKARFDNDVKS 365 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +I+ + SPGGSA+A E I + +K KPV+ + +AAS GY IS +++ I+A T+ Sbjct: 366 VILRVDSPGGSAFASEVIRNEVDALKAAGKPVVVSMSSVAASGGYWISSSADKIIAQPTT 425 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 + GSIG+ + L+KLGV V ++P + + ++ Q VD+ Y Sbjct: 426 ITGSIGIFAILTTFEKSLEKLGVYSDGVGTTPF-SGVGVTRALPENIGKVFQLGVDNGYQ 484 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F+ LVS+ R++ ++ ++ GR+WTG +AK+ GL+D +G + +L Sbjct: 485 RFIGLVSKYRHMSLEQADKIAQGRVWTGKDAKERGLVDELGDFDTAITEAVSLAKI-DDY 543 Query: 248 KIKDWNPPKNYWFCDLKNLSIS 269 ++ P + K +S Sbjct: 544 QLVWMQQPLSPIQQFFKEMSSE 565 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 49/325 (15%), Positives = 110/325 (33%), Gaps = 39/325 (12%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + F K I +L + + + E + + G I + + Sbjct: 19 INFARKFILNLVFLLIVGAIIFAFSDNDESPEKPEASALVLNLSGPIVEQKNYDNPLDSV 78 Query: 52 ----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVK 94 +++E I + D S T L+++ + P S I +AIQ+ K Sbjct: 79 ISDVMGQPPVEQNVLFDIVEAIRTATTDSSITGLVLNLKNMPETSLTKLRYIAKAIQEFK 138 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + + + Y ++ ++ I + + G Y K L+KL V+ Sbjct: 139 ASGKPVYAYGGHYSQSQYYLASYADKIFMSPDGGIMLKGYGTYTLYYKTLLEKLDVTTHV 198 Query: 155 VKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------T 204 + K+ P+ ++ A + +D + + V+++RNI Sbjct: 199 FRVGTYKSFVEPYIRDGMSTPAKEANTVWLDQLWDAYTSDVAKNRNIDAKTLTPEMNSFI 258 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI---RKIKDWNPPKNYWFC 261 L +KK+GL+D + + ++ Q L D ++I ++ Sbjct: 259 EQLIAVNGDFAQLSKKMGLVDELVTRPQLSQILMKEFGDNGEHSFKQISYYDYLSMLVDD 318 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQG 286 + + +++ + ++ QG Sbjct: 319 QKPSDNKVAVIVASGAIVDGKSSQG 343 >gi|161614303|ref|YP_001588268.1| protease 4 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363667|gb|ABX67435.1| hypothetical protein SPAB_02048 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 618 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 14/268 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D +A I G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ L +GV V +SP+ S ++P+ QMMQ ++ Y F+ LV+++R Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L + + Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556 Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284 + +++ S ++L + I M + Sbjct: 557 LDMVMDSMTGSVRAMLPEAIQAMLPAPL 584 Score = 100 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S+ E + + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90 +++ I + D + T +++ L + G+ I +A+ Sbjct: 79 ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ VS +R I + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + DG T A L+D + +V ++L Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300 >gi|301311313|ref|ZP_07217240.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 20_3] gi|300830399|gb|EFK61042.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 20_3] Length = 588 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 68/259 (26%), Positives = 122/259 (47%), Gaps = 14/259 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLS 74 + N+P +A + G+I+ +++ + + ++ +D A++ ++ Sbjct: 295 KASPTKNAPEIAVLYAEGEIKAQTPGNFYDIEQSITEKMADELIKLKNNDDVKAVVFRVN 354 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGGSAY E I+R + ++K KPV+ + +AAS GY ISCA+N I+A +L GSIG+ Sbjct: 355 SPGGSAYISEQIWRQVVELKKVKPVVVSMGNVAASGGYYISCAANKIIAEPNTLTGSIGI 414 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 +P KL ++ VK++ + ++Q V+ Y F+ + Sbjct: 415 FGMFPNASGLFGKLALTTDIVKTNTFSDLGDLSRPMTESEKALIQGYVERGYQTFLSRCA 474 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 E R + + + GR+WTG +AK+ GL+D +GG E + L D + + Sbjct: 475 EGRGMTTEAVNAIGQGRVWTGEQAKERGLVDELGGIELAISTAAGLA-DLDQYSVTTVSG 533 Query: 255 PKNYWFCDLKNLSISSLLE 273 KN+ L++ L Sbjct: 534 SKNFLDEFLESQLGEVKLS 552 Score = 89.7 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 98/262 (37%), Gaps = 26/262 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVED---NSPHVARIAIRGQIEDS------------------ 50 ++ L+++T+ Y + D S V +I + G + D+ Sbjct: 21 IILTVLISMTIGYIATVGSTPDYTPKSNTVFKIKLDGTLADNPAENPFSALMGDKENMLS 80 Query: 51 -QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 ++L+E I ++D + + + + EAI R++ K + + Sbjct: 81 LKDLLETIRIAKQNDKIAGIYIESGLLSSGSASLEAIRRSLIDFKESGKFVVAYADNFTQ 140 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y + ++ + ++ G+ Q + K +DK+G+ ++ K K PF Sbjct: 141 GNYFLCSVADKVFLNPQGILELTGLASQTLFYKGLMDKVGIEMQIFKVGTYKGAVEPFIL 200 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA--EAKKVGLID 225 +++ + +Q + + + ++ESR I + ++ ++ + + G ID Sbjct: 201 DKLSEANREQIQSYISTIWDNIAEGIAESRGISVNDINHYANEGLFFADPVKTVECGFID 260 Query: 226 VVGGQEEVWQSLYALGVDQSIR 247 + + EV + L + Sbjct: 261 ELKYKPEVEAYVKELAGQNGEK 282 >gi|168233210|ref|ZP_02658268.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194469685|ref|ZP_03075669.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|200389848|ref|ZP_03216459.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|194456049|gb|EDX44888.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|199602293|gb|EDZ00839.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205332636|gb|EDZ19400.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 618 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 14/268 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D +A I G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ L +GV V +SP+ S ++P+ QMMQ ++ Y F+ LV+++R Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L + + Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556 Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284 + +++ S ++L + I M + Sbjct: 557 LDMVMDSMTGSVRAMLPEAIQAMLPAPL 584 Score = 97.0 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 99/282 (35%), Gaps = 40/282 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + V + + ++ L LV + + S+ E + + I G I D Sbjct: 19 LNLVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90 +++ I + D + T +++ L + G+ I +A+ Sbjct: 79 ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ VS +R I + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + DG T A L+D + +V ++L Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300 >gi|224584189|ref|YP_002637987.1| protease 4 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468716|gb|ACN46546.1| protease IV [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322714354|gb|EFZ05925.1| protease IV [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 618 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 14/268 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D +A I G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ L +GV V +SP+ S ++P+ QMMQ ++ Y F+ LV+++R Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L + + Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556 Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284 + +++ S ++L + I M + Sbjct: 557 LDMVMDSMTGSVRAMLPEAIQAMLPAPL 584 Score = 97.4 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 99/282 (35%), Gaps = 40/282 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + V + + ++ L LV + + S+ E + + I G I D Sbjct: 19 LNLVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90 +++ I + D + T +++ L + G+ I +A+ Sbjct: 79 ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ VS +R I + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + DG T A L+D + +V ++L Sbjct: 259 QAIIDGLTSVGGDTAKYAFDHKLVDALASSADVEKALTKQFG 300 >gi|16760600|ref|NP_456217.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141640|ref|NP_804982.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413719|ref|YP_150794.1| protease 4 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168463310|ref|ZP_02697241.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821937|ref|ZP_02833937.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443380|ref|YP_002040552.1| protease 4 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197250444|ref|YP_002146744.1| protease 4 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197362642|ref|YP_002142279.1| protease 4 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|207857196|ref|YP_002243847.1| protease 4 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213028304|ref|ZP_03342751.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213162980|ref|ZP_03348690.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213647253|ref|ZP_03377306.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213850391|ref|ZP_03381289.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238910887|ref|ZP_04654724.1| protease 4 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289829513|ref|ZP_06547115.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|81514303|sp|Q8Z6F3|SPPA_SALTI RecName: Full=Protease 4; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase gi|25290100|pir||AB0711 protease IV (EC 3.4.21.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502896|emb|CAD02059.1| protease IV [Salmonella enterica subsp. enterica serovar Typhi] gi|29137268|gb|AAO68831.1| protease IV [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127976|gb|AAV77482.1| protease IV [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194402043|gb|ACF62265.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195634238|gb|EDX52590.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094119|emb|CAR59619.1| protease IV [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214147|gb|ACH51544.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205341603|gb|EDZ28367.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206708999|emb|CAR33329.1| protease IV [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|320086223|emb|CBY95997.1| protease IV [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 618 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 14/268 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D +A I G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ L +GV V +SP+ S ++P+ QMMQ ++ Y F+ LV+++R Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L + + Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556 Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284 + +++ S ++L + I M + Sbjct: 557 LDMVMDSMTGSVRAMLPEAIQAMLPAPL 584 Score = 100 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S+ E + + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90 +++ I + D + T +++ L + G+ I +A+ Sbjct: 79 ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ VS +R I + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + DG T A L+D + +V ++L Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300 >gi|319897159|ref|YP_004135354.1| protease iv (signal peptide peptidase) [Haemophilus influenzae F3031] gi|317432663|emb|CBY81026.1| protease IV (signal peptide peptidase) [Haemophilus influenzae F3031] Length = 616 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 67/257 (26%), Positives = 128/257 (49%), Gaps = 14/257 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGS 79 + +++ +A + + G I D + + + + D+S A+++ ++SPGGS Sbjct: 316 TPQDNSPNKIAVVNVEGTIIDGESDEENAGGDTIARILRKAQDDNSVKAVVLRVNSPGGS 375 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A+A E I + + ++ KPVI + MAAS GY IS ++ I+A ++ GSIG+ + Sbjct: 376 AFASEMIRQETENLQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFAMF 435 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P + + K+GV+ V ++ + + FS + + Q ++ Y F+ +VS+ R Sbjct: 436 PTFENSIKKIGVNADGVSTTELANTSA-FSPLAKPVQDIYQTEIEYGYDRFLEIVSKGRQ 494 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + + L+ G++W G++A + L+D +G E L + ++D++ Sbjct: 495 LSKTQVDKLAQGQVWLGSDAFQNDLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE--- 551 Query: 259 WFCDLKNLSISSLLEDT 275 WF D IS+LL DT Sbjct: 552 WFTDDNVSLISTLLRDT 568 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 50/285 (17%), Positives = 110/285 (38%), Gaps = 44/285 (15%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA----RIAIRGQIEDSQE------- 52 ++ + + L V L V S+SS + ++ + + + G + D+++ Sbjct: 14 FIRDLVMNVMFLGFVLLLVAIISFSSGGKKSTTLIGEGALLLNLDGYLADNRDETLRWQD 73 Query: 53 ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93 ++ I++ D L++ L+ G A + I AI+ Sbjct: 74 ALNELNGKHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAIRHF 133 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K+ + + + Y ++ ++ I V G+ + Y K LDKL V+ Sbjct: 134 KDAGKAVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF ++++ +A MQ + ++ ++ VSE+R I D+ L + + Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYILSVSENRKIKKDRI--LPNAK 251 Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + A++ GL+ V + ++ + L AL + Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTHVVTRLDLEKKLTALFGKNAD 296 >gi|268317676|ref|YP_003291395.1| signal peptide peptidase SppA, 67K type [Rhodothermus marinus DSM 4252] gi|262335210|gb|ACY49007.1| signal peptide peptidase SppA, 67K type [Rhodothermus marinus DSM 4252] Length = 604 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 66/256 (25%), Positives = 120/256 (46%), Gaps = 1/256 (0%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGG 78 V + V + G++ S+ LI +E + + A+++ ++SPGG Sbjct: 307 IAVVYAVGTIVPGKSQQEPVPVPFLGGRMLGSETLIAALEEARQSERVKAVVLRINSPGG 366 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 SA A EA+++AI++ KPVI + ++AAS GY IS A++ IVA ++ GSIGV+ Sbjct: 367 SAAASEAMWQAIRRTAEEKPVIVSMGDVAASGGYWISTAADTIVADPLTITGSIGVIGML 426 Query: 139 PYVKPFLDK-LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + +G++ +++SP S P V+ +Q + ++Y F++ VS++R Sbjct: 427 LNAGGLFENKIGITYDLLRTSPYADMFSGLVPPEPYEVERLQQTIMATYRTFLQKVSQAR 486 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 +P D + GR+W G A ++GL+DV+GG + P Sbjct: 487 GLPVDSVDAIGGGRVWIGETAHRIGLVDVLGGLDRAIAIAAEKAGLAPGTYRIRVLPRPR 546 Query: 258 YWFCDLKNLSISSLLE 273 + L + ++ Sbjct: 547 MFAERLAEQLEARAVQ 562 Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 47/288 (16%), Positives = 101/288 (35%), Gaps = 32/288 (11%) Query: 1 MEFVLKKIKTRYVMLSLVTLTV---------VYFSWSSHVEDNSPHVARIAIRGQI---- 47 M F+ + + L + L + + S V I + G I Sbjct: 1 MRFLSSLLASILGTLIAIGLVFLFLFLFLMGLATAVEQPPAIRSGSVLVIRLSGPIPEVV 60 Query: 48 --------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 +L +++ + D A+ + L +P S + E + A+ Sbjct: 61 SPDPLSRLLLEEPPYGLHDLTHALKKAAADRRIEAVWLRLQNPQLSWASLEEVRTALVDF 120 Query: 94 KNRKPVITEVHEMAASAGYLISCAS--NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + ++ E AS + + A S G + K LDKL V Sbjct: 121 RASGKLLIASCEDFGMDEATYFLASAADSVFAGPESFFEFNGFYLTAEFYKRLLDKLEVE 180 Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL-S 208 + V++ K+ PF ++ + +Q ++D+ F+ V+E+R + + L + Sbjct: 181 AQVVRAGAFKSAGEPFVREHLSEENRLQLQALLDAYNRRFLETVAEARGLSVEDVNRLAT 240 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 + + + EA + GL+D + ++ + L K++ + + Sbjct: 241 EQLLLSAEEAVQAGLLDGLRDAGQIERMLKTHLGYGPDEKLRRVSLRQ 288 >gi|17231505|ref|NP_488053.1| protease IV [Nostoc sp. PCC 7120] gi|17133148|dbj|BAB75712.1| protease IV [Nostoc sp. PCC 7120] Length = 273 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 68/260 (26%), Positives = 129/260 (49%), Gaps = 5/260 (1%) Query: 36 PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 +ARI I G I + ++E ++ + AL++ + SPGG+ + I+ A++++ Sbjct: 11 KQIARIEITGAIASGTRKRVLEALKTVEE-RKFPALLLRIDSPGGTVGDSQEIYSALKRL 69 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + + ++ ++AS G I + I+A ++ GSIGV+ + ++ LDK+GVS K Sbjct: 70 REKIKIVASFGNISASGGVYIGMGAEHIMANPGTITGSIGVILRGNNLERLLDKIGVSFK 129 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 +KS P K S E+ ++Q+++D+SY FV+ V+E R++ DK +DGRI+ Sbjct: 130 VIKSGPYKDILSFDRELTEPEQDILQELIDTSYQQFVQTVAEGRSLAVDKVKSFADGRIF 189 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS--SL 271 TG +A ++G++D +G +EE + L + + + S S Sbjct: 190 TGQQALELGVVDRLGTEEEARRWTAELVGLDPEKTPCYTLEERKPLLSRVLPGSRKGYSR 249 Query: 272 LEDTIPLMKQTKVQGLWAVW 291 L +I ++ +W Sbjct: 250 LGASIDWLEFEMSTSGLPLW 269 >gi|268678929|ref|YP_003303360.1| signal peptide peptidase SppA, 36K type [Sulfurospirillum deleyianum DSM 6946] gi|268616960|gb|ACZ11325.1| signal peptide peptidase SppA, 36K type [Sulfurospirillum deleyianum DSM 6946] Length = 286 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 60/240 (25%), Positives = 119/240 (49%), Gaps = 2/240 (0%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63 + I+ + + + L V+ F S E +P++A + + G+I + +E++E I++ D Sbjct: 15 IFTYIQNHFKAMLFLLLLVLIF--GSQDELKTPNLAIVKLEGEILNVEEILENIDKAQND 72 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 ++ +++ + SPGG+ + A++++ +KPV+ S Y S SN I+A Sbjct: 73 ENIKGVLLHVDSPGGALAPSIELSMAVKRLAEKKPVVAYAGGSMTSGSYYASIWSNYIIA 132 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 + +GSIGVLFQ P V KLG+S + + + K + E K +++++D Sbjct: 133 NPGAFIGSIGVLFQAPNVAELAKKLGISEQVLSAGEYKQMGTFTREWTQKERGALKNLID 192 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 +Y FV+ V+ +R + K ++ +++ ++A V LID +G + L Sbjct: 193 DAYDLFVKDVATARGLNLAKPDEFANAQVFIASKALNVHLIDEIGSLSSAKTKVEELANI 252 >gi|321223920|gb|EFX48983.1| Protease IV [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 618 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 72/268 (26%), Positives = 122/268 (45%), Gaps = 14/268 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D +A I G I D +E +I D A+++ ++SPGGS Sbjct: 319 ETPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ L +GV V +SP+ S ++P+ QMMQ ++ Y F+ LV+++R Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L + + Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556 Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284 + +++ S ++L +TI M + Sbjct: 557 LDMVMDSMTGSVRAMLPETIQAMLPAPL 584 Score = 100 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S+ E + + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90 +++ I + D + T +++ L + G+ I +A+ Sbjct: 79 ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ VS +R I + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + DG T A L+D + +V ++L Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300 >gi|310767792|gb|ADP12742.1| protease 4 [Erwinia sp. Ejp617] Length = 618 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 72/268 (26%), Positives = 118/268 (44%), Gaps = 14/268 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGS 79 + +VA I G I D +E I D A++ ++SPGGS Sbjct: 319 KDNGSSDGNVAVILANGAIMDGEEAPGSVGGDTTALEIRAARLDPKIKAIVFRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + K KPV+ + MAAS GY +S +N I+A+ +L GSIG+ Sbjct: 379 VTASETIREELAAAKEAGKPVVVSMGGMAASGGYWVSTPANYIIASPNTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ + + P+ QMMQ +D Y F+ LV++SRN Sbjct: 439 NTVESSLDAIGVHTDGVATSPLADV-ASTKALPPEVQQMMQLSIDKGYQNFIGLVAKSRN 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG++AK GLID +G ++ L ++ + Sbjct: 498 KTSEEIDKIAQGHVWTGSDAKAKGLIDALGDFDDAVAKAAELAKLDK-PQLSWYQGEPGL 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + +S+ +P + + Sbjct: 557 LDMLFSQVDVSAH--AALPATLKAYLPA 582 Score = 97.0 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 97/286 (33%), Gaps = 40/286 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + +++L +V ++F + + + G + D Sbjct: 19 LNFVREFVLNLFLILLIVVALGLWFQLHNAGTPAATQKGALVVNLSGAVVDKPSVSNKFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 ++++ I + D + T +++ L G + I +A+ Sbjct: 79 KIGRQLLGASSGRLKENSLFDVVDAIRQAKDDTNITGMVLDLRHFAGGDQPSLQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ I E + A Y ++ +N I + V G Y K +DKL + Sbjct: 139 REFRDGGKPIFATGESYSQAQYYLASFANKIYLSPQGNVDLHGFATNSLYYKTLIDKLKI 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF ++P+A V + ++ +++ +R I D+ Sbjct: 199 SSHVFRVGTYKSAVEPFLRDNMSPEARDADGRWVGELWQNYLNMLAANRQITVDQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 L T AK+ L+D + V L Sbjct: 259 QGVLNGLQKLGGDTAQYAKENKLVDELASSSRVEHELVKTFGWDKE 304 >gi|262393686|ref|YP_003285540.1| protease IV [Vibrio sp. Ex25] gi|262337280|gb|ACY51075.1| protease IV [Vibrio sp. Ex25] Length = 616 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 66/274 (24%), Positives = 123/274 (44%), Gaps = 13/274 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 + + +A + G I D + + + D+ A Sbjct: 307 IGYYDYLATIRPDYTLPQHDIAVVLASGAIMDGQQPRGTVGGDTVASLLRQARNDEKVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I ++ + + KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEVEALKQAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + KLG++ V +SP + + ++ A Q+ Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGFSKLGINTDGVGTSPF-SGDGITTGLSDGASQVFQLGIEHGYK 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-- 245 F+ LV E+R++ ++ ++ GR+WTG +A GL+D +G ++ + L Sbjct: 486 RFISLVGENRDMSLEEVDNVAQGRVWTGQDALSFGLVDQMGDFDDAVELAAKLANVTDYG 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 I +++ P + + SL D L+ Sbjct: 546 IYWVEEPLSPTELFLQEFMKQVKVSLGIDATSLL 579 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 91/284 (32%), Gaps = 37/284 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + F+ + +L + + ++ + + G I + + Sbjct: 19 ITFIRLALANLIFLLMIAVFYFAFTYTGDGQPVVEKESALVMNLSGPIVEQRRYVNPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93 ++++ I D + L+++L P + I +A+ + Sbjct: 79 FAGSLLGNELPKENVLFDIVDTIRYAKDDPKVSGLVLALRDMPETNLTKLRYIAKALNEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ + A V G Y K L+KL VS Sbjct: 139 KASGKPVYAVGDFYNQSQYYLASYADKVYLAPDGGVLIKGYSAYSMYYKTLLEKLDVSTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF +++ A + V + FV V+ +RNI D Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESATRWVTQLWSAFVDDVTTNRNIDAKVLNPTMDEL 258 Query: 212 IW--------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 I A K+GL+D + ++++ Sbjct: 259 IDEMKSVDGDLAQLAVKLGLVDELATRQDIRTLFAKQFGSDGKD 302 >gi|198245686|ref|YP_002215831.1| protease 4 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197940202|gb|ACH77535.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326623578|gb|EGE29923.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 618 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 14/268 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D +A I G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRINSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ L +GV V +SP+ S ++P+ QMMQ ++ Y F+ LV+++R Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L + + Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556 Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284 + +++ S ++L + I M + Sbjct: 557 LDMVMDSMTGSVRAMLPEAIQAMLPAPL 584 Score = 99.3 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + ++ E + + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQIGNGNNSEQTARGALLLDISGVIVDKPSTNHRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90 +++ I + D + T +++ L + G+ I +A+ Sbjct: 79 ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ VS +R I + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + DG T A L+D + +V ++L Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300 >gi|154148512|ref|YP_001406767.1| signal peptide peptidase SppA, 36K type [Campylobacter hominis ATCC BAA-381] gi|153804521|gb|ABS51528.1| signal peptide peptidase SppA, 36K type [Campylobacter hominis ATCC BAA-381] Length = 291 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 62/277 (22%), Positives = 129/277 (46%), Gaps = 2/277 (0%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63 +L I + + + L + F E ++A I + I D+ +++E+I S + Sbjct: 14 ILGFINKYFKAMIFLLLVYLIFFTGQSDEIEQANLAEIRLNDAIMDANDVLEKIYASSDN 73 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 ++ A++ ++ SPGG+ I +AI+++ +KPVI AS YL + I+A Sbjct: 74 ENIKAVLFNIDSPGGALSPSVEISKAIKELNEKKPVIVYASGTMASGSYLSGVWARKILA 133 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 E S +GSIGV+ Q ++ +K+G+S ++VK+ K + N + +Q++VD Sbjct: 134 NEGSFIGSIGVIMQGANIENLANKIGISEQTVKAGEYKEAGTFMRAWNENERESLQNLVD 193 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 SY +FV V+ +R++ D ++ R++ +A K+GL+D + + + Sbjct: 194 KSYSFFVNEVANARHLNIDNNETWANARVFLADDALKLGLVDEISTYKRAKNETEKISGV 253 Query: 244 QSIRKIKD--WNPPKNYWFCDLKNLSISSLLEDTIPL 278 + ++ + K+ + + + + Sbjct: 254 LNPVWQEEPFYEKMLKRLETSTKSQILGTFTNKILAI 290 >gi|167552353|ref|ZP_02346106.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322985|gb|EDZ10824.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 618 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 14/268 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D +A I G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRINSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ L +GV V +SP+ S ++P+ QMMQ ++ Y F+ LV+++R Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L + + Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556 Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284 + +++ S ++L + I M + Sbjct: 557 LDMVMDSMTGSVRAMLPEAIQAMLPAPL 584 Score = 99.7 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S+ E + + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90 +++ I + D + T +++ L + G+ I +A+ Sbjct: 79 ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ VS +R I + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + DG T A L+D + +V ++L Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300 >gi|218708935|ref|YP_002416556.1| protease IV [Vibrio splendidus LGP32] gi|218321954|emb|CAV17952.1| Protease IV (Endopeptidase IV) [Vibrio splendidus LGP32] Length = 616 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 73/274 (26%), Positives = 126/274 (45%), Gaps = 16/274 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 + S VA I G I D + + DD A+++ + SPGGS Sbjct: 318 PDLTSESHDVAVIVASGAIMDGKQPRGTVGGDTTAALLRQARNDDKVKAVVLRVDSPGGS 377 Query: 80 AYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A+A E I I+ + + KPV+ + +AAS GY IS ++ I+A T+L GSIG+ Sbjct: 378 AFASEVIRNEIEAIKQAGKPVVVSMSSLAASGGYWISMGADKILAQPTTLTGSIGIFSVI 437 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L+ +GV V +SP + ++ A Q +++ Y F+ LV E+R Sbjct: 438 TTFEKGLNDIGVYTDGVGTSPFSGLGIT-TGLSEGAKDAFQMGIENGYRRFISLVGENRG 496 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256 + D ++ GR+WTG +A + GL+D +G ++ + +L + +I +++ Sbjct: 497 MEVDAVDKIAQGRVWTGQDAIEKGLVDEIGDFDDAITAAASLAELETYNIYWVEEPLSAT 556 Query: 257 NYWFCDLKN---LSISSLLEDTIPLMKQTKVQGL 287 + + N +SI ++ IP Q Q L Sbjct: 557 ELFIQEFMNQVQMSIGLDIQSMIPSSLQPVTQQL 590 Score = 94.7 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 96/282 (34%), Gaps = 37/282 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + FV + + +LS+ + VYF S ++ + + G I + Sbjct: 19 ITFVRLALVNLFFLLSIAIIYFVYFHSDTTQPTVPQESALVLNLSGPIVEQSRYINPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 +++E I DD T ++++ P + I +A+ + Sbjct: 79 VTGSLLGKDLPKENVLFDIVETIRYAKDDDKVTGIVLALKELPETNLTKLRYIAKALNEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K I V + + Y ++ + + + V G + K L+KL V+ Sbjct: 139 KATGKPIYAVGDFYNQSQYYLASYATKVFLSPDGGVLLKGYSAYSLFYKTLLEKLDVNTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL------ 205 + K+ PF +++ A + + + +V VS +R I Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESASRWLGQLWGAYVDDVSNNRQIDAKTLNPSMDSF 258 Query: 206 --VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 L A+K+GL+D + +++V L + Sbjct: 259 LKDLESVDGDIAKLAEKLGLVDELATRQQVRLELADVFGSDG 300 >gi|322616683|gb|EFY13592.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619801|gb|EFY16675.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622369|gb|EFY19214.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627893|gb|EFY24683.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633009|gb|EFY29752.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636745|gb|EFY33448.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641229|gb|EFY37870.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645218|gb|EFY41747.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650160|gb|EFY46574.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655734|gb|EFY52036.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660059|gb|EFY56298.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665374|gb|EFY61562.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669639|gb|EFY65786.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673558|gb|EFY69660.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677484|gb|EFY73548.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679851|gb|EFY75890.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687323|gb|EFY83295.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192441|gb|EFZ77671.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199518|gb|EFZ84611.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204132|gb|EFZ89146.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208750|gb|EFZ93688.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210920|gb|EFZ95784.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217726|gb|EGA02441.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220281|gb|EGA04736.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223877|gb|EGA08177.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229529|gb|EGA13652.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232752|gb|EGA16848.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240209|gb|EGA24253.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242803|gb|EGA26824.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249119|gb|EGA33038.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254380|gb|EGA38197.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257169|gb|EGA40872.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263510|gb|EGA47038.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267077|gb|EGA50562.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272181|gb|EGA55595.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 618 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 14/268 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D +A I G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ L +GV V +SP+ S ++P+ QMMQ ++ Y F+ LV+++R Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L + + Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556 Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284 + +++ S ++L + I M + Sbjct: 557 LDMVMDSMTGSVRAMLPEAIQAMLPAPL 584 Score = 100 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 51/282 (18%), Positives = 100/282 (35%), Gaps = 40/282 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S+ E + + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90 +++ I + D + T +++ L + G+ I +A+ Sbjct: 79 ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ I V E + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPIFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ VS +R I + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADNRWIGELWQNYLHTVSANRQISPQQLFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + DG T A L+D + +V ++L Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300 >gi|213427777|ref|ZP_03360527.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 618 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 14/268 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D +A I G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ L +GV V +SP+ S ++P+ QMMQ ++ Y F+ LV+++R Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L + + Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556 Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284 + +++ S ++L + I M + Sbjct: 557 LDMVMDSMTGSVRAMLPEAIQAMLPAPL 584 Score = 99.7 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S+ E + + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90 +++ I + D + T +++ L + G+ I +A+ Sbjct: 79 ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ VS +R I + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + DG T A L+D + +V ++L Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300 >gi|157164394|ref|YP_001467221.1| signal peptide peptidase SppA, 36K type [Campylobacter concisus 13826] gi|157101431|gb|EAT99328.2| signal peptide peptidase SppA, 36K type [Campylobacter concisus 13826] Length = 287 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 65/271 (23%), Positives = 125/271 (46%), Gaps = 4/271 (1%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63 + K I + L L +++F ++ + P++ARI I G I D+ E+++ +E+ D Sbjct: 14 IFKFINNYFKALI--FLLILFFIFAPDSKIKEPNLARIDITGTIVDTSEILDELEKARLD 71 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 + +++ + SPGG+ + A++++K K V+ AS Y ++ I+A Sbjct: 72 SNIKGVLLYIDSPGGALSPSVELAMAVKRLKESKKVLAYAAGNMASGSYYAGVNADAIIA 131 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 + +GSIGV+ Q ++ LGVS + VK+ K + + + + +Q +V+ Sbjct: 132 NPGAFIGSIGVIMQGANIENLAKNLGVSEQVVKAGEFKEAGTFMRSWSKQERESLQGLVN 191 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 +Y FV V+E+RN+ K ++ R++ A K+GLID +G + L + + Sbjct: 192 DAYMLFVSDVAEARNLDIKKKDEWANARVFLAHNALKMGLIDSLGSYIDAQNELAKMSLV 251 Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLED 274 + P I+SL Sbjct: 252 DE--PVWQEKPQLEKIMEKFTKQGINSLFNA 280 >gi|227485721|ref|ZP_03916037.1| S49 family peptidase [Anaerococcus lactolyticus ATCC 51172] gi|227236276|gb|EEI86291.1| S49 family peptidase [Anaerococcus lactolyticus ATCC 51172] Length = 327 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 68/269 (25%), Positives = 136/269 (50%), Gaps = 8/269 (2%) Query: 30 HVEDNSPHVARIAIRGQIEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 +++ + +I++ G I+ + +I ++ ++D + +I++++SPGGS Y E I Sbjct: 54 QGTNSAEKIRKISLEGVIQGDENSEFVISELKDAAKDPTTKGVILTVNSPGGSVYVSEKI 113 Query: 87 FRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + I+ +K +K + + EMAAS GY IS ++ I A+ +L GSIGV+ + Sbjct: 114 AKEIKSLKAKKIPVYSVMEEMAASGGYYISAPTDRIYASNETLTGSIGVIMGGRSFQGLF 173 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 +K G+ ++V S MK + ++N + +Q +VDS++ FV++VSE R++ Sbjct: 174 EKYGIKEQNVVSGKMKDTGTMGRDLNAEEKAYLQALVDSAFGRFVKIVSEGRHMSEKDVR 233 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK---NYWFCD 262 L+DGR++ GA+A K GL+D +G + + + ++ + + F Sbjct: 234 KLADGRVYDGAQAVKNGLVDKIGDIDMAIADMIKENKL-NDPQVVESSYANISLRQLFQK 292 Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 + +L SS + + + Q ++ Sbjct: 293 VSDLKKSSSDLAILKELMEENRQAPMYIY 321 >gi|206601560|gb|EDZ38043.1| Signal peptide peptidase, SppA [Leptospirillum sp. Group II '5-way CG'] Length = 349 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 63/279 (22%), Positives = 116/279 (41%), Gaps = 19/279 (6%) Query: 34 NSPHVARIAIRGQIEDSQE---------------LIERIERISRDDSATALIVSLSSPGG 78 + + I G I D + + + + D +++ + S GG Sbjct: 64 ARDKLLLVPINGFIGDQTSRGLPFLGGRDDTVTRIRATLRKAAEDPRVRGIVLLIDSAGG 123 Query: 79 SAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 S A + ++ +++ K + PV+ + +M AS Y +S A++ + TS+VGSIGV+ Sbjct: 124 SVTASDRVYHLVREFKQKSGIPVMAMIGDMGASGAYYVSVAADEVWTHPTSVVGSIGVVI 183 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 V + K+GV +++ S K SP + K + Q ++ Y F +VS + Sbjct: 184 FNVGVTGLMKKIGVEDRTLSSGAEKEMGSPLKPMTDKDRSLFQGLISDLYTQFFDIVSRN 243 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP- 255 R I D L+DGRI+T +A K L+D +G ++++ + L L + I+ P Sbjct: 244 RQIAPDILKPLADGRIFTARQALKNHLVDRIGYRDDLIRHLKRLMHVKEFEVIRYREPFL 303 Query: 256 -KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 F + M + +W+P Sbjct: 304 AATGIFGSESPADSPMASAGRLAGMLTKSGPTMLYLWDP 342 >gi|325104824|ref|YP_004274478.1| signal peptide peptidase SppA, 67K type [Pedobacter saltans DSM 12145] gi|324973672|gb|ADY52656.1| signal peptide peptidase SppA, 67K type [Pedobacter saltans DSM 12145] Length = 586 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 111/249 (44%), Gaps = 11/249 (4%) Query: 29 SHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGS 79 +S +A I G+I S+ + I + DD A+++ ++SPGGS Sbjct: 297 KPENTSSNRIAVIYANGEINSGEGDQNTIGSEGISRAIRKARLDDKVKAIVLRVNSPGGS 356 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + A + I+R K KP I + + AAS GY ISCA++ I A ++ GSIGV P Sbjct: 357 SLASDVIWRETVLAKKEKPFIVSMGDYAASGGYYISCAADSIFAEPNTITGSIGVFAILP 416 Query: 140 YVKPFLDK-LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 +KPFL+ LG++ VK+ + +++Q V+ Y F + V+E R Sbjct: 417 NLKPFLNNKLGITFDGVKTGEFADFGQVTRPLTSAEKELLQQEVNKIYFDFTKRVAEGRK 476 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 I + GR+WTG +A +GL+D +G E+ A +I + K Sbjct: 477 ISQSYVDSIGQGRVWTGKQAIDLGLVDKIGHIED-AIKSAAKKAKIEDYRIMSYPEKKEG 535 Query: 259 WFCDLKNLS 267 L Sbjct: 536 LLSILDKSG 544 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 97/271 (35%), Gaps = 26/271 (9%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIR-----------------GQ 46 + I + +S++T ++ S S VE + I + G Sbjct: 15 IFLSIVLFIIFISIITAGLINSSN-SKVEIKDNSILHINLNYPILERANPNPLEDLEIGP 73 Query: 47 I-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 I ++++ I DD + + S E I + K + Sbjct: 74 IKKEKTLGLNDILKSIRYAKEDDQIKGIYLDASMVQAGMATVEEIRDELLNFKKSGKFVI 133 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 E+ Y ++ A++ + + G+ + K L+KL + + +K K Sbjct: 134 AYSEVYTQKSYYLASAASKVYLNPVGYLELKGLSSNTMFFKGALNKLEIEPQVIKVGTFK 193 Query: 162 AEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEA 218 + PF +++ M +++S + F ++ R + D + +++ ++ T +A Sbjct: 194 SAVEPFILDKMSDANKLQMSSILNSIFEDFTGKIAIERKLAKDSVVSIANLLKVRTAEDA 253 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 K L+D + ++EV L + + + Sbjct: 254 LKYKLVDALKYKDEVLDELKSKTGIDKKKNL 284 >gi|90417463|ref|ZP_01225386.1| signal peptide peptidase SppA [marine gamma proteobacterium HTCC2207] gi|90330704|gb|EAS45983.1| signal peptide peptidase SppA [marine gamma proteobacterium HTCC2207] Length = 616 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 73/279 (26%), Positives = 123/279 (44%), Gaps = 20/279 (7%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSS 75 S +V P +A + G I D L E I +D A+++ + S Sbjct: 313 LSSLKNVNKGRPEIAVVVASGSIIDGNQPEGTIGGDTLAEMFSAIEDEDQVKAVVLRVDS 372 Query: 76 PGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 PGGSA+A + I +I ++ + PV+ + AAS GY I+ S+ I+A T++ GSIGV Sbjct: 373 PGGSAFASDVIRDSIASLRKKNIPVVISMGSYAASGGYWIATESDKILALSTTITGSIGV 432 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 P + L +G+ V ++ + + P+A +MQ V+ Y F+ LV+ Sbjct: 433 FGVIPTFEDSLSAMGIYSDGVGTTNIAGMMQLSRAMTPEAEMIMQSGVEHVYGRFLTLVA 492 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 ++R ++ GR+WTG +A ++GLID +G + L K+ Sbjct: 493 DARESTPSAIHKIAQGRVWTGKKALELGLIDELGDLNDAIAIAATLAGV-GDYKVNYRRK 551 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 P ++ + IS + + M GL + W P Sbjct: 552 PLSFMEQVMME--ISGNVNAAVSAM------GLQS-WLP 581 Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 100/270 (37%), Gaps = 35/270 (12%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------- 51 ++ + + V+L + + F V +A G + D + Sbjct: 23 IRYMISLVVVLFFIAVVAGMFV-DDIQPMPERGVLYLAPSGTLVDQRSYIDPVSEIFSPP 81 Query: 52 ----------ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVI 100 ++++ ++ D+ T +++ G S E I A+Q+ K I Sbjct: 82 GQRDAETLVRDMVQALDHAQYDERITHVLLDTDYISGGSIAKLEEISAALQRFKQSGKPI 141 Query: 101 TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160 + + + + Y ++ ++ I+ V G Y K LDKL +++ + Sbjct: 142 IAIGDNFSQSQYFLAAHADEIIMNPLGSVMLTGFGSYSSYYKEALDKLKINVHIFRVGKY 201 Query: 161 KAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW----- 213 K+ PF + ++ +A +D++DS + ++ V + R +P L++ Sbjct: 202 KSAVEPFLGTGMSEEARADRRDLLDSLWQFYTSRVEQLRGLPKGALNDLANNMHLKLAEE 261 Query: 214 ---TGAEAKKVGLIDVVGGQEEVWQSLYAL 240 A A + GL+D + + E L + Sbjct: 262 NGDIAALALQQGLVDRIATRSETKAHLLQI 291 >gi|284032927|ref|YP_003382858.1| signal peptide peptidase SppA, 36K type [Kribbella flavida DSM 17836] gi|283812220|gb|ADB34059.1| signal peptide peptidase SppA, 36K type [Kribbella flavida DSM 17836] Length = 552 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 72/272 (26%), Positives = 123/272 (45%), Gaps = 16/272 (5%) Query: 34 NSPHVARIAIRGQIE---------------DSQELIERIERISRDDSATALIVSLSSPGG 78 P VA I + G I S + + ++ DD A+++ + SPGG Sbjct: 262 PKPTVAVIRVNGGITVGRSSGGGPLGSPRSGSDTITAALRAVAADDKVKAVVLRIDSPGG 321 Query: 79 SAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 S A +AI + ++++ KPVI + +AAS GY ++ ++++VA ++ GSIGVL Sbjct: 322 SYVASDAIRHEVLRLRSTGKPVIASMGSVAASGGYFVAMPADVVVAQPGTITGSIGVLSG 381 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 V+ L ++G++ ++V S E +P+ + +++ +D Y FV +E R Sbjct: 382 KGVVRDALGRIGITQQAVSEGTNARMYSAQEEFSPQQWERLEETLDRIYADFVAKAAEDR 441 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 + D+ L+ GR+WTGA+A + L+D +GG E Q A P + Sbjct: 442 GLGVDELEALARGRVWTGADAHRHQLVDELGGFEHALQLACARAGLDRDHIAVTAAPHRT 501 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + S L T PL L+A Sbjct: 502 FLDRLRPPTSTDDLAATTQPLTVDGLTTSLYA 533 Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 83/222 (37%), Gaps = 7/222 (3%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS- 109 +EL+ + + + D+ L+ + P S + + A+ + E Sbjct: 35 RELVVGLRKAAEDEQVVGLVAHVGGPALSLAQVQELRTAVVGFRAAGKRAVAWSESFGEA 94 Query: 110 ----AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--E 163 Y ++ A + I + +G GV Q +V+ LDK GV + K K + Sbjct: 95 GGGTVPYYLATAFDEIWVQPSGELGITGVSVQATFVRGALDKAGVIPQFGKRREYKTAVD 154 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 E+ A +M + +S+Y V ++ R + ++ L D ++ GL Sbjct: 155 TFTEKEMTGPAREMAARLAESAYEQLVEGIAGERELSVERVRELVDNAPLAAEAGREAGL 214 Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 +D +G + +V+ L + ++ ++ D + Sbjct: 215 VDRLGYRSDVYDELEKRFGPTTALLVERYHRRGPRTLHDALD 256 >gi|157375448|ref|YP_001474048.1| acid phosphatase [Shewanella sediminis HAW-EB3] gi|157317822|gb|ABV36920.1| Acid phosphatase [Shewanella sediminis HAW-EB3] Length = 612 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 63/268 (23%), Positives = 116/268 (43%), Gaps = 15/268 (5%) Query: 35 SPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 V I +G I + + + + D+ A+++ + SPGGSA+A E Sbjct: 324 EDTVGIIVAKGTILNGNQPAGQIGGESTSKLLRKARFDEQVKAVVLRVDSPGGSAFASEQ 383 Query: 86 IFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I + + +K KPV+ + AAS GY IS +++ I A T+L GSIG+ + Sbjct: 384 IRQEVLALKTAGKPVVVSMGSYAASGGYWISASADYIYATPTTLTGSIGIFGMVTTFEDS 443 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L +G+ V +S + P+ ++Q ++ YH F+ LV+ R + D Sbjct: 444 LSSIGIHTDGVATSDWAGISVT-KGLTPEIKSVIQRHIERGYHDFISLVATERGMSLDDV 502 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFCDL 263 ++ GR+W+G +A ++GL+D +G + + + +I + F Sbjct: 503 DNIAQGRVWSGKKAVELGLVDELGDLDSAVAKAAKMANLEDFDSQIIEQELSPQELFIQE 562 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWAVW 291 S ++ L T ++ L + W Sbjct: 563 MFASAAAYLPQ---SSTSTVLEQLLSQW 587 Score = 80.8 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 93/278 (33%), Gaps = 36/278 (12%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------- 51 ++K+ ++ +V + V+ +S + + G + + + Sbjct: 22 IRKLILNIFFFGILAAIIVAMTVEDDVKLDSGSALVLNLSGSVVEQKRQVDPIEAAMKSS 81 Query: 52 ------------ELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRKP 98 +++ I+ + D +++++ + + ++I A+ + K Sbjct: 82 KSKDASGELLLADVLNVIDNAALDTRISSIVLDIGHLRWTGISKLQSIGDALTRFKESGK 141 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 I Y ++ ++ I V G+ Y K L+KL + + Sbjct: 142 PIIAKANWYGQNQYFLASFADTIYLNPQGSVELEGLSRYRQYYKSALEKLKIKAHIFRVG 201 Query: 159 PMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLS 208 K+ P+ +++P A + ++++ + + V+E+RNI DK + L Sbjct: 202 TFKSAVEPYIRDDMSPAAKEANTELLNDIWANYETQVAENRNISADKLVLSADQYLIELE 261 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + A + +D + E + Sbjct: 262 RANGKSAEMALNMNWVDELASAEAFRLKMIDTVGKADE 299 >gi|16764646|ref|NP_460261.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167991889|ref|ZP_02572988.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197262148|ref|ZP_03162222.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|16419812|gb|AAL20220.1| protease IV [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197240403|gb|EDY23023.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205329812|gb|EDZ16576.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246504|emb|CBG24314.1| protease IV [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993167|gb|ACY88052.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157832|emb|CBW17326.1| protease IV [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912281|dbj|BAJ36255.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323129566|gb|ADX16996.1| signal peptide peptidase SppA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988183|gb|AEF07166.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 618 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 72/268 (26%), Positives = 122/268 (45%), Gaps = 14/268 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D +A I G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ L +GV V +SP+ S ++P+ QMMQ ++ Y F+ LV+++R Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L + + Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556 Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284 + +++ S ++L +TI M + Sbjct: 557 LDMVMDSMTGSVRAMLPETIQAMLPAPL 584 Score = 100 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S+ E + + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90 +++ I + D + T +++ L + G+ I +A+ Sbjct: 79 ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ VS +R I + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + DG T A L+D + +V ++L Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300 >gi|218961332|ref|YP_001741107.1| putative Acid phosphatase [Candidatus Cloacamonas acidaminovorans] gi|167729989|emb|CAO80901.1| putative Acid phosphatase [Candidatus Cloacamonas acidaminovorans] Length = 819 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 13/240 (5%) Query: 31 VEDNSPHVARIAIRGQIEDSQEL----------IERIERISRDDSATALIVSLSSPGGSA 80 + VA I G I + ++ I + +D +I+ + S GGSA Sbjct: 525 AKPKENLVAVIYASGNIVSGKGTPGQKIAQETSVDLIRKARKDKQYKGIILRVDSGGGSA 584 Query: 81 YAGEAIFRAIQ--KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A + I R ++ K +N+KP++ + AAS GY ISC ++ I+A ++L GSIGV+ Sbjct: 585 QASDIILRELELAKTENKKPIVVSMGGTAASGGYYISCNADKIIAEPSTLTGSIGVVGLM 644 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR- 197 K+ V+ +VK S + QM+ +++ Y FV V R Sbjct: 645 FNGTDMFQKIKVNWDTVKKGEHADMVSINRPWTEEEKQMVIRNIENCYDDFVMKVDAGRP 704 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 N+ ++ + GR+WTG +A+K+GL+D +GG E+ +S+ L + + D K Sbjct: 705 NMTLEQVKQYAQGRVWTGEQAQKIGLVDELGGLEKAKESMSELIGKKGKLTLVDATTKKE 764 Score = 80.4 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 89/231 (38%), Gaps = 10/231 (4%) Query: 32 EDNSPHVARIAIRGQIEDS-QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + +I I + S + +I+ I++ D +++ S S E + A Sbjct: 292 TAPKYKIGKIKIYDTGDKSIESIIDNIKQAKDDLEIEGILLKNPSFSTSLALQEELVDAF 351 Query: 91 QKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 K+ + + S ++ I T V G+ PY+K L LG Sbjct: 352 NDFKSSGKKVCFYYDNIGNGGYIFASSIADKIYLNPTGSVDLRGLSISSPYLKNMLASLG 411 Query: 150 VSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY--DKTL 205 + + + +S K + FSE + P + + ++ S Y ++ + R Sbjct: 412 IEVLNFRSHEYKDAGNMFSEERMTPAEREAYESLLQSLYDQILQRMETGRGDRLVASADE 471 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD----QSIRKIKDW 252 ++++G + +A + GL+D + ++++ + L + + + +++ Sbjct: 472 IINEGPYFIANDALEKGLVDALIYEDQLNKQLKKDFKFSSQHKELTEYREY 522 >gi|331005266|ref|ZP_08328658.1| putative peptidase [gamma proteobacterium IMCC1989] gi|330420943|gb|EGG95217.1| putative peptidase [gamma proteobacterium IMCC1989] Length = 328 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 68/299 (22%), Positives = 128/299 (42%), Gaps = 22/299 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYF-----SWSSHVEDNSPHVARIAIRGQIEDSQ-----ELIE 55 ++ + + + + VV+ S +H HV + + G I Q +L Sbjct: 37 RRWGIFFKLFFCIYIVVVFVGVARQSQVTHYASTEEHVGIVYLDGAIAADQTANANDLAS 96 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGY 112 + + S+ A+I++++SPGGS ++ I+++ K + + ++ AS GY Sbjct: 97 ALRAAFANTSSKAVILAINSPGGSPVQSGYVYDEIKRLRAIHTDKKLYAVISDLGASGGY 156 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 I+ A++ I A ++SLVGSIGV ++KLGV +S S K PF+ Sbjct: 157 YIAAAADEIYADKSSLVGSIGVTASSFGFVGLMEKLGVERRSYTSGEHKGFLDPFAPQRK 216 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + V+DS++ F+R V E R + G IW G +A + GLID +G Sbjct: 217 DETIFWESVLDSTHEQFIRAVEEGRGDRLVAGDEDIYSGLIWNGEQALEKGLIDGLGSAG 276 Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 V + S+ ++ D+ + KN ++ + + + + + + Sbjct: 277 YVARE------VVSVEQVVDYTVRPTPFEEFSKNFGVA--VGEGVGTILNAVINTPIQL 327 >gi|113970247|ref|YP_734040.1| signal peptide peptidase SppA, 67K type [Shewanella sp. MR-4] gi|113884931|gb|ABI38983.1| signal peptide peptidase SppA, 67K type [Shewanella sp. MR-4] Length = 614 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 65/270 (24%), Positives = 120/270 (44%), Gaps = 14/270 (5%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 V I G I E + + D AL++ + SPGGSA+A Sbjct: 322 VEQDSVGIIVASGTILNGSQPAGQIGGDSTAELLRKARFDKHIKALVLRVDSPGGSAFAS 381 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + + +K KPV+ + +AAS GY IS +++ I A T+L GSIG+ + Sbjct: 382 EQIRQELLALKAAGKPVVVSMGSLAASGGYWISASADYIFATPTTLTGSIGIFGMITTFE 441 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L LG+ V +S + ++P+ ++Q ++ Y F+ LV++ R + + Sbjct: 442 DSLASLGIHTDGVSTSEWAGLSVTRT-LSPQIESVIQRHIERGYLDFISLVAKERKMTLE 500 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFC 261 + ++ GR+W+G +A ++GL+D +G ++ L ++ + F Sbjct: 501 QVDSIAQGRVWSGKKALELGLVDELGDIDQAVAKAAKLADLSLFDTRLIEQELTPEQRFV 560 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 S+S+ L ++ T ++ + A W Sbjct: 561 QQMFASVSAYLPASLS--HSTLLEQMLAQW 588 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 32/277 (11%), Positives = 90/277 (32%), Gaps = 36/277 (12%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------- 51 ++K + + + ++ S ++ + + G I D + Sbjct: 22 IRKFILNLIFFGFLAIILITIGSSEDIQVEDNSALVLNLAGSIVDQKQQVDPIEAALKQG 81 Query: 52 ------------ELIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVKNRKP 98 ++I I+ + D+ + +++ L+ ++I A+ + K Sbjct: 82 NNGSSDGEILLADIIYVIDNATHDNRISTIVLDLAELKRAGISKLQSIGDALNRFKESGK 141 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 + + Y ++ ++ I V G+ Y K L+KL + + Sbjct: 142 KVVAIGNYYEQNQYFLASFADTIYLNPQGSVALDGLSMYNQYFKSALEKLKIKAHIFRVG 201 Query: 159 PMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLS 208 K+ P+ +++ A + ++ + + + V+++R I + L Sbjct: 202 TFKSAVEPYMRDDMSDAAREASSALLADVWQSYTQTVAQNRQIDANTLVLDSANYLAQLD 261 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 + A + +D + EE + + + Sbjct: 262 KAEGDSATMAINMKWVDTLATDEEFRKVMLDSVGKEK 298 >gi|90579232|ref|ZP_01235042.1| putative protease IV [Vibrio angustum S14] gi|90440065|gb|EAS65246.1| putative protease IV [Vibrio angustum S14] Length = 615 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 65/262 (24%), Positives = 120/262 (45%), Gaps = 12/262 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 ++ + ++ VA + G I D + + + D+ + Sbjct: 306 ISYYDYLSMLVDDQKPSNNKVAVVVASGAIVDGKSSQGTAGGDTIAALLRKARFDNDVKS 365 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +I+ + SPGGSA+A E I + +K KPV+ + +AAS GY IS +++ I+A T+ Sbjct: 366 VILRVDSPGGSAFASEVIRNEVDALKAAGKPVVVSMSSVAASGGYWISSSADKIIAQPTT 425 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 + GSIG+ + L+KLGV V ++P + + ++ Q VD+ Y Sbjct: 426 ITGSIGIFAILTTFEKSLEKLGVYSDGVGTTPF-SGVGVTRALPENVGKVFQLGVDNGYQ 484 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F+ LVS+ R++ ++ ++ GR+WTG +AK+ GL+D +G + +L Sbjct: 485 RFIGLVSKYRHMSLEQADKIAQGRVWTGKDAKERGLVDELGDFDTAITEAVSLAKV-DDY 543 Query: 248 KIKDWNPPKNYWFCDLKNLSIS 269 ++ P + K +S Sbjct: 544 QLVWMQQPLSPIQQFFKEMSGE 565 Score = 103 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 49/325 (15%), Positives = 111/325 (34%), Gaps = 39/325 (12%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + F K I +L + + + E + + G I + + Sbjct: 19 INFARKFILNLIFLLIVGAIIFAFSDNDDSAEKPEASALVLNLSGPIVEQKNYDNPLDSV 78 Query: 52 ----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVK 94 +++E I + D S T L+++ + P S I +AIQ+ K Sbjct: 79 ISDVMGQPPVEQNVLFDIVEAIRTATTDSSITGLVLNLKNMPETSLTKLRYIAKAIQEFK 138 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + + + Y ++ ++ I + + G Y K L+KL V+ Sbjct: 139 ASGKPVYAYGGHYSQSQYYLASYADKIFMSPDGGIMLTGYGTYTLYYKTLLEKLDVTTHV 198 Query: 155 VKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------T 204 + K+ P+ ++ A + +D + + V+++RNI Sbjct: 199 FRVGTYKSFVEPYIRDGMSAAAKEANTVWLDQLWDAYTSDVAKNRNIDAKSLTPEMNSFV 258 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI---RKIKDWNPPKNYWFC 261 L+ +KK+GL+D + + ++ Q L D ++I ++ Sbjct: 259 EQLTAVNGDFAQLSKKMGLVDQLVTRPQLSQILIKEFGDNGEHSFKQISYYDYLSMLVDD 318 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQG 286 + + +++ + ++ QG Sbjct: 319 QKPSNNKVAVVVASGAIVDGKSSQG 343 >gi|196231671|ref|ZP_03130528.1| signal peptide peptidase SppA, 36K type [Chthoniobacter flavus Ellin428] gi|196224143|gb|EDY18656.1| signal peptide peptidase SppA, 36K type [Chthoniobacter flavus Ellin428] Length = 345 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 78/282 (27%), Positives = 136/282 (48%), Gaps = 16/282 (5%) Query: 21 TVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ----------ELIERIERISRDDSATALI 70 VV + + +A I +RG I S+ +L ++E+ + D+ A++ Sbjct: 52 VVVDAKPTKDGKVTDSKIALIYLRGVISSSEPGALGESMVDDLKIQLEQAATDEKVKAVV 111 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVK-----NRKPVITEVHEMAASAGYLISCASNIIVAAE 125 + + SPGG A ++I+ A++KV+ +KPV+ + +AAS GY ISCA ++A E Sbjct: 112 LYVDSPGGEVTASDSIYDAVRKVREGGYGKKKPVVVYMGSLAASGGYYISCAGTWLMANE 171 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 T+L GSIGV+ Q K KLG+ + KS K S ++ + +Q +V + Sbjct: 172 TTLTGSIGVIMQSLNYKELFGKLGLQTVTFKSGQFKDMLSGSRDLTQEERDYIQKMVMDT 231 Query: 186 YHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 Y FV +V++ R + D+ L+DGR+ +G +A LI+ G E+ + LG + Sbjct: 232 YGKFVGIVAKERKLNEDELRHGLADGRVISGKDALAAKLINATGEVEDAYAKAMELGNAR 291 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 I+ +P K L S + +E + + K++ Sbjct: 292 GATVIRYESPFKLGKLFRLLGQSEKTSVEVNLANTIRPKLEA 333 >gi|153000814|ref|YP_001366495.1| signal peptide peptidase SppA [Shewanella baltica OS185] gi|151365432|gb|ABS08432.1| signal peptide peptidase SppA, 67K type [Shewanella baltica OS185] Length = 615 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 64/268 (23%), Positives = 120/268 (44%), Gaps = 14/268 (5%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 V I G I + E + + D AL++ + SPGGSA+A Sbjct: 322 VEQDSVGIIVASGTILNGTQPAGQIGGESTAELLRKARFDKHVKALVLRVDSPGGSAFAS 381 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + + +K KPV+ + +AAS GY IS +++ I A T+L GSIG+ + Sbjct: 382 EQIRQELLALKAAGKPVVVSMGSLAASGGYWISASADYIFATPTTLTGSIGIFGMITTFE 441 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L +GV V +S + ++P+ ++Q ++ Y F+ LV++ R + + Sbjct: 442 DSLASIGVHTDGVSTSEWAGLSVTRT-LSPQVEAIIQRHIERGYLDFISLVAKERKMTIE 500 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFC 261 + ++ GR+W+G +A ++ L+D +G +E L ++ + F Sbjct: 501 QVDKIAQGRVWSGKKALELSLVDELGDLDEAIAKAAKLADMTLFDTRVIEQELTPEQRFM 560 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289 S+SS L ++ + + ++ + A Sbjct: 561 QQMFASVSSYLPASLS--QSSMLEQMLA 586 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 34/273 (12%), Positives = 88/273 (32%), Gaps = 36/273 (13%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51 +K+ + ++ ++ S ++ + + G I D + Sbjct: 23 RKLILNLIFFGILAAIIISIGSSEDIQVEDNSALVLNLAGSIVDQKQQVDPLEAAFKQGN 82 Query: 52 -----------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRKPV 99 +++ I ++D + L++ ++I A+ + K Sbjct: 83 NGNADGEILLADVLYVINNAAQDQRISTLVLDLADLKRAGISKLQSIGDALNRFKESGKK 142 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 + + Y ++ ++ I V G+ Y K LDKL + + Sbjct: 143 VVAIGNYYEQNQYFLASFADTIYLNPQGGVSLDGLSMYNQYFKSALDKLKIKAHIFRVGT 202 Query: 160 MKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSD 209 K+ P+ +++ A + ++ + + + V+ +RNI + L Sbjct: 203 FKSAVEPYMRDDMSDAAREASSALLADVWQSYTQTVAGNRNIEPNSLVPDATTYLAELDK 262 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + A A + +D + E+ Q++ Sbjct: 263 ANGDSAAMAINMKWVDSLATTEDFRQTMLETVG 295 >gi|124515256|gb|EAY56766.1| Signal peptide peptidase, SppA [Leptospirillum rubarum] Length = 331 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 62/279 (22%), Positives = 116/279 (41%), Gaps = 19/279 (6%) Query: 34 NSPHVARIAIRGQIEDSQE---------------LIERIERISRDDSATALIVSLSSPGG 78 + + I G I D + + + + D +++ + S GG Sbjct: 46 ARDKLLLVPINGFIGDQTSRGIPFLGGRDDTVTRIRATLRKAAEDPRVRGIVLLIDSAGG 105 Query: 79 SAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 S A + ++ +++ K + PV+ + +M AS Y +S A++ + TS+VGSIGV+ Sbjct: 106 SVTASDRVYHLVREFKRKSGIPVMAMIGDMGASGAYYVSVAADEVWTHPTSVVGSIGVVI 165 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + + K+GV +++ S K SP + K + Q ++ Y F +VS + Sbjct: 166 FNVGITGLMKKIGVEDRTLSSGAEKEMGSPLKPMTDKDRSLFQGLISDLYTQFFDIVSRN 225 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP- 255 R I D L+DGRI+T +A K L+D +G ++++ + L L + I+ P Sbjct: 226 RQIAPDILKPLADGRIFTARQALKNHLVDRIGYRDDLIRHLKRLMHVKEFEVIRYREPFL 285 Query: 256 -KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 F + M + +W+P Sbjct: 286 AATGIFGSESPADSPLASAGRLAGMMTKSGPTMLYLWDP 324 >gi|119900256|ref|YP_935469.1| putative protease IV [Azoarcus sp. BH72] gi|119672669|emb|CAL96583.1| putative protease IV [Azoarcus sp. BH72] Length = 613 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 127/266 (47%), Gaps = 13/266 (4%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVS 72 FS + + VA + +G I D ++ L +I D++ A+++ Sbjct: 312 AYLFSLRAARPRHRDRVAVLVAQGAIADGEQPASAVGGDTLARQIREAREDNAVKAVVLR 371 Query: 73 LSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 + SPGGSA+A E I R ++ + KPV+ + +AAS GY I+ ++ I A T++ GS Sbjct: 372 IDSPGGSAFASEVIRRELELTRRAGKPVVASMSSVAASGGYWIAVGADEIWALPTTVTGS 431 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IG+ P V L +LGV + V + P+ P P ++P + MQ ++ Y F+ Sbjct: 432 IGIFAMLPEVSGPLARLGVHVDGVATGPLAGMPDPRRALDPGMAKAMQLGIEHGYRRFLE 491 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI---RK 248 +V+E R + + ++ GR+WTG A ++GL+D +GG + ++ + Sbjct: 492 VVAEGRRMKVGEVDAVARGRVWTGETALELGLVDQLGGVDAAVRAAAKRAGLEHYSVQWP 551 Query: 249 IKDWNPPKNYWFCDLKNLSISSLLED 274 + + + + L ++ + + L Sbjct: 552 VTEVSAGRVLLQRLLADVGLDAALAA 577 Score = 86.2 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 73/206 (35%), Gaps = 11/206 (5%) Query: 52 ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 +L+E I + D+ AL++ G + A+ K + E Sbjct: 96 DLLEAIRAAADDERIGALVIETDDLAGAGLSKLGELREAVVAFKASGKPVLARGERFTQG 155 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168 Y ++ ++ + A + G+ Y K LD LG+ + + K+ PF + Sbjct: 156 QYYLATVADEVHLAPDGFLLLQGLARHLTYFKDALDSLGIKLHVFRVGEYKSFSEPFTRN 215 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV--------LSDGRIWTGAEAKK 220 +++ + + +D++D + V+ +R + + L+ A+ Sbjct: 216 DMSDEDREASRDLLDGLWGAMRGEVARARKLTPEALDRYVLGFADVLAQAGGDPARAAQA 275 Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSI 246 GL+D + ++E L Sbjct: 276 AGLVDRLSTRDEWRAHLIERVGADKA 301 >gi|237809431|ref|YP_002893871.1| signal peptide peptidase SppA, 67K type [Tolumonas auensis DSM 9187] gi|237501692|gb|ACQ94285.1| signal peptide peptidase SppA, 67K type [Tolumonas auensis DSM 9187] Length = 616 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 71/269 (26%), Positives = 117/269 (43%), Gaps = 13/269 (4%) Query: 33 DNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAG 83 N P V + G I D + L ++I D AL++ + SPGGSA+A Sbjct: 322 ANKPQVGLLVAAGAIVDGMSQPGTINGEALAKQIRTAMYDSKIKALVLRIDSPGGSAFAA 381 Query: 84 EAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I A+ K KP++ + MAAS GY I+ ++ I A ++ GSIGV + + Sbjct: 382 EQIRTALLAFKASGKPLVVSMGSMAASGGYWIAADADKIYAEPVTITGSIGVFGMFLTAE 441 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+ LGV + ++ SP + Q++Q V+++Y F+ LV+E R + + Sbjct: 442 KALNSLGVHTDGLGTTDF-TGISPTQPLPDHIKQIVQLNVENTYQRFLDLVAEGRGMTPE 500 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI--RKIKDWNPPKNYWF 260 + ++ GR+W G +AKK+GL+D +G + L I+ K+ Sbjct: 501 QVDKVAQGRVWIGTDAKKLGLVDELGSLSDASAEAGRLAKLTDYQLTLIEPELSAKDKLL 560 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + N S L W+ Sbjct: 561 REFFNQSAEILPSSVTHSALGKLAIQWWS 589 Score = 84.7 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 49/344 (14%), Positives = 113/344 (32%), Gaps = 58/344 (16%) Query: 1 MEFVLKKIKTRY-----------------VMLSLVTLTVVYFSWSSHVEDNSPHVARIAI 43 M F+ + IK + + +++V L V+ + E + + Sbjct: 1 MRFLFRSIKWFFHSLWRALNFTRLLILNLIFIAIVLLIVIGLREEAPEEAIDEGALVLDL 60 Query: 44 RGQIE------------------DSQ--------ELIERIERISRDDSATALIVSL-SSP 76 G++ DS +++ I+ +D +++ + Sbjct: 61 SGKLVEQPTTPNPADQLIENWLSDSDKPREIAVGDVVYVIQEAKKDPRVKGIVLKTVNLE 120 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 S I +A+ + K K + V YL++ ++ I+ V G+ Sbjct: 121 TTSIGKLLTITQALDEFKQSKKPVVAVGNFYQQHQYLLAAHADTILLNPAGAVTIQGLGL 180 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVS 194 Y K L+K ++ + K+ P+ +++ +A + Q + + + +V S Sbjct: 181 YNLYFKSALEKFNLTPHVFRVGTYKSFVEPYIRDDMSAEAREANQRWLGAVWQEYVTNAS 240 Query: 195 ESRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS- 245 ++R+IP D L+ A + GL+D + +E+ ++ Sbjct: 241 KARHIPADAIAPTKEQVLERLTKAEGNAAQYALEQGLVDQLATYDEMTDTIRDFAGSDEH 300 Query: 246 ---IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + D+ + + N LL ++ G Sbjct: 301 DFRSIAMSDYLQSLPPRYQPVANKPQVGLLVAAGAIVDGMSQPG 344 >gi|168244402|ref|ZP_02669334.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449756|ref|YP_002045301.1| protease 4 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408060|gb|ACF68279.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336810|gb|EDZ23574.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 618 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 72/268 (26%), Positives = 122/268 (45%), Gaps = 14/268 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D +A I G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ L +GV V +SP+ S ++P+ QMMQ ++ Y F+ LV+++R Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L + + Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556 Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284 + +++ S ++L +TI M + Sbjct: 557 LDMVMDSMTGSVRAMLPETIQAMLPAPL 584 Score = 100 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S+ E + + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90 +++ I + D + T +++ L + G+ I +A+ Sbjct: 79 ALGRQLFGASSDRLQENSMFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ VS +R I + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + DG T A L+D + +V ++L Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300 >gi|114047564|ref|YP_738114.1| signal peptide peptidase SppA, 67K type [Shewanella sp. MR-7] gi|113889006|gb|ABI43057.1| signal peptide peptidase SppA, 67K type [Shewanella sp. MR-7] Length = 614 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 65/270 (24%), Positives = 120/270 (44%), Gaps = 14/270 (5%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 V I G I E + + D AL++ + SPGGSA+A Sbjct: 322 VEQDSVGIIVASGTILNGSQPAGQIGGDSTAELLRKARFDKHIKALVLRVDSPGGSAFAS 381 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + + +K KPV+ + +AAS GY IS +++ I A T+L GSIG+ + Sbjct: 382 EQIRQELLALKAAGKPVVVSMGSLAASGGYWISASADYIFATPTTLTGSIGIFGMITTFE 441 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L LG+ V +S + ++P+ ++Q ++ Y F+ LV++ R + + Sbjct: 442 DSLASLGIHTDGVSTSEWAGLSVTRT-LSPQIESVIQRHIERGYLDFISLVAKERKMTLE 500 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFC 261 + ++ GR+W+G +A ++GL+D +G ++ L ++ + F Sbjct: 501 QVDRIAQGRVWSGKKALELGLVDELGDIDQAVAKAAKLADLSLFDTRLIEQELTPEQRFV 560 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 S+S+ L ++ T ++ + A W Sbjct: 561 QQMFASVSAYLPASLS--HSTLLEQMLAQW 588 Score = 89.3 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 34/277 (12%), Positives = 91/277 (32%), Gaps = 36/277 (12%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------- 51 ++K + + + ++ S ++ + + G I D + Sbjct: 22 IRKFILNLIFFGFLAIILITIGSSEDIQVEDNSTLVLNLAGSIVDQKQQVDPIEAALKQG 81 Query: 52 ------------ELIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVKNRKP 98 ++I I+ + D+ + +++ L+ ++I A+ + K Sbjct: 82 NNGSSDGEILLADIIYVIDNATHDNRISTIVLDLAELKRAGISKLQSIGDALNRFKESGK 141 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 + + Y ++ ++ I V G+ Y K L+KL + + Sbjct: 142 KVVAIGNYYEQNQYFLASFADTIYLNPQGSVSLDGLSMYNQYFKSALEKLKIKAHIFRVG 201 Query: 159 PMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLS 208 K+ P+ +++ A + ++ + + + V+E+R I + L Sbjct: 202 TFKSAVEPYMRDDMSDAAREASSALLADVWQSYTQTVAENRQIDANTLVLDSANYLAQLD 261 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 + A A + +D + EE + + + Sbjct: 262 KAEGDSAAMAINMKWVDTLATDEEFRKVMLDSVGKEK 298 >gi|86148498|ref|ZP_01066787.1| protease IV [Vibrio sp. MED222] gi|85833738|gb|EAQ51907.1| protease IV [Vibrio sp. MED222] Length = 616 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 73/274 (26%), Positives = 125/274 (45%), Gaps = 16/274 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 + S VA I G I D + + DD A+++ + SPGGS Sbjct: 318 PDLTSESHDVAVIVASGAIMDGKQPRGTVGGDTTAALLRQARNDDKVKAVVLRVDSPGGS 377 Query: 80 AYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A+A E I I+ + + KPV+ + +AAS GY IS ++ I+A T+L GSIG+ Sbjct: 378 AFASEVIRNEIEAIKQAGKPVVVSMSSLAASGGYWISMGADKILAQPTTLTGSIGIFSVI 437 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L+ +GV V +SP + ++ A Q +++ Y F+ LV E+R Sbjct: 438 TTFEKGLNDIGVYTDGVGTSPFSGLGIT-TGLSDGAKDAFQMGIENGYRRFISLVGENRG 496 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256 + D ++ GR+WTG +A + GL+D +G ++ + +L + +I +++ Sbjct: 497 MEVDTVDKIAQGRVWTGQDAIEKGLVDEIGDFDDAITAAASLAELETYNIYWVEEPLSAT 556 Query: 257 NYWFCDLKNL---SISSLLEDTIPLMKQTKVQGL 287 + + N SI ++ IP Q Q L Sbjct: 557 ELFIQEFMNQVQVSIGLDIQSMIPSSLQPITQQL 590 Score = 94.7 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 96/282 (34%), Gaps = 37/282 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + FV + + +LS+ + VYF S ++ + + G I + Sbjct: 19 ITFVRLALVNLFFLLSIAIIYFVYFHSDTTQPTVPQESALVLNLSGPIVEQSRYINPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 +++E I DD T ++++ P + I +A+ + Sbjct: 79 VTGSLLGKDLPKENVLFDIVETIRYAKDDDKVTGIVLALKELPETNLTKLRYIAKALNEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K I V + + Y ++ + + + V G + K L+KL V+ Sbjct: 139 KATGKPIYAVGDFYNQSQYYLASYATKVFLSPDGGVLLKGYSAYSLFYKTLLEKLDVNTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL------ 205 + K+ PF +++ A + + + +V VS +R I Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESASRWLGQLWGAYVDDVSNNRQIDAKTLNPSMDSF 258 Query: 206 --VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 L A+K+GL+D + +++V L + Sbjct: 259 LKDLESVDGDIAKLAEKLGLVDELATRQQVRLELADVFGSDG 300 >gi|332703631|ref|ZP_08423719.1| signal peptide peptidase SppA, 36K type [Desulfovibrio africanus str. Walvis Bay] gi|332553780|gb|EGJ50824.1| signal peptide peptidase SppA, 36K type [Desulfovibrio africanus str. Walvis Bay] Length = 322 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 72/285 (25%), Positives = 132/285 (46%), Gaps = 24/285 (8%) Query: 31 VEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSPG 77 P V I +RG +E QE + ++++ + D S AL++++ SPG Sbjct: 38 EGTAEPKVVLITVRGTLETGPDEETFREAPGIVQETVSQLDKAAADPSVKALVLAVDSPG 97 Query: 78 GSAYAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 G+A A + ++ + K + + + E+AAS GY IS +++IVA T++ GS+G + Sbjct: 98 GTATASDILYGELLAWKEKTKAKLVVCMLEVAASGGYYISLPADVIVAHPTTITGSVGTI 157 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 F P V +DK+GV + KS K SPF + + + V+M +V F+ LV++ Sbjct: 158 FIRPKVVGLMDKIGVDVDVTKSGVNKDMGSPFRQPSREEVEMFDGIVGDMNSRFLSLVAK 217 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP- 254 RN+ + +S R++T +A+KVGL+D +G + + ++ + Sbjct: 218 HRNLSDENMRQVSTARVFTANQARKVGLVDEIGNIDFAVATARKQAGLPENARLVVYRRT 277 Query: 255 ------PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 P N + + L L+++ G + +W P Sbjct: 278 EYADDNPYNSLLTRMASQPTLVDLGAAGDLLRRR--TGFYYLWEP 320 >gi|269958578|ref|YP_003328365.1| putative serine protease [Anaplasma centrale str. Israel] gi|269848407|gb|ACZ49051.1| putative serine protease [Anaplasma centrale str. Israel] Length = 293 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 87/264 (32%), Positives = 148/264 (56%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSAT 67 +L L+ V Y + N +VAR+ I G+I S+ + R++ DS Sbjct: 24 FFFVVCLLLLIVGQVDYSRLVGTLRRNHDYVARVRISGEISRSRAREAMMARLAESDSVK 83 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 AL++ + SPGG+ EA+++ I+++ +KPV+ + +AAS GY+ + A++ +VA + Sbjct: 84 ALVLRIDSPGGTVGDSEALYQQIREIALKKPVVAVLGNIAASGGYMAAIAADHVVARHGT 143 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 + GSIGV+ QY V KLG+++KS+K++P+K+ SP E++P+ ++Q VVD + Sbjct: 144 ITGSIGVISQYIGVAEVAGKLGITLKSIKTAPLKSNMSPLEELSPEGESIIQGVVDDFHV 203 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 +F LV+E R + DK V+SDGRI+TGA+A +VGL+D +GG++E + L Sbjct: 204 FFTDLVAERRGLAPDKVSVVSDGRIYTGAQALQVGLVDAIGGEKEALEWLKTQRDVDVRV 263 Query: 248 KIKDWNPPKNYWFCDLKNLSISSL 271 + L + +I L Sbjct: 264 VKDVDYQRIDSSLPALFSSAIQHL 287 >gi|86149662|ref|ZP_01067892.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597632|ref|ZP_01100865.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. jejuni 84-25] gi|218561753|ref|YP_002343532.1| protease [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839930|gb|EAQ57189.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. jejuni CF93-6] gi|88189936|gb|EAQ93912.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. jejuni 84-25] gi|112359459|emb|CAL34242.1| protease [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925364|gb|ADC27716.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. jejuni IA3902] Length = 298 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 66/275 (24%), Positives = 130/275 (47%), Gaps = 2/275 (0%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64 +K I T + L+ + + S++ N ++ RI ++G+I DS ++E+I D Sbjct: 15 IKFINTYFKTFVLLLIVIWILIPSANSSSNLANLERIDLKGEIFDSSAVLEKIINAKNDS 74 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 + ++ + SPGG+ + AI+ +K +KPV+ AS YL +N I+A Sbjct: 75 NIKGVLFVIDSPGGAFAPSMELALAIKDLKIKKPVLVYASGTMASGSYLAGVGANKILAN 134 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 S +GSIGV+ Q + +KLG+ +++++ K+ + N +Q ++D Sbjct: 135 PASFIGSIGVIMQGADLSGLANKLGIKEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQ 194 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 SY F V++ R + +K ++ R++ A+AK++GLID + E + L L Sbjct: 195 SYDLFTGFVAKERALDLNKKDQWANARVFLAAKAKELGLIDELSNYENAKKELEKLANVS 254 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 + + + + L+ + S + + I + Sbjct: 255 N--PVWKEEDKIDKFLNRLEGQTSSLISKSLIEIA 287 >gi|313672173|ref|YP_004050284.1| signal peptide peptidase sppa, 36k type [Calditerrivibrio nitroreducens DSM 19672] gi|312938929|gb|ADR18121.1| signal peptide peptidase SppA, 36K type [Calditerrivibrio nitroreducens DSM 19672] Length = 284 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 133/290 (45%), Gaps = 14/290 (4%) Query: 4 VLKKIKTRYVMLSLVTLT--VVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERIS 61 ++K + ++L + VY N + + + G I +S LIE++++ Sbjct: 3 IIKFLFKFLIILLIAGFVGRAVYLLNYKTPVINKKMIVLLDLEGIILESDTLIEKLKKYE 62 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 +D + +I+ ++SPGG+ + I+R I+++ KPV + +AAS GY ++ A + I Sbjct: 63 KDSNVVGVILRINSPGGAVAPSQEIYRFIKRM--SKPVYASMSTVAASGGYYVASACDRI 120 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 A ++ GSIGV+ ++ + DK+GV +++KS K S + + +++ Sbjct: 121 YAMPGTITGSIGVIMKFTDLSKIYDKIGVRTETIKSGKFKDIGSTTRSMTEEEKSILKQS 180 Query: 182 VDSSYHWFVRLVSESRNI-PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 VD Y+ F+ + R ++ L +DGRI TG EAK + L+D +G E+ ++ + Sbjct: 181 VDDVYNQFIEDILSKRTFLNKEELLKYADGRIITGREAKNLKLVDKLGSYEDAYEDMKKD 240 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + + L + S++ E + G + Sbjct: 241 KNTLDAELFI--PKDEKTFLRKLIEETRSTIKEVK-------ALNGPLYL 281 >gi|119897908|ref|YP_933121.1| peptidase [Azoarcus sp. BH72] gi|119670321|emb|CAL94234.1| conserved hypothetical peptidase [Azoarcus sp. BH72] Length = 303 Score = 132 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 59/282 (20%), Positives = 123/282 (43%), Gaps = 14/282 (4%) Query: 5 LKKIKTRYVMLSLVTLTVVYFS------WSSHVEDNSPHVARIAIRGQI-----EDSQEL 53 ++ + +L+ + L V+ + + + + A +++ G I ++ + Sbjct: 16 RRRWSVFFRLLTFIYLGVILWKVADWGEPAEALAPAGGYTAMVSVEGVIDSGSEASAERV 75 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV---ITEVHEMAASA 110 I + D + +++ ++SPGGS I I +++ +P + V +M AS Sbjct: 76 IGALRSAYDDKAVRGVVLRINSPGGSPVQAGMINDEIYRLRGERPDLPVVAVVEDMCASG 135 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 GY ++ A++ I+ + SLVGSIGVL ++KLGV + + + K PFS Sbjct: 136 GYYVAAAADKIMVDKASLVGSIGVLMDGFGFVGAMEKLGVERRLLAAGANKGFLDPFSPQ 195 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++D + F+ +V + R + L G +WTGA + ++GL D G Sbjct: 196 RETQTAHARGLLDDIHRQFIDVVRKGRGPRLKEGPELFSGLVWTGARSVELGLADGYGTV 255 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 + V + ++ + + + + F S+++ L Sbjct: 256 DSVARDVFQAEEVRDFTETRSFAERFAQRFGAGVTESLATAL 297 >gi|326424138|ref|NP_761927.2| signal peptide peptidase SppA, 67K type [Vibrio vulnificus CMCP6] gi|319999523|gb|AAO11454.2| signal peptide peptidase SppA, 67K type [Vibrio vulnificus CMCP6] Length = 616 Score = 132 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 64/274 (23%), Positives = 126/274 (45%), Gaps = 13/274 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 ++ + + + N+ +A + G I D + + + DD A Sbjct: 307 ISYYDYRATMHDNFDVNADDIAVVVASGTIMDGQQPRGTVGGDTVAGLLRQARNDDKVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I +Q + KP++ + +AAS GY IS +++ I+A T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEVQALKDAGKPIVVSMSSLAASGGYWISMSADKIIAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + +KLG+ V +SP E + ++ A Q Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGFNKLGIYTDGVGTSPFSGEGIS-TGLSKGASQAFQMGIEHGYQ 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI- 246 F+ LV ++R++ D ++ GR+WTG +A + GL+D +G ++ + ++ Sbjct: 486 RFISLVGDNRDLSLDAVDKVAQGRVWTGYDALQHGLVDQIGDFDDAVAEAAKMAQLENYN 545 Query: 247 -RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 +++ P + + S+ D ++ Sbjct: 546 LYWVEEPLSPTEQFIQEFMKQVKISMGVDIQSIL 579 Score = 95.4 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 56/295 (18%), Positives = 104/295 (35%), Gaps = 40/295 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSS-HVEDNSPHVARIAIRGQIEDSQ-------- 51 + FV + +LS+ + VYF + P + + G I + Sbjct: 19 ITFVRLALTNLIFLLSVALVYFVYFYGHDTQPQVEQPSALVLNLSGPIVEQSLYINPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93 ++++ I D+ T L++SL P + I +A+ + Sbjct: 79 FTSSLFGEEIPKENVLFDVVDTIRYAKDDEKITGLVLSLRDMPETNLTKLRYIAKALNEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K I V + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 139 KASGKPIYAVGAFYNQSQYYLASYADKIYLAPDGGVMLKGYSAFNLYYKTLLEKLDVTTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV----- 206 + K+ PF +++P A + + + FV V+ +RNI Sbjct: 199 VFRVGTYKSAIEPFVRDDMSPAAKESATRWLTQLWGAFVDDVANNRNIDPKTLNPSMEEF 258 Query: 207 LSDGRIWTGAEA---KKVGLIDVVGGQEEVWQSLYAL---GVDQSIRKIKDWNPP 255 LS + G A K+GL+D + ++++ L D S + I ++ Sbjct: 259 LSQLKSVNGDLAALSIKLGLVDELATRQQLRAQLAEKFGASGDDSYKAISYYDYR 313 >gi|302878040|ref|YP_003846604.1| peptidase S49 [Gallionella capsiferriformans ES-2] gi|302580829|gb|ADL54840.1| peptidase S49 [Gallionella capsiferriformans ES-2] Length = 313 Score = 132 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 62/290 (21%), Positives = 119/290 (41%), Gaps = 14/290 (4%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-----ELIERIE 58 + K+ T + ++ + + +F S H A + ++G I LI ++ Sbjct: 30 IFFKVLTFGYLFVILFVLMGWFDKSETALSTGKHTALVDMQGVIAADSAASADNLIPGLQ 89 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLIS 115 +D +I+ ++SPGGS I I++++ + P I V ++ AS GY ++ Sbjct: 90 AAFKDKGTQGVILRINSPGGSPVQAGQINDEIRRLRVKYPAIPLYVVVEDICASGGYYVA 149 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + SL+GSIGVL ++KLGV + V + K PFS V P Sbjct: 150 AAADKIFVDKASLIGSIGVLMDGFGFTGTMEKLGVERRLVTAGSNKGFMDPFSAVRPDQQ 209 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 + + ++ + F+ +V + R +T G +W G ++GL D G E V + Sbjct: 210 EYAKQMLAQIHQQFIDVVKQGRGKRLKETPDTFSGLVWNGQAGIEMGLADGYGSVESVAR 269 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 + ++ D+ + + K + ++ Sbjct: 270 DVIK------AEEVVDFTVKEGFADRLAKRFGAGVASAISFSTQSGVTLR 313 >gi|291614214|ref|YP_003524371.1| peptidase S49 [Sideroxydans lithotrophicus ES-1] gi|291584326|gb|ADE11984.1| peptidase S49 [Sideroxydans lithotrophicus ES-1] Length = 317 Score = 132 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 61/248 (24%), Positives = 104/248 (41%), Gaps = 14/248 (5%) Query: 30 HVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 + H A I + G I LI ++ +D + +I+ ++SPGGS Sbjct: 58 DGSLSGKHTALIDLTGVISSDSNANADNLIGSLQDAFKDKNTVGVILRINSPGGSPVQAG 117 Query: 85 AIFRAIQK---VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + I++ + P+ V +M AS GY I+ A++ I + S+VGSIGVL Sbjct: 118 LVNDEIRRQRKLHPDIPLYVVVEDMCASGGYYIAAAADKIYVNKASIVGSIGVLMDGFGF 177 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + KLGV + + K PFS +NPK + +++ + F+ +V + R Sbjct: 178 TGTMQKLGVERRLFTAGENKGFMDPFSPLNPKHEAFTRKMLEDIHMQFIDVVKQGRGKRL 237 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 +T G WTG +A ++GL D G + V + + I D+ + + Sbjct: 238 KETPETFSGLFWTGDKAIEMGLADEYGSVDSVARDVLK------EENIVDFTTHEGFADR 291 Query: 262 DLKNLSIS 269 K Sbjct: 292 LAKKFGAG 299 >gi|259908290|ref|YP_002648646.1| protease 4 [Erwinia pyrifoliae Ep1/96] gi|224963912|emb|CAX55416.1| Protease IV [Erwinia pyrifoliae Ep1/96] gi|283478224|emb|CAY74140.1| protease IV [Erwinia pyrifoliae DSM 12163] Length = 618 Score = 132 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 72/264 (27%), Positives = 118/264 (44%), Gaps = 14/264 (5%) Query: 33 DNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAG 83 + +VA I G I D +E I D A++ ++SPGGS A Sbjct: 323 SSDGNVAVILANGAIMDGEEAPGSVGADTTALEIRAARLDPKIKAIVFRVNSPGGSVTAS 382 Query: 84 EAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + K KPV+ + MAAS GY +S +N I+A+ +L GSIG+ V+ Sbjct: 383 ETIREELAAAKEAGKPVVVSMGGMAASGGYWVSTPANYIIASPNTLTGSIGIFGVINTVE 442 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LD +GV V +SP+ + + P+ QMMQ +D Y F+ LV++SRN + Sbjct: 443 SSLDAIGVHTDGVATSPLADV-ASTKALPPEVQQMMQLSIDKGYQNFIGLVAKSRNKTSE 501 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + ++ G +WTG++AK GLID +G ++ L ++ + Sbjct: 502 EIDKIAQGHVWTGSDAKAKGLIDALGDFDDAVAKAAELAKLDK-PQLSWYQGEPGLLDML 560 Query: 263 LKNLSISSLLEDTIPLMKQTKVQG 286 + +S+ +P + + Sbjct: 561 FSQVDVSAH--AALPATLKAYLPA 582 Score = 94.7 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 96/279 (34%), Gaps = 40/279 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + +++L +V ++F + + + G + D Sbjct: 19 LNFVREFVLNLFLILLIVVALGLWFQLHNAGTPAATQKGALVVNLSGAVVDKPSVSNKFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 ++++ I + D + T +++ L G + I +A+ Sbjct: 79 KIGRQLLGASSGRLKENSLFDVVDAIRQAKDDTNITGMVLDLRHFAGGDQPSLQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ I E + A Y ++ +N I + V G Y K +DKL + Sbjct: 139 REFRDGGKPIFATGESYSQAQYYLASFANKIYLSPQGNVDLHGFATNRLYYKTLIDKLKI 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF ++P+A V + ++ +++ +R I + Sbjct: 199 SSHVFRVGTYKSAVEPFLRDSMSPEARDADGRWVGELWQNYLNMLAANRQITVVQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L T AK+ L+D + V L Sbjct: 259 QGVLNGLQKLGGDTAQYAKENKLVDELASSSRVEHELVK 297 >gi|328474533|gb|EGF45338.1| protease IV [Vibrio parahaemolyticus 10329] Length = 616 Score = 132 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 67/274 (24%), Positives = 124/274 (45%), Gaps = 13/274 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 ++ + + +A + G I D + + + D+ A Sbjct: 307 ISYYDYLATIRPDYTLANHDIAVVVASGAIMDGQQPRGTVGGDTVASLLRQARNDEKVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I ++ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEVEALKKAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + KLG++ V +SP + + ++ A Q Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGFSKLGINTDGVGTSPF-SGDGITTGLSEGASQAFQLGIEHGYK 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-- 245 F+ LV +R++ ++ ++ GR+WTG +A GL+D +G ++ + L Sbjct: 486 RFISLVGSNRDMTVEEVDKVAQGRVWTGQDALSFGLVDQMGDFDDAVELAAKLANVTDYG 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 I +++ P + + N SL D L+ Sbjct: 546 IYWVEEPLSPTELFLQEFMNQVKVSLGVDATSLL 579 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 40/284 (14%), Positives = 91/284 (32%), Gaps = 37/284 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + F+ + +L + + ++ + + G I + + Sbjct: 19 ITFIRLALANLIFLLMIAVFYFAFTYTGEGRPVIEKESALVMNLSGPIVEQRRYVNPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93 ++++ I D + L+++L P + I +A+ + Sbjct: 79 VAGSLLGNEMPKENVLFDIVDTIRYAKDDAKVSGLVLALRDLPETNLTKLRYIAKALNEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ + A V G Y K L+KL VS Sbjct: 139 KASGKPVYAVGDFYNQSQYYLASYADKVYMAPDGGVLIKGYSAYSMYYKTLLEKLDVSTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF +++ A + V + FV V+ +RNI + Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESATRWVTQLWSAFVDDVTTNRNINAKVLNPTMEEL 258 Query: 212 I--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 + A K+GL+D + ++++ Sbjct: 259 LTEMKSVDGDLAQLAVKMGLVDELATRQDIRTLFAKEFGSDGKD 302 >gi|229496545|ref|ZP_04390259.1| signal peptide peptidase SppA, 67K type [Porphyromonas endodontalis ATCC 35406] gi|229316442|gb|EEN82361.1| signal peptide peptidase SppA, 67K type [Porphyromonas endodontalis ATCC 35406] Length = 554 Score = 132 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 79/282 (28%), Positives = 136/282 (48%), Gaps = 14/282 (4%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------QELIERIERISRDDSATAL 69 VTL VY S + V + G+I + L+ R+ + + DD A+ Sbjct: 256 FVTLNRVYNSERRYDNSGDGTVQVLFAEGEITSGVEFGTITEALVGRLLKAADDDDIDAV 315 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 ++ ++SPGGS+Y + I+ A++ K++KP++ + + AAS GY ISCASN I A T++ Sbjct: 316 VLRVNSPGGSSYVSDQIWDAVRYTKSKKPIVVSMGDYAASGGYYISCASNYIFAEPTTIT 375 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIG+ +P K V+ VK++ + F + + +MQ ++ Y F Sbjct: 376 GSIGIFGLFPNFAGTAQKFSVTEDGVKTAKYADFGNVFRPMTDEERALMQAYIERGYDTF 435 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD------ 243 + V+E R + + +++ GR+WTG +A L+D +GG +E L Sbjct: 436 LSRVAEGRKLEKSQVDLVAQGRVWTGKQALARHLVDELGGLDEAIAKAAELANINTPSVW 495 Query: 244 -QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 +S R+ K N Y F L + L E+ I +K+ ++ Sbjct: 496 YESSRQDKFSNLVDRYLFEGSDKLVRNILTEEEIEALKKARI 537 Score = 82.4 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 37/254 (14%), Positives = 83/254 (32%), Gaps = 23/254 (9%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRG--QIEDSQEL-----------------IERIER 59 + VV V + + + +IE I I Sbjct: 4 FIAVVANQSHKSVSIPKESLLVVDLSSIKEIETDSPFDNFLGSKREKSLTLTEAIRSIRY 63 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119 + + + ++ + P + + + RA++ K + + + GY ++ ++ Sbjct: 64 AAENPRIEGIYLTSAMPEAGLASIDELRRALKDFKKSGKFVISYADQYSQKGYYLASVAD 123 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQM 177 I V G+ + K L+K GV+++ K K PF +++ Sbjct: 124 EIYLNPQGAVELDGMYVSNVFYKNALEKFGVTMQVFKVGTYKGAVEPFLLDKLSEPNRAQ 183 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR--IWTGAEAKKVGLIDVVGGQEEVWQ 235 + ++ ++ +S+ RNI D L D + E L+D + + EV + Sbjct: 184 ITSFTSELWNNMLQGISQERNIALDSLSRLVDRAPMFLSQQELVASKLVDKLCYEREVIK 243 Query: 236 SLYALGVDQSIRKI 249 + + Sbjct: 244 MFEDEYGIKEDHFV 257 >gi|271969371|ref|YP_003343567.1| signal peptide peptidase SppA, 67K type [Streptosporangium roseum DSM 43021] gi|270512546|gb|ACZ90824.1| signal peptide peptidase SppA, 67K type [Streptosporangium roseum DSM 43021] Length = 566 Score = 132 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 68/276 (24%), Positives = 119/276 (43%), Gaps = 25/276 (9%) Query: 34 NSPHVARIAIRGQI---------------EDSQELIERIERISRDDSATALIVSLSSPGG 78 VA + G I S + + RD+ A++ + SPGG Sbjct: 275 GEETVALVHGNGAIRLGRSGRSPLGGGSAMGSDTVCAALRAARRDEHVKAVVFRVDSPGG 334 Query: 79 SAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 S A +AI+R + + KP++ + ++AAS GY++S A++ IVA +L GSIGV Sbjct: 335 SYVASDAIWREVVLTRKAGKPIVVSMGDLAASGGYMVSMAADAIVAQPGTLTGSIGVFGG 394 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + L+K+GVS ++V S + + + +D Y FV V+E R Sbjct: 395 KAVIGGLLEKIGVSSETVGEGANAGMFSSTNAFSEAQWARVNAWLDRVYEDFVNKVAEGR 454 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 + ++ L+ GR+WTGA+A GL+D +GG ++ + ++ + Sbjct: 455 GLSRERAHELAKGRVWTGADAHAHGLVDELGGLQDALALARRKAGLAADAPVRAY----- 509 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 L+ L + ED + +++ W P Sbjct: 510 PRLSPLERLRPADSSEDRTAATARIRLEA----WGP 541 Score = 92.0 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 79/210 (37%), Gaps = 7/210 (3%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 +++ ++R +D ALIV + + + + +A+ + + + E Sbjct: 50 TSLTDVLSGLKRARKDSRVKALIVKIGTQPLGLAMVQDLRQAVIEFRAAGKLTVAFAETF 109 Query: 108 ASA-----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 Y + A + + VG GV + +++ L KLGV + + K Sbjct: 110 GEFGAGTVPYYLGSAFERVYLQPSGDVGLTGVAMEQRFLRGALGKLGVEYQMGQRHEYKT 169 Query: 163 --EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKK 220 + + M + +S V V+E R + K L D + GAEA + Sbjct: 170 AANTFTQDHMTDPHRESMGRITESVTEQIVAGVAEGRGLEPTKVRKLIDEGPFIGAEAVE 229 Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 GL+D + ++EV+ + D ++ Sbjct: 230 AGLVDRMAYRDEVYDEVKQAVGDDALLLYV 259 >gi|157370962|ref|YP_001478951.1| protease 4 [Serratia proteamaculans 568] gi|157322726|gb|ABV41823.1| signal peptide peptidase SppA, 67K type [Serratia proteamaculans 568] Length = 618 Score = 132 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 68/271 (25%), Positives = 119/271 (43%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 D +A I G I D + + D + A+I ++SPGGS Sbjct: 319 KPTPDQGGKIAVIFANGAIMDGPQTPGTVGGDTTAAELRQARLDPAIKAVIFRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + V+ KPV+ + MAAS GY +S ++ I+A+ ++L GSIG+ Sbjct: 379 VSASEVIRSELAAVRAAGKPVVVSMGGMAASGGYWVSTPADYIIASPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + LD +GV V +SP+ + P+ QMMQ ++ Y F+ LV++SR Sbjct: 439 NTYEQTLDSIGVHTDGVATSPLADLAVT-KALPPEFSQMMQLNIEKGYQNFIDLVAKSRK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + + ++ G +W G++AK GL+D +G ++ + L ++ + + Sbjct: 498 MTPQQVDQIAQGHVWLGSDAKTNGLVDQLGDFDDAVKKAAELAQL-KQWQLNWFVDTPSL 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 L +S + +P Q+ + A Sbjct: 557 TDMVLSQFGVS--IHAMLPAAIQSMLPAPLA 585 Score = 85.4 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 84/237 (35%), Gaps = 17/237 (7%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASA 110 ++++ I + D + T +++ L+ G+ + I +A+++ ++ I + + Sbjct: 99 DVVDSIRKAKDDKNITGMVLQLNDFAGADQPSLQYIGKALREFRDSGKPIFAIGDSYNQT 158 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FS 168 Y ++ +N + + V G Y K L+KL V+ + K+ P Sbjct: 159 QYYLASYANKVYLSPQGAVDLHGFATNNLYYKSLLEKLKVTTNIFRVGTYKSAVEPLIRD 218 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKK 220 +++P A + + + ++ V+ +R I + + T A Sbjct: 219 DMSPAAREADSRWIGGLWQNYLDTVAANRQITAQQLFPGAAGVLSGMQAAGGDTAKYALD 278 Query: 221 VGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 L+D + + + L D + I D+ P + ++ Sbjct: 279 NKLVDELASRTVIENQLIKTFGWDKQANDFNATSIYDYQPKPTPDQGGKIAVIFANG 335 >gi|312882482|ref|ZP_07742223.1| protease IV [Vibrio caribbenthicus ATCC BAA-2122] gi|309369882|gb|EFP97393.1| protease IV [Vibrio caribbenthicus ATCC BAA-2122] Length = 616 Score = 132 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 74/273 (27%), Positives = 134/273 (49%), Gaps = 13/273 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSL 73 S + ++ N+ +A + G I D + + + D A+++ + Sbjct: 312 YLTSMAPKLQYNNDDIAVVVASGAIMDGSQPRGTVGGDTVAALLRQARNDKKVKAVVLRV 371 Query: 74 SSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 SPGGSA+A E I +Q +K KPV+ + +AAS GY IS +++ IVA T+L GSI Sbjct: 372 DSPGGSAFASEVIRNEVQALKAEGKPVVVSMSSLAASGGYWISMSADSIVAQPTTLTGSI 431 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 G+ + L+KLG+ V +SP + + ++ A Q +Q +D Y F+ L Sbjct: 432 GIFSIITTFEKGLNKLGIYTDGVGTSPF-SGVGLTTGLSEGASQALQMGIDHGYQRFISL 490 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI--RKIK 250 VS+SR +P DK +++GR+WTG +A K+GL+D +G ++ L + ++ Sbjct: 491 VSQSRQLPIDKMEGIAEGRVWTGEDALKLGLVDKIGDFDDAVALAAQLAKLEKYNLYWVE 550 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 + P + + N ++ D + ++ ++ Sbjct: 551 EPLSPAQEFIKNFLNQVSVAMHIDPLAILPESM 583 Score = 92.0 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 42/291 (14%), Positives = 102/291 (35%), Gaps = 39/291 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVED-NSPHVARIAIRGQIEDSQ-------- 51 + F+ + + +L+L + VY S + + + + G I + Sbjct: 19 ITFIRRALVNMIFLLTLGAIYFVYTSADAPKKSVPEKSALVLNLSGPIVEQSSYINPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93 ++++ I D ++++L + I +AI + Sbjct: 79 VTGSILGQDMPHENLLFDIVDTIRHAKEDPKIGGIVLALRDLAPTNLTKLRYIAKAINEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K+ + V +M + Y ++ ++ + A V G Y K L+KL V+ Sbjct: 139 KSSGKPVYAVGDMYNQSQYYLASYADKVYLAPDGAVMLKGYSAYSMYYKTLLEKLDVNTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL------ 205 + K+ PF +++P A + + + +V V+ +R + + Sbjct: 199 VFRVGTYKSAVEPFLRDDMSPAAKETTSRWLSQLWDAYVDDVANNRQLAPETLKLNMEEF 258 Query: 206 --VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDW 252 +L + A + +GL+D + ++++ L + + D+ Sbjct: 259 LALLKQNQGNLAALSLNLGLVDQLATRQQIRTELADVFGSNGEDSYNYVDY 309 >gi|15022428|dbj|BAB62249.1| proteinase IV [Treponema medium] Length = 606 Score = 132 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 59/285 (20%), Positives = 121/285 (42%), Gaps = 17/285 (5%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE----------LIERIERISRDDSATAL 69 + ++ S ++ + I + G I + + L++ + + DDS A+ Sbjct: 308 INYYSYNKSFKKKETDNQIGVIYLTGSITGTSDNTSDNADSPTLVDLFDEAADDDSIKAV 367 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETS 127 ++ + S GG A E I R+++++ + KPV+ + ++AAS Y I+ +++ I + + Sbjct: 368 VLRIDSGGGEVNASEDIRRSLERLSKKIGKPVVVSMGDIAASGAYWIASSADYIFCSPYT 427 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 + GSIGV P ++ + + S + S F + V +Y Sbjct: 428 ITGSIGVFAVSPSIQKAVQEYFGIHVDGVSVSGRMPYSIFRNPTDAEKTQSELEVMHTYS 487 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F+ V++ RN+P L+ G+I++G +AK++ L D +GG + + Sbjct: 488 IFLDTVAQGRNLPRATVEELAQGKIYSGTQAKELQLADELGGFTDAVNYAATKAGIKETY 547 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 +K L +LL D + K +Q L+ ++ Sbjct: 548 SLKVLYKEPPVTDEIL-----KTLLADNVRFYKTADLQVLYELFR 587 Score = 59.2 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 76/250 (30%), Gaps = 15/250 (6%) Query: 51 QELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 ++ + + + D TA++ LS G S + A+ + K+ + Sbjct: 95 SDITDALRHAAHDRRITAVLFDLSGLYGISTGHFTELKTALLEYKDANKPLYAFSTNYGL 154 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE--PSPF 167 Y I+ ++ I V G + + KLGV + K+ Sbjct: 155 GRYYIASFADHIYLDPMGEVDLSGFYTESLFYGEMEHKLGVQWNVAHAGAFKSMAETYSR 214 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRN--------IPYDKTLVLSDGRIWTGAEAK 219 +E++ V+ +H +++ ++ +R + L + A Sbjct: 215 TEMSAGVRNNNLSVLKDLWHMYLQDIAANRADDANRFETYTVNYNDALRKVNGNSAQAAL 274 Query: 220 KVGLIDVVGGQEEVWQSL----YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 LI +G EE L S I ++ K++ + N L + Sbjct: 275 DANLITDIGTYEECGVELGVLDEETYNLSSRDYINYYSYNKSFKKKETDNQIGVIYLTGS 334 Query: 276 IPLMKQTKVQ 285 I Sbjct: 335 ITGTSDNTSD 344 >gi|315641101|ref|ZP_07896180.1| U7 family peptidase [Enterococcus italicus DSM 15952] gi|315483109|gb|EFU73626.1| U7 family peptidase [Enterococcus italicus DSM 15952] Length = 343 Score = 132 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 72/276 (26%), Positives = 135/276 (48%), Gaps = 21/276 (7%) Query: 30 HVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSS 75 D+ + ++ + G I D+ Q+L+ ++ I DDS +++ ++S Sbjct: 55 EQGDSDKRIVQLTVDGTISDTGESTSLFSSEGYNHQQLLSELKAIQEDDSIKGVLLVVNS 114 Query: 76 PGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 PGG Y I + I KV+ + K + + MAAS GY IS +++ I A ++ GSIGV Sbjct: 115 PGGGVYESAEIAKEIAKVQQKGKILYVSMKSMAASGGYYISASADKIFATNETITGSIGV 174 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + L+KLGV+ ++ KS +K S + +MQ +DS+Y FV +V+ Sbjct: 175 IASNLNYSGLLEKLGVTDQTYKSGALKDMNSSVRPATDEDKAVMQAYIDSAYGRFVDVVA 234 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 RN+ D L+DGRI+ G++A K GL+D +G Q++ +L ++ ++ ++ Sbjct: 235 NGRNLSVDAVKTLADGRIYDGSQAVKNGLVDEIGYQDDTLAALKKDNKLENA-EVFEYAV 293 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + S++ + +KQ++ + ++ Sbjct: 294 SATGFASSWLGSSLA-----ELQGLKQSESSRVLSI 324 >gi|326334330|ref|ZP_08200544.1| signal peptide peptidase SppA [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693489|gb|EGD35414.1| signal peptide peptidase SppA [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 607 Score = 132 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 114/237 (48%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 ++ +IE + D + A+I+ ++SPGGS A E I R I + KPV T + A Sbjct: 338 IGNETIIESLRDAREDKNIKAIILRINSPGGSGLASELIHREIALTQKVKPVYTSMGNWA 397 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 AS GY I+C SN I A + +L GSIGV P K DK+G+ + V++ P S Sbjct: 398 ASGGYYIACNSNRIFADKETLTGSIGVFGLIPNAKELADKIGIHSQQVETHPHALTYSLL 457 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 + K +++ + ++ Y FV+ V++ R + ++K L+ GR+WTGA+A K GLID + Sbjct: 458 EKTPEKTREVITEGIERFYKKFVQRVADGRKMTWEKVDSLAQGRVWTGADALKHGLIDQI 517 Query: 228 GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 G +V + S P F + + + + + ++ Sbjct: 518 GSLNDVIDYVAKEKNLSSGNYSLIAYPIIEVDFSEFFKKQFQASTRAELRFLLREEI 574 Score = 83.9 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 88/274 (32%), Gaps = 25/274 (9%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIEDSQE----- 52 ++ +L I ++ + L+ L + + + + + + + Sbjct: 17 LKTILAVIIGFFISICLILLAFIGMGSAFSPKKESTKENSILSLDFKKPVYEYSQPIYIK 76 Query: 53 --------------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 ++ I+ D +I+ + I +A+ K Sbjct: 77 NFNYEITEENTLTAILRAIKYAKTDKHIKGIILGSTEGITGKTHLADIRKAVADFKTTGK 136 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 + E + Y + ++ + V G+ + Y K +K G+ ++ + Sbjct: 137 FVYAFGESISQYDYFLHSVADSLFLGTLGSVDIQGLSAEVLYYKDLQEKTGIHMEIFRHG 196 Query: 159 PMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTG 215 K+ PF E ++ + + + S + + V +SR ++D T Sbjct: 197 KYKSAVEPFLENTMSEANREQISAYLHSLWQSYADEVVQSRGFSLSDLNQIADSLWGRTP 256 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 A K L+D + +E SL + + I + Sbjct: 257 ELALKHHLVDKIAFHDEFENSLCKVTKSEKIEDL 290 >gi|149920043|ref|ZP_01908517.1| signal peptide peptidase SppA, 36K type [Plesiocystis pacifica SIR-1] gi|149819140|gb|EDM78576.1| signal peptide peptidase SppA, 36K type [Plesiocystis pacifica SIR-1] Length = 884 Score = 132 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 73/274 (26%), Positives = 117/274 (42%), Gaps = 23/274 (8%) Query: 37 HVARIAIRGQIED---------------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 HVA + I G I+D + L + I + D A++V + SPGGS Sbjct: 569 HVAVLHIDGTIDDGISLHVPILDIDVSGAASLTKTIAALRDDPDVRAIVVRVDSPGGSVK 628 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + I A+ + KPV+ + AAS GY ++ A I A T+L GSIG+ + Sbjct: 629 GAQDIAHALDLAREVKPVVISMGNQAASGGYWVATAGQYIYADATTLTGSIGIFYPKFDF 688 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 FLD+ GV + SV A S + + + + +SY F+ V+E+R + Sbjct: 689 SEFLDRYGVGVDSVAIGDRAAMRSMWLANSDADREAAMRGIRASYDRFIVRVAEARAMTP 748 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY---ALGVDQSIRKIKDWN--PPK 256 ++ ++ GR+W+G A +VGL+D GG E L +I+ + P Sbjct: 749 EQADAVARGRVWSGVRALEVGLVDRYGGLYEAVGRAAVMGELADSGDALEIRHYPEDPTL 808 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 L N + L ++ QGL A+ Sbjct: 809 VDQIRRLWNFELDLPLGRAGGALRG---QGLAAI 839 Score = 66.2 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 13/228 (5%) Query: 37 HVARIAIRGQIEDSQELIERIER----ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 V RI++ G+ D ++L E + R +++ + E + A+ + Sbjct: 338 QVTRISLAGK-SDDRDLAEVVWTFDGLARRGPGV--ILLEVDGSDFGLAQLEEVREAVLR 394 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 + + + E A++ Y ++ + + I A + GVL Y L +LGV Sbjct: 395 YRAQGGKVVAYLEGASTFEYFLAASCDRIYAHPQQGLELRGVLRNTFYFGELLGRLGVRA 454 Query: 153 KSVKSSPMK--AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 + V+ + K E + E + + + V +++ VRL+ SR D Sbjct: 455 EFVRVAEYKGTPERASRGEPSAPVARANRAYVTDTWNHVVRLIGHSRARDPAVVSEWIDR 514 Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 +WT +A+++GLI+ + EE+ L R ++ PPK Sbjct: 515 AVWTPEDARRMGLIEGLAWPEELDARLEGWLG----RAVRIDAPPKAP 558 >gi|28898926|ref|NP_798531.1| protease IV [Vibrio parahaemolyticus RIMD 2210633] gi|153838581|ref|ZP_01991248.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus AQ3810] gi|260363623|ref|ZP_05776430.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus K5030] gi|260878875|ref|ZP_05891230.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus AN-5034] gi|260896203|ref|ZP_05904699.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus Peru-466] gi|260900719|ref|ZP_05909114.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus AQ4037] gi|28807145|dbj|BAC60415.1| protease IV [Vibrio parahaemolyticus RIMD 2210633] gi|149748046|gb|EDM58905.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus AQ3810] gi|308088812|gb|EFO38507.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus Peru-466] gi|308094244|gb|EFO43939.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus AN-5034] gi|308109743|gb|EFO47283.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus AQ4037] gi|308115086|gb|EFO52626.1| signal peptide peptidase SppA, 67K type [Vibrio parahaemolyticus K5030] Length = 616 Score = 132 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 67/274 (24%), Positives = 124/274 (45%), Gaps = 13/274 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 ++ + + +A + G I D + + + D+ A Sbjct: 307 ISYYDYLATIRPDYTLANHDIAVVVASGAIMDGQQPRGTVGGDTVASLLRQARNDEKVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I ++ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEVEALKKAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + KLG++ V +SP + + ++ A Q Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGFSKLGINTDGVGTSPF-SGDGITTGLSEGASQAFQLGIEHGYK 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-- 245 F+ LV +R++ ++ ++ GR+WTG +A GL+D +G ++ + L Sbjct: 486 RFISLVGSNRDMTVEEVDKVAQGRVWTGQDALSFGLVDQMGDFDDAVELAAKLANVTDYG 545 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 I +++ P + + N SL D L+ Sbjct: 546 IYWVEEPLSPTELFLQEFMNQVKVSLGVDATSLL 579 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 40/284 (14%), Positives = 91/284 (32%), Gaps = 37/284 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + F+ + +L + + ++ + + G I + + Sbjct: 19 ITFIRLALANLIFLLMIAVFYFAFTYTGEGRPVIEKESALVMNLSGPIVEQRRYVNPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93 ++++ I D + L+++L P + I +A+ + Sbjct: 79 VAGSLLGNEMPKENVLFDIVDTIRYAKDDAKVSGLVLALRDLPETNLTKLRYIAKALNEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ + A V G Y K L+KL VS Sbjct: 139 KASGKPVYAVGDFYNQSQYYLASYADKVYMAPDGGVLIKGYSAYSMYYKTLLEKLDVSTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF +++ A + V + FV V+ +RNI + Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESATRWVTQLWSAFVDDVTTNRNINAKVLNPTMEEL 258 Query: 212 I--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 + A K+GL+D + ++++ Sbjct: 259 LAEMKSVDGDLAQLAVKMGLVDELATRQDIRTLFAKEFGSDGKD 302 >gi|253827669|ref|ZP_04870554.1| protease IV [Helicobacter canadensis MIT 98-5491] gi|253511075|gb|EES89734.1| protease IV [Helicobacter canadensis MIT 98-5491] Length = 277 Score = 132 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 60/244 (24%), Positives = 121/244 (49%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIV 71 + L + + V+ F SS + +VARI ++G I S +E + ++ + + +++ Sbjct: 4 FKALVFLLIVVLIFMPSSSENSSLANVARIDLKGMIIQSDSFLEELSKLENNPNIKGVLL 63 Query: 72 SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 + SPGG+ I A+++++++KP++ AS YL ++ I+A + +LVGS Sbjct: 64 VIDSPGGTIPPSVEISEAVKRMRSKKPIVAYAQGSMASGSYLAGVWADRIIANKGALVGS 123 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IGV+ V +KLG+ + +K+ K + N +M++ ++ Y FV Sbjct: 124 IGVILNGVDVSELAEKLGIKTQILKAGIYKEAGTFMRPWNQAEEEMLKGLIKEQYEMFVS 183 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 V +RN+ K + GR+++ + A K+GL+D + E ++L+ L Q+ ++ Sbjct: 184 EVVAARNLEITKEGEFAQGRVFSASNALKLGLVDSISSIYEAQKTLFELAKIQNPIWLQK 243 Query: 252 WNPP 255 Sbjct: 244 SEME 247 >gi|289582267|ref|YP_003480733.1| signal peptide peptidase SppA, 36K type [Natrialba magadii ATCC 43099] gi|289531820|gb|ADD06171.1| signal peptide peptidase SppA, 36K type [Natrialba magadii ATCC 43099] Length = 334 Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 64/298 (21%), Positives = 129/298 (43%), Gaps = 27/298 (9%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------DSQ 51 + + L ++ L + S + S +VA +A+ G I + Sbjct: 38 LFGLVIALVVILLGIKVISGIASSMFASYNVAEVAVEGPITRDGGGGGPLPSRPQSTPAD 97 Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 +++E+I+R D++ AL++ L++PGG + I A ++ P + +++ AS G Sbjct: 98 DIVEQIDRADEDENVDALLLKLNTPGGEVVPSDDIRLAAERF--DGPTVAYTNDVCASGG 155 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ + + A + S+VGSIGV+ +K+G+S + + K +P E+ Sbjct: 156 YWIASGCDALWARDGSIVGSIGVIGSRVNASDLAEKVGLSYERFAAGEFKDAGTPLKELE 215 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 +Q ++D Y FV VS+ R++ + ++ RI+ G EA ++GL+D +G + Sbjct: 216 EDERAYLQGLIDDYYETFVDRVSDGRDMDPEFVRD-TEARIYLGEEAHELGLVDELGTRR 274 Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 ++ L ++ + + P+ L + + GL A Sbjct: 275 DLEDELTDQ--LETDEVVIEEFEPQRPLMARLGTG------AQQVAYAFGAGIAGLGA 324 >gi|302345567|ref|YP_003813920.1| signal peptide peptidase SppA, 67K type [Prevotella melaninogenica ATCC 25845] gi|302149332|gb|ADK95594.1| signal peptide peptidase SppA, 67K type [Prevotella melaninogenica ATCC 25845] Length = 592 Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 72/276 (26%), Positives = 129/276 (46%), Gaps = 16/276 (5%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------------SQELIERIERISRD 63 VT+ + + + D VA G I D +Q + + +E +++D Sbjct: 286 VTIADMVNTEDKNQGDKENEVAVYYAYGDIVDGVVGGLFSQGHQIDAQVVCKDLEELAKD 345 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 A++V ++S GGSAYA E I+ I ++K KPV+ + MAAS GY +S +N IVA Sbjct: 346 KDVKAVVVRVNSGGGSAYASEQIWHQIMELKKLKPVVVSMGGMAASGGYYMSAPANWIVA 405 Query: 124 AETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 T++ GSIG+ +P V L +KLG+ VK++ + + + + V Sbjct: 406 EPTTITGSIGIFGMFPDVSGLLREKLGLKFDEVKTNKYADFGTRARPFTEEEMSYLSQYV 465 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + Y F V+E R + + ++ G ++TG +A+K+GL+D +GG + L Sbjct: 466 NRGYKLFRHRVAEGRKMTEKQVEKVAQGHVFTGQDAQKIGLVDQLGGLDVAVAKAAQLAK 525 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278 + RK + N+ ++ + ++ L + Sbjct: 526 LPNYRKCA-YPKEPNFLEQMMEQTNPNNYLSQQLRA 560 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 95/260 (36%), Gaps = 24/260 (9%) Query: 14 MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQELI 54 + +L T+ + S + E + + + GQ+ +++ Sbjct: 24 LFALFTIVGMIASQDTTKEPEDNSILVLNLSGQMSERSENNFLSQLQGSQINSLGLDDML 83 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 E I + +D + + + +YA +A+ +A+ K + I + Y Sbjct: 84 EGIRKAKDNDKIKGIYIEAGAFASDSYASMQALRKALLDFKKSRKWIIAYADTYTQGTYY 143 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVN 171 +S ++ + + G+ + ++K L K GV ++ VK K+ F +++ Sbjct: 144 LSSVADKVYLNPQGQIDWHGLASEPVFIKDLLAKFGVKMQVVKVGAYKSATEMFTGDKMS 203 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG--AEAKKVGLIDVVGG 229 + ++S + + V SR + + +D I E K+ L+D + Sbjct: 204 DANREQTSAYLNSIWGNITKEVGASRGLSVAQLNAYADSMITFADPQEYVKLKLVDGLVY 263 Query: 230 QEEVWQSLYALGVDQSIRKI 249 +++ + ++ + I Sbjct: 264 TDQIKGIVKKQLGIEADKDI 283 >gi|119503764|ref|ZP_01625846.1| signal peptide peptidase SppA, 67K type [marine gamma proteobacterium HTCC2080] gi|119460272|gb|EAW41365.1| signal peptide peptidase SppA, 67K type [marine gamma proteobacterium HTCC2080] Length = 609 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 125/284 (44%), Gaps = 13/284 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATA 68 ++ S D+ +A I G I + + ++++I + D+ A Sbjct: 306 ISYGKYAKQISDDYLDSGHQIAVITAEGVIREGEISPGVAGANGVVKQIRKAHEDEDTKA 365 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETS 127 ++ ++SPGGS A E + + K + VI + + AAS G IS ++ I A T+ Sbjct: 366 IVFRVNSPGGSIIASEMMRDELLAAKRKGIKVIVSMGDYAASGGVYISTPADYIFAEPTT 425 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 + GSIGV P ++ +D +GV+ V +S P ++ ++ ++Y Sbjct: 426 ITGSIGVAIALPTLENAMDYIGVNFDGVVTSKH-GGWDPTQAIDDDLDKIFASWGSAAYD 484 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F+ V+ESR+ YD ++ GR+W AK +GL+D +GG ++ +L + Sbjct: 485 RFINFVAESRSQTYDDIKAVAGGRVWIATSAKDIGLVDEIGGIDDALTYAASLAELED-Y 543 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 +++ + + LK L + P + + G+ ++ Sbjct: 544 QVEYYGQELSPEEMILKELLEQLDVSIGEPKVLSA-LDGIARLY 586 Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 96/278 (34%), Gaps = 33/278 (11%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ----------------- 51 T V+ ++ + + VED S I +G + D + Sbjct: 27 TTLIVVFLVIAIIEALTASGPDVEDPSGKALLIDPKGMVVDQEVFNSESLLTTVTDSSST 86 Query: 52 -----ELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHE 105 +L++ I + DDS A++V SS G I + ++ +++ + ++ Sbjct: 87 QIQTRDLVKLIRAAAEDDSIPAVVVDFSSTGFAGPTTAINIAKELKALRDSGKRVIAFND 146 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK--AE 163 ++ YL++ ++ + + G+ Y K + L ++I + K E Sbjct: 147 RLSTTSYLMASQASEVWVHPVGSISVRGLGGMRNYNKDLFENLKITIHNYSQGDFKSATE 206 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGAE----- 217 S S ++ + ++ + L++E R I D +D + + G Sbjct: 207 TSWRSNMSENDRMQREALLFPIWEEMKSLMAEGRGIASDDIQSFADNYVGFFGEAAIGNI 266 Query: 218 --AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 A+ +ID E Q + + + + Sbjct: 267 AYAQANNIIDGTKSFPEFRQYMIEEFGLDEEAETQTYK 304 >gi|78189660|ref|YP_379998.1| peptidase S49, protease IV [Chlorobium chlorochromatii CaD3] gi|78171859|gb|ABB28955.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Chlorobium chlorochromatii CaD3] Length = 601 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 59/269 (21%), Positives = 115/269 (42%), Gaps = 12/269 (4%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQELIE----------RIERISRDDSATALIVSLSSPGG 78 S +A I + G I S + ++ +E + S A+++ + SPGG Sbjct: 296 PQHSSTSDAIAVITMSGPIMRSVDNLDDGIDVATMQHSLEAALENKSVKAIVLRIDSPGG 355 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A A I + I +K ++ + +AAS GY+++ IVA ++ GSIGV Sbjct: 356 EAIASADILQMINAAATKKTLVVSMSGVAASGGYMVALGGKTIVAHPLTITGSIGVYALK 415 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P ++ +K+G+ + + SPF+ + +A Y+ F+ V+ SR Sbjct: 416 PTIQGLAEKVGLQREVITRGRFADATSPFTPLEGEAYNKFVASAGDVYNDFISKVATSRR 475 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK--IKDWNPPK 256 + ++ GR+WTG+ AK+VGL+D +GG + ++ I + + Sbjct: 476 MKVTAVDSVAGGRVWTGSRAKQVGLVDRMGGLFDALALAKERAGISKDKEPTILLYPLQQ 535 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 + L +++S+ + + + Sbjct: 536 GWLQSLLGGATLNSVTKAIATALLGNVLP 564 Score = 85.4 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 108/250 (43%), Gaps = 21/250 (8%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE------------------DSQEL 53 ++++ L + +++++ S + V + + G++ QE+ Sbjct: 21 FLVVPLFIVVALFWAFRSSHDMPDRFVLVVPLSGKLAEVNNERSSLPFMPSQGDLSLQEV 80 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 + + ++D+ + +++ L + + A+ V+ + ++ A + YL Sbjct: 81 LFVLHEAAKDEQVSEVLLQLDGVEAAPAKIAEVRAAVADVRRKGKKVSAFLYRAEDSDYL 140 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN-- 171 ++ A++ I+ + + G+ + + L+KLG+++++ + K+ PF+ + Sbjct: 141 LATAADTIIMQRGASLLLDGLKAESLFYTGTLNKLGITVQAAQWKEYKSGIEPFTRTSAS 200 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGGQ 230 + + + ++D Y+ ++ VSE R I + + + + AK +GL+D + Sbjct: 201 KEYREQINMLLDDVYNNYLSAVSERRKISRSAFEAIINNEALLSAERAKALGLVDRIATF 260 Query: 231 EEVWQSLYAL 240 +V +S+ Sbjct: 261 WDVERSMTKQ 270 >gi|329769509|ref|ZP_08260919.1| hypothetical protein HMPREF0433_00683 [Gemella sanguinis M325] gi|328838724|gb|EGF88322.1| hypothetical protein HMPREF0433_00683 [Gemella sanguinis M325] Length = 322 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 61/253 (24%), Positives = 125/253 (49%), Gaps = 11/253 (4%) Query: 30 HVEDNSPHVARIAIRGQIEDSQ-------ELIERIERISRDDSATALIVSLSSPGGSAYA 82 S + +I++ G+I +I +I+ S D + A+++S+++PGG Y Sbjct: 56 KEGSGSEVIQKISVEGEIGSEMTNTYSRGSIINQIKVASADPNVKAILLSVNTPGGGVYE 115 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I+ A++ + K V + + A S GY IS A+ I A + GSIGV+ Y + Sbjct: 116 TAEIYNALK--NSGKDVYVAMKKQATSGGYYISMAAKKIYANSETTTGSIGVIMSYVSAQ 173 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 FL++ G+ ++++S KA ++ ++ Q+ +Y FV+ ++E RN+ D Sbjct: 174 KFLNEHGIKQETIRSGDQKAIGGLAEDLPESTRKIYQEQNKEAYDRFVKAIAEGRNMSED 233 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDWNPPKNYWF 260 + L+DGR ++G +A + L+D +G ++E+ + S+ +++ + ++ Sbjct: 234 EVKKLADGRTYSGKQAVENKLVDKIGTEDELINLIKEEKNLSNPSVIELRKDSSSESILS 293 Query: 261 CDLKNLSISSLLE 273 +K + S + E Sbjct: 294 RLVKATTRSIISE 306 >gi|113461051|ref|YP_719118.1| protease IV family protein [Haemophilus somnus 129PT] gi|112823094|gb|ABI25183.1| protease IV family [Haemophilus somnus 129PT] Length = 621 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 63/265 (23%), Positives = 133/265 (50%), Gaps = 17/265 (6%) Query: 5 LKKIKTRYVM-----LSLVTLTVVYFSWSSHVEDN-SPHVARIAIRGQIEDSQE------ 52 +KI R+++ L V + P +A + + G I D + Sbjct: 287 REKIIKRWIVNSDDKLDFVEFEDYLAILKNRFAQPTQPAIAVVNVEGAIVDGESDEQNVG 346 Query: 53 ---LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAA 108 + + + + + + A+++ ++SPGGSA+A E I + + ++ KPV+ + +AA Sbjct: 347 GDSIAQLLREANDEPNIKAVVLRVNSPGGSAFASEIIRQEVDNLQKSGKPVVVSMGAIAA 406 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 S GY IS ++ IVA ++ GSIG+ +P + + K+GV+ V ++ + + FS Sbjct: 407 SGGYWISSTADYIVADPNTITGSIGIFAMFPTFEKSMQKIGVNADGVATTDVVMKSH-FS 465 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 ++ + +++Q ++ Y F+ +VS RN+ + ++ G++W+G +A L+D +G Sbjct: 466 PLSKISSEIIQLEIEHGYDQFLDVVSRGRNLSKTQVDKIAQGQVWSGFDAYTYKLVDQLG 525 Query: 229 GQEEVWQSLYALGVDQSIRKIKDWN 253 ++ + L + +S +IKD++ Sbjct: 526 SFDDAVEKARELVIQKSSEEIKDFS 550 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 55/319 (17%), Positives = 126/319 (39%), Gaps = 38/319 (11%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------ 51 V+ + +V+L + +V + + + + G + D++ Sbjct: 22 VMNIVFLFFVLLIVAVFSVNSSMSNKVDLTHFKGALLLNLDGYLADNRSDDTAWQELLLE 81 Query: 52 -------------ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRK 97 +++ I+ +D TAL++ L+ G A I +AIQ K K Sbjct: 82 LGNQHVPRKISTFDVVNAIQAAKKDPKITALVLDLNYFDGKDIPALTYIGKAIQAFKASK 141 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + YL++ +++I+ V G++ + Y K +KL ++ + Sbjct: 142 KPVIAYADNYTQSQYLLASYADVILLNPQGEVAIEGMVAENLYFKSLFNKLEITPHIFRV 201 Query: 158 SPMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-----LSDG 210 K+ PF +++ K+ + ++ + + ++V+E+R+IP + L LS+ Sbjct: 202 GTYKSAVEPFMLDKMSEKSRENTSRWLNQLWKSYQQIVAENRDIPLAQVLPDSKTYLSEL 261 Query: 211 RIWTGAE---AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G + AKK GLI + +E + + + S K+ D+ ++Y + Sbjct: 262 KALNGNQTEYAKKRGLITELAVTQE-REKIIKRWIVNSDDKL-DFVEFEDYLAILKNRFA 319 Query: 268 ISSLLEDTIPLMKQTKVQG 286 + + ++ V G Sbjct: 320 QPTQPAIAVVNVEGAIVDG 338 >gi|320156922|ref|YP_004189301.1| protease IV [Vibrio vulnificus MO6-24/O] gi|319932234|gb|ADV87098.1| protease IV [Vibrio vulnificus MO6-24/O] Length = 616 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 65/274 (23%), Positives = 127/274 (46%), Gaps = 13/274 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 ++ + + + N+ +A + G I D + + + DD A Sbjct: 307 ISYYDYRATMRDNFDVNADDIAIVVASGTIMDGQQPRGTVGGDTVAGLLRQARNDDKVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I +Q + KP++ + +AAS GY IS +++ I+A T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEVQALKDAGKPIVVSMSSLAASGGYWISMSADKIIAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + +KLG+ V +SP E + ++ A Q Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGFNKLGIYTDGVGTSPFSGEGIS-TGLSKGASQAFQMGIEHGYQ 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI- 246 F+ LVS++R++ D ++ GR+WTG +A + GL+D +G ++ + ++ Sbjct: 486 RFISLVSDNRDLSLDAVDKVAQGRVWTGYDALQHGLVDQIGDFDDAVAEAAKMAQLENYN 545 Query: 247 -RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 +++ P + + S+ D ++ Sbjct: 546 LYWVEEPLSPTEQFIQEFMKQVKISMGVDIQSIL 579 Score = 95.1 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 55/295 (18%), Positives = 104/295 (35%), Gaps = 40/295 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSS-HVEDNSPHVARIAIRGQIEDSQ-------- 51 + FV + +LS+ + VYF + P + + G I + Sbjct: 19 ITFVRLALTNLIFLLSVALVYFVYFYGHDTQPQVEQPSALVLNLSGPIVEQSLYINPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93 ++++ I D+ T L++SL P + I +A+ + Sbjct: 79 FTSSLFGEEIPKENVLFDVVDTIRYAKDDEKITGLVLSLRDMPETNLTKLRYIAKALNEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K I + + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 139 KASGKPIYAIGAFYNQSQYYLASYADKIYLAPDGGVMLKGYSAFNLYYKTLLEKLDVTTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV----- 206 + K+ PF +++P A + + + FV V+ +RNI Sbjct: 199 VFRVGTYKSAIEPFVRDDMSPAAKESATRWLTQLWGAFVDDVANNRNIDPKTLNPSMEEF 258 Query: 207 LSDGRIWTGAEA---KKVGLIDVVGGQEEVWQSLYAL---GVDQSIRKIKDWNPP 255 LS + G A K+GL+D + ++++ L D S + I ++ Sbjct: 259 LSQLKSVNGDLAALSIKLGLVDELATRQQLRAQLAEKFGASGDDSYKAISYYDYR 313 >gi|119486156|ref|ZP_01620216.1| protease IV [Lyngbya sp. PCC 8106] gi|119456647|gb|EAW37776.1| protease IV [Lyngbya sp. PCC 8106] Length = 273 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 73/265 (27%), Positives = 135/265 (50%), Gaps = 9/265 (3%) Query: 36 PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 +ARI + G I + ++E ++ I AL++ + SPGG+ + I+ A++K+ Sbjct: 11 KQIARIEVTGVIASDTRKRVLEALKTIEE-RKYPALLLRIDSPGGTVADSQEIYSALKKL 69 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 +++ ++ ++AS G I + I+A ++ GSIGV+ + ++ LDK+GVS K Sbjct: 70 QDKLKIVASFGNISASGGVYIGMGAQHIMANPGTITGSIGVIIRGNNIEGLLDKVGVSFK 129 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 +KS P K + ++ Q++Q+++D+SY FV V+ESRN+ +DGRI+ Sbjct: 130 VIKSGPYKDILAFDRQLTDPEKQILQELIDTSYRQFVITVAESRNLEETAVRSFADGRIF 189 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLKNLSIS--- 269 TG +A ++G+ID +G +EE L D + PK+ L N ++ Sbjct: 190 TGEQALELGVIDRLGTEEEARCWAAELVNLDPDKTECDTLEKPKSLVSRVLSNNNLETSR 249 Query: 270 -SLLEDTIPLMKQTKVQGLWAVWNP 293 + ++ + T LW ++ P Sbjct: 250 LASAKNWLEFELSTSGLPLW-LYRP 273 >gi|269138839|ref|YP_003295540.1| periplasmic serine protease (ClpP class), protease IV [Edwardsiella tarda EIB202] gi|267984500|gb|ACY84329.1| periplasmic serine protease (ClpP class), protease IV [Edwardsiella tarda EIB202] gi|304558830|gb|ADM41494.1| Protease IV [Edwardsiella tarda FL6-60] Length = 617 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 66/270 (24%), Positives = 123/270 (45%), Gaps = 14/270 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGS 79 + +A I G I D + +I + D + A+I+ ++SPGGS Sbjct: 318 KPKPTGNGQIAVIFASGPIIDGEATPGSVGGDTTAAQIRQARLDPAIRAIILRVNSPGGS 377 Query: 80 AYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I A+ + KPV+ + +AAS GY IS +N I+A+ ++L GSIG+ Sbjct: 378 VTASEEIRSALAAARDAGKPVVVSMGGLAASGGYWISTPANAIIASPSTLTGSIGIFGVI 437 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L +LGV V +SP+ + + +MQ +++ Y F+ LV+ +R+ Sbjct: 438 NTFEKPLSQLGVYTDGVATSPLADT-ALTKALPQSVSDLMQLTIENGYQRFISLVATARH 496 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + ++ GR+W G +AK GL+D +G ++ L +++ + N Sbjct: 497 KTPAQIDSIAQGRVWLGVDAKANGLVDRLGDFDDAVSQAATLAGI-KQPQLRWY--VDNP 553 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 F ++ ++S ++ ++P Q + Sbjct: 554 SFSEMVFSQLTSSVQASLPQALQGMIPASL 583 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 48/252 (19%), Positives = 96/252 (38%), Gaps = 22/252 (8%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASA 110 +L+E + + D + T L++SL++ G+ + I +A+ + + I V E A Sbjct: 98 DLVETLRQAKSDPNITGLVLSLNNFAGADQPSLQYIGKALAEFRASGKPILAVGESYTQA 157 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FS 168 Y ++ +N I + VG G+ Y K LDKL VS + K+ P Sbjct: 158 QYFLASYANKIYLSPQGSVGLQGMATNNLYYKSLLDKLDVSTHIFRVGTYKSAVEPLMRD 217 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT----LVLSDGRIWTG----AEAKK 220 +++P+A ++ ++ ++ V+ +R++ ++ + G TG A Sbjct: 218 QMSPQARSADSQWLNGMWNNYLATVAANRHLTPEQVFPGAEQMLKGLQATGGDMAQYAVL 277 Query: 221 VGLIDVVGGQEEVWQSLYA------LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLED 274 L+D + + EV L D + D+ + +S Sbjct: 278 HRLVDGLASRSEVEGILSKQFGWDTRARDYRHISLYDYPLKPKPTGNGQIAVIFASG--- 334 Query: 275 TIPLMKQTKVQG 286 P++ G Sbjct: 335 --PIIDGEATPG 344 >gi|145588579|ref|YP_001155176.1| peptidase S49 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046985|gb|ABP33612.1| peptidase S49 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 315 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 70/268 (26%), Positives = 123/268 (45%), Gaps = 14/268 (5%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIEDSQ-----ELIERIERISRDDSATALIVSLSSPGGS 79 F H A + + G+I S ++ + ++ + +I+ ++SPGGS Sbjct: 53 FHLPGRGMGVEKHTAMVTLDGEISSSSMANAMDINSALTAAFENEHSAGVILRINSPGGS 112 Query: 80 AYAGEAIFRAI---QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 + I +K+ KP V ++ AS GY ++ AS+ I+ + SLVGSIGV+ Sbjct: 113 PVQAGMMNDEIHRLRKLHPNKPFYVVVEDICASGGYYVAVASDQILVDKASLVGSIGVIM 172 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + +DKLGV+ + + + K PFS+ PK V+M++ ++D + F+ +V E Sbjct: 173 EGFGFTGLMDKLGVTRRMITAGSNKGMLDPFSKEEPKQVEMVKTMIDEIHQQFIAVVKEG 232 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R +T L GRIW G +A K+GL+D G + V + ++ I D+ + Sbjct: 233 RGARLKETPDLFSGRIWNGEQAVKLGLVDGYGTVDSVARDIFK------APDILDYTQKE 286 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKV 284 N+ K + L+K + Sbjct: 287 NFAERVAKRFGAEAGAAAGKALVKAPDL 314 >gi|42525822|ref|NP_970920.1| signal peptide peptidase SppA [Treponema denticola ATCC 35405] gi|41815872|gb|AAS10801.1| signal peptide peptidase SppA [Treponema denticola ATCC 35405] Length = 609 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 63/245 (25%), Positives = 111/245 (45%), Gaps = 12/245 (4%) Query: 34 NSPHVARIAIRGQIED-----------SQELIERIERISRDDSATALIVSLSSPGGSAYA 82 + + I I G I S ++++ + D + A++V ++S GG +A Sbjct: 321 SQNSIGVIHINGAISSTGTGRIDDSAVSYKIVDLFDIAQGDPTVKAIVVRVNSGGGEVFA 380 Query: 83 GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 E I RAI + K PV+ + +AAS Y IS +++ I A+ ++ GSIGVL P Sbjct: 381 SEEIRRAIDRAKASGLPVVVSMGSVAASGAYWISSSADYIFASPYTITGSIGVLATAPSF 440 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 K + K + S K S E +P+ ++ Q V Y F+ V+ RN+P Sbjct: 441 KEAVKKYLGITSDLVYSGQKPSYSVLEEPSPEEKEVRQMEVMHIYKTFIETVARGRNLPE 500 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 L+ GR+++G +A + L+D +G +E + L +K+ P + Sbjct: 501 KTVEELAGGRVYSGEQALNLKLVDALGSLDEAVKYAAELANISGQYSVKEIKKPLPFTEA 560 Query: 262 DLKNL 266 +K++ Sbjct: 561 LIKSI 565 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 33/243 (13%), Positives = 78/243 (32%), Gaps = 36/243 (14%) Query: 29 SHVEDN-----SPHVARIAIRGQIEDSQ--------------------ELIERIERISRD 63 S V I G + + + +L++ I+ + D Sbjct: 48 PSNTKTVERVPSEAVLMINPSGVLTEKESDIFSAGIPAIGKKSAVLVSDLVKAIKNAAFD 107 Query: 64 DSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 T+L + S GG S+ + A++ KN I + Y ++ ++ I Sbjct: 108 RRITSLYLDFSELGGLSSGHLSELGDALKVFKNSGKKIYAYAVGYSIPSYFLASYADRIG 167 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE--PSPFSEVNPKAVQMMQD 180 V G + + K +K G+ +++ K ++ ++ Sbjct: 168 IDPLGEVSFAGFASRPVFFKGLEEKFGIKWNVIQAGTYKGMAETYSRDNLSQNVRTNLKS 227 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--------GAEAKKVGLIDVVGGQEE 232 + D ++ + ++ +RN+P +K ++ A + G + + +E Sbjct: 228 MFDDLWNKYTSDIAANRNMPPEKIRAFAENNNALIKKYEGNGAKAALEEGFVTDIASVDE 287 Query: 233 VWQ 235 Sbjct: 288 FAA 290 >gi|86608144|ref|YP_476906.1| signal peptide peptidase SppA, 36K type [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556686|gb|ABD01643.1| signal peptide peptidase SppA, 36K type [Synechococcus sp. JA-2-3B'a(2-13)] Length = 384 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 69/329 (20%), Positives = 139/329 (42%), Gaps = 43/329 (13%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNS---------PHVARIAIRGQIEDS------ 50 + + +++ L+ V + + + + G I Sbjct: 48 RILAASLLVVCLIAAIVGGTRPAPEPTRGGVGLEAARGAERIEVVTLEGTIGGPGGSTLV 107 Query: 51 ---QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEM 106 +E++ +RD S A+++ ++SPGG+ + + ++RA+ + KPVI + + Sbjct: 108 GLPTSPVEQLREAARDPSVKAVLLRINSPGGAVGSSQELYRAVTALHEADKPVIAILENI 167 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 AAS GY ++ A++ I A +L GSIG + L+ G+ ++ K+ K SP Sbjct: 168 AASGGYYVASAADKIYANPGTLTGSIGAIISGLSFGKLLENYGIEPQTFKTGEYKDLLSP 227 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------------------TLV 206 F P+ +++Q++V+ + F+R V++ R +K Sbjct: 228 FRSATPQEQRLLQNLVEDTLEQFIRDVAQGRQHLPEKADEVLEAEMIARRQSLDEDRVRQ 287 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD----WNPPKNYWFCD 262 L+DGRI+TGA+A +VGL+D +GG E + L + D S+ + + Sbjct: 288 LADGRIFTGAQAVEVGLVDALGGYTEAVEDLRRMTGDPSLSPAGEGEGFQRVLRRLLSQG 347 Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 L + ++ L + + + + +W Sbjct: 348 LSSQRQAAWLGRLLESNEAVGIPDVPLLW 376 >gi|163801948|ref|ZP_02195845.1| cytoplasmic asparaginase I [Vibrio sp. AND4] gi|159174456|gb|EDP59260.1| cytoplasmic asparaginase I [Vibrio sp. AND4] Length = 616 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 68/285 (23%), Positives = 128/285 (44%), Gaps = 13/285 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 + + + ++ +A + G I D + + + DD A Sbjct: 307 IGYYDYLATMAPNLTPAVDDIAVVVASGAIMDGQQPRGTVGGDTVASLLRQARNDDKVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I ++ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEVEALKEAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + +KLG+S V +SP + + ++ A Q Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGFNKLGISTDGVGTSPF-SGDGITTGLSDGASQAFQLGIEHGYK 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI- 246 F+ LV +R + ++ ++ GR+WTG +A GL+D +G ++ Q L ++ Sbjct: 486 RFISLVGSNREMSLEEVDKVAQGRVWTGQDAMSFGLVDQMGDFDDAVQLAAKLAEVENYQ 545 Query: 247 -RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 +++ P + + N SL D + ++ + Sbjct: 546 LYWVEEPLSPAEQFVQEFMNQVKVSLGIDATSFLPKSLQPVAQQL 590 Score = 95.1 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 92/284 (32%), Gaps = 37/284 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + FV + ++ + + ++ + + G I + + Sbjct: 19 ITFVRLALANLIFLVMIAVFYFAFSYTGEDKPAIEKESALVMNLSGPIVEQRRYVNPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93 ++++ I D + L+++L P + I +A+ + Sbjct: 79 VAGSILGNEMPKENVLFDIVDTIRYAKDDPKVSGLVLALRDMPETNLTKLRYIAKALNEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ I A V G Y K LDKL VS Sbjct: 139 KTSGKPVYAVGDFYNQSQYYLASYADKIFLAPDGGVLIKGYSSYSMYYKALLDKLDVSTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF +++ A + + + FV V+ +RNI D Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESATRWITQLWDAFVDDVATNRNIDAKALNPTMDEL 258 Query: 212 I--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 + A K+GL+D + +++V + Sbjct: 259 LTEIKSVDGDLAQLAVKMGLVDELATRQDVRKRFAKEFGSDGKD 302 >gi|78185347|ref|YP_377782.1| peptidase S49, SppA [Synechococcus sp. CC9902] gi|78169641|gb|ABB26738.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49 [Synechococcus sp. CC9902] Length = 270 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 64/259 (24%), Positives = 127/259 (49%), Gaps = 6/259 (2%) Query: 39 ARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 ARI + G I + Q +++ + + R + AL++ + SPGG+ + I A+ +++ + Sbjct: 14 ARIVVEGPINGATRQRVLKALLEVKRRE-FPALLLRIDSPGGTVGDSQEIHAALLRLREK 72 Query: 97 K-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 V+ ++AS G I + IV+ ++ GSIGV+ + + +++G+ +V Sbjct: 73 GCRVVASFGNISASGGVYIGVGAEKIVSNPGTITGSIGVILRGNDLSRVFERIGIRFDTV 132 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215 KS K SP +NP+ ++Q ++DSSY FV +V++ RN+ + +DGR+++G Sbjct: 133 KSGKFKDILSPDRALNPEERALLQGLIDSSYSQFVGVVAKGRNLTEETVKTFADGRVFSG 192 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSISSLLED 274 +A +GL+D +G ++ + L + P+ L + S L+ Sbjct: 193 EQALSLGLVDELGDEDHALRLAAQLADLDQDDIRPITLGKPRRKVSNLLPGSQLFSQLQQ 252 Query: 275 TIPLMKQTKVQGLWAVWNP 293 + + Q LW ++ P Sbjct: 253 WLTMELMGSGQVLW-LYRP 270 >gi|15678828|ref|NP_275945.1| protease IV [Methanothermobacter thermautotrophicus str. Delta H] gi|2621896|gb|AAB85306.1| protease IV [Methanothermobacter thermautotrophicus str. Delta H] Length = 287 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 67/272 (24%), Positives = 134/272 (49%), Gaps = 13/272 (4%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI----------EDSQELIE 55 + K +++++++ + S + +E +A I + G I D ++ E Sbjct: 3 RNSKIVVGLVAVLSIAGLVLSLAGLLEGGEGTIAIIPVHGAIAYDTAGFSDGVDPDDIKE 62 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 I + D S A+++ ++SPGG+ A E + AI K + KPV++ + + S YL + Sbjct: 63 LIAEANSDPSVKAIVLDINSPGGTPVASEELMDAINK--SEKPVVSWISDSGTSGAYLAA 120 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 AS+ IVA+ ++ VGSIGV+ + ++G++ ++K+ K + + + + Sbjct: 121 SASDRIVASPSAWVGSIGVILDLTDLSQMYRQMGINKYAIKAGEYKDMGADYRMITDEER 180 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 QM+Q +V+ Y +F++ V+ +RN+ L++GRI+TG +A + L+D GG++ + Sbjct: 181 QMLQSMVNEEYDYFIKTVAANRNLSVSYVKSLAEGRIFTGRQAVRNRLVDFTGGKDYAVE 240 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 L ++ I PP + S Sbjct: 241 VAAKLAGVKNYNTI-TLEPPSGFLRVLSSMFS 271 >gi|37679336|ref|NP_933945.1| protease IV [Vibrio vulnificus YJ016] gi|37198079|dbj|BAC93916.1| protease IV [Vibrio vulnificus YJ016] Length = 626 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 129/282 (45%), Gaps = 14/282 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 ++ + + + N+ +A + G I D + + + DD A Sbjct: 317 ISYYDYRATMRDNFDANADDIAIVVASGTIMDGQQPRGTVGGDTVAGLLRQARNDDKVKA 376 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I +Q + KP++ + +AAS GY IS +++ I+A T+ Sbjct: 377 VVLRVDSPGGSAFASEVIRNEVQALKDAGKPIVVSMSSLAASGGYWISMSADKIIAQPTT 436 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + +KLG+ V +SP E + ++ A Q Q ++ Y Sbjct: 437 LTGSIGIFSVITTFEKGFNKLGIYTDGVGTSPFSGEGIS-TGLSKGASQAFQMGIEHGYQ 495 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI- 246 F+ LV ++R++ D ++ GR+WTG +A + GL+D +G ++ + ++ Sbjct: 496 RFISLVGDNRDLSLDAVDKVAQGRVWTGYDALQHGLVDQIGDFDDAVAEAAKMAQLENYN 555 Query: 247 -RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 +++ P + + + + I + + +Q + Sbjct: 556 LYWVEEPLSPTEQFIQEFMK-QVKISMGVDIQSILPSSLQPV 596 Score = 95.8 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 57/329 (17%), Positives = 115/329 (34%), Gaps = 43/329 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSS-HVEDNSPHVARIAIRGQIEDSQ-------- 51 + FV + +LS+ + VYF + P + + G I + Sbjct: 29 ITFVRLALTNLIFLLSVALVYFVYFYGHDTQPQVEQPSALVLNLSGPIVEQSLYINPMDS 88 Query: 52 -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93 ++++ I D+ T L++SL P + I +A+ + Sbjct: 89 FTSSLFGEEIPKENVLFDVVDTIRYAKDDEKITGLVLSLRDMPETNLTKLRYIAKALNEF 148 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K I + + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 149 KASGKPIYAIGAFYNQSQYYLASYADKIYLAPDGGVMLKGYSAFNLYYKTLLEKLDVTTH 208 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV----- 206 + K+ PF +++P A + + + FV V+ +RNI Sbjct: 209 VFRVGTYKSAIEPFVRDDMSPAAKESATRWLTQLWGAFVDDVANNRNIDPKTLNPSMEEF 268 Query: 207 LSDGRIWTGAEA---KKVGLIDVVGGQEEVWQSLYAL---GVDQSIRKIKDWNPP---KN 257 LS + G A K+GL+D + ++++ L D S + I ++ ++ Sbjct: 269 LSQLKSVNGDLAALSIKLGLVDELATRQQLRAQLAEKFGASGDDSYKAISYYDYRATMRD 328 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + + +++I + + G Sbjct: 329 NFDANADDIAIVVASGTIMDGQQPRGTVG 357 >gi|205352978|ref|YP_002226779.1| protease 4 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272759|emb|CAR37677.1| protease IV [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628052|gb|EGE34395.1| protease 4 [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 618 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 70/268 (26%), Positives = 120/268 (44%), Gaps = 14/268 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D +A I G I D +E +I D +++ ++SPGGS Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKTIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ L +GV V +SP+ S ++P+ QMMQ ++ Y F+ LV+++R Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L + + Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKL-KQWHLDYYQDEPTV 556 Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284 + +++ S ++L + I M + Sbjct: 557 LDMVMDSMTGSVRTMLPEAIQAMLPAPL 584 Score = 100 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S+ E + + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90 +++ I + D + T +++ L + G+ I +A+ Sbjct: 79 ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ VS +R I + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + DG T A L+D + +V ++L Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300 >gi|254428559|ref|ZP_05042266.1| peptidase, S49 (protease IV) family [Alcanivorax sp. DG881] gi|196194728|gb|EDX89687.1| peptidase, S49 (protease IV) family [Alcanivorax sp. DG881] Length = 324 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 122/282 (43%), Gaps = 16/282 (5%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISRDDSA 66 ++ L + + V+ S V HV + + G I Q+ ++ + R ++ Sbjct: 45 FIYLFTLLVMVIPGKTGSAVTMAEEHVGIVDVNGVIAPDQDASADLIVTGLTRAFEAENT 104 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCASNIIVA 123 TA+++ ++SPGGS ++ AI+++ K V + ++ AS Y I+ A++ I A Sbjct: 105 TAVLLKINSPGGSPVQSNQVYNAIKRLRAEYPDKKVYAAITDVGASGAYFIASAADEIYA 164 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 S+VGSIGV+ ++ DKLGV + + + K PFS + P + +Q ++D Sbjct: 165 DPASIVGSIGVIMAGFGLEQAADKLGVERRVLTAGENKDLMDPFSPIQPAHRKHVQTMLD 224 Query: 184 SSYHWFVRLVSESRNIPYDKT--LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 + F+ V E R L G WTG A +GLID + +V + + Sbjct: 225 DIHQQFITAVKEGRGDRLKVDSHPELFSGLFWTGERALDLGLIDGLMSPGQVIREVAGQ- 283 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 ++ +++ ++ ++ +S L Sbjct: 284 -----EEMLNYSSSRSPMEEFIRRFGVSIGEGMAAQLGLSAS 320 >gi|315929657|gb|EFV08835.1| signal peptide peptidase SppA, 36K type [Campylobacter jejuni subsp. jejuni 305] Length = 281 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 65/265 (24%), Positives = 126/265 (47%), Gaps = 2/265 (0%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64 +K I T + L+ + + S++ N ++ RI ++G+I DS ++E+I D Sbjct: 15 IKFINTYFKTFVLLLIVIWILIPSANSSSNLANLERIDLKGEIFDSSAVLEKIINAKNDS 74 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 + ++ + SPGG+ + AI+ +K +KPV+ AS YL +N I+A Sbjct: 75 NIKGVLFVIDSPGGAFAPSMELALAIKDLKIKKPVLVYASGTMASGSYLAGVGANKILAN 134 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 S +GSIGV+ Q + +KLG+ +++++ K+ + N +Q ++D Sbjct: 135 PASFIGSIGVIMQGADLSGLANKLGIKEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQ 194 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 SY F V++ R + +K ++ R++ A+AK++GLID + E + L L Sbjct: 195 SYDLFTGFVAKERALDLNKKDQWANARVFLAAKAKELGLIDELSNYENAKKELEKLANVS 254 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSIS 269 + + + + L+ + S Sbjct: 255 N--PVWKEEDKIDKFLNRLEGQTSS 277 >gi|54309756|ref|YP_130776.1| putative protease IV [Photobacterium profundum SS9] gi|46914194|emb|CAG20974.1| putative protease IV [Photobacterium profundum SS9] Length = 617 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 68/270 (25%), Positives = 121/270 (44%), Gaps = 17/270 (6%) Query: 34 NSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 + +A + G I D + DD A+I+ + SPGGSA+A E Sbjct: 322 SDNQIAVVVASGAIIDGTQRQGTVGGDSTAALLRDARLDDDIKAVILRVDSPGGSAFASE 381 Query: 85 AIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I + + + KPV+ + +AAS GY IS +++ I+A T++ GSIG+ + Sbjct: 382 VIRNEVDALKQAGKPVVVSMSSVAASGGYWISASADRIIAQPTTITGSIGIFAILTTFEK 441 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L+K+GV V ++P + E+ Q+ Q V+ Y F+ LVS+ RN+ ++ Sbjct: 442 GLEKMGVYSDGVGTTPF-SGVGVTRELPEGVGQVFQLGVEHGYKRFISLVSQYRNMSLEQ 500 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ GR+WTG +A ++GL+D +G ++ + L ++ P + L Sbjct: 501 ADKIAQGRVWTGQDAMELGLVDQLGDFDDAIAAAVELAKL-ESYELNWMEEPLSTAEQFL 559 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 SS + + M ++ P Sbjct: 560 --QQFSSDVSTKVATMVLGQLPSAL---QP 584 Score = 94.7 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 45/327 (13%), Positives = 109/327 (33%), Gaps = 39/327 (11%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + F + I + ++ + + V + E + + G I + + Sbjct: 19 ISFTRQLILNLFFLIIVGAIFVAFNYGEDTPEQPDKAALVLDLSGPIVEQRRYINPIDSI 78 Query: 52 ----------------ELIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVK 94 ++ E I + S D+ L+++L S I +AI + K Sbjct: 79 ASNVLGHPPAQDNVLFDITETIRKASADNKIEGLVLNLKGMSETSLTKLRYIAKAITEFK 138 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + + + Y ++ ++ + + V G Y K L+KL V+ Sbjct: 139 AAGKPVYAYGDNFGQSQYYLASYADKVFMSPDGGVMLTGYGSYSLYYKSLLEKLNVNTHV 198 Query: 155 VKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP--------YDKT 204 + K+ P+ +++ A + ++ + F V+ +R+I D Sbjct: 199 FRVGTYKSFVEPYTRDDMSAPAREANTVWLNQLWGAFTTDVANNRHIDAATLTPNIDDFV 258 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI---RKIKDWNPPKNYWFC 261 L + K+GL+D + + ++ + +I + Sbjct: 259 QALKAVDGDFAKLSLKMGLVDELISRPQLRNKMIKEFGSDGEHSFNQISYYEYQPTIINT 318 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 DL + + +++ + ++ T+ QG Sbjct: 319 DLPSDNQIAVVVASGAIIDGTQRQGTV 345 >gi|17232082|ref|NP_488630.1| protease IV [Nostoc sp. PCC 7120] gi|17133726|dbj|BAB76289.1| protease IV [Nostoc sp. PCC 7120] Length = 609 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 62/266 (23%), Positives = 119/266 (44%), Gaps = 9/266 (3%) Query: 31 VEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAY 81 +++ +A + G I D +I +D++ A+++ ++SPGGSA Sbjct: 310 EKNSKNKIAVVYAEGDIVDGKGDDGQIGGDRFARIFNKIRQDENVKAVVLRINSPGGSAT 369 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 A E + R I+ + KPV+ + + AAS GY I+ SN I A ++ GSIGV Sbjct: 370 ASEVMQREIRLTRESKPVVVSMGDYAASGGYWIATDSNRIFAEPNTITGSIGVFGVLFNG 429 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + + G++ +VK++ + +P+ + + Q VD Y+ FV V++ R +P Sbjct: 430 QKLANDNGITWDAVKTARYADSQTVARPKSPQEIAIYQRSVDRIYNMFVNKVAQGRKLPT 489 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 K ++ GR+W+G AK++GL+D +GG + +++++ ++ Sbjct: 490 QKVAEIAQGRVWSGVTAKQIGLVDEIGGLNAAIEYAAKAAKLGKDWQLREYPRESSFEER 549 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287 + I + L Sbjct: 550 FFGGVVEEISTTLGIKKLDVKPNDPL 575 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 93/234 (39%), Gaps = 5/234 (2%) Query: 51 QELIERIERISRDDSATALIVSLS--SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + +I+ +E+ RD A+ + S + + I +A+++ + + Sbjct: 87 RNVIDSLEKAQRDKRIVAIYLDGSRGGNNLGFASLKEIRKALEEFRKSGKKVIAYGVAWD 146 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167 Y +S ++ I + G+ Q ++ L K G+ ++ V++ K PF Sbjct: 147 EKEYYLSSVADTIALNPLGGLEINGLSSQPMFLAGALQKYGIGVQVVRAGKFKGAVEPFL 206 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGAEAKKVGLID 225 +++P+ + Q ++D + + V SR I K ++D + + EAK GL+D Sbjct: 207 LDKLSPENREQTQKLLDDVWGEWRTTVGNSRKINPQKLQAIADNQSLLEATEAKTNGLVD 266 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 V ++V L L + Y ++L + ++ I ++ Sbjct: 267 QVAYNDQVVADLKKLTGSNKKDNTFTQISLRRYAQVPGQSLGLEKNSKNKIAVV 320 >gi|242310759|ref|ZP_04809914.1| protease IV [Helicobacter pullorum MIT 98-5489] gi|239523157|gb|EEQ63023.1| protease IV [Helicobacter pullorum MIT 98-5489] Length = 291 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 71/275 (25%), Positives = 135/275 (49%), Gaps = 6/275 (2%) Query: 2 EFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERIS 61 +F++K K ++ + + F+ S +N +VARI ++G I S +E I + Sbjct: 12 DFIMKYFKALVLL----LIVFLIFAPSFKESENPANVARIDLKGAILQSDSFLEEITELE 67 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 + + +++ + SPGG+ I + I+++KN+KP++ AS Y+ +N I Sbjct: 68 NNPNIKGILLVIDSPGGAIAPSVEISQTIKRIKNKKPIVAYAQGSMASGSYMAGMWANKI 127 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 VA S++GSIGV+ V +KLG+ + +K+ K + N + +M++++ Sbjct: 128 VANSGSMIGSIGVILNGVDVSELAEKLGIKTQILKAGIYKEAGTFMRPWNKQEEEMLRNL 187 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 ++ Y FV+ V E+R + K + GRI + A K+GLID VGG E +L+ L Sbjct: 188 INEQYWLFVKEVVEARKLDIKKEKDFAQGRILSANNALKLGLIDSVGGIYEAQNTLFELA 247 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 + +K + + + ++S ++ I Sbjct: 248 KIEEPMWLK--KDKMDLYLERIIGENVSLGIQRAI 280 >gi|251789811|ref|YP_003004532.1| signal peptide peptidase SppA, 67K type [Dickeya zeae Ech1591] gi|247538432|gb|ACT07053.1| signal peptide peptidase SppA, 67K type [Dickeya zeae Ech1591] Length = 616 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 64/267 (23%), Positives = 117/267 (43%), Gaps = 14/267 (5%) Query: 30 HVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSA 80 ++ +A + G I D +I D A+I+ ++SPGGS Sbjct: 318 PPAVSTNEIAVVFASGTIVDGNETPGYVGGDTTAAQIRDARLDPKVKAIILRVNSPGGSV 377 Query: 81 YAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A E I + + KPV+ + MAAS GY +S +N+I+A+ ++L GSIG+ Sbjct: 378 TASELIRSELMAARQAGKPVVVSMGGMAASGGYWVSTPANVIIASPSTLTGSIGIFGVVT 437 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + LD +GV V +SP+ + +A Q+MQ ++ Y F+ LV++SR Sbjct: 438 TFENALDSIGVHTDGVATSPLADLSQT-KALPSQASQLMQISIERGYQNFISLVAQSRRK 496 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 + ++ G +W G++AK GL+D +G ++ + L ++ + + Sbjct: 497 TTQEVDAIAQGHVWVGSDAKTNGLVDQLGDFDDAVKKAAELAKL-EQYQLSWYTEESDLL 555 Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQG 286 + + S + +P Q + Sbjct: 556 --NAMFTQVRSAVYAMLPSALQAVIPA 580 Score = 95.8 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 47/298 (15%), Positives = 103/298 (34%), Gaps = 44/298 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + F + I +++ ++ VY + + + + + G + D Sbjct: 19 LNFTREFILNLFLICLILVGIGVYSQLKTPQAEPARGALLLDLTGVVVDKPSVNNKLRQF 78 Query: 52 ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92 ++++ I + D + T +++ LS G+ + I +A+++ Sbjct: 79 GREFFGVSASRHQENSLFDIVDSIRQAKDDSNITGMVMDLSDFVGADQPSLQYIGKALRE 138 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 ++ I V + Y ++ +N I + G Y K LDKL V+ Sbjct: 139 FRDAGKPIFAVGDNFNQTQYYLASFANKIYLTPQGNIDLHGFATNNLYYKTLLDKLKVTA 198 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203 + K+ PF +++P A + + + + ++ V+ +R I + Sbjct: 199 HIFRVGTYKSAVEPFIRDDMSPDAREADNRWISTLWQHYLDTVAANRQITPQQLFPGAEK 258 Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA------LGVDQSIRKIKDWNP 254 L T A L+D V + V Q+L + + I D+ P Sbjct: 259 ILANLQTVDGDTARYALDNKLVDEVASRSMVEQALIKAFGWDAKTKNFNFTSIYDYTP 316 >gi|118581390|ref|YP_902640.1| signal peptide peptidase SppA, 36K type [Pelobacter propionicus DSM 2379] gi|118504100|gb|ABL00583.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Pelobacter propionicus DSM 2379] Length = 320 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 124/282 (43%), Gaps = 20/282 (7%) Query: 31 VEDNSPHVARIAIRGQIEDSQE---------------LIERIERISRDDSATALIVSLSS 75 + + + + I G I + ++ + E +++ +DD +I+ + S Sbjct: 40 EGEGAKKILLLDISGTISEKEKPGGLVGADRPSTVSLIREALQKAEKDDRIAGVILRIDS 99 Query: 76 PGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 PGGS A + I I + K R+ PV + + AS GY + A++ I+A T++ GSIG Sbjct: 100 PGGSVTASDIIHHDITEFKKRRRIPVHACIMGVGASGGYYAAAAADRIIAHPTAITGSIG 159 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V+ + L KLG+ ++VKS K S F P+ ++ Q++++ + F+ +V Sbjct: 160 VILMKFNLAGLLGKLGIEEQAVKSGDKKDFFSLFRRATPEEEKLAQEIINQLHSRFLDVV 219 Query: 194 SESRNIPY--DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 + D+ L+DGRI+T +A + L+D G ++V ++ D ++ Sbjct: 220 MQRPGNRLSRDELARLADGRIYTAGQALQARLVDGTGYLDDVISAMRKQIKD-EQARVVS 278 Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 + P +Y S L + + +W P Sbjct: 279 YYRPGSYLGSIYDGREAKSSLVGMLGATSEFSGGSFMYLWQP 320 >gi|260911480|ref|ZP_05918069.1| signal peptide peptidase SppA [Prevotella sp. oral taxon 472 str. F0295] gi|260634409|gb|EEX52510.1| signal peptide peptidase SppA [Prevotella sp. oral taxon 472 str. F0295] Length = 591 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 69/277 (24%), Positives = 132/277 (47%), Gaps = 17/277 (6%) Query: 30 HVEDNSPHVARIAIRGQIED--------------SQELIERIERISRDDSATALIVSLSS 75 V ++ +A G+I S+++ + +E + DD A+++ ++S Sbjct: 296 DVNTDNGTIAIYYAEGEIVQIAPGGMLNNSTNIVSKDICKNLEDLKNDDDIKAVVLRVNS 355 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 PGG AYA E I+ + +++ +KPV+ + + AAS GY +SC +N IVA +L GSIG+ Sbjct: 356 PGGDAYASEQIWHQVTELRKKKPVVVSMGDYAASGGYYMSCGANWIVAEPNTLTGSIGIF 415 Query: 136 FQYPYVKPFL-DKLGVSIKSVKSSPM-KAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 +P + + +KLGV VK++ + + M+Q V+ Y F+ V Sbjct: 416 GVFPDLSGLVTEKLGVKFDEVKTNANSAFGNIAARPFSATEMAMLQGYVNRGYATFLNRV 475 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 S+ R + D ++ GR+W G EA K+ L+D +GG +E + L + + ++ Sbjct: 476 SQGRKMSVDNIDKIAQGRVWLGNEALKIKLVDQLGGIKEAVEKAAQLAKLKD-YGLAEYP 534 Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 P ++ ++ + L++ + L + + Sbjct: 535 APASWQDQLFNSVVPRNTLDEQLRLTLGAAYEPFMLI 571 Score = 93.5 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 90/271 (33%), Gaps = 28/271 (10%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--------------- 47 F+ I ++M+S++ + S + + V I + G I Sbjct: 16 FLFCAISFAFMMMSIIGMIA---STDTETKLKDNSVLTINLSGSINEMAAPNVLGFLSGN 72 Query: 48 ----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 +++ I++ +D + + + + A+ K I Sbjct: 73 TIENTGLNDMLLAIKKAKNNDDIKGIYLEGGPLIAGFSTLQELRDALVDFKKSGKWIVAY 132 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 + Y ++ +N I V G+ Q Y+K K G+ + K K+ Sbjct: 133 ADTYTQGCYYVASVANHIYLNPQGQVDWHGLASQPYYIKDLAAKFGIKYQVAKVGTFKSA 192 Query: 164 PSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221 F+E ++ + ++ + + VSESR I +D + +A+ + Sbjct: 193 TEMFTETKMSDANRLQVSMYLNGLWTNVCKAVSESRKISIPTLNTYADEYQFFA-DAQSL 251 Query: 222 ---GLIDVVGGQEEVWQSLYALGVDQSIRKI 249 +D + ++V + L + + I Sbjct: 252 VRKRFVDKLLYADQVKGEVKKLLRIDADKSI 282 >gi|149910099|ref|ZP_01898746.1| putative protease IV [Moritella sp. PE36] gi|149806824|gb|EDM66786.1| putative protease IV [Moritella sp. PE36] Length = 620 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 74/275 (26%), Positives = 128/275 (46%), Gaps = 14/275 (5%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPG 77 + + P V I GQI D + L + + + D+ AL++ + SPG Sbjct: 320 FEQQGFASKPGVGIIFANGQILDGNQPPGAIGGKSLTKLLLQAKDDEQIKALVLRIDSPG 379 Query: 78 GSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GSA+A E I A+ ++K KPVI + +AAS GY I+ A++ I A T++ GSIG+ Sbjct: 380 GSAFASEQIRTALLELKKSGKPVIVSMGSVAASGGYWIASAADEIWAKPTTITGSIGIFG 439 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + + L K+G+ V ++ S E+ Q++Q V++ Y F+ +V+E Sbjct: 440 LFATTEKLLAKMGIYSDGVGTTDF-TGLSVNRELPEHMAQIIQMTVENGYSNFLTVVAEG 498 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R + ++ ++ GR+WTG +A +GLID +G ++ S A + I P + Sbjct: 499 RGMTTEEVDKIAQGRVWTGRDALNLGLIDNLGNLDDAIASAAAKVDVSTDSLILIQTP-R 557 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 + L + S ++ + G A W Sbjct: 558 SERDRLLSIFTQSVAMQ--VLSELNISPNGNVATW 590 Score = 73.5 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 53/336 (15%), Positives = 113/336 (33%), Gaps = 50/336 (14%) Query: 1 MEFVLKKI-----KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-------RIAIRGQIE 48 + F+L KI TR ++L+L ++ + + + VA + + G + Sbjct: 8 LGFILSKIGRSITFTRNLILNLFFISFIAIIIIALQQQKETPVAFADNTALVLNLNGVLV 67 Query: 49 DS--------------------------QELIERIERISRDDSATALIVSLSSP-GGSAY 81 D +++ I DD+ +ALI+ L+ S Sbjct: 68 DQPKLVDPFDQVIGELVDANNVVNEIAISDVVNVIISAKSDDAISALILDLAQLKPASLT 127 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 I A+ + K I + + YL++ ++ I+ V G Y Sbjct: 128 KLTDIADALVEFKKSNKPIYAYGDYFSQEQYLLASFADEILLNPAGGVLLQGYGSYSLYF 187 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 K +DKL +S + K+ PF+ +++ ++ + + ++ + + +V+ +R I Sbjct: 188 KDAIDKLNLSSHVFRVGTYKSFVEPFTRSDMSAESKEAKLNWLNQLWDTYTSIVANNRLI 247 Query: 200 PYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY-ALGVDQSIRKIK 250 D L A K L+D + +E++ + L L + Sbjct: 248 NADDVAPKADVFIKQLQSVNGNIAQYALKQKLVDKLLTREQITEYLANKLNGESDSFAKI 307 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 ++ + +S I + G Sbjct: 308 EFLDYLALQSTQFEQQGFASKPGVGIIFANGQILDG 343 >gi|282860141|ref|ZP_06269217.1| signal peptide peptidase SppA, 67K type [Prevotella bivia JCVIHMP010] gi|282587128|gb|EFB92357.1| signal peptide peptidase SppA, 67K type [Prevotella bivia JCVIHMP010] Length = 592 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 68/244 (27%), Positives = 124/244 (50%), Gaps = 2/244 (0%) Query: 44 RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 +G++ D+Q++ + + +++ ++S A+++ ++S GGSAYA E I+ I ++K +KPV+ + Sbjct: 326 QGEVIDAQKVCKDLAKLAEEESVKAVVLRINSGGGSAYASEQIWHQIMELKKQKPVVVSM 385 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKA 162 +AAS Y S +N IVA T+L GSIG+ +P L +KLGV V ++ A Sbjct: 386 GGLAASGAYYSSAPANWIVANPTTLTGSIGIFGMFPDTSGLLTEKLGVKFDEVATNKYAA 445 Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVG 222 SP N ++++ +D Y F V+E R + + L+ G ++TG AK +G Sbjct: 446 FGSPARPFNADELRILGQYIDRGYALFRHRVAEGRKMTEQQVEQLAQGHVYTGEYAKTIG 505 Query: 223 LIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282 L+D +GG + L I D+ P + ++ + + L++ + Sbjct: 506 LVDELGGIDVAIAKAAKLARLTD-YAIADYPAPMGWLEQLMQQNVVDNYLDEKLKAQLGD 564 Query: 283 KVQG 286 Q Sbjct: 565 FYQP 568 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 92/266 (34%), Gaps = 26/266 (9%) Query: 10 TRYVMLSLVTLTVVYFSW-SSHVEDNSPHVARIAIRGQIEDSQ----------------- 51 +V ++ ++ + E V I + G + D + Sbjct: 20 FIFVAFLFGSIMLLALAVDGDETEIKDNSVLAINLTGIMNDRERGSNPLEKLVGEVATPV 79 Query: 52 ---ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 ++ IE +D + + + S + +A+ + + + Sbjct: 80 SLNTFLQGIEEAKTNDKVKGIYLEAGAFQADSYATLQEARKALVDFEKSGKWVIAYADTY 139 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 Y ++ A+ + + ++ GV Q ++K L K GV ++ K K+ F Sbjct: 140 TQQAYYLASAATKVYLNPSGMIDWHGVASQPMFLKDALAKFGVKMQVAKVGKYKSATEMF 199 Query: 168 SE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA--EAKKVGL 223 +E ++ + + + ++ V+ V SR + + +D I A + +++ L Sbjct: 200 TEDKMSEPNREQTKAFISGIWNNVVKEVGASRKLTTAQLNQYADSAITFAAPTDYQRMKL 259 Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKI 249 +D + +++ + + A + Sbjct: 260 VDGLLYTDQIKKVVMAKMGVDDADDL 285 >gi|87306471|ref|ZP_01088618.1| endopeptidase IV; signal peptide peptidase [Blastopirellula marina DSM 3645] gi|87290650|gb|EAQ82537.1| endopeptidase IV; signal peptide peptidase [Blastopirellula marina DSM 3645] Length = 349 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 54/312 (17%), Positives = 127/312 (40%), Gaps = 27/312 (8%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFS--------------WSSHVEDNSPHVARIAIRGQIED 49 ++ + +M + + + V + + S + + +A I + G I + Sbjct: 25 IIAFVGWLGLMFAGLIIIVQLAATAQYFNEEDGVSEKYYSGDKMATDKIALIRVEGLIME 84 Query: 50 SQELIE-RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + I +I+ +D + A+++ + SPGGS A + I+ + +++ + + V ++ Sbjct: 85 GEGYIRNQIDLARKDKNVKAIVLRVDSPGGSVSASDYIYHHLNELREDREIPLVVSMGSS 144 Query: 109 SAGYLISCAS------NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 + A ++I A T++ GSIGV+ + V L + + S+ S K Sbjct: 145 ATSGGYYVAMAVGDEKDVIFAEPTTITGSIGVIIPHYDVSGLLAEYHIKDDSIASHERKQ 204 Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN---IPYDKTLVLSDGRIWTGAEAK 219 S + +++Q +V+ + F+ +V R DK L+ G ++ +A Sbjct: 205 MLSMTRTMPEDQRELVQGLVNDMFERFLDVVKTGRPAYVEDPDKLKELATGEVYLTDQAI 264 Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278 ++GL+D VG E + L ++ + P + + + + S ++ E + Sbjct: 265 ELGLVDKVGFVEAAIERAAELAKLDAKKTRVVAYKKPVSLF--GIGSASAANPTESLMNA 322 Query: 279 MKQTKVQGLWAV 290 + + + Sbjct: 323 VLNVTSPKAYYL 334 >gi|255320325|ref|ZP_05361509.1| periplasmic serine protease [Acinetobacter radioresistens SK82] gi|262379389|ref|ZP_06072545.1| signal peptide peptidase SppA, 36K type [Acinetobacter radioresistens SH164] gi|255302520|gb|EET81753.1| periplasmic serine protease [Acinetobacter radioresistens SK82] gi|262298846|gb|EEY86759.1| signal peptide peptidase SppA, 36K type [Acinetobacter radioresistens SH164] Length = 338 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 67/299 (22%), Positives = 130/299 (43%), Gaps = 26/299 (8%) Query: 6 KKIKTRYVMLSLVTLTVVY---------FSWSSHVEDNSPHVARIAIRGQI------EDS 50 ++ + L+ + ++ + S ++ H+A I I G I +S Sbjct: 41 RRWGIFFKCLTFAYILLLLLMMGRGCTTATTSGAGSSSNAHLAVIDIIGTIDSSDRSVNS 100 Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMA 107 ++ + ++R ++ A++++++SPGGS + I++ I+ K V + +M Sbjct: 101 EDTNKALKRAFEAKNSQAIVLNINSPGGSPVQSDEIWQEIRYYKQQYPEKKVYALIGDMG 160 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 AS Y I+ A++ I +SLVGSIGV+ V KLGV +++ S K S Sbjct: 161 ASGAYYIASAADEIWVNPSSLVGSIGVIMPNYGVMGLAQKLGVEDRTLTSGDNKDILSMT 220 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDV 226 VNP + +Q V+D+ + F+ V E R + G W+G +A K+G+ D Sbjct: 221 KPVNPAQREHVQAVLDNVHSHFIAAVKEGRGKRLKSNDPAIFSGLFWSGEQAVKLGVADR 280 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 G + + L + + D+ ++ + L + + + +Q K+Q Sbjct: 281 TGSINSLKREL-------KLDNVLDYTVQRSPFESVLGRVGSEIGQGFSESVTQQLKIQ 332 >gi|298491184|ref|YP_003721361.1| signal peptide peptidase SppA ['Nostoc azollae' 0708] gi|298233102|gb|ADI64238.1| signal peptide peptidase SppA, 36K type ['Nostoc azollae' 0708] Length = 273 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 62/260 (23%), Positives = 122/260 (46%), Gaps = 5/260 (1%) Query: 36 PHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 +ARI I G I + ++E ++ + L++ + SPGG+ + I+ A++++ Sbjct: 11 KQIARIEITGVIAGATRTRVLEALKTVEE-KKFPGLLLRIDSPGGTVGDSQEIYSALKRL 69 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + ++ ++AS G I + I++ ++ GSIGV+ + ++ L+K+GVS K Sbjct: 70 GKKTKIVASFGNISASGGVYIGMGAEHIMSNPGTITGSIGVILRGNNLERLLEKVGVSFK 129 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 +KS P K S E+ ++Q ++D SY FV+ ++E+R + + +DGRI+ Sbjct: 130 VIKSGPYKDILSFDRELTEAEENILQQLIDVSYQQFVQTIAEARYLAVETVKGFADGRIF 189 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLKNL-SISSL 271 TG +A ++G++D +G +E+ + L D K L S Sbjct: 190 TGEQAVELGVVDRLGTEEDARRWTAELVGLDPEKTPCYTLEERKPLLSRVLPGSRQTKSG 249 Query: 272 LEDTIPLMKQTKVQGLWAVW 291 + I ++ +W Sbjct: 250 IRAGIDWLEFEVSTSGLPLW 269 >gi|288927850|ref|ZP_06421697.1| signal peptide peptidase SppA, 67K type [Prevotella sp. oral taxon 317 str. F0108] gi|288330684|gb|EFC69268.1| signal peptide peptidase SppA, 67K type [Prevotella sp. oral taxon 317 str. F0108] Length = 591 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 68/279 (24%), Positives = 133/279 (47%), Gaps = 17/279 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIED--------------SQELIERIERISRDDSATALIVSL 73 S + + +A G+I S+++ + +E + DD A+++ + Sbjct: 294 SQDADTDDGTIAIYYAEGEIVQIAPGGMFNNSTNIVSKDICKDLEDLKNDDDIKAVVLRV 353 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 +SPGG AYA E I+ + +++ +KPV+ + + AAS GY +SC +N IVA +L GSIG Sbjct: 354 NSPGGDAYASEQIWHQVTELRKKKPVVVSMGDYAASGGYYMSCGANWIVAEPNTLTGSIG 413 Query: 134 VLFQYPYVKPFL-DKLGVSIKSVKSSPM-KAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 + +P + + +KLGV VK++ N + M+Q ++ Y F+ Sbjct: 414 IFGVFPDLSGLVTEKLGVKFDEVKTNANSAFGNVAARPFNTAEMAMLQGYINRGYATFLN 473 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 VS+ R +P ++ GR+W GA+A K+ L+D +GG ++ + L + + + Sbjct: 474 RVSQGRKMPVTNLDKIAQGRVWLGADALKIKLVDQLGGIKDAVEKAAQLAKIKD-YGVSE 532 Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + P ++ ++ + L++ + L + + Sbjct: 533 YPAPASWQDQLFNSVVPRNTLDEQLRLTLGAAYEPFMLI 571 Score = 95.4 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 79/260 (30%), Gaps = 23/260 (8%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQEL 53 ++++ + S + + V I + G I ++ Sbjct: 23 FAFMIMSIIGMIASADTETKLKDNSVLTINLSGTISEMAAPDVLGFLSGNTIENNGLNDM 82 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 + I + +D + + + + A+ K I + Y Sbjct: 83 LLAIRKAKNNDDIKGIYLEAGPLVAGFSTLQELRDALADFKKSGKWIVAYGDTYTQGCYY 142 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VN 171 ++ +N I V G+ Q Y+K K GV + K K+ F+E ++ Sbjct: 143 VASVANHIFLNPQGQVDWHGLSSQPYYIKDLAAKFGVKYQVAKVGTFKSATEMFTETKMS 202 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD--GRIWTGAEAKKVGLIDVVGG 229 + ++ + + VSESR I +D K +D + Sbjct: 203 DANRLQVSMYLNGLWANVCKAVSESRKISIPALNTYADEYQLFADAQSLVKKRFVDKLLY 262 Query: 230 QEEVWQSLYALGVDQSIRKI 249 ++V + L S + I Sbjct: 263 ADQVKGEVKKLLGIDSDKSI 282 >gi|108757755|ref|YP_631990.1| signal peptide peptidase SppA [Myxococcus xanthus DK 1622] gi|108461635|gb|ABF86820.1| signal peptide peptidase SppA [Myxococcus xanthus DK 1622] Length = 605 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 123/266 (46%), Gaps = 15/266 (5%) Query: 35 SPHVARIAIRGQI----------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 +P VA + + G I S+ +++ + RD + A++V +SSPGG+ A E Sbjct: 311 NPRVAVVPVSGIIIPGKGASGKMATSETVVKALRAAGRDKRSKAVVVYISSPGGTPLASE 370 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + A+Q+V +KPVI + + ASAGY+++ + I +A ++VGSIGV + Sbjct: 371 QMLEAVQRVARKKPVIAYMDRVCASAGYMVAVGAKEIWSAPHAMVGSIGVFAGKFDMSGL 430 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 ++KLGV + A S P+ ++ V+ Y F+ +V++ R ++ Sbjct: 431 MEKLGVHKTVLVRGQNAAMLSFSRGFTPQEEATLEAEVEEMYQAFLDIVAKGRGRTKEEI 490 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN---PPKNYWFC 261 L++GR+++G K VGL+D V G EE + +L + + + P + Sbjct: 491 HQLAEGRVYSGVRGKAVGLVDQVAGFEEACRHALSLAKVPAAERFEIMTYGAPKQRVNLL 550 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287 L + + P + GL Sbjct: 551 KLLMGASHAQTYALCPT--ALSLNGL 574 Score = 73.5 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 76/193 (39%), Gaps = 2/193 (1%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 + + L E +E +++D +++ + A +A+ ++ + + + Sbjct: 82 VTSVERLRESLELLAKDGRVKGILLEVEDLAVPAAKRDALVAVLRAFRAQGKRVVGWAVH 141 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + GY + C+++ ++ V +G + + L ++G+ + ++ K P Sbjct: 142 VDNEGYALLCSADEVLLPPMGRVELVGYAAESTALGVGLSRVGIRPQFIRRGDYKTAPEL 201 Query: 167 FSEV--NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLI 224 F+ + + ++ +D Y + +V+ R ++ L D ++ A GL Sbjct: 202 FTRPVVSDIQTRTVESFLDERYADLLDVVARGRRKTPEEVRALIDQGPFSARRAVDAGLA 261 Query: 225 DVVGGQEEVWQSL 237 D + + + L Sbjct: 262 DALVSEANLPAYL 274 >gi|85713271|ref|ZP_01044295.1| Periplasmic serine protease, ClpP family protein [Idiomarina baltica OS145] gi|85692915|gb|EAQ30889.1| Periplasmic serine protease, ClpP family protein [Idiomarina baltica OS145] Length = 562 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 121/252 (48%), Gaps = 14/252 (5%) Query: 31 VEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAY 81 E +A + RGQI + + D+ A+++ + SPGGS + Sbjct: 267 AESKKDQIAVVVARGQIVNGTQRAGMIGGDSTAALLRKAGEDERTKAVVLRIDSPGGSGF 326 Query: 82 AGEAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 A E I + I ++K + + + +AAS GY I+ ++ I AA T++ GSIGV Sbjct: 327 ASEIIRQEILQLKEKGIPVIASMSSVAASGGYWIAAEADEIWAAPTTITGSIGVFGLVMT 386 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 ++ +GV SV ++ +++ + ++ +++Q ++ Y +F+ +V+E+RN+ Sbjct: 387 LEDSAAAIGVHSDSVSTTEIESLNTL-EGISDSQARILQRSTENFYQFFITMVAEARNMT 445 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK---IKDWNPPKN 257 + ++ GRIWTG +A + GL+D +G ++ Q+ +D +P + Sbjct: 446 PEAVDDVAQGRIWTGRQALERGLVDNLGDFDDAIQAAAKRADLNDYTVNTITQDLSPQQQ 505 Query: 258 YWFCDLKNLSIS 269 ++ + S+S Sbjct: 506 FFANLMGQTSLS 517 Score = 77.0 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 73/209 (34%), Gaps = 11/209 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 ++I+ IE+ DD AL + LS+ S +A+ A+ K K I + Sbjct: 37 SDVIDAIEKAKTDDRIGALYLDLSALYPSGVNKLQAVGEALSDFKTSKKPIIAAGDYFEQ 96 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y ++ ++ + V G + Y K LDKL V K KA PF Sbjct: 97 YQYYLASYADKVYLNPLGSVAFDGFDYSQVYFKELLDKLKVKPHVFKVGTYKAAVEPFIR 156 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESR--------NIPYDKTLVLSDGRIWTGAEAK 219 + ++ +A + + + D+ + F V+ R D A Sbjct: 157 NSMSDEAREANEYLYDAMWENFKADVTAQRQLSDTITSGQLDDYMAAFESANGDMAQMAL 216 Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+D + + E+ L L K Sbjct: 217 DTNLVDALKTRTEIRNELINLSGYDEDAK 245 >gi|114332358|ref|YP_748580.1| peptidase S49 [Nitrosomonas eutropha C91] gi|114309372|gb|ABI60615.1| peptidase S49 [Nitrosomonas eutropha C91] Length = 317 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 62/265 (23%), Positives = 113/265 (42%), Gaps = 11/265 (4%) Query: 8 IKTRYVMLS-LVTLTVVYFSWSSHVEDNS--PHVARIAIRGQIE-----DSQELIERIER 59 I R + S L TL W H A + +RG+I ++ + +++ Sbjct: 36 IFFRLLTFSYLFTLLFWGLGWLDTEATGGFGKHTALVDLRGEITADGLNSAENINTGLKK 95 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISC 116 D + A+I+ ++SPGGS +I I ++ P+ V ++ AS GY I+ Sbjct: 96 AFEDKNTAAVILRINSPGGSPVQAGSINDEIHRLRTQHPDIPLYAVVEDICASGGYYIAV 155 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 A++ I + S+VGSIGVL L+KLG+ + + + K PFS +P + Sbjct: 156 AADKIFVDKASIVGSIGVLMDGFGFTGTLEKLGIERRLLTAGENKGFLDPFSPSDPGQRE 215 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 + ++ + F+++V + R + G +WTGA + ++GL D +G + V + Sbjct: 216 HAKKMLVEIHQQFIQVVQDGRGDRLKDNPEIFSGMVWTGARSIELGLADALGSMDYVARE 275 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFC 261 + + F Sbjct: 276 VIQAERIVDYTVQEGITERFAKRFG 300 >gi|77166296|ref|YP_344821.1| peptidase S49, SppA [Nitrosococcus oceani ATCC 19707] gi|254435484|ref|ZP_05048991.1| peptidase, S49 (protease IV) family [Nitrosococcus oceani AFC27] gi|76884610|gb|ABA59291.1| Peptidase S49, SppA [Nitrosococcus oceani ATCC 19707] gi|207088595|gb|EDZ65867.1| peptidase, S49 (protease IV) family [Nitrosococcus oceani AFC27] Length = 325 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 14/241 (5%) Query: 36 PHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 PH A + I G I + + + ++ ++ LI+ ++SPGGS I I Sbjct: 75 PHTALVKIEGIIGSDSFANAENIKKGLKAAFENEHIAGLILHINSPGGSPVQANQINDQI 134 Query: 91 QKVKNRKPVI---TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 +++ P I + ++ AS GY I+ A++ I A + S+VGSIG L ++K Sbjct: 135 HQLRKEHPNIPIHAVITDICASGGYYIAVAADQIYADKASIVGSIGALINSFGFVEAMEK 194 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 LG+ + + K PFS + Q +Q ++D+ + F+++V ++R L Sbjct: 195 LGIERRLFTAGDYKGFLDPFSPMKEFESQHIQKMLDNIHKQFIQVVKDNRGERLKNDSSL 254 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 G +WTG +A +GLID +G V + + KI D+ P + L Sbjct: 255 FSGLVWTGEQAIDLGLIDGLGNSNYVAREIIG------AEKIVDYTPQPKLLDRFSRQLG 308 Query: 268 I 268 Sbjct: 309 A 309 >gi|24214825|ref|NP_712306.1| periplasmic serine protease [Leptospira interrogans serovar Lai str. 56601] gi|45657659|ref|YP_001745.1| endopeptidase IV [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24195838|gb|AAN49324.1| periplasmic serine protease [Leptospira interrogans serovar Lai str. 56601] gi|45600899|gb|AAS70382.1| signal peptide peptidase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 328 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 78/287 (27%), Positives = 135/287 (47%), Gaps = 29/287 (10%) Query: 31 VEDNSPHVARIAIRGQIEDS----------QELI----ERIERISRDDSATALIVSLSSP 76 N + I I G I D ++ +++E D A+I+ ++SP Sbjct: 43 SGQNEDKILIIPIDGVISDEGEKNFFGGQEDSILVEVKKQLELAELDPEIKAVILKINSP 102 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GGS A + I+R I + K +K PV++ + AAS Y IS A+++++A TS+ GSIGV Sbjct: 103 GGSVTASDIIYREILQFKTKKKIPVVSLFMDTAASGAYYISMATDLLIAHPTSVTGSIGV 162 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + VK LDKLG+ +S++S K SP E++P+ +++Q +VD + F +V Sbjct: 163 ILSGINVKEGLDKLGIKDQSIRSGGNKTIGSPLEELSPEQRKLLQSIVDDLFEKFFDIVK 222 Query: 195 ESR-NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-----IRK 248 + R + ++DGRI+T ++A + GLID +G + Q AL + + Sbjct: 223 KGRPGKNPSELRKVADGRIFTASQALQHGLIDKIGYFDNAVQETMALSNYKKNPGNTNPR 282 Query: 249 IKDWN----PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 I + N++ L S + + +Q + +W Sbjct: 283 IIYYTRSTNQRTNFYQVQSTELKPDSTISKILGTSRQVR---FLYLW 326 >gi|237740732|ref|ZP_04571213.1| protease IV [Fusobacterium sp. 2_1_31] gi|229422749|gb|EEO37796.1| protease IV [Fusobacterium sp. 2_1_31] Length = 294 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 55/237 (23%), Positives = 111/237 (46%), Gaps = 11/237 (4%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70 ++ + +A I + G+I + ++E++E + + L+ Sbjct: 10 FGEYISAYKRKKNKSKNTIAVINLEGEIDTRESREAVINYDNVVEKLETLEDIKNLKGLV 69 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + ++SPGGSA E I++ ++K+ P+ + + AS GY I+ + A +L G Sbjct: 70 LRINSPGGSALESEKIYQKLKKL--EIPIYISMGDFCASGGYYIATVGKKLFATPVTLTG 127 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ YP ++KL V+++ FS+++ ++ + + ++ Y F Sbjct: 128 SIGVVILYPEFSETINKLKVNMEGFSKGKGFDIFDVFSKLSEESKEKIVYSMNEVYSEFK 187 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 V E+RNI + ++ GR+W G++AK+ GL+D +G + SL + + Sbjct: 188 AHVMEARNISEEDLEKIAGGRVWLGSQAKENGLVDELGTLNDCIDSLAKDLELKDFK 244 >gi|332300301|ref|YP_004442222.1| signal peptide peptidase SppA, 67K type [Porphyromonas asaccharolytica DSM 20707] gi|332177364|gb|AEE13054.1| signal peptide peptidase SppA, 67K type [Porphyromonas asaccharolytica DSM 20707] Length = 594 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 71/269 (26%), Positives = 122/269 (45%), Gaps = 16/269 (5%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERIS 61 L V+L+ VY + +V + G+I S L +RI + Sbjct: 289 LHFVSLSDVY-ATRGSGRKGGANVGVLFAEGEINVEVADSPFNTKKVVSDRLADRILEMG 347 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 DD AL+V ++SPGGS+Y E ++ A+ K KPV+ + + AAS GY +S ++ I Sbjct: 348 EDDDYDALVVRVNSPGGSSYISEQLWYAVHKASENKPVVISMGDYAASGGYYMSSGASYI 407 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 A +++ GSIG+ P +K+GV VK+ +P + + Q Sbjct: 408 FAEPSTITGSIGIFGVVPNATKLANKIGVHQDVVKTGQHADLGAPDRPWTEEERALFQQY 467 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 V+ Y F++ VSE RN+ + ++ GR+WTGA+A +GL+D +GG ++ + Sbjct: 468 VNRGYALFLKRVSEGRNMTTTQVDSIAQGRVWTGAQALSLGLVDELGGLQDAIAYAASQA 527 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISS 270 + + +L + S + Sbjct: 528 GY--DTYHVTYTKREVNVLQELFSSSTQA 554 Score = 82.0 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 99/270 (36%), Gaps = 29/270 (10%) Query: 8 IKTRYVMLSLVTLTVVYFS--WSSHVEDNSPHVARIAIRGQIED---------------- 49 I ++ L++ + ++ + + +I + I D Sbjct: 21 IFASLAVIVLISFIAALSANIANNTQQIKDGSILKIELA-HISDTYVSNPWSDLGLNKSD 79 Query: 50 -SQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 S++L +E I+ DD + ++++ PG + EA+ A++ K I Sbjct: 80 GSRDLPLSYVLEAIDEAKNDDRIKGIYLNVTDPGCGYASAEALRGALEDFKEDGKFIVSY 139 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 + + GY ++ ++ + + + G+ + K LDK+GV + K K+ Sbjct: 140 SDFYSLKGYYLASVADQLYVNKEGSIAFDGLAGGAVFFKDLLDKIGVEMMVFKVGTFKSA 199 Query: 164 PSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD--GRIWTGAEAK 219 P+ + ++ + + + + V SRN+ + L+D + Sbjct: 200 VEPYILNSMSEANRTQITSYLGDIWGRILSEVGASRNLDSVRLQSLADSMQSVRPTDSYL 259 Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 GLID Q++ ++L +L + Sbjct: 260 ANGLIDGALYQDQALETLCSLVGVDEKDDL 289 >gi|170726647|ref|YP_001760673.1| signal peptide peptidase SppA [Shewanella woodyi ATCC 51908] gi|169811994|gb|ACA86578.1| signal peptide peptidase SppA, 67K type [Shewanella woodyi ATCC 51908] Length = 613 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 67/269 (24%), Positives = 121/269 (44%), Gaps = 14/269 (5%) Query: 34 NSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 + V I +G I + E + + DD A+++ + SPGGSA+A E Sbjct: 323 TNDTVGIIVAKGTILNGNQPAGNIGGESTSELLRKARFDDQVKAVVLRVDSPGGSAFASE 382 Query: 85 AIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I + + +K KPV+ + AAS GY IS +++ I A T+L GSIG+ + Sbjct: 383 QIRQEVLALKTAGKPVVVSMGSYAASGGYWISASADYIYATPTTLTGSIGIFGMITTFED 442 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L +G+ V +S S + P ++Q V+ YH F+ LV+ R++ D Sbjct: 443 SLSSIGIHTDGVATSEWAG-ISVAKGLTPGIKDVIQRHVERGYHDFISLVANERDMSLDD 501 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFCD 262 ++ GR+W+G +A +GL+D +G ++ + +I + + F Sbjct: 502 VDSIAQGRVWSGRKALSLGLVDELGDLKQAVAKAAQMAELDDFDSEIIEQDLTPQEQFIQ 561 Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 S S+ L +++ + ++ L + W Sbjct: 562 EMFASASAYLPESMS--HSSVIEQLLSQW 588 >gi|325475502|gb|EGC78683.1| signal peptide peptidase SppA [Treponema denticola F0402] Length = 495 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 63/245 (25%), Positives = 111/245 (45%), Gaps = 12/245 (4%) Query: 34 NSPHVARIAIRGQIED-----------SQELIERIERISRDDSATALIVSLSSPGGSAYA 82 + + I I G I S ++++ + D + A++V ++S GG +A Sbjct: 207 SQNSIGVIHINGAISSTGTGRIDDSAVSYKIVDLFDIAQGDPTVKAIVVRVNSGGGEVFA 266 Query: 83 GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 E I RAI + K PV+ + +AAS Y IS +++ I A+ ++ GSIGVL P Sbjct: 267 SEEIRRAIDRAKASGLPVVVSMGSVAASGAYWISSSADYIFASPYTITGSIGVLATAPSF 326 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 K + K + S K S E +P+ ++ Q V Y F+ V+ RN+P Sbjct: 327 KEAVKKYLGITSDLVYSGQKPSYSVLEEPSPEEKEVRQMEVMHIYKTFIETVARGRNLPE 386 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 L+ GR+++G +A + L+D +G +E + L +K+ P + Sbjct: 387 KTVEELAGGRVYSGEQALNLKLVDALGSLDEAVKYAAELANISGQYSVKEIKKPLPFTEA 446 Query: 262 DLKNL 266 +K++ Sbjct: 447 LIKSI 451 >gi|282877202|ref|ZP_06286040.1| signal peptide peptidase SppA, 67K type [Prevotella buccalis ATCC 35310] gi|281300694|gb|EFA93025.1| signal peptide peptidase SppA, 67K type [Prevotella buccalis ATCC 35310] Length = 589 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 66/277 (23%), Positives = 127/277 (45%), Gaps = 17/277 (6%) Query: 30 HVEDNSPHVARIAIRGQIED---------------SQELIERIERISRDDSATALIVSLS 74 E VA G I D E+ + +E ++ DD A+++ ++ Sbjct: 294 KEETEGKQVAVYYAYGSIVDNPVTGSMFGAEHMIVGSEVCKDLEALAEDDDVKAVVLRIN 353 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 S GGSAYA E ++ ++++K +KPV+ + +MAAS GY + C +N IVA T+L GSIG+ Sbjct: 354 SGGGSAYASEQMWNQVEQLKKKKPVVVSMGDMAASGGYYMGCNANWIVAQPTTLTGSIGI 413 Query: 135 LFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 P + L KLG+ VK++ S +N + + + +D Y F + V Sbjct: 414 FAMIPDMSQLLTQKLGIKFDEVKTNKNSTFGSSARPLNAEEIGYLARYIDRGYALFRQRV 473 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 ++ R + ++ ++ G ++ G +A K+ L+D +GG ++ + L +D+ Sbjct: 474 ADGRKLSVNQVEAIAQGHVFVGRDALKIKLVDELGGLDKAVEKAAKLAKLDEFY-TQDYP 532 Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 ++ +S + L++ + + + Sbjct: 533 AKASWMDQLTGAMSGGNYLDEQLRATLDEYYEPFMLL 569 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 41/282 (14%), Positives = 96/282 (34%), Gaps = 33/282 (11%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYF----------SWSSHVEDNSPHVARIAIRGQIEDS 50 M+ K + V L + L VV F S + + + + + G + + Sbjct: 1 MKDFFKYVGATVVGLIVFGLIVVIFGTMSIVGLISSAQATQNVSKNSILVLNLSGSLAEQ 60 Query: 51 -------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 +++ I++ +D + + + + + I A+ Sbjct: 61 GSDNVWGMLTGNELGSAGLDDILSAIKKAKNNDRIKGIYIESGIFLANYASRQEIRNALL 120 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 K I + Y ++ ++ + ++ G+ Q +VK L K+G+ Sbjct: 121 DFKKSGKKIIAYGDNYTQGNYYLASVADKVFLNPQGMIDWHGIGAQPMFVKDLLKKVGIQ 180 Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + VK K+ + +++ + + Q +D + ++ VS+SR I DK +D Sbjct: 181 YQVVKVGKYKSATEMYIADKMSDPSREQTQAYIDGIWSDVLKAVSDSRKINVDKLNQYAD 240 Query: 210 GRIW--TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 I + L+D + +V + + + Sbjct: 241 SLITFSNPKDYVDAKLVDGLLYTNQVKDEVKKMFGLDKDDPV 282 >gi|87123710|ref|ZP_01079560.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp. RS9917] gi|86168279|gb|EAQ69536.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp. RS9917] Length = 272 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 65/256 (25%), Positives = 130/256 (50%), Gaps = 5/256 (1%) Query: 41 IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK- 97 IAI G I S + +++ + + + + AL++ + SPGG+ + I A+ +++++ Sbjct: 19 IAIEGAIGASTRRRVLKALREVEKRE-FPALLLRIDSPGGTVGDSQEIHAALLRLRDKGC 77 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 V+ ++AS G + AS +IV+ ++ GSIGV+ + + L+++G+ ++VKS Sbjct: 78 RVVASFGNISASGGVYVGVASEMIVSNPGTITGSIGVILRGNNLSKLLERVGIRFETVKS 137 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 K SP ++ + ++Q ++DSSY FV+ V++ R + D +DGR+++GA+ Sbjct: 138 GAYKDILSPDRALSAEERDLLQSLIDSSYEQFVQAVAQGRQLEPDVVRQFADGRVFSGAQ 197 Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 AK++GL+D +G +E + L + + P+ L + L + Sbjct: 198 AKELGLVDALGDEETARRKAAELAGLEVDSQPVTLGKPRKQLMGLLPGSGLLQQLGQLLE 257 Query: 278 LMKQTKVQGLWAVWNP 293 Q LW ++ P Sbjct: 258 SEVLLSHQPLW-LFRP 272 >gi|238919550|ref|YP_002933065.1| signal peptide peptidase SppA, 67K type, [Edwardsiella ictaluri 93-146] gi|238869119|gb|ACR68830.1| signal peptide peptidase SppA, 67K type, putative [Edwardsiella ictaluri 93-146] Length = 617 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 67/270 (24%), Positives = 122/270 (45%), Gaps = 14/270 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGS 79 + +A I G I D + +I + D + A+I+ ++SPGGS Sbjct: 318 KPKRTGNGQIAVIFASGPIIDGEATPGSVGGDTTAAQIRQARLDPAIRAIILRVNSPGGS 377 Query: 80 AYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I A+ + KPV+ + +AAS GY IS +N IVA+ ++L GSIG+ Sbjct: 378 VTASEEIRSALAAARDAGKPVVVSMGGLAASGGYWISTPANTIVASPSTLTGSIGIFGVI 437 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L LGV V +SP+ + + +MQ +++ Y F+ LV+ +R+ Sbjct: 438 NTFEKPLGLLGVYTDGVATSPLADT-ALTKALPQSVSDLMQLTIENGYQRFISLVATARH 496 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + ++ GR+W G +AK GL+D +G ++ L +++ + N Sbjct: 497 KTPAQIDNIAQGRVWLGVDAKANGLVDRLGDFDDAVSQAATLAGI-KQPQLQWY--VDNP 553 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 F ++ ++S ++ ++P Q + Sbjct: 554 SFSEMVFSQLTSSVQASLPQALQGMIPASL 583 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 51/331 (15%), Positives = 114/331 (34%), Gaps = 50/331 (15%) Query: 1 MEFVLKK-IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + F+ + + ++L L+ + + + V + + + G + D+ Sbjct: 19 LNFIREFILNLFLILLILIGVGIYLQFQDTPVNPTTKGALLVDLNGVVVDNPALNSKFGQ 78 Query: 52 -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91 +L++ + + D + T L++SL++ G+ + I +A+ Sbjct: 79 LGRELLGIRGAALQENSLFDLVDTLRQAKSDPNITGLVLSLNNFAGADQPSLQYIGKALS 138 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + + I V E A Y ++ ++ I + VG G+ Y K LDKL VS Sbjct: 139 EFRASGKPILAVGENYTQAQYFLASYADKIYLSPQGSVGLQGMATNNLYYKSLLDKLDVS 198 Query: 152 IKSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT----- 204 + K+ P +++P+A ++ + ++ +V+ +R++ ++ Sbjct: 199 THIFRVGTYKSAVEPLMRDQMSPQARSADSQWLNGMWSNYLTIVATNRHLTPEQVFPGAG 258 Query: 205 ---LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNPP 255 L A L+D + + E L A D I D+ Sbjct: 259 QMLKGLQATGGDMAQYAVLHRLVDGLASRSEAESILSRQFGWDARARDYRHISIYDYPLK 318 Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + +S P++ G Sbjct: 319 PKRTGNGQIAVIFASG-----PIIDGEATPG 344 >gi|119510440|ref|ZP_01629573.1| Peptidase S49, SppA [Nodularia spumigena CCY9414] gi|119464862|gb|EAW45766.1| Peptidase S49, SppA [Nodularia spumigena CCY9414] Length = 273 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 65/260 (25%), Positives = 127/260 (48%), Gaps = 5/260 (1%) Query: 36 PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 +ARI I G I S + ++E ++ + AL++ + SPGG+ + I+ A++++ Sbjct: 11 KQIARIEITGAIAGSTRKRVLEALKTVEE-KKFPALLLRIDSPGGTVGDSQEIYSALKRL 69 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + + ++ ++AS G I + I+A ++ GSIGV+ + ++ L+K+GVS K Sbjct: 70 RKKIKIVASFGNISASGGVYIGMGAEHIMANPGTITGSIGVILRGNNLERLLEKVGVSFK 129 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 +KS P K S ++ ++Q+++D SY FV ++E+R++ + +DGRI+ Sbjct: 130 VIKSGPYKDILSFDRQLTAPEETILQELIDISYQQFVHTIAEARSLEVETVKTFADGRIF 189 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLKNL-SISSL 271 TG +A ++G++D +G +E+ + D K L +SS Sbjct: 190 TGEQALELGVVDRLGTEEDARCWTAEMVGLDPDKAPCYTLEERKPLLSRVLPGSRQVSSG 249 Query: 272 LEDTIPLMKQTKVQGLWAVW 291 L I ++ +W Sbjct: 250 LGAGINWLEFEMSTSGLPLW 269 >gi|300112959|ref|YP_003759534.1| peptidase S49 [Nitrosococcus watsonii C-113] gi|299538896|gb|ADJ27213.1| peptidase S49 [Nitrosococcus watsonii C-113] Length = 325 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 62/248 (25%), Positives = 112/248 (45%), Gaps = 14/248 (5%) Query: 29 SHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 S +PH A + I G I +++ + + ++ ++ LI+ ++SPGGS Sbjct: 68 SAPGITAPHTALVNIEGIIGADSFANAENIKKGLKAAFENEHIAGLILHINSPGGSPVQA 127 Query: 84 EAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 I + +++ + P I + ++ AS GY I+ A++ I A + S+VGSIG L Sbjct: 128 SQINDQVHQLRKKHPDIPIHAVITDICASGGYYIAVAADQIYADKASIVGSIGALINSFG 187 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 ++KLG+ + + K PFS + Q +Q ++D+ F+++V ++R Sbjct: 188 FVEAMEKLGIERRLFTAGDYKGFLDPFSPMKEFEAQHIQKMLDNIQKQFIQVVKDNRGDR 247 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 L G +WTG +A +GLID +G V + + KI D+ P Sbjct: 248 LKNDSSLFTGLVWTGEQAIDLGLIDGLGNSSYVAREIIG------AEKIIDYTPKPKLLD 301 Query: 261 CDLKNLSI 268 + L Sbjct: 302 RFSRQLGA 309 >gi|68171775|ref|ZP_00545120.1| Peptidase S49, SppA [Ehrlichia chaffeensis str. Sapulpa] gi|88658399|ref|YP_507221.1| signal peptide peptidase SppA [Ehrlichia chaffeensis str. Arkansas] gi|67998800|gb|EAM85507.1| Peptidase S49, SppA [Ehrlichia chaffeensis str. Sapulpa] gi|88599856|gb|ABD45325.1| signal peptide peptidase SppA [Ehrlichia chaffeensis str. Arkansas] Length = 288 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 81/261 (31%), Positives = 157/261 (60%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA 66 ++ +++ L+ L ++ ++A++ I G+IE ++E+ +++I+ D+ Sbjct: 19 RVFAFFMIFVLLMLVNYIDISKISSFLDNEYIAKVNIEGKIETNEEMDALLKKIAEDNHV 78 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 T LI++++SPGGS E +++ I+ V KPV+ +++ AAS GY+ + A++ I+A T Sbjct: 79 TGLILNINSPGGSVTGSEILYQNIRNVSKNKPVVALLNDFAASGGYMTAIAADYIIARHT 138 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 ++ GSIGVL QY + P +K+G+S+KS+KSS +KAE SPF E+ + + ++ ++ +SY Sbjct: 139 TITGSIGVLMQYIGINPLAEKMGISLKSIKSSNLKAETSPFEELTEEKEESIRRIIKNSY 198 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 +FV +V++ R + D+ L +++G I+TG+EA +GL+D +GGQ+E ++ + Sbjct: 199 DYFVDIVADRRKMEKDQVLKIANGSIYTGSEALSIGLVDQIGGQDEAMNWFHSQNISTQK 258 Query: 247 RKIKDWNPPKNYWFCDLKNLS 267 K+ K+ +S Sbjct: 259 VKVLSKKKHKSIIENVSSFIS 279 >gi|284007469|emb|CBA72932.1| protease IV (signal peptide peptidase) [Arsenophonus nasoniae] Length = 626 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 72/259 (27%), Positives = 125/259 (48%), Gaps = 14/259 (5%) Query: 37 HVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 ++A I +G I D S+ + +I + + A+++ ++SPGGS A EAI Sbjct: 338 NIAVIIAQGAIIDGPQEPGMVGSETTVAQIRKARLNPDIKAIVLRVNSPGGSVTASEAIR 397 Query: 88 RAI-QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 + KP++ + MAAS GY IS +N I A+ T+L GSIG+ + LD Sbjct: 398 NELVAARDANKPIVVSMGGMAASGGYWISTPANYIFASPTTLTGSIGIFGVINTFEKSLD 457 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 +GV V ++P+ S +N + MMQ ++++ YH F++ V+++R+ + Sbjct: 458 TIGVYTDGVSTTPLAD-ISATKGINKQFSDMMQIIIENGYHTFLKYVAQARHKTPAEIDK 516 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 ++ GR+W G++A + GLID +G ++ L DW P+ L L Sbjct: 517 IAQGRVWVGSDALQNGLIDKLGDFDDAVNKAAELAKIT--APSLDWMQPERSLIDQLI-L 573 Query: 267 SISSLLEDTIPLMKQTKVQ 285 ++S E +P Q + Sbjct: 574 ELTSNAEAMMPDTLQLLLP 592 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 47/292 (16%), Positives = 101/292 (34%), Gaps = 40/292 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH--VARIAIRGQIEDSQ------- 51 + F+ + I + + + YF++ S + S + I ++G I D Sbjct: 19 LNFIRRFITSFICLFLIFIAASSYFAYKSEKKSTSQYHGALLIDLQGVIVDQVSIPNPLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I R + DD T +++ L + GS + I +A+ Sbjct: 79 KMSRELLGSSSNRMQENSLFDIVNIIRRATYDDKITGIVLQLDNLIGSDQPSLQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 + K I V + Y ++ +N I ++ VG G Y K LD L V Sbjct: 139 TEFKQAGKPIYAVGNGYNQSQYYLASFANNIYMSQQGNVGIYGFSTNKLYYKTLLDNLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK----- 203 + + K+ PF ++ +A + + + S + ++ ++++R Sbjct: 199 NSHIFRIGTYKSAVEPFIRDNMSAEAREADKVWIGSLWQHYLSTIAQNRQTTAGNIFPGA 258 Query: 204 ---TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 + + A K LID + + + L + ++ Sbjct: 259 DKLIEEMKSVNGDSAQYAIKQKLIDHIFTGAVMEKELSKKFGWNDKEQHFNY 310 >gi|257093133|ref|YP_003166774.1| peptidase S49 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045657|gb|ACV34845.1| peptidase S49 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 316 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 115/282 (40%), Gaps = 8/282 (2%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERIS 61 K V + L +V + H A I + G I +Q + + ++ Sbjct: 35 FFKLVVVSYLVAVLVMVVDWGGPEQRADGRHTAVIHLHGTIEASGEASAQNINDALQAAF 94 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCAS 118 D +I+ ++SPGGS + I+++ + P+ V ++ AS GY I+ A Sbjct: 95 GDKGTAGVILRVNSPGGSPVQAGIVHDEIRRLRTTHPQIPLYVVVEDLCASGGYYIAVAG 154 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I + S+VGSIGVL +DKLG+ + + + K PFS + K + Sbjct: 155 DKIFVDKASIVGSIGVLMDAFGFTGTMDKLGIERRLLTAGENKGFLDPFSPQDAKQKEHA 214 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 Q ++ + F+ +V R +T + G +WTG+++ K+GL D G V + + Sbjct: 215 QVLLREIHKQFIEVVRRGRGPRLKETPEMFSGLMWTGSQSVKLGLADGFGTVGSVARDVI 274 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 ++ + SLLE P ++ Sbjct: 275 KAERMVDFTIKENIAERFAKRLRADSTQGVGSLLEVIRPAVR 316 >gi|149920473|ref|ZP_01908941.1| SppA [Plesiocystis pacifica SIR-1] gi|149818654|gb|EDM78099.1| SppA [Plesiocystis pacifica SIR-1] Length = 683 Score = 130 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 75/283 (26%), Positives = 131/283 (46%), Gaps = 20/283 (7%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------ELIERIERISRDDSATAL 69 + + PHVA + G I D + +L+ ++RI+ DD+ A+ Sbjct: 360 FIGLAPPKRPTEPHVAIVYAVGNIIDGKGQGALGATSEIASGQLVPVLDRIAADDAVAAV 419 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 ++ + S GGSA A E I+ A++++K KPV+ + +AAS GY IS +N IVA ++ Sbjct: 420 VLRVDSGGGSALASEQIWHAVERLKANKPVVVSMAGVAASGGYYISAGANHIVAEPNTIT 479 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ + L + GV +VK SP + + ++ +Y F Sbjct: 480 GSIGVVGGKLAMGEALSRWGVETFTVKKGARANLWSPMDTWTEEERAAIYATMEETYEVF 539 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 + V+ R++ D ++ GR+WTGA+AK+ GL+D +GG E LG + Sbjct: 540 LSRVAAGRSMDRDGVHAIAQGRVWTGADAKERGLVDELGGIEVALAKAAELGEVEGEPGY 599 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDT-----IPLMKQTKVQGL 287 + + P + L + ++ + +P+ Q + L Sbjct: 600 EVY-PGEPTLKDLLGSFGGAAGMAQASAGTRLPMSAQLMLDEL 641 Score = 86.2 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 99/273 (36%), Gaps = 21/273 (7%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ-------------------ELIERIERISRDDSATA 68 S + + PH+ + ++G + + + L++ ++ ++ +D Sbjct: 92 SDGFDADEPHLRVLTLKGSVAEVEGVDPLAMVLGGGGSTLQTRALLDELDELAAEDEVRG 151 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 LI+ + + G E + + + K + I E +A Y + A + + A Sbjct: 152 LILRVGNLGMDMARAEELRAGLLEFKATERSIYCHAETLDNASYYLLSACDELSMAPVGT 211 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSY 186 V G + ++K LDKLGV + K P +P+ ++ ++ V+D ++ Sbjct: 212 VAIPGPIATPIHLKGLLDKLGVQPDFLHVGAFKGAAEPLTRDAPSPEMIETLEAVIDKAH 271 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 V ++ R ++ D ++T +AK+ GLID V E + Sbjct: 272 GTMVEGIASGRKRSPEEVSAWIDEALYTTEKAKQAGLIDRVDVWERYLADATDAAGTDAG 331 Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 + + L L+ I L Sbjct: 332 LETPLGWKKASVGAEASDMLDDPMALQRFIGLA 364 >gi|260549329|ref|ZP_05823549.1| periplasmic serine protease [Acinetobacter sp. RUH2624] gi|260407735|gb|EEX01208.1| periplasmic serine protease [Acinetobacter sp. RUH2624] Length = 365 Score = 130 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 60/298 (20%), Positives = 124/298 (41%), Gaps = 27/298 (9%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP---------HVARIAIRGQI-------ED 49 ++ + L+ + L + + H+A + I G I + Sbjct: 67 RRWGIFFKTLTFIYLLFIVVLMGKGCSTSKEGSAASSSSAHLAVVDIVGTIDASSNQSVN 126 Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEM 106 S++ + ++R ++ A+ ++++SPGGS + I++ I+ + K V + +M Sbjct: 127 SEDTNKALKRAFEASNSKAIALNINSPGGSPVQSDEIWQEIRYLKKEHPDKKVYAVIGDM 186 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 AS Y I+ A++ I+ +SLVGSIGV+ + KLG+ +++ + K S Sbjct: 187 GASGAYYIASAADEIIVNPSSLVGSIGVIMPNYGITGLAQKLGIEDRTLTAGTNKDILSM 246 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLID 225 +NP + +Q V+D+ + F+ V E R + G WTG +A ++G+ D Sbjct: 247 TKPINPVQREHIQSVLDNVHTHFINAVKEGRGKRLKSNDPAIFSGLFWTGEQAIQLGVAD 306 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 G + + L + D+ +N L + + + ++ + Sbjct: 307 RSGNITSLMREL-------KLDNKVDYTIERNPLQSILGRMGAEMGKGLSESVAQRLE 357 >gi|157962074|ref|YP_001502108.1| signal peptide peptidase SppA [Shewanella pealeana ATCC 700345] gi|157847074|gb|ABV87573.1| signal peptide peptidase SppA, 67K type [Shewanella pealeana ATCC 700345] Length = 613 Score = 130 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 66/269 (24%), Positives = 126/269 (46%), Gaps = 16/269 (5%) Query: 35 SPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + V I +G I E + + DDS A+++ + SPGGSA+A E Sbjct: 324 NDQVGIIVAKGNILNGSQPAGQIGGDSTSELLRKARFDDSIKAVVLRVDSPGGSAFASEQ 383 Query: 86 IFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I + + +K KPV+ + AAS GY IS +++ I A T+L GSIG+ + Sbjct: 384 IRQEVLALKAANKPVVVSMGSYAASGGYWISASADYIYATPTTLTGSIGIFGMITTFEDS 443 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L +GV V +S S ++P+ ++Q ++ Y+ F+ LV++ R++ D+ Sbjct: 444 LASIGVHTDGVGTSEWAG-FSVTKGLSPQIQAVIQRHIERGYYDFISLVAKERDMSLDQV 502 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPKNYWFCD 262 ++ GR+WTG +A ++GL+D +G ++ + I+ P+ + + Sbjct: 503 DSIAQGRVWTGRKALELGLVDGLGELQDAVTKAAEMASLDTFDTEVIERELSPQEQFIQE 562 Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 + + S L + + + ++ + + W Sbjct: 563 MFATASSHLPP---SVTQSSLLETILSQW 588 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 93/278 (33%), Gaps = 36/278 (12%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------- 51 L+K+ + ++ L +V S VE + + + G I D + Sbjct: 22 LRKLFLNLIFFGVIALIIVSLSTDDGVEVENGAALVLNLSGTIVDQKRQVDPIEAAMKSG 81 Query: 52 ------------ELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRKP 98 +++ I+ + D+ + L++ L G+ ++I AI K Sbjct: 82 NEADGSGEILLSDVLYVIDNAASDERISQLVLDLGMLRGTGISKLQSIGNAIDSFKATGK 141 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 + Y ++ ++ + V G+ Y K L+KL ++ + Sbjct: 142 TVVANGNWYGQNHYFLASFADKVYLNPQGSVEIEGLGRYRLYFKSALEKLKINAHVFRVG 201 Query: 159 PMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLS 208 K+ PF +++ +A + +++ + + V+ +R I + L Sbjct: 202 TFKSAVEPFIRDDMSDEAKEANLVLLNDLWRSYADTVAANRGINSNDLSLSADDYLAQLD 261 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + A + +D + EE S+ S Sbjct: 262 KADGKSADMAVNMKWVDGLKSAEEFRLSMVDAVGKSSD 299 >gi|75908676|ref|YP_322972.1| peptidase S49, protease IV [Anabaena variabilis ATCC 29413] gi|75702401|gb|ABA22077.1| Peptidase S49, protease IV [Anabaena variabilis ATCC 29413] Length = 609 Score = 130 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 62/266 (23%), Positives = 118/266 (44%), Gaps = 9/266 (3%) Query: 31 VEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAY 81 ++ +A + G I D +I +D++ A+++ ++SPGGSA Sbjct: 310 ARNSKNKIAVVYAEGDIVDGKGDDGQIGGDRFARIFNKIRQDENVKAVVLRINSPGGSAT 369 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 A E + R I+ + KPV+ + + AAS GY I+ SN I A ++ GSIGV Sbjct: 370 ASEVMQREIRLTRESKPVVVSMGDYAASGGYWIATDSNRIFAEPNTITGSIGVFGVLFNG 429 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + + G++ +VK++ + +P+ + + Q VD Y+ FV V++ R +P Sbjct: 430 QKLANDNGITWDAVKTARYADSQTVARPKSPQEIAIYQRSVDRIYNMFVNKVAQGRKLPT 489 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 K ++ GR+W+G AK++GL+D +GG + +++++ ++ Sbjct: 490 QKVAQIAQGRVWSGVTAKQIGLVDEIGGLNAAIEYAAKAAKLGKDWQLREYPRESSFEER 549 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287 + I + L Sbjct: 550 FFGGVVEEISTTLGIEKLDVKPNDPL 575 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 95/234 (40%), Gaps = 5/234 (2%) Query: 51 QELIERIERISRDDSATALIVSLS--SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + +I+ +E+ RD A+ + S + + I +A+++ + + Sbjct: 87 RNVIDSLEKAQRDKRIVAIYLDGSRGGNNLGFASLKEIRKALEEFRKSGKKVIAYGVSWN 146 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167 Y +S ++ I + G+ Q +V L K G+ ++ V++ K PF Sbjct: 147 EREYYLSSVADTIALNPLGGLEINGLSSQPMFVAGALQKYGIGVQVVRAGKFKGAVEPFV 206 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGAEAKKVGLID 225 ++++P+ + Q ++D + + V SR I K ++D + + EAK GL+D Sbjct: 207 LNKLSPENREQTQKLLDDVWGEWRTTVGNSRKINPQKLQAIADNQSLLEPTEAKTNGLVD 266 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 V ++V L L + Y ++L ++ ++ I ++ Sbjct: 267 QVAYNDQVVADLKKLTGSDKKDNTFTQISLRRYAQVPGQSLGVARNSKNKIAVV 320 >gi|297618683|ref|YP_003706788.1| signal peptide peptidase SppA, 36K type [Methanococcus voltae A3] gi|297377660|gb|ADI35815.1| signal peptide peptidase SppA, 36K type [Methanococcus voltae A3] Length = 367 Score = 130 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 64/281 (22%), Positives = 132/281 (46%), Gaps = 18/281 (6%) Query: 8 IKTRYVMLSLVTLTV---VYFSWSSHVEDNSPHVARIAIRGQIE--------------DS 50 + ++++ ++ + + + F ++ S ++A I G + D Sbjct: 56 LIYLFIVVVIIAVLLSSSLLFINLLIDDEESGNIALIDFSGTLYLSTPEDDLFSEYPPDV 115 Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + I+ ++ ++ +I+ ++SPGGS+ A + I++V +KPV+ + M ASA Sbjct: 116 YDYIDWLDEAEKNPDIKGVIIKINSPGGSSIASTKLAEKIEEVSQKKPVVAYIEAMGASA 175 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 Y + ++ IVA + +LVGSIGV + +DK+GV+ +K K SP+ + Sbjct: 176 AYGAAASTGYIVAEKEALVGSIGVRMDILHYYGLMDKIGVNSTVIKGGEYKDIGSPYRPM 235 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + +M+Q +V++SY FV ++ RN+ Y++ L+ G+++ G +A ++GL+D G Sbjct: 236 TEEEQEMLQKIVNNSYVDFVSQIARDRNMTYEEANELAQGKVYDGRDALQLGLVDENGDF 295 Query: 231 EEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSISS 270 ++ L IK ++ S + Sbjct: 296 DQAINVLAKRTNLSVDDINIKTYSKEDTRPGNLFGFDSNEA 336 >gi|251792410|ref|YP_003007136.1| signal peptide peptidase SppA, 67K type [Aggregatibacter aphrophilus NJ8700] gi|247533803|gb|ACS97049.1| signal peptide peptidase SppA, 67K type [Aggregatibacter aphrophilus NJ8700] Length = 628 Score = 130 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 115/236 (48%), Gaps = 11/236 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSL 73 + D +A + + G I D + + + + + D +++ + Sbjct: 314 LAALPDRMSGDTENKIAVVNVEGAIIDGESDEDNVGGDTIAKLLRQAYDDKKVKGVVLRV 373 Query: 74 SSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 +SPGGSA+A E I + + ++ KPV+ + MAAS GY IS ++ IVA + ++ GSI Sbjct: 374 NSPGGSAFASEVIRQELTHLQQAGKPVVVSMGGMAASGGYWISSTADYIVADKNTITGSI 433 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 G+ P + + K+GV+ VK+S + FS ++ ++Q ++ Y F+ Sbjct: 434 GIFAVLPTFEKTIKKIGVTADGVKTSDL-TLGLLFSPLSSPLNDVIQLEIEHGYDQFLTK 492 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 VSE R++ ++ ++ G++W G+EA + L+D +G + L ++ + K Sbjct: 493 VSEGRHLTKEQVDRIAQGQVWLGSEALEHKLVDELGTLDTALGKAIELVNEKRLEK 548 >gi|296313748|ref|ZP_06863689.1| signal peptide peptidase SppA [Neisseria polysaccharea ATCC 43768] gi|296839673|gb|EFH23611.1| signal peptide peptidase SppA [Neisseria polysaccharea ATCC 43768] Length = 328 Score = 130 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57 K I L LV L F N+PH A + + G+I + ++ ++++ Sbjct: 45 KNIWRAVSTLILVALLAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114 E ++ A A+++ +SPGGS F I+++K + P V +M AS Y I Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I A +S+VGSIGV+ ++K+GV + + K PFS P+ Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++ ++++ + F++ V R + + GR++TGA+A KVGL+D +G Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280 V Q + + D+ P ++ + + + + + ++ Sbjct: 285 VAQDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVSEALQSLQ 328 >gi|145297988|ref|YP_001140829.1| signal peptide peptidase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850760|gb|ABO89081.1| signal peptide peptidase [Aeromonas salmonicida subsp. salmonicida A449] Length = 614 Score = 130 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 70/278 (25%), Positives = 123/278 (44%), Gaps = 13/278 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSL 73 + + + ++ V I G I D L + + RDD A+++ + Sbjct: 311 LTAAPEQYPQNGKDEVGLIVASGAIMDGVQSAGTIGGDSLSDLLADARRDDKVKAVVLRV 370 Query: 74 SSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 SPGGSA+A E I + + + KPV+ + AAS GY IS ++ I A+ T+L GSI Sbjct: 371 DSPGGSAFAAEQIRAELLALKQAGKPVVISMGSYAASGGYWISADADKIFASPTTLTGSI 430 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GV + + L + G+ V ++ + Q +Q V+ +Y FV L Sbjct: 431 GVFGMFATIDKALSQYGIHTDGVGTTDY-VGVGLTRALPEHVGQAIQLSVEDTYQRFVGL 489 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS--IRKIK 250 VS+ R + + ++GR+WTG +AK +GL+D G QE+ ++ L + + I+ Sbjct: 490 VSKGRGLSPQEAEKAAEGRVWTGQDAKALGLVDEFGNQEDAIKAAATLANLKEWQVTPIE 549 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 ++ + L + S +L + + L Sbjct: 550 QEESARDKFLRQLFDSSAQALAPHLQSWLPAGFGKALV 587 Score = 85.8 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 83/207 (40%), Gaps = 11/207 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 +L+ I DD AL++ G S + + AI + K + + + Sbjct: 93 SDLLWAIRSAKDDDRIKALVIKPQGLQGTSLSKLQEVAGAIDEFKESGKPVIAMADYYNQ 152 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 YL++ ++ ++ ++ V G+ Y K L+KL V+ K K+ P+ Sbjct: 153 GQYLLAAHADHVLLNQSGAVLIEGLGVYQTYFKSALEKLNVTPHVFKVGTYKSFVEPYTR 212 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAK 219 E++P++ + Q +D + +V V+E R I + +L + A Sbjct: 213 DEMSPESKEANQRWLDQLWQSYVADVAEQREIEPEAVAPSKDRFLELLRKAGGNAASYAL 272 Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSI 246 GL+D + ++E+ Q++ + Sbjct: 273 DNGLVDQLATRDEMTQAVIKEVGEDED 299 >gi|304314958|ref|YP_003850105.1| protease [Methanothermobacter marburgensis str. Marburg] gi|302588417|gb|ADL58792.1| predicted protease [Methanothermobacter marburgensis str. Marburg] Length = 287 Score = 130 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 68/275 (24%), Positives = 135/275 (49%), Gaps = 17/275 (6%) Query: 14 MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI----------EDSQELIERIERISRD 63 ++ +++++ + S S + + VA I + G I ++ IE + D Sbjct: 11 LIVVLSISGLVMSISGFIGEAEGTVAIIPVHGAIAYDSAGFSDAVSPDDIKNLIEEANSD 70 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 S A+++ ++SPGG+ A E + AI+K + KPV++ + + S YL + AS+ IVA Sbjct: 71 PSVKAIVLDINSPGGTPVASEELMDAIKK--SEKPVVSWISDSGTSGAYLAASASDRIVA 128 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 + ++ VGSIGV+ + ++G++ ++K+ K + + + + QM+Q +V+ Sbjct: 129 SPSAWVGSIGVILDLTDLSEMYRQMGINKYAIKAGEYKDMGADYRMITDEERQMLQSMVN 188 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 Y +F+R V+ +RN+ L++GRI+TG +A K L+D GG++ L Sbjct: 189 EEYDYFIRTVAANRNLSVSYVRGLAEGRIFTGRQALKNRLVDYTGGRDYAVDVAAKLAGL 248 Query: 244 QSIRKIKDWNPPK-----NYWFCDLKNLSISSLLE 273 ++ + P + F L + ++ E Sbjct: 249 KNYDTVTLEPPGGFVKILSSMFSKLGSAGSANTTE 283 >gi|325133299|gb|EGC55965.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis M13399] Length = 328 Score = 130 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 131/290 (45%), Gaps = 21/290 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57 K I L LV L F N+PH A + + G+I + ++ ++++ Sbjct: 45 KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114 E ++ A A+++ +SPGGS F I+++K + P V +M AS Y I Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I A +S+VGSIGV+ ++K+GV + + K PFS P+ Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++ ++++ + F++ V R + + GR++TGA+A+KVGL+D +G Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADAQKVGLVDGLGNIYS 284 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280 V + + + D+ P ++ + + + + + ++ Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328 >gi|284053896|ref|ZP_06384106.1| signal peptide peptidase A [Arthrospira platensis str. Paraca] gi|291565705|dbj|BAI87977.1| protease IV [Arthrospira platensis NIES-39] Length = 273 Score = 130 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 69/260 (26%), Positives = 133/260 (51%), Gaps = 5/260 (1%) Query: 36 PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 +ARI I G I + ++E ++ + AL++ + SPGG+ + I+ A++ + Sbjct: 11 KQIARIEISGAIAGDTRKRVLEALKTVEE-RKFPALLLRIDSPGGTVGDSQEIYSALKSL 69 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + + ++ ++AS G I + I+A ++ GSIGV+ + ++ L+K+GVS K Sbjct: 70 RKKVKIVASFGNISASGGVYIGMGAEHIMANPGTITGSIGVILRGNNLERLLEKVGVSFK 129 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 +KS P K + E+ Q++Q+++D+SY FV V+ESRN+ + +DGRI+ Sbjct: 130 VIKSGPYKDILAFDRELTEPEQQILQELIDTSYQQFVSTVAESRNLEIEAVRSFADGRIF 189 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLK-NLSISSL 271 TG +A ++G+ID +G +E+ + + D + PK+ L NL+ ++ Sbjct: 190 TGEQALQLGVIDRLGSEEDARRWTAEMVNLDPDKTECCTLEKPKSLLNRVLSNNLAATNS 249 Query: 272 LEDTIPLMKQTKVQGLWAVW 291 + D ++ +W Sbjct: 250 ISDARNWVEFELGTSGLPLW 269 >gi|16125179|ref|NP_419743.1| signal peptide peptidase SppA [Caulobacter crescentus CB15] gi|221233913|ref|YP_002516349.1| signal peptide peptidase [Caulobacter crescentus NA1000] gi|13422197|gb|AAK22911.1| signal peptide peptidase SppA [Caulobacter crescentus CB15] gi|220963085|gb|ACL94441.1| signal peptide peptidase [Caulobacter crescentus NA1000] Length = 594 Score = 130 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 74/288 (25%), Positives = 115/288 (39%), Gaps = 18/288 (6%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQI----------------EDSQELIERIERI 60 L+ + P +A I G I S ++ + Sbjct: 277 LLDFDDYASRSKPTAVKSGPAIAVIGAEGAIITGTDASASPFGGDSNVYSDDVAQAFRAA 336 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASN 119 + D A++ +SSPGGS A E I A+Q K KPV+ + AAS GY IS ++ Sbjct: 337 TEDKDVKAIVFRVSSPGGSDTASEQILAALQAAKKAGKPVVVSMGTYAASGGYWISSQAD 396 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-PMKAEPSPFSEVNPKAVQMM 178 I+A ++L GSIGV + L + GV K + P+ Sbjct: 397 SIIAQPSTLTGSIGVYGGKFAIGEALARFGVDTKDLHVGADYSQAFGAGEGFTPEQRAKF 456 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 +D Y F+ V+E RN+P K ++ GR+WTG +AK++GL+D +GG E + Sbjct: 457 AGWMDRIYAGFITRVAEGRNLPPAKVREIAKGRVWTGEQAKQLGLVDELGGYYEAVEKAK 516 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 AL + +IK + + K L +S T+ Sbjct: 517 ALAKVKGDIRIKHMQGGASPFEAFEKFLGVSETSAKTMAAAAWVLGDP 564 Score = 81.2 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 9/234 (3%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAAS 109 +IE + R +DD A++V L G + A + + A + + +KP+ + S Sbjct: 74 SVIETLRRAEKDDKVKAILVRLPEGGVAPAAADELRLAFKHFREVGKKPIYAHSQGLYPS 133 Query: 110 AG----YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 Y++ A++ S ++G+ + + K F DK GV + + K + Sbjct: 134 GMVTSTYMLGAATSEFWMQPDSSFQAVGISSESMFFKRFFDKYGVKAEYEQRYEYKNAVN 193 Query: 166 P--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 P S+ P + + S Y + + R K + +G + EA+ GL Sbjct: 194 PYLHSDYTPAHRESTLSWMGSVYRTALTSAAVDRKQDPTKLMKTLEGGPYIAQEAQAKGL 253 Query: 224 IDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 ID VG ++ + D+ E I Sbjct: 254 IDKVGQVSDIQAFALEKAGKGAKLLDFDDYASRSKPTAVKSGPAIAVIGAEGAI 307 >gi|153801836|ref|ZP_01956422.1| protease IV [Vibrio cholerae MZO-3] gi|124122608|gb|EAY41351.1| protease IV [Vibrio cholerae MZO-3] Length = 556 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 106/239 (44%), Gaps = 11/239 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 + + ++ +A + G I D + + D + A Sbjct: 307 IGYYEYKTTIKPTTLTDANDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKA 366 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + SPGGSA+A E I I+ +K KPV+ + +AAS GY IS +++ IVA T+ Sbjct: 367 VVLRVDSPGGSAFASEVIRNEIEALKTAGKPVVVSMSSLAASGGYWISMSADKIVAQPTT 426 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIG+ + L LG+ V ++P + + + A +Q ++ Y Sbjct: 427 LTGSIGIFSVITTFEKGLSNLGIYTDGVGTTPF-SGQGLTTGLTQGAKDAIQLGIEHGYQ 485 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 F+ LV+E R + L+ GR+WT +A+ +GL+D +G ++ L Sbjct: 486 RFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQY 544 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 99/284 (34%), Gaps = 37/284 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQ-------- 51 + F+ + +LS+ + +Y + + A + + G I + Sbjct: 19 ITFIRLALTNLIFLLSIGIIYFIYVHADAPLPTMDKSSALVLNLSGPIVEQSTHINPIDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 +++E + D++ T L+++ P + I +AI + Sbjct: 79 FTGSVFGEELPRENVLFDIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ I A V G Y K L+KL V+ Sbjct: 139 KASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-------- 203 + K+ PF +++ A + + + +V V+ +R I Sbjct: 199 VFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSMEQF 258 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 L + A +KKVGL+D + +++V Q+L Sbjct: 259 VAQLKEVNGDLAALSKKVGLVDELATRQQVRQTLAETFGSDGKD 302 >gi|313127075|ref|YP_004037345.1| signal peptide peptidase a [Halogeometricum borinquense DSM 11551] gi|312293440|gb|ADQ67900.1| signal peptide peptidase A [Halogeometricum borinquense DSM 11551] Length = 330 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 72/279 (25%), Positives = 128/279 (45%), Gaps = 20/279 (7%) Query: 2 EFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-------------- 47 E V + V+ +++ TV+ +S + VA IA+ G I Sbjct: 30 EDVTSLLGILLVVATVLGGTVIGGRIASSRYSDYD-VAEIAVEGPISRDGGSGRLPTRPG 88 Query: 48 -EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 S +++E+I+ + D + L+V L++PGG+ + I RA+ + P I + Sbjct: 89 GASSDDVVEQIQTAADDGAVDGLLVRLNTPGGAVLPSDDIRRAVAEF--DGPTIAYATDT 146 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 AS GY I+ + I A + S+VGSIGV+ V D+LGVS + + K + Sbjct: 147 CASGGYWIASGCDEIWAHDVSIVGSIGVIGSSVNVHELADRLGVSYERFAAGKYKDAGTA 206 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 E + + +Q +VD Y FV V+E R + D ++ R++ G+ A ++GL+D Sbjct: 207 LKEPSADEREYLQGLVDDYYDDFVERVAEGREMDPDAIRD-TEARVYLGSRAHELGLVDE 265 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 +G +++V L A D ++++ P +N Sbjct: 266 LGTRDDVLDRLAARL-DVESVSVREFTPSENLVSRLRGG 303 >gi|138896331|ref|YP_001126784.1| Signal peptide peptidase [Geobacillus thermodenitrificans NG80-2] gi|134267844|gb|ABO68039.1| Signal peptide peptidase [Geobacillus thermodenitrificans NG80-2] Length = 341 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 67/280 (23%), Positives = 127/280 (45%), Gaps = 18/280 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSS 75 D + + + G IED+ Q ++ I+++ DDS A+++ ++S Sbjct: 60 EDGDPLKKIVVLEVNGVIEDTGEAETFFSSSFYNHQAFLKMIKQVKEDDSVKAIVLRINS 119 Query: 76 PGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 PGG + + K+K P+ + MAAS GY I+ A + + A+ ++ GSIG Sbjct: 120 PGGGVVESAEVHNQLLKLKKETKKPIYVSMGAMAASGGYYIATAGDKLFASPETITGSIG 179 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V+ Q + K GV + ++KS P K +P ++ +++Q +++ SY FV ++ Sbjct: 180 VIMQSINYEGLAKKYGVELVTIKSGPYKDIMNPARKMTDAEQEILQRLINQSYEGFVDVI 239 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW- 252 E R + + L+DGRI+ G +AK + LID G ++ +L + +K Sbjct: 240 VEGRKLSEEAVRKLADGRIYNGRQAKALQLIDEFGYLDDTIAALKKEHRLSGAQVVKYVS 299 Query: 253 -NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 P + + N + + I L+ + L ++ Sbjct: 300 DTPWSSLFGVISNNAKPETEASELIRLLSRPSSPRLMYLF 339 >gi|319943489|ref|ZP_08017771.1| signal peptide peptidase SppA [Lautropia mirabilis ATCC 51599] gi|319743304|gb|EFV95709.1| signal peptide peptidase SppA [Lautropia mirabilis ATCC 51599] Length = 329 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 58/274 (21%), Positives = 112/274 (40%), Gaps = 11/274 (4%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------SQELIE 55 + + + V+ + + +VA I I G I + + + Sbjct: 39 IFQWLAFLAVLAFGIQRCTSVAQVDEDQRRPASYVASINIEGVIVGGSGEEGASADRINK 98 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAGY 112 + R D A +++ ++SPGGS I + +++ KP+ + E+ AS GY Sbjct: 99 ALRRAFSDPRAVGVVLRINSPGGSPVQSGMIVDEMRRQRRLHPEKPLHAVIEEVGASGGY 158 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 I+ A++ I + S+VGSIGVL Y V+ L LG+ ++ + KA P + ++ Sbjct: 159 YIAAAADNIYVDKASIVGSIGVLLSYYGVQDTLKMLGIERRTQTAGKNKAFLDPTAPMSA 218 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 + Q ++D + F+ +V + R +T G WTG + ++GL D +G + Sbjct: 219 EQKAHAQAMLDEVHRQFIDVVKQGRGQRLKETPETFSGLFWTGERSIQLGLADGLGSVDS 278 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 V + + + W + + Sbjct: 279 VARDVLNTENVVDFSEYSRWQMLARQFGAEAFGG 312 >gi|254673921|emb|CBA09705.1| signal peptide peptidase SppA, 36K type [Neisseria meningitidis alpha275] Length = 328 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57 K I L LV L F N+PH A + + G+I + ++ ++++ Sbjct: 45 KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114 E ++ A A+++ +SPGGS F I+++K + P V +M AS Y I Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I A +S+VGSIGV+ ++K+GV + + K PFS P+ Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++ ++++ + F++ V R + + GR++TGA+A KVGL+D +G Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280 V + + + D+ P ++ + + + + + ++ Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328 >gi|257887182|ref|ZP_05666835.1| protease/peptidase [Enterococcus faecium 1,141,733] gi|257823236|gb|EEV50168.1| protease/peptidase [Enterococcus faecium 1,141,733] Length = 341 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 66/276 (23%), Positives = 130/276 (47%), Gaps = 21/276 (7%) Query: 30 HVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSP 76 D++ + ++ + G I + +E+++ + D + + + ++SP Sbjct: 53 EEGDSTQKIVKLTVDGTIAAGGSSGLFASEGYNHENFMEQLKAVEEDPTVKGIFLEVNSP 112 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG Y I + + ++ P+ + MAAS GY IS ++ I A E ++ GSIGV Sbjct: 113 GGGVYESAEIAKKLDTIRKEHDIPMYVSMKNMAASGGYYISAQADKIFATEETVTGSIGV 172 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + L+KLGV +VKS +K S + ++Q +DS+Y FVR+VS Sbjct: 173 IMSGLNYSGLLEKLGVEDTTVKSGALKDMGSGTRPETKEEEAVLQAYIDSAYQRFVRIVS 232 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 E RN + ++DGRI+ G +AK+VGL+D +G E+ Q++ + ++ +++ Sbjct: 233 EGRNKSEEAVKKIADGRIYDGVQAKEVGLVDELGFPEDALQAMRKEQKLEDA-ELVEYSS 291 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 P + + ++ +K ++ + ++ Sbjct: 292 PSSGFASTWLGSKLA-----EFQGLKSSETSQILSI 322 >gi|90420561|ref|ZP_01228468.1| putative peptidase, S49 family [Aurantimonas manganoxydans SI85-9A1] gi|90335289|gb|EAS49042.1| putative peptidase, S49 family [Aurantimonas manganoxydans SI85-9A1] Length = 325 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 153/278 (55%), Gaps = 11/278 (3%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + + + +AR++I G I Q+L++ ++R+ +D+ A+++ + SPGG+ GE+I Sbjct: 40 SADRMATSKDQIARVSIEGMILKDQKLLDLLDRLKDEDAVKAVVLRIDSPGGTTVGGESI 99 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 + A++ + KPV EV +AASAGY+I+ ++ IVA TS+VGSIGV+FQY LD Sbjct: 100 YEAVRAIAEVKPVAAEVGTLAASAGYMIASGADHIVARRTSIVGSIGVIFQYVDASQLLD 159 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 +GV I ++KS+P+KAEPSPF+ A +M+ +V +Y WFV LV+E R++ + Sbjct: 160 TVGVQINAIKSAPLKAEPSPFAPAPEAAKEMINRLVMDTYEWFVALVAERRDMSMAEAKA 219 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 L+DG I++G + K L+D +GG+ EV + I D P + + + Sbjct: 220 LADGSIFSGQQGLKNRLVDALGGENEVRRWFEEDRGIARDLVIVDREPKDDGFDFSMFAG 279 Query: 267 SIS-----------SLLEDTIPLMKQTKVQGLWAVWNP 293 + + S L K + GL ++W P Sbjct: 280 ARAAIYGVFGLDPRSGSLTAAVLRKAGHLDGLVSLWQP 317 >gi|56417009|ref|YP_154083.1| protease IV [Anaplasma marginale str. St. Maries] gi|222475377|ref|YP_002563794.1| protease IV (sppA) [Anaplasma marginale str. Florida] gi|56388241|gb|AAV86828.1| protease IV [Anaplasma marginale str. St. Maries] gi|222419515|gb|ACM49538.1| protease IV (sppA) [Anaplasma marginale str. Florida] Length = 293 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 81/236 (34%), Positives = 137/236 (58%) Query: 36 PHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95 +VAR+ I G+I S+ + R++ DS AL++ + SPGG+ EA+++ I+++ Sbjct: 52 DYVARVRISGEIGRSRAREAMLARLAESDSVKALVLRIDSPGGTVGDSEALYQQIREIAL 111 Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 +KPV+ + +AAS GY+ + A++ +VA ++ GSIGV+ QY V KLG+++KS+ Sbjct: 112 KKPVVAVLGNVAASGGYMAAIAADHVVARHGTITGSIGVVSQYIGVAEAAGKLGIALKSI 171 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215 K++P+K+ SP E++P+ ++Q VVD + +FV LV+E R DK +SDGRI+TG Sbjct: 172 KTAPLKSNMSPLEELSPEGESIIQGVVDDFHVFFVGLVAERRGFTPDKVSAVSDGRIYTG 231 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 A+A + GLID +GG++E + L + + +I L Sbjct: 232 AQALQAGLIDAIGGEKEALEWLKTQRDVDVRVVKDVDYQRIDSGLPAFFSSAIQYL 287 >gi|90020544|ref|YP_526371.1| translation elongation factor G [Saccharophagus degradans 2-40] gi|89950144|gb|ABD80159.1| signal peptide peptidase SppA, 67K type [Saccharophagus degradans 2-40] Length = 610 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 122/245 (49%), Gaps = 11/245 (4%) Query: 36 PHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 ++ I G I D + + + +D+S AL++ + S GGSA+A E I Sbjct: 313 DNIGLIVASGTIYDGRHPEGTIGGDSMADLLREAQKDNSLKALVIRVDSGGGSAFASEVI 372 Query: 87 FRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + I +K + I + +AAS GY I+ A++ I A +L GSIGV YP + L Sbjct: 373 RQEISNLKAKGIPIYISMGSLAASGGYWIATAADEIWATPATLTGSIGVWGLYPNLTDSL 432 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 D LG+ + ++ + ++ A +++Q VD+ Y F+ +V+++R I ++ Sbjct: 433 DALGIHTDGIGTTELADVFRTDRPLSNAAEKVLQSGVDNIYSRFLSIVADARGISVEQVN 492 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 ++ GR+W+G AK++GL+D +GG +V ++ ++K P + L+ Sbjct: 493 EIAQGRVWSGTTAKELGLVDELGGLNDVIKAAAERQQLSD-YRVKLIAQPLSAKEQFLRA 551 Query: 266 LSISS 270 L+ ++ Sbjct: 552 LTQNA 556 Score = 73.9 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 72/208 (34%), Gaps = 11/208 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 +LI I+R D +AL+++L+ G + AI + K + + + Sbjct: 82 SDLITAIDRAKTDSRISALVLNLNHLTGGGVSKLTEVGDAILRFKEGGKEVVAFGDNLSQ 141 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y ++ ++ I + V G Y DKL + + K PF Sbjct: 142 QQYYLATYADHIYLNDLGAVFVTGYGIYRNYWAEAADKLKLKFHVFRVGDYKDAIEPFVR 201 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-----WTGAE---AK 219 + ++ + + ++ + + V R +P ++G A+ Sbjct: 202 NSMSDASREHNGRWLNELWGLYTSQVEAQRELPVGAVNEYITSLPKALPNYSGTAAEFAR 261 Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIR 247 GL+D V + ++ + A + + Sbjct: 262 DAGLVDDVVSRVKLREIFIAKYGEGKEK 289 >gi|294789451|ref|ZP_06754688.1| signal peptide peptidase SppA, 36K type [Simonsiella muelleri ATCC 29453] gi|294482664|gb|EFG30354.1| signal peptide peptidase SppA, 36K type [Simonsiella muelleri ATCC 29453] Length = 335 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 78/306 (25%), Positives = 136/306 (44%), Gaps = 35/306 (11%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDN--------SPHVARIAIRGQIEDSQEL---- 53 + + + + ++ + S +N H A I + G I ++++ Sbjct: 45 RLWRNIWRGVGVLMFVSIMASAMKGSPENRQHQIATHKEHTAVINLTGVIGGNEDVNHVE 104 Query: 54 --IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN---RKPVITEVHEMAA 108 + +E ++ A A+I+ +SPGGS F+ + ++KN KPV + +M A Sbjct: 105 ILRDGLEEAFKNKHAKAIIIHANSPGGSPVVSNVAFQEVMRLKNMEKTKPVYVVIGDMCA 164 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 S Y I+ A++ I A +SLVGSIGV+ +DKLGV + + K PFS Sbjct: 165 SGCYYIASAADKIYADPSSLVGSIGVIGSSFDATGLMDKLGVKRRQRIAGNNKGMGDPFS 224 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLIDV 226 P+ V + Q +++ + F++ V R + L GR++TG E+K VGLID Sbjct: 225 PETPEQVAIWQQMLNQIHAEFIKAVKLGRGNKLKEQQNPDLFSGRVYTGLESKNVGLIDE 284 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 G V + + K+ D+ P +N ++SL+ + TK++ Sbjct: 285 FGNVYSVARDVVK------APKLVDYTPEQN---------DLASLISRGLGAKMNTKLES 329 Query: 287 -LWAVW 291 L +VW Sbjct: 330 WLNSVW 335 >gi|254995186|ref|ZP_05277376.1| protease IV (sppA) [Anaplasma marginale str. Mississippi] gi|255003361|ref|ZP_05278325.1| protease IV (sppA) [Anaplasma marginale str. Puerto Rico] gi|255004484|ref|ZP_05279285.1| protease IV (sppA) [Anaplasma marginale str. Virginia] Length = 291 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 81/236 (34%), Positives = 137/236 (58%) Query: 36 PHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95 +VAR+ I G+I S+ + R++ DS AL++ + SPGG+ EA+++ I+++ Sbjct: 50 DYVARVRISGEIGRSRAREAMLARLAESDSVKALVLRIDSPGGTVGDSEALYQQIREIAL 109 Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 +KPV+ + +AAS GY+ + A++ +VA ++ GSIGV+ QY V KLG+++KS+ Sbjct: 110 KKPVVAVLGNVAASGGYMAAIAADHVVARHGTITGSIGVVSQYIGVAEAAGKLGIALKSI 169 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215 K++P+K+ SP E++P+ ++Q VVD + +FV LV+E R DK +SDGRI+TG Sbjct: 170 KTAPLKSNMSPLEELSPEGESIIQGVVDDFHVFFVGLVAERRGFTPDKVSAVSDGRIYTG 229 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 A+A + GLID +GG++E + L + + +I L Sbjct: 230 AQALQAGLIDAIGGEKEALEWLKTQRDVDVRVVKDVDYQRIDSGLPAFFSSAIQYL 285 >gi|308390209|gb|ADO32529.1| putative protease [Neisseria meningitidis alpha710] Length = 328 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57 K I L LV L F N+PH A + + G+I + ++ ++++ Sbjct: 45 KNIWRAVSTLILVALIAGIFRKDEAALQLTGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114 E ++ A A+++ +SPGGS F I+++K + P V +M AS Y I Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I A +S+VGSIGV+ ++K+GV + + K PFS P+ Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++ ++++ + F++ V R + + GR++TGA+A KVGL+D +G Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGSRLKFQQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280 V Q + + D+ P ++ + + + + + ++ Sbjct: 285 VAQDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328 >gi|163311059|pdb|3BEZ|A Chain A, Crystal Structure Of Escherichia Coli Signal Peptide Peptidase (Sppa), Semet Crystals gi|163311060|pdb|3BEZ|B Chain B, Crystal Structure Of Escherichia Coli Signal Peptide Peptidase (Sppa), Semet Crystals gi|163311061|pdb|3BEZ|C Chain C, Crystal Structure Of Escherichia Coli Signal Peptide Peptidase (Sppa), Semet Crystals gi|163311062|pdb|3BEZ|D Chain D, Crystal Structure Of Escherichia Coli Signal Peptide Peptidase (Sppa), Semet Crystals Length = 593 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 69/271 (25%), Positives = 117/271 (43%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 294 KTPADTGDSIGVVFANGAIXDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 353 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ AAS GY IS +N IVA ++L GSIG+ Sbjct: 354 VTASEVIRAELAAARAAGKPVVVSXGGXAASGGYWISTPANYIVANPSTLTGSIGIFGVI 413 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A Q +++ Y F+ LV+++R+ Sbjct: 414 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQLXXQLSIENGYKRFITLVADARH 472 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 473 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 531 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + N S S + +P Q + A Sbjct: 532 FDKVXDNXSGS--VRAXLPDAFQAXLPAPLA 560 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 81/208 (38%), Gaps = 11/208 (5%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASA 110 +++ I + D + T ++ L + G + I +A+++ ++ + V E + Sbjct: 74 DIVNTIRQAKDDRNITGIVXDLKNFAGGDQPSXQYIGKALKEFRDSGKPVYAVGENYSQG 133 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168 Y ++ +N I + +V G Y K LDKL VS + K+ PF Sbjct: 134 QYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRD 193 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKK 220 + +P A + + + ++ V+ +R IP ++ L+ T A + Sbjct: 194 DXSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALE 253 Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+D + E+ ++L K Sbjct: 254 NKLVDALASSAEIEKALTKEFGWSKTDK 281 >gi|116072773|ref|ZP_01470039.1| Peptidase S49, SppA [Synechococcus sp. BL107] gi|116064660|gb|EAU70420.1| Peptidase S49, SppA [Synechococcus sp. BL107] Length = 270 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 66/259 (25%), Positives = 127/259 (49%), Gaps = 6/259 (2%) Query: 39 ARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 ARI + G I + Q +++ + + R + AL++ + SPGG+ + I A+ +++ Sbjct: 14 ARIVVEGPINGATRQRVLKALLEVKRRE-FPALLLRIDSPGGTVGDSQEIHAALLRLREN 72 Query: 97 K-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 V+ ++AS G I + IV+ ++ GSIGV+ + + +++G+ +V Sbjct: 73 GCRVVASFGNISASGGVYIGVGAEKIVSNPGTITGSIGVILRGNDLSRVFERIGIRFDTV 132 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215 KS K SP +NP+ ++QD++DSSY FV +V++ RN+ + +DGR+++G Sbjct: 133 KSGKFKDILSPDRALNPEERALLQDLIDSSYSQFVGVVAKGRNLTEETVKTFADGRVFSG 192 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSISSLLED 274 +A +GL+D +G ++ + L + P+ L I S L+ Sbjct: 193 EQALSLGLVDELGDEDHALRLAAQLADLDQDDIRPVTLGRPRRKVSNLLPGSQIVSQLQK 252 Query: 275 TIPLMKQTKVQGLWAVWNP 293 + + Q LW ++ P Sbjct: 253 WLTMELMGSGQVLW-LYRP 270 >gi|218767314|ref|YP_002341826.1| putative protease [Neisseria meningitidis Z2491] gi|121051322|emb|CAM07607.1| putative protease [Neisseria meningitidis Z2491] gi|319409577|emb|CBY89869.1| putative peptidase [Neisseria meningitidis WUE 2594] gi|325129241|gb|EGC52080.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis OX99.30304] Length = 328 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57 K I L LV L F N+PH A + + G+I + ++ ++++ Sbjct: 45 KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114 E ++ A A+++ +SPGGS F I+++K + P V +M AS Y I Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I A +S+VGSIGV+ ++K+GV + + K PFS P+ Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++ ++++ + F++ V R + + GR++TGA+A KVGL+D +G Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280 V + + + D+ P ++ + + + + + ++ Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328 >gi|325959637|ref|YP_004291103.1| signal peptide peptidase SppA, 36K type [Methanobacterium sp. AL-21] gi|325331069|gb|ADZ10131.1| signal peptide peptidase SppA, 36K type [Methanobacterium sp. AL-21] Length = 312 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 66/280 (23%), Positives = 141/280 (50%), Gaps = 15/280 (5%) Query: 11 RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI------EDSQELI------ERIE 58 + L + T++++ S + N VA I ++G+I + ++ + + Sbjct: 18 LVIALLVATVSLLGGSNFLNSAPNGDTVAVIPLQGEIGYGSSGVSGETIVTPENVKDALN 77 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 + D + +++++ ++SPGGS A E I AI + ++KPV+ + + AS YL + ++ Sbjct: 78 QAESDGTVSSILIKINSPGGSPVASEEIMNAINE--SKKPVVVWIGDTGASGAYLAASSA 135 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I+A+ +S+VGSIGV+ + + + G++ S+K+ K S + + M+ Sbjct: 136 DDIIASPSSMVGSIGVIMGLTDLSKYYENNGINKYSIKAGEYKDMGSDYRNLTTNETNML 195 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 Q +V+ Y F+ +V+ +RN+ + T +++G+I+TG +AK + L++ GG+++ + Sbjct: 196 QGMVNEDYAHFIDIVAVNRNLTVNYTQSIAEGKIYTGTQAKNLKLVNDTGGEKQALDAAA 255 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278 LG D NP + L ++S + + Sbjct: 256 KLGGITGSYNTIDINP-SSGLLDILNSMSSRIAYSIGLGI 294 >gi|153004053|ref|YP_001378378.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter sp. Fw109-5] gi|152027626|gb|ABS25394.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter sp. Fw109-5] Length = 831 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 3/246 (1%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 I ++ + ++ R + D + A+++ + SPGG A + I+R +Q+ + RKPVI + + Sbjct: 565 AIAGAETISAQLRRAADDSAVKAIVLRVDSPGGDGVASDRIWREVQRARRRKPVIASMGD 624 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 +AAS GYL + ++ I+A ++L GSIGV P + L KLGV + S Sbjct: 625 LAASGGYLAAVGADEILAEPSTLTGSIGVFALKPDLSGLLSKLGVGRDATARGENAQLTS 684 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 ++ +D Y FV V+E R + ++ GR+WTG +A++ L+D Sbjct: 685 VAKPWAGPERAAVEREIDRFYAHFVARVAEGRKLDPAVVETVAAGRVWTGRQAQERHLVD 744 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK-V 284 +G E+ Q + + + L PL++ V Sbjct: 745 RLGSLEDALQLARERAGLRPRDVV--LVRTAKGGEDGQDPFTAGILGARGDPLVRALGAV 802 Query: 285 QGLWAV 290 L A+ Sbjct: 803 PELRAL 808 Score = 72.3 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 48/192 (25%), Positives = 89/192 (46%), Gaps = 3/192 (1%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 L+ R+ D A+ V + G A E + A+ +++ RKPV+ + + Y Sbjct: 326 LLRRLGEARDDPEVAAIAVRIEGLGLGAGRAEELRGALARIRERKPVLAYLAG-GGTTEY 384 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FSEV 170 I+ A+ + A S + G+ +VK L +LGV+ + VK K P P S+ Sbjct: 385 WIASAATALAAQPGSTLFVNGLSTSTLFVKDTLARLGVAFEVVKRGAYKTAPEPLVRSDA 444 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 +P+A ++ V+D Y V V+ +R +P ++ L D ++ +A++ GL+D V Sbjct: 445 SPEAREVTASVLDDLYARIVADVAAARRLPEERVRALVDRGLFGAEDAQREGLLDAVLWP 504 Query: 231 EEVWQSLYALGV 242 +E+ + Sbjct: 505 DELEGWARRVTG 516 >gi|90410825|ref|ZP_01218840.1| putative protease IV [Photobacterium profundum 3TCK] gi|90328456|gb|EAS44754.1| putative protease IV [Photobacterium profundum 3TCK] Length = 617 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 67/271 (24%), Positives = 124/271 (45%), Gaps = 18/271 (6%) Query: 34 NSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 + +A + G I D + DD A+I+ + SPGGSA+A E Sbjct: 322 SDNQIAVVVASGAIIDGTQRQGTVGGDSTAALLRDARLDDDIKAVILRVDSPGGSAFASE 381 Query: 85 AIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I + + + KPV+ + +AAS GY IS +++ I+A T++ GSIG+ + Sbjct: 382 IIRNEVDALKQAGKPVVVSMSSVAASGGYWISASADRIIAQPTTITGSIGIFAILTTFEK 441 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L+K+GV V ++P + E+ Q+ Q V+ Y F+ LVS+ RN+ ++ Sbjct: 442 GLEKMGVYSDGVGTTPF-SGVGVTRELPEGVGQVFQLGVEHGYKRFIGLVSQYRNMSLEQ 500 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN------ 257 ++ GR+WTG +A ++GL+D +G ++ + L ++ P + Sbjct: 501 ADKIAQGRVWTGQDAMELGLVDQLGDFDDAVAAAVELAKL-ETYELNWMEEPLSTAEKFL 559 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 F + +++++ +P Q Q + Sbjct: 560 QQFSSEVSTKVATMVLGQLPSALQPVTQQVV 590 Score = 95.4 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 45/327 (13%), Positives = 109/327 (33%), Gaps = 39/327 (11%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + F + I + ++ + + V + E + + G I + + Sbjct: 19 ISFTRQLILNLFFLIIIGAIFVAFNYGEDTPEQPDKAALILDLSGPIVEQRRYINPIDSI 78 Query: 52 ----------------ELIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVK 94 ++ E I + S D+ L+++L S I +AI + K Sbjct: 79 ASNALGQPPAQENILFDITETIRKASTDNKIEGLVLNLKGMSETSLTKLRYIAKAIAEFK 138 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + + + Y ++ ++ + + V G Y K L+KL V+ Sbjct: 139 AAGKPVYAYGDNFGQSQYYLASYADKVFMSPDGGVMLTGYGSYSLYYKSLLEKLNVNTHV 198 Query: 155 VKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP--------YDKT 204 + K+ P+ +++ A + ++ + F V+ +R+I D Sbjct: 199 FRVGTYKSFVEPYTRDDMSAPAREANTVWLNQLWGAFTTDVANNRHIDAATLTPNIDDFV 258 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI---RKIKDWNPPKNYWFC 261 L + K+GL+D + + ++ + +I + Sbjct: 259 QELKAVDGDFAKLSLKMGLVDELISRPQLRNKMIEEFGSDGEHSFNQISYYEYQPTIINT 318 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 DL + + +++ + ++ T+ QG Sbjct: 319 DLPSDNQIAVVVASGAIIDGTQRQGTV 345 >gi|257126290|ref|YP_003164404.1| signal peptide peptidase SppA, 36K type [Leptotrichia buccalis C-1013-b] gi|257050229|gb|ACV39413.1| signal peptide peptidase SppA, 36K type [Leptotrichia buccalis C-1013-b] Length = 549 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 61/281 (21%), Positives = 124/281 (44%), Gaps = 11/281 (3%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQI--------EDSQELIERIERISRDDSATAL 69 V++ E +A I + G I + E++E + + L Sbjct: 265 VSIEDYIVMTKDKKEKAKDTIAVINLEGVIDMKNPNKNITYDNVCEKLEELKEIKNLKGL 324 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 ++ ++SPGGSA E I++ ++K+ P+ + ++ AS GY I+ + A +L Sbjct: 325 VLRINSPGGSALVSEKIYKKLKKLT--VPIYVSMGDLCASGGYYIATTGKKLFANNFTLT 382 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ YP V + KL V+++ +PF E+ + + + ++ Y F Sbjct: 383 GSIGVVMMYPEVVGTMKKLDVNLEGFGKGAGFDMLNPFEELGEDSKEKLIHNMNEVYGEF 442 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR-K 248 V +R + ++ ++ GR+W G+EAK + L+D +G E+ +++ + + Sbjct: 443 KEHVMVARGMNDEELEKIAQGRVWLGSEAKNINLVDEIGTLEDCIKAMANDLKLDKYKVQ 502 Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 I + D+K +S + + + ++ Q L+ Sbjct: 503 IVELTQTLKETLSDIKMPFVSEEIREKVEFLQGNINQVLYY 543 Score = 73.1 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 107/281 (38%), Gaps = 25/281 (8%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWS-------------------SHVEDNSPHVARI 41 M F+LK + +ML L + + F V+ VA Sbjct: 1 MMFILKMLLEIVIMLILCVILSLIFVKKILRVKNKKKLPLKKVKTVVFDVKKLKEDVAMP 60 Query: 42 AIRG-QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI 100 A++G + ++++ + ++ D + +I+ + + E I + K+K K V+ Sbjct: 61 ALKGKEKLSYYQILQGLNNLAEDKNIKKVIIDVDKLNLTLSQLEEISKIFDKIKKNKEVV 120 Query: 101 TEVHEMAASAGYLISCASNIIVA-AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 S A+ I + S + G L + Y+K FL+K G+ + + Sbjct: 121 AIGTLFEESRYRQAMLANKIFMFDTRQSTLIFRGYLHKEFYLKSFLEKFGIRMNVLHIGD 180 Query: 160 MKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 K E ++++ + + ++++ D + FV LV R + +LS I+ G Sbjct: 181 YKVAGEKFSHNQMSEEKKESIKNIKDKVFEDFVELVKSKRGTDIEN-EILSGNLIFAGKK 239 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 +A + LID V +E+ + V + + + Sbjct: 240 KALEYKLIDGVADYDEIGINYKEDTVSIEDYIVMTKDKKEK 280 >gi|194324040|ref|ZP_03057815.1| peptidase [Francisella tularensis subsp. novicida FTE] gi|194321937|gb|EDX19420.1| peptidase [Francisella tularensis subsp. novicida FTE] gi|328676188|gb|AEB27058.1| Signal peptide peptidase SppA, 36K type [Francisella cf. novicida Fx1] Length = 270 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 60/262 (22%), Positives = 118/262 (45%), Gaps = 16/262 (6%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVS 72 + L ++ S S ++ PH+A I + G I D + + + ++ + S +IV Sbjct: 1 MILLLIVPSLFSSSKELVPHIALIKVNGVIADDAEANAERINQSLDDAYANKSVKGVIVE 60 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 ++SPGGS + I+ +Q ++++ P+ ++ AS GY I+ + I A + ++ Sbjct: 61 INSPGGSPVQSDEIYSHMQYLQHKYPTIPMYAVCTDVCASGGYYIAAGAKDIYANKMTIT 120 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ +DKLG+ ++ S K PFS P+ + ++D ++ F Sbjct: 121 GSIGVIGSGFGFTGLMDKLGIERRTYTSGENKDFLDPFSPQKPEQTAQFKKLLDQTHQVF 180 Query: 190 VRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 + V +SR G ++G +A+++GLID +++ + + Sbjct: 181 IAAVEKSRGDRLKDKNIDTTFSGEPFSGIQAQQMGLIDGFASVDQIRNEKF------NNI 234 Query: 248 KIKDWNPPKNYWFCDLKNLSIS 269 I D+ P ++ L S Sbjct: 235 DIVDYTRPLDFLTAVSHKLGNS 256 >gi|15677940|ref|NP_275112.1| putative protease [Neisseria meningitidis MC58] gi|7227382|gb|AAF42435.1| putative protease [Neisseria meningitidis MC58] gi|261393443|emb|CAX51088.1| putative peptidase [Neisseria meningitidis 8013] gi|316984012|gb|EFV62991.1| peptidase family S49 family protein [Neisseria meningitidis H44/76] gi|325127273|gb|EGC50210.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis N1568] gi|325139441|gb|EGC61981.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis CU385] gi|325201167|gb|ADY96622.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis H44/76] Length = 328 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57 K I L LV L F N+PH A + + G+I + ++ ++++ Sbjct: 45 KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114 E ++ A A+++ +SPGGS F I+++K + P V +M AS Y I Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I A +S+VGSIGV+ ++K+GV + + K PFS P+ Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++ ++++ + F++ V R + + GR++TGA+A KVGL+D +G Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280 V + + + D+ P ++ + + + + + ++ Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328 >gi|292490641|ref|YP_003526080.1| signal peptide peptidase SppA, 36K type [Nitrosococcus halophilus Nc4] gi|291579236|gb|ADE13693.1| signal peptide peptidase SppA, 36K type [Nitrosococcus halophilus Nc4] Length = 325 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 61/275 (22%), Positives = 120/275 (43%), Gaps = 18/275 (6%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV----EDNSPHVARIAIRGQI-----EDSQELIER 56 ++ + +L L V + + +PH A + + G I ++ + + Sbjct: 41 RRWNIFFKILFAGYLLVFLLLYLPNGLSAPGITTPHTALVEVDGLISADSFASAENIKKG 100 Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYL 113 ++ + + +I+ ++SPGGS I I +++ P I + ++ AS GY Sbjct: 101 LQTAFESEHSRGVILHINSPGGSPVQTGRINDEIHRLRQEHPNIPLYAVISDVCASGGYY 160 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 I+ A++ I A + S+VGSIG L ++KLGV + + K PFS + Sbjct: 161 IAVAADQIYADKASIVGSIGALINGFGFVDAMEKLGVERRLFAAGDYKGFLDPFSPIKES 220 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 Q +Q ++++ + F+++V + R + L G +WTG +A +GLID +G + V Sbjct: 221 EAQHIQKMLENIHKQFIQIVKDGRGERLKEDPSLFSGLVWTGEQALTLGLIDGLGSSDYV 280 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 + + KI ++ P + + Sbjct: 281 AREIVG------AEKIVNYTPKPGFLERFSAQIGA 309 >gi|254804075|ref|YP_003082296.1| putative ClpP class peptidase [Neisseria meningitidis alpha14] gi|254667617|emb|CBA03394.1| putative ClpP class peptidase [Neisseria meningitidis alpha14] Length = 328 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 131/290 (45%), Gaps = 21/290 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57 K I L LV L F N+PH A + + G+I + ++ ++++ Sbjct: 45 KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114 E ++ A A+I+ +SPGGS F I+++K + P V +M AS Y I Sbjct: 105 EAAYKNPQAKAIIIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I A +S+VGSIGV+ ++K+GV + + K PFS P+ Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++ ++++ + F++ V R + + GR++TGA+A+KVGL+D +G Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADAQKVGLVDGLGNIYS 284 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280 V + + + D+ P ++ + + + + + ++ Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328 >gi|318040377|ref|ZP_07972333.1| signal peptide peptidase SppA (protease IV) [Synechococcus sp. CB0101] Length = 270 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 70/260 (26%), Positives = 131/260 (50%), Gaps = 5/260 (1%) Query: 33 DNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + +ARIAI G I + +++ + + + + AL++ + SPGG+ + I AI Sbjct: 8 KSRRKLARIAIEGAIASGTRERVLKALREVEQRE-FPALLLRIDSPGGTVGDSQEIHAAI 66 Query: 91 QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 Q+++ + V+ ++AS G + A+ IVA S+ GSIGV+ + + L+++G Sbjct: 67 QRLRQKGCRVVASFGNISASGGVYVGVAAEKIVANAGSITGSIGVILRGNNLSRLLERIG 126 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 V ++VKS K SP + Q++Q+++DSSY FV V+E R++ +D Sbjct: 127 VQFETVKSGLYKDILSPDRALTAGERQLLQELIDSSYGQFVTAVAEGRDLEEGTVRSFAD 186 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSI 268 GR+++GA+A +GL+D +G +E + L + ++ PK + ++ Sbjct: 187 GRVFSGAQALVLGLVDQLGDEESARRLACELAELDVEKTRPINFGQPKKGLAGMIPGRNL 246 Query: 269 SSLLEDTIPLMKQTKVQGLW 288 + L + + L Q LW Sbjct: 247 FARLSEALHLELAWSGQPLW 266 >gi|110638854|ref|YP_679063.1| protease IV; signal peptide peptidase [Cytophaga hutchinsonii ATCC 33406] gi|110281535|gb|ABG59721.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Cytophaga hutchinsonii ATCC 33406] Length = 583 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 70/259 (27%), Positives = 115/259 (44%), Gaps = 10/259 (3%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSAT 67 V+ + + PH+A + G+I S+ + R+ D + Sbjct: 282 FVSYKKIIKGKPEKTTSSEPHIAVLFANGEIQSGKGDNETIGSETFCTDLRRLREDKNVK 341 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 A+++ ++SPGGSA A + I+R I + KPVI + +AAS GY I+ A + IVA+ + Sbjct: 342 AIVLRVNSPGGSALASDLIWREIMLAREVKPVIASMGNVAASGGYYIAMACDTIVASPAT 401 Query: 128 LVGSIGVLFQYPYVKPFLDK-LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 + GSIGV + L+ LG+S K+ S V ++Q+ V++ Y Sbjct: 402 ITGSIGVFGLLMNTEDLLNNKLGISTDREKTGLYSDLGSLTRPVTDAERMIIQNEVNAIY 461 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 F+R +E R+ + V + GR+W G +AK+ LIDV GG + Sbjct: 462 ATFIRKAAEGRHTSVETIEVHASGRVWAGKDAKENNLIDVFGGMNDAVMLAAKAANMGEK 521 Query: 247 RKIKDWNPPKNYWFCDLKN 265 + + KN L N Sbjct: 522 YALVYYPEQKNQALIALMN 540 Score = 94.7 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 98/266 (36%), Gaps = 27/266 (10%) Query: 18 VTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDSQ---------------------EL 53 + + V FS V R+ + +I + + EL Sbjct: 22 ILIIVALFSSGKEDVSAAVKENSVLRLTLDNEIIERESDKLFDGLLDPRGAASKIGLLEL 81 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 E I+ + +D +++ + + + + K I EM AGY Sbjct: 82 REAIQEAAVNDKIKGIVIEIKFANTGIATWKELRDELTAFKKSGKFIIAYGEMYTEAGYY 141 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FSEVN 171 ++ ++ I E+ ++ G+ Y K L K+GV + + K+ P ++ Sbjct: 142 LASVADEIYLPESGMLEFNGIGVNMLYFKNLLSKIGVKTEVFRVGKYKSAIEPLVNDHMS 201 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQ 230 + + + ++S Y + ++ SRNIP +SD + +AKK GL+ V Sbjct: 202 DEDREQVHLYINSLYSVMLNDIASSRNIPLASLKNISDSMLVRNAHDAKKYGLVTNVAYY 261 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPK 256 +E+ SL + ++I + K Sbjct: 262 DEMLSSLKKKLTVEPDQEIDFVSYKK 287 >gi|325955083|ref|YP_004238743.1| signal peptide peptidase SppA, 67K type [Weeksella virosa DSM 16922] gi|323437701|gb|ADX68165.1| signal peptide peptidase SppA, 67K type [Weeksella virosa DSM 16922] Length = 591 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 65/268 (24%), Positives = 125/268 (46%), Gaps = 11/268 (4%) Query: 30 HVEDNSPHVARIAIRGQIEDSQEL--------IERIERISRDDSATALIVSLSSPGGSAY 81 N + + G I++ E I ++ DD A+++ ++SPGGSA Sbjct: 303 DSNSNKNKIGILYASGAIKEGDGFDGIQSKTYTEAIREMAEDDKIKAVVLRINSPGGSAN 362 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 A E I + ++ +KPV+ ++AAS GY I+ +S I A +++ GSIGVL P V Sbjct: 363 ASEQILYELDLLRKKKPVVVSFGDVAASGGYYIAQSSERIFANPSTITGSIGVLGMIPNV 422 Query: 142 KPFLDKLGVSIKSVKSSPMKAE-PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 K + +G++ K++ + S + ++ A + M+ ++ YH FV +S++R + Sbjct: 423 KKLANSVGITTDIAKTNANADQLKSLTNPLSADAERTMRKNIELIYHQFVSHISKNRKMT 482 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ + G +W+G AK++GLID G ++ L + + P + F Sbjct: 483 FEAVDKVGGGHVWSGTRAKELGLIDEFGNLQDAVNYAAKLVKLDTYST--EAFPKRKDAF 540 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + + ++ + T+ Q L+ Sbjct: 541 EEFMASITGNNIDAKLAQELGTEGQALY 568 Score = 93.9 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 98/291 (33%), Gaps = 42/291 (14%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN------SPHVARIAIRGQIEDSQ------ 51 V I + S++ L ++ F + S + V I + I +S+ Sbjct: 8 VFSTIVGNLLTFSIILLVLIGFIFFSTLTSTPTKPIKDGSVLEITLDSPIMESEMDRIPM 67 Query: 52 ----------------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95 +++ I+ D+ + + + G + I +A++ K Sbjct: 68 NIFHLSKKSNNSFYLEDILRAIKNAETDNRIRGISLKIEHFQGGFTQADDIRKALEDFKK 127 Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 I + Y I ++ I + G+ + + K F DK G+ + + Sbjct: 128 SGKFIYAFTNNTSQTSYYIQTVADKIYQNPLGITMLQGLGAEVMFFKNFGDKYGIDFQVI 187 Query: 156 KSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRI 212 + K+ P+ ++++P+ + + + ++ + +++ R + + Sbjct: 188 RHGAYKSAVEPYLRNDLSPENREQITEYMNDIWTNISTKMAKDRKLSLIDFNTKVDSLYA 247 Query: 213 WTGAEAKKVGLIDVVGG-----------QEEVWQSLYALGVDQSIRKIKDW 252 + ++K+ LID + ++ L ++ + ++ Sbjct: 248 FIPEKSKENKLIDELMQESQYDLMILKKLDDSATDLSKKAKNKHFVSLDNY 298 >gi|108758821|ref|YP_630700.1| signal peptide peptidase SppA, 36K type [Myxococcus xanthus DK 1622] gi|108462701|gb|ABF87886.1| signal peptide peptidase SppA, 36K type [Myxococcus xanthus DK 1622] Length = 832 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 113/270 (41%), Gaps = 17/270 (6%) Query: 38 VARIAIRGQI---------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G I ++ +I +E+ D S A++V + S GG A Sbjct: 537 IAVVPVLGDIIGGRSREDPLGFSRLAGAETVIRALEQAQSDPSVAAIVVRVDSGGGEVLA 596 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 ++ A+ + KPV+ + +MAAS GY + ++ + A T+L GSIGV + P V+ Sbjct: 597 SHLMYEAVMEAAKHKPVVASMGDMAASGGYYAAIGAHEVFALPTTLTGSIGVFYIKPAVE 656 Query: 143 PFLDKLGVSI-KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L L +S+ +P+ + P+ + Q D+SY F+ V+ R + Sbjct: 657 GLLSGLLGVHQESLTRAPLADILDVWRPWTPEEQEAAQAWADASYDSFITEVALRRRMDK 716 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP-PKNYWF 260 K ++ GR+W+G +A GL+D +GG E S ++ +F Sbjct: 717 AKVDEVARGRVWSGQDALARGLVDKLGGLLEAVDSARMRAGIPPDEELDLVVMGEARGFF 776 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 L +P + + L A+ Sbjct: 777 SALGGEPGVRAALSLLPAQEPALPESLRAL 806 Score = 77.0 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 81/191 (42%), Gaps = 3/191 (1%) Query: 53 LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 L ++ ++DD ++V + S G S E + +A+ +++ + V G Sbjct: 321 LTRWLDLATQDDRLAGVVVKMESLPGVSWGKAEELRQALLRLRASGKRVMAVVLSTDDLG 380 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK--AEPSPFSE 169 Y ++ A++ I A + S++ G+ ++KLGV + K E +E Sbjct: 381 YFVASAADRIYALQESILYINGLAVHLQTYGGTMEKLGVHWDVARVGRFKTAPEQLSRTE 440 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 + +++ +D+ + + V E R +P ++ L + A ++GL+D + Sbjct: 441 PSDASLESTNAYLDTEVAVYEKAVQEGRKVPVERLHALWALGLPHPKRAVELGLMDGIIS 500 Query: 230 QEEVWQSLYAL 240 E+ + + L Sbjct: 501 STELDKKVAEL 511 >gi|161870990|ref|YP_001600170.1| protease IV [Neisseria meningitidis 053442] gi|161596543|gb|ABX74203.1| protease IV [Neisseria meningitidis 053442] Length = 303 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57 K I L LV L F N+PH A + + G+I + ++ ++++ Sbjct: 20 KNIWRAVSTLILVALIAGIFQKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 79 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLI 114 E ++ A A+++ +SPGGS F I+++K + P I +M AS Y I Sbjct: 80 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPDIPVYLVAEDMCASGCYYI 139 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I A +S+VGSIGV+ ++K+GV + + K PFS P+ Sbjct: 140 AAAADKIYADSSSIVGSIGVIGSSFDATELMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 199 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++ ++++ + F++ V R + + GR++TGA+A KVGL+D +G Sbjct: 200 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 259 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280 V + + + D+ P ++ + + + + + ++ Sbjct: 260 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 303 >gi|261400468|ref|ZP_05986593.1| signal peptide peptidase SppA [Neisseria lactamica ATCC 23970] gi|269209727|gb|EEZ76182.1| signal peptide peptidase SppA [Neisseria lactamica ATCC 23970] Length = 328 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 67/283 (23%), Positives = 124/283 (43%), Gaps = 13/283 (4%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57 K I L LV L F N+PH A + + G+I + ++ ++++ Sbjct: 45 KNIWRAVSTLILVALIAGIFQKDESALQLTGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114 E ++ A A+++ +SPGGS F I+++K + P V +M AS Y I Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I A +S+VGSIGV+ ++K+GV + + K PFS P+ Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++ ++++ + F++ V R + + GR++TGA+A+KVGL+D +G Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADAQKVGLVDGLGNIYS 284 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 V + + + D+ + L+ Sbjct: 285 VARDVVKAPDLVDYTRQDDFGTLLGRRLGAELKAGVREALQAV 327 >gi|78212133|ref|YP_380912.1| signal peptide peptidase A [Synechococcus sp. CC9605] gi|78196592|gb|ABB34357.1| signal peptide peptidase SppA, 36K type [Synechococcus sp. CC9605] Length = 273 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 60/257 (23%), Positives = 124/257 (48%), Gaps = 6/257 (2%) Query: 41 IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK- 97 I + G I + + ++ + + + + AL++ + SPGG+ + I A+ +++ + Sbjct: 19 IVVDGPITGATRKRVLNALREVKQRE-FPALLLRIDSPGGTVGDSQEIHAALLRLREQGC 77 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 V+ ++AS G I A+ IVA ++ GSIGV+ + + +K+G+ +VKS Sbjct: 78 RVVASFGNISASGGVYIGVAAEKIVANPGTITGSIGVILRGNDLSRVFEKIGIRFDTVKS 137 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 P K SP ++ ++Q+++DSSY FV +V++ RN+ + +DGR+++G + Sbjct: 138 GPFKDILSPDRPLSDAERALLQELIDSSYGQFVGVVAQGRNLELETVKRFADGRVFSGEQ 197 Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 A+ +GL+D +G ++ + L + + L + L+ + Sbjct: 198 AQALGLVDELGDEDHARRLAAQLADLDTDDIRPVTLGKQRRKLSGLLPGSQLLHQLQQRL 257 Query: 277 PLMKQTKVQGLWAVWNP 293 + Q LW ++ P Sbjct: 258 SIELMGSGQVLW-LYRP 273 >gi|304388757|ref|ZP_07370815.1| probable protease [Neisseria meningitidis ATCC 13091] gi|304337321|gb|EFM03497.1| probable protease [Neisseria meningitidis ATCC 13091] Length = 328 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57 K I L LV L F N+PH A + + G+I + ++ ++++ Sbjct: 45 KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLI 114 E ++ A A+I+ +SPGGS F I+++K + P I +M AS Y I Sbjct: 105 EAAYKNPQAKAIIIRANSPGGSPVVSNTAFEEIRRLKAQHPDIPVYLVAEDMCASGCYYI 164 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I A +S+VGSIGV+ ++K+GV + + K PFS P+ Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++ ++++ + F++ V R + + GR++TGA+A KVGL+D +G Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGDRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280 V + + + D+ P ++ + + + + + ++ Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328 >gi|290475449|ref|YP_003468337.1| protease IV, a signal peptide peptidase [Xenorhabdus bovienii SS-2004] gi|289174770|emb|CBJ81571.1| protease IV, a signal peptide peptidase [Xenorhabdus bovienii SS-2004] Length = 636 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 72/285 (25%), Positives = 137/285 (48%), Gaps = 28/285 (9%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGS 79 + + ++ ++A I G I D ++ + E++ + + A+++ ++SPGGS Sbjct: 323 KNSDQSNSNIAVIIAEGAIMDGRQSEGIAGGDTIAEQLREARLNPNIKAIVLRVNSPGGS 382 Query: 80 AYAGEAIFRAIQKVK---------------NRKPVITEVHEMAASAGYLISCASNIIVAA 124 A E I + ++ N+KP++ + +AAS GY IS +N I+A Sbjct: 383 ISASELIRSELVAIREGTTVKNKEGHTVKENQKPIVVSMGGLAASGGYWISTPANYIIAD 442 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 + +L GSIGV + L+ LGV+ + + P+ +NP +MQ ++S Sbjct: 443 KNTLTGSIGVFGVLNTYEKGLNYLGVNTDGISTYPLADISVT-KGINPMFSDVMQLSIES 501 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 YH F+ LV++SR ++ ++ GR+W+G++AKK GL+D +G ++ L + Sbjct: 502 GYHKFIELVAQSRQKTQNEIKEIAQGRVWSGSDAKKNGLVDQLGDFDDAVNKAAQLAGIK 561 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 ++ +W P+ F + L SS + +P Q+ + A Sbjct: 562 TVS--LNWMQPE-LSFSEKLMLEFSSSAQALLPNTLQSMLPAPIA 603 Score = 89.7 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 43/329 (13%), Positives = 104/329 (31%), Gaps = 40/329 (12%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH--VARIAIRGQIEDSQ------- 51 + F + I +L ++ + + + + + + G + D Sbjct: 19 LNFARQLISNLIFILLVIVVATGVLVYQQQSKSVDDYRGALYVDLSGIVVDQVSARSPLD 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 ++++ I R D T +++ L + G+ + I +AI Sbjct: 79 QFGRDLIGVSSSSSQETSLFDIVDSIRRAKHDAKITGMVLKLDNFLGADQPSMQYIGKAI 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 + K + + + + Y ++ +N + + V G + Y K LD L V Sbjct: 139 NEFKAAGKTVIAISDSYSQPQYYLASYANKVYLSPHGAVSLHGFSTNHLYYKSLLDSLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ P ++ +A Q ++ ++ + ++ +R IP + Sbjct: 199 STHIFRVGTYKSAVEPMTRDNMSEEARQADSLWLNELWNNYRNTIAVNRKIPAVRVLPEP 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 + A K L+D + + + L K ++ +Y Sbjct: 259 TQFIEEFRQAGGDSALYAAKNKLVDEIKPRNVIETELSNKFGWDEKNKHFNYISLYDYIA 318 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 S S + + + + G + Sbjct: 319 QQPIKNSDQSNSNIAVIIAEGAIMDGRQS 347 >gi|260592220|ref|ZP_05857678.1| signal peptide peptidase SppA, 67K type [Prevotella veroralis F0319] gi|260535854|gb|EEX18471.1| signal peptide peptidase SppA, 67K type [Prevotella veroralis F0319] Length = 612 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 65/285 (22%), Positives = 128/285 (44%), Gaps = 16/285 (5%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRD 63 V++ + +++ +A G I D + + +E+++ D Sbjct: 306 VSIDDMQGVEDEGNDNSDNQIAVYYAYGDIVDGAAGGLFAQGHTIDAQVVCKDLEKLTND 365 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 A+++ ++S GGSAYA E I+ I ++K KPV+ + MAAS Y IS SN IVA Sbjct: 366 KDVKAVVLRVNSGGGSAYASEQIWHQIMELKKLKPVVVSMGGMAASGAYYISAPSNWIVA 425 Query: 124 AETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 T+L GSIG+ +P L +KLG+ VK++ + + + + + + Sbjct: 426 EPTTLTGSIGIFGMFPDFSGLLTEKLGIKFDEVKTNKFSGFGTQSRPFSEEEMAYLNQYI 485 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + Y F V+E R ++ ++ G +++G +A K+GL+D +GG + L Sbjct: 486 NRGYKLFRHRVAEGRKKTDNQIEKIAQGHVYSGQDAMKIGLVDQLGGLDVAITKAAQLAK 545 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + I + K+ + ++ + ++ L++ + + Sbjct: 546 LSN-HSITSYPAQKSMFEQIIQESTPNNYLDEQLRSNLGDLYEPF 589 Score = 93.9 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 97/283 (34%), Gaps = 34/283 (12%) Query: 1 MEFVLKKIKTRYVM----------LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-- 48 M+ K + +V + +T+ + S + E V + + GQ+ Sbjct: 21 MKQFFKYVFASFVGTLLFSIIMGCFAFITIIGMIASTQTTNEIKDNSVLVLNLSGQLTER 80 Query: 49 -----------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 L+ I++ + + + + + +YA +A+ A+ Sbjct: 81 SEDNNIISQLQGKIGTIGLDNLLSAIDKAKNNKNIKGIYIEAGAFTADSYASLQAVRNAL 140 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 K I ++ Y +S ++N + + G+ Q +VK L K GV Sbjct: 141 VDFKKSGKWIITYADIYTQGTYYLSSSANKVYLNPQGQIDWHGLSSQPVFVKDLLKKFGV 200 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 ++ +K K+ F +++ + ++S + + VS +RNI + Sbjct: 201 KMQVMKVGTYKSATEMFTGDKMSDANREQTSAYLNSIWGNITKDVSATRNISVSSLNAYA 260 Query: 209 DGRIWTGA--EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 D I A + K L+D + ++V + I Sbjct: 261 DSMITFAAPTDYLKYKLVDGLLYTDQVKAVVKKQLGLDKDDDI 303 >gi|260772423|ref|ZP_05881339.1| protease IV [Vibrio metschnikovii CIP 69.14] gi|260611562|gb|EEX36765.1| protease IV [Vibrio metschnikovii CIP 69.14] Length = 616 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 74/266 (27%), Positives = 128/266 (48%), Gaps = 16/266 (6%) Query: 38 VARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 +A + G I D + + + +D A+I+ + SPGGSA+A E I Sbjct: 327 IAVVVASGAIMDGKQSRGNVGGDTVASLLRQARNNDQVKAVILRVDSPGGSAFASEVIRN 386 Query: 89 AIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 I+ +K KPV+ + +AAS GY IS +++ IVA T+L GSIG+ + L+ Sbjct: 387 EIEALKAAGKPVVASMSSLAASGGYWISMSADHIVAQPTTLTGSIGIFSVITTFEKGLNH 446 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 LG+ V +SP + + +N K +Q +++ Y F+ LVSE R + ++ + Sbjct: 447 LGIYTDGVGTSPF-SGVGVTTGLNEKVKDAIQMGIENGYQRFISLVSEQRGLSIEEVDKI 505 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPKNYWFCDLKN 265 + G +WT +A++ GL+D +G ++ Q L + ++ I++ P + L + Sbjct: 506 AQGHVWTAKDAQQAGLVDTLGDFDDAVQIAANLAQLEHYNLYWIQEPLTPAQRFIKGLFS 565 Query: 266 LSISSL---LEDTIPLMKQTKVQGLW 288 + + L L D IP Q Q L Sbjct: 566 EAHAQLGVNLSDLIPNALQPTTQQLL 591 Score = 103 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 52/336 (15%), Positives = 111/336 (33%), Gaps = 46/336 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVE-DNSPHVARIAIRGQIEDSQ-------- 51 + F+ I + +LS+ + +Y S S P + G I + Sbjct: 19 ITFIRLAITNLFFLLSIAVIYFLYLSADSSAPVVKQPSALIVNFSGPIVEQSTSLNPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93 E++E + DD+ T L+++L P + I +AI + Sbjct: 79 LTDSLLGREIPRENVLFEIVETLRHAKNDDNITGLVLALRDMPETNLTKLRYIAKAINEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ I A V G Y K LDKL V+ Sbjct: 139 KASGKPVYAVGDFYNQSQYYLASYADKIYLAPDGAVLLRGYSSYNLYYKSLLDKLNVNTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF +++ +A + + + ++ V+ +R+I D Sbjct: 199 VFRVGTYKSAVEPFIRDDMSDQARESASQWLSQLWGAYIDDVATNRHIDAQTLNPTMDEF 258 Query: 212 IWTGAEAK--------KVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDW-------NP 254 + +A +GL+D + +++V L + + + P Sbjct: 259 LALMKQASGNLADLSLNIGLVDELATRQQVRAQLAEVFGRHGEDSYNAISYDQYRPTVKP 318 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 ++ + S + D + ++ Sbjct: 319 RTRPQAKEIAVVVASGAIMDGKQSRGNVGGDTVASL 354 >gi|24373967|ref|NP_718010.1| signal peptide peptidase SppA, 67K type [Shewanella oneidensis MR-1] gi|24348413|gb|AAN55454.1|AE015683_1 signal peptide peptidase SppA, 67K type [Shewanella oneidensis MR-1] Length = 614 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 64/268 (23%), Positives = 119/268 (44%), Gaps = 14/268 (5%) Query: 35 SPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 V I G I + + + D AL++ + SPGGSA+A E Sbjct: 324 QDSVGIIVASGTILNGSQPAGQIGGDSTADLLRKARFDKHIKALVLRVDSPGGSAFASEQ 383 Query: 86 IFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I + + +K KPV+ + +AAS GY IS +++ I A T+L GSIG+ + Sbjct: 384 IRQELLALKAAGKPVVVSMGSLAASGGYWISASADYIFATPTTLTGSIGIFGMITTFEDS 443 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L LG+ V +S + ++P+ ++Q ++ Y F+ LV++ R I ++ Sbjct: 444 LASLGIHTDGVSTSEWAGLSVTRT-LSPQIESVIQRHIERGYLDFISLVAKERKISLEQV 502 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFCDL 263 ++ GR+W+G +A ++GL+D +G ++ L ++ + F Sbjct: 503 DKIAQGRVWSGKKALELGLVDELGDIDQAVTKAAQLANLSLFDTRLIEQELTPEQRFVQQ 562 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWAVW 291 S+S+ L ++ T ++ + W Sbjct: 563 MFASVSAYLPASLS--HSTLLEQMLNQW 588 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 33/277 (11%), Positives = 90/277 (32%), Gaps = 36/277 (12%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51 +K+ + + L ++ S ++ + + G I D + Sbjct: 23 RKLILNLIFFGFLALILIAIGSSEDIKVEDNSALVLNLAGSIVDQKQQVDPIEAALKQGN 82 Query: 52 -----------ELIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVKNRKPV 99 ++I I+ + D+ + +++ L+ ++I A+ + K Sbjct: 83 NGSSDGEILLADIIYVIDNATHDNRISTIVLDLAELKRAGISKLQSIGDALNRFKESGKK 142 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 + + Y ++ + I V G+ Y K L+KL + + Sbjct: 143 VVAIGNYYEQNQYFLASFATTIYLNPQGSVSLDGLSMYNQYFKSALEKLKIKAHIFRVGT 202 Query: 160 MKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSD 209 K+ P+ +++ A + ++ + + + V+++R I + L Sbjct: 203 FKSAVEPYMRDDMSDAAREASSALLADIWQSYTQTVAKNRQIDANALVLDSPSYLAQLDK 262 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + A + +D + EE + + ++ Sbjct: 263 AEGDSATMALNMKWVDTLATDEEFRKIMLDAVGKENN 299 >gi|148264257|ref|YP_001230963.1| signal peptide peptidase SppA, 36K type [Geobacter uraniireducens Rf4] gi|146397757|gb|ABQ26390.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Geobacter uraniireducens Rf4] Length = 323 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 75/284 (26%), Positives = 129/284 (45%), Gaps = 21/284 (7%) Query: 31 VEDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLSSPG 77 + P + + I G I + + E+ E +++ +DD +IV ++SPG Sbjct: 40 EGEGKPKLLLLDISGIITEKEKGGRLKQKPSMVAEVKEALQKAEKDDDIAGVIVRINSPG 99 Query: 78 GSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 G+ A + I + K RK PV + + AS GY ++ A++ I A T++ GSIGVL Sbjct: 100 GTVTASDIIHHELLAFKARKKVPVYACIMGIGASGGYYVATAADEISAHPTAVTGSIGVL 159 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 V+ L K+GVS +VKS K SPF P+ +++QDV++ + FV +V Sbjct: 160 LMRFEVEGLLTKIGVSEHTVKSGDKKDMLSPFRPATPEEEKIIQDVINRLFGRFVDVVQA 219 Query: 196 SRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 + + +L+DGRI+T +A + LID +G ++ ++ G + R I + Sbjct: 220 RPGNKLERKELEILADGRIYTAEQALQAKLIDRIGYLDDTVSAVKKAGNIEQARVISYYR 279 Query: 254 PPKNYWFCDLKNLSIS----SLLEDTIPLMKQTKVQGLWAVWNP 293 P + SL+ ++ G +W P Sbjct: 280 PGSYRGTIYSGEADAANQALSLISINGDGLEMLSDAGFMYLWKP 323 >gi|296125359|ref|YP_003632611.1| signal peptide peptidase SppA, 36K type [Brachyspira murdochii DSM 12563] gi|296017175|gb|ADG70412.1| signal peptide peptidase SppA, 36K type [Brachyspira murdochii DSM 12563] Length = 324 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 70/264 (26%), Positives = 121/264 (45%), Gaps = 17/264 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVS 72 +S + +A I + G I + +EL+E E +D A+++ Sbjct: 28 INSISANTQEGIAIIDLTGVITHAKRKTSIGLEYPSVTEELMEDFEYYLKDPKVKAIVLQ 87 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + SPGG+ + E + +Q +K + KP++ MAAS GY +S ++ I A E++L G Sbjct: 88 VDSPGGALTSCEEALKYLQDLKAKYPKPIVASFRSMAASGGYYMSMIADKIYANESTLTG 147 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ Q+ V +DK GV + ++KS K SPF E + QD+ F Sbjct: 148 SIGVISQFFNVSGLMDKYGVKMYTIKSGRNKDSLSPFREPREDELAYWQDMTYEFVAQFT 207 Query: 191 RLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 +V ++R + DGR+++G A +VGLID +G ++ + LG + Sbjct: 208 NVVEQARGDKIKGNREEIFDGRVFSGKRALEVGLIDAIGTLQDAIKDAAKLGGIEDEEPY 267 Query: 250 KDWNPPKNYWFCDLKNLSISSLLE 273 P + ++ IS ++ Sbjct: 268 IIKKPQQKDNLLNMLFSGISENIK 291 >gi|282899709|ref|ZP_06307673.1| Peptidase S49, SppA [Cylindrospermopsis raciborskii CS-505] gi|281195588|gb|EFA70521.1| Peptidase S49, SppA [Cylindrospermopsis raciborskii CS-505] Length = 273 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 63/260 (24%), Positives = 126/260 (48%), Gaps = 5/260 (1%) Query: 36 PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 +ARI I G I + ++E I+ + AL++ + SPGG+ + I+ A++++ Sbjct: 11 KQIARIEITGAIASGTRKRVLEAIKTVEE-KKFPALLLRIDSPGGTVGDSQEIYSALKEL 69 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + ++ ++AS G I + I+A ++ GSIGV+ + ++ L+K+GVS K Sbjct: 70 GKKTKIVASFGNISASGGVYIGMGAEHIMANPGTITGSIGVILRGNNLERLLEKVGVSFK 129 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 +KS P K S E+ ++Q+++D SY F++ V+++R +P + +DGRI+ Sbjct: 130 VIKSGPYKDILSFDRELTQPEENILQELIDVSYQQFIQTVAQARALPIETVKTFADGRIF 189 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI--SSL 271 TG +A +G++D +G +E+ + L + + + + S S Sbjct: 190 TGEQALNLGVVDRLGTEEDARRWTTELVGLDPQKTLCYTLEERKPLLSRVLPGSRYPKSS 249 Query: 272 LEDTIPLMKQTKVQGLWAVW 291 + I ++ +W Sbjct: 250 IRSGIDWLEFEMSTSGLPLW 269 >gi|121635773|ref|YP_976018.1| putative protease [Neisseria meningitidis FAM18] gi|120867479|emb|CAM11256.1| putative protease [Neisseria meningitidis FAM18] gi|325131359|gb|EGC54070.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis M6190] gi|325137388|gb|EGC59976.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis ES14902] Length = 328 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57 K I L LV L F N+PH A + + G+I + ++ ++++ Sbjct: 45 KNIWRAVSTLILVALIAGIFQKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLI 114 E ++ A A+++ +SPGGS F I+++K + P I +M AS Y I Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPDIPVYLVAEDMCASGCYYI 164 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I A +S+VGSIGV+ ++K+GV + + K PFS P+ Sbjct: 165 AAAADKIYADSSSIVGSIGVIGSSFDATELMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++ ++++ + F++ V R + + GR++TGA+A KVGL+D +G Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280 V + + + D+ P ++ + + + + + ++ Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKAGVREALQAVR 328 >gi|332529429|ref|ZP_08405388.1| peptidase S49 [Hylemonella gracilis ATCC 19624] gi|332041075|gb|EGI77442.1| peptidase S49 [Hylemonella gracilis ATCC 19624] Length = 382 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 62/254 (24%), Positives = 102/254 (40%), Gaps = 7/254 (2%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISRDDSATALIVSLSSPGGSAY 81 H A ++IRG+I E ++ + A A+++ + SPGGS Sbjct: 123 SHPGTATPQKHTAVVSIRGEISSDSEAGADLVLAAAREAFENTDAQAVVLLIDSPGGSPV 182 Query: 82 AGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 I I ++K +KPV V E ASA Y I+ +++ I + S+VGSIGVL Sbjct: 183 QAGIINDEILRLKALHKKPVYAVVEESCASAAYYIAVSADRIFVDKASIVGSIGVLMDGF 242 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 +DKLGV + + + K PFS + Q +++ + F+ +V R Sbjct: 243 GFTGLMDKLGVERRLMTAGENKGFLDPFSPQTVSQREHAQAMLNQIHQQFIAVVKAGRGK 302 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 +T G WTG +A ++GL D +G V + + + + Sbjct: 303 RLQETPDTFSGLFWTGEQAVQMGLADQLGSLGYVAREVVQAEALVDYTRTPNVAERLAKR 362 Query: 260 FCDLKNLSISSLLE 273 F L+ Sbjct: 363 FGAAVGAGAVRALQ 376 >gi|297559382|ref|YP_003678356.1| signal peptide peptidase SppA, 36K type [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843830|gb|ADH65850.1| signal peptide peptidase SppA, 36K type [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 562 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 58/284 (20%), Positives = 109/284 (38%), Gaps = 26/284 (9%) Query: 26 SWSSHVEDNSPHVARIAIRGQI---------------EDSQELIERIERISRDDSATALI 70 + + H+A I+ G I S + +D A++ Sbjct: 264 APQQLSRNTGGHIALISATGTISLGRTRRSPLGGGTVMGSDTVAAAFRAARKDPQVKAVV 323 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLV 129 + S GGS A +AI R + + + ++AAS GY ++ S+ +VA +L Sbjct: 324 FRVDSRGGSPTASDAIRRETELTSKAGIPVVAVMGDVAASGGYYVTLGSDAVVAQPGTLT 383 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ P + ++ GV+ SV++ + + ++D Y F Sbjct: 384 GSIGVITGKPVLGALKEQYGVTSDSVRTGEHAGMFDTDRPFTESEWERVNALLDEIYEDF 443 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V+ +R + ++ ++ GR+WTG +A + GL+D +GG E + + Sbjct: 444 TGKVAAARGMTREQVHEVARGRVWTGRDAHERGLVDELGGLETAVRLAREKAGAGPLP-- 501 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 P N ++ S + + Q + + W P Sbjct: 502 VRPFPRPNPLDRIRQHESSED--------VGASGPQTVVSAWGP 537 Score = 90.4 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 91/236 (38%), Gaps = 8/236 (3%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA- 110 +++E I R +RD AL+V + + + + + + + Sbjct: 50 DVLEGIRRGARDPRVAALLVRVDARSLGFAKVQELRDTVADFRAAGKPAVAWADSFGETG 109 Query: 111 ----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 Y ++CA + +V A T ++G G++ + +VK LDKL VS + K + Sbjct: 110 EGNLPYYLACAFSRVVMAPTGVLGLTGLMMRTTFVKGALDKLDVSYEVGARHEYKNAMNS 169 Query: 167 FSEV--NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLI 224 +E + +V S V VS +R +P ++ L + EA + L+ Sbjct: 170 VTETGYTAAQREASDRIVTSLGDQIVEAVSLARGLPREEVRALVSKGPFLAREAVEHKLV 229 Query: 225 DVVGGQEEVWQSLY-ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 D + ++EV+ L+ L + ++ + ++ +N L + Sbjct: 230 DGLAHRDEVYAQLFGELSGEPQLQFVTRYHRKHTAPQQLSRNTGGHIALISATGTI 285 >gi|325141318|gb|EGC63806.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis 961-5945] gi|325199204|gb|ADY94660.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis G2136] Length = 328 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57 K I L LV L F N+PH A + + G+I + ++ ++++ Sbjct: 45 KNIWRAVSTLILVALIAGIFQKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLI 114 E ++ A A+++ +SPGGS F I+++K + P I +M AS Y I Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPDIPVYLVAEDMCASGCYYI 164 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I A +S+VGSIGV+ ++K+GV + + K PFS P+ Sbjct: 165 AAAADKIYADSSSIVGSIGVIGSSFDATELMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++ ++++ + F++ V R + + GR++TGA+A KVGL+D +G Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280 V + + + D+ P ++ + + + + + ++ Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328 >gi|300711899|ref|YP_003737713.1| signal peptide peptidase SppA, 36K type [Halalkalicoccus jeotgali B3] gi|299125582|gb|ADJ15921.1| signal peptide peptidase SppA, 36K type [Halalkalicoccus jeotgali B3] Length = 331 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 61/272 (22%), Positives = 121/272 (44%), Gaps = 20/272 (7%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------------EDSQELIER 56 ++++ + + S + + +VA++A+ G I + +++E+ Sbjct: 41 LLVIATALIGLRIASRLASKAFTTYNVAQVAVEGPISRDGGGGRLPNGPNTTPTDDVVEQ 100 Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116 IE + D L+V L++PGG + I RAI P I ++ S GY I+ Sbjct: 101 IEAAADDGDVEGLLVKLNTPGGEVVPSDDIRRAIVAF--EGPAIAYTTDVCGSGGYWIAS 158 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 + ++A E SLVGSIGV+ +++G+S + + K P E++ Sbjct: 159 GCDELLAREASLVGSIGVIGSRVNAAALAERVGLSYERFAAGEFKDAGVPLREMDDHERA 218 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 +Q ++D Y FV V+E R + ++ ++ R++ G EA ++GL+D +G +E+ Sbjct: 219 YLQGLIDDFYGQFVERVAEGRELSEEEVRA-TEARVYVGEEALELGLVDALGTREDAEDR 277 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 L L +++ + P + + Sbjct: 278 LADLLDI--DPEVRAFEPDQGMMARLSIGSAS 307 >gi|309379804|emb|CBX21580.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 328 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 67/283 (23%), Positives = 124/283 (43%), Gaps = 13/283 (4%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57 K I L LV L F N+PH A + + G+I + ++ ++++ Sbjct: 45 KNIWRAVSTLILVALIAGIFQKDEGALQLTGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114 E ++ A A+++ +SPGGS F I+++K + P V +M AS Y I Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I A +S+VGSIGV+ ++K+GV + + K PFS P+ Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++ ++++ + F++ V R + + GR++TGA+A+KVGL+D +G Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADAQKVGLVDGLGNIYS 284 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 V + + + D+ + L+ Sbjct: 285 VARDVVKAPDLVDYTRQDDFGTLLGRRLGAELKAGVREALQAV 327 >gi|227551682|ref|ZP_03981731.1| S49 family peptidase [Enterococcus faecium TX1330] gi|257884398|ref|ZP_05664051.1| protease/peptidase [Enterococcus faecium 1,231,501] gi|257895718|ref|ZP_05675371.1| protease/peptidase [Enterococcus faecium Com12] gi|293377673|ref|ZP_06623862.1| signal peptide peptidase SppA, 36K type [Enterococcus faecium PC4.1] gi|293571866|ref|ZP_06682882.1| protease/peptidase protein [Enterococcus faecium E980] gi|227179123|gb|EEI60095.1| S49 family peptidase [Enterococcus faecium TX1330] gi|257820236|gb|EEV47384.1| protease/peptidase [Enterococcus faecium 1,231,501] gi|257832283|gb|EEV58704.1| protease/peptidase [Enterococcus faecium Com12] gi|291608120|gb|EFF37426.1| protease/peptidase protein [Enterococcus faecium E980] gi|292643673|gb|EFF61794.1| signal peptide peptidase SppA, 36K type [Enterococcus faecium PC4.1] Length = 341 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 66/276 (23%), Positives = 130/276 (47%), Gaps = 21/276 (7%) Query: 30 HVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSP 76 D++ + ++ + G I + +E+++ + D + + + ++SP Sbjct: 53 EEGDSTQKIVKLTVDGTIAAGGSSGLFASEGYNHENFMEQLKAVEEDPTVKGIFLEVNSP 112 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG Y I + + ++ P+ + MAAS GY IS ++ I A E ++ GSIGV Sbjct: 113 GGGVYESAEIAKKLDTIRKEHDIPMYVSMKNMAASGGYYISAQADKIFATEETVTGSIGV 172 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + L+KLGV +VKS +K S + ++Q +DS+Y FVR+VS Sbjct: 173 IMSGLNYSGLLEKLGVEDTTVKSGALKDMGSGTRPKTKEEEAVLQAYIDSAYQRFVRIVS 232 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 E RN + ++DGRI+ G +AK+VGL+D +G E+ Q++ + ++ +++ Sbjct: 233 EGRNKSEEAVKKIADGRIYDGVQAKEVGLVDELGFPEDALQAMRKEQKLEDA-ELVEYSS 291 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 P + + ++ +K ++ + ++ Sbjct: 292 PSSGFASTWLGSKLA-----EFQGLKSSETSQILSI 322 >gi|209526666|ref|ZP_03275190.1| signal peptide peptidase SppA, 36K type [Arthrospira maxima CS-328] gi|209492902|gb|EDZ93233.1| signal peptide peptidase SppA, 36K type [Arthrospira maxima CS-328] Length = 273 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 69/260 (26%), Positives = 133/260 (51%), Gaps = 5/260 (1%) Query: 36 PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 +ARI I G I + ++E ++ + AL++ + SPGG+ + I+ A++ + Sbjct: 11 KQIARIEISGAIAGDTRKRVLEALKTVEE-RKFPALLLRIDSPGGTVGDSQEIYSALKSL 69 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + + ++ ++AS G I + I+A ++ GSIGV+ + ++ L+K+GVS K Sbjct: 70 RKKVKIVASFGNISASGGVYIGMGAEHIMANPGTITGSIGVILRGNNLERLLEKVGVSFK 129 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 +KS P K + E+ Q++Q+++D+SY FV V+ESRN+ + +DGRI+ Sbjct: 130 VIKSGPYKDILAFDRELTEPEQQILQELIDTSYQQFVSTVAESRNLEIEAVRSFADGRIF 189 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLK-NLSISSL 271 TG +A ++G+ID +G +E+ + + D + PK+ L NL+ ++ Sbjct: 190 TGEQALQLGVIDRLGSEEDARRWTAEMVNLDPDKTECCTLEKPKSLLNRVLSNNLAATNR 249 Query: 272 LEDTIPLMKQTKVQGLWAVW 291 + D ++ +W Sbjct: 250 ISDARNWVEFELSTSGLPLW 269 >gi|218962159|ref|YP_001741934.1| putative protease IV (signal peptide peptidase) [Candidatus Cloacamonas acidaminovorans] gi|167730816|emb|CAO81728.1| putative protease IV (signal peptide peptidase) [Candidatus Cloacamonas acidaminovorans] Length = 571 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 62/255 (24%), Positives = 121/255 (47%), Gaps = 14/255 (5%) Query: 21 TVVYFSWSSHVEDNSPHVARIAIRGQIE-------DSQELI------ERIERISRDDSAT 67 + ++S + +A + + G I SQ +I + I++I + Sbjct: 274 FMKIANYSPTAKKKGDKIAVVYLNGNIAPVSGSNFGSQGIISEAKVKKIIKQIHQHKDIK 333 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 A+++ ++SPGGSA E I++ + K+K P++ + AAS GY ISCA + ++A + Sbjct: 334 AVVLRINSPGGSALESELIYQQLLKLKREYPLVVSMGGTAASGGYYISCAGDYLIADPGT 393 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 L GSIGV+ P + K+GV +++K SP +P ++ ++ ++Y+ Sbjct: 394 LTGSIGVIGLIPEMAGLGKKIGVRSQTLKYGKFAGALSPLEHYDPALIESLKRSSTATYN 453 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F + V +R I + +++GRI++ +A LID +G ++ L S Sbjct: 454 EFKQRVMTARKISPENIEAVAEGRIFSAEDALTHKLIDEIGTLDKAIAKAAGLAKVTSYS 513 Query: 248 KIKDWNPPKNYWFCD 262 + ++ ++YW Sbjct: 514 SV-NFPKKESYWEAL 527 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 102/274 (37%), Gaps = 25/274 (9%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED----------------S 50 + L + + + S + I D Sbjct: 14 FVIALLAAFILGFIFTFGSHGAKSAKIPSNAWLYVNPSALIPDYNELEELRFVNVSSPSV 73 Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 QE+ +I+ ++D+ +++ + A E + AI + + E Sbjct: 74 QEICAKIKLAAKDERIKGILLQPQMIMTNYPALEEMSLAIGTFQKSGKPVLAFGENFTQG 133 Query: 111 GYLISCASNIIVAAETSLV--GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167 YL++ ++ I ++ GV + K LDKLG+ + ++S K PF Sbjct: 134 DYLLASCADKIYMEPSASAGLALQGVSANMLFYKEMLDKLGIKMHILQSGEYKGAGEPFS 193 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR---IWTGAEAKKVGL 223 +E++ + + + Y+ + LV+++R + + + + R + +AK++ L Sbjct: 194 QTELSKGTRENIDAALYDIYNHLLSLVAQNRKLETTQVKDIFEKRDDFFLSAEKAKELKL 253 Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 ID ++E+ +SL + + KI +++P Sbjct: 254 IDYAMSRDEMLKSLG--LEEDNFMKIANYSPTAK 285 >gi|91204301|emb|CAJ71954.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 362 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 67/289 (23%), Positives = 136/289 (47%), Gaps = 28/289 (9%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVE----------DNSPHVARIAIRGQIEDSQE 52 F L + + +++ + + + + + +A I+++G + + Sbjct: 38 FFLCTLFSFLLLIGSLMMGKSIIAGGAMDKKYVTEEIVEGSGENKIAVISVKGILTNETT 97 Query: 53 -------------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--K 97 + E++E + D A+++ + SPGG A + ++ I K K K Sbjct: 98 GNLFIEKPSIVEIVKEQLEHAANDVQVKAVLLEIESPGGGITASDIMYHQIIKFKKNTQK 157 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 ++ + ++AAS GY I+ A++ IVA T++ GSIGV+ + F+++ GV S+ S Sbjct: 158 KIVVYMEDIAASGGYYIASAADFIVAHPTTITGSIGVIMPLINISEFINRHGVVDNSIAS 217 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 MK SP ++ + +++Q++++ Y FV +VS RN+ ++ ++DGRI+TG + Sbjct: 218 GDMKEIGSPLKQMTEEETEILQNIINEMYMQFVEVVSIGRNLDVEEVKKIADGRIYTGKQ 277 Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 A + GL+D +G E+ ++ + Y F +L L Sbjct: 278 ALEAGLVDKIGYLEDAIGMAKKASGIDEATIVRY---KRLYGFAELFGL 323 >gi|325143533|gb|EGC65854.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis M01-240013] Length = 328 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57 K I L LV L F N+PH A + + G+I + ++ ++++ Sbjct: 45 KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114 E ++ A A+++ +SPGGS F I+++K + P V +M AS Y I Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I A +S+VGSIGV+ ++K+GV + + K PFS P+ Sbjct: 165 AAAADKIYADSSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++ ++++ + F++ V R + + GR++TGA+A KVGL+D +G Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGDRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280 V + + + D+ P ++ + + + + + ++ Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328 >gi|163748928|ref|ZP_02156179.1| signal peptide peptidase SppA, 67K type [Shewanella benthica KT99] gi|161331304|gb|EDQ02192.1| signal peptide peptidase SppA, 67K type [Shewanella benthica KT99] Length = 615 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 63/252 (25%), Positives = 114/252 (45%), Gaps = 12/252 (4%) Query: 35 SPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 V I +G I + + + + DD A+++ + SPGGSA+A E Sbjct: 326 EDTVGIIVAKGTILNGNQPAGQIGGESTSQLLRKARFDDKIKAVVLRVDSPGGSAFASEQ 385 Query: 86 IFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I + + +K KPV+ + AAS GY IS +++ I A T+L GSIG+ + Sbjct: 386 IRQEVLALKTAGKPVVVSMGSYAASGGYWISASADYIYATPTTLTGSIGIFGMITTFEDS 445 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L LG+ V +S S + P+ ++Q ++ YH F+ LV++ R++ + Sbjct: 446 LSSLGIHTDGVATSQWAG-ISVAKGLTPEIKSVIQRHIERGYHDFISLVAKERDMSLEDV 504 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFCDL 263 ++ GR+W+G +A ++GLID +G ++ + +I + F Sbjct: 505 DAIAQGRVWSGRKALELGLIDELGDLDDAVAKAAEMADLAEFDSQIIEQELSPKELFIQE 564 Query: 264 KNLSISSLLEDT 275 S ++ L + Sbjct: 565 MFASAAAYLPQS 576 Score = 82.7 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 40/313 (12%), Positives = 105/313 (33%), Gaps = 40/313 (12%) Query: 5 LKKIKTRYVMLSLVTLTVVYFS--WSSHVEDNSPHVARIAIRGQIEDSQ----------- 51 +K+ + + + +V + V+ S + + G I + + Sbjct: 22 FRKLVLNLLFFGFLAIIIVAVAVGIDDDVQLESGSALVLDLAGSIVEQKRQVDPIEAAMK 81 Query: 52 --------------ELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNR 96 +++ I+ + D+ +A+++ + + ++I A+ + K Sbjct: 82 SSKNSHGNGEILLADILNVIDNAAADERISAIVLDIGHLRWTGISKLQSIGDALTRFKAT 141 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 I Y ++ ++ I V G+ Y K LDKL ++ + Sbjct: 142 GKPILATANWYGQNQYFLASFADTIYLNPQGSVELNGLSRYRQYYKSALDKLKINAHVFR 201 Query: 157 SSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLV 206 K+ P+ +++P A + ++++ + + VS +R+I ++ Sbjct: 202 VGTFKSAVEPYIRDDMSPAAKEANIELLNDIWASYAATVSSNRDIKPEQLVLDAEDYLRE 261 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 L + A + +D + E + + + Y + L + Sbjct: 262 LDKADGKSADMAINMHWVDELASAEAFRLEMIDTVGKAAEGN--SYKQVSLYDYQSLMST 319 Query: 267 SISSLLEDTIPLM 279 +EDT+ ++ Sbjct: 320 QADLFIEDTVGII 332 >gi|73667234|ref|YP_303250.1| signal peptide peptidase A [Ehrlichia canis str. Jake] gi|72394375|gb|AAZ68652.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Ehrlichia canis str. Jake] Length = 288 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 77/251 (30%), Positives = 155/251 (61%), Gaps = 2/251 (0%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVED--NSPHVARIAIRGQIEDSQELIERIE 58 + +K + ++ +L + + S V + ++ ++A++ I G+IE S+E+ ++ Sbjct: 11 LNSKVKLWRFLVFLMVFASLILCNYVDISKVSNFLDNKYIAKVNIEGKIETSEEMDSLLK 70 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 +I++D LI++++SPGG+ E +++ I+ + KPV+ ++++AAS GY+ + A+ Sbjct: 71 KIAKDSHVIGLILNINSPGGTITGSEILYQNIRNIAKNKPVVAVLNDLAASGGYMTAIAA 130 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I+A T++ GSIGVL QY V +K+G+S+KS+KSS +KA SPF E + + + Sbjct: 131 DYIIARHTTITGSIGVLMQYFGVSSLAEKMGISLKSIKSSNLKAATSPFEEFTKEKEESI 190 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 + +V+ SY++F+ +V++ R + + L ++DG I+TG+EA +GL+D +GG++E Sbjct: 191 RRIVNESYNYFIDIVADRRKMEKSQVLKIADGSIYTGSEALSIGLVDQIGGEDEAISWFQ 250 Query: 239 ALGVDQSIRKI 249 + ++ K+ Sbjct: 251 SQNINTQKVKV 261 >gi|325207025|gb|ADZ02478.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis M04-240196] Length = 328 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57 K I L LV L F N+PH A + + G+I + ++ ++++ Sbjct: 45 KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114 E ++ A A+++ +SPGGS F I+++K + P V +M AS Y I Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I A +S+VGSIGV+ ++K+GV + + K PFS P+ Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++ ++++ + F++ V R + + GR++TGA+A KVGL+D +G Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGSRLKFQQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280 V Q + + D+ P ++ + + + + + ++ Sbjct: 285 VAQDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328 >gi|15839274|ref|NP_299962.1| protease IV [Xylella fastidiosa 9a5c] gi|9107924|gb|AAF85482.1|AE004074_6 protease IV [Xylella fastidiosa 9a5c] Length = 633 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 63/267 (23%), Positives = 124/267 (46%), Gaps = 11/267 (4%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVS 72 + S S +A + G+I + + + +D+ A+++ Sbjct: 320 LSLLDAQSVPLGTSSQIAVVVAAGEIKGGDQPAGYIGGESTSMLLRKARDEDAVKAVVLR 379 Query: 73 LSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 ++SPGG +A E I R + ++ KPV+ + +MAAS GY IS ++ I A +++ GS Sbjct: 380 VNSPGGEVFASEQIRREVVALRKVGKPVVVSMGDMAASGGYWISMDADRIYADPSTISGS 439 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IG+ P + LDK+GV V ++ ++P+ QM+Q+V+D Y F Sbjct: 440 IGIFGLMPNITRTLDKMGVHTDGVGTTRFAGALDITRTLDPQVGQMLQNVIDKGYADFTS 499 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIK 250 V+++R+ + ++ GR+W+GA+AK+ GL+D +GG E + ++ Sbjct: 500 KVAQARHRSVQEIDSIARGRVWSGAQAKERGLVDELGGVREAITDAAKRAKLGEGHYSVR 559 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIP 277 + + + + N+ + + + Sbjct: 560 YVDKAVSPFMQFIINMMSTRIGNWALG 586 Score = 65.8 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 41/251 (16%), Positives = 88/251 (35%), Gaps = 16/251 (6%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAAS 109 ++LI IE ++D +++ L S YA + A+Q +K + E Sbjct: 99 RDLIRVIEAAAKDKKVERVLLDLDKLQPSGYASLREVVAALQNLKGSGKQLVAFSESMTQ 158 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPF- 167 + YL++ ++ I V G+ Y + L +KLGV + + K+ PF Sbjct: 159 SQYLLAAQADEIYLDPMGSVLLEGLAHYRQYFRKGLQEKLGVDVHLFRVGEYKSAAEPFV 218 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW--------TGAEA 218 + A + ++ + ++ ++++R + + + A Sbjct: 219 LDAASADAKEADLFWMNDIWQRYLADIAKARKLDSAHLNTIVERLPQDIAANHGDLAKYA 278 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIR----KIKDWNPPKNYWFCDLKNLSISSLLED 274 L+D + +E+V Q + GV + D+ + L SS + Sbjct: 279 LAQKLVDGLKTREQVNQLMIQRGVADKKADGGFRNVDFGTYLSLLDAQSVPLGTSSQIAV 338 Query: 275 TIPLMKQTKVQ 285 + + Sbjct: 339 VVAAGEIKGGD 349 >gi|225175869|ref|ZP_03729862.1| signal peptide peptidase SppA, 36K type [Dethiobacter alkaliphilus AHT 1] gi|225168793|gb|EEG77594.1| signal peptide peptidase SppA, 36K type [Dethiobacter alkaliphilus AHT 1] Length = 304 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 71/267 (26%), Positives = 134/267 (50%), Gaps = 21/267 (7%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPH--------VARIAIRGQIEDS------------QE 52 ++L+++ +TV + +P VA I + G I D ++ Sbjct: 10 IVLAVIGITVFFALAQIFRPPGAPQRGAGSAQAVAVIHLEGIIMDGQIQPLFGAPGGTRQ 69 Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAG 111 +I +++ + D A+++ ++SPGG+ A + ++ +Q++K KPV+ V EMAAS G Sbjct: 70 IIGQLQDAAADRDVAAVVLRINSPGGTPAASQEVYNEVQRLKESGKPVVVSVGEMAASGG 129 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ IVA S+ GSIGV+ + + LG+ + KS K S ++ Sbjct: 130 YWIASAADEIVANPASVTGSIGVIMETTNFVELYEMLGIESEVFKSGQYKDMGSAARPLS 189 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 +++Q +VD + FV +V+ R++ + L ++DGRI+TG +AK++GL+D +G Sbjct: 190 DDEREIIQSMVDDIFQQFVDVVASGRSLDREAVLEVADGRIFTGRQAKELGLVDRLGDLN 249 Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNY 258 + L + +IK+ + Sbjct: 250 TAIDAAGELAGIEGTPRIKEMRTRSPW 276 >gi|224825741|ref|ZP_03698845.1| peptidase S49 [Lutiella nitroferrum 2002] gi|224601965|gb|EEG08144.1| peptidase S49 [Lutiella nitroferrum 2002] Length = 312 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 68/275 (24%), Positives = 115/275 (41%), Gaps = 18/275 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVE-----DNSPHVARIAIRGQIEDS----QELIERI 57 KI R L ++ V ++ H A + ++G I+ ++LI + Sbjct: 30 KIFFRLAWLVIIGAAVFGLFYTKDEVPGERLIGDGHTATLQLKGVIDSDNDTAEKLITGL 89 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAGYLI 114 RD + +I+ +SPGGS ++ I++ + P+ V E+ AS Y I Sbjct: 90 NDAYRDKNTRGIIIQANSPGGSPVLSGMVYDEIRRQKKLHPAIPLYVVVEEVCASGCYYI 149 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I + S++GSIGVL ++KLGV + S KA PFS +NPK Sbjct: 150 AAAADKIFVDKASIIGSIGVLSDGFGFTGVMEKLGVERRLKTSGENKAMGDPFSPLNPKQ 209 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 + Q ++D + F+ V + R L G IW G ++ +GL D G V Sbjct: 210 EAIRQQLLDDIHQQFISAVKDGRGARLHNDPELFSGLIWLGTKSIPLGLADGYGTVHSVA 269 Query: 235 QSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 + + K D+ P + + L + Sbjct: 270 RDVIK------SEKTVDYTPEDTFPSRFARRLGVE 298 >gi|325109492|ref|YP_004270560.1| signal peptide peptidase SppA, 36K type [Planctomyces brasiliensis DSM 5305] gi|324969760|gb|ADY60538.1| signal peptide peptidase SppA, 36K type [Planctomyces brasiliensis DSM 5305] Length = 358 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 61/273 (22%), Positives = 127/273 (46%), Gaps = 24/273 (8%) Query: 7 KIKTRYVMLSLVTLTVVYFS------------------WSSHVEDNSPHVARIAIRGQIE 48 + TR + ++ + ++ F+ + S + + +A I++ I Sbjct: 40 RWGTRLLTIAFIFSLLLNFALFSAYGTYLGEFDGAQERYHSGSKTATDKLALISVEATIM 99 Query: 49 D--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 ++ +I+ I + + DD +V + SPGG I+ ++K+ +KPV ++ + Sbjct: 100 PPFTERIIDHIRKATEDDDVKGAVVVVDSPGGLVADSHQIYHELKKLAEKKPVFVQMKRI 159 Query: 107 AASAGYLISCA---SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 AAS GY ++ S IVA T+ GSIGV+ + + ++GV + + + K Sbjct: 160 AASGGYYVAMGAGKSGKIVAEPTTWTGSIGVIIPHYDLTELAGQIGVKSEPLTTGEFKDS 219 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-NIPYDKTLVLSDGRIWTGAEAKKVG 222 S F ++ + + + ++D +Y F+ ++ + R ++ + ++ GRI+T +A G Sbjct: 220 LSSFKPLSDRERDVWKGILDDAYQRFLSVIEQGRPDMSRQQIEDVATGRIFTSQQALAEG 279 Query: 223 LIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 L+D +G +E L +S R I+ +PP Sbjct: 280 LVDEIGFLDETIAGLAEQLNLKSYRVIEYQHPP 312 >gi|196249953|ref|ZP_03148648.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. G11MC16] gi|196210467|gb|EDY05231.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. G11MC16] Length = 335 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 67/280 (23%), Positives = 127/280 (45%), Gaps = 18/280 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSS 75 D + + + G IED+ Q ++ I+++ DDS A+++ ++S Sbjct: 54 EDGDPLKKIVVLEVNGVIEDTGEAETFFSSSFYNHQAFLKMIKQVKEDDSVKAIVLRINS 113 Query: 76 PGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 PGG + + K+K P+ + MAAS GY I+ A + + A+ ++ GSIG Sbjct: 114 PGGGVVESAEVHNQLLKLKKETKKPIYVSMGAMAASGGYYIATAGDKLFASPETITGSIG 173 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V+ Q + K GV + ++KS P K +P ++ +++Q +++ SY FV ++ Sbjct: 174 VIMQSINYEGLAKKYGVELVTIKSGPYKDIMNPARKMTDAEQEILQRLINQSYEGFVDVI 233 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW- 252 E R + + L+DGRI+ G +AK + LID G ++ +L + +K Sbjct: 234 VEGRKLSEEAVRKLADGRIYDGRQAKALQLIDEFGYLDDTIAALKKEHRLSGAQVVKYVS 293 Query: 253 -NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 P + + N + + I L+ + L ++ Sbjct: 294 DTPWSSLFGVISNNAKPETEASELIRLLSRPSSPRLMYLF 333 >gi|121611687|ref|YP_999494.1| peptidase S49 [Verminephrobacter eiseniae EF01-2] gi|121556327|gb|ABM60476.1| peptidase S49 [Verminephrobacter eiseniae EF01-2] Length = 323 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 69/288 (23%), Positives = 126/288 (43%), Gaps = 12/288 (4%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSW----SSHVEDNSPHVARIAIRGQIE-----DSQELI 54 +++ +T + + LV + + F + ++PH A + I+G+I ++ ++ Sbjct: 28 SIRRWRTFFRLAWLVLMASIAFVTLRQTVPGISKSAPHTAMVDIKGEIAAGAGASAEFVV 87 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGY 112 + +D + AL++ ++SPGGS I I+++K + KP+ V E ASA Y Sbjct: 88 AAMRSALENDGSQALVLLINSPGGSPVQAGIINDEIRRLKAKHNKPIYAVVEETCASAAY 147 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 I+ A++ I + S+VGSIGVL ++KLGV + + S K PFS Sbjct: 148 YIAAATDDIYVDKASIVGSIGVLMDGFGFTGTMEKLGVERRLLTSGENKGFLDPFSPQTD 207 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231 K Q ++D + F+ V R T G WTG +A ++GL D +G + Sbjct: 208 KQRAYAQTMLDQIHQQFIAAVKAGRAERLKSTSSDTFSGLFWTGQQAVEMGLADKLGNLD 267 Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 V + + + ++ F L ++L + + Sbjct: 268 YVAREVVKAEDIIDYTRRENVAELLAKRFELLAKRFGTALGVGIMKSL 315 >gi|329118386|ref|ZP_08247092.1| signal peptide peptidase SppA [Neisseria bacilliformis ATCC BAA-1200] gi|327465432|gb|EGF11711.1| signal peptide peptidase SppA [Neisseria bacilliformis ATCC BAA-1200] Length = 352 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 66/265 (24%), Positives = 107/265 (40%), Gaps = 15/265 (5%) Query: 31 VEDNSPHVARIAIRGQIEDSQE-----LIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 N H A I + G I + L + +E D + +I+ +SPGGS Sbjct: 93 GAKNKEHTAVIKLNGVIGGGYQDQVALLRDGLEAAYADKNVKGIIIRANSPGGSPVVSNT 152 Query: 86 IFRAIQKV---KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 F I+++ P+ +M AS Y I+ A++ I A +SLVGSIGV+ Sbjct: 153 AFNEIRRLKEQHKDIPLYLVAEDMCASGCYYIAAAADKIYADPSSLVGSIGVIGGSFDFT 212 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 +DKLG+ + + K PFS P+ + Q ++D + F+ V R Sbjct: 213 GIMDKLGIKRRLRTAGSNKGMGDPFSPETPEQTAIWQQMLDDIHGEFINAVKTGRGSRLK 272 Query: 203 KTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 + GRI+TG EA+K GLID G V + + D+ P ++ Sbjct: 273 TNDPQIFSGRIYTGLEAQKNGLIDGFGNIYSVARDQIK------APDLVDYTPDEDDLAR 326 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQG 286 + S + ++ +G Sbjct: 327 AISRRLNSEVQNQVRQSLENLDTKG 351 >gi|85059328|ref|YP_455030.1| protease 4 [Sodalis glossinidius str. 'morsitans'] gi|84779848|dbj|BAE74625.1| protease IV [Sodalis glossinidius str. 'morsitans'] Length = 616 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 67/281 (23%), Positives = 126/281 (44%), Gaps = 15/281 (5%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSA 66 + +++ + + + +A I G I D ++I D Sbjct: 304 AFNGISIYDYQPVTSTQQGG-QIAVIFANGAIIDGPETPGSVGGDTTADQIRDARMDPDI 362 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAE 125 A++ ++SPGGS A E I + + KPV+ + +AAS GY +S +N I+A+ Sbjct: 363 KAIVFRVNSPGGSVTASEVIRSELAAARAAGKPVVISMGGIAASGGYWVSTPANYIIASA 422 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 ++L GSIG+ V+ LD +GV V +SP+ S + + QMMQ V++ Sbjct: 423 STLTGSIGIFGVVNTVENSLDSIGVHTDGVATSPLADV-SLTKTLPAEFSQMMQLSVENG 481 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y F+ LV++SR+ ++ + G +W G++A + GL+D VG ++ L Sbjct: 482 YRNFITLVAQSRHKTPEEIDKIGQGHVWIGSDAVQNGLVDRVGDFDDAVSKAAELAQL-K 540 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 ++ + + +L S+ + +P + Q+ + Sbjct: 541 QYQLNWYL--DDPGLWNLLFTQTSASVYALLPQLIQSWLPA 579 Score = 79.3 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 44/315 (13%), Positives = 101/315 (32%), Gaps = 45/315 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + F+ + I ++++ ++ + + + + + G + D Sbjct: 19 LNFIREFILNVFLVVLIIVVGIYLQMRHTPPTLAKG-ALVMDLTGTVVDKPAMNNKFRQL 77 Query: 52 ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92 ++++ + + D + T L++SL G+ A E I +A+++ Sbjct: 78 GRELLGASSNRLQENSLFDVVDTLRQAKGDANITGLVLSLKDFAGADQASLEYIGKALRE 137 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 ++ I V + + A Y ++ +N I V G+ Y K LDKL V+ Sbjct: 138 FRDSSKPIYAVGDSYSQAQYYLASYANKIYLTPQGAVDLHGIATNNLYYKTLLDKLKVNS 197 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203 + K+ PF ++ A + V + ++ V+ +R + Sbjct: 198 HIFRVGTYKSAVEPFLRDNMSDDAREADSRWVGQLWQHYLTTVATNRQTTPAQLFPGAQA 257 Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGG---QEEVWQSLYALGVDQSI---RKIKDWNPPK 256 L T A +D V + + I D+ P Sbjct: 258 MLDDLRAVEGNTAQFALNNKWVDEVASRSAIDAALTKAFGWNKRDKAFNGISIYDYQPVT 317 Query: 257 NYWFCDLKNLSISSL 271 + + ++ Sbjct: 318 STQQGGQIAVIFANG 332 >gi|325578196|ref|ZP_08148331.1| signal peptide peptidase SppA [Haemophilus parainfluenzae ATCC 33392] gi|325159932|gb|EGC72061.1| signal peptide peptidase SppA [Haemophilus parainfluenzae ATCC 33392] Length = 620 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 120/236 (50%), Gaps = 11/236 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGG 78 S + VA + + G I D + +++ + + ++ A+++ ++SPGG Sbjct: 319 FSVDPNEKNIVAVVNVEGTIIDGESDEESAGGDTIVKLLRQAYDNEKVKAVVLRVNSPGG 378 Query: 79 SAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 SA+A E I + + ++ KPV+ + MAAS GY IS ++ IVA + ++ GSIG+ Sbjct: 379 SAFASEIIRQETENLQKSGKPVVVSMGGMAASGGYWISSTADYIVADKNTITGSIGIFAL 438 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 +P + + K+G+S V ++ + + S + + Q +++ Y F+ +VS R Sbjct: 439 FPTFENTIKKMGMSTDGVATTDLAETSAL-SPLGKNTQDIYQLSIENGYDRFLEVVSRGR 497 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 + DK ++ G++W G +A+K GL+D +G + + AL + + +++ Sbjct: 498 QLSKDKVDKIAQGQVWLGQDAQKNGLVDELGDIDVAIDKVVALVNQHPDKYMDNFS 553 Score = 70.4 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 86/237 (36%), Gaps = 34/237 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVE-----DNSPHVARIAIRGQIEDSQ---- 51 + F+ + + +V L V + + + + G + D+ Sbjct: 15 LNFI-RNLVMNFVFLLFVLALIFLVGLLGDGKKSQVLSGDQGALYLNLTGYLADNTEDML 73 Query: 52 ---------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRA 89 ++++ I D+ L+++L+ G E + +A Sbjct: 74 SWEKELQRLNNEKVSYKYSTFDVVQSILSAKDDERIRGLVLNLNDFEGGDLPSLEYVGKA 133 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 IQ K + + + + Y ++ ++ I VG G+ ++ Y K L+KL Sbjct: 134 IQSFKESEKPVIAYADNYTQSQYFLASFADEIYLNPIGQVGIQGLRYENLYFKSMLEKLE 193 Query: 150 VSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 ++ + K+ PF +++P+A MQ + + +++ + +R+I + Sbjct: 194 ITPHIFRVGTYKSAVEPFLRDDMSPEARANMQKWLGGMWQNYMQTLMVNRHITANDV 250 >gi|87118926|ref|ZP_01074824.1| Peptidase S49, SppA [Marinomonas sp. MED121] gi|86165317|gb|EAQ66584.1| Peptidase S49, SppA [Marinomonas sp. MED121] Length = 359 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 69/274 (25%), Positives = 125/274 (45%), Gaps = 17/274 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDSQEL-----IERIE 58 KI R + +L+ + + + + +S +VA I + GQI Q + + I+ Sbjct: 80 KIFFRGLSFALIISVIALVMSDADIAEMDTSSNYVAVIPMEGQIGAGQPIDANVVLPLID 139 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAI---QKVKNRKPVITEVHEMAASAGYLIS 115 AL++ ++SPGGS I+ AI ++ P V ++AAS GY I+ Sbjct: 140 DAYAKPGIQALVLKMNSPGGSPVHSGIIYDAIKLKRQQYPDVPTYVVVEDLAASGGYYIA 199 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I+ + SLVGSIGV+ L K+GV + + KA PF + P +V Sbjct: 200 SAADTILVDKASLVGSIGVISAGFEATELLKKIGVERRVFTAGENKAFLDPFMPMAPASV 259 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 + Q V+D ++ F+ V E R + L G +++G++A ++GL+D + ++ Sbjct: 260 KKWQAVLDETHKQFISAVKEGRGERLTDSPDLFSGAVFSGSQAVELGLVDGLSSFYQLVN 319 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 + + + K W +K+ +S Sbjct: 320 ------GEYKGLDVLYFREDKQPWEEVVKSFGVS 347 >gi|188533707|ref|YP_001907504.1| protease 4 [Erwinia tasmaniensis Et1/99] gi|188028749|emb|CAO96611.1| Protease IV [Erwinia tasmaniensis Et1/99] Length = 618 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 67/268 (25%), Positives = 111/268 (41%), Gaps = 14/268 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGS 79 +VA I G I D +E I D A++ ++SPGGS Sbjct: 319 KDANTVDGNVAVILASGAIMDGEEAPGSVGADTTALEIRSARLDPKIKAIVFRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + KPV+ + MAAS GY +S +N ++A+ +L GSIG+ Sbjct: 379 VTASETIREELAAAKDAGKPVVVSMGGMAASGGYWVSTPANYVIASPATLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + + MQ +D Y F+ LV++SRN Sbjct: 439 NTVENSLDAIGVHTDGVATSPLADVASTKALPSEVQQM-MQLSIDKGYQNFIGLVAKSRN 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + ++ G +WTG +AK GL+D +G ++ L ++ + + Sbjct: 498 KTPVEIDRIAQGHVWTGNDAKANGLVDALGDFDDAVAKAAELAKLSK-PQLSWYQDDPSL 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + +S + +P + Sbjct: 557 LDMLFNQMQVS--VHAALPATLKAYFPA 582 Score = 98.5 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 49/288 (17%), Positives = 103/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSW--SSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + I +++L +V ++F + +S D + + G + D Sbjct: 19 LNFVRECILNLFLVLLIVVAAGIWFQFHSASTAADTQKGALIVDLSGVVVDKPTVSNKMS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 ++++ I + DD+ T +++ L + GG+ + I + + Sbjct: 79 RISRQLLGAGNDPLKENSLFDIVDAIRQAKGDDNITGMVLDLRNFGGADQPSLQYIGKTL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ I E + A Y ++ +N I + V G Y K +DKL + Sbjct: 139 REFRDSGKPIFATGESYSQAQYYLASFANKIYLSPQGNVDLHGFATNSLYYKTLIDKLKI 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A V + ++ ++ +R I ++ Sbjct: 199 SSHVFRVGTYKSAVEPFLRDDMSPAARDADGRWVGELWENYLNTLAANRQITPNQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L T AK L+D + V + L K Sbjct: 259 QGVLDSLKKLGGDTAQYAKDNKLVDQLASSSLVERDLVKTFGWDKEAK 306 >gi|295690720|ref|YP_003594413.1| signal peptide peptidase SppA [Caulobacter segnis ATCC 21756] gi|295432623|gb|ADG11795.1| signal peptide peptidase SppA, 67K type [Caulobacter segnis ATCC 21756] Length = 594 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 68/288 (23%), Positives = 109/288 (37%), Gaps = 18/288 (6%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED----------------SQELIERIERI 60 L+ P +A I G I S ++ + Sbjct: 277 LIDFDDYASRNKPTPIKTGPAIAVIGAEGAIVTGTSGGGSPFSGESNVYSDDVAQAFRNA 336 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAI-FRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119 + D A++ +SSPGGS A E I KPV+ + AAS GY IS ++ Sbjct: 337 TEDKDVKAIVFRVSSPGGSDTASEQILAAMKAAKAAGKPVVVSMGTYAASGGYWISSQAD 396 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI-KSVKSSPMKAEPSPFSEVNPKAVQMM 178 IVA ++L GSIGV + L + GV + P+ Sbjct: 397 AIVAQPSTLTGSIGVYGGKFAIGDALARFGVDTKQLHVGGDYAQAFGSGDGFTPEQRAKF 456 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 +D Y F+ V+E R +P D+ ++ GR+WTG +AK++GL+D +GG + Sbjct: 457 AGWMDRIYAGFIIRVAEGRKLPADRVREIAKGRVWTGEQAKQLGLVDELGGFYQAVDKAK 516 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 AL ++K + ++ + K L +S T+ Sbjct: 517 ALAKLNGDVRLKRMDGGQSPFEALEKLLGVSETSMKTLAAAAWVLGDP 564 Score = 76.2 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 90/275 (32%), Gaps = 27/275 (9%) Query: 11 RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIR------------------GQIEDSQE 52 + + V ++ + + +P A + + G + Sbjct: 15 LLLFVVGVPFLLIVIAAGAARPAPTPTQAVLQLDLRQGLTDQAPRTPFASLGGGGDSVMS 74 Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM------ 106 +IE + R +DD A++V L G + A + + A + + H Sbjct: 75 IIETLRRAEKDDKVRAILVRLPEGGVAPAAADELRLAFKHFREVGGKPIYAHSQGLYPSG 134 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 ++ Y++ +++ S ++G+ + + K F DK GV + K +P Sbjct: 135 MVTSTYMLGASASEFWMQPDSSFQAVGISSESMFFKRFFDKYGVKADYEQRYEYKNAVNP 194 Query: 167 F--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLI 224 + S+ P + + S Y + + R + + ++ EA+ GLI Sbjct: 195 YLYSDYTPAHRESTLSWMGSVYRTALVSAAVDRKRDPLQLTRTLEDGPYSAQEAQAKGLI 254 Query: 225 DVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNY 258 D VG ++ + D+ Sbjct: 255 DKVGQVSDIQALALDKAGKGSKLIDFDDYASRNKP 289 >gi|260060602|ref|YP_003193682.1| protease IV [Robiginitalea biformata HTCC2501] gi|88784732|gb|EAR15901.1| protease IV [Robiginitalea biformata HTCC2501] Length = 584 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 61/260 (23%), Positives = 125/260 (48%), Gaps = 10/260 (3%) Query: 33 DNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAYAG 83 +A + +G+I + + E +++ D+ A+++ ++SPGGSA Sbjct: 296 TGDSRIAIVYAQGEIFYGEGGPDYIGQVRMQEVFKKVREDEDIKAVVLRINSPGGSALTS 355 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 E I+R I + + KPV+ + ++AAS GY ++ A + IV T++ GSIGV P + Sbjct: 356 EIIWREIMETRKEKPVVVSLSDVAASGGYYMAVAGDRIVTEPTTITGSIGVFATIPNISS 415 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 +K+G++ + V + M + S F + +++++ ++ +Y F++ V++ R I + Sbjct: 416 LSEKIGINAEQVGTHDMSVDYSFFEPMGDDFREVVREGIEDTYETFLQRVADGRGISVAQ 475 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L+ GR+W+G +A ++GL D +GG E + L + K+ + Sbjct: 476 ADSLAQGRVWSGTDAVRLGLADALGGMPEALDTAAELAGV-ESYRTLSLPKYKSGLERLM 534 Query: 264 KNLSISSLLEDTIPLMKQTK 283 ++L + L + Sbjct: 535 EDLGGAGEAAGQAALTDRLG 554 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 95/275 (34%), Gaps = 27/275 (9%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------------- 47 +L + ++ + + V V V ++ I Sbjct: 11 ILGTLVALGIVFVMFLIFVSLAGSEEPVRIPDDSVLELSFPYPINEYSGNDPGDPLAGLF 70 Query: 48 ---EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH 104 + E+ + I + DD + + + AI +A+ + + + Sbjct: 71 DASQGLDEITKAIRLAAGDDRISGISLGGPYLLAGITQTRAIRQALAEFRETGKFVYAYG 130 Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 + Y +S ++ + V G+ + Y K F +K G+ ++ V+ K+ Sbjct: 131 DFYMQKDYYLSSVADSVFLNPVGTVDFKGLAAEVLYFKEFQEKTGLQMEVVRHGKYKSAV 190 Query: 165 SPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGAEAKKV 221 PF ++ + +++++ S + +S SR + D+ ++DG + T A Sbjct: 191 EPFLSDSMSDDNREQLRELLASIWSSIREEISTSRGLSVDELDRIADGLLARTPERAVTT 250 Query: 222 GLIDVV---GGQEEVWQSLYALGVDQSIRKIKDWN 253 GL+D + G +++ G + KI Sbjct: 251 GLVDALIYRGEYDDLLARASGRG--EDDPKIVTLQ 283 >gi|71275280|ref|ZP_00651567.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Xylella fastidiosa Dixon] gi|71900134|ref|ZP_00682275.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Xylella fastidiosa Ann-1] gi|170731283|ref|YP_001776716.1| protease IV [Xylella fastidiosa M12] gi|71164089|gb|EAO13804.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Xylella fastidiosa Dixon] gi|71730083|gb|EAO32173.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Xylella fastidiosa Ann-1] gi|167966076|gb|ACA13086.1| protease IV [Xylella fastidiosa M12] Length = 633 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 123/267 (46%), Gaps = 11/267 (4%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVS 72 + S S +A + G+I + + + +D+ A+++ Sbjct: 320 LSLLDAQSVPLGTSSQIAVVVAAGEIKGGDQPAGYIGGESTSMLLRKARDEDAVKAVVLR 379 Query: 73 LSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 ++SPGG +A E I R + ++ KPV+ + +MAAS GY IS ++ I A +++ GS Sbjct: 380 VNSPGGEVFASEQIRREVVALRKVGKPVVVSMGDMAASGGYWISMDADRIYADPSTISGS 439 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IG+ P + LDK+GV V ++ ++P+ Q+ Q+V+D Y F Sbjct: 440 IGIFGLVPNITRTLDKVGVHTDGVGTTRFAGALDITRALDPQVGQIFQNVIDKGYADFTT 499 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIK 250 V+++R+ + ++ GR+W+GA+AK+ GL+D +GG E + ++ Sbjct: 500 KVAQARHRSVKEIDSIARGRVWSGAQAKERGLVDELGGVREAITDAAKRAKLGEGHYSVR 559 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIP 277 + + + + N+ + + + Sbjct: 560 YVDKAVSPFMQFIINMMSTRIGNWALG 586 Score = 66.2 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 41/251 (16%), Positives = 89/251 (35%), Gaps = 16/251 (6%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAAS 109 ++LI IE ++D +++ L S YA + A+Q +K+ + E Sbjct: 99 RDLIRVIEAAAKDKKVERVLLDLDKLQPSGYASLREVVAALQNLKDSGKQLVAFSESMTQ 158 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPF- 167 + YL++ ++ I V G+ Y + L +KLGV + + K+ PF Sbjct: 159 SQYLLAAQADEIYLDPMGSVLLEGLAHYRQYFRKGLQEKLGVDVHLFRVGEYKSAAEPFV 218 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW--------TGAEA 218 + A + ++ + ++ ++++R + + + A Sbjct: 219 LDAASADAKEADLFWMNDIWQRYLADIAKARKLDSAHLNTIVERLPQDIAANHGDLAKYA 278 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIR----KIKDWNPPKNYWFCDLKNLSISSLLED 274 L+D + +E+V Q + GV + D+ + L SS + Sbjct: 279 LAQKLVDGLKTREQVNQLMIQRGVADKKADGGFRNVDFGTYLSLLDAQSVPLGTSSQIAV 338 Query: 275 TIPLMKQTKVQ 285 + + Sbjct: 339 VVAAGEIKGGD 349 >gi|39995926|ref|NP_951877.1| signal peptide peptidase SppA, 36K type [Geobacter sulfurreducens PCA] gi|39982690|gb|AAR34150.1| signal peptide peptidase SppA, 36K type [Geobacter sulfurreducens PCA] gi|298504941|gb|ADI83664.1| signal peptide peptidase SppA, 36K type [Geobacter sulfurreducens KN400] Length = 321 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 76/282 (26%), Positives = 124/282 (43%), Gaps = 20/282 (7%) Query: 31 VEDNSPHVARIAIRGQIEDSQE---------------LIERIERISRDDSATALIVSLSS 75 + + + + I G I D + + E + + RD LI+ ++S Sbjct: 40 EGEGTKKILIVDISGAIGDQAKGGGLLSRGTPSTVSLVREVLLKAERDPKVAGLILRINS 99 Query: 76 PGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 PGG+ A + I + K R+ PV + + AS GY ++ A++ I A T+L GSIG Sbjct: 100 PGGTVTASDIIRHDLLAFKERRNLPVSACIMGIGASGGYYVATAADGITAHPTALTGSIG 159 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 VL V+ L K+GV K++KS K SPF P+ +++Q V+D + FV +V Sbjct: 160 VLLMTFNVEGLLGKVGVEEKTIKSGGKKDLLSPFRRATPEEERLVQGVIDQFHGRFVDVV 219 Query: 194 SESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 L L+DGRI++ A+A GLID +G ++V SL D ++ Sbjct: 220 QARPGNRLSRHDLLTLADGRIFSAADALAAGLIDRIGYLDDVIASLRDRIGDPDA-RVVT 278 Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 + P +Y + + D + T +W P Sbjct: 279 YFRPGSYQGSIYAESAAEPSMADLLGGFDMTGGGQFMYLWRP 320 >gi|325478882|gb|EGC81992.1| signal peptide peptidase SppA, 36K type [Anaerococcus prevotii ACS-065-V-Col13] Length = 327 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 67/256 (26%), Positives = 125/256 (48%), Gaps = 6/256 (2%) Query: 30 HVEDNSPHVARIAIRGQIEDSQ--EL-IERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 ++ + + + G I+ + + +E +++ D +I+ ++SPGGS YA E I Sbjct: 55 KGTNSKEKIKIVDVDGVIQSNDANDFAVEELKKAKEDPLVKGVILRVNSPGGSVYASEKI 114 Query: 87 FRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+ + + KPV T + EMAAS GY IS ++ I A+ + GSIGV+ Q ++ Sbjct: 115 ANQIKALKEADKPVYTVMEEMAASGGYYISAPTDRIYASNETWTGSIGVIIQSKSLQGLF 174 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 +K G+ +++ + MK S ++N Q +VDS++ FV++V+E R + + Sbjct: 175 EKYGIKEQNITTGKMKDAGSVGRDMNDDEKAYFQGLVDSAFDRFVKIVAEGRGLSEREVR 234 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK--DWNPPKNYWFCDL 263 ++DGR++ G++A +GL+D +G + + + I+ D N F Sbjct: 235 KIADGRVYDGSQALNIGLVDKIGDLDLAISEMTSENGLNDPMVIENNDVMSSFNSLFSKA 294 Query: 264 KNLSISSLLEDTIPLM 279 +L S + M Sbjct: 295 MDLKKESSDLAILDKM 310 >gi|325205076|gb|ADZ00530.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis M01-240355] Length = 328 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57 K I L LV L F N+PH A + + G+I + ++ ++++ Sbjct: 45 KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114 E ++ A A+I+ +SPGGS F I+++K + P V +M AS Y I Sbjct: 105 EAAYKNPQAKAIIIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I A +S++GSIGV+ ++K+GV + + K PFS P+ Sbjct: 165 AAAADKIYADPSSIIGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++ ++++ + F++ V R + + GR++TGA+A KVGL+D +G Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGDRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280 V + + + D+ P ++ + + + + + ++ Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328 >gi|313669287|ref|YP_004049571.1| protease [Neisseria lactamica ST-640] gi|313006749|emb|CBN88219.1| putative protease [Neisseria lactamica 020-06] Length = 328 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 67/283 (23%), Positives = 124/283 (43%), Gaps = 13/283 (4%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57 K I L LV L F N+PH A + + G+I + ++ ++++ Sbjct: 45 KNIWRAVSTLILVALIAGIFQKDESALQLVGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114 E ++ A A+++ +SPGGS F I+++K + P V +M AS Y I Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I A +S+VGSIGV+ ++K+GV + + K PFS P+ Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++ ++++ + F++ V R + + GR++TGA+A+KVGL+D +G Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADAQKVGLVDGLGNIYS 284 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 V + + + D+ + L+ Sbjct: 285 VARDVVKAPDLVDYTRQDDFGTLLGRRLGAELKAGVREALQAV 327 >gi|294140831|ref|YP_003556809.1| signal peptide peptidase SppA, 67K type [Shewanella violacea DSS12] gi|293327300|dbj|BAJ02031.1| signal peptide peptidase SppA, 67K type [Shewanella violacea DSS12] Length = 613 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 64/252 (25%), Positives = 114/252 (45%), Gaps = 12/252 (4%) Query: 35 SPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 V I +G I + + + DD+ A+++ + SPGGSA+A E Sbjct: 324 DDTVGIIVAKGTILNGNQPAGQIGGESTSLLLRKARFDDNVKAVVLRVDSPGGSAFASEQ 383 Query: 86 IFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I + + +K KPV+ + AAS GY IS +++ I A T+L GSIG+ + Sbjct: 384 IRQEVLALKTAGKPVVVSMGSYAASGGYWISASADYIYATPTTLTGSIGIFGMITTFEDS 443 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L LG+ V +S S + P ++Q ++ YH F+ LV+ RN+ ++ Sbjct: 444 LSSLGIHTDGVATSEWAG-ISVAKGLTPAIKSVIQRHIERGYHDFISLVATERNMSLEEV 502 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFCDL 263 ++ GR+W+G +A +GLID +G ++ + + +I + +F Sbjct: 503 DNIAQGRVWSGRKALDLGLIDELGDLDDAVAKAADMAGLEDFDSQIIEHELTPQEFFIQE 562 Query: 264 KNLSISSLLEDT 275 S++ L + Sbjct: 563 MFSSVAVYLPQS 574 >gi|127512869|ref|YP_001094066.1| signal peptide peptidase SppA, 67K type [Shewanella loihica PV-4] gi|126638164|gb|ABO23807.1| signal peptide peptidase SppA, 67K type [Shewanella loihica PV-4] Length = 613 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 64/266 (24%), Positives = 121/266 (45%), Gaps = 13/266 (4%) Query: 36 PHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 V I +G I + + + DD A+++ + SPGGSA+A E I Sbjct: 325 DAVGIIVAKGNILNGHQAAGQIGGESTSALLRKARFDDKVKAVVLRVDSPGGSAFASEQI 384 Query: 87 FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + + +K KPV+ + AAS GY IS +++ I A T+L GSIG+ + L Sbjct: 385 RQEVLALKAANKPVVVSMGTYAASGGYWISASADYIYATPTTLTGSIGIFGMMTTFEDSL 444 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 +LG+ V +S S ++ + +++Q ++ Y F+ LVSE R + ++ Sbjct: 445 AELGIHTDGVSTSGW-TAFSSTQGISDELKEIIQRHIERGYQDFISLVSEERGMKPEEVD 503 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPKNYWFCDL 263 ++ GR+W+G A ++GL+D +G E+ L + + I+ P+ + + Sbjct: 504 KIAQGRVWSGKRALELGLVDELGDLEQAVTKAAELAKLEKFDTKLIEQELSPQEQFIQQM 563 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289 ++S + + ++ G + Sbjct: 564 FAQAVSYMPQSLSQSSLIEQLLGEVS 589 Score = 92.4 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 88/277 (31%), Gaps = 36/277 (12%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51 +K+ + L V + + + G + + + Sbjct: 23 RKVILNLFFFGFIALLFVILAGEESPTVEEGSALVLDLSGNVVEQKRQVDPIEAAMKSGK 82 Query: 52 -----------ELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRKPV 99 +L+ I+ + D +AL++ + + ++I A+ + K Sbjct: 83 GGQSDGEILLADLLNAIDNAASDKRISALVLDIGHLRWTGISKLQSIGDALTRFKASGKP 142 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 I + Y ++ ++ I V G+ Y K LDKL + + Sbjct: 143 IIAMGNWYGQNQYFLASFADTIYLNPQGSVEIEGLSRYRQYFKSALDKLKIKAHVFRVGT 202 Query: 160 MKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL--------VLSD 209 K+ PF +++ A ++++ + F VSE+R I D + L+ Sbjct: 203 FKSAVEPFMRDDMSEAAKSANRELLQDIWDSFEATVSENRGIKQDDLMLSAERYLTELNK 262 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + A +G +D + E+ + + Sbjct: 263 ANGRSSEMAINLGWVDKLASAEQFRLDMVERVGEAKE 299 >gi|325135353|gb|EGC57974.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis M0579] gi|325203104|gb|ADY98558.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis M01-240149] gi|325208973|gb|ADZ04425.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis NZ-05/33] Length = 328 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57 K I L LV L F N+PH A + + G+I + ++ ++++ Sbjct: 45 KNIWRAVSTLILVALIAGIFQKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114 E ++ A A+I+ +SPGGS F I+++K + P V +M AS Y I Sbjct: 105 EAAYKNPQAKAIIIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I A +S++GSIGV+ ++K+GV + + K PFS P+ Sbjct: 165 AAAADKIYADPSSIIGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++ ++++ + F++ V R + + GR++TGA+A KVGL+D +G Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGDRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280 V + + + D+ P ++ + + + + + ++ Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR 328 >gi|328873642|gb|EGG22009.1| hypothetical protein DFA_01898 [Dictyostelium fasciculatum] Length = 650 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 63/272 (23%), Positives = 108/272 (39%), Gaps = 23/272 (8%) Query: 27 WSSHVEDNSPHVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVS 72 + + + A I + G I S+ + + + D + A+++ Sbjct: 301 PHPYSQKSKHQFALINLEGAIYRGQSTDPMHGGPSIGSETVSLALRAATLDKNIKAIVLV 360 Query: 73 LSSPGGSAYAGEAIFRAIQ-KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 ++SPGGS A + I I+ K K V+ + + AAS GY I+C ++ IVA ++ GS Sbjct: 361 VNSPGGSYIASDLIHHEIELAKKAGKKVVVHMGQFAASGGYFIACNADRIVALPGTITGS 420 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVK--------SSPMKAEPSPFSEVNPKAVQMMQDVVD 183 IGVL KP +K+GV+ + + S N M D +D Sbjct: 421 IGVLAGKFNTKPMWEKIGVTYDMINLNNNDKHGDNDNSTFYSALHPYNKVQRDAMNDFLD 480 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 Y F V+ R + + ++ GR+WTG +A L+D +G + L Sbjct: 481 YIYGDFTSKVAAGRTLTAAQVEDVARGRVWTGNQALDRKLVDKIGSLNDAINEAKTLCGL 540 Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 + K++ PK L + E+ Sbjct: 541 KETDKLQIVEFPKESLLKKLLSSGSPYNSEEA 572 Score = 74.3 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 79/205 (38%), Gaps = 8/205 (3%) Query: 52 ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEM--- 106 ++I I S D ALI S + + +AI + + K + Sbjct: 83 DIINYINHASGDAKVKALICRLSDKAHLSLAMIQELRQAILNFRAKGKHTVVYSESFGEL 142 Query: 107 -AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 + Y ++ A N I + VG + ++K LDKLG++ + K K+ Sbjct: 143 SNSIGSYYLATAFNEIYIPQCGAVGLVSFSSDQSFIKKTLDKLGITAEFFKRKEYKSAAD 202 Query: 166 P--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 P ++ + + ++ + + +++ RN+ D+ L + ++ +A ++ L Sbjct: 203 PLTEEKLTDSNRESLTALLGDILNQMYQGIAKERNLGMDQLLNIISNGPYSSNKAVELNL 262 Query: 224 IDVVGGQEEVWQSLYALGVDQSIRK 248 ++ E ++ L + +K Sbjct: 263 VNGTKYLNETYEHLKKKMEEDHKKK 287 >gi|262068058|ref|ZP_06027670.1| protease IV [Fusobacterium periodonticum ATCC 33693] gi|291378237|gb|EFE85755.1| protease IV [Fusobacterium periodonticum ATCC 33693] Length = 551 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 55/237 (23%), Positives = 113/237 (47%), Gaps = 11/237 (4%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70 ++ + +A I + G+I + ++E+++ + + L+ Sbjct: 267 FVEYISAYKRKKNKSKNTIAVINLEGEIDIRESRETVINYDNVVEKLDALEDIKNLKGLV 326 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + ++SPGGSA E I++ ++K+ P+ + ++ AS GY I+ + A+ +L G Sbjct: 327 LRINSPGGSALESEKIYQKLKKL--EIPIYISMGDLCASGGYYIATVGKKLFASPVTLTG 384 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ YP +DKL V+++ FS+++ ++ + + ++ Y F Sbjct: 385 SIGVVILYPEFSEAIDKLKVNMEGFSKGKGFDIFDVFSKLSEESKEKIVYSMNEVYSEFK 444 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 V E+RNI + ++ GR+W G++AK+ GL+D +G + SL + + Sbjct: 445 AHVMEARNINEEDLEKIAGGRVWLGSQAKENGLVDELGTLNDCIDSLAKELELKDFK 501 Score = 69.6 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 58/283 (20%), Positives = 111/283 (39%), Gaps = 16/283 (5%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDS 65 +K K + V +SL + V F+ VED V+ I+I + +++ +E + D Sbjct: 30 RKFKNKDV-ISLKGVKTVVFNIGDLVEDYM--VSAISINKAL-SHDIVLKALENLVDDKK 85 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA- 124 +I+ + S E I +K+ K +I + + A I + Sbjct: 86 IEKIIIDVDEVDLSRVHIEEIKEIFKKLSVDKEIIAIGTTFDEYSYQIALLADKIYMLNT 145 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVV 182 + S + G ++ PY K L LGV++ ++ K E ++ + + + ++ Sbjct: 146 KQSCLYFRGYEYKEPYFKNILATLGVTVNTLHIGDYKVAGESFSHDKMTEEKKESLMNIK 205 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG--AEAKKVGLIDVVGGQEEVWQSLYAL 240 ++ + F+ LV E R D T + G + +AK++GLID V EE + Sbjct: 206 ETLFQNFINLVKEKRK--VDITNEILSGDLIFANSEKAKELGLIDGVSTYEE-----IGV 258 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 D+ ++ KN LE I + + + Sbjct: 259 DYDEDTVDFVEYISAYKRKKNKSKNTIAVINLEGEIDIRESRE 301 >gi|325283414|ref|YP_004255955.1| peptidase S49 [Deinococcus proteolyticus MRP] gi|324315223|gb|ADY26338.1| peptidase S49 [Deinococcus proteolyticus MRP] Length = 534 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 108/259 (41%), Gaps = 22/259 (8%) Query: 21 TVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQELIERIERIS 61 V+ + VA +++ G I S ++ + Sbjct: 244 AVLNLLLPVRASSKAGRVAVVSVEGNIVTGPSRHNPLPLPLTGGPSAGSDTVVAALRHAK 303 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 D + A+++ ++S GGSA A + I+R +Q + KPV+ + AAS GY + A++ + Sbjct: 304 EDRTTAAIVLYVNSGGGSALASDLIWREVQ--TSEKPVVAVMGAFAASGGYYVLAAADRV 361 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 +A+ S+ GSIGV+ P + F + G++ + + + + ++ Sbjct: 362 IASPYSMTGSIGVVAGRPITEEFNRRHGLNPEQLGR-EEALMFHSSHPLTERQRDYLRRA 420 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 + +Y FV V++ R + ++ L GRIW+GA+A + GL+D +G Q L Sbjct: 421 IAETYARFVDRVAQGRGLSTEQVDELGRGRIWSGADALERGLVDELGDLHTAVQRAKELT 480 Query: 242 VDQSIRKIKDWNPPKNYWF 260 + + P Sbjct: 481 GLPYSAPVWNAGPKNRLPL 499 Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 93/186 (50%), Gaps = 3/186 (1%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + L ER++R++R + ++V SA A AI + ++ K V+ + ++ + Sbjct: 51 EALEERLDRLARAEWLHGVLVRFGELKLSAAAARAIQGMLSRLAAEKRVVAYLPQVNMTT 110 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169 S A + +VA E++ +G G + Y+ FL K G+ ++++ K+ +PFS+ Sbjct: 111 LLAASGA-SELVAPESAEMGLHGFGLEQLYLGDFLKKHGIGFENLRIREYKSALTPFSDS 169 Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 ++ + +QD +DS + +V+ V++ R + + +G + +A + G++ V Sbjct: 170 EMDGANREQLQDYLDSCENAWVQDVAQGRGLSEAQVRGWIEGGVTGARQALEAGILTGVA 229 Query: 229 GQEEVW 234 ++E+ Sbjct: 230 YEDELL 235 >gi|59802274|ref|YP_208986.1| putative protease [Neisseria gonorrhoeae FA 1090] gi|194099771|ref|YP_002002906.1| putative protease [Neisseria gonorrhoeae NCCP11945] gi|239999952|ref|ZP_04719876.1| putative protease [Neisseria gonorrhoeae 35/02] gi|240017669|ref|ZP_04724209.1| putative protease [Neisseria gonorrhoeae FA6140] gi|240081852|ref|ZP_04726395.1| putative protease [Neisseria gonorrhoeae FA19] gi|240114129|ref|ZP_04728619.1| putative protease [Neisseria gonorrhoeae MS11] gi|240116769|ref|ZP_04730831.1| putative protease [Neisseria gonorrhoeae PID18] gi|240118995|ref|ZP_04733057.1| putative protease [Neisseria gonorrhoeae PID1] gi|240122467|ref|ZP_04735423.1| putative protease [Neisseria gonorrhoeae PID332] gi|240126684|ref|ZP_04739570.1| putative protease [Neisseria gonorrhoeae SK-92-679] gi|240127179|ref|ZP_04739840.1| putative protease [Neisseria gonorrhoeae SK-93-1035] gi|254493478|ref|ZP_05106649.1| protease [Neisseria gonorrhoeae 1291] gi|260441561|ref|ZP_05795377.1| putative protease [Neisseria gonorrhoeae DGI2] gi|268595758|ref|ZP_06129925.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268597949|ref|ZP_06132116.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268600201|ref|ZP_06134368.1| protease [Neisseria gonorrhoeae MS11] gi|268602442|ref|ZP_06136609.1| protease [Neisseria gonorrhoeae PID18] gi|268604710|ref|ZP_06138877.1| protease [Neisseria gonorrhoeae PID1] gi|268681058|ref|ZP_06147920.1| protease [Neisseria gonorrhoeae PID332] gi|268685263|ref|ZP_06152125.1| protease [Neisseria gonorrhoeae SK-92-679] gi|268685537|ref|ZP_06152399.1| protease [Neisseria gonorrhoeae SK-93-1035] gi|291044926|ref|ZP_06570635.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293398003|ref|ZP_06642209.1| protease IV [Neisseria gonorrhoeae F62] gi|59719169|gb|AAW90574.1| putative protease [Neisseria gonorrhoeae FA 1090] gi|193935061|gb|ACF30885.1| putative protease [Neisseria gonorrhoeae NCCP11945] gi|226512518|gb|EEH61863.1| protease [Neisseria gonorrhoeae 1291] gi|268549147|gb|EEZ44565.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268551737|gb|EEZ46756.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268584332|gb|EEZ49008.1| protease [Neisseria gonorrhoeae MS11] gi|268586573|gb|EEZ51249.1| protease [Neisseria gonorrhoeae PID18] gi|268588841|gb|EEZ53517.1| protease [Neisseria gonorrhoeae PID1] gi|268621342|gb|EEZ53742.1| protease [Neisseria gonorrhoeae PID332] gi|268625547|gb|EEZ57947.1| protease [Neisseria gonorrhoeae SK-92-679] gi|268625821|gb|EEZ58221.1| protease [Neisseria gonorrhoeae SK-93-1035] gi|291011820|gb|EFE03816.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291611949|gb|EFF41018.1| protease IV [Neisseria gonorrhoeae F62] gi|317165248|gb|ADV08789.1| putative protease [Neisseria gonorrhoeae TCDC-NG08107] Length = 328 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 21/290 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57 K I L LV L F N+PH A + + G+I + ++ ++++ Sbjct: 45 KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGKIGNGVEDQVKKLKDGM 104 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114 E ++ A A+++ +SPGGS F I+++K + P V +M AS Y I Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I A +S+VGSIGV+ ++K+GV + + K PFS P+ Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++ ++++ + F++ V R + + GR++TGA+A KVGL+D +G Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280 V + + + D+ P ++ + + + + + ++ Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVSEALQAVR 328 >gi|238020513|ref|ZP_04600939.1| hypothetical protein GCWU000324_00395 [Kingella oralis ATCC 51147] gi|237867493|gb|EEP68499.1| hypothetical protein GCWU000324_00395 [Kingella oralis ATCC 51147] Length = 333 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 73/303 (24%), Positives = 130/303 (42%), Gaps = 35/303 (11%) Query: 6 KKIKTRYVMLSLVTLTVVY---------FSWSSHVEDNSPHVARIAIRGQIEDSQE---- 52 + I +L + + S PH A + ++G I + E Sbjct: 42 RNIWRGIAVLVFLAIVAGSRTGNGNHPNVSAGKFTNMQKPHTAVVNLKGVIGGNDEHDQV 101 Query: 53 --LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMA 107 L E +E ++++ A+++ +SPGGS F I+++ PV ++ Sbjct: 102 KILREGMEAAYKNNNVKAILLRANSPGGSPVVSNIAFEEIRRMKREHADIPVYVVAEDVC 161 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 AS Y I+ A++ I A +SL+GSIGV+ V + K+GV + + K PF Sbjct: 162 ASGCYYIAAAADKIYADPSSLMGSIGVIGSSFDVTELMQKIGVKRRVRIAGDNKGMGDPF 221 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLID 225 + +P+ + Q ++D + F++ V E RN ++ L GR++TG EAKK GL+D Sbjct: 222 TPESPEQQAIFQQMLDQVHAEFIKSVREGRNGKLNEKAYPDLFSGRVFTGIEAKKAGLVD 281 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 +G V + + + D+ P N ++SLL+ + Q K++ Sbjct: 282 DLGNIYSVARDVVK------APDLVDYTPENN---------DLASLLQRGLGARVQLKLE 326 Query: 286 GLW 288 Sbjct: 327 EWL 329 >gi|219872141|ref|YP_002476516.1| protease IV, signal peptide peptidase [Haemophilus parasuis SH0165] gi|219692345|gb|ACL33568.1| protease IV, signal peptide peptidase [Haemophilus parasuis SH0165] Length = 621 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 66/269 (24%), Positives = 128/269 (47%), Gaps = 13/269 (4%) Query: 18 VTLTVVYFSWSSHVED-NSPHVARIAIRGQIE---------DSQELIERIERISRDDSAT 67 + S S +A + + G I S +++ + + DD Sbjct: 306 IDFFDYSLSLSDRFNVVGKDKIAIVNVEGAIVLGESDDEVAGSDTIVKLLRKAREDDDVR 365 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAET 126 +++ ++SPGGSA A E I + ++ ++ KPV+ + MAAS GY I+ S+ I+A+ T Sbjct: 366 GVVLRINSPGGSAMASELIRQEVEDLQQAGKPVVASMGGMAASGGYWIAATSDKIIASPT 425 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 +L GSIG+ + KLGV+ V +SP + + ++ + +++Q +++ Y Sbjct: 426 TLTGSIGIFALAVSFEKTAKKLGVNEDGVSTSPFAQQTAL-KPLSKEQSELIQISIENGY 484 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 F+ LVS+ R + ++ G++W G A + GL+D +G ++ + +L L ++ Sbjct: 485 GRFLELVSKGRKMSKGDVDKVAQGQVWLGESAFEKGLVDELGDFDDAYHALTILINEKRK 544 Query: 247 RKIK-DWNPPKNYWFCDLKNLSISSLLED 274 K + + W D + IS ++ D Sbjct: 545 AKGETEIERFSTQWLIDESDDLISQVMRD 573 >gi|34540445|ref|NP_904924.1| signal peptide peptidase SppA, 67K type [Porphyromonas gingivalis W83] gi|34396758|gb|AAQ65823.1| signal peptide peptidase SppA, 67K type [Porphyromonas gingivalis W83] Length = 595 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 74/281 (26%), Positives = 140/281 (49%), Gaps = 16/281 (5%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------------SQELIERIERI 60 L V+L+ V + + +A + G+I + +QEL + I+ Sbjct: 286 LRFVSLSQV-LANGPMNKTKGSRIAVLFAEGEITEEIIKKPFDTDGSSITQELAKEIKAA 344 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + DD A+++ ++SPGGSA+ E I++ + +K +KP++ + ++AAS GY I+CA+N Sbjct: 345 ADDDDIKAVVLRVNSPGGSAFTSEQIWKQVADLKAKKPIVVSMGDVAASGGYYIACAANS 404 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 IVA T+L GSIG+ +P K+GV++ V++S + F+ + + ++Q Sbjct: 405 IVAEHTTLTGSIGIFGMFPNFAGVAKKIGVNMDVVQTSKYADLGNTFAPMTVEDRALIQR 464 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 ++ Y F+ VSE RN + ++ GR+W G +A +GL+D +GG + + L Sbjct: 465 YIEQGYDLFLTRVSEGRNRTKAQIDSIAQGRVWLGDKALALGLVDELGGLDTAIKRAAKL 524 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 I ++ K +F +L + S + + + + Sbjct: 525 AQLGGNYSI-EYGKTKRNFFEELLSSSAADMKSAILSTILS 564 Score = 94.3 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 85/201 (42%), Gaps = 4/201 (1%) Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 +E I + + + T + + L + + E + RA+Q K + + GY Sbjct: 87 VEAIGQAKNNPNITGIFLDLDNLSVGMASAEELRRALQDFKMSGKFVVSYADRYTQKGYY 146 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVN 171 +S ++ + ++G IG+ Q + K LDK GV ++ K KA PF ++ Sbjct: 147 LSSIADKLYLNPKGMLGLIGIATQTMFYKDALDKFGVKMEIFKVGTYKAAVEPFMLNRMS 206 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIW-TGAEAKKVGLIDVVGG 229 + + ++ + ++ESR D + +D G ++ +A ++ L+D + Sbjct: 207 DANREQITTYINGLWDKITSDIAESRKTAMDSVKMFADKGEMFGLAEKAVEMKLVDELAY 266 Query: 230 QEEVWQSLYALGVDQSIRKIK 250 + +V + L + +++ Sbjct: 267 RTDVEKELKKMSQRGEKDELR 287 >gi|86606131|ref|YP_474894.1| signal peptide peptidase SppA, 36K type [Synechococcus sp. JA-3-3Ab] gi|86554673|gb|ABC99631.1| signal peptide peptidase SppA, 36K type [Synechococcus sp. JA-3-3Ab] Length = 346 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 69/330 (20%), Positives = 139/330 (42%), Gaps = 44/330 (13%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNS---------PHVARIAIRGQIEDSQ----- 51 + + +++ L+ + ++ + + I G I + Sbjct: 9 RLLAASLLVVCLIAAVIGGTRPAAESVRGGVGLEAPRGANRIEVVTIEGTIGGPRGSTLV 68 Query: 52 ----ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEM 106 ++++ D + A+++ ++SPGG+ + + ++RA+ ++ KPVI + ++ Sbjct: 69 GLPTSPLDQLREAVEDRAVKAVLLRINSPGGAVGSSQELYRAVTALREAGKPVIAVMEDV 128 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 AAS GY ++ A++ I A +L GSIGV+ LD G+ ++ K+ K SP Sbjct: 129 AASGGYYVASAADKIYANPGTLTGSIGVIISGLNFGKLLDNYGIEPQTFKTGEYKDILSP 188 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK---------------------TL 205 F P+ +++Q++V+ + FVR V+ R DK Sbjct: 189 FRAATPQEQRLLQELVEDTLDQFVRDVARGRQRLPDKGAEKVLDAEMIARRQSLDEARVR 248 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD--- 262 L+DGRI+TGA+A ++GL+D +GG E + L + D S+ +P + Sbjct: 249 QLADGRIFTGAQAVELGLVDALGGYAEAVEDLRRMTGDPSLSPATARDPFQRALQRLLSQ 308 Query: 263 -LKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 L + + + + + +W Sbjct: 309 GLPPQGQNLWPARLLGSHEVAGIPEVPLLW 338 >gi|282896623|ref|ZP_06304638.1| Peptidase S49, SppA [Raphidiopsis brookii D9] gi|281198493|gb|EFA73379.1| Peptidase S49, SppA [Raphidiopsis brookii D9] Length = 273 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 64/260 (24%), Positives = 126/260 (48%), Gaps = 5/260 (1%) Query: 36 PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 +ARI I G I S + ++E I+ + AL++ + SPGG+ + I+ A++++ Sbjct: 11 KQIARIEITGAIASSTRKRVLEAIKTVEE-RKFPALLLRIDSPGGTVGDSQEIYGALKEL 69 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + ++ ++AS G I + I+A ++ GSIGV+ + ++ L+K+GVS K Sbjct: 70 GKKTKIVASFGNISASGGVYIGMGAKHIMANPGTITGSIGVILRGNNLERLLEKVGVSFK 129 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 +KS P K S E+ ++Q+++D SY F++ V+++R +P + +DGRI+ Sbjct: 130 VIKSGPYKDILSFDRELTQPEENILQELIDVSYQQFIQTVAQARALPIETVKTFADGRIF 189 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI--SSL 271 TG +A +G++D +G +E+ + L + + + S S Sbjct: 190 TGEQALNLGVVDRLGTEEDARRWTAELVGLDPQKTPCYTLEERKPLLSRVLPGSRYPKSS 249 Query: 272 LEDTIPLMKQTKVQGLWAVW 291 + I ++ +W Sbjct: 250 IRSGIDWLEFEMSTSGLPLW 269 >gi|30249027|ref|NP_841097.1| U7 family peptidase [Nitrosomonas europaea ATCC 19718] gi|30138644|emb|CAD84935.1| Peptidase family U7 [Nitrosomonas europaea ATCC 19718] Length = 317 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 55/249 (22%), Positives = 114/249 (45%), Gaps = 11/249 (4%) Query: 8 IKTRYVMLSLVTLTVV---YFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIER 59 I R + S + + + + + H A + +RG+I +++ + +++ Sbjct: 36 IFFRLLTFSYLFVLLFWGLGWLDTEVAGGTGKHTALVDLRGEIAPDGLNNAENINNGLKK 95 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISC 116 D + +I+ ++SPGGS +I I+++ P+ V ++ AS GY ++ Sbjct: 96 AFEDRNTAGVILRINSPGGSPVQAGSINDEIRRLRIRYPDIPLYAVVEDICASGGYYVAV 155 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 A++ I + S++GSIGVL L+KLGV + + + K PFS +P + Sbjct: 156 AADKIFVDKASVMGSIGVLMDGFGFTGTLEKLGVERRLLTAGENKGFLDPFSPSDPAQRE 215 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 + ++ + F+++V + R + G +WTGA++ ++GL D +G + V + Sbjct: 216 HAKKILAEIHQQFIQVVQDGRGDRLKDNPEVFSGMVWTGAKSVELGLADALGNADYVARE 275 Query: 237 LYALGVDQS 245 + Sbjct: 276 VIQAERIVD 284 >gi|213417443|ref|ZP_03350585.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 543 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 108/226 (47%), Gaps = 11/226 (4%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D +A I G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 379 VNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ L +GV V +SP+ S ++P+ QMMQ ++ Y F+ LV+++R Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAD-ISMTKALSPEVQQMMQLSIEYGYKRFITLVADARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 ++ ++ G +WTG +AK GL+D +G ++ L + Sbjct: 498 RTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKLK 543 Score = 99.3 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S+ E + + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90 +++ I + D + T +++ L + G+ I +A+ Sbjct: 79 ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ VS +R I + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + DG T A L+D + +V ++L Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300 >gi|188994544|ref|YP_001928796.1| signal peptide peptidase SppA 67K type [Porphyromonas gingivalis ATCC 33277] gi|188594224|dbj|BAG33199.1| signal peptide peptidase SppA 67K type [Porphyromonas gingivalis ATCC 33277] Length = 595 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 74/281 (26%), Positives = 141/281 (50%), Gaps = 16/281 (5%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------------SQELIERIERI 60 L V+L+ V + + +A + G+I + +QEL + I+ Sbjct: 286 LRFVSLSQV-LANGPMNKTKGSRIAVLFAEGEITEEIIKKPFDTDGSSITQELAKEIKAA 344 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + DD A+++ ++SPGGSA+ E I++ + +K +KP++ + ++AAS GY I+CA+N Sbjct: 345 ADDDDIKAVVLRVNSPGGSAFTSEQIWKQVADLKAKKPIVVSMGDVAASGGYYIACAANS 404 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 IVA T+L GSIG+ +P K+GV++ V++S + F+ + + ++Q Sbjct: 405 IVAEHTTLTGSIGIFGMFPNFAGVAKKIGVNMDVVQTSKYADLGNTFAPMTVEDRALIQR 464 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 ++ Y F+ VSE RN + ++ GR+W G +A +GL+D +GG + + L Sbjct: 465 YIEQGYDLFLTRVSEGRNRTKAQIDSIAQGRVWLGDKALALGLVDELGGLDTAIKRAAKL 524 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 I ++ K +F +L + S + + + ++ Sbjct: 525 AQLGGNYSI-EYGKTKRNFFEELLSSSAADMKSAILSIILS 564 Score = 93.5 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 85/201 (42%), Gaps = 4/201 (1%) Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 +E I + + + T + + L + + E + RA+Q K + + GY Sbjct: 87 VEAIGQAKNNPNITGIFLDLDNLSVGMASAEELRRALQDFKMSGKFVVSYADRYTQKGYY 146 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVN 171 ++ ++ + ++G IG+ Q + K LDK GV ++ K KA PF ++ Sbjct: 147 LASIADKLYLNPKGMLGLIGIATQTMFYKDALDKFGVKMEIFKVGTYKAAVEPFMLNGMS 206 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIW-TGAEAKKVGLIDVVGG 229 + + ++ + ++ESR D + +D G ++ +A ++ L+D + Sbjct: 207 DANREQITTYINGLWDKITSDIAESRKTAMDSVKMFADKGEMFGLAEKAVEMKLVDELAY 266 Query: 230 QEEVWQSLYALGVDQSIRKIK 250 + +V + L + +++ Sbjct: 267 RTDVEKELKKMSQRGEKDELR 287 >gi|260435894|ref|ZP_05789864.1| signal peptide peptidase SppA, 36K type [Synechococcus sp. WH 8109] gi|260413768|gb|EEX07064.1| signal peptide peptidase SppA, 36K type [Synechococcus sp. WH 8109] Length = 275 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 61/257 (23%), Positives = 123/257 (47%), Gaps = 6/257 (2%) Query: 41 IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK- 97 I + G I + +++ + + R + AL++ + SPGG+ + I A+ +++ + Sbjct: 21 IVVDGPITGDTRKRVLKALREVKRRE-FPALLLRIDSPGGTVGDSQEIHAALLRLREQGC 79 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 V+ ++AS G I A+ IVA ++ GSIGV+ + + +K+G+ +VKS Sbjct: 80 RVVASFGNISASGGVYIGVAAEKIVANPGTITGSIGVILRGNDLSRVFEKIGIRFDTVKS 139 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 P K SP ++ ++Q+++DSSY FV +V+ RN+ + +DGR+++G + Sbjct: 140 GPFKDILSPDRPLSDAERALLQELIDSSYGQFVGVVARGRNLELETVKCFADGRVFSGEQ 199 Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 A+ +GL+D +G ++ + L + + L + L+ + Sbjct: 200 AQALGLVDELGDEDHARRLAAQLADLDADDIRPVTLGKQRRKLSGLLPGSQLLHQLQQRL 259 Query: 277 PLMKQTKVQGLWAVWNP 293 + Q LW ++ P Sbjct: 260 SIELMGSGQVLW-LYRP 275 >gi|294785545|ref|ZP_06750833.1| protease IV [Fusobacterium sp. 3_1_27] gi|294487259|gb|EFG34621.1| protease IV [Fusobacterium sp. 3_1_27] Length = 551 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 56/273 (20%), Positives = 121/273 (44%), Gaps = 13/273 (4%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70 ++ + +A I + G+I + ++E+++ + + L+ Sbjct: 267 FLEYVSAYKRKKNKSKNTIAVINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLV 326 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + ++SPGGSA E I++ ++K+ P+ + ++ AS GY I+ + A +L G Sbjct: 327 LRINSPGGSALESEKIYQKLKKL--EVPIYISMGDLCASGGYYIATVGKKLFANPVTLTG 384 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ YP ++KL V+++ FS+++ ++ + + ++ Y F Sbjct: 385 SIGVVVLYPEFTETINKLKVNMEGFSKGKGFDIFDVFSKLSEESKEKIIYSMNEVYSEFK 444 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 V ++RNI + ++ GR+W G +AK+ GL+D +G + SL + + Sbjct: 445 EHVIQARNISEEDLEKIAGGRVWLGNQAKENGLVDELGSLNDCIDSLAKDLELKDFK--L 502 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 + + + + + D I ++ K Sbjct: 503 TYIRGRKSIMEIVSAMKPQFIKSDIIGKIEMLK 535 Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 55/286 (19%), Positives = 115/286 (40%), Gaps = 16/286 (5%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 F+L K K + + SL + V F+ + VED ++ I++ + + L++ +E ++ Sbjct: 27 FILGKFKNKDKV-SLKGVKTVVFNLNELVEDYM--ISTISVNKAL-SHEALLKALEHLAD 82 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D +I+ + S E I +K+ K +I + + A+ I + Sbjct: 83 DKKIEKIIIDIDEIDLSRVHIEEIKEIFEKLSVDKEIIAIGTTFDEYSYQVALLANKIYM 142 Query: 123 AA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQ 179 + S + G ++ PY K L LGV++ ++ K E +++ + + + Sbjct: 143 LNTKQSCLYFRGYEYKEPYFKNILATLGVTVNTLHIGDYKVAGESFSNDKMSEEKKESLI 202 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG--AEAKKVGLIDVVGGQEEVWQSL 237 ++ ++ + F+ LV E R D T + G + +A ++GLID + EE Sbjct: 203 NIKETLFQNFINLVKEKRK--VDITNEILSGDLIFANSEKAIQLGLIDGLSTYEE----- 255 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 + ++ ++ KN LE I + + Sbjct: 256 IGIDYNEDTVDFLEYVSAYKRKKNKSKNTIAVINLEGEIDTRESKE 301 >gi|237741816|ref|ZP_04572297.1| protease IV [Fusobacterium sp. 4_1_13] gi|229429464|gb|EEO39676.1| protease IV [Fusobacterium sp. 4_1_13] Length = 551 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 56/273 (20%), Positives = 122/273 (44%), Gaps = 13/273 (4%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70 + ++ + +A I + G+I + ++E+++ + + L+ Sbjct: 267 ILEYVSAYKRKKNKSKNTIAVINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLV 326 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + ++SPGGSA E I++ ++K+ P+ + ++ AS GY I+ + A +L G Sbjct: 327 LRINSPGGSALESEKIYQKLKKL--EVPIYISMGDLCASGGYYIATVGKKLFANPVTLTG 384 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ YP ++KL V+++ FS+++ ++ + + ++ Y F Sbjct: 385 SIGVVVLYPEFTETINKLKVNMEGFSKGKGFDIFDVFSKLSEESKEKIIYSMNEVYSEFK 444 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 V ++RNI + ++ GR+W G +AK+ GL+D +G + SL + + Sbjct: 445 EHVIQARNISEEDLEKIAGGRVWLGNQAKENGLVDELGSLNDCIDSLAKDLELKDFK--L 502 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 + + + + + D I ++ K Sbjct: 503 TYIRGRKSIMEIVSAMKPQFIKSDIIEKIEMLK 535 Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 93/238 (39%), Gaps = 12/238 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + L++ +E ++ D +I+ + S E I +K+ K +I + Sbjct: 71 EALLKALEHLADDKKIEKIIIDIDEIDLSRVHIEEIKEIFEKLSVDKEIIAIGTTFDEYS 130 Query: 111 GYLISCASNIIVAA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPF 167 + A+ I + + S + G ++ PY K L LGV++ ++ K E Sbjct: 131 YQVALLANKIYMLNTKQSCLYFRGYEYKEPYFKNILATLGVTVNTLHIGDYKVSGESFSN 190 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG--AEAKKVGLID 225 +++ + + + ++ ++ + F+ LV E R D T + G + +A ++GLID Sbjct: 191 DKMSEEKKESLINIKETLFQNFINLVKEKRK--VDITNEILSGDLIFANSEKAIQLGLID 248 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 + EE + ++ I ++ KN LE I + + Sbjct: 249 GLSTYEE-----IGIDYNEDTVDILEYVSAYKRKKNKSKNTIAVINLEGEIDTRESKE 301 >gi|33152022|ref|NP_873375.1| protease IV, signal peptide peptidase [Haemophilus ducreyi 35000HP] gi|33148244|gb|AAP95764.1| protease IV, signal peptide peptidase [Haemophilus ducreyi 35000HP] Length = 618 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 74/286 (25%), Positives = 136/286 (47%), Gaps = 18/286 (6%) Query: 18 VTLTVVYFSWSSHVEDNSPH-VARIAIRGQI---------EDSQELIERIERISRDDSAT 67 + + + N+ H +A I + G+I S+ + E + + D++ Sbjct: 303 INYADYALNLTDRFAVNAEHKIAVINVEGEIISGKSKERSAGSETISELLRQAREDNNVD 362 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAET 126 +I+ ++SPGGS A E I + +Q ++ KPV+T + +AAS GY IS S+ I+A+ Sbjct: 363 GVILRVNSPGGSVVASEIILQELQSIQQAGKPVVTSMGGLAASGGYWISATSDKIIASPN 422 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 ++ GSIG+ + LG+S V +SP+ S ++ + +++Q +++ Y Sbjct: 423 TITGSIGIFGLAMTFEKTAKHLGISEDGVATSPLAKTSSLQH-LSNEHAELIQINIENGY 481 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 F+ LVS RN+ + ++ G++W+G +A K GL+D +G + L L + Sbjct: 482 DAFLDLVSRGRNMSKAEVDKVAQGQVWSGEDALKHGLVDQLGDFHTAYDVLTDLINQKRK 541 Query: 247 RKIK-DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 K + + WF + SSLL++ K + AVW Sbjct: 542 AKGENEIKHFTAQWFIESDKGLFSSLLKNI-----GFKAKSTLAVW 582 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 109/283 (38%), Gaps = 40/283 (14%) Query: 4 VLKKIKTRYVMLSLV-----TLTVVYFSWSSHVEDNSPHVA-RIAIRGQIEDSQE----- 52 V + I + +L L+ +V S ++ ++ + VA R+ + G + D+ + Sbjct: 15 VRECIINLFFILFLLTGFASIAFLVNGSDTNKSKEPNEKVALRLNLSGYLTDNHDDFAHR 74 Query: 53 ------------------LIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKV 93 ++ I + ++D + T +++ LS GS ++ I ++ Sbjct: 75 LIQSELTNDESLKASTFDVVRAIGKAAKDPNITGIVLDLSKFEGSDHSSLSFIGSELKAF 134 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + + E + + Y ++ ++ I + + G+ F Y K LDK+ Sbjct: 135 KTSGKPVIAIGENYSQSQYYLASFADKIYLNKAGSINLQGLNFSSLYFKALLDKIDAVPH 194 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT------- 204 + K+ PF ++++ +A Q Q +++S +H F ++E+R I D+ Sbjct: 195 IFRVGTYKSAVEPFLRNDMSDEAKQNAQTLLNSIWHQFRTDIAENRMIAVDQVLPEPKSL 254 Query: 205 -LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 A L+ +G + E+ Q+L Sbjct: 255 IEKYKAVNANDAQYALNQKLVTDIGSKAEIEQALIEQFGKNEK 297 >gi|288803512|ref|ZP_06408943.1| signal peptide peptidase SppA, 67K type [Prevotella melaninogenica D18] gi|288333935|gb|EFC72379.1| signal peptide peptidase SppA, 67K type [Prevotella melaninogenica D18] Length = 592 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 67/288 (23%), Positives = 131/288 (45%), Gaps = 16/288 (5%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------------SQELIERIERISRD 63 VT+ + + + D VA G I D +Q + + +E++++D Sbjct: 286 VTIADMVNTEDKNQGDKDNEVAVYYAYGDIVDGVVGGLFSQDHQIDAQVVCKDLEKLAKD 345 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 A++V ++S GG AYA E I+ I ++K KPV+ + MAAS GY +S +N IVA Sbjct: 346 KDVKAVVVRVNSGGGDAYASEQIWHQIMELKKLKPVVVSMGGMAASGGYYMSAPANWIVA 405 Query: 124 AETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 T++ GSIG+ + V L +KLG+ VK++ + + + + + Sbjct: 406 EPTTITGSIGIFGMFADVSGLLREKLGLKFDEVKTNKYADFGTRARPFTEEEMSYLSQYI 465 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + Y F V+E R + ++ ++ G ++TG +A+K+GL+D +GG + L Sbjct: 466 NRGYKLFRHRVAEGRKMTEEQVEKVAQGHVFTGQDAQKIGLVDQLGGLDVAVAKAAQLAK 525 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + + + N+ ++ + ++ L + + + + Sbjct: 526 LPN-YRTCAYPKEPNFLEQMVEQTNPNNYLSQQLRVNLGDYYEPFKLL 572 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 97/260 (37%), Gaps = 24/260 (9%) Query: 14 MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQELI 54 + +L T+ + S + E V + + GQ+ +++ Sbjct: 24 LFALFTIAGMIASQDTTKEPEDNSVLVLNLSGQMSERSENNFLSQLQGSQINSLGLDDML 83 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 E I + +D + + + +YA +A+ +A+ K + I + Y Sbjct: 84 EGIRKAKDNDKIKGIYIEAGAFASDSYASMQALRKALLDFKKSRKWIIAYADTYTQGTYY 143 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVN 171 +S ++ + + G+ + ++K L K GV ++ VK K+ F +++ Sbjct: 144 LSSVADKVYLNPQGQIDWHGLASKPVFIKDLLAKFGVKMQVVKVGAYKSATEMFTGDKMS 203 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG--AEAKKVGLIDVVGG 229 + ++S + + V SR++ + +D I E K+ L+D + Sbjct: 204 DANREQTSAYLNSIWGNITKEVGASRSLSVAQLNAYADSMITFADPQEYVKLKLVDGLVY 263 Query: 230 QEEVWQSLYALGVDQSIRKI 249 +++ + + ++ + I Sbjct: 264 TDQIKEIVKKQLGIETDKDI 283 >gi|167753823|ref|ZP_02425950.1| hypothetical protein ALIPUT_02108 [Alistipes putredinis DSM 17216] gi|167658448|gb|EDS02578.1| hypothetical protein ALIPUT_02108 [Alistipes putredinis DSM 17216] Length = 594 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 67/265 (25%), Positives = 119/265 (44%), Gaps = 10/265 (3%) Query: 15 LSLVTLTVVYFSWSSHVED-NSPHVARIAIRGQIEDSQ---------ELIERIERISRDD 64 VTL ++ +++ +S +A + G I D + L ++ ++ R+D Sbjct: 289 FEFVTLGQYVSQLNADLKNISSSQIAIVYADGAIVDGEGYGADIYGNTLAAKLAKVRRND 348 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 A+++ ++SPGGSA A + I+R ++ ++ +KPVI + AAS GY ISC ++ IVA Sbjct: 349 DVKAVVLRVNSPGGSALASDVIWREVELLREKKPVIVSMGSYAASGGYYISCGADAIVAD 408 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 +T+L GSIGV + ++ L + A+ + + VD Sbjct: 409 KTTLTGSIGVFGMFLRLEDALKNKLGITFDAVRTNTSADMGVMRPLTGTERAAIMRSVDE 468 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 Y F V+E RN+P +K L ++ GR+W+G +A +GL+D GG + Sbjct: 469 VYETFTSYVAEGRNLPLEKVLDIAGGRVWSGTDALALGLVDTNGGLKTAIAIAADKAELG 528 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSIS 269 +I + + Sbjct: 529 DKFRIVEMTEAPTGFGAFFSGFMAK 553 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 89/244 (36%), Gaps = 16/244 (6%) Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAG---EAIFRAIQKVKNRKPVITEVHEMAASA 110 + IE D + + + G E + A+Q + I +E Sbjct: 87 LRAIETAKNDPRIQGIYLRPNG--GGVATYAILEELREALQDFRQGGKFIIAYNETYGQG 144 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK----SSPMKAEPSP 166 GY ++ ++ I + GV + K DKL + + + EP Sbjct: 145 GYYLASVADKIYLEPHGGMQWTGVSSTLMFYKGLFDKLDIQAEIFRPTACRYKSAVEPYF 204 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLID 225 S+++ + MQ +VDS ++ V+ESR I L+DG + EA G++D Sbjct: 205 LSKMSNANREQMQLLVDSYWNVMAEAVAESRGIELSTLNRLADGLEVSLAQEALDHGMVD 264 Query: 226 VVGG---QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282 + ++V++ A+ + + + DLKN+S S + I Sbjct: 265 GLLFEDQMDDVFREYGAVAKNDGQFEFVTLGQYVSQLNADLKNISSSQI---AIVYADGA 321 Query: 283 KVQG 286 V G Sbjct: 322 IVDG 325 >gi|293557142|ref|ZP_06675696.1| putative signal peptide peptidase [Enterococcus faecium E1039] gi|291600711|gb|EFF31009.1| putative signal peptide peptidase [Enterococcus faecium E1039] Length = 341 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 65/276 (23%), Positives = 129/276 (46%), Gaps = 21/276 (7%) Query: 30 HVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSP 76 D++ + ++ + G I + +E+++ + D + + + ++SP Sbjct: 53 EEGDSTQKIVKLTVDGTIAAGGSSGLFASEGYNHENFMEQLKAVEEDPTVKGIFLEVNSP 112 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG Y I + + ++ P+ + MAAS GY IS ++ I A E ++ GSIGV Sbjct: 113 GGGVYESAEIAKKLDTIRKEHDIPMYVSMKNMAASGGYYISAQADKIFATEETVTGSIGV 172 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + L+KLGV +VKS +K S + ++Q +DS+Y FVR+VS Sbjct: 173 IMSGLNYSGLLEKLGVEDTTVKSGALKDMGSGTRPETKEEEAVLQAYIDSAYQRFVRIVS 232 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 E RN + ++DGRI+ G +AK+VGL+D +G E+ Q++ + ++ +++ Sbjct: 233 EGRNKSEEAVKKIADGRIYDGVQAKEVGLVDELGFPEDALQAMRKEQKLEDA-ELVEYSS 291 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + + ++ +K ++ + ++ Sbjct: 292 TSSGFASTWLGSKLA-----EFQGLKSSETSQILSI 322 >gi|295698349|ref|YP_003603004.1| signal peptide peptidase SppA, 67K type [Candidatus Riesia pediculicola USDA] gi|291157055|gb|ADD79500.1| signal peptide peptidase SppA, 67K type [Candidatus Riesia pediculicola USDA] Length = 634 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 68/257 (26%), Positives = 131/257 (50%), Gaps = 16/257 (6%) Query: 37 HVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 ++A I ++G I +S+ ++++I + D + +LI+ ++SPGG+ Sbjct: 339 NIAVIFVQGMISGGNEENYENSSIANSENIVKKIRQAESDPNIRSLILRINSPGGTVSDS 398 Query: 84 EAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I A++ + N+K V+ + MA S GY IS S+ I+A +T++ GSIGV + Sbjct: 399 EKIRNALKSFRKNKKFVVVSMGGMATSGGYWISTESDRIIADQTTITGSIGVFGVVNTFE 458 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+ +G+ + ++P+ P ++ +NP ++++ VD +Y F++ VS SR Sbjct: 459 SSLEDIGIRCDGISTTPLSQGPIEYTGINPYLSEILKISVDHNYEKFLKYVSLSRKKNIQ 518 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 +++GRIW G+EA KVGLID +G ++ ++ + + +W + Sbjct: 519 DVRTIANGRIWIGSEAFKVGLIDQLGDFDDAIEAAMKISNIE--HPSLEWMFSDTSLMEN 576 Query: 263 LKNLSISSLLEDTIPLM 279 L +L S++ I + Sbjct: 577 LIDLFSSNIKNLFISTI 593 Score = 61.9 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 94/295 (31%), Gaps = 47/295 (15%) Query: 39 ARIAIRGQIED--------------------SQELIER---------IERISRDDSATAL 69 + + G I D E+I + I ++D + Sbjct: 59 LLLDLNGVILDHVPSESFLTSNNFNQKLFFSQDEIIRKNSLFEIIHSIREAAKDRKIKGM 118 Query: 70 IVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 ++ L + I + +++ K I + E + Y +S ++ I + Sbjct: 119 VLKLDHLIDADQPSLRYIGKCLKEFKKAGKPIFSIGENYSQLQYYLSSFADKIYISNYGK 178 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVNPKAVQMMQDVVDSSY 186 + G+ Y K FL+KL + ++ K+ PF ++ ++ + + + Sbjct: 179 IDIHGISNYRMYYKDFLEKLKIKSHIFRAGKYKSAVEPFMRNNMSHESKENHFSCLRKLW 238 Query: 187 HWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++R VSE+RNI + + R L+D V + + Sbjct: 239 KDYLRTVSENRNIKINDVFPEINSMIKKIKSNRGNITKYLMDQKLVDYVIEKTNPEEKFI 298 Query: 239 ALGVDQSIR----KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 +I + + + K L + I ++ VQG+ + Sbjct: 299 EKFGLSRDDNQYNRISIYEYKNDSTRRNDKFLGKRNDFPSNIAVIF---VQGMIS 350 >gi|167470630|ref|ZP_02335334.1| protease 4 [Yersinia pestis FV-1] Length = 586 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 18/273 (6%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 + +A + G I D L +I + D A+I+ ++SPGGS Sbjct: 287 TPAPQQGEQIAVLFANGAIIDGPQPPGNVGGDTLAAQIRQARLDPKIKAVILRVNSPGGS 346 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + ++ KP++ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 347 VSASELIRAELAALRAAHKPLVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 406 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L +GV V +SP+ S + P+ QMMQ +++ Y F+ LV+ SR+ Sbjct: 407 NTFQNSLASIGVHTDGVATSPLADV-SLTKALPPEFSQMMQINIENGYKTFIDLVATSRH 465 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256 ++ ++ G +W G +AK GL+D +G ++ + L + + D Sbjct: 466 KTPEQVDQIAQGHVWIGLDAKSNGLVDQLGDFDDAVKKAAELAKLKTWQLNWFVD----- 520 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 DL +S+ + +P QT + + Sbjct: 521 EPSLSDLILGQMSASVHAMLPAAIQTWLPAPLS 553 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 48/303 (15%), Positives = 102/303 (33%), Gaps = 44/303 (14%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------------- 51 + L ++ +YF + S + + + G I D Sbjct: 1 MALLILIGLGIYFQFQSKPVEPVKGALLVNLSGVIVDQPAINNKLRQWGRELLGASSNRL 60 Query: 52 ------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVH 104 +++E I DD+ L++SLS G+ + + I +A+++ ++ I V Sbjct: 61 QENSLFDIVETIRLAKDDDNINGLVLSLSDLTGADQSSLQYIGKALREFRDTGKKIYAVG 120 Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 + Y ++ +N I + V G Y K L+ L V+ + K+ Sbjct: 121 DSYNQTQYYLASFANKIYLSPQGAVDLHGFASNNLYYKSLLENLKVTTNIFRVGTYKSAV 180 Query: 165 SPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWT 214 P ++++ A + V + ++ VS +R + ++ L Sbjct: 181 EPMIRNDMSAAAREADSRWVGGLWQNYLTTVSANRRLTPEQLFPGAAGVISGLQVAGGSQ 240 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYA------LGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 A L+D + + EV +L D + I D+ P + + Sbjct: 241 AKYALDSKLVDQLAARPEVESALVEAFGWNKKTNDFNYISIYDYQPTPAPQQGEQIAVLF 300 Query: 269 SSL 271 ++ Sbjct: 301 ANG 303 >gi|167854498|ref|ZP_02477279.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Haemophilus parasuis 29755] gi|167854253|gb|EDS25486.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Haemophilus parasuis 29755] Length = 621 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 67/269 (24%), Positives = 129/269 (47%), Gaps = 13/269 (4%) Query: 18 VTLTVVYFSWSSHVED-NSPHVARIAIRGQIE---------DSQELIERIERISRDDSAT 67 + S S +A + + G I S +++ + + DD Sbjct: 306 IDFFDYSLSLSDRFNVVGKDKIAIVNVEGAIVLGESDDEVAGSDTIVKLLRKAREDDDVR 365 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAET 126 +++ ++SPGGSA A E I + ++ ++ KPV+ + MAAS GY I+ S+ I+A+ T Sbjct: 366 GVVLRINSPGGSAMASELIRQEVEDLQQAGKPVVASMGGMAASGGYWIAATSDKIIASPT 425 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 +L GSIG+ + KLGV+ V +SP + + S ++ + +++Q +++ Y Sbjct: 426 TLTGSIGIFGLAVSFEKTAKKLGVNEDGVSTSPFAQQTALKS-LSKEQSELIQISIENGY 484 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 F+ LVS+ R + ++ G++W G A + GL+D +G ++ + +L L ++ Sbjct: 485 DRFLELVSKGRKMSKGDVDKVAQGQVWLGESAFEKGLVDELGDFDDAYHALTILINEKRK 544 Query: 247 RKIK-DWNPPKNYWFCDLKNLSISSLLED 274 K + + W D + IS ++ D Sbjct: 545 AKGETEIERFSTQWLIDESDDLISQVMRD 573 >gi|285019630|ref|YP_003377341.1| periplasmic serine protease [Xanthomonas albilineans GPE PC73] gi|283474848|emb|CBA17347.1| putative periplasmic serine protease protein [Xanthomonas albilineans] Length = 630 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 64/257 (24%), Positives = 121/257 (47%), Gaps = 12/257 (4%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 D P VA + G+I + ++ + + DD+ A+++ + SPGG +A Sbjct: 329 DARPQVAVVVAAGEISAGEQPAGRIGGESTVQLLRQAREDDAVKAVVLRVDSPGGEVFAS 388 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I R + +K KPV+ + + AAS GY IS +++ I A +++ GSIG+ P + Sbjct: 389 EQIRREVVALKAAGKPVVVSMGDYAASGGYWISMSADRIYADPSTITGSIGIFGMVPNIA 448 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LDK+GV V ++ ++P Q++Q ++ Y F V+++R + Sbjct: 449 RALDKIGVHTDGVGTTRYAGAFDISRPMDPIVGQLIQSAINKGYADFTGKVAQARGKSVE 508 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQE--EVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ GR+W+GA+AK+ GL+D GG + + A Q +++ P + + Sbjct: 509 AIDQVARGRVWSGAQAKERGLVDAFGGFKDAVADAAARAKLGGQDKYRVRYIEKPASPFA 568 Query: 261 CDLKNLSISSLLEDTIP 277 + + S + + Sbjct: 569 QFVNGFAGSRMGVWMLG 585 Score = 74.3 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 85/213 (39%), Gaps = 12/213 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQKVKNRKPVITEVHEMAAS 109 ++L+ IE D + + L S +A + A++ +++ I + Sbjct: 99 RDLVRAIEAAKTDPKIERVALRLDKLQPSGFASMREVAAALEDLRSSGKQIVAYSDTLNQ 158 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPF- 167 + YL++ +N + + G+ Y + L DKLGV + K K+ P+ Sbjct: 159 SQYLLAAQANEVYLDPMGSMVLEGLGHYRQYFRQGLQDKLGVDVHLFKVGEYKSAAEPYV 218 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT----LVLSDGRIWTGAE----A 218 +P A + ++ + ++ ++++R + + + +G + G + A Sbjct: 219 LDAASPAAKEADLFWMNDVWQRYLADIAKARKLSPVQISAGIDSMPEGIVAAGGDMAKFA 278 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 + L+D + ++EV Q L GV + + Sbjct: 279 LQQKLVDGLKTRDEVEQLLAKRGVADADTIFRK 311 >gi|78187485|ref|YP_375528.1| protease IV [Chlorobium luteolum DSM 273] gi|78167387|gb|ABB24485.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Chlorobium luteolum DSM 273] Length = 583 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 64/274 (23%), Positives = 108/274 (39%), Gaps = 17/274 (6%) Query: 31 VEDNSPHVARIAIRGQIE--------------DSQELIERIERISRDDSATALIVSLSSP 76 D +A I + G I D + IE +D A+++ + SP Sbjct: 278 KADTKDRIALITLSGPIVRTTGEEALGLGSGVDVAAVRRSIEGALKDRRVKAMVLRIDSP 337 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GG A A + + KP++ + +AAS GY+ + + I A S+ GSIGV Sbjct: 338 GGDALASAEMLEMLDSAAVCKPLVVSMSGVAASGGYMAALSGRSIYAEPLSITGSIGVYA 397 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 P + + K+G+ V S + ++ +A + + Y FV V+ + Sbjct: 398 LKPEISGLVQKIGLGRSIVTRGRNADANSIYKPLDGEAYRKFVEASGEVYRDFVGKVARA 457 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI--RKIKDWNP 254 R + + L+ GR+WTG A +VGL+D GG + LG S +I + P Sbjct: 458 RKMSPGRVDSLAGGRVWTGRRALEVGLVDRSGGLFDALGEAQRLGGIDSTRQPEIVCY-P 516 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + W L S++ + + L Sbjct: 517 REKSWLELLVRGDFSAIGSRVESALAGRVIGRLM 550 Score = 78.9 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 44/258 (17%), Positives = 96/258 (37%), Gaps = 22/258 (8%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI------------------EDSQELI 54 V+L L L ++ + V + + G + Q+L+ Sbjct: 2 VLLPLAGLALILWLNHGGRSLPDRFVLSVPLSGSLDERAPSASGLPFSSAEGPLSLQDLL 61 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 + S D A+++ + + + RAI++ + + + ++ Sbjct: 62 FTLHHASSDPRVDAVLLDIDGVRTTPSKISELRRAIERTRASGKRVIAFLHSPEDSDCML 121 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172 A + ++ E + G+ + Y L K+GVS ++ + K+ PF + +P Sbjct: 122 GAACDSVIVEEGGFMLLDGLRAETLYFATPLRKIGVSFQAAQWKRYKSGIEPFVRTGPSP 181 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLIDVVGGQE 231 +A + + ++D Y ++ VS R++ D + D + T EA ++GL D V Sbjct: 182 EAEEEVSVLLDEVYRDYIGYVSRRRHLSPDSLRSIIDNVTLMTSPEAVRLGLADGVASSW 241 Query: 232 EVWQSLY-ALGVDQSIRK 248 + L L + + Sbjct: 242 RFHRELERRLTGKEPDPE 259 >gi|257882224|ref|ZP_05661877.1| protease/peptidase [Enterococcus faecium 1,231,502] gi|257885419|ref|ZP_05665072.1| protease/peptidase [Enterococcus faecium 1,231,501] gi|293568402|ref|ZP_06679723.1| signal peptide peptidase [Enterococcus faecium E1071] gi|294623115|ref|ZP_06702001.1| signal peptide peptidase [Enterococcus faecium U0317] gi|14548273|sp|Q9X480|SPPA_ENTFC RecName: Full=Putative signal peptide peptidase sppA gi|4760912|gb|AAD29142.1|AF099088_11 protease IV homolog [Enterococcus faecium] gi|257817882|gb|EEV45210.1| protease/peptidase [Enterococcus faecium 1,231,502] gi|257821275|gb|EEV48405.1| protease/peptidase [Enterococcus faecium 1,231,501] gi|291588923|gb|EFF20750.1| signal peptide peptidase [Enterococcus faecium E1071] gi|291597484|gb|EFF28649.1| signal peptide peptidase [Enterococcus faecium U0317] Length = 344 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 69/254 (27%), Positives = 121/254 (47%), Gaps = 14/254 (5%) Query: 30 HVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSP 76 ++ + ++++ G I D+ Q + ++++I D + +++ ++SP Sbjct: 57 EEGASNKKIVKLSVNGVIADTGESNLFSREQYNHQNFLTQLKKIQEDKAVKGVLLEVNSP 116 Query: 77 GGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 GG Y I + + K+K P+ T AAS GY IS S+ I A E + GSIGV+ Sbjct: 117 GGGIYESAEIAKEMAKIKKLDIPIYTAFKNTAASGGYYISAGSDKIFATEETTTGSIGVI 176 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 L+KLGV+ + KS +K SP + + + +++Q+ V S+Y FV +V++ Sbjct: 177 ISGLNYSGLLEKLGVTDATYKSGALKDMMSPQHKPSEEENKVIQEFVMSAYDRFVNVVAK 236 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 RN+ + L+DGRI+ G +A + GL+D +G E+ SL I+ N Sbjct: 237 GRNMDTNAVKELADGRIYDGNQAVENGLVDQIGYSEDALDSLKKEKKLTDATVIEYKNDT 296 Query: 256 KNYWFCDLKNLSIS 269 + L N Sbjct: 297 TGFASSWLGNKIAE 310 >gi|159903808|ref|YP_001551152.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus marinus str. MIT 9211] gi|159888984|gb|ABX09198.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus marinus str. MIT 9211] Length = 269 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 66/264 (25%), Positives = 127/264 (48%), Gaps = 5/264 (1%) Query: 33 DNSPHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + +ARI I G I ++ ++++ + AL+V + SPGG+ + I A+ Sbjct: 8 KSKKRMARIIIDGAINGDTRKLFLKAVKQVEERE-FPALLVRIDSPGGTVGDSQEIHAAL 66 Query: 91 QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++ V+ ++AS G + A+ IVA ++ GSIGV+ + + L+K+G Sbjct: 67 LRLRESGCHVVASFGNISASGGVYVGVAAEKIVANPGTITGSIGVILRGNNLSKLLEKIG 126 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + ++VKS K SP ++ + +++Q ++DSSY FV V++ R + + +D Sbjct: 127 IKFETVKSGLYKDILSPDRALSKEERELLQSLIDSSYGQFVEAVAKGRGLSEEVVRGFAD 186 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 GR++TG +A+++GL+D +G + L + PK L +I Sbjct: 187 GRVFTGTQARELGLVDELGDENHAKLLAAKLADLDEKLQPITLGRPKKKLLGLLPGGNIL 246 Query: 270 SLLEDTIPLMKQTKVQGLWAVWNP 293 L + + + Q LW ++ P Sbjct: 247 RNLVEQVTMELSNSGQILW-LFRP 269 >gi|292488447|ref|YP_003531329.1| protease IV [Erwinia amylovora CFBP1430] gi|292899636|ref|YP_003539005.1| protease IV [Erwinia amylovora ATCC 49946] gi|291199484|emb|CBJ46601.1| protease IV [Erwinia amylovora ATCC 49946] gi|291553876|emb|CBA20921.1| protease IV [Erwinia amylovora CFBP1430] gi|312172589|emb|CBX80845.1| protease IV [Erwinia amylovora ATCC BAA-2158] Length = 617 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 66/267 (24%), Positives = 115/267 (43%), Gaps = 14/267 (5%) Query: 30 HVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSA 80 + +VA I G I D +E +I D A++ ++SPGGS Sbjct: 319 KDSSSDGNVAVILASGAIADGEETPGSVGGDTTALQIRAARLDPKIKAIVFRVNSPGGSV 378 Query: 81 YAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A E I + KPV+ + MAAS GY +S ++ I+A+ +L GSIG+ Sbjct: 379 TASETIREELAAAKDAGKPVVVSMGGMAASGGYWVSTPADYIIASPNTLTGSIGIFSVIN 438 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 V+ L+ +GV V +SP+ + + + QM Q +D Y F+ LV++SR+ Sbjct: 439 TVENSLEAIGVHTDGVSTSPLADV-ASTRALPAEVQQMTQLSIDKGYQNFIDLVAKSRHK 497 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 + ++ G +WTG++AK GLID +G ++ L ++ ++ Sbjct: 498 TPGEIDQIAQGHVWTGSDAKANGLIDALGDFDDAVTKAAELAKLH-TPQLSWYH--DEPG 554 Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQG 286 D+ + +P + + Sbjct: 555 LLDMLVSQVEVAAHAALPATLKAYLPA 581 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 50/321 (15%), Positives = 112/321 (34%), Gaps = 46/321 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + +++L +V ++F +S + + G + D Sbjct: 19 LNFVREFVLNLFLILLIVVALGLWFQLHNASTPAATQKGALVVNLSGVVVDKPSVSNKFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 ++++ I + D + T +++ L + G+ + I +A+ Sbjct: 79 KIGRQLLGASSDRLKENSLFDVVDAIRQAKDDANITGVVLDLRNFAGADQPSLQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ I E + A Y ++ +N I + V G Y K +DKL V Sbjct: 139 REFRDGGKPIFASGESYSQAQYYLASFANKIYLSPLGNVDLHGFATHSLYYKTLIDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 S + K+ PF ++P+A + + ++ ++ +R I D+ + Sbjct: 199 SSHVFRVGTYKSAVEPFLRDSMSPEARDADGRWIGKLWQNYLNTLAANRQITADQVFPGA 258 Query: 209 DGRI--------WTGAEAKKVGLIDVVGGQEEVWQSLY------ALGVDQSIRKIKDWNP 254 G + T AK+ L+D + V L + I D+ Sbjct: 259 QGMLNGLQKFGGDTAQYAKENKLVDELASASRVEHELAKTFGWDKEANNYRGTSIYDYQV 318 Query: 255 PKNYWFCDLKNLSISSLLEDT 275 + ++ + S + D Sbjct: 319 KDSSSDGNVAVILASGAIADG 339 >gi|228470849|ref|ZP_04055696.1| signal peptide peptidase SppA, 67K type [Porphyromonas uenonis 60-3] gi|228307416|gb|EEK16426.1| signal peptide peptidase SppA, 67K type [Porphyromonas uenonis 60-3] Length = 594 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 73/269 (27%), Positives = 124/269 (46%), Gaps = 16/269 (5%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI----EDS---------QELIERIERIS 61 L V+L VY + S ++ + G+I DS +L +RI + Sbjct: 289 LYFVSLRDVY-ATRSSARSGEANIGVLFAEGEINVEETDSPFNTKKVVTDQLADRILEMG 347 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 DD AL+V ++SPGGS+Y E ++ A+ K KPV+ + + AAS GY +S ++ I Sbjct: 348 EDDDYDALVVRVNSPGGSSYISEQLWYAVHKASQNKPVVISMGDYAASGGYYMSSGASYI 407 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 A +++ GSIG+ P +K+GV VK++ + + + Q Sbjct: 408 FAEPSTITGSIGIFGVVPNATKLANKIGVHQDVVKTARYADLGALDRPWTEEERGLFQQY 467 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 V+ Y F++ VSE R + D+ ++ GR+WTGA+A +GL+D +GG ++ Sbjct: 468 VNRGYELFLKRVSEGRGMTRDQVDSIAQGRVWTGAQALGLGLVDELGGLQDAIAYAATQA 527 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISS 270 S + + +L N S + Sbjct: 528 GYDSYH--VTYARREVNVLQELFNRSTQT 554 Score = 82.4 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 91/269 (33%), Gaps = 27/269 (10%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------------- 50 + + L + + + + + + +I + I D+ Sbjct: 22 FVSLSIIALIGIFAGLSVGANNETQKIKDGSILKINLT-NISDTYVSNPWAELGFDKGDR 80 Query: 51 ------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH 104 +IE I+ DD + +++ PG + EA+ A++ K I Sbjct: 81 CQDLPLSYVIEAIDEAKNDDRIKGIYLNMMDPGCGFASAEALRGALEDFKQTGKFIVSYS 140 Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 + + GY ++ ++ + + + G+ + K LDK+GV + K K+ Sbjct: 141 DFYSLKGYYLASVADQLYVNKEGSIAFDGLAGGAVFFKDLLDKIGVEMMVFKVGTFKSAV 200 Query: 165 SPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD--GRIWTGAEAKK 220 P+ ++ + + + + V SR + + L+D + T Sbjct: 201 EPYMLNSMSEANRTQISSYLGDIWGRILGEVGTSRGLDSVRLQALADSMQSVQTTDSYLA 260 Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 LID Q++ + L +L + Sbjct: 261 NKLIDGALYQDQALEQLCSLVDVDGPDDL 289 >gi|189499532|ref|YP_001959002.1| signal peptide peptidase SppA, 67K type [Chlorobium phaeobacteroides BS1] gi|189494973|gb|ACE03521.1| signal peptide peptidase SppA, 67K type [Chlorobium phaeobacteroides BS1] Length = 596 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 61/273 (22%), Positives = 113/273 (41%), Gaps = 18/273 (6%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIE--------------DSQELIERIERISRDDSATAL 69 + + H+A I G I D + L ++ D+S A+ Sbjct: 287 AAVPWPYKPETKEHIAVITASGPIVRSSDDMAAGTEQGFDEETLRSSVQAALDDESVKAI 346 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 ++ + SPGG A A + + + + +KP++T + +AAS GY+I+ A++ I A ++ Sbjct: 347 VLRIDSPGGDALASANMLQVLDSARVKKPIVTSMSSVAASGGYMIALAADSIFAEPLTVT 406 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV P + +K+ ++ + + F ++ + + Y F Sbjct: 407 GSIGVYALKPEISKLQEKIALNREVFTRGKNADAYTVFKPLDEAGMAKFMETTGWIYDDF 466 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS--IR 247 + V SR + ++ ++ GR+W G A K GL+D +GG E ++ L S + Sbjct: 467 LDKVVRSRKMTREEVDAVAGGRVWMGEAAVKNGLVDRIGGLPEALRAAQVLAGIDSAAVP 526 Query: 248 KIKDWNPPKNYWFCDLKNLSI--SSLLEDTIPL 278 +K + P+ S L IP Sbjct: 527 GLKFYPEPQGLMDYLFGGGPGIESHLFSSKIPA 559 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 107/247 (43%), Gaps = 21/247 (8%) Query: 21 TVVYFSWSSHVEDNSPHVARIAIRGQIEDS------------------QELIERIERISR 62 VY +++ V +I I G I ++ Q++I ++R S Sbjct: 25 IGVYRLFTAQKSLPEEFVLKIDISGDIRETVDTGFALPFERESQELSLQDIIFLLDRASE 84 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D +++ + + + I RAI++ +N ++ A ++ A + ++ Sbjct: 85 DTRIKGILLDIDGVRTGSAKIQQIQRAIERTRNSGKLVNAFLRNAGDQDVWLASACDAMI 144 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV--NPKAVQMMQD 180 A + + G+ + + L+KLGVS ++V+ + K+ PF+ + +P+ + ++ Sbjct: 145 AERGNFLLLDGLRAELLFYTGTLEKLGVSFQAVQWTDWKSGVEPFTRLAASPEFRERIEM 204 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 +DS Y + V++ R+IP + ++ + + + +AK++ ++D V G E + L Sbjct: 205 SLDSVYAAYTGYVTKQRDIPLETYEIIINEKTVLSADQAKELKVVDEVNGHWEYLERLKK 264 Query: 240 LGVDQSI 246 Sbjct: 265 SYGKGKN 271 >gi|76800828|ref|YP_325836.1| signal peptide peptidase [Natronomonas pharaonis DSM 2160] gi|76556693|emb|CAI48265.1| probable signal peptide peptidase [Natronomonas pharaonis DSM 2160] Length = 335 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 65/270 (24%), Positives = 117/270 (43%), Gaps = 22/270 (8%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSP--HVARIAIRGQIE---------------DSQELIE 55 V+ +V TV + +P +VA +A+ G I + +++E Sbjct: 44 VVFVIVAATVGLRIGGNIATSLAPGYNVAEVAVEGPITRDGGGGMPLSPPGSPGADDIVE 103 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 +IE DD+ AL++ L++PGG+ + I A + P + + AS GY I+ Sbjct: 104 QIEDADADDNVEALLLRLNTPGGAVVPSDDIRLAAEAF--DGPTVAYTTDACASGGYWIA 161 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 + + A S+VGSIGV LD+ GV + + + K PF ++ Sbjct: 162 SGCDELWARRGSVVGSIGVRGSRMTAAELLDRAGVEYEQLTAGEYKEAGVPFDDLGDDER 221 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q +Q +VD Y FV V+E R + ++ +++ G EA + GL+D +G ++EV + Sbjct: 222 QYLQGIVDDYYDQFVETVAEGREMEPSAVRE-TEAKVFLGEEAFERGLVDDLGTKDEVCE 280 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L + + + + P + Sbjct: 281 RLEEVLGTE--VETTELEPQQGLAARLQGG 308 >gi|226356235|ref|YP_002785975.1| peptidase S49 [Deinococcus deserti VCD115] gi|226318225|gb|ACO46221.1| putative peptidase S49, Signal peptide peptidase (SPPase) [Deinococcus deserti VCD115] Length = 533 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 60/285 (21%), Positives = 113/285 (39%), Gaps = 22/285 (7%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQELIERIER 59 V+ + + VA + + G I S ++ ++R Sbjct: 242 LAAVMDLLMPRNANAKAGRVAVVPVIGTIVPGKSRNNPIPLPLMGGPMAGSDTVVAALKR 301 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119 D A++V ++S GGSA A + ++R I + KPV+ + E AAS GY ++ + Sbjct: 302 AKEDKKTKAIVVYVNSGGGSALASDLMWREIA--TSEKPVVVVMGEYAASGGYYLATHAR 359 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 IVA+ +L GSIGV+ P ++ F + G+ + V S + Q ++ Sbjct: 360 HIVASPYTLTGSIGVVSGKPIMREFNARHGLKPERVGR-ERALMHSASQPYTVEERQHVE 418 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + Y F+ V+E R + ++ + GRIW G +A ++GL+D +G Sbjct: 419 RAIAEVYDRFITRVAEGRKLSKERVNEIGRGRIWAGQDALELGLVDELGDLHTGVLRATE 478 Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 L + + P + + + + P + + Sbjct: 479 LAGLPYDAPVWNVAPKSSGPLPEFAQEAARAAQVTIWPFGNERVL 523 Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 78/186 (41%), Gaps = 3/186 (1%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + L ++E++ + ++V +S GS A+ + ++ K V+ + ++ +A Sbjct: 51 EALSAKVEKLRHAEWLHGVLVRVSGFTGSPATAHAVRGILSRLAQDKRVVAYLPQLTMTA 110 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFS 168 S A IVA E++ V G + ++ FL K G+ ++++ KA Sbjct: 111 LIAGSGA-REIVAPESADVALAGFATEPTFMGAFLKKHGIEFENLRIREYKAALTRFSQE 169 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 ++ + +Q + + ++ +R + + D + + A + GLI V Sbjct: 170 HMDDANREQLQAFLTGLETAWASDLAAARGVSIETAQAWLDADLTSAQGALEAGLITKVA 229 Query: 229 GQEEVW 234 ++E+ Sbjct: 230 YEDELV 235 >gi|262362087|gb|ACY58808.1| protease IV [Yersinia pestis D106004] Length = 579 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 18/273 (6%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 + +A + G I D L +I + D A+I+ ++SPGGS Sbjct: 280 TPAPQQGEQIAVLFANGAIIDGPQPPGNVGGDTLAAQIRQARLDPKIKAVILRVNSPGGS 339 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + ++ KP++ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 340 VSASELIRAELAALRAAHKPLVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 399 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L +GV V +SP+ S + P+ QMMQ +++ Y F+ LV+ SR+ Sbjct: 400 NTFQNSLASIGVHTDGVATSPLADV-SLTKALPPEFSQMMQINIENGYKTFIDLVATSRH 458 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256 ++ ++ G +W G +AK GL+D +G ++ + L + + D Sbjct: 459 KTPEQVDQIAQGHVWIGLDAKSNGLVDQLGDFDDAVKKAAELAKLKTWQLNWFVD----- 513 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 DL +S+ + +P QT + + Sbjct: 514 EPSLSDLILGQMSASVHAMLPAAIQTWLPAPLS 546 Score = 80.8 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 46/296 (15%), Positives = 99/296 (33%), Gaps = 44/296 (14%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------E 52 ++V F++ + + + G I D + Sbjct: 1 MSVFIFNFKVSLWSQLKVALLVNLSGVIVDQPAINNKLRQWGRELLGASSNRLQENSLFD 60 Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAG 111 ++E I DD+ L++SLS G+ + + I +A+++ ++ I V + Sbjct: 61 IVETIRLAKDDDNINGLVLSLSDLTGADQSSLQYIGKALREFRDTGKKIYAVGDSYNQTQ 120 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SE 169 Y ++ +N I + V G Y K L+ L V+ + K+ P ++ Sbjct: 121 YYLASFANKIYLSPQGAVDLHGFASNNLYYKSLLENLKVTTNIFRVGTYKSAVEPMIRND 180 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKV 221 ++ A + V + ++ VS +R + ++ L A Sbjct: 181 MSAAAREADSRWVGGLWQNYLTTVSANRRLTPEQLFPGAAGVISGLQVAGGSQAKYALDS 240 Query: 222 GLIDVVGGQEEVWQSLYA------LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 L+D + + EV +L D + I D+ P + + ++ Sbjct: 241 KLVDQLAARPEVESALVEAFGWNKKTNDFNYISIYDYQPTPAPQQGEQIAVLFANG 296 >gi|118474707|ref|YP_892637.1| signal peptide peptidase SppA, 36K type [Campylobacter fetus subsp. fetus 82-40] gi|118413933|gb|ABK82353.1| signal peptide peptidase SppA, 36K type [Campylobacter fetus subsp. fetus 82-40] Length = 287 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 73/248 (29%), Positives = 118/248 (47%), Gaps = 5/248 (2%) Query: 1 MEFVLKKIKTRYVML-----SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIE 55 ++F+ KI + + S V L +V + + ++ I+++G I D E++ Sbjct: 4 LKFIFSKIGAIFKFVNEYFKSFVFLLIVILIIVNSGKSEIANLTEISLKGAIIDESEILS 63 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 +I D +++++ SPGGS I AI+ + + KPVI AS Y S Sbjct: 64 QIYEAKNDSFIKGVLLNIDSPGGSMAPSVQISDAIKDLASIKPVIAYASGTMASGSYYSS 123 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 +N I A S +GSIGV+ Q P V+ KLGVS +++K+ K + N Sbjct: 124 IWANKIYANRGSFIGSIGVIVQSPNVEELAKKLGVSTQTIKAGKYKEAGTFIRGWNEDEK 183 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 +Q +V+ SY F V+ +RN+ DK + ++ R++ +AK VGLID V EV Sbjct: 184 NELQSLVNRSYEMFYTDVAMARNLDIDKKDIWANARVFLAPDAKSVGLIDDVKSYFEVKS 243 Query: 236 SLYALGVD 243 L L Sbjct: 244 ELELLSGV 251 >gi|94984761|ref|YP_604125.1| peptidase S49 [Deinococcus geothermalis DSM 11300] gi|94555042|gb|ABF44956.1| peptidase S49 [Deinococcus geothermalis DSM 11300] Length = 536 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 61/285 (21%), Positives = 116/285 (40%), Gaps = 22/285 (7%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQELIERIER 59 V+ + VA +++ G I S ++ ++ Sbjct: 245 LAAVLDLLLPRRGNAKAGRVAVVSLVGSIVPGKSRHNPLPLPLLGGPLAGSDTVVAALKH 304 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119 +DD A+++ ++S GGSA A + I+R + + KPV+ + E AAS GY + + Sbjct: 305 AKKDDKTKAIVLYVNSGGGSALASDLIWREVA--TSEKPVVAVMGEYAASGGYYVLTHAR 362 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 IVA+ +L GSIGV+ P ++ F + G+ + V S S + + ++ Sbjct: 363 HIVASPYTLTGSIGVVSGKPVLQEFNARHGLKPEPVGS-ERALMYSAARPFSDEERAHVE 421 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + Y FV V+E R + ++ + GRIW+G +A +GL+D +G + Sbjct: 422 QGIAEVYDRFVNRVAEGRGMTPERVNEIGRGRIWSGLDALDLGLVDELGDLRTGIERACE 481 Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 L + + P K + + + P ++ + Sbjct: 482 LAGLPYDAPVWNATPAKTGPLPEFVQQAARAAQVSVWPFGRERVL 526 Score = 58.5 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 77/186 (41%), Gaps = 3/186 (1%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + L R++++ D ++V +S + AI + + ++ K V+ + ++ +A Sbjct: 54 EGLAARVDKLRHADWLHGVLVRISEFTAAPATAHAIRQLLARLAQDKRVVAYLPQLTMTA 113 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFS 168 S A IVA E++ V G Q ++ FL + G+ ++++ KA Sbjct: 114 LLAASGA-REIVAPESADVLVPGFAVQPTFLGAFLKRHGIEFENLRIREYKAALTRFSQD 172 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 ++ + + + S + ++ +R + G + + A+ GLI V Sbjct: 173 HMDEANREQLTAYLHSLEKAWALDLAAARGVSEATARTWLRGDLTSARAAQAAGLITQVA 232 Query: 229 GQEEVW 234 ++E+ Sbjct: 233 YEDELV 238 >gi|170024325|ref|YP_001720830.1| protease 4 [Yersinia pseudotuberculosis YPIII] gi|169750859|gb|ACA68377.1| signal peptide peptidase SppA, 67K type [Yersinia pseudotuberculosis YPIII] Length = 616 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 18/273 (6%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 + +A + G I D L +I + D A+I+ ++SPGGS Sbjct: 317 TPAPQQGEQIAVLFANGAIIDGPQTPGNVGGDTLAAQIRQARLDPKIKAVILRVNSPGGS 376 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + ++ KP++ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 377 VSASELIRAELAALRAAHKPLVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 436 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L +GV V +SP+ S + P+ QMMQ +++ Y F+ LV+ SR+ Sbjct: 437 NTFQNSLASIGVHTDGVATSPLADV-SLTKALPPEFSQMMQINIENGYKTFIDLVATSRH 495 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256 ++ ++ G +W G +AK GL+D +G ++ + L + + D Sbjct: 496 KTPEQVDQIAQGHVWIGLDAKSNGLVDQLGDFDDAVKKAAELAKLKTWQLNWFVD----- 550 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 DL +S+ + +P QT + + Sbjct: 551 EPSLSDLILGQMSASVHAMLPAAIQTWLPAPLS 583 Score = 82.7 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 47/293 (16%), Positives = 97/293 (33%), Gaps = 44/293 (15%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIE 55 +YF + S + + + G I D +++E Sbjct: 41 IYFQFQSKPVEPVKGALLVNLSGVIVDQPAINNKLRQWGRELLGASSNRLQENSLFDIVE 100 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 I DD+ L++SLS G+ + I +A+++ ++ I V + Y + Sbjct: 101 TIRLAKDDDNINGLVLSLSDLTGADQPSLQYIGKALREFRDTGKKIYAVGDSYNQTQYYL 160 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172 + +N I + V G Y K L+ L V+ + K+ P ++++ Sbjct: 161 ASFANKIYLSPQGAVDLHGFASNNLYYKSLLENLKVTTNIFRVGTYKSAVEPMIRNDMSA 220 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLI 224 A + V + ++ VS +R + ++ L A L+ Sbjct: 221 AAREADSRWVGGLWQNYLTTVSANRRLTPEQLFPGAAGVISGLQVAGGSQAKYALDSKLV 280 Query: 225 DVVGGQEEVWQSLYA------LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 D + + EV +L D + I D+ P + + ++ Sbjct: 281 DQLAARPEVESALVEAFGWNKKTNDFNYISIYDYQPTPAPQQGEQIAVLFANG 333 >gi|254362448|ref|ZP_04978557.1| S49 family peptidase IV [Mannheimia haemolytica PHL213] gi|261494115|ref|ZP_05990618.1| S49 family peptidase IV [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496044|ref|ZP_05992454.1| S49 family peptidase IV [Mannheimia haemolytica serotype A2 str. OVINE] gi|153094037|gb|EDN74953.1| S49 family peptidase IV [Mannheimia haemolytica PHL213] gi|261308294|gb|EEY09587.1| S49 family peptidase IV [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310281|gb|EEY11481.1| S49 family peptidase IV [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 618 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 129/271 (47%), Gaps = 15/271 (5%) Query: 31 VEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 E N+P +A + + G I S+ L++ +++ D + LI+ ++SPGGSA Sbjct: 317 AEVNAPKIAVVNVEGAIAGGESDEMNVGSETLVKLLQQARDDKNVEGLILRINSPGGSAV 376 Query: 82 AGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 A E I + ++ + KPV+ + MAAS GY I+ S+ I+A+ +L GSIG+ Sbjct: 377 ASELIRQEVEAFQQAGKPVVASMGGMAASGGYWIAATSDKIIASPNTLTGSIGIFGLAVT 436 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + LGVS + +S + + S + + +++Q +++ Y F+ LVS R +P Sbjct: 437 FEKTAKNLGVSEDGIATSALAQQAGLKS-LPQEQAEVLQIGIENGYDRFLELVSRGRKMP 495 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 + ++ G++W G +A K GL+D +G + +L L + + N PK F Sbjct: 496 KEVVDKVAQGQVWLGTDALKHGLVDELGNFNVAYNALSELINQKREAE----NQPKVEQF 551 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 L T+ + ++Q A W Sbjct: 552 GLQWFAEQDDSLFGTLARDFKAQLQFSVANW 582 Score = 69.3 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 39/308 (12%), Positives = 98/308 (31%), Gaps = 39/308 (12%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------------------EL 53 + + S S+ + R+ + G + D++ ++ Sbjct: 34 VVAFISSSGSTQKPVFNQGALRLNLDGYLADNREEFTDFYRLVQSELGSSEPFKISTFDV 93 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ I D T L++ L + ++ + I I K + V E + Y Sbjct: 94 VQAISHAKNDPKITGLVLDLQKLQSADFSSLDFIGNEINNFKQSGKPVIAVGEDYSQKQY 153 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EV 170 ++ ++ I + V G+ + Y K LDK+ + K+ PF ++ Sbjct: 154 YLASFADEIYLNKVGAVDLKGLNYSNTYFKTLLDKIEAEPHIFRVGTYKSAVEPFMRDDM 213 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVG 222 + +A Q + ++ ++ V ++++RNI + A Sbjct: 214 SEEAKQNARGWLNGTWQQTVATLAQNRNIEPQALDLSPANYIEKYKQAKGDDAQLALNQK 273 Query: 223 LIDVVGGQEEVWQSLYALGV---DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 + + +E L A + S +I+ + + + + + + Sbjct: 274 WVSQLVSSQESRDKLIAQFGKNSEGSYNQIEFLDYMTELNDRFAEVNAPKIAVVNVEGAI 333 Query: 280 KQTKVQGL 287 + + Sbjct: 334 AGGESDEM 341 >gi|261886139|ref|ZP_06010178.1| signal peptide peptidase SppA, 36K type [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 287 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 73/248 (29%), Positives = 118/248 (47%), Gaps = 5/248 (2%) Query: 1 MEFVLKKIKTRYVML-----SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIE 55 ++F+ KI + + S V L +V + + ++ I+++G I D E++ Sbjct: 4 LKFIFSKIAAIFKFVNEYFKSFVFLLIVILIIVNSGKSEIANLTEISLKGAIIDESEILS 63 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 +I D +++++ SPGGS I AI+ + + KPVI AS Y S Sbjct: 64 QIYEAKNDSFIKGVLLNIDSPGGSMAPSVQISDAIKDLASIKPVIAYASGTMASGSYYSS 123 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 +N I A S +GSIGV+ Q P V+ KLGVS +++K+ K + N Sbjct: 124 IWANKIYANRGSFIGSIGVIVQSPNVEELAKKLGVSTQTIKAGKYKEAGTFIRGWNEDEK 183 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 +Q +V+ SY F V+ +RN+ DK + ++ R++ +AK VGLID V EV Sbjct: 184 NELQSLVNRSYEMFYTDVAMARNLDIDKKDIWANARVFLAPDAKSVGLIDDVKSYFEVKS 243 Query: 236 SLYALGVD 243 L L Sbjct: 244 ELELLSGV 251 >gi|261867920|ref|YP_003255842.1| signal peptide peptidase SppA, 67K type [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413252|gb|ACX82623.1| signal peptide peptidase SppA, 67K type [Aggregatibacter actinomycetemcomitans D11S-1] Length = 626 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 62/256 (24%), Positives = 117/256 (45%), Gaps = 13/256 (5%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSL 73 + D +A + + G I D + + + + D A+++ + Sbjct: 313 LASLPDRMSGDTKNKIAVVNVEGAIIDGETDEENVGGDTIANLLRKAYDDKDVKAVVLRV 372 Query: 74 SSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 +SPGGSA+A E I + + ++ KPV+ + MAAS GY IS ++ IVA + ++ GSI Sbjct: 373 NSPGGSAFASEIIRQELSHLQQAGKPVVVSMGGMAASGGYWISSTADYIVADKNTITGSI 432 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 G+ P + + K+GVS VK+S + S F ++ + ++Q ++ Y F+ Sbjct: 433 GIFAVLPTFEKTIKKIGVSADGVKTSDLALG-SAFLPLSSELNDVLQLEIEHGYDEFLTK 491 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG--VDQSIRKIK 250 VS+ R++ + ++ G++W G+EA + L+D +G L KI+ Sbjct: 492 VSQGRHLSKAQVDKIAQGQVWLGSEAIEHKLVDELGDLNTALGKAMELVNEKLDENSKIQ 551 Query: 251 DWNPPKNYWFCDLKNL 266 + + D + Sbjct: 552 EEGFSVEWLDDDSGSF 567 Score = 69.6 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 33/249 (13%), Positives = 88/249 (35%), Gaps = 16/249 (6%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA-IQKVKNRKPVITEVHEMAASA 110 +++ I+ + DD L++ L+ G A I+ K + + A Sbjct: 96 DVVYAIDSAALDDKVRGLVLDLNYFQGGDLPSLEFVGASIENFKKNGKQVIAYSDNYNRA 155 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168 Y ++ ++ + V G++ + Y K L+ L V+ + K+ PF + Sbjct: 156 QYFLASYADEVYINPVGTVSIDGLVQENLYYKDLLESLEVNPHVFRVGTYKSAVEPFLRN 215 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-----------KTLVLS-DGRIWTGA 216 +++ +A ++ + ++ + + V+E+RNI + + L D + Sbjct: 216 DMSDEAKTNLRRWLGIMWNNYKQRVAENRNIKEEAVAPNAHTYLTELKALQGDMTAYVKQ 275 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 G++D ++ +L+ D+ + + + + + + Sbjct: 276 RKLINGVLDRF-NLDKKLTALFGENEDKQPKMVDYDTYLASLPDRMSGDTKNKIAVVNVE 334 Query: 277 PLMKQTKVQ 285 + + Sbjct: 335 GAIIDGETD 343 >gi|220934529|ref|YP_002513428.1| peptidase S49 [Thioalkalivibrio sp. HL-EbGR7] gi|219995839|gb|ACL72441.1| peptidase S49 [Thioalkalivibrio sp. HL-EbGR7] Length = 311 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 62/261 (23%), Positives = 116/261 (44%), Gaps = 15/261 (5%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISRDDSATALIVSLS 74 + + + PH A + I+G I +S + + + + + RD + A+++ ++ Sbjct: 45 IIFMSGPMGPGAKKPGPHTALVDIQGVISESSQASADLVTQGLRQAFRDKNTVAVMLRVN 104 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPV---ITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 SPGGS I ++++K P + ++ AS GY +++ I A +S+VGS Sbjct: 105 SPGGSPVQSAYINNELRRLKAEHPDTPVYAVISDVGASGGYYAVVSADYIYADASSVVGS 164 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IGV + +DKLG+ + + + K PF V+P+ +Q ++D+ + FV Sbjct: 165 IGVRMDGFGLVEAIDKLGIERRLMTAGENKGLLDPFLPVDPREQAHVQRLLDNIHAQFVD 224 Query: 192 LVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 V R L +G IWTG EA +G+ID +G V + + I Sbjct: 225 AVKTGRGDRLKGSDEELFNGLIWTGDEALALGIIDGLGSPGYVAREVIGQ------ENIV 278 Query: 251 DWNPPKNYWFCDLKNLSISSL 271 D+ P ++ + + + Sbjct: 279 DFTPRQDIFRRLADSFGAAMG 299 >gi|149197052|ref|ZP_01874104.1| protease IV [Lentisphaera araneosa HTCC2155] gi|149139598|gb|EDM27999.1| protease IV [Lentisphaera araneosa HTCC2155] Length = 587 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 60/277 (21%), Positives = 119/277 (42%), Gaps = 6/277 (2%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSP 76 ++ + + N+ +A + + G I+ + L I R S++D A+++ ++SP Sbjct: 270 AISFFQKLSAPKKKSNNDILALVNLDGTIDTRMGEALRRYIMRASQNDKVKAMVLRINSP 329 Query: 77 GGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 GGSA A E I +A ++ K K + + +AAS GY + I A ++ GSIGVL Sbjct: 330 GGSALASEMICQATEEFKKTGKTFVVSMSNVAASGGYYSAVFGEPIYAESATITGSIGVL 389 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 + DK+G+S K S S N + + ++ Y F + + Sbjct: 390 GGKLVMSKMFDKIGISTHEFKIGKYSDINSSTSFFNEDQRAKITESMNRVYDVFKGRIIQ 449 Query: 196 SRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 R ++ GR++TG +AK++GL+D +GG E + ++ + Sbjct: 450 GREGKLKGDLEAMAGGRVYTGLQAKELGLVDKIGGLREAINDAKEQAGLKR-YSLETFPK 508 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 ++ +++ ++ + V+ + + W Sbjct: 509 QLSFEEMLMESFRPQEKEDEFVSY-DPITVKSMNSAW 544 Score = 65.4 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 81/241 (33%), Gaps = 5/241 (2%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 L+ + D A+++ + + R I ++K + ++ Sbjct: 54 HLLSCLNYCVSKDDVKAVVLYAEGMRLGLAQKQELLRRIHEIKKAGKKV-YLYTHGLDEA 112 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--E 169 L S I V G+ Q Y K LDKLG+ V K+ PF Sbjct: 113 SLPLAQSTEISLFPEGGVSFRGLAMQQLYFKGMLDKLGLEADIVHIGDYKSAGEPFYLTA 172 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 + +A + +++ + + + + S L D +++ +A L+D + Sbjct: 173 PSEEAAKQQRELGEGLFVEVTKSCATSERKDAAAYRALIDEGLFSSQQALDHKLVDTLEY 232 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 E + L + ++ PK++ + N+ + + K+ + A Sbjct: 233 HNEFIKRLKKTYAKADFK--LNYGMPKSFEPPKINNMMDAISFFQKLSAPKKKSNNDILA 290 Query: 290 V 290 + Sbjct: 291 L 291 >gi|257898289|ref|ZP_05677942.1| protease/peptidase [Enterococcus faecium Com15] gi|257836201|gb|EEV61275.1| protease/peptidase [Enterococcus faecium Com15] Length = 341 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 65/276 (23%), Positives = 129/276 (46%), Gaps = 21/276 (7%) Query: 30 HVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSP 76 D++ + ++ + G I + +E+++ + D + + + ++SP Sbjct: 53 EEGDSTQKIVKLTVDGTIAAGGSSGLFASEGYNHENFMEQLKAVEEDPTVKGIFLEVNSP 112 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG Y I + + ++ P+ + MAAS GY IS ++ I A E ++ GSIGV Sbjct: 113 GGGVYESAEIAKKLDTIRKEHDIPMYVSMKNMAASGGYYISAQADKIFATEETVTGSIGV 172 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + L+KLGV +VKS +K S + ++Q +DS+Y FVR+VS Sbjct: 173 IMSGLNYSGLLEKLGVEDTTVKSGALKDMGSGTRPETKEEEAVLQAYIDSAYQRFVRIVS 232 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 E RN + ++DGRI+ G +AK+VGL+D +G E+ Q++ + ++ +++ Sbjct: 233 EGRNKSEEAVKKIADGRIYDGVQAKEVGLVDELGFPEDALQAMRKEQKLEDA-ELVEYSS 291 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + + ++ +K ++ + ++ Sbjct: 292 ASSGFASTWLGSKLA-----EFQGLKSSETSQILSI 322 >gi|332971011|gb|EGK09983.1| signal peptide peptidase SppA [Psychrobacter sp. 1501(2011)] Length = 357 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 61/270 (22%), Positives = 115/270 (42%), Gaps = 22/270 (8%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQ-----ELIERIERISRDDSATALIVSLSSPGGSAYAG 83 S + +PH+A + I G I ++ + + A++++++SPGGS Sbjct: 91 STADVTTPHLAVVDIEGVISADDPANAYDVSAALTEAFESKGSKAVVLNINSPGGSPVQS 150 Query: 84 EAIFRA---IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + I++ ++K K + + +M AS Y I+ A++ I +SLVGSIGV+ Sbjct: 151 DQIWQTMMDLRKQHPDKKLYAVIGDMGASGAYYIASAADEIYVNPSSLVGSIGVIMPGYN 210 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 V+ + K GV ++ + K S +++ Q ++ V+++++ F+ V + R Sbjct: 211 VEGLMKKAGVKDTTMTAGEYKDILSISRDLSDYEKQHIESVLNNTHKHFINAVKQGRGDR 270 Query: 201 YDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 L G WTG +A +GL D G L L + + + ++ P Sbjct: 271 LKDPEKNKLFTGLFWTGEQAIALGLADKKGS-------LMTLEKELKVDDVINYTPADPL 323 Query: 259 W-----FCDLKNLSISSLLEDTIPLMKQTK 283 F I S +E + +QT Sbjct: 324 QMFLSNFAVQLGSGIGSSVELKLLPEEQTS 353 >gi|323498312|ref|ZP_08103314.1| protease IV [Vibrio sinaloensis DSM 21326] gi|323316740|gb|EGA69749.1| protease IV [Vibrio sinaloensis DSM 21326] Length = 616 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 71/272 (26%), Positives = 122/272 (44%), Gaps = 13/272 (4%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSP 76 + ++ + VA + G I D + + + DD A+++ + SP Sbjct: 315 TMAARFNTAADDVAIVVASGAIMDGNQPRGTVGGDTVAALLRQARNDDKVKAVVLRVDSP 374 Query: 77 GGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 GGSA+A E I I +K KPV+ + +AAS GY IS +++ IVA T+L GSIG+ Sbjct: 375 GGSAFASEVIRNEILALKEAGKPVVASMSSVAASGGYWISTSADRIVAQPTTLTGSIGIF 434 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 + L++LGV V ++P + + + A + Q ++ Y F LVS Sbjct: 435 SVITTFEKGLNELGVYTDGVGTTPF-SGVGVTTGLTEGAAEAFQLGIEHGYKRFTDLVSS 493 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI--RKIKDWN 253 SR IP + ++ GR+WTG +A +GL+D +G ++ + L +++ Sbjct: 494 SREIPAAQMDNIAQGRVWTGQDALNLGLVDNIGDFDDAVKLAAELAELTDYNLYWVEEPL 553 Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 P + ++ N SL D + Sbjct: 554 SPAQQFIQNIMNQVKISLGVDVSAYLPAALQP 585 Score = 85.8 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 43/291 (14%), Positives = 101/291 (34%), Gaps = 39/291 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARI-AIRGQIEDSQ-------- 51 + FV + + + S+ + VYF S A I + G I + Sbjct: 19 ITFVRLALTNLFFLASIAIIYFVYFHAESEAPSVPTKSALILNLSGPIVEQPNYINPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 ++++ + D++ + L+++ P + I +A+ + Sbjct: 79 FTGSLLGQDLPRENVLYDIVDTLRYAKDDENVSGLVLALGDLPETNLTKLRYIAKALNEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + V + + Y ++ ++ + A V G Y K L+KL V+ Sbjct: 139 KASGKPVYAVGDFYNQSQYYLASYADKVYLAPDGAVMLKGYSAYSLYYKTLLEKLNVNTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL------ 205 + K+ PF +++ +A + + + F ++ +R I D Sbjct: 199 VFRVGTYKSAIEPFVRDDMSAEAKESASRWLGQLWGAFTDDIAANRQISTDTLNLSMEQF 258 Query: 206 --VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDW 252 +L + A + +GL+D + +++V + + + D+ Sbjct: 259 LALLKENNGDLAALSLNIGLVDQLATRQQVRTEMIDVFGSNGEDSYNYIDY 309 >gi|226314459|ref|YP_002774355.1| signal peptide peptidase [Brevibacillus brevis NBRC 100599] gi|226097409|dbj|BAH45851.1| putative signal peptide peptidase [Brevibacillus brevis NBRC 100599] Length = 321 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 71/276 (25%), Positives = 130/276 (47%), Gaps = 29/276 (10%) Query: 5 LKKIKTRYVMLSLVTLTVVY---------------FSWSSHVEDN--SPHVARIAIRGQI 47 KK ++L++ L ++ F+W +V + + ++ + G I Sbjct: 3 RKKWVALVIVLAVFLLGLLVEGIYGTYTDLVDHPGFAWEENVVSGYGNSKIVQLFVNGTI 62 Query: 48 EDSQE----------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-- 95 Q L E++ RI D+ AL++ + SPGG A + + R + ++K Sbjct: 63 SGQQNSAGVPSMTELLTEQLRRIEEDELVKALVLRIDSPGGEVVATDELHRRLLRLKQVR 122 Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 P++ + AAS GY ++ + I A +L GS+GV+F +KLGV ++ Sbjct: 123 NLPIVVSMGSTAASGGYYLATTGDAIFANPNTLTGSLGVIFNLFNYSEAANKLGVHQYAI 182 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215 KS K SP + + Q +V+ SY+ FV ++ + RN+ + L ++DGR+++G Sbjct: 183 KSGRFKDIGSPSRPLTDPERHIFQTLVNESYNNFVDVIVKGRNLSRQRVLEIADGRVYSG 242 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 +AK++GLID G EE + +L ++ I+ Sbjct: 243 EQAKRMGLIDEFGDLEEATRYALSLSGEKEAMVIRY 278 >gi|238786163|ref|ZP_04630115.1| Protease 4 [Yersinia bercovieri ATCC 43970] gi|238712932|gb|EEQ04992.1| Protease 4 [Yersinia bercovieri ATCC 43970] Length = 281 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 119/243 (48%), Gaps = 5/243 (2%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEM 106 L +I + D A+I+ ++SPGGS A E I + ++ KP++ + M Sbjct: 10 VGGDALAAQIRQARLDPKIKAVILRVNSPGGSVSASELIRSELSALRAANKPLVVSMGGM 69 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 AAS GY IS +N IVA+ ++L GSIG+ + L+ +GV V +SP+ S Sbjct: 70 AASGGYWISTPANYIVASPSTLTGSIGIFGVINTFQNSLESIGVHTDGVATSPLAD-ISI 128 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 + P+ QMMQ +++ Y F+ LV+ SR+ ++ ++ G +W G +AK GL+D Sbjct: 129 TKNLPPEFSQMMQINIENGYKTFIDLVATSRHKTVEQVDQIAQGHVWIGFDAKSNGLVDQ 188 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 +G ++ + + L ++ + + P DL +S+ ++ +P Q + Sbjct: 189 LGDFDDAVKKVAELAKLKTWQLNWFIDEPS---LSDLIFGQMSASVQAMLPTAIQAWLPA 245 Query: 287 LWA 289 + Sbjct: 246 PLS 248 >gi|45441763|ref|NP_993302.1| protease 4 [Yersinia pestis biovar Microtus str. 91001] gi|162421479|ref|YP_001606775.1| protease 4 [Yersinia pestis Angola] gi|229894836|ref|ZP_04510016.1| protease IV (signal peptide peptidase) [Yersinia pestis Pestoides A] gi|45436625|gb|AAS62179.1| protease IV [Yersinia pestis biovar Microtus str. 91001] gi|162354294|gb|ABX88242.1| signal peptide peptidase SppA, 67K type [Yersinia pestis Angola] gi|229702309|gb|EEO90328.1| protease IV (signal peptide peptidase) [Yersinia pestis Pestoides A] Length = 616 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 18/273 (6%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 + +A + G I D L +I + D A+I+ ++SPGGS Sbjct: 317 TPAPQQGEQIAVLFANGAIIDGPQPPGNVGGDTLAAQIRQARLDPKIKAVILRVNSPGGS 376 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + ++ KP++ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 377 VSASELIRAELAALRAAHKPLVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 436 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L +GV V +SP+ S + P+ QMMQ +++ Y F+ LV+ SR+ Sbjct: 437 NTFQNSLASIGVHTDGVATSPLADV-SLTKALPPEFSQMMQINIENGYKTFIDLVATSRH 495 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256 ++ ++ G +W G +AK GL+D +G ++ + L + + D Sbjct: 496 KTPEQVDQIAQGHVWIGLDAKSNGLVDQLGDFDDAVKKAAELAKLKTWQLNWFVD----- 550 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 DL +S+ + +P QT + + Sbjct: 551 EPSLSDLILGQMSASVHAMLPAAIQTWLPAPLS 583 Score = 82.4 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 47/293 (16%), Positives = 98/293 (33%), Gaps = 44/293 (15%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIE 55 +YF + S + + + G I D +++E Sbjct: 41 IYFQFQSKPVEPVKGALLVNLSGVIVDQPAINNKLRQWGRELLGASSNRLQENSLFDIVE 100 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 I DD+ L++SLS G+ + + I +A+++ ++ I V + Y + Sbjct: 101 TIRLAKDDDNINGLVLSLSDLTGADQSSLQYIGKALREFRDTGKKIYAVGDSYNQTQYYL 160 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172 + +N I + V G Y K L+ L V+ + K+ P ++++ Sbjct: 161 ASFANKIYLSPQGAVDLHGFASNNLYYKSLLENLKVTTNIFRVGTYKSAVEPMIRNDMSA 220 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLI 224 A + V + ++ VS +R + ++ L A L+ Sbjct: 221 AAREADSRWVGGLWQNYLTTVSANRRLTPEQLFPGAAGVISGLQVAGGSQAKYALDSKLV 280 Query: 225 DVVGGQEEVWQSLYA------LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 D + + EV +L D + I D+ P + + ++ Sbjct: 281 DQLAARPEVESALVEAFGWNKKTNDFNYISIYDYQPTPAPQQGEQIAVLFANG 333 >gi|319760562|ref|YP_004124500.1| signal peptide peptidase SppA [Candidatus Blochmannia vafer str. BVAF] gi|318039276|gb|ADV33826.1| signal peptide peptidase SppA [Candidatus Blochmannia vafer str. BVAF] Length = 619 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 12/227 (5%) Query: 31 VEDNSPHVARIAIRGQI----------EDSQELIERIERISRDDSATALIVSLSSPGGSA 80 ++N+ +A I I+G I ++ +I + A+I+ ++SPGGS Sbjct: 321 TKNNNNQIAIICIQGTIIHGNNDIAGSTGGDTIVRKIRNARFNPKIKAIILRVNSPGGSV 380 Query: 81 YAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 +A E I + I +N KP+I + +AAS GY IS +N I+A+ ++L GSIGV Sbjct: 381 HASELIRQEIIATRNSGKPIIVSMGNIAASGGYWISTPANFIIASNSTLTGSIGVFGIIN 440 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + LD +GV V +SP+ S + + MMQ V++SY +F++ V++ R Sbjct: 441 TFEDSLDTIGVHSDEVNTSPVANL-SIAKALPNEFKNMMQLYVNTSYQYFIKTVAKFRCK 499 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 ++ G IW G +A K GLID +G ++ L Sbjct: 500 TITDIDRVAQGHIWLGYDAIKNGLIDKIGDFDDAINKAAELAHLTEY 546 Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 88/261 (33%), Gaps = 38/261 (14%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIER 56 YF + SP + + G I D E+I Sbjct: 42 YFHIKNTKNTTSPSALILNLTGIIVDKPTTYTKFQKFSKQLFNINQSHIQENSLFEIIHI 101 Query: 57 IERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 + + D + T LI+ L + G + + E I +A+ + KN I + + YL++ Sbjct: 102 LRQAKNDTNITGLILLLKNFSGGSQSSLEYIGKALYEFKNTGKPIYAISDHYDQIQYLLA 161 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPK 173 +N I V G+ Y + L L ++ + K+ PF ++P+ Sbjct: 162 SYANKIYITPQGEVNLRGISTHKLYYQSLLKNLKINTHVFRVGSYKSAIEPFTRDNMSPQ 221 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLID 225 + + +++++S +RNI + L + + T A + +D Sbjct: 222 VRDEENIWIHQLWDQYLKIISLNRNITTQQIFPGINKIIDELYEMQGDTAYYALQKKWVD 281 Query: 226 VVGGQEEVWQSLYALGVDQSI 246 + ++ ++ Sbjct: 282 EISSYSDIENTMKKTFGTNKN 302 >gi|89255457|ref|YP_512818.1| peptidase [Francisella tularensis subsp. holarctica LVS] gi|115313986|ref|YP_762709.1| protease [Francisella tularensis subsp. holarctica OSU18] gi|167009293|ref|ZP_02274224.1| S49 family protease [Francisella tularensis subsp. holarctica FSC200] gi|169656469|ref|YP_001427444.2| S49 family peptidase [Francisella tularensis subsp. holarctica FTNF002-00] gi|254366865|ref|ZP_04982903.1| peptidase, S49 family [Francisella tularensis subsp. holarctica 257] gi|254368438|ref|ZP_04984455.1| serine peptidase [Francisella tularensis subsp. holarctica FSC022] gi|290953102|ref|ZP_06557723.1| S49 family peptidase [Francisella tularensis subsp. holarctica URFT1] gi|295313688|ref|ZP_06804271.1| S49 family peptidase [Francisella tularensis subsp. holarctica URFT1] gi|89143288|emb|CAJ78449.1| Peptidase [Francisella tularensis subsp. holarctica LVS] gi|115128885|gb|ABI82072.1| S49 family protease [Francisella tularensis subsp. holarctica OSU18] gi|134252693|gb|EBA51787.1| peptidase, S49 family [Francisella tularensis subsp. holarctica 257] gi|157121332|gb|EDO65533.1| serine peptidase [Francisella tularensis subsp. holarctica FSC022] gi|164551537|gb|ABU60488.2| peptidase, S49 family [Francisella tularensis subsp. holarctica FTNF002-00] Length = 307 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 114/254 (44%), Gaps = 16/254 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSA 80 S S ++ PH+A I + G I D + + + ++ + S +IV ++SPGGS Sbjct: 46 SLFSSSKELVPHIALIKVNGVIADDAEANAERINQSLDDAYANKSVKGVIVEINSPGGSP 105 Query: 81 YAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 + I+ +Q ++++ P+ + AS GY I+ + I A + ++ GSIGV+ Sbjct: 106 VQSDEIYSHMQYLQHKYPTIPMYAVCTNVCASGGYYIAAGAKDIYANKMTITGSIGVIGS 165 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 +DKLG+ ++ S K PFS P+ ++++D ++ F+ V +SR Sbjct: 166 GFGFTGLMDKLGIERRTYTSGENKDFLDPFSPQKPEQTAQFKELLDQTHQVFIAAVEKSR 225 Query: 198 NIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 G ++G +A+++GLID +++ + + I D+ P Sbjct: 226 GDRLKDKNIDTTFSGEPFSGIQAQQMGLIDGFASVDQIRNEKF------NNIDIVDYTRP 279 Query: 256 KNYWFCDLKNLSIS 269 ++ L S Sbjct: 280 LDFLTAVSHKLGNS 293 >gi|115380005|ref|ZP_01467055.1| signal peptide peptidase SppA, 67K type [Stigmatella aurantiaca DW4/3-1] gi|310820408|ref|YP_003952766.1| Signal peptide peptidase SppA, 36K type [Stigmatella aurantiaca DW4/3-1] gi|115362984|gb|EAU62169.1| signal peptide peptidase SppA, 67K type [Stigmatella aurantiaca DW4/3-1] gi|309393480|gb|ADO70939.1| Signal peptide peptidase SppA, 36K type [Stigmatella aurantiaca DW4/3-1] Length = 828 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 65/270 (24%), Positives = 125/270 (46%), Gaps = 18/270 (6%) Query: 37 HVARIAIRGQIED---------------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 +A + + G I ++ + + R D + A+++ + S GG Sbjct: 534 RIAIVPVLGTIAGGKSREDPLGATRIAGAETVALALYRAQMDPAVVAIVLRVDSGGGDVL 593 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 A + ++RA+ + K KPVI + ++AAS GY + A++ I A T+L GSIGV + P + Sbjct: 594 ASDLMYRAVLEAKKVKPVIASMGDVAASGGYYAAMAADEIFANPTTLTGSIGVFYLKPAL 653 Query: 142 KPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 K L DKLG++ +++ +P+ + P+ + +Q VD++Y F+ +E+R + Sbjct: 654 KGLLEDKLGITQQTLPRAPLADLLGLWRPWTPEEQRAVQAWVDATYDTFITYAAEARKLE 713 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV--DQSIRKIKDWNPPKNY 258 + L+ GR+W+G +A GL+D +GG E + + G ++ + + + Sbjct: 714 KAQVDTLARGRVWSGKDAHARGLVDRLGGLAEAVAAARSRGGASASEDVEVVVYGEARGF 773 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + + L +QGL Sbjct: 774 LSSLGGEPGVLARLLPEPSSPLPPGLQGLL 803 Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 94/227 (41%), Gaps = 7/227 (3%) Query: 35 SPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93 SP +A + I G + L+ +E ++D+ +++ + GG E + +A+ ++ Sbjct: 301 SPSLALLGISGPDPYLR-LMRFLELATQDERLRGVVLKVEGLGGVDWGRAEELRQAVLRL 359 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + + + GY ++ A++ + A S G+ V ++KLGVS Sbjct: 360 RAAGKKVLALVLSCDDKGYFVASAADRLYALPASSFLINGLSAGVTSVGGTMEKLGVSWD 419 Query: 154 SVKSSPMK--AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K E +++ + + +D+ W+ + V R +P ++ Sbjct: 420 VARVGEYKTAPEQLTRRDMSEAERETLNAWLDTQVDWYEQAVVSERKLPVERLREAWKVG 479 Query: 212 IWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 + A+ +GLID + GQ+E+ Q L L ++++P Sbjct: 480 LIPPPVAQSLGLIDGILQGQKELEQRLEQL--IPGASYAENYSPRDE 524 >gi|51596414|ref|YP_070605.1| protease 4 [Yersinia pseudotuberculosis IP 32953] gi|145598269|ref|YP_001162345.1| protease 4 [Yersinia pestis Pestoides F] gi|186895459|ref|YP_001872571.1| protease 4 [Yersinia pseudotuberculosis PB1/+] gi|51589696|emb|CAH21326.1| protease IV [Yersinia pseudotuberculosis IP 32953] gi|145209965|gb|ABP39372.1| protease IV [Yersinia pestis Pestoides F] gi|186698485|gb|ACC89114.1| signal peptide peptidase SppA, 67K type [Yersinia pseudotuberculosis PB1/+] Length = 616 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 18/273 (6%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 + +A + G I D L +I + D A+I+ ++SPGGS Sbjct: 317 TPAPQQGEQIAVLFANGAIIDGPQTPGNVGGDTLAAQIRQARLDPKIKAVILRVNSPGGS 376 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + ++ KP++ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 377 VSASELIRAELAALRAAHKPLVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 436 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L +GV V +SP+ S + P+ QMMQ +++ Y F+ LV+ SR+ Sbjct: 437 NTFQNSLASIGVHTDGVATSPLADV-SLTKALPPEFSQMMQINIENGYKTFIDLVATSRH 495 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256 ++ ++ G +W G +AK GL+D +G ++ + L + + D Sbjct: 496 KTPEQVDQIAQGHVWIGLDAKSNGLVDQLGDFDDAVKKAAELAKLKTWQLNWFVD----- 550 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 DL +S+ + +P QT + + Sbjct: 551 EPSLSDLILGQMSASVHAMLPAAIQTWLPAPLS 583 Score = 82.4 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 47/293 (16%), Positives = 98/293 (33%), Gaps = 44/293 (15%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIE 55 +YF + S + + + G I D +++E Sbjct: 41 IYFQFQSKPVEPVKGALLVNLSGVIVDQPAINNKLRQWGRELLGASSNRLQENSLFDIVE 100 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 I DD+ L++SLS G+ + + I +A+++ ++ I V + Y + Sbjct: 101 TIRLAKDDDNINGLVLSLSDLTGADQSSLQYIGKALREFRDTGKKIYAVGDSYNQTQYYL 160 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172 + +N I + V G Y K L+ L V+ + K+ P ++++ Sbjct: 161 ASFANKIYLSPQGAVDLHGFASNNLYYKSLLENLKVTTNIFRVGTYKSAVEPMIRNDMSA 220 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLI 224 A + V + ++ VS +R + ++ L A L+ Sbjct: 221 AAREADSRWVGGLWQNYLTTVSANRRLTPEQLFPGAAGVISGLQVAGGSQAKYALDSKLV 280 Query: 225 DVVGGQEEVWQSLYA------LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 D + + EV +L D + I D+ P + + ++ Sbjct: 281 DQLAARPEVESALVEAFGWNKKTNDFNYISIYDYQPTPAPQQGEQIAVLFANG 333 >gi|56476731|ref|YP_158320.1| protease IV [Aromatoleum aromaticum EbN1] gi|56312774|emb|CAI07419.1| Protease IV [Aromatoleum aromaticum EbN1] Length = 613 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 114/237 (48%), Gaps = 10/237 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSL 73 + + HVA + +G I D L I D+ AL++ + Sbjct: 308 YLAVVRATRPEQDDHVAVLVAQGAIIDGSDTQSAVGGDSLAHLIRMAREDERVKALVLRV 367 Query: 74 SSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 SPGGSA+A E I R ++ + KPV+ + +AAS GY I+ + I A+ SL GSI Sbjct: 368 DSPGGSAWASEVIRRELELTREAGKPVVASMSSVAASGGYWIATGAEEIFASPASLTGSI 427 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 G+ +P + LDKLGV+ V + P+ P + P A + +Q ++ Y F+ Sbjct: 428 GIFALFPELAGALDKLGVNTDGVATGPLAGAFDPRRPLEPAAAKTIQLGIEHGYRRFLET 487 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V+++R++ + ++ GR+WTG A K+GL+D +GG E + + + + Sbjct: 488 VAKARDMSATEVDTVARGRVWTGEAATKLGLVDQLGGLEAAVAAAASRAGLKRYETV 544 Score = 70.4 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 76/209 (36%), Gaps = 13/209 (6%) Query: 52 ELIERIERISRDDSATALIVSLS--SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 +L+E +E D AL++ P G + AI + + E Sbjct: 91 DLLEAVEAARDDTRIKALVIETDRLGPTG-LSKLAELRAAIVAFRQSGKPVFARGERFTQ 149 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y ++ A++ + V G+ Y LDKLGV + + KA PF Sbjct: 150 GQYYLASAADEVHVGPDGFVLLQGLARYISYFAEALDKLGVKMHVFRVGEYKAFSEPFTR 209 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW----TGAEA----K 219 ++++ + +D+++ + + SR + +K + TG +A + Sbjct: 210 NDMSEADREASRDLLEGLWTGVREDLIASRRLAPEKLDAYVNAYPAALAATGGDAVSAAR 269 Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 GLID ++E + L A K Sbjct: 270 DAGLIDRASTRDEWRELLKARVGASEDGK 298 >gi|254786960|ref|YP_003074389.1| signal peptide peptidase SppA, 67K type [Teredinibacter turnerae T7901] gi|237686224|gb|ACR13488.1| signal peptide peptidase SppA, 67K type [Teredinibacter turnerae T7901] Length = 618 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 5/235 (2%) Query: 44 RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITE 102 G I S L E I R DDS A+++ + S GGSA+A E I + I + KPV Sbjct: 337 NGVI-GSASLTELIRRARDDDSIAAIVLRIDSGGGSAFASEVIRQEILNTRKSGKPVYIS 395 Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 + MAAS GY ++ A + I A ++L GSIGV P + L+KLGV V ++ + Sbjct: 396 MGSMAASGGYWVASAGDEIWATPSTLTGSIGVWGLIPNLANALNKLGVHSDGVGTTELAD 455 Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVG 222 P ++ A Q++Q ++ Y F+ +V+E+R+ ++ GR+W+G A +G Sbjct: 456 IYHPDRPLSAPAKQLIQSGINDVYDHFLNIVAEARDSDPASVHEIAQGRVWSGEAAASLG 515 Query: 223 LIDVVGGQEEVWQSLYAL--GVDQSIRKIK-DWNPPKNYWFCDLKNLSISSLLED 274 L+D +G + ++ +++IK + P + ++ +S+S L++ Sbjct: 516 LVDKLGTLHDTLDAVAEHIGAGSYRVKQIKRELTPTEEIMHALMQEVSVSGLVDQ 570 Score = 82.4 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 84/235 (35%), Gaps = 14/235 (5%) Query: 52 ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 +L++ I + DD T+++++ GG E + +A++ K I + + Sbjct: 89 DLVDTINHAATDDRITSMVLNLTKFAGGGISKMEELGQALEHFKAAGKPIYAYGDNLSQQ 148 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS-- 168 Y ++ ++ I E V G Y K DKL V + K PF Sbjct: 149 QYFLASFADTIYLNEMGSVLITGFGMYQNYFKDAADKLSVDFHVFRVGQYKDAVEPFMRN 208 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--------GAEAKK 220 +++P + + ++ ++ +V V+ +R + +A + Sbjct: 209 DMSPASREHNSRWLNELWNTYVNRVTGNRQLAPGAIDSYLASLTDANETNEDSQAEKALQ 268 Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRKIKD---WNPPKNYWFCDLKNLSISSLL 272 GL+D + + +V Q L + D + + +L + + L Sbjct: 269 AGLVDKLVSRVDVRQLLAEKVGASDDGETYDAIGYEEYRQATQLELPSGGKTLGL 323 >gi|222478889|ref|YP_002565126.1| signal peptide peptidase SppA, 36K type [Halorubrum lacusprofundi ATCC 49239] gi|222451791|gb|ACM56056.1| signal peptide peptidase SppA, 36K type [Halorubrum lacusprofundi ATCC 49239] Length = 311 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 112/241 (46%), Gaps = 20/241 (8%) Query: 37 HVARIAIRGQI---------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 + A++ + G I + +++E+IE D+ AL+V L++PGG Sbjct: 45 NTAKVTVSGPIRRDTGRPSPLSRAGGATADDVVEQIEAADEDEDVEALVVELNTPGGEVL 104 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + I RA P + + AS GY I+ + + A + SLVGSIGV+ P Sbjct: 105 PSDDIRRAAADF--DGPTLAYATDTCASGGYWIASGCDELWARDASLVGSIGVVGSRPNA 162 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 DKLG+S + + K P E+ + +Q ++D Y FV VSE R++ Sbjct: 163 AGLADKLGISYEQFTAGEYKDAGVPLREIEEDEREYLQGIIDGYYEQFVETVSEGRDMDP 222 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 + ++ R++ G++A ++GL+D +G +++V L L + +I ++ P + Sbjct: 223 EAIRE-TEARVYLGSDAAEIGLVDELGTEDDVEDRLEEL--IDTEPEIHEFTPKRGLAER 279 Query: 262 D 262 Sbjct: 280 L 280 >gi|22126048|ref|NP_669471.1| protease 4 [Yersinia pestis KIM 10] gi|108807515|ref|YP_651431.1| protease 4 [Yersinia pestis Antiqua] gi|108811791|ref|YP_647558.1| protease 4 [Yersinia pestis Nepal516] gi|149365915|ref|ZP_01887950.1| protease IV [Yersinia pestis CA88-4125] gi|165927734|ref|ZP_02223566.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar Orientalis str. F1991016] gi|165939383|ref|ZP_02227931.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar Orientalis str. IP275] gi|166009364|ref|ZP_02230262.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar Antiqua str. E1979001] gi|166210495|ref|ZP_02236530.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar Antiqua str. B42003004] gi|167401415|ref|ZP_02306912.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419969|ref|ZP_02311722.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426564|ref|ZP_02318317.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218929262|ref|YP_002347137.1| protease 4 [Yersinia pestis CO92] gi|229897580|ref|ZP_04512736.1| protease IV (signal peptide peptidase) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229898225|ref|ZP_04513373.1| protease IV (signal peptide peptidase) [Yersinia pestis biovar Orientalis str. India 195] gi|229902086|ref|ZP_04517207.1| protease IV (signal peptide peptidase) [Yersinia pestis Nepal516] gi|270490735|ref|ZP_06207809.1| signal peptide peptidase SppA, 67K type [Yersinia pestis KIM D27] gi|294503792|ref|YP_003567854.1| protease IV [Yersinia pestis Z176003] gi|21959000|gb|AAM85722.1|AE013819_8 protease IV, a signal peptide peptidase [Yersinia pestis KIM 10] gi|108775439|gb|ABG17958.1| protease IV [Yersinia pestis Nepal516] gi|108779428|gb|ABG13486.1| protease IV [Yersinia pestis Antiqua] gi|115347873|emb|CAL20793.1| protease IV [Yersinia pestis CO92] gi|149292328|gb|EDM42402.1| protease IV [Yersinia pestis CA88-4125] gi|165912724|gb|EDR31353.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar Orientalis str. IP275] gi|165920348|gb|EDR37625.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar Orientalis str. F1991016] gi|165991919|gb|EDR44220.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar Antiqua str. E1979001] gi|166207675|gb|EDR52155.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar Antiqua str. B42003004] gi|166961664|gb|EDR57685.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049111|gb|EDR60519.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054440|gb|EDR64252.1| signal peptide peptidase SppA, 67K type [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680982|gb|EEO77077.1| protease IV (signal peptide peptidase) [Yersinia pestis Nepal516] gi|229688791|gb|EEO80859.1| protease IV (signal peptide peptidase) [Yersinia pestis biovar Orientalis str. India 195] gi|229693917|gb|EEO83966.1| protease IV (signal peptide peptidase) [Yersinia pestis biovar Orientalis str. PEXU2] gi|262365774|gb|ACY62331.1| protease IV [Yersinia pestis D182038] gi|270339239|gb|EFA50016.1| signal peptide peptidase SppA, 67K type [Yersinia pestis KIM D27] gi|294354251|gb|ADE64592.1| protease IV [Yersinia pestis Z176003] Length = 616 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 18/273 (6%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 + +A + G I D L +I + D A+I+ ++SPGGS Sbjct: 317 TPAPQQGEQIAVLFANGAIIDGPQPPGNVGGDTLAAQIRQARLDPKIKAVILRVNSPGGS 376 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + ++ KP++ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 377 VSASELIRAELAALRAAHKPLVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 436 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L +GV V +SP+ S + P+ QMMQ +++ Y F+ LV+ SR+ Sbjct: 437 NTFQNSLASIGVHTDGVATSPLADV-SLTKALPPEFSQMMQINIENGYKTFIDLVATSRH 495 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256 ++ ++ G +W G +AK GL+D +G ++ + L + + D Sbjct: 496 KTPEQVDQIAQGHVWIGLDAKSNGLVDQLGDFDDAVKKAAELAKLKTWQLNWFVD----- 550 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 DL +S+ + +P QT + + Sbjct: 551 EPSLSDLILGQMSASVHAMLPAAIQTWLPAPLS 583 Score = 82.0 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 47/293 (16%), Positives = 98/293 (33%), Gaps = 44/293 (15%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIE 55 +YF + S + + + G I D +++E Sbjct: 41 IYFQFQSKPVEPVKGALLVNLSGVIVDQPAINNKLRQWGRELLGASSNRLQENSLFDIVE 100 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 I DD+ L++SLS G+ + + I +A+++ ++ I V + Y + Sbjct: 101 TIRLAKDDDNINGLVLSLSDLTGADQSSLQYIGKALREFRDTGKKIYAVGDSYNQTQYYL 160 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172 + +N I + V G Y K L+ L V+ + K+ P ++++ Sbjct: 161 ASFANKIYLSPQGAVDLHGFASNNLYYKSLLENLKVTTNIFRVGTYKSAVEPMIRNDMSA 220 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLI 224 A + V + ++ VS +R + ++ L A L+ Sbjct: 221 AAREADSRWVGGLWQNYLTTVSANRRLTPEQLFPGAAGVISGLQVAGGSQAKYALDSKLV 280 Query: 225 DVVGGQEEVWQSLYA------LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 D + + EV +L D + I D+ P + + ++ Sbjct: 281 DQLAARPEVESALVEAFGWNKKTNDFNYISIYDYQPTPAPQQGEQIAVLFANG 333 >gi|294614153|ref|ZP_06694074.1| periplasmic serine protease [Enterococcus faecium E1636] gi|291593003|gb|EFF24591.1| periplasmic serine protease [Enterococcus faecium E1636] Length = 341 Score = 127 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 64/276 (23%), Positives = 128/276 (46%), Gaps = 21/276 (7%) Query: 30 HVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSP 76 D++ + ++ + G I + +E+++ + D + + + ++SP Sbjct: 53 EEGDSTQKIVKLTVDGTIAAGGSSGLFASEGYNHENFMEQLKAVEEDPTVKGIFLEVNSP 112 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG Y I + + ++ P+ + MAAS GY IS ++ I A E ++ GSIGV Sbjct: 113 GGGVYESAEIAKKLDTIRKEHDIPMYVSMKNMAASGGYYISAQADKIFATEETVTGSIGV 172 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + L+KLGV +VKS +K + ++Q +DS+Y FVR+VS Sbjct: 173 IMSGLNYSGLLEKLGVEDTTVKSGALKDMGLGTRPETKEEEAVLQAYIDSAYQRFVRIVS 232 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 E RN + ++DGRI+ G +AK+VGL+D +G E+ Q++ + ++ +++ Sbjct: 233 EGRNKSEEAVKKIADGRIYDGVQAKEVGLVDELGFPEDALQAMRKEQKLEDA-ELVEYSS 291 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + + ++ +K ++ + ++ Sbjct: 292 ASSGFASTWLGSKLA-----EFQGLKSSETSQILSI 322 >gi|88859293|ref|ZP_01133933.1| protease IV, a signal peptide peptidase [Pseudoalteromonas tunicata D2] gi|88818310|gb|EAR28125.1| protease IV, a signal peptide peptidase [Pseudoalteromonas tunicata D2] Length = 624 Score = 127 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 122/253 (48%), Gaps = 12/253 (4%) Query: 36 PHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 VA + +G I D + + DD A+++ + S GGS +A E I Sbjct: 325 EKVAVVVAKGNIVDGKRKAGEIGGDSTSALLRKARLDDKVKAVVLRIDSGGGSMFASELI 384 Query: 87 FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + +K KPVI + +AAS GY I+ A+N I AA +++ GSIG+ + L Sbjct: 385 RAEVLALKAAGKPVIASMSSVAASGGYWIASAANEIWAAPSTITGSIGIFGTVMTFENSL 444 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 +LGV V ++ M SP E+NP+ M+Q ++ Y+ F+ +V+E+R + ++ Sbjct: 445 ARLGVYSDGVSTTEMAG-FSPMRELNPQLGNMIQMSIERGYNRFLTIVAEARGMSIEEVD 503 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 ++ GR+W +AK++GL+D +G +++ ++ L + + +K Sbjct: 504 HIAQGRVWIATQAKELGLVDHLGNKQDAIEAAAKLASL-DHYDVITVEQTLSPRELFMKE 562 Query: 266 LSISSLLEDTIPL 278 ++ ++ I + Sbjct: 563 FLSNAHVQSLIAI 575 >gi|261378542|ref|ZP_05983115.1| signal peptide peptidase SppA [Neisseria cinerea ATCC 14685] gi|269145092|gb|EEZ71510.1| signal peptide peptidase SppA [Neisseria cinerea ATCC 14685] Length = 328 Score = 127 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 73/290 (25%), Positives = 132/290 (45%), Gaps = 21/290 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57 K I L L+ L F E N+PH A + + G+I + ++ ++++ Sbjct: 45 KNIWRAVGTLILIALLAGIFRKDETALRLEGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLI 114 E ++ A A+I+ +SPGGS F I+++K + P I +M AS Y I Sbjct: 105 EAAYKNPQAKAIIIRANSPGGSPVVSNTAFEEIRRLKAQHPNIPVYLVAEDMCASGCYYI 164 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I A +S+VGSIGV+ ++K+GV + + K PFS P+ Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATELMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++ ++++ + F++ V R + + GR++TGA+A+KVGLID +G Sbjct: 225 SKIWEEMLTGIHGEFIKAVKAGRGSRLKFQQYPDVFSGRVYTGADAQKVGLIDGLGNVYS 284 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282 V + + D+ + F L + + L+ + + QT Sbjct: 285 VAR------NVVKAPDLVDYTRQDD--FGTLLGRRLGAELKAGVREVLQT 326 >gi|167623955|ref|YP_001674249.1| signal peptide peptidase SppA [Shewanella halifaxensis HAW-EB4] gi|167353977|gb|ABZ76590.1| signal peptide peptidase SppA, 67K type [Shewanella halifaxensis HAW-EB4] Length = 613 Score = 127 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 65/269 (24%), Positives = 125/269 (46%), Gaps = 16/269 (5%) Query: 35 SPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + V I +G I + E + + DDS A+++ + SPGGSA+A E Sbjct: 324 NDKVGIIVAKGNILNGSQPAGQIGGKSTSELLRQARFDDSVKAVVLRVDSPGGSAFASEE 383 Query: 86 IFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I + + +K KP+I + AAS GY IS +++ I A T+L GSIG+ + Sbjct: 384 IRQEVLAIKAANKPIIVSMGSYAASGGYWISASADYIYATPTTLTGSIGIFGMVTTFEDS 443 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L +GV V +S S ++P+ ++Q ++ Y F+ LV+ R++ D Sbjct: 444 LASIGVHTDGVGTSEWAG-FSVTKGLSPQIQAIIQRHIERGYQDFISLVASERDMSLDYV 502 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPKNYWFCD 262 ++ GR+WTG +A ++GL+D +G ++ + + I+ P+ + + Sbjct: 503 DSIAQGRVWTGRKALELGLVDGLGELQDAVTKAAQMAKLEQYDTEVIERELSPQEQFIQE 562 Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 + + S + + + + ++ + + W Sbjct: 563 MLASASSYMPQ---SFAQSSVLETVLSQW 588 Score = 92.0 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 41/287 (14%), Positives = 92/287 (32%), Gaps = 39/287 (13%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------- 51 L+K+ + ++ + +V + VE + + G I D + Sbjct: 22 LRKLFLNLIFFGVIAIIIVSLTTDDGVEVEDGSALVLNLSGVIVDQKRQVDPIEAAMKSG 81 Query: 52 ------------ELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRKP 98 +++ IE + D +++ L G+ ++I AI+ K Sbjct: 82 NEADGSGEILLADVLTVIENAATDTRINQMVLDLGMLHGTGISKLQSIGNAIESFKATGK 141 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 + Y ++ ++ + V G+ Y K LDKL ++ + Sbjct: 142 TVVANGNWYGQNQYFLASFADKVYLNPQGSVEIEGLARYRLYFKSALDKLKINAHVFRVG 201 Query: 159 PMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLS 208 K+ PF +++ A + +++ + + V+ +R I + L Sbjct: 202 TFKSAVEPFIRDDMSDAAKEANLVLLNDLWQSYADTVAANRGIDSNNLSLSADNYLAELD 261 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEE---VWQSLYALGVDQSIRKIKDW 252 + A + +D + +E V D K D+ Sbjct: 262 KANGKSAEMALNMKWVDGLKTTDEFRLVMVDAVGKSADGDSYKHIDF 308 >gi|162456619|ref|YP_001618986.1| protease IV [Sorangium cellulosum 'So ce 56'] gi|161167201|emb|CAN98506.1| Protease IV [Sorangium cellulosum 'So ce 56'] Length = 896 Score = 127 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 70/274 (25%), Positives = 112/274 (40%), Gaps = 18/274 (6%) Query: 35 SPHVARIAIRGQIEDSQE---------------LIERIERISRDDSATALIVSLSSPGGS 79 SP VA + + G + D + + + R D S A+++ + + GGS Sbjct: 575 SPKVALVYLDGDMIDGESRSIPFVGVKLAGSYTVAGALRRAREDQSVRAVVLRVETGGGS 634 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A + I R KP++ + AAS GY S A I A+ +S+ GSIGV + Sbjct: 635 TLAADVILREAILTARVKPLVVSMGSSAASGGYYASVAGAPIFASRSSITGSIGVFYGKV 694 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 V L KLGVSI++ +SSP S + + + V Y FV + E+R++ Sbjct: 695 DVTGLLQKLGVSIETFRSSPRADAESLYRPYTDDEREQLGVKVKQFYDRFVARIVENRHM 754 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 ++ L G++WTGA+A + LID +GG + LG I+ Sbjct: 755 KAEEVDALGRGQVWTGAQALERRLIDRLGGLRQAIAEARRLGQLPDDAPIQSLPEEDTSL 814 Query: 260 FC---DLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 L S + E + + A+ Sbjct: 815 LGYALGLVGFSAQAQGELARATIPPVMLDAARAL 848 Score = 81.2 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 87/244 (35%), Gaps = 8/244 (3%) Query: 21 TVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSS-PG 77 V S+S V R+ + + L++++ R++ D + + + L + P Sbjct: 328 GVALRSFSEPGVRLPARVVRVRLDSTPGVRRHTRLLQQLWRLAEDPEVSGVALVLRAEPA 387 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 S E + AI+ +++ + E A + +++ I + G+ Sbjct: 388 SSLAHAEEVSDAIRNLRSHGKKVLCHLEDAGGRSLHVCSSADAIAMNPAGGLRFAGMSSS 447 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK--AVQMMQDVVDSSYHWFVRLVSE 195 Y Y L+KLGV V+ K F+ Q ++D F+ VS Sbjct: 448 YFYFGGLLNKLGVQADIVRIGAHKLAAEQFARETSTRVGKDDHQALLDQLSDAFLAEVSA 507 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE---VWQSLYALGVDQSIRKIKDW 252 R IP + + EA++ GL+D++ +E V + D Sbjct: 508 GRRIPVPELERRIARGPFLAQEARQSGLVDMLAYDDELGRVIDEVMGRASRVVDDDPPDE 567 Query: 253 NPPK 256 P + Sbjct: 568 APER 571 >gi|110597071|ref|ZP_01385360.1| signal peptide peptidase SppA, 67K type:signal peptide peptidase SppA, 36K type [Chlorobium ferrooxidans DSM 13031] gi|110341262|gb|EAT59727.1| signal peptide peptidase SppA, 67K type:signal peptide peptidase SppA, 36K type [Chlorobium ferrooxidans DSM 13031] Length = 602 Score = 127 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 109/268 (40%), Gaps = 14/268 (5%) Query: 31 VEDNSPHVARIAIRGQIE--------------DSQELIERIERISRDDSATALIVSLSSP 76 + +A I + G I D + L ++ D AL++ + SP Sbjct: 296 KGEGDERIALITLSGPIVRTAGESALGMGEGVDVESLKHSLDAALDDKKVKALVLRIDSP 355 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GG A A + + + +KP++ + +AAS GY+ + A + A+ ++ GSIGV Sbjct: 356 GGDALASAEMLQMLDSAAVKKPLVVSMSGVAASGGYMAALAGKTVFASPLTITGSIGVYA 415 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 P + + K G+ V + SPF ++ +A Q Y F+ V+ S Sbjct: 416 LKPEISALVAKTGLGRDVVTRGRLADANSPFKPLDKEAYQKFVAASGEIYDDFIGKVARS 475 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R +P ++ GR+W+G A K GL+D GG + + L + + P+ Sbjct: 476 RRMPLTAVDSVAGGRVWSGTRALKAGLVDRTGGLFDAIHAARLLAKMDMSKNPRIILYPE 535 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + ++ + L I + ++ Sbjct: 536 QKSWIEMLVQGNRAGLPGMIGAAFKKQL 563 Score = 56.5 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 82/192 (42%), Gaps = 3/192 (1%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 Q+L+ ++ + D+ L++ + S + +I+KV++R +T Sbjct: 74 SLQDLLFILDHAAADERVKELLLEIGGLHASPAKISELRSSIEKVRSRGKKVTAFLSSPE 133 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 + YL++ A + IV + G+ + + L K+G+ ++ + K+ PF+ Sbjct: 134 DSDYLLASACDAIVMERGGYLLLDGLKAETLFYTTPLGKIGIRFQAAQWKQYKSGIEPFT 193 Query: 169 EV--NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLID 225 + + + + ++D Y ++ S R I D + D + + + AK GL+D Sbjct: 194 RTGASREYFEQIGGLLDEVYDDYLGYASRRRGISRDSLSGIIDRIALISDSRAKTFGLVD 253 Query: 226 VVGGQEEVWQSL 237 E+ ++L Sbjct: 254 SAASSWELKRAL 265 >gi|294669763|ref|ZP_06734829.1| hypothetical protein NEIELOOT_01663 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308329|gb|EFE49572.1| hypothetical protein NEIELOOT_01663 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 351 Score = 127 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 62/264 (23%), Positives = 108/264 (40%), Gaps = 15/264 (5%) Query: 32 EDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + + H A I + G I + L + +E + +I+ +SPGGS Sbjct: 93 KQSKEHTAVIRLNGVIGGGYQDQVEMLRDGLEAAYANGKVKGIIIRANSPGGSPVISNTA 152 Query: 87 FRAIQKVKNRKPVI---TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 F ++++K I +M AS Y I+ A++ I A +SLVGSIGV+ Sbjct: 153 FEEVRRLKAEHKDIPLYVVTEDMCASGCYYIAAAADKIYADPSSLVGSIGVIGGSFDFTE 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 +DK+GV + + K PFS P+ + Q +++ + F++ V R Sbjct: 213 LMDKIGVKRRLKTAGSNKGMGDPFSPETPEQQAIWQQMLNDIHGEFIKAVKSGRGSRLKD 272 Query: 204 TL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + GR++TG EAKK GLID G V + + ++ D+ P ++ Sbjct: 273 NDPEIFSGRVYTGLEAKKNGLIDDFGNIYSVARDVVQ------APELVDYTPEEDDLARA 326 Query: 263 LKNLSISSLLEDTIPLMKQTKVQG 286 + + ++ G Sbjct: 327 ISRRLNGEVQNQVREGLQNLAKPG 350 >gi|194333353|ref|YP_002015213.1| signal peptide peptidase SppA, 36K type [Prosthecochloris aestuarii DSM 271] gi|194311171|gb|ACF45566.1| signal peptide peptidase SppA, 36K type [Prosthecochloris aestuarii DSM 271] Length = 596 Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 60/279 (21%), Positives = 116/279 (41%), Gaps = 20/279 (7%) Query: 29 SHVEDNSPHVARIAIRGQIE--------------DSQELIERIERISRDDSATALIVSLS 74 + +A I I G I D Q L E ++ ++S A+++ + Sbjct: 292 PYKPGTKDGIAVITISGVIVQSAGDMPGGTEPGSDEQSLREALDAALDEESVKAIVLRID 351 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGG A A + + + +KP++ + +AAS GY+ + A++ I A ++ GSIGV Sbjct: 352 SPGGDALASANMLQMLDSANVQKPIVASMSGVAASGGYMAALAADSIFADPLTVTGSIGV 411 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 P ++ +K+G+ + V + F ++ + Y F+ V+ Sbjct: 412 YALKPNIQGLQEKIGLRREVVTRGKNADAYTLFKPLDEDGFAKFMETTGWIYDDFINKVA 471 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS--IRKIKDW 252 E R++ ++ ++ GRIW+G A GL+D GG E ++ + S +K + Sbjct: 472 EHRDMKPEEVDAVAGGRIWSGKAAVTAGLVDRTGGLREAVEAAQRMAGIDSSLAPTLKFY 531 Query: 253 NPPKNYWFCDLKNLSI--SSLLEDTIP--LMKQTKVQGL 287 K L+ + +L +P + + + Sbjct: 532 QGRKGMMDYILEGGVLTPGTLFGKKLPESSITARSLDTI 570 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 101/248 (40%), Gaps = 21/248 (8%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI------------------EDSQEL 53 +++L L ++ ++ + + G++ Q+L Sbjct: 16 FIILFLAAGVGIFRMITARQSLPEKFALVVTLSGELKETADPQPPLPLLPDMRSLSLQDL 75 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 I +E +D+ T +++ + + ++ + AIQ+ +T A Sbjct: 76 IFLLEDAGKDERVTQVVLDIDAIRFASAQIRQLQEAIQRTSASGTPVTGFLHAAGDQDLW 135 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV--N 171 ++ A + ++A + G+ + + L+K+GVS ++ + K+ P++ + Sbjct: 136 LASACDTLIAERGNQFLLDGLRAEMLFYAGTLEKIGVSFQAAQWKAWKSGIEPYTRENAS 195 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLIDVVGGQ 230 P+ ++ + ++D Y + VS+ R I + + D + + +A+++ L+D V G Sbjct: 196 PEYLEQIGTMLDGIYDDYTAYVSQQRGISQEAYKNIIDEKTVVSAEQARQLRLVDRVSGF 255 Query: 231 EEVWQSLY 238 E ++L Sbjct: 256 WEYTENLK 263 >gi|57241950|ref|ZP_00369890.1| protease IV (PspA) [Campylobacter upsaliensis RM3195] gi|57017142|gb|EAL53923.1| protease IV (PspA) [Campylobacter upsaliensis RM3195] Length = 293 Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 72/277 (25%), Positives = 132/277 (47%), Gaps = 7/277 (2%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63 ++ I T + + L + FS SS V ++ RI ++G+I D+ ++E+I D Sbjct: 14 IISYINTYFKTFLFLLLLIWLFSPSSSVSIA--NLERIDLKGEILDTGAVLEKIINAKND 71 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 + ++ + SPGG+ + AI+ +K +KPVI+ V AS YL A + I A Sbjct: 72 PNIKGVLFFIDSPGGAFAPSMELALAIKDLKAQKPVISYVAGTMASGSYLAGVAVDKIYA 131 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 + +GSIGV+ Q + K+GV +++K+ K + E + + +Q +++ Sbjct: 132 NPAAFIGSIGVIAQGMNISELAQKIGVKEQTIKAGTFKEAGTFTREWSEEERAYLQRLIN 191 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 +SY FV V++ R + D+ +D R++ EAK +GLID + E+ + L L Sbjct: 192 NSYMLFVEFVAKERGLKVDEKEKWADARVFLANEAKNLGLIDSLSNYEQAKKELEILSKV 251 Query: 244 -----QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 + KI + N + +LL+++ Sbjct: 252 VNPVWKEADKIDQFLEKLNQQSVQFFSTLSKNLLQNS 288 >gi|153948435|ref|YP_001400955.1| protease 4 [Yersinia pseudotuberculosis IP 31758] gi|152959930|gb|ABS47391.1| signal peptide peptidase SppA, 67K type [Yersinia pseudotuberculosis IP 31758] Length = 616 Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 18/273 (6%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 + +A + G I D L +I + D A+I+ ++SPGGS Sbjct: 317 TPAPQQGEQIAVLFANGAIIDGPQTPGNVGGDTLAAQIRQARLDPKIKAVILRVNSPGGS 376 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + ++ KP++ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 377 VSASELIRAELAALRAAHKPLVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 436 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L +GV V +SP+ S + P+ QMMQ +++ Y F+ LV+ SR+ Sbjct: 437 NTFQNSLASIGVHTDGVATSPLADV-SLTKALPPEFSQMMQINIENGYKTFIDLVATSRH 495 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPK 256 ++ ++ G +W G +AK GL+D +G ++ + L + + D Sbjct: 496 KTPEQVDQIAQGHVWIGLDAKSNGLVDQLGDFDDAVKKAAELAKLKTWQLNWFVD----- 550 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 DL +S+ + +P QT + + Sbjct: 551 EPSLSDLILGQMSASVHAMLPAAIQTWLPAPLS 583 Score = 82.0 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 47/293 (16%), Positives = 98/293 (33%), Gaps = 44/293 (15%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIE 55 +YF + S + + + G I D +++E Sbjct: 41 IYFQFQSKPVEPVKGALLVNLSGVIVDQPAINNKLRQWGRELLGASSNRLQENSLFDIVE 100 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 I DD+ L++SLS G+ + + I +A+++ ++ I V + Y + Sbjct: 101 TIRLAKDDDNINGLVLSLSDLTGADQSSLQYIGKALREFRDTGKKIYAVGDSYNQTQYYL 160 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172 + +N I + V G Y K L+ L V+ + K+ P ++++ Sbjct: 161 ASFANKIYLSPQGAVDLHGFASNNLYYKSLLENLKVTTNIFRVGTYKSAVEPMIRNDMSA 220 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLI 224 A + V + ++ VS +R + ++ L A L+ Sbjct: 221 AAREADSRWVGGLWQNYLTTVSANRRLTPEQLFPGAAGVISGLQVAGGSQAKYALDSKLV 280 Query: 225 DVVGGQEEVWQSLYA------LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 D + + EV +L D + I D+ P + + ++ Sbjct: 281 DQLAARPEVESALVEAFGWNKKTNDFNYISIYDYQPTPAPQQGEQIAVLFANG 333 >gi|300723417|ref|YP_003712720.1| protease IV, a signal peptide peptidase [Xenorhabdus nematophila ATCC 19061] gi|297629937|emb|CBJ90557.1| protease IV, a signal peptide peptidase [Xenorhabdus nematophila ATCC 19061] Length = 629 Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 135/290 (46%), Gaps = 22/290 (7%) Query: 15 LSLVTLTVVYFSWSSHVEDNSP-HVARIAIRGQI---------EDSQELIERIERISRDD 64 + +++ N+ ++A I G I DS L+E++ + Sbjct: 308 FNYISIYDYIAQNPVQESSNNDSNIAVIIAEGAILEGKQSSGVVDSDALVEQLREARHNP 367 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV--------ITEVHEMAASAGYLISC 116 + A+++ ++SPGGS A E I + + K + + +AAS GY IS Sbjct: 368 NIKAIVLRVNSPGGSIGASELIRAELVAARYDKENNGKNAKPVVVSMGGLAASGGYWIST 427 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 ++ I+A +L GSIGV + L+ +GV+ + ++P+ + +N Sbjct: 428 PADYIIADPNTLTGSIGVFGVLQTFEKTLNYIGVNADGISTTPLADISAT-KGLNQAVSD 486 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 ++Q ++SSY+ F+ LV+++RN P ++ ++ GR+W G +AKK GL+D +G ++ + Sbjct: 487 VIQLSIESSYNKFIALVAKARNKPVNEIDNMAQGRVWDGLDAKKQGLVDQLGDFDDAVKK 546 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 L + + DW P+ F + + +++ +P M Q+ + Sbjct: 547 AAELANIKHVS--LDWMQPE-LSFSEKIMVGLTTSAHAFLPNMMQSMLPA 593 Score = 75.8 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 35/246 (14%), Positives = 91/246 (36%), Gaps = 11/246 (4%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQKVKNRKPVITEVHEMAASA 110 ++++ I R D T +++ L+ G+ I +AI + K + +++ Sbjct: 99 DVVDSIRRAKNDPKITGMVLKLNEFTGADQPSIKYIGKAINEFKTTGKPVFAINDHYTQP 158 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168 Y ++ +N I + +V G Y K LD L VS + K+ P + Sbjct: 159 QYYLASFANEIYLSPQGVVDLHGFSTNQLYYKSLLDTLKVSTHIFRVGTYKSAVEPMLRN 218 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKK 220 ++ +A + ++ ++ ++ ++ +R I D+ L A + Sbjct: 219 NMSEEAREADSLWLNRMWNNYLSTIAINRGISADQVFPGATQFIEKLHKSGGDFALYAYQ 278 Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 L+ + + + + + +K ++ +Y + S ++ + + + Sbjct: 279 NKLVTHIEPRNVIEKKMTDTFGWNEEQKHFNYISIYDYIAQNPVQESSNNDSNIAVIIAE 338 Query: 281 QTKVQG 286 ++G Sbjct: 339 GAILEG 344 >gi|118496733|ref|YP_897783.1| S49 family serine peptidase [Francisella tularensis subsp. novicida U112] gi|208779996|ref|ZP_03247339.1| peptidase, S49 (protease IV) family [Francisella novicida FTG] gi|254372099|ref|ZP_04987592.1| S49 family protease [Francisella tularensis subsp. novicida GA99-3549] gi|254375246|ref|ZP_04990726.1| peptidase [Francisella novicida GA99-3548] gi|118422639|gb|ABK89029.1| serine peptidase, S49 family [Francisella novicida U112] gi|151569830|gb|EDN35484.1| S49 family protease [Francisella novicida GA99-3549] gi|151572964|gb|EDN38618.1| peptidase [Francisella novicida GA99-3548] gi|208744000|gb|EDZ90301.1| peptidase, S49 (protease IV) family [Francisella novicida FTG] Length = 307 Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 114/254 (44%), Gaps = 16/254 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSA 80 S S ++ PH+A I + G I D + + + ++ + S +IV ++SPGGS Sbjct: 46 SLFSSSKELVPHIALIKVNGVIADDAEANAERINQSLDDAYANKSVKGVIVEINSPGGSP 105 Query: 81 YAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 + I+ +Q ++++ P+ ++ AS GY I+ + I A + ++ GSIGV+ Sbjct: 106 VQSDEIYSHMQYLQHKYPTIPMYAVCTDVCASGGYYIAAGAKDIYANKMTITGSIGVIGS 165 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 +DKLG+ ++ S K PFS P+ + ++D ++ F+ V +SR Sbjct: 166 GFGFTGLMDKLGIERRTYTSGENKDFLDPFSPQKPEQTAQFKKLLDQTHQVFIAAVEKSR 225 Query: 198 NIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 G ++G +A+++GLID +++ + + I D+ P Sbjct: 226 GDRLKDKNIDTTFSGEPFSGIQAQQMGLIDGFASVDQIRNEKF------NNIDIVDYTRP 279 Query: 256 KNYWFCDLKNLSIS 269 ++ L S Sbjct: 280 LDFLTAVSHKLGNS 293 >gi|56708744|ref|YP_170640.1| peptidase [Francisella tularensis subsp. tularensis SCHU S4] gi|110671216|ref|YP_667773.1| peptidase [Francisella tularensis subsp. tularensis FSC198] gi|134302771|ref|YP_001122739.1| signal peptidase [Francisella tularensis subsp. tularensis WY96-3418] gi|187932300|ref|YP_001892285.1| serine peptidase, S49 family [Francisella tularensis subsp. mediasiatica FSC147] gi|224457951|ref|ZP_03666424.1| serine peptidase, S49 family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254371355|ref|ZP_04987356.1| S49 family protease [Francisella tularensis subsp. tularensis FSC033] gi|254875608|ref|ZP_05248318.1| signal peptidase [Francisella tularensis subsp. tularensis MA00-2987] gi|54112669|gb|AAV28968.1| NT02FT0343 [synthetic construct] gi|56605236|emb|CAG46379.1| Peptidase [Francisella tularensis subsp. tularensis SCHU S4] gi|110321549|emb|CAL09762.1| Peptidase [Francisella tularensis subsp. tularensis FSC198] gi|134050548|gb|ABO47619.1| Signal peptidase, S49 family [Francisella tularensis subsp. tularensis WY96-3418] gi|151569594|gb|EDN35248.1| S49 family protease [Francisella tularensis subsp. tularensis FSC033] gi|187713209|gb|ACD31506.1| serine peptidase, S49 family [Francisella tularensis subsp. mediasiatica FSC147] gi|254841607|gb|EET20043.1| signal peptidase [Francisella tularensis subsp. tularensis MA00-2987] gi|282160065|gb|ADA79456.1| Signal peptidase, S49 family protein [Francisella tularensis subsp. tularensis NE061598] Length = 307 Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 115/254 (45%), Gaps = 16/254 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSA 80 S S ++ PH+A I + G I D + + + ++ + S +IV ++SPGGS Sbjct: 46 SLFSSSKELVPHIALIKVNGVIADDAEANAERINQSLDDAYANKSVKGVIVEINSPGGSP 105 Query: 81 YAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 + I+ +Q ++++ P+ ++ AS GY I+ + I A + ++ GSIGV+ Sbjct: 106 VQSDEIYSHMQYLQHKYPTIPMYAVCTDVCASGGYYIAAGAKDIYANKMTITGSIGVIGS 165 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 +DKLG+ ++ S K PFS P+ ++++D ++ F+ V +SR Sbjct: 166 GFGFTGLMDKLGIERRTYTSGENKDFLDPFSPQKPEQTAQFKELLDQTHQVFIAAVEKSR 225 Query: 198 NIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 G ++G +A+++GLID +++ + + I D+ P Sbjct: 226 GDRLKDKNIDTTFSGEPFSGIQAQQMGLIDGFASVDQIRNEKF------NNIDIVDYTRP 279 Query: 256 KNYWFCDLKNLSIS 269 ++ L S Sbjct: 280 LDFLTAVSHKLGNS 293 >gi|294673079|ref|YP_003573695.1| signal peptide peptidase SppA, 67K type [Prevotella ruminicola 23] gi|294473747|gb|ADE83136.1| signal peptide peptidase SppA, 67K type [Prevotella ruminicola 23] Length = 626 Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 65/281 (23%), Positives = 118/281 (41%), Gaps = 19/281 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ---------------ELIERIERISRDDSATALIVS 72 S ++N +A G I DS+ + + + +++ DD A++ Sbjct: 326 KSKQKENGGKIAVYYAYGSIVDSEAMNMLEGGGHCIVGKTVADDLRKLADDDDVKAVVFR 385 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 ++S GGSA A E I A++ +K +KPV+ + AAS GY IS +N I+A T++ GSI Sbjct: 386 VNSGGGSAVASEYIRHAVKLIKAKKPVVVSMGGAAASGGYWISSPANYIIAEPTTITGSI 445 Query: 133 GVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 G+ P V + DKLG++ VK+ + M Q + + Sbjct: 446 GIFGLIPNVSGLVTDKLGITFDGVKTHQFAGYETELVAGKDTQEIMRQMQNYINRGYQNF 505 Query: 192 L--VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 L V+E R + ++ + GR+W ++A + L+D +G ++ + L Q Sbjct: 506 LNVVAEGRGLKPEQVNEIGQGRVWLASDALGIKLVDKLGSLDDAVKKAAELAKLQE-YHT 564 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + ++ + S L+ I + L + Sbjct: 565 AAYPAEPGWFEKLMNKEPKGSYLDGQIRELLGDAYLPLMQI 605 Score = 98.1 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 94/277 (33%), Gaps = 30/277 (10%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------------- 47 +L I + ++SLV + S S+ + V + + G + Sbjct: 45 ILSLITGLFFVISLVGMVA---SDSAATKVKENSVFVLKLSGSVNERSEEGTPFDDFLGL 101 Query: 48 -----EDSQELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVIT 101 +LI I + +D + + S G S + + A++ K I Sbjct: 102 GDTGSMGLDDLIASIRKAKDNDDIKGIYIQGGSAGFDSPATAQQLRDALKDFKTSGKWIV 161 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + A Y ++ ++ I V G+ + Y K DKLG+ + K K Sbjct: 162 AYANNYSQASYYVATVADKIYLNGQGSVDLRGLGGKSEYYKGLYDKLGIKYQVAKVGKYK 221 Query: 162 AEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW---TGA 216 + + ++ + Q + + ++++ ++E R + D+ L + + Sbjct: 222 SYVESNTLTGMSDYDREQRQAYLGGIWKYWLKEMAEGRKVKADELDKLVNDSLLAFTPAE 281 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 + K L+D V EE+ + +I Sbjct: 282 QLIKSKLVDKVLFPEEIKAEIKNRLKLGKNDEINQLT 318 >gi|87201072|ref|YP_498329.1| signal peptide peptidase SppA, 67K type [Novosphingobium aromaticivorans DSM 12444] gi|87136753|gb|ABD27495.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Novosphingobium aromaticivorans DSM 12444] Length = 625 Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 64/278 (23%), Positives = 126/278 (45%), Gaps = 12/278 (4%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLS 74 + + +A + + G+I D + + I+ +++ D L++ + Sbjct: 298 VYLADKPAAKDGSAIAVVTVAGEIVDGDAGPGVAGGDRIADLIDGVTQADDYAGLVLRVD 357 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVI-TEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 SPGGS A E I A+++V+ + + + +AAS GY +S + I A +++ GSIG Sbjct: 358 SPGGSVMASERIRAAVERVRAKGLPVAVSMGSVAASGGYWVSTPAQRIFAEPSTITGSIG 417 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V P + L + GV+ + V+++P+ +P +NP+ +MQ V+ +Y F+ LV Sbjct: 418 VFAVLPTFEQTLPQYGVTTEQVRTTPLSGQPDLLGGLNPQVSALMQGQVEQTYTRFLGLV 477 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS--IRKIKD 251 +++R ++ GRIW G A+++GL+D GG ++ + ++D Sbjct: 478 AKARGKSPADIDRIAQGRIWDGGTARQLGLVDQFGGLDDAVAWVAKQAKADKWHAEYVED 537 Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 P + ++ + + QGL A Sbjct: 538 EPSPVAQFLRQMETGEAPEARAHDLAGALAAQQQGLVA 575 Score = 78.5 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 78/212 (36%), Gaps = 9/212 (4%) Query: 51 QELIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 ++L IE + D A+++ L S GGSA +I A+ +V+ + + + Sbjct: 81 RDLTRAIEAAATDKRIKAVVLDLESFGGGSAVHLSSIGAAMDRVRAARKPVFVRSLIYTD 140 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 ++ ++ V G + K +DKL ++ K K+ P+ Sbjct: 141 DAMQLAAHASEAWVDPMGGVAITGPGGTMLFYKGLIDKLKANVHIFKVGTYKSAVEPYMR 200 Query: 170 V--NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV------LSDGRIWTGAEAKKV 221 +P+A + MQ V + + + V ++R ++D A K Sbjct: 201 AQSSPEAREAMQAVYGAIWQNWQDEVRKARPKADLALATTDPAKWVADNGGDAAQAALKS 260 Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 GLID VG + + + + + + Sbjct: 261 GLIDRVGDRIAFGKRVAEVVGADDQGPLGSFK 292 >gi|167523164|ref|XP_001745919.1| hypothetical protein [Monosiga brevicollis MX1] gi|163775720|gb|EDQ89343.1| predicted protein [Monosiga brevicollis MX1] Length = 1557 Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 65/302 (21%), Positives = 122/302 (40%), Gaps = 29/302 (9%) Query: 9 KTRYVM-------LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QE 52 KTR+V+ SL + V + SS V I G I Sbjct: 286 KTRFVVPEKRYARFSLKKIGVAISAKSS-------RVGVIRCGGTIVSGKGQRGSFGQDN 338 Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 +I + R A+++ + S GGSA A + I R + ++ KPV+ +AAS GY Sbjct: 339 IIPMLWEAHRRADIDAVVLRVDSSGGSALASDLIAREVARLAAVKPVVASFGTLAASGGY 398 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS--SPMKAEPSPFSEV 170 IS ++ IVA S+ GSIGV P + +D + + S P+ ++ + Sbjct: 399 YISALAHTIVADPMSITGSIGVAMLRPNGQKLIDDMMGVRHHLISEPGPLARVNDFYAPM 458 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 +P+ + + YH F+++V + R + ++ + G++++ +A++ GL+D +G Sbjct: 459 SPEVRAYLDKRSEEVYHAFLKIVCQGRGMSLEEAEKHAKGQVFSAEQAQQRGLVDQLGSL 518 Query: 231 EEVWQSLYALG----VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 ++ L V + P ++ + + P + Q G Sbjct: 519 QDAVDQAAKLAQRRQVTPGQTLYEVLRPKMSFLQRQFMGSNKFVIDALGFPNINQLLASG 578 Query: 287 LW 288 + Sbjct: 579 IV 580 >gi|237654702|ref|YP_002891016.1| signal peptide peptidase SppA, 67K type [Thauera sp. MZ1T] gi|237625949|gb|ACR02639.1| signal peptide peptidase SppA, 67K type [Thauera sp. MZ1T] Length = 613 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 62/225 (27%), Positives = 110/225 (48%), Gaps = 10/225 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATA 68 + + + VA I +G I D I D+ A Sbjct: 303 IEAEAYLALAADDTRHAAGSVAVIVAQGTIVDGAEPAGVVAGDTFARLIREAREDEDIKA 362 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 L++ + SPGGSA+A E I R ++ + KPVI + +AAS GY I+ ++ I AA ++ Sbjct: 363 LVLRIDSPGGSAWASELIRRELELTRQAGKPVIASMSSVAASGGYWIATGADEIWAAPST 422 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 + GSIG+ +P L +LG+ + V ++P+ P ++P A + MQ ++ Y Sbjct: 423 VTGSIGIFGLFPEFSEPLRRLGIGVDGVATAPLAGALDPRRPLDPAAAEAMQLGIEHGYR 482 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 F+ +V+++R + + ++ GR+WTG A +GL+D +G ++ Sbjct: 483 RFLEVVAQARKLTVAEVDAVARGRVWTGEAASGLGLVDKLGSLDD 527 Score = 73.1 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 91/281 (32%), Gaps = 35/281 (12%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 ++ V++ + ++ L L +F V+ S + G I + Sbjct: 20 LDLVVRGVFYALLIFGLGVLVSFFFHPEPEVQAGSA--LVLRPVGTIVEQAELEPPLALL 77 Query: 52 -------------ELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRK 97 +L++ + + D AL++ G + AI K Sbjct: 78 RAGGAPAGQLRLADLVDAVRKARDDARIAALVIETDELVGGGFSKLAELRAAIADFKASG 137 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + E + Y ++ ++ + + V G+ Y + LDKLGV + + Sbjct: 138 KPVLARGERFTQSQYYLASVADELHLSPDGFVLLRGLARYGTYFRDALDKLGVKVHVFRV 197 Query: 158 SPMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD------ 209 K+ PF+ +++ + + +D++D + + ++ SR + + Sbjct: 198 GEYKSFSEPFTRSDMSDEDREATRDLLDGLWRFMRDDIAASRKLAPAAIDAHVNDIRGAL 257 Query: 210 --GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 A GL+D ++E L K Sbjct: 258 AAAGGDAAKAALAAGLVDRFSTRDEWRARLIEAVGTDHEGK 298 >gi|171915041|ref|ZP_02930511.1| peptidase, U7 family protein [Verrucomicrobium spinosum DSM 4136] Length = 343 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 67/270 (24%), Positives = 122/270 (45%), Gaps = 15/270 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLS 74 + + + RI I G I + + +E+ S D S A+++ ++ Sbjct: 56 EAGAAETKDKIVRIDIEGIIASGPAGDLFSEGGMNVEAIQRALEQASEDKSVKAIVIRVN 115 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGG A + ++ A++K RK V+ + +AAS GY ++C ++ IVA ET+L SIGV Sbjct: 116 SPGGEVTASDNLYNAVKKAAARKKVVVYMDSIAASGGYYLACGASKIVANETTLTASIGV 175 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + Q K+G+ + S K S + + +Q +V + Y FV +V+ Sbjct: 176 IIQSLNYSQTFGKVGLETMTFASGKFKDTLSGSRPMREDEREYIQSLVSAMYDKFVGIVA 235 Query: 195 ESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD-W 252 ++RNI + ++DGR+ TG +A + L+D +G E+ + LG + +K Sbjct: 236 KARNIDEAQLRTGVADGRVVTGKQALEYKLVDQLGYVEDAYALAKELGSAKDAMVVKYSL 295 Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282 P + SS + + + + Sbjct: 296 TPSLAQLLGIMGKAQASSGGKVELDVSDRL 325 >gi|257865950|ref|ZP_05645603.1| protease/peptidase [Enterococcus casseliflavus EC30] gi|257872283|ref|ZP_05651936.1| protease/peptidase [Enterococcus casseliflavus EC10] gi|257799884|gb|EEV28936.1| protease/peptidase [Enterococcus casseliflavus EC30] gi|257806447|gb|EEV35269.1| protease/peptidase [Enterococcus casseliflavus EC10] Length = 343 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 65/255 (25%), Positives = 118/255 (46%), Gaps = 15/255 (5%) Query: 31 VEDNSPHVARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPG 77 D + R+++ G I S +E + I D + +++ +++PG Sbjct: 57 AGDQDNRIVRLSLEGTIASSSSGGLFTTESYDHQRFLEELRMIQEDPTIGGILMEVNTPG 116 Query: 78 GSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 G Y I R + K+K P+ + MAAS GY IS ++ I A + ++ GSIGV+ Sbjct: 117 GGVYESAEIARELAKIKELGIPMYVSMKNMAASGGYYISAGADKIFATDETITGSIGVIM 176 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 +KLG+ + KS +K S E +++Q VD++Y FV++V+E Sbjct: 177 SGLNYAGLFEKLGIEDNTYKSGALKDVGSSTREPTEADKEVLQTYVDNAYGRFVKIVAEG 236 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R + + ++DGRI+ G +A VGL+D +G E+ ++ A + +I ++ Sbjct: 237 RGMTEEAVRKIADGRIYDGQQAVSVGLVDEIGFPEDTLAAMQADLGLEDA-EIFSYDVSS 295 Query: 257 NYWFCDLKNLSISSL 271 + S++ L Sbjct: 296 TGFASTWLGSSLAEL 310 >gi|256845156|ref|ZP_05550614.1| signal peptide peptidase SppA, 67K type [Fusobacterium sp. 3_1_36A2] gi|256718715|gb|EEU32270.1| signal peptide peptidase SppA, 67K type [Fusobacterium sp. 3_1_36A2] Length = 551 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 56/273 (20%), Positives = 121/273 (44%), Gaps = 13/273 (4%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70 ++ + +A I + G+I + ++E+++ + + L+ Sbjct: 267 FLEYVSAYKRKKNKSKNTIAVINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLV 326 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + ++SPGGSA E I++ ++K+ P+ + ++ AS GY I+ + A +L G Sbjct: 327 LRINSPGGSALESEKIYQKLKKL--EVPIYISMGDLCASGGYYIATVGKKLFANPVTLTG 384 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ YP ++KL V+++ FS+++ ++ + + ++ Y F Sbjct: 385 SIGVVVLYPEFTETINKLKVNMEGFSKGKGFDIFDVFSKLSEESKEKIIYSMNEVYSEFK 444 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 V ++RNI + ++ GR+W G +AK+ GL+D +G + SL + + Sbjct: 445 EHVIQARNISEEDLEKIAGGRVWLGNKAKENGLVDELGSLNDCIDSLAKDLELKDFK--L 502 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 + + + + + D I ++ K Sbjct: 503 TYIRGRKSIMEIVSAMKPQFIKSDIIGKIEMLK 535 Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 55/286 (19%), Positives = 115/286 (40%), Gaps = 16/286 (5%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 F+L K K + + SL + V F+ + VED ++ I++ + + L++ +E ++ Sbjct: 27 FILGKFKNKDKV-SLKGVKTVVFNLNELVEDYM--ISTISVNKAL-SHEALLKALEHLAD 82 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D +I+ + S E I +K+ K +I + + A+ I + Sbjct: 83 DKKIEKIIIDIDEIDLSRVHIEEIKEIFEKLSVDKEIIAIGTTFDEYSYQVALLANKIYM 142 Query: 123 AA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQ 179 + S + G ++ PY K L LGV++ ++ K E +++ + + + Sbjct: 143 LNTKQSCLYFRGYEYKEPYFKNILATLGVTVNTLHIGDYKVAGESFSNDKMSEEKKESLI 202 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG--AEAKKVGLIDVVGGQEEVWQSL 237 ++ ++ + F+ LV E R D T + G + +A ++GLID + EE Sbjct: 203 NIKETLFQNFINLVKEKRK--VDITNEILSGDLIFANSEKAIQLGLIDGLSTYEE----- 255 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 + ++ ++ KN LE I + + Sbjct: 256 IGIDYNEDTVDFLEYVSAYKRKKNKSKNTIAVINLEGEIDTRESKE 301 >gi|305665196|ref|YP_003861483.1| putative protease IV [Maribacter sp. HTCC2170] gi|88709948|gb|EAR02180.1| putative protease IV [Maribacter sp. HTCC2170] Length = 586 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 126/253 (49%), Gaps = 10/253 (3%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSP 76 S + VA + +G+I + + + + DD A+++ + SP Sbjct: 291 SNKKSLNKGDDKVAVVFAQGEILYGEGGPDIIGQGIISRALVKARDDDRVKAIVLRVDSP 350 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GGSA + I+R ++ K +KPV+ + +AAS GY I+ ++ I A T++ GSIGV Sbjct: 351 GGSALTSDIIWREVELAKAKKPVVVSMGNVAASGGYYIAAGADKIFAEPTTITGSIGVFG 410 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 P V +G++ + V ++ + S F + +++Q+ ++ +Y F+ VS+ Sbjct: 411 TIPNVNELAADIGINAEQVGTNKNSVDYSLFEPMTENFRKVVQEGIEETYETFLDRVSKG 470 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 RNI + ++ GR+W+G +AKK+GLID +G ++ + A + IK + K Sbjct: 471 RNISIAEADSMAQGRVWSGVDAKKLGLIDELGNMDDAIAA-AAQLAEIESYGIKKYPKYK 529 Query: 257 NYWFCDLKNLSIS 269 + ++++S + Sbjct: 530 TGFEKFMEDMSGA 542 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 91/268 (33%), Gaps = 22/268 (8%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED------------------ 49 I + + + + V + + ++ I D Sbjct: 16 IAFGIMFVMFLLFISLIGGAEDSVVIKDNSILELQLKQPINDYVGNNEADPFTGFFGQAQ 75 Query: 50 -SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 E++ I+ D + +S + +AI +A++ K I + Sbjct: 76 GLDEVLHAIKVAKDDSDIKGISISNNFIMAGLAQTQAIRKALKDFKESGKFIYTYSDFYM 135 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167 Y ++ S+ I + G+ + + K DK GV ++ ++ K+ PF Sbjct: 136 QKDYYLASVSDSIFLNPVGGLDFKGLSTEVLFYKDLQDKTGVKMEVIRHGKYKSAVEPFL 195 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLID 225 +E++ +++++ S + V +SE RN+ + +++D A GLID Sbjct: 196 ANEMSDANRTQIKELISSLWDTMVADISEGRNLSVENVNIIADTLGGRLPKYAVASGLID 255 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWN 253 V +E L + +I Sbjct: 256 GVVFFDEYEAKLRLATSLSAEDEINYVT 283 >gi|297583628|ref|YP_003699408.1| signal peptide peptidase SppA, 36K type [Bacillus selenitireducens MLS10] gi|297142085|gb|ADH98842.1| signal peptide peptidase SppA, 36K type [Bacillus selenitireducens MLS10] Length = 328 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 63/267 (23%), Positives = 120/267 (44%), Gaps = 23/267 (8%) Query: 37 HVARIAIRGQIEDS------------QELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 +A I + G I+D ++ + ++E + +I+ +++PGG + Sbjct: 56 RIAVIQVEGMIQDGGAGGLFSVGYDHRQTLRQLEYAAESTDIYGVILQVNTPGGGVVESD 115 Query: 85 AIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + I ++ KPV + AAS GY IS ++ I A + GSIGV+ Q V Sbjct: 116 ELHNRIVAIQEEFDKPVYAVMGGQAASGGYYISAPADKIYANAQTFTGSIGVIIQSLNVA 175 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-NIPY 201 ++ GVS+++ S K SP EV +++ ++V SY FV +V R N+ Sbjct: 176 GLAEEWGVSLETFTSGEFKDILSPTKEVTDDERELLNEIVMDSYEQFVDVVDNGRENLSR 235 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 D+ L+DGRI+TG +A + GL+D +G ++ + + + ++ + Sbjct: 236 DEVYELADGRIFTGNQAVENGLVDEIGNRDAAIEDMIEELGRGDLSVVE--------FGG 287 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 S++ L +P + ++ + Sbjct: 288 AAGFASLAGLGSQVLPGSEARLIENVL 314 >gi|119505648|ref|ZP_01627718.1| protease IV [marine gamma proteobacterium HTCC2080] gi|119458460|gb|EAW39565.1| protease IV [marine gamma proteobacterium HTCC2080] Length = 611 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 64/251 (25%), Positives = 120/251 (47%), Gaps = 12/251 (4%) Query: 27 WSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPG 77 +E+ P +A I I G++ S ++ ++ER A+++ ++SPG Sbjct: 315 AEKEIEETKPRIAVIPIEGELIPGESGRGFAGSDTVVSQLERALEQPDLRAVVLRINSPG 374 Query: 78 GSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GS +A E I + I ++K PV+ + +AAS GY I+ ++ I+A +++ GSIGV Sbjct: 375 GSVFASEVIRQKILEIKAADLPVVASMGAVAASGGYYIAADADEILAQPSTITGSIGVFA 434 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 +P V+ GV+ V +S + + V+ +++ ++ Y FV LV+ Sbjct: 435 AFPTVEKLYQWAGVTSDGVSTSSLATAARVDTGVSDTGRRIINSMISKVYDDFVTLVALG 494 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP-- 254 R +++ ++ GR+W+G +A VGL+D +GG + S L + P Sbjct: 495 RGKTWEEINSVAGGRVWSGEDALSVGLVDNLGGLQAALDSAAGLAEIEDFDTFYIGTPIS 554 Query: 255 PKNYWFCDLKN 265 P+ +F + Sbjct: 555 PEQRFFEQIGK 565 Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 77/206 (37%), Gaps = 11/206 (5%) Query: 53 LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 + + I+ + DD TALI+ L + G S + + AI+ K+ + + + + Sbjct: 93 VKKAIKEAAADDRITALILDLEALNGPSISHVQELKAAIEIFKSAGKPVIATGDYYSQSQ 152 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SE 169 YL++ + ++ + G YV+ LD + +++ + K+ P+ + Sbjct: 153 YLLASQATQVLLHPEGGIEVSGFAVYRNYVRKLLDNVYLTMNVFRVGESKSAVEPYLRDD 212 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL----VLSDGRIWTGAEAKKV---- 221 ++ +++ + + + +LV R + D +G +A + Sbjct: 213 MSGLEREVVGQWLGDVWRSYTQLVEAPRQMDAGFVDQFINEFPDRLEISGGDAAALMLEA 272 Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIR 247 G +D + + + L Sbjct: 273 GFVDELVTHSQRDEMLADWVGATDED 298 >gi|315638324|ref|ZP_07893504.1| signal peptide peptidase SppA [Campylobacter upsaliensis JV21] gi|315481591|gb|EFU72215.1| signal peptide peptidase SppA [Campylobacter upsaliensis JV21] Length = 293 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 71/277 (25%), Positives = 132/277 (47%), Gaps = 7/277 (2%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD 63 ++ I T + + L V FS SS V ++ RI ++G+I D+ ++E+I D Sbjct: 14 IISYINTYFKTFLFLLLLVWLFSPSSSVSVA--NLERIDLKGEILDTGAVLEKIINAKND 71 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 + ++ + SPGG+ + AI+ +K +KPVI+ AS YL A++ I A Sbjct: 72 PNIKGVLFFIDSPGGAFAPSMELALAIKDLKAQKPVISYAAGTMASGSYLAGVAADKIYA 131 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 + +GSIGV+ Q + K+G+ +++K+ K + E + + +Q +++ Sbjct: 132 NPAAFIGSIGVIAQGMNISELAQKIGIKEQTIKAGTFKEAGTFTREWSEEERAYLQRLIN 191 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 +SY FV V++ R + D+ +D R++ EAK +GLID + E+ + L L Sbjct: 192 NSYMLFVEFVAKERGLKVDEKEKWADARVFLANEAKNLGLIDSLSNYEQAKKELEILSKV 251 Query: 244 -----QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 + KI + N + +LL+++ Sbjct: 252 ANPVWKEADKIDQFLEKLNQQSVQFFSTLSKNLLQNS 288 >gi|307250517|ref|ZP_07532462.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857459|gb|EFM89570.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 618 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 129/266 (48%), Gaps = 12/266 (4%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 +A + + GQI S +++ + + DD+ +I+ ++SPGGSA A Sbjct: 321 QAEHKIAVVNVEGQIISGESDASSAGSDTIVKLLRKAREDDNVRGVILRVNSPGGSALAS 380 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + +++++ KPV+ + MAAS GY IS S+ I+A+ T++ GSIG+ + Sbjct: 381 EIIRQEVEEIQKAGKPVVASMGGMAASGGYWISATSDKIIASPTTITGSIGIFGLATSFE 440 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LGV+ + SP + SP + + +++Q +++ Y F+ LVS RN+ Sbjct: 441 KTAKNLGVTEDGISLSPFASS-SPLKTLPKEQAEVIQISIENGYDRFLELVSRGRNMSKQ 499 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261 ++ G++W+G +A K GL+D +G + ++ L + + ++ W Sbjct: 500 AVDKIAQGQVWSGEDALKHGLVDELGDFTAAYSAVIELVNQRRKANNEAEIEHFRSQWMI 559 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287 D + SLL+ + + + GL Sbjct: 560 DSDDSLFGSLLKGSKLKFQLSSWLGL 585 Score = 82.7 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 96/289 (33%), Gaps = 46/289 (15%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV----------ARIAIRGQIEDSQ-- 51 + + I+ + L + +V F++ + + S + + G + D+ Sbjct: 11 IFRCIREFVMSLFFIIFVLVCFAFLALINQESGSTKHTNFIEKGALTLNLDGYLADNHDK 70 Query: 52 -----------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIF 87 +++ I + ++D+ T L++ L+ G A I Sbjct: 71 YGDLHRLVQAELGNHEPIKISTFDVVRAIAKAAKDERITGLVLDLAYFQGGDSASLHFIG 130 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 I + K + V E + Y ++ ++ I + V + Y K LDK Sbjct: 131 NEISEFKKSGKPVIAVGEQYSQPQYYLASFADKIYLNKAGFVDIHALSHSNVYFKTLLDK 190 Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204 + + K+ PF +++ +A Q Q + S +H + ++++R IP ++ Sbjct: 191 IEAEPHIFRVGAYKSAVEPFIRDDMSAEAKQNAQTWLTSIWHNIRQDIAQNRKIPAEQVL 250 Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + A L+ + ++ +L Sbjct: 251 LDSQTYIEKYRQLKGDDAQYALSQQLVTDIATNAQIQTALVERFGKDKD 299 >gi|73662359|ref|YP_301140.1| protease [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494874|dbj|BAE18195.1| putative protease [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 330 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 64/300 (21%), Positives = 132/300 (44%), Gaps = 38/300 (12%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWS----------------------SHVEDNSPHVARIAI 43 K+I + + +V ++ S S ++S +A + + Sbjct: 4 KRIIALILAVVIVLGGIIMSSISAVVSSLFSESTTSDTNPFTEKVEKEGNSSKRIAHLTL 63 Query: 44 RGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 G+I + + +++++ + +DDS +++++++PGG Y + I+ I Sbjct: 64 NGEITEGTGGGLFGGEGYNHEAFLKQLDNVKKDDSIKGVLLTVNTPGGGTYPSDEIYEKI 123 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++K + I + A++G A + I A ++ GSIGV+ LG Sbjct: 124 KEIKQKHKKIYVHMDSMAASGGYYISAPADKIYAGPQTMTGSIGVIMSSIDYSGLQKNLG 183 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + +KS K S E+ + ++Q V+D S++ FV +V + R++P K L+D Sbjct: 184 IKQNVIKSGEHKDILSSSREMTSEERDILQSVLDDSFNRFVNIVKDGRDMPESKVRKLAD 243 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 GRI++ +AK GLID +G +++ ++L + + WF + N+ S Sbjct: 244 GRIYSAQQAKSNGLIDEIGYEDQTVKALKKDINAKDAEVFEYST--DGGWFSSMYNVKSS 301 >gi|190150587|ref|YP_001969112.1| protease 4 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263931|ref|ZP_07545535.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915718|gb|ACE61970.1| protease 4 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870796|gb|EFN02536.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 618 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 128/266 (48%), Gaps = 12/266 (4%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 +A + + GQI S +++ + + DD+ +I+ ++SPGGSA A Sbjct: 321 QAEHKIAVVNVEGQIISGESDASSAGSDTIVKLLRKAREDDNVRGVILRVNSPGGSALAS 380 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + +++++ KPV+ + MAAS GY IS S+ I+A+ T++ GSIG+ + Sbjct: 381 EIIRQEVEEIQKAGKPVVASMGGMAASGGYWISATSDKIIASPTTITGSIGIFGLATSFE 440 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LGV+ + SP + SP + + +++Q + + Y F+ LVS RN+ Sbjct: 441 KTAKNLGVTEDGISLSPFASS-SPLKTLPKEQAEVIQISIQNGYDRFLELVSRGRNMSKQ 499 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261 ++ G++W+G +A K GL+D +G + ++ L + + ++ W Sbjct: 500 AVDKIAQGQVWSGEDALKHGLVDELGDFTAAYSAVTELVNQRRKANNEAEIEHFRSQWMI 559 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287 D + SLL+ + + + GL Sbjct: 560 DSDDSLFGSLLKGSKLKFQLSSWLGL 585 Score = 82.4 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 95/289 (32%), Gaps = 46/289 (15%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV----------ARIAIRGQIEDSQ-- 51 + + I+ + L + +V F++ + + S + + G + D+ Sbjct: 11 IFRCIREFVMSLFFIIFVLVCFAFLALINQESGSTKHTNFIEKGALTLNLDGYLADNHDK 70 Query: 52 -----------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIF 87 +++ I + ++D+ T L++ L+ G A I Sbjct: 71 YGDLHRLVQAELGNHEPIKISTFDVVRAIAKAAKDERITGLVLDLAYFQGGDSASLHFIG 130 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 I + K + V E + Y ++ ++ I + V + Y K LDK Sbjct: 131 NEINEFKKSGKPVIAVGEQYSQPQYYLASFADKIYLNKAGFVDIHALSHSNVYFKTLLDK 190 Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204 + + K+ PF +++ +A Q Q + S +H + ++ +R IP ++ Sbjct: 191 IEAEPHIFRVGTYKSAVEPFIRDDMSAEAKQNAQTWLTSIWHNIRQDIAHNRKIPAEQVL 250 Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + A L+ + ++ +L Sbjct: 251 LDSQTYIEKYRQLKGDDAQYALSQQLVTDIATNAQIQTALVERFGKDKD 299 >gi|152979231|ref|YP_001344860.1| signal peptide peptidase SppA, 67K type [Actinobacillus succinogenes 130Z] gi|150840954|gb|ABR74925.1| signal peptide peptidase SppA, 67K type [Actinobacillus succinogenes 130Z] Length = 625 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 59/215 (27%), Positives = 113/215 (52%), Gaps = 11/215 (5%) Query: 37 HVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 ++A + + G I D + +++ +++ D+ AL++ ++SPGGSA+A E I Sbjct: 329 NIAVVNVEGTIIDGESDDQNVGGDTVVKLLQQAQTDERIKALVLRVNSPGGSAFASEKIR 388 Query: 88 RAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 + + ++ + KPV+ + MAAS GY IS ++ IVA + +L GSIG+ +P + Sbjct: 389 QELTALQKQGKPVVVSMGGMAASGGYWISSTADYIVADKNTLTGSIGIFAMFPTFEKTAK 448 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 +GV+ + +SP+ S S + + Q ++ Y F+R+VSE R + ++ Sbjct: 449 NIGVTADGISTSPLADISSLESP-SKVVKDVYQLEIEHGYDEFLRVVSEGRRLDKEQVDQ 507 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 ++ G++W G +A K L+D +G + + L Sbjct: 508 VAQGQVWLGQDAAKYHLVDALGNFDAAVNKAFELA 542 Score = 85.4 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 50/329 (15%), Positives = 111/329 (33%), Gaps = 44/329 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-----RIAIRGQIEDSQ---- 51 + F+ + + + ++ V+ S+ + V + + G + D++ Sbjct: 15 LNFIRDVVMNLFFLAFILLALTVFGLVFSYKAGTTQLVGNQGALLLNLDGYLADNRDESL 74 Query: 52 ---------------------ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRA 89 +++ +E D+ L++ L+ G A + + A Sbjct: 75 TWQKALQEVNSNKIPMQISTFDVVYAVENAKDDERIKGLVLDLNFFEGADLPALDYVGNA 134 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 IQ K + + A Y ++ ++ I V G+ + Y K LDKL Sbjct: 135 IQHFKTSGKPVIVYADNYTQAQYYLASFADEIYLNPAGAVDIRGMTAKNLYFKSMLDKLD 194 Query: 150 VSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--- 204 ++ + K+ PF +++P+A V+ + + + V+++R I + Sbjct: 195 ITPHVFRVGTYKSAVEPFLRDDMSPEAKANAALWVNGMWDNYKQQVAQNRTIQTSQILPE 254 Query: 205 --LVLSDGRIWTG---AEAKKVGLIDVVGGQEEVWQSLYALGVDQSI--RKIKDWNPPKN 257 L D + G A++ L+ + E+ + L AL K D + Sbjct: 255 PNRYLQDLKALNGDNTRYAEQRRLVTTLATSSEMNEKLTALFGKDDEGTAKRVDLATYLS 314 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 L + ++ T + G Sbjct: 315 ALPDRLGGSGGKDFNIAVVN-VEGTIIDG 342 >gi|303250651|ref|ZP_07336848.1| protease 4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252900|ref|ZP_07534789.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650639|gb|EFL80798.1| protease 4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859689|gb|EFM91713.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 618 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 128/266 (48%), Gaps = 12/266 (4%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 +A + + GQI S +++ + + DD+ +I+ ++SPGGSA A Sbjct: 321 QAEHKIAVVNVEGQIISGESDASSAGSDTIVKLLRKAREDDNVRGVILRVNSPGGSALAS 380 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + +++++ KPV+ + MAAS GY IS S+ I+A+ T++ GSIG+ + Sbjct: 381 EIIRQEVEEIQKAGKPVVASMGGMAASGGYWISATSDKIIASPTTITGSIGIFGLATSFE 440 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LGV+ + SP + SP + + +++Q + + Y F+ LVS RN+ Sbjct: 441 KTAKNLGVTEDGISLSPFASS-SPLKTLPKEQAEVIQISIQNGYDRFLELVSRGRNMSKQ 499 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261 ++ G++W+G +A K GL+D +G + ++ L + + ++ W Sbjct: 500 AVDKIAQGQVWSGEDALKHGLVDELGDFTAAYSAVTELVNQRRKANNEAEIEHFRSQWMI 559 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287 D + SLL+ + + + GL Sbjct: 560 DSDDSLFGSLLKGSKLKFQLSSWLGL 585 Score = 83.1 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 96/289 (33%), Gaps = 46/289 (15%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV----------ARIAIRGQIEDSQ-- 51 + + I+ + L + +V F++ + + S + + G + D+ Sbjct: 11 IFRCIREFVMSLFFIIFVLVCFAFLALINQESGSTKHTNFIEKGALTLNLDGYLADNHDK 70 Query: 52 -----------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIF 87 +++ I + ++D+ T L++ L+ G A I Sbjct: 71 YGDLHRLVQAELGNHEPIKISTFDVVRAIAKAAKDERITGLVLDLAYFQGGDSASLHFIG 130 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 I + K + V E + Y ++ ++ I + V + Y K LDK Sbjct: 131 NEISEFKKSGKPVIAVGEQYSQPQYYLASFADKIYLNKAGFVDIHALSHSNVYFKTLLDK 190 Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204 + + K+ PF +++ +A Q Q + S +H + ++++R IP ++ Sbjct: 191 IEAEPHIFRVGTYKSAVEPFIRDDMSAEAKQNAQTWLTSIWHNIRQDIAQNRKIPAEQVL 250 Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + A L+ + ++ +L Sbjct: 251 LDSQTYIEKYRQLKGDDAQYALSQQLVTDIATNAQIQTALVERFGKDKD 299 >gi|322378926|ref|ZP_08053342.1| protease IV (PspA) [Helicobacter suis HS1] gi|321148668|gb|EFX43152.1| protease IV (PspA) [Helicobacter suis HS1] Length = 292 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 64/277 (23%), Positives = 127/277 (45%), Gaps = 3/277 (1%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64 L+ I + L L+ + V + P++A++ + G I +S+ ++I +I ++ Sbjct: 19 LEFITRYFKALVLLLIVAVLLISTKGTTTQKPNLAKLYLYGPIFESESFQDQINKILQNP 78 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 S ++ + SPGG+ A + + + + PV+ V + AS Y ++ I A Sbjct: 79 SIKGALLMIDSPGGTISASVELSDMVASLAKKMPVVAYVRGVMASGSYYAGMMASKIYAN 138 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 +L+GSIGV+F + P +DKLG+ + V K + E P+ Q + +++ Sbjct: 139 RGALIGSIGVIFSGVNIAPLMDKLGIKTQGVAKGAYKEVGTFMREWTPQEKQYLNGLLNE 198 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 Y FV V+++R++ T ++G+I++ +A + LID V +E ++L L + Sbjct: 199 QYGMFVSDVAKARHLDPKDTPAFAEGKIFSAKQALFLKLIDRVSTYDEAIKALEHLSAVK 258 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 + ++ F D S S L + + Sbjct: 259 NPIWLQKDKLE---IFMDKFFKSSSQALAQVLSYQMR 292 >gi|119713115|gb|ABL97184.1| protease IV a signal peptide peptidase [uncultured marine bacterium EB0_49D07] Length = 608 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 59/280 (21%), Positives = 122/280 (43%), Gaps = 13/280 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATA 68 ++ ++ +A I G I + + +I++I +++ A Sbjct: 305 ISYNEYANQMEDDFSESENEIAIITAEGAIMEGEISQGVAGSSGVIKQIRSAHENENTKA 364 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETS 127 ++ ++SPGGS A E + + K + V+ + + AAS G IS ++ I A T+ Sbjct: 365 IVFRVNSPGGSIIASEMMRDELFAAKTKGIKVVVSMGDYAASGGVYISTPADYIFAEPTT 424 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 + GSIGV P ++ +D +GV+ V +S P ++ ++ +Y Sbjct: 425 ITGSIGVAIALPTLENAMDYIGVNFDGVVTSKH-GGWDPTQAIDEDLDKIFASWGADAYD 483 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 FV V++SR+ Y+ ++ GR+W AK++GL+D +GG ++ L + Sbjct: 484 RFVNFVADSRSQSYEDIKAIAGGRVWIATSAKEIGLVDEIGGIDDAIAYAVNLTELED-Y 542 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 +++ + + ++ L + + P + + GL Sbjct: 543 QVEYYGQELSPEELIIRELLENFDVSIKEPKVFSA-LNGL 581 >gi|260494495|ref|ZP_05814625.1| signal peptide peptidase SppA, 67K type [Fusobacterium sp. 3_1_33] gi|260197657|gb|EEW95174.1| signal peptide peptidase SppA, 67K type [Fusobacterium sp. 3_1_33] Length = 551 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 56/270 (20%), Positives = 122/270 (45%), Gaps = 13/270 (4%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70 ++ + +A I + G+I + ++E+++ + + L+ Sbjct: 267 FLEYVSAYKRKKNKSKNTIAIINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLV 326 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + ++SPGGSA E I++ ++K+ P+ + ++ AS GY I+ + A +L G Sbjct: 327 LRINSPGGSALESEKIYQKLKKL--EIPIYVSMGDLCASGGYYIATVGKKLFANPVTLTG 384 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ YP ++KL V+++ FS+++ ++ + + ++ Y F Sbjct: 385 SIGVVVLYPEFTETINKLKVNMEGFSKGKGFDIFDIFSKLSEESKEKIIYSMNEVYSEFK 444 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 V ++RNI + ++ GR+W G++AK+ GL+D +G + SL + + I Sbjct: 445 EHVIQARNISEEDLEKIAGGRVWLGSQAKENGLVDELGSLNDCIDSLAKDLELKDFKLI- 503 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 + + + + + D I ++ Sbjct: 504 -YIRGRKSMMEVVSAMKPQFIKSDIIEKIE 532 Score = 56.5 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 53/284 (18%), Positives = 114/284 (40%), Gaps = 12/284 (4%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 F+L K K + +SL + V F+ + VED ++ I+I + + L++ +E + Sbjct: 27 FILGKFKNKDK-ISLKGVKTVVFNLNELVEDYM--ISTISINKTL-SHEVLLKALENLVN 82 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D +I+ + S E + +K+ K +I + + A+ I + Sbjct: 83 DKKIKKIIIDVDEVDLSRVHIEELKGIFEKLSVNKEIIAIGTTFDEYSYQVSLLANKIYM 142 Query: 123 AA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQ 179 + S + G ++ PY K L GV++ ++ K E ++++ + + + Sbjct: 143 LNTKQSCLYFRGYEYKEPYFKNILATFGVTVNTLHIGDYKVAGESFSNNKMSEEKKESLI 202 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 ++ ++ + F+ LV E R + K ++ D +A ++GLID + EE Sbjct: 203 NIKETLFQNFINLVKEKRKVDITKEILSGDLIFANSEKAIQLGLIDGLSTYEE-----IG 257 Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 + ++ ++ KN LE I + + Sbjct: 258 IDYNEDTVDFLEYVSAYKRKKNKSKNTIAIINLEGEIDTRESKE 301 >gi|251771849|gb|EES52423.1| signal peptide peptidase SppA, 36K type [Leptospirillum ferrodiazotrophum] Length = 334 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 65/283 (22%), Positives = 122/283 (43%), Gaps = 19/283 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDSQE----------------LIERIERISRDDSATALIVSL 73 E + V + I G I D ++ L +E+ RD A+++ + Sbjct: 46 PQEGATEKVVFLPIHGFIGDQEKKGGTPLLGGKTDQVRLLDRELEKARRDPHVRAIVLDI 105 Query: 74 SSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 SPGGS A + ++ I + + PVI ++ AS Y + ++ + A TS+VGS Sbjct: 106 DSPGGSVTASDRLYHKILLFRQRTKIPVIAFFGDLGASGAYYTAMGADEVWARPTSVVGS 165 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IGV+ V+ + K+GV+ ++V S K SPF E+ P+ ++ + +V Y F+ Sbjct: 166 IGVMIANVGVEGLMKKVGVTDRTVASGAEKEMGSPFREMTPEDRRIFEGLVADFYATFLE 225 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 +V R + + L+DGR++T +A GL+D VG + ++ L + + Sbjct: 226 VVERGRRMEANHLRPLADGRVFTARQALADGLLDRVGYRSDLIDHLKKKLGMNKLMLVTY 285 Query: 252 WNP-PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 + + S+ + + ++ W+P Sbjct: 286 RESDEGSPSLLGMDAGGFRSVSAQALAGLIRSLGPTPLYFWSP 328 >gi|307246184|ref|ZP_07528266.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255165|ref|ZP_07536983.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259602|ref|ZP_07541327.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853119|gb|EFM85342.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862038|gb|EFM94014.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866538|gb|EFM98401.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 618 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 69/266 (25%), Positives = 129/266 (48%), Gaps = 12/266 (4%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 +A + + GQI S +++ + + DD+ +I+ ++SPGGSA A Sbjct: 321 QAEHKIAVVNVEGQIISGESDASSAGSDTIVKLLRKAREDDNVRGVILRVNSPGGSALAS 380 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + +++++ KPV+ + MAAS GY IS S+ I+A+ T++ GSIG+ + Sbjct: 381 EIIRQEVEEIQKAGKPVVASMGGMAASGGYWISATSDKIIASPTTITGSIGIFGLATSFE 440 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LGV+ + SP + SP + + +++Q ++S Y F+ LVS RN+ Sbjct: 441 KTAKNLGVTEDGISLSPFASS-SPLKTLPKEQAEVIQISIESGYDRFLELVSRGRNMSKQ 499 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261 ++ G++W+G +A K GL+D +G + ++ L + + ++ W Sbjct: 500 AVDKIAQGQVWSGEDALKHGLVDELGDFTAAYSAVIELVNQRRKANNEAEIEHFRSQWMI 559 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287 D + SLL+ + + + GL Sbjct: 560 DSDDSLFGSLLKGSKLKFQLSSWLGL 585 Score = 82.7 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 96/289 (33%), Gaps = 46/289 (15%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV----------ARIAIRGQIEDSQ-- 51 + + I+ + L + +V F++ + + S + + G + D+ Sbjct: 11 IFRCIREFVMSLFFIIFVLVCFAFLALINQESGSTKHTNFIEKGALTLNLDGYLADNHDK 70 Query: 52 -----------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIF 87 +++ I + ++D+ T L++ L+ G A I Sbjct: 71 YGDLHRLVQAELGNHEPIKISTFDVVRAIAKAAKDERITGLVLDLAYFQGGDSASLHFIG 130 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 I + K + V E + Y ++ ++ I + V + Y K LDK Sbjct: 131 NEISEFKKSGKPVIAVGEQYSQPQYYLASFADKIYLNKAGFVDIHALSHSNVYFKTLLDK 190 Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204 + + K+ PF +++ +A Q Q + S +H + ++++R IP ++ Sbjct: 191 IEAEPHIFRVGAYKSAVEPFIRDDMSAEAKQNAQTWLTSIWHNIRQDIAQNRKIPAEQVL 250 Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + A L+ + ++ +L Sbjct: 251 LDSQTYIEKYRQLKGDDAQYALSQQLVTDIATNAQIQTALVERFGKDKD 299 >gi|303236590|ref|ZP_07323172.1| signal peptide peptidase SppA, 67K type [Prevotella disiens FB035-09AN] gi|302483243|gb|EFL46256.1| signal peptide peptidase SppA, 67K type [Prevotella disiens FB035-09AN] Length = 590 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 66/274 (24%), Positives = 124/274 (45%), Gaps = 16/274 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQ--------------ELIERIERISRDDSATALIVSLS 74 + +A G I D+Q ++ +E + DD+ A+++ ++ Sbjct: 295 DDTNLDDEKIAIYYAYGDIVDNQIAGLFGNNHVIAGKQVCSDLEEMMNDDNIKAVVIRIN 354 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 S GGSAYA E ++ I ++K KPV+ + AAS GY +S +N IVA T++ GSIG+ Sbjct: 355 SGGGSAYASEQMWHQIMELKKVKPVVVSMGGYAASGGYYMSAPANWIVAEPTTITGSIGI 414 Query: 135 LFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 +P +KLG+ V ++ A S NP+ ++M+Q +D Y F V Sbjct: 415 FGMFPDYSGLATEKLGLKFDQVVTNKNAAFGSNVRPFNPEEMRMIQAYIDRGYATFKNRV 474 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 ++ R + + L+ G ++TG +A K+ L+D +GG + L + + Sbjct: 475 AQGRKMTIQQVENLAQGHVYTGEDALKIKLVDQLGGLDVAVAKAAQLAQIDDYC-TQSYP 533 Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 P +++ ++ + L++ + + Sbjct: 534 KPTSWFEQIMEMEPTGNYLDEQLRAGLGNLYEPF 567 Score = 96.2 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 96/284 (33%), Gaps = 35/284 (12%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSW-----------SSHVEDNSPHVARIAIRGQIE- 48 M+ LK + + + L L + F++ E V + + GQ+ Sbjct: 1 MKDFLKHVLATIIGIFLFGLITIAFAFISIVGMVLSTTDDKTEVKDNSVLVVNLSGQLTE 60 Query: 49 ------------------DSQELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRA 89 + I+ ++ DD + + S + + A Sbjct: 61 RVEENIFSQLRGEVQQGIGLDDFIKGLKEAKDDDKIKGIYIEAGLFSSNSYASLQEARNA 120 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 I K + + Y ++ A++ + ++ G+ Q Y+K L K G Sbjct: 121 ILDFKKSGKWVVAYGDSYTQGAYYLASAADKVWLNPQGMIDWHGLATQRVYLKDMLGKFG 180 Query: 150 VSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 + ++ K K+ F+E ++ + S ++ + VS SR + K Sbjct: 181 IKMQVSKVGAYKSATETFTEEKMSDSDRAQTTAYLTSIWNNITKEVSNSRKVSVAKLNEY 240 Query: 208 SDGRIWTGA--EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 +D I A + K + D + ++V + + L +++ I Sbjct: 241 ADSVITFAAPTDYIKYKMADKLLYTDQVKKEVKQLLGEEADADI 284 >gi|325570031|ref|ZP_08145956.1| U7 family peptidase [Enterococcus casseliflavus ATCC 12755] gi|325156859|gb|EGC69030.1| U7 family peptidase [Enterococcus casseliflavus ATCC 12755] Length = 343 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 65/255 (25%), Positives = 118/255 (46%), Gaps = 15/255 (5%) Query: 31 VEDNSPHVARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPG 77 D + R+++ G I S +E + I D + +++ +++PG Sbjct: 57 AGDQDNRIVRLSLEGTIASSSSGGLFTTESYDHQRFLEELRMIQEDPTIGGILMEVNTPG 116 Query: 78 GSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 G Y I R + K+K P+ + MAAS GY IS ++ I A + ++ GSIGV+ Sbjct: 117 GGVYESAEIARELAKIKELGIPMYVSMKNMAASGGYYISAGADKIFATDETITGSIGVIM 176 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 +KLG+ + KS +K S E +++Q VD++Y FV++V+E Sbjct: 177 SGLNYAGLFEKLGIEDNTYKSGALKDVGSATREPTEADKEVLQTYVDNAYGRFVKIVAEG 236 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R + + ++DGRI+ G +A VGL+D +G E+ ++ A + +I ++ Sbjct: 237 RGMTEEAVRKIADGRIYDGQQAVSVGLVDEIGFPEDTLAAMQADLGLEDA-EIFSYDVSS 295 Query: 257 NYWFCDLKNLSISSL 271 + S++ L Sbjct: 296 TGFASTWLGSSLAEL 310 >gi|330798433|ref|XP_003287257.1| hypothetical protein DICPUDRAFT_78124 [Dictyostelium purpureum] gi|325082717|gb|EGC36190.1| hypothetical protein DICPUDRAFT_78124 [Dictyostelium purpureum] Length = 639 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 67/284 (23%), Positives = 119/284 (41%), Gaps = 22/284 (7%) Query: 26 SWSSHVEDNSPHVARIAIRGQI--------------EDSQELIERIERISRDDSATALIV 71 S + + N +A I G I S L+ I +D A+I+ Sbjct: 306 SPRLYSKKNKNLIALINCEGTIHQGAGKTKFNGGPSIGSDSLVLAIRSAVQDKDVKAIIL 365 Query: 72 SLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 ++S GGS A + + I+ K K ++ + AS GY I+C ++ I+A +L G Sbjct: 366 RVNSGGGSYIASDLVHHEIEAAKKAGKKIVVSMGTYCASGGYFIACNADKIIALGATLTG 425 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSP-----MKAEPSPFSEVNPKAVQMMQDVVDSS 185 SIGVL ++P K+GV+ ++ +P S N K + + + +D Sbjct: 426 SIGVLTAKFNLQPMWKKIGVTFDDLRLNPDGTKDNATYFSSLHNYNEKQLSDVNNYLDFI 485 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ- 244 Y F VS+ R + D+ ++ GR+WTG++A GL+D +GG +E ++ L Sbjct: 486 YEDFTSKVSKGRRLTRDQVEEIARGRVWTGSQALDNGLVDKIGGIKEAIEAAKELCSMPS 545 Query: 245 -SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 S + + + S L + +P+ + + Sbjct: 546 TSTPYVVTYPKENIVQALLSQPNSSRDLEKRGLPVQSSISLSSI 589 Score = 76.2 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 93/272 (34%), Gaps = 26/272 (9%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 ++++ ++ R+ +LS T+ + + I I+ S Sbjct: 21 LQYINQRPLLRWFLLSAGFFTLKKIGKIIKNRVKNNTILEIDFTQNIDTSDVGMNPIEKI 80 Query: 52 ---------ELIERIERISRDDSATALIVSLSS-PGGSAYAGEAIFRAIQKVKNRKPVIT 101 +++E +E+ S D LIV L S + A+Q K Sbjct: 81 FEPNTITFKDILESLEKASTDKKIIGLIVKLGGENQLSLSNIQEFRNAVQAFKKSGKRAV 140 Query: 102 EVHEMAASA-----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 + Y ++ A + + V I + + +VK L+KLGV ++ Sbjct: 141 VFTDSFTEVGSGIARYYLASAFTDVYMSPAGTVNLINSQYDFAFVKGTLEKLGVVPDALT 200 Query: 157 SSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 K+ + ++ + M + S Y + +S+ R + D+ L + ++ Sbjct: 201 RKEYKSALNSLINEKLTEAEKESMNAIFKSLYDQIILDISKDRGLTVDQVNGLFETGPFS 260 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 +A LID +EV+ + Y Sbjct: 261 ADKALVNKLIDATLYSDEVYTTTYEKLNIAKE 292 >gi|307261744|ref|ZP_07543410.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868562|gb|EFN00373.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 618 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 129/266 (48%), Gaps = 12/266 (4%) Query: 33 DNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 +A + + GQI S +++ + + DD+ +I+ ++SPGGSA A Sbjct: 321 QAEHKIAVVNVEGQIISGESDASSSGSDTIVKLLRKAREDDNVRGVILRVNSPGGSALAS 380 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + +++++ KPV+ + MAAS GY IS S+ I+A+ T++ GSIG+ + Sbjct: 381 EIIRQEVEEIQKAGKPVVASMGGMAASGGYWISATSDKIIASPTTITGSIGIFGLATSFE 440 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LGV+ + SP + SP + + +++Q +++ Y F+ LVS RN+ Sbjct: 441 KTAKNLGVTEDGISLSPFASS-SPLKTLPKEQAEVIQISIENGYDRFLELVSRGRNMSKQ 499 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261 ++ G++W+G +A K GL+D +G + ++ L + + ++ W Sbjct: 500 AVDKIAQGQVWSGEDALKHGLVDELGDFTAAYSAVTELVNQRRKANNEAEIEHFRSQWMI 559 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287 D + SLL+ + + + GL Sbjct: 560 DSDDSLFGSLLKGSKLKFQLSSWLGL 585 Score = 82.4 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 95/289 (32%), Gaps = 46/289 (15%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV----------ARIAIRGQIEDSQ-- 51 + + I+ + L + +V F++ + + S + + G + D+ Sbjct: 11 IFRCIREFVMSLFFIIFVLVCFAFLALINQESGSTKHTNFIEKGALTLNLDGYLADNHDK 70 Query: 52 -----------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIF 87 +++ I + ++D+ T L++ L+ G A I Sbjct: 71 YGDLHRLVQAELGNHEPIKISTFDVVRAIAKAAKDERITGLVLDLAYFQGGDSASLHFIG 130 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 I + K + V E + Y ++ ++ I + V + Y K LDK Sbjct: 131 NEINEFKKSGKPVIAVGEQYSQPQYYLASFADKIYLNKAGFVDIHALSHSNVYFKTLLDK 190 Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204 + + K+ PF +++ +A Q Q + S +H + ++ +R IP ++ Sbjct: 191 IEAEPHIFRVGTYKSAVEPFIRDDMSAEAKQNAQTWLTSIWHNIRQDIAHNRKIPAEQVL 250 Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + A L+ + ++ +L Sbjct: 251 LDSQTYIEKYRQLKGDDAQYALSQQLVTDIATNAQIQTALVERFGKDKD 299 >gi|119356392|ref|YP_911036.1| signal peptide peptidase A [Chlorobium phaeobacteroides DSM 266] gi|119353741|gb|ABL64612.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Chlorobium phaeobacteroides DSM 266] Length = 601 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 112/275 (40%), Gaps = 15/275 (5%) Query: 29 SHVEDNSPHVARIAIRGQIE--------------DSQELIERIERISRDDSATALIVSLS 74 ++ D +A I + G I D + L +E + AL++ + Sbjct: 293 NYNADGRDAIALITLSGPIYRSGGASGMGVAEGFDEKLLQRSLEVALDNRDVKALVLRID 352 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGG A A + + +KP++ + +AAS GY+ + A N I A ++ GSIGV Sbjct: 353 SPGGDALASADMLEMLYFAAKKKPIVVSMSGVAASGGYMAALAGNKIFAEPLTITGSIGV 412 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 P + ++K G+ + V S F ++ A YH FV V+ Sbjct: 413 YALKPEISGLVEKTGLQREVVTRGRYADATSLFKPLDKDAYDKFVAASGDVYHDFVSKVA 472 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD-WN 253 SR + + ++ GR+W+G A + GLID +GG + + LG +K + + Sbjct: 473 TSRKMRWAAADSVAGGRVWSGKRALQAGLIDSLGGLHDAIREAQILGKIDKTKKPRILFY 532 Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 P + W L S +KQ + L Sbjct: 533 PERKSWMESLAEGDFSGFSRSVTIALKQRLIHELV 567 Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 39/252 (15%), Positives = 100/252 (39%), Gaps = 21/252 (8%) Query: 10 TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI------------------EDSQ 51 +V++ ++ +F + S V + I+G + Q Sbjct: 16 FSFVVVPILIAVSAFFYFRSSYVLPDKFVLSVPIQGNLDEVHSLSSSLPLLSSAEPLSFQ 75 Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 +L+ + + D ++++ + + + +I+K+K + A + Sbjct: 76 DLLFLFDHAAGDKRIGSILLEIGGVHANPAKLTELRYSIEKMKASGKKVVAFLRSAEDSD 135 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV- 170 YL++ A + IV E + G+ + + L+K+G++ ++ + K+ PF Sbjct: 136 YLLATACDSIVVEEGGFLMLDGLKAETLFYTKSLNKIGITFQASQWKTYKSGIEPFVRTG 195 Query: 171 -NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLIDVVG 228 + + ++ + +++D Y ++ S+ R I D + D + + +A ++GL D + Sbjct: 196 ASSEYLEQIGELLDDVYDDYLGYASKRRGISRDSLQAVIDNMALLSAKKAVQLGLADGIA 255 Query: 229 GQEEVWQSLYAL 240 + +SL Sbjct: 256 SSWALNRSLAGK 267 >gi|240013099|ref|ZP_04720012.1| putative protease [Neisseria gonorrhoeae DGI18] gi|240122291|ref|ZP_04735253.1| putative protease [Neisseria gonorrhoeae PID24-1] Length = 328 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 129/290 (44%), Gaps = 21/290 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57 K I L LV L F N+PH A + + G+I + ++ ++++ Sbjct: 45 KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGKIGNGVEDQVKKLKDGM 104 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLI 114 E + A A+++ +SPGGS F I+++K + P V +M AS Y I Sbjct: 105 EAAYKKPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A++ I A +S+VGSIGV+ ++K+GV + + K PFS P+ Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQ 224 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++ ++++ + F++ V R + + GR++TGA+A KVGL+D +G Sbjct: 225 SKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS 284 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKNLSISSLLEDTIPLMK 280 V + + + D+ P ++ + + + + + ++ Sbjct: 285 VARDVVK------APDVVDYTPKDDFGRILGRRFGAELKASVSEALQAVR 328 >gi|165976686|ref|YP_001652279.1| protease IV, signal peptide peptidase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876787|gb|ABY69835.1| protease IV, signal peptide peptidase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 618 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 129/266 (48%), Gaps = 12/266 (4%) Query: 33 DNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 +A + + GQI S +++ + + DD+ +I+ ++SPGGSA A Sbjct: 321 QAEHKIAVVNVEGQIISGESDASSSGSDTIVKLLRKAREDDNVRGVILRVNSPGGSALAS 380 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + +++++ KPV+ + MAAS GY IS S+ I+A+ T++ GSIG+ + Sbjct: 381 EIIRQEVEEIQKAGKPVVASMGGMAASGGYWISATSDKIIASPTTITGSIGIFGLATSFE 440 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LGV+ + SP + SP + + +++Q +++ Y F+ LVS RN+ Sbjct: 441 KTAKNLGVTEDGISLSPFASS-SPLKTLPKEQAEVIQISIENGYDRFLELVSRGRNMSKQ 499 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261 ++ G++W+G +A K GL+D +G + ++ L + + ++ W Sbjct: 500 AVDKIAQGQVWSGEDALKHGLVDELGDFTAAYSAVTELVNQRRKANNEAEIEHFRSQWMI 559 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287 D + SLL+ + + + GL Sbjct: 560 DSDDSLFGSLLKGSKLKFQLSSWLGL 585 Score = 83.5 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 96/289 (33%), Gaps = 46/289 (15%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV----------ARIAIRGQIEDSQ-- 51 + + I+ + L + +V F++ + + S + + G + D+ Sbjct: 11 IFRCIREFVMSLFFIIFVLVCFAFLALINQESGSTKHTNFIEKGALTLNLDGYLADNHDK 70 Query: 52 -----------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIF 87 +++ I + ++D+ T L++ L+ G A I Sbjct: 71 YGDLHRLVQAELGNHEPIKISTFDVVRAIAKAAKDERITGLVLDLAYFQGGDSASLHFIG 130 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 I + K + V E + Y ++ ++ I + V + Y K LDK Sbjct: 131 NEINEFKKSGKPVIAVGEQYSQPQYYLASFADKIYLNKAGFVDIHALSHSNVYFKTLLDK 190 Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204 + + K+ PF +++ +A Q Q + S +H + ++++R IP ++ Sbjct: 191 IEAEPHIFRVGTYKSAVEPFIRDDMSAEAKQNAQTWLTSIWHNIRQDIAQNRKIPAEQVL 250 Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + A L+ + ++ +L Sbjct: 251 LDSQTYIEKYRQLKGDDAQYALSQQLVTDIATNAQIQTALVERFGKDKD 299 >gi|159476306|ref|XP_001696252.1| signal peptide peptidase [Chlamydomonas reinhardtii] gi|158282477|gb|EDP08229.1| signal peptide peptidase [Chlamydomonas reinhardtii] Length = 744 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 118/238 (49%), Gaps = 17/238 (7%) Query: 31 VEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALIVSLS 74 P VA + G I D+ +L ++ ++ D A++V ++ Sbjct: 400 ARKGQPKVAVVTAAGTIVQGPVPPTGPGANQQVIDATKLSAQLNQLLEDPDVRAVVVRVN 459 Query: 75 SPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 SPGGSA A ++I+ +Q+++ KPV+ + ++AAS GY I+ A++ +VA ++ GSIG Sbjct: 460 SPGGSALASDSIYHELQRLRAAGKPVVVSMGDVAASGGYYIAAAADAVVAQPGTVTGSIG 519 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V+ V L+ +GV + V SPF+ + P+ ++ +VD Y F+ V Sbjct: 520 VVAGKINVGRTLEDVGVRSEGVTVGRNADMLSPFTGLAPEQAAQVEALVDHVYDDFLDKV 579 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 ++SR P + L+ GR++TG +A +GL+D +GG E AL + + Sbjct: 580 AKSRGRPVSEVRQLAKGRVYTGQQAYDIGLVDQLGGLEAAVSRAKALAKLPEDVAVVE 637 Score = 37.3 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 28/264 (10%), Positives = 78/264 (29%), Gaps = 26/264 (9%) Query: 52 ELIERIERISRDDSATALIVSLSSPG--GSAYAGEAIFRAIQKVK-------NRKPVITE 102 +++ ++R + D L+ + + G + + AI + + Sbjct: 102 KVVAALKRAAGDSRCRGLVTYVGARENLGGLATVQEVRDAISNFRLHLAAAAAGRGAGGG 161 Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVL-------------FQYPYVKPFLDKLG 149 ++ + + + A +L + + +P LD+L Sbjct: 162 GGGGSSGSSFPAAVAFAASFGEAGGSGMVPYLLASACDRVYVQPSGGRAFFARPLLDRLR 221 Query: 150 VSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 K+ + F E + + MQ ++ + ++ +R + Sbjct: 222 AEPYFFAREEFKSAANTFRESGLTEPQRENMQALLGDLAGQMMSAMAAARGVDGAAVREA 281 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQ-SLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 + A A + GL+D ++EV + + + + + + + Sbjct: 282 VEAAPLLPAAALRRGLLDGTKYKDEVQSLYVISDKALAEEKAKQGAKHRRRQDDNRMVRV 341 Query: 267 SISSLLE-DTIPLMKQTKVQGLWA 289 I ++ + + G A Sbjct: 342 PIDKYIQVTELQAAAAARGSGWLA 365 >gi|290980063|ref|XP_002672752.1| predicted protein [Naegleria gruberi] gi|284086331|gb|EFC40008.1| predicted protein [Naegleria gruberi] Length = 660 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 125/280 (44%), Gaps = 16/280 (5%) Query: 29 SHVEDNSPHVARIAIRGQI------------EDSQELIERIERISRDDSATALIVSLSSP 76 + + + VA I G I +S +++ I + +D +++ + SP Sbjct: 335 NPKKKDDNLVAVIYASGAIVRGRPSNPRDTNMNSNVIVDAIYKARKDKEVKVILIRVDSP 394 Query: 77 GGSAYAGEAIFRAIQ--KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG A E I R I+ + +++K V+ + +AAS GY IS + IV ++ GSIGV Sbjct: 395 GGEVSASEVIRREIELARTEDKKKVVISMGGLAASGGYWISLPGDKIVCNPFTITGSIGV 454 Query: 135 LFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + Y+ F KLGV+ SV +S S F N + +++ ++ D Y F+ V Sbjct: 455 IMGKLYLGDFFSKKLGVTNDSVSTSKNAGLLSQFERANDQQMEIFNNLADDFYDSFLEKV 514 Query: 194 SESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 SE RNI D ++ G+++ G AK + L+D VG + Q L ++ I + Sbjct: 515 SERRNISKDDLKNNIAKGKVYLGNSAKALNLVDSVGDFYDALQVAKELAGMKNEPHIVVF 574 Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 +P K L N S ++ + + +++ Sbjct: 575 HPKKKSVIESLLNTQSPSNSKERALKSNVSIFEPFTSLYQ 614 >gi|294782115|ref|ZP_06747441.1| protease IV [Fusobacterium sp. 1_1_41FAA] gi|294480756|gb|EFG28531.1| protease IV [Fusobacterium sp. 1_1_41FAA] Length = 551 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 113/239 (47%), Gaps = 11/239 (4%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70 ++ + +A I + G+I + ++E++E + + L+ Sbjct: 267 FVEYISAYKRKKNKSKNTIAVINLEGEIDIRESRESVINYDNVVEKLEVLEDIKNLKGLV 326 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + ++SPGGSA E I++ ++K+ P+ + ++ AS GY I+ + A +L G Sbjct: 327 LRINSPGGSALESEKIYQKLKKL--EIPIYISMGDLCASGGYYIATVGKKLFATSVTLTG 384 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ YP ++KL V+++ FS+++ ++ + + ++ Y F Sbjct: 385 SIGVVILYPEFTEIINKLKVNMEGFSKGKGFDIFDVFSKLSEESKEKIIYSMNEVYSEFK 444 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V ++RNI + ++ GR+W G++AK+ GL+D +G + SL + + + Sbjct: 445 EHVMQARNISEEDLEKIAGGRVWLGSQAKENGLVDELGTLNDCIDSLAKDLELKDFKLV 503 Score = 71.6 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 56/286 (19%), Positives = 113/286 (39%), Gaps = 16/286 (5%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 V +K K + + +SL + V F+ VED V+ ++I + +++ +E + Sbjct: 27 LVKRKFKNKDI-ISLKGVKTVVFNIGDLVEDYM--VSAVSINKAL-SHDIVLKALENLVD 82 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D +I+ + S E I +K+ K +I + + A+ I + Sbjct: 83 DKKIEKIIIDVDEIDLSRVHIEEIKEIFKKLSADKEIIAIGTTFDEYSYQIALLANKIYM 142 Query: 123 AA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQ 179 + S + G ++ PY K L LGV++ ++ K E ++ + + + Sbjct: 143 LNTKQSCLYFRGYEYKEPYFKNILATLGVTVNTLHIGDYKVAGESFSHDKMTEEKKESLV 202 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG--AEAKKVGLIDVVGGQEEVWQSL 237 ++ ++ + F+ LV E R D T + G + +AK++GLID + EE Sbjct: 203 NIKETLFQNFINLVKEKRK--VDITNEILSGDLIFANSEKAKELGLIDGLSTYEE----- 255 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 + D+ ++ KN LE I + + + Sbjct: 256 IGVDYDEDTVDFVEYISAYKRKKNKSKNTIAVINLEGEIDIRESRE 301 >gi|320103655|ref|YP_004179246.1| signal peptide peptidase SppA, 36K type [Isosphaera pallida ATCC 43644] gi|319750937|gb|ADV62697.1| signal peptide peptidase SppA, 36K type [Isosphaera pallida ATCC 43644] Length = 369 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 132/290 (45%), Gaps = 19/290 (6%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATA 68 VV + V VA I + G I ++ + E++ +RD + A Sbjct: 69 VVAVAVEPGVPVECAKVALIDLDGLIANAPMAGFFSLGDNPVATVSEKLAAAARDPTIMA 128 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAET 126 ++V ++SPGG A +A++R +Q ++R KP + + ++ A GY ++ + IVAA Sbjct: 129 VVVRINSPGGGVAATDALWREVQSFRSRTRKPTVAAIIDVGAGGGYYLAAGCDRIVAAPG 188 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 +++G IGV+ VK + + V +S+K+ S ++ ++ Q++Q++ D + Sbjct: 189 AIIGGIGVVLNLYNVKDLMAQFNVFSQSIKAGDKIDLGSSVEPLDDESRQLLQEMADEYH 248 Query: 187 HWFVRLVSESR-NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 F ++V R + + DGRI + A ++GLID +G E+ + L Sbjct: 249 ERFKQVVRRGRPGLTPQAEPLAFDGRIMSARRALELGLIDEIGHLEDALATARTLAGVPD 308 Query: 246 IRKI--KDWNPPKNYWFCDLKNLSISS-LLEDTIPLMKQTKVQGLWAVWN 292 + + + N I + LL +IP +++ K+ G +W Sbjct: 309 AVPVLFRRRGDAAYSLYAVTPNTPIQNQLLPFSIPGVERAKLPGFLYLWQ 358 >gi|327404497|ref|YP_004345335.1| signal peptide peptidase SppA, 67K type [Fluviicola taffensis DSM 16823] gi|327320005|gb|AEA44497.1| signal peptide peptidase SppA, 67K type [Fluviicola taffensis DSM 16823] Length = 592 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 114/246 (46%), Gaps = 6/246 (2%) Query: 30 HVEDNSPHVARIAIRGQI------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 + ++A I G I S E+ + + DD ++ ++SPGGSA A Sbjct: 304 SDGSATANIAVIVGEGGITVDGDEMTSDEICKYFREVRNDDDIKVVVFRVNSPGGSALAS 363 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 E I+R + +K VI + ++AAS GY ++ ++ I A T++ GSIGV PY Sbjct: 364 EEIWREVSLTTKKKKVIVSMGDVAASGGYYVATPASTIFAEPTTITGSIGVFGVIPYTGG 423 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 F++ + + S +++P+ + ++Q VD Y F + V++ R + D+ Sbjct: 424 FMENKLGLTFDRVQTNKHSVLSTNRKLSPEELTLIQGEVDQIYLQFKKRVADGRGLKIDQ 483 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ GR+WTGA+A K+GL+D +GG + + + I ++ Sbjct: 484 VHRIARGRVWTGADALKIGLVDKLGGFNDALAFAIKEAKVKKAQVIYYPKVKEDPIEDLF 543 Query: 264 KNLSIS 269 + LS Sbjct: 544 EQLSKE 549 Score = 88.9 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 100/294 (34%), Gaps = 26/294 (8%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQI------------------EDSQELIERIE 58 + L V + + + V + + G I +++ +E Sbjct: 28 IFWLIVFGSIFGNEPDSKDSSVLHMTLAGAIGERSSSSINPSSISMDKTTGLADILMGLE 87 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV--HEMAASAGYLISC 116 + D + + L + I ++ K I E+ Y IS Sbjct: 88 KAKEDKRVKGIYLELGNVQCGYATAMEIRNGLKDFKKSGKFIVAYLNGEVITQKQYYISS 147 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV----KSSPMKAEPSPFSEVNP 172 SN + TS + IG+ + + K DKLG+ ++ + EP ++++ Sbjct: 148 VSNEVYGFSTSAMEFIGLGGELMFFKNTFDKLGIEMQVIRGSNNDFKSAVEPYFRTDMSD 207 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQE 231 + Q + S + ++ R + + + + +I +A K+ LID ++ Sbjct: 208 SSRVQTQRYMSSIWEDVRSQIAADRKVTAAQLNDIAENAKIQRVDDAVKLKLIDGAKYRD 267 Query: 232 EVWQSLYALGVDQSIRKIKDWN-PPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 EV + + ++++ I + K + S S + ++ + + Sbjct: 268 EVEEIVLKKSGLKNLKDIMAFEDYAKKGFKNKQLAYSDGSATANIAVIVGEGGI 321 >gi|294617411|ref|ZP_06697045.1| Putative signal peptide peptidase sppA [Enterococcus faecium E1679] gi|291596317|gb|EFF27576.1| Putative signal peptide peptidase sppA [Enterococcus faecium E1679] Length = 341 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 63/255 (24%), Positives = 123/255 (48%), Gaps = 16/255 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSP 76 D++ + ++++ G I + +E+++ I D + + + ++SP Sbjct: 53 EEGDSTQKIVKLSVDGTIAAGGSSGLFASEGYNHKNFMEQLKAIEEDPTVKGIFLEVNSP 112 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG Y I + + ++ P+ + MAAS GY IS ++ I A E ++ GSIGV Sbjct: 113 GGGVYESAEIAKKLDTIRKEHDIPMYVSMKNMAASGGYYISAQADKIFATEETVTGSIGV 172 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + L+KLGV +VKS +K S + ++Q +DS+Y FV +VS Sbjct: 173 IMSGLNYSGLLEKLGVEDTTVKSGALKDMGSGTRPETKEEETVLQAYIDSAYSRFVAIVS 232 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 E RN ++ ++DGRI+ G +AK+VGL+D +G E+ +++ + ++ +++ Sbjct: 233 EGRNKSEEEVKKIADGRIYDGVQAKEVGLVDELGFPEDALKAMRKEQQLEDA-ELVEYSS 291 Query: 255 PKNYWFCDLKNLSIS 269 + + ++ Sbjct: 292 APSGFASTWLGSKLA 306 >gi|194477179|ref|YP_002049358.1| signal peptide peptidase SppA (protease IV) [Paulinella chromatophora] gi|171192186|gb|ACB43148.1| signal peptide peptidase SppA (protease IV) [Paulinella chromatophora] Length = 276 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 63/262 (24%), Positives = 131/262 (50%), Gaps = 8/262 (3%) Query: 37 HVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 +ARI + G I + ++ + + + +++ + SPGG+ + I A+ +++ Sbjct: 12 KIARICLEGPITGVVREWMLSVLRNVEE-QRMSGILLRIDSPGGTVGDSQEIHAALLRLR 70 Query: 95 NRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 N+ V+ ++AS G I A++ IV+ ++ GSIGV+ + + L+++G+ + Sbjct: 71 NKGCKVVASFGNISASGGVYIGVAADKIVSNPGTITGSIGVVLRGNNLAKLLERIGIRFE 130 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 ++KS K SP ++P ++QD++DSSY+ FV +++ R + DGRI+ Sbjct: 131 TIKSGIYKDILSPDRALSPAERNVLQDLIDSSYNQFVAAIAQGRGLKESFVREFGDGRIF 190 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSISSLL 272 +GA+A +GL+D +G +E Q L L + K ++ + + N +I S Sbjct: 191 SGAQALDLGLVDALGDEETALQLLSQLADVDLNQTKTLTFSRYGSKTKQSIMNENIFSKF 250 Query: 273 EDTIPLMKQTKVQGLWA---VW 291 + + + ++ W+ +W Sbjct: 251 QQAFKIQQALSLELDWSGQALW 272 >gi|329768602|ref|ZP_08260088.1| hypothetical protein HMPREF0428_01785 [Gemella haemolysans M341] gi|328836476|gb|EGF86137.1| hypothetical protein HMPREF0428_01785 [Gemella haemolysans M341] Length = 327 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 55/228 (24%), Positives = 112/228 (49%), Gaps = 9/228 (3%) Query: 30 HVEDNSPHVARIAIRGQIEDSQ-------ELIERIERISRDDSATALIVSLSSPGGSAYA 82 D+S + +I+I G+I ++ +I+ + + A+++S++SPGG Y Sbjct: 61 KKGDSSQVIQKISIEGEINSEMTNTYSRGSVLNQIKEAKGNPNVKAILLSVNSPGGGVYE 120 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 ++ A++ + K V + + AAS GY +S + I + GS+GV+ Y + Sbjct: 121 TAELYNALK--NSGKDVYVSMKKTAASGGYYVSTPAKKIFVNTETTTGSLGVIMSYVSAQ 178 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 FL+ G+ ++V+S KA ++ +++Q+ +Y FV+ ++E R++ D Sbjct: 179 KFLNDHGIKQETVRSGDQKAVGGLTEDLPESTRKILQEQNKEAYERFVKAIAEGRHLSED 238 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 + L+DGR +TG +A L D +G ++E+ + + I+ Sbjct: 239 EVKKLADGRTYTGTQAVANKLADKIGTEDELIDLIKEEKGLSNPTVIE 286 >gi|227501017|ref|ZP_03931066.1| S49 family peptidase [Anaerococcus tetradius ATCC 35098] gi|227216790|gb|EEI82188.1| S49 family peptidase [Anaerococcus tetradius ATCC 35098] Length = 327 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 64/268 (23%), Positives = 128/268 (47%), Gaps = 6/268 (2%) Query: 30 HVEDNSPHVARIAIRGQIEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + + + + G I+ ++ ++ D +I++++SPGGS YA E I Sbjct: 55 QGSNPKEKIKVVDVDGVIKADDANDFVVSELKDAKDDPLVKGVILNVNSPGGSVYASERI 114 Query: 87 FRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 AI+ +K K + + +MAAS GY IS +N I A+ + GSIGV+ Q ++ Sbjct: 115 ANAIKALKKAKKPVYTVMGQMAASGGYYISAPTNRIYASNETWTGSIGVIIQSYSLQGLF 174 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 DK G+ +++ + MK S ++N + + Q +V+S++ FV++V E R + + Sbjct: 175 DKYGIKEQNITTGKMKDAGSQGRDMNKEEKEYFQGLVNSAFDRFVKIVVEGRGLSEKEVR 234 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP--PKNYWFCDL 263 ++DGR++ G++A +GL+D +G + + + I++ N + F Sbjct: 235 KIADGRVYDGSQALSLGLVDKIGDIDSAISDMISDNKLGDPMVIRNDNVMGSLSSLFSKA 294 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWAVW 291 ++L S + + + G ++ Sbjct: 295 RDLRKSYSDLAVLEKLMKENNIGPMYLY 322 >gi|307257321|ref|ZP_07539091.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864171|gb|EFM96084.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 618 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 129/266 (48%), Gaps = 12/266 (4%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 +A + + GQI S +++ + + DD+ +I+ ++SPGGSA A Sbjct: 321 QAEHKIAVVNVEGQIISGESDASSAGSDTIVKLLRKAREDDNVRGVILRVNSPGGSALAS 380 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + +++++ KPV+ + MAAS GY IS S+ I+A+ T++ GSIG+ + Sbjct: 381 EIIRQEVEEIQKAGKPVVASMGGMAASGGYWISATSDKIIASPTTITGSIGIFGLATSFE 440 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LGV+ + SP + SP + + +++Q +++ Y F+ LVS RN+ Sbjct: 441 KTAKNLGVTEDGISLSPFASS-SPLKTLQKEQAEVIQISIENGYDRFLELVSRGRNMSKQ 499 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261 ++ G++W+G +A K GL+D +G + ++ L + + ++ W Sbjct: 500 AVDKIAQGQVWSGEDALKHGLVDELGDFTAAYSAVTELVNQRRKANNEAEIEHFRSQWMI 559 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287 D + SLL+ + + + GL Sbjct: 560 DSDDSLFGSLLKGSKLKFQLSSWLGL 585 Score = 83.1 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 96/289 (33%), Gaps = 46/289 (15%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV----------ARIAIRGQIEDSQ-- 51 + + I+ + L + +V F++ + + S + + G + D+ Sbjct: 11 IFRCIREFVMSLFFIIFVLVCFAFLALINQESGSTKHTNFIEKGALTLNLDGYLADNHDK 70 Query: 52 -----------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIF 87 +++ I + ++D+ T L++ L+ G A I Sbjct: 71 YGDLHRLVQAELGNHEPIKISTFDVVRAIAKAAKDERITGLVLDLAYFQGGDSASLHFIG 130 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 I + K + V E + Y ++ ++ I + V + Y K LDK Sbjct: 131 NEISEFKKSGKPVIAVGEQYSQPQYYLASFADKIYLNKAGFVDIHALSHSNVYFKTLLDK 190 Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204 + + K+ PF +++ +A Q Q + S +H + ++++R IP ++ Sbjct: 191 IEAEPHIFRVGTYKSAVEPFIRDDMSAEAKQNAQTWLTSIWHNIRQDIAQNRKIPAEQVL 250 Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + A L+ + ++ +L Sbjct: 251 LDSQTYIEKYRQLKGDDAQYALSQQLVTDIATNAQIQTALVERFGKDKD 299 >gi|257875577|ref|ZP_05655230.1| protease/peptidase [Enterococcus casseliflavus EC20] gi|257809743|gb|EEV38563.1| protease/peptidase [Enterococcus casseliflavus EC20] Length = 343 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 64/255 (25%), Positives = 118/255 (46%), Gaps = 15/255 (5%) Query: 31 VEDNSPHVARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPG 77 D + R+++ G I S +E + I D + +++ +++PG Sbjct: 57 AGDQDNRIVRLSLEGTIASSSSGGLFTTESYDHQRFLEELRMIQEDPTIGGILMEVNTPG 116 Query: 78 GSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 G Y I R + K+K P+ + MAAS GY IS ++ I A + ++ GSIGV+ Sbjct: 117 GGVYESAEIARELAKIKELGIPMYVSMKNMAASGGYYISAGADKIFATDETITGSIGVIM 176 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 +KLG+ + KS +K S + +++Q VD++Y FV++V+E Sbjct: 177 SGLNYAGLFEKLGIEDNTYKSGALKDVGSATRKPTEADKEVLQTYVDNAYGRFVKIVAEG 236 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R + + ++DGRI+ G +A VGL+D +G E+ ++ A + +I ++ Sbjct: 237 RGMTEEAVRKIADGRIYDGQQAVSVGLVDEIGFPEDTLAAMQADLGLEDA-EIFSYDVSS 295 Query: 257 NYWFCDLKNLSISSL 271 + S++ L Sbjct: 296 TGFASTWLGSSLAEL 310 >gi|257459261|ref|ZP_05624378.1| signal peptide peptidase SppA, 36K type [Campylobacter gracilis RM3268] gi|257443360|gb|EEV18486.1| signal peptide peptidase SppA, 36K type [Campylobacter gracilis RM3268] Length = 290 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 69/278 (24%), Positives = 126/278 (45%), Gaps = 7/278 (2%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 + F+ K K+ + + + F+ + ++A++++ G I D E++E+IE + Sbjct: 15 LGFINKYFKSL----IFLLILFLIFAGGESAQQKGANLAQLSLSGAIMDDSEILEKIEAL 70 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 D++ +++ + SPGG+ I AI+ + +RKPV+ AS YL ++ Sbjct: 71 KNDEAIKGVLLLIDSPGGALSPSVEISLAIKSLNSRKPVVAYAKGTMASGSYLGGVWASK 130 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 I A S +GSIGV+ Q V KLG + + VK+ +K + + + +Q Sbjct: 131 IYANPGSFIGSIGVIMQGLDVSEAAAKLGFAEQIVKAGELKEAGTMMRKWSDAERASLQA 190 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +VD SY F R V+++R++ K ++ R++ + AK VGLID VG ++ +L Sbjct: 191 LVDESYELFTREVAQARSLDIRKRDTWANARVFLASGAKGVGLIDEVGSLDDAKSALVKA 250 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278 + K D SL+ Sbjct: 251 SGVADPIWQEPSAYEK---MMDRLANKSESLVRGAFGA 285 >gi|325856625|ref|ZP_08172263.1| signal peptide peptidase SppA, 67K type [Prevotella denticola CRIS 18C-A] gi|325483339|gb|EGC86314.1| signal peptide peptidase SppA, 67K type [Prevotella denticola CRIS 18C-A] Length = 592 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 69/276 (25%), Positives = 123/276 (44%), Gaps = 16/276 (5%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------------SQELIERIERISRD 63 V++T + +++ +A G I D +Q + + +E + +D Sbjct: 286 VSVTDLKNIEDESQKEDDNQIAIYYAYGDIVDGAAGGMFAQGHKIDAQTVCKDLEALGKD 345 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 A+++ ++S GGSAYA E I+ I K+K KPV+ + MAAS GY +S +N IVA Sbjct: 346 KDVKAVVLRINSGGGSAYASEQIWHQIMKLKKLKPVVVSMGGMAASGGYYMSAPANWIVA 405 Query: 124 AETSLVGSIGVLFQYPYVKP-FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 T++ GSIG+ +P F +KLGV VK++ + + + + V Sbjct: 406 EPTTITGSIGIFGMFPDASGLFAEKLGVKFDEVKTNRHSDFGTQARPFTEEEMAFLGQYV 465 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 D Y F V+E R + ++ ++ G ++TG +A+K+GL+D +GG + L Sbjct: 466 DRGYRLFRHRVAEGRRMTDEQVEKIAQGHVFTGQDARKIGLVDQLGGLDVALMKAAKLAK 525 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278 + L+ + L + + Sbjct: 526 LSG-YSTCSYPEEPGIIEQLLEQTKPDNYLSEQLRA 560 Score = 94.7 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 103/283 (36%), Gaps = 34/283 (12%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYF----------SWSSHVEDNSPHVARIAIRGQIE-- 48 M+ K + +V + L ++ + +F S + E + V + + GQ+ Sbjct: 1 MKQFFKFVFASFVGMLLFSIVMAFFALITVAGMIASQDATKEPEANSVLVLNLSGQLTER 60 Query: 49 -----------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 L+E I + ++ + + + + +YA +A+ A+ Sbjct: 61 GEDNIISQLQGSTTGSIGLDNLLEGIHKAKKNGNIKGIYIEAGAFAADSYASMQALRNAL 120 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 K I + Y ++ A++ + + G+ Q ++K L K+GV Sbjct: 121 LDFKKSGKWIIAYGDTYTQGTYYLASAADKVYLNPQGQIDWHGLASQPVFIKDLLAKVGV 180 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 ++ VK K+ P F ++ + ++S + + V SR + + + Sbjct: 181 KMQVVKVGAYKSAPEMFTGDRMSDANREQTAAYLNSIWGNITKEVGASRQLSVVQLNAYA 240 Query: 209 DGRIWTGAEAK--KVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 D I A A K+ L+D + +++ + S + I Sbjct: 241 DSMITFAAPADYVKMKLVDGLVYTDQMKDLVKKQLGLPSDKDI 283 >gi|320539622|ref|ZP_08039286.1| protease IV (signal peptide peptidase) [Serratia symbiotica str. Tucson] gi|320030234|gb|EFW12249.1| protease IV (signal peptide peptidase) [Serratia symbiotica str. Tucson] Length = 618 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 65/271 (23%), Positives = 122/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPGGS 79 + +A + G I D + ++ D A+++ ++SPGGS Sbjct: 319 KPADTQGDEIAVVFANGAIIDGPQAAGTVGDDTTAAELRQVRLDPIIKAVVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + +++ KPV+ + MAAS GY IS ++ I+A+ ++L GSIG+ Sbjct: 379 VSASEVIRAELAEIRAAGKPVVVSMGGMAASGGYWISTPADYIIASPSTLTGSIGIFGII 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + LD +GV V +SP+ + + P Q+MQ ++ Y F+ LV+++R Sbjct: 439 NTYERTLDSIGVHTDGVATSPLADITAT-KALPPAFSQIMQLSIEHGYKNFIDLVAKARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + + ++ G +W G++AK GL+D +G ++ + + L K+ + + Sbjct: 498 MVPQQVDQIAQGHVWLGSDAKANGLVDQLGDFDDAVKKVAELAKL-KQWKLNWFVDTPSL 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 L + S S + +P Q + A Sbjct: 557 TEMVLSHFSGS--IHAMLPAAIQAILPAPLA 585 Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 38/276 (13%), Positives = 89/276 (32%), Gaps = 44/276 (15%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDSQ---------------------------ELIER 56 YF S+ + + G + D EL+ Sbjct: 44 YFQNSTTPAIPEHGALLVDLSGVVVDQPSMNNKIRQWGRELLSASSNRLQENSLFELVSS 103 Query: 57 IERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 I + D + T +++ L+ GG+ I +A+++ ++ I + + + Y ++ Sbjct: 104 IRKAKDDKTITGMVLQLNDFGGADQPSLHYIGKALREFRDSGKPIIAIGDSYSQMQYYLA 163 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FSEVNPK 173 +N I + V G Y K L+ V+ + K+ P +++ Sbjct: 164 SYANRIYLSPQGSVDLRGFASNNLYYKSLLEMFKVTSHIFRVGTYKSAVEPLIRDDMSLA 223 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKT----LVLSDGRIWTGAE----AKKVGLID 225 A + + + ++ V+ +R + + + G +G + A L+D Sbjct: 224 AREADSRWIGGLWQNYLDTVAANRQLTPQQLFPGADNVLSGLQASGGDTACYALDNKLVD 283 Query: 226 VVGGQEEVWQSLY------ALGVDQSIRKIKDWNPP 255 + + + L + + I D+ Sbjct: 284 ELASRTAIEDQLVKTFGWNKRANNFNAISIYDYQLK 319 >gi|322380240|ref|ZP_08054461.1| protease IV (PspA) [Helicobacter suis HS5] gi|321147318|gb|EFX41997.1| protease IV (PspA) [Helicobacter suis HS5] Length = 292 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 63/277 (22%), Positives = 126/277 (45%), Gaps = 3/277 (1%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64 L+ I + L L+ + V + P++A++ + G I +S+ ++I +I ++ Sbjct: 19 LEFITRYFKALVLLLIVAVLLISTKGTTTQKPNLAKLYLYGPIFESESFQDQINKILQNP 78 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 S ++ + SPGG+ A + + + + PV+ V + AS Y ++ I A Sbjct: 79 SIKGALLMIDSPGGTISASVELSDMVASLAKKMPVVAYVRGVMASGSYYAGMMASKIYAN 138 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 +L+GSIGV+F + P +DKLG+ + V K + E P+ Q + +++ Sbjct: 139 RGALIGSIGVIFSGVNIAPLMDKLGIKTQGVAKGAYKEVGTFMREWTPQEKQYLNGLLNE 198 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 Y FV V+++R++ ++G+I++ +A + LID V +E ++L L + Sbjct: 199 QYGMFVSDVAKARHLDPKDAPAFAEGKIFSAKQALFLKLIDRVSTYDEAIKALEHLSAVK 258 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 + ++ F D S S L + + Sbjct: 259 NPIWLQKDKLE---IFMDKFFKSSSQALAQVLSYQMR 292 >gi|303252103|ref|ZP_07338272.1| protease 4 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248290|ref|ZP_07530316.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649085|gb|EFL79272.1| protease 4 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855224|gb|EFM87401.1| Protease 4 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 618 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 129/266 (48%), Gaps = 12/266 (4%) Query: 33 DNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 +A + + GQI S +++ + + DD+ +I+ ++SPGGSA A Sbjct: 321 QAEHKIAVVNVEGQIISGESDASSSGSDTIVKLLRKAREDDNVRGVILRVNSPGGSALAS 380 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + +++++ KPV+ + MAAS GY IS S+ I+A+ T++ GSIG+ + Sbjct: 381 EIIRQEVEEIQKAGKPVVASMGGMAASGGYWISATSDKIIASPTTITGSIGIFGLATSFE 440 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LGV+ + SP + SP + + +++Q +++ Y F+ LVS RN+ Sbjct: 441 KTAKNLGVTEDGISLSPFASS-SPLKTLQKEQAEVIQISIENGYDRFLELVSRGRNMSKQ 499 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261 ++ G++W+G +A K GL+D +G + ++ L + + ++ W Sbjct: 500 AVDKIAQGQVWSGEDALKHGLVDELGDFTAAYSAVTELVNQRRKANNEAEIEHFRSQWMI 559 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287 D + SLL+ + + + GL Sbjct: 560 DSDDSLFGSLLKGSKLKFQLSSWLGL 585 Score = 83.1 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 96/289 (33%), Gaps = 46/289 (15%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV----------ARIAIRGQIEDSQ-- 51 + + I+ + L + +V F++ + + S + + G + D+ Sbjct: 11 IFRCIREFVMSLFFIIFVLVCFAFLALINQESGSTKHTNFIEKGALTLNLDGYLADNHDK 70 Query: 52 -----------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIF 87 +++ I + ++D+ T L++ L+ G A I Sbjct: 71 YGDLHRLVQAELGNHEPIKISTFDVVRAIAKAAKDERITGLVLDLAYFQGGDSASLHFIG 130 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 I + K + V E + Y ++ ++ I + V + Y K LDK Sbjct: 131 NEISEFKKSGKPVIAVGEQYSQPQYYLASFADKIYLNKAGFVDIHALSHSNVYFKTLLDK 190 Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204 + + K+ PF +++ +A Q Q + S +H + ++++R IP ++ Sbjct: 191 IEAEPHIFRVGTYKSAVEPFIRDDMSAEAKQNAQTWLTSIWHNIRQDIAQNRKIPAEQVL 250 Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + A L+ + ++ +L Sbjct: 251 LDSQTYIEKYRQLKGDDAQYALSQQLVTDIATNAQIQTALVERFGKDKD 299 >gi|327313455|ref|YP_004328892.1| signal peptide peptidase SppA, 67K type [Prevotella denticola F0289] gi|326946213|gb|AEA22098.1| signal peptide peptidase SppA, 67K type [Prevotella denticola F0289] Length = 592 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 69/276 (25%), Positives = 123/276 (44%), Gaps = 16/276 (5%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------------SQELIERIERISRD 63 V++T + +++ +A G I D +Q + + +E + +D Sbjct: 286 VSVTDLKNIEDESQKEDDNQIAIYYAYGDIVDGAAGGMFAQGHKIDAQTVCKDLEALGKD 345 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 A+++ ++S GGSAYA E I+ I K+K KPV+ + MAAS GY +S +N IVA Sbjct: 346 KDVKAVVLRINSGGGSAYASEQIWHQIMKLKKLKPVVVSMGGMAASGGYYMSAPANWIVA 405 Query: 124 AETSLVGSIGVLFQYPYVKP-FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 T++ GSIG+ +P F +KLGV VK++ + + + + V Sbjct: 406 EPTTITGSIGIFGMFPDASGLFAEKLGVKFDEVKTNQHSDFGTQARPFTEEEMAFLGQYV 465 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 D Y F V+E R + ++ ++ G ++TG +A+K+GL+D +GG + L Sbjct: 466 DRGYRLFRHRVAEGRRMTDEQIEKIAQGHVFTGQDARKIGLVDQLGGLDVALMKAAKLAK 525 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278 + L+ + L + + Sbjct: 526 LSG-YSTCSYPEEPGIIEQLLEQTKPDNYLSEQLRA 560 Score = 94.7 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 102/283 (36%), Gaps = 34/283 (12%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYF----------SWSSHVEDNSPHVARIAIRGQIE-- 48 M+ K + +V + L ++ + +F S + E + V + + GQ+ Sbjct: 1 MKQFFKFVFASFVGMLLFSIVMAFFALITVAGMIASQDTTKEPEANSVLVLNLSGQLTER 60 Query: 49 -----------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 L+E I + +D+ + + + +YA +A+ + Sbjct: 61 GEDNIISQLQGSTTGSIGLDNLLEGIHKAKNNDNIKGIYIEAGAFAADSYASMQALRNVL 120 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 K I + Y ++ A++ + + G+ Q ++K L K+GV Sbjct: 121 LDFKKSGKWIIAYGDTYTQGTYYLASAADKVYLNPQGQIDWHGLASQPVFIKDLLAKVGV 180 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 ++ VK K+ P F ++ + ++S + + V SR + + + Sbjct: 181 KMQVVKVGAYKSAPEMFTGDRMSDANREQTAAYLNSIWGNITKEVGASRQLSVVQLNAYA 240 Query: 209 DGRIWTGAEAK--KVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 D I A A K+ L+D + +++ + S + I Sbjct: 241 DSMITFAAPADYVKMKLVDGLVYTDQMKDVVKKQLGLPSDKDI 283 >gi|257882895|ref|ZP_05662548.1| protease/peptidase [Enterococcus faecium 1,231,502] gi|257889327|ref|ZP_05668980.1| protease/peptidase [Enterococcus faecium 1,231,410] gi|257894340|ref|ZP_05673993.1| protease/peptidase [Enterococcus faecium 1,231,408] gi|258616002|ref|ZP_05713772.1| protease/peptidase protein [Enterococcus faecium DO] gi|260560062|ref|ZP_05832240.1| conserved hypothetical protein [Enterococcus faecium C68] gi|261207449|ref|ZP_05922135.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289565860|ref|ZP_06446301.1| signal peptide peptidase sppA [Enterococcus faecium D344SRF] gi|293559811|ref|ZP_06676329.1| Putative signal peptide peptidase sppA [Enterococcus faecium E1162] gi|294623410|ref|ZP_06702266.1| putative protease [Enterococcus faecium U0317] gi|314939698|ref|ZP_07846922.1| signal peptide peptidase SppA [Enterococcus faecium TX0133a04] gi|314942226|ref|ZP_07849078.1| signal peptide peptidase SppA [Enterococcus faecium TX0133C] gi|314948859|ref|ZP_07852229.1| signal peptide peptidase SppA [Enterococcus faecium TX0082] gi|314950801|ref|ZP_07853873.1| signal peptide peptidase SppA [Enterococcus faecium TX0133A] gi|314992218|ref|ZP_07857658.1| signal peptide peptidase SppA [Enterococcus faecium TX0133B] gi|314995223|ref|ZP_07860336.1| signal peptide peptidase SppA [Enterococcus faecium TX0133a01] gi|257818553|gb|EEV45881.1| protease/peptidase [Enterococcus faecium 1,231,502] gi|257825687|gb|EEV52313.1| protease/peptidase [Enterococcus faecium 1,231,410] gi|257830719|gb|EEV57326.1| protease/peptidase [Enterococcus faecium 1,231,408] gi|260073897|gb|EEW62221.1| conserved hypothetical protein [Enterococcus faecium C68] gi|260078340|gb|EEW66045.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289162320|gb|EFD10179.1| signal peptide peptidase sppA [Enterococcus faecium D344SRF] gi|291597176|gb|EFF28371.1| putative protease [Enterococcus faecium U0317] gi|291606230|gb|EFF35646.1| Putative signal peptide peptidase sppA [Enterococcus faecium E1162] gi|313590553|gb|EFR69398.1| signal peptide peptidase SppA [Enterococcus faecium TX0133a01] gi|313593218|gb|EFR72063.1| signal peptide peptidase SppA [Enterococcus faecium TX0133B] gi|313597016|gb|EFR75861.1| signal peptide peptidase SppA [Enterococcus faecium TX0133A] gi|313598998|gb|EFR77843.1| signal peptide peptidase SppA [Enterococcus faecium TX0133C] gi|313641033|gb|EFS05613.1| signal peptide peptidase SppA [Enterococcus faecium TX0133a04] gi|313644732|gb|EFS09312.1| signal peptide peptidase SppA [Enterococcus faecium TX0082] Length = 341 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 63/255 (24%), Positives = 123/255 (48%), Gaps = 16/255 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSP 76 D++ + ++++ G I + +E+++ I D + + + ++SP Sbjct: 53 EEGDSTQKIVKLSVDGTIAAGGSSGLFASEGYNHKNFMEQLKAIEEDPTVKGIFLEVNSP 112 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG Y I + + ++ P+ + MAAS GY IS ++ I A E ++ GSIGV Sbjct: 113 GGGVYESAEIAKKLDTIRKEHDIPMYVSMKNMAASGGYYISAQADKIFATEETVTGSIGV 172 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + L+KLGV +VKS +K S + ++Q +DS+Y FV +VS Sbjct: 173 IMSGLNYSGLLEKLGVEDTTVKSGALKDMGSGTRPETKEEEAVLQAYIDSAYSRFVAIVS 232 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 E RN ++ ++DGRI+ G +AK+VGL+D +G E+ +++ + ++ +++ Sbjct: 233 EGRNKSEEEVKKIADGRIYDGVQAKEVGLVDELGFPEDALKAIRKEQQLEDA-ELVEYSS 291 Query: 255 PKNYWFCDLKNLSIS 269 + + ++ Sbjct: 292 TPSGFASTWLGSKLA 306 >gi|257878473|ref|ZP_05658126.1| protease/peptidase [Enterococcus faecium 1,230,933] gi|257812701|gb|EEV41459.1| protease/peptidase [Enterococcus faecium 1,230,933] Length = 341 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 63/255 (24%), Positives = 123/255 (48%), Gaps = 16/255 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSP 76 D++ + ++++ G I + +E+++ I D + + + ++SP Sbjct: 53 EKGDSTQKIVKLSVDGTIAAGGSSGLFASEGYNHKNFMEQLKAIEEDPTVKGIFLEVNSP 112 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG Y I + + ++ P+ + MAAS GY IS ++ I A E ++ GSIGV Sbjct: 113 GGGVYESAEIAKKLDTIRKEHDIPMYVSMKNMAASGGYYISAQADKIFATEETVTGSIGV 172 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + L+KLGV +VKS +K S + ++Q +DS+Y FV +VS Sbjct: 173 IMSGLNYSGLLEKLGVEDTTVKSGALKDMGSGTRPETKEEEAVLQAYIDSAYSRFVAIVS 232 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 E RN ++ ++DGRI+ G +AK+VGL+D +G E+ +++ + ++ +++ Sbjct: 233 EGRNKSEEEVKKIADGRIYDGVQAKEVGLVDELGFPEDALKAIRKEQQLEDA-ELVEYSS 291 Query: 255 PKNYWFCDLKNLSIS 269 + + ++ Sbjct: 292 TPSGFASTWLGSKLA 306 >gi|125973935|ref|YP_001037845.1| signal peptide peptidase SppA, 36K type [Clostridium thermocellum ATCC 27405] gi|256005058|ref|ZP_05430029.1| signal peptide peptidase SppA, 36K type [Clostridium thermocellum DSM 2360] gi|125714160|gb|ABN52652.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Clostridium thermocellum ATCC 27405] gi|255991026|gb|EEU01137.1| signal peptide peptidase SppA, 36K type [Clostridium thermocellum DSM 2360] gi|316939864|gb|ADU73898.1| signal peptide peptidase SppA, 36K type [Clostridium thermocellum DSM 1313] Length = 326 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 68/280 (24%), Positives = 128/280 (45%), Gaps = 15/280 (5%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATAL 69 + S S +P++ +++ G I DS +E ++ IE + S + Sbjct: 37 LNLSDSESSLPLTPYIGVVSVEGTIMDSNSTTSFLSNGYNHKETLKLIEDMKNSASNKGI 96 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETS 127 ++ ++SPGG Y + ++ +++ K +PV T + A S GY IS AS+ + + + Sbjct: 97 LLYVNSPGGGVYESDELYLKLKEYKEETGRPVWTYMSNQACSGGYYISMASDKVFSNRNA 156 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 GSIGV+ +K D LG+ + S KA + E+ + ++Q +VD +Y Sbjct: 157 WTGSIGVIISLTNLKGLYDNLGIKGIYITSGRNKAMGAADLELTDEQRDILQSLVDEAYE 216 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 FV +V+E R + ++ ++DGRI + +A ++ LID + +EV ++ A + I Sbjct: 217 QFVEIVAEGRKMTVEEVKRIADGRILSAKQALELNLIDEIATYDEVKEAFSAELGNVKIY 276 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 K +P N + I + + K G+ Sbjct: 277 TPKKKDPFGLSSLFSYINSLKPRSDTEIIAELIKAKGNGV 316 >gi|212635276|ref|YP_002311801.1| peptidase S49, SppA 67 kDa type:peptidase S49, SppA [Shewanella piezotolerans WP3] gi|212556760|gb|ACJ29214.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Shewanella piezotolerans WP3] Length = 613 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 115/247 (46%), Gaps = 13/247 (5%) Query: 34 NSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 V I +G+I + E + + DDS A+++ + SPGGSA+A E Sbjct: 323 ADNKVGIIVAKGKILNGSQPAGEIGGESTSELLRKARFDDSIKAVVLRVDSPGGSAFASE 382 Query: 85 AIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I + + +K KP++ + AAS GY IS +++ I A T+L GSIG+ + Sbjct: 383 QIRQEVLALKAANKPIVVSMGSYAASGGYWISASADYIYATPTTLTGSIGIFGMVTTFED 442 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L +GV V +S S ++P+ ++Q ++ Y F+ LV+ R++ ++ Sbjct: 443 SLASIGVHTDGVATSDWAG-FSVTKGISPQISAVIQRHIERGYKDFISLVATERDMTLEQ 501 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPKNYWFC 261 ++ GR+WTG +A ++GL+D +G + L I+ P++ + Sbjct: 502 VDNIAQGRVWTGRKALELGLVDGIGDLQNAVTHAAELAKIDHFDTEVIQQELSPQDQFIQ 561 Query: 262 DLKNLSI 268 ++ + Sbjct: 562 EMFASAA 568 Score = 81.6 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 88/277 (31%), Gaps = 36/277 (12%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51 +K+ + L+ +V S ++ + + G I D + Sbjct: 23 RKLFLNLIFFGLIIALIVTLSSEETLKVEDGSALVLNLSGTIVDQKRRVDPLEAAMKSGS 82 Query: 52 -----------ELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRKPV 99 ++I+ + S D + L++ L G+ ++I A+ K Sbjct: 83 AKDGSGEILLSDVIDVVNNASSDARISQLVLDLGHLRGTGMSKLQSIGDALNNFKETGKP 142 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 I Y ++ ++ I V G+ Y K LDKL + + Sbjct: 143 IVAHANWFGQNQYFLASFADRIYLNPQGSVEIEGLGRYRQYFKSALDKLKIKAHVFRVGT 202 Query: 160 MKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--------PYDKTLVLSD 209 K+ PF +++ A + +++ + + V ++R+I + L Sbjct: 203 FKSAVEPFIRDDMSDAAKEANLALLNDLWESYSTTVGQNRDIAASQLSLSAKEYLAELDK 262 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + A + +D + EE S+ + Sbjct: 263 ADGQSSQMALNLKWVDELKTAEEFRLSMVDAVGKSAD 299 >gi|258544038|ref|ZP_05704272.1| 36K family signal peptide peptidase SppA [Cardiobacterium hominis ATCC 15826] gi|258520666|gb|EEV89525.1| 36K family signal peptide peptidase SppA [Cardiobacterium hominis ATCC 15826] Length = 319 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 62/289 (21%), Positives = 130/289 (44%), Gaps = 25/289 (8%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP-----------HVARIAIRGQIEDS-- 50 + +K + + L + S H+A ++++G I Sbjct: 20 MRRKRRWKIFFRIFWALYWLLLLSFLFGLKGSDPKSEGASYRGKHLAVVSVQGMIASDME 79 Query: 51 ---QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK---PVITEVH 104 ++I +E+ ++ A A+I+ ++S GGS A++RA++++K+ + PV + Sbjct: 80 ANADDIISGLEKAFKNPMAEAVILDINSGGGSPVQSGAVYRAVKRLKSERSDLPVYAVIA 139 Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 ++ AS Y I+ +++ I A S+VGSIGV+ + L KLG+ + + K Sbjct: 140 DVGASGAYYIAASADEIYADPASIVGSIGVISYGLGYRDLLGKLGLDARVFTAGEHKNFL 199 Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLI 224 + ++P V MQ ++D+ + F++ V + R +T + G WTG +A+ +GLI Sbjct: 200 AGDKPLDPNEVAHMQALLDNMHAQFIKAVRDGRGERLKETPEMFSGLFWTGEQAQPLGLI 259 Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273 D +G + + + Y ++ P + L+++ + + Sbjct: 260 DALGDKNTLRNAKYK------DLDFVEYKPDRTPLEKLLRDMGTEASVG 302 >gi|116328102|ref|YP_797822.1| periplasmic serine protease (ClpP class) [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331445|ref|YP_801163.1| periplasmic serine protease (ClpP class) [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120846|gb|ABJ78889.1| Periplasmic serine protease (ClpP class) [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125134|gb|ABJ76405.1| Periplasmic serine protease (ClpP class) [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 330 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 77/287 (26%), Positives = 134/287 (46%), Gaps = 29/287 (10%) Query: 31 VEDNSPHVARIAIRGQIEDS----------QELI----ERIERISRDDSATALIVSLSSP 76 N + I I G I D ++ +++E D A+I+ ++SP Sbjct: 45 SGKNEDKILIIPIDGVISDEGEKTFFGGQEDSILAGVKKQLELAELDPEIKAVILKINSP 104 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GGS A + +++ I + K +K PV++ + AAS Y IS A+++I+A TS+ GSIGV Sbjct: 105 GGSVTASDILYKEILQFKAKKKIPVVSLFMDTAASGAYYISMATDLIIAHPTSVTGSIGV 164 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + VK LDKLGV +S++S K SP +++P+ +++Q +VD + F +V Sbjct: 165 ILSGINVKEGLDKLGVKDQSIRSGGNKTIGSPLEDLSPEQRKLLQSIVDDLFEKFFEVVK 224 Query: 195 ESR-NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-----IRK 248 R + ++DGRI+T ++A GLID +G + Q AL + + Sbjct: 225 NGRPGKNPAELRKIADGRIFTASQALGHGLIDKIGYFDNAVQETMALPNYRKTPGSNSPR 284 Query: 249 IKDWN----PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 I ++ N++ L S + + + Q + +W Sbjct: 285 IIYYSQSTDKRANFYQVQSPELRQDSTISKILGIRSQVR---FLYIW 328 >gi|55377494|ref|YP_135344.1| signal peptide peptidase SppA [Haloarcula marismortui ATCC 43049] gi|55230219|gb|AAV45638.1| putative signal peptide peptidase SppA [Haloarcula marismortui ATCC 43049] Length = 331 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 20/266 (7%) Query: 37 HVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +VA +A+ G I + +++E+IER D + AL++ L++PGG Sbjct: 67 NVAEVAVEGPISRDGGGGITSPPVGASADDIVEQIERADSDRGSEALLLKLNTPGGEIVP 126 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I I + P I ++ AS GY I+ + + A E S+VGSIGV+ K Sbjct: 127 SEDIR--IAAEQFDGPTIAYATDVCASGGYDIAAGCDELWAREGSIVGSIGVVGSRVNAK 184 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 D++G+S + + K P E+ + +Q +VD Y F+ V+E R + + Sbjct: 185 ELADRVGLSYEQFTAGEYKDAGVPLKEMTADEREYLQSIVDDYYDQFIDTVAEGREMDAE 244 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + RI+ G EA++ GL+D +G +++V SL IK++ P + Sbjct: 245 ALKDT-EARIFLGDEAEERGLVDRLGTRDDVEASLEQRLG--EDVTIKEYEPERGLTGKL 301 Query: 263 LKN-LSISSLLEDTIPLMKQTKVQGL 287 ++ L I + ++GL Sbjct: 302 RGGAQQVAFALGAGIAGVADGDIEGL 327 >gi|14591350|ref|NP_143428.1| protease IV [Pyrococcus horikoshii OT3] gi|3257998|dbj|BAA30681.1| 334aa long hypothetical protease IV [Pyrococcus horikoshii OT3] Length = 334 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 64/240 (26%), Positives = 117/240 (48%), Gaps = 3/240 (1%) Query: 21 TVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGG 78 + F S +V + VA + I G I+D +IE I RI +D+ ++V + SPGG Sbjct: 73 FLKGFIASRNVTYTNVTVAILPIFGPIDDESALNVIEVIRRIRENDTIKGVLVWIESPGG 132 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 I+ ++K+ KPVI V A S GY I+CA+ IVA + VGSIGV++ + Sbjct: 133 FVGPVREIYIELKKLDYIKPVIAYVSGYAYSGGYYIACAAKEIVANPLADVGSIGVIYVH 192 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + + + G+ ++ K+ P K + + ++ P+ +++Q + + ++ F+++VSE RN Sbjct: 193 FNAEKYYEMNGIEVEVFKTGPYKDMGADWRKLTPEERKIVQTQIQTYFNDFLQVVSEGRN 252 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + + + GR W + L+D +G + + L L + I + Sbjct: 253 MTVEDVKKFATGRTWFAKD-VNGTLVDKLGDLDLALKELLKLIGAKKANVIVYDVNRGKF 311 >gi|161503605|ref|YP_001570717.1| protease 4 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864952|gb|ABX21575.1| hypothetical protein SARI_01684 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 618 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 74/268 (27%), Positives = 122/268 (45%), Gaps = 14/268 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D +A I G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + VK KPV+ + MAAS GY IS +N IVA+ ++L GSIG+ Sbjct: 379 VNASEVIRAELAAVKAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ L +GV V +SP+ S ++P+ QMMQ ++ Y F+ LV+E+R Sbjct: 439 NTVENSLSSIGVHSDGVSTSPLAE-ISMTKALSPEVQQMMQLSIEYGYKRFITLVAEARK 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ A + + Sbjct: 498 RTPEQIDKIAQGHVWTGQDAKANGLVDKLGDFDDAVAK-AAALAKLKQWHLDYYQNEPTV 556 Query: 259 WFCDLKNLSIS--SLLEDTIPLMKQTKV 284 + +++ S ++L + I M + Sbjct: 557 LDMIMDSMTGSVRAMLPEAIQAMLPAPL 584 Score = 98.9 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S+ E + + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90 +++ I + D + T +++ L + G+ I +A+ Sbjct: 79 ALGRQLFGASSNRLQENSLFDIVNTIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + + G Y K LDKL V Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQINLHGFATNGLYYKTLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ VS +R I + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVSTNRQISPQQLFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + DG T A L+D + +V ++L Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300 >gi|294054568|ref|YP_003548226.1| signal peptide peptidase SppA, 67K type [Coraliomargarita akajimensis DSM 45221] gi|293613901|gb|ADE54056.1| signal peptide peptidase SppA, 67K type [Coraliomargarita akajimensis DSM 45221] Length = 603 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 10/246 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGG 78 S + +A + G+I D L + + R+ D A+++ ++SPGG Sbjct: 308 SKLTIKSGERIAVVYAEGEIIDGGKQYGSVAGDWLAQELRRLRNDSEVKAVVLRVNSPGG 367 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 SA A E I R +++ KP+I + AAS GY IS ++ IVA ++ GSIGV Sbjct: 368 SAVASEIIQRETRRLAAEKPLIVSMGSYAASGGYWISAYADSIVAQPYTITGSIGVFGLV 427 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 ++ KL + VK++P S + + ++Q D Y FV V++ R Sbjct: 428 FNIQEAAAKLAIQFDGVKTAPFADIHSLSRPRTEEEMALIQQFTDEIYTAFVDRVADGRA 487 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + K L++GR+W+G A+++ L+D +GG ++ + L I+ P ++ Sbjct: 488 LETSKVRELAEGRVWSGLRAQQLALVDHIGGLKQAIANAQDLAQL-DTESIEQIPSPSSF 546 Query: 259 WFCDLK 264 + Sbjct: 547 AESLAR 552 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 46/311 (14%), Positives = 111/311 (35%), Gaps = 39/311 (12%) Query: 10 TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------------ 51 + L ++ S VE V + + I+D+ Sbjct: 21 WGIIALFVLMGIFASLSEKPAVEVQDGSVLVLNLNTTIQDAPPSSSFEQAVQESLGGRPQ 80 Query: 52 ------ELIERIERISRDDSATALIVSLSSP---GGS-AYAGEAIFRAIQKVKNRKPVIT 101 ++I IE + DDS AL++ + GS I ++++ + + Sbjct: 81 SATYLLKVINTIEHAAGDDSIAALLLHGNLQQEGYGSGLALVSEIRQSLEAFQASGKQVH 140 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + Y ++ +N I L+ G+ P++ L+K G+ +++ + K Sbjct: 141 AYLVNPSQKDYYLASIANEIWINPFGLISLQGLASNAPFLGDTLEKYGIGVQTTRVGTYK 200 Query: 162 AEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS-DGRIWTGAEA 218 + F + ++ + ++ + + S +R + ++ LS +T +A Sbjct: 201 SAVELFTRNRMSEADREQKTALLSDLWTSLLVETSRARELSVEQLETLSAQQAFFTAEKA 260 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278 + LID VG +E+ L + + ++ D ++ + + LE + + Sbjct: 261 QSAHLIDRVGYLDELIDDLA--------TRYQASAKKHSFRQIDFEDYANAMALESKLTI 312 Query: 279 MKQTKVQGLWA 289 ++ ++A Sbjct: 313 KSGERIAVVYA 323 >gi|327399485|ref|YP_004340354.1| signal peptide peptidase SppA, 36K type [Hippea maritima DSM 10411] gi|327182114|gb|AEA34295.1| signal peptide peptidase SppA, 36K type [Hippea maritima DSM 10411] Length = 278 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 80/287 (27%), Positives = 147/287 (51%), Gaps = 12/287 (4%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERIS 61 ++KK V+L+++ V ++ +V P+VA ++I G I + I + +I Sbjct: 1 MIKKATLAVVLLTIIVFIVSMVYFAFNV----PNVAVLSINGVINQKKTDNWIRALNKIK 56 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 R+ + A+++ + SPGG A + + ++ AI+ + KPV+ + + AS Y + ASN I Sbjct: 57 RESNIKAVLLKIDSPGGEAVSSQRLYFAIKDLSKTKPVVCLIETIGASGAYYAASASNKI 116 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 V+ S++GSIGVLF+ V +LGV VKS +K +PF E + +M+ +V Sbjct: 117 VSYPASIIGSIGVLFETLNVAKLSKRLGVKAFVVKSGKLKDAGNPFREPTKEDEEMINNV 176 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 V+ Y+ F+ V+ RN+ K ++G I++G A K+GL+D GG ++ + + L Sbjct: 177 VNDIYNQFLDDVARGRNMESQKLKRYANGSIFSGRLALKIGLVDSTGGLKDAKKYIKRLT 236 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + I+ P + L E+ I L+++ V+ ++ Sbjct: 237 KIKKIKLYSFNRKP------STAGKLLKGLAENIIELLERPSVKAIY 277 >gi|28199904|ref|NP_780218.1| protease IV [Xylella fastidiosa Temecula1] gi|182682655|ref|YP_001830815.1| signal peptide peptidase SppA, 67K type [Xylella fastidiosa M23] gi|28058025|gb|AAO29867.1| protease IV [Xylella fastidiosa Temecula1] gi|182632765|gb|ACB93541.1| signal peptide peptidase SppA, 67K type [Xylella fastidiosa M23] gi|307578935|gb|ADN62904.1| signal peptide peptidase SppA, 67K type [Xylella fastidiosa subsp. fastidiosa GB514] Length = 633 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 125/267 (46%), Gaps = 11/267 (4%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVS 72 + S + S +A + G+I + + ++ +D+ A+++ Sbjct: 320 LSLLDAQSALLGTSSQIAVVVAAGEIKGGDQPAGYIGGESTSMLLRKVRDEDAVKAVVLR 379 Query: 73 LSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 ++SPGG +A E I R + ++ KPV+ + +MAAS GY IS ++ I A +++ GS Sbjct: 380 VNSPGGEVFASEQIRREVVALRKVGKPVVVSMGDMAASGGYWISMDADRIYADPSTISGS 439 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IG+ P + LDK+GV V ++ ++P+ Q+ Q+V+D Y F Sbjct: 440 IGIFGLVPNITRTLDKVGVHTDGVGTTRFAGALDITRALDPQVGQIFQNVIDKGYADFTT 499 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIK 250 V+++R+ + ++ GR+W+GA+AK+ GL+D +GG E + ++ Sbjct: 500 KVAQARHRSVKEIDSIARGRVWSGAQAKERGLVDELGGVREAITDAAKRAKLGEGHYSVR 559 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIP 277 + + + + N+ + + + Sbjct: 560 YVDKAVSPFMQFIINMMSTRIGNWALG 586 Score = 66.2 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 41/251 (16%), Positives = 89/251 (35%), Gaps = 16/251 (6%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAAS 109 ++LI IE ++D +++ L S YA + A+Q +K+ + E Sbjct: 99 RDLIRVIEAAAKDKKIERVLLDLDKLQPSGYASLREVVAALQNLKDSGKQLVAFSESMTQ 158 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPF- 167 + YL++ ++ I V G+ Y + L +KLGV + + K+ PF Sbjct: 159 SQYLLAAQADEIYLDPMGSVLLEGLAHYRQYFRKGLQEKLGVDVHLFRVGEYKSAAEPFV 218 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW--------TGAEA 218 + A + ++ + ++ ++++R + + + A Sbjct: 219 LDAASADAKEADLFWMNDIWQRYLADIAKARKLDSAHLNTIVERLPQDIAANHGDLAKYA 278 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIR----KIKDWNPPKNYWFCDLKNLSISSLLED 274 L+D + +E+V Q + GV + D+ + L SS + Sbjct: 279 LAQKLVDGLRTREQVNQLMIQRGVADKKADGGFRNVDFGTYLSLLDAQSALLGTSSQIAV 338 Query: 275 TIPLMKQTKVQ 285 + + Sbjct: 339 VVAAGEIKGGD 349 >gi|32034999|ref|ZP_00135077.1| COG0616: Periplasmic serine proteases (ClpP class) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208734|ref|YP_001053959.1| protease 4 [Actinobacillus pleuropneumoniae L20] gi|126097526|gb|ABN74354.1| protease 4 [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 618 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 66/253 (26%), Positives = 124/253 (49%), Gaps = 12/253 (4%) Query: 33 DNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 +A + + GQI S +++ + + DD+ +I+ ++SPGGSA A Sbjct: 321 QAEHKIAVVNVEGQIISGESDASSSGSDTIVKLLRKAREDDNVRGVILRVNSPGGSALAS 380 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + +++++ KPV+ + MAAS GY IS S+ I+A+ T++ GSIG+ + Sbjct: 381 EIIRQEVEEIQKAGKPVVASMGGMAASGGYWISATSDKIIASPTTITGSIGIFGLATSFE 440 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LGV+ + SP + SP + + +++Q +++ Y F+ LVS RN+ Sbjct: 441 KTAKNLGVTEDGISLSPFASS-SPLKTLQKEQAEVIQISIENGYDRFLELVSRGRNMSKQ 499 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFC 261 ++ G++W+G +A K GL+D +G + ++ L + + ++ W Sbjct: 500 AVDKIAQGQVWSGEDALKHGLVDELGDFTAAYSAVTELVNQRRKANNEAEIEHFRSQWMI 559 Query: 262 DLKNLSISSLLED 274 D + SLL+ Sbjct: 560 DSDDSLFGSLLKG 572 Score = 83.1 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 96/289 (33%), Gaps = 46/289 (15%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV----------ARIAIRGQIEDSQ-- 51 + + I+ + L + +V F++ + + S + + G + D+ Sbjct: 11 IFRCIREFVMSLFFIIFVLVCFAFLALINQESGSTKHTNFIEKGALTLNLDGYLADNHDK 70 Query: 52 -----------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIF 87 +++ I + ++D+ T L++ L+ G A I Sbjct: 71 YGDLHRLVQAELGNHEPIKISTFDVVRAIAKAAKDERITGLVLDLAYFQGGDSASLHFIG 130 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 I + K + V E + Y ++ ++ I + V + Y K LDK Sbjct: 131 NEINEFKKSGKPVIAVGEQYSQPQYYLASFADKIYLNKAGFVDIHALSHSNVYFKTLLDK 190 Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204 + + K+ PF +++ +A Q Q + S +H + ++++R IP ++ Sbjct: 191 IEAEPHIFRVGTYKSAVEPFIRDDMSAEAKQNAQTWLTSIWHNIRQDIAQNRKIPAEQVL 250 Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + A L+ + ++ +L Sbjct: 251 LDSQTYIEKYRQLKGDDAQYALSQQLVTDIATNVQIQTALVERFGKDKD 299 >gi|296328845|ref|ZP_06871356.1| S49 family protease IV [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153966|gb|EFG94773.1| S49 family protease IV [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 551 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 56/273 (20%), Positives = 121/273 (44%), Gaps = 13/273 (4%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70 ++ + +A I + G+I + ++E+++ + + L+ Sbjct: 267 FGEYVSAYKRKKNKSKNTIAIINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLV 326 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + ++SPGGSA E I++ ++K+ P+ + ++ AS GY I+ + A +L G Sbjct: 327 LRINSPGGSALESEKIYQKLKKL--DIPIYISMGDLCASGGYYIATVGKRLFANPVTLTG 384 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ YP ++KL V+++ S+++ ++ + + ++ Y F Sbjct: 385 SIGVVILYPEFTETINKLKVNMEGFSKGKGFDIFDVSSKLSEESKEKIIYSMNEVYSEFK 444 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 V E+RNI + ++ GR+W G++AK+ GL+D +G + SL + + Sbjct: 445 EHVMEARNISEEDLEKIAGGRVWLGSQAKENGLVDELGSLNDCINSLVKDLELKDFK--L 502 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 + + + + + D I ++ K Sbjct: 503 TYIRGRKSIMEVVSAMKPQFIKSDIIEKIEMLK 535 Score = 70.0 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 106/261 (40%), Gaps = 11/261 (4%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 F+L K+K + + SL + V F+ + VED ++ ++I + + +++ +E + Sbjct: 27 FILGKLKNKDKV-SLKGVKTVVFNLNELVEDYM--ISTVSINKTL-SHEAVLKALENLVN 82 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D +I+ + S E + +K+ K +I + + A+ I + Sbjct: 83 DKKIEKIIIDVDEVDLSRVHIEELKEIFEKLSVNKEIIAIGTTFDEYSYQVALLANKIYM 142 Query: 123 AA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQ 179 + S + G ++ PY K L LG+++ ++ K E +++ + + + Sbjct: 143 LNTKQSCLYFRGYEYKEPYFKNILANLGITVNTLHIGDYKVAGESFSNDKMSEEKKESLI 202 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG--AEAKKVGLIDVVGGQEEVWQSL 237 ++ ++ + F+ LV E R D T + G + +A ++GLID + EE+ Sbjct: 203 NIKETLFQNFINLVKEKRK--VDITNEIFSGDLIFANSEKAIQLGLIDGLSTYEEIGIDY 260 Query: 238 YALGVDQSIRKIKDWNPPKNY 258 VD Sbjct: 261 NEDTVDFGEYVSAYKRKKNKS 281 >gi|241762558|ref|ZP_04760633.1| signal peptide peptidase SppA, 67K type [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241372886|gb|EER62573.1| signal peptide peptidase SppA, 67K type [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 637 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 77/272 (28%), Positives = 128/272 (47%), Gaps = 11/272 (4%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSA 66 S +++ F S+ + + + G+I D + + I Sbjct: 297 SFKAVSLASFIGSNPPSSAGSAIGVVTVSGEIVDDETRSGQVSGSTISSLILDTLAKGDI 356 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAE 125 AL+V + SPGGS A E + AI K + PVI + +AAS GY IS ++ I A Sbjct: 357 KALVVRVDSPGGSVSAAEQMRSAILAAKAKGLPVIVSMGSVAASGGYWISTPADKIFADP 416 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 +++ GSIGV P + L K+G+S VK++P+ +P F P+ Q+MQ VD+ Sbjct: 417 STITGSIGVFSLIPTFQQTLHKIGLSADGVKTTPLSGQPDVFRGTTPEFDQLMQFGVDTI 476 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y F +V+ SR++P DK +++GR+W+G +AKK+GL+D G ++ Sbjct: 477 YDRFTSIVASSRHLPLDKVREIAEGRVWSGVDAKKIGLVDQYGSLQDAVTEAAKRAHLDP 536 Query: 246 I-RKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 ++ + ++ LKNL + I Sbjct: 537 SHTHMQFIDEEPSFVEMILKNLFQHQASDAKI 568 Score = 69.6 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 95/282 (33%), Gaps = 39/282 (13%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSH----------VEDNSPHVARIAIRG--------- 45 +K + +++ V ++ + I G Sbjct: 14 IKDVLALILLVLFFGAIFVGLCLTTKNGAISSRNLGAASAADGALLIDFSGNLVEKTEGT 73 Query: 46 ----QIEDS--------QELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQK 92 I+D+ +E++ +E+ +R+ A+++ GG A A+ A+ K Sbjct: 74 SFLDLIQDNNNQNEILLREVVYGLEQAARNPKIKAVVLDLSDFSGGGRAAISAVDNALDK 133 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 V+ + A Y I+ I V +GV Y K LDKLGV Sbjct: 134 VRAAGKPVLSFAGFYNDARYRIAAHGTEIWLPNLGEVALLGVGGNQLYYKGLLDKLGVET 193 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 K + K+ PF +E +P A Q + +S + ++ ++ +R + L+ Sbjct: 194 KIYRVGRFKSFVEPFTRTEQSPDAKAANQALANSLWQTTLQDIAHARPKAHVAEWALNPT 253 Query: 211 RIW-----TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 A+ G+ID +G + + +L Sbjct: 254 SFLKSGHSFAELAQSAGMIDHIGNAIDFGNRVASLVGKDKQP 295 >gi|281418096|ref|ZP_06249116.1| signal peptide peptidase SppA, 36K type [Clostridium thermocellum JW20] gi|281409498|gb|EFB39756.1| signal peptide peptidase SppA, 36K type [Clostridium thermocellum JW20] Length = 326 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 68/280 (24%), Positives = 128/280 (45%), Gaps = 15/280 (5%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATAL 69 + S S +P++ +++ G I DS +E ++ IE + S + Sbjct: 37 LNLSDSKSSLPLTPYIGVVSVEGTIMDSNSTTSFLSNGYNHKETLKLIEDMKNSASNKGI 96 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETS 127 ++ ++SPGG Y + ++ +++ K +PV T + A S GY IS AS+ + + + Sbjct: 97 LLYVNSPGGGVYESDELYLKLKEYKEETGRPVWTYMSNQACSGGYYISMASDKVFSNRNA 156 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 GSIGV+ +K D LG+ + S KA + E+ + ++Q +VD +Y Sbjct: 157 WTGSIGVIISLTNLKGLYDNLGIKGIYITSGRNKAMGAADLELTDEQRDILQSLVDEAYE 216 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 FV +V+E R + ++ ++DGRI + +A ++ LID + +EV ++ A + I Sbjct: 217 QFVEIVAEGRKMTVEEVKRIADGRILSAKQALELNLIDEIATYDEVKEAFSAELGNVKIY 276 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 K +P N + I + + K G+ Sbjct: 277 TPKKKDPFGLSSLFSYINSLKPRSDTEIIAELIKAKGNGV 316 >gi|94266274|ref|ZP_01289979.1| Peptidase S49, SppA [delta proteobacterium MLMS-1] gi|93453125|gb|EAT03596.1| Peptidase S49, SppA [delta proteobacterium MLMS-1] Length = 306 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 115/222 (51%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 I + +L+ ++ R D+ A+++ + SPGG+ A + +F +++V +KPV+ + + Sbjct: 61 ITSADQLLAQLAEFGRRDNIKAIVLRIDSPGGAVGASQELFAEVKRVNQQKPVVAAMGSV 120 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 AAS G + + IVA +L GSIGV+ ++ ++ +++G +++KS +K +P Sbjct: 121 AASGGLYAALGAERIVANPGTLTGSIGVIIKFANLEELFERIGYRSETIKSVDLKDSGAP 180 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 + P+ QM+Q++VD + F+ V+ R++ DGRI++G +A ++GL+D Sbjct: 181 DRPLAPEERQMLQEMVDDVHDQFIADVAADRDLSTTTVRAFGDGRIFSGNQALELGLVDQ 240 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 +G + LG R + PP+ + L Sbjct: 241 LGNFNDAAMLAAELGGLDPSRVPELIYPPRRDFSLLSLLLGS 282 >gi|241889101|ref|ZP_04776405.1| putative signal peptide peptidase SppA [Gemella haemolysans ATCC 10379] gi|241864350|gb|EER68728.1| putative signal peptide peptidase SppA [Gemella haemolysans ATCC 10379] Length = 325 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 55/228 (24%), Positives = 112/228 (49%), Gaps = 9/228 (3%) Query: 30 HVEDNSPHVARIAIRGQI-------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 D+S + +I+I G+I ++ +I+ + + A+++S++SPGG Y Sbjct: 59 KKGDSSEVIQKISIDGEINAEMTNTYSRGSVLNQIKEAKGNPNVKAILLSVNSPGGGVYE 118 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 ++ A++ + K V + + AAS GY +S + I + GS+GV+ Y + Sbjct: 119 TAELYNALK--NSGKDVYVSMKKTAASGGYYVSTPAKKIFVNTETTTGSLGVIMSYVSAQ 176 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 FL+ G+ ++++S KA ++ +++Q+ +Y FV+ ++E R++ D Sbjct: 177 KFLNDHGIKQETIRSGEQKAVGGLTEDLPESTRKILQEQNKEAYERFVKAIAEGRHLSED 236 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 + L+DGR +TG +A L D VG ++E+ + + I+ Sbjct: 237 EVKKLADGRTYTGTQAVANKLADKVGTEDELIDLIKEEKGLSNPTVIE 284 >gi|121602669|ref|YP_988704.1| S49 family peptidase [Bartonella bacilliformis KC583] gi|120614846|gb|ABM45447.1| peptidase, S49 family [Bartonella bacilliformis KC583] Length = 283 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 65/268 (24%), Positives = 116/268 (43%), Gaps = 19/268 (7%) Query: 37 HVARIAIRGQIEDSQELIER----------IERISRDDSATALIVSLSSPGGSAYAGEAI 86 ++ + + G I DS L+ R +++ D A A+ + ++SPGGS I Sbjct: 19 NIPVVRLHGAIMDSTSLMARTLSLSRCADLLDKAFSDKRAPAVALVINSPGGSPVQSRLI 78 Query: 87 FRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 F+ I+ + + +K V+ V ++AAS GY+I+CA + I A TS+VGSIGV+ Sbjct: 79 FQRIRDLADEKKKQVLVFVEDVAASGGYMIACAGDEIFADATSIVGSIGVVSASFGFPEL 138 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K+GV + + K PF + ++ + + F+ LV E R Sbjct: 139 LKKIGVERRIYTAGKNKVILDPFQPEKKTGIDHLKSLQLEVHQTFIDLVKERRESKLSDD 198 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 + G WTG +GLID +G V + + K++ +P K+ Sbjct: 199 PDIFTGMFWTGKRGIGLGLIDGLGDVRSVVKERFG-----DKTKLRLISPSKSLLGPKTP 253 Query: 265 NLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + + ++ + + + A+W Sbjct: 254 SGISADVVNMAVDSLLTVAEER--ALWQ 279 >gi|295399533|ref|ZP_06809515.1| signal peptide peptidase SppA, 36K type [Geobacillus thermoglucosidasius C56-YS93] gi|294978999|gb|EFG54595.1| signal peptide peptidase SppA, 36K type [Geobacillus thermoglucosidasius C56-YS93] Length = 336 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 70/277 (25%), Positives = 132/277 (47%), Gaps = 25/277 (9%) Query: 37 HVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYA 82 + + + G I+D+ + + IE+ DD+ A+I+ + SPGG Sbjct: 61 KIVVLEVNGVIQDAGDTEALFTASGYDHRAFLRMIEQAKNDDTVKAIILRVDSPGGGVVE 120 Query: 83 GEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 I + K+K P+ + MAAS GY IS A++ I A+ +L GS+GV+ Q Sbjct: 121 SAEIHDQLLKLKKETKKPIYVSMGTMAASGGYYISTAADKIFASPETLTGSLGVIIQSFN 180 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + K GV + ++KS P K +P ++ + +++Q ++ +SY FV+++SE R++P Sbjct: 181 YEGLAKKYGVELVTIKSGPYKDIMNPARKMTEEEKEILQRLIHNSYEGFVKVISEGRHLP 240 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 + ++DGRI+ G +AK++ LID G E+ ++ + +K ++ F Sbjct: 241 ESEVRKIADGRIYDGRQAKQLKLIDEFGYLEDTIAAIKKDYDLADAQVVKY---TNDFSF 297 Query: 261 CDLKNLSISSLLE------DTIPLMKQTKVQGLWAVW 291 L + +S ++ + I L L ++ Sbjct: 298 GSLFKMELSRMIAPKHEATELIKLFSNPSSPRLMYLY 334 >gi|91793256|ref|YP_562907.1| signal peptide peptidase SppA, 67K type [Shewanella denitrificans OS217] gi|91715258|gb|ABE55184.1| signal peptide peptidase SppA, 67K type [Shewanella denitrificans OS217] Length = 613 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 14/268 (5%) Query: 35 SPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 V I +G I + E + ++ DD AL++ + SPGGSA+A E Sbjct: 324 KDAVGIIVAKGNILNGHQQAGDIGGESTSELLRKVRFDDKIKALVLRVDSPGGSAFASEQ 383 Query: 86 IFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I + + ++ KPV+ + MAAS GY IS +++ I A T+L GSIG+ + + Sbjct: 384 IRQEVLAIQAAGKPVVVSMGSMAASGGYWISASADYIYATPTTLTGSIGIFGMFATFEEA 443 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L ++G++ V +S +N ++Q ++ YH F+ LV+ RN+ ++ Sbjct: 444 LAQIGINSDGVATSDWAGLSVA-RPLNSNVEAVIQRHIERGYHEFISLVATERNMTLEQV 502 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFCDL 263 ++ GR+WTG +A ++GL+D +G + L + K+ + F Sbjct: 503 DAIAQGRVWTGKKALELGLVDEIGDMDIAVAKAAELAKMSTFDTKLIEQELTPEQLFVQQ 562 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWAVW 291 ++ L ++ K + ++ L A W Sbjct: 563 VFSVTAAYLPQSLQ--KTSVMETLLAQW 588 Score = 84.7 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 43/317 (13%), Positives = 93/317 (29%), Gaps = 36/317 (11%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR--- 62 +K+ + SL+ L V + + + G I D + +E +E Sbjct: 23 RKLILNLIFFSLLALIAVALLSEEAIVIEPDSALVLNLSGAIVDQKHFVEPLEAALNKGD 82 Query: 63 ----------------------DDSATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPV 99 D +++ L++ S AI A+ + K Sbjct: 83 EDNPNTEILLADILYVIHNATQDKRIKTIVLDLANLHSASVSKMTAIGDALNEFKATGKT 142 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 + Y ++ ++ I +V G+ Y K L+KL ++ + Sbjct: 143 VVAHGNYFNQNQYFLASYASKIYLNNQGMVSLDGLSRYRLYYKSALEKLKINTHVFRVGT 202 Query: 160 MKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSD 209 K+ PF +++ ++ + + +VS++R I D L Sbjct: 203 FKSAVEPFIRDDMSEADKASSNALLSDIWSSYSHIVSQNRGISPDALVLSPERYLSELDT 262 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 + A + +D + E+ ++ A + +Y Sbjct: 263 NEGDSAKMALTMKWVDELVSAEDFRLAMIASIGAAKDAQHFRQVKFADYLSLVKPLTRFI 322 Query: 270 SLLEDTIPLMKQTKVQG 286 I + K + G Sbjct: 323 EKDAVGIIVAKGNILNG 339 >gi|293390212|ref|ZP_06634546.1| signal peptide peptidase SppA, 67K type [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950746|gb|EFE00865.1| signal peptide peptidase SppA, 67K type [Aggregatibacter actinomycetemcomitans D7S-1] Length = 626 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 63/256 (24%), Positives = 118/256 (46%), Gaps = 13/256 (5%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSL 73 + D +A + + G I D + + + + D A+++ + Sbjct: 313 LASLPDRMSGDTKNKIAVVNVEGAIIDGETDEENVGGDTIANLLRKAYDDKDVKAVVLRV 372 Query: 74 SSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 +SPGGSA+A E I + + ++ KPV+ + MAAS GY IS ++ IVA + ++ GSI Sbjct: 373 NSPGGSAFASEIIRQELSHLQQAGKPVVVSMGGMAASGGYWISSTADYIVADKNTITGSI 432 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 G+ P + + K+GVS VK+S + S FS ++ + ++Q ++ Y F+ Sbjct: 433 GIFAVLPTFEKTIKKIGVSADGVKTSDLALG-SAFSPLSSELNDVLQLEIEHGYDEFLTK 491 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG--VDQSIRKIK 250 VS+ R++ + ++ G++W G+EA + L+D +G L KI+ Sbjct: 492 VSQGRHLSKAQVDKIAQGQVWLGSEAIEHKLLDELGDLNTALGKAMELVNEKLDENSKIQ 551 Query: 251 DWNPPKNYWFCDLKNL 266 + + D + Sbjct: 552 EEGFSVEWLDDDSGSF 567 Score = 70.8 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 34/249 (13%), Positives = 88/249 (35%), Gaps = 16/249 (6%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA-IQKVKNRKPVITEVHEMAASA 110 +++ I+ + DD L++ L+ G A I+ K + + A Sbjct: 96 DVVYAIDSAALDDKVRGLVLDLNYFQGGDLPSLEFVGASIENFKKNGKQVIAYSDNYNRA 155 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168 Y ++ ++ + V G++ + Y K LD L V+ + K+ PF + Sbjct: 156 QYFLASYADEVYMNPVGTVSIDGLVQENLYYKDLLDSLEVNPHVFRVGTYKSAVEPFLRN 215 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-----------KTLVLS-DGRIWTGA 216 +++ +A ++ + ++ + + V+E+RNI + + L D + Sbjct: 216 DMSDEAKTNLRRWLGIMWNNYKQRVAENRNIKEEAVAPNAHTYLTELKALQGDMTAYVKQ 275 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 G++D ++ +L+ D+ + + + + + + Sbjct: 276 RKLINGVLDRF-NLDKKLTALFGENEDKQPKMVDYDTYLASLPDRMSGDTKNKIAVVNVE 334 Query: 277 PLMKQTKVQ 285 + + Sbjct: 335 GAIIDGETD 343 >gi|325981472|ref|YP_004293874.1| peptidase S49 [Nitrosomonas sp. AL212] gi|325530991|gb|ADZ25712.1| peptidase S49 [Nitrosomonas sp. AL212] Length = 314 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 58/250 (23%), Positives = 110/250 (44%), Gaps = 8/250 (3%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIERISRDDSATALIVSLSSPGG 78 + V H A I +RG I + ++ + +D + +I+ ++SPGG Sbjct: 54 GWIDDGKVRLTDKHTALIDLRGTITADSMNSADKINSSLRSAFQDKNTKGVILRINSPGG 113 Query: 79 SAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 S I I++++ + P I V ++ AS GY I+ A++ I + SL+GSIGVL Sbjct: 114 SPVQAGYINDEIRRLRAKYPDIPLYAIVGDICASGGYYIAVAADKIYVDKASLIGSIGVL 173 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 L+KLG+ + + + K+ PFS ++P + ++ + F+++V + Sbjct: 174 MDSFGFTGTLEKLGIERRLLTAGENKSFLDPFSPLDPVQIDHATKLLREVHEQFIQVVKQ 233 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 R + G IWTG ++ +GL D +G E V + + + + Sbjct: 234 GRGERLKNDPDIFSGIIWTGQKSIDLGLTDAIGNAEYVAREIIKAETLTDFTPREGLSDV 293 Query: 256 KNYWFCDLKN 265 + F + + Sbjct: 294 FSKRFSQIIS 303 >gi|19704208|ref|NP_603770.1| protease IV [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714432|gb|AAL95069.1| Protease IV [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 494 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 53/237 (22%), Positives = 111/237 (46%), Gaps = 11/237 (4%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70 ++ + +A I + G+I + ++E+++ + + L+ Sbjct: 210 FGEYVSAYKRKKNKSKNTIAIINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLV 269 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + ++SPGGSA E I++ ++K+ P+ + ++ AS GY I+ + A +L G Sbjct: 270 LRINSPGGSALESEKIYQKLKKL--DIPIYISMGDLCASGGYYIATVGKRLFANPVTLTG 327 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ YP ++KL V+++ S+++ ++ + + ++ Y F Sbjct: 328 SIGVVILYPEFTETINKLKVNMEGFSKGKGFDIFDVSSKLSEESKEKIIYSMNEVYSEFK 387 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 V E+RNI + ++ GR+W G++AK+ GL+D +G + SL + + Sbjct: 388 EHVMEARNISEEDLEKIAGGRVWLGSQAKENGLVDELGSLNDCINSLVKDLELKDFK 444 Score = 68.1 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 88/226 (38%), Gaps = 8/226 (3%) Query: 38 VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 ++ ++I + + +++ +E + D +I+ + S E + +K+ K Sbjct: 2 ISTVSINKTL-SHEAVLKALENLVNDKKIEKIIIDVDEVDLSRVHIEELKEIFEKLSVNK 60 Query: 98 PVITEVHEMAASAGYLISCASNIIVAA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 +I + + A+ I + + S + G ++ PY K L LG+++ ++ Sbjct: 61 EIIAIGTTFDEYSYQVALLANKIYMLNTKQSCLYFRGYEYKEPYFKNILANLGITVNTLH 120 Query: 157 SSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 K E +++ + + + ++ ++ + F+ LV E R D T + G + Sbjct: 121 IGDYKVAGESFSNDKMSEEKKESLINIKETLFQNFINLVKEKRK--VDITNEIFSGDLIF 178 Query: 215 G--AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 +A ++GLID + EE+ VD Sbjct: 179 ANSEKAIQLGLIDGLSTYEEIGIDYNEDTVDFGEYVSAYKRKKNKS 224 >gi|34762510|ref|ZP_00143508.1| Putative signal peptide peptidase sppA [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887843|gb|EAA24913.1| Putative signal peptide peptidase sppA [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 502 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 111/237 (46%), Gaps = 11/237 (4%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70 ++ + +A I + G+I + ++E+++ + + L+ Sbjct: 218 FLEYVSAYKRKKNKSKNTIAIINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLV 277 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + ++SPGGSA E I++ ++K+ P+ + ++ AS GY I+ + A +L G Sbjct: 278 LRINSPGGSALESEKIYQKLKKL--EIPIYISMGDLCASGGYYIATIGKKLFANPVTLTG 335 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ YP ++KL V+++ FS+++ ++ + + ++ Y F Sbjct: 336 SIGVVILYPEFTETINKLKVNMEGFSKGKGFDIFDVFSKLSEESKEKIIYSMNEVYSEFK 395 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 V E+RNI + ++ GR+W G++AK GL+D +G + SL + + Sbjct: 396 EHVMEARNISEEDLEKIAGGRVWLGSQAKANGLVDELGSLNDCIDSLAKDLELKDFK 452 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 97/251 (38%), Gaps = 13/251 (5%) Query: 38 VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 ++ I+I + + L++ +E + D +I+ + S E I +K+ K Sbjct: 10 ISTISINKTL-SHETLLKALENLVNDKKIEKIIIDVDEVDLSRVHIEEIKEIFEKLSVNK 68 Query: 98 PVITEVHEMAASAGYLISCASNIIVAA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 +I + + A+ I + + S + G ++ PY K L LGV++ ++ Sbjct: 69 EIIAIGTIFDEYSYQVALLANKIYMLNTKQSCLYFRGYEYKEPYFKNILATLGVTVNTLH 128 Query: 157 SSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 K E +++ + + + ++ ++ + F+ L+ E R D T + G + Sbjct: 129 IGDYKVAGESFSNDKMSEEKKESLINIKETLFQNFINLIKEKRK--VDITNEILSGDLIF 186 Query: 215 G--AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 +A ++GLID + EE + ++ ++ KN L Sbjct: 187 ANSEKAIQLGLIDGLSTYEE-----IGIDYNEDTVDFLEYVSAYKRKKNKSKNTIAIINL 241 Query: 273 EDTIPLMKQTK 283 E I + + Sbjct: 242 EGEIDTRESKE 252 >gi|257458110|ref|ZP_05623264.1| signal peptide peptidase SppA, 67K type [Treponema vincentii ATCC 35580] gi|257444404|gb|EEV19493.1| signal peptide peptidase SppA, 67K type [Treponema vincentii ATCC 35580] Length = 606 Score = 125 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 107/254 (42%), Gaps = 12/254 (4%) Query: 30 HVEDNSPHVARIAIRGQIEDSQE----------LIERIERISRDDSATALIVSLSSPGGS 79 ++ + I + G I + + L + ++ + DDS A+++ + S GG Sbjct: 318 KKKETDNQIGVIYLTGSITGTADNTADNADSPTLTDLFDQAADDDSIKAVVLRIDSGGGE 377 Query: 80 AYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 A E I R++ ++ + KPV+ + +AAS Y I+ +++ + + ++ GSIGV Sbjct: 378 VNASEDIRRSVDRLSKKIGKPVVVSMGSIAASGAYWIASSADYVFCSPYTITGSIGVFAV 437 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P ++ + + S+ + S F + + V +Y F+ V++ R Sbjct: 438 SPTIQNAVKEYFGIHVDGISATGRMPYSLFRNPTDEEKTQSELEVMHTYSVFLDKVAQGR 497 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 N+P L+ G+I++G AK++ L D +GG + + +K Sbjct: 498 NLPRATVEELAQGKIYSGTRAKELQLADELGGFTDAVNYAATKAGIKETYSLKVLYKEPP 557 Query: 258 YWFCDLKNLSISSL 271 LK L + Sbjct: 558 VADEILKTLLAENA 571 Score = 63.1 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 77/235 (32%), Gaps = 14/235 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 ++ + + R + D TA+++ LS G S+ + A+ + K+ + Sbjct: 95 SDITDALRRAAHDRRITAVLLDLSGLYGISSGHFTELKTALLEYKDSNKPLYAFSTGYGL 154 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE--PSPF 167 Y I+ ++ I + V G + + K G+ +V + K+ Sbjct: 155 GRYYIASFADHIYLDQMGEVNLSGFYTESLFYGEMEKKFGIQWNAVHAGAFKSMAETYTR 214 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAK 219 + ++ V + +++ ++ +R D L + + A Sbjct: 215 TGMSAGVHSNHLSVFTDLWQTYLQDIAANRASDADTLEAYAVHYNDALQKAKGDSAQAAL 274 Query: 220 KVGLIDVVGGQEE---VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 LI +G EE L + S R +++ + + I + Sbjct: 275 DANLITDIGTYEECGVALGVLDEETYNLSSRDFINYDDYNKTFKKKETDNQIGVI 329 >gi|71901706|ref|ZP_00683780.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Xylella fastidiosa Ann-1] gi|71728523|gb|EAO30680.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Xylella fastidiosa Ann-1] Length = 630 Score = 125 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 125/267 (46%), Gaps = 11/267 (4%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVS 72 + S + S +A + G+I + + ++ +D+ A+++ Sbjct: 317 LSLLDAQSALLGTSSQIAVVVAAGEIKGGDQPAGYIGGESTSMLLRKVRDEDAVKAVVLR 376 Query: 73 LSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 ++SPGG +A E I R + ++ KPV+ + +MAAS GY IS ++ I A +++ GS Sbjct: 377 VNSPGGEVFASEQIRREVVALRKVGKPVVVSMGDMAASGGYWISMDADRIYADPSTISGS 436 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IG+ P + LDK+GV V ++ ++P+ Q+ Q+V+D Y F Sbjct: 437 IGIFGLVPNITRTLDKVGVHTDGVGTTRFAGALDITRALDPQVGQIFQNVIDKGYADFTT 496 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-QSIRKIK 250 V+++R+ + ++ GR+W+GA+AK+ GL+D +GG E + ++ Sbjct: 497 KVAQARHRSVKEIDSIARGRVWSGAQAKERGLVDELGGVREAITDAAKRAKLGEGHYSVR 556 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIP 277 + + + + N+ + + + Sbjct: 557 YVDKAVSPFMQFIINMMSTRIGNWALG 583 Score = 76.2 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 49/326 (15%), Positives = 104/326 (31%), Gaps = 41/326 (12%) Query: 1 MEFVLKKIKTRYVM-LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--------- 50 M F + I L+ + + + + IA +G + + Sbjct: 21 MNFTRRLILNLVFFGFLLLMMLIGMTHGLKGKQLDDRTTLLIAPQGALVEQFSADPASRA 80 Query: 51 ---------------QELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVK 94 ++LI IE ++D +++ L S YA I A+Q +K Sbjct: 81 LAKATGDKSGQEVQLRDLIRVIEAAAKDKKVERVLLDLDKLQPSGYASLREIVAALQNLK 140 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL-DKLGVSIK 153 + E + YL++ ++ I V G+ Y + L +KLGV + Sbjct: 141 GSGKQLVAFSESMTQSQYLLAAQADEIYLDPMGSVFLEGLAHYRQYFRKGLQEKLGVDVH 200 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF + A + ++ + ++ ++++R + + + Sbjct: 201 LFRVGEYKSAAEPFVLDAASADAKEADLFWMNDIWQRYLADIAKARKLDSAHLNTIVERL 260 Query: 212 IW--------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR----KIKDWNPPKNYW 259 A L+D + +E+V Q + GV + D+ + Sbjct: 261 PQDIAANHGDLAKYALAQKLVDGLKTREQVNQLMIQRGVADKKADGGFRNVDFGTYLSLL 320 Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQ 285 L SS + + + Sbjct: 321 DAQSALLGTSSQIAVVVAAGEIKGGD 346 >gi|148241743|ref|YP_001226900.1| periplasmic serine proteases (ClpP class) [Synechococcus sp. RCC307] gi|147850053|emb|CAK27547.1| Periplasmic serine proteases (ClpP class) [Synechococcus sp. RCC307] Length = 261 Score = 125 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 124/256 (48%), Gaps = 13/256 (5%) Query: 41 IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK- 97 I++ G I + + +++ + ++ L++ + SPGG+ + I +A+ +++ Sbjct: 16 ISLTGPIAGAARKRVVKALRQVEE-RKFPVLLLRIDSPGGTVGDSQEIHQALLRLRESGC 74 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 V+ ++AS G + CA++ IVA ++ GSIGV+ + ++ L+++G+ ++VKS Sbjct: 75 QVVASYGNISASGGVYVGCAADRIVANAGTITGSIGVILRGNNLEKLLERVGIRFETVKS 134 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 K SP ++ ++Q ++DSSY FV V++ R + + +DGR+++GA+ Sbjct: 135 GLYKDILSPDKPLSEGERSILQALIDSSYSQFVAAVAQGRKLSEETVRTFADGRVFSGAQ 194 Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 A ++G++D++G ++ + L + + L + Sbjct: 195 ALELGMVDLLGDEDTARREAARLAGLDEE--------KSQPVELGKERAGLVQKLRQELQ 246 Query: 278 LMKQTKVQGLWAVWNP 293 L Q LW ++ P Sbjct: 247 LQLAWGGQPLW-LFRP 261 >gi|145631778|ref|ZP_01787538.1| protease IV [Haemophilus influenzae R3021] gi|144982568|gb|EDJ90118.1| protease IV [Haemophilus influenzae R3021] Length = 289 Score = 125 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 69/250 (27%), Positives = 124/250 (49%), Gaps = 14/250 (5%) Query: 42 AIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 + G I D + + + + D+S A+I+ ++SPGGSA+A E I + + Sbjct: 2 NVEGTIIDGESDEENAGGDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEIIRQETEN 61 Query: 93 VKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 ++ KPVI + MAAS GY IS ++ I+A ++ GSIG+ +P + + K+GV+ Sbjct: 62 LQKIGKPVIVSMGAMAASGGYWISSTADYIIADANTITGSIGIFTMFPTFENSIKKIGVN 121 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 V ++ + S FS + + Q ++ Y F+ +VS+ R + + L+ G+ Sbjct: 122 ADGVSTTELAKT-SAFSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVDKLAQGQ 180 Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 +W G++A + GL+D +G E L + ++D++ WF D IS+L Sbjct: 181 VWLGSDAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNVSLISTL 237 Query: 272 LEDTIPLMKQ 281 L DT ++ Sbjct: 238 LRDTKKGAQE 247 >gi|255532961|ref|YP_003093333.1| signal peptide peptidase SppA, 67K type [Pedobacter heparinus DSM 2366] gi|255345945|gb|ACU05271.1| signal peptide peptidase SppA, 67K type [Pedobacter heparinus DSM 2366] Length = 590 Score = 125 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 108/248 (43%), Gaps = 11/248 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPGG 78 S VA I G I S+ + + I + D A+++ ++SPGG Sbjct: 300 KDQPTSASQKVAIIYANGDIMGGDGSDHQIGSERISKAIRKARLDTDIKAVVLRVNSPGG 359 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 SA A + I+R I K KPVI ++AAS GY I+CA++ I ++ GSIGV Sbjct: 360 SALASDVIWREIVLTKKIKPVIASFGDVAASGGYYIACAADSIFVQPNTITGSIGVFGII 419 Query: 139 PYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P + DKLG++ VK+ S + ++Q+ V+ Y F+ V++ R Sbjct: 420 PNFQKLFNDKLGITFDGVKTGKYADIMSVDRPMTAGERLIVQNDVNRVYDSFITRVADGR 479 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 + GR+W G +A ++GL D G + + + I ++ ++ Sbjct: 480 KRTKAYIDSIGGGRVWVGTDAVRIGLADRTGNFNDAIIAAAKKAKIKD-YSIVEYPEMRD 538 Query: 258 YWFCDLKN 265 + + N Sbjct: 539 PFKSLMDN 546 Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 101/275 (36%), Gaps = 25/275 (9%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------ 51 V+ + L+ V V NS V + + I + Sbjct: 16 VISLALFLVFFVLLIIGIVKTSLKEQKVSVNSNSVLLLNLDQSITERTADDPLSRLPLVG 75 Query: 52 ----------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 ++I +++ DD+ + ++++SP I A+ K K I Sbjct: 76 SDEDKSIGFNDVIRALQKAKTDDNIKCVYINVTSPQAGFATMREIRDALIDFKTSKKKII 135 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 E+ Y ++ A++ I + G+ + + K LDKLG+ + V+ K Sbjct: 136 AYSEVYTQGAYYLASAADKIYLNPEGALEFKGLKSETMFFKGALDKLGIEAQIVRVGNYK 195 Query: 162 AEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL-SDGRIWTGAEA 218 + PF +++ K + + + Y F+ +++SRNI + + D +I +A Sbjct: 196 SAVEPFFAEKMSDKNREQVTAYLHGLYDTFLEGIAKSRNISTETLYQIADDYKIRQPQDA 255 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 ++D + ++++ L L + + + Sbjct: 256 VAYKMVDELKYKDQIIDELKTLSGKEKKNDLTTIS 290 >gi|226496121|ref|NP_001146232.1| hypothetical protein LOC100279804 [Zea mays] gi|224028317|gb|ACN33234.1| unknown [Zea mays] Length = 672 Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 61/259 (23%), Positives = 118/259 (45%), Gaps = 16/259 (6%) Query: 32 EDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSLSSPGG 78 + +A I G I +++LIE+I + + A+I+ + SPGG Sbjct: 365 QGGGEQIAIIRASGSITRTRSPLSAPSSGIVAEQLIEKIRTVRESEKYKAVILRIDSPGG 424 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A A + ++R I+ + N KPV+ + ++AAS GY ++ A+ +IVA + +L GSIGV+ Sbjct: 425 DALASDLMWREIRLLANSKPVVASMSDVAASGGYYMAMAAPVIVAEKLTLTGSIGVVTGK 484 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKA-EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 ++ +++ + + + + + P ++ + ++Y F + SR Sbjct: 485 FCLQKLYERIDFNKEIISKGRYAELNVNDQRPLRPDEAELFEKSAQNAYALFRDKAAMSR 544 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--KDWNPP 255 ++ D+ ++ GR+W+G +A GL+D VGG + +KI + + P Sbjct: 545 SMSVDQMESVAQGRVWSGHDAFSRGLVDSVGGLSQALAIAKQKANIPKDKKIQLVEVSKP 604 Query: 256 KNYWFCDLKNLSISSLLED 274 L + S L D Sbjct: 605 SPSLPEILSGIGGSLLGVD 623 Score = 83.5 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 33/252 (13%), Positives = 92/252 (36%), Gaps = 13/252 (5%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSA 66 + + + V + +RG+I D ++ E + + D Sbjct: 102 LAVKLRMLVAPPWQRVRKGSVLNMKLRGEISDQLKTRFSSGLSLPQICENFVKAAYDPRI 161 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 + + + + + I R I K + + Y ++CA + A + Sbjct: 162 SGIYLHIEPLRCGWAKVDEIRRHIVDFKKSGKFVVGYMPVCGEKEYYLACACGELYAPPS 221 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDS 184 + V G+ Q +++ L+K+G+ + + K+ + ++ + +M+ ++D+ Sbjct: 222 AYVALFGLTVQQTFLRGVLEKVGIEPEIQRIGKYKSAGDQLARKSMSNEVREMLAALLDN 281 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 Y ++ +S + ++ + ++ A K+ G + + +EV L + Sbjct: 282 IYGNWLETISSTHGKKKEEIEGFINSGVYQVARLKEEGWVTDLLYDDEVMTLLKERVGQK 341 Query: 245 SIRKIKDWNPPK 256 + ++ + K Sbjct: 342 DKKSLRMVDYSK 353 >gi|116073506|ref|ZP_01470768.1| Periplasmic serine protease (ClpP class) [Synechococcus sp. RS9916] gi|116068811|gb|EAU74563.1| Periplasmic serine protease (ClpP class) [Synechococcus sp. RS9916] Length = 269 Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 67/256 (26%), Positives = 125/256 (48%), Gaps = 5/256 (1%) Query: 41 IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK- 97 IAI G I + +++ + + + + AL++ + SPGG+ + I A+ +++ + Sbjct: 16 IAIEGAIASGTRKRVLKALREVEQRE-FPALLLRIDSPGGTVGDSQEIHAALLRLREKGC 74 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 V+ ++AS G I A+ IV+ + GSIGV+ + + L+++G+ ++VKS Sbjct: 75 HVVASFGNISASGGVYIGVAAEKIVSNPGCITGSIGVILRGNNLSKLLERVGIRFETVKS 134 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 K SP ++ +++Q ++DSSY FV V+E R + D +DGR+++GA+ Sbjct: 135 GAYKDILSPDRALSADERELLQALIDSSYAQFVDAVAEGRGLSPDTVRKFADGRVFSGAQ 194 Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 K++GL+D +G +E L K PK L S+ + L + + Sbjct: 195 GKELGLVDELGDEERARALAAELADLDEDCKPITLGKPKKKLLASLPGSSVVARLAEMLE 254 Query: 278 LMKQTKVQGLWAVWNP 293 Q LW ++ P Sbjct: 255 TELSHSGQALW-LYRP 269 >gi|312109911|ref|YP_003988227.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. Y4.1MC1] gi|311215012|gb|ADP73616.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. Y4.1MC1] Length = 336 Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 70/277 (25%), Positives = 133/277 (48%), Gaps = 25/277 (9%) Query: 37 HVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYA 82 + + + G I+D+ + + IE+ DD+ A+I+ + SPGG Sbjct: 61 KIVVLEVNGVIQDAGDTEALFTASGYNHRAFLRMIEQAKNDDTVKAIILRVDSPGGGVVE 120 Query: 83 GEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 I + K+K P+ + MAAS GY IS A++ I A+ +L GS+GV+ Q Sbjct: 121 SAEIHDQLLKLKKETKKPIYVSMGTMAASGGYYISTAADKIFASPETLTGSLGVIIQSFN 180 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + K GV + ++KS P K +P ++ + +++Q ++ +SY FV+++SE R++P Sbjct: 181 YEGLAKKYGVELVTIKSGPYKDIMNPARKMTEEEKEILQRLIHNSYEGFVKVISEGRHLP 240 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 + ++DGRI+ G +AK++ LID G E+ ++ + + +K ++ F Sbjct: 241 ESEVRKIADGRIYDGRQAKQLKLIDEFGYLEDTIAAIKKDYDLANAQVVKY---TNDFSF 297 Query: 261 CDLKNLSISSLLE------DTIPLMKQTKVQGLWAVW 291 L + +S ++ + I L L ++ Sbjct: 298 GSLFKMELSRMIAPKHEATELIKLFSNPSSPRLMYLY 334 >gi|83644957|ref|YP_433392.1| periplasmic serine protease (ClpP class) [Hahella chejuensis KCTC 2396] gi|83633000|gb|ABC28967.1| Periplasmic serine protease (ClpP class) [Hahella chejuensis KCTC 2396] Length = 329 Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 68/267 (25%), Positives = 124/267 (46%), Gaps = 15/267 (5%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISRDDSA 66 ++ L + + + + PH A I + G I S+E ++ + ++SA Sbjct: 52 FLYLFFIVIALSPGVGKNVAARTEPHTAVIEVNGVIAASEEANADAIVSALRDAFEEESA 111 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCASNIIVA 123 A+I+ ++SPGGS ++ I ++ K V + ++ AS Y I+ A++ I A Sbjct: 112 KAVILRINSPGGSPVQAGYVYDEIGRLKGEYPDKKVYAVIMDIGASGAYYIAAAADEIYA 171 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 + SLVGSIGV +DKLGV + + K+ PF V ++ Q V++ Sbjct: 172 DKASLVGSIGVTASGFGFVDAMDKLGVERRIFTAGEHKSFLDPFVPVKEDERELWQGVLN 231 Query: 184 SSYHWFVRLVSESRNIP-YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 +++ F+ V + R + +L G IW+G +A +GLID +G V + + Sbjct: 232 TTHKQFIEQVEKGRGDRIHKDNPLLYSGMIWSGEQALGLGLIDGLGSSGFVAREVVK--- 288 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSIS 269 + K+ ++ P +N + L L +S Sbjct: 289 ---VEKLINYTPKRNPFDELLGKLGVS 312 >gi|90408812|ref|ZP_01216955.1| putative protease IV [Psychromonas sp. CNPT3] gi|90310074|gb|EAS38216.1| putative protease IV [Psychromonas sp. CNPT3] Length = 616 Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 66/277 (23%), Positives = 130/277 (46%), Gaps = 13/277 (4%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSS 75 ++ + +A I G+I + + + ++ + A+++ L S Sbjct: 315 VISNNAETNQEDIIALIHGSGEIINGESNNSVMAGQSFSQLLQDALDNKRVKAVVIRLDS 374 Query: 76 PGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 PGGSA A E I + + +K K V+ + ++AS GY I+ A++ IVA T+L GSIG+ Sbjct: 375 PGGSATASEKIRQKVLALKKSGKKVVISMASVSASGGYWIASAADHIVAYPTTLTGSIGI 434 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 Y + L+KLG+ V ++P+ P ++ ++Q ++ Y F+ +VS Sbjct: 435 FALYASAEKALNKLGIYNDGVGTAPLSGL-DPTRALDKDIADLLQMAIEHGYQQFLTVVS 493 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 E R++ + ++ GR+WTG +AK++GL+D +G E+ + L ++K Sbjct: 494 EGRHMSVEDVDKIAQGRVWTGTDAKRLGLVDQLGNLEDAIKKAAQLAKL-DSYQVKSIQM 552 Query: 255 PKNYWFCDLKNLSISSL-LEDTIPLMKQTKVQGLWAV 290 + ++ + L PL+ ++ L ++ Sbjct: 553 KLSPVEQMFNDVFAQGVQLITPQPLLNSPILKTLQSL 589 Score = 83.9 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 89/288 (30%), Gaps = 41/288 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------- 50 + +L ++ L + + E N+ + + G+I + Sbjct: 15 INITRLFFLNSIFILVIIGLLFLLNQSPNEAEINNNSILTLNFSGRIVEQKTPKEFSDEI 74 Query: 51 ----------------QELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIFRAIQKV 93 ++I I D TA+++ L S I A+ + Sbjct: 75 SKQLFSSEQTQQEYQVDDIINSIHHAQNDPKITAILLQLDDLQSASLNQIMDIGAALNQF 134 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + + + YL++ ++ I +V G Y K LDKL ++ Sbjct: 135 KTSNKPVIASADNYSQIQYLLASYADNIALDPQGIVYLPGFSVYRLYFKDALDKLLITPH 194 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL------ 205 K K+ PF + ++ ++ + + + +++ V R Sbjct: 195 IFKVGTYKSFVEPFTQNHMSAQSKDANERWLGQLWQTYIQTVLSQRKDNKKINAQSISPK 254 Query: 206 ------VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 + + A +VGL+D + ++V +L + Sbjct: 255 IAALKIAFKKAKGDSALYALQVGLVDDLTSTDDVLNALKKDAKQAGNK 302 >gi|15602536|ref|NP_245608.1| hypothetical protein PM0671 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720949|gb|AAK02755.1| SppA [Pasteurella multocida subsp. multocida str. Pm70] Length = 627 Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 65/269 (24%), Positives = 125/269 (46%), Gaps = 16/269 (5%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSL 73 + E+ +A + + G I D + + + + DD+ A+I+ + Sbjct: 315 LSLLPDRLSEEGQYKIAVVNVEGAIIDGESDEHEVGGDTIARLLRQAHDDDNVKAVILRV 374 Query: 74 SSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 +SPGGSA+A E I + + ++ KPV+ + MAAS GY IS ++ I+A + ++ GSI Sbjct: 375 NSPGGSAFASEIIRQEVDNLQALGKPVVVSMGAMAASGGYWISSTADYIIADKNTITGSI 434 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 G+ +P + L K+G+S V +S + + + + + + ++S Y F+ + Sbjct: 435 GIFALFPTFEKTLKKVGISADGVSTSALSSSSRFSGLSSEMSDILQLE-IESGYDKFLSV 493 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 VS R + ++ ++ G+IW G EA K L+D +G + L ++ D Sbjct: 494 VSRGRGMTVEEVDKVAQGKIWLGEEAVKHNLVDELGHFNLAVEKASELAN-----QLLDE 548 Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 +Y+ + L D +P +K+ Sbjct: 549 KEKVDYFALQWMVEDEQNFLSDLLPTLKR 577 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 119/329 (36%), Gaps = 44/329 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVE-------DNSPHVARIAIRGQIEDSQ-- 51 + F+ + + + ++ + V + + +N + + + G + D++ Sbjct: 15 LNFIRELVMNIVFLFFVLLVAAVVGIFFHSNKIQHPMMLENEKYALLLNLDGYLADNREE 74 Query: 52 -----------------------ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIF 87 +++ I+ +DD + L++ L+ G A E + Sbjct: 75 SMSWQKALKELDNQHVPRQISTFDIVYMIDHAKKDDRISGLVLDLNFFEGADLPALEYVG 134 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + I K + + + + YL++ ++ I V G+ + Y K L+ Sbjct: 135 QTINAFKESQKPVIAFADNLGQSQYLLASYADEIYINPIGQVDITGLRQENLYFKSMLEN 194 Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204 L V+ + K+ PF ++P+A + + + + +H + ++V+++R I D Sbjct: 195 LDVTAHIFRVGTYKSAVEPFLRDNMSPEAKTDLSEWLGAMWHNYKQIVAKNRQIDPDDVL 254 Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 L + + A ++ L+ + + E+ + L I+ + ++ Sbjct: 255 PASSKYIQALKMLKGDSTAYTQQRQLVTGLANRLEIDEKLLERFGQDKNDNIRLIDY-ED 313 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 Y LS + + ++ + G Sbjct: 314 YLSLLPDRLSEEGQYKIAVVNVEGAIIDG 342 >gi|260753451|ref|YP_003226344.1| signal peptide peptidase SppA, 67K type [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552814|gb|ACV75760.1| signal peptide peptidase SppA, 67K type [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 637 Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 75/272 (27%), Positives = 128/272 (47%), Gaps = 11/272 (4%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSA 66 S +++ F ++ + + + G+I D + + I Sbjct: 297 SFKAVSLASFIGANPPSSAGSAIGVVTVSGEIVDDETRSGQVSGSTISSLILDTLAKGDI 356 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAE 125 AL+V + SPGGS A E + AI K + PVI + +AAS GY IS ++ I A Sbjct: 357 KALVVRVDSPGGSVSAAEQMRSAILAAKAKGLPVIVSMGSVAASGGYWISTPADKIFADP 416 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 +++ GSIGV P + L K+G+S VK++P+ +P F P+ Q+MQ VD+ Sbjct: 417 STITGSIGVFSLIPTFQQTLHKIGLSADGVKTTPLSGQPDVFRGTTPEFDQLMQFGVDTI 476 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y F +V+ SR++P +K +++GR+W+G +AKK+GL+D G ++ Sbjct: 477 YDRFTSIVASSRHLPLEKVREIAEGRVWSGVDAKKIGLVDQYGSLQDAVTEAAKRAHLDP 536 Query: 246 I-RKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 ++ + ++ LKNL + I Sbjct: 537 SHTHMQFIDEEPSFVEMILKNLFQHQASDAKI 568 Score = 69.3 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 48/282 (17%), Positives = 95/282 (33%), Gaps = 39/282 (13%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSH----------VEDNSPHVARIAIRG--------- 45 +K + +++ V ++ + I G Sbjct: 14 IKDVLALILLVLFFGAIFVGLCLTTKNGAISSRNLGAASAADGALLIDFSGNLVEKAEGT 73 Query: 46 ----QIEDS--------QELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQK 92 I+D+ ++++ +E+ +R+ A+++ GG A A+ A+ K Sbjct: 74 NFLDLIQDNNNQNEILLRDVVYGLEQAARNPKIKAVVLDLSDFSGGGRAAISAVDNALDK 133 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 V+ + A Y I+ I V +GV Y K LDKLGV Sbjct: 134 VRAAGKPVLSFAGFYNDARYRIAAHGTEIWLPNLGEVALLGVGGNQLYYKGLLDKLGVET 193 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 K + K+ PF +E +P A Q + +S + ++ ++ +R + L+ Sbjct: 194 KIYRVGRFKSFVEPFTRTEQSPDAKAANQALANSLWQTTLQDIAHARPKAHVAEWALNPT 253 Query: 211 RIW-----TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 A+ G+ID +G + + +L Sbjct: 254 SFLKSGHSFAELAQSAGIIDHIGNAIDFGTRVASLVGKDKQP 295 >gi|123966585|ref|YP_001011666.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus marinus str. MIT 9515] gi|123200951|gb|ABM72559.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus marinus str. MIT 9515] Length = 269 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 70/264 (26%), Positives = 129/264 (48%), Gaps = 5/264 (1%) Query: 33 DNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + +ARI I I S +I+ +++I D ALI+ + SPGG+ + I+ AI Sbjct: 8 KSKKRMARIVIDEPITSSTRVSVIKALKQI-EDREFPALILRIDSPGGTVGDSQEIYSAI 66 Query: 91 QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 ++++ + V+ ++AS G I ASN IVA ++ GSIGV+ + + L+K+G Sbjct: 67 KRLREKGCKVVASFGNISASGGVYIGVASNKIVANPGTITGSIGVIIRGNNLSELLNKIG 126 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + ++VKS K SP ++ + +++Q ++D SY F V+E R++P + +D Sbjct: 127 IKFETVKSGIYKDILSPDKPLSDEGREILQGLIDESYKQFTEAVAEGRDLPVEDVKKFAD 186 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 GRI+TG +AKK+GL+D +G + + + + + K + I Sbjct: 187 GRIFTGTQAKKLGLVDEIGDEFTARELAAEMVKIDPKIQPVTFGKKKKKILGLIPGSKII 246 Query: 270 SLLEDTIPLMKQTKVQGLWAVWNP 293 + I + + ++ P Sbjct: 247 EKIIQNI-FFEVNSTNKILWLYKP 269 >gi|114569418|ref|YP_756098.1| signal peptide peptidase SppA, 36K type [Maricaulis maris MCS10] gi|114339880|gb|ABI65160.1| signal peptide peptidase SppA, 36K type [Maricaulis maris MCS10] Length = 595 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 68/270 (25%), Positives = 127/270 (47%), Gaps = 19/270 (7%) Query: 33 DNSPHVARIAIRGQIE---------DSQELI------ERIERISRDDSATALIVSLSSPG 77 +N P +A I +G I +E+I E I + D+S A+++ + SPG Sbjct: 296 NNGPIIALIEGQGAIVTGTPTGSPFGGEEMIGGDFMSEAILAAADDNSVRAIVIRVDSPG 355 Query: 78 GSAYAGEAIFRAI-QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GSA A + ++ AI + + KPVI + MAAS GY I+ ++ ++A ET+L GSIGVL Sbjct: 356 GSAIASDQVWHAITRAREAGKPVIVSMASMAASGGYYIAAPADYVLAHETTLTGSIGVLG 415 Query: 137 QYPYVKPFLDKLGVSIKSVKSS-PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 ++ D +G++ +++ S E + + Y F + V++ Sbjct: 416 GKIVLEGTFDLVGLNAETIAVGGEYATAFSAQQEWTDSQRAAYRSQMSDIYDDFTQRVAD 475 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--KDWN 253 R++P ++ L ++ GRIWTGA+A +GL+D +GG + + + +I + + Sbjct: 476 GRDLPLERVLEIARGRIWTGAQALDLGLVDEIGGLRDAIGAARQFAGIDAEARIRLRRYP 535 Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 ++ + +S+ + + Sbjct: 536 AQRSPMEAFQELFGVSAETAQSAARLNALM 565 Score = 83.9 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 46/298 (15%), Positives = 95/298 (31%), Gaps = 24/298 (8%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIR---GQIEDSQ------------ 51 + T + + L+ + + E P A + + G+++ Sbjct: 20 LLTLVLGVFLIFAMIGALVEGAQTETALPQTAMVLELDLRDGRLDSPSRSPFGFSDPLST 79 Query: 52 -ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 EL+ +ER DD L + + G S A E + AI+ + + + Sbjct: 80 VELVRTLERAESDDRVAGLFIRANEFGMSPGAAEELRGAIEDFRAAGKFVVTHAQGFEGT 139 Query: 111 GYLISCA---SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV--SIKSVKSSPMKAEPS 165 A S+ I +T+ + G+ + ++ + A Sbjct: 140 SVTGYFAVSGSDQIWLQDTTSFTAAGLASETMFLGGLFAHFDAVPQFEQFHEYKGAANTY 199 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 S+ + + + S Y V ++E R + D + + T EA+ +GLID Sbjct: 200 TQSDFTEAHREATESFLGSIYDTAVLRIAEDRGLQADALRAMFESAPHTAEEAQSLGLID 259 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 +G E +++ + N I +L+E ++ T Sbjct: 260 QLGQVVEAREAV--RARLDGEASFVEIAQYHAQAAPTWNNGPIIALIEGQGAIVTGTP 315 >gi|301156103|emb|CBW15574.1| protease IV (signal peptide peptidase) [Haemophilus parainfluenzae T3T1] Length = 620 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 117/236 (49%), Gaps = 11/236 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGG 78 S + VA + + G I D + + + + ++ A+++ ++SPGG Sbjct: 319 FSVDPNEKNIVAVVNVEGTIIDGESNEESAGGDTIARLLRQAHDNEKVKAVVLRVNSPGG 378 Query: 79 SAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 SA+A E I + + ++ KPV+ + MAAS GY IS ++ IVA + ++ GSIG+ Sbjct: 379 SAFASEIIRQETENLQKAGKPVVVSMGGMAASGGYWISSTADYIVADKNTITGSIGIFAL 438 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 +P + + K+G+S V ++ + + S +N + Q +++ Y F+ +VS R Sbjct: 439 FPTFENTIKKMGMSTDGVATTDLAETSAL-SPLNKNTQDIYQLGIENGYDRFLEVVSRGR 497 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 + DK ++ G++W G +A K L+D +G + + + AL + + ++ Sbjct: 498 QLSKDKVDKIAQGQVWLGQDAHKNALVDELGDIDVAIEKVGALVNQNPDKYMDSFS 553 Score = 71.2 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 86/237 (36%), Gaps = 34/237 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVE-----DNSPHVARIAIRGQIEDSQ---- 51 + F+ + + +V L V + + + + G + D+ Sbjct: 15 LNFI-RNLVMNFVFLLFVLALIFLVGLFGDGKKSQVLSGDQGALYLNLTGYLADNTEDML 73 Query: 52 ---------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRA 89 ++++ I D+ L+++L+ G E + +A Sbjct: 74 SWEKELQRLNNEKVSYKYSTFDVVQSILSAKDDERIRGLVLNLNDFEGGDLPSLEYVGKA 133 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 IQ K + + + + Y ++ ++ I VG G+ ++ Y K L+KL Sbjct: 134 IQSFKESEKPVIAYADNYTQSQYFLASFADEIYLNPIGQVGIQGLRYENLYFKSMLEKLE 193 Query: 150 VSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 ++ + K+ PF +++P+A MQ + + +++ + +R+I + Sbjct: 194 ITPHIFRVGTYKSAVEPFLRDDMSPEARANMQKWLGGMWQNYMQTLMVNRHITANDV 250 >gi|254448114|ref|ZP_05061577.1| peptidase S49 [gamma proteobacterium HTCC5015] gi|198262240|gb|EDY86522.1| peptidase S49 [gamma proteobacterium HTCC5015] Length = 318 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 67/278 (24%), Positives = 126/278 (45%), Gaps = 16/278 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVE-DNSPHVARIAIRGQIEDSQE-----LIERI 57 + + T + L+ ++ + +S HVA + + G I + L+ + Sbjct: 33 IFMWMLTLLYLTVLILVSSGAWQFSGKSNPIKGEHVAVVQVNGIIAPDSDASADMLVPAM 92 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLI 114 +++A AL++ ++SPGGS E ++ I ++ KPV + ++ AS Y I Sbjct: 93 RDAMENENAKALLLRINSPGGSPVQSELVYSEILRLRSEYPEKPVYAVIEDIGASGAYYI 152 Query: 115 SCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 + A+ I A E+S+VGSIGV L+KLGV + S KA PF + Sbjct: 153 ASAAENIYAIESSIVGSIGVTSGGSFGFVKALEKLGVERRIYTSGENKAFLDPFLPEKQQ 212 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 ++ + +++S + F++ V++ R L G +WTG E+ ++GLID G + Sbjct: 213 DIERYESMLNSVHQQFIKAVTDERGERLKDDGELFSGYVWTGEESLELGLIDGFGDMRGI 272 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 + ++ +I D+ ++ +NL S+ Sbjct: 273 AREMFE------TDEIVDYTRQADFLTRFAENLGASAA 304 >gi|149181105|ref|ZP_01859605.1| protease IV (signal peptide peptidase) [Bacillus sp. SG-1] gi|148851192|gb|EDL65342.1| protease IV (signal peptide peptidase) [Bacillus sp. SG-1] Length = 354 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 69/284 (24%), Positives = 131/284 (46%), Gaps = 25/284 (8%) Query: 30 HVEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSS 75 + +A + + G I+D +E++ R+ DDS A+I+ ++S Sbjct: 72 EEGSAAKRIAVLEVEGVIQDVNTATSIFESPGYNHELFMEQLRRVQEDDSIRAVILKVNS 131 Query: 76 PGGSAYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 PGG I + +++ +KP+ + MAAS GY I+ + I A+ +L GS+G Sbjct: 132 PGGGVVESAQIHEKLVEIQEEAKKPIYVSMGSMAASGGYYIAAPAEKIFASRETLTGSLG 191 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V+ Q +K GV ++KS P K SP E+ + +++Q +V++SY FV ++ Sbjct: 192 VIMQSINYSELAEKYGVDFVTIKSGPHKDIMSPTREMTEEEREILQSMVNNSYEGFVDVI 251 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 ++ R + D+ ++DGR++ G +AK++ LID G E+V + + + I Sbjct: 252 AQGRGMSEDQVKKIADGRVYDGIQAKEINLIDDFGYIEDVIAQMKKDLKLEDAQVI---E 308 Query: 254 PPKNYWFCDLKNLSISSL------LEDTIPLMKQTKVQGLWAVW 291 + F L ++ L + ++ Q L ++ Sbjct: 309 YTNDGGFASLLDMGAKRLAGGDIEAAALMKILSQPNSPRLMYLY 352 >gi|108762546|ref|YP_635601.1| signal peptide peptidase SppA, 67K type [Myxococcus xanthus DK 1622] gi|108466426|gb|ABF91611.1| signal peptide peptidase SppA, 67K type [Myxococcus xanthus DK 1622] Length = 680 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 117/282 (41%), Gaps = 20/282 (7%) Query: 28 SSHVEDNSPHVARIAIRGQIE---------------DSQELIERIERISRDDSATALIVS 72 + + +A + G++ ++ + + + + D A++ Sbjct: 368 AGKPNVSGNTIALVYGVGEVMRGKNQSNPLSGGQSMGAESVAAALRKATEDSRVKAIVFR 427 Query: 73 LSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 + SPGGS A + + R +Q+ + KPVI + AAS GY ++ ++ IVA +L GS Sbjct: 428 VDSPGGSYVASDTVRREVQRAKEAGKPVIVTMGSYAASGGYFVAMEADRIVAHPGTLTGS 487 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IGV F +KLGV+ SV + ++ P+ M +D Y F Sbjct: 488 IGVYAGKFVTAGFWEKLGVNFDSVAAGKNAEMFGSDADYTPEQQARMDASLDRIYADFTT 547 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI-K 250 + SR +P +K L+ GR+WTG +A GL+D +GG + + + ++ Sbjct: 548 RAAASRKLPLEKLQSLAKGRVWTGEDALAHGLVDALGGYPKALELAKEAAKLPADARVNV 607 Query: 251 DWNPPKNY---WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + P K +L + + +D + + L A Sbjct: 608 EVYPRKKPASALLSELLGQTGDNSEDDATSISVLSPWTTLVA 649 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 101/276 (36%), Gaps = 26/276 (9%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--------------- 49 L + V+ + + ++ + +S S V + + + + Sbjct: 93 LAFVGALSVLFVVGLVGLMLLASASKPGVPSNLVLELDLEDPLSEHGGGESLMGAFGEEP 152 Query: 50 --SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 ++++E +E+ D +L+V + P G+ A + + A++ + + + Sbjct: 153 TTVRDVVEALEKAGDDARVKSLLVRIGHP-GTPAATQELRDAVKAFRAKGKKAVAYSDSF 211 Query: 108 -----ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 ++ GY ++ A + I + V G+ F+ P+ + +LGV+ + K Sbjct: 212 GELGNSTLGYYLASAFDEIYIQPSGDVNINGLAFELPFAREAFTRLGVTPRYFARYEYKN 271 Query: 163 EPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKK 220 + + + + + +S + VR ++E R + D L D EA + Sbjct: 272 AINSYTEQDFTAPHREATEGFTNSLFGQIVRGIAEDRGLTEDVVRGLIDKAPLMAQEAME 331 Query: 221 VGLIDVVGGQEEVWQSLYALGVD-QSIRKIKDWNPP 255 L+ + ++EV L + +K + Sbjct: 332 AKLVTGLRYRDEVLGGLKEQAGEGARFLYVKKYLER 367 >gi|257388867|ref|YP_003178640.1| signal peptide peptidase SppA, 36K type [Halomicrobium mukohataei DSM 12286] gi|257171174|gb|ACV48933.1| signal peptide peptidase SppA, 36K type [Halomicrobium mukohataei DSM 12286] Length = 331 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 66/266 (24%), Positives = 120/266 (45%), Gaps = 20/266 (7%) Query: 37 HVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYA 82 +VA +A+ G I ++++E+IER D + AL+V L++PGG Sbjct: 67 NVAEVAVEGPISRDGGGSLASPPVGARAEDIVEQIERADDDSAVDALLVELNTPGGEIVP 126 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I A ++ P + ++ AS GY I+ + + A E S+VGSIGV+ K Sbjct: 127 SEDIRLAAERF--DGPTVGYATDVCASGGYDIAAGCDELWAREGSIVGSIGVIGSRVNAK 184 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 D++G+S + + K +P E + + +Q +VD Y FV V+E R + Sbjct: 185 ELADRVGLSYEQFTAGTFKDAGTPLKEFEQEEREYLQSIVDDYYEQFVDTVAEGRELDAA 244 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + ++ RI+ G+EA ++GL+D +G + +V L + ++ + P + Sbjct: 245 EIRD-TEARIFLGSEAHELGLVDEIGTRRDVEAKLEEQLGEP--VTVEAFEPSRGLAGRL 301 Query: 263 LKNLSISS-LLEDTIPLMKQTKVQGL 287 ++ L + + GL Sbjct: 302 QTGAQTAAFALGAGVASAFDGDLDGL 327 >gi|226326247|ref|ZP_03801765.1| hypothetical protein PROPEN_00089 [Proteus penneri ATCC 35198] gi|225205325|gb|EEG87679.1| hypothetical protein PROPEN_00089 [Proteus penneri ATCC 35198] Length = 404 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 69/269 (25%), Positives = 132/269 (49%), Gaps = 14/269 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGG 78 SS ++ ++A + ++G I D + + +I + D + AL++ ++SPGG Sbjct: 107 SSLPANDEGNIAVVVVQGAIIDGESIPGSAGGTTIANQIRQARLDPNIKALVLRVNSPGG 166 Query: 79 SAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 S A E I + + +K V+ + +AAS GY IS +N I+A+ ++L GSIG+ Sbjct: 167 SVSASEQIRSEVAAFKQQKKHVVVSMGGLAASGGYWISTPANKIIASPSTLTGSIGIFGV 226 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + L+ +GV V +SP+ +++ + +++Q ++S Y F+ LV+ESR Sbjct: 227 INTFENSLESIGVYTDGVTTSPLAGLSVT-NKLPEEFAELLQLNIESGYKTFIHLVAESR 285 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 + ++ GR+W G +AK VGL+D G ++ + + + + DW P+ Sbjct: 286 KKTPAQIDRIAQGRVWVGIDAKNVGLVDEFGDFDDAIDAAAKMAKI--DQPVVDWMKPEL 343 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + +S+SS + +P Q + Sbjct: 344 SLSEQII-MSLSSNAKALLPDPLQAYIPA 371 >gi|115448437|ref|NP_001047998.1| Os02g0728100 [Oryza sativa Japonica Group] gi|46390611|dbj|BAD16095.1| putative protease IV [Oryza sativa Japonica Group] gi|113537529|dbj|BAF09912.1| Os02g0728100 [Oryza sativa Japonica Group] Length = 674 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 130/285 (45%), Gaps = 19/285 (6%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALI 70 W+ ++ +A I G I +++LIE+I + + A+I Sbjct: 359 VSKWTLGLQGGGEQIAVIRASGSITRTRSPLSVPSSGIIAEQLIEKIRTVRESEKYKAVI 418 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + + SPGG A A + ++R I+ + + KPV+ + ++AAS GY ++ A+ +IVA + +L G Sbjct: 419 LRIDSPGGDALASDLMWREIRLLADTKPVVASMSDVAASGGYYMAMAAPVIVAEKLTLTG 478 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP-FSEVNPKAVQMMQDVVDSSYHWF 189 SIGV+ ++ +++ + + + + + P ++ + ++Y F Sbjct: 479 SIGVVTGKFILQKLYERIDFNKEIISKGRYAELNAADQRPLRPDEAELFEKSAQNAYALF 538 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 + SR++ D+ ++ GR+W+G +A GL+D +GG + RK+ Sbjct: 539 RDKAAMSRSMNVDQMETVAQGRVWSGQDAASRGLVDSLGGFSQALAIAKQKANIPHDRKV 598 Query: 250 --KDWNPPKNYWFCDLKNLSISSL-LEDTIPLMKQ--TKVQGLWA 289 + + P L + S L ++ + + Q T + G+ A Sbjct: 599 QLVEISKPSPTLPEILSGIGSSLLGVDRAVKGVLQDVTSLNGVQA 643 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 38/285 (13%), Positives = 101/285 (35%), Gaps = 17/285 (5%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSA 66 + + + V + +RG+I D ++ E + + D Sbjct: 104 LAVKLRMLVAPPWKRVRKGSVLNMKLRGEISDQLKTRFSSGLSLPQICENFVKAAYDPRI 163 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 + + + + + I R I K + + Y ++CA + A + Sbjct: 164 SGIYLHIEPLRCGWGKVDEIRRHIVDFKKSGKFVVGYMPVCGEKEYYLACACGELYAPPS 223 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDS 184 + V G+ Q +++ L+K+G+ + + K+ + ++ + +M+ ++D+ Sbjct: 224 AYVALFGLTVQQTFLRGVLEKVGIEPEIQRIGRYKSAGDQLARKSMSNEVREMLATLLDN 283 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG--V 242 Y ++ +S ++ + ++ A K+ G I + +EV L Sbjct: 284 IYGNWLDTISSKHGKKKEEIEEFINSGVYQVARLKEEGWITDLLYDDEVMAMLKERVAQK 343 Query: 243 DQSIRKIKDWNP--PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 D+ ++ D++ + W L+ + + +T+ Sbjct: 344 DKKSLRMVDYSKYSRVSKWTLGLQGGGEQIAVIRASGSITRTRSP 388 >gi|307293218|ref|ZP_07573064.1| signal peptide peptidase SppA, 67K type [Sphingobium chlorophenolicum L-1] gi|306881284|gb|EFN12500.1| signal peptide peptidase SppA, 67K type [Sphingobium chlorophenolicum L-1] Length = 633 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 72/272 (26%), Positives = 120/272 (44%), Gaps = 10/272 (3%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPG 77 +H N + + I G I D + + + + + + AL+V + SPG Sbjct: 302 MKAHKPANDGEIGVLTIAGDIVDGEAGPGTAAGDTIAKLLRKALAEKDLKALVVRVDSPG 361 Query: 78 GSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GS A E I AI + K++ PV+ + +AAS GY +S +N+I A ++ GSIGV Sbjct: 362 GSVMASEKIRGAIMEAKSQGLPVVVSMGNVAASGGYWVSTPANMIFAEPDTITGSIGVFG 421 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 P + L K+GV+ VK++P+ +P P+ ++MQ V+ Y FV LV++S Sbjct: 422 ILPSFEGTLAKIGVTTDGVKTTPLSGQPDVAGGTTPEFDRIMQMGVEDIYGRFVGLVAQS 481 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R + ++ GR+W G A+++GL+D GG E+ L + + Sbjct: 482 RRKTPQQIDAIAQGRVWDGGTARQIGLVDRFGGLEDAIAEAAKLAKIDPAKAKPYRIAKE 541 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 F + ED + L Sbjct: 542 PDPFTQFVQSIVDREEEDDAGAPDGAMGRDLL 573 Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 74/206 (35%), Gaps = 9/206 (4%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASA 110 +++ ++ D A++++L G + +A+ V+ K + + + Sbjct: 84 DIVAALDAAKDDKKVKAVVLNLDGFTGGGQVALGRVGKALDAVRAAKKPVFAYATIYSDD 143 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 Y ++ + V G Y K +D+LGV+ + K+ PF+ Sbjct: 144 SYQLAAHATESWVNPLGGVAITGRGGSGLYYKGLIDRLGVNTHVYRVGTYKSFVEPFTRT 203 Query: 171 --NPKAVQMMQDVVDSSYHWFVRLVSESR-NIPYDKTLVLSDGRIW-----TGAEAKKVG 222 +P+A Q Q + D+ + + + V+ +R + G A G Sbjct: 204 GQSPEAKQANQALADALWEDWRQEVATARPKAKLAAYVNDPAGLAQAAGGNLAKAALGAG 263 Query: 223 LIDVVGGQEEVWQSLYALGVDQSIRK 248 LID +G + + + + K Sbjct: 264 LIDKMGDEAAFGARVAEVAGNAPDDK 289 >gi|317152403|ref|YP_004120451.1| signal peptide peptidase SppA, 36K type [Desulfovibrio aespoeensis Aspo-2] gi|316942654|gb|ADU61705.1| signal peptide peptidase SppA, 36K type [Desulfovibrio aespoeensis Aspo-2] Length = 329 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 62/280 (22%), Positives = 122/280 (43%), Gaps = 19/280 (6%) Query: 31 VEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSPG 77 D +A I + G + QEL+ + D +++++ SPG Sbjct: 44 EGDGDGKLALIHLTGFLAAQPRQGMLRSTPSQVQELVSALALAEADTEVKGVVLAIDSPG 103 Query: 78 GSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 G+ A + ++ I K R K V+ + ++AAS GY + ++ I+A T++ GS+GV+ Sbjct: 104 GTTTASDILYHEIADFKQRTGKKVVVAMFDVAASGGYYAALPADWILAHPTTITGSVGVV 163 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 F P + DK+GV ++ KS K SPF P+ + Q ++D F+ LV++ Sbjct: 164 FMRPKLHGLFDKIGVDVEVSKSGEDKDMGSPFRPTTPEEAALFQAIIDDYAARFLALVAK 223 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 R + ++ R++T +A GL+D VG ++ + AL ++ + Sbjct: 224 HRALTPQNMALVRTARVFTANQALAAGLVDQVGYIQDAFARARALSGLADNARVVTYRRE 283 Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKV----QGLWAVW 291 ++ + + ++ + + + G + VW Sbjct: 284 TYPNDNPYNTMTSADPAKASLLGVDASFIMPPRAGFYYVW 323 >gi|118594938|ref|ZP_01552285.1| Peptidase family U7 [Methylophilales bacterium HTCC2181] gi|118440716|gb|EAV47343.1| Peptidase family U7 [Methylophilales bacterium HTCC2181] Length = 318 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 65/275 (23%), Positives = 119/275 (43%), Gaps = 16/275 (5%) Query: 8 IKTRYVMLS-LVTLTVVYFSWSSHVE-DNSPHVARIAIRGQI-----EDSQELIERIERI 60 I +++ L L+ L +++ S A I +RG+I + + ++ + Sbjct: 33 IFFKFLTLGYLIALLLIFVSGGDRGAVSTGEFTALINLRGEIGADQPVNGSDFRISLKEV 92 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCA 117 + ALI+S++SPGGS I IQ+ K + PV V ++ AS Y I+ A Sbjct: 93 YANPGTKALILSINSPGGSPVQSGMINDEIQRYKKKFPEIPVYAVVEDVCASGAYYIAVA 152 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 ++ I + S+VGSIGVL + + LG+ + + + KA PF ++PK Sbjct: 153 ADKIFVDKASIVGSIGVLIDGFGFEKAIATLGIERRLITAGENKAIMDPFLPIDPKQKLH 212 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 + ++ + F+ +V R + G W+G +A ++GL D +G V + Sbjct: 213 IDAMLAEVHQQFINVVKRGRGDRLANNDDIFSGLFWSGEKAIQLGLADDMGDIYSVANEI 272 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 KI D+ +++ K L + + Sbjct: 273 IG------YEKIVDFTSYESFADRFAKQLGMGIGI 301 >gi|125583549|gb|EAZ24480.1| hypothetical protein OsJ_08238 [Oryza sativa Japonica Group] Length = 684 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 130/285 (45%), Gaps = 19/285 (6%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALI 70 W+ ++ +A I G I +++LIE+I + + A+I Sbjct: 369 VSKWTLGLQGGGEQIAVIRASGSITRTRSPLSVPSSGIIAEQLIEKIRTVRESEKYKAVI 428 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + + SPGG A A + ++R I+ + + KPV+ + ++AAS GY ++ A+ +IVA + +L G Sbjct: 429 LRIDSPGGDALASDLMWREIRLLADTKPVVASMSDVAASGGYYMAMAAPVIVAEKLTLTG 488 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP-FSEVNPKAVQMMQDVVDSSYHWF 189 SIGV+ ++ +++ + + + + + P ++ + ++Y F Sbjct: 489 SIGVVTGKFILQKLYERIDFNKEIISKGRYAELNAADQRPLRPDEAELFEKSAQNAYALF 548 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 + SR++ D+ ++ GR+W+G +A GL+D +GG + RK+ Sbjct: 549 RDKAAMSRSMNVDQMETVAQGRVWSGQDAASRGLVDSLGGFSQALAIAKQKANIPHDRKV 608 Query: 250 --KDWNPPKNYWFCDLKNLSISSL-LEDTIPLMKQ--TKVQGLWA 289 + + P L + S L ++ + + Q T + G+ A Sbjct: 609 QLVEISKPSPTLPEILSGIGSSLLGVDRAVKGVLQDVTSLNGVQA 653 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 38/295 (12%), Positives = 101/295 (34%), Gaps = 27/295 (9%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSA 66 + + + V + +RG+I D ++ E + + D Sbjct: 104 LAVKLRMLVAPPWKRVRKGSVLNMKLRGEISDQLKTRFSSGLSLPQICENFVKAAYDPRI 163 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNR----------KPVITEVHEMAASAGYLISC 116 + + + + + I R I K + + Y ++C Sbjct: 164 SGIYLHIEPLRCGWGKVDEIRRHIVDFKKSDDEQVLHDFVGKFVVGYMPVCGEKEYYLAC 223 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKA 174 A + A ++ V G+ Q +++ L+K+G+ + + K+ + ++ + Sbjct: 224 ACGELYAPPSAYVALFGLTVQQTFLRGVLEKVGIEPEIQRIGRYKSAGDQLARKSMSNEV 283 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 +M+ ++D+ Y ++ +S ++ + ++ A K+ G I + +EV Sbjct: 284 REMLATLLDNIYGNWLDTISSKHGKKKEEIEEFINSGVYQVARLKEEGWITDLLYDDEVM 343 Query: 235 QSLYALG--VDQSIRKIKDWNP--PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 L D+ ++ D++ + W L+ + + +T+ Sbjct: 344 AMLKERVAQKDKKSLRMVDYSKYSRVSKWTLGLQGGGEQIAVIRASGSITRTRSP 398 >gi|256829567|ref|YP_003158295.1| signal peptide peptidase SppA, 67K type [Desulfomicrobium baculatum DSM 4028] gi|256578743|gb|ACU89879.1| signal peptide peptidase SppA, 67K type [Desulfomicrobium baculatum DSM 4028] Length = 611 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 59/274 (21%), Positives = 120/274 (43%), Gaps = 12/274 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSL 73 S + + I RG I S+ + E + +D + A+++ L Sbjct: 309 YLAMSPSGQTASKEVIGIIRARGAILPGKQPENMTGSESIAELFQMARQDPTVLAVVLRL 368 Query: 74 SSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 SPGGSA A E I I + + KPV+ + +AAS Y I+ +N IVAA T+L GSI Sbjct: 369 DSPGGSAAASEEIHHEIARTQEAGKPVVVSMGSVAASGAYWIAAGANRIVAAPTTLTGSI 428 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 G+ +P + LG++ + ++P+ +P ++ ++ + + ++ Y F+ Sbjct: 429 GIFAAFPTFEDTAMNLGITTDGIGTTPLADLGNPLRPLSAQSERAIGHLLRFGYDLFIDR 488 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIK 250 V+ R +P + GR++ G EA L+D +G ++ ++ +L + ++++ Sbjct: 489 VASGRRLPAADVENSAQGRVFLGQEALSRKLVDQLGDLDDALKTAASLAGLTVVNSKELR 548 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + + + + + + K + Sbjct: 549 RAPSSHEKLLQTFFSTAQALFTQQSPAISKMLNM 582 Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 38/315 (12%), Positives = 97/315 (30%), Gaps = 42/315 (13%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51 + + L +V + F + V + G + + + Sbjct: 22 RVVVANIFFLLVVIILFGVFFTDTEETLRQNSVLVVNPAGALVEQRNAPKPAEALLRKMG 81 Query: 52 ------------ELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKP 98 ++I+ I + + D + A+++ G I +AI K Sbjct: 82 RETAKADETKTQDIIDAIRKAATDSNILAMVIDPRDLQGCDTTKLLDIGKAILDFKETGK 141 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 + + YL++ ++ I V G Y K LDK ++ + Sbjct: 142 PVLAHSMVYTQGQYLLASYADTISVNPLGGVMITGFGMYQTYFKGLLDKTRINFHVFRVG 201 Query: 159 PMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK----TLVLSDGRI 212 K PF ++ +A + ++ + + ++ S++R + + Sbjct: 202 DYKTAVEPFVRESMSEEAKEAGREWLGGLWQAYLDEASKNRGVSPSDITSYVENIDTRLA 261 Query: 213 WTGAEAKKV----GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 G +A ++ L+D + + Q L + + ++ + S Sbjct: 262 AVGGDAARLAVTAKLVDEIKTSTQFDQLLAGKTGKK-----VEDLNRVDFQDYLAMSPSG 316 Query: 269 SSLLEDTIPLMKQTK 283 + ++ I +++ Sbjct: 317 QTASKEVIGIIRARG 331 >gi|119493252|ref|ZP_01624092.1| protease IV [Lyngbya sp. PCC 8106] gi|119452725|gb|EAW33903.1| protease IV [Lyngbya sp. PCC 8106] Length = 607 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 126/252 (50%), Gaps = 9/252 (3%) Query: 33 DNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAYAG 83 ++ + I G I D + L +++ ++ D A+++ ++SPGGSA A Sbjct: 316 NSKNKIGIIYAEGSIVDGEGVGDQIGGDSLAKKLRKLRMDKEVKAVVLRVNSPGGSATAS 375 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 E I R ++ ++ +KPVI + AAS GY IS A++ I A ++ GSIGV V+ Sbjct: 376 EIIGREVELLQAQKPVIVSMGNFAASGGYWISMAASQIFAESNTITGSIGVFGVLFNVQD 435 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 ++ GV+ V++ + P+ + +Q VVD+ Y F+ VSESR++P K Sbjct: 436 IANENGVTWDVVQTGRYANINTVSRPKTPEELARIQKVVDAIYERFLTKVSESRDLPKSK 495 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ GR+W+G +A+K+GL+D +GG + + + K++++ + + L Sbjct: 496 VAEIAQGRVWSGIQAEKIGLVDQIGGIQAAIAAAAEQAKLEDDWKLEEYPEGETFEQQIL 555 Query: 264 KNLSISSLLEDT 275 + + + Sbjct: 556 ETFIGGESTQAS 567 Score = 82.7 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 94/262 (35%), Gaps = 29/262 (11%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------------------ 51 L+ L + + S + V + I D+ Sbjct: 29 GLIFLVMAAATQDSGPQVKDKSVLVFDLSLNITDADPEYDTSELFQKALAEDSFNQIKLR 88 Query: 52 ELIERIERISRDDSATALIVSLSSPGGS--AYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 ++E +E S+DD L + +S S + +A++K + I Sbjct: 89 TILEGLEEASQDDRIVGLYLKGTSNPTSTGLANSTEVRQALEKFRESGKPIIAYDLDWTE 148 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y ++ +N IV V G+ + ++ +K G+ ++ + K+ PF Sbjct: 149 PEYYLASVANTIVVNPLGSVEMNGLSSEIMFLAGAFEKFGIGVQVTRVGKYKSAVEPFLL 208 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLIDV 226 +++ + + Q ++D + ++ VS SR + + ++DG I EA K L+D Sbjct: 209 KQMSSENREQTQKLLDDIWGKYITTVSPSRQLNASQLQQIADGQGILMAPEAVKSKLVDK 268 Query: 227 VGGQEEVWQSLYALGVDQSIRK 248 V +EV L L + Sbjct: 269 VAHFDEVIVDLKKLTGEPEDED 290 >gi|237744633|ref|ZP_04575114.1| protease IV [Fusobacterium sp. 7_1] gi|229431862|gb|EEO42074.1| protease IV [Fusobacterium sp. 7_1] Length = 551 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 53/237 (22%), Positives = 112/237 (47%), Gaps = 11/237 (4%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70 ++ + +A I + G+I + ++E+++ + + L+ Sbjct: 267 FLEYVSAYKRKKNKSKNTIAIINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLV 326 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + ++SPGGSA E I++ ++K+ P+ + ++ AS GY I+ + A +L G Sbjct: 327 LRINSPGGSALESEKIYQKLKKL--EIPIYVSMGDLCASGGYYIATVGKKLFANPVTLTG 384 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ YP ++KL V+++ FS+++ ++ + + ++ Y F Sbjct: 385 SIGVVVLYPEFTETINKLKVNMEGFSKGKGFDIFDIFSKLSEESKEKIIYSMNEVYSEFK 444 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 V ++RNI + ++ GR+W G++AK+ GL+D +G + SL + + Sbjct: 445 EHVIQARNISEEDLEKIAGGRVWLGSQAKENGLVDELGSLNDCIDSLAKDLELKDFK 501 Score = 70.4 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 54/284 (19%), Positives = 114/284 (40%), Gaps = 12/284 (4%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 F+L K K + + SL + V F+ + VED ++ I+I + + L++ +E + Sbjct: 27 FILGKFKNKDKV-SLKGVKTVVFNLNELVEDYM--ISTISINKTL-SHEALLKALENLVN 82 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D +I+ + S E I +K+ K +I + + A+ I + Sbjct: 83 DKKIEKIIIDVDEVDLSRVHIEEIKEIFEKLSVNKEIIAIGTTFDEYSYQVALLANKIYM 142 Query: 123 AA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQ 179 + S + G ++ PY K L GV++ ++ K E ++++ + + + Sbjct: 143 LNTKQSCLYFRGYEYKEPYFKNILATFGVTVNTLHIGDYKVAGESFSNNKMSEEKKESLI 202 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 ++ ++ + F+ LV E R + K ++ D +A ++GLID + EE Sbjct: 203 NIKETLFQNFINLVKEKRKVDITKEILSGDLIFANSEKAIQLGLIDGLSTYEE-----IG 257 Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 + ++ ++ KN LE I + + Sbjct: 258 IDYNEDTVDFLEYVSAYKRKKNKSKNTIAIINLEGEIDTRESKE 301 >gi|289764414|ref|ZP_06523792.1| protease IV [Fusobacterium sp. D11] gi|289715969|gb|EFD79981.1| protease IV [Fusobacterium sp. D11] Length = 306 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 121/270 (44%), Gaps = 13/270 (4%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70 ++ + +A I + G+I + ++E+++ + + L+ Sbjct: 22 FLEYVSAYKRKKNKSKNTIAIINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLV 81 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + ++SPGGSA E I++ ++K+ P+ + ++ AS GY I+ + A +L G Sbjct: 82 LRINSPGGSALESEKIYQKLKKL--EIPIYVSMGDLCASGGYYIATVGKKLFANPVTLTG 139 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ YP ++KL V+++ FS+++ ++ + + ++ Y F Sbjct: 140 SIGVVVLYPEFTETINKLKVNMEGFSKGKGFDIFDVFSKLSEESKEKIIYSMNEVYSEFK 199 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 V ++RNI + ++ GR+W G++AK+ GL+D +G + SL + + Sbjct: 200 EHVIQARNISEEDLEKIAGGRVWLGSQAKENGLVDELGSLNDCIDSLVKDLELKDFK--L 257 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 + + + + + D I ++ Sbjct: 258 TYIRGRKSMMEIISAMKPQFIKSDIIEKIE 287 >gi|125540982|gb|EAY87377.1| hypothetical protein OsI_08780 [Oryza sativa Indica Group] Length = 684 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 130/285 (45%), Gaps = 19/285 (6%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALI 70 W+ ++ +A I G I +++LIE+I + + A+I Sbjct: 369 VSKWTLGLQGGGEQIAVIRASGSITRTRSPLSVPSSGIIAEQLIEKIRTVRESEKYKAVI 428 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + + SPGG A A + ++R I+ + + KPV+ + ++AAS GY ++ A+ +IVA + +L G Sbjct: 429 LRIDSPGGDALASDLMWREIRLLADTKPVVASMSDVAASGGYYMAMAAPVIVAEKLTLTG 488 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP-FSEVNPKAVQMMQDVVDSSYHWF 189 SIGV+ ++ +++ + + + + + P ++ + ++Y F Sbjct: 489 SIGVVTGKFILQKLYERIDFNKEIISKGRYAELNAADQRPLRPDEAELFEKSAQNAYALF 548 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 + SR++ D+ ++ GR+W+G +A GL+D +GG + RK+ Sbjct: 549 RDKAAMSRSMNVDQMETVAQGRVWSGQDAASRGLVDSLGGFSQALAIAKQKANIPHDRKV 608 Query: 250 --KDWNPPKNYWFCDLKNLSISSL-LEDTIPLMKQ--TKVQGLWA 289 + + P L + S L ++ + + Q T + G+ A Sbjct: 609 QLVEISKPSPTLPEILSGIGSSLLGVDRAVKGVLQDVTSLNGVQA 653 Score = 79.7 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 37/295 (12%), Positives = 100/295 (33%), Gaps = 27/295 (9%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSA 66 + + + V + +RG+I D ++ E + + D Sbjct: 104 LAVKLRMLVAPPWKRVRKGSVLNMKLRGEISDQLKTRFSSGLSLPQICENFVKAAYDPRI 163 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNR----------KPVITEVHEMAASAGYLISC 116 + + + + + I R I K + + Y ++C Sbjct: 164 SGIYLHIEPLRCGWGKVDEIRRHIVDFKKSDDEQVLHDFVGKFVVGYMPVCGEKEYYLAC 223 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKA 174 A + A ++ V G+ Q +++ L+K+G+ + + K+ + ++ + Sbjct: 224 ACGELYAPPSAYVALFGLTVQQTFLRGVLEKVGIEPEIQRIGRYKSAGDQLARKSMSNEV 283 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 +M+ ++D+ Y ++ +S ++ + ++ A K+ G I + +EV Sbjct: 284 REMLATLLDNIYGNWLDTISSKHGKKKEEIEEFINSGVYQVARLKEEGWITDLLYDDEVM 343 Query: 235 QSLYALGVDQSIRKIKDWNPPK----NYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 L + + ++ + K + W L+ + + +T+ Sbjct: 344 AMLKERVGQKDKKSLRMVDYSKYSRVSKWTLGLQGGGEQIAVIRASGSITRTRSP 398 >gi|293568086|ref|ZP_06679423.1| Putative signal peptide peptidase sppA [Enterococcus faecium E1071] gi|291589168|gb|EFF20979.1| Putative signal peptide peptidase sppA [Enterococcus faecium E1071] Length = 341 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 63/255 (24%), Positives = 123/255 (48%), Gaps = 16/255 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSP 76 D++ + ++++ G I + +E+++ I D + + + ++SP Sbjct: 53 EEGDSTQKIVKLSVDGTIAAGGSSGLFASEGYNHKNFMEQLKAIEEDPTVKGIFLEVNSP 112 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG Y I + + ++ P+ + MAAS GY IS ++ I A E ++ GSIGV Sbjct: 113 GGGVYESAEIAKKLDTIRKEHDIPMYVSMKNMAASGGYYISAQADKIFATEETVTGSIGV 172 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + L+KLGV +VKS +K S + ++Q +DS+Y FV +VS Sbjct: 173 IISGLNYSGLLEKLGVEDTTVKSGALKDMGSGTRPETKEEETVLQAYIDSAYSRFVAIVS 232 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 E RN ++ ++DGRI+ G +AK+VGL+D +G E+ +++ + ++ +++ Sbjct: 233 EGRNKSEEEVKKIADGRIYDGVQAKEVGLVDELGFPEDALKAMRKEQQLEDA-ELVEYSS 291 Query: 255 PKNYWFCDLKNLSIS 269 + + ++ Sbjct: 292 APSGFASTWLGSKLA 306 >gi|110833924|ref|YP_692783.1| peptidase [Alcanivorax borkumensis SK2] gi|110647035|emb|CAL16511.1| peptidase [Alcanivorax borkumensis SK2] Length = 326 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 10/228 (4%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIERISRDDSA 66 +V L + + V+ S V HV + + G I QE ++ + R ++ Sbjct: 47 FVYLFTLLVIVIPGKTGSAVTMAEAHVGIVDVNGVIAPDQEASADLIVTGLTRAFEAENT 106 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCASNIIVA 123 TA+++ ++SPGGS ++ AI+++ K + + ++ AS Y I+ A++ I A Sbjct: 107 TAVLLKINSPGGSPVQSNQVYNAIKRLRAEYPEKKLYAAITDVGASGAYFIASAADEIYA 166 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 S+VGSIGV+ ++ DKLGV + + K PFS V P + +Q ++D Sbjct: 167 DPASIVGSIGVIMAGFGLEQAADKLGVERRVFTAGENKDLMDPFSPVKPAHRKHVQTMLD 226 Query: 184 SSYHWFVRLVSESRNIPYDKT--LVLSDGRIWTGAEAKKVGLIDVVGG 229 + F+ V + R L G WTG A +GLID + Sbjct: 227 DIHQQFIAAVKKGRGNRLKVDGHPELFSGLFWTGERAMDLGLIDGLMS 274 >gi|307566027|ref|ZP_07628485.1| signal peptide peptidase SppA, 67K type [Prevotella amnii CRIS 21A-A] gi|307345215|gb|EFN90594.1| signal peptide peptidase SppA, 67K type [Prevotella amnii CRIS 21A-A] Length = 592 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 73/268 (27%), Positives = 130/268 (48%), Gaps = 6/268 (2%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79 + V Y + S +AR G + D+Q++ + + +I+ DD A+++ ++S GGS Sbjct: 306 IAVYYMAGDIVDGTVSNPMAR----GSVIDAQKVCKDLAKIAADDDVKAVVIRVNSGGGS 361 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 AYA E I+ I ++K +KPV+ + MAAS Y +S +N+IVA T+L GSIG+ +P Sbjct: 362 AYASEQIWHYIMELKKKKPVVVSMGGMAASGAYYLSAPANLIVADPTTLTGSIGIFGMFP 421 Query: 140 YVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 L +KLGV V ++ A + + ++++ V Y F V+E R Sbjct: 422 DFSGLLREKLGVKFDEVSTNKHAAFGTISRPFTIEEMRLLSQYVGRGYKLFCNRVAEGRK 481 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + + + ++ G ++TG AK +GL+D +GG + L + +D+ P ++ Sbjct: 482 LSFQQINKIAQGHVYTGEYAKTIGLVDYLGGLDVAISKAANLAKIRDYY-TQDYPEPLSW 540 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + S L+D + Q Sbjct: 541 VEQIFDEDIVGSYLDDKVKAQLGDFYQP 568 Score = 89.7 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 93/262 (35%), Gaps = 26/262 (9%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-------------------- 52 + + ++ ++ S V I + GQ+ D+Q+ Sbjct: 23 IAFFIGSILLMIIGSSHKESVADNSVLTINLTGQMADNQQEDNPLDKFMGNAIKSISLNT 82 Query: 53 LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKN-RKPVITEVHEMAASA 110 ++ ++ D + + S + +A+ + + + Sbjct: 83 FVKGLKIAKEDKKIKGVYLEAGLFQADSYATLQEARKALLDFQKGSGKWVIAYADSYTQQ 142 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169 Y ++ A+ + ++ G+ Q ++K + K GV + K K+ F+E Sbjct: 143 SYYLASAATKVYLNPQGMIDWHGLAAQPLFLKDAMAKFGVKMHVAKVGKYKSATEMFTED 202 Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA--EAKKVGLIDV 226 ++ + + + + V+ V++SRN+ ++ +D I A + K++ L+D Sbjct: 203 KMSEANREQTKAYISGIWGNVVKEVAQSRNLTVEQLNNYADSAITFAAPTDYKRMKLVDG 262 Query: 227 VGGQEEVWQSLYALGVDQSIRK 248 + +++ Q + + + Sbjct: 263 LLYSDQIKQLVKKKMGVEDDLQ 284 >gi|205374508|ref|ZP_03227304.1| signal peptide peptidase [Bacillus coahuilensis m4-4] Length = 336 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 65/284 (22%), Positives = 129/284 (45%), Gaps = 25/284 (8%) Query: 30 HVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSS 75 S +A + + G I+D+ ++ ++++E I D + +++ ++S Sbjct: 54 EKGSASKRIAVLEVNGVIQDTGDVASFFESPTYNHRQFMDQLEVIKEDKTIQGVVLRVNS 113 Query: 76 PGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 PGG I + + ++ + PV + +AAS GY IS ++ I A +L GS+G Sbjct: 114 PGGGTAESAQIHQKLVELKEEAEIPVYVSMGSIAASGGYYISAPADKIFAMGETLTGSLG 173 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V+ Q ++ GV + ++KS P K SP EV + ++Q ++D+SY FV ++ Sbjct: 174 VIMQSLNYSGLAEEYGVEMVTIKSGPYKDILSPTREVTEEERNILQSMIDNSYEAFVDVI 233 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 + R++ + ++DGRI+ G +AK+ LID G E+ ++L + + Sbjct: 234 ATGRDMSEAEVKRIADGRIYDGYQAKENNLIDEFGYYEDALEALKKDHDLNGAQV---FE 290 Query: 254 PPKNYWFCDLKNLSISSLLED------TIPLMKQTKVQGLWAVW 291 F L + S S+ + + ++ L ++ Sbjct: 291 YSTGMGFESLFSYSAQSVFGKDMESRMLMDFLSKSSGPRLMYLY 334 >gi|256026400|ref|ZP_05440234.1| protease IV [Fusobacterium sp. D11] Length = 334 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 121/270 (44%), Gaps = 13/270 (4%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALI 70 ++ + +A I + G+I + ++E+++ + + L+ Sbjct: 50 FLEYVSAYKRKKNKSKNTIAIINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLV 109 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + ++SPGGSA E I++ ++K+ P+ + ++ AS GY I+ + A +L G Sbjct: 110 LRINSPGGSALESEKIYQKLKKL--EIPIYVSMGDLCASGGYYIATVGKKLFANPVTLTG 167 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ YP ++KL V+++ FS+++ ++ + + ++ Y F Sbjct: 168 SIGVVVLYPEFTETINKLKVNMEGFSKGKGFDIFDVFSKLSEESKEKIIYSMNEVYSEFK 227 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 V ++RNI + ++ GR+W G++AK+ GL+D +G + SL + + Sbjct: 228 EHVIQARNISEEDLEKIAGGRVWLGSQAKENGLVDELGSLNDCIDSLVKDLELKDFK--L 285 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 + + + + + D I ++ Sbjct: 286 TYIRGRKSMMEIISAMKPQFIKSDIIEKIE 315 >gi|71892212|ref|YP_277945.1| protease IV [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796318|gb|AAZ41069.1| protease IV [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 625 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 11/225 (4%) Query: 32 EDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A I I G I D + +I D A+++ ++SPGGS A Sbjct: 329 AKKDNQIAIICINGPIVDGPDIPGSIGGDTIAHKIRSARFDPKIKAIVLRVNSPGGSVNA 388 Query: 83 GEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 E I + V+ + KPV+ + +AAS GY IS +N+I+A+ +++ GSIG+ Sbjct: 389 SELIRLELIAVRDSGKPVVVSMGGIAASGGYWISTPANVIIASNSTITGSIGIFGIINTF 448 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + LD +G+ V +SP+ + S + + + + MMQ V++SYH+F+ V+ESR Sbjct: 449 EKSLDTIGIHSDGVNTSPI-SNISITTPLPTEYINMMQLYVNTSYHYFINTVAESRCKTT 507 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + ++ G +W G +A K GLID +G ++ L + Sbjct: 508 EDIHKIAQGHVWLGYDAIKNGLIDNIGDLDDAINKAIELAHLKEY 552 Score = 75.0 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 79/205 (38%), Gaps = 11/205 (5%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASA 110 ++I + + D T LI+SL + GS E I +A+++ K I + + + Sbjct: 106 DIINILRQAKNDPHITGLILSLKNFCGSNQTSLEYIGKALREFKESGKPIYAISDYYNQS 165 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168 YL++ +N I V G+ Y K L+ L ++ + K+ PF Sbjct: 166 QYLLASYANKIYLTPHGFVDLRGISTSKLYYKSLLNNLKINTHIFRVGRYKSAVEPFIQD 225 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY--------DKTLVLSDGRIWTGAEAKK 220 +++ +V+ + +++++S +RN + L + T A A K Sbjct: 226 QMSDHVRHEETKLVNRLWDQYLQIISINRNTTTRSIFPGINNILNELHRMQGDTAAYALK 285 Query: 221 VGLIDVVGGQEEVWQSLYALGVDQS 245 ID + + ++ + Sbjct: 286 NKWIDEIASHFVIENTMKEIFGSNK 310 >gi|328949857|ref|YP_004367192.1| signal peptide peptidase SppA, 36K type [Marinithermus hydrothermalis DSM 14884] gi|328450181|gb|AEB11082.1| signal peptide peptidase SppA, 36K type [Marinithermus hydrothermalis DSM 14884] Length = 544 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 65/279 (23%), Positives = 119/279 (42%), Gaps = 21/279 (7%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIE-------------------DSQELIERIERISRDDS 65 F ++ VA + + G I S+ L+ + D Sbjct: 258 FLPPKLRVFSARRVAVVPLVGAIVTGPSRRVPLPLPILGGDQAGSESLLRALRLAEADPK 317 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 A+++ + SPGGSA A + I R + ++K KPV+ + +AAS GY ++C + IVAA Sbjct: 318 TAAIVLYVDSPGGSALASDLILREVARIKKTKPVVAVLGPVAASGGYYVACQATRIVAAP 377 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 T+L GSIGV+ + ++ F + G++ +++ + + ++Q ++ Sbjct: 378 TTLTGSIGVVTLFGILEEFNHRYGLNPEAITLGRFAELGTSRRAPTEEERALIQRYIEEV 437 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y FV V E R + + + GR+W G +A ++GL+D +G E L Sbjct: 438 YARFVARVVEGRGLEPARVDEIGRGRVWAGQDALELGLVDELGDVERGLALARELADLPP 497 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + PK + S+ L+ PL+ + + Sbjct: 498 DAPAWNVPMPKPLILP--RPDQPSAFLKVLAPLLAERAL 534 Score = 80.0 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 82/188 (43%), Gaps = 2/188 (1%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 ++L E+++ +++ +++ + A+ A+Q++++ + Sbjct: 60 EQLTEKLQALAQAPWVEGVVLRIEGLRAPYGTVFALREAVQRLRDAGKQTLAYLTRVDFS 119 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK--SVKSSPMKAEPSPFS 168 Y ++ A+ I E++ +G+ +VK FLD+ G+ + +++ + S Sbjct: 120 SYYLASAAQTIAVPESAEFSLLGLKLSVTFVKDFLDRYGIRFEKQAIREYKSAGDNLVHS 179 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 ++ + +++ + F + V+E+R + D I + EA+ GL+D V Sbjct: 180 RMSEANREQYTTLLERFFEVFAQAVAEARGVDPQTVRDWIDAGITSAKEAQARGLVDRVA 239 Query: 229 GQEEVWQS 236 ++E+ Q Sbjct: 240 YEDELIQK 247 >gi|288553729|ref|YP_003425664.1| proteinase IV [Bacillus pseudofirmus OF4] gi|288544889|gb|ADC48772.1| proteinase IV [Bacillus pseudofirmus OF4] Length = 331 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 67/281 (23%), Positives = 126/281 (44%), Gaps = 18/281 (6%) Query: 29 SHVEDNSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLS 74 +D + + + G I+D+ Q + +IE ++D S +I+ ++ Sbjct: 49 EQGDDFGNSIVVLELNGVIQDTGDAVSIFDAQGYRHQAFLSQIEHAAKDSSVQGVIIRVN 108 Query: 75 SPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 +PGG I I +V+ KPV + MAAS GY I+ ++ IVA+ ++ GS+ Sbjct: 109 TPGGGVVESAEIHEKIVEVQEEYNKPVYISMGSMAASGGYYIAAPADKIVASPQTITGSL 168 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GV+ + + + G+ ++KS K S E+ ++Q ++D SY FVR+ Sbjct: 169 GVIMESINIAELAENYGIKFNTIKSGEYKDIMSATREMTEGDRAILQSLIDESYDEFVRI 228 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 +SE RN+ + L+DGRI+TG +A ++ L+D +G ++ + + Sbjct: 229 ISEGRNMSESEVRQLADGRIYTGNQALEIDLVDELGSLDDTIAMMREDLGANYSVIKYEA 288 Query: 253 NPPKNYWFCDLKNLSISSL--LEDTIPLMKQTKVQGLWAVW 291 + F +SS L L+ + + L ++ Sbjct: 289 DTGLYSLFSMTAAKMLSSNNELASIEQLITERRAPTLKYLY 329 >gi|319940786|ref|ZP_08015125.1| hypothetical protein HMPREF9464_00344 [Sutterella wadsworthensis 3_1_45B] gi|319805668|gb|EFW02449.1| hypothetical protein HMPREF9464_00344 [Sutterella wadsworthensis 3_1_45B] Length = 602 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 77/265 (29%), Positives = 123/265 (46%), Gaps = 9/265 (3%) Query: 18 VTLTVVYFSWSSHVEDNSPH-VARIAIRGQI-------EDSQELIERIERISRDDSATAL 69 V + P VA + G I D++EL++RIER + S AL Sbjct: 297 VNFGAYLAETARSRSAAQPGAVAVVLAEGAISSTGATGIDAEELVQRIERAASAPSTKAL 356 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSL 128 ++ +SSPGG A A EAI + V+ + PVI + AAS GY IS A++ IVA +L Sbjct: 357 VLRISSPGGDALAAEAIREKLAAVRTKGLPVIVSMGNAAASGGYWISLAADRIVADPLTL 416 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIGV P L+KL + I ++S SP + N +++ V +Y Sbjct: 417 TGSIGVFSIVPDAAAALEKLELGIGGFRTSDFADFGSPLHKPNAAEAALLRAGVMRTYAR 476 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 F L ++SR + L+ GRIW G +A + GL+D +G + + + ++ Sbjct: 477 FKDLTAQSRKKTPEAVEALAQGRIWMGTQAAQNGLVDKLGDLNDAVKLARQVAGLKTNEP 536 Query: 249 IKDWNPPKNYWFCDLKNLSISSLLE 273 I+ ++ + L L ++L+ Sbjct: 537 IRIYDVEADAMTSMLSGLMGEAMLK 561 Score = 65.4 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 41/327 (12%), Positives = 95/327 (29%), Gaps = 41/327 (12%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP-HVARIAIRGQIEDSQ-------- 51 ++F + + + LV +++ + P + + + G + +S Sbjct: 11 LDFCRRLVLNLIFLGVLVAAALIWLFARPNTPAVEPGTLLVLDLDGAVVESDPLRSISAD 70 Query: 52 ---------------ELIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVK- 94 ++ E + D+ +I+ + + I AI+ K Sbjct: 71 LKSLMKSRGASTRLIDVTEALRFAGSDERIAGVIIKVDGLTKLGLASARTIGSAIEDYKT 130 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + A Y + ++++ V G+ Y FL+KLG+ + Sbjct: 131 ASGKPVFSWASGYTQAQYAAAAHADVVALHPMGSVMVKGLSGTTLYWGGFLEKLGIGVSV 190 Query: 155 VKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 K+ K+ P + + + + ++ F + ++R + G Sbjct: 191 FKAGAFKSAPEAYSLRAPTTDNLIAQEGYLSEAWKVFASDLEDARGLIPGSVDTYLKGLP 250 Query: 213 W-------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK------DWNPPKNYW 259 AK GLI + +E ++L +++ +K Sbjct: 251 ERLNAGESPAEAAKAAGLITDLMAREAFDETLAKQFGGGNLKNVKTVNFGAYLAETARSR 310 Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQG 286 L E I T + Sbjct: 311 SAAQPGAVAVVLAEGAISSTGATGIDA 337 >gi|183220418|ref|YP_001838414.1| signal peptide peptidase SppA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910532|ref|YP_001962087.1| periplasmic serine protease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775208|gb|ABZ93509.1| Periplasmic serine protease (ClpP class) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778840|gb|ABZ97138.1| Signal peptide peptidase SppA, S49 family [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 332 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 73/286 (25%), Positives = 128/286 (44%), Gaps = 26/286 (9%) Query: 31 VEDNSPHVARIAIRGQIED----------SQELI----ERIERISRDDSATALIVSLSSP 76 + + I+I G I D S ++ E ++R RD +I+ ++SP Sbjct: 46 AGKDQEKIVIISIEGMISDEGKEAFFGPSSDSMVVRVKESLKRAERDPDVKGVILKINSP 105 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG--YLISCASNIIVAAETSLVGSIGV 134 GG+ A + I++ I+K K RK + M +A Y I+ A++ I A T++ GS+GV Sbjct: 106 GGTVTASDIIYQEIKKFKERKGIPVFAGFMDTAASGAYYIAMATDSIGAHPTTVTGSVGV 165 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + VK LDK+G+ +S S P KA SP +E+ + +++Q ++DS Y F +V Sbjct: 166 IMSGINVKEGLDKIGIKDQSFTSGPNKALGSPTTEMTAEQRKILQSIIDSLYSRFFEVVK 225 Query: 195 ESR-NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA----LGVDQSIRKI 249 + R + + + DGRI+T +A+K G+ID +G + L G Q +I Sbjct: 226 KGRPKVSEARLKEICDGRIFTAEQAQKEGMIDFIGYFDNFVIELMKHPKYEGNPQGSPRI 285 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG----LWAVW 291 + K + + + + + G +W Sbjct: 286 VTYQRGKVPVENIYQATDVKGN-PISFGIADKLLGTGTNAKFLYLW 330 >gi|310821606|ref|YP_003953964.1| Signal peptide peptidase SppA [Stigmatella aurantiaca DW4/3-1] gi|309394678|gb|ADO72137.1| Signal peptide peptidase SppA [Stigmatella aurantiaca DW4/3-1] Length = 578 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 14/226 (6%) Query: 36 PHVARIAIRGQIE--------------DSQELIERIERISRDDSATALIVSLSSPGGSAY 81 P + I++ G I S +++ + RD A A+++ ++SPGGSA Sbjct: 303 PKLGLISLSGMIVPGRGSSGPIGPKTAGSDAVVKAVRAAGRDKRAKAVVLYINSPGGSAL 362 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 A E I AIQ+V +KPVI V ++AAS GY+ + + I ++ ++VGSIGV Sbjct: 363 ASELILEAIQRVARKKPVIAYVDQVAASGGYMAALGAQEIWSSPHAVVGSIGVFAGKFEA 422 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + LG+ + S P ++ V+ +Y F+ V+++R Sbjct: 423 SGLMAHLGIHRTLLTRGENAGIFSVSRGFTPHERASLEAEVEETYQAFLAHVAKARRRTT 482 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 ++ +GR+++G GL+D VG EE + ++ R Sbjct: 483 EEIHARGEGRVYSGTRGLAAGLVDRVGSFEEACRYALERAGVKTER 528 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 74/194 (38%), Gaps = 2/194 (1%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 + + E + +++D +++ L S+ + + + + ++ + Sbjct: 67 TVSSLESFREALGLLAKDPRVQGILLELEGLAVSSAKKDELVKQLMAFRSAGKRVVGWAV 126 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP- 164 + G+ + CA++ ++ A V +G + + L ++G+ V+ K P Sbjct: 127 SVDNLGFQVLCAADEVLLAPAGRVDLVGYAAEATALGEGLARVGIQAHFVRRGAYKTAPE 186 Query: 165 -SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 V+ Q ++ +D Y V ++ R ++ L D ++ A GL Sbjct: 187 LFTHERVSDIQQQTLEAFLDERYAELVNAIAGGRKRSPEEARALIDAGPYSAQRAVAAGL 246 Query: 224 IDVVGGQEEVWQSL 237 +D + + E+ L Sbjct: 247 VDALCSEAELPARL 260 >gi|254432478|ref|ZP_05046181.1| signal peptide peptidase SppA, 36K type [Cyanobium sp. PCC 7001] gi|197626931|gb|EDY39490.1| signal peptide peptidase SppA, 36K type [Cyanobium sp. PCC 7001] Length = 270 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 69/259 (26%), Positives = 126/259 (48%), Gaps = 6/259 (2%) Query: 39 ARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 ARIAI G I +++ + ++ + + AL++ + SPGG+ + I A+ +++ + Sbjct: 14 ARIAIEGPIGGGTRTRVLKALRQVEQRE-CPALLLRIDSPGGTVGDSQEIHAALMRLRQK 72 Query: 97 K-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 V+ ++AS G I A+ IVA S+ GSIGV+ + + L+++GVS ++V Sbjct: 73 GCRVVASFGNISASGGVYIGVAAEKIVANPGSITGSIGVILRGNNLSKLLERIGVSFETV 132 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215 KS K SP + ++Q ++DSSY FV V+E R + + +DGR+++G Sbjct: 133 KSGLYKDILSPDRALTEAERGLLQSLIDSSYGQFVAAVAEGRGLEEEAVRSFADGRVFSG 192 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSISSLLED 274 A+A ++GL+D +G +E + L + + P + + S + Sbjct: 193 AQALELGLVDSLGDEEAARRLAAELAGLDVEKTRPITFGAPPRRFAGLIPGRSQLRAVLQ 252 Query: 275 TIPLMKQTKVQGLWAVWNP 293 L Q LW ++ P Sbjct: 253 LFSLELGWGGQPLW-LYRP 270 >gi|256827350|ref|YP_003151309.1| signal peptide peptidase SppA, 36K type [Cryptobacterium curtum DSM 15641] gi|256583493|gb|ACU94627.1| signal peptide peptidase SppA, 36K type [Cryptobacterium curtum DSM 15641] Length = 376 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 65/268 (24%), Positives = 114/268 (42%), Gaps = 19/268 (7%) Query: 6 KKIKTRYVMLSLVTLT-------------VVYFSWSSHVEDNSPHVARIAIRGQIE---- 48 KK R + LS+V L ++ + VA I + G I Sbjct: 68 KKHTGRIIALSIVALLALTVFLMGSCVNTLIGAAREGAEHAQPNSVAVITMSGTIGYNGT 127 Query: 49 --DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 + L E ++ D + A+++ ++S GG+A AGE + ++ K KP++ + Sbjct: 128 SCSPEGLKELLDEAQADPNIKAVVLRVNSGGGTATAGEEMASYVRDFKASKPIVVSSAAI 187 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 SA Y IS ++ I A+++ +GSIG + Q + LGV+I ++ S+ K Sbjct: 188 NCSAAYEISSQADRIFVAKSTEIGSIGTVMQSIDYSGLMKLLGVNIDNIASAESKDSSYG 247 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 + + QD+VD F V++ R++ ++ L+ G +TG A GL D Sbjct: 248 SRPLTDEERAYYQDLVDQINAVFTDNVAQGRHLSAEEVSQLATGLPFTGVTAVNNGLADE 307 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNP 254 +G E+ + +L S K P Sbjct: 308 IGTLEDALDAAASLAGLDSYSKTTLELP 335 >gi|307110504|gb|EFN58740.1| hypothetical protein CHLNCDRAFT_34059 [Chlorella variabilis] Length = 610 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 5/217 (2%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI-QKVKNRKPVITEVHEMAASAG 111 +I+ + +D + A ++ + SPGGSA A EAI R + V KPV+ + +AAS G Sbjct: 323 VIKALRAARQDPAVKACVLRVDSPGGSAAASEAIHREVSLVVGAGKPVVVSMGNVAASGG 382 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ IVA +L GSIGVL L + GVS++ V A SP + Sbjct: 383 YYIATAASKIVAQPGTLTGSIGVLAGKLVCDAALREYGVSVEVVTVGRSAAAMSPLTPFT 442 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + +++ +D++Y F + V+E R + + L+ GR+WTG +A + GL+D +GG + Sbjct: 443 RHQRRRVEEFMDATYALFKQRVAEGRGLKPEAVAKLAKGRVWTGEQAVEAGLVDQLGGLQ 502 Query: 232 EVWQSLYALGVDQSIRKIKD----WNPPKNYWFCDLK 264 + + + K+ LK Sbjct: 503 AAVELAKREAGLPLEEGAVELRQAYPEKKSRLAAALK 539 Score = 41.1 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 33/248 (13%), Positives = 73/248 (29%), Gaps = 13/248 (5%) Query: 56 RIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNR---------KPVITEVHE 105 + D L+ L G + + A+ + Sbjct: 74 ALRAAGGDPRVKGLLALLGGQTGMGLAQVQELRDAVADFRQAAAGRAPTVAYADAFGEGG 133 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 +A + ++ A +++ LV G+ P+ + LD+ + K+ + Sbjct: 134 AGGTAAFYLASAFDVVAVQPGGLVSVTGLAAATPFARGLLDRWRIVPVFFAREEYKSAAN 193 Query: 166 P--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 + + + D + S VR ++ R + ++ DG AEA + L Sbjct: 194 FLRYRGSTRAEREALGDRLASLGAQVVRGIAAGRGLSEEQVRRAIDGAPHLAAEAAALRL 253 Query: 224 IDVVGGQEEVWQSLYAL-GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282 ID +++ + + L R D L + T P + Sbjct: 254 IDAPLHRDQARKLVSRLREGMAPARPPSDSIAAARAALTALATGQPAEAPSRTSPPLGGA 313 Query: 283 KVQGLWAV 290 + ++ Sbjct: 314 SPDAIASL 321 >gi|313157546|gb|EFR56964.1| signal peptide peptidase SppA, 67K type [Alistipes sp. HGB5] Length = 619 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 68/263 (25%), Positives = 117/263 (44%), Gaps = 10/263 (3%) Query: 17 LVTLTVVYFSWSSHVED-NSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSA 66 +TL + +++ ++ VA + G I D + L + + D+ Sbjct: 317 FITLGEYASQVGADLKNISADQVAVVYADGAIVDGEGFGKEIYGNTLAATLAGVRDDEKV 376 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 A+++ ++SPGGSA A + I+R ++ +K KPV+ + AAS GY ISC +++IVA + Sbjct: 377 KAVVLRVNSPGGSALASDVIWREMELLKAEKPVVVSMGSYAASGGYYISCPADVIVADKL 436 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 +L GSIGV Y S A S + + VD Y Sbjct: 437 TLTGSIGVFGMYLNTIDAFKNKLGITFDAVKSNTSAGMGATSPLTAAERASIMRGVDKVY 496 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 F V+E RN+P +K L ++ GR+W+G +A +GLID GG + Sbjct: 497 TTFTTHVAEGRNLPVEKVLDIAGGRVWSGEDALGIGLIDTYGGLKTAIAIAVDKAGLGDS 556 Query: 247 RKIKDWNPPKNYWFCDLKNLSIS 269 ++ + + + +L++S Sbjct: 557 YRVTEVIEEPTGFAAFIASLNVS 579 Score = 97.0 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 51/324 (15%), Positives = 108/324 (33%), Gaps = 38/324 (11%) Query: 1 MEFVLKKIKT--RYVMLSLVTLTVVYFSWSSHVEDNSPHVAR-------IAIRGQIEDS- 50 M F+ + +V+ S + + F VA I + D+ Sbjct: 28 MNFIKTFLAAILAFVVGSFLVFFLWIFILLGIAGSMEKTVAVHAESILKIDFSDVLTDAP 87 Query: 51 ----------------QEL-----IERIERISRDDSATALIVSLSSPGG--SAYAGEAIF 87 ++L + +E D + + ++ GG A E + Sbjct: 88 SSDPFAGIDFATLRSTRQLPLMKALRALEAAKDDSRIKGIYLRMNGNGGVMGAALLEELR 147 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 A+ K + E + Y ++ A++ I + G+ F + K LDK Sbjct: 148 EAVVDFKQSGKFVVAYDETYSQGKYYLASAADKIYMQPEGAMDWSGLAFNLMFYKGLLDK 207 Query: 148 LGVSIKSVK----SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L + + + EP +++ + MQ +V+S ++ V+E+R I + Sbjct: 208 LDIKAEVFRPTACKYKSAVEPYILPKMSDANREQMQALVNSMWNTIAGSVAEARGIDLKE 267 Query: 204 TLVLSDG-RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 ++D + +A + G +D + ++++ LGV ++ Y Sbjct: 268 LNRITDKLEVSLPEDALEHGFVDSLIYEDQMKDIFAELGVASDSDGEYNFITLGEYASQV 327 Query: 263 LKNLSISSLLEDTIPLMKQTKVQG 286 +L S + + V G Sbjct: 328 GADLKNISADQVAVVYADGAIVDG 351 >gi|223041851|ref|ZP_03612039.1| protease 4 [Actinobacillus minor 202] gi|223017344|gb|EEF15767.1| protease 4 [Actinobacillus minor 202] Length = 622 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 70/271 (25%), Positives = 127/271 (46%), Gaps = 15/271 (5%) Query: 33 DNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 + +A I I G+I + LI +++R+ +D S L++ ++SPGGSA A Sbjct: 323 KAANKIAVINIEGEITMGESLEDTAGTDTLIRQLQRVRQDKSVQGLVLRINSPGGSALAS 382 Query: 84 EAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + ++ ++ PV++ + MAAS GY I+ S+ IVA +L GSIG+ + Sbjct: 383 ELIRQEVEAIQQAGIPVVSSMGGMAASGGYWIAATSDAIVADPNTLTGSIGIFGVLFNFE 442 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LGV + +SP+ ++ + +++Q V+ Y F+ LVS R + Sbjct: 443 KTAQNLGVREDGISTSPLAEISGL-KPLSSQQSELIQMSVEQGYREFLDLVSRGRKMDLA 501 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL----GVDQSIRKIKDWNPPKNY 258 K ++ G++W G +A+ +GL+D +G ++ L L +Q+ +++ + P Sbjct: 502 KVDQIAQGQVWLGQKAQSLGLVDQLGNFDDTLALLGNLINRKLKEQNKPEVETFTPQWFT 561 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 D IS L L + + A Sbjct: 562 EQDDSLFGEISRSLNAKAKLNLASWLNLPLA 592 >gi|323488441|ref|ZP_08093688.1| signal peptide peptidase SppA, 36K type [Planococcus donghaensis MPA1U2] gi|323397948|gb|EGA90747.1| signal peptide peptidase SppA, 36K type [Planococcus donghaensis MPA1U2] Length = 337 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 66/266 (24%), Positives = 129/266 (48%), Gaps = 19/266 (7%) Query: 35 SPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSPGGSA 80 + VA + + G I+D+ + +E++E I D S A++++++SPGG Sbjct: 59 NNRVAVLNVDGVIQDTGDAASFFGTTGYNHSFFMEQLENIKEDASVKAVVLAVNSPGGGV 118 Query: 81 YAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 I+ I +++ KP + +AAS GY I+ + I E +L GSIGV+ Q Sbjct: 119 VESAEIYDKITEIQEETGKPFYVSMGAIAASGGYYIAAPAEKIFVNEETLTGSIGVIMQS 178 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 ++ GV ++KS P K SP ++ ++Q+++D SY FV ++ E R+ Sbjct: 179 VNYGELAERYGVDFVTIKSGPYKDIMSPTRDMTEDERALLQEMLDDSYESFVDVIEEGRS 238 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + ++ ++DGRI G +A +V L D G +E+V + + D + + + + Sbjct: 239 MTEEEVKAVADGRIMNGRQAVEVNLADDFGFEEDVIEQIKT---DFDLGNAEVFQYGNDQ 295 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKV 284 + L ++ ++S + + +K+ Sbjct: 296 GWGSLLSMKVNSFFGNDLETQMISKL 321 >gi|161831390|ref|YP_001595988.1| signal peptide peptidase SppA, 36K type [Coxiella burnetii RSA 331] gi|161763257|gb|ABX78899.1| signal peptide peptidase SppA, 36K type [Coxiella burnetii RSA 331] Length = 313 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 61/293 (20%), Positives = 119/293 (40%), Gaps = 18/293 (6%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWS-SHVEDNSPHVARIAIRGQIEDSQEL-----IERIE 58 ++ +++L L S + +V+ + + G I + + + Sbjct: 27 VRFAGWMFILLLFAILIFAPSSSELEARRSDGAYVSLVRMNGTIMSNTTFSALRVVPELR 86 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISC 116 + D ++ +++ ++SPGGS I I ++K + K V+ + AS YL+S Sbjct: 87 KAFADKNSKGVVLLINSPGGSPVQASIIRDKIIELKKQYHKKVVVVGEDELASGAYLVST 146 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 ++ I +L GSIGV+ L K+GV+ + + K PF V P+ V+ Sbjct: 147 GADKIYVNNDTLTGSIGVIMGGFGFVDTLKKVGVTRRLFVAGDHKDRLDPFQPVKPEDVE 206 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 + V+ + F+ V + R + G WTG EA ++G++D V + Sbjct: 207 KINKVLAQVHQNFIDQVIQGRGNRLHGDRQEIFSGDFWTGKEAAQLGVVDGTANLWTVLE 266 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS---LLEDTIPLMKQTKVQ 285 + ++ KD+ ++ N + L +T PL +Q +V Sbjct: 267 R------EFGVKDYKDYTTRVSFLQALFHNTATELYFHLTNETSPLREQMQVD 313 >gi|291288840|ref|YP_003505656.1| signal peptide peptidase SppA, 36K type [Denitrovibrio acetiphilus DSM 12809] gi|290886000|gb|ADD69700.1| signal peptide peptidase SppA, 36K type [Denitrovibrio acetiphilus DSM 12809] Length = 288 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 71/268 (26%), Positives = 137/268 (51%), Gaps = 10/268 (3%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 S S +A + + G I D+++L ++++++ ++ +I+ ++SPGG + Sbjct: 29 SGEGEDVIMSNSIAVLRLEGVIIDTKDLDKKLKKLDANEKVKGIILEINSPGGVIAPTQV 88 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+ I K+ +KPV + +AAS GY I+ A++ + A E++ GSIGV+ QY V+ + Sbjct: 89 IYNRIMKM--KKPVYAVMESVAASGGYYIAVAADEVYALESTTTGSIGVIMQYSNVEELM 146 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+G+ KS +K PSP +++ + MQ ++ Y F+R V + R+I DK Sbjct: 147 SKIGIKSVVFKSGKLKDVPSPTRDLSYSEKEYMQAMISEFYEQFLRDVLKRRSISEDKLR 206 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L+DGR+++G +A ++ LID +G +EE + Q + + ++ ++ Sbjct: 207 DLADGRVFSGRQAVELKLIDKIGTREEAVVDMKNELGIQDLEVKELYDKDESLLSQLFTK 266 Query: 266 LSISSLLEDTIPLMKQTKVQGLWAVWNP 293 + L + IP G + ++ P Sbjct: 267 --AAVLRSELIP------NGGFYYIYKP 286 >gi|56552823|ref|YP_163662.1| signal peptide peptidase SppA, 67K type [Zymomonas mobilis subsp. mobilis ZM4] gi|56544397|gb|AAV90551.1| signal peptide peptidase SppA, 67K type [Zymomonas mobilis subsp. mobilis ZM4] Length = 637 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 74/272 (27%), Positives = 128/272 (47%), Gaps = 11/272 (4%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSA 66 S +++ F ++ + + + G+I D + + + Sbjct: 297 SFKAVSLASFIGANPPSSAGSAIGVVTVSGEIVDDETRSGQVSGSTISSLLLDTLAKGDI 356 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAE 125 AL+V + SPGGS A E + AI K + PVI + +AAS GY IS ++ I A Sbjct: 357 KALVVRVDSPGGSVSAAEQMRSAILAAKAKGLPVIVSMGSVAASGGYWISTPADKIFADP 416 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 +++ GSIGV P + L K+G+S VK++P+ +P F P+ Q+MQ VD+ Sbjct: 417 STITGSIGVFSLIPTFQQTLHKIGLSADGVKTTPLSGQPDVFRGTTPEFDQLMQFGVDTV 476 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y F +V+ SR++P +K +++GR+W+G +AKK+GL+D G ++ Sbjct: 477 YDRFTSIVASSRHLPLEKVREIAEGRVWSGVDAKKIGLVDQYGFLQDAVTEAAKRAHLDP 536 Query: 246 I-RKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 ++ + ++ LKNL + I Sbjct: 537 SHTHMQFIDEEPSFVEMILKNLFQHQASDAKI 568 Score = 70.0 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 95/282 (33%), Gaps = 39/282 (13%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSH----------VEDNSPHVARIAIRG--------- 45 +K + +++ V ++ + I G Sbjct: 14 IKDVLALILLVLFFGAIFVGLCLTTKNGAISSRNLGAASAADGALLIDFSGNLVEKTEGT 73 Query: 46 ----QIEDS--------QELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQK 92 I+D+ +E++ +E+ +R+ A+++ GG A A+ A+ K Sbjct: 74 SFLDLIQDNNNQNEILLREVVYGLEQAARNPKIKAVVLDLSDFSGGGRAAISAVDNALDK 133 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 V+ + A Y I+ I V +GV Y K LDKLGV Sbjct: 134 VRAAGKPVLSFAGFYNDARYRIAAHGTEIWLPNLGEVALLGVGGNQLYYKGLLDKLGVET 193 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 K + K+ PF +E +P A Q + +S + ++ ++ +R + L+ Sbjct: 194 KIYRVGRFKSFVEPFTRTEQSPDAKAANQALANSLWQTTLQDIAHARPKAHVAEWALNPT 253 Query: 211 RIW-----TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 A+ G+ID +G + + +L Sbjct: 254 SFLKSGHSFAELAQSAGMIDHIGNAIDFGNRVASLVGKDKQP 295 >gi|327439223|dbj|BAK15588.1| periplasmic serine protease [Solibacillus silvestris StLB046] Length = 336 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 65/304 (21%), Positives = 131/304 (43%), Gaps = 37/304 (12%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN---------------------SPHVARIA 42 V+ I ++ + + + + + + + +A + Sbjct: 6 VVALIIAAVLLFFSIGINTIISIFKTDFFTSIDNLMGTESLTYESVVETGDLTNRIAHLT 65 Query: 43 IRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 + G I+D E +E+++ + DD+ +++S+++PGG E I++ Sbjct: 66 VDGVIQDVGEPSIWETVDYNHQLFMEQLDAVLEDDTIKGVVLSVNTPGGGVIESEEIYQK 125 Query: 90 IQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + K+K K + + MAAS GY IS ++ I A ++ GSIGV+ Q + Sbjct: 126 LLKIKEEKQIPIYVSMGSMAASGGYYISAPADKIFAQRETITGSIGVIMQSINYGKLAEN 185 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 GV +++KS K + + M+Q+++D SY FV ++ RN+ + + Sbjct: 186 FGVEFETIKSGEHKDMFGGVRPSTKEELAMLQEMIDESYEHFVDIIEAGRNMSEAQVKKV 245 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 +DGR+ G +A + GL+D +G +E +L A + ++ ++ + W L Sbjct: 246 ADGRVLGGTQALRAGLVDEIGNEEATVNALRADFGLEDA-ELFEYTMDTSSWGSLLGVKL 304 Query: 268 ISSL 271 S L Sbjct: 305 GSML 308 >gi|291514799|emb|CBK64009.1| signal peptide peptidase SppA, 67K type [Alistipes shahii WAL 8301] Length = 588 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 74/263 (28%), Positives = 123/263 (46%), Gaps = 10/263 (3%) Query: 17 LVTLTVVYFSWSSHVED-NSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSA 66 VTL + +++ ++ VA + GQI D + L +I + ++ Sbjct: 286 FVTLGDYAAQVGADLKNISADQVAVVYADGQIVDGEGYGKEIYGNTLAAKIAGVRDNEKV 345 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 A+++ ++SPGGSA A + I+R I+ ++ KPVI + AAS GY ISC ++ IVA + Sbjct: 346 KAVVLRVNSPGGSALASDVIWREIELLRAEKPVIVSMGSYAASGGYYISCPADAIVADKM 405 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 +L GSIGV + + L S A+ + S + P M+ VD Y Sbjct: 406 TLTGSIGVFGMFLDTRDALKNKLGITVDGVKSNASADFAATSPLTPLQRAMIMRGVDRVY 465 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 F V+E RN+P K L ++ GR+W G +A +VGLID GG + Sbjct: 466 TTFTNHVAEGRNLPIGKVLDIAGGRVWLGKDALEVGLIDTYGGLKTAIALAVDKAELGDG 525 Query: 247 RKIKDWNPPKNYWFCDLKNLSIS 269 ++ + + + +L++S Sbjct: 526 YRVVEVKEEPTGFAAIIASLNVS 548 Score = 96.6 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 101/287 (35%), Gaps = 38/287 (13%) Query: 1 MEFVLKKI---------KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS- 50 M F+ + L + L + S V + + +I + D+ Sbjct: 1 MNFIKTFLAGLLAVVVGTFLVFFLWIFILLGIAGSMEKSVAVHPESILKIDFSEVLTDAP 60 Query: 51 ----------------QEL-----IERIERISRDDSATALIVSLSSPGG--SAYAGEAIF 87 ++L + +E DD + + ++ GG + E + Sbjct: 61 SSDPLAGLDLMTLQTQRQLPLLKALRALEAARDDDRIKGIYLRMNGTGGVTGSAILEELR 120 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 A+ + K I +E + GY ++ ++ I ++ G+ + K LDK Sbjct: 121 EALVEFKQSGKFIVAYNETYSQGGYYLASVADKIYMQPEGMMEWAGLSMNLMFYKGLLDK 180 Query: 148 LGVSIKSVK----SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L + + + EP + +++ + MQ +V S + V+E+R I Sbjct: 181 LDLKAEVFRPTACKYKSAVEPYIYDKMSDANREQMQQLVSSMWGVIAESVAEARGIELKT 240 Query: 204 TLVLSDG-RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 ++D + EA + GL+D + ++++ LGV + Sbjct: 241 LNEMADRLEVALPDEALEKGLVDSLIYEDQMEDVFAELGVSDDYDFV 287 >gi|254303887|ref|ZP_04971245.1| S49 family protease IV [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324079|gb|EDK89329.1| S49 family protease IV [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 551 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 53/239 (22%), Positives = 112/239 (46%), Gaps = 11/239 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATA 68 + ++ + +A I + G+I + +IE+++ + + Sbjct: 265 IDFGEYISAYKRKKNKSKNTIAIINLEGEIDTRESKEANINYDNVIEKLDELEDIKNLKG 324 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 L++ ++SPGGSA E I++ ++K+ P+ + ++ AS GY I+ + A +L Sbjct: 325 LVLRINSPGGSALESEKIYQKLKKL--DIPIYISMGDLCASGGYYIATVGKKLFANSVTL 382 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIGV+ YP ++KL V+++ S+++ ++ + + ++ Y+ Sbjct: 383 TGSIGVVVLYPEFTEAINKLKVNMEGFSKGKGFDIFDVTSKLSKESKEKIIYSMNEVYNE 442 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F V ++RNI + ++ GR+W G++AK GL+D +G + SL + + Sbjct: 443 FKEHVMKARNISEEDLEKIAGGRVWLGSQAKANGLVDELGSLNDCIDSLVKDLELKDFK 501 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 88/226 (38%), Gaps = 8/226 (3%) Query: 38 VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 ++ ++I + + +++ +E + D +I+ + S E I +K+ K Sbjct: 59 ISTVSINKTL-SHEAVLKALENLVNDKKIEKIIIDVDEVDLSRVHIEEIKEIFEKLSVNK 117 Query: 98 PVITEVHEMAASAGYLISCASNIIVAA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 +I + + A+ I + + S + G ++ PY K L LGV++ ++ Sbjct: 118 EIIAIGTTFDEYSYQVALLANKIYMLNTKQSSLYFRGYEYKEPYFKNILTNLGVTVNTLH 177 Query: 157 SSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 K E +++ + + + ++ ++ + F+ LV E R D T + G + Sbjct: 178 IGDYKVAGESFSNDKMSEEKKESLINIKETLFQNFINLVKEKRK--VDITNEILSGDLIF 235 Query: 215 G--AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 +A ++GLID + EE+ +D Sbjct: 236 ANSEKAIQLGLIDGLSTYEEIGIDYNEDTIDFGEYISAYKRKKNKS 281 >gi|313886500|ref|ZP_07820216.1| signal peptide peptidase SppA, 67K type [Porphyromonas asaccharolytica PR426713P-I] gi|312924046|gb|EFR34839.1| signal peptide peptidase SppA, 67K type [Porphyromonas asaccharolytica PR426713P-I] Length = 594 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 14/243 (5%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERIS 61 L V+L+ VY + +V + G+I S L +RI + Sbjct: 289 LHFVSLSDVY-ATRGSARKGGANVGVLFAEGEINVEVADSPFNTKKVVSDRLADRILEMG 347 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 DD AL+V ++SPGGS+Y E ++ A+ K KPV+ + + AAS GY +S ++ I Sbjct: 348 EDDDYDALVVRVNSPGGSSYISEQLWYAVHKASENKPVVISMGDYAASGGYYMSSGASYI 407 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 A +++ GSIG+ P +K+GV VK++ + + + Q Sbjct: 408 FAEPSTITGSIGIFGVVPNATKLANKIGVHQDVVKTAQHADLGALDRPWTEEERALFQQY 467 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 V+ Y F++ VSE RN+ + ++ GR+WTGA+A ++GL+D +GG ++ + Sbjct: 468 VNRGYALFLKRVSEGRNMTTAQVDSIAQGRVWTGAQALELGLVDELGGLQDAIAYAASQA 527 Query: 242 VDQ 244 Sbjct: 528 GYD 530 Score = 82.0 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 100/270 (37%), Gaps = 29/270 (10%) Query: 8 IKTRYVMLSLVTLTVVYFS--WSSHVEDNSPHVARIAIRGQIED---------------- 49 I ++ L++ + ++ + + +I + I D Sbjct: 21 IFASLAVIVLISFIAALSANIANNTQQIKDGSILKIELA-HISDTYVSNPWSDLGLNKSD 79 Query: 50 -SQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 S++L +E I+ DD + ++++ PG + EA+ A++ K I Sbjct: 80 GSRDLPLSYVLEAIDEAKNDDRIKGIYLNVTDPGCGYASAEALRGALEDFKEDGKFIVSY 139 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 + + GY ++ ++ + + + G+ + K LDK+GV + K K+ Sbjct: 140 SDFYSLKGYYLASVADQLYVNKEGSIAFDGLAGGAVFFKDLLDKIGVEMMVFKVGTFKSA 199 Query: 164 PSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD--GRIWTGAEAK 219 P+ + ++ + + + + V SRN+ + L+D + T Sbjct: 200 VEPYILNSMSEANRTQITSYLGDIWGRILSEVGASRNLDSVRLQSLADSMQSVQTTDSYL 259 Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 GLID Q++ ++L +L + Sbjct: 260 ANGLIDGALYQDQALEALCSLVEVDEKDDL 289 >gi|37523775|ref|NP_927152.1| protease IV [Gloeobacter violaceus PCC 7421] gi|35214780|dbj|BAC92147.1| protease IV [Gloeobacter violaceus PCC 7421] Length = 632 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 109/234 (46%) Query: 45 GQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH 104 G ++ S+ LI+ + R + A+++ ++SPGG+ + + R +++++ +KPV+ + Sbjct: 368 GPVQGSEPLIKALREAGRREDIKAVVMRVNSPGGAGLGCDLVRREVERLRAKKPVVVSMG 427 Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 + AAS GY I+ ++ IVA ++ GSIG+ P V+ L ++ + K Sbjct: 428 DSAASGGYWIAMDASAIVAQPSTQTGSIGIFAVIPNVEQLNRDLTLTPEVFKRGARADVL 487 Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLI 224 S +NP+ ++ + SSY FV L ++ RN + L+ GR W G +A ++GL+ Sbjct: 488 SGNRPLNPEEAKIFDQELLSSYRRFVALAAKGRNKTVPQMEALAQGRTWLGRKALELGLV 547 Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278 D +GG + + + L + + ++ + Sbjct: 548 DRLGGIDTAIALAAEKAKVAPDTVALERLEGEQSTLASLLGAEATRMALRSLGI 601 Score = 97.0 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 80/238 (33%), Gaps = 20/238 (8%) Query: 32 EDNSPHVARIAIRG---------QIEDS--------QELIERIERISRDDSATALIVSLS 74 + V I + G I ++ ++ +++ + D +++ L Sbjct: 83 QIADNSVLEIKLSGDLPEKASEDPIAGLLGTPALTFKDALDNLKKAAIDTRIKGVVLRLD 142 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 E + A+ + + E + GY ++ A + T G+ Sbjct: 143 GTSLGWARVEELREALMQFRQTGKFAVGYAEGISERGYYLALALDRFYLPPTGGFEMNGL 202 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKA---EPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 + ++ L K+G+ ++ + K+ E + +M+ + Y FV Sbjct: 203 VSSNSHLPGLLAKIGIGVQYFRYGKYKSVSGETFGQPAFSEPVKEMINFNLTEQYETFVG 262 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V+ +R +P + L D T A LID + +EV L + + + Sbjct: 263 AVATARKLPASEVRRLIDTNRPTAEWALANKLIDGIAYWDEVEAGLKKQAGIAADKDL 320 >gi|188587314|ref|YP_001918859.1| signal peptide peptidase SppA, 36K type [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352001|gb|ACB86271.1| signal peptide peptidase SppA, 36K type [Natranaerobius thermophilus JW/NM-WN-LF] Length = 325 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 70/302 (23%), Positives = 128/302 (42%), Gaps = 28/302 (9%) Query: 3 FVLKK------IKTRYVML---SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE- 52 FVLK I +++ + + + V I + G+I ++ Sbjct: 12 FVLKALIVVGGIAAFFIIALSSFFLLGGAFISLLDADPVEEDDLVYVIDLEGEISEAAGP 71 Query: 53 -----------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 + E +++ D +A A+++ ++SPGG+ A + I I P + Sbjct: 72 GPGGLGISPRIVQESLDKAKAD-NAEAVVLRVNSPGGTVAASQEIASIIDDF--ELPTVV 128 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + + A S GY IS A++ I A +TS GSIGV+ + D LG+ ++ +K+ K Sbjct: 129 SMADSATSGGYYISAAADRIKAQDTSTTGSIGVISVMYNFQELYDNLGIEVEVIKTGEYK 188 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221 F + + Q++QD+ D Y FV VS+ R++ + ++ G I TG A + Sbjct: 189 DMG--FETMTEEERQIIQDLSDEMYEHFVAEVSDYRDMDKEDVYEVATGEIMTGTAAYEQ 246 Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 GL+D +GG + L + W P+ + + S L + L ++ Sbjct: 247 GLVDGLGGIDRAVDKAGELAGIEDPNT--RWLEPEGLFDQLFFPMVQESDLLELDSLSEE 304 Query: 282 TK 283 T+ Sbjct: 305 TE 306 >gi|29655269|ref|NP_820961.1| U7 family peptidase [Coxiella burnetii RSA 493] gi|153206991|ref|ZP_01945809.1| signal peptide peptidase SppA, 36K type [Coxiella burnetii 'MSU Goat Q177'] gi|154705950|ref|YP_001425390.1| signal peptide peptidase [Coxiella burnetii Dugway 5J108-111] gi|165918732|ref|ZP_02218818.1| signal peptide peptidase SppA, 36K type [Coxiella burnetii RSA 334] gi|212213444|ref|YP_002304380.1| signal peptide peptidase [Coxiella burnetii CbuG_Q212] gi|212219494|ref|YP_002306281.1| signal peptide peptidase [Coxiella burnetii CbuK_Q154] gi|29542541|gb|AAO91475.1| signal peptide peptidase [Coxiella burnetii RSA 493] gi|120577064|gb|EAX33688.1| signal peptide peptidase SppA, 36K type [Coxiella burnetii 'MSU Goat Q177'] gi|154355236|gb|ABS76698.1| signal peptide peptidase [Coxiella burnetii Dugway 5J108-111] gi|165917560|gb|EDR36164.1| signal peptide peptidase SppA, 36K type [Coxiella burnetii RSA 334] gi|212011854|gb|ACJ19235.1| signal peptide peptidase [Coxiella burnetii CbuG_Q212] gi|212013756|gb|ACJ21136.1| signal peptide peptidase [Coxiella burnetii CbuK_Q154] Length = 313 Score = 123 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 61/293 (20%), Positives = 118/293 (40%), Gaps = 18/293 (6%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP-HVARIAIRGQIEDSQEL-----IERIE 58 ++ +++L L S +V+ + + G I + + + Sbjct: 27 VRFAGWMFILLLFAILIFAPSSSELEARRGDGAYVSLVRMNGTIMSNTTFSALRVVPELR 86 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISC 116 + D ++ +++ ++SPGGS I I ++K + K V+ + AS YL+S Sbjct: 87 KAFADKNSKGVVLLINSPGGSPVQASIIRDKIIELKKQYHKKVVVVGEDELASGAYLVST 146 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 ++ I +L GSIGV+ L K+GV+ + + K PF V P+ V+ Sbjct: 147 GADKIYVNNDTLTGSIGVIMGGFGFVDTLKKVGVTRRLFVAGDHKDRLDPFQPVKPEDVE 206 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 + V+ + F+ V + R + G WTG EA ++G++D V + Sbjct: 207 KINKVLAQVHQNFIDQVIQGRGNRLHGDRQEIFSGDFWTGKEAAQLGVVDGTANLWTVLE 266 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS---LLEDTIPLMKQTKVQ 285 + ++ KD+ ++ N + L +T PL +Q +V Sbjct: 267 R------EFGVKDYKDYTTRVSFLQALFHNTATELYFHLTNETSPLREQMQVD 313 >gi|83859154|ref|ZP_00952675.1| putative protease IV [Oceanicaulis alexandrii HTCC2633] gi|83852601|gb|EAP90454.1| putative protease IV [Oceanicaulis alexandrii HTCC2633] Length = 623 Score = 123 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 70/272 (25%), Positives = 122/272 (44%), Gaps = 13/272 (4%) Query: 15 LSLVT--LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRD 63 L V + S + I G I D E I R D Sbjct: 303 LGFVASDFFDYVEANREFNLIPSDKIVVIKAVGGIVDGNGDGGVIGGDQHAELIRRARLD 362 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIV 122 D A+++ + S GGSA+A E I ++ + K VI + +AAS GY I+ ++ I Sbjct: 363 DDVRAIVLRIDSGGGSAFASELIREELEMARLEGKIVIASMGGVAASGGYWIATPAHEIW 422 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A T++ GSIG+ P + L ++GV + + +PS F V + ++Q + Sbjct: 423 AEPTTITGSIGIFGFIPTFEDSLAEIGVYEDGIALTETARQPSQFGGVTEEWDTILQSSI 482 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 ++ Y F+ +V+ESRN+ D+ ++ GRIWTG +A GL+D +GG +E + A Sbjct: 483 EAGYERFLSIVAESRNMTRDEVDAVAQGRIWTGQQAFDRGLVDQLGGYDEAIAAAAARAG 542 Query: 243 DQS-IRKIKDWNPPKNYWFCDLKNLSISSLLE 273 + ++ ++ + + L+ S+ + Sbjct: 543 LEEGDYRVIEFRDEVDPFHQFLQMFGQSAGVA 574 Score = 71.2 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 92/280 (32%), Gaps = 36/280 (12%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------- 50 + +I +V+L L+ + + + E V A G + + Sbjct: 22 ILRIFGIFVILFLLIVFIGGLLSNDEFELADSGVLIFAPEGPVVEEPTTISPNDAFTASL 81 Query: 51 -----------QELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRKP 98 +++E R + DD T ++++L GG A I + ++ Sbjct: 82 LGGGPGSEVLLSDVVEGFRRATEDDDVTTIVMNLERFGGGYPAALHQIAHEMDAFRDAGK 141 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 I + + GY ++ ++ I + G + + L++L V++ + Sbjct: 142 EIIVYGDNYSMTGYFLASHASQIYLHDMGGANVNGYAVYRTFFRSLLERLNVTVNVYRVG 201 Query: 159 PMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI---- 212 K+ P+ E++ A + + V ++ + V +R + +D Sbjct: 202 TFKSALEPYLGDEMSEPAAEANRYVFGDLWNAYQDSVEAARGLSDGALQTYADQFPELLV 261 Query: 213 ----WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 T A + GL+D V G+ L Sbjct: 262 AQGGDTAAVSLNEGLVDEVIGRGHYRDLLEERFGRDESED 301 >gi|91069876|gb|ABE10807.1| signal peptide peptidase SppA [uncultured Prochlorococcus marinus clone ASNC1363] Length = 269 Score = 123 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 72/264 (27%), Positives = 132/264 (50%), Gaps = 5/264 (1%) Query: 33 DNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + +ARI I I S +++ +++I D ALIV + SPGG+ + I+ AI Sbjct: 8 KSKKRIARIVIDEPITSSTRVSVLKALKQI-EDREFPALIVRIDSPGGTVGDSQEIYSAI 66 Query: 91 QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++K++ VI ++AS G I AS+ IVA ++ GSIGV+ + + LDK+G Sbjct: 67 KRLKDKGCKVIASFGNISASGGVYIGVASDKIVANPGTITGSIGVIIRGNNLSELLDKIG 126 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + ++VKS K SP ++ + ++Q ++D SY F V++ RN+P ++ +D Sbjct: 127 IKFETVKSGVFKDILSPDKPLSEEGRGLLQGLIDESYKQFTEAVADGRNLPVEEVRKFAD 186 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 GRI+TG +A ++GL+D VG + + + + + K + + Sbjct: 187 GRIFTGTQALELGLVDKVGDEFVARELAAEMVNIDPKIQPLTFGKKKKKILGLIPGSRMI 246 Query: 270 SLLEDTIPLMKQTKVQGLWAVWNP 293 + + I + + LW ++ P Sbjct: 247 EKIINNIFFEFDSSNKVLW-LYKP 269 >gi|239995030|ref|ZP_04715554.1| signal peptide peptidase SppA, 67K type [Alteromonas macleodii ATCC 27126] Length = 621 Score = 123 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 119/229 (51%), Gaps = 11/229 (4%) Query: 14 MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDD 64 + S T V +E + VA + +G I D + + DD Sbjct: 308 LTSFNTYLKVVNPPMPVIESDMDKVAIVVAKGTILDGNQKAGTIGGDSTARLLRKARLDD 367 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVA 123 + A+++ + SPGGSA+A E I + + +++ KPVI + AAS GY I+ +++ I+A Sbjct: 368 NVKAVVLQIDSPGGSAFASEIIRQEVLQLQQAGKPVIASMSTYAASGGYWIAASTDRIIA 427 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 + +++ GSIGV + + LD LG+ V S+ + S + P+ Q++Q V+ Sbjct: 428 SPSTITGSIGVFGMFMTYENSLDYLGIHSDGVGSTELAG-FSTVRPLAPEFGQILQRNVE 486 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++Y F+ LVS +R + ++ ++ GR+W G +A ++GL+D +G ++ Sbjct: 487 NTYGNFLSLVSNARGMSVEEVDSVAQGRVWIGEDAIELGLVDQLGTVDD 535 Score = 95.4 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 45/326 (13%), Positives = 104/326 (31%), Gaps = 40/326 (12%) Query: 1 MEFVLKKIKTR-YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRG--QIEDS------- 50 + F K ++++ + + + N + + G IE Sbjct: 19 LNFTRKLFFNLIFIVIFVGLIIAITGQDDEQFTVNKDSALFLTLNGKLVIEKESIDPFEQ 78 Query: 51 -----------------QELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIFRAIQK 92 +++++ +E +D AL++ L G + AI Sbjct: 79 FLQESLGSEPENPEVLVRDVVKVLENAQKDRRIKALVLDLQGLTGGGLDKLRTVANAIDA 138 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 K + + + + + Y ++ ++ I + G Y K L+KL V+ Sbjct: 139 FKESEKPVYAIGDYFSQDQYYLAAHADSIYLNPMGGLMFEGYGRYGMYFKDMLEKLKVTT 198 Query: 153 KSVKSSPMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 + K+ P +++ +A + + +D + + V+ +R I +G Sbjct: 199 HIFRVGTYKSAVEPIMRNDMSEEAKEAEKQWLDGYWAQYKADVAAARGIDEANFDETLEG 258 Query: 211 RI--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + A + +D + +EEV L L + + Y Sbjct: 259 LLAKFEAAGGDFAQYALENNWVDALKTREEVRLELTELVGEDENNHGVNLTSFNTYLKVV 318 Query: 263 LKNLSI--SSLLEDTIPLMKQTKVQG 286 + + S + + I + K T + G Sbjct: 319 NPPMPVIESDMDKVAIVVAKGTILDG 344 >gi|332971034|gb|EGK10005.1| signal peptide peptidase SppA [Kingella kingae ATCC 23330] Length = 336 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 65/293 (22%), Positives = 124/293 (42%), Gaps = 29/293 (9%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNS------------PHVARIAIRGQIEDSQE- 52 + + + ++ L+ + + PH A + + G+I S++ Sbjct: 42 RMWRNIWRVVGLLVFLAMLAGLRGGMRQGEQARESASRFAHQPHTAVVKLTGEIGGSEQR 101 Query: 53 -----LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVH 104 L E ++ R+ +A A+I+ +SPGGS F +++++ I Sbjct: 102 NQVDILREGMQAAYRNPNAKAIIIHANSPGGSPVVSNIAFAEVRRMRAEHKNIPVYVVAQ 161 Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 +M AS Y I+ A++ I A +SL+GSIGV+ ++KLG+ + + K Sbjct: 162 DMCASGCYYIAAAADKIFADPSSLMGSIGVIGSSFDATGLMEKLGIQRRVRIAGNNKGMG 221 Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY--DKTLVLSDGRIWTGAEAKKVG 222 PF+ +P+ + Q ++D + F++ V + R + L GRI+TG EAKK G Sbjct: 222 DPFTAESPEQQAIWQQMLDQIHGEFIQAVKQGRGNRLQEKQYPDLFSGRIFTGIEAKKAG 281 Query: 223 LIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 L+D +G V + + + D+ P ++ L + + Sbjct: 282 LVDDLGNVYSVARDVVK------APNLVDYTPEQDDLARLLSRHLGAQVQNQA 328 >gi|15807090|ref|NP_295819.1| endopeptidase IV-like protein [Deinococcus radiodurans R1] gi|6459892|gb|AAF11646.1|AE002045_6 endopeptidase IV-related protein [Deinococcus radiodurans R1] Length = 556 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 113/273 (41%), Gaps = 22/273 (8%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------------DSQELIERIE 58 + + + + VA +++ G I S ++ ++ Sbjct: 262 LAAVLDLLLPNKPGTPKAGKVAVVSVVGSIVTGKSKNNPLPLPLLGGPMAGSDTVVAALK 321 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 D + A++V ++S GGSA A + ++R I + KPV+ + E AAS GY ++ + Sbjct: 322 HAKEDKATKAIVVYVNSGGGSALASDLMWREIA--TSDKPVVVVMGEYAASGGYYLATHA 379 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + IVA+ +L GSIGV+ P ++ F + G+ + V SP + + Sbjct: 380 DKIVASPYTLTGSIGVVSGKPVMQEFNGRQGLKPERVGR-DRALMYSPSRPYTDEERAHI 438 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 + + Y F V+E R++ ++ + GRIW+G +A ++GL+D +G + Sbjct: 439 EKGIGEVYDRFTSRVAEGRDLSQERVNEIGRGRIWSGYDALELGLVDELGDLHRGLELAR 498 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 L + P K + + + Sbjct: 499 ELAGLPDDAPTWNAAPKKQGPLPEFVQEAAQAA 531 Score = 58.5 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 68/169 (40%), Gaps = 3/169 (1%) Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 ++V +S + AI ++++ K + + ++ ++ + S A I A E++ Sbjct: 88 GVLVRVSEFTAAPATAHAIREILRRLSENKRTVAYLPQLTMTSLIVASGA-QEIAAPESA 146 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSS 185 V G + ++ FL K G+ ++++ KA ++ + + + Sbjct: 147 DVMVSGFAAEPTFLGAFLKKHGIEFENLRIKEYKAALTRFSQDHMDEANREQLSAYLGGL 206 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 + +++ R + + L + + A GLID V ++E+ Sbjct: 207 EAAWAADLAQGRGVSEEDALGWLTADLTSAQGAVDAGLIDRVAYEDELI 255 >gi|331694042|ref|YP_004330281.1| peptidase S49 [Pseudonocardia dioxanivorans CB1190] gi|326948731|gb|AEA22428.1| peptidase S49 [Pseudonocardia dioxanivorans CB1190] Length = 293 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 63/276 (22%), Positives = 117/276 (42%), Gaps = 23/276 (8%) Query: 31 VEDNSPHVARIAIRGQIE-----------DSQELIERIERISRDDSATALIVSLSSPGGS 79 + V+ + + G I ++ + + +ER D A+ + ++SPGG+ Sbjct: 20 DRSDKGVVSLVRLHGVITPSSGPVPRAVLNAASVEKVLERAFSADGLVAVALQINSPGGA 79 Query: 80 AYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 I I+ + K PV+ ++AAS GY ++CA + I A TS+VGSIGV+ Sbjct: 80 PTQSALIADRIRGLAEEKEVPVLAFCEDVAASGGYWLACAGDEIYAHATSIVGSIGVISA 139 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 ++ +++ GV + + K+ PF P+ V+ ++ + D + F V+E R Sbjct: 140 GFGLQGLIERFGVERRLYTAGRAKSRLDPFLPEKPEDVEWLRGLQDQLHEMFTMWVTERR 199 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 + L G +WTGA A + GLID +G V + +I + Sbjct: 200 GDRLNTERDLFTGEVWTGARAVETGLIDGLGTPRSVLADRF------PDAEIVPVESRRP 253 Query: 258 YWFCDLKNLSISSL----LEDTIPLMKQTKVQGLWA 289 ++ + + + + +V+ LWA Sbjct: 254 LLARLGIGAPAAAATFSPVNSLLGIAEAAEVRALWA 289 >gi|254293569|ref|YP_003059592.1| signal peptide peptidase SppA, 36K type [Hirschia baltica ATCC 49814] gi|254042100|gb|ACT58895.1| signal peptide peptidase SppA, 36K type [Hirschia baltica ATCC 49814] Length = 590 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 69/288 (23%), Positives = 124/288 (43%), Gaps = 22/288 (7%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRG-----------------QIEDSQELIERIERISR 62 L + + D +P +A I G QI S + +I + Sbjct: 275 LIDIAQYTPKKIADKAPKIALIGGEGGIMPGSSGGDIFNPNAEQIIASDTVSSQIYDAGK 334 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNI 120 D+S A++ + S GGS A + I+ AI+ V+N KPV+ + +AAS GY IS ++ Sbjct: 335 DESIKAIVFRVDSGGGSPTASDQIWNAIEYVQNTYNKPVVISMGSVAASGGYYISMGADK 394 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-PMKAEPSPFSEVNPKAVQMMQ 179 I A ++ GSIGV + L K+GV+ + P + + ++ + M+ Sbjct: 395 IYANRATITGSIGVYGGKFALAEGLRKIGVNPSRIDVGGPYASIYTSTERLSEQQRATMR 454 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + +Y F RL ++ R + + ++ GR+WTG AK+ GL+D +GG + + Sbjct: 455 ASLARTYDRFTRLAADGRGMSQEALHEIAKGRVWTGVAAKENGLVDELGGLIDAIEGAKQ 514 Query: 240 LGVDQSIRKI--KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 L + +++ P ++ L S+ T+ + Q Sbjct: 515 LAGIDADKQVNLVSMTPEQDPVQAIGSMLGASAQSMHTLNQLSQIMGD 562 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 43/275 (15%), Positives = 100/275 (36%), Gaps = 28/275 (10%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARI-------------------AIRGQIED 49 ++ + + S + D +P A I ++ GQ Sbjct: 12 FLALILFFIALPIFILTLVSGNASDVAPKGAVILEIDMRYEYPDQKPTDGLASLFGQ-TS 70 Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH---EM 106 +++ +++R + DD +++ S G + E I AI+K++ + + Sbjct: 71 FVDILTKLDRAATDDHVKGVVLRASEMGFGSSRAEEIRSAIKKLQANDKFVLAHSQGFFV 130 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 A Y AS+ I S + G + ++K D LG+S + K P+ Sbjct: 131 GGPAAYRAISASDEIWLQAGSDLSIPGFSLETLFLKGLFDNLGISAEIEAFHEFKNSPNV 190 Query: 167 FS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK---TLVLSDGRIWTGAEAKKV 221 + + + M+++ + + + ++ R + + ++ +A + Sbjct: 191 YKETDFTESHAKAMRELAEGLWQVSLIDIANDRADKMADNAILRDVLENSPYSSDQALDL 250 Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 GL+D +G E++ + L + + I + P K Sbjct: 251 GLVDKLGWPEDLVRHAMGLAPNAELIDIAQYTPKK 285 >gi|156742495|ref|YP_001432624.1| signal peptide peptidase SppA, 36K type [Roseiflexus castenholzii DSM 13941] gi|156233823|gb|ABU58606.1| signal peptide peptidase SppA, 36K type [Roseiflexus castenholzii DSM 13941] Length = 561 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 118/248 (47%), Gaps = 3/248 (1%) Query: 43 IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102 I GQI S+ +++ + + R+ A+I+ ++SPGGSA+ E I+R ++++ RKPV+ Sbjct: 311 IGGQIAGSESIVQALRQAERNPRLAAVILYVNSPGGSAFDSELIWREVRRLDRRKPVVAV 370 Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 + ++AAS GY ++ + I+A ++ GSIGVL P + + + GV+ ++ A Sbjct: 371 MGDVAASGGYYVASGARTILAQRGTITGSIGVLIVRPVIDGLVKRAGVNTVAIGRGANSA 430 Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVG 222 + + ++ ++D SY F + V E R++ + L+ GR+W G EA + Sbjct: 431 FFISDAP-TEQERAAVRALIDDSYTVFKQRVMEGRSMSEEALEPLAGGRVWMGGEAHESH 489 Query: 223 LIDVVGGQEEVWQSLYALGVDQSI--RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 LID VGG E L + + S L + + L++ Sbjct: 490 LIDDVGGMPEALLKAQELAGLPRDQTAPLVLIGGGRGRLAPQTFPEEPSKTLREALALLR 549 Query: 281 QTKVQGLW 288 Q + + Sbjct: 550 QPLIWAIL 557 Score = 83.9 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 97/210 (46%), Gaps = 4/210 (1%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 EL R E ++ D +++ + + + + + I++ + + + Sbjct: 61 SLSELRRRFEWLASDPQVKGVVLDIGTLTCGWATIQNLDQDIRRFREQGKLAVARITNPD 120 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP-- 166 + Y+ +CA+++IVA SL+ G+ + ++K L K+ VS++ SP K Sbjct: 121 TKTYVAACAADLIVAPPVSLLTVTGLYAEVRFLKDALAKVDVSVEVTAVSPYKTAGDSLA 180 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 SE++P+ + ++ ++D Y V ++ +R+ D+ L D W+ A++ GLID Sbjct: 181 CSEMSPENREQIERLLDQRYALIVETIANARHKTVDEVCSLIDTAPWSARRAQEAGLIDA 240 Query: 227 VGGQEEVWQSLYALGVDQ--SIRKIKDWNP 254 V ++E+ L + + +I +W+ Sbjct: 241 VLYEDELPAFLASRTGASPAKLPEIAEWSQ 270 >gi|91203949|emb|CAJ71602.1| similar to signal peptide peptidase [Candidatus Kuenenia stuttgartiensis] Length = 328 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 62/248 (25%), Positives = 119/248 (47%), Gaps = 7/248 (2%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASA 110 + E + D A+++ ++SPGG A + ++ I + K +K VI + ++ AS Sbjct: 81 VKEELTLAKMDKQVKAILLRINSPGGKVTASDMMYYEIMRFKEETKKKVIACIMDIGASG 140 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 GY ++ +++ I+A T++ GSIGV+ ++ L K+G++ SVK+ K SP ++ Sbjct: 141 GYYVAASADKIIAHPTTVTGSIGVIMINLSIEGLLQKVGIADASVKTGEHKDMGSPLKKM 200 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESR-NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 + ++ +++++ Y F+ ++ E+R I +K L+DGRI++ +A + GLID +G Sbjct: 201 TEEDRRIFSEILNAMYERFLCVIEENREGISMEKIRELADGRIYSAQQALENGLIDQIGY 260 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNP--PKNYWFCDLKNLSIS--SLLEDTIPLMKQTKVQ 285 ++ R I P KN + L S +L I + Sbjct: 261 LDDAVSIAKKETNLTEARVILYHRPGSYKNNIYSQLTGASAGNINLFNIDIKTFIHSGAP 320 Query: 286 GLWAVWNP 293 +W P Sbjct: 321 SFMYIWMP 328 >gi|219886303|gb|ACL53526.1| unknown [Zea mays] Length = 565 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 61/259 (23%), Positives = 118/259 (45%), Gaps = 16/259 (6%) Query: 32 EDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSLSSPGG 78 + +A I G I +++LIE+I + + A+I+ + SPGG Sbjct: 258 QGGGEQIAIIRASGSITRTRSPLSAPSSGIVAEQLIEKIRTVRESEKYKAVILRIDSPGG 317 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A A + ++R I+ + N KPV+ + ++AAS GY ++ A+ +IVA + +L GSIGV+ Sbjct: 318 DALASDLMWREIRLLANSKPVVASMSDVAASGGYYMAMAAPVIVAEKLTLTGSIGVVTGK 377 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKA-EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 ++ +++ + + + + + P ++ + ++Y F + SR Sbjct: 378 FCLQKLYERIDFNKEIISKGRYAELNVNDQRPLRPDEAELFEKSAQNAYALFRDKAAMSR 437 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--KDWNPP 255 ++ D+ ++ GR+W+G +A GL+D VGG + +KI + + P Sbjct: 438 SMSVDQMESVAQGRVWSGHDAFSRGLVDSVGGLSQALAIAKQKANIPKDKKIQLVEVSKP 497 Query: 256 KNYWFCDLKNLSISSLLED 274 L + S L D Sbjct: 498 SPSLPEILSGIGGSLLGVD 516 Score = 81.2 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 89/235 (37%), Gaps = 13/235 (5%) Query: 35 SPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVSLSSPGGSAYAG 83 V + +RG+I D ++ E + + D + + + + Sbjct: 12 KGSVLNMKLRGEISDQLKTRFSSGLSLPQICENFVKAAYDPRISGIYLHIEPLRCGWAKV 71 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + I R I K + + Y ++CA + A ++ V G+ Q +++ Sbjct: 72 DEIRRHIVDFKKSGKFVVGYMPVCGEKEYYLACACGELYAPPSAYVALFGLTVQQTFLRG 131 Query: 144 FLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L+K+G+ + + K+ + ++ + +M+ ++D+ Y ++ +S + Sbjct: 132 VLEKVGIEPEIQRIGKYKSAGDQLARKSMSNEVREMLAALLDNIYGNWLETISSTHGKKK 191 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 ++ + ++ A K+ G + + +EV L + + ++ + K Sbjct: 192 EEIEGFINSGVYQVARLKEEGWVTDLLYDDEVMTLLKERVGQKDKKSLRMVDYSK 246 >gi|33519890|ref|NP_878722.1| protease IV, a signal peptide peptidase [Candidatus Blochmannia floridanus] gi|33504235|emb|CAD83498.1| protease IV, a signal peptide peptidase [Candidatus Blochmannia floridanus] Length = 625 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 117/242 (48%), Gaps = 14/242 (5%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS------------QELIERIERISR 62 + +++ S+ + ++ +A I I+G I D + +I Sbjct: 306 FNAISMYDYKLQESNKQQHDNNQIAIICIQGTIIDGVNSNNISGSVGGDTIAYQIRNARF 365 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNII 121 D ++I+ ++SPGGS +A E I + I +N KPVI + +AAS GY I+ +N I Sbjct: 366 DPKIQSIILRINSPGGSVHASELIRQEIIATRNSGKPVIVSMGNIAASGGYWIATPANFI 425 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 +A+ +++ GSIGV ++ LD +GV V +SP+ + + +MQ Sbjct: 426 IASNSTITGSIGVFGIINTLEESLDAIGVHNDEVSTSPIANLSVA-KALPVEFKNIMQLY 484 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 VD+SY +F++ V++ R ++ G IWTG++A K GLID +G ++ L Sbjct: 485 VDTSYQYFIKTVAKFRCKTIADLDQIAQGHIWTGSDAIKHGLIDKIGDFDDAISKAVELA 544 Query: 242 VD 243 Sbjct: 545 HL 546 Score = 74.3 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 75/205 (36%), Gaps = 11/205 (5%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAG 111 ++ + + D + T LI+SL + G + E I + + + K +I + + + Sbjct: 98 IVNILRQAKNDPNITGLILSLKNFSGGNQSSLEYIGKTLLEFKKSGKLIYAISDNYNQSQ 157 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SE 169 Y ++ +N I V G+ Y + L L ++ + K+ PF + Sbjct: 158 YFLASYANKIYLTPQGSVDLRGISTSKLYYQSLLKNLKINTHVFRVGAYKSAVEPFIRNN 217 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKKV 221 ++ + ++ + ++ ++S +RNI + L + T A Sbjct: 218 MSSQVRHEENIWINQLWDQYLNIISCNRNITKQQIFPGINTIFNELYNMNGDTANYAYHK 277 Query: 222 GLIDVVGGQEEVWQSLYALGVDQSI 246 ID V + ++ + + Sbjct: 278 KWIDKVESRFDIENEMKKIFGKNKK 302 >gi|304413097|ref|ZP_07394570.1| protease IV (signal peptide peptidase) [Candidatus Regiella insecticola LSR1] gi|304283940|gb|EFL92333.1| protease IV (signal peptide peptidase) [Candidatus Regiella insecticola LSR1] Length = 607 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 71/285 (24%), Positives = 129/285 (45%), Gaps = 25/285 (8%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERI---------ERISRDDS 65 + +++ S +A I I G I D + I + D Sbjct: 305 FNFISIYDY---QSQEQPQQDNEIAVILINGAIVDGAKTPGNIGGDAAAAQIRQARLDPK 361 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAA 124 A+I+ ++SPGGSA A E I + ++ KP++ + MAAS GY +S +N I+A+ Sbjct: 362 IKAVILRVNSPGGSASASEVIRAELVALRRANKPLVVSMGGMAASGGYWVSTPANYIIAS 421 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 ++L GSIG+ + LD +GV V +SP+ + + P+ QMM+ ++ Sbjct: 422 PSTLTGSIGIFGVINTFENSLDNVGVHSDGVATSPLADV-AITKALPPEFSQMMKMTIEH 480 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 Y F+ LV+ +R + ++ GR+WTG++A++ GL+D +G ++ + + L + Sbjct: 481 GYQTFIELVATARKKTIAQMDEVAQGRVWTGSDAQQRGLVDQLGDFDDAVKKVAELAKLK 540 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 WF + NL ++ D I Q + ++ Sbjct: 541 QYTL---------QWFSEQPNL--KEVILDQINTSMQAMLPPPFS 574 Score = 97.8 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 98/284 (34%), Gaps = 39/284 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + FV + + + +L + +YF + + E + + G I D Sbjct: 19 LNFVRELVCNLFFILLIFIAISLYFQFQNKSEPVKG-ALLVDLNGIIVDKPVVNNKLRVW 77 Query: 52 ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92 E++E + + D++ T +++SL++ G+ + I +A+ + Sbjct: 78 GRELLGSSSTRLQENSLFEIVETLRQAKSDNNITGIVLSLNNLAGADQPSLQYIGKALSE 137 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 +N I + E + A Y ++ +N I A V G Y K LDKL VS Sbjct: 138 FRNSGKPIYAIGESYSQAQYYLASFANKIYLAPQGSVQLHGFSTNTLYYKSLLDKLKVST 197 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203 + K+ P ++ A + V+S + ++ V+ +R + + Sbjct: 198 HIFRVGTYKSAVEPMLRDNMSDAAREASSRWVESLWQNYLTTVAANRYLSPQQLFPSAPE 257 Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 L A L+D + EV L Sbjct: 258 MITALQTKEGNLAKYALDNKLVDQIASNPEVETELSKTFGWDEE 301 >gi|288801210|ref|ZP_06406665.1| signal peptide peptidase SppA, 67K type [Prevotella sp. oral taxon 299 str. F0039] gi|288331821|gb|EFC70304.1| signal peptide peptidase SppA, 67K type [Prevotella sp. oral taxon 299 str. F0039] Length = 590 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 59/275 (21%), Positives = 130/275 (47%), Gaps = 17/275 (6%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQ---------ELIER-----IERISRDDSATALIVSLS 74 + ++ +A +G I +Q +++ + +E++ +DD+ A+++ ++ Sbjct: 294 ENSTSDNNEIAVYYAQGTIVQNQAVGLFAQGGDIVSQTVCTDLEKLMKDDNIKAVVIRIN 353 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 S GG AYA E I+ + ++K +KPV+ + + AAS Y +SC +N I+A T+L GSIG+ Sbjct: 354 SGGGDAYASEQIWHQVTELKAKKPVVISMGDYAASGAYYLSCNANWIIAQPTTLTGSIGI 413 Query: 135 LFQYPYVKPFLD-KLGVSIKSVKSSPMKAE-PSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 P ++ KLGV ++++ + +N V+ + + Y F + Sbjct: 414 FGVIPDFSGLVNGKLGVKFDEIQTNKNSSFGNVFARPLNQDEVKYLTAKIQRGYSLFRKR 473 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 V+E R++ ++ ++ G +W G++A + L+D +GG E L + ++ Sbjct: 474 VAEGRHLTIEQVEKIAQGHVWLGSDALNIHLVDQLGGLNEAIAKAAQLAKLTN-YTTNNY 532 Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 ++ + ++ +++ + L + L Sbjct: 533 PAQASWLDMFKEAEGRNNYIDEQLRLTLGDLYEPL 567 Score = 95.8 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 34/257 (13%), Positives = 93/257 (36%), Gaps = 23/257 (8%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------------QELIER 56 +++ + S SS + + V + + G IE+ +L+ Sbjct: 26 LMISFVGMVASSSSKMAIKNNSVLVLNLSGTIEEQTKENILGQITGNTVNSLGLDQLLSA 85 Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116 I++ +D+ + + + + A+ +N I + Y ++ Sbjct: 86 IQKAKSNDNIKGIYIEAGLLSSGYATLQEVRNALLDFRNSGKWIIAYGDEYTQGAYYVAS 145 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKA 174 +N ++ ++ G+ Q ++K + K+GV +K K+ ++E ++ Sbjct: 146 VANKVLINPEGMLDWHGLAAQPMFIKDAVAKVGVRYNVIKVGKYKSATEMYTEDQMSDAN 205 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--GAEAKKVGLIDVVGGQEE 232 + + ++ ++ + V++SR + D +D I + L+D + ++ Sbjct: 206 KEQVGRFLNGTWQVLCQSVAKSRGVEVDSLNAYADRLIALEAATQLLSYKLVDGLVYTDQ 265 Query: 233 VWQSLYALGVDQSIRKI 249 + + L + I Sbjct: 266 IKPIINKLLGQEPTDVI 282 >gi|262200199|ref|YP_003271407.1| peptidase S49 [Gordonia bronchialis DSM 43247] gi|262083546|gb|ACY19514.1| peptidase S49 [Gordonia bronchialis DSM 43247] Length = 297 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 67/266 (25%), Positives = 118/266 (44%), Gaps = 15/266 (5%) Query: 36 PHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 HVA + + G I S + ++R + A++V ++SPGGS E I Sbjct: 19 DHVAVVRLDGPIGASPVGRPGLTTDAVEPILKRAFETERLKAVVVVVNSPGGSPAQSEYI 78 Query: 87 FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I+++ + K PV+ ++AAS GY I+CA++ I AA TS+VGSIGV+ + Sbjct: 79 AERIRQLASEKGVPVLAFCEDVAASGGYWIACAADEIFAAHTSIVGSIGVVSSGFGLADV 138 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK- 203 L + GV + S KA FS P+ V+ ++ + + F+ V + R + Sbjct: 139 LSRFGVERRLYTSGDNKARLDTFSPAVPEDVEWLKGLQHQLHEAFITWVRQRRGRKLNAP 198 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L G +W G+ A +VGL+D +G V D I ++ P Sbjct: 199 DDQLFSGDVWVGSNAAEVGLVDGIGVMRSVI---AERYPDAEITVVQAPKPLLARVVGAQ 255 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289 + + + + + + ++ G+ + Sbjct: 256 MSTAGAGVAGGWLTAVAESLTTGILS 281 >gi|157413729|ref|YP_001484595.1| signal peptide peptidase SppA [Prochlorococcus marinus str. MIT 9215] gi|157388304|gb|ABV51009.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus marinus str. MIT 9215] Length = 269 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 73/264 (27%), Positives = 131/264 (49%), Gaps = 5/264 (1%) Query: 33 DNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + +ARI I I S +++ +++I D ALIV + SPGG+ + I+ AI Sbjct: 8 KSKKRMARIVIDEPITSSTRVSVLKALKQI-EDREFPALIVRIDSPGGTVGDSQEIYSAI 66 Query: 91 QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++K++ VI ++AS G I AS+ IVA ++ GSIGV+ + + LDK+G Sbjct: 67 KRLKDKGCKVIASFGNISASGGVYIGVASDKIVANPGTITGSIGVIIRGNNLSELLDKIG 126 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + ++VKS K SP ++ + ++Q ++D SY F V+E RN+P + +D Sbjct: 127 IKFETVKSGVFKDILSPDKPLSDEGRDLLQGLIDESYKQFTEAVAEGRNLPVEDVRKFAD 186 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 GRI+TG +AK +GL+D +G + + + + + K + + Sbjct: 187 GRIFTGTQAKDLGLVDEIGDEFVARELAAEMVNIDPKIQPLTFGKKKKKILGLIPGSRMI 246 Query: 270 SLLEDTIPLMKQTKVQGLWAVWNP 293 + + I + + LW ++ P Sbjct: 247 EKVINNIFFEFDSSNKVLW-LYKP 269 >gi|302531492|ref|ZP_07283834.1| signal peptide peptidase SppA [Streptomyces sp. AA4] gi|302440387|gb|EFL12203.1| signal peptide peptidase SppA [Streptomyces sp. AA4] Length = 281 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 63/272 (23%), Positives = 111/272 (40%), Gaps = 18/272 (6%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQE-----------LIERIERISRDDSATALIVSLSSPG 77 D VA + + G I + + + R D A+ + ++SPG Sbjct: 15 GDRGDRKDVVAVVKLHGVITPTPSPLARGAINLGAVESALTRAFAHDRLKAVALQINSPG 74 Query: 78 GSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 G+ + I+++ + K PV+ ++AAS GY ++CA++ I A TS+VGSIGV+ Sbjct: 75 GAPTQSGLVAERIRQLADEKGVPVLAFAEDVAASGGYWLACAADEIYAHRTSMVGSIGVI 134 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 L++ G+ + + K+ PFS P+ V+ ++++ + FV V E Sbjct: 135 SGGFGFTGLLERFGIERRLHTAGANKSRLDPFSPEKPEDVEWLKNMHGQLHELFVEWVKE 194 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 R + L G +W G +A +GL+D +G E+ + Y Sbjct: 195 RRGDRLTDSADLFTGDVWLGQKAVDLGLVDGLGSLREIVRERYPDAEIS-----VAEPKK 249 Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 L + +S L D + GL Sbjct: 250 PLLARLGLGAPAAASALLDAVTTKAAWSRFGL 281 >gi|224437564|ref|ZP_03658522.1| hypothetical protein HcinC1_06345 [Helicobacter cinaedi CCUG 18818] gi|313144017|ref|ZP_07806210.1| protease IV [Helicobacter cinaedi CCUG 18818] gi|313129048|gb|EFR46665.1| protease IV [Helicobacter cinaedi CCUG 18818] Length = 267 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 54/268 (20%), Positives = 123/268 (45%), Gaps = 4/268 (1%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSP 76 + + V E++ P+VA++ + I +S+ + +++I +++ +++ + SP Sbjct: 1 MFIVLFVIVVGGDESENDPPNVAKLHLTMPIYESESFAQAVKKIKENENIKGVLLVIDSP 60 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GG A I I+ + + PVI V AS Y +N I A +L+GS+GV+F Sbjct: 61 GGLVGASIEIADMIKDLAQKMPVIAYVQGSMASGSYYAGMYANEIYANRGALIGSVGVIF 120 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 ++ + K+GV + +K+ K + + + + Q +++++ Y F V ++ Sbjct: 121 SGVNIEELMQKVGVKEQGIKAGAFKEIGTMTRKWSDEERQFLENLLQEQYAMFYNDVLQA 180 Query: 197 RNIPY--DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 R ++G++++ +A ++GLID V + ++L + ++ Sbjct: 181 RGEKLKSKDYHDFAEGKVFSANKALELGLIDKVESMQGAMEALRQKVGLDKLIWLE--KD 238 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQT 282 + L + S +L ++P +K + Sbjct: 239 KFETYMDKLFDTMNSKILSLSLPSLKAS 266 >gi|262039550|ref|ZP_06012849.1| protease IV [Leptotrichia goodfellowii F0264] gi|261746428|gb|EEY33968.1| protease IV [Leptotrichia goodfellowii F0264] Length = 549 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 129/282 (45%), Gaps = 12/282 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATA 68 V+ + + +A I + G I + + E+++++ + Sbjct: 264 VSFEDYLSIYKEKKNKSKDTIAIINLEGIIEPKKSNKVNITYKNVCEKLDKLEDIKNLKG 323 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 L++ ++SPGGSA E I + ++K+ P+ + ++ AS GY I+ A I A +L Sbjct: 324 LVLRINSPGGSALESEKIHQKLKKL--DVPIYISMGDVCASGGYYIASAGKKIFADSMTL 381 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIGV+ YP + L+K+ V+I+ + + F ++ ++ + + ++ Y Sbjct: 382 TGSIGVVLMYPELSETLNKIDVNIEGFEKGKGFDIFNIFETLSEESKEKIIHTMNEVYSE 441 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR- 247 F V +R + ++ ++ GR+W G+EA + LID +G E+ +++ + + Sbjct: 442 FKSHVIAAREMSEEELEKIAGGRVWLGSEAVNINLIDEIGSLEKSVETMVKDLKLEKYKV 501 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 +I + D+K IS LED I M+ + L+ Sbjct: 502 EIIELKKSLKETLTDIKAPLISEELEDKIRFMQNNVNRILYY 543 Score = 61.2 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 83/222 (37%), Gaps = 6/222 (2%) Query: 41 IAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI 100 I I +I ++++ ++ ++ D + +I+ + E + ++ K ++ Sbjct: 61 IEINSKI-SFYDVLQGLKNLTTDKNIEKIIIDVDKLNLPLAKWEELSEIFDEIGKNKELV 119 Query: 101 TEVHEMAASAGYLISCASNIIVAA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 AS + + S V G ++ PY K FL K G+ + + Sbjct: 120 AIGTFFDERKYRYAIIASKVFMLNTRQSTVCFRGYEYKEPYWKSFLAKFGIKMNILHIGD 179 Query: 160 MKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 K E +++P+ Q + ++ +S + F++ V R + + +L+ I+ G + Sbjct: 180 YKVAGENYSHDKMSPEKKQSILNIKESLFRNFIKSVENKRGVNIEN-EILNGDFIFVGTD 238 Query: 218 -AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 A + LID V EE+ + V Sbjct: 239 KALESKLIDGVADYEEIGINYKEDTVSFEDYLSIYKEKKNKS 280 >gi|223936754|ref|ZP_03628664.1| signal peptide peptidase SppA, 36K type [bacterium Ellin514] gi|223894605|gb|EEF61056.1| signal peptide peptidase SppA, 36K type [bacterium Ellin514] Length = 354 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 75/270 (27%), Positives = 118/270 (43%), Gaps = 27/270 (10%) Query: 30 HVEDNSPHVARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGS 79 D +A I + G I + E++ R DD A+I+ ++SPGG Sbjct: 59 RDNDAENKIAVIDVEGVIAGGASEQGSIGMVSSIKEQLRRAKADDLVKAVILRVNSPGGE 118 Query: 80 AYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 A + I AI K + ++KPV+ + +AAS GY +S + IVA E ++ GSIGV+ Sbjct: 119 VLASDEIANAITKFRTESKKPVVVSMGSLAASGGYYVSAPCDWIVANELTITGSIGVIMH 178 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAE---PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + LDK+GV + KS K EV P+ +M+Q ++D +++ F +V Sbjct: 179 GFNYRSLLDKVGVRPEVYKSGKFKDMLSGTKSPEEVLPEERKMVQALIDETFNKFKDVVR 238 Query: 195 ESRNIPYD---------KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD-Q 244 RN Y +DGRI +G EA+K+G +D VG E LG + Sbjct: 239 SGRNAAYKAHQGRKLSSDWEDYADGRILSGKEAEKLGFVDQVGDLEVAVTKAEELGHVSK 298 Query: 245 SIRKIKDWNPP--KNYWFCDLKNLSISSLL 272 + + P + F + S Sbjct: 299 DQANLIQYQPLFDLSNLFRLFGESNAKSAT 328 >gi|315634116|ref|ZP_07889405.1| signal peptide peptidase SppA [Aggregatibacter segnis ATCC 33393] gi|315477366|gb|EFU68109.1| signal peptide peptidase SppA [Aggregatibacter segnis ATCC 33393] Length = 628 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 112/236 (47%), Gaps = 11/236 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSL 73 + + + +A + + G I D + + + + D +++ + Sbjct: 314 LASLPDRLIGETDNKIAVVNVEGAIVDGESDEENAGGDTIAMLLRQAHDDKDVKGVVLRV 373 Query: 74 SSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 +SPGGSA+A E I + + ++ KPV+ + MAAS GY IS ++ IVA + ++ GSI Sbjct: 374 NSPGGSAFASEIIRQEVTHLQKAGKPVVVSMGGMAASGGYWISSTADYIVADKNTITGSI 433 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 G+ P + + K+GVS VK+S + S ++ + ++Q ++ Y F+ Sbjct: 434 GIFAVLPTFENTIKKIGVSADGVKTSDLALGSLL-SPLSAELNDVLQLEIEHGYDQFLTK 492 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 VSE R++ + ++ G++W G+EA L+D +G + L ++ + Sbjct: 493 VSEGRHLTKAQVDKVAQGQVWLGSEALAHKLVDELGNLDTALGKAMELVNERRAEQ 548 Score = 79.7 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 54/310 (17%), Positives = 111/310 (35%), Gaps = 46/310 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA-------RIAIRGQIEDSQE- 52 + F+ + + V L V L + F+ + V + + G + D+++ Sbjct: 15 LNFI-RDLVMNIVFLIFVLLALSVFTLIVGADKQEKVVLKGDQGALLLQLDGYLADNRDA 73 Query: 53 ------------------------LIERIERISRDDSATALIVSLSSPGGSAYAG-EAIF 87 +I I+ ++DD L++ L+ G E + Sbjct: 74 QSSFKSMLKELDNQRIAQQYSTFDVIYAIDAAAQDDKVKGLVLDLNYFQGGDLPSLEYVG 133 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 AI+ K+ + + + Y ++ ++ I V G+ + Y K LDK Sbjct: 134 EAIENFKDSGKQVIAYSDSYNQSQYFLASYADEIYMNPIGSVSIEGLAQETLYYKEMLDK 193 Query: 148 LGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204 L V+ + K+ PF ++++P+A +Q +++ + + V+ +R+IP Sbjct: 194 LDVNPHVFRVGTYKSAVEPFLRNDMSPEARANLQRWLNTMWENYTAQVAINRDIPKALVT 253 Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI--RKIKDWNPP 255 L + + A A K LI V + ++ + L AL + K D+ Sbjct: 254 PTANTYLTELKALKGDSTAYAVKRKLITDVLDRFDLNRKLTALFGEDKEHQPKTVDFETY 313 Query: 256 KNYWFCDLKN 265 L Sbjct: 314 LASLPDRLIG 323 >gi|150402249|ref|YP_001329543.1| signal peptide peptidase SppA, 36K type [Methanococcus maripaludis C7] gi|150033279|gb|ABR65392.1| signal peptide peptidase SppA, 36K type [Methanococcus maripaludis C7] Length = 307 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 69/253 (27%), Positives = 130/253 (51%), Gaps = 14/253 (5%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------ELIERIE 58 V L ++ V + +S ++A I I G I + IE I+ Sbjct: 11 VFLVIILFLVGFILLLPGDGISSKNIALINIDGTITSQTSETGLFSEFEPSVNDYIEWID 70 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 +D + A+I+ ++SPGG A E + R I++ K V+ + M SA Y + ++ Sbjct: 71 DAEKDSNIKAIIIKINSPGGEVIASEKLSRKIKEASEEKVVVAYIETMGTSAAYQAASST 130 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I+A + +LVG+IGV + + ++KLG+++ ++KS K SP + + +M+ Sbjct: 131 DYILAEKQALVGNIGVRMEILHYYGLMEKLGINVTTIKSGTYKDIMSPTRPMTEEEQKMI 190 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 + +VD SY+ FV V+E+RN+ ++TL ++DG+I++G +A+KVGL+D+ G + + Sbjct: 191 ESIVDESYYEFVSWVAENRNMTINETLEVADGKIYSGIQAEKVGLVDMTGTEGDAIDIAS 250 Query: 239 ALGVDQSIRKIKD 251 + + Sbjct: 251 KMANITNPEVYVY 263 >gi|328954249|ref|YP_004371583.1| signal peptide peptidase SppA, 36K type [Desulfobacca acetoxidans DSM 11109] gi|328454573|gb|AEB10402.1| signal peptide peptidase SppA, 36K type [Desulfobacca acetoxidans DSM 11109] Length = 338 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 119/243 (48%), Gaps = 2/243 (0%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASA 110 L E +++ + D AL+V L SPGG+ A + I+ +Q+ K + P++ V +AAS Sbjct: 91 LKEELQKAAADRRLKALVVRLHSPGGTVAAADLIYHELQQFKQQHRLPLVVSVLGLAASG 150 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 GY ++ A+++IVA TSL+GSIGV+ +K L++ GV + VK+ +K SPF Sbjct: 151 GYYLAQAADVIVAQPTSLIGSIGVIALKFNLKGLLNRFGVETELVKTGRLKDLWSPFRPA 210 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++MQ ++D + FV +V+ RN L DGR++T +A + L+D +G Sbjct: 211 TAEEARIMQALLDDFHRRFVAVVAAGRNFDPATAQRLGDGRLFTATQALDLNLVDQLGYL 270 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 ++ + L ++ R I + L P+ + + + Sbjct: 271 DDAFNRAKELAGIETARIIMYHTADSYRGNVYATPMPQQGLGVLPDPVSPTLALPQFYYL 330 Query: 291 WNP 293 W P Sbjct: 331 WWP 333 >gi|257452656|ref|ZP_05617955.1| protease IV [Fusobacterium sp. 3_1_5R] gi|317059195|ref|ZP_07923680.1| protease IV [Fusobacterium sp. 3_1_5R] gi|313684871|gb|EFS21706.1| protease IV [Fusobacterium sp. 3_1_5R] Length = 564 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 66/268 (24%), Positives = 122/268 (45%), Gaps = 9/268 (3%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPG 77 + YFS ++A + + G IED ++ ++ I +D + +I+ ++SPG Sbjct: 284 IISIQEYFSLVKMKTRPKNYLALLNLEGTIEDETLFLDEVKAIQKDQNVKGIILRINSPG 343 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 GSA + ++ A++K++ + PV + AAS GY ++ A I A+ S+ GSIGV+ Sbjct: 344 GSALVADTMYHAVKKLREKIPVYVSISGTAASGGYYVAAAGEKIFASPLSVTGSIGVVSM 403 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P K V+ +S+ S ++ + +++ Y F+ +VS +R Sbjct: 404 IPNFSNLEKKANVTTESISKGKYADLYSYLQPLSEENYNRIREGNLGVYQDFLEVVSSNR 463 Query: 198 NIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK------ 250 NI D L+ GR+W G EAK+ GLID +GG E +L ++ ++ Sbjct: 464 NIKKDFLDKNLAQGRVWLGIEAKENGLIDELGGLEATIYALEQDKKLGTLPILQVSKNDV 523 Query: 251 --DWNPPKNYWFCDLKNLSISSLLEDTI 276 + + L + + +D + Sbjct: 524 FGQYLGKYRKFLSVLPSSMQQKVPKDRL 551 Score = 56.5 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 104/278 (37%), Gaps = 35/278 (12%) Query: 6 KKIKTRYV--MLSLVTLTVVYFSWSSHVED----------------NSPHVARIAIRGQI 47 +++ + ++ +LSL+ L +V ++ S++ +SP I I + Sbjct: 17 REVCSFFIKLVLSLILLAIVVGTFISYISKENTTEIKQGSYVLLRASSPLSEHIPIPDPL 76 Query: 48 EDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 + E++ ++ I +D +++ + E I +QK++ + Sbjct: 77 SLQEKHMTFFEVLYALDSIRQDQRIQGVLLDADFLSWNKAQLEEIGNKLQKLEEEGKKVI 136 Query: 102 EVHEMAASAGYLISCASNIIVAA--ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 + Y ++ + IV + ++ Y K LD+ GVSI + Sbjct: 137 TTLQEVNRNNYFLASYTKEIVMTPIHAASSNISPYHYEELYWKNLLDRFGVSINVIPIGD 196 Query: 160 MKAEP--SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA- 216 K+ S+++ + + M ++D SY + + ++ +R + + + + G Sbjct: 197 YKSYMENYSHSQMSKEFRENMTRLLDKSYDYSIEAIANNRKLEKNTLKAWIENGEFMGTS 256 Query: 217 --EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 + GLI + E + D I I+++ Sbjct: 257 FPTLFEKGLI----TKGEYPNRIRDEIGDDKIISIQEY 290 >gi|331091470|ref|ZP_08340308.1| hypothetical protein HMPREF9477_00951 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404026|gb|EGG83576.1| hypothetical protein HMPREF9477_00951 [Lachnospiraceae bacterium 2_1_46FAA] Length = 327 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 62/255 (24%), Positives = 116/255 (45%), Gaps = 25/255 (9%) Query: 34 NSPHVARIAIRGQIEDSQ---------------ELIERIERISRDDSATALIVSLSSPGG 78 N +V + + G I++ + +E I+R+ D S +++ + SPGG Sbjct: 52 NREYVGVVNVVGTIQEQTTSDGIFDTSEGYQHLDTLEYIDRMKEDSSNKGILLRVDSPGG 111 Query: 79 SAYAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 + Y E ++ +++ + T + AAS GY IS S+ I A + GSIGV+ Sbjct: 112 TVYESEELYLKLKEYQKETNRPVWTYMEHYAASGGYYISAPSDKIYANPNTTTGSIGVII 171 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + +KLG+ S+ S K S++N + + Q +VD SY FV +V++ Sbjct: 172 SGFDMTGLYEKLGIRSYSITSGKNKD----MSQMNEEQTAIYQSIVDESYGRFVEIVADG 227 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R + ++ L+DGRI++ +AK GL+D +G +++ + + + + + P Sbjct: 228 RKMSEEEVRKLADGRIYSAKQAKANGLVDEIGLYDDMKKDMSKEIGE----NVIFYEPST 283 Query: 257 NYWFCDLKNLSISSL 271 + SL Sbjct: 284 EPSMLASFFGKLESL 298 >gi|240950308|ref|ZP_04754583.1| protease IV, signal peptide peptidase [Actinobacillus minor NM305] gi|240295210|gb|EER46018.1| protease IV, signal peptide peptidase [Actinobacillus minor NM305] Length = 622 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 69/267 (25%), Positives = 123/267 (46%), Gaps = 15/267 (5%) Query: 33 DNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 +A I I G+I + LI +++R+ +D + LI+ ++SPGGSA A Sbjct: 323 KAPNKIAVINIEGEITMGESLEDTAGADTLIRQLQRVRQDKTVRGLILRINSPGGSALAS 382 Query: 84 EAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + ++ ++ PV++ + MAAS GY I+ S+ IVA +L GSIG+ + Sbjct: 383 ELIRQEVEAIQQAGIPVVSSMGGMAASGGYWIAATSDAIVADPNTLTGSIGIFGVLFNFE 442 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LGV + +SP+ ++ +++Q V+ Y F+ LVS R + Sbjct: 443 KTAQNLGVREDGISTSPLAEISGL-KPLSSHQSELIQMSVEQGYREFLDLVSRGRKMDLA 501 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL----GVDQSIRKIKDWNPPKNY 258 K ++ G++W G +A+ +GL+D +G ++ L L +Q+ +I+ + P Sbjct: 502 KVDQIAQGQVWLGQKAQSLGLVDQLGNFDDTLALLGNLINRKLKEQNKPEIETFTPQWFT 561 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQ 285 + IS L L + Sbjct: 562 EQDESLFGEISRSLNAKAKLNLAGWLN 588 Score = 76.6 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 40/290 (13%), Positives = 94/290 (32%), Gaps = 43/290 (14%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV-------ARIAIRGQIEDSQ--------- 51 + +++ V +V + + + S + + + G + D++ Sbjct: 20 MSLFFILFIFVAAAIVGLVNTFNAKQPSDALVHFDKGALILDLNGYLADNREEYADFYRL 79 Query: 52 ----------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQKVK 94 ++++ ++ D T L++ L G Y + + I K Sbjct: 80 IESEMGNEQPKKYSTFDIVDALKNAQTDPRITGLVLELDKFEGGDYPSLTYLGKGITAFK 139 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + + + Y ++ ++ I V G+ + Y K DK+ Sbjct: 140 TSGKPVIAIGSSYGQSQYYLASFADQIYLNRAGAVELQGLNYSNLYFKSLFDKIEAKPYI 199 Query: 155 VKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 + K+ P E++ +A Q + ++ + + ++++R I K L D + Sbjct: 200 FRVGTYKSAVEPLIRDEMSEEAKQNAKGWLEPMWKNLQQGIADNRQIDVGKILPEIDRLL 259 Query: 213 WTGAE--------AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + A + GLI+ V + E+ Q L K Sbjct: 260 ALRKQHKGNEATFALQQGLINEVKTRAEMRQLLVEKFGADEENDFKSIRY 309 >gi|257076483|ref|ZP_05570844.1| putative signal peptide peptidase SppA [Ferroplasma acidarmanus fer1] Length = 239 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 117/237 (49%), Gaps = 6/237 (2%) Query: 37 HVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 +++ + +G I S + + I + + AL++ ++S GG A A E ++ + K+ Sbjct: 2 YISVLNFKGTITGSSPGTYMPALRYIEKKNKVKALLLIINSGGGDANATEILYNQLMKIS 61 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 ++KPV + + AS Y ++C++ I A TSLVGSIGV+ P FLD LG+ ++ Sbjct: 62 SKKPVYALIEGIGASGAYWLACSAEKIFAMRTSLVGSIGVISMSPDFSEFLDTLGIKMRI 121 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 K K SPF + + + +++ Y F V + RN+ D ++ G +++ Sbjct: 122 NKVGKYKDINSPFRPMTEEENAIYNNIMKDVYSVFREEVKKRRNLGEDIMEEIATGLVFS 181 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 +AKK GLID + E V L A SI+ + PK + L ++S ++ Sbjct: 182 AEQAKKNGLIDGIANLETVVDELKAKTGTNSIKNL----TPKRPFISRLMSMSFEAI 234 >gi|134096734|ref|YP_001102395.1| signal peptide peptidase [Saccharopolyspora erythraea NRRL 2338] gi|291008456|ref|ZP_06566429.1| signal peptide peptidase [Saccharopolyspora erythraea NRRL 2338] gi|133909357|emb|CAL99469.1| possible signal peptide peptidase [Saccharopolyspora erythraea NRRL 2338] Length = 298 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 61/275 (22%), Positives = 117/275 (42%), Gaps = 20/275 (7%) Query: 29 SHVEDNSPHVARIAIRGQIE-----------DSQELIERIERISRDDSATALIVSLSSPG 77 + P VA + + G I +Q + R D +A+++S++SPG Sbjct: 26 GEKAERGPVVAVVKLHGVITPTPSPVSRSTISAQTTESALTRAFGHDRLSAVVLSINSPG 85 Query: 78 GSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 G+ + I+++ + K PV+ ++AAS GY ++CA++ I A +TS+VGS+GV+ Sbjct: 86 GAPTQSALVADRIRELADEKKVPVLAFCEDVAASGGYWLACAADEIHAHQTSMVGSVGVV 145 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 LD+ GV + + K PFS V+ + + + F + V + Sbjct: 146 SATFGFNGLLDRFGVERRVYTAGDHKVRLDPFSPEKEDDVRWLHGLQAELHDQFQQWVRD 205 Query: 196 SRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 R L G +++GA+A ++GL+D VG + + + + P Sbjct: 206 RRGERLKGTDEELFSGEVYSGAKALELGLVDGVGSLRGIVRRKF------PDAHLVTVEP 259 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 K S+ L +++ + + +W+ Sbjct: 260 RKPLLAKLGVGSPASARLGGVGAVVEALEHRAMWS 294 >gi|242062658|ref|XP_002452618.1| hypothetical protein SORBIDRAFT_04g029200 [Sorghum bicolor] gi|241932449|gb|EES05594.1| hypothetical protein SORBIDRAFT_04g029200 [Sorghum bicolor] Length = 672 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 62/259 (23%), Positives = 120/259 (46%), Gaps = 16/259 (6%) Query: 32 EDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSLSSPGG 78 + +A I G I +++LIE+I + + A+I+ + SPGG Sbjct: 365 QGGGEQIAIIRASGSITRTRSPLSAPGSGIIAEQLIEKIRTVRESEKYKAVILRIDSPGG 424 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A A + ++R I+ + N KPV+ + ++AAS GY ++ A+ +IVA + +L GSIGV+ Sbjct: 425 DALASDLMWREIRLLANSKPVVASMSDVAASGGYYMAMAAPVIVAEKLTLTGSIGVVTGK 484 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSP-FSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 ++ F +++ + + + + + P ++ + ++Y F + SR Sbjct: 485 FCLQKFYERIDFNKEILSKGRYAELNAADQRPLRPDEAELFEKSAQNAYALFRDKAAMSR 544 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--KDWNPP 255 ++ D+ +++ GR+W+G +A GL+D VGG + +KI + + P Sbjct: 545 SMSVDQMEIVAQGRVWSGHDAFSRGLVDSVGGLSQALAIAKQKANIPKDKKIQLVEVSKP 604 Query: 256 KNYWFCDLKNLSISSLLED 274 L + S L D Sbjct: 605 SPSLPEILSGIGGSLLGVD 623 Score = 81.6 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 34/271 (12%), Positives = 93/271 (34%), Gaps = 15/271 (5%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSA 66 + + + V + +RG+I D ++ E + + D Sbjct: 102 LAVKLRMLVAPPWQRVRKGSVLNMKLRGEISDQLKTRFSSGLSLPQICENFVKAAYDPRI 161 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 + + + + + I R I K + + Y ++CA + A + Sbjct: 162 SGIYLHIEPLRCGWAKVDEIRRHIVDFKKSGKFVVGYMPVCGEKEYYLACACGELYAPPS 221 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDS 184 + V G+ +++ L+K+G+ + + K+ + ++ + +M+ ++D+ Sbjct: 222 AYVALFGLTVGQTFLRGVLEKVGIEPEIQRIGKYKSAGDQLARKSMSNEVREMLATLLDN 281 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 Y ++ +S + ++ + ++ A K+ G I + +EV L + Sbjct: 282 IYGNWLETISSTLGKKKEEIEGFINSGVYQVARLKEEGWITDLLYDDEVMTLLKERVGQK 341 Query: 245 SIRKI--KDWNPPKNYWFCDLKNLSISSLLE 273 + + D++ L + Sbjct: 342 DKKSLRMVDYSKYSRVSKQTLGLQGGGEQIA 372 >gi|126696719|ref|YP_001091605.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus marinus str. MIT 9301] gi|126543762|gb|ABO18004.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus marinus str. MIT 9301] Length = 269 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 74/264 (28%), Positives = 134/264 (50%), Gaps = 5/264 (1%) Query: 33 DNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + +ARI I I S +++ +++I D ALIV + SPGG+ + I+ AI Sbjct: 8 KSKKRMARIVIDEPITSSTRVSVLKALKQI-EDREFPALIVRIDSPGGTVGDSQEIYSAI 66 Query: 91 QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++KN+ VI ++AS G I AS+ IVA ++ GSIGV+ + + LDK+G Sbjct: 67 KRLKNKGCKVIASFGNISASGGVYIGVASDKIVANPGTITGSIGVIIRGNNLSELLDKVG 126 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + ++VKS K SP ++ + +++Q ++D SY F V++ RN+P ++ +D Sbjct: 127 IKFETVKSGVFKDILSPDKPLSEEGRRLLQGLIDESYKQFTEAVADGRNLPVEEVRKFAD 186 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 GRI+TG +AK++GL+D VG + + + + + K + + Sbjct: 187 GRIFTGTQAKELGLVDEVGDEFVARELAAEMVNIDPKIQPLTFGKKKKKILGLIPGSKMI 246 Query: 270 SLLEDTIPLMKQTKVQGLWAVWNP 293 + + I + + LW ++ P Sbjct: 247 EKIINNIFFEFDSSNKVLW-LYKP 269 >gi|94499597|ref|ZP_01306134.1| Periplasmic serine protease (ClpP class) [Oceanobacter sp. RED65] gi|94428351|gb|EAT13324.1| Periplasmic serine protease (ClpP class) [Oceanobacter sp. RED65] Length = 322 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 128/291 (43%), Gaps = 15/291 (5%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-----LIERIE 58 + K+ T + + + + + SS + + A + +RG I D +E ++ + Sbjct: 37 IFFKLLTFVYLFAAILIFMPSDVDSSKLAASGKFTALVEVRGVIADGEEASADIIVTGLR 96 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISC 116 + A A+I+ ++SPGGS ++ I ++K ++KPV + ++ AS Y ++ Sbjct: 97 NAFEAEGAQAVILRINSPGGSPVQSGYVYDEIMRLKELHQKPVYAVISDLGASGAYYMAA 156 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 A++ I A + SLVGSIGV+ +DKLGV + + KA PFS ++ K Q Sbjct: 157 AADEIYADKASLVGSIGVVGSGFGFVDAMDKLGVERRLFTAGEHKAFLDPFSPLDKKEEQ 216 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 + V+ +++ F+ V + R L G +WTG +A +GL+D +G V + Sbjct: 217 FWEQVLSTTHDQFIEQVKKGRGDRLVDNDKLFSGLVWTGEQALGLGLVDGLGSSSYVARE 276 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 L I D+ P + + + I M G Sbjct: 277 LVG------AEDIVDFTPQPTPFEALVGRFGTQ--IGKGIASMMGLNGMGF 319 >gi|167761166|ref|ZP_02433293.1| hypothetical protein CLOSCI_03571 [Clostridium scindens ATCC 35704] gi|167660832|gb|EDS04962.1| hypothetical protein CLOSCI_03571 [Clostridium scindens ATCC 35704] Length = 325 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 63/252 (25%), Positives = 120/252 (47%), Gaps = 20/252 (7%) Query: 35 SPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSA 80 S ++A + + G I++ Q +E I+ + D + +++ + SPGG+ Sbjct: 53 SDYIAIVRVEGTIQEQASTGIFDIPEGYQHQTTMEYIDDLMEDSNNKGILLYVDSPGGTV 112 Query: 81 YAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 Y E ++ ++ K +PV + AAS GY++S AS+ I A ++ GSIGV+ Sbjct: 113 YESEELYLKLKDYKEATGRPVWDYMAHYAASGGYMVSMASDKIYANSNTVTGSIGVIMSG 172 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + +KLG+ S+ S K S++ + + + Q+ VD Y+ FV +V+E R Sbjct: 173 FDMTGLYEKLGIRYFSITSGEYKDS----SQMTDEQMAIYQEQVDEYYNKFVSIVAEGRG 228 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + + L+DGR +T +A GLID + E++ ++ + +++ + Sbjct: 229 MSEEAVRGLADGRTYTAEQAIDNGLIDSISSFEDMQAAMSEELGVNNYYELEGPSGVFAS 288 Query: 259 WFCDLKNLSISS 270 F +K+L S Sbjct: 289 LFAQVKDLIPKS 300 >gi|305663247|ref|YP_003859535.1| signal peptide peptidase SppA, 36K type [Ignisphaera aggregans DSM 17230] gi|304377816|gb|ADM27655.1| signal peptide peptidase SppA, 36K type [Ignisphaera aggregans DSM 17230] Length = 319 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 69/289 (23%), Positives = 125/289 (43%), Gaps = 16/289 (5%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-----------EDSQELIERIERISRDD 64 + L ++ S S +P++A I + G I + + E + +I D Sbjct: 16 LTIALQLLIPSPLSIFTPPTPYIALIELHGTIDYEQPLFSGSTITPKTVSELVNKILSDP 75 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 A A++V ++SPGG+ I+ ++K+ + K VI + +AAS GYLI+ + I+A Sbjct: 76 YAKAVVVVVNSPGGTMA-AFEIYSILKKLSSEKIVIVYITNIAASGGYLIALPAREIIAN 134 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 ++ +GS+G + V L KLG+++ VKS +K S + E ++ ++ +VDS Sbjct: 135 PSATIGSVGAIATIINVHNLLQKLGINVTIVKSGELKDVGSMYRETTETDIETIKSLVDS 194 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 + F+ V E R + ++ EAK++GLID +G + L Sbjct: 195 IANEFIEKVIECRGNKIKNISEIRRAGVYPAREAKELGLIDDIGDLDYAINRARQLAGLP 254 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 IK P K + + P + + + +W P Sbjct: 255 PTTPIKRIEPTKPSLLDIILG----RVETQVTPTPRTPRSIEILLIWPP 299 >gi|322371200|ref|ZP_08045752.1| signal peptide peptidase SppA, 36K type [Haladaptatus paucihalophilus DX253] gi|320549190|gb|EFW90852.1| signal peptide peptidase SppA, 36K type [Haladaptatus paucihalophilus DX253] Length = 341 Score = 122 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 59/271 (21%), Positives = 124/271 (45%), Gaps = 26/271 (9%) Query: 38 VARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 VA +A+ G I + +++ +I+R + D++A L++ L++PGG E Sbjct: 74 VAEVAVEGPIRRDGGGSIPSPAGTSTDDIVTQIDRANDDENANGLLLRLNTPGGEVVPSE 133 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I A ++ P + ++ AS GY I+ + + A E SLVGSIGV+ Sbjct: 134 DIRLAAERF--DGPTVAYATDVCASGGYWIASGCDELFAREASLVGSIGVIGSRVNAAEL 191 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 +++G+S + + + K P E++ +Q ++D Y FV V+ R++ + Sbjct: 192 AERVGLSYERLAAGKYKDAGIPLKELDGDERDYLQGIIDGMYDDFVERVTTGRDLDPETV 251 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD-- 262 ++ R++ G +A+++GL+D +G +E+V L + ++++ P + Sbjct: 252 RE-TEARVYLGDDAERIGLVDELGTREDVEARLAERLGVPEV-SVREFEPSQPLRRRLNL 309 Query: 263 -------LKNLSISSLLEDTIPLMKQTKVQG 286 I+S++ D ++ + + Sbjct: 310 GARGIAYSFGAGIASVVGDEKGDVEGFEFRA 340 >gi|45602163|gb|AAS71641.1| PfaP [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 242 Score = 122 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 117/217 (53%), Gaps = 2/217 (0%) Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 ++++ I ++ + +++ ++SPGG+ A + ++ + +++ + ++ + +MAAS GY Sbjct: 1 MQKLRDIEQNPNIKGILIEINSPGGTVGASQEVYNELMRLRKTRKIVVSMKDMAASGGYY 60 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 I+ A++ I A ++ GSIGV+ P +K LD+ GV +++ K K S F + P+ Sbjct: 61 IASAADKIFALSGTITGSIGVIAMAPNIKGLLDRYGVKMRTYKEGKYKDSLSLFRDSTPE 120 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 +M+Q ++ +Y+ F++ V++ RN L++G+I++G +A + L+D +GG++E Sbjct: 121 EDEMIQKMLSDTYNEFIQDVAKGRNQTVKSVQNLAEGKIYSGQDAFRNKLVDEIGGRKEA 180 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270 + L L + + ++ + L Sbjct: 181 LEELSRLCQYDGEIPL--YEEDESPFDRLFMMLGSKM 215 >gi|332306361|ref|YP_004434212.1| signal peptide peptidase SppA, 67K type [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173690|gb|AEE22944.1| signal peptide peptidase SppA, 67K type [Glaciecola agarilytica 4H-3-7+YE-5] Length = 619 Score = 122 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 126/286 (44%), Gaps = 12/286 (4%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDS 65 ++ + H++ N V + +G I + + DDS Sbjct: 308 ITFKHYLQIVNPPLPHLDTNVDKVGVVVAKGTILNGDQKPGTVGGDSTANLLRKARLDDS 367 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAA 124 ++++ + SPGGSA+A E I + I+ +K KPV+ + AAS GY IS +++ I AA Sbjct: 368 IKSVVLYVDSPGGSAFASEIIRQEIENLKAAGKPVVALMSTYAASGGYWISASADEIWAA 427 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 +++ GSIG+ + + LD LGV V ++ ++PK Q++Q ++ Sbjct: 428 PSTITGSIGIFGMFVSFENTLDYLGVHTDGVGTTDFAG-MGITRGIDPKMGQVLQRSIEH 486 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 Y F+ LV++ R++ + ++ GR+W G A + L+D +G ++ + L Sbjct: 487 GYDQFISLVADERHMSKEDVDSIAQGRVWIGETALSLNLVDHLGYIDDAVSAAAQLADLS 546 Query: 245 S-IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + + F + S +L T +K+ L + Sbjct: 547 EYDVTYVERSLNSSELFWKEFFSNASVMLAKTQFAQSDSKLMSLIS 592 Score = 103 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 97/285 (34%), Gaps = 37/285 (12%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------- 50 + F K ++ + + + F + + + +RG I Sbjct: 19 LNFSRKLFFNIIFLVIAIAIISLIFKDNGQIGVKQDSALVLNLRGDIVIQKHAIDPFEAF 78 Query: 51 ----------------QELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93 Q+++ ++ +D AL++ L G E I +AI Sbjct: 79 MQEALGQENEKPEVLLQDILLTLDNAKQDQRIKALVLDLQELNGAGLDKLEQIAQAIDDF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + + + + Y I+ ++ + + G Y K LDK+ + Sbjct: 139 KLSEKPVYAIGDYYTQEQYYIASHADHVYMNPMGWMLFEGYGRFGMYYKSALDKIKATTH 198 Query: 154 SVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 K K+ P +++ A + + +++ + + V+E+R + D D Sbjct: 199 VFKVGTYKSAVEPLIRDDMSQAAKEANKAWLNAMWSQYKNNVAEARGLSADNFDEKVDEF 258 Query: 212 IW--------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + A + G +D + +E+V Q L ++ ++ ++ Sbjct: 259 MVKFEDVNGDFAQYALENGWVDGLKTREQVLQELASVVGEEDSKR 303 >gi|14520806|ref|NP_126281.1| putative protease [Pyrococcus abyssi GE5] gi|5458022|emb|CAB49512.1| Putative protease [Pyrococcus abyssi GE5] Length = 335 Score = 122 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 56/232 (24%), Positives = 112/232 (48%), Gaps = 3/232 (1%) Query: 21 TVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGG 78 + S +V + +A + I G I+ S +I+ I I +D+ +++ + SPGG Sbjct: 74 FLRSLLESENVTTANATIAVLPIIGPIDSSSALGIIKAIREIRGNDTIKGVLLWIESPGG 133 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 I+ ++K+ KP++ V A S Y I+CA+ I+A S VGSIGV++ + Sbjct: 134 YVGPVREIYNELKKLGYLKPIVAYVSGYAYSGAYYIACAAREIIAEPLSEVGSIGVIYVH 193 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + + G+ ++ K+ P K + + + P+ ++++ + + ++ F+ +VSE RN Sbjct: 194 FNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTYFNDFLEVVSEGRN 253 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 + ++T + GR W + L+D +G + + L L + I Sbjct: 254 MTINETKKFATGRAWFAKD-VNGTLVDKLGDFDVALKELLKLIGAKKANVII 304 >gi|254527035|ref|ZP_05139087.1| signal peptide peptidase SppA, 36K type [Prochlorococcus marinus str. MIT 9202] gi|221538459|gb|EEE40912.1| signal peptide peptidase SppA, 36K type [Prochlorococcus marinus str. MIT 9202] Length = 269 Score = 122 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 73/264 (27%), Positives = 132/264 (50%), Gaps = 5/264 (1%) Query: 33 DNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + +ARI I I S +++ +++I D ALIV + SPGG+ + I+ AI Sbjct: 8 KSKKRMARIVIDEPITSSTRVSVLKALKQI-EDREFPALIVRIDSPGGTVGDSQEIYSAI 66 Query: 91 QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++K++ VI ++AS G I AS+ IVA ++ GSIGV+ + + LDK+G Sbjct: 67 KRLKDKGCKVIASFGNISASGGVYIGVASDKIVANPGTITGSIGVIIRGNNLSELLDKIG 126 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + ++VKS K SP ++ + ++Q ++D SY F V+E RN+P + +D Sbjct: 127 IKFETVKSGVFKDILSPDKPLSEEGRDLLQGLIDESYKQFTEAVAEGRNLPVEDVRKFAD 186 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 GRI+TG +AK +GL+D +G + + + + + K + + Sbjct: 187 GRIFTGTQAKDLGLVDEIGDEFVARELAAKIVNIDPKIQPLTFGKKKKKILGLIPGSRMI 246 Query: 270 SLLEDTIPLMKQTKVQGLWAVWNP 293 + ++I + + LW ++ P Sbjct: 247 EKVINSIFFEFDSSNKVLW-LYKP 269 >gi|281209653|gb|EFA83821.1| hypothetical protein PPL_02889 [Polysphondylium pallidum PN500] Length = 848 Score = 122 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 66/276 (23%), Positives = 115/276 (41%), Gaps = 22/276 (7%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--------------EDSQELIERIERI 60 + L + ++ +A I G I ++ L I Sbjct: 497 IFLTKYLSLTGRLNAPGNSKKNRIAYINAEGAISCGKSLTKMNGGPTIGAESLSLAIRAA 556 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASN 119 D + A+I+ + SPGGS A + I++ K K VI + +AAS GY ISC ++ Sbjct: 557 VLDKTIKAIIIRVDSPGGSYQASCIVHFEIERAKKAGKKVIALMGSVAASGGYFISCNAD 616 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS-------SPMKAEPSPFSEVNP 172 IVA ++ GSIGVL ++ L+K+GVS ++K S + Sbjct: 617 KIVAQHGTITGSIGVLLGKLNIRKPLEKIGVSFDNLKINERDDTVGDNSNLFSSLYNYSE 676 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 + + +D Y F V++ RN+ ++ ++ GR+W+G +A + L+D +GG E Sbjct: 677 AQLNTLNHELDEIYGDFKSKVAQGRNLSMEQVEEVARGRVWSGQQAFERKLVDRIGGLNE 736 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 + L K++ P++ L + S Sbjct: 737 AIEETKELLKLGKDDKVELIPFPRDNLIKQLLSSSA 772 Score = 88.9 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 84/197 (42%), Gaps = 8/197 (4%) Query: 51 QELIERIERISRDDSATALIVSLSS-PGGSAYAGEAIFRAIQKVKNRKPVITEV-----H 104 +++++ I + + D T LI + + S + I A++ ++++ Sbjct: 278 RDIVDGIRKAADDPKVTGLIFRIGTHFAMSFAHIQEIRDAVRYMRSKGKKTLFYADSFGE 337 Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 A+ Y ++ A I + + + P++K L+KL + + ++ K+ Sbjct: 338 FSNANITYYLASAFETIYMSPVGSLCIVNWGIDAPFIKKTLEKLEIVPEFLRRREFKSAA 397 Query: 165 SPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVG 222 + F+E + P + MQ ++DS ++ +++ RN+ D +T A+A+ + Sbjct: 398 NMFTEEKMTPSERESMQSILDSLFNQMTEGIAQDRNLLVDDVSRYFASGPFTAAKAESLK 457 Query: 223 LIDVVGGQEEVWQSLYA 239 LID + + + + Sbjct: 458 LIDKLAYLPDAYDEIKG 474 >gi|262274575|ref|ZP_06052386.1| protease IV [Grimontia hollisae CIP 101886] gi|262221138|gb|EEY72452.1| protease IV [Grimontia hollisae CIP 101886] Length = 618 Score = 122 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 60/241 (24%), Positives = 110/241 (45%), Gaps = 11/241 (4%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSA 66 S +++ ++ + +A + G I D + +D+ Sbjct: 305 SFNYVSIYDYAPLDFDYPKANQIAVVVASGAIIDGFETEGTIGGDTTAALLRDARLNDAI 364 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAE 125 A+++ + SPGGSA+A E I + +K KPV+ + +AAS GY IS ++N I+A Sbjct: 365 KAVVLRVDSPGGSAFASEVIRNEVDALKKAGKPVVVSMSSVAASGGYWISSSANRILAQP 424 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 T++ GSIG+ + L K GV + ++P + + +MQ +++ Sbjct: 425 TTITGSIGIFGILTTFEDVLAKYGVYNDGIGTTPFAGVGVT-RALPDEISDIMQLGIENG 483 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y F+ LV+ RN+ + ++ GR+WTG +A K GL+D +G ++ L + Sbjct: 484 YQRFIGLVASERNLSLEDVDQVAQGRVWTGYDAMKRGLVDQMGDFDDAIAVAAELAKVEE 543 Query: 246 I 246 Sbjct: 544 Y 544 Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 45/298 (15%), Positives = 101/298 (33%), Gaps = 44/298 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQIEDSQ------ 51 + F + I + LV + V+ + + I G I + + Sbjct: 19 LSFARQLILNILFIAILVGIYFVFTTEHETQTKPIEQPEQALLVDIAGPIVEKRRRIDPY 78 Query: 52 -------------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQ 91 +++++I ++DD +++S S I +AI Sbjct: 79 DFATRNLFGQQMHVENVLYDIVDQIRAGAKDDKINGMVLSLSDMSETSLTKLRYIAKAIN 138 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + K + + + + Y ++ ++ I A V G Y K L+ L V+ Sbjct: 139 EFKATGKPVVAIGDHYNQSQYYLASYADEIFMAPDGAVLLRGYGSYNLYFKELLENLDVT 198 Query: 152 IKSVKSSPMKAEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------ 203 + K+ P++ +++ +A + ++ + FV V+ +RNI Sbjct: 199 THVFRVGTYKSFVEPYTRTDMSEEAREANSVWLNQLWAAFVDDVATNRNIDPAVLTPDAP 258 Query: 204 --TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ-----SIRKIKDWNP 254 L + A+ +GL+D + +++ L + + I D+ P Sbjct: 259 SLIAKLKEAGGDFAKLAQNMGLVDELLTRQQTRLRLADMLGSDGQDSFNYVSIYDYAP 316 >gi|23015704|ref|ZP_00055473.1| COG0616: Periplasmic serine proteases (ClpP class) [Magnetospirillum magnetotacticum MS-1] Length = 560 Score = 122 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 119/272 (43%), Gaps = 17/272 (6%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQI--------------EDSQELIERIERISRDDSAT 67 + ++ +A I+ G I +Q + E DD Sbjct: 282 LADYAGHLDKARGGAKIALISGIGAIHRGESRHGLDGDGDFGAQTVAEAFRDAVDDDKVK 341 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAET 126 A++ + SPGGS A + + + + + KPV+ + AAS GY ++ ++ I+AA Sbjct: 342 AILFRVDSPGGSYTASDTVHHEVARARAAGKPVVVSMGNYAASGGYFVAMGADRIIAAPG 401 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 ++ GSIGV ++ F KLG+S ++ S P+A + ++D Y Sbjct: 402 TITGSIGVFTGKVVLEDFWKKLGISWDQMQRGDNAGIWSANQPFTPQAKARIDALLDHIY 461 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 F S++RN+ + L+ GR+WTGA+AK+ GL+D +GG E L + ++ Sbjct: 462 ADFTGKASQARNLDAARMDKLARGRVWTGADAKESGLVDGLGGWTEALAQLRQVAGLKAD 521 Query: 247 RK--IKDWNPPKNYWFCDLKNLSISSLLEDTI 276 + ++ P+ W ++L + E I Sbjct: 522 EPLSLVEFPRPRKPWEVLAESLGGGGVAERRI 553 Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 84/206 (40%), Gaps = 7/206 (3%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 ++ +E ++R + D T L ++ + + A+ + + E Sbjct: 74 GLRQTVEALDRAALDSRVTGLFATMGHSSLGLAGRQDLRDAVIRFRASGKSAVLFAETMG 133 Query: 109 SA-----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 Y ++ A + + + VG G+ + P++K LD LG+ + K+ Sbjct: 134 EGGSGTLDYYLAAAFSQVWLQPSGDVGLTGLWVESPFIKGTLDLLGMKAQFSGRHEYKSA 193 Query: 164 PSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221 F+E P + + ++DS + ++ +R +P D+ L + +EA Sbjct: 194 IDMFTETGFTPAHRENLGRLLDSWSEQIISGIAANRGLPEDRVRDLMGKGPFLASEALNA 253 Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIR 247 L+D VG +++ W+ + +G D++ Sbjct: 254 KLVDKVGYRDQAWEIVAGIGTDKAED 279 >gi|257466515|ref|ZP_05630826.1| protease IV [Fusobacterium gonidiaformans ATCC 25563] gi|315917670|ref|ZP_07913910.1| protease IV [Fusobacterium gonidiaformans ATCC 25563] gi|313691545|gb|EFS28380.1| protease IV [Fusobacterium gonidiaformans ATCC 25563] Length = 564 Score = 122 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 66/268 (24%), Positives = 121/268 (45%), Gaps = 9/268 (3%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPG 77 + YFS ++A + + G IED ++ ++ I +D + +I+ ++SPG Sbjct: 284 IISIQEYFSLVKMKTRPKNYLALLNLEGTIEDETLFLDEVKAIQKDQNVKGVILRINSPG 343 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 GSA + ++ A++K++ + PV + AAS GY ++ A I A+ S+ GSIGV+ Sbjct: 344 GSALVADTMYHAVKKLREKIPVYVSISGTAASGGYYVAAAGEKIFASPLSVTGSIGVVSM 403 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P K V +S+ S ++ + +++ Y F+ +VS +R Sbjct: 404 IPNFSNLEKKANVVTESISKGKYADLYSYLQPLSEENYNRIREGNLGVYQDFLEVVSSNR 463 Query: 198 NIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK------ 250 NI D L+ GR+W G EAK+ GLID +GG E +L ++ ++ Sbjct: 464 NIKKDFLDKNLAQGRVWLGIEAKENGLIDELGGLEATIYALEQDKKLGTLPILQVSKNDV 523 Query: 251 --DWNPPKNYWFCDLKNLSISSLLEDTI 276 + + L + + +D + Sbjct: 524 FGQYLGKYRKFLSVLPSSMQQKVPKDRL 551 Score = 58.1 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 104/278 (37%), Gaps = 35/278 (12%) Query: 6 KKIKTRYV--MLSLVTLTVVYFSWSSHVED----------------NSPHVARIAIRGQI 47 ++I + ++ +LSL+ L +V ++ S++ +SP I I + Sbjct: 17 REICSFFIKLVLSLILLAIVVGTFISYISKENTTEIKQGSYVLLRASSPLSEHIPIPDPL 76 Query: 48 EDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 + E++ ++ I +D +++ + E I +QK++ + Sbjct: 77 SLQEKHMTFFEVLYALDSIRQDQRIQGVLLDADFLSWNKAQLEEIGNKLQKLEKEGKKVI 136 Query: 102 EVHEMAASAGYLISCASNIIVAA--ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 + Y ++ + IV + ++ Y K LD+ GVSI + Sbjct: 137 TTLQEVNRNNYFLASYTKEIVMTPIHAASSNISPYHYEELYWKNLLDRFGVSINVIPIGD 196 Query: 160 MKAEP--SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA- 216 K+ S+++ + + M ++D SY + + ++ +R + + + + G Sbjct: 197 YKSYMENYSHSQMSKEFRENMTRILDKSYDYSIEAIANNRKLEKNTLKAWIENGEFMGTS 256 Query: 217 --EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 + GLI + E + D I I+++ Sbjct: 257 FPTLFEKGLI----TKGEYPNRIRDEIGDDKIISIQEY 290 >gi|121998030|ref|YP_001002817.1| peptidase S49 [Halorhodospira halophila SL1] gi|121589435|gb|ABM62015.1| peptidase S49 [Halorhodospira halophila SL1] Length = 316 Score = 122 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 58/247 (23%), Positives = 112/247 (45%), Gaps = 18/247 (7%) Query: 35 SPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 PH A + I G I +++I +ER D A +++ ++SPGGSA I++ Sbjct: 59 GPHTAEVRIDGPIMSDSAASAEQVIRGLERAFEADDAAGVVLRINSPGGSAVHARQIYQE 118 Query: 90 IQKVKNRKPVI---TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 I++++ I + ++ S Y ++ A++ I E+S+VGSIGV+ + L+ Sbjct: 119 IRRLREEYEDIPVHAVIEDIGTSGAYYVAAAADQIHVNESSIVGSIGVIMGSFGIGEALE 178 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD---- 202 KLG+ + + KA PF+ + V+ ++ ++D + F+ V + R D Sbjct: 179 KLGIERRVYTAGDDKAFLDPFAPEDEAHVEHVRTMLDDIHGQFIAAVRDGRGEQIDAAGA 238 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L G IWTG ++ GL D +G V + + ++ D+ +++ Sbjct: 239 DEDRLFSGLIWTGQQSLDKGLADEIGSVRSVARDVIG------EEELVDYTARRDFLSQL 292 Query: 263 LKNLSIS 269 + + Sbjct: 293 AERFGTA 299 >gi|241667507|ref|ZP_04755085.1| S49 family peptidase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876053|ref|ZP_05248763.1| peptidase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842074|gb|EET20488.1| peptidase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 307 Score = 122 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 56/282 (19%), Positives = 121/282 (42%), Gaps = 19/282 (6%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP---HVARIAIRGQIEDS-----QE 52 ++ + K + ++ S++ L V+ S + H+ + + G I + + Sbjct: 18 LKDIKSKRRWKFFTRSIIILIVLVIIIPSLFSSSKELTSHIGLVKVDGVIVEDAEANAER 77 Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAAS 109 + + ++ + + +I+ ++SPGGS + I+ ++ ++ + P+ + AS Sbjct: 78 INKSLDDAYSNKAVKGIIIEINSPGGSPVQSDEIYSHMRYLQQKYPNIPMYAVCTNVCAS 137 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 GY I+ + I A + ++VGSIGV+ +DKLG+ ++ S K PFS Sbjct: 138 GGYYIAAGAKEIYANKMTIVGSIGVIGSGFGFTGLMDKLGIERRTYTSGSNKDFLDPFSP 197 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLIDVV 227 P+ ++D ++ F+ V +SR G ++G +A+++GLID Sbjct: 198 ERPEQTAQFNKLLDETHQVFITAVEQSRGDRLKDKAMDTTFSGEPFSGIQAQRMGLIDGF 257 Query: 228 GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 ++ + + + I D+ P ++ L S Sbjct: 258 ASVNQLKRDKF------NNLDIVDYTQPLDFLTAVSNKLGNS 293 >gi|325266561|ref|ZP_08133238.1| signal peptide peptidase SppA [Kingella denitrificans ATCC 33394] gi|324982004|gb|EGC17639.1| signal peptide peptidase SppA [Kingella denitrificans ATCC 33394] Length = 336 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 67/278 (24%), Positives = 115/278 (41%), Gaps = 26/278 (9%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDN---------SPHVARIAIRGQIEDSQEL--I 54 + I +L + + + PH A I + G I + + Sbjct: 45 RNIWRFVALLVFIAFIAGLRDSGTQESEQAAFSAAAARGPHTAVIDLNGTIGGDNRISQV 104 Query: 55 ERIER----ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK---PVITEVHEMA 107 + + + R+ + A+I+ +SPGGS F I+++K PV +M Sbjct: 105 DMLRQGMEAAYRNKNVRAIIIHANSPGGSPVVSNTAFSEIRRIKAEHANIPVYVVAKDMC 164 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 AS Y I+ A++ I A +SLVGSIGV+ ++KLG+ + + K PF Sbjct: 165 ASGCYYIAAAADKIFADPSSLVGSIGVIGSSFDATGLIEKLGIRRRVRIAGDNKGMGDPF 224 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY--DKTLVLSDGRIWTGAEAKKVGLID 225 P+ + Q++++ + F++ V E R + + GRI+TG +AKK GLID Sbjct: 225 VPETPEQQAIWQNMLNQIHGEFIKAVREGRGKRLMEKEFPDMFSGRIFTGIDAKKAGLID 284 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 G V + + + ++ P KN L Sbjct: 285 DFGNVYSVARDVVK------APNLVNYTPEKNDLASLL 316 >gi|260913982|ref|ZP_05920456.1| signal peptide peptidase SppA [Pasteurella dagmatis ATCC 43325] gi|260632069|gb|EEX50246.1| signal peptide peptidase SppA [Pasteurella dagmatis ATCC 43325] Length = 626 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 70/252 (27%), Positives = 122/252 (48%), Gaps = 18/252 (7%) Query: 31 VEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAY 81 + +A + + G I D + + + + D+S A+++ ++SPGGSA+ Sbjct: 322 TSSDKHKIAVVNVEGAIIDGESFEDDVGGDTIARLLRQAKDDESVKAVVLRVNSPGGSAF 381 Query: 82 AGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 A E I + + ++ KPVI + MAAS GY IS ++ IVA + ++ GSIG+ P Sbjct: 382 ASEIIRQEVTHLQKAGKPVIVSMGGMAASGGYWISSTADYIVADKNTITGSIGIFAVLPS 441 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + + K GVS V +SP+ +E S FS ++ + + Q ++ Y F+ LV+E R + Sbjct: 442 FEKTIKKAGVSADGVSTSPL-SELSLFSPLSNELNDVFQLEIEHGYDKFISLVAEGRALD 500 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDWN----- 253 ++ G+IW G EA K L+D +G ++ D + +IKD+ Sbjct: 501 KADVEKVAQGKIWLGQEALKHNLVDQIGTFDDAVDIAIISVNDLLEPDERIKDFGIEWMV 560 Query: 254 PPKNYWFCDLKN 265 + W+ L Sbjct: 561 EKDSSWWNMLIG 572 Score = 70.0 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 90/246 (36%), Gaps = 12/246 (4%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASA 110 +++ I +D+ L+ L+ G E I RAI K K + + Sbjct: 97 DVVYAITNAEKDERIKGLVFDLNFFEGGDLPALEYIGRAISDFKRSKKPVIVFADNYNQK 156 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FS 168 YL++ ++ I V +G+ Q Y K L+ L V+ + K+ P Sbjct: 157 QYLLASYADQIYLNPVGKVSILGMKQQNLYFKSMLNMLDVTTNVFRVGTYKSAVEPLLRD 216 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY--------DKTLVLSDGRIWTGAEAKK 220 +++ A + M+ ++ + +V +V+++R I L + + A K+ Sbjct: 217 DMSEAAKEDMKSWLNQMWTNYVSIVADNRQIEPRAVLPDAKTYVEELRVLKGDSSAYTKQ 276 Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 GLI + V L + + ++K Y ++ S + + ++ Sbjct: 277 RGLITEFADRLTVEDKLIEIFGQTELGELK-MVEFDRYLADLPDRMTSSDKHKIAVVNVE 335 Query: 281 QTKVQG 286 + G Sbjct: 336 GAIIDG 341 >gi|261364052|ref|ZP_05976935.1| signal peptide peptidase SppA [Neisseria mucosa ATCC 25996] gi|288568087|gb|EFC89647.1| signal peptide peptidase SppA [Neisseria mucosa ATCC 25996] Length = 324 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 61/285 (21%), Positives = 116/285 (40%), Gaps = 15/285 (5%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVE-----DNSPHVARIAIRGQIEDS-QELIERIE- 58 + + + ++ ++ + ++F H A I + G+I + ++ + Sbjct: 39 RFWRNFWRIIGVLLIAALWFGSDDGTAGQGLAAGKEHTAVITLEGEIGGGIDDQVKMLRD 98 Query: 59 ---RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGY 112 + +A +++ +SPGGS F I+++ PV +M AS Y Sbjct: 99 SMEAAYSNPNAKGIVIRANSPGGSPVISNTAFNEIRRLKGEHKDIPVYVVAEDMCASGCY 158 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 I+ A++ I A +S+VGSIGV+ V +DKLG+ + + K PF+ P Sbjct: 159 YIAAAADKIYADPSSIVGSIGVIGGGFDVTGLMDKLGIKRRLKTAGSNKGMGDPFTPETP 218 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + ++ ++ F++ V R + GR++TG EAKKVGLID G Sbjct: 219 EQAKIWEAMLSDTHQEFIKAVKLGRGEKLKDKEYPDVFSGRVYTGLEAKKVGLIDDFGSV 278 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 + + + S D+ F + L Sbjct: 279 YSIARDVVKAPELVSYTPEDDFGKFVRRHFGAQVKAEVEKTLSKM 323 >gi|123968906|ref|YP_001009764.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus marinus str. AS9601] gi|123199016|gb|ABM70657.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus marinus str. AS9601] Length = 269 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 72/264 (27%), Positives = 131/264 (49%), Gaps = 5/264 (1%) Query: 33 DNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + +ARI I I S ++ ++++ D ALIV + SPGG+ + I+ AI Sbjct: 8 KSKKRMARIVIDEPITSSTRVSFLKALKQV-EDREFPALIVRIDSPGGTVGDSQEIYSAI 66 Query: 91 QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++K++ VI ++AS G I AS+ IVA ++ GSIGV+ + + LDK+G Sbjct: 67 KRLKDKGCKVIASFGNISASGGVYIGVASDKIVANPGTITGSIGVIIRGNNLSELLDKIG 126 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + ++VKS K SP ++ + ++Q ++D SY F V+E RN+P ++ +D Sbjct: 127 IKFETVKSGVFKDILSPDKPLSEEGRGLLQGLIDESYKQFTEAVAEGRNLPVEEVRKFAD 186 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 GRI+TG +AK++GL+D +G + + + + + K + + Sbjct: 187 GRIFTGTQAKELGLVDKIGDEFVARELAAEMVNIDPKIQPLTFGKKKKKILGLIPGSRVI 246 Query: 270 SLLEDTIPLMKQTKVQGLWAVWNP 293 + I + + LW ++ P Sbjct: 247 EKIIKNIFFEFDSSNKVLW-LYKP 269 >gi|328948927|ref|YP_004366264.1| signal peptide peptidase SppA, 36K type [Treponema succinifaciens DSM 2489] gi|328449251|gb|AEB14967.1| signal peptide peptidase SppA, 36K type [Treponema succinifaciens DSM 2489] Length = 343 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 134/264 (50%), Gaps = 9/264 (3%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDSQE------LIERIERISRDDSATALIVSLSSPG 77 + + ++A++ I+G I +S + ++ IE + D + +++ ++SPG Sbjct: 60 LLGKKENKFPKNEYIAKLFIKGVISESNDSYNQEWILSTIENLQEDTNNRGIVLVINSPG 119 Query: 78 GSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 G Y + +F A++K K + +PV +AAS GY + CA++ I+A SL GSIGV+ Sbjct: 120 GGVYQADEVFLALEKYKKKTERPVYAYFTSLAASGGYYVGCAADYIMANRNSLTGSIGVI 179 Query: 136 -FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 Q+ + ++K G+ ++ S K + + + ++MQ + D Y F +V+ Sbjct: 180 AGQFTDLTGLMEKWGIKSTTIHSGRNKLMGNFNEPMTQEQQEIMQSIADECYEQFTDIVA 239 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 ESR + ++ L+DGRI+T ++AK+ LI+ +G +E+ +++ D + + D++ Sbjct: 240 ESRGLSKEEVYKLADGRIYTASQAKEASLINSIGTLDELIETMQRKEFDFAEYETADFSY 299 Query: 255 PKNYWFCDLKNLSISSLLEDTIPL 278 K + S + ++ + Sbjct: 300 QKEDSIYRMIMGSAKEFKKASLGI 323 >gi|108804065|ref|YP_644002.1| peptidase S49 [Rubrobacter xylanophilus DSM 9941] gi|108765308|gb|ABG04190.1| peptidase S49 [Rubrobacter xylanophilus DSM 9941] Length = 555 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 109/226 (48%), Gaps = 19/226 (8%) Query: 37 HVARIAIRGQIE-------------------DSQELIERIERISRDDSATALIVSLSSPG 77 V +++ G I ++ + + RD A+++ + S G Sbjct: 282 KVGLVSVSGVIVRGRSRSLPAPIPFLGGEQAGAESVAAALRVAERDRRVAAVLLHVESRG 341 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G A A + I+R + +++ KPV+ + AAS GY + A++ IVA +L GSIGV+ Sbjct: 342 GDALASDLIWREVARLRRSKPVVVLMGNFAASGGYYVGVAADRIVARRNTLTGSIGVVLV 401 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P K +LG+ ++++ A P ++ P ++ ++ ++ +Y F + V E R Sbjct: 402 RPVAKELYGRLGLRPEALQRGKNAAILDPATDPGPGELEALRRQMEHAYREFRQRVVEGR 461 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 IP ++ L+ GR+WTG EA++ GL+D GG E + LG Sbjct: 462 GIPQERLEGLAGGRVWTGEEARREGLVDATGGFREALRLAGELGGV 507 Score = 68.9 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 86/188 (45%), Gaps = 3/188 (1%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMA 107 +EL E ++ + D + +++ + A E + + + + V++ + E A Sbjct: 65 SLEELREALDAVLYDGRPSGVVLRVRRLDAGWAALEELRGELARFREAGGRVVSYLREDA 124 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP- 166 S Y ++CA++ + AA + +G G+ + + + L++ G+ + + SP K+ Sbjct: 125 DSRAYYLACAADEVFAAPLAALGITGLRTRVVFAREALERAGLRAEVLAVSPYKSAYDAL 184 Query: 167 -FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 + + +A + ++D + V VS +R +P + L D EA + GL+D Sbjct: 185 ARAGFSREAREQALRLLDGRFSELVGAVSRARGMPEEAVRGLIDRAPLAAREALEAGLLD 244 Query: 226 VVGGQEEV 233 V ++E+ Sbjct: 245 GVCYEDEL 252 >gi|94496302|ref|ZP_01302879.1| signal peptide peptidase SppA, 67K type [Sphingomonas sp. SKA58] gi|94424048|gb|EAT09072.1| signal peptide peptidase SppA, 67K type [Sphingomonas sp. SKA58] Length = 617 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 70/287 (24%), Positives = 123/287 (42%), Gaps = 14/287 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATA 68 + + N+ + + + G I D + + + + + A Sbjct: 283 FAAIDLRSYVKARAPANNGQIGVLTVAGDIVDGEAGPGTAAGDTISDLLLSALDKGNLKA 342 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETS 127 L+V + SPGGS A E I AI + K PV+ + +AAS GY +S ++I A + Sbjct: 343 LVVRVDSPGGSVMASEKIRSAIMQAKEDGLPVVVSMANVAASGGYWVSTPGDVIFAEPDT 402 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 + GSIGV P + L K+G++ V+++P+ +P P+ Q+MQ V+ Y Sbjct: 403 ITGSIGVFGILPSFEGTLAKMGITTDGVRTTPLSGQPDLAGGTTPEFDQIMQLGVEDIYR 462 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 FV LV++SR ++ ++ GR+W G A+++GL+D GG E+ + Sbjct: 463 RFVGLVAQSRKKKPEQIDRIAQGRVWDGGTARQLGLVDRFGGLEDAIAEAARRAKIDPAK 522 Query: 248 ----KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 +I+ W + L +Q +Q WA+ Sbjct: 523 ARAFRIEKQPDKWAEWLQEFAERESDDATAPRDMLARQAWLQRGWAL 569 Score = 71.2 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 77/204 (37%), Gaps = 13/204 (6%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAAS 109 +++ +E D A++++L G I A+ V+ K + + + Sbjct: 73 SDIVTALEAAKGDAKVKAVVLNLDGFLGGGQVALGRIGAALDAVRAAKKPVLAYATLYSD 132 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y ++ ++ + V +G Y K +DKLGV+ + K+ PF Sbjct: 133 DSYQLAAHASEVWTDPLGGVAIMGRGGSNLYYKGLIDKLGVNTHVYRVGTYKSFVEPFIR 192 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESR--------NIPYDKTLVLSDGRIWTGAEAK 219 +E +P+A Q Q + ++ + + V+++R ++G I A Sbjct: 193 TEQSPEARQANQALAEALWQQWQDDVAKARPRARIAAYAGDPAAAARAANGDI--AKAAL 250 Query: 220 KVGLIDVVGGQEEVWQSLYALGVD 243 GL+D +G + + D Sbjct: 251 SAGLVDKLGDATTFADHVADIAGD 274 >gi|317051372|ref|YP_004112488.1| signal peptide peptidase SppA, 36K type [Desulfurispirillum indicum S5] gi|316946456|gb|ADU65932.1| signal peptide peptidase SppA, 36K type [Desulfurispirillum indicum S5] Length = 277 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 56/266 (21%), Positives = 114/266 (42%), Gaps = 3/266 (1%) Query: 4 VLKKIKTRYVMLSLVTLT-VVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 + K IK ++L ++ +T V S + PH+ + + G + D + ++ +R Sbjct: 1 MKKFIKWFLILLVIIFVTSAVISSMDRQKKLKEPHIGLVTLEGILYDIDFVSGALDDFAR 60 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 + T ++V ++SPGG + ++ I+ KPV +AAS + ++ I Sbjct: 61 NPMITGVLVRVNSPGGVVTPSQELYSLIRHYP--KPVWAFHDGLAASGALFATIGADRIG 118 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 T++ GSIGV+ + + +K+G+ +VK+ P K S + +++++++ Sbjct: 119 TQSTTITGSIGVIIRSINARELYEKIGIEEITVKTGPFKNILSTNQPLGDDERRILEELI 178 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 SY FV ++ SR++ + ++DGRI++G A + GL D + E Sbjct: 179 GDSYDEFVNAIASSRDMDKQLLIDIADGRIFSGLRAVEYGLADEISSYHEFRNKFAQELQ 238 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSI 268 L + Sbjct: 239 VHPDNYFVYQRSRGERLRELLSTVQA 264 >gi|56460437|ref|YP_155718.1| periplasmic serine protease [Idiomarina loihiensis L2TR] gi|56179447|gb|AAV82169.1| Periplasmic serine protease, ClpP family [Idiomarina loihiensis L2TR] Length = 616 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 71/274 (25%), Positives = 130/274 (47%), Gaps = 13/274 (4%) Query: 27 WSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPG 77 S + +A + RGQI + I + A+++ + SPG Sbjct: 314 PESLQPTDRSQIAVVVARGQIVNGSQKAGMIGGDSTAKLIREARNNKQTKAIVLRIDSPG 373 Query: 78 GSAYAGEAIFRAI-QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GSA+A E I + I Q + PV+ + +AAS GY I+ ++ IVAA T++ GSIGV Sbjct: 374 GSAFASEIIRQEILQAKEAGIPVVASMSTVAASGGYWIAADADKIVAAPTTITGSIGVFG 433 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 ++ L +GV +V ++ ++ +P E+ +++Q V+++Y F+ +VS++ Sbjct: 434 LLMTLEDSLAAIGVHSDTVSTTEIQGL-NPLEEMTEYQKKLVQSSVEATYEDFLTIVSKA 492 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI--RKIKDWNP 254 RN+ D ++ GRIWTG +A + GL+D +G ++ + L + ++ Sbjct: 493 RNMSRDDVHEVAQGRIWTGKQAMERGLVDQLGDFDDSVAAAAELAAIDDYDVKIVQQELS 552 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 K +F ++ N S L ++ Q + G Sbjct: 553 SKEQFFANMFNSSSEYLPVPSVGGEAQHWLMGTL 586 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 93/281 (33%), Gaps = 37/281 (13%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------- 51 K I L L V FS +E + + G + + + Sbjct: 16 RKVILNLVFFLILAVFLVSLFSGEDPIEVPENGILVLNPNGMLVEEKTWVDPFSQFLNEA 75 Query: 52 -------------ELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRK 97 ++++ IE+ D+ AL ++L + S +A+ A+ + Sbjct: 76 MGSSDDIPEVLLSDVVDSIEKAKTDERIGALYLNLQNLYPSGLNKLQAVAEALDDFRTSG 135 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + Y ++ ++ + V G+ + Y K LDKL V + K Sbjct: 136 KPIISNADYYDQHQYYLAAHADQLYLNPMGGVVFEGLDYTQLYFKDLLDKLKVQPQVFKV 195 Query: 158 SPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY--------DKTLVL 207 KA PF ++++ +A + + + + + F V+ +RNI D Sbjct: 196 GKFKAAVEPFIRNDMSDEAREANEFLYSALWDSFRTDVTAARNINPLVTSGKVDDYMSAF 255 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + A + ++D + + EV L L Sbjct: 256 NSANGDMAKMALETNMVDALRTRTEVRNELINLAGYDKEED 296 >gi|310825614|ref|YP_003957972.1| Signal peptide peptidase SppA, 67K type [Stigmatella aurantiaca DW4/3-1] gi|309398686|gb|ADO76145.1| Signal peptide peptidase SppA, 67K type [Stigmatella aurantiaca DW4/3-1] Length = 598 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 70/311 (22%), Positives = 128/311 (41%), Gaps = 35/311 (11%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIE---------------DSQELIERIERISR 62 + Y + + VA + G I ++ + + + S Sbjct: 274 LLFLDKYLDRTGGAREEGETVALVYGVGGIVRGKSESNPFGGEATFGAESVALALRKASE 333 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNII 121 D A++ + SPGGS A + + R +Q+ + + KPVI + AAS GY +S ++ I Sbjct: 334 DKEVKAILFRVDSPGGSYVASDTVRREVQRAREKGKPVIVSMATYAASGGYFVSMGADKI 393 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 VA +L GSIGV F KLG++ +++ S S+ P+ Sbjct: 394 VAQPGTLTGSIGVYGGKMVTADFWAKLGINFETISLGKDATLYSTDSDFTPEQQAKNDAS 453 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 +D Y F + +E R++P +K ++ GR+WTG +AK++GL+D +GG + + + Sbjct: 454 LDRVYTDFTQKAAEGRHLPLEKLQAVARGRVWTGEDAKELGLVDELGGFPKALELVREAA 513 Query: 242 VDQSIRKIKDWNPPKNYWFCDLK---------------NLSISSLLEDTIPLMKQT---- 282 K+ P+ ++ + + L IP ++QT Sbjct: 514 KLPKDAKVHLQVFPRKKQPAEVIADILGGGEGDNSEDEGGAQVAALSPLIPALEQTRQMY 573 Query: 283 KVQGLWAVWNP 293 ++ +W P Sbjct: 574 RLGARLGLWGP 584 Score = 95.1 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 80/199 (40%), Gaps = 8/199 (4%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA--- 107 ++++E +E+ ++D +L+V + P G + + A++ + + Sbjct: 72 RDVVEALEKAAQDKRVKSLLVHIDQP-GGVAVAQELRDAVKAFRASGKKAVAFTDTFGEG 130 Query: 108 --ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 A+ Y ++ A + I + V G+ + P+ + KLGV + + K + Sbjct: 131 GSATGAYYLATAFDEIYIQPSGDVTLTGIAMETPFARDAFAKLGVQPRIGQRYEYKNAVN 190 Query: 166 PFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 ++E + + + S + VR ++E R + D+ L D G A + L Sbjct: 191 TYTEQGYTAAHREATEKFLGSLFGQLVRGIAEGRKLSEDEVKGLIDRAPLLGQAALEAKL 250 Query: 224 IDVVGGQEEVWQSLYALGV 242 +D + ++EV + Sbjct: 251 VDGLLYRDEVLAKVKEEAG 269 >gi|115375108|ref|ZP_01462376.1| signal peptide peptidase SppA, 67K type [Stigmatella aurantiaca DW4/3-1] gi|115367854|gb|EAU66821.1| signal peptide peptidase SppA, 67K type [Stigmatella aurantiaca DW4/3-1] Length = 587 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 70/311 (22%), Positives = 128/311 (41%), Gaps = 35/311 (11%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIE---------------DSQELIERIERISR 62 + Y + + VA + G I ++ + + + S Sbjct: 263 LLFLDKYLDRTGGAREEGETVALVYGVGGIVRGKSESNPFGGEATFGAESVALALRKASE 322 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNII 121 D A++ + SPGGS A + + R +Q+ + + KPVI + AAS GY +S ++ I Sbjct: 323 DKEVKAILFRVDSPGGSYVASDTVRREVQRAREKGKPVIVSMATYAASGGYFVSMGADKI 382 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 VA +L GSIGV F KLG++ +++ S S+ P+ Sbjct: 383 VAQPGTLTGSIGVYGGKMVTADFWAKLGINFETISLGKDATLYSTDSDFTPEQQAKNDAS 442 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 +D Y F + +E R++P +K ++ GR+WTG +AK++GL+D +GG + + + Sbjct: 443 LDRVYTDFTQKAAEGRHLPLEKLQAVARGRVWTGEDAKELGLVDELGGFPKALELVREAA 502 Query: 242 VDQSIRKIKDWNPPKNYWFCDLK---------------NLSISSLLEDTIPLMKQT---- 282 K+ P+ ++ + + L IP ++QT Sbjct: 503 KLPKDAKVHLQVFPRKKQPAEVIADILGGGEGDNSEDEGGAQVAALSPLIPALEQTRQMY 562 Query: 283 KVQGLWAVWNP 293 ++ +W P Sbjct: 563 RLGARLGLWGP 573 Score = 95.1 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 80/199 (40%), Gaps = 8/199 (4%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA--- 107 ++++E +E+ ++D +L+V + P G + + A++ + + Sbjct: 61 RDVVEALEKAAQDKRVKSLLVHIDQP-GGVAVAQELRDAVKAFRASGKKAVAFTDTFGEG 119 Query: 108 --ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 A+ Y ++ A + I + V G+ + P+ + KLGV + + K + Sbjct: 120 GSATGAYYLATAFDEIYIQPSGDVTLTGIAMETPFARDAFAKLGVQPRIGQRYEYKNAVN 179 Query: 166 PFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 ++E + + + S + VR ++E R + D+ L D G A + L Sbjct: 180 TYTEQGYTAAHREATEKFLGSLFGQLVRGIAEGRKLSEDEVKGLIDRAPLLGQAALEAKL 239 Query: 224 IDVVGGQEEVWQSLYALGV 242 +D + ++EV + Sbjct: 240 VDGLLYRDEVLAKVKEEAG 258 >gi|116626894|ref|YP_829050.1| signal peptide peptidase SppA, 67K type [Candidatus Solibacter usitatus Ellin6076] gi|116230056|gb|ABJ88765.1| signal peptide peptidase SppA, 67K type [Candidatus Solibacter usitatus Ellin6076] Length = 573 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 62/266 (23%), Positives = 119/266 (44%), Gaps = 15/266 (5%) Query: 33 DNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSPGG 78 VA + G I + + R+ D A+IV + SPGG Sbjct: 287 QGKSQVALVVGAGDIVRGDANDDGSGESNLTSYGFNKILRRVGSDSQIKAVIVRIDSPGG 346 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A + I+R + + +KP++ + + AAS GY ++ + IVA + GSIGV+F Sbjct: 347 EVTASDEIWREMNLLAKKKPMVISMSDTAASGGYYMAMTGDPIVAYPATFTGSIGVVFGK 406 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P ++ +KLG+S +++ S ++ + P+ ++ +D SY FV V+ +R+ Sbjct: 407 PNIRGLYEKLGISKDAIQRGKNADIDSDYTPLTPEQRAKLRAGIDESYQDFVTKVANARH 466 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN-PPKN 257 +D+ ++ GR+W G++AK GL+D GG ++ + + + ++ P + Sbjct: 467 RTFDQIDQVAQGRVWLGSQAKPRGLVDETGGLDKAIELVKQKAKIPASERVTLMVFPGRR 526 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTK 283 L S ++E + + Sbjct: 527 NILDILMKKSQEDMMEMKLAQVLGRM 552 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 49/271 (18%), Positives = 103/271 (38%), Gaps = 22/271 (8%) Query: 1 MEFVLKKIK-TRYVMLSLVTLTVVYFSWSSHVED-NSPHVARIAIRGQ-----------I 47 M+F++ V LS++ L VV + S V + + G+ I Sbjct: 1 MKFLIGLATGVALVFLSIILLFVVALRFREKPPVIASDSVLVMRLEGELPEKTPVEIPAI 60 Query: 48 EDSQE-------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI 100 + +++ + D A+++ + + I K K + Sbjct: 61 LGGDHTPATVVGVWSALDKAAADPHIRAVVLQPEGISAGWAKLQELRLDIDKFKKSGKPV 120 Query: 101 TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160 + Y I+ ++ + + V G+ + Y K LDKLGV+++ + Sbjct: 121 FAYLRQPGAREYFIASDADRVYLGPSDPVMLKGLRAEMMYFKKTLDKLGVNVEIEHAGKY 180 Query: 161 KAE--PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEA 218 K S+++P+ ++M VVD Y V ++ +R ++ + D +T ++A Sbjct: 181 KDFGDMFTRSDMSPETREVMTSVVDDLYSDLVSGIATARKKTPEEVRAIIDQGPFTASQA 240 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 K GL+D + ++++W L K+ Sbjct: 241 LKAGLVDELRFEDQMWGELKERLKSGEPSKV 271 >gi|168008373|ref|XP_001756881.1| predicted protein [Physcomitrella patens subsp. patens] gi|162691752|gb|EDQ78112.1| predicted protein [Physcomitrella patens subsp. patens] Length = 534 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 58/260 (22%), Positives = 114/260 (43%), Gaps = 16/260 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED--------------SQELIERIERISRDDSATALIV 71 S + + S +A I G I S IERI + A+I+ Sbjct: 274 SKTLGLAGGSNRIAIIRAAGNITRTASGRLGVSGEGIVSDSFIERIRFVREAKQFKAVII 333 Query: 72 SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 + S GG A A + ++R I+ + RKPVI + ++AAS GY ++ A+ +++A ++ GS Sbjct: 334 RIDSGGGDALASDLMWREIKLLAERKPVIASMADVAASGGYYMAMAAGVVLAEPLTITGS 393 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IGV+ + +++G + + + + +P+ ++ ++Y F Sbjct: 394 IGVVTAKFNLATLYERVGFAKEIISRGKFAELDADQRPFSPEEENFFKESAMNAYTSFRN 453 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI-- 249 +ESR++P +K ++ GR+WTG A GL+D +GG + +++ Sbjct: 454 KAAESRSMPIEKLEEVAQGRVWTGKAALDRGLVDTLGGISKAVAIAKQKAGIAEDQQVSL 513 Query: 250 KDWNPPKNYWFCDLKNLSIS 269 + + + L + + Sbjct: 514 VELSRRQASPLSLLLGGASA 533 Score = 79.7 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 34/246 (13%), Positives = 91/246 (36%), Gaps = 13/246 (5%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVS 72 V I + G+I + ++ E + + + D +++S Sbjct: 23 MLFTLPWQRVKKGSVLTIKLSGEIAEQYQGRFMQGLSLPQICENLIKGAHDPRIEGVVLS 82 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 + + I R ++ K + + Y ++ A + + A + + + Sbjct: 83 IEPLACGWGKLDEIRRHMEYYKQSGKFLVGYMPVGGEKEYYLASACSELYAPPGAYISLL 142 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 G+ Q ++ L+K+GV + + K+ + +++ +M+ ++D Y F+ Sbjct: 143 GLKVQGQFLGGVLEKVGVQPQVQRIGKYKSAGDQLSRKDMSEANREMLTALLDDIYANFL 202 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 VS ++ ++ L + I+ ++ KK I + +E+ + L + + ++ Sbjct: 203 EEVSRAKGKTKEEVEALFESGIYKVSDLKKDRWITDIKYADEIEEMLKERIKAKMDKPLQ 262 Query: 251 DWNPPK 256 K Sbjct: 263 TVQHRK 268 >gi|78779664|ref|YP_397776.1| signal peptide peptidase A [Prochlorococcus marinus str. MIT 9312] gi|78713163|gb|ABB50340.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Prochlorococcus marinus str. MIT 9312] Length = 269 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 124/239 (51%), Gaps = 4/239 (1%) Query: 33 DNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + +ARI I I S +++ +++I D ALIV + SPGG+ + I+ AI Sbjct: 8 KSKKRMARILIDEPITSSTRVSVLKALKQI-EDREFPALIVRIDSPGGTVGDSQEIYSAI 66 Query: 91 QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++K++ VI ++AS G I AS+ IVA ++ GSIGV+ + + LDK+G Sbjct: 67 KRLKDKGCKVIASFGNISASGGVYIGVASDKIVANPGTITGSIGVIIRGNNLSELLDKVG 126 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + ++VKS K SP ++ + +++Q ++D SY F V+E RN+P ++ SD Sbjct: 127 IKFETVKSGVFKDILSPDKPLSEEGRRLLQGLIDESYKQFTEAVAEGRNLPVEEVRKFSD 186 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 GRI+TG +AK++GL+D +G + + + + + K + + Sbjct: 187 GRIFTGTQAKELGLVDEIGDEFVAREVAAKMVNIDPKLQPLTFGKKKKKILGLIPGSKV 245 >gi|254513823|ref|ZP_05125884.1| signal peptide peptidase SppA, 67K type [gamma proteobacterium NOR5-3] gi|219676066|gb|EED32431.1| signal peptide peptidase SppA, 67K type [gamma proteobacterium NOR5-3] Length = 587 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 63/251 (25%), Positives = 115/251 (45%), Gaps = 9/251 (3%) Query: 45 GQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT-EV 103 G I L + ++ A+++ +++ GGS +A E I I +++ + + Sbjct: 317 GTI-GGDTLSRLLRNTAQRADTKAIVLRVNTGGGSVFASEIIRAEIARIRQAGTPVVVSM 375 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 +AAS GY I+ A++ I+A T++ GSIGV +P V+ L K G+ V ++ + Sbjct: 376 GSVAASGGYYIATAADRIIATPTTITGSIGVFAAFPTVERLLAKGGIHTDGVGTTGLAGG 435 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 P ++P ++Q VD Y F++LVS+ R+I + ++ GR+ + +A + GL Sbjct: 436 LRPDRALDPAVSDVLQQSVDDLYAQFLQLVSQGRSIDMETLDSIAQGRVLSARDALEAGL 495 Query: 224 IDVVGGQEEVWQSLYALGV-DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282 +D +G + Q L Q + P + L+ LS + + Sbjct: 496 VDGLGSLDYAVQEAATLAGFSQDDYNVISIMPEFSSRDLLLQQLSERMGVSRLLA----- 550 Query: 283 KVQGLWAVWNP 293 V GL +W P Sbjct: 551 -VPGLALLWGP 560 Score = 80.4 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 40/310 (12%), Positives = 100/310 (32%), Gaps = 39/310 (12%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------------- 51 V+ + + + + + G++ D + Sbjct: 6 VVFLAILVVLWVTFSGKPEPLPERAALVLDLAGRVVDERSQIEAASLIFAQEPSSREILL 65 Query: 52 -ELIERIERISRDDSATALIVSLSSPGGSAYAGE----AIFRAIQKVKNRKPVITEVHEM 106 +LI+ ++ S D+ +AL++ L G G+ + AI + + + + + Sbjct: 66 MDLIDSVDIASSDERISALVLQLD---GLVSIGQSKTTELGEAIARFRETGKPVVAIGDY 122 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + Y ++ ++ ++ V G Y L+KL V++ ++ K+ P Sbjct: 123 YSQDQYRLAVEADAVLMHPFGAVALEGYSVYSNYFADALEKLSVTMHVFRAGEYKSIAEP 182 Query: 167 --FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--------GA 216 ++++ + ++ + + + V E R + L + G Sbjct: 183 LQRNDMSDGERAITKEWLQDLWSAYAAAVEERRGLETGALDALLNNFPQRLRDEGGNAGR 242 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 A + GL+D + + + + L +L + P Y L +I Sbjct: 243 LALQAGLVDELLDRAQQNEYLTSLVGARDEDGSFAGLPFARYLSRMRPTALSPDLPTVSI 302 Query: 277 PLMKQTKVQG 286 + + G Sbjct: 303 VTAQGNMLPG 312 >gi|119945670|ref|YP_943350.1| signal peptide peptidase SppA, 67K type [Psychromonas ingrahamii 37] gi|119864274|gb|ABM03751.1| signal peptide peptidase SppA, 67K type [Psychromonas ingrahamii 37] Length = 617 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 122/250 (48%), Gaps = 12/250 (4%) Query: 31 VEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 V +A + G+I + +E D+ A+++ + SPGGSA+ Sbjct: 322 VSGAKDQIAVVHASGEILSGTQPSNVIGGDSFSQLLETALNDNQIKAVVIRIDSPGGSAF 381 Query: 82 AGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 A E I + I +K K V+ + +AAS GY I+ A++ I+A T+L GSIG+ Y Sbjct: 382 ASEKIRQHILALKKADKKVVVSMASVAASGGYWIASAADYIIATPTTLTGSIGIFGMYAS 441 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L+ G+ + ++ + + SP +NP+ +++Q +++ Y F+ +V++ RN+ Sbjct: 442 ADKALNNFGIFNDGIGTTEL-SSFSPTRALNPELAEIIQLGIENGYQQFLEVVAQGRNMT 500 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 + ++ GR+WTG +AK +GLID +G ++ + L Q +K P + Sbjct: 501 VAEVDKIAQGRVWTGVDAKSLGLIDELGNLQDAINTASRLASLQD-YGVKIIQPVLSTKQ 559 Query: 261 CDLKNLSISS 270 + L + + Sbjct: 560 HLINELLLGA 569 Score = 76.6 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 90/280 (32%), Gaps = 42/280 (15%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------- 50 + + I L + V + + G I + Sbjct: 15 INIMRLFIINVLFFAILAAIIFVINLDRPALLVAENSTLHLNFTGNIVEQAAPADFAGEI 74 Query: 51 -----------------QELIERIERISRDDSATALIVSLSSPGGSA-YAGEAIFRAIQK 92 +++ I R +D +A+++ L G+A I +A+ Sbjct: 75 SKKMISSNENQNNEYQIDKILNTIHRAQQDPKISAILLELDGLDGAAINHIADIGKALND 134 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 K+ +T V + + YL++ ++ I +V G Y K LDKL ++ Sbjct: 135 FKSTGKSVTAVADNYSQTQYLLASYADKIYLNPQGMVLLPGYSVYRLYFKEALDKLLITP 194 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRN-----------I 199 K K+ PF ++++ + ++ +D + ++ + R Sbjct: 195 HIFKVGTYKSFVEPFTTNKMSEASKLANKNWLDQLWKNYIDTILFQRKDNSKISVQSISP 254 Query: 200 PYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 + L + A +VGL+D + + +V L Sbjct: 255 TLKQLKSSLIKASGNSAVYALQVGLVDDLKNRNDVIDKLK 294 >gi|332993393|gb|AEF03448.1| signal peptide peptidase SppA, 67K type [Alteromonas sp. SN2] Length = 621 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 11/226 (4%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSAT 67 T V + + VA + +G I + + D++ Sbjct: 311 FNTYLKVVNPPLPSINSDIDKVAIVVAKGTILNGNQKAGTIGGDSTARLLRKARLDENVK 370 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAET 126 A+++ + SPGGS E I + + ++KN KPV+ + AAS GY I+ ++ I A+ + Sbjct: 371 AVVLQIDSPGGSTLGSEIIRQEVLELKNAGKPVVVSMSTYAASGGYWIAANADRIFASPS 430 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 ++ GSIGV + + LD LG+ V S+ + S + P+ Q++Q V++SY Sbjct: 431 TITGSIGVFGMFMTYENSLDYLGIHSDGVGSNELAG-FSAVRPLAPEFGQILQRNVETSY 489 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 F+ LVS +R++ D+ ++ GR+W G +A ++GL+D +G E+ Sbjct: 490 GNFLSLVSNARDMTVDEVDDVAQGRVWIGTDALELGLVDELGTLED 535 Score = 95.4 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 92/284 (32%), Gaps = 38/284 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHV-EDNSPHVARIAIRG--QIEDS------- 50 + F K ++ V + + S + + + G IE Sbjct: 19 LNFTRKLFFNVIFLVIFVGIIIAITSQEDDQLTVKANSALLLTLNGQLVIEKESVDPFEQ 78 Query: 51 -----------------QELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQK 92 +++++ IE +D AL++ L G + RAI Sbjct: 79 FLQDAMGSEPDNPEVLVRDVVKVIENAKQDRRIKALVLDLQGLSGGGLDKLRTVARAIND 138 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 K + + + + Y ++ +N + + G Y K FL+KL V+ Sbjct: 139 FKTSEKPVYAIGDYYTKEQYYLASHANHVYLNPMGSLLLDGYGRYGMYFKDFLEKLKVTT 198 Query: 153 KSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 + K+ P ++++ A + + +D + + V+ +R IP +G Sbjct: 199 HIFRVGTYKSAVEPLIRNDMSEAAKEAERKWLDGYWQQYKEDVAAARGIPLSNFDETLEG 258 Query: 211 RI--------WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + A + +D + +EEV L L + Sbjct: 259 LLAKFEQAGGDFANYALQNNWVDALKTREEVRVELTGLVGENED 302 >gi|269121370|ref|YP_003309547.1| signal peptide peptidase SppA, 36K type [Sebaldella termitidis ATCC 33386] gi|268615248|gb|ACZ09616.1| signal peptide peptidase SppA, 36K type [Sebaldella termitidis ATCC 33386] Length = 584 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 62/291 (21%), Positives = 132/291 (45%), Gaps = 21/291 (7%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-----------ELIERIERISRDDSAT 67 + + ++ V + +A I G I + + E+I+++ + ++ Sbjct: 287 IIDIYDYAAKMRVPEKKDKIAVIYAEGPIMYDENTGNNIAITPVSIAEKIKQLKKVNNLK 346 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ ++SPGGSA + E I++ ++ PV + AAS GY I+ A + I A +++ Sbjct: 347 GVVLRINSPGGSALSAELIYQMFSEMP--VPVYVSMGSTAASGGYYIAMAGDKIFADKST 404 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 + GS+GV+ P +K LG+ S+ PF +++ ++ + ++ + +Y Sbjct: 405 ITGSVGVVSTIPKIKKAAGNLGIDSSSITKGKYSDLYDPFVDLSEESTERLRTSMQDTYK 464 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV----- 242 F V ++R I DK + G++W G EAK++GL+D +G ++ Q++ Sbjct: 465 EFKSRVEKNRGISADKLEEYAQGKVWLGDEAKEIGLVDQIGSLDDTIQAMAKDLKLQNYS 524 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLE---DTIPLMKQTKVQGLWAV 290 + I +D+N + + + I +KQ + L+ + Sbjct: 525 VEEIFVKEDYNKVLQRLSGYITAQVTLMDIPKVMNEIEFLKQNSAKPLYYL 575 Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 108/285 (37%), Gaps = 37/285 (12%) Query: 3 FVLKKIKTRYV--MLSLVTLTVVYFSWSS--------HVEDNSPHVARI---------AI 43 F +K+I + ++ +L++V T+V+ +++ N + + + Sbjct: 13 FTIKEIYSFFLKLLLAIVVFTIVFLIFAASMGKILEQKNTVNKNYEYVVFNPYDPTEDKL 72 Query: 44 RGQI-------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 ++ + +++ ++ I++D +I++L ++ E + +K+K Sbjct: 73 NNKLFVNSKYNVNFYKIVNSVDYIAQDPKVKGVIINLDQISLNSSQIEELIPKFEKIKKS 132 Query: 97 KPVITEVHEMAASAGYLISCASNI--IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 I + Y ++ ++ +V + ++ + G + Y K DKLG+ IK Sbjct: 133 GKKIYAYGSYIDNNKYSLAVNASEISMVPSASADLSITGYHYSSLYYKNLFDKLGIDIKV 192 Query: 155 VKSSPMKAE--PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDG- 210 + K+ + ++ + + + D F +S++R I +K + +G Sbjct: 193 IHIGDFKSYGENYTRTSISDELKGELTRIFDRRLDIFTENISKARKIDKNKLSADVMNGD 252 Query: 211 -RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 T A+ G ID + + L+ I ++ Sbjct: 253 SSFLTPFNARDRGFIDKLEYSGQ----LFQRLGITDENIIDIYDY 293 >gi|189346140|ref|YP_001942669.1| signal peptide peptidase SppA, 36K type [Chlorobium limicola DSM 245] gi|189340287|gb|ACD89690.1| signal peptide peptidase SppA, 36K type [Chlorobium limicola DSM 245] Length = 597 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 59/274 (21%), Positives = 111/274 (40%), Gaps = 21/274 (7%) Query: 31 VEDNSPHVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSP 76 S VA I + G I D L ++ D AL++ + SP Sbjct: 291 KASGSEAVAVITLSGPIVRSVGSSAMSVDEGTDVGMLRRSLDAALSDKEVKALVLRIDSP 350 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GG A A + + + +KP++ + +AAS GY+ + A + A ++ GSIGV Sbjct: 351 GGDALASSDMLQMLDSAAVKKPLVVSMSGIAASGGYMAALAGREVYAMPLTVTGSIGVYA 410 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 P + K+G+ V + F + +A + Y F+ V+ S Sbjct: 411 LKPDISELARKVGLGRDVVTRGRFADANTVFKPLEGEAYEKFIGASGDIYLDFIGKVAAS 470 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNP 254 R + + ++ GR+WTG +AK+ GL+D GG ++ L +I + Sbjct: 471 RKMSVAEVDSVAGGRVWTGRQAKQKGLVDHAGGLFAAVRAAQRLAGMDGSKQPQILLYPE 530 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 K+++ L+ +D + +++ ++ + Sbjct: 531 QKSWFQMLLEGNP-----QDIVGSLERMAMRRVL 559 Score = 77.0 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 42/291 (14%), Positives = 112/291 (38%), Gaps = 22/291 (7%) Query: 10 TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAI------------------RGQIEDSQ 51 +V++ ++ + + + S + V + + +G+ Q Sbjct: 12 FVFVLVPVIIAVLFFAFFRSSHDLPDRFVLTVPLGGSLEERSAESSPVPYLMQGESLSFQ 71 Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 +L+ + + D +++ + S + AI+KV+ + A + Sbjct: 72 DLLFLFNQAAGDKRIDTVLLEIGGLRTSPAKITELREAIEKVRAGGRKVVAYLHSAEDSD 131 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV- 170 YL++ A + IV + G+ + Y L ++GV+ ++ + K+ P++ Sbjct: 132 YLLASACDSIVVERGGYLLLDGLKAESLYYTTPLGRIGVTFQAAQWKKYKSGVEPYTRTA 191 Query: 171 -NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLIDVVG 228 +P+ ++ + ++D Y ++ VS+ R I D + + + + A+A K+GL D V Sbjct: 192 ASPEYIEQINALLDDVYADYIGYVSKRRGISRDSLESVINNVALVSAAKAVKLGLADGVA 251 Query: 229 GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 E + + + D + + + + + + + + ++ Sbjct: 252 TIWE-LKRATGRRISGKEPEENDRLFVQADRYRETLDWPVKASGSEAVAVI 301 >gi|325523003|gb|EGD01426.1| protease IV [Burkholderia sp. TJI49] Length = 261 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 59/218 (27%), Positives = 104/218 (47%), Gaps = 11/218 (5%) Query: 7 KIKTRYV---MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIE 58 KI R+ +L L+ ++ FS + + H A + I G+I ++ ++ ++ Sbjct: 44 KIFFRFAFLAVLVLLAFALIDFSSDAKFSSSGRHTALVTIDGEIAAGTNANADDINTALD 103 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLIS 115 DD +++ ++SPGGS ++ I++++ + KP+ V +M AS GY I+ Sbjct: 104 AAFDDDGTAGVVLRINSPGGSPVQAGMVYDEIRRLRAKYPDKPLYVVVTDMCASGGYYIA 163 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A++ I + S+VGSIGVL +DKLGV + S K PFS PK Sbjct: 164 SAADKIFVDKASIVGSIGVLMDGFGFTGLMDKLGVQRRLHTSGENKGFYDPFSPETPKMD 223 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 Q+++D + F++ V + R +T + G W Sbjct: 224 AHAQELLDQVHAQFIKAVKDGRGKRLHETPDMFSGLFW 261 >gi|145220224|ref|YP_001130933.1| signal peptide peptidase SppA, 36K type [Prosthecochloris vibrioformis DSM 265] gi|145206388|gb|ABP37431.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Chlorobium phaeovibrioides DSM 265] Length = 604 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 63/282 (22%), Positives = 113/282 (40%), Gaps = 17/282 (6%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIE--------------DSQELIERIERISRDDSATAL 69 S + +A + I G I ++ ++R D + A+ Sbjct: 291 ASFDSPLEHEGREKLALVTISGPIVPTGSEGVEDMGEGVGEGQIRRALDRALADKNIRAI 350 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 +V + SPGG A A ++ + +KP++ + +AAS GY+ + A I A+ ++ Sbjct: 351 VVRIDSPGGDAMASASMLEMLDSAAVKKPLVVSMSGVAASGGYMAALAGKTIYASPLTIT 410 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV P + +K G+ V S F ++ + +M + Y F Sbjct: 411 GSIGVYALKPEISGLAEKTGLGRSVVTRGRYADANSLFKPLDREEYRMFVEASGEIYRDF 470 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI--R 247 V V+ SR + + L+ GR+WTG A VGL+D GG + + L S Sbjct: 471 VAKVAASRTLSFAGADSLAGGRVWTGKRALAVGLVDRSGGLFDALREAQRLAGIDSTRHP 530 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 +I + + W L N + L++ ++ + + Sbjct: 531 EIVSLSEEQG-WIALLLNGDGARLMQRAERIVVKHLAGSALS 571 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 97/237 (40%), Gaps = 21/237 (8%) Query: 11 RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI------------------EDSQE 52 ++ SL+ L V+F S V I + G + QE Sbjct: 20 AVIVFSLLALAAVFFLQRSRSALPERFVLHIPLTGTVREHSSRSGALPFLVPMEPLSQQE 79 Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 L+ + R S D A+++S+ + + +I+ V+ + + Sbjct: 80 LLFMLRRASGDSRVEAVLLSIDGLRAAPAKIGELRASIEAVRKGGKRVIAFLRSPEDSDC 139 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEV 170 L++ A + I+ A+ S + G+ + Y K L K+GVS ++ + K+ P+ S Sbjct: 140 LLASACDSIIVAKGSFMLLDGLRAETLYYKTALAKIGVSFQAAQWKEYKSGVEPYVRSSP 199 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDV 226 +P++ + + +++D Y ++ VS R + + + + R T EA ++ L+D Sbjct: 200 SPQSRERLGELLDDVYGEYLGYVSRRRAMAPETLERIVNTRPLMTAEEAIRLKLVDG 256 >gi|254172566|ref|ZP_04879241.1| protease IV [Thermococcus sp. AM4] gi|214033495|gb|EEB74322.1| protease IV [Thermococcus sp. AM4] Length = 329 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 116/252 (46%), Gaps = 3/252 (1%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL--IERIERISRDDSATALIVSLSSP 76 +L + + +A + I G I+ L + +E++ +DDS +++ + SP Sbjct: 68 SLIRAIEMERKGINATNSTIAVVPIFGVIDGQTALNTVTTLEKLMKDDSVGGVLLWIESP 127 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GG A I+ ++ +K +KPV+ +AAS GY I+ ++ I+A + VGSIGV++ Sbjct: 128 GGDVGAVREIYHEVEVLKAKKPVVAYTGGIAASGGYYIAVGTDRIIADPLAEVGSIGVIY 187 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + + G+ + K+ P K + + + + + ++D+ + F++ VS Sbjct: 188 VHFNLADNYASNGIKVDVFKTGPHKDMGAEWRALTEYERKKIWGMIDAYFQSFLQAVSMG 247 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R++ ++T + G W E L+D G + Q L L +S +P + Sbjct: 248 RDMTLNETRKYATGETWLAVE-VNGTLVDETGNFQTAVQELEKLMGVESAEVKVYGSPTQ 306 Query: 257 NYWFCDLKNLSI 268 +Y L + ++ Sbjct: 307 SYSLGVLGDEAL 318 >gi|260890123|ref|ZP_05901386.1| hypothetical protein GCWU000323_01285 [Leptotrichia hofstadii F0254] gi|260860146|gb|EEX74646.1| signal peptide peptidase SppA, 36K type [Leptotrichia hofstadii F0254] Length = 262 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 118/257 (45%), Gaps = 11/257 (4%) Query: 42 AIRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 + G I + + E++E + + L++ ++SPGGSA E I++ ++K+ Sbjct: 2 NLEGVIDVKNPNKNITYENVCEKLEELKEIKNLKGLVLRINSPGGSALVSEKIYKKLKKL 61 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 P+ + ++ AS GY I+ + A +L GSIGV+ YP V + KL ++++ Sbjct: 62 T--VPIYVSMGDVCASGGYYIATTGKKLFANNFTLTGSIGVVMMYPEVTGTMKKLDINLE 119 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 +PF ++ + + + ++ Y F V +R + ++ ++ GR+W Sbjct: 120 GFGKGAGFDMLNPFEKLGEDSKEKLIHNMNEVYGEFKEHVMVARGMNDEELEKIAQGRVW 179 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR-KIKDWNPPKNYWFCDLKNLSISSLL 272 G+EAK + L+D +G E+ +S+ + +I + D+K +S + Sbjct: 180 LGSEAKNINLVDEIGTLEDCIKSMANDLKLDKYKVQIVELTQTLKETLSDIKMPFVSEEI 239 Query: 273 EDTIPLMKQTKVQGLWA 289 + + ++ Q L+ Sbjct: 240 REKVEFLQGNINQVLYY 256 >gi|149925005|ref|ZP_01913327.1| peptidase S49, protease IV:Peptidase S49, SppA [Plesiocystis pacifica SIR-1] gi|149814120|gb|EDM73741.1| peptidase S49, protease IV:Peptidase S49, SppA [Plesiocystis pacifica SIR-1] Length = 887 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 61/275 (22%), Positives = 116/275 (42%), Gaps = 28/275 (10%) Query: 26 SWSSHVEDNSPHVARIAIRGQI---------------EDSQELIERIERISRDDSATALI 70 + SP+ A + + G I + + I + D + ++ Sbjct: 562 TPERETWSESPYYAVVLLEGTIIGGKSRTIPILDIKFTGGDTVADTIRALRGDSACKGIV 621 Query: 71 VSLSSPGGSAYAGEAIFRAI--------QKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 + + S GGSA+A E ++R + + K P++ + ++AAS GY + ++ I Sbjct: 622 LRVDSGGGSAFASEVMWREVALTREAWEKDKKGSPPIVVSMSDVAASGGYYVPVGADTIF 681 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE-PSPFSEVNPKAVQMMQDV 181 A ++ GSIGV++ + V LD LGV++ ++ + + + +P+ ++ Q Sbjct: 682 AEPLTITGSIGVVYMHYDVSGLLDMLGVNVDRIERGSPAIDANAIWQPWSPEQLERQQKG 741 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 ++ +Y F+ VS R + + + G +W+G AK +GLID GG E + Sbjct: 742 IEQTYDLFLSRVSGGRGMTKEAINEVGRGHVWSGKRAKDIGLIDEFGGLREALDEVRERS 801 Query: 242 VDQSIRKIKDWN---PPKNYWFCDLKNLSISSLLE 273 + K KD+ P L SL+ Sbjct: 802 GEP-TYKAKDYPLRLLPSRPSLVQLLVKGAGSLVA 835 Score = 72.7 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 94/232 (40%), Gaps = 11/232 (4%) Query: 41 IAIRGQIEDSQELIERIERISRDDSA---TALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I ++ I + + LI + R+ R ++A + L++ G AG+ + A+++V++ Sbjct: 341 IELK-SIGNQRTLIATLRRLERAEAAGERSILLIKADGFGMGWAAGQELRDALRRVRDAG 399 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + E + Y I+ + + ++G+ + + K L K+GV ++SV Sbjct: 400 GHVYAYAEQPNTRDYWIASVAEKVYVHPAGRFATVGLGARRLFYKDALAKIGVQVQSVHI 459 Query: 158 SPMKAEPSPFSEVN--PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215 K+ F+ + + ++D ++ + ++++R + Sbjct: 460 DEYKSAHESFTRSSRSDYDREQRTALLDDTWDTVLYDIAQARGMSISAVADTIFESPLGP 519 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYAL-----GVDQSIRKIKDWNPPKNYWFCD 262 EA G D + ++EV ++L GV S+R+ P + W Sbjct: 520 QEAVDAGFADAITHRDEVLETLGEQLDESGGVVVSLRRFAPTTPERETWSES 571 >gi|294012283|ref|YP_003545743.1| protease IV [Sphingobium japonicum UT26S] gi|292675613|dbj|BAI97131.1| protease IV [Sphingobium japonicum UT26S] Length = 632 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 111/231 (48%), Gaps = 10/231 (4%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPG 77 +H N + + I G I D + + + + + AL+V + SPG Sbjct: 302 MKAHKPANGGEIGVLTIAGDIVDGEAGPGTAAGDTIAALLRKALAEKDLKALVVRVDSPG 361 Query: 78 GSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GS A E I AI + K+ P++ + +AAS GY +S +++I A ++ GSIGV Sbjct: 362 GSVMASEKIRSAIMEAKSEGLPIVASMGNVAASGGYWVSTPADVIFAEPDTITGSIGVFG 421 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 P + L K+GV+ VK++P+ +P P+ ++MQ V+ Y FV LV++S Sbjct: 422 ILPSFEGTLAKIGVTTDGVKTTPLSGQPDIAGGTTPEFDRIMQMGVEDIYGRFVGLVAQS 481 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 R + ++ GR+W G A+++GL+D GG EE L + Sbjct: 482 RRKTPQQIDAIAQGRVWDGGTARQIGLVDRFGGLEEAVAEAAKLAKIDPAK 532 Score = 73.1 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 80/215 (37%), Gaps = 13/215 (6%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMA 107 +++ ++ D A++++L G + +A+ V+ K + + Sbjct: 81 GLADIVAALDAARDDRKVKAVVLNLDGFMGGGQVALARVGKALDAVRAAKKPVFAYATIY 140 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 + Y ++ ++ V G Y K +DKLGV+ + K+ PF Sbjct: 141 SDDSYQLAAHASESWVNPLGGVAITGRGGSGLYYKGLIDKLGVNTHVYRVGTYKSFVEPF 200 Query: 168 --SEVNPKAVQMMQDVVDSSYHWFVRLVSESRN--------IPYDKTLVLSDGRIWTGAE 217 +E +P+A Q Q + D+ + + + V+++R + G + Sbjct: 201 TRTEQSPEARQANQALADALWEDWRQEVAKARPRARLAAYVRDPAGLAEAAGGNL--AKA 258 Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 A GL+D +G + + + D K D+ Sbjct: 259 AVSAGLVDRMGDEAAFGARVAEVAGDAPDDKAGDF 293 >gi|162448648|ref|YP_001611015.1| protease IV [Sorangium cellulosum 'So ce 56'] gi|161159230|emb|CAN90535.1| protease IV [Sorangium cellulosum 'So ce 56'] Length = 602 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 112/222 (50%), Gaps = 11/222 (4%) Query: 34 NSPHVARIAIRGQIED-----------SQELIERIERISRDDSATALIVSLSSPGGSAYA 82 P + I + G I + L+ + ++ +I+ + SPGGSA A Sbjct: 318 PRPILGVIEVHGAIVSRARFRGASLASEERLVASLRAARQNPRVQGVILHVDSPGGSALA 377 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + I + ++ KPV+ + +AAS GY ++ A++ IVA ++ GSIGV+ + Sbjct: 378 SDRIHHEVTRLAEVKPVVACLSNVAASGGYYVAAAAHAIVAQPQTITGSIGVVSARFALG 437 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 P L++LGVS VK SP +++ +++ +D+ Y F+R+V+ R P + Sbjct: 438 PLLERLGVSTDVVKRGARADLFSPSRKLDEGERAVVERELDAIYAAFLRVVARGRRRPVE 497 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 + L+ GR+++GA+A+ GL+D++GG E L + + Sbjct: 498 EIEPLAQGRVYSGADAQARGLVDMLGGFERALHELRQMIGPK 539 Score = 68.5 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 74/194 (38%), Gaps = 3/194 (1%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + + E + + RD L++ + S ++ A+ +++ I M A Sbjct: 63 SVERVRELGKHLMRDPRPAGLLLRMRSVHAGPAVAASLRDALLEIRAGGKDIVAYLPMGA 122 Query: 109 SAGYLI-SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP- 166 L+ + A+ IV ++V +G + YV+ L+++GV + K Sbjct: 123 DTTTLLLASAARAIVVGPETMVSPLGFAVEGRYVRRALEQVGVEPEVFAKGMYKNAGEML 182 Query: 167 -FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 ++ + + ++D +++ R + + D + +A G++D Sbjct: 183 VRDTMSAAQREQVGALLDGRLGDLTAALAQGRRVDRETAARWIDEAPFGAEQAVARGIVD 242 Query: 226 VVGGQEEVWQSLYA 239 V ++E+ L A Sbjct: 243 AVAYEDELEHMLAA 256 >gi|94677025|ref|YP_588883.1| protease 4 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220175|gb|ABF14334.1| signal peptide peptidase SppA, 67K type [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 618 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 117/234 (50%), Gaps = 11/234 (4%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLS 74 + +S +A I + G I + QE + +I D + ALI+ ++ Sbjct: 322 IYPIQQKNTLHSAQIAVIFVDGTITNEQERPGLVNCDKIAFQIRNACLDPNVKALILRVN 381 Query: 75 SPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 SPGGS A E I ++ +N KP++ + MAAS GY IS NII+A+ +++ GSIG Sbjct: 382 SPGGSVNASEIIRAELETTRNANKPIVISMGGMAASGGYWISTPGNIIIASPSTITGSIG 441 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + ++ LD +G+ V +SP+ S ++ + MMQ V++ Y+ FV LV Sbjct: 442 IFGIVHTIENLLDYVGIHADGVATSPIAGT-SITKKLPAELSTMMQLNVENGYNNFVSLV 500 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 ++SRN + ++ G IW G++A K GL+D +G ++ L + + Sbjct: 501 AQSRNKTISEIEKIAQGHIWIGSDALKKGLVDKLGDFDDAVSQAAKLANLKQYK 554 Score = 86.2 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 97/287 (33%), Gaps = 39/287 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARI-AIRGQIEDSQ-------- 51 + F + I +++L +V + + ++ A + ++G I D Sbjct: 23 LIFFRELIANLFILLLIVVIVNICLHITNTTPSFMKKGALVMDLKGFIVDQSIEKKKLRL 82 Query: 52 -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91 +++ + + ++ T L++ L + G+ + I +A+ Sbjct: 83 FNRNLHNGSNYTIPENSLFDIVNILRQAKNNNHITGLVLLLKNFYGADQPSLQYIGKALH 142 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + +N I V + + A Y ++ +N I V G Y K LDKL ++ Sbjct: 143 EFRNSGKPIYAVGDNYSQAQYFLASYANKIYLLPQGEVDLHGFATNNLYYKSLLDKLRIN 202 Query: 152 IKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------ 203 + K+ PF ++ A + ++ +V+ +RN+ + Sbjct: 203 SHVFRVGTYKSAAEPFLRDNMSKAARDADSRWTKQLWQNYLNIVATNRNLTPQQLFPNLS 262 Query: 204 --TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 S + T A K +D V + ++ + K Sbjct: 263 TILKKFSAVKGDTAQYALKNKWVDEVLSRSQIDNIMIKAFGFNDQNK 309 >gi|281419691|ref|ZP_06250690.1| signal peptide peptidase SppA [Prevotella copri DSM 18205] gi|281406220|gb|EFB36900.1| signal peptide peptidase SppA [Prevotella copri DSM 18205] Length = 594 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 69/282 (24%), Positives = 127/282 (45%), Gaps = 22/282 (7%) Query: 29 SHVEDNSPHVARIAIRGQIE--------DSQE------LIERIERISRDDSATALIVSLS 74 +A +G I DS++ +I+ ++ ++ + A+++ ++ Sbjct: 295 DDSNLMGEEIAVYYCQGSIVRMETPSIYDSEQQIVSTKVIKDLQELADNSQVKAVVLRIN 354 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 S GG AYA E I+RA++++ +KPV+ + MAAS Y +S + I+A T+L GSIG+ Sbjct: 355 SGGGDAYASEQIWRAVKELNKKKPVVVSMGGMAASGAYYMSMGAQYIMAQPTTLTGSIGI 414 Query: 135 LFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFVR 191 P + KLG VK++ S + + + MQ+ V+ Y F Sbjct: 415 FGALPDFSDLMTKKLGFKYDEVKTNRNSTYASAGMSRPWSAEEIATMQNYVNRGYSLFRN 474 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 V+E R + ++ ++ GR+W G +AKK+ LID GG + L S + ++ Sbjct: 475 RVAEGRKMSTEQVEKIAQGRVWLGTDAKKIKLIDGFGGLSDAIDKAAELAHLSSYQAVEY 534 Query: 252 WNPPKNYWFCDLKNLSISS---LLEDTIPLMKQTKVQGLWAV 290 P W L +++ + L++ + L Q + Sbjct: 535 --PALAGWMEQLLDMAGGNKGTYLDEQLRLALGDLYQPFIMI 574 Score = 92.0 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 93/282 (32%), Gaps = 33/282 (11%) Query: 1 MEFVLKKIKTRYV----------MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS 50 M+ K + V +L + + + S +S V + ++GQIED Sbjct: 1 MKDFFKNVAATIVGLFAFGLIMTILGFICIIGMVASSNSKPALKDNSVMVMKLQGQIEDR 60 Query: 51 QE-------------------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 E ++ I + +D + + + I A+ Sbjct: 61 TEDNWLGELTGEQFNNIGMNRILSSIRKAKNEDKVKGIYLETGILETDYATLQEIRNALA 120 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 K I + + GY ++ +N + V G+ Q Y+K K GV Sbjct: 121 DFKKSGKWIIAYGDALSQGGYYLASVANKVYVNPEGNVDWHGIASQPQYIKDVAAKFGVH 180 Query: 152 IKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 VK K+ ++E ++ + + + + + VS+SRNI D +D Sbjct: 181 FTVVKVGKYKSYTETYTEDKMSDANREQVSRYISGLWLQMLGDVSKSRNISKDSLNRYAD 240 Query: 210 GRIWTGAEA--KKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 G + K ++D +E+ + ++ I Sbjct: 241 GLMVFDDTKLLKSRKMVDGFCYYDEIRDVVKKQLGLKADDTI 282 >gi|159464533|ref|XP_001690496.1| signal peptide peptidase [Chlamydomonas reinhardtii] gi|158279996|gb|EDP05755.1| signal peptide peptidase [Chlamydomonas reinhardtii] Length = 745 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 106/258 (41%), Gaps = 11/258 (4%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSP 76 + + + G I +I ++ +++D S A+++ + SP Sbjct: 360 FPTLGTAGGKKRIVVLRTSGAIVGKASSGSVITPDGVIPKLRALAKDKSVAAVVLRVDSP 419 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GG A A + ++R I+++ KPVI + ++AAS GY + A+ IVA ++ GSIGV+ Sbjct: 420 GGDALAADLMWREIRQLDAVKPVIASMADVAASGGYYMGMAARAIVAEPLTITGSIGVVT 479 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + K+G + + + + + + ++ +Y F + S Sbjct: 480 GKFNLSELYAKIGYNKELISWGRFAELLADNRSFSKEEAELFDASAQHAYESFRNKAASS 539 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK--IKDWNP 254 R++ + ++ GR+W+G A KV L+D +GG + + + Sbjct: 540 RDMDVEDMQAVAQGRVWSGNAAIKVKLVDALGGVNRAIAMARHAAGIPAEEPVTVVELGK 599 Query: 255 PKNYWFCDLKNLSISSLL 272 + + +++ L Sbjct: 600 VRPSPTALIGGGAMAGAL 617 Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 75/218 (34%), Gaps = 13/218 (5%) Query: 34 NSPHVARIAIRGQIEDSQ-----------ELIERIERISRDDSATALIVSLSSPGGSAYA 82 V + G I D + L + + + + D + + ++ Sbjct: 99 KKDSVLAFKLEGDISDQERTFFDSGTSLPALCQALRKAALDPRIQGVAIEIAPLAIGWGK 158 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + I R I + + A Y ++ A + + A ++ + G + +++ Sbjct: 159 VQEIKRHIDYFRASGKYCVAYMKQAGEKEYYLATACSEMYAPPSAYLSLRGFVTGGTFLR 218 Query: 143 PFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 LDK+GV + + K+ + + + + + + F+R VS + Sbjct: 219 GVLDKVGVEPQVKRIGAYKSAGDQLLRRTMASEQREQLGAIQADVVEEFLRQVSTALGKS 278 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 + + + ++ A K G + + ++++ L Sbjct: 279 RQEVVEFVEAGVYDTAAFKAGGWLTDLWYEDQLINELK 316 >gi|84393631|ref|ZP_00992383.1| protease IV [Vibrio splendidus 12B01] gi|84375772|gb|EAP92667.1| protease IV [Vibrio splendidus 12B01] Length = 616 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 73/274 (26%), Positives = 125/274 (45%), Gaps = 16/274 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 + S VA I G I D + + DD A+++ + SPGGS Sbjct: 318 PDLTSESHDVAVIVASGAIMDGKQPRGTVGGDTTAALLRQARNDDKVKAVVLRVDSPGGS 377 Query: 80 AYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A+A E I I+ + + KPV+ + +AAS GY IS ++ I+A T+L GSIG+ Sbjct: 378 AFASEVIRNEIEAIKQAGKPVVVSMSSLAASGGYWISMGADKILAQPTTLTGSIGIFSVI 437 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L+ +GV V +SP + ++ A Q +++ Y F+ LV E+R Sbjct: 438 TTFEKGLNDIGVYTDGVGTSPFSGLGIT-TGLSDGAKDAFQMGIENGYRRFISLVGENRG 496 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKDWNPPK 256 + D ++ GR+WTG +A + GL+D +G ++ + +L +I +++ Sbjct: 497 MEVDAVDKIAQGRVWTGQDAIQKGLVDEIGDFDDAIAAAASLAELETYNIYWVEEPLSTT 556 Query: 257 NYWFCDLKN---LSISSLLEDTIPLMKQTKVQGL 287 + + N +SI ++ IP Q Q L Sbjct: 557 EQFIQEFMNQVQMSIGFDIQSMIPSSLQPVTQQL 590 Score = 95.8 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 97/282 (34%), Gaps = 37/282 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYF-SWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + FV + + +LS+ + VYF S ++ + + G I + Sbjct: 19 ITFVRLALVNLFFLLSIAIIYFVYFHSDTTQPTVPQESALVLNLSGPIVEQSRYINPMDS 78 Query: 52 -----------------ELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKV 93 +++E I DD+ T ++++ P + I +A+ + Sbjct: 79 VTGSLLGKDLPKENVLFDIVETIRYAKDDDNVTGIVLALKELPETNLTKLRYIAKALNEF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K I V + + Y ++ + + + V G Y K L+KL V+ Sbjct: 139 KATGKPIYAVGDFYNQSQYYLASYATKVFLSPDGGVLLKGYSAYSLYYKTLLEKLDVNTH 198 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL------ 205 + K+ PF +++ A + + + +V VS +R I Sbjct: 199 VFRVGTYKSAIEPFIRDDMSDAAKESASRWLGQLWGAYVDDVSNNRQIDAKTLNPSMDSF 258 Query: 206 --VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 L A+K+GL+D + +++V L + Sbjct: 259 LKDLESVDGDIAKLAEKLGLVDELATRQQVRLELADVFGSDG 300 >gi|188586361|ref|YP_001917906.1| Acid phosphatase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351048|gb|ACB85318.1| Acid phosphatase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 566 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 109/231 (47%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLS 74 + LV + + S N P + I G+ + E++ ++ + +IV + Sbjct: 288 VGLVKIEGMIIDGRSKAPQNYPPIPIPLIAGERAGDLTITEQLRKLGANPKIKGIIVFID 347 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 S GGSA A E+I I+ + +KPVI + E AAS GY ++ ++ IV+ T+L GSIGV Sbjct: 348 SGGGSALASESIAYTIRSITRQKPVIALLGEKAASGGYYVASQADYIVSYPTTLTGSIGV 407 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + L+KL ++ + + N + + MQ+ + +Y+ F+ V Sbjct: 408 VAGKAVNTNLLNKLLINREINVRGNSREMFYSHRVFNDREREKMQEGLMRTYNLFLERVC 467 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 E R + + ++ G++WTG +A GL+D +GG EE + L Sbjct: 468 EGRKMTKAQLDPIAKGKVWTGEQALAKGLVDELGGFEETKVKMKELTGLSK 518 Score = 79.3 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 105/242 (43%), Gaps = 10/242 (4%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 L ++++ IS D T +++ ++ + + A++ +KN + + +++G Sbjct: 62 NLKKQLKTISNDPRLTGVVLKQTNFNIPYTYLDEVIDALKILKNNNKKLYSWAKNYSTSG 121 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSE 169 Y ++ + I + +G L + ++K L++LG+ K SP K + S Sbjct: 122 YFLASYCDEIFLQPGGKIDELGFLNESFFLKDALNQLGIEFDIFKISPYKTASDFLIRSN 181 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 + +A +M Q +++S Y F+ +S R + L + +T E+ ++GLID + G Sbjct: 182 SSKEAREMNQWIMNSIYDNFINNISWGRKKTKQEMEELVNNAPYTDNESLELGLIDKILG 241 Query: 230 QEEVWQSL-----YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 +E++ + L Q KI+++ + S S+ + ++ + Sbjct: 242 EEDLVKFLKPLDKKESKKIQHSIKIENFKSAHKKLYPPRPKKSKGSV---GLVKIEGMII 298 Query: 285 QG 286 G Sbjct: 299 DG 300 >gi|319408201|emb|CBI81854.1| protease [Bartonella schoenbuchensis R1] Length = 283 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 118/267 (44%), Gaps = 19/267 (7%) Query: 38 VARIAIRGQIEDSQELIER----------IERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + + + G I DS + R +++ D A A+++ ++SPGGS IF Sbjct: 20 IPVVRLHGAIMDSNSFMARTLSLGRCAPLLDKAFADKKAPAVVLIINSPGGSPVQSRLIF 79 Query: 88 RAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + I+ + N K + + ++AAS GY+I+CA + I A +S+VGSIGV+ L Sbjct: 80 QRIRDLANEKNKQVLVFIEDVAASGGYMIACAGDEIFADPSSVVGSIGVVSASFGFPELL 139 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV + + K PF V+ ++ + + F+ LV E R Sbjct: 140 KKIGVERRVYTAGKNKVVLDPFQPEKKMGVEHLKSLQLEVHQTFIDLVKERRASKLSDDS 199 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 + G W+G + ++GL+D +G V + + K++ +P K+++ + + Sbjct: 200 DIFTGMFWSGKKGVELGLVDQLGDVRSVIKDRFGY-----DTKLRLISPSKSFFGPKMPS 254 Query: 266 LSISSLLEDTIPLMKQTKVQGLWAVWN 292 + ++ + + A+W Sbjct: 255 GVTADMVYTAVDSAWMAAEE--RALWQ 279 >gi|33861736|ref|NP_893297.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33640104|emb|CAE19639.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 269 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 67/239 (28%), Positives = 120/239 (50%), Gaps = 4/239 (1%) Query: 33 DNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + +ARI I I S +++ +++I D ALI+ + SPGG+ + I+ AI Sbjct: 8 KSKKRMARIVIDEPITSSTRVSVLKALKQI-EDREFPALILRIDSPGGTVGDSQEIYSAI 66 Query: 91 QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++K + V+ ++AS G I AS+ IVA ++ GSIGV+ + + L+K+G Sbjct: 67 KRLKEKGCKVVASFGNISASGGVYIGVASDKIVANPGTITGSIGVIIRGNNLSELLNKIG 126 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + ++VKS K SP ++ + +++Q +++ SY F VSE RN+ D +D Sbjct: 127 IKFETVKSGIYKDILSPDKPLSKEGRELLQGLINESYKQFTEAVSEGRNLLVDDVKKFAD 186 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 GRI+TG +AK +GL+D +G + + + + + K + I Sbjct: 187 GRIFTGTQAKDLGLVDKIGDEFVARELAAEMVNIDPKIQPVTFGKKKKKILGLIPGSRI 245 >gi|284117617|ref|ZP_06386744.1| protease IV [Candidatus Poribacteria sp. WGA-A3] gi|283829490|gb|EFC33855.1| protease IV [Candidatus Poribacteria sp. WGA-A3] Length = 785 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 58/253 (22%), Positives = 106/253 (41%), Gaps = 16/253 (6%) Query: 32 EDNSPHVARIAIRGQI---------------EDSQELIERIERISRDDSATALIVSLSSP 76 + P VA I G + + + ++ + DDS A+++ + S Sbjct: 456 QVPQPKVAIIKAEGLMLTGDSFVDPFMGTQVMGADTITRIVKEVKDDDSVKAVVLRIDSG 515 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GG A + I+R + ++K KP++ + ++AAS GY I+ ++ IVA ++ GSIGV+ Sbjct: 516 GGLVVAADTIWRELVRLKEVKPLVVSMGDVAASGGYYIAAPADTIVAEPGTITGSIGVIG 575 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 K +KLG+ + +K + + + ++Q + Y F V+ Sbjct: 576 GKYSFKGLYEKLGIHKEILKRGQHADFYTDYGDYPLAEKAIVQKQIKEIYDDFTEKVALG 635 Query: 197 R-NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 R + + L GR+W+G +AK+ GL+D +GG P Sbjct: 636 RTELTVEDVDRLGRGRVWSGRQAKENGLVDELGGLSLAIAIAREHAKLGEKSVEIIEFPK 695 Query: 256 KNYWFCDLKNLSI 268 K + L L + Sbjct: 696 KTWMSELLSGLGV 708 Score = 85.4 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 78/192 (40%), Gaps = 2/192 (1%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + L + + DD ++V + G + + AI + V+ ++ Sbjct: 241 RSLKQVLPIAKWDDDVAGILVRIDGSGYGIAQLQEMSDAILDFRESGRVVFCYLSNCSTG 300 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFS 168 Y+++ A + I+ ++ V IG+ ++ + K LD LG+ K+ + Sbjct: 301 DYMVASACDGILIQPSAEVRLIGIRTEHSFYKGALDLLGIRANLEHLGEYKSASDAFTRR 360 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 +++ ++ ++D Y VR ++E R + D +T +A V L+D + Sbjct: 361 DMSKAHREIQNIILDDLYDQLVRAIAEGRGWTRESVRKRIDEGPYTARQAFAVELVDRLV 420 Query: 229 GQEEVWQSLYAL 240 ++E+ + L Sbjct: 421 YEDELLDVVTEL 432 >gi|289765650|ref|ZP_06525028.1| protease IV [Fusobacterium sp. D11] gi|289717205|gb|EFD81217.1| protease IV [Fusobacterium sp. D11] Length = 578 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 67/271 (24%), Positives = 119/271 (43%), Gaps = 23/271 (8%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLS 74 ++E ++ V I + G I +S+ E +E++ +D A+++ ++ Sbjct: 295 EENLESSNNVVYVIPLEGDIVESETEVFAGEENINVAETLEKLNIAKENDKIKAVVLRIN 354 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGGSA + I I+++ + KPV + +AAS GY IS ++ I ++ GSIGV Sbjct: 355 SPGGSALTSDIIAEKIKELASEKPVYVSMSSVAASGGYYISANADKIFVDRNTITGSIGV 414 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + P + GV+I+ + S + K + + Y F+ +VS Sbjct: 415 VSILPDFSKLITDNGVNIEKISEGEYSDLYSSDT-FTEKKYNKIYNSNLKVYDDFLNVVS 473 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK---- 250 ++R I +K +++GRIWTG EA K+GL D +GG E + + Sbjct: 474 KARKIDKEKLKTIAEGRIWTGEEAVKIGLADEIGGLNEAIYGIAEDNDMDEYSIVVAKDK 533 Query: 251 -----DWNPPKNYWFCDLKNLSISSLLEDTI 276 + Y D K+L + +D + Sbjct: 534 FELGNIYKKYSRYIKMDTKDLIKEKIFKDYL 564 Score = 66.2 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 10/210 (4%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASA 110 L++ +E S DD +I+ ++ S E + + + K +I + Sbjct: 84 TLLQSVENASYDDRVEGIILKMNGDSLSYAQSEELAHELSMARAADKKIIAYFENVGRKN 143 Query: 111 GYLISCASNIIVAAETSLVGSIGVLF-QYPYVKPFLDKLGVSIKSVKSSPMKAEPS--PF 167 YL S A+ I + + S +I F + Y+K DK GV + K+ Sbjct: 144 YYLASYANEIYMPSANSTNVNIYPYFREEFYIKKLADKFGVKFNIIHVGDYKSYMENLAS 203 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA---EAKKVGLI 224 S ++ +A + ++D +Y+ F+ +VS +R + D + A + LI Sbjct: 204 STMSKEAREDTVRILDKNYNNFLDIVSLNRKLNRDDLDKIIKDGDLVAASSVDLMNNKLI 263 Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 D + + + G I I+D+ Sbjct: 264 DKYAYWDNIISMV---GGKDKIITIQDYTK 290 >gi|256027690|ref|ZP_05441524.1| protease IV [Fusobacterium sp. D11] Length = 589 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 67/271 (24%), Positives = 119/271 (43%), Gaps = 23/271 (8%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLS 74 ++E ++ V I + G I +S+ E +E++ +D A+++ ++ Sbjct: 306 EENLESSNNVVYVIPLEGDIVESETEVFAGEENINVAETLEKLNIAKENDKIKAVVLRIN 365 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGGSA + I I+++ + KPV + +AAS GY IS ++ I ++ GSIGV Sbjct: 366 SPGGSALTSDIIAEKIKELASEKPVYVSMSSVAASGGYYISANADKIFVDRNTITGSIGV 425 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + P + GV+I+ + S + K + + Y F+ +VS Sbjct: 426 VSILPDFSKLITDNGVNIEKISEGEYSDLYSSDT-FTEKKYNKIYNSNLKVYDDFLNVVS 484 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK---- 250 ++R I +K +++GRIWTG EA K+GL D +GG E + + Sbjct: 485 KARKIDKEKLKTIAEGRIWTGEEAVKIGLADEIGGLNEAIYGIAEDNDMDEYSIVVAKDK 544 Query: 251 -----DWNPPKNYWFCDLKNLSISSLLEDTI 276 + Y D K+L + +D + Sbjct: 545 FELGNIYKKYSRYIKMDTKDLIKEKIFKDYL 575 Score = 66.2 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 10/210 (4%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASA 110 L++ +E S DD +I+ ++ S E + + + K +I + Sbjct: 95 TLLQSVENASYDDRVEGIILKMNGDSLSYAQSEELAHELSMARAADKKIIAYFENVGRKN 154 Query: 111 GYLISCASNIIVAAETSLVGSIGVLF-QYPYVKPFLDKLGVSIKSVKSSPMKAEPS--PF 167 YL S A+ I + + S +I F + Y+K DK GV + K+ Sbjct: 155 YYLASYANEIYMPSANSTNVNIYPYFREEFYIKKLADKFGVKFNIIHVGDYKSYMENLAS 214 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA---EAKKVGLI 224 S ++ +A + ++D +Y+ F+ +VS +R + D + A + LI Sbjct: 215 STMSKEAREDTVRILDKNYNNFLDIVSLNRKLNRDDLDKIIKDGDLVAASSVDLMNNKLI 274 Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 D + + + G I I+D+ Sbjct: 275 DKYAYWDNIISMV---GGKDKIITIQDYTK 301 >gi|240103706|ref|YP_002960015.1| Signal peptide peptidase SppA (sppA) [Thermococcus gammatolerans EJ3] gi|239911260|gb|ACS34151.1| Signal peptide peptidase SppA (sppA) [Thermococcus gammatolerans EJ3] Length = 329 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 112/252 (44%), Gaps = 3/252 (1%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL--IERIERISRDDSATALIVSLSSP 76 +L + +A + I G IE L + +E++ +DDS +++ + SP Sbjct: 68 SLIRAIEMERGGTNVTNATIALVPIFGVIEGQTALNTVTTLEKLMKDDSVGGVLLWIESP 127 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GG A I+ +Q ++ +KPV+ +AAS GY I+ + I+A + VGSIGV++ Sbjct: 128 GGDVGAVREIYHEVQVLRAKKPVVAYTGGIAASGGYYIAVGAERIIADPLAEVGSIGVIY 187 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + + G+ + K+ P K + + + + + ++D+ + F++ VS Sbjct: 188 VHFNLADNYASNGIKVDVFKTGPHKDMGAEWRALTEYERKKIWGMIDAYFQSFLQAVSMG 247 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 RN+ ++T + G W + L+D G + + L L +S +P + Sbjct: 248 RNMTLNETREYATGETWLAIK-VNGTLVDETGNFQTAVEELEKLMGVESAEIKVYGSPTQ 306 Query: 257 NYWFCDLKNLSI 268 +Y ++ Sbjct: 307 SYSLGVFGEGAL 318 >gi|332297292|ref|YP_004439214.1| signal peptide peptidase SppA, 36K type [Treponema brennaborense DSM 12168] gi|332180395|gb|AEE16083.1| signal peptide peptidase SppA, 36K type [Treponema brennaborense DSM 12168] Length = 370 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 65/256 (25%), Positives = 120/256 (46%), Gaps = 10/256 (3%) Query: 26 SWSSHVEDNSPHVARIAIRGQIE------DSQELIERIERISRDDSATALIVSLSSPGGS 79 + ++A ++I G IE D Q L++ I ++ D +++ + SPGG Sbjct: 79 FGTKPRFSLKEYLAVVSIEGVIEEKNDTYDQQWLLDTIGALAADSKNVGILLYIDSPGGG 138 Query: 80 AYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-F 136 Y + ++ + K K PV+ + +AAS GY I+CA++ ++A +L GSIGV+ Sbjct: 139 VYQSDEVYLELVKYKETTGNPVLAYLGPLAASGGYYIACAADYLIANRNTLTGSIGVISG 198 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 Q + +DK G+ + + + K S + + +MQ + D Y F +V+ES Sbjct: 199 QSVDLSALMDKYGIKMNTFTAGRNKDMLSINRPLTEEQRSIMQSIADECYDQFTGIVAES 258 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP- 255 R + ++ L+DGR++T A+A + GLID + + L + + + P Sbjct: 259 RGLDIEQVTALADGRVYTAAQALEHGLIDEIARYGDAVDILLNDVFENPALETVWFAPES 318 Query: 256 KNYWFCDLKNLSISSL 271 K + L N ++ Sbjct: 319 KTSLYRYLMNARAAAG 334 >gi|260494226|ref|ZP_05814357.1| signal peptide peptidase SppA, 67K type [Fusobacterium sp. 3_1_33] gi|260198372|gb|EEW95888.1| signal peptide peptidase SppA, 67K type [Fusobacterium sp. 3_1_33] Length = 589 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 67/271 (24%), Positives = 119/271 (43%), Gaps = 23/271 (8%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLS 74 ++E ++ V I + G I +S+ E +E++ +D A+++ ++ Sbjct: 306 EENLESSNNVVYVIPLEGDIVESETEVFAGEENINVAETLEKLNIAKENDKIKAVVLRIN 365 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGGSA + I I+++ + KPV + +AAS GY IS ++ I ++ GSIGV Sbjct: 366 SPGGSALTSDIIAEKIKELASEKPVYVSMSSVAASGGYYISANADKIFVDRNTITGSIGV 425 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + P + GV+I+ + S + K + + Y F+ +VS Sbjct: 426 VSILPDFSKLITDNGVNIEKISEGEYSDLYSSDT-FTEKKYNKIYNSNLKVYDDFLNVVS 484 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK---- 250 ++R I +K +++GRIWTG EA K+GL D +GG E + + Sbjct: 485 KARKIDKEKLKTIAEGRIWTGEEAVKIGLADEIGGLNEAIYGIAEDNDMDEYSIVVAKDK 544 Query: 251 -----DWNPPKNYWFCDLKNLSISSLLEDTI 276 + Y D K+L + +D + Sbjct: 545 FELGNIYKKYSRYIKMDTKDLVKEKIFKDYL 575 Score = 66.2 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 10/210 (4%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASA 110 L++ +E S DD +I+ ++ S E + + + K +I + Sbjct: 95 TLLQSVENASYDDRVEGIILKMNGDSLSYAQSEELAHELSMARAADKKIIAYFENVGRKN 154 Query: 111 GYLISCASNIIVAAETSLVGSIGVLF-QYPYVKPFLDKLGVSIKSVKSSPMKAEPS--PF 167 YL S A+ I + + S +I F + Y+K DK GV + K+ Sbjct: 155 YYLASYANEIYMPSANSTNVNIYPYFREEFYIKKLADKFGVKFNIIHVGDYKSYMENLAS 214 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA---EAKKVGLI 224 S ++ +A + ++D +Y+ F+ +VS +R + D + A + LI Sbjct: 215 STMSKEAREDTVRILDKNYNNFLDIVSLNRKLNRDDLDKIIKDGDLVAASSVDLMNNKLI 274 Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 D + + + G I I+D+ Sbjct: 275 DKYAYWDNIISMV---GGKDKIITIQDYTK 301 >gi|114776783|ref|ZP_01451826.1| protease IV [Mariprofundus ferrooxydans PV-1] gi|114552869|gb|EAU55300.1| protease IV [Mariprofundus ferrooxydans PV-1] Length = 609 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 64/274 (23%), Positives = 132/274 (48%), Gaps = 12/274 (4%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSP 76 + S ++ V I G I D ++ ++E +++ D++ A+++ + SP Sbjct: 302 AVSEKEHKHAGRVGIIVASGMILDGEQPPGSIGSDTMVEMLQQAREDNAIKAVVLRIDSP 361 Query: 77 GGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 GGSA A E I AI +++ KPV+ + +AAS GY ++ +N I A+ T++ GSIG Sbjct: 362 GGSAQASEEIRTAIMRLQKAGKPVVVSMGGVAASGGYWMAAPANEIWASPTTITGSIGAF 421 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 ++ L++LG+ + ++ + P + P+ ++MQ + Y F+ +V+ Sbjct: 422 GVMLNLQQGLEQLGIHSDGLGTTTIAGGMRPDRAMPPELSRVMQLTISDVYQHFLSVVAS 481 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 R + + +++GR+W+G +A+++GL+D +GG ++ ++ L P Sbjct: 482 GRKMDKSRVAAIAEGRVWSGLDAQRLGLVDHLGGFDDAIKAAARLAALGDDYGRSWIRAP 541 Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + L + + + P + Q + L A Sbjct: 542 EGLGEMLLSRIVGET--DALFPGVWQGMNRLLMA 573 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 38/276 (13%), Positives = 94/276 (34%), Gaps = 37/276 (13%) Query: 14 MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS----------------------Q 51 + LV + V ++H + + GQI + Sbjct: 23 LFLLVIMVFVAVMLTAHPKVPDQAALVLDPHGQIVEELELPSPLTMSLTGAAPMGQTRLH 82 Query: 52 ELIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 +L I + D +++ L S + + RAI+ + ++ + Sbjct: 83 DLTAAIRDAAGDKRIRLMVLKLDDMSRSSLPVLQELRRAIEAFRATGKMVIAEGPNYTQS 142 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FS 168 Y ++ A+N + V G Y++ LDKL ++ + ++ K+ P + Sbjct: 143 QYYLAAAANTVFLHPMGYVAIEGFSIYRNYIRDALDKLHITAEVFRAGKYKSAIEPLLRN 202 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV--------LSDGRIWTGAEAKK 220 +++ + ++ + + +++ ++ RN+ + L+D AK Sbjct: 203 DMSDADREANGALLKTLWGSYLKDIARMRNLRPQRLQQVLDTPSRYLNDYHGNLAELAKG 262 Query: 221 VGLIDVV---GGQEEVWQSLYALG-VDQSIRKIKDW 252 GL+D + G ++ + + +D+ Sbjct: 263 EGLVDELADQGTIDDYIAGAMDIEQGEYPAIAFRDY 298 >gi|103487702|ref|YP_617263.1| signal peptide peptidase SppA, 67K type [Sphingopyxis alaskensis RB2256] gi|98977779|gb|ABF53930.1| signal peptide peptidase SppA, 67K type [Sphingopyxis alaskensis RB2256] Length = 661 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 75/269 (27%), Positives = 126/269 (46%), Gaps = 10/269 (3%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSAT 67 + + + ++ + +A + + G I D + + E I + D S Sbjct: 325 FNAIPLENWVAANPPAEKGSAIAVVPVVGDIVDGEAPTGLAGGTTIAEHILDAATDSSVK 384 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAET 126 A+++ + SPGGS A E I +A+ K RK PV+ + +AAS GY IS ++ I A Sbjct: 385 AIVLRVDSPGGSVLASEEIRQALLAAKARKLPVVVSMANVAASGGYWISTPADRIFAEPE 444 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 ++ GSIGV P L K+GV+ + ++P+ +P F VN + + Q V+ Y Sbjct: 445 TITGSIGVFGILPSFDRALAKIGVNADGIATTPLSGQPDIFGGVNEEFNALAQASVEDVY 504 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 F LV++SR P DK L +++GR+W G A+++GL+D GG E + L + Sbjct: 505 TRFTGLVAKSRKQPLDKILPIAEGRVWAGGTARQLGLVDQFGGLPEALAAAAKLAKVEGD 564 Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 + + + L N S + E Sbjct: 565 FHARYFEEEPSELSRLLANWSGAGEEETA 593 Score = 70.0 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 38/245 (15%), Positives = 84/245 (34%), Gaps = 30/245 (12%) Query: 39 ARIAIRGQIEDS---------------------QELIERIERISRDDSATALIVSLSSPG 77 I + G + + ++++ +E + D T++++ L Sbjct: 82 LLIELDGIVTEQPTETDPFAALSGGPQLKEIRTRDVVHALETAASDKRITSVVLDLDRFL 141 Query: 78 GSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 G I AI KV+ +K + + Y I+ ++ I A V G Sbjct: 142 GGGQVSLAEIGGAIDKVRAKKKPVLAFATAYTTDSYQIAAHASEIWADSIGGVAIAGPGG 201 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVS 194 Y K +D+LG++ + K+ P+ S+ +P+A + + ++ V Sbjct: 202 SRLYYKGLMDRLGITANIYRVGTFKSAVEPYLRSDQSPEAKEANLAYASVLWDNWLADVK 261 Query: 195 ESR------NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 ++R D + + GL+D +G + + + + K Sbjct: 262 KARPAAKLDAYIADTVGAVRAAGNDLSKASLDAGLVDRLGSRMAFSRRVAEISGATDEGK 321 Query: 249 IKDWN 253 ++N Sbjct: 322 PWEFN 326 >gi|320334156|ref|YP_004170867.1| peptidase S49 [Deinococcus maricopensis DSM 21211] gi|319755445|gb|ADV67202.1| peptidase S49 [Deinococcus maricopensis DSM 21211] Length = 545 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 56/273 (20%), Positives = 110/273 (40%), Gaps = 21/273 (7%) Query: 28 SSHVEDNSPHVARIAIRGQIE-------------------DSQELIERIERISRDDSATA 68 + VA +++ G I S ++ + R D + A Sbjct: 261 APRRAKGDGRVAVVSVEGSIVTGRSRNNPLPIPLVGGAMAGSDTVVAALRRAKADKATRA 320 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 +++ + SPGGSA A + I+R +Q + KPV+ + +AAS GY + + I+A+ ++ Sbjct: 321 IVLYVDSPGGSALASDLIWREVQ--TSEKPVVAVMGAVAASGGYYVVAGAQRILASPYTI 378 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIGV+ P ++ F + G++ + V S + + +++ ++ Y Sbjct: 379 TGSIGVVTGKPVLEAFNARHGLNPERVARQEHALMYSSSRPFSEGELALVERSIEEVYAR 438 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 F V+ R + + L GRIW+G +A GLID +G + L Sbjct: 439 FTARVAAGRKLSVARVDELGRGRIWSGQDALTHGLIDELGDLRAGVERACELAGLPYGSA 498 Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 + + P+ + + + + + Sbjct: 499 VWHVDAPRGGKLPEFAREAAGVTFTPVLAELFR 531 Score = 50.0 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 74/182 (40%), Gaps = 3/182 (1%) Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 ++E++ +++ A+ RAI ++ K + V + A+ Sbjct: 61 AKLEKLGNAPWLHGVLLRFGELTCGLVRARALARAIARLNEHKRTVAFVPHLNATTLLAA 120 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNP 172 S A I + E++ V G + Y+ FL K GV+ ++V+ KA ++ Sbjct: 121 SGA-REITSPESAEVMLQGFAMETTYLGAFLKKHGVAFENVRIREFKAALTRFSDEGMDA 179 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 + + ++ + +V ++ +R +P D + + A+ GLID V ++E Sbjct: 180 HNREQLSALLAGTEAAWVEELARARRVPEDTVRGWLTDPVTSADGARARGLIDRVAYEDE 239 Query: 233 VW 234 + Sbjct: 240 LV 241 >gi|153853725|ref|ZP_01995081.1| hypothetical protein DORLON_01072 [Dorea longicatena DSM 13814] gi|149753475|gb|EDM63406.1| hypothetical protein DORLON_01072 [Dorea longicatena DSM 13814] Length = 327 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 120/266 (45%), Gaps = 20/266 (7%) Query: 34 NSPHVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGS 79 + ++A + + G I++ + I+ + D + +++ + SPGG+ Sbjct: 54 SEDYIAIVRVEGTIQEQSGSSILEASSGYQHDSTMNYIDELMDDSNNKGILLYVDSPGGT 113 Query: 80 AYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 Y E +++ +++ K ++P+ + AAS GY++S AS+ I A + GSIGV+ Sbjct: 114 VYESEELYQKLKEYKETTKRPIWDYMAHYAASGGYMVSMASDKIYANSNTTTGSIGVIMS 173 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + KLG+ S+ S K S+ + + + QD ++ +Y FV +V++ R Sbjct: 174 GYDMSGLYKKLGIRYVSITSGKNKDS----SKFTDEQIAIYQDQINEAYEEFVNIVADGR 229 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 ++ + L+DGR +T +AK GLID + ++ ++ + +++ Sbjct: 230 DMSVEDVKKLADGRTYTAKQAKNNGLIDEISLYPDMKDAMSKKLGTSTFYEMESDEGLLQ 289 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTK 283 F ++L S + K + Sbjct: 290 SLFSKAESLVPKSEAQVLTETAKSVE 315 >gi|257054169|ref|YP_003132001.1| ClpP class periplasmic serine protease [Saccharomonospora viridis DSM 43017] gi|256584041|gb|ACU95174.1| ClpP class periplasmic serine protease [Saccharomonospora viridis DSM 43017] Length = 300 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 60/262 (22%), Positives = 113/262 (43%), Gaps = 21/262 (8%) Query: 29 SHVEDNSPHVARIAIRGQIE------------DSQELIERIERISRDDSATALIVSLSSP 76 + V+ + + G I + + ++R + A+ + ++SP Sbjct: 35 GDRAERKDVVSVVKLHGVITPQASPLAARGVINLASVESALKRAFGHERLKAVALQINSP 94 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG+ + I+++ + K PVI ++AAS GY ++CA++ I A TSLVGSIGV Sbjct: 95 GGAPTQSGLVAERIRQLADDKGVPVIAFAEDVAASGGYWLACAADEIYAHRTSLVGSIGV 154 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + L++ G+ + S K+ PFS P+ V+ + + + FV V Sbjct: 155 VTNSFGFARLLERFGIERRLYTSGEAKSRLDPFSPEKPEDVEWLNKLHTQLHDLFVEWVK 214 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + R ++ L +G +W G +A ++GL+D +G ++ + Y Sbjct: 215 QRRGSRLAESEELFNGDVWLGPKALELGLVDGLGNLRDIVKQRYPEAEIV-------VAE 267 Query: 255 PKNYWFCDLKNLSISSLLEDTI 276 PK L S ++ + D + Sbjct: 268 PKKPLLAKLGVGSPAAAVLDAV 289 >gi|317051685|ref|YP_004112801.1| signal peptide peptidase SppA, 36K type [Desulfurispirillum indicum S5] gi|316946769|gb|ADU66245.1| signal peptide peptidase SppA, 36K type [Desulfurispirillum indicum S5] Length = 326 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 65/278 (23%), Positives = 125/278 (44%), Gaps = 19/278 (6%) Query: 35 SPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSPGGSAY 81 + I I+G I + QE++ ++ RD A+I+++ +PGG+ Sbjct: 46 QDKILVIPIQGFISSTPREGMLTTKPSLVQEVVAHLDMARRDPLIRAVILTVDTPGGTTV 105 Query: 82 AGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + ++ I++ + PV+ + MA S GY IS AS++I A ++ GS+G +F P Sbjct: 106 DSDILYHEIERFRLETGTPVVVSLMGMATSGGYYISLASDLITAHPATITGSVGTIFIRP 165 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 V ++KLG+ + +S +K SPF P +++Q +VD +F+ LV + R + Sbjct: 166 KVHGLMEKLGLEAQVTRSGSLKDMGSPFRPELPAEQELIQQMVDDVNGFFLELVQQRRRL 225 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP---- 255 + ++ RI+T ++A +VGLID V V + ++ + Sbjct: 226 SAEHMADVASARIYTASQALEVGLIDEVLHFPRVLTRAAEISGASPDARVVVYRRSAYAN 285 Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 N + + +L++ + G + +W P Sbjct: 286 DNVYNTMTNSAPGPALVDFGFVGHMASLKSGFYYLWAP 323 >gi|257125230|ref|YP_003163344.1| signal peptide peptidase SppA, 67K type [Leptotrichia buccalis C-1013-b] gi|257049169|gb|ACV38353.1| signal peptide peptidase SppA, 67K type [Leptotrichia buccalis C-1013-b] Length = 594 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 61/274 (22%), Positives = 122/274 (44%), Gaps = 20/274 (7%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVSLSS 75 + + +A I G I ++++IE+ ++ + +++ ++S Sbjct: 298 YEKTGNSRNGTIAVIYAEGSILYDANGVTEGTITPDNILQKIEKATQTKNLKGIVLRVNS 357 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 GGSA A E I++ + K+ + PV + + AAS GY IS A + A ++ GSIGV+ Sbjct: 358 GGGSALASEVIYQELSKL--KIPVYVSMADTAASGGYYISTAGKKVFANSATITGSIGVV 415 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 P + DK GV S+ F+ ++ ++ + ++ +Y F VS+ Sbjct: 416 SMLPKLYNAQDKYGVRSNSISKGRYSDINDSFAPLSEESRAKISQSMEETYKEFKSRVSK 475 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 +R I + + G+IW G EAK + L+D + +EV + + + +++ Sbjct: 476 NRKIDENTLENYAQGKIWLGDEAKDIKLVDGIASLDEVIKIMAKDLNLRKNYAVENIYLE 535 Query: 256 KNYWFCDLK-------NLSISSLLEDTIPLMKQT 282 +++ ++S+ LE +IP K+ Sbjct: 536 EDFSQKLKSLSNMITAKFNLSAQLEKSIPQAKKA 569 Score = 66.2 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 95/212 (44%), Gaps = 9/212 (4%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 +++ ++ I ++ ++++L + S+ E + + +++K + ++ Sbjct: 86 DILNSLDDIKNNNQVKGVVIALDTINLSSAKIEELIKKFEELKANNKKVYAFGAYITNSN 145 Query: 112 YLISCASNI--IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE--PSPF 167 Y ++ ++ +V + ++ + G + Y K DK+GV+++ V+ K+ Sbjct: 146 YKLASIADEVVMVPSASASLDLTGYHYSDLYYKGLFDKIGVNMEVVRIGNYKSYGEEYIG 205 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRI--WTGAEAKKVGLI 224 +++ P+ + ++++ Y+ F+ V+++R + + + +G I T A+ GL+ Sbjct: 206 NDMTPELRSELTRILENRYNKFITDVAKNRKVDKNALNNDIVNGNITNLTPFSARDKGLV 265 Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 D + + L + +I I D+ + Sbjct: 266 DKLEQFSTFTERL--NIREDNIADITDYYQKR 295 >gi|255036559|ref|YP_003087180.1| signal peptide peptidase SppA, 67K type [Dyadobacter fermentans DSM 18053] gi|254949315|gb|ACT94015.1| signal peptide peptidase SppA, 67K type [Dyadobacter fermentans DSM 18053] Length = 588 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 66/219 (30%), Positives = 117/219 (53%), Gaps = 2/219 (0%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 S++ ++ ++ I +D A+++ ++SPGGSA A + ++R IQ +KPVI + ++AAS Sbjct: 327 SEKFVKELKEIRENDKIKAVVIRINSPGGSALASDVMWREIQLTAKKKPVIASMSDVAAS 386 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK-LGVSIKSVKSSPMKAEPSPFS 168 GY ++ + IVA ++ GSIG+ V F++ LG++ V +SP P+ Sbjct: 387 GGYYMAMGCDTIVAQPNTITGSIGIFGLIFNVTDFMNNKLGITFDGVGTSPHADWPTATR 446 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 E+ M+Q V+ Y F R +E R +P +K L+ GR+W+G EAK+ GL+DV+G Sbjct: 447 EMTEFEKGMIQKSVNEGYETFTRKAAEGRKMPVEKLKSLAQGRVWSGVEAKQNGLVDVLG 506 Query: 229 GQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFCDLKNL 266 G ++ + + +I+ + K + L Sbjct: 507 GVDDAIKLAAKAAKLNEGDYRIRYYPEKKRPLDEMFEKL 545 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 87/214 (40%), Gaps = 5/214 (2%) Query: 41 IAIRGQ--IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 I G+ + +++++ ++ DD + + P E I A+ + K K Sbjct: 69 IPFSGEDNVVGLKDILDALKSAKADDKIKGIYLKTEGPEAGWATLEEIRTALLEFKKSKK 128 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 + E + GY I+ ++ I + G+ +Y + K DKL + + Sbjct: 129 FVVTYGESYSEKGYYIASVADKIYLNPAGGIEWNGLSAEYSFFKGTFDKLEIKPLVFRVG 188 Query: 159 PMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTG 215 K+ E +++ + + +++ + F++ +S SR+IP D+ L+D + Sbjct: 189 EFKSAIEMFSRQDMSEASKKQSVELIGAINDNFLKNISASRSIPVDELKNLADSLAVENP 248 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 A K I +G Q+E+ ++ + + I Sbjct: 249 KAALKYKFITHMGYQDELEAAMKKDLKVAADKSI 282 >gi|15802177|ref|NP_288199.1| protease 4 [Escherichia coli O157:H7 EDL933] gi|12515791|gb|AAG56752.1|AE005399_6 protease IV, a signal peptide peptidase [Escherichia coli O157:H7 str. EDL933] Length = 618 Score = 120 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVZNSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ A ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAK-AAELAKAKQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 99.7 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKADK 306 >gi|332090582|gb|EGI95679.1| signal peptide peptidase SppA, 67K type [Shigella boydii 5216-82] Length = 618 Score = 120 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ A ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAK-AAKLAKVKQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 99.7 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDK 306 >gi|328675284|gb|AEB27959.1| Signal peptide peptidase SppA, 36K type [Francisella cf. novicida 3523] Length = 264 Score = 120 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 111/252 (44%), Gaps = 16/252 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYA 82 S ++ PH+A + + G I + + + + ++ + + +IV ++SPGGS Sbjct: 5 FSSSKELVPHIALVKVNGIIAEDAEANAERINKSLDDAYANKAVKGVIVEINSPGGSPVQ 64 Query: 83 GEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + I+ +Q ++++ P+ ++ AS GY I+ + I A + ++ GSIGV+ Sbjct: 65 SDEIYSHMQYLQHKYPTIPMYAVCTDVCASGGYYIAAGAKDIYANKMTITGSIGVIGSRF 124 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 +DKLG+ + S K PFS + + ++D ++ F+ V +SR Sbjct: 125 GFTGLMDKLGIERRIYTSGKNKDFLDPFSPQKSEQTAQFKKLLDETHQVFIAAVEKSRGD 184 Query: 200 PYDK--TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 G ++G +A+++GLID +++ + + I D+ P + Sbjct: 185 RLKDKSMDTTFSGEPFSGIQAQQMGLIDGFASVDQIRNEKF------NNIDIVDYTRPLD 238 Query: 258 YWFCDLKNLSIS 269 + L S Sbjct: 239 FLTAVSHKLGNS 250 >gi|120402354|ref|YP_952183.1| signal peptide peptidase SppA, 67K type [Mycobacterium vanbaalenii PYR-1] gi|119955172|gb|ABM12177.1| signal peptide peptidase SppA, 67K type [Mycobacterium vanbaalenii PYR-1] Length = 594 Score = 120 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 32/288 (11%) Query: 36 PHVARIAIRGQIE----------------DSQELIERIERISRDDSATALIVSLSSPGGS 79 P +A + + G I + + + R + DD A+++ + SPGGS Sbjct: 301 PKIAVVTVAGPIVSGRGGRQMSPMGGSSSGADTIAAALRRAAADDDIAAIVLRVDSPGGS 360 Query: 80 AYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 E I+R + + + R KPV+ + +AAS GY +S A++ IVA ++ GSIGVL Sbjct: 361 VTGSETIWREVVRTRERGKPVVASMGAVAASGGYYVSMAADAIVANPGTITGSIGVLTGK 420 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + D+LGV +V+++ S + + ++ D Y FV+ V+E R+ Sbjct: 421 LVARELKDRLGVGSDTVRTNANADAWSINAPFTDEQQAHVEAEADLFYRDFVQRVAEGRH 480 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + + ++ GR+WTGA+A + GL+D +GG + L +++ N P + Sbjct: 481 LSVEAVEQVARGRVWTGADALERGLVDELGGLRTAIRRAKVLAGIDEDTRVEVENLPSSS 540 Query: 259 WFCDLK----NLSISSLLEDTIPLMK-----------QTKVQGLWAVW 291 L+ +L ++ L++ + Q + G+ +W Sbjct: 541 LLDVLRPKPSSLPAAASLQEVFGALAIQSVLGIADRTQRSLTGVNVLW 588 Score = 94.3 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 78/236 (33%), Gaps = 9/236 (3%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL-----IERIERISRDDSATALIVSLS 74 + + + +A I G I + L + I R + D LI + Sbjct: 34 ILELDLQSAPPESAGFDPIAVI--SGVIGPGRPLLLREAVAAIHRAAEDPRVAGLIARVQ 91 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 + + AI +KP + + Y ++ A + + VG +G Sbjct: 92 IDAAPPGPVQELRDAIVAFTGKKPSLAWAETYPGTLSYYLASAFGEVWMQPSGTVGLVGF 151 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 +++ LDKLGV + V K+ + +V+ Sbjct: 152 ATSALFLRDALDKLGVQAQFVTRGEYKSAANLFTQDSYTDAHREADTALVNGLRTQVWDA 211 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 V+ SR I L+D +A GL+D +G ++E + + + + + Sbjct: 212 VAASRGIDRAALDALADRAPLLRDDAVTAGLVDRIGFRDEAYARIAEMSGAEGVSP 267 >gi|15831726|ref|NP_310499.1| protease 4 [Escherichia coli O157:H7 str. Sakai] gi|168749412|ref|ZP_02774434.1| protease 4 [Escherichia coli O157:H7 str. EC4113] gi|168762162|ref|ZP_02787169.1| protease 4 [Escherichia coli O157:H7 str. EC4501] gi|195937452|ref|ZP_03082834.1| protease 4 [Escherichia coli O157:H7 str. EC4024] gi|208810557|ref|ZP_03252433.1| protease 4 [Escherichia coli O157:H7 str. EC4206] gi|209400845|ref|YP_002270837.1| protease 4 [Escherichia coli O157:H7 str. EC4115] gi|254793384|ref|YP_003078221.1| protease 4 [Escherichia coli O157:H7 str. TW14359] gi|261227739|ref|ZP_05942020.1| protease 4 [Escherichia coli O157:H7 str. FRIK2000] gi|261258095|ref|ZP_05950628.1| protease 4 [Escherichia coli O157:H7 str. FRIK966] gi|13361939|dbj|BAB35895.1| protease IV [Escherichia coli O157:H7 str. Sakai] gi|188016236|gb|EDU54358.1| protease 4 [Escherichia coli O157:H7 str. EC4113] gi|189367493|gb|EDU85909.1| protease 4 [Escherichia coli O157:H7 str. EC4501] gi|208725073|gb|EDZ74780.1| protease 4 [Escherichia coli O157:H7 str. EC4206] gi|209162245|gb|ACI39678.1| protease 4 [Escherichia coli O157:H7 str. EC4115] gi|209768380|gb|ACI82502.1| protease IV [Escherichia coli] gi|209768382|gb|ACI82503.1| protease IV [Escherichia coli] gi|209768386|gb|ACI82505.1| protease IV [Escherichia coli] gi|254592784|gb|ACT72145.1| protease IV (signal peptide peptidase) [Escherichia coli O157:H7 str. TW14359] gi|320188454|gb|EFW63116.1| Protease IV [Escherichia coli O157:H7 str. EC1212] gi|326342134|gb|EGD65915.1| Protease IV [Escherichia coli O157:H7 str. 1044] Length = 618 Score = 120 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 379 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 438 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 439 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 497 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ A ++ + + Sbjct: 498 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAK-AAELAKAKQWHLEYYVDEPTF 556 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 557 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 585 Score = 99.7 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 79 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 139 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 258 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 259 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKADK 306 >gi|237738354|ref|ZP_04568835.1| protease IV [Fusobacterium mortiferum ATCC 9817] gi|229420234|gb|EEO35281.1| protease IV [Fusobacterium mortiferum ATCC 9817] Length = 572 Score = 120 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 109/242 (45%), Gaps = 12/242 (4%) Query: 27 WSSHVEDNSPHVARIAIRGQI------------EDSQELIERIERISRDDSATALIVSLS 74 + + + +A I G I +++ I++ ++ + +++ L+ Sbjct: 292 YQESILHSQNKIAIIYAEGNILLDGERGGIGNSITPEKINSEIDKALKNPNIKGIVLRLN 351 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGGSA A I +Q+ KP+ + +AAS GY ++ A I A S+ GSIGV Sbjct: 352 SPGGSALASNLIHHKLQEANKIKPIYVSIGGVAASGGYYMASAGQKIFADNESITGSIGV 411 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + P + K+ V+++SVK S + N K + + Y+ F+ +V+ Sbjct: 412 VSLIPNFNELMKKIDVNVESVKKGEYSDLFSLTKDFNGKDREKIYASSVKVYNEFLDVVA 471 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + RN+ + ++ G++W G E K++ L+D +GG E SL S ++ Sbjct: 472 QGRNLNREYVHSIAQGKVWLGEEGKEIDLVDEIGGIENAISSLAKELKIDSYEVVEIVEK 531 Query: 255 PK 256 K Sbjct: 532 EK 533 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 38/276 (13%), Positives = 99/276 (35%), Gaps = 28/276 (10%) Query: 2 EFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIA----------------IRG 45 F++K +++ ++ + Y S + V + I G Sbjct: 24 SFIIKFSLFLILIVGVIGAILKYSSKDETIVLKENSVVVVDLGKEYKEKLEGLPKFLIEG 83 Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 +I + L+ ++ I D+ +++ L + E + +++++ ++ Sbjct: 84 EI-NFYSLLTKLNSIKNDNKVKGVLLKLDNMTLDRGQIEELSGKLEELRKNNKMVLAYAN 142 Query: 106 MAASAGYLISCASNIIVAAETSL--VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 + Y ++ AS+ I+ T V G + Y K DKLG+ + K+ Sbjct: 143 NMNNRNYSLALASDKIIMPPTMSANVNITGYYNELAYYKGLADKLGIKFNVIHVGDYKSY 202 Query: 164 --PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA--EA 218 ++++ + + + + D Y+ F+ + E R I + + G + Sbjct: 203 GENFTKNQMSQEYRENIIRLQDRIYNNFLNKIVEKRKINKNLINNRILAGDFVFSEPYQM 262 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 +K +ID + + + + + + I+ + Sbjct: 263 EKFNMIDEKVYESQ----IKDIIGSERLIPIEKYQE 294 >gi|254718370|ref|ZP_05180181.1| signal peptide peptidase SppA, 36K type [Brucella sp. 83/13] gi|306839601|ref|ZP_07472405.1| signal peptide peptidase SppA, 36K type [Brucella sp. NF 2653] gi|306405299|gb|EFM61574.1| signal peptide peptidase SppA, 36K type [Brucella sp. NF 2653] Length = 235 Score = 120 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 87/198 (43%), Positives = 139/198 (70%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 F + N PH+A++ I G I +++EL++R++RI+ +D+ +I+ L SPGG+ Sbjct: 36 FAFYSLRGAKFNQPHIAKVRIEGTIFENEELLKRLDRIAGNDAVKGVILLLDSPGGTTVG 95 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 GEAI+ A++K+ +KPV+T+V +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + Sbjct: 96 GEAIYDAVRKIAKKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 155 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LD LGV ++++KSSP+KAEP+ FS + +A M++ ++ SY WFV +V E R ++ Sbjct: 156 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRGMIMDSYDWFVGIVQERRAFTHE 215 Query: 203 KTLVLSDGRIWTGAEAKK 220 + L L++G ++TG +A Sbjct: 216 QALALANGAVFTGRQALD 233 >gi|187776034|ref|ZP_02992803.1| protease 4 [Escherichia coli O157:H7 str. EC4196] gi|189010434|ref|ZP_03006318.1| protease 4 [Escherichia coli O157:H7 str. EC4076] gi|189402336|ref|ZP_03006680.1| protease 4 [Escherichia coli O157:H7 str. EC4401] gi|189403499|ref|ZP_03007105.1| protease 4 [Escherichia coli O157:H7 str. EC4486] gi|189405098|ref|ZP_03007686.1| protease 4 [Escherichia coli O157:H7 str. EC869] gi|189406058|ref|ZP_03008051.1| protease 4 [Escherichia coli O157:H7 str. EC508] gi|208816614|ref|ZP_03257734.1| protease 4 [Escherichia coli O157:H7 str. EC4045] gi|208818606|ref|ZP_03258926.1| protease 4 [Escherichia coli O157:H7 str. EC4042] gi|217328805|ref|ZP_03444886.1| protease 4 [Escherichia coli O157:H7 str. TW14588] gi|187769467|gb|EDU33311.1| protease 4 [Escherichia coli O157:H7 str. EC4196] gi|189000232|gb|EDU69218.1| protease 4 [Escherichia coli O157:H7 str. EC4076] gi|189356179|gb|EDU74598.1| protease 4 [Escherichia coli O157:H7 str. EC4401] gi|189360401|gb|EDU78820.1| protease 4 [Escherichia coli O157:H7 str. EC4486] gi|189372021|gb|EDU90437.1| protease 4 [Escherichia coli O157:H7 str. EC869] gi|189376761|gb|EDU95177.1| protease 4 [Escherichia coli O157:H7 str. EC508] gi|208730957|gb|EDZ79646.1| protease 4 [Escherichia coli O157:H7 str. EC4045] gi|208738729|gb|EDZ86411.1| protease 4 [Escherichia coli O157:H7 str. EC4042] gi|217318152|gb|EEC26579.1| protease 4 [Escherichia coli O157:H7 str. TW14588] gi|326343685|gb|EGD67447.1| Protease IV [Escherichia coli O157:H7 str. 1125] Length = 622 Score = 120 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGGS Sbjct: 323 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 382 Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+ Sbjct: 383 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 442 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V+ LD +GV V +SP+ S + P+A QMMQ +++ Y F+ LV+++R+ Sbjct: 443 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQQMMQLSIENGYKRFITLVADARH 501 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ ++ G +WTG +AK GL+D +G ++ A ++ + + Sbjct: 502 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAK-AAELAKAKQWHLEYYVDEPTF 560 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + N+S S + +P Q + A Sbjct: 561 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 589 Score = 99.7 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 40/288 (13%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S E S + I G I D Sbjct: 23 LNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFS 82 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAI 90 +++ I + D + T +++ L + G + I +A+ Sbjct: 83 KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL 142 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + +V G Y K LDKL V Sbjct: 143 KEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKV 202 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ V+ +R IP + Sbjct: 203 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGA 262 Query: 205 ----LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L+ T A + L+D + E+ ++L K Sbjct: 263 QGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKADK 310 >gi|126726020|ref|ZP_01741862.1| peptidase S49 [Rhodobacterales bacterium HTCC2150] gi|126705224|gb|EBA04315.1| peptidase S49 [Rhodobacterales bacterium HTCC2150] Length = 264 Score = 120 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 63/263 (23%), Positives = 111/263 (42%), Gaps = 17/263 (6%) Query: 33 DNSPHVARIAIRGQIE------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 ++P VA I + G I + Q L IER A+ + ++SPGGS I Sbjct: 9 KSTPLVAVIRLSGVISTGRGGLNDQTLAPMIERAFAKGKPKAVALVINSPGGSPVQSSLI 68 Query: 87 FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I+++ K PV V ++AAS GY ++CA++ I TS++GSIGV+ Sbjct: 69 SARIRRLSEEKEIPVYAFVEDVAASGGYWLACAADQIFVDATSIIGSIGVISASFGFDKV 128 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + GV + + K+ PFS V+ ++ + + + F+ V R D+ Sbjct: 129 MANYGVERRIHTAGKSKSFMDPFSPQKAADVKRIKSLQEPIHQAFINHVQTRRGTRLDEN 188 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 + G IW G +A VG+ D + + L+ + + + P K+ Sbjct: 189 AEMFGGEIWVGQQALDVGIADGIAHVSPKMKELFG-----DKTRFRTYGPKKSALSR--- 240 Query: 265 NLSISSLLEDTIPLMKQTKVQGL 287 +S + E + + ++ G Sbjct: 241 -FGLSLVDETLLGIEERNLRAGF 262 >gi|260890698|ref|ZP_05901961.1| protease IV [Leptotrichia hofstadii F0254] gi|260859576|gb|EEX74076.1| protease IV [Leptotrichia hofstadii F0254] Length = 510 Score = 120 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 61/265 (23%), Positives = 119/265 (44%), Gaps = 20/265 (7%) Query: 35 SPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVSLSSPGGSAYAG 83 + +A I G I +++++E+ + + +++ ++S GGSA A Sbjct: 222 NGTIAVIYAEGSILYDPNGVTEGVITPDNILQKVEKAMQTKNLKGIVLRVNSGGGSALAS 281 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 E I++ + K+ P+ + + AAS GY IS A N + A ++ GSIGV+ P + Sbjct: 282 EIIYQELTKL--NIPIYVSMSDTAASGGYYISMAGNKVFANNATITGSIGVVSMIPKLYN 339 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 DK GV SV F+ ++ ++ + ++ +Y F VS++R I + Sbjct: 340 AQDKYGVHSNSVSKGKYSDINDSFAPLSEESRAKITQSMEETYKEFKSRVSKNRKIDENT 399 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 + G+IW G EAK + L+D + +EV + + + ++ +++ Sbjct: 400 LENYAQGKIWLGDEAKNINLVDGIASLDEVIKIMAKDLGLRKDYAVESIYLEEDFSQKLK 459 Query: 264 K-------NLSISSLLEDTIPLMKQ 281 S+S+ L+ IP +K+ Sbjct: 460 SFTNMVTEKFSLSTQLQKNIPQVKK 484 Score = 63.1 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 93/212 (43%), Gaps = 9/212 (4%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 ++++ ++ I + +I++L + + E + + +++K + +A Sbjct: 2 DILQSLDDIKNNSQVKGVIIALDTIDLPSSKIEELSKKFEELKANNKKVYAFGAYITNAN 61 Query: 112 YLISCASNI--IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE--PSPF 167 Y ++ +N +V + ++ + G + Y K DKLG+S++ V+ K+ Sbjct: 62 YKLAAIANEVVMVPSTSASLDLTGYHYSDIYYKGLFDKLGISMEVVRIGNYKSYGENYTG 121 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDG--RIWTGAEAKKVGLI 224 +E+ P+ + ++++ Y+ F+ +S++R I + + +G T A+ L+ Sbjct: 122 NEMTPELRSELTRILENRYNKFITDISKNRKIDKNTLNSDIINGNDTSLTPFAARDKNLV 181 Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 D + + + L + ++ I D+ + Sbjct: 182 DKLEHFSDFTKRL--NIREDNVADITDYYEKR 211 >gi|198283845|ref|YP_002220166.1| signal peptide peptidase SppA, 67K type [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665192|ref|YP_002426483.1| signal peptide peptidase SppA, 67K type [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248366|gb|ACH83959.1| signal peptide peptidase SppA, 67K type [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517405|gb|ACK77991.1| signal peptide peptidase SppA, 67K type [Acidithiobacillus ferrooxidans ATCC 23270] Length = 605 Score = 120 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 121/247 (48%), Gaps = 11/247 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQ----------IEDSQELIERIERISRDDSATALIVS 72 Y + + S +A + I G + +Q I++++R+ + S A+++ Sbjct: 304 AYLAATKPSTTASAKIAVVPIDGMLVTGDAPLPGVVAAQATIKQLDRVGHEASVKAVVLQ 363 Query: 73 LSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 ++SPGG A +AI AI +++ KPVI + + AS Y +S A++ I A T+L Sbjct: 364 VNSPGGDVNAAQAIRAAILRIRKAHKPVIVSMGTLGASGAYWLSTAADRIYAHPTTLTAD 423 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IGV +P L KLG+ + ++ SPFS + + +Q +VD++Y FV Sbjct: 424 IGVFALFPNYAGLLKKLGIHYSGIATTRNANAMSPFSPLGKNVQKALQAMVDNTYADFVN 483 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 LV+ +R+IP +K + GR W+G +A +GL++ +GG + Q L + Sbjct: 484 LVANARHIPTNKVEHDAQGRAWSGLDAYHLGLVNALGGMPQAIQEAAKLAKLSKGKYQVQ 543 Query: 252 WNPPKNY 258 + PP Sbjct: 544 YLPPPTP 550 Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 93/257 (36%), Gaps = 17/257 (6%) Query: 48 EDSQELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 +++++ I+R S D L ++ GGS + + RA+Q+ + I Sbjct: 86 VSIRQMVQAIDRASTDARIHLLELNLSDFGGGSITQLDTVARALQRFRAHGKPIYAYAPD 145 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + YL++ +N I V G + Y K LDKLG+++ S + K+ P Sbjct: 146 YSQDAYLLAAQANHIYMPRLGTVLITGFSTRGLYFKGLLDKLGITVYSFRQGKYKSAMEP 205 Query: 167 FS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--------GA 216 + ++ A + + +++ V++ R + +D Sbjct: 206 LTLTHMSKSAQVENAAWLKVWWDTYLQDVAKGRGLKATLVSRYADQLPELLENYQGNAAE 265 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE--- 273 A K GLI +G + Q++ + K Y + + S+ + Sbjct: 266 LALKQGLITRIGDEHAFRQAVA--AALKQPPKHIKKIGLHAYLAATKPSTTASAKIAVVP 323 Query: 274 -DTIPLMKQTKVQGLWA 289 D + + + G+ A Sbjct: 324 IDGMLVTGDAPLPGVVA 340 >gi|300782067|ref|YP_003762358.1| serine protease [Amycolatopsis mediterranei U32] gi|299791581|gb|ADJ41956.1| serine protease [Amycolatopsis mediterranei U32] Length = 281 Score = 120 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 64/260 (24%), Positives = 108/260 (41%), Gaps = 21/260 (8%) Query: 35 SPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVSLSSPGGSAYAG 83 VA + + G I S + + R D A+ + ++SPGG+ Sbjct: 21 KDVVAVVKLHGVITPSPSPLARGAINLAAVETALTRAFGHDRLKAVALLVNSPGGAPTQS 80 Query: 84 EAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + I+++ + K PV+ ++AAS GY ++CA++ I A TS+VGSIGV+ Sbjct: 81 GLVAERIRQLADEKGVPVLAFCEDVAASGGYWLACAADEIYAHRTSMVGSIGVISGGFGF 140 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L++ G+ + + K+ PFS P+ V+ ++ + + FV V E R Sbjct: 141 TGLLERFGIERRLHTAGANKSRLDPFSPEKPEDVEWLKKMHTQLHELFVNWVKERRGDRL 200 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 T L G +W GA+A +GLID +G ++ Y PK Sbjct: 201 TDTEDLFTGDVWLGAKALDLGLIDGLGSLRQIITERYPDAEIS-------VAEPKKPLLA 253 Query: 262 DLKNLSISSLLEDTIPLMKQ 281 L L + + + Q Sbjct: 254 RL-GLGAPAAASAVLDAVTQ 272 >gi|119944686|ref|YP_942366.1| peptidase S49 [Psychromonas ingrahamii 37] gi|119863290|gb|ABM02767.1| peptidase S49 [Psychromonas ingrahamii 37] Length = 321 Score = 120 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 68/281 (24%), Positives = 121/281 (43%), Gaps = 23/281 (8%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSS------HVEDNSPHVARIAIRGQIEDSQE-----LI 54 ++ + L+ + L F + + + PH A + I+G I +E ++ Sbjct: 27 RRWGIFFKSLTFLYLFGAIFFFFNTQTNLLSDQQKEPHTAMVQIKGVIAADKEANANTIV 86 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAG 111 + +++ + A+++ ++SPGGS +F IQ+ + K + + E+ AS G Sbjct: 87 TGLRAAFKNEFSQAVMLVINSPGGSPVQAGYVFDEIQRLRLLYPDKKLYAVIAELGASGG 146 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I A + SLVGSIGV ++K+GV + S K PFS Sbjct: 147 YYIAAAADQIYADKASLVGSIGVTASSFGFVDLMNKVGVERRHYTSGKHKTFLDPFSPSK 206 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL---VLSDGRIWTGAEAKKVGLIDVVG 228 Q+V+D ++ F+ +V R + L G IW G +A +GLID +G Sbjct: 207 EAERDFWQEVLDVTHRQFINVVKTGRGDRINSDKNSTDLFSGLIWNGEQALALGLIDGLG 266 Query: 229 GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 V + + I +++ + K L IS Sbjct: 267 SPGFVAREIV------RAENIVNYSVQPSTIEKLTKRLGIS 301 >gi|255541922|ref|XP_002512025.1| Protease, putative [Ricinus communis] gi|223549205|gb|EEF50694.1| Protease, putative [Ricinus communis] Length = 578 Score = 120 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 61/264 (23%), Positives = 112/264 (42%), Gaps = 16/264 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSL 73 W+ + +A I G I ++ IE+I ++ A I+ + Sbjct: 267 WTLGLTGGGDQIAVIRASGSISRVRSPTSLPGSGIVGEQFIEKIRQVRESKRYKAAIIRI 326 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 SPGG A A + ++R I+ + KPVI + ++AAS GY ++ A+ IVA +L GSIG Sbjct: 327 DSPGGDALASDLMWREIRLLAETKPVIASMSDVAASGGYYMAMAAGAIVAENLTLTGSIG 386 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP-FSEVNPKAVQMMQDVVDSSYHWFVRL 192 V+ + +K+G + + + + + P ++ ++Y F Sbjct: 387 VVTGKFNLGKLYEKIGFNKEIISRGKYAELLAAEQRPLRPDEAELFARSAQNAYQQFRDK 446 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--K 250 + SR++P +K ++ GR+WTG +A GL+D +GG +++ Sbjct: 447 AAFSRSMPVNKMEEVAQGRVWTGKDAASRGLVDAIGGLSRAVAIAKQKASIPQEKQVILV 506 Query: 251 DWNPPKNYWFCDLKNLSISSLLED 274 + + P L + S D Sbjct: 507 ELSRPSPSLPEILSGVGSSIAGVD 530 Score = 53.1 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 29/207 (14%), Positives = 74/207 (35%), Gaps = 7/207 (3%) Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + I+ K +I V + Y ++CA + I ++ G+ Q ++ Sbjct: 88 ESNKKIEDFPTGKFIICYV-PVCREKEYYLACACDDIYVPPSAYFSLYGLTVQASFLGGV 146 Query: 145 LDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K+G+ + + K+ + ++ + +M+ ++D+ Y ++ +S + + Sbjct: 147 LEKVGIQPEVQRIGKYKSAGDQLTRKTMSEENCEMLTTLLDNIYGNWLDNISSIKGKERE 206 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--KDWNP--PKNY 258 + + ++ KK G I + +EV L Q + + D+ Sbjct: 207 EIENFINEGVYEVERLKKEGFITNIQYDDEVISMLKEKLGVQKDKSLPMVDYGKYSRVRN 266 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQ 285 W L + + + + Sbjct: 267 WTLGLTGGGDQIAVIRASGSISRVRSP 293 >gi|224135361|ref|XP_002322054.1| predicted protein [Populus trichocarpa] gi|222869050|gb|EEF06181.1| predicted protein [Populus trichocarpa] Length = 691 Score = 120 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 63/264 (23%), Positives = 114/264 (43%), Gaps = 16/264 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSL 73 W+ + +A I G I ++LIE+I + A I+ + Sbjct: 380 WTLGLTGGRDLIAIIRASGSISRVKSPLSLSGSGIIGEQLIEKIRQARESKKYKAAIIRI 439 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 SPGG A A + ++R I+ + KPVI + ++AAS GY ++ A++ IVA +L GSIG Sbjct: 440 DSPGGDALASDLMWREIRLLAESKPVIASMSDVAASGGYYMAMAADTIVAENLTLTGSIG 499 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAE-PSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 V+ + +K+G + + + + + P ++ ++Y F Sbjct: 500 VVTGKFSLGKLYEKIGFNKEIISRGKYAELLAADQRPLRPDEAELFAKSAQNAYEQFRDK 559 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--K 250 + SR++P DK ++ GR+WTG +A GL+D +GG R++ Sbjct: 560 AAFSRSMPVDKMEEVAQGRVWTGQDAASRGLVDAIGGFSRAVAIAKQKANIPQDRQVMLV 619 Query: 251 DWNPPKNYWFCDLKNLSISSLLED 274 + + P L + S + + Sbjct: 620 ELSRPSPTLPEILSGIGSSVVGAE 643 Score = 83.5 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 41/290 (14%), Positives = 97/290 (33%), Gaps = 17/290 (5%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDD 64 LV L ++ V S V + +RGQI D ++ E + + D Sbjct: 122 FLVKLKMLIAFPWERVRKGS--VLTMKLRGQISDQLKSRFSSGLSLPQICENFIKAAYDP 179 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 + + + + E + R I K + Y ++ A + + Sbjct: 180 RISGIYLHIDGLNCGWAKVEELRRHIFNFKKSGKFVVAYLPACREKEYYLASACDDLYLP 239 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVV 182 T+ G Q ++ + +G+ + K+ + ++ + +M+ ++ Sbjct: 240 PTAYFSFYGFTVQAAFLAGVFENVGIQPDVQRIGKYKSAGDQLTRKSMSKENCEMLTAIL 299 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 D+ Y ++ VS ++ + + ++ K+ GLI + +EV L Sbjct: 300 DNIYGNWLDKVSSTKGKKIEDMKNFINEGVYKVERLKEEGLITNMHYDDEVISMLKEKVG 359 Query: 243 DQSIRKI--KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 Q + + D++ L L+ ++V+ ++ Sbjct: 360 VQKDKVLPMVDYSKYSRVRNWTLGLTGGRDLIAIIRASGSISRVKSPLSL 409 >gi|237742266|ref|ZP_04572747.1| protease IV [Fusobacterium sp. 4_1_13] gi|256845537|ref|ZP_05550995.1| signal peptide peptidase SppA, 67K type [Fusobacterium sp. 3_1_36A2] gi|229429914|gb|EEO40126.1| protease IV [Fusobacterium sp. 4_1_13] gi|256719096|gb|EEU32651.1| signal peptide peptidase SppA, 67K type [Fusobacterium sp. 3_1_36A2] Length = 578 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 14/236 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLS 74 + D++ + I + G I +S+ E +E++ +D A+++ ++ Sbjct: 295 EGSMTDSNNIIYVIPLEGDIVESETEVFSGEENINVSETLEKLNIAKENDKIKAVVLRVN 354 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGGSA + I ++++ KPV + +AAS GY IS +N I ++ GSIGV Sbjct: 355 SPGGSALTSDIIAEKVKELAEEKPVYVSMSSVAASGGYYISANANKIFVDRNTITGSIGV 414 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + P + GV+I+ + K + + Y F+ +VS Sbjct: 415 VSILPDFSKLITDNGVNIEKISDGEYSDLY-SVDSFTEKKYNKIYNSNLKVYEDFLNVVS 473 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 + R I +K +++GRIWTG EA K+GL D +GG E +L + Sbjct: 474 KGRKIDKEKLKTIAEGRIWTGDEAIKIGLADEIGGLNETIYALAEDNDMDEYAIVV 529 Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 98/281 (34%), Gaps = 32/281 (11%) Query: 3 FVLKKI-------KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARI----------AIRG 45 FV+K+I + ++ ++ + ++ Sbjct: 13 FVIKEILSFFIKLFLFLFVAGIIISAIIKSFEEKPTVAIKNKAYVLINLADSYNERLLKS 72 Query: 46 QIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPV 99 + + + ++ IE +S DD +I+ ++ S E + + + K + Sbjct: 73 NLFEDDSINFYTLLQSIENVSYDDRVEGIILKINGDSLSYAQSEELAHELSMARAANKKI 132 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF-QYPYVKPFLDKLGVSIKSVKSS 158 I + YL S A+ I + + S +I F + Y+K DK GV + Sbjct: 133 IAYFENVGRKNYYLASYANEIYMPSANSTNVNIYPYFREEFYIKQLADKFGVKFNIIHVG 192 Query: 159 PMKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216 K+ S ++ +A + V+D +Y+ F+ +VS +R I D + A Sbjct: 193 DYKSYMENLASSTMSKEAREDTVRVLDKNYNNFLDVVSLNRKINRDDLDKIIKDGELVAA 252 Query: 217 ---EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + LID + V + G I ++++ Sbjct: 253 SSVDLMNNNLIDKYAYWDNVISMV---GGKDKIITVQEYTK 290 >gi|117618146|ref|YP_857847.1| signal peptide peptidase SppA, 67K type [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559553|gb|ABK36501.1| signal peptide peptidase SppA, 67K type [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 614 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 76/277 (27%), Positives = 126/277 (45%), Gaps = 16/277 (5%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSL 73 + S + + V I G I D L + + RDD AL++ + Sbjct: 311 LAAIPSQYPQSGKDEVGLIVASGAIMDGVQPAGTIGGDSLADLLADARRDDKVKALVLRV 370 Query: 74 SSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 SPGGSA+A E I + + + KPV+ + AAS GY IS ++ I A+ T+L GSI Sbjct: 371 DSPGGSAFAAEQIRAELLALKQAGKPVVISMGSYAASGGYWISADADKIFASPTTLTGSI 430 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GV + + L + GV V ++ + Q +Q V+ +Y FV L Sbjct: 431 GVFGMFATIDKALSQYGVHTDGVGTTDY-VGVGLTRALPEHVGQAIQLNVEDTYQRFVGL 489 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS--IRKIK 250 VS+ R + ++T ++GR+WTG +AK +GL+D G QE ++ L + + I+ Sbjct: 490 VSKGRGLSPEETEKAAEGRVWTGQDAKALGLVDEFGDQEAAIKAAAELANLKEWQVTPIE 549 Query: 251 DWNPPKNYWFCDLKNLSI---SSLLEDTIPLMKQTKV 284 K+ + L + S +S L++ +P + Sbjct: 550 QEESAKDKFLRQLFDSSAQVLASHLQNWLPAGLGKAL 586 Score = 84.7 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 82/207 (39%), Gaps = 11/207 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 +L+ I+ DD AL++ G S + + AI K + + + Sbjct: 93 SDLLWAIKSAKDDDRIKALVIKPQGLQGTSFSKLQEVASAIDAFKESGKPVIAMADFYTQ 152 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 YL++ ++ ++ ++ V G+ Y K L+KL ++ K K+ P+ Sbjct: 153 GQYLLAAHADHVLLNQSGAVVIEGLGVYQTYYKSALEKLNITPHVFKVGTYKSFVEPYTR 212 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAK 219 E++P++ + Q +D + +V V+E R I D +L A Sbjct: 213 DEMSPESKEANQRWLDQLWQSYVADVAEQREIEPDAVAPGKDRFLELLRKAGGNAANYAL 272 Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSI 246 GL+D + ++E+ Q++ + Sbjct: 273 DNGLVDQLATRDEMTQAVIKEVGESDD 299 >gi|319892761|ref|YP_004149636.1| Protease IV [Staphylococcus pseudintermedius HKU10-03] gi|317162457|gb|ADV06000.1| Protease IV [Staphylococcus pseudintermedius HKU10-03] gi|323464206|gb|ADX76359.1| exfoliative toxin [Staphylococcus pseudintermedius ED99] Length = 330 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 68/263 (25%), Positives = 124/263 (47%), Gaps = 17/263 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDS---------------QELIERIERISRDDSATALIVSLS 74 D++ +A I + G+I D+ Q ++++E I DDS +++S++ Sbjct: 48 EEGDSNKKIAEIVVEGEIIDTGASGGLFGGGAGYNHQAALKQLETIKNDDSIKGVLLSVN 107 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIG 133 SPGG Y + ++ I++VK+ I E A++G A + I A SL GSIG Sbjct: 108 SPGGGTYESDEFYQKIKEVKDSGKKIFVQMENLAASGGYYISAPADKIYAGPQSLTGSIG 167 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V+ + LD LG+ ++KS K S ++ + +++Q + S+ FV +V Sbjct: 168 VISESKDYSELLDNLGIKTNTIKSGAHKDILSSSRKMTDEEREILQSINKDSFDQFVNVV 227 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 E R + K L+DGRI++ +AK GLID +G +++ + + +I ++ Sbjct: 228 KEGRQMSESKVRELADGRIYSAQQAKSNGLIDAIGYKDKTLKD-LKKAIKVENPEIITFD 286 Query: 254 PPKNYWFCDLKNLSISSLLEDTI 276 P ++ L S + L + Sbjct: 287 PEESNLTSFLGMKSFINGLRAEL 309 >gi|300728472|ref|ZP_07061832.1| signal peptide peptidase SppA, 67K type [Prevotella bryantii B14] gi|299774273|gb|EFI70905.1| signal peptide peptidase SppA, 67K type [Prevotella bryantii B14] Length = 593 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 64/278 (23%), Positives = 123/278 (44%), Gaps = 20/278 (7%) Query: 32 EDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSLSSPGG 78 ED +A G I D + ++ + +E ++ DD A+++ ++S GG Sbjct: 297 EDKGDKIALYYCEGSIIDKANSLNNNEPQIVASKVCKDLEDMANDDRIKAVVLRINSGGG 356 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 AYA E I+ ++K+ +KPV+ + MAAS Y +S + IVA T+ GSIG+ Sbjct: 357 DAYASEQIWHYVKKLNAQKPVVVSMSGMAASGAYYMSMGARWIVAQPTTETGSIGIFAAI 416 Query: 139 PYVKPFL-DKLGVSIKSVKSSP-----MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 P + KLG+ + ++ M N + +Q VD Y F + Sbjct: 417 PDFSGLMTQKLGIKFDEIGTNKNSTFSMNNPIPMARPYNEDEAKALQRYVDRGYDLFCQR 476 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 V++ R + ++ ++ G ++ G +A K+ L+D +G ++ Q + ++ + D+ Sbjct: 477 VADGRKLSVNQVHEVAQGHVFLGTDAIKLKLVDQLGSMDDAIQKAASFAKLKNYYTV-DY 535 Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + P N+ L S+ L++ + L + Sbjct: 536 SQPTNWIDQLLGITEDSNSLDEQLRLALGEYYTPFMML 573 Score = 96.6 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 92/278 (33%), Gaps = 29/278 (10%) Query: 1 MEFVLKKIKTRYVM------LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI------- 47 ++ VL I ++ L++L + S S+ V + ++G I Sbjct: 5 LKNVLATIIGIFLFGSLIGFFGLISLIGMISSKSAGTTLQDNSVLVLKLQGIINEQASDN 64 Query: 48 ------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95 E++ I++ D + + + I A+Q + Sbjct: 65 FIGQITGHQINQIGMNEMMSAIKKAKNDKHIQGIYLESGFLSADWATVQEIRGALQDFRK 124 Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 I E Y IS A+N + ++ G+ Q Y K K GV + Sbjct: 125 SGKWIIAYGERFNQPTYYISTAANKVYLNPEGMIDWHGIAAQPEYYKDLFAKFGVRFQIF 184 Query: 156 KSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 K K+ F+E ++ + M +++ + VS+SR+I + +D + Sbjct: 185 KVGKYKSYTETFTEDKMSDANREQMSRIINGLWSEVCTQVSQSRHISTSQLNQYADEIVS 244 Query: 214 T--GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 G K +D + +E+ + + I Sbjct: 245 LDGGKSLLKKNFVDGLLYADEIKSVVKKRLGLEDDDMI 282 >gi|323699137|ref|ZP_08111049.1| signal peptide peptidase SppA, 36K type [Desulfovibrio sp. ND132] gi|323459069|gb|EGB14934.1| signal peptide peptidase SppA, 36K type [Desulfovibrio desulfuricans ND132] Length = 335 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 69/280 (24%), Positives = 124/280 (44%), Gaps = 19/280 (6%) Query: 31 VEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSPG 77 + +A I +RG + QEL+ ++ DD A++V++ SPG Sbjct: 50 DGEGPGKIALIHLRGFLSTEPAQGMLRSQPSAVQELVNNLKLAEADDQVGAVVVAIDSPG 109 Query: 78 GSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 G+ A + ++ + K R KPV+ + ++AAS GY + ++ IVA T++ GS+GV+ Sbjct: 110 GTTTASDVLYHELTAFKQRTGKPVVAAMFDVAASGGYYAALPADWIVAHPTTITGSVGVV 169 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 F P + +DK+GV ++ KS K SPF P+ + Q ++D F LV E Sbjct: 170 FMRPKLNGLMDKVGVDVEVSKSGRDKDMGSPFRPTTPEEEALFQGIIDDMAARFYALVQE 229 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 R++ + R++T ++A +GLID +G ++ + L K+ + Sbjct: 230 HRHLTPAHLETVKTARVFTASQALSIGLIDQIGYVQDAFAKARDLAGLDPECKVVTYRRD 289 Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKV----QGLWAVW 291 L + + ++ + V G VW Sbjct: 290 MYPDDNPYNTLDSAEPYKPSLLGVDAGFVLPPRAGFCYVW 329 >gi|265983331|ref|ZP_06096066.1| signal peptide peptidase SppA [Brucella sp. 83/13] gi|264661923|gb|EEZ32184.1| signal peptide peptidase SppA [Brucella sp. 83/13] Length = 239 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 87/198 (43%), Positives = 139/198 (70%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 F + N PH+A++ I G I +++EL++R++RI+ +D+ +I+ L SPGG+ Sbjct: 40 FAFYSLRGAKFNQPHIAKVRIEGTIFENEELLKRLDRIAGNDAVKGVILLLDSPGGTTVG 99 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 GEAI+ A++K+ +KPV+T+V +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + Sbjct: 100 GEAIYDAVRKIAKKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLS 159 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LD LGV ++++KSSP+KAEP+ FS + +A M++ ++ SY WFV +V E R ++ Sbjct: 160 KLLDTLGVKVETIKSSPLKAEPNYFSPASEEAKNMIRGMIMDSYDWFVGIVQERRAFTHE 219 Query: 203 KTLVLSDGRIWTGAEAKK 220 + L L++G ++TG +A Sbjct: 220 QALALANGAVFTGRQALD 237 >gi|32490457|dbj|BAC79152.1| exfoliative toxin [Staphylococcus intermedius] gi|195972574|emb|CAR57917.1| exfoliative toxin [Staphylococcus pseudintermedius] Length = 330 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 68/263 (25%), Positives = 124/263 (47%), Gaps = 17/263 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDS---------------QELIERIERISRDDSATALIVSLS 74 D++ +A I + G+I D+ Q ++++E I DDS +++S++ Sbjct: 48 EEGDSNKKIAEIVVEGEIIDTGASGGLFGGGAGYNHQAALKQLETIKNDDSIKGVLLSVN 107 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIG 133 SPGG Y + ++ I++VK+ I E A++G A + I A SL GSIG Sbjct: 108 SPGGGTYESDEFYQKIKEVKDSGKKIFVQMENLAASGGYYISAPADKIYAGPQSLTGSIG 167 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V+ + LD LG+ ++KS K S ++ + +++Q + S+ FV +V Sbjct: 168 VISESKDYSELLDNLGIRTNTIKSGAHKDILSSSRKMTDEEREILQSINKDSFDQFVNVV 227 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 E R + K L+DGRI++ +AK GLID +G +++ + + +I ++ Sbjct: 228 KEGRQMSESKVRELADGRIYSAQQAKSNGLIDAIGYKDKTLKD-LKKAIKVENPEIITFD 286 Query: 254 PPKNYWFCDLKNLSISSLLEDTI 276 P ++ L S + L + Sbjct: 287 PEESNLTSFLGMKSFINGLRAEL 309 >gi|294785166|ref|ZP_06750454.1| protease IV [Fusobacterium sp. 3_1_27] gi|294486880|gb|EFG34242.1| protease IV [Fusobacterium sp. 3_1_27] Length = 578 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 14/236 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLS 74 + D++ + I + G I +S+ E +E++ +D A+++ ++ Sbjct: 295 EGSMTDSNNIIYVIPLEGDIVESEIEVFSGEENINVSETLEKLNIAKENDKIKAVVLRVN 354 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGGSA + I ++++ KPV + +AAS GY IS +N I ++ GSIGV Sbjct: 355 SPGGSALTSDIIAEKVKELAEEKPVYVSMSSVAASGGYYISANANKIFVDRNTITGSIGV 414 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + P + GV+I+ + K + + Y F+ +VS Sbjct: 415 VSILPDFSKLITDNGVNIEKISDGEYSDLY-SVDSFTEKKYNKIYNSNLKVYEDFLNVVS 473 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 + R I +K +++GRIWTG EA K+GL D +GG E +L + Sbjct: 474 KGRKIDKEKLKTIAEGRIWTGDEAIKIGLADEIGGLNETIYALAEDNDMDEYAIVV 529 Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 98/281 (34%), Gaps = 32/281 (11%) Query: 3 FVLKKI-------KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARI----------AIRG 45 FV+K+I + ++ ++ + ++ Sbjct: 13 FVIKEILSFFIKLFLFLFVAGIIISAIIKSFEEKPTVAIKNKAYVLINLADSYNERLLKS 72 Query: 46 QIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPV 99 + + + ++ IE +S DD +I+ ++ S E + + + K + Sbjct: 73 NLFEDDSINFYTLLQSIENVSYDDRVEGIILKINGDSLSYAQSEELAHELSMARAANKKI 132 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF-QYPYVKPFLDKLGVSIKSVKSS 158 I + YL S A+ I + + S +I F + Y+K DK GV + Sbjct: 133 IAYFENVGRKNYYLASYANEIYMPSANSTNVNIYPYFREEFYIKQLADKFGVKFNIIHVG 192 Query: 159 PMKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216 K+ S ++ +A + V+D +Y+ F+ +VS +R I D + A Sbjct: 193 DYKSYMENLASSTMSKEAREDTVRVLDKNYNNFLDVVSLNRKINRDDLDKIIKDGELVAA 252 Query: 217 ---EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + LID + V + G I ++++ Sbjct: 253 SSVDLMNNNLIDKYAYWDNVISMV---GGKDKIITVQEYTK 290 >gi|116515107|ref|YP_802736.1| hypothetical protein BCc_171 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256961|gb|ABJ90643.1| protease IV, a signal peptide peptidase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 621 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 122/234 (52%), Gaps = 11/234 (4%) Query: 34 NSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 NS + I G IE++ + L+ I+ D S A+I+ ++SPGG+ E Sbjct: 327 NSNKIKVIISNGIIENNCKRSANLNIENLLNEIDEAKNDSSVKAVILRINSPGGTVKYSE 386 Query: 85 AIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I + + ++ KP+I + ++ AS GY IS A + I+A +T+L GSIG+ P ++ Sbjct: 387 IIRKKLLELHKCNKPLIISMGDVCASGGYWISTAGDYIIAHDTTLTGSIGIFAVIPTIEK 446 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L +G+ +K+ + S F E++ ++ + + D + Y F+ +V++SR + Y K Sbjct: 447 ILSTIGIKQYQIKT-KYYEDFSIFHELSEQSKKSIGDNIIREYKKFITIVAQSRKLSYKK 505 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 T +S GR+WTG +A+K+GL+D +G + + L ++ I K+ Sbjct: 506 THSISQGRVWTGYQAQKIGLVDEIGDLDHAIKKAAQLANIKNYCVIWSKLEKKS 559 Score = 58.9 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 92/278 (33%), Gaps = 46/278 (16%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSH-----VEDNSPHVARIAIRGQI----------- 47 ++KKI +L +++ V+ ++N + I + + Sbjct: 21 LIKKIFLNIFILLFLSIFVLLIYEIKKKNIFFSKNNKSGILVIDLNQTLKEEPIRNISLY 80 Query: 48 ---------------EDSQELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQ 91 E+ ++IE+ D + ++ S + E + + Sbjct: 81 KHHNYFLNFFNWSNNSSVYEITKKIEQAKEDPKIKGIQLNFSDSFTSNQVILEYFGKKLY 140 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + K I + + + +GY ++ SN I V G+ ++K +D L + Sbjct: 141 EFKQSNKPIISIGKNYSQSGYYLASFSNKIFLLPDGSVHINGIANTKIFLKKIIDTLKIH 200 Query: 152 IKSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + + K + + ++ Q ++ + +++ ++ +RN + + Sbjct: 201 LHVFRIGKYKNAVESVLRNSPSKINKKIDQLIIRFKWKKYLQKIASNRNTVLTEIC--PN 258 Query: 210 GRIWT----------GAEAKKVGLIDVVGGQEEVWQSL 237 I+T A L+D + + + + L Sbjct: 259 PNIFTKFFKKKNNNYTKYALYHNLVDKILKKNSIKKYL 296 >gi|332157800|ref|YP_004423079.1| protease IV [Pyrococcus sp. NA2] gi|331033263|gb|AEC51075.1| protease IV [Pyrococcus sp. NA2] Length = 329 Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 115/240 (47%), Gaps = 3/240 (1%) Query: 21 TVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGG 78 + S + + +A + I G I++ + ++I+RI I + + +++ + SPGG Sbjct: 68 FLRGLIASMNESKGNISIAILPIFGPIDEELALKIIKRIREIRSNRTIGGVLLWIESPGG 127 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 I+ ++K+ + KP++ A S Y I+CA+ I+A + VGSIGV++ + Sbjct: 128 YVGPVREIYEELKKLSHLKPIVAYTGGYAYSGAYYIACAAQKIIADPLADVGSIGVIYVH 187 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + + + G+ ++ K+ P K + + + P+ +++++ + + + F+ +VSE RN Sbjct: 188 FNAEKYYENNGIEVEVFKTGPYKDMGADWRGLTPEEREIIKNQIQTYFDDFISVVSEGRN 247 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + ++ + GR W + L+D +G + + L + + + + + Sbjct: 248 MTIEEVKKFATGRTWFAKD-VNGTLVDELGDMDLAIRELLKIMGVKKANILVYDIEREKF 306 >gi|260427805|ref|ZP_05781784.1| peptidase, family S49 [Citreicella sp. SE45] gi|260422297|gb|EEX15548.1| peptidase, family S49 [Citreicella sp. SE45] Length = 326 Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 108/260 (41%), Gaps = 19/260 (7%) Query: 33 DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 P VA + ++G I Q L +E+ R A+ + ++SPGGS Sbjct: 70 KTKPTVAVVRMQGAIGTGGRMALSDQSLRPLLEKAFRKGKPAAVALEINSPGGSPVQSSL 129 Query: 86 IFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I I+++ + PV ++AAS GY I+ A++ I A +S++GSIGV+ Sbjct: 130 IGARIRRLSEETKVPVFAFTEDVAASGGYWIASAADEIWADPSSILGSIGVISAGFGAHV 189 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + G+ + + K+ PF + + V + ++ + F++ + R Sbjct: 190 FLQRQGIERRVHTAGKSKSMLDPFRPESEEDVARLDRLLGQLHETFIQQIRSRRGDKLAD 249 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L G +W G A VGL D VG V + + + + + + + Sbjct: 250 DPDLFTGEVWIGKAACDVGLADGVGHLVPVMKQRFG-----DKVRFRRYEQKRRLFPRL- 303 Query: 264 KNLSISSLLEDTIPLMKQTK 283 ++L +D + +++ Sbjct: 304 ----GATLAQDALGAVEERA 319 >gi|148244822|ref|YP_001219516.1| peptidase S49 [Candidatus Vesicomyosocius okutanii HA] gi|146326649|dbj|BAF61792.1| peptidase S49 [Candidatus Vesicomyosocius okutanii HA] Length = 319 Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 72/299 (24%), Positives = 125/299 (41%), Gaps = 22/299 (7%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHV-------EDNSPHVARIAIRGQI-----EDSQELI 54 + + + +L + +Y+ S + SP VA + + G I D+ E I Sbjct: 25 RWRIIFSILFVGYFIFIYYIGISENGVLNTALKKESPFVAEVVLSGTIQSSGSIDADETI 84 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGY 112 E + + ++A A+I+ ++SPGGS I++AI ++K K V ++ AS Y Sbjct: 85 ELLYSAFKLENAKAIILRINSPGGSPVQSSRIYKAIIRLKKQFDKKFYVVVEDVCASGCY 144 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 I+ A++ I A E+S++GSIGV+ + KLG+ + + K FS N Sbjct: 145 YIASAADEIYADESSIIGSIGVIMSSFGAVDAIKKLGIKRRLYTAGKYKGLLDSFSPENE 204 Query: 173 KAV-QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 K + + V+D + F+ V R K L G IW G +A K+GLID + Sbjct: 205 KILAHIQIHVLDKLHQNFINAVKAGRGNRLSKHKDLFTGLIWLGQDANKLGLIDGIADTN 264 Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 V + + + + + L SI+ + + + G V Sbjct: 265 YVAKHIIGI-------DSRVLFEKEKTLLEQLTEASINGIALAISDKLISKNLIGFLQV 316 >gi|110681212|ref|YP_684219.1| S49 family peptidase putative [Roseobacter denitrificans OCh 114] gi|109457328|gb|ABG33533.1| peptidase, family S49, putative [Roseobacter denitrificans OCh 114] Length = 265 Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 64/260 (24%), Positives = 112/260 (43%), Gaps = 19/260 (7%) Query: 33 DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 P VA I + G I + + L IE+ A+ + ++SPGGS Sbjct: 9 KADPTVAVIRLSGVISAAGRGTLNDESLAPVIEKAFARGKPAAVALEVNSPGGSPVQSSL 68 Query: 86 IFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I I+++ K PVI V ++AAS GY ++ A++ I E+SLVGSIGV+ Sbjct: 69 IGARIRRLAEEKDIPVIAFVEDVAASGGYWLAAAADEIYGDESSLVGSIGVISASFGAHD 128 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L + G+ + + K+ PF NP+ V ++ +++ + F V+ R Sbjct: 129 LLARQGIERRVYTAGKSKSMLDPFRPENPEDVARLKGLLEDIHGNFKDHVAARRKGKLTD 188 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L G +W A ++GLID +G + + + K +++ K Sbjct: 189 DRDLFTGEVWLARRAAELGLIDGIGHLKPMMTERFG-----EKVKFRNYGMRKPLLTRF- 242 Query: 264 KNLSISSLLEDTIPLMKQTK 283 S +L+DT+ +++ Sbjct: 243 ----GSRILDDTLHSIEERS 258 >gi|254284422|ref|ZP_04959390.1| signal peptide peptidase SppA, 67K type [gamma proteobacterium NOR51-B] gi|219680625|gb|EED36974.1| signal peptide peptidase SppA, 67K type [gamma proteobacterium NOR51-B] Length = 590 Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 57/251 (22%), Positives = 121/251 (48%), Gaps = 11/251 (4%) Query: 38 VARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 VA + I G++ S+ ++ER+ R + A+++ +++PGGS +A + I Sbjct: 304 VAVVPIEGELVPGESIDGFAGSETVLERLRRTAELPGLEAVVLRINTPGGSVFAADVIRE 363 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCA-SNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 +Q+++ + + A++G A ++ IVA T+L GSIGV +P + D Sbjct: 364 GVQELRAQGLTVVVSMAALATSGGYYIAAETDHIVAQPTTLTGSIGVFAAFPTFERLFDY 423 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 GVS+ V ++ M ++ + +++ V+ +Y F+ +V+E R + ++ + Sbjct: 424 AGVSVDGVGTTAMADAFRADRPLSEGSASVIRQVIAGTYVDFLHIVAEGRGMNVEQVAPI 483 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 ++G +WTG++A ++GL+D +GG EE L +++ + L+++ Sbjct: 484 AEGIVWTGSDALEIGLVDSMGGLEEAINIAAGLAGL-DRWEVQRMGTAMSPEQRLLQHIG 542 Query: 268 ISSLLEDTIPL 278 S + Sbjct: 543 RSIGMAGVFSA 553 Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 35/269 (13%), Positives = 93/269 (34%), Gaps = 32/269 (11%) Query: 11 RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------------- 50 + +L+ + + F + + V + G + + Sbjct: 4 LVTLGALIYMLSIVFDQARPMPIEDNSVLLLQPVGVVVEDLDPLEPLQALLQQDVASEVL 63 Query: 51 -QELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 +L++ I+ S D +A+++ L+ G + AI + K R + V + Sbjct: 64 LSDLVDAIDAASEDPRISAMVIDLADTVGPGLSQTLDLITAIDRFKARGKPVIAVGDFYT 123 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167 YL++ ++ ++ + G Y+ LDK+ +++ ++ K+ PF Sbjct: 124 QGHYLVASQADEVLLHPKGSLSLTGFGAYNYYLVRLLDKIKLTVHVFRAGDNKSAVEPFL 183 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-----WTGAEAK-- 219 +++ +++ + S + + ++ R +P + + G A+ Sbjct: 184 RDDMSSTERRVVARWLGSLWQDYTAVIERGRGLPSGSIDRMIADFPALLGQYGGDVAQMS 243 Query: 220 -KVGLIDVVGGQEEVWQSLYALGVDQSIR 247 +GLID + + + + Sbjct: 244 LALGLIDGLANDAAMEARIAEVAGAGRDE 272 >gi|237744193|ref|ZP_04574674.1| protease IV [Fusobacterium sp. 7_1] gi|229431422|gb|EEO41634.1| protease IV [Fusobacterium sp. 7_1] Length = 578 Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 66/271 (24%), Positives = 119/271 (43%), Gaps = 23/271 (8%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLS 74 ++E ++ V I + G I +S+ E +E++ ++ A+++ ++ Sbjct: 295 EENLESSNNVVYVIPLEGDIVESETEVFAGEENINVAETLEKLNIAKENNKIKAVVLRIN 354 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGGSA + I I+++ + KPV + +AAS GY IS ++ I ++ GSIGV Sbjct: 355 SPGGSALTSDIIAEKIKELASEKPVYVSMSSVAASGGYYISANADKIFVDRNTITGSIGV 414 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + P + GV+I+ + S + K + + Y F+ +VS Sbjct: 415 VSILPDFSKLITDNGVNIEKISEGEYSDLYSSDT-FTEKKYNKIYNSNLKVYDDFLNVVS 473 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK---- 250 ++R I +K +++GRIWTG EA K+GL D +GG E + + Sbjct: 474 KARKIDKEKLKTIAEGRIWTGEEAVKIGLADEIGGLNEAIYGIAEDNDMDEYSIVVAKDK 533 Query: 251 -----DWNPPKNYWFCDLKNLSISSLLEDTI 276 + Y D K+L + +D + Sbjct: 534 FELGNIYRKYSRYIKMDTKDLIKEKIFKDYL 564 Score = 66.2 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 10/210 (4%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASA 110 L++ +E S DD +I+ ++ S E + + + K +I + Sbjct: 84 TLLQSVENASYDDRVEGIILKMNGDSLSYAQSEELAHELSMARAADKKIIAYFENVGRKN 143 Query: 111 GYLISCASNIIVAAETSLVGSIGVLF-QYPYVKPFLDKLGVSIKSVKSSPMKAEPS--PF 167 YL S A+ I + + S +I F + Y+K DK GV + K+ Sbjct: 144 YYLASYANEIYMPSANSTNVNIYPYFREEFYIKKLADKFGVKFNIIHVGDYKSYMENLAS 203 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA---EAKKVGLI 224 S ++ +A + ++D +Y+ F+ +VS +R + D + A + LI Sbjct: 204 STMSKEAREDTVRILDKNYNNFLDIVSLNRKLNRDDLDKIIKDGDLVAASSVDLMNNKLI 263 Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 D + + + G I I+D+ Sbjct: 264 DKYAYWDNIISMV---GGKDKIITIQDYTK 290 >gi|154623593|dbj|BAF74800.1| protease IV homologue [Enterococcus faecium] Length = 344 Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 64/253 (25%), Positives = 117/253 (46%), Gaps = 14/253 (5%) Query: 31 VEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSPG 77 ++ + ++++ G I D+ Q + ++++I D + +++ ++SPG Sbjct: 58 EGASNKKIVKLSVNGVIADTGESNLFSREQYTHQNFLTQLKKIQEDTALNGVLLEVNSPG 117 Query: 78 GSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 G Y I + + +K P+ T + AAS GY IS + I A E + GSIGV+ Sbjct: 118 GGIYESAEIAKEMANIKKLDIPIYTALKNTAASGGYYISAGPDKISATEETTTGSIGVII 177 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 L+ LGV+ + S +K P + + + +++Q+ V S+Y FV +V++ Sbjct: 178 SGLNYSGLLENLGVTDATYTSRALKDMMPPQHKPSEEENKVIQEFVMSAYDRFVNVVAKG 237 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 RN+ + L+DGRI+ G +A + GL+D +G E+ SL I+ N Sbjct: 238 RNMDTNAVKELADGRIYDGNQAVENGLVDQIGYSEDALDSLKKEKKLTDATVIEYKNDTT 297 Query: 257 NYWFCDLKNLSIS 269 + L N Sbjct: 298 GFASSWLGNKIAE 310 >gi|163791443|ref|ZP_02185852.1| hypothetical protein CAT7_03184 [Carnobacterium sp. AT7] gi|159873307|gb|EDP67402.1| hypothetical protein CAT7_03184 [Carnobacterium sp. AT7] Length = 345 Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 121/240 (50%), Gaps = 15/240 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSP 76 D+S + +++ G I Q ++++E+I DD+ +I+S++SP Sbjct: 58 DAGDSSKRIVVLSVDGTILAGQTASFTGDSGYDHNGFLQQLEQILVDDTIKGIILSVNSP 117 Query: 77 GGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG Y I + +++ + KP+ + MAAS GY IS + I AAE +L GSIGV Sbjct: 118 GGGTYESAQIKDKLVEIQEKTKKPIYVSMGSMAASGGYYISAPAEKIFAAEETLTGSIGV 177 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + + +K+G+ ++KS K S E+ + ++Q +V++S+ FV ++ Sbjct: 178 IMSGTNLTELFEKIGIDDTTIKSGKFKDIGSTTREMTEEDAAILQTMVNTSFDRFVDVIV 237 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + R + D ++DGRI+ GA+A ++GL+D +G QE+ +++ + P Sbjct: 238 KGRGMDEDVVRTIADGRIYDGAQAVELGLVDEIGYQEDALETIQKDYKLEDAEIFSYQTP 297 >gi|262039165|ref|ZP_06012485.1| signal peptide peptidase SppA, 67K type [Leptotrichia goodfellowii F0264] gi|261746781|gb|EEY34300.1| signal peptide peptidase SppA, 67K type [Leptotrichia goodfellowii F0264] Length = 595 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 63/265 (23%), Positives = 126/265 (47%), Gaps = 15/265 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQE----------LIERIERISRDDSATALIVSLSSPGG 78 + +A I G I ++E + E+++ +S+ +++ ++SPGG Sbjct: 303 EEQNQDKGTIAVIFAEGPIVYNEEAQGIYISPDNMAEKLKELSKIKDLKGVVLRVNSPGG 362 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 SA A E I++ + K+ PV + E+AAS GY IS + + A + ++ GSIGV+ + Sbjct: 363 SALASEMIYQMLSKI--NVPVYVSMSEVAASGGYYISMSGKKVFANDATITGSIGVVSMF 420 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P +K GV+ S+ PF ++ ++ + + ++++Y F VS++RN Sbjct: 421 PKFYNAQNKYGVTSNSISKGKYTDTFDPFVPLSAESRNKIIESMNATYDEFKSRVSKNRN 480 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + + G+IW G+EAKK+ L+D + +E ++L ++++ K++ Sbjct: 481 MAPQVLENYAQGKIWLGSEAKKINLVDGIATLDETVKTLARDLNLGDNYRVENIYAKKDF 540 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTK 283 +SS + + L Q + Sbjct: 541 KETLKL---LSSYIFEKFQLTSQLE 562 Score = 70.8 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 38/244 (15%), Positives = 99/244 (40%), Gaps = 8/244 (3%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 +++ +E I +D+ +I++L S+ E I + +Q++KN+ + + Sbjct: 89 DVLNSLEDIKNNDNIKGVIINLDQTNISSVKSEEISKKLQEIKNKNKKVYAFGAYMDNNN 148 Query: 112 YLISCASNIIVA--AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE--PSPF 167 Y ++ +N I+ + + V G + Y K L +GV ++ V+ K+ Sbjct: 149 YPLASVANEIIMVPSASGSVSLAGYHYSDLYYKKLLSNVGVDMEVVRIGDFKSYGENYTS 208 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS---DGRIWTGAEAKKVGLI 224 ++ + +++S ++ F+ VS++R + +K D T + A+ + Sbjct: 209 DTMSSGLRNELTRILESRFNSFLDKVSKARRLDKNKLNADILNGDNTNLTPSAARDKNFV 268 Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 D + ++ L + D + + ++ +++ P++ + Sbjct: 269 DTLEYFNDLMTKL-QINEDNIVDIYDYYADNGKRIEEQNQDKGTIAVIFAEGPIVYNEEA 327 Query: 285 QGLW 288 QG++ Sbjct: 328 QGIY 331 >gi|124003560|ref|ZP_01688409.1| signal peptide peptidase SppA, 67K type [Microscilla marina ATCC 23134] gi|123991129|gb|EAY30581.1| signal peptide peptidase SppA, 67K type [Microscilla marina ATCC 23134] Length = 573 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 61/249 (24%), Positives = 113/249 (45%), Gaps = 10/249 (4%) Query: 27 WSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPG 77 W + ++ +A I G+I + ++++ + R + S A+++ ++SPG Sbjct: 278 WEKQQKKSNHRIAVIVADGEIRSGNGRDGIVGAAKIVKALRRARKSKSVKAIVLRVNSPG 337 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 GSA A + ++R I + KPVI + ++AAS GY I+ A + IVA ++ GSIG+ Sbjct: 338 GSALASDIMWREIHLTRKVKPVIASMSDVAASGGYYIAMACDTIVAQPNTITGSIGIFSI 397 Query: 138 YPYVKPFLDK-LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 Y + F LG++ V + A P Q++Q ++ Y F ++ Sbjct: 398 YFNLAAFQKNKLGITNDYVNTGKFSALGDPSYPFTEADRQILQRSIERGYESFTSKAAKD 457 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R + + ++ GR+W G EAK+ GL+DV+G + + P + Sbjct: 458 RGMSLAELKSVASGRVWAGNEAKQNGLVDVLGSFNDALAIAAKKAKLSKKDYRLWFLPVE 517 Query: 257 NYWFCDLKN 265 +K+ Sbjct: 518 KPLIDKIKD 526 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 43/260 (16%), Positives = 97/260 (37%), Gaps = 25/260 (9%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ----------------------EL 53 ++ S SS + + V + + G I + + Sbjct: 5 LVIFFIFTLVSSSSTITTDQKSVLLLKLNGNITELDIDNPVPSLDNPLNPVVDGTGLMGI 64 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 + IE+ D + +++ L S G + + + A+ K K + E + Y Sbjct: 65 LHNIEKAKNDPNIAGIVLHLQSIGAGFASLKELREALNDFKQSKKFVWAYGEYLSEGAYY 124 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVN 171 ++ +N I T + G+ Q + K DKL + + + K+ P+ +++ Sbjct: 125 LTSVANKIYLNPTGSLEFNGLSAQRTFYKGAFDKLDIKPEIFRVGTYKSAVEPYMTDKMS 184 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + + ++S Y +++ ++ SR + + G + + A+A K LI +G Sbjct: 185 EASRRQTESYLNSIYDLYLKDIATSRKVSLARLTQASDSGLVQSPADALKYQLITKIGYY 244 Query: 231 EEVWQSLYALGVDQSIRKIK 250 +E+ + +KIK Sbjct: 245 DELEAEVKQRLDLNENQKIK 264 >gi|114320584|ref|YP_742267.1| peptidase S49 [Alkalilimnicola ehrlichii MLHE-1] gi|114226978|gb|ABI56777.1| peptidase S49 [Alkalilimnicola ehrlichii MLHE-1] Length = 311 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 63/287 (21%), Positives = 120/287 (41%), Gaps = 15/287 (5%) Query: 8 IKTRYVMLS-LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ----ELIER-IERIS 61 I + L+ LV L + + S PH+A++ + G I + EL+ + ++ Sbjct: 31 IFFKLAFLAYLVALLIPFASGFLFERPTGPHLAKVNVTGLISADELASAELVNQGLQAAF 90 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP---VITEVHEMAASAGYLISCAS 118 A +++ ++SPGGS I+ I +++ + V + ++ AS Y I+ A+ Sbjct: 91 NAPRAEGVVLYINSPGGSPVQSNRIYSEINRLREQHQGMAVYAVIDDVGASGAYYIASAA 150 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I S+VGSIGV+ ++KLGV + + KA PF+ M Sbjct: 151 DEIFVNPASVVGSIGVISGGFGFTEAMEKLGVERRIYTAGENKAFLDPFAPEEEAHQAHM 210 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 + +++ + F+ V R L G IWTG + ++GL D G V + + Sbjct: 211 ERLLEEVHSQFIADVRAGRGERLADDDRLFSGLIWTGESSVELGLADGFGDIAHVAREVA 270 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 + ++ D++ L +S T L + +++ Sbjct: 271 G------VDQVLDYSRHPGLLRFITDRLGMSIGKAITRALTEGHELR 311 >gi|259418110|ref|ZP_05742029.1| peptidase S49 [Silicibacter sp. TrichCH4B] gi|259347016|gb|EEW58830.1| peptidase S49 [Silicibacter sp. TrichCH4B] Length = 298 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 64/274 (23%), Positives = 116/274 (42%), Gaps = 11/274 (4%) Query: 11 RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRD 63 RY++ + S + P VA + + G I + L +ER + Sbjct: 20 RYLVSGGWAFYIGAMSVRLPFKKRPPLVAVVRLSGAIGMAGRGSLNDTTLAPVLERAFKK 79 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNII 121 A+ + ++SPGGS I I+++ PV V ++AAS GY ++ A++ I Sbjct: 80 GKPQAVALEINSPGGSPVQSALIGARIRRLAEEHDVPVFAFVEDVAASGGYWLAAAADEI 139 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 A +S+VGSIGV+ FL + G+ + + K+ PF N V ++ + Sbjct: 140 FADASSVVGSIGVISSGFGAHIFLARQGLERRVHTAGESKSMLDPFRPENEGDVARLKVL 199 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 ++ + F+ V+E R L G +W A +GLID +G + V Q + Sbjct: 200 LNDIHANFIEHVTERRGTKLTSDEKLFTGEVWLARRAIGLGLIDGIGHLKPVLQERFGKK 259 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 V +K P + + + +++++ E Sbjct: 260 VRLRRYGVK--KPFLSRFGLSMAEDALAAVEERA 291 >gi|118487709|gb|ABK95679.1| unknown [Populus trichocarpa] Length = 625 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 63/264 (23%), Positives = 114/264 (43%), Gaps = 16/264 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSL 73 W+ + +A I G I ++LIE+I + A I+ + Sbjct: 314 WTLGLTGGRDLIAIIRASGSISRVKSPLSLSGSGIIGEQLIEKIRQARESKKYKAAIIRI 373 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 SPGG A A + ++R I+ + KPVI + ++AAS GY ++ A++ IVA +L GSIG Sbjct: 374 DSPGGDALASDLMWREIRLLAESKPVIASMSDVAASGGYYMAMAADTIVAENLTLTGSIG 433 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKA-EPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 V+ + +K+G + + + + + P ++ ++Y F Sbjct: 434 VVTGKFSLGKLYEKIGFNKEIISRGKYAELLAADQRPLRPDEAELFAKSAQNAYEQFRDK 493 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--K 250 + SR++P DK ++ GR+WTG +A GL+D +GG R++ Sbjct: 494 AAFSRSMPVDKMEEVAQGRVWTGQDAASRGLVDAIGGFSRAVAIAKQKANIPQDRQVMLV 553 Query: 251 DWNPPKNYWFCDLKNLSISSLLED 274 + + P L + S + + Sbjct: 554 ELSRPSPTLPEILSGIGSSVVGAE 577 Score = 42.3 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 59/168 (35%), Gaps = 4/168 (2%) Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDS 184 + G Q ++ + +G+ + K+ + ++ + +M+ ++D+ Sbjct: 176 AYFSFYGFTVQAAFLAGVFENVGIQPDVQRIGKYKSAGDQLTRKSMSKENCEMLTAILDN 235 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 Y ++ VS ++ + + ++ K+ GLI + +EV L Q Sbjct: 236 IYGNWLDKVSSTKGKKIEDMKNFINEGVYKVERLKEEGLITNMHYDDEVISMLKEKVGVQ 295 Query: 245 SIRKI--KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + + D++ L L+ ++V+ ++ Sbjct: 296 KDKVLPMVDYSKYSRVRNWTLGLTGGRDLIAIIRASGSISRVKSPLSL 343 >gi|312283239|dbj|BAJ34485.1| unnamed protein product [Thellungiella halophila] Length = 682 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 114/264 (43%), Gaps = 16/264 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSL 73 W+ + +A I G I +++LIE+I + A I+ + Sbjct: 370 WTLGLSGGRDQIAIIRAGGSISRVKGPLSTPGSAIIAEQLIEKIRSVRESKKYKAAIIRI 429 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 SPGG A A + ++R I+ + KPVI + ++AAS GY ++ A+N IVA +L GSIG Sbjct: 430 DSPGGDALASDLMWREIKLLAESKPVIASMSDVAASGGYYMAMAANTIVAENLTLTGSIG 489 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-SEVNPKAVQMMQDVVDSSYHWFVRL 192 V+ + +K+G + +++ P+ ++ +Y F Sbjct: 490 VVTARFTLAKLYEKIGFNKETISRGKYAELLGAEERPFKPEEAELFGKSAQHAYQLFRDK 549 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--K 250 + SR++P DK ++ GR+WTG +A GL+D +GG +K+ Sbjct: 550 AALSRSMPVDKMEEVAQGRVWTGKDAHSRGLVDALGGLSRAIAIAKKKANIPLHKKVTLV 609 Query: 251 DWNPPKNYWFCDLKNLSISSLLED 274 + + P L + S + D Sbjct: 610 EISRPSTSLPDILSGIGSSVIGVD 633 Score = 89.7 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 93/268 (34%), Gaps = 17/268 (6%) Query: 35 SPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVSLSSPGGSAYAG 83 V + +RGQI D ++ E + + + D + + + Sbjct: 129 KGSVLTMTLRGQISDQLKSRFSSGLSLPQISENLVKAAYDPRIAGVYLHIEPLSCGWGKV 188 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 E I R I K I + Y + CA N + A ++ G+ Q ++ Sbjct: 189 EEIRRHILDFKKSGKFIVGYINICGLKEYYLGCACNELYAPPSAYSFLYGLTVQASFLGG 248 Query: 144 FLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 +K+G+ + + K+ + ++ + +M+ ++D+ Y ++ VS+S Sbjct: 249 VFEKVGIEPQVQRIGKYKSAGDQLSRKNISEENYEMLSVLLDNIYANWLDGVSDSTGKQR 308 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK----N 257 + + ++ + K+ GLI + +EV L + +K+ + K Sbjct: 309 EDVESFINQGVYEIEKLKEEGLIKDIRYDDEVISMLKERLGVEKDKKLPTVDYKKYSGVK 368 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 W L + + + K Sbjct: 369 KWTLGLSGGRDQIAIIRAGGSISRVKGP 396 >gi|257468386|ref|ZP_05632480.1| protease IV [Fusobacterium ulcerans ATCC 49185] gi|317062659|ref|ZP_07927144.1| protease IV [Fusobacterium ulcerans ATCC 49185] gi|313688335|gb|EFS25170.1| protease IV [Fusobacterium ulcerans ATCC 49185] Length = 584 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 12/250 (4%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQ---------IEDSQE---LIERIERISRDDSA 66 + S +A I G I + LIE I + +DD Sbjct: 294 SFLSKNSLLGSSTNKRKDKIALIYAEGTMYMDSPSGGISGNTTPNVLIEEINKALKDDGV 353 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 +++ ++SPGGSA + I I + KP+ + +AAS GY ++ + I A + Sbjct: 354 KGIVLRINSPGGSALSANIISNKIIEANKIKPIYVSIGGVAASGGYYLAASGEKIYADKE 413 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 SL GSIGV+ P +K L + +++ VK S + + + Y Sbjct: 414 SLTGSIGVVSIIPNIKKMLGNVSINVDEVKKGEYSDIYSMVKDFDADKRDKLYASNLKVY 473 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + F+ VS R + ++ G++W G EA ++GL+D +GG E+ + L Sbjct: 474 NEFIDTVSFGRKLNRQHVEKIAQGKVWLGEEALELGLVDEIGGLEDTVKGLADDLKLVEY 533 Query: 247 RKIKDWNPPK 256 ++ N P Sbjct: 534 DTVEIINAPN 543 Score = 68.5 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 101/288 (35%), Gaps = 33/288 (11%) Query: 3 FVLKKIKTRYV-MLSLVTLTVVYFSWSSHVEDNSPHVARIA------------------- 42 FV+K+I + ++ + + ++ + V I Sbjct: 17 FVIKEIFSFFIKAFLFLVVIFSIVAFFAKTTLEKDKV-VIEKGSYIEVDLSKEYKEKGKN 75 Query: 43 ----IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 +RGQ + +++ + + RD + +++ L + ++ E + + + +K K Sbjct: 76 LPGFLRGQDTNFFSMLKTFDYLERDSNIKGVVLKLDNLSLNSAQVEELGKKLDSLKKNKK 135 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSL--VGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 + MA + Y ++ S+ I V G + Y K D++G+ + Sbjct: 136 EVYSYMTMADNRNYSLAIKSDHIFMPPAMSAPVNITGYYGELMYYKLLADRMGIEFNVIH 195 Query: 157 SSPMKAE--PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIW 213 KA ++ + + ++ + + Y FV ++ R + +D + +G + Sbjct: 196 VGDYKAYGENLTKEHISKEYKENIERMYNKKYANFVNNITVERKVNHDFINEKILNGDLM 255 Query: 214 TGA--EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 + KK+ LID E + + G S + + Sbjct: 256 ASEPNQMKKLNLIDEFMYYEN-LKQVIGEGKLLSFESYNSFLSKNSLL 302 >gi|83945357|ref|ZP_00957705.1| probable proteinase [Oceanicaulis alexandrii HTCC2633] gi|83851191|gb|EAP89048.1| probable proteinase [Oceanicaulis alexandrii HTCC2633] Length = 281 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 58/256 (22%), Positives = 111/256 (43%), Gaps = 18/256 (7%) Query: 34 NSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 + P V I + G I Q + ++IE+ A+A+ + ++SPGGS Sbjct: 25 DKPVVPVIRLEGVIMSGGRNANALNLQRVEKQIEKAFSMTDASAVALLINSPGGSPVQSR 84 Query: 85 AIFRAIQKVKNRKPVIT--EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I I+ + N K ++AAS GY ++ A++ I +++GSIGV+ Sbjct: 85 LIHERIRALANEKDKAVLAFCEDVAASGGYFLAVAADEIFVDPATIIGSIGVINAGFGFT 144 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY- 201 ++KLGV + + K PFS + M+ ++++ + F+ LV R Sbjct: 145 EAMEKLGVERRVKTAGKSKLIADPFSPETDAQKERMERLLNTVHGQFIELVKSRRGEKLN 204 Query: 202 -DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 + L DG ++TG EA + G+ D +G V ++ + ++K ++P + Sbjct: 205 PQEGEELFDGSVFTGTEALQNGIADEIGDLRSVVRARFG-----EDVRVKVFSPARQGPL 259 Query: 261 CDLKNLSISSLLEDTI 276 L ++ + + Sbjct: 260 SRLFGAALDGVELRAV 275 >gi|225569105|ref|ZP_03778130.1| hypothetical protein CLOHYLEM_05185 [Clostridium hylemonae DSM 15053] gi|225161904|gb|EEG74523.1| hypothetical protein CLOHYLEM_05185 [Clostridium hylemonae DSM 15053] Length = 325 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 66/283 (23%), Positives = 127/283 (44%), Gaps = 20/283 (7%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------ELIERIERISRDDSATA 68 + NS ++A + + G I++ +E I+ + D T Sbjct: 41 ILTGGYELNAPNSDYIAVVKVEGTIQEQTASSLFETAEGYQHTTTMEYIDFLMSDSDNTG 100 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAET 126 +++ + SPGG+ Y E +++ + + K+ +P+ + AAS GY +S A++ I A Sbjct: 101 ILLYVDSPGGTVYESEELYQKLNEYKDATGRPIWGYMAHYAASGGYYVSMAADNIYANPN 160 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 ++ GSIGV+ + +KLG+ S+ S K S+++ + + Q VD S+ Sbjct: 161 TVTGSIGVIMAGYDMSGLYEKLGIRYVSITSGKNKDS----SKLDEDQIAIYQTQVDESF 216 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 FV +V++ R++ D+ L+DGR +T +AK+ GLID + E++ + + Sbjct: 217 GRFVDIVADGRDMSSDEVKKLADGRTYTAKQAKENGLIDNISLYEDIKADMGSELGTNVF 276 Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 ++K F +K L S + + + GL Sbjct: 277 YELKSKTSALASLFGSVKELVPKSEAQVLTETASEKENGGLMY 319 >gi|13540860|ref|NP_110548.1| secreted serine protease (ClpP class) [Thermoplasma volcanium GSS1] gi|14324243|dbj|BAB59171.1| proteinase IV [Thermoplasma volcanium GSS1] gi|215414354|emb|CAT00893.1| signal peptide peptidase-like protein [Thermoplasma volcanium GSS1] Length = 230 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 4/230 (1%) Query: 37 HVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 ++ RI I G I + L ++ S LI+ +S GG A + + I ++K++ Sbjct: 2 YLLRINIEGTINYGLYKYLYPALKAAEGKKSIAGLILVFNSGGGDAASSQLIHDLVKKIR 61 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 +KPV + + AS Y I+ AS I A +TSL+GSIGV+ P VK ++K+GV + Sbjct: 62 KKKPVYSLALGICASGAYWIASASTKIYAIDTSLIGSIGVISIRPNVKKLMEKIGVDVMV 121 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 KS K SPFSE N + + Q ++D + F R V+E R IP +K +++G +++ Sbjct: 122 YKSGKYKDMTSPFSEPNEEEKSVYQRLLDDIFEKFKRSVAEDRGIPSEKIDEIANGMVYS 181 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 A GLID + +++ L K+K++ K L Sbjct: 182 AKMAADNGLIDRIANYDDLVSDLTKEVG--KRLKVKEFYIRKPLLQRLLG 229 >gi|332187455|ref|ZP_08389193.1| signal peptide peptidase SppA, 67K type [Sphingomonas sp. S17] gi|332012616|gb|EGI54683.1| signal peptide peptidase SppA, 67K type [Sphingomonas sp. S17] Length = 620 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 65/258 (25%), Positives = 118/258 (45%), Gaps = 10/258 (3%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSA 66 S T+ + ++ + + + I G I D + + + Sbjct: 287 SFRTIGYDAWVRANPLPSKGDAIGVLTIAGNIVDGDAGPGTAAGDTISKALLDGLAKKKL 346 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAE 125 AL+V + SPGGS A E I +AI + K +K PV+ + +AAS GY +S ++II A Sbjct: 347 KALVVRVDSPGGSVLASEQIRQAILEAKRQKLPVVVSMGGLAASGGYWVSTPADIIFAEP 406 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 ++ GSIG+ P + L K+GV+ VK++P+ +P P ++Q +++ Sbjct: 407 GTITGSIGIFGLIPSFENTLAKIGVTTDGVKTTPLTGQPDVLGGFTPMLDTILQAGIENG 466 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y F+ V++SR++ +K ++ GR+W G A+++GLID G + Sbjct: 467 YRQFLTRVAQSRHMTPEKVDTIAQGRVWDGGTARQIGLIDRFGNLSDAVAEAARRAKLDP 526 Query: 246 IRKIKDWNPPKNYWFCDL 263 ++ K + +L Sbjct: 527 ANIHAEYLEKKPGFAAEL 544 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 89/274 (32%), Gaps = 30/274 (10%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------- 50 +K + ML L + + S + + G + + Sbjct: 11 IKDLLVLVAMLLFFGLIFAALNARPGTKAISDGALLLKLDGPVVEQPETVAPFAMLSGRG 70 Query: 51 -------QELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRKPVITE 102 ++++ I+ D L++ L + GG+ A + + A+ + + + Sbjct: 71 SPRQFRLRDVVRAIDAARDDARVKVLVLDLDAFGGAYPAAIQEMGDALARFRKGGKPVLT 130 Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 Y ++ ++ I +G Y K +DKLGV+ + K+ Sbjct: 131 YATAYTDGAYRLAAHASEIWVNPLGGTLFMGPGGNQLYYKGLIDKLGVTAHVYRVGKFKS 190 Query: 163 EPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESR------NIPYDKTLVLSDGRIWT 214 P+ ++ +P A Q + + + + V+++R + Sbjct: 191 FVEPYIRTDQSPDARAASQALYGTLFAQWRESVAKARPKAQIDGFLTQPDRAVLAANGNI 250 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 K GL+D +G + + + + ++ + Sbjct: 251 AEANLKAGLVDRLGDRMAFGKRVAEIAGVENGKP 284 >gi|119472416|ref|ZP_01614534.1| protease IV, a signal peptide peptidase [Alteromonadales bacterium TW-7] gi|119444938|gb|EAW26236.1| protease IV, a signal peptide peptidase [Alteromonadales bacterium TW-7] Length = 621 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 69/258 (26%), Positives = 126/258 (48%), Gaps = 12/258 (4%) Query: 36 PHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 VA + RG I D + + + DD A+++ + S GGS +A E I Sbjct: 323 EKVAVVVARGTIVDGERRAGEIGGDSTAALLRKARLDDKVKAVVLRIDSGGGSMFASEVI 382 Query: 87 FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + +K KPVI + +AAS GY I+ A+N I AA +++ GSIGV + + L Sbjct: 383 RAEVLALKAAGKPVIASMSSVAASGGYWIASAANEIWAAPSTITGSIGVFGTFMTFENTL 442 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV V ++ M S +N K Q++Q V+ +Y F+ +V+++R + ++ Sbjct: 443 SKIGVYSDGVATTEMAG-FSVTRPLNEKMAQVIQMSVEEAYGRFLNVVAQARGMTPEEVD 501 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 ++ GR+W ++A ++GLID +G +++ + AL +K + L++ Sbjct: 502 AIAQGRVWIASQALELGLIDKLGDKQDAIDAAAALAKL-ENYDVKTITQDLSPQEKMLQD 560 Query: 266 LSISSLLEDTIPLMKQTK 283 + S+ L+ + L + Sbjct: 561 IFGSASLKSMLGLQTKAP 578 >gi|166032602|ref|ZP_02235431.1| hypothetical protein DORFOR_02317 [Dorea formicigenerans ATCC 27755] gi|166026959|gb|EDR45716.1| hypothetical protein DORFOR_02317 [Dorea formicigenerans ATCC 27755] Length = 325 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 60/286 (20%), Positives = 117/286 (40%), Gaps = 20/286 (6%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDS 65 +T + ++ + + G I++ + ++ I+ + D Sbjct: 38 VTTMLAGELEFDPPADDYIGVVNVVGTIQEQTQSSVLDTSSGYQHNTTMDYIDNLMDDSD 97 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVA 123 +++ + SPGG+ Y E + + + K +P+ T + AAS GY+ S + I A Sbjct: 98 NKGILLYVDSPGGAVYESEELHDKLIEYKETTGRPIWTYMAHYAASGGYMTSVTGDKIYA 157 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 + ++ GSIGV+ + +KLG+ S+ S K S++ + V + Q VD Sbjct: 158 NKNTVTGSIGVIMSGYDMSGLYEKLGIRYVSITSGVNKDS----SKLTDEQVAIYQSQVD 213 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 Y FV +V++ R++ D+ L+DGR +T +AK GLID + ++V + + Sbjct: 214 ECYQEFVNIVADGRDMSADQVKALADGRTYTAKQAKANGLIDEIATYQDVMNQMASELGV 273 Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 F + L S + ++ + L Sbjct: 274 DEFYTPSSEESILAAIFSKAEKLVPKSEAQILKETAEEKESGVLMY 319 >gi|319406065|emb|CBI79695.1| protease [Bartonella sp. AR 15-3] Length = 275 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 67/271 (24%), Positives = 119/271 (43%), Gaps = 18/271 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQELIER----------IERISRDDSATALIVSLSSPGGSA 80 N+ + + ++G I S L+ R +++ A A+ + ++SPGGS Sbjct: 5 FRSNTVQIPVVRLQGAIISSNSLMSRTLSLARSASLLDKAFSYKKAPAVALIINSPGGSP 64 Query: 81 YAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 IF+ I+ + N K T V ++AAS GY+I+CA + I A +S+VGSIGV+ Sbjct: 65 VQSRLIFQRIRDLANEKNKQVFTFVEDVAASGGYMIACAGDEIFADPSSIVGSIGVVSAS 124 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 L K+GV + + K PF V ++ + + F+ LV E R Sbjct: 125 FGFPELLKKIGVERRVYTAGKNKVTLDPFQPEKKTDVDHLKSLQLEVHQTFIDLVKERRM 184 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + G W+G + ++GLID +G V + + + K++ +PPK+ Sbjct: 185 SKLSDDPNIFTGMFWSGKKGVELGLIDELGDVRSVIKKRFG-----NNAKLRLISPPKSL 239 Query: 259 WFCDL-KNLSISSLLEDTIPLMKQTKVQGLW 288 + +S ++ +M + + LW Sbjct: 240 LSSKVHLGISTDTIYTAVDGVMMAAEERVLW 270 >gi|126651359|ref|ZP_01723566.1| SppA [Bacillus sp. B14905] gi|126591888|gb|EAZ85971.1| SppA [Bacillus sp. B14905] Length = 337 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 67/261 (25%), Positives = 123/261 (47%), Gaps = 16/261 (6%) Query: 30 HVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSLSSP 76 ++ +A + + G I+D Q +++++ I DD+ +++S++SP Sbjct: 54 EGDNYDKRIAYLKVDGTIQDIGSSSLWQPVAYDHQFFLDQLDNILYDDTIQGIVLSVNSP 113 Query: 77 GGSAYAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG I++ + K+K + + + MAAS GY IS ++ I A ++ GSIGV Sbjct: 114 GGGVKESAEIYKKLLKIKEERQIPIYVSMDSMAASGGYYISAPADKIFAHRDTITGSIGV 173 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + Q + +K+GV ++ KS K SP +V P+ MMQD+++ +Y FV +V Sbjct: 174 IMQSINYQALAEKVGVKFETFKSGEHKDMLSPMRDVTPEERAMMQDMINETYEEFVDIVE 233 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + RN+ ++DGRI G +A + GL+D +G +E +L A + + ++ Sbjct: 234 QGRNMSEADVKKVADGRILGGTKALEAGLVDEIGDEEAAIAALRADFGLEDAA-LFEYAY 292 Query: 255 PKNYWFCDLKNLSISSLLEDT 275 W + S Sbjct: 293 DMGGWQSYVGMKIGSMFGPSA 313 >gi|51246051|ref|YP_065935.1| proteinase IV [Desulfotalea psychrophila LSv54] gi|50877088|emb|CAG36928.1| related to proteinase IV [Desulfotalea psychrophila LSv54] Length = 606 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 60/259 (23%), Positives = 113/259 (43%), Gaps = 12/259 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSL 73 + P +A G+I S+ LI I+ D++ AL++ + Sbjct: 306 LATIPPREYSSEKPTIAVAIAEGKILPGLQPAGVIGSESLIRIIKEARDDENIKALVLRI 365 Query: 74 SSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 +S GGSA+A E I + + K + K +I + +AAS GY IS ++ I A+ ++ GSI Sbjct: 366 NSGGGSAFASELIRQELLAFKAKGKTLIVSMGRLAASGGYWISADADQIWASPATITGSI 425 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 G+ P + L LG+ V +SP+ + + +Q + Y F+ + Sbjct: 426 GIFAAIPTFEKSLAHLGIYCDGVGTSPLAGATNISKPLTEPIKAALQISIKHGYRQFINI 485 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 VS R I +K ++ G +++G +A ++GL+D +G + ++ + I + Sbjct: 486 VSIGRGIEPEKVEAMAQGHVYSGKKALQLGLVDKLGNLSQAIEAAAIEAGIKDYNLI--Y 543 Query: 253 NPPKNYWFCDLKNLSISSL 271 + + L + L Sbjct: 544 LEKELSLQERVLQLFSAGL 562 Score = 80.0 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 48/343 (13%), Positives = 121/343 (35%), Gaps = 57/343 (16%) Query: 3 FVLKKIKTR-------------YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED 49 F++K K + ++ ++V F S + + + G I + Sbjct: 5 FIMKIFKFFIKTLNILRLLILNFFFWGIIIFSLVLFINKEEATLESNSILLLNLNGNIVE 64 Query: 50 S-------------------------QELIERIERISRDDSATALIVSLSSPGGSAYAG- 83 +++I IE+ ++D ++ + + G + + Sbjct: 65 EKTALSPLTGLAGDYLNRAPKQEMRLRDIIRVIEQAAKDPKIVSIQLDTTKMGNAGFNSL 124 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + I +A+ K K I + + + GY ++ ++ I+ VG G+ Y K Sbjct: 125 KDISKALDLFKKSKKKIIAIQDNYSQKGYYLAAHADTIIMNPVGFVGVHGLSSYRLYFKR 184 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 +DKL ++ K+ PF + ++ + + +D + + + + R++ Sbjct: 185 AIDKLFINYNVFLVGDYKSALEPFTRNSMSGRDKEQTRDWLTDLWGIYRNDIIAQRDLSD 244 Query: 202 DKT---------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 +L++ + A + GL+D + + +V L L + D+ Sbjct: 245 ANMLYNYTHNLPELLAEVGGDSAKLAVQAGLVDKLLQRHQVSPYLKELSYNPENT--VDF 302 Query: 253 NP-----PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 N P + + ++++ +P ++ V G ++ Sbjct: 303 NQYLATIPPREYSSEKPTIAVAIAEGKILPGLQPAGVIGSESL 345 >gi|332535711|ref|ZP_08411463.1| protease IV [Pseudoalteromonas haloplanktis ANT/505] gi|332034886|gb|EGI71415.1| protease IV [Pseudoalteromonas haloplanktis ANT/505] Length = 588 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 70/277 (25%), Positives = 137/277 (49%), Gaps = 15/277 (5%) Query: 18 VTLTVVYFSWSSHVEDNSP---HVARIAIRGQIEDSQ---------ELIERIERISRDDS 65 V+ +E ++P VA + +G I D + + + DD Sbjct: 269 VSFREYLSLIKPPIEIDNPITEKVAVVVAKGTIVDGERKAGEIGGDSTAALLRKARLDDK 328 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAA 124 A+++ + S GGS +A E I + +K KPVI + +AAS GY I+ A+N I AA Sbjct: 329 VKAVVLRIDSGGGSMFASEVIRAEVLALKAAGKPVIASMSSVAASGGYWIASAANEIWAA 388 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 +++ GSIGV + + L K+GV V ++ M S +N K Q++Q V+ Sbjct: 389 PSTITGSIGVFGTFMTFEKTLSKIGVYSDGVATTEMAG-FSITRPLNEKMGQVIQMNVEE 447 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 +Y F+ +V+++RN+ ++ ++ GR+W ++A ++GL+D +G +++ ++ AL Sbjct: 448 AYGRFLNVVADARNMTPEQVDKIAQGRVWIASQALELGLVDKLGDKQDAIEAAAALAKL- 506 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 + ++K + ++N+ ++ ++ + L Q Sbjct: 507 NHYEVKTIKQDLSSQEKMIQNIFGNASIKSMLGLQTQ 543 Score = 78.5 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 44/295 (14%), Positives = 95/295 (32%), Gaps = 37/295 (12%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQIEDS--------------------------QELIE 55 + S + + V R+ + G I + +++E Sbjct: 1 MSLSSDDDQIIVENGSVLRLNLNGPIVEEKTYIDPVEAAISDATSGSEAPSEILLDDIVE 60 Query: 56 RIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 I ++DD T +++ L P + I +AI K + A Y I Sbjct: 61 VINEATKDDRITVILLDLQEMPKAHLNKLKQITKAIDAFKQAGKKVIASGYYYTQAQYYI 120 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNP 172 + ++ I VG G Y K L+KL V+ + K+ PF ++++ Sbjct: 121 ASHADEIAMHPYGSVGIEGYGMYPLYFKDALEKLEVTQHIFRVGTFKSAVEPFIRNDMSD 180 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVLSDGRIWTGAEAKKVGLI 224 A + + + + + + + V+ R + G A + Sbjct: 181 AAKEANRVWLGALWSEYKQDVAAVRPFDESNFDETMDVYLEKMKAADGDAGKYALDHQWV 240 Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 D + ++V + L L + K + Y + I + + + + ++ Sbjct: 241 DSLKTNQQVRKQLIDLVGTREDGKTFKQVSFREYLSLIKPPIEIDNPITEKVAVV 295 >gi|304382981|ref|ZP_07365462.1| signal peptide peptidase SppA [Prevotella marshii DSM 16973] gi|304335900|gb|EFM02149.1| signal peptide peptidase SppA [Prevotella marshii DSM 16973] Length = 591 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 67/285 (23%), Positives = 128/285 (44%), Gaps = 18/285 (6%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIED--------------SQELIERIERISRDDS 65 L++ + +A G I +Q++ + ++ + DD Sbjct: 285 LSIADMANVKEGSSEGEQIAVYYAEGGIVQTSLSGTFSGGQEIVAQDVCKDLKELMEDDD 344 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 A+++ ++S GGS+YA E ++ I ++K +KPV+ + AAS GY +SC ++ IVA Sbjct: 345 VKAVVIRVNSHGGSSYASEQLWHQITELKKKKPVVVSMGGYAASGGYYMSCGADWIVAQP 404 Query: 126 TSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPM--KAEPSPFSEVNPKAVQMMQDVV 182 T+L GSIG+ +P + L +KLGV VK++ + N + ++Q V Sbjct: 405 TTLTGSIGIFGAFPDMSGLLTEKLGVRFDEVKTNRNSAFSFIRTAHPFNAEETALLQAYV 464 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + Y F + V++ R + ++ G +WTG +A ++GL+D +GG +E A Sbjct: 465 NRGYTLFRKRVADGRKRSVEAIENMAQGHVWTGRDALRIGLVDQLGGLDEAIAK-AAKLA 523 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 +++ ++ ++ S L+D + Q Sbjct: 524 KLDEYYTENYPEEADFIDQLFASVGRRSYLDDQLRAALGEYYQPF 568 Score = 94.3 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 87/260 (33%), Gaps = 23/260 (8%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-------------------SQEL 53 + + L+++ + S S + V + + G I+D ++ Sbjct: 23 IFIGLMSIVGMLASESQTKNVSENSVLVMNMAGVIQDKTQPNILGKLTGENIAQLGLSDI 82 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 + +++ +D + + + I A K + + + Y Sbjct: 83 LSAVKKAKNNDDIKGIYIEAGLLQADYATLQEIRNAFLDFKKSGKWVIAYADDYSQGAYY 142 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE--PSPFSEVN 171 ++ ++ I + G+ + + K K GV + VK K+ +++ Sbjct: 143 LASVADKIYINPQGTLDWHGLAARPVFYKDLYAKFGVKYQVVKVGRYKSFTEQYTEEKMS 202 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--GAEAKKVGLIDVVGG 229 + + ++ ++ + VSESR I D +D + E K +ID + Sbjct: 203 DANREQVSAFLNGTWKDICQAVSESRKISVDSLNAYADRFMLLTDAKELLKYRMIDGLLY 262 Query: 230 QEEVWQSLYALGVDQSIRKI 249 +++ + + + I Sbjct: 263 ADQIKPEVCKRLGIEPDKDI 282 >gi|296109597|ref|YP_003616546.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus infernus ME] gi|295434411|gb|ADG13582.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus infernus ME] Length = 300 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 61/215 (28%), Positives = 127/215 (59%), Gaps = 1/215 (0%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 D+ I ++++ +D S +++ ++SPGG A E + + +++V +KPV+ + + A Sbjct: 57 DANYYINLLDKLEKDKSVKGVLLIINSPGGEVVASEELAKKVKEVSEKKPVVAYIQTIGA 116 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 S Y+++ +SN IVA S+VGSIGV + + KLG+++ ++K+ K SP+ Sbjct: 117 SGAYMVASSSNYIVAQRHSVVGSIGVRMDIIHFYGLMKKLGINVTTIKAGKYKDIGSPYR 176 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 + P+ ++++ +++ +Y++F+ V+++RN+ + T +++G+I+ G +AKKVGL+D VG Sbjct: 177 PMTPEEKKILEKMINETYNYFIMWVAKNRNLSINYTKKIAEGKIYLGEDAKKVGLVDEVG 236 Query: 229 GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 +E + L L + I+++ + F L Sbjct: 237 DEEVALKKLEELANVTN-PTIEEYGLSETSGFFGL 270 >gi|169829578|ref|YP_001699736.1| putative signal peptide peptidase sppA [Lysinibacillus sphaericus C3-41] gi|168994066|gb|ACA41606.1| Putative signal peptide peptidase sppA [Lysinibacillus sphaericus C3-41] Length = 337 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 68/261 (26%), Positives = 123/261 (47%), Gaps = 16/261 (6%) Query: 30 HVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSLSSP 76 ++ +A + + G I+D Q +E+++ I DD+ +++S++SP Sbjct: 54 EGDNFDKRIAYLKVDGTIQDIGSSSLWQPVAYDHQFFLEQLDSILYDDTIEGIVLSVNSP 113 Query: 77 GGSAYAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG I++ + K+K + + + MAAS GY IS ++ I A ++ GSIGV Sbjct: 114 GGGVKESAEIYKKLLKIKEERQIPIYVSMDSMAASGGYYISAPADKIFAHRDTITGSIGV 173 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + Q + +K+GV ++ KS K SP +V P+ MMQD+++ +Y FV +V Sbjct: 174 IMQSINYQALAEKVGVKFETFKSGEHKDMLSPMRDVTPEERAMMQDMINETYEEFVDIVE 233 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + RN+ ++DGRI G +A + GL+D +G +E +L A + + ++ Sbjct: 234 QGRNMSEADVKKVADGRILGGTKALEAGLVDEIGDEEAAIAALRADFGLEDAV-LFEYAY 292 Query: 255 PKNYWFCDLKNLSISSLLEDT 275 W + S Sbjct: 293 DMGGWQSYVGMKIGSMFGPSA 313 >gi|319899201|ref|YP_004159294.1| protease [Bartonella clarridgeiae 73] gi|319403165|emb|CBI76724.1| protease [Bartonella clarridgeiae 73] Length = 282 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 19/268 (7%) Query: 37 HVARIAIRGQIEDSQELIER----------IERISRDDSATALIVSLSSPGGSAYAGEAI 86 + + ++G I S L+ R +++ A + + ++SPGGS I Sbjct: 18 QIPVVRLQGAIISSNSLMSRTLSLARCASLLDKAFSYKKAPVVALIINSPGGSPVQSHLI 77 Query: 87 FRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 F+ I+ + N K T V ++AAS GY+I+CA + I A +S+VGSIGV+ Sbjct: 78 FQRIRDLANEKNKQVFTFVEDVAASGGYMIACAGDEIFADPSSIVGSIGVVSASFGFPEL 137 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K+GV + + K PF V ++ + + F+ LV E R Sbjct: 138 LKKIGVERRVYTAGKNKVTLDPFQPEKKTDVDHLKSLQLEVHQTFIDLVKERRTSKLSDD 197 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 + G W+G + ++GLID +G V + + + K++ +PPK+ + Sbjct: 198 SNIFTGMFWSGQKGVELGLIDELGDVRSVIKKRFG-----NNAKLRLISPPKSLLSSKVP 252 Query: 265 NLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + + + + + A+W Sbjct: 253 LGISADIAYTAVDGVMMAAEEQ--ALWQ 278 >gi|262277441|ref|ZP_06055234.1| peptidase family S49 [alpha proteobacterium HIMB114] gi|262224544|gb|EEY75003.1| peptidase family S49 [alpha proteobacterium HIMB114] Length = 268 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 70/269 (26%), Positives = 129/269 (47%), Gaps = 22/269 (8%) Query: 33 DNSPHVARIAIRGQIEDSQELI---------ERIERISRDDSATALIVSLSSPGGSAYAG 83 P VA I + G I + + I++ +A+ +S++SPGGS Sbjct: 4 SKKPQVAHIRLSGVIGNVGRFQQGMSLSSHEKIIKKAFNQKKLSAVAISINSPGGSPVQS 63 Query: 84 EAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 I+ I+++ K V IT ++AAS GY+++CA + I A +S+VGSIGV++ + Sbjct: 64 HLIYSLIRRLAEEKKVKVITFAEDVAASGGYMLACAGDEIYANPSSIVGSIGVIYSSFGL 123 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 K + K+G+ + + K+ PF + P+ ++ ++ + + F+ LV SR Sbjct: 124 KELIKKIGIERRVHTAGKNKSTLDPFMDEKPEDIERLKKIQLDLHDQFISLVKNSRKDKI 183 Query: 202 --DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 DK L G W+G ++K++GL+D +G E+V Q + V IK ++ P+++ Sbjct: 184 SSDKDDQLFTGEFWSGIQSKELGLVDGLGNMEDVIQEKFGKKVV-----IKKFDKPESWL 238 Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 L S + + + + + LW Sbjct: 239 KRKL----SSQISNQFSNVADEIETRSLW 263 >gi|225455748|ref|XP_002268894.1| PREDICTED: similar to SPPA (signal peptide peptidase); protease IV/ serine-type endopeptidase [Vitis vinifera] Length = 686 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 64/272 (23%), Positives = 113/272 (41%), Gaps = 17/272 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSL 73 W+ + +A I G I S++ IE+I + A+I+ + Sbjct: 375 WTLGLSGGKDQIAVIRASGSISRVRSPFSIPGSGITSEQFIEKIRSVRDSKRYKAVIIRI 434 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 SPGG A A + ++R I+ + KPVI + ++AAS GY ++ + IVA +L GSIG Sbjct: 435 DSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGTIVAENLTLTGSIG 494 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP-FSEVNPKAVQMMQDVVDSSYHWFVRL 192 V+ + +K+G + + + + P ++ ++Y F Sbjct: 495 VVTGKFNLGTLYEKIGFNKEIISRGRFAELTAAEQRPFRPDEAELFAKSAQNAYKQFRDK 554 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--K 250 + SR++ DK + GR+WTG +A GL+D +GG R + Sbjct: 555 AAFSRSMAVDKMEENAQGRVWTGKDAASRGLVDAIGGLSRAVAIAKQKADIPQDRPVTLV 614 Query: 251 DWNPPKNYWFCDLKNLSISS-LLEDTIPLMKQ 281 + + P L + S +E T+ + Q Sbjct: 615 ELSRPSPTVSEILTGIGSSIVGVERTLKELLQ 646 Score = 83.9 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 102/301 (33%), Gaps = 21/301 (6%) Query: 2 EFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS----------- 50 +F K++ + ++ + ++ F W V + +RGQI D Sbjct: 105 DFEFKEM-SGWMSFVVKLRMLIAFPWE---RVRKGSVFTMKLRGQISDQLKSRFSSGLSL 160 Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 ++ E + + D + + + + E I R I K I Sbjct: 161 PQICENFIKAAYDPRISGIYLHIEPLSCGWGKVEEIRRHILDFKKSGKFIVAYAPACGEK 220 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFS 168 Y + A + + A ++ G+ Q ++ +K+G+ + + K+ + Sbjct: 221 EYYLGSACDELYAPPSAYFSLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLTRK 280 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 ++ + +M+ ++D+ Y ++ +S ++ + T + ++ + K+ G I + Sbjct: 281 TMSEENCEMLTALLDNIYGNWLDKISSAKGKKREDTENFINEGVYQVEKLKEEGWITNIN 340 Query: 229 GQEEVWQSLYALGVDQSIRKI--KDWNP--PKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 +EV L + + D+ W L + + + + Sbjct: 341 YDDEVISILKERLGQPKDKNLPMVDYRKYSKVRKWTLGLSGGKDQIAVIRASGSISRVRS 400 Query: 285 Q 285 Sbjct: 401 P 401 >gi|170740974|ref|YP_001769629.1| peptidase S49 [Methylobacterium sp. 4-46] gi|168195248|gb|ACA17195.1| peptidase S49 [Methylobacterium sp. 4-46] Length = 287 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 69/259 (26%), Positives = 115/259 (44%), Gaps = 11/259 (4%) Query: 36 PHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 P VA + + G I L +ER A+ + ++SPGGSA I Sbjct: 22 PLVAVVRLSGPIGAVSPLRQGLSLGTCAPALERAFGLPGLKAVALVINSPGGSAAQSHLI 81 Query: 87 FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I+ + K PV+ V ++AAS GY+I+CA++ IVA +SLVGSIGV+ + Sbjct: 82 HHRIRALAEEKKLPVLAFVEDVAASGGYMIACAADEIVADPSSLVGSIGVVSAGFGFQGL 141 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L++LGV + + P KA PF +P V ++ + F LV R + Sbjct: 142 LERLGVERRVHTTGPSKAMLDPFRPEDPADVARLKGIQADIQALFTDLVRARRPSLSGEP 201 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 L G +W+G +A +GL+D +G V ++ Y V+ + + Sbjct: 202 ADLFSGAVWSGRQALALGLVDALGDLRGVLRARYGDKVEIRVVEQVRGGLLARLLRRREP 261 Query: 265 NLSISSLLEDTIPLMKQTK 283 +L+E + ++++ Sbjct: 262 GAEGLALVEGALAVLEERA 280 >gi|85707607|ref|ZP_01038673.1| periplasmic serine protease [Erythrobacter sp. NAP1] gi|85689141|gb|EAQ29144.1| periplasmic serine protease [Erythrobacter sp. NAP1] Length = 629 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 57/231 (24%), Positives = 112/231 (48%), Gaps = 10/231 (4%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIEDSQELIE---------RIERISRDDSATALIVSLSS 75 F D+S +A + + G I D + D L+V ++S Sbjct: 301 FLADIGNGDSSGEIAVVTVAGTIVDGDAGPGAAGGARIAGLLNDALATDDIKGLVVRVNS 360 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVI-TEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 PGGS A E I RA+Q+ +++ + +AAS GY ++ +S+ I A ++ GSIGV Sbjct: 361 PGGSVLASEEIRRAVQRFRDKDIPVAVSFANVAASGGYWVATSSDRIFAQPETITGSIGV 420 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 P + ++GV+ + +++P+ +P + ++P+ ++Q V +Y F+ V+ Sbjct: 421 FAVIPTFEDAAAEIGVNAEGFRTTPLSGQPDLIAGLSPEVDAILQAGVSDTYSDFLTRVA 480 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 E+R + ++ ++ GR+W G A+++GL+D GG ++ + + Sbjct: 481 EARGLTVEQVDTMAQGRVWDGGTARQLGLVDQFGGLQDAINWVAEKAELEE 531 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 85/236 (36%), Gaps = 13/236 (5%) Query: 50 SQELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 +++L+ ++ + DD A+++ +S+ G +AI A+ +V+ + Sbjct: 81 ARDLVRALDAAAGDDRIKAVVMDMSAFVGGGQVHMQAIGEAMDRVRKADKPVLTYAVAYG 140 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167 ++ ++ + A G Y LDKL ++ + + K+ P+ Sbjct: 141 DDHMHLAAHASEVWADPLGGAIIAGPGGANLYYAELLDKLNINTRVYRVGEFKSAVEPYI 200 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-------TGAEAK 219 + + A + + + + + + V ++R D V+ D W A Sbjct: 201 LNGPSDAARENREALYGALWEEWQANVKKAR-PSLDLDRVIGDPVAWVEASSGDLAEAAL 259 Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRKI--KDWNPPKNYWFCDLKNLSISSLLE 273 + GL+D +G E + + + + K + D+ N S + Sbjct: 260 EAGLVDNLGDSVEFGTRVAEIVGEDTSTKKPGTYAKSDLRPFLADIGNGDSSGEIA 315 >gi|258652617|ref|YP_003201773.1| signal peptide peptidase SppA, 36K type [Nakamurella multipartita DSM 44233] gi|258555842|gb|ACV78784.1| signal peptide peptidase SppA, 36K type [Nakamurella multipartita DSM 44233] Length = 561 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 13/227 (5%) Query: 37 HVARIAIRGQIEDSQELIERIERISRDDSA-------------TALIVSLSSPGGSAYAG 83 HVA + I+G I+ + + R + D+ A+++ + SPGGSA A Sbjct: 273 HVALVTIQGTIDSGRSRRGLMGRTAGSDTVGAALRAAAADERARAVVLRVDSPGGSAVAS 332 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 E I+R + ++ KPVI + +AAS GY ++C ++ IVA +L GSIGV V+ Sbjct: 333 ETIWREVCLLQRAKPVIVAMGAVAASGGYYVACPADRIVALPATLTGSIGVFGGKVVVQE 392 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 + +LG+S SV+ S + + +D+ Y FV V++ R + Sbjct: 393 LMTRLGLSAGSVQRGAHARMFSSRRPFDEDEKTNLAAGLDAIYDDFVGKVAQGRGRSTGQ 452 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 ++ GR+WTG +A GL+D +GG + + A G ++ Sbjct: 453 IEAVARGRVWTGRDAVAAGLVDELGGLRDAVRLARARGGLAPDAPVR 499 Score = 78.9 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 88/235 (37%), Gaps = 9/235 (3%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGG 78 L + S + D + +AR+ RG+ D + + + + D L+ + P Sbjct: 12 ILLELDLSTAPVELDPAEPLARLRQRGR-RDLRATLRALHEAADDPRVVGLVARVGGPL- 69 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG-----YLISCASNIIVAAETSLVGSIG 133 + + ++ + A Y+++ A + + VG +G Sbjct: 70 PWSVMQELRAGVRAFAAGGKPTLAWAQTFAEQPGAMAGYVLATAFDELWLQPGGEVGLLG 129 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 V + +++ LDKLG+ + + K + +E + + VV S + V Sbjct: 130 VALETTFLRGSLDKLGLQPQLDQRHEYKNAADTIMRTEYTRAHREALDRVVGSVFDDAVE 189 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 +++ R + + L DG A+ GL+D +G ++E ++ D+ Sbjct: 190 AIAQGRRLDPAQVRTLVDGGPTLAPAARDAGLVDRLGYRDEALAAMRVRVGDEPE 244 >gi|254480343|ref|ZP_05093591.1| signal peptide peptidase SppA, 67K type [marine gamma proteobacterium HTCC2148] gi|214039905|gb|EEB80564.1| signal peptide peptidase SppA, 67K type [marine gamma proteobacterium HTCC2148] Length = 615 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 70/279 (25%), Positives = 138/279 (49%), Gaps = 23/279 (8%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 P VA I +G + + L I + + D+S A+++ +++PGGS +A Sbjct: 320 TGEPKVAVIVAQGNMLPGDQSPGTIGADSLATMISKTAADESVKAIVLRVTTPGGSMFAS 379 Query: 84 EAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + I +V+ + + +AAS GY I+ A++ I A +T++ GSIGV+ +P + Sbjct: 380 EIIRQQILEVRANGTPVVVSMGSIAASGGYYIAAAADEIFATKTTITGSIGVIAVFPTFE 439 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + G+ V ++ + +NP+ + +Q V +SY F+++V++ R++ D Sbjct: 440 NLLQRGGIYTDGVGTTSLAGSLRLDRPLNPELTKALQAGVANSYQLFLQVVADGRSMELD 499 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPKNYWF 260 + +++GR+W+ ++A +GL+D +G ++ + L I ++ P +F Sbjct: 500 EVAAVAEGRVWSASDALSLGLVDQLGDLDDAINAAAGLADLDAFQIDYVEQPLSPSELFF 559 Query: 261 CDL-----------KNLSISSLLEDTIPLMKQTKVQGLW 288 L ++ S+SSLL + P ++ T V G Sbjct: 560 QQLAERMGSVGLLPRSHSVSSLLNLSKPYLEATGVLGSL 598 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 92/272 (33%), Gaps = 34/272 (12%) Query: 10 TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS------------------- 50 V L ++ + + S I G I D Sbjct: 26 ANLVFLLMLGVIYFVYFAGSTEPLPEQAALLINPMGTIVDQKSPVDPLQTLVAAPSPADH 85 Query: 51 ----QELIERIERISRDDSATALIVSLSS-PGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 +++IE I DD +L++ L S + I A+++ K + V + Sbjct: 86 EVLVRDVIEAIRLAKDDDRINSLVMELGSLMYVGISRTQEIVVALEEFKTSGKPVVAVGD 145 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 + YL++ ++ ++A G + + LDKL VS+ ++ K+ Sbjct: 146 YFSQDQYLLASYADELIAHPIGGAALEGFSMYHNFYAEALDKLSVSMHVFRAGEYKSAAE 205 Query: 166 PF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV--------LSDGRIWTG 215 P+ S+++ + ++ + + V +R +P L G + Sbjct: 206 PYLRSDMSTAQKSNALEWLEDLWASYTSTVEANRELPSGAVDAYVNGYASRLVAGDGDSA 265 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 +A GLID + + + + L + ++ Sbjct: 266 KDALDAGLIDQLLTRSQANEYLSDMVGARNED 297 >gi|99082363|ref|YP_614517.1| peptidase S49 [Ruegeria sp. TM1040] gi|99038643|gb|ABF65255.1| peptidase S49 [Ruegeria sp. TM1040] Length = 265 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 65/259 (25%), Positives = 114/259 (44%), Gaps = 11/259 (4%) Query: 26 SWSSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGG 78 S+ P VA + + G I + L +ER A+ + ++SPGG Sbjct: 2 SFRLPFTKRPPQVAVVRLSGAIGMAGRGSLNDSTLAPVLERAFTKGKPKAVALEINSPGG 61 Query: 79 SAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 S I I+++ + PVI V ++AAS GY ++ A++ I A +S+VGSIGV+ Sbjct: 62 SPVQSALIGARIRRLAEERDVPVIAFVEDVAASGGYWLAAAADEIYADASSVVGSIGVIS 121 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 FL + G+ + + K+ PF N + V ++ +++ + F+ V++ Sbjct: 122 AGFGAHVFLARQGLERRVHTAGESKSMLDPFRPENEEDVARLKGLLNDIHANFIDHVTDR 181 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R L G IW AK++GLID +G V Q + V IK P Sbjct: 182 RGEKLSTEEKLFTGEIWLARRAKELGLIDGIGHLRPVLQERFGDKVRLRRHGIK--KPFL 239 Query: 257 NYWFCDLKNLSISSLLEDT 275 + + + +++++ E Sbjct: 240 SRFGLSMAEDALAAVEERA 258 >gi|257463195|ref|ZP_05627594.1| protease IV [Fusobacterium sp. D12] gi|317060783|ref|ZP_07925268.1| protease IV [Fusobacterium sp. D12] gi|313686459|gb|EFS23294.1| protease IV [Fusobacterium sp. D12] Length = 564 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 65/233 (27%), Positives = 114/233 (48%), Gaps = 1/233 (0%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPG 77 + YFS ++A + + G IED ++ +E I RD++ +I+ ++SPG Sbjct: 284 IISIQEYFSLVKIKNRPKQYLALLTLEGTIEDETLFLDEVEAIQRDNNVKGVILRINSPG 343 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 GSA + ++ A++K++ + PV + AAS GY ++ A I A+ S+ GSIGV+ Sbjct: 344 GSALVADMMYHAVKKLREKVPVYVSISGTAASGGYYVAVAGEKIFASPLSITGSIGVVSM 403 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P +K VS++S+ S ++ + ++ Y F+ +VS +R Sbjct: 404 IPNFSHLREKAEVSVESISKGKYADLYSYLKPLSEENYNRIRQGNLGVYKDFLEVVSSNR 463 Query: 198 NIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 I + L+ GR+W GAEAK+ LID +GG E +L ++ + Sbjct: 464 KIETNFLDQHLAQGRVWLGAEAKEHKLIDELGGLEATIYALEQDKNLGALPIL 516 Score = 66.6 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 99/242 (40%), Gaps = 14/242 (5%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 E++ ++ I +D ++++ + E I +QK++ + + A A Sbjct: 87 EVLYALDSIRQDPRIKGVLLNADFLSWNKAQVEEIGTKLQKLQEEGKDLIVTLQEANRAN 146 Query: 112 YLISCASNIIVAA--ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP--SPF 167 Y ++ + IV + ++ Y K LD+ G+++ + K+ Sbjct: 147 YFLASYAQKIVMPPIHAASSNISPYHYEELYWKSLLDRFGITMNVIPIGDYKSYMENYSH 206 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV---GLI 224 S ++P+ + M+ +++ +Y + + L++E+R I + + G+ + GL+ Sbjct: 207 SHMSPEFRENMKRLLEHTYQYSLHLMAENRKINKNDLESWIENGELMGSSFHTLFEKGLV 266 Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDW---NPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 + E Q + +++I I+++ KN L L++ +ED + + Sbjct: 267 ----SKGEYPQRILEKIGEENIISIQEYFSLVKIKNRPKQYLALLTLEGTIEDETLFLDE 322 Query: 282 TK 283 + Sbjct: 323 VE 324 >gi|239831270|ref|ZP_04679599.1| Na(+)/H(+) antiporter nhaA [Ochrobactrum intermedium LMG 3301] gi|239823537|gb|EEQ95105.1| Na(+)/H(+) antiporter nhaA [Ochrobactrum intermedium LMG 3301] Length = 290 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 64/265 (24%), Positives = 114/265 (43%), Gaps = 18/265 (6%) Query: 38 VARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + + + G I +E+ D A A+ +SL+SPGGS I+ Sbjct: 20 IPVVRLHGAIMSGGSAFRPSLSIASTAAILEKAFTDKEAPAVAISLNSPGGSPVQSRLIY 79 Query: 88 RAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 R I+ + +++K V V ++AAS GY+I+ A + I+A +S+VGSIGV+ L Sbjct: 80 RRIRDLAAEHQKKVFIFVEDVAASGGYMIALAGDEIIADPSSIVGSIGVVSASFGFPELL 139 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV + + K PF ++ ++ + + F+ +V E R + Sbjct: 140 KKIGVERRVYTAGSNKVTLDPFQPEKKADIERLKSLQLEIHETFIDMVKERRGAKLAEDQ 199 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L G WTG +A+++GLID +G + Y K+K ++ + Sbjct: 200 DLFTGLFWTGIKAQQLGLIDGLGDMRSFLRKTYG-----DKVKLKLVEQKRSLLGRKVPG 254 Query: 266 LSISSLLEDTIPLMKQTKVQGLWAV 290 + ++ L + GL +V Sbjct: 255 VDMA-LANLEPASIAAHLGDGLLSV 278 >gi|315498282|ref|YP_004087086.1| signal peptide peptidase sppa, 67k type [Asticcacaulis excentricus CB 48] gi|315416294|gb|ADU12935.1| signal peptide peptidase SppA, 67K type [Asticcacaulis excentricus CB 48] Length = 592 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 119/283 (42%), Gaps = 19/283 (6%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIED---------------SQELIERIERISRDDSAT 67 + ++ V S +A I G I S ++ + +D Sbjct: 281 IQSYAATTVSTGSQTIAVINGEGPIMTGKGSGGGFGSEAQMLSDDVAQAFYDAVENDKVK 340 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAET 126 A++ +SSPGGS A E I RA+ K KPV+ + + AAS GY +S ++ IVA T Sbjct: 341 AIVFRVSSPGGSDTASEQISRALAYAKKSGKPVVVSMGDYAASGGYWVSAGASAIVANPT 400 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-PMKAEPSPFSEVNPKAVQMMQDVVDSS 185 +L GSIGV + + GV + + S K Q + + +D+ Sbjct: 401 TLTGSIGVYGGKMAIGEAASRFGVDFRQIGVGSEYAGAYSAGKPFTDKQTQAISNWMDTI 460 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y+ F+ V+E R + ++ ++ GR+WTGA+AK++GL+D GG L Sbjct: 461 YNAFIGHVAEGRKLAPERVREIAKGRVWTGAQAKQLGLVDETGGFYAAVAKAKKLAKIGD 520 Query: 246 IRKI--KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 K+ ++ K+ + K + S+ + + + Sbjct: 521 DVKVKLVNYPNNKSPFAMFGKGVEASAKGFEALSFLGWAAGDP 563 Score = 78.9 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 94/265 (35%), Gaps = 28/265 (10%) Query: 8 IKTRYVMLSLV--TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51 + +V+ + L + + +S S + +R + D Sbjct: 11 VFAAFVLFFVGVPFLLITMVAAASKPTTPSAITLVVDLREGLTDQTRSDPFAFITGRPLS 70 Query: 52 --ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 +++ + + D ++++ L G A + I A++ V+++ + + Sbjct: 71 TMDIVTSLYHAADDSKVKSVLIRLPEGGLMPAAAQEIRTAVRYVRSKNKPVYAHSQGLYP 130 Query: 110 AG-----YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 + Y + A+ S G+ + ++K DK G++ + + K Sbjct: 131 STMVLASYTVGTAATEFWMQPRSSFQVTGIATEEMFLKRAFDKYGITPQFQQRYEYKNAV 190 Query: 165 SPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK---TLVLSDGRIWTGAEAK 219 +P+ S+ P + + S Y + + R + + ++ +AK Sbjct: 191 NPYLQSDFTPAHREATLSWMGSVYDSLINDAAIDRKDAKLDAGKLKSILEAGPYSAEQAK 250 Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQ 244 ++GLI +G +E+ ++ A G Sbjct: 251 ELGLITNLGQVQEIEEAAKAKGGAD 275 >gi|255067016|ref|ZP_05318871.1| signal peptide peptidase SppA, 36K type [Neisseria sicca ATCC 29256] gi|255048841|gb|EET44305.1| signal peptide peptidase SppA, 36K type [Neisseria sicca ATCC 29256] Length = 329 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 64/279 (22%), Positives = 125/279 (44%), Gaps = 20/279 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV----EDNSPHVARIAIRGQIEDS-QELIERIE-- 58 + + + ++ ++ + S + + H A I ++G+I + + +E + Sbjct: 45 RIWRNIWRVIGVILFLMFIASLFGDDTDAVQSSGEHTAVIDLKGEIGNELDDQVEMLRTG 104 Query: 59 --RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYL 113 + + +A A+I+ +SPGGS F I+++ PV +M AS Y Sbjct: 105 MEAVYNNPNAKAIIIRANSPGGSPVVSNIAFNEIRRMKSEHKDIPVYVVAEDMCASGCYY 164 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 I+ A++ I A +S+VGSIGV+ +DK+G+ + + K PFS P Sbjct: 165 IAAAADKIYADPSSVVGSIGVIGGGFDATGLMDKIGIKRRLKIAGSNKGMGDPFSPETPA 224 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQE 231 Q+ + ++ + F++ V R + GRI+TG+EAK+VGLID G Sbjct: 225 QTQIWEKMLTDIHKEFIKSVKLGRGKRLKDQQYSDVFSGRIYTGSEAKEVGLIDDFGSVY 284 Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270 V + + + ++ ++ P +++ ++LS Sbjct: 285 SVARDVVK------VPELVNYTPEEDFGKILGRHLSAEM 317 >gi|325003037|ref|ZP_08124149.1| serine protease [Pseudonocardia sp. P1] Length = 298 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 61/272 (22%), Positives = 115/272 (42%), Gaps = 13/272 (4%) Query: 31 VEDNSPHVARIAIRGQIE-----------DSQELIERIERISRDDSATALIVSLSSPGGS 79 +P V+ + + G I ++ + + +ER D A+ + ++SPGGS Sbjct: 23 GAAGAPVVSVVRLHGVISAQAAPVPRQVLNAASVEKVLERAFAPDRLAAVALVINSPGGS 82 Query: 80 AYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 + I I+ + + PV+ ++AAS GY ++CA++ I A TS+VGSIGV+ Sbjct: 83 PTQSQLIGDRIRSLAAEAEVPVLAFCEDVAASGGYWLACAADEIYACSTSIVGSIGVVSA 142 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + +DK GVS + + K+ PF + V + + + + F V E R Sbjct: 143 GFGLDGLIDKWGVSRRLHTAGGSKSRLDPFLPEKAEDVAWLTGLQEQLHERFTGWVRERR 202 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 L DG +W G ++++GL+D +G +V + + + + + Sbjct: 203 GDRLAGDTELFDGEVWLGERSRELGLVDGIGTVHDVLDERFPDAEQRPVEQRRPLLARLG 262 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + S + L+ + + WA Sbjct: 263 AGGGAARAHSFGDPADVAFELLSAVETKATWA 294 >gi|134045563|ref|YP_001097049.1| signal peptide peptidase SppA, 36K type [Methanococcus maripaludis C5] gi|132663188|gb|ABO34834.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Methanococcus maripaludis C5] Length = 307 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 72/254 (28%), Positives = 134/254 (52%), Gaps = 15/254 (5%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--------------QELIERIE 58 V L ++ V + +S ++A I + G I + IE I+ Sbjct: 11 VFLIIILFLVGFILLIPVDGISSKNMAMINLDGTISSQTSESGFFSEFEPSVDDYIEWID 70 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 +D + A+I+ ++SPGG A E + R I++ K VI + M SA Y + ++ Sbjct: 71 DAEKDSNIKAIIIKINSPGGEVIASEKLSRKIKEASEEKVVIAYIETMGTSAAYQAASST 130 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + IVA +LVG+IGV + + ++KLGV+ ++KS K SP + + +M+ Sbjct: 131 DYIVAERQALVGNIGVRMEIIHYYGLMEKLGVNATTIKSGIYKDIGSPTRPMTEEEQRML 190 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 + +VD SY+ FV V+E+RN+ ++TL ++DG+I++G +AK+VGL+D+ G +E+ + Sbjct: 191 ESIVDESYYEFVSWVAENRNMTINETLRVADGKIYSGVQAKRVGLVDMTGTEEDAIEVAA 250 Query: 239 ALGVDQSIRKIKDW 252 + + ++ ++ Sbjct: 251 KMANLSN-PEVYEY 263 >gi|320538294|ref|ZP_08038179.1| signal peptide peptidase SppA [Treponema phagedenis F0421] gi|320144870|gb|EFW36601.1| signal peptide peptidase SppA [Treponema phagedenis F0421] Length = 603 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 63/280 (22%), Positives = 123/280 (43%), Gaps = 18/280 (6%) Query: 10 TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED----------SQELIERIER 59 T + + ++L F +S +++ + I ++G I S +++ + Sbjct: 293 TFFENKNFISLDDYNFYYSHS--ESTNKIGIIYLKGAISSYGTRQNDAVTSGYMLDLFDL 350 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK--VKNRKPVITEVHEMAASAGYLISCA 117 D A+++ + S GG +A E I RA+++ V+ +KPV+ + +AAS Y I+ + Sbjct: 351 AVNDPDVKAIVLRIDSGGGEVFASEEIRRAVERCIVRAKKPVVVSMGAVAASGAYWIASS 410 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 ++ I A+ ++ GSIGVL P + L LG+++ V + ++ Sbjct: 411 ADYIFASPYTITGSIGVLAVMPTFEAALQKYLGITVDGVYLHKFRPYTG-VKNMSETDKS 469 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 ++Q + S Y F+ VS R + +DK ++ G++++GA AK +GL+D +G + Sbjct: 470 LLQFEIMSIYKNFITKVSTGRKLSFDKVSDIAGGKVYSGATAKNLGLVDELGNLSDAIAY 529 Query: 237 LYALGVDQSI--RKIKDWNPPKNYWFCDLKNLSISSLLED 274 L + IK K L + Sbjct: 530 AAKLADCDGYSTKVIKRPLSYKEELLKYLMEAKAEMNISS 569 Score = 63.1 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 69/202 (34%), Gaps = 11/202 (5%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHE 105 I +I +++ + D + LS G S+ A+Q+ K + Sbjct: 85 IVSVSSIIRALKQAAYDRRIDCVFFDLSGLSGWSSGYFSDFAAALQEYKKSGKKLYVFSN 144 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE-- 163 + A Y ++ ++ I+ V G + + +K + V++ K+ Sbjct: 145 SYSLAKYYLASFADEIILDPLGSVDLSGFYNESLFFGGMEEKFDIHWNVVQAGAYKSMAE 204 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTG 215 E++ + + + + + +++ V+ +RN+P D +L Sbjct: 205 TYSQKEMSEGVKENHRALFTNIWENYIKEVATNRNLPTDVILHYVDNYLDLLKTHNGDPA 264 Query: 216 AEAKKVGLIDVVGGQEEVWQSL 237 A L+ + E+ L Sbjct: 265 ETALSAKLVTKIASYEDAEVDL 286 >gi|241758993|ref|ZP_04757105.1| protease [Neisseria flavescens SK114] gi|241320814|gb|EER57047.1| protease [Neisseria flavescens SK114] Length = 331 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 65/286 (22%), Positives = 118/286 (41%), Gaps = 16/286 (5%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDN------SPHVARIAIRGQIEDSQE-----LI 54 + + + ++++ + F + S H A I + G+I + + L Sbjct: 45 RIWRNIWRGIAVLIFLSLIFGLAEEEGKTTSIHARSEHTAVIDLTGEIGNDIDDQVQILR 104 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAG 111 + +E + +A A+I+ +SPGGS F ++++K I +M AS Sbjct: 105 DSMEAAYENGNAKAIIIRANSPGGSPVVSNTAFNEVRRLKAEHKDIPVYLVAEDMCASGC 164 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I A +S+VGSIGV+ +DK GV + + K PF+ Sbjct: 165 YYIAAAADKIYADPSSIVGSIGVIGGGFDFTGLMDKAGVKRRLKTAGSNKGMGDPFTPET 224 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGG 229 P Q+ + ++ + F++ V R + GRI+TG EAK+VGLID G Sbjct: 225 PAQTQIWETMLGDIHQEFIKAVKLGRGTRLKDKQYPDVFSGRIYTGKEAKQVGLIDDFGS 284 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 V + + + D++ + F + L + Sbjct: 285 IYSVARDVVKAPELVNYTPQDDFSKMLSRRFGAEVKAKVKETLSEI 330 >gi|297839273|ref|XP_002887518.1| hypothetical protein ARALYDRAFT_476539 [Arabidopsis lyrata subsp. lyrata] gi|297333359|gb|EFH63777.1| hypothetical protein ARALYDRAFT_476539 [Arabidopsis lyrata subsp. lyrata] Length = 676 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 115/264 (43%), Gaps = 16/264 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSL 73 W+ + +A I G I +++LIE+I + A I+ + Sbjct: 364 WTLGLSGGRDQIAIIRAGGSISRVKGPLSTPGSAIIAEQLIEKIRSVRESKKFKAAIIRI 423 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 SPGG A A + ++R I+ + KPVI + ++AAS GY ++ A+N IVA +L GSIG Sbjct: 424 DSPGGDALASDLMWREIKLLAETKPVIASMSDVAASGGYYMAMAANTIVAENLTLTGSIG 483 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-SEVNPKAVQMMQDVVDSSYHWFVRL 192 V+ + +K+G + +++ P+ ++ + +Y F Sbjct: 484 VVTARFTLAKLYEKIGFNKETISRGKYAELLGAEERPFKPEEAELFEKSAQHAYQLFRDK 543 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--K 250 + SR++P DK ++ GR+WTG +A GL+D +GG +K+ Sbjct: 544 AALSRSMPVDKMEEVAQGRVWTGRDAHSRGLVDALGGLSRAIAIAKQKANIPLNKKVTLV 603 Query: 251 DWNPPKNYWFCDLKNLSISSLLED 274 + + P L + S + D Sbjct: 604 ELSRPSTSLPDILSGIGSSVIGVD 627 Score = 89.3 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 95/286 (33%), Gaps = 17/286 (5%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDS 65 + + + V + +RGQI D +L E + + D Sbjct: 105 IFVVKLRMLFAYPWQRVRKGSVLTMTLRGQISDQLKSRFNSGLSLPQLSENFVKAAYDPR 164 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 + + + E + R I K I + + + CA N + A Sbjct: 165 IAGVYLHIDPLSCGWGKVEELRRHILDFKKSGKFIVGYISICGLKEFYLGCACNELYAPP 224 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVD 183 ++ G+ Q ++ +K+G+ + + K+ + ++ + +M+ ++D Sbjct: 225 SAYSFLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLSRKNISEENYEMLSVLLD 284 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 + Y ++ VS+S + + ++ + K+ GLI + +EV L Sbjct: 285 NIYANWLDGVSDSTGKKREDVENFINQGVYEIEKLKEEGLIKDIRYDDEVIAMLKERLGV 344 Query: 244 QSIRKIKDWNPPK----NYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 + +K+ + K W L + + + K Sbjct: 345 EKDKKLPTVDYKKYSGVKKWTLGLSGGRDQIAIIRAGGSISRVKGP 390 >gi|319638866|ref|ZP_07993624.1| protease [Neisseria mucosa C102] gi|317399770|gb|EFV80433.1| protease [Neisseria mucosa C102] Length = 331 Score = 117 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 68/285 (23%), Positives = 120/285 (42%), Gaps = 13/285 (4%) Query: 4 VLKKIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIEDSQE-----LIE 55 + + I +L ++L ++ V+ S H A I + G+I + + L + Sbjct: 46 IWRNIWRGVAVLIFLSLIFGLAEEEGKTTSVQARSEHTAVIDLTGEIGNDIDDQVQILRD 105 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGY 112 +E + +A A+I+ +SPGGS F ++++K I +M AS Y Sbjct: 106 SMEAAYENGNAKAIIIRANSPGGSPVVSNTAFNEVRRLKAEHKDIPVYLVAEDMCASGCY 165 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 I+ A++ I A +S+VGSIGV+ +DK GV + + K PF+ P Sbjct: 166 YIAAAADKIYADPSSIVGSIGVIGGGFDFTGLMDKAGVKRRLKTAGSNKGMGDPFTPETP 225 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 Q+ + ++ + F++ V R + GRI+TG EAK+VGLID G Sbjct: 226 AQTQIWESMLGDIHQEFIKAVKLGRGARLKDKQYPDVFSGRIYTGKEAKQVGLIDDFGSI 285 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 V + + + D++ + F + L + Sbjct: 286 YSVARDVVKAPELVNYTPQDDFSKMLSRRFGAEVKAKVKETLSEI 330 >gi|328957466|ref|YP_004374852.1| putative signal peptide peptidase SppA [Carnobacterium sp. 17-4] gi|328673790|gb|AEB29836.1| putative signal peptide peptidase SppA [Carnobacterium sp. 17-4] Length = 345 Score = 117 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 66/256 (25%), Positives = 125/256 (48%), Gaps = 16/256 (6%) Query: 14 MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE-------------LIERIERI 60 +L + TV+ S + + + +++ G I D Q ++++E++ Sbjct: 43 LLGFLGTTVLEESLLEAGDTSK-RIVLLSVDGTILDGQTSGFTGDSVYDHDLFLQQLEQV 101 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCAS 118 DD+ A+++S+++PGG Y I + +++ KP+ + MAAS GY IS ++ Sbjct: 102 LVDDTIKAIVLSVNTPGGGTYESAQIKDKLVEIQETTEKPIYVSMGSMAASGGYYISASA 161 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 I A+E +L GSIGV+ +K+GV ++KS K S + + +++ Sbjct: 162 EKIFASEETLTGSIGVIMSGTNFSELFEKIGVDDTTIKSGEFKDIGSSTRTMTEEDAEIL 221 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 Q +V++SY FV ++ E R + ++DGRI+ GA+A GL+D +G QE+ +++ Sbjct: 222 QTMVNTSYDRFVDVIVEGRGMDEAVVRTIADGRIYDGAQAVSNGLVDEIGYQEDALEAIK 281 Query: 239 ALGVDQSIRKIKDWNP 254 + P Sbjct: 282 KDYDLEDAEIFTYQGP 297 >gi|56964512|ref|YP_176243.1| signal peptidase SppA [Bacillus clausii KSM-K16] gi|56910755|dbj|BAD65282.1| signal peptidase SppA [Bacillus clausii KSM-K16] Length = 328 Score = 117 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 17/244 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSP 76 D S +A + + G I ++ ++ + + +I+++ SP Sbjct: 48 QEGDPSGSIALLEVNGAIINTTSDSLFSAEGYNHSNFMDLFYQTMSSPNVEGIIIAVDSP 107 Query: 77 GGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG I A+ + + KPV + MAAS GY ++ + I A +L GSIGV Sbjct: 108 GGGVLESAEIHDAVIEAQENYGKPVYISMGSMAASGGYYLAAPAEQIFAYPQTLTGSIGV 167 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + + LDK+GV KS P K S + +++Q +VD Y FV +++ Sbjct: 168 IMSSLNITELLDKIGVEETVYKSGPYKDMMSGTRPPTEEEDEILQSIVDEYYDEFVEVIA 227 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 R + ++ L DGRI+TG +A + GLID +G +V ++ S ++ P Sbjct: 228 NGRGMDEERVRELGDGRIYTGRQALEAGLIDELGSINDVIAAMQRDLG--SNYQVIAIEP 285 Query: 255 PKNY 258 + Sbjct: 286 KQGL 289 >gi|289642492|ref|ZP_06474636.1| signal peptide peptidase SppA, 36K type [Frankia symbiont of Datisca glomerata] gi|289507666|gb|EFD28621.1| signal peptide peptidase SppA, 36K type [Frankia symbiont of Datisca glomerata] Length = 689 Score = 117 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 63/249 (25%), Positives = 108/249 (43%), Gaps = 3/249 (1%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 +RG S L RD+ A + + SPGGS A + I R +++ + + Sbjct: 377 PLRGPAMTSDALTAAFRAAGRDEDVAAAVFRVDSPGGSYVASDLIRREVERFQATGRPVV 436 Query: 102 -EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160 + +AAS GY ++ ++ IVA +L GSIGV V+ LDK+GV +V Sbjct: 437 VSMGSVAASGGYFVALGADAIVAHPGTLTGSIGVFGGKQVVRELLDKIGVRFGAVAEGEN 496 Query: 161 KAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKK 220 SP E +P + + + +D Y FV V+ R + + ++ GR+WTGA+A + Sbjct: 497 ALMTSPRREFSPAERKKLDEFLDRVYEDFVTKVAAGRKMTPEAVHEVARGRVWTGADAHE 556 Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 GL+DV+ G + + + + + PK L+ S + + Sbjct: 557 RGLVDVLVGLSQACELAWEKAGLPTSVTPRLRVLPKLALADRLRPPRSSE--DPAAAGVG 614 Query: 281 QTKVQGLWA 289 + G + Sbjct: 615 GVPLAGPLS 623 Score = 81.2 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 80/192 (41%), Gaps = 7/192 (3%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + +++ + R DD A LI ++ G + I A+ + + Sbjct: 53 SLRTVVDGLRRAREDDRAATLIARIAPCGTPLARVQEIRDAVIAFREAGGTAFAYADAFG 112 Query: 109 SA-----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 Y ++CA + I A +G GV + P+++ LD+LG+ I+ + K Sbjct: 113 EFGGGTVPYYLACAFDQIWLAPPGELGLTGVALETPFLRDALDRLGIEIQVGQRHEYKNA 172 Query: 164 PSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221 + F + + + +V SS V ++ +R + + L D + +A++ Sbjct: 173 VNTFVERDFTAAHREASERIVVSSLSMIVDGIATARGLSPARVRELIDNAPLSAEQARRG 232 Query: 222 GLIDVVGGQEEV 233 GL+D +G ++EV Sbjct: 233 GLVDRLGYRDEV 244 >gi|310778441|ref|YP_003966774.1| signal peptide peptidase SppA, 67K type [Ilyobacter polytropus DSM 2926] gi|309747764|gb|ADO82426.1| signal peptide peptidase SppA, 67K type [Ilyobacter polytropus DSM 2926] Length = 578 Score = 117 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 108/244 (44%), Gaps = 16/244 (6%) Query: 32 EDNSPHVARIAIRGQIEDS------------QELIERIERISRDDSATALIVSLSSPGGS 79 + + +A I G+I S +I + RD + +++ + SPGGS Sbjct: 295 QSSGKKIAVIYGDGEILYSNSGRGAQQSITPDTIISELNMAVRDKNVVGIVLRIDSPGGS 354 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A A E I I+ + KPV + +AS GY IS + + I A ++ GSIGV+ P Sbjct: 355 ALASEVINAKIRSI--EKPVYVSMGGTSASGGYYISASGDRIFAERDTITGSIGVVSLVP 412 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 V KLG+ I+SV+ + S + + + + Y F VS RNI Sbjct: 413 DVSELAGKLGIKIESVQKGKLSGIYSITDGMTKGERERIYESSSKIYSEFKERVSSGRNI 472 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR--KIKDWNPPKN 257 P + L+ GR+W G EA + GL+D +GG ++ + + +I+ NP + Sbjct: 473 PMSQMESLAGGRVWLGEEALEKGLVDGIGGLQDTIKIMAKDLQLSEYNVVEIRRENPFEK 532 Query: 258 YWFC 261 + Sbjct: 533 LFMN 536 Score = 70.8 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 102/267 (38%), Gaps = 29/267 (10%) Query: 1 MEFVLKKIKTRYV----MLSLVTLTVVYFSWSSHVEDN------------------SPHV 38 + F++K+I + + ++ ++ + + F + VE + Sbjct: 11 LLFIMKEIASFLIKIVMVMVILIILLTVFVPKTPVEKAPIRKNTYIELDLSNPVGERGSL 70 Query: 39 ARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 + I G+ + ++ +++ D LI+ + S + E + R I++ + Sbjct: 71 SIFTIEGEKVNFYNMLNYLDKGKNDQRIDGLILKVDSVALNRAQVEELGRKIKEYREVGK 130 Query: 99 VITEVHEMAASAGYLISCASNIIVA--AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 + + Y ++ ++ I+ + + G + PY+K DK+G+ + Sbjct: 131 KVYAFSRGFQNRNYSLAVNADEIIMPPSRGAGSNISGYFMELPYMKRLSDKIGIKYDVIH 190 Query: 157 SSPMKAE--PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIW 213 K+ E++P+ + + ++D Y+ FV+ VS SRNI + +G Sbjct: 191 VGDYKSYGENYVREEMSPEFRENITRLLDRIYYNFVQDVSVSRNIDERTLSRKILNGDFV 250 Query: 214 TGA--EAKKVGLIDVVGGQEEVWQSLY 238 + K+ L+D + E + Sbjct: 251 LADAFKMKEEKLVDSLMYYHEFLKERK 277 >gi|170748571|ref|YP_001754831.1| peptidase S49 [Methylobacterium radiotolerans JCM 2831] gi|170655093|gb|ACB24148.1| peptidase S49 [Methylobacterium radiotolerans JCM 2831] Length = 285 Score = 117 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 65/217 (29%), Positives = 102/217 (47%), Gaps = 12/217 (5%) Query: 38 VARIAIRGQIEDSQELIE---------RIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 VA + + G I + +ER A+ + ++SPGGS I R Sbjct: 24 VAVVRLSGTIGAVSPIRPGLSIGSVAGSLERAFGMPGVKAVALVINSPGGSPAQSHLIHR 83 Query: 89 AIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 I+ + + K PVI V ++AAS GY+I+CA++ IVA TS+VGSIGV+ L+ Sbjct: 84 RIRALADEKGVPVIAFVEDVAASGGYMIACAADEIVADPTSIVGSIGVVSAGFGFHGLLE 143 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 KLGV + K+ PF +P V+ ++ + F LV+ R + Sbjct: 144 KLGVERRVHTQGEAKSMLDPFRPEDPADVERLKRIQADVQDLFTGLVTARR-PTLSRAEN 202 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 L G +WTG +A +GL+D +G ++ + VD Sbjct: 203 LFTGAVWTGRQALPLGLVDALGDVRTAMRARFGDKVD 239 >gi|261379532|ref|ZP_05984105.1| signal peptide peptidase SppA [Neisseria subflava NJ9703] gi|284797999|gb|EFC53346.1| signal peptide peptidase SppA [Neisseria subflava NJ9703] Length = 331 Score = 117 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 67/285 (23%), Positives = 120/285 (42%), Gaps = 13/285 (4%) Query: 4 VLKKIKTRYVMLSLVTLTVVYF---SWSSHVEDNSPHVARIAIRGQIEDSQE-----LIE 55 + + I +L ++L ++ ++ S H A I + G+I + + L + Sbjct: 46 IWRNIWRGVAVLIFLSLIFGLAEEEGKTTSIQARSEHTAVIDLTGEIGNDIDDQVQILRD 105 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGY 112 +E + +A A+I+ +SPGGS F ++++K I +M AS Y Sbjct: 106 SMEAAYENGNAKAIIIRANSPGGSPVVSNTAFNEVRRLKAEHKDIPVYLVAEDMCASGCY 165 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 I+ A++ I A +S+VGSIGV+ +DK GV + + K PF+ P Sbjct: 166 YIAAAADKIYADPSSIVGSIGVIGGGFDFTGLMDKAGVKRRLKTAGSNKGMGDPFTPETP 225 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 Q+ + ++ + F++ V R + GRI+TG EAK+VGLID G Sbjct: 226 AQTQIWETMLGDIHQEFIKAVKLGRGARLKDKQYPDIFSGRIYTGKEAKQVGLIDDFGSI 285 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 V + + + D++ + F + L + Sbjct: 286 YSVARDVVKAPELVNYTPQDDFSKMLSRRFGAEVKAKVKETLSEI 330 >gi|57641099|ref|YP_183577.1| endopeptidase IV [Thermococcus kodakarensis KOD1] gi|57159423|dbj|BAD85353.1| predicted endopeptidase IV, S49 family [Thermococcus kodakarensis KOD1] Length = 334 Score = 117 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 106/232 (45%), Gaps = 3/232 (1%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGS 79 + + +A + I G I+D ++I + ++ ++S +++ + SPGG Sbjct: 73 IAFLQRLVSSNQGGTTIAVVPIFGIIDDYTALQVIPLLRNLAMNESVGGVLLWIESPGGV 132 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 I I+K+ KPV+ ++ AS GY I+ + IVA+ + VGSIGV++ + Sbjct: 133 VGPVINIHSEIKKLSLVKPVVAYSGDIIASGGYYIAVGAQKIVASPLAEVGSIGVIYVHY 192 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 ++ + G+ + K+ K + + ++ P+ + + ++V++ + F+ VSE RN+ Sbjct: 193 DLEKNYEMNGIKVNVFKTGKHKDMGAEWRDLTPEEREKITEMVNTYFQAFISAVSEGRNM 252 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 D+ S G W L+D +GG + L L + + Sbjct: 253 TIDEVKNFSTGETWFAENVTGA-LVDELGGMDTAIDVLEKLMNVSGAKVVVY 303 >gi|299535443|ref|ZP_07048765.1| putative signal peptide peptidase sppA [Lysinibacillus fusiformis ZC1] gi|298729204|gb|EFI69757.1| putative signal peptide peptidase sppA [Lysinibacillus fusiformis ZC1] Length = 337 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 73/293 (24%), Positives = 130/293 (44%), Gaps = 23/293 (7%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDN-------SPHVARIAIRGQIED-------- 49 + I + L + S V +N +A + + G I+D Sbjct: 22 INTIFALFKADFLGNFDSLMAGNSLDVYENVIEGENFDKRIAYLKVDGTIQDIGSSTLWQ 81 Query: 50 -----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV--ITE 102 Q +E+++ I D+S +++S++SPGG I++ + K+K + + Sbjct: 82 PVAYDHQFFLEQLDNILYDESIQGVVLSVNSPGGGVKESADIYKKLLKIKEERQIPIYVS 141 Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 + MAAS GY IS ++ I A ++ GSIGV+ Q + +K+GV ++ KS K Sbjct: 142 MDSMAASGGYYISAPADKIFAHRDTITGSIGVIMQSINYQELAEKVGVKFETFKSGEHKD 201 Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVG 222 SP EV + MMQD+++ +Y FV +V + RN+ + ++DGRI G +A + G Sbjct: 202 MLSPMREVTAEERAMMQDMINETYEEFVDIVEQGRNMSEAEVKKVADGRILGGTKALEAG 261 Query: 223 LIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 LID +G +E +L + + +++ W + S Sbjct: 262 LIDEIGDEEAAIAALREDYGLEDAA-LFEYSYDMGGWQSYVGMKIGSMFGPSA 313 >gi|296282880|ref|ZP_06860878.1| periplasmic serine protease [Citromicrobium bathyomarinum JL354] Length = 628 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 115/256 (44%), Gaps = 9/256 (3%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------ELIERIERISRDDSATALIVSL 73 + + +D+ + + I G+I D + I + + +D L+V + Sbjct: 298 LATWLADKPFDDSGDAIGVVTIAGEIVDGDAGPGTAGGDRIADLLDDALNDDLKGLVVRV 357 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVI-TEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 SPGGS A EAI AI + K + + + +AAS GY +S ++ I A ++ GSI Sbjct: 358 DSPGGSVLASEAIREAILRHKAKGIPVAVSMANVAASGGYWVSTPADRIFAEPETITGSI 417 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 G+ P + K+GVS V ++P+ +P NP+ Q++Q +++ Y F+ + Sbjct: 418 GIFAVLPTFEKLASKVGVSADGVSTTPLSGQPDFVGGFNPETEQILQASIENGYDRFLGI 477 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 V++SR + + GR+W G A++ GL+D G ++ + + + Sbjct: 478 VAKSRGKTPAQIDAIGQGRVWDGGTARQNGLVDQFGDLDDALAWVAGKAGLEDDAYHARF 537 Query: 253 NPPKNYWFCDLKNLSI 268 ++ + L + Sbjct: 538 LGSESSEYQTLLRQLV 553 Score = 76.6 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 76/208 (36%), Gaps = 9/208 (4%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 D Q+L+ ++ + DD A+++ + + G A + A+ +V+ + Sbjct: 80 DVQDLVHALDTAAEDDRVKAVVLDMRTFLGAGAVHLREMGAALDRVRAADKPVLAYGMAY 139 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 + G ++ ++ + G + Y LDKLGV+ + K K+ P+ Sbjct: 140 SDDGLRLAAHASEVWLDPLGGAMIAGPGGKRLYYGDLLDKLGVNARVFKVGTYKSAVEPY 199 Query: 168 --SEVNPKAVQMMQDVVDSSYHWFVRLVSESR-NIPYDKTLVLSDGRIWT-----GAEAK 219 + ++ A + +++ + + V ++R I ++ + + A Sbjct: 200 LGNSMSEPARENARELYGELWSEWQASVKKARPKIDIERVAQTPAEWVASANGDIAKAAV 259 Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIR 247 G++D +G + + Sbjct: 260 AAGMVDKLGSWTAFGDRVAEIAGKDKSD 287 >gi|225077079|ref|ZP_03720278.1| hypothetical protein NEIFLAOT_02132 [Neisseria flavescens NRL30031/H210] gi|224951636|gb|EEG32845.1| hypothetical protein NEIFLAOT_02132 [Neisseria flavescens NRL30031/H210] Length = 331 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 65/286 (22%), Positives = 118/286 (41%), Gaps = 16/286 (5%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDN------SPHVARIAIRGQIEDSQE-----LI 54 + + + ++++ + F + S H A I + G+I + + L Sbjct: 45 RIWRNIWRGVAVLIFLSLIFGLAEEEGKTTSIHARSEHTAVIDLTGEIGNDIDDQVQILR 104 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI---TEVHEMAASAG 111 + +E + +A A+I+ +SPGGS F ++++K I +M AS Sbjct: 105 DSMEAAYENGNAKAIIIRANSPGGSPVVSNTAFNEVRRLKAEHKNIPVYLVAEDMCASGC 164 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I A +S+VGSIGV+ +DK GV + + K PF+ Sbjct: 165 YYIAAAADKIYADPSSIVGSIGVIGGGFDFTGLMDKAGVKRRLKTAGSNKGMGDPFTPET 224 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGG 229 P Q+ + ++ + F++ V R + GRI+TG EAK+VGLID G Sbjct: 225 PAQTQIWETMLGDIHQEFIKAVKLGRGARLKDKQYPDVFSGRIYTGKEAKQVGLIDDFGS 284 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 V + + + D++ + F + L + Sbjct: 285 IYSVARDVVKAPELVNYTPQDDFSKMLSRRFGAEVKAKVKETLSEI 330 >gi|114705272|ref|ZP_01438180.1| Clp protease:Peptidase U7:Na+/H+ antiporter NhaA [Fulvimarina pelagi HTCC2506] gi|114540057|gb|EAU43177.1| Clp protease:Peptidase U7:Na+/H+ antiporter NhaA [Fulvimarina pelagi HTCC2506] Length = 298 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 109/249 (43%), Gaps = 18/249 (7%) Query: 38 VARIAIRGQIE-----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + + + G I + +E+ + A+ V ++SPGGS I Sbjct: 21 IPTVRLSGAIMATGGGIERQVLSMAGVAPMLEKAFSQKGSPAVAVIVNSPGGSPVQSRLI 80 Query: 87 FRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 ++ I+ + +K V+ V ++AAS GY+I+CA + I+A +S+VGSIGV+ Sbjct: 81 YKRIRDLAEDKKKRVLVFVEDVAASGGYMIACAGDEIIADPSSIVGSIGVVSGSFGFVEA 140 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + KLG+ + + K PF P+ V+ ++ + + F+ LV SR + Sbjct: 141 ISKLGIERRVHTAGKNKVTLDPFQPEKPEDVERLKALQLDVHDTFIDLVKASRKNKLAEN 200 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 L G W+G +A +GLID +G V + LY + + + P + Sbjct: 201 DDLFTGLFWSGRQALDLGLIDRLGDLHSVVRELYGEKAEPKL-----YTPKTGFLGRTKP 255 Query: 265 NLSISSLLE 273 + + +E Sbjct: 256 GVGVGVGIE 264 >gi|148655954|ref|YP_001276159.1| signal peptide peptidase SppA, 36K type [Roseiflexus sp. RS-1] gi|148568064|gb|ABQ90209.1| signal peptide peptidase SppA, 36K type [Roseiflexus sp. RS-1] Length = 571 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 63/208 (30%), Positives = 109/208 (52%), Gaps = 2/208 (0%) Query: 41 IAIRGQ-IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV 99 I + G+ I S+ +I+ + + R+ A+++ ++SPGGSA+ + I+R ++++ RKPV Sbjct: 310 IPLIGELIAGSESIIQALRQAERNPRLAAVLLYINSPGGSAFDSDLIWREVRRLDRRKPV 369 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 + + ++AAS GY ++ + I+A ++ GSIGVL P ++ L + GV+ ++ Sbjct: 370 VAVMGDVAASGGYYVASGARTILAQPGAVTGSIGVLIIRPVIEGLLKRAGVNTVAIGRGA 429 Query: 160 MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAK 219 A + ++ ++D SY F + VS RNIP L+ GR+W+G EA Sbjct: 430 NSAFFVSDAP-AEAERSAVRALIDDSYALFKQRVSTGRNIPEPALEPLAGGRVWSGREAY 488 Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIR 247 + GLID GG E L R Sbjct: 489 EYGLIDASGGVPEALLKAQELAGLPRDR 516 Score = 94.7 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 97/221 (43%), Gaps = 6/221 (2%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 L R+E ++ D +++ +++ E++ + I++ + R + + Sbjct: 63 SNLRHRLEWLASDPQVRGIVLDINTLTCGWATIESLHQEIRRFRERGKRVVARLTNPDTK 122 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FS 168 Y+ +CA+++IVA +L+ G+ ++K L K+ +S++ SP K P Sbjct: 123 TYVAACAADLIVAPPAALLNVTGLYTGVRFLKDALAKVDLSVEVTAVSPYKTAGDPLARP 182 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 +++P+ + ++ ++D Y V ++ +R D+ L D W+ A++ GLID V Sbjct: 183 DMSPENREQIERLLDLRYAAIVETIATARRKTPDEVRALIDTAPWSAQRAQEAGLIDAVL 242 Query: 229 GQEEVWQSLYALGVDQS----IRKIKDWNPPKNYWFCDLKN 265 ++E+ L + +I +W + + Sbjct: 243 YEDELPAFLASQAGKDGGAGSEPQIVEWAQARRALRLPMLR 283 >gi|148553446|ref|YP_001261028.1| signal peptide peptidase SppA, 67K type [Sphingomonas wittichii RW1] gi|148498636|gb|ABQ66890.1| signal peptide peptidase SppA, 67K type [Sphingomonas wittichii RW1] Length = 626 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 70/262 (26%), Positives = 122/262 (46%), Gaps = 11/262 (4%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSA 66 + + ++ + + + + + G I D + + + Sbjct: 291 GFKAIPLDRWASAHPEKSGGTPIGVLTVAGDIVDGDAPPGAAGGTTISDLLLDELGRKRT 350 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAE 125 AL+V + SPGGS E I AI + K PV+ + +AAS GY IS ++ I+A Sbjct: 351 KALVVRVDSPGGSVTGAETIRSAILQAKGLGLPVVVSMGGLAASGGYWISTPADRIIADP 410 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 ++ GSIGV P + L KLG+S VK++P+ EP F +P+ MMQ ++ Sbjct: 411 ATITGSIGVFGILPTFQGSLAKLGLSADGVKTTPLSGEPDVFRGTSPQFDAMMQGSIEDV 470 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y F LV++SR +P ++ +++GR+W GA A+++GL+D G ++ L Sbjct: 471 YRRFTGLVAQSRKLPIERVREIAEGRVWAGATARQIGLVDGFGSVDDAIAEAAKLAKLDP 530 Query: 246 IR-KIKDWNPPKNYWFCDLKNL 266 + + P N W +++L Sbjct: 531 AKVRPLYIEKPLNPWKEMIRSL 552 Score = 73.5 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 87/269 (32%), Gaps = 31/269 (11%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------- 50 +K ML + S + S I + G + + Sbjct: 14 IKDGLVLIAMLIFFGTLFLALSIKPNSTLPSSGALVIDLDGTLVEQPAETDPLTLLAGNG 73 Query: 51 --------QELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKNRKPVIT 101 ++L ++ + + A+++ L S G A RA+ K + I Sbjct: 74 GIARETRLRDLERALQAAAESNGVKAIVLDLDSFAGGEQATIAAAGRALDKARAAGKPIL 133 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 GY ++ + + V G Y K +D+LG++ K + K Sbjct: 134 AYATGYGDDGYQLASHATEVWLNPLGGVILTGPGGSRLYYKGLMDRLGITAKIYRVGAFK 193 Query: 162 AEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESR-NIPYDKTLV-----LSDGRIW 213 + P+ + +P+A + Q + ++ + + V ++R + + + Sbjct: 194 SAVEPYMRSDQSPEAREANQALANALWSTWTAEVGKARPKAKLAAYVERPTAIIGEAGGR 253 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 A GL+D +G + + A+ Sbjct: 254 MSQAALNAGLVDRLGDRNAFDSRVAAIAG 282 >gi|326789880|ref|YP_004307701.1| signal peptide peptidase SppA, 36K type [Clostridium lentocellum DSM 5427] gi|326540644|gb|ADZ82503.1| signal peptide peptidase SppA, 36K type [Clostridium lentocellum DSM 5427] Length = 315 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 62/271 (22%), Positives = 123/271 (45%), Gaps = 11/271 (4%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVS 72 + S + + I ++G I + + I RI + D + + Sbjct: 32 AVISGLTGTESKMPRVGNVIDTIYVQGTIAEGEMNYNHAWTINRINELMYDKQNKGIFLY 91 Query: 73 LSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 ++SPGG Y + ++ +++ K +PV + + AAS G + A++ I A ++ G Sbjct: 92 VNSPGGGIYESDELYLKLKEYKEVTERPVYAYMAQTAASGGLYVCMAADKIYANRMTMTG 151 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ + LG+ +++ S KA + + + Q++Q ++D SY+ FV Sbjct: 152 SIGVIMSMTDTTGLQELLGIKTENIVSGENKA---MGNPLTDEQRQILQTMIDESYNIFV 208 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 +V+E+R++ K L+DGR+++ +AK +GLID VG E+ ++ + +S Sbjct: 209 DVVAENRSLTEAKVKELADGRVYSALQAKDLGLIDEVGSVEDAMHAMMSENQLESCGWYS 268 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 + P L + S L +++ Sbjct: 269 EDAPTVGLLDMLLGAKTESKDLLSQFSEIQK 299 >gi|153007859|ref|YP_001369074.1| peptidase S49 [Ochrobactrum anthropi ATCC 49188] gi|151559747|gb|ABS13245.1| peptidase S49 [Ochrobactrum anthropi ATCC 49188] Length = 290 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 62/265 (23%), Positives = 107/265 (40%), Gaps = 18/265 (6%) Query: 38 VARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + + + G I +E+ D A+ +SL+SPGGS I+ Sbjct: 20 IPVVRLHGAIMSGGSAFRPMLSLASTAAVLEKAFTDKETPAVAISLNSPGGSPVQSRLIY 79 Query: 88 RAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 R I+ + K V V ++AAS GY+I+ A + I+A +S+VGSIGV+ L Sbjct: 80 RRIRDLAAEHQKKVFIFVEDVAASGGYMIALAGDEIIADPSSIVGSIGVVSASFGFPELL 139 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV + + K PF ++ ++ + + F+ +V E R + Sbjct: 140 KKIGVERRVYTAGSNKVTLDPFQPEKKTDIERLKSLQLEIHETFIDMVKERRGTKLAEDK 199 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L G WTG + ++GLID +G + Y K+K + + Sbjct: 200 DLFTGLFWTGIKGHELGLIDGLGDMRSFLRKTYG-----DKVKLKLVEQKRGLLGRKMPG 254 Query: 266 LSISSLLEDTIPLMKQTKVQGLWAV 290 + ++ L + GL +V Sbjct: 255 IDMA-LGNLEPASIAAHLGDGLLSV 278 >gi|42563213|ref|NP_565077.2| SPPA; serine-type endopeptidase [Arabidopsis thaliana] gi|12325146|gb|AAG52522.1|AC016662_16 putative protease IV; 48713-44371 [Arabidopsis thaliana] gi|332197414|gb|AEE35535.1| signal peptide peptidase [Arabidopsis thaliana] Length = 677 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 67/264 (25%), Positives = 116/264 (43%), Gaps = 16/264 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSL 73 W+ + +A I G I +++LIE+I + A I+ + Sbjct: 365 WTLGLTGGRDQIAIIRAGGSISRVKGPLSTPGSAIIAEQLIEKIRSVRESKKYKAAIIRI 424 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 SPGG A A + ++R I+ + KPVI + ++AAS GY ++ A+N IVA +L GSIG Sbjct: 425 DSPGGDALASDLMWREIKLLAETKPVIASMSDVAASGGYYMAMAANAIVAENLTLTGSIG 484 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-SEVNPKAVQMMQDVVDSSYHWFVRL 192 V+ + +K+G + +++ + P+ ++ + +Y F Sbjct: 485 VVTARFTLAKLYEKIGFNKETISRGKYAELLGAEERPLKPEEAELFEKSAQHAYQLFRDK 544 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--K 250 + SR++P DK ++ GR+WTG +A GLID VGG +K+ Sbjct: 545 AALSRSMPVDKMEEVAQGRVWTGKDAHSRGLIDAVGGLSRAIAIAKQKANIPLNKKVTLV 604 Query: 251 DWNPPKNYWFCDLKNLSISSLLED 274 + + P L + S + D Sbjct: 605 ELSRPSTSLPDILSGIGSSVIGVD 628 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 39/253 (15%), Positives = 88/253 (34%), Gaps = 13/253 (5%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDS 65 + + V + +RGQI D +L E + + D Sbjct: 106 IFVVKFRMLFAYPWQRVRKGSVLTMTLRGQISDQLKSRFNSGLSLPQLSENFVKAAYDPR 165 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 + + + E I R I K I + Y + CA N + A Sbjct: 166 IAGVYLHIDPLSCGWGKVEEIRRHILNFKKSGKFIVGYISICGLKEYYLGCACNELFAPP 225 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVD 183 ++ G+ Q ++ +K+G+ + + K+ + ++ + +M+ ++D Sbjct: 226 SAYSFLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLSRKSISEENYEMLSVLLD 285 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 + Y ++ VS++ + + ++ + K+ GLI + +EV L Sbjct: 286 NIYSNWLDGVSDATGKKREDVENFINQGVYEIEKLKEAGLIKDIRYDDEVITMLKERLGV 345 Query: 244 QSIRKIKDWNPPK 256 + +K+ + K Sbjct: 346 EKDKKLPTVDYKK 358 >gi|66816573|ref|XP_642296.1| hypothetical protein DDB_G0278333 [Dictyostelium discoideum AX4] gi|60470359|gb|EAL68339.1| hypothetical protein DDB_G0278333 [Dictyostelium discoideum AX4] Length = 649 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 64/257 (24%), Positives = 105/257 (40%), Gaps = 21/257 (8%) Query: 33 DNSPHVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSPGG 78 +A I G I S L+ I + D A+++ ++S GG Sbjct: 319 SQQGVIALINAEGTIHQGTSANKYNGGPSIGSDSLVLAIRSATLDKDVKAIVIRVNSGGG 378 Query: 79 SAYAGEAIFRAIQK-VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 S A + + I+ K K ++ + AS GY +C ++ IVA +L GSIGVL Sbjct: 379 SYIASDMVHHEIEASKKAGKKIVISMGTYCASGGYFFACNADKIVALGATLTGSIGVLTA 438 Query: 138 YPYVK-PFLDKLGVSIKSVKSSP-----MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 +K + +K+ V ++ +P S K + + +D Y F Sbjct: 439 KFNLKGMWEEKVHVKFDALHLNPDGATDNSTYFSSLHNYTEKQLAEVNSYMDFIYEDFTS 498 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 VS+ R + D+ ++ GR+WTGA+A K+ L+D +GG +E + L S + Sbjct: 499 KVSKGRRLTRDQVEEIARGRVWTGAQALKLSLVDKLGGLKEAIEVAKELVGIASNVQPHV 558 Query: 252 WNPPKNYWFCDLKNLSI 268 PK L S Sbjct: 559 VTYPKETVLSQLVASSA 575 Score = 79.7 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 104/284 (36%), Gaps = 19/284 (6%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIA--IRGQIEDSQELIERIERIS 61 ++K IK R + T++ +++ ++ + ++ I + I + L++ IE+ + Sbjct: 47 LIKLIKNR-----IRNNTILEIDFTNTIDTSDVDISPIEKLLDPNIISFRSLLDAIEKAA 101 Query: 62 RDDSATALIVSLSS-PGGSAYAGEAIFRAIQKVKNRKPVIT-----EVHEMAASAGYLIS 115 D LIV LS S + AI K++ + Y ++ Sbjct: 102 NDKRVIGLIVRLSGENQFSLANIQEFRNAISFFKSKGKRTVAFTDSFCEAGSGIGRYYMA 161 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPK 173 + + A + + I + + ++K L+KL + ++ K + Sbjct: 162 SIFHDVYMAPSGTLNLINTQYDFAFIKKTLEKLNIVPDTITRKEYKNALSGLVNEHLTEP 221 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 + M + S Y + +++ R++ ++ L + ++ +A L+D +EV Sbjct: 222 EKESMNAIFKSLYEQIIEDIAKDRSLTKERVNELFESGPFSSDKALVNKLVDSTLYGDEV 281 Query: 234 ----WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273 ++ L + ++ +N + S ++ Sbjct: 282 YTTTYEKLETTKKNSNLLYAHKYNAKTKPLYGKKFGRSQQGVIA 325 >gi|163732838|ref|ZP_02140283.1| peptidase, family S49, putative [Roseobacter litoralis Och 149] gi|161394198|gb|EDQ18522.1| peptidase, family S49, putative [Roseobacter litoralis Och 149] Length = 265 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 62/252 (24%), Positives = 116/252 (46%), Gaps = 11/252 (4%) Query: 33 DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + P +A I + G I + + L IE+ A+ + ++SPGGS Sbjct: 9 KSDPTIAVIRLAGVISAAGRGTLNDESLAPAIEKAFSRGKPAAVALEVNSPGGSPVQSSL 68 Query: 86 IFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I I+++ K PVI V ++AAS GY ++ A++ I + E+S+VGSIGV+ Sbjct: 69 IGARIRRLAEEKGIPVIAFVEDVAASGGYWLAAAADEIYSDESSVVGSIGVISASFGAHE 128 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L + G+ + + K+ PF NP+ V ++ +++ + F VS R+ + Sbjct: 129 LLARQGIERRVYTAGKSKSMLDPFRPENPEDVARLKGLLEDIHGNFKDHVSARRSGKLPE 188 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L G +W G A ++GLID +G + + + V ++ P + + + Sbjct: 189 DRDLFTGEVWLGRRAAELGLIDGIGHLKPMMIERFGDKVKFRSYGVR--KPLLSRFGSRI 246 Query: 264 KNLSISSLLEDT 275 + ++ S+ E + Sbjct: 247 LDDTLHSIEERS 258 >gi|297181012|gb|ADI17213.1| periplasmic serine proteases (clpp class) [uncultured delta proteobacterium HF0070_10I02] Length = 524 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 63/277 (22%), Positives = 127/277 (45%), Gaps = 16/277 (5%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALI 70 + V VA + + G + + S +++ IE ++ ++ A++ Sbjct: 217 LLAKLPMVRKKKAIVAVVHLDGPVVERREQMPRSGRVIASDDVVPVIEELTDNEQIKAVV 276 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 ++++SPGGSA A + I R++ +K +KPV+ + +AAS GY IS ++ I A + ++ G Sbjct: 277 LAVNSPGGSALASDLISRSVMALKEKKPVLASMGNVAASGGYYISAEAHEIWAHKATITG 336 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ + L KLGV + +P +P + +P+ + + + Y F+ Sbjct: 337 SIGVVGGKLVLGSALGKLGVHSSWMGPAPDPGLLAPHTRFHPEQRRRFRASLRRVYDRFI 396 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE---VWQSLYALGVDQSIR 247 +V+ R D+ ++ GR+WTG++A GL+D +G ++ +L ++ Sbjct: 397 SIVASGRGKTTDEIEPVAQGRVWTGSQAMDNGLVDSLGTLKDAVRAAAVRASLNPERIKT 456 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 ++PPK + L+ + + Sbjct: 457 IPVRFDPPKFGALSQFMRAGTHTPLDMAVGFAGADGL 493 Score = 62.3 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 67/184 (36%), Gaps = 2/184 (1%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 +++++ + IS+D L + + + I AI+ V +T + Sbjct: 7 EKMLDTLHIISKDPKIMGLHIEVRTLRFGWSQLYEIHAAIRSVAESGTRVTAYLTSGSDR 66 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE--PSPFS 168 L++ A++ I + V GV + L +LGV + K+ S Sbjct: 67 EILLASAAHHITMPPPAEVYLTGVAASVRFYGSALQRLGVEADLESAGAYKSFGEAYTRS 126 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 P+ + M ++ + ++ + + R++ + + A + GLID Sbjct: 127 APTPENREAMDHLLGDLHDNWLETLGQGRSMEVAQLDDALRSAPLSSENAVQRGLIDAAR 186 Query: 229 GQEE 232 +E Sbjct: 187 YADE 190 >gi|256374226|ref|YP_003097886.1| peptidase S49 [Actinosynnema mirum DSM 43827] gi|255918529|gb|ACU34040.1| peptidase S49 [Actinosynnema mirum DSM 43827] Length = 290 Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 62/271 (22%), Positives = 115/271 (42%), Gaps = 22/271 (8%) Query: 35 SPHVARIAIRGQIE------------DSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 P VA + + G I ++Q + + R + A+ + ++SPGG+ Sbjct: 22 GPVVAAVRLHGVITPNPGPVAARGSLNAQSVESALTRAFEHERLVAVALLVNSPGGAPTQ 81 Query: 83 GEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 I ++++ ++ PV+ ++AAS GY ++CA++ I A TSLVGSIGV+ Sbjct: 82 SALIADRVRELAAKRRVPVLAFCEDVAASGGYWLACAADEIHAHPTSLVGSIGVVSSGFG 141 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + +++ GV + + K PF + V ++ + + F V+E R Sbjct: 142 LTGLMERFGVERRVHSAGESKVRLDPFQPEKAEDVAWLEGLQSELHEQFKAWVTERRGRR 201 Query: 201 YD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 L G +WTGA+A ++GL+D +G V G +I P +N Sbjct: 202 LAADAPDLFAGEVWTGAKALELGLVDGLGTLRGVI------GKRYPDAEIAIAEPRRNLL 255 Query: 260 FCDLKNLSISSLLEDTI-PLMKQTKVQGLWA 289 + S+ D + + + + W+ Sbjct: 256 SRLGLGNAASTRSGDFVTQALASLEERARWS 286 >gi|323345102|ref|ZP_08085326.1| signal peptide peptidase SppA [Prevotella oralis ATCC 33269] gi|323094372|gb|EFZ36949.1| signal peptide peptidase SppA [Prevotella oralis ATCC 33269] Length = 589 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 60/274 (21%), Positives = 114/274 (41%), Gaps = 17/274 (6%) Query: 30 HVEDNSPHVARIAIRGQIED--------------SQELIERIERISRDDSATALIVSLSS 75 ++ +A +G I S + + +E++ DD A+++ ++S Sbjct: 294 PEKETGDEIAVYFAQGTIVQNAAAGLFSQSAQIVSTTVCKDLEQLMNDDDVKAVVIRVNS 353 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 GG AYA E I+ + K+K +KPV+ + + AAS Y +SC ++ IVA T+L GSIG+ Sbjct: 354 GGGDAYASEQIWHQVAKLKTKKPVVISMGDYAASGAYYMSCVADWIVAQPTTLTGSIGIF 413 Query: 136 FQYPYVKPFL-DKLGVSIKSVKSSPMKAE-PSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 P + KLGV VK++ +N + + V+ Y F + V Sbjct: 414 GVIPDYSGLVTQKLGVKFDEVKTNKNSGFGNILARPLNADEIGYLTAYVNRGYQLFRKRV 473 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 ++ R + + ++ G +W G +A L+D +GG L + ++ Sbjct: 474 ADGRRMSVPQVEKIAQGHVWLGQDALINRLVDQLGGLSTAVTKAAQLAKVKE-YHTTEYP 532 Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + + S L++ + + Sbjct: 533 AAPSILDQLFSSATRGSYLDEQLRTTLGDFYEPF 566 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 47/325 (14%), Positives = 105/325 (32%), Gaps = 40/325 (12%) Query: 1 MEFVLKKIKTRYVMLSLVTLTV----------VYFSWSSHVEDNSPHVARIAIRGQIEDS 50 M+ K + V L + ++ V + + SS + V + + G I++ Sbjct: 1 MKEFFKYVTATVVGLFVFSIVVTILCVMSLVGMVAADSSTKSVSENSVFVLNLAGTIQEQ 60 Query: 51 -------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 +++ I + +D + + S + I A+ Sbjct: 61 GENNVLGQLTGNTLNNLGLDQILSGIRKARDNDRIKGIYIEAGLLETSYATLQEIRNALL 120 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 K I + Y +S ++ I ++ G+ Q ++K K G+ Sbjct: 121 DFKKHGKWIVTYADTYTQGTYYVSSVADKIFINPQGMLDWHGLSAQPMFIKDVAAKFGIR 180 Query: 152 IKSVKSSPMK--AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + VK K E ++ + + +D ++ + V++SR + D +D Sbjct: 181 YQVVKVGAYKSATEYYTEERMSDANRRQVTAFIDGTWRNVCKEVAQSRKVSVDSLNAYAD 240 Query: 210 G-RIWTGAE-AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN-------PPKNYWF 260 I+ G E KK L+D + + V + + I + P K Sbjct: 241 RLLIFEGTENLKKYKLVDGLIYADNVKTEVKKMLKIDDDDAIAQLSLADMANVPEKETGD 300 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQ 285 + +++++ + Q Sbjct: 301 EIAVYFAQGTIVQNAAAGLFSQSAQ 325 >gi|302782103|ref|XP_002972825.1| hypothetical protein SELMODRAFT_173134 [Selaginella moellendorffii] gi|300159426|gb|EFJ26046.1| hypothetical protein SELMODRAFT_173134 [Selaginella moellendorffii] Length = 559 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 59/270 (21%), Positives = 113/270 (41%), Gaps = 15/270 (5%) Query: 27 WSSHVEDNSPHVARIAIRGQI------------EDSQELIERIERISRDDSATALIVSLS 74 W+ + +A + G I S IE+I ++ + A+++ + Sbjct: 254 WTLGLSGGKADIAVLRAVGNISRQKQMGFTGSGISSDTFIEQIRQVREAKNFKAVVLRID 313 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGG A A + ++R ++ + +KPVI + ++AAS GY ++ A+ +IVA +L GSIGV Sbjct: 314 SPGGDALASDLMWRELRLLAAKKPVIASMVDVAASGGYYMAMAAGVIVAERLTLTGSIGV 373 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + + +++G + + + + P+ + ++Y F + Sbjct: 374 VTGKLNLGKLYERVGFTKEVISRGKFAELDAEQRPFRPEEAEFFGKSAKTAYKRFRDTAA 433 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN- 253 SR++ +K ++ GR+WTG A GL+D +GG + K+K Sbjct: 434 LSRSMQIEKMEEVAQGRVWTGKAAAARGLVDTLGGFSKAVAIAKQKAGISLESKVKLVEL 493 Query: 254 --PPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 N L + LL + + Sbjct: 494 SRSKPNIVSFLRGGLQVLVLLPRLLDELNA 523 Score = 81.2 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 40/282 (14%), Positives = 96/282 (34%), Gaps = 18/282 (6%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVS 72 + ++ I G+I + ++ + + + + D A+IV Sbjct: 1 MLIAWPWQRVKKGSILKMKISGEITEQLQDKFQPGMSLPQICQNLIKAAHDPRIAAVIVQ 60 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 + + I R I+ K + + Y ++C+ + A + + + Sbjct: 61 VEPLSCGWPKVDEICRHIEYYKQSGKPLVGYLAVGGEKEYYLACSCGDVFAPPGAYISLL 120 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFV 190 G+ Q +V L+K+GV + + K+ +++ +M+ ++D Y ++ Sbjct: 121 GLKVQAQFVGGVLEKIGVQPQIERIGKYKSVGDLLSRKDMSDANREMLTAILDDVYENWL 180 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG---VDQSIR 247 LV+ + L + I+ + + G I V +++V + + D Sbjct: 181 DLVNIFAGKTTAEVENLLEEGIFEIEKLHQQGWISDVKYEDQVIEEMLKAKLQIKDDKSP 240 Query: 248 KIKDWNP--PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 K D+ W L + + + + K G Sbjct: 241 KYVDYRKYSRVREWTLGLSGGKADIAVLRAVGNISRQKQMGF 282 >gi|298370239|ref|ZP_06981555.1| signal peptide peptidase SppA, 36K type [Neisseria sp. oral taxon 014 str. F0314] gi|298281699|gb|EFI23188.1| signal peptide peptidase SppA, 36K type [Neisseria sp. oral taxon 014 str. F0314] Length = 328 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 70/275 (25%), Positives = 120/275 (43%), Gaps = 14/275 (5%) Query: 13 VMLSLVTLTVVYFSWSSHVE---DNSPHVARIAIRGQIEDSQ------ELIERIERISRD 63 V+L L+ +T + + + + H A I +RG I DS+ L E +E ++ Sbjct: 51 VVLFLILITDIGNNSEGGKKIVSASGAHTAVINLRGAIGDSEFDDQVKALRESMEAAYKN 110 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCASNI 120 +A A+I+ +SPGGS F I+++ PV EM AS Y I+ A++ Sbjct: 111 KNAKAIIIRANSPGGSPVISNIAFNEIRRLKEAHKNIPVYVVAEEMCASGCYYIAAAADK 170 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 I A +S+VGSIGV+ +DK+GV + + K PFS P+ ++ Sbjct: 171 IYADPSSVVGSIGVIGGGFDATGLMDKIGVKRRLKTAGSNKGMGDPFSPETPEQTKIWNA 230 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ + F++ V R + + GRI+TG EAK+ GLID G V + + Sbjct: 231 MLADIHGEFIKAVKLGRGSRLKEKENPDIFSGRIYTGIEAKQAGLIDDFGNIYSVARDVV 290 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273 + D++ + + + + Sbjct: 291 KAPELVNYSPDDDFSKLLSRRLGMEMKMRLKEAMS 325 >gi|302383896|ref|YP_003819719.1| signal peptide peptidase SppA, 67K type [Brevundimonas subvibrioides ATCC 15264] gi|302194524|gb|ADL02096.1| signal peptide peptidase SppA, 67K type [Brevundimonas subvibrioides ATCC 15264] Length = 591 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 101/241 (41%), Gaps = 4/241 (1%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI-FRAIQKVKNRKPVITEVHEMAA 108 S + E I D S A++ +SSPGGS A E I KPV+ + + AA Sbjct: 324 SDDTAEAIYDAIEDKSVKAIVFRVSSPGGSPEASEQILAAVRAAKAAGKPVVVSMGDYAA 383 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-PMKAEPSPF 167 S GY IS +N IVA ++L GSIGV V L + GV ++ + +P Sbjct: 384 SGGYWISSEANWIVAQPSTLTGSIGVFGGKFVVSEALGRFGVDLRGLSIGGDYADAFAPS 443 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 +D +Y FV+ VS R +P + ++ GR+WTGA+ K +GL+D + Sbjct: 444 QSFTTTQRAAFSASMDRTYEEFVQRVSTGRRLPIARVREIARGRVWTGAQGKTLGLVDQL 503 Query: 228 GGQEEVWQSLYALGVDQSIRKI--KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 GG E L + + K + P++ W + S + + Sbjct: 504 GGLTEAIGKARELANIPADTSVRFKRFPTPQSPWEALSAAFGVQSEAAQALVTLGGVMSD 563 Query: 286 G 286 Sbjct: 564 P 564 Score = 77.0 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 77/225 (34%), Gaps = 8/225 (3%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA- 110 ++++ + + +D L++ L G S + + I +A+++ + + + Sbjct: 74 QIVDTLAQAEKDSHVKVLLIRLPEAGISPASADEIRQAVRRFRASGKPVIAHSQGFQPVG 133 Query: 111 ----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EP 164 Y++ +++ + T+ + G ++ D+ GV + + K Sbjct: 134 TVISSYMVGASASELWMQNTASFQATGFSADSIFLGRAFDRYGVRAEFEQRYEYKNAVNE 193 Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLI 224 S+ + M + S Y + + R + + ++ +A + LI Sbjct: 194 YTQSDYTGPHREAMTAWMTSIYDSAIANAAFDRKVTAAALKTTIEAGPYSAPQALSLKLI 253 Query: 225 DVVGGQEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFCDLKNLSI 268 D +G EE + I + D+ K ++ Sbjct: 254 DKIGQVEEAEAEAKRRAGNGADILEFGDYASSKGERQGSGRDAIA 298 >gi|220924243|ref|YP_002499545.1| peptidase S49 [Methylobacterium nodulans ORS 2060] gi|219948850|gb|ACL59242.1| peptidase S49 [Methylobacterium nodulans ORS 2060] Length = 287 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 11/278 (3%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSAT 67 + + + + + P V + + G I L +ER Sbjct: 3 FAFWSALRALLPASLRRDRPVVPVVRLSGPIGAVSPLRQGLSLGACAPALERAFGLPDIK 62 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 A+ + ++SPGGSA I R I+ + + + PV+ V ++AAS GY+I+CA++ I+A Sbjct: 63 AVAIVVNSPGGSAAQSHLIHRRIRVLAAEAKVPVLAFVEDVAASGGYMIACAADEIIADP 122 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 +SLVGSIGV+ + L++LGV + + P KA PF +P V ++ + Sbjct: 123 SSLVGSIGVVSAGFGFQGLLERLGVERRVHTTGPSKAMLDPFRPEDPADVARLKGIQADI 182 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 F LV R L G +W+G + +GL+D +G V + Y V Sbjct: 183 QAMFTELVRSRRPRLSGDPDELFSGAVWSGRQGLALGLVDALGDVRTVLRERYGETVQIR 242 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 + + + E + L+++ Sbjct: 243 LVEQVRGGLLGRLLRRREPGTEALAAFEGALALLEERA 280 >gi|6690270|gb|AAF24059.1|AF114385_1 putative protease SppA [Arabidopsis thaliana] Length = 680 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 67/264 (25%), Positives = 116/264 (43%), Gaps = 16/264 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSL 73 W+ + +A I G I +++LIE+I + A I+ + Sbjct: 368 WTLGLTGGRDQIAIIRAGGSISRVKGPLSTPGSAIIAEQLIEKIRSVRESKKYKAAIIRI 427 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 SPGG A A + ++R I+ + KPVI + ++AAS GY ++ A+N IVA +L GSIG Sbjct: 428 DSPGGDALASDLMWREIKLLAETKPVIASMSDVAASGGYYMAMAANAIVAENLTLTGSIG 487 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-SEVNPKAVQMMQDVVDSSYHWFVRL 192 V+ + +K+G + +++ + P+ ++ + +Y F Sbjct: 488 VVTARFTLAKLYEKIGFNKETISRGKYAELLGAEERPLKPEEAELFEKSAQHAYQLFRDK 547 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--K 250 + SR++P DK ++ GR+WTG +A GLID VGG +K+ Sbjct: 548 AALSRSMPVDKMEEVAQGRVWTGKDAHSRGLIDAVGGLSRAIAIAKQKANIPLNKKVTLV 607 Query: 251 DWNPPKNYWFCDLKNLSISSLLED 274 + + P L + S + D Sbjct: 608 ELSRPSTSLPDILSGIGSSVIGVD 631 Score = 83.1 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 85/256 (33%), Gaps = 16/256 (6%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDS 65 + + V + +RGQI D +L E + + D Sbjct: 106 IFVVKFRMLFAYPWQRVRKGSVLTMTLRGQISDQLKSRFNSGLSLPQLSENFVKAAYDPR 165 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 + + + E I R I K I + Y + CA N + A Sbjct: 166 IAGVYLHIDPLSCGWGKVEEIRRHILNFKKSGKFIVGYISICGLKEYYLGCACNELFAPP 225 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVD 183 ++ G+ Q ++ +K+G+ + + K+ + ++ + +M+ ++D Sbjct: 226 SAYSFLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLSRKSISEENYEMLSVLLD 285 Query: 184 SSYHWFVRLVS---ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 + Y +VS + + ++ + K+ GLI + +EV L Sbjct: 286 NIYSIGWMVVSDAQNYAGKKREDVENFINQGVYEIEKLKEAGLIKDIRYDDEVITMLKER 345 Query: 241 GVDQSIRKIKDWNPPK 256 + +K+ + K Sbjct: 346 LGVEKDKKLPTVDYKK 361 >gi|319760105|ref|YP_004124044.1| peptidase S49 [Alicycliphilus denitrificans BC] gi|317119711|gb|ADV02199.1| peptidase S49 [Alicycliphilus denitrificans BC] Length = 315 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 74/289 (25%), Positives = 125/289 (43%), Gaps = 18/289 (6%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS------QELIERIER 59 + + +++ L V+ + + HV I I G I + + + + Sbjct: 32 RAKRALVAVMAAWGLAGVWLASDLGPGKSKAHVPVIRIEGGIAGDSTKINADSVNKLLAK 91 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCA 117 DDSA+A+++ + SPGGS + I I + K KP+ + M ASAGY+I+ Sbjct: 92 AFDDDSASAVVLYIDSPGGSPAEADRIGSFIARKKQETGKPLYSVCANMCASAGYMIAMH 151 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 + I A++ SL+GSIG + + K+GV + S +KA +P++ V V+ Sbjct: 152 GDEIYASKYSLIGSIGAILSSWNFSQAIGKVGVQHNAYASGKLKAMLNPYAPVKAGDVEK 211 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 Q++VD F V R + L G +W+G EAK GL+DV+G ++V Sbjct: 212 AQELVDGMGKVFAEQVRFYRKGKLTSKVDLFTGEVWSGEEAKTYGLVDVIGTLDDVVHD- 270 Query: 238 YALGVDQSIRKIKDWNPPKNYWF-----CDLKNLSISSLLEDTIPLMKQ 281 +I D + + + I S + +PLM Q Sbjct: 271 ----KFPDGSQILDMDKSGGGFRLLRSASQAISQGIQSGMLAHVPLMMQ 315 >gi|242398488|ref|YP_002993912.1| Putative protease [Thermococcus sibiricus MM 739] gi|242264881|gb|ACS89563.1| Putative protease [Thermococcus sibiricus MM 739] Length = 335 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 60/241 (24%), Positives = 125/241 (51%), Gaps = 3/241 (1%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 ++ E + +A + + G I+++ ++I +I I DD+ +++ + SPGG Sbjct: 83 TNRTEKANVTIAILPVVGPIDETAAFDVISKIREIRNDDNIGGVVLWIESPGGYVGPVIT 142 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I++ ++K+ KP++ MAAS GYLI+CA++ I+A + VGSIGVL+ + ++ Sbjct: 143 IYKELKKLSYEKPIVAYTGGMAASGGYLIACAADKIIADPLAEVGSIGVLYVHYDLEQNY 202 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 + GV + K+ K + + ++ + +M+++ V++ + +F+++V E RN+ + T Sbjct: 203 AQNGVKVNVFKTGKYKDTGAEWRDLTEEEREMIKNEVNTYFEYFLQVVGEGRNLDLNTTR 262 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 DGR+W +E K L+D G + +L + +S + ++ + Sbjct: 263 KYGDGRVWFASE-VKGTLVDDTGDLDFTISALEEILNVKSANVVLYSTQKVDFGIYQSSS 321 Query: 266 L 266 L Sbjct: 322 L 322 >gi|212697414|ref|ZP_03305542.1| hypothetical protein ANHYDRO_01984 [Anaerococcus hydrogenalis DSM 7454] gi|212675606|gb|EEB35213.1| hypothetical protein ANHYDRO_01984 [Anaerococcus hydrogenalis DSM 7454] Length = 333 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 71/253 (28%), Positives = 132/253 (52%), Gaps = 7/253 (2%) Query: 30 HVEDNSPHVARIAIRGQIEDS---QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 D+ +A ++ G I D + +++++ + DDS LI+ ++SPGG+ Y E I Sbjct: 61 EKGDSKNKIAVLSYEGAIGDGQVYDDFMDQLDDVYDDDSVKGLIMQVNSPGGAVYNSEQI 120 Query: 87 FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I+K++ K PV T + MAAS GY IS ++ I A+ +L GSIGV+ + Sbjct: 121 ANKIKKIQKDKKIPVFTVMKTMAASGGYYISAPTDRIYASNETLTGSIGVIMSSTSFQGL 180 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 +K G+ +++ + MK S ++ + + QD+++SS+ FV++VS+ R++ D+ Sbjct: 181 FEKYGIKQQNITTGKMKDAGSVGKDMTDEQKKYFQDLINSSFDRFVKIVSQGRSMKEDEV 240 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA--LGVDQSIRKIKDWNPPKNYWFCD 262 L+DGR++ GA+AK GL+D +G + + + + + + D + +F Sbjct: 241 RKLADGRVYDGAQAKNNGLVDKIGDLDLAIEDMKKDFKLNNPEVYQYDDDMASFSRFFSK 300 Query: 263 LKNLSISSLLEDT 275 +NL + D Sbjct: 301 AENLLNKNSSSDL 313 >gi|38638590|ref|NP_943176.1| peptidase [Pseudomonas sp. ND6] gi|34335378|gb|AAP44276.1| probable peptidase [Pseudomonas sp. ND6] Length = 258 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 16/255 (6%) Query: 38 VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---K 94 VAR+ G+ ++ L + + ++ A+I+ ++SPGGS ++ ++++ Sbjct: 12 VARLG-DGEEASAENLKRSLGKAFESENTKAVILEINSPGGSPVQAGHVYDEVRRLRALH 70 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 V + ++ AS GY I+ A++ I A + SLVGSIGV + KLGV +S Sbjct: 71 PDTKVYAVITDLGASGGYYIASAADEIFADKASLVGSIGVTAASFGYVELMQKLGVERRS 130 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVLSDGRI 212 S KA F N + + + V+ ++++ F+R V R + L G I Sbjct: 131 YTSGEHKAFLDQFQPQNQEETKFWEGVLKTTHNQFIRSVEAGRGERLKAKENPDLYSGLI 190 Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 WTG +A +GL+D +G + V + + + KI D+ +N + S Sbjct: 191 WTGEQAVGLGLVDRLGDSDYVAREVVG------VSKIVDFTRKQNPLDRFASKIGASV-- 242 Query: 273 EDTIPLMKQTKVQGL 287 L + GL Sbjct: 243 --AEHLSLRLGFDGL 255 >gi|254471707|ref|ZP_05085108.1| serine protease [Pseudovibrio sp. JE062] gi|211958909|gb|EEA94108.1| serine protease [Pseudovibrio sp. JE062] Length = 286 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 62/262 (23%), Positives = 112/262 (42%), Gaps = 18/262 (6%) Query: 43 IRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 + G I + + + +E A A+ +S++SPGGS IF+ I+++ Sbjct: 25 MSGAIGAASPLKSGLNLSSVEDALETAFSFKEAPAVALSINSPGGSPVQSHLIFKRIRQL 84 Query: 94 --KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 +N K V+ V ++AAS GY+I+ A + I+ S++GSIGV+ L+K GV Sbjct: 85 ADENNKQVLVFVEDVAASGGYMIALAGDDIIVDPASIIGSIGVVSAGFGFTELLEKAGVQ 144 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + S K PF+ + ++ ++ + + F+ +V R L G Sbjct: 145 RRVYTSGEKKVTLDPFAPEVKEDIEHLKTLQHEIHEMFIDMVKSRRGDVLSDDDNLFSGL 204 Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 WTGA+A+ +GL+D +G Y K+K K + + S+ Sbjct: 205 FWTGAKARDLGLVDGLGDLHSTIHERYG-----KETKVKVVGTKKRFLGRFIPGASLKGG 259 Query: 272 LEDTIPLMKQTKVQGL--WAVW 291 L + + + L ++W Sbjct: 260 LNEAAGTLPAAALATLEEKSLW 281 >gi|189502064|ref|YP_001957781.1| hypothetical protein Aasi_0656 [Candidatus Amoebophilus asiaticus 5a2] gi|189497505|gb|ACE06052.1| hypothetical protein Aasi_0656 [Candidatus Amoebophilus asiaticus 5a2] Length = 513 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 59/213 (27%), Positives = 109/213 (51%), Gaps = 10/213 (4%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGS 79 H + ++ +A + G I D + + + ++ D A+++ ++SPGGS Sbjct: 298 PHTKQHNNRIAVLIASGAIVDKEIGPNYITTSIFVRMLRKLREDPDVKAIVLRINSPGGS 357 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A A + I++ + + KP++ + ++AAS GY ++ + I+A T++ GSIG+ Y Sbjct: 358 ALASDTIWKELMLTRACKPIVASMSDIAASGGYYLAAGCDYILAHPTTITGSIGIYGLYF 417 Query: 140 YVKPFLDK-LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V L LG+ VK+SP SP + ++Q ++S Y F+ V+ R Sbjct: 418 DVHALLKNKLGIVGDVVKTSPSADIFSPVRPFSEHEKNIIQQHIESGYDNFLDKVATGRQ 477 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + L++GR+W+G+ AK+ GL+D +GG E Sbjct: 478 MKKVDVARLAEGRVWSGSLAKEHGLVDQLGGLE 510 Score = 72.7 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 89/269 (33%), Gaps = 22/269 (8%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRG----QI-------------- 47 + I ++ ++ + + V RI + G +I Sbjct: 19 RFITIALIISLIIGIQKHTLKSTVPSRLTDKTVLRIVLHGRLVEEIHQPLLQVLTKEESH 78 Query: 48 -EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 D + I D + + + + A+Q K I E Sbjct: 79 EIDILTIKNAIRSAQEDRYIAGIYLEVGELVAGWATLAELRGALQAFKATGKFIVAYGEN 138 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 S Y ++ ++ IV G+ + K LDKL ++ + + K+ P Sbjct: 139 YNSKSYYLASLADEIVLHPAGNFIFTGLKLTVLFYKQLLDKLDIAPQIFRVGRYKSAVEP 198 Query: 167 FSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GAEAKKVGL 223 F + ++ + + + ++++ Y ++ V+ +N+ +++ T EA K GL Sbjct: 199 FMQCSMSEASKEQNRVLLNNIYDHLIQTVAIHKNLDPSVLKSMANTLAITQPQEAYKAGL 258 Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 + VG ++ + A KI Sbjct: 259 VTQVGYFNDIEALIRAKLKLAVATKINYI 287 >gi|269127810|ref|YP_003301180.1| signal peptide peptidase SppA, 67K type [Thermomonospora curvata DSM 43183] gi|268312768|gb|ACY99142.1| signal peptide peptidase SppA, 67K type [Thermomonospora curvata DSM 43183] Length = 570 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 116/247 (46%), Gaps = 6/247 (2%) Query: 44 RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI-QKVKNRKPVITE 102 +G S + RD+ A++ ++SPGGSA A +AI+R + + KPVI Sbjct: 306 QGPAMGSDTIGAAFRAAVRDERIKAIVFRVNSPGGSAVASDAIWREVVLARRAGKPVIVS 365 Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 + ++AAS GY ++ A+++IVA ++ GSIGV+ + L+++GV + SV Sbjct: 366 MGDVAASGGYYVAMAADVIVAQPGTITGSIGVVTGKAVLSGLLERIGVGMGSVTDGEHAL 425 Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVG 222 S + +P + + +D Y F V+E R + + L+ GR+WTGA+AK+ G Sbjct: 426 MYSAIKDFSPSEWERINASLDHIYENFTAKVAEGRGLSRRRVEELARGRVWTGADAKEHG 485 Query: 223 LIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282 L+D +GG E + + ++ + L+ L + ED + Sbjct: 486 LVDELGGLELALELARKKAGLPADAPVRTF-----PHLGPLERLRPAESSEDRAAASARF 540 Query: 283 KVQGLWA 289 G A Sbjct: 541 DGWGSLA 547 Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 82/215 (38%), Gaps = 8/215 (3%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA-- 108 +++++ + + D ALIV + G + + A+ ++ + E Sbjct: 53 RDVLDGLRKARGDARVRALIVRVGGTIG-LAMAQELRDAVTALRQAGKLTVAWSETFGEG 111 Query: 109 ---SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--E 163 + Y ++ A + + T VG GV + P+++ L+K G+ + K Sbjct: 112 RQGNVPYYLASAFDRVYLQPTGEVGLTGVALEEPFLRGALEKAGIEPRFAARHEYKTVAN 171 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 P+ + Q +VDS+ +++ R + ++ L D AEA + GL Sbjct: 172 MFMERAYTPEHRESSQRLVDSAGRQLAEGIAQGRGLTVERVRELIDRGPLLAAEALEAGL 231 Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 +D + ++EV+ + R + N Sbjct: 232 VDRLAYRDEVYAEVREKVGGPDGRVQLRYVSRYNR 266 >gi|300871688|ref|YP_003786561.1| periplasmic serine proteases ClpP class [Brachyspira pilosicoli 95/1000] gi|300689389|gb|ADK32060.1| periplasmic serine proteases ClpP class [Brachyspira pilosicoli 95/1000] Length = 277 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 62/219 (28%), Positives = 108/219 (49%), Gaps = 3/219 (1%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAA 108 ++LI+ E +DD+ A+++ + SPGG+ + E + +Q++K + KP++ MAA Sbjct: 23 EKLIDDFEYYMKDDNVKAIVLQVDSPGGALTSCEEALKYLQELKKKYPKPIVASFRSMAA 82 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 S GY IS ++ I A E++L GSIGV+ Q+ V +DK G+ + ++KS K SPF Sbjct: 83 SGGYYISMIADKIYANESTLTGSIGVISQFVNVSSLMDKYGIKMYTIKSGRNKDSLSPFR 142 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVV 227 E + QD+ F +V +R L DGR+++G A +VGLID + Sbjct: 143 EPREDELAYWQDMTYEFVAQFTNVVETARGDKIKGNREDLFDGRVFSGKRALEVGLIDNI 202 Query: 228 GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 G ++ + + + P + + + Sbjct: 203 GTLKDAIKDAAEMAEIKDEEPYIIKRPENKNFINLILSS 241 >gi|284164633|ref|YP_003402912.1| signal peptide peptidase SppA, 36K type [Haloterrigena turkmenica DSM 5511] gi|284014288|gb|ADB60239.1| signal peptide peptidase SppA, 36K type [Haloterrigena turkmenica DSM 5511] Length = 331 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 114/234 (48%), Gaps = 19/234 (8%) Query: 38 VARIAIRGQIE---------------DSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 VA +A+ G I + +++++I+R DDS AL+V L++PGG Sbjct: 68 VAEVAVEGPITRDGGGGSLPSSPRGTPADDIVDQIDRADEDDSVDALLVKLNTPGGEVVP 127 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + I A ++ P I ++ AS GY I+ + + A E S+VGSIGV+ Sbjct: 128 SDDIRLAAERF--DGPTIAYATDVCASGGYWIASGCDELWAREGSIVGSIGVIGSRVNAS 185 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 +K+G+S + + K +P E++ +Q ++D Y FV VS+ R++ + Sbjct: 186 DLAEKVGLSYERFAAGDYKDAGTPLKEMDEDERAYLQGLIDDYYDTFVERVSDGRDLDSE 245 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 ++ RI+ G +A+++ L+D +G + E+ L ++ ++++ P + Sbjct: 246 FVRD-TEARIYLGEQARELELVDRLGTRREIEDELADRL-ERDEISVEEFEPER 297 >gi|326386909|ref|ZP_08208523.1| signal peptide peptidase SppA, 67K type [Novosphingobium nitrogenifigens DSM 19370] gi|326208589|gb|EGD59392.1| signal peptide peptidase SppA, 67K type [Novosphingobium nitrogenifigens DSM 19370] Length = 650 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 57/234 (24%), Positives = 106/234 (45%), Gaps = 10/234 (4%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVS 72 + + + +A + + G I D + I+R + +++ Sbjct: 297 LGAYLADLPAQKGGKAIAVVNVEGAIVDGNAGPGVAGGDRIAALIDRATASGDYAGMVLR 356 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVI-TEVHEMAASAGYLISCASNIIVAAETSLVGS 131 + SPGGS E I A+++ K + + +AAS GY +S ++ I A ++ GS Sbjct: 357 VDSPGGSVTGAERIRAAVERFKASGLPVAVSMGNLAASGGYWVSTPADRIFAEPATITGS 416 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IG+ P + L K GV+ ++++P+ +PS +P+ ++Q +D+ YH FV Sbjct: 417 IGIFAVIPSFEDSLAKFGVTTDGLRTTPLSGQPSILGGFSPEMEAVLQTEIDAGYHRFVG 476 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 LVS SR+ Y ++ GR+W G A+++GL+D G + + Sbjct: 477 LVSASRHKSYADVDRIAQGRVWDGGTARQIGLVDEFGNLDNALNWVAGKAGATK 530 Score = 63.5 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 73/216 (33%), Gaps = 9/216 (4%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + +L+ IE + D A+ + L GG + A+ KV+ + + Sbjct: 81 AHDLVRAIEAAATDTRIRAVTLDLEGFGGAGQVTLSRLGEALDKVRGAGKPVLVRAVLYD 140 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF- 167 ++ ++ I V G + LD+L V K K+ P+ Sbjct: 141 DDALQLAAHASEIWVDPLGGVMVRGPGGTLLFYHGLLDRLKVKAHVFKVGTYKSAVEPYI 200 Query: 168 -SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV----- 221 ++P+A + V + +H ++ V ++R + + ++ Sbjct: 201 RDSLSPEAREAETAVYTAVWHDWLAEVKKARPRANLALVTSDPVKWLAASDGNAAEAAKA 260 Query: 222 -GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 GL+D +G + + + + + + + Sbjct: 261 AGLVDRIGDKVAFGKRAAEIVGGDRDQGLGGYKATR 296 >gi|237750827|ref|ZP_04581307.1| signal peptide protease IV [Helicobacter bilis ATCC 43879] gi|229373272|gb|EEO23663.1| signal peptide protease IV [Helicobacter bilis ATCC 43879] Length = 294 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 59/255 (23%), Positives = 120/255 (47%), Gaps = 3/255 (1%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVE-DNSPHVARIAIRGQIEDSQELIERIERISR 62 + I T + ++ L+ + + + +S E ++ P++A++ + I +S+ +IE I + Sbjct: 14 IFDFINTYFKVVVLLLIVLFLATLASDEEIESKPNLAKLYLNFPIYESESFAAQIEAIKK 73 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 +D +++ + SPGG+ A I I+++ + PV+ + AS Y ++ I Sbjct: 74 NDDIKGVLLLIDSPGGAVGASIEIADMIKELNEKIPVVAYTQSLMASGSYYAGMYAHSIY 133 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +L+GSIGV+F P + +DK+G+ ++ V + K S + + + ++ Sbjct: 134 ANRGALIGSIGVIFSAPNFEEAMDKIGIKMQGVSAGEYKEIGSITRKWKNTEKEFINNLT 193 Query: 183 DSSYHWFVRLVSESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 Y F V +R ++G+I++ + A K+GLID V +V + L L Sbjct: 194 QEQYKMFYTDVIAARGERLKTKNHLDFAEGKIFSASNALKLGLIDGVNSMSKVEKILQNL 253 Query: 241 GVDQSIRKIKDWNPP 255 + I +K Sbjct: 254 SGVEEIVWLKKDKME 268 >gi|32490856|ref|NP_871110.1| protease 4 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166062|dbj|BAC24253.1| sppA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 615 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 65/257 (25%), Positives = 118/257 (45%), Gaps = 12/257 (4%) Query: 33 DNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAG 83 N +A I G I + + + +I++ D + +L+V ++SPGGS A Sbjct: 321 SNKGEIAVIFANGVIINGPDKPGFSSGDFIAYQIKQARLDPNIKSLVVRINSPGGSVNAS 380 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + KN KPV+ + +AAS GY IS +N I++ +L GSIG+ ++ Sbjct: 381 EIIRSELDATKNMGKPVVVSMGGIAASGGYWISTPANYIISNPDTLTGSIGIFGIINTIE 440 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+ +G+ V +SP+ + +M + + Y+ F+ LVS+SRN Sbjct: 441 STLESIGIYSDGVSTSPLANINIAKKLPSEFLEKMKLIIENGYYN-FLSLVSKSRNKTIK 499 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + + G +W G +A K GL+D +G ++ L IK +P + Sbjct: 500 EVDKIGQGHVWIGTDALKKGLVDKLGDFDDAIIKAAELSNLSD-YDIKWNDPEPSIIDFI 558 Query: 263 LKNLSISSLLEDTIPLM 279 KN ++ ++++ + + Sbjct: 559 YKNTNLINIIKLYLNYI 575 Score = 83.9 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 54/310 (17%), Positives = 119/310 (38%), Gaps = 42/310 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + F + + ++L + + ++YF ++ + +N I I G I D Sbjct: 19 LNFTRRLVLNLLLILIIFCILILYFQTNNPINENKKGALFIDIIGIIVDKPSSSSKFKQL 78 Query: 52 ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92 +++ I + D++ T L++ L GS + I +A+++ Sbjct: 79 SRELIGSSSNKLQENSLFDIVYAIRKAKDDNNITGLVLYLKDFAGSDQTSLQYIGKALKE 138 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 K I + + + A Y ++ SNII +V G+ Y K FL KL ++ Sbjct: 139 FKKTGKPIYSIGDNYSQAQYFLASYSNIIYLNPQGMVDLHGISTNNFYYKTFLKKLKINT 198 Query: 153 KSVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT------ 204 + K+ P ++ +A + + + + ++ ++S +RNI ++ Sbjct: 199 HVFRVGNYKSAVEPVLRDNMSDEAKEDDKRWIQKLWRSYLNVISINRNIKIEEIFPNVKE 258 Query: 205 --LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL----GVDQSIRKIKDWNPPKNY 258 L + T A K L+D + E+ + + + ++S KI +N Sbjct: 259 ILEKLKIVKGNTAEFALKNNLVDKIESNPEIEKEMIKIFGWNKNEKSFNKISIYNYQDKL 318 Query: 259 WFCDLKNLSI 268 F + +++ Sbjct: 319 KFSNKGEIAV 328 >gi|254302877|ref|ZP_04970235.1| possible S49 family peptidase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323069|gb|EDK88319.1| possible S49 family peptidase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 589 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 68/271 (25%), Positives = 116/271 (42%), Gaps = 23/271 (8%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLS 74 ++D++ + I + G I +SQ E +E++ D A+++ ++ Sbjct: 306 EGSMDDSNNIIYVIPLEGDIVESQTEVFAGEENINVSETLEKLNIAKESDKVKAVVLRVN 365 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGGSA + I ++++ KPV + +AAS GY IS +N I ++ GSIGV Sbjct: 366 SPGGSALTSDIIAEKVKELAEEKPVYVSMSSVAASGGYYISANANKIFVDRNTITGSIGV 425 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + P + GV+I+ + S S K + + Y F+ +VS Sbjct: 426 VSILPDFSKLITDNGVNIEKISEGEYSDLYSSDS-FTEKKYNKIYNSNLKVYEDFLNVVS 484 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK---- 250 + R I +K +++GRIWTG EA K+GL D +GG +L + Sbjct: 485 KGRKIDKEKLKTIAEGRIWTGDEAIKIGLADEIGGLNATIYALAEDNDMDEYAIVIAKDK 544 Query: 251 -----DWNPPKNYWFCDLKNLSISSLLEDTI 276 + Y D K+L + +D + Sbjct: 545 FELGNIYKKYSRYIKMDTKDLIKEKIFKDYL 575 Score = 62.7 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 100/281 (35%), Gaps = 32/281 (11%) Query: 3 FVLKKI-------KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARI----------AIRG 45 FV+K+I ++ ++ V+ + ++ Sbjct: 24 FVIKEIFSFFIKLFLFLFIVGIIISAVIKSFEEKPTVAIKNKAYVLINLGDSYNERLLKS 83 Query: 46 QIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPV 99 + + + ++ IE IS DD +I+ L+ S E + + + + K + Sbjct: 84 NLFEDDSINFYTLLQSIETISYDDRVEGIILKLNGDSLSYAQSEELAQELSMARAANKKI 143 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF-QYPYVKPFLDKLGVSIKSVKSS 158 I + YL S A+ I + + S +I F + Y+K DK GV + Sbjct: 144 IAYFENVGRKNYYLASYANEIYMPSANSTSVNIYPYFREEFYIKKLADKFGVKFNIIHVG 203 Query: 159 PMKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216 K+ S ++ +A + V+D +Y+ F+ +VS +R I D + A Sbjct: 204 DYKSYMENLANSTMSKEAKEDTVRVLDKNYNNFLDVVSLNRKISRDDLDKIIKDGELVAA 263 Query: 217 ---EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + LID + V + G I I+++ Sbjct: 264 SSIDLMNNNLIDKYAYWDNVISMV---GGKDKIITIQEYAK 301 >gi|253582352|ref|ZP_04859575.1| protease IV [Fusobacterium varium ATCC 27725] gi|251835891|gb|EES64429.1| protease IV [Fusobacterium varium ATCC 27725] Length = 584 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 61/239 (25%), Positives = 101/239 (42%), Gaps = 12/239 (5%) Query: 30 HVEDNSPHVARIAIRGQI-EDSQE-----------LIERIERISRDDSATALIVSLSSPG 77 +A I G I DS +IE I + +DD+ +++ ++SPG Sbjct: 305 TENKKKDKIAVIYAEGTIFMDSTSGGISGNVTPNVMIEEINKALKDDTVKGIVLRINSPG 364 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 GSA A I I + KP+ + + AS GY I+ + I A + SL GSIGV+ Sbjct: 365 GSALAANIISNKIVEANGIKPIYVSIGGVGASGGYYIASVTEKIYADKDSLTGSIGVVSI 424 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P +K L + +++ VK S + + + Y+ F+ VS R Sbjct: 425 IPNIKKMLGNVSINVDEVKKGEYSDIYSMVKDFDKDKRDKLYASNLKVYNEFLDTVSFGR 484 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 + ++ G++W G EA ++GL+D +GG E + L ++ N P Sbjct: 485 KLNRQHVERIAQGKVWLGEEALELGLVDEIGGLENAIKGLAGDLKLIDYEIVEIMNAPN 543 Score = 73.9 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 42/269 (15%), Positives = 97/269 (36%), Gaps = 30/269 (11%) Query: 3 FVLKKIKTRYV-MLSLVTLTVVYFSWSSHVEDNSPHVAR-------IAIR---------- 44 FV+K+I + ++ + + ++ + V I + Sbjct: 17 FVIKEIFSFFIKAFLFLVVIFSIGAFFAKTALEKDKVTIEKGSYVEIDLSKEYKEKGKNL 76 Query: 45 -----GQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV 99 GQ + ++ + I RD + +++ L + + E + + I +K K Sbjct: 77 PEFLKGQDTNFFSMLRAFDSIERDGNIKGVVLKLDNLSLDSAQIEEVGKKIDNLKKSKKE 136 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSL--VGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + M + Y ++ SN I T V G + Y K D+LG+ + Sbjct: 137 VYSYMTMVNNRNYSLAIKSNQIFMPPTMSAPVNITGYYGELMYYKLLADRLGIEFNVIHV 196 Query: 158 SPMKAE--PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWT 214 KA ++ + + ++ + + Y+ FV ++ R + +D + +G + Sbjct: 197 GDYKAYGENLIKEHISKEYKENIERMYNRKYNNFVNNIAAERKVNHDFINEKILNGDLMV 256 Query: 215 GA--EAKKVGLIDVVGGQEEVWQSLYALG 241 + KK+ L+D +++ Q + Sbjct: 257 SEPNQMKKLNLVDEFMYYDQLKQVIGEKK 285 >gi|159043193|ref|YP_001531987.1| peptidase S49 [Dinoroseobacter shibae DFL 12] gi|157910953|gb|ABV92386.1| peptidase S49 [Dinoroseobacter shibae DFL 12] Length = 265 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 63/266 (23%), Positives = 116/266 (43%), Gaps = 22/266 (8%) Query: 33 DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + P VA + ++G I + Q + +ER A+ + ++SPGGS Sbjct: 9 KSDPTVAVVRLQGAIAATGRGMLNDQSVGPLLERAFTKGKPDAVALVINSPGGSPAQSSL 68 Query: 86 IFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I I+++ K PV V ++AAS GY I+ A++ I TS+VGSIGV+ Sbjct: 69 IGARIRRLAEEKEVPVYAFVEDVAASGGYWIAAAADEIWLDATSIVGSIGVISASFGFHE 128 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 +++ G+ + + K+ PF P+ V+ ++ + + F ++ R + Sbjct: 129 LMERQGIERRVYTAGKDKSLLDPFRPERPEDVERLKGLQAQLHETFKGHITARRGAKLPE 188 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L G +W G + VGL D +G V + + + + + P + L Sbjct: 189 DRDLYTGEVWIGQQGIDVGLADGIGHVAPVMKEKFG-----DKTRFRTYGPRRP-----L 238 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289 + S+++DT+ ++ GLWA Sbjct: 239 ISRFGFSVVDDTLHALEAR---GLWA 261 >gi|114764456|ref|ZP_01443681.1| peptidase, family S49 [Pelagibaca bermudensis HTCC2601] gi|114543023|gb|EAU46042.1| peptidase, family S49 [Roseovarius sp. HTCC2601] Length = 265 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 58/260 (22%), Positives = 106/260 (40%), Gaps = 19/260 (7%) Query: 33 DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 P VA + ++G I Q L +ER R A+ + ++SPGGS Sbjct: 9 KKKPTVAVVRLQGAIGTGGRMALSDQSLRPLLERAFRKGKPVAVALEINSPGGSPVQSSL 68 Query: 86 IFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I I+++ PV ++AAS GY I+ A++ I A +S++GSIGV+ Sbjct: 69 IGARIRRLSQECEVPVFAFTEDVAASGGYWIASAADEIHADPSSILGSIGVISAGFGAHV 128 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + G+ + + K+ PF N + V + ++ + F+ + + R Sbjct: 129 FLQRQGIERRVHTAGRSKSMLDPFRPENEEDVARLNRLLGQLHETFIAQIKDRRGAKLAD 188 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L G +W G A +VGL D +G V + + + + + + Sbjct: 189 NPDLFTGEVWIGKAACEVGLADGIGHLVPVMKDKFG-----DKVRFRRYEQKRRLLPRL- 242 Query: 264 KNLSISSLLEDTIPLMKQTK 283 ++L +D + + + Sbjct: 243 ----GATLAQDALSTIDERA 258 >gi|302805296|ref|XP_002984399.1| hypothetical protein SELMODRAFT_156630 [Selaginella moellendorffii] gi|300147787|gb|EFJ14449.1| hypothetical protein SELMODRAFT_156630 [Selaginella moellendorffii] Length = 559 Score = 115 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 108/243 (44%), Gaps = 12/243 (4%) Query: 27 WSSHVEDNSPHVARIAIRGQI------------EDSQELIERIERISRDDSATALIVSLS 74 W+ + +A + G I S IE+I ++ + A+++ + Sbjct: 254 WTLGLSGGKADIAVLRAVGNISRQKQMGFTGSGISSDAFIEQIRQVREAKNFKAVVLRID 313 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGG A A + ++R ++ + +KPVI + ++AAS GY ++ A+ +IVA +L GSIGV Sbjct: 314 SPGGDALASDLMWRELRLLAAKKPVIASMVDVAASGGYYMAMAAGVIVAERLTLTGSIGV 373 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + + +++G + + + + P+ + ++Y F + Sbjct: 374 VTGKLNLGKLYERVGFTKEVISRGKFAELDAEQRPFRPEEAEFFGKSAKTAYKRFRDTAA 433 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 SR++ +K ++ GR+WTG A GL+D +GG + K+K Sbjct: 434 LSRSMQIEKMEEVAQGRVWTGKAAAARGLVDTLGGFSKAVAIAKQKAGISLESKVKLVEL 493 Query: 255 PKN 257 ++ Sbjct: 494 SRS 496 Score = 81.2 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 40/282 (14%), Positives = 96/282 (34%), Gaps = 18/282 (6%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDDSATALIVS 72 + ++ I G+I + ++ + + + + D A+IV Sbjct: 1 MLIAWPWQRVKKGSILKMKISGEITEQLQDKFQPGISLPQICQNLIKAAHDPRIAAVIVQ 60 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 + + I R I+ K + + Y ++C+ + A + + + Sbjct: 61 VEPLSCGWPKVDEICRHIEYYKQSGKPLVGYLAVGGEKEYYLACSCGDVFAPPGAYISLL 120 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFV 190 G+ Q +V L+K+GV + + K+ +++ +M+ ++D Y ++ Sbjct: 121 GLKVQAQFVGGVLEKIGVQPQIERIGKYKSVGDLLSRKDMSDANREMLTAILDDVYENWL 180 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG---VDQSIR 247 LV+ + L + I+ + + G I V +++V + + D Sbjct: 181 DLVNIFAGKTTAEVENLLEEGIFEIEKLHQQGWISDVKYEDQVIEEMLKAKLQIKDDKSP 240 Query: 248 KIKDWNP--PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 K D+ W L + + + + K G Sbjct: 241 KYVDYRKYSRVREWTLGLSGGKADIAVLRAVGNISRQKQMGF 282 >gi|118602719|ref|YP_903934.1| peptidase S49 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567658|gb|ABL02463.1| peptidase S49 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 315 Score = 115 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 71/297 (23%), Positives = 124/297 (41%), Gaps = 21/297 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV-------EDNSPHVARIAIRGQI-----EDSQEL 53 ++ + + +L + V + S + SP VA + + G I D+ E Sbjct: 24 RRWRIIFSLLFVGYFYFVSYIGVSGSGILETVLKKESPFVAEVVLSGTIQSSGSIDADEA 83 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAG 111 IE + ++A A+I+ ++SPGGS I++AI + K K + + ++ AS Sbjct: 84 IELLHSAFESENAKAVILRINSPGGSPVQSSRIYKAIVRFKKQFDKKIYVVIEDICASGC 143 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I A++ I A E+S++GSIGV+ + KLG+ + + K FS + Sbjct: 144 YYIVSAADEIYADESSIIGSIGVVMSSFGAVDAIKKLGIKRRLYTAGKYKGLLDSFSPED 203 Query: 172 PKAVQMMQDVV-DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 K + +Q + D S+ F+ V R K L G IW G E+ K+GLID + Sbjct: 204 EKTLMHIQTSILDKSHQNFINAVKAGRGNKLSKHKDLFTGLIWLGQESNKLGLIDGIADA 263 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + + I + K + + +L L+ Q + L Sbjct: 264 NYIAKHIIG------IDSRILFEKEKTLLEQLTEASAKDIVLAINDRLISQNPIGSL 314 >gi|325846372|ref|ZP_08169341.1| signal peptide peptidase SppA, 36K type [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481556|gb|EGC84596.1| signal peptide peptidase SppA, 36K type [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 333 Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 69/253 (27%), Positives = 132/253 (52%), Gaps = 7/253 (2%) Query: 30 HVEDNSPHVARIAIRGQIEDS---QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 D+ +A ++ G I D + +++++ + DDS +I+ ++SPGG+ Y E I Sbjct: 61 EKGDSKNKIAVLSYEGAIGDGQVYDDFMDQLDDVYDDDSVKGVIMQVNSPGGAVYNSEQI 120 Query: 87 FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I+K++ K PV T + MAAS GY IS ++ I A+ +L GSIGV+ + Sbjct: 121 ANKIKKIQKDKKIPVFTVMKTMAASGGYYISAPTDRIYASNETLTGSIGVIMSSTSFQGL 180 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 +K G+ +++ + MK S ++ + + QD+++SS+ FV++VS+ R++ D+ Sbjct: 181 FEKYGIKQQNITTGKMKDAGSAGKDMTDEQKKYFQDLINSSFDRFVKIVSQGRSMKEDEV 240 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA--LGVDQSIRKIKDWNPPKNYWFCD 262 L+DGR++ GA+AK GL+D +G + + + + + + + + +F Sbjct: 241 RKLADGRVYDGAQAKSNGLVDKIGDLDLAIEDMKKDFKLNNAEVYQYDNDMASFSRFFSK 300 Query: 263 LKNLSISSLLEDT 275 +NL + D Sbjct: 301 AENLLNKNSSSDL 313 >gi|162456988|ref|YP_001619355.1| Signal peptide peptidase [Sorangium cellulosum 'So ce 56'] gi|161167570|emb|CAN98875.1| Signal peptide peptidase [Sorangium cellulosum 'So ce 56'] Length = 619 Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 72/297 (24%), Positives = 134/297 (45%), Gaps = 22/297 (7%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIE--------------DSQELIERIERISRDD 64 +L V+ S S +PHVA + G I +EL + I R++ D Sbjct: 287 SLVDVFRSVSGASSLGAPHVAVVPAIGGITMSAKGMPIGSSDGIGERELGKTITRLTEDQ 346 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 SA A+++ + SPGGSA A + +++ + +++ +KP++ + MAAS GY ++CA IVA Sbjct: 347 SAKAVVLRIDSPGGSALASDLLWQKLMRLRQQKPLVVSIGGMAASGGYYLACAGTKIVAE 406 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP------MKAEPSPFSEVNPKAVQMM 178 TS++GSIGV+ V L +G++ ++V ++P A S + + + Sbjct: 407 RTSIIGSIGVVGGKFAVGKALADIGINAETVAANPDPQRAARAAYMSALTPWDEPTRARV 466 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 +++ Y F++ ++ RN+P + ++GRI+ G EA L+D +GG E Sbjct: 467 LASMEAVYDLFLKRITAGRNLPLETIAPSAEGRIFGGVEAAGRSLVDELGGLERAIALAR 526 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP--LMKQTKVQGLWAVWNP 293 L + ++ + +K+ + + +V P Sbjct: 527 ELAELPTDAPVEIEQDDGGLLELLATGDEANEGSARAPDRAALKERAREAMASVLLP 583 Score = 82.4 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 84/230 (36%), Gaps = 5/230 (2%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI-TEVHEMAASA 110 +L++ + +S SA +V L S + I R + V+ + E + Sbjct: 76 QLVQSLRALSESASAKGFLVRLGSARLAFARAHEIGRILGDVRAAGRPVVCHADEYNNAT 135 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 L S A + + + V ++G+ Q + K LDKL V + ++ K PF+ Sbjct: 136 MLLASIACSKLWLSPAGQVDTVGIAAQLVFAKGLLDKLNVDVDFLQVGKFKGASEPFTRE 195 Query: 171 --NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 +P+A + ++ + ++ + E R + + + EAK L+D +G Sbjct: 196 GASPEARRSLESALGGVREVWLSAIVEGRG--KEALREALEDGPFAPEEAKARALVDEIG 253 Query: 229 GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278 E + L + P + L ++ S ++ Sbjct: 254 DLESATEDAKKLAGTERSVPRFGGAPRDASFSRSLVDVFRSVSGASSLGA 303 >gi|23009603|ref|ZP_00050591.1| COG0616: Periplasmic serine proteases (ClpP class) [Magnetospirillum magnetotacticum MS-1] Length = 320 Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 64/263 (24%), Positives = 106/263 (40%), Gaps = 17/263 (6%) Query: 30 HVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSA 80 +P VA + + G I + +ER A+ + ++SPGGS Sbjct: 16 RFRKAAPRVAVVRLSGAIGAVSPIRPGLSIATVAPSLERAFAVPDVAAVALIINSPGGSP 75 Query: 81 YAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 IFR I+ + K V V + AAS GY+I+CA++ IVA SLVGSIGV+ Sbjct: 76 VQSHLIFRRIRALAAEKKVKVFAFVEDAAASGGYMIACAADEIVADPASLVGSIGVVSAG 135 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 ++++G+ + KA PF NP+ + ++++ F LV E R Sbjct: 136 FGFDRLIERIGIERRVHTQGEAKAMLDPFRPENPQDIARLKEIQADVQALFTGLVRERR- 194 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 L G +WTG +A +GL+D +G + Y +++ + Sbjct: 195 PTLTADRDLFTGAVWTGRQALDLGLVDALGDLRGTLRERYG-----EDVELRLIAETRGS 249 Query: 259 WFCDLKNLSISSLLEDTIPLMKQ 281 W L + + + Sbjct: 250 WLARLLRRAGPGQTAELADALIA 272 >gi|23501300|ref|NP_697427.1| protease IV [Brucella suis 1330] gi|148560700|ref|YP_001258420.1| putative protease IV [Brucella ovis ATCC 25840] gi|161618370|ref|YP_001592257.1| peptidase S49 [Brucella canis ATCC 23365] gi|163842678|ref|YP_001627082.1| peptidase S49 [Brucella suis ATCC 23445] gi|256368852|ref|YP_003106358.1| protease IV, putative [Brucella microti CCM 4915] gi|23347188|gb|AAN29342.1| protease IV, putative [Brucella suis 1330] gi|148371957|gb|ABQ61936.1| putative protease IV [Brucella ovis ATCC 25840] gi|161335181|gb|ABX61486.1| peptidase S49 [Brucella canis ATCC 23365] gi|163673401|gb|ABY37512.1| peptidase S49 [Brucella suis ATCC 23445] gi|255999010|gb|ACU47409.1| protease IV, putative [Brucella microti CCM 4915] Length = 368 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64 L ++ + + + G I +E+ D Sbjct: 75 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 134 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122 A A+ +S++SPGG+ I+R I+ + +++K V V ++AAS GY+I+ A + I+ Sbjct: 135 HAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 194 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +S+VGSIGV+ L K+GV + + K PF + ++ ++ + Sbjct: 195 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 254 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + F+ +V E R L G WTG A +GLID +G + Y Sbjct: 255 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 311 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291 K+K P + L + + S + + GL A+W Sbjct: 312 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 363 >gi|145225602|ref|YP_001136280.1| signal peptide peptidase SppA, 67K type [Mycobacterium gilvum PYR-GCK] gi|145218088|gb|ABP47492.1| signal peptide peptidase SppA, 67K type [Mycobacterium gilvum PYR-GCK] Length = 595 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 119/290 (41%), Gaps = 32/290 (11%) Query: 34 NSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALIVSLSSPG 77 N +A + + G I + + + DD A++V + SPG Sbjct: 300 NRRRIAVVTVHGPIVSGRGGRQMSPRGGSNAGGDTIAAALREAAADDDVAAIVVRVDSPG 359 Query: 78 GSAYAGEAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GS A E I+R + + + + + +AAS GY +S A++ IVA ++ GSIGV+ Sbjct: 360 GSVTASETIWREVVRARESGTPVVASMGSVAASGGYYVSMAADAIVANPATITGSIGVVT 419 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + ++LGV SV+++ S + + + D Y FV V+E Sbjct: 420 GKLVARDLKERLGVGSDSVRTNANADAWSINAPFTEEQHAQVAAEADLFYDDFVARVAEG 479 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R + D ++ GR+WTGA+A GL+D +GG AL K++ P Sbjct: 480 RGLSVDAVEKVARGRVWTGADALDRGLVDELGGLRTAVTRAKALAGIDEDTKVELQMLPG 539 Query: 257 NYWFCDLK----NLSISSLLEDTIPLMK-----------QTKVQGLWAVW 291 L+ + ++ L + + + Q + G+ A+W Sbjct: 540 ASLRDVLRPKPSSQPAAASLPELLGALAIQSVAGVVDQTQRSLSGVNALW 589 Score = 93.5 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 85/231 (36%), Gaps = 2/231 (0%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79 + + + VA ++ G+ +E + + R + D LI + + Sbjct: 34 ILELDLQSAPPESAGFDPVALLSGAGRPLLLREAVSALHRAAEDPRVAGLIARVQIDAAA 93 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A + + AI +KP + + Y ++ A + + +G +G Sbjct: 94 PGAVQELREAIVAFTAKKPSLAWAETYPGTLSYYLASAFGEVWMQPSGTLGLVGFATNAL 153 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESR 197 +++ LDKLGV + + K+ P+ F+E + +V+ V+ SR Sbjct: 154 FLRDALDKLGVEAQFIAKGEYKSAPNLFTEDRYTEPHREADTALVNGLRTQVWDAVAASR 213 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 I L+D +A GLID VG ++E + + + + Sbjct: 214 GIDVATLDALADRAPLLRDDAVTAGLIDRVGFRDEAYARIADMAGADGVSP 264 >gi|163867860|ref|YP_001609064.1| protease [Bartonella tribocorum CIP 105476] gi|161017511|emb|CAK01069.1| protease [Bartonella tribocorum CIP 105476] Length = 282 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 62/285 (21%), Positives = 118/285 (41%), Gaps = 18/285 (6%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATAL 69 + V+ N + + ++G I DS + +E+ + + Sbjct: 1 MIDVLKNFIQRRFSSNKFEIPVVRLKGAIMDSSSISRTLSLSRCANLLEKAFAHKKSPVV 60 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 + ++SPGGS IF+ I+ + + K V+ + ++AAS GY+I+CA + I A +S Sbjct: 61 ALIINSPGGSPVQSRFIFKRIRDLAEEKNKKVLVFIEDIAASGGYMIACAGDEIFADPSS 120 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 +VGSIGV+ L K+GV + + K PF ++ ++ + + Sbjct: 121 IVGSIGVVSASFGFPELLKKIGVERRVYTAGKNKVTLDPFQPEKKADIEHLKSLQLEVHQ 180 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F+ LV E R L G W+G ++ ++GLID + V + + S Sbjct: 181 TFIDLVKERRATKLSDDSNLFTGMFWSGKKSVELGLIDGLNDVRSVIKERFG-----SDA 235 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 K++ PPK++ + + + + + A+W Sbjct: 236 KLRLITPPKSFLGFKAPSGVTAHTVYTAVDSALMAAEE--RALWQ 278 >gi|329851486|ref|ZP_08266243.1| signal peptide peptidase SppA, 67K type [Asticcacaulis biprosthecum C19] gi|328840332|gb|EGF89904.1| signal peptide peptidase SppA, 67K type [Asticcacaulis biprosthecum C19] Length = 593 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 71/292 (24%), Positives = 124/292 (42%), Gaps = 22/292 (7%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIED---------------SQELIERIERISRD 63 +++ +S + + +A I G I S ++ E +D Sbjct: 274 VMSLADYSRTLAPDSKGETIAIIDGEGAIMTGKGGGGGFGSQKMMMSDDVSEAFYTAIKD 333 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIV 122 A++ +SSPGGS A I A++ + KPV+ + + AAS GY I+ ++ IV Sbjct: 334 PKVKAIVFRVSSPGGSDTASAQIAEAMKDAKEAGKPVVVSMGDYAASGGYWIASGASAIV 393 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSI-KSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 A ++L GSIGV + L + GV I S +P + Sbjct: 394 ANPSTLTGSIGVFGGKFAIGDALARFGVDIKDIHVGGDYTEVFSEAKGFSPTQRAALSSW 453 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 +D Y+ F+ V+ RN+P DK L+ GR+WTGA+A + L+D GG + +L Sbjct: 454 IDQIYNSFITHVAAGRNLPEDKVRELAKGRVWTGAQAVEHRLVDKAGGFYAAVDTAKSLA 513 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 + +++ P +S+ ++ ++ +K G WA+ +P Sbjct: 514 KIDASAQVRLVRYPSKP----SMFGGVSNSVQMSLTGLKTLSFLG-WAMSDP 560 Score = 80.8 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 84/218 (38%), Gaps = 7/218 (3%) Query: 43 IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102 + G + E++ + R + D A+ + L G S A E I AI V+ + Sbjct: 64 LTGSTLSTVEVVTTLHRAADDPKVKAVFMRLPEGGMSPAAAEEIREAIIYVRRASKPVIA 123 Query: 103 VHEMAASA-----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + Y++ +S+ + S G+ + K DK G+S + + Sbjct: 124 HSQGLYPSGMVISSYMLGASSSELWMQPRSSFQVTGISSSEMFFKDAFDKYGISAQYEQR 183 Query: 158 SPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215 + K +P+ ++ P+ + + S Y + ++ R + + + Sbjct: 184 AEFKNAVNPYLYNDFTPEHREATLSWMGSIYQSMIGNIASDRRLDKTVVQTTLEAGPYGA 243 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 +A ++GLI +G + Q+ G + + + D++ Sbjct: 244 EKALELGLITHLGQVHDAEQAALKRGTNAKVMSLADYS 281 >gi|325262473|ref|ZP_08129210.1| peptidase, U7 family [Clostridium sp. D5] gi|324032305|gb|EGB93583.1| peptidase, U7 family [Clostridium sp. D5] Length = 335 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 65/272 (23%), Positives = 125/272 (45%), Gaps = 20/272 (7%) Query: 34 NSPHVARIAIRGQIEDSQ--------------ELIERIERISRDDSATALIVSLSSPGGS 79 P+V +++ G IE L++ I+ + D + + +++ + SPGG+ Sbjct: 60 TEPYVGIVSVYGTIEPQTRTGTFDQPQSYQHLALMDYIDAMMYDPNNSGILLDVDSPGGT 119 Query: 80 AYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 Y G ++ I + ++ +PV T ++ ASA Y I+ S+ I A ++++ GSIGV+ Sbjct: 120 TYEGVELYDKIVEYRDATGRPVWTYMNHYGASAAYYIAAPSDRIGANKSTMTGSIGVIMS 179 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + +KLG+ SV + K SP N + +++ QD++ Y FV V+E R Sbjct: 180 GYDLSGLYEKLGIKYYSVTTGDNKDMSSP----NEEQLEIYQDIIAEEYDRFVGAVAEGR 235 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 +P L+DGR ++ +A GLID + E++ + + + + PP Sbjct: 236 GMPDKAVRELADGRPYSAQQAVDNGLIDEITTFEDLAVEMQYEVGNTTFYQPDIIEPPLA 295 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 F + + S ++ L ++ L + Sbjct: 296 SLFGKAEEILPKSDMQVLSELTEKYGSGVLMS 327 >gi|296137880|ref|YP_003645123.1| peptidase S49 [Tsukamurella paurometabola DSM 20162] gi|296026014|gb|ADG76784.1| peptidase S49 [Tsukamurella paurometabola DSM 20162] Length = 306 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 67/288 (23%), Positives = 114/288 (39%), Gaps = 33/288 (11%) Query: 29 SHVEDNSPHVARIAIRGQIE--------DSQELIER------IERISRDDSATALIVSLS 74 S + V + + G I S+ ++ + + D A A+ ++L+ Sbjct: 21 SALGQAGGVVPVVRLEGPIAAPALSGGLSSRGVLNLAGVETVLRKAFETDDAVAVALALN 80 Query: 75 SPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 SPGGS E I I+++ + PV+ ++AAS GY ++CA++ I TS+VGSI Sbjct: 81 SPGGSPAQSELIGARIRQLAEKHDLPVLAFCEDVAASGGYWLACAADEIFVTSTSIVGSI 140 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GV+ K ++K+G+ + + K F +V V+ + V + F Sbjct: 141 GVISASFGAKDLIEKIGLERRVFTAGESKHRLDMFEDVREADVEWLHGVQGDIHSAFRTW 200 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 V+E R L G +W GA+A ++GL D VG L +I+ Sbjct: 201 VTERRGARLGDDPALFTGEVWIGAKAVELGLADGVGTLR------GTLADRFPEAEIETM 254 Query: 253 NPPKNYWFCDLKNLSI-----------SSLLEDTIPLMKQTKVQGLWA 289 + PK L + + + +GLWA Sbjct: 255 HTPKPLLARLLSGGTSIADGGLAGAAAALTTGALDGALSGLHRRGLWA 302 >gi|126463497|ref|YP_001044611.1| peptidase S49 [Rhodobacter sphaeroides ATCC 17029] gi|126105161|gb|ABN77839.1| peptidase S49 [Rhodobacter sphaeroides ATCC 17029] Length = 265 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 64/258 (24%), Positives = 110/258 (42%), Gaps = 14/258 (5%) Query: 34 NSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 P V I ++G I Q L IE+ R + + ++SPGGS I Sbjct: 10 KDPVVPVIRLQGVIASGPRGGLSDQGLAAVIEKAFRRGKPAGVALVINSPGGSPVQSSLI 69 Query: 87 FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I+++ + K V V ++AAS GY ++CA + I E+SLVGSIGV+F F Sbjct: 70 AARIRRLASEKGVRVHAFVEDVAASGGYWLACAGDEIWVDESSLVGSIGVIFSSFGFHEF 129 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + + G+ + + K+ PF P+ V+ ++ + + + F+ V R D Sbjct: 130 MARNGIERRVHTAGRSKSLADPFLPEKPEDVERLKALQEPIHRAFIEHVKRHRGARLDLN 189 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 L + +WTG EA ++GL D V Q +Y ++ + + + Sbjct: 190 ADLFNADVWTGQEAVRLGLADGVAHLVPKLQEIYG-----DKVRLVPYGQRRPFLQRLGM 244 Query: 265 NLSISSLLEDTIPLMKQT 282 +L+ +L E + Sbjct: 245 SLAGQALAEVENRALWAR 262 >gi|19704606|ref|NP_604168.1| protease IV [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714902|gb|AAL95467.1| Protease IV [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 565 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 14/236 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLS 74 + D++ V I + G I +SQ E +E++ ++ A+++ ++ Sbjct: 282 EGSMVDSNNIVYVIPLEGDIVESQTEVFSGEENINVSETLEKLNIAKENNKVKAVVLRVN 341 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGGSA + I + ++++ KPV + +AAS GY IS ++ I ++ GSIGV Sbjct: 342 SPGGSALTSDIIAKKVKELAEEKPVYVSMSSVAASGGYYISTNAHKIFVDRNTITGSIGV 401 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + P + GV+I+ + S S K + + Y F+ +VS Sbjct: 402 VSILPDFSKLITDNGVNIEKISDGEYSDLYSADS-FTEKKYNKIYNSNLKVYEDFLSVVS 460 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 + R I +K +++GRIWTG EA K+GL D +GG E ++ + Sbjct: 461 KGRRIDKEKLKTIAEGRIWTGDEAIKIGLADEIGGLNETIYAIAEDNNMDEYGIVI 516 Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 10/210 (4%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASA 110 L++ IE IS DD +I+ L+ S E + I + K +I + Sbjct: 71 TLLQSIEAISYDDRVEGIILKLNGDSLSYAQSEELAHEISMARAANKKIIAYFENVGRKN 130 Query: 111 GYLISCASNIIVAAETSLVGSIGVLF-QYPYVKPFLDKLGVSIKSVKSSPMKAEPS--PF 167 YL S A+ I + + S +I F + Y+K DK GV + K+ Sbjct: 131 YYLASYANEIYMPSANSTNVNIYPYFKENFYIKGLADKFGVKFNIIHVGDYKSYMENLAS 190 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEA--KKVGLI 224 + ++ +A + V+D +Y+ F+ +VS +R I + + DG + + A LI Sbjct: 191 NTMSKEAKEDTVRVLDKNYNNFLDVVSLNRKINREDLDKIIKDGELVAASSADLMNNNLI 250 Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 D + V + G I I+++ Sbjct: 251 DKYVYWDNVISMV---GGKDKIITIQEYAK 277 >gi|83952481|ref|ZP_00961212.1| peptidase, family S49 [Roseovarius nubinhibens ISM] gi|83836154|gb|EAP75452.1| peptidase, family S49 [Roseovarius nubinhibens ISM] Length = 280 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 107/259 (41%), Gaps = 19/259 (7%) Query: 34 NSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + P VA + + G I + + I++ A+ + ++SPGGS I Sbjct: 23 SRPRVAVVRLAGTIGSGPRAALSDEAIGPVIDKAFARGKPKAVALVINSPGGSPVQSALI 82 Query: 87 FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I+++ K PV V ++AAS GY ++ A++ I S++GSIGV+ F Sbjct: 83 AARIRRLSEEKGVPVHAFVEDVAASGGYWLAVAADDIWVDYGSILGSIGVISAGFGAHVF 142 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L + G+ + + K+ PF + V ++ ++ + F+ V R + Sbjct: 143 LARQGIERRVYTAGESKSTLDPFQPEKKEDVARLESLLAQMHTGFIDHVKARRGDKLSRD 202 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 L G W G +A ++GL D E + LY K+ + K + Sbjct: 203 EKLFTGEFWIGRQAVELGLADGEAHLEPKLKELYG-----DKVKLLRYGRKKGLFQRF-- 255 Query: 265 NLSISSLLEDTIPLMKQTK 283 +S++ED + +++ Sbjct: 256 ---GASVVEDALIAVEERA 271 >gi|317503476|ref|ZP_07961513.1| signal peptide peptidase SppA [Prevotella salivae DSM 15606] gi|315665427|gb|EFV05057.1| signal peptide peptidase SppA [Prevotella salivae DSM 15606] Length = 588 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 68/265 (25%), Positives = 122/265 (46%), Gaps = 17/265 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIED---SQELIERIERISRDD------------SATALIV 71 + + H+A G I D Q + + +I +D A+++ Sbjct: 289 NDDEEQVSGKHIAVYYAYGDIVDKASPQSIFQDARQIVGNDMCKDLKDLADDDDVEAVVI 348 Query: 72 SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 ++S GGSAYA E I+ I +++ KPV+ + AAS GY +SC ++ I+A T++ GS Sbjct: 349 RVNSGGGSAYASEQIWHQISELRKVKPVVVSMGGAAASGGYYLSCNADWIIADPTTITGS 408 Query: 132 IGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 IG+ +P L KLG+ VK++ + P+ + ++Q ++ Y F Sbjct: 409 IGIFGLFPDWSELLTKKLGIKYAEVKTNRNAVFGASGHPFTPEQLSLLQQNINRGYMLFK 468 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 + V+E R +P ++ GR+W G +A K+ LID +GG ++ + L K Sbjct: 469 KRVAEGRQLPMYLVEKIAQGRVWLGQDAIKLKLIDQLGGLDDAIEKAAKLANLTD-YKTA 527 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDT 275 + + W + + + S L D+ Sbjct: 528 SYPSQLSSWEQLIGSYTGSDDLLDS 552 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 37/261 (14%), Positives = 90/261 (34%), Gaps = 21/261 (8%) Query: 14 MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------------QELIER 56 ++ + L + + S+ + + V + + G + + + + Sbjct: 24 IIGFLCLIGLIATSSTTTKIDKNSVLVLKLDGNMTEQNEENVMNSLQGVSTLSFEGTMNA 83 Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116 I++ +D + + G E I +A+Q + I E ++ Y ++ Sbjct: 84 IKKAKENDKVAGIYLEAGQFGADLAQAEEIEKALQDFRKSGKWIIAYGEDYSTLSYYLAS 143 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKA 174 A+N I + V G+ + Y K L K G+ + K K+ E ++ Sbjct: 144 AANKIYMNKQGGVEWAGIGGEKVYYKNALAKFGIKFITTKVGKYKSAVEQMTADSISDAD 203 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI--WTGAEAKKVGLIDVVGGQEE 232 + Q +D ++ + V+++R++ D +D I K ++D + ++ Sbjct: 204 REQTQRYLDGWWNTILTTVAQNRHLNKDSLNAYADRVISLEPAENILKYKMVDGLIYNDD 263 Query: 233 VWQSLYALGVDQSIRKIKDWN 253 + + I Sbjct: 264 ISGVVKKQLGIDQDDDINKIT 284 >gi|315445955|ref|YP_004078834.1| signal peptide peptidase SppA, 67K type [Mycobacterium sp. Spyr1] gi|315264258|gb|ADU01000.1| signal peptide peptidase SppA, 67K type [Mycobacterium sp. Spyr1] Length = 595 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 119/290 (41%), Gaps = 32/290 (11%) Query: 34 NSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALIVSLSSPG 77 N +A + + G I + + + DD A++V + SPG Sbjct: 300 NRRRIAVVTLHGPIVSGRGGRQMSPRGGSNAGGDTIAAALREAAADDDVAAIVVRVDSPG 359 Query: 78 GSAYAGEAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GS A E I+R + + + + + +AAS GY +S A++ IVA ++ GSIGV+ Sbjct: 360 GSVTASETIWREVVRARESGTPVVASMGSVAASGGYYVSMAADAIVANPATITGSIGVVT 419 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + ++LGV SV+++ S + + + D Y FV V+E Sbjct: 420 GKLVARDLKERLGVGSDSVRTNANADAWSINAPFTEEQHAQVAAEADLFYDDFVARVAEG 479 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R + D ++ GR+WTGA+A GL+D +GG AL K++ P Sbjct: 480 RGLSIDAVEQVARGRVWTGADALDRGLVDELGGLRTAVTRAKALAGIDEDTKVELQMLPG 539 Query: 257 NYWFCDLK----NLSISSLLEDTIPLMK-----------QTKVQGLWAVW 291 L+ + ++ L + + + Q + G+ A+W Sbjct: 540 ASLRDVLRPKPSSQPAAASLPELLGALAIQSVAGVVDQTQRSLSGVNALW 589 Score = 93.5 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 85/231 (36%), Gaps = 2/231 (0%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79 + + + VA ++ G+ +E + + R + D LI + + Sbjct: 34 ILELDLQSAPPESAGFDPVALLSGAGRPLLLREAVSALHRAAEDPRVAGLIARVQIDAAA 93 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A + + AI +KP + + Y ++ A + + +G +G Sbjct: 94 PGAVQELREAIVAFTAKKPSLAWAETYPGTLSYYLASAFGEVWMQPSGTLGLVGFATNAL 153 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESR 197 +++ LDKLGV + + K+ P+ F+E + +V+ V+ SR Sbjct: 154 FLRDALDKLGVEAQFIAKGEYKSAPNLFTEDRYTEPHREADTALVNGLRTQVWDAVAASR 213 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 I L+D +A GLID VG ++E + + + + Sbjct: 214 GIDVATLDALADRAPLLRDDAVTAGLIDRVGFRDEAYARIADMAGADGVSP 264 >gi|83310697|ref|YP_420961.1| periplasmic serine protease [Magnetospirillum magneticum AMB-1] gi|82945538|dbj|BAE50402.1| Periplasmic serine protease [Magnetospirillum magneticum AMB-1] Length = 582 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 68/268 (25%), Positives = 117/268 (43%), Gaps = 17/268 (6%) Query: 37 HVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 VA I+ G I SQ + E DD+ ++ + SPGGS A Sbjct: 298 KVALISGIGAIHRGESHHGLDGDGDFGSQTVAEAFRDAVDDDAVKVILFRVDSPGGSYIA 357 Query: 83 GEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + + +++ + K V+ + AAS GY ++ ++ I+AA ++ GSIGV + Sbjct: 358 SDTVHHEVERARKAGKKVVVSMGNYAASGGYFVAMGADRIIAAPGTITGSIGVFTGKVVL 417 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 F KLG+S + S + +A + ++D Y F S +RN+ Sbjct: 418 DEFWKKLGISWDEMHRGDNAGMWSANQPFSSQAKARIDTLLDHIYADFTGKASAARNLDA 477 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ--SIRKIKDWNPPKNYW 259 + L+ GRIWTGA+AK+ GL+D +GG E + +G + + ++ P+ W Sbjct: 478 ARMDKLARGRIWTGADAKQSGLVDGLGGWAEALSQVRQVGGLKVDETLTLVEFPRPRKPW 537 Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQGL 287 ++L S+ E I + + L Sbjct: 538 QVLAESLGGGSVAERRILARIEPLLDVL 565 Score = 79.3 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 83/206 (40%), Gaps = 7/206 (3%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 ++++E ++R + D + + +L + + A+ + + E Sbjct: 76 GLRQVVEALDRAAADSRVSGVFATLGHSPLGLAGRQDLRDAVARFRASGKPAVLFAETLG 135 Query: 109 SA-----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 Y ++ A + + + VG G+ + P++K LD LG+ + K+ Sbjct: 136 EGGSGTLDYYLATAFSQVWLQPSGDVGLTGLWVESPFIKGTLDLLGIKAQFSGRHEYKSA 195 Query: 164 PSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221 F+E P + + ++DS V ++ +R +P + L + +EA Sbjct: 196 IDMFTETGFTPAHRENLGRLLDSWSEQIVAGIAAARGLPEPQVRELMGKGPFLASEALAA 255 Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIR 247 L+D VG ++E W + +G D++ Sbjct: 256 RLVDKVGYRDEAWGMIAGIGKDKAEE 281 >gi|56698460|ref|YP_168834.1| S49 family peptidase [Ruegeria pomeroyi DSS-3] gi|56680197|gb|AAV96863.1| peptidase, family S49 [Ruegeria pomeroyi DSS-3] Length = 281 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 66/282 (23%), Positives = 119/282 (42%), Gaps = 19/282 (6%) Query: 11 RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRD 63 R + + T + + + P VA + + G I + L +ER R Sbjct: 3 RVLFVGRARSTSAAMTLALPFKKKPPLVAVVRLSGAIGLAGRGALNDTTLAPMLERAFRK 62 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNII 121 A+ + ++SPGGS I I+++ PV V ++AAS GY ++CA++ I Sbjct: 63 GKPAAVALEINSPGGSPVQSSLIGARIRRLAAEHKVPVYAFVEDVAASGGYWLACAADEI 122 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 A ++S++GSIGV+ FL + G + + K+ PFS + V ++ + Sbjct: 123 WADDSSVLGSIGVISASFGAHVFLARQGFERRVHTAGKSKSMLDPFSPEKKEDVTRLKGL 182 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 + + F+ V E R D T L G +W GA A+ +GLID + + Q + Sbjct: 183 LGDIHQNFISHVKERRGDRLDATEDLFTGEVWLGARARDLGLIDGIAHLKPKMQERFG-- 240 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 + + + + +W L ED + +++ Sbjct: 241 ---DKVRFRRYGVRRPFWSRF-----GVHLAEDALAGIEERA 274 >gi|297734121|emb|CBI15368.3| unnamed protein product [Vitis vinifera] Length = 425 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 64/272 (23%), Positives = 113/272 (41%), Gaps = 17/272 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSL 73 W+ + +A I G I S++ IE+I + A+I+ + Sbjct: 114 WTLGLSGGKDQIAVIRASGSISRVRSPFSIPGSGITSEQFIEKIRSVRDSKRYKAVIIRI 173 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 SPGG A A + ++R I+ + KPVI + ++AAS GY ++ + IVA +L GSIG Sbjct: 174 DSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGTIVAENLTLTGSIG 233 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP-FSEVNPKAVQMMQDVVDSSYHWFVRL 192 V+ + +K+G + + + + P ++ ++Y F Sbjct: 234 VVTGKFNLGTLYEKIGFNKEIISRGRFAELTAAEQRPFRPDEAELFAKSAQNAYKQFRDK 293 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--K 250 + SR++ DK + GR+WTG +A GL+D +GG R + Sbjct: 294 AAFSRSMAVDKMEENAQGRVWTGKDAASRGLVDAIGGLSRAVAIAKQKADIPQDRPVTLV 353 Query: 251 DWNPPKNYWFCDLKNLSISS-LLEDTIPLMKQ 281 + + P L + S +E T+ + Q Sbjct: 354 ELSRPSPTVSEILTGIGSSIVGVERTLKELLQ 385 >gi|260576443|ref|ZP_05844433.1| peptidase S49 [Rhodobacter sp. SW2] gi|259021326|gb|EEW24632.1| peptidase S49 [Rhodobacter sp. SW2] Length = 266 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 63/276 (22%), Positives = 113/276 (40%), Gaps = 28/276 (10%) Query: 27 WSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPG 77 + P VA I + G I + L IER A+ + ++SPG Sbjct: 3 IRNPFAVQPPWVAVIRLSGAIGAGGRTGAGLSDEALAPVIERAFSRGKPKAVALVINSPG 62 Query: 78 GSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 GSA I I+++ K PV V ++AAS GY ++CA++ I ++S+VGSIGV+ Sbjct: 63 GSAVQSSLIAARIRRLSKEKKVPVHAFVEDVAASGGYWLACAADHIWVDDSSIVGSIGVI 122 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 F + + GV + + K+ PF P+ + + + F+ V Sbjct: 123 FASFGFPELMKRQGVERRVHTAGRSKSLADPFLPEKPEDAARLLALAAPIHQAFIAHVKA 182 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 R + L + +W G +A +GL D V ++LY VD + + Sbjct: 183 RRGARLAEAD-LFNADVWVGQQAVDLGLADGVAHLVPKLKALYGDKVD-----LVPYGRR 236 Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 ++ + + ++ D + +++ A+W Sbjct: 237 RSLFQRF-----GARMVGDALAEVEER------ALW 261 >gi|88811815|ref|ZP_01127068.1| protease IV [Nitrococcus mobilis Nb-231] gi|88790699|gb|EAR21813.1| protease IV [Nitrococcus mobilis Nb-231] Length = 614 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 61/215 (28%), Positives = 110/215 (51%), Gaps = 10/215 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSL 73 + S +D V I + G I D + + ++I RD ALI+ + Sbjct: 306 LQASGGLQADDQPGKVGLITMEGPIADGESRPGIVGGDTIAQQIRDARRDHGIAALILRV 365 Query: 74 SSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 +SPGGSA A E + R + + KPV+ + +AAS GY + +N I A ++L GSI Sbjct: 366 NSPGGSATASEVVRREVAATRQAGKPVVVSMSAVAASGGYWAAMNANQIWAQASTLTGSI 425 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 G+ P V+ L+KLG+ V + + ++P+ +++Q V++ Y F+ Sbjct: 426 GIFGLLPNVQTTLEKLGIHPDGVGTHALTGALRADRPLSPEGARLVQLVIEQGYQRFIHR 485 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 V+++R + + ++ GR+W+G +AK++GL+D + Sbjct: 486 VAQARGMSVEAVDRIAQGRVWSGRDAKRLGLVDHL 520 Score = 76.2 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 75/205 (36%), Gaps = 11/205 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 ++L+ + R + D T ++ L + + AI+ + + + Sbjct: 87 RDLLVALRRGASDSRITLAVLQLDELQQAGMAQLQELGGAIRDFRASGKKVIAYAQSYTQ 146 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS- 168 Y ++ ++ + V G Y + LD+LGV + + KA PF Sbjct: 147 LQYYLAALADKVYLDPLGAVLLQGFGVYQHYFRDALDELGVKVHVFRVGQYKAAVEPFMR 206 Query: 169 -EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW--------TGAEAK 219 +++P+A + + + + + V+ SR +P D T A A+ Sbjct: 207 NDMSPQARRENLIWLHTLWDVYKSDVAHSRGLPPSAIDRYIDNLPVELAAHDGDTAALAR 266 Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQ 244 GL+D + E+ L ++ + Sbjct: 267 SAGLVDKLVTPAELRAELASIVGED 291 >gi|84515710|ref|ZP_01003071.1| peptidase, family S49 [Loktanella vestfoldensis SKA53] gi|84510152|gb|EAQ06608.1| peptidase, family S49 [Loktanella vestfoldensis SKA53] Length = 263 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 59/262 (22%), Positives = 112/262 (42%), Gaps = 18/262 (6%) Query: 30 HVEDNSPHVARIAIRGQIE------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 ++P VA I ++G I D L IE+ A+ + ++ PGGS Sbjct: 5 PFTKSAPFVAVIRLQGAISNSGRGLDDPGLAPVIEKAFSKGKPAAVALEINCPGGSPVQS 64 Query: 84 EAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 I I+++ + K PV V ++AAS GY ++CA++ I S+ GSIGV+ Sbjct: 65 SLIASRIRRLADEKKIPVFAFVEDVAASGGYWLACAADEIFIDACSITGSIGVISAGFGA 124 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 +D+ G+ + + K+ PF NP V+ ++ +D + F+ V R + Sbjct: 125 HEAIDRYGIERRVHTAGKSKSLLDPFKPQNPADVKKLKGWLDDLHATFIAYVKSRRGLKL 184 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 L G ++ G + GL+D +G V ++ + K + + K Sbjct: 185 SDDPDLFTGEVYIGQKGIDAGLVDGIGHLAPVMKARFG-----DKVKFRRYGQRKPLLAR 239 Query: 262 DLKNLSISSLLEDTIPLMKQTK 283 + +++D+I ++++ Sbjct: 240 F-----GAQIVDDSIAVIEERA 256 >gi|254562274|ref|YP_003069369.1| protease SohB, belong to MEROPS peptidase family S49 [Methylobacterium extorquens DM4] gi|254269552|emb|CAX25518.1| protease SohB, belong to MEROPS peptidase family S49 (protease IV family, clan S-) [Methylobacterium extorquens DM4] Length = 286 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 69/273 (25%), Positives = 117/273 (42%), Gaps = 19/273 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSA 80 + P VA + + G I + +ER +A+ + ++SPGGS Sbjct: 16 RFRETPPRVAVVRLSGAIGAVSPIRPGLSIGTVAPSLERAFTMPGLSAVALVINSPGGSP 75 Query: 81 YAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 I+R I+ + K + V + AAS GY+I+CA++ IVA SLVGSIGV+ Sbjct: 76 VQSHLIYRRIRALAAEKEIKVFAFVEDAAASGGYMIACAADEIVADPASLVGSIGVVSAG 135 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 ++++G+ + KA PF NP+ + ++++ F LV E R Sbjct: 136 FGFDRLIERIGIDRRVHTQGEAKAMLDPFRPENPQDIARLKEIQADVQALFSGLVRERR- 194 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 D + L G +WTG +A +GL+D +G ++ Y VD ++ + Sbjct: 195 PTLDASRDLFTGAVWTGRQALDLGLVDALGDLRGTLRARYGEKVD-----LRLVAENRGS 249 Query: 259 WFCDLKNLSISSLLEDTIP--LMKQTKVQGLWA 289 W L + +P L+ + + WA Sbjct: 250 WLARLLRRAGPGQTTAGLPDALIAAVEERAAWA 282 >gi|52549671|gb|AAU83520.1| protease IV [uncultured archaeon GZfos30H9] Length = 251 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 111/242 (45%), Gaps = 12/242 (4%) Query: 33 DNSPHVARIAIRGQIEDSQE----------LIERIERISRDDSATALIVSLSSPGGSAYA 82 +A I I+G I + LI+ IE A++ ++SPGG+ +A Sbjct: 7 KEKGSIAIIPIKGMITSEESGFGLMAASTVLIKDIEEAEIKRKIKAVLFEINSPGGTPFA 66 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + I I+ + KP I V E AAS Y I+ A + IVA E S VGSIG + P + Sbjct: 67 SKEIATCIENM--DKPAIAWVREYAASGAYWIASACDEIVADELSTVGSIGAMSIRPDIG 124 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 + K G+ ++++++ K P+ ++ + ++M+ +D F+ V+++R + Sbjct: 125 ELMKKFGIEVETLRTGIYKGLGLPYEKLTEEERELMKKELDEIQDNFLNAVAKNRKLDDV 184 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 K LS +++ G EAK +GLID +GG+E + + + + + Sbjct: 185 KMKELSTAKVYLGREAKDMGLIDHLGGKELAIRIAKERSGIRKEKIVDYGERKRKGLLRR 244 Query: 263 LK 264 Sbjct: 245 AM 246 >gi|49475218|ref|YP_033259.1| protease sohB [Bartonella henselae str. Houston-1] gi|49238023|emb|CAF27229.1| Protease sohB [Bartonella henselae str. Houston-1] Length = 283 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 62/286 (21%), Positives = 118/286 (41%), Gaps = 19/286 (6%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIER----------IERISRDDSATA 68 + + + + + + G I DS I R +++ A A Sbjct: 1 MVNFIKNFIPHRFYSSKTEIPVVRLHGAIIDSSSSIARTLSLGRCANLLDKAFAYKKAPA 60 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 + V ++SPGGS IF+ I+ + + +K V+ + ++AAS GY+I+CA + I A + Sbjct: 61 VAVIINSPGGSPVQSRLIFKRIRDLAEEKKKQVLMFIEDIAASGGYMIACAGDEIFADPS 120 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 S+VGSIGV+ L K+G+ + + K PF ++ ++ + + Sbjct: 121 SIVGSIGVVSASFGFPELLKKIGIERRVYTAGKNKVTLDPFQPEKKTDIEHLKSLQLEVH 180 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 F+ LV E R + G W+G ++ ++GLID + V + + Sbjct: 181 KTFIDLVKERRAEKLSNDPNIFTGMFWSGKKSVELGLIDGLNDVRSVIKERFG-----DD 235 Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 K++ PPK+ + + + + I + A+W Sbjct: 236 TKLRLIIPPKSLFGPKTPSGVTAHAVHTAIDSALMVAQER--ALWQ 279 >gi|52548349|gb|AAU82198.1| protease IV [uncultured archaeon GZfos11H11] Length = 251 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 111/239 (46%), Gaps = 12/239 (5%) Query: 33 DNSPHVARIAIRGQIEDSQE----------LIERIERISRDDSATALIVSLSSPGGSAYA 82 + +A I I+G I + +I+ IE + +I ++SPGG+ +A Sbjct: 7 KENGSIAIIPIKGMITSEESVFGLMAASTLIIKDIEEVENKRKIKTVIFEINSPGGTPFA 66 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + I I+ + KP I V E AS Y I+ A + IVA E S VGSIG + P + Sbjct: 67 SKEIATCIENM--DKPAIAWVREYGASGAYWIASACDEIVADELSTVGSIGAMSIRPDIG 124 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 + K G+ ++++++ K P+ + + ++M+ +D F+ V+++R + Sbjct: 125 ELMKKFGIDVETLRTGIYKGMGLPYEKPTEEERELMKKELDEIQDNFLNAVAKNRKLDDA 184 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 K LS +++ G EAK++GLID +GG+E + + + + + Sbjct: 185 KMKELSTAKVYLGREAKEMGLIDHLGGKELAIRIAKERSGIRKEKIVDYGERKRKGLLR 243 >gi|109898682|ref|YP_661937.1| signal peptide peptidase SppA, 67K type [Pseudoalteromonas atlantica T6c] gi|109700963|gb|ABG40883.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Pseudoalteromonas atlantica T6c] Length = 620 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 66/264 (25%), Positives = 119/264 (45%), Gaps = 12/264 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSL 73 + H+ V + +G I E + + DDS ++++ + Sbjct: 317 IVNPPLPHLNTGIDKVGVVVAKGTILNGEQKPGTVGGDSTAELLRKARLDDSIKSVVLYV 376 Query: 74 SSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 SPGGSA+A E I + I+ +K KPV+ + AAS GY IS +++ I AA +++ GSI Sbjct: 377 DSPGGSAFASEIIRQEIENLKAAGKPVVALMSTYAASGGYWISASADEIWAAPSTITGSI 436 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 G+ + + LD LGV V ++ ++PK Q++Q ++ Y F+ L Sbjct: 437 GIFGMFVSFENTLDYLGVHTDGVGTTDFAG-MGITRGIDPKMGQVLQRSIEHGYDQFISL 495 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKD 251 V+E R++ + ++ GR+W G A K+ L+D +G ++ + A + Sbjct: 496 VAEERHMSKESVDNIAQGRVWIGETALKLNLVDHLGYIDDAVSAAAARANLSEYDVTYVE 555 Query: 252 WNPPKNYWFCDLKNLSISSLLEDT 275 + + F + S +L T Sbjct: 556 RSLNSSELFWKELFSNASVVLART 579 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 93/286 (32%), Gaps = 37/286 (12%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------- 50 + F K ++ + + ++F + + + I+G I Sbjct: 19 LNFSRKLFFNLIFLVIAIGIISLFFRDNGQIGVKQDSALVLNIKGDIVIQKHAIDPFEAF 78 Query: 51 ----------------QELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93 Q+++ ++ +D AL++ L G E + +AI Sbjct: 79 MQEALGQANEKPEVLLQDILLTLDNAKQDRRIKALVLDLHELSGAGLDKLEQVAQAIDDF 138 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + + + + Y I+ ++ + + G Y K L+K+ + Sbjct: 139 KLSEKPVYAIGDYYTQEQYYIASHADHVYMNPMGWMLFEGYGRFGMYYKSALEKIKATTH 198 Query: 154 SVKSSPMKAEPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV----- 206 K K+ P +++ A + + ++ + + V+E+R + D Sbjct: 199 VFKVGTYKSAVEPLLRDDMSQPAKEANKAWLNGMWSQYKNSVAEARGLSTDNFDEKVDEF 258 Query: 207 ---LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 D A G +D + +E+V Q L ++ K+ Sbjct: 259 MVKFEDANGDFAQYALDNGWVDGLKTREQVLQELVSVVGKDEDAKL 304 >gi|149912749|ref|ZP_01901283.1| peptidase S49 [Roseobacter sp. AzwK-3b] gi|149813155|gb|EDM72981.1| peptidase S49 [Roseobacter sp. AzwK-3b] Length = 265 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 62/258 (24%), Positives = 106/258 (41%), Gaps = 19/258 (7%) Query: 35 SPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 P V+ I + G I + L IE+ R A+ + ++SPGGS I Sbjct: 11 GPVVSVIRLSGTIGAGSRAQLSDEALAPSIEKAFRRGKPKAVALLINSPGGSPVQSSLIA 70 Query: 88 RAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+++ K PV V ++AAS GY ++ A++ I S+VGSIGV+ L Sbjct: 71 SRIRRLAEEKDIPVHAFVEDVAASGGYWLATAADDIWVDPASIVGSIGVISAGFGAPVLL 130 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 + GV + S K+ PF + V ++D+++ + F V+ R + Sbjct: 131 ARQGVERRVHTSGKSKSFLDPFLPQKDEDVSRLKDILEQMHKVFEAQVTSRRGDKLAQND 190 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L G W G A ++GL+D +G + LY + + + + Sbjct: 191 DLFTGEFWLGQRAVELGLVDGIGHVAPKMKELYG-----DKVRFAQYGRKRGLFQRFGM- 244 Query: 266 LSISSLLEDTIPLMKQTK 283 SL +D I +++ Sbjct: 245 ----SLAQDGIAAIEERA 258 >gi|296329047|ref|ZP_06871553.1| signal peptide peptidase SppA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153851|gb|EFG94663.1| signal peptide peptidase SppA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 589 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 14/236 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLS 74 + D++ V I + G I +SQ E +E++ ++ A+++ ++ Sbjct: 306 EGSMVDSNNIVYVIPLEGDIVESQTEVFSGEENINVSETLEKLNIAKENNKVKAVVLRVN 365 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGGSA + I + ++++ KPV + +AAS GY IS ++ I ++ GSIGV Sbjct: 366 SPGGSALTSDIIAKKVKELAEEKPVYVSMSSVAASGGYYISTNAHKIFVDRNTITGSIGV 425 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + P + GV+I+ + S S K + + Y F+ +VS Sbjct: 426 VSILPDFSKLITDNGVNIEKISDGEYSDLYSADS-FTEKKYNKIYNSNLKVYEDFLSVVS 484 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 + R I +K +++GRIWTG EA K+GL D +GG E ++ + Sbjct: 485 KGRRIDKEKLKTIAEGRIWTGDEAIKIGLADEIGGLNETIYAIAEDNNMDEYGIVI 540 Score = 66.6 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 101/281 (35%), Gaps = 32/281 (11%) Query: 3 FVLKKI-------KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARI----------AIRG 45 FV+K+I ++ ++ + + ++ Sbjct: 24 FVIKEILSFFIKLFLFLFVVGIIISAAIKSFEEKPTVAIKNKAYVLINLADSYNERLLKS 83 Query: 46 QIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPV 99 + + + ++ IE IS DD +I+ L+ S E + I + K + Sbjct: 84 NLFEDDSINFYTLLQSIEAISYDDRVEGIILKLNGDSLSYAQSEELAHEISMARAANKKI 143 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF-QYPYVKPFLDKLGVSIKSVKSS 158 I + YL S A+ I + + S +I F + Y+K DK GV + Sbjct: 144 IAYFENVGRKNYYLASYANEIYMPSANSTNVNIYPYFKENFYIKGLADKFGVKFNIIHVG 203 Query: 159 PMKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTG 215 K+ + ++ +A + V+D +Y+ F+ +VS +R I + + DG + Sbjct: 204 DYKSYMENLASNTMSKEAKEDTVRVLDKNYNNFLDVVSLNRKINREDLDKIIKDGELVAA 263 Query: 216 AEA--KKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + A LID + V + G I I+++ Sbjct: 264 SSADLMNNNLIDKYVYWDNVISMV---GGKDKIITIQEYAK 301 >gi|269123729|ref|YP_003306306.1| signal peptide peptidase SppA, 36K type [Streptobacillus moniliformis DSM 12112] gi|268315055|gb|ACZ01429.1| signal peptide peptidase SppA, 36K type [Streptobacillus moniliformis DSM 12112] Length = 547 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 114/241 (47%), Gaps = 13/241 (5%) Query: 29 SHVEDNSPHVARIAIRGQIED-SQELIERI---------ERISRDDSATALIVSLSSPGG 78 + +S +A I + G+I + S + I E+ + +++ ++SPGG Sbjct: 257 KEINTSSNKIAVIYLDGEITEKSNSTVPYISYSNFEQKFEKAEKTKGIKGIVIRINSPGG 316 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 SA + I+ I+K + PV + +AAS GY IS A N I +SL GSIGV+ Sbjct: 317 SAIEAKQIYNRIRK--SEVPVYISIGNIAASGGYYISSAGNKIFINPSSLTGSIGVVSIM 374 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV-SESR 197 P L+KLG++I V+ SP+ ++ + + Q ++S Y F + ++ Sbjct: 375 PKYSAALNKLGINIDGVEKGKYSNLLSPYKDLTDEERNIYQRKLESIYSEFKNDILKNNK 434 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 + + ++ G+IW G+EA K+ L++ GG ++ +L + I + KN Sbjct: 435 KLTSESLEEVAQGKIWLGSEAIKLNLVNEFGGLQDTINALQEDLKLDNNYNIVNIYSEKN 494 Query: 258 Y 258 Y Sbjct: 495 Y 495 Score = 58.9 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 14/266 (5%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPG 77 + ++ ++ ++ ++ G+ E+ + I+ DD + + L + Sbjct: 17 ILISDIFIPSDDKFTNSIKYI-----EGKNITFSEVYTSLNMIASDDKIQKIFIDLDTTA 71 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA--AETSLVGSIGVL 135 +A E + + K+K I + Y I+ ++ I+ + + + G Sbjct: 72 FTASQLEELEPVLNKIKLSNKKIYAYGSEINNTNYGIATYADEIIVPETQNANIVLTGYS 131 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + Y K DK G ++ + K+ + + ++ + + + ++D F+ Sbjct: 132 NKSMYYKDLFDKYGFKMEVIHVGSHKSFGQNYTRNSISAEEKETLTRILDKRLEQFIEKN 191 Query: 194 SESRNIPYDK-TLVLSDGR--IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 + +R I + L G + +A+ + L+D + +++ + + D + ++ Sbjct: 192 ANARKIKPEIFKEKLLKGEYAYISPEKARDLDLVDQIIFYDDLAKKI--DLKDDNTISLQ 249 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTI 276 +++ K N L+ I Sbjct: 250 NYSEKKIKEINTSSNKIAVIYLDGEI 275 >gi|325660920|ref|ZP_08149547.1| hypothetical protein HMPREF0490_00279 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472427|gb|EGC75638.1| hypothetical protein HMPREF0490_00279 [Lachnospiraceae bacterium 4_1_37FAA] Length = 339 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 67/284 (23%), Positives = 122/284 (42%), Gaps = 21/284 (7%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDS---------------QELIERIERISRDDSAT 67 ++ P++ +A+ G I++ ++ I+R+ D+ Sbjct: 54 ALLGGNTTTLPGEPYIGIVAVEGTIQEQTSSNGIFDTVAGYQHDTTLDYIDRMMEDEKNQ 113 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAE 125 +++ + SPGG+ Y E ++R + K +PV T + AAS GY IS S+ I A Sbjct: 114 GILLRVDSPGGTVYESEELYRKLVAYKEETGRPVWTYMEHYAASGGYYISAPSDKIYANP 173 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 + GSIGV+ + +KLG+ S+ S K S++ + + + Q VD S Sbjct: 174 NTTTGSIGVIMSGYDMSGLYEKLGIRSVSITSGKNKD----MSKLTEEQIAIYQSSVDES 229 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 + FV +V++ R + + ++DGR +T +AK GLID + EE+ +++ + Sbjct: 230 FDRFVEIVADGRKMTEETVREIADGRTYTAKQAKANGLIDEISLYEEMQEAMEQETGCTT 289 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + P F L+ L S E + L Sbjct: 290 FYEPEQGVSPLASLFSKLETLKPKSEAEVLTEWNEDLGSGVLMY 333 >gi|154251181|ref|YP_001412005.1| peptidase S49 [Parvibaculum lavamentivorans DS-1] gi|154155131|gb|ABS62348.1| peptidase S49 [Parvibaculum lavamentivorans DS-1] Length = 300 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 116/275 (42%), Gaps = 18/275 (6%) Query: 33 DNSPHVARIAIRGQIEDSQELIERIE---------RISRDDSATALIVSLSSPGGSAYAG 83 + P VA + + G I SQ L + + A+ + ++SPGGS Sbjct: 22 EPKPVVAVVRLSGTIGPSQPLRGGLNLAAVAAPLEAAFSMRNVKAVALLINSPGGSPVQS 81 Query: 84 EAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 I++ I+ + K PV ++AAS GY+I+CA++ I A E+S+VGSIGV+ Sbjct: 82 SLIYKRIRALAEEKSVPVYAFAEDVAASGGYMIACAADEIYADESSIVGSIGVVSAGFGF 141 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 ++KLGV + + KA PF + V+ ++ + + F +LV +R Sbjct: 142 TGLIEKLGVERRVHTAGESKAMLDPFQPEREEDVRRLEALQLDVHENFKKLVRGARGERL 201 Query: 202 DKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD--WNP---- 254 + G W G A + GLID +G +SL+ V + + W P Sbjct: 202 KADDPAIFSGEFWAGQGAVERGLIDGLGDVRSKMRSLFGENVKLRLVSPRTPWWRPGGGI 261 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + + + L+ + + LW+ Sbjct: 262 ASSRFGGLSEGFGAGFASQIGEGLIAAAERRSLWS 296 >gi|77464657|ref|YP_354161.1| S49 family peptidase [Rhodobacter sphaeroides 2.4.1] gi|77389075|gb|ABA80260.1| Peptidase family S49 [Rhodobacter sphaeroides 2.4.1] Length = 265 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 64/258 (24%), Positives = 110/258 (42%), Gaps = 14/258 (5%) Query: 34 NSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 P V I ++G I Q L IE+ R + + ++SPGGS I Sbjct: 10 KDPVVPVIRLQGVIASGPRGGLSDQGLAAVIEKAFRRGKPAGVALVINSPGGSPVQSSLI 69 Query: 87 FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I+++ + K V V ++AAS GY ++CA + I E+SLVGSIGV+F F Sbjct: 70 AARIRRLASEKGVRVHAFVEDVAASGGYWLACAGDEIWVDESSLVGSIGVIFSSFGFHEF 129 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + + G+ + + K+ PF P+ V+ ++ + + + F+ V R D Sbjct: 130 MARNGIERRVHTAGRSKSLADPFLPEKPEDVERLKALQEPIHRAFIEYVKRHRGTRLDLN 189 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 L + +WTG EA ++GL D V L D+ ++ + + + Sbjct: 190 ADLFNADVWTGQEAVRLGLADGVAHL---VPKLQENYGDK--VRLVPYGQRRPFLQRLGM 244 Query: 265 NLSISSLLEDTIPLMKQT 282 +L+ +L E + Sbjct: 245 SLAGQALAEVENRALWAR 262 >gi|83593953|ref|YP_427705.1| peptidase S49 [Rhodospirillum rubrum ATCC 11170] gi|83576867|gb|ABC23418.1| Peptidase S49 [Rhodospirillum rubrum ATCC 11170] Length = 593 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 62/266 (23%), Positives = 111/266 (41%), Gaps = 17/266 (6%) Query: 39 ARIAIRGQIE--------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 A IA G I D++ L I+ D A+++ + SPGGS + Sbjct: 302 ALIAASGPIVTGDGKVSPFDGKEIDARALAATIDSAVDDAGVAAIVLRIDSPGGSYVGSD 361 Query: 85 AIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 ++RA+ + + PVI + ++AAS GY ++ +N IVA +L GSIGV+ + Sbjct: 362 LVWRAVSRARQHGLPVIASMGDVAASGGYYMAMGANKIVAQPGTLTGSIGVVAGKFTIAK 421 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 + LG++ V++ A S + + M ++D+ Y F + R + + Sbjct: 422 ASEDLGIAWGGVEAGRNAALFSLTDPFDEAGQRRMDQILDAIYADFTGKAAAGRGLSPEA 481 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 + GR+WTG +A GL+D +GG + + + PK L Sbjct: 482 IEEAARGRVWTGEDALAHGLVDALGGLQTAIELARTEAGLDPHAPLAITVYPKREGPEWL 541 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289 +S+ + ++ GL + Sbjct: 542 LRALMSAEQIGGVRSVRAAL--GLVS 565 Score = 96.6 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 98/289 (33%), Gaps = 33/289 (11%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVY-----FSWSSHVEDNSPHVARIAI------------ 43 M F+ K + + ++ ++ ++ S ++ P + + Sbjct: 1 MRFIGKALLVVFAVVGILASVLIVSGAVALSSFIGKDEPLPTKLVLDLDASGSFSEDGGA 60 Query: 44 ---------RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 G+ + + E + + D + L+V + + + +AI + Sbjct: 61 LPGLGFLSGEGERPSLRAVTEGLIAAASDPTVKGLMVRIGEGSLGMAQAQELRQAILAFR 120 Query: 95 NRKPVITEVHEMAASA-----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 E Y ++ A + + ++G+ G + P+V+ LD LG Sbjct: 121 ASGKPSIAYAETIGEFGQGTVPYYLASAVEDVWLQPSGMLGTTGFAVRMPFVRKLLDDLG 180 Query: 150 VSIKSVKSSPMKAE--PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 + + + K + ++P +V VR V+E+R + D+ L Sbjct: 181 ILPQFIARKEFKDAAATATQYGMSPAQEISFGALVQGWSGQVVRAVAEARGLSEDQVRGL 240 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 D AEA + GLID +G +E +++ + + + Sbjct: 241 IDRSPLLAAEALESGLIDRLGYPDEARKAMGERAGTDEHLSVGQYAERQ 289 >gi|126734017|ref|ZP_01749764.1| peptidase, family S49, putative [Roseobacter sp. CCS2] gi|126716883|gb|EBA13747.1| peptidase, family S49, putative [Roseobacter sp. CCS2] Length = 264 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 107/259 (41%), Gaps = 18/259 (6%) Query: 33 DNSPHVARIAIRGQIE------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + P VA I ++G I D+ L IE+ A+ + ++ PGGS I Sbjct: 9 KSEPFVAVIRLQGAIANSGRGLDNPGLAPVIEKAFSKGKPAAVALEINCPGGSPVQSSLI 68 Query: 87 FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I+++ + K PV V ++AAS GY ++CA++ I S+ GSIGV+ Sbjct: 69 ASRIRRLADEKKIPVFAFVEDVAASGGYWLACAADEIFIDSCSITGSIGVISAGFGATEA 128 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 +DK+GV + + K+ PF P V+ ++ ++ + F+ V R Sbjct: 129 IDKIGVERRVHTAGKSKSMMDPFKPEKPADVKKLKGWLEDLHATFIDYVKSRRGTKLSDN 188 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 L G ++ G + GL D +G V + + + + + K Sbjct: 189 PDLFTGEVYIGQKGIDEGLADGIGHLAPVMKERFG-----DKVQFRRYGQKKPLLARF-- 241 Query: 265 NLSISSLLEDTIPLMKQTK 283 + +++D + +++ Sbjct: 242 ---GAQIVDDAVAGIEERA 257 >gi|329897050|ref|ZP_08271822.1| protease IV, a signal peptide peptidase [gamma proteobacterium IMCC3088] gi|328921490|gb|EGG28876.1| protease IV, a signal peptide peptidase [gamma proteobacterium IMCC3088] Length = 604 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 60/265 (22%), Positives = 116/265 (43%), Gaps = 12/265 (4%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATA 68 +++ E + VA + ++G I + ++ + DS A Sbjct: 303 ISMAEYASLTQDAPEQHENAVAVVFVQGGIQEGPQGPGVAGADDIANLLRTAYSKDSTKA 362 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ ++SPGGS A E I + + + PV+ + ++AAS G +S +++ I A T+ Sbjct: 363 IVLRVNSPGGSIIASEMIRDEVSAAQRKGIPVVVSMGDVAASGGVWVSMSADKIYAEPTT 422 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 + GSIGV +P + +D G++ V ++ SP ++ + ++Y Sbjct: 423 ISGSIGVAVAFPTFERVMDWAGINFDGVTTAEN-TGWSPVLPMSDALDALFARWASTAYD 481 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 FV LV+E RN D ++ GR+W G+ A+++GL+D +G E + L + Sbjct: 482 RFVNLVAEGRNKEPDYIRSIAGGRVWIGSMAQELGLVDAMGDLEAAITAAAELAQLED-H 540 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLL 272 + + LK L + Sbjct: 541 SVDYVTKKPSKAMMILKELQGGIGV 565 Score = 73.5 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 39/285 (13%), Positives = 93/285 (32%), Gaps = 34/285 (11%) Query: 2 EFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------- 51 FVL I ++++L++ V V IA +G + D + Sbjct: 18 GFVLNLITFA-IVIALISGVVQSIFDRPEEPTADGKVLMIAPKGLVLDQETFPDELEFPF 76 Query: 52 -----------ELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPV 99 +L+ + R + D S A+ + S G A+ + + +++ Sbjct: 77 NVSDVEQIQTRDLVALLRRAAEDSSLAAVSIDFSETGFAGPTTALAVAKELSALRDTGKP 136 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 I + YL++ ++ + + G+ Y + DKL +++ + Sbjct: 137 IIAYSRALGTGSYLMASQADEVFVHPAGALSVSGLGGYRDYTRDLTDKLRINVHNYSQGD 196 Query: 160 MKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR--IWTG 215 K+ +++ Q +++ + ++ R++ ++D G Sbjct: 197 YKSATEGLTRRDMSDADRQQRTELLQPIWQEMKARMAAGRDVDASVIQDMADNYSVPLLG 256 Query: 216 A-------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 +A+ +GLID E + + S + Sbjct: 257 EAGYHNLAQAEAMGLIDGTMNFPEYREYMMERFGKISKDGRDTYP 301 >gi|51473588|ref|YP_067345.1| protease [Rickettsia typhi str. Wilmington] gi|51459900|gb|AAU03863.1| probable protease [Rickettsia typhi str. Wilmington] Length = 304 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 67/265 (25%), Positives = 117/265 (44%), Gaps = 18/265 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPG 77 ++S D+ VA + + G I + L E IE+ + AL + ++SPG Sbjct: 30 FASVFGDSKEVVAVLRLSGVIGKVSTVQSGLTLESLNELIEKAFKIKKLKALCLIINSPG 89 Query: 78 GSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 GS E I + I+ + KN+ V + + +MAAS GY ++C+ + I A +S++GSIGV+ Sbjct: 90 GSPVQSELIAKRIRDLAKKNKIKVYSFIEDMAASGGYWLACSGDKIYALPSSVIGSIGVI 149 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 ++KLG+ + KA PF +N +++++D+ Y F+ V E Sbjct: 150 SSGFGFHEAINKLGIERRVYTEGKNKAVLDPFKPINKDDLKIIKDLQKQVYEHFIEYVKE 209 Query: 196 SRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 R + + +G W G A GLID +G V + + + + Sbjct: 210 RRAGKLTQQDEILFNGEFWAGQTALDYGLIDGIGDMYSVMKEKFGDNIKF------QYLC 263 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLM 279 K W + L+ED + + Sbjct: 264 AKQPWLKKKLGMGSKVLIEDLVNTV 288 >gi|163852521|ref|YP_001640564.1| peptidase S49 [Methylobacterium extorquens PA1] gi|163664126|gb|ABY31493.1| peptidase S49 [Methylobacterium extorquens PA1] Length = 286 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 69/273 (25%), Positives = 117/273 (42%), Gaps = 19/273 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSA 80 + P VA + + G I + +ER +A+ + ++SPGGS Sbjct: 16 RFRETPPRVAVVRLSGAIGAVSPIRAGLSIGTVAPSLERAFTMPGLSAVALVINSPGGSP 75 Query: 81 YAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 I+R I+ + K + V + AAS GY+I+CA++ IVA SLVGSIGV+ Sbjct: 76 VQSHLIYRRIRALAAEKEIKVFAFVEDAAASGGYMIACAADEIVADPASLVGSIGVVSAG 135 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 ++++G+ + KA PF NP + ++++ F LV E R Sbjct: 136 FGFDRLIERIGIERRVHTQGEAKAMLDPFRPENPLDIARLKEIQADVQALFSGLVRERR- 194 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 D + L G +WTG +A ++GL+D +G ++ Y VD ++ + Sbjct: 195 PTLDASRDLFTGAVWTGRQALELGLVDAIGDLRGTLRARYGEKVD-----LRLVAENRGS 249 Query: 259 WFCDLKNLSISSLLEDTIP--LMKQTKVQGLWA 289 W L + +P L+ + + WA Sbjct: 250 WLARLLRRAGPGQTAAGLPDALIAAVEERAAWA 282 >gi|23306358|gb|AAN17406.1| Unknown protein [Arabidopsis thaliana] gi|28058917|gb|AAO29968.1| Unknown protein [Arabidopsis thaliana] Length = 388 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 67/264 (25%), Positives = 116/264 (43%), Gaps = 16/264 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIED-------------SQELIERIERISRDDSATALIVSL 73 W+ + +A I G I +++LIE+I + A I+ + Sbjct: 76 WTLGLTGGRDQIAIIRAGGSISRVKGPLSTPGSAIIAEQLIEKIRSVRESKKYKAAIIRI 135 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 SPGG A A + ++R I+ + KPVI + ++AAS GY ++ A+N IVA +L GSIG Sbjct: 136 DSPGGDALASDLMWREIKLLAETKPVIASMSDVAASGGYYMAMAANAIVAENLTLTGSIG 195 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-SEVNPKAVQMMQDVVDSSYHWFVRL 192 V+ + +K+G + +++ + P+ ++ + +Y F Sbjct: 196 VVTARFTLAKLYEKIGFNKETISRGKYAELLGAEERPLKPEEAELFEKSAQHAYQLFRDK 255 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI--K 250 + SR++P DK ++ GR+WTG +A GLID VGG +K+ Sbjct: 256 AALSRSMPVDKMEEVAQGRVWTGKDAHSRGLIDAVGGLSRAIAIAKQKANIPLNKKVTLV 315 Query: 251 DWNPPKNYWFCDLKNLSISSLLED 274 + + P L + S + D Sbjct: 316 ELSRPSTSLPDILSGIGSSVIGVD 339 Score = 39.6 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 21/59 (35%) Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 + + ++ + K+ GLI + +EV L + +K+ + K Sbjct: 11 GKKREDVENFINQGVYEIEKLKEAGLIKDIRYDDEVITMLKERLGVEKDKKLPTVDYKK 69 >gi|163761019|ref|ZP_02168097.1| proteinase sohB [Hoeflea phototrophica DFL-43] gi|162281800|gb|EDQ32093.1| proteinase sohB [Hoeflea phototrophica DFL-43] Length = 285 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 62/268 (23%), Positives = 121/268 (45%), Gaps = 20/268 (7%) Query: 38 VARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + + + G I + + R D A A+ + ++SPGGS I+ Sbjct: 19 IPVVRLSGAIMAGGNQFRQNLNLATAAPLLARAFADKQAPAVAIMINSPGGSPVQSRLIY 78 Query: 88 RAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + I+ + + K V+ V ++AAS GY+I+CA + I+A +S+VGSIGV+ + Sbjct: 79 KRIRDLAEEKDKKVLMFVEDVAASGGYMIACAGDEIIADPSSVVGSIGVISAGFGFTGLI 138 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 DK+GV + + K+ PF NP+ + ++++ + F+ LV +SR Sbjct: 139 DKIGVERRVYTAGENKSLLDPFKPENPEDIAYLKELQLDIHKVFIDLVKDSRGARLKDDP 198 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 + GR WTG K++GL+D +G ++ Y K++ P + + + Sbjct: 199 DMFTGRFWTGQRGKELGLVDDLGDLRATLRARYG-----DKVKMRLIAPQRGLFGRKVPG 253 Query: 266 LSISSLLEDTIPLMKQTKVQGL--WAVW 291 ++ + + + + + + A+W Sbjct: 254 VATG-FAANALAGVAEAGLNAIDERALW 280 >gi|85373032|ref|YP_457094.1| periplasmic serine protease [Erythrobacter litoralis HTCC2594] gi|84786115|gb|ABC62297.1| periplasmic serine protease [Erythrobacter litoralis HTCC2594] Length = 626 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 62/261 (23%), Positives = 117/261 (44%), Gaps = 9/261 (3%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDSQ--------ELIERIERISRDDSATALIVSLSS 75 + + + + + + + G+I D + + I + + D LIV + S Sbjct: 300 AWLSDNARDTSGSAIGVVTVAGEIVDGEAGPGTAGGDRIAELLDAALSDDLAGLIVRVDS 359 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVI-TEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 PGGS A EAI A+ + K + I + +AAS GY +S ++ I A ++ GSIG+ Sbjct: 360 PGGSVLASEAIRDAVLRHKAKGIPIAVSMANVAASGGYWVSTPADRIFAEPETITGSIGI 419 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 P + + GV+ V ++ + +P + P+ ++Q ++ Y F+ VS Sbjct: 420 FAVIPTFENLAAEYGVNADGVATTSLSGQPDLIAGFTPEVDAILQSSIEDGYRDFLTRVS 479 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 E+R +P ++ + GR+W G A+++GL+D GG EE + A + + Sbjct: 480 EARKLPMERVDAIGQGRVWDGGTARQIGLVDQYGGLEEALDWVAAQAELEEGDWHVRFLG 539 Query: 255 PKNYWFCDLKNLSISSLLEDT 275 + F +L + + E Sbjct: 540 NEQQPFDNLLRTMLLTDSESA 560 Score = 66.6 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 81/209 (38%), Gaps = 9/209 (4%) Query: 49 DSQELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 D+Q+L+ I+ + DD A+++ GG + I A+Q+ ++ + + Sbjct: 80 DAQDLVHAIDAATGDDRIKAIVLDLTGFLGGGHVHLQDIGEALQRARDAEKPVLTYGIGY 139 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 +++ ++ + G Y FL+ L ++ + K K+ PF Sbjct: 140 GDDAMMLAAHASEVWLDPLGGAIIAGPGGNRLYFGQFLEDLNINARIYKVGTYKSAVEPF 199 Query: 168 S--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAK------ 219 +++P+A + Q + + + + V ++R T+ S ++ Sbjct: 200 DRSDMSPEARENAQALYGALWEEWQAKVKKARPAIDLDTVTGSPAEWVAASQGDLAQAAL 259 Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 GL+D +G + E + + + + + Sbjct: 260 AAGLVDTLGSRVEFGERVAEIAGEDDWEE 288 >gi|240139855|ref|YP_002964332.1| protease SohB, belong to MEROPS peptidase family S49 (protease IV family, clan S-) [Methylobacterium extorquens AM1] gi|240009829|gb|ACS41055.1| protease SohB, belong to MEROPS peptidase family S49 (protease IV family, clan S-) [Methylobacterium extorquens AM1] Length = 286 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 69/273 (25%), Positives = 117/273 (42%), Gaps = 19/273 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSA 80 + P VA + + G I + +ER +A+ + ++SPGGS Sbjct: 16 RFRETPPRVAVVRLSGAIGAVSPIRPGLSIGTVAPSLERAFTMPGLSAVALVINSPGGSP 75 Query: 81 YAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 I+R I+ + K + V + AAS GY+I+CA++ IVA SLVGSIGV+ Sbjct: 76 VQSHLIYRRIRALAAEKEIKVFAFVEDAAASGGYMIACAADEIVADPASLVGSIGVVSAG 135 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 ++++G+ + KA PF NP+ + ++++ F LV E R Sbjct: 136 FGFDRLIERIGIERRVHTQGEAKAMLDPFRPENPQDIARLKEIQADVQALFSGLVRERR- 194 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 D + L G +WTG +A +GL+D +G ++ Y VD ++ + Sbjct: 195 PTLDASRDLFTGAVWTGRQALDLGLVDALGDLRGTLRARYGEKVD-----LRLVAENRGS 249 Query: 259 WFCDLKNLSISSLLEDTIP--LMKQTKVQGLWA 289 W L + +P L+ + + WA Sbjct: 250 WLARLLRRAGPGQTAACLPDALIAAVEERAAWA 282 >gi|268323790|emb|CBH37378.1| putative protease, peptidase S49 family [uncultured archaeon] Length = 251 Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 65/239 (27%), Positives = 111/239 (46%), Gaps = 12/239 (5%) Query: 33 DNSPHVARIAIRGQIEDSQE----------LIERIERISRDDSATALIVSLSSPGGSAYA 82 +A I I+G I + LI+ IE A+I ++SPGG+ +A Sbjct: 7 KEKGSIAIIPIKGMITSEESVFGLMAASTVLIKDIEEAENKRKIKAVIFEINSPGGTPFA 66 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + I I+K+ KP I V E AAS Y I+ A + IVA E S VGSIG + P + Sbjct: 67 SKEIATCIEKM--DKPAIAWVREYAASGAYWIASACDEIVADELSTVGSIGAMSIRPDIG 124 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 + K G+ I+++++ K P+ + + ++++ +D F+ V+++R + Sbjct: 125 ELMKKFGIDIETLRTGSYKGLGLPYEKPTEEERELLKKELDEIQDNFLNAVAKNRKLDDA 184 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 K LS +++ G EAK +GLID +GG+E + + R + + Sbjct: 185 KMKELSSAKVYLGREAKDMGLIDHLGGKELAIRIAKERSGIRKERIVDYGERKRKGLLR 243 >gi|77360352|ref|YP_339927.1| protease IV, a signal peptide peptidase [Pseudoalteromonas haloplanktis TAC125] gi|76875263|emb|CAI86484.1| protease IV, a signal peptide peptidase [Pseudoalteromonas haloplanktis TAC125] Length = 621 Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 73/252 (28%), Positives = 127/252 (50%), Gaps = 14/252 (5%) Query: 36 PHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 VA + RG I D + + DD A+++ + S GGS +A E I Sbjct: 323 EKVAVVVARGTIVDGERKAGEIGGDSTAALLRNARLDDKVKAVVLRIDSGGGSMFASEVI 382 Query: 87 FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + +K KPVI + +AAS GY I+ A+N I AA +++ GSIGV + + L Sbjct: 383 RAEVLALKAAGKPVIASMSSVAASGGYWIASAANEIWAAPSTITGSIGVFGTFMTFENTL 442 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 LGV V ++ M S ++ K Q++Q V+ +Y F+ +V+++RN+ ++ Sbjct: 443 SNLGVYSDGVATTDMAG-FSITRPLDDKMAQVIQMSVEEAYGRFLDVVADARNMTPEQVD 501 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD--QSIRKIKD-WNPPKNYWFCD 262 ++ GR+W A+A+++GLID +G +++ ++ AL ++ IK +P + Sbjct: 502 NIAQGRVWIAAKAQELGLIDKLGDKQDAIKAAAALAKLNHYDVKTIKQSLSPQQKMIQDI 561 Query: 263 LKNLSISSLLED 274 L N S+ S+L Sbjct: 562 LGNASVKSMLGS 573 Score = 84.7 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 45/320 (14%), Positives = 102/320 (31%), Gaps = 37/320 (11%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------- 50 + F + I +L ++ V S + + V R+ + G I + Sbjct: 13 INFSRRLILNILFLLLVIVFIVSLSSDGDKIIVENGSVLRLNLNGPIVEEKTYIDPIEAA 72 Query: 51 ----------------QELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV 93 +++E I ++DD + +++ L P + I +A++ Sbjct: 73 ISDATSNAESPGEILLDDIVEVINEAAKDDRISVILLDLQEMPKAHLNKLKQITKALEAF 132 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K + A Y I+ ++ + V G Y K L+KL V+ Sbjct: 133 KQTGKKVIASGYYYTQAQYYIAAHADEVAMHPYGSVAIEGFGMYPLYFKEALEKLKVTQH 192 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-- 209 + K+ PF ++++ A + + + + ++ + + V+ R D Sbjct: 193 IFRVGTFKSAVEPFIRNDMSDAAKEANRVWLTALWNEYKQDVAAVRPFDESNFDETMDVF 252 Query: 210 ------GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 G A +D + ++V Q L L K + Y Sbjct: 253 LAKMTAANGDAGQYALDNQWVDTLKTNQQVRQQLIDLVGADEKGKTFKQVSFRQYLSLVK 312 Query: 264 KNLSISSLLEDTIPLMKQTK 283 + + + + + ++ Sbjct: 313 PPVVFDNPMTEKVAVVVARG 332 >gi|315230248|ref|YP_004070684.1| protease IV [Thermococcus barophilus MP] gi|315183276|gb|ADT83461.1| protease IV [Thermococcus barophilus MP] Length = 338 Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 53/233 (22%), Positives = 121/233 (51%), Gaps = 3/233 (1%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + +A + I G I+++ +++ +I +I ++S +++ + SPGG Sbjct: 86 EKQPAKANTTIAILPIMGPIDENMALDVVSKIRQIKENESIGGVLLWIESPGGYVGPVRV 145 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I++ ++K+ KPV+ A S GY I+CA++ I+A + VGSIGVL+ + ++ + Sbjct: 146 IYKELKKLSYSKPVVAYTGGYADSGGYFIACAADKIIADPLAEVGSIGVLYVHYDLEQYY 205 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 + G+ + K+ K + + ++ P+ +M+++++D+ + F+++VSE R++ + T Sbjct: 206 AQNGIKVNVFKTGKYKDMGAEWRDLTPEEREMIKNIIDTYFQDFLQVVSEGRHLDMNTTK 265 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + G+ W + K + L+D G + + L L +S + + ++ Sbjct: 266 KYATGQTWFATDVKGI-LVDDTGDLDYAIKVLEQLMNVKSAKVVLYSAQKTDF 317 >gi|237739508|ref|ZP_04569989.1| protease IV [Fusobacterium sp. 2_1_31] gi|229423116|gb|EEO38163.1| protease IV [Fusobacterium sp. 2_1_31] Length = 588 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 64/267 (23%), Positives = 114/267 (42%), Gaps = 23/267 (8%) Query: 32 EDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLSSPGG 78 +D+ V I + G I +SQ E I ++ + A+++ ++SPGG Sbjct: 309 DDSDNIVYVIPLEGDIVESQTEIFSGEANINVNETIAKLNTAKENKKIKAVVLRVNSPGG 368 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 SA + I ++++ + KPV + +AAS GY IS +N I ++ GS+GV+ Sbjct: 369 SALTSDIIAEKVKELASEKPVYVSMSSVAASGGYYISANANKIYVDRNTVTGSVGVVSVL 428 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 L GV+++ + S + K + + Y F+ +VS+ R Sbjct: 429 VDYSSLLKDNGVNVEKISEGEYSDLYSVDT-FTEKKYNKIYNSNLKVYEDFLNVVSKGRK 487 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK-------- 250 I +K L++GR+WTG EA K GL D +GG ++ + Sbjct: 488 IDKEKLKELAEGRVWTGTEAVKNGLADEIGGLYSTIYAITDDNNIDDYTVVLAKDKVEIG 547 Query: 251 -DWNPPKNYWFCDLKNLSISSLLEDTI 276 + Y D K+L +++ +D + Sbjct: 548 NIYKKYSRYIKMDKKDLIKTTVFKDYL 574 Score = 66.6 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 101/281 (35%), Gaps = 32/281 (11%) Query: 3 FVLKKIKTRYVM-------LSLVTLTVVYFSWSSHVEDNSPHVARI----------AIRG 45 F++K+I + ++ + ++ + + + ++ Sbjct: 23 FIIKEIFSFFIKLFLFLLIVGVIISLIFKSIEEKPKVVIKDNAYVVIDLANSYKERSLSS 82 Query: 46 QIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPV 99 + + + + I+ +S DD + +++ L+S S E + + + ++ K V Sbjct: 83 NLFEDDSINFYNLLTNIKNLSFDDKVSGVVLKLNSNSLSYAQSEELAQELSMLRGADKKV 142 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSS 158 I + YL S A I + + S +I F+ + L DK GV + Sbjct: 143 IAYFENVNRKNYYLASYADEIYMPSANSTSVNIYPYFREEFYTKKLSDKFGVKFNIIHVG 202 Query: 159 PMKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216 K+ ++ +A + +++ +Y F+ +VS +R + D+ + A Sbjct: 203 DYKSYQENLAKDTMSKEAREDSTRILNLNYENFLDIVSLNRKLNRDELDKIIKDGDLVAA 262 Query: 217 ---EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + LID + + L G + I+D+ Sbjct: 263 SSIDLFSNKLIDKYSYWDNLVTLL---GGKDKLISIQDYAK 300 >gi|331085365|ref|ZP_08334451.1| hypothetical protein HMPREF0987_00754 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408148|gb|EGG87638.1| hypothetical protein HMPREF0987_00754 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 329 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 68/284 (23%), Positives = 122/284 (42%), Gaps = 21/284 (7%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQI---EDSQEL------------IERIERISRDDSAT 67 ++ P++ +A+ G I S + ++ I+R+ D+ Sbjct: 44 ALLGGNTTTLPGEPYIGIVAVEGTIQEQTSSDSIFDTVAGYQHDITLDYIDRMMEDEKNQ 103 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAE 125 +++ + SPGG+ Y E ++R + K +PV T + AAS GY IS S+ I A Sbjct: 104 GILLRVDSPGGTVYESEELYRKLVAYKEETGRPVWTYMEHYAASGGYYISAPSDKIYANP 163 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 + GSIGV+ + +KLG+ S+ S K S++ + + + Q VD S Sbjct: 164 NTTTGSIGVIMSGYDMSGLYEKLGIRSVSITSGKNKD----MSKLTEEQIAIYQSSVDES 219 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 + FV +V++ R + + ++DGR +T +AK GLID + EE+ +++ + Sbjct: 220 FDRFVEIVADGRKMTEETVREIADGRTYTAKQAKANGLIDEISLYEEMQEAMEQETGCTT 279 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + P F L+ L S E + L Sbjct: 280 FYEPEQGVSPLASLFSKLETLKPKSEAEVLTEWNEDLGSGVLMY 323 >gi|281424222|ref|ZP_06255135.1| signal peptide peptidase SppA [Prevotella oris F0302] gi|281401491|gb|EFB32322.1| signal peptide peptidase SppA [Prevotella oris F0302] Length = 588 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 66/266 (24%), Positives = 123/266 (46%), Gaps = 17/266 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED---------------SQELIERIERISRDDSATALI 70 + H+A G I D ++ + +E +++DD A++ Sbjct: 288 INADDTPVTGEHIAVYYAYGDIVDKASPQSIFQDDRQIVGNDMCKDLEDLAKDDDVKAVV 347 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + ++S GGSAYA E I+ I ++K KPV+ + AAS GY +S +N IVA T++ G Sbjct: 348 IRVNSGGGSAYASEQIWHQISELKKIKPVVVSMSGAAASGGYYLSSNANWIVADPTTITG 407 Query: 131 SIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 SIG+ + KLG++ VK++ + P+ + ++Q+ V+ Y F Sbjct: 408 SIGIFGLFLDRSELYTKKLGINYAEVKTNRNSVFGASGHPFTPEQLSLLQNNVNRGYMLF 467 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 + V+E R + ++ ++ GR+W G +A K+ L+D +GG ++ + A + + Sbjct: 468 KKRVAEGRKMTMEQVENIAQGRVWLGQDAIKLKLVDQLGGLDD-AIAKAAKLAKMNDYET 526 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDT 275 + P + W L + L + Sbjct: 527 ASYPSPLSTWEQLLGSYVGGDDLLNG 552 Score = 98.5 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 99/284 (34%), Gaps = 31/284 (10%) Query: 1 MEFVLKKIKTRYVMLSLVTLTV----------VYFSWSSHVEDNSPHVARIAIRGQIEDS 50 M+ K + + L L + + + S SS + V + + G + + Sbjct: 1 MKDFFKNVFATMLGLFLFGIVMSFMGFMCLIGIIASSSSTTKIEDNSVLVLKLDGSMTEQ 60 Query: 51 QE-----------------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 +E ++ I++ DD + + G E I +A+ Sbjct: 61 EEENMMNSLQGISSLSFEGTMKAIKKAKNDDKVAGIYLEAGQFGADLAQAEEIEKALLDF 120 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + I E ++ GY ++ +N I + ++ G+ + Y K L K+G+ Sbjct: 121 RKSGKWIIAYGENYSTLGYYLASTANKIYLNKDGMIEWSGIGGEKVYYKNLLAKVGIKFV 180 Query: 154 SVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K K+ E ++ + Q +D ++ + V+++R++ D +D Sbjct: 181 TTKVGKYKSAVEQLTADNISDADREQTQRYLDGWWNTILATVAKNRSLNKDSLNAYADRV 240 Query: 212 I--WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 I T +K L+D + +++ + I Sbjct: 241 ITLETPENMQKYKLVDGLIYNDQIADIVRKQLGIDKEDDINKLT 284 >gi|84499786|ref|ZP_00998074.1| peptidase, family S49 [Oceanicola batsensis HTCC2597] gi|84392930|gb|EAQ05141.1| peptidase, family S49 [Oceanicola batsensis HTCC2597] Length = 285 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 64/251 (25%), Positives = 106/251 (42%), Gaps = 14/251 (5%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVS 72 L + V P VA I ++G I + + IER R A+ ++ Sbjct: 16 LYIGGMQILDRVMKRPPLVAVIRLQGMISSGPRGPLSDEAMAPVIERAFRRGKPAAVALA 75 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 ++SPGGS I I+++ K PV V + AAS GY ++CA+ I A +S+VG Sbjct: 76 INSPGGSPVQSSLIAARIRRLSEEKSVPVYAFVEDAAASGGYWLACAAEEIHADRSSVVG 135 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ L + GV + S K+ PF + V ++ ++ + F+ Sbjct: 136 SIGVIAASFGAHVLLARQGVERRVHTSGKSKSMLDPFQPEKEEDVARLKSLLTDIHAAFI 195 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 V R ++ L G W +AK++GLID VG V + + + + Sbjct: 196 DHVKTHRGGKLKESEDLFTGEFWLAEKAKELGLIDHVGHLVPVMKEKFG-----DKVRFR 250 Query: 251 DWNPPKNYWFC 261 + P + + Sbjct: 251 KYGPRRGWLSR 261 >gi|302842395|ref|XP_002952741.1| signal peptide peptidase [Volvox carteri f. nagariensis] gi|300262085|gb|EFJ46294.1| signal peptide peptidase [Volvox carteri f. nagariensis] Length = 799 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 8/226 (3%) Query: 32 EDNSPHVARIAIRGQIED--------SQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 +A + G I +I ++ +++D S A+++ + SPGG A + Sbjct: 441 AGGKKRIAVLRTAGAIVGKSSGAAITPDGVIPKLRALAKDKSVAAVVLRIDSPGGDALSA 500 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + ++R I+++ KPVI + ++AAS GY ++ A+ IVA ++ GSIGV+ + Sbjct: 501 DLMWREIRQLDAVKPVIASMADVAASGGYYMAMAARAIVAEPLTITGSIGVVTGKFNLSE 560 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 K+G + + S N + ++ +Y F + SR + + Sbjct: 561 LYCKIGYNKVLLSWGRYALLLSDIKGFNEEEEKLFDASAQHAYESFRNKAALSRGMEPEV 620 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 ++ GR+W+G AK+V L+D VGG + ++ Sbjct: 621 MEEVAQGRVWSGLAAKEVELVDAVGGIHKAISLARHAAGIPEGERV 666 Score = 79.7 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 78/218 (35%), Gaps = 13/218 (5%) Query: 34 NSPHVARIAIRGQIEDSQ-----------ELIERIERISRDDSATALIVSLSSPGGSAYA 82 V + G+I D + + + + D + + + G Sbjct: 177 KKDSVLTFTLEGEISDQSRGFFDSGLSLPAVCSCLRKAALDPRVQGVAIEIGPLGIGWAK 236 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + I R I + + + A Y ++ A + I A T+ + G + +++ Sbjct: 237 VQEIKRHIDYFRASGKYVVAWMKQGAEKEYYLATACSEIYAPPTAYLSLRGFVTGGTFLR 296 Query: 143 PFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 LDK+GV + + K+ + +++P+ + + D+ D F+ VS +R Sbjct: 297 GVLDKVGVEPQVRRIGSYKSAGDQLLRQDMSPEQQEQLTDLQDDVIDEFLLQVSTARGKT 356 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 + ++ + K G I + ++E+ L Sbjct: 357 TKEVKEFIHEGVYDMQKFKSGGWITDLWYEDELLTELK 394 >gi|240850068|ref|YP_002971461.1| protease SohB [Bartonella grahamii as4aup] gi|240267191|gb|ACS50779.1| protease SohB [Bartonella grahamii as4aup] Length = 282 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 60/283 (21%), Positives = 118/283 (41%), Gaps = 19/283 (6%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIER----------IERISRDDSATALIV 71 + + + + ++G I DS I R +E+ + A+ + Sbjct: 3 FIKSFIPRRFSSDKLEIPVVRLQGAIMDSSASISRTLSLSRCANLLEKAFAHKKSPAVAL 62 Query: 72 SLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 ++SPGGS IF+ I+ + + K V+ + ++AAS GY+I+CA + I A +S+V Sbjct: 63 IINSPGGSPVQSRFIFKRIRDLAEEKNKKVLVFIEDIAASGGYMIACAGDEIFADPSSIV 122 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ L K+G+ + + K PF ++ ++ + + F Sbjct: 123 GSIGVVSASFGFPELLKKIGIERRVYTAGKNKVTLDPFQPEKKADIEHLKSLQLEVHQTF 182 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 + LV E R L G W+G ++ ++GL+D + V + + + K+ Sbjct: 183 IDLVKERRAEKLSDDSNLFTGMFWSGKQSVELGLVDGLNDVRSVIKERFG-----NDAKL 237 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + PPK++ + + + + + A+W Sbjct: 238 RLIMPPKSFLGPKTPSGVTAHTVYTVVDSALMAAEE--RALWQ 278 >gi|88608447|ref|YP_506296.1| signal peptide peptidase SppA, 36K type [Neorickettsia sennetsu str. Miyayama] gi|88600616|gb|ABD46084.1| signal peptide peptidase SppA, 36K type [Neorickettsia sennetsu str. Miyayama] Length = 308 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 68/255 (26%), Positives = 124/255 (48%), Gaps = 7/255 (2%) Query: 2 EFVLKKIKTRYVMLSLVTLTVVYFSWSSH------VEDNSPHVARIAIRGQIEDSQELIE 55 F L+K T + +++ + ++ S ++P++ R+ G I+ Sbjct: 11 NFSLRKRLTFWKVVTFALIALLLIVSGSSFRGGFFDSFSTPYIGRVVFSGVIDQDLARNS 70 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 + + + A+I+ + S GG A A EA++ ++ V KPV+ + + AS Y+++ Sbjct: 71 QFASFADNPKIKAIILHVDSGGGGAAASEALYNVVRSVSQVKPVVIVANGIMASGAYMVA 130 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 A+ IVA TS+VGSIG++ Q P K+GV + V+S +KA PS E +A Sbjct: 131 MAAEHIVAYNTSIVGSIGMILQAPNFYEIGKKVGVKMDVVRSGRLKAFPSILEEFTKEAR 190 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 M+ + + F+ +V E R I + ++ G+I+TG EA + L+D +G + Sbjct: 191 LAMEHSISVANEHFLSMVQERRKITDARVMSEIATGKIFTGREALEFSLVDEIGDEGNAV 250 Query: 235 QSLYALGVDQSIRKI 249 + L G+ IR + Sbjct: 251 RWLKERGITGKIRDL 265 >gi|218531356|ref|YP_002422172.1| peptidase S49 [Methylobacterium chloromethanicum CM4] gi|218523659|gb|ACK84244.1| peptidase S49 [Methylobacterium chloromethanicum CM4] Length = 286 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 69/273 (25%), Positives = 117/273 (42%), Gaps = 19/273 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSA 80 + P VA + + G I + +ER +A+ + ++SPGGS Sbjct: 16 RFRETPPRVAVVRLSGAIGAVSPIRAGLSIGTVAPSLERAFTMPGLSAVALVINSPGGSP 75 Query: 81 YAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 I+R I+ + K + V + AAS GY+I+CA++ IVA SLVGSIGV+ Sbjct: 76 VQSHLIYRRIRALAAEKEIRVFAFVEDAAASGGYMIACAADEIVADPASLVGSIGVVSAG 135 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 ++++G+ + KA PF NP+ + ++++ F LV E R Sbjct: 136 FGFDRLIERIGIERRVHTQGEAKAMLDPFRPENPQDIARLKEIQADVQALFSGLVRERR- 194 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 D + L G +WTG +A +GL+D +G ++ Y VD ++ + Sbjct: 195 PTLDASRDLFTGAVWTGRQALDLGLVDALGDLRGTLRARYGEKVD-----LRLVAENRGS 249 Query: 259 WFCDLKNLSISSLLEDTIP--LMKQTKVQGLWA 289 W L + +P L+ + + WA Sbjct: 250 WLARLLRRAGPGQTTTGLPDALIAAVEERAAWA 282 >gi|118467630|ref|YP_885858.1| signal peptide peptidase SppA, 67K type [Mycobacterium smegmatis str. MC2 155] gi|118168917|gb|ABK69813.1| signal peptide peptidase SppA, 67K type [Mycobacterium smegmatis str. MC2 155] Length = 594 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 70/297 (23%), Positives = 125/297 (42%), Gaps = 32/297 (10%) Query: 27 WSSHVEDNSPHVARIAIRGQIE----------------DSQELIERIERISRDDSATALI 70 S + P +A + + G I + + + +D A++ Sbjct: 292 PSLPGRKSKPTIAVVTLHGAIVSGRGGPQPLPFGRSSAGGDTIAAALREAAANDDVAAVV 351 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + + SPGGS E ++R + + + KPV+ + +AAS GY +S A++ IVA ++ Sbjct: 352 LRVDSPGGSVTGSETVWREVVRTRDAGKPVVASMGAVAASGGYYVSMAADEIVANAGTIT 411 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGVL + DKLGV +V+++ S + + ++ D Y F Sbjct: 412 GSIGVLTGKFVSRELKDKLGVGSDAVRTNANADAWSTNAPFTDEQHARVEAEADLLYRDF 471 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V +E R +P ++ L+ GR+WTG++AK+ GL+D VGG L Sbjct: 472 VERAAEGRKLPIEEMESLARGRVWTGSDAKERGLVDHVGGLRAAVTRAKVLAGFDEDADA 531 Query: 250 KDWNPPKNYWFCDLK----NLSISSLLEDTIPLMKQTKVQGLW-----------AVW 291 + P + W L+ + ++ L + + + V G+ A+W Sbjct: 532 RVVAYPGSSWLDMLRPKPSSQPAAASLPEALAALLGKSVIGVLDQAERSMTGASALW 588 Score = 99.3 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 78/210 (37%), Gaps = 2/210 (0%) Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 + I R + DD LI + P + + + AI RKP + + Y Sbjct: 68 VAAIHRAAEDDRVAGLIARVQLPAAAPGPVQELRDAIVAFGERKPTVAWAETYPGTMSYY 127 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VN 171 ++ A I VG IG +++ LDK G+ + + K+ + F+E Sbjct: 128 LASAFREIWMQPAGSVGLIGFATNATFLRDALDKAGIEAQFIARGEYKSAANVFTEGSYT 187 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + +++S + +++SR + D L+D A GL+D +G ++ Sbjct: 188 EPHREADARLIESLQEQVWQGIAQSRGLDPDTINTLADQAPLLREAAVTAGLVDRIGFRD 247 Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 E ++ + L + P + Sbjct: 248 EAYKRIGELAGGPENTDADHDDAPPRLFLS 277 >gi|119477001|ref|ZP_01617282.1| protease IV [marine gamma proteobacterium HTCC2143] gi|119449808|gb|EAW31045.1| protease IV [marine gamma proteobacterium HTCC2143] Length = 621 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 67/266 (25%), Positives = 123/266 (46%), Gaps = 13/266 (4%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVS 72 + + +A I G I D L + I ++ RD+S AL++ Sbjct: 311 LWIRNIELPSSVADGKIAVIVASGMILDGDWPPGYIGGDSLAQLIRQVRRDESVDALVLR 370 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 + S GGSA+A E I R + +K + + + AAS GY IS ++ I A T+L GS Sbjct: 371 VDSGGGSAFASEVIRRELALLKQQGRPLVVSMGSTAASGGYWISALADEIWATPTTLTGS 430 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IG+ +P ++ L KLG+S V ++ M +N + MQ +++ Y F+ Sbjct: 431 IGIFSAFPTIEKTLGKLGISNDGVGTTAMADAGRIDRPLNSVFGRAMQSSLENGYARFLT 490 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIK 250 +V+ R++ D+ ++ GR+W+GA+A GL+D +GG ++ + + ++ Sbjct: 491 IVASGRDMTTDQVDDVAQGRVWSGADAFDKGLVDQLGGLDQAVAAAAKMANLDQFETEVV 550 Query: 251 D--WNPPKNYWFCDLKNLSISSLLED 274 P + + + + + S L + Sbjct: 551 QLPLTPQQQFIQELMGSEVMLSWLGN 576 Score = 72.3 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 92/251 (36%), Gaps = 14/251 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 Q++I+ + S D T L++ L G + + +++ + I + + + Sbjct: 92 QDVIDAVRYASEDQRITTLVLKLDDLAFGGISKIQEVSLVLEEFRRSGKKIIAIGDNYSQ 151 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 YL++ ++ I V G Y K L+K+ ++ + K+ P Sbjct: 152 DQYLLASHADEIYLHPMGGVSIKGYGVYRSYYKKALEKMAINFHVFRVGNYKSAMEPMMR 211 Query: 170 --VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV--------LSDGRIWTGAEAK 219 ++ + + + S + +V ++ RN+ D L++ + + A Sbjct: 212 ESMSDDSRESNLAWLSSLWGEYVDTIAARRNVSADSVNHYANKFDQVLAEHQGDSARAAA 271 Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 G +D + ++E+ Q L + + Y + L SS+ + I ++ Sbjct: 272 ATGFVDAIVDRDEINQQLINEIGATDEKGFYQRIGFERYLWIRNIELP-SSVADGKIAVI 330 Query: 280 KQTK--VQGLW 288 + + G W Sbjct: 331 VASGMILDGDW 341 >gi|294508389|ref|YP_003572447.1| Protease IV [Salinibacter ruber M8] gi|294344717|emb|CBH25495.1| Protease IV [Salinibacter ruber M8] Length = 746 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 111/205 (54%), Gaps = 8/205 (3%) Query: 34 NSPHVARIAIRG--QIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + G I SQ L E +E D A+++ ++SPGGSA A EA+ Sbjct: 457 AQGRIVVGDPNGQSPIGGSQALGSTPLTEALETARTDSRTEAVVLRVNSPGGSAAASEAM 516 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 +RA+++ N KPVI + ++AAS GY ++ ++ I+A T+ GSIGV + + Sbjct: 517 WRAVKRTANEKPVIVSMGDVAASGGYYLAAGADSIMADPTTTTGSIGVFGILFNAEGLFE 576 Query: 147 K-LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 + LGV+ V++ P S ++P +++ +D +Y+ F+R V+++RN+ + Sbjct: 577 EKLGVTFDGVRTGPYADLYSTTKPLSPDERRLVGGSIDQTYNTFLRRVADARNMDVEAVD 636 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQ 230 ++ GR+W+G +AK+VGL+D G Sbjct: 637 EVAQGRVWSGRDAKEVGLVDTTGTL 661 Score = 81.6 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 96/274 (35%), Gaps = 36/274 (13%) Query: 3 FVLKKIKTR-------YVMLSLVTLT------VVYFSWSSHVEDNSPHVARIAIRGQI-- 47 F ++ + T V L L+ V S S V + + G I Sbjct: 144 FFMRFLSTLAASVIGTLVALGLIVFFFVFFFFAVSLSADQTPTVQSGSVLTVPLAGDIPE 203 Query: 48 ----------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 D + L + + S D A+ + E + +A+ Sbjct: 204 RVTNDPFQKAFGGGPSVDLRGLQTALRKASSDSRIEAVWLRTKGVSADWATLEEVRQAVV 263 Query: 92 KVKNRKPVI--TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 + + + + Y ++ A++ + A S G + L +L Sbjct: 264 QARESGLPVLASSDEFGMTEKDYFLASAADSVFTAPQSAFEYNGFGTTVTFFDGALQRLE 323 Query: 150 VSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 V + +++ K+ PF S+++ + + +++++ F+ VSE+R + D L Sbjct: 324 VEPQLIRAGKYKSAGEPFVRSDLSAPNREQLTALLETTNEQFMTAVSEARGLSTDALNRL 383 Query: 208 -SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 + + + A A + LID + ++EV L L Sbjct: 384 AEEDALLSSAAALEENLIDGLRYEDEVRDRLRGL 417 >gi|83815032|ref|YP_446454.1| signal peptide peptidase SppA, 67K type [Salinibacter ruber DSM 13855] gi|83756426|gb|ABC44539.1| signal peptide peptidase SppA, 67K type [Salinibacter ruber DSM 13855] Length = 746 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 111/205 (54%), Gaps = 8/205 (3%) Query: 34 NSPHVARIAIRG--QIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + G I SQ L E +E D A+++ ++SPGGSA A EA+ Sbjct: 457 AQGRIVVGDPNGQSPIGGSQALGSTPLTEALETARTDSRTEAVVLRVNSPGGSAAASEAM 516 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 +RA+++ N KPVI + ++AAS GY ++ ++ I+A T+ GSIGV + + Sbjct: 517 WRAVKRTANEKPVIVSMGDVAASGGYYLAAGADSIMADPTTTTGSIGVFGILFNAEGLFE 576 Query: 147 K-LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 + LGV+ V++ P S ++P +++ +D +Y+ F+R V+++RN+ + Sbjct: 577 EKLGVTFDGVRTGPYADLYSTTKPLSPDERRLVGGSIDQTYNTFLRRVADARNMDVEAVD 636 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQ 230 ++ GR+W+G +AK+VGL+D G Sbjct: 637 EVAQGRVWSGRDAKEVGLVDTTGTL 661 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 96/274 (35%), Gaps = 36/274 (13%) Query: 3 FVLKKIKTR-------YVMLSLVTLT------VVYFSWSSHVEDNSPHVARIAIRGQI-- 47 F ++ + T V L L+ V S S V + + G I Sbjct: 144 FFMRFLSTLAASVIGTLVALGLIVFFFVFFFFAVSLSADQTPTVQSGSVLTVPLSGDIPE 203 Query: 48 ----------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 D + L + + S D A+ + E + +A+ Sbjct: 204 RVTNDPFQKAFGGGPSVDLRGLQTALRKASSDSRIEAVWLRTKGVSADWATLEEVRQAVV 263 Query: 92 KVKNRKPVI--TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 + + + + Y ++ A++ + A S G + L +L Sbjct: 264 QARESGLPVLASSDEFGMTEKDYFLASAADSVFTAPQSAFEYNGFGTTVTFFDGALQRLE 323 Query: 150 VSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 V + +++ K+ PF S+++ + + +++++ F+ VSE+R + D L Sbjct: 324 VEPQLIRAGKYKSAGEPFVRSDLSEPNREQLTALLETTNEQFMTAVSEARGLSTDALNRL 383 Query: 208 -SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 + + + A A + LID + ++EV L L Sbjct: 384 AEENALLSSAAALEENLIDGLRYEDEVRDRLRGL 417 >gi|188582538|ref|YP_001925983.1| peptidase S49 [Methylobacterium populi BJ001] gi|179346036|gb|ACB81448.1| peptidase S49 [Methylobacterium populi BJ001] Length = 286 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 69/266 (25%), Positives = 116/266 (43%), Gaps = 19/266 (7%) Query: 37 HVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 VA + + G I + +ER +A+ + ++SPGGS I+ Sbjct: 23 RVAVVRLSGAIGAVSPIRPGLSIATVAPSLERAFSMPGLSAVALVVNSPGGSPVQSHLIY 82 Query: 88 RAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 R I+ + K V V + AAS GY+I+CA++ IVA SLVGSIGV+ + Sbjct: 83 RRIRALAAEKEVRVFAFVEDAAASGGYMIACAADEIVADPASLVGSIGVVSAGFGFDRLI 142 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 +++G+ + KA PF NP+ + ++++ F LV E R D + Sbjct: 143 ERIGIERRVHTQGEAKAMLDPFRPENPEDIVRLKEIQADVQALFTGLVRERR-PGLDASR 201 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L G +WTG +A ++GL+D +G ++ Y VD ++ + W L Sbjct: 202 DLFTGAVWTGRQALELGLVDALGDLRTTLRARYGEKVD-----LRLVAENRGSWLARLLR 256 Query: 266 LSISSLLEDTIP--LMKQTKVQGLWA 289 + +P L+ + + WA Sbjct: 257 RAGPGQTAAGLPDALIAAVEERAAWA 282 >gi|154150450|ref|YP_001404068.1| signal peptide peptidase SppA, 36K type [Candidatus Methanoregula boonei 6A8] gi|153999002|gb|ABS55425.1| signal peptide peptidase SppA, 36K type [Methanoregula boonei 6A8] Length = 282 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 111/245 (45%), Gaps = 14/245 (5%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNS-PHVARIAIRGQIEDSQELIE----------R 56 +K +++ + L +V F + D V I + G ++ + + + Sbjct: 21 LKWLLIIIGGLFLVIVIFGAVYLLSDTQHAGVKVIRMEGTLDTGDFIADDSVGSEYVGNQ 80 Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116 + + D A+++ + SPGGS A E I ++ K +KPV+ + MA SA Y +S Sbjct: 81 LRDAADDPMVDAIVLRVDSPGGSPAAAEEIIGDLEYAKTKKPVVVSMGSMATSAAYYVSA 140 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 +N I A +L G++GV++ + + ++ + G ++ VKS K + + P Sbjct: 141 HANEIYADPDTLTGAVGVIWTFSDISDWMKQEGYNVTVVKSGDFKDMGADSHALTPAEQA 200 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Q +V+ S+ F+ V+ R I DGR+ GA+A K+ L+D +G + + Sbjct: 201 YAQQIVNESFQEFINDVTTQRMIAKSDIE---DGRVIRGADAIKINLVDKLGNLNDAIEG 257 Query: 237 LYALG 241 L Sbjct: 258 AQDLA 262 >gi|114563316|ref|YP_750829.1| signal peptide peptidase SppA, 67K type [Shewanella frigidimarina NCIMB 400] gi|114334609|gb|ABI71991.1| signal peptide peptidase SppA, 67K type [Shewanella frigidimarina NCIMB 400] Length = 614 Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 64/209 (30%), Positives = 109/209 (52%), Gaps = 11/209 (5%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 VA I +G I + + + DD A+++ + SPGGSA+A Sbjct: 323 VEQDAVAVIVAKGTILNGKQPAGQIGGESTSALLMKARFDDKVKAVVLRVDSPGGSAFAS 382 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + + +K KPV+ + +AAS GY IS +++ IVA T+L GSIG+ + + Sbjct: 383 EQIRQEVLALKAAGKPVVVSMGSLAASGGYWISASADYIVATPTTLTGSIGIFGMFATFE 442 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+ GV+ V +S SP E+NP+ ++Q ++ YH F+ LV++ R++ + Sbjct: 443 QALNHFGVTSDGVATSDWAGL-SPARELNPQVAAVVQRHIERGYHEFISLVAKERHMTLE 501 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + ++ GR+WTG A +GL+D +G + Sbjct: 502 QVDNIAQGRVWTGKRALTLGLVDELGDMD 530 Score = 82.0 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 37/281 (13%), Positives = 86/281 (30%), Gaps = 36/281 (12%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR- 62 + K I L +TVV + + + + G I D + ++ IE Sbjct: 22 IRKFIINVIFFGLLAVITVVLLNSEDEIVVEDQSALVLNLSGSIVDQKHYVDPIEMAFSQ 81 Query: 63 ------------------------DDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRK 97 D T++++ AI A+ + K Sbjct: 82 GQANDPEGEILLADVLYTINNATQDARITSIVLDLADLRDAGISKMTAIGEALTQFKAAN 141 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + Y ++ ++ I +V G+ Y K L+KL ++ + Sbjct: 142 KSVIAMANGYDQNQYFLASFADKIYLNNQGMVALDGLSRYRLYYKAALEKLKITTHVFRV 201 Query: 158 SPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK--------TLVL 207 K+ PF +++ +++++ + + +V+ +R I D+ L Sbjct: 202 GTFKSAVEPFIRDDMSDADKVASKELLNDIWQSYSTIVASNRQIAPDQLVLSTDEYLAQL 261 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + A + +D + + ++ K Sbjct: 262 DKAEGDSAQMAVNMKWVDELVSADAFRVAMIERVGSDKEGK 302 >gi|225619707|ref|YP_002720964.1| periplasmic serine protease SppA [Brachyspira hyodysenteriae WA1] gi|225214526|gb|ACN83260.1| SppA, Periplasmic serine proteases (ClpP class) [Brachyspira hyodysenteriae WA1] Length = 268 Score = 112 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 3/226 (1%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAA 108 ++LI E + A+++ + SPGGS + E + ++ +K + KP++ MAA Sbjct: 10 EKLISDFEYYFKHPKVKAIVLQVDSPGGSLTSCEEALKYLKDLKKKYPKPIVASFRSMAA 69 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 S GY IS ++ I A E++L GSIGV+ Q+ V +DK G+ + ++KS K SPF Sbjct: 70 SGGYYISMIADKIYANESTLTGSIGVISQFFNVSELMDKYGIKMYTIKSGRNKDSLSPFR 129 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVV 227 E + QD+ D F +V +SR + DGR+++G +A +VGLID + Sbjct: 130 EPREDELAYWQDMTDEFVGQFTNVVEQSRGDKIKGNREDIFDGRVFSGKKALEVGLIDSI 189 Query: 228 GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273 G + + +G + P + +L +IS ++ Sbjct: 190 GTLNDAVKDAAEMGGIEDEEPYIIKKPKEKNDVFNLLFANISESIK 235 >gi|254707871|ref|ZP_05169699.1| Clp protease [Brucella pinnipedialis M163/99/10] gi|256159103|ref|ZP_05456924.1| Clp protease [Brucella ceti M490/95/1] gi|260168171|ref|ZP_05754982.1| Clp protease [Brucella sp. F5/99] Length = 306 Score = 112 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64 L ++ + + + G I +E+ D Sbjct: 13 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 72 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122 A A+ +S++SPGG+ I+R I+ + +++K V V ++AAS GY+I+ A + I+ Sbjct: 73 HAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 132 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +S+VGSIGV+ L K+GV + + K PF + ++ ++ + Sbjct: 133 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 192 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + F+ +V E R L G WTG A +GLID +G + Y Sbjct: 193 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 249 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291 K+K P + L + + S + + GL A+W Sbjct: 250 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 301 >gi|254703750|ref|ZP_05165578.1| Clp protease:peptidase U7:Na+/H+ antiporter NhaA [Brucella suis bv. 3 str. 686] gi|256031039|ref|ZP_05444653.1| Clp protease:peptidase U7:Na+/H+ antiporter NhaA [Brucella pinnipedialis M292/94/1] gi|256060533|ref|ZP_05450701.1| Clp protease:peptidase U7:Na+/H+ antiporter NhaA [Brucella neotomae 5K33] gi|256254442|ref|ZP_05459978.1| Clp protease:peptidase U7:Na+/H+ antiporter NhaA [Brucella ceti B1/94] Length = 299 Score = 112 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64 L ++ + + + G I +E+ D Sbjct: 6 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 65 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122 A A+ +S++SPGG+ I+R I+ + +++K V V ++AAS GY+I+ A + I+ Sbjct: 66 HAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 125 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +S+VGSIGV+ L K+GV + + K PF + ++ ++ + Sbjct: 126 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 185 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + F+ +V E R L G WTG A +GLID +G + Y Sbjct: 186 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 242 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291 K+K P + L + + S + + GL A+W Sbjct: 243 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 294 >gi|254718576|ref|ZP_05180387.1| Clp protease [Brucella sp. 83/13] gi|265983552|ref|ZP_06096287.1| peptidase S49 [Brucella sp. 83/13] gi|264662144|gb|EEZ32405.1| peptidase S49 [Brucella sp. 83/13] Length = 290 Score = 112 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 65/272 (23%), Positives = 113/272 (41%), Gaps = 24/272 (8%) Query: 38 VARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + + + G I +E+ D A A+ +S++SPGG+ I+ Sbjct: 20 IPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADKHAPAVAISINSPGGAPVQSRLIY 79 Query: 88 RAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 R I+ + +++K V V ++AAS GY+I+ A + I+A +S+VGSIGV+ L Sbjct: 80 RRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEIIADPSSIVGSIGVVSASFGFPELL 139 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV + + K PF + ++ ++ + + F+ +V E R Sbjct: 140 KKIGVERRVYTAGSNKVTLDPFQPEKAEDIKRLKALQLEIHATFIDMVKERRAGKLGDNP 199 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L G WTG A +GLID +G + Y K+K P + L Sbjct: 200 DLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG-----DKVKLKLIQPQRGLLGRKLPG 254 Query: 266 LSISSLLEDTIPLMKQTKVQGLW------AVW 291 + ++S + + GL A+W Sbjct: 255 IGMNSGSVEPAQIAAHLG-DGLLCVAEEKAIW 285 >gi|296537377|ref|ZP_06899233.1| signal peptide peptidase SppA [Roseomonas cervicalis ATCC 49957] gi|296262298|gb|EFH09067.1| signal peptide peptidase SppA [Roseomonas cervicalis ATCC 49957] Length = 271 Score = 112 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 66/269 (24%), Positives = 113/269 (42%), Gaps = 19/269 (7%) Query: 21 TVVYFSWSSHVEDNSPHVARIAIRGQIE-----------DSQELIERIERISRDDSATAL 69 V++ D P VA + + G I + + +ER + Sbjct: 1 MVIFSLMRIPFLDRGPRVALVRLSGLIAARGGGIGPAGLSLEGVAPVLERAFALKRLAGV 60 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETS 127 ++ ++SPGGS I I+ + K PVI V + AAS GY ++CA++ IVA +S Sbjct: 61 VLVINSPGGSPVQSSLIAARIRALAEEKKVPVIACVEDAAASGGYWLACAADEIVADPSS 120 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 +VGSIGV+ ++ KLGV + + K+ PF V P +++++ + + Sbjct: 121 IVGSIGVISASFGLEELAAKLGVERRLTTAGGQKSFLDPFRPVEPWQQARLEELLSALHE 180 Query: 188 WFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 F V R L +GR WTG EA +GLID +G + + + Sbjct: 181 EFKAWVRSRRAAHLAAPEEALFNGRFWTGREALPLGLIDRLGNAQSEIRRRFG-----EK 235 Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 + + P + L +++ + E Sbjct: 236 TPVIPFGPKRPPLPMRLLRGAMAVVEERM 264 >gi|254713038|ref|ZP_05174849.1| Clp protease [Brucella ceti M644/93/1] gi|254716609|ref|ZP_05178420.1| Clp protease [Brucella ceti M13/05/1] Length = 306 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64 L ++ + + + G I +E+ D Sbjct: 13 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRATLSLASTAGILEKAFADK 72 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122 A A+ +S++SPGG+ I+R I+ + +++K V V ++AAS GY+I+ A + I+ Sbjct: 73 HAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 132 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +S+VGSIGV+ L K+GV + + K PF + ++ ++ + Sbjct: 133 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 192 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + F+ +V E R L G WTG A +GLID +G + Y Sbjct: 193 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 249 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291 K+K P + L + + S + + GL A+W Sbjct: 250 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 301 >gi|291460898|ref|ZP_06025776.2| protease IV [Fusobacterium periodonticum ATCC 33693] gi|291380138|gb|EFE87656.1| protease IV [Fusobacterium periodonticum ATCC 33693] Length = 588 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 113/267 (42%), Gaps = 23/267 (8%) Query: 32 EDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLSSPGG 78 +D+ V I + G I ++Q E I ++ + A+++ ++SPGG Sbjct: 309 DDSDNIVYVIPLEGDIVEAQTEIFSGEANINVNETIAKLNTAKENKKIKAVVLRVNSPGG 368 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 SA + I ++++ + KPV + +AAS GY IS +N I ++ GS+GV+ Sbjct: 369 SALTSDIIAEKVKELASEKPVYVSMSSVAASGGYYISANANKIYVDRNTVTGSVGVVSVL 428 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 L GV+++ + S + K + + Y F+ +VS R Sbjct: 429 VDYSSLLKDNGVNVEKISEGEYSDLYSADT-FTEKKYNKIYNSNLKVYEDFLNVVSNGRK 487 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK-------- 250 I ++ L++GR+WTG EA K GL D +GG + + + Sbjct: 488 IDKERLKELAEGRVWTGTEAVKNGLADEIGGLYSTIYGVTEDNNIEDYTVVFAKDKIEIG 547 Query: 251 -DWNPPKNYWFCDLKNLSISSLLEDTI 276 + Y D K+L +++ +D + Sbjct: 548 NIYKKYSRYIKMDKKDLIKTTIFKDYL 574 Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 100/281 (35%), Gaps = 32/281 (11%) Query: 3 FVLKKIKTRYV-------MLSLVTLTVVYFSWSSHVEDNSPHVARI----------AIRG 45 FV+K+I + ++ ++ ++ + + ++ Sbjct: 23 FVIKEIFSFFIKLFLFLLVIGVIIGLIFKSIEEKPQVVIKDKAYVVIDLANSYRERSLSS 82 Query: 46 QIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPV 99 + + + + I+ +S DD + +++ L+S S E + + + ++ K V Sbjct: 83 SLFEDDSINFYNLLTNIKNLSFDDKVSGVVLKLNSNSLSYAQSEELAQELSMLRGADKKV 142 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSS 158 I + YL S A I + + S +I F+ + L DK GV + Sbjct: 143 IAYFENVNRKNYYLASYADEIYMPSANSTSVNIYPYFREEFYTKKLSDKFGVKFNIIHVG 202 Query: 159 PMKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216 K+ ++ +A + +++ +Y F+ +VS +R + D + A Sbjct: 203 DYKSYQENLAKDTMSKEAREDSTRILNLNYENFLDIVSLNRKLNRDDLDKIIKDGDLVAA 262 Query: 217 ---EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + LID + + L G + I+D+ Sbjct: 263 SSIDLFNNKLIDKYSYWDNLVTIL---GGKDKLVSIQDYAK 300 >gi|254701204|ref|ZP_05163032.1| Clp protease:peptidase U7:Na+/H+ antiporter NhaA [Brucella suis bv. 5 str. 513] gi|254709545|ref|ZP_05171356.1| Clp protease:peptidase U7:Na+/H+ antiporter NhaA [Brucella pinnipedialis B2/94] gi|261221612|ref|ZP_05935893.1| peptidase S49 [Brucella ceti B1/94] gi|261315361|ref|ZP_05954558.1| peptidase S49 [Brucella pinnipedialis M163/99/10] gi|261317072|ref|ZP_05956269.1| peptidase S49 [Brucella pinnipedialis B2/94] gi|261324527|ref|ZP_05963724.1| peptidase S49 [Brucella neotomae 5K33] gi|261751742|ref|ZP_05995451.1| peptidase S49 [Brucella suis bv. 5 str. 513] gi|261754396|ref|ZP_05998105.1| peptidase S49 [Brucella suis bv. 3 str. 686] gi|265988110|ref|ZP_06100667.1| peptidase S49 [Brucella pinnipedialis M292/94/1] gi|265997575|ref|ZP_06110132.1| peptidase S49 [Brucella ceti M490/95/1] gi|260920196|gb|EEX86849.1| peptidase S49 [Brucella ceti B1/94] gi|261296295|gb|EEX99791.1| peptidase S49 [Brucella pinnipedialis B2/94] gi|261300507|gb|EEY04004.1| peptidase S49 [Brucella neotomae 5K33] gi|261304387|gb|EEY07884.1| peptidase S49 [Brucella pinnipedialis M163/99/10] gi|261741495|gb|EEY29421.1| peptidase S49 [Brucella suis bv. 5 str. 513] gi|261744149|gb|EEY32075.1| peptidase S49 [Brucella suis bv. 3 str. 686] gi|262552043|gb|EEZ08033.1| peptidase S49 [Brucella ceti M490/95/1] gi|264660307|gb|EEZ30568.1| peptidase S49 [Brucella pinnipedialis M292/94/1] Length = 290 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 65/272 (23%), Positives = 112/272 (41%), Gaps = 24/272 (8%) Query: 38 VARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + + + G I +E+ D A A+ +S++SPGG+ I+ Sbjct: 20 IPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADKHAPAVAISINSPGGAPVQSRLIY 79 Query: 88 RAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 R I+ + +++K V V ++AAS GY+I+ A + I+A +S+VGSIGV+ L Sbjct: 80 RRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEIIADPSSIVGSIGVVSASFGFPELL 139 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV + + K PF + ++ ++ + + F+ +V E R Sbjct: 140 KKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQLEIHATFIDMVKERRAGKLGDNP 199 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L G WTG A +GLID +G + Y K+K P + L Sbjct: 200 DLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG-----DKVKLKLIQPQRGLLGRKLPG 254 Query: 266 LSISSLLEDTIPLMKQTKVQGLW------AVW 291 + + S + + GL A+W Sbjct: 255 IGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 285 >gi|209963904|ref|YP_002296819.1| signal peptide peptidase SppA, 67K type [Rhodospirillum centenum SW] gi|209957370|gb|ACI98006.1| signal peptide peptidase SppA, 67K type [Rhodospirillum centenum SW] Length = 595 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 68/285 (23%), Positives = 123/285 (43%), Gaps = 23/285 (8%) Query: 27 WSSHVEDNSPHVARIAIRGQIE---------------DSQELIERIERISRDDSATALIV 71 + + +P VA + G I + ++ + I + D S A++ Sbjct: 287 AAEETDAQAPVVALVVGEGGIARGESDDNPVTGSEGFGATDVAKAINAAAADSSVKAILF 346 Query: 72 SLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 ++SPGGSA E + RA+++ + + KPVI + ++AAS GY +S ++ IVA + G Sbjct: 347 RVNSPGGSAVGSEVVRRAVKRAREQGKPVIVSMGDLAASGGYWVSMDADRIVAQPGTFTG 406 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGVL D LGV+ + P + ++D Y F Sbjct: 407 SIGVLGGKLVTSGLTDMLGVNYGMTSRGRNATMWTTQQPYTPAELDRRAALLDDIYAQFT 466 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 VS RN+P +K ++ GR+WTG +AK++GL+D +GG + + ++ Sbjct: 467 TGVSAGRNLPLEKVQEVAKGRVWTGRQAKEIGLVDALGGYATALSLAREVMGLSADAPVR 526 Query: 251 --DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 + PK+ + + + ++ + Q + A + P Sbjct: 527 VALFPKPKSQFELIMSLFDGGARVQ-----LGQWVLADALAEYRP 566 Score = 95.8 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 91/273 (33%), Gaps = 31/273 (11%) Query: 4 VLKKIKTRYVMLSLVTLTVV-------YFSWSSHVEDNSPHVARIAIRGQIEDSQ----- 51 ++K I + ++ L+ + +V V + + + + Sbjct: 1 MMKVIVRIFAVIGLLAVLLVGGAVAIGMMLSPGRPTLPDSVVLELDLEKPLSEQAPGNPF 60 Query: 52 ------------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV 99 +++ ++R +RD LI + G + + A+++ + Sbjct: 61 AALSSDQTATLHDVVATLDRAARDPRVKGLIARAGTAEGGVATLQELRDAVERFRAAGKF 120 Query: 100 ITEV-----HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 Y ++ A + I VG G+L + P ++ L+KL + + Sbjct: 121 ALVHAETFGEFSPGMQSYYLATAFDEIWLQPVGTVGITGILSERPLLRGTLEKLKIEPQI 180 Query: 155 VKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 K K E E P +M + ++ Y V ++ R +P D D Sbjct: 181 DKRYEYKTAAEQFMEREPTPANEEMTESLIGDLYEQMVAGIAADRKLPIDAVNAAVDRAP 240 Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 EA ++ L+D +G +E+ ++ Sbjct: 241 LLDKEALELKLVDRLGYYDELVETAKERTRSDK 273 >gi|118590806|ref|ZP_01548207.1| putative protease protein [Stappia aggregata IAM 12614] gi|118436782|gb|EAV43422.1| putative protease protein [Stappia aggregata IAM 12614] Length = 285 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 102/240 (42%), Gaps = 11/240 (4%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERI---------ERISRDDSATAL 69 ++ + ++ P + + + G I + E+ A A+ Sbjct: 1 MISSLRRFLPKRFRNDKPVIPVVRLSGAIGGGGPFRSGLSLATASIPLEKAFSMKKAPAV 60 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 + ++SPGGS IF+ I+ + +N K V+ V ++AAS GY+I+ A + I +S Sbjct: 61 ALVINSPGGSPVQSRLIFKRIRDLAKENEKDVLVFVEDVAASGGYMIALAGDEIFVDPSS 120 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 +VGSIGV+ + K+GV + + K PF P+ ++ ++ + + Sbjct: 121 IVGSIGVVAAGFGFTEMIKKIGVDRRVYTAGEKKVTLDPFQPEVPEDIEYIKSLQLEIHE 180 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F+ +V R L G+ WTG ++GL+D +G V + + + + Sbjct: 181 TFIDMVKSRRGDVLSNDPDLFSGKFWTGRTGVELGLVDAIGDLRGVIKERFGDKAEPKLI 240 >gi|319404556|emb|CBI78162.1| protease [Bartonella rochalimae ATCC BAA-1498] Length = 282 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 61/274 (22%), Positives = 112/274 (40%), Gaps = 19/274 (6%) Query: 31 VEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSA 80 N+ + + ++G I +++ A A+ + ++SPGGS Sbjct: 12 FRSNTVQIPVVRLQGAIISSNSSISRTLSLARCASLLDKAFSYKKAPAVALVINSPGGSP 71 Query: 81 YAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 IF+ I+ + N K +T V ++AAS GY+I+CA + I + +S+VGSIGV+ Sbjct: 72 VQSRLIFQRIRDLANEKNKQVLTFVEDVAASGGYMIACAGDEIFSDPSSIVGSIGVVSAS 131 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 L K+GV + + K PF V ++ + + F+ LV E R Sbjct: 132 FGFPELLKKIGVERRVYTAGKNKVTLDPFQPEKKTDVDHLKSLQLEVHQTFIDLVKERRM 191 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + G W+G + ++GLID +G V + + K++ +PPK+ Sbjct: 192 SKLSDDSNIFTGMFWSGKKGVELGLIDELGDIRSVIKKRFG-----DNAKLRLISPPKSL 246 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + + + + + A+W Sbjct: 247 LSSKVPLGISADTAYTAVDGVMMAAEER--ALWQ 278 >gi|294851776|ref|ZP_06792449.1| hypothetical protein BAZG_00691 [Brucella sp. NVSL 07-0026] gi|294820365|gb|EFG37364.1| hypothetical protein BAZG_00691 [Brucella sp. NVSL 07-0026] Length = 290 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 65/272 (23%), Positives = 112/272 (41%), Gaps = 24/272 (8%) Query: 38 VARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + + + G I +E+ D A A+ +S++SPGG+ I+ Sbjct: 20 IPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADKHAPAVAISINSPGGAPVQSRLIY 79 Query: 88 RAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 R I+ + +++K V V ++AAS GY+I+ A + I+A +S+VGSIGV+ L Sbjct: 80 RRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEIIADPSSIVGSIGVVSASFGFPELL 139 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV + + K PF + ++ ++ + + F+ +V E R Sbjct: 140 KKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQLEIHATFIDMVKERRAGKLGDNP 199 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L G WTG A +GLID +G + Y K+K P + L Sbjct: 200 DLFSGLFWTGTAAASLGLIDGLGDMRSFLRKTYG-----DKVKLKLIQPQRGLLGRKLPG 254 Query: 266 LSISSLLEDTIPLMKQTKVQGLW------AVW 291 + + S + + GL A+W Sbjct: 255 IGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 285 >gi|49473968|ref|YP_032010.1| protease sohB [Bartonella quintana str. Toulouse] gi|49239471|emb|CAF25822.1| Protease sohB [Bartonella quintana str. Toulouse] Length = 283 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 60/267 (22%), Positives = 115/267 (43%), Gaps = 19/267 (7%) Query: 38 VARIAIRGQIEDSQELIER----------IERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + + + G I DS ++ R +++ A A+ + ++SPGGS +F Sbjct: 20 IPVVRLHGAIMDSNSMLARTLSLGRCASLLDKAFAYKKAPAVALIINSPGGSPVQSRLLF 79 Query: 88 RAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + I+ + + K V + ++AAS GY+I+CA + I A +S++GSIGV+ FL Sbjct: 80 KRIRDLAEEKNKKVFVFIEDIAASGGYMIACAGDEIFADPSSIIGSIGVVSASFGFPEFL 139 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV + + K PF ++ ++ + + F+ LV E R Sbjct: 140 KKIGVERRVYTAGKNKVTLDPFQPEKKADIEHLKSLQLEVHQTFIDLVKERRATKLSNDS 199 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L G W+G ++ ++GLID + V + + G K++ PPK+ + Sbjct: 200 DLFTGMFWSGRKSVELGLIDGLNDIRSVIKERFGSG-----TKLRLITPPKSLLGPKTPS 254 Query: 266 LSISSLLEDTIPLMKQTKVQGLWAVWN 292 ++ + + + +W Sbjct: 255 GVTANAVYTAVDSALIAAQERT--LWQ 279 >gi|307941593|ref|ZP_07656948.1| Na(+)/H(+) antiporter NhaA [Roseibium sp. TrichSKD4] gi|307775201|gb|EFO34407.1| Na(+)/H(+) antiporter NhaA [Roseibium sp. TrichSKD4] Length = 285 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 62/279 (22%), Positives = 123/279 (44%), Gaps = 27/279 (9%) Query: 30 HVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSA 80 + V + ++G I + +++E+ A A+ + ++SPGGS Sbjct: 12 KFRNEGQTVPVVRLQGAIGMATPLRPGLSLAGVAQQLEKAFSMKKAPAVALVINSPGGSP 71 Query: 81 YAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 I++ I+ + + K V+ V ++AAS GY+I+ A + I+A +S+VGSIGV+ Sbjct: 72 VQSRLIYKRIRDLAEKHEKEVLVFVEDVAASGGYMIAVAGDEIIADPSSIVGSIGVVSAG 131 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 +K ++KLGV + + K PF + P+ ++ ++ + + F+ +V R+ Sbjct: 132 FGMKGLIEKLGVERRVYTAGENKVTLDPFQDEKPEDIEHLKSLQLEIHETFIDMVKARRS 191 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 L G+ W G A+ +GL+D +G +S + ++K + PK Sbjct: 192 DVLSDNPDLFTGKFWAGKTARDLGLVDALGDVRSTLKSRFG-----EKTELKLISAPKGL 246 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA------VW 291 + +S+L M ++ L + +W Sbjct: 247 FGRRTGGNGVSALFG-----MDKSMTDDLVSSVEERALW 280 >gi|18977955|ref|NP_579312.1| protease IV [Pyrococcus furiosus DSM 3638] gi|18893729|gb|AAL81707.1| protease iv [Pyrococcus furiosus DSM 3638] Length = 329 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 117/242 (48%), Gaps = 3/242 (1%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 E + +A + I G I+++ E+++++E I D S +++ + SPGG Sbjct: 76 IQKQNETANGSLAIVPIFGLIDENMALEVVKKLEVIKSDPSIRGVLLWIDSPGGYIGPVR 135 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 AI++ ++++ KP++ + A S GY I+C ++ I+A + VGSIGV++ + + + Sbjct: 136 AIYKEVKELAYIKPIVAYISGYATSGGYYIACGADKIIADPYAQVGSIGVIYVHFNAQKY 195 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + G+ ++ K+ P K + + + P+ +++Q +D + F+ +V E RN+ K Sbjct: 196 YEMNGIEVEVFKTGPYKDMGADWRGLKPEEREIIQKQIDVYFKTFLDVVMEGRNLNETKV 255 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 +DGR W E LID +G + + L +S + P N+ Sbjct: 256 KEYADGRAWFAYE-VNGTLIDDIGDLQYAIEETKKLANLKSANIVIFDVKPSNFEIRGSS 314 Query: 265 NL 266 L Sbjct: 315 AL 316 >gi|328544962|ref|YP_004305071.1| peptidase, S49 (Protease IV) family [polymorphum gilvum SL003B-26A1] gi|326414704|gb|ADZ71767.1| Peptidase, S49 (Protease IV) family [Polymorphum gilvum SL003B-26A1] Length = 285 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 69/264 (26%), Positives = 119/264 (45%), Gaps = 14/264 (5%) Query: 38 VARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 V + ++G I + +ER A A+ + ++SPGGS IFR Sbjct: 20 VPVVRLQGPIGLVTPLRPGLSLASVALPLERAFSVRKAPAVALIINSPGGSPVQSRLIFR 79 Query: 89 AIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 I+ + K++K V+ + ++AAS GY+++ A + IVA S+VGSIGV+ +D Sbjct: 80 RIRDLAEKHKKDVLVFIEDVAASGGYMLALAGDEIVADPASIVGSIGVVSAGFGFTGLID 139 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 K+GV + + KA PF NP+ V ++ + + F+ +V E R Sbjct: 140 KIGVERRVYTAGEKKAILDPFRPENPEDVAHLKALQHEIHEIFIDMVRERRGDILADNPD 199 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI-KDWNPPKNYWFCDLKN 265 L G+ WTG A+ +GL+D +G V + Y V+ + + + + Sbjct: 200 LFSGQFWTGRTARDLGLVDSLGDLSAVLRRRYGEAVEPRLISLPRGLFGRRTGVGVGAAA 259 Query: 266 LSISSLLEDTIPLMKQTKVQGLWA 289 + + L D L+ + + LWA Sbjct: 260 QPLPAGLGD--DLLSAVEARALWA 281 >gi|163795884|ref|ZP_02189848.1| dihydropyrimidinase [alpha proteobacterium BAL199] gi|159178917|gb|EDP63453.1| dihydropyrimidinase [alpha proteobacterium BAL199] Length = 583 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 69/267 (25%), Positives = 113/267 (42%), Gaps = 14/267 (5%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALI 70 Y + + + VA I + G I S ++ E ++ + D + A+I Sbjct: 280 YLAQAGRPNADGTRVALIHLDGTIDRGEGGGLSGRGSVGSAQITETVDEVLADKAVRAVI 339 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + +SSPGGS A + + I +++ PVI +AAS GY + ++ I+A +L Sbjct: 340 LRISSPGGSYVASDTMRHDIGRLRAAGLPVIASFANIAASGGYFAALPADHIIAHPATLT 399 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIG + LDKL V+I V+ S Q ++ ++D Y F Sbjct: 400 GSIGAVGGKVSGSGLLDKLEVAIDRVEVGRNAGMFSSTRPFTSDQRQHLRRMLDDIYADF 459 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V E+R + + ++ GRIWTG +A++VGL+D +GG E Q I Sbjct: 460 AGKVGEARRLSPGEIDAVARGRIWTGEDAQRVGLVDGLGGYAEAMQLTRQTIGLTPDAPI 519 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTI 276 + P+ D I S + Sbjct: 520 ERIRFPRGVGSLDALFEVIRSGEIRGV 546 Score = 70.0 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 81/224 (36%), Gaps = 5/224 (2%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGG 78 + + S S +A + +L++ +++ + D T I LS Sbjct: 44 IVLSIDLSGSVDEASPLDPLAELFPEQAGLGLVDLVDILDQATGDRRVTGAIFDLSGAQI 103 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASA---GYLISCASNIIVAAETSLVGSIGVL 135 + + A+ + + I + Y ++ A + I + L+ G+ Sbjct: 104 GLAQTQELRAAVFRFRAAGKTIVAFADSYEGDGVGPYYLASAFDRIWMQPSGLLVLTGIS 163 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA--VQMMQDVVDSSYHWFVRLV 193 + P + LD++G+ + + K + +E A + V +S Y V + Sbjct: 164 MEVPLARNLLDEVGLLPEFEQRFEFKGAMATLTETTMPAAVRDNLARVANSLYGQVVSGI 223 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 + +R + L D EA+ GL+D +G + + S+ Sbjct: 224 ASTRRLGGTTVSALIDRGPLLAGEARGNGLVDALGYRSDAEASI 267 >gi|261218409|ref|ZP_05932690.1| peptidase S49 [Brucella ceti M13/05/1] gi|261320742|ref|ZP_05959939.1| peptidase S49 [Brucella ceti M644/93/1] gi|260923498|gb|EEX90066.1| peptidase S49 [Brucella ceti M13/05/1] gi|261293432|gb|EEX96928.1| peptidase S49 [Brucella ceti M644/93/1] Length = 290 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 65/272 (23%), Positives = 112/272 (41%), Gaps = 24/272 (8%) Query: 38 VARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + + + G I +E+ D A A+ +S++SPGG+ I+ Sbjct: 20 IPVVRLHGAIMTGGTSLRATLSLASTAGILEKAFADKHAPAVAISINSPGGAPVQSRLIY 79 Query: 88 RAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 R I+ + +++K V V ++AAS GY+I+ A + I+A +S+VGSIGV+ L Sbjct: 80 RRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEIIADPSSIVGSIGVVSASFGFPELL 139 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV + + K PF + ++ ++ + + F+ +V E R Sbjct: 140 KKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQLEIHATFIDMVKERRAGKLGDNP 199 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L G WTG A +GLID +G + Y K+K P + L Sbjct: 200 DLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG-----DKVKLKLIQPQRGLLGRKLPG 254 Query: 266 LSISSLLEDTIPLMKQTKVQGLW------AVW 291 + + S + + GL A+W Sbjct: 255 IGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 285 >gi|52549905|gb|AAU83754.1| protease IV [uncultured archaeon GZfos33H6] Length = 251 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 111/242 (45%), Gaps = 12/242 (4%) Query: 33 DNSPHVARIAIRGQIEDSQE----------LIERIERISRDDSATALIVSLSSPGGSAYA 82 +A I I+G I + LI+ I A+I ++SPGG+ +A Sbjct: 7 KEKGSIAIIPIKGMITSEESGFGLMAASTVLIKDIAEAEIKRKIKAVIFEINSPGGTPFA 66 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + I I+ + KP I V E AAS Y I+ A + IVA E S VGSIG + P + Sbjct: 67 SKEIATCIENI--DKPAIAWVREYAASGAYWIASACDEIVADELSTVGSIGAMSIRPDIG 124 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 + K G+ I+++++ K P+ ++ + ++++ +D F+ V+++R + Sbjct: 125 ELMKKFGIDIETLRTGRYKGMGLPYEKLTEEERELLKKELDEIQDNFLNAVAKNRKLDES 184 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 K LS +++ G EAK++GLID +GG+E + + + + + Sbjct: 185 KMKELSTAKVYLGREAKEMGLIDHLGGKELAIRIAKERSGIRKEKIVDYGERKRKGLLRR 244 Query: 263 LK 264 Sbjct: 245 AM 246 >gi|110633065|ref|YP_673273.1| peptidase S49 [Mesorhizobium sp. BNC1] gi|110284049|gb|ABG62108.1| peptidase S49 [Chelativorans sp. BNC1] Length = 286 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 69/278 (24%), Positives = 117/278 (42%), Gaps = 20/278 (7%) Query: 29 SHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGG 78 + +S + + + G I +E+ SA A+ +S++SPGG Sbjct: 11 KSLRSDSVTIPVVRLHGTIMAGGSPMRQSLSLASTAGLLEKAFSF-SAPAVAISINSPGG 69 Query: 79 SAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 S I+R I+ + + +K V V ++AAS GY+I+ A + I++ +S+VGSIGV+ Sbjct: 70 SPVQSRLIYRRIRDLAEERKKNVFVFVEDIAASGGYMIALAGDEIISDPSSIVGSIGVVS 129 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + + K+GV + S KA PF + V+ ++ + + + F+ LV E Sbjct: 130 AGFGFQDLIKKIGVERRVHTSGRNKAILDPFQPEKEEDVERLKALQEEVHQTFISLVRER 189 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R L G WTG +GL+D VG + Y ++K +PP+ Sbjct: 190 RGAKLANDDDLFTGLFWTGERGLSLGLVDAVGDMRSFLKHRYG-----EKTRLKLVSPPR 244 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGL--WAVWN 292 + L + D VQ L A+W Sbjct: 245 GLFGRRLGFFGLDMKETDIAAAAASGLVQALEEQALWR 282 >gi|149186505|ref|ZP_01864817.1| periplasmic serine protease [Erythrobacter sp. SD-21] gi|148829732|gb|EDL48171.1| periplasmic serine protease [Erythrobacter sp. SD-21] Length = 626 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 104/220 (47%), Gaps = 11/220 (5%) Query: 38 VARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 + + I G+I D + + ++ D L+V + SPGGSA A E I Sbjct: 314 IGVVTIAGEIVDGEAGPGTAGGTRIATLLDEAL-DQDFAGLVVRVDSPGGSALASEEIRN 372 Query: 89 AIQKVKNRKPVI-TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 AI + K + + + +AAS GY ++ ++ I A ++ GSIG+ P + Sbjct: 373 AILRHKAKDIPVAVSMANVAASGGYWVATPADRIFAEPETITGSIGIFALIPTFEDAAAS 432 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 +GV+ V++ P+ +P P + P+ +++Q ++ Y F+ V+ +R + ++ + Sbjct: 433 IGVNSDGVQTGPLSGQPDPIAGFTPEVDRILQASIEDGYTDFLTRVANARQMTLEQVDRV 492 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 GR+W G A+++ L+D GG + + + A + Sbjct: 493 GQGRVWDGGTARQIRLVDEYGGMADALEWVAAQAQLGDEK 532 Score = 73.1 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 38/245 (15%), Positives = 82/245 (33%), Gaps = 37/245 (15%) Query: 39 ARIAIRGQIED----------------------SQELIERIERISRDDSATALIVSLSSP 76 + + G I + +++L+ I + D+ TA+++ L Sbjct: 48 LLLELDGVIVEERTPIDPFAALLSGSAPVGEYQARDLVRAINAAASDERITAVVLDLDRF 107 Query: 77 GG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 G + A+ +V+ + A G ++ ++ + G Sbjct: 108 MGAGQVHLAEVGAALDRVRAADKPVLAYATAYADDGVFLAAHASEVWVNPQGGAFVAGPG 167 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLV 193 Y LDKL V+ + K K+ P++E ++ A + Q + + + + V Sbjct: 168 GNRLYYAGLLDKLKVNARVYKVGTYKSAVEPYTESSMSEPARENAQALYGALWEEWQANV 227 Query: 194 SESRNIPYDKTLVLSDGRI--W-------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 ++R L L G W A L+D +G + E + + L + Sbjct: 228 KKAR---PAADLKLVSGDPAAWVEAAKGDLATAALNARLVDKLGSRTEFNERVVELVGED 284 Query: 245 SIRKI 249 ++ Sbjct: 285 EWSEL 289 >gi|292656116|ref|YP_003536013.1| proteinase IV-like protein [Haloferax volcanii DS2] gi|291372078|gb|ADE04305.1| proteinase IV-like protein [Haloferax volcanii DS2] Length = 299 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 52/261 (19%), Positives = 100/261 (38%), Gaps = 20/261 (7%) Query: 21 TVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGG 78 + VA I++ G I + +L E + ++S A+++ + SPGG Sbjct: 27 AFLAPVVYDAAAPTPDRVAVISVDGTITSYTADQLEEDLHEARENESIKAVVLQVDSPGG 86 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 SA A E ++ A+ + PV++ V AS Y S I +S++GS+GV Sbjct: 87 SAAASEQMYLAVNRTAQEMPVVSSVEGTGASGAYYTMLPSESIYVTPSSVIGSVGVRGSA 146 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P +G S +++ P KA + + H FV V E R Sbjct: 147 P--------IGGSSNEIRTGPDKASMTLDHREAQIE---------TLKHAFVGSVMEHRG 189 Query: 199 IPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 ++ +++TGA A + G D +G + + ++ ++ ++ Sbjct: 190 DELSLSREEVAYAKVYTGARATQNGYADDIGTLQTAIDRAASEAGLENYEVVEKEPSTRS 249 Query: 258 YWFCDLKNLSISSLLEDTIPL 278 S+++ + P+ Sbjct: 250 GIILLSSQNGNSTVVVEESPI 270 >gi|254420657|ref|ZP_05034381.1| signal peptide peptidase SppA, 67K type [Brevundimonas sp. BAL3] gi|196186834|gb|EDX81810.1| signal peptide peptidase SppA, 67K type [Brevundimonas sp. BAL3] Length = 592 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 66/289 (22%), Positives = 106/289 (36%), Gaps = 19/289 (6%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED---------------SQELIERIERIS 61 +V +A + G I S + E I Sbjct: 276 IVEFDQYTSDKGERTGSGKNAIAIVGGEGAIVTGRSDGGGFGGGSSIHSDDTAEAIYDAI 335 Query: 62 RDDSATALIVSLSSPGGSAYAGEAI-FRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 D A++ +SSPGGS A E I KPV+ + AAS GY IS ++ Sbjct: 336 EDKGVKAIVFRVSSPGGSPEASEQILAAVRAAKAAGKPVVVSMGAYAASGGYWISSEADW 395 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-PMKAEPSPFSEVNPKAVQMMQ 179 IVA ++L GSIGV + L + GV ++ + P SP Sbjct: 396 IVAQPSTLTGSIGVFGGKFVIADALGRFGVDMRELTVGGPYADAFSPTQSFTNSQRAAFA 455 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 +D Y F+ V+ R + + ++ GR+WTGA+A +GL+D +GG E A Sbjct: 456 GSMDRIYDDFITRVATGRKLEPARVREIAKGRVWTGAQALPLGLVDQLGGLTEAVAKAKA 515 Query: 240 LGVDQSIRKIKD--WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 L + ++ + K+ W + + S + ++ Sbjct: 516 LAKIPAGESVRFKHFPKSKSPWEALSEMFGVQSEAAQALVMLGGVMADP 564 Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 32/301 (10%), Positives = 98/301 (32%), Gaps = 27/301 (8%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIR------------------G 45 VL + + ++ + ++ + + + +P + + + G Sbjct: 8 VLGVFTGLILFVVVIPVVLLTVAIAGSSKPTAPATSVLELDLREGVSDQPSTNPFAAFGG 67 Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 ++++ + + D S AL++ L G + + + +A+++ + + + Sbjct: 68 SGLSVTQVVDGLAQAEEDKSVKALLIRLPESGMTPATADELRQAVRRFRASGKPVIAHSQ 127 Query: 106 MAASA-----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160 A Y++ +++ + T+ + G ++ +K GV + Sbjct: 128 GFAPMGAVMSTYMVGASASELWMQNTAGFQATGFSADSVFLGRAFEKYGVRADFEQRYEY 187 Query: 161 KA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEA 218 K S+ + M + S Y + ++ R + + ++ +A Sbjct: 188 KNAVNEYTQSDYTGPHREAMTAWMTSLYDSALANAAQDRKTTPAALKTVIEAGPYSAEQA 247 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278 LID +G EE + +I +++ + + + + Sbjct: 248 LANKLIDKIGQVEEAEAEIKRRAG--KGAEIVEFDQYTSDKGERTGSGKNAIAIVGGEGA 305 Query: 279 M 279 + Sbjct: 306 I 306 >gi|126740611|ref|ZP_01756298.1| peptidase, family S49 [Roseobacter sp. SK209-2-6] gi|126718412|gb|EBA15127.1| peptidase, family S49 [Roseobacter sp. SK209-2-6] Length = 265 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 61/250 (24%), Positives = 109/250 (43%), Gaps = 14/250 (5%) Query: 33 DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 P V+ + + G I L +ER A+ + ++SPGGS Sbjct: 9 KKPPLVSVVRLNGAIGMPGRGSLSDAALAPVLERAFSKGKPAAVALEINSPGGSPVQSSL 68 Query: 86 IFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I IQ++ K PVI V ++AAS GY ++ +++ I A +S+VGSIGV+ Sbjct: 69 IGARIQRLAKEKNVPVIAFVEDVAASGGYWLAASADEIWADASSVVGSIGVISAGFGAHE 128 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L++ G+ + + K+ PF NP+ V ++ +++ + F+ V+E R D Sbjct: 129 LLNRHGIERRVYTAGESKSMLDPFRAENPEDVTRLKGLLEDIHQNFIDHVTERRGDKLDG 188 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 + L G +W A +GLID +G + + + +I+ + K + Sbjct: 189 SHKLFTGEVWLARRAVDLGLIDGIGHLQPALKQRFG-----DKVQIRRYGMKKPFLSRFG 243 Query: 264 KNLSISSLLE 273 L+ +L Sbjct: 244 MRLAQDALTG 253 >gi|157964478|ref|YP_001499302.1| Signal peptide peptidase SppA, 36K type [Rickettsia massiliae MTU5] gi|157844254|gb|ABV84755.1| Signal peptide peptidase SppA, 36K type [Rickettsia massiliae MTU5] Length = 304 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 114/265 (43%), Gaps = 18/265 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPG 77 ++S ++ +A + + G I + L E IE+ + AL + ++SPG Sbjct: 30 FASVFGNSKEVIAVLRLSGVIGKVSTMQSGLTLESLNELIEKAFKIKKLKALCLIINSPG 89 Query: 78 GSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 GS E I + I+ + +N+ + + + +MAAS GY ++C+ + I A +S++GSIGV+ Sbjct: 90 GSPVQSELIAKRIRDLAKENKIKIYSFIEDMAASGGYWLACSGDRIYALPSSVIGSIGVV 149 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 ++KLG+ + K+ PF +N +++++++ Y F+ V Sbjct: 150 SSGFGFHEAINKLGIERRVYTEGKNKSVLDPFKPINKDDLKIIKNLQKQVYEHFIEYVKT 209 Query: 196 SRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 R + + +G W G A GLID +G V + + + + Sbjct: 210 RRAGKLTQQDEILFNGEFWAGQTALDYGLIDGIGDMYSVMKEKFGDNIKF------QYLY 263 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLM 279 K W + L ++ + Sbjct: 264 AKQSWLKKKLGMGSKILTDNFANSL 288 >gi|196018409|ref|XP_002118798.1| hypothetical protein TRIADDRAFT_62805 [Trichoplax adhaerens] gi|190578184|gb|EDV18716.1| hypothetical protein TRIADDRAFT_62805 [Trichoplax adhaerens] Length = 783 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 59/200 (29%), Positives = 124/200 (62%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 + ++QE+I+ + +++ D++ A++V+++S GG+ GE+++R ++++ KPV+ + E Sbjct: 584 TLMENQEMIKSLNKLANDNNVKAVLVNINSTGGTGAGGESLYRELRRIAKNKPVVASIGE 643 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 + ASAGY+++ ++ I A + SLVGSIGV+ + K G++++ +KSSP+K P+ Sbjct: 644 IGASAGYMVALGTDRIFAYDISLVGSIGVIIMNFEINELAKKHGINLELIKSSPLKGVPN 703 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 F +++ + + +Q++ + S +F++LV RN+ + +S+G+I+ G +A K+ LID Sbjct: 704 YFEKLDNQQKEYVQNLANESNQYFIKLVKNRRNLSEEDLKAVSNGKIFIGTKAMKLKLID 763 Query: 226 VVGGQEEVWQSLYALGVDQS 245 VG + L ++ Sbjct: 764 QVGDMNDAINWLKQKDDLKN 783 >gi|254796774|ref|YP_003081610.1| signal peptide peptidase SppA, 36K type [Neorickettsia risticii str. Illinois] gi|254589965|gb|ACT69327.1| signal peptide peptidase SppA, 36K type [Neorickettsia risticii str. Illinois] Length = 308 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 77/299 (25%), Positives = 141/299 (47%), Gaps = 15/299 (5%) Query: 2 EFVLKKIKTRYVMLSLVTLTVVYFSWSSH------VEDNSPHVARIAIRGQIEDSQELIE 55 L+K T + +++ + + V+ S ++P++ R+ G I Q+L+ Sbjct: 11 NSSLRKRLTFWKVVTFIVIGVLLVVSGSSFRGGLFDSFSAPYIGRVVFSGII--DQDLVR 68 Query: 56 RIERI--SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 + + + A+I+ + S GG A A EA++ A++ V KPV+ + M AS Y+ Sbjct: 69 NSQFASFADNPKIKAVILHVDSGGGGAAASEALYNAVRSVSLVKPVVVVANGMMASGAYM 128 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 ++ A+ IVA +S+VGSIG++ Q P K+G+ + V+S +KA PS E + Sbjct: 129 VAMAAEHIVAYNSSIVGSIGMILQAPNFHEIGKKVGIKMDVVRSGRLKAFPSILEEFTKE 188 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 A M+ + + F+ +V E R I + ++ G+I+TG EA + L+D +G + Sbjct: 189 ARSSMEHSISVANEHFLSMVQERRKITDARVMSEIATGKIFTGKEALEFALVDEIGDETN 248 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 + L +G+ IR + + + +S L E + GL AV+ Sbjct: 249 AVRWLKEMGITGKIRDLGFVSGRGFRVDKISPSSYLSVLNE----FFRYLYSPGLLAVF 303 >gi|222147714|ref|YP_002548671.1| proteinase sohB [Agrobacterium vitis S4] gi|221734702|gb|ACM35665.1| proteinase sohB [Agrobacterium vitis S4] Length = 288 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 61/265 (23%), Positives = 114/265 (43%), Gaps = 13/265 (4%) Query: 38 VARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + + + G I + +E+ + + A+++SL+SPGGS IF Sbjct: 20 IPVVRLHGAIMSGGSRFRPALNLAAIAPLLEKAFKLKDSPAVVLSLNSPGGSPVQSRMIF 79 Query: 88 RAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + I+ + ++ K V+ V ++AAS GY+I+ A + I+A TS+VGSIGV+ L Sbjct: 80 QRIRTLADEHSKTVLVFVEDVAASGGYMIALAGDEIIADPTSIVGSIGVVSGGFGFPELL 139 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV + + K PF ++ ++ + + F+ +V R I + Sbjct: 140 KKIGVERRVYTAGENKVMLDPFQPEKQSDIEYLKTLQLDIHDVFIDMVKTRRGIRLNDNP 199 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL-GVDQSIRKIKDWNPPKNYWFCDLK 264 L G WTG + ++GL+D +G E ++ Y + I + + Sbjct: 200 ELFSGLFWTGRKGFELGLVDGLGSMREEIKARYGKTARLELISGARGLFGRRLSGVDTAF 259 Query: 265 NLSISSLLEDTIPLMKQTKVQGLWA 289 + L++ + + LWA Sbjct: 260 SAPSDIGSAAAAGLVETLEDRALWA 284 >gi|294783430|ref|ZP_06748754.1| protease IV [Fusobacterium sp. 1_1_41FAA] gi|294480308|gb|EFG28085.1| protease IV [Fusobacterium sp. 1_1_41FAA] Length = 578 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 14/231 (6%) Query: 32 EDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLSSPGG 78 E+++ V I + G I +SQ E I ++ + A+++ ++SPGG Sbjct: 299 ENSNNIVYVIPLEGDIVESQTEIFSGEAAINVNETIAKLNTAKENKKIKAVVLRVNSPGG 358 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 SA + I ++++ + KPV + +AAS GY IS +N I ++ GS+GV+ Sbjct: 359 SALTSDIIAEKVKELASEKPVYVSMSSIAASGGYYISANANKIYVDRNTVTGSVGVVSVL 418 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 L GV+++ + S + K + + Y F+ +VS+ R Sbjct: 419 VDYSSLLKDNGVNVEKISEGEYSDLYSADT-FTEKKYNKIYNSNLKVYEDFLNVVSKGRK 477 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 I +K L++GR+WTG EA K GL D +GG + + Sbjct: 478 IDKEKLKELAEGRVWTGTEAVKNGLADEIGGIYSTIYGVTEDNNIDDYTVV 528 Score = 68.5 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 101/281 (35%), Gaps = 32/281 (11%) Query: 3 FVLKKIKTRY--------VMLSLVTLTVVYFSWSSHVEDNSPHVARIAI----------- 43 F++K+I + + V+L+++ L V V I + Sbjct: 13 FIIKEIFSFFIKLFLFLLVILAIIGLIVQSIEEKPQVVIKDNAYVVIDLADSYKERLLTS 72 Query: 44 ---RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPV 99 + L+E I+ IS DD + +++ ++S S E + + ++ K V Sbjct: 73 SLFEDNAINFYTLLENIKNISFDDKVSGVVLKINSNSLSYAQSEELAHELSMLRGADKKV 132 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSS 158 I + YL S A I + + S +I F+ + L DK GV + Sbjct: 133 IAYFENVNRKNYYLASYADEIYMPSANSTSVNIYPYFREEFYTKKLSDKFGVKFNIIHVG 192 Query: 159 PMKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216 K+ ++ +A + ++D +Y F+ +VS +R + D + A Sbjct: 193 DYKSYQENLAKDSMSKEAREDSTRILDLNYENFLDIVSLNRKLNRDDLDKIIKDGDLVAA 252 Query: 217 ---EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + LID + + L G + I+D+ Sbjct: 253 SSIDLFSNKLIDKYLYWDNLVTLL---GGKDKLISIQDYAK 290 >gi|89056413|ref|YP_511864.1| peptidase S49 [Jannaschia sp. CCS1] gi|88865962|gb|ABD56839.1| peptidase S49 [Jannaschia sp. CCS1] Length = 278 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 15/248 (6%) Query: 33 DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + P V+ I ++G I + IE+ A+ + ++SPGGS Sbjct: 21 SSDPRVSVIRLQGAIASGTRGGINDATFAPVIEKAFAKGKPKAVALVMNSPGGSPVQSAL 80 Query: 86 IFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + I+++ K PV V ++AAS GY ++CA++ I +S+VGSIGV+ Sbjct: 81 VAARIRRLAEEKDIPVHAFVEDVAASGGYWLACAADDIWVDPSSIVGSIGVVSAGFGFVE 140 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L KLGV + + K+ PFS + V+ ++ + + F+ V R Sbjct: 141 ALGKLGVERRVHTAGENKSILDPFSPEKDEDVERLKSLQTDIHASFIDHVKTRRGDRLKD 200 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 + G WTG ++GL D + + + + + PK L Sbjct: 201 HPEMFTGAFWTGTRGVELGLADGIAHL------VPKMKEVYGDKVTFTVHGPKKPLIPRL 254 Query: 264 KNLSISSL 271 ++ L Sbjct: 255 GAQVLADL 262 >gi|308049662|ref|YP_003913228.1| signal peptide peptidase SppA, 67K type [Ferrimonas balearica DSM 9799] gi|307631852|gb|ADN76154.1| signal peptide peptidase SppA, 67K type [Ferrimonas balearica DSM 9799] Length = 611 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 12/268 (4%) Query: 33 DNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAYAG 83 +A + +G I + + +D+ A+++ + S GGSAYA Sbjct: 320 QGDNQIAVVVAKGTILNGDQPAGTIGGVSTSRLLREARQDEKVKAVVLRVDSGGGSAYAS 379 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + + ++ KPVI + +AAS GY IS ++ I A T++ GSIG++ + Sbjct: 380 EQIRQEVLALQAAGKPVIASMGSVAASGGYWISANADRIFAQPTTITGSIGIIGLITTFE 439 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 +GV V ++ M + +++Q +D Y F++LVS +R++P + Sbjct: 440 DSAAAVGVYADGVGTTEMAGLSVL-RPLPDGFKRIVQQGLDKGYQDFIQLVSSARDLPLE 498 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFC 261 + ++ GRIW+G A +GL+D +G E S AL + ++ Sbjct: 499 QVDNIAQGRIWSGKAALDLGLVDEMGDLEAAITSAAALAQLEQYETRVIGPTLSPEQEML 558 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + L Q + L A Sbjct: 559 QQIFGAAQAYLPQVETPAWQKVLNSLTA 586 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 90/276 (32%), Gaps = 33/276 (11%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51 +K+ V +++ + +V + I + G + + + Sbjct: 23 RKVIVNLVFFAVLAVVIVAMTGDELEPVPDGGALVIKLDGILVEQKRPLDPIELITGQSS 82 Query: 52 ---------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102 +L+ IE + DD T +++ G + I +A+Q + + Sbjct: 83 DEPKEILMADLLLAIEEAAADDRITGIVLKPGQLSGGLSKLQEIGKALQAFQQTGKPVIA 142 Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 YL++ ++ I +V G Y K L KL ++ + K+ Sbjct: 143 QAGWLDQGNYLVASFADEIQLNPGGVVSIDGFGIYQVYFKEALAKLKINTHLFRVGKYKS 202 Query: 163 EPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRI 212 P+ ++ +A + V+D + +V V+++R+I L Sbjct: 203 FAEPYTRDSMSDEAKEANIAVLDDLWGAYVTTVAQNRDIDPALLAPSLDSLNAQLEAVGG 262 Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 A GL+D + E+ L + + Sbjct: 263 DMAKLALNTGLVDALMTDIEMRDRLMEEFGTEPDDE 298 >gi|226363309|ref|YP_002781091.1| S49 family peptidase [Rhodococcus opacus B4] gi|226241798|dbj|BAH52146.1| putative S49 family peptidase [Rhodococcus opacus B4] Length = 288 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 63/272 (23%), Positives = 115/272 (42%), Gaps = 21/272 (7%) Query: 31 VEDNSPHVARIAIRGQIED----------SQELIERIERISRDDSATALIVSLSSPGGSA 80 + V + ++G I ++ + E + R S A A+ + ++SPGGS Sbjct: 21 GGSGAGVVPVVRLQGMIASGGAGFGRVLSAESVEEPLRRASTTHGAKAVALLINSPGGSP 80 Query: 81 YAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 E I I+++ PV+ ++ AS GY ++CA++ I A TS+VGS+GV+ Sbjct: 81 TQSEYIAARIRQLATEHELPVLAFCEDVVASGGYWLACAADEIYATATSVVGSVGVISAG 140 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 +D+LG+ + + KA PF + VQ ++ + + + F V R Sbjct: 141 FGFSELIDRLGIERRLHSAGEAKARLDPFFAEKSEDVQWLEQIQEGIHDEFRDWVVGRRG 200 Query: 199 IPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 L DG +W G A ++G++D +G EV + + + P+ Sbjct: 201 DKLKAAEAELFDGDVWLGRRAVELGIVDGIGTLREVVEKRFPDA-------TIEMTGPRR 253 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 F L L +S + T ++ + W+ Sbjct: 254 SLFAKL-GLPAASWDDVTAAILGAANARVAWS 284 >gi|183221224|ref|YP_001839220.1| S49 family peptidase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911315|ref|YP_001962870.1| signal peptide peptidase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775991|gb|ABZ94292.1| Signal peptide peptidase (protease IV) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779646|gb|ABZ97944.1| Putative petidase S49, protease IV family [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 544 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 60/298 (20%), Positives = 123/298 (41%), Gaps = 26/298 (8%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------------- 51 +KI +R + T+ ++ E V + + G I Sbjct: 249 RKIFSRVYPIVYQTVKEFSLFPKANKE-----VVILPLEGGITGGDYLHKNRENGKIEAF 303 Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 LI ++ + D A+I+ +SSPGGSA+ E I + I ++K KPV + AS G Sbjct: 304 SLIPTLKALGEDKKIKAVILEISSPGGSAFYSEQIHQEILELKKTKPVTAYFKDTVASGG 363 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ I A+ + GSIG + ++ K ++ ++V P + S F ++ Sbjct: 364 YYIATAADYITASPVCITGSIGAVSIRANLQKLYKKFHLNKEAVGFYPFRDIHSEFQPLS 423 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 ++V ++ + F + VSE R+IP + + GR++ + ++D +GG Sbjct: 424 KQSVLYLESQIKKIEGLFYKRVSEGRDIPLKELPNIGMGRVYLPT--TENKIVDSLGGLL 481 Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + + + + I + + + + + L + +++ L + Sbjct: 482 DAIEFVKEKLGGKGI-----YLTEELPSYNLKNKIPLLGGLLSELKILESLGEVSLLS 534 Score = 38.4 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 70/217 (32%), Gaps = 8/217 (3%) Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 ++ L +SL + I ++ +++ I + L+ +N Sbjct: 75 KNPKIKTLDISLPPLEWTLSEFYEIRNELKAIRDSGKTIRMFAKEGGMGTLLLLTIANEA 134 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVNPKAVQMMQ 179 A S + + + FL G+ +++ S P K+ F+ E + +A + ++ Sbjct: 135 YLAPESEFTVLLPSAEPMFFGKFLKTWGIEVQAFASGPYKSFAESFTRGEFSKEARKNLE 194 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 ++ + + ++ + + + + G+I + + E + Sbjct: 195 SLILNLRTLLLESLTNGKKS----LEPFFYKPMLSADDLLTEGVIHGIKTESEFFSE--D 248 Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 + + I + F + LE I Sbjct: 249 RKIFSRVYPIVYQTVKEFSLFPKANKEVVILPLEGGI 285 >gi|254461803|ref|ZP_05075219.1| peptidase, family S49 [Rhodobacterales bacterium HTCC2083] gi|206678392|gb|EDZ42879.1| peptidase, family S49 [Rhodobacteraceae bacterium HTCC2083] Length = 265 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 64/260 (24%), Positives = 116/260 (44%), Gaps = 19/260 (7%) Query: 33 DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + P VA + + G I + Q L +++ A+ + ++SPGGS Sbjct: 9 KSEPVVAVVRLSGAIGMSGRGALNDQSLAPVLDKAFTRGKPDAVALQINSPGGSPVQSSL 68 Query: 86 IFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I I+++ +N PVI V ++AAS GY ++ A++ I A E+S++GSIGV+ Sbjct: 69 IGARIRRLADENEIPVIAFVEDVAASGGYWLAAAADEIYADESSVLGSIGVISAGFGAHV 128 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL K G+ + + K+ PF+ + V ++ +++ + F+R V + R DK Sbjct: 129 FLAKQGIERRVYTAGKSKSMMDPFTPETEEDVARVKGMLEQIHTNFIRYVQKRRGEKLDK 188 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L G IW G AK VGLID + ++ + K + P + + Sbjct: 189 GSELFTGDIWIGDVAKDVGLIDGIAHLVPAMKARFG-----DKVTFKRYGPKRGFMSRI- 242 Query: 264 KNLSISSLLEDTIPLMKQTK 283 + + D + +++ Sbjct: 243 ----GAQIATDALGGIEERA 258 >gi|254464567|ref|ZP_05077978.1| peptidase S49 [Rhodobacterales bacterium Y4I] gi|206685475|gb|EDZ45957.1| peptidase S49 [Rhodobacterales bacterium Y4I] Length = 279 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 63/264 (23%), Positives = 110/264 (41%), Gaps = 14/264 (5%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIV 71 L + P VA + + G I L +ER R A+ + Sbjct: 9 ALYIGAMRIHLPFLKRQPLVAVVRLNGAIGMPGRGSLSDAALAPILERAFRKGKPAAVAL 68 Query: 72 SLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 ++SPGGS I I+++ PV V ++AAS GY ++ A++ I A +S++ Sbjct: 69 EINSPGGSPVQSSLIGARIRRLAKELGIPVYAFVEDVAASGGYWLAAAADEIWADASSVL 128 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GS+GV+ L + GV + + K+ PF NP+ VQ ++ +++ + F Sbjct: 129 GSVGVISAGFGAHVLLARQGVERRVYTAGESKSMLDPFRPENPEDVQRLKVILNDIHANF 188 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 + V+E R L G IW A+++GLID +G + Q + + Sbjct: 189 IDHVTERRGAKLKNDENLFTGEIWLARRAEELGLIDGIGHLKPKMQERFG-----EKVRF 243 Query: 250 KDWNPPKNYWFCDLKNLSISSLLE 273 + + K +W L+ +L Sbjct: 244 RRYGLKKPFWSRFGMRLAQDALAG 267 >gi|82699311|ref|YP_413885.1| Clp protease [Brucella melitensis biovar Abortus 2308] gi|237814870|ref|ZP_04593868.1| Na+/H+ antiporter NhaA [Brucella abortus str. 2308 A] gi|82615412|emb|CAJ10381.1| Clp protease:Peptidase U7:Na+/H+ antiporter NhaA [Brucella melitensis biovar Abortus 2308] gi|237789707|gb|EEP63917.1| Na+/H+ antiporter NhaA [Brucella abortus str. 2308 A] Length = 763 Score = 110 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64 L ++ + + + G I +E+ D Sbjct: 470 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 529 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122 A A+ +S++SPGG+ I+R I+ + +++K V V ++AAS GY+I+ A + I+ Sbjct: 530 HAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 589 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +S+VGSIGV+ L K+GV + + K PF + ++ ++ + Sbjct: 590 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 649 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + F+ +V E R L G WTG A +GLID +G + Y Sbjct: 650 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 706 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291 K+K P + L + + S + + GL A+W Sbjct: 707 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 758 >gi|15964602|ref|NP_384955.1| putative protease protein [Sinorhizobium meliloti 1021] gi|307309348|ref|ZP_07589011.1| peptidase S49 [Sinorhizobium meliloti BL225C] gi|307320084|ref|ZP_07599505.1| peptidase S49 [Sinorhizobium meliloti AK83] gi|15073780|emb|CAC45421.1| Probable proteinase [Sinorhizobium meliloti 1021] gi|306894299|gb|EFN25064.1| peptidase S49 [Sinorhizobium meliloti AK83] gi|306900217|gb|EFN30835.1| peptidase S49 [Sinorhizobium meliloti BL225C] Length = 288 Score = 110 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 59/284 (20%), Positives = 113/284 (39%), Gaps = 13/284 (4%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATA 68 + + I + G I + + +E+ A A Sbjct: 1 MAGFFRKLMPKRFRRDGVTIPAIRLHGAIMAGGSPLRPVLNLATVAPLLEKAFSVKEAPA 60 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAET 126 + +S++SPGGS I++ I+ + K + V ++AAS GY+I+ A + I+A T Sbjct: 61 VAISINSPGGSPVQSRLIYQRIRDLAQEKRKRVLIFVEDVAASGGYMIALAGDEIIADPT 120 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 S+VGSIGV+ L K+GV + + K PF + ++ ++ + + Sbjct: 121 SIVGSIGVVSGGFGFPDLLKKIGVERRVYTAGENKVVLDPFQPEKERDIEFLKGLQLEIH 180 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE-EVWQSLYALGVDQS 245 F+++V R L G WTG +++GL+D +G EV + + Sbjct: 181 DIFIQMVKSRRGSLLADHPDLFSGLFWTGQRGQELGLVDALGDIRGEVKKRYGEKARLEL 240 Query: 246 IRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 I+ + + ++ + L++ + + LWA Sbjct: 241 IQPARSLFGRRQPGAAVAGAITGPLVASAAAGLVEAVEERALWA 284 >gi|300022742|ref|YP_003755353.1| peptidase S49 [Hyphomicrobium denitrificans ATCC 51888] gi|299524563|gb|ADJ23032.1| peptidase S49 [Hyphomicrobium denitrificans ATCC 51888] Length = 429 Score = 110 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 56/278 (20%), Positives = 119/278 (42%), Gaps = 16/278 (5%) Query: 26 SWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVS 72 S S +A + I G + + + E++++ S D +++ Sbjct: 55 SQRGPYRVTSNGIAIVPIIGSLVNRGAYIGASSGLTSYEGISEQLKKASTDSEVRGILLD 114 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 +++PGG A + I +++ +KPV+ V +MA SAGY I+ A++ I +T ++GSI Sbjct: 115 MNTPGGEAAGTFEVSNLIMEIRKKKPVVAMVADMACSAGYAIASAASQIYTTQTGMMGSI 174 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GV++ + + G+ + + KAE +PF ++ Q ++ + F+ Sbjct: 175 GVVWVHFDRSLQMQNEGIKPTILHAGARKAEGNPFEPLSRVTKANFQAEIEKLHSLFIET 234 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL-YALGVDQSIRKIKD 251 V + R + L ++ ++ G +A K+GL D V + V + + + + + Sbjct: 235 VLDGRPSLKEADLRATEAAVFMGQDAVKIGLADGVSTFDRVLEVMSQQITKLPAAPAGYE 294 Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 NP + + +S + + + G+ A Sbjct: 295 SNPKEKKAMTNQPAAEAASGTDQA--ALDAARADGVKA 330 >gi|332527653|ref|ZP_08403699.1| protease IV [Rubrivivax benzoatilyticus JA2] gi|332112056|gb|EGJ12032.1| protease IV [Rubrivivax benzoatilyticus JA2] Length = 604 Score = 110 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 57/230 (24%), Positives = 110/230 (47%), Gaps = 10/230 (4%) Query: 44 RGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 G I D + + R DD+ A+++ ++SPGGSA+ E I R ++ + Sbjct: 318 EGMIVDGEAAPGTVGGLSTAALVRRARDDDAVRAIVLRVNSPGGSAFGSELIRRELELAR 377 Query: 95 N-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 KPV+ + ++AAS G+ IS +++ IVA ++ GSIGV+ P + L++LG+ + Sbjct: 378 AAGKPVVVSMGDVAASGGFWISTSADEIVADPATITGSIGVIAVLPTAERALERLGLHTE 437 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 ++S P + ++ + Q++Q + Y F+ V+ +R ++ + GR+W Sbjct: 438 GYRTSWAVDAYDPRAPLDARTEQVLQSSIGHVYGQFLERVATARKTTPERIDEIGQGRVW 497 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 +GA+A+ GL+D GG + A +++ + Sbjct: 498 SGAQARVRGLVDRTGGLRDALAVAAARAKLAPGYRVQYMEEMPGRAERLM 547 Score = 60.0 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 35/252 (13%), Positives = 81/252 (32%), Gaps = 34/252 (13%) Query: 29 SHVEDNSPHVARIAIRGQIEDS-----------------------QELIERIERISRDDS 65 V + +G I + ++L+ ++ + D Sbjct: 38 GPPPLADKTVLVLNPQGPIREQFSGSLRDNALQKVRGSDLEQTRLRDLLTALDAGATDAR 97 Query: 66 ATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 T+ ++ L G + A+ + + + Y ++ ++ + Sbjct: 98 ITSALLVLDDFAGAGLPTLREVAAAVDRFRAGGKKVVAWGSSYDQRQYYLAAHADEVWLH 157 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FSEVNPKAVQMMQDVV 182 + G + Y K LD+LGV+ V++ K S +P+ Q +++ Sbjct: 158 PMGGIEISGYGGRRTYFKDALDQLGVTAHVVRAGRFKNAAETLAASGPSPETEQADRELY 217 Query: 183 DSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 D + + + +R +P L+ A + GLID + ++++ Sbjct: 218 DGLWADYAATIEHARRLPAGSLSRAIAELPERLAAAGGDAAKLAAREGLIDAMKTRDQMR 277 Query: 235 QSLYALGVDQSI 246 +L A G Sbjct: 278 AALIARGERDGE 289 >gi|222085058|ref|YP_002543588.1| protease protein [Agrobacterium radiobacter K84] gi|221722506|gb|ACM25662.1| protease protein [Agrobacterium radiobacter K84] Length = 286 Score = 110 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 60/288 (20%), Positives = 112/288 (38%), Gaps = 22/288 (7%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS----------QELIERIERISRDDSATA 68 + + + G I + + +E+ +A A Sbjct: 1 MAGFFKRMIPKRFRKERVVIPVVRLSGAIASGGGPLRQSLNLAGISQALEKAFEMKAAPA 60 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAET 126 + + ++SPGGS I+ I+ + K + V ++AAS GY+I+ A + I+A T Sbjct: 61 IALVVNSPGGSPVQSRMIYNRIRDLAQEKQKKVLVFVEDVAASGGYMIALAGDEIIADAT 120 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 S+VGSIGV+ L KLGV + + K PF K ++ ++ + + Sbjct: 121 SIVGSIGVVSGGFGFPELLKKLGVERRVYTAGENKVILDPFQPEKEKDIEYLKSLQLEIH 180 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 F+ +V E R + G WTG ++GLID +G + + + Sbjct: 181 KVFIDMVRERRAGKLTDDDTVFSGLFWTGGRGLELGLIDGLGDMRQELKKRFG-----EK 235 Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL---WAVW 291 K+ P++ + +S++ + D I + + A+W Sbjct: 236 TKLVLVGTPRSLFGRRAPGVSLAGM--DGIGAGLASGLAQAAEEKALW 281 >gi|182419438|ref|ZP_02950690.1| periplasmic serine protease [Clostridium butyricum 5521] gi|237666922|ref|ZP_04526907.1| signal peptide peptidase SppA, 36K type [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376769|gb|EDT74341.1| periplasmic serine protease [Clostridium butyricum 5521] gi|237658121|gb|EEP55676.1| signal peptide peptidase SppA, 36K type [Clostridium butyricum E4 str. BoNT E BL5262] Length = 331 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 65/274 (23%), Positives = 129/274 (47%), Gaps = 18/274 (6%) Query: 34 NSPHVARIAIRGQIE---------------DSQELIERIERISRDDSATALIVSLSSPGG 78 + V + + G I+ + ++ + I+ + + +S +I+ ++SPGG Sbjct: 54 SEEFVGVVKVEGTIQSSSGSDSIFSTPQGYNHKKTLSYIDSMIKSNSNKGIILYVNSPGG 113 Query: 79 SAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 Y + ++ +++ K + +PV T + A S GY IS AS+ I A GSIGV+ Sbjct: 114 GVYESDELYLKLKEYKEKTGRPVWTYMSSRACSGGYYISMASDKIYANRNCWTGSIGVIT 173 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 VK DKLG+ + S P KA S E+ + ++Q +VD +Y F +V+E Sbjct: 174 SLVNVKGLYDKLGIEEIDITSGPNKAMGSSGREMTDEQRAILQSLVDEAYDQFAGIVAEG 233 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA-LGVDQSIRKIKDWNPP 255 R++ + ++DGR+++ +A ++GLID V + + + + +G D ++ + Sbjct: 234 RHMDIETVKPIADGRVYSANQALQLGLIDNVDTYDNMQKDMLDYIGSDVTVYTPEVQENV 293 Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + F ++ + S + +++ GL Sbjct: 294 FSSLFSKVEGIKSKSDAQVISDYLEKAGNGGLMY 327 >gi|34764084|ref|ZP_00144963.1| Putative signal peptide peptidase sppA [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886138|gb|EAA23435.1| Putative signal peptide peptidase sppA [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 263 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 1/202 (0%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + E +E++ +D A+++ ++SPGGSA + I ++++ KPV + +AA Sbjct: 14 NVSETLEKLNIAKENDKIKAVVLRVNSPGGSALTSDIIAEKVKELAEEKPVYVSMSSVAA 73 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 S GY IS +N I ++ GSIGV+ P + GV+I+ + Sbjct: 74 SGGYYISANANKIFVDRNTITGSIGVVSILPDFSKLITDNGVNIEKISDGEYSDLY-SVD 132 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 K + + Y F+ +VS+ R I +K +++GRIWTG EA K+GL D +G Sbjct: 133 SFTEKKYNKIYNSNLKVYEDFLNVVSKGRKIDKEKLKTIAEGRIWTGDEAIKIGLADEIG 192 Query: 229 GQEEVWQSLYALGVDQSIRKIK 250 G E +L + Sbjct: 193 GLNETIYALAEDNDMDEYAIVI 214 >gi|323144007|ref|ZP_08078659.1| signal peptide peptidase SppA, 67K type [Succinatimonas hippei YIT 12066] gi|322416210|gb|EFY06892.1| signal peptide peptidase SppA, 67K type [Succinatimonas hippei YIT 12066] Length = 643 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 110/234 (47%), Gaps = 11/234 (4%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSAT 67 ++ S+ + +A I GQI ++ + + DD Sbjct: 340 MINYRKYLALKSTPEKLKDKRIAVIYGIGQISGFSNDVYAFTPDNILPLLNEVRNDDKIK 399 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAET 126 A+++ ++SPGG+ A E I R + ++K K VI ++ AAS GY ++ A++ I+A + Sbjct: 400 AVVMYINSPGGAVKASEEIRRELMRLKELGKKVIVSMNGTAASGGYWVASAADQIIADSS 459 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 +L GSIGV L+ +GV V + S + ++ + M+ V+ +Y Sbjct: 460 TLTGSIGVFSLALGAHDLLNHVGVYQDGVATHEFADA-SIANPLSENTKETMRLSVEHTY 518 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 F+ LV++SR + + ++G+++ G EA+ +GLID +G + + L Sbjct: 519 DTFINLVAKSRRLSPANYISYAEGQVFLGDEAQNLGLIDDLGSLNDALNTAAKL 572 Score = 60.4 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 36/266 (13%), Positives = 91/266 (34%), Gaps = 37/266 (13%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------------------E 52 + + + S + + ++G I +S Sbjct: 69 AVIIASGQEEITTVEQSAQILYLPLKGVISESPLASDDFSNLQRRINEQLTGSVTHELIA 128 Query: 53 LIERIERISRDDSATALIVSLSSP-GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 + + + + D++ +I+ L+ S + I A+ KV+N +T + + + Sbjct: 129 IEKALNFAAEDNNLKLIILDLNDLSPMSLAVAKRIGNAVDKVRNAGKEVTALAYSYSQSA 188 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SE 169 + I+ + I+ V G+ Y K L+ L V+ K+ K+ P+ ++ Sbjct: 189 FAIAAHCDKILLDTMGQVNLRGIGMSSLYYKDLLNTLKVTPYIFKAGHFKSAVEPYTRND 248 Query: 170 VNPKAVQMMQDVVDSSYHWFVRL-----VSESRNIPYDKTLVLSDGRIWTGAEA---KKV 221 ++P ++ + + +++ V + D + + ++ G A + Sbjct: 249 MSPDVKAEYANLAANLWDEYIKELNVRKVLSRTIVLPDADKYVKELELYKGDTALMQLEN 308 Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIR 247 L+D + +E+ SL Sbjct: 309 NLVDELISREDYLLSLCKDYGTDKSD 334 >gi|111021003|ref|YP_703975.1| signal peptide peptidase [Rhodococcus jostii RHA1] gi|110820533|gb|ABG95817.1| possible signal peptide peptidase [Rhodococcus jostii RHA1] Length = 288 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 61/272 (22%), Positives = 113/272 (41%), Gaps = 21/272 (7%) Query: 31 VEDNSPHVARIAIRGQIED----------SQELIERIERISRDDSATALIVSLSSPGGSA 80 + V + ++G I ++ + E + R A A+ + ++SPGGS Sbjct: 21 GGSGAGVVPVVRLQGMIASGGAGFGRVLSAESVEEPLRRAFTTHGAKAVALLINSPGGSP 80 Query: 81 YAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 E I I+++ PV+ ++ AS GY ++CA++ I A TS+VGS+GV+ Sbjct: 81 TQSEYIAARIRQLATEHELPVLAFCEDVVASGGYWLACAADEIYATATSVVGSVGVISAG 140 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 +D+LG+ + + KA PF + VQ ++ + + + F V R Sbjct: 141 FGFSELIDRLGIERRLHSAGEAKARLDPFFAEKSEDVQWLEQIQEGIHDEFRDWVVGRRG 200 Query: 199 IPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 L +G +W G A ++G++D +G EV + + + P+ Sbjct: 201 NKLKADGAELFNGDVWLGRRAVELGIVDGIGTLREVVEKRFPDATL-------EMTGPRR 253 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 F L L +S E ++ + W+ Sbjct: 254 SLFAKL-GLPAASWDEVAAAIVGAASARVAWS 284 >gi|221640571|ref|YP_002526833.1| peptidase S49 [Rhodobacter sphaeroides KD131] gi|221161352|gb|ACM02332.1| Peptidase S49 [Rhodobacter sphaeroides KD131] Length = 250 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 62/251 (24%), Positives = 109/251 (43%), Gaps = 14/251 (5%) Query: 41 IAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 I ++G I Q L IE+ R + + ++SPGGS I I+++ Sbjct: 2 IRLQGVIASGPRGGLSDQGLAAVIEKAFRRGKPAGVALVINSPGGSPVQSSLIAARIRRL 61 Query: 94 KNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + K V V ++AAS GY ++CA + I E+SLVGSIGV+F F+ + G+ Sbjct: 62 ASEKGVRVHAFVEDVAASGGYWLACAGDEIWVDESSLVGSIGVIFSSFGFHEFMARNGIE 121 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + + K+ PF P+ V+ ++ + + + F+ V +R D L + Sbjct: 122 RRVHTAGRSKSLADPFLPEKPEDVERLRALQEPIHRAFIEHVKRNRGARLDLNADLFNAD 181 Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 +WTG EA ++GL D V Q +Y ++ + + + +L+ +L Sbjct: 182 VWTGQEAVRLGLADGVAHLVPKLQEIYG-----DKVRLVPYGQRRPFLQRLGMSLAGQAL 236 Query: 272 LEDTIPLMKQT 282 E + Sbjct: 237 AEVENRALWAR 247 >gi|288917963|ref|ZP_06412322.1| signal peptide peptidase SppA, 36K type [Frankia sp. EUN1f] gi|288350618|gb|EFC84836.1| signal peptide peptidase SppA, 36K type [Frankia sp. EUN1f] Length = 692 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 105/251 (41%), Gaps = 2/251 (0%) Query: 39 ARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 A + G + + + +RD S A + + SPGGS A + + R I++ + Sbjct: 372 AALPFGGPVLAADAVTAAFRAAARDSSVAAAVFRVDSPGGSYVASDVVRREIERFRATGR 431 Query: 99 V-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +AAS GY ++ ++IVA +L GSIGV V+ LDK+G+ +V + Sbjct: 432 PVIVSMGAVAASGGYFVALGGDLIVANPGTLTGSIGVFGGKQVVRDLLDKVGIGFGAVAA 491 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 SP +++ +D Y FV V+++R + + + L+ GR+WTGA+ Sbjct: 492 GENALMMSPRQSFTEAERAKLEEFLDRVYADFVGKVAQARRMSHAEAHELARGRVWTGAD 551 Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 A + GL+D +GG +A P + S Sbjct: 552 AHRHGLVDELGGLAHAIDLAWARAGLPAEETPRVRLTPKPSVLDRLRTPKSSEEPGAAAA 611 Query: 277 PLMKQTKVQGL 287 + V G+ Sbjct: 612 RTVTSLGVPGI 622 Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 45/200 (22%), Positives = 89/200 (44%), Gaps = 7/200 (3%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 +E+++ + R +RDD A L+ +++ G + + A+ + + V + Sbjct: 46 REVVDGLRRAARDDRAKVLVAHIAAGGMPLARVQEVRDAVAEFRASGGVTFAYADTFGEF 105 Query: 111 G-----YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 G Y ++CA + I A VG GV + P+++ LD+LGVS++ + K + Sbjct: 106 GGGTVAYYLACAFDEIWLAPPGDVGLTGVAMETPFLREALDRLGVSVEIGQRHEYKNAVN 165 Query: 166 P--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 + P + + +VDS V VS R + D+ + D +G A + GL Sbjct: 166 TLVERDFTPAHREALGRIVDSCAEQVVAEVSARRGLSPDQVRRMIDDAPMSGRAALEAGL 225 Query: 224 IDVVGGQEEVWQSLYALGVD 243 +D +G ++E + + + Sbjct: 226 VDRIGYRDEAYDQVRTRARE 245 >gi|146278889|ref|YP_001169048.1| peptidase S49 [Rhodobacter sphaeroides ATCC 17025] gi|145557130|gb|ABP71743.1| peptidase S49 [Rhodobacter sphaeroides ATCC 17025] Length = 265 Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 62/258 (24%), Positives = 107/258 (41%), Gaps = 14/258 (5%) Query: 34 NSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 P V I ++G I Q L IE+ R + + ++SPGGS I Sbjct: 10 KDPVVPVIRLQGVIATGARGGLSDQGLASLIEKAFRRGKPAGVALVINSPGGSPVQSSLI 69 Query: 87 FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I+++ V V ++AAS GY ++CA + I E+S+VGSIGV+F F Sbjct: 70 AARIRRLAEEHEVRVHAFVEDVAASGGYWLACAGDDIWVDESSIVGSIGVIFASFGFHDF 129 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + + G+ + + K+ PF + ++ ++ + + + F+ V +R D++ Sbjct: 130 MTRNGIERRVHTAGRSKSLADPFLPEKSEDIERLKALQEPIHRAFIDHVKRNRGARLDES 189 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 L + IWTG EA ++GL D V Q +Y ++ + + Sbjct: 190 ADLFNADIWTGQEAVRLGLADGVAHLVPKMQEIYG-----EKVRLVPYGQRRPLLQRLGM 244 Query: 265 NLSISSLLEDTIPLMKQT 282 NL L E + Sbjct: 245 NLFGHVLSEIEDRSLWAR 262 >gi|189023636|ref|YP_001934404.1| Clp protease [Brucella abortus S19] gi|254688698|ref|ZP_05151952.1| Clp protease [Brucella abortus bv. 6 str. 870] gi|254696825|ref|ZP_05158653.1| Clp protease [Brucella abortus bv. 2 str. 86/8/59] gi|189029213|sp|Q2YMB3|NHAA_BRUA2 RecName: Full=Na(+)/H(+) antiporter nhaA; AltName: Full=Sodium/proton antiporter nhaA gi|189019208|gb|ACD71930.1| Clp protease [Brucella abortus S19] Length = 736 Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64 L ++ + + + G I +E+ D Sbjct: 443 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 502 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122 A A+ +S++SPGG+ I+R I+ + +++K V V ++AAS GY+I+ A + I+ Sbjct: 503 HAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 562 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +S+VGSIGV+ L K+GV + + K PF + ++ ++ + Sbjct: 563 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 622 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + F+ +V E R L G WTG A +GLID +G + Y Sbjct: 623 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 679 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291 K+K P + L + + S + + GL A+W Sbjct: 680 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 731 >gi|86139080|ref|ZP_01057651.1| peptidase, family S49 [Roseobacter sp. MED193] gi|85824311|gb|EAQ44515.1| peptidase, family S49 [Roseobacter sp. MED193] Length = 290 Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 61/264 (23%), Positives = 113/264 (42%), Gaps = 14/264 (5%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIV 71 + + SP V+ + + G I + L +E A+ + Sbjct: 20 AIYIGAMMLRLPFVKKSPLVSVVRLSGAIGMSSRGSLNDATLAPVLEAAFSKGKPDAVAL 79 Query: 72 SLSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLV 129 ++SPGGS I I+++ K PV+ V ++AAS GY ++ A++ I A +S+V Sbjct: 80 EINSPGGSPVQSSLIGARIRRLAKEKDLPVLAFVEDVAASGGYWLAAAADEIWADASSIV 139 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ + L++ GV + + K+ PF NP+ V ++ ++ + F Sbjct: 140 GSIGVISAGFGAQELLNRHGVERRVYTAGESKSMLDPFQAENPEDVARLKVLLGDIHDNF 199 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 + V++ R D + L G IW A ++GLID +G + + K+ Sbjct: 200 ITHVTDRRGDKLDSSEKLFTGEIWLAKRATELGLIDGIGHIKPTLIDRFG-----DKVKL 254 Query: 250 KDWNPPKNYWFCDLKNLSISSLLE 273 + ++ K + L+ +L Sbjct: 255 RRYSIKKPFLSRFGVALAQDALAG 278 >gi|34580537|ref|ZP_00142017.1| possible protease sohB [Rickettsia sibirica 246] gi|157828421|ref|YP_001494663.1| protease sohB [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933133|ref|YP_001649922.1| signal peptide peptidase [Rickettsia rickettsii str. Iowa] gi|229586670|ref|YP_002845171.1| Signal peptide peptidase SppA, 36K type [Rickettsia africae ESF-5] gi|238650916|ref|YP_002916772.1| signal peptide peptidase [Rickettsia peacockii str. Rustic] gi|28261922|gb|EAA25426.1| possible protease sohB [Rickettsia sibirica 246] gi|157800902|gb|ABV76155.1| possible protease sohB [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908220|gb|ABY72516.1| signal peptide peptidase [Rickettsia rickettsii str. Iowa] gi|228021720|gb|ACP53428.1| Signal peptide peptidase SppA, 36K type [Rickettsia africae ESF-5] gi|238625014|gb|ACR47720.1| signal peptide peptidase [Rickettsia peacockii str. Rustic] Length = 304 Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 113/265 (42%), Gaps = 18/265 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPG 77 ++S ++ +A + + G I + L IE+ + AL + ++SPG Sbjct: 30 FASVFGNSKEVIAVLRLSGVIGKVSTMQSGLTLESLNALIEKAFKIKKLKALCLIINSPG 89 Query: 78 GSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 GS E I + I+ + +N+ + + + +MAAS GY ++C+ + I A +S++GSIGV+ Sbjct: 90 GSPVQSELIAKRIRDLAEENKIKIYSFIEDMAASGGYWLACSGDRIYALPSSVIGSIGVV 149 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 ++KLG+ + K+ PF +N +++++D+ Y F+ V Sbjct: 150 SSGFGFHEAINKLGIERRVYTEGKNKSVLDPFKPINKDDLKIIKDLQKQVYEHFIEYVKT 209 Query: 196 SRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 R + + +G W G A GLID +G V + + + + Sbjct: 210 RRAGKLTQQDEILFNGEFWAGQTALDYGLIDGIGDMYSVMKEKFGDNIKF------QYLC 263 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLM 279 K W + L ++ + Sbjct: 264 AKQPWLKKKLGMGSKILTDNLANSL 288 >gi|254693181|ref|ZP_05155009.1| Clp protease [Brucella abortus bv. 3 str. Tulya] Length = 736 Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64 L ++ + + + G I +E+ D Sbjct: 443 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 502 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122 A A+ +S++SPGG+ I+R I+ + +++K V V ++AAS GY+I+ A + I+ Sbjct: 503 HAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 562 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +S+VGSIGV+ L K+GV + + K PF + ++ ++ + Sbjct: 563 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 622 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + F+ +V E R L G WTG A +GLID +G + Y Sbjct: 623 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 679 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291 K+K P + L + + S + + GL A+W Sbjct: 680 --DKVKLKLIQPQRGLLGRKLPGIGMDSSSVEPAQIAAHLG-DGLLCVAEEKAIW 731 >gi|67459011|ref|YP_246635.1| Signal peptide peptidase SppA [Rickettsia felis URRWXCal2] gi|67004544|gb|AAY61470.1| Signal peptide peptidase SppA [Rickettsia felis URRWXCal2] Length = 304 Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 60/265 (22%), Positives = 116/265 (43%), Gaps = 18/265 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPG 77 ++S D+ +A + + G I + L E IE+ + AL + ++SPG Sbjct: 30 FASVFGDSKEVIAVLRLSGVIGKVSTMQSGLTLESLNELIEKAFKIKKLKALCLIINSPG 89 Query: 78 GSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 GS E I + I+ + +N+ + + + +MAAS GY ++C+ + I A+ +S++GSIGV+ Sbjct: 90 GSPVQSELIAKRIRDLAKENKIKIYSFIEDMAASGGYWLACSGDWIYASYSSVIGSIGVV 149 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 ++KLG+ + KA PF +N + +++++++ Y FV V Sbjct: 150 SSGFGFHEAINKLGIERRVYTEGKNKAILDPFKPINKEDLKIIKNLQQQVYEHFVDYVKT 209 Query: 196 SRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 R + + +G W G A GLID +G + + + + + Sbjct: 210 RRAGKLTQQDEILFNGEFWAGQTALDYGLIDGIGDMYSIMKEKFGDNIKF------QYLC 263 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLM 279 K W + L ++ + Sbjct: 264 AKQPWLKKKLGMGSKILTDNFANSL 288 >gi|319407549|emb|CBI81199.1| protease [Bartonella sp. 1-1C] Length = 282 Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 60/274 (21%), Positives = 113/274 (41%), Gaps = 19/274 (6%) Query: 31 VEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSA 80 N+ + + ++G I +++ A A+ + ++SPGGS Sbjct: 12 FRSNTVQIPVVRLQGAIISSNSSISRTLSLARCASLLDKAFSYKKAPAVALIINSPGGSP 71 Query: 81 YAGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 IF+ I+ + N K +T V ++AAS GY+I+CA + I + +S++GSIGV+ Sbjct: 72 VQSRLIFQRIRDLANEKNKQVLTFVEDVAASGGYMIACAGDEIFSDPSSIIGSIGVVSAS 131 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 L K+GV + + K PF V ++ + + F+ LV E R Sbjct: 132 FGFPELLKKIGVERRVYTAGKNKVTLDPFQPEKKTDVDHLKSLQLEVHQTFIDLVKERRM 191 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + G W+G + ++GLID +G V + + + K++ +PPK+ Sbjct: 192 SKLSDDSNIFTGMFWSGKKGVELGLIDELGDIRSVIKKRFG-----NNAKLRLISPPKSL 246 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + + + + + A+W Sbjct: 247 LSSKVPLGISADTAYTAVDGVMMAAEER--ALWQ 278 >gi|292572009|gb|ADE29924.1| Signal peptide peptidase SppA, 36K type [Rickettsia prowazekii Rp22] Length = 304 Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 66/265 (24%), Positives = 116/265 (43%), Gaps = 18/265 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPG 77 ++S D+ VA + + G I + L E IE+ + AL + ++SPG Sbjct: 30 FASVFGDSKEVVAVLRLSGVIGKVSTMQSGLTLESLNELIEKTFKIKKLKALCLIINSPG 89 Query: 78 GSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 GS E I + I+ + +N+ V + + +MAAS GY ++C+ + I A +S++GSIGV+ Sbjct: 90 GSPVQSELIAKRIRDLAKENKIKVYSFIEDMAASGGYWLACSGDQIYALPSSVIGSIGVV 149 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 ++KLG+ + KA PF +N +++++D+ Y FV V Sbjct: 150 SSGFGFHEAINKLGIERRVYTEGKNKAVLDPFKPINKDDLKIIKDLQKQVYEHFVEYVKN 209 Query: 196 SRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 R + + +G W G A GLID +G V + + + + Sbjct: 210 RRAGKLTQQDEILFNGEFWAGQTALDYGLIDGIGDMYSVIKEKFGDNIKF------QYLC 263 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLM 279 K W + L+ED + + Sbjct: 264 AKQPWLKKKLGMRSKILIEDLVNTV 288 >gi|197121609|ref|YP_002133560.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter sp. K] gi|196171458|gb|ACG72431.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter sp. K] Length = 834 Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 113/266 (42%), Gaps = 24/266 (9%) Query: 38 VARIAIRGQIE---------------DSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 + + + G I ++ + I R + D + A+++ + S GG A Sbjct: 544 IQVVRVEGIIARGRSRADPLGADGVAGAETIAAEIHRAADDAAVRAIVLRIESGGGDGLA 603 Query: 83 GEAIFR-AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + I+R A++ + KPVI + ++AAS GYL++ ++ I+A ++L GSIGV P + Sbjct: 604 SDLIWREAVRARRKGKPVIASMGDLAASGGYLVAVGADAILAERSTLTGSIGVFAAKPDL 663 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L KL + ++ + S P +++ + + Y FV V+E R + Sbjct: 664 SGLLAKLSIHPEAYQRGENARLVSVLKPWTPAERAVLEKQIGAFYRQFVARVAEGRRLTT 723 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 + ++ GR+WTG +A + L+D +G + + ++ Sbjct: 724 AEVEAVAGGRVWTGQQALERKLVDRIGTLADAIRLARERIGLAPDDVVE--------VRR 775 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287 + +++ + + + + GL Sbjct: 776 EDGGGALARVAGRALTAAPEPPLAGL 801 Score = 75.4 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 L+ R+E D AL+V + E + + V+ RKPV+ + + Sbjct: 327 TLVTRLEAARDDPEVGALLVRIGGLSLGGGRVEELRALLAAVRARKPVLAYLEG-GGTRE 385 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FSE 169 Y ++ A+ I A + + G+ +++ L +LG++ VK+ K+ P Sbjct: 386 YWLATAATAIAAPPGAPLIVNGISTSQLFLRGGLARLGIAFDVVKAGAYKSAAEPLVRDA 445 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 +P+A + + V+D + FV V+E+R +P ++ L D ++T EAK+ GL+D V Sbjct: 446 PSPEAREATEAVLDDVFGRFVAQVAEARRLPPERVRALVDQGLFTAEEAKEAGLVDAVAW 505 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 +E+ + A+ + + P+ + I + + I +++ L A Sbjct: 506 PDELERWGRAVAGRRLFERGAYRPEPERLAQRWGRPAVIQVVRVEGIIARGRSRADPLGA 565 >gi|83854903|ref|ZP_00948433.1| peptidase, family S49 [Sulfitobacter sp. NAS-14.1] gi|83842746|gb|EAP81913.1| peptidase, family S49 [Sulfitobacter sp. NAS-14.1] Length = 265 Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 54/260 (20%), Positives = 109/260 (41%), Gaps = 19/260 (7%) Query: 33 DNSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + P V+ + + G I + I++ A+++ +SSPGGS Sbjct: 9 ASRPTVSVVRLSGVIGGRTRGGLNDSGIGPAIDKAFNRGKPAAVVLEISSPGGSPVQSSL 68 Query: 86 IFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I I+++ + K + I V ++AAS GY ++ A++ I A +S++GSIGV+ Sbjct: 69 IGARIRRLADEKNIPVIAFVEDVAASGGYWLAAAADEIYADPSSVLGSIGVISASFGADE 128 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 F+ + GV + + K+ PF P+ V ++ +++ + F+ V+ R Sbjct: 129 FIQRHGVERRVYTAGQSKSMLDPFRPEKPEDVARLKQLLEDIHGNFIDHVTSRRGSKLSS 188 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L G +W A ++GLID +G + + + K + K Sbjct: 189 DTDLFTGEVWLAKRATELGLIDGIGHLRPMIKQRFG-----DKVKFNRYGTKKGLLSRF- 242 Query: 264 KNLSISSLLEDTIPLMKQTK 283 + ++ D + +++ Sbjct: 243 ----GAQIIGDAVDSIEERA 258 >gi|88706603|ref|ZP_01104306.1| protease IV [Congregibacter litoralis KT71] gi|88699099|gb|EAQ96215.1| protease IV [Congregibacter litoralis KT71] Length = 598 Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 72/275 (26%), Positives = 121/275 (44%), Gaps = 12/275 (4%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGS 79 S + P VA + +G + L + + + A+++ +++ GGS Sbjct: 300 SRAASDLPKVAVVTAQGNMLPGDQPPGTIGSGSLSRLLRKTAERKGVEAIVLRVTTGGGS 359 Query: 80 AYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 +A E I I++++ PV+ + +AAS GY I+ A++ I A TSL GSIGV + Sbjct: 360 VFASEIIRAEIERIRKTGMPVVVSMGSVAASGGYYIATAADRIFATPTSLTGSIGVFAAF 419 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P V+ L K GV + ++ + P +NP +Q VD Y F+ LVSESR+ Sbjct: 420 PTVERLLAKGGVQTDGLGTTELAGALRPDRALNPALADTLQQSVDHIYRQFLGLVSESRS 479 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 I L+ GR+ + +A + GLID +G ++ + AL + P + Sbjct: 480 IDLVTLDALAQGRVLSARDALEAGLIDGLGSLDDAAKEAAALAGLDDDYAVISILPEFSS 539 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 L +S + + GL A+ P Sbjct: 540 SELLL--QQLSDRMGAGRLMTMPGLASGLSALLEP 572 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 44/310 (14%), Positives = 100/310 (32%), Gaps = 39/310 (12%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------------------- 51 ++ ++ + + S + G++ D + Sbjct: 15 LIFIVLLVVLWMSFSGSPEPLPQRAALVLDPTGRVVDERSQIEAASLLFEQPAASRETLL 74 Query: 52 -ELIERIERISRDDSATALIVSLSSPGGSAYAGE----AIFRAIQKVKNRKPVITEVHEM 106 +LI+ +E DD AL++ GG G+ + AI + + + V + Sbjct: 75 TDLIDSVELARSDDRIAALVLK---LGGLVSIGQSKTTELAEAIARFRETGKPVIAVGDY 131 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 Y ++ ++ ++ V G F Y LDKL V++ ++ K+ P Sbjct: 132 FTQDQYRLAVEADTLLMHPFGAVALEGFSFYTNYFADALDKLSVTMHVFRAGDYKSIAEP 191 Query: 167 --FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT--------GA 216 ++++P Q+ ++ +D + + V R + L + Sbjct: 192 LLRNDMSPGERQITREWLDDLWDAYSSAVESRRGLEPGAVNALLNDFPARLRAVDGDGAR 251 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 A + GL+D + + + L +L Y + + S L + + Sbjct: 252 LALEAGLVDELLDRSQQNSHLVSLVGATDEDGSFQGVSFSRYVTRMRPSRAASDLPKVAV 311 Query: 277 PLMKQTKVQG 286 + + G Sbjct: 312 VTAQGNMLPG 321 >gi|299141026|ref|ZP_07034164.1| signal peptide peptidase SppA, 67K type [Prevotella oris C735] gi|298577992|gb|EFI49860.1| signal peptide peptidase SppA, 67K type [Prevotella oris C735] Length = 588 Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 64/266 (24%), Positives = 120/266 (45%), Gaps = 17/266 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED---------------SQELIERIERISRDDSATALI 70 + H+A G I D ++ +E +++DD A++ Sbjct: 288 INADDTPVTGEHIAVYYAYGDIVDKASPQSIFQDDRQIVGNDMCRDLEDLAKDDDVKAVV 347 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + ++S GGSAYA E I+ I ++K KPV+ + AAS GY +S +N IVA T++ G Sbjct: 348 IRVNSGGGSAYASEQIWHQISELKKVKPVVVSMSGAAASGGYYLSSNANWIVADPTTITG 407 Query: 131 SIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 SIG+ + KL ++ VK++ + P+ + ++Q+ V+ Y F Sbjct: 408 SIGIFGLFLDRSELYTKKLSINYAEVKTNRNSVFGASGHPFTPEQLSLLQNNVNRGYMLF 467 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 + V+E R + ++ ++ GR+W G + K+ L+D +GG ++ + A + + Sbjct: 468 KKRVAEGRKMTMEQVENIAQGRVWLGQDVIKLKLVDQLGGLDD-AIAKAAKLAKMNDYET 526 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDT 275 + P + W L + L + Sbjct: 527 ASYPSPLSTWEQLLGSYVGGDDLLNG 552 Score = 95.8 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 98/284 (34%), Gaps = 31/284 (10%) Query: 1 MEFVLKKIKTRYVMLSLVTLTV----------VYFSWSSHVEDNSPHVARIAIRGQIEDS 50 M+ K + + L L + + + S SS + V + + G + + Sbjct: 1 MKDFFKNVFATMLGLFLFGIVMSFMGFMCLIGIIASSSSTTKIEDNSVLVLKLDGSMTEQ 60 Query: 51 QE-----------------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 +E ++ I++ +D + + G E I +A+ Sbjct: 61 EEENMMNSLQGISSLSFEGTMKAIKKAKDNDKVAGIYLETGQFGADLAQAEEIEKALLDF 120 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + I E ++ GY ++ +N I + ++ G+ + Y K L K+G+ Sbjct: 121 RKSGKWIIAYGENYSTLGYYLASTANKIYLNKDGMIEWSGIGGEKVYYKNLLAKVGIKFV 180 Query: 154 SVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K K+ E ++ + Q +D ++ + V+++R++ D +D Sbjct: 181 TTKVGKYKSAVEQLTADNISDADREQTQRYLDGWWNTILATVAKNRSLNKDSLNAYADRV 240 Query: 212 IWT--GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 I +K L+D + +++ + I Sbjct: 241 ITLEAPENMQKYKLVDGLIYNDQIADIVRKQLGIDKEDDINKLT 284 >gi|15892468|ref|NP_360182.1| protease sohB [Rickettsia conorii str. Malish 7] gi|15619624|gb|AAL03083.1| possible protease sohB [Rickettsia conorii str. Malish 7] Length = 304 Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 113/265 (42%), Gaps = 18/265 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPG 77 ++S ++ +A + + G I + L IE+ + AL + ++SPG Sbjct: 30 FASVFGNSKEVIAVLRLSGVIGKVSTMQSGLTLESLNALIEKAFKIKKLKALCLIINSPG 89 Query: 78 GSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 GS E I + I+ + +N+ + + + +MAAS GY ++C+ + I A +S++GSIGV+ Sbjct: 90 GSPVQSELIAKRIRDLAEENKIKIYSFIEDMAASGGYWLACSGDRIYALPSSVIGSIGVV 149 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 ++KLG+ + K+ PF +N +++++D+ Y F+ V Sbjct: 150 SSGFGFHEAINKLGIERRVYTEGKNKSVLDPFKPINKDDLKIIKDLQKQVYEHFIEYVKT 209 Query: 196 SRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 R + + +G W G A GLID +G V + + + + Sbjct: 210 RRAGKLTQQDEILFNGEFWAGQTALDYGLIDGIGDIYSVMKEKFGDNIKF------QYLC 263 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLM 279 K W + L ++ + Sbjct: 264 AKQPWLKKKLGMGSKILTDNLANSL 288 >gi|86157564|ref|YP_464349.1| signal peptide peptidase A [Anaeromyxobacter dehalogenans 2CP-C] gi|85774075|gb|ABC80912.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49 [Anaeromyxobacter dehalogenans 2CP-C] Length = 834 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 53/266 (19%), Positives = 112/266 (42%), Gaps = 24/266 (9%) Query: 38 VARIAIRGQIE---------------DSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 + + + G I ++ + I R + D + A+++ + S GG A Sbjct: 544 IQVVRVEGIIARGRSRPDPLGGDGVAGAESIAAEIHRAADDAAVRAIVLRIESGGGDGLA 603 Query: 83 GEAIFR-AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + I+R A++ + KPVI + ++AAS GYL++ ++ I+A ++L GSIGV P + Sbjct: 604 SDLIWREAVRARRKGKPVIASMGDLAASGGYLVAVGADAILAERSTLTGSIGVFAAKPDL 663 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L KL + ++ + S +++ + + Y FV V+E R + Sbjct: 664 SGLLAKLSIHPEAYQRGENARLASVLKPWTAAERAVLEKQISAFYRQFVARVAEGRRLTA 723 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 + ++ GR+WTG +A + L+D +G + + + ++ Sbjct: 724 AEVEAVAGGRVWTGQQALERRLVDRIGTLADAIRLARERAGIAADDVVE--------VRR 775 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287 +++ + + + + GL Sbjct: 776 ADGGGALARVAGRALAAAPEPPLAGL 801 Score = 70.0 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 47/212 (22%), Positives = 93/212 (43%), Gaps = 3/212 (1%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 L+ R+E D AL+V + E + + V+ RKPV+ + + Sbjct: 327 TLVTRLEAARDDPEVGALLVRIGGLPLGGGRVEELRALLAAVRARKPVLAYLEG-GGTRE 385 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FSE 169 Y ++ + I A + + G+ +++ L +LG++ VK+ K+ P Sbjct: 386 YWLATGATAIAAPPGAPLIVNGISTSQLFLRGGLARLGIAFDVVKAGAYKSAAEPLVRDA 445 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 +P+A + + V+D + FV V+E+R +P ++ L D ++ EAK+ GL+D+V Sbjct: 446 PSPEAREATEAVLDDVFGRFVAQVAEARRLPPERVRALVDQGLFGAEEAKEAGLLDLVAW 505 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 +E+ Q A+ + + P+ Sbjct: 506 PDELEQWGRAVAGRRLFERGAYRPEPERLAQR 537 >gi|154245323|ref|YP_001416281.1| peptidase S49 [Xanthobacter autotrophicus Py2] gi|154159408|gb|ABS66624.1| peptidase S49 [Xanthobacter autotrophicus Py2] Length = 295 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 67/267 (25%), Positives = 113/267 (42%), Gaps = 14/267 (5%) Query: 36 PHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 P V + + G I + +++ SA A+ + ++SPGGS Sbjct: 26 PVVPVVRLSGAIGMQTTPFARSLSLAGTAQALDKAFAMKSAPAVALLINSPGGSPVQSHL 85 Query: 86 IFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 IFR I+ + + K V V + AAS GY+I+CA++ I A S+VGSIGV+ Sbjct: 86 IFRRIRALAEEKEKHVFAFVEDAAASGGYMIACAADEIFADPCSIVGSIGVVTAGFGFDK 145 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI-PYD 202 ++KLGV + + K PF P+ V+ + ++ + FV LV R+ Sbjct: 146 AIEKLGVERRVYTAGERKVTLDPFRPTRPEDVERLDVLLKELHTVFVDLVRSRRSDALPA 205 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L G W G +A +GL+D +G + ++ Y V + + P+ Sbjct: 206 DDESLFSGEFWLGTQAAGLGLVDGLGDVRSILKARYGEEVRMPLVQSSSGLIPRRPGGFG 265 Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWA 289 L+ S + M + + LW+ Sbjct: 266 A-ALAGSLASQAADGAMAAVEERALWS 291 >gi|260545864|ref|ZP_05821605.1| clp protease [Brucella abortus NCTC 8038] gi|260754175|ref|ZP_05866523.1| Na+/H+ antiporter NhaA [Brucella abortus bv. 6 str. 870] gi|260761219|ref|ZP_05873562.1| Na+/H+ antiporter NhaA [Brucella abortus bv. 2 str. 86/8/59] gi|260097271|gb|EEW81146.1| clp protease [Brucella abortus NCTC 8038] gi|260671651|gb|EEX58472.1| Na+/H+ antiporter NhaA [Brucella abortus bv. 2 str. 86/8/59] gi|260674283|gb|EEX61104.1| Na+/H+ antiporter NhaA [Brucella abortus bv. 6 str. 870] Length = 723 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64 L ++ + + + G I +E+ D Sbjct: 430 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 489 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122 A A+ +S++SPGG+ I+R I+ + +++K V V ++AAS GY+I+ A + I+ Sbjct: 490 HAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 549 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +S+VGSIGV+ L K+GV + + K PF + ++ ++ + Sbjct: 550 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 609 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + F+ +V E R L G WTG A +GLID +G + Y Sbjct: 610 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 666 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291 K+K P + L + + S + + GL A+W Sbjct: 667 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 718 >gi|330945618|gb|EGH47112.1| peptidase S49, SppA [Pseudomonas syringae pv. pisi str. 1704B] Length = 262 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 8/207 (3%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61 K V + V + S H A I ++G I D ++ ++ +++ Sbjct: 49 FFKLLTFAFLFVAVIVPMLDFEGGTSRRSSHTALIDVQGVIADKEAASAENIVTALQKAF 108 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118 D+ +I+ ++SPGGS ++ I++++ KP I + AS Y I+ A+ Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRATKPDIKVYAVITDLGASGAYYIASAA 168 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I A + SLVGSIGV +DKLGV ++ S KA PF Q Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFW 228 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL 205 Q V+D+++ F+ V + R Sbjct: 229 QGVLDTTHRQFIASVKQGRGDRLKDKE 255 >gi|261213422|ref|ZP_05927703.1| Na+/H+ antiporter NhaA [Brucella abortus bv. 3 str. Tulya] gi|260915029|gb|EEX81890.1| Na+/H+ antiporter NhaA [Brucella abortus bv. 3 str. Tulya] Length = 723 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64 L ++ + + + G I +E+ D Sbjct: 430 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 489 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122 A A+ +S++SPGG+ I+R I+ + +++K V V ++AAS GY+I+ A + I+ Sbjct: 490 HAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 549 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +S+VGSIGV+ L K+GV + + K PF + ++ ++ + Sbjct: 550 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 609 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + F+ +V E R L G WTG A +GLID +G + Y Sbjct: 610 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 666 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291 K+K P + L + + S + + GL A+W Sbjct: 667 --DKVKLKLIQPQRGLLGRKLPGIGMDSSSVEPAQIAAHLG-DGLLCVAEEKAIW 718 >gi|313116931|ref|YP_004038055.1| ClpP class periplasmic serine protease [Halogeometricum borinquense DSM 11551] gi|312294883|gb|ADQ68919.1| ClpP class periplasmic serine protease [Halogeometricum borinquense DSM 11551] Length = 304 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 59/265 (22%), Positives = 110/265 (41%), Gaps = 21/265 (7%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWS---SHVEDNSPHVARIAIRGQIEDSQ--ELIERIE 58 +++ ++ L V VA + + G I E+I+ + Sbjct: 5 SFSNFGRVLLVVGVIGLLVGAAVAPNVWERATGPDGTVAVVEMHGTITGDSATEVIDNLR 64 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 ++DS A+++ ++SPGG+A A E ++ A+++ + PV+ V MAAS GY ++ + Sbjct: 65 EARQNDSIRAVVLDINSPGGAASASEQLYLAVKRTQQEMPVVVSVTGMAASGGYYMTAPA 124 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + + S VGS+GV P + + + + P K S +EV Sbjct: 125 DEVYVTPASTVGSVGVRAVVPGSQAPSGE-------ILTGPDKGSTSTNAEV-------- 169 Query: 179 QDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 + V++ FV V E R+ LS ++++GA K+GL D +GG + Q Sbjct: 170 RRRVEALRRAFVGSVMEERSESLKLTEEELSYAKVYSGARGVKLGLADSIGGIDTAIQGA 229 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCD 262 ++ +P +N Sbjct: 230 ADRAGLSDYAIVRMESPKQNPLSQL 254 >gi|316932585|ref|YP_004107567.1| peptidase S49 [Rhodopseudomonas palustris DX-1] gi|315600299|gb|ADU42834.1| peptidase S49 [Rhodopseudomonas palustris DX-1] Length = 300 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 19/277 (6%) Query: 29 SHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPGGS 79 + P V + + G I + + ++R +A A+ ++++SPGGS Sbjct: 24 ERFRRDIPVVPVVRLSGTIGAVTPLRPGLTLASVAKLLDRAFSTRNAKAVALAINSPGGS 83 Query: 80 AYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 I+ I+ + K PV V ++AAS GY+I+CA++ I +S++GSIGV+ Sbjct: 84 PVQSRLIYLRIRALAAEKKLPVYAFVEDVAASGGYMIACAADEIYCDPSSILGSIGVVGG 143 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + + K+GV + + KA+ PF +P+ V ++ + + F+ LV ESR Sbjct: 144 GFGFQELIRKIGVERRLYTAGERKAQLDPFLPEDPQEVARLKVLQQEIHALFIALVKESR 203 Query: 198 NIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 + L G W GA + +GL D +G V + + V + +PP Sbjct: 204 GARLKGEESQLFTGEYWAGATSVSLGLADSIGDLRAVLREKFGDKVRTPL-----ISPPT 258 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGL--WAVW 291 + + D + + ++ + L A+W Sbjct: 259 GLLANLTRKSGGAEAALDGVAALPESMISALETRAIW 295 >gi|48477283|ref|YP_022989.1| putative signal peptide peptidase SppA [Picrophilus torridus DSM 9790] gi|48429931|gb|AAT42796.1| putative signal peptide peptidase SppA [Picrophilus torridus DSM 9790] Length = 247 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 109/238 (45%), Gaps = 3/238 (1%) Query: 37 HVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 ++A + G I + + I LI+ ++S GG A A E ++ + V Sbjct: 2 YIATLNFSGVINGGSISRYLPVFDYIKSKKKIAGLILIINSGGGDANATEILYNKLLDVS 61 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 KPV + + AS Y ++CA+ I A TS+VGSIGV+ P V FL+ LG+ ++ Sbjct: 62 KSKPVYALIEGIGASGAYWLACAARKIYAMSTSIVGSIGVISISPDVSDFLENLGIKMRI 121 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 K K SPF +N ++ +++++ + F V + RN+ D+ + G +++ Sbjct: 122 NKIGKYKDINSPFRHMNEDENEIFKELLNDVFLRFREEVKKRRNLTDDEINDTATGLVFS 181 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 + + LID +G + V ++ KIK+ P K + +SL+ Sbjct: 182 ARQGLERKLIDGIGTFDTVLNAIKNDNNI-KTAKIKNLTPRKPFVQRITGMAFDASLI 238 >gi|254486961|ref|ZP_05100166.1| peptidase S49 [Roseobacter sp. GAI101] gi|214043830|gb|EEB84468.1| peptidase S49 [Roseobacter sp. GAI101] Length = 265 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 19/257 (7%) Query: 36 PHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 P VA I + G I + I++ A+ + +SSPGGS I Sbjct: 12 PTVAVIRLSGVIGGRARGGLNDGGIGPAIDKAFSRGKPVAVALEISSPGGSPVQSSLIGA 71 Query: 89 AIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 I+++ + K PVI V ++AAS GY ++ A++ + A +S+VGSIGV+ + Sbjct: 72 RIRRLADEKKIPVIAFVEDVAASGGYWLAAAADEVYADPSSVVGSIGVISSSFGASELIS 131 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 + G+ + + K+ PF P+ V+ ++ +++ + F+ V R + Sbjct: 132 RHGIERRVYTAGQSKSMLDPFRPEKPEDVERLKHILNDIHTNFIDHVKARRGDKLAPDVD 191 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 L G IW A ++GLID +G + + K + K Sbjct: 192 LFTGEIWLAKRAAELGLIDGIGHLRPFLKERFG-----DKVKFARYGTKKGLLSRF---- 242 Query: 267 SISSLLEDTIPLMKQTK 283 + ++ D + +++ Sbjct: 243 -GAQIIGDAVDSIEERA 258 >gi|297247797|ref|ZP_06931515.1| NhaA family Na+:H+ antiporter [Brucella abortus bv. 5 str. B3196] gi|297174966|gb|EFH34313.1| NhaA family Na+:H+ antiporter [Brucella abortus bv. 5 str. B3196] Length = 763 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 114/295 (38%), Gaps = 24/295 (8%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64 L ++ + + + G I +E+ D Sbjct: 470 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 529 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122 A A+ +S++SPGG+ I+R I+ + +++K V V ++AAS GY+I+ A + I+ Sbjct: 530 HAPAVAISINSPGGAPVQLRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 589 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +S+VGSIGV+ L K+GV + K PF + ++ ++ + Sbjct: 590 ADPSSIVGSIGVVSASFGFPELLKKIGVERHVYTAGSNKVTLDPFQPEKAEDIERLKALQ 649 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + F+ +V E R L G WTG A +GLID +G + Y Sbjct: 650 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 706 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291 K+K P + L + + S + + GL A+W Sbjct: 707 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 758 >gi|15604263|ref|NP_220779.1| protease SohB [Rickettsia prowazekii str. Madrid E] gi|3860955|emb|CAA14855.1| POSSIBLE PROTEASE SOHB (sohB) [Rickettsia prowazekii] Length = 308 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 66/265 (24%), Positives = 116/265 (43%), Gaps = 18/265 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPG 77 ++S D+ VA + + G I + L E IE+ + AL + ++SPG Sbjct: 34 FASVFGDSKEVVAVLRLSGVIGKVSTMQSGLTLESLNELIEKTFKIKKLKALCLIINSPG 93 Query: 78 GSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 GS E I + I+ + +N+ V + + +MAAS GY ++C+ + I A +S++GSIGV+ Sbjct: 94 GSPVQSELIAKRIRDLAKENKIKVYSFIEDMAASGGYWLACSGDQIYALPSSVIGSIGVV 153 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 ++KLG+ + KA PF +N +++++D+ Y FV V Sbjct: 154 SSGFGFHEAINKLGIERRVYTEGKNKAVLDPFKPINKDDLKIIKDLQKQVYEHFVEYVKN 213 Query: 196 SRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 R + + +G W G A GLID +G V + + + + Sbjct: 214 RRAGKLTQQDEILFNGEFWAGQTALDYGLIDGIGDMYSVIKEKFGDNIKF------QYLC 267 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLM 279 K W + L+ED + + Sbjct: 268 AKQPWLKKKLGMRSKILIEDLVNTV 292 >gi|41615105|ref|NP_963603.1| hypothetical protein NEQ315 [Nanoarchaeum equitans Kin4-M] gi|40068829|gb|AAR39164.1| NEQ315 [Nanoarchaeum equitans Kin4-M] Length = 256 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 13/246 (5%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIE 58 ++ ++K+ ++ ++ + +Y +VA I I I +++I+ ++ Sbjct: 4 IKDIIKRNSWILFLVGIILFSHIYSIL------TKGNVAVIYIDKPITSDFAEKVIDFLK 57 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 A+++ + SPGG+ I + + ++ K I+ + + SA Y I+ + Sbjct: 58 EAKD---YKAIVLYIDSPGGAPEPTYRIIKYLDRINKTK--ISYIAQYGTSASYWIATHT 112 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 N I A E S VGS+GVL + L KLGV S K +P ++ Q Sbjct: 113 NKIFANELSFVGSVGVLIGKIDLSGLLSKLGVKYYSFSKGKYKEFSNPLLPLDNYTKQYY 172 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ D Y++F+ V E R+I + + + I+ G EAKK GLID +G ++V L Sbjct: 173 NELADKLYNFFLTDVLEHRDIKKECLSKVKESTIFLGIEAKKCGLIDYIGTMDDVKAYLE 232 Query: 239 ALGVDQ 244 + Sbjct: 233 KTLKIK 238 >gi|219852684|ref|YP_002467116.1| signal peptide peptidase SppA, 36K type [Methanosphaerula palustris E1-9c] gi|219546943|gb|ACL17393.1| signal peptide peptidase SppA, 36K type [Methanosphaerula palustris E1-9c] Length = 265 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 13/215 (6%) Query: 37 HVARIAIRGQI----------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 HV + G + S+ + + + D A+++ ++SPGG+ A E I Sbjct: 49 HVTVVRAEGTLVTGLVDSSDSTGSEVIGNALRAAADDPMTDAIVLRVNSPGGTPSAAEEI 108 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 I+ K +KPV+ + ++A SA YLIS ++ I A + +IG ++ + ++ Sbjct: 109 IGDIEYAKTKKPVVVSMGDIATSAAYLISVHADRIYANPDTFTANIGTIWTFSNDSEWMK 168 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 K G ++ VKS MK S + + Q +V++S+ F+ V R + Sbjct: 169 KKGYQVEVVKSGEMKDMGSSSRSLTTEERDYAQQLVNASFESFISDVLSHRPVNRTAIE- 227 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 DGR+ G EA +GL+D +G + + L Sbjct: 228 --DGRVIRGQEALDLGLVDKLGNLNDAEDAATDLA 260 >gi|146339073|ref|YP_001204121.1| putative serine protease SohB [Bradyrhizobium sp. ORS278] gi|146191879|emb|CAL75884.1| putative serine protease SohB [Bradyrhizobium sp. ORS278] Length = 288 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 65/268 (24%), Positives = 113/268 (42%), Gaps = 15/268 (5%) Query: 34 NSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGE 84 +P V + + G I L + +ER +A A+ + ++SPGGS Sbjct: 11 GAPVVPVVRLSGVIGAVTPLRPGLTLAGVAKMLERAFSMRNAKAVALVINSPGGSPVQSR 70 Query: 85 AIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I+ I+++ K PV+ V ++AAS GY+I+CA + I +S+VGSIGV+ ++ Sbjct: 71 QIYLRIRQLAAEKKLPVLVFVEDVAASGGYMIACAGDEIFCDPSSIVGSIGVVGGSFGLQ 130 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 + ++G+ + + KA PF NP V ++ + + F+ LV ESR Sbjct: 131 DLIKRIGIERRLYTAGEHKAMLDPFLPENPDDVARLKKIQREIHALFISLVKESRTNRLK 190 Query: 203 KTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 L G W G A +GL D +G V ++ + D+ + Sbjct: 191 GADDLLFTGEYWAGDTAVTLGLADAIGDLRAVLRARF---GDKVAMPVVAPAGGLLSGLL 247 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLWA 289 K+ SL + + + L + Sbjct: 248 GRKSAGAGSLTAQGLGIGWSGLAEELIS 275 >gi|150395686|ref|YP_001326153.1| peptidase S49 [Sinorhizobium medicae WSM419] gi|150027201|gb|ABR59318.1| peptidase S49 [Sinorhizobium medicae WSM419] Length = 288 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 59/266 (22%), Positives = 111/266 (41%), Gaps = 13/266 (4%) Query: 37 HVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + I + G I + + +E+ A A+ +S++SPGGS I Sbjct: 19 TIPAIRLHGAIMAGGSPLRPVLNLATVAPLLEKAFSVKDAPAVAISINSPGGSPVQSRLI 78 Query: 87 FRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 ++ I+ + K + V ++AAS GY+I+ A + I+A TS+VGSIGV+ Sbjct: 79 YQRIRDLAQEKRKRVLIFVEDVAASGGYMIALAGDEIIADPTSIVGSIGVVSGGFGFPDL 138 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K+GV + + K PF + ++ ++ + + F+++V R Sbjct: 139 LKKIGVERRVYTAGENKVLLDPFQPEKERDIEFLKGLQLEIHDIFIQMVKSRRGSLLADH 198 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQE-EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L G WTG +++GL+D +G EV + + I+ + + Sbjct: 199 PDLFSGLFWTGQRGQELGLVDSLGDMRSEVRKRYGEKARLELIQPARSLFGRRQPGAAVA 258 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289 ++ + L+ + + LWA Sbjct: 259 GAIAAPLVASAAAGLVDTLEERALWA 284 >gi|78485025|ref|YP_390950.1| peptidase S49 [Thiomicrospira crunogena XCL-2] gi|78363311|gb|ABB41276.1| protein C. Serine peptidase. MEROPS family S49 [Thiomicrospira crunogena XCL-2] Length = 463 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 100/224 (44%), Gaps = 14/224 (6%) Query: 36 PHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSPGGSAYA 82 ++ I I G + + Q++ E + + DD+ +++ SPGGSA Sbjct: 70 ENIGVIDISGPMVNRPIRGFCSNGPAAYQDIKEDFDELMADDNIKTIVLRCDSPGGSASG 129 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + I + +K +I V +MA SA Y I+ A + I + TS +GSIGV+ + Sbjct: 130 VMDLSDHIFNSRGQKKIIAIVDDMAYSAMYAIASACDEIYVSRTSGIGSIGVVTYHIDQS 189 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 F K+GV ++ + + K +P ++ +A MQ +D Y FV V+ +RN+ Sbjct: 190 EFDKKIGVKVEFIYAGDKKVAGNPHEPLSDQARTDMQTEIDRLYDIFVATVARNRNMDEQ 249 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 K G + G VGL D +G EV +L + + Sbjct: 250 KVRDTQAGCFY-GDTGIAVGLADKLGTFSEVIGNLVSDSGNVDD 292 >gi|212223529|ref|YP_002306765.1| Hypothetical endopeptidase IV [Thermococcus onnurineus NA1] gi|212008486|gb|ACJ15868.1| Hypothetical endopeptidase IV [Thermococcus onnurineus NA1] Length = 335 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 112/239 (46%), Gaps = 4/239 (1%) Query: 32 EDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 + + +A + I G I++ +I + I+ +DS +++ + SPGG I+ Sbjct: 85 PEGNTTIAIVPIFGLIDEYTALSIIPVLRDIAGNDSIGGVVLWIESPGGYVGPVREIYAT 144 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 ++K+ KPV+ +AAS GY I+ + I+A + VGSIGV++ + ++ + G Sbjct: 145 VKKLNLIKPVVAYTGGIAASGGYYIAVGAEEIIADPLAEVGSIGVIYVHYNLQQNYEMNG 204 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + ++ K+ P K + + + + M+ + VD+ + F++ VS R + ++T + Sbjct: 205 IKVEVFKTGPYKDMGAEWRGLTEEEKAMITESVDTYFQAFLQAVSSGRGMSLNETKEYAT 264 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 GR W L+D G + + L + + +I ++ + F + ++ Sbjct: 265 GRTWFAMN-VTGSLVDETGDLDYAVKVLGEMLNVTN-PRIVIYSGRSSSNFAIFGSTAL 321 >gi|292655044|ref|YP_003534941.1| proteinase IV-like [Haloferax volcanii DS2] gi|291370747|gb|ADE02974.1| proteinase IV-like, transmembrane [Haloferax volcanii DS2] Length = 333 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 60/292 (20%), Positives = 118/292 (40%), Gaps = 22/292 (7%) Query: 14 MLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQIE---------------DSQELIE 55 +L + V + + VA +A+ G I + +++E Sbjct: 42 LLLFIGTVVAALRVGGRLAASAFPDYDVAEVAVEGPISRDGGGGPVPGRGGGTPADDIVE 101 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 +++ + DDS AL+V L++PGG + I RA+ P + + AS GY I+ Sbjct: 102 QVDAAADDDSVDALLVKLNTPGGEVLPSDDIRRAVADF--DGPTVAYATDTCASGGYWIA 159 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 + + + + S+VGSIGV+ DK+G+S + + K E Sbjct: 160 SGCDELWSHDVSVVGSIGVIGSSVNASELADKVGLSYERFAAGKYKDAGMALKEPTEDER 219 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 + +Q ++D Y FV V+E R++ ++ R++ G EA ++GL+D +G +++V Sbjct: 220 EYLQGLIDDYYDDFVERVAEGRDMDPQVVRD-TEARVYLGEEAHELGLVDSLGSRDDVED 278 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 L + ++++ P + ++ G Sbjct: 279 RLAERLG-RDEVSVREFTPEVGLTDRLRGGVEGAAYAFGAGLASSVDPDDGF 329 >gi|17987818|ref|NP_540452.1| Na(+)/H(+) antiporter 1 / protease IV [Brucella melitensis bv. 1 str. 16M] gi|17983545|gb|AAL52716.1| na(+)/h(+) antiporter 1 / protease iv [Brucella melitensis bv. 1 str. 16M] Length = 763 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64 L ++ + + + G I +E+ D Sbjct: 470 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 529 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122 A A+ +S++SPGG+ I+R I+ + +++K V V ++AAS GY+I+ A + I+ Sbjct: 530 HAPAVAISINSPGGAPVQSRLIYRRIRDLAAEHQKKVFVFVEDVAASGGYMIALAGDEII 589 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +S+VGSIGV+ L K+GV + + K PF + ++ ++ + Sbjct: 590 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 649 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + F+ +V E R L G WTG A +GLID +G + Y Sbjct: 650 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMLSFLRKTYG--- 706 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291 K+K P + L + + S + + GL A+W Sbjct: 707 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 758 >gi|84685232|ref|ZP_01013131.1| peptidase, family S49 [Maritimibacter alkaliphilus HTCC2654] gi|84666964|gb|EAQ13435.1| peptidase, family S49 [Rhodobacterales bacterium HTCC2654] Length = 264 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 67/260 (25%), Positives = 110/260 (42%), Gaps = 20/260 (7%) Query: 33 DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 P VA I + G I + + IER R A+ +S++SPGGS Sbjct: 9 TPDPTVAVIRLHGSISTGTRGQLNDVAMAGPIERAFRRKP-KAVALSINSPGGSPVQSSL 67 Query: 86 IFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I I+++ + K PV V + AAS GY ++CA++ I A +S++GSIGV+ Sbjct: 68 IAARIRRLADEKEVPVYAFVEDAAASGGYWLACAADEIYADRSSILGSIGVIMASFGAHE 127 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 F+ K G+ + S K++ PF +PK V+ ++ V + F+ V +R Sbjct: 128 FIAKHGIERRVYTSGESKSQLDPFKPEDPKDVERIKAVGSEIHEAFIEHVKAARKDKLAD 187 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L G W G +A +GL D +G + + K P K+ + Sbjct: 188 DPSLFTGEFWVGQKAVDLGLADGIGHLVPFMKEKFG-----KDVKFAVLGPKKSLFKRF- 241 Query: 264 KNLSISSLLEDTIPLMKQTK 283 + + ED I ++ Sbjct: 242 ----GAQIAEDAIATVEDRA 257 >gi|298293861|ref|YP_003695800.1| peptidase S49 [Starkeya novella DSM 506] gi|296930372|gb|ADH91181.1| peptidase S49 [Starkeya novella DSM 506] Length = 298 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 60/274 (21%), Positives = 112/274 (40%), Gaps = 14/274 (5%) Query: 30 HVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSA 80 ++P V + + G I + + +ER A A+ + ++SPGG+ Sbjct: 21 KFRGDTPVVPVVRLSGAIGMATPFRPGVTFANTAKALERAFAVKGAKAVALIINSPGGAP 80 Query: 81 YAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 +++ I+ + K PVI V ++AAS GY+++CA++ IVA S+VGSIGV+ Sbjct: 81 AQSHLVYKRIRALAEEKELPVIAFVEDVAASGGYMLACAADEIVADVFSIVGSIGVVSAG 140 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 L+KLG+ + + K PF + ++ ++ + + FV LV + R Sbjct: 141 FGFPRALEKLGIDRRVYTAGERKVMLDPFQPEKEEDIERLKALQQEIHAAFVDLVKQRRG 200 Query: 199 IPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK--DWNPP 255 L G W +A+ +GL+D +G ++ Y V + + + + Sbjct: 201 DVLSAEDSTLFSGEFWAAPQAQGLGLVDSIGDMRSFLRARYGDKVRTPLIESRGGLFGRR 260 Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 L+ + + WA Sbjct: 261 SPGVMKLGDGFGGEVGAGAAEALISAAEERASWA 294 >gi|261879358|ref|ZP_06005785.1| signal peptide peptidase SppA [Prevotella bergensis DSM 17361] gi|270333923|gb|EFA44709.1| signal peptide peptidase SppA [Prevotella bergensis DSM 17361] Length = 589 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 100/284 (35%), Gaps = 31/284 (10%) Query: 1 MEFVLKKIKTRYVMLSLVTLTV----------VYFSWSSHVEDNSPHVARIAIRGQIEDS 50 M+ LK + V L + + + + S + + V I + G +++ Sbjct: 1 MKDFLKYVGATIVGLIIFGVALSVLGVMSIAGMIASSEATQKIKENSVLVIDLNGVMQEQ 60 Query: 51 -----------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 +E++ I++ +++ + ++ + E I A++ Sbjct: 61 ADESISTQLSGNTNLGLREILLAIKKAKNNENIKGIYLNAGALQADMAQLEEIRNALEGF 120 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + I E + Y ++ A+N I + G+ Q ++K K+G+ + Sbjct: 121 RKTGKWIVAYGETYSQPCYYLASAANKIYMNPQGAIDWTGIGGQVVFLKDTYAKIGIKMI 180 Query: 154 SVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 K K+ ++E ++ + Q + + + + VS+SR I D +D Sbjct: 181 PFKCGKYKSATEIYTEDHMSEPSRQQTERYIGGWWQTICQAVSKSRGISTDTLNAYADRV 240 Query: 212 I--WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 I K ++D + ++V ++ L I + Sbjct: 241 ITLEDPKNMVKYKMVDGLLYNDQVKNTVKKLLKLDEDDAINQIS 284 Score = 95.1 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 61/279 (21%), Positives = 121/279 (43%), Gaps = 19/279 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDSQ---------------ELIERIERISRDDSATALIVSLS 74 + + +A G I + ++ + + ++ +D A+++ ++ Sbjct: 292 QEDTDGDAIAVYYAYGNIVNEDVPQNSFLTPNLIVAKDVCKDLAELADNDDVKAVVLRVN 351 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 S GGSAYA E I+R ++ +K +KPV+ + AAS GY IS +N I A T++ GSIG+ Sbjct: 352 SGGGSAYASEQIWRQVELLKAKKPVVVSMGGAAASGGYYISAGANYIYAEPTTITGSIGI 411 Query: 135 LFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + LGV VK++ S + + +Q +D Y F V Sbjct: 412 FGIARDRSDLMTRMLGVKYDEVKTNRNSTMGSEVKPMTAEQFGYIQSSIDRGYMLFKNRV 471 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 ++ R + DK + G ++ G++A K+GL+D +GG ++ L ++ Sbjct: 472 AKGRRMSMDKVEAYAQGHVYLGSDALKLGLVDGLGGLDKAVAKAAQLAKV-ETYYTTNYP 530 Query: 254 PPKNYWFCDLKNLSIS--SLLEDTIPLMKQTKVQGLWAV 290 P + + +K+ +L++ + + + + Sbjct: 531 APASLFDQIMKSTEGREDGILDEKLRIALGNFYEPFMLI 569 >gi|312194538|ref|YP_004014599.1| peptidase S49 [Frankia sp. EuI1c] gi|311225874|gb|ADP78729.1| peptidase S49 [Frankia sp. EuI1c] Length = 827 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 106/246 (43%), Gaps = 1/246 (0%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-I 100 + G + + + ++D A + + SPGGS A + + R +++ + I Sbjct: 505 PVGGSVLAADAVCAAFRAAAKDPDIAAAVFRVDSPGGSYVASDLVRREVERFRATGRPVI 564 Query: 101 TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160 + +AAS GY ++ A++ IVA ++L GSIGV + LDKLGV+I V Sbjct: 565 VSMGAVAASGGYFVALAADTIVANPSTLTGSIGVYGGKQVISGLLDKLGVAIGEVAQGEH 624 Query: 161 KAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKK 220 S +P + + +D Y FV V+ SR +P ++ L+ GR+WTGA+A + Sbjct: 625 ALMMSARRPFSPGERAKLDEFLDRVYADFVGKVATSRAMPLERADELARGRVWTGADAHR 684 Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 GL+D +GG E + + R + P ++ S Sbjct: 685 HGLVDELGGLERSLRLAWTAAGLPGTRPSRIRLLPHRSLVDHVRPARSSEDTAAAFGDGS 744 Query: 281 QTKVQG 286 + G Sbjct: 745 GASLVG 750 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 80/190 (42%), Gaps = 7/190 (3%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 +E+++ + R + D L+ ++S G + I A+ + + + Sbjct: 54 REIVDGLRRAALDPRTRVLVAHVASCGMPIARVQEIRDAVGEFRAAGKFAIAYADTFGEF 113 Query: 111 -----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 Y ++CA + I A +G GV P+++ LD+LGV+ + K + Sbjct: 114 GGGTVPYYLACAFDQIWLAPPGDLGLTGVASHTPFLRDALDRLGVAAELGARHEYKNAVN 173 Query: 166 PFSE--VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 F E + ++ VV+SS + + R +P D+ L D + A + GL Sbjct: 174 TFVERGFTAEHLEATTRVVESSADEIIAGIVAGRRLPADRVRRLVDAGPLSAQVALRTGL 233 Query: 224 IDVVGGQEEV 233 +D +G ++EV Sbjct: 234 VDRLGYRDEV 243 >gi|218659745|ref|ZP_03515675.1| signal peptide peptidase SppA, 36K type [Rhizobium etli IE4771] Length = 254 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 91/226 (40%), Positives = 144/226 (63%), Gaps = 3/226 (1%) Query: 5 LKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 K R V ++LV + F PH+A + I G I D EL+ER++++ Sbjct: 25 RKLGFWRIVAVALVVALGLAFYGFAFGGAGTERPHIAHVTISGLIVDDDELLERLKKVET 84 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D A ++S+SSPGG+ Y GE IF+AI+ + +KPV+++V +AASAGY+++ A + I+ Sbjct: 85 SDQVKAAVISISSPGGTTYGGEKIFKAIRAISAKKPVVSDVRTLAASAGYMVATAGDTII 144 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A ++S+ GSIGV+FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A M++++V Sbjct: 145 AGDSSITGSIGVIFQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKAMIRNMV 204 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVV 227 SY+WFV LV++ R +P ++ L L + + LID + Sbjct: 205 VDSYNWFVDLVADRRKLPREEALKLARRHLLLPAGRHFQAKLIDTI 250 >gi|239947249|ref|ZP_04699002.1| signal peptide peptidase SppA [Rickettsia endosymbiont of Ixodes scapularis] gi|239921525|gb|EER21549.1| signal peptide peptidase SppA [Rickettsia endosymbiont of Ixodes scapularis] Length = 304 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 63/264 (23%), Positives = 115/264 (43%), Gaps = 18/264 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGG 78 +S D+ +A + + G I + L E IE+ + AL + ++SPGG Sbjct: 31 ASVFGDSKEVIAVLRLSGVIGKVSTMQSGLTLESLNELIEKAFKIKKLKALCLIINSPGG 90 Query: 79 SAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 S E I + I+ + +N+ + + + +MAAS GY ++C+ + I A+ +S++GSIGV+ Sbjct: 91 SPVQSELIAKRIRDLAKENKIKIYSFIEDMAASGGYWLACSGDRIYASYSSVIGSIGVVS 150 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 ++KLG+ + KA PF +N +++++D+ Y FV V Sbjct: 151 SGFGFHEAINKLGIERRVYTEGKNKAILDPFKPINKDDLKIIKDLQKQVYEHFVEYVKTR 210 Query: 197 RNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 R + + +G W G A GLID +G V + + + + Sbjct: 211 RVGKLTQQDEILFNGEFWAGQTALDYGLIDGIGDMYSVMKEKFGDNIKF------QYLCA 264 Query: 256 KNYWFCDLKNLSISSLLEDTIPLM 279 K W +S L ++ + Sbjct: 265 KQPWLKKKLGMSSKILADNFANSL 288 >gi|256256945|ref|ZP_05462481.1| Clp protease [Brucella abortus bv. 9 str. C68] Length = 736 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 114/295 (38%), Gaps = 24/295 (8%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64 L ++ + + + G I +E+ D Sbjct: 443 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 502 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122 A A+ +S++SPGG+ I+R I+ + +++K V V ++AAS GY+I+ A + I+ Sbjct: 503 HAPAVAISINSPGGAPVQLRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 562 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +S+VGSIGV+ L K+GV + K PF + ++ ++ + Sbjct: 563 ADPSSIVGSIGVVSASFGFPELLKKIGVERHVYTAGSNKVTLDPFQPEKAEDIERLKALQ 622 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + F+ +V E R L G WTG A +GLID +G + Y Sbjct: 623 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 679 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291 K+K P + L + + S + + GL A+W Sbjct: 680 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 731 >gi|254501444|ref|ZP_05113595.1| peptidase, S49 (protease IV) family [Labrenzia alexandrii DFL-11] gi|222437515|gb|EEE44194.1| peptidase, S49 (protease IV) family [Labrenzia alexandrii DFL-11] Length = 285 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 62/287 (21%), Positives = 118/287 (41%), Gaps = 19/287 (6%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERI---------ERISRDDSATAL 69 L+ + +++++P + + ++G I S L + ER A A+ Sbjct: 1 MLSSLRRFLPGFLKNDAPIIPVVRLQGPIGMSSPLRPGLSLATAALPLERAFSMKKAPAV 60 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 + ++SPGGS IF+ I+ + +N K V+ V ++AAS GY+I+ A + I+ +S Sbjct: 61 ALIVNSPGGSPVQSRLIFQRIRDLAKENEKDVLVFVEDVAASGGYMIALAGDEIIVDPSS 120 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 +VGSIGV+ + K+GV + + K PF P+ ++ ++ + + Sbjct: 121 VVGSIGVVAAGFGFTELIGKIGVERRVYTAGEKKVTLDPFQPEVPEDIEYLKTLQQEIHD 180 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F+ +V R L G+ WTG A +GL+D +G V + Y + + Sbjct: 181 TFIDMVKSRRADVLSDEPDLFTGKFWTGTSAVNLGLVDSLGDLRGVLKKRYGDKAEAKLI 240 Query: 248 KIKD--WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + + L + I ++ + W Sbjct: 241 SAPRGLFGRKGGVGVNLEAGALTAGLGNELISAAEERLM------WQ 281 >gi|189184683|ref|YP_001938468.1| SohB protease [Orientia tsutsugamushi str. Ikeda] gi|189181454|dbj|BAG41234.1| SohB protease [Orientia tsutsugamushi str. Ikeda] Length = 305 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 61/260 (23%), Positives = 117/260 (45%), Gaps = 14/260 (5%) Query: 33 DNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 +N V+ I + G I L IE+ TA+ + ++SPGGS Sbjct: 37 NNKSVVSVIHLTGIIGKVGSFKSGLTLHTLNSVIEKAFSFKKLTAVCLVVNSPGGSPVQS 96 Query: 84 EAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 E I I ++ N+K PV + V ++AAS GY ++CA I A+++S++GSIGV++ + Sbjct: 97 ELIASRILQLSNQKNVPVYSFVEDVAASGGYWLACAGKKIYASKSSIIGSIGVIYMGFGL 156 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + KLG+ + S K+ PF ++++Q++ ++ F+ + R Sbjct: 157 HEAIGKLGIKRRVYTSGNNKSILDPFMPEKDSDIKIIQNLQKKIHNHFISYIKSRRGDKI 216 Query: 202 DKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 + + +G W+G +A + GLID + + Y + K + Sbjct: 217 TQEDKVIYNGEFWSGEQALEYGLIDGINDMYSFLNTKYGDSIKIEYVSTKQSWIKRK--L 274 Query: 261 CDLKNLSISSLLEDTIPLMK 280 + ++ SL++ T+ ++ Sbjct: 275 GLIIDIGADSLVQKTLKAIE 294 >gi|294675947|ref|YP_003576562.1| S49 family peptidase [Rhodobacter capsulatus SB 1003] gi|294474767|gb|ADE84155.1| peptidase, S49 family [Rhodobacter capsulatus SB 1003] Length = 275 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 69/265 (26%), Positives = 118/265 (44%), Gaps = 20/265 (7%) Query: 36 PHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 P VA + ++G I L E +ER R A+ + ++SPGGS I Sbjct: 16 PRVAVVRLQGAIGISRPGAPGLSDAALAETLERAFRKGKPVAVALIINSPGGSPVQSSLI 75 Query: 87 FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I+ + PV + ++AAS GY ++CA++ I A TS+VGSIGV+ Sbjct: 76 AARIRALAAETGLPVHAFIEDVAASGGYWLACAADDIWADATSIVGSIGVISSGFGFADL 135 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + + GV + + K+ PF P+ V + +++ + F V++ R Sbjct: 136 IGRYGVERRVHTAGGSKSFLDPFRPEKPEDVDRLTRLLEDMHRAFKAWVTDRRGAKLAAG 195 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 L G IWTGA+A + GLID + ++LY K+ + P +++ L+ Sbjct: 196 ADLFTGEIWTGAQALETGLIDGLAHPGPKLRALYG-----DKVKLVPYGPRRSW----LR 246 Query: 265 NLSISSLLEDTIPLMKQTKVQGLWA 289 S E + +++ + + LWA Sbjct: 247 RFGASMAAEAAVSVLEAAEERALWA 271 >gi|299134685|ref|ZP_07027877.1| peptidase S49 [Afipia sp. 1NLS2] gi|298590495|gb|EFI50698.1| peptidase S49 [Afipia sp. 1NLS2] Length = 293 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 62/264 (23%), Positives = 109/264 (41%), Gaps = 14/264 (5%) Query: 38 VARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 V + + G I + + +E+ A A+ + ++SPGGS I+ Sbjct: 28 VPVVRLSGTIGAVTPLRPGLSLSGVSKLLEKAFETKRAKAVALVINSPGGSPVQSHQIYA 87 Query: 89 AIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 I+++ K PV+ V ++AAS GY+I+CA + I +S++GSIGV+ + + Sbjct: 88 RIRQLAETKKIPVLAFVEDVAASGGYMIACAGDEIFCDSSSILGSIGVIGGTFGFQDLIK 147 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 K+G+ + S K+ PF +P V ++ + + F+ LV SR Sbjct: 148 KIGIERRIYTSGEHKSSLDPFLPESPDDVARLKAIQREIHDSFIDLVKRSRGARLQGEAS 207 Query: 207 -LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L G W G + K+GL D +G V ++ Y G + I + + Sbjct: 208 YLFSGEYWAGERSVKLGLADGIGDLRSVVRARY--GERVRMPVIAPKSGLLSTLAGRKPG 265 Query: 266 LSISSLLEDTIPLMKQTKVQGLWA 289 L+ + + LWA Sbjct: 266 AEAMIGAGFADDLISALETRALWA 289 >gi|307352941|ref|YP_003893992.1| signal peptide peptidase SppA, 36K type [Methanoplanus petrolearius DSM 11571] gi|307156174|gb|ADN35554.1| signal peptide peptidase SppA, 36K type [Methanoplanus petrolearius DSM 11571] Length = 290 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 13/216 (6%) Query: 33 DNSPHVARIAIRGQI----------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 S V+ I I G I S+ + RI + + D A+++ + SPGGS Sbjct: 45 SESKGVSVIRIEGTIETGDFYSGGYVGSEYVGSRIRQAADDPLVEAIVLRVDSPGGSPAG 104 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + I +Q K +KPV + +MA SA Y IS ++ I A+ +L GSIG ++ + Sbjct: 105 AQEIIEDVQYAKTKKPVFVSMGDMATSAAYYISAYADKIYASPDTLTGSIGTIWTFIDTS 164 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L GV++ VKS MK S + + + + +Q +VD S+ F+ V RNI + Sbjct: 165 RSLQIEGVNVSIVKSGDMKDLTSQYRGLTDEEQEYVQAMVDESFERFLDDVLSQRNISRE 224 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 +++ G +A +GLID G E ++ Sbjct: 225 DVEE---AQLYRGEDAYDLGLIDEFGNLFETMEAAK 257 >gi|260883200|ref|ZP_05894814.1| Na+/H+ antiporter NhaA [Brucella abortus bv. 9 str. C68] gi|260872728|gb|EEX79797.1| Na+/H+ antiporter NhaA [Brucella abortus bv. 9 str. C68] Length = 723 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 114/295 (38%), Gaps = 24/295 (8%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64 L ++ + + + G I +E+ D Sbjct: 430 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 489 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122 A A+ +S++SPGG+ I+R I+ + +++K V V ++AAS GY+I+ A + I+ Sbjct: 490 HAPAVAISINSPGGAPVQLRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 549 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +S+VGSIGV+ L K+GV + K PF + ++ ++ + Sbjct: 550 ADPSSIVGSIGVVSASFGFPELLKKIGVERHVYTAGSNKVTLDPFQPEKAEDIERLKALQ 609 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + F+ +V E R L G WTG A +GLID +G + Y Sbjct: 610 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFLRKTYG--- 666 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291 K+K P + L + + S + + GL A+W Sbjct: 667 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 718 >gi|288960112|ref|YP_003450452.1| serine protease [Azospirillum sp. B510] gi|288912420|dbj|BAI73908.1| serine protease [Azospirillum sp. B510] Length = 296 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 56/282 (19%), Positives = 105/282 (37%), Gaps = 17/282 (6%) Query: 21 TVVYFSWSSHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIV 71 +++ P V+ + + G I + ++R A+ + Sbjct: 5 SLLAKLPFGPWRKAGPLVSVVRLTGVIGQGGPLRSGLTLAGVAPLLDRAFAPKDQKAVAL 64 Query: 72 SLSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLV 129 ++SPGGS I + I+ + K PV + AAS GY ++CA++ I A E+S++ Sbjct: 65 VVNSPGGSPVQSALIAKRIRDLAEEKKVPVFAFCEDAAASGGYWLACAADEIWADESSIL 124 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ + +++ G+ + + K PFS V ++ + + F Sbjct: 125 GSIGVVSSGFGLHGLIERHGIERRLYTAGDRKVLLDPFSPEREDGVAHLKALQADVHEAF 184 Query: 190 VRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 +V R L G W G +A +GLID +G V + + V + + Sbjct: 185 KAMVRSRRGDRLKGAEEDLFSGAFWAGRKALALGLIDGLGDIRSVMRGRFGEKVRLRVVE 244 Query: 249 -----IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ Y S D + + + Sbjct: 245 RERGLLRRAGLKAGYGDAPALTAGASEAFADALVSAARQSLD 286 >gi|227821040|ref|YP_002825010.1| putative peptidase [Sinorhizobium fredii NGR234] gi|227340039|gb|ACP24257.1| putative peptidase [Sinorhizobium fredii NGR234] Length = 288 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 60/265 (22%), Positives = 114/265 (43%), Gaps = 13/265 (4%) Query: 38 VARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + I + G I + +E+ A A+ +S++SPGGS I+ Sbjct: 20 IPTIRLHGTIMSGGGQFRPVLNLATVAPLLEKAFSVKEAPAVAISVNSPGGSPVQSRLIY 79 Query: 88 RAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + I+ + + +K V+ V ++AAS GY+I+ A + I+A +S+VGSIGV+ L Sbjct: 80 QRIRDLADEKKKRVLIFVEDVAASGGYMIALAGDEIIADPSSIVGSIGVVSGGFGFPELL 139 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV + + K PF + V+ ++ + + F++LV R Sbjct: 140 KKVGVERRVYTAGENKVVLDPFQPEKERDVEFLKSLQLDIHDTFIQLVKARRGSMLADHP 199 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQE-EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 + G WTG +++GL+D +G EV + + I+ + + Sbjct: 200 DIFSGLFWTGRRGQELGLVDALGDMRGEVKRRYGEKARLELIQPSRSLFGRRQPGAAVGG 259 Query: 265 NLSISSLLEDTIPLMKQTKVQGLWA 289 +++ L++ + + LWA Sbjct: 260 SIAAPLAASAAAGLLEAIEERALWA 284 >gi|327537611|gb|EGF24323.1| signal peptide peptidase SppA, 36K type [Rhodopirellula baltica WH47] Length = 397 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 57/323 (17%), Positives = 117/323 (36%), Gaps = 53/323 (16%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDSQE-------------LIERIERISRDDSATALI 70 ++ D+ +A + + G + D E++ I D + A++ Sbjct: 65 AIQINAKSSDSQSRIAIVDVDGLLIDQNFSGFGSMGENPVSLFREKMRHIESDPTILAVV 124 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI--IVAAETSL 128 + ++SPGG A + + ++ +K+ + + M G A++ IVA TS+ Sbjct: 125 LRINSPGGGVTASDMLAHQLKHLKSNRNIPVVACLMTTGTGGAYYLATHADAIVAHPTSV 184 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 VG IGV+ ++ L + + +KS SP + + ++Q + D + Sbjct: 185 VGGIGVILNNYNMEDTLGQFNIVSLPIKSGDKIDVGSPERMMQREERDLLQSMADEFHQR 244 Query: 189 FVRLVSESRNIPYDKTLVL-----------------------------------SDGRIW 213 F+ V SR T + DGR+ Sbjct: 245 FIEQVRSSRGERLVVTSEVDESNLDESDANKLDAGDLDRDDVDDAELKPSELIPFDGRVV 304 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY---WFCDLKNLSISS 270 +G A+K+GL+D G ++ + S + + F N+ ++S Sbjct: 305 SGLHAQKIGLVDQTGYLDDAVSLAGRMAGLSSSPALVLLRRDNDRAMSEFDVTPNVPMTS 364 Query: 271 LLEDTIPLMKQTKVQGLWAVWNP 293 +L +P + ++ + +W P Sbjct: 365 ILPIQLPGLDRSSMPTFLYLWQP 387 >gi|256112915|ref|ZP_05453828.1| Na(+)/H(+) antiporter 1 / protease IV [Brucella melitensis bv. 3 str. Ether] gi|265994355|ref|ZP_06106912.1| Na+/H+ antiporter NhaA [Brucella melitensis bv. 3 str. Ether] gi|262765468|gb|EEZ11257.1| Na+/H+ antiporter NhaA [Brucella melitensis bv. 3 str. Ether] Length = 736 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64 L ++ + + + G I +E+ D Sbjct: 443 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 502 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122 A A+ +S++SPGG+ I+R I+ + +++K V V ++AAS GY+I+ A + I+ Sbjct: 503 HAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 562 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +S+VGSIGV+ L K+GV + + K PF + ++ ++ + Sbjct: 563 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 622 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + F+ +V E R L G WTG A +GLID +G + Y Sbjct: 623 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMLSFLRKTYG--- 679 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291 K+K P + L + + S + + GL A+W Sbjct: 680 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 731 >gi|256044114|ref|ZP_05447025.1| Na(+)/H(+) antiporter 1 / protease IV [Brucella melitensis bv. 1 str. Rev.1] gi|189029205|sp|Q8YFI5|NHAA_BRUME RecName: Full=Na(+)/H(+) antiporter nhaA; AltName: Full=Sodium/proton antiporter nhaA Length = 736 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64 L ++ + + + G I +E+ D Sbjct: 443 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 502 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122 A A+ +S++SPGG+ I+R I+ + +++K V V ++AAS GY+I+ A + I+ Sbjct: 503 HAPAVAISINSPGGAPVQSRLIYRRIRDLAAEHQKKVFVFVEDVAASGGYMIALAGDEII 562 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +S+VGSIGV+ L K+GV + + K PF + ++ ++ + Sbjct: 563 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 622 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + F+ +V E R L G WTG A +GLID +G + Y Sbjct: 623 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMLSFLRKTYG--- 679 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291 K+K P + L + + S + + GL A+W Sbjct: 680 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 731 >gi|220916373|ref|YP_002491677.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter dehalogenans 2CP-1] gi|219954227|gb|ACL64611.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter dehalogenans 2CP-1] Length = 834 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 113/266 (42%), Gaps = 24/266 (9%) Query: 38 VARIAIRGQIE---------------DSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 + + + G I ++ + I R + D + A+++ + S GG A Sbjct: 544 IQVVRVEGIIARGRSRADPLGADGVAGAETIAAEIHRAADDAAVRAIVLRIESGGGDGLA 603 Query: 83 GEAIFR-AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + I+R A++ + KPVI + ++AAS GYL++ ++ I+A ++L GSIGV P + Sbjct: 604 SDLIWREAVRARRKGKPVIASMGDLAASGGYLVAVGADAILAERSTLTGSIGVFAAKPDL 663 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L KL + ++ + S P +++ V + Y FV V+E R + Sbjct: 664 SGLLAKLSIHPEAYQRGENARLVSVLKPWTPAERAVLEKQVGAFYRQFVARVAEGRRLTT 723 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 + ++ GR+WTG +A + L+D +G + + ++ Sbjct: 724 AEVEAVAGGRVWTGQQALERRLVDRIGTLADAIRLARERIGLAPDDVVE--------VRR 775 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287 + +++ + + + + GL Sbjct: 776 EDGGGALARVAGHALTAAPEPPLAGL 801 Score = 77.0 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 102/240 (42%), Gaps = 3/240 (1%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 L+ R+E D AL+V + E + + V+ RKPV+ + + Sbjct: 327 TLVTRLEAARDDPEVGALLVRIGGLSLGGGRVEELRALLAAVRARKPVLAYLEG-GGTRE 385 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP--FSE 169 Y ++ + I A + + G+ +++ L +LG++ VK+ K+ P Sbjct: 386 YWLATGATAIAAPPGAPLIVNGISTSQLFLRGGLARLGIAFDVVKAGAYKSAAEPLVRDA 445 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 +P+A + + V+D + FV V+E+R +P ++ L D ++T EAK GL+D V Sbjct: 446 PSPEAREATEAVLDDVFGRFVAQVAEARRLPPERVRALVDQGLFTAEEAKDAGLVDAVAW 505 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 +E+ + A+ + + P+ + I + + I +++ L A Sbjct: 506 PDELERWGRAVAGRRLFERGAYRPEPERLAQRWGRPAVIQVVRVEGIIARGRSRADPLGA 565 >gi|192289645|ref|YP_001990250.1| peptidase S49 [Rhodopseudomonas palustris TIE-1] gi|192283394|gb|ACE99774.1| peptidase S49 [Rhodopseudomonas palustris TIE-1] Length = 300 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 67/270 (24%), Positives = 119/270 (44%), Gaps = 19/270 (7%) Query: 36 PHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 P V + + G I L + ++R +A A+ ++++SPGGS I Sbjct: 31 PVVPVVRLSGTIGAVTPLRPGLTLAGVAKLLDRAFSTRNAKAVALAINSPGGSPVQSRLI 90 Query: 87 FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + I+ + K PV V ++AAS GY+I+CA++ I +S++GSIGV+ + Sbjct: 91 YLRIRALAAEKKLPVYAFVEDVAASGGYMIACAADEIYCDPSSILGSIGVVGGGFGFQEL 150 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-K 203 + K+GV + + KA+ PF +P+ V ++ + + F+ LV ESR + Sbjct: 151 IRKIGVERRLYTAGERKAQLDPFLPEDPQEVARLKVLQQEIHALFIALVKESRGTRLKGE 210 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L G W GA + +GL D +G V + G + +PP Sbjct: 211 ESKLFTGEYWAGATSVSLGLADSIGDLRAVLR-----GKFGDKVRTPLISPPTGLLANLS 265 Query: 264 KNLSISSLLEDTIPLMKQTKVQGL--WAVW 291 + S + D + + ++ + L A+W Sbjct: 266 RKSSGAGASLDGVAALPESMITALETRAIW 295 >gi|190573850|ref|YP_001971695.1| putative head-tail preconnector protein [Stenotrophomonas maltophilia K279a] gi|190011772|emb|CAQ45392.1| putative head-tail preconnector protein [Stenotrophomonas maltophilia K279a] Length = 402 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 14/221 (6%) Query: 30 HVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSP 76 +A + I G + QEL +++ D S A+++ + SP Sbjct: 50 SPPTTDGGIAVLPIYGTLVRRAVGLEAASGLTSYQELATQLDAAIADPSVAAIVLDIDSP 109 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GG + + ++ KPV ++MA SA Y + A+N T VGSIGV+ Sbjct: 110 GGESGGVFDLADRVRAAARIKPVWALANDMAYSAAYALGSAANRFFVTRTGGVGSIGVIA 169 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + + GV +V + K + +P ++ +A ++ VD Y FV V+ Sbjct: 170 MHADQSVRDAQDGVRYTTVFAGARKNDLNPHEPISDEAHAFLKSEVDRIYSLFVDTVASH 229 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 R + D G ++ G +A GL D VG +++ L Sbjct: 230 RGLTGDAVRATEAG-VFFGQDAVAAGLADAVGTFDDLLAEL 269 >gi|13476173|ref|NP_107743.1| proteinase [Mesorhizobium loti MAFF303099] gi|14026933|dbj|BAB53529.1| probable proteinase [Mesorhizobium loti MAFF303099] Length = 286 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 63/265 (23%), Positives = 111/265 (41%), Gaps = 13/265 (4%) Query: 37 HVARIAIRGQIEDSQELIE---------RIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + I + G I + + IE+ D A A+ +S++SPGGS IF Sbjct: 19 TIPVIRLHGTIMAGGQFRQNLSLASTAGLIEKAFSFD-APAVAISINSPGGSPVQSRLIF 77 Query: 88 RAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 R I+ + K + V ++AAS GY+I+ A + I A +S+VGSIGV+ + Sbjct: 78 RRIRDLAAEKNKKVLVFVEDVAASGGYMIAVAGDEIFADPSSIVGSIGVVSASFGFPELM 137 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K+GV + + KA PF + V+ ++ + + F+ LV E R Sbjct: 138 KKIGVERRVHTAGQNKAVLDPFKPEKKEDVERLKALQLEVHETFIDLVKERRGTKLKDDP 197 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA-LGVDQSIRKIKDWNPPKNYWFCDLK 264 L G WTG + ++GL+D +G V ++ + + I + + + Sbjct: 198 DLFTGLFWTGKKGLELGLVDALGDMRTVLKTRFGAKTQLRLITAPRGFLGRFGLFGSSKG 257 Query: 265 NLSISSLLEDTIPLMKQTKVQGLWA 289 + ++ + + LWA Sbjct: 258 FSAPDIAAAAASGVIDAAEERALWA 282 >gi|39934118|ref|NP_946394.1| peptidase S49 [Rhodopseudomonas palustris CGA009] gi|39647966|emb|CAE26486.1| possible protease SohB [Rhodopseudomonas palustris CGA009] Length = 300 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 67/270 (24%), Positives = 119/270 (44%), Gaps = 19/270 (7%) Query: 36 PHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 P V + + G I L + ++R +A A+ ++++SPGGS I Sbjct: 31 PVVPVVRLSGTIGAVTPLRPGLTLAGVAKLLDRAFSTRNAKAVALAINSPGGSPVQSRLI 90 Query: 87 FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + I+ + K PV V ++AAS GY+I+CA++ I +S++GSIGV+ + Sbjct: 91 YLRIRALAAEKKLPVYAFVEDVAASGGYMIACAADEIYCDPSSILGSIGVVGGGFGFQEL 150 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-K 203 + K+GV + + KA+ PF +P+ V ++ + + F+ LV ESR + Sbjct: 151 IRKIGVERRLYTAGERKAQLDPFLPEDPQEVARLKVLQQEIHALFIALVKESRGTRLKGE 210 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L G W GA + +GL D +G V + G + +PP Sbjct: 211 ESKLFTGEYWAGATSVSLGLADSIGDLRAVLR-----GKFGDKVRTPLISPPTGLLANLS 265 Query: 264 KNLSISSLLEDTIPLMKQTKVQGL--WAVW 291 + S + D + + ++ + L A+W Sbjct: 266 RKSSGAGASLDGVAALPESMITALETRAIW 295 >gi|260563474|ref|ZP_05833960.1| Na+/H+ antiporter nhaA [Brucella melitensis bv. 1 str. 16M] gi|265990527|ref|ZP_06103084.1| Na+/H+ antiporter NhaA [Brucella melitensis bv. 1 str. Rev.1] gi|260153490|gb|EEW88582.1| Na+/H+ antiporter nhaA [Brucella melitensis bv. 1 str. 16M] gi|263001311|gb|EEZ13886.1| Na+/H+ antiporter NhaA [Brucella melitensis bv. 1 str. Rev.1] Length = 723 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64 L ++ + + + G I +E+ D Sbjct: 430 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 489 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122 A A+ +S++SPGG+ I+R I+ + +++K V V ++AAS GY+I+ A + I+ Sbjct: 490 HAPAVAISINSPGGAPVQSRLIYRRIRDLAAEHQKKVFVFVEDVAASGGYMIALAGDEII 549 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +S+VGSIGV+ L K+GV + + K PF + ++ ++ + Sbjct: 550 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 609 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + F+ +V E R L G WTG A +GLID +G + Y Sbjct: 610 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMLSFLRKTYG--- 666 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291 K+K P + L + + S + + GL A+W Sbjct: 667 --DKVKLKLIQPQRGLLGRKLPGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 718 >gi|32471387|ref|NP_864380.1| proteinase IV homolog yteI [Rhodopirellula baltica SH 1] gi|32443228|emb|CAD72059.1| proteinase IV homolog yteI [Rhodopirellula baltica SH 1] Length = 468 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 57/317 (17%), Positives = 113/317 (35%), Gaps = 53/317 (16%) Query: 30 HVEDNSPHVARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSP 76 D+ +A + + G + D E++ I D + A+++ ++SP Sbjct: 142 KSSDSQSRIAIVDVDGLLIDQNFSGFGSMGENPVSLFREKMRHIESDPTILAVVLRINSP 201 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI--IVAAETSLVGSIGV 134 GG A + + +Q +K+ + + M G A++ IVA TS+VG IGV Sbjct: 202 GGGVTASDMLAHQLQHLKSNRNIPVVACLMTTGTGGAYYLATHADAIVAHPTSVVGGIGV 261 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + ++ L + + +KS SP + + ++Q + D + F+ V Sbjct: 262 ILNNYNMEDTLGQFNIVSLPIKSGDKIDVGSPERMMQREERDLLQSMADEFHQRFIEQVR 321 Query: 195 ESRNIPY-------------DKTLVL----------------------SDGRIWTGAEAK 219 SR L DGR+ +G A+ Sbjct: 322 SSRGERLVVTSEVDESNLDESDADKLDAGDLDRDDMDDAELKPSDLIPFDGRVVSGLHAQ 381 Query: 220 KVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY---WFCDLKNLSISSLLEDTI 276 +GL+D G ++ + S + + F N+ ++S+L + Sbjct: 382 TIGLVDQTGYLDDAVSLAGRMAGLSSSPALVLLRRDNDRAMSEFDVTPNVPMTSILPIQL 441 Query: 277 PLMKQTKVQGLWAVWNP 293 P + ++ + +W P Sbjct: 442 PGLDRSSMPTFLYLWQP 458 >gi|317509305|ref|ZP_07966925.1| peptidase family S49 [Segniliparus rugosus ATCC BAA-974] gi|316252361|gb|EFV11811.1| peptidase family S49 [Segniliparus rugosus ATCC BAA-974] Length = 311 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 58/277 (20%), Positives = 113/277 (40%), Gaps = 21/277 (7%) Query: 28 SSHVEDNSPHVARIAIRGQI-----------EDSQELIERIERISRDDSATALIVSLSSP 76 SS + V+ + + G I ++Q L + R +A A+ + ++SP Sbjct: 37 SSRKKVGGKIVSVVRLDGVIRSGGGPFGRGALNAQNLEAPLAEAFRVPNAVAVALIINSP 96 Query: 77 GGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GGS I I+++ + KPV+ ++AAS GY ++CA++ I + + +GSIGV Sbjct: 97 GGSPAQSALIGDRIRQLSAKHEKPVLAFCEDVAASGGYWLACAADEIFVSSGTAIGSIGV 156 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + + ++KLG+ + + KA PF P+ + + + + F+ V Sbjct: 157 VSSSFGLTDAIEKLGLERRVHTAGLNKARLDPFMPEKPEDIAWLTGIQTDIHKVFIDWVK 216 Query: 195 ESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 E R L + +W G A ++G+ D VG V + K + Sbjct: 217 ERRGDKLSGTDEELFNADVWIGRRAVELGIADAVGSLRGVLAERF------PDAKPYEIK 270 Query: 254 PPKNYWFCDLKNLSISSLLEDTI-PLMKQTKVQGLWA 289 P + S+ + + + + + +W+ Sbjct: 271 PKQQILQRLGLAASVEDIALRVMEGAVSSVERRAMWS 307 >gi|92118679|ref|YP_578408.1| peptidase S49 [Nitrobacter hamburgensis X14] gi|91801573|gb|ABE63948.1| peptidase S49 [Nitrobacter hamburgensis X14] Length = 293 Score = 107 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 64/270 (23%), Positives = 109/270 (40%), Gaps = 18/270 (6%) Query: 33 DNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 P V + + G I + + +ER D+A A+ + ++SPGGS Sbjct: 19 SGKPVVPVVRLSGVIGAVTPLRPGMTLAGVAKTLERAFAVDNAKAVALLVNSPGGSPVQS 78 Query: 84 EAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 IF I+++ K PV+ V ++AAS GY+I+CA + IV +S++GSIGV+ Sbjct: 79 RQIFLRIRQLAQEKKLPVLVFVEDVAASGGYMIACAGDEIVCDPSSILGSIGVVGGSFGF 138 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + K+GV + + KA PF NP V ++ + + F+ LV SR Sbjct: 139 TELIGKIGVERRLYTAGEHKATLDPFLPENPDDVARLKAIQREIHATFIELVKTSRGARL 198 Query: 202 D-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 + +L G W G + +GL D +G ++ + V + P Sbjct: 199 KGEDDLLFTGEYWAGERSVALGLADAIGDLRSTLRARFGDKVLMPLIA------PSTGLL 252 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 L + + + A+ Sbjct: 253 AGLLGRKAGAGTLTSFDAALGLPDDLISAL 282 >gi|157803850|ref|YP_001492399.1| protease sohB [Rickettsia canadensis str. McKiel] gi|157785113|gb|ABV73614.1| possible protease sohB [Rickettsia canadensis str. McKiel] Length = 304 Score = 107 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 57/261 (21%), Positives = 109/261 (41%), Gaps = 18/261 (6%) Query: 31 VEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAY 81 D +A + + G I + L E IE+ + AL + ++SPGGS Sbjct: 34 FGDAKNVIAVLRLSGVIGKVSTMQSGLTLESLNELIEKAFKIKKLKALCLIINSPGGSPV 93 Query: 82 AGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 E I + I+ + +N+ + + + +MAAS GY ++C+ + I A +S++GSIGV+ Sbjct: 94 QSELIAKRIRDLAKENKIKIYSFIEDMAASGGYWLACSGDRIYALSSSIIGSIGVVSSGF 153 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 ++KLG+ + K+ PF +N +++++++ Y FV + R Sbjct: 154 GFHEAINKLGIERRVYTEGKNKSVLDPFQPINKDDLKIIKNLQKQVYEHFVDYIKTRRAG 213 Query: 200 PYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + + +G W G A GLID +G V + + + + K Sbjct: 214 KLTQQDEILFNGEFWAGQTALDYGLIDGIGDMYSVMKQKFGDNIKF------QYVCAKQP 267 Query: 259 WFCDLKNLSISSLLEDTIPLM 279 W + ++ + Sbjct: 268 WLKKKLGMGSKIFTDNLANSL 288 >gi|224372341|ref|YP_002606713.1| PfaP [Nautilia profundicola AmH] gi|223589924|gb|ACM93660.1| PfaP [Nautilia profundicola AmH] Length = 300 Score = 107 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 68/286 (23%), Positives = 125/286 (43%), Gaps = 14/286 (4%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSW---------SSHVEDNSPHVARIAIRGQIEDS--Q 51 F +K IK + V+ ++ L + S + P+VA I I I Sbjct: 15 FKIKAIKEKVVLFGVILLILAELVALGVFLKKTLSPSIPITKPYVAVININKTITVDYIN 74 Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 +L++++ + +D + ++ ++PGGS A + ++ + K V V MAAS G Sbjct: 75 KLMDKMNALKKDKNCKEYLLVFNTPGGSPSASDEFNAYLKFLNKSKKVNVYVESMAASGG 134 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I A IVA + ++VGSIGV+ + + K+GV + K S F + + Sbjct: 135 YYIISAIKPIVANKNAVVGSIGVIMPHYVIGKLAKKIGVEEDDITVGKYKKPISLFKKAS 194 Query: 172 PKAVQMMQDV-VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 P+ + + + +Y F+++V+E RNI DK ++G+I+ + K L+D + Sbjct: 195 PEQKEYIMKNLLLPTYDNFLKIVAEDRNISIDKLKNYAEGKIFIATK-VKGVLVDKISTL 253 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 E + D I + + K + + + LL+ I Sbjct: 254 AEFKNEIKKRLGDVEFINI-NLDKKKFPYLNIKLDSDLGELLKGYI 298 >gi|225851933|ref|YP_002732166.1| Na+/H+ antiporter NhaA [Brucella melitensis ATCC 23457] gi|225640298|gb|ACO00212.1| Na+/H+ antiporter NhaA [Brucella melitensis ATCC 23457] Length = 763 Score = 107 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 114/295 (38%), Gaps = 24/295 (8%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64 L ++ + + + G I +E+ D Sbjct: 470 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 529 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122 A A+ +S++SPGG I+R I+ + +++K V V ++AAS GY+I+ A + I+ Sbjct: 530 HAPAVAISINSPGGVPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 589 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +S+VGSIGV+ L K+GV + + K PF + ++ ++ + Sbjct: 590 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 649 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + F+ +V E R L G WTG A +GLID +G + Y Sbjct: 650 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMLSFLRKTYG--- 706 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291 K+K P + L + + S + + GL A+W Sbjct: 707 --DKVKLKLIQPQRGLLGRKLSGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 758 >gi|148284091|ref|YP_001248181.1| periplasmic serine proteases (ClpP class) [Orientia tsutsugamushi str. Boryong] gi|146739530|emb|CAM79252.1| Periplasmic serine proteases (ClpP class) [Orientia tsutsugamushi str. Boryong] Length = 305 Score = 107 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 61/260 (23%), Positives = 117/260 (45%), Gaps = 14/260 (5%) Query: 33 DNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 +N V+ I + G I L IE+ TA+ + ++SPGGS Sbjct: 37 NNKSVVSVIHLTGIIGKVGSFKSGLTLHTLNSVIEKAFSFKKLTAVCLVVNSPGGSPVQS 96 Query: 84 EAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 E I I ++ N+K PV + V ++AAS GY ++CA I A+++S++GSIGV++ + Sbjct: 97 ELIASRILQLSNQKNVPVYSFVEDVAASGGYWLACAGKKIYASKSSIIGSIGVIYMGFGL 156 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + KLG+ + S K+ PF ++++Q++ ++ F+ + R Sbjct: 157 HEAIGKLGIKRRVYTSGNNKSILDPFMPEKDSDIKIIQNLQKKIHNHFISYIKSRRGDKI 216 Query: 202 DKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 + + +G W+G +A + GLID + + Y + K + Sbjct: 217 TQEDKVIYNGEFWSGEQALEYGLIDGINDMYSFLNTKYGDSIKIEYVSTKQSWIKRK--L 274 Query: 261 CDLKNLSISSLLEDTIPLMK 280 + ++ SL++ T+ ++ Sbjct: 275 GLIIDIGADSLVQKTLKAIE 294 >gi|269124167|ref|YP_003306744.1| peptidase S49 [Streptobacillus moniliformis DSM 12112] gi|268315493|gb|ACZ01867.1| peptidase S49 [Streptobacillus moniliformis DSM 12112] Length = 552 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 53/262 (20%), Positives = 121/262 (46%), Gaps = 13/262 (4%) Query: 38 VARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 + I G I + +++E+IE + + +I+ ++SPGGSA E I++ Sbjct: 285 IGVICAEGAIMPNNKSESIITYDDMLEKIESLQEIKNLKGVILRINSPGGSALESERIYK 344 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 ++ + P+ + +AAS GY IS + + +++ GSIGV+ YP +K+ Sbjct: 345 ELKNL--DVPIFISMSSVAASGGYYISTVAKKVFLNPSTITGSIGVVSMYPTFDEISNKV 402 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 G++I++V S + + + + + Y F + V +R + + ++ Sbjct: 403 GLNIETVNSGVATEIFDLKQPLTDELREKLIQSMRDVYIEFKKHVMTARVMTDEGLEKIA 462 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK--NYWFCDLKNL 266 G+IW G EA ++GL D +GG ++ ++L + + + ++ N+ Sbjct: 463 QGKIWLGNEAVEIGLADKIGGFDDCLKALLDYLNIKEYKLHFTKRKISLVDSLKNNISNI 522 Query: 267 SISSLLEDTIPLMKQTKVQGLW 288 ++ + + + +++ K + ++ Sbjct: 523 PFTAEISNELNMIQANKYKPMY 544 Score = 58.1 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 73/183 (39%), Gaps = 3/183 (1%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 + E +++I++ ++ +I+ + +A + + + + K VI + Sbjct: 73 DFKEALKKINQTETVEEVILDVDKMELTAVQIDELKDLFKDMNKNKKVIALASNLDNIKY 132 Query: 112 YLISCASN-IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFS 168 + A + + S + G + Y K DK+GV + + K+ E Sbjct: 133 RIAMLADTIYMYNSLNSSMLLKGYSRSFIYFKKLFDKIGVKVNVLHIGDYKSAGENYHKE 192 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 E++ + + + D F+ + + RN+ + L+ D + +AK+ GLID + Sbjct: 193 EMSEEQRTSITRIYDKMLENFIDEIKDRRNVDIKEKLLNGDLVLINHIKAKEYGLIDGIS 252 Query: 229 GQE 231 + Sbjct: 253 NLD 255 >gi|83945422|ref|ZP_00957770.1| signal peptide peptidase SppA [Oceanicaulis alexandrii HTCC2633] gi|83851256|gb|EAP89113.1| signal peptide peptidase SppA [Oceanicaulis alexandrii HTCC2633] Length = 598 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 61/284 (21%), Positives = 122/284 (42%), Gaps = 17/284 (5%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-------------DSQELIERIERISR 62 SLV + V + + +P +A I +G I L + ++ +R Sbjct: 284 SLVEIAVYHRQMTPPAAPQAPVIALIEAQGDIVTGASEAGFGAVSVGGDTLADALDAAAR 343 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNII 121 A+I+ + SPGGS A + I+ A+ + + + + MAAS GY I+ ++ I Sbjct: 344 APDVAAIILRIDSPGGSPIASDQIWDAVMRARQSGTPVIASMGAMAASGGYYIAAPADRI 403 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-PMKAEPSPFSEVNPKAVQMMQD 180 +A ++L GSIG+ + L ++G++++ + S + + Sbjct: 404 IANASTLTGSIGMFGGKFVIDEALGRVGLNLEPLHVGGEYALAQSVSQPWSEAQEAGYRA 463 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 + + Y F R +E R++P + L+ GR+WTG +A ++GL+D +GG + S L Sbjct: 464 LAEDVYEDFTRRAAEGRDLPLARIQTLARGRVWTGRQALELGLVDEIGGFDAALASAQEL 523 Query: 241 GVDQSIRKI--KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282 + + + K + + L +S ++ + + Sbjct: 524 AGLSANQPVRLKRYPARPDGLEALQALLGVSVEGVESAAALNRL 567 Score = 78.9 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 98/302 (32%), Gaps = 25/302 (8%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPH---VARIAIRGQIEDSQ--------------ELI 54 +++ + L + SP V I +R D EL Sbjct: 28 FLIFLIGGLIGAALEDAGDAALTSPGRNMVLTIDLRTPRLDQPSASPFAFAEPLSMVELS 87 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 +E D +A+ V ++ A E I + + + + + L Sbjct: 88 RALEHARTDSRVSAVFVRANTLSLPAAQAEEISALLAALSDAGKPVIAHAQGFEGGSVLP 147 Query: 115 SCAS---NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSE 169 A + I +T+ ++G+ + ++ ++ GV + ++ K + Sbjct: 148 YLAVGGADEIWMQDTASFTAVGLAVETLFLGGLFEQFGVEPQMIQLHEYKNAADTLTRDG 207 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 + + S Y + ++ +R + + + ++ EA +GLID +G Sbjct: 208 YTDAHREATLSWLGSIYEVALETIAPARGLEVETLRSRLEAGPYSAEEALDLGLIDRLGH 267 Query: 230 QEEVWQSLYALGVD-QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 E QS+ S+ +I ++ + +L+E ++ G Sbjct: 268 AAEARQSVLDRAGSGSSLVEIAVYHRQMTPPAA--PQAPVIALIEAQGDIVTGASEAGFG 325 Query: 289 AV 290 AV Sbjct: 326 AV 327 >gi|260431642|ref|ZP_05785613.1| peptidase, family S49 [Silicibacter lacuscaerulensis ITI-1157] gi|260415470|gb|EEX08729.1| peptidase, family S49 [Silicibacter lacuscaerulensis ITI-1157] Length = 265 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 115/257 (44%), Gaps = 19/257 (7%) Query: 36 PHVARIAIRGQI-------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 P VA + + G I L +E+ R +A+ + ++SPGGS I Sbjct: 12 PVVAVVRLSGAIGMAGRASMSDTALAPVLEKAFRKGKPSAVALEINSPGGSPVQSSLIGA 71 Query: 89 AIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 I+++ + PV V ++AAS GY ++ +++ I A ++S++GSIGV+ F+ Sbjct: 72 RIRRLADELNVPVHAFVEDVAASGGYWLAASADRIWADDSSVLGSIGVISSGFGAHVFIA 131 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 + G+ + + K+ PF+ P+ V ++ +++ + F+ V R D+T Sbjct: 132 RQGIERRVHTAGQSKSMLDPFAPEKPEDVARLRGLLEDIHQNFIAHVKARRGDRLDETAD 191 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 L G +W A+ +GLID + + Q L+ + + + K W Sbjct: 192 LFTGEVWLARRAQDLGLIDGIAHLKPKMQELFG-----DKVRFRRYGLRKPIWSRF---- 242 Query: 267 SISSLLEDTIPLMKQTK 283 + + +D + ++++ Sbjct: 243 -GADMAQDALAMLEERA 258 >gi|91205146|ref|YP_537501.1| Signal peptide peptidase SppA, 36K type [Rickettsia bellii RML369-C] gi|157827519|ref|YP_001496583.1| Signal peptide peptidase SppA, 36K type [Rickettsia bellii OSU 85-389] gi|91068690|gb|ABE04412.1| Signal peptide peptidase SppA, 36K type [Rickettsia bellii RML369-C] gi|157802823|gb|ABV79546.1| Signal peptide peptidase SppA, 36K type [Rickettsia bellii OSU 85-389] Length = 304 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 63/265 (23%), Positives = 116/265 (43%), Gaps = 18/265 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPG 77 ++S D+ VA + + G I + L E IE+ + AL + ++SPG Sbjct: 30 FASIFGDSKEVVAVLRLNGVIGKVSTVQSGLTLESLNELIEKAFKIKKLKALCLIINSPG 89 Query: 78 GSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 GS E I + I+ + +++ + + + +MAAS GY ++CA + I A +S++GSIGV+ Sbjct: 90 GSPVQSELIAKRIRTLAKEHKIKIYSFIEDMAASGGYWLACAGDQIYALHSSIIGSIGVV 149 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 ++KLG+ + KA PF +N + V++++D+ Y FV V Sbjct: 150 SSGFGFHEAINKLGIERRVYTEGKNKAVLDPFKPINKEDVKIIKDLQKQVYEHFVDYVKT 209 Query: 196 SRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 R + + +G W G A GLID +G ++ + + + Sbjct: 210 RRVGKLTQQDDILFNGEFWAGRTALDYGLIDDLGDMYSTMKAKFGDNIKF------QYLC 263 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLM 279 K W ++ L ++ + Sbjct: 264 AKQPWIKKKLGMASKILTDNFADSL 288 >gi|332559551|ref|ZP_08413873.1| Peptidase S49 [Rhodobacter sphaeroides WS8N] gi|332277263|gb|EGJ22578.1| Peptidase S49 [Rhodobacter sphaeroides WS8N] Length = 250 Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 62/251 (24%), Positives = 107/251 (42%), Gaps = 14/251 (5%) Query: 41 IAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 I ++G I Q L IE+ R + + ++SPGGS I I+++ Sbjct: 2 IRLQGMIASGPRGGLSDQGLAAVIEKAFRRGKPAGVALVINSPGGSPVQSSLITARIRRL 61 Query: 94 KNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 K V V ++AAS GY ++CA + I E+SLVGSIGV+F F+ + G+ Sbjct: 62 AFEKGVRVHAFVEDVAASGGYWLACAGDEIWVDESSLVGSIGVIFSSFGFHEFMARNGIE 121 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + + K+ PF P+ V+ ++ + + + F+ V +R D L + Sbjct: 122 RRVHTAGRSKSLADPFLPEKPEDVERLKALQEPIHRAFIEHVKRNRGARLDLNADLFNAD 181 Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 +WTG EA ++GL D V Q +Y ++ + + +L+ +L Sbjct: 182 VWTGQEAVRLGLADGVAHLVPKLQEIYG-----DKVRLVPYGQRRPLLQRLGMSLAGQAL 236 Query: 272 LEDTIPLMKQT 282 E + Sbjct: 237 AEVENRALWAR 247 >gi|303245308|ref|ZP_07331592.1| signal peptide peptidase SppA, 36K type [Desulfovibrio fructosovorans JJ] gi|302493157|gb|EFL53019.1| signal peptide peptidase SppA, 36K type [Desulfovibrio fructosovorans JJ] Length = 433 Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 47/216 (21%), Positives = 102/216 (47%), Gaps = 10/216 (4%) Query: 39 ARIAIRGQ----------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 A + + G I ++E+ + + + D S A+++ + SPGG+ E + Sbjct: 56 AVVDMSGPLSKDGSYWWGIGSTREIGAGLLQAAADPSVKAILLDVDSPGGTVDGTEELAG 115 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 + V +KP+ ++ ASA Y I + I ++ +GSIGV+ + + +++ Sbjct: 116 IARIVAAQKPLYVYASDLMASAAYWIGSQAKEIGTQASAQIGSIGVVLTHTDWSGWDEQM 175 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 GV I + + KA +P ++ +A +Q +D Y F+ V+ R + ++ + ++ Sbjct: 176 GVDITYLTAGHFKAMGNPDEPLSDEARAYLQQQLDEVYGLFLDAVAAGRRVSREQAMAMA 235 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 DG+I+ G +A ++GL+D + + + + Sbjct: 236 DGKIFLGRQALELGLVDRLESRADFINRIVQEVHMD 271 >gi|149194025|ref|ZP_01871123.1| proteinase IV [Caminibacter mediatlanticus TB-2] gi|149135978|gb|EDM24456.1| proteinase IV [Caminibacter mediatlanticus TB-2] Length = 300 Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 65/287 (22%), Positives = 129/287 (44%), Gaps = 14/287 (4%) Query: 3 FVLKKIKTRYVMLS----------LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-- 50 F +K +K + V+ + + + +++ + P+VA I I I Sbjct: 14 FKIKALKEKVVLFGVIILIIAEIIFLGSLLKKTLFPTNINLHKPYVAVININKTITVDYI 73 Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 ++ ++++ + +D + ++ ++PGGS A + ++ V +K V V MAAS Sbjct: 74 DKITKKMDALLKDKNCKEFLLVFNTPGGSPSASDEFNAYLKYVNKKKRVNVYVESMAASG 133 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 GY I A IVA + ++VGSIGV+ + +K DK+G+ S+ K S F + Sbjct: 134 GYYIISAIKPIVANKNAVVGSIGVIMPHFVLKKLADKIGIEEDSLTIGKYKEPVSLFRKF 193 Query: 171 NPKAVQMMQDV-VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 + K + ++ + +Y F++ V++ RNI DK +DG+I+ + K + L+D + Sbjct: 194 SDKDKEYLKTHLLLPTYENFLKTVAKDRNISVDKLKQYADGKIYVASIVKGI-LVDKIST 252 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 +V + + K +F + I L++ + Sbjct: 253 LIDVKEEIKKRLGKNIKFYNISLEKQKVPFFNIKLSSDIGEFLKEIV 299 >gi|326408432|gb|ADZ65497.1| Na+/H+ antiporter NhaA [Brucella melitensis M28] gi|326538147|gb|ADZ86362.1| Na+/H+ antiporter NhaA [Brucella melitensis M5-90] Length = 736 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 114/295 (38%), Gaps = 24/295 (8%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64 L ++ + + + G I +E+ D Sbjct: 443 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 502 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122 A A+ +S++SPGG I+R I+ + +++K V V ++AAS GY+I+ A + I+ Sbjct: 503 HAPAVAISINSPGGVPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 562 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +S+VGSIGV+ L K+GV + + K PF + ++ ++ + Sbjct: 563 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 622 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + F+ +V E R L G WTG A +GLID +G + Y Sbjct: 623 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMLSFLRKTYG--- 679 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291 K+K P + L + + S + + GL A+W Sbjct: 680 --DKVKLKLIQPQRGLLGRKLSGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 731 >gi|255263417|ref|ZP_05342759.1| peptidase S49 [Thalassiobium sp. R2A62] gi|255105752|gb|EET48426.1| peptidase S49 [Thalassiobium sp. R2A62] Length = 264 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 60/240 (25%), Positives = 109/240 (45%), Gaps = 13/240 (5%) Query: 30 HVEDNSPHVARIAIRGQIE------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 P V+ + ++G I D L +++ +A+ + ++SPGGS Sbjct: 6 PFRKTKPSVSVVRLQGVITSGGRGLDDASLAPLLKKAFSKGKPSAVALVINSPGGSPVQS 65 Query: 84 EAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 I I+++ K PV V ++AAS GY ++ A++ I +S+VGSIGV+ + Sbjct: 66 SLIGARIRRLSQEKDIPVFAFVEDVAASGGYWLASAADEIFVDPSSVVGSIGVISAGFGL 125 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + + GV + + K+ PF P V+ ++ +++ ++ F VSE R Sbjct: 126 NEAIGRYGVERRVYTAGKSKSMLDPFQAEKPADVKRLKGMLEQIHNSFKSHVSERRAGKL 185 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 D+T L G IW GA + +VGL D VG V + + K + ++ ++ + Sbjct: 186 DETQDLFTGEIWVGAASIEVGLADAVGHLVPVMKDRFG-----EDVKFRSFDRKRSLFQR 240 >gi|158312662|ref|YP_001505170.1| signal peptide peptidase SppA, 36K type [Frankia sp. EAN1pec] gi|158108067|gb|ABW10264.1| signal peptide peptidase SppA, 36K type [Frankia sp. EAN1pec] Length = 651 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 106/232 (45%), Gaps = 1/232 (0%) Query: 39 ARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 A + G + + + +RD S A + + SPGGS A + + R I++ ++ Sbjct: 363 ATMPFSGPVLAADAVTAAFRAAARDPSVAAAVFRVESPGGSYVASDVVRREIERFRSTGR 422 Query: 99 VIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + +AAS GY ++ A ++IVA +L GSIGV V+ DK+G+ +V + Sbjct: 423 PVVVSMGSVAASGGYFVALAGDVIVANPGTLTGSIGVFGGKQVVRDLFDKVGIGFGAVAA 482 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 SP + + +D Y FV V+++R + + L+ GR+WTGA+ Sbjct: 483 GENALMMSPRQPFTQAGRAKLDEFLDRVYADFVDKVAQARRMSHGDAHELARGRVWTGAD 542 Query: 218 AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 A + GL+D +GG +A + + PK+ F L+ S Sbjct: 543 AHRHGLVDELGGLAHAIDLAWARAGLPAGETPRVRLTPKSSVFDRLRAPKSS 594 Score = 80.4 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 90/201 (44%), Gaps = 7/201 (3%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 +E+++ + R +RD+ A+ ++ +++ G + I A+ + + + Sbjct: 51 TGLREIVDGLRRAARDERASVVVAHVAACGMPLARVQEIRDAVAEFRASGGAAYAYADTF 110 Query: 108 ASAG-----YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 G Y ++CA + I A +G GV + P+V+ LD+LGV+++ + K Sbjct: 111 GEFGGGTVAYYLACAFDEIWLAPPGDLGLTGVAMETPFVRDALDRLGVTVEIGQRHEYKN 170 Query: 163 EPSP--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKK 220 + + P + + +VDSS V +++SR + D+ + D G A Sbjct: 171 AVNTLVERDFTPAHREALARIVDSSAEQIVAGIAQSRGLSADQVRRMIDIAPLAGHVALS 230 Query: 221 VGLIDVVGGQEEVWQSLYALG 241 GL+D +G ++E+++ Sbjct: 231 AGLVDRIGYRDEIYEYARERA 251 >gi|265999603|ref|ZP_05467088.2| Na(+)/H(+) antiporter nhaA [Brucella melitensis bv. 2 str. 63/9] gi|263094920|gb|EEZ18628.1| Na(+)/H(+) antiporter nhaA [Brucella melitensis bv. 2 str. 63/9] Length = 723 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 114/295 (38%), Gaps = 24/295 (8%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64 L ++ + + + G I +E+ D Sbjct: 430 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 489 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122 A A+ +S++SPGG I+R I+ + +++K V V ++AAS GY+I+ A + I+ Sbjct: 490 HAPAVAISINSPGGVPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 549 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +S+VGSIGV+ L K+GV + + K PF + ++ ++ + Sbjct: 550 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 609 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + F+ +V E R L G WTG A +GLID +G + Y Sbjct: 610 LEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMLSFLRKTYG--- 666 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------AVW 291 K+K P + L + + S + + GL A+W Sbjct: 667 --DKVKLKLIQPQRGLLGRKLSGIGMDSGSVEPAQIAAHLG-DGLLCVAEEKAIW 718 >gi|119385040|ref|YP_916096.1| peptidase S49 [Paracoccus denitrificans PD1222] gi|119374807|gb|ABL70400.1| peptidase S49 [Paracoccus denitrificans PD1222] Length = 267 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 104/250 (41%), Gaps = 18/250 (7%) Query: 37 HVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 VA + ++G I L +ER + A+ ++L+SPGGS I Sbjct: 11 TVAVLRLQGAIGVAGRGGPGLSDAALAPLLERAFKRRKPAAVALALNSPGGSPVQSSLIG 70 Query: 88 RAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+++ + PV V ++AAS GY ++ A++ I A ++S++GSIGV+ + Sbjct: 71 ARIRRLAEERGIPVHAFVEDVAASGGYWLATAADYIWADDSSVLGSIGVISSGFGFVELI 130 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 + G+ + + K+ PF P+ ++ + ++ + F V R + Sbjct: 131 QRHGIERRVHTAGRSKSMLDPFRPQTPEDIERLDRLLGPIHEAFKEQVRARRGNRLPEDR 190 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L G IWTG EA ++GL D + + LY +++ + Sbjct: 191 DLFTGEIWTGREAVELGLADGIAHLVPKMRELYGK-------EVRFLTYGQRVPLLRRFG 243 Query: 266 LSISSLLEDT 275 LS ++ Sbjct: 244 LSADDFIDGI 253 >gi|86748216|ref|YP_484712.1| peptidase S49 [Rhodopseudomonas palustris HaA2] gi|86571244|gb|ABD05801.1| Peptidase S49 [Rhodopseudomonas palustris HaA2] Length = 302 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 63/273 (23%), Positives = 112/273 (41%), Gaps = 26/273 (9%) Query: 30 HVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSA 80 + P V + + G I + + +ER +A A+ ++++SPGGS Sbjct: 25 RFRSDIPVVPVVRLSGVIGAVTPLRPGMSLAGVAKLLERAFATRNAKAVALAINSPGGSP 84 Query: 81 YAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 I+ I+ + K PV V ++AAS GY+I+C ++ I +S+VGSIGV+ Sbjct: 85 VQSRLIYLRIRALAAEKKLPVYAFVEDVAASGGYMIACGADEIYCDPSSIVGSIGVVGGS 144 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + + K+GV + + KA+ PF +P V ++ + + F+ LV +SR Sbjct: 145 FGFQELIKKIGVERRLYTAGEHKAQLDPFLPEDPGDVARVKALQQEIHALFISLVKDSRG 204 Query: 199 IPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 L G W GA + +GL D +G V + + V + Sbjct: 205 ARLKGDDAKLFSGEYWAGATSVSLGLSDAIGDLRAVLRDKFGDKVRTPVI---------- 254 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 +S L+ + + + G A+ Sbjct: 255 ----AAPTGLLSGLMRKSSGAGTEASLDGFAAL 283 >gi|312115016|ref|YP_004012612.1| peptidase S49 [Rhodomicrobium vannielii ATCC 17100] gi|311220145|gb|ADP71513.1| peptidase S49 [Rhodomicrobium vannielii ATCC 17100] Length = 307 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 62/285 (21%), Positives = 112/285 (39%), Gaps = 26/285 (9%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSS 75 + + + + + G I + L ++R A+I+ ++S Sbjct: 25 IFPGNLFSSSRTTIPVVRLSGAIGAASPLRQGLTLSGCATALDRAFAAKG-PAVILQINS 83 Query: 76 PGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 PGGS I+ I +K K V ++AAS GY+I+CA++ I A +S+VGSIG Sbjct: 84 PGGSPVQSRLIYDRIVALKEEHDKKVYAFCEDVAASGGYMIACAADEIYADGSSIVGSIG 143 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V+ + KLG+ + S K + PF P+ + ++ + + F+ LV Sbjct: 144 VISAGFGFVHLIHKLGIDRRVYTSGENKMQLDPFRPEKPEEISRLKRLQAIVHEDFIALV 203 Query: 194 SESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 ESR + L G W G +A ++GLID + ++K Sbjct: 204 KESRGDRIANSGDNLFTGEFWAGRQALELGLIDGIIDL-----RAKMRSEYGDKVRLKLI 258 Query: 253 NPPKNYWFCDLK--------NLSISSLLEDTIPLMKQTKVQGLWA 289 + + ++ + IS L+ + + +WA Sbjct: 259 STERGFFRRKAGVGVSVSGTGMGISFAQGFADDLISALEERAIWA 303 >gi|115526406|ref|YP_783317.1| peptidase S49 [Rhodopseudomonas palustris BisA53] gi|115520353|gb|ABJ08337.1| peptidase S49 [Rhodopseudomonas palustris BisA53] Length = 300 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 64/267 (23%), Positives = 113/267 (42%), Gaps = 17/267 (6%) Query: 36 PHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 P V + + G I L +ER A A+ ++++SPGGS I Sbjct: 28 PVVPVVRLSGVIGAVTPLRPGLSLAGLARTLERAFAVPHAKAVALAINSPGGSPVQSRLI 87 Query: 87 FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + I+++ K PVI V ++AAS GY+++CA + I +S++GSIGV+ Sbjct: 88 YLRIRQLAAEKKLPVIAFVEDVAASGGYMLACAGDEIYCDPSSILGSIGVVGGTFGFPEL 147 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K+GV + + KA+ PF +P V ++ + + F+ LV +SR I Sbjct: 148 LKKIGVERRIYTAGEHKAQLDPFLPEDPDDVARVKALQREIHAIFIALVKDSRGIRLKGD 207 Query: 205 L-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L G W G + +GL D +G + ++ + V + PP Sbjct: 208 EGKLFSGEYWAGDSSIALGLADGIGDLRSILRTRFGDKVLTPVV-----APPTGMLAGLF 262 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWAV 290 + ++ + ++ Q + A+ Sbjct: 263 NRRAAATSMLGSVDAAADWPDQVISAL 289 >gi|302035495|ref|YP_003795817.1| putative phage minor capsid protein C [Candidatus Nitrospira defluvii] gi|300603559|emb|CBK39889.1| putative Phage minor capsid protein C [Candidatus Nitrospira defluvii] Length = 404 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 14/221 (6%) Query: 30 HVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSP 76 +A + I G + Q++ +I+ D + A+++ + SP Sbjct: 50 SPPVAGGSIAVLPIYGTLVRRTVGLEAASGLTSYQDIAAQIDTAIADPAVAAIVLDIDSP 109 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GG + + ++ KPV ++MA SA Y I A++ T VGSIGV+ Sbjct: 110 GGESGGVFDLADRVRAAAQVKPVWALANDMAYSAAYAIGSAASRFFVTRTGGVGSIGVIA 169 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + + GV +V + K + +P ++ +A ++ VD Y FV V+ Sbjct: 170 MHADQSVRDAQDGVRYTTVFAGARKNDLNPHEPISDEAHAFLKSEVDRIYGLFVDTVASH 229 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 R++ + G ++ G +A GL D VG ++V L Sbjct: 230 RSLSSEAVRATEAG-VFFGNDAVAAGLADAVGNFDDVLNEL 269 >gi|16081247|ref|NP_393553.1| protease (pspA) related protein [Thermoplasma acidophilum DSM 1728] gi|10639220|emb|CAC11222.1| protease (pspA) related protein [Thermoplasma acidophilum] Length = 230 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 4/230 (1%) Query: 37 HVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 ++ R I G I + S L++ +S GG A A + +F I+K++ Sbjct: 2 YILRTRIEGTITQQLYRSYYPIFSFAENKRSVAGLVLVFNSGGGDAVASQLMFEMIRKIR 61 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 +KPV + + + AS Y IS S+ I + +TSL+GSIGV+ PY+KP LDK+GV +K Sbjct: 62 KKKPVYSFIQGICASGAYWISAGSSKIYSLDTSLIGSIGVISMIPYIKPLLDKIGVEMKI 121 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 K K S + E + + + V++ Y F V RNIP DK ++ G+I++ Sbjct: 122 YKVGKYKDMLSSYREPSDEENEHYMRVLNDVYRKFRDSVMTERNIPEDKMEDIAQGQIFS 181 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 + A + LID +G + + +Y + K +D P + + L Sbjct: 182 PSMAMENRLIDGIGTMDSMMDDMYRQLGRK--YKTRDILPRRPWIMRFLG 229 >gi|110667987|ref|YP_657798.1| signal peptide peptidase [Haloquadratum walsbyi DSM 16790] gi|109625734|emb|CAJ52167.1| probable signal peptide peptidase [Haloquadratum walsbyi DSM 16790] Length = 319 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 69/260 (26%), Positives = 121/260 (46%), Gaps = 20/260 (7%) Query: 21 TVVYFSWSSHVEDNSPHVARIAIRGQI---------------EDSQELIERIERISRDDS 65 V + + +VA++ I G I + +++ERIE DD+ Sbjct: 37 IVAQLTRGRLGDAEEYNVAKVIISGPIQRDRGRPSPLSASGASAADDIVERIEDADDDDA 96 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 AL+V L++PGG + I RA ++ P I + AS GY I+ + + A + Sbjct: 97 IEALLVELNTPGGEVLPSDDIRRA--AIEFDGPTIAYATDTCASGGYWIASGCDEMWARD 154 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 SL+GSIGV+ P DKLG+S + + K P E+ + +Q +VD Sbjct: 155 VSLIGSIGVVGSRPNASGLADKLGISYEQFTAGEYKDAGVPLREIEDGEREYLQSIVDGY 214 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y FV VSE R++ ++ ++ RI+ G +A ++GLID +G +++V + L + Sbjct: 215 YDQFVETVSEGRDMDPEQIRD-TEARIYLGNDALEIGLIDELGTEDDVKDRIENL--IDA 271 Query: 246 IRKIKDWNPPKNYWFCDLKN 265 +I+++ P ++ Sbjct: 272 EPEIQEFKPNRSLAERLSIG 291 >gi|190890590|ref|YP_001977132.1| peptidase [Rhizobium etli CIAT 652] gi|190695869|gb|ACE89954.1| peptidase protein [Rhizobium etli CIAT 652] gi|327192814|gb|EGE59741.1| peptidase protein [Rhizobium etli CNPAF512] Length = 286 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 61/287 (21%), Positives = 117/287 (40%), Gaps = 21/287 (7%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS----------QELIERIERISRDDSATA 68 + + + + ++G I + +E+ A A Sbjct: 1 MAGFLRKLLPKRFRKDGVTIPVVRLQGAIISGGGQFRPTLNLANVAPVLEKAFAMKDAPA 60 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 + ++++SPGGS IF I+++ + +K V+ V ++AAS GY+I+ A + I+A T Sbjct: 61 VAIAINSPGGSPVQSRLIFTRIRELAREKKKKVLIFVEDVAASGGYMIALAGDEIIADAT 120 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 S+VGSIGV+ L K+GV + + K PF K ++ ++ + + Sbjct: 121 SIVGSIGVVSGGFGFPELLKKIGVERRVYTAGENKVILDPFQPEKEKDIEYLKSLQLEIH 180 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 F+ +V E R + G W+G ++GLID +G + + Y Sbjct: 181 QVFIAMVRERRAGKLKDDATVFSGLFWSGTRGLELGLIDGLGDMRQELKRRYGQK----- 235 Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLED----TIPLMKQTKVQGLWA 289 K++ + + +S SL L++ + + LW+ Sbjct: 236 TKLELVTASRGLLGRRIPGVSPVSLEGAGSSLATGLVEAAEERALWS 282 >gi|269468535|gb|EEZ80189.1| periplasmic serine protease, ClpP class [uncultured SUP05 cluster bacterium] Length = 320 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 58/297 (19%), Positives = 123/297 (41%), Gaps = 22/297 (7%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHV-------EDNSPHVARIAIRGQI-----EDSQELI 54 + + +L + + + + SP A + + G I ++ + + Sbjct: 30 RWRMVLTLLFVGYFGFISYLSIEQSDLLEEVLKKESPFAAEVVLSGTIQTSGEINADDAL 89 Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGY 112 E + + ++ A+I+ L+SPGGS I++ I ++ ++ K + + ++ AS Y Sbjct: 90 ELLNDAFKAKNSKAVILRLNSPGGSPVQSSQIYQGILRLKKQHNKKLYVVIDDVCASGCY 149 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 I+ +++ I A E+S+VGSIGV+ + KLG+ + + K FS+ + Sbjct: 150 YIAASADAIYADESSIVGSIGVVISSFGAVEAIKKLGIERRLYTAGKHKGLLDAFSDEDK 209 Query: 173 KAV-QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 A+ + ++++D S+ F+ + +R L G IW G +A+K+GLID + + Sbjct: 210 TAIVHIKKNILDKSHQNFINAIKATRGDKLSDHPDLFSGLIWLGKDAEKLGLIDGIADAD 269 Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 V + + + +L S + + + G Sbjct: 270 YVASEIIG-------VDARVIYEKEKTLLEELTEASAKGIALVISNQLISQETIGFL 319 >gi|83309474|ref|YP_419738.1| periplasmic serine protease [Magnetospirillum magneticum AMB-1] gi|82944315|dbj|BAE49179.1| Periplasmic serine protease [Magnetospirillum magneticum AMB-1] Length = 410 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 61/269 (22%), Positives = 107/269 (39%), Gaps = 16/269 (5%) Query: 26 SWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVS 72 S VE +A I + G + ++ E IE + D A+++ Sbjct: 46 IPSDDVEVTPDGIAIIPVVGTLVARSGYLGAASGLTAYSDIAETIEAAATDPGIRAILLD 105 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + S GG + IQ ++++ KP+ E A SA Y I+C ++ + +T VG Sbjct: 106 VDSSGGEVGGLFDLVDHIQAIRSQCGKPIWAVADEAALSAAYAIACTADRLYVTQTGEVG 165 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ + + G++ V + K + +P ++ A +Q VD+ Y F Sbjct: 166 SIGVVAVHRDESGADAQAGLAWTFVHAGAAKVDGNPHQPLSDSARAALQADVDALYGKFA 225 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 LV+E R + D + ++ G +A GL D VG + L A S+R Sbjct: 226 TLVAERRRLSPDAVRAT-EAVVYRGDQAVAAGLADKVGTLRQALADLGASLTRPSVRTPV 284 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 P + ++ I+ T + Sbjct: 285 LSRPKETTMSEQTGDIPINETERSTPGAI 313 >gi|306842302|ref|ZP_07474963.1| Clp protease [Brucella sp. BO2] gi|306287581|gb|EFM59035.1| Clp protease [Brucella sp. BO2] Length = 255 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 108/243 (44%), Gaps = 14/243 (5%) Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLI 114 +E+ D A A+ +S++SPGG+ I+R I+ + +++K V V ++AAS GY+I Sbjct: 14 LEKAFADKHAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMI 73 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A + I+A +S+VGSIGV+ L K+GV + + K PF + Sbjct: 74 ALAGDEIIADPSSIVGSIGVVSASFGFPELLKKIGVERRVHTAGSNKVTLDPFQPEKAED 133 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 ++ ++ + + F+ +V E R L G WTG A +GLID +G Sbjct: 134 IERLKALQLEIHATFIDMVKERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLGDMRSFL 193 Query: 235 QSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW------ 288 + Y K+K P + L + ++S + + GL Sbjct: 194 RKTYG-----DKVKLKLIQPQRGLLGRKLPGIGMNSGSVEPAQIAAHLG-DGLLCVAEEK 247 Query: 289 AVW 291 A+W Sbjct: 248 AIW 250 >gi|209548133|ref|YP_002280050.1| peptidase S49 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533889|gb|ACI53824.1| peptidase S49 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 286 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 58/267 (21%), Positives = 113/267 (42%), Gaps = 17/267 (6%) Query: 37 HVARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + + ++G I + +E+ A A+ ++++SPGGS I Sbjct: 19 TIPVVRLQGPIVSGGGPFRPALNLANVAPVLEKAFAMKDAPAVAITINSPGGSPVQSRLI 78 Query: 87 FRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 F I+++ + +K V+ V ++AAS GY+I+ A + I+A TS+VGSIGV+ Sbjct: 79 FTRIRELAREKQKKVLVFVEDVAASGGYMIALAGDEIIADSTSIVGSIGVVSGGFGFPEL 138 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K+GV + + K PF K ++ ++ + + F+ +V E R Sbjct: 139 LKKIGVERRVYTAGENKVILDPFQPEKEKDIEYLKSLQLEIHQVFISMVRERRAGKLRDD 198 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP--PKNYWFCD 262 + G W+G ++GL+D +G ++ Q L ++ ++ Sbjct: 199 AAVFSGLFWSGTRGLELGLVDGLG---DMRQELKRRYGQKTKLELVAAGRGLFGRRVPGV 255 Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWA 289 S+ L++ + + LW+ Sbjct: 256 SPVSLESAASGLATGLVEAAEERALWS 282 >gi|218682938|ref|ZP_03530539.1| putative peptidase [Rhizobium etli CIAT 894] Length = 286 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 59/269 (21%), Positives = 116/269 (43%), Gaps = 21/269 (7%) Query: 37 HVARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + + ++G I + +E+ A A+ ++++SPGGS I Sbjct: 19 TIPVVRLQGAIVSGGGQFRPALNLANVSPVLEKAFAMKDAPAVAITINSPGGSPVQSRLI 78 Query: 87 FRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 F I+++ + +K V+ V ++AAS GY+I+ A + I+A TS+VGSIGV+ Sbjct: 79 FTRIRELAREKQKKVLVFVEDVAASGGYMIALAGDEIIADATSIVGSIGVVSGGFGFPEL 138 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K+GV + + K PF K ++ ++ + + F+ +V E R Sbjct: 139 LKKIGVERRVYTAGENKVILDPFQPEKEKDIEYLKSLQLEIHQVFIAMVRERRAGKLKDD 198 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 + G W+G ++GL+D +G + + Y K++ + + + Sbjct: 199 AAVFSGLFWSGTRGLELGLVDGLGDMRQELKRRYGQK-----TKLELVTAGRGLFGRRIP 253 Query: 265 NLSI----SSLLEDTIPLMKQTKVQGLWA 289 +S S+ L++ + + LW+ Sbjct: 254 GVSPVTLESAASGLATGLVEAAEERALWS 282 >gi|27377645|ref|NP_769174.1| proteinase [Bradyrhizobium japonicum USDA 110] gi|27350790|dbj|BAC47799.1| proteinase [Bradyrhizobium japonicum USDA 110] Length = 302 Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 66/269 (24%), Positives = 114/269 (42%), Gaps = 19/269 (7%) Query: 38 VARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 V + + G I + +ER +A A+ + ++SPGGS I+ Sbjct: 32 VPVVRLSGVIGAVTPLRPGMTLAGVARVLERAFSMRNAKAVALVINSPGGSPVQSRQIYL 91 Query: 89 AIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 I+++ K PV+ V ++AAS GY+I+CA + I +S++GSIGV+ + + Sbjct: 92 RIKQLAAEKKLPVLVFVEDVAASGGYMIACAGDEIFCDPSSILGSIGVVGGSFGFQDAIK 151 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTL 205 +LG+ + + KA PF NP V ++ + + F+ LV ESR + Sbjct: 152 RLGIERRLYTAGAHKAMLDPFLPENPDDVAKLKALQREIHQIFIALVRESRGARLKGEDD 211 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD-----WNPPKNYWF 260 L G W GA + +GL D +G ++ Y V + K+ Sbjct: 212 TLFTGEYWAGASSIALGLADGIGDLRSTLRARYGEKVLTPVIAQPTGLLSGLLGRKSPGA 271 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 L L + L D + + + + +WA Sbjct: 272 GQLSALESMAGLPDEL--ISAVETRAIWA 298 >gi|126730495|ref|ZP_01746306.1| peptidase, family S49 [Sagittula stellata E-37] gi|126709228|gb|EBA08283.1| peptidase, family S49 [Sagittula stellata E-37] Length = 265 Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 101/250 (40%), Gaps = 15/250 (6%) Query: 33 DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + P V+ + ++G I + +E+ R A+ + ++SPGGS Sbjct: 9 KSRPRVSVVRLQGAISVPARGNLSDRTAAALLEKAFRSKP-DAVALEINSPGGSPVQSSL 67 Query: 86 IFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I I+++ + + V ++AAS GY I+ A++ I A +S++GSIGV+ Sbjct: 68 IGARIRRLSEQHNIPVYAFVEDVAASGGYWIASAADEIWADASSILGSIGVISSGFGAHV 127 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + G+ + + K+ PF + V + ++ + F+ + R Sbjct: 128 FLQRQGIERRVHTAGKSKSMMDPFRPETEEDVARLNRLLGQLHDTFINQIRARRGEKLAS 187 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L G IW G A GL D +G V + + + K + + + Sbjct: 188 NPDLFTGEIWVGQAAVDQGLADGIGHLVPVMKQRFG-----DKVRFKRYEAKRPFLPRLG 242 Query: 264 KNLSISSLLE 273 ++ +L E Sbjct: 243 TQIAQGALSE 252 >gi|209886071|ref|YP_002289928.1| peptidase S49 [Oligotropha carboxidovorans OM5] gi|209874267|gb|ACI94063.1| peptidase S49 [Oligotropha carboxidovorans OM5] Length = 297 Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 14/268 (5%) Query: 36 PHVARIAIRGQIEDSQELI---------ERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 P V + + G I L + +++ A A+ + ++SPGGS I Sbjct: 26 PVVPVVRLSGTIGAVTPLRPGLTLAGVSKTLDKAFETKRAQAVALVINSPGGSPVQSRQI 85 Query: 87 FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + I+++ K PV+ V ++AAS GY+I+CA++ I +S++GS+GV+ + F Sbjct: 86 YTRIRQLAAAKGIPVLAFVEDVAASGGYMIACAADEIFCDPSSILGSVGVIGGTFGFQDF 145 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + + G+ + S K+ PF NP V ++ + + F+ LV SR Sbjct: 146 IKRFGIERRIYTSGEHKSSLDPFLPENPDDVARLKAIQRDIHDDFIALVKRSRGARLKGE 205 Query: 205 LV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L G W G + ++GL D +G V ++ + V + K Sbjct: 206 EAYLFSGEYWAGNRSIELGLADAIGDLRGVLRARFGETVRMPVIAPKSGLLANLSGRKPG 265 Query: 264 KNLSISSLLEDTIP--LMKQTKVQGLWA 289 I++ L + L+ + + LWA Sbjct: 266 AGAMIAAGLGAGLGDDLISAIEARALWA 293 >gi|158422526|ref|YP_001523818.1| periplasmic serine protease [Azorhizobium caulinodans ORS 571] gi|158329415|dbj|BAF86900.1| periplasmic serine protease [Azorhizobium caulinodans ORS 571] Length = 296 Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 108/269 (40%), Gaps = 20/269 (7%) Query: 38 VARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 V + + G I + ++R A A+ + ++SPGGS IF+ Sbjct: 28 VPVVRLSGAIGMNSPFRQSLTLAATARLLDRAFAVKRAPAVALVINSPGGSPVQSNLIFK 87 Query: 89 AIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 I+ + + K V V ++AAS GY+++CA++ I A +S+VGSIGV+ L Sbjct: 88 RIRALAEEKNKRVFAFVEDVAASGGYMLACAADEIYADPSSIVGSIGVVSAGFGFNDMLS 147 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTL 205 ++GV + + K PF + V + + + F LV R + Sbjct: 148 RIGVERRVHTAGTRKVMLDPFQPERAEDVDRLLAIQREVHASFRDLVRSRRGALLKGEED 207 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L G W GA+A +GLID +G V + + + + P N++ Sbjct: 208 DLFSGEFWVGAQALPMGLIDGLGDLRSVLRERFG-----TDVRTPLIAPSGNWFTRRANG 262 Query: 266 LSISSLLEDTIPLMKQTKVQGL---WAVW 291 + L+ I + + A+W Sbjct: 263 IGAQIGLDGGIGAGFAQGLADVAEERALW 291 >gi|209964969|ref|YP_002297884.1| proteinase SohB, putative [Rhodospirillum centenum SW] gi|209958435|gb|ACI99071.1| proteinase SohB, putative [Rhodospirillum centenum SW] Length = 291 Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 66/280 (23%), Positives = 110/280 (39%), Gaps = 24/280 (8%) Query: 31 VEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAY 81 + P V+ + + G I +ER A+ + ++SPGGS Sbjct: 14 GQTPPPIVSVVRLSGIIGGVGGFRPGLTIAATAPLLERAFAPKDQVAVALIINSPGGSPV 73 Query: 82 AGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 I I+ + K PVI V ++AAS GY ++CA++ IVA +S+VGSIGV+ + Sbjct: 74 QSALIGGRIRALAEEKKLPVIAFVEDVAASGGYWLACAADEIVADPSSVVGSIGVVSRGF 133 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 L +LG+ + S K PF + V+ ++ + + + F V R Sbjct: 134 GFPEALRRLGIERRVHTSGTNKNMLDPFQPERAEDVERLKSLQEEVHESFKDWVRRRRGP 193 Query: 200 PYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 L G WTG +GL+D +G V + Y + K++ ++ Sbjct: 194 KLTVPEADLFTGEFWTGTRGLTLGLVDRLGDARTVLRERYG-----TEVKLRMVGQRRSL 248 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA------VWN 292 + S S L + L GL + +W Sbjct: 249 FQRLGGGESRLSGLPASADLGAGIAA-GLLSAAEERALWQ 287 >gi|157825673|ref|YP_001493393.1| Signal peptide peptidase SppA [Rickettsia akari str. Hartford] gi|157799631|gb|ABV74885.1| Signal peptide peptidase SppA [Rickettsia akari str. Hartford] Length = 304 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 65/263 (24%), Positives = 121/263 (46%), Gaps = 13/263 (4%) Query: 27 WSSHVEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPG 77 ++S D+ +A + + G I + L E IE+ + AL + ++SPG Sbjct: 30 FASVFGDSKEVIAVLRLSGVIGKVSTMQSGLTLESLNELIEKAFKIKKLKALCLIINSPG 89 Query: 78 GSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 GS E I + I+ + +N+ + + + +MAAS GYL++C+ + I A+ +S++GSIGV+ Sbjct: 90 GSPVQSELIAKRIRDLAKENKIKIYSFIEDMAASGGYLLACSGDWIYASYSSVIGSIGVV 149 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 ++KLG+ + KA PF +N + +++++D+ Y FV V Sbjct: 150 SSGFGFHEAINKLGIERRVYTEGKNKAILDPFKPINKEDLKIIKDLQKHVYEHFVEYVKT 209 Query: 196 SRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD-WN 253 R + + +G W G A GLID +G + + + + K W Sbjct: 210 RRVGKLTQQDEILFNGEFWAGQTALDYGLIDGIGDMYSIMKEKFGDNIKFQYLCAKQHWL 269 Query: 254 PPKNYWFCDLKNLSISSLLEDTI 276 K + + ++++ L D I Sbjct: 270 KKKLGMCSKILSDNLANSLIDAI 292 >gi|90420150|ref|ZP_01228058.1| putative peptidase, family S49 [Aurantimonas manganoxydans SI85-9A1] gi|90335484|gb|EAS49234.1| putative peptidase, family S49 [Aurantimonas manganoxydans SI85-9A1] Length = 291 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 110/272 (40%), Gaps = 23/272 (8%) Query: 38 VARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + + + G I + + A A+ + ++SPGGS I+ Sbjct: 20 IPVVRLSGMISSGGTALRPSLSLASAAPLLAKAFAHKKAPAVAIVINSPGGSPVQSRLIY 79 Query: 88 RAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + I+ + + K V+ V ++AAS GY+I+CA + I+A +S+VGSIGV+ + Sbjct: 80 QRIRDLAEEKDKQVLVFVEDVAASGGYMIACAGDEIIADPSSIVGSIGVVSGSFGFVEAI 139 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 KLG+ + + KA PF P+ V+ ++ + + F+ LV +SR Sbjct: 140 AKLGIERRVHTAGSNKATLDPFQPERPEDVEHLKSLQLEVHKTFIDLVKDSRGAKLADHD 199 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L G W+G ++GL+D +G ++ + V + + + + Sbjct: 200 DLFTGLFWSGLRGLELGLVDRLGDLRGTLRARFGKKVKLELVQA-----KRTLFGRPQPG 254 Query: 266 LSISSLLEDTIPLMKQTKVQGLW------AVW 291 + D + + + A+W Sbjct: 255 VHAGMAAGDGMAAIGAGFAREAMGVAEERALW 286 >gi|296395336|ref|YP_003660220.1| peptidase S49 [Segniliparus rotundus DSM 44985] gi|296182483|gb|ADG99389.1| peptidase S49 [Segniliparus rotundus DSM 44985] Length = 291 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 53/275 (19%), Positives = 108/275 (39%), Gaps = 21/275 (7%) Query: 30 HVEDNSPHVARIAIRGQI-----------EDSQELIERIERISRDDSATALIVSLSSPGG 78 + V+ + + G I ++Q L + A A+ + ++SPGG Sbjct: 19 RKKPAGKTVSVVRLEGVIRAGGGPFGRGALNAQNLEAPLVDAFSASEAVAVAIVINSPGG 78 Query: 79 SAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 S + I+++ + KPV+ ++AAS GY ++CA++ I + +++GSIGV+ Sbjct: 79 SPAQSALVGDRIRQLSAKHEKPVLAFCEDVAASGGYWLACAADEIFVSPGTVIGSIGVVS 138 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + ++KLG+ + + K PF + V + + + F+ V Sbjct: 139 SSFGLTEAIEKLGLERRVHAAGTNKVRLDPFLPEKEEDVSWLSGMQADIHQVFIDWVKTR 198 Query: 197 RNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 R K L + +W G A ++G+ D VG V + K + P Sbjct: 199 RGAKLAGKDDELFNADVWIGKRAVELGVADAVGSLHSVLAERF------PEAKPHEIKPK 252 Query: 256 KNYWFCDLKNLSISSLLEDTIPLMK-QTKVQGLWA 289 + S+ + + + + + +W+ Sbjct: 253 QQLLQRLGLTASVEDMTLRALDGVVCAVERRAMWS 287 >gi|294085840|ref|YP_003552600.1| peptidase S49 [Candidatus Puniceispirillum marinum IMCC1322] gi|292665415|gb|ADE40516.1| peptidase S49 [Candidatus Puniceispirillum marinum IMCC1322] Length = 280 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 102/252 (40%), Gaps = 18/252 (7%) Query: 33 DNSPHVARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGSAYA 82 P V + + G I S + + ++++ A A+ + ++SPGGS Sbjct: 12 KKKPVVPVVRLGGVIAASGSGMRRGISLETVEPQLKKAFSIKRAKAVALIINSPGGSPVQ 71 Query: 83 GEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 I R I+ + + PV+ ++AAS GY ++ +++ I A S++GSIGV+ Sbjct: 72 SSLIGRRIRDLAKRADVPVLAFCEDVAASGGYWLAASADEIYADPASIIGSIGVVSAGFG 131 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + K+GV + + K PF + V+ ++ + + F+ + R Sbjct: 132 FDKAIKKIGVDRRVHTAGESKMILDPFQPEQSEEVERLKALQAEIHTQFIAHIENRRGAK 191 Query: 201 YDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 L G WTG A K+GL+D VG + S + ++ P + Sbjct: 192 LKGDRAELFSGAFWTGETAVKLGLVDAVGEIRQTINSRFG-----DDTELMMIEPKRKLL 246 Query: 260 FCDLKNLSISSL 271 L NLS Sbjct: 247 PFGLTNLSGQMA 258 >gi|291060353|gb|ADD73088.1| signal peptide peptidase SppA, 67K type [Treponema pallidum subsp. pallidum str. Chicago] Length = 598 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 62/268 (23%), Positives = 113/268 (42%), Gaps = 14/268 (5%) Query: 35 SPHVARIAIRGQIED----------SQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 V I + G I S E+ ++ D A+++ + S GG +A E Sbjct: 316 QDQVGIIHLAGPIAAHRDTELGGTISDEVSALLDVAMSDPDIKAVVLRIDSGGGEVFASE 375 Query: 85 AIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I RA+ + K +KPVI + +AAS Y ++ A++ I A+ ++ GSIGVL P + Sbjct: 376 RIRRALARAKRRGKKPVIVSMGAIAASGAYWVASAADYIFASPYTITGSIGVLSVLPTFE 435 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 FL++ +PS + MQ V ++Y F+ +VS RN+ D Sbjct: 436 TFLERYAGITVDSVQVHGVRQPSLLRSGTAEDTARMQLDVMATYRTFLSVVSAGRNLTLD 495 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + +++GRI+ G +A +GL+D +GG +E + + + Sbjct: 496 RVAAVAEGRIYAGEDAVSLGLVDALGGLDEAVAHAAKESHCRQYS--VRVLKRSATYGEE 553 Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWAV 290 L + ++ ++ + L + Sbjct: 554 FLQSLWDVLQKRSLAFGERVIIGELLQL 581 Score = 63.1 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 36/265 (13%), Positives = 88/265 (33%), Gaps = 18/265 (6%) Query: 41 IAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE---AIFRAIQKVKNRK 97 + +G ++ + + + D ++ LS+ G + + A+ + K K Sbjct: 79 LNPKGSAILLSDITQALRNAATDRRIESVFFDLSNMSG--WTSGHFVEMESALSEYKKSK 136 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A Y I+ ++ I+ V G + + +K+GV V + Sbjct: 137 KPLYVFSTSYSLADYYIASFADEIILDPMGSVDLSGFYTETLFYGGMEEKIGVRWNVVHA 196 Query: 158 SPMKAE--PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT- 214 K + +P+ + Q V + ++ VS +R + +D R+ Sbjct: 197 GVYKGMAEIFSRKDFSPEVRRNYQSVFARLWQQYLSDVSRNRALEVQHLARYADRRLELL 256 Query: 215 -------GAEAKKVGLIDVVGGQEE---VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 A L+ V +E + L + + + + ++ ++ Sbjct: 257 QKYNGDGARTALAEKLVTRVCSYDEAGVALKFLKEDDYESAKNFVGLDDYNRDRAQRQVQ 316 Query: 265 NLSISSLLEDTIPLMKQTKVQGLWA 289 + L I + T++ G + Sbjct: 317 DQVGIIHLAGPIAAHRDTELGGTIS 341 >gi|148253845|ref|YP_001238430.1| putative serine protease SohB [Bradyrhizobium sp. BTAi1] gi|146406018|gb|ABQ34524.1| putative serine protease SohB [Bradyrhizobium sp. BTAi1] Length = 283 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 63/221 (28%), Positives = 105/221 (47%), Gaps = 12/221 (5%) Query: 34 NSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGE 84 +P V + + G I L + +ER +A A+ + ++SPGGS Sbjct: 11 GAPVVPVVRLSGVIGAVTPLRPGLTLAGVAKMLERAFAMRNAKAVALVINSPGGSPVQSR 70 Query: 85 AIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I+ I+++ K PV+ V ++AAS GY+I+CA + I +S++GSIGV+ ++ Sbjct: 71 QIYLRIRQLAAEKKLPVLVFVEDVAASGGYMIACAGDEIFCDPSSILGSIGVVSGSFGLQ 130 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 ++K+G+ + + KA PF NP AV ++ + + F+ LV ESRN Sbjct: 131 DLINKIGIERRLYTAGEHKAMLDPFLPENPDAVARLKKIQREIHALFISLVKESRNGRLK 190 Query: 203 KTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 L G W G A +GL D +G V ++ + V Sbjct: 191 SADDVLFTGEYWAGDTAVTLGLADGIGDLRAVLRARFGDKV 231 >gi|15639981|ref|NP_219434.1| protease IV (sppA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189026220|ref|YP_001933992.1| protease IV [Treponema pallidum subsp. pallidum SS14] gi|3323323|gb|AAC26585.1| protease IV (sppA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018795|gb|ACD71413.1| protease IV [Treponema pallidum subsp. pallidum SS14] Length = 598 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 62/268 (23%), Positives = 113/268 (42%), Gaps = 14/268 (5%) Query: 35 SPHVARIAIRGQIED----------SQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 V I + G I S E+ ++ D A+++ + S GG +A E Sbjct: 316 QDQVGIIHLAGPIAAHRDTELGGTISDEVSALLDVAMSDPDIKAVVLRIDSGGGEVFASE 375 Query: 85 AIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I RA+ + K +KPVI + +AAS Y ++ A++ I A+ ++ GSIGVL P + Sbjct: 376 RIRRALARAKRRGKKPVIVSMGAIAASGAYWVASAADYIFASPYTITGSIGVLSVLPTFE 435 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 FL++ +PS + MQ V ++Y F+ +VS RN+ D Sbjct: 436 TFLERYAGITVDSVQVHGVRQPSLLRSGTAEDTARMQLDVMATYRTFLSVVSAGRNLTLD 495 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + +++GRI+ G +A +GL+D +GG +E + + + Sbjct: 496 RVAAVAEGRIYAGEDAVSLGLVDALGGLDEAVAHAAKESHCRQYS--VRVLKRSATYGEE 553 Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWAV 290 L + ++ ++ + L + Sbjct: 554 FLQSLWDVLQKRSLAFGERVIIGELLQL 581 Score = 62.3 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 36/265 (13%), Positives = 88/265 (33%), Gaps = 18/265 (6%) Query: 41 IAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE---AIFRAIQKVKNRK 97 + +G ++ + + + D ++ LS+ G + + A+ + K K Sbjct: 79 LNPKGSAILLSDITQALRNAATDRRIESVFFDLSNMSG--WTSGHFVEMESALSEYKKSK 136 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A Y I+ ++ I+ V G + + +K+GV V + Sbjct: 137 KPLYVFSTSYSLADYYIASFADEIILDPMGSVDLSGFYTETLFYXGMEEKIGVRWNXVHA 196 Query: 158 SPMKAE--PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT- 214 K + +P+ + Q V + ++ VS +R + +D R+ Sbjct: 197 GVYKGMAEIFSRKDFSPEVRRNYQSVFARLWQQYLSDVSRNRALEVQHLARYADRRLELL 256 Query: 215 -------GAEAKKVGLIDVVGGQEE---VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 A L+ V +E + L + + + + ++ ++ Sbjct: 257 QKYNGDGARTALAEKLVTRVCSYDEAGVALKFLKEDDYESAKNFVGLDDYNRDRAQRQVQ 316 Query: 265 NLSISSLLEDTIPLMKQTKVQGLWA 289 + L I + T++ G + Sbjct: 317 DQVGIIHLAGPIAAHRDTELGGTIS 341 >gi|319784754|ref|YP_004144230.1| peptidase S49 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170642|gb|ADV14180.1| peptidase S49 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 287 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 62/266 (23%), Positives = 108/266 (40%), Gaps = 14/266 (5%) Query: 37 HVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + I + G I IE+ D A A+ +S++SPGGS I Sbjct: 19 TIPVIRLHGTIMAGGGQFRPSLSLASTAGLIEKAFSYD-APAVAISINSPGGSPVQSRLI 77 Query: 87 FRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 F+ I+ + K + V ++AAS GY+I+ A + I A +S+VGSIGV+ Sbjct: 78 FKRIRDLATEKNRKVLVFVEDVAASGGYMIAVAGDEIFADPSSIVGSIGVVSASFGFPEL 137 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + K+G+ + + KA PF + V+ ++ + + F+ LV E R Sbjct: 138 MKKIGIERRVHTAGQNKAVLDPFKPEKKEDVERLKALQLEVHGTFIDLVKERRGSKLKDD 197 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 L G WTG + ++GL+D +G V ++ + + + F Sbjct: 198 PDLFTGLFWTGIKGLELGLVDALGDMRTVLKTRFGAKTQLRLITAPRGFLSRFGLFGSSG 257 Query: 265 NLSISSLLEDTI-PLMKQTKVQGLWA 289 S + L+ + + LW+ Sbjct: 258 GFSAPDIAAAAASGLIDAAEERALWS 283 >gi|325292019|ref|YP_004277883.1| protease SohB [Agrobacterium sp. H13-3] gi|325059872|gb|ADY63563.1| protease SohB [Agrobacterium sp. H13-3] Length = 288 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 61/285 (21%), Positives = 112/285 (39%), Gaps = 15/285 (5%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATAL 69 + + + + + + G I + +E+ A A+ Sbjct: 1 MGFLKYLVPKRFRKKELVIPVVRMHGAIMAGGNQFRPALNLASYAPLLEKAFAVKDAPAV 60 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +S++SPGGS I+ I+++ + K V+ V ++AAS GY+I+ A + I+A TS Sbjct: 61 AISVNSPGGSPVQARMIYNRIRQLAEEKDKKVLIFVEDVAASGGYMIALAGDEIIADPTS 120 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 +VGSIGV+ L K+GV + + K PF ++ ++ + ++ Sbjct: 121 IVGSIGVVSGGFGFPEMLKKIGVERRVYTAGENKVILDPFQPEKEGDIEYLKSLQVEIHN 180 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA-LGVDQSI 246 F+ +V R + G WTG +GLID +G EV + Y Q + Sbjct: 181 VFIDMVKMRRGAKLKGDETVFSGLFWTGMRGLDLGLIDGLGDMREVLRRRYGTKVKLQLV 240 Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 + K L+ L + + + + A+W Sbjct: 241 TGGRSLFGKKVPGVNAALGLNAERLAAGAVSGLAEVAEE--KALW 283 >gi|89070172|ref|ZP_01157500.1| peptidase, family S49 [Oceanicola granulosus HTCC2516] gi|89044188|gb|EAR50339.1| peptidase, family S49 [Oceanicola granulosus HTCC2516] Length = 263 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 108/235 (45%), Gaps = 14/235 (5%) Query: 36 PHVARIAIRGQIE------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 P V + ++G I + +E+ R A+ + +SSPGGS I Sbjct: 12 PKVCVVQLQGPIGIGPRGLSDATVAPLLEKAFRAKP-DAVALQISSPGGSPVQSSLIGGR 70 Query: 90 IQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 I+++ + + PV+ V ++AAS GY ++ A++ I A +S+VGSIGV+ + F+ + Sbjct: 71 IRRLADERKVPVVAFVEDVAASGGYWLAAAADEIYADASSVVGSIGVISAGFGAQEFIAR 130 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 G+ + S K+ PF P+ V+ ++ +++ + FV V+ R + L Sbjct: 131 HGIERRIHTSGRSKSFLDPFRPEKPEDVERLERLLEEIHEHFVAHVTSRRGAKLAEGADL 190 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 G WTGA AK++GL+D +G + K + + ++ + Sbjct: 191 FTGEFWTGARAKELGLVDGIGHL---VPEMKRRFG--PKTKFRKFGQKRSLFQRL 240 >gi|309780992|ref|ZP_07675731.1| prophage LambdaMc01, peptidase, U7 family [Ralstonia sp. 5_7_47FAA] gi|330824611|ref|YP_004387914.1| peptidase S49 [Alicycliphilus denitrificans K601] gi|308920295|gb|EFP65953.1| prophage LambdaMc01, peptidase, U7 family [Ralstonia sp. 5_7_47FAA] gi|329309983|gb|AEB84398.1| peptidase S49 [Alicycliphilus denitrificans K601] Length = 413 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 102/252 (40%), Gaps = 15/252 (5%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE------------ 48 ++ +L + R + L+ + +V Y + S VA I I G + Sbjct: 23 LDIILSVLGAR-IGLADLAASVGYTPAARAPGPPSGKVAVIPIHGTLVRRTSGLEAESGL 81 Query: 49 -DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ A+++ + SPGG + + I+ KPV ++MA Sbjct: 82 ASYTGIAAQLDAALTSPEVAAILLDIDSPGGESGGVFDLADRIRVASQVKPVWAVANDMA 141 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 SA Y ++ A+ + A T VGSIGV+ + K GV +V + K + +P Sbjct: 142 FSAAYALASAATRVFVARTGGVGSIGVIAMHIDQSVKDAKDGVRYTAVFAGERKNDLNPH 201 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 ++ A +++ VD Y FV V+ R + D G + G +A GL D V Sbjct: 202 EPLSDAAHAVLKAEVDRVYELFVETVARHRGLDADAVRATEAGLFF-GPDAVATGLADAV 260 Query: 228 GGQEEVWQSLYA 239 G ++ L Sbjct: 261 GSLDDALTQLTQ 272 >gi|85714241|ref|ZP_01045229.1| peptidase S49 [Nitrobacter sp. Nb-311A] gi|85698688|gb|EAQ36557.1| peptidase S49 [Nitrobacter sp. Nb-311A] Length = 306 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 64/265 (24%), Positives = 109/265 (41%), Gaps = 18/265 (6%) Query: 38 VARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 V + + G I L + +ER D+A A+ + ++SPGGS I+ Sbjct: 37 VPVVRLSGVIGAVTPLRPGMMLAGVAKTLERAFAVDNAKAVALVVNSPGGSPVQSRQIYL 96 Query: 89 AIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 I+++ K PV+ V ++AAS GY+I+CA + I +S++GSIGV+ + Sbjct: 97 RIRQLSREKEIPVLVFVEDVAASGGYMIACAGDEIFCDPSSIMGSIGVVGGSFGFTELMR 156 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 K+GV + + KA PF NP V ++ + + F+ LV SR T Sbjct: 157 KIGVERRLYTAGEHKATLDPFLPENPDDVARLKAIQREIHATFIELVKASRGERLKGTDD 216 Query: 207 -LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L G W G + +GL D +G ++ + V + P L Sbjct: 217 LLFTGEYWAGERSVALGLADAIGDLRSTLRARFGEKVATPVIA------PSTGLLSGLLG 270 Query: 266 LSISSLLEDTIPLMKQTKVQGLWAV 290 + ++ M + + A+ Sbjct: 271 RKAGAGTLTSLDGMAAMPDELISAL 295 >gi|320664993|gb|EFX32107.1| peptidase S49 [Escherichia coli O157:H7 str. LSU-61] Length = 439 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 106/259 (40%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I +++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIALLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SA L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSACQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 318 VSATASQADVTDVVPATEG 336 >gi|320643596|gb|EFX12745.1| peptidase S49 [Escherichia coli O157:H- str. 493-89] gi|320648937|gb|EFX17541.1| peptidase S49 [Escherichia coli O157:H- str. H 2687] Length = 439 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 106/259 (40%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I +++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIALLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SA L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSACQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 318 VSATASQADVTDVVPATEG 336 >gi|331651533|ref|ZP_08352553.1| minor capsid protein C (GPC) [Escherichia coli M718] gi|331050806|gb|EGI22863.1| minor capsid protein C (GPC) [Escherichia coli M718] Length = 484 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 125 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 184 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 185 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 244 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 245 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 304 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 305 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 362 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 363 VSATASQADVTDVVPATEG 381 >gi|323942023|gb|EGB38201.1| peptidase S49 [Escherichia coli E482] Length = 362 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 67 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 246 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 304 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 305 VSATASQADVTDVVPATEG 323 >gi|323185917|gb|EFZ71274.1| minor capsid protein C [Escherichia coli 1357] Length = 419 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 60 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 119 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 120 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 179 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 180 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 239 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 240 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 297 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 298 VSATASQADVTDVVPATEG 316 >gi|315252463|gb|EFU32431.1| putative signal peptide peptidase SppA [Escherichia coli MS 85-1] Length = 426 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 67 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 246 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 304 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 305 VSATASQADVTDVVPATEG 323 >gi|307310890|ref|ZP_07590536.1| peptidase S49 [Escherichia coli W] gi|306909068|gb|EFN39564.1| peptidase S49 [Escherichia coli W] gi|315060844|gb|ADT75171.1| peptidase S49 [Escherichia coli W] gi|323378587|gb|ADX50855.1| peptidase S49 [Escherichia coli KO11] Length = 439 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 318 VSATASQADVTDVVPATEG 336 >gi|293413827|ref|ZP_06656476.1| capsid protein [Escherichia coli B185] gi|291433885|gb|EFF06858.1| capsid protein [Escherichia coli B185] Length = 439 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 318 VSATASQADVTDVVPATEG 336 >gi|218699885|ref|YP_002407514.1| minor capsid protein C from bacteriophage origin [Escherichia coli IAI39] gi|218369871|emb|CAR17645.1| Minor capsid protein C from bacteriophage origin [Escherichia coli IAI39] Length = 488 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 125 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 184 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 185 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 244 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 245 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 304 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 305 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 362 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 363 VSATASQADVTDVVPATEG 381 >gi|26249012|ref|NP_755052.1| putative capsid protein of prophage [Escherichia coli CFT073] gi|26109419|gb|AAN81622.1|AE016765_24 Putative capsid protein of prophage [Escherichia coli CFT073] Length = 477 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 118 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 177 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 178 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 237 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 238 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 297 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 298 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 355 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 356 VSATASQADVTDVVPATEG 374 >gi|193067665|ref|ZP_03048632.1| minor capsid protein C [Escherichia coli E110019] gi|192959077|gb|EDV89513.1| minor capsid protein C [Escherichia coli E110019] Length = 439 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 318 VSATASQADVTDVVPATEG 336 >gi|309701424|emb|CBJ00728.1| Minor capsid protein [Escherichia coli ETEC H10407] Length = 439 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I ++++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARMRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 318 VSATASQTDVTDVVPATEG 336 >gi|331682243|ref|ZP_08382862.1| minor capsid protein C (GPC) [Escherichia coli H299] gi|331079874|gb|EGI51053.1| minor capsid protein C (GPC) [Escherichia coli H299] Length = 439 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQYRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 318 VSATASQADVTDVVPATEG 336 >gi|111225578|ref|YP_716372.1| endopeptidase IV [Frankia alni ACN14a] gi|111153110|emb|CAJ64857.1| Endopeptidase IV (Protease IV, signal peptide peptidase) [Frankia alni ACN14a] Length = 772 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 2/210 (0%) Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNI 120 RD+ A + ++SPGGS A + + R ++ + + + ++AAS GY +S A+++ Sbjct: 459 RDEDVAAAVFRVNSPGGSYVASDLVRREAERFRASGRPLVVSMGDVAASGGYFVSLAADL 518 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 IVA +L GSIGV V+ LDK+GV +V SP + +++ Sbjct: 519 IVANPGTLTGSIGVFAGKQVVRELLDKVGVGFGAVAEGEHALMMSPRRPFTVGEREKLEE 578 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +D Y FV V+ +R + D+ L+ GR+WTGA+A GL+D +GG + + + Sbjct: 579 FLDRVYADFVDKVAAARRLTRDQVHELARGRVWTGADAHAYGLVDELGGLTDALRLAWTR 638 Query: 241 GVDQS-IRKIKDWNPPKNYWFCDLKNLSIS 269 P + S Sbjct: 639 AGLPEGETPRVRLAPRPSVLERVRTPKSSE 668 Score = 78.5 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 84/190 (44%), Gaps = 7/190 (3%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 ++L+E + + D + ++ + + G + I AI + + Sbjct: 54 RDLVEALRYATEDPRVSVVVAHIGAAGTPLARIQEIRAAIGDFRAAGGTAIAYADTFGEF 113 Query: 111 -----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 Y ++CA + I A + G G+ + P+++ LD+LGV+++ + K + Sbjct: 114 GGGTGPYYLACAFDEIWLAPSGDCGLTGLGMETPFLRGALDRLGVAVEIGQRYEYKNAVN 173 Query: 166 P--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 + P ++ + +++SS V +++ R +P D+ L D G+ A VGL Sbjct: 174 TLVERDFTPAHLEAVSRIIESSSEQVVAGIAQGRRMPADRVRRLIDLGPLAGSVALDVGL 233 Query: 224 IDVVGGQEEV 233 +D +G ++EV Sbjct: 234 VDRLGYRDEV 243 >gi|254438067|ref|ZP_05051561.1| peptidase, S49 (protease IV) family [Octadecabacter antarcticus 307] gi|198253513|gb|EDY77827.1| peptidase, S49 (protease IV) family [Octadecabacter antarcticus 307] Length = 262 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 20/259 (7%) Query: 33 DNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + PHVA I ++G I S + L + IE+ R A+ + +SSPGGS I Sbjct: 9 KSDPHVAVIRLQGTIASSGRSLNDRGLTDSIEKAFRSKP-KAVALEISSPGGSPVQSSLI 67 Query: 87 FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I+++ + K PV + V ++AAS GY ++ A + I S+VGSIGV+ + Sbjct: 68 CARIRRLADEKDIPVYSFVEDVAASGGYWLATAGDEIYVDRGSIVGSIGVITAGFGLTGT 127 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 LDK+G + + K+ PF P V+ ++ ++D + +F VS R Sbjct: 128 LDKIGAERRVYTAGKSKSMLDPFQAEKPADVKRLKGLLDDLHVFFKDHVSTRRAGKIVD- 186 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 L G IW G ++ VGL D +G + + K + + K + Sbjct: 187 QDLFTGDIWVGQKSIDVGLADHLGHLVPTMKDRFG-----DKTKFRRFGQKKPFLSRF-- 239 Query: 265 NLSISSLLEDTIPLMKQTK 283 + +++D + +++ Sbjct: 240 ---GAQIIDDAVGGIEERA 255 >gi|120610301|ref|YP_969979.1| serine peptidase [Acidovorax citrulli AAC00-1] gi|120588765|gb|ABM32205.1| protein C [Acidovorax citrulli AAC00-1] Length = 316 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 14/214 (6%) Query: 38 VARIAIRG-------------QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 VA I + G + + L I D + + + + SPGGS Sbjct: 76 VAVIPVHGVLVPRTANLEMCETMTSYEGLRRDIRAAINDPTIERIALDIDSPGGSVAGAF 135 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + I+ + +KP+ V+ M S GYLI+ A + IV + TS VGSIGV+ + Sbjct: 136 ELATDIRAMSAQKPITGVVNFMGYSGGYLIASACSEIVVSRTSGVGSIGVIASHMDRAAL 195 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 +KLGV + +V + K + +P ++ ++++++ D+V+ Y FV V+E R + Sbjct: 196 NEKLGVKVTTVFAGAHKNDLTPHEPISEQSLRVLTDLVNEGYEMFVSAVAEYRGMTAAAV 255 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 G + G A K GL D + ++ + Sbjct: 256 RATEAGL-YRGDAAIKAGLADRLQSPQDAIDGIA 288 >gi|312969556|ref|ZP_07783739.1| minor capsid C [Escherichia coli 1827-70] gi|310337841|gb|EFQ02930.1| minor capsid C [Escherichia coli 1827-70] Length = 439 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 318 VSATASQTDVTDVVPATEG 336 >gi|325497825|gb|EGC95684.1| capsid protein [Escherichia fergusonii ECD227] Length = 439 Score = 103 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRE-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D + + Sbjct: 318 VSATASQADVTDVVSATEG 336 >gi|323947947|gb|EGB43942.1| peptidase S49 [Escherichia coli H120] Length = 354 Score = 103 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 67 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 246 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 304 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 305 VSATASQADVTDVVPATEG 323 >gi|315252353|gb|EFU32321.1| putative signal peptide peptidase SppA [Escherichia coli MS 85-1] Length = 426 Score = 103 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 67 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 246 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 304 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 305 VSATASQADVTDVVPATEG 323 >gi|301307482|ref|ZP_07213470.1| putative signal peptide peptidase SppA [Escherichia coli MS 124-1] gi|300837352|gb|EFK65112.1| putative signal peptide peptidase SppA [Escherichia coli MS 124-1] Length = 445 Score = 103 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 86 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 145 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 146 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 205 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 206 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 265 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 266 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 323 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 324 VSATASQADVTDVVPATEG 342 >gi|300917751|ref|ZP_07134397.1| putative signal peptide peptidase SppA [Escherichia coli MS 115-1] gi|300415028|gb|EFJ98338.1| putative signal peptide peptidase SppA [Escherichia coli MS 115-1] Length = 426 Score = 103 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 67 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 246 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 304 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 305 VSATASQADVTDVVPATEG 323 >gi|294490182|gb|ADE88938.1| minor capsid protein C (GPC) [Escherichia coli IHE3034] Length = 439 Score = 103 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 318 VSATASQADVTDVVPATEG 336 >gi|218554104|ref|YP_002387017.1| Minor capsid protein C from bacteriophage origin [Escherichia coli IAI1] gi|218360872|emb|CAQ98442.2| Minor capsid protein C from bacteriophage origin [Escherichia coli IAI1] Length = 484 Score = 103 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 125 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 184 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 185 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 244 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 245 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 304 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 305 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 362 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 363 VSATASQADVTDVVPATEG 381 >gi|218553334|ref|YP_002386247.1| Minor capsid protein [Escherichia coli IAI1] gi|218360102|emb|CAQ97650.1| Minor capsid protein [Contains: Capsid assembly protein NU3] from bacteriophage origin [Escherichia coli IAI1] gi|323169838|gb|EFZ55494.1| minor capsid protein C [Escherichia coli LT-68] Length = 439 Score = 103 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 318 VSATASQADVTDVVPATEG 336 >gi|170769088|ref|ZP_02903541.1| minor capsid protein C (GPC) [Escherichia albertii TW07627] gi|170122160|gb|EDS91091.1| minor capsid protein C (GPC) [Escherichia albertii TW07627] Length = 439 Score = 103 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 318 VSATASQADVTDVVPATEG 336 >gi|193063327|ref|ZP_03044417.1| minor capsid protein C [Escherichia coli E22] gi|192930911|gb|EDV83515.1| minor capsid protein C [Escherichia coli E22] Length = 439 Score = 103 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 318 VSATASQADVTDVVPATEG 336 >gi|191166606|ref|ZP_03028435.1| minor capsid protein C [Escherichia coli B7A] gi|194427933|ref|ZP_03060478.1| minor capsid protein C [Escherichia coli B171] gi|260842764|ref|YP_003220542.1| putative head protein/prohead protease [Escherichia coli O103:H2 str. 12009] gi|190903411|gb|EDV63131.1| minor capsid protein C [Escherichia coli B7A] gi|194413908|gb|EDX30185.1| minor capsid protein C [Escherichia coli B171] gi|257757911|dbj|BAI29408.1| putative head protein/prohead protease [Escherichia coli O103:H2 str. 12009] Length = 439 Score = 103 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 318 VSATASQADVTDVVPATEG 336 >gi|320198084|gb|EFW72692.1| Head-tail preconnector protein GP5 [Escherichia coli EC4100B] Length = 439 Score = 103 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVCRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITIMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + +P M+ Sbjct: 318 VSATASQADVTGVVPAMEG 336 >gi|332343254|gb|AEE56588.1| minor capsid protein [Escherichia coli UMNK88] Length = 439 Score = 103 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSTYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 318 VSATASQADVTDVVPATEG 336 >gi|324014985|gb|EGB84204.1| putative signal peptide peptidase SppA [Escherichia coli MS 60-1] Length = 426 Score = 103 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 67 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRIFAQKVSAYTGLSVQ 246 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 304 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 305 VSATASQADVTDVVPATEG 323 >gi|110641352|ref|YP_669082.1| minor capsid protein C [Escherichia coli 536] gi|191173120|ref|ZP_03034653.1| minor capsid protein C [Escherichia coli F11] gi|110342944|gb|ABG69181.1| minor capsid protein C [Escherichia coli 536] gi|190906665|gb|EDV66271.1| minor capsid protein C [Escherichia coli F11] Length = 439 Score = 103 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRIFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 318 VSATASQADVTDVVPATEG 336 >gi|324116806|gb|EGC10720.1| peptidase S49 [Escherichia coli E1167] Length = 439 Score = 103 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIITRVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 VALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 318 VSATASQADVTDVVPATEG 336 >gi|148259074|ref|YP_001233201.1| acid phosphatase [Acidiphilium cryptum JF-5] gi|326402225|ref|YP_004282306.1| putative peptidase S49 [Acidiphilium multivorum AIU301] gi|146400755|gb|ABQ29282.1| Acid phosphatase [Acidiphilium cryptum JF-5] gi|325049086|dbj|BAJ79424.1| putative peptidase S49 [Acidiphilium multivorum AIU301] Length = 580 Score = 103 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 103/247 (41%), Gaps = 8/247 (3%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEM 106 D L I D S A+++ L +PGG+ + + + KP+I + + Sbjct: 324 IDPARLAHEIATAVADPSIRAIVLRLDTPGGTVTGSAMVGAEVARAARLHKPLIVSMGAL 383 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 AS GY IS ++VA +L GSIGVL L +LGVS+ + S Sbjct: 384 DASGGYWISSHGAVLVADPATLTGSIGVLGGKFSFGGLLARLGVSVSTASRGANALFDSA 443 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 + + +Q +D Y FV V+ R + + + GR+WTGA+A+ GL+D Sbjct: 444 VTPWTEAQLASLQGQLDLDYQKFVGWVAAGRRMSPAQVNAVGQGRVWTGAQARSRGLVDR 503 Query: 227 VGGQEEV---WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 +GG E ++ L D ++ + P + L +P Sbjct: 504 LGGYHEAFMTVRAALHLPADAALDIVPGNEQPGLAALLATLARQANPLEAAALP----EP 559 Query: 284 VQGLWAV 290 ++GL+A+ Sbjct: 560 LRGLFAL 566 Score = 71.2 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 7/215 (3%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79 + ++ + +P G ++ I I+R + D + + L Sbjct: 55 FILSLNLQTAPPDVAAPSALLRRATGATPTLEQTIAAIDRAATDPRVRGIDILLGGGCCG 114 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEM-----AASAGYLISCASNIIVAAETSLVGSIGV 134 E + A+ + + M Y+++ A+N I ++ G G+ Sbjct: 115 LTTAEELHDALARFRAISHRQVVARAMSFDGAEGLGAYIVATAANRIELSDAGDFGVTGL 174 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRL 192 Q P+ L GV + K P F+ + A +MM + S Y + Sbjct: 175 ALQSPFAADLLKMAGVEAQFEHIGKYKTYPELFTRSGPSAAATEMMNSLAGSLYDSALVP 234 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 ++ D+ L D ++ A+AK+ GL+D V Sbjct: 235 IAARLKRSPDQVKALFDQAPFSAAQAKQDGLVDTV 269 >gi|83941426|ref|ZP_00953888.1| peptidase, family protein S49 [Sulfitobacter sp. EE-36] gi|83847246|gb|EAP85121.1| peptidase, family protein S49 [Sulfitobacter sp. EE-36] Length = 250 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 52/252 (20%), Positives = 104/252 (41%), Gaps = 19/252 (7%) Query: 41 IAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 + + G I + I++ A+++ +SSPGGS I I+++ Sbjct: 2 VRLSGVIGGRTRGGLNDSGIGPAIDKAFNRGKPAAVVLEISSPGGSPVQSSLIGARIRRL 61 Query: 94 KNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 K + I V ++AAS GY ++ A++ I A +S++GSIGV+ F+ + GV Sbjct: 62 AEEKNIPVIAFVEDVAASGGYWLAAAADEIYADPSSVLGSIGVISASFGADEFIQRHGVE 121 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + + K+ PF P+ V ++ +++ + F+ V+ R L G Sbjct: 122 RRVYTAGQSKSMLDPFRPEKPEDVARLKQLLEDIHGNFIDHVTSRRGSKLSSDSDLFTGE 181 Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 +W A ++GLID +G + + + K + K + + Sbjct: 182 VWLAKRATELGLIDGIGHLRPMIKQRFG-----DKVKFNRYGTKKGLLSRF-----GAQI 231 Query: 272 LEDTIPLMKQTK 283 + D + +++ Sbjct: 232 IGDAVDSIEERA 243 >gi|257386269|ref|YP_003176042.1| peptidase S49 [Halomicrobium mukohataei DSM 12286] gi|257168576|gb|ACV46335.1| peptidase S49 [Halomicrobium mukohataei DSM 12286] Length = 307 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 69/304 (22%), Positives = 124/304 (40%), Gaps = 30/304 (9%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVY-----FSWSSHVEDNSPHVARIAIRGQIED--SQEL 53 ++ +K + T Y ++ +V L + S + D+ +A + I+G I + E+ Sbjct: 5 IDNYVKTLLTSYTVIIVVALLIGAAVGPAVSSALFQSDDEGTIAAVTIQGPISGPTADEV 64 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 ++ + DDS A+++ + S GGS A EA +RA++++ KPV+T V +AAS Y Sbjct: 65 TRQLRTLRTDDSIDAVVLRIDSGGGSVAASEAQYRAVKRLAREKPVVTSVRGVAASGAYY 124 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 + S+ I A LVGS+GV P +SV + P KA ++ Sbjct: 125 TALPSDEIYATPGGLVGSVGVRALIPQP-------DGVPRSVTTGPDKAGGLTGDDI--- 174 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEE 232 + V++ FV V R + L++ ++++GA A GL D +GG E Sbjct: 175 -----RGQVETLKRSFVDSVYAERGDRLSLSRTELTNAKVYSGAAAVDNGLADEIGGLET 229 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL----- 287 + S + + L +S + +G+ Sbjct: 230 AIAAAAEKAGLDSYDVV--YRSTTPGVLSLLLGSDANSTDAGQVDRASLLTTRGIERPQY 287 Query: 288 WAVW 291 +W Sbjct: 288 LMLW 291 >gi|260460358|ref|ZP_05808610.1| peptidase S49 [Mesorhizobium opportunistum WSM2075] gi|259034003|gb|EEW35262.1| peptidase S49 [Mesorhizobium opportunistum WSM2075] Length = 287 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 61/266 (22%), Positives = 110/266 (41%), Gaps = 14/266 (5%) Query: 37 HVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + I + G I IE+ + A A+ +S++SPGGS I Sbjct: 19 TIPVIRLHGTIMAGGGPFRPSLSLASTAGLIEKAFSFE-APAVAISINSPGGSPVQSRLI 77 Query: 87 FRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 F+ I+ + + K V+ V ++AAS GY+I+ A + I A +S+VGSIGV+ Sbjct: 78 FKRIRDLATEKNKKVLVFVEDVAASGGYMIAVAGDEIFADPSSIVGSIGVVSASFGFPEL 137 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + K+GV + + KA PF + V+ ++ + + F+ LV E R Sbjct: 138 MKKIGVERRVHTAGQNKAVLDPFKPEKKEDVERLKALQLEVHETFIDLVKERRGTKLKDD 197 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA-LGVDQSIRKIKDWNPPKNYWFCDL 263 L G WTG + ++GL+D + V ++ + + I + + + Sbjct: 198 PDLFTGLFWTGKKGLELGLVDALSDMRTVLKTRFGAKTQLRLITAPRGFLGRFGLFGSSQ 257 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289 + ++ + + LWA Sbjct: 258 GFSAPDIAAAAASGVIDAAEERALWA 283 >gi|9626248|ref|NP_040584.1| capsid component [Enterobacteria phage lambda] gi|238903122|ref|YP_002928918.1| Minor capsid protein C (GPC) [Escherichia coli BW2952] gi|253774242|ref|YP_003037073.1| peptidase S49 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|137565|sp|P03711|VCAC_LAMBD RecName: Full=Minor capsid protein C; AltName: Full=Putative peptidase GPC; Short=GPC; Contains: RecName: Full=Capsid assembly protein NU3 gi|215109|gb|AAA96537.1| C (capsid component;439) [Enterobacteria phage lambda] gi|194021578|gb|ACF32387.1| capsid component [Enterobacteria phage DE3] gi|238861774|gb|ACR63772.1| Minor capsid protein C (GPC) [Escherichia coli BW2952] gi|242376543|emb|CAQ31251.1| enterobacteria phage lambda, capsid component [Escherichia coli BL21(DE3)] gi|253325286|gb|ACT29888.1| peptidase S49 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976951|gb|ACT42621.1| capsid component [Escherichia coli BL21(DE3)] Length = 439 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 VVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 318 VSATASQADVTDVVPATEG 336 >gi|157157447|ref|YP_001463293.1| S49 family peptidase [Escherichia coli E24377A] gi|209919414|ref|YP_002293498.1| putative phage minor capsid protein [Escherichia coli SE11] gi|157079477|gb|ABV19185.1| peptidase, S49 (protease IV) family [Escherichia coli E24377A] gi|209912673|dbj|BAG77747.1| putative phage minor capsid protein [Escherichia coli SE11] Length = 436 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 97/223 (43%), Gaps = 14/223 (6%) Query: 38 VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 +A + + G + + +R+++ D +++ + SPGG Sbjct: 79 IAVLPVTGTLVHKLGYINPVSGMSGYDGIAKRLQQAISDPDVKGILLDIDSPGGEVAGAF 138 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I + + +KPV + A SA YL++ A + + +T VGSIGVL + V+ Sbjct: 139 DTADLIARAREQKPVWALASDTACSAAYLLASACSRRLITQTGTVGSIGVLMAHRCVEKA 198 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L+ GV + + + K + +P+S++ Q ++S+ F + VS+ + + Sbjct: 199 LEIAGVDVTLIYAGAHKVDGNPYSQLPDDVRDEFQLSINSTREQFAQKVSDYTGLKKSRV 258 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 L ++ ++ GA+A K GL D + + + ++ R Sbjct: 259 LA-TEAAVFIGADAIKSGLADQLVNYADAIAVMADALKPKTER 300 >gi|320197690|gb|EFW72301.1| Head-tail preconnector protein GP5 [Escherichia coli WV_060327] Length = 439 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIISRLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + + + GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQIARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 318 VSATASQADVTDVVPATEG 336 >gi|315607923|ref|ZP_07882916.1| signal peptide peptidase SppA [Prevotella buccae ATCC 33574] gi|315250392|gb|EFU30388.1| signal peptide peptidase SppA [Prevotella buccae ATCC 33574] Length = 596 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 93/260 (35%), Gaps = 23/260 (8%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELI---------------- 54 ++L ++L + S + + + V I ++G I + ++ I Sbjct: 23 LILGFISLIGIMVSGNGTTKIDDNSVLVINLQGDISEKAEEDFIGRLTGNRINQLGLNEL 82 Query: 55 -ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 + I++ +D + + + + + K I + Y Sbjct: 83 KDAIKKAQDNDKIKGIYLQAGVLQSDYATLQELRNTLADFKKSGKWIIAYGDSYTQGAYY 142 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VN 171 ++ +N + ++ G+ + + K DK+G+ + K K+ ++E ++ Sbjct: 143 LTSIANKLYLNPEGMLDWHGIAARIQFNKGLYDKVGLKYQVFKVGKFKSYTERYTEEQMS 202 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAK--KVGLIDVVGG 229 + ++ ++ + V VS+SRNI K L+D ++ ++D + Sbjct: 203 EPNHEQVKRYINGLWDIMVADVSKSRNIAPTKLRQLADSTLFLNDNKMLVSNKIVDGLLY 262 Query: 230 QEEVWQSLYALGVDQSIRKI 249 +++ ++ + I Sbjct: 263 YDQLKAAMKKQLGIEEDEDI 282 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 62/265 (23%), Positives = 110/265 (41%), Gaps = 22/265 (8%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRD------------DS 65 +TV +S + +A G I S+ L + I D D Sbjct: 285 VTVGDVIEASEEDSQGDAIAVYYCEGSIVRMPSESLFGGEKEIVSDVVCSDLADLADDDD 344 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 A+++ ++S GG AYA E ++R ++ + +KPV+ + MAAS Y +S + +VA Sbjct: 345 VKAVVLRINSGGGDAYASEQLWRQVKLLNAKKPVVVSMSGMAASGAYYMSMGARWLVAQP 404 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM------- 178 T+L GSIG+ P ++ + + A S + P A Sbjct: 405 TTLTGSIGIFACLPDFSELYNQKLGIRFDEEKTNEMATFSYPIGMVPMARHFNATEATAI 464 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 Q+ V+ Y F + V+E R + + ++ GR+W G +A + L+D +GG EE Sbjct: 465 QNYVNRGYVLFRQRVAEGRKMKTAQVEDVAQGRVWLGTDALHLKLVDQLGGLEEAMTKAA 524 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDL 263 L + +++ ++ L Sbjct: 525 QLAKLKK-YHAEEYPLVGSFLEQLL 548 >gi|86356525|ref|YP_468417.1| protease protein [Rhizobium etli CFN 42] gi|86280627|gb|ABC89690.1| protease protein [Rhizobium etli CFN 42] Length = 286 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 116/269 (43%), Gaps = 21/269 (7%) Query: 37 HVARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + + ++G I + +E+ A A+ +S++SPGGS I Sbjct: 19 TIPVVRLQGAIISGGGQFRPTLNLANVAPVLEKAFAMKEAPAVAISINSPGGSPVQSRLI 78 Query: 87 FRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 F I+++ + +K V+ V ++AAS GY+I+ A + I+A TS+VGSIGV+ Sbjct: 79 FTRIRELAREKQKKVLVFVEDVAASGGYMIALAGDEIIADATSIVGSIGVVSGGFGFPEL 138 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K+GV + + K PF K ++ ++ + + F+ +V E R Sbjct: 139 LKKIGVERRVYTAGENKVILDPFQPEKEKDIEYLKSLQLEIHQVFIAMVRERRAGKLTDD 198 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 + G W+G ++GLID +G + + Y +++ + + + Sbjct: 199 ATVFSGLFWSGTRGLELGLIDGLGDMRQELKRRYGQK-----TRLELVTAGRGLFGRRIP 253 Query: 265 NLSISSLLED----TIPLMKQTKVQGLWA 289 +S +L L++ + + LW+ Sbjct: 254 GISPVTLEGAGSGLATGLVEAAEERALWS 282 >gi|15618523|ref|NP_224809.1| protease [Chlamydophila pneumoniae CWL029] gi|15836145|ref|NP_300669.1| protease [Chlamydophila pneumoniae J138] gi|16752427|ref|NP_444686.1| protease IV, putative [Chlamydophila pneumoniae AR39] gi|4376909|gb|AAD18752.1| Protease [Chlamydophila pneumoniae CWL029] gi|7189070|gb|AAF38017.1| protease IV, putative [Chlamydophila pneumoniae AR39] gi|8978985|dbj|BAA98820.1| protease [Chlamydophila pneumoniae J138] Length = 333 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 75/304 (24%), Positives = 138/304 (45%), Gaps = 36/304 (11%) Query: 3 FVLKKIKTRY-----VMLSLVTLTVVYFSWSSHVE-----------------DNSPHVAR 40 FV K + V+L+ V + + S + + +P +A Sbjct: 7 FVSKAFLSIVGLCCGVVLAFVVIFALIASSLGNGDATFVSLPDAQGEVKDLGKTAPIIAV 66 Query: 41 IAIRGQIEDS-------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 I ++ I S Q ++E E+ D +++ + PGG + + I+ ++ Sbjct: 67 IEMKDVIASSKNTAKTIQNILEGFEKAPLKDRVKGIVIDMDCPGGEVFEIDRIYSMLRFW 126 Query: 94 KNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYPYVKPFLDKLGV 150 K RK P+ V+ + AS GY +SCA+ I A +SL+GSIGV + VK L++ GV Sbjct: 127 KERKGFPIYIYVNGLCASGGYYVSCAATKIYATSSSLIGSIGVRSGPFFNVKEGLNRYGV 186 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN-IPYDKTLVLSD 209 + + KA +P++ + Q +D Y FV +V+++R + +K + Sbjct: 187 ESDLLTAGKDKAPMNPYTPWTSHDREERQATLDFLYGQFVDIVTQNRPLLTKEKLVHTLG 246 Query: 210 GRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 RI++ +AK+ G IDVVG +E+V Q + A+ + ++ + W+ + + + Sbjct: 247 ARIFSPEKAKQEGYIDVVGATKEQVLQDIVAVCKIEDNYRVI--GSGGDGWWKRVASAAA 304 Query: 269 SSLL 272 SS L Sbjct: 305 SSPL 308 >gi|254456509|ref|ZP_05069938.1| Clp protease [Candidatus Pelagibacter sp. HTCC7211] gi|207083511|gb|EDZ60937.1| Clp protease [Candidatus Pelagibacter sp. HTCC7211] Length = 268 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 69/272 (25%), Positives = 129/272 (47%), Gaps = 25/272 (9%) Query: 33 DNSPHVARIAIRGQIEDSQELI---------ERIERISRDDSATALIVSLSSPGGSAYAG 83 VA + + G I ++ + E I++ A + ++++SPGGS Sbjct: 6 KKKKIVAHLKLNGVIGNAGKFKQGIDFAGQEEVIKKAFSLKKAHTVAITINSPGGSPVQS 65 Query: 84 EAIFRAIQK--VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 I+ I++ KN+K VI ++AAS GYLISCA + I A +S++GSIGV++ Sbjct: 66 HLIYSFIRQEAKKNKKKVIVFAEDVAASGGYLISCAGDEIYANSSSIIGSIGVIYSSFGF 125 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + K+GV + + K+ PF E + ++ ++ + + F+ +V +SR + Sbjct: 126 TELIKKIGVERRVHTAGKNKSTLDPFLEEKNEDIERLKKIQIDLHKDFIDVVEKSRGLKL 185 Query: 202 DKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 DK+ + L G W+G++AK +GLID +G EV + + IK + K + Sbjct: 186 DKSGVELFSGEFWSGSKAKDLGLIDGIGNAHEVLKEKFG-----DDVIIKKFEKTKGWLS 240 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 L S ++ ++ ++ + ++W Sbjct: 241 QKL--SSSNNQVDQLANILDER------SIWQ 264 >gi|33241968|ref|NP_876909.1| proteinase IV [Chlamydophila pneumoniae TW-183] gi|33236478|gb|AAP98566.1| proteinase IV [Chlamydophila pneumoniae TW-183] Length = 330 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 75/304 (24%), Positives = 138/304 (45%), Gaps = 36/304 (11%) Query: 3 FVLKKIKTRY-----VMLSLVTLTVVYFSWSSHVE-----------------DNSPHVAR 40 FV K + V+L+ V + + S + + +P +A Sbjct: 4 FVSKAFLSIVGLCCGVVLAFVVIFALIASSLGNGDATFVSLPDAQGEVKDLGKTAPIIAV 63 Query: 41 IAIRGQIEDS-------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 I ++ I S Q ++E E+ D +++ + PGG + + I+ ++ Sbjct: 64 IEMKDVIASSKNTAKTIQNILEGFEKAPLKDRVKGIVIDMDCPGGEVFEIDRIYSMLRFW 123 Query: 94 KNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYPYVKPFLDKLGV 150 K RK P+ V+ + AS GY +SCA+ I A +SL+GSIGV + VK L++ GV Sbjct: 124 KERKGFPIYIYVNGLCASGGYYVSCAATKIYATSSSLIGSIGVRSGPFFNVKEGLNRYGV 183 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN-IPYDKTLVLSD 209 + + KA +P++ + Q +D Y FV +V+++R + +K + Sbjct: 184 ESDLLTAGKDKAPMNPYTPWTSHDREERQATLDFLYGQFVDIVTQNRPLLTKEKLVHTLG 243 Query: 210 GRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 RI++ +AK+ G IDVVG +E+V Q + A+ + ++ + W+ + + + Sbjct: 244 ARIFSPEKAKQEGYIDVVGATKEQVLQDIVAVCKIEDNYRVI--GSGGDGWWKRVASAAA 301 Query: 269 SSLL 272 SS L Sbjct: 302 SSPL 305 >gi|186471872|ref|YP_001863190.1| peptidase S49 [Burkholderia phymatum STM815] gi|184198181|gb|ACC76144.1| peptidase S49 [Burkholderia phymatum STM815] Length = 311 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 92/234 (39%), Gaps = 16/234 (6%) Query: 28 SSHVEDNSPHVARIAIRGQ----------IEDS-----QELIERIERISRDDSATALIVS 72 + +A + G I S + + DDS +++ Sbjct: 58 GEAARAGNGSIAVLPFYGVSVQRTTMVEDISGSGLMSIARFTQALRAAVADDSIGGVLID 117 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 + SPGGS Y + + I K + +K ++ + +AASA + I ++ GSI Sbjct: 118 VDSPGGSVYGVQELGDEIYKARGQKLIVACANSLAASAAFWIGSSAGEFYVTPGGEAGSI 177 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GV + L+K GV + + K E +P+ ++ +A MQ VDS Y F R Sbjct: 178 GVFAAHENWAAALEKAGVEATLISAGKYKTEGNPYGPLSEEARTFMQSRVDSYYGAFTRA 237 Query: 193 VSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 V+ +R + +GR+ +EAK ++D V ++V + Sbjct: 238 VARNRGTDVATVRGGMGEGRVLGASEAKAANMVDDVATFDQVLGRMAKAIGQGK 291 >gi|324009542|gb|EGB78761.1| putative signal peptide peptidase SppA [Escherichia coli MS 57-2] Length = 430 Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 67 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 187 AVLEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 246 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSSDAITVMRD 282 >gi|306813973|ref|ZP_07448146.1| Minor capsid protein C from bacteriophage origin [Escherichia coli NC101] gi|222032926|emb|CAP75666.1| capsid protein of prophage [Escherichia coli LF82] gi|305852610|gb|EFM53058.1| Minor capsid protein C from bacteriophage origin [Escherichia coli NC101] gi|312945741|gb|ADR26568.1| Minor capsid protein C from bacteriophage origin [Escherichia coli O83:H1 str. NRG 857C] Length = 443 Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AVLEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSSDAITVMRD 295 >gi|288924896|ref|ZP_06418832.1| signal peptide peptidase SppA, 67K type [Prevotella buccae D17] gi|288338086|gb|EFC76436.1| signal peptide peptidase SppA, 67K type [Prevotella buccae D17] Length = 596 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 93/260 (35%), Gaps = 23/260 (8%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELI---------------- 54 ++L ++L + S + + + V I ++G I + ++ I Sbjct: 23 LILGFISLVGIMVSGNGTTKIDDNSVLVINLQGDISEKAEEDFIGRLTGNRINQLGLNEL 82 Query: 55 -ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 + I++ +D + + + + + K I + Y Sbjct: 83 KDAIKKAQDNDKIKGIYLQAGVLQSDYATLQELRNTLADFKKSGKWIIAYGDSYTQGAYY 142 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VN 171 ++ +N + ++ G+ + + K DK+G+ + K K+ ++E ++ Sbjct: 143 LTSVANKLYLNPEGMLDWHGIAARIQFNKGLYDKVGLKYQVFKVGKFKSYTERYTEEQMS 202 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAK--KVGLIDVVGG 229 + ++ ++ + V VS+SRNI K L+D ++ ++D + Sbjct: 203 EPNHEQVKRYINGLWDIMVADVSKSRNIAPTKLRQLADSTLFLNDNKMLVSNKIVDGLLY 262 Query: 230 QEEVWQSLYALGVDQSIRKI 249 +++ ++ + I Sbjct: 263 YDQLKAAMKKQLGIEEDEDI 282 Score = 100 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 63/265 (23%), Positives = 111/265 (41%), Gaps = 22/265 (8%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRD------------DS 65 +TV +S + +A G I S+ L + I D D Sbjct: 285 VTVGDVIEASEEDTKGDAIAVYYCEGSIVRMPSESLFGGEKEIVSDVVCSDLADLADDDD 344 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 A+++ ++S GG AYA E ++R ++ + +KPV+ + MAAS Y +S + +VA Sbjct: 345 VKAVVLRINSGGGDAYASEQLWRQVKLLNAKKPVVVSMSGMAASGAYYMSMGARWLVAQP 404 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM------- 178 T+L GSIG+ P ++ + + A S + P A Sbjct: 405 TTLTGSIGIFACLPDFSELYNQKLGIRFDEEKTNEMATFSYPIGMVPMARHFNATEATAI 464 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 Q+ V+ Y F + V+E R + + ++ GR+W G +A ++ LID +GG EE Sbjct: 465 QNYVNRGYVLFRQRVAEGRKMKTAQVEDVAQGRVWLGTDALRLKLIDQLGGLEEAMTKAA 524 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDL 263 L + +++ ++ L Sbjct: 525 QLAKLKK-YHAEEYPLVGSFLEQLL 548 >gi|212702705|ref|ZP_03310833.1| hypothetical protein DESPIG_00733 [Desulfovibrio piger ATCC 29098] gi|212673865|gb|EEB34348.1| hypothetical protein DESPIG_00733 [Desulfovibrio piger ATCC 29098] Length = 401 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 55/251 (21%), Positives = 108/251 (43%), Gaps = 13/251 (5%) Query: 38 VARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 VA I+I G I + + ++ +D+ +++S +SPGG A + + Sbjct: 48 VAVISITGVISRKESWWADVGQDGIRQALDEARQDERVRGILLSFNSPGGVAAGVKELAD 107 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 I + KPV + ASA Y ++ A+ + A + VGS+GV+ + + FLDK+ Sbjct: 108 YIASID-DKPVAAYADGLTASAAYWLASATGRVYAPAMAQVGSVGVISEVRNISGFLDKM 166 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 GVSI + S K +P ++ P+ Q+ VD+ + F V++ I D + Sbjct: 167 GVSITYIASGKWKTAGNPVEKLTPEQTAYFQERVDALHTVFKADVAQHMGISQD--PAWT 224 Query: 209 DGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + +I A+++GL+ + +++ L + + + ++ + L Sbjct: 225 EAQILFAQSAQQLGLVTAIVRDEDQAINRLLEVTMPDNSPDAPAQAMTRDRLAAEAPELL 284 Query: 268 ISSLLEDTIPL 278 + L E Sbjct: 285 QALLEEGRDSA 295 >gi|116250715|ref|YP_766553.1| peptidase [Rhizobium leguminosarum bv. viciae 3841] gi|115255363|emb|CAK06438.1| putative peptidase [Rhizobium leguminosarum bv. viciae 3841] Length = 286 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 116/269 (43%), Gaps = 21/269 (7%) Query: 37 HVARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + + ++G I + +E+ A A+ +S++SPGGS I Sbjct: 19 TIPVVRLQGAIISGGGQFRPTLNLANVSPVLEKAFAMKDAPAVAISINSPGGSPVQSRLI 78 Query: 87 FRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 F I+++ + +K V+ V ++AAS GY+I+ A + I+A TS+VGSIGV+ Sbjct: 79 FTRIRELAREKQKKVLVFVEDVAASGGYMIALAGDEIIADATSIVGSIGVVSGGFGFPEL 138 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K+GV + + K PF K ++ ++ + + F+ +V E R Sbjct: 139 LKKIGVERRVYTAGENKVILDPFQPEKEKDIEYLKSLQLEIHQVFISMVRERRAGKLRDD 198 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 + G W+G ++GLID +G + + Y K++ + + + Sbjct: 199 AAVFSGLFWSGTRGLELGLIDGLGDMRQELKRRYGQT-----TKLELVTAGRGLFGRRIP 253 Query: 265 NLSISSLLED----TIPLMKQTKVQGLWA 289 +S SL L++ + + LW+ Sbjct: 254 GVSPVSLEGAASGLATGLVEAAEERALWS 282 >gi|91975697|ref|YP_568356.1| peptidase S49 [Rhodopseudomonas palustris BisB5] gi|91682153|gb|ABE38455.1| peptidase S49 [Rhodopseudomonas palustris BisB5] Length = 299 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 70/287 (24%), Positives = 123/287 (42%), Gaps = 19/287 (6%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQI---------EDSQELIERIERISRDDSATAL 69 L + + P V + + G I + +ER +A A+ Sbjct: 13 VLAGFGKLIPARFRSDIPVVPVVRLSGVIGAVTPLRPGMTLAGVARLLERAFATRNAKAV 72 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETS 127 ++++SPGGS I+ I+ + K PVI V ++AAS GY+I+CA++ I +S Sbjct: 73 ALAINSPGGSPVQSRLIYLRIRALAAEKKLPVIAFVEDVAASGGYMIACAADEIYCDPSS 132 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 +VGSIGV+ + + K+GV + + KA+ PF +P V ++ + + Sbjct: 133 IVGSIGVVGGGFGFQEMIKKIGVERRLYTAGDHKAQLDPFLPEDPADVARVKALQREIHA 192 Query: 188 WFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 F+ LV +SR VL G W GA + +GL D +G V ++ + V + Sbjct: 193 LFISLVKDSRGARLKGAEDVLFSGEYWAGATSVSLGLSDAIGDLRAVLRARFGDKVRTPV 252 Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL--WAVW 291 PP ++ S + D + + ++ + L A+W Sbjct: 253 V-----APPSGLLASFMRRSSGAEASLDGLAALPESLISALETRAIW 294 >gi|114765597|ref|ZP_01444698.1| Periplasmic serine protease [Pelagibaca bermudensis HTCC2601] gi|114542046|gb|EAU45079.1| Periplasmic serine protease [Roseovarius sp. HTCC2601] Length = 457 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 86/227 (37%), Gaps = 15/227 (6%) Query: 36 PHVARIAIRGQ-------IEDS-------QELIERIERISRDDSATALIVSLSSPGGSAY 81 VA I I G I +S + + ++ + + + + S GG Sbjct: 78 DGVAVIPITGSLIHRGSYIGESFSGNQTYEGISAQLTAAAESPMVRGVALEIDSFGGEVA 137 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + I+ + +KPV + A SA Y I+ ++ I+ + GSIGV+ + Sbjct: 138 GCFELADEIRALSAQKPVWAFISAHAFSAAYAIASQADRIIIPRSGGAGSIGVICMHADQ 197 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L+ GV + + + K + +P+ + + +Q + F V+E R Sbjct: 198 SERLEANGVRVTVISAGAHKGDGNPYEPLPEAVREDLQRECEDLRQLFAETVAEGRGDRL 257 Query: 202 DKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 L ++ R + GA+A + GL D V ++ A + Sbjct: 258 TLEAALATEARTFIGAQAVEAGLADEVDNPRAAFERFVAQINGRPAP 304 >gi|114766960|ref|ZP_01445880.1| Periplasmic serine protease [Pelagibaca bermudensis HTCC2601] gi|114540867|gb|EAU43929.1| Periplasmic serine protease [Roseovarius sp. HTCC2601] Length = 457 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 86/227 (37%), Gaps = 15/227 (6%) Query: 36 PHVARIAIRGQ-------IEDS-------QELIERIERISRDDSATALIVSLSSPGGSAY 81 VA I I G I +S + + ++ + + + + S GG Sbjct: 78 DGVAVIPITGSLIHRGSYIGESFSGNQTYEGISAQLTAAAESPMVRGVALEIDSFGGEVA 137 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + I+ + +KPV + A SA Y I+ ++ I+ + GSIGV+ + Sbjct: 138 GCFELADEIRALSAQKPVWAFISAHAFSAAYAIASQADRIIIPRSGGAGSIGVICMHADQ 197 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L+ GV + + + K + +P+ + + +Q + F V+E R Sbjct: 198 SERLEANGVRVTVISAGAHKGDGNPYEPLPEAVREDLQRECEDLRQLFAETVAEGRGDRL 257 Query: 202 DKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 L ++ R + GA+A + GL D V ++ A + Sbjct: 258 TLEAALATEARTFIGAQAVEAGLADEVDNPRAAFERFVAQINGRPAP 304 >gi|241203318|ref|YP_002974414.1| peptidase S49 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857208|gb|ACS54875.1| peptidase S49 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 286 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 117/269 (43%), Gaps = 21/269 (7%) Query: 37 HVARIAIRGQIEDS----------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + + ++G I + +E+ A A+ +S++SPGGS I Sbjct: 19 TIPVVRLQGAIISGGGQFRPTLNLANVSPVLEKAFAMKDAPAIAISINSPGGSPVQSRLI 78 Query: 87 FRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 F I+++ + +K V+ V ++AAS GY+I+ A + I+A TS+VGSIGV+ Sbjct: 79 FTRIRELAREKQKKVLVFVEDVAASGGYMIALAGDEIIADATSIVGSIGVVSGGFGFPEL 138 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K+GV + + K PF K ++ ++ + + F+ +V E R Sbjct: 139 LKKIGVERRVYTAGENKVILDPFQPEKEKDIEYLKSLQLEIHQVFISMVRERRASKLRDD 198 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 + G W+G ++GLID +G + + Y K++ + + + Sbjct: 199 ATVFSGLFWSGTRGLELGLIDGLGDMRQELKRRYGQK-----TKLELVTAGRGLFGRRIP 253 Query: 265 NLSISSLLED----TIPLMKQTKVQGLWA 289 +S SL + L++ + + LW+ Sbjct: 254 GVSPVSLEDAASGLATGLVEAAEERALWS 282 >gi|146276161|ref|YP_001166320.1| peptidase S49 [Rhodobacter sphaeroides ATCC 17025] gi|145554402|gb|ABP69015.1| peptidase S49 [Rhodobacter sphaeroides ATCC 17025] Length = 461 Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 1/203 (0%) Query: 39 ARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 A I + + L +++ + D A+++ L SPGG A A+ +++V KP Sbjct: 92 AWIGASSGLTSYEGLAKQLTDAAADPKVKAIMLDLDSPGGEATGMFALAAKVREVAAEKP 151 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 V+ V++MAASA Y I+ + IV + TS+VGSIGV+ + L G+ + + Sbjct: 152 VVAVVNDMAASAAYGIASQATEIVVSPTSIVGSIGVVLTHLDRSGELAAKGIKPTLIHAG 211 Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAE 217 K + +PF ++ +Q V Y FV LV++ R ++ R + G E Sbjct: 212 AHKVDGNPFGPLSDAVRADLQAEVGQFYDQFVGLVAQGRGAKLSAAKARATEARTFIGQE 271 Query: 218 AKKVGLIDVVGGQEEVWQSLYAL 240 A GL D V E V SL + Sbjct: 272 AIDRGLADRVSTFEAVLASLQSK 294 >gi|282879549|ref|ZP_06288280.1| signal peptide peptidase SppA, 67K type [Prevotella timonensis CRIS 5C-B1] gi|281306497|gb|EFA98526.1| signal peptide peptidase SppA, 67K type [Prevotella timonensis CRIS 5C-B1] Length = 589 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 36/261 (13%), Positives = 90/261 (34%), Gaps = 23/261 (8%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------------QE 52 +L ++++ + S + + V + + G +++ E Sbjct: 22 LAILGVMSIIGMITSTQATQNVSKNSVLVLNLSGTLQEQSDDNVFGLFAQDSFGSLGLDE 81 Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ I++ D + + + + I A+ K I + + Y Sbjct: 82 ILSAIKKAKETDKIKGIYIESGMFVADYASRQEIRNALLDFKKSGKKIVAYADSYSQGNY 141 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEV 170 I+ ++ + ++ G+ + ++K L K G+ + +K K+ F ++ Sbjct: 142 YIASVADKVFLNPQGMIDWHGIGAEPMFLKDLLAKFGIRFQVIKVGKYKSATESFTADKM 201 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW--TGAEAKKVGLIDVVG 228 + + Q ++ + + VS+SR I DK +D I + L+D + Sbjct: 202 SEPNREQTQAYINGLWANVCQAVSQSRKISVDKLNEYADSLIAFNNPKDYVSAKLVDGLL 261 Query: 229 GQEEVWQSLYALGVDQSIRKI 249 +EV + + I Sbjct: 262 YTDEVKKEVKKTFDLDMDDPI 282 Score = 99.3 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 63/274 (22%), Positives = 122/274 (44%), Gaps = 17/274 (6%) Query: 30 HVEDNSPHVARIAIRGQIED---------------SQELIERIERISRDDSATALIVSLS 74 + + +A G I D ++ + +E ++ DD +++ ++ Sbjct: 294 KEKSDGDEIAVYYAYGNIVDNPITGGIFGGQHAIVGPDVCKDLEALADDDDVKGVVLRIN 353 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 S GGSAYA E ++ I ++K +KPV+ + MAAS GY +SC +N IVA T+L GSIG+ Sbjct: 354 SGGGSAYASEQMWHQIAELKKKKPVVVSMGGMAASGGYYMSCNANWIVAQPTTLTGSIGI 413 Query: 135 LFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 P L KLG+ VK++ S +N + + + +D Y+ F + V Sbjct: 414 FGMIPDRSQLLTQKLGIKFDEVKTNRNALMGSNARPMNEEEIGYLTRYIDRGYNLFRKRV 473 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 ++ R + ++ ++ G ++ G +A K+ L+D +GG ++ A ++ Sbjct: 474 ADGRKMSINQVEEIAQGHVFLGQDALKIKLVDELGGLDKAIAK-AAKLAKIDKYHTSNYP 532 Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 ++ K + L++ + + Sbjct: 533 GGDDWLEQLFKMTGGGNYLDEQMRTALGDYYEPF 566 >gi|269302396|gb|ACZ32496.1| putative signal peptide peptidase SppA, 36K type [Chlamydophila pneumoniae LPCoLN] Length = 333 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 75/304 (24%), Positives = 137/304 (45%), Gaps = 36/304 (11%) Query: 3 FVLKKIKTRY-----VMLSLVTLTVVYFSWSSHVE-----------------DNSPHVAR 40 FV K + V+L+ V + + S + + +P +A Sbjct: 7 FVSKAFLSIVGLCCGVVLAFVVIFALIASSLGNGDATFVSLPDAQGEVKDLGKTAPIIAV 66 Query: 41 IAIRGQIEDS-------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 I ++ I S Q ++E E+ D +++ + PGG + + I+ ++ Sbjct: 67 IEMKDVIASSKNTAKTIQNILEGFEKAPLKDRVKGIVIDMDCPGGEVFEIDRIYSMLRFW 126 Query: 94 KNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYPYVKPFLDKLGV 150 K RK P+ V+ + AS GY +SCA+ I A +SL+GSIGV + VK L++ GV Sbjct: 127 KERKGFPIYIYVNGLCASGGYYVSCAATKIYATSSSLIGSIGVRSGPFFNVKEGLNRYGV 186 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN-IPYDKTLVLSD 209 + + KA +P+ + Q +D Y FV +V+++R + +K + Sbjct: 187 ESDLLTAGKDKAPMNPYIPWTSHDREERQATLDFLYGQFVDIVTQNRPLLTKEKLVHTLG 246 Query: 210 GRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 RI++ +AK+ G IDVVG +E+V Q + A+ + ++ + W+ + + + Sbjct: 247 ARIFSPEKAKQEGYIDVVGATKEQVLQDIVAVCKIEDNYRVI--GSGGDGWWKRVASAAA 304 Query: 269 SSLL 272 SS L Sbjct: 305 SSPL 308 >gi|23016403|ref|ZP_00056159.1| COG0616: Periplasmic serine proteases (ClpP class) [Magnetospirillum magnetotacticum MS-1] Length = 410 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 60/258 (23%), Positives = 107/258 (41%), Gaps = 16/258 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVS 72 + S+ V S +A I + G + ++ + IE + D A+++ Sbjct: 46 APSADVAVTSDGIAIIPVIGTLVARSGYLGAASGLTAYSDIADTIEAAATDPGVRAILLD 105 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + S GG + IQ ++++ KP+ E A SA Y I+C ++ + +T VG Sbjct: 106 VDSSGGEVGGLFDLVDHIQAIRSQCGKPIWAVADEAALSAAYAIACTADRLYVTQTGEVG 165 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ + + G++ V + K + +P ++ A M+Q VD+ Y F Sbjct: 166 SIGVVAVHRDESGADAQAGLAWSFVHAGAAKVDGNPHQPLSDSARAMLQADVDALYGKFT 225 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 LV+E R + D + +++ G +A GL D VG L A SIR Sbjct: 226 TLVAERRCLSPDVVRAT-EAQVYRGDQAVTAGLADKVGTMRIALADLGATLARPSIRSPV 284 Query: 251 DWNPPKNYWFCDLKNLSI 268 P + ++ + Sbjct: 285 LSKPKETTMSEQTGDIPV 302 >gi|254476437|ref|ZP_05089823.1| peptidase S49 [Ruegeria sp. R11] gi|214030680|gb|EEB71515.1| peptidase S49 [Ruegeria sp. R11] Length = 265 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 14/248 (5%) Query: 33 DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 P VA + ++G I + L +ER R A+ ++SPGGS Sbjct: 9 KKPPLVAVVRLQGAIGMAGRGALNDVTLAPVLERAFRKGKPAAVAFEINSPGGSPVQSAL 68 Query: 86 IFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I I+++ + P + V ++AAS GY ++ +++ I A ++S+VGSIGV+ Sbjct: 69 IGARIRRLSQELKVPTLAFVEDVAASGGYWLAASADEIYADDSSVVGSIGVISAGFGAHV 128 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L + GV + + K+ PF NP+ V +++++ + F+ V + R + Sbjct: 129 LLARQGVERRVYTAGKSKSMLDPFRPENPEDVARLKELLGDIHENFITHVKDRRGDKLVQ 188 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L G IW G A +GLID + + + L A D+ +++ + K Sbjct: 189 DQDLFTGEIWLGRRAVSLGLIDGI---DHLRPKLQARFGDK--VRLRRYGVKKPLLGRLG 243 Query: 264 KNLSISSL 271 ++ +L Sbjct: 244 MQVAQDAL 251 >gi|282891036|ref|ZP_06299541.1| hypothetical protein pah_c045o044 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499029|gb|EFB41343.1| hypothetical protein pah_c045o044 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 344 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 69/329 (20%), Positives = 131/329 (39%), Gaps = 38/329 (11%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVE----------------------DNSPHVAR 40 F++ K V+L ++ + + S +P V Sbjct: 13 FIIAFCKIFGVLLGVLLAISAFSLFESKESEITSEYSLEIAPNAKNVRTALSSTAPVVLV 72 Query: 41 IAIRGQIEDS--------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 + I G I Q+LIE E ++ A+ + +++PGG+ + + I+R+++ Sbjct: 73 LPIDGLIGGESLNAKTVRQQLIESREGTLSNNRVKAIFLEINTPGGTVFDADGIYRSLKA 132 Query: 93 VKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYPYVKPFLDKLG 149 K PV V + AS G ++ A++ + A++ SLVGS+GV+ Y + LDK+G Sbjct: 133 YKKEFDVPVFAYVDGLCASGGMYVASAADKVYASDVSLVGSVGVITSSYLNLSQLLDKIG 192 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI-PYDKTLVLS 208 V ++ + K E +P P MQ +++ Y FV +V+ +R +K + Sbjct: 193 VQSLTLSAGKGKDELNPLRPWKPGEQDKMQGLINFYYQHFVGVVTANRPQLNKEKLVDEY 252 Query: 209 DGRIWTGAEAKKVGLIDVVGGQE-EVWQSLYALGVDQSIRKIKDWNPPKNYW---FCDLK 264 ++ EA G ID G E ++L + KN++ F + Sbjct: 253 GASVFPADEAFAKGYIDGSGFSRGEALKALLKQIGIEDDFYQVMKFQGKNWFSQIFSETN 312 Query: 265 NLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 L+ S+ + +++P Sbjct: 313 ALASGSIQLRLPQELDAKFSNQPLYLYHP 341 >gi|254452000|ref|ZP_05065437.1| peptidase S49 [Octadecabacter antarcticus 238] gi|198266406|gb|EDY90676.1| peptidase S49 [Octadecabacter antarcticus 238] Length = 262 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 64/259 (24%), Positives = 111/259 (42%), Gaps = 20/259 (7%) Query: 33 DNSPHVARIAIRGQIE------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + PHVA I ++G I + L + IE+ R A+ + +SSPGGS I Sbjct: 9 KSDPHVAVIRLQGAIATSGRALSDRGLADSIEKAFRSKP-KAVALEISSPGGSPVQSSLI 67 Query: 87 FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I+++ + K PV + V ++AAS GY ++ A + I S+VGSIGV+ + Sbjct: 68 CARIRRLADEKDIPVYSFVEDVAASGGYWLATAGDEIYVDRGSIVGSIGVISAGFGLTGT 127 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 LDK+G + + K+ PF P V+ ++ ++ + +F VS R Sbjct: 128 LDKIGAERRVYTAGKSKSMLDPFQAEKPADVKRLKGLLRDMHVFFKDHVSTRRAGKLVD- 186 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 L G IW G ++ VGL D +G + + K + + K Sbjct: 187 QDLFTGDIWVGQKSIDVGLADHLGHLVPTMKDRFG-----DKTKFRRFGQKKPLLARF-- 239 Query: 265 NLSISSLLEDTIPLMKQTK 283 + +++D +++ Sbjct: 240 ---GAQIIDDAYGGIEERA 255 >gi|330813966|ref|YP_004358205.1| macromolecule degradation protein [Candidatus Pelagibacter sp. IMCC9063] gi|327487061|gb|AEA81466.1| macromolecule degradation protein [Candidatus Pelagibacter sp. IMCC9063] Length = 267 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 114/238 (47%), Gaps = 17/238 (7%) Query: 38 VARIAIRGQIEDSQELI---------ERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 +A I + G I + E I++ A+ ++++SPGGS ++ Sbjct: 9 IAHIRLSGVIGNVGRFQQGLSYASHHEIIKKAFSLKKIKAVAITINSPGGSPVQSHLLYS 68 Query: 89 AIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 I+K+ + K V IT ++AAS GY+++CA + I A +S++GSIGV++ + + Sbjct: 69 LIRKLADEKKVKVITFAEDVAASGGYMLACAGDEIYANASSILGSIGVIYSGFGFQELIK 128 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTL 205 K GV + + K+ PF E P+ +Q ++ + + + F+ LV SR Sbjct: 129 KAGVERRVHTAGTSKSILDPFVEEKPEDIQKLKAIQEELHKEFILLVKNSRKGKITLADD 188 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L G W G+++K++GLID +G +V + + K+K++ + + L Sbjct: 189 KLFTGEFWAGSKSKELGLIDGIGNMFQVIEDQFG-----KDVKVKNFEKQEGWLKKKL 241 >gi|324114286|gb|EGC08257.1| peptidase S49 [Escherichia fergusonii B253] Length = 439 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 VFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRE-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D + + Sbjct: 318 VSATASQADVTDVVSATEG 336 >gi|331646437|ref|ZP_08347540.1| minor capsid protein C (GPC) [Escherichia coli M605] gi|331045189|gb|EGI17316.1| minor capsid protein C (GPC) [Escherichia coli M605] Length = 484 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 125 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 184 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 185 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 244 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 245 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 304 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 305 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 362 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + +P + Sbjct: 363 VSATASQADVTGVVPATEG 381 >gi|327252651|gb|EGE64308.1| minor capsid protein C [Escherichia coli STEC_7v] Length = 439 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + +P + Sbjct: 318 VSATASQADVTGVVPATEG 336 >gi|330910981|gb|EGH39491.1| head-tail preconnector protein GP5 [Escherichia coli AA86] Length = 439 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + +P + Sbjct: 318 VSATASQADVTGVVPATEG 336 >gi|327253537|gb|EGE65170.1| minor capsid protein C domain protein [Escherichia coli STEC_7v] Length = 315 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295 >gi|323963682|gb|EGB59198.1| peptidase S49 [Escherichia coli M863] Length = 439 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295 >gi|163739566|ref|ZP_02146976.1| peptidase, family S49 [Phaeobacter gallaeciensis BS107] gi|161387319|gb|EDQ11678.1| peptidase, family S49 [Phaeobacter gallaeciensis BS107] Length = 265 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 9/205 (4%) Query: 36 PHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 P VA + + G I + L +ER R A+ ++SPGGS I Sbjct: 12 PLVAVVRLNGAIGMAGRGALNDAALGPVLERAFRKGKPAAVAFEINSPGGSPVQSALIGA 71 Query: 89 AIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 I+++ + P I V ++AAS GY ++ +++ I A E+S++GSIGV+ FL Sbjct: 72 RIRRLSEELKVPTIAFVEDVAASGGYWLAASADEIWADESSILGSIGVISAGFGAHVFLA 131 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 + GV + + K+ PF N + V+ ++ ++ + F+ V + R D + Sbjct: 132 RQGVERRVYTAGRSKSMLDPFRPENAEDVKRLKQLLGDIHDNFIAHVKDRRGDKLDTSKD 191 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQE 231 L G IW G A +GLID +G Sbjct: 192 LYTGEIWLGRRAVSLGLIDGIGHLR 216 >gi|253572823|ref|ZP_04850222.1| protease IV [Bacteroides sp. 1_1_6] gi|251837555|gb|EES65647.1| protease IV [Bacteroides sp. 1_1_6] Length = 491 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 98/264 (37%), Gaps = 26/264 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------------------D 49 ++ +VTL + + + V + + G + Sbjct: 22 LFIIGMVTLFGIVSTADTETIVKKNSVMMLDLNGVLVERTQESPLGILSQLFSDDSNTYG 81 Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 +++ I++ +++ + + S G S + + I A+ K I + Sbjct: 82 LDDILSSIKKAKENENIKGIYLQASMLGTSYASLQEIRNALLDFKESGKFIIAYGDSYTQ 141 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-- 167 Y +S ++ ++ ++ G+ + K L K+GV ++ K K+ PF Sbjct: 142 GLYYLSSVADKVLLNPKGMIEWKGIASAPLFYKDLLQKIGVEMQIFKVGTYKSAVEPFIS 201 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--RIWTGAEAKKVGLID 225 +E++P + + ++S + VS SR++P D L+D + E+ + GL D Sbjct: 202 TEMSPANREQVTAFINSIWGQVTEGVSASRSLPVDSLNALADRMLMFYPAEESVQCGLAD 261 Query: 226 VVGGQEEVWQSLYALGVDQSIRKI 249 + + +V L + ++ Sbjct: 262 TLIYRNDVRNYLKQWVDLKEDDRL 285 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 12/203 (5%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRD 63 L ++ + + + VA G+I D ++I + ++ D Sbjct: 287 VLGLSDMINVKKNMPKDKSGNIVAVYYASGEITDYSGSSTSEEGIVGTKVIRDLRKLKDD 346 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 + A+++ ++SPGGSA+A E I+ A++++K KPVI + + AAS GY ISC ++ IVA Sbjct: 347 EDVKAVVLRVNSPGGSAFASEQIWHAVKELKTEKPVIVSMGDYAASGGYYISCVADTIVA 406 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 T+L GSIG+ P VK +K+G++ VK++ + N +MQ ++ Sbjct: 407 EPTTLTGSIGIFGMVPNVKELSEKIGLTYDVVKTNKFSDFGNIMRPFNQDEKTLMQMMIT 466 Query: 184 SSYHWFVRLVSESRNIPYDKTLV 206 Y FV +E R++ + Sbjct: 467 QGYDTFVNRCAEGRHMSKEAIEE 489 >gi|289582290|ref|YP_003480756.1| peptidase S49 [Natrialba magadii ATCC 43099] gi|289531843|gb|ADD06194.1| peptidase S49 [Natrialba magadii ATCC 43099] Length = 328 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 51/273 (18%), Positives = 90/273 (32%), Gaps = 27/273 (9%) Query: 29 SHVEDNSPHVARIAIRGQIE--DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 VA I + I + ++ + ++S A+++ + SPGG A E + Sbjct: 39 GAASGPDGTVAVIEVDQSITEASAADITADLAEARENESIDAVVLDVDSPGGGVTASEQL 98 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 + A+ + PV+T V M S Y +S ++ + + +S VGSIGV + P +D Sbjct: 99 YLAVDRTAAEMPVVTSVQSMGTSGAYYMSAPTDEMYVSPSSTVGSIGVRATHLD-SPPMD 157 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTL 205 V + P K + + F+ V E R + Sbjct: 158 G------EVTTGPDKGSMTADQVKDQTEQM---------KQTFLGSVLEHRGDELELTER 202 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 LS +++ G EA + GL D +G E + ++ + Sbjct: 203 ELSYAKVYIGTEAVENGLADEIGDTEVAIGAAADRAGL-DDYEVVRMEREAALGTGVVLE 261 Query: 266 LSISSLLE-------DTIPLMKQTKVQGLWAVW 291 S T A+W Sbjct: 262 SGESVDAGSEPHVHPQTFGQYGDVTTPAFLALW 294 >gi|58616276|ref|YP_195405.1| periplasmic serine protease (ClpP class) [Azoarcus sp. EbN1] gi|56315737|emb|CAI10381.1| predicted periplasmic serine proteases (ClpP class) [Aromatoleum aromaticum EbN1] Length = 329 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 61/276 (22%), Positives = 118/276 (42%), Gaps = 19/276 (6%) Query: 2 EFVLKKIKTRYVMLSLVTLTVVYFS-------WSSHVEDNSPHVARIAIRGQIED---SQ 51 + + + + + V + Y S ++ P +A + I G I + + Sbjct: 39 KLFRRFMIASFFIGGAVLYAMFYTSTLGIKVNIFERFKEREPELAVVRISGTIGELVTAD 98 Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ--KVKNRKPVITEVHEMAAS 109 LI I + A+++ ++SPGG+ E I ++ ++ + P+ + + AS Sbjct: 99 TLIPAIRSAFEAKTTKAVVLQINSPGGAPGDAERIGSFVREMRLSSEIPIHAVIEGIGAS 158 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A YLI+ ++ I A SLVGSIG + LD++GV ++ S +K+ +PF+ Sbjct: 159 AAYLIAMETDSIYAGRYSLVGSIGAVLSAWEAHQLLDRIGVQQRTFSSGELKSMLNPFAP 218 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 N + Q +VD F + +R + G +W G A+++GL+D +G Sbjct: 219 PNEEGNAKAQSLVDEMGEMFREDLMLARAKKLTSGIDYGTGEVWNGVVAQEIGLVDEIGT 278 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 E + + K++ + P + Y F + Sbjct: 279 IESIQSK-------YGLEKLRVYRPFRPYSFMRMMA 307 >gi|300936151|ref|ZP_07151089.1| putative signal peptide peptidase SppA [Escherichia coli MS 21-1] gi|300458690|gb|EFK22183.1| putative signal peptide peptidase SppA [Escherichia coli MS 21-1] Length = 426 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 67 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 246 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 304 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D + + Sbjct: 305 VSATASQADVTDVVQATEG 323 >gi|170742279|ref|YP_001770934.1| peptidase S49 [Methylobacterium sp. 4-46] gi|168196553|gb|ACA18500.1| peptidase S49 [Methylobacterium sp. 4-46] Length = 481 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 1/194 (0%) Query: 44 RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 G I + ++ + D A+++ L SPGG A +++V ++K V V Sbjct: 121 SGLI-SYEGFAYQMRMAAADPRTKAILLDLESPGGEAVGAFEAAELVRQVASQKSVTALV 179 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 + MA+SA Y I+ ++ IV+ T L GSIGV+ + + +L G+ + + K + Sbjct: 180 NGMASSAAYAIASGASRIVSIPTGLAGSIGVVLMHLDISEYLRAEGMKPTLIFAGDHKVD 239 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 +PF + +Q V+ Y FV V+ R ++ + ++ R + G EA K GL Sbjct: 240 WNPFEPLPDAVRADLQKEVEGFYAKFVTTVAAGRPGLSEQAIRDTEARTFMGEEAIKAGL 299 Query: 224 IDVVGGQEEVWQSL 237 +D +G + V L Sbjct: 300 VDAIGTFDAVLADL 313 >gi|227540619|ref|ZP_03970668.1| protease IV [Sphingobacterium spiritivorum ATCC 33300] gi|227239558|gb|EEI89573.1| protease IV [Sphingobacterium spiritivorum ATCC 33300] Length = 473 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 98/270 (36%), Gaps = 25/270 (9%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI---------------- 47 V+ + V+ ++ + S + V I + +I Sbjct: 16 VIATVILFIVIAGIIGSLISSASTDAAPVVADNSVLYITLNHEIKERSETNPLEGVDIPG 75 Query: 48 ------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 +++ERI+ D + +++S + I A+ K K I Sbjct: 76 FGTTKTLGLDDILERIQSAKSDSKIKGIYLNISGVNTGFATLQEIRDALIDFKASKKFIV 135 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 E Y ++ ++ I + G+ ++K LDKLGV ++ VK K Sbjct: 136 SYSEGYTQKAYYLASVADKIYLNPEGSLDFRGLSTSIMFMKDALDKLGVDMQVVKVGTYK 195 Query: 162 AEPSPFS--EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEA 218 + PF ++ ++ + S Y F+ VS SR IP D ++D + +A Sbjct: 196 SAVEPFMLNGMSQPNRLQVESYLGSLYATFLDNVSASRKIPADSLRSIADRYAVRDAEDA 255 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 ++ L+D V ++E+ + + +K Sbjct: 256 VRLKLVDAVLYKDELIDEVKKRLNIKDKKK 285 Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 11/187 (5%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSAT 67 T++++ + +S + VA + G I S ++ + ++ DD Sbjct: 287 FSTVSILDYRANSTTSEGEGRVAVLYAEGDIVSGEGESGQIASDKVSRELRKLREDDRVK 346 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 A++ ++SPGGSA A + I+R + K KP+I + + AAS GY IS A++ I A + Sbjct: 347 AVVFRVNSPGGSALASDVIWREVILTKKVKPIIVSMGDYAASGGYYISAAADSIFAERNT 406 Query: 128 LVGSIGVLFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPS-PFSEVNPKAVQMMQDVVDSS 185 + GSIGV P K L DKLG+ VK+ S P + + ++Q V+ + Sbjct: 407 ITGSIGVFGLIPNFKGLLNDKLGIHFDGVKTGAYADLMSAPDRPLTAEERNIIQLEVNKT 466 Query: 186 YHWFVRL 192 Y F + Sbjct: 467 YGSFTKK 473 >gi|254509786|ref|ZP_05121853.1| peptidase, family S49 [Rhodobacteraceae bacterium KLH11] gi|221533497|gb|EEE36485.1| peptidase, family S49 [Rhodobacteraceae bacterium KLH11] Length = 265 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 59/265 (22%), Positives = 115/265 (43%), Gaps = 19/265 (7%) Query: 28 SSHVEDNSPHVARIAIRGQI-------EDSQELIERIERISRDDSATALIVSLSSPGGSA 80 S P VA + + G I ++ L +ER R A+ + ++SPGGS Sbjct: 4 SLPFVKKQPLVAVVRLSGAIGMAGRGSMNANALAPVLERAFRKGKPAAVALEVNSPGGSP 63 Query: 81 YAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 I I+++ + PV V ++AAS GY ++ +++ I A ++S++GSIGV+ Sbjct: 64 VQSSLIGARIRRLADELDIPVYAFVEDVAASGGYWLAASADEIWADDSSVLGSIGVISSG 123 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 FL + GV + + K+ PF+ + V ++ ++ + F+ V R+ Sbjct: 124 FGAHVFLARQGVERRVHTAGQSKSMLDPFAPEKKEDVARLKVLLGDIHENFIDHVKSRRD 183 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 D L +G +W A+++GLID + + Q + + + + K Sbjct: 184 GKLDPEADLFNGEVWLARRAQELGLIDGIAHLKPKMQERFG-----DKVRFRRYGLRKPI 238 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTK 283 W +++ +D I +++ Sbjct: 239 WSRF-----GATVAQDAIAGLEERA 258 >gi|331676489|ref|ZP_08377186.1| minor capsid protein C (GPC) [Escherichia coli H591] gi|331075982|gb|EGI47279.1| minor capsid protein C (GPC) [Escherichia coli H591] Length = 484 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 125 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 184 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 185 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 244 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 245 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 304 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 305 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 340 >gi|331672678|ref|ZP_08373467.1| minor capsid protein C (GPC) [Escherichia coli TA280] gi|331070321|gb|EGI41687.1| minor capsid protein C (GPC) [Escherichia coli TA280] Length = 484 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 125 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 184 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 185 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 244 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 245 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 304 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 305 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 340 >gi|324017645|gb|EGB86864.1| putative signal peptide peptidase SppA [Escherichia coli MS 117-3] Length = 426 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 67 NGIAVLPVSGTLVNRTRALQPHSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 246 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 282 >gi|323190876|gb|EFZ76143.1| minor capsid protein C [Escherichia coli RN587/1] Length = 439 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295 >gi|323168446|gb|EFZ54126.1| minor capsid C protein [Shigella sonnei 53G] Length = 439 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295 >gi|320194281|gb|EFW68913.1| Head-tail preconnector protein GP5 [Escherichia coli WV_060327] Length = 439 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295 >gi|320180588|gb|EFW55518.1| Head-tail preconnector protein GP5 [Shigella boydii ATCC 9905] Length = 439 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295 >gi|320654518|gb|EFX22546.1| Minor capsid protein C from bacteriophage origin [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 439 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295 >gi|300825402|ref|ZP_07105476.1| putative signal peptide peptidase SppA [Escherichia coli MS 119-7] gi|300522129|gb|EFK43198.1| putative signal peptide peptidase SppA [Escherichia coli MS 119-7] Length = 426 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 67 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 246 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 282 >gi|300929060|ref|ZP_07144554.1| putative signal peptide peptidase SppA [Escherichia coli MS 187-1] gi|300462933|gb|EFK26426.1| putative signal peptide peptidase SppA [Escherichia coli MS 187-1] Length = 426 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 67 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 246 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 282 >gi|300897573|ref|ZP_07115983.1| putative signal peptide peptidase SppA [Escherichia coli MS 198-1] gi|300358676|gb|EFJ74546.1| putative signal peptide peptidase SppA [Escherichia coli MS 198-1] Length = 403 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 67 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 246 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 282 >gi|293403702|ref|ZP_06647790.1| head protein [Escherichia coli FVEC1412] gi|298383397|ref|ZP_06992983.1| minor capsid protein C bacteriophage origin [Escherichia coli FVEC1302] gi|291429117|gb|EFF02140.1| head protein [Escherichia coli FVEC1412] gi|298276193|gb|EFI17720.1| minor capsid protein C bacteriophage origin [Escherichia coli FVEC1302] Length = 472 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 113 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 172 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 173 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 232 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 233 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 292 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 293 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 328 >gi|293418637|ref|ZP_06661072.1| capsid protein [Escherichia coli B088] gi|291325165|gb|EFE64580.1| capsid protein [Escherichia coli B088] Length = 439 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295 >gi|291281485|ref|YP_003498303.1| Minor capsid protein C [Escherichia coli O55:H7 str. CB9615] gi|290761358|gb|ADD55319.1| Minor capsid protein C [Escherichia coli O55:H7 str. CB9615] Length = 439 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295 >gi|284921449|emb|CBG34518.1| phage minor capsid protein [contains: capsid assembly protein] [Escherichia coli 042] Length = 439 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295 >gi|218704649|ref|YP_002412168.1| Minor capsid protein [Escherichia coli UMN026] gi|218431746|emb|CAR12628.1| Minor capsid protein [Contains: Capsid assembly protein NU3] from bacteriophage origin [Escherichia coli UMN026] Length = 439 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295 >gi|218703860|ref|YP_002411379.1| Minor capsid protein C from bacteriophage origin [Escherichia coli UMN026] gi|218430957|emb|CAR11831.1| Minor capsid protein C from bacteriophage origin [Escherichia coli UMN026] Length = 481 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 118 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 177 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 178 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 237 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 238 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 297 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 298 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 333 >gi|163741908|ref|ZP_02149297.1| peptidase, family S49 [Phaeobacter gallaeciensis 2.10] gi|161384629|gb|EDQ09009.1| peptidase, family S49 [Phaeobacter gallaeciensis 2.10] Length = 265 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 9/208 (4%) Query: 33 DNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + P VA + + G I + L +ER R A+ ++SPGGS Sbjct: 9 NKPPLVAVVRLNGAIGMAGRGALNDAALGPVLERAFRKGKPAAVAFEINSPGGSPVQSAL 68 Query: 86 IFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I ++++ + P I V ++AAS GY ++ +++ I A E+S++GSIGV+ Sbjct: 69 IGARVRRLSEELKVPTIAFVEDVAASGGYWLAASADEIWADESSILGSIGVISAGFGAHV 128 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + GV + + K+ PF N + V+ ++ ++ + F+ V + R D Sbjct: 129 FLARQGVERRVYTAGRSKSMLDPFRPENAEDVKRLKQLLGDIHDNFIAHVKDRRGDKLDT 188 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + L G IW G A +GLID +G Sbjct: 189 SEDLYTGEIWLGRRAVSLGLIDGIGHLR 216 >gi|74312884|ref|YP_311303.1| putative minor capsid protein [Shigella sonnei Ss046] gi|73856361|gb|AAZ89068.1| putative minor capsid protein precursor [Shigella sonnei Ss046] Length = 426 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 67 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 246 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 282 >gi|260854308|ref|YP_003228199.1| putative minor capsid protein [Escherichia coli O26:H11 str. 11368] gi|260855084|ref|YP_003228975.1| putative head protein/prohead protease [Escherichia coli O26:H11 str. 11368] gi|260855722|ref|YP_003229613.1| putative head protein/prohead protease [Escherichia coli O26:H11 str. 11368] gi|257752957|dbj|BAI24459.1| putative minor capsid protein [Escherichia coli O26:H11 str. 11368] gi|257753733|dbj|BAI25235.1| putative head protein/prohead protease [Escherichia coli O26:H11 str. 11368] gi|257754371|dbj|BAI25873.1| putative head protein/prohead protease [Escherichia coli O26:H11 str. 11368] Length = 439 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPGDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + +P M+ Sbjct: 318 VSATASQADVTGVVPAMEG 336 >gi|319764217|ref|YP_004128154.1| peptidase s49 [Alicycliphilus denitrificans BC] gi|317118778|gb|ADV01267.1| peptidase S49 [Alicycliphilus denitrificans BC] Length = 451 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 87/219 (39%), Gaps = 15/219 (6%) Query: 36 PHVARIAIRGQIE--------------DSQELIERIERISRDDSATALIVSLSSPGGSAY 81 VA +++ G + +L +E + A+++ SPGG A Sbjct: 76 DGVAVLSVSGVLVHRSRLDMAESTFFYGYNDLAADLEDAMANPEVHAVLLVYDSPGGEAQ 135 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + + ++ RKP+ MAASA YL A+ T + GSIGV+ ++ + Sbjct: 136 GAFEYAQRVHAMRGRKPLWAISDGMAASAAYLGGSAAEQFAITSTGIAGSIGVVARHVDL 195 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 LD G+++ + + K + +P+ + + Q +D+ Y F+ V+ R I Sbjct: 196 SRALDAEGITVTHIFAGSHKVDGNPYEPLPESVRKDWQAEIDNLYGMFIDAVATHRGIDV 255 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +TG A L D + + + L AL Sbjct: 256 RAVRATQAAT-YTGQAAVDARLADRIATTDSLIAELAAL 293 >gi|261415381|ref|YP_003249064.1| signal peptide peptidase SppA, 36K type [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371837|gb|ACX74582.1| signal peptide peptidase SppA, 36K type [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327693|gb|ADL26894.1| signal peptide peptidase SppA domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 764 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 54/228 (23%), Positives = 106/228 (46%), Gaps = 5/228 (2%) Query: 27 WSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 ++ VA + I G I+ + +++ + R+ AL+V +SSPGGSA A + Sbjct: 495 IFDESWNHRAKVALLNINGTIDSRMEESVLDNLRRLPGM-GVKALLVRISSPGGSAIASD 553 Query: 85 AIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I+ A++ ++ P++ + S Y I+C ++ I+A ++VGSIG+ Sbjct: 554 KIWGALKNLRRFDIPIVASIGSSGTSGAYYIACGADKIIAEPFAIVGSIGIYGGKIDASG 613 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 + K+G+ + VK++ S +Q+ +D Y+ F +VS++ I Sbjct: 614 LMQKVGLRNEPVKTNDYSDARSFARPWTDTEKAALQEYMDDFYNRFTGVVSQATGIDQAV 673 Query: 204 TLVLSDG-RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 + G R+ G +AK+ GL+ +GG ++ + L +I+ Sbjct: 674 VDSVYGGGRVMVGWKAKEAGLVHSLGGFDDALDEVRKLADIPKSTEIE 721 Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 43/291 (14%), Positives = 105/291 (36%), Gaps = 23/291 (7%) Query: 21 TVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSA 66 ++ + + + S + R+ + ++ + ++ + E + RD +A Sbjct: 234 SIGFHASRNPKASRSAQIVRVPLNMEVSEVEKKFLFFAPSSIGLMKVRNLFEHLLRDPAA 293 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 +++ S G+ E I R ++K+K R ++ + + + + +V + Sbjct: 294 GLVVLDFSGYNGNLAISEEINRYVKKLKARGGLVIAYMDDVRPSVLTAAANVDRVVVEPS 353 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDS 184 + +G+ + K LDKLGV ++ ++ K+ P++ ++ A + ++ + Sbjct: 354 AHFTWLGLGGGITFYKGILDKLGVKVEFLRHGAFKSAVEPYTADSMSVNARENIETLYKD 413 Query: 185 SYHWFVRLVSESRNI-----PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + V+ +K L+ + T AKK GL D + ++V Sbjct: 414 IWELVRMRVAARMKTGTAPVNTEKLDELAQKPVITAIGAKKAGLADTLLYIDQVPAYALK 473 Query: 240 LGVDQSIRK--IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 D + W P F + N L + + + + Sbjct: 474 TFFDIDAPYAGFRTWAPSNTKIFDESWNHRAKVALLNINGTIDSRMEESVL 524 >gi|149203059|ref|ZP_01880030.1| peptidase S49 [Roseovarius sp. TM1035] gi|149143605|gb|EDM31641.1| peptidase S49 [Roseovarius sp. TM1035] Length = 262 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 109/257 (42%), Gaps = 19/257 (7%) Query: 36 PHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 P VA I + G I + + IE+ A+ + ++SPGGS I Sbjct: 9 PTVAVIRLAGMIGGGPRAALSDEAIGPVIEKAFARGKPVAVALVINSPGGSPVQSSLIAA 68 Query: 89 AIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 I+++ K PV V ++AAS GY ++ A++ I +S++GSIGV+ FL Sbjct: 69 RIRRLAEEKKIPVHAFVEDVAASGGYWLAVAADDIWVDASSVLGSIGVISAGFGANEFLA 128 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 + G+ + + K+ PF P+ V ++ +++ + F+ V R Sbjct: 129 RQGIERRIYTAGKSKSTLDPFMPEKPEDVTRLKSILEDIHAAFITHVKSRRGARLRDDPD 188 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 L G W G+ + ++GL D + L L D+ ++ + + + Sbjct: 189 LFTGEFWLGSLSVELGLADGIAHL---LPKLKELYGDK--VQLARYGRKRGIFPRF---- 239 Query: 267 SISSLLEDTIPLMKQTK 283 +++ ED + ++++ Sbjct: 240 -GAAIAEDALSVVEERA 255 >gi|323963686|gb|EGB59201.1| peptidase S49 [Escherichia coli M863] Length = 439 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVAGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295 >gi|299469968|emb|CBN79145.1| signal peptide peptidase [Ectocarpus siliculosus] Length = 915 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 107/226 (47%), Gaps = 15/226 (6%) Query: 33 DNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSPGGS 79 +A + +G I +S + I D S ++V +SSPGG Sbjct: 460 KGDRTIAVLNAQGAIVNSAAPSPGGAINLVISNFRDMASTIIADKSIDGVVVRVSSPGGD 519 Query: 80 AYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A A + ++R +++++ K V+ V ++AAS GY I+ IV E S+ GSIGV+ Sbjct: 520 ASASDLMWREVRRLRESGKVVVASVADVAASGGYYIAMGCERIVCDELSITGSIGVVSAL 579 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L+K+G++ + + S S + +SY+ FV ++SR Sbjct: 580 LKIGELLEKIGITSELISKGKYAELFSARS-FTAEEDAYFGRGAMASYNDFVGKAAKSRR 638 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 +P + + GR+WTGAEAK++GL+D +GG ++ + + + Sbjct: 639 MPLEDMQRRAQGRVWTGAEAKELGLVDDLGGLDKAIEICRDMVDLK 684 Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 33/229 (14%), Positives = 79/229 (34%), Gaps = 5/229 (2%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAG 111 L++ ++ + D A+++ P S A + RA+ KP+ Sbjct: 215 LVKTLKTAAHDPRIKAVVIDFDGPALSMAATMEVRRAMDYFTQSGKPLWGFTESSVDLTL 274 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE--PSPFSE 169 + +A E + IG + + + L+ GV + K Sbjct: 275 LCLMGGCTRRIATEEAYCNVIGFSSEAQFFRKALENFGVEPAVKRIGEFKTFGDAYSRDS 334 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLIDVVG 228 ++ ++ +++++ + L++ S + L D K+ GL+D V Sbjct: 335 MSAAQREVSTNLLETVSGFKTGLLARSSGKSVAEVEALYDNDTPLDVKMLKEFGLLDDVY 394 Query: 229 GQEEVWQSL-YALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 Q+++ + L + ++ + KN L S +++ + Sbjct: 395 YQDQMLKLLTREMASNKRKLMSRARRDVKNGGKLKLGVQSPKMIVDAPL 443 >gi|222112373|ref|YP_002554637.1| peptidase s49 [Acidovorax ebreus TPSY] gi|221731817|gb|ACM34637.1| peptidase S49 [Acidovorax ebreus TPSY] Length = 441 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 15/252 (5%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE------------ 48 ++ +L R + ++ + VA I I G + Sbjct: 23 LDVILSVFGARIGLTDMLVPADYAPTTRPLSPATG-KVAVIPIHGTLVRRTSGLEAVSGL 81 Query: 49 -DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ A+++ + SPGG + + I+ KPV ++MA Sbjct: 82 ASYTSIAVQLDAALASPEVAAILLDVDSPGGESGGVFDLADRIRSASRIKPVWAVANDMA 141 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 SA Y + A++ + A T VGSIGV+ + K GV +V + K + +P Sbjct: 142 FSAAYALVSAASRVFVARTGGVGSIGVIAMHIDQSVKDAKDGVRYTAVFAGERKNDLNPH 201 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 ++ +A +++ VD Y FV V+ R + D G + G +A GL D V Sbjct: 202 EPISGEAHAVLKAEVDRVYDLFVETVARHRGLDADAVRATEAGLFF-GPDAVGAGLADAV 260 Query: 228 GGQEEVWQSLYA 239 GG ++ L Sbjct: 261 GGFDDALSQLTQ 272 >gi|163792424|ref|ZP_02186401.1| proteinase [alpha proteobacterium BAL199] gi|159182129|gb|EDP66638.1| proteinase [alpha proteobacterium BAL199] Length = 287 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 65/268 (24%), Positives = 109/268 (40%), Gaps = 14/268 (5%) Query: 36 PHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 P V+ + +RG I + L +E R S TA+ + ++SPGGS E I Sbjct: 16 PIVSVVPLRGVIGNLGPMNRGLTIDALAPLLEAAFRPRSVTAVALVVNSPGGSPVQSELI 75 Query: 87 FRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I+ + + KPV+ V ++AAS GY ++CA++ + TS++GSI V+ + Sbjct: 76 AGRIRDLAAECDKPVVAFVEDVAASGGYWLACAADEVRVTGTSIIGSIEVISSGFGFQEA 135 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--PYD 202 + KLG+ + + KA PF P V ++ + + F+ V R D Sbjct: 136 IGKLGIERRVHTAGSRKALLDPFQSERPDDVAHLKAIQAEMHERFISWVRSRRGDLLKVD 195 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L +G+ WTGA +GL D G + Y + K K + Sbjct: 196 DEPELLEGKFWTGARGVALGLADGEGELRRTLRERYGARTRFRVLKRKQGLARRFGLAQS 255 Query: 263 LKNLSISSLLED-TIPLMKQTKVQGLWA 289 + L+ + + LW+ Sbjct: 256 EWGSAGELPFAGWADGLIAAVEERALWS 283 >gi|309797023|ref|ZP_07691422.1| putative signal peptide peptidase SppA [Escherichia coli MS 145-7] gi|308119306|gb|EFO56568.1| putative signal peptide peptidase SppA [Escherichia coli MS 145-7] Length = 426 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 67 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPIVDGILLDMDTPGGMVAG 126 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 246 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 247 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 282 >gi|218694224|ref|YP_002401891.1| Minor capsid protein C from bacteriophage origin [Escherichia coli 55989] gi|218350956|emb|CAU96660.1| Minor capsid protein C from bacteriophage origin [Escherichia coli 55989] Length = 484 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 125 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPIVDGILLDMDTPGGMVAG 184 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 185 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 244 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 245 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 304 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 305 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 340 >gi|91214231|ref|NP_918994.2| prohead protease ClpP [Burkholderia phage BcepNazgul] gi|88604924|gb|AAQ63361.2| prohead protease ClpP [Burkholderia phage BcepNazgul] Length = 434 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 108/264 (40%), Gaps = 13/264 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQI-----------EDSQELIERIERISRDDSATALIV 71 + + S +A I ++G + + ++ DD +I+ Sbjct: 62 FQSAADNKPFAFSNGLAIIPLQGTMINRFNYSFGYVTGYNFVRAQLNAALADDDVEGIIL 121 Query: 72 SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 ++S GG A + I ++ KP++ + SA Y I+ A+ +V+ + GS Sbjct: 122 DVNSYGGEAAGCFELADDIYAARDEKPIMAVIDSNCYSAAYAIASAATKVVSTPSGGAGS 181 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IGV+ + + LD +G+ I + + K + +P+ ++ + +Q V++SY FV Sbjct: 182 IGVVAMHVDMSEMLDDMGIKITFIHAGDHKVDGNPYEALSKEVKASIQADVNASYDEFVS 241 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY-ALGVDQSIRKIK 250 LV+ +R + K + + + +A +GLID V + + + L S ++ Sbjct: 242 LVARNRGMDSQKVRD-TQAQTYRADDALNLGLIDAVAKPVDAVAAFFNELSGSTSETEVH 300 Query: 251 DWNPPKNYWFCDLKNLSISSLLED 274 + L +++ D Sbjct: 301 MESTKMELTEEQLAAERRAAIKAD 324 >gi|17545577|ref|NP_518979.1| bacteriophage-like protein [Ralstonia solanacearum GMI1000] gi|17427870|emb|CAD14560.1| probable bacteriophage-related protein [Ralstonia solanacearum GMI1000] Length = 416 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 14/214 (6%) Query: 37 HVARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 +A I I G + + E+++ D A+++ + SPGG + Sbjct: 58 QIAVIPIHGTLVRRTVGLEAESGLASYTAIGEQLDAALADPGIAAILLDVDSPGGESGGV 117 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + I+ KPV ++MA SA Y ++CA++ + + T VGSIGV+ + Sbjct: 118 FDLADRIRVAAAIKPVWAAANDMAFSAAYALACAASRVFVSRTGGVGSIGVIAMHVDQSV 177 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 K GV +V + K + +P + +A +Q V Y FV V R + + Sbjct: 178 KDAKDGVRYTAVFAGARKNDLNPHEPITDEAQAQLQAEVSRIYRLFVATVGSYRGLSAEA 237 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 G + G +A GL D VG ++ L Sbjct: 238 VTATEAGLFF-GQDAVAAGLADAVGTFDDALAQL 270 >gi|15801354|ref|NP_287371.1| putative capsid protein of prophage CP-933X [Escherichia coli O157:H7 EDL933] gi|15830887|ref|NP_309660.1| minor capsid protein [Escherichia coli O157:H7 str. Sakai] gi|15831430|ref|NP_310203.1| minor capsid protein precursor [Escherichia coli O157:H7 str. Sakai] gi|168749764|ref|ZP_02774786.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4113] gi|168752425|ref|ZP_02777447.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4113] gi|168756502|ref|ZP_02781509.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4401] gi|168758740|ref|ZP_02783747.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4401] gi|168762579|ref|ZP_02787586.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4501] gi|168764760|ref|ZP_02789767.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4501] gi|168771031|ref|ZP_02796038.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4486] gi|168771214|ref|ZP_02796221.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4486] gi|168776026|ref|ZP_02801033.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196] gi|168777928|ref|ZP_02802935.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196] gi|168778011|ref|ZP_02803018.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196] gi|168778058|ref|ZP_02803065.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196] gi|168782498|ref|ZP_02807505.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4076] gi|168784221|ref|ZP_02809228.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4076] gi|168784369|ref|ZP_02809376.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4076] gi|168787638|ref|ZP_02812645.1| minor capsid protein C [Escherichia coli O157:H7 str. EC869] gi|168790271|ref|ZP_02815278.1| minor capsid protein C [Escherichia coli O157:H7 str. EC869] gi|168800423|ref|ZP_02825430.1| minor capsid protein C [Escherichia coli O157:H7 str. EC508] gi|168802662|ref|ZP_02827669.1| minor capsid protein C [Escherichia coli O157:H7 str. EC508] gi|195938793|ref|ZP_03084175.1| putative minor capsid protein precursor [Escherichia coli O157:H7 str. EC4024] gi|195939967|ref|ZP_03085349.1| putative minor capsid protein precursor [Escherichia coli O157:H7 str. EC4024] gi|208807522|ref|ZP_03249859.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4206] gi|208810835|ref|ZP_03252668.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4206] gi|208814915|ref|ZP_03256094.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4045] gi|208816407|ref|ZP_03257586.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4045] gi|208821699|ref|ZP_03262019.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4042] gi|208822514|ref|ZP_03262833.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4042] gi|209398131|ref|YP_002270077.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4115] gi|209399799|ref|YP_002270223.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4115] gi|217328033|ref|ZP_03444115.1| minor capsid protein C [Escherichia coli O157:H7 str. TW14588] gi|217329770|ref|ZP_03445847.1| minor capsid protein C [Escherichia coli O157:H7 str. TW14588] gi|254792619|ref|YP_003077456.1| putative capsid protein of prophage CP-933X [Escherichia coli O157:H7 str. TW14359] gi|254792758|ref|YP_003077595.1| putative capsid protein of prophage CP-933X [Escherichia coli O157:H7 str. TW14359] gi|260855340|ref|YP_003229231.1| putative capsid protein/prohead protease [Escherichia coli O26:H11 str. 11368] gi|261227262|ref|ZP_05941543.1| putative capsid protein of prophage CP-933X [Escherichia coli O157:H7 str. FRIK2000] gi|261258730|ref|ZP_05951263.1| putative capsid protein/prohead protease [Escherichia coli O157:H7 str. FRIK966] gi|12514814|gb|AAG55983.1|AE005330_15 putative capsid protein of prophage CP-933X [Escherichia coli O157:H7 str. EDL933] gi|13361097|dbj|BAB35056.1| minor capsid protein [Escherichia coli O157:H7 str. Sakai] gi|13361642|dbj|BAB35599.1| putative minor capsid protein precursor [Escherichia coli O157:H7 str. Sakai] gi|187766859|gb|EDU30703.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196] gi|187766895|gb|EDU30739.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196] gi|187766931|gb|EDU30775.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196] gi|187768547|gb|EDU32391.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196] gi|188013730|gb|EDU51852.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4113] gi|188016014|gb|EDU54136.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4113] gi|188998454|gb|EDU67454.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4076] gi|188998583|gb|EDU67569.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4076] gi|189000028|gb|EDU69014.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4076] gi|189354482|gb|EDU72901.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4401] gi|189356384|gb|EDU74803.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4401] gi|189359977|gb|EDU78396.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4486] gi|189360133|gb|EDU78552.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4486] gi|189365302|gb|EDU83718.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4501] gi|189367179|gb|EDU85595.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4501] gi|189370253|gb|EDU88669.1| minor capsid protein C [Escherichia coli O157:H7 str. EC869] gi|189372400|gb|EDU90816.1| minor capsid protein C [Escherichia coli O157:H7 str. EC869] gi|189375403|gb|EDU93819.1| minor capsid protein C [Escherichia coli O157:H7 str. EC508] gi|189377239|gb|EDU95655.1| minor capsid protein C [Escherichia coli O157:H7 str. EC508] gi|208724341|gb|EDZ74049.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4206] gi|208727323|gb|EDZ76924.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4206] gi|208731563|gb|EDZ80251.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4045] gi|208733055|gb|EDZ81743.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4045] gi|208737999|gb|EDZ85682.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4042] gi|208741822|gb|EDZ89504.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4042] gi|209159531|gb|ACI36964.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4115] gi|209161199|gb|ACI38632.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4115] gi|217317189|gb|EEC25620.1| minor capsid protein C [Escherichia coli O157:H7 str. TW14588] gi|217318460|gb|EEC26886.1| minor capsid protein C [Escherichia coli O157:H7 str. TW14588] gi|254592019|gb|ACT71380.1| putative capsid protein of prophage CP-933X [Escherichia coli O157:H7 str. TW14359] gi|254592158|gb|ACT71519.1| putative capsid protein of prophage CP-933X [Escherichia coli O157:H7 str. TW14359] gi|257753989|dbj|BAI25491.1| putative capsid protein/prohead protease [Escherichia coli O26:H11 str. 11368] gi|320187947|gb|EFW62615.1| Head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC1212] gi|320191964|gb|EFW66610.1| Head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC1212] gi|320638195|gb|EFX07937.1| putative capsid protein/prohead protease [Escherichia coli O157:H7 str. G5101] gi|326338655|gb|EGD62480.1| Head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. 1125] gi|326348089|gb|EGD71798.1| Head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. 1044] Length = 439 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPGDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + +P + Sbjct: 318 VSATASQADVTGVVPATEG 336 >gi|91224322|ref|ZP_01259584.1| Putative capsid protein of prophage [Vibrio alginolyticus 12G01] gi|91190664|gb|EAS76931.1| Putative capsid protein of prophage [Vibrio alginolyticus 12G01] Length = 450 Score = 100 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 98/236 (41%), Gaps = 14/236 (5%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDD 64 V S+ S +A I I G + ++ R+ D Sbjct: 56 VASGFSRTRSSNRSYQVSQGIAIIPIDGSLVHKYGHIKPYSGMTGYDGIMHRLREAVADP 115 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 A+++ +++PGG + I +++ KP+ + ++M SAG +I+ A + + Sbjct: 116 EVKAILLDMNTPGGMVAGCFDLADKIAEMRKIKPIWSLGYDMHCSAGQMIASACSRRLIT 175 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 +T + GS+GV+ + ++ LD+ GV I V + KA+ +P+ + + + Q +S Sbjct: 176 QTGIAGSVGVIMAHTNIEKMLDQQGVEITLVTAGDHKADGNPYQSLPKEVREKWQSEAES 235 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 + F +E + L ++ +++ G A VG + V + Q + Sbjct: 236 TRQMFAGKAAEYMGVDIKTILS-TEAQVYEGQAAVDVGFANEVVNGLDAVQIMAEQ 290 >gi|149913315|ref|ZP_01901848.1| Peptidase U7 [Roseobacter sp. AzwK-3b] gi|149812435|gb|EDM72264.1| Peptidase U7 [Roseobacter sp. AzwK-3b] Length = 474 Score = 100 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 14/209 (6%) Query: 36 PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A I I G + + + +IE +RD S A+ + + S GG Sbjct: 80 NGIAVIEISGVLIHRGGWIGQSSGQTSYEGIAAQIEAAARDPSVRAVALEIDSFGGEVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + ++ ++ KPV V E A SAGY ++ ++ I+ T VGSIGV+ + + Sbjct: 140 VFDLADRLRALRRNKPVWAFVAEHAFSAGYALASQADRILLPRTGAVGSIGVVVMHADLS 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LD+ GV + + S K + +P+ + +Q +D F V+ R+ + Sbjct: 200 SQLDQNGVRVTLIHSGQHKVDGNPYEPLPESVRDDIQREIDVLRFLFAETVAAGRSGRLN 259 Query: 203 KTLVL-SDGRIWTGAEAKKVGLIDVVGGQ 230 + L ++ + GA+A GL D V Sbjct: 260 QDAALATEAATFRGADAVSAGLADEVIDL 288 >gi|288560933|ref|YP_003424419.1| peptidase S49 family [Methanobrevibacter ruminantium M1] gi|288543643|gb|ADC47527.1| peptidase S49 family [Methanobrevibacter ruminantium M1] Length = 285 Score = 100 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 104/242 (42%), Gaps = 14/242 (5%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQ----------ELIERIERISRDDSATALIVSLSSP 76 S++ ++ +A I I I E+ + + +++ + S Sbjct: 30 PFSNLAVDNDEIAVITISDTITYGDNSTSAHTSKKEIESELNDAYSNPKIKGIVLDIDSG 89 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GGS A + I I+K + KP+++ + + Y I+ A++ I A+ +S +G IG+ + Sbjct: 90 GGSLVASDEISDLIKK--SPKPIVSYIGDKGFDEAYQIASATDYIFASSSSSLGGIGLSY 147 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + +K+ K + + + + + Q +VD Y F++ ++E+ Sbjct: 148 IN-TDRYSDEKVTGVFNEKYLKNNKTKSNSKVK-SANDLANAQKMVDQDYTLFIKKIAEN 205 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 RN+ D L+ G+ + G EAKK+GLID +G + + + L + I P K Sbjct: 206 RNLTADYVAELAHGKKYNGNEAKKLGLIDEIGSKSQSIEKAAKLSNATNYTVITYPEPQK 265 Query: 257 NY 258 Sbjct: 266 KL 267 >gi|207725418|ref|YP_002255814.1| bacteriophage-related protein [Ralstonia solanacearum MolK2] gi|206590654|emb|CAQ37616.1| bacteriophage-related protein [Ralstonia solanacearum MolK2] Length = 416 Score = 100 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 50/214 (23%), Positives = 90/214 (42%), Gaps = 14/214 (6%) Query: 37 HVARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 +A I I G + + ++++ D A+++ + SPGG + Sbjct: 58 QIAVIPIHGTLVRRTVGLEAESGLASYTAIGDQLDAALADPGVAAILLDVDSPGGESGGA 117 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + I+ KPV ++MA SA Y ++ A++ + + T VGSIGV+ + Sbjct: 118 FDLADRIRAAAAVKPVWAVANDMAFSAAYALASAASRLFVSRTGGVGSIGVIAMHVDQSV 177 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 + G+ +V + K + +P ++ A +Q VD Y FV V+ +R I + Sbjct: 178 KDAQDGIRYTAVFAGARKNDLNPHEPISDAAQAQLQAEVDRLYGLFVATVANNRGIAAEA 237 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 G + G +A GL D VG ++ L Sbjct: 238 VTATEAGLFF-GQDAVAAGLADDVGTFDDALAQL 270 >gi|94970200|ref|YP_592248.1| peptidase S49 [Candidatus Koribacter versatilis Ellin345] gi|94552250|gb|ABF42174.1| peptidase S49 [Candidatus Koribacter versatilis Ellin345] Length = 781 Score = 100 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 16/227 (7%) Query: 29 SHVEDNSPHVARIAIRGQI---------------EDSQELIERIERISRDDSATALIVSL 73 S V I I G I L + + +A++ + Sbjct: 71 KASPVTSGAVMVIPIYGVIGPKASQFERASSGGGTGIDALTQTFRSALSNPDISAIVFDV 130 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 SPGGS + + I + +K ++ +V AASA Y ++ ++ +V + GSIG Sbjct: 131 DSPGGSVFGIAELADEIYAGRGKKKIVAQVAPRAASAAYWLAASAGEVVVTPSGQAGSIG 190 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V + + LD GV + + K E + ++ +A MQ++VD Y FV+ V Sbjct: 191 VFVAHEDLSKALDMQGVKETLISAGKYKVEGASSQPLSDEARAAMQNMVDQYYGAFVQGV 250 Query: 194 SESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + R + +GR+ + +A ++G++D + ++ +L Sbjct: 251 ARGRAVTAATVRNSFGEGRVVSAQDALQLGMVDRIATLDQTIAALLG 297 >gi|209919254|ref|YP_002293338.1| putative phage capsid structural protein [Escherichia coli SE11] gi|209912513|dbj|BAG77587.1| putative phage capsid structural protein [Escherichia coli SE11] Length = 439 Score = 100 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPGDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D + + Sbjct: 318 VSATASQADVTDVVQATEG 336 >gi|209917788|ref|YP_002291872.1| putative phage minor capsid protein [Escherichia coli SE11] gi|209911047|dbj|BAG76121.1| putative phage minor capsid protein [Escherichia coli SE11] gi|320201852|gb|EFW76428.1| Head-tail preconnector protein GP5 [Escherichia coli EC4100B] gi|323965007|gb|EGB60470.1| peptidase S49 [Escherichia coli M863] Length = 439 Score = 100 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPGDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D + + Sbjct: 318 VSATASQADVTDVVQATEG 336 >gi|153834991|ref|ZP_01987658.1| minor capsid protein C (GPC) [Vibrio harveyi HY01] gi|148868565|gb|EDL67658.1| minor capsid protein C (GPC) [Vibrio harveyi HY01] Length = 450 Score = 100 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 98/236 (41%), Gaps = 14/236 (5%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDD 64 V S+ S +A I I G + ++ R+ D Sbjct: 56 VASGFSRTRSSNRSYQVSQGIAIIPIDGSLVHKYGHIKPYSGMTGYDGIMHRLREAVADP 115 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 A+++ +++PGG + I +++ KP+ + ++M SAG +I+ A + + Sbjct: 116 EVKAILLDMNTPGGMVAGCFDLADKIAEMRKIKPIWSLGYDMHCSAGQMIASACSRRLIT 175 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 +T + GS+GV+ + ++ LD+ GV I V + KA+ +P+ + + + Q +S Sbjct: 176 QTGIAGSVGVIMAHTNIEKMLDQQGVEITLVTAGDHKADGNPYQSLPKEVREKWQSEAES 235 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 + F +E + L ++ +++ G A VG + V + Q + Sbjct: 236 TRQMFAGKAAEYMGVDIKTILS-TEAQVYEGQAAVDVGFANEVVNGLDAVQIMAEQ 290 >gi|213620929|ref|ZP_03373712.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 412 Score = 99.7 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S+ E + + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90 +++ I + D + T +++ L + G+ I +A+ Sbjct: 79 ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ VS +R I + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + DG T A L+D + +V ++L Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300 Score = 56.2 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 9/67 (13%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D +A I G I D +E +I D A+++ ++SPGGS Sbjct: 319 KTPADTGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGS 378 Query: 80 AYAGEAI 86 A E I Sbjct: 379 VNASEVI 385 >gi|320660180|gb|EFX27694.1| putative phage minor capsid protein [Escherichia coli O55:H7 str. USDA 5905] Length = 439 Score = 99.7 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPGDVRETLQSRMDATRRIFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G EA GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D + + Sbjct: 318 VSATASQADVTDVVQATEG 336 >gi|309704860|emb|CBJ04212.1| putative minor capsid protein [Escherichia coli ETEC H10407] Length = 439 Score = 99.7 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPGDVRETLQSRMDATRRMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G EA GL D + + + Sbjct: 260 AVLD-TEAAVYSGQEAIDAGLADELVNSTDAITVMRD 295 >gi|152981533|ref|YP_001354400.1| phage related peptidase [Janthinobacterium sp. Marseille] gi|151281610|gb|ABR90020.1| phage related peptidase [Janthinobacterium sp. Marseille] Length = 406 Score = 99.7 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 14/215 (6%) Query: 38 VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 +A + I G + QEL ++ D + A+++ + S GG + Sbjct: 58 IAVLPIYGTLVRRTVGLEAESGMASYQELATMLDTAVADPNVAAILLDIDSAGGESGGVF 117 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + + RKPV ++MA SA Y I A++ + T VGSIGV+ + Sbjct: 118 DLADRVAAAAKRKPVWALANDMAFSAAYAIGSAASRFIVTRTGGVGSIGVIAMHADQSVK 177 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 K GV +V + K + +P ++ +A +++ V+ Y FV V+ +R + D Sbjct: 178 DAKDGVRYTTVFAGARKNDLNPHEPISDEAHAFLKNEVERVYGLFVETVARNRGVSADAV 237 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 ++ I+ GA+A GL D VG ++V Sbjct: 238 RA-TEASIYYGADAVAAGLADAVGTFDDVLAEFTE 271 >gi|110668977|ref|YP_658788.1| protease IV; endopeptidase IV; signal peptide peptidase [Haloquadratum walsbyi DSM 16790] gi|109626724|emb|CAJ53191.1| Protease IV; endopeptidase IV; probable signal peptide peptidase [Haloquadratum walsbyi DSM 16790] Length = 305 Score = 99.3 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 19/234 (8%) Query: 30 HVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + V+ I + G I S L E + +DS ++++ + S GG+ E ++ Sbjct: 39 QSAQSEGTVSVITVSGVITGSKVDTLSEDLREARINDSIKSVVLKVDSGGGAVAPSERLY 98 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + + PV+ V ++AS Y +N + VGS+GV+ Sbjct: 99 LEVLRTAKEIPVVASVQGVSASGAYYGILPANETFMLSSGQVGSVGVIGAGGTAPVP--- 155 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLV 206 + +++ P KA + V+S FV V E R Sbjct: 156 ----DRIIRTGPDKA-----QPTTEQRR----QQVESLKRQFVNRVVEHRGENITLSREE 202 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 +++ + + G A + GLID +G + + + P F Sbjct: 203 IANAKTYLGPRAAENGLIDQLGTLSVAIDHAAEMAGMEDYDIARKEPPRGGLIF 256 >gi|117926027|ref|YP_866644.1| serine peptidase [Magnetococcus sp. MC-1] gi|117609783|gb|ABK45238.1| protein C, Serine peptidase, MEROPS family S49 [Magnetococcus sp. MC-1] Length = 410 Score = 99.3 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 91/231 (39%), Gaps = 15/231 (6%) Query: 28 SSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLS 74 SS + +A + I G + + E++ + D + A+++ + Sbjct: 53 SSDLMVTPNGIAIVPIHGTLVKRVGAVEAASGLMSYASIEEKLLDAATDPAVRAILMDID 112 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGG + IQ+ KP+ + ++A + S A + I+ +T+ VGSIGV Sbjct: 113 SPGGEVGGVFDLAAMIQEAGQGKPIWALADDAFSAAYLIASQA-HRIIVPQTAGVGSIGV 171 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + + K G S +V + K + S + ++ A +Q VD Y F +V+ Sbjct: 172 IAAHVDESEKDAKEGRSYTTVFAGAHKNDFSSHAPLSDAARFNLQQEVDRLYGMFTGMVA 231 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 RNI G + G A K GL D VG + L L Sbjct: 232 SGRNISETAVRATEAGLFF-GDNAVKAGLADHVGTIRDALAGLTTLIESPK 281 >gi|126458778|ref|YP_001055056.1| peptidase S49 [Pyrobaculum calidifontis JCM 11548] gi|126248499|gb|ABO07590.1| peptidase S49 [Pyrobaculum calidifontis JCM 11548] Length = 612 Score = 99.3 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 87/231 (37%), Gaps = 15/231 (6%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYA 82 S + + + + I D + L++ ++R+ DD +++ ++SPGG+ A Sbjct: 75 VSKLEAKKAAEKEIVVVPVDFAIYDYEVDFLVKYVKRLEFDDRVAGVVLLINSPGGAVGA 134 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E ++ I + K + + AS Y + A+ I A +S VGS+GV+ Sbjct: 135 TERLYSTIAGLNKTKYAVIAG--LGASGAYYTAVAAEKIYATPSSWVGSVGVIALIAPED 192 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 + + P K + V+ + FV V + R Sbjct: 193 YLAEVPDW---IYTTGPWKYYGKDLLALYDD--------VEKTRENFVNAVLKGRGDRLK 241 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 + I+ EA ++GLID +GG + + + ++ + + Sbjct: 242 DLKAVETAEIFRADEALRIGLIDAIGGLWDAVRDMAKELGLKNYTVVDIYE 292 >gi|170020107|ref|YP_001725061.1| peptidase S49 [Escherichia coli ATCC 8739] gi|169755035|gb|ACA77734.1| peptidase S49 [Escherichia coli ATCC 8739] Length = 439 Score = 99.3 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 15/259 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 80 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 140 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K GV I + S K + +P+S + + +Q +D++ F + VS + Sbjct: 200 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQ 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L ++ +++G E GL D + + + +D ++ K Sbjct: 260 AVLD-TEAAVYSGQEVIDAGLADELVNSTDAITVMRD-ALDARKSRLSGGRMTKETQSTT 317 Query: 263 LKNLSISSLLEDTIPLMKQ 281 + + + + D +P + Sbjct: 318 VSATASQADVTDVVPATEG 336 >gi|83648314|ref|YP_436749.1| periplasmic serine protease (ClpP class) [Hahella chejuensis KCTC 2396] gi|83636357|gb|ABC32324.1| Periplasmic serine protease (ClpP class) [Hahella chejuensis KCTC 2396] Length = 407 Score = 99.3 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 59/259 (22%), Positives = 114/259 (44%), Gaps = 15/259 (5%) Query: 32 EDNSPHVARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGG 78 +D++P +A I + G + ++ + ++ D +++ + SPGG Sbjct: 51 KDSAPGIAVIPVHGSLVRRTLGLEAASGLSSYGQIAQSLDAAVADPQVAGILLDIDSPGG 110 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A + I+ V RKPV ++ A SA Y I+ ++ + ++T+ VGS+GV+ + Sbjct: 111 EAGGVFELAERIRAVNARKPVWAHANDSAFSAAYAIAASAGRLSVSQTAGVGSVGVIALH 170 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + G++ ++ + K + SP + ++P+A +Q VD Y FV V++ RN Sbjct: 171 VDQSAKDARDGLAYTALYAGEHKNDLSPHAPLSPEAASSLQAEVDRLYRIFVSQVAQMRN 230 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + D R++ G EA +GL D V ++ Q ++ Y Sbjct: 231 LSEDDVRNTK-ARLFFGEEAVSLGLADAVSSFDQTLSEFTDALRRQGALTPRERRNAHAY 289 Query: 259 WFCDLKNLSISSLLEDTIP 277 K L +S +L + +P Sbjct: 290 P-RSSKELIVSEVLPEALP 307 >gi|159184399|ref|NP_353659.2| proteinase sohB [Agrobacterium tumefaciens str. C58] gi|159139712|gb|AAK86444.2| proteinase sohB [Agrobacterium tumefaciens str. C58] Length = 260 Score = 98.9 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 103/246 (41%), Gaps = 5/246 (2%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEM 106 + +E+ A A+ +SL+SPGGS I+ I+++ + K V+ V ++ Sbjct: 12 NLASYAPLLEKAFAVKDAPAVAISLNSPGGSPVQARMIYNRIRQLAEEKDKKVLIFVEDV 71 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 AAS GY+I+ A + I+A TS+VGSIGV+ L K+GV + + K P Sbjct: 72 AASGGYMIALAGDEIIADPTSIVGSIGVVSGGFGFPEMLRKIGVERRVYTAGENKVILDP 131 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 F + ++ + ++ F+ +V R L G WTG +GLID Sbjct: 132 FQPEKEGDIDYLKSLQVEIHNVFIDMVKMRRGSKLKGDDALFSGLFWTGMRGLDLGLIDG 191 Query: 227 VGGQEEVWQSLYA-LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 +G EV + Y Q I + K L+ L + + + + Sbjct: 192 LGDMREVLRRRYGTKVKLQLISGGRSLFGKKVPGVNMALGLNAERLAAGAVSGLAEVAEE 251 Query: 286 GLWAVW 291 A+W Sbjct: 252 --KALW 255 >gi|304321517|ref|YP_003855160.1| peptidase S49 [Parvularcula bermudensis HTCC2503] gi|303300419|gb|ADM10018.1| peptidase S49 [Parvularcula bermudensis HTCC2503] Length = 280 Score = 98.5 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 56/273 (20%), Positives = 118/273 (43%), Gaps = 21/273 (7%) Query: 31 VEDNSPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAY 81 + P + + + G I + + +E+ + A+++S++SPGGS Sbjct: 12 TPEPPPMIHIVPMEGVIAAAGRSSRSLNLSAVEGALEKAFKTGEPRAVLLSINSPGGSPV 71 Query: 82 AGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 I + ++ + +++ PVI + ++ AS GY+++ A + I A +LVGSIGV+ Sbjct: 72 QSRMILQKVRDLSVEHKVPVIAHIQDVGASGGYMLALAGDEIYADPFALVGSIGVIAGGF 131 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + + +LG+ + + K++ PF +P+ V ++ ++D S+ F+ LV R Sbjct: 132 GLHEAIGRLGIERRVYTAGENKSQLDPFRPEDPRDVAHLKGILDKSHALFIDLVKTRRGD 191 Query: 200 PYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + G W EA+ +GLID V ++ + + + V + ++ Sbjct: 192 RLKGEDKIVFTGDFWIADEAQALGLIDGVEDRDALLKRRFGDRVQSRSFDV----DKRSL 247 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 L + + + + K A+W Sbjct: 248 LSRLLSGTMPGAWRPEAVAAALEDK-----ALW 275 >gi|51245435|ref|YP_065319.1| capsid protein GPC of phage lambda [Desulfotalea psychrophila LSv54] gi|50876472|emb|CAG36312.1| related to capsid protein GPC of phage lambda [Desulfotalea psychrophila LSv54] Length = 433 Score = 98.5 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 53/264 (20%), Positives = 97/264 (36%), Gaps = 19/264 (7%) Query: 30 HVEDNSPHVARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSP 76 D VA I + G + + + I++ D S +++ + S Sbjct: 66 RSSDEEKRVAIIPVIGSLVARNRGFDDGSGLRSYRTIAHEIDQALADQSILGIVLDIDSY 125 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE--TSLVGSIGV 134 GG+A + I++ KP+ + SA I+ A + ++ + +GS+G Sbjct: 126 GGAAAGCARLAGHIKEAGLVKPIYANIDLNCFSAATWIASACTKVFLSDGLDAGMGSVGC 185 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + + +K G +V K + SP ++ MQ VD H F V+ Sbjct: 186 IAIHRDQSVKNEKEGEVYTAVYFGERKNDFSPHQPLSGDLQTKMQAGVDRMGHAFAAAVA 245 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD--- 251 E+R + L + G + G +A GL D V E L A ++ + + Sbjct: 246 ENRGLDLQAVLKMQAGTFY-GQDAITHGLADGVASLTETVALLGAEAEERERASVHNTTG 304 Query: 252 WNPPKNYWFCDLKNLSISSLLEDT 275 KN + +S+LL + Sbjct: 305 LTQAKNRGETMSLSEKLSALLAEE 328 >gi|117926174|ref|YP_866791.1| serine peptidase [Magnetococcus sp. MC-1] gi|117609930|gb|ABK45385.1| protein C, Serine peptidase, MEROPS family S49 [Magnetococcus sp. MC-1] Length = 392 Score = 98.5 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 91/231 (39%), Gaps = 15/231 (6%) Query: 28 SSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLS 74 SS + +A + I G + + E++ + D + A+++ + Sbjct: 35 SSDLMVTPNGIAVVPIHGTLVKRAGAIEAASGLMSYASIEEKLLDAATDPAVRAILMDID 94 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGG + I + KP+ + ++A + S A + I+ +T+ VGSIGV Sbjct: 95 SPGGEVGGVFDLAAMISEAGQGKPIWALADDAFSAAYLIASQA-HRIIVPQTAGVGSIGV 153 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + + K G S +V + K + S + ++ A +Q VD Y F +V+ Sbjct: 154 IAAHVDESEKDAKEGRSYTTVFAGARKNDFSTHAPLSDAARSNLQQEVDRLYGMFTGMVA 213 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 R +P G + G A K GL D VG + L AL Sbjct: 214 SGRGMPEAVVRATEAGLFF-GDNAVKAGLADQVGTIRDALAGLTALIESPK 263 >gi|24214911|ref|NP_712392.1| periplasmic serine protease [Leptospira interrogans serovar Lai str. 56601] gi|24195940|gb|AAN49410.1| periplasmic serine protease [Leptospira interrogans serovar Lai str. 56601] Length = 579 Score = 98.5 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 60/262 (22%), Positives = 119/262 (45%), Gaps = 17/262 (6%) Query: 25 FSWSSHVEDNSPHVARIAIRGQI--------------EDSQELIERIERISRDDSATALI 70 V VA + ++G I + E ++ + ++ S A+I Sbjct: 277 LKNFKLVSQKESVVAVLPLKGNIHHDTIGKGEGKTDGISYYSIKEALKELKKESSVKAVI 336 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + + SPGGSA+ E +++ I K++ +KPV + ++AS GY +SC ++ I A+ +VG Sbjct: 337 LEVDSPGGSAFVSELLYQEILKLQKKKPVYAYIQNISASGGYYLSCGASKIYASPYGIVG 396 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIG + +K KLG++ V + S + ++P++ ++M+ + S F Sbjct: 397 SIGSISIRFDLKNLYSKLGITKDRVGFYKYRDLLSEYGPIHPESKKLMEQEIKESEGLFY 456 Query: 191 RLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 + VS+SR IP G+++T ++ K +ID + + + + + ++ Sbjct: 457 KRVSDSRKIPISDLDKRFGQGKVFTSSQFLKERMIDSITDFLSLLEDIKQDLKVEKVQ-- 514 Query: 250 KDWNPPKNYWFCDLKNLSISSL 271 + P + LK+L L Sbjct: 515 VRYLPSLFTFQSFLKSLKPGFL 536 >gi|294851553|ref|ZP_06792226.1| protease IV [Brucella sp. NVSL 07-0026] gi|294820142|gb|EFG37141.1| protease IV [Brucella sp. NVSL 07-0026] Length = 225 Score = 98.5 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 131/214 (61%), Gaps = 12/214 (5%) Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 ++K+ +KPV+T+V +AASAGY+I+ AS+ IVA +TS+VGSIGVLFQYP + LD LG Sbjct: 1 MRKIATKKPVVTQVGTLAASAGYMIASASDHIVARQTSIVGSIGVLFQYPDLSKLLDTLG 60 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 V ++++KSSP+KAEP+ FS + +A M++ ++ SY WFV +V E R +++ L L++ Sbjct: 61 VKVETIKSSPLKAEPNYFSPASEEAKNMIRSMIMDSYDWFVGIVQERRAFTHEQALALAN 120 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 G ++TG +A LID +GG+ E L G+ + ++ +W P + L++L I Sbjct: 121 GAVFTGRQALDKKLIDGLGGEAEAVAWLQTKGLSDKLPRL-EWKPVGSETGFSLRDLIIH 179 Query: 270 SLL------EDTIPLM-----KQTKVQGLWAVWN 292 + ++ + + + GL +VW+ Sbjct: 180 AGARLLGLPQEADGAIKEIARDRIFLDGLLSVWH 213 >gi|45657584|ref|YP_001670.1| protease IV [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600823|gb|AAS70307.1| protease IV [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 579 Score = 98.5 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 60/262 (22%), Positives = 119/262 (45%), Gaps = 17/262 (6%) Query: 25 FSWSSHVEDNSPHVARIAIRGQI--------------EDSQELIERIERISRDDSATALI 70 V VA + ++G I + E ++ + ++ S A+I Sbjct: 277 LKNFKLVSQKESVVAVLPLKGNIHHDTIGKGEGKTDGISYYSIKEALKELKKESSVKAVI 336 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + + SPGGSA+ E +++ I K++ +KPV + ++AS GY +SC ++ I A+ +VG Sbjct: 337 LEVDSPGGSAFVSELLYQEILKLQKKKPVYAYIQNISASGGYYLSCGASKIYASPYGIVG 396 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIG + +K KLG++ V + S + ++P++ ++M+ + S F Sbjct: 397 SIGSISIRFDLKNLYSKLGITKDRVGFYKYRDLLSEYGPIHPESKKLMEQEIKESEGLFY 456 Query: 191 RLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 + VS+SR IP G+++T ++ K +ID + + + + + ++ Sbjct: 457 KRVSDSRKIPISDLDKRFGQGKVFTSSQFLKERMIDSITDFLSLLEDIKQDLKVEKVQ-- 514 Query: 250 KDWNPPKNYWFCDLKNLSISSL 271 + P + LK+L L Sbjct: 515 VRYLPSLFTFQSFLKSLKPGFL 536 >gi|116331019|ref|YP_800737.1| Signal peptide peptidase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124708|gb|ABJ75979.1| Signal peptide peptidase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 583 Score = 98.5 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 121/269 (44%), Gaps = 17/269 (6%) Query: 36 PHVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 P VA + ++G I + ++ + + S A+++ + SPGGSA+ Sbjct: 286 PVVAVLPLKGTIHHDTIGKGEGKTEGISYYSVRNALKELRDESSVKAVVLEVDSPGGSAF 345 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 E +++ I K++ +KPV V ++AS GY +SC ++ I A+ +VGSIG L + Sbjct: 346 VSELLYQEILKLQKKKPVYAYVQNVSASGGYYLSCGASKIYASPYGIVGSIGSLSLRLDL 405 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 K F KLGV+ V + S + ++P++ ++M+ + S F + V+++R IP Sbjct: 406 KNFYSKLGVTKDRVGFYKYRDLLSEYGPIHPESRKLMRQEIKESEGLFYKRVADARKIPI 465 Query: 202 DKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 GR++T + K +ID + + + + Q + + P + Sbjct: 466 STLDKRFGQGRVFTSSRFLKEKMIDSITDFLGLLEDIKQELKTQRLE--IRYLPTLFTFQ 523 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 L++L L+ + + L + Sbjct: 524 NFLRSLKPGFLINRLDGNFASSFPEILQS 552 >gi|299067579|emb|CBJ38781.1| bacteriophage head-tail preconnector protein GP5 [Contains: Scaffold protein GP6 (Head protein GP6)] [Ralstonia solanacearum CMR15] Length = 416 Score = 98.1 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 50/213 (23%), Positives = 89/213 (41%), Gaps = 14/213 (6%) Query: 38 VARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 +A I I G + + ++++ D A+++ + SPGG + Sbjct: 59 IAVIPIHGTLVRRTVGLEAESGLASYTAIGDQLDAALADQGVAAILLDVDSPGGESSGVF 118 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + I+ KPV ++MA SA Y ++ A++ + + T VGSIGV+ + Sbjct: 119 DLADRIRAAAAVKPVWAVANDMAFSAAYALASAASRVFVSRTGGVGSIGVIAMHVDQSVK 178 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 K G+ +V + K + +P + + +A +Q V Y FV V+ R + + Sbjct: 179 DAKDGIHYTAVFAGARKNDLNPHAPITDEAQAQLQAEVSRIYGLFVATVASYRGLSVEAV 238 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 G + G +A GL D VG E+ L Sbjct: 239 TATEAGLFF-GPDAVTAGLADAVGTFEDALAQL 270 >gi|116328293|ref|YP_798013.1| Signal peptide peptidase (protease IV) [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121037|gb|ABJ79080.1| Signal peptide peptidase (protease IV) [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 582 Score = 98.1 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 121/269 (44%), Gaps = 17/269 (6%) Query: 36 PHVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 P VA + ++G I + ++ + + S A+++ + SPGGSA+ Sbjct: 286 PVVAVLPLKGTIHHDTIGKGEGKTEGISYYSVRNALKELRDESSVKAVVLEVDSPGGSAF 345 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 E +++ I K++ +KPV V ++AS GY +SC ++ I A+ +VGSIG L + Sbjct: 346 VSELLYQEILKLQKKKPVYAYVQNVSASGGYYLSCGASKIYASPYGIVGSIGSLSLRLDL 405 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 K F KLGV+ V + S + ++P++ ++M+ + S F + V+++R IP Sbjct: 406 KNFYSKLGVTKDRVGFYKYRDLLSEYGPIHPESRKLMRQEIKESEGLFYKRVADARKIPI 465 Query: 202 DKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 GR++T + K +ID + + + + Q + + P + Sbjct: 466 STLDKRFGQGRVFTSSRFLKEKMIDSITDFLGLLEDIKQELKTQRLE--IRYLPTLFTFQ 523 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 L++L L+ + + L + Sbjct: 524 NFLRSLKPGFLINRLDGNFASSFPEILQS 552 >gi|304393460|ref|ZP_07375388.1| Na(+)/H(+) antiporter NhaA [Ahrensia sp. R2A130] gi|303294467|gb|EFL88839.1| Na(+)/H(+) antiporter NhaA [Ahrensia sp. R2A130] Length = 294 Score = 98.1 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 112/273 (41%), Gaps = 25/273 (9%) Query: 38 VARIAIRGQIEDSQELIER----------IERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + + + G I + + ++R A + + ++SPGGS I+ Sbjct: 23 IPVVRLEGAIMSGGSALRQNLNLAGCASRLKRAFEMKEAPCVAIIVNSPGGSPVQSRLIY 82 Query: 88 RAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + I+ + ++ K V V + AAS GY+I+CA + I A +S++GSIGV+ + Sbjct: 83 QRIRDLATEHDKKVHVFVEDAAASGGYMIACAGDQITADPSSIIGSIGVVSSGFGFVGAI 142 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 +KLGV + + K+ PF + ++ ++++ + F+ LV SR+ + Sbjct: 143 NKLGVERRVHTAGLNKSVLDPFLPEKAQDIKRLKELQLEIHGVFIDLVKASRSDKLVEDK 202 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 + G WT AK +GLID +G + + K + Sbjct: 203 SMFTGMFWTAGPAKDMGLIDGIGDLRGTLR------GFYGEKTKLKLVEAKKGLLGRSAS 256 Query: 266 LSISSLLEDTIPLMKQTKV-QGLWA------VW 291 + IS L + ++ GL + +W Sbjct: 257 MGISGLGIPVMDANLGHQIADGLLSTAEERALW 289 >gi|294676957|ref|YP_003577572.1| S49 family peptidase [Rhodobacter capsulatus SB 1003] gi|294475777|gb|ADE85165.1| peptidase, S49 family [Rhodobacter capsulatus SB 1003] Length = 316 Score = 98.1 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 81/209 (38%), Gaps = 14/209 (6%) Query: 39 ARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 A I I G + + + +++ D + + + + S GG Sbjct: 28 AVIEIAGTLVHRGAWIGQSSGLTSYEGIAAQLQAAVADPAIRGIALDIDSFGGEVAGAFD 87 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + I+ + +KPV V + A SA Y ++ + I+ T VGSIGV+ + + L Sbjct: 88 MADRIRAARAQKPVQAFVADHALSAAYALASQAGRIILPRTGAVGSIGVVAMHSDMSGAL 147 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 D+ G+++ + + K + +P+ + + ++ F V+E R D + Sbjct: 148 DQKGIAVTLIHAGARKVDANPYQPLPETIRARIAGELEDLRQLFAETVAEGRGRRLDTSR 207 Query: 206 VLSD-GRIWTGAEAKKVGLIDVVGGQEEV 233 L ++ G A GL D V Sbjct: 208 ALDTEAAVFRGEAAVFAGLADEVADPVTA 236 >gi|213584071|ref|ZP_03365897.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 310 Score = 98.1 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 40/282 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S+ E + + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE-AIFRAI 90 +++ I + D + T +++ L + G+ I +A+ Sbjct: 79 ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKAL 138 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ ++ + V E + Y ++ +N I + V G Y K LDKL V Sbjct: 139 REFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKV 198 Query: 151 SIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT---- 204 S + K+ PF +++P A + + + ++ VS +R I + Sbjct: 199 STHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGA 258 Query: 205 LVLSDGRI----WTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + DG T A L+D + +V ++L Sbjct: 259 QAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFG 300 >gi|75676773|ref|YP_319194.1| peptidase S49 [Nitrobacter winogradskyi Nb-255] gi|74421643|gb|ABA05842.1| peptidase S49 [Nitrobacter winogradskyi Nb-255] Length = 292 Score = 98.1 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 63/268 (23%), Positives = 109/268 (40%), Gaps = 17/268 (6%) Query: 38 VARIAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 V + + G I + +ER A A+ + ++SPGGS I+ Sbjct: 23 VPVVRLSGVIGAVTPLRPGMTLAGVARTLERAFAVADAKAVALVVNSPGGSPVQSRQIYL 82 Query: 89 AIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 I+++ K PV+ V ++AAS GY+I+CA + I +S++GSIGV+ + Sbjct: 83 RIRQLSREKEIPVLVFVEDVAASGGYMIACAGDEIFCDPSSILGSIGVVGGGFGFTELIR 142 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 K+GV + + KA PF NP V ++ + + F+ LV SR Sbjct: 143 KIGVERRLYTAGEHKATLDPFLPENPDDVARLKAIQREIHATFIELVKASRGGRLKGADD 202 Query: 207 -LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L G W G + +GL D +G ++ + D+ + + K Sbjct: 203 LLFTGEYWAGERSVALGLADGIGDLRSTLRARF---GDKVSTPLIAPSTGLLSGLLGRKA 259 Query: 266 LSISSLLEDTIPLMKQTKVQGL--WAVW 291 + + L+ + M + L A+W Sbjct: 260 GAGTLTLQGGMAGMPDELISALETRAIW 287 >gi|330818852|ref|YP_004351069.1| signal peptide peptidase SppA, 36K type [Burkholderia gladioli BSR3] gi|327374394|gb|AEA65746.1| signal peptide peptidase SppA, 36K type [Burkholderia gladioli BSR3] Length = 318 Score = 97.8 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 106/243 (43%), Gaps = 9/243 (3%) Query: 33 DNSPHVARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 + P +A + + G + + ++ + D A+ + + S GGS E I Sbjct: 64 SHGPELAVVHLSGNVGTVSARADLVVPALREAFDSDKVRAIALMIDSGGGSPIDAERIDD 123 Query: 89 AIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 A+ +K + KPVI ++ + ASA YL++ S+ ++A SLVGSIG + + L Sbjct: 124 ALAALKKQHPKPVIAVINSLGASAAYLVAMHSDEVMAGRFSLVGSIGAVIESWDFSGALG 183 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 ++ V + S +KA +P+ P A Q +V+ F+ + +R K + Sbjct: 184 RVDVKQRVYASGALKAMLNPYIPATPAADDKAQALVNVLAGEFLGELERTRGAKLSKDVK 243 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 G +W G AK++GL+D VG E++ L + D+ P + L Sbjct: 244 YDTGEVWDGEAAKRIGLVDTVGTIEDLQVRLQQQ---YQGIHVHDFGPNASPATAGLSAS 300 Query: 267 SIS 269 + Sbjct: 301 VAA 303 >gi|53803155|ref|YP_115065.1| prophage LambdaMc01, U7 family peptidase [Methylococcus capsulatus str. Bath] gi|53756916|gb|AAU91207.1| prophage LambdaMc01, peptidase, U7 family [Methylococcus capsulatus str. Bath] Length = 408 Score = 97.8 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 14/229 (6%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIE-------------DSQELIERIERISRDDSATALI 70 + + +A I + G + L +++ A++ Sbjct: 45 FAPPMRAAPAATQRIAVIPVHGTLVRRTVGLEAESGLASYAGLAAQLDAAVASAQVDAIL 104 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + + SPGG + + I+ KPV ++MA SA Y ++ A++ + + T VG Sbjct: 105 LDIDSPGGESGGVFDLADRIRAAAAVKPVWAVANDMAFSAAYALASAASKVFVSRTGGVG 164 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ + K GV +V + K + +P ++ +A ++Q VD Y FV Sbjct: 165 SIGVIAMHVDQSAKDAKDGVRYTAVFAGERKNDLNPHEPISDEAHALLQAEVDRVYRLFV 224 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 V+ R + G + G +A GL D VG ++ L Sbjct: 225 DTVARHRGLDARAIEATEAGLFF-GQDAVTAGLADAVGTFDDALSQLTE 272 >gi|9630469|ref|NP_046900.1| gp5 [Enterobacteria phage N15] gi|3192688|gb|AAC19041.1| gp5 [Enterobacteria phage N15] Length = 447 Score = 97.8 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 91/227 (40%), Gaps = 14/227 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 VA + + G + +I R+++ D +++ + +PGG Sbjct: 82 NGVAVLPVSGTLVSKTRSLQPYSGMTGYNGIIARLQQAISDPGVDGILLDMDTPGGMVSG 141 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I ++++ KP+ ++M SAG LI+ +++ + +T+ GSIGV+ + Sbjct: 142 AFDCADIIARMRDIKPIWALANDMNCSAGQLIASSASRRLVTQTARTGSIGVMMAHSNYG 201 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L GV + + S K + +P+ ++ Q +D++ F VS + Sbjct: 202 AALKTNGVEVSLIYSGDHKVDGNPYEKLPEDVRADFQTRIDATRQMFAEKVSAYTGMSVQ 261 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 L ++ +++G E+ GL D + + + + I Sbjct: 262 DVLD-TEAAVFSGQESVDNGLADELVNNTDALGVMREALDRRKKITI 307 >gi|260914078|ref|ZP_05920551.1| S49 family peptidase [Pasteurella dagmatis ATCC 43325] gi|260631711|gb|EEX49889.1| S49 family peptidase [Pasteurella dagmatis ATCC 43325] Length = 351 Score = 97.4 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 51/268 (19%), Positives = 109/268 (40%), Gaps = 18/268 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAY 81 + + PH+ + +G I S+ E+ I +D +++ L SPGG + Sbjct: 95 GEFINERKPHLYVLNFKGDISASETTALREEISAIIGVAQPEDE---VLLRLESPGGVVH 151 Query: 82 AGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + ++K V ++AAS GY+++C ++ IVAA +++GS+GV+ Q P Sbjct: 152 GYGLAASQLARLKKHNIKLTIAVDKVAASGGYMMACVADKIVAAPFAILGSVGVVAQIPN 211 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + L K V + + + K + E K Q Q ++ ++ F + V+++R P Sbjct: 212 IHRLLKKHDVDVDVMTAGEYKRTVTLLGENTEKGKQKFQQELEETHDLFKQFVAQNR--P 269 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 + ++ G W G +A ++ L+D + +++ +K+ Sbjct: 270 HLDVNKIATGEHWFGQQALELNLVDEIATSDDLILDAIK------TKKVVSLKYQTKKSL 323 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + ++ + + L Sbjct: 324 IQKIGMQAEESVDGVLLRWLSRNNRQLL 351 >gi|14189731|gb|AAK54346.1| probe 6 protein [Chlamydomonas reinhardtii] Length = 721 Score = 97.4 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 100/264 (37%), Gaps = 60/264 (22%) Query: 35 SPHVARIAIRGQIE--------------------DSQELIERIERISRDDSATALIVSLS 74 P +A + + G I D+ +L+ + I D+ A++V ++ Sbjct: 405 EPCIAVVTVSGTIVQGPVPPGSLAASNQQQQQVVDAAKLVADLRTIMDDNLVRAVVVRVN 464 Query: 75 SPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 SPGGSA A ++I R +Q++K K V+ + ++AA Y I+ A+N +VA ++ G IG Sbjct: 465 SPGGSALASDSIRRELQRLKTLGKTVVVSMGDVAAGGAYYIASAANAVVAQPGTVTGGIG 524 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 L + V V Sbjct: 525 AAENKTVKAAPLKHVQ-------------------------------------EELVGQV 547 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 ++SR + L+ GR++TG +A +GL+D +GG EE AL + + + Sbjct: 548 AKSRGRAMWEMQQLAHGRVYTGRQAYDIGLVDQLGGLEEAISHAKALADLEEDVSV--YE 605 Query: 254 PPKNYWFCDLKNLSISSLLEDTIP 277 P +L S ++ Sbjct: 606 HPLRRLPLELTLFKRSGIVAGAAG 629 >gi|254454366|ref|ZP_05067803.1| peptidase U7 [Octadecabacter antarcticus 238] gi|198268772|gb|EDY93042.1| peptidase U7 [Octadecabacter antarcticus 238] Length = 479 Score = 97.0 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 14/205 (6%) Query: 36 PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A I I G + + + +I+ D + + + + S GG Sbjct: 81 DGIAVIEISGVLIHRGGWIGQSSGQTSYEGIAAQIDAAGNDPAVRGIALEIDSFGGEVAG 140 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + I+ ++ KPV + V E A SAGY ++ ++ I+ T VGSIGV+ + + Sbjct: 141 VFDLADRIRAIRATKPVWSFVAEHAFSAGYALASQADRILLPRTGAVGSIGVVVMHADMS 200 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LD+ G+ + + S K + +P+S + +Q +D F V+ R Sbjct: 201 GQLDQDGMRVTLIHSGEHKVDGNPYSPLPDGVRADIQGEIDVLRFLFAETVAAGRAGRLS 260 Query: 203 KTLVLSD-GRIWTGAEAKKVGLIDV 226 + L+ + GA+A GL D Sbjct: 261 QEAALATKAATYRGADAVAAGLADE 285 >gi|313618717|gb|EFR90640.1| putative signal peptide peptidase SppA [Listeria innocua FSL S4-378] Length = 206 Score = 97.0 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 56/201 (27%), Positives = 98/201 (48%), Gaps = 3/201 (1%) Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + + P + MAAS GY IS ++ I A++ +L GS+GV+ Q + KLGVS Sbjct: 4 ERKIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGVIMQGYDYSELMKKLGVSDN 63 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 ++KS K S + ++MQ ++D SY+ FV++V+ R + ++ ++DGRI+ Sbjct: 64 TIKSGAYKDIMSGTRPMTDDEKKIMQSMIDDSYNEFVKVVATGRGMSEEQVRKIADGRIY 123 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS---S 270 G +AK+ GLID G QE+ ++L + I+ P + +S + Sbjct: 124 DGRQAKENGLIDAFGYQEDALEALKKEKDLKDATVIQYDAPESFSSLFSVAAQKMSGQNA 183 Query: 271 LLEDTIPLMKQTKVQGLWAVW 291 + I L K + ++ Sbjct: 184 DITQLIKLTGTLKAPRMMYLY 204 >gi|118593769|ref|ZP_01551138.1| Peptidase U7 [Stappia aggregata IAM 12614] gi|118433679|gb|EAV40342.1| Peptidase U7 [Stappia aggregata IAM 12614] Length = 294 Score = 97.0 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 15/223 (6%) Query: 35 SPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 S + A I + G + + + +++ I+ D+ +I+ ++S GG A Sbjct: 70 SGNTALITVDGSLVNRGAWIGTNSGLTSYEGIAAQVDDIAADNDIRNVIIDMNSYGGEAT 129 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + I+K+++ K VI V+++AASAGY I+ A++ IV + TSLVGSIGV+ + Sbjct: 130 GMSTLAAKIRKLRSTKTVIAVVNDVAASAGYGIASAADEIVVSPTSLVGSIGVVMLHLDR 189 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN-IP 200 L+ G+ + + K + + F ++ + MQ V + Y F+ V R+ Sbjct: 190 SNELEAKGIKPTLIHAGAKKVDGNSFEPLSDNVREDMQKDVMAFYADFLNTVEAGRSSWR 249 Query: 201 YDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 ++ G EA GL D +G EEV L Sbjct: 250 LSADKARKTEADVFIGNEAISAGLADRLGTLEEVLAELAPTKG 292 >gi|117926098|ref|YP_866715.1| serine peptidase [Magnetococcus sp. MC-1] gi|117609854|gb|ABK45309.1| protein C, Serine peptidase, MEROPS family S49 [Magnetococcus sp. MC-1] Length = 433 Score = 97.0 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 15/223 (6%) Query: 28 SSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLS 74 SS + +A + I G + + E++ + D + A+++ + Sbjct: 51 SSDLMVTPNGIAIVPIHGTLVKRVGAVEAASGLMSYASIEEKLLDAATDPAVRAILMDID 110 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGG + IQ+ KP+ + ++A + S A + I+ +T+ VGSIGV Sbjct: 111 SPGGEVGGVFDLAAMIQEAGQGKPIWALADDAFSAAYLIASQA-HRIIVPQTAGVGSIGV 169 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + + K G S +V + K + S + ++ A +Q VD Y F +V+ Sbjct: 170 IAAHVDESEKDAKEGRSYTTVFAGARKNDFSSHAPLSDAARFNLQQEVDRLYGMFTGMVA 229 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 R +P G + G+ A GL D VG + L Sbjct: 230 SGRGMPEAAVRATEAGLFF-GSNAVSSGLADQVGTIRDALAGL 271 >gi|156974266|ref|YP_001445173.1| hypothetical protein VIBHAR_01981 [Vibrio harveyi ATCC BAA-1116] gi|156525860|gb|ABU70946.1| hypothetical protein VIBHAR_01981 [Vibrio harveyi ATCC BAA-1116] Length = 450 Score = 96.6 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 97/236 (41%), Gaps = 14/236 (5%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDD 64 V S S +A I I G + ++ R+ D Sbjct: 56 VASGFSRTRSGSRSYQVSQGIAIIPIDGSLVHKYGHIKPYSGMTGYDGIMHRLREAVADP 115 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 A+++ +++PGG + I +++ KP+ + ++M SAG +I+ A + + Sbjct: 116 EVKAMLLDMNTPGGMVAGCFDLADKIAEMRKIKPIWSLGYDMHCSAGQMIASACSRRLIT 175 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 +T + GS+GV+ + ++ LD+ GV I V + KA+ +P+ + + + Q +S Sbjct: 176 QTGIAGSVGVIMAHTNIEKMLDQQGVEITLVTAGDHKADGNPYQSLPREVREKWQSEAES 235 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 + F +E + L ++ +++ G A VG + V + Q + Sbjct: 236 TRQMFAGKAAEYMGVDIKTILS-TEAQVYEGQAAVDVGFANEVVNGLDAVQIMTEQ 290 >gi|170080914|ref|YP_001730234.1| head protein [Escherichia coli str. K-12 substr. DH10B] gi|169888749|gb|ACB02456.1| head protein [Escherichia coli str. K-12 substr. DH10B] gi|312019774|emb|CBH95056.1| gpC [Enterobacteria phage phi80] Length = 447 Score = 96.6 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 89/217 (41%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ D +++ + +PGG Sbjct: 82 NGIAVLPVSGTLVSKTRALQPYSGMTGYNGIIARLQQAISDPGVDGILLDMDTPGGMVSG 141 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I ++++ KP+ ++M SAG LI+ +++ + +T+ GSIGV+ + Sbjct: 142 AFDCADIIARMRDIKPIWALANDMNCSAGQLIASSASRRLVTQTARTGSIGVMMAHSNYG 201 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L GV + + S K + +P+ ++ Q +D++ F VS + Sbjct: 202 AALKTNGVEVTLIYSGDRKVDGNPYEKLPKDVRADFQTRIDATRQMFAEKVSAYTGMSVQ 261 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G E+ GL D + + + Sbjct: 262 DVLD-TEAAVFSGQESLDNGLADELVNNTDALGVMRE 297 >gi|46402091|ref|YP_006585.1| putative head maturation protease [Klebsiella phage phiKO2] gi|40218235|gb|AAR83021.1| putative head maturation protease [Klebsiella phage phiKO2] Length = 306 Score = 96.6 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 101/236 (42%), Gaps = 15/236 (6%) Query: 26 SWSSHVEDNSPHVARIAIRG--------------QIEDSQELIERIERISRDDSATALIV 71 + +S + VA I + G ++ + + ++ D S + +++ Sbjct: 56 ASASEQVQPAGGVAVIPVHGLLVARRGQITQACTELTSYERIRSQLTAALNDPSISEIVL 115 Query: 72 SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 ++S GG+A + + I + + KP+ V+ A SA Y I+ A + I+ ++TS VGS Sbjct: 116 DINSGGGAAVGCKELADYIYQSRETKPITAIVNYNAFSAAYFIASACSKIIVSQTSGVGS 175 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IGV+ ++ +K+G++ ++ K + ++ +A M Q ++D Y F Sbjct: 176 IGVIMEHLDTSKLEEKMGLTFTTIFRGDNKNNGTQHEPLSEEAQAMFQGMIDEMYETFTG 235 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 V+E R + + G + G A GL D + + ++ A + Sbjct: 236 SVAEYRGLDRQVVVDTQAGLYF-GPGAVSAGLADEISDPQSAINAIAAKYKQPRQK 290 >gi|311694689|gb|ADP97562.1| sohB protein, peptidase U7 family [marine bacterium HP15] Length = 353 Score = 96.6 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 108/252 (42%), Gaps = 13/252 (5%) Query: 27 WSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISR--DDSATALIVSLSSPGGSAYA 82 + +D+ V + G I D+ L I + D +++ L S GG ++ Sbjct: 94 NTDEQDDSRGRVYVLDFDGDIKASDTDPLRRAITAVLSIADPEKDEVVIRLESGGGLVHS 153 Query: 83 GEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + +++++ +T ++AAS GY+++C ++ IVA+ +++GSIGV+ Q P Sbjct: 154 YGLAAAQLDRIRSKGLRLTACVDKVAASGGYMMACVADRIVASPFAILGSIGVVAQLPNF 213 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 FL K V + + + K + F E K Q + ++ ++ F VSE R P Sbjct: 214 HRFLKKNDVDFEVLTAGEHKRTMTIFGENTDKGRQKFLEDLEDTHGLFKEYVSERR--PD 271 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 +++G IW G A +V LID + +E + + Sbjct: 272 LDIAAVANGDIWFGKRALEVKLIDEIKTSDEYLIEACDRA------DVVSVAYQRKRTLP 325 Query: 262 DLKNLSISSLLE 273 + L+ SS LE Sbjct: 326 EKLGLATSSALE 337 >gi|163745636|ref|ZP_02152996.1| peptidase, family S49, putative [Oceanibulbus indolifex HEL-45] gi|161382454|gb|EDQ06863.1| peptidase, family S49, putative [Oceanibulbus indolifex HEL-45] Length = 244 Score = 96.6 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 7/218 (3%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV--ITEV 103 + + + IER A+ + ++SPGGS I I+++ K + I V Sbjct: 8 AVLNDATMGPVIERAFAKGKPAAVALEINSPGGSPVQSSLIGARIRRLSEEKNIPVIAFV 67 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 ++AAS GY ++ A++ I A +S+VGSIGV+ V F+ + GV + + K+ Sbjct: 68 EDVAASGGYWLAAAADEIYADPSSVVGSIGVISASFGVHEFIREHGVERRVYTAGQSKSM 127 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 PF NP+ V ++ +++ + F+ V R + L G IW A ++GL Sbjct: 128 LDPFRPENPEDVARLKVLLEDIHENFIGHVKTRRAGKLPEGQDLFTGEIWLAKRAAELGL 187 Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ID +G + + + + K++ + + Sbjct: 188 IDGIGHLKPLLKERFG-----EKVKLRRYGVKRGLLSR 220 >gi|83645660|ref|YP_434095.1| periplasmic serine protease (ClpP class) [Hahella chejuensis KCTC 2396] gi|83633703|gb|ABC29670.1| Periplasmic serine protease (ClpP class) [Hahella chejuensis KCTC 2396] Length = 427 Score = 96.6 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 44/253 (17%), Positives = 97/253 (38%), Gaps = 15/253 (5%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 VA + + G + LI RI D +++ + SPGG Sbjct: 76 DGVAIVPVSGTLVHKFGYLRPTSGMTGYDGLIARINDAVGDPEVRGILLDMDSPGGEVAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +KP+ + ++MA SA + I+ A++ + ++ + GS+GV+ + + Sbjct: 136 CFDTTAMIAAYAKQKPIWSLTYDMACSACFAIASATSRRLITQSGVAGSVGVIMAHVSRQ 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L +G + + S KAE +P+ ++ + + Q + + F +V+ + + + Sbjct: 196 EELAAMGRKVTLIYSGKYKAEGNPYEDLPEETLSRFQAEMHTLREQFAGIVATNTGLSIE 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA-LGVDQSIRKIKDWNPPKNYWFC 261 + ++ +++ G A VG + E L S + + + Sbjct: 256 AVMS-TEAQVYRGQAAIDVGFAHEIVNGHEAVGIFSEYLKTTNSNKGVVYMTTEQTQPVA 314 Query: 262 DLKNLSISSLLED 274 D+ + E+ Sbjct: 315 DVAKERAQAATEE 327 >gi|22299153|ref|NP_682400.1| protease IV-like protein [Thermosynechococcus elongatus BP-1] gi|22295335|dbj|BAC09162.1| tlr1610 [Thermosynechococcus elongatus BP-1] Length = 369 Score = 96.2 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 57/295 (19%), Positives = 117/295 (39%), Gaps = 39/295 (13%) Query: 13 VMLSLVTLTVVYFSWSSH------VEDNSPHVARIAIRGQIEDSQ--------------- 51 V +L+ + + S +S E + + +I I G I S Sbjct: 39 VFFALLGILLAPASETSPYEHISGKESSRDRILQIDIAGPILGSPQSEEDIFFAPLVGVT 98 Query: 52 ---ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEM 106 E+ ++ ++D + A+ V++ +PGG+ + +AI I++ + +KPV + + Sbjct: 99 YGYEVQRQLAEAAKDKTIQAVFVNIKTPGGTIFGSQAIAEGIRRYRKATQKPVYAFIEGI 158 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV------------SIKS 154 AAS G ++ I A S+VGSIG+L + L ++ Sbjct: 159 AASGGVWAMVTADQIYADHGSMVGSIGILGPSVFYYDRPTSLDNGLLRGGVTANSIEERT 218 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 + + K +PF + P+ +Q++Q ++ Y F+ V+++R I I++ Sbjct: 219 LSAGRSKDIGNPFRRLTPQEIQVLQAGLEQEYTKFINHVAQARGIDPSVIRNEMGAMIFS 278 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQS-IRKIKDWNPPKNYWFCDLKNLSI 268 +A++ LID + E +L + I + ++ L + Sbjct: 279 NDQAQRYRLIDGTRSRSETLNALARAANLKEGEYAIVRFRRDRSPLINQLFGVQS 333 >gi|313608567|gb|EFR84447.1| putative signal peptide peptidase SppA [Listeria monocytogenes FSL F2-208] Length = 203 Score = 96.2 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 3/201 (1%) Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + P + MAAS GY IS ++ I A++ S+GV+ Q F+ KLGVS Sbjct: 1 ERNIPFYVSMGSMAASGGYYISAPADKIFASKEXXXXSLGVIMQGYDYSEFMKKLGVSDN 60 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 ++KS K S + ++MQ ++D SY+ FV++V++ R + +K ++DGRI+ Sbjct: 61 TIKSGEYKDIMSGTRPMTEDEKKIMQSMIDDSYNEFVKVVAKGRGMSAEKVRKIADGRIY 120 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS---S 270 G +AK+ GLID G QE+ ++L I+ P + IS + Sbjct: 121 DGRQAKENGLIDEFGYQEDALEALKKEQGLADATVIQYDAPEDFSSLFSVAAQKISGQNA 180 Query: 271 LLEDTIPLMKQTKVQGLWAVW 291 + I L K + ++ Sbjct: 181 DISQLIKLTGTLKAPRMMYLY 201 >gi|299145691|ref|ZP_07038759.1| putative signal peptide peptidase SppA [Bacteroides sp. 3_1_23] gi|298516182|gb|EFI40063.1| putative signal peptide peptidase SppA [Bacteroides sp. 3_1_23] Length = 304 Score = 96.2 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 105/240 (43%), Gaps = 12/240 (5%) Query: 26 SWSSHVEDNSPHVARIAIRGQIE--------DSQELIERIERISRDDSATALIVSLSSPG 77 + + VA I ++G + + E+ E + + + + +++ + S G Sbjct: 63 TGHDFSDAPQDSVAIIGLQGSMLKYGSYCSYGTTEVAEMVNQAADSPKISGILLDIDSGG 122 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET--SLVGSIGVL 135 GS A + AIQ + +K + ++ ASA Y ++C + I+A+ T S GSIGV+ Sbjct: 123 GSVDAIAPLVDAIQYAQKKKKCVVAYCDLCASAAYYVACYCDEIIASNTISSEFGSIGVM 182 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP-KAVQMMQDVVDSSYHWFVRLVS 194 +P + + +GV + ++ S+ + PF K + + +D F V Sbjct: 183 MSFPDYAKYYENVGVKVHTIYSNLSSYKNGPFEAAKEGKYDAIKTEELDPLARGFQEAVK 242 Query: 195 ESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 R + +T + GR++ +AK+ GLID VG ++ + L D + + + Sbjct: 243 NKRGSKLNLETEGIIAGRMFYANDAKENGLIDSVGTRDFALGRVRELRRDAYVNEYINSK 302 >gi|308231618|ref|ZP_07663896.1| peptidase, S49 (protease IV) family [Mycobacterium tuberculosis SUMu001] gi|308369980|ref|ZP_07666835.1| peptidase, S49 (protease IV) family [Mycobacterium tuberculosis SUMu002] gi|308216724|gb|EFO76123.1| peptidase, S49 (protease IV) family [Mycobacterium tuberculosis SUMu001] gi|308325734|gb|EFP14585.1| peptidase, S49 (protease IV) family [Mycobacterium tuberculosis SUMu002] Length = 313 Score = 96.2 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 2/197 (1%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 ++ + I R + D LI + P A A + + AI KP + + Sbjct: 67 RDAVAAIHRAAEDPRVAGLIARVQLPPSPAGAVQELREAIAAFSAVKPSLAWAETYPGTL 126 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE- 169 Y ++ A + + VG +G +++ L K G+ + V K+ + F+E Sbjct: 127 SYYLASAFGEVWMQPSGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTED 186 Query: 170 -VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 + + ++DS + V++SRNI D L+D +A GLID +G Sbjct: 187 GFTDAHREAVTRMLDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIG 246 Query: 229 GQEEVWQSLYALGVDQS 245 +++ + + L + Sbjct: 247 FRDQAYARMAELVGVEK 263 >gi|170770009|ref|ZP_02904462.1| head-tail preconnector protein GP5 [Escherichia albertii TW07627] gi|170770149|ref|ZP_02904602.1| head-tail preconnector protein GP5 [Escherichia albertii TW07627] gi|170120975|gb|EDS89906.1| head-tail preconnector protein GP5 [Escherichia albertii TW07627] gi|170121075|gb|EDS90006.1| head-tail preconnector protein GP5 [Escherichia albertii TW07627] Length = 501 Score = 96.2 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 91/217 (41%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + + K + + F + + Q MQ VD+++ F V+ + + Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRVDAAHRMFAEKVAMYTGLSVE 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 ++ ++ G A K GL D + + + A Sbjct: 256 AV-TGTEAAVFEGQSAIKAGLADELINASDAISVMAA 291 >gi|46201147|ref|ZP_00055675.2| COG0616: Periplasmic serine proteases (ClpP class) [Magnetospirillum magnetotacticum MS-1] Length = 400 Score = 96.2 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 16/225 (7%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLS 74 + + +A I + G + + ++ E IE + D + A+++ + Sbjct: 44 APDTQVTPDGIAIIPVMGSLVNRSSYLGAASGLSSYSDIGEDIEAAATDPNVRAILLDID 103 Query: 75 SPGGSAYAGEAIFRAIQ--KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 SPGG + IQ + + KP+ E A SA Y I C ++ +T VGS+ Sbjct: 104 SPGGEVGGLFDLVDQIQVIRSQCGKPIWAVADEAALSAAYAIGCVADRFYVTQTGEVGSV 163 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GV+ + + G++ + + K + + ++ A +Q VD+ Y F+ L Sbjct: 164 GVVAVHLDESGADSQAGLTWSFIHAGAAKVDGNSHQPLSDTARATLQADVDALYTRFIDL 223 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 V++ R D ++ ++ G +A +GL D VG L Sbjct: 224 VAKCRKKAPDAIRA-TEANVYRGDQAVAMGLADKVGTLRVALADL 267 >gi|117924626|ref|YP_865243.1| serine peptidase [Magnetococcus sp. MC-1] gi|117608382|gb|ABK43837.1| protein C, Serine peptidase, MEROPS family S49 [Magnetococcus sp. MC-1] Length = 436 Score = 95.8 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 91/223 (40%), Gaps = 15/223 (6%) Query: 28 SSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLS 74 SS + +A + I G + + E++ + D + A+++ + Sbjct: 53 SSDLMVTPNGIAVVPIHGTLVKRAGAIEAASGLTSYASVEEKLLDAATDPAVRAILMDID 112 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGG + I + KP+ + ++A + S A + I+ +T+ VGSIGV Sbjct: 113 SPGGEVGGVFDLADMISEAGQGKPIWALADDAFSAAYLIASQA-HRIIVPQTAGVGSIGV 171 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + + K G S +V + K + S + ++ +A +Q VD Y FV V+ Sbjct: 172 IAVHVDESEKDAKEGRSYTTVFAGARKNDFSTHAPLSLEARTNLQLEVDRLYGMFVAAVA 231 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 R + G + G +A +VGL D VG + L Sbjct: 232 AGRKMHESAVRATEAGLFF-GDKAIRVGLADQVGTIRDALAGL 273 >gi|260844235|ref|YP_003222013.1| putative head protein/prohead protease [Escherichia coli O103:H2 str. 12009] gi|260868584|ref|YP_003234986.1| putative head protein/prohead protease [Escherichia coli O111:H- str. 11128] gi|257759382|dbj|BAI30879.1| putative head protein/prohead protease [Escherichia coli O103:H2 str. 12009] gi|257764940|dbj|BAI36435.1| putative head protein/prohead protease [Escherichia coli O111:H- str. 11128] Length = 501 Score = 95.8 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 91/217 (41%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + + K + + F + + Q MQ VD+++ F V+ + + Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRVDAAHRMFAEKVAMYTGLSVE 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 ++ ++ G A K GL D + + + A Sbjct: 256 AV-TGTEAAVFEGQSAIKAGLADELINASDAISVMAA 291 >gi|167624533|ref|YP_001674827.1| putative periplasmic protease [Shewanella halifaxensis HAW-EB4] gi|167354555|gb|ABZ77168.1| Peptidase S49 domain protein [Shewanella halifaxensis HAW-EB4] Length = 342 Score = 95.8 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 56/232 (24%), Positives = 109/232 (46%), Gaps = 9/232 (3%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGE 84 +VE+N P V + +G I+ S+ L E I I D +IV++ S GG + Sbjct: 87 KDNVEENEPKVFVVDFKGSIDASEVASLREEISAILAIADKGDEVIVNVESGGGMVHGYG 146 Query: 85 AIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + ++ + P+ V ++AAS GY+++C +N I +A ++VGSIGV+ Q P Sbjct: 147 LASSQLDRLRQAEIPLSICVDKVAASGGYMMACVANKIYSAPFAIVGSIGVVAQVPNFNR 206 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K + + + K + F E + + Q ++ ++ F +++ R P Sbjct: 207 LLKKHDIDYEQHTAGDFKRTLTIFGENTDEGREKFQKELEETHVLFKEFIAKYR--PDLD 264 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 ++ G W G +A ++GL+D + ++V L ++++ K++ Sbjct: 265 LDKVATGEHWYGQQAIELGLVDEISTSDDVI---MKLANERTVIKVRYQLKK 313 >gi|50084405|ref|YP_045915.1| putative periplasmic protease [Acinetobacter sp. ADP1] gi|49530381|emb|CAG68093.1| putative protease (SohB) [Acinetobacter sp. ADP1] Length = 320 Score = 95.8 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 57/281 (20%), Positives = 116/281 (41%), Gaps = 17/281 (6%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATA 68 L + LT + + N+ + + +G I+ S ++++ + Sbjct: 36 LEFLQLTQQLVKEAKIRKKNNQKIFVLDFKGDIQASA--VDQLREEITLILATAKSGKDR 93 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ L SPGG + + ++++ + V ++AAS GY+++C +N IV+A + Sbjct: 94 VVLRLESPGGMVHGYGLAAAQLVRLRDAGFHLTIVVDKVAASGGYMMACIANEIVSAPFA 153 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 ++GSIGV+ Q P L + V + + K + F E P+ ++ + ++ Sbjct: 154 ILGSIGVVAQVPNFNRLLKEHNVDFELYTAGEYKRTVTMFGENTPEGKAKFEEELKQTHA 213 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F V + R P ++ G W G +A + L+D + +E L +L + Sbjct: 214 LFKHFVEKYR--PQLNVEKVATGEHWYGQDALDLNLVDKLQTSDE---YLLSLLPQHDVY 268 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 I K + L + L + IP + V+ L Sbjct: 269 VI---TTRKKPTLGERLGLQAAQLADSFIPAVMNKVVESLV 306 >gi|325292902|ref|YP_004278766.1| peptidase S49 [Agrobacterium sp. H13-3] gi|325060755|gb|ADY64446.1| peptidase S49 [Agrobacterium sp. H13-3] Length = 372 Score = 95.8 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 59/278 (21%), Positives = 119/278 (42%), Gaps = 17/278 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLS 74 + + +++ VA I + G + D + + + + + + A+++ + Sbjct: 52 AKEIAESTGSVAIIPVYGVLADKMDLFSAMSGGTSYAGIKKALHKALSNADIKAVVLDID 111 Query: 75 SPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 SPGG+ + + I+K++ KP+I +V+ +AASA Y I+ +++ IV + GSIG Sbjct: 112 SPGGTVPGTDELATEIRKLRGGEKPIIAQVNSLAASAAYWIAASTDEIVVTPSGRAGSIG 171 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V + + L++ G+ + + K E + + + +QD V+ SY+ FV V Sbjct: 172 VYTAHDDLSAALEQRGIKRTYISAGKHKVEGNETEPLGKDTLAHVQDGVNRSYNRFVASV 231 Query: 194 SESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 +E R + K GR++ G++D + +E A +R+IK Sbjct: 232 AEGRGVTVSKVEDNFGQGRVFYAEALMDRGMVDRIATLDETLARYGADVEPAPVRRIKAA 291 Query: 253 NPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 N K L + E + ++GL + Sbjct: 292 NAAKAEAAQTLVAKMTAG--EQITKREFENGIRGLMGL 327 >gi|90425823|ref|YP_534193.1| peptidase S49 [Rhodopseudomonas palustris BisB18] gi|90107837|gb|ABD89874.1| peptidase S49 [Rhodopseudomonas palustris BisB18] Length = 302 Score = 95.8 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 61/255 (23%), Positives = 109/255 (42%), Gaps = 17/255 (6%) Query: 38 VARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 V + + G I L + ++R +A A+ ++++SPGGS I+ Sbjct: 33 VPVVRLSGVIGAVTPLRPGLSLAGTAKMLDRAFATRNAKAVALAINSPGGSPVQSRQIYL 92 Query: 89 AIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 I+++ K PVI V ++AAS GY+++CA++ I +S+VGSIGV+ L Sbjct: 93 RIRQLAAEKKLPVIAFVEDVAASGGYMLACAADEIYVDPSSIVGSIGVVGGTFGFPELLK 152 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 K+GV + + KA+ PF +P+ V ++ + + F+ LV +SR Sbjct: 153 KIGVERRLYTAGEHKAQLDPFLPEDPEDVARVKALQREIHAMFISLVKDSRGAKLKGAED 212 Query: 207 -LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L G W G + +GL D +G ++ + V + P Sbjct: 213 LLFSGEYWAGGTSVTLGLSDGIGDLRGTLRARFGDKVRTPV-----IAPASGMLAGLFGR 267 Query: 266 LSISSLLEDTIPLMK 280 S ++ L + + Sbjct: 268 RSAATSLGPFDAVAE 282 >gi|114769102|ref|ZP_01446728.1| peptidase, family S49 [alpha proteobacterium HTCC2255] gi|114550019|gb|EAU52900.1| peptidase, family S49 [alpha proteobacterium HTCC2255] Length = 261 Score = 95.8 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 102/260 (39%), Gaps = 12/260 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIE-----DSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 + V+ + + G I + L +E+ A+ + ++SPGGS Sbjct: 4 KNPFRKKRKSVSIVNLNGMIATGRGLNDAGLAPALEKAFS-KKPDAVALVINSPGGSPVQ 62 Query: 83 GEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 I I+++ N K PV V ++AAS GY ++ +++ I +S+VGSIGV+ Sbjct: 63 SSLIGARIRRLANEKDIPVYAFVEDLAASGGYWLAASADEIYIDPSSVVGSIGVISTGFG 122 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + ++K G+ + + K+ PF + ++ ++ +++ + F +S R Sbjct: 123 LDQLINKHGIERRVHTAGNSKSMLDPFQPQKDEDIKRLKKLLEDVHQNFKDHISSCRGSK 182 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 L G IW G A GL+D +G V D+ K F Sbjct: 183 LAD-RDLFTGEIWVGQRAIDDGLVDGIGH---VIPFFKEKFGDKVSFKTFGQKKSILSRF 238 Query: 261 CDLKNLSISSLLEDTIPLMK 280 I +E+ + Sbjct: 239 GTKIYGDIGHSIEERAAFAR 258 >gi|152978941|ref|YP_001344570.1| putative periplasmic protease [Actinobacillus succinogenes 130Z] gi|150840664|gb|ABR74635.1| Peptidase S49 domain protein [Actinobacillus succinogenes 130Z] Length = 353 Score = 95.4 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 17/252 (6%) Query: 32 EDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 +++ P + + +G I+ S +E+ + A +++ L SPGG + Sbjct: 100 QEHKPTLYVLNFKGDIQASATTALREEITALLSVAK--PEADEVLLRLESPGGLVHGYGL 157 Query: 86 IFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + ++K +T V ++AAS GY+++C ++ IVAA ++VGS+GV+ Q P + Sbjct: 158 AASQLARLKQAGIKLTVAVDKVAASGGYMMACVADKIVAAPFAIVGSVGVVAQVPNIHRL 217 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K V + + + K + E K Q Q ++ ++ F R V+E+R P + Sbjct: 218 LKKHDVDVDVMTAGEFKRTVTILGENTEKGKQKFQQELEETHELFKRFVAENR--PQLEV 275 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 ++ G W G +A +GLID + ++V + + + + Sbjct: 276 EKIATGEHWFGQQALALGLIDKIATSDDVILQAMK------EKSVLELQFKQKKSLIQKL 329 Query: 265 NLSISSLLEDTI 276 E+ Sbjct: 330 GKQAEDSTENLF 341 >gi|85705905|ref|ZP_01037001.1| peptidase, family S49 [Roseovarius sp. 217] gi|85669493|gb|EAQ24358.1| peptidase, family S49 [Roseovarius sp. 217] Length = 244 Score = 95.4 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 53/237 (22%), Positives = 101/237 (42%), Gaps = 12/237 (5%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEM 106 + + IE+ A+ + ++SPGGS I I+++ K PV V ++ Sbjct: 11 SDETIGPVIEKAFSRGKPVAVALVINSPGGSPVQSSLIAARIRRLAEEKSIPVHAFVEDV 70 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 AAS GY ++ A++ I +S++GSIGV+ FL + GV + + K+ P Sbjct: 71 AASGGYWLAVAADDIWVDASSVLGSIGVISAGFGANEFLTRQGVERRIYTAGKSKSTLDP 130 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 F P+ V ++ +++ + F+ V R L G W GA + ++GL D Sbjct: 131 FMPEKPEDVTRLKGILEDIHGAFITHVKSRRGSKLADDPDLFTGEFWLGARSIELGLADG 190 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 +G ++LY + + + + +SL +D + +++ Sbjct: 191 IGHLVPKMKALYG-----DKVRFSKYGRKRGLFQRF-----GASLTQDALSFVEERA 237 >gi|152981575|ref|YP_001354459.1| hypothetical protein mma_2769 [Janthinobacterium sp. Marseille] gi|151281652|gb|ABR90062.1| phage-related protein [Janthinobacterium sp. Marseille] Length = 435 Score = 95.4 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 14/224 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVS 72 +A I + G + E+ R++ D +++ Sbjct: 46 MPRQSSTSGQAGIAVIPVVGTLVRRSMGIEAASGLMSYGEIEARLDAALADPQVAGILLD 105 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 L SPGG A + I+ KP+ ++ A SA + I+ A + ++T+ VGSI Sbjct: 106 LDSPGGEASGVFELAERIRAASTIKPIWAHANDAAYSAAFAIAAACQRLTLSQTAGVGSI 165 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 GV+ + K G++ +V + K + SP ++P+A+ +Q VD Y FV Sbjct: 166 GVIALHVDQSVKDAKDGLNYTAVFAGSHKNDFSPHEPLSPQAITALQTEVDRLYDIFVNQ 225 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 V + R + D G + G +A GL D V + V Sbjct: 226 VGQMRGLDPDAVRATEAGLFY-GEQAVAAGLADAVMPFDAVMTE 268 >gi|117925862|ref|YP_866479.1| serine peptidase [Magnetococcus sp. MC-1] gi|117609618|gb|ABK45073.1| protein C, Serine peptidase, MEROPS family S49 [Magnetococcus sp. MC-1] Length = 418 Score = 95.4 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 15/224 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSL 73 +SS + +A + I G + + E++ + D + A+++ + Sbjct: 34 YSSDLMVTPNGIAIVPIHGTLVKRVGAVEAASGLMSYASIEEKLLDAATDPAVRAILMDI 93 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 SPGG + I + KP+ + ++A + S A + I+ +T+ VGSIG Sbjct: 94 DSPGGEVGGVFDLADMISEAGQGKPIWALADDAFSAAYLIASQA-HRIIVPQTAGVGSIG 152 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V+ + K G S +V + K + S + ++ +A +Q VD Y FV V Sbjct: 153 VIAVHVDESEKDAKEGRSYTTVFAGARKNDFSTHAPLSLEARTNLQLEVDRLYGMFVAAV 212 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 + R + G + G +A +VGL D VG + L Sbjct: 213 AAGRKMHESAVRATEAGLFF-GDKAIRVGLADQVGTIRDALAGL 255 >gi|117924561|ref|YP_865178.1| serine peptidase [Magnetococcus sp. MC-1] gi|117608317|gb|ABK43772.1| protein C, Serine peptidase, MEROPS family S49 [Magnetococcus sp. MC-1] Length = 418 Score = 95.4 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 15/223 (6%) Query: 28 SSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLS 74 SS + +A + I G + + E+I + D + A+++ + Sbjct: 35 SSDLLITPNGIAVVPIHGTLVKRAGAIEAASGLTSYASIEEKILDAATDPAVRAILMDVD 94 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGG + IQ+ KP+ + ++A + S A + I+ +T+ VGSIGV Sbjct: 95 SPGGEVGGVFDLAAMIQEAGQDKPIWALADDAFSAAYLIASQA-HRIIVPQTAGVGSIGV 153 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + + K G S +V + K + S + ++ +A +Q VD Y FV V+ Sbjct: 154 IAAHVDESEKDAKEGRSYTTVFAGARKNDFSTHAPLSLEARTNLQLEVDRLYGMFVAAVA 213 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 R + G + G +A +VGL D VG + L Sbjct: 214 AGRKMNESAVRATEAGLFF-GDKAIRVGLADQVGTIRDALAGL 255 >gi|262372062|ref|ZP_06065341.1| signal peptide peptidase SppA, 36K type [Acinetobacter junii SH205] gi|262312087|gb|EEY93172.1| signal peptide peptidase SppA, 36K type [Acinetobacter junii SH205] Length = 320 Score = 95.4 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 58/262 (22%), Positives = 107/262 (40%), Gaps = 13/262 (4%) Query: 32 EDNSPHVARIAIRGQIEDS--QELIERIERISRDDSA--TALIVSLSSPGGSAYAGEAIF 87 + N + + +G ++ S + E I I A ++V L SPGG + Sbjct: 53 KKNDQKIYVLDFKGDVQASAVDTIREEITLILATAKAGHDRVVVRLESPGGMVHGYGLAA 112 Query: 88 RAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 + ++++ +T ++AAS GY+++C +N I+ A ++VGSIGV+ Q P L Sbjct: 113 AQLVRLRDAGFNVTICVDKVAASGGYMMACIANEIITAPFAVVGSIGVVAQVPNFNRLLK 172 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 + V + + K + F E P+ ++ + ++ F V + R P Sbjct: 173 QHNVDFELYTAGEYKRTVTMFGENTPEGKAKFEEELQQTHSLFKHFVEKYR--PQLDISK 230 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 ++ G W G +A + L+D + +E SL + N K F + L Sbjct: 231 VATGEHWYGEDALALNLVDKLQTSDEYLLSLLPKH------DVYVINTRKRPTFGEKLGL 284 Query: 267 SISSLLEDTIPLMKQTKVQGLW 288 + + E IP + L Sbjct: 285 QAAQMAESLIPAVLGKMTDTLV 306 >gi|220922431|ref|YP_002497733.1| peptidase S49 [Methylobacterium nodulans ORS 2060] gi|219947038|gb|ACL57430.1| peptidase S49 [Methylobacterium nodulans ORS 2060] Length = 461 Score = 95.4 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 97/217 (44%), Gaps = 13/217 (5%) Query: 34 NSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSPGGSA 80 + VA I + G++ + + ++ + D ++++ L SPGG A Sbjct: 97 TADGVAIITMVGELVNRGAWVGASSGLISYEGFAYQMRMAAADLRTKSILLDLESPGGEA 156 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +++V +KPV V+ MAASA Y I+ A+N IV T + GSIGV+ + Sbjct: 157 VGAFEAAEVVRQVAAQKPVTALVNGMAASAAYAIASAANRIVTIPTGISGSIGVVLCHLD 216 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 +L G+ + + K + +P+ + +Q V+ Y FV V++ R Sbjct: 217 FSEWLKAEGLKPTLIFAGDHKVDANPYEPLPDDVRANLQAEVEGFYGKFVETVAKGRTNL 276 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 + + + R + G EA GL+D VG EEV L Sbjct: 277 DETKIRGTQARCFMGEEAVAAGLVDAVGTLEEVLADL 313 >gi|325914610|ref|ZP_08176951.1| ClpP class periplasmic serine protease [Xanthomonas vesicatoria ATCC 35937] gi|325539112|gb|EGD10767.1| ClpP class periplasmic serine protease [Xanthomonas vesicatoria ATCC 35937] Length = 331 Score = 95.4 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 66/266 (24%), Positives = 115/266 (43%), Gaps = 15/266 (5%) Query: 27 WSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 W + + VA I I G I + +I IE+ R + T +++ + SPGGS Sbjct: 74 WGLNADPVRDSVALITINGGIGEMGKASATSVIPLIEQACRAERVTEVVLLIDSPGGSPT 133 Query: 82 AGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + I A++ K K I+ + M ASA Y+I+ ++ I A+ SLVGSIG + +Y Sbjct: 134 DADRIVSALKICKAAKRPVISVIGSMGASAAYMIAMHTDRIYASRYSLVGSIGAITRYVD 193 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 +LG+ + KS +K PS S +P+ ++M ++V F + +R Sbjct: 194 ASGLAQRLGLVEQVYKSGQLKGGPSTLSGSSPEDSKLMAELVVQVASEFYGQLQAARGPR 253 Query: 201 YD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 L GRIWT +A +GL+D + E++ + + + Sbjct: 254 LKGSREDLMSGRIWTAQDAVALGLVDEIAVLEDL--------KLTRFKDKRIYQYRAKSS 305 Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQ 285 F L+ ++ + KQ ++ Sbjct: 306 FMTDMGLTAEAVSRSFVAGAKQGVIE 331 >gi|219681309|ref|YP_002456073.1| putative prohead protease [Erwinia phage phiEa21-4] gi|199580576|gb|ACH88963.1| putative prohead protease [Erwinia phage phiEa21-4] Length = 456 Score = 95.1 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 2/242 (0%) Query: 45 GQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH 104 G + Q L + D S +++ + S GG A + R I++ N KPVI V Sbjct: 87 GGLSSYQGLTRAFDEAVADASVDKIVLMIDSGGGEAAGCFELARHIKEHSNGKPVIAYVD 146 Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 E A SA Y ++CA++ I A+ + VGSIGV+ + ++K GV +K+ +K Sbjct: 147 ERACSAAYALACAASEIYASPNADVGSIGVIVIHQEFSKAMEKAGVQTNIIKAGEVKGMG 206 Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLI 224 +PF ++ +A ++Q VD+SY FV LVS SR I + R++ EA + LI Sbjct: 207 NPFEPLSDQAKDLIQKSVDNSYTSFVNLVSSSRGISAEAVKDT-GARVYGAQEALSLKLI 265 Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 D + +E L+ G S+ + + ++ I ++ Sbjct: 266 DGIKTTDEFKDYLFG-GNGASLNVPNQPAIQQANSEELEMDAEKEKAYQEQIAALQAQIN 324 Query: 285 QG 286 QG Sbjct: 325 QG 326 >gi|86139851|ref|ZP_01058417.1| Peptidase U7 [Roseobacter sp. MED193] gi|85823480|gb|EAQ43689.1| Peptidase U7 [Roseobacter sp. MED193] Length = 472 Score = 95.1 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 49/209 (23%), Positives = 89/209 (42%), Gaps = 14/209 (6%) Query: 36 PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A I I G + + + +IE +RD S A+ + + S GG Sbjct: 80 DGIAVIEISGVLIHRGGWIGQSSGQTSYEGIAAQIEAAARDASVRAVALEIDSFGGEVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + ++ ++ KPV + E A SAGY ++ ++ I+ T VGSIGV+ + + Sbjct: 140 VFDLADQVRALRRDKPVWAFIAEHAFSAGYALASQADRILLPRTGTVGSIGVVVMHADLS 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LD+ GV + + S K + +P+ + +Q +D F V+ R+ Sbjct: 200 GQLDQDGVRVTMIHSGQHKVDGNPYEPLPESVRDDIQREIDVLRFLFAETVAAGRSGLLS 259 Query: 203 KTLVL-SDGRIWTGAEAKKVGLIDVVGGQ 230 + L ++ + G++A GL D V Sbjct: 260 QDAALATEATTYRGSDAVAAGLADEVVDL 288 >gi|225166403|ref|ZP_03728068.1| 4-phytase [Opitutaceae bacterium TAV2] gi|224799357|gb|EEG17919.1| 4-phytase [Opitutaceae bacterium TAV2] Length = 512 Score = 95.1 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 9/196 (4%) Query: 29 SHVEDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGS 79 +N +A + G+I D I + DD A+++ ++SPGGS Sbjct: 315 KRKSNNGARLAIVYAEGEIVDGEGEIGVVGGDAFSREIRALRLDDDIAAIVLRVNSPGGS 374 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A A E I R +Q KPV+ + AAS GY I+ + I A T++ GSIGV Sbjct: 375 ASASEHILRELQLAAEVKPVVVSMGNYAASGGYWIALSGGRIFAEPTTITGSIGVFGLQF 434 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 V+ + GV+ VK+ + P + + Q +VD +Y F++ VS +R++ Sbjct: 435 DVQKLANTHGVTWDGVKTGRYAGAFTLTRPKTPAEMAIFQRLVDWTYAEFIKRVSTARSL 494 Query: 200 PYDKTLVLSDGRIWTG 215 + ++ GR+W+G Sbjct: 495 EPARVQEIAQGRVWSG 510 >gi|218677398|ref|ZP_03525295.1| signal peptide peptidase SppA, 36K type [Rhizobium etli CIAT 894] Length = 194 Score = 95.1 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 83/164 (50%), Positives = 125/164 (76%) Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGG+ Y GE IF+AI+ + +KPV+++V +AASAGY+I+ A + I+A ++S+ GSIGV Sbjct: 1 SPGGTTYGGEKIFKAIRAISAKKPVVSDVRTLAASAGYMIATAGDTIIAGDSSITGSIGV 60 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 +FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A M++++V SY+WFV LV+ Sbjct: 61 IFQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKAMIRNMVVDSYNWFVDLVA 120 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 + R +P D+ L L+DG I+TG +A KV L+D +GG+ E+ L Sbjct: 121 DRRKLPRDEVLKLADGTIYTGRQALKVKLVDTIGGEPEIRAYLK 164 >gi|149377455|ref|ZP_01895198.1| Periplasmic serine protease (ClpP class) [Marinobacter algicola DG893] gi|149358296|gb|EDM46775.1| Periplasmic serine protease (ClpP class) [Marinobacter algicola DG893] Length = 354 Score = 95.1 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 103/252 (40%), Gaps = 13/252 (5%) Query: 27 WSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISR--DDSATALIVSLSSPGGSAYA 82 E P V + G I D+ L I + + +++ L S GG ++ Sbjct: 95 SGDAEEKPRPKVYVLDFDGDIKASDTDSLRRSITAVLSVAEPETDEVVIRLESGGGLVHS 154 Query: 83 GEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + +++ + +T ++AAS GY+++C ++ IVA+ +++GSIGV+ Q P Sbjct: 155 YGLAAAQLDRIRAKGIRLTACVDKVAASGGYMMACVADRIVASPFAILGSIGVVAQLPNF 214 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 FL K V + + + K + F E K + ++ ++ F V E R P Sbjct: 215 HRFLKKNDVDFEILTAGEHKRTMTVFGENTDKGRTKFLEDLEDTHVLFKEYVGERR--PE 272 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 +++G IW G A +V L+D + +E + + Sbjct: 273 LDIAAVANGDIWFGRRALEVKLVDEIKTSDEFLIEACDRA------DVISVGFQRKRTLP 326 Query: 262 DLKNLSISSLLE 273 + L+ S+ LE Sbjct: 327 EKLGLATSAALE 338 >gi|301156336|emb|CBW15807.1| predicted inner membrane peptidase [Haemophilus parainfluenzae T3T1] Length = 351 Score = 95.1 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 107/230 (46%), Gaps = 13/230 (5%) Query: 35 SPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 P V + +G I S+ E+ I DD +++ L SPGG + Sbjct: 101 KPCVYVLDFKGDISASETTALREEISAIINVAKADDE---VLLRLESPGGVVHGYGLAAS 157 Query: 89 AIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + ++K + +T V ++AAS GY+++C ++ IV+A +++GSIGV+ Q P + L K Sbjct: 158 QLARLKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAIIGSIGVVAQIPNIHRLLKK 217 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 V + + + K + E K Q Q ++ ++ F + V+++R P+ + Sbjct: 218 HDVDVDVMTAGEFKRTVTVLGENTEKGKQKFQAELEETHQLFKQFVAQNR--PHLDVDKV 275 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256 + G W G +A ++ L+D + +++ + + V K+K K Sbjct: 276 ATGEHWFGQQALELQLVDELATSDDIILEKMKDKSVIAVKYKVKKPLLQK 325 >gi|254514364|ref|ZP_05126425.1| peptidase S49 [gamma proteobacterium NOR5-3] gi|219676607|gb|EED32972.1| peptidase S49 [gamma proteobacterium NOR5-3] Length = 355 Score = 95.1 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 56/266 (21%), Positives = 114/266 (42%), Gaps = 16/266 (6%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGS 79 S P + + G I S +E++ + +++ L S GG Sbjct: 95 IKAGSEASAEKPRLYVLDFDGDIRASA--VEQLREEVSTLLGELRDTDEVLLRLESGGGM 152 Query: 80 AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 ++ +Q+++ + +T V ++AAS GY+++C +N I+AA +++GSIGV+ Q Sbjct: 153 VHSYGLASSQLQRIRAKGVKLTVAVDKVAASGGYMMACVANEIIAAPFAIIGSIGVVAQL 212 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P L K + ++ + + K + F E K + ++ ++ ++ F + V E+R Sbjct: 213 PNFHRVLKKNDIDVEILTAGEYKRTLTVFGENTDKGREKFKEELEDTHVLFKQFVKENRE 272 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + ++ G W G AK V L+D + +E Q + + P+ Sbjct: 273 --VVEIDSVATGETWYGQRAKDVNLVDAIQTSDEYIQDKLESHGVFELTYV-----PRKN 325 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKV 284 W L ++ + LE + + Q + Sbjct: 326 WQQKL-GIAAENALERSFLKLWQASL 350 >gi|157961477|ref|YP_001501511.1| putative periplasmic protease [Shewanella pealeana ATCC 700345] gi|157846477|gb|ABV86976.1| Peptidase S49 domain protein [Shewanella pealeana ATCC 700345] Length = 342 Score = 95.1 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 56/253 (22%), Positives = 104/253 (41%), Gaps = 12/253 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGE 84 VE+ P V + +G I+ + L E I I D +IV++ S GG + Sbjct: 87 KDQVEEAEPKVFVVDFKGSIDAGEVASLREEISAILAIADKGDEVIVNVESGGGMVHGYG 146 Query: 85 AIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + ++ + P+ V ++AAS GY+++C +N I +A ++VGSIGV+ Q P Sbjct: 147 LASSQLDRLRQAEIPLTICVDKVAASGGYMMACVANKIYSAPFAIVGSIGVVAQVPNFNR 206 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K + + + K + F E + + Q ++ ++ F +++ R P Sbjct: 207 LLKKHDIDYEQHTAGDFKRTLTIFGENTDEGREKFQKELEETHVLFKAFIAKYR--PDLD 264 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A ++GL+D + ++V L + R + D Sbjct: 265 LDKVATGEHWYGQQAIELGLVDEIATSDDVIMKLA------NERTVIKVQYQLKKTLSDK 318 Query: 264 KNLSISSLLEDTI 276 S Sbjct: 319 IAHGASLSFNSIF 331 >gi|291621953|emb|CAX64986.1| gp05 protein [Vibrio phage VP58.5] Length = 423 Score = 95.1 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 1/192 (0%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 I + + + D +++ S GG A + R I + +KPVI V+E Sbjct: 87 PITSYELIRHDYDTALNDPEVKLIVMEFDSGGGEAAGCFDLARHILSTRGKKPVIAFVNE 146 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 SA Y ++C + + ++ GSIGV+ + K+G+SI+ S KA+ S Sbjct: 147 SCYSAAYALACCCDQVYLTSSAGAGSIGVICGRLDQTEYNRKMGLSIELFVSGDYKADFS 206 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P ++ Q +Q ++ F LV+E+R + ++ L G +TG A GL D Sbjct: 207 PHKVLSDDERQRLQALIVQLGSEFHNLVAEARGMTAEQVKALKAGC-FTGRVAVDNGLAD 265 Query: 226 VVGGQEEVWQSL 237 V Q+E + L Sbjct: 266 GVMSQDEFYNYL 277 >gi|83945138|ref|ZP_00957487.1| putative proteinase IV [Oceanicaulis alexandrii HTCC2633] gi|83851308|gb|EAP89164.1| putative proteinase IV [Oceanicaulis alexandrii HTCC2633] Length = 554 Score = 95.1 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 92/236 (38%), Gaps = 27/236 (11%) Query: 36 PHVARIAIRGQIE--------------DSQELIERIERISRDDSATALIVSLSSPGGSAY 81 +VA I I G + ++ + + + D+ A+++ +PGG Sbjct: 92 DNVALIEIEGVLMSRGFEGVWSGCYWPGYRDYVAAVRAANEDERVDAILLRFDTPGGYVA 151 Query: 82 AGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 +A++ + KP++ E+ ASAG ++ + + A++ ++VGS+GV + Sbjct: 152 GCAEAAQALRNLNQSNGGKPLVGHADELCASAGMKLAAQCDGLFASDGAMVGSVGVRIGF 211 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L+K G KS +K SP + + Q VD F ++ R Sbjct: 212 FDFEGALEKWGERYHVYKSGRLKDMGSPLRAPTDEESAIYQAEVDHLADRFYVELALGRG 271 Query: 199 IPYDKTLVL--SDGRIWTGAE----AK----KVGLIDVVGGQEEVWQSLYALGVDQ 244 + + + R +T + A+ V LID V +E + +L Sbjct: 272 LDLEAVRESRGWEARTFTAGDPPPPAELDPLAVDLIDAVMTEEAAFAVAQSLAGTP 327 >gi|226952528|ref|ZP_03822992.1| protease SohB [Acinetobacter sp. ATCC 27244] gi|294649823|ref|ZP_06727225.1| protease SohB [Acinetobacter haemolyticus ATCC 19194] gi|226836710|gb|EEH69093.1| protease SohB [Acinetobacter sp. ATCC 27244] gi|292824306|gb|EFF83107.1| protease SohB [Acinetobacter haemolyticus ATCC 19194] Length = 320 Score = 94.7 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 110/261 (42%), Gaps = 13/261 (4%) Query: 32 EDNSPHVARIAIRGQIEDS--QELIERIERISRDDSA--TALIVSLSSPGGSAYAGEAIF 87 + N + + +G ++ S + E I I A ++V L SPGG + Sbjct: 53 KKNDKKIYVLDFKGDMQASAVDTIREEITLILATAKAGHDRVVVRLESPGGMVHGYGLAA 112 Query: 88 RAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 + ++++ +T ++AAS GY+++C ++ I++A ++VGSIGV+ Q P L Sbjct: 113 AQLVRLRDAGFHVTICVDKVAASGGYMMACIASEIISAPFAVVGSIGVVAQVPNFNRLLK 172 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 + V + K + F E P+ ++ + ++ F + + R P Sbjct: 173 QHHVDFDLYTAGQYKRTVTMFGENTPEGKAKFEEELQQTHVLFKHFIEKYR--PQLDVEK 230 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 ++ G W G +A+++ L+D + +E L S + N K F + L Sbjct: 231 VATGEHWYGEDARQLNLVDKLQTSDEY------LLGLLSQHDVYVINTRKRPTFGEKLGL 284 Query: 267 SISSLLEDTIPLMKQTKVQGL 287 + + E+ IP + L Sbjct: 285 QAAQMAENLIPTVMGKLADSL 305 >gi|15789821|ref|NP_279645.1| proteinase IV-like protein [Halobacterium sp. NRC-1] gi|169235542|ref|YP_001688742.1| proteinase IV [Halobacterium salinarum R1] gi|10580211|gb|AAG19125.1| proteinase IV homolog [Halobacterium sp. NRC-1] gi|167726608|emb|CAP13393.1| proteinase IV [Halobacterium salinarum R1] Length = 300 Score = 94.7 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 87/226 (38%), Gaps = 18/226 (7%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDS 65 V+ ++V S VA + I I + + + I +DS Sbjct: 16 WTFIIVVAAIVGGVGGVALQSGSDSGPENSVAVVNIESAITGGTGDAVAKELRSIRGNDS 75 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 A+++ +SSPGG+ E +RA++++ KPV+T V AAS GY ++ I Sbjct: 76 IDAVVLRVSSPGGAVSGSEVQYRAVKRLAQEKPVVTSVRGPAASGGYYTIAPTDKIYVTP 135 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 +SLVGS+GV+ + + + P + + Sbjct: 136 SSLVGSVGVISSVSENNGVPSRWKSAPDKGTTGPA---------------DKARARAATF 180 Query: 186 YHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQ 230 F+ +V R + +I+ G +A ++GL D +GG Sbjct: 181 RQSFLDVVMNERGDDLTVDRETIGRAQIYAGNKAVEIGLADEIGGL 226 >gi|88703297|ref|ZP_01101013.1| protease SohB [Congregibacter litoralis KT71] gi|88702011|gb|EAQ99114.1| protease SohB [Congregibacter litoralis KT71] Length = 355 Score = 94.7 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 58/267 (21%), Positives = 116/267 (43%), Gaps = 18/267 (6%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGG 78 + P + + G I S +E+ + + +D +++ L S GG Sbjct: 95 LKSGNEETPEQPRLYVLDFNGDIRASAVEELREEVSTLLGELRENDE---VLLRLESGGG 151 Query: 79 SAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 ++ +Q+++N+ +T V ++AAS GY+++C +N I+AA +++GSIGV+ Q Sbjct: 152 MVHSYGLASSQLQRIRNKGAKLTVAVDKVAASGGYMMACVANQIIAAPFAIIGSIGVIAQ 211 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P L K + + + + K + F E K ++ ++ ++ F + V E+R Sbjct: 212 LPNFHRVLKKNDIDFEVLTAGEYKRTLTIFGENTDKGRDKFKEELEDTHVLFKQFVKENR 271 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 ++ G W G AK V L+D + +E Q A + ++ P KN Sbjct: 272 E--VVDIDSVATGETWYGQRAKAVNLVDELQTSDEYIQDKLATHGVYEL----NYVPRKN 325 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKV 284 + ++ + LE + + Q + Sbjct: 326 --WQQKLGIAAENALERSFLKLWQASL 350 >gi|86742603|ref|YP_483003.1| signal peptide peptidase A [Frankia sp. CcI3] gi|86569465|gb|ABD13274.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49 [Frankia sp. CcI3] Length = 682 Score = 94.7 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 2/202 (0%) Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSL 128 + +SSPGGS A + + R ++ + I + ++AAS GY ++ AS+ IVA +L Sbjct: 410 VFRVSSPGGSYVASDLVRREAERFRASGRPLIVSMGDVAASGGYFVALASDAIVANPGTL 469 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 GSIGV + LDK+GV +V SP P + +++ +D Y Sbjct: 470 TGSIGVFAGKQVISGLLDKVGVGFGAVAEGEHALMMSPRRPFTPGEREKLEEFLDRVYAD 529 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ-SIR 247 FV V+ +R + D+ L+ GR+WTGA+A GL+DV+GG + + ++ Sbjct: 530 FVDKVAVARGLSRDQAHQLARGRVWTGADAHAHGLVDVLGGLAQAIELAWSRAGLPAGET 589 Query: 248 KIKDWNPPKNYWFCDLKNLSIS 269 P + S Sbjct: 590 PRVRLTPKPSVLERVRSPKSSE 611 Score = 73.1 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 84/197 (42%), Gaps = 7/197 (3%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 ++++E + + D + ++ +++ G + I AI + + Sbjct: 54 RDVVEGLRYATEDPRVSIVVAHIAACGMPLARIQEIRAAIAAFRAAGGTAIAYADTFGEF 113 Query: 111 -----GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 Y ++CA + I A G G+ + P+++ LD+LG+S++ + K + Sbjct: 114 GGGTAPYYLACAFDEIWLAPPGDCGLTGLGMEAPFLRGALDRLGISVEIGQRYEYKNAVN 173 Query: 166 P--FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 + P ++ + +++SS V ++E R + D+ L D G+ A GL Sbjct: 174 TLVERDFTPAHLEAVSRIIESSSDQIVAGIAEGRGLSTDRVRRLIDLGPLAGSVALDTGL 233 Query: 224 IDVVGGQEEVWQSLYAL 240 +D +G ++EV+ + Sbjct: 234 VDRLGYRDEVYAAARER 250 >gi|327198436|ref|YP_004327024.1| head maturation protease [Erwinia phage phiEa104] gi|311875132|emb|CBX44392.1| head maturation protease [Erwinia phage phiEa104] Length = 456 Score = 94.7 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 2/242 (0%) Query: 45 GQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH 104 G + Q L + D S +++ + S GG A + R I++ N KPVI V Sbjct: 87 GGLSSYQGLTRAFDEAVADASVDKIVLMIDSGGGEAAGCFELARHIKEHSNGKPVIAYVD 146 Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 E A SA Y ++CA++ I A+ + VGSIGV+ + ++K G+ +K+ +K Sbjct: 147 ERACSAAYALACAASEIYASPNADVGSIGVIVIHQEFSKAMEKAGIQTNIIKAGEVKGMG 206 Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLI 224 +PF ++ +A ++Q VD+SY FV LVS SR I + R++ EA + LI Sbjct: 207 NPFEPLSDQAKDLIQKSVDNSYTSFVNLVSSSRGISAEAVKDT-GARVYGAQEALSLKLI 265 Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 D + +E L+ G S+ + + ++ I ++ Sbjct: 266 DGIKTTDEFKDYLFG-GNGASLNVPNQPAIQQANSEELEMDAEKEKAYQEQIAALQAQIN 324 Query: 285 QG 286 QG Sbjct: 325 QG 326 >gi|300024371|ref|YP_003756982.1| peptidase S49 [Hyphomicrobium denitrificans ATCC 51888] gi|299526192|gb|ADJ24661.1| peptidase S49 [Hyphomicrobium denitrificans ATCC 51888] Length = 277 Score = 94.7 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 61/271 (22%), Positives = 111/271 (40%), Gaps = 22/271 (8%) Query: 36 PHVARIAIRGQIEDSQELIE---------RIERISRDDSATALIVSLSSPGGSAYAGEAI 86 P V + G I + L IE+ A+ V ++SPGGS + Sbjct: 8 PFVPVLRFHGPIGMATPLRPGLTLGAYSNAIEKAFLVSKLPAVAVIVNSPGGSPVQSNLL 67 Query: 87 FRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 F+ I+++ + +K V ++AAS GY ++ A + I A +S++GSIGV+ + Sbjct: 68 FKRIRQLAVEKKKRVYVFCEDVAASGGYFLAIAGDEIYADPSSIIGSIGVVSRSFGFVDL 127 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L+K+GV + + K + PF + V ++ + + F+ LV E R Sbjct: 128 LEKIGVERRVYTAGINKNQLDPFLPEDADDVARLKAIQRDVHDIFIGLVKERRLGKLKAP 187 Query: 205 L-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L G W+ A A + GL+D + Q ++ ++K P K L Sbjct: 188 DTELFSGAFWSAARAVEFGLVDGITDIRSKMQDIFG-----EKIRLKVIEPEKPGLLARL 242 Query: 264 KNLSISSLLED-----TIPLMKQTKVQGLWA 289 + + ++ L+ + + LW+ Sbjct: 243 RRTPGAIGIQTPALAFADDLVSAVETRTLWS 273 >gi|213019703|ref|ZP_03335508.1| putative minor capsid protein c [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|213019745|ref|ZP_03335549.1| putative minor capsid protein c [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994651|gb|EEB55295.1| putative minor capsid protein c [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994744|gb|EEB55387.1| putative minor capsid protein c [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 341 Score = 94.7 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 104/241 (43%), Gaps = 14/241 (5%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQELIE 55 + + +LSL F H N +A I I G + + + E Sbjct: 4 RRSFELLSLYNSKQPIFKNLKHFHINPKGIAIIRIYGVLTKKTEAFDHILDMTSYENIHE 63 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 IE D S +++ + SPGG + I V+ +K +I ++ A SA Y I+ Sbjct: 64 EIESALEDKSIETILLDIDSPGGEVNGVFDLADFIYGVRGKKRIIAIANDDAYSAAYAIA 123 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 ++ + TS VGSIGV+ + F +K G+ ++ + K + +P + +++ Sbjct: 124 SSAEKVFVCRTSGVGSIGVIASHIDQSGFDEKQGIKYTTIFAGKRKNDLNPHEPMTSESL 183 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 + +Q VD Y FV+L++ +R + +K G + G +A ++GL D V E Sbjct: 184 ESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFIN 242 Query: 236 S 236 Sbjct: 243 K 243 >gi|134297328|ref|YP_001121063.1| peptidase S49 [Burkholderia vietnamiensis G4] gi|134140485|gb|ABO56228.1| protein C, Serine peptidase, MEROPS family S49 [Burkholderia vietnamiensis G4] Length = 412 Score = 94.7 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 85/221 (38%), Gaps = 14/221 (6%) Query: 29 SHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSS 75 +A I I G + E+ ++ D + +++ + S Sbjct: 50 PSAATAPKGIAVIPIHGSLVKRSLGMEAASGLTSYGEIAAMLDSALADPQVSGILLDIDS 109 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 PGG A + R +++V KPV ++ A SA Y I+ ++ + ET VGSIGV+ Sbjct: 110 PGGEASGSFELARRVREVAAMKPVWAVANDAAYSAAYAIAASAQRLFVTETGGVGSIGVI 169 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 + K G ++ + K + SP ++ A +Q VD Y F V+ Sbjct: 170 ALHVDQSVKDAKDGYRFTAITAGAHKNDYSPHEPLSDAAKTELQGEVDRLYSIFTEHVAA 229 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 R++ D G + G+ A GL D + E Sbjct: 230 MRDLDVDAVRATEAGLFF-GSNAVAQGLADGLQTLEVTLSE 269 >gi|296436953|gb|ADH19123.1| exported protease IV [Chlamydia trachomatis G/11222] Length = 331 Score = 94.3 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 60/274 (21%), Positives = 111/274 (40%), Gaps = 14/274 (5%) Query: 30 HVEDNSPHVARIAIRGQIEDS-------QELIERIERISRDDSATALIVSLSSPGGSAYA 82 + +P +A I I I S Q ++ + ++V + PGG + Sbjct: 57 ELGKTAPIIAVIDINDAIMASGGAAKRLQSALQPLNEAPYKGRVKGILVKIDCPGGEVFE 116 Query: 83 GEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYP 139 + + + K + PV V + AS GY ++C ++ I +SL+GSIGV Y Sbjct: 117 IDRMCATLSFWKKQWGIPVHVFVSGLCASGGYYVACIADKIGTTSSSLIGSIGVRSGPYF 176 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-N 198 VK L + GV + + KA +PFS + Q +VD+ Y FV V + R Sbjct: 177 SVKEGLQRHGVETAILTAGDDKAPLNPFSSWTEEEYAERQGIVDAFYEQFVDHVVKYRSK 236 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 + +K + R++ +A + GL+D + QE+ + L + ++ + Sbjct: 237 LSKEKLTKVLGARVFIAKQALEEGLVDAINQTQEQALEELAEACGIKDNYRVIGLG--SS 294 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 ++ + +S L + Q ++W Sbjct: 295 HFLKRFSSYLSNSPLVTGKLQVTALPDQQQKSLW 328 >gi|117925336|ref|YP_865953.1| serine peptidase [Magnetococcus sp. MC-1] gi|117609092|gb|ABK44547.1| protein C, Serine peptidase, MEROPS family S49 [Magnetococcus sp. MC-1] Length = 433 Score = 94.3 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 91/223 (40%), Gaps = 15/223 (6%) Query: 28 SSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLS 74 SS + +A + I G + + E++ + D + A+++ + Sbjct: 51 SSDLMVTPNGIAIVPIHGTLVKRVGAVEAASGLMSYASIEEKLLDAATDPAVRAILMDID 110 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 SPGG + I + KP+ + ++A + S A + I+ +T+ VGSIGV Sbjct: 111 SPGGEVGGVFDLAAMIHEAGQGKPIWALADDAFSAAYLIASQA-HRIIVPQTAGVGSIGV 169 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + + K G S +V + K + S + ++ +A +Q VD Y FV V+ Sbjct: 170 IAAHVDESEKDAKEGRSYTTVFAGARKNDFSTHAPLSLEARTNLQLEVDRLYGMFVAAVA 229 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 R + G + G +A +VGL D VG + L Sbjct: 230 AGRKMHESAVRATEAGLFF-GDKAIRVGLADQVGTIRDALAGL 271 >gi|309793297|ref|ZP_07687724.1| putative signal peptide peptidase SppA [Escherichia coli MS 145-7] gi|308122884|gb|EFO60146.1| putative signal peptide peptidase SppA [Escherichia coli MS 145-7] Length = 501 Score = 94.3 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 89/216 (41%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVSGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + + K + + F + + Q MQ +D+++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRIDAAHRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|209884719|ref|YP_002288576.1| peptidase S49 [Oligotropha carboxidovorans OM5] gi|209872915|gb|ACI92711.1| peptidase S49 [Oligotropha carboxidovorans OM5] Length = 432 Score = 94.3 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 57/270 (21%), Positives = 98/270 (36%), Gaps = 14/270 (5%) Query: 29 SHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSS 75 V I I G + + + +++ D + ++I+ + S Sbjct: 68 KPYSVTKEGVGIITITGSLVNRGAWIGAKSGLTSYEGIQHQLKSARDDAAVKSIILDIHS 127 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 PGG A +++V ++K V+ V+ MAASA Y I + IV ET + GSIGV+ Sbjct: 128 PGGEAVGAFETAAIVREVASKKKVVAVVNGMAASAAYAIPSGATEIVTTETGVSGSIGVV 187 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 + LD G++ + + K + + + +Q VD+ Y F+ V++ Sbjct: 188 LLHADFSRKLDHDGITPTLIHAGAHKVDGNSLEPLTDAVKSDLQAEVDAFYETFLATVAK 247 Query: 196 SRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 R R + G A GL D VG E V L G + + K Sbjct: 248 GRGGRLSVAAARKTEARTFIGKAAVDAGLADRVGSFESVLAELSRAGARNLVHERKTSMD 307 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 D + + + + V Sbjct: 308 TNEQPAADAPKGISKADHDTAVKTARAEGV 337 >gi|84684063|ref|ZP_01011965.1| Peptidase U7 [Maritimibacter alkaliphilus HTCC2654] gi|84667816|gb|EAQ14284.1| Peptidase U7 [Rhodobacterales bacterium HTCC2654] Length = 855 Score = 94.3 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 100/250 (40%), Gaps = 14/250 (5%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQEL 53 + + R S++ ++ N VA I + G + + L Sbjct: 53 RWEARPEAASIIGGSLYRGVKKHAAYLNVQGVAVIPVTGTLVRRGSFVGESSGMTSYEGL 112 Query: 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 +I + D++ A+ + + S GG A + I+ + +KPV + E A SAGY Sbjct: 113 SAQIRAAAEDETVRAIAMEVDSFGGEAAGIFELMADIRAAREKKPVYAFLAEYALSAGYA 172 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 ++ ++ + GSIGV+ + + L+ GV++ + S K + +P+ + + Sbjct: 173 LASQADRVTIPPFGKAGSIGVVVIHADYQTQLENAGVNVTLIHSGKHKVDGNPYQHLKGE 232 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS-DGRIWTGAEAKKVGLIDVVGGQEE 232 +Q D+ + F V + R + + ++TG +A + GL D V Sbjct: 233 VRDRIQQENDAMWLAFAEAVEQGRRGKITAQGAMKLEAGVFTGLDALRYGLADEVIEARA 292 Query: 233 VWQSLYALGV 242 +++L Sbjct: 293 AFEALVEKLN 302 >gi|190570700|ref|YP_001975058.1| Putative minor capsid protein c [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190570754|ref|YP_001975112.1| Putative minor capsid protein c [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190570768|ref|YP_001975126.1| Putative minor capsid protein c [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356972|emb|CAQ54360.1| Putative minor capsid protein c [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357026|emb|CAQ54419.1| Putative minor capsid protein c [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357040|emb|CAQ54434.1| Putative minor capsid protein c [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 348 Score = 94.3 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 104/241 (43%), Gaps = 14/241 (5%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQELIE 55 + + +LSL F H N +A I I G + + + E Sbjct: 11 RRSFELLSLYNSKQPIFKNLKHFHINPKGIAIIRIYGVLTKKTEAFDHILDMTSYENIHE 70 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 IE D S +++ + SPGG + I V+ +K +I ++ A SA Y I+ Sbjct: 71 EIESALEDKSIETILLDIDSPGGEVNGVFDLADFIYGVRGKKRIIAIANDDAYSAAYAIA 130 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 ++ + TS VGSIGV+ + F +K G+ ++ + K + +P + +++ Sbjct: 131 SSAEKVFVCRTSGVGSIGVIASHIDQSGFDEKQGIKYTTIFAGKRKNDLNPHEPMTSESL 190 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 + +Q VD Y FV+L++ +R + +K G + G +A ++GL D V E Sbjct: 191 ESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFIN 249 Query: 236 S 236 Sbjct: 250 K 250 >gi|166154708|ref|YP_001654826.1| exported protease IV [Chlamydia trachomatis 434/Bu] gi|166155583|ref|YP_001653838.1| exported protease IV [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335981|ref|ZP_07224225.1| exported protease IV [Chlamydia trachomatis L2tet1] gi|165930696|emb|CAP04193.1| exported protease IV [Chlamydia trachomatis 434/Bu] gi|165931571|emb|CAP07147.1| exported protease IV [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 331 Score = 94.3 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 60/274 (21%), Positives = 111/274 (40%), Gaps = 14/274 (5%) Query: 30 HVEDNSPHVARIAIRGQIEDSQELIERIERISR-------DDSATALIVSLSSPGGSAYA 82 + +P +A I I I S +R++ + ++V + PGG + Sbjct: 57 ELGKTAPIIAVIDINDAIIASSGAAKRLQSALQPLNEAPYKGRVKGILVKIDCPGGEVFE 116 Query: 83 GEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYP 139 + + + K + PV V + AS GY ++C ++ I +SL+GSIGV Y Sbjct: 117 IDRMCATLSFWKKQWGIPVHVFVSGLCASGGYYVACIADKIGTTSSSLIGSIGVRSGPYF 176 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-N 198 VK L + GV + + KA +PFS + Q +VD+ Y FV V + R Sbjct: 177 NVKEGLQRHGVETAILTAGDDKAPLNPFSSWTEEEYAERQGIVDAFYEQFVDHVVKYRSK 236 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 + +K + R++ +A + GL+D + QE+ + L + ++ Sbjct: 237 LSKEKLTKVLGARVFIAKQALEEGLVDAINQTQEQALEELAEACGIKDNYRVIGLG--SG 294 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 ++ + +S L + Q ++W Sbjct: 295 HFLKRFSSYLSNSPLVTGKLQVTALPDQQQKSLW 328 >gi|294636161|ref|ZP_06714581.1| head-tail preconnector protein GP5 [Edwardsiella tarda ATCC 23685] gi|291090527|gb|EFE23088.1| head-tail preconnector protein GP5 [Edwardsiella tarda ATCC 23685] Length = 498 Score = 94.3 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 95/247 (38%), Gaps = 15/247 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + + R+++ D + +++ + SPGG A Sbjct: 79 NGIAVLPVTGTLVHKLGAMRPFSGMTGYDGITARLQQAISDTAVRGILLDIDSPGGQAAG 138 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I ++ +KP+ ++MA SA LI+ A + +TS +GSIGVL + + Sbjct: 139 AFDCADMIARLGAQKPIWALCNDMACSAAMLIASACAKRLVTQTSTIGSIGVLMAHTSYE 198 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + + Q +D++ F V+ + D Sbjct: 199 KQLAQQGVDITLIYSGAHKVDGNSTQALPDSVRADFQQRIDAARRLFAEKVAMFTGLSVD 258 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ-SLYALGVDQSIRKIKDWNPPKNYWFC 261 + ++ ++G + VGL D + + L +++ + Sbjct: 259 DVMA-TEAATYSGQASIDVGLADGMVNAADALDVMAAELKKRGGAMSVENLTAAEAAAQE 317 Query: 262 DLKNLSI 268 + + + I Sbjct: 318 NQRVMGI 324 >gi|321272319|gb|ADW80201.1| minor capsid protein [Wolbachia endosymbiont wVitB of Nasonia vitripennis phage WOVitB] Length = 336 Score = 93.9 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 108/250 (43%), Gaps = 14/250 (5%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALI 70 F S + N +A I I G + + + E IE D S ++ Sbjct: 19 IFKNSKYFHINPKGIAIIRIYGVLTKKTEAFDHILDMTSYENIHEEIESALEDKSIETIL 78 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + + SPGG + I + +K +I ++ A SA Y I+ ++ + + TS VG Sbjct: 79 LDIDSPGGEVNGVFDLADFIYSARGKKRIIAIANDDAYSAAYAIASSAEKVFVSRTSGVG 138 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ + F +K G+ ++ + K + +P ++ ++++ +Q VD Y FV Sbjct: 139 SIGVIASHIDQSRFDEKQGIKYTTIFAGSRKNDLNPHEQMTSESLESLQKEVDRLYEMFV 198 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 +L++ +RN+ G + G +A ++GL D V E + + V + ++ Sbjct: 199 QLIARNRNLSIQAIKSTEAGLYF-GEKAVEIGLADGVTTFFEFINNHKSRSVSMTTDELI 257 Query: 251 DWNPPKNYWF 260 + N + Sbjct: 258 EENYRREILE 267 >gi|307317075|ref|ZP_07596516.1| peptidase S49 [Sinorhizobium meliloti AK83] gi|306897163|gb|EFN27908.1| peptidase S49 [Sinorhizobium meliloti AK83] Length = 440 Score = 93.9 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 94/226 (41%), Gaps = 14/226 (6%) Query: 35 SPHVARIAIRGQI------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 + +I ++G + + + ER D + + + + SPGG Sbjct: 73 KDGILQIPVKGVLLHNFPYQYGGYATGYFYIWKAFERGLADGNVRGIALIIDSPGGEVAG 132 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + + ++ KPV E A SA Y I+ ++ I + T VGSIGV+ + Sbjct: 133 NFDLVDKMFAHRDEKPVRAYAMESAYSAAYSIASVADSITVSRTGGVGSIGVVTAHVDAS 192 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 +D++G + + + K + +P+ ++P+ +Q +D Y FV V+ +R + Sbjct: 193 KMVDEMGWKVTFIFAGKHKVDGNPYEALSPEVKARIQARIDELYSVFVSTVARNRGMDEK 252 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE-VWQSLYALGVDQSIR 247 + +T ++A GL D +G ++ V L +D+ Sbjct: 253 AVRDT-EALTFTASQATSNGLADHIGTLDDSVAAFAAELSLDEEDE 297 >gi|332534170|ref|ZP_08410018.1| putative capsid assembly protein/protease [Pseudoalteromonas haloplanktis ANT/505] gi|332036459|gb|EGI72928.1| putative capsid assembly protein/protease [Pseudoalteromonas haloplanktis ANT/505] Length = 315 Score = 93.9 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 98/234 (41%), Gaps = 15/234 (6%) Query: 31 VEDNSPHVARIAIRGQ-------IEDS-------QELIERIERISRDDSATALIVSLSSP 76 + H+ + + G I DS + L ++++ DDS +++ ++S Sbjct: 66 DPEKGDHIVVLPVHGILIPRRGSITDSCEEVMSYEFLRTQMQKALNDDSVLEIVLDINSG 125 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GG+A A I + ++ KP+ ++ A S YLI+ A I+ ++T+ VGS+GV Sbjct: 126 GGTAQAAFECAEFIYQARSIKPIRAIINFNAYSGAYLIAAACTEIIISDTAGVGSVGVYQ 185 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + + G + + K P E++ + + ++ +Y FV + + Sbjct: 186 KRLDMTKAYADAGYKMHTFHRGATKVYFHPDVEMSEEERAHTEKNIEKTYQKFVGAIVKY 245 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 R++ ++ L ++ + G A + L D + ++ + V +S Sbjct: 246 RDMSLEQVLA-TEADTYEGQAAIDLKLADRLATPQDAINQIAQGAVQRSSAPTI 298 >gi|58040764|ref|YP_192728.1| bacteriophage minor capsid protein C [Gluconobacter oxydans 621H] gi|58003178|gb|AAW62072.1| Bacteriophage minor capsid protein C [Gluconobacter oxydans 621H] Length = 265 Score = 93.9 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 12/214 (5%) Query: 38 VARIAIRGQIEDSQ-----------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 VA I + G + + ++ + + D + + + + ++SPGG+ Sbjct: 53 VALIPVSGILLPGRGWSWSGATYYQDIRKALNSALDDAAVSRIALMVNSPGGTVSECFDT 112 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 I + + KP+ +++ A SA Y I+ A++ I + GSIG + + + LD Sbjct: 113 AEMIYQARGEKPIWAILNDAAYSAAYAIASAADFITVPQMGGTGSIGCVGMHVDITDALD 172 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 K G+ + + + K + P + + A + Q +D +FV+ V+ +R I D Sbjct: 173 KAGIKVTTFQYGARKTDGYPTTPMTDPARERAQAEIDEMGDFFVQTVARNRAISADVVRN 232 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 G + G ++GL D + EE + L Sbjct: 233 TQAGT-YLGRHGVEIGLADEIATPEEAIAAFLKL 265 >gi|300689946|ref|YP_003750941.1| bacteriophage head-tail preconnector protein GP5 [Ralstonia solanacearum PSI07] gi|299077006|emb|CBJ49620.1| bacteriophage head-tail preconnector protein GP5 [Contains: Scaffold protein GP6 (Head protein GP6)] [Ralstonia solanacearum PSI07] Length = 419 Score = 93.9 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 88/212 (41%), Gaps = 14/212 (6%) Query: 37 HVARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 +A I I G + + ++++ D A+++ + SPGG + Sbjct: 58 QIAVIPIHGTLVRRTVGLEAESGLASYTAIGDQLDAALTDPGIAAILLDVDSPGGESGGV 117 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + I+ KPV ++MA SA Y ++CA++ + + T VGSIGV+ + Sbjct: 118 FDLADRIRAAAAIKPVWVVANDMAFSAAYALACAASRVFVSRTGGVGSIGVIAMHVDQSV 177 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 K GV +V + K + +P + +A +Q V Y FV V+ R + + Sbjct: 178 KDAKDGVRYTAVFAGARKNDLNPHEPLTDEAQAQLQAEVSRIYGLFVATVARYRGLSAET 237 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 G + G +A GL D VG ++ Sbjct: 238 VTATEAGLFF-GQDAVAAGLADAVGTFDDALA 268 >gi|3249702|gb|AAC24140.1| unknown [Enterobacteria phage Felix 01] Length = 442 Score = 93.9 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 103/220 (46%), Gaps = 16/220 (7%) Query: 35 SPHVARIAI---------------RGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79 +A I I G + + L + D+S +++ + S GG Sbjct: 59 KDDIAIIPIMGGLTHRMTFIDAMCTGGLSSYEGLRRGFDEALADESIKTIVLHIDSGGGE 118 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A + R I + +K +I V E A SA Y ++ ++ I+A+ + VGSIGV+ + Sbjct: 119 ASGCFELARHIMASRGQKKIIAYVDEFACSAAYALASSAEEIIASPDADVGSIGVIMVHQ 178 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + +K GV+I +K+ K SPF ++ ++ + +Q ++ +Y F V+ESRN+ Sbjct: 179 ELTKAFEKNGVTINVIKAGEFKGMGSPFQALSEESKERLQKRINDTYATFTGFVAESRNL 238 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + ++ +++ EA ++GLI+ + Q++ L Sbjct: 239 SEEAVKN-TEANVYSAQEALELGLINSIMSQDDFLNYLQG 277 >gi|33770512|ref|NP_892049.1| capsid protein [Yersinia phage PY54] gi|33636095|emb|CAD91764.1| capsid protein [Yersinia phage PY54] Length = 303 Score = 93.9 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 107/257 (41%), Gaps = 21/257 (8%) Query: 4 VLKKIKTRYV--MLSLVTLTVVYFSWSSHVEDNSP----HVARIAIRG------------ 45 ++ IK V ++ ++ T + ++ P +A I + G Sbjct: 25 IMDSIKAVLVPRLMGEMSGTALMAFEPDDQPESEPTQTGSIAVIPVHGILVPRRGQITQA 84 Query: 46 --QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 ++ + + + + D S + +++ + GG+ + + I ++ KP V Sbjct: 85 CTELTSYERIRAQFTKALNDPSVSEIVLDFYTGGGAVSGCKELADYIFASRSVKPSTAIV 144 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 + A SAGY ++ A + IV + TS VGSIGV+ ++ +++G+ + K Sbjct: 145 NYNAFSAGYFMASACSRIVVSHTSGVGSIGVILEHMEASKLEEQIGLKFTTFYRGDFKNA 204 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 SP + +A +Q ++D +Y F V+E R I + + + R + G A GL Sbjct: 205 GSPHEPLTDEATAYLQQLIDDAYETFTTSVAEYRGIDVQRVID-TQARTFFGQAAVDAGL 263 Query: 224 IDVVGGQEEVWQSLYAL 240 D + + ++ A Sbjct: 264 ADELSDPQTAINNIAAK 280 >gi|238801794|ref|YP_002922844.1| putative head maturation protease [Enterobacteria phage WV8] gi|216263007|gb|ACJ71875.1| putative head maturation protease [Enterobacteria phage WV8] Length = 448 Score = 93.9 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 103/220 (46%), Gaps = 16/220 (7%) Query: 35 SPHVARIAI---------------RGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79 +A I I G + + L + D+S +++ + S GG Sbjct: 59 KDDIAIIPIMGGLTHRMTFIDAMCTGGLSSYEGLRRGFDEALADESIKTIVLHIDSGGGE 118 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A + R I + +K +I V E A SA Y ++ ++ I+A+ + VGSIGV+ + Sbjct: 119 ASGCFELARHIMASRGQKKIIAYVDEFACSAAYALASSAEEIIASPDADVGSIGVIMVHQ 178 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + +K GV+I +K+ K SPF ++ ++ + +Q ++ +Y F V+ESRN+ Sbjct: 179 ELTKAFEKNGVTINVIKAGEFKGMGSPFQALSEESKERLQKRINDTYATFTGFVAESRNL 238 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + ++ +++ EA ++GLI+ + Q++ L Sbjct: 239 SEEAVKN-TEANVYSAQEALELGLINSIMSQDDFLNYLQG 277 >gi|38707715|ref|NP_944888.1| Putative head maturation protease [Enterobacteria phage Felix 01] gi|33340318|gb|AAQ14669.1|AF320576_99 unknown [Enterobacteria phage Felix 01] gi|269975290|gb|ACZ55514.1| putative head maturation protease [Staphylococcus phage SA1] Length = 448 Score = 93.9 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 103/220 (46%), Gaps = 16/220 (7%) Query: 35 SPHVARIAI---------------RGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79 +A I I G + + L + D+S +++ + S GG Sbjct: 59 KDDIAIIPIMGGLTHRMTFIDAMCTGGLSSYEGLRRGFDEALADESIKTIVLHIDSGGGE 118 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A + R I + +K +I V E A SA Y ++ ++ I+A+ + VGSIGV+ + Sbjct: 119 ASGCFELARHIMASRGQKKIIAYVDEFACSAAYALASSAEEIIASPDADVGSIGVIMVHQ 178 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + +K GV+I +K+ K SPF ++ ++ + +Q ++ +Y F V+ESRN+ Sbjct: 179 ELTKAFEKNGVTINVIKAGEFKGMGSPFQALSEESKERLQKRINDTYATFTGFVAESRNL 238 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + ++ +++ EA ++GLI+ + Q++ L Sbjct: 239 SEEAVKN-TEANVYSAQEALELGLINSIMSQDDFLNYLQG 277 >gi|331672143|ref|ZP_08372936.1| head-tail preconnector protein GP5 [Escherichia coli TA280] gi|331070691|gb|EGI42053.1| head-tail preconnector protein GP5 [Escherichia coli TA280] Length = 501 Score = 93.5 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPEEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|255348869|ref|ZP_05380876.1| exported protease IV [Chlamydia trachomatis 70] gi|255503409|ref|ZP_05381799.1| exported protease IV [Chlamydia trachomatis 70s] gi|255507087|ref|ZP_05382726.1| exported protease IV [Chlamydia trachomatis D(s)2923] gi|289525538|emb|CBJ15016.1| exported protease IV [Chlamydia trachomatis Sweden2] gi|296435097|gb|ADH17275.1| exported protease IV [Chlamydia trachomatis E/150] gi|296438818|gb|ADH20971.1| exported protease IV [Chlamydia trachomatis E/11023] Length = 331 Score = 93.5 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 60/274 (21%), Positives = 110/274 (40%), Gaps = 14/274 (5%) Query: 30 HVEDNSPHVARIAIRGQIEDS-------QELIERIERISRDDSATALIVSLSSPGGSAYA 82 + +P +A I I I S Q ++ + ++V + PGG + Sbjct: 57 ELGKTAPIIAVIDINDAIMASGGAAKRLQSALQPLNEAPYKGRVKGILVKIDCPGGEVFE 116 Query: 83 GEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYP 139 + + + K + PV V + AS GY ++C ++ I +SL+GSIGV Y Sbjct: 117 IDRMCATLSFWKKQWGIPVHVFVSGLCASGGYYVACIADKIGTTSSSLIGSIGVRSGPYF 176 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-N 198 VK L + GV + + KA +PFS + Q +VD+ Y FV V + R Sbjct: 177 NVKEGLQRHGVETAILTAGDDKAPLNPFSSWTEEEYAERQGIVDAFYEQFVDHVVKYRSK 236 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 + +K + R++ +A + GL+D + QE+ + L + ++ Sbjct: 237 LSKEKLTKVLGARVFIAKQALEEGLVDAINQTQEQALEELAEACGIKDNYRVIGLG--SG 294 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 ++ + +S L + Q ++W Sbjct: 295 HFLKRFSSYLSNSPLVTGKLQVTALPDQQQKSLW 328 >gi|89095506|ref|ZP_01168413.1| peptidase, U7 family protein [Oceanospirillum sp. MED92] gi|89080226|gb|EAR59491.1| peptidase, U7 family protein [Oceanospirillum sp. MED92] Length = 353 Score = 93.5 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 17/243 (6%) Query: 36 PHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 + + G I+ S+ E+ ++ +D +++ L SPGG + Sbjct: 102 KRIYVVDFDGDIKASEVEPLRQEISAILQLAEAEDE---IVIRLESPGGMVHEYGLASSQ 158 Query: 90 IQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 I+++K ++ + V +AAS GY+++C ++ ++AA ++VGSIGV+ Q P L K Sbjct: 159 IERIKRKELSLTICVDRVAASGGYMMACLADKLIAAPFAIVGSIGVIAQLPNFHRLLKKH 218 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 V + + + K + F E K + + ++ ++ F V E R P ++ Sbjct: 219 DVDYEVLTAGEYKRTLTVFGENTEKGREKFVEELEETHELFKNFVHEYR--PQVDIDKVA 276 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 G IW G +A + L+D + ++ IR K L ++ Sbjct: 277 TGEIWFGKQALENQLVDELMTSDQYLIDAAEEADIFEIRY-----EEKKTLQDKLSEFTV 331 Query: 269 SSL 271 S Sbjct: 332 DSG 334 >gi|83645325|ref|YP_433760.1| putative periplasmic protease [Hahella chejuensis KCTC 2396] gi|83633368|gb|ABC29335.1| Periplasmic serine protease (ClpP class) [Hahella chejuensis KCTC 2396] Length = 345 Score = 93.5 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 107/250 (42%), Gaps = 16/250 (6%) Query: 32 EDNSPHVARIAIRGQIEDSQELIERIERISRD-----DSATALIVSLSSPGGSAYAGEAI 86 E + V + G I+ S+ + + ++V L SPGG + Sbjct: 94 EQDKSRVYVLDFDGDIKASE--VSALREAITAVLSLAKPEDEVVVRLESPGGMVHGYGLA 151 Query: 87 FRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 +++++ R +T ++AAS GYL++C +N I+AA S++GSIGV+ Q P L Sbjct: 152 ASQLERIRQRGVNLTVCVDKVAASGGYLMACLANKIIAAPFSIIGSIGVVAQLPNFNRLL 211 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K + + + + K + F E K + ++ ++ F V+ R P Sbjct: 212 KKHDIDYEVLTAGEYKRTLTVFGENTEKGREKFMQDLEETHVLFKEFVATHR--PQVDID 269 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 ++ G +W GA AK + L+D + ++ L + + +++ + Sbjct: 270 EVAKGEVWYGARAKDINLVDAIQTSDD---YLAERCNECEVYQVRYIEKKS---LAEKVG 323 Query: 266 LSISSLLEDT 275 LS+++ LE Sbjct: 324 LSMAASLESL 333 >gi|167739953|ref|ZP_02412727.1| peptidase S49 [Burkholderia pseudomallei 14] Length = 316 Score = 93.5 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 1/192 (0%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 + DD+ +++ + SPGGS Y + I + + RKP+ + +AAS Sbjct: 82 HFAQTFRTALADDAVGGIVLDVDSPGGSVYGVTELADEIYRSRARKPIFAVANSLAASGA 141 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y I+ A++ VG IGV + + L K G+ + + K E +PF + Sbjct: 142 YWIASAASEFYVTPGGEVGDIGVHDIHVDLSKGLQKAGIETTLIAAGKYKTEGNPFHPLG 201 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQ 230 A MQ VD+ Y FV V++ RN+P + GR+ AK+ ++D V Sbjct: 202 ADARAAMQKRVDAYYRAFVAAVAKHRNVPESAVRNGMGQGRLLDAERAKRESMVDGVATL 261 Query: 231 EEVWQSLYALGV 242 +EV L Sbjct: 262 DEVIDGLTRRVG 273 >gi|218688849|ref|YP_002397061.1| head-tail preconnector protein GP5 [Escherichia coli ED1a] gi|218426413|emb|CAR07239.1| Head-tail preconnector protein GP5 [Contains: Scaffold protein GP6 (Head protein GP6)] [Escherichia coli ED1a] Length = 501 Score = 93.5 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 89/217 (41%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPEEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 ++ ++ G + GL D + + + A Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMAA 291 >gi|33340432|gb|AAQ14783.1| unknown [Enterobacteria phage Felix 01] Length = 418 Score = 93.5 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 103/220 (46%), Gaps = 16/220 (7%) Query: 35 SPHVARIAI---------------RGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79 +A I I G + + L + D+S +++ + S GG Sbjct: 29 KDDIAIIPIMGGLTHRMTFIDAMCTGGLSSYEGLRRGFDEALADESIKTIVLHIDSGGGE 88 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A + R I + +K +I V E A SA Y ++ ++ I+A+ + VGSIGV+ + Sbjct: 89 ASGCFELARHIMASRGQKKIIAYVDEFACSAAYALASSAEEIIASPDADVGSIGVIMVHQ 148 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + +K GV+I +K+ K SPF ++ ++ + +Q ++ +Y F V+ESRN+ Sbjct: 149 ELTKAFEKNGVTINVIKAGEFKGMGSPFQALSEESKERLQKRINDTYATFTGFVAESRNL 208 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + ++ +++ EA ++GLI+ + Q++ L Sbjct: 209 SEEAVKN-TEANVYSAQEALELGLINSIMSQDDFLNYLQG 247 >gi|222148703|ref|YP_002549660.1| Periplasmic serine proteases (ClpP class) [Agrobacterium vitis S4] gi|221735689|gb|ACM36652.1| Periplasmic serine proteases (ClpP class) [Agrobacterium vitis S4] Length = 306 Score = 93.5 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 88/221 (39%), Gaps = 14/221 (6%) Query: 36 PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 ++A I + G + Q L ++ + ++ S GG Sbjct: 84 DNIAIIPVEGSLVHKGGWVGSASGETSYQGLQAQVAAARKYAGVKGVVFEYDSYGGEVNG 143 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 G A+Q + KP + + + A SAGYL++ + IV E GSIGV+ + Sbjct: 144 GFETAAAMQALSREKPTLAILTDFAYSAGYLLASQARGIVMPEFGGAGSIGVIIMHADYS 203 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L++ G+ + ++S KA+ +P+ ++ Q D F V++ R Sbjct: 204 QALEQDGIKVTIIRSGKKKADGNPYEPLSADVADRWQAQADQMRDKFAETVAKGRKNRIT 263 Query: 203 KTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 K L S+ ++ +A +GL+D +G E + + Sbjct: 264 KAKALASEADVYDAKQALSMGLVDAIGDPIEAFDAFVKEVN 304 >gi|15605222|ref|NP_220008.1| protease [Chlamydia trachomatis D/UW-3/CX] gi|76789231|ref|YP_328317.1| protease IV [Chlamydia trachomatis A/HAR-13] gi|237802922|ref|YP_002888116.1| exported protease IV [Chlamydia trachomatis B/Jali20/OT] gi|237804844|ref|YP_002888998.1| exported protease IV [Chlamydia trachomatis B/TZ1A828/OT] gi|255311310|ref|ZP_05353880.1| exported protease IV [Chlamydia trachomatis 6276] gi|255317611|ref|ZP_05358857.1| exported protease IV [Chlamydia trachomatis 6276s] gi|6578107|gb|AAC68094.2| Protease [Chlamydia trachomatis D/UW-3/CX] gi|76167761|gb|AAX50769.1| protease IV [Chlamydia trachomatis A/HAR-13] gi|231273144|emb|CAX10057.1| exported protease IV [Chlamydia trachomatis B/TZ1A828/OT] gi|231274156|emb|CAX10950.1| exported protease IV [Chlamydia trachomatis B/Jali20/OT] gi|296436025|gb|ADH18199.1| exported protease IV [Chlamydia trachomatis G/9768] gi|296437886|gb|ADH20047.1| exported protease IV [Chlamydia trachomatis G/11074] gi|297140386|gb|ADH97144.1| exported protease IV [Chlamydia trachomatis G/9301] Length = 331 Score = 93.5 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 60/274 (21%), Positives = 110/274 (40%), Gaps = 14/274 (5%) Query: 30 HVEDNSPHVARIAIRGQIEDS-------QELIERIERISRDDSATALIVSLSSPGGSAYA 82 + +P +A I I I S Q ++ + ++V + PGG + Sbjct: 57 ELGKTAPIIAVIDINDAIMASGGAAKRLQSALQPLNEAPYKGRVKGILVKIDCPGGEVFE 116 Query: 83 GEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYP 139 + + + K + PV V + AS GY ++C ++ I +SL+GSIGV Y Sbjct: 117 IDRMCATLSFWKKQWGIPVHVFVSGLCASGGYYVACIADKIGTTSSSLIGSIGVRSGPYF 176 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-N 198 VK L + GV + + KA +PFS + Q +VD+ Y FV V + R Sbjct: 177 SVKEGLQRHGVETAILTAGDDKAPLNPFSSWTEEEYAERQGIVDAFYEQFVDHVVKYRSK 236 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 + +K + R++ +A + GL+D + QE+ + L + ++ Sbjct: 237 LSKEKLTKVLGARVFIAKQALEEGLVDAINQTQEQALEELAEACGIKDNYRVIGLG--SG 294 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 ++ + +S L + Q ++W Sbjct: 295 HFLKRFSSYLSNSPLVTGKLQVTALPDQQQKSLW 328 >gi|255318358|ref|ZP_05359591.1| putative protease SohB [Acinetobacter radioresistens SK82] gi|262378588|ref|ZP_06071745.1| signal peptide peptidase SppA, 36K type [Acinetobacter radioresistens SH164] gi|255304350|gb|EET83534.1| putative protease SohB [Acinetobacter radioresistens SK82] gi|262299873|gb|EEY87785.1| signal peptide peptidase SppA, 36K type [Acinetobacter radioresistens SH164] Length = 320 Score = 93.5 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 108/265 (40%), Gaps = 21/265 (7%) Query: 32 EDNSPHVARIAIRGQIEDS--QELIERI------ERISRDDSATALIVSLSSPGGSAYAG 83 + N+ + I +G ++ S + L E I + +D ++V L SPGG + Sbjct: 53 KKNNQKIYVIDFKGDVQASAVENLREEITLILATAKAGKDR----VVVRLESPGGMVHGY 108 Query: 84 EAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + ++++ + V ++AAS GY+++C +N I+ A ++VGSIGV+ Q P Sbjct: 109 GLAAAQLVRLRDAGFHLTICVDKVAASGGYMMACIANEIITAPFAVVGSIGVVAQVPNFN 168 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + V + + K + F E P+ + + ++ F V + R P Sbjct: 169 RLLKEHNVDFELYTAGEYKRTVTMFGENTPEGKAKFEQELQQTHALFKHFVEKYR--PKL 226 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 ++ G W G +A + L+D + +E S + + + + Sbjct: 227 NVEKVATGEHWYGQDALDLNLVDELKTSDEYLLSAL------PQHDVYVISTRRKPTLGE 280 Query: 263 LKNLSISSLLEDTIPLMKQTKVQGL 287 L + + + +P + + L Sbjct: 281 KLGLQAAQMADALVPAVLNKVMDTL 305 >gi|300937014|ref|ZP_07151882.1| putative signal peptide peptidase SppA [Escherichia coli MS 21-1] gi|300457896|gb|EFK21389.1| putative signal peptide peptidase SppA [Escherichia coli MS 21-1] Length = 308 Score = 93.5 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPEEIRQDMQQRIDAARRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|218689829|ref|YP_002398041.1| head-tail preconnector protein GP5 [Escherichia coli ED1a] gi|218427393|emb|CAR08290.2| Head-tail preconnector protein GP5 [Contains: Scaffold protein GP6 (Head protein GP6)] [Escherichia coli ED1a] Length = 501 Score = 93.5 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 89/217 (41%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPEEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 ++ ++ G + GL D + + + A Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMAA 291 >gi|188491998|ref|ZP_02999268.1| head-tail preconnector gp5 [Escherichia coli 53638] gi|188495988|ref|ZP_03003258.1| head-tail preconnector gp5 [Escherichia coli 53638] gi|188487197|gb|EDU62300.1| head-tail preconnector gp5 [Escherichia coli 53638] gi|188491187|gb|EDU66290.1| head-tail preconnector gp5 [Escherichia coli 53638] Length = 501 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 89/216 (41%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + + K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 DHLAQAGVDITLIYAGSHKVDGNHFEALPAEVRQDMQQRIDAARRMFAEKVAMYTGLTVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 + ++ ++ G + GL D + + + Sbjct: 256 AVMG-TEAAVFEGQTGIEAGLADELINASDAISVMA 290 >gi|320176913|gb|EFW51941.1| Head-tail preconnector protein GP5 [Shigella dysenteriae CDC 74-1112] Length = 490 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 89/216 (41%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + + K + + F + + Q MQ +D+++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRIDAAHRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|187733565|ref|YP_001879921.1| head-tail preconnector protein GP5 [Shigella boydii CDC 3083-94] gi|187430557|gb|ACD09831.1| head-tail preconnector protein GP5 [Shigella boydii CDC 3083-94] Length = 501 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 89/216 (41%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + + K + + F + + Q MQ +D+++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRIDAAHRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|170717550|ref|YP_001784638.1| periplasmic protease [Haemophilus somnus 2336] gi|168825679|gb|ACA31050.1| Peptidase S49 domain protein [Haemophilus somnus 2336] Length = 352 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 56/258 (21%), Positives = 113/258 (43%), Gaps = 17/258 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 E PH+ + +G I S+ E+ I DD +++ L SPGG + Sbjct: 99 AEKRKPHLFVLHFKGDISASETTALREEISAIIAVAKEDDE---VLLRLESPGGVVHGYG 155 Query: 85 AIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + ++K R +T V ++AAS GY+++C ++ I++A +++GSIGV+ Q P + Sbjct: 156 LAASQLARLKQRNIKLTVAVDKVAASGGYMMACVADKIISAPFAIIGSIGVVAQIPNIHR 215 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K + + + + K + E K Q ++ ++ F + V+++R P+ Sbjct: 216 LLKKHDIDVDVMTAGEYKRTMTILGENTEKGKAKFQQDLEDTHLLFKQFVTQNR--PHLD 273 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + L+D + +++ S++ + K L Sbjct: 274 IDKIATGEHWFGKQALALHLVDEIATSDDLLLQAIKDKTVLSVKYMM-----KKSLIQKL 328 Query: 264 KNLSISSLLEDTIPLMKQ 281 + S + L+K+ Sbjct: 329 GKQAEESANNVLLRLLKR 346 >gi|218704576|ref|YP_002412095.1| Head-tail preconnector protein GP5 [Escherichia coli UMN026] gi|293404456|ref|ZP_06648450.1| scaffold protein GP6 [Escherichia coli FVEC1412] gi|298380232|ref|ZP_06989837.1| scaffold protein GP6 [Escherichia coli FVEC1302] gi|300895932|ref|ZP_07114503.1| putative signal peptide peptidase SppA [Escherichia coli MS 198-1] gi|218431673|emb|CAR12555.1| Head-tail preconnector protein GP5 [Contains: Scaffold protein GP6 (Head protein GP6)] [Escherichia coli UMN026] gi|291429042|gb|EFF02067.1| scaffold protein GP6 [Escherichia coli FVEC1412] gi|298279930|gb|EFI21438.1| scaffold protein GP6 [Escherichia coli FVEC1302] gi|300360143|gb|EFJ76013.1| putative signal peptide peptidase SppA [Escherichia coli MS 198-1] Length = 482 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 89/216 (41%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + + K + + F + + Q MQ +D+++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRIDAAHRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|292488385|ref|YP_003531267.1| putative protease [Erwinia amylovora CFBP1430] gi|292899581|ref|YP_003538950.1| peptidase [Erwinia amylovora ATCC 49946] gi|291199429|emb|CBJ46546.1| putative peptidase [Erwinia amylovora ATCC 49946] gi|291553814|emb|CBA20859.1| putative protease [Erwinia amylovora CFBP1430] gi|312172528|emb|CBX80784.1| putative protease [Erwinia amylovora ATCC BAA-2158] Length = 349 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 116/265 (43%), Gaps = 18/265 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 V P + I +G ++ + E+ + + D +++ L SPGG + Sbjct: 96 VNGGKPTLYVIDFKGSMDAGEVSSLREEVSAVMAVAEKGDE---VLLRLESPGGVVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T V ++AAS GY+++C ++ IVAA S++GSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVAVDKVAASGGYMMACVADRIVAAPFSIIGSIGVVAQIPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L + + ++ + K + F E + + ++ ++ ++ F + V + R P Sbjct: 213 LLKRNEIDVELHTAGEYKRTLTLFGENTEQGREKFREELNETHQLFKQFVHQMR--PTLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D +G +++ ++ + D Sbjct: 271 IDSIATGEHWYGQQALEKGLVDAIGTSDDLIIDHIEKH------QVIGVRYARRKGMIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S +S LE + + Q + L Sbjct: 325 FTQSATSSLERLLLRIWQRGDKPLL 349 >gi|327253287|gb|EGE64936.1| head-tail preconnector protein GP5 [Escherichia coli STEC_7v] Length = 501 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 89/216 (41%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D+++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQKRIDAAHRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|218700220|ref|YP_002407849.1| head-tail preconnector protein GP5 [Escherichia coli IAI39] gi|218370206|emb|CAR18001.1| Head-tail preconnector protein GP5 [Contains: Scaffold protein GP6 (Head protein GP6)] [Escherichia coli IAI39] Length = 501 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 90/217 (41%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + + K + + F + + Q MQ VD+++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRVDAAHRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 ++ ++ G + GL D + + + A Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMAA 291 >gi|218694807|ref|YP_002402474.1| Head-tail preconnector protein GP5 [Contains: Scaffold protein GP6 (Head protein GP6)] [Escherichia coli 55989] gi|218351539|emb|CAU97251.1| Head-tail preconnector protein GP5 [Contains: Scaffold protein GP6 (Head protein GP6)] [Escherichia coli 55989] Length = 501 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 90/217 (41%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + + K + + F + + Q MQ +D+++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRIDAAHRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 ++ ++ G + GL D + + + A Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMAA 291 >gi|323962536|gb|EGB58116.1| peptidase S49 [Escherichia coli H489] Length = 501 Score = 93.1 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 89/216 (41%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + + K + + F + + Q MQ +D+++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRIDAAHRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|317485330|ref|ZP_07944210.1| peptidase family S49 [Bilophila wadsworthia 3_1_6] gi|316923456|gb|EFV44662.1| peptidase family S49 [Bilophila wadsworthia 3_1_6] Length = 401 Score = 93.1 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 46/211 (21%), Positives = 92/211 (43%), Gaps = 13/211 (6%) Query: 38 VARIAIRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 VA I + G I + ++ D SA A++ ++SPGG + + A Sbjct: 47 VAVIPVSGAIVREQGWYGTGQDAVASSLKAALADPSARAILFDITSPGGVVAGTKELADA 106 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 I + + +K + + ASA Y ++ A+ + A T+ VGSIGV+ +K G Sbjct: 107 IAEARTKKHCAAYANGLCASAAYWLASATGTVYAPLTATVGSIGVIMTITNYAKLEEKWG 166 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS- 208 +S ++ KA E+ + + Q+ +++ + F V R++ L Sbjct: 167 ISTVTITGGKWKAAGQ-GGELTDEERRYFQERINTLHQIFKADV--GRHMGLTADPQLWG 223 Query: 209 DGRIWTGAEAKKVGLI-DVVGGQEEVWQSLY 238 + ++ A+++GL+ D+V ++ + L Sbjct: 224 EAQLLLAQPARELGLVTDIVRDRDAAIRKLA 254 >gi|127513335|ref|YP_001094532.1| putative periplasmic protease [Shewanella loihica PV-4] gi|126638630|gb|ABO24273.1| Peptidase S49, N-terminal domain protein [Shewanella loihica PV-4] Length = 343 Score = 93.1 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 59/282 (20%), Positives = 109/282 (38%), Gaps = 16/282 (5%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERI 60 K+ K L + +P V I +G I +E I I I Sbjct: 66 KQFKAYEKGLKAEAKAKEKAEKADGEAAPTPRVFVIDFKGSIDAHEVASLREEISAILAI 125 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASN 119 + ++V++ S GG + + +++ P+ V ++AAS GY+++C +N Sbjct: 126 AE--PGDEVVVNVESGGGMVHGYGLAASQLDRLRSAEIPLTICVDKVAASGGYMMACVAN 183 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 I AA ++VGSIGV+ Q P L K + + + K + F E + Q Q Sbjct: 184 TIYAAPFAIVGSIGVVAQIPNFNRLLKKHDIDYEQHTAGDFKRTLTLFGENTDEGRQKFQ 243 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + ++ ++ F +S+ R P ++ G W G +A +GL+D + ++V L Sbjct: 244 EELEETHVLFKAFISKYR--PTLDIAKVATGEHWYGQQALDLGLVDGLSTSDDVVMKLAE 301 Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 + + D S S + + + Sbjct: 302 ------EKTVIKVRYQLKKKIADKLAHSASLAVNAVFNRLAE 337 >gi|301017487|ref|ZP_07182178.1| putative signal peptide peptidase SppA [Escherichia coli MS 69-1] gi|300400179|gb|EFJ83717.1| putative signal peptide peptidase SppA [Escherichia coli MS 69-1] Length = 501 Score = 93.1 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 89/216 (41%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + + K + + F + + Q MQ +D+++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRIDAAHRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|251792473|ref|YP_003007199.1| putative periplasmic protease [Aggregatibacter aphrophilus NJ8700] gi|247533866|gb|ACS97112.1| S49 family peptidase [Aggregatibacter aphrophilus NJ8700] Length = 353 Score = 93.1 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 111/265 (41%), Gaps = 18/265 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 ++ + + +G I ++ E+ I+ DD +++ L SPGG + Sbjct: 100 EDEQKTTLYVLNFKGDIAATETAALREEISAIIQTAKNDDE---VLLCLESPGGMVHGYG 156 Query: 85 AIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + ++K +T V ++AAS GY+++C ++ I++A +++GSIGV+ Q P V Sbjct: 157 LAASQLARLKQHGIKLTVAVDKVAASGGYMMACVADKIISAPFAVIGSIGVVAQIPNVHR 216 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K V + + + K + E K Q Q +D ++ F + VS++R P+ Sbjct: 217 LLKKHDVDVDVMTAGEYKRTMTILGENTEKGKQKFQQELDETHQLFKQFVSQNR--PHLD 274 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A ++ L+D + ++V +++ Sbjct: 275 VDSVATGEHWFGQQALQLNLVDEIMTSDDVLLQAIK------EKRVIGIKYSVKKSLLQK 328 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 + ++ + + + L Sbjct: 329 LGKQVEESADNLLLRLLKRNENNLM 353 >gi|120598431|ref|YP_963005.1| putative periplasmic protease [Shewanella sp. W3-18-1] gi|120558524|gb|ABM24451.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Shewanella sp. W3-18-1] Length = 338 Score = 92.8 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 57/246 (23%), Positives = 107/246 (43%), Gaps = 10/246 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGE 84 + + + V I +G I+ ++ L E I I + ++V++ S GG + Sbjct: 84 KTEGDTSKGKVFVIDFKGSIDAAEVASLREEISAILAIAEKGDEVVVNVESGGGMVHGYG 143 Query: 85 AIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + ++ + P+ V ++AAS GY+++C +N I AA ++VGSIGV+ Q P Sbjct: 144 LASSQLDRLRQADIPLTVCVDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQLPNFNR 203 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K + + + K + F E + Q Q+ ++ ++ F VS+ R P Sbjct: 204 LLKKHEIDYEQHTAGDFKRTLTVFGENTDEGRQKFQEELEETHVLFKAFVSKYR--PELN 261 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A ++GL+D + ++V SL + + K Sbjct: 262 LEKVATGEHWYGQQAIELGLVDEILTSDDVVMSLAKDRKVYKL----RYQVKKKLADKIA 317 Query: 264 KNLSIS 269 S+S Sbjct: 318 HGASLS 323 >gi|26247317|ref|NP_753357.1| putative capsid assembly protein of prophage [Escherichia coli CFT073] gi|26107718|gb|AAN79917.1|AE016759_191 Putative capsid assembly protein of prophage [Escherichia coli CFT073] Length = 501 Score = 92.8 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + + K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|18314240|ref|NP_560907.1| protease IV, conjectural [Pyrobaculum aerophilum str. IM2] gi|18161836|gb|AAL65089.1| protease IV, conjectural [Pyrobaculum aerophilum str. IM2] Length = 608 Score = 92.8 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 102/266 (38%), Gaps = 18/266 (6%) Query: 29 SHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + + + I D LI+ ++++ D+ +I+ ++SPGG+ A E + Sbjct: 78 EKRAAAEREIVIVPVDQPIFDYYVDFLIKYVKKLQFDNKTAGVILLINSPGGAVGATERL 137 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 + I+ + K V V +AAS Y + A+ I A +S VGSIGV+ + +D Sbjct: 138 YSTIKGL--NKTVYAVVAGLAASGAYYTAVAAGRIYATPSSWVGSIGVVALLWPDEYLID 195 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 + + P K + + ++ + FV V + R Sbjct: 196 ---LPDYIYTTGPFKYYGM--------DLTEFYNDIEKTRANFVAAVLKGRAGRLKADPE 244 Query: 207 LS-DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 + +I+ A ++GLID +GG + + + ++ + + F + Sbjct: 245 VFETAKIFNAETALRLGLIDKIGGLWDAVEDMARELGLKNYTVVDIYEKYNATGFGIVVP 304 Query: 266 LSISSLLEDTIPLMKQTKVQGLWAVW 291 L + + + + ++ +W Sbjct: 305 LISGNKIP--LQFLMNVSAPPVFYLW 328 >gi|315295105|gb|EFU54440.1| putative signal peptide peptidase SppA [Escherichia coli MS 153-1] Length = 501 Score = 92.8 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|91793823|ref|YP_563474.1| putative periplasmic protease [Shewanella denitrificans OS217] gi|91715825|gb|ABE55751.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Shewanella denitrificans OS217] Length = 337 Score = 92.8 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 54/260 (20%), Positives = 108/260 (41%), Gaps = 14/260 (5%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGS 79 + E V I +G I+ ++ E+ + DD +IV++ S GG Sbjct: 81 AKEKQDEVKQATVFVIDFKGSIDANEVSSLREEITAILTIAEADDE---VIVNVESGGGM 137 Query: 80 AYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + + +++ + ++AAS GY+++C +N I AA ++VGSIGV+ Q Sbjct: 138 VHGYGLAASQLDRLRQANIKFSVCIDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQL 197 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P L K + + + K + F + + Q ++ ++ F V + R Sbjct: 198 PNFHRLLQKHDIDYEQHTAGDFKRTLTLFGQNTQEGRDKFQQELEETHVLFKSFVGQYR- 256 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P ++ G W G +A ++GLID + ++V +L ++ + Sbjct: 257 -PEMDIAKVATGEHWYGQQAIELGLIDAISTSDDVLLNLAKEHRVIKVKY--QIKKKLSD 313 Query: 259 WFCDLKNLSISSLLEDTIPL 278 +LS+SS++ + + Sbjct: 314 KLAHGVSLSVSSIVNRLMEI 333 >gi|315285962|gb|EFU45400.1| putative signal peptide peptidase SppA [Escherichia coli MS 110-3] Length = 494 Score = 92.8 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|331673505|ref|ZP_08374273.1| head-tail preconnector protein GP5 [Escherichia coli TA280] gi|331069703|gb|EGI41090.1| head-tail preconnector protein GP5 [Escherichia coli TA280] Length = 492 Score = 92.8 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 89/227 (39%), Gaps = 14/227 (6%) Query: 35 SPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 +A + + G + L R++ D +++ + SPGG A Sbjct: 75 KNGIAILPVSGTLVHKLGTLRPYSGMTGYDGLTARLQMAVNDPDVRGILLDIDSPGGQAA 134 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 I +++ +KPV ++MA SA L++ A + +T+ +GSIGV+ + Sbjct: 135 GAFDCADMIYRLREQKPVWALCNDMACSAAMLLAAACTHRLVTQTAKIGSIGVMMAHTSY 194 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + L + GV I + S K + + + Q +D + FV V+ + Sbjct: 195 EKQLAQEGVDITLIYSGQHKVDGNSIQALPAGVRADFQRRIDEARRMFVDKVARYTGLSS 254 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + + ++ ++ G GL D + + + + + D ++ Sbjct: 255 EAVMN-TEAAVYDGQAGIDAGLADQLINAADAVEVMVSALNDSVTKE 300 >gi|300973765|ref|ZP_07172333.1| putative signal peptide peptidase SppA [Escherichia coli MS 45-1] gi|300410689|gb|EFJ94227.1| putative signal peptide peptidase SppA [Escherichia coli MS 45-1] Length = 391 Score = 92.8 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|91210342|ref|YP_540328.1| bacteriophage head-tail preconnector protein gp5 [Escherichia coli UTI89] gi|117623353|ref|YP_852266.1| head-tail preconnector protein gp5 of bacteriophage [Escherichia coli APEC O1] gi|218558060|ref|YP_002390973.1| head-tail preconnector protein GP5 [Escherichia coli S88] gi|549296|sp|P36273|VG05_BPP21 RecName: Full=Head-tail preconnector protein GP5; AltName: Full=Putative peptidase GP5; Contains: RecName: Full=Scaffold protein GP6; AltName: Full=Head protein GP6 gi|423861|pir||JN0539 head protein gp5 - phage 21 gi|215459|gb|AAA32343.1| head-tail preconnector gp5 [Phage 21] gi|91071916|gb|ABE06797.1| head-tail preconnector protein gp5 of bacteriophage [Escherichia coli UTI89] gi|115512477|gb|ABJ00552.1| head-tail preconnector protein gp5 of bacteriophage [Escherichia coli APEC O1] gi|218364829|emb|CAR02521.1| Head-tail preconnector protein GP5 [Contains: Scaffold protein GP6 (Head protein GP6)] [Escherichia coli S88] gi|307627348|gb|ADN71652.1| Head-tail preconnector protein GP5 (Contains: Scaffold protein GP6 (Head protein GP6)) [Escherichia coli UM146] gi|323953610|gb|EGB49475.1| peptidase S49 [Escherichia coli H252] Length = 501 Score = 92.8 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|321272257|gb|ADW80142.1| phage minor capsid protein [Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1] Length = 343 Score = 92.8 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 59/265 (22%), Positives = 114/265 (43%), Gaps = 14/265 (5%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQELIE 55 + + +LSL F S + N +A I I G + + + E Sbjct: 11 RRSFELLSLYNSKQPIFKNSKYFHINPKGIAIIRIYGVLTKKTEAFDHILDMTSYENIHE 70 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 IE D S +++ + SPGG + I + +K +I ++ A SA Y I+ Sbjct: 71 EIESALEDKSIETILLDIDSPGGEVNGVFDLADFIYSARGKKRIIAIANDDAYSAAYAIA 130 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 ++ + + TS VGSIGV+ + F +K G+ ++ + K + +P ++ +++ Sbjct: 131 SSAEKVFVSRTSGVGSIGVIASHIDQSRFDEKQGIKYTTIFAGSRKNDLNPHEQMTSESL 190 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 + +Q VD Y FV+L++ +RN+ G + G +A ++GL D V E Sbjct: 191 ESLQKEVDRLYEMFVQLIARNRNLSIQAIKSTEAGLYF-GEKAVEIGLADGVTTFFEFIN 249 Query: 236 SLYALGVDQSIRKIKDWNPPKNYWF 260 + + V + ++ + N + Sbjct: 250 NHKSRSVSMTTDELIEENYRREILE 274 >gi|26247441|ref|NP_753481.1| putative capsid assembly protein of prophage [Escherichia coli CFT073] gi|227886459|ref|ZP_04004264.1| head-tail preconnector protein gp5 of bacteriophage [Escherichia coli 83972] gi|300992399|ref|ZP_07179897.1| putative signal peptide peptidase SppA [Escherichia coli MS 200-1] gi|301046454|ref|ZP_07193609.1| putative signal peptide peptidase SppA [Escherichia coli MS 185-1] gi|26107842|gb|AAN80041.1|AE016759_315 Putative capsid assembly protein of prophage [Escherichia coli CFT073] gi|227836663|gb|EEJ47129.1| head-tail preconnector protein gp5 of bacteriophage [Escherichia coli 83972] gi|300301568|gb|EFJ57953.1| putative signal peptide peptidase SppA [Escherichia coli MS 185-1] gi|300305350|gb|EFJ59870.1| putative signal peptide peptidase SppA [Escherichia coli MS 200-1] gi|307553180|gb|ADN45955.1| head-tail preconnector protein gp5 of bacteriophage [Escherichia coli ABU 83972] Length = 501 Score = 92.8 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|297748624|gb|ADI51170.1| protease IV [Chlamydia trachomatis D-EC] gi|297749504|gb|ADI52182.1| protease IV [Chlamydia trachomatis D-LC] Length = 346 Score = 92.8 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 60/274 (21%), Positives = 110/274 (40%), Gaps = 14/274 (5%) Query: 30 HVEDNSPHVARIAIRGQIEDS-------QELIERIERISRDDSATALIVSLSSPGGSAYA 82 + +P +A I I I S Q ++ + ++V + PGG + Sbjct: 72 ELGKTAPIIAVIDINDAIMASGGAAKRLQSALQPLNEAPYKGRVKGILVKIDCPGGEVFE 131 Query: 83 GEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYP 139 + + + K + PV V + AS GY ++C ++ I +SL+GSIGV Y Sbjct: 132 IDRMCATLSFWKKQWGIPVHVFVSGLCASGGYYVACIADKIGTTSSSLIGSIGVRSGPYF 191 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-N 198 VK L + GV + + KA +PFS + Q +VD+ Y FV V + R Sbjct: 192 SVKEGLQRHGVETAILTAGDDKAPLNPFSSWTEEEYAERQGIVDAFYEQFVDHVVKYRSK 251 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 + +K + R++ +A + GL+D + QE+ + L + ++ Sbjct: 252 LSKEKLTKVLGARVFIAKQALEEGLVDAINQTQEQALEELAEACGIKDNYRVIGLG--SG 309 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 ++ + +S L + Q ++W Sbjct: 310 HFLKRFSSYLSNSPLVTGKLQVTALPDQQQKSLW 343 >gi|117623499|ref|YP_852412.1| putative capsid assembly protein of prophage [Escherichia coli APEC O1] gi|218558219|ref|YP_002391132.1| head-tail preconnector protein GP5 [Escherichia coli S88] gi|115512623|gb|ABJ00698.1| putative capsid assembly protein of prophage [Escherichia coli APEC O1] gi|218364988|emb|CAR02692.1| Head-tail preconnector protein GP5 [Contains: Scaffold protein GP6 (Head protein GP6)] [Escherichia coli S88] gi|323949753|gb|EGB45638.1| peptidase S49 [Escherichia coli H252] Length = 501 Score = 92.8 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|323186697|gb|EFZ72020.1| head-tail preconnector protein GP5 [Escherichia coli RN587/1] Length = 501 Score = 92.8 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 87/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQVAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELVNASDAISVMA 290 >gi|260856233|ref|YP_003230124.1| putative head protein/prohead protease [Escherichia coli O26:H11 str. 11368] gi|260866916|ref|YP_003233318.1| putative head protein/prohead protease [Escherichia coli O111:H- str. 11128] gi|257754882|dbj|BAI26384.1| putative head protein/prohead protease [Escherichia coli O26:H11 str. 11368] gi|257763272|dbj|BAI34767.1| putative head protein/prohead protease [Escherichia coli O111:H- str. 11128] gi|323156570|gb|EFZ42718.1| head-tail preconnector GP5 [Escherichia coli EPECa14] Length = 501 Score = 92.8 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|323977132|gb|EGB72219.1| peptidase S49 [Escherichia coli TW10509] Length = 501 Score = 92.4 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + + K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|331650031|ref|ZP_08351104.1| head-tail preconnector protein GP5 [Escherichia coli M605] gi|331040976|gb|EGI13133.1| head-tail preconnector protein GP5 [Escherichia coli M605] Length = 501 Score = 92.4 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 87/217 (40%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D S +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVTCLQQAMADTSVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++MA SA L++ A + + +T+ GSIGV+ + + Sbjct: 136 AFDCADMIYRLREQKPVWALCNDMACSAAMLLAAACSRRLITQTAKTGSIGVMMAHTSYE 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + + Q +D + F V+ + D Sbjct: 196 KQLAQDGVDITLIYSGQRKVDGNSIQALPAGVRADFQQRIDEARRMFAEKVAIYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + ++ ++ G + GL D + + + A Sbjct: 256 AVME-TEAAVFDGQSGIEAGLADELINASDAIDVMAA 291 >gi|311694855|gb|ADP97728.1| capsid protein of prophage [marine bacterium HP15] Length = 441 Score = 92.4 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 96/229 (41%), Gaps = 19/229 (8%) Query: 26 SWSSHVEDNSPH-----VARIAIRGQ-------------IEDSQELIERIERISRDDSAT 67 S+ S N P+ +A I + G + +I R+E D + Sbjct: 57 SFGSDRPRNRPYEVLNGIALIPVAGTLVHKFGHLQPYSGMTGYDGIIARVEEALADPTVN 116 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +++ + +PGG R + +++ +KP+ + ++MA SAG + A++ ++ Sbjct: 117 GILLDMDTPGGEVAGCFDTARRLNELRGQKPIASISYDMACSAGMALHSATDYRYTTTSA 176 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 GS+GV+ + + L G+ + + S K + +P+ + + + Q D + Sbjct: 177 RTGSVGVVMMHASFEEQLKANGIDVTLIHSGAFKVDGNPYENLPEQVLARFQAESDRLRN 236 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 F +V+ + L ++ I+TG +A + G D + ++ + Sbjct: 237 EFADMVATHIGLSASDVLA-TEAAIYTGQDAIEAGFADELINGHDMLAA 284 >gi|197261841|ref|ZP_03161915.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197240096|gb|EDY22716.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 498 Score = 92.4 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 86/217 (39%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + + R+++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHKLGGMRPFSGMTGYDGITARLQQAVSDPEVKGILLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV +E A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRMREQKPVWALANETACSAAMLLAAACSHRLVTQTSRMGSIGVVMAHTSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + G+ I + S KA+ +P ++ Q +D + F V+ + D Sbjct: 196 EKLKQEGIDITLIYSGAHKADLTPSQKLPESVHADYQQRMDEARKMFAEKVARYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + ++ ++ G GL D + + + Sbjct: 256 AVMA-TEAAVYDGQAIITTGLADGMVNAADAIGVMAE 291 >gi|113460984|ref|YP_719051.1| putative periplasmic protease [Haemophilus somnus 129PT] gi|112823027|gb|ABI25116.1| inner membrane peptidase, Serine peptidase, MEROPS family S49 [Haemophilus somnus 129PT] Length = 347 Score = 92.4 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 56/258 (21%), Positives = 113/258 (43%), Gaps = 17/258 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 E PH+ + +G I S+ E+ I DD +++ L SPGG + Sbjct: 94 AEKRKPHLFVLHFKGDISASETTALREEISAIIAVAKEDDE---VLLRLESPGGVVHGYG 150 Query: 85 AIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + ++K R +T V ++AAS GY+++C ++ I++A +++GSIGV+ Q P + Sbjct: 151 LAASQLARLKQRNIKLTVAVDKVAASGGYMMACVADKIISAPFAIIGSIGVVAQIPNIHR 210 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K + + + + K + E K Q ++ ++ F + V+++R P+ Sbjct: 211 LLKKHDIDVDVMTAGEYKRTMTILGENTEKGKAKFQQDLEDTHLLFKQFVTQNR--PHLD 268 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + L+D + +++ S++ + K L Sbjct: 269 IDKIATGEHWFGKQALALHLVDEIATSDDLLLQAIKGKTVLSVKYMM-----KKSLIQKL 323 Query: 264 KNLSISSLLEDTIPLMKQ 281 + S + L+K+ Sbjct: 324 GKQAEESANNVLLRLLKR 341 >gi|320194291|gb|EFW68922.1| Head-tail preconnector protein GP5 [Escherichia coli WV_060327] Length = 501 Score = 92.4 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELVNASDAISVMA 290 >gi|323186751|gb|EFZ72073.1| head-tail preconnector protein GP5 [Escherichia coli RN587/1] Length = 501 Score = 92.4 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + + K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELVNASDAISVMA 290 >gi|294141564|ref|YP_003557542.1| sohB protein, peptidase U7 family [Shewanella violacea DSS12] gi|293328033|dbj|BAJ02764.1| sohB protein, peptidase U7 family [Shewanella violacea DSS12] Length = 343 Score = 92.4 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 103/239 (43%), Gaps = 10/239 (4%) Query: 35 SPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 P V + +G I+ S+ L E I I + +IV++ S GG + + Sbjct: 95 DPRVFVVDFKGSIDASEVASLREEISAILAIAEKGDEVIVTVESGGGMVHGYGLASSQLD 154 Query: 92 KV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ + + V ++AAS GY+++C +N + AA ++VGSIGV+ Q P L K + Sbjct: 155 RLRQADIHLTICVDKVAASGGYMMACVANKVYAAPFAIVGSIGVVAQIPNFHKLLKKHDI 214 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 + + K + F E + Q ++ ++ F + +++ R P ++ G Sbjct: 215 DYEQHTAGDFKRTLTLFGENTDEGRAKFQTELEETHVLFKQFIAKYR--PELDLDKVATG 272 Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 W G +A ++GLID + ++V L + KN+ S+S Sbjct: 273 EHWYGQQAIELGLIDGISTSDDVVMKLAKERTVIK----VRYQLKKNFADKIAHGASLS 327 >gi|200390897|ref|ZP_03217508.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603342|gb|EDZ01888.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 498 Score = 92.4 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 86/217 (39%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + + R+++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHKLGGMRPFSGMTGYDGITARLQQAVSDPEVKGILLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV +E A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRMREQKPVWALANETACSAAMLLAAACSHRLVTQTSRMGSIGVVMAHTSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + G+ I + S KA+ +P ++ Q +D + F V+ + D Sbjct: 196 EKLKQEGIDITLIYSGAHKADLTPSQKLPESVHADYQQRMDEARKMFAVKVARYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + ++ ++ G GL D + + + Sbjct: 256 AVMA-TEAAVYDGQAIITTGLADGMVNAADAIGVMAE 291 >gi|315634187|ref|ZP_07889476.1| protease SohB [Aggregatibacter segnis ATCC 33393] gi|315477437|gb|EFU68180.1| protease SohB [Aggregatibacter segnis ATCC 33393] Length = 352 Score = 92.4 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 113/264 (42%), Gaps = 17/264 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80 + P + + +G I S+ E+ ++ +D +++ L SPGG Sbjct: 95 GEDTESERKPSLYVLHFKGDISASETAALREEISAIVQVAKPNDE---VLLCLESPGGVV 151 Query: 81 YAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + + ++K +T V ++AAS GY+++C ++ IV+A +++GSIGV+ Q P Sbjct: 152 HGYGLAASQLMRLKQHNIKLTVAVDKVAASGGYMMACVADKIVSAPFAIIGSIGVVAQIP 211 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + L K V + + + K + E K Q Q ++ ++ F + VS++R Sbjct: 212 NIHRLLKKHDVDVDVMTAGEYKRTVTMLGENTEKGKQKFQQELEETHQLFKQFVSQNR-- 269 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 P+ ++ G W G +A + L+D + +++ ++ + K Sbjct: 270 PHLDVEQVATGEHWFGQQALNLNLVDEIMTSDDLLLQAMKEKQLIGVKYVV-----KKSL 324 Query: 260 FCDLKNLSISSLLEDTIPLMKQTK 283 + + S+ + +K+ + Sbjct: 325 LQKVGKQAEESVDNIALRWLKKNE 348 >gi|119872893|ref|YP_930900.1| peptidase S49 [Pyrobaculum islandicum DSM 4184] gi|119674301|gb|ABL88557.1| peptidase S49 [Pyrobaculum islandicum DSM 4184] Length = 550 Score = 92.0 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 51/278 (18%), Positives = 106/278 (38%), Gaps = 28/278 (10%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVEDN---SPHVARIAIRGQIED--SQELIERIERISRD 63 + + + L V++ P + +++ I + +L++ + +S+ Sbjct: 10 IALALAIGVAALFAVFYICQPKPAAPQPVKPKIVLVSVDFVIGGPETDKLVKALTELSQR 69 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 D +++ ++SPGG+ E ++ + + K + + AS Y + A+ I A Sbjct: 70 DDVAGIVLVINSPGGTVSGTETLYTTLLGLNKTKYAVIVG--LGASGAYYTAVAAERIYA 127 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 A +S VGSIGV+ L + + P+K + D V+ Sbjct: 128 APSSWVGSIGVVAVIWPD---LYLYDAADYIYTTGPLKYYGE--------DLHGYYDDVE 176 Query: 184 SSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 FV V R L ++T EA K+GL+D +GG + + + Sbjct: 177 KIRQNFVEAVLRGRAGRIKADPAVLETAGLFTAEEALKLGLVDKIGGVLDAARDMAEELG 236 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 ++ + + DL N++ ++ +PL + Sbjct: 237 LRNYSLV---------YLGDLMNMTAAAASAWRVPLSQ 265 >gi|156358147|ref|XP_001624386.1| predicted protein [Nematostella vectensis] gi|156211161|gb|EDO32286.1| predicted protein [Nematostella vectensis] Length = 445 Score = 92.0 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 58/267 (21%), Positives = 109/267 (40%), Gaps = 21/267 (7%) Query: 35 SPHVARIAIRGQIEDSQE---------LIERIERISRDDSA--TALIVSLSSPGGSAYAG 83 V I ++G I S + + I+R A+ + ++S GGS Sbjct: 178 KNVVRIIRLQGIINASSSNHRALSLRRVEKAIDRAFEVKKVAPKAVCLEINSTGGSPVQS 237 Query: 84 EAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 I+ I++ N K PV++ V + A S GY +S A + I S VGSIG + V Sbjct: 238 NLIYTRIREQANDKKIPVLSFVEDHALSGGYWLSLAGDEIFVDPNSAVGSIGAVSSNVGV 297 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + KLG+ + V K +P + P+ V+ ++ ++ ++ F+ LV E R Sbjct: 298 VEAMKKLGLEYRPVVMGEHKVRMNPMEPLKPEDVEWVKKILAEVHNNFIDLVKERRTKLD 357 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN--PPKNYW 259 + + G I+ G EA ++GL+D + L +L + + P++++ Sbjct: 358 TTSKTVFSGDIFLGKEAVRIGLVDAITT------DLKSLCKKRFGEDVVFERCDLPQDFF 411 Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQG 286 + + + ++G Sbjct: 412 TRMMNKRFGMEASINVDEALDSLAIRG 438 >gi|331666075|ref|ZP_08366969.1| head-tail preconnector protein GP5 [Escherichia coli TA143] gi|331057126|gb|EGI29120.1| head-tail preconnector protein GP5 [Escherichia coli TA143] Length = 501 Score = 92.0 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 87/212 (41%), Gaps = 14/212 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 ++ ++ G + GL D + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAI 286 >gi|300918442|ref|ZP_07135040.1| putative signal peptide peptidase SppA [Escherichia coli MS 115-1] gi|300414417|gb|EFJ97727.1| putative signal peptide peptidase SppA [Escherichia coli MS 115-1] Length = 445 Score = 92.0 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 90/217 (41%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ D +++ + +PGG Sbjct: 82 NGIAVLPVSGTLVSKTRSLQPYSGMTGYNGIIARLQQAISDPGVDGILLDMDTPGGMVAG 141 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I ++++ KP+ ++M SAG LI+ A++ + +T+ GSIGV+ + Sbjct: 142 AFDCADIIARMRDIKPIWALANDMNCSAGQLIASAASRRLVTQTARTGSIGVMMAHSNYG 201 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L GV + + S K + +P+ ++ + Q +D++ F V+ + Sbjct: 202 AALKTSGVEVTLIYSGDHKVDGNPYEKLPKEVRADFQARIDATRQMFAEKVAGYTGMSVQ 261 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 L ++ +++G E+ GL + + + + Sbjct: 262 AVLD-TEAAVFSGQESVDNGLAEQLVNNMDALNVMRD 297 >gi|267993060|gb|ACY87945.1| prophage head-tail preconnector [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|267994733|gb|ACY89618.1| head-tail preconnector-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] Length = 498 Score = 92.0 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 86/217 (39%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + + R+++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHKLGGMRPFSGMTGYDGITARLQQAVSDPEVKGILLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV +E A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMICRMREQKPVWALANETACSAAMLLAAACSHRLVTQTSRMGSIGVVMAHTSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + G+ I + S KA+ +P ++ Q +D + F V+ + D Sbjct: 196 EKLKQEGIDITLIYSGAHKADLTPSQKLPESVHADYQQRMDEARKMFAEKVARYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + ++ ++ G GL D + + + Sbjct: 256 AVMA-TEAAVYDGQAIITTGLADGMVNAADAIGVMAE 291 >gi|146293490|ref|YP_001183914.1| putative periplasmic protease [Shewanella putrefaciens CN-32] gi|145565180|gb|ABP76115.1| Peptidase S49, N-terminal domain protein [Shewanella putrefaciens CN-32] gi|319426794|gb|ADV54868.1| Peptidase S49 domain protein [Shewanella putrefaciens 200] Length = 338 Score = 92.0 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 106/246 (43%), Gaps = 10/246 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGE 84 + + + V I +G I+ ++ L E I I + ++V++ S GG + Sbjct: 84 KTEGDTSKGKVFVIDFKGSIDAAEVASLREEISAILAIAEKGDEVVVNVESGGGMVHGYG 143 Query: 85 AIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + ++ + + V ++AAS GY+++C +N I AA ++VGSIGV+ Q P Sbjct: 144 LASSQLDRLRQADILLTVCVDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQLPNFNR 203 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K + + + K + F E + Q Q+ ++ ++ F VS+ R P Sbjct: 204 LLKKHEIDYEQHTAGDFKRTLTVFGENTDEGRQKFQEELEETHVLFKAFVSKYR--PELN 261 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A ++GL+D + ++V SL + + K Sbjct: 262 LEKVATGEHWYGQQAIELGLVDEILTSDDVVMSLAKDRKVYKL----RYQVKKKLADKIA 317 Query: 264 KNLSIS 269 S+S Sbjct: 318 HGASLS 323 >gi|193070040|ref|ZP_03050987.1| head-tail preconnector protein GP5 [Escherichia coli E110019] gi|192956637|gb|EDV87093.1| head-tail preconnector protein GP5 [Escherichia coli E110019] Length = 501 Score = 92.0 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELVNASDAISVMA 290 >gi|193062745|ref|ZP_03043839.1| head-tail preconnector protein GP5 [Escherichia coli E22] gi|192931867|gb|EDV84467.1| head-tail preconnector protein GP5 [Escherichia coli E22] Length = 538 Score = 92.0 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 89/227 (39%), Gaps = 14/227 (6%) Query: 35 SPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 +A + + G + L R++ D +++ + SPGG A Sbjct: 75 KNGIAILPVSGTLVHKLGTLRPYSGMTGYDGLTARLQMAVNDPDVRGILLDIDSPGGQAA 134 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 I +++ +KPV ++MA SA L++ A + +T+ +GSIGV+ + Sbjct: 135 GAFDCADMIYRLREQKPVWALCNDMACSAAMLLAAACTRRLVTQTAKIGSIGVMMAHTSY 194 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + L + GV I + S K + + + Q +D + FV V+ + Sbjct: 195 EKQLAQEGVDITLIYSGQHKVDGNSIQALPAGVRADFQRRIDEARRMFVDKVALYTGLSS 254 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + + ++ ++ G GL D + + + + + D ++ Sbjct: 255 EAVMN-TEAAVYDGQAGIDAGLADQLINAADAVEVMVSALNDSVTKE 300 >gi|312968745|ref|ZP_07782953.1| putative head-tail preconnector protein [Escherichia coli 2362-75] gi|312286598|gb|EFR14510.1| putative head-tail preconnector protein [Escherichia coli 2362-75] Length = 501 Score = 92.0 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 86/216 (39%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSI V+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIDVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIDAGLADELVNASDAISVMA 290 >gi|52425201|ref|YP_088338.1| putative periplasmic protease [Mannheimia succiniciproducens MBEL55E] gi|52307253|gb|AAU37753.1| SppA protein [Mannheimia succiniciproducens MBEL55E] Length = 353 Score = 92.0 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 58/260 (22%), Positives = 110/260 (42%), Gaps = 12/260 (4%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERISR--DDSATALIVSLSSPGGSAYA 82 E P V + +G I S+ L E I I + + +++ L SPGG + Sbjct: 95 GEKTEESLKPCVYVMDFKGDIRASETAALREEISAILNVANPATDEVLLRLESPGGVVHG 154 Query: 83 GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++K + +T V ++AAS GY+++C ++ IVAA +++GSIGV+ Q P + Sbjct: 155 YGLAASQLARLKQKGIKLTVAVDKVAASGGYMMACVADKIVAAPFAVIGSIGVVAQVPNI 214 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K V + + + K + E K Q Q ++ ++ F + V+ +R P Sbjct: 215 HRLLKKHDVDVDVMTAGEYKRTVTFVGENTEKGKQKFQQELEETHDLFKQFVTANR--PL 272 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +A + L+D + +++ ++ K Sbjct: 273 VDIDKIATGEHWFGQQALALNLVDEIATSDDLILDAMQDKSVIGVKYAV-----KKSLIQ 327 Query: 262 DLKNLSISSLLEDTIPLMKQ 281 L + S + + +KQ Sbjct: 328 KLGKQAEESSDKLLLKWLKQ 347 >gi|240850472|ref|YP_002971870.1| phage protein Gp18 [Bartonella grahamii as4aup] gi|240267595|gb|ACS51183.1| phage protein Gp18 [Bartonella grahamii as4aup] Length = 351 Score = 92.0 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 86/220 (39%), Gaps = 16/220 (7%) Query: 35 SPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 ++A I + G + + L A+++ + S GG A Sbjct: 59 QNNIAIIPVHGTLVRRGAWLGALSGLTSYEGLGASFREAIAQPDVRAVLLDIDSGGGEAG 118 Query: 82 AGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + Q + + KP+ +E A SA Y I+C+++ I A T +VGSIGV+ + Sbjct: 119 GVFDLVEEFQALSKKYDKPIWAHANEFACSAAYAIACSASQIWVARTGVVGSIGVVCAHL 178 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 +K G V K +P ++ A MQ Y FV LV+++R + Sbjct: 179 DQSRADEKHGHKWTFVFEGDHKVHGNPHEPLSDTAQIKMQADCALLYEMFVDLVAQNRRL 238 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 D + G++A +GL D G + ++L Sbjct: 239 NADAIRDTK-AETFIGSQAITLGLADAQGTLAQALEALTD 277 >gi|168264539|ref|ZP_02686512.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205347014|gb|EDZ33645.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 498 Score = 92.0 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 86/217 (39%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + + R+++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHKLGGMRPFSGMTGYDGVTARLQQAVSDPEVKGILLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV +E A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRMREQKPVWALANETACSAAMLLAAACSHRLVTQTSRMGSIGVVMAHTSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + G+ I + S KA+ +P ++ Q +D + F V+ + D Sbjct: 196 EKLKQEGIDITLIYSGAHKADLTPSQKLPESVHADYQQRMDEARKMFAEKVARYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + ++ ++ G GL D + + + Sbjct: 256 AVMA-TEAAVYDGQAIITTGLADGMVNAADAIGVMAE 291 >gi|226940574|ref|YP_002795648.1| Periplasmic serine proteases (ClpP class) [Laribacter hongkongensis HLHK9] gi|226715501|gb|ACO74639.1| Periplasmic serine proteases (ClpP class) [Laribacter hongkongensis HLHK9] Length = 421 Score = 92.0 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 14/224 (6%) Query: 32 EDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGG 78 + S VA I + G + + + RD A+++ + SPGG Sbjct: 68 QLTSAGVAVIPVMGPLMQRGSWLDAMCGMTSYDRVNALVSAAMRDQDVRAVLLEIDSPGG 127 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A+ ++ KPV +E A SA Y I+ + + + T++VGSIGV+ + Sbjct: 128 EVAGLFALCDRLKAAATSKPVWAYANEAACSAAYAIASSVDRLYLPRTAMVGSIGVIAMH 187 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 G + V + KA+ + + ++ +A +Q +D Y FV V+ R Sbjct: 188 VDQSARDATQGYTYTPVFAGDKKADGNSHAPLSDRARTTLQTEIDRLYSMFVDHVATGRR 247 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + + G A D + +EV L Sbjct: 248 LEKQAVIDTQAGL-LNADAAVAGQFADGIASFDEVLAQLADTAK 290 >gi|76802382|ref|YP_327390.1| signal peptide peptidase [Natronomonas pharaonis DSM 2160] gi|76558247|emb|CAI49835.1| probable signal peptide peptidase [Natronomonas pharaonis DSM 2160] Length = 315 Score = 92.0 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 89/239 (37%), Gaps = 21/239 (8%) Query: 10 TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSAT 67 V+L++ + S V D+ V I ++G IE +Q++ +++ +DD+ Sbjct: 16 ALVVLLAIAAGVLAAPQVYSFVADDGDTVVVIEMQGPIETNMAQDVEDQLRDARQDDAVE 75 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 A+++ + S GG E I+ A+ + PVI V M AS YL ++ I A ++ Sbjct: 76 AVVLEVESGGGLPAQSERIYAAVDRTSEEMPVIATVDTMGASGAYLSMAPADEIYVAPSA 135 Query: 128 L-VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 VGS+GV P + P K + + Q + + Sbjct: 136 QAVGSVGVAGTAPSPSGPNAG--------TTGPDKR-----GPSTEQQREQQQILANLFV 182 Query: 187 HWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 V E R + ++ + G EA G D G ++ + + Sbjct: 183 ES----VIEQRGDEIELDREEIAHANSYLGTEAVNNGYADDFGFVDDAIEDAADEAGLR 237 >gi|26990583|ref|NP_746008.1| phage minor capsid protein C, putative [Pseudomonas putida KT2440] gi|24985565|gb|AAN69472.1|AE016582_10 phage minor capsid protein C, putative [Pseudomonas putida KT2440] Length = 323 Score = 92.0 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 14/213 (6%) Query: 38 VARIAIRG-------------QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 V I + G + + L + + D +++ + SPGGSA Sbjct: 79 VEVIPVHGVLVSRGSHLNACETMTSYEGLRAALNKAITDPMVEHIVLDIDSPGGSAVGAF 138 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + I+ KP+ V+ MA S GYLI+ A +V + TS VGSIGV+ + Sbjct: 139 ELAADIRAATKIKPITGLVNFMAYSGGYLIASACTEVVVSLTSGVGSIGVVASHMDRSKM 198 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 ++ +GV + +V + K + SP + +++Q++ +VV SY F V+E R Sbjct: 199 IEGMGVKVTTVFAGAHKNDLSPNEPITEQSLQVLNEVVQESYQLFTTHVAEYRGRDVADI 258 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 + ++ + G+ A +GL D + + +L Sbjct: 259 IA-TEAACYRGSSAIAIGLADRLESPQLAVDNL 290 >gi|62179788|ref|YP_216205.1| Gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127421|gb|AAX65124.1| Gifsy-1 prophage head-tail preconnector gp5 [Phage Gifsy-1] gi|322714256|gb|EFZ05827.1| Gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 498 Score = 92.0 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 86/217 (39%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + + R+++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHKLGGMRPFSGMTGYDGVTARLQQAVSDPEVKGILLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV +E A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRMREQKPVWALANETACSAAMLLAAACSHRLVTQTSRMGSIGVVMAHTSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + G+ I + S KA+ +P ++ Q +D + F V+ + D Sbjct: 196 EKLKQEGIDITLIYSGAHKADLTPSQKLPESVYADYQQRMDEARKMFAEKVARYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + ++ ++ G GL D + + + Sbjct: 256 AVMA-TEAAVYDGQAIITTGLADGMVNAADAIGVMAE 291 >gi|330444147|ref|YP_004377133.1| proteinase IV [Chlamydophila pecorum E58] gi|328807257|gb|AEB41430.1| proteinase IV [Chlamydophila pecorum E58] Length = 303 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 58/260 (22%), Positives = 112/260 (43%), Gaps = 15/260 (5%) Query: 30 HVEDNSPHVARIAIRGQIEDSQELIERIERI--------SRDDSATALIVSLSSPGGSAY 81 + +P + + I+ I ++ + +E +D +I+ ++ PGG + Sbjct: 30 ELGKTAPIIVVLDIKDSITSAKSSAKSLEEALLALEKEPFKD-RVKGVILDMNCPGGEVF 88 Query: 82 AGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQY 138 I+ + K + P+ V+ + AS GY I+C ++ I + SL+GS+GVL Y Sbjct: 89 EVSRIYATLNFWKQKSSLPLYVFVNGLCASGGYYIACTADKIYTSPASLIGSVGVLSGPY 148 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 VK L++ G+ + + KA +P++ +A + Q V+D Y FV +V+ R Sbjct: 149 FNVKEGLNRHGIESDVLTAGEEKAPLNPYTPWTAQARKERQGVIDFLYGQFVDVVASHRP 208 Query: 199 -IPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 + DK RI+ +A + G +DV+ ++ V Q L + ++ Sbjct: 209 LLTKDKLERTLGARIFPPQQALEEGFVDVINVTKQHVLQELVTACGIEESYRVVGIEG-G 267 Query: 257 NYWFCDLKNLSISSLLEDTI 276 W + S L+ + Sbjct: 268 GLWKKIATAAASSPLITGKL 287 >gi|281178282|dbj|BAI54612.1| putative phage capsid assembly protein [Escherichia coli SE15] Length = 501 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|323185713|gb|EFZ71074.1| head-tail preconnector protein GP5 [Escherichia coli 1357] Length = 538 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 86/222 (38%), Gaps = 14/222 (6%) Query: 35 SPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 +A + + G + L R++ D +++ + SPGG A Sbjct: 75 KNGIAILPVSGTLVHKMGTLRPYSGMTGYDGLTARLKSAVNDPDVRGILLDIDSPGGQAA 134 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 I +++ +KPV ++MA SA L++ A + +T+ +GSIGV+ + Sbjct: 135 GAFDCADMIYRLREQKPVWALCNDMACSAAMLLAAACTRRLVTQTAKIGSIGVMMAHTSY 194 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + L + GV I + S K + + + Q +D + FV V+ + Sbjct: 195 EKQLAQEGVDITLIYSGQHKVDGNSIQALPTGVRADFQRRIDEARRMFVDKVALYTGLSS 254 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 + + ++ ++ G GL D + + + + D Sbjct: 255 EAVMN-TEATVYDGQAGIDTGLADQLINAADAVDVMVSALND 295 >gi|218557481|ref|YP_002390394.1| head-tail preconnector protein GP5 [Escherichia coli S88] gi|300825250|ref|ZP_07105336.1| putative signal peptide peptidase SppA [Escherichia coli MS 119-7] gi|218364250|emb|CAR01919.1| Head-tail preconnector protein GP5 [Contains: Scaffold protein GP6 (Head protein GP6)] [Escherichia coli S88] gi|300522269|gb|EFK43338.1| putative signal peptide peptidase SppA [Escherichia coli MS 119-7] Length = 501 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|299769230|ref|YP_003731256.1| putative periplasmic protease [Acinetobacter sp. DR1] gi|298699318|gb|ADI89883.1| putative periplasmic protease [Acinetobacter sp. DR1] Length = 320 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 109/260 (41%), Gaps = 13/260 (5%) Query: 33 DNSPHVARIAIRGQIEDS--QELIERIERISRDDSA--TALIVSLSSPGGSAYAGEAIFR 88 N+ + + +G I+ S + + E I I A ++V L SPGG + Sbjct: 54 KNNQKIFVLDFKGDIQASAVENIREEITLILATAKAGRDRVVVRLESPGGMVHGYGLAAA 113 Query: 89 AIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + ++++ + V ++AAS GY+++C +N I+AA ++VGSIGV+ Q P L + Sbjct: 114 QLVRLRDAGFHLTICVDKVAASGGYMMACIANEIIAAPFAIVGSIGVVAQVPNFNRLLKQ 173 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 V + + K + F E P+ ++ + ++ F V + R P + Sbjct: 174 HNVDFELYTAGQYKRTVTMFGENTPEGKAKFEEELQQTHVLFKHFVEKYR--PQLNVDKV 231 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G W G +A ++ L+D + +E +L + N K + L Sbjct: 232 ATGEHWYGEDALELNLVDKLQTSDEYLLALL------PQHDVYVINTRKKATLGEKLGLQ 285 Query: 268 ISSLLEDTIPLMKQTKVQGL 287 + + + IP + L Sbjct: 286 AAQMADSLIPAVMNKVADTL 305 >gi|260844392|ref|YP_003222170.1| putative head protein/prohead protease [Escherichia coli O103:H2 str. 12009] gi|260844530|ref|YP_003222308.1| putative head protein/prohead protease [Escherichia coli O103:H2 str. 12009] gi|257759539|dbj|BAI31036.1| putative head protein/prohead protease [Escherichia coli O103:H2 str. 12009] gi|257759677|dbj|BAI31174.1| putative head protein/prohead protease [Escherichia coli O103:H2 str. 12009] Length = 501 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIDAGLADELVNASDAISVMA 290 >gi|293414565|ref|ZP_06657214.1| phage capsid assembly protein [Escherichia coli B185] gi|291434623|gb|EFF07596.1| phage capsid assembly protein [Escherichia coli B185] Length = 538 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 89/227 (39%), Gaps = 14/227 (6%) Query: 35 SPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 +A + + G + L R++ D +++ + SPGG A Sbjct: 75 KNGIAILPVSGTLVHKLGTLRPYSGMTGYDGLTARLQMAVNDPDVRGILLDIDSPGGQAA 134 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 I +++ +KPV ++MA SA L++ A + +T+ +GSIGV+ + Sbjct: 135 GAFDCADMIYRLREQKPVWALCNDMACSAAMLLAAACTRRLVTQTAKIGSIGVMMAHTSY 194 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + L + GV I + S K + + + Q +D + FV V+ + Sbjct: 195 EKQLAQEGVDITLIYSGQHKVDGNSIQALPAGVRADFQRRIDEARRMFVDKVALYTGLSS 254 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + + ++ ++ G GL D + + + + + D ++ Sbjct: 255 EAVMN-TEAAVYDGQAGIDAGLADQLINAADAVEVMVSALNDSVTKE 300 >gi|91210523|ref|YP_540509.1| putative prophage capsid assembly protein [Escherichia coli UTI89] gi|187732704|ref|YP_001880064.1| head-tail preconnector protein GP5 [Shigella boydii CDC 3083-94] gi|91072097|gb|ABE06978.1| putative capsid assembly protein of prophage [Escherichia coli UTI89] gi|187429696|gb|ACD08970.1| head-tail preconnector protein GP5 [Shigella boydii CDC 3083-94] gi|294489477|gb|ADE88233.1| head-tail preconnector protein [Escherichia coli IHE3034] gi|307627191|gb|ADN71495.1| Head-tail preconnector protein GP5 (Contains: Scaffold protein GP6 (Head protein GP6)) [Escherichia coli UM146] Length = 501 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|261253391|ref|ZP_05945964.1| SohB protein peptidase U7 family [Vibrio orientalis CIP 102891] gi|260936782|gb|EEX92771.1| SohB protein peptidase U7 family [Vibrio orientalis CIP 102891] Length = 349 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 110/261 (42%), Gaps = 14/261 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 PH+ + +G I+ +E+ + D +++ L S GG + Sbjct: 93 GDLDSKREPHLFVLDFKGSIDAKEVASLREEVTAILAVAREGDE---VLLRLESGGGMVH 149 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + ++K K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 150 GYGLASSQLDRLKAAKLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIAQLPN 209 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E KA + + ++ ++ F + E R P Sbjct: 210 FNKVLKKYDIEYEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHGLFKDFIRERR--P 267 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 + ++ G W G +A ++GL+D + +++ +I ++ Sbjct: 268 ALELEKVATGEHWFGTQAHELGLVDEIKTSDDLVVEACKDKTVLAIHYVE--KKKLTSKL 325 Query: 261 CDLKNLSISSLLEDTIPLMKQ 281 L + ++L I ++ Sbjct: 326 AGLAGEAADNVLMKLIDRGQR 346 >gi|301159156|emb|CBW18670.1| putative bacteriophage tail protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] Length = 482 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 86/217 (39%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + + R+++ D +++ + SPGG A Sbjct: 60 NGIAVLPVTGTLVHKLGGMRPFSGMTGYDGVTARLQQAVSDPEVKGILLDIDSPGGQAAG 119 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV +E A SA L++ A + + +TS +GSIGV+ + Sbjct: 120 AFDCADMIYRMREQKPVWALANETACSAAMLLAAACSHRLVTQTSRMGSIGVVMAHTSYA 179 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + G+ I + S KA+ +P ++ Q +D + F V+ + D Sbjct: 180 EKLKQEGIDITLIYSGAHKADLTPSQKLPESVYADYQQRMDEARKMFAEKVARYTGLSVD 239 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + ++ ++ G GL D + + + Sbjct: 240 AVMA-TEAAVYDGQAIITTGLADGMVNAADAIGVMAE 275 >gi|15801571|ref|NP_287588.1| putative head-tail preconnector protein of prophage CP-933O [Escherichia coli O157:H7 EDL933] gi|12515088|gb|AAG56200.1|AE005349_4 putative head-tail preconnector protein of prophage CP-933O [Escherichia coli O157:H7 str. EDL933] Length = 501 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQNMQQRIDAARRMFAEKVAMFTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIDAGLADELVNASDAISVMA 290 >gi|16765926|ref|NP_461541.1| head-tail preconnector-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992742|ref|ZP_02573838.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168466629|ref|ZP_02700483.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168467948|ref|ZP_02701785.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168468075|ref|ZP_02701912.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822377|ref|ZP_02834377.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|169257232|ref|YP_001700609.1| bacteriophage prohead protease; Lambda gpC homolog [Phage Gifsy-1] gi|194445600|ref|YP_002041869.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|16421154|gb|AAL21500.1| Gifsy-1 prophage protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194404263|gb|ACF64485.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195628838|gb|EDX48256.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195628990|gb|EDX48386.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195630840|gb|EDX49432.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205329131|gb|EDZ15895.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205341279|gb|EDZ28043.1| gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|261247803|emb|CBG25631.1| capsid assembly protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|312913598|dbj|BAJ37572.1| Gifsy-1 prophage head-tail preconnector gp5 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085509|emb|CBY95288.1| Head-tail preconnector protein GP5 Contains: Scaffold protein GP6; Head protein GP6 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222685|gb|EFX47756.1| head-tail preconnector-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130940|gb|ADX18370.1| head-tail preconnector-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989534|gb|AEF08517.1| head-tail preconnector-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 498 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 86/217 (39%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + + R+++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHKLGGMRPFSGMTGYDGVTARLQQAVSDPEVKGILLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV +E A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRMREQKPVWALANETACSAAMLLAAACSHRLVTQTSRMGSIGVVMAHTSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + G+ I + S KA+ +P ++ Q +D + F V+ + D Sbjct: 196 EKLKQEGIDITLIYSGAHKADLTPSQKLPESVYADYQQRMDEARKMFAEKVARYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + ++ ++ G GL D + + + Sbjct: 256 AVMA-TEAAVYDGQAIITTGLADGMVNAADAIGVMAE 291 >gi|15801775|ref|NP_287793.1| putative capsid assembly protein of prophage CP-933R [Escherichia coli O157:H7 EDL933] gi|15830362|ref|NP_309135.1| head-tail preconnector protein [Escherichia coli O157:H7 str. Sakai] gi|15831986|ref|NP_310759.1| head-tail preconnector protein [Escherichia coli O157:H7 str. Sakai] gi|168751220|ref|ZP_02776242.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4113] gi|168754268|ref|ZP_02779275.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4401] gi|168757627|ref|ZP_02782634.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4401] gi|168763183|ref|ZP_02788190.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4501] gi|168763888|ref|ZP_02788895.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4501] gi|168767447|ref|ZP_02792454.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4486] gi|168770248|ref|ZP_02795255.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4486] gi|168777049|ref|ZP_02802056.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4196] gi|168777492|ref|ZP_02802499.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4196] gi|168778046|ref|ZP_02803053.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4196] gi|168780966|ref|ZP_02805973.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4076] gi|168783394|ref|ZP_02808401.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4076] gi|168784264|ref|ZP_02809271.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4076] gi|168787454|ref|ZP_02812461.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC869] gi|168789357|ref|ZP_02814364.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC869] gi|168801276|ref|ZP_02826283.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC508] gi|168802152|ref|ZP_02827159.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC508] gi|195935207|ref|ZP_03080589.1| putative head-tail preconnector protein [Escherichia coli O157:H7 str. EC4024] gi|195939765|ref|ZP_03085147.1| putative head-tail preconnector protein [Escherichia coli O157:H7 str. EC4024] gi|208806693|ref|ZP_03249030.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4206] gi|208810278|ref|ZP_03252154.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4206] gi|208811228|ref|ZP_03253038.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4206] gi|208815162|ref|ZP_03256341.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4045] gi|208817055|ref|ZP_03258175.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4045] gi|208820900|ref|ZP_03261220.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4042] gi|208822761|ref|ZP_03263080.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4042] gi|209395709|ref|YP_002271108.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4115] gi|209398436|ref|YP_002269682.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4115] gi|217325919|ref|ZP_03442003.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. TW14588] gi|217329576|ref|ZP_03445655.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. TW14588] gi|254792211|ref|YP_003077048.1| capsid assembly protein [Escherichia coli O157:H7 str. TW14359] gi|254793644|ref|YP_003078481.1| putative capsid assembly protein of prophage CP-933R [Escherichia coli O157:H7 str. TW14359] gi|261225748|ref|ZP_05940029.1| Head-tail preconnector protein GP5 (Contains: Scaffold protein GP6 (Head protein GP6)) [Escherichia coli O157:H7 str. FRIK2000] gi|261257965|ref|ZP_05950498.1| Head-tail preconnector protein GP5 (Contains: Scaffold protein GP6 (Head protein GP6)) [Escherichia coli O157:H7 str. FRIK966] gi|12515353|gb|AAG56407.1|AE005368_13 putative capsid assembly protein of prophage CP-933R [Escherichia coli O157:H7 str. EDL933] gi|13360568|dbj|BAB34531.1| putative head-tail preconnector protein [Escherichia coli O157:H7 str. Sakai] gi|13362200|dbj|BAB36155.1| putative head-tail preconnector protein [Escherichia coli O157:H7 str. Sakai] gi|187766864|gb|EDU30708.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4196] gi|187767278|gb|EDU31122.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4196] gi|187767637|gb|EDU31481.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4196] gi|188014675|gb|EDU52797.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4113] gi|188998532|gb|EDU67522.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4076] gi|188999298|gb|EDU68284.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4076] gi|189001214|gb|EDU70200.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4076] gi|189355418|gb|EDU73837.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4401] gi|189358337|gb|EDU76756.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4401] gi|189360828|gb|EDU79247.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4486] gi|189363243|gb|EDU81662.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4486] gi|189366001|gb|EDU84417.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4501] gi|189366559|gb|EDU84975.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4501] gi|189371025|gb|EDU89441.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC869] gi|189372590|gb|EDU91006.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC869] gi|189375824|gb|EDU94240.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC508] gi|189376524|gb|EDU94940.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC508] gi|208724335|gb|EDZ74044.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4206] gi|208724794|gb|EDZ74501.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4206] gi|208726494|gb|EDZ76095.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4206] gi|208731398|gb|EDZ80087.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4045] gi|208731810|gb|EDZ80498.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4045] gi|208738246|gb|EDZ85929.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4042] gi|208741023|gb|EDZ88705.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4042] gi|209157109|gb|ACI34542.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4115] gi|209159836|gb|ACI37269.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC4115] gi|217317344|gb|EEC25773.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. TW14588] gi|217322140|gb|EEC30564.1| head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. TW14588] gi|254591611|gb|ACT70972.1| capsid assembly protein [Escherichia coli O157:H7 str. TW14359] gi|254593044|gb|ACT72405.1| putative capsid assembly protein of prophage CP-933R [Escherichia coli O157:H7 str. TW14359] gi|320192550|gb|EFW67192.1| Head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. EC1212] gi|326342702|gb|EGD66473.1| Head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. 1125] gi|326347754|gb|EGD71470.1| Head-tail preconnector protein GP5 [Escherichia coli O157:H7 str. 1044] Length = 501 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQNMQQRIDAARRMFAEKVAMFTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIDAGLADELVNASDAISVMA 290 >gi|55378760|ref|YP_136610.1| protease IV-like [Haloarcula marismortui ATCC 43049] gi|55231485|gb|AAV46904.1| protease IV-like [Haloarcula marismortui ATCC 43049] Length = 319 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 99/251 (39%), Gaps = 19/251 (7%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWS------SHVEDNSPHVARIAIRGQIEDSQ--ELIE 55 + + YV+ + + + D+ P VA I +RG D+ + + Sbjct: 7 LFSAMTASYVIAVTLAIVIAAIFAPVIWNGVPSGGDDDPSVAVITLRGGTTDANVNAVKQ 66 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 + ++S A+++ + SPGG + E + A+ + + PV+ V AAS GY Sbjct: 67 DLREARTNESIEAVVLRVDSPGGPVDSSEEFYLAVNRTASEMPVVAYVEGTAASGGYYGI 126 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 ++ IV +S VGSIGV+ Q P L + + + P + Sbjct: 127 TPADEIVVKPSSNVGSIGVIVQAP--------LSLIEQVEQQGETFVRSGPDKA--QISK 176 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 +++ ++ FV V R + +++G + GA+A + G D +G Sbjct: 177 DSLREDIEVLQRSFVGTVMRHRGEQLTVSREEVANGGTYLGAQATENGFADRIGDTGLAI 236 Query: 235 QSLYALGVDQS 245 + AL D Sbjct: 237 ERAAALSDDIE 247 >gi|121996911|ref|YP_001001698.1| putative periplasmic protease [Halorhodospira halophila SL1] gi|121588316|gb|ABM60896.1| inner membrane peptidase, Serine peptidase, MEROPS family S49 [Halorhodospira halophila SL1] Length = 335 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 50/262 (19%), Positives = 96/262 (36%), Gaps = 11/262 (4%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGS 79 S + E + + RG I +E+ I + +I+ L SPGG Sbjct: 78 SETPPAELPDKRIYVLEFRGDIRARAVEGLREEITAVI--AAARPGQDEVILRLESPGGG 135 Query: 80 AYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 A + +++ + V +AAS GYL++ + IVAA +L+GSIGV+ Sbjct: 136 VPAYGLAASQLARLREAGIHLTVCVDRVAASGGYLMAVVGDRIVAAPFALIGSIGVVGSL 195 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P +L + + + P K + F E + ++ + + F + R Sbjct: 196 PNFHRWLRNRDIDFEQHTAGPYKRTLTVFGENTEADRERFREDLGHIHEQFKGFLRRYR- 254 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P ++ G W A + GLID + ++ + + + + Sbjct: 255 -PQLDVETVATGEFWLAERALEAGLIDALQTSDDCIMAQREQAHLLEVDYRQREGWSQRL 313 Query: 259 WFCDLKNLSISSLLEDTIPLMK 280 + L S ++ P ++ Sbjct: 314 TQVTERLLGQRSGIDRLGPDLE 335 >gi|215485837|ref|YP_002328268.1| predicted head protein/prohead protease [Escherichia coli O127:H6 str. E2348/69] gi|215263909|emb|CAS08247.1| predicted head protein/prohead protease [Escherichia coli O127:H6 str. E2348/69] Length = 501 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIDAGLADELVNASDAISVMA 290 >gi|193066616|ref|ZP_03047653.1| head-tail preconnector protein GP5 [Escherichia coli E22] gi|192925744|gb|EDV80401.1| head-tail preconnector protein GP5 [Escherichia coli E22] Length = 501 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIDAGLADELVNASDAISVMA 290 >gi|284921116|emb|CBG34182.1| phage head-tail preconnector protein [contains: scaffold protein] [Escherichia coli 042] Length = 501 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|260842992|ref|YP_003220770.1| putative head protein/prohead protease [Escherichia coli O103:H2 str. 12009] gi|257758139|dbj|BAI29636.1| putative head protein/prohead protease [Escherichia coli O103:H2 str. 12009] Length = 501 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIDAGLADELVNASDAISVMA 290 >gi|6723229|dbj|BAA89626.1| orf7 [Wolbachia phage WO] Length = 353 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 104/239 (43%), Gaps = 14/239 (5%) Query: 31 VEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPG 77 V N A IAI G + +++ E IE + +++ + SPG Sbjct: 40 VNQNIEKTAVIAINGILTKKPGAFDDFLGMTSYEKIQEEIEEALSNKDIETILLDIDSPG 99 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G + I + + +K +I ++ A SA Y I+ ++ + + TS VGSIGV+ Sbjct: 100 GEVNGIFDLADFIYESRAKKRIIAIANDDAYSAAYAIASSAEKVFVSRTSGVGSIGVIAS 159 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + F +K G+ ++ + K + +P + ++++ +Q V Y F++L++ +R Sbjct: 160 HIDQSRFDEKQGIKYTTIFAGSRKNDLNPHEPMTSESLESLQKEVGRLYEMFLQLIARNR 219 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 + +K G + G +A ++GL D V E + + V + ++ D Sbjct: 220 GLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFINNHKSRSVSMTTNELPDEGYEN 277 >gi|207092958|ref|ZP_03240745.1| signal peptide protease IV [Helicobacter pylori HPKX_438_AG0C1] Length = 194 Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 88/177 (49%), Gaps = 4/177 (2%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 ++F+ K K+ L+ + +V+FS P++A++ + G I +++ + +++I Sbjct: 17 LDFITKYFKS----FMLLLIVLVFFSAKESTPSAPPNLAKLYLNGAIFSAEDFDKEVDKI 72 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + S +++ + SPGG+ A + I +K + PV+ + AS Y ++ Sbjct: 73 LKTPSIKGVLLLIDSPGGAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAGMQASE 132 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 + A++ SL+GSIGV+F V+ L+K+GV+ + V + K + P + Sbjct: 133 VYASKASLIGSIGVIFSGANVENLLNKVGVATQGVHAGEYKEIGTFTRAWKPNEKEF 189 >gi|163750235|ref|ZP_02157477.1| sohB protein, peptidase U7 family [Shewanella benthica KT99] gi|161330091|gb|EDQ01075.1| sohB protein, peptidase U7 family [Shewanella benthica KT99] Length = 335 Score = 91.2 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 111/259 (42%), Gaps = 18/259 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAG 83 + P V + +G I+ S+ E+ + DD +IV++ S GG + Sbjct: 82 DEQTLDPRVFVVDFKGSIDASEVASLREEISAILTIAETDDE---VIVNVESGGGMVHGY 138 Query: 84 EAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + +++ + V ++AAS GY+++C +N I AA ++VGSIGV+ Q P Sbjct: 139 GLASSQLDRLRQAGIHLTICVDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQIPNFN 198 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L K + + + K + F E + Q ++ ++ F + +++ R P Sbjct: 199 KLLKKHDIDYEQHTAGDFKRTLTLFGENTDEGRAKFQAELEDTHVLFKQFIAKYR--PEL 256 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 ++ G W G +A K+GL+D + ++V L ++++ K++ K F D Sbjct: 257 DLDKVATGEHWYGQQAIKLGLVDAISTSDDVV---MKLARERTVIKVRYQLKKK---FAD 310 Query: 263 LKNLSISSLLEDTIPLMKQ 281 IS + + Sbjct: 311 KIAHGISLSFNAIFNKLAE 329 >gi|291285789|ref|YP_003502607.1| Head-tail preconnector protein GP5 [Escherichia coli O55:H7 str. CB9615] gi|290765662|gb|ADD59623.1| Head-tail preconnector protein GP5 [Escherichia coli O55:H7 str. CB9615] Length = 501 Score = 91.2 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVSCLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|117919978|ref|YP_869170.1| putative periplasmic protease [Shewanella sp. ANA-3] gi|117612310|gb|ABK47764.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Shewanella sp. ANA-3] Length = 338 Score = 91.2 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 113/246 (45%), Gaps = 10/246 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGE 84 + ED+ V I +G I+ ++ L E I I + ++V++ S GG + Sbjct: 84 KTAEEDSKGKVFVIDFKGSIDAAEVASLREEISAILTIAEKGDEVVVNVESGGGMVHGYG 143 Query: 85 AIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + ++ + P+ V ++AAS GY+++C +N + AA ++VGSIGV+ Q P Sbjct: 144 LASSQLDRLRQAEIPLTICVDKVAASGGYMMACVANKVYAAPFAIVGSIGVVAQLPNFNR 203 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K + + + K + F E + Q Q ++ ++ F VS+ R P Sbjct: 204 LLKKHEIDYEQHTAGDFKRTLTVFGENTDEGRQKFQQELEETHVLFKAFVSKYR--PQLD 261 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A ++GLID + ++V L L ++++ K++ + K Sbjct: 262 LAKVATGEHWYGQQAIELGLIDAISTSDDV---LMQLAGERTVYKLR-YQVRKKLADKIA 317 Query: 264 KNLSIS 269 S+S Sbjct: 318 HGASLS 323 >gi|187733678|ref|YP_001879583.1| head-tail preconnector protein GP5 [Shigella boydii CDC 3083-94] gi|187430670|gb|ACD09944.1| head-tail preconnector protein GP5 [Shigella boydii CDC 3083-94] Length = 501 Score = 91.2 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 89/216 (41%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVTCLQQAMADSQVRGILLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TSL+GSIGV+ + Sbjct: 136 VFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSLIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|291282672|ref|YP_003499490.1| Periplasmic serine proteases (ClpP class) [Escherichia coli O55:H7 str. CB9615] gi|291283173|ref|YP_003499991.1| Periplasmic serine proteases (ClpP class) [Escherichia coli O55:H7 str. CB9615] gi|290762545|gb|ADD56506.1| Periplasmic serine proteases (ClpP class) [Escherichia coli O55:H7 str. CB9615] gi|290763046|gb|ADD57007.1| Periplasmic serine proteases (ClpP class) [Escherichia coli O55:H7 str. CB9615] Length = 501 Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGTHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIDAGLADELVNASDAISVMA 290 >gi|323499379|ref|ZP_08104355.1| putative inner membrane peptidase [Vibrio sinaloensis DSM 21326] gi|323315564|gb|EGA68599.1| putative inner membrane peptidase [Vibrio sinaloensis DSM 21326] Length = 353 Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 111/267 (41%), Gaps = 17/267 (6%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPG 77 PH+ + +G I+ +E+ + D +++ L S G Sbjct: 93 ASKAGDLDSKREPHLFVLDFKGSIDAKEVASLREEVTAILAVAREGDE---VLLRLESGG 149 Query: 78 GSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 G + + ++K K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Sbjct: 150 GMVHGYGLASSQLDRLKAAKLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIA 209 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 Q P L K + + + + K + F E KA + + ++ ++ F + E Sbjct: 210 QLPNFNKVLKKYDIEYEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHGLFKDFIRER 269 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R P + ++ G W G +A ++GL+D + +++ +I + K Sbjct: 270 R--PALELEKVATGEHWFGTQAHELGLVDEIKTSDDLVVEACKDKTVLAIHYV-----EK 322 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTK 283 L ++ + + L+ + + Sbjct: 323 KKLTSKLAGMAGEAADNVLMKLIDRGQ 349 >gi|323160792|gb|EFZ46724.1| minor capsid protein C [Escherichia coli E128010] Length = 354 Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYSGTHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIDAGLADELVNASDAISVMA 290 >gi|310767745|gb|ADP12695.1| putative periplasmic protease [Erwinia sp. Ejp617] Length = 349 Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 115/265 (43%), Gaps = 18/265 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 V P + I +G + + E+ + + D +++ L SPGG + Sbjct: 96 VSKGKPTLYVIDFKGSMGAGEVSSLREEVSAVMAVAEKGDE---VLLRLESPGGVVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T V ++AAS GY+++C ++ IVAA S++GSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVAVDKVAASGGYMMACVADRIVAAPFSIIGSIGVVAQIPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L + + ++ + K + F E + + ++ ++ ++ F + V + R P Sbjct: 213 LLKRNEIDVELHTAGEYKRTLTLFGENTEQGREKFREDLNETHQLFKQFVHQMR--PTLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D +G +++ A ++ + D Sbjct: 271 IDSVATGEHWYGQQALEKGLVDAIGTSDDLIIDHIAKH------QVIGVRYARRKGMMDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + LE + + Q + L Sbjct: 325 FTQSATLSLERLLLRIWQRGDKPLL 349 >gi|209918850|ref|YP_002292934.1| putative phage capsid assembly protein [Escherichia coli SE11] gi|209912109|dbj|BAG77183.1| putative phage capsid assembly protein [Escherichia coli SE11] Length = 499 Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 86/212 (40%), Gaps = 14/212 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D S +++ + SPGG A Sbjct: 76 NGIAILPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMVDPSVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV +EMA SA L++ A + +T+ +GSIGV+ + + Sbjct: 136 AFDCADMIYRLREKKPVWALCNEMACSAAMLLAAACTRRLVTQTAKIGSIGVMMAHTSYE 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + + Q +D + FV V+ + + Sbjct: 196 KQLAQEGVDITLIYSGKHKVDGNCIQALPAGVCADFQRRIDEARQMFVDKVALYTGMSSE 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 + ++ ++ G +GL D + + Sbjct: 256 AVMS-TEAAVYDGQAGIDIGLADELINASDAI 286 >gi|303326909|ref|ZP_07357351.1| minor capsid protein C, degenerate [Desulfovibrio sp. 3_1_syn3] gi|302862897|gb|EFL85829.1| minor capsid protein C, degenerate [Desulfovibrio sp. 3_1_syn3] Length = 441 Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 57/228 (25%), Positives = 102/228 (44%), Gaps = 17/228 (7%) Query: 37 HVARIAIRGQI---------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 +VA + +RG + ++ +E + D SATAL+++L SPGG+ Sbjct: 78 NVAVVRVRGPLDRETAVSGWTGKRLSTGYGDIRSAMETAAADPSATALLLALDSPGGAVG 137 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + + AI V RKPV + ASA Y ++ A+ + A T+ VGSIGV+ + Sbjct: 138 GCKELADAIAAVAARKPVAAYADGLCASAAYWLASATGRVFAPVTAQVGSIGVVMIHADF 197 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 +K+GVS + KA + + ++P++ +Q V++ + F V+ + + Sbjct: 198 SHLNEKMGVSYSYITGGEWKAVGNKNAPLSPESRAYLQQRVNALHSIFRADVARNMGLDP 257 Query: 202 DKTL-VLSDGRIWTGAEAKKVGLIDVVGG-QEEVWQSLYALGVDQSIR 247 DG+I+ EA+++GL+ + EE L Sbjct: 258 SADACAWGDGQIFLAQEAQRLGLVSAIVTGMEEAIHILAQETHMDKKT 305 >gi|318605616|emb|CBY27114.1| putative protease sohB [Yersinia enterocolitica subsp. palearctica Y11] Length = 348 Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 52/270 (19%), Positives = 119/270 (44%), Gaps = 18/270 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGS 79 + S V P + I +G I+ +E+ + + D +++ L SPGG Sbjct: 90 AKSGAVAAVKPCLYVIDFKGSIDAHEVASLREEISAVLAVATAQDE---VLLRLESPGGV 146 Query: 80 AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + +++++++ +T V ++AAS GY+++C ++ I++A +++GSIGV+ Q Sbjct: 147 VHGYGLAASQLERLRHKGIRLTVAVDKVAASGGYMMACVADRIISAPFAIIGSIGVVAQI 206 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P L K + ++ + K + F E + + ++ ++ ++ F + V + R Sbjct: 207 PNFHRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVHQQR- 265 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P ++ G W G +AK+ GL+D +G +++ + + ++ + Sbjct: 266 -PSLDIDAVATGEHWFGTQAKEKGLVDAIGTSDDLL--IAEM----DNHEVIGVRYSRRK 318 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S + ++ + Q + L Sbjct: 319 RLMDRFTGSAAETVDRLLLRWWQRGEKPLL 348 >gi|297621858|ref|YP_003709995.1| putative signal peptide peptidase sppA [Waddlia chondrophila WSU 86-1044] gi|297377159|gb|ADI38989.1| putative signal peptide peptidase sppA [Waddlia chondrophila WSU 86-1044] Length = 346 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 62/281 (22%), Positives = 120/281 (42%), Gaps = 18/281 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQ---ELIERIER-----ISRDDSATALIVSLSSPGGSAYA 82 DN+P + +++I G I + +I + + ++D A++V +SSPGG+ Sbjct: 66 ASDNAPVILKLSISGLIGTESLNMNTVSQILQESREGLFKNDRVKAVLVQISSPGGTVVD 125 Query: 83 GEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF-QYP 139 + I+RA+++ K P+ V + AS G I+ A + + A + SL+GS+GVL + Sbjct: 126 SDGIYRALKQYKKDYNVPIYGFVDGLCASGGMYIASACDKVYATDVSLIGSVGVLSPAFF 185 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-N 198 ++K+GV K + + K +P ++ ++DS Y+ FV +V E+R + Sbjct: 186 NFTELMEKVGVDAKVLSAGKGKDALNPLRPWKEGEADSLKAIIDSYYNQFVDIVVENRPD 245 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 I + ++ ++A+++G ID G EE + L + K Sbjct: 246 IKRTHLINDYGAHVYLASKAQELGYIDGSGFTYEETMKLLAKEMGIEDDYYQVVRMERKF 305 Query: 258 YWFCDLKNLSISSLLE-----DTIPLMKQTKVQGLWAVWNP 293 N ++ D P + ++ P Sbjct: 306 DLSDYFNNGTMLFNGRVKHQIDLSPSFDLNLMNQYLYLYMP 346 >gi|284921153|emb|CBG34219.1| probable protease [Escherichia coli 042] Length = 349 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 112/267 (41%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRG-----QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 D+ P V + +G ++ +E I I + +++ L SPGG + Sbjct: 93 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAILAAFK--PQDQVVLRLESPGGMVHG 150 Query: 83 GEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 151 YGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNF 210 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 211 NRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PS 268 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +A + GL+D + +EV SL R++ + + Sbjct: 269 LDIEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLI 322 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S + + + Q + L Sbjct: 323 DRFTGSAAESADRLLLRWWQRGQKPLM 349 >gi|226227659|ref|YP_002761765.1| hypothetical protein GAU_2253 [Gemmatimonas aurantiaca T-27] gi|226090850|dbj|BAH39295.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 502 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 47/216 (21%), Positives = 73/216 (33%), Gaps = 16/216 (7%) Query: 36 PHVARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A I + G + D L + D A+++ SPGG Sbjct: 74 DGIASIPVTGVLTRRASWFDAVCGAVDYTTLALELRSALDDHRVEAVVLQFDSPGGEVSG 133 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + I+ + RKPV V SA Y ++ I T+L G++GV V Sbjct: 134 CSELGEQIRAARERKPVYAYVGGDCCSAAYWLAAQCTEIHVNNTALTGNLGVRMTAHDVS 193 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L I + P +A Q +VD F V+ R++ Sbjct: 194 RRLK--REGIDVITIVSSTTPAKPHDPTTDEAKARCQKIVDDLAAVFHAQVALGRSVEES 251 Query: 203 KT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 + G ++ G +A GL D V E + SL Sbjct: 252 QIYEQYGRGAVFVGVDAVSHGLADAVTTYEALLASL 287 >gi|156393613|ref|XP_001636422.1| predicted protein [Nematostella vectensis] gi|156223525|gb|EDO44359.1| predicted protein [Nematostella vectensis] Length = 279 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 58/267 (21%), Positives = 109/267 (40%), Gaps = 21/267 (7%) Query: 35 SPHVARIAIRGQIEDSQE---------LIERIERISRDDSA--TALIVSLSSPGGSAYAG 83 V I ++G I S + + I+R A+ + ++S GGS Sbjct: 12 KNVVRIIRLQGIINASSSNHRALSLRRVEKAIDRAFEVKKVAPKAVCLEINSTGGSPVQS 71 Query: 84 EAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 I+ I++ N K PV++ V + A S GY +S A + I S VGSIG + V Sbjct: 72 NLIYTRIREQANDKKIPVLSFVEDHALSGGYWLSLAGDEIFVDPNSAVGSIGAVSSNVGV 131 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + KLG+ + V K +P + P+ V+ ++ ++ ++ F+ LV E R Sbjct: 132 VEAMKKLGLEYRPVVMGEHKVRMNPMEPLKPEDVEWVKKILAEVHNNFIDLVKERRTKLD 191 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN--PPKNYW 259 + + G I+ G EA ++GL+D + L +L + + P++++ Sbjct: 192 TTSKTVFSGDIFLGKEAVRIGLVDAITT------DLKSLCKKRFGEDVVFERCDLPQDFF 245 Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQG 286 + + + ++G Sbjct: 246 TRMMNKRFGMEASINVDEALDSLAIRG 272 >gi|145517316|ref|XP_001444541.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124411963|emb|CAK77144.1| unnamed protein product [Paramecium tetraurelia] Length = 239 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 62/210 (29%), Positives = 108/210 (51%), Gaps = 9/210 (4%) Query: 34 NSPHVARIAIRGQIE--DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 P + I + G I+ ++ +++++I + AL V ++SPGG + I + + Sbjct: 9 TKPRIPIIRLSGVIKQKSGDKIQDQLDKIKS-KNLCALAVLINSPGGLPVQSDIICQKLN 67 Query: 92 KVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 K + P+ T ++AAS GY + C + + A ++SLVGS+GV+ Q+ +K L+KLG Sbjct: 68 LFKQKHNIPIYTFAEDVAASGGYFVLCIGDKVFADQSSLVGSVGVISQWHGIKKALEKLG 127 Query: 150 VSIKSVKSSPMKAE--PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 + K + S+ E S FSE NP+ D ++ ++ F+ V R D+ + Sbjct: 128 IEAKFLSSNDQIHEVVNSAFSEFNPQGATQWVDKLEYTHQMFIDHVKSYRKNIVDQ--NV 185 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 ++ G +AK++GLID G EEV L Sbjct: 186 FKAEVYNGEQAKQLGLIDDFGNYEEVLNKL 215 >gi|71083320|ref|YP_266039.1| S49 family peptidase [Candidatus Pelagibacter ubique HTCC1062] gi|91762250|ref|ZP_01264215.1| Peptidase family S49 [Candidatus Pelagibacter ubique HTCC1002] gi|71062433|gb|AAZ21436.1| Peptidase family S49 [Candidatus Pelagibacter ubique HTCC1062] gi|91718052|gb|EAS84702.1| Peptidase family S49 [Candidatus Pelagibacter ubique HTCC1002] Length = 268 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 65/262 (24%), Positives = 126/262 (48%), Gaps = 25/262 (9%) Query: 43 IRGQIEDSQELI---------ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 + G I ++ + E IE+ A A+ ++++SPGGS I++ I+ Sbjct: 16 LNGVIGNAGKFKQGIDFAGQEEIIEKAFSLKKAKAVAITINSPGGSPVQSHLIYKFIRAQ 75 Query: 94 --KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 KN+ VI ++AAS GYLI+CA + I A +S++GSIGV++ + K+GV Sbjct: 76 AKKNKIKVIVFAEDVAASGGYLIACAGDEIYANSSSIIGSIGVIYSSFGFTELIKKIGVE 135 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDG 210 + + K+ PF E + ++ ++++ + F+++V ESR K + L G Sbjct: 136 RRVHTAGKNKSSLDPFQEEKSEDIERLKNIQLDLHKDFIKVVEESRGSKLKKDGIELFSG 195 Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270 W G+++K++GLID +G E+ + + V + K+ + K S S+ Sbjct: 196 EFWAGSKSKELGLIDGLGNANEILKEKFGEDVIIKKFE-------KSKGWLSKKLSSSSN 248 Query: 271 LLEDTIPLMKQTKVQGLWAVWN 292 ++ ++++ ++W Sbjct: 249 QIDQLANILEER------SIWQ 264 >gi|256018482|ref|ZP_05432347.1| putative periplasmic protease [Shigella sp. D9] gi|332279537|ref|ZP_08391950.1| conserved hypothetical protein [Shigella sp. D9] gi|324117536|gb|EGC11442.1| peptidase S49 [Escherichia coli E1167] gi|332101889|gb|EGJ05235.1| conserved hypothetical protein [Shigella sp. D9] Length = 349 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 112/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + + ++ ++ F V R P Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFCEELNETHQLFKDFVKRMR--PSLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349 >gi|171186306|ref|YP_001795225.1| peptidase S49 [Thermoproteus neutrophilus V24Sta] gi|170935518|gb|ACB40779.1| peptidase S49 [Thermoproteus neutrophilus V24Sta] Length = 550 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 97/249 (38%), Gaps = 21/249 (8%) Query: 9 KTRYVMLSLVTLTVVYF-----SWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERIS 61 + L +V L V+ + + P + + + I + +++ + +S Sbjct: 10 IALALALGVVALLAVFTICQPKAPGEAPQPTKPKIVLVPVDFVIGGPETDRVVKALVELS 69 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 + +I+ ++SPGG+ EA++ A++ + K + + AS Y + A+ I Sbjct: 70 QRRDVAGVILIINSPGGTVSGTEALYTALRGLNKTKYAVVVG--LGASGAYYTAVAAERI 127 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 AA +S VGSIGV+ L + P+K + D Sbjct: 128 YAAPSSWVGSIGVVAVIWPD---LYLYDAGDYVYTTGPLKYYGE--------DLLSYYDD 176 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLS-DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 V+ FV+ V E R + ++T EA ++GL+D VGG + + + Sbjct: 177 VEKIRQNFVKAVLEGRRGRIKANPAVFETAGLFTAEEALRLGLVDKVGGVLDAARDMAEE 236 Query: 241 GVDQSIRKI 249 ++ + Sbjct: 237 LGLRNYSLV 245 >gi|238790408|ref|ZP_04634179.1| protease sohB [Yersinia frederiksenii ATCC 33641] gi|238721515|gb|EEQ13184.1| protease sohB [Yersinia frederiksenii ATCC 33641] Length = 335 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 51/270 (18%), Positives = 119/270 (44%), Gaps = 18/270 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGS 79 + + V P + I +G I+ +E+ + + D +++ L SPGG Sbjct: 77 AKAGAVATGKPCLYVIDFKGSIDAHEVTSLREEISAVLAVATAQDE---VLLRLESPGGV 133 Query: 80 AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + +++++++ +T V ++AAS GY+++C ++ I++A +++GSIGV+ Q Sbjct: 134 VHGYGLAASQLERLRHKGIRLTVAVDKVAASGGYMMACVADRIISAPFAIIGSIGVVAQI 193 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P L K + ++ + K + F E + + ++ ++ ++ F + V + R Sbjct: 194 PNFHRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVQQQR- 252 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P ++ G W G +AK+ GL+D +G +++ + + ++ + Sbjct: 253 -PSLDIDAVATGEHWFGTQAKEKGLVDAIGTSDDLL--IAEM----DNHEVIGVRYSRRK 305 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S + ++ + Q + L Sbjct: 306 RLMDRFTGSAAESVDRLLLRWWQRGEKPLL 335 >gi|320539111|ref|ZP_08038782.1| peptidase family S49 domain-containing protein [Serratia symbiotica str. Tucson] gi|320030749|gb|EFW12757.1| peptidase family S49 domain-containing protein [Serratia symbiotica str. Tucson] Length = 286 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 89/219 (40%), Gaps = 14/219 (6%) Query: 38 VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 +A I ++G + + + D + + + SPGG Sbjct: 69 IAVIPVQGTLVQKLGSLRPYSGMTGYDGIRQSFLTAMNDPEVAGICLDIDSPGGEVAGCF 128 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + I KP+ + + E A SA Y I+ A++ I T VGSIGV+ + Sbjct: 129 DLVDEIYHTHGSKPIHSILTENAYSAAYAIASAADRIHVPRTGGVGSIGVIVIHCDWSQR 188 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + + G+++ + KAE +P+ +++ +A +QD VD+ FV V+ +R I Sbjct: 189 IKEDGLAVSIITYGNRKAESNPYVKLSDQARAAIQDDVDTMGRLFVSTVARNRGISEKTI 248 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 + A+ ++GL D V + ++ L+ Sbjct: 249 RNTQAAC-FLAADGVQLGLADAVMTPDAAFRKLFTEAGV 286 >gi|152985660|ref|YP_001348823.1| putative periplasmic protease [Pseudomonas aeruginosa PA7] gi|150960818|gb|ABR82843.1| probable protease [Pseudomonas aeruginosa PA7] Length = 341 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 106/256 (41%), Gaps = 18/256 (7%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAY 81 + + V + G I+ S E+ + +DD +++ L S GG + Sbjct: 83 AKKHPEQKSRVYVLDFDGDIKASATEQLRHEVTAVLSMAGKDDE---VVLRLESGGGMVH 139 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + +++ +T ++AAS GY+++C I++A +++GSIGV+ Q P Sbjct: 140 GYGLAASQLARIRQAGVPLTVCVDKVAASGGYMMACIGERILSAPFAILGSIGVVAQLPN 199 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 V L K + + + + K + F E K + Q+ ++ ++ F V+ R P Sbjct: 200 VHRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLEVTHELFKNFVAHYR--P 257 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G +W G A L+D + +E L ++ + +++ Sbjct: 258 QLNMDEIATGEVWLGQAALGKLLVDELKTSDE---YLAEQARERDVYQVRFVERKS---L 311 Query: 261 CDLKNLSISSLLEDTI 276 + L+ S +++ + Sbjct: 312 QERVGLAASVVIDRVL 327 >gi|269975292|gb|ACZ55516.1| prohead protease ClpP [Staphylococcus phage SA1] Length = 438 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 99/257 (38%), Gaps = 15/257 (5%) Query: 35 SPHVARIAIRGQIED-----------SQELIERIERIS-RDDSATALIVSLSSPGGSAYA 82 S +A I I G + + I + D A+I ++S GG A Sbjct: 75 SNGLAIIPIHGTLINRYGGYYYGYVTGYNFIRSQRNAALADPDVEAIIYDVNSNGGEAAG 134 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + + + + KP + V SA Y ++ A++ IV + GSIGV+ + + Sbjct: 135 CFELSQEMFDTRGEKPSLAVVDSNCYSAAYALASAADKIVVTPSGGAGSIGVIALHIDMS 194 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L +G+++ +KS KA+ +P+ ++ + Q VDS FV LV+++R++ Sbjct: 195 KMLADIGITVNIIKSGEHKADGNPYEPMSDEVRADWQASVDSMRTDFVNLVAQNRDLDPK 254 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 ++ + EA +GLID V + L ++ + Sbjct: 255 VVRD-TEAMCYNAGEAMSIGLIDAVSTPSKAVTEF--LNGPSDNSPDHSGANAMSFTQEE 311 Query: 263 LKNLSISSLLEDTIPLM 279 + + + + Sbjct: 312 MDAARAEAATNERTRIA 328 >gi|323965411|gb|EGB60867.1| peptidase S49 [Escherichia coli M863] Length = 501 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 91/215 (42%), Gaps = 14/215 (6%) Query: 38 VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 +A + + G + ++ +++ D S +++ + SPGG A Sbjct: 78 IAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADTSVRGVLLDIDSPGGQAAGAF 137 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 138 DCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMGHVSYAGH 197 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L + GV I + + K + + F + + Q MQ +D+++ F V+ + D Sbjct: 198 LAQAGVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRIDAAHRMFAEKVAMYTGLSVDAV 257 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 ++ ++ G + GL D + + + A Sbjct: 258 -TGTEAAVFEGQSGIEAGLADELINASDAISVMAA 291 >gi|212634753|ref|YP_002311278.1| putative periplasmic protease [Shewanella piezotolerans WP3] gi|212556237|gb|ACJ28691.1| SohB protein, peptidase U7 family [Shewanella piezotolerans WP3] Length = 343 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 59/244 (24%), Positives = 104/244 (42%), Gaps = 10/244 (4%) Query: 30 HVEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEAI 86 N P V I +G I+ + L E I I D +IV++ S GG + Sbjct: 90 KEPANDPKVFVIDFKGSIDAGEVASLREEISAILTIADKGDEVIVNVESGGGMVHGYGLA 149 Query: 87 FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + +++ P+ V ++AAS GY+++C +N + AA ++VGSIGV+ Q P L Sbjct: 150 SSQLDRLRKAEIPLSICVDKVAASGGYMMACVANKVYAAPFAIVGSIGVVAQVPNFNRLL 209 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K + + + K + F E + + Q ++ ++ F +S+ R P Sbjct: 210 KKHDIDYEQHTAGDFKRTLTIFGENTDEGREKFQKELEETHVLFKEFISKYR--PELDIA 267 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 ++ G W G +A ++GLID V ++V L ++ + K Sbjct: 268 KVATGEHWYGQQAIELGLIDEVATSDDVILKLA----NERTVVKVSYQLKKKLSDKIAHG 323 Query: 266 LSIS 269 S+S Sbjct: 324 ASLS 327 >gi|168704191|ref|ZP_02736468.1| hypothetical protein GobsU_31944 [Gemmata obscuriglobus UQM 2246] Length = 304 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 99/242 (40%), Gaps = 30/242 (12%) Query: 31 VEDNSPHVARIAIRGQIED---------SQE----LIERIERISRDDSATALIVSLSSPG 77 V+ +P +A + + G I + + E++E ++ D A A+++ ++SPG Sbjct: 53 VQGGAPRIALVDVDGLILNTPFVGPLSVGENPVALFREKLEAVACDPCAKAVVLRINSPG 112 Query: 78 GSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 G A A+ +++ K R PV+ + + A Y ++ A++ IVA ++ G +GV+ Sbjct: 113 GGVAACIAMRHDLEQFKARTRLPVVACLMDTATGGAYYLASAADHIVAGPATVTGGLGVV 172 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 ++ + + V + +KS + + +++Q + D + Sbjct: 173 LNLFNLQDLMGMVNVRPQLIKSGERTDIGTSARRLTDGERELLQAMADEFRDRLAADIRR 232 Query: 196 SRNIPYDKTL---------------VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 SR ++ DGRI T +AK L+D VG ++ Sbjct: 233 SRPGVVERLETPFEGSMFGWNLDRGRTFDGRILTAEQAKARNLVDAVGSLDDAISVAAPD 292 Query: 241 GV 242 GV Sbjct: 293 GV 294 >gi|167626930|ref|YP_001677430.1| S49 family serine peptidase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596931|gb|ABZ86929.1| serine peptidase, S49 family [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 214 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 94/206 (45%), Gaps = 11/206 (5%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCASNIIVAAE 125 +IV ++SPGGS + I+ ++ ++ + P+ ++ AS GY I+ + I A + Sbjct: 1 MIVEINSPGGSPVQSDEIYSHMRYLQKKYPNIPMYAVCTDVCASGGYYIAAGAKDIYANK 60 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 ++VGSIGV+ +DKLG+ ++ S K PFS P+ ++D + Sbjct: 61 MTIVGSIGVIGSGFGFTGLMDKLGIERRTYTSGSNKDFLDPFSPERPEQTAQFNKLLDET 120 Query: 186 YHWFVRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 + F+R V +SR G ++G +A+++GLID ++ + + Sbjct: 121 HQVFIRAVEQSRGNRLKDKAIDTTFSGEPFSGIQAQRMGLIDGFASVNQLKRDKF----- 175 Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSIS 269 + I D+ P ++ L S Sbjct: 176 -NNLDIVDYTQPLDFLTAVSNKLGNS 200 >gi|190571676|ref|YP_001976034.1| Putative minor capsid protein c [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357948|emb|CAQ55411.1| Putative minor capsid protein c [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 345 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 101/226 (44%), Gaps = 14/226 (6%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATAL 69 ++ V N A I I G + +++ E+I + D S + Sbjct: 32 IFKKIKHAVNQNIEKTAVIEIHGILTKKPGAFDVFLGMTSYEQIEEQITQALADSSIETI 91 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 I+ + SPGG + I + + +K +I ++ A SA Y I+ ++ + + TS V Sbjct: 92 ILEIDSPGGEVNGIFDLADFIYESRAKKRIIAIANDDAYSAAYAIASSAEKVFVSRTSGV 151 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ + F +K G+ +V + K + +P + ++++ +Q VD Y F Sbjct: 152 GSIGVIASHIDQSGFDEKCGIKYTTVFAGSRKNDLNPHEPMTSESLESLQKEVDRLYEMF 211 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 V+L++ +RN+ + G + G +A ++GL D V E Sbjct: 212 VQLIARNRNLSIEAIKSTEAGLYF-GEKAVEIGLADGVTTFFEFIN 256 >gi|167856276|ref|ZP_02479008.1| putative protease SohB [Haemophilus parasuis 29755] gi|167852600|gb|EDS23882.1| putative protease SohB [Haemophilus parasuis 29755] Length = 351 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 107/255 (41%), Gaps = 13/255 (5%) Query: 27 WSSHVEDNSPHVARIAIRGQI--EDSQELIERIER--ISRDDSATALIVSLSSPGGSAYA 82 + E + + +G I L + I+ +++ L SPGG + Sbjct: 93 GEENPEAEKSRLFVLNFQGDIQASGVSALRKEIDAVLALAKPEKDQVLLKLESPGGVVHG 152 Query: 83 GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +Q++K++ +T V ++AAS GY+++C +N IV+A +++GS+GV+ Q P + Sbjct: 153 YGLAASQLQRLKDKSIPLTVAVDKVAASGGYMMACVANKIVSAPFAVIGSVGVVAQVPNI 212 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + + + + K + E K Q Q ++ ++ F + V++ R P Sbjct: 213 HRLLKKHDIDVDVMTAGEYKRTVTFVGENTEKGKQKFQQELEETHRLFKQFVAQHR--PQ 270 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +A + L+D + +++ + + + + Sbjct: 271 LDIEKIATGEHWFGQQAVEFNLVDELSTSDDLILDAVK------SQDVIEVKYQQKKKLS 324 Query: 262 DLKNLSISSLLEDTI 276 I S +E+ + Sbjct: 325 QRVGEQIESSVENVV 339 >gi|209883973|ref|YP_002287830.1| periplasmic serine protease [Oligotropha carboxidovorans OM5] gi|209872169|gb|ACI91965.1| periplasmic serine protease [Oligotropha carboxidovorans OM5] Length = 448 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 95/250 (38%), Gaps = 16/250 (6%) Query: 31 VEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSPG 77 + +A +++ G + ++ E + D S +I+ + S G Sbjct: 66 TSITAERIAVVSVIGTLVSRSGYLDAASGLQAYDDIAEAVAVAMDDASVRGVILDVDSSG 125 Query: 78 GSAYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 G + I+ + N KP+ +E A SA Y I+ A++ + + T VGSIGV+ Sbjct: 126 GEVGGLFDLVERIKAISSANAKPLWAVANESALSAAYAIASAADRLYVSRTGEVGSIGVV 185 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 + K G++ V + K + + ++ +A +Q VD Y F LV+ Sbjct: 186 AVHIDESGADAKAGLAWTFVFAGDRKVDGNAHEPLSERARATIQADVDRLYFEFCGLVAG 245 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 +R + + + I+ G A + GL D VG + + A + NP Sbjct: 246 NRGLTSETVRGT-NAAIYRGELAIRAGLADRVGTLDLAIAEMAADFDRMASAPRATSNPT 304 Query: 256 KNYWFCDLKN 265 N Sbjct: 305 PRRISSMATN 314 >gi|90581225|ref|ZP_01237023.1| putative sohB protein, peptidase U7 family [Vibrio angustum S14] gi|90437596|gb|EAS62789.1| putative sohB protein, peptidase U7 family [Vibrio angustum S14] Length = 353 Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 102/257 (39%), Gaps = 18/257 (7%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80 S P + I G I+ + E+ + D +++ L + GG Sbjct: 96 NGSLETSRDPRLFVIDFHGSIDAREVSSLREEITAILAVAIEGDE---VLLRLETGGGMV 152 Query: 81 YAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + + ++K V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 HGYGLASSQLDRLKAAGIKLTIAVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQLP 212 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 L K + + + + K + F E KA + Q ++ ++ F ++ R Sbjct: 213 NFNKVLKKNDIDYEQITAGEFKRTLTMFGENTDKAREKFQMEIEETHGLFKNFIAAHR-- 270 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 P ++ G W G +A ++GL+D + +++ R++ + Sbjct: 271 PDLDLEKVATGEHWFGQQAFELGLVDQISTSDDLITEACK------DREVLKIKYVRRKK 324 Query: 260 FCDLKNLSISSLLEDTI 276 + + S + + Sbjct: 325 LAEKLAGASSEAADSLL 341 >gi|330860996|emb|CBX71269.1| putative protease sohB [Yersinia enterocolitica W22703] Length = 305 Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 52/270 (19%), Positives = 119/270 (44%), Gaps = 18/270 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGS 79 + S V P + I +G I+ +E+ + + D +++ L SPGG Sbjct: 47 AKSGAVAAVKPCLYVIDFKGSIDAHEVASLREEISAVLAVATAQDE---VLLRLESPGGV 103 Query: 80 AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + +++++++ +T V ++AAS GY+++C ++ I++A +++GSIGV+ Q Sbjct: 104 VHGYGLAASQLERLRHKGIRLTVAVDKVAASGGYMMACVADRIISAPFAIIGSIGVVAQI 163 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P L K + ++ + K + F E + + ++ ++ ++ F + V + R Sbjct: 164 PNFHRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVHQQR- 222 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P ++ G W G +AK+ GL+D +G +++ + + ++ + Sbjct: 223 -PSLDIDAVATGEHWFGTQAKEKGLVDAIGTSDDLL--IAEM----DNHEVIGVRYSRRK 275 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S + ++ + Q + L Sbjct: 276 RLMDRFTGSAAETVDRLLLRWWQRGEKPLL 305 >gi|332161870|ref|YP_004298447.1| putative periplasmic protease [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666100|gb|ADZ42744.1| putative periplasmic protease [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 348 Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 52/270 (19%), Positives = 119/270 (44%), Gaps = 18/270 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGS 79 + S V P + I +G I+ +E+ + + D +++ L SPGG Sbjct: 90 AKSGAVAAVKPCLYVIDFKGSIDAHEVASLREEISAVLAVATAQDE---VLLRLESPGGV 146 Query: 80 AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + +++++++ +T V ++AAS GY+++C ++ I++A +++GSIGV+ Q Sbjct: 147 VHGYGLAASQLERLRHKGIRLTVAVDKVAASGGYMMACVADRIISAPFAIIGSIGVVAQI 206 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P L K + ++ + K + F E + + ++ ++ ++ F + V + R Sbjct: 207 PNFHRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVHQQR- 265 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P ++ G W G +AK+ GL+D +G +++ + + ++ + Sbjct: 266 -PSLDIDAVATGEHWFGTQAKEKGLVDAIGTSDDLL--IAEM----DNHEVIGVRYSRRK 318 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S + ++ + Q + L Sbjct: 319 RLMDRFTGSAAETVDRLLLRWWQRGEKPLL 348 >gi|323969481|gb|EGB64773.1| peptidase S49 [Escherichia coli TA007] Length = 501 Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 89/212 (41%), Gaps = 14/212 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D + +++ + SPGG A Sbjct: 76 NGIAVLPVTGMLVHRLGGMRPFSGMTGYDGIVACLQQAMADTAVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHLSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + + K + + F + + Q MQ +D+++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALPEEVRQDMQQRIDAAHRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 ++ ++ G + GL D + + Sbjct: 256 VV-TGTEAAVFEGQSGIEAGLADELVNASDAI 286 >gi|89074059|ref|ZP_01160560.1| putative sohB protein, peptidase U7 family protein [Photobacterium sp. SKA34] gi|89050197|gb|EAR55708.1| putative sohB protein, peptidase U7 family protein [Photobacterium sp. SKA34] Length = 353 Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 51/253 (20%), Positives = 102/253 (40%), Gaps = 14/253 (5%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80 S P + I RG I+ + E+ + D +++ L + GG Sbjct: 96 NGSLETSRDPRLFVIDFRGSIDAREVSSLREEITAILAVAIEGDE---VLLRLETGGGMV 152 Query: 81 YAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + + ++K V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 HGYGLASSQLDRLKASGIKLTIAVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQLP 212 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 L K + + + + K + F E KA + Q ++ ++ F ++ R Sbjct: 213 NFNKVLKKNDIDYEQITAGEFKRTLTMFGENTDKAREKFQMEIEETHGLFKNFIAAHR-- 270 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 P ++ G W G +A +GL+D + +++ ++ ++ Sbjct: 271 PDLDLEKVATGEHWFGQQAFDLGLVDQISTSDDLITEACKEREVLKVKYVR--RKKLAEK 328 Query: 260 FCDLKNLSISSLL 272 + + SLL Sbjct: 329 LAGASSEAADSLL 341 >gi|120554450|ref|YP_958801.1| putative periplasmic protease [Marinobacter aquaeolei VT8] gi|120324299|gb|ABM18614.1| inner membrane peptidase, Serine peptidase, MEROPS family S49 [Marinobacter aquaeolei VT8] Length = 353 Score = 90.4 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 106/250 (42%), Gaps = 13/250 (5%) Query: 29 SHVEDNSPHVARIAIRGQI-EDSQELIERIERIS---RDDSATALIVSLSSPGGSAYAGE 84 E+ + V + G I + + R + +++ L S GG +A Sbjct: 96 DATEEKTARVYVLDFDGDIKASDTDTLRRSVSAVLSVANPETDEVVIRLESGGGLVHAYG 155 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + +++++ +T ++AAS GY+++C ++ I+A+ +++GSIGV+ Q P Sbjct: 156 LAAAQLDRIRSKGIKLTACVDKVAASGGYMMACVADRIIASPFAVLGSIGVVAQLPNFHR 215 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL K V + + + K + F E K Q + ++ ++ F VSE R P Sbjct: 216 FLKKNDVDFEVLTAGEHKRTLTIFGENTDKGRQKFLEDLEDTHVLFKEYVSERR--PDLD 273 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 +++G IW G A V LID + +E G + + + + Sbjct: 274 IQAVANGDIWFGKRALDVKLIDEIKTSDEYLIEACERG------DVISVSFQRKRTLPEK 327 Query: 264 KNLSISSLLE 273 L+ S+ LE Sbjct: 328 LGLATSTALE 337 >gi|170727245|ref|YP_001761271.1| putative periplasmic protease [Shewanella woodyi ATCC 51908] gi|169812592|gb|ACA87176.1| Peptidase S49 domain protein [Shewanella woodyi ATCC 51908] Length = 343 Score = 90.4 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 107/261 (40%), Gaps = 14/261 (5%) Query: 30 HVEDNSPHVARIAIRGQIEDSQ--ELIERIER--ISRDDSATALIVSLSSPGGSAYAGEA 85 + P V + +G I+ ++ L E I + A++ ++ S GG + Sbjct: 90 KEPVSEPRVFVVDFKGSIDANEVSSLREEISAIIAIAEPGDEAIV-NVESGGGMVHGYGL 148 Query: 86 IFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + ++ + + V ++AAS GY+++C +N + AA ++VGSIGV+ Q P Sbjct: 149 ASSQLDRLRQANIHLTICVDKVAASGGYMMACVANKVYAAPFAIVGSIGVVAQVPNFNKL 208 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K + + + K + F E + + Q ++ ++ F +S+ R P + Sbjct: 209 LKKHDIDYEQHTAGDFKRTLTVFGENTDEGREKFQQELEETHELFKGFISQYR--PELEL 266 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 ++ G W G +A ++GLID + ++V +L R + F D Sbjct: 267 AKVATGEHWYGQQAIELGLIDAIATSDDVVMNLAK------ERTVIRVKYQLKKKFADKL 320 Query: 265 NLSISSLLEDTIPLMKQTKVQ 285 + S + M + Sbjct: 321 AHAASLSVSSVFNKMAEKNQP 341 >gi|220921986|ref|YP_002497287.1| peptidase S49 [Methylobacterium nodulans ORS 2060] gi|219946592|gb|ACL56984.1| peptidase S49 [Methylobacterium nodulans ORS 2060] Length = 302 Score = 90.4 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 15/229 (6%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATAL 69 + + + V VA + +RG I ++ + RD A+ Sbjct: 47 ISNAQAKEVARREGAVAVLPLRGVIANRMNLMGDISGGTSAEAFRHAFQGALRDPEVKAI 106 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 ++ + SPGG+ + + I + KP++ V AASA Y I+ A++ +V T V Sbjct: 107 VLDVDSPGGAVSGSDELSSMIFAARGTKPIVAHVDATAASAAYWIASAADEVVVTPTGAV 166 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV + + +KLGV + + KA+ ++ A+ Q V+++Y F Sbjct: 167 GSIGVFGIHDDLSGAREKLGVKRTIISAGRFKADGVA-GPLDDAALARRQARVEAAYDMF 225 Query: 190 VRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 VR V+ +RN+ G + A A G+ D +G +E Q L Sbjct: 226 VRAVARNRNVSLSAVRDGFGQGDMVDAAPAVAEGMADRLGTLDETLQRL 274 >gi|82544274|ref|YP_408221.1| periplasmic protease [Shigella boydii Sb227] gi|187730620|ref|YP_001880101.1| putative periplasmic protease [Shigella boydii CDC 3083-94] gi|81245685|gb|ABB66393.1| putative protease [Shigella boydii Sb227] gi|187427612|gb|ACD06886.1| peptidase, S49 (protease IV) family [Shigella boydii CDC 3083-94] gi|320187510|gb|EFW62196.1| putative protease sohB [Shigella flexneri CDC 796-83] gi|332094825|gb|EGI99869.1| peptidase family S49 family protein [Shigella boydii 3594-74] Length = 349 Score = 90.4 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 213 FLKSKYIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349 >gi|320176687|gb|EFW51725.1| putative protease sohB [Shigella dysenteriae CDC 74-1112] Length = 344 Score = 90.4 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 88 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 147 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 148 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 207 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 208 FLKSKYIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 265 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 266 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 319 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 320 FTGSAAESADRLLLRWWQRGQKPLM 344 >gi|157160777|ref|YP_001458095.1| putative periplasmic protease [Escherichia coli HS] gi|170020364|ref|YP_001725318.1| putative periplasmic protease [Escherichia coli ATCC 8739] gi|188492727|ref|ZP_02999997.1| peptidase, S49 (protease IV) family [Escherichia coli 53638] gi|312971461|ref|ZP_07785636.1| peptidase family S49 family protein [Escherichia coli 1827-70] gi|157066457|gb|ABV05712.1| peptidase, S49 (protease IV) family [Escherichia coli HS] gi|169755292|gb|ACA77991.1| Peptidase S49 domain protein [Escherichia coli ATCC 8739] gi|188487926|gb|EDU63029.1| peptidase, S49 (protease IV) family [Escherichia coli 53638] gi|310336058|gb|EFQ01258.1| peptidase family S49 family protein [Escherichia coli 1827-70] Length = 349 Score = 90.4 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 325 LTGSAAESADRLLLRWWQRGQKPLM 349 >gi|319405933|emb|CBI79564.1| putative capsid protein of prophage [Bartonella sp. AR 15-3] Length = 361 Score = 90.4 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 85/219 (38%), Gaps = 16/219 (7%) Query: 36 PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +VA + + G + + L A+++ + S GG A Sbjct: 66 NNVAILPVHGTLVRRSAWLGSLSGLTSYEGLSASFREAMAQPDVRAVLLDIDSGGGEAGG 125 Query: 83 GEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + Q + KP+ +E A SA Y I+C+++ I A T +VGSIGV+ + Sbjct: 126 VFDLVEEFQTLSKQYNKPIWAHANEFACSAAYAIACSASQIWVARTGVVGSIGVVCAHLD 185 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 +K G+ V K +P ++ A MQ Y FV V+++R + Sbjct: 186 QSRADEKHGLKWTFVFEGDHKVHGNPHEPLSDTAQIKMQADCALLYEMFVDWVAQNRPLN 245 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 D + G +A K+GL D G + ++L Sbjct: 246 ADAIRDTK-AETFIGTQALKLGLADAQGTLAQALEALTD 283 >gi|171913618|ref|ZP_02929088.1| signal peptide peptidase SppA, 36K type [Verrucomicrobium spinosum DSM 4136] Length = 276 Score = 90.4 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 19/218 (8%) Query: 37 HVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +VA I I G I D + + E +++ D + T +++ + SPGG Sbjct: 62 NVAIIRIDGVIDKRLAALEAECFGGVDLEVIDEALQQAEHDRAVTHVVLDIHSPGGGVTG 121 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I ++ K V V+ A SA Y ++ +++I AA +S +GSIGV Sbjct: 122 TPETAARIARLAQTKEVHAFVNCQACSAAYWLASQADVIAAAPSSCIGSIGVYMALLDET 181 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+ G ++ +K+ KA + F ++ + + Q VDS Y F + V+ SR I Sbjct: 182 RALEMEGYTVNLIKAGKHKAMGASFQKLTDEERAIFQGQVDSIYADFKKAVTASRRI--- 238 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 G+ + G A K+GL+DV+ + + + L Sbjct: 239 -ADSTMQGQSFDGKTALKLGLVDVL-TSDSLEEYAGRL 274 >gi|319408485|emb|CBI82140.1| putative capsid protein of prophage [Bartonella schoenbuchensis R1] gi|319409130|emb|CBI82774.1| putative capsid protein of prophage [Bartonella schoenbuchensis R1] Length = 280 Score = 90.4 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 88/229 (38%), Gaps = 16/229 (6%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALI 70 F HVA + + G + L E + A++ Sbjct: 48 IFQAPPETYVVKNHVAILPVHGTLVRRGAWLSAASGLTSYNGLREAFQEAIGQPDVRAIL 107 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSL 128 + + S GG A + A + + KP+ +EMA SA Y I+CA++ I A T + Sbjct: 108 LDIDSGGGEAGGVFDLVDAFRALSQEYNKPIWAHANEMACSAAYAIACAASQIWVARTGI 167 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 VGSIGV+ + + G V K +P + KA++ MQ Y Sbjct: 168 VGSIGVVCAHLDQSRADEMDGYKWTFVYEGDHKVHGNPHEPLADKALEKMQADCALLYDM 227 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 FV LV+++R + G +A ++GL D G + ++L Sbjct: 228 FVDLVAQNRPTSAQAIRDTK-AETFIGTQAVELGLADAQGTFAQALEAL 275 >gi|262278270|ref|ZP_06056055.1| periplasmic serine protease [Acinetobacter calcoaceticus RUH2202] gi|262258621|gb|EEY77354.1| periplasmic serine protease [Acinetobacter calcoaceticus RUH2202] Length = 320 Score = 90.4 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 110/260 (42%), Gaps = 13/260 (5%) Query: 33 DNSPHVARIAIRGQIEDS--QELIERIERISRDDSA--TALIVSLSSPGGSAYAGEAIFR 88 N+ + + +G I+ S + + E I I A ++V L SPGG + Sbjct: 54 KNNQKIFVLDFKGDIQASAVENIREEITLILATAKAGRDRVVVRLESPGGMVHGYGLAAA 113 Query: 89 AIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + ++++ + V ++AAS GY+++C +N I+ A ++VGSIGV+ Q P L + Sbjct: 114 QLVRLRDAGFHLTICVDKVAASGGYMMACIANEIITAPFAIVGSIGVVAQVPNFNRLLKE 173 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 V + + K + F E P+ ++ + ++ F V + R P + Sbjct: 174 HNVDFELYTAGQYKRTVTMFGENTPEGKAKFEEELQQTHVLFKHFVEKYR--PQLNVDKV 231 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G W G +A + L+D + +E +L A + N + + L Sbjct: 232 ATGEHWYGEDALNLNLVDKLQTSDEYLLALLAQH------DVYVINTRRKATLGEKLGLQ 285 Query: 268 ISSLLEDTIPLMKQTKVQGL 287 + + + IP + ++ L Sbjct: 286 AAQMADSLIPAVMNKVMENL 305 >gi|333004586|gb|EGK24110.1| peptidase family S49 family protein [Shigella flexneri VA-6] Length = 349 Score = 90.4 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349 >gi|261821585|ref|YP_003259691.1| periplasmic protease [Pectobacterium wasabiae WPP163] gi|261605598|gb|ACX88084.1| Peptidase S49 domain protein [Pectobacterium wasabiae WPP163] Length = 348 Score = 90.1 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 103/246 (41%), Gaps = 10/246 (4%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATA-LIVSLSSPGGSAYA 82 + + P + + G ++ + L E I + +++ L SPGG + Sbjct: 90 AKRGEEKSVKPCLYVLDFNGSMDAGEVSSLREEISAVLAVAKPKDEVLLRLESPGGVVHG 149 Query: 83 GEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +Q+++ V ++AAS GY+++C ++ IVAA ++VGSIGV+ Q P Sbjct: 150 YGLAASQLQRLRQGGVRLTVSVDKVAASGGYMMACVADRIVAAPFAIVGSIGVVAQIPNF 209 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L + ++ + K + F E + + ++ ++ ++ F V + R P Sbjct: 210 HRLLKNKDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNVTHTLFKDFVQQMR--PS 267 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +AK +GLID +G +++ + + + + + K Sbjct: 268 LDIDSVATGEHWFGTQAKDLGLIDAIGTSDDLL--IAEMANHEVLS--VRYTRRKRLLDR 323 Query: 262 DLKNLS 267 + Sbjct: 324 LTGSAG 329 >gi|123442462|ref|YP_001006441.1| putative periplasmic protease [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089423|emb|CAL12271.1| peptidase family U7 protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 348 Score = 90.1 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 52/270 (19%), Positives = 119/270 (44%), Gaps = 18/270 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGS 79 + S V P + I +G I+ +E+ + + D +++ L SPGG Sbjct: 90 AKSGAVAAVKPCLYVIDFKGSIDAHEVASLREEISAVLAVATAQDE---VLLRLESPGGV 146 Query: 80 AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + +++++++ +T V ++AAS GY+++C ++ I++A +++GSIGV+ Q Sbjct: 147 VHGYGLAASQLERLRHKGIRLTVAVDKVAASGGYMMACVADRIISAPFAIIGSIGVVAQI 206 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P L K + ++ + K + F E + + ++ ++ ++ F + V + R Sbjct: 207 PNFHRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVHQQR- 265 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P ++ G W G +AK+ GL+D +G +++ + + ++ + Sbjct: 266 -PSLDIDAVATGEHWFGTQAKEKGLVDAIGTSDDLL--IAEM----DNHEVIGVRYSRRK 318 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S + ++ + Q + L Sbjct: 319 RLMDRFTGSAAESVDRLLLRWWQRGEKPLL 348 >gi|312114779|ref|YP_004012375.1| peptidase S49 [Rhodomicrobium vannielii ATCC 17100] gi|311219908|gb|ADP71276.1| peptidase S49 [Rhodomicrobium vannielii ATCC 17100] Length = 285 Score = 90.1 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 93/218 (42%), Gaps = 16/218 (7%) Query: 35 SPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 ++A + I G + + + + I ++ D +I+ + S GG A Sbjct: 63 EGNIAVLPIMGTLVRRLSWIEAESGLTSYKTITDDITQLMLDPYIRGVILEIDSYGGEAG 122 Query: 82 AGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + I+K++ + KP+ +E AASA Y I+CA+ + A T VGSIGV+ + Sbjct: 123 GVFDLADFIRKIQRQTGKPIYAHANENAASAAYAIACAAEKVWVARTGEVGSIGVICAHL 182 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 +K G+ + + K +P + +A +Q VD Y FV+ V+ R + Sbjct: 183 DQSQADEKAGLRWTFISAGERKTWGNPHEPLGDEARARVQADVDWLYDEFVKTVARYRGM 242 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 ++ G +A VGL D G +E + L Sbjct: 243 RPADIRATK-ADVFRGEDAVGVGLADASGTLDECFDVL 279 >gi|145591098|ref|YP_001153100.1| peptidase S49 [Pyrobaculum arsenaticum DSM 13514] gi|145282866|gb|ABP50448.1| peptidase S49 [Pyrobaculum arsenaticum DSM 13514] Length = 552 Score = 90.1 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 50/262 (19%), Positives = 102/262 (38%), Gaps = 22/262 (8%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 + P + + I ++ S +I + +++ +++ ++SPGG+ A E Sbjct: 34 GQTPAAPPKPKIVLVPIDFVLDSSPVDGVIRDLVSLAQRKDVAGVVLVINSPGGTVSATE 93 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 A++ A+ + K + + +AAS Y ++ A+ I A +S VGSIGV+ + F Sbjct: 94 ALYSALAGLNKTKYAVV--NGLAASGAYYVAMAAEKIYATPSSWVGSIGVVAVMWPDEYF 151 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 D + + P+K + + ++ FV+ V R Sbjct: 152 YD---IPDYVYTTGPLKYYGK--------ELTDYYNDIERVRMNFVQAVLRGRAGRIKAD 200 Query: 205 LVLS-DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 + I+T +A ++GL+D VGG + + + +K++ + Sbjct: 201 PQVFETAAIFTAEDALRLGLVDAVGGVFDAVRDMAQRLG------LKEYEVKFLRELGNA 254 Query: 264 KNLSISSLLEDTIPLMKQTKVQ 285 ++ D LM T V Sbjct: 255 SASPAAAFRVDLERLMNSTPVP 276 >gi|90423538|ref|YP_531908.1| peptidase S49 [Rhodopseudomonas palustris BisB18] gi|90105552|gb|ABD87589.1| peptidase S49 [Rhodopseudomonas palustris BisB18] Length = 262 Score = 90.1 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 112/252 (44%), Gaps = 12/252 (4%) Query: 38 VARIAIRGQIEDS----QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 VA + +RG+I S Q+L+ + +++ + A ALI++L + GG+ E I + + Sbjct: 17 VAVLRLRGEIAVSSAMIQDLLNVLPQLTPQEHA-ALIITLETAGGTLTCAENIMGWVDHL 75 Query: 94 KN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 PVI + E SAG I+ + ++A ++++G+ GV+ +P +LG+ Sbjct: 76 YRRLSCPVIAVIEERCLSAGLAIAACCDHVIAQPSAMIGAFGVMMTWPGENRLRAQLGLL 135 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 K++ +K SP + + V+ + F L+ + R I + + DGR Sbjct: 136 ATVYKTTALKDFGSPHRAPTAEDDAAIHSVLQDIHGQFAELIRDRRGIGGGEIDEIFDGR 195 Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 + TG A ++GL+D +GG E Q L A GV + + S Sbjct: 196 LITGRRALEIGLVDQLGGFETALQWLNANGVSVGEPPHMLI-----FLGNASPSGQSSGG 250 Query: 272 LEDTIPLMKQTK 283 + + + + T Sbjct: 251 VLELLRTLVHTS 262 >gi|260776312|ref|ZP_05885207.1| SohB protein peptidase U7 family [Vibrio coralliilyticus ATCC BAA-450] gi|260607535|gb|EEX33800.1| SohB protein peptidase U7 family [Vibrio coralliilyticus ATCC BAA-450] Length = 349 Score = 90.1 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 108/261 (41%), Gaps = 14/261 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 PH+ + +G I+ +E+ + D +++ L S GG + Sbjct: 93 GDLDSKREPHLFVLDFKGSIDAKEVASLREEVTAILAVAREGDE---VLLRLESGGGMVH 149 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + ++K K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 150 GYGLASSQLDRIKAAKLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIAQLPN 209 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E KA + ++ ++ F + E R P Sbjct: 210 FNKVLKKYDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHGLFKDFIRERR--P 267 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 + ++ G W G +A +GL+D + +++ +I ++ Sbjct: 268 ELELDKVATGEHWFGTQAHSLGLVDEIKTSDDLVVEACKDKTVLAIHYVE--KKKLTSKL 325 Query: 261 CDLKNLSISSLLEDTIPLMKQ 281 L + ++L I ++ Sbjct: 326 AGLAGEAADNVLMKLIDRGQR 346 >gi|254240224|ref|ZP_04933546.1| hypothetical protein PA2G_00866 [Pseudomonas aeruginosa 2192] gi|126193602|gb|EAZ57665.1| hypothetical protein PA2G_00866 [Pseudomonas aeruginosa 2192] Length = 341 Score = 90.1 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 107/256 (41%), Gaps = 18/256 (7%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAY 81 + + V + G I+ S E+ + +DD +++ L S GG + Sbjct: 83 AKKHPEQKSRVYVLDFDGDIKASATEQLRHEVTAVLSMAGKDDE---VVLRLESGGGMVH 139 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + +++ +T ++AAS GY+++C + I++A +++GSIGV+ Q P Sbjct: 140 GYGLAASQLARIRQAGVPLTVCVDKVAASGGYMMACIGDRILSAPFAILGSIGVVAQLPN 199 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 V L K + + + + K + F E K + Q+ ++ ++ F V+ R P Sbjct: 200 VHRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLEVTHELFKNFVAHYR--P 257 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G +W G A L+D + +E L ++ + +++ Sbjct: 258 QLNMDEIATGEVWLGQAALGKLLVDELKTSDE---YLAEQARERDVYQVQFVERKS---L 311 Query: 261 CDLKNLSISSLLEDTI 276 + L+ S +++ + Sbjct: 312 QERVGLAASVVIDRVL 327 >gi|227326049|ref|ZP_03830073.1| putative periplasmic protease [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 348 Score = 90.1 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 102/247 (41%), Gaps = 12/247 (4%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATA-LIVSLSSPGGSAYA 82 + + P + + G ++ + L E I + +++ L SPGG + Sbjct: 90 AKRGEEKSVKPCLYVLDFNGSMDAGEVSSLREEISAVLAVAKPKDEVLLRLESPGGVVHG 149 Query: 83 GEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +Q+++ V ++AAS GY+++C ++ IVAA ++VGSIGV+ Q P Sbjct: 150 YGLAASQLQRLRQGGVRLTVSVDKVAASGGYMMACVADRIVAAPFAIVGSIGVVAQIPNF 209 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L + ++ + K + F E + + ++ ++ ++ F V + R P Sbjct: 210 HRLLKNKDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNVTHTLFKDFVQQMR--PS 267 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE-VWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +AK +GL+D +G ++ + + + V + K Sbjct: 268 LDIDSVATGEHWFGTQAKDLGLVDAIGTSDDLLIAEMASHEVLS-----VRYTRRKRLLD 322 Query: 261 CDLKNLS 267 + Sbjct: 323 RLTGSAG 329 >gi|91782762|ref|YP_557968.1| serine peptidase [Burkholderia xenovorans LB400] gi|91686716|gb|ABE29916.1| protein C, Serine peptidase, MEROPS family S49 [Burkholderia xenovorans LB400] Length = 293 Score = 90.1 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 87/218 (39%), Gaps = 14/218 (6%) Query: 38 VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 VA + I G + + + D+S A+++ + SPGG Sbjct: 77 VAIVPIEGTLVHKLGELRPYSGMTGYDGIRANLSMAMADESVRAIVLDIDSPGGEVAGCF 136 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + +I ++ KP+ E A SA Y I+ A++ I+ T GS+GV+ + Sbjct: 137 DLVDSIYAARDVKPIWAICTESAYSAAYAIATAASRIIVPRTGGTGSVGVICMHVDFSQA 196 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K G+ ++ + KA+ S ++ A Q VD+ FV V+ +R + Sbjct: 197 LTKAGIEVELIYFGDKKADGSDMKPLSKDARARFQSDVDAMGQLFVETVARNRGLTTANV 256 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 G + GA ++G D V +E + SL Sbjct: 257 RGTQAGT-FLGAAGVEIGFADAVMSPDEAFASLLDELG 293 >gi|293609754|ref|ZP_06692056.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828206|gb|EFF86569.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 320 Score = 90.1 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 58/260 (22%), Positives = 110/260 (42%), Gaps = 13/260 (5%) Query: 33 DNSPHVARIAIRGQIEDS--QELIERIERISRDDSA--TALIVSLSSPGGSAYAGEAIFR 88 N+ + + +G I+ S + L E I I A ++V L SPGG + Sbjct: 54 KNNQKIFVLDFKGDIQASAVENLREEITLILATAKAGRDRIVVRLESPGGMVHGYGLAAA 113 Query: 89 AIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + ++++ + V ++AAS GY+++C +N I+AA ++VGSIGV+ Q P L + Sbjct: 114 QLVRLRDAGFHLTICVDKVAASGGYMMACIANEIIAAPFAIVGSIGVVAQVPNFNRLLKE 173 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 V + + K + F E P+ ++ + ++ F V + R P + Sbjct: 174 HNVDFELYTAGQYKRTVTMFGENTPEGKAKFEEELQQTHVLFKHFVEKYR--PQLNVDKV 231 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G W G +A + L+D + +E +L + N K + L Sbjct: 232 ATGEHWYGEDALDLNLVDKLQTSDEYLLALL------PQHDVYVINTRKKATLGEKLGLQ 285 Query: 268 ISSLLEDTIPLMKQTKVQGL 287 + + + IP + ++ L Sbjct: 286 AAQMADSLIPTVMSKVMESL 305 >gi|194435042|ref|ZP_03067281.1| peptidase, S49 (protease IV) family [Shigella dysenteriae 1012] gi|194416699|gb|EDX32829.1| peptidase, S49 (protease IV) family [Shigella dysenteriae 1012] gi|320181714|gb|EFW56625.1| putative protease sohB [Shigella boydii ATCC 9905] gi|332098384|gb|EGJ03357.1| peptidase family S49 family protein [Shigella dysenteriae 155-74] Length = 349 Score = 90.1 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 271 IDQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349 >gi|49087080|gb|AAT51414.1| PA1832 [synthetic construct] Length = 342 Score = 90.1 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 107/256 (41%), Gaps = 18/256 (7%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAY 81 + + V + G I+ S E+ + +DD +++ L S GG + Sbjct: 83 AKKHPEQKSRVYVLDFDGDIKASATEQLRHEVTAVLSMAGKDDE---VVLRLESGGGMVH 139 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + +++ +T ++AAS GY+++C + I++A +++GSIGV+ Q P Sbjct: 140 GYGLAASQLARIRQAGVPLTVCVDKVAASGGYMMACIGDRILSAPFAILGSIGVVAQLPN 199 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 V L K + + + + K + F E K + Q+ ++ ++ F V+ R P Sbjct: 200 VHRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLEVTHELFKNFVAHYR--P 257 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G +W G A L+D + +E L ++ + +++ Sbjct: 258 QLNMDEIATGEVWLGQAALGKLLVDELKTSDE---YLAEQARERDVYQVQFVERKS---L 311 Query: 261 CDLKNLSISSLLEDTI 276 + L+ S +++ + Sbjct: 312 QERVGLAASVVIDRVL 327 >gi|93006012|ref|YP_580449.1| putative periplasmic protease [Psychrobacter cryohalolentis K5] gi|92393690|gb|ABE74965.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Psychrobacter cryohalolentis K5] Length = 326 Score = 90.1 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 47/261 (18%), Positives = 104/261 (39%), Gaps = 12/261 (4%) Query: 37 HVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 V + G I+ + +E+ I ++ D ++V L S GG + + Sbjct: 69 QVFVLDFDGDIKATAVKHLREEISTLISTANKGDE---VVVRLESGGGVVHGYGLAAAQL 125 Query: 91 QKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 ++K+ +T ++AAS GY+++C ++ IVAA +++GSIGV+ Q P +L Sbjct: 126 ARLKDAGLKLTVCVDKVAASGGYMMACVADNIVAAPFAIIGSIGVVSQLPNFHKWLKNHD 185 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 V + + K + F E + + Q+ ++ ++ F V+ R + ++ Sbjct: 186 VDYEMFTAGDYKRTVTVFGENDDEDRAKYQEELEQTHELFKHFVNRYRGML--DVDKVAT 243 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 G W G +A + L+D + + ++ + + +IS Sbjct: 244 GEHWYGEDALHLNLVDKLQTSDSYLLERMENNEVYALHSRQKPTLAEKLGLSQAAEATIS 303 Query: 270 SLLEDTIPLMKQTKVQGLWAV 290 ++ + + + + Sbjct: 304 MAVDKLPDALARFDLNSRLNI 324 >gi|26247601|ref|NP_753641.1| putative periplasmic protease [Escherichia coli CFT073] gi|227886299|ref|ZP_04004104.1| S49 family SohB endopeptidase [Escherichia coli 83972] gi|300982409|ref|ZP_07176106.1| putative signal peptide peptidase SppA [Escherichia coli MS 45-1] gi|301046935|ref|ZP_07194049.1| putative signal peptide peptidase SppA [Escherichia coli MS 185-1] gi|331646595|ref|ZP_08347698.1| putative protease SohB [Escherichia coli M605] gi|331657319|ref|ZP_08358281.1| putative protease SohB [Escherichia coli TA206] gi|26108003|gb|AAN80203.1|AE016760_62 Possible protease sohB [Escherichia coli CFT073] gi|227836503|gb|EEJ46969.1| S49 family SohB endopeptidase [Escherichia coli 83972] gi|281178462|dbj|BAI54792.1| putative protease [Escherichia coli SE15] gi|300301161|gb|EFJ57546.1| putative signal peptide peptidase SppA [Escherichia coli MS 185-1] gi|300408747|gb|EFJ92285.1| putative signal peptide peptidase SppA [Escherichia coli MS 45-1] gi|307553330|gb|ADN46105.1| possible protease sohB [Escherichia coli ABU 83972] gi|315294752|gb|EFU54095.1| putative signal peptide peptidase SppA [Escherichia coli MS 153-1] gi|330911137|gb|EGH39647.1| putative protease sohB [Escherichia coli AA86] gi|331045347|gb|EGI17474.1| putative protease SohB [Escherichia coli M605] gi|331055567|gb|EGI27576.1| putative protease SohB [Escherichia coli TA206] Length = 349 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349 >gi|24349038|gb|AAN55947.1|AE015732_5 sohB protein, peptidase U7 family [Shewanella oneidensis MR-1] Length = 342 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 111/244 (45%), Gaps = 10/244 (4%) Query: 30 HVEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEAI 86 ++ V + +G I+ ++ L E I I + ++V++ S GG + Sbjct: 90 DEGESKGKVFVVDFKGSIDAAEVASLREEISAILTIAEKGDEVVVNVESGGGMVHGYGLA 149 Query: 87 FRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + ++ + P+ V ++AAS GY+++C +N + AA ++VGSIGV+ Q P L Sbjct: 150 SSQLDRLRQADIPLTVCVDKVAASGGYMMACVANKVYAAPFAIVGSIGVVAQLPNFNRLL 209 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K + + + K + F E + Q Q ++ ++ F VS+ R P Sbjct: 210 KKHEIDYEQHTAGDFKRTLTVFGENTDEGRQKFQQELEETHVLFKAFVSKYR--PQLDLA 267 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 ++ G W G +A ++GLID + ++V L L ++++ K++ + K Sbjct: 268 KVATGEHWYGQQAIELGLIDAISTSDDV---LMHLAGERTVYKLR-YQVRKKLADKIAHG 323 Query: 266 LSIS 269 S+S Sbjct: 324 ASLS 327 >gi|261867946|ref|YP_003255868.1| putative periplasmic protease [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413278|gb|ACX82649.1| S49 family peptidase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 352 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 113/264 (42%), Gaps = 17/264 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80 + E+ P + + +G I S+ E+ I+ ++V L SPGG Sbjct: 95 GENPAEERKPTLYVLHFKGDISASETAALREEISAIIQVA---KPTDEVLVCLESPGGVV 151 Query: 81 YAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + + ++K R +T V ++AAS GY+++C ++ IV+A +++GSIGV+ Q P Sbjct: 152 HGYGLAASQLMRLKQRNIRLTVAVDKVAASGGYMMACVADKIVSAPFAIIGSIGVVAQIP 211 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 V L K V + + + K + F E K Q Q ++ ++ F + V+++R Sbjct: 212 NVHRLLKKHDVDVDVMTAGEYKRTMTIFGENTEKGKQKFQQELEETHQLFKQFVAQNR-- 269 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 P+ ++ G W G +A + L+D + +++ ++ K Sbjct: 270 PHLDLDKVATGEHWFGQQALNLNLVDEIMTSDDLLLQAMKEKSVIGVKYAV-----KKSL 324 Query: 260 FCDLKNLSISSLLEDTIPLMKQTK 283 + + S + +K+ + Sbjct: 325 LQKVGKQAEESADNIALRWLKKNE 348 >gi|215486567|ref|YP_002328998.1| putative periplasmic protease [Escherichia coli O127:H6 str. E2348/69] gi|312966800|ref|ZP_07781018.1| peptidase family S49 family protein [Escherichia coli 2362-75] gi|215264639|emb|CAS09010.1| predicted inner membrane peptidase [Escherichia coli O127:H6 str. E2348/69] gi|312288264|gb|EFR16166.1| peptidase family S49 family protein [Escherichia coli 2362-75] gi|320195715|gb|EFW70340.1| putative protease sohB [Escherichia coli WV_060327] gi|323964610|gb|EGB60083.1| peptidase S49 [Escherichia coli M863] gi|323977096|gb|EGB72183.1| peptidase S49 [Escherichia coli TW10509] gi|327253963|gb|EGE65592.1| peptidase family S49 family protein [Escherichia coli STEC_7v] Length = 349 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349 >gi|91210563|ref|YP_540549.1| putative periplasmic protease [Escherichia coli UTI89] gi|110641504|ref|YP_669234.1| putative periplasmic protease [Escherichia coli 536] gi|117623532|ref|YP_852445.1| putative periplasmic protease [Escherichia coli APEC O1] gi|191170896|ref|ZP_03032447.1| peptidase, S49 (protease IV) family [Escherichia coli F11] gi|218558258|ref|YP_002391171.1| periplasmic protease [Escherichia coli S88] gi|237705296|ref|ZP_04535777.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|300971798|ref|ZP_07171632.1| putative signal peptide peptidase SppA [Escherichia coli MS 200-1] gi|306813705|ref|ZP_07447886.1| putative periplasmic protease [Escherichia coli NC101] gi|91072137|gb|ABE07018.1| possible protease SohB [Escherichia coli UTI89] gi|110343096|gb|ABG69333.1| possible protease SohB [Escherichia coli 536] gi|115512656|gb|ABJ00731.1| possible protease SohB [Escherichia coli APEC O1] gi|190908628|gb|EDV68216.1| peptidase, S49 (protease IV) family [Escherichia coli F11] gi|218365027|emb|CAR02730.1| putative inner membrane peptidase [Escherichia coli S88] gi|222033076|emb|CAP75816.1| protease sohB [Escherichia coli LF82] gi|226900053|gb|EEH86312.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|294493202|gb|ADE91958.1| peptidase, S49 (protease IV) family [Escherichia coli IHE3034] gi|300309304|gb|EFJ63824.1| putative signal peptide peptidase SppA [Escherichia coli MS 200-1] gi|305852979|gb|EFM53424.1| putative periplasmic protease [Escherichia coli NC101] gi|307627154|gb|ADN71458.1| putative periplasmic protease [Escherichia coli UM146] gi|312945906|gb|ADR26733.1| putative periplasmic protease [Escherichia coli O83:H1 str. NRG 857C] gi|315289110|gb|EFU48508.1| putative signal peptide peptidase SppA [Escherichia coli MS 110-3] gi|323949125|gb|EGB45017.1| peptidase S49 [Escherichia coli H252] gi|323953857|gb|EGB49658.1| peptidase S49 [Escherichia coli H263] gi|324006118|gb|EGB75337.1| putative signal peptide peptidase SppA [Escherichia coli MS 57-2] gi|324011315|gb|EGB80534.1| putative signal peptide peptidase SppA [Escherichia coli MS 60-1] Length = 349 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 114/265 (43%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 V D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GEVVTDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349 >gi|113969812|ref|YP_733605.1| putative periplasmic protease [Shewanella sp. MR-4] gi|113884496|gb|ABI38548.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Shewanella sp. MR-4] Length = 338 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 110/240 (45%), Gaps = 10/240 (4%) Query: 34 NSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEAIFRAI 90 + V I +G I+ ++ L E I I + ++V++ S GG + + Sbjct: 90 SKGKVFVIDFKGSIDAAEVASLREEISAILTIAEKGDEVVVNVESGGGMVHGYGLASSQL 149 Query: 91 QKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 ++ + P+ V ++AAS GY+++C +N + AA ++VGSIGV+ Q P L K Sbjct: 150 DRLRQAEIPLTICVDKVAASGGYMMACVANKVYAAPFAIVGSIGVVAQLPNFNRLLKKHE 209 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + + + K + F E + Q Q ++ ++ F VS+ R P ++ Sbjct: 210 IDYEQHTAGDFKRTLTVFGENTDEGRQKFQQELEETHVLFKAFVSKYR--PQLDLAKVAT 267 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 G W G +A ++GLID + ++V L L ++++ K++ + K S+S Sbjct: 268 GEHWYGQQAIELGLIDAISTSDDV---LMQLAGERTVYKLR-YQVRKKLADKIAHGASLS 323 >gi|331006608|ref|ZP_08329895.1| SohB protein, peptidase U7 family [gamma proteobacterium IMCC1989] gi|330419592|gb|EGG93971.1| SohB protein, peptidase U7 family [gamma proteobacterium IMCC1989] Length = 359 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 16/242 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81 S+ N V + G I+ S +E+ + +D +++ L S GG + Sbjct: 102 SNADNKNKKRVYIVDFDGDIKASAVDNLREEVTAILSLAREEDE---VVIRLESAGGMVH 158 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + + +VK++K +T ++AAS GY+++C ++ I AA +++GSIGV+ Q P Sbjct: 159 SYGLASSQLARVKDKKIPLTVCVDKVAASGGYMMACVADTICAAPFAILGSIGVVAQLPN 218 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K V + + K + F E K + + +++++ F V E R P Sbjct: 219 FHRLLKKNDVDFELFTAGEYKRTLTMFGENTDKGREKFTEDLETTHELFKDFVREQR--P 276 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G IW G++AK+ L+D + ++ S VDQ+ + K++ Sbjct: 277 VVDIDKVATGEIWFGSQAKEQQLVDRLTTSDDYIVS----QVDQADVYHVQYTTKKSFTE 332 Query: 261 CD 262 Sbjct: 333 RL 334 >gi|218689262|ref|YP_002397474.1| putative periplasmic protease [Escherichia coli ED1a] gi|218426826|emb|CAR07676.2| putative inner membrane peptidase [Escherichia coli ED1a] Length = 349 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 117/267 (43%), Gaps = 15/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 V D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GEVVTDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL + + ++ + L Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME---GREVVNVRYMQRKR------L 321 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWAV 290 + S E L+ + +G ++ Sbjct: 322 IDRFTGSAAESADRLLLRWWQRGQKSL 348 >gi|157157433|ref|YP_001462568.1| putative periplasmic protease [Escherichia coli E24377A] gi|300926654|ref|ZP_07142430.1| putative signal peptide peptidase SppA [Escherichia coli MS 182-1] gi|301327003|ref|ZP_07220292.1| putative signal peptide peptidase SppA [Escherichia coli MS 78-1] gi|157079463|gb|ABV19171.1| peptidase, S49 (protease IV) family [Escherichia coli E24377A] gi|300417320|gb|EFK00631.1| putative signal peptide peptidase SppA [Escherichia coli MS 182-1] gi|300846386|gb|EFK74146.1| putative signal peptide peptidase SppA [Escherichia coli MS 78-1] Length = 349 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + + + + ++ ++ ++ F V R P Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGDNTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349 >gi|323187503|gb|EFZ72812.1| peptidase family S49 family protein [Escherichia coli RN587/1] Length = 349 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 325 FTGSAAKSADRLLLRWWQRGQKPLM 349 >gi|320659187|gb|EFX26776.1| putative inner membrane peptidase [Escherichia coli O55:H7 str. USDA 5905] Length = 349 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GEVSTDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349 >gi|240849986|ref|YP_002971378.1| phage protein Gp18 [Bartonella grahamii as4aup] gi|240267109|gb|ACS50697.1| phage protein Gp18 [Bartonella grahamii as4aup] Length = 354 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 84/220 (38%), Gaps = 16/220 (7%) Query: 35 SPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 ++A I + G + + L A+++ + S GG A Sbjct: 59 QNNIAIIPVHGTLVRRGAWLGALSGLTSYEGLGASFREAIAQPDVRAVLLDIDSGGGEAG 118 Query: 82 AGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + Q + + KP+ +E A SA Y I+C+++ I A T +VGSIGV+ + Sbjct: 119 GVFDLVEEFQALSKKYDKPIWAHANEFACSAAYAIACSASQIWVARTGVVGSIGVVCAHL 178 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 +K G V K +P ++ A MQ Y FV LV+++R + Sbjct: 179 DQSRADEKHGHKWTFVFEGDHKVHGNPHEPLSDTAQIKMQADCALLYEMFVDLVAQNRRL 238 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + G +A +GL D G + ++L Sbjct: 239 NAAAIRDTK-AETFIGNQAITLGLADAQGTLAQALEALTD 277 >gi|319406644|emb|CBI80285.1| putative capsid protein of prophage [Bartonella sp. 1-1C] Length = 348 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 85/220 (38%), Gaps = 16/220 (7%) Query: 35 SPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 +VA + + G + + L A+++ + S GG A Sbjct: 59 QNNVAILPVHGTLVRRSAWLGALSGLTSYEGLSASFREAMAQPDVRAVLLDIDSGGGEAG 118 Query: 82 AGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + Q + + KP+ +E A SA Y I+C+++ I A T +VGSIGV+ + Sbjct: 119 GVFDLVEEFQALSKQYGKPIWAHANEFACSAAYAIACSASQIWVARTGVVGSIGVVCAHL 178 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 +K G V K +P + +A MQ Y FV LV+++R + Sbjct: 179 DQSYADEKQGHKWTFVFEGDHKVHGNPHEPLADEAKIKMQADCALLYEMFVDLVAKNRAM 238 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + G++A +GL D G + ++L Sbjct: 239 SAAAIRETK-AETFIGSQAITLGLADAQGTLAQALEALTD 277 >gi|313668036|ref|YP_004048320.1| secreted protease [Neisseria lactamica ST-640] gi|313005498|emb|CBN86934.1| putative secreted protease [Neisseria lactamica 020-06] Length = 350 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 110/266 (41%), Gaps = 18/266 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80 E P + + G + E+ + +D +++ L SPGG Sbjct: 94 GGKSAETQKPRLFVLDFDGDLYARAVGALRNEITAVLSIARPEDE---VLLRLESPGGVV 150 Query: 81 YAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + +++++ R +T V ++AAS GY+++C ++ IV+A ++VGS+GV+ + P Sbjct: 151 HGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFAIVGSVGVVAEVP 210 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + L K + + + + K + E K Q + ++ ++ F + VSE+R Sbjct: 211 NIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQLFKQFVSENR-- 268 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 P ++ G W G +A + LID + +++ + +++ + + Sbjct: 269 PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NKQLIEVKYQEKQS 322 Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQ 285 L + +E+ + + Sbjct: 323 LIQRIGLQAEASVENLFAKLVNRRAD 348 >gi|15801907|ref|NP_287927.1| putative periplasmic protease [Escherichia coli O157:H7 EDL933] gi|15831098|ref|NP_309871.1| periplasmic protease [Escherichia coli O157:H7 str. Sakai] gi|168751161|ref|ZP_02776183.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC4113] gi|168758357|ref|ZP_02783364.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC4401] gi|168763580|ref|ZP_02788587.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC4501] gi|168771271|ref|ZP_02796278.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC4486] gi|168775081|ref|ZP_02800088.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC4196] gi|168783775|ref|ZP_02808782.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC4076] gi|168790072|ref|ZP_02815079.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC869] gi|168801619|ref|ZP_02826626.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC508] gi|195939206|ref|ZP_03084588.1| putative periplasmic protease [Escherichia coli O157:H7 str. EC4024] gi|208811051|ref|ZP_03252884.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC4206] gi|208815761|ref|ZP_03256940.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC4045] gi|208819606|ref|ZP_03259926.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC4042] gi|209397450|ref|YP_002270326.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC4115] gi|217329117|ref|ZP_03445197.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. TW14588] gi|254792860|ref|YP_003077697.1| putative periplasmic protease [Escherichia coli O157:H7 str. TW14359] gi|261224254|ref|ZP_05938535.1| predicted inner membrane peptidase [Escherichia coli O157:H7 str. FRIK2000] gi|261257490|ref|ZP_05950023.1| predicted inner membrane peptidase [Escherichia coli O157:H7 str. FRIK966] gi|291282359|ref|YP_003499177.1| Peptidase, S49 (Protease IV) family [Escherichia coli O55:H7 str. CB9615] gi|331652312|ref|ZP_08353331.1| putative protease SohB [Escherichia coli M718] gi|12515525|gb|AAG56543.1|AE005380_2 putative protease [Escherichia coli O157:H7 str. EDL933] gi|13361309|dbj|BAB35267.1| putative protease [Escherichia coli O157:H7 str. Sakai] gi|187769295|gb|EDU33139.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC4196] gi|188014793|gb|EDU52915.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC4113] gi|188998931|gb|EDU67917.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC4076] gi|189354830|gb|EDU73249.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC4401] gi|189359971|gb|EDU78390.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC4486] gi|189366260|gb|EDU84676.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC4501] gi|189370448|gb|EDU88864.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC869] gi|189376289|gb|EDU94705.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC508] gi|208724557|gb|EDZ74265.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC4206] gi|208732409|gb|EDZ81097.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC4045] gi|208739729|gb|EDZ87411.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC4042] gi|209158850|gb|ACI36283.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC4115] gi|209771988|gb|ACI84306.1| putative protease [Escherichia coli] gi|209771990|gb|ACI84307.1| putative protease [Escherichia coli] gi|209771992|gb|ACI84308.1| putative protease [Escherichia coli] gi|209771994|gb|ACI84309.1| putative protease [Escherichia coli] gi|209771996|gb|ACI84310.1| putative protease [Escherichia coli] gi|217317556|gb|EEC25984.1| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. TW14588] gi|254592260|gb|ACT71621.1| predicted inner membrane peptidase [Escherichia coli O157:H7 str. TW14359] gi|290762232|gb|ADD56193.1| Peptidase, S49 (Protease IV) family [Escherichia coli O55:H7 str. CB9615] gi|320189977|gb|EFW64629.1| putative protease sohB [Escherichia coli O157:H7 str. EC1212] gi|320637166|gb|EFX06992.1| putative inner membrane peptidase [Escherichia coli O157:H7 str. G5101] gi|320642532|gb|EFX11780.1| putative inner membrane peptidase [Escherichia coli O157:H- str. 493-89] gi|320647885|gb|EFX16593.1| putative inner membrane peptidase [Escherichia coli O157:H- str. H 2687] gi|320653487|gb|EFX21592.1| putative inner membrane peptidase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663980|gb|EFX31167.1| putative inner membrane peptidase [Escherichia coli O157:H7 str. LSU-61] gi|326341068|gb|EGD64861.1| putative protease sohB [Escherichia coli O157:H7 str. 1125] gi|326343309|gb|EGD67076.1| putative protease sohB [Escherichia coli O157:H7 str. 1044] gi|331050590|gb|EGI22648.1| putative protease SohB [Escherichia coli M718] Length = 349 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GEVSTDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349 >gi|309793256|ref|ZP_07687683.1| putative signal peptide peptidase SppA [Escherichia coli MS 145-7] gi|308122843|gb|EFO60105.1| putative signal peptide peptidase SppA [Escherichia coli MS 145-7] Length = 354 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 98 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 157 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 158 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 217 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 218 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 275 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 276 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 329 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 330 FTGSAAESADRLLLRWWQRGQKPLM 354 >gi|16129233|ref|NP_415788.1| predicted inner membrane peptidase; multicopy suppressor of htrA(degP) [Escherichia coli str. K-12 substr. MG1655] gi|24112669|ref|NP_707179.1| putative periplasmic protease [Shigella flexneri 2a str. 301] gi|30062794|ref|NP_836965.1| putative periplasmic protease [Shigella flexneri 2a str. 2457T] gi|74312359|ref|YP_310778.1| putative periplasmic protease [Shigella sonnei Ss046] gi|89108118|ref|AP_001898.1| predicted inner membrane peptidase [Escherichia coli str. K-12 substr. W3110] gi|170080949|ref|YP_001730269.1| inner membrane peptidase [Escherichia coli str. K-12 substr. DH10B] gi|170682481|ref|YP_001743913.1| putative periplasmic protease [Escherichia coli SMS-3-5] gi|191166672|ref|ZP_03028500.1| peptidase, S49 (protease IV) family [Escherichia coli B7A] gi|193062652|ref|ZP_03043746.1| peptidase, S49 (protease IV) family [Escherichia coli E22] gi|193069952|ref|ZP_03050900.1| peptidase, S49 (protease IV) family [Escherichia coli E110019] gi|194426078|ref|ZP_03058634.1| peptidase, S49 (protease IV) family [Escherichia coli B171] gi|194436931|ref|ZP_03069030.1| peptidase, S49 (protease IV) family [Escherichia coli 101-1] gi|209918511|ref|YP_002292595.1| putative periplasmic protease [Escherichia coli SE11] gi|218553824|ref|YP_002386737.1| putative periplasmic protease [Escherichia coli IAI1] gi|218694843|ref|YP_002402510.1| putative periplasmic protease [Escherichia coli 55989] gi|238900505|ref|YP_002926301.1| putative inner membrane peptidase [Escherichia coli BW2952] gi|253773731|ref|YP_003036562.1| periplasmic protease [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161352|ref|YP_003044460.1| putative periplasmic protease [Escherichia coli B str. REL606] gi|256023020|ref|ZP_05436885.1| putative periplasmic protease [Escherichia sp. 4_1_40B] gi|260843619|ref|YP_003221397.1| putative inner membrane peptidase [Escherichia coli O103:H2 str. 12009] gi|260854969|ref|YP_003228860.1| putative inner membrane peptidase [Escherichia coli O26:H11 str. 11368] gi|260867720|ref|YP_003234122.1| putative inner membrane peptidase [Escherichia coli O111:H- str. 11128] gi|293414604|ref|ZP_06657253.1| protease sohB [Escherichia coli B185] gi|293433631|ref|ZP_06662059.1| protease sohB [Escherichia coli B088] gi|300820143|ref|ZP_07100312.1| putative signal peptide peptidase SppA [Escherichia coli MS 107-1] gi|300822566|ref|ZP_07102705.1| putative signal peptide peptidase SppA [Escherichia coli MS 119-7] gi|300919452|ref|ZP_07135953.1| putative signal peptide peptidase SppA [Escherichia coli MS 115-1] gi|300927778|ref|ZP_07143342.1| putative signal peptide peptidase SppA [Escherichia coli MS 187-1] gi|300951917|ref|ZP_07165721.1| putative signal peptide peptidase SppA [Escherichia coli MS 116-1] gi|300955862|ref|ZP_07168201.1| putative signal peptide peptidase SppA [Escherichia coli MS 175-1] gi|301022792|ref|ZP_07186634.1| putative signal peptide peptidase SppA [Escherichia coli MS 196-1] gi|301647234|ref|ZP_07247053.1| putative signal peptide peptidase SppA [Escherichia coli MS 146-1] gi|307137909|ref|ZP_07497265.1| putative periplasmic protease [Escherichia coli H736] gi|307309975|ref|ZP_07589625.1| Peptidase S49 domain protein [Escherichia coli W] gi|331641830|ref|ZP_08342965.1| putative protease SohB [Escherichia coli H736] gi|331667656|ref|ZP_08368520.1| putative protease SohB [Escherichia coli TA271] gi|331672799|ref|ZP_08373585.1| putative protease SohB [Escherichia coli TA280] gi|331677049|ref|ZP_08377745.1| putative protease SohB [Escherichia coli H591] gi|84028736|sp|P0AG14|SOHB_ECOLI RecName: Full=Probable protease sohB gi|84028737|sp|P0AG15|SOHB_SHIFL RecName: Full=Probable protease sohB gi|1742067|dbj|BAA14809.1| predicted inner membrane peptidase [Escherichia coli str. K12 substr. W3110] gi|1787527|gb|AAC74354.1| predicted inner membrane peptidase; multicopy suppressor of htrA(degP) [Escherichia coli str. K-12 substr. MG1655] gi|24051584|gb|AAN42886.1| putative protease [Shigella flexneri 2a str. 301] gi|30041042|gb|AAP16772.1| putative protease [Shigella flexneri 2a str. 2457T] gi|73855836|gb|AAZ88543.1| putative protease [Shigella sonnei Ss046] gi|169888784|gb|ACB02491.1| predicted inner membrane peptidase [Escherichia coli str. K-12 substr. DH10B] gi|170520199|gb|ACB18377.1| peptidase, S49 (protease IV) family [Escherichia coli SMS-3-5] gi|190903321|gb|EDV63042.1| peptidase, S49 (protease IV) family [Escherichia coli B7A] gi|192931774|gb|EDV84374.1| peptidase, S49 (protease IV) family [Escherichia coli E22] gi|192956705|gb|EDV87160.1| peptidase, S49 (protease IV) family [Escherichia coli E110019] gi|194416133|gb|EDX32399.1| peptidase, S49 (protease IV) family [Escherichia coli B171] gi|194423914|gb|EDX39902.1| peptidase, S49 (protease IV) family [Escherichia coli 101-1] gi|209911770|dbj|BAG76844.1| putative protease [Escherichia coli SE11] gi|218351575|emb|CAU97287.1| putative inner membrane peptidase [Escherichia coli 55989] gi|218360592|emb|CAQ98150.1| putative inner membrane peptidase [Escherichia coli IAI1] gi|238862494|gb|ACR64492.1| predicted inner membrane peptidase [Escherichia coli BW2952] gi|253324775|gb|ACT29377.1| Peptidase S49 domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973253|gb|ACT38924.1| predicted inner membrane peptidase [Escherichia coli B str. REL606] gi|253977467|gb|ACT43137.1| predicted inner membrane peptidase [Escherichia coli BL21(DE3)] gi|257753618|dbj|BAI25120.1| predicted inner membrane peptidase [Escherichia coli O26:H11 str. 11368] gi|257758766|dbj|BAI30263.1| predicted inner membrane peptidase [Escherichia coli O103:H2 str. 12009] gi|257764076|dbj|BAI35571.1| predicted inner membrane peptidase [Escherichia coli O111:H- str. 11128] gi|260449598|gb|ACX40020.1| Peptidase S49 domain protein [Escherichia coli DH1] gi|281600693|gb|ADA73677.1| putative protease sohB [Shigella flexneri 2002017] gi|291324450|gb|EFE63872.1| protease sohB [Escherichia coli B088] gi|291434662|gb|EFF07635.1| protease sohB [Escherichia coli B185] gi|299881093|gb|EFI89304.1| putative signal peptide peptidase SppA [Escherichia coli MS 196-1] gi|300317264|gb|EFJ67048.1| putative signal peptide peptidase SppA [Escherichia coli MS 175-1] gi|300413474|gb|EFJ96784.1| putative signal peptide peptidase SppA [Escherichia coli MS 115-1] gi|300448861|gb|EFK12481.1| putative signal peptide peptidase SppA [Escherichia coli MS 116-1] gi|300464171|gb|EFK27664.1| putative signal peptide peptidase SppA [Escherichia coli MS 187-1] gi|300524982|gb|EFK46051.1| putative signal peptide peptidase SppA [Escherichia coli MS 119-7] gi|300527298|gb|EFK48360.1| putative signal peptide peptidase SppA [Escherichia coli MS 107-1] gi|301074596|gb|EFK89402.1| putative signal peptide peptidase SppA [Escherichia coli MS 146-1] gi|306909693|gb|EFN40187.1| Peptidase S49 domain protein [Escherichia coli W] gi|309701570|emb|CBJ00877.1| probable protease [Escherichia coli ETEC H10407] gi|313649460|gb|EFS13891.1| peptidase family S49 family protein [Shigella flexneri 2a str. 2457T] gi|313848613|emb|CAQ31775.2| predicted inner membrane peptidase [Escherichia coli BL21(DE3)] gi|315060522|gb|ADT74849.1| predicted inner membrane peptidase [Escherichia coli W] gi|315135908|dbj|BAJ43067.1| putative periplasmic protease [Escherichia coli DH1] gi|315619350|gb|EFU99894.1| peptidase family S49 family protein [Escherichia coli 3431] gi|320199306|gb|EFW73897.1| putative protease sohB [Escherichia coli EC4100B] gi|323153297|gb|EFZ39555.1| peptidase family S49 family protein [Escherichia coli EPECa14] gi|323162368|gb|EFZ48223.1| peptidase family S49 family protein [Escherichia coli E128010] gi|323168246|gb|EFZ53931.1| peptidase family S49 family protein [Shigella sonnei 53G] gi|323172373|gb|EFZ58010.1| peptidase family S49 family protein [Escherichia coli LT-68] gi|323179777|gb|EFZ65338.1| peptidase family S49 family protein [Escherichia coli 1180] gi|323185570|gb|EFZ70931.1| peptidase family S49 family protein [Escherichia coli 1357] gi|323378915|gb|ADX51183.1| Peptidase S49 domain protein [Escherichia coli KO11] gi|323937593|gb|EGB33861.1| peptidase S49 [Escherichia coli E1520] gi|323942386|gb|EGB38556.1| peptidase S49 [Escherichia coli E482] gi|323947448|gb|EGB43452.1| peptidase S49 [Escherichia coli H120] gi|323962572|gb|EGB58152.1| peptidase S49 [Escherichia coli H489] gi|323973488|gb|EGB68674.1| peptidase S49 [Escherichia coli TA007] gi|324018879|gb|EGB88098.1| putative signal peptide peptidase SppA [Escherichia coli MS 117-3] gi|331038628|gb|EGI10848.1| putative protease SohB [Escherichia coli H736] gi|331065241|gb|EGI37136.1| putative protease SohB [Escherichia coli TA271] gi|331070020|gb|EGI41389.1| putative protease SohB [Escherichia coli TA280] gi|331075738|gb|EGI47036.1| putative protease SohB [Escherichia coli H591] gi|332342864|gb|AEE56198.1| conserved hypothetical protein [Escherichia coli UMNK88] gi|332757924|gb|EGJ88251.1| peptidase family S49 family protein [Shigella flexneri 4343-70] gi|332759393|gb|EGJ89701.1| peptidase family S49 family protein [Shigella flexneri 2747-71] gi|332760366|gb|EGJ90656.1| peptidase family S49 family protein [Shigella flexneri K-671] gi|333005723|gb|EGK25241.1| peptidase family S49 family protein [Shigella flexneri K-218] gi|333007608|gb|EGK27086.1| peptidase family S49 family protein [Shigella flexneri K-272] gi|333019108|gb|EGK38398.1| peptidase family S49 family protein [Shigella flexneri K-304] gi|333019542|gb|EGK38822.1| peptidase family S49 family protein [Shigella flexneri K-227] Length = 349 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349 >gi|332767506|gb|EGJ97700.1| peptidase S49 family protein [Shigella flexneri 2930-71] Length = 339 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 83 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 142 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 143 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 202 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 203 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 260 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 261 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 314 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 315 FTGSAAESADRLLLRWWQRGQKPLM 339 >gi|296446060|ref|ZP_06888009.1| peptidase S49 [Methylosinus trichosporium OB3b] gi|296256419|gb|EFH03497.1| peptidase S49 [Methylosinus trichosporium OB3b] Length = 439 Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 49/214 (22%), Positives = 97/214 (45%), Gaps = 14/214 (6%) Query: 35 SPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 +A + + G++ + + + D +I+ +++PGG Sbjct: 69 EDGIALVNVFGELVTRGAWLNAWSGLTSYEGFEAIMRAAAVDSRVRGIILDMNTPGGQGA 128 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++ + +RKPV+ V+ AASAGY I+ + I++ + VGSIGV++ + Sbjct: 129 GAMEAGKLVRAIADRKPVVAFVNAQAASAGYAIASGATRIISIPSGSVGSIGVVWMHVDR 188 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 +K G + + KA+ PF+ ++ A +Q + Y FVR V++ R++P Sbjct: 189 SAEHEKAGRKVTVLTEGAYKADGHPFAALDDGARGRIQSQMRELYDDFVRTVADHRDLPE 248 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 + R++ G A + GL D VG ++ + Sbjct: 249 RAVRD-TQARVYRGDRAVENGLADAVGTLDDAFA 281 >gi|300904131|ref|ZP_07122004.1| putative signal peptide peptidase SppA [Escherichia coli MS 84-1] gi|301304778|ref|ZP_07210884.1| putative signal peptide peptidase SppA [Escherichia coli MS 124-1] gi|300403896|gb|EFJ87434.1| putative signal peptide peptidase SppA [Escherichia coli MS 84-1] gi|300839899|gb|EFK67659.1| putative signal peptide peptidase SppA [Escherichia coli MS 124-1] gi|315252503|gb|EFU32471.1| putative signal peptide peptidase SppA [Escherichia coli MS 85-1] Length = 349 Score = 89.7 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349 >gi|293390340|ref|ZP_06634674.1| S49 family peptidase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950874|gb|EFE00993.1| S49 family peptidase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 352 Score = 89.7 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 113/264 (42%), Gaps = 17/264 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80 + E+ P + + +G I S+ E+ I+ ++V L SPGG Sbjct: 95 GENPAEERKPTLYVLHFKGDISASETAALREEISAIIQVA---KPTDEVLVCLESPGGVV 151 Query: 81 YAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + + ++K R +T V ++AAS GY+++C ++ IV+A +++GSIGV+ Q P Sbjct: 152 HGYGLAASQLMRLKQRNIRLTVAVDKVAASGGYMMACVADKIVSAPFAIIGSIGVVAQIP 211 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 V L K V + + + K + F E K Q Q ++ ++ F R V+++R Sbjct: 212 NVHRLLKKHDVDVDVMTAGEYKRTMTIFGENTEKGKQKFQQELEETHQLFKRFVAQNR-- 269 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 P+ ++ G W G +A + L+D + +++ ++ K Sbjct: 270 PHLDLDKVATGEHWFGQQALNLNLVDEIMTSDDLLLQAMKEKSVIGVKYAV-----KKSL 324 Query: 260 FCDLKNLSISSLLEDTIPLMKQTK 283 + + S + +K+ + Sbjct: 325 LQKVGKQAEESADNIALRWLKKNE 348 >gi|229220628|ref|NP_718503.2| putative periplasmic protease [Shewanella oneidensis MR-1] Length = 338 Score = 89.7 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 111/244 (45%), Gaps = 10/244 (4%) Query: 30 HVEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEAI 86 ++ V + +G I+ ++ L E I I + ++V++ S GG + Sbjct: 86 DEGESKGKVFVVDFKGSIDAAEVASLREEISAILTIAEKGDEVVVNVESGGGMVHGYGLA 145 Query: 87 FRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + ++ + P+ V ++AAS GY+++C +N + AA ++VGSIGV+ Q P L Sbjct: 146 SSQLDRLRQADIPLTVCVDKVAASGGYMMACVANKVYAAPFAIVGSIGVVAQLPNFNRLL 205 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K + + + K + F E + Q Q ++ ++ F VS+ R P Sbjct: 206 KKHEIDYEQHTAGDFKRTLTVFGENTDEGRQKFQQELEETHVLFKAFVSKYR--PQLDLA 263 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 ++ G W G +A ++GLID + ++V L L ++++ K++ + K Sbjct: 264 KVATGEHWYGQQAIELGLIDAISTSDDV---LMHLAGERTVYKLR-YQVRKKLADKIAHG 319 Query: 266 LSIS 269 S+S Sbjct: 320 ASLS 323 >gi|169795179|ref|YP_001712972.1| putative periplasmic protease [Acinetobacter baumannii AYE] gi|213158157|ref|YP_002320208.1| peptidase S49 [Acinetobacter baumannii AB0057] gi|215482727|ref|YP_002324925.1| Peptidase family S49 family protein [Acinetobacter baumannii AB307-0294] gi|301348388|ref|ZP_07229129.1| putative periplasmic protease [Acinetobacter baumannii AB056] gi|301512513|ref|ZP_07237750.1| putative periplasmic protease [Acinetobacter baumannii AB058] gi|301596256|ref|ZP_07241264.1| putative periplasmic protease [Acinetobacter baumannii AB059] gi|332857060|ref|ZP_08436366.1| putative signal peptide peptidase SppA [Acinetobacter baumannii 6013150] gi|332869998|ref|ZP_08438974.1| putative signal peptide peptidase SppA [Acinetobacter baumannii 6013113] gi|169148106|emb|CAM85969.1| putative protease (SohB) [Acinetobacter baumannii AYE] gi|213057317|gb|ACJ42219.1| peptidase S49 [Acinetobacter baumannii AB0057] gi|213988882|gb|ACJ59181.1| Peptidase family S49 family protein [Acinetobacter baumannii AB307-0294] gi|332726875|gb|EGJ58389.1| putative signal peptide peptidase SppA [Acinetobacter baumannii 6013150] gi|332732498|gb|EGJ63749.1| putative signal peptide peptidase SppA [Acinetobacter baumannii 6013113] Length = 320 Score = 89.7 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 108/260 (41%), Gaps = 13/260 (5%) Query: 33 DNSPHVARIAIRGQIEDS--QELIERIERISRDDSA--TALIVSLSSPGGSAYAGEAIFR 88 N+ + + +G I+ S + L E I I A ++V L SPGG + Sbjct: 54 KNNQKIFVLDFKGDIQASAVENLREEITLILATAKAGRDRVVVRLESPGGMVHGYGLAAA 113 Query: 89 AIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + ++++ + V ++AAS GY+++C +N I++A ++VGSIGV+ Q P L + Sbjct: 114 QLVRLRDAGFHLTICVDKVAASGGYMMACIANEIISAPFAVVGSIGVVAQVPNFNRLLKE 173 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 V + + K + F E P+ ++ + ++ F V + R P + Sbjct: 174 HNVDFELYTAGQYKRTVTMFGENTPEGKAKFEEELQQTHVLFKHFVEKYR--PQLNVDKV 231 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G W G +A + L+D + +E +L + N K + L Sbjct: 232 ATGEHWYGQDALDLNLVDKLQTSDEYLLALL------PQHDVYVINTRKKATLGEKLGLQ 285 Query: 268 ISSLLEDTIPLMKQTKVQGL 287 + + + IP + L Sbjct: 286 AAQMTDSLIPAVMNKVADTL 305 >gi|15597029|ref|NP_250523.1| periplasmic protease [Pseudomonas aeruginosa PAO1] gi|107101264|ref|ZP_01365182.1| hypothetical protein PaerPA_01002297 [Pseudomonas aeruginosa PACS2] gi|116049782|ref|YP_791411.1| putative periplasmic protease [Pseudomonas aeruginosa UCBPP-PA14] gi|218892214|ref|YP_002441081.1| putative periplasmic protease [Pseudomonas aeruginosa LESB58] gi|254234926|ref|ZP_04928249.1| hypothetical protein PACG_00801 [Pseudomonas aeruginosa C3719] gi|296389777|ref|ZP_06879252.1| putative periplasmic protease [Pseudomonas aeruginosa PAb1] gi|313110530|ref|ZP_07796415.1| putative protease [Pseudomonas aeruginosa 39016] gi|9947818|gb|AAG05221.1|AE004609_8 probable protease [Pseudomonas aeruginosa PAO1] gi|115585003|gb|ABJ11018.1| putative protease [Pseudomonas aeruginosa UCBPP-PA14] gi|126166857|gb|EAZ52368.1| hypothetical protein PACG_00801 [Pseudomonas aeruginosa C3719] gi|218772440|emb|CAW28222.1| probable protease [Pseudomonas aeruginosa LESB58] gi|310882917|gb|EFQ41511.1| putative protease [Pseudomonas aeruginosa 39016] Length = 341 Score = 89.7 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 107/256 (41%), Gaps = 18/256 (7%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAY 81 + + V + G I+ S E+ + +DD +++ L S GG + Sbjct: 83 AKKHPEQKSRVYVLDFDGDIKASATEQLRHEVTAVLSMAGKDDE---VVLRLESGGGMVH 139 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + +++ +T ++AAS GY+++C + I++A +++GSIGV+ Q P Sbjct: 140 GYGLAASQLARIRQAGVPLTVCVDKVAASGGYMMACIGDRILSAPFAILGSIGVVAQLPN 199 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 V L K + + + + K + F E K + Q+ ++ ++ F V+ R P Sbjct: 200 VHRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLEVTHELFKNFVAHYR--P 257 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G +W G A L+D + +E L ++ + +++ Sbjct: 258 QLNMDEIATGEVWLGQAALGKLLVDELKTSDE---YLAEQARERDVYQVQFVERKS---L 311 Query: 261 CDLKNLSISSLLEDTI 276 + L+ S +++ + Sbjct: 312 QERVGLAASVVIDRVL 327 >gi|83310271|ref|YP_420535.1| periplasmic serine protease [Magnetospirillum magneticum AMB-1] gi|82945112|dbj|BAE49976.1| Periplasmic serine protease [Magnetospirillum magneticum AMB-1] Length = 404 Score = 89.7 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 51/273 (18%), Positives = 103/273 (37%), Gaps = 16/273 (5%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQELIERI-------------ERISRDDSATALIVS 72 + S+ + +A + + G + + E + D A+++ Sbjct: 46 APSAEMAVTPDGIAIVPVIGTLVARSGYLGAASGLTAYSDIADAIEAAATDPGVRAILLD 105 Query: 73 LSSPGGSAYAGEAIFRAIQ--KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + S GG + IQ + + KP+ E A SA Y I+C ++ + +T +G Sbjct: 106 VDSSGGEVGGLFDLVDHIQAIRAQCGKPIWAIADEAALSAAYAIACTADRLYLTQTGEIG 165 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ + + G + + + K + +P ++ A +Q VD+ Y F Sbjct: 166 SIGVVAIHVDESAADAQAGRAWSFIHAGASKVDGNPHQPLSDSARATLQADVDALYGKFT 225 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 LV+E R + D ++ ++ G +A GL D VG L S+R Sbjct: 226 ALVAERRRLSPDAIRA-TEAAVYRGDQAVAAGLADKVGTLRVALADLGTSLARPSVRSPV 284 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 P + ++ + + + + + + Sbjct: 285 LSKPKETTMSEQTGDIPVLAAVPSAVEATAEIE 317 >gi|330722505|gb|EGH00330.1| putative protease sohB [gamma proteobacterium IMCC2047] Length = 356 Score = 89.7 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 108/247 (43%), Gaps = 15/247 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80 ++ D+ + + G I+ S+ E+ + I+ D ++++LSS GG Sbjct: 96 STTDDLDSKKRIYVLDFDGDIKASEVDSLREEITSVLSVINADRD--EVVLTLSSGGGMV 153 Query: 81 YAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 +A ++++K++ +T ++AAS GY+++C ++ ++AA +++GSIGV+ Q P Sbjct: 154 HAYGLASSQVKRIKDKGVALTVCVDKVAASGGYMMACVADKLLAAPFAVLGSIGVVAQLP 213 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 L K + +++ + K + F E K + + ++ ++ F V E+R Sbjct: 214 NFHRLLKKHDIDYETLTAGEYKRTLTMFGENTDKGREKFTEDLEDTHELFKEFVKENR-- 271 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 P ++ G +W G A + L+D + +E + + K+ Sbjct: 272 PQLDIDAIATGEVWFGQRALEKNLVDELKTSDEYLVDSCKDA----DVYLVSYEYKKSLQ 327 Query: 260 FCDLKNL 266 + Sbjct: 328 DRFSMGM 334 >gi|227111423|ref|ZP_03825079.1| putative periplasmic protease [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 348 Score = 89.7 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 102/247 (41%), Gaps = 12/247 (4%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATA-LIVSLSSPGGSAYA 82 + + P + + G ++ + L E I + +++ L SPGG + Sbjct: 90 AKRGEEKSVKPCLYVLDFNGSMDAGEVSSLREEISAVLAVAKPKDEVLLRLESPGGVVHG 149 Query: 83 GEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +Q+++ V ++AAS GY+++C ++ IVAA ++VGSIGV+ Q P Sbjct: 150 YGLAASQLQRLRQGGVRLTVSVDKVAASGGYMMACVADRIVAAPFAIVGSIGVVAQIPNF 209 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L + ++ + K + F E + + ++ ++ ++ F V + R P Sbjct: 210 HRLLKNKDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNVTHTLFKDFVQQMR--PS 267 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE-VWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +AK +GLID +G ++ + + + V + K Sbjct: 268 LDIDSVATGEHWFGTQAKDLGLIDAIGTSDDLLIAEMASHEVLS-----VRYTRRKRLLD 322 Query: 261 CDLKNLS 267 + Sbjct: 323 RLTGSAG 329 >gi|170768111|ref|ZP_02902564.1| peptidase, S49 family [Escherichia albertii TW07627] gi|170122877|gb|EDS91808.1| peptidase, S49 family [Escherichia albertii TW07627] Length = 349 Score = 89.7 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 113/261 (43%), Gaps = 12/261 (4%) Query: 32 EDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGEAIFR 88 + P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 97 TEGKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGVVHGYGLAAS 156 Query: 89 AIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 +Q+++++K +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P FL Sbjct: 157 QLQRLRDKKIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKN 216 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 + I+ + K + E + + ++ ++ ++ F V R P + Sbjct: 217 KDIDIELHTAGQYKRTLTFLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLDIEQV 274 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G W G +A + GL+D + ++V +L R++ + + D S Sbjct: 275 ATGEHWYGQQAVEKGLVDEINTSDDVILNLME------GREVVNVRYMQRKRLIDRFTGS 328 Query: 268 ISSLLEDTIPLMKQTKVQGLW 288 + + + Q + L Sbjct: 329 AAESADRLLLRWWQRGQKPLM 349 >gi|291281130|ref|YP_003497948.1| Head-tail preconnector protein GP5 [Escherichia coli O55:H7 str. CB9615] gi|290761003|gb|ADD54964.1| Head-tail preconnector protein GP5 [Escherichia coli O55:H7 str. CB9615] Length = 501 Score = 89.7 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADIIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQGGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|300935368|ref|ZP_07150367.1| putative signal peptide peptidase SppA [Escherichia coli MS 21-1] gi|300459398|gb|EFK22891.1| putative signal peptide peptidase SppA [Escherichia coli MS 21-1] Length = 349 Score = 89.7 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GEMATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349 >gi|306820326|ref|ZP_07453965.1| signal peptide peptidase SppA [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551655|gb|EFM39607.1| signal peptide peptidase SppA [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 294 Score = 89.3 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 89/228 (39%), Gaps = 27/228 (11%) Query: 30 HVEDNSPHVARIAIRGQIED---SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 D+ +A + + G ++ + + + I +I+ + SP G Y I Sbjct: 61 KAGDSDSKIATVTLDGTLDSFVKQDYITKSLNNIMNTPEVKGVIIRIDSPKGGIYDSVEI 120 Query: 87 FRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I+ K K PV + ++ GY ++ + + + A E +++ Sbjct: 121 SEMIKAFKTDKKVPVYAVIGSATSAGGYCVAISCDKVYAKENTII--------------- 165 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + + S +N ++ +++++Y FV V ES+ I + Sbjct: 166 ------NYTKLFEKNETELGSTDRALNVDGRSSLRSILENAYEKFVSTVMESKGIDEARV 219 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 L+DGRI+ G +A + L+D VGG + ++ + + +I + Sbjct: 220 RTLTDGRIYNGTQAHENQLVDEVGGFNDAVNAMKSQFGLSN-PEIISY 266 >gi|320659114|gb|EFX26713.1| Head-tail preconnector protein GP5 (Contains: Scaffold protein GP6 (Head protein GP6)) [Escherichia coli O55:H7 str. USDA 5905] Length = 501 Score = 89.3 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADIIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + S K + + F + + Q MQ +D++ F V+ + D Sbjct: 196 GHLAQGGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ ++ G + GL D + + + Sbjct: 256 AV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 290 >gi|219871521|ref|YP_002475896.1| putative periplasmic protease [Haemophilus parasuis SH0165] gi|219691725|gb|ACL32948.1| putative periplasmic protease, secreted serine protease [Haemophilus parasuis SH0165] Length = 351 Score = 89.3 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 108/257 (42%), Gaps = 17/257 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSA 80 + E + + +G I+ S + + + +++ L SPGG Sbjct: 93 GEENPEAEKSRLFVLNFQGDIQASG--VSALRKEVDAVLALAKPEKDQVLLKLESPGGVV 150 Query: 81 YAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + +Q++K++ +T V ++AAS GY+++C +N IV+A +++GS+GV+ Q P Sbjct: 151 HGYGLAASQLQRLKDKSIPLTVAVDKVAASGGYMMACVANKIVSAPFAVIGSVGVVAQVP 210 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + L K + + + + K + E K Q Q ++ ++ F + V++ R Sbjct: 211 NIHRLLKKHDIDVDVMTAGEYKRTVTLVGENTEKGKQKFQQELEETHRLFKQFVAQHR-- 268 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 P ++ G W G +A + L+D + +++ + + + + Sbjct: 269 PQLDIEKIATGEHWFGQQAVEFNLVDELSTSDDLILDAVK------SQDVIEVKYQQKKK 322 Query: 260 FCDLKNLSISSLLEDTI 276 I S +E+ + Sbjct: 323 LSQRVGEQIESSVENVV 339 >gi|332288220|ref|YP_004419072.1| putative periplasmic protease [Gallibacterium anatis UMN179] gi|330431116|gb|AEC16175.1| putative periplasmic protease [Gallibacterium anatis UMN179] Length = 361 Score = 89.3 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 11/233 (4%) Query: 35 SPHVARIAIRGQIEDSQ--ELIERIER--ISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 P V I +G I+ + L E I +++ L SPGG + + Sbjct: 111 KPCVYVIDFKGDIQANATNSLREEINAVLAVARPEKDEVLLRLESPGGVVHGYGFAASQL 170 Query: 91 QKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 Q+++N+ V ++AAS GY+++C ++ IVAA +++GSIGV+ Q P + L K Sbjct: 171 QRLRNKHIPLTIAVDKVAASGGYMMACVADKIVAAPFAIIGSIGVVAQVPNIHRLLKKHD 230 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 V ++ + + K + E K Q Q + ++ F + V++ R P + ++ Sbjct: 231 VDVEVMTAGEYKRTVTVLGENTEKGKQKFQQELQETHDLFKQFVAQHR--PQVEIDKVAT 288 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 G W G +A + LID V +++ + + ++ K+ Sbjct: 289 GEHWFGQQALDLALIDEVKTSDDLILAAIE----EKDVLAIKYSTKKSLVQKL 337 >gi|325122976|gb|ADY82499.1| putative protease (SohB) [Acinetobacter calcoaceticus PHEA-2] Length = 318 Score = 89.3 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 58/260 (22%), Positives = 110/260 (42%), Gaps = 13/260 (5%) Query: 33 DNSPHVARIAIRGQIEDS--QELIERIERISRDDSA--TALIVSLSSPGGSAYAGEAIFR 88 N+ + + +G I+ S + L E I I A ++V L SPGG + Sbjct: 54 KNNQKIFVLDFKGDIQASAVENLREEITLILATAKAGRDRIVVRLESPGGMVHGYGLAAA 113 Query: 89 AIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + ++++ + V ++AAS GY+++C +N I+AA ++VGSIGV+ Q P L + Sbjct: 114 QLVRLRDAGFHLTICVDKVAASGGYMMACIANEIIAAPFAIVGSIGVVAQVPNFNRLLKE 173 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 V + + K + F E P+ ++ + ++ F V + R P + Sbjct: 174 HNVDFELYTAGQYKRTVTMFGENTPEGKAKFEEELQQTHVLFKHFVEKYR--PQLNVDKV 231 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G W G +A + L+D + +E +L + N K + L Sbjct: 232 ATGEHWYGEDALDLNLVDKLQTSDEYLLALL------PQHDVYVINTRKKATLGEKLGLQ 285 Query: 268 ISSLLEDTIPLMKQTKVQGL 287 + + + IP + ++ L Sbjct: 286 AAQMADSLIPTVIGKVMESL 305 >gi|238785808|ref|ZP_04629779.1| protease sohB [Yersinia bercovieri ATCC 43970] gi|238713300|gb|EEQ05341.1| protease sohB [Yersinia bercovieri ATCC 43970] Length = 284 Score = 89.3 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 51/270 (18%), Positives = 118/270 (43%), Gaps = 18/270 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGS 79 + + V P + I +G I+ +E+ + + D +++ L SPGG Sbjct: 26 AKAGAVAAIKPCLYVIDFKGSIDAHEVTSLREEISAVLAVATAQDE---VLLRLESPGGV 82 Query: 80 AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + +++++++ +T V ++AAS GY+++C ++ I++A +++GSIGV+ Q Sbjct: 83 VHGYGLAASQLERLRHKGIRLTVAVDKVAASGGYMMACVADRIISAPFAIIGSIGVVAQI 142 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P L K + ++ + K + F E + + ++ ++ ++ F + V + R Sbjct: 143 PNFHRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVQQQR- 201 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P ++ G W G +AK+ GL+D +G +++ + + ++ + Sbjct: 202 -PSLDIDAVATGEHWFGTQAKEKGLVDAIGTSDDLL--IAEM----DNHEVIGVRYARRK 254 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S + + + Q + L Sbjct: 255 RLMDRFTGSAAESADRLLLRWWQRGEKPLL 284 >gi|311234315|gb|ADP87169.1| peptidase S49 [Desulfovibrio vulgaris RCH1] Length = 425 Score = 89.3 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 43/257 (16%), Positives = 103/257 (40%), Gaps = 11/257 (4%) Query: 38 VARIAIRGQIE--------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 VA + +RG + + + +++ D + A+++++ SPGG+ + Sbjct: 70 VAVVNMRGTLTKRGSWWTTGMEGVRTTVQQALDDPAVRAVLLAIDSPGGTVDGTRELADW 129 Query: 90 I--QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 I + KP+ + SA Y I ++ + A ++VGS+GVL+ + +L+ Sbjct: 130 IAARVADGVKPIASYADGTMCSAAYWIGGSTGRVFAPAAAIVGSVGVLWMHYDWSQYLET 189 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 G+ + + KA +P + ++ Q ++D++Y F+ VS + Sbjct: 190 NGIRATYITAGSRKAAGAPEAPLSDNDKAYFQHLIDTAYTQFLDGVSAPMGLDRANPAAW 249 Query: 208 SDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 +DG+++ EA +GL+ + +L + + + + Sbjct: 250 ADGQVFRATEALALGLVTAIVPDLAGAVAALSQEVHMDAKELAAKYPEAVAAIRNEAEEN 309 Query: 267 SISSLLEDTIPLMKQTK 283 + ++ ++T + Sbjct: 310 ARTAASKETAQAAQSVS 326 >gi|71065760|ref|YP_264487.1| putative periplasmic protease [Psychrobacter arcticus 273-4] gi|71038745|gb|AAZ19053.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Psychrobacter arcticus 273-4] Length = 324 Score = 89.3 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 46/261 (17%), Positives = 103/261 (39%), Gaps = 12/261 (4%) Query: 37 HVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + + G I+ + +E+ I ++ D ++V L S GG + + Sbjct: 67 QIFVLDFDGDIKATAVKHLREEISTLISTANKGDE---VVVRLESGGGVVHGYGLAAAQL 123 Query: 91 QKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 ++K+ +T ++AAS GY+++C ++ IVAA +++GSIGV+ Q P +L Sbjct: 124 ARLKDAGLKLTVCVDKVAASGGYMMACVADNIVAAPFAIIGSIGVVSQLPNFHKWLKNHD 183 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 V + + K + F E + K Q+ ++ ++ F V+ R + ++ Sbjct: 184 VDYEMFTAGDYKRTVTVFGENDDKDRAKYQEELEQTHELFKHFVNRYRGML--DVDKVAT 241 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 G W G +A + L+D + + ++ + + ++S Sbjct: 242 GEHWYGEDALHLNLVDKLQTSDSYLLERMENSEVYALHSRQKPTLAEKLGLSQAAEATLS 301 Query: 270 SLLEDTIPLMKQTKVQGLWAV 290 ++ + + + Sbjct: 302 MAIDKLPDALARFDFNSRLNI 322 >gi|110805274|ref|YP_688794.1| putative periplasmic protease [Shigella flexneri 5 str. 8401] gi|110614822|gb|ABF03489.1| putative protease [Shigella flexneri 5 str. 8401] Length = 296 Score = 89.3 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 40 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 99 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 100 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 159 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 160 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 217 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 218 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 271 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 272 FTGSAAESADRLLLRWWQRGQKPLM 296 >gi|331682759|ref|ZP_08383378.1| putative protease SohB [Escherichia coli H299] gi|331080390|gb|EGI51569.1| putative protease SohB [Escherichia coli H299] Length = 349 Score = 89.3 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLN 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 271 IDQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349 >gi|254282105|ref|ZP_04957073.1| putative protease SohB [gamma proteobacterium NOR51-B] gi|219678308|gb|EED34657.1| putative protease SohB [gamma proteobacterium NOR51-B] Length = 347 Score = 89.3 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 113/265 (42%), Gaps = 18/265 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81 S + P + + G + + +EL + ++D ++V L SPGG + Sbjct: 90 KSAEDARRPRLFVLNFDGDLRAAQVEQLREELSAILPEARKEDE---VLVRLESPGGMVH 146 Query: 82 AGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + +++V P+ V ++AAS GY+++C ++ I+AA +++GSIGV+ Q P Sbjct: 147 SYGLAASQLRRVVDAEIPLTVAVDKVAASGGYMMACVADKIIAAPFAVIGSIGVIAQLPN 206 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E K Q + ++ ++ F + V+E+R Sbjct: 207 FHKVLKKNDIDFELLTAGEYKRTLTMFGENTDKGRQKFLEELEDTHALFKQFVAENRKQV 266 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G +W G A V L+D + +E Q R I + + Sbjct: 267 --AIEQVATGEVWFGQRALDVQLVDQLCTSDEYLQK------QLDERDIIEVRYVGKRHW 318 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQ 285 + L+ S +E + + Q Q Sbjct: 319 QEKLGLAAESAIERALLKVWQQATQ 343 >gi|119775254|ref|YP_927994.1| putative periplasmic protease [Shewanella amazonensis SB2B] gi|119767754|gb|ABM00325.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Shewanella amazonensis SB2B] Length = 337 Score = 89.3 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 103/247 (41%), Gaps = 14/247 (5%) Query: 28 SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 + + P + +G I +E I I I+ +++++ S GG + Sbjct: 82 AEKQDKPKPRTFVLDFKGSIDAHEVASLREEISAILTIAE--KGDEVLLNVESGGGMVHG 139 Query: 83 GEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++ + P+ + ++AAS GY+++C +N I AA ++VGSIGV+ Q P Sbjct: 140 YGLAASQLDRLRQADIPLTACIDKVAASGGYMMACVANRIYAAPFAIVGSIGVVAQLPNF 199 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + + + K + F E + Q ++ ++ ++ F VS+ R P Sbjct: 200 NRLLKKHDIDYEQHTAGDFKRTLTLFGENTEEGRQKFREELEETHQLFKAFVSKYR--PE 257 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +A +GL+D + +++ + + + P K Sbjct: 258 LDLDKVATGEHWYGQQALDLGLVDSISTSDDLMLTAAKDRTLIKL----RYQPRKKLADK 313 Query: 262 DLKNLSI 268 + ++ Sbjct: 314 LAHSAAL 320 >gi|323186632|gb|EFZ71964.1| head-tail preconnector protein GP5 [Escherichia coli 1357] Length = 501 Score = 89.3 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 89/217 (41%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADTQVRGVLLDIDSPGGQATG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQLKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMGHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + + K + + F + K Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYAGSHKVDGNQFESLPAKVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + ++ ++ G + GL D + + + A Sbjct: 256 AVMG-TEAAVFEGQSGIEAGLADELINASDAISVMAA 291 >gi|157374833|ref|YP_001473433.1| putative periplasmic protease [Shewanella sediminis HAW-EB3] gi|157317207|gb|ABV36305.1| peptidase S49, N-terminal domain protein [Shewanella sediminis HAW-EB3] Length = 343 Score = 89.3 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 57/247 (23%), Positives = 105/247 (42%), Gaps = 16/247 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAG 83 E P V + +G I+ S+ E+ I D +IV++ S GG + Sbjct: 90 KEEVIEPRVFVVDFKGSIDASEVASLREEISAIIAIAESGDE---VIVNVESGGGMVHGY 146 Query: 84 EAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + +++ K P+ V ++AAS GY+++C +N I AA ++VGSIGV+ Q P Sbjct: 147 GLASSQLDRLRQAKLPLTICVDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQVPNFN 206 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 + K + + + K + F E + Q+ ++ ++ F +++ R P Sbjct: 207 RLMKKHDIDYEQHTAGDFKRTLTLFGENTDEGRAKFQEELEETHKLFKSFIAQYR--PEL 264 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 ++ G W G +A +GLID + ++V L + + KN+ Sbjct: 265 DLGKVATGEHWYGQQAIDLGLIDEIATSDDVVMKLA----LERTVIKVRYQLKKNFADKI 320 Query: 263 LKNLSIS 269 S+S Sbjct: 321 AHGASLS 327 >gi|239501142|ref|ZP_04660452.1| putative periplasmic protease [Acinetobacter baumannii AB900] Length = 320 Score = 89.3 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 108/260 (41%), Gaps = 13/260 (5%) Query: 33 DNSPHVARIAIRGQIEDS--QELIERIERISRDDSA--TALIVSLSSPGGSAYAGEAIFR 88 N+ + + +G I+ S + L E I I A ++V L SPGG + Sbjct: 54 KNNQKIFVLDFKGDIQASAVENLREEITLILATAKAGRDRIVVRLESPGGMVHGYGLAAA 113 Query: 89 AIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + ++++ + V ++AAS GY+++C +N I++A ++VGSIGV+ Q P L + Sbjct: 114 QLVRLRDAGFHLTICVDKVAASGGYMMACIANEIISAPFAVVGSIGVVAQVPNFNRLLKE 173 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 V + + K + F E P+ ++ + ++ F V + R P + Sbjct: 174 HNVDFELYTAGQYKRTVTMFGENTPEGKAKFEEELQQTHVLFKHFVEKYR--PQLNVDKV 231 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G W G +A + L+D + +E +L + N K + L Sbjct: 232 ATGEHWYGQDALDLNLVDKLQTSDEYLLALL------PQHDVYVINTRKKATLGEKLGLQ 285 Query: 268 ISSLLEDTIPLMKQTKVQGL 287 + + + IP + L Sbjct: 286 AAQMADSLIPAVMNKVADTL 305 >gi|289208920|ref|YP_003460986.1| peptidase S49 [Thioalkalivibrio sp. K90mix] gi|288944551|gb|ADC72250.1| peptidase S49 [Thioalkalivibrio sp. K90mix] Length = 356 Score = 89.3 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 17/259 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSA 80 V+ P V + G I S +E+ + +IV L SPGG Sbjct: 101 ADESVDKERPRVYVLRFTGDIRASSVDSLREEITAILTLAR--PEQDRVIVCLESPGGLV 158 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYP 139 + + +++ + +T + A++G + A + IVAA +++GSIGV+ Q P Sbjct: 159 PSYGLAASQLARLREKGLDLTVAVDRVAASGGYMMAAVADRIVAAPFAVLGSIGVVAQIP 218 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + +L++ + ++ + + K + E + + ++ +D ++ F +S R Sbjct: 219 NLHRWLERHDIDVELLTAGEYKRTLTVLGENTDEGRRKFREQLDEAHDQFKTFLSRYR-- 276 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 P ++ G W G +A ++GL D + +++ L + + +I P + Sbjct: 277 PSLDLEKVATGEHWYGEQAHQLGLADELRTSDDL---LLETSREADLFEITYTRPQR--- 330 Query: 260 FCDLKNLSISSLLEDTIPL 278 L++ S++E + Sbjct: 331 LSRRITLAMESIVERVLRS 349 >gi|169632872|ref|YP_001706608.1| putative periplasmic protease [Acinetobacter baumannii SDF] gi|184158970|ref|YP_001847309.1| putative periplasmic protease [Acinetobacter baumannii ACICU] gi|260556659|ref|ZP_05828877.1| signal peptide peptidase SppA, 36K type [Acinetobacter baumannii ATCC 19606] gi|332874751|ref|ZP_08442621.1| putative signal peptide peptidase SppA [Acinetobacter baumannii 6014059] gi|169151664|emb|CAP00454.1| putative protease (SohB) [Acinetobacter baumannii] gi|183210564|gb|ACC57962.1| Periplasmic serine protease (ClpP class) [Acinetobacter baumannii ACICU] gi|193077950|gb|ABO12862.2| putative protease (SohB) [Acinetobacter baumannii ATCC 17978] gi|260409918|gb|EEX03218.1| signal peptide peptidase SppA, 36K type [Acinetobacter baumannii ATCC 19606] gi|322508952|gb|ADX04406.1| SohB [Acinetobacter baumannii 1656-2] gi|323518938|gb|ADX93319.1| putative periplasmic protease [Acinetobacter baumannii TCDC-AB0715] gi|332737012|gb|EGJ67969.1| putative signal peptide peptidase SppA [Acinetobacter baumannii 6014059] Length = 320 Score = 89.3 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 108/260 (41%), Gaps = 13/260 (5%) Query: 33 DNSPHVARIAIRGQIEDS--QELIERIERISRDDSA--TALIVSLSSPGGSAYAGEAIFR 88 N+ + + +G I+ S + L E I I A ++V L SPGG + Sbjct: 54 KNNQKIFVLDFKGDIQASAVENLREEITLILATAKAGRDRVVVRLESPGGMVHGYGLAAA 113 Query: 89 AIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + ++++ + V ++AAS GY+++C +N I++A ++VGSIGV+ Q P L + Sbjct: 114 QLVRLRDAGFHLTICVDKVAASGGYMMACIANEIISAPFAVVGSIGVVAQVPNFNRLLKE 173 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 V + + K + F E P+ ++ + ++ F V + R P + Sbjct: 174 HNVDFELYTAGQYKRTVTMFGENTPEGKAKFEEELQQTHVLFKHFVEKYR--PQLNVDKV 231 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G W G +A + L+D + +E +L + N K + L Sbjct: 232 ATGEHWYGQDALDLNLVDKLQTSDEYLLALL------PQHDVYVINTRKKATLGEKLGLQ 285 Query: 268 ISSLLEDTIPLMKQTKVQGL 287 + + + IP + L Sbjct: 286 AAQMADSLIPAVMNKVADTL 305 >gi|301019499|ref|ZP_07183668.1| putative signal peptide peptidase SppA [Escherichia coli MS 69-1] gi|300399240|gb|EFJ82778.1| putative signal peptide peptidase SppA [Escherichia coli MS 69-1] Length = 349 Score = 89.3 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLN 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 271 IDQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349 >gi|218699982|ref|YP_002407611.1| putative periplasmic protease [Escherichia coli IAI39] gi|218369968|emb|CAR17742.1| putative inner membrane peptidase [Escherichia coli IAI39] Length = 349 Score = 89.3 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 114/265 (43%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ S +++ L SPGG + Sbjct: 93 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKSQDQVVLRLESPGGMVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 325 FTGSATESADRLLLRWWQRGQKPLM 349 >gi|261400985|ref|ZP_05987110.1| peptidase, S49 family [Neisseria lactamica ATCC 23970] gi|269209100|gb|EEZ75555.1| peptidase, S49 family [Neisseria lactamica ATCC 23970] Length = 350 Score = 89.3 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 109/266 (40%), Gaps = 18/266 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80 E P + + G + E+ + +D +++ L SPGG Sbjct: 94 GGKSAETQKPRLFVLDFDGDLYARAVGALRNEITAVLSIARPEDE---VLLRLESPGGVV 150 Query: 81 YAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + +++++ R +T V ++AAS GY+++C ++ IV+A ++VGS+GV+ + P Sbjct: 151 HGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFAIVGSVGVVAEVP 210 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + L K + + + + K + E K Q + ++ ++ F + VSE+R Sbjct: 211 NIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQLFKQFVSENR-- 268 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 P ++ G W G +A + LID + +++ + +++ + + Sbjct: 269 PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NKQLIEVKYQEKQS 322 Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQ 285 L + +E+ + Sbjct: 323 LIQRIGLQAEASIENLFAKFANRRAD 348 >gi|309378531|emb|CBX22884.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 350 Score = 89.3 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 109/266 (40%), Gaps = 18/266 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80 E P + + G + E+ + +D +++ L SPGG Sbjct: 94 GGKSAETQKPRLFVLDFDGDLYARAVGALRNEITAVLSIARPEDE---VLLRLESPGGVV 150 Query: 81 YAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + +++++ R +T V ++AAS GY+++C ++ IV+A ++VGS+GV+ + P Sbjct: 151 HGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFAIVGSVGVVAEVP 210 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + L K + + + + K + E K Q + ++ ++ F + VSE+R Sbjct: 211 NIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQLFKQFVSENR-- 268 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 P ++ G W G +A + LID + +++ + +++ + + Sbjct: 269 PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NKQLIEVKYQEKQS 322 Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQ 285 L + +E+ + Sbjct: 323 LIQRIGLQAEASIENLFAKFANRRAD 348 >gi|332091664|gb|EGI96744.1| peptidase family S49 family protein [Shigella boydii 5216-82] Length = 346 Score = 89.3 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 90 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 149 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 150 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 209 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 210 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 267 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 268 IDQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 321 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 322 FTGSAAESADRLLLRWWQRGQKPLM 346 >gi|269962018|ref|ZP_06176372.1| sohB protein, peptidase U7 family [Vibrio harveyi 1DA3] gi|269833102|gb|EEZ87207.1| sohB protein, peptidase U7 family [Vibrio harveyi 1DA3] Length = 353 Score = 89.3 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 54/263 (20%), Positives = 111/263 (42%), Gaps = 17/263 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 S PH+ + G I+ +E+ + D +++ L S GG + Sbjct: 97 GSLDSKREPHLFVLDFNGSIDAKEVGSLREEITAVLAVAREGDE---VLLRLESGGGMVH 153 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 154 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPN 213 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E KA + ++ ++ F +SE R P Sbjct: 214 FNKLLKKHDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHVLFKDFISERR--P 271 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 + ++ G W G +AK++GL+D + +++ + ++ + K Sbjct: 272 ALELEKVATGEHWFGTQAKELGLVDEISTSDDLVVAACKEKTVLAVHYV-----QKKKLA 326 Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283 L ++ + L ++ + Sbjct: 327 DKLAGVASKVADSVVLKLAERGQ 349 >gi|254428540|ref|ZP_05042247.1| Peptidase family S49 N-terminal [Alcanivorax sp. DG881] gi|196194709|gb|EDX89668.1| Peptidase family S49 N-terminal [Alcanivorax sp. DG881] Length = 345 Score = 88.9 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 113/257 (43%), Gaps = 18/257 (7%) Query: 36 PHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 P + + G ++ S +E+ ++ S+DD ++V L SPGG ++ Sbjct: 96 PRLFVLDFDGDVQASGVDHLRREITAVLQVASQDDE---VLVRLESPGGLVHSYGLASSQ 152 Query: 90 IQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 +++++N+ V ++AAS GY+++C ++ IVAA +++GSIGV+ Q P L K Sbjct: 153 LRRIRNQGIKLTIAVDQVAASGGYMMACIADRIVAAPFAIIGSIGVVAQIPNFHRLLKKN 212 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 + ++ + + K + E K Q+ ++ ++ F V ++R ++ Sbjct: 213 DIDVELMTAGEYKRTMTMLGENTEKGRAKFQEELEDTHQLFKGFVRDNR--RGLDLDKVA 270 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 G W G +AK++GL+D + +E L L D W + + S+ Sbjct: 271 TGEHWFGTQAKELGLVDEIMTSDE----LLQLRKDSQTLYQVQWEAKRK--LGEKLGFSL 324 Query: 269 SSLLEDTIPLMKQTKVQ 285 + + + Q Sbjct: 325 EATVHRVLEKFWHRGSQ 341 >gi|323491950|ref|ZP_08097119.1| putative inner membrane peptidase [Vibrio brasiliensis LMG 20546] gi|323313808|gb|EGA66903.1| putative inner membrane peptidase [Vibrio brasiliensis LMG 20546] Length = 353 Score = 88.9 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 108/261 (41%), Gaps = 14/261 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 PH+ + +G I+ +E+ + D +++ L S GG + Sbjct: 97 GELDSKREPHLFVLDFKGSIDAKEVASLREEVTAILAVAREGDE---VLLRLESGGGMVH 153 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 154 GYGLASSQLDRIKAANLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIAQLPN 213 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E KA + ++ ++ F + E R P Sbjct: 214 FNKVLKKYDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHGLFKDFIRERR--P 271 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 + ++ G W G +A K+GL+D + +++ +I ++ Sbjct: 272 ELELDKVATGEHWFGTQAHKLGLVDEIKTSDDIVVEACKDKTVLAIHYVE--KKKLTSKL 329 Query: 261 CDLKNLSISSLLEDTIPLMKQ 281 L + ++L I ++ Sbjct: 330 AGLAGEAADNVLMKLIDRGQR 350 >gi|330503146|ref|YP_004380015.1| putative periplasmic protease [Pseudomonas mendocina NK-01] gi|328917432|gb|AEB58263.1| putative periplasmic protease [Pseudomonas mendocina NK-01] Length = 339 Score = 88.9 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 110/269 (40%), Gaps = 19/269 (7%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAY 81 + P V + G I+ S E+ + +D +++ L S GG + Sbjct: 82 EKKTPPSKPRVFVLDFDGDIKASATDNLRHEVTALLSMAKAEDE---VVLRLESGGGMVH 138 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + + ++++ +T ++AAS GY+++C I++A +++GSIGV+ Q P Sbjct: 139 SYGLASSQLVRIRDAGIPLTVCVDKVAASGGYMMACIGQKILSAPFAILGSIGVVAQLPN 198 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 V L K + + + + K + F E K + Q+ +++++ F V+ R P Sbjct: 199 VHRLLKKHEIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLETTHELFKGFVARYR--P 256 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G +W G A++ L+D + ++ A + + K+ Sbjct: 257 QLDIDAIATGEVWLGMAAQERLLVDELKTSDQYLAERAAEAELFHLH----FAQKKSLQE 312 Query: 261 CDLKNLSISSLLED-TIPLMKQTKVQGLW 288 L+ S L+ + + + Q W Sbjct: 313 RV--GLAASMALDRFVLTWLSRLNQQRFW 339 >gi|325198698|gb|ADY94154.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis G2136] Length = 350 Score = 88.9 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 97/218 (44%), Gaps = 9/218 (4%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETS 127 +++ L SPGG + +++++ R I V ++AAS GY+++C ++ IV+A + Sbjct: 139 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLIVAVDKVAASGGYMMACVADKIVSAPFA 198 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 +VGS+GV+ + P + L K + + + + K + E K Q + ++ ++ Sbjct: 199 IVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 258 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F + VSE+R P ++ G W G +A + LID + +++ + + Sbjct: 259 LFKQFVSENR--PQLDIEEVATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 310 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ + + L + +E + + Sbjct: 311 QVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRAD 348 >gi|146311850|ref|YP_001176924.1| putative periplasmic protease [Enterobacter sp. 638] gi|145318726|gb|ABP60873.1| inner membrane peptidase, Serine peptidase, MEROPS family S49 [Enterobacter sp. 638] Length = 347 Score = 88.9 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 110/246 (44%), Gaps = 16/246 (6%) Query: 32 EDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 E P V + +G ++ +E+ + D +++ L SPGG + Sbjct: 95 EVTKPRVYVLDFKGSMDAHEVSSLREEVTAVLAVAKSQDQ---VVLRLESPGGVVHGYGL 151 Query: 86 IFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 +Q++++++ +T V ++AAS GY+++C ++ IVAA +++GSIGV+ Q P F Sbjct: 152 AASQLQRLRDKQIPLTVAVDKVAASGGYMMACVADKIVAAPFAILGSIGVVAQIPNFNRF 211 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L + I+ + K + E + Q ++ ++ ++H F V R P Sbjct: 212 LKNKEIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKDFV--HRMRPSLDI 269 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 ++ G W G +A++ GL+D VG +++ SL D + K Sbjct: 270 DQVATGEHWYGIQAQEKGLVDEVGTSDDLLLSLM----DGRELVGVRFTQRKRLLDRFTN 325 Query: 265 NLSISS 270 + + S+ Sbjct: 326 SAADSA 331 >gi|260577051|ref|ZP_05845030.1| peptidase S49 [Rhodobacter sp. SW2] gi|259020721|gb|EEW24038.1| peptidase S49 [Rhodobacter sp. SW2] Length = 448 Score = 88.9 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 87/208 (41%), Gaps = 14/208 (6%) Query: 36 PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A I I G + + + +++ D + + + S GG Sbjct: 82 DGIAVIEIAGTLVHRGAWIGQSSGLTSYEGIAAQLQAALADPGVRGIALDIDSFGGEVAG 141 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + I+ + +KPV V E A SAGY+++ ++ I+ T VGSIGV+ + + Sbjct: 142 AFDLADRIRAARAQKPVRAFVAEHALSAGYVLASQADRIILPRTGAVGSIGVVALHTDMS 201 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LD+ G+++ + + K + +P+ + MQ ++ F R V++ R D Sbjct: 202 GALDQKGIAVTLIHAGSHKVDANPYQPLPEAVRSRMQAELEELRLLFARTVADGRGDRLD 261 Query: 203 KTLVL-SDGRIWTGAEAKKVGLIDVVGG 229 L ++ ++ G A GL D + Sbjct: 262 VARALGTEAAVFRGEAAVHAGLADDLAD 289 >gi|156975136|ref|YP_001446043.1| putative periplasmic protease [Vibrio harveyi ATCC BAA-1116] gi|156526730|gb|ABU71816.1| hypothetical protein VIBHAR_02863 [Vibrio harveyi ATCC BAA-1116] Length = 353 Score = 88.9 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 54/263 (20%), Positives = 111/263 (42%), Gaps = 17/263 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 S PH+ + G I+ +E+ + D +++ L S GG + Sbjct: 97 GSLDSKREPHLFVLDFNGSIDAKEVASLREEVTAVLAVAREGDE---VLLRLESGGGMVH 153 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 154 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPN 213 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E KA + ++ ++ F +SE R P Sbjct: 214 FNKLLKKHDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHVLFKDFISERR--P 271 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 + ++ G W G +AK++GL+D + +++ + ++ + K Sbjct: 272 ALELEKVATGEHWFGTQAKELGLVDEISTSDDLVVAACKEKTVLAVHYV-----QKKKLA 326 Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283 L ++ + L ++ + Sbjct: 327 DKLAGVASKVADSVVLKLAERGQ 349 >gi|307546775|ref|YP_003899254.1| peptidase S49 [Halomonas elongata DSM 2581] gi|307218799|emb|CBV44069.1| peptidase S49 [Halomonas elongata DSM 2581] Length = 407 Score = 88.9 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 89/218 (40%), Gaps = 19/218 (8%) Query: 36 PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 VA I I G + ++ L++ I+ D S +++++ SPGG A Sbjct: 55 DGVAVIPITGPVFRYANLFTEISGAVSTEMLVKDIQTALDDPSIQGIVLNIDSPGGEATG 114 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + I + +KP+ ASA Y + A++ ++ +T+ +GS+GV+ + Sbjct: 115 INELSDLIYNARGQKPIKAYAGGQMASALYWVGSAADEVIVDDTAQLGSVGVVLSLRKRE 174 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 S + V S+ P P +Q D F+ V+ +R++P D Sbjct: 175 DR--PGEKSYEIVSSNAPNKRPDP---ETEAGRAQLQARTDELAAVFLDKVARNRDLPRD 229 Query: 203 KTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + G + TGA A + G+ D +G E V L Sbjct: 230 EVNDRFRQGGVATGALAVEAGMADRLGSLESVIAELAG 267 >gi|46445858|ref|YP_007223.1| putative proteinase IV [Candidatus Protochlamydia amoebophila UWE25] gi|46399499|emb|CAF22948.1| putative proteinase IV [Candidatus Protochlamydia amoebophila UWE25] Length = 345 Score = 88.9 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 68/261 (26%), Positives = 112/261 (42%), Gaps = 15/261 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDS--------QELIERIERISRDDSATALIVSLSSPGGSA 80 V ++P + ++ I G I Q+LIE E +++ AL++ +++PGG+ Sbjct: 62 EVVASDAPVILQLNIDGIIGTENLNTQTIRQQLIESREGAYKNNRVKALLLYINTPGGTV 121 Query: 81 YAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + IF+ + K + PV + + AS G I+ A++ I A++ SL+GS+GV+ Sbjct: 122 ADADGIFQLLADYKKKYQVPVYAYIDGLCASGGMYIALAADKIYASDISLIGSVGVIAPT 181 Query: 139 PYV-KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 LDKLGV ++ + K +P P + ++D Y FV LVS R Sbjct: 182 FMNVTKLLDKLGVETLTISAGKDKDAMNPLRPWKPGEEDNYRQIIDYYYTHFVDLVSSHR 241 Query: 198 NI-PYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIKDWNPP 255 +K + ++ A + G IDV G E + L + Sbjct: 242 PALSKEKLVKDYGAHVFPAPNAVEKGYIDVSGATISETLKELLMTIGIDNDHYQVIRLEN 301 Query: 256 KNYWFCDLKNLSISSLLEDTI 276 K +W S SSLL TI Sbjct: 302 KGWWKGLF--SSQSSLLNGTI 320 >gi|258543792|ref|ZP_05704026.1| S49 (protease IV) family peptidase [Cardiobacterium hominis ATCC 15826] gi|258520967|gb|EEV89826.1| S49 (protease IV) family peptidase [Cardiobacterium hominis ATCC 15826] Length = 332 Score = 88.9 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 49/260 (18%), Positives = 106/260 (40%), Gaps = 17/260 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGS 79 + + P + + G IE S +++ I+ +D +++ L S GG Sbjct: 80 AAKHDSAQHKPRIFVLDFDGDIEASAVAQLREQISAVIQVAGTEDR---VLLRLESGGGL 136 Query: 80 AYAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 +A + +++ R+ + V ++AAS GY+++C +N ++AA +++GS+GV+ Sbjct: 137 VHAYGLAASQLARLRERQIPLVIAVDKVAASGGYMMACLANELIAAPFAILGSVGVIGAL 196 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P L + + + + K + F E Q + + ++ F + R Sbjct: 197 PNFNELLKQHRIRYEEHTAGEHKRSLTLFGENTDADRQQFRHELAVTHDLFKNHIHRYR- 255 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P ++ G W GA+A + LID +G ++ L S + ++ Sbjct: 256 -PQLDIDAIATGETWYGAQAVENHLIDAIGTSDDYI-----LAHLHSHQLVQLEEHVPER 309 Query: 259 WFCDLKNLSISSLLEDTIPL 278 W +K+ + + + Sbjct: 310 WLDKIKHRFLGKIQARPLKA 329 >gi|218704795|ref|YP_002412314.1| putative periplasmic protease [Escherichia coli UMN026] gi|293404813|ref|ZP_06648805.1| periplasmic protease [Escherichia coli FVEC1412] gi|298380454|ref|ZP_06990053.1| protease sohB [Escherichia coli FVEC1302] gi|300897325|ref|ZP_07115756.1| putative signal peptide peptidase SppA [Escherichia coli MS 198-1] gi|331662684|ref|ZP_08363607.1| putative protease SohB [Escherichia coli TA143] gi|218431892|emb|CAR12777.1| putative inner membrane peptidase [Escherichia coli UMN026] gi|291427021|gb|EFF00048.1| periplasmic protease [Escherichia coli FVEC1412] gi|298277896|gb|EFI19410.1| protease sohB [Escherichia coli FVEC1302] gi|300358904|gb|EFJ74774.1| putative signal peptide peptidase SppA [Escherichia coli MS 198-1] gi|331061106|gb|EGI33070.1| putative protease SohB [Escherichia coli TA143] Length = 349 Score = 88.9 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITSVLAAFKPQDQVVLRLESPGGMVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLN 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 271 IDQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349 >gi|46580575|ref|YP_011383.1| minor capsid protein C [Desulfovibrio vulgaris str. Hildenborough] gi|46449994|gb|AAS96643.1| minor capsid protein C [Desulfovibrio vulgaris str. Hildenborough] Length = 406 Score = 88.9 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 43/257 (16%), Positives = 103/257 (40%), Gaps = 11/257 (4%) Query: 38 VARIAIRGQIE--------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 VA + +RG + + + +++ D + A+++++ SPGG+ + Sbjct: 51 VAVVNMRGTLTKRGSWWTTGMEGVRTTVQQALDDPAVRAVLLAIDSPGGTVDGTRELADW 110 Query: 90 I--QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 I + KP+ + SA Y I ++ + A ++VGS+GVL+ + +L+ Sbjct: 111 IAARVADGVKPIASYADGTMCSAAYWIGGSTGRVFAPAAAIVGSVGVLWMHYDWSQYLET 170 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 G+ + + KA +P + ++ Q ++D++Y F+ VS + Sbjct: 171 NGIRATYITAGSRKAAGAPEAPLSDNDKAYFQHLIDTAYTQFLDGVSAPMGLDRANPAAW 230 Query: 208 SDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 +DG+++ EA +GL+ + +L + + + + Sbjct: 231 ADGQVFRATEALALGLVTAIVPDLAGAVAALSQEVHMDAKELAAKYPEAVAAIRNEAEEN 290 Query: 267 SISSLLEDTIPLMKQTK 283 + ++ ++T + Sbjct: 291 ARTAASKETAQAAQSVS 307 >gi|163867606|ref|YP_001608805.1| putative capsid protein of prophage [Bartonella tribocorum CIP 105476] gi|161017252|emb|CAK00810.1| putative capsid protein of prophage [Bartonella tribocorum CIP 105476] Length = 348 Score = 88.9 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 85/220 (38%), Gaps = 16/220 (7%) Query: 35 SPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 +VA I + G + + L A+++ + S GG A Sbjct: 59 QNNVAIIPVHGTLVRRGAWLGALSGLTSYEGLRASFREAIAQPDVNAVLLDIDSGGGEAG 118 Query: 82 AGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + Q + + KP+ +E A SA Y I+CA++ I T +VGSIGV+ + Sbjct: 119 GIFDLVEEFQTLSKQYAKPIWAHANEFACSAAYAIACAASQIWITRTGVVGSIGVVCAHL 178 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 +K G+ V K +P ++ A MQ Y FV V+++R + Sbjct: 179 DQSRADEKQGLKWTFVFEGDHKTHGNPHEPLSDTAQIKMQADCTLLYEMFVDWVAKNRPL 238 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 D + G +A ++GL D G + ++L Sbjct: 239 SADAIRDTK-AETFIGTQALELGLADAQGTLAQALEALTD 277 >gi|114047041|ref|YP_737591.1| putative periplasmic protease [Shewanella sp. MR-7] gi|113888483|gb|ABI42534.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Shewanella sp. MR-7] Length = 338 Score = 88.9 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 109/237 (45%), Gaps = 10/237 (4%) Query: 37 HVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 V I +G I+ ++ L E I I + ++V++ S GG + + ++ Sbjct: 93 KVFVIDFKGSIDAAEVASLREEISAILTIAEKGDEVVVNVESGGGMVHGYGLASSQLDRL 152 Query: 94 -KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 + P+ V ++AAS GY+++C +N + AA ++VGSIGV+ Q P L K + Sbjct: 153 RQAEIPLTICVDKVAASGGYMMACVANKVYAAPFAIVGSIGVVAQLPNFNRLLKKHEIDY 212 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 + + K + F E + Q Q ++ ++ F VS+ R P ++ G Sbjct: 213 EQHTAGDFKRTLTVFGENTDEGRQKFQQELEETHVLFKAFVSKYR--PQLDLAKVATGEH 270 Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 W G +A ++GLID + ++V L L ++++ K++ + K S+S Sbjct: 271 WYGQQAIELGLIDAISTSDDV---LMQLAGERTVYKLR-YQVRKKLADKIAHGASLS 323 >gi|126459873|ref|YP_001056151.1| peptidase S49 [Pyrobaculum calidifontis JCM 11548] gi|126249594|gb|ABO08685.1| peptidase S49 [Pyrobaculum calidifontis JCM 11548] Length = 522 Score = 88.5 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 52/273 (19%), Positives = 109/273 (39%), Gaps = 25/273 (9%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAY 81 Y + P + + I+ L +R+ +S+ +++ ++SPGG+ Sbjct: 21 YLALHPPAPAPPPKIVVATLDFVIQSPDAGALAQRLVELSQRGDVAGVVLVINSPGGTVS 80 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 EA++ ++ + K + +AAS Y ++ A++ I A +S VGSIGV+ Sbjct: 81 DTEALYATLRGLGKPKYAVVYG--LAASGAYYVAAAADKIYATPSSWVGSIGVIAVIWPD 138 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-NIP 200 + D + P+K + + V+ + FV+ V+E R Sbjct: 139 EYLYD---APDYVYTTGPLKYYGM--------DLTSFYNAVEEVRNNFVKAVAEGRRGRL 187 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 L ++T ++A ++GL+D +GG + + + + + ++ P N Sbjct: 188 RVNATELETAALYTASQALEMGLVDKIGGVPDAVRDMAQELGLREYQ--VEYLKPLNATQ 245 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 + S L ++ PL ++ +W P Sbjct: 246 GPASQRASLSALLNSTPL-------PIFYMWPP 271 >gi|307545278|ref|YP_003897757.1| inner membrane peptidase [Halomonas elongata DSM 2581] gi|307217302|emb|CBV42572.1| predicted inner membrane peptidase [Halomonas elongata DSM 2581] Length = 343 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 59/274 (21%), Positives = 114/274 (41%), Gaps = 21/274 (7%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGS 79 S + P V + G ++ S +E+ ++ + D ++V L S GG Sbjct: 82 SRGKQGDAPRPTVWVLDFHGDLKASATGKLAEEVSAVLDAAEQGDE---VVVRLESAGGL 138 Query: 80 AYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 +A + +++ T ++AAS GYL++C ++ + AA +++GSIGV+ Q Sbjct: 139 VHAYGHAAAEMDRLRQAGLSTTVCVDKVAASGGYLMACCADRLRAAPFAVLGSIGVVAQL 198 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P V L + + ++ + + K + F E + Q +D+ + F R V+E R Sbjct: 199 PNVHRLLKRHDIDVEVLTAGHYKRTLTVFGENTEEGRQKFLAELDTVHDLFKRYVAERR- 257 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P ++ G W G EA GLID +G E + ++ + Sbjct: 258 -PGLDIEAVATGEAWHGTEALPRGLIDEIGTSEAYLAERM------NDARVIALSIQARR 310 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + LS+S +E ++ + + ++W Sbjct: 311 GLAERLGLSVSQGIERSVERGVEA-LDA--SLWQ 341 >gi|121635245|ref|YP_975490.1| putative periplasmic protease [Neisseria meningitidis FAM18] gi|218768556|ref|YP_002343068.1| putative periplasmic protease [Neisseria meningitidis Z2491] gi|120866951|emb|CAM10711.1| putative secreted protease [Neisseria meningitidis FAM18] gi|121052564|emb|CAM08904.1| putative secreted protease [Neisseria meningitidis Z2491] gi|325130673|gb|EGC53414.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis OX99.30304] gi|325134610|gb|EGC57250.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis M13399] gi|325136747|gb|EGC59347.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis M0579] gi|325138613|gb|EGC61172.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis ES14902] gi|325144853|gb|EGC67141.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis M01-240013] gi|325201738|gb|ADY97192.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis M01-240149] gi|325205678|gb|ADZ01131.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis M04-240196] gi|325208518|gb|ADZ03970.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis NZ-05/33] Length = 350 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 98/218 (44%), Gaps = 9/218 (4%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127 +++ L SPGG + +++++ R +T V ++AAS GY+++C ++ IV+A + Sbjct: 139 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 198 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 +VGS+GV+ + P + L K + + + + K + E K Q + ++ ++ Sbjct: 199 IVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 258 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F + VSE+R P ++ G W G +A + LID + +++ + + Sbjct: 259 LFKQFVSENR--PQLDIEEVATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 310 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ + + L + +E + + Sbjct: 311 QVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRAD 348 >gi|239998326|ref|ZP_04718250.1| putative periplasmic protease [Neisseria gonorrhoeae 35/02] gi|240014504|ref|ZP_04721417.1| putative periplasmic protease [Neisseria gonorrhoeae DGI18] gi|240079709|ref|ZP_04724252.1| putative periplasmic protease [Neisseria gonorrhoeae FA19] gi|240113719|ref|ZP_04728209.1| putative periplasmic protease [Neisseria gonorrhoeae MS11] gi|240116462|ref|ZP_04730524.1| putative periplasmic protease [Neisseria gonorrhoeae PID18] gi|240121026|ref|ZP_04733988.1| putative periplasmic protease [Neisseria gonorrhoeae PID24-1] gi|240122343|ref|ZP_04735299.1| putative periplasmic protease [Neisseria gonorrhoeae PID332] gi|240125076|ref|ZP_04737962.1| putative periplasmic protease [Neisseria gonorrhoeae SK-92-679] gi|240127057|ref|ZP_04739718.1| putative periplasmic protease [Neisseria gonorrhoeae SK-93-1035] gi|254494474|ref|ZP_05107645.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|260441683|ref|ZP_05795499.1| putative periplasmic protease [Neisseria gonorrhoeae DGI2] gi|268599789|ref|ZP_06133956.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268602133|ref|ZP_06136300.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268680929|ref|ZP_06147791.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268683671|ref|ZP_06150533.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268685412|ref|ZP_06152274.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|226513514|gb|EEH62859.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268583920|gb|EEZ48596.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268586264|gb|EEZ50940.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268621213|gb|EEZ53613.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268623955|gb|EEZ56355.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268625696|gb|EEZ58096.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] Length = 350 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 98/218 (44%), Gaps = 9/218 (4%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127 +++ L SPGG + +++++ R +T V ++AAS GY+++C ++ IV+A + Sbjct: 139 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 198 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 ++GS+GV+ + P + L K + + + + K + E K Q + ++ ++ Sbjct: 199 IIGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 258 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F + VSE+R P ++ G W G +A + LID + +++ + + Sbjct: 259 LFKQFVSENR--PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 310 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ + + L + +E + + Sbjct: 311 QVIEVKYQEKRSLIQRIGLQAEASVEKLFAKLVNRRAD 348 >gi|294340242|emb|CAZ88614.1| putative phage minor capsid protein C [Thiomonas sp. 3As] Length = 307 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 16/216 (7%) Query: 38 VARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 VA I + G + + +++ D + + + SPGGS Sbjct: 64 VAVIPVHGALVPRGNTMTACMGTSSYDRIGAQLDAALADPEVRQIALDIDSPGGSVQGAF 123 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + I + I + ++A YL++ A + + + T VGS+GV+ + + Sbjct: 124 ELAGKIAQATKPTTAIVNFNALSA--AYLLASACDSVSVSSTGAVGSVGVVAMHRDLSGA 181 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 DK GV I +V K + + ++ A Q +Q VD ++ FV VS RN+P D+ Sbjct: 182 NDKAGVKITAVYRGDKKLHGASHAPLSEVAQQELQAQVDDAFDQFVAAVSTHRNLPADRV 241 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 + L G ++ GA+A GL D + +E L L Sbjct: 242 VGLQAG-VFHGADALSQGLADQMETPQEAIDRLAGL 276 >gi|293409659|ref|ZP_06653235.1| protease sohB [Escherichia coli B354] gi|291470127|gb|EFF12611.1| protease sohB [Escherichia coli B354] Length = 349 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 55/259 (21%), Positives = 112/259 (43%), Gaps = 12/259 (4%) Query: 34 NSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + P V + +G ++ + L E I ++ +++ L SPGG + + Sbjct: 99 SKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYGLAASQL 158 Query: 91 QKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P FL Sbjct: 159 QRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKD 218 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + I+ + K + E + + ++ ++ ++ F V R P ++ Sbjct: 219 IDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLDIEQVAT 276 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 G W G +A + GL+D + +EV SL R++ + + D S + Sbjct: 277 GEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDRFTGSAA 330 Query: 270 SLLEDTIPLMKQTKVQGLW 288 + + Q + L Sbjct: 331 ESADRLLLRWWQRGQKPLM 349 >gi|15835395|ref|NP_297154.1| protease IV, putative [Chlamydia muridarum Nigg] gi|270285572|ref|ZP_06194966.1| protease IV, putative [Chlamydia muridarum Nigg] gi|270289583|ref|ZP_06195885.1| protease IV, putative [Chlamydia muridarum Weiss] gi|301336969|ref|ZP_07225171.1| protease IV, putative [Chlamydia muridarum MopnTet14] gi|7190808|gb|AAF39584.1| protease IV, putative [Chlamydia muridarum Nigg] Length = 332 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 71/309 (22%), Positives = 129/309 (41%), Gaps = 23/309 (7%) Query: 4 VLKKIKTRYVMLSLVTLT---VVYFSWSS------HVEDNSPHVARIAIRGQIEDS---- 50 VL + +++LSL + ++ S + + SP +A I I I + Sbjct: 22 VLGAMSFIFILLSLCVMGKDSALFVSLPNAQGVVQELGKTSPILAIIEINDAIMANSGSA 81 Query: 51 ---QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHE 105 Q ++ + L++ + PGG + + + A+ K + PV V Sbjct: 82 KRLQSTLQSLSEAPYKGRVKGLLIKMDCPGGEIFEIDRMSAALSFWKQKLGIPVHVFVSG 141 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVL-FQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 + AS GY ++C ++ I TSL+GSIGV Y +K L +LGV + + KA Sbjct: 142 LCASGGYYVACIADRIGTTSTSLIGSIGVRSGPYFNIKEGLQRLGVETAILTAGDDKAPL 201 Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI-PYDKTLVLSDGRIWTGAEAKKVGL 223 +PFS + Q +VD+ Y FV V + R+ + + R++ +A + GL Sbjct: 202 NPFSPWTEEEYAERQGIVDALYEQFVDHVVKHRSQLSKEHVTQVLGARVFIAKQALEEGL 261 Query: 224 IDVV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282 +D+V QE+ L + + ++ + ++ LS S L+ + L Sbjct: 262 VDIVNQTQEQALDDLAGVCGVKEDYRVIGLS-SGHFLRRFSSCLSNSPLVTGKLQLAV-L 319 Query: 283 KVQGLWAVW 291 Q ++W Sbjct: 320 PDQQQKSLW 328 >gi|332186917|ref|ZP_08388658.1| peptidase S49 family protein [Sphingomonas sp. S17] gi|332012927|gb|EGI54991.1| peptidase S49 family protein [Sphingomonas sp. S17] Length = 290 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 1/183 (0%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 + +R+ D A+++++ SPGG + AI +V+ KPVI SA Y Sbjct: 82 IADRVREAGADAKVGAIVLAIRSPGGYVWGCAEAGDAIYEVRQSKPVIAVADPYCFSAAY 141 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 ++ + + VGS+GV + V F DK+G+ + S K P++ ++ Sbjct: 142 WLATQGSGFYCTTSGEVGSVGVRSGHTDVSGFEDKIGMKTTLIASHEDKIAGHPYAPLDD 201 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVVGGQE 231 A +Q VD S F ++ R I + + G+ ++ +A G ID V Sbjct: 202 AARAEIQASVDESNAAFAAAIARGRGIKASEVAGIHGTGKTFSAKQALANGAIDGVATLR 261 Query: 232 EVW 234 +V Sbjct: 262 DVV 264 >gi|254805356|ref|YP_003083577.1| putative protease SohB [Neisseria meningitidis alpha14] gi|254668898|emb|CBA07061.1| putative protease SohB [Neisseria meningitidis alpha14] gi|261392171|emb|CAX49681.1| putative peptidase [Neisseria meningitidis 8013] gi|325128615|gb|EGC51484.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis N1568] gi|325204563|gb|ADZ00017.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis M01-240355] Length = 350 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 98/218 (44%), Gaps = 9/218 (4%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127 +++ L SPGG + +++++ R +T V ++AAS GY+++C ++ IV+A + Sbjct: 139 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 198 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 +VGS+GV+ + P + L K + + + + K + E K Q + ++ ++ Sbjct: 199 IVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 258 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F + VSE+R P ++ G W G +A + LID + +++ + + Sbjct: 259 LFKQFVSENR--PQLDIEEVATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 310 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ + + L + +E + + Sbjct: 311 QVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRAD 348 >gi|312882440|ref|ZP_07742181.1| putative periplasmic protease [Vibrio caribbenthicus ATCC BAA-2122] gi|309369840|gb|EFP97351.1| putative periplasmic protease [Vibrio caribbenthicus ATCC BAA-2122] Length = 353 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 113/257 (43%), Gaps = 12/257 (4%) Query: 31 VEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 ED +PH+ + +G I +E I I +++D +++ L S GG + Sbjct: 100 AEDRAPHLFVLDFKGSIDAKEVSSLREEITAILAVAKDSD--EVLLRLESGGGMVHGYGL 157 Query: 86 IFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 158 ASSQLDRIKAANIPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIAQMPNFNKV 217 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K + + + + K + F E KA + ++ ++ F + + R P + Sbjct: 218 LKKHDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHGLFKDFIRQRR--PDLEL 275 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 ++ G W G +A ++GL+D + +++ ++ ++ + Sbjct: 276 EKVATGEHWFGTQAHELGLVDEIKTSDDLVVEACKDKTVLAVHYVE--KKKLTSKLAGIA 333 Query: 265 NLSISSLLEDTIPLMKQ 281 + ++L I ++ Sbjct: 334 GEAADNVLMKLIDRGQR 350 >gi|254507619|ref|ZP_05119752.1| peptidase S49 [Vibrio parahaemolyticus 16] gi|219549506|gb|EED26498.1| peptidase S49 [Vibrio parahaemolyticus 16] Length = 349 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 109/263 (41%), Gaps = 17/263 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 PH+ + +G I+ +E+ + D +++ L S GG + Sbjct: 93 GDLDSKREPHLFVLDFKGSIDAKEVASLREEVTAILAVAREGDE---VLLRLESGGGMVH 149 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 150 GYGLASSQLDRIKAANLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIAQLPN 209 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E KA + + ++ ++ F + E R P Sbjct: 210 FNKVLKKYDIEYEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHGLFKDFIRERR--P 267 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 + ++ G W G +A +GL+D + +++ +I + K Sbjct: 268 ELELDKVATGEHWFGTQAHDLGLVDEIKTSDDLVVEACKDKTVLAIHYV-----EKKKLT 322 Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283 L ++ + + L+ + + Sbjct: 323 SKLAGMAGEAADNVLMKLIDRGQ 345 >gi|238751909|ref|ZP_04613395.1| protease sohB [Yersinia rohdei ATCC 43380] gi|238709889|gb|EEQ02121.1| protease sohB [Yersinia rohdei ATCC 43380] Length = 348 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 115/261 (44%), Gaps = 18/261 (6%) Query: 35 SPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 P + I +G I+ +E+ + + D +++ L SPGG + Sbjct: 99 KPCLYVIDFKGSIDAHEVTSLREEISAVLAVATAQDE---VLLRLESPGGVVHGYGLAAS 155 Query: 89 AIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 +++++++ +T V ++AAS GY+++C ++ I++A +++GSIGV+ Q P L K Sbjct: 156 QLERLRHKGIRLTVAVDKVAASGGYMMACVADRIISAPFAIIGSIGVVAQIPNFHRLLKK 215 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 + ++ + K + F E + + ++ ++ ++ F + V + R P + Sbjct: 216 NDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHVLFKQFVQQQR--PSLDIDAV 273 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G W G +AK+ GL+D +G +++ + + ++ + D S Sbjct: 274 ATGEHWFGTQAKEKGLVDAIGTSDDLL--IAEM----DNHEVIGVRYSRRKRLMDRFTGS 327 Query: 268 ISSLLEDTIPLMKQTKVQGLW 288 + + + Q + L Sbjct: 328 AAESADRLLLRWWQRGEKPLL 348 >gi|268594186|ref|ZP_06128353.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268595855|ref|ZP_06130022.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268547575|gb|EEZ42993.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268549643|gb|EEZ44662.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] Length = 359 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 98/218 (44%), Gaps = 9/218 (4%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127 +++ L SPGG + +++++ R +T V ++AAS GY+++C ++ IV+A + Sbjct: 148 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 207 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 ++GS+GV+ + P + L K + + + + K + E K Q + ++ ++ Sbjct: 208 IIGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 267 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F + VSE+R P ++ G W G +A + LID + +++ + + Sbjct: 268 LFKQFVSENR--PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 319 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ + + L + +E + + Sbjct: 320 QVIEVKYQEKRSLIQRIGLQAEASVEKLFAKLVNRRAD 357 >gi|85059384|ref|YP_455086.1| putative periplasmic protease [Sodalis glossinidius str. 'morsitans'] gi|84779904|dbj|BAE74681.1| putative protease [Sodalis glossinidius str. 'morsitans'] Length = 348 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 52/256 (20%), Positives = 111/256 (43%), Gaps = 17/256 (6%) Query: 39 ARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 + G ++ + E+ + D +++ L SPGG + +Q+ Sbjct: 103 YVLDFTGSMDAGEVSSLREEITAVLSVAKSGDE---VLLRLESPGGVVHGYGLAASQLQR 159 Query: 93 VKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 ++ + +T V ++AAS GY+++C ++ IVAA +++GSIGV+ Q P L + + Sbjct: 160 LREKGIPLTVAVDKVAASGGYMMACVADRIVAAPFAIIGSIGVVAQIPNFHRLLKRNDID 219 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 ++ + K + F E +P + Q ++ ++ F V R P ++ G Sbjct: 220 MELHTAGAYKRTLTLFGENSPAGREKFQQELNETHQLFKSFVQRMR--PTLDVDTVATGE 277 Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 W G +A+ +GL+D +G +++ L + ++ P W + + SL Sbjct: 278 HWYGEQAQHLGLVDAIGTSDDL---LIEQLARHEVISVRFSRPK--CWMSRFTDSAALSL 332 Query: 272 LEDTIPLMKQTKVQGL 287 + + ++ + L Sbjct: 333 EQRLMRYWQRAQKPLL 348 >gi|226944831|ref|YP_002799904.1| putative periplasmic protease [Azotobacter vinelandii DJ] gi|226719758|gb|ACO78929.1| Peptidase, S49 family [Azotobacter vinelandii DJ] Length = 342 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 105/254 (41%), Gaps = 18/254 (7%) Query: 30 HVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAG 83 P + + G I S E+ + +D +++ L S GG ++ Sbjct: 87 KEGKTKPRLFVLDFDGDIRASATDKLRHEVTAVLSMAKPEDE---VVLRLESGGGLVHSY 143 Query: 84 EAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + +++ +T ++AAS GY+++C + I++A +++GSIGV+ Q P V Sbjct: 144 GLAASQLVRIRQAGVPLTVCVDKVAASGGYMMACIGDRILSAPFAILGSIGVVAQLPNVH 203 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + + + + + K + F E K + Q+ +++++ F V+ R P Sbjct: 204 RLLKRHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLETTHELFKNFVARYR--PQL 261 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 ++ G IW G A + L+D + +E L A + ++ + + + Sbjct: 262 TIDEIATGEIWLGQSALEKQLVDELMTSDE---YLAAKAGSAELFQL---HYAERKSLQE 315 Query: 263 LKNLSISSLLEDTI 276 L + ++ + Sbjct: 316 RFGLGAALAVDRVL 329 >gi|212712418|ref|ZP_03320546.1| hypothetical protein PROVALCAL_03507 [Providencia alcalifaciens DSM 30120] gi|212684941|gb|EEB44469.1| hypothetical protein PROVALCAL_03507 [Providencia alcalifaciens DSM 30120] Length = 483 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 85/214 (39%), Gaps = 14/214 (6%) Query: 38 VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 +A + + G + + +++ D +++ + SPGG A Sbjct: 68 IAVLPVSGTLVHKLGAMRPFSGMTGYDGITAFLKQAVTDPEVKGILLDIDSPGGQASGAF 127 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + ++ KP+ H+MA SA L++ A + + +T+ +GSIGV+ + + Sbjct: 128 DCADMVARLGQEKPIWALCHDMACSAAMLLASACSRRLVTQTAKIGSIGVMMAHANREQQ 187 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L + GV I + S K + + F + + Q +D + FV+ V+ +P Sbjct: 188 LAQTGVDITLIYSGAHKVDGNAFQALPERVRADFQRQIDEARTLFVQKVAGYLGVPESTI 247 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 ++ + G VGL D + + + Sbjct: 248 RE-TEAATYQGQAGIDVGLADDMVNAADAVDVMA 280 >gi|163867766|ref|YP_001608968.1| putative capsid protein of prophage [Bartonella tribocorum CIP 105476] gi|161017415|emb|CAK00973.1| putative capsid protein of prophage [Bartonella tribocorum CIP 105476] Length = 349 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 85/220 (38%), Gaps = 16/220 (7%) Query: 35 SPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 +VA I + G + + L A+++ + S GG A Sbjct: 59 QNNVAIIPVHGTLVRRGAWLGALSGLTSYEGLRASFREAIAQPDVNAVLLDIDSGGGEAG 118 Query: 82 AGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + Q + + KP+ +E A SA Y I+CA++ I T +VGSIGV+ + Sbjct: 119 GIFDLVEEFQTLSKQYAKPIWAHANEFACSAAYAIACAASQIWITRTGVVGSIGVVCAHL 178 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 +K G+ V K +P ++ A MQ Y FV V+++R + Sbjct: 179 DQSRADEKQGLKWTFVFEGDHKTHGNPHEPLSDTAQIKMQADCTLLYEMFVDWVAKNRPL 238 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 D + G +A ++GL D G + ++L Sbjct: 239 SADAIRDTK-AETFIGTQALELGLADAQGTLAQALEALTD 277 >gi|242239357|ref|YP_002987538.1| periplasmic protease [Dickeya dadantii Ech703] gi|242131414|gb|ACS85716.1| Peptidase S49 domain protein [Dickeya dadantii Ech703] Length = 348 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 117/270 (43%), Gaps = 18/270 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGS 79 + + P + + G ++ + E+ + +D +++ L SPGG Sbjct: 90 AKRGEEKRFKPCLYVLDFNGSMDAGEVSSLREEISAVLAVARPEDE---VLLRLESPGGV 146 Query: 80 AYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + +Q+++ + +T ++AAS GY+++C ++ IVAA +++GSIGV+ Q Sbjct: 147 VHGYGLAASQLQRLRQKGIRLTVTVDKVAASGGYMMACVADRIVAAPFAIIGSIGVVAQI 206 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P FL + ++ + K + F E + ++ ++ ++ F + VS+ R Sbjct: 207 PNFNRFLKNKDIDVELHTAGQFKRTLTLFGENTDTGREKFREELNETHELFKQFVSQMR- 265 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P ++ G W G++AK++GL+DV+G +++ + + ++ + Sbjct: 266 -PSLDIEAVATGEHWFGSQAKELGLVDVIGTSDDLL--IAEM----DNHEVLAVRYTRRK 318 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 F D S E + Q Q L Sbjct: 319 RFLDRLTGSAGDSAERLMLRWWQRGNQPLL 348 >gi|259908332|ref|YP_002648688.1| putative periplasmic protease [Erwinia pyrifoliae Ep1/96] gi|224963954|emb|CAX55459.1| Peptidase family U7 protein [Erwinia pyrifoliae Ep1/96] gi|283478271|emb|CAY74187.1| putative protease [Erwinia pyrifoliae DSM 12163] Length = 349 Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 114/265 (43%), Gaps = 18/265 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 V + I +G + + E+ + + D +++ L SPGG + Sbjct: 96 VSKGKSTLYVIDFKGSMGAGEVSSLREEVSAVMAVAEKGDE---VLLRLESPGGVVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T V ++AAS GY+++C ++ IVAA S++GSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVAVDKVAASGGYMMACVADRIVAAPFSIIGSIGVVAQIPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L + + ++ + K + F E + + ++ ++ ++ F + V + R P Sbjct: 213 LLKRNEIDVELHTAGEYKRTLTLFGENTEQGREKFREDLNETHQLFKQFVHQMR--PTLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D +G +++ A ++ + D Sbjct: 271 IDSVATGEHWYGQQALEKGLVDAIGTSDDLIIDHIAKH------QVIGVRYARRKGMMDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + LE + + Q + L Sbjct: 325 FTQSATLSLERLLLRIWQRGDKPLL 349 >gi|144898890|emb|CAM75754.1| Peptidase S49 [Magnetospirillum gryphiswaldense MSR-1] Length = 410 Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 56/258 (21%), Positives = 101/258 (39%), Gaps = 16/258 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQELIERI-------------ERISRDDSATALIVS 72 + S+ V +A + + G + + E + D A+++ Sbjct: 46 APSADVAVTPDGIAIVPVVGTLVARSGYLGAASGLTGYGDIADAIEAAATDPGVRAILLD 105 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + S GG + IQ ++++ KP+ E A SA Y I+C ++ I +T VG Sbjct: 106 VDSSGGEVGGLFDLVDHIQAIRSQCGKPIWAVADEAALSAAYAIACTADRIYVTQTGEVG 165 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ + + G++ V + K + +P ++ A +Q VD+ Y FV Sbjct: 166 SIGVVAVHRDESGADAQAGLAWTFVHAGAAKVDGNPHQPLSDSARAGLQADVDALYGRFV 225 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 LV+ R P + ++ ++ G +A GL D VG L SIR Sbjct: 226 ALVARCRKQPPEAIRA-TEAAVYRGDQAVAAGLADKVGTLRVALADLGTTLARPSIRSPV 284 Query: 251 DWNPPKNYWFCDLKNLSI 268 P + ++ + Sbjct: 285 LSKPKETTMSEQTGDIPV 302 >gi|145598216|ref|YP_001162292.1| putative periplasmic protease [Yersinia pestis Pestoides F] gi|108775493|gb|ABG18012.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Yersinia pestis Nepal516] gi|108779482|gb|ABG13540.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Yersinia pestis Antiqua] gi|145209912|gb|ABP39319.1| peptidase family U7 protein [Yersinia pestis Pestoides F] Length = 343 Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 115/267 (43%), Gaps = 12/267 (4%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATA-LIVSLSSPGGSAYA 82 + S V P + I +G I + L E I I +A +++ L SPGG + Sbjct: 85 AKSGAVAAVKPCLYVIDFKGSIGAQEVSSLREEISAILAVATAQDEVLLRLESPGGVVHG 144 Query: 83 GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + +++ R +T V ++AAS GY+++C ++ I+ A +++GSIGV+ Q P Sbjct: 145 YGLAASQLARLRQRGIRLTVAVDKVAASGGYMMACVADRIICAPFAIIGSIGVVAQIPNF 204 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + ++ + K + F E + + ++ ++ ++ F + V + R P Sbjct: 205 HRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVQQQR--PS 262 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +AK+ GL+D +G +++ + + ++ Sbjct: 263 LDIDAVATGEHWFGTQAKEKGLVDAIGTSDDLL--IAEM----DNHEVIGVRYSHRKRLI 316 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 + S + ++ + Q + L Sbjct: 317 ERFMGSATESVDSLLLRWWQRGEKPLL 343 >gi|257465744|ref|ZP_05630115.1| putative periplasmic protease [Actinobacillus minor 202] gi|257451404|gb|EEV25447.1| putative periplasmic protease [Actinobacillus minor 202] Length = 350 Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 103/231 (44%), Gaps = 12/231 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAAS 109 +E+ + +D +++ L SPGG + +Q++K + +T V ++AAS Sbjct: 124 KEITALLSIAKPNDE---VLLKLESPGGVVHGYGLAASQLQRLKAKNIPLTVAVDKVAAS 180 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 GY+++C ++ IV+A +++GSIGV+ Q P + L K + + + + K + E Sbjct: 181 GGYMMACVADKIVSAPFAVIGSIGVVAQVPNIHRLLKKHDIDVDVMTAGEYKRTVTLVGE 240 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 K Q Q ++ ++ F + V++ R P ++ G W G +A + L+D + Sbjct: 241 NTEKGKQKFQQELEETHDLFKQFVTQHR--PQLNIDKIATGEHWFGQQALALNLVDEIAT 298 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 +++ ++I + + L + +E+ + + Sbjct: 299 SDDLLVKAVE------DKEIIELKYKEKKNLTQRIGLQMEQSVENLLGKIL 343 >gi|126667357|ref|ZP_01738329.1| predicted inner membrane peptidase [Marinobacter sp. ELB17] gi|126628113|gb|EAZ98738.1| predicted inner membrane peptidase [Marinobacter sp. ELB17] Length = 362 Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 56/255 (21%), Positives = 104/255 (40%), Gaps = 17/255 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQELIERIERIS------RDDSATALIVSLSSPGGS 79 + + + V + G I+ S E + R ++V L S GG Sbjct: 102 TAETADDAVKTRVFVLDFDGDIKASDT--EGLRRAITAVLSVAKPEHDEVVVRLESGGGM 159 Query: 80 AYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 ++ + +++ + +T ++AAS GY+++C ++ IVA+ +++GSIGV+ Q Sbjct: 160 VHSYGLAAAQLDRIRAKGLNLTVCVDKVAASGGYMMACVADRIVASPFAILGSIGVVAQL 219 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P V L K V + + + K + F E K Q ++ + F V E R Sbjct: 220 PNVHRLLKKNNVDFEVLTAGEHKRTLTVFGENTDKGRQKFLADLEDIHQLFKDYVGERR- 278 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P +++G IW G A V LIDV+ +E ++ + + Sbjct: 279 -PQLDMAAVANGDIWFGRRALDVKLIDVIQTSDEYLLEAAERA------ELVLVSYQRKR 331 Query: 259 WFCDLKNLSISSLLE 273 + L+ S+ +E Sbjct: 332 TLPEKLGLAASAAVE 346 >gi|146307553|ref|YP_001188018.1| putative periplasmic protease [Pseudomonas mendocina ymp] gi|145575754|gb|ABP85286.1| inner membrane peptidase, Serine peptidase, MEROPS family S49 [Pseudomonas mendocina ymp] Length = 339 Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 110/261 (42%), Gaps = 19/261 (7%) Query: 36 PHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 P V + G I+ S E+ + DD +++ L S GG ++ Sbjct: 90 PRVFVLDFDGDIKASATDNLRHEVTALLSLAKADDE---VVLRLESGGGMVHSYGLASSQ 146 Query: 90 IQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 + ++++ +T ++AAS GY+++C I+AA +++GSIGV+ Q P V L K Sbjct: 147 LVRIRDAGIPLTVCVDKVAASGGYMMACIGQKILAAPFAILGSIGVVAQLPNVHRLLKKH 206 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 + + + + K + F E K + Q+ + +++ F V+ R P ++ Sbjct: 207 DIDFEVLTAGEYKRTLTIFGENTEKGREKFQEDLQTTHDLFKGFVARYR--PQLDIDAIA 264 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 G +W G A++ L+D + ++ L V+ + + + L+ Sbjct: 265 TGEVWLGMAAQERLLVDELKTSDQ---YLAERAVEAELFHLHFAQKKS---LQERVGLAA 318 Query: 269 SSLLED-TIPLMKQTKVQGLW 288 S+ L+ + + + Q W Sbjct: 319 SAALDRFVLTWLSRLNQQRFW 339 >gi|82776631|ref|YP_402980.1| putative periplasmic protease [Shigella dysenteriae Sd197] gi|309789066|ref|ZP_07683661.1| peptidase family S49 family protein [Shigella dysenteriae 1617] gi|81240779|gb|ABB61489.1| putative protease [Shigella dysenteriae Sd197] gi|308923337|gb|EFP68849.1| peptidase family S49 family protein [Shigella dysenteriae 1617] Length = 346 Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 90 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 149 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 150 LASSQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 209 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 210 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 267 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 268 IEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLME------GREVVNVRYMQRKRLIDR 321 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 322 FTGSAAESADRLLLRWWQRGQKPLM 346 >gi|114319494|ref|YP_741177.1| putative periplasmic protease [Alkalilimnicola ehrlichii MLHE-1] gi|114225888|gb|ABI55687.1| inner membrane peptidase [Alkalilimnicola ehrlichii MLHE-1] Length = 332 Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 99/257 (38%), Gaps = 17/257 (6%) Query: 31 VEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 + P V + G + S +E+ + + A+++ L S GG+ Sbjct: 86 DDPERPRVYVLDFVGDMRASRAQTLREEVTAILSMARAERD--AVLLRLDSQGGTVPGYG 143 Query: 85 AIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + +++ + +AAS GYL++C ++ IVAA ++VGSIGV+ P Sbjct: 144 LAASQLARLREAGIPLTVSIDRVAASGGYLMACVADRIVAAPFAVVGSIGVIGALPNFNR 203 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + + + + K S F E +A + + ++S + F + R P Sbjct: 204 FLRRHDIDFEQHTAGEWKRTLSLFGENTDEAREKFRQDLESVHRHFKGFIQRYR--PALD 261 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W EA +GL+D +G ++ L + ++ F Sbjct: 262 LDQVATGEYWLAEEALGLGLVDELGTSDD------WLLRRRDDHRLVQLRYRHREPFGQR 315 Query: 264 KNLSISSLLEDTIPLMK 280 + L + ++ Sbjct: 316 WLKAAQGALGSRLQRLR 332 >gi|161870442|ref|YP_001599614.1| putative periplasmic protease [Neisseria meningitidis 053442] gi|161595995|gb|ABX73655.1| serine protease SohB [Neisseria meningitidis 053442] gi|316983835|gb|EFV62815.1| peptidase family S49 family protein [Neisseria meningitidis H44/76] gi|319410803|emb|CBY91190.1| putative peptidase [Neisseria meningitidis WUE 2594] gi|325140763|gb|EGC63277.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis CU385] gi|325199814|gb|ADY95269.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis H44/76] Length = 350 Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 97/218 (44%), Gaps = 9/218 (4%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127 +++ L SPGG + +++++ R +T V ++AAS GY+++C ++ I +A + Sbjct: 139 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIASAPFA 198 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 +VGS+GV+ + P + L K + + + + K + E K Q + ++ ++ Sbjct: 199 IVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 258 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F + VSE+R P ++ G W G +A + LID + +++ + + Sbjct: 259 LFKQFVSENR--PQLDIEEVATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 310 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ + + L + +E + + Sbjct: 311 QVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRAD 348 >gi|260549707|ref|ZP_05823924.1| periplasmic serine protease [Acinetobacter sp. RUH2624] gi|260407224|gb|EEX00700.1| periplasmic serine protease [Acinetobacter sp. RUH2624] Length = 320 Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 109/260 (41%), Gaps = 13/260 (5%) Query: 33 DNSPHVARIAIRGQIEDS--QELIERIERISRDDSA--TALIVSLSSPGGSAYAGEAIFR 88 N+ + + +G I+ S + L E I I A ++V L SPGG + Sbjct: 54 KNNQKIFVLDFKGDIQASAVENLREEITLILATAKAGRDRVVVRLESPGGMVHGYGLAAA 113 Query: 89 AIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + ++++ ++T ++AAS GY+++C +N I++A ++VGSIGV+ Q P L + Sbjct: 114 QLVRLRDAGFLLTICVDKVAASGGYMMACIANEIISAPFAVVGSIGVVAQVPNFNRLLKE 173 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 V + + K + F E P+ ++ + ++ F V + R P + Sbjct: 174 HNVDFELYTAGQYKRTVTMFGENTPEGKAKFEEELQQTHILFKHFVEKYR--PQLNVDKV 231 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G W G +A + L+D + +E +L + N K + L Sbjct: 232 ATGEHWYGQDALDLNLVDKLQTSDEYLLALL------PQHDVYVINTRKKATLGEKLGLQ 285 Query: 268 ISSLLEDTIPLMKQTKVQGL 287 + + + IP + L Sbjct: 286 AAQMADSLIPAVMHKVADTL 305 >gi|148980525|ref|ZP_01816098.1| predicted inner membrane peptidase [Vibrionales bacterium SWAT-3] gi|145961178|gb|EDK26493.1| predicted inner membrane peptidase [Vibrionales bacterium SWAT-3] Length = 353 Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 111/263 (42%), Gaps = 17/263 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 PH+ + G I+ +E+ + D +++ L S GG + Sbjct: 97 GELDSKREPHLFVLDFNGSIDAKEVASLREEVTAVLAVAREGDE---VLLKLESGGGMVH 153 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 154 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIAQLPN 213 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E + KA + ++ ++ ++ F + + R P Sbjct: 214 FNKLLKKHDIEFEQLTAGEYKRTLTMFGENSDKAREKFKEELEETHGLFKDFIRDHR--P 271 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +A ++GL+D + +++ +I + K Sbjct: 272 ALDLDKVATGEHWFGTQAHELGLVDEIRTSDDLVVEACKDKTVLAIHYV-----QKKKLS 326 Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283 L ++ S + L+++ + Sbjct: 327 DKLAGVAGKSADSVLMKLIERGQ 349 >gi|304396079|ref|ZP_07377961.1| Peptidase S49 domain protein [Pantoea sp. aB] gi|304356448|gb|EFM20813.1| Peptidase S49 domain protein [Pantoea sp. aB] Length = 348 Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 115/264 (43%), Gaps = 12/264 (4%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGEA 85 + P + + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GQTDSVKPTLYVLDFKGSMDAGEVTSLREEISAVLAVKQPGDEVLLRLESPGGVVHGYGL 152 Query: 86 IFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 +Q+++++ IT V ++AAS GY+++C ++ IVAA S++GSIGV+ Q P Sbjct: 153 AASQLQRLRDQGLRITAAVDKVAASGGYMMACVADRIVAAPFSIIGSIGVVAQIPNFNRL 212 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L + + ++ + K + F E + + Q+ +D ++ F + V + R P Sbjct: 213 LKRNDIDVELHTAGQYKRTLTLFGENTEEGREKFQEDLDETHLLFKQFVHQMR--PSLDI 270 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 ++ G W G +A +GLID +G +++ + + + D Sbjct: 271 NKVATGEHWYGRQALNLGLIDEIGTSDDLI------IRQMDQFNVLGVHYARRRKMMDRF 324 Query: 265 NLSISSLLEDTIPLMKQTKVQGLW 288 S S+ E + + Q + L Sbjct: 325 TQSAGSVAERLLLKLWQRGEKPLL 348 >gi|119476008|ref|ZP_01616360.1| sohB protein, peptidase U7 family [marine gamma proteobacterium HTCC2143] gi|119450635|gb|EAW31869.1| sohB protein, peptidase U7 family [marine gamma proteobacterium HTCC2143] Length = 345 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 105/264 (39%), Gaps = 17/264 (6%) Query: 29 SHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYA 82 +ED + + G ++ S +E+ + + DD +++ L SPGG + Sbjct: 89 GELEDPKKRIYVLTFDGDVKASAVSSLREEITAILTVATADDE---VVLCLESPGGMVHT 145 Query: 83 GEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++ + V +AAS GY+++C N I+AA +++GSIGV+ + P Sbjct: 146 YGLAASQLARITKQNIPLTVVVDAVAASGGYMMACIGNKILAAPFAVIGSIGVVAELPNF 205 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + + + K + F E K + ++ ++ F VSE R P Sbjct: 206 HRLLKKNDIDFELFTAGEHKRTVTMFGENTDKGKAKFVEELEDTHELFKSFVSEHR--PQ 263 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G +W G A + LID + +E L + D +I ++ Sbjct: 264 VNVAEVATGEVWYGQRAIENNLIDDIQTSDE---YLMSKRSDSNIYRVSFETKK--TLQE 318 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQ 285 L + S L+++ Sbjct: 319 KLGFAAQSVTEGVVNKLVERFSSD 342 >gi|240948297|ref|ZP_04752683.1| putative periplasmic protease [Actinobacillus minor NM305] gi|240297336|gb|EER47877.1| putative periplasmic protease [Actinobacillus minor NM305] Length = 350 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 102/231 (44%), Gaps = 12/231 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAAS 109 +E+ + +D +++ L SPGG + +Q++K + +T V ++AAS Sbjct: 124 KEITALLSIAKPNDE---VLLKLESPGGVVHGYGLAASQLQRLKAKNIPLTVAVDKVAAS 180 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 GY+++C ++ I++A +++GSIGV+ Q P + L K + + + + K + E Sbjct: 181 GGYMMACVADKIISAPFAVIGSIGVVAQVPNIHRLLKKHDIDVDVMTAGEYKRTVTLVGE 240 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 K Q Q ++ ++ F + V++ R P ++ G W G +A + L+D + Sbjct: 241 NTEKGKQKFQQELEETHDLFKQFVTQHR--PQLDIEKIATGEHWFGQQALALNLVDEIAT 298 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 +++ ++I + + L + +E + M Sbjct: 299 SDDLLVKAVE------DKEIIELKYKEKKNLTQRIGLQMEQSVESLLGKML 343 >gi|288549698|ref|ZP_05967891.2| SohB protein, peptidase U7 family [Enterobacter cancerogenus ATCC 35316] gi|288317953|gb|EFC56891.1| SohB protein, peptidase U7 family [Enterobacter cancerogenus ATCC 35316] Length = 351 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 55/248 (22%), Positives = 108/248 (43%), Gaps = 16/248 (6%) Query: 30 HVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 + P V + +G ++ +E+ + D ++V L SPGG + Sbjct: 97 PQDAGKPRVYVLDFKGSMDAHEVSSLREEVTAVLAVAKPQDQ---VVVRLESPGGVVHGY 153 Query: 84 EAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 +Q+++ ++ +T V ++AAS GY+++C ++ IVAA S++GSIGV+ Q P Sbjct: 154 GLAASQLQRLREKQIPLTVAVDKVAASGGYMMACVADKIVAAPFSIIGSIGVVAQIPNFN 213 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 FL + I+ + K + E + Q ++ ++ ++H F V R P Sbjct: 214 RFLKNKEIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKDFV--HRMRPTL 271 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 ++ G W G +A++ GL+D VG +++ +L + K Sbjct: 272 DIDSVATGEHWYGIQAQEKGLVDDVGTSDDLLLNLMEGHELVG----VRFTQRKRLLDRF 327 Query: 263 LKNLSISS 270 + + S+ Sbjct: 328 TNSAAESA 335 >gi|22125947|ref|NP_669370.1| putative periplasmic protease [Yersinia pestis KIM 10] gi|45441813|ref|NP_993352.1| putative periplasmic protease [Yersinia pestis biovar Microtus str. 91001] gi|51596464|ref|YP_070655.1| periplasmic protease [Yersinia pseudotuberculosis IP 32953] gi|149365865|ref|ZP_01887900.1| peptidase family U7 protein [Yersinia pestis CA88-4125] gi|153948350|ref|YP_001400900.1| periplasmic protease [Yersinia pseudotuberculosis IP 31758] gi|162418164|ref|YP_001606741.1| putative periplasmic protease [Yersinia pestis Angola] gi|165927409|ref|ZP_02223241.1| peptidase, S49 family [Yersinia pestis biovar Orientalis str. F1991016] gi|165938261|ref|ZP_02226820.1| peptidase, S49 family [Yersinia pestis biovar Orientalis str. IP275] gi|166010779|ref|ZP_02231677.1| peptidase, S49 family [Yersinia pestis biovar Antiqua str. E1979001] gi|166210633|ref|ZP_02236668.1| peptidase, S49 family [Yersinia pestis biovar Antiqua str. B42003004] gi|167400849|ref|ZP_02306355.1| peptidase, S49 family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420332|ref|ZP_02312085.1| peptidase, S49 family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424898|ref|ZP_02316651.1| peptidase, S49 family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170024271|ref|YP_001720776.1| putative periplasmic protease [Yersinia pseudotuberculosis YPIII] gi|186895513|ref|YP_001872625.1| putative periplasmic protease [Yersinia pseudotuberculosis PB1/+] gi|218929312|ref|YP_002347187.1| putative periplasmic protease [Yersinia pestis CO92] gi|229358044|ref|YP_651485.2| putative periplasmic protease [Yersinia pestis Antiqua] gi|229559850|ref|YP_647612.2| putative periplasmic protease [Yersinia pestis Nepal516] gi|229894900|ref|ZP_04510078.1| predicted inner membrane peptidase [Yersinia pestis Pestoides A] gi|229897643|ref|ZP_04512799.1| predicted inner membrane peptidase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229898288|ref|ZP_04513435.1| predicted inner membrane peptidase [Yersinia pestis biovar Orientalis str. India 195] gi|229902147|ref|ZP_04517268.1| predicted inner membrane peptidase [Yersinia pestis Nepal516] gi|270490621|ref|ZP_06207695.1| putative signal peptide peptidase SppA, 36K type [Yersinia pestis KIM D27] gi|294503746|ref|YP_003567808.1| peptidase family U7 protein [Yersinia pestis Z176003] gi|21958888|gb|AAM85621.1|AE013808_4 putative protease [Yersinia pestis KIM 10] gi|45436675|gb|AAS62229.1| peptidase family U7 protein [Yersinia pestis biovar Microtus str. 91001] gi|51589746|emb|CAH21376.1| peptidase family U7 protein [Yersinia pseudotuberculosis IP 32953] gi|115347923|emb|CAL20845.1| peptidase family U7 protein [Yersinia pestis CO92] gi|149292278|gb|EDM42352.1| peptidase family U7 protein [Yersinia pestis CA88-4125] gi|152959845|gb|ABS47306.1| peptidase, S49 family [Yersinia pseudotuberculosis IP 31758] gi|162350979|gb|ABX84927.1| peptidase, S49 family [Yersinia pestis Angola] gi|165913922|gb|EDR32540.1| peptidase, S49 family [Yersinia pestis biovar Orientalis str. IP275] gi|165920675|gb|EDR37923.1| peptidase, S49 family [Yersinia pestis biovar Orientalis str. F1991016] gi|165990481|gb|EDR42782.1| peptidase, S49 family [Yersinia pestis biovar Antiqua str. E1979001] gi|166207813|gb|EDR52293.1| peptidase, S49 family [Yersinia pestis biovar Antiqua str. B42003004] gi|166962027|gb|EDR58048.1| peptidase, S49 family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049702|gb|EDR61110.1| peptidase, S49 family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056085|gb|EDR65863.1| peptidase, S49 family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750805|gb|ACA68323.1| Peptidase S49 domain protein [Yersinia pseudotuberculosis YPIII] gi|186698539|gb|ACC89168.1| Peptidase S49 domain protein [Yersinia pseudotuberculosis PB1/+] gi|229681043|gb|EEO77138.1| predicted inner membrane peptidase [Yersinia pestis Nepal516] gi|229688578|gb|EEO80647.1| predicted inner membrane peptidase [Yersinia pestis biovar Orientalis str. India 195] gi|229693980|gb|EEO84029.1| predicted inner membrane peptidase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701995|gb|EEO90016.1| predicted inner membrane peptidase [Yersinia pestis Pestoides A] gi|262362134|gb|ACY58855.1| peptidase family U7 protein [Yersinia pestis D106004] gi|270339125|gb|EFA49902.1| putative signal peptide peptidase SppA, 36K type [Yersinia pestis KIM D27] gi|294354205|gb|ADE64546.1| peptidase family U7 protein [Yersinia pestis Z176003] gi|320014881|gb|ADV98452.1| putative inner membrane peptidase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 348 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 115/267 (43%), Gaps = 12/267 (4%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATA-LIVSLSSPGGSAYA 82 + S V P + I +G I + L E I I +A +++ L SPGG + Sbjct: 90 AKSGAVAAVKPCLYVIDFKGSIGAQEVSSLREEISAILAVATAQDEVLLRLESPGGVVHG 149 Query: 83 GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + +++ R +T V ++AAS GY+++C ++ I+ A +++GSIGV+ Q P Sbjct: 150 YGLAASQLARLRQRGIRLTVAVDKVAASGGYMMACVADRIICAPFAIIGSIGVVAQIPNF 209 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + ++ + K + F E + + ++ ++ ++ F + V + R P Sbjct: 210 HRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVQQQR--PS 267 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +AK+ GL+D +G +++ + + ++ Sbjct: 268 LDIDAVATGEHWFGTQAKEKGLVDAIGTSDDLL--IAEM----DNHEVIGVRYSHRKRLI 321 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 + S + ++ + Q + L Sbjct: 322 ERFMGSATESVDSLLLRWWQRGEKPLL 348 >gi|238757073|ref|ZP_04618261.1| protease sohB [Yersinia aldovae ATCC 35236] gi|238704903|gb|EEP97432.1| protease sohB [Yersinia aldovae ATCC 35236] Length = 348 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 50/270 (18%), Positives = 118/270 (43%), Gaps = 18/270 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGS 79 + + + P + I +G I+ +E+ + + D +++ L SPGG Sbjct: 90 AKAGAIAAVKPCLYVIDFKGSIDAHEVTSLREEISAVLAVATAQDE---VLLRLESPGGV 146 Query: 80 AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + +++++++ +T V ++AAS GY+++C ++ I++A +++GSIGV+ Q Sbjct: 147 VHGYGLAASQLERLRHKGIRLTVAVDKVAASGGYMMACVADRIISAPFAIIGSIGVVAQI 206 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P L K + ++ + K + F E + + ++ ++ ++ F + V + R Sbjct: 207 PNFHRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVQQQR- 265 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P ++ G W G +AK+ GL+D +G +++ + + ++ + Sbjct: 266 -PSLDIDAVATGEHWFGTQAKEKGLVDAIGTSDDLL--IAEM----DNHEVIGVRYSRRK 318 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S + + + Q + L Sbjct: 319 RLMDRFTGSAAESADRLLLRWWQRGEKPLL 348 >gi|120602110|ref|YP_966510.1| peptidase S49 [Desulfovibrio vulgaris DP4] gi|120562339|gb|ABM28083.1| protein C, Serine peptidase, MEROPS family S49 [Desulfovibrio vulgaris DP4] Length = 408 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 94/228 (41%), Gaps = 11/228 (4%) Query: 38 VARIAIRGQIE--------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 VA + +RG + + + +++ D + A+++++ SPGG+ + Sbjct: 51 VAVVNMRGTLTKRGSWWTTGMEGVRTTVQQALDDPAVRAVLLAIDSPGGTVDGTRELADW 110 Query: 90 I--QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 I + KP+ + SA Y I ++ + A +LVGS+GVL+ + +L+ Sbjct: 111 IAARVADGGKPIASYADGTMCSAAYWIGGSTGRVFAPAAALVGSVGVLWMHYDWSQYLET 170 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 G+ + + KA +P + ++ Q ++D++Y F+ VS + Sbjct: 171 NGIRATYITAGSRKAAGAPEAPLSDNDKAYFQHLIDTAYTQFLDGVSAPMGLDRANPAAW 230 Query: 208 SDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIKDWNP 254 +DG+++ EA +GL+ + +L + + Sbjct: 231 ADGQVFRATEALALGLVTAIVPDLAGAVAALSQEVHMDAKELAAKYPE 278 >gi|119503274|ref|ZP_01625358.1| Cell surface receptor IPT/TIG [marine gamma proteobacterium HTCC2080] gi|119460920|gb|EAW42011.1| Cell surface receptor IPT/TIG [marine gamma proteobacterium HTCC2080] Length = 360 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 57/270 (21%), Positives = 109/270 (40%), Gaps = 12/270 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGS 79 S S E + + + +G I S+ L E I +++ L SPGG Sbjct: 98 FGSSDSKDDEKSGSRLFVLRFQGDISASETESLREEISAIAPELRKGDEVLLCLESPGGM 157 Query: 80 AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 ++ +Q++++ +T V ++AAS GY+++C + I++A +++GSIGVL Q Sbjct: 158 VHSYGLAASQLQRIRSTGATLTVAVDKVAASGGYMMACVGDRIISAPFAVIGSIGVLAQL 217 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P L K V + + + K + F E + ++ +Y F V+ +R Sbjct: 218 PNFHRLLKKNDVDFELLTAGKYKRTLTMFGENTDDGRAKFVEDLEDTYDLFKDFVAINR- 276 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P ++ G IW G A L+D + + L + +I+ Sbjct: 277 -PVVDIDSVATGEIWYGQRAVDQNLVDELSTSD---AYLQTRLAETEAFEIRFVAKKS-- 330 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + + ++ + +E T + Q L Sbjct: 331 -WQEKFGMAAGAGIERTFLRLWQQGASRLL 359 >gi|291045064|ref|ZP_06570772.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291011067|gb|EFE03064.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|317163613|gb|ADV07154.1| putative periplasmic protease [Neisseria gonorrhoeae TCDC-NG08107] Length = 366 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 98/218 (44%), Gaps = 9/218 (4%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127 +++ L SPGG + +++++ R +T V ++AAS GY+++C ++ IV+A + Sbjct: 155 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 214 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 ++GS+GV+ + P + L K + + + + K + E K Q + ++ ++ Sbjct: 215 IIGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 274 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F + VSE+R P ++ G W G +A + LID + +++ + + Sbjct: 275 LFKQFVSENR--PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 326 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ + + L + +E + + Sbjct: 327 QVIEVKYQEKRSLIQRIGLQAEASVEKLFAKLVNRRAD 364 >gi|240016949|ref|ZP_04723489.1| putative periplasmic protease [Neisseria gonorrhoeae FA6140] gi|240117127|ref|ZP_04731189.1| putative periplasmic protease [Neisseria gonorrhoeae PID1] gi|268602813|ref|ZP_06136980.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268586944|gb|EEZ51620.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] Length = 350 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 98/218 (44%), Gaps = 9/218 (4%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127 +++ L SPGG + +++++ R +T V ++AAS GY+++C ++ IV+A + Sbjct: 139 VLIRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 198 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 ++GS+GV+ + P + L K + + + + K + E K Q + ++ ++ Sbjct: 199 IIGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 258 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F + VSE+R P ++ G W G +A + LID + +++ + + Sbjct: 259 LFKQFVSENR--PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 310 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ + + L + +E + + Sbjct: 311 QVIEVKYQEKRSLIQRIGLQAEASVEKLFAKLVNRRAD 348 >gi|89898686|ref|YP_515796.1| periplasmic serine proteases IV [Chlamydophila felis Fe/C-56] gi|89332058|dbj|BAE81651.1| periplasmic serine proteases IV [Chlamydophila felis Fe/C-56] Length = 338 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 112/234 (47%), Gaps = 12/234 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQELIERIERISR-------DDSATALIVSLSSPGGSAY 81 + ++P +A + ++ I ++ ++ D +I+ + PGG + Sbjct: 60 KDLGKDAPIIAVLEMKDVISSAKHTARILQDAITTLDSAPYKDRVKGIIIDMDCPGGEVF 119 Query: 82 AGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQY 138 + IQ K R V+ + AS GY ++CA++ I + +SL+GS+GVL Y Sbjct: 120 EIARTYSVIQFWKQRTNCPIYVFVNGLCASGGYYVACAADKIYSTSSSLIGSVGVLSGPY 179 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 VK L + GV + + KA +P++E K ++ Q+V++ Y FV +V +R Sbjct: 180 FNVKEGLSRYGVQSDLLTAGKDKAPMNPYTEWTTKDREIRQEVINYLYGQFVDVVVTNRP 239 Query: 199 -IPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQSIRKIK 250 + DK + + R+++ +A + G +DVV +++V Q L + ++ ++ Sbjct: 240 LLTKDKLVSVLGARLYSPEKALEEGYVDVVNVTKQQVIQDLVSDCKIENNYRVI 293 >gi|261379008|ref|ZP_05983581.1| peptidase, S49 family [Neisseria cinerea ATCC 14685] gi|269144540|gb|EEZ70958.1| peptidase, S49 family [Neisseria cinerea ATCC 14685] Length = 350 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 98/218 (44%), Gaps = 9/218 (4%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127 +++ L SPGG + +++++ R +T V ++AAS GY+++C ++ IV+A + Sbjct: 139 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 198 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 ++GS+GV+ + P + L K + + + + K + E K Q Q ++ ++ Sbjct: 199 IIGSVGVVAEVPNIHRLLKKYDIDVDVMTAGEFKRTVTFMGENTEKGKQKFQQELEETHQ 258 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F + VSE+R P ++ G W G +A ++ L+D + +++ + + Sbjct: 259 LFKQFVSENR--PQLDIEKVATGEHWFGRQALELNLVDSISTSDDLLLKAFE------NK 310 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 +I + L + +E+ + Sbjct: 311 QIIEVKYQAKQSLIQRIGLQAEASVENLFAKFANRRAD 348 >gi|194097841|ref|YP_002000886.1| putative periplasmic protease [Neisseria gonorrhoeae NCCP11945] gi|193933131|gb|ACF28955.1| putative protease [Neisseria gonorrhoeae NCCP11945] Length = 368 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 98/218 (44%), Gaps = 9/218 (4%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127 +++ L SPGG + +++++ R +T V ++AAS GY+++C ++ IV+A + Sbjct: 157 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 216 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 ++GS+GV+ + P + L K + + + + K + E K Q + ++ ++ Sbjct: 217 IIGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 276 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F + VSE+R P ++ G W G +A + LID + +++ + + Sbjct: 277 LFKQFVSENR--PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 328 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ + + L + +E + + Sbjct: 329 QVIEVKYQEKRSLIQRIGLQAEASVEKLFAKLVNRRAD 366 >gi|54113939|gb|AAV29603.1| NT02FT1074 [synthetic construct] Length = 339 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 104/253 (41%), Gaps = 14/253 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAY 81 + + I +G I+ SQ E+ + + +D +IV + SPGG Sbjct: 86 DKQDDKPKQKIFVINFKGDIDASQVENLRNEVSAILAVANTEDE---IIVRIDSPGGVVN 142 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPY 140 +++++ +T + A++G + A + I+AA ++VGSIGV+ P Sbjct: 143 GYGFAAAQLERIRQAGINLTVCIDQVAASGGYMMSAVAHKIIAAPFAIVGSIGVVGTIPN 202 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 ++ L+K G++++ S K + + + ++S + F + + R P Sbjct: 203 IRELLEKNGINVEMHTSGEYKRTLTTVGVNTEEGRNKFKQDLESIHQLFKKHILVYR--P 260 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +A ++GL+D + ++ L L ++ ++ + + Sbjct: 261 SLDIDKVATGEYWFGKDALELGLVDKIQTYDDYLIDL--LKKQHNVYEVSYVIKKEKGFL 318 Query: 261 CDLKNLSISSLLE 273 ++ ++ Sbjct: 319 RSKFSMLKRAITN 331 >gi|329570276|gb|EGG52014.1| signal peptide peptidase SppA [Enterococcus faecalis TX1467] Length = 184 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 55/173 (31%), Positives = 86/173 (49%) Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 P+ T AAS GY IS S+ I A E + GSIGV+ L+KLGVS + Sbjct: 8 DIPIYTAFKNTAASGGYYISAGSDKIFATEETTTGSIGVIISGLNYSGLLEKLGVSDATY 67 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215 KS +K SP + + + +++Q+ V S+Y FV +V++ RN+ + L+DGRI+ G Sbjct: 68 KSGELKDMMSPQHKPSEEEKKVIQEFVMSAYDRFVNIVAKGRNMDTNAVKELADGRIYDG 127 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 +A + GL+D +G E+ SL I+ N ++ L + Sbjct: 128 NQAVENGLVDQIGYSEDALDSLKKEKKLTDATVIEYKNDTTSFASSWLGKKLL 180 >gi|308389720|gb|ADO32040.1| putative secreted protease [Neisseria meningitidis alpha710] gi|325132727|gb|EGC55410.1| putative signal peptide peptidase SppA, 36K type [Neisseria meningitidis M6190] Length = 366 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 98/218 (44%), Gaps = 9/218 (4%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127 +++ L SPGG + +++++ R +T V ++AAS GY+++C ++ IV+A + Sbjct: 155 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 214 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 +VGS+GV+ + P + L K + + + + K + E K Q + ++ ++ Sbjct: 215 IVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 274 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F + VSE+R P ++ G W G +A + LID + +++ + + Sbjct: 275 LFKQFVSENR--PQLDIEEVATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 326 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ + + L + +E + + Sbjct: 327 QVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRAD 364 >gi|315297262|gb|EFU56542.1| putative signal peptide peptidase SppA [Escherichia coli MS 16-3] Length = 349 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINASDEVILSLME------GREVVNVRYMQRKRLIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349 >gi|326404357|ref|YP_004284439.1| putative peptidase S49 [Acidiphilium multivorum AIU301] gi|325051219|dbj|BAJ81557.1| putative peptidase S49 [Acidiphilium multivorum AIU301] Length = 265 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 63/255 (24%), Positives = 98/255 (38%), Gaps = 15/255 (5%) Query: 34 NSPHVARIAIRGQI------EDSQELIERIERISRDDS--ATALIVSLSSPGGSAYAGEA 85 + P V I + G I + + I+R LI+++ SPGGS + Sbjct: 8 SRPCVPVIRLAGLISPREGAVNLERFAPAIDRGFDLAKGGTKLLILAIESPGGSPVQSDL 67 Query: 86 IFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I R I++ V+ + ++ AS GY I+CA + I A S+VGSIGV+ + Sbjct: 68 IGRHIRRKAEETGVRVLAVIGDVGASGGYWIACAGDEIFANPMSIVGSIGVVGGGFGLHD 127 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 + + G+ + V + K PFS P Q ++D + F V E R Sbjct: 128 LIRRFGIERRVVTAGANKLRNDPFSPERPGDAAFNQALLDDIHDAFKAWVRERRGAALKG 187 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 + DG G+ AK GLID G + G K P + + L Sbjct: 188 DDTVFDGSYMLGSAAKARGLIDGFGDVRGLIT-----GRCGPRAKPVFLGPKRKFSLLRL 242 Query: 264 KNLSISSLLEDTIPL 278 S L + + Sbjct: 243 FGRSSLIELANAMEA 257 >gi|260598142|ref|YP_003210713.1| putative inner membrane peptidase [Cronobacter turicensis z3032] gi|260217319|emb|CBA31301.1| Probable protease sohB [Cronobacter turicensis z3032] Length = 349 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 109/267 (40%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYA 82 P + + +G I+ + + + ++ A +++ L SPGG + Sbjct: 93 GEAAPAGKPTLYVLDFKGSIDAHE--VTALREEVTAVLAVAKPADEVLLRLESPGGVVHG 150 Query: 83 GEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +Q+++ R+ V ++AAS GY+++C +N IVAA +++GSIGV+ Q P Sbjct: 151 YGLAASQLQRLRERQIPLTIAVDKVAASGGYMMACVANKIVAAPFAIIGSIGVVAQIPNF 210 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L + + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 211 NRLLKRNDIDIELHTAGQYKRTLTLLGENTEEGREKFREDLNETHQLFKEFVHSMR--PS 268 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +A++ GL+D + +++ + R + + Sbjct: 269 LDIEAVATGEHWYGVQAQEKGLVDDISTSDDLIIARMQ------ERDVVSLRYLQRKRLM 322 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S + L+ + Q + L Sbjct: 323 DRFTGSAAQSLDRLLLRWWQRGQKPLL 349 >gi|254670000|emb|CBA04724.1| putative secreted protease [Neisseria meningitidis alpha153] Length = 366 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 98/218 (44%), Gaps = 9/218 (4%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127 +++ L SPGG + +++++ R +T V ++AAS GY+++C ++ IV+A + Sbjct: 155 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 214 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 +VGS+GV+ + P + L K + + + + K + E K Q + ++ ++ Sbjct: 215 IVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 274 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F + VSE+R P ++ G W G +A + LID + +++ + + Sbjct: 275 LFKQFVSENR--PQLDIEEVATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 326 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ + + L + +E + + Sbjct: 327 QVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRAD 364 >gi|269102960|ref|ZP_06155657.1| putative sohB protein peptidase U7 family [Photobacterium damselae subsp. damselae CIP 102761] gi|268162858|gb|EEZ41354.1| putative sohB protein peptidase U7 family [Photobacterium damselae subsp. damselae CIP 102761] Length = 336 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 98/226 (43%), Gaps = 12/226 (5%) Query: 40 RIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 I +G I+ + E+ + D +++ L + GG + + ++ Sbjct: 92 VIDFKGGIDAREVSALRQEVTAILAVAQEGDE---VLLRLETGGGMVHDYGLASSQLDRL 148 Query: 94 KNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 K + V ++AAS GY+++C ++ I++A ++VGSIGV+ Q P L K + Sbjct: 149 KAAGLKLTISVDKVAASGGYMMACVADKIISAPFAIVGSIGVIAQIPNFNKVLKKNDIEF 208 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 + + + K + F E KA + + ++ ++ F ++ R P ++ G Sbjct: 209 EQITAGEFKRTLTMFGENTDKAREKFKLEIEETHGLFKDFIANHR--PELDLNKVATGEH 266 Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 W G +A ++GL+D +G ++ + ++ ++ + Sbjct: 267 WFGQQAFELGLVDAIGTSDDFITAACKERKVLGVKYVQRKKLAEKL 312 >gi|322513452|ref|ZP_08066564.1| protease SohB [Actinobacillus ureae ATCC 25976] gi|322120743|gb|EFX92624.1| protease SohB [Actinobacillus ureae ATCC 25976] Length = 350 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 114/261 (43%), Gaps = 18/261 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSA 80 E + + G ++ S +E+ + +D +++ L SPGG Sbjct: 93 GGEKTEAEKSRLFVLKFNGDVQASTVNALAKEISAVLSLAKAEDE---VLLKLESPGGVV 149 Query: 81 YAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + +Q++++ +T V ++AAS GY+++C +N IV+A +++GS+GV+ Q P Sbjct: 150 HGYGLAASQLQRLRDHNIPLTVAVDKVAASGGYMMACVANKIVSAPFAIIGSVGVVAQVP 209 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + L K + + + + K + E K Q Q ++ ++ F + V+++R Sbjct: 210 NIHRLLKKHDIDVDVMTAGEYKRTVTLVGENTEKGKQKFQQELEETHELFKQFVAQNR-- 267 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 P + ++ G W G +A + L+D + +++ + +++ + + + Sbjct: 268 PQLEIEKIATGEHWFGKQALALNLVDEISTSDDLLLNAVK------EKEVIELSFKEKKN 321 Query: 260 FCDLKNLSISSLLEDTIPLMK 280 + + +E+ I + Sbjct: 322 LTQRLGVQMEQSVENIIAKLL 342 >gi|253688400|ref|YP_003017590.1| Peptidase S49 domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754978|gb|ACT13054.1| Peptidase S49 domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 348 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 105/247 (42%), Gaps = 12/247 (4%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYA 82 + + P + + G ++ + L E I ++ +++ L SPGG + Sbjct: 90 AKRGEEKSVKPCLYVLDFNGSMDAGEVSSLREEISAVLAVAKPQDEVLLRLESPGGVVHG 149 Query: 83 GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +Q+++ +T V ++AAS GY+++C ++ IVAA ++VGSIGV+ Q P Sbjct: 150 YGLAASQLQRLRQGGVRLTVAVDKVAASGGYMMACVADRIVAAPFAIVGSIGVVAQIPNF 209 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L + ++ + K + F E + + ++ ++ ++ F V + R P Sbjct: 210 HRLLKNKDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNVTHTLFKDFVQQMR--PS 267 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE-VWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +AK +GLID +G ++ + + + V + K Sbjct: 268 LDIDSVATGEHWFGTQAKDLGLIDAIGTSDDLLIAEMTSHEVLS-----VRYTRRKRLLD 322 Query: 261 CDLKNLS 267 + Sbjct: 323 RLTGSAG 329 >gi|163784834|ref|ZP_02179617.1| proteinase IV [Hydrogenivirga sp. 128-5-R1-1] gi|159879894|gb|EDP73615.1| proteinase IV [Hydrogenivirga sp. 128-5-R1-1] Length = 172 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 76/162 (46%) Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 IS A+ I A ++ GSIGV+ Q+ + ++K+GV I ++KS K P ++ P+ Sbjct: 1 ISAAATEIFANPGTITGSIGVIVQHMDLTNLMNKVGVKITNIKSGKNKDILYPNHKLKPE 60 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 ++++ V Y F+ V + R I +K +DGR+++G +A K+GL+D +G ++ Sbjct: 61 EAKLIKQTVLDVYEQFLDAVVKYRKIDKEKLRPYADGRVFSGRQALKLGLVDKLGNLQDA 120 Query: 234 WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 L + + + L I L D Sbjct: 121 VDEARKLIGKEGKSAVVIKLGRQKPLLEKLLGAKIDLNLLDL 162 >gi|145637711|ref|ZP_01793364.1| predicted inner membrane peptidase [Haemophilus influenzae PittHH] gi|145269113|gb|EDK09063.1| predicted inner membrane peptidase [Haemophilus influenzae PittHH] Length = 323 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 102/222 (45%), Gaps = 13/222 (5%) Query: 38 VARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 V + G I S+ E+ + +D +++ L SPGG + + Sbjct: 106 VYVLDFCGDISASETTALREEISAILNVAKSEDE---VLLRLESPGGIVHNYGFAASQLS 162 Query: 92 KVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++K + +T V ++AAS GY+++C ++ IV+A +++GSIGV+ Q P V L K V Sbjct: 163 RLKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDV 222 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 + + + K + E K Q Q ++ ++ F + VS++R ++ G Sbjct: 223 DVDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATG 280 Query: 211 RIWTGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKD 251 W G +A + L+D + +++ + + V ++K+ Sbjct: 281 EHWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKN 322 >gi|290470|gb|AAA24639.1| sohB [Escherichia coli str. K-12 substr. W3110] Length = 349 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGE 84 D+ P V + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 LAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 213 FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D + +EV SL R++ + + D Sbjct: 271 IEQVATGEHWYGQQAVEKGLVDEINASDEVILSLME------GREVVNVRYMQRKRLIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + + + Q + L Sbjct: 325 FTGSAAESADRLLLRWWQRGQKPLM 349 >gi|307109943|gb|EFN58180.1| hypothetical protein CHLNCDRAFT_142011 [Chlorella variabilis] Length = 479 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 93/230 (40%), Gaps = 18/230 (7%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSA---------TALI 70 + +S + N + + + G ++ + R+ D L Sbjct: 152 LARWSIMGRKDFNEALITVVKLSGVLQAFTGPARAPQARRLLYLDRVEKWFARAFTKGL- 210 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSL 128 + GS E IF I+++ PV T ++AAS GY + CA + A ETSL Sbjct: 211 --KPAACGSPVQSELIFGLIRRLSKSTGIPVYTFAEDVAASGGYWLMCAGDKSYALETSL 268 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 VGS+GV+ KLGV + + K + PF V P ++D++D + Sbjct: 269 VGSVGVISATFGATEAAKKLGVERRVFTAGEAKMQLDPFLPVQPDQEARLRDIMDDLHQA 328 Query: 189 FVRLVSESRNIPYDK--TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 F V SR L GR WTG +A K+GL+D +G V Q Sbjct: 329 FKERVRGSRGERLAAGRDDELFSGRAWTGRQALKLGLVDGLGDMRSVMQE 378 >gi|110668686|ref|YP_658497.1| protease IV; endopeptidase IV; signal peptide peptidase [Haloquadratum walsbyi DSM 16790] gi|109626433|emb|CAJ52894.1| Protease IV; endopeptidase IV; probable signal peptide peptidase [Haloquadratum walsbyi DSM 16790] Length = 328 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 88/241 (36%), Gaps = 14/241 (5%) Query: 25 FSWSSHVEDNSPHVARIAIRG--QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 S S E VA I RG + + E + + S A+++ + SPGG A Sbjct: 36 VSGSGPDEGGESSVAVITFRGGTTSGNVAAVTESLREARTNGSVDAIVLRIDSPGGPVDA 95 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E + A+ + ++ PV+ V AAS GY + IV +S VGSIGV+ Q P Sbjct: 96 SEEFYLAVNRTASQMPVVAYVEGTAASGGYFGIAPVDEIVVKPSSTVGSIGVIVQAPL-S 154 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 + ++S P KA+ + +++ ++ FV + + R Sbjct: 155 AVENIENQRQVFIRSGPDKAQIT---------RDGLRENLELLQKAFVDTIIKHRGDELS 205 Query: 203 KTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG-VDQSIRKIKDWNPPKNYWF 260 + ++ G+ + G A G D +G + + + Sbjct: 206 LSRTEVATGQTFLGPRAVDNGFADQIGDLNVAIEEAAGRADGISGDEYNVYYKSSRAQQL 265 Query: 261 C 261 Sbjct: 266 N 266 >gi|59801605|ref|YP_208317.1| putative periplasmic protease [Neisseria gonorrhoeae FA 1090] gi|59718500|gb|AAW89905.1| putative serine protease [Neisseria gonorrhoeae FA 1090] Length = 350 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 98/218 (44%), Gaps = 9/218 (4%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127 +++ L SPGG + +++++ R +T V ++AAS GY+++C ++ IV+A + Sbjct: 139 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 198 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 ++GS+GV+ + P + L K + + + + K + E K Q + ++ ++ Sbjct: 199 VIGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 258 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F + VSE+R P ++ G W G +A + LID + +++ + + Sbjct: 259 LFKQFVSENR--PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 310 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ + + L + +E + + Sbjct: 311 QVIEVKYQEKRSLIQRIGLQAEASVEKLFAKLVNRRAD 348 >gi|229220652|ref|YP_050383.2| putative periplasmic protease [Pectobacterium atrosepticum SCRI1043] Length = 348 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 110/267 (41%), Gaps = 12/267 (4%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATA-LIVSLSSPGGSAYA 82 + + P + + G ++ + L E I + +++ L SPGG + Sbjct: 90 AKRGEEKSVKPCLYVLDFNGSMDAGEVSSLREEISAVLAVAKPKDEVLLRLESPGGVVHG 149 Query: 83 GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +Q+++ +T V ++AAS GY+++C ++ IVAA ++VGSIGV+ Q P Sbjct: 150 YGLAASQLQRLRQGGVRLTVAVDKVAASGGYMMACVADHIVAAPFAIVGSIGVVAQIPNF 209 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L + ++ + K + F E + + ++ ++ ++ F V + R P Sbjct: 210 HRLLKNKDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNVTHTLFKDFVQQMR--PS 267 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +AK + LID +G +++ L + + ++ + Sbjct: 268 LDIDSVATGEHWFGTQAKDLKLIDAIGTSDDL------LIGEIANHEVLSVRYTRRKRLL 321 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S E + Q + L Sbjct: 322 DRLTGSAGDTAERLMLRWWQRGSKPLL 348 >gi|260459549|ref|ZP_05807803.1| peptidase S49 [Mesorhizobium opportunistum WSM2075] gi|259034351|gb|EEW35608.1| peptidase S49 [Mesorhizobium opportunistum WSM2075] Length = 302 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 88/226 (38%), Gaps = 23/226 (10%) Query: 37 HVARIAIRGQIEDS--------------QELIERIERISRDDSATALIVSLSSPGGSAYA 82 VA + I G I + +++ D +A+++ + SPGG Sbjct: 60 SVAVLRIVGPILPRAEAVVDVSQPAALMTDFRRAFSQVANDAGVSAIVIDIDSPGGRVDL 119 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAA-SAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 I+ + I V A SA Y I+ A++ IV + + VGSIGV + + Sbjct: 120 VPETAAMIRSARRDGRPIVAVANTIALSAAYWIASAADEIVVSPSGAVGSIGVYTVHEDM 179 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L+ GV + + + P K E +PF ++ + + V + Y F V++ R +P Sbjct: 180 SAALEAEGVKVTMISAGPRKVEGNPFQPLDEAGLASLLGNVTTFYGMFAGDVAKGRGVPV 239 Query: 202 DKTLV--------LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 GR EA K+G++D V EE L Sbjct: 240 SVVKADPESSDKNFGGGRAVLAQEALKLGMVDRVATLEETVARLAK 285 >gi|307310225|ref|ZP_07589874.1| peptidase S49 [Sinorhizobium meliloti BL225C] gi|306899777|gb|EFN30402.1| peptidase S49 [Sinorhizobium meliloti BL225C] Length = 301 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 14/215 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 P +A I I G + + + ++ D A++ + S GG Sbjct: 77 PGIALIEIEGSLVNKGKWIGKSCGMTSYEAIGVQVRDCIERDDIKAVVFEVDSYGGEVTG 136 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I ++ KP I + + A SAGYL++ +V +T + GSIGV+ + + Sbjct: 137 AFDCAEQIFELSQLKPTIAVLTDHACSAGYLLASPCRQLVIPQTGICGSIGVISMHVDMS 196 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 +L K G+ + +K+ KA+ +P+ + +Q ++ F V+ R Sbjct: 197 AWLAKEGLKVTILKAGEHKADFNPYEAIPDDVLQQELAELEELRVEFAATVARYRAGRLT 256 Query: 203 KTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 + L ++ R++ G +A GL+D V +V ++ Sbjct: 257 QQSALATEARVYRGQKAVDAGLVDAVARPSQVLEA 291 >gi|330808706|ref|YP_004353168.1| peptidase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376814|gb|AEA68164.1| putative peptidase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 343 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 51/252 (20%), Positives = 104/252 (41%), Gaps = 12/252 (4%) Query: 29 SHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAGEA 85 P V + G I+ S + L I + + +++ L S GG ++ Sbjct: 87 KDKPAAKPRVFVLDFDGDIKASATESLRHEITALLTLATPKDEVVLRLESGGGMVHSYGL 146 Query: 86 IFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + +++ +T ++AAS GY+++C I++A +++GSIGV+ Q P V Sbjct: 147 ASSQLARIRQAGVPLTVCIDKVAASGGYMMACIGEKIISAPFAILGSIGVVAQLPNVNRL 206 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K + + + + K + F E K + Q+ +D ++ F VS R P Sbjct: 207 LKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLDITHELFKNFVSNYR--PQLAI 264 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 ++ G +W G A+ GL+D + +E L + + + + + Sbjct: 265 DEVATGEVWLGVAAQGKGLVDELKTSDE---YLAERAKGAELYHL---HYAERKSLQERI 318 Query: 265 NLSISSLLEDTI 276 ++ S ++ + Sbjct: 319 GMAASGSVDRVL 330 >gi|88800083|ref|ZP_01115653.1| probable protease [Reinekea sp. MED297] gi|88777209|gb|EAR08414.1| probable protease [Reinekea sp. MED297] Length = 334 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 113/252 (44%), Gaps = 14/252 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYAG 83 VE + P + +G I+ SQ +E + + ++ +I+++ SPGGS Sbjct: 82 DKVESDRPKAYALKFKGDIQASQ--VEALRQEVTAILTTAKEGEEVIITIESPGGSVSGY 139 Query: 84 EAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + ++K++ +T ++AAS GY+++C ++ I+AA S+VGSIGVL Q P + Sbjct: 140 GLAASQLLRLKDKGLKLTACVDQVAASGGYMMACVADRILAAPFSIVGSIGVLSQVPNIH 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 FL + V + + + KA + E + Q D +++ + F LV R Sbjct: 200 RFLKRFDVDVDVLTAGKHKAPITFMGENTEEGKQKHVDDLNAIHQRFKALVKLHREEL-- 257 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 +S+G W +A + L+D + + L +L + +++ W P K+ Sbjct: 258 NIDDVSEGDFWLAEDALQRKLVDELMTSDS---YLMSLCESTDVYRVR-WQPHKSLEQRI 313 Query: 263 LKNLSISSLLED 274 + + + Sbjct: 314 KGASAAIMAVVE 325 >gi|114327168|ref|YP_744325.1| signal peptide peptidase sppA [Granulibacter bethesdensis CGDNIH1] gi|114315342|gb|ABI61402.1| signal peptide peptidase sppA [Granulibacter bethesdensis CGDNIH1] Length = 270 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 103/250 (41%), Gaps = 9/250 (3%) Query: 38 VARIAIRGQIE-----DSQELIERIERISRDDSATA-LIVSLSSPGGSAYAGEAIFRAIQ 91 + + ++G + + + I + + LI+S+ SPGGS + I I+ Sbjct: 20 IPVLELKGILSRRGPLSFETVEPAIRKAAALAEKRGALILSIDSPGGSPVQSDQIAALIR 79 Query: 92 KVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 + K + E+ AS GY ++CA++ I+A+ S+VGSIGV+ + +++LG Sbjct: 80 REAEEKSFRVYAVIQEVGASGGYWLACAADEIMASPMSIVGSIGVVGGGFGLNRLIERLG 139 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLS 208 + + + K PF P+ V + +++ + F V + R + Sbjct: 140 IDRRLHTAGQNKRRGDPFLPEKPEDVAFIAGLMEDIHASFKDWVRQRRGARLTSDESAIF 199 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 DG G +A +GLID + + + L G + + + + + Sbjct: 200 DGGYMLGRQAVTLGLIDGLTDLTALVEQLGGKGAQPKLFRPRLRRGLLSRLPSLSAGALL 259 Query: 269 SSLLEDTIPL 278 ++ E + L Sbjct: 260 DAMEERRLDL 269 >gi|296102097|ref|YP_003612243.1| putative periplasmic protease [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056556|gb|ADF61294.1| putative periplasmic protease [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 348 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 108/248 (43%), Gaps = 16/248 (6%) Query: 30 HVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 E + P V + +G ++ +E+ + D ++V L SPGG + Sbjct: 94 PEETSIPRVYVLDFKGSMDAHEVSSLREEVTAVLAVAKPQDQ---VVVRLESPGGVVHGY 150 Query: 84 EAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 +Q+++ ++ +T V ++AAS GY+++C ++ IVAA S++GSIGV+ Q P Sbjct: 151 GLAASQLQRLREKQIPLTVAVDKVAASGGYMMACVADKIVAAPFSIIGSIGVVAQIPNFN 210 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 FL + I+ + K + E + Q ++ ++ ++H F V R P Sbjct: 211 RFLKSKEIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKDFV--HRMRPAL 268 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 ++ G W G +A + GL+D VG +++ +L + K Sbjct: 269 DIDQVATGEHWYGTQALEKGLVDEVGTSDDLLLNLMEGRELVG----VRFTQRKRLLDRF 324 Query: 263 LKNLSISS 270 + + S+ Sbjct: 325 TNSAAESA 332 >gi|254672356|emb|CBA05569.1| putative secreted protease [Neisseria meningitidis alpha275] Length = 366 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 98/218 (44%), Gaps = 9/218 (4%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127 +++ L SPGG + +++++ R +T V ++AAS GY+++C ++ IV+A + Sbjct: 155 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 214 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 +VGS+GV+ + P + L K + + + + K + E K Q + ++ ++ Sbjct: 215 IVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 274 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F + VSE+R P ++ G W G +A + LID + +++ + + Sbjct: 275 LFKQFVSENR--PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 326 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ + + L + +E + + Sbjct: 327 QVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRAD 364 >gi|49611742|emb|CAG75191.1| protease [Pectobacterium atrosepticum SCRI1043] Length = 350 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 110/267 (41%), Gaps = 12/267 (4%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATA-LIVSLSSPGGSAYA 82 + + P + + G ++ + L E I + +++ L SPGG + Sbjct: 92 AKRGEEKSVKPCLYVLDFNGSMDAGEVSSLREEISAVLAVAKPKDEVLLRLESPGGVVHG 151 Query: 83 GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +Q+++ +T V ++AAS GY+++C ++ IVAA ++VGSIGV+ Q P Sbjct: 152 YGLAASQLQRLRQGGVRLTVAVDKVAASGGYMMACVADHIVAAPFAIVGSIGVVAQIPNF 211 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L + ++ + K + F E + + ++ ++ ++ F V + R P Sbjct: 212 HRLLKNKDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNVTHTLFKDFVQQMR--PS 269 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +AK + LID +G +++ L + + ++ + Sbjct: 270 LDIDSVATGEHWFGTQAKDLKLIDAIGTSDDL------LIGEIANHEVLSVRYTRRKRLL 323 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S E + Q + L Sbjct: 324 DRLTGSAGDTAERLMLRWWQRGSKPLL 350 >gi|293399691|ref|ZP_06643843.1| serine protease SohB [Neisseria gonorrhoeae F62] gi|291609942|gb|EFF39065.1| serine protease SohB [Neisseria gonorrhoeae F62] Length = 359 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 98/218 (44%), Gaps = 9/218 (4%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127 +++ L SPGG + +++++ R +T V ++AAS GY+++C ++ IV+A + Sbjct: 148 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 207 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 ++GS+GV+ + P + L K + + + + K + E K Q + ++ ++ Sbjct: 208 VIGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 267 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F + VSE+R P ++ G W G +A + LID + +++ + + Sbjct: 268 LFKQFVSENR--PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 319 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ + + L + +E + + Sbjct: 320 QVIEVKYQEKRSLIQRIGLQAEASVEKLFAKLVNRRAD 357 >gi|62184771|ref|YP_219556.1| putative exported protease [Chlamydophila abortus S26/3] gi|62147838|emb|CAH63584.1| putative exported protease [Chlamydophila abortus S26/3] Length = 335 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 113/234 (48%), Gaps = 12/234 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQELIERIERISR-------DDSATALIVSLSSPGGSAY 81 V ++P +A + ++ I S+ + I+ D +I+ + PGG + Sbjct: 57 KDVGKDAPIIAVLEMKDVIASSKHTAKIIQEAITTLDSPPYKDRVKGIIIDMDCPGGEVF 116 Query: 82 AGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQY 138 ++ IQ K R V+ + AS GY ++CA++ I + +SL+GSIGVL Y Sbjct: 117 EISRVYSTIQFWKQRTQCPVYVFVNGLCASGGYYVACAADKIYSTSSSLIGSIGVLSGPY 176 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 VK L + GV + + KA +P++E K ++ Q+++D Y FV +V +R Sbjct: 177 FNVKEGLSRYGVQSDLLIAGKDKAPMNPYTEWTAKDREIRQEIIDYLYGQFVDVVVTNRP 236 Query: 199 -IPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQSIRKIK 250 + DK + + R+++ +A + G IDV +++V Q L A ++ ++ Sbjct: 237 LLTKDKLVSVLGARLYSPEKALEEGYIDVTNVTKQQVLQDLVADCKIENNYRVI 290 >gi|262376071|ref|ZP_06069302.1| signal peptide peptidase SppA, 36K type [Acinetobacter lwoffii SH145] gi|262309165|gb|EEY90297.1| signal peptide peptidase SppA, 36K type [Acinetobacter lwoffii SH145] Length = 320 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 105/261 (40%), Gaps = 13/261 (4%) Query: 32 EDNSPHVARIAIRGQIEDS--QELIERIERISRDDSA--TALIVSLSSPGGSAYAGEAIF 87 + + + + +G + S + L E I I A ++V L SPGG + Sbjct: 53 KKTNQKIYVLDFKGDMAASAVEGLREEITLILATAKAGRDRVVVRLESPGGMVHGYGLAA 112 Query: 88 RAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 + +++ + V ++AAS GY+++C +N I++A ++VGSIGV+ Q P L Sbjct: 113 AQLVRLREAGFHLTICVDKVAASGGYMMACIANEIISAPFAIVGSIGVVAQVPNFNRLLK 172 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 + + + K + F E + ++ + ++ F V + R P Sbjct: 173 DNKIDFELYTAGQYKRTVTMFGENTEEGKAKFEEELQQTHALFKHFVEKYR--PQLNIEK 230 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 ++ G W G +A + L+D + +E +L I K + L Sbjct: 231 VATGEHWYGRDALDLNLVDKLQTSDEYLLNLLTQH------DIYSIQTRKKPTLGEKLGL 284 Query: 267 SISSLLEDTIPLMKQTKVQGL 287 + + + IP + ++ L Sbjct: 285 QAAQIADSLIPTVMNNVMESL 305 >gi|297250560|ref|ZP_06864551.2| peptidase, S49 family [Neisseria polysaccharea ATCC 43768] gi|296838605|gb|EFH22543.1| peptidase, S49 family [Neisseria polysaccharea ATCC 43768] Length = 366 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 98/218 (44%), Gaps = 9/218 (4%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127 +++ L SPGG + +++++ R +T V ++AAS GY+++C ++ IV+A + Sbjct: 155 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 214 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 +VGS+GV+ + P + L K + + + + K + E K Q + ++ ++ Sbjct: 215 IVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 274 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F + VSE+R P ++ G W G +A + LID + +++ + + Sbjct: 275 LFKQFVSENR--PGLDIEKIATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 326 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ + + L + +E + + Sbjct: 327 QVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRAD 364 >gi|29839895|ref|NP_829001.1| protease IV, putative [Chlamydophila caviae GPIC] gi|29834242|gb|AAP04879.1| protease IV, putative [Chlamydophila caviae GPIC] Length = 332 Score = 87.4 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 66/294 (22%), Positives = 132/294 (44%), Gaps = 24/294 (8%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNS----------PHVARIAIRGQIEDS 50 + + ++L V L+ ++ + P +A + ++ I S Sbjct: 16 LGLSFGVVLAFSIILGFVALSSGGGIQFVNMPNAKGEIKDLGKEAPIIAVLEMKDVIASS 75 Query: 51 QELIERIERI--SRDD-----SATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVIT 101 + + I+ + D LI+ + PGG + ++ I+ K + PV Sbjct: 76 RHTEKVIQEAIIALDSAPYKGRVKGLIIDMDCPGGEVFEIARVYSTIKFWKQCTKCPVYV 135 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYPYVKPFLDKLGVSIKSVKSSPM 160 V+ + AS GY ++CA++ I + +SL+GS+GVL Y VK L + GV + S Sbjct: 136 FVNGLCASGGYYVACAADKIYSTSSSLIGSVGVLSGPYFNVKEGLSRHGVQSDLLISGKD 195 Query: 161 KAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN-IPYDKTLVLSDGRIWTGAEAK 219 KA +P++E K ++ Q+++D Y FV +V +R + +K + + R+++ +A Sbjct: 196 KAPMNPYTEWTAKDREIRQEIIDYLYGQFVDIVVTNRPLLTKEKLVGVLGARLYSPEKAL 255 Query: 220 KVGLIDVV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 + G IDVV +++V + L A ++ ++ + W + + +S L Sbjct: 256 ETGYIDVVNATKQQVLEDLVAACDIENNYRVIGLG--SDGWLKKFMSSAANSPL 307 >gi|90021661|ref|YP_527488.1| putative periplasmic protease [Saccharophagus degradans 2-40] gi|89951261|gb|ABD81276.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Saccharophagus degradans 2-40] Length = 365 Score = 87.4 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 59/260 (22%), Positives = 110/260 (42%), Gaps = 16/260 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ-----ELIERIERISRDDSATALIVSLSSPGGSAYA 82 + + P V G I+ S+ E+I I I++ + ++V L SPGG + Sbjct: 108 ADSNTEAKPRVFVTHFDGDIKASETQELREVITAILSIAK--PSDEVVVCLESPGGMVHG 165 Query: 83 GEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++ + +T ++AAS GY+++C +N IVAA +++GSIGV+ Q P Sbjct: 166 YGLAASQLARITEKNIPLTVCVDKVAASGGYMMACVANKIVAAPFAVIGSIGVVAQIPNF 225 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K V + + + K + F E K Q + ++ ++ F + + R Sbjct: 226 HRLLKKHDVDYEMLTAGEYKRTLTMFGENTEKGRQKFVEDLEETHDLFKDFIRQHR--SV 283 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G IW G +A + LID V + L+ + + + N Sbjct: 284 VDVDKVATGEIWFGTKALEEKLIDAVQTSD---AYLFDR---KDSADLFEINYVHKRTVM 337 Query: 262 DLKNLSISSLLEDTIPLMKQ 281 + ++ + LE I + Q Sbjct: 338 EKLGINAEASLERVIGKLWQ 357 >gi|304386997|ref|ZP_07369255.1| protease SohB [Neisseria meningitidis ATCC 13091] gi|304338954|gb|EFM05050.1| protease SohB [Neisseria meningitidis ATCC 13091] Length = 366 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 97/218 (44%), Gaps = 9/218 (4%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127 +++ L SPGG + +++++ R +T V ++AAS GY+++C ++ I +A + Sbjct: 155 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIASAPFA 214 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 +VGS+GV+ + P + L K + + + + K + E K Q + ++ ++ Sbjct: 215 IVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 274 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F + VSE+R P ++ G W G +A + LID + +++ + + Sbjct: 275 LFKQFVSENR--PQLDIEEVATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 326 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ + + L + +E + + Sbjct: 327 QVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRAD 364 >gi|229520509|ref|ZP_04409934.1| SohB protein peptidase U7 family [Vibrio cholerae TM 11079-80] gi|229342607|gb|EEO07600.1| SohB protein peptidase U7 family [Vibrio cholerae TM 11079-80] Length = 356 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 107/267 (40%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 PH+ + G I +E + I +++ +++ L + GG + Sbjct: 100 GELESKRDPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 157 Query: 83 GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 158 YGLASSQLDRLKAAGLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 217 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + + + + K + F E KA + + ++ ++ F + E R P Sbjct: 218 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHQLFKDFIREHR--PA 275 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +AK +GL+D + +++ + + + K Sbjct: 276 LDLDKVATGEHWFGTQAKALGLVDEIQTSDDLIVAACK----SKTVLLLRYTQKKK--LA 329 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D ++ + + + L Sbjct: 330 DKLAGVAGDAADNVLLKLFSRGQRPLV 356 >gi|110834091|ref|YP_692950.1| putative periplasmic protease [Alcanivorax borkumensis SK2] gi|110647202|emb|CAL16678.1| putative protease sohB [Alcanivorax borkumensis SK2] Length = 350 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 116/257 (45%), Gaps = 18/257 (7%) Query: 36 PHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 P + + G ++ S E+ ++ ++DD ++V L SPGG ++ Sbjct: 101 PRLFVLDFNGDVQASDVDHMRREITAILQVATQDDE---VLVRLESPGGLVHSYGLASSQ 157 Query: 90 IQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 +++++N+ +T V ++AAS GY+++C ++ IVAA +++GSIGV+ Q P L K Sbjct: 158 LRRIRNQGIKLTVAVDQVAASGGYMMACIADRIVAAPFAIIGSIGVVAQIPNFHRLLKKN 217 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 + ++ + + K + E K Q+ ++ ++ F V ++R ++ Sbjct: 218 DIDVELMTAGEYKRTMTMLGENTEKGRAKFQEELEETHQLFKGFVRDNR--RGLDLDKVA 275 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 G W G++AK++GL+D + +E L + D + W + + S+ Sbjct: 276 TGEHWFGSQAKELGLVDEIMTSDE----LLQVRKDSQTLYLVQWEAKRK--LGEKLGFSL 329 Query: 269 SSLLEDTIPLMKQTKVQ 285 ++ + Q Sbjct: 330 EAMAHRVLEKFWHRGSQ 346 >gi|307320186|ref|ZP_07599606.1| peptidase S49 [Sinorhizobium meliloti AK83] gi|306894232|gb|EFN24998.1| peptidase S49 [Sinorhizobium meliloti AK83] Length = 301 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 89/213 (41%), Gaps = 14/213 (6%) Query: 38 VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 +A I I G + + + ++ D A++ + S GG Sbjct: 79 IALIEIEGSLVNKGKWIGKSCGMTSYEGISAQVRDCIDRDDIKAVVFEVDSYGGEVTGAF 138 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I ++ KP I + + A SAGYL++ +V +T + GSIGV+ + + + Sbjct: 139 DCAEQIFELSQVKPTIAVLTDHACSAGYLLASPCRQLVIPQTGICGSIGVISMHVDMSAW 198 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K G+ + +K+ KA+ +P+ + +Q ++ F V+ R + Sbjct: 199 LAKEGLKVTILKAGEHKADFNPYEAIPDDVLQQELAELEELRVEFAATVARYRAGRLTQQ 258 Query: 205 LVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 L ++ R++ G +A GL D V +V ++ Sbjct: 259 SALATEARVYRGQKAVDAGLADAVARPSQVLEA 291 >gi|218709038|ref|YP_002416659.1| putative periplasmic protease [Vibrio splendidus LGP32] gi|218322057|emb|CAV18116.1| sohB protein, peptidase U7 family [Vibrio splendidus LGP32] Length = 355 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 112/263 (42%), Gaps = 17/263 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 PH+ + G I+ +E+ + D +++ L S GG + Sbjct: 99 GELDSKREPHLFVLDFNGSIDAKEVASLREEVTAVLAVAREGDE---VLLKLESGGGMVH 155 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 156 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIAQLPN 215 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E + KA + ++ ++ ++ F + + R P Sbjct: 216 FNKLLKKHDIEFEQLTAGEYKRTLTMFGENSDKAREKFKEELEETHGLFKDFIRDHR--P 273 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +A ++GL+D + +++ + +I + K Sbjct: 274 ALDLEKVATGEHWFGTQAHELGLVDEISTSDDLVVAACKDKTVLAIHYV-----QKKKLS 328 Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283 L ++ S + L+++ + Sbjct: 329 DKLAGVAGKSADSVLMKLIERGQ 351 >gi|84393898|ref|ZP_00992641.1| sohB protein, peptidase U7 family [Vibrio splendidus 12B01] gi|84375495|gb|EAP92399.1| sohB protein, peptidase U7 family [Vibrio splendidus 12B01] Length = 349 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 112/263 (42%), Gaps = 17/263 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 PH+ + G I+ +E+ + D +++ L S GG + Sbjct: 93 GELDSKREPHLFVLDFNGSIDAKEVASLREEVTAVLAVAREGDE---VLLKLESGGGMVH 149 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 150 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIAQLPN 209 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E + KA + ++ ++ ++ F + + R P Sbjct: 210 FNKLLKKHDIEFEQLTAGEYKRTLTMFGENSDKAREKFKEELEETHGLFKDFIRDHR--P 267 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +A ++GL+D + +++ + +I + K Sbjct: 268 ALDLEKVATGEHWFGTQAHELGLVDEISTSDDLVVAACKDKTVLAIHYV-----QKKKLS 322 Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283 L ++ S + L+++ + Sbjct: 323 DKLAGVAGKSADSVLMKLIERGQ 345 >gi|27366259|ref|NP_761787.1| putative inner membrane peptidase [Vibrio vulnificus CMCP6] gi|37679482|ref|NP_934091.1| putative periplasmic protease [Vibrio vulnificus YJ016] gi|320156768|ref|YP_004189147.1| putative protease sohB [Vibrio vulnificus MO6-24/O] gi|27362460|gb|AAO11314.1| SohB protein, peptidase U7 family [Vibrio vulnificus CMCP6] gi|37198226|dbj|BAC94062.1| periplasmic serine protease [Vibrio vulnificus YJ016] gi|319932080|gb|ADV86944.1| possible protease sohB [Vibrio vulnificus MO6-24/O] Length = 353 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 107/256 (41%), Gaps = 17/256 (6%) Query: 35 SPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 PH+ + G I+ +E+ + D +++ L S GG + Sbjct: 104 EPHLFVLDFNGSIDAKEVKSLREEITAILAVAGEGDE---VLLRLESGGGMVHGYGLASS 160 Query: 89 AIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P L K Sbjct: 161 QLDRIKAAGLPLTIAVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPNFNKLLKK 220 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 + + + + K + F E KA + + ++ ++ F + E R P + + Sbjct: 221 HDIEFEQMTAGEYKRTLTMFGENTDKAREKFKQELEETHDLFKDFIRERR--PELELEKV 278 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G W G +A +GL+D + +++ + ++ + K L + Sbjct: 279 ATGEHWFGTQAHALGLVDDIATSDDLIVAACKEKTVLAVHYV-----QKKKLADKLAGSA 333 Query: 268 ISSLLEDTIPLMKQTK 283 + L ++ + Sbjct: 334 AKVADSVILKLAERGQ 349 >gi|145631779|ref|ZP_01787539.1| protease IV [Haemophilus influenzae R3021] gi|144982569|gb|EDJ90119.1| protease IV [Haemophilus influenzae R3021] Length = 329 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 57/287 (19%), Positives = 110/287 (38%), Gaps = 44/287 (15%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52 ++ + V L V L V S+SS + + S + + G + D+++ Sbjct: 14 FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTALTSEGALLLNLDGYLADNRDETLRWQD 73 Query: 53 ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93 ++ I++ D L++ L+ G A + I AI + Sbjct: 74 ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISQF 133 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 KN + + + Y ++ ++ I V G+ + Y K LDKL V+ Sbjct: 134 KNAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF ++++ +A MQ + ++ +V VSE+RNI D L + + Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDNI--LPNAK 251 Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + A++ GL+ V + ++ + L AL S K Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKKLTALFGKGSDGK 298 >gi|15677437|ref|NP_274593.1| putative periplasmic protease [Neisseria meningitidis MC58] gi|7226836|gb|AAF41940.1| putative protease [Neisseria meningitidis MC58] Length = 367 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 97/218 (44%), Gaps = 9/218 (4%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127 +++ L SPGG + +++++ R +T V ++AAS GY+++C ++ I +A + Sbjct: 156 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIASAPFA 215 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 +VGS+GV+ + P + L K + + + + K + E K Q + ++ ++ Sbjct: 216 IVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 275 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F + VSE+R P ++ G W G +A + LID + +++ + + Sbjct: 276 LFKQFVSENR--PQLDIEEVATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 327 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ + + L + +E + + Sbjct: 328 QVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRAD 365 >gi|153871746|ref|ZP_02000840.1| Peptidase S49, SppA [Beggiatoa sp. PS] gi|152071791|gb|EDN69163.1| Peptidase S49, SppA [Beggiatoa sp. PS] Length = 211 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 17/202 (8%) Query: 81 YAGEAIFRAIQKVKNRKPVI---TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 I I++++ + P I ++ AS GY I+ A++ I A + S+VGSIGVL Sbjct: 1 MQAGYINDEIRRLRKKHPEIPVYAVATDICASGGYYIAAAADEIYADKASVVGSIGVLMD 60 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 ++KLGV + + + K PFS + V+ ++ V++ + F++ V E R Sbjct: 61 GFGFVETMNKLGVERRLLTAGEHKGFLDPFSPMKEDDVEHIKTVLNDIHVQFIKQVKEGR 120 Query: 198 NIPYD--------KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 +L G +WTG +A ++GL+D +G V + + KI Sbjct: 121 EKSLTNKGKLELLDNPILFSGLVWTGEQALELGLVDGLGSSSYVAREIIK------AEKI 174 Query: 250 KDWNPPKNYWFCDLKNLSISSL 271 KD+ P NY + L + Sbjct: 175 KDFTPKPNYLDRFAERLGATMA 196 >gi|56707601|ref|YP_169497.1| putative periplasmic protease [Francisella tularensis subsp. tularensis SCHU S4] gi|110670072|ref|YP_666629.1| putative periplasmic protease [Francisella tularensis subsp. tularensis FSC198] gi|224456672|ref|ZP_03665145.1| putative periplasmic protease [Francisella tularensis subsp. tularensis MA00-2987] gi|254370119|ref|ZP_04986125.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874422|ref|ZP_05247132.1| peptidase S49 family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|56604093|emb|CAG45092.1| peptidase family S49 protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110320405|emb|CAL08475.1| peptidase family S49 protein [Francisella tularensis subsp. tularensis FSC198] gi|151568363|gb|EDN34017.1| hypothetical protein FTBG_01222 [Francisella tularensis subsp. tularensis FSC033] gi|254840421|gb|EET18857.1| peptidase S49 family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282158759|gb|ADA78150.1| putative periplasmic protease [Francisella tularensis subsp. tularensis NE061598] Length = 339 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 104/253 (41%), Gaps = 14/253 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAY 81 + + I +G I+ SQ E+ + + +D +IV + SPGG Sbjct: 86 DKQDDKPKQKIFVINFKGDIDASQVENLRNEVSAILAVANTEDE---IIVRIDSPGGVVN 142 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPY 140 +++++ +T + A++G + A + I+AA ++VGSIGV+ P Sbjct: 143 GYGFAAAQLERIRQAGINLTVCIDQVAASGGYMMSAVAHKIIAAPFAIVGSIGVVGTIPN 202 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 ++ L+K G++++ S K + + + ++S + F + + R P Sbjct: 203 IRELLEKNGINVEMHTSGEYKRTLTTVGVNTEEGRNKFKQDLESIHQLFKKHILVYR--P 260 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +A ++GL+D + ++ L L ++ ++ + + Sbjct: 261 SLDIDKVATGEYWFGKDALELGLVDKIQTYDDYLIDL--LKKQHNVYEVSYVIKKEKGFL 318 Query: 261 CDLKNLSISSLLE 273 ++ ++ Sbjct: 319 RSKFSMLKRAITN 331 >gi|148260959|ref|YP_001235086.1| peptidase S49 [Acidiphilium cryptum JF-5] gi|146402640|gb|ABQ31167.1| peptidase S49 [Acidiphilium cryptum JF-5] Length = 265 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 63/255 (24%), Positives = 98/255 (38%), Gaps = 15/255 (5%) Query: 34 NSPHVARIAIRGQI------EDSQELIERIERISRDDS--ATALIVSLSSPGGSAYAGEA 85 + P V I + G I + + I+R LI+++ SPGGS + Sbjct: 8 SRPCVPVIRLAGLISPREGAVNLERFAPAIDRGFDLAKGGTKLLILAIESPGGSPVQSDL 67 Query: 86 IFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I R I++ V+ + ++ AS GY I+CA + I A S+VGSIGV+ + Sbjct: 68 IGRHIRRKAEETGVRVLAVIGDVGASGGYWIACAGDEIFANPMSIVGSIGVVGGGFGLHD 127 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 + + G+ + V + K PFS P Q ++D + F V E R Sbjct: 128 LIRRFGIERRIVTAGANKLRNDPFSPERPGDAAFNQALLDDIHDAFKAWVRERRGAALKG 187 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 + DG G+ AK GLID G + G K P + + L Sbjct: 188 DDTVFDGSYMLGSAAKARGLIDGFGDVRGLIT-----GRCGPRAKPVFLGPKRKFSLLRL 242 Query: 264 KNLSISSLLEDTIPL 278 S L + + Sbjct: 243 FGRSSLIELANAMEA 257 >gi|153213542|ref|ZP_01948832.1| sohB protein, peptidase U7 family [Vibrio cholerae 1587] gi|124115878|gb|EAY34698.1| sohB protein, peptidase U7 family [Vibrio cholerae 1587] Length = 356 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 108/267 (40%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 PH+ + +G I +E + I +++ +++ L + GG + Sbjct: 100 GELESKRDPHLFVLDFQGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 157 Query: 83 GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 158 YGLASSQLDRLKAAGLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 217 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + + + + K + F E KA + + ++ ++ F + E R P Sbjct: 218 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHQLFKDFIREHR--PA 275 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +AK +GL+D + +++ + + + K Sbjct: 276 LDLDKVATGEHWFGTQAKALGLVDEIQTSDDLIVAACK----SKTVLLLRYTQKKK--LA 329 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D ++ + + + L Sbjct: 330 DKLAGVAGDAADNVLLKLISRGQRPLV 356 >gi|28898806|ref|NP_798411.1| putative periplasmic protease [Vibrio parahaemolyticus RIMD 2210633] gi|28807025|dbj|BAC60295.1| sohB protein, peptidase U7 family [Vibrio parahaemolyticus RIMD 2210633] Length = 353 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 53/263 (20%), Positives = 110/263 (41%), Gaps = 17/263 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 S PH+ + G I+ +E+ + D +++ L S GG + Sbjct: 97 GSLDSKREPHLFVLDFNGSIDAKEVGSLREEITAILAVAREGDE---VLLRLESGGGMVH 153 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 154 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPN 213 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E KA + ++ ++ F + E R P Sbjct: 214 FNKLLKKHDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHVLFKDFIRERR--P 271 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 + ++ G W G +AK++GL+D + +++ + ++ + K Sbjct: 272 SLELEKVATGEHWFGTQAKELGLVDEISTSDDLVVAACKEKTVLAVHYV-----QKKKLA 326 Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283 L ++ + L ++ + Sbjct: 327 DKLAGVASKVADSVVLKLAERGQ 349 >gi|86148848|ref|ZP_01067109.1| sohB protein, peptidase U7 family protein [Vibrio sp. MED222] gi|85833365|gb|EAQ51562.1| sohB protein, peptidase U7 family protein [Vibrio sp. MED222] Length = 353 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 112/263 (42%), Gaps = 17/263 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 PH+ + G I+ +E+ + D +++ L S GG + Sbjct: 97 GELDSKREPHLFVLDFNGSIDAKEVASLREEVTAVLAVAREGDE---VLLKLESGGGMVH 153 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 154 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIAQLPN 213 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E + KA + ++ ++ ++ F + + R P Sbjct: 214 FNKLLKKHDIEFEQLTAGEYKRTLTMFGENSDKAREKFKEELEETHGLFKDFIRDHR--P 271 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +A ++GL+D + +++ + +I + K Sbjct: 272 ALDLEKVATGEHWFGTQAHELGLVDEISTSDDLVVAACKDKTVLAIHYV-----QKKKLS 326 Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283 L ++ S + L+++ + Sbjct: 327 DKLAGVAGKSADSVLMKLIERGQ 349 >gi|238754974|ref|ZP_04616323.1| protease sohB [Yersinia ruckeri ATCC 29473] gi|238706833|gb|EEP99201.1| protease sohB [Yersinia ruckeri ATCC 29473] Length = 348 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 51/268 (19%), Positives = 116/268 (43%), Gaps = 14/268 (5%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER--ISRDDSATALIVSLSSPGGSAY 81 + + + P + + +G I+ + L E I +++ L SPGG + Sbjct: 90 AKAGAIAAVKPCLYVLDFKGSIDAHEVTSLREEISAVLAVATPQ-DEVLLRLESPGGVVH 148 Query: 82 AGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 ++++++ +T V ++AAS GY+++C ++ IV+A +++GSIGV+ Q P Sbjct: 149 GYGLAASQLERLRHAGVRLTVAVDKVAASGGYMMACVADRIVSAPFAIIGSIGVVAQIPN 208 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + ++ + K + F E + + ++ ++ ++ F + V + R P Sbjct: 209 FHRLLKKNDIDLELHTAGEFKRTLTLFGENTEQGREKFREDLNETHKLFKQFVKQQR--P 266 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +AK+ GL+D +G +++ + + ++ + Sbjct: 267 SLDIDAVATGEHWFGTQAKEKGLVDAIGTSDDLL--IAEM----ENHEVISVRYSRRKRL 320 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S + ++ + Q + L Sbjct: 321 MDRFTGSAAESIDRLLLRWWQRGEKPLL 348 >gi|134302463|ref|YP_001122433.1| putative periplasmic protease [Francisella tularensis subsp. tularensis WY96-3418] gi|134050240|gb|ABO47311.1| peptidase, S49 (protease IV) family protein [Francisella tularensis subsp. tularensis WY96-3418] Length = 338 Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 45/252 (17%), Positives = 104/252 (41%), Gaps = 14/252 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYA 82 + + I +G I+ SQ E+ + + +D +IV + SPGG Sbjct: 86 DKQDKPKQKIFVINFKGDIDASQVENLRNEVSAILAVANTEDE---IIVRIDSPGGVVNG 142 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYV 141 +++++ +T + A++G + A + I+AA ++VGSIGV+ P + Sbjct: 143 YGFAAAQLERIRQAGINLTVCIDQVAASGGYMMSAVAHKIIAAPFAIVGSIGVVGTIPNI 202 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + L+K G++++ S K + + + ++S + F + + R P Sbjct: 203 RELLEKNGINVEMHTSGEYKRTLTTVGVNTEEGRNKFKQDLESIHQLFKKHILVYR--PS 260 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +A ++GL+D + ++ L L ++ ++ + + Sbjct: 261 LDIDKVATGEYWFGKDALELGLVDKIQTYDDYLIDL--LKKQHNVYEVSYVIKKEKGFLR 318 Query: 262 DLKNLSISSLLE 273 ++ ++ Sbjct: 319 SKFSMLKRAITN 330 >gi|238798377|ref|ZP_04641859.1| protease sohB [Yersinia mollaretii ATCC 43969] gi|238717762|gb|EEQ09596.1| protease sohB [Yersinia mollaretii ATCC 43969] Length = 348 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 51/270 (18%), Positives = 117/270 (43%), Gaps = 18/270 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGS 79 + + V P + I +G I+ +E+ + + D +++ L SPGG Sbjct: 90 AKAGAVAAIKPCLYVIDFKGSIDAHEVTSLREEISAVLAVATAQDE---VLLRLESPGGV 146 Query: 80 AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + +++++++ +T V ++AAS GY+++C ++ I++A +++GSIGV+ Q Sbjct: 147 VHGYGLAASQLERLRHKGIRLTVAVDKVAASGGYMMACVADRIISAPFAIIGSIGVVAQI 206 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P L K + ++ + K + F E + + ++ ++ ++ F + V + R Sbjct: 207 PNFHRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVQQQR- 265 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P ++ G W G +AK GL+D +G +++ + + ++ + Sbjct: 266 -PSLDIDAVATGEHWFGTQAKDKGLVDAIGTSDDLL--IAEM----DNHEVIGVRYSRRK 318 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S + + + Q + L Sbjct: 319 RLMDRFTGSAAESADRLLLRWWQRGEKPLL 348 >gi|186476640|ref|YP_001858110.1| peptidase S49 [Burkholderia phymatum STM815] gi|184193099|gb|ACC71064.1| peptidase S49 [Burkholderia phymatum STM815] Length = 292 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 14/218 (6%) Query: 38 VARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 VA I + G + + D A+++S+ SPGG Sbjct: 76 VAVIDVSGTLVQKSSNLRPYSGMLGYNAIRHNFLAALDDKKVKAIVLSIDSPGGEVAGCF 135 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + I + ++ KP + ++E SA Y ++ A I T GS+GV+ + Sbjct: 136 DLADLIYESRSVKPTLAILNESGYSAAYALASACEQITVPRTGGTGSVGVICMHVDQSKA 195 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 +DK G+++ +K KA+ + F+ ++ +A+ Q VD FV+ V+ +RN+ D Sbjct: 196 IDKAGLTVTIIKYGDRKADGNQFNPLSKEALDRYQAEVDEMGELFVQTVARNRNLSADVV 255 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + + GA ++G D V +E ++SL Sbjct: 256 RK-TQATTFLGAAGVEIGFADAVMAPDEAFRSLLKELG 292 >gi|88859935|ref|ZP_01134574.1| protease (may metabolize cleaved signal peptides) [Pseudoalteromonas tunicata D2] gi|88817929|gb|EAR27745.1| protease (may metabolize cleaved signal peptides) [Pseudoalteromonas tunicata D2] Length = 337 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 55/261 (21%), Positives = 107/261 (40%), Gaps = 13/261 (4%) Query: 30 HVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSA--TALIVSLSSPGGSAYAGEA 85 D V + G I + EL E I I A +++ L S GG + Sbjct: 82 QKNDVKNKVYVLDFNGSIDAREVDELREEITAILTVAQAGKDQVLLRLESGGGVVHGYGL 141 Query: 86 IFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 ++++KN +T ++AAS GY+++C ++ +VAA +++GSIGV+ Q P Sbjct: 142 AASQLERIKNAGINLTVCVDKVAASGGYMMACVADKVVAAPFAIIGSIGVIAQIPNFNKI 201 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K + + + + K + F E +A ++ + ++ F + VS R P Sbjct: 202 LKKNDIEFEQITAGEFKRTLTLFGENTDQARDKFREEIQQTHELFKQFVSLKR--PTLDL 259 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 ++ G W ++A + GL+D + ++V + ++ K Sbjct: 260 TEVATGEHWFASQAIEKGLVDEIATSDDVLLTFNQQSQIYK----VKFSHKKTLADKFSI 315 Query: 265 NL--SISSLLEDTIPLMKQTK 283 L I + + +++ K Sbjct: 316 GLTKGIERSILSILSTLQRLK 336 >gi|329942445|ref|ZP_08291255.1| peptidase S49 family protein [Chlamydophila psittaci Cal10] gi|332287086|ref|YP_004421987.1| putative exported protease [Chlamydophila psittaci 6BC] gi|325506439|gb|ADZ18077.1| putative exported protease [Chlamydophila psittaci 6BC] gi|328815355|gb|EGF85343.1| peptidase S49 family protein [Chlamydophila psittaci Cal10] gi|328914320|gb|AEB55153.1| peptidase, U7 family protein, putative [Chlamydophila psittaci 6BC] Length = 333 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 111/234 (47%), Gaps = 12/234 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQELIERIERISR-------DDSATALIVSLSSPGGSAY 81 + ++P +A + ++ I S+ + I+ D +I+ + PGG + Sbjct: 55 KDIGKDAPIIAVLEMKDVIASSKHTAKIIQDAITTLDSAPYKDRVKGIIIDMDCPGGEVF 114 Query: 82 AGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQY 138 ++ IQ K R V+ + AS GY ++CA++ I + +SL+GS+GVL Y Sbjct: 115 EISRVYSIIQFWKQRTQCPVYVFVNGLCASGGYYVACAADKIYSTSSSLIGSVGVLSGPY 174 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 VK L + GV + + KA +P++E K ++ Q+++D Y FV +V +R Sbjct: 175 FNVKEGLSRYGVQSDLLIAGKDKAPMNPYTEWTAKDREIRQEIIDYLYGQFVDVVVTNRP 234 Query: 199 I-PYDKTLVLSDGRIWTGAEAKKVGLID-VVGGQEEVWQSLYALGVDQSIRKIK 250 DK + + R+++ +A + G ID +++V Q L A ++ ++ Sbjct: 235 RLTKDKLVSVLGARLYSPEKALEEGYIDVANVTKQQVLQDLVADCKIENNYRVI 288 >gi|153802311|ref|ZP_01956897.1| sohB protein, peptidase U7 family [Vibrio cholerae MZO-3] gi|124122136|gb|EAY40879.1| sohB protein, peptidase U7 family [Vibrio cholerae MZO-3] Length = 323 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 107/267 (40%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 PH+ + G I +E + I +++ +++ L + GG + Sbjct: 67 GELESKRDPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 124 Query: 83 GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 125 YGLASSQLDRLKAAGLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 184 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + + + + K + F E KA + + ++ ++ F + E R P Sbjct: 185 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHQLFKDFIREHR--PA 242 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +AK +GL+D + +++ + + + K Sbjct: 243 LDLDKVATGEHWFGTQAKALGLVDEIQTSDDLIVAACK----SKTVLLLRYTQKKK--LA 296 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D ++ + + + L Sbjct: 297 DKLAGVAGDAADNVLLKLISRGQRPLV 323 >gi|302187752|ref|ZP_07264425.1| putative periplasmic protease [Pseudomonas syringae pv. syringae 642] gi|330953371|gb|EGH53631.1| putative inner membrane peptidase [Pseudomonas syringae Cit 7] Length = 340 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 50/271 (18%), Positives = 102/271 (37%), Gaps = 15/271 (5%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGG 78 + V + G I+ S + I + ++ D +++ L S GG Sbjct: 79 ALKKEKKQAEPKARVYVLDFDGDIKASATESMRHEITALLTLATDKD--EVVLRLESGGG 136 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 ++ + +++ +T ++AAS GY+++C N I++A +++GSIGV+ Q Sbjct: 137 MVHSYGLASSQLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQ 196 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P V L K + + + + K + F E K + Q +D ++ F V+ R Sbjct: 197 LPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASYR 256 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 P ++ G +W G A L+D + +E + + + Sbjct: 257 --PQLSIDEVATGEVWLGMAAVDKLLVDELKTSDEYLAERAKDADVFHLHYV-----QRK 309 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + + +S + + Q W Sbjct: 310 SLQERMGMAAATSADQLATKWWGRLTQQRFW 340 >gi|330967647|gb|EGH67907.1| putative inner membrane peptidase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 340 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 50/271 (18%), Positives = 103/271 (38%), Gaps = 15/271 (5%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGG 78 + + V + G I+ S + I + ++ D +++ L S GG Sbjct: 79 ALKKDKKLAEPKARVYVLDFDGDIKASATESMRHEITALLTLATDKD--EVVLRLESGGG 136 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 ++ + +++ +T ++AAS GY+++C N I++A +++GSIGV+ Q Sbjct: 137 MVHSYGLASSQLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQ 196 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P V L K + + + + K + F E K + Q +D ++ F V+ R Sbjct: 197 LPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASYR 256 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 P ++ G +W G A L+D + +E + + + Sbjct: 257 --PQLSIDEVATGEVWLGMAAVDKLLVDELKTSDEYLAERAKQADVFHLHYV-----QRK 309 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + + +S + + Q W Sbjct: 310 SLQERMGMAAATSADQLATKWWGRLTQQRFW 340 >gi|145635462|ref|ZP_01791163.1| predicted inner membrane peptidase [Haemophilus influenzae PittAA] gi|145267336|gb|EDK07339.1| predicted inner membrane peptidase [Haemophilus influenzae PittAA] Length = 353 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 7/224 (3%) Query: 38 VARIAIRGQIEDSQE--LIERIERISRDDSATA-LIVSLSSPGGSAYAGEAIFRAIQKVK 94 V + G I S+ L E I I +++ L SPGG + + ++K Sbjct: 106 VYVLDFCGDISASETTALREEISAILNVAKPKDEVLLRLESPGGIVHNYGFAASQLSRLK 165 Query: 95 NRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + +T V ++AAS GY+++C ++ IV+A +++GSIGV+ Q P V L K V + Sbjct: 166 QKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDVDVD 225 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 + + K + E K Q Q ++ ++ F + VS++R ++ G W Sbjct: 226 VMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATGEHW 283 Query: 214 TGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256 G +A + L+D + +++ + + V ++K K Sbjct: 284 FGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKK 327 >gi|77459336|ref|YP_348843.1| putative periplasmic protease [Pseudomonas fluorescens Pf0-1] gi|77383339|gb|ABA74852.1| inner membrane peptidase. Serine peptidase. MEROPS family S49 [Pseudomonas fluorescens Pf0-1] Length = 340 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 103/249 (41%), Gaps = 12/249 (4%) Query: 32 EDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAGEAIFR 88 D P V + G I+ S + L I + + +++ L S GG ++ Sbjct: 87 PDAKPRVFVLDFDGDIKASATESLRHEITALLTLATPKDEVVLRLESGGGMVHSYGLASS 146 Query: 89 AIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + +++ +T ++AAS GY+++C I++A +++GSIGV+ Q P V L K Sbjct: 147 QLARIREAGVPLTVCIDKVAASGGYMMACIGEKIISAPFAILGSIGVVAQLPNVNRLLKK 206 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 + + + + K + F E K + Q+ +D ++ F V+ R P + Sbjct: 207 HDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLDITHQLFKNFVARYR--PQLAIDEV 264 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G +W G A + L+D + +E ++ + + + ++ Sbjct: 265 ATGEVWLGIAALEKQLVDELKTSDEYLAERAKQS------EVYHLHYAERKSLQERIGMA 318 Query: 268 ISSLLEDTI 276 S ++ + Sbjct: 319 ASGSVDRVL 327 >gi|89256882|ref|YP_514244.1| putative periplasmic protease [Francisella tularensis subsp. holarctica LVS] gi|115315261|ref|YP_763984.1| putative periplasmic protease [Francisella tularensis subsp. holarctica OSU18] gi|156503057|ref|YP_001429122.1| putative periplasmic protease [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009223|ref|ZP_02274154.1| peptidase family S49 protein [Francisella tularensis subsp. holarctica FSC200] gi|290953621|ref|ZP_06558242.1| putative periplasmic protease [Francisella tularensis subsp. holarctica URFT1] gi|295313054|ref|ZP_06803748.1| putative periplasmic protease [Francisella tularensis subsp. holarctica URFT1] gi|89144713|emb|CAJ80044.1| peptidase family S49 protein [Francisella tularensis subsp. holarctica LVS] gi|115130160|gb|ABI83347.1| S49 family SohB endopeptidase [Francisella tularensis subsp. holarctica OSU18] gi|156253660|gb|ABU62166.1| peptidase, S49 (protease IV) family protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 338 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 102/249 (40%), Gaps = 8/249 (3%) Query: 29 SHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAGEA 85 + + I +G I+ S + L + I + +IV + SPGG Sbjct: 86 DKQDKPKQKIFVINFKGDIDASQVENLRNEVSAILAVANIEDEIIVRIDSPGGVVNGYGF 145 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYVKPF 144 +++++ +T + A++G + A + I+AA ++VGSIGV+ P ++ Sbjct: 146 AAAQLERIRQVGINLTVCIDKVAASGGYMMSAVAHKIIAAPFAIVGSIGVVGTIPNIREL 205 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L+K G++++ S K + + + ++S + F + + R P Sbjct: 206 LEKNGINVEMHTSGEYKRTLTTVGVNTEEGRNKFKQDLESIHQLFKKHILVYR--PSLDI 263 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 ++ G W G +A ++GL+D + ++ L L ++ ++ + + Sbjct: 264 DKVATGEYWFGKDALELGLVDKIQTYDDYLIDL--LKKQHNVYEVSYVIKKEKGFLRSKF 321 Query: 265 NLSISSLLE 273 ++ ++ Sbjct: 322 SMLKRAITN 330 >gi|330445595|ref|ZP_08309247.1| peptidase S49 family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489786|dbj|GAA03744.1| peptidase S49 family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 353 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 97/239 (40%), Gaps = 12/239 (5%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80 S P + + G ++ + E+ + D +++ L + GG Sbjct: 96 NGSLDTSREPRLFVVDFHGSLDAREVSSLREEITAILAVAIEGDE---VLLRLETGGGMV 152 Query: 81 YAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + + ++K V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 HGYGLASSQLDRLKAAGIKLTVSVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQLP 212 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 L K + + + + K + F E KA + Q ++ ++ F V+ R Sbjct: 213 NFNKLLKKNDIDYEQITAGEFKRTLTMFGENTDKAREKFQTEIEETHSLFKNFVAFHR-- 270 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P ++ G W G +A +GL+D + +++ ++ ++ + Sbjct: 271 PDLDLEKVATGEHWFGQQALDLGLVDQISTSDDLITEACKDREVLKVKYVRRKKLAEKL 329 >gi|118497149|ref|YP_898199.1| putative periplasmic protease [Francisella tularensis subsp. novicida U112] gi|194323447|ref|ZP_03057224.1| peptidase, S49 (protease IV) family [Francisella tularensis subsp. novicida FTE] gi|208778942|ref|ZP_03246288.1| peptidase, S49 (protease IV) family [Francisella novicida FTG] gi|118423055|gb|ABK89445.1| peptidase family S49 protein [Francisella novicida U112] gi|194322302|gb|EDX19783.1| peptidase, S49 (protease IV) family [Francisella tularensis subsp. novicida FTE] gi|208744742|gb|EDZ91040.1| peptidase, S49 (protease IV) family [Francisella novicida FTG] Length = 338 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 45/252 (17%), Positives = 104/252 (41%), Gaps = 14/252 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYA 82 + + I +G I+ SQ E+ + + +D +IV + SPGG Sbjct: 86 DKQDKPKQKIFVINFKGDIDASQVENLRNEVSAILAVANTEDE---IIVRIDSPGGVVNG 142 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYV 141 +++++ +T + A++G + A + I+AA ++VGSIGV+ P + Sbjct: 143 YGFAAAQLERIRQAGINLTVCIDQVAASGGYMMSAVAHKIIAAPFAIVGSIGVVGTIPNI 202 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + L+K G++++ S K + + + ++S + F + + R P Sbjct: 203 RELLEKNGINVEMHTSGEYKRTLTTVGVNTEEGRNKFKQDLESIHQLFKKHILVYR--PS 260 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +A ++GL+D + ++ L L ++ ++ + + Sbjct: 261 LDIDKVATGEYWFGKDALELGLVDKIQTYDDYLIDL--LNKQHNVYEVSYVIKKEKGFLR 318 Query: 262 DLKNLSISSLLE 273 ++ ++ Sbjct: 319 SKFSMLKRAITN 330 >gi|254372516|ref|ZP_04988005.1| hypothetical protein FTCG_00078 [Francisella tularensis subsp. novicida GA99-3549] gi|254373978|ref|ZP_04989460.1| peptidase family S49 protein [Francisella novicida GA99-3548] gi|151570243|gb|EDN35897.1| hypothetical protein FTCG_00078 [Francisella novicida GA99-3549] gi|151571698|gb|EDN37352.1| peptidase family S49 protein [Francisella novicida GA99-3548] gi|328676618|gb|AEB27488.1| peptidase family S49 protein [Francisella cf. novicida Fx1] Length = 338 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 45/252 (17%), Positives = 104/252 (41%), Gaps = 14/252 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYA 82 + + I +G I+ SQ E+ + + +D +IV + SPGG Sbjct: 86 DKQDKPKQKIFVINFKGDIDASQVENLRNEVSAILAVANTEDE---IIVRIDSPGGVVNG 142 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYV 141 +++++ +T + A++G + A + I+AA ++VGSIGV+ P + Sbjct: 143 YGFAAAQLERIRQAGINLTVCIDQVAASGGYMMSAVAHKIIAAPFAIVGSIGVVGTIPNI 202 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + L+K G++++ S K + + + ++S + F + + R P Sbjct: 203 RELLEKNGINVEMHTSGEYKRTLTTVGVNTEEGRNKFKQDLESIHQLFKKHILVYR--PS 260 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +A ++GL+D + ++ L L ++ ++ + + Sbjct: 261 LDIDKVATGEYWFGKDALELGLVDKIQTYDDYLIDL--LNKQHNVYEVSYVIKKEKGFLR 318 Query: 262 DLKNLSISSLLE 273 ++ ++ Sbjct: 319 SKFSMLKRAITN 330 >gi|301170437|emb|CBW30044.1| predicted inner membrane peptidase [Haemophilus influenzae 10810] Length = 353 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 102/227 (44%), Gaps = 13/227 (5%) Query: 38 VARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 V + G I S+ E+ + +D +++ L SPGG + + Sbjct: 106 VYVLDFCGDISASETTALREEISAILNVAKSEDE---VLLRLESPGGIVHNYGFAASQLS 162 Query: 92 KVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++K + +T V ++AAS GY+++C ++ IV+A +++GSIGV+ Q P V L K V Sbjct: 163 RLKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDV 222 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 + + + K + E K Q Q ++ ++ F + VS++R ++ G Sbjct: 223 DVDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATG 280 Query: 211 RIWTGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256 W G +A + L+D + +++ + + V ++K K Sbjct: 281 EHWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKK 327 >gi|260582614|ref|ZP_05850403.1| periplasmic serine protease [Haemophilus influenzae NT127] gi|260094286|gb|EEW78185.1| periplasmic serine protease [Haemophilus influenzae NT127] Length = 353 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 102/227 (44%), Gaps = 13/227 (5%) Query: 38 VARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 V + G I S+ E+ + +D +++ L SPGG + + Sbjct: 106 VYVLDFCGDISASETTALREEISAILNVAKSEDE---VLLRLESPGGIVHNYGFAASQLS 162 Query: 92 KVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++K + +T V ++AAS GY+++C ++ IV+A +++GSIGV+ Q P V L K V Sbjct: 163 RLKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDV 222 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 + + + K + E K Q Q ++ ++ F + VS++R ++ G Sbjct: 223 DVDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATG 280 Query: 211 RIWTGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256 W G +A + L+D + +++ + + V ++K K Sbjct: 281 EHWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKK 327 >gi|229847303|ref|ZP_04467405.1| putative periplasmic protease [Haemophilus influenzae 7P49H1] gi|229809728|gb|EEP45452.1| putative periplasmic protease [Haemophilus influenzae 7P49H1] Length = 353 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 102/227 (44%), Gaps = 13/227 (5%) Query: 38 VARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 V + G I S+ E+ + +D +++ L SPGG + + Sbjct: 106 VYVLDFCGDISASETTALREEISAILNVAKSEDE---VLLRLESPGGIVHNYGFAASQLS 162 Query: 92 KVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++K + +T V ++AAS GY+++C ++ IV+A +++GSIGV+ Q P V L K V Sbjct: 163 RLKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDV 222 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 + + + K + E K Q Q ++ ++ F + VS++R ++ G Sbjct: 223 DVDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATG 280 Query: 211 RIWTGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256 W G +A + L+D + +++ + + V ++K K Sbjct: 281 EHWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKK 327 >gi|145641066|ref|ZP_01796647.1| predicted inner membrane peptidase [Haemophilus influenzae R3021] gi|145274227|gb|EDK14092.1| predicted inner membrane peptidase [Haemophilus influenzae 22.4-21] Length = 323 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 103/221 (46%), Gaps = 11/221 (4%) Query: 38 VARIAIRGQIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 V + G I S+ I I +++ + +++ L SPGG + + + Sbjct: 106 VYVLDFCGDISASETTALREEISAILNVAKPED--EVLLRLESPGGIVHNYGFAASQLSR 163 Query: 93 VKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 +K + +T V ++AAS GY+++C ++ IV+A +++GSIGV+ Q P V L K V Sbjct: 164 LKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDVD 223 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + + + K + E K Q Q ++ ++ F + VS++R ++ G Sbjct: 224 VDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATGE 281 Query: 212 IWTGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKD 251 W G +A + L+D + +++ + + V ++K+ Sbjct: 282 HWFGQQAFALQLVDEISTSDDLILEKMKEKQVLNVKYRLKN 322 >gi|261343650|ref|ZP_05971295.1| peptidase, S49 family [Providencia rustigianii DSM 4541] gi|282568033|gb|EFB73568.1| peptidase, S49 family [Providencia rustigianii DSM 4541] Length = 348 Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 104/234 (44%), Gaps = 6/234 (2%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEA 85 P + + +G ++ + L E I I D +++ L SPGG + Sbjct: 93 GQSSVKKPCLYVLDFKGSMDAREVSSLREEISAILAVADQQDEVLLRLESPGGLVHGYGL 152 Query: 86 IFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + ++K + V ++AAS GY+++C +N IVAA S++GSIGV+ Q P + Sbjct: 153 AASQLMRLKEKNISLTIAVDKVAASGGYMMACIANKIVAAPFSIIGSIGVVAQVPNIHRL 212 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K V ++ + K + E + + + ++S++ F V ++R P Sbjct: 213 LKKHDVDVELHTAGEYKRTLTMLGENTEQGRKKFVEDLNSTHELFKDFVHQNR--PSLDI 270 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ G W G +A + GL+D +G +++ + S+R + + + Sbjct: 271 AAVATGEYWYGTQALEKGLVDEIGVSDDLIINAIETKEIISVRYVLSKKMVERF 324 >gi|121587057|ref|ZP_01676834.1| sohB protein, peptidase U7 family [Vibrio cholerae 2740-80] gi|121726239|ref|ZP_01679529.1| sohB protein, peptidase U7 family [Vibrio cholerae V52] gi|153828141|ref|ZP_01980808.1| sohB protein, peptidase U7 family [Vibrio cholerae 623-39] gi|227081233|ref|YP_002809784.1| sohB protein, peptidase U7 family [Vibrio cholerae M66-2] gi|229505345|ref|ZP_04394855.1| SohB protein peptidase U7 family [Vibrio cholerae BX 330286] gi|229510985|ref|ZP_04400464.1| SohB protein peptidase U7 family [Vibrio cholerae B33] gi|229518106|ref|ZP_04407550.1| SohB protein peptidase U7 family [Vibrio cholerae RC9] gi|229608364|ref|YP_002879012.1| periplasmic protease [Vibrio cholerae MJ-1236] gi|254291486|ref|ZP_04962277.1| sohB protein, peptidase U7 family [Vibrio cholerae AM-19226] gi|254848189|ref|ZP_05237539.1| peptidase U7 family protein sohB [Vibrio cholerae MO10] gi|297578664|ref|ZP_06940592.1| sohB protein [Vibrio cholerae RC385] gi|298498832|ref|ZP_07008639.1| peptidase U7 family sohB protein [Vibrio cholerae MAK 757] gi|9655526|gb|AAF94219.1| sohB protein, peptidase U7 family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548692|gb|EAX58741.1| sohB protein, peptidase U7 family [Vibrio cholerae 2740-80] gi|121631185|gb|EAX63558.1| sohB protein, peptidase U7 family [Vibrio cholerae V52] gi|146316416|gb|ABQ20955.1| sohB protein, peptidase U7 family [Vibrio cholerae O395] gi|148876383|gb|EDL74518.1| sohB protein, peptidase U7 family [Vibrio cholerae 623-39] gi|150422550|gb|EDN14506.1| sohB protein, peptidase U7 family [Vibrio cholerae AM-19226] gi|227009121|gb|ACP05333.1| sohB protein, peptidase U7 family [Vibrio cholerae M66-2] gi|227012876|gb|ACP09086.1| sohB protein, peptidase U7 family [Vibrio cholerae O395] gi|229344821|gb|EEO09795.1| SohB protein peptidase U7 family [Vibrio cholerae RC9] gi|229350950|gb|EEO15891.1| SohB protein peptidase U7 family [Vibrio cholerae B33] gi|229357568|gb|EEO22485.1| SohB protein peptidase U7 family [Vibrio cholerae BX 330286] gi|229371019|gb|ACQ61442.1| SohB protein peptidase U7 family [Vibrio cholerae MJ-1236] gi|254843894|gb|EET22308.1| peptidase U7 family protein sohB [Vibrio cholerae MO10] gi|297536258|gb|EFH75091.1| sohB protein [Vibrio cholerae RC385] gi|297543165|gb|EFH79215.1| peptidase U7 family sohB protein [Vibrio cholerae MAK 757] Length = 356 Score = 86.2 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 107/267 (40%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 PH+ + G I +E + I +++ +++ L + GG + Sbjct: 100 GELESKRDPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 157 Query: 83 GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 158 YGLASSQLDRLKAAGLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 217 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + + + + K + F E KA + + ++ ++ F + E R P Sbjct: 218 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHQLFKDFIREHR--PA 275 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +AK +GL+D + +++ + + + K Sbjct: 276 LDLDKVATGEHWFGTQAKALGLVDEIQTSDDLIVAACK----SKTVLLLRYTQKKK--LA 329 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D ++ + + + L Sbjct: 330 DKLAGVAGDAADNVLLKLISRGQRPLV 356 >gi|308187005|ref|YP_003931136.1| protease [Pantoea vagans C9-1] gi|308057515|gb|ADO09687.1| putative protease [Pantoea vagans C9-1] Length = 348 Score = 86.2 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 114/264 (43%), Gaps = 12/264 (4%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGEA 85 + P + + +G ++ + L E I ++ +++ L SPGG + Sbjct: 93 GQTKSVKPTLYVLDFKGSMDAGEVSSLREEISAVLAVKQPGDEVLLRLESPGGVVHGYGL 152 Query: 86 IFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 +Q++++ IT V ++AAS GY+++C ++ IVAA S++GSIGV+ Q P Sbjct: 153 AASQLQRLRDADLRITAAVDKVAASGGYMMACVADRIVAAPFSIIGSIGVVAQIPNFNRL 212 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L + + ++ + K + F E + + Q+ +D ++ F + V + R P Sbjct: 213 LKRNDIDVELHTAGQYKRTLTLFGENTEEGREKFQEDLDETHLLFKQFVHQMR--PTLDI 270 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 ++ G W G +A +GLID +G +++ + + + D Sbjct: 271 DRVATGEHWYGRQALDLGLIDEIGTSDDLI------IRQMDQFSVLGVHYARRRKMMDRF 324 Query: 265 NLSISSLLEDTIPLMKQTKVQGLW 288 S S+ E + + Q + L Sbjct: 325 TQSAGSVAERLLLKLWQRGEKPLL 348 >gi|255020331|ref|ZP_05292399.1| Periplasmic serine proteases (ClpP class) [Acidithiobacillus caldus ATCC 51756] gi|254970251|gb|EET27745.1| Periplasmic serine proteases (ClpP class) [Acidithiobacillus caldus ATCC 51756] Length = 420 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 83/220 (37%), Gaps = 16/220 (7%) Query: 36 PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + + E D A+++ + S GG A Sbjct: 58 DGIAIVPVLGTLVRRSAYLDATSGLMSYHAIQAMAEDAFADPQVRAVLLEVDSSGGEAGG 117 Query: 83 GEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + ++ + KP+ E A SA Y I+ A+ + T+ GSIGV+ + Sbjct: 118 VFDLALRLRALSKASGKPLWAIADEAALSAAYAIASAAEQLWLTRTAEAGSIGVVAAHVD 177 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + G+S + + K + P + + + +Q +D Y FV LV+ R + Sbjct: 178 QSGADAQAGLSYTLLHAGEHKIDGHPHAPLPAEVAADIQADIDRLYDQFVELVASHRRLD 237 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 RI+ G A + GL D +G ++ +L Sbjct: 238 AQAVRAT-QARIYRGQAALQAGLADRIGTLDDALAALQQR 276 >gi|161831162|ref|YP_001596297.1| putative periplasmic protease [Coxiella burnetii RSA 331] gi|161763029|gb|ABX78671.1| peptidase, S49 (protease IV) family [Coxiella burnetii RSA 331] Length = 338 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 52/280 (18%), Positives = 112/280 (40%), Gaps = 18/280 (6%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS------QELIERIERIS 61 IK +Y + + + + + + +G I S +E+ + + Sbjct: 69 IKDKYELKRFLKSQKKEKKKKPNTTEAKKRIFVLNFQGDIRASAVCALREEITAVLTTAT 128 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNI 120 RDD +++ L S GG + +Q++ ++ + ++AAS GYL++C ++ Sbjct: 129 RDDQ---VLLRLESGGGVVHGYGLAASQLQRIKDAHIKLVIAIDKVAASGGYLMACVADR 185 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 I+AA ++VGSIGVL Q P +L K + + V + K + F E K M++ Sbjct: 186 IIAAPFAIVGSIGVLAQLPNFHRYLRKKYIDFEQVMAGDYKRTLTLFGENTEKGRAKMKE 245 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 V+ ++ F + E R ++ G W ++A + L+D + ++ + Sbjct: 246 EVEETHTLFKSFIKEHRQ--EVDVEQIATGEHWYASKALDLRLVDELKTSDDYLLAASQ- 302 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 + + + + + + S + + Sbjct: 303 -----NYDLFEVQYKRKPPLAERVSHNASRAYHQLLSGLM 337 >gi|330890771|gb|EGH23432.1| putative inner membrane peptidase [Pseudomonas syringae pv. mori str. 301020] Length = 340 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 50/271 (18%), Positives = 102/271 (37%), Gaps = 15/271 (5%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGG 78 + V + G I+ S + I + ++ D +++ L S GG Sbjct: 79 ALKKEKKQAEPKSRVYVLDFDGDIKASATESMRHEITALLTLATDKD--EVVLRLESGGG 136 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 ++ + +++ +T ++AAS GY+++C N I++A +++GSIGV+ Q Sbjct: 137 MVHSYGLASSQLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQ 196 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P V L K + + + + K + F E K + Q +D ++ F V+ R Sbjct: 197 LPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASYR 256 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 P ++ G +W G A L+D + +E + + + Sbjct: 257 --PQLSIDEVATGEVWLGMAAVDKLLVDELKTSDEYLAERAKDADVFHLHYV-----QRK 309 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + + +S + + Q W Sbjct: 310 SLQERMGMAAATSADQLATKWWGRLTQQRFW 340 >gi|167621040|ref|ZP_02389671.1| phage minor capsid protein C, putative [Burkholderia thailandensis Bt4] Length = 322 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 1/194 (0%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 + + L + + D + +++ + S GGSA + I+ KP+ V+ Sbjct: 99 PMTSYEGLRSAVNQAVADPAVEHIVLDIDSNGGSATGAFELADDIRAASLVKPITAIVNF 158 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 A S GYLI+ A++ ++ + TS VGSIGV+ + V ++ G+ + SV + K + + Sbjct: 159 SAFSGGYLIAAAASKVIVSRTSGVGSIGVIANHLDVSKRDEQQGIKVTSVFAGDHKNDLT 218 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P ++ +++ + +V +SY FV ++ R + G I+ G + + GL D Sbjct: 219 PHEPLSDQSLTFLTSMVQNSYKQFVDAIANFRGLSTQAVKDTQAG-IFFGQKGVEAGLAD 277 Query: 226 VVGGQEEVWQSLYA 239 V + + A Sbjct: 278 SVETPQAAINRIAA 291 >gi|229220821|ref|NP_230705.2| putative periplasmic protease [Vibrio cholerae O1 biovar El Tor str. N16961] gi|229259766|ref|YP_001216528.2| putative periplasmic protease [Vibrio cholerae O395] gi|255745477|ref|ZP_05419425.1| SohB protein peptidase U7 family [Vibrio cholera CIRS 101] gi|262158448|ref|ZP_06029564.1| SohB protein peptidase U7 family [Vibrio cholerae INDRE 91/1] gi|262170309|ref|ZP_06037996.1| SohB protein peptidase U7 family [Vibrio cholerae RC27] gi|255736552|gb|EET91949.1| SohB protein peptidase U7 family [Vibrio cholera CIRS 101] gi|262021324|gb|EEY40038.1| SohB protein peptidase U7 family [Vibrio cholerae RC27] gi|262029889|gb|EEY48537.1| SohB protein peptidase U7 family [Vibrio cholerae INDRE 91/1] Length = 353 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 107/267 (40%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 PH+ + G I +E + I +++ +++ L + GG + Sbjct: 97 GELESKRDPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 154 Query: 83 GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 155 YGLASSQLDRLKAAGLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 214 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + + + + K + F E KA + + ++ ++ F + E R P Sbjct: 215 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHQLFKDFIREHR--PA 272 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +AK +GL+D + +++ + + + K Sbjct: 273 LDLDKVATGEHWFGTQAKALGLVDEIQTSDDLIVAACK----SKTVLLLRYTQKKK--LA 326 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D ++ + + + L Sbjct: 327 DKLAGVAGDAADNVLLKLISRGQRPLV 353 >gi|134288686|ref|YP_001111084.1| gp5, prophage LambdaMc01, peptidase, U7 family [Burkholderia phage phi644-2] gi|134132071|gb|ABO60868.1| gp5, prophage LambdaMc01, peptidase, U7 family [Burkholderia phage phi644-2] Length = 322 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 1/194 (0%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 + + L + + D + +++ + S GGSA + I+ KP+ V+ Sbjct: 99 PMTSYEGLRAAVNQAVADPAVEHIVLDIDSNGGSATGAFELADDIRAASLVKPITAIVNF 158 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 A S GYLI+ A++ ++ + TS VGSIGV+ + V ++ G+ + SV + K + + Sbjct: 159 SAFSGGYLIAAAASQVIVSRTSGVGSIGVIANHLDVSKRDEQQGIKVTSVFAGDHKNDLT 218 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P ++ +++ + +V +SY FV ++ R + G I+ G + + GL D Sbjct: 219 PHEPLSDQSLAFLTSMVQNSYKQFVDAIANFRGLSTQAVKDTQAG-IFFGQKGVEAGLAD 277 Query: 226 VVGGQEEVWQSLYA 239 V + + A Sbjct: 278 SVETPQAAINRIAA 291 >gi|319776073|ref|YP_004138561.1| inner membrane peptidase [Haemophilus influenzae F3047] gi|319896882|ref|YP_004135077.1| inner membrane peptidase [Haemophilus influenzae F3031] gi|329123236|ref|ZP_08251804.1| protease SohB [Haemophilus aegyptius ATCC 11116] gi|317432386|emb|CBY80741.1| predicted inner membrane peptidase [Haemophilus influenzae F3031] gi|317450664|emb|CBY86884.1| predicted inner membrane peptidase [Haemophilus influenzae F3047] gi|327471445|gb|EGF16893.1| protease SohB [Haemophilus aegyptius ATCC 11116] Length = 353 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 102/227 (44%), Gaps = 13/227 (5%) Query: 38 VARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 V + G I S+ E+ + +D +++ L SPGG + + Sbjct: 106 VYVLDFCGDISASETTALREEISAILNVAKSEDE---VLLRLESPGGIVHNYGFAASQLS 162 Query: 92 KVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++K + +T V ++AAS GY+++C ++ IV+A +++GSIGV+ Q P V L K V Sbjct: 163 RLKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDV 222 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 + + + K + E K Q Q ++ ++ F + VS++R ++ G Sbjct: 223 DVDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATG 280 Query: 211 RIWTGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256 W G +A + L+D + +++ + + V ++K K Sbjct: 281 EHWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKK 327 >gi|229525671|ref|ZP_04415076.1| SohB protein peptidase U7 family [Vibrio cholerae bv. albensis VL426] gi|229339252|gb|EEO04269.1| SohB protein peptidase U7 family [Vibrio cholerae bv. albensis VL426] Length = 356 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 107/267 (40%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 PH+ + G I +E + I +++ +++ L + GG + Sbjct: 100 GELESKRDPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 157 Query: 83 GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 158 YGLASSQLDRLKAAGLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 217 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + + + + K + F E KA + + ++ ++ F + E R P Sbjct: 218 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHQLFKDFIREHR--PA 275 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +AK +GL+D + +++ + + + K Sbjct: 276 LDLDKVATGEHWFGTQAKTLGLVDEIQTSDDLIVAACK----SKTVLLLRYTQKKK--LA 329 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D ++ + + + L Sbjct: 330 DKLAGVAGDAADNVLLKLISRGQRPLV 356 >gi|153824949|ref|ZP_01977616.1| sohB protein, peptidase U7 family [Vibrio cholerae MZO-2] gi|229529849|ref|ZP_04419239.1| SohB protein peptidase U7 family [Vibrio cholerae 12129(1)] gi|149741461|gb|EDM55491.1| sohB protein, peptidase U7 family [Vibrio cholerae MZO-2] gi|229333623|gb|EEN99109.1| SohB protein peptidase U7 family [Vibrio cholerae 12129(1)] Length = 356 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 107/267 (40%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 PH+ + G I +E + I +++ +++ L + GG + Sbjct: 100 GELESKRDPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 157 Query: 83 GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 158 YGLASSQLDRLKAAGLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 217 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + + + + K + F E KA + + ++ ++ F + E R P Sbjct: 218 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHQLFKDFIREHR--PA 275 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +AK +GL+D + +++ + + + K Sbjct: 276 LDLDKVATGEHWFGTQAKTLGLVDEIQTSDDLIVAACK----SKTVLLLRYTQKKK--LA 329 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D ++ + + + L Sbjct: 330 DKLAGVAGDAADNVLLKLISRGQRPLV 356 >gi|262276077|ref|ZP_06053886.1| SohB protein peptidase U7 family [Grimontia hollisae CIP 101886] gi|262219885|gb|EEY71201.1| SohB protein peptidase U7 family [Grimontia hollisae CIP 101886] Length = 352 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 55/238 (23%), Positives = 106/238 (44%), Gaps = 12/238 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAY 81 +S + PHV + +G I+ + E+ + D ++V L S GG + Sbjct: 96 ASLEQSRKPHVFVVDFKGSIDAREVASLREEVTAILAVAKAGDE---VLVRLESGGGMVH 152 Query: 82 AGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 A + ++K +T V ++AAS GY+++C ++ IVAA ++VGSIGV+ Q P Sbjct: 153 AYGLASSQLDRIKQAGIPLTVAVDKVAASGGYMMACVADKIVAAPFAVVGSIGVIAQLPN 212 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E KA + ++ ++ F + +++ R P Sbjct: 213 FNKLLKKHDIEFEQLTAGEFKRTLTMFGENTDKAREKFLTELEETHALFKQFIADHR--P 270 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ G W G +A +GLID +G ++ S ++ ++ + Sbjct: 271 SLDLEKVATGEHWFGNQALPLGLIDSIGTSDDYLVSAVKEKDVLGVKYVQRKKLAEKL 328 >gi|313847682|emb|CBY16670.1| putative exported protease [Chlamydophila psittaci RD1] Length = 335 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 111/234 (47%), Gaps = 12/234 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQELIERIERISR-------DDSATALIVSLSSPGGSAY 81 + ++P +A + ++ I S+ + I+ D +I+ + PGG + Sbjct: 57 KDIGKDAPIIAVLEMKDVIASSKHTAKIIQDAITTLDSAPYKDRVKGIIIDMDCPGGEVF 116 Query: 82 AGEAIFRAIQKVKNRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQY 138 ++ IQ K R V+ + AS GY ++CA++ I + +SL+GS+GVL Y Sbjct: 117 EISRVYSIIQFWKQRTQCPVYVFVNGLCASGGYYVACAADKIYSTSSSLIGSVGVLSGPY 176 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 VK L + GV + + KA +P++E K ++ Q+++D Y FV +V +R Sbjct: 177 FNVKEGLSRYGVQSDLLIAGKDKAPMNPYTEWTAKDREIRQEIIDYLYGQFVDVVVTNRP 236 Query: 199 I-PYDKTLVLSDGRIWTGAEAKKVGLID-VVGGQEEVWQSLYALGVDQSIRKIK 250 DK + + R+++ +A + G ID +++V Q L A ++ ++ Sbjct: 237 RLTKDKLVSVLGARLYSPEKALEEGYIDVANVTKQQVLQDLVADCKIENNYRVI 290 >gi|53729128|ref|ZP_00134093.2| COG0616: Periplasmic serine proteases (ClpP class) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207496|ref|YP_001052721.1| putative periplasmic protease [Actinobacillus pleuropneumoniae L20] gi|126096288|gb|ABN73116.1| putative protease SohB [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 351 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 105/231 (45%), Gaps = 12/231 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAAS 109 +E+ I +++D +++ L SPGG + +Q+++ +T V ++AAS Sbjct: 124 REIDAVISLANKEDE---VLLRLESPGGVVHGYGLAASQLQRLRTHNIPLTVAVDKVAAS 180 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 GY+++C +N IV+A +++GS+GV+ Q P + L K + + + + K + E Sbjct: 181 GGYMMACVANKIVSAPFAIIGSVGVVAQVPNIHRLLKKHEIDVDVMTAGEYKRTVTLVGE 240 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 K Q Q ++ ++ F + V+++R P ++ G W G +A + L+D + Sbjct: 241 NTEKGKQKFQQELEETHQLFKQFVAQNR--PQLDIEKIATGEHWFGKQALALDLVDEINT 298 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 +++ + +++ + + + +E+ I + Sbjct: 299 SDDLLLNAIK------EKEVIELKFKQKKNLTQRLGEQVELSVENVIAKLL 343 >gi|238794712|ref|ZP_04638316.1| protease sohB [Yersinia intermedia ATCC 29909] gi|238725943|gb|EEQ17493.1| protease sohB [Yersinia intermedia ATCC 29909] Length = 348 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 115/260 (44%), Gaps = 18/260 (6%) Query: 36 PHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 P + I +G I+ +E+ + S D +++ L SPGG + Sbjct: 100 PCLYVIDFKGSIDAHEVTSLREEISAVLAVASAQDE---VLLRLESPGGVVHGYGLAASQ 156 Query: 90 IQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 +++++++ +T V ++AAS GY+++C ++ I++A +++GSIGV+ Q P L K Sbjct: 157 LERLRHKGIRLTVAVDKVAASGGYMMACVADRIISAPFAIIGSIGVVAQIPNFHRLLKKN 216 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 + ++ + K + F E + + ++ ++ ++ F + V + R P ++ Sbjct: 217 DIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVQQQR--PSLDIDAVA 274 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 G W G +AK GL+D +G +++ + + ++ + + D S Sbjct: 275 TGEHWFGTQAKDKGLVDAIGTSDDLL--IAEM----DNHEVIGVHYARRKRLMDRFTGSA 328 Query: 269 SSLLEDTIPLMKQTKVQGLW 288 + + + Q + L Sbjct: 329 AESADRLLLRWWQRGEKPLL 348 >gi|328545661|ref|YP_004305770.1| peptidase S49 [polymorphum gilvum SL003B-26A1] gi|326415401|gb|ADZ72464.1| Peptidase S49 [Polymorphum gilvum SL003B-26A1] Length = 439 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 100/268 (37%), Gaps = 19/268 (7%) Query: 32 EDNSPHVARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGG 78 P +A + I G + D E+ +E D + A++V + SPGG Sbjct: 52 SVTDPGIAVVPILGPLVTRGDWLTSLLGASDYGEVASAVEAALADPTVRAVLVEIDSPGG 111 Query: 79 SAYAGEAIFRAI--QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 + + + +KP+ E A SA + I+ ++ + T+ VGSIGV+ Sbjct: 112 EVGGLFDLVDRLVSLRQDAQKPLWAVASESALSAAFAIASVADRLYVTRTAEVGSIGVVA 171 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + G+ V + K E + + ++ A+ +Q VD+ + V LV+ + Sbjct: 172 IHVDESVADVMAGLKWTLVHAGDRKIEGNAHAPLSDTALSAIQADVDALHADLVTLVARN 231 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 RN+ D + I+ G GL D +G + L L ++ + Sbjct: 232 RNMSPDAVRAT-EAAIYRGQRGIGAGLADKLGTVDLA---LVDLARALDPPRLITGASQR 287 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + + ++ D P + V Sbjct: 288 ARAHQPSRRKTAMTVEPDLNPAAEDAAV 315 >gi|328474635|gb|EGF45440.1| putative inner membrane peptidase [Vibrio parahaemolyticus 10329] Length = 353 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 109/260 (41%), Gaps = 17/260 (6%) Query: 31 VEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 PH+ + G I+ +E+ + D +++ L S GG + Sbjct: 100 DSKREPHLFVLDFNGSIDAKEVASLREEITAILAVAREGDE---VLLRLESGGGMVHGYG 156 Query: 85 AIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 157 LASSQLDRIKAAGLPLTISVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPNFNK 216 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K + + + + K + F E KA + ++ ++ F + E R P + Sbjct: 217 LLKKHDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHVLFKDFIRERR--PSLE 274 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +AK++GL+D + +++ + ++ + K L Sbjct: 275 LEKVATGEHWFGTQAKELGLVDEISTSDDLVVAACKEKTVLAVHYV-----QKKKLADKL 329 Query: 264 KNLSISSLLEDTIPLMKQTK 283 ++ + L ++ + Sbjct: 330 AGVASKVADSVVLKLAERGQ 349 >gi|327483771|gb|AEA78178.1| Possible protease sohB [Vibrio cholerae LMA3894-4] Length = 353 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 107/267 (40%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 PH+ + G I +E + I +++ +++ L + GG + Sbjct: 97 GELESKRDPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 154 Query: 83 GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 155 YGLASSQLDRLKAAGLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 214 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + + + + K + F E KA + + ++ ++ F + E R P Sbjct: 215 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHQLFKDFIREHR--PA 272 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +AK +GL+D + +++ + + + K Sbjct: 273 LDLDKVATGEHWFGTQAKTLGLVDEIQTSDDLIVAACK----SKTVLLLRYTQKKK--LA 326 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D ++ + + + L Sbjct: 327 DKLAGVAGDAADNVLLKLISRGQRPLV 353 >gi|87121325|ref|ZP_01077215.1| peptidase, U7 family protein [Marinomonas sp. MED121] gi|86163482|gb|EAQ64757.1| peptidase, U7 family protein [Marinomonas sp. MED121] Length = 348 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 112/254 (44%), Gaps = 18/254 (7%) Query: 29 SHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYA 82 S V + + + G I+ S +E+ + S DD ++V L S GG + Sbjct: 92 SSVIETKKRLFVLDFDGDIQASATQTLRREITAVLSVASADDE---VVVRLESGGGVVHG 148 Query: 83 GEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +Q++ P+ V ++AAS GY+++C ++ I+AA +++GSIGV+ Q P + Sbjct: 149 YGLAASQLQRIKDANLPLTICVDKVAASGGYMMACVADKIIAAPFAILGSIGVVAQVPNI 208 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 LDK V ++ + K + E + + + ++ ++ F VS +R P Sbjct: 209 HRLLDKSLVDVELHTAGKYKRTLTMLGENTDEGREKFKQDLEDTHVLFKEFVSSAR--PV 266 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G +W G++A K L+D V + L + + ++ P K Sbjct: 267 IDIEAIATGDVWYGSQALKNNLVDQVSTSD---AYLVSHFDSADVVSVRYQEPKK---LA 320 Query: 262 DLKNLSISSLLEDT 275 + LS+ S LE Sbjct: 321 EKLGLSVLSALEAK 334 >gi|323180068|gb|EFZ65623.1| head-tail preconnector protein GP5 domain protein [Escherichia coli 1180] Length = 399 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 82/188 (43%), Gaps = 1/188 (0%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 ++ +++ D +++ + SPGG A I +++ +KPV ++ A SA Sbjct: 2 DGIVACLQQAMADSQVRGVLLDIDSPGGQAAGAFDCADMIYRLRQQKPVWALCNDTACSA 61 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 L++ A + + +TS +GSIGV+ + L + GV I + S K + + F + Sbjct: 62 AMLLASACSRRLVTQTSRIGSIGVMMSHVSYAGHLAQAGVDITLIYSGAHKVDGNQFEAL 121 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + Q MQ +D++ F V+ + D ++ ++ G + GL D + Sbjct: 122 PAEVRQDMQQRIDAARRMFAEKVAMYTGLSVDAV-TGTEAAVFEGQSGIEAGLADELINA 180 Query: 231 EEVWQSLY 238 + + Sbjct: 181 SDAISVMA 188 >gi|307249131|ref|ZP_07531138.1| protease sohB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306854419|gb|EFM86615.1| protease sohB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 351 Score = 86.2 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 105/231 (45%), Gaps = 12/231 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAAS 109 +E+ I +++D +++ L SPGG + +Q+++ +T V ++AAS Sbjct: 124 REIDAVISLANKEDE---VLLRLESPGGVVHGYGLAASQLQRLRTHNIPLTVAVDKVAAS 180 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 GY+++C +N IVAA +++GS+GV+ Q P + L K + + + + K + E Sbjct: 181 GGYMMACVANKIVAAPFAIIGSVGVVAQVPNIHRLLKKHEIDVDVMTAGEYKRTVTLVGE 240 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 K Q Q ++ ++ F + V+++R P ++ G W G +A + L+D + Sbjct: 241 NTEKGKQKFQQELEETHQLFKQFVAQNR--PQLDIEKIATGEHWFGKQALALDLVDEINT 298 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 +++ + +++ + + + +E+ I + Sbjct: 299 SDDLLLNAIK------EKEVIELKFKQKKNLTQRLGEQVELSVENVIAKLL 343 >gi|307321389|ref|ZP_07600787.1| peptidase S49 [Sinorhizobium meliloti AK83] gi|306892934|gb|EFN23722.1| peptidase S49 [Sinorhizobium meliloti AK83] Length = 301 Score = 86.2 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 90/215 (41%), Gaps = 14/215 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 P +A I I G + + + ++ D A++ + S GG Sbjct: 77 PGIALIEIEGSLVNKGKWIGKSCGMTSYEAIGVQVRDCIERDDIKAVVFEVDSYGGEVTG 136 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I ++ KP I + + A SAGYL++ +V +T + GSIGV+ + + Sbjct: 137 AFDCAEQIFELSQVKPTIAVLTDHACSAGYLLASPCRQLVIPQTGICGSIGVISMHVDMS 196 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 +L K G+ + +K+ KA+ +P+ + +Q ++ F V+ R Sbjct: 197 AWLAKEGLKVTILKAGEHKADFNPYEAIPDDVLQQELAELEELRVEFAATVARYRAGRLT 256 Query: 203 KTLVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 + L ++ R++ G +A GL D V +V ++ Sbjct: 257 QQSALATEARVYRGQKAVDAGLADAVARPSQVLEA 291 >gi|251789767|ref|YP_003004488.1| putative periplasmic protease [Dickeya zeae Ech1591] gi|247538388|gb|ACT07009.1| Peptidase S49 domain protein [Dickeya zeae Ech1591] Length = 348 Score = 86.2 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 105/249 (42%), Gaps = 16/249 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGS 79 + + P + + G ++ + E+ + +D +++ L SPGG Sbjct: 90 AKRGEEKSARPCLYVLDFNGSMDAGEVSSLREEVSAVLAVARPEDE---VLLRLESPGGV 146 Query: 80 AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + +Q+ + R +T V ++AAS GY+++C ++ IVAA ++VGSIGV+ Q Sbjct: 147 VHGYGLAASQLQRFRQRGIRLTVAVDKVAASGGYMMACVADRIVAAPFAIVGSIGVVAQI 206 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P L + ++ + K + F E + + + ++ ++ F + V E R Sbjct: 207 PNFNRLLKSKEIDVELHTAGQYKRTLTLFGENTEEGREKFRQELNETHLLFKQFVGEMR- 265 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P ++ G W G +AK++GL+D +G +++ + + + K Sbjct: 266 -PSLDIESVATGEHWFGTQAKEMGLVDAIGTSDDLLIAEMEKHEVLA----VRYTRRKRL 320 Query: 259 WFCDLKNLS 267 + Sbjct: 321 LDRLTGSTG 329 >gi|190149277|ref|YP_001967802.1| protease SohB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307244809|ref|ZP_07526908.1| protease sohB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307251529|ref|ZP_07533436.1| protease sohB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256029|ref|ZP_07537817.1| protease sohB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307262588|ref|ZP_07544219.1| protease sohB [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914408|gb|ACE60660.1| putative protease SohB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306854254|gb|EFM86460.1| protease sohB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306860993|gb|EFM92999.1| protease sohB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306865451|gb|EFM97346.1| protease sohB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306872086|gb|EFN03799.1| protease sohB [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 351 Score = 86.2 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 105/231 (45%), Gaps = 12/231 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAAS 109 +E+ I +++D +++ L SPGG + +Q+++ +T V ++AAS Sbjct: 124 REIDAVISLANKEDE---VLLRLESPGGVVHGYGLAASQLQRLRTHNIPLTVAVDKVAAS 180 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 GY+++C +N IVAA +++GS+GV+ Q P + L K + + + + K + E Sbjct: 181 GGYMMACVANKIVAAPFAIIGSVGVVAQVPNIHRLLKKHEIDVDVMTAGEYKRTVTLVGE 240 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 K Q Q ++ ++ F + V+++R P ++ G W G +A + L+D + Sbjct: 241 NTEKGKQKFQQELEETHQLFKQFVAQNR--PQLDIEKIATGEHWFGKQALALDLVDEINT 298 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 +++ + +++ + + + +E+ I + Sbjct: 299 SDDLLLNAIK------EKEVIELKFKQKKNLTQRLGEQVELSVENVIAKLL 343 >gi|217972851|ref|YP_002357602.1| putative periplasmic protease [Shewanella baltica OS223] gi|217497986|gb|ACK46179.1| Peptidase S49 domain protein [Shewanella baltica OS223] Length = 330 Score = 86.2 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 57/255 (22%), Positives = 110/255 (43%), Gaps = 12/255 (4%) Query: 31 VEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEAIF 87 + ++ V I +G I+ ++ L E I I + ++V++ S GG + Sbjct: 79 DDTSTGKVFVIDFKGSIDAAEVASLREEISAILAIAEKGDEVVVNVESGGGMVHGYGLAS 138 Query: 88 RAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 + ++ + P+ V ++AAS GY+++C +N I AA ++VGSIGV+ Q P L Sbjct: 139 SQLDRLRQADIPLTVCVDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQLPNFNRLLK 198 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 K + + + K + F E + + Q Q+ ++ ++ F V + R P + Sbjct: 199 KHEIDYEQHTAGNFKRTLTVFGENSDEGRQKFQEELEETHVLFKAFVGKYR--PELDLVK 256 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 ++ G W G +A ++GL+D + ++V SL A R + D Sbjct: 257 VATGEHWYGQQAIELGLVDAISTSDDVIMSLAA------ERTVYKMRYQVRKKLADKIAH 310 Query: 267 SISSLLEDTIPLMKQ 281 S + + + Sbjct: 311 GASLSVNAIFNRLIE 325 >gi|228962557|ref|YP_751249.2| putative periplasmic protease [Shewanella frigidimarina NCIMB 400] Length = 336 Score = 86.2 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 98/250 (39%), Gaps = 16/250 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80 + V I +G I+ ++ E+ I +DD ++V++ S GG Sbjct: 81 AAEKQNLTKGKVFVIDFKGSIDANEVSSLRQEVTAIITIADKDDQ---VLVNVESGGGMV 137 Query: 81 YAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + + +++ ++ ++AAS GY+++C +N + AA ++VGSIGV+ Q P Sbjct: 138 HGYGLASSQLDRLRQANIPLSICVDKVAASGGYMMACVANKVYAAPFAIVGSIGVIAQIP 197 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 L + + + K + F E + Q ++ ++ F V R Sbjct: 198 NFNRLLKNHDIDYEQHTAGDFKRTLTVFGENTDEGRAKFQQELEETHVLFKEFV--GRYR 255 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 P ++ G W G +A +GLID V ++V L + K Sbjct: 256 PNMDIAKVATGEHWYGQQAIDLGLIDAVSTSDDVILDLVNTHQVIK----IQYQMKKKLA 311 Query: 260 FCDLKNLSIS 269 +S+S Sbjct: 312 DKIAHGVSLS 321 >gi|114335029|gb|ABI72411.1| Peptidase S49, N-terminal domain protein [Shewanella frigidimarina NCIMB 400] Length = 340 Score = 86.2 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 98/250 (39%), Gaps = 16/250 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSA 80 + V I +G I+ ++ E+ I +DD ++V++ S GG Sbjct: 85 AAEKQNLTKGKVFVIDFKGSIDANEVSSLRQEVTAIITIADKDDQ---VLVNVESGGGMV 141 Query: 81 YAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + + +++ ++ ++AAS GY+++C +N + AA ++VGSIGV+ Q P Sbjct: 142 HGYGLASSQLDRLRQANIPLSICVDKVAASGGYMMACVANKVYAAPFAIVGSIGVIAQIP 201 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 L + + + K + F E + Q ++ ++ F V R Sbjct: 202 NFNRLLKNHDIDYEQHTAGDFKRTLTVFGENTDEGRAKFQQELEETHVLFKEFV--GRYR 259 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 P ++ G W G +A +GLID V ++V L + K Sbjct: 260 PNMDIAKVATGEHWYGQQAIDLGLIDAVSTSDDVILDLVNTHQVIK----IQYQMKKKLA 315 Query: 260 FCDLKNLSIS 269 +S+S Sbjct: 316 DKIAHGVSLS 325 >gi|307260458|ref|ZP_07542153.1| protease sohB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869861|gb|EFN01643.1| protease sohB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 351 Score = 86.2 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 105/231 (45%), Gaps = 12/231 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAAS 109 +E+ I +++D +++ L SPGG + +Q+++ +T V ++AAS Sbjct: 124 REIDAVISLANKEDE---VLLRLESPGGVVHGYGLAASQLQRLRTHNIPLTVAVDKVAAS 180 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 GY+++C +N IVAA +++GS+GV+ Q P + L K + + + + K + E Sbjct: 181 GGYMMACVANKIVAAPFAIIGSVGVVAQVPNIHRLLKKHEIDVDVMTAGEYKRTVTLVGE 240 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 K Q Q ++ ++ F + V+++R P ++ G W G +A + L+D + Sbjct: 241 NTEKGKQKFQQELEETHQLFKQFVAQNR--PQLDIEKIATGEHWFGKQALALDLVDEINT 298 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 +++ + +++ + + + +E+ I + Sbjct: 299 SDDLLLNAIK------EKEVIELKFKQKKNLTQRLGEQVELSVENVIAKLL 343 >gi|110806591|ref|YP_690111.1| head-tail preconnector gp5 [Shigella flexneri 5 str. 8401] gi|110616139|gb|ABF04806.1| head-tail preconnector gp5 [Shigella flexneri 5 str. 8401] gi|333007221|gb|EGK26708.1| head-tail preconnector protein GP5 [Shigella flexneri K-218] Length = 501 Score = 86.2 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 88/217 (40%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADTQVRGVLLDIDSPGGQATG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQLKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMGHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + + K + + F + K Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYAGSHKVDGNQFESLPAKVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + ++ ++ G + L D + + + A Sbjct: 256 AVMG-TEAAVFEGQSGIEAELADELINASDAISVMAA 291 >gi|304411918|ref|ZP_07393529.1| Peptidase S49 domain protein [Shewanella baltica OS183] gi|307303314|ref|ZP_07583069.1| Peptidase S49 domain protein [Shewanella baltica BA175] gi|304349778|gb|EFM14185.1| Peptidase S49 domain protein [Shewanella baltica OS183] gi|306913674|gb|EFN44096.1| Peptidase S49 domain protein [Shewanella baltica BA175] Length = 338 Score = 86.2 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 57/255 (22%), Positives = 110/255 (43%), Gaps = 12/255 (4%) Query: 31 VEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEAIF 87 + ++ V I +G I+ ++ L E I I + ++V++ S GG + Sbjct: 87 DDTSTGKVFVIDFKGSIDAAEVASLREEISAILAIAEKGDEVVVNVESGGGMVHGYGLAS 146 Query: 88 RAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 + ++ + P+ V ++AAS GY+++C +N I AA ++VGSIGV+ Q P L Sbjct: 147 SQLDRLRQAEIPLTVCVDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQLPNFNRLLK 206 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 K + + + K + F E + + Q Q+ ++ ++ F V + R P + Sbjct: 207 KHEIDYEQHTAGNFKRTLTVFGENSDEGRQKFQEELEETHVLFKAFVGKYR--PELDLVK 264 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 ++ G W G +A ++GL+D + ++V SL A R + D Sbjct: 265 VATGEHWYGQQAIELGLVDAISTSDDVIMSLAA------ERTVYKMRYQVRKKLADKIAH 318 Query: 267 SISSLLEDTIPLMKQ 281 S + + + Sbjct: 319 GASLSVNAIFNRLIE 333 >gi|307308725|ref|ZP_07588421.1| peptidase S49 [Sinorhizobium meliloti BL225C] gi|306900731|gb|EFN31342.1| peptidase S49 [Sinorhizobium meliloti BL225C] Length = 301 Score = 85.8 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 90/213 (42%), Gaps = 14/213 (6%) Query: 38 VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 +A I I G + + + +++ D A++ + S GG Sbjct: 79 IALIEIEGSLVNKGKWIGKSCGMTSYEGISAQVQDCIDRDDIKAVVFEVDSYGGEVTGAF 138 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I ++ KP I + + A SAGYL++ +V +T + GSIGV+ + + + Sbjct: 139 DCAEQIFELSQVKPTIAVLTDHACSAGYLLASPCRQLVIPQTGICGSIGVISMHVDMSAW 198 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K G+ + +K+ KA+ +P+ + +Q ++ F V+ R + Sbjct: 199 LAKEGLKVTILKAGEHKADFNPYEAIPDDVLQQELAELEELRVEFAATVARYRAGRLTQQ 258 Query: 205 LVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 L ++ R++ G +A GL D V +V ++ Sbjct: 259 SALATEARVYRGQKAVDAGLADAVARPSQVLEA 291 >gi|293395939|ref|ZP_06640220.1| S49 family peptidase [Serratia odorifera DSM 4582] gi|291421437|gb|EFE94685.1| S49 family peptidase [Serratia odorifera DSM 4582] Length = 348 Score = 85.8 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 53/270 (19%), Positives = 118/270 (43%), Gaps = 18/270 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGS 79 + S + + P + + +G ++ +E+ + + +D +++ L SPGG Sbjct: 90 AKSGAAQASKPCLYVLDFKGSMDAHEVTSLREEISAVLAVATAEDE---VLLRLESPGGV 146 Query: 80 AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + +++++ +T V ++AAS GY+++C ++ IVAA +++GSIGV+ Q Sbjct: 147 VHGYGLAASQLERLRKGGIRLTVAVDKVAASGGYMMACVADRIVAAPFAIIGSIGVVAQI 206 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P L K + ++ + K + F E + ++ ++ ++ F + V + R Sbjct: 207 PNFHRLLKKNDIDVELHTAGQFKRTLTLFGENTEQGRDKFREDLNETHELFKQFVHQQR- 265 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P ++ G W G +AK+ GLID VG +++ + + ++ + Sbjct: 266 -PSLDIDSVATGEHWFGTQAKEKGLIDAVGTSDDLL--IAEM----ENHEVVGVRYSRRK 318 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + D S + + + Q + L Sbjct: 319 RWVDRFTGSAAESADRLLLRWWQRGEKPLL 348 >gi|17975166|ref|NP_536361.1| putative capsid assembly protein/protease [Burkholderia phage phiE125] gi|17484027|gb|AAL40278.1|AF447491_5 gp5 [Burkholderia phage phiE125] Length = 301 Score = 85.8 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 1/194 (0%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 + + L + + D + +++ + S GGSA + I+ KP+ V+ Sbjct: 78 PMTSYEGLRSAVNQAVADPAVEHIVLDIDSNGGSATGAFELADDIRAASLVKPITAIVNF 137 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 A S GYLI+ A++ ++ + TS VGSIGV+ + V ++ G+ + SV + K + + Sbjct: 138 SAFSGGYLIAAAASKVIVSRTSGVGSIGVIANHLDVSKRDEQQGIKVTSVFAGDHKNDLT 197 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P ++ +++ + +V +SY FV ++ R + G I+ G + + GL D Sbjct: 198 PHEPLSDQSLTFLTSMVQNSYKQFVDAIANFRGLSTQAVKDTQAG-IFFGQKGVEAGLAD 256 Query: 226 VVGGQEEVWQSLYA 239 V + + A Sbjct: 257 SVETPQAAINRIAA 270 >gi|29653702|ref|NP_819394.1| putative periplasmic protease [Coxiella burnetii RSA 493] gi|153207278|ref|ZP_01946042.1| peptidase, S49 (protease IV) family [Coxiella burnetii 'MSU Goat Q177'] gi|154707075|ref|YP_001425059.1| putative periplasmic protease [Coxiella burnetii Dugway 5J108-111] gi|165918692|ref|ZP_02218778.1| peptidase, S49 (protease IV) family [Coxiella burnetii RSA 334] gi|212218185|ref|YP_002304972.1| putative periplasmic protease [Coxiella burnetii CbuK_Q154] gi|29540965|gb|AAO89908.1| non-proteolytic protein, peptidase family S49 [Coxiella burnetii RSA 493] gi|120576766|gb|EAX33390.1| peptidase, S49 (protease IV) family [Coxiella burnetii 'MSU Goat Q177'] gi|154356361|gb|ABS77823.1| non-proteolytic protein, peptidase family S49 [Coxiella burnetii Dugway 5J108-111] gi|165917627|gb|EDR36231.1| peptidase, S49 (protease IV) family [Coxiella burnetii RSA 334] gi|212012447|gb|ACJ19827.1| non-proteolytic protein, peptidase family S49 [Coxiella burnetii CbuK_Q154] Length = 338 Score = 85.8 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 52/280 (18%), Positives = 112/280 (40%), Gaps = 18/280 (6%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS------QELIERIERIS 61 IK +Y + + + + + + +G I S +E+ + + Sbjct: 69 IKDKYELKRFLKSQKKEKKKKPNTTEAKKRIFVLNFQGDIRASAVCALREEITAVLTTAT 128 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNI 120 RDD +++ L S GG + +Q++ ++ + ++AAS GYL++C ++ Sbjct: 129 RDDE---VLLRLESGGGVVHGYGLAASQLQRIKDAHIKLVIAIDKVAASGGYLMACVADR 185 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 I+AA ++VGSIGVL Q P +L K + + V + K + F E K M++ Sbjct: 186 IIAAPFAIVGSIGVLAQLPNFHRYLRKKYIDFEQVMAGDYKRTLTLFGENTEKGRAKMKE 245 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 V+ ++ F + E R ++ G W ++A + L+D + ++ + Sbjct: 246 EVEETHTLFKSFIKEHRQ--EVDVEQIATGEHWYASKALDLRLVDELKTSDDYLLAASQ- 302 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 + + + + + + S + + Sbjct: 303 -----NYDLFEVQYKRKPPLAERVSHNASRAYHQLLSGLM 337 >gi|167470520|ref|ZP_02335224.1| peptidase, S49 family protein [Yersinia pestis FV-1] Length = 321 Score = 85.8 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 52/213 (24%), Positives = 102/213 (47%), Gaps = 6/213 (2%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATA-LIVSLSSPGGSAYA 82 + S V P + I +G I + L E I I +A +++ L SPGG + Sbjct: 90 AKSGAVAAVKPCLYVIDFKGSIGAQEVSSLREEISAILAVATAQDEVLLRLESPGGVVHG 149 Query: 83 GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + +++ R +T V ++AAS GY+++C ++ I+ A +++GSIGV+ Q P Sbjct: 150 YGLAASQLARLRQRGIRLTVAVDKVAASGGYMMACVADRIICAPFAIIGSIGVVAQIPNF 209 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + ++ + K + F E + + ++ ++ ++ F + V + R P Sbjct: 210 HRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNETHLLFKQFVQQQR--PS 267 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 ++ G W G +AK+ GL+D +G +++ Sbjct: 268 LDIDAVATGEHWFGTQAKEKGLVDAIGTSDDLL 300 >gi|87242919|gb|ABD33956.1| protease IV [uncultured bacterium] Length = 172 Score = 85.8 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 55/170 (32%), Positives = 91/170 (53%), Gaps = 6/170 (3%) Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYPYVKPF 144 ++R + ++K +KP I + + AAS GY ISCA+N I A T+L GSIG+ Y K F Sbjct: 1 MWREVVRLKEKKPAIVSMGDYAASGGYYISCAANRIFADPTTLTGSIGIFGMMYSGEKLF 60 Query: 145 LDKLGVSIKSVKSSPMKA-----EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + LG++ VK++ M P +N ++MQ+ V+ Y FV +E R + Sbjct: 61 TETLGLNFDVVKTNKMADLGASLGPVLTRPLNASEQELMQNYVNRGYKLFVNRCAEGRKM 120 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 + +++GR+WTGA AK +GL+D +GG ++ + ++ I Sbjct: 121 STEAIEKVAEGRVWTGAMAKDLGLVDQLGGIDKALNAAATQAGIENYSII 170 >gi|289627176|ref|ZP_06460130.1| putative periplasmic protease [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648724|ref|ZP_06480067.1| putative periplasmic protease [Pseudomonas syringae pv. aesculi str. 2250] gi|330867981|gb|EGH02690.1| putative inner membrane peptidase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 340 Score = 85.8 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 54/274 (19%), Positives = 104/274 (37%), Gaps = 28/274 (10%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGG 78 + V + G I+ S + I + ++ D +++ L S GG Sbjct: 79 ALKKEKKQAEPKSRVYVLDFDGDIKASATESMRHEITALLTLATDKD--EVVLRLESGGG 136 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 ++ + +++ +T ++AAS GY+++C N I++A +++GSIGV+ Q Sbjct: 137 MVHSYGLASSQLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQ 196 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P V L K + + + + K + F E K + Q +D ++ F V+ R Sbjct: 197 LPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASYR 256 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 P ++ G +W G A L+D + +E L D + + Sbjct: 257 --PQLSIDEVATGEVWLGMAAVDKLLVDELKTSDE---YLAERAKDADVFHLHYLQRK-- 309 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 L++ + + T L A W Sbjct: 310 -------------SLQERMGMAAATSADQLAAKW 330 >gi|187932068|ref|YP_001892053.1| putative periplasmic protease [Francisella tularensis subsp. mediasiatica FSC147] gi|187712977|gb|ACD31274.1| peptidase family S49 protein [Francisella tularensis subsp. mediasiatica FSC147] Length = 338 Score = 85.8 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 45/252 (17%), Positives = 104/252 (41%), Gaps = 14/252 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYA 82 + + I +G I+ SQ E+ + + +D +IV + SPGG Sbjct: 86 DKQDKPKQKIFVINFKGDIDASQVENLRNEVSAILAVANTEDE---IIVRIDSPGGVVNG 142 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYV 141 +++++ +T + A++G + A + I+AA ++VGSIGV+ P + Sbjct: 143 YGFAAAQLERIRQAGINLTVCIDQVAASGGYMMSAVAHKIIAAPFAIVGSIGVVGTIPNI 202 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + L+K G++++ S K + + + ++S + F + + R P Sbjct: 203 RELLEKNGINVEMHTSGEYKRTLTTVGVNTEEGRNKFKQDLESIHQLFKKHILVYR--PS 260 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +A ++GL+D + ++ L L ++ ++ + + Sbjct: 261 LDIDKVATGEYWFGKDALELGLVDKIQTYDDYLIDL--LKKQHNVYEVSYVIKKEKGFLR 318 Query: 262 DLKNLSISSLLE 273 ++ ++ Sbjct: 319 SKFSMLKRAITN 330 >gi|332760042|gb|EGJ90342.1| head-tail preconnector protein GP5 [Shigella flexneri 4343-70] Length = 501 Score = 85.8 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 88/217 (40%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADTQVRGVLLDIDSPGGQATG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQLKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMGHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + + K + + F + K Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYAGSHKVDGNQFESLPAKVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + ++ ++ G + L D + + + A Sbjct: 256 AVMG-TEAAVFEGQSGIEAELADELINASDAISVMAA 291 >gi|330875134|gb|EGH09283.1| putative inner membrane peptidase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 340 Score = 85.8 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 50/262 (19%), Positives = 102/262 (38%), Gaps = 15/262 (5%) Query: 33 DNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + V + G I+ S + I + ++ D +++ L S GG ++ Sbjct: 88 EPKARVYVLDFDGDIKASATESMRHEITALLTLATDKD--EVVLRLESGGGMVHSYGLAS 145 Query: 88 RAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 + +++ +T ++AAS GY+++C N I++A +++GSIGV+ Q P V L Sbjct: 146 SQLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQLPNVNRLLK 205 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 K + + + + K + F E K + Q +D ++ F V+ R P Sbjct: 206 KHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASYR--PQLSIDE 263 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 ++ G +W G A L+D + +E + + + + Sbjct: 264 VATGEVWLGMAAVDKLLVDELKTSDEYLAERAKQADVFHLHYV-----QRKSLQERMGMA 318 Query: 267 SISSLLEDTIPLMKQTKVQGLW 288 + +S + + Q W Sbjct: 319 AATSADQLATKWWGRLTQQRFW 340 >gi|16273569|ref|NP_439824.1| putative periplasmic protease [Haemophilus influenzae Rd KW20] gi|260581275|ref|ZP_05849093.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|1174392|sp|P45315|SOHB_HAEIN RecName: Full=Probable protease sohB gi|1574534|gb|AAC23328.1| protease, putative (sohB) [Haemophilus influenzae Rd KW20] gi|260092102|gb|EEW76047.1| conserved hypothetical protein [Haemophilus influenzae RdAW] Length = 353 Score = 85.8 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 102/227 (44%), Gaps = 13/227 (5%) Query: 38 VARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 V + G I S+ E+ + +D +++ L SPGG + + Sbjct: 106 VYVLDFCGDISASETTALREEISAILNVAKSEDE---VLLRLESPGGIVHNYGFAASQLS 162 Query: 92 KVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++K + +T V ++AAS GY+++C ++ IV+A +++GSIGV+ Q P V L K V Sbjct: 163 RLKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDV 222 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 + + + K + E K Q Q ++ ++ F + VS++R ++ G Sbjct: 223 DVDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATG 280 Query: 211 RIWTGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256 W G +A + L+D + +++ + + V ++K K Sbjct: 281 EHWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKK 327 >gi|190570851|ref|YP_001975209.1| putative minor capsid protein c [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357123|emb|CAQ54534.1| putative minor capsid protein c [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 353 Score = 85.8 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 99/211 (46%), Gaps = 14/211 (6%) Query: 30 HVEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSP 76 V N A IAI G + +++ E+I + D S +I+ + SP Sbjct: 39 TVNQNIEKTAVIAIHGILTKKPGAFDVFLGMTSYEQIEEQITQALADSSIETIILEIDSP 98 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GG + I + + +K +I ++ A SA Y I+ ++ + + TS VGSIGV+ Sbjct: 99 GGEVNGIFDLADFIYESRAKKRIIAIANDDAYSAAYAIASSAEKVFVSRTSGVGSIGVIA 158 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + F +K G+ +V + K + +P + ++++ +Q VD Y FV+L++ + Sbjct: 159 SHIDQSGFDEKCGIKYTTVFAGSRKNDLNPHEPMTSESLESLQKEVDRLYEMFVQLIARN 218 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 RN+ + G + G +A ++GL D + Sbjct: 219 RNLSIEAIKSTEAGLYF-GEKAVEIGLADGM 248 >gi|156933742|ref|YP_001437658.1| putative periplasmic protease [Cronobacter sakazakii ATCC BAA-894] gi|156531996|gb|ABU76822.1| hypothetical protein ESA_01568 [Cronobacter sakazakii ATCC BAA-894] Length = 349 Score = 85.8 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 110/268 (41%), Gaps = 18/268 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYA 82 P + + +G I+ + + + ++ A ++V L SPGG + Sbjct: 93 GDAAPAGKPTLYVLDFKGSIDAHE--VSALREEVTAVLAVAKPADEVLVRLESPGGVVHG 150 Query: 83 GEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +Q+++ R+ V ++AAS GY+++C +N IVAA +++GSIGV+ Q P Sbjct: 151 YGLAASQLQRLRERQIPLTIAVDKVAASGGYMMACVANNIVAAPFAIIGSIGVVAQIPNF 210 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L + + I+ + K + E + + ++ ++ ++H F V R P Sbjct: 211 NRLLKRNDIDIELHTAGQYKRTLTLLGENTEEGREKFREDLNETHHLFKEFVHSMR--PS 268 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE-VWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +AK+ GL+D + ++ + + ++ + Sbjct: 269 LDIDAVATGEHWYGVQAKEKGLVDEISTSDDLIIARMAER-------EVVSLRYMQRKRL 321 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S + L+ + Q + L Sbjct: 322 MDRFTGSAAQSLDRLLLRWWQRGQKPLL 349 >gi|254448773|ref|ZP_05062230.1| probable protease SohB [gamma proteobacterium HTCC5015] gi|198261614|gb|EDY85902.1| probable protease SohB [gamma proteobacterium HTCC5015] Length = 354 Score = 85.8 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 52/262 (19%), Positives = 110/262 (41%), Gaps = 18/262 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81 S V + G I+ S + + + +D ++V L S GG + Sbjct: 96 KSDDPAQRRRVFVLDFDGDIKASAVDHLREAVSGVLTMARSEDE---VVVRLESAGGMVH 152 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + + +++ ++ +T ++AAS GY+++C +N IVAA +++GSIGV+ Q P Sbjct: 153 SYGLASSQLLRIRQKELPLTICVDKVAASGGYMMACVANHIVAAPFAILGSIGVVAQIPN 212 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E K + ++ ++ ++ F V E+R Sbjct: 213 FHRVLKKHDIDFELITAGEHKRTLTMFGENTDKGREKFREDIEDTHGLFKDFVQENRPAV 272 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G +W G++A + LID + +E + +R + + Sbjct: 273 P--IDAVATGEVWFGSKALEQQLIDKIATSDEYLMNACEDADVYEVRFV------EKKGL 324 Query: 261 CDLKNLSISSLLEDTIPLMKQT 282 + +SI + E + + + Sbjct: 325 QERLGISIQTAFERVVGRLIEA 346 >gi|71278653|ref|YP_267936.1| putative periplasmic protease [Colwellia psychrerythraea 34H] gi|71144393|gb|AAZ24866.1| sohB protein, peptidase U7 family [Colwellia psychrerythraea 34H] Length = 349 Score = 85.8 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 53/262 (20%), Positives = 104/262 (39%), Gaps = 16/262 (6%) Query: 28 SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 E + HV + G I +E + I +++ + + V L S GG + Sbjct: 93 GEDKEPSKSHVFVVDFNGSIDAKEVSSLREEVSAILSVAKPED--EVFVRLESGGGMVHG 150 Query: 83 GEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + +++ V ++AAS GY+++C +N I++A +++GSIGV+ Q P Sbjct: 151 YGLASSQLDRIRQHNIPLTVSVDKVAASGGYMMACVANNIISAPFAILGSIGVIAQVPNF 210 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + + + K + F E K + + ++ ++ F VSE R P Sbjct: 211 NKLLKKHDIDFEQFTAGEFKRTVTMFGENTEKGKEKFIEELEETHVLFKNFVSERR--PS 268 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 + ++ G W G A ++GL+D + ++ Q K+ Sbjct: 269 LDIVKVATGEHWFGTTALELGLVDSIQTSDDYLQ------GKSKSHKVVAIKYEVKKGLA 322 Query: 262 DLKNLSISSLLEDTIPLMKQTK 283 + + + S E + + Q Sbjct: 323 EKFSKAASLSAESFLGKLIQRN 344 >gi|213019344|ref|ZP_03335151.1| putative minor capsid protein c [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995453|gb|EEB56094.1| putative minor capsid protein c [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 340 Score = 85.8 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 101/218 (46%), Gaps = 14/218 (6%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATAL 69 ++ V N A IAI G + +++ E+I + D S + Sbjct: 19 IFKKIKHAVNQNIEKTAVIAIHGILTKKPGAFDVFLGMTSYEQIEEQITQALADSSIETI 78 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 I+ + SPGG + I + + +K +I ++ A SA Y I+ ++ + + TS V Sbjct: 79 ILEIDSPGGEVNGIFDLADFIYESRAKKRIIAIANDDAYSAAYAIASSAEKVFVSRTSGV 138 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ + F +K G+ +V + K + +P + ++++ +Q VD Y F Sbjct: 139 GSIGVIASHIDQSGFDEKCGIKYTTVFAGSRKNDLNPHEPMTSESLESLQKEVDRLYEMF 198 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 V+L++ +RN+ + G + G +A ++GL D + Sbjct: 199 VQLIARNRNLSIEAIKSTEAGLYF-GEKAVEIGLADGM 235 >gi|145629227|ref|ZP_01785026.1| predicted inner membrane peptidase [Haemophilus influenzae 22.1-21] gi|145639162|ref|ZP_01794769.1| predicted inner membrane peptidase [Haemophilus influenzae PittII] gi|144978730|gb|EDJ88453.1| predicted inner membrane peptidase [Haemophilus influenzae 22.1-21] gi|145271724|gb|EDK11634.1| predicted inner membrane peptidase [Haemophilus influenzae PittII] gi|309750742|gb|ADO80726.1| Probable protease SohB [Haemophilus influenzae R2866] Length = 353 Score = 85.8 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 103/226 (45%), Gaps = 11/226 (4%) Query: 38 VARIAIRGQIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 V + G I S+ I I +++ + +++ L SPGG + + + Sbjct: 106 VYVLDFCGDISASETTALREEISAILNVAKPED--EVLLRLESPGGIVHNYGFAASQLSR 163 Query: 93 VKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 +K + +T V ++AAS GY+++C ++ IV+A +++GSIGV+ Q P V L K V Sbjct: 164 LKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDVD 223 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + + + K + E K Q Q ++ ++ F + VS++R ++ G Sbjct: 224 VDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATGE 281 Query: 212 IWTGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256 W G +A + L+D + +++ + + V ++K K Sbjct: 282 HWFGQQAFALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKK 327 >gi|217977711|ref|YP_002361858.1| peptidase S49 [Methylocella silvestris BL2] gi|217503087|gb|ACK50496.1| peptidase S49 [Methylocella silvestris BL2] Length = 445 Score = 85.8 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 91/225 (40%), Gaps = 14/225 (6%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALI 70 + S +ARI I G++ + + ++ D A++ Sbjct: 54 AAAAGSSGYQLQDGLARIPILGELVNRAASLAAAAGFTSYESIGAQLRAAVADPGVRAIL 113 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + + SPGG A +++ N KPV+ V+ +A SA Y I+ ++ IV +S +G Sbjct: 114 LEIDSPGGEASGAMEAGALVREAANAKPVVAFVNGLAGSAAYAIASGASNIVVTPSSSLG 173 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 SIGV+ + + + G+ + + K + + + P A +Q +D Y FV Sbjct: 174 SIGVVLLHLDRSEAIARAGLKPTLISAGAHKTDGTSLHALAPDARARIQASIDELYDLFV 233 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 + V+ R + G + GA A VGL D G + Sbjct: 234 KTVASHRGLTEAVVRATEAGL-FMGARAVSVGLADETGDFKTAMA 277 >gi|71733789|ref|YP_274809.1| periplasmic protease [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487854|ref|ZP_05641895.1| putative periplasmic protease [Pseudomonas syringae pv. tabaci ATCC 11528] gi|71554342|gb|AAZ33553.1| peptidase, U7 family [Pseudomonas syringae pv. phaseolicola 1448A] gi|320328970|gb|EFW84969.1| putative periplasmic protease [Pseudomonas syringae pv. glycinea str. race 4] gi|330985296|gb|EGH83399.1| putative inner membrane peptidase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331008563|gb|EGH88619.1| putative inner membrane peptidase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 340 Score = 85.8 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 51/271 (18%), Positives = 102/271 (37%), Gaps = 15/271 (5%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGG 78 + V + G I+ S + I + ++ D +++ L S GG Sbjct: 79 ALKKEKKQAEPKSRVYVLDFDGDIKASATESMRHEITALLTLATDKD--EVVLRLESGGG 136 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 ++ + +++ +T ++AAS GY+++C N I++A +++GSIGV+ Q Sbjct: 137 MVHSYGLASSQLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQ 196 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P V L K + + + + K + F E K + Q +D ++ F VS R Sbjct: 197 LPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVSSYR 256 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 P ++ G +W G A L+D + +E + + + Sbjct: 257 --PQLSIDEVATGEVWLGMAAVDKLLVDELKTSDEYLAERAKDADVFHLHYV-----QRK 309 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + + +S + + Q W Sbjct: 310 SLQERMGMAAATSADQLATKWWGRLTQQRFW 340 >gi|326570109|gb|EGE20154.1| putative periplasmic protease [Moraxella catarrhalis BC8] Length = 325 Score = 85.4 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 56/273 (20%), Positives = 107/273 (39%), Gaps = 16/273 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81 S+ + + G I+ S +E+ I + +++ L S GG + Sbjct: 62 STDDHTQKAAIYVLDFDGDIKASAVAHLREEISAIISVA---NRGDEVVLRLESGGGQVH 118 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 A + ++K + V ++AAS GY+++C ++ I+A++ +++GSIGV+ Q P Sbjct: 119 AYGLAAAQLVRIKEAGLKLTICVDKIAASGGYMMACTADKIIASDFAVIGSIGVVSQLPN 178 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 FL K V + + K + F E + + Q ++ + F + + R P Sbjct: 179 FHEFLKKHDVQFEQFTAGEYKRTVTIFGENDDEDRAKHQADIERIHELFKGFIHKYR--P 236 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G +W G +A ++GLID +G + L + + P Sbjct: 237 QLDLERVATGEVWFGEDALELGLIDEIGTSD---AYLLDQLKACEAYLLHSRSKP-TLAE 292 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 + S + D I Q L P Sbjct: 293 KIGLAEQLGSSVTDVIGQTGNLLGQALAKFSRP 325 >gi|165975466|ref|YP_001651059.1| putative periplasmic protease [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875567|gb|ABY68615.1| serine protease [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 351 Score = 85.4 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 105/231 (45%), Gaps = 12/231 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAAS 109 +E+ I +++D +++ L SPGG + +Q+++ +T V ++AAS Sbjct: 124 REIDAVISLANKEDE---VLLRLESPGGVVHGYGLAASQLQRLRTHNIPLTVAVDKVAAS 180 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 GY+++C +N IVAA +++GS+GV+ Q P + L K + + + + K + E Sbjct: 181 GGYMMACVANKIVAAPFAIIGSVGVVAQVPNIHRLLKKHEIDVDVMTAGEYKRTVTLVGE 240 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 K Q Q ++ ++ F + V+++R P ++ G W G +A + L+D + Sbjct: 241 NTEKGKQKFQQELEETHQLFKQFVAQNR--PQLDIEKIATGEHWFGKQALALDLVDEINT 298 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 +++ + +++ + + + +E+ I + Sbjct: 299 SDDLLLNAIK------EKEVIELKFKQKKNLTQRLGEQVELSVENVIAKLL 343 >gi|307253763|ref|ZP_07535617.1| protease sohB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258220|ref|ZP_07539963.1| protease sohB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306863247|gb|EFM95187.1| protease sohB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867680|gb|EFM99525.1| protease sohB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 351 Score = 85.4 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 105/231 (45%), Gaps = 12/231 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAAS 109 +E+ I +++D +++ L SPGG + +Q+++ +T V ++AAS Sbjct: 124 REIDAVISLANKEDE---VLLRLESPGGVVHGYGLAASQLQRLRTHNIPLTVAVDKVAAS 180 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 GY+++C +N IVAA +++GS+GV+ Q P + L K + + + + K + E Sbjct: 181 GGYMMACVANKIVAAPFAIIGSVGVVAQVPNIHRLLKKHEIDVDVMTAGEYKRTVTLVGE 240 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 K Q Q ++ ++ F + V+++R P ++ G W G +A + L+D + Sbjct: 241 NTEKGKQKFQQELEEAHQLFKQFVAQNR--PQLDIEKIATGEHWFGKQALALDLVDEINT 298 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 +++ + +++ + + + +E+ I + Sbjct: 299 SDDLLLNAIK------EKEVIELKFKQKKNLTQRLGEQVELSVENVIAKLL 343 >gi|329894909|ref|ZP_08270708.1| peptidase S49 [gamma proteobacterium IMCC3088] gi|328922638|gb|EGG29973.1| peptidase S49 [gamma proteobacterium IMCC3088] Length = 351 Score = 85.4 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 104/250 (41%), Gaps = 12/250 (4%) Query: 36 PHVARIAIRGQIEDS--QELIERIERISRDD-SATALIVSLSSPGGSAYAGEAIFRAIQK 92 P V + G I+ S + L + I + + +I+ L SPGG ++ + + Sbjct: 103 PRVFVMDFDGDIKASAVEGLRKEISTLVANKAEGDTVILRLESPGGMVHSYGLAASQLDR 162 Query: 93 VKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 +KN I V +AAS GY+++C ++ I AA S++GSIGV+ Q P V L K V Sbjct: 163 IKNAGIKLIVSVDAVAASGGYMMACVADEIAAAPFSVIGSIGVVAQVPNVHRLLKKNDVD 222 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 ++ + + K + E + Q + ++S++ F V E R P ++ G Sbjct: 223 VEILTAGKYKRTLTVLGENTEEGRQKFIEDLESTHDLFKAFVQEHR--PNLDIEAVATGE 280 Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 IW G EA GL+D + +++ ++ + + + + Sbjct: 281 IWYGKEAVNKGLVDRIATSDDLILEALQTS------QVFRVSYEQKRTLAERLGFAAEQG 334 Query: 272 LEDTIPLMKQ 281 + + Sbjct: 335 VVKAFEQLWA 344 >gi|260899603|ref|ZP_05907998.1| putative protease SohB [Vibrio parahaemolyticus AQ4037] gi|308106905|gb|EFO44445.1| putative protease SohB [Vibrio parahaemolyticus AQ4037] Length = 345 Score = 85.4 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 102/231 (44%), Gaps = 12/231 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 S PH+ + G I+ +E+ + D +++ L S GG + Sbjct: 97 GSLDSKREPHLFVLDFNGSIDAKEVGSLREEITAILAVAREGDE---VLLRLESGGGMVH 153 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 154 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPN 213 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E KA + ++ ++ F + E R P Sbjct: 214 FNKLLKKHDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHVLFKDFIRERR--P 271 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 + ++ G W G +AK++GL+D + +++ + ++ ++ Sbjct: 272 SLELEKVATGEHWFGTQAKELGLVDEISTSDDLVVAACKEKTVLAVHYVQK 322 >gi|183599262|ref|ZP_02960755.1| hypothetical protein PROSTU_02723 [Providencia stuartii ATCC 25827] gi|188021494|gb|EDU59534.1| hypothetical protein PROSTU_02723 [Providencia stuartii ATCC 25827] Length = 348 Score = 85.4 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 105/249 (42%), Gaps = 16/249 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGS 79 + + P + + +G ++ + E+ + +DD +++ L SPGG Sbjct: 90 AKAGQSTVKKPCLYVLDFKGSMDAREVGSLREEISAILAVAEQDDE---VLLRLESPGGM 146 Query: 80 AYAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + + ++K + V ++AAS GY+++C ++ IVAA +++GSIGV+ Q Sbjct: 147 VHGYGLAASQLSRLKEKNIPLTIAVDKVAASGGYMMACIASKIVAAPFAIIGSIGVVAQV 206 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P + L K V ++ + K + E + + + ++ ++ F + V +R Sbjct: 207 PNIHRLLKKHDVDVELHTAGEYKRTLTMLGENTEQGRKKFIEDLNETHELFKQFVHHNR- 265 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P ++ G W G +A GLID +G +++ S S + K Sbjct: 266 -PSLDIDAVATGEYWYGTQALDKGLIDQIGVSDDIIISAIETKEIIS----IRYTQGKKM 320 Query: 259 WFCDLKNLS 267 ++S Sbjct: 321 LERFTGSMS 329 >gi|307249207|ref|ZP_07531204.1| protease sohB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858731|gb|EFM90790.1| protease sohB [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 351 Score = 85.4 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 105/231 (45%), Gaps = 12/231 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAAS 109 +E+ I +++D +++ L SPGG + +Q+++ +T V ++AAS Sbjct: 124 REIDAVISLANKEDE---VLLRLESPGGVVHGYGLAASQLQRLRTHNIPLTVAVDKVAAS 180 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 GY+++C +N IVAA +++GS+GV+ Q P + L K + + + + K + E Sbjct: 181 GGYMMACVANKIVAAPFAIIGSVGVVAQVPNIHRLLKKHEIDMDVMTAGEYKRTVTLVGE 240 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 K Q Q ++ ++ F + V+++R P ++ G W G +A + L+D + Sbjct: 241 NTKKGKQKFQQELEETHQLFKQFVAQNR--PQLDIEKIATGEHWFGKQALALDLVDEINT 298 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 +++ + +++ + + + +E+ I + Sbjct: 299 SDDLLLNAIK------EKEVIELKFKQKKNLTQRLGEQVELSVENVIAKLL 343 >gi|126174900|ref|YP_001051049.1| putative periplasmic protease [Shewanella baltica OS155] gi|125998105|gb|ABN62180.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Shewanella baltica OS155] Length = 338 Score = 85.4 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 57/255 (22%), Positives = 110/255 (43%), Gaps = 12/255 (4%) Query: 31 VEDNSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEAIF 87 + ++ V I +G I+ ++ L E I I + ++V++ S GG + Sbjct: 87 DDTSTGKVFVIDFKGSIDAAEVASLREEISAILAIAEKGDEVVVNVESGGGMVHGYGLAS 146 Query: 88 RAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 + ++ + P+ V ++AAS GY+++C +N I AA ++VGSIGV+ Q P L Sbjct: 147 SQLDRLRQAEIPLTVCVDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQLPNFNRLLK 206 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 K + + + K + F E + + Q Q+ ++ ++ F V + R P + Sbjct: 207 KHEIDYEQHTAGNFKRTLTVFGENSDEGRQKFQEELEETHILFKAFVGKYR--PELDLVK 264 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 ++ G W G +A ++GL+D + ++V SL A R + D Sbjct: 265 VATGEHWYGQQAIELGLVDAISTSDDVIMSLAA------ERTVYKMRYQVRKKLADKIAH 318 Query: 267 SISSLLEDTIPLMKQ 281 S + + + Sbjct: 319 GASLSVNAIFNRLIE 333 >gi|88811913|ref|ZP_01127166.1| Peptidase S49 [Nitrococcus mobilis Nb-231] gi|88790797|gb|EAR21911.1| Peptidase S49 [Nitrococcus mobilis Nb-231] Length = 329 Score = 85.4 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 102/258 (39%), Gaps = 18/258 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSA 80 +S + P + + +G + S +E+ + D +++ L S GG Sbjct: 82 ANSKDTSDRPRLFILDFQGDLRASATESLREEISAILTAARPQDR---VLLRLESAGGLV 138 Query: 81 YAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + + +++ R + + +AAS GYL++ ++ +VAA ++VGSIGV+ Q P Sbjct: 139 HNYGLAASQLIRLRKRGIHLTISIDRVAASGGYLMASVADCLVAAPFAIVGSIGVIAQVP 198 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 L K V + + K + F E A ++ + + F ++ R Sbjct: 199 NFHRVLKKHEVDFELHTAGEFKRTLTLFGENTDAARAKFREELAEIHQSFKEHIARYR-- 256 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 P + ++ G W G A ++GL+D +G ++ S ++ + Sbjct: 257 PNVEINRIATGEYWLGERACELGLVDELGTSDDFILSRLE------TMELISLRFRRRER 310 Query: 260 FCDLKNLSISSLLEDTIP 277 L SLL+ + Sbjct: 311 MTRRLALGFESLLKRLMG 328 >gi|307944694|ref|ZP_07660033.1| peptidase S49 [Roseibium sp. TrichSKD4] gi|307772121|gb|EFO31343.1| peptidase S49 [Roseibium sp. TrichSKD4] Length = 428 Score = 85.4 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 16/223 (7%) Query: 33 DNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGS 79 S VA I + G + L+E +E A+++ + GG Sbjct: 69 VTSEGVAVIRVSGALSRTSRGWHRECGYMSYPALLETVEEAVTHPGVKAVLLEIDCYGGP 128 Query: 80 AYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 + E RA++ ++ KP+ ++E A SAG+ I A++ I A T L GSIGV+ Sbjct: 129 SQGLEDTARAMRDAAEQSGKPLWAHINEAALSAGFGIGSAASEISIARTGLAGSIGVIAM 188 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 V +K GV K+ K + SPF+ ++ A +Q VD F ++V++ R Sbjct: 189 VQDVSGAAEKSGVKYHVFKAGAAKDDASPFTAMSEDAAARIQADVDGMNDDFCQMVADHR 248 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 + D L +I+ G +A GL+D + ++ L A Sbjct: 249 GMKKDAVAGL-QAQIFRGEKAVAAGLVDQMEPMRDMLARLTAK 290 >gi|255029400|ref|ZP_05301351.1| U7 family peptidase [Listeria monocytogenes LO28] Length = 131 Score = 85.4 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 70/122 (57%) Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 I A++ +L GS+GV+ Q + KLGVS ++KS K S + ++ Sbjct: 7 PPINFASKETLTGSLGVIMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKI 66 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 MQ ++D SY+ FV++V++ R + ++ ++DGRI+ G +AK+ GLID G QE+ ++L Sbjct: 67 MQSMIDDSYNEFVKVVAQGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALEAL 126 Query: 238 YA 239 Sbjct: 127 KK 128 >gi|153816961|ref|ZP_01969628.1| sohB protein, peptidase U7 family [Vibrio cholerae NCTC 8457] gi|126512548|gb|EAZ75142.1| sohB protein, peptidase U7 family [Vibrio cholerae NCTC 8457] Length = 255 Score = 85.4 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 107/260 (41%), Gaps = 16/260 (6%) Query: 35 SPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 PH+ + G I +E + I +++ +++ L + GG + Sbjct: 6 DPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHGYGLASSQ 63 Query: 90 IQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P L K Sbjct: 64 LDRLKAAGLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNFHKLLKKN 123 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 + + + + K + F E KA + + ++ ++ F + E R P ++ Sbjct: 124 DIEFEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHQLFKDFIREHR--PALDLDKVA 181 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 G W G +AK +GL+D + +++ + + + K D Sbjct: 182 TGEHWFGTQAKALGLVDEIQTSDDLIVAACK----SKTVLLLRYTQKKK--LADKLAGVA 235 Query: 269 SSLLEDTIPLMKQTKVQGLW 288 ++ + + + L Sbjct: 236 GDAADNVLLKLISRGQRPLV 255 >gi|330982181|gb|EGH80284.1| putative inner membrane peptidase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 340 Score = 85.4 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 50/272 (18%), Positives = 101/272 (37%), Gaps = 17/272 (6%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPG 77 + V + G I+ S E+ + + D +++ L S G Sbjct: 79 ALKKEKKQAEPKARVYVLDFDGDIKASATESMRHEITALLTLATDRDE---VVLRLESGG 135 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 G ++ + +++ +T ++AAS GY+++C N I++A +++GSIGV+ Sbjct: 136 GMVHSYGLASSQLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVA 195 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 Q P V L K + + + + K + F E K + Q +D ++ F V+ Sbjct: 196 QLPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASY 255 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 R P ++ G +W G A L+D + +E + + + Sbjct: 256 R--PQLSIDEVATGEVWLGMAAVDKLLVDELKTSDEYLAERAKDADVFHLHYV-----QR 308 Query: 257 NYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + + +S + + Q W Sbjct: 309 KSLQERMGMAAATSADQLATKWWGRLTQQRFW 340 >gi|326559247|gb|EGE09678.1| putative periplasmic protease [Moraxella catarrhalis 46P47B1] gi|326560765|gb|EGE11132.1| putative periplasmic protease [Moraxella catarrhalis 103P14B1] gi|326569629|gb|EGE19681.1| putative periplasmic protease [Moraxella catarrhalis BC1] gi|326570847|gb|EGE20871.1| putative periplasmic protease [Moraxella catarrhalis BC7] gi|326574397|gb|EGE24339.1| putative periplasmic protease [Moraxella catarrhalis 101P30B1] gi|326576422|gb|EGE26331.1| putative periplasmic protease [Moraxella catarrhalis O35E] Length = 325 Score = 85.4 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 56/273 (20%), Positives = 107/273 (39%), Gaps = 16/273 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81 S+ + + G I+ S +E+ I + +++ L S GG + Sbjct: 62 STDDHTQKAAIYVLDFDGDIKASAVAHLREEISAIISVA---NRGDEVVLRLESGGGQVH 118 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 A + ++K + V ++AAS GY+++C ++ I+A++ +++GSIGV+ Q P Sbjct: 119 AYGLAAAQLVRIKEAGLKLTICVDKIAASGGYMMACTADKIIASDFAVIGSIGVVSQLPN 178 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 FL K V + + K + F E + + Q ++ + F + + R P Sbjct: 179 FHEFLKKHDVQFEQFTAGEYKRTVTIFGENDDEDRAKHQADIERIHELFKGFIHKYR--P 236 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G +W G +A ++GLID +G + L + + P Sbjct: 237 QLDLERVATGEVWFGEDALELGLIDEIGTSD---AYLLDQLKACEAYLLHSRSKP-TLAE 292 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 + S + D I Q L P Sbjct: 293 KIGLAEQLGSSVTDVIGQTGNLLGQALAKFSRP 325 >gi|46578615|ref|YP_009423.1| minor capsid protein C, degenerate [Desulfovibrio vulgaris str. Hildenborough] gi|46448026|gb|AAS94682.1| minor capsid protein C, degenerate [Desulfovibrio vulgaris str. Hildenborough] Length = 439 Score = 85.4 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 18/221 (8%) Query: 36 PHVARIAIRGQIED--------------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 VA I + G + ++ I D A+++ ++SPGG+ Sbjct: 70 DGVAVIPVMGMLTPRRSWSWGYGYTTGMLDQIRPAIAAALADRGVRAILLDVASPGGTVA 129 Query: 82 AGEAIFRAI--QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + + I ++ K KP+ + + ASA Y+I A+ ++A T+ VGSIGV+ Y Sbjct: 130 GMKELADYIGAERAKGTKPMAAYANGLMASAAYMIGSATGRVLAPATATVGSIGVISVYE 189 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + +K G+S + + KA +P + + +Q+ + + Y F VS S + Sbjct: 190 DWSKWNEKAGLSYAYLTAGQWKAVGNPDTPLADNERAYLQERLTALYRHFTDGVSASMGL 249 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYA 239 +DG+++ +EA GL+ + +E +L Sbjct: 250 DAANLTTWADGKVFVASEA-PQGLVTAIVADREAAIATLAK 289 >gi|326559886|gb|EGE10286.1| putative periplasmic protease [Moraxella catarrhalis 7169] Length = 325 Score = 85.4 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 56/273 (20%), Positives = 107/273 (39%), Gaps = 16/273 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81 S+ + + G I+ S +E+ I + +++ L S GG + Sbjct: 62 STDDHTQKAAIYVLDFDGDIKASAVAHLREEISAIISVA---NRGDEVVLRLESGGGQVH 118 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 A + ++K + V ++AAS GY+++C ++ I+A++ +++GSIGV+ Q P Sbjct: 119 AYGLAAAQLVRIKEAGLKLTICVDKIAASGGYMMACTADKIIASDFAVIGSIGVVSQLPN 178 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 FL K V + + K + F E + + Q ++ + F + + R P Sbjct: 179 FHEFLKKHDVQFEQFTAGEYKRTVTIFGENDDEDRAKHQADIERIHELFKGFIHKYR--P 236 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G +W G +A ++GLID +G + L + + P Sbjct: 237 QLDLERVATGEVWFGEDALELGLIDEIGTSD---AYLLDQLKACEAYLLHSRSKP-TLAE 292 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 + S + D I Q L P Sbjct: 293 KIGLAEQLGSSVTDVIGQTGNLLGQALAKFSRP 325 >gi|296113403|ref|YP_003627341.1| S49 family peptidase [Moraxella catarrhalis RH4] gi|295921097|gb|ADG61448.1| S49 family peptidase [Moraxella catarrhalis RH4] gi|326566604|gb|EGE16747.1| putative periplasmic protease [Moraxella catarrhalis 12P80B1] gi|326576010|gb|EGE25933.1| putative periplasmic protease [Moraxella catarrhalis CO72] Length = 325 Score = 85.4 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 56/273 (20%), Positives = 107/273 (39%), Gaps = 16/273 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81 S+ + + G I+ S +E+ I + +++ L S GG + Sbjct: 62 STDDHTQKAAIYVLDFDGDIKASAVAHLREEISAIISVA---NRGDEVVLRLESGGGQVH 118 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 A + ++K + V ++AAS GY+++C ++ I+A++ +++GSIGV+ Q P Sbjct: 119 AYGLAAAQLVRIKEAGLKLTICVDKIAASGGYMMACTADKIIASDFAVIGSIGVVSQLPN 178 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 FL K V + + K + F E + + Q ++ + F + + R P Sbjct: 179 FHEFLKKHDVQFEQFTAGEYKRTVTIFGENDDEDRAKHQADIERIHELFKGFIHKYR--P 236 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G +W G +A ++GLID +G + L + + P Sbjct: 237 QLDLERVATGEVWFGEDALELGLIDEIGTSD---AYLLDQLKACEAYLLHSRSKP-TLAE 292 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 + S + D I Q L P Sbjct: 293 KIGLAEQLGSSVTDVIGQTGNLLGQALAKFSRP 325 >gi|260773130|ref|ZP_05882046.1| SohB protein peptidase U7 family [Vibrio metschnikovii CIP 69.14] gi|260612269|gb|EEX37472.1| SohB protein peptidase U7 family [Vibrio metschnikovii CIP 69.14] Length = 331 Score = 85.4 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 110/267 (41%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 PH+ + G I +E + I +++ ++V L + GG + Sbjct: 75 GELDSKREPHLFVLDFHGSIDAKEVSSLREEVTAILAVAQ--PGDEVLVRLETGGGMVHG 132 Query: 83 GEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++K + P+ V ++AAS GY+++C ++ IVAA ++VGSIGV+ Q P Sbjct: 133 YGLASSQLDRLKAAQLPLTIAVDKVAASGGYMMACIADKIVAAPFAIVGSIGVIAQIPNF 192 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L + + + + + K + F E KA + + ++ ++ F + + R P Sbjct: 193 HKLLKRNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKQELEETHGLFKDFIRDHR--PA 250 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G++AK +GL+D + +++ + + + + Sbjct: 251 LDLDKVATGEHWFGSQAKALGLVDEIATSDDLIVNACK------EKTVLAVRYVRKKKLA 304 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D + S + + + + L Sbjct: 305 DKLAGTASQAADAVLLKLLSRGQRPLM 331 >gi|269966535|ref|ZP_06180618.1| sohB protein, peptidase U7 family [Vibrio alginolyticus 40B] gi|269828879|gb|EEZ83130.1| sohB protein, peptidase U7 family [Vibrio alginolyticus 40B] Length = 353 Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 54/263 (20%), Positives = 109/263 (41%), Gaps = 17/263 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 S PH+ + G I+ +E+ + D +++ L S GG + Sbjct: 97 GSLDSKREPHLFVLDFNGSIDAKEVASLREEITAILAVAREGDE---VLLRLESGGGMVH 153 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 154 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPN 213 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E KA + ++ ++ F + E R P Sbjct: 214 FNKLLKKHDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHVLFKDFIRERR--P 271 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +AK++GL+D + +++ + S+ + K Sbjct: 272 SLDLDKVATGEHWFGTQAKELGLVDDISTSDDIVVAACKDKTVLSVHYV-----QKKKLA 326 Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283 L ++ + L ++ + Sbjct: 327 DKLAGVAGKVADSVILKLAERGQ 349 >gi|74318647|ref|YP_316387.1| putative periplasmic protease [Thiobacillus denitrificans ATCC 25259] gi|74058142|gb|AAZ98582.1| serine protease SohB [Thiobacillus denitrificans ATCC 25259] Length = 333 Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 100/262 (38%), Gaps = 33/262 (12%) Query: 39 ARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 + +G I S +E+ +E A++V L S GG + + Sbjct: 93 YLLDFKGDIRASAVAALREEVSAVLEVA---QPGDAVLVRLESGGGLVNRYGLGAAQLLR 149 Query: 93 VKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 +++ + +T + + A++G + A + IVA+ +LVGSIGV+ Q P +L + Sbjct: 150 IRDAQLPLTVMVDSVAASGGYLMAAVADTIVASPFALVGSIGVVAQTPNFHRWLRARDID 209 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + + K + F E +++ +D + F V R P ++ G Sbjct: 210 WEQFTAGQYKRTVTLFGENTETGRAKLREELDDIHALFRAFVQARR--PQLDVDKVATGE 267 Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 W G+ A ++GL+D + +E+ ++ G + + Sbjct: 268 TWLGSRALELGLVDEIATSDELIRAACRRGKVLH------------------LSFQRKAR 309 Query: 272 LEDTIPLMKQTKVQGLWAVWNP 293 L + + QT G +W P Sbjct: 310 LTERVGRAAQTMWDG---IWQP 328 >gi|153001229|ref|YP_001366910.1| putative periplasmic protease [Shewanella baltica OS185] gi|151365847|gb|ABS08847.1| Peptidase S49 domain protein [Shewanella baltica OS185] Length = 338 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 109/252 (43%), Gaps = 12/252 (4%) Query: 34 NSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEAIFRAI 90 ++ V I +G I+ ++ L E I I + ++V++ S GG + + Sbjct: 90 STGKVFVIDFKGSIDAAEVASLREEISAILAIAEKGDEVVVNVESGGGMVHGYGLASSQL 149 Query: 91 QKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 ++ + P+ V ++AAS GY+++C +N I AA ++VGSIGV+ Q P L K Sbjct: 150 DRLRQADIPLTVCVDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQLPNFNRLLKKHE 209 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + + + K + F E + + Q Q+ ++ ++ F V + R P + ++ Sbjct: 210 IDYEQHTAGNFKRTLTVFGENSDEGRQKFQEELEETHVLFKAFVGKYR--PELDLVKVAT 267 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 G W G +A ++GL+D + ++V SL A R + D S Sbjct: 268 GEHWYGQQAIELGLVDAISTSDDVIMSLAA------ERTVYKMRYQVRKKLADKIAHGAS 321 Query: 270 SLLEDTIPLMKQ 281 + + + Sbjct: 322 LSVNAIFNRLIE 333 >gi|10957305|ref|NP_058329.1| hypothetical protein R27_p116 [Salmonella typhi] gi|18466650|ref|NP_569458.1| putative peptidase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|7800358|gb|AAF69954.1|AF250878_115 orf; hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|16505966|emb|CAD09852.1| putative peptidase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|145849084|emb|CAM91648.1| putative transmembrane peptidase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|313651407|gb|EFS15803.1| peptidase family S49 family protein [Shigella flexneri 2a str. 2457T] Length = 393 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 59/367 (16%), Positives = 112/367 (30%), Gaps = 80/367 (21%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNS------PHVARIAIRGQIEDSQE----- 52 + + T V++SL+ L S + + H+A + I G++ E Sbjct: 27 MFRIHTTSKVVISLLALAAAGVSAFNIYDKYQESEGRMDHIAVVRISGEMGTGSEVGDGS 86 Query: 53 -LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI----------- 100 + + + + A A+I+ S GG I+R I +++ + I Sbjct: 87 VIATALAKAYNNPHAKAVIIEAESGGGGPSDAIIIYRQINALRSHQQKIERVSHAESTSK 146 Query: 101 --------------TEVHEMAASAGYLISCASNIIVAAET------------SLVGSIGV 134 E++ + A + ++ + S Sbjct: 147 PRNTSDHSASRSQADSNAELSKRNTLDVLSAGSGHFISDMENSYKPIIVSVKGICASACY 206 Query: 135 LFQYPYVKPFLD----------------------KLGVSIKSVKSSPMKAEPSPFSEVNP 172 P + D +GV + + + K P+ ++ Sbjct: 207 YAVSPADAIYADSSALTGSIGVRMDHWNLSRVMDTVGVKNEPLTAGEFKDALDPYHPLSD 266 Query: 173 KAVQMMQDVV-DSSYHWFVRLVSESRNIPY-----DKTLVLSDGRIWTGAEAKKVGLIDV 226 MQ + D+ + F+ V + R + L GR+WT +A + GLID Sbjct: 267 ATRDFMQKQILDAMHEQFIADVEQGRGKKLLSRPEADAVALYSGRVWTTQQAIRYGLIDG 326 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 EV L + S K +N P+ L L S +T+ + Sbjct: 327 DLTPVEVRSRLSQM---YSTTIFKTYNEPQRSLRSALGMLMSLSTNVETLAGTTSRILDS 383 Query: 287 LWAVWNP 293 + A P Sbjct: 384 VQATSYP 390 >gi|229515443|ref|ZP_04404902.1| SohB protein peptidase U7 family [Vibrio cholerae TMA 21] gi|229347212|gb|EEO12172.1| SohB protein peptidase U7 family [Vibrio cholerae TMA 21] Length = 356 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 105/267 (39%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 PH+ + G I +E + I +++ +++ L + GG + Sbjct: 100 GELESKRDPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 157 Query: 83 GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 158 YGLASSQLDRLKAAGLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 217 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + + + + K + F E KA + ++ ++ F + + R P Sbjct: 218 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKARDKFKLELEETHQLFKDFIRDHR--PA 275 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +AK +GL+D + +++ + + K Sbjct: 276 LDLDKVATGEHWFGTQAKALGLVDEIQTSDDLIVEACK----NKTVLLLRYTQKKK--LA 329 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D ++ + + + L Sbjct: 330 DKLAGVAGDAADNVLMKLISRGQRPLV 356 >gi|300723345|ref|YP_003712648.1| putative peptidase [Xenorhabdus nematophila ATCC 19061] gi|297629865|emb|CBJ90483.1| putative peptidase [Xenorhabdus nematophila ATCC 19061] Length = 348 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 103/247 (41%), Gaps = 12/247 (4%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIE--DSQELIERIER--ISRDDSATALIVSLSSPGGS 79 + + P++ + +G ++ + L E I D +++ L SPGG Sbjct: 88 AAAKTGQKGLQKPNLYVLDFKGSMDAHEVDSLREEISAILAVADKK-DEVLLRLESPGGM 146 Query: 80 AYAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + + +++ + V ++AAS GY+++C ++ I+AA +++GSIGV+ Q Sbjct: 147 VHGYGLAASQLTRLRQKGIRLTVVVDKVAASGGYMMACVADRIIAAPFAIIGSIGVVAQL 206 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P + L K + ++ + K + F E + + Q+ ++ ++ F + + R Sbjct: 207 PNIHRLLKKNDIDVELHTAGEYKRTLTMFGENTEQGRKKFQEDLNETHKLFKSFIYQHR- 265 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P ++ G W G +AK+ GLID VG ++ ++ K Sbjct: 266 -PSLDVESVATGEYWYGTQAKEHGLIDEVGVSDDFLIEQIDHCEVIG----VSYSRRKRV 320 Query: 259 WFCDLKN 265 + Sbjct: 321 VERVMGG 327 >gi|262393791|ref|YP_003285645.1| SohB protein peptidase U7 family [Vibrio sp. Ex25] gi|262337385|gb|ACY51180.1| SohB protein peptidase U7 family [Vibrio sp. Ex25] Length = 353 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 54/263 (20%), Positives = 109/263 (41%), Gaps = 17/263 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 S PH+ + G I+ +E+ + D +++ L S GG + Sbjct: 97 GSLDSKREPHLFVLDFNGSIDAKEVASLREEITAILAVAREGDE---VLLRLESGGGMVH 153 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 154 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPN 213 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E KA + ++ ++ F + E R P Sbjct: 214 FNKLLKKHDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHVLFKDFIRERR--P 271 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +AK++GL+D + +++ + S+ + K Sbjct: 272 SLDLDKVATGEHWFGTQAKELGLVDDISTSDDIVVAACKDKTVLSVHYV-----QKKKLA 326 Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283 L ++ + L ++ + Sbjct: 327 DKLAGVAGKIADSVILKLAERGQ 349 >gi|160875901|ref|YP_001555217.1| putative periplasmic protease [Shewanella baltica OS195] gi|160861423|gb|ABX49957.1| Peptidase S49 domain protein [Shewanella baltica OS195] gi|315268092|gb|ADT94945.1| Peptidase S49 domain protein [Shewanella baltica OS678] Length = 338 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 109/252 (43%), Gaps = 12/252 (4%) Query: 34 NSPHVARIAIRGQIEDSQ--ELIERIERISR-DDSATALIVSLSSPGGSAYAGEAIFRAI 90 ++ V I +G I+ ++ L E I I + ++V++ S GG + + Sbjct: 90 STGKVFVIDFKGSIDAAEVASLREEISAILAIAEKGDEVVVNVESGGGMVHGYGLASSQL 149 Query: 91 QKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 ++ + P+ V ++AAS GY+++C +N I AA ++VGSIGV+ Q P L K Sbjct: 150 DRLRQADIPLTVCVDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQLPNFNRLLKKHE 209 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + + + K + F E + + Q Q+ ++ ++ F V + R P + ++ Sbjct: 210 IDYEQHTAGNFKRTLTVFGENSDEGRQKFQEELEETHVLFKAFVGKYR--PELDLVKVAT 267 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 G W G +A ++GL+D + ++V SL A R + D S Sbjct: 268 GEHWYGQQAIELGLVDAISTSDDVIMSLAA------ERTVYKMRYQVRKKLADKIAHGAS 321 Query: 270 SLLEDTIPLMKQ 281 + + + Sbjct: 322 LSVNAIFNRLIE 333 >gi|68250286|ref|YP_249398.1| putative periplasmic protease [Haemophilus influenzae 86-028NP] gi|148825774|ref|YP_001290527.1| putative periplasmic protease [Haemophilus influenzae PittEE] gi|229845217|ref|ZP_04465350.1| putative periplasmic protease [Haemophilus influenzae 6P18H1] gi|68058485|gb|AAX88738.1| possible protease SohB [Haemophilus influenzae 86-028NP] gi|148715934|gb|ABQ98144.1| predicted inner membrane peptidase [Haemophilus influenzae PittEE] gi|229811812|gb|EEP47508.1| putative periplasmic protease [Haemophilus influenzae 6P18H1] gi|309972922|gb|ADO96123.1| Probable protease SohB [Haemophilus influenzae R2846] Length = 353 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 103/226 (45%), Gaps = 11/226 (4%) Query: 38 VARIAIRGQIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 V + G I S+ I I +++ + +++ L SPGG + + + Sbjct: 106 VYVLDFCGDISASETTALREEISAILNVAKPED--EVLLRLESPGGIVHNYGFAASQLSR 163 Query: 93 VKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 +K + +T V ++AAS GY+++C ++ IV+A +++GSIGV+ Q P V L K V Sbjct: 164 LKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDVD 223 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + + + K + E K Q Q ++ ++ F + VS++R ++ G Sbjct: 224 VDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATGE 281 Query: 212 IWTGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256 W G +A + L+D + +++ + + V ++K K Sbjct: 282 HWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKK 327 >gi|171913527|ref|ZP_02928997.1| peptidase S49 [Verrucomicrobium spinosum DSM 4136] Length = 306 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 49/217 (22%), Positives = 85/217 (39%), Gaps = 20/217 (9%) Query: 38 VARIAIRGQIEDSQELIE--------------RIERISRDDSATALIVSLSSPGGSAYAG 83 VA + I G + + +E I++ + +++ ++SPGG Sbjct: 93 VAVVPIYGILAKNAGFMEEACQGLSDINGAMTAIQQAMKAKEIKTIVLDVASPGGQVTGI 152 Query: 84 EAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 I A+++ K V T E ASA Y I ++ I +S VGSIG + Sbjct: 153 REIAAAVREATQVRGKTVYTFSDERIASAAYWIGSQADEIYVTPSSTVGSIGTYLAWLDP 212 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + G+ ++ + K P + +++Q V+ WF VS +R Sbjct: 213 SMKMAMEGLRLEYFGAGTHKGMGLPGKPLTEADRKLLQGKVEEINGWFKDGVSAAR---P 269 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSL 237 G+ ++G EA K+ L D + G EE + L Sbjct: 270 KVADSTMQGQTFSGEEAVKLKLADGLVGSWEEFIELL 306 >gi|254369756|ref|ZP_04985766.1| hypothetical protein FTAG_01090 [Francisella tularensis subsp. holarctica FSC022] gi|157122715|gb|EDO66844.1| hypothetical protein FTAG_01090 [Francisella tularensis subsp. holarctica FSC022] Length = 338 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 101/249 (40%), Gaps = 8/249 (3%) Query: 29 SHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAGEA 85 + + I +G I+ S + L + I + +IV + S GG Sbjct: 86 DKQDKPKQKIFVINFKGDIDASQVENLRNEVSAILAVANIEDEIIVRIDSLGGVVNGYGF 145 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYVKPF 144 +++++ +T + A++G + A + I+AA ++VGSIGV+ P ++ Sbjct: 146 AAAQLERIRQAGINLTVCIDKVAASGGYMMSAVAHKIIAAPFAIVGSIGVVGTIPNIREL 205 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L+K G++++ S K + + + ++S + F + + R P Sbjct: 206 LEKNGINVEMHTSGEYKRTLTTVGVNTEEGRNKFKQDLESIHQLFKKHILVYR--PSLDI 263 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 ++ G W G +A ++GL+D + ++ L L ++ ++ + + Sbjct: 264 DKVATGEYWFGKDALELGLVDKIQTYDDYLIDL--LKKQHNVYEVSYVIKKEKGFLRSKF 321 Query: 265 NLSISSLLE 273 ++ ++ Sbjct: 322 SMLKRAITN 330 >gi|269138901|ref|YP_003295602.1| predicted inner membrane peptidase [Edwardsiella tarda EIB202] gi|267984562|gb|ACY84391.1| predicted inner membrane peptidase [Edwardsiella tarda EIB202] gi|304558887|gb|ADM41551.1| Putative protease SohB [Edwardsiella tarda FL6-60] Length = 348 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 109/260 (41%), Gaps = 12/260 (4%) Query: 32 EDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGEAIFR 88 P V + G ++ + L E I ++ ++++ L SPGG + Sbjct: 96 AAEKPCVYVLDFTGSMDAHEVGSLREEISAVLAVAGPQDSVLLRLESPGGVVHGYGLAAS 155 Query: 89 AIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 +++++ +T V ++AAS GY+++C ++ IVAA +++GSIGV+ Q P +L K Sbjct: 156 QLKRLRQAGVRLTVAVDKVAASGGYMMACVADRIVAAPFAIIGSIGVVAQIPNFNRWLKK 215 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 V ++ + K + F E + +D ++ F + V R P + Sbjct: 216 NDVDVELHTAGEFKRTLTLFGENTDAGREKFCQELDETHLLFKQFVQ--RQRPSLDVDSV 273 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G W G +A + GL+D + +++ + +R + + F ++ Sbjct: 274 ATGEHWYGEQALEKGLVDALSTSDDLLIAEMEQADVIGVRYV------RRKGFMARMGMA 327 Query: 268 ISSLLEDTIPLMKQTKVQGL 287 + + + Q + L Sbjct: 328 AAQGADTLLLRWWQRSQRPL 347 >gi|212213146|ref|YP_002304082.1| putative periplasmic protease [Coxiella burnetii CbuG_Q212] gi|212011556|gb|ACJ18937.1| non-proteolytic protein, peptidase family S49 [Coxiella burnetii CbuG_Q212] Length = 338 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 111/280 (39%), Gaps = 18/280 (6%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS------QELIERIERIS 61 IK +Y + + + + + + +G I S +E+ + + Sbjct: 69 IKDKYELKRFLKSQKKEKKKKPNTTEAKKRIFVLNFQGDIRASAVCALREEITAVLTTAT 128 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNI 120 RDD +++ L S GG + +Q++ ++ + ++A S GYL++C ++ Sbjct: 129 RDDE---VLLRLESGGGVVHGYGLAASQLQRIKDAHIKLVIAIDKVAVSGGYLMACVADR 185 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 I+AA ++VGSIGVL Q P +L K + + V + K + F E K M++ Sbjct: 186 IIAAPFAIVGSIGVLAQLPNFHRYLRKKYIDFEQVMAGDYKRTLTLFGENTEKGRAKMKE 245 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 V+ ++ F + E R ++ G W ++A + L+D + ++ + Sbjct: 246 EVEETHTLFKSFIKEHRQ--EVDVEQIATGEHWYASKALDLRLVDELKTSDDYLLAASQ- 302 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 + + + + + + S + + Sbjct: 303 -----NYDLFEVQYKRKPPLAERVSHNASRAYHQLLSGLM 337 >gi|46581275|ref|YP_012083.1| minor capsid protein C [Desulfovibrio vulgaris str. Hildenborough] gi|46450696|gb|AAS97343.1| minor capsid protein C [Desulfovibrio vulgaris str. Hildenborough] gi|311234940|gb|ADP87794.1| peptidase S49 [Desulfovibrio vulgaris RCH1] Length = 439 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 18/221 (8%) Query: 36 PHVARIAIRGQIED--------------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 VA I + G + ++ I D A+++ ++SPGG+ Sbjct: 70 DGVAVIPVMGMLTPRRSWSWGYGYTTGMLDQIRPAIASALADRGVRAILLDVASPGGTVA 129 Query: 82 AGEAIFRAI--QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + + I ++ K KP+ + + ASA Y+I A+ ++A T+ VGSIGV+ Y Sbjct: 130 GMKELADYIGAERAKGTKPMAAYANGLMASAAYMIGSATGRVLAPATATVGSIGVISVYE 189 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + +K G+S + + KA +P + + +Q+ + + Y F VS S + Sbjct: 190 NWSKWNEKAGLSYAYLTAGQWKAVGNPDTPLADNERAYLQERLTALYRHFTDGVSASMGL 249 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYA 239 +DG+++ +EA GL+ + +E +L Sbjct: 250 DAANLTTWADGKVFVASEA-PQGLVTAIVADREAAIATLAK 289 >gi|238785978|ref|ZP_04629941.1| Protein C serine peptidase MEROPS family S49 [Yersinia bercovieri ATCC 43970] gi|238713126|gb|EEQ05175.1| Protein C serine peptidase MEROPS family S49 [Yersinia bercovieri ATCC 43970] Length = 260 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 14/220 (6%) Query: 38 VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 VA I I+G + + DD+ + + SPGG Sbjct: 42 VAVIPIQGTLVQKLGTLRPYSGMTGYDGIRASFLTAMNDDAVKGICFDIDSPGGEVAGCF 101 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + I + KP+ + + E A SA Y ++ A++ I+ T VGSIGV+ + Sbjct: 102 DLVDEIYAARGAKPIWSILSENAYSAAYALASAADRIIVPRTGGVGSIGVIVMHVDWSQR 161 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + GV + + KAE +P+ ++ +A + +Q VD FV VS +R I Sbjct: 162 IKSDGVQVTIITFGSRKAESNPYEALSEEAKKAIQSDVDEMGRLFVSTVSRNRGIAERTI 221 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 ++ + A+ ++GL D V + ++ L L ++ Sbjct: 222 RD-TEAACFLAADGVQLGLADQVAPPDVAFRDLLTLVGEK 260 >gi|320108129|ref|YP_004183719.1| peptidase S49 [Terriglobus saanensis SP1PR4] gi|319926650|gb|ADV83725.1| peptidase S49 [Terriglobus saanensis SP1PR4] Length = 248 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 93/213 (43%), Gaps = 11/213 (5%) Query: 2 EFVLKKIKTRYVMLSLVTLTVVYF---------SWSSHVEDNSPHVARIAIRGQIEDSQE 52 F L I +ML+L+ V+ S + + +S + I + G I + Sbjct: 31 GFWLLIIGGSLLMLALLIAGTVWSTMQSLKADDSEENGIATSSKKIGVIEVTGVILTADT 90 Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASA 110 L +++ +++ D A+I+ ++SPGG A A + +F + +++ K +I + + AS Sbjct: 91 LSQQMRKMAADSDVKAIILHINSPGGGAAASQELFNEVVRIRKESHKKIIASIESVGASG 150 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 Y I+ + I A + S+VGSIGV+ ++ L + ++K+ +K P ++ Sbjct: 151 AYYIASGCDRIYANDASVVGSIGVIMEWTNYGELLRWAKLKNVTLKAGELKDAGDPTRDL 210 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 PK + D + +R+ Sbjct: 211 TPKEQSVWSDRRRCADRGLSCERRRARSSEPQA 243 >gi|49475134|ref|YP_033175.1| Phage protein gp18 [Bartonella henselae str. Houston-1] gi|49237939|emb|CAF27143.1| Phage protein gp18 [Bartonella henselae str. Houston-1] Length = 369 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 85/220 (38%), Gaps = 16/220 (7%) Query: 35 SPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 ++A I + G + + L A+++ + S GG A Sbjct: 87 QNNIAIIPVHGTLVRRSAWLGALSGLTSYEGLRASFREAIAQPDVNAVLLDIDSGGGEAG 146 Query: 82 AGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + Q + + KP+ +E A SA Y I+CA++ I A T +VGSIGV+ + Sbjct: 147 GIFDLVEEFQTLSKQYAKPIWAHANEFACSAAYAIACAASQIWIARTGVVGSIGVVCAHL 206 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 +K G+ V K + ++ A MQ Y FV V+++R + Sbjct: 207 DQSLADEKQGLKWTFVFEGDHKTHGNSHEPLSDTAQIKMQADCALLYEMFVDWVAKNRPL 266 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 D + G +A ++GL D G + ++L Sbjct: 267 SADAIRDTK-AETFIGIQALELGLADAQGTLAQALEALTD 305 >gi|326794648|ref|YP_004312468.1| peptidase S49 domain protein [Marinomonas mediterranea MMB-1] gi|326545412|gb|ADZ90632.1| Peptidase S49 domain protein [Marinomonas mediterranea MMB-1] Length = 337 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 109/255 (42%), Gaps = 16/255 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81 + V + G I+ S +E+ + ++DD ++V L S GG + Sbjct: 80 KKSPATDKKKVFVLDFDGDIKASAVESMRREITAILAVATKDDE---VVVRLESGGGMVH 136 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + +Q++K+ +T ++AAS GY+++C ++ I+AA +++GSIGV+ Q P Sbjct: 137 SYGLAASQLQRIKDAGVSLTICVDKVAASGGYMMACVADKIIAAPFAILGSIGVVAQIPN 196 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + LDK + ++ + K + E + + + ++ ++ F V+ R Sbjct: 197 IHRLLDKNNIDVELHTAGKFKRTLTVIGENTDEGREKFKQDLEDTHVLFKDFVASQR--A 254 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G++A + LID V + Y +++ PK+ Sbjct: 255 VLDIESVATGETWYGSQAVENKLIDEVKTSDTYIVDQYDNANVFK----VEYSEPKSVAE 310 Query: 261 CDLKNLSISSLLEDT 275 ++ + ++ T Sbjct: 311 RLGLSVLSAVEVKAT 325 >gi|270262110|ref|ZP_06190382.1| hypothetical protein SOD_b03170 [Serratia odorifera 4Rx13] gi|270043986|gb|EFA17078.1| hypothetical protein SOD_b03170 [Serratia odorifera 4Rx13] Length = 348 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 54/268 (20%), Positives = 115/268 (42%), Gaps = 14/268 (5%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER--ISRDDSATALIVSLSSPGGSAY 81 + + VE P + + +G ++ + L E I +++ L SPGG + Sbjct: 90 AKAGAVEATKPCLYVLDFKGSMDAHEVTSLREEISAVLAVATPQ-DEVLLRLESPGGVVH 148 Query: 82 AGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + +++ +T V ++AAS GY+++C ++ IVAA +++GSIGV+ Q P Sbjct: 149 GYGLASSQLARLRTGGIRLTVAVDKVAASGGYMMACVADRIVAAPFAIIGSIGVVAQIPN 208 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + ++ + K + F E + + ++ ++ ++ F V + R P Sbjct: 209 FHRLLKKNDIDVELHTAGQFKRTLTLFGENTEQGREKFREDLNETHELFKEFVHQQR--P 266 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G++AK+ GLID +G +++ + + ++ + Sbjct: 267 SLDIDSVATGEHWFGSQAKEKGLIDAIGTSDDLL--IAEM----ENHEVVGVRYTRRKRL 320 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S + ++ + Q + L Sbjct: 321 MDRFTGSAAESVDRLLLRWWQRGEKPLL 348 >gi|15602450|ref|NP_245522.1| putative periplasmic protease [Pasteurella multocida subsp. multocida str. Pm70] gi|12720854|gb|AAK02669.1| SohB [Pasteurella multocida subsp. multocida str. Pm70] Length = 353 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 109/269 (40%), Gaps = 17/269 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSA 80 +++ P + + +G I S +E+ I +D ++V L SPGG Sbjct: 95 GEDIADEHKPRLYVLQFKGDIAASATSALREEVSTIIGVAKPEDE---VLVRLESPGGMV 151 Query: 81 YAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + + ++K +T V ++AAS GY+++C ++ IVAA +++GS+GV+ Q P Sbjct: 152 HGYGLAASQLLRLKQHGIKLTVAVDKVAASGGYMMACVADTIVAAPFAILGSVGVVAQIP 211 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + L K V + + + K + E K Q Q ++ ++ F + V+++R Sbjct: 212 NIHRLLKKHDVDVDVMTAGEYKRTMTVLGENTEKGKQKFQQELEETHQLFKQFVTQNR-- 269 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 P ++ G W G +A + L+D + +++ L + + + Sbjct: 270 PQVNIEEIATGEHWFGQQALGLHLVDAISTSDDLI-----LNAIKENKTVLSVKYHVKQS 324 Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 F + + + L Sbjct: 325 FLQKVGKQAEESTDAFLLRWLRRNNSTLL 353 >gi|285017031|ref|YP_003374742.1| hypothetical protein XALc_0210 [Xanthomonas albilineans GPE PC73] gi|283472249|emb|CBA14755.1| hypothetical phage-related protein [Xanthomonas albilineans] Length = 433 Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 85/220 (38%), Gaps = 16/220 (7%) Query: 36 PHVARIAIRGQ----------IEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYA 82 VA + I G I + L I+ + A+++ ++SPGG A Sbjct: 54 DGVAVVPITGPVFRYANLFTEISGATSTQVLATDIQSALDNPYVRAIVLDINSPGGEATG 113 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + + I KP+ ASA Y + A++ IV +T+++GSIGV+ Y Sbjct: 114 INELAKLIHAGSACKPIKAYAGGTMASAAYWLGAAADEIVIDDTAVLGSIGVVMSYLDTS 173 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 ++ V+ ++ + +Q VD+ FV V+ RN D Sbjct: 174 AR--DAKSDVRRVEIVSSQSPDKRVDPSTDEGRAKVQAQVDALADVFVAAVARYRNTSTD 231 Query: 203 KTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 L G + GA+A K G+ D +G E V L Sbjct: 232 TVLSDFGRGGVRVGADAVKAGMADRIGSLESVIAELAGSA 271 >gi|145631466|ref|ZP_01787235.1| predicted inner membrane peptidase [Haemophilus influenzae R3021] gi|144982896|gb|EDJ90409.1| predicted inner membrane peptidase [Haemophilus influenzae R3021] Length = 353 Score = 84.7 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 103/226 (45%), Gaps = 11/226 (4%) Query: 38 VARIAIRGQIEDSQEL-----IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 V + G I S+ I I +++ + +++ L SPGG + + + Sbjct: 106 VYVLDFCGDISASETTALREEISAILNVAKPED--EVLLRLESPGGIVHNYGFAASQLSR 163 Query: 93 VKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 +K + +T V ++AAS GY+++C ++ IV+A +++GSIGV+ Q P V L K V Sbjct: 164 LKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDVD 223 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + + + K + E K Q Q ++ ++ F + VS++R ++ G Sbjct: 224 VDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATGE 281 Query: 212 IWTGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256 W G +A + L+D + +++ + + V ++K K Sbjct: 282 HWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKK 327 >gi|262165297|ref|ZP_06033034.1| SohB protein peptidase U7 family [Vibrio mimicus VM223] gi|262025013|gb|EEY43681.1| SohB protein peptidase U7 family [Vibrio mimicus VM223] Length = 353 Score = 84.7 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 49/267 (18%), Positives = 106/267 (39%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 PH+ + G I +E + I +++ +++ L + GG + Sbjct: 97 GELESKREPHLFVLDFHGSIDAKEVASLREEVSAILAVAKAGD--EVLLRLETGGGMVHG 154 Query: 83 GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 155 YGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 214 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + + + + K + F E KA + + ++ ++ F + + R P Sbjct: 215 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKLELEETHQLFKDFIRDHR--PA 272 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +AK +GL+D + +++ + + + Sbjct: 273 LDLDKVATGEHWFGTQAKTLGLVDEIQTSDDLIVEACK------NKTVLLLRYVQKKKLA 326 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D ++ + + + L Sbjct: 327 DKLAGVAGDAADNVLMKLISRGQRPLV 353 >gi|271500646|ref|YP_003333671.1| Peptidase S49 domain-containing protein [Dickeya dadantii Ech586] gi|270344201|gb|ACZ76966.1| Peptidase S49 domain protein [Dickeya dadantii Ech586] Length = 348 Score = 84.7 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 112/258 (43%), Gaps = 18/258 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGS 79 + + P + + G ++ + E+ + +D +++ L SPGG Sbjct: 90 AKRGEEKSARPCLYVLDFNGSMDAGEVSSLREEVSAVLAVARPEDE---VLLRLESPGGV 146 Query: 80 AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + +Q+++ R +T V ++AAS GY+++C ++ IVAA ++VGSIGV+ Q Sbjct: 147 VHGYGLAASQLQRIRQRGIRLTVAVDKVAASGGYMMACVADRIVAAPFAIVGSIGVVAQI 206 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P L + ++ + K + F E + + + ++ ++ F + VSE R Sbjct: 207 PNFNRLLKNKDIDVELHTAGQYKRTLTLFGENTDEGREKFRQELNETHLLFKQFVSEMR- 265 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P ++ G W G +AK +GL+D +G +++ + + ++ + Sbjct: 266 -PSLDIESVATGEHWFGTQAKDMGLVDAIGTSDDLL--IAEM----ENHEVLAVRYTRRK 318 Query: 259 WFCDLKNLSISSLLEDTI 276 D S S LE + Sbjct: 319 RLLDRLTGSTSDALERLM 336 >gi|157370899|ref|YP_001478888.1| putative periplasmic protease [Serratia proteamaculans 568] gi|157322663|gb|ABV41760.1| Peptidase S49 domain protein [Serratia proteamaculans 568] Length = 348 Score = 84.7 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 54/268 (20%), Positives = 115/268 (42%), Gaps = 14/268 (5%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER--ISRDDSATALIVSLSSPGGSAY 81 + + VE P + + +G ++ + L E I +++ L SPGG + Sbjct: 90 AKAGAVEATKPCLYVLDFKGSMDAHEVTSLREEISAVLAVATPQ-DEVLLRLESPGGVVH 148 Query: 82 AGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + +++ +T V ++AAS GY+++C ++ IVAA +++GSIGV+ Q P Sbjct: 149 GYGLASSQLARLRTGGIRLTVAVDKVAASGGYMMACVADRIVAAPFAIIGSIGVVAQIPN 208 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + ++ + K + F E + + ++ ++ ++ F + V + R P Sbjct: 209 FHRLLKKNDIDVELHTAGEFKRTLTLFGENTEQGREKFREDLNDTHELFKQFVHQQR--P 266 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +AK+ GLID +G +++ + + ++ + Sbjct: 267 SLDIDSVATGEHWFGTQAKEKGLIDAIGTSDDLL--IAEM----ENHEVVGVRYARRKRM 320 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S + ++ + Q + L Sbjct: 321 MDRFTGSAAESVDRLLLRWWQRGEKPLL 348 >gi|260576715|ref|ZP_05844701.1| peptidase S49 [Rhodobacter sp. SW2] gi|259021082|gb|EEW24392.1| peptidase S49 [Rhodobacter sp. SW2] Length = 458 Score = 84.7 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 49/208 (23%), Positives = 83/208 (39%), Gaps = 14/208 (6%) Query: 36 PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A I + G + + + ++ D + + + + S GG Sbjct: 83 DGIAVIEVSGVLVHRGAWIGQSSGQTSYEGIAAQLAAAVTDPAVRGIALEIDSFGGEVAG 142 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + AI+ + KPV V E A SAGY ++ + I+ T VGSIGV+ + + Sbjct: 143 VFDLADAIRAARTAKPVQAFVAEHAFSAGYALASQATSIILPRTGAVGSIGVVVMHADLS 202 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L GV++ + S K + +P++ + +Q +DS F + VS R Sbjct: 203 GQLADDGVTVTLIHSGAHKVDGNPYAPLPDPVRARIQGEIDSLRTLFAQTVSAGRGRRLT 262 Query: 203 KTLVLSDGRI-WTGAEAKKVGLIDVVGG 229 L+ + GAEA GL D V Sbjct: 263 AEAALATEAECYRGAEAVAAGLADEVSD 290 >gi|332978457|gb|EGK15170.1| protease SohB [Psychrobacter sp. 1501(2011)] Length = 332 Score = 84.7 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 106/267 (39%), Gaps = 12/267 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81 + V + G I+ S +E+ I ++ D +++ L S GG + Sbjct: 56 KGKSKQKEKRVFVLDFDGDIKASAVKYLREEISAIISTANKGDE---VVLRLESGGGMVH 112 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + ++K +T ++AAS GY+++C ++ I+AA ++VGSIGV+ Q P Sbjct: 113 GYGLAAAQLVRLKEAGLTLTVCVDKIAASGGYMMACVADKILAAPFAVVGSIGVVSQMPN 172 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 +L K + + + K + F E + + ++ ++ ++ F V+ R P Sbjct: 173 FNKWLKKHDIDYEMFTAGEYKRTVTMFGENDEEDRAKYKEELEQTHELFKHFVTTYR--P 230 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 +++G W G +A K+ L+D + + ++ + + Sbjct: 231 QLDLSKVANGDHWYGEDALKLNLVDELSTSDAYLLKQMEDYQAYALMSRQKPTFAEKLGL 290 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + ++S ++ L Sbjct: 291 ANAAHSAVSGMVNTATKSALTALSDKL 317 >gi|261492956|ref|ZP_05989500.1| putative inner membrane peptidase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495996|ref|ZP_05992408.1| putative inner membrane peptidase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308346|gb|EEY09637.1| putative inner membrane peptidase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311381|gb|EEY12540.1| putative inner membrane peptidase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 350 Score = 84.7 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 105/254 (41%), Gaps = 13/254 (5%) Query: 40 RIAIRGQIEDSQ--ELIERIERISR--DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95 + G + + L I+ + + +++ L SPGG + +Q++++ Sbjct: 105 VLNFNGDMMAHEVNSLRREIDAVISLANPEKDEVLLKLESPGGVVHGYGLAASQLQRLRD 164 Query: 96 RK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 R + V ++AAS GY+++C +N IV+A +++GS+GV+ Q P + L K + + Sbjct: 165 RNIYLTAAVDKVAASGGYMMACVANKIVSAPFAVIGSVGVVAQVPNIHRLLKKHDIDVDV 224 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 + + K + E K Q Q ++ ++ F + V+ R P ++ G W Sbjct: 225 MTAGEYKRTVTLVGENTEKGKQKFQQELEETHSLFKQFVARRR--PQLDIEQVATGEHWF 282 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLED 274 G +A ++ L+D + +++ + +++ + + E+ Sbjct: 283 GQQAIELNLVDEIATSDDLLLNAIK------EKEVIELKYKEKKKLAQKLGSQFEQSAEN 336 Query: 275 TIPLMKQTKVQGLW 288 + + L Sbjct: 337 LLAKILHKSRSTLM 350 >gi|198283216|ref|YP_002219537.1| putative periplasmic protease [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666621|ref|YP_002425447.1| type IV pilin biogenesis peptidase, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247737|gb|ACH83330.1| Peptidase S49 domain protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518834|gb|ACK79420.1| type IV pilin biogenesis peptidase, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 334 Score = 84.7 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 95/231 (41%), Gaps = 12/231 (5%) Query: 38 VARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 + +G I S +E+ I+ +++ L S GG + Sbjct: 95 TYLLDFKGDIRASAVSALREEISAIIQAA---KPGDTVLLRLESGGGMVNTYGLASAQLL 151 Query: 92 KVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 +++ K + V +AAS GY+++ ++ IVA+ +L+GSIGV+ Q P +L + Sbjct: 152 RLRAAKIHLTVLVDAVAASGGYMMAVTADRIVASPFALIGSIGVVAQIPNFHRWLQDRNI 211 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 + + K + F E +++ ++ ++ F V + R P ++ G Sbjct: 212 DWEQFTAGKFKRTVTLFGENTETGRAKLREELEETHAQFRDFVQQYR--PQLDLEQVATG 269 Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 W G +A+++GL+D + +E+ G ++ + P+ Sbjct: 270 EAWLGNKARQLGLVDDLATSDEIILEAVRQGKVLALHYQRQKTLPQRLGLA 320 >gi|253989551|ref|YP_003040907.1| periplasmic protease [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781001|emb|CAQ84163.1| putative Peptidase S49 [Photorhabdus asymbiotica] Length = 348 Score = 84.7 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 50/213 (23%), Positives = 100/213 (46%), Gaps = 6/213 (2%) Query: 26 SWSSHVEDNSPHVARIAIRGQIE--DSQELIERIERISRDDSATA-LIVSLSSPGGSAYA 82 + + P + + +G I+ + L E I I A +++ L SPGG + Sbjct: 90 AKAGQKGLQKPCLYVLDFKGSIDAHEVDSLREEISAILAVADAKDEVLLRLESPGGMVHG 149 Query: 83 GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + +++ + +T V ++AAS GY+++C ++ I+AA +++GSIGV+ Q P + Sbjct: 150 YGLAASQLARLRQKGIRLTVAVDKVAASGGYMMACVADRIIAAPFAIIGSIGVVAQIPNI 209 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + ++ + K + E + + Q+ ++ ++ F + R P Sbjct: 210 HKLLKKNDIDVELHTAGEYKRTLTFLGENTEQGRKKFQEDLNQTHQLFKEFIHIHR--PL 267 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 ++ G W G +AK+ GLID VG +++ Sbjct: 268 LDVENVATGEYWYGTQAKEKGLIDEVGVSDDLL 300 >gi|312961376|ref|ZP_07775881.1| peptidase S49 [Pseudomonas fluorescens WH6] gi|311285034|gb|EFQ63610.1| peptidase S49 [Pseudomonas fluorescens WH6] Length = 342 Score = 84.7 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 51/254 (20%), Positives = 103/254 (40%), Gaps = 12/254 (4%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAG 83 D P V + G I+ S + L I + + +++ L S GG ++ Sbjct: 84 SKKKQPDAKPRVFVLDFDGDIKASATESLRHEITALLSLATPKDEVVLRLESGGGMVHSY 143 Query: 84 EAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + +++ +T ++AAS GY+++C I++A +++GSIGV+ Q P V Sbjct: 144 GLASSQLARIRQAGVPLTVCIDKVAASGGYMMACIGEKIISAPFAILGSIGVVAQLPNVN 203 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L K + + + + K + F E K + Q+ +D ++ F VS R P Sbjct: 204 RLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLDITHQLFKNFVSRYR--PQL 261 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 ++ G +W G A L+D + +E + ++ + + + Sbjct: 262 AIDEVATGEVWLGVAALDKQLVDELQTSDEYLATKAKTA------EVFHLHYAERKSLQE 315 Query: 263 LKNLSISSLLEDTI 276 L+ S ++ + Sbjct: 316 RVGLAASGSVDRVL 329 >gi|307130981|ref|YP_003882997.1| putative inner membrane peptidase [Dickeya dadantii 3937] gi|306528510|gb|ADM98440.1| predicted inner membrane peptidase [Dickeya dadantii 3937] Length = 348 Score = 84.7 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 106/249 (42%), Gaps = 16/249 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGS 79 + + P + + G ++ + E+ + +D +++ L SPGG Sbjct: 90 AKRGEDKSARPCLYVLDFNGSMDAGEVSSLREEVSAVLAVARPEDE---VLLRLESPGGV 146 Query: 80 AYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + +Q+ + R +T V ++AAS GY+++C ++ IVAA ++VGSIGV+ Q Sbjct: 147 VHGYGLAASQLQRFRQRGIRLTVAVDKVAASGGYMMACVADRIVAAPFAIVGSIGVVAQI 206 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P L + ++ + K + F E + + ++ ++ ++ F + VSE R Sbjct: 207 PNFNRLLKSKDIDVELHTAGQYKRTLTLFGENTEEGREKFREELNETHLLFKQFVSEMR- 265 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P ++ G W G +AK +GL+D +G +++ + + + K Sbjct: 266 -PSLDIESVATGEHWFGTQAKAMGLVDAIGTSDDLLIAEMENHEVLA----VRYTRRKRL 320 Query: 259 WFCDLKNLS 267 + Sbjct: 321 LDRLTGSTG 329 >gi|330960941|gb|EGH61201.1| putative inner membrane peptidase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 336 Score = 84.7 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 104/264 (39%), Gaps = 28/264 (10%) Query: 34 NSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 + V + G I+ S + I + ++ D +++ L S GG ++ Sbjct: 89 SKSRVYVLDFDGDIKASATESMRHEITALLTLATDKD--EVVLRLESGGGMVHSYGLASS 146 Query: 89 AIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + +++ +T ++AAS GY+++C N I++A +++GSIGV+ Q P V L K Sbjct: 147 QLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQLPNVNRLLKK 206 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 + + + + K + F E K + Q +D ++ F V+ R P + Sbjct: 207 HDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHELFKNFVASYR--PQLSIDEV 264 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G +W G A L+D + +E + ++ Sbjct: 265 ATGEVWLGMAAIDKLLVDELKTSDEYLAERAKEADVFHLHYVQR---------------- 308 Query: 268 ISSLLEDTIPLMKQTKVQGLWAVW 291 L++ + + T V + + W Sbjct: 309 --KSLQERMGMAAATSVDQVASKW 330 >gi|160431862|ref|YP_001551976.1| putative peptidase [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|260752171|ref|YP_003237686.1| signal peptide peptidase [Escherichia coli O111:H- str. 11128] gi|159885403|dbj|BAF93007.1| putative peptidase [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|257767641|dbj|BAI39135.1| signal peptide peptidase [Escherichia coli O111:H- str. 11128] Length = 393 Score = 84.7 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 60/367 (16%), Positives = 111/367 (30%), Gaps = 80/367 (21%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNS------PHVARIAIRGQIEDSQE----- 52 + + T V++SL+ L S + + H+A + I G++ E Sbjct: 27 MFRIHTTSKVVISLLALAAAGVSAFNIYDKYQESEGRMDHIAVVRISGEMGTGSEVGDGS 86 Query: 53 -LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI----------- 100 + + + + A A+I+ S GG I+R I +++ + I Sbjct: 87 VIATALAKAYNNPHAKAVIIEAESGGGGPSDAIIIYRQINALRSHQQKIERVSHAESTSK 146 Query: 101 --------------TEVHEMAASAGYLISCASNIIVAAET------------SLVGSIGV 134 E++ + A + ++ + S Sbjct: 147 PRNTSDHSASRSQADSNAELSKRNTLDVLSAGSGHFISDMENSYKPIIVSVKGICASACY 206 Query: 135 LFQYPYVKPFLD---------------KLGVSIKSV-------KSSPMKAEPSPFSEVNP 172 P F D L + +V + K P+ ++ Sbjct: 207 YAVSPADAIFADSSALTGSIGVRMDHWNLSRVMDTVGVKNEPLTAGEFKDALDPYHPLSD 266 Query: 173 KAVQMMQDVV-DSSYHWFVRLVSESRNIPY-----DKTLVLSDGRIWTGAEAKKVGLIDV 226 MQ + D+ + F+ V + R + L GR+WT +A + GLID Sbjct: 267 ATRDFMQKQILDAMHEQFIADVEQGRGKKLLSRPEADAVALYSGRVWTTQQAIRYGLIDG 326 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 EV L + S K +N P+ L L S +T+ + Sbjct: 327 DLTPVEVRSRLSQM---YSTTIFKTYNEPQRSLRSALGMLMSLSTNVETLAGTTSRILDS 383 Query: 287 LWAVWNP 293 + A P Sbjct: 384 VQATSYP 390 >gi|145570793|gb|ABP79899.1| probable protease [Pseudomonas stutzeri A1501] Length = 360 Score = 84.7 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 52/271 (19%), Positives = 109/271 (40%), Gaps = 19/271 (7%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGS 79 + + + S V + G I S E+ + + D +++ L S GG Sbjct: 100 AKQTKKSETSARVFVLDFDGDIRASAVENLRHEITALLTMATPQDE---VVLRLESGGGM 156 Query: 80 AYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + + ++++ +T ++AAS GY+++C N I+ A +++GSIGV+ Q Sbjct: 157 VHGYGLAASQLVRIRDAGVPLTVCVDKVAASGGYMMACIGNRILTAPFAILGSIGVVAQL 216 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P V L K V + + + K + F E K + Q+ +++++ F V+ R Sbjct: 217 PNVHRLLKKHDVDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLETTHELFKNFVARYRQ 276 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ G +W G A L D + ++ + I+ + P+ + Sbjct: 277 NL--SIDDVATGEVWLGIAALGKHLADELKTSDQYLAERAQEAELFQLHYIQKKSLPERF 334 Query: 259 WFCDLKNLSISSLLE-DTIPLMKQTKVQGLW 288 ++ S+++E + + Q W Sbjct: 335 ------GMAASTIMEHGLLKGWSRLNEQRFW 359 >gi|237731714|ref|ZP_04562195.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226907253|gb|EEH93171.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 351 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 110/267 (41%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYA 82 + P V + +G ++ + + + ++ ++V L SPGG + Sbjct: 95 GDSTSSDKPRVWVLDFKGSMDAHE--VSALREEVTAVLAVVKPQDQVVVRLESPGGVVHG 152 Query: 83 GEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +Q++++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 YGLAASQLQRLRDKQIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQIPNF 212 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 FL + I+ + K + E + Q ++ ++ ++H F V R P Sbjct: 213 NRFLKGKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKDFV--HRMRPT 270 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +A GL+D + +EV R++ + + Sbjct: 271 LDIEQVATGEHWLGQQALANGLVDEINTSDEVI------LGLMEGREVLNVRYLQRKKLM 324 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S + + + Q + L Sbjct: 325 DRFTGSAAESADRLLMRWWQRGQKPLM 351 >gi|54309644|ref|YP_130664.1| putative periplasmic protease [Photobacterium profundum SS9] gi|46914082|emb|CAG20862.1| putative sohB protein, peptidase U7 family [Photobacterium profundum SS9] Length = 353 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 97/240 (40%), Gaps = 14/240 (5%) Query: 40 RIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 I G I+ + E+ I D +++ L + GG + + ++ Sbjct: 109 VIDFHGSIDAREVSSLREEVSAIIAVAIEGDE---VLLRLETGGGMVHGYGLASSQLDRL 165 Query: 94 KNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 K+ V ++AAS GY+++C ++ I++A ++VGSIGV+ Q P L K + Sbjct: 166 KSAGIKLTISVDKVAASGGYMMACVADKIISAPFAIVGSIGVIAQLPNFSKVLKKHDIEF 225 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 + + + K + F E KA Q ++ ++ F ++ R P ++ G Sbjct: 226 EQITAGEFKRTLTMFGENTDKARDKFQVEIEETHGLFKDFIAIHR--PELDLEKVATGEH 283 Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 W G +A +GL+D +G ++ ++R + + +LL Sbjct: 284 WFGNQALNLGLVDEIGTSDDFITHACKDREVLNVRFV--QRKKLAEKLAGATGEAADNLL 341 >gi|283786268|ref|YP_003366133.1| hypothetical protein ROD_25981 [Citrobacter rodentium ICC168] gi|282949722|emb|CBG89341.1| hypothetical prophage protein [Citrobacter rodentium ICC168] Length = 288 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 48/218 (22%), Positives = 87/218 (39%), Gaps = 14/218 (6%) Query: 38 VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 +A I I+G + + + D T + + + SPGG Sbjct: 71 IAVIPIQGTLVQKLGCLRPYSGMTGYDGIRQTFLTAMADPEITGICLDIDSPGGEVAGCF 130 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + I + KP+ + E A SA Y I+ A++ I T VGS+GV+ + Sbjct: 131 DLVDEIYSARGDKPIHAILSESAYSAAYAIASAADRICVPRTGGVGSVGVVTMHLDWSQR 190 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + G+ + + KAE SP+ E++ +A +Q +++ FV V+ +R I Sbjct: 191 IMDDGLKVTIITFGSRKAEGSPYKELSDEAFTAIQQDINAMGELFVNTVARNRGISAKVI 250 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 G + ++GL D V + ++ L +L Sbjct: 251 KNTQAACFMAG-DGVELGLADEVITPDAAFRKLLSLTG 287 >gi|258621801|ref|ZP_05716832.1| sohB protein, peptidase U7 family [Vibrio mimicus VM573] gi|258586032|gb|EEW10750.1| sohB protein, peptidase U7 family [Vibrio mimicus VM573] Length = 356 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 49/267 (18%), Positives = 106/267 (39%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 PH+ + G I +E + I +++ +++ L + GG + Sbjct: 100 GELESKREPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 157 Query: 83 GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 158 YGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 217 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + + + + K + F E KA + + ++ ++ F + + R P Sbjct: 218 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKLELEETHQLFKDFIRDHR--PT 275 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +AK +GL+D + +++ + + + Sbjct: 276 LDLDKVATGEHWFGTQAKTLGLVDEIQTSDDLIVEACK------NKTVLLLRYVQKKKLA 329 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D ++ + + + L Sbjct: 330 DKLAGVAGDAADNVLMKLISRGQRPLV 356 >gi|311279820|ref|YP_003942051.1| Peptidase S49 domain-containing protein [Enterobacter cloacae SCF1] gi|308749015|gb|ADO48767.1| Peptidase S49 domain protein [Enterobacter cloacae SCF1] Length = 347 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 105/243 (43%), Gaps = 14/243 (5%) Query: 34 NSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYAGEAIFR 88 + V + +G ++ + + + ++ +++ L SPGG + Sbjct: 97 DKSRVWVLDFKGSMDAHE--VNALREEVTAVLAVVKPQDQVVLRLESPGGVVHGYGLAAS 154 Query: 89 AIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 +Q++++++ V ++AAS GY+++C N IV A +++GSIGV+ Q P FL Sbjct: 155 QLQRLRDKQVPLTIAVDKVAASGGYMMACVGNKIVCAPFAIIGSIGVVAQIPNFNRFLKG 214 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 + I+ + K + E + Q ++ ++ ++H F V R P + Sbjct: 215 KDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKDFVHSMR--PQLDIEQV 272 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G W G++AK+ GL+D +G +++ L + + K + + Sbjct: 273 ATGEHWYGSQAKEKGLVDDIGTSDDLLLGLMKDHEVLN----VRYLQRKKLLDRVTGSAA 328 Query: 268 ISS 270 S+ Sbjct: 329 ESA 331 >gi|33151994|ref|NP_873347.1| putative periplasmic protease [Haemophilus ducreyi 35000HP] gi|33148216|gb|AAP95736.1| putative secreted protease [Haemophilus ducreyi 35000HP] Length = 351 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 98/213 (46%), Gaps = 9/213 (4%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127 +++ L SPGG + +Q++++ +T V ++AAS GY+++C +N IVAA + Sbjct: 139 VLLQLESPGGVVHGYGLAASQLQRLRDHHIPLTVAVDKVAASGGYMMACVANKIVAAPFA 198 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 ++GS+GV+ Q P + FL K + + + + K + E K Q Q ++ ++ Sbjct: 199 ILGSVGVVAQVPNIHRFLKKHEIDVDVMTAGEYKRTVTLAGENTEKGKQKFQQELEETHQ 258 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F + V+ +R P + ++ G W G +A + LID + +++ + + Sbjct: 259 LFKQFVANNR--PQLEIEKVATGEHWFGQQALTLNLIDEIATSDDLILNAVK------DK 310 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 ++ + + LE+ I + Sbjct: 311 EVIKLAFKQKKKLAQRLGSQMEQSLENLIAKLL 343 >gi|91228570|ref|ZP_01262490.1| sohB protein, peptidase U7 family protein [Vibrio alginolyticus 12G01] gi|91187894|gb|EAS74206.1| sohB protein, peptidase U7 family protein [Vibrio alginolyticus 12G01] Length = 336 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 101/231 (43%), Gaps = 12/231 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 S PH+ + G I+ +E+ + D +++ L S GG + Sbjct: 97 GSLDSKREPHLFVLDFNGSIDAKEVASLREEITAILAVAREGDE---VLLRLESGGGMVH 153 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 154 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPN 213 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E KA + ++ ++ F + E R P Sbjct: 214 FNKLLKKHDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHVLFKDFIRERR--P 271 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 ++ G W G +AK++GL+D + +++ + S+ ++ Sbjct: 272 SLDLDKVATGEHWFGTQAKELGLVDDISTSDDIVVAACKDKTVLSVHYVQK 322 >gi|237721549|ref|ZP_04552030.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229449345|gb|EEO55136.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 288 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 80/228 (35%), Gaps = 6/228 (2%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + VA I + G + + +++ IS + ++ ++ PGG + Sbjct: 63 DDDTLPADSVAVIILEGTLYSWETYRLEKQLRDISDNPKICGAVLWINGPGGMVAHVDLA 122 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF--QYPYVKPF 144 + I + + KP+ T V SA + + A+ A + + + F Sbjct: 123 AKMIAE--SSKPIATYVAGTMGSAHFWLGTAAGRTFIASPMCEVGSVGIMLTYQSFKEYF 180 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + + S + ++ + + F +S + I YD Sbjct: 181 RKQGIDYREIYPDSADLKNYETRVIEKENNEEPIKQRLAVMHRIFCDAISRNLGIAYDPE 240 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 L L G+I+TG A G ID G E+ + + A + + ++ + Sbjct: 241 LPLFRGQIFTGDVAVANGYIDQFGTLEDAVKWVLAQATVRKVNEMYNI 288 >gi|70731028|ref|YP_260769.1| putative periplasmic protease [Pseudomonas fluorescens Pf-5] gi|68345327|gb|AAY92933.1| peptidase, U7 family [Pseudomonas fluorescens Pf-5] Length = 344 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 104/256 (40%), Gaps = 18/256 (7%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAY 81 + P V + G I+ S E+ + + D +++ L S GG + Sbjct: 87 KKQPAEAKPRVFVLDFNGDIKASATEGLRHEITALLSLATPKDE---VVLRLESGGGMVH 143 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + + +++ +T ++AAS GY+++C I++A +++GSIGV+ Q P Sbjct: 144 SYGLASSQLARIRQAGVPLTVCIDKVAASGGYMMACIGEKIISAPFAILGSIGVVAQLPN 203 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 V L K + + + + K + F E K + Q+ +D ++ F VS R P Sbjct: 204 VNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLDVTHQLFKNFVSRYR--P 261 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G +W G A++ L+D + +E ++ + + Sbjct: 262 QLAIDEVATGEVWLGVAAQEKLLVDELQTSDEYLADKAKSA------EVFHLHYAERKSL 315 Query: 261 CDLKNLSISSLLEDTI 276 + L+ S ++ + Sbjct: 316 QERVGLAASGSIDRVL 331 >gi|307942416|ref|ZP_07657767.1| minor capsid protein C [Roseibium sp. TrichSKD4] gi|307774702|gb|EFO33912.1| minor capsid protein C [Roseibium sp. TrichSKD4] Length = 281 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 92/220 (41%), Gaps = 17/220 (7%) Query: 36 PHVARIAIRGQ------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 VA I++ G I + D A+ + +SSPGG Sbjct: 59 DGVAVISVYGFLVSDLPFHGASWITGYNGIRLAFLAALSDPDIRAIALDVSSPGGMVSGC 118 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + I++ + KP++ V +++ASA + IS A+ +I T VGSIGV+ + Sbjct: 119 FELVEFIRQARGEKPIMAIVRDLSASAAFAISSAAEVITVPNTGSVGSIGVVRMHGDFSK 178 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP--- 200 +G+ + + S K + +P+ E+ + Q VD+ F V+ R I Sbjct: 179 MFSDVGLKVTLIHSGARKVDGNPYQELPDTVRESWQASVDAVRDLFADHVAAGRGIDRQT 238 Query: 201 -YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + L DG + A+++GLID + ++ + SL Sbjct: 239 VLETEAELYDGPLNLAR-AREIGLIDQIMSPDKAFASLIE 277 >gi|258626255|ref|ZP_05721102.1| sohB protein, peptidase U7 family [Vibrio mimicus VM603] gi|258581307|gb|EEW06209.1| sohB protein, peptidase U7 family [Vibrio mimicus VM603] Length = 356 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 49/267 (18%), Positives = 106/267 (39%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 PH+ + G I +E + I +++ +++ L + GG + Sbjct: 100 GELESKREPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 157 Query: 83 GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 158 YGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 217 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + + + + K + F E KA + + ++ ++ F + + R P Sbjct: 218 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKLELEETHQLFKDFIRDHR--PA 275 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +AK +GL+D + +++ + + + Sbjct: 276 LDLDKVATGEHWFGTQAKTLGLVDEIQTSDDLIVEACK------NKTVLLLRYVQKKKLA 329 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D ++ + + + L Sbjct: 330 DKLAGVAGDAADNVLMKLISRGQRPLV 356 >gi|66045696|ref|YP_235537.1| putative periplasmic protease [Pseudomonas syringae pv. syringae B728a] gi|63256403|gb|AAY37499.1| Peptidase S49 [Pseudomonas syringae pv. syringae B728a] gi|330971283|gb|EGH71349.1| putative inner membrane peptidase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 340 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 50/271 (18%), Positives = 102/271 (37%), Gaps = 15/271 (5%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGG 78 + V + G I+ S + I + ++ D +++ L S GG Sbjct: 79 ALKKEKKHAEPKARVYVLDFDGDIKASATESMRHEITALLTLATDKD--EVVLRLESGGG 136 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 ++ + +++ +T ++AAS GY+++C N I++A +++GSIGV+ Q Sbjct: 137 MVHSYGLASSQLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQ 196 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P V L K + + + + K + F E K + Q +D ++ F V+ R Sbjct: 197 LPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASYR 256 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 P ++ G +W G A L+D + +E + + + Sbjct: 257 --PQLSIDEVATGEVWLGMAAVDKLLVDELKTSDEYLAERARNADVFHLHYV-----QRK 309 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + + +S + + Q W Sbjct: 310 SLQERMGMAAATSADQLATKWWGRLTQQRFW 340 >gi|332768316|gb|EGJ98501.1| peptidase S49 family protein [Shigella flexneri 2930-71] Length = 467 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 86/217 (39%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + S GG A Sbjct: 42 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADTQVRGVLLDIDSSGGQATG 101 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 102 AFDCADMIYRLRQLKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMGHVSYA 161 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + + K + + F + K Q MQ +D++ F V+ + D Sbjct: 162 GHLAQAGVDITLIYAGSHKVDGNQFESLPAKVRQDMQQRIDAARRMFAEKVAMYTGLSVD 221 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + + ++ G + L D + + + A Sbjct: 222 AVMGT-EAAVFEGQSGIEAELADELINASDAISVMAA 257 >gi|268589496|ref|ZP_06123717.1| peptidase, S49 family [Providencia rettgeri DSM 1131] gi|291315164|gb|EFE55617.1| peptidase, S49 family [Providencia rettgeri DSM 1131] Length = 348 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 113/265 (42%), Gaps = 14/265 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQELIERIERISR----DDSATALIVSLSSPGGSAYAGE 84 P + + +G D++E+ E IS D +++ L SPGG + Sbjct: 93 GQTGVKKPCLYVLDFKGS-MDAREVASLREEISAILAVADQQDEVLLRLESPGGMVHGYG 151 Query: 85 AIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + ++K + V ++AAS GY+++C ++ I+AA +++GSIGV+ Q P + Sbjct: 152 LAASQLLRIKEKNIPLTIAVDKVAASGGYMMACIADKIIAAPFAIIGSIGVVAQIPNIHR 211 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K V ++ + K + E + + + ++S++ F + V ++R P Sbjct: 212 LLKKHDVDVELHTAGEYKRTLTMLGENTEQGRKKFVEDLNSTHELFKQFVHQNR--PSLD 269 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G++A GL+D +G ++ + ++I + D Sbjct: 270 ISAVATGEYWYGSQALDKGLVDNIGVSDDFIINAI------DTKEIVSIRYVLSKKMMDK 323 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + +++ + Q + L Sbjct: 324 FMGSAAKSVDNLLLRWWQRGQKPLL 348 >gi|90408618|ref|ZP_01216772.1| possible protease SohB [Psychromonas sp. CNPT3] gi|90310262|gb|EAS38393.1| possible protease SohB [Psychromonas sp. CNPT3] Length = 349 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 113/267 (42%), Gaps = 12/267 (4%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSATA-LIVSLSSPGGSAYA 82 + E + I +G I+ + L E I I SA + V L S GG + Sbjct: 90 AKKGDFEAPEAQLYVIDFKGSIDAKEVSSLREEISAILSVASAQDEVFVRLESGGGMVHG 149 Query: 83 GEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +Q++ N + V ++AAS GY+++C ++ I+AA +++GSIGV+ Q P Sbjct: 150 YGLAASQLQRLKDNNISLTISVDKVAASGGYMMACIADKIIAAPFAILGSIGVIAQIPNF 209 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + + + + K + F E + + + ++ F + VS+ R P Sbjct: 210 NKLLKKHDIEFEQLTAGQYKRTLTMFGENDDLGRDKFKQELQETHDLFKQFVSQHR--PN 267 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +A ++ LID + ++ L + + +IK K Sbjct: 268 LDMEKIATGEHWYGLQAIELDLIDKIQTSDD---YLMQQLGKRHVVQIKYSKHKK---LT 321 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 + + S LE+++ + Q ++ Sbjct: 322 EKFGHAASLALENSLLKLMQVNLKNFI 348 >gi|28869915|ref|NP_792534.1| peptidase, U7 family [Pseudomonas syringae pv. tomato str. DC3000] gi|28853160|gb|AAO56229.1| peptidase, U7 family [Pseudomonas syringae pv. tomato str. DC3000] gi|331014356|gb|EGH94412.1| putative inner membrane peptidase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 340 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 50/262 (19%), Positives = 102/262 (38%), Gaps = 15/262 (5%) Query: 33 DNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + V + G I+ S + I + ++ D +++ L S GG ++ Sbjct: 88 EPKARVYVLDFDGDIKASATESMRHEITALLTLATDKD--EVVLRLESGGGMVHSYGLAS 145 Query: 88 RAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 + +++ +T ++AAS GY+++C N I++A +++GSIGV+ Q P V L Sbjct: 146 SQLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQLPNVNRLLK 205 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 K + + + + K + F E K + Q +D ++ F V+ R P Sbjct: 206 KHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASYR--PQLSIDE 263 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 ++ G +W G A L+D + +E + + + + Sbjct: 264 VATGEVWLGMAAVDKLLVDELKTSDEYLAERARQADVFHLHYV-----QRKSLQERMGMA 318 Query: 267 SISSLLEDTIPLMKQTKVQGLW 288 + +S + + Q W Sbjct: 319 AANSADQLATKWWGRLTQQRFW 340 >gi|299530356|ref|ZP_07043781.1| phage minor capsid protein C, putative [Comamonas testosteroni S44] gi|298721727|gb|EFI62659.1| phage minor capsid protein C, putative [Comamonas testosteroni S44] Length = 314 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 46/215 (21%), Positives = 100/215 (46%), Gaps = 14/215 (6%) Query: 38 VARIAIRG-------------QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 V + I G + + + +++ DD+ + + + SPGGSA Sbjct: 74 VYVLPIHGALVSRSAHMDMCTTMTSYEGIRTQLQAALADDAVEHVALDVDSPGGSATGMT 133 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + I ++ KP+ V+ SA Y ++ A+N IV +++S VGSIGV+ ++ + Sbjct: 134 DLAEEIFAARSIKPITAIVNFSCYSAAYGLASAANEIVLSKSSGVGSIGVIARHVDMSKR 193 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 ++ G+ + ++ + KA+ + + ++ +A Q + ++V +Y F LV+ +R + Sbjct: 194 YEEQGIKVTTIFAGARKADLASDAPLSTEAAQWLNELVQQNYAEFTELVARNRGLTVAAV 253 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 G ++ G + ++GL D + + + A Sbjct: 254 RGTEAG-VYFGGKGIELGLADRIEPPQAAINRIAA 287 >gi|333021224|gb|EGK40478.1| head-tail preconnector protein GP5 [Shigella flexneri K-304] Length = 467 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 86/217 (39%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + S GG A Sbjct: 42 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADTQVRGVLLDIDSSGGQATG 101 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 102 AFDCADMIYRLRQLKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMGHVSYA 161 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + + K + + F + K Q MQ +D++ F V+ + D Sbjct: 162 GHLAQAGVDITLIYAGSHKVDGNQFESLPAKVRQDMQQRIDAARRMFAEKVAMYTGLSVD 221 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + + ++ G + L D + + + A Sbjct: 222 AVMGT-EAAVFEGQSGIEAELADELINASDAISVMAA 257 >gi|323174539|gb|EFZ60162.1| head-tail preconnector protein GP5 [Escherichia coli LT-68] Length = 402 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 84/193 (43%), Gaps = 1/193 (0%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 + ++ +++ D +++ + SPGG A I +++ KPV ++ Sbjct: 1 MTGYDGIVACLQQAMADTQVRGVLLDIDSPGGQATGAFDCADMIYRLRQLKPVWALCNDT 60 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 A SA L++ A + + +TS +GSIGV+ + L + GV I + + K + + Sbjct: 61 ACSAAMLLASACSRRLVTQTSRIGSIGVMMGHVSYAGHLAQAGVDITLIYAGSHKVDGNQ 120 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 F + K Q MQ +D++ F V+ + D + ++ ++ G + GL D Sbjct: 121 FESLPAKVRQDMQQRIDAARRMFAEKVAMYTGLSVDAVMG-TEAAVFEGQSGIEAGLADE 179 Query: 227 VGGQEEVWQSLYA 239 + + + A Sbjct: 180 LINASDAISVMAA 192 >gi|167574265|ref|ZP_02367139.1| phage minor capsid protein C, putative [Burkholderia oklahomensis C6786] Length = 322 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 89/194 (45%), Gaps = 1/194 (0%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 + + L + + D + +++ + S GGSA + I+ KP+ V+ Sbjct: 99 PMTSYEGLRTSVNQAVADPAVEHIVLDIDSNGGSATGAFELADDIRAASLVKPITAIVNF 158 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 A S GYLI+ A++ ++ + TS +GSIGV+ + V ++ G+ + SV + K + + Sbjct: 159 SAFSGGYLIAAAASNVIVSRTSGIGSIGVIANHLDVSKRDEQQGIKVTSVFAGDHKNDLT 218 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P ++ +++ + +V +SY FV ++ R + G I+ G + GL D Sbjct: 219 PHEPLSDQSLTFLTSMVQNSYKQFVDAIANFRGLSTQAVKDTQAG-IFFGQKGVDAGLAD 277 Query: 226 VVGGQEEVWQSLYA 239 V + + A Sbjct: 278 SVETPQAAINRIAA 291 >gi|262171927|ref|ZP_06039605.1| SohB protein peptidase U7 family [Vibrio mimicus MB-451] gi|261893003|gb|EEY38989.1| SohB protein peptidase U7 family [Vibrio mimicus MB-451] Length = 353 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 49/267 (18%), Positives = 106/267 (39%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 PH+ + G I +E + I +++ +++ L + GG + Sbjct: 97 GELESKREPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 154 Query: 83 GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 155 YGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 214 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + + + + K + F E KA + + ++ ++ F + + R P Sbjct: 215 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKLELEETHQLFKDFIRDHR--PA 272 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +AK +GL+D + +++ + + + Sbjct: 273 LDLDKVATGEHWFGTQAKTLGLVDEIQTSDDLIVEACK------NKTVLLLRYVQKKKLA 326 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D ++ + + + L Sbjct: 327 DKLAGVAGDAADNVLMKLISRGQRPLV 353 >gi|300716945|ref|YP_003741748.1| peptidase, family U7 [Erwinia billingiae Eb661] gi|299062781|emb|CAX59901.1| Peptidase, family U7 [Erwinia billingiae Eb661] Length = 349 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 116/265 (43%), Gaps = 16/265 (6%) Query: 30 HVEDNSPHVARIAIRG-----QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 E P + + +G ++ +E + + +++ +++ L SPGG + Sbjct: 95 KSESTKPTLYVLDFKGSMDAHEVSSLREEVSAVMAVAK--PQDEVLLRLESPGGVVHGYG 152 Query: 85 AIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+++++ +T V ++AAS GY+++C ++ IVAA S+VGSIGV+ Q P Sbjct: 153 LASSQLQRLRDKGIRLTVAVDKVAASGGYMMACVADRIVAAPFSIVGSIGVVAQIPNFNR 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L + + ++ + K + F E + + ++ ++ ++ F + V + R P Sbjct: 213 LLKRNEIDVELHTAGEYKRTLTLFGENTEQGREKFREDLNETHLLFKQFVHQMR--PSLD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +A + GL+D +G +++ + ++ + D Sbjct: 271 IDSVATGEHWFGTQALEKGLVDAIGTSDDLIID------QMANHEVISVRFTRRKKMIDR 324 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLW 288 S + E + + Q + L Sbjct: 325 FTQSAAGSAERLLLRLWQRGEKPLL 349 >gi|224583792|ref|YP_002637590.1| periplasmic protease [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468319|gb|ACN46149.1| putative protease [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 348 Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 16/250 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSAY 81 + P V I +G ++ + + + A++ L SPGG + Sbjct: 92 GDIATSDKPRVWVIDFKGSMDAHE--VNALREEVTAVLAVAKPGDRAVV-RLESPGGVVH 148 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +Q+++++ +T ++AAS GY+++C + I+AA ++VGSIGV+ Q P Sbjct: 149 GYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPN 208 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 FL + I+ + K + E + Q ++ ++ ++H F V R P Sbjct: 209 FNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMR--P 266 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +A + GL+D + +EV L + + K Sbjct: 267 ALDIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLMEGREVLN----VRYMQRKKLID 322 Query: 261 CDLKNLSISS 270 + + S+ Sbjct: 323 RVTGSAAESA 332 >gi|291085291|ref|ZP_06352653.2| SohB protein, peptidase U7 family [Citrobacter youngae ATCC 29220] gi|291071517|gb|EFE09626.1| SohB protein, peptidase U7 family [Citrobacter youngae ATCC 29220] Length = 351 Score = 83.9 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 113/265 (42%), Gaps = 19/265 (7%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYA 82 + P V + +G ++ + + + ++ ++V L SPGG + Sbjct: 95 GDSSSSDKPRVWVLDFKGSMDAHE--VSALREEVTAVLAVVKPQDQVVVRLESPGGVVHG 152 Query: 83 GEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +Q++++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 YGLAASQLQRLRDKQIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQIPNF 212 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 FL + I+ + K + E + Q ++ ++ ++H F V R P Sbjct: 213 NRFLKGKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKDFVQRMR--PA 270 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +A GL+D + +EV +L + + ++ K Sbjct: 271 LDIEQVATGEHWFGQQALANGLVDEINTSDEVILALME---GREVLSVRYIQRKK----- 322 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQG 286 L + S E L+ + +G Sbjct: 323 -LMDRFTGSAAESADRLLLRWWQRG 346 >gi|331233637|ref|XP_003329479.1| protease IV [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309308469|gb|EFP85060.1| protease IV [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 563 Score = 83.9 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 9/187 (4%) Query: 37 HVARIAIRGQIED-----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 +V + + G I D + +++ + + DDS A+++ + S GG + I+ A++ Sbjct: 120 NVGVVYVLGTIGDMGEFGTSAIVKGLHEAADDDSIGAVVLRIDSGGGGVVESDTIWGAVK 179 Query: 92 KVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY-VKPFLDKLG 149 +K + K VI AAS GYLI+ ++ I A+++++ GSIGV P FLD+L Sbjct: 180 ALKAKGKVVIASFGNAAASGGYLIATHADSIFASQSTITGSIGVASLRPTVTTSFLDRLK 239 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 ++ +S + E F V E RNI + VL+ Sbjct: 240 LTTQSFFTGSNALSLYHELEGEQMERHKAHIDSAYHD--FKERVCEGRNISPELIEVLAG 297 Query: 210 GRIWTGA 216 GR++TG Sbjct: 298 GRVYTGQ 304 >gi|270159903|ref|ZP_06188559.1| S49 family peptidase [Legionella longbeachae D-4968] gi|289165342|ref|YP_003455480.1| inner membrane peptidase [Legionella longbeachae NSW150] gi|269988242|gb|EEZ94497.1| S49 family peptidase [Legionella longbeachae D-4968] gi|288858515|emb|CBJ12396.1| putative inner membrane peptidase [Legionella longbeachae NSW150] Length = 312 Score = 83.9 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 11/251 (4%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSS 75 L H + P + I G I+ S ++L E I + + ++V L S Sbjct: 59 ILGKKIPKKKKHKNEEQPTLYVIDFHGDIKASQVEQLREEINALLCTATPRDEVLVRLDS 118 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 PGG + +Q++++R + +MAAS GYL++C +N ++AA +++GSIGV Sbjct: 119 PGGIVNSYGLAASQLQRIRDRNIPLTVSIDKMAASGGYLMACVANQVIAAPFAIIGSIGV 178 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + Q P +L K + ++ + + K + F E K + QD ++ + F V+ Sbjct: 179 VAQIPNFHRWLKKHDIDVELLTAGEYKRTLTLFGENTEKGREKAQDDLEKIHAAFRNYVA 238 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 +R +S G W +A + LID + ++ L S + K P Sbjct: 239 ANR--DQLDIDKVSTGEHWLAKDAFDLKLIDKLCTSDDYL-----LEKISSYKAFKLTVP 291 Query: 255 PKNYWFCDLKN 265 PK + L Sbjct: 292 PKTFLANKLLK 302 >gi|56413358|ref|YP_150433.1| periplasmic protease [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362282|ref|YP_002141919.1| periplasmic protease [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127615|gb|AAV77121.1| putative protease [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093759|emb|CAR59233.1| putative protease [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 348 Score = 83.9 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 16/250 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSAY 81 + P V I +G ++ + + + A++ L SPGG + Sbjct: 92 GDIATSDKPRVWVIDFKGSMDAHE--VNALREEVTAVLAVAKPGDRAVV-RLESPGGVVH 148 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +Q+++++ +T ++AAS GY+++C + I+AA ++VGSIGV+ Q P Sbjct: 149 GYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPN 208 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 FL + I+ + K + E + Q ++ ++ ++H F V R P Sbjct: 209 FNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMR--P 266 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +A + GL+D + +EV L + + K Sbjct: 267 ALDIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLMEGREVLN----VRYMQRKKLID 322 Query: 261 CDLKNLSISS 270 + + S+ Sbjct: 323 RVTGSAAESA 332 >gi|218549037|ref|YP_002382828.1| periplasmic protease [Escherichia fergusonii ATCC 35469] gi|218356578|emb|CAQ89201.1| putative inner membrane peptidase [Escherichia fergusonii ATCC 35469] Length = 349 Score = 83.9 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 109/267 (40%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYA 82 + + P V + +G ++ + + + ++ ++V L SPGG + Sbjct: 93 GETLSSDKPRVWVLDFKGSMDAHE--VTALREEITAVLAVYKPQDQVVVRLESPGGVVHG 150 Query: 83 GEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +Q++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 151 YGLAASQLQRLRDHNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQLPNF 210 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 211 NRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHLLFKDFVKRMR--PS 268 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +A + GL+D + ++V R++ + + Sbjct: 269 LDIDQVATGEHWYGQQALEKGLVDEINTSDDVI------LGLMDGREVVNVRYMQRKKLL 322 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S + + + Q + L Sbjct: 323 DRFTGSAAESADRLLLRWWQRGQKPLM 349 >gi|56460146|ref|YP_155427.1| putative periplasmic protease [Idiomarina loihiensis L2TR] gi|56179156|gb|AAV81878.1| Periplasmic serine protease, ClpP family [Idiomarina loihiensis L2TR] Length = 332 Score = 83.9 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 109/249 (43%), Gaps = 16/249 (6%) Query: 31 VEDNSPHVARIAIRGQIEDSQEL------IERIERISRDDSATALIVSLSSPGGSAYAGE 84 V++ + I +G D++E+ + I ++ + ++V L S GG Sbjct: 81 VQNKEKRLFVIDFKGS-MDAKEVDSLRHEVNAILNLATEKD--EVLVRLESGGGVVNGYG 137 Query: 85 AIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + +++ + + ++AAS GY+++C + ++AA + +GSIGV+ Q P Sbjct: 138 LAAAQLLRLREHNLTVNVAIDKVAASGGYMMACVGHKLMAAPFAFIGSIGVVAQIPNFHR 197 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K V + + + K + F E + + + +++ + F V E+R Sbjct: 198 LLKKHNVDFEQLTAGEYKRTLTIFGENTDEGRRKFKQDLEAIHRQFKSFVQENR--SELD 255 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD-WNPPKNYWFCD 262 ++ G +W+G EAK++GLID V + L + K++ P + F Sbjct: 256 IDKVATGEVWSGQEAKELGLIDEVITSD---AWLMKQHKGFDVLKLQYVIRKPLSERFAK 312 Query: 263 LKNLSISSL 271 ++ I +L Sbjct: 313 GMSVIIHTL 321 >gi|24112121|ref|NP_706631.1| head-tail preconnector gp5 [Shigella flexneri 2a str. 301] gi|30062238|ref|NP_836409.1| head-tail preconnector gp5 [Shigella flexneri 2a str. 2457T] gi|24050954|gb|AAN42338.1| head-tail preconnector gp5 [Shigella flexneri 2a str. 301] gi|30040483|gb|AAP16215.1| head-tail preconnector gp5 [Shigella flexneri 2a str. 2457T] gi|281600080|gb|ADA73064.1| Head-tail preconnector gp5 [Shigella flexneri 2002017] gi|313649543|gb|EFS13973.1| head-tail preconnector protein [Shigella flexneri 2a str. 2457T] gi|332761373|gb|EGJ91659.1| head-tail preconnector protein GP5 [Shigella flexneri 2747-71] gi|332763428|gb|EGJ93668.1| head-tail preconnector protein GP5 [Shigella flexneri K-671] Length = 501 Score = 83.9 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 86/217 (39%), Gaps = 14/217 (6%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + S GG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADTQVRGVLLDIDSSGGQATG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQLKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMGHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + GV I + + K + + F + K Q MQ +D++ F V+ + D Sbjct: 196 GHLAQAGVDITLIYAGSHKVDGNQFESLPAKVRQDMQQRIDAARRMFAEKVAMYTGLSVD 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + + ++ G + L D + + + A Sbjct: 256 AVMGT-EAAVFEGQSGIEAELADELINASDAISVMAA 291 >gi|16760164|ref|NP_455781.1| periplasmic protease [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765060|ref|NP_460675.1| periplasmic protease [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142065|ref|NP_805407.1| periplasmic protease [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62180283|ref|YP_216700.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613795|ref|YP_001587760.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549776|ref|ZP_02343534.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993770|ref|ZP_02574863.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230154|ref|ZP_02655212.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237768|ref|ZP_02662826.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168241294|ref|ZP_02666226.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168260063|ref|ZP_02682036.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168462810|ref|ZP_02696741.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819538|ref|ZP_02831538.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194449361|ref|YP_002045763.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469745|ref|ZP_03075729.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735219|ref|YP_002114748.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247759|ref|YP_002146310.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265745|ref|ZP_03165819.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198243766|ref|YP_002215425.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204927734|ref|ZP_03218935.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205352610|ref|YP_002226411.1| periplasmic protease [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|213582175|ref|ZP_03364001.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213647994|ref|ZP_03378047.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855228|ref|ZP_03383468.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238911892|ref|ZP_04655729.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|25512261|pir||AD0654 probable protease STY1334 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16420246|gb|AAL20634.1| putative peptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502458|emb|CAD08415.1| putative protease [Salmonella enterica subsp. enterica serovar Typhi] gi|29137694|gb|AAO69256.1| putative protease [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62127916|gb|AAX65619.1| putative peptidase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161363159|gb|ABX66927.1| hypothetical protein SPAB_01529 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194407665|gb|ACF67884.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456109|gb|EDX44948.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710721|gb|ACF89942.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195634032|gb|EDX52384.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197211462|gb|ACH48859.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197244000|gb|EDY26620.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289292|gb|EDY28659.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938282|gb|ACH75615.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204323076|gb|EDZ08272.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272391|emb|CAR37271.1| putative protease [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325030|gb|EDZ12869.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328266|gb|EDZ15030.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335298|gb|EDZ22062.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339594|gb|EDZ26358.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343732|gb|EDZ30496.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205351232|gb|EDZ37863.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261246906|emb|CBG24723.1| putative protease [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993661|gb|ACY88546.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158244|emb|CBW17743.1| putative protease [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912709|dbj|BAJ36683.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085785|emb|CBY95561.1| putative protease [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224347|gb|EFX49410.1| putative protease sohB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614975|gb|EFY11900.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621431|gb|EFY18285.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623227|gb|EFY20069.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628517|gb|EFY25305.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633681|gb|EFY30421.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638511|gb|EFY35206.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640819|gb|EFY37468.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645317|gb|EFY41845.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651800|gb|EFY48172.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654303|gb|EFY50625.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322662730|gb|EFY58937.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667659|gb|EFY63819.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671927|gb|EFY68048.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677027|gb|EFY73091.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680311|gb|EFY76350.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685260|gb|EFY81256.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322714757|gb|EFZ06328.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129988|gb|ADX17418.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195430|gb|EFZ80609.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199319|gb|EFZ84413.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204777|gb|EFZ89773.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205927|gb|EFZ90890.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323220715|gb|EGA05160.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225564|gb|EGA09792.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232116|gb|EGA16223.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234643|gb|EGA18730.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238095|gb|EGA22154.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243301|gb|EGA27320.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248442|gb|EGA32377.1| putative inner membrane peptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252548|gb|EGA36391.1| putative inner membrane peptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255427|gb|EGA39193.1| putative inner membrane peptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260829|gb|EGA44431.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267584|gb|EGA51067.1| putative inner membrane peptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270950|gb|EGA54386.1| putative inner membrane peptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326623172|gb|EGE29517.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627673|gb|EGE34016.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988605|gb|AEF07588.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 348 Score = 83.9 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 16/250 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSAY 81 + P V I +G ++ + + + A++ L SPGG + Sbjct: 92 GDIATSDKPRVWVIDFKGSMDAHE--VNALREEVTAVLAVAKPGDRAVV-RLESPGGVVH 148 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +Q+++++ +T ++AAS GY+++C + I+AA ++VGSIGV+ Q P Sbjct: 149 GYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPN 208 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 FL + I+ + K + E + Q ++ ++ ++H F V R P Sbjct: 209 FNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMR--P 266 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +A + GL+D + +EV L + + K Sbjct: 267 ALDIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLMEGREVLN----VRYMQRKKLID 322 Query: 261 CDLKNLSISS 270 + + S+ Sbjct: 323 RVTGSAAESA 332 >gi|152969822|ref|YP_001334931.1| putative periplasmic protease [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330002600|ref|ZP_08304369.1| putative signal peptide peptidase SppA [Klebsiella sp. MS 92-3] gi|150954671|gb|ABR76701.1| putative peptidase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328537251|gb|EGF63511.1| putative signal peptide peptidase SppA [Klebsiella sp. MS 92-3] Length = 360 Score = 83.9 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 105/250 (42%), Gaps = 16/250 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 + + P + +G ++ +E+ + D +++ L SPGG + Sbjct: 104 GNAEPEGKPRAWVLDFKGSMDAHEVNSLREEITAVLAAAKARDQ---VVIRLESPGGVVH 160 Query: 82 AGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +Q++++++ V ++AAS GY+++C +N IV+A +++GSIGV+ Q P Sbjct: 161 GYGLAASQLQRLRDKQIPLTVSVDKVAASGGYMMACVANKIVSAPFAILGSIGVVAQIPN 220 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + FL + I+ + K + E + + ++ ++ ++H F V R P Sbjct: 221 LHRFLKNKDIDIELHTAGQYKRTLTMLGENTEEGRRKFREDLNETHHLFKDFV--HRMRP 278 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +A + GL+D V +E+ L + K Sbjct: 279 GLDIEQVATGEHWYGVQALEKGLVDAVETSDELLLGLMESHEVIG----VRYQQRKKMLD 334 Query: 261 CDLKNLSISS 270 + S S+ Sbjct: 335 RFTGSASESA 344 >gi|150396862|ref|YP_001327329.1| peptidase S49 [Sinorhizobium medicae WSM419] gi|150028377|gb|ABR60494.1| peptidase S49 [Sinorhizobium medicae WSM419] Length = 301 Score = 83.9 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 89/213 (41%), Gaps = 14/213 (6%) Query: 38 VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 +A I I G + + + ++ D A++ + S GG Sbjct: 79 IALIEIEGSLVNKGKWIGKSCGMTSYEAIGVQVRDCIERDDIKAVVFEVDSYGGEVTGAF 138 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I ++ KP I + + A SAGYL++ +V +T + GSIGV+ + + + Sbjct: 139 DCAELIFELSQVKPTIAVLTDHACSAGYLLASPCRQLVIPQTGICGSIGVISMHVDMSAW 198 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K G+ + +K+ KA+ +P+ + +Q ++ F V+ R + Sbjct: 199 LAKEGLKVTILKAGEHKADFNPYEAIPDDVLQQELAELEELRVEFAATVARYRAGRLTQQ 258 Query: 205 LVL-SDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 L ++ R++ G +A GL D V +V ++ Sbjct: 259 SALATEARVYRGQKAVDAGLADAVARPSQVLEA 291 >gi|58698082|ref|ZP_00373006.1| hypothetical protein WwAna1566 [Wolbachia endosymbiont of Drosophila ananassae] gi|225630941|ref|YP_002727732.1| minor capsid protein C, putative [Wolbachia sp. wRi] gi|58535439|gb|EAL59514.1| hypothetical protein WwAna1566 [Wolbachia endosymbiont of Drosophila ananassae] gi|225592922|gb|ACN95941.1| minor capsid protein C, putative [Wolbachia sp. wRi] Length = 360 Score = 83.9 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 101/231 (43%), Gaps = 14/231 (6%) Query: 31 VEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPG 77 V ++ + I I G + +++ E IE D+ +I+ + SPG Sbjct: 35 VRNSERGIKVIPIHGILTKKSEAFDDVLGMTSYEKIREEIEEALIDEEVETIILDIDSPG 94 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G + + I + + K ++ ++ A SA Y I+ ++ ++ TS VGSIGV+ Sbjct: 95 GEVNSLFDLSDFIYEARGLKKIVAIANDDAYSAAYAIASSAEKVLVTRTSGVGSIGVIAS 154 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + F +K G+ +V + K + +P + ++++ +Q+ V Y FV LV+ +R Sbjct: 155 HIDQSGFDEKQGIKYTTVFAGSRKNDLNPHEPITSESLESLQEEVGRLYEMFVELVARNR 214 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 N+ + G + G +A ++GL D V E + + K Sbjct: 215 NLSTETIKSTEAGLYF-GEKAIEIGLADEVITYSEFIDRRNNMSKAEFNYK 264 >gi|332184305|gb|AEE26559.1| peptidase family S49 protein [Francisella cf. novicida 3523] Length = 338 Score = 83.9 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 101/251 (40%), Gaps = 12/251 (4%) Query: 29 SHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 + V I +G I E+ + + I + + +IV + SPGG Sbjct: 86 DKQDKPKQKVFVINFKGDIHASQVENLRNEVSAILAVVNTED--EVIVRIDSPGGVVNGY 143 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYVK 142 +++++ +T + A++G + A + I+AA ++VGSIGV+ P ++ Sbjct: 144 GFAAAQLERIRQAGINLTVCIDQVAASGGYMMSAVAHKIIAAPFAIVGSIGVVGTIPNIR 203 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L+K G++++ S K + + + ++S + F + + R P Sbjct: 204 ELLEKNGINVEMHTSGEYKRTLTTVGINTEEGRNKFKQDLESIHQLFKKHILVYR--PSL 261 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 ++ G W G +A ++GL+D + ++ L L + ++ + + Sbjct: 262 NINKVATGEYWFGKDALELGLVDKIQTYDDYLIDL--LNKHHDVYEVSYVIKKEKGFLRS 319 Query: 263 LKNLSISSLLE 273 ++ ++ Sbjct: 320 KLSMLKRTMTN 330 >gi|145300014|ref|YP_001142855.1| periplasmic protease [Aeromonas salmonicida subsp. salmonicida A449] gi|142852786|gb|ABO91107.1| probable protease sohB [Aeromonas salmonicida subsp. salmonicida A449] Length = 335 Score = 83.9 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 111/259 (42%), Gaps = 14/259 (5%) Query: 30 HVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA----TALIVSLSSPGGSAYAGEA 85 ED + + G D++E+ E +S +++ L S GG + Sbjct: 83 KTEDERSRLFVLDFNGS-MDAKEVASLREEVSAVIGVAQSGDEVLLRLESGGGVVHGYGL 141 Query: 86 IFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 +Q+++++ +T + ++AAS GY+++C ++ I+AA ++VGSIGV+ Q P Sbjct: 142 AASQLQRLRDKGIKLTVAIDKVAASGGYMMACVADQILAAPFAIVGSIGVIAQLPNFNKL 201 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K + + + K + F E + + ++ + + + F V+E R P+ Sbjct: 202 LKKHDIEFEMHTAGQYKRTITMFGENDDLGREKFREELGAIHERFKAFVAEHR--PHLDI 259 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 ++ G W ++AK +GL+D + ++ L + K+ + K Sbjct: 260 DSVTTGEHWLASQAKGLGLVDTLCTSDDY------LLAQANHHKVVGISYRKPKSLTQKL 313 Query: 265 NLSISSLLEDTIPLMKQTK 283 + LE ++ + Q Sbjct: 314 GQQAALALESSLGRLWQQS 332 >gi|303245382|ref|ZP_07331666.1| peptidase S49 [Desulfovibrio fructosovorans JJ] gi|302493231|gb|EFL53093.1| peptidase S49 [Desulfovibrio fructosovorans JJ] Length = 448 Score = 83.9 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 80/216 (37%), Gaps = 24/216 (11%) Query: 37 HVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +VA I + G I + L ++ D + ++++++ SPGG Sbjct: 63 NVAIIPVMGPIFPRASMFESISQAAVSVETLARDLQAALDDPAVASIVLNIDSPGGQVSG 122 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + + KPV+ + ASA Y I+ A++ I A ++VGSIG++ P Sbjct: 123 IHEFASQVFYAGSVKPVVAYIQGTGASAAYWIASATSRIFADAAAVVGSIGIVATIPKND 182 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 ++ +A + + +D + FV V+ R + Sbjct: 183 GK---------TLSIVSSRAPKKRVDPETEEGRAEVVRTLDDLHAVFVGDVAAFRGFTRE 233 Query: 203 KTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 + G + GA A G+ D +G E V L Sbjct: 234 EVEQNFGQGGVLVGARAVAAGMADALGSLEGVIAEL 269 >gi|261210784|ref|ZP_05925076.1| SohB protein peptidase U7 family [Vibrio sp. RC341] gi|260840269|gb|EEX66849.1| SohB protein peptidase U7 family [Vibrio sp. RC341] Length = 255 Score = 83.9 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 49/260 (18%), Positives = 106/260 (40%), Gaps = 16/260 (6%) Query: 35 SPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 PH+ + G I +E + I +++ +++ L + GG + Sbjct: 6 EPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHGYGLASSQ 63 Query: 90 IQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P L K Sbjct: 64 LDRIKEAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNFHKLLKKN 123 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 + + + + K + F E KA + ++ ++ F + + R P ++ Sbjct: 124 DIEFEQLTAGEYKRTLTMFGENTDKARDKFKLELEETHQLFKDFIRDHR--PALDLDKVA 181 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 G W G +A+ +GL+D + +++ + + + K D Sbjct: 182 TGEHWFGTQAQTLGLVDEIRTSDDLIVAACK----NKTVLLLRYTQKKK--LADKLAGVA 235 Query: 269 SSLLEDTIPLMKQTKVQGLW 288 ++ + + + L Sbjct: 236 GDAADNVLLKLISRGQRPLV 255 >gi|207856771|ref|YP_002243422.1| periplasmic protease [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206708574|emb|CAR32895.1| putative protease [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 348 Score = 83.9 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 16/250 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSAY 81 + P V I +G ++ + + + A++ L SPGG + Sbjct: 92 GDIATSDKPRVWVIDFKGSMDAHE--VNALREEVTAVLAVAKPGDRAVV-RLESPGGVVH 148 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +Q+++++ +T ++AAS GY+++C + I+AA ++VGSIGV+ Q P Sbjct: 149 GYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPN 208 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 FL + I+ + K + E + Q ++ ++ ++H F V R P Sbjct: 209 FNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMR--P 266 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +A + GL+D + +EV L + + K Sbjct: 267 ALDIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLMEGREVLN----VRYMQRKKLID 322 Query: 261 CDLKNLSISS 270 + + S+ Sbjct: 323 RVTGSAAESA 332 >gi|238756367|ref|ZP_04617679.1| Protein C serine peptidase MEROPS family S49 [Yersinia ruckeri ATCC 29473] gi|238705428|gb|EEP97833.1| Protein C serine peptidase MEROPS family S49 [Yersinia ruckeri ATCC 29473] Length = 280 Score = 83.9 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 91/220 (41%), Gaps = 14/220 (6%) Query: 38 VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 +A I I+G + + R D + + + + SPGG Sbjct: 62 IAIIPIQGTLVQKLGSLRPYSGMTGYDGIRACFLRALYDKTVKGICLDIDSPGGEVAGCF 121 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + I + +KP+ + E A SA Y ++ A++ IV T VGS+GV+ + Sbjct: 122 DLVDEIYASRGQKPIWAILSENAYSAAYALASAADRIVVPRTGGVGSVGVIVMHVDWSQR 181 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + G+ + + KAE +P++ ++ +A Q +Q VD FV V+ +R I Sbjct: 182 IKADGLQVTIITYGDRKAESNPYTPLSEEAQQSIQSDVDEMGRLFVSTVARNRGIAEKII 241 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 + A+ ++GL D V + +++L ++ Sbjct: 242 RDTQAACLL-AADGVQLGLADEVAAPDTAFRALLNQVGEE 280 >gi|229577462|ref|YP_001172741.2| putative periplasmic protease [Pseudomonas stutzeri A1501] Length = 340 Score = 83.9 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 52/271 (19%), Positives = 109/271 (40%), Gaps = 19/271 (7%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGS 79 + + + S V + G I S E+ + + D +++ L S GG Sbjct: 80 AKQTKKSETSARVFVLDFDGDIRASAVENLRHEITALLTMATPQDE---VVLRLESGGGM 136 Query: 80 AYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + + ++++ +T ++AAS GY+++C N I+ A +++GSIGV+ Q Sbjct: 137 VHGYGLAASQLVRIRDAGVPLTVCVDKVAASGGYMMACIGNRILTAPFAILGSIGVVAQL 196 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P V L K V + + + K + F E K + Q+ +++++ F V+ R Sbjct: 197 PNVHRLLKKHDVDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLETTHELFKNFVARYRQ 256 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ G +W G A L D + ++ + I+ + P+ + Sbjct: 257 NL--SIDDVATGEVWLGIAALGKHLADELKTSDQYLAERAQEAELFQLHYIQKKSLPERF 314 Query: 259 WFCDLKNLSISSLLE-DTIPLMKQTKVQGLW 288 ++ S+++E + + Q W Sbjct: 315 ------GMAASTIMEHGLLKGWSRLNEQRFW 339 >gi|330815838|ref|YP_004359543.1| peptidase S49 [Burkholderia gladioli BSR3] gi|327368231|gb|AEA59587.1| peptidase S49 [Burkholderia gladioli BSR3] Length = 353 Score = 83.9 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 53/233 (22%), Positives = 100/233 (42%), Gaps = 16/233 (6%) Query: 21 TVVYFSWSSHVEDNSPHVARIAIRGQI---------------EDSQELIERIERISRDDS 65 V ++ + ++A + G + ++ + + + D S Sbjct: 49 AAVAARRANTGRNVGGNIAVLCFYGSVLQRKSPADDVSGSGFMSLEQFMSQFRAMMADSS 108 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 + +++ + SPGG Y I+ + +KPV + +AASA Y I+ +++ Sbjct: 109 VSGILIDIDSPGGGVYGVPEAAAEIRAARGKKPVYAVANSVAASAAYWITSSASEFYVTS 168 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 + +GSIGV + + L+K G+ V + K E +PF ++ +A MQ +D+ Sbjct: 169 SGELGSIGVYASHQDLSAALEKEGIKTTLVSAGKYKTERNPFGPLSKEAEAAMQSRIDAC 228 Query: 186 YHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 Y FVR V+ SRN+ + GR+ ++A + D V +EV L Sbjct: 229 YRTFVRDVARSRNVDAAYVNARMGQGRLVGASDAVAAKMADGVMTFDEVLAKL 281 >gi|117620350|ref|YP_857606.1| putative periplasmic protease [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561757|gb|ABK38705.1| peptidase, S49 (protease IV) family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 335 Score = 83.9 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 108/257 (42%), Gaps = 14/257 (5%) Query: 30 HVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA----TALIVSLSSPGGSAYAGEA 85 ED + I G D++E+ E +S +++ L S GG + Sbjct: 83 KSEDARSRLFVIDFHGS-MDAKEVASLREEVSAVIGVAQPGDEVLLRLESGGGVVHGYGL 141 Query: 86 IFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 +Q+++ + + ++AAS GY+++C ++ I+AA ++VGSIGV+ Q P Sbjct: 142 AASQLQRLRDRDIKLTVAIDKVAASGGYMMACVADQILAAPFAIVGSIGVIAQLPNFNKL 201 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K + + + K + F E + + + ++ + + + F V+E R P Sbjct: 202 LKKHDIEFEMHTAGQYKRTITMFGENDEQGREKFREELGAIHERFKAFVAEHR--PNLDI 259 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 ++ G W ++AK++GL+D + ++ L A + I+ P Sbjct: 260 DSVTTGEHWLASQAKQLGLVDSLCTSDD---YLLAQASQHKVVGIRYSKPKS---LTQKL 313 Query: 265 NLSISSLLEDTIPLMKQ 281 + LE + + Q Sbjct: 314 GQQAAVALESGLGRLWQ 330 >gi|327480845|gb|AEA84155.1| putative periplasmic protease [Pseudomonas stutzeri DSM 4166] Length = 340 Score = 83.9 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 53/271 (19%), Positives = 109/271 (40%), Gaps = 19/271 (7%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGS 79 + + + S V + G I S E+ + + D +++ L S GG Sbjct: 80 AKQTKKSETSARVFVLDFDGDIRASAVENLRHEITALLTMATPQDE---VVLRLESGGGM 136 Query: 80 AYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + + ++++ +T ++AAS GY+++C N I+ A +++GSIGV+ Q Sbjct: 137 VHGYGLAASQLVRIRDAGVPLTVCVDKVAASGGYMMACIGNRILTAPFAILGSIGVVAQL 196 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P V L K V + + + K + F E K + Q+ +D+++ F V+ R Sbjct: 197 PNVHRLLKKHDVDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLDTTHELFKNFVARYRQ 256 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ G +W G A L D + ++ + I+ + P+ + Sbjct: 257 NL--SIDDVATGEVWLGIAALGKHLADELKTSDQYLAERAQEAELFQLHYIQKKSLPERF 314 Query: 259 WFCDLKNLSISSLLE-DTIPLMKQTKVQGLW 288 ++ S+++E + + Q W Sbjct: 315 ------GMAASTIMEHGLLKGWSRLNEQRFW 339 >gi|238919608|ref|YP_002933123.1| periplasmic protease [Edwardsiella ictaluri 93-146] gi|238869177|gb|ACR68888.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 348 Score = 83.9 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 100/224 (44%), Gaps = 6/224 (2%) Query: 32 EDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYAGEAIFR 88 P V + G ++ + L E I ++ ++++ L SPGG + Sbjct: 96 AAEKPCVYVLDFTGSMDAREVGSLREEISAVLAVAGPQDSVLLRLESPGGVVHGYGLAAS 155 Query: 89 AIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 +++++ +T V ++AAS GY+++C ++ IVAA +++GSIGV+ Q P +L K Sbjct: 156 QLKRLRQAGVRLTVAVDKVAASGGYMMACVADRIVAAPFAIIGSIGVVAQIPNFNRWLKK 215 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 V ++ + K + F E + +D ++ F + V R P + Sbjct: 216 NDVDVELHTAGEFKRTLTLFGENTDVGREKFCQELDETHLLFKQFVQ--RQRPSLDVDSV 273 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 + G W G +A + GL+D + +++ + +R ++ Sbjct: 274 ATGEHWYGEQALEKGLVDALSTSDDLLIAEMEQADVIGVRYVRR 317 >gi|238898830|ref|YP_002924512.1| putative peptidase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466590|gb|ACQ68364.1| putative peptidase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 348 Score = 83.9 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 107/249 (42%), Gaps = 14/249 (5%) Query: 28 SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 S P + I G I +E + I + + ++ + L SPGG + Sbjct: 92 SGQHHSQKPCIYVIDFNGSIDAHQVSSLREEVSAILSVMTKED--SVFLRLESPGGVVHG 149 Query: 83 GEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + + + + V ++AAS GY+++C + I++A +++GSIGV+ Q P Sbjct: 150 YGLAASQLARFRQAGVSLVVSVDKIAASGGYMMACVGDHILSAPFAIIGSIGVVAQIPNF 209 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 FL K + ++ + K + F E + + + ++ ++ F + V E R P Sbjct: 210 HRFLQKNNIDVELHTAGEFKRTLTVFGENTEQGREKFCEELNETHLLFKQFVQEKR--PQ 267 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 +S G W G +AK+ GL+D +G ++ L + + I ++ + K+ Sbjct: 268 IDINTVSTGEHWFGVQAKEKGLVDSIGTSDD---WLISKMENHQIIRV-SYQTHKSLIER 323 Query: 262 DLKNLSISS 270 ++ S+ Sbjct: 324 LTGSMVKSA 332 >gi|213424433|ref|ZP_03357246.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 342 Score = 83.5 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 16/250 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSAY 81 + P V I +G ++ + + + A++ L SPGG + Sbjct: 86 GDIATSDKPRVWVIDFKGSMDAHE--VNALREEVTAVLAVAKPGDRAVV-RLESPGGVVH 142 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +Q+++++ +T ++AAS GY+++C + I+AA ++VGSIGV+ Q P Sbjct: 143 GYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPN 202 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 FL + I+ + K + E + Q ++ ++ ++H F V R P Sbjct: 203 FNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMR--P 260 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +A + GL+D + +EV L + + K Sbjct: 261 ALDIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLMEGREVLN----VRYMQRKKLID 316 Query: 261 CDLKNLSISS 270 + + S+ Sbjct: 317 RVTGSAAESA 326 >gi|200390711|ref|ZP_03217322.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603156|gb|EDZ01702.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 348 Score = 83.5 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 102/250 (40%), Gaps = 16/250 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSAY 81 + P V I +G ++ + + + A++ L SPGG + Sbjct: 92 GDIATSDKPRVWVIDFKGSMDAHE--VNALREEVTAVLAVAKPGDRAVV-RLESPGGVVH 148 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +Q+++++ +T ++AAS GY+++C + I+AA ++VGSIGV+ Q P Sbjct: 149 GYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPN 208 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 FL + I+ + K + E + Q ++ ++ +++ F V R P Sbjct: 209 FNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHYLFKEFVQRMR--P 266 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +A + GL+D + +EV L + + K Sbjct: 267 ALDIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLMEGREVLN----VRYMQRKKLID 322 Query: 261 CDLKNLSISS 270 + + S+ Sbjct: 323 RVTGSAAESA 332 >gi|157145601|ref|YP_001452920.1| putative periplasmic protease [Citrobacter koseri ATCC BAA-895] gi|157082806|gb|ABV12484.1| hypothetical protein CKO_01347 [Citrobacter koseri ATCC BAA-895] Length = 351 Score = 83.5 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 111/267 (41%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYA 82 + P + +G ++ + + + ++ ++V L SPGG + Sbjct: 95 GENAATGKPRAWVLDFKGSMDAHE--VSALREEVTAVLAAFKPQDQVVVRLESPGGVVHG 152 Query: 83 GEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +Q++++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 153 YGLAASQLQRLRDKQIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQIPNF 212 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 FL + I+ + K + E + Q ++ ++ ++H F V + R P Sbjct: 213 NRFLKGKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKHFVQQMR--PV 270 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +A + GL+D + ++V L ++ + + Sbjct: 271 LDIEQVATGEHWYGQQALEKGLVDEINTSDDVILRLM------DGYEVFNVRFMQRKKLM 324 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S + + + Q + L Sbjct: 325 DRFTGSAAESADRLLLRWWQRGQKPLM 351 >gi|262043004|ref|ZP_06016147.1| peptidase U7 family SohB protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039606|gb|EEW40734.1| peptidase U7 family SohB protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 360 Score = 83.5 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 54/270 (20%), Positives = 112/270 (41%), Gaps = 21/270 (7%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 + + P + +G ++ +E+ + D +++ L SPGG + Sbjct: 104 GNAEPEGKPRAWVLDFKGSMDAHEVNSLREEITAVLAAAKARDQ---VVIRLESPGGVVH 160 Query: 82 AGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +Q++++++ +T V ++AAS GY+++C +N IV+A +++GSIGV+ Q P Sbjct: 161 GYGLAASQLQRLRDKQIPLTVAVDKVAASGGYMMACVANKIVSAPFAILGSIGVVAQIPN 220 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + FL + I+ + K + E + + ++ ++ ++H F V R P Sbjct: 221 LHRFLKNKDIDIELHTAGQYKRTLTMLGENTEEGRRKFREDLNETHHLFKDFV--HRMRP 278 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +A + GL+D V +E+ L + K Sbjct: 279 GLDIEQVATGEHWYGVQALEKGLVDAVETSDELLLGLMESHEVIG----VRYQQRKKMLD 334 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 S E L+ + +G ++ Sbjct: 335 RF-----TGSAAESADRLLLRWWQRGQKSL 359 >gi|303250487|ref|ZP_07336684.1| putative periplasmic protease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650475|gb|EFL80634.1| putative periplasmic protease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 326 Score = 83.5 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 6/198 (3%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAAS 109 +E+ I +++D +++ L SPGG + +Q+++ +T V ++AAS Sbjct: 124 REIDAVISLANKEDE---VLLRLESPGGVVHGYGLAASQLQRLRTHNIPLTVAVDKVAAS 180 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 GY+++C +N IVAA +++GS+GV+ Q P + L K + + + + K + E Sbjct: 181 GGYMMACVANKIVAAPFAIIGSVGVVAQVPNIHRLLKKHEIDVDVMTAGEYKRTVTLVGE 240 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 K Q Q ++ ++ F + V+++R P ++ G W G +A + L+D + Sbjct: 241 NTEKGKQKFQQELEETHQLFKQFVAQNR--PQLDIEKIATGEHWFGKQALALDLVDEINT 298 Query: 230 QEEVWQSLYALGVDQSIR 247 +++ + ++ Sbjct: 299 SDDLLLNAIKEKEVIELK 316 >gi|260767896|ref|ZP_05876830.1| SohB protein peptidase U7 family [Vibrio furnissii CIP 102972] gi|260615926|gb|EEX41111.1| SohB protein peptidase U7 family [Vibrio furnissii CIP 102972] gi|315179599|gb|ADT86513.1| sohB protein, peptidase U7 family protein [Vibrio furnissii NCTC 11218] Length = 353 Score = 83.1 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 51/263 (19%), Positives = 111/263 (42%), Gaps = 15/263 (5%) Query: 27 WSSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 PH+ + G I +E + I +++ +++ L + GG + Sbjct: 96 GGELDAKRDPHLFVLDFHGSIDAKEVTSLREEVTAILAVAQ--QGDEVLLRLETGGGMVH 153 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 154 GYGLASSQLDRLKAAGLPLTIAVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPN 213 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E + KA + ++ ++ ++ F + E R P Sbjct: 214 FNKLLKKHDIEFEQLTAGEYKRTLTMFGENSDKAREKFKEELEETHVLFKDFIREHR--P 271 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +AK +GL+D + +++ ++ + K Sbjct: 272 DLDLEKVATGEHWFGTQAKALGLVDEIKTSDDLIVDACKNKTVLALHYV-----QKKKLT 326 Query: 261 CDLKNLSISSLLEDTIPLMKQTK 283 L ++ + + L+ + + Sbjct: 327 AKLAGVAGEAADSVFLKLISRGQ 349 >gi|324113144|gb|EGC07119.1| peptidase S49 [Escherichia fergusonii B253] Length = 349 Score = 83.1 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 110/267 (41%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYA 82 + + P V + +G ++ + + + ++ ++V L SPGG + Sbjct: 93 GETLSSDKPRVWVLDFKGSMDAHE--VTALREEITAVLAVYKPQDQVVVRLESPGGVVHG 150 Query: 83 GEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +Q++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 151 YGLAASQLQRLRDHNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQLPNF 210 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 211 NRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHLLFKDFVKRMR--PS 268 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +A + GL+D + ++V + R++ + + Sbjct: 269 LDIDQVATGEHWYGQQALEKGLVDEINTSDDVI------LGLMNGREVVNVRYMQRKKLL 322 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S + + + Q + L Sbjct: 323 DRFTGSAAESADRLLLRWWQRGQKPLM 349 >gi|229358029|ref|YP_943339.2| putative periplasmic protease [Psychromonas ingrahamii 37] Length = 349 Score = 83.1 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 111/267 (41%), Gaps = 18/267 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 S E + I +G I+ +E+ + + D + V L S GG + Sbjct: 92 SGLDEKGLAQLYVIDFKGSIDAKEVTSLREEITAILGVATEQDE---VFVRLESGGGMVH 148 Query: 82 AGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +Q++++ K V ++AAS GY+++C +N I+AA +++GSIGV+ Q P Sbjct: 149 GYGLAASQLQRLRDHKIPLTISVDKVAASGGYMMACVANKIIAAPFAILGSIGVIAQIPN 208 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E + + ++ ++ F + VS+ R+ Sbjct: 209 FNKVLKKHDIEFEQLTAGEYKRTLTMFGENDQAGRDKFKQELEETHDLFKQFVSQQRSQI 268 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +A + L+D + ++ L R I + F Sbjct: 269 --DIDKVATGEHWYGLQAIERNLVDQISTSDDY------LLTQLDSRHIIQIKYTQRKKF 320 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGL 287 D + LE+++ + QT+ L Sbjct: 321 ADKLGHAAVIALENSLLKIFQTQSNKL 347 >gi|289829092|ref|ZP_06546772.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 317 Score = 83.1 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 12/219 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSAY 81 + P V I +G ++ + + + A++ L SPGG + Sbjct: 92 GDIATSDKPRVWVIDFKGSMDAHE--VNALREEVTAVLAVAKPGDRAVV-RLESPGGVVH 148 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +Q+++++ +T ++AAS GY+++C + I+AA ++VGSIGV+ Q P Sbjct: 149 GYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPN 208 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 FL + I+ + K + E + Q ++ ++ ++H F V R P Sbjct: 209 FNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMR--P 266 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 ++ G W G +A + GL+D + +EV L Sbjct: 267 ALDIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLME 305 >gi|220934776|ref|YP_002513675.1| putative periplasmic protease [Thioalkalivibrio sp. HL-EbGR7] gi|219996086|gb|ACL72688.1| putative periplasmic protease [Thioalkalivibrio sp. HL-EbGR7] Length = 334 Score = 83.1 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 97/256 (37%), Gaps = 17/256 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81 ++N P V + G I + QE+ + + ++ + S GG Sbjct: 84 EKARDENRPRVFVLRFHGDIRATHVDNLRQEVSAVLTQAR--PGQDRVVACIESGGGLVA 141 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPY 140 + +++ +T + A++G + A N IVAA ++VGSIGV+ Q P Sbjct: 142 PYGLGAAQLARLREAGVDLTVAVDRVAASGGYLMAAVANRIVAAPFAIVGSIGVVAQIPN 201 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 V L + V I+ + K + E P+ + + ++ + F + R P Sbjct: 202 VNRLLKRHDVDIEMHTAGQFKRTLTVLGENTPEGREKFKQELEEIHALFKGYLKRYR--P 259 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 L+ G W G +A +GL+D + +++ L + + + K Sbjct: 260 TLDLDKLATGEHWYGEQALPLGLVDELATSDDL------LMGLSKEADLYEVHYQKREPL 313 Query: 261 CDLKNLSISSLLEDTI 276 L++ +E + Sbjct: 314 ARRITLAVEGAIERAL 329 >gi|288935905|ref|YP_003439964.1| peptidase S49 domain protein [Klebsiella variicola At-22] gi|288890614|gb|ADC58932.1| Peptidase S49 domain protein [Klebsiella variicola At-22] Length = 363 Score = 83.1 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 107/250 (42%), Gaps = 16/250 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 + + P + +G ++ +E+ + D +++ L SPGG + Sbjct: 107 GNVEPEGKPRAWVLDFKGSMDAHEVNSLREEITAVLAAAKARDQ---VVIRLESPGGVVH 163 Query: 82 AGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +Q++++++ +T V ++AAS GY+++C +N IV+A +++GSIGV+ Q P Sbjct: 164 GYGLAASQLQRLRDKQIPLTVAVDKVAASGGYMMACVANKIVSAPFAILGSIGVVAQIPN 223 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + FL + I+ + K + E + + ++ ++ ++H F V R P Sbjct: 224 LHRFLKNKDIDIELHTAGQYKRTLTMLGENTEEGRRKFREDLNETHHLFKDFV--HRMRP 281 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +A + GL+D V +E+ L + K Sbjct: 282 GLDIEQVATGEHWYGVQALEKGLVDAVETSDELLLGLMESHEVIG----VRYQQRKKMLD 337 Query: 261 CDLKNLSISS 270 + + S+ Sbjct: 338 RFTGSAAESA 347 >gi|167761710|ref|ZP_02433837.1| hypothetical protein BACSTE_00044 [Bacteroides stercoris ATCC 43183] gi|167700436|gb|EDS17015.1| hypothetical protein BACSTE_00044 [Bacteroides stercoris ATCC 43183] Length = 305 Score = 83.1 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 12/224 (5%) Query: 29 SHVEDNSPHVARIAIRGQIE--------DSQELIERIERISRDDSATALIVSLSSPGGSA 80 S + A I + G + + E I + + ++++ + S GG+ Sbjct: 68 SFSDAPQGSTAIIPVHGTMLKYGTYCSYGTTEYAALIRDAADSANISSVLCDIDSGGGAV 127 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET--SLVGSIGVLFQY 138 A + AI K++ + ++ ASA Y + + I+A+ T + GSIGV+ + Sbjct: 128 DAIAPLVDAILYAKSKGKAVVAHCDLCASAAYYAASYCDEIIASNTISAEFGSIGVMMSF 187 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV-DSSYHWFVRLVSESR 197 P + + GV + ++ S+ + +PF ++D D F V ++R Sbjct: 188 PDYAKYYENAGVKVHTIYSNLSDYKNAPFEAAKKGDYASIRDEELDPLARDFQANVRKNR 247 Query: 198 N-IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +T L GR++ +A KVGLID +G Q+ + + Sbjct: 248 GECLKQETEGLLRGRMFYAEDALKVGLIDSIGNQDYAVRRSREI 291 >gi|119864263|gb|ABM03740.1| sohB peptidase. Serine peptidase. MEROPS family S49 [Psychromonas ingrahamii 37] Length = 360 Score = 83.1 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 111/267 (41%), Gaps = 18/267 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 S E + I +G I+ +E+ + + D + V L S GG + Sbjct: 103 SGLDEKGLAQLYVIDFKGSIDAKEVTSLREEITAILGVATEQDE---VFVRLESGGGMVH 159 Query: 82 AGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +Q++++ K V ++AAS GY+++C +N I+AA +++GSIGV+ Q P Sbjct: 160 GYGLAASQLQRLRDHKIPLTISVDKVAASGGYMMACVANKIIAAPFAILGSIGVIAQIPN 219 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E + + ++ ++ F + VS+ R+ Sbjct: 220 FNKVLKKHDIEFEQLTAGEYKRTLTMFGENDQAGRDKFKQELEETHDLFKQFVSQQRSQI 279 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +A + L+D + ++ L R I + F Sbjct: 280 --DIDKVATGEHWYGLQAIERNLVDQISTSDDY------LLTQLDSRHIIQIKYTQRKKF 331 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGL 287 D + LE+++ + QT+ L Sbjct: 332 ADKLGHAAVIALENSLLKIFQTQSNKL 358 >gi|42523650|ref|NP_969030.1| putative periplasmic protease [Bdellovibrio bacteriovorus HD100] gi|39575857|emb|CAE80023.1| SohB protein, peptidase U7 family [Bdellovibrio bacteriovorus HD100] Length = 339 Score = 83.1 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 108/269 (40%), Gaps = 15/269 (5%) Query: 26 SWSSHVEDNSPHVARIAIRG-----QIEDSQELIERIERISRDDSATALIVSLSSPGGSA 80 + S + + I G +E+ +E + I ++ + ++V + SPGG Sbjct: 80 ALDSKSSNGDKKIFVIDFDGDVKASAVENLREEVTAILTLAT--PSDEVVVRVESPGGVV 137 Query: 81 YAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + + +++ + +T ++AAS GYL+S +N I+ A ++VGSIGV+ Q P Sbjct: 138 HGYGLAASQLLRIREKGIPLTVCVDKVAASGGYLMSVTANKILCAPFAIVGSIGVVAQLP 197 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + L K V K + K S E+ K + + ++ ++ F VS R Sbjct: 198 NLHRLLKKHDVDYKEYTAGEFKRTVSLLGEITDKGEEKFKQQLEDTHTLFKSFVSRFR-- 255 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 P ++ G W G +A L+D + ++ +L ++ Sbjct: 256 PQLNLAEVATGEYWYGEQALTKLLVDEIRTSDDYLLTLSEKHQVVKVKF-----EHHESL 310 Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 L + +L + + +++ + + Sbjct: 311 SDKLTGVLGKALKKGALSAVEELETRRFL 339 >gi|229590082|ref|YP_002872201.1| putative periplasmic protease [Pseudomonas fluorescens SBW25] gi|229361948|emb|CAY48848.1| putative peptidase [Pseudomonas fluorescens SBW25] Length = 341 Score = 83.1 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 103/248 (41%), Gaps = 12/248 (4%) Query: 33 DNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAGEAIFRA 89 D P V + G I+ S + L I + + +++ L S GG ++ Sbjct: 89 DAKPRVFVLDFDGDIKASATESLRHEITALLSLATPKDEVVLRLESGGGMVHSYGLASSQ 148 Query: 90 IQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 + +++ +T ++AAS GY+++C I++A +++GSIGV+ Q P V L K Sbjct: 149 LARIRQAGVPLTVCIDKVAASGGYMMACIGEKIISAPFAILGSIGVVAQLPNVNRLLKKH 208 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 + + + + K + F E K + Q+ +D ++ F VS R P ++ Sbjct: 209 DIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLDITHQLFKNFVSRYR--PQLAIDDVA 266 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 G +W G A L+D + +E + ++ + + + L+ Sbjct: 267 TGEVWLGVAALDKQLVDELQTSDEYLATKAKTA------EVFHLHYAERKSLQERVGLAA 320 Query: 269 SSLLEDTI 276 S ++ + Sbjct: 321 SGSVDRVL 328 >gi|325497454|gb|EGC95313.1| periplasmic protease [Escherichia fergusonii ECD227] Length = 349 Score = 83.1 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 111/267 (41%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYA 82 + + P V + +G ++ + + + ++ ++V L SPGG + Sbjct: 93 GETLSSDKPRVWVLDFKGSMDAHE--VTALREEITAVLAVYKPQDQVVVRLESPGGVVHG 150 Query: 83 GEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +Q++++ +T ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 151 YGLAASQLQRLRDHNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQLPNF 210 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 FL + I+ + K + E + + ++ ++ ++ F V R P Sbjct: 211 NRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHLLFKDFVKRMR--PS 268 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +A + GL+D + ++V + R++ + + Sbjct: 269 LDIDQVATGEHWYGQQALEKGLVDEINTSDDVI------LGLMNGREVVNVRYMQRKKLL 322 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S++ + + Q + L Sbjct: 323 DRFTGSVAESADRLLLRWWQRGQKPLM 349 >gi|238786162|ref|ZP_04630114.1| Protease 4 [Yersinia bercovieri ATCC 43970] gi|238712931|gb|EEQ04991.1| Protease 4 [Yersinia bercovieri ATCC 43970] Length = 294 Score = 83.1 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 99/286 (34%), Gaps = 38/286 (13%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 M FV + I +++L ++ VY + + + + + G + D Sbjct: 1 MNFVREFILNLFLILLILIGVGVYLQFQTKPVEPVKGALLVNLSGVVVDQPAVNNKLRQW 60 Query: 52 ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92 +++E I D++ +++SLS G+ + I +A+++ Sbjct: 61 GRELLGASSNRLQENSLFDVVETIRLAKTDNNINGIVLSLSDFTGADQPSLQYIGKALRE 120 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 ++ I + + Y ++ +N I + V G Y K L+KL V+ Sbjct: 121 FRDSGKPIYAIGDSYNQNQYYLASFANKIYLSPQGAVDLHGFASNNLYYKSLLEKLKVTT 180 Query: 153 KSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK------- 203 + K+ P +++P A + + + ++ V+ +R + ++ Sbjct: 181 NIFRVGTFKSAVEPMIRDDMSPAAREADSRWIGGLWQNYLTAVAANRQLTAEQLFPGAAA 240 Query: 204 -TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L A L+D + + EV L R+ Sbjct: 241 VISGLQAAGGSAAKYALDNKLVDQLASRPEVESELIKTFGWDKKRQ 286 >gi|18313592|ref|NP_560259.1| protease IV, conjectural [Pyrobaculum aerophilum str. IM2] gi|18161137|gb|AAL64441.1| protease IV, conjectural [Pyrobaculum aerophilum str. IM2] Length = 548 Score = 83.1 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 45/251 (17%), Positives = 103/251 (41%), Gaps = 22/251 (8%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSS------HVEDNSPHVARIAIRGQIEDS--QELIERI 57 K + + +++ ++ ++ + P + + I +E +LI + Sbjct: 4 KFVTFGVALALAISVAAIFLVLTTYKPSPPPPQPAKPKIVLVPIDFVLESPAVDKLISAL 63 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 +++ +++ ++SPGG+ A EA++ + + K + + +AAS Y ++ A Sbjct: 64 IAVAQRGDVAGIVLLINSPGGTVSATEALYTTVAGINKTKYAVV--NGLAASGAYYVAVA 121 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 + I A +S VGSIGV+ + F D + + P+K + Sbjct: 122 TERIYATPSSWVGSIGVIAVMWPEEYFYD---IPDYIYTTGPLKYYGR--------ELTD 170 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLS-DGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 + ++ FV+ V + R + + I+T +AK++GL+D +GG + + Sbjct: 171 YYNDIERVRLNFVQAVLKGRAGRIKASPDVFETASIFTADQAKELGLVDEIGGIFDAVRD 230 Query: 237 LYALGVDQSIR 247 + + Sbjct: 231 MAQRLGLREYE 241 >gi|90415994|ref|ZP_01223927.1| probable protease [marine gamma proteobacterium HTCC2207] gi|90332368|gb|EAS47565.1| probable protease [marine gamma proteobacterium HTCC2207] Length = 363 Score = 83.1 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 53/237 (22%), Positives = 103/237 (43%), Gaps = 15/237 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSA 80 + + P V + G + S +E+ + + S +D ++V L S GG Sbjct: 103 PEAELPAQKPRVFVVNFYGNVSASAVTNLREEVTAILSQASANDE---VVVRLESGGGMV 159 Query: 81 YAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 ++ + +++ R +T ++AAS GY+++C ++ I+AA +++GSIGV+ Q P Sbjct: 160 HSYGLASSQLDRIRKRNIPLTVCVDKVAASGGYMMACVADKIIAAPFAILGSIGVVAQLP 219 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 L K V + + + K + F E + + ++ ++ F V E R Sbjct: 220 NFNKVLKKHDVEFELLTAGEHKRTLTMFGENTDSGREKFLEELEDTHSLFKEFVQERR-- 277 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 P +++ G +W G A V L+D + +E L A + + +I K Sbjct: 278 PQLDIDLIATGEVWFGTRALNVALVDDLQTSDE---YLVARAQEADVYEIAFVLKKK 331 >gi|238763116|ref|ZP_04624082.1| protease sohB [Yersinia kristensenii ATCC 33638] gi|238698615|gb|EEP91366.1| protease sohB [Yersinia kristensenii ATCC 33638] Length = 230 Score = 83.1 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 108/239 (45%), Gaps = 12/239 (5%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAAS 109 +E+ + + D +++ L SPGG + +++++++ +T V ++AAS Sbjct: 3 EEISAVLAVATAQDE---VLLRLESPGGVVHGYGLAASQLERLRHKGIRLTVAVDKVAAS 59 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 GY+++C ++ I++A +++GSIGV+ Q P L K + ++ + K + F E Sbjct: 60 GGYMMACVADRIISAPFAIIGSIGVVAQIPNFHRLLKKNDIDVELHTAGEFKRTLTLFGE 119 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 + + ++ ++ ++ F + V + R P ++ G W G +AK+ GL+D +G Sbjct: 120 NTEQGREKFREDLNETHLLFKQFVQQQR--PSLDIDAVATGEHWFGTQAKEKGLVDAIGT 177 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 ++ + + ++ + D S++ + + Q + L Sbjct: 178 SDDFL--IAEM----DNHEVIGVRYSRRKRLMDRFTGSVAESADRLLLRWWQRGEKPLL 230 >gi|213967047|ref|ZP_03395197.1| peptidase, U7 family [Pseudomonas syringae pv. tomato T1] gi|301385232|ref|ZP_07233650.1| putative periplasmic protease [Pseudomonas syringae pv. tomato Max13] gi|302130173|ref|ZP_07256163.1| putative periplasmic protease [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928369|gb|EEB61914.1| peptidase, U7 family [Pseudomonas syringae pv. tomato T1] Length = 340 Score = 83.1 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 50/262 (19%), Positives = 102/262 (38%), Gaps = 15/262 (5%) Query: 33 DNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + V + G I+ S + I + ++ D +++ L S GG ++ Sbjct: 88 EPKARVYVLDFDGDIKASATESMRHEITALLTLATDKD--EVVLRLESGGGMVHSYGLAS 145 Query: 88 RAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 + +++ +T ++AAS GY+++C N I++A +++GSIGV+ Q P V L Sbjct: 146 SQLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQLPNVNRLLK 205 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 K + + + + K + F E K + Q +D ++ F V+ R P Sbjct: 206 KHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASYR--PQLSIDE 263 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 ++ G +W G A L+D + +E + + + + Sbjct: 264 VATGEVWLGMAAVDKLLVDELKTSDEYLAERARQADVFHLHYV-----QRKSLQERMGMA 318 Query: 267 SISSLLEDTIPLMKQTKVQGLW 288 + +S + + Q W Sbjct: 319 AANSADQLATKWWGRLTQQRFW 340 >gi|222825064|dbj|BAH22222.1| putative minor capsid protein c [Wolbachia endosymbiont of Cadra cautella] Length = 358 Score = 83.1 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 48/213 (22%), Positives = 96/213 (45%), Gaps = 1/213 (0%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 + +++ E+I + D S +I+ + SPGG + I + + +K +I ++ Sbjct: 54 MTSYEQIEEQITQALADSSIETIILEIDSPGGEVNGIFDLADFIYESRGKKRIIAIANDD 113 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 A SA Y I+ ++ I TS VGSIGV+ + F +K G+ +V + K + +P Sbjct: 114 AYSAAYAIASSAEKIFLTRTSGVGSIGVIASHIDQSGFDEKCGIKYTTVFAGSRKNDLNP 173 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 + ++++ ++ V+ Y V L++ +RN+ + G + G +A ++GL D Sbjct: 174 HEPITSESLENLKSEVNRLYEMLVELIARNRNLSVEAIKSTEAGLYF-GEKAVEIGLADG 232 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 + E + + + I D N Sbjct: 233 ITILSEFKYINKNRSITMNEQTITDLKEETNNL 265 >gi|262402596|ref|ZP_06079157.1| SohB protein peptidase U7 family [Vibrio sp. RC586] gi|262351378|gb|EEZ00511.1| SohB protein peptidase U7 family [Vibrio sp. RC586] Length = 353 Score = 83.1 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 49/267 (18%), Positives = 106/267 (39%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 PH+ + G I +E + I +++ +++ L + GG + Sbjct: 97 GELESKREPHLFVLDFHGSIDAKEVASLREEVSAILAVAQAGD--EVLLRLETGGGMVHG 154 Query: 83 GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 155 YGLASSQLDRIKEAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVVAQLPNF 214 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + + + + K + F E KA + ++ ++ F + + R P Sbjct: 215 HKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKARDKFKLELEETHQLFKDFIRDHR--PA 272 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +AK +GL+D + +++ + + + + Sbjct: 273 LDLDKVATGEHWFGTQAKTLGLVDEIRTSDDLIVAACK------NKTVLLLRYVQKKKLT 326 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D ++ + + + L Sbjct: 327 DKLAGVAGDAADNVLLKLISRGQRPLV 353 >gi|290475296|ref|YP_003468184.1| putative peptidase [Xenorhabdus bovienii SS-2004] gi|289174617|emb|CBJ81411.1| putative peptidase [Xenorhabdus bovienii SS-2004] Length = 348 Score = 82.7 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 101/242 (41%), Gaps = 12/242 (4%) Query: 29 SHVEDNSPHVARIAIRGQIE--DSQELIERIER--ISRDDSATALIVSLSSPGGSAYAGE 84 S ++ + +G ++ + L E I D +++ L SPGG + Sbjct: 93 SQKVLQKSNLYVLDFKGSMDAHEVDSLREEISAILAVADSK-DEVLLRLESPGGMVHGYG 151 Query: 85 AIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + +++ + V ++AAS GY+++C ++ I+AA +++GSIGV+ Q P + Sbjct: 152 LAASQLARLRQKGIRLTIAVDKVAASGGYMMACVADRIIAAPFAIIGSIGVVAQLPNIHR 211 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K + ++ + K + E + Q Q+ ++ ++ F + + R P Sbjct: 212 LLKKNDIDVELHTAGEYKRTLTVLGENTEQGRQKFQEDLNETHQLFKSFIYQHR--PSLD 269 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +AK+ GLID VG ++ ++ K + Sbjct: 270 VEKVATGEYWYGTQAKENGLIDDVGVSDDFLIEQIEHCEVIG----VSYSRRKRVIERFM 325 Query: 264 KN 265 + Sbjct: 326 GS 327 >gi|213027718|ref|ZP_03342165.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 254 Score = 82.7 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 12/219 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSAY 81 + P V I +G ++ + + + A++ L SPGG + Sbjct: 34 GDIATSDKPRVWVIDFKGSMDAHE--VNALREEVTAVLAVAKPGDRAVV-RLESPGGVVH 90 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +Q+++++ +T ++AAS GY+++C + I+AA ++VGSIGV+ Q P Sbjct: 91 GYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPN 150 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 FL + I+ + K + E + Q ++ ++ ++H F V R P Sbjct: 151 FNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMR--P 208 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 ++ G W G +A + GL+D + +EV L Sbjct: 209 ALDIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLME 247 >gi|46804778|dbj|BAD16787.1| similar to minor capsid protein GPC of phage lambda [Wolbachia phage WOcauB1] Length = 350 Score = 82.7 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 48/213 (22%), Positives = 96/213 (45%), Gaps = 1/213 (0%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 + +++ E+I + D S +I+ + SPGG + I + + +K +I ++ Sbjct: 64 MTSYEQIEEQITQALADSSIETIILEIDSPGGEVNGIFDLADFIYESRGKKRIIAIANDD 123 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 A SA Y I+ ++ I TS VGSIGV+ + F +K G+ +V + K + +P Sbjct: 124 AYSAAYAIASSAEKIFLTRTSGVGSIGVIASHIDQSGFDEKCGIKYTTVFAGSRKNDLNP 183 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 + ++++ ++ V+ Y V L++ +RN+ + G + G +A ++GL D Sbjct: 184 HEPITSESLENLKSEVNRLYEMLVELIARNRNLSVEAIKSTEAGLYF-GEKAVEIGLADG 242 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 + E + + + I D N Sbjct: 243 ITILSEFKYINKNRSITMNEQTITDLKEETNNL 275 >gi|284988655|ref|YP_003407209.1| peptidase S49 [Geodermatophilus obscurus DSM 43160] gi|284061900|gb|ADB72838.1| peptidase S49 [Geodermatophilus obscurus DSM 43160] Length = 417 Score = 82.7 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 60/313 (19%), Positives = 112/313 (35%), Gaps = 43/313 (13%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPH-------------VARIAIRGQIEDS 50 V+ + + + +V V + P +A + G I S Sbjct: 75 VVLAVVALGLTVVMVLALVGLTAGGDTAPSGPPTETVWGAADAPARLIAV-PVTGVILGS 133 Query: 51 Q-------------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR- 96 + ++ + I+ + A LI+ L++PGG+ + AI A+++ + R Sbjct: 134 ESDGVTFGGATYGYDVADTID-ALETEDADGLILELNTPGGTIHGSRAIADAVERYQKRT 192 Query: 97 -KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL------- 148 V+ V M+AS G ++ IVA SLVGSIGV+ + + Sbjct: 193 GNQVLAHVQGMSASGGMYAMAGADQIVADHGSLVGSIGVIMGPFQRFRDVTGIPGSLLEP 252 Query: 149 ------GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 GV+ + + K +P+ ++ + ++ +D Y FV VS++R IP Sbjct: 253 GVTTDGGVTEEYLTRGRGKDFGNPYRDMTEEERAVLGRGLDREYEAFVSWVSQARGIPPQ 312 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + ++ A GL+D V G+EE ++ + D Sbjct: 313 TIVDELGAFVFDSYTAVDRGLVDRVLGREEAYRHAAEINGADPDDTRVDRVVAPGLVESL 372 Query: 263 LKNLSISSLLEDT 275 L + Sbjct: 373 LAANGPLGGIGAA 385 >gi|329297657|ref|ZP_08254993.1| putative inner membrane peptidase [Plautia stali symbiont] Length = 348 Score = 82.7 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 49/213 (23%), Positives = 100/213 (46%), Gaps = 6/213 (2%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYA 82 + + E P + + +G ++ + L E I ++ +++ L SPGG + Sbjct: 90 AKAGVTEAAKPTLYVLEFKGSMDAGEVSSLREEISAVLAVAQPGDEVLLRLESPGGVVHG 149 Query: 83 GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +Q++++ + V ++AAS GY+++C ++ IVAA S++GSIGV+ Q P Sbjct: 150 YGLAASQLQRLRDAGLQLTAVVDKVAASGGYMMACVADRIVAAPFSIIGSIGVVAQIPNF 209 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L + + ++ + K + F E + + Q+ ++ ++ F V + R P Sbjct: 210 NRLLKRNDIDVELHTAGQYKRTLTLFGENTEEGREKFQEDLNETHQLFKDFVHQMR--PA 267 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 ++ G W G +A +GLID +G + + Sbjct: 268 LDLDKVATGEHWYGRQALDLGLIDEIGTSDALI 300 >gi|256822003|ref|YP_003145966.1| putative periplasmic protease [Kangiella koreensis DSM 16069] gi|256795542|gb|ACV26198.1| Peptidase S49 domain protein [Kangiella koreensis DSM 16069] Length = 384 Score = 82.7 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 99/216 (45%), Gaps = 12/216 (5%) Query: 29 SHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYA 82 D+ + I G I S +E+ + ++ D +++ L SPGG ++ Sbjct: 127 EGSSDSPQRMYVIDFEGDIHASGVESLREEVTAILATANKSDQ---VMIRLESPGGLVHS 183 Query: 83 GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 ++++++ + V E+AAS GY+++C ++ ++AA +++GSIGV+ + P Sbjct: 184 YGLAASQLKRIRDAGLKLTISVDEVAASGGYMMACVADELIAAPFAILGSIGVVAEIPNF 243 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + + + K + F + + + + ++ ++ F + E+R P Sbjct: 244 NRLLQKANIDYEQHTAGQHKRTLTMFGQNTTASREKFKQELEETHQLFKAFIHENR--PA 301 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 ++ G W G +A ++GL+D + ++V Sbjct: 302 LDLNKVATGEHWYGRQALELGLVDKLQTSDDVILDA 337 >gi|262368527|ref|ZP_06061856.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262316205|gb|EEY97243.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 320 Score = 82.7 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 111/266 (41%), Gaps = 15/266 (5%) Query: 28 SSHVEDNSPHVARIAIRG-----QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 S H + + V + +G +E +E I I ++ ++V L SPGG + Sbjct: 49 SRHRKKANQKVYILDFKGDTAATAVESLREEITLILATAKAGR-DRVVVRLESPGGMVHG 107 Query: 83 GEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++++ +T ++AAS GY+++C +N I+AA ++VGSIGV+ Q P Sbjct: 108 YGLAAAQLVRLRDAGFNLTICVDKVAASGGYMMACIANQIIAAPFAVVGSIGVVAQVPNF 167 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L + + + + K + F E + ++ + ++ F V + R P Sbjct: 168 NRLLKEHNIDFELYTAGQYKRTVTMFGENTAEGKAKFEEELQQTHVLFKHFVEKYR--PQ 225 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +A + L+D + + L L D + I + K Sbjct: 226 LNVEKVATGEHWYGQDALDLNLVDQLQTSD---AYLLNLLTDHDVYVI---STRKKPTLG 279 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGL 287 + L + + + +P + ++ L Sbjct: 280 EKLGLQAAQMADALVPAVMNKVIETL 305 >gi|126737104|ref|ZP_01752839.1| Periplasmic serine protease [Roseobacter sp. SK209-2-6] gi|126721689|gb|EBA18392.1| Periplasmic serine protease [Roseobacter sp. SK209-2-6] Length = 305 Score = 82.7 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 22/228 (9%) Query: 40 RIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + + G I + + + + D A A+++ + SPGG + Sbjct: 66 LLRLHGTIMPRGGMMARMSGGASLEMFQKAFSQAASDAHAQAIVIEVDSPGGMVEQVQET 125 Query: 87 FRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I + I + +AASA Y I+ A++ +V + VGSIGV + + L Sbjct: 126 ASMIYSARRSGRPIVAVANSLAASAAYWIASAADELVVTPSGRVGSIGVYTMHDNLAVAL 185 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 +K G+ + + K E PF ++ P+A Q VD++Y F V+E R + + Sbjct: 186 EKAGIERSVISAGARKVESLPFGKLAPEARAATQAQVDATYERFTHDVAEFRGVASEVVR 245 Query: 206 V--------LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 GR + EA ++G+ D V E Q L G Sbjct: 246 ADPEEAEAHFGGGRAYHAQEAVRLGMADRVATLSETIQRLSTEGRVPK 293 >gi|161503176|ref|YP_001570288.1| putative periplasmic protease [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864523|gb|ABX21146.1| hypothetical protein SARI_01244 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 363 Score = 82.7 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 107/268 (39%), Gaps = 18/268 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSAY 81 + P V I +G ++ + + + A++ L SPGG + Sbjct: 107 GDIATADKPRVWVIDFKGSMDAHE--VNALREEVTAVLAVAKPGDRAVV-RLESPGGVVH 163 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +Q+++++ +T ++AAS GY+++C + IVAA ++VGSIGV+ Q P Sbjct: 164 GYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVAEKIVAAPFAIVGSIGVVAQIPN 223 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 FL + I+ + K + E + Q ++ ++ ++H F V R P Sbjct: 224 FNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKDFVQRMR--P 281 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +A K GL+D + +EV R++ + + Sbjct: 282 TLDIEQVATGEHWYGQQALKKGLVDEINTSDEVI------LGLMDGREVLNVRYMQRKKL 335 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + S + + + Q + L Sbjct: 336 IERVTGSAAESADRLLLRWWQRGQKPLM 363 >gi|320540529|ref|ZP_08040179.1| putative predicted inner membrane peptidase [Serratia symbiotica str. Tucson] gi|320029460|gb|EFW11489.1| putative predicted inner membrane peptidase [Serratia symbiotica str. Tucson] Length = 348 Score = 82.7 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 113/256 (44%), Gaps = 18/256 (7%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 S +E P + + +G ++ +E+ + S D +++ L SPGG + Sbjct: 92 SGTIEVTQPCLYVLDFKGSMDAHEVTSLREEISAVLAVASTQDE---VLLRLESPGGVVH 148 Query: 82 AGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +++++ +T V +AAS GY+++C ++ IVAA +++GSIGV+ Q P Sbjct: 149 GYGLAASQLERLRKGGIRLTVAVDNVAASGGYMMACVADRIVAAPFAVIGSIGVVAQIPN 208 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + ++ + K + F E + + + ++ ++ F + V + R P Sbjct: 209 FHRLLKKNDIDVELYTAGQFKRTLTLFGENTEQGREKFRSDLNKTHELFKQFVHQQR--P 266 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 +S G W G +AK+ GLID +G +++ L + K+ + Sbjct: 267 SLDIGSVSTGEHWFGTQAKEKGLIDAIGTSDDL------LIAEVDSYKVISVRYTRRKRL 320 Query: 261 CDLKNLSISSLLEDTI 276 D S++ ++ + Sbjct: 321 VDRFTASVAESVDRLL 336 >gi|157161458|ref|YP_001458776.1| S49 family peptidase [Escherichia coli HS] gi|157067138|gb|ABV06393.1| putative peptidase, S49 (protease IV) family [Escherichia coli HS] Length = 288 Score = 82.4 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 88/218 (40%), Gaps = 14/218 (6%) Query: 38 VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 VA I I G + + + D T + + + SPGG Sbjct: 71 VAVIPICGTLVQKLGSLRPYSGMTGYDGIRQAFLTAMEDPDITGICLDIDSPGGEVAGCF 130 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + I + +KP+ + E A SA Y I+ A++ I T+ VGS+GV+ + Sbjct: 131 DLVDVIYGARGKKPIHAILTESAYSAAYAIASAADRISVPRTAGVGSVGVITMHLDWTQR 190 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + G+ + + KAE +P E++ +A+ +Q +++ FV V+ +R I Sbjct: 191 IKDDGLKVTIITYGSRKAEGAPLRELSDEALAAIQQDINTMGELFVNTVARNRGISAKVI 250 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + A+ ++GL D V + +++L Sbjct: 251 KSTQAAC-FMAADGVELGLADEVCPPDAAFRNLLEKTG 287 >gi|297626322|ref|YP_003688085.1| SppA, Periplasmic serine proteases [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922087|emb|CBL56655.1| SppA, Periplasmic serine proteases [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 418 Score = 82.4 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 51/282 (18%), Positives = 98/282 (34%), Gaps = 30/282 (10%) Query: 31 VEDNSPHVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSP 76 + I++ G I ++ + I+ ++ D SA L++ + +P Sbjct: 113 SSSAKNTLRAISVSGTIQASGGSSSGMFSSATYGYDVAKLIDSLTAD-SAAGLVLLMDTP 171 Query: 77 GGSAYAGEAIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GGS AI A+ + + R K V M+AS G N I A + ++VGSIGV Sbjct: 172 GGSINGSRAIADAVDRYEQRTGKKSFAFVEGMSASGGMYAMAGVNRIYADQGTMVGSIGV 231 Query: 135 LFQYPYVKPFLDKLG-------------VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 + + + + + K + F ++ K + Sbjct: 232 IMGPFARYRDVTAVDGGLLGNGVTASGGIDQFYLTQGEAKDFGNAFRDMTQKERDVYTAG 291 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 + Y FV VS SR I + ++ AK L+D V G+EE ++ + Sbjct: 292 LSREYDAFVNWVSTSRGIAPETIRNDLGAYMFDAQTAKDKHLVDDVLGREEAFRQIARDA 351 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 + + + + + + + + + K Sbjct: 352 GVDPDQTKLVTDAEPGFLSSLMGSRKQAFGHGEALQAGEGVK 393 >gi|91782184|ref|YP_557390.1| serine peptidase [Burkholderia xenovorans LB400] gi|91686138|gb|ABE29338.1| protein C, Serine peptidase, MEROPS family S49 [Burkholderia xenovorans LB400] Length = 323 Score = 82.4 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 91/218 (41%), Gaps = 19/218 (8%) Query: 38 VARIAIRGQ------------------IEDSQELIERIERISRDDSATALIVSLSSPGGS 79 +A I ++G + + + D + A+++ + SPGG Sbjct: 63 IAVIQVQGMLLSRTGAAGPCLMTGADFVTGYDGIRANVSAALADPAVRAIVLDIDSPGGE 122 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + AI + RKP++ +E A SA Y ++ A + T G +GVL + Sbjct: 123 IAGLLDLADAIYAARRRKPLLAVCNECAFSAAYCLASACEQVTVPRTGGTGGVGVLVVHV 182 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 L G+++ + S KA+ + + ++ A + ++ VD++ + +V+ +R + Sbjct: 183 DFSKALTDAGIAVTLITSGEHKADGNEYRPLSRDAYRRIKADVDATAKMLIAMVAHNRGL 242 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 + ++G + GA + GL D V +E SL Sbjct: 243 SQAQVRD-TEGATYLGAAGVRAGLADAVMSPDEALLSL 279 >gi|317048300|ref|YP_004115948.1| peptidase S49 domain-containing protein [Pantoea sp. At-9b] gi|316949917|gb|ADU69392.1| Peptidase S49 domain protein [Pantoea sp. At-9b] Length = 348 Score = 82.4 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 57/268 (21%), Positives = 112/268 (41%), Gaps = 14/268 (5%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER--ISRDDSATALIVSLSSPGGSAY 81 + S E P + + +G ++ + L E I +++ L SPGG + Sbjct: 90 AKSGVTETEKPTLYVLEFKGSMDAGEVSSLREEISAVLAVATPG-DEVLLKLESPGGVVH 148 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +Q++++ + V ++AAS GY+++C ++ IVAA S++GSIGV+ Q P Sbjct: 149 GYGLAASQLQRLRDAGLTLTAAVDKVAASGGYMMACVADRIVAAPFSIIGSIGVVAQIPN 208 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L + + ++ + K + F E + + ++ ++ ++ F V + R P Sbjct: 209 FNRLLKRNDIDVELHTAGQYKRTLTLFGENTDEGREKFREDLNETHLLFKDFVHQMR--P 266 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +A ++GL+D +G + + S + + + Sbjct: 267 TLDVEKVATGEHWYGRQALELGLVDEIGTSDALIISQMERFTVLGV------HYARKRKM 320 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S S E I M Q + L Sbjct: 321 IDRMTHSASLAAERLILKMWQRGNKPLL 348 >gi|194444766|ref|YP_002040970.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403429|gb|ACF63651.1| putative signal peptide peptidase SppA, 36K type [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 348 Score = 82.4 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 16/250 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSAY 81 + P V I +G ++ + + + A++ L SPGG + Sbjct: 92 GDIATSDKPRVWVIDFKGSMDAHE--VNALREEVTAVLAVVKPGDRAVV-RLESPGGVVH 148 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +Q+++++ +T ++AAS GY+++C + I+AA ++VGSIGV+ Q P Sbjct: 149 GYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPN 208 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 FL + I+ + K + E + Q ++ ++ ++H F V R P Sbjct: 209 FNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMR--P 266 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +A + GL+D + +EV L + + K Sbjct: 267 ALDIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLMEGREVLN----VRYMQRKKLID 322 Query: 261 CDLKNLSISS 270 + + S+ Sbjct: 323 RVTGSAAESA 332 >gi|238894328|ref|YP_002919062.1| putative periplasmic protease [Klebsiella pneumoniae NTUH-K2044] gi|238546644|dbj|BAH62995.1| putative peptidase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 348 Score = 82.4 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 107/250 (42%), Gaps = 16/250 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 + + P + +G ++ +E+ + D +++ L SPGG + Sbjct: 92 GNAEPEGKPRAWVLDFKGSMDAHEVNSLREEITAVLAAAKARDQ---VVIRLESPGGVVH 148 Query: 82 AGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +Q++++++ +T V ++AAS GY+++C +N IV+A +++GSIGV+ Q P Sbjct: 149 GYGLAASQLQRLRDKQIPLTVAVDKVAASGGYMMACVANKIVSAPFAILGSIGVVAQIPN 208 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + FL + I+ + K + E + + ++ ++ ++H F V R P Sbjct: 209 LHRFLKNKDIDIELHTAGQYKRTLTMLGENTEEGRRKFREDLNETHHLFKDFV--HRMRP 266 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +A + GL+D V +E+ L + K Sbjct: 267 GLDIEQVATGEHWYGVQALEKGLVDAVETSDELLLGLIESHEVIG----VRYQQRKKMLD 322 Query: 261 CDLKNLSISS 270 + + S+ Sbjct: 323 RFTGSAAESA 332 >gi|2499884|sp|Q48513|PFAP_LEPBO RecName: Full=Putative peptidase pfaP; AltName: Full=PF-associated peptidase; AltName: Full=Periplasmic flagella-associated protein; Flags: Precursor gi|440320|gb|AAA79884.1| hypothetical peptidase [Leptospira borgpetersenii] Length = 204 Score = 82.4 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 92/180 (51%), Gaps = 3/180 (1%) Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 +++ + ++ + +MAAS GY I+ +++ I A ++ GSIGVL Q+ + LGV Sbjct: 1 MRLRKTRKIVVSMKDMAASGGYYIASSADKIFALSGTITGSIGVL-QWLRYQRAFGSLGV 59 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 +++ K K S F + P+ +M+Q ++ +Y+ FV+ V++ RN L++G Sbjct: 60 KMRTYKEGKYKDSLSLFRDSTPEEDEMIQKMLSDTYNEFVQDVAKGRNQTVKSVQNLAEG 119 Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270 RI++G +A + L+D +GG++E + L L + + ++ + L Sbjct: 120 RIYSGQDAFRNKLVDEIGGRKEALEELSRLCQYDGEIPL--YEEEESPFDRLFMMLGSKM 177 >gi|77919415|ref|YP_357230.1| periplasmic serine proteases [Pelobacter carbinolicus DSM 2380] gi|77545498|gb|ABA89060.1| protein C, Serine peptidase, MEROPS family S49 [Pelobacter carbinolicus DSM 2380] Length = 383 Score = 82.4 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 14/209 (6%) Query: 36 PHVARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 A I I+G + + L + DD+ +I + SPGG Sbjct: 62 NGTAIIGIQGTLVHKSGYLDALSGLSSYESLRSSFDLALEDDAVRRIIFDVDSPGGEVTG 121 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + I + + +KP+ V+E SA Y ++ A++ I+ T GSIGV+ + Sbjct: 122 CFDLADHIYQSRGKKPITAVVNESCYSAAYALASAADKIILPRTGGAGSIGVILAHVDQS 181 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 F +K G+++ + + KA+ SP ++ +A +Q +V+ +Y FV VS +RN+ + Sbjct: 182 GFNEKNGLAVTHIFAGAHKADFSPHHALSEEAKTRLQGMVNETYSLFVSTVSRNRNMSAE 241 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 ++ I+ G++A GL D V + Sbjct: 242 AVRK-TEACIYIGSKAVAAGLADQVAAVD 269 >gi|237808143|ref|YP_002892583.1| putative periplasmic protease [Tolumonas auensis DSM 9187] gi|237500404|gb|ACQ92997.1| Peptidase S49 domain protein [Tolumonas auensis DSM 9187] Length = 339 Score = 82.4 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 113/255 (44%), Gaps = 18/255 (7%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYA 82 + E + I +G ++ + E+ + DD +++ + S GG + Sbjct: 85 NAAESTKSRLFLIDFKGGMDAREVSSLREEITAVLTMAKSDDE---VLIRVESGGGVVHG 141 Query: 83 GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +Q+++++ + + ++AAS GY+++C + I+AA ++VGSIGV+ Q P Sbjct: 142 YGLGASQLQRIRDQGLYLTVSIDKVAASGGYMMACVAQKIIAAPFAIVGSIGVVAQLPNF 201 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K V ++ + K + F E + KA + + +++ + F + VSE R P Sbjct: 202 NRLLKKHDVDVELHTAGQFKRTLTIFGENDDKAREKFKAELETVHQQFKQFVSEHR--PR 259 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W AEAKK+GL+D + ++ S + +++ Sbjct: 260 MDMEQIATGEHWLAAEAKKLGLVDELRTSDDYLLSQFEQ------KQVIKVTYHNKKGLA 313 Query: 262 DLKNLSISSLLEDTI 276 D + + S +E + Sbjct: 314 DRFSHAASLAVERAV 328 >gi|224011339|ref|XP_002295444.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|209583475|gb|ACI64161.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 384 Score = 82.4 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 56/272 (20%), Positives = 105/272 (38%), Gaps = 20/272 (7%) Query: 35 SPHVARIAIRGQIEDSQELI--ERIERI--SRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 +A + I+D+ + E + +++ L SPGG+ + Sbjct: 87 KDIIATVDENAPIDDATTSLSTEELRDKPQYATPKVEVIVL-LESPGGAVSNYGLASSHL 145 Query: 91 QKVKNR---KPVITEVHEMAASAGYLISCASN-IIVAAETSLVGSIGVLFQYPYVKPFLD 146 Q++++ K I A+ + +S + A ++VGSIGV+ Q V+ L+ Sbjct: 146 QRLRSTPGVKLTICVDTVAASGGYMMACMSSPGQLYCAPFAMVGSIGVIGQSLNVQKTLE 205 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 K GV + MK EV + + MQD+VD + F V+ +R + Sbjct: 206 KYGVRPYVFRGGTMKNPVGMVGEVTKEGIGHMQDMVDRIHDAFREHVANARENSHH--DG 263 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF------ 260 +S G ++ G +A K+GL+D + +E + ++ I + P F Sbjct: 264 ISTGDVFIGMQALKLGLVDRLITSDEYIAERIQD-GSRVLKLIVNQRPLGLSSFFMGHPP 322 Query: 261 -CDLKNLSISSLLEDTIPLMKQTKVQGLWAVW 291 +S + + D + + L A W Sbjct: 323 PRRAPGMSSGNGMLDILKKIVLRSTHSLMA-W 353 >gi|283785434|ref|YP_003365299.1| protease [Citrobacter rodentium ICC168] gi|282948888|emb|CBG88490.1| probable protease [Citrobacter rodentium ICC168] Length = 348 Score = 82.4 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 116/267 (43%), Gaps = 16/267 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYA 82 + + ++P V + +G ++ + + + ++ ++V L SPGG + Sbjct: 92 AENSATDTPRVWVLDFKGSMDAHE--VNALREEVTAVLAVVKPQDQVVVRLESPGGVVHG 149 Query: 83 GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +Q+++++ +T V ++AAS GY+++C ++ IV+A +++GSIGV+ Q P Sbjct: 150 YGLAASQLQRLRDKNIPLTVAVDKVAASGGYMMACVADKIVSAPFAIIGSIGVVAQIPNF 209 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 FL + I+ + K + E + Q ++ ++ ++ F V R P Sbjct: 210 NRFLKGKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHQLFKAFV--HRMRPK 267 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 V++ G W G +A + GLID + +EV +L R++ + + Sbjct: 268 LDIEVVATGEHWYGQQALEKGLIDEINTSDEVILNLM------DGREVLNVRYLQRKKLM 321 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S + + + Q + L Sbjct: 322 DRFTGSAAESADRLLLRWWQRGQKPLM 348 >gi|157412171|ref|YP_001481512.1| hypothetical protein APECO1_O1R156 [Escherichia coli APEC O1] gi|99867196|gb|ABF67841.1| conserved hypothetical protein [Escherichia coli APEC O1] Length = 393 Score = 82.4 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 68/367 (18%), Positives = 124/367 (33%), Gaps = 80/367 (21%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSS------HVEDNSPHVARIAIRGQIEDSQE----- 52 + + T V +SL+ +T V FS+ + E H+A I I G++ E Sbjct: 27 MFRIHTTAKVAMSLIAMTAVGFSFYNLYEQWQDAEGKKDHIAVIRISGEMGTGSETGDGT 86 Query: 53 -LIERIERISRDDSATA------------------------------------------- 68 + + + + A A Sbjct: 87 VIATALAKAYNNPHAKAVIIEAESGGGGPSDAIIIYRQINALKNHQPQIERVSDAGCSLS 146 Query: 69 -LIVSLSSPGGSAYAGEAIF---RAIQKVKNR------------KPVITEVHEMAASAGY 112 + S+ GS G+ +++ + + KP+I V + ASA Y Sbjct: 147 SVAADKSNKTGSTERGDEARSKQNSLEVLSSGTGRFFSDIADSYKPIIVSVKGICASACY 206 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 ++ I A +L+GSIGV + + + +GV + + + K PF ++ Sbjct: 207 YAVSPADAIYADSNALIGSIGVRMDHWNLSEIMSTVGVKNEPLTAGEFKDALDPFHPLSD 266 Query: 173 KAVQMMQDVV-DSSYHWFVRLVSESRNIPY-----DKTLVLSDGRIWTGAEAKKVGLIDV 226 + MQ + ++ + F+ V R + L GR+W +A K GL+D Sbjct: 267 STREFMQKEILNTMHEKFITDVELGRGKKLLSRHDADAVSLYSGRVWPTPQAVKYGLVDG 326 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 E+ L + S K++N P L L S +++ V+ Sbjct: 327 DLTSVEIRTRLSKM---YSTDTFKNYNEPHRNLRSALGMLMSLSSNIESLTGTTTRLVES 383 Query: 287 LWAVWNP 293 + A P Sbjct: 384 VNATSYP 390 >gi|260174732|ref|ZP_05761144.1| putative proteinase [Bacteroides sp. D2] gi|315922992|ref|ZP_07919232.1| protease [Bacteroides sp. D2] gi|313696867|gb|EFS33702.1| protease [Bacteroides sp. D2] Length = 288 Score = 82.4 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 81/228 (35%), Gaps = 6/228 (2%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 + VA I + G + + +++ IS + ++ ++ PGG + Sbjct: 63 DDDTLPADSVAVIILEGTLYSWETYRLEQQLRDISGNPKICGAVLWINGPGGMVAHVDLA 122 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF--QYPYVKPF 144 + I + + KP+ T V SA + + A+ A + + + F Sbjct: 123 AKMIAE--SSKPIATYVAGTMGSAHFWLGTAAGRTFIASPMCEVGSVGIMLTYQSFKEYF 180 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + + S + + ++ + + F +S + I YD Sbjct: 181 RKQGIDYREIYPDSADLKNYETRAIEKDNNEEPIKQRLVVMHRIFCDAISRNLGIAYDPE 240 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 L L G+I+TG A G ID G E+ + + A + + ++ + Sbjct: 241 LPLFRGQIFTGDVAVANGYIDQFGTLEDAVKWVLAQATVRKVNEMYNI 288 >gi|148652799|ref|YP_001279892.1| putative periplasmic protease [Psychrobacter sp. PRwf-1] gi|148571883|gb|ABQ93942.1| peptidase S49 [Psychrobacter sp. PRwf-1] Length = 332 Score = 82.0 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 107/267 (40%), Gaps = 12/267 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAY 81 S + V + G I+ S +E+ I ++ D +++ L S GG + Sbjct: 56 KSKAKAKQKRVFVLDFDGDIKASAVKHLREEISTIISGANKGDE---VVIRLESGGGMVH 112 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + + ++K+ + V ++AAS GY+++C ++ I+AA +++GSIGV+ Q P Sbjct: 113 SYGLAAAQLVRLKDAGLTLTIAVDKIAASGGYMMACVADKILAAPFAVIGSIGVVSQMPN 172 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 +L K + + + K + F E + + ++ ++ F V+ R P Sbjct: 173 FNKWLKKHDIDYEMFTAGEYKRTVTVFGENDDDDRAKYTEELEQTHQLFKHFVTTYR--P 230 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 +++G W G +A + L+D + + +I + + F Sbjct: 231 QLDLTKVANGDHWYGEDALHLNLVDELTTSDAYLLKQMDEHQVYAILSRQKPTLAEKLGF 290 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + ++S L+ L Sbjct: 291 ANAAHSAVSGLVSTATKSALTVLGDKL 317 >gi|297734122|emb|CBI15369.3| unnamed protein product [Vitis vinifera] Length = 302 Score = 82.0 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 37/247 (14%), Positives = 88/247 (35%), Gaps = 15/247 (6%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-----------QELIERIERISRDD 64 +V L ++ V S V + +RGQI D ++ E + + D Sbjct: 7 FVVKLRMLIAFPWERVRKGS--VFTMKLRGQISDQLKSRFSSGLSLPQICENFIKAAYDP 64 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 + + + + E I R I K I Y + A + + A Sbjct: 65 RISGIYLHIEPLSCGWGKVEEIRRHILDFKKSGKFIVAYAPACGEKEYYLGSACDELYAP 124 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSEVNPKAVQMMQDVV 182 ++ G+ Q ++ +K+G+ + + K+ + ++ + +M+ ++ Sbjct: 125 PSAYFSLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 184 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 D+ Y ++ +S ++ + T + ++ + K+ G I + +EV L Sbjct: 185 DNIYGNWLDKISSAKGKKREDTENFINEGVYQVEKLKEEGWITNINYDDEVISILKERLG 244 Query: 243 DQSIRKI 249 + + Sbjct: 245 QPKDKNL 251 >gi|322833314|ref|YP_004213341.1| Peptidase S49 domain protein [Rahnella sp. Y9602] gi|321168515|gb|ADW74214.1| Peptidase S49 domain protein [Rahnella sp. Y9602] Length = 347 Score = 82.0 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 49/271 (18%), Positives = 113/271 (41%), Gaps = 18/271 (6%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGG 78 + + P + + +G ++ +E+ + + +D +++ L SPGG Sbjct: 88 LQAKTGSSKSKPCLYVLDFKGSMDAHEVTSLREEISAVLAVATPEDE---VLLRLESPGG 144 Query: 79 SAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 + + +++ +T V ++AAS GY+++C ++ IVAA +++GSIGV+ Q Sbjct: 145 VVHGYGLAASQLVRLRQSGIRLTVAVDKVAASGGYMMACVADRIVAAPFAIIGSIGVVAQ 204 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P L + + I+ + K + E + + ++ ++ ++ F V ++R Sbjct: 205 IPNFNRLLKRNDIDIELHTAGEFKRTLTLLGENTEEGREKFREDLNETHVLFKEFVHQNR 264 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 P ++ G W G +A++ GLID +G +++ + + ++ + Sbjct: 265 --PSLDIDAVATGEHWFGTQARENGLIDAIGTSDDLL--IAEM----KNHEVIAVRYSRR 316 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S + + Q + L Sbjct: 317 KRMMDRFTGSAAESADRLFLRWLQRSQKPLL 347 >gi|213618610|ref|ZP_03372436.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 203 Score = 82.0 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 4/175 (2%) Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 Y IS +N IVA+ ++L GSIG+ V+ L +GV V +SP+ S ++ Sbjct: 4 YWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLAD-ISMTKALS 62 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 P+ QMMQ ++ Y F+ LV+++R ++ ++ G +WTG +AK GL+D +G + Sbjct: 63 PEVQQMMQLSIEYGYKRFITLVADARKRTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFD 122 Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS--SLLEDTIPLMKQTKV 284 + L + + + +++ S ++L + I M + Sbjct: 123 DAVAKAAELAKL-KQWHLDYYQDEPTVLDMVMDSMTGSVRAMLPEAIQAMLPAPL 176 >gi|193064873|ref|ZP_03045950.1| putative peptidase, S49 (protease IV) family [Escherichia coli E22] gi|192927558|gb|EDV82175.1| putative peptidase, S49 (protease IV) family [Escherichia coli E22] Length = 288 Score = 82.0 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 87/218 (39%), Gaps = 14/218 (6%) Query: 38 VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 VA I I G + + + D + + + + SPGG Sbjct: 71 VAVIPICGTLVQKLGSLRPYSGMTGYDGIRQAFLTAMEDPDISGICLDIDSPGGEVAGCF 130 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + I + +KP+ + E A SA Y I+ A++ I T VGS+GV+ + Sbjct: 131 DLVDVIYGSRGKKPIHAILTESAYSAAYAIASAADRISVPRTGGVGSVGVITMHLDWTQR 190 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + G+ + + KAE SP E++ +A+ +Q +++ FV V+ +R I Sbjct: 191 IKDDGLKVTIITYGSRKAEGSPLRELSDEALAAIQQDINTMGELFVNTVARNRGISAKVI 250 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + A+ ++GL D V + +++L Sbjct: 251 KSTQAAC-FMAADGVEIGLADEVCPPDAAFKNLLEKTG 287 >gi|254786154|ref|YP_003073583.1| periplasmic protease [Teredinibacter turnerae T7901] gi|237686261|gb|ACR13525.1| putative protease SohB [Teredinibacter turnerae T7901] Length = 353 Score = 82.0 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 101/251 (40%), Gaps = 12/251 (4%) Query: 35 SPHVARIAIRGQIEDSQ-----ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 V G I S+ E+I I ++ ++V L S GG ++ Sbjct: 103 KKRVFVTNFDGDIRASETENLREVITSILSLAT--PQDEVVVRLESQGGMVHSYGFAASQ 160 Query: 90 IQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 + +++ + +T +AAS GY+++C ++ IV+A +++GSIGV+ Q P L K Sbjct: 161 LSRIREKNIPLTVCVDMVAASGGYMMACVADKIVSAPFAILGSIGVVAQLPNFHRLLKKH 220 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 V + + + K + F E K Q + ++ ++ F + +R ++ Sbjct: 221 DVDYEMLTAGEYKRTLTMFGENTDKGRQKFVEDLEDTHTLFKDFIRSNR--AIVDVDAVA 278 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 G +W G A + L+D + ++ LY+ I ++ + Sbjct: 279 TGEVWFGQRALEAKLVDCIQTSDQYLVDLYSEADVFEIEFVE--KKKLAEKLGISVAAAA 336 Query: 269 SSLLEDTIPLM 279 +++ + + Sbjct: 337 DTVINRWLGQL 347 >gi|163796778|ref|ZP_02190736.1| Periplasmic serine protease [alpha proteobacterium BAL199] gi|159178032|gb|EDP62579.1| Periplasmic serine protease [alpha proteobacterium BAL199] Length = 425 Score = 82.0 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 97/260 (37%), Gaps = 16/260 (6%) Query: 35 SPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 P +A + + G + ++ +++E + +++ L +PGG A Sbjct: 55 EPGIAVVPVLGTLVRRSSYLAAASGLTAYADIGDKVEAVLSSADVRGVLLELDTPGGEAG 114 Query: 82 AGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + + +++ + KP+ E A SAGY I+ + I T+ VGSIGV+ + Sbjct: 115 GVFDLADRLSELQRASGKPIWAIADEAALSAGYAIASVAEQIWLTRTAEVGSIGVVAVHV 174 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + G++ V + K + SP ++ A +Q VD+ FV LV+ +R I Sbjct: 175 DQSAADRQAGLAYSFVHAGAHKIDGSPHLPLSDSARARIQADVDALNDAFVDLVARNRGI 234 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 + + G A GL D +G + V + + + K Sbjct: 235 TAIVIRQT-EAATFRGERAVAAGLADRIGNFDAVLTAFAERLGRPRSIAARAFPHVKETP 293 Query: 260 FCDLKNLSISSLLEDTIPLM 279 + + P M Sbjct: 294 MKTGLPEQPPAGADALEPAM 313 >gi|206578027|ref|YP_002238995.1| peptidase, S49 (protease IV) family [Klebsiella pneumoniae 342] gi|290512950|ref|ZP_06552314.1| serine protease SohB [Klebsiella sp. 1_1_55] gi|206567085|gb|ACI08861.1| peptidase, S49 (protease IV) family [Klebsiella pneumoniae 342] gi|289774563|gb|EFD82567.1| serine protease SohB [Klebsiella sp. 1_1_55] Length = 348 Score = 82.0 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 107/250 (42%), Gaps = 16/250 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 + + P + +G ++ +E+ + D +++ L SPGG + Sbjct: 92 GNVEPEGKPRAWVLDFKGSMDAHEVNSLREEITAVLAAAKARDQ---VVIRLESPGGVVH 148 Query: 82 AGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +Q++++++ +T V ++AAS GY+++C +N IV+A +++GSIGV+ Q P Sbjct: 149 GYGLAASQLQRLRDKQIPLTVAVDKVAASGGYMMACVANKIVSAPFAILGSIGVVAQIPN 208 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + FL + I+ + K + E + + ++ ++ ++H F V R P Sbjct: 209 LHRFLKNKDIDIELHTAGQYKRTLTMLGENTEEGRRKFREDLNETHHLFKDFV--HRMRP 266 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G +A + GL+D V +E+ L + K Sbjct: 267 GLDIEQVATGEHWYGVQALEKGLVDAVETSDELLLGLMESHEVIG----VRYQQRKKMLD 322 Query: 261 CDLKNLSISS 270 + + S+ Sbjct: 323 RFTGSAAESA 332 >gi|90412193|ref|ZP_01220199.1| putative sohB protein, peptidase U7 family protein [Photobacterium profundum 3TCK] gi|90326917|gb|EAS43302.1| putative sohB protein, peptidase U7 family protein [Photobacterium profundum 3TCK] Length = 353 Score = 82.0 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 96/240 (40%), Gaps = 14/240 (5%) Query: 40 RIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 I G I+ + E+ I D +++ L + GG + + ++ Sbjct: 109 VIDFHGSIDAREVSSLREEVSAIIAVAIEGDE---VLLRLETGGGMVHGYGLASSQLDRL 165 Query: 94 KNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 K+ V ++AAS GY+++C ++ I++A ++VGSIGV+ Q P L K + Sbjct: 166 KSAGIKLTISVDKVAASGGYMMACVADKIISAPFAIVGSIGVIAQLPNFSKVLKKNDIEF 225 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 + + + K + F E KA Q ++ ++ F ++ R P ++ G Sbjct: 226 EQITAGEFKRTLTMFGENTDKARDKFQVEIEETHGLFKDFIAIHR--PELDLEKVATGEH 283 Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 W G +A +GL+D +G + ++R + + +LL Sbjct: 284 WFGNQALNLGLVDEIGTSDNFITHACKDREVLNVRFV--QRKKLAEKLAGATGEAADNLL 341 >gi|38348035|ref|NP_941284.1| putative peptidase [Serratia marcescens] gi|190410362|ref|YP_001965865.1| putative peptidase [Klebsiella pneumoniae] gi|226807771|ref|YP_002791467.1| hypothetical protein pEC-IMP_205 [Enterobacter cloacae] gi|226810085|ref|YP_002791780.1| hypothetical protein pEC-IMPQ_212 [Enterobacter cloacae] gi|38259512|emb|CAE51740.1| putative peptidase [Serratia marcescens] gi|146151156|gb|ABQ02922.1| putative peptidase [Klebsiella pneumoniae] gi|226425998|gb|ACO54091.1| conserved hypothetical protein [Enterobacter cloacae] gi|226426312|gb|ACO54404.1| conserved hypothetical protein [Enterobacter cloacae] Length = 393 Score = 82.0 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 68/367 (18%), Positives = 124/367 (33%), Gaps = 80/367 (21%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSS------HVEDNSPHVARIAIRGQIEDSQE----- 52 + + T V +SL+ +T V FS+ + E H+A I I G++ E Sbjct: 27 MFRIHTTAKVAMSLIAMTAVGFSFYNLYEQWQDAEGKKDHIAVIRISGEMGTGSETGDGT 86 Query: 53 -LIERIERISRDDSATA------------------------------------------- 68 + + + + A A Sbjct: 87 VIATALAKAYNNPHAKAVIIEAESGGGGPSDAIIIYRQINALKNHQPQIERVSDAGGSLS 146 Query: 69 -LIVSLSSPGGSAYAGEAIF---RAIQKVKNR------------KPVITEVHEMAASAGY 112 + S+ GS G+ +++ + + KP+I V + ASA Y Sbjct: 147 SVAADKSNKTGSTERGDEARSKQNSLEVLSSGTGRFFSDIADSYKPIIVSVKGICASACY 206 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 ++ I A +L+GSIGV + + + +GV + + + K PF ++ Sbjct: 207 YAVSPADAIYADSNALIGSIGVRMDHWNLSEIMSTVGVKNEPLTAGEFKDALDPFHPLSD 266 Query: 173 KAVQMMQDVV-DSSYHWFVRLVSESRNIPY-----DKTLVLSDGRIWTGAEAKKVGLIDV 226 + MQ + ++ + F+ V R + L GR+W +A K GL+D Sbjct: 267 STREFMQKEILNTMHEKFITDVELGRGKKLLSRHDADAVSLYSGRVWPTPQAVKYGLVDG 326 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 E+ L + S K++N P L L S +++ V+ Sbjct: 327 DLTSVEIRTRLSKM---YSTDTFKNYNEPHRNLRSALGMLMSLSSNIESLTGTTTRLVES 383 Query: 287 LWAVWNP 293 + A P Sbjct: 384 VNATSYP 390 >gi|226330245|ref|ZP_03805763.1| hypothetical protein PROPEN_04158 [Proteus penneri ATCC 35198] gi|225201040|gb|EEG83394.1| hypothetical protein PROPEN_04158 [Proteus penneri ATCC 35198] Length = 286 Score = 82.0 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 102/238 (42%), Gaps = 15/238 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGS 79 + P + + G ++ +E+ + +D +++ L SPGG Sbjct: 28 AKEGKKGVVKPCLYVLDFNGSMDAHEVGALREEISAILSVAQANDE---VLLRLESPGGM 84 Query: 80 AYAGEAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + + ++K + +T V ++AAS GY+++C ++ IVAA +++GSIGV+ Q Sbjct: 85 VHGYGLAAAQLTRLKEKGIKLTAVVDKVAASGGYMMACVADKIVAAPFAIIGSIGVVAQI 144 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P + L K + ++ + K + E + + + ++ ++ F V + R Sbjct: 145 PNIHRLLKKNDIDVELHTAGEYKRTLTLLGENTEEGREKFKQDLNETHLLFKSFVHKYR- 203 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 P ++ G W G+EA GLID VG ++ L D + ++ K Sbjct: 204 -PQLDIDSVATGEYWYGSEALNRGLIDEVGVSDD---WLINHINDFEVLSVQYVTKKK 257 >gi|37526334|ref|NP_929678.1| putative periplasmic protease [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785765|emb|CAE14813.1| Possible protease sohB [Photorhabdus luminescens subsp. laumondii TTO1] Length = 348 Score = 81.6 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 109/245 (44%), Gaps = 6/245 (2%) Query: 26 SWSSHVEDNSPHVARIAIRGQIE--DSQELIERIERISRDDSATA-LIVSLSSPGGSAYA 82 + + H P + + +G ++ + L E I I A +++ L SPGG + Sbjct: 90 AKTGHKGLQKPCLYVLDFKGSMDAHEVDSLREEISAILAVADAKDEVLLRLESPGGMVHG 149 Query: 83 GEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + +++ + V ++AAS GY+++C ++ +VAA +++GSIGV+ Q P + Sbjct: 150 YGLAASQLARLRQKGIRLTIVVDKVAASGGYMMACVADRVVAAPFAIIGSIGVVAQIPNI 209 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + ++ + K + E + + Q+ ++ ++ F + R P Sbjct: 210 HKLLKKNDIDVELHTAGEYKRTLTVLGENTEQGRKKFQEDLNQTHELFKSFIHTHR--PS 267 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G++AK+ GLID +G +++ + + + + + Sbjct: 268 LDVESVATGEYWYGSQAKEKGLIDEIGVSDDLLIAQIDNCEVIGVSYTRRKRMVERFTGN 327 Query: 262 DLKNL 266 ++++ Sbjct: 328 AMESI 332 >gi|330946542|gb|EGH47564.1| peptidase S49, SppA [Pseudomonas syringae pv. pisi str. 1704B] Length = 195 Score = 81.6 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 8/147 (5%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61 K V + V + S H A I ++G I D ++ ++ +++ Sbjct: 49 FFKLLTFAFLFVAVIVPMLDFEGGTSRRSSHTALIDVQGVIADKEAASAENIVTALQKAF 108 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118 D+ +I+ ++SPGGS ++ I++++ KP I + AS Y I+ A+ Sbjct: 109 EDEKTKGVILRINSPGGSPVQSGYVYDEIRRLRATKPDIKVYAVITDLGASGAYYIASAA 168 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFL 145 + I A + SLVGSIGV L Sbjct: 169 DQIYADKASLVGSIGVTAAGFGFVGSL 195 >gi|225155745|ref|ZP_03724233.1| Periplasmic serine protease (ClpP class)-like protein [Opitutaceae bacterium TAV2] gi|224803539|gb|EEG21774.1| Periplasmic serine protease (ClpP class)-like protein [Opitutaceae bacterium TAV2] Length = 282 Score = 81.6 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 94/218 (43%), Gaps = 18/218 (8%) Query: 38 VARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 +A I + G I ++++ I + ++++++SPGG+ Sbjct: 63 IAEIPVFGPIGKGLGSFEKSCGATSTEDVANDITEALGRRDVSGILLNINSPGGTTTGVP 122 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + AI + KPV+ + ASA Y + +++IVA++++ VGS+GV + Sbjct: 123 ELASAIARAAENKPVVAFTDSLMASAAYWLGSQADMIVASKSASVGSVGVYIPFLDSSRR 182 Query: 145 LDKLGVSIKSVKS--SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 + +G+ + VK+ +K P + + + +Q D + F + R D Sbjct: 183 AEMMGLKVDVVKNKEGTLKGMGIPGTSLTEAQREHLQQRADEIFSMFKGDIKSRRPGVKD 242 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 + G+ A +++ GLID +G + SL AL Sbjct: 243 EA---LRGQTLLAAGSRETGLIDDIGDIQHARASLAAL 277 >gi|167034552|ref|YP_001669783.1| putative periplasmic protease [Pseudomonas putida GB-1] gi|166861040|gb|ABY99447.1| Peptidase S49 domain protein [Pseudomonas putida GB-1] Length = 339 Score = 81.6 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 107/266 (40%), Gaps = 20/266 (7%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAGE 84 ++ V + G I+ S + L I + + +++ L S GG ++ Sbjct: 84 KKGKAEDKGRVFVLDFDGDIKASATESLRNEITALLTLATPRDEVVLRLESGGGLVHSYG 143 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + +++ +T ++AAS GY+++C IV+A +++GSIGV+ Q P V Sbjct: 144 LAASQLARIRQAGIPLTVCIDKVAASGGYMMACIGEKIVSAPFAVLGSIGVVAQLPNVNR 203 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K + + + + K + F E K + Q+ +D ++ F V+ R P Sbjct: 204 LLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLDITHQLFKDFVARYR--PQLH 261 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G +W G A L+D + +E + + K+ Sbjct: 262 IDEVATGEVWLGVAALNRKLVDELQTSDEYLSERARNANLFHLH----YAERKSLQERI- 316 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289 ++ S +E+T+ GLW+ Sbjct: 317 -GMAASGTVENTL--------VGLWS 333 >gi|255021016|ref|ZP_05293069.1| Peptidase S49-like protein [Acidithiobacillus caldus ATCC 51756] gi|254969430|gb|EET26939.1| Peptidase S49-like protein [Acidithiobacillus caldus ATCC 51756] Length = 331 Score = 81.6 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 10/221 (4%) Query: 29 SHVEDNSPHVARIAIRG-----QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 + +G + +E + I +R +++ L S GG A Sbjct: 80 DEAAQVGDCTFVLDFKGDLRASAVASLREEVSAILAAAR--PGDRVLLRLESGGGMVNAY 137 Query: 84 EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + +++ + + V ++AAS GYL++ ++ IVA+ +LVGSIGV+ Q P Sbjct: 138 GLAAAQLLRLRAAQLHLTVLVDQVAASGGYLMAVTAHEIVASPFALVGSIGVVAQIPNFN 197 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 +L + + + + K + F E Q +++ ++ + F V+E R P Sbjct: 198 RWLRERHIDFEQFTAGKYKRTVTLFGENTDAGRQKLREELEDIHAMFRHFVAEYR--PSL 255 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 ++ G W G A+++GL+D + + V Q G Sbjct: 256 DLEQVATGEAWLGIRAQELGLVDRLATSDTVIQEAADRGRV 296 >gi|52628202|gb|AAU26943.1| signal peptide peptidase SppA (protease IV) [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 326 Score = 81.2 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 102/232 (43%), Gaps = 16/232 (6%) Query: 36 PHVARIAIRGQIEDSQELIERIERISRD-----DSATALIVSLSSPGGSAYAGEAIFRAI 90 P + I G I+ +Q +E++ ++V L SPGG+ + Sbjct: 90 PVLYVIDFSGDIKATQ--VEQLRDEVTSVLSIAKPEDEVLVRLESPGGAVNGYGLAASQL 147 Query: 91 QKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 Q+++++K + +MAAS GYL++C +N I+AA +++GSIGV+ Q P +L K Sbjct: 148 QRIRDKKIPLTVSIDKMAASGGYLMACVANKIIAAPFAIIGSIGVVAQIPNFHRWLKKNN 207 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + ++ + + K + F+E K + Q+ ++ + F V ++R ++ Sbjct: 208 IDVELLTAGEYKRTLTLFAENTEKGRKKFQEDLEKIHTAFREYVLKNR--SQLDIDKVAT 265 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQS------LYALGVDQSIRKIKDWNPP 255 G W +A + L+D + +E + L V + I P Sbjct: 266 GEHWIAKDAFDLRLVDKLATSDEYLIEKMAEFNAFKLTVLAKLPIISKVLKP 317 >gi|71065564|ref|YP_264291.1| serine peptidase [Psychrobacter arcticus 273-4] gi|71038549|gb|AAZ18857.1| protein C. Serine peptidase. MEROPS family S49 [Psychrobacter arcticus 273-4] Length = 402 Score = 81.2 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 111/268 (41%), Gaps = 22/268 (8%) Query: 17 LVTLTVVYFSWSSHVEDNSP------HVARIAIRGQ-------------IEDSQELIERI 57 L ++ S + N P VA I +RG + L + I Sbjct: 27 LASIDFKALSRYGDDDVNEPAYTVENGVATIDVRGLLVPETSSDYRSWGVTGYANLADYI 86 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 ++ + D + T++++ + S GG + I I ++ KP+ T V A SA Y ++ + Sbjct: 87 QQANDDYAVTSIVLDIDSGGGYVAGLDGITETI--YQSAKPIETFVSGDAYSAAYWLAAS 144 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 ++ I A++ S +GSIGV + L+ G+ IK +S K + F+ ++ + Sbjct: 145 TSKITASKKSGIGSIGVYGDHAEKSKALEDAGIKIKRFRSGRWKGAFNWFTPLSAEEETR 204 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 +QD ++ S F V+ RNI +G ++ A+AK++GLID + V S Sbjct: 205 LQDGINESASIFFNYVAAQRNIDVKTIQG-WEGDDFSAAKAKELGLIDAIADSVAVSSST 263 Query: 238 YALGVDQSIRKIKDWNPPKNYWFCDLKN 265 + + + + + Sbjct: 264 KQSNNNPEEYDLNELEKAQAEIAALKAD 291 >gi|54296876|ref|YP_123245.1| putative periplasmic protease [Legionella pneumophila str. Paris] gi|229270458|ref|YP_094890.2| putative periplasmic protease [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53750661|emb|CAH12068.1| hypothetical protein lpp0917 [Legionella pneumophila str. Paris] Length = 312 Score = 81.2 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 102/232 (43%), Gaps = 16/232 (6%) Query: 36 PHVARIAIRGQIEDSQELIERIERISRD-----DSATALIVSLSSPGGSAYAGEAIFRAI 90 P + I G I+ +Q +E++ ++V L SPGG+ + Sbjct: 76 PVLYVIDFSGDIKATQ--VEQLRDEVTSVLSIAKPEDEVLVRLESPGGAVNGYGLAASQL 133 Query: 91 QKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 Q+++++K + +MAAS GYL++C +N I+AA +++GSIGV+ Q P +L K Sbjct: 134 QRIRDKKIPLTVSIDKMAASGGYLMACVANKIIAAPFAIIGSIGVVAQIPNFHRWLKKNN 193 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + ++ + + K + F+E K + Q+ ++ + F V ++R ++ Sbjct: 194 IDVELLTAGEYKRTLTLFAENTEKGRKKFQEDLEKIHTAFREYVLKNR--SQLDIDKVAT 251 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQS------LYALGVDQSIRKIKDWNPP 255 G W +A + L+D + +E + L V + I P Sbjct: 252 GEHWIAKDAFDLRLVDKLATSDEYLIEKMAEFNAFKLTVLAKLPIISKVLKP 303 >gi|220920634|ref|YP_002495935.1| peptidase S49 [Methylobacterium nodulans ORS 2060] gi|219945240|gb|ACL55632.1| peptidase S49 [Methylobacterium nodulans ORS 2060] Length = 420 Score = 81.2 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 86/229 (37%), Gaps = 14/229 (6%) Query: 38 VARIAIRGQ------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 V +I ++G + + ER D + + SPGG Sbjct: 71 VLQIPVKGVLLHDFSFAVGSLVTGYVYIRRAFERGMADPEVRGIALICDSPGGEVAGNFD 130 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + + + KPV HE A SA Y I+ A++ I+ + T VGSIGV+ + L Sbjct: 131 LVDVLYAARGAKPVRAFAHEGAYSAAYSIASAADRIIVSRTGGVGSIGVVTAHIDASGAL 190 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 + G+ + + + K + + + P+ +Q +D Y FV V+ +R++ Sbjct: 191 AQAGLKVTFIFAGEHKVDGNSAEPLPPEVKDRIQARIDGLYDIFVAAVARNRSLKETAVR 250 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS-LYALGVDQSIRKIKDWN 253 + EA + GL D VG ++ + L + Sbjct: 251 ATK-ALTYAADEAIRTGLADAVGALDDAVAAFAAELTPTAEDPSMITPE 298 >gi|145629712|ref|ZP_01785508.1| protease IV [Haemophilus influenzae 22.1-21] gi|144978049|gb|EDJ87828.1| protease IV [Haemophilus influenzae 22.1-21] Length = 304 Score = 81.2 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 57/290 (19%), Positives = 112/290 (38%), Gaps = 40/290 (13%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52 ++ + V L V L V S+SS + + S + + G + D+++ Sbjct: 14 FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTALTSEGALLLNLDGYLADNRDETLRWQD 73 Query: 53 ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93 ++ I++ D L++ L+ G A + I AI Sbjct: 74 ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHF 133 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 K+ + + + Y ++ ++ I V G+ + Y K LDKL V+ Sbjct: 134 KDAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL------ 205 + K+ PF ++++ +A MQ + ++ +V VSE+RNI D L Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDNVLPNAKQY 253 Query: 206 --VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 L + + A A++ GL+ V + ++ + L AL + K + + Sbjct: 254 LSDLKALKGNSTAYAQQRGLVTDVVTRLDLDKKLTALFWQRKRWKSEPYR 303 >gi|82701192|ref|YP_410758.1| peptidase S49 [Nitrosospira multiformis ATCC 25196] gi|82409257|gb|ABB73366.1| protein C, Serine peptidase, MEROPS family S49 [Nitrosospira multiformis ATCC 25196] Length = 321 Score = 81.2 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 93/226 (41%), Gaps = 16/226 (7%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIE-------------DSQELIERIERISRDDSATAL 69 + F S + VA I I G I D + + + + D S + Sbjct: 33 LKFPASQRKSVSQDGVAVIDITGPITPRASFLSLLFGGTDVETIQQDLSAALADSSVNKI 92 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 ++++ SPGG + I ++ KP+ + V M ASA Y ++ A++ I ++T+LV Sbjct: 93 VLNIDSPGGVVSGVSPLADQIFSARSIKPIESFVSGMGASAAYWLAAATSHITISDTALV 152 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ K GV + SS + P+ +Q++Q +DS F Sbjct: 153 GSIGVVGTAIDDKARQQMQGVIFHQIVSSNAPKKRP--DPATPEGLQVLQKEIDSLASVF 210 Query: 190 VRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 V+ R + K G + G EA + GL D +G E Sbjct: 211 TAKVARYRGVNEMKVNSDFGQGGVLVGVEAVRAGLADAIGTFESTL 256 >gi|291617611|ref|YP_003520353.1| SohB [Pantoea ananatis LMG 20103] gi|291152641|gb|ADD77225.1| SohB [Pantoea ananatis LMG 20103] Length = 348 Score = 81.2 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 102/229 (44%), Gaps = 10/229 (4%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYAG 83 +E P + + G I+ S+ ++ + ++ +++ L SPGG + Sbjct: 93 GSLETARPTLYVLDFNGSIDASE--VKSLREEVSAVLAVAQPGDEVLLRLESPGGMVHGY 150 Query: 84 EAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 +Q++++ + V ++AAS GY+++C ++ IVAA +++GSIGV+ Q P Sbjct: 151 GLAASQLQRLRDAGLTLTAAVDKVAASGGYMMACVASQIVAAPFAVIGSIGVVAQIPNFN 210 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + + ++ + K + F E + + Q ++ ++ F + V E R P Sbjct: 211 RLLKRNDIDVELHTAGQYKRTLTLFGENTEEGREKFQQDLNETHLLFKQFVHEMR--PSL 268 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 ++ G W G +A +GLID + +++ + ++ Sbjct: 269 DIDRVATGEHWYGRQALTLGLIDRISTSDDLIIQHMDKFTVLGVNYVRR 317 >gi|83593390|ref|YP_427142.1| peptidase S49 [Rhodospirillum rubrum ATCC 11170] gi|83576304|gb|ABC22855.1| Peptidase S49 [Rhodospirillum rubrum ATCC 11170] Length = 264 Score = 81.2 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 63/254 (24%), Positives = 100/254 (39%), Gaps = 21/254 (8%) Query: 44 RGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ--KVKN 95 G I L I+R R AL++ +SPGGS + I I+ + Sbjct: 17 SGVIAARDRALSLAALKPLIDRAFRVGDEVALVI--NSPGGSPAQSQLIHDYIRIQADRR 74 Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 +K VIT V ++AAS GY I+ A + I TSLVGSIGV+ LD+LGV + V Sbjct: 75 KKAVITFVEDVAASGGYWIALAGDSIRVLPTSLVGSIGVVSAGFGFVEALDRLGVERRLV 134 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR---NIPYDKTLVLSDGRI 212 + K PFS + + + + + F+ V R + L G + Sbjct: 135 AAGRNKVRLDPFSPRKDEDTEWLTGLQAQLHERFIEHVRSRRAAQGTRLPEGGELFTGEV 194 Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 W G EA L D + VD+ ++++ P + + L + L Sbjct: 195 WLGREAIAHRLADQ--------EDSLGAYVDREKIRLREIAPRRMFSLRGLIGGLAAETL 246 Query: 273 EDTIPLMKQTKVQG 286 ++ ++ Sbjct: 247 GALEARIEDRALRA 260 >gi|327394039|dbj|BAK11461.1| predicted protease SohB [Pantoea ananatis AJ13355] Length = 348 Score = 81.2 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 102/229 (44%), Gaps = 10/229 (4%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYAG 83 +E P + + G I+ S+ ++ + ++ +++ L SPGG + Sbjct: 93 GSLETARPTLYVLDFNGSIDASE--VKSLREEVSAVLAVAQPGDEVLLRLESPGGMVHGY 150 Query: 84 EAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 +Q++++ + V ++AAS GY+++C ++ IVAA +++GSIGV+ Q P Sbjct: 151 GLAASQLQRLRDAGLTLTAAVDKVAASGGYMMACVASQIVAAPFAVIGSIGVVAQIPNFN 210 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + + ++ + K + F E + + Q ++ ++ F + V E R P Sbjct: 211 RLLKRNDIDVELHTAGQYKRTLTLFGENTEEGREKFQQDLNETHLLFKQFVHEMR--PSL 268 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 ++ G W G +A +GLID + +++ + ++ Sbjct: 269 DIDRVATGEHWYGRQALTLGLIDRISTSDDLIIQHMDKFTVLGVNYVRR 317 >gi|77164361|ref|YP_342886.1| putative periplasmic protease [Nitrosococcus oceani ATCC 19707] gi|254433532|ref|ZP_05047040.1| peptidase family S49 N-terminal domain protein [Nitrosococcus oceani AFC27] gi|76882675|gb|ABA57356.1| inner membrane peptidase, Serine peptidase, MEROPS family S49 [Nitrosococcus oceani ATCC 19707] gi|207089865|gb|EDZ67136.1| peptidase family S49 N-terminal domain protein [Nitrosococcus oceani AFC27] Length = 325 Score = 80.8 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 104/251 (41%), Gaps = 16/251 (6%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSA 80 + + + V + G I + +E+ + + +D +++ L S GG Sbjct: 77 AHKNKQKYTKRVFVLDFHGDIRATAVASLREEITAVLSVATPEDE---ILLRLESGGGLV 133 Query: 81 YAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + +++++ ++ I V ++AAS GY+++C N I+AA +++GSIG L Q P Sbjct: 134 HEYGLAASQLERIRKKQIPLIIAVDKIAASGGYMMACVGNRIIAAPFAIIGSIGALMQVP 193 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 LDK G+ + +K+ +K + F + ++ + V+ + F V+ R Sbjct: 194 NFHRLLDKHGIDFEQIKAGELKRTVTLFGINTDQDRELAKKQVEDIHQLFKEFVARYR-- 251 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 P + G+ W +AKK+ LID + ++ + K + Sbjct: 252 PDMDLSQTATGQHWHAIQAKKLNLIDDLETSDDYLAEACKTANLYK----VTYTVKKTFA 307 Query: 260 FCDLKNLSISS 270 L +S Sbjct: 308 ERFLARTQAAS 318 >gi|284007501|emb|CBA72986.1| probable protease [Arsenophonus nasoniae] Length = 348 Score = 80.8 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 105/244 (43%), Gaps = 14/244 (5%) Query: 29 SHVEDNSPHVARIAIRG-----QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 P + I +G ++ +E I I I+ + +++ L SPGG + Sbjct: 93 GQTTLKKPCLFVIDFKGSMNALEVNALREEITAILSIADNKD--EVLLRLESPGGVVHGY 150 Query: 84 EAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + +++ + +I V ++AAS GY+++C ++ IVAA +++GSIGV+ Q P Sbjct: 151 GLAASQLNRLREKGLKLIVSVDKVAASGGYMMACVADHIVAAPFAIIGSIGVVAQVPNFH 210 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L K + ++ + K + E + + ++ ++ F V + R P Sbjct: 211 RLLKKKDIDVELHTAGEYKRTLTLLGENTEQGRKKFVQDLNEAHQLFKDFVHQKR--PAL 268 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 ++ G W G +AK+ GLID +G +++ + + P K + Sbjct: 269 DINAVATGEHWYGVQAKEKGLIDEIGVSDDIIINQIE----AREIIAVTYTPAKRFVDRL 324 Query: 263 LKNL 266 + ++ Sbjct: 325 MGSM 328 >gi|119469274|ref|ZP_01612213.1| predicted inner membrane peptidase [Alteromonadales bacterium TW-7] gi|119447138|gb|EAW28407.1| predicted inner membrane peptidase [Alteromonadales bacterium TW-7] Length = 313 Score = 80.8 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 53/214 (24%), Positives = 100/214 (46%), Gaps = 7/214 (3%) Query: 28 SSHVEDNSPHVARIAIRGQIE--DSQELIERIERISR--DDSATALIVSLSSPGGSAYAG 83 S E + P + + G ++ + + L E I I D +++ L S GG + Sbjct: 56 KSDKEGSKPRLYVVDFIGSMDAHEVESLREEITAIISIADPKKDKVLIRLESGGGVVHGY 115 Query: 84 EAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 +Q++K+ ++ + ++AAS GY+++C ++ I+AA ++VGSIGV+ Q P Sbjct: 116 GLAASQLQRIKSAGIPLSVSIDKVAASGGYMMACVADEILAAPFAIVGSIGVIAQIPNFN 175 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L K V + + + K + F E KA + +D ++ ++ F VS R P Sbjct: 176 KILKKNDVEFEQITAGEFKRTLTLFGENTDKAREKFRDEIEQTHDLFKTFVSSQR--PSL 233 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 ++ G W +A + GL+DV+ ++ Sbjct: 234 NIDQVATGEHWFATQAIEKGLVDVIKTSDDALLE 267 >gi|225630471|ref|YP_002727262.1| minor capsid protein C, putative [Wolbachia sp. wRi] gi|225592452|gb|ACN95471.1| minor capsid protein C, putative [Wolbachia sp. wRi] Length = 345 Score = 80.8 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 89/181 (49%), Gaps = 1/181 (0%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 + +++ E IER D S +++ + SPGG + I + + +K +I ++ Sbjct: 64 MTSYEKIHEEIERALEDKSIETILLDIDSPGGEVNGVFDLADFIYESRAKKRIIAIANDD 123 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 A SA Y I+ ++ I TS VGSIGV+ + F +K G+ +V + K + +P Sbjct: 124 AYSAAYAIASSAEKIFLTRTSGVGSIGVIASHIDQSGFDEKQGIKYTTVFAGSRKNDLNP 183 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 + ++++ ++ V+ Y V L++ +R++ + G + G +A ++GL D Sbjct: 184 HEPITSESLENLKSEVNRLYGMLVELIARNRSLSVEAIKNTEAGLYF-GEKAIEMGLADG 242 Query: 227 V 227 + Sbjct: 243 M 243 >gi|221134638|ref|ZP_03560941.1| putative periplasmic protease [Glaciecola sp. HTCC2999] Length = 371 Score = 80.8 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 46/216 (21%), Positives = 95/216 (43%), Gaps = 12/216 (5%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGS 79 S S P + I G ++ +E+ + D ++V++ S GG Sbjct: 113 SSGSVESAQKPRLFVIDFNGSVDAHEVDNFREEITAVLLAAKSSDE---VLVNVESGGGV 169 Query: 80 AYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + ++++K + + V ++AAS GY+++C ++ +V A +++GSIGV+ Q Sbjct: 170 VHGYGLAASQLERIKAKGLKLTICVDKVAASGGYMMACVADKLVCANFAIIGSIGVIAQM 229 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 P L K + + + K + F E N + + ++ + F V+ +R Sbjct: 230 PNFNKLLKKNDIEFEQHTAGDFKRTLTVFGENNDEGRAKFKAELEEVHVMFKDFVTRNR- 288 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 P ++ G W G +A ++GL+D + ++V Sbjct: 289 -PTLDISKVATGEYWFGMQALELGLVDELSTSDDVL 323 >gi|296106434|ref|YP_003618134.1| Periplasmic protease [Legionella pneumophila 2300/99 Alcoy] gi|295648335|gb|ADG24182.1| Periplasmic protease [Legionella pneumophila 2300/99 Alcoy] Length = 311 Score = 80.8 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 99/211 (46%), Gaps = 11/211 (5%) Query: 36 PHVARIAIRGQIEDSQELIERIERISRD-----DSATALIVSLSSPGGSAYAGEAIFRAI 90 P + I G I+ +Q +E++ ++V L SPGG+ + Sbjct: 75 PVLYVIDFSGDIKATQ--VEQLRDEVTSVLSIAKPEDEVLVRLESPGGAVNGYGLAASQL 132 Query: 91 QKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 Q+++++K + +MAAS GYL++C +N I+AA +++GSIGV+ Q P +L K Sbjct: 133 QRIRDKKIPLTVSIDKMAASGGYLMACVANKIIAAPFAIIGSIGVVAQIPNFHRWLKKNN 192 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + ++ + + K + F+E K + Q+ ++ + F V ++R ++ Sbjct: 193 IDVELLTAGEYKRTLTLFAENTEKGRKKFQEDLEKIHTAFREYVLKNR--SQLDIDKVAT 250 Query: 210 GRIWTGAEAKKVGLIDVVGGQEE-VWQSLYA 239 G W +A + L+D + +E + + + Sbjct: 251 GEHWIAKDAFDLRLVDKLATSDEYLIEKMAE 281 >gi|148360499|ref|YP_001251706.1| signal peptide peptidase SppA [Legionella pneumophila str. Corby] gi|148282272|gb|ABQ56360.1| signal peptide peptidase SppA (protease IV) [Legionella pneumophila str. Corby] Length = 311 Score = 80.8 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 99/211 (46%), Gaps = 11/211 (5%) Query: 36 PHVARIAIRGQIEDSQELIERIERISRD-----DSATALIVSLSSPGGSAYAGEAIFRAI 90 P + I G I+ +Q +E++ ++V L SPGG+ + Sbjct: 75 PVLYVIDFSGDIKATQ--VEQLRDEVTSVLSIAKPEDEVLVRLESPGGAVNGYGLAASQL 132 Query: 91 QKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 Q+++++K + +MAAS GYL++C +N I+AA +++GSIGV+ Q P +L K Sbjct: 133 QRIRDKKIPLTVSIDKMAASGGYLMACVANKIIAAPFAIIGSIGVVAQIPNFHRWLKKNN 192 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + ++ + + K + F+E K + Q+ ++ + F V ++R ++ Sbjct: 193 IDVELLTAGEYKRTLTLFAENTEKGRKKFQEDLEKIHTAFREYVLKNR--SQLDIDKVAT 250 Query: 210 GRIWTGAEAKKVGLIDVVGGQEE-VWQSLYA 239 G W +A + L+D + +E + + + Sbjct: 251 GEHWIAKDAFDLRLVDKLATSDEYLIEKMAE 281 >gi|330828722|ref|YP_004391674.1| putative protease sohB [Aeromonas veronii B565] gi|328803858|gb|AEB49057.1| Probable protease sohB [Aeromonas veronii B565] Length = 335 Score = 80.8 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 54/259 (20%), Positives = 108/259 (41%), Gaps = 14/259 (5%) Query: 30 HVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSA----TALIVSLSSPGGSAYAGEA 85 D + + G D++E+ E +S +++ L S GG + Sbjct: 83 KAGDERSRLFVLDFNGS-MDAKEVASLREEVSAVIGVAQPGDEVLLRLESGGGVVHGYGL 141 Query: 86 IFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 +Q++++R +T + ++AAS GY+++C ++ I+AA ++VGSIGV+ Q P Sbjct: 142 AASQLQRLRDRDIKLTVAIDKVAASGGYMMACVADKILAAPFAIVGSIGVIAQLPNFNKL 201 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K + + + K + F E + + ++ + + + F V+E R P Sbjct: 202 LKKHDIEFEMHTAGQYKRTITMFGENDDLGREKFREELAAIHERFKAFVAEHR--PQLDI 259 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 ++ G W ++AK +GL+D + ++ L S K+ + K Sbjct: 260 DQVTTGEHWLASQAKGLGLVDTLCTSDDY------LLAQASHHKVIGISYRKPKSLTQKL 313 Query: 265 NLSISSLLEDTIPLMKQTK 283 + LE + + Q Sbjct: 314 GQQGAQALEAGLGRLWQQS 332 >gi|54293830|ref|YP_126245.1| putative periplasmic protease [Legionella pneumophila str. Lens] gi|53753662|emb|CAH15120.1| hypothetical protein lpl0886 [Legionella pneumophila str. Lens] Length = 312 Score = 80.4 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 99/211 (46%), Gaps = 11/211 (5%) Query: 36 PHVARIAIRGQIEDSQELIERIERISRD-----DSATALIVSLSSPGGSAYAGEAIFRAI 90 P + I G I+ +Q +E++ ++V L SPGG+ + Sbjct: 76 PVLYVIDFSGDIKATQ--VEQLRDEVTSVLSIAKPEDEVLVRLESPGGAVNGYGLAASQL 133 Query: 91 QKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 Q+++++K + +MAAS GYL++C +N I+AA +++GSIGV+ Q P +L K Sbjct: 134 QRIRDKKIPLTVSIDKMAASGGYLMACVANKIIAAPFAIIGSIGVVAQIPNFHRWLKKNN 193 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + ++ + + K + F+E K + Q+ ++ + F V ++R ++ Sbjct: 194 IDVELLTAGEYKRTLTLFAENTEKGRKKFQEDLEKIHTAFREYVLKNR--SQLDIDKVAT 251 Query: 210 GRIWTGAEAKKVGLIDVVGGQEE-VWQSLYA 239 G W +A + L+D + +E + + + Sbjct: 252 GEHWIAKDAFDLRLVDKLATSDEYLIEKMAE 282 >gi|26990627|ref|NP_746052.1| putative periplasmic protease [Pseudomonas putida KT2440] gi|24985612|gb|AAN69516.1|AE016585_8 sohB protein, peptidase U7 family [Pseudomonas putida KT2440] Length = 339 Score = 80.4 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 56/266 (21%), Positives = 107/266 (40%), Gaps = 20/266 (7%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAGE 84 ++ V + G I+ S + L I + +A +++ L S GG ++ Sbjct: 84 KKGKAEDKSRVFVLDFDGDIKASATESLRNEITALLTLATARDEVVLRLESGGGLVHSYG 143 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + +++ +T ++AAS GY+++C IV+A +++GSIGV+ Q P V Sbjct: 144 LAASQLARIRQAGIPLTVCIDKVAASGGYMMACIGEKIVSAPFAVLGSIGVVAQLPNVNR 203 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K + + + + K + F E K + Q+ +D ++ F VS R P Sbjct: 204 LLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKYQEDLDITHQLFKDFVSRYR--PQLH 261 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G +W G A L+D + +E + + K+ Sbjct: 262 IDEVATGEVWLGVAALNRKLVDELQTSDEYLSERARNANLFHLH----YAERKSLQERI- 316 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289 ++ S +E+ V GLW+ Sbjct: 317 -GMAASGTVENA--------VVGLWS 333 >gi|328849884|gb|EGF99057.1| putative protease IV sppA [Melampsora larici-populina 98AG31] Length = 842 Score = 80.4 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 52/189 (27%), Positives = 99/189 (52%), Gaps = 9/189 (4%) Query: 37 HVARIAIRGQIEDSQE-----LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 +V + + G I D E +++ ++ + DDS A+++ + S GG + I+ A++ Sbjct: 396 NVGVVYVLGTIGDVGEFGTGAIVKGLKEAAEDDSIGAVVLRIDSGGGGVVESDTIWGAVK 455 Query: 92 KVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP-FLDKLG 149 ++++R KPVI AAS GYLI+ ++ I A +++ GSIGV P + P F ++L Sbjct: 456 ELRSRGKPVIASFGNAAASGGYLIATHADSIFAMPSTITGSIGVASLRPTIMPSFFERLK 515 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 ++ +S + + E+ +A+ + +D +Y F V + R I + L+ Sbjct: 516 LTTQSFFTGSQALSI--YHELGDEAMSRHKTHIDLAYADFKGRVCDGRQISTELIEKLAG 573 Query: 210 GRIWTGAEA 218 GR++TG +A Sbjct: 574 GRVYTGLKA 582 >gi|224535172|ref|ZP_03675711.1| hypothetical protein BACCELL_00033 [Bacteroides cellulosilyticus DSM 14838] gi|224523222|gb|EEF92327.1| hypothetical protein BACCELL_00033 [Bacteroides cellulosilyticus DSM 14838] Length = 292 Score = 80.4 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 92/226 (40%), Gaps = 6/226 (2%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL-IER-IERISRDDSATALIVSLSSPGGSAYAGEAI 86 V + G + + +E+ I + + +++ ++ PGG + + Sbjct: 69 EDASLPENSVVILTCDGVLYSWETYRLEQFIAKALANPKIAGIVLFVNGPGGMITRVDLL 128 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYVKPFL 145 R I++ + KP+ + + ASA + A V++ +GS G+++ Y K + Sbjct: 129 ERMIRE--SSKPIAAYITGVCASAHFWFVSACGRKFVSSPMDEIGSCGIIYTYQSFKKYY 186 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM-MQDVVDSSYHWFVRLVSESRNIPYDKT 204 ++LGV +K + + ++ K +++ + ++ F + V+ + I YD+ Sbjct: 187 EELGVELKDIYPDSADLKNKMIRDMEEKQDDSLIKEKLSFYHNLFAQAVARNLGIKYDRN 246 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 L G+ + A G +D G E+ + + + +I Sbjct: 247 DPLFRGQTYFADVALANGYVDAYGTLEDAIVWVLSQATLKRANEII 292 >gi|148547143|ref|YP_001267245.1| putative periplasmic protease [Pseudomonas putida F1] gi|148511201|gb|ABQ78061.1| Peptidase S49, N-terminal domain protein [Pseudomonas putida F1] Length = 339 Score = 80.4 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 56/266 (21%), Positives = 107/266 (40%), Gaps = 20/266 (7%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAGE 84 ++ V + G I+ S + L I + +A +++ L S GG ++ Sbjct: 84 KKGKAEDKSRVFVLDFDGDIKASATESLRNEITALLTLATARDEVVLRLESGGGLVHSYG 143 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + +++ +T ++AAS GY+++C IV+A +++GSIGV+ Q P V Sbjct: 144 LAASQLARIRQAGIPLTVCIDKVAASGGYMMACIGEKIVSAPFAVLGSIGVVAQLPNVNR 203 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K + + + + K + F E K + Q+ +D ++ F VS R P Sbjct: 204 LLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLDITHQLFKDFVSRYR--PQLH 261 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G +W G A L+D + +E + + K+ Sbjct: 262 IDEVATGEVWLGVAALNRKLVDELQTSDEYLSERARNANLFHLH----YAERKSLQERI- 316 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289 ++ S +E+ V GLW+ Sbjct: 317 -GMAASGTVENA--------VVGLWS 333 >gi|58698702|ref|ZP_00373591.1| hypothetical protein WwAna1181 [Wolbachia endosymbiont of Drosophila ananassae] gi|58534788|gb|EAL58898.1| hypothetical protein WwAna1181 [Wolbachia endosymbiont of Drosophila ananassae] Length = 345 Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 89/181 (49%), Gaps = 1/181 (0%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 + +++ E IER D S +++ + SPGG + I + + +K +I ++ Sbjct: 64 MTSYEKIHEEIERALEDKSIETILLDIDSPGGEVNGVFDLADFIYESRAKKRIIAIANDD 123 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 A SA Y I+ ++ I TS VGSIG++ + F +K G+ +V + K + +P Sbjct: 124 AYSAAYAIASSAEKIFLTRTSGVGSIGIIASHIDQSGFDEKQGIKYTTVFAGSRKNDLNP 183 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 + ++++ ++ V+ Y V L++ +R++ + G + G +A ++GL D Sbjct: 184 HEPITSESLENLKSEVNRLYGMLVELIARNRSLSVEAIKNTEAGLYF-GEKAIEMGLADG 242 Query: 227 V 227 + Sbjct: 243 M 243 >gi|330994906|ref|ZP_08318828.1| Head-tail preconnector protein GP5 [Gluconacetobacter sp. SXCC-1] gi|329758167|gb|EGG74689.1| Head-tail preconnector protein GP5 [Gluconacetobacter sp. SXCC-1] Length = 275 Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 50/215 (23%), Positives = 98/215 (45%), Gaps = 14/215 (6%) Query: 38 VARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 VA I + G + + ++ ++ + S A ++ + SPGG+ Sbjct: 59 VAIIPVSGVLLPGESPGWWWSGATFYEDINVAFQQAIDEPSIKATVLLVDSPGGTVAGCF 118 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + I + + KP++ V+E A SA Y ++ +++ I+ T VGSIGV+ + + Sbjct: 119 DLADRIYEGRGAKPIVAIVNESAYSAAYALASSADTIIVPRTGGVGSIGVVGMHVDITGA 178 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L++ G+ + + + K + P + ++ +A + Q +D+ FV V+ +R+IP D+ Sbjct: 179 LEQAGIKVTTFQFGDQKTDSYPTTTMSEEAAKRFQADIDAMGELFVATVARNRDIPADRV 238 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 G + G GL D V G E ++ L Sbjct: 239 RATQAGT-FLGQRGIDAGLADAVMGAEAAFRELLD 272 >gi|313498180|gb|ADR59546.1| Putative periplasmic protease [Pseudomonas putida BIRD-1] Length = 339 Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 56/266 (21%), Positives = 107/266 (40%), Gaps = 20/266 (7%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAGE 84 ++ V + G I+ S + L I + +A +++ L S GG ++ Sbjct: 84 KKGKAEDKSRVFVLDFDGDIKASATESLRNEITALLTLATARDEVVLRLESGGGLVHSYG 143 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + +++ +T ++AAS GY+++C IV+A +++GSIGV+ Q P V Sbjct: 144 LAASQLARIRQAGIPLTVCIDKVAASGGYMMACIGEKIVSAPFAVLGSIGVVAQLPNVNR 203 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K + + + + K + F E K + Q+ +D ++ F VS R P Sbjct: 204 LLKKHDIDFEVLTAGEYKRTLTIFGENTEKGREKFQEDLDITHQLFKDFVSRYR--PQLH 261 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G +W G A L+D + +E + + K+ Sbjct: 262 IDEVATGEVWLGVAALNRKLVDELQTSDEYLSERARNANLFHLH----YAERKSLQERI- 316 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289 ++ S +E+ V GLW+ Sbjct: 317 -GMAASGTVENA--------VVGLWS 333 >gi|222825130|dbj|BAH22287.1| putative minor capsid protein c [Wolbachia endosymbiont of Cadra cautella] Length = 335 Score = 80.0 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 101/229 (44%), Gaps = 15/229 (6%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQ-------------IEDSQELIERIE 58 + +LSL + F H NS I I G + +++ E IE Sbjct: 7 FELLSLQAGKQLIFKNIKHAVRNSER-GIIPIHGILTKKSETFDGLLGMTSYEKIHEEIE 65 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 D S +++ + SPGG + I + + +K +I ++ A SA Y I+ ++ Sbjct: 66 SALEDKSIETILLDIDSPGGEVNGVFDLADFIYESRAKKRIIAIANDDAYSAAYAIASSA 125 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 I TS VGSIGV+ + F +K G+ +V + K + +P + ++++ + Sbjct: 126 EKIFLTRTSGVGSIGVIASHIDQSGFDEKQGIKYTTVFAGSRKNDLNPHEPITSESLENL 185 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 + V+ Y V L++ +R++ + G + G +A ++GL D + Sbjct: 186 KSEVNRLYGMLVELIARNRSLSVEAIKNTEAGLYF-GEKAIEMGLADGM 233 >gi|296536846|ref|ZP_06898893.1| serine peptidase [Roseomonas cervicalis ATCC 49957] gi|296262817|gb|EFH09395.1| serine peptidase [Roseomonas cervicalis ATCC 49957] Length = 294 Score = 80.0 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 85/215 (39%), Gaps = 16/215 (7%) Query: 38 VARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 VA I + G + + + + D A A+++ L+S GG Sbjct: 74 VAVIQVEGMLVQKTGTLRPYSGMTGYDGIRQNLLTALADTQAEAIVLDLNSGGGEVSGCF 133 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + I + + KP+ + A SA Y ++ A + + T VGS+GV+ Sbjct: 134 DLADTITQARGIKPIWGICGDCAYSAAYALASACDRVTVPRTGGVGSVGVITMMVDYSKA 193 Query: 145 LDKLGVSIKSVKSSPMK--AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 + G+++ V K ++ + P+ +Q +Q V FV LV+++R + D Sbjct: 194 ITDEGLAVHFVHYGARKAEETRQMYTGIKPELLQRVQQDVTMMGDIFVNLVAQNRRMSAD 253 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 + + G GL D V +E +++L Sbjct: 254 AVKA-QEADYFLGERGVAAGLADAVMAPDEAFRAL 287 >gi|145642067|ref|ZP_01797638.1| protease IV [Haemophilus influenzae R3021] gi|145273247|gb|EDK13122.1| protease IV [Haemophilus influenzae 22.4-21] Length = 295 Score = 79.7 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 106/275 (38%), Gaps = 44/275 (16%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDN----SPHVARIAIRGQIEDSQE------- 52 ++ + V L V L V S+SS + + S + + G + D+++ Sbjct: 14 FIRDLVMNVVFLGFVLLLVAIISFSSGGKKSTALTSEGALLLNLDGYLADNRDETLRWQD 73 Query: 53 ------------------LIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKV 93 ++ I++ D L++ L+ G A + I AI + Sbjct: 74 ALSELNGEHVPRKISTFDVVFAIQQAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISQF 133 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 KN + + + Y ++ ++ I V G+ + Y K LDKL V+ Sbjct: 134 KNAGKPVIAYADNYSQGQYYLASFADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPH 193 Query: 154 SVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + K+ PF ++++ +A MQ + ++ +V VSE+RNI D+ L + + Sbjct: 194 IFRVGTYKSAVEPFLRNDMSAEAKANMQRWLGEMWNNYVLSVSENRNIKKDRI--LPNAK 251 Query: 212 IWTGA----------EAKKVGLIDVVGGQEEVWQS 236 + A++ GL+ V + ++ + Sbjct: 252 QYLAELKALKGNSTAYAQQRGLVTDVVTRLDLDKK 286 >gi|254884972|ref|ZP_05257682.1| protease [Bacteroides sp. 4_3_47FAA] gi|254837765|gb|EET18074.1| protease [Bacteroides sp. 4_3_47FAA] Length = 286 Score = 79.7 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 94/234 (40%), Gaps = 6/234 (2%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPG 77 L V S VA I + G + + E I + + +D +I+ ++ PG Sbjct: 54 LNFVGRWNLEDSGLPSDSVAVIVLEGTLYSWETFRLQEYIAQAAANDRIAGIILWINGPG 113 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA-AETSLVGSIGVLF 136 G + + I + KPV+ + ASA + ++ A++ + VGSIGV+ Sbjct: 114 GMITGLDNASKMISECP--KPVVAYIAGACASAHFWLASAADKRFLGSLMCEVGSIGVVG 171 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA-VQMMQDVVDSSYHWFVRLVSE 195 Y K L K G+ + + + E+ + ++ + + F R VSE Sbjct: 172 TYYNAKEALKKKGIDYREIYPDSADLKNREHREIAENNNEEPYKEKLSKLHMMFCRTVSE 231 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 + +I YDK + G + G EA + GL D E + + A V +I Sbjct: 232 NLSIAYDKDSPVFRGATFMGDEAVREGLADGYNTLEGAARWILAQSVINKTNQI 285 >gi|197285195|ref|YP_002151067.1| periplasmic protease [Proteus mirabilis HI4320] gi|227355620|ref|ZP_03840014.1| S49 family SohB endopeptidase [Proteus mirabilis ATCC 29906] gi|194682682|emb|CAR42830.1| probable protease [Proteus mirabilis HI4320] gi|227164227|gb|EEI49120.1| S49 family SohB endopeptidase [Proteus mirabilis ATCC 29906] Length = 348 Score = 79.7 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 54/235 (22%), Positives = 104/235 (44%), Gaps = 9/235 (3%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRDDSA-TALIVSLSSPGGSAYA 82 + P + I +G ++ + L E I I A +++ L SPGG + Sbjct: 90 AKEGRKGVVKPCLYVIDFKGSMDAHEVGALREEISAILSVAQAGDEVLLRLESPGGMVHG 149 Query: 83 GEAIFRAIQKVKNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++K++ +T V ++AAS GY+++C ++ IVAA +++GSIGV+ Q P + Sbjct: 150 YGLAAAQLTRLKDKGIKLTAVVDKVAASGGYMMACVADKIVAAPFAIIGSIGVVAQIPNI 209 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L K + ++ + K + E + + + ++ ++ F V + R P Sbjct: 210 HRLLKKNDIDVELHTAGEYKRTLTLLGENTDEGREKFKQDLNETHLLFKSFVHKYR--PE 267 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 ++ G W G +A GLID VG ++ L + D + ++ K Sbjct: 268 LDIDSVATGEYWYGTDAVDKGLIDEVGVSDD---WLISRINDFEVLSVQYILKKK 319 >gi|126642480|ref|YP_001085464.1| putative periplasmic protease [Acinetobacter baumannii ATCC 17978] Length = 226 Score = 79.7 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 9/218 (4%) Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLV 129 V L SPGG + + ++++ + V ++AAS GY+++C +N I++A ++V Sbjct: 2 VRLESPGGMVHGYGLAAAQLVRLRDAGFHLTICVDKVAASGGYMMACIANEIISAPFAVV 61 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GSIGV+ Q P L + V + + K + F E P+ ++ + ++ F Sbjct: 62 GSIGVVAQVPNFNRLLKEHNVDFELYTAGQYKRTVTMFGENTPEGKAKFEEELQQTHVLF 121 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 V + R P ++ G W G +A + L+D + +E +L + Sbjct: 122 KHFVEKYR--PQLNVDKVATGEHWYGQDALDLNLVDKLQTSDEYLLALL------PQHDV 173 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 N K + L + + + IP + L Sbjct: 174 YVINTRKKATLGEKLGLQAAQMADSLIPAVMNKVADTL 211 >gi|192359025|ref|YP_001982509.1| putative periplasmic protease [Cellvibrio japonicus Ueda107] gi|190685190|gb|ACE82868.1| possible protease SohB [Cellvibrio japonicus Ueda107] Length = 364 Score = 79.7 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 58/264 (21%), Positives = 102/264 (38%), Gaps = 30/264 (11%) Query: 35 SPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 V + G I+ S +E+ + ++V + S GG + Sbjct: 114 KKRVFVLDFYGDIKASACDNLREEITTVLSIA---KPTDEVVVKVESGGGMVHGYGLASS 170 Query: 89 AIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + ++ ++ +T ++AAS GY+++C +N IVAA ++VGSIGV+ Q P L K Sbjct: 171 QLARITHKHIPLTVCVDKVAASGGYMMACVANKIVAAPFAIVGSIGVIAQLPNFHKLLKK 230 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 + + + K + F E K + ++ ++ F V E R P + Sbjct: 231 NDIDFEMFTAGEFKRTVTMFGENTEKGRAKFVEELEDTHVLFKEFVGEHR--PQVDIAKV 288 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G +W G AK V LID + +E L + I ++ + Sbjct: 289 ATGEVWFGRRAKDVNLIDELQTSDE---YLLSQVDQADIYTVE---------------FT 330 Query: 268 ISSLLEDTIPLMKQTKVQGLWAVW 291 L + + L Q V L W Sbjct: 331 FKKTLPEKLGLAAQGAVDRLLMTW 354 >gi|77360288|ref|YP_339863.1| putative periplasmic protease [Pseudoalteromonas haloplanktis TAC125] gi|76875199|emb|CAI86420.1| protease (may metabolize cleaved signal peptides) [Pseudoalteromonas haloplanktis TAC125] Length = 339 Score = 79.3 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 58/253 (22%), Positives = 109/253 (43%), Gaps = 13/253 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIE--DSQELIERIERISR--DDSATALIVSLSSPGGSAYAG 83 + ++ P + + G ++ + + L E I I D S +++ L S GG + Sbjct: 82 KNDSKEPKPRLYVVDFIGSMDAHEVESLREEITAIISIADASKDKVLIRLESGGGVVHGY 141 Query: 84 EAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 +Q++KN ++ + ++AAS GY+++C ++ I+AA ++VGSIGV+ Q P Sbjct: 142 GLAASQLQRIKNAGIPLSVAIDKVAASGGYMMACVADEIIAAPFAIVGSIGVIAQIPNFN 201 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L K V + + + K + F E KA + ++ ++ ++ F VS R P Sbjct: 202 KILKKNDVEFEQITAGEFKRTLTLFGENTDKAREKFREEIEQTHGLFKTFVSTQR--PSL 259 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 ++ G W +A + GL+DV+ ++ Q +I D Sbjct: 260 DISSVATGEHWFATQAIEKGLVDVIKTSDDALLE------QQDECQIYKIKYKIKKGLSD 313 Query: 263 LKNLSISSLLEDT 275 L SS + Sbjct: 314 KLALGFSSAVNKA 326 >gi|59711647|ref|YP_204423.1| putative periplasmic protease [Vibrio fischeri ES114] gi|59479748|gb|AAW85535.1| predicted inner membrane peptidase [Vibrio fischeri ES114] Length = 353 Score = 79.3 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 103/252 (40%), Gaps = 10/252 (3%) Query: 35 SPHVARIAIRGQIEDSQELIERIERISRDDSA----TALIVSLSSPGGSAYAGEAIFRAI 90 + + G I D++E+ E +S + +++ L S GG + + Sbjct: 104 DARLFVLDFNGSI-DAKEVAALREEVSAILAVAIEGDEVLLRLESGGGMVHGYGLASSQL 162 Query: 91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++ + V ++AAS GY+++C I+AA ++VGSIGV+ Q P L K Sbjct: 163 DRLRDANIKLTISVDKVAASGGYMMACIGEKIIAAPFAIVGSIGVVAQLPNFNKLLKKND 222 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + + + + K + F E + KA + Q ++ ++ F + E R ++ Sbjct: 223 IEFEQLTAGEYKRTLTMFGENSDKAREKFQLELEETHVLFKDFIREHR--SELDLEKVAT 280 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 G W G +A ++GLID + ++ +I + + + S Sbjct: 281 GEHWFGKQALELGLIDEIQTSDDYLTKACKDREVLAIHYV--QKKKLSDKIAGIAGQSAE 338 Query: 270 SLLEDTIPLMKQ 281 ++ I ++ Sbjct: 339 NVFMRLISKGQR 350 >gi|160871575|ref|ZP_02061707.1| probable protease SohB [Rickettsiella grylli] gi|159120374|gb|EDP45712.1| probable protease SohB [Rickettsiella grylli] Length = 330 Score = 79.3 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 105/252 (41%), Gaps = 16/252 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 + V + +G I+ +E+ I+ + D +++ L S GG Sbjct: 82 KKNANQLKKKVFVLNFQGDIKAHAVNNLREEITALIQVATPQDE---VVLRLESAGGMVA 138 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +Q++KN+ +T ++AAS GYL++C ++ ++AA +++GSIGV+ Q P Sbjct: 139 PYGLAASQLQRLKNKHIPLTITIDKIAASGGYLMACVADKLLAAPFAIIGSIGVVAQLPN 198 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 FL K + + + + K + F E KA + Q ++ +H F + +R Sbjct: 199 FHRFLKKRDIDFELLTAGEYKRTLTLFGENTSKAREKTQADLEEIHHLFKSFIQSNRK-- 256 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W +A + L+D + ++ L + +I + + Sbjct: 257 KIDIHEVATGAHWLAKDALALHLVDALLTSDDYLNQLAE----EDTAEIYECHYQTKKSV 312 Query: 261 CDLKNLSISSLL 272 + + ++L Sbjct: 313 SEKLRGQLHAML 324 >gi|146174461|ref|XP_001019379.2| peptidase, S49 (protease IV) family protein [Tetrahymena thermophila] gi|146144797|gb|EAR99134.2| peptidase, S49 (protease IV) family protein [Tetrahymena thermophila SB210] Length = 255 Score = 79.3 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 58/220 (26%), Positives = 105/220 (47%), Gaps = 13/220 (5%) Query: 35 SPHVARIAIRGQIEDSQELIERIERISRDDSA---TALIVSLSSPGGSAYAGEAIFRAIQ 91 P V + I GQI + + +IE +E+ +D AL V ++SPGGS + + I Sbjct: 10 KPTVPVVTINGQITE-KSVIE-LEKNLKDIRVSTAKALAVVVNSPGGSPTQSKKMVDLIH 67 Query: 92 KVKNRKP--VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 + V T ++AASAG+ + + + + A + S +GSIG + + VK + G Sbjct: 68 NFAHDNHLTVYTFAEDLAASAGFQVLISGDKVFADQQSTLGSIGSITNFMNVKELILNQG 127 Query: 150 VSIKSVKSSPMK-AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-- 206 + I+SV ++P S F +V + + ++++ S + F+ LV E R Sbjct: 128 IEIRSVTTNPASVTNQSMFKDVPEELRHVYENMLQSQHKKFIDLVEEQRGSKIKVPKEKR 187 Query: 207 ---LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 L +G ++ G +A + GLID +G ++V + + Sbjct: 188 GSLLYNGDVFNGKQALEYGLIDSIGRVQDVMKEEFPKADV 227 >gi|320654748|gb|EFX22727.1| putative head protein/prohead protease [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 184 Score = 79.3 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 1/180 (0%) Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 + D +++ + SPGG A I +++ +KPV ++ A SA L++ A Sbjct: 1 QAMADSQVRGVLLDIDSPGGQAAGAFDCADMIYRLRQQKPVWALCNDTACSAAMLLASAC 60 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + + +TS +GSIGV+ + L + GV I + S K + + F + + Q M Sbjct: 61 SRRLVTQTSRIGSIGVMMSHVSYAGHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDM 120 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 Q +D++ F V+ + D ++ ++ G + GL D + + + Sbjct: 121 QQRIDAARRMFAEKVAMYTGLSVDAV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 179 >gi|152995733|ref|YP_001340568.1| putative periplasmic protease [Marinomonas sp. MWYL1] gi|150836657|gb|ABR70633.1| Peptidase S49 domain protein [Marinomonas sp. MWYL1] Length = 347 Score = 78.9 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 105/256 (41%), Gaps = 18/256 (7%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSA 80 E + + G I+ S +E+ + D ++V L S GG Sbjct: 89 PKETDEVVKKRLYVLDFDGDIKASAVETMRKEITAILSVAKPQDE---VVVRLESGGGVV 145 Query: 81 YAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + +Q+++ P+ V ++AAS GY+++C ++ I+AA +++GSIGV+ Q P Sbjct: 146 HGYGLAASQLQRIREANIPLTICVDKVAASGGYMMACVADKIIAAPFAILGSIGVVAQVP 205 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + LDK + ++ + K + E + + + ++ ++ F R VS R Sbjct: 206 NLHRLLDKSLIDVELHTAGKYKRTLTMLGENTDEGREKFKQDLEDTHGLFKRFVSSQR-- 263 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 P ++ G W G+EA + LIDVV + L ++ + Sbjct: 264 PQLDIEDIATGDTWYGSEAIENKLIDVVMTSD------AYLVSHYENAEVIQVTYKQPKG 317 Query: 260 FCDLKNLSISSLLEDT 275 + LS S LE Sbjct: 318 MAERLGLSFFSALEQK 333 >gi|295698501|ref|YP_003603156.1| probable protease SohB [Candidatus Riesia pediculicola USDA] gi|291157227|gb|ADD79672.1| probable protease SohB [Candidatus Riesia pediculicola USDA] Length = 326 Score = 78.9 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 95/209 (45%), Gaps = 6/209 (2%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAAS 109 +E+ + ++D +++ L S GG+ + ++K +K + +AAS Sbjct: 115 EEITAILSVADKNDE---VLLILESSGGTVNGYGLAAAQLMRLKEKKIKLTVSIDRVAAS 171 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 GY+++C +N I+AA S+VGSIGV+ Q P FL K + ++ + K + E Sbjct: 172 GGYMMACTANHIIAAPLSIVGSIGVVGQIPNFHRFLKKQDIDVELHTAGEYKRTLTLLGE 231 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 + +++++ F V ++R P ++S+G W G +AK+ GLID +G Sbjct: 232 NTESGRKKFIQDLNNTHLLFKAFVQKNR--PNLNIDLVSNGEYWYGIQAKENGLIDEIGT 289 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 + I+ I + K + Sbjct: 290 SDGYILKNIKEKEVIKIKYIINQGIFKKF 318 >gi|170722382|ref|YP_001750070.1| putative periplasmic protease [Pseudomonas putida W619] gi|169760385|gb|ACA73701.1| Peptidase S49 domain protein [Pseudomonas putida W619] Length = 339 Score = 78.9 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 104/266 (39%), Gaps = 20/266 (7%) Query: 28 SSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAGE 84 + V + G I+ S + L I + + +++ L S GG ++ Sbjct: 84 KKGKVEEKGRVFVLDFDGDIKASATESLRNEITALLTLATPRDEVVLRLESGGGLVHSYG 143 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + +++ +T ++AAS GY+++C IV+A +++GSIGV+ Q P V Sbjct: 144 LAASQLARIRQAGIPLTVCIDKVAASGGYMMACIGEKIVSAPFAVLGSIGVVAQLPNVNR 203 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K + + + + K + F E K + Q+ +D ++ F V+ R P Sbjct: 204 LLKKHNIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLDITHQLFKDFVARYR--PQLH 261 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G +W G A L+D + +E + K+ Sbjct: 262 IDEVATGEVWLGVAALNRKLVDQLQTSDEYLSERARNASLFH----VHYAERKSLQERI- 316 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWA 289 ++ S +E+ V GLW+ Sbjct: 317 -GMAASGAVENA--------VVGLWS 333 >gi|104781391|ref|YP_607889.1| putative periplasmic protease [Pseudomonas entomophila L48] gi|95110378|emb|CAK15086.1| putative peptidase, S49 family [Pseudomonas entomophila L48] Length = 338 Score = 78.9 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 104/257 (40%), Gaps = 20/257 (7%) Query: 37 HVARIAIRGQIEDS--QELIERIERISR-DDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 V + G I+ S + L I + +++ L S GG ++ + ++ Sbjct: 92 RVFVLDFDGDIKASATESLRNEITALLTLATPQDEVVLRLESGGGLVHSYGLAASQLARI 151 Query: 94 KNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 + + ++AAS GY+++C IV+A +++GSIGV+ Q P V L K + Sbjct: 152 REAGVPLTICIDKVAASGGYMMACIGEKIVSAPFAVLGSIGVVAQMPNVNRLLKKHDIDF 211 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 + + + K + F E K + Q+ +D ++ F V+ R P ++ G + Sbjct: 212 EVLTAGEYKRTLTVFGENTDKGREKFQEDLDITHQLFKDFVARYR--PQLHIDEVATGEV 269 Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 W G A L+D +G +E +R + + ++ S + Sbjct: 270 WLGIAALNRQLVDELGTSDEYLSQRAREANLFHLRF------AERKTLQERIGVAASGAV 323 Query: 273 EDTIPLMKQTKVQGLWA 289 E+T+ GLW+ Sbjct: 324 ENTL--------VGLWS 332 >gi|197335839|ref|YP_002155843.1| putative protease SohB [Vibrio fischeri MJ11] gi|197317329|gb|ACH66776.1| putative protease SohB [Vibrio fischeri MJ11] Length = 353 Score = 78.5 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 103/252 (40%), Gaps = 10/252 (3%) Query: 35 SPHVARIAIRGQIEDSQELIERIERISRDDSA----TALIVSLSSPGGSAYAGEAIFRAI 90 + + G I D++E+ E +S + +++ L S GG + + Sbjct: 104 DARLFVLDFNGSI-DAKEVAALREEVSAILAVAIEGDEVLLRLESGGGMVHGYGLASSQL 162 Query: 91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++ + V ++AAS GY+++C I+AA ++VGSIGV+ Q P L K Sbjct: 163 DRLRDANIKLTISVDKVAASGGYMMACIGEKIIAAPFAIVGSIGVVAQLPNFNKLLKKND 222 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + + + + K + F E + KA + Q ++ ++ F + E R ++ Sbjct: 223 IEFEQLTAGEYKRTLTMFGENSDKAREKFQLELEETHVLFKDFICEHR--SELDLEKVAT 280 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 G W G +A ++GLID + ++ +I + + + S Sbjct: 281 GEHWFGKQALELGLIDDIQTSDDYLTKACKDREVLAIHYV--QKKKLSDKIAGIAGQSAE 338 Query: 270 SLLEDTIPLMKQ 281 ++ I ++ Sbjct: 339 NVFMRLISKGQR 350 >gi|92114061|ref|YP_573989.1| putative periplasmic protease [Chromohalobacter salexigens DSM 3043] gi|91797151|gb|ABE59290.1| inner membrane peptidase, Serine peptidase, MEROPS family S49 [Chromohalobacter salexigens DSM 3043] Length = 349 Score = 78.5 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 56/272 (20%), Positives = 115/272 (42%), Gaps = 21/272 (7%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQ--ELIER----IERISRDDSATALIVSLSSPGGSAY 81 E P V + G ++ S+ +L E+ + + DD ++V L+S GG + Sbjct: 90 GEAQEAARPRVWVLDFDGDLKASRTPQLAEQVSLLLGELQDDDE---VVVRLTSGGGLVH 146 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 A + ++++ +T ++AAS GY+++C ++ ++AA +++GSIGV+ Q P Sbjct: 147 AYGLASAQLDRLRDAGVRLTVCVDKVAASGGYMMACCAHRLIAAPFAVIGSIGVVAQVPN 206 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 V L K + ++ + + K + E + + + ++ F R V E R P Sbjct: 207 VHRLLKKHDIDVELLTAGRYKRTLTVLGENTEEGRAKFLEDLRETHDLFKRYVGERR--P 264 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G IW G +A GLID V + + ++ P++ Sbjct: 265 ALDIEKVATGEIWYGRQALDDGLIDEVNTSDGYLAARMEQARV-----LQVVLEPRHSLM 319 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 + + + + +M++ + G W Sbjct: 320 QRIGVGASQGIERLSDRVMERLEESG----WQ 347 >gi|325272247|ref|ZP_08138665.1| putative inner membrane peptidase [Pseudomonas sp. TJI-51] gi|324102619|gb|EGC00048.1| putative inner membrane peptidase [Pseudomonas sp. TJI-51] Length = 341 Score = 78.5 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 108/262 (41%), Gaps = 20/262 (7%) Query: 32 EDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA-LIVSLSSPGGSAYAGEAIFR 88 D V + G I+ S + L I + +A +++ L S GG ++ Sbjct: 90 ADEQGRVFVLDFDGDIKASATESLRNEITALLTLATARDEVVLRLESGGGLVHSYGLAAS 149 Query: 89 AIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + +++ +T ++AAS GY+++C + IV+A +++GSIGV+ Q P V L K Sbjct: 150 QLARIRQAGIPLTVCIDKVAASGGYMMACIGDKIVSAPFAVLGSIGVVAQLPNVNRLLKK 209 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 + + + + K + F E K + Q+ +D ++ F V+ R P + Sbjct: 210 HDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLDITHQLFKDFVARYR--PQLHIDEV 267 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G +W G A L+D + +E + + K+ ++ Sbjct: 268 ATGEVWLGVAALNRQLVDTLQTSDEYLSERARNANLFHLH----YAERKSLQERI--GVA 321 Query: 268 ISSLLEDTIPLMKQTKVQGLWA 289 S +E+T+ GLW+ Sbjct: 322 ASGAVENTL--------VGLWS 335 >gi|254521421|ref|ZP_05133476.1| peptidase S49 [Stenotrophomonas sp. SKA14] gi|219719012|gb|EED37537.1| peptidase S49 [Stenotrophomonas sp. SKA14] Length = 434 Score = 78.5 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 92/228 (40%), Gaps = 14/228 (6%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATAL 69 V S V + I + G + + + + + + DD+ T++ Sbjct: 47 VSGSDGQPVGVAQNLIGVINLSGAMVNRPMPGASGPGPVSYAAVRDTFDELLNDDAVTSI 106 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 I+ L +PGG A + I + + RKP+ V + A SAG+ + A + I + T V Sbjct: 107 ILRLDTPGGMASGCFDLVDHIFEARGRKPLYALVDDHAYSAGFALGSACDEIWISRTGGV 166 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GS+GV+ + ++G+ + + + K + +P ++ +A ++ F Sbjct: 167 GSVGVVRFHQDWSGNNAQIGLKVTPLFAGARKVDFNPNFPLSEEAHAEAMADLEDMRTMF 226 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 V V+ + + + ++ + G A VG +G ++ L Sbjct: 227 VDTVARNLGMEAEAVRA-TEAACYRGQAAVAVGFATRLGTWHDLIAHL 273 >gi|330877855|gb|EGH12004.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. glycinea str. race 4] Length = 196 Score = 78.5 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 8/141 (5%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-----SQELIERIERIS 61 K V + V + S H A I ++G I D ++ ++ +++ Sbjct: 49 FFKLLTFAFLFVAVVVPMLDFEGGTSRRSSHTALIDVQGVIADKESASAENIVTALQKAF 108 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA---ASAGYLISCAS 118 D+ +I+ ++SPGGS ++ I++++ KP I + AS Y I+ A+ Sbjct: 109 EDEKTRGVILRINSPGGSPVQSGYVYDEIRRLRAAKPDIKVYAVITDLGASGAYYIASAA 168 Query: 119 NIIVAAETSLVGSIGVLFQYP 139 + I A + SLVGSIGV Sbjct: 169 DQIYADKASLVGSIGVTAAGF 189 >gi|163796636|ref|ZP_02190595.1| Periplasmic serine protease [alpha proteobacterium BAL199] gi|159178196|gb|EDP62741.1| Periplasmic serine protease [alpha proteobacterium BAL199] Length = 425 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 92/238 (38%), Gaps = 16/238 (6%) Query: 35 SPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 P +A + + G + ++ + +E + +++ L +PGG A Sbjct: 55 EPGIAVVPVLGTLVRRSSYLAAASGLMAYADIGDEVEAVLSSADVRGVLLELDTPGGEAG 114 Query: 82 AGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + + +++ + KP+ E A SAGY I+ + I T+ VGSIGV+ + Sbjct: 115 GVFDLADRLSELQRASGKPIWAIADEAALSAGYAIASVAEQIWLTRTAEVGSIGVVAVHV 174 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + G++ V + K + SP ++ A +Q VD+ FV LV+ +R + Sbjct: 175 DQSAADRQAGLAYSFVHAGAHKIDGSPHLPLSDSARARIQADVDALNDAFVDLVARNRGL 234 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 D + + G A GL D VG + + + + K Sbjct: 235 AADAVRRT-EAATFRGERAVVAGLADWVGNMDTTLAAFAERIGRPRSIATRAFPGVKE 291 >gi|42520455|ref|NP_966370.1| prophage LambdaW4, minor capsid protein C, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|58696804|ref|ZP_00372334.1| hypothetical protein WwSim0278 [Wolbachia endosymbiont of Drosophila simulans] gi|58699409|ref|ZP_00374166.1| hypothetical protein WwAna0001 [Wolbachia endosymbiont of Drosophila ananassae] gi|99034491|ref|ZP_01314479.1| hypothetical protein Wendoof_01000714 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|225630333|ref|YP_002727124.1| minor capsid protein C, putative [Wolbachia sp. wRi] gi|225630727|ref|YP_002727518.1| minor capsid protein C, putative [Wolbachia sp. wRi] gi|42410194|gb|AAS14304.1| prophage LambdaW4, minor capsid protein C, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|58534074|gb|EAL58316.1| hypothetical protein WwAna0001 [Wolbachia endosymbiont of Drosophila ananassae] gi|58536999|gb|EAL60149.1| hypothetical protein WwSim0278 [Wolbachia endosymbiont of Drosophila simulans] gi|225592314|gb|ACN95333.1| minor capsid protein C, putative [Wolbachia sp. wRi] gi|225592708|gb|ACN95727.1| minor capsid protein C, putative [Wolbachia sp. wRi] Length = 353 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 89/186 (47%), Gaps = 1/186 (0%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 + +++ E IE D +I+ + SPGG + I + + +K ++ ++ Sbjct: 66 MTSYEKISEEIEEALIDKEVETIILDIDSPGGEVNGLFDLSDFIYQARRKKRIVAIANDD 125 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 A SA Y I+ ++ ++ TS VGSIGV+ + F +K G+ +V + K + +P Sbjct: 126 AYSAAYAIASSAEKVLVTRTSGVGSIGVIASHIDQSGFDEKQGIKYTTVFAGSRKNDLNP 185 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 + ++++ ++ V+ Y V L++ +RN+ + G + G +A ++GL D Sbjct: 186 HEPITSESLESLKSEVNRLYGMLVELIARNRNLSVEAIKSTEAGLYF-GEKAVEIGLADG 244 Query: 227 VGGQEE 232 + E Sbjct: 245 ITILSE 250 >gi|315126452|ref|YP_004068455.1| periplasmic protease [Pseudoalteromonas sp. SM9913] gi|315014966|gb|ADT68304.1| putative periplasmic protease [Pseudoalteromonas sp. SM9913] Length = 338 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 100/244 (40%), Gaps = 13/244 (5%) Query: 30 HVEDNSPHVARIAIRG-----QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 E+ + I G ++E +E + I I+ D ++V L S GG + Sbjct: 83 EKEEPKSRLYVIDFNGSMDAHEVESLREEVTAIISIA-DPKKDKVLVRLESGGGVVHGYG 141 Query: 85 AIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+ K+ + ++AAS GY+++C ++ I+AA ++VGSIGV+ Q P Sbjct: 142 LAASQLQRFKSAGIELTVSIDKVAASGGYMMACVADHIIAAPFAIVGSIGVIAQIPNFNK 201 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K V + + + K + F E KA + ++ ++ ++ F VS R P Sbjct: 202 ILKKNDVDFEQITAGEFKRTLTLFGENTDKAREKFREEIEQTHVLFKTFVSTQR--PSLN 259 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 +++ G W +A + GL+D + ++ + K Sbjct: 260 MDLVATGEHWFATQAIEKGLVDTIKTSDDALLEQQHQNQIYK----VQYKIKKGLSDKLA 315 Query: 264 KNLS 267 LS Sbjct: 316 IGLS 319 >gi|265763947|ref|ZP_06092515.1| protease [Bacteroides sp. 2_1_16] gi|263256555|gb|EEZ27901.1| protease [Bacteroides sp. 2_1_16] Length = 345 Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 76/226 (33%), Gaps = 6/226 (2%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 V + G + + I +D + +++ ++ PGG + + Sbjct: 122 DDASLPQGAVVVLTCEGVLYSWETYRLERYISAAMANDRISGVVLFVNGPGGMITRVDVL 181 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS--LVGSIGVLFQYPYVKPF 144 + I+ ++ KP++ + + ASA + A + + V + + + Sbjct: 182 EKLIR--QSPKPIVAYITGVCASAHFWFVSACARRFVSSPMDEIGSCGVVYTFQSFKEYY 239 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 S + + + ++++ + +H F + ++ + + YD Sbjct: 240 AQMGIEIEDIYPDSADLKNRAYRDKEEKQDDTLIKENLSFYHHLFAQAIARNLGVKYDAQ 299 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 L G+ + A G +D G E+ + A + K+ Sbjct: 300 DPLFRGQTFFADTALAKGYVDAYGSLEDAILWIAAQKTVKRANKMI 345 >gi|188533754|ref|YP_001907551.1| putative periplasmic protease [Erwinia tasmaniensis Et1/99] gi|188028796|emb|CAO96658.1| Peptidase family U7 protein [Erwinia tasmaniensis Et1/99] Length = 349 Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 106/227 (46%), Gaps = 12/227 (5%) Query: 32 EDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 ED + I +G ++ S+ E+ + + D +++ L SPGG + Sbjct: 97 EDERSTLYVIDFKGSMDASEVSSLREEVSAVMAVAEKGDE---VLLRLESPGGVVHGYGL 153 Query: 86 IFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 +Q+++++ +T V ++AAS GY+++C ++ IVAA S++GSIGV+ Q P Sbjct: 154 AASQLQRLRDKGITLTVAVDKVAASGGYMMACVADRIVAAPFSIIGSIGVVAQIPNFNRL 213 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L + + ++ + K + F E + + ++ ++ ++ F + V + R P Sbjct: 214 LKRNEIDVEMHTAGEYKRTLTLFGENTEQGREKFREDLNETHLLFKQFVHQMR--PALDI 271 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 ++ G W G +A + GL+D + +++ A IR + Sbjct: 272 DSVATGEHWYGTQALEKGLVDAISTSDDLIIDKMAKHQVIGIRYARR 318 >gi|254497745|ref|ZP_05110518.1| putative periplasmic protease [Legionella drancourtii LLAP12] gi|254353038|gb|EET11800.1| putative periplasmic protease [Legionella drancourtii LLAP12] Length = 282 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 102/233 (43%), Gaps = 15/233 (6%) Query: 39 ARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 + G I+ SQ +E++ + ++V L SPGG + +Q++ Sbjct: 49 YVLDFHGDIKASQ--VEQLRDEITAILCTAKPEDEVLVRLDSPGGIVNSYGLAASQLQRI 106 Query: 94 KNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 +++ + ++AAS GYL++C +N I+AA +++GSIGV+ Q P + +L K V I Sbjct: 107 RDKNIPLTVSIDKIAASGGYLMACVANRIIAAPFAIIGSIGVVAQIPNLHRWLKKHDVDI 166 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 + + + K + E K + Q+ ++ + F ++ +R ++ G Sbjct: 167 ELLTAGEYKRTLTLLGENTEKGRKKFQEDLEKIHTAFRNYIATNR--DQLDMDKIATGEH 224 Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 W +A ++ L+D + +E L + + K PPK L Sbjct: 225 WLAKDALELNLVDKLSTSDEYL-----LDKVSTYKAFKLTIPPKTSLANKLLK 272 >gi|219121417|ref|XP_002185933.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209582782|gb|ACI65403.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 165 Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 2/165 (1%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAET 126 +I+S++SPGGS + I+++ N V AAS GY+I+ ++ IVAA Sbjct: 1 VILSVNSPGGSVASYGLASAQIERLANVVGITTTACVDRYAASGGYMIASQAHRIVAAPF 60 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 + VGS+GV+ + + GV +K+ K + F V+ + ++ + ++ + Sbjct: 61 ASVGSVGVIMEGLNFHDLAKRYGVQPMILKAGNEKNPLTTFGSVSKQDLKHETERLEKVH 120 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 F +LV R DK +++G ++ G EA ++GL+D V + Sbjct: 121 DAFRQLVVRGRPELADKLDEVANGNVFLGLEAVELGLVDAVMTSD 165 >gi|332306445|ref|YP_004434296.1| Peptidase S49 domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173774|gb|AEE23028.1| Peptidase S49 domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 344 Score = 77.0 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 114/265 (43%), Gaps = 23/265 (8%) Query: 32 EDNSPHVARIAIRGQIE--DSQELIERIERISRDDSATA-LIVSLSSPGGSAYAGEAIFR 88 ED ++ I G ++ + + L E + + ++V L S GG + Sbjct: 92 EDEKGNLYVIDFNGSMDAHEVENLREEVTAVICIAKPKDEVLVRLESGGGVVHGYGLAAS 151 Query: 89 AIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 +Q++K++K V ++AAS GY+++C ++ ++AA+ +++GSIGV+ Q P L K Sbjct: 152 QLQRLKDKKIPLTVSVDKVAASGGYMMACVADNVLAAKFAIIGSIGVIAQIPNFNKLLKK 211 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 + + + K + F E N + + +D ++ + F V E R P + Sbjct: 212 NDIEFEQHTAGQFKRTLTMFGENNDEGREKFRDELEDVHQMFKGFVQEHR--PALAIDTV 269 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 + G W G++A ++GL+D + ++ S S +KI + +S Sbjct: 270 ATGEYWYGSKALELGLVDTIQTSDDFLLSA------NSDKKIYSVKYSVKKNLAEKFGMS 323 Query: 268 ISSLLEDTIPLMKQTKVQGLWAVWN 292 +S + L +W+ Sbjct: 324 VSHGVA-----------NTLMKLWH 337 >gi|535524|gb|AAA57008.1| protease IV [Escherichia coli] gi|535526|gb|AAA57009.1| protease IV [Escherichia coli] gi|535528|gb|AAA57010.1| protease IV [Escherichia coli] gi|535542|gb|AAA57017.1| protease IV [Escherichia coli] Length = 324 Score = 77.0 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 78/197 (39%), Gaps = 11/197 (5%) Query: 63 DDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 D + T +++ L + G + I +A+++ ++ + V E + Y ++ +N I Sbjct: 1 DRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKI 60 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQ 179 + +V G Y K LDKL VS + K+ PF +++P A + Sbjct: 61 WLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADS 120 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + + ++ V+ +R IP ++ L+ T A + L+D + Sbjct: 121 RWIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSA 180 Query: 232 EVWQSLYALGVDQSIRK 248 E+ ++L K Sbjct: 181 EIEKALTKEFGWSKTDK 197 Score = 61.2 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 10/115 (8%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGG+ Sbjct: 210 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGT 269 Query: 80 AYAGEAI-FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 A E I KPV+ + MAAS GY IS +N IVA ++L GSIG Sbjct: 270 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIG 324 >gi|317492188|ref|ZP_07950618.1| peptidase family S49 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919893|gb|EFV41222.1| peptidase family S49 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 348 Score = 77.0 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 107/249 (42%), Gaps = 10/249 (4%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIER-ISRDDSATALIVSLSSPGGSAYA 82 + P + + +G ++ + L E I ++ +++ L SPGG + Sbjct: 90 AKQGIAAKEKPCLYVLDFKGSMDAHEVSSLREEISAVLAVAKQGDEVLLRLESPGGVVHG 149 Query: 83 GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +Q+++ +T V ++AAS GY+++C ++ IVAA +++GSIGV+ Q P Sbjct: 150 YGLAASQLQRLRQAGVRLTVAVDKVAASGGYMMACVADRIVAAPFAIIGSIGVVAQIPNF 209 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 +L K + ++ + K + E + + ++ ++ ++ F VS+ R P Sbjct: 210 NRWLKKNDIDVELHTAGEFKRTLTLLGENTEQGREKFREELNETHALFKSFVSQQR--PS 267 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G +AK GL+D VG +++ + + K Sbjct: 268 LDIDSVATGEHWYGIQAKDKGLVDSVGTSDDLLIAEMENHDVIG----VRYTRRKRMMDR 323 Query: 262 DLKNLSISS 270 + + S+ Sbjct: 324 FTNSAAESA 332 >gi|308050237|ref|YP_003913803.1| inner membrane peptidase [Ferrimonas balearica DSM 9799] gi|307632427|gb|ADN76729.1| inner membrane peptidase [Ferrimonas balearica DSM 9799] Length = 338 Score = 77.0 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 103/265 (38%), Gaps = 22/265 (8%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 F ++ VA++ +E+ + D ++V + S GG +A Sbjct: 95 LFLIDFKAGIDAAQVAQLR--------EEITAVLTVAEARDE---VLVRVESGGGMVHAY 143 Query: 84 EAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + +++ K V ++AAS GY+++C + I++A ++VGSIGV+ Q P Sbjct: 144 GLAASQLDRIRQAKIPLTIAVDKVAASGGYMMACVGDKILSAPFAIVGSIGVIAQLPNFN 203 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L K + + + K + F E N ++ ++ ++ F V R P Sbjct: 204 KVLKKHDIEFEQHTAGDFKRTLTMFGENNEAGRDKFREELEETHLLFKEFVQRYR--PEL 261 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 ++ G W G +A ++GL+D + ++ + ++I + Sbjct: 262 DLDKVATGEHWFGLQALELGLVDAIQTSDDYLMA--------QDKEILQLQYEEKKNLAK 313 Query: 263 LKNLSISSLLEDTIPLMKQTKVQGL 287 + + LE + + + L Sbjct: 314 RFGRAAETALERGSLKLAELARRPL 338 >gi|60681898|ref|YP_212042.1| putative proteinase [Bacteroides fragilis NCTC 9343] gi|60493332|emb|CAH08117.1| putative proteinase [Bacteroides fragilis NCTC 9343] Length = 286 Score = 77.0 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 76/226 (33%), Gaps = 6/226 (2%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 V + G + + I +D + +++ ++ PGG + + Sbjct: 63 DDASLPQGAVVVLTCEGVLYSWETYRLERYISAAMANDRISGVVLFVNGPGGMITRVDVL 122 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS--LVGSIGVLFQYPYVKPF 144 + I+ ++ KP++ + + ASA + A + + V + + + Sbjct: 123 EKLIR--QSPKPIVAYITGVCASAHFWFVSACARRFVSSPMDEIGSCGVVYTFQSFKEYY 180 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 S + + + ++++ + +H F + ++ + + YD Sbjct: 181 AQMGIEIEDIYPDSADLKNRAYRDKEEKQDDTLIKENLSFYHHLFAQAIARNLGVKYDAQ 240 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 L G+ + A G +D G E+ + A + K+ Sbjct: 241 DPLFRGQTFFADTALAKGYVDAYGSLEDAILWVAAQKTVKRANKMI 286 >gi|2282048|gb|AAB65791.1| Z2Z3 protein [Vibrio shilonii AK1] Length = 330 Score = 76.6 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 83/223 (37%), Gaps = 19/223 (8%) Query: 29 SHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSS 75 S + + VA I + G I ++ L + + S A+I+++ S Sbjct: 30 SQITEMRDGVAIIHVNGVISRYANLFHAVCGGVSTEVLAKEFNAALNESSVKAVILNVDS 89 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 PGG A + I + +KPV V SA Y I+ A + + T+ VGSIG + Sbjct: 90 PGGEASGIHELSEMIHASRGKKPVRAYVGGDGCSAAYWITTACDRVTMDATARVGSIGTV 149 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 V K + ++ + + +Q +D+ F+ V+ Sbjct: 150 -----VSFVKRPDAEGAKRFEFVSSQSPNKRLDPESEQGQTAIQTQLDAMAEVFISRVAR 204 Query: 196 SRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 + + DK G + G +A G+ +G E + SL Sbjct: 205 NMGVTSDKVKSDFGQGGVKIGQQAVDAGMAHELGSLEALIASL 247 >gi|209694710|ref|YP_002262638.1| putative periplasmic protease [Aliivibrio salmonicida LFI1238] gi|208008661|emb|CAQ78846.1| probable protease SohB [Aliivibrio salmonicida LFI1238] Length = 353 Score = 76.6 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 48/253 (18%), Positives = 102/253 (40%), Gaps = 12/253 (4%) Query: 35 SPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 + + +G I +E + I I+ + +++ L S GG + Sbjct: 104 DARLFVLDFKGSIDAKEVAGLREEVSAILAIAVEGD--EVLLRLESGGGMVHGYGLASSQ 161 Query: 90 IQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 + +++ + V ++AAS GY+++C I+AA ++VGSIGV+ Q P L + Sbjct: 162 LDRLRDANITLTISVDKVAASGGYMMACIGEKIIAAPFAIVGSIGVVAQLPNFSKLLKRN 221 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 + + + + K + F E + KA + Q ++ ++ F + E R ++ Sbjct: 222 DIEFEQLTAGEYKRTLTMFGENSDKAREKFQLELEETHVLFKDFIHEHRADL--DLEKVA 279 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 G W G +A ++GLID + ++ +I + + S Sbjct: 280 TGEHWFGKQALELGLIDAIQTSDDYVTQACKDREVLAIHYV--QKKKLGAKIAGIAGQSA 337 Query: 269 SSLLEDTIPLMKQ 281 ++ I + ++ Sbjct: 338 ENVFMRMINIGQR 350 >gi|223993391|ref|XP_002286379.1| hypothetical protein THAPSDRAFT_261093 [Thalassiosira pseudonana CCMP1335] gi|220977694|gb|EED96020.1| hypothetical protein THAPSDRAFT_261093 [Thalassiosira pseudonana CCMP1335] Length = 185 Score = 76.6 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 7/178 (3%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN----IIVAA 124 +++ L SPGG+ + +++N + V +A A + AA Sbjct: 2 ILLLLDSPGGTVQDYGLASSHLARLRNEPHITLSVCVDRVAASGGYMMACQATPGQLFAA 61 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 ++VGSIGVL + L K GV +K+ KA EV + ++M Q D Sbjct: 62 PFAMVGSIGVLMETINFNDVLKKYGVKPLVIKAGKNKAPLKTLGEVTNEELKMAQSDADV 121 Query: 185 SYHWFVRLVSESRNI---PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + F V +SR + G ++ G EA+++GLID V +E A Sbjct: 122 IHKAFQDWVLQSRPNVVVSKGWIEKVCTGSVFLGKEARELGLIDRVMTSDEYVAERIA 179 >gi|146329631|ref|YP_001208985.1| putative periplasmic protease [Dichelobacter nodosus VCS1703A] gi|146233101|gb|ABQ14079.1| S49 family peptidase [Dichelobacter nodosus VCS1703A] Length = 333 Score = 76.2 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 95/211 (45%), Gaps = 10/211 (4%) Query: 30 HVEDNSPHVARIAIRG-----QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 D P + I G +ED ++ I I +++ ++ +++ L S GG YA Sbjct: 84 KNSDERPRLFVIDFDGDVEASAVEDLRDQISAILQVAEEED--EVLLRLESAGGYVYAYG 141 Query: 85 AIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + +++++ + V ++AAS GY+++C ++ ++AA +LVGSIGV+ + P Sbjct: 142 LAASQLVRLRDKAVRLVIAVDKVAASGGYMMACVADELLAAPFALVGSIGVIGELPNFHD 201 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K + + + K + F + + + + ++ F + R P Sbjct: 202 LLRKNDIHYEQHTAGQYKRTLTVFGQNTEDDRKQFRHELAETHALFKAHIQAMR--PNLA 259 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 ++ G W G++A GLID V ++ Sbjct: 260 VEEVATGETWYGSQALAKGLIDRVQTSDDYV 290 >gi|53713622|ref|YP_099614.1| protease [Bacteroides fragilis YCH46] gi|52216487|dbj|BAD49080.1| probable protease [Bacteroides fragilis YCH46] Length = 345 Score = 76.2 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 76/226 (33%), Gaps = 6/226 (2%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 V + G + + I +D + +++ ++ PGG + + Sbjct: 122 DDASLPQGAVVVLTCEGVLYSWETYRLERYISAAMANDRISGVVLFVNGPGGMITRVDVL 181 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS--LVGSIGVLFQYPYVKPF 144 + I+ ++ KP++ + + ASA + A + + V + + + Sbjct: 182 EKLIR--QSPKPIVAYITGVCASAHFWFVSACARRFVSSPMDEIGSCGVVYTFQSFKEYY 239 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 S + + + ++++ + +H F + ++ + + YD Sbjct: 240 AQMGIEIEDIYPDSADLKNRAYRDKEEKQDDTLIKENLSFYHHLFAQTIARNLGVKYDAQ 299 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 L G+ + A G +D G E+ + A + K+ Sbjct: 300 DPLFRGQTFFADTALAKGYVDAYGSLEDAILWVSAQKTVKRANKMI 345 >gi|304311309|ref|YP_003810907.1| Peptidase family S49 [gamma proteobacterium HdN1] gi|301797042|emb|CBL45255.1| Peptidase family S49 [gamma proteobacterium HdN1] Length = 344 Score = 76.2 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 101/251 (40%), Gaps = 14/251 (5%) Query: 36 PHVARIAIRGQI--EDSQELIERIERI--SRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 V + G + E + L + I I +++ L SPGG + ++ Sbjct: 94 KRVYVLDFNGDVRAEGVESLRQEITAILTFATPE-DEVVMRLESPGGQVHMYGFAASQLE 152 Query: 92 KVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++K R +T ++AAS GY+++C +N I+AA ++VGSIGV+ + P L +L + Sbjct: 153 RLKTRNIPLTVCVDKVAASGGYMMACVANRIIAAPFAIVGSIGVVAELPNFNRVLKRLDI 212 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 + K + E + ++ ++ + F LV R P ++ G Sbjct: 213 DYDVYTAGEFKRTVTMMGENTADGIAKFKEELEDTQVLFKALVHRHR--PQLAIDGVATG 270 Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270 W G+ A LID +G ++ L I + + L + + Sbjct: 271 EHWYGSSALSNALIDELGTSDDYLFDLSKNA------DIFEIKYEIRRGLAEKLGLHLDA 324 Query: 271 LLEDTIPLMKQ 281 ++++ + + Sbjct: 325 MIKNAVGRALR 335 >gi|257455400|ref|ZP_05620635.1| peptidase, S49 [Enhydrobacter aerosaccus SK60] gi|257447362|gb|EEV22370.1| peptidase, S49 [Enhydrobacter aerosaccus SK60] Length = 330 Score = 76.2 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 105/258 (40%), Gaps = 6/258 (2%) Query: 30 HVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATA-LIVSLSSPGGSAYAGEAI 86 + + + + G I + Q+L E I + A +IV L S GG +A Sbjct: 66 KNKTANKNCFVLDFHGDIKATEVQQLREEISTLLTVAQAEDEVIVRLESSGGMVHAYGLA 125 Query: 87 FRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + ++K + + ++AAS GY+++C ++ I+AA ++VGSIGV+ Q P L Sbjct: 126 AAQLARIKEAGLHLTVCIDKVAASGGYMMACVADKILAAPFAVVGSIGVVAQVPNFHDLL 185 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 +K + ++ + K + F E + Q Q ++ ++ F V + R P Sbjct: 186 EKHDIDVEVFTAGKYKRTVTVFGENTEEDKQKFQQELEETHKLFKDFVRKYR--PSLDVE 243 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 ++ G W G +A L+D + + +I+ + + Sbjct: 244 QVATGEHWYGEDAITRNLVDALQTSDSYILEKMTDSELYAIQSRQKPTIAQKLGISQAAQ 303 Query: 266 LSISSLLEDTIPLMKQTK 283 +++ ++ + + + Sbjct: 304 AVVATAIDKLPDALAKLE 321 >gi|330877863|gb|EGH12012.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. glycinea str. race 4] Length = 149 Score = 76.2 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 10/156 (6%) Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + +DKLGV ++ S KA PF Q Q V+D+++ F+ V Sbjct: 1 MTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFWQGVLDTTHRQFIASV 60 Query: 194 SESRNIPYDKTL--VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 + R L G IWTG +A +GL+D +G V + + + I + Sbjct: 61 KQGRGDRLKDKDHPELFSGLIWTGEQAVALGLVDGLGSASYVARDVIK------EKDIVE 114 Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + ++ + K L S + + I ++ L Sbjct: 115 YTVEESPFDRFSKKLGTS--IAERIAMLVGFNGPSL 148 >gi|21672552|ref|NP_660619.1| putative periplasmic protease [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25009272|sp|Q8K9P8|SOHB_BUCAP RecName: Full=Probable protease sohB gi|21623177|gb|AAM67830.1| possible protease SohB [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 342 Score = 76.2 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 96/220 (43%), Gaps = 7/220 (3%) Query: 41 IAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV- 99 I I +E+ + ++DD +++ L S GG + +++++ K Sbjct: 106 IHAHEVIGLREEISAILLAANKDDE---VLLRLESSGGVIHGYGLAAAQLERLRQNKIRL 162 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 I + ++AAS GY+++C ++ I++A +++GSIGV+ Q P L K + ++ + Sbjct: 163 IISIDKIAASGGYMMACVADYIISAPFAIIGSIGVVGQLPNFNKLLKKCNIDVELHTAGD 222 Query: 160 MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAK 219 K + F + + ++ ++ F + + + R +S+G W G A Sbjct: 223 YKRTLTMFGQNTELTRKKFCQELNLTHEIFKKFIKKMRPCL--DIENISNGEHWFGTIAF 280 Query: 220 KVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPKNY 258 K L+D + + + + +I+ I +N+ Sbjct: 281 KKNLVDEINTSDNILMSKMKEKYTLLNIQYIYKNKKLENF 320 >gi|213423129|ref|ZP_03356144.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 296 Score = 76.2 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 91/210 (43%), Gaps = 12/210 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELIERIER------ISRDDSATALIVSLSSPGGSAY 81 + P V I +G ++ + + + A++ L SPGG + Sbjct: 92 GDIATSDKPRVWVIDFKGSMDAHE--VNALREEVTAVLAVAKPGDRAVV-RLESPGGVVH 148 Query: 82 AGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +Q+++++ +T ++AAS GY+++C + I+AA ++VGSIGV+ Q P Sbjct: 149 GYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPN 208 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 FL + I+ + K + E + Q ++ ++ ++H F V R P Sbjct: 209 FNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMR--P 266 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 ++ G W G +A + GL+D + Sbjct: 267 ALDIEQVATGEHWYGQQALEKGLVDEINTS 296 >gi|189022217|ref|YP_001931948.1| serine peptidase S49 family [Vibrio shilonii] gi|161087235|gb|ABX56715.1| putative serine peptidase S49 family [Vibrio shilonii] Length = 434 Score = 76.2 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 83/223 (37%), Gaps = 19/223 (8%) Query: 29 SHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSS 75 S + + VA I + G I ++ L + + S A+I+++ S Sbjct: 49 SQITEMRDGVAIIHVNGVISRYANLFHAVCGGVSTEVLAKEFNAALNESSVKAVILNVDS 108 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 PGG A + I + +KPV V SA Y I+ A + + T+ VGSIG + Sbjct: 109 PGGEASGIHELSEMIHASRGKKPVRAYVGGDGCSAAYWITTACDRVTMDATARVGSIGTV 168 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 V K + ++ + + +Q +D+ F+ V+ Sbjct: 169 -----VSFVKRPDAEGAKRFEFVSSQSPNKRLDPESEQGQTAIQTQLDAMAEVFISRVAR 223 Query: 196 SRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 + + DK G + G +A G+ +G E + SL Sbjct: 224 NMGVTSDKVKSDFGQGGVKIGQQAVDAGMAHELGSLEALIASL 266 >gi|150024898|ref|YP_001295724.1| S49 family serine protease [Flavobacterium psychrophilum JIP02/86] gi|149771439|emb|CAL42908.1| Putative S49 family serine protease [Flavobacterium psychrophilum JIP02/86] Length = 294 Score = 76.2 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 80/223 (35%), Gaps = 10/223 (4%) Query: 28 SSHVEDNSPHVARIAIRGQIE--------DSQELIERIERISRDDSATALIVSLSSPGGS 79 + + +A++ + G+I + E++ ++ + D+ A + + SPGGS Sbjct: 64 GNSISVPKNSIAQVKMMGEIVAYSDWCAIGADEIVAQLYKAQEMDNVDATVFRIDSPGGS 123 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A +A + + + + C + +S GSIGV+ + Sbjct: 124 TKAIDAFREFSKYKTKPIVGLVKDGLSLGYWAAIEVCDYIMADGDVSSRFGSIGVVASFR 183 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV-NPKAVQMMQDVVDSSYHWFVRLVSESRN 198 L+ G+ I + + + + ++++ + F V R Sbjct: 184 DNTKALEVAGIKIHEIYPPESNHKNKDVKDARSGDYEGIIKNSLSPLAGMFQGGVISKRP 243 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 + + +G ++ EA ++GLID +G Q L Sbjct: 244 NLIKE-EGVLNGGVYFAKEALRLGLIDGIGDSRMAIQKAKQLA 285 >gi|332533580|ref|ZP_08409442.1| SohB protein, peptidase U7 family [Pseudoalteromonas haloplanktis ANT/505] gi|332036982|gb|EGI73441.1| SohB protein, peptidase U7 family [Pseudoalteromonas haloplanktis ANT/505] Length = 338 Score = 75.8 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 53/216 (24%), Positives = 102/216 (47%), Gaps = 7/216 (3%) Query: 26 SWSSHVEDNSPHVARIAIRGQIE--DSQELIERIERISR--DDSATALIVSLSSPGGSAY 81 S + ++ P + I G ++ + + L E I I + S +++ L S GG + Sbjct: 79 SKKADKDELKPRLYVIDFVGSMDAHEVESLREEITAIISIANPSKDKVLIRLESGGGVVH 138 Query: 82 AGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 +Q++KN ++ + ++AAS GY+++C ++ I+AA ++VGSIGV+ Q P Sbjct: 139 GYGLAASQLQRIKNAGIPLSVAIDKVAASGGYMMACVADEILAAPFAIVGSIGVIAQIPN 198 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K V + + + K + F E KA + ++ ++ ++ F VS R P Sbjct: 199 FNKILKKNDVEFEQITAGEFKRTLTLFGENTDKAREKFREEIEQTHDLFKTFVSTQR--P 256 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 +++ G W +A GL+DV+ ++ Sbjct: 257 SLDINLVATGEHWFATQAIDKGLVDVIKTSDDALLE 292 >gi|535570|gb|AAA57031.1| protease IV [Escherichia coli] Length = 324 Score = 75.8 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 11/197 (5%) Query: 63 DDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 D + T +++ L + G + I +A+++ ++ + V E + Y ++ +N I Sbjct: 1 DRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKI 60 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQ 179 + +V G Y K LDKL VS + K+ PF +++P A + Sbjct: 61 WLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADS 120 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + + ++ V+ +R IP + L+ T A + L+D + Sbjct: 121 RWIGELWQNYLNTVAANRQIPAQQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSA 180 Query: 232 EVWQSLYALGVDQSIRK 248 E+ ++L K Sbjct: 181 EIEKALTKEFGWSKTDK 197 Score = 61.2 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 10/115 (8%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGG+ Sbjct: 210 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGT 269 Query: 80 AYAGEAI-FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 A E I KPV+ + MAAS GY IS +N IVA ++L GSIG Sbjct: 270 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIG 324 >gi|288941275|ref|YP_003443515.1| peptidase S49 [Allochromatium vinosum DSM 180] gi|288896647|gb|ADC62483.1| peptidase S49 [Allochromatium vinosum DSM 180] Length = 338 Score = 75.8 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 104/250 (41%), Gaps = 18/250 (7%) Query: 40 RIAIRGQIEDSQE------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 I G I S+ + ++ D ++V L + GG + ++ Sbjct: 100 IIEFNGDIRASEVSALRVLVTTLLQEARAGDQ---VLVRLDNAGGMVSEHGLAASQLARL 156 Query: 94 KNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 + R V ++AAS GYL++C ++ I+AA +++GSIGVL + P L++ GV Sbjct: 157 RARGIPLTIAVDKVAASGGYLMACVADRIIAAPFAVIGSIGVLAELPNFHRVLERYGVDF 216 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 + + K + F E + Q +++ ++ ++ F VSE R P ++ G Sbjct: 217 ELHTAGEYKRTLTLFGENTDEGRQKLREQLEETHRLFKAFVSEYR--PGLDLERVATGEY 274 Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 W G A ++GL+D + ++ A ++ + K + S+ +L Sbjct: 275 WHGRRAVELGLVDAIQTSDDFILEAGAEMELLKLK----YRAHKKPIERLV--ASVRGVL 328 Query: 273 EDTIPLMKQT 282 + + + Sbjct: 329 DQVLAAASRL 338 >gi|27904758|ref|NP_777884.1| putative periplasmic protease [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46396886|sp|Q89AL0|SOHB_BUCBP RecName: Full=Putative protease sohB gi|27904155|gb|AAO26989.1| putative protease SohB [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 349 Score = 75.8 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 51/217 (23%), Positives = 98/217 (45%), Gaps = 12/217 (5%) Query: 34 NSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 P + I +G I +E+ I + D +++ L S GG+ + Sbjct: 102 AQPTLYVIDFKGGIAAHEVKSLREEISSIISVAQKHDE---VLLRLESSGGTIHGYGLAA 158 Query: 88 RAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 +Q++++RK + ++A S GY+++C +N I+A S++GSIGV+ Q+P + FL Sbjct: 159 VQLQRLRSRKIFLTISIDKIATSGGYMMACVANYIIATPFSIIGSIGVVAQFPNIHKFLK 218 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 K + ++ + K + F E P+ + + ++ ++ F + V R P Sbjct: 219 KNNIDVELHTAGVHKRTLTIFGENTPEDRKKFVEELNVAHDLFKKFVKTMR--PSLNIEK 276 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 LS+G W G+ A K L+D + ++ S Sbjct: 277 LSNGECWFGSIALKKKLVDDINTSDDFIISRIRKFNI 313 >gi|224014857|ref|XP_002297090.1| protease [Thalassiosira pseudonana CCMP1335] gi|220968209|gb|EED86558.1| protease [Thalassiosira pseudonana CCMP1335] Length = 217 Score = 75.8 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 91/214 (42%), Gaps = 10/214 (4%) Query: 36 PHVARIAIRGQIEDSQELIERIER-----ISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 P++ G + SQ + + + +++ L S GG+ + Sbjct: 2 PNLFVTRFSGDVSASQ--VNDLREEVTGILRASQPGDEVLMILQSGGGTVTGYGLSAAQL 59 Query: 91 QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 Q+ K + + V ++AAS GY++ C ++ IVA+ +++GSIGV+ P L + G Sbjct: 60 QRFKTKGLKLTICVEQVAASGGYMMCCTADRIVASPFAVLGSIGVISDIPNAYERLKQEG 119 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + +++ + K +P +V + ++ ++ ++ F V R P ++ Sbjct: 120 IEFQTITAGKYKRTVTPTKKVTKEDLKKSEEDINDILKLFKAFVKSQR--PQLDIENVAT 177 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 G W G +A GL D + ++V G D Sbjct: 178 GETWFGEDALAKGLCDEIATADDVLLEFVDNGYD 211 >gi|535530|gb|AAA57011.1| protease IV [Escherichia coli] Length = 324 Score = 75.8 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 11/197 (5%) Query: 63 DDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 D + T +++ L + G + I +A+++ ++ + V E + Y ++ +N I Sbjct: 1 DRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKI 60 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQ 179 + +V G Y K LDKL VS + K+ PF +++P A + Sbjct: 61 WLSPQGVVDLHGFATNSLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADS 120 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + + ++ V+ +R IP + L+ T A + L+D + Sbjct: 121 RWIGELWQNYLNTVAANRQIPAHQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSA 180 Query: 232 EVWQSLYALGVDQSIRK 248 E+ ++L K Sbjct: 181 EIEKALTKEFGWSKTDK 197 Score = 61.2 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 10/115 (8%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGG+ Sbjct: 210 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGT 269 Query: 80 AYAGEAI-FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 A E I KPV+ + MAAS GY IS +N IVA ++L GSIG Sbjct: 270 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIG 324 >gi|171911267|ref|ZP_02926737.1| peptidase S49 [Verrucomicrobium spinosum DSM 4136] Length = 233 Score = 75.8 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 77/222 (34%), Gaps = 20/222 (9%) Query: 33 DNSPHVARIAIRGQIE--------------DSQELIERIERISRDDSATALIVSLSSPGG 78 + +VA I I G + D + + + ++ + +++ ++SPGG Sbjct: 15 EGKSNVAVIPIYGVLAKNAGLLQQVCMGFCDINPIAHAVNQAAKAKDVSTIVLDIASPGG 74 Query: 79 SAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 A++ K V E AS+ Y + +N I ++ VGSIG Sbjct: 75 QVKGIRETASAVRAAAKTRGKTVYAFSDENMASSAYYLGSQANEIYVTPSATVGSIGTYL 134 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + L G+ ++ + K P ++ ++Q VD WF V Sbjct: 135 AWLDPTMKLAMEGLKLEFFGAGQHKGMGLPGKPLSEGDRVLLQATVDEFNGWFTSAVQ-- 192 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSL 237 G+ ++G A V L D + +E L Sbjct: 193 -GARPKVVNATMQGQSFSGERAVGVRLADGICDTWDEFIDLL 233 >gi|535536|gb|AAA57014.1| protease IV [Escherichia coli] Length = 324 Score = 75.4 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 77/197 (39%), Gaps = 11/197 (5%) Query: 63 DDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 D + T +++ L + G + I +A+++ ++ + + E + Y ++ +N I Sbjct: 1 DRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAIGENYSQGQYYLASFANKI 60 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQ 179 + +V G Y K LDKL VS + K+ PF +++P A + Sbjct: 61 WLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADS 120 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + + ++ V+ +R IP + L+ T A + L+D + Sbjct: 121 RWIGELWQNYLNTVAANRQIPAKQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSA 180 Query: 232 EVWQSLYALGVDQSIRK 248 E+ ++L K Sbjct: 181 EIEKTLTKEFGWSKTDK 197 Score = 60.8 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 10/115 (8%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGG+ Sbjct: 210 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGT 269 Query: 80 AYAGEAI-FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 A E I KPV+ + MAAS GY IS +N IVA ++L GSIG Sbjct: 270 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIG 324 >gi|55379667|ref|YP_137517.1| proteinase IV-like [Haloarcula marismortui ATCC 43049] gi|55232392|gb|AAV47811.1| proteinase IV-like [Haloarcula marismortui ATCC 43049] Length = 308 Score = 75.4 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 56/272 (20%), Positives = 106/272 (38%), Gaps = 20/272 (7%) Query: 10 TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSAT 67 T +++++ V +S E + +VA + I I S Q+ ++++ + ++S Sbjct: 17 TVLAVIAILIGAAVVPYAASVAEGDEQYVAVVNIDETISSSSSQDTVQKLRELRSNESVE 76 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 A+++ +SSPGGSA + E+++ A++++ KPV T V + AAS Y + S+ I S Sbjct: 77 AVVLRISSPGGSAASSESMYLAVKRLSAEKPVYTSVDQYAASGAYYTAVPSDRIYVTPAS 136 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 LVG +GV+ P A P ++S Sbjct: 137 LVGHVGVIGTAPSDGLS---------------PAATTGPDKAHRGMTRDQYYASLESMKR 181 Query: 188 WFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 FV V R + + +++ + G A + G D VGG E Sbjct: 182 AFVGAVMAERGDRLNVSRETVAEASAYQGGRAVQTGYADEVGGLEAAIAGAAGAADISEY 241 Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278 + + ++ P + + T+ Sbjct: 242 QVV--YHNPADPRGLLFLTGGSEAGGNATVAA 271 >gi|535532|gb|AAA57012.1| protease IV [Escherichia coli] gi|535538|gb|AAA57015.1| protease IV [Escherichia coli] gi|535540|gb|AAA57016.1| protease IV [Escherichia coli] gi|535568|gb|AAA57030.1| protease IV [Escherichia coli] Length = 324 Score = 75.0 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 11/197 (5%) Query: 63 DDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 D + T +++ L + G + I +A+++ ++ + V E + Y ++ +N I Sbjct: 1 DRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKI 60 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQ 179 + +V G Y K LDKL VS + K+ PF +++P A + Sbjct: 61 WLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADS 120 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + + ++ V+ +R IP + L+ T A + L+D + Sbjct: 121 RWIGELWQNYLNTVAANRQIPAQQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSA 180 Query: 232 EVWQSLYALGVDQSIRK 248 E+ ++L K Sbjct: 181 EIEKTLTKEFGWSKTDK 197 Score = 61.2 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 10/115 (8%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGG+ Sbjct: 210 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGT 269 Query: 80 AYAGEAI-FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 A E I KPV+ + MAAS GY IS +N IVA ++L GSIG Sbjct: 270 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIG 324 >gi|149911384|ref|ZP_01900003.1| sohB protein, peptidase U7 family [Moritella sp. PE36] gi|149805559|gb|EDM65563.1| sohB protein, peptidase U7 family [Moritella sp. PE36] Length = 359 Score = 75.0 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 105/257 (40%), Gaps = 14/257 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 +S ED P + I I+ +E+ + + D ++V L S GG + Sbjct: 103 ASTDEDIEPRLFVIDFTAGIDAKEVASLREEITAILFVATEHDE---VLVRLESGGGVVH 159 Query: 82 AGEAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 ++++ + + V ++AAS GY+++C ++ I+AA ++VGSIGV+ Q P Sbjct: 160 GYGLASSQLERLKQANIKLTIAVDKVAASGGYMMACIADHIIAAPFAIVGSIGVVAQIPN 219 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + ++ + + K + F E + Q ++ ++ F VS R P Sbjct: 220 FNRLLKKNNIDVEQLTAGEFKRTLTMFGENDDAGRAKFQQELEETHVLFKDFVSTHR--P 277 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ G W G A + GL+D + ++ ++ + Sbjct: 278 DMDIEKIATGEHWFGTHAHERGLVDTLQTSDDYLLKANKSKTIYIVKYVV--RKKLAEKL 335 Query: 261 CDLKNLSISSLLEDTIP 277 +++IS+ L + Sbjct: 336 AQAASMAISTSLNKFLQ 352 >gi|535534|gb|AAA57013.1| protease IV [Escherichia coli] Length = 324 Score = 75.0 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 77/197 (39%), Gaps = 11/197 (5%) Query: 63 DDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 D + T +++ L + G + I +A+++ ++ + + E + Y ++ +N I Sbjct: 1 DRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAIGENYSQGQYYLASFANKI 60 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQ 179 + +V G Y K LDKL VS + K+ PF +++P A + Sbjct: 61 WLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADS 120 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + + ++ V+ +R IP + L+ T A + L+D + Sbjct: 121 RWIGELWQNYLNTVAANRQIPAQQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSA 180 Query: 232 EVWQSLYALGVDQSIRK 248 E+ ++L K Sbjct: 181 EIEKTLTKEFGWSKTDK 197 Score = 60.8 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 10/115 (8%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79 D + + G I D +E +I D A+++ ++SPGG+ Sbjct: 210 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGT 269 Query: 80 AYAGEAI-FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 A E I KPV+ + MAAS GY IS +N IVA ++L GSIG Sbjct: 270 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIG 324 >gi|109898498|ref|YP_661753.1| putative periplasmic protease [Pseudoalteromonas atlantica T6c] gi|109700779|gb|ABG40699.1| inner membrane peptidase, Serine peptidase, MEROPS family S49 [Pseudoalteromonas atlantica T6c] Length = 344 Score = 75.0 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 112/247 (45%), Gaps = 10/247 (4%) Query: 29 SHVEDNSPHVARIAIRG-----QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 +D ++ I G ++++ +E + I I++ ++V L S GG + Sbjct: 89 KGDDDEKGNLYVIDFNGSMDAHEVDNLREEVTAIICIAKPKD--EVLVRLESGGGVVHGY 146 Query: 84 EAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 +Q++K++ +T V ++AAS GY+++C ++ ++AA+ +++GSIGV+ Q P Sbjct: 147 GLAASQLQRLKDKDIPLTVAVDKVAASGGYMMACVADNVLAAKFAIIGSIGVIAQIPNFN 206 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L K + + + K + F E + + + +D ++ + F V E R P Sbjct: 207 KLLKKNDIEFEQHTAGQFKRTLTMFGENSDEGREKFRDELEDVHQMFKGFVQEHR--PAL 264 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 ++ G W G++A +GL+D + ++ + S++ N + + Sbjct: 265 AIDTVATGEYWYGSKALDLGLVDTIQTSDDFLLDANNVKKIYSVKYSVKKNLAEKFGISV 324 Query: 263 LKNLSIS 269 K + S Sbjct: 325 TKGVVQS 331 >gi|189022207|ref|YP_001931940.1| peptidase S49 [Vibrio nigripulchritudo] gi|160334219|gb|ABX24532.1| putative peptidase S49 [Vibrio nigripulchritudo] Length = 434 Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 83/223 (37%), Gaps = 19/223 (8%) Query: 29 SHVEDNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSS 75 S + + VA I + G I ++ L + + S A+I+++ S Sbjct: 49 SQITEMRDGVAIIHVNGVISRYANLFHAVCGGVSTEVLAKEFNAAINESSVKAVILNVDS 108 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 PGG A + I + +KPV V SA Y I+ A + + T+ VGSIG + Sbjct: 109 PGGEASGIHELSEMIHASRGKKPVRAYVGGDGCSAAYWIATACDRVTMDATARVGSIGTV 168 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 V K + ++ + + +Q +D+ F+ V+ Sbjct: 169 -----VSFVKRPDAEGSKRFEFVSSQSPNKRLDPESEQGQTAIQTQLDAMADVFISRVAR 223 Query: 196 SRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 + + DK G + G +A G+ +G E + SL Sbjct: 224 NMGVTSDKVKSDFGQGGVKIGQQAVDAGMAHELGSLEALIASL 266 >gi|327311349|ref|YP_004338246.1| protease IV [Thermoproteus uzoniensis 768-20] gi|326947828|gb|AEA12934.1| protease IV, putative [Thermoproteus uzoniensis 768-20] Length = 533 Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 106/260 (40%), Gaps = 19/260 (7%) Query: 35 SPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 + I I + L+ I R+ +I+ + SPGG+ A EA++ A++ Sbjct: 44 KERIVVIPITAPLTSCWVNPLLPYILRL-NSSDVAGIILYIDSPGGTLDATEALYGALKG 102 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 + KPV V + AS + +S A+ I A+ SLVG+ + + + P + + + Sbjct: 103 L--GKPVYAVVSGLDASGAFYVSMAAEKIYASPGSLVGN---IGAWAVINPAVFWTPIPL 157 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL-SDGR 211 + S K + D VD + F+ +V +SR + + L + GR Sbjct: 158 EIFPSGYEKLFGMS--------LFGYYDSVDQAAASFLSVVLKSRGDRLNASADLLATGR 209 Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 ++T EA ++GLID +GG + + S + ++ + Sbjct: 210 LFTAQEALRIGLIDKIGGLADAVADMARSLGLTSYSVVSIYSYYGISPPNCSGLAMTQAK 269 Query: 272 LEDTIPLMKQTKVQGLWAVW 291 + + L+ + + ++ ++ Sbjct: 270 VP--LGLLANSTLNPVFYIY 287 >gi|164662519|ref|XP_001732381.1| hypothetical protein MGL_0156 [Malassezia globosa CBS 7966] gi|159106284|gb|EDP45167.1| hypothetical protein MGL_0156 [Malassezia globosa CBS 7966] Length = 704 Score = 74.3 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 106/206 (51%), Gaps = 11/206 (5%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIE------DSQELIERIERISRDDSATALIVSLSSP 76 V + H +D + VA I ++G ++ E I +++ + + A+++ ++S Sbjct: 311 VRICANEHADDPADKVAVIFLQGIMDRNSKSCSVSEAIHGLKQAAENKDIRAIVLRINSG 370 Query: 77 GGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG A EA++ AIQ V+ +KPV+ +AAS Y + A++ I A E+++ GSIGV Sbjct: 371 GGEVIASEALWAAIQHVRKSTQKPVVASFGSVAASGAYYAASAADAIFACESTMTGSIGV 430 Query: 135 LFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 F P + L DK+ ++++++ + + A +++ + V ++ VD Y F+ V Sbjct: 431 AFARPTILRELIDKVQLNVQTILAGSIGASVL--HDLDDQHVSRLRTHVDEMYKDFLHKV 488 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAK 219 + R + D L+ GRI TG A Sbjct: 489 MQGRGMSQDVLAGLAGGRIMTGLAAY 514 Score = 52.3 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 74/214 (34%), Gaps = 27/214 (12%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPG---------GSAYAGEAIFRAIQKVKNRK 97 I + ++IE + R D ++ S E + A+ + + K Sbjct: 81 ILELHQVIETLRRAKDDARIRGIVADFSQMHVPRAVLRQPLGLAQTEELLTALHEFRTAK 140 Query: 98 PV---------ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 + + +L++ + + + V +G+ + + L L Sbjct: 141 QDQFGKDQPATVAWSDTFDSQTAFLLATGFDRVYMQSSGQVPLVGLGSSLTFFRRMLQWL 200 Query: 149 GVSI--KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-------NI 199 GV + ++ E+ P+ + + DV+ H RL+ ++R ++ Sbjct: 201 GVRVLSETRNEYKSVTSAFVHDELPPEQLANLSDVLGGLQHNMARLLGQNRFSEQGPPHV 260 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 K + ++ +EA GLID + + ++ Sbjct: 261 ATAKAEHVLRHGPYSASEALAAGLIDGICHRHDI 294 Score = 37.7 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 20/65 (30%) Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 LV R + +D T A GLID +GG + + Sbjct: 541 QEWTTRAEDNESGNLLVRIERADDDTAANLQNDLASLTPTAAHGRGLIDGIGGLRDAARY 600 Query: 237 LYALG 241 YAL Sbjct: 601 AYALH 605 >gi|323144853|ref|ZP_08079422.1| putative signal peptide peptidase SppA, 36K type [Succinatimonas hippei YIT 12066] gi|322415378|gb|EFY06143.1| putative signal peptide peptidase SppA, 36K type [Succinatimonas hippei YIT 12066] Length = 379 Score = 73.9 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 112/255 (43%), Gaps = 6/255 (2%) Query: 37 HVARIAIRGQIEDSQ--ELIERIERISRDDSATA-LIVSLSSPGGSAYAGEAIFRAIQKV 93 ++ + G + ++ +L + I+ I + +IV+L+SPGG + + ++ Sbjct: 123 NLYVVNFVGSTKGNEVKKLRKEIDAILDVATPKDEVIVNLTSPGGMVNSYGLCASQLARI 182 Query: 94 KNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 ++R +T +AAS GYL++ ++ IVAA S +GSIGV+ P + LDK V Sbjct: 183 RDRGIKLTCTVDSVAASGGYLMASVADHIVAAPFSYIGSIGVIAGIPNFRKVLDKYDVEY 242 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 + + + K S E + + ++ +++ + F V + R P+ ++ G Sbjct: 243 EQITAGKYKRTLSMLGENTQEGRKKFKEELEAIHARFKEQVQKYR--PFINIDEVATGEY 300 Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 W ++A K+ L+D + +E A +++ + ++ + + + + Sbjct: 301 WLASDALKLKLVDEIATSDEYISKKVAQTYGCALQIMCARKQKRSLLSKLKQLILLKHIK 360 Query: 273 EDTIPLMKQTKVQGL 287 D L+ K Sbjct: 361 SDIGKLLLSAKDDEF 375 >gi|213971971|ref|ZP_03400069.1| bacteriophage-related protein [Pseudomonas syringae pv. tomato T1] gi|213923286|gb|EEB56883.1| bacteriophage-related protein [Pseudomonas syringae pv. tomato T1] Length = 381 Score = 73.9 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 18/225 (8%) Query: 29 SHVEDNSPHVARIAIRGQ----------IEDSQE---LIERIERISRDDSATALIVSLSS 75 S VA I + G I + L ++ D + ++I+++ S Sbjct: 18 SRTVSVRNGVAIIPVVGPVFRYANLFTEISGATSTQVLATDLQSALDDPNIKSIILNIDS 77 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 PGG A + I + RK ++ V ASA Y ++ A++ IV ET+L+GSIGV+ Sbjct: 78 PGGVAAGINELADQIHAGRARKSIVAYVGGTGASAAYWLASAASEIVIDETALLGSIGVV 137 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 + +++P K + + + VD+ FV V+ Sbjct: 138 VEAVVEGEASSGRKRYQIVSRNAPNKRLDMA----TEEGRAKVGETVDAMGEVFVAKVAR 193 Query: 196 SRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + + D + D G + GA A + GL +G E + L Sbjct: 194 NLGVASDAVPAMGDFGGLRVGAAAVESGLAHRLGSLEGLITELAK 238 >gi|301306894|ref|ZP_07212941.1| peptidase, S49 family protein [Escherichia coli MS 124-1] gi|300837903|gb|EFK65663.1| peptidase, S49 family protein [Escherichia coli MS 124-1] Length = 239 Score = 73.9 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 79/173 (45%), Gaps = 13/173 (7%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 67 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +V++ KPV ++M SAG L++ A++ + +T+ GSIGV+ + Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYG 186 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 L+K GV I + S K + +P+S + + +Q +D++ F + VS Sbjct: 187 AALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSA 239 >gi|256841934|ref|ZP_05547439.1| signal peptide peptidase SppA, 36K type [Parabacteroides sp. D13] gi|256736250|gb|EEU49579.1| signal peptide peptidase SppA, 36K type [Parabacteroides sp. D13] Length = 294 Score = 73.9 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 13/221 (5%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDSQE-------LIER--IERISRDDSATALIVSLSSPG 77 WS + VA + I G I + L + + R +++ A+++++ S G Sbjct: 73 WSPPEDAPKNSVAIMNINGAITKYDQECGPSGMLTKANLLNRCYNENNIKAIVLNIDSGG 132 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET-SLVGSIGVLF 136 G + AI KPV+ ++ ASA Y I+ + IVA +GS+G Sbjct: 133 GEGMGCRIMQEAIN--SRNKPVVAFCNDFVASAAYGIASCCDKIVANSNVCRIGSVGTYM 190 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + K+G+ + + +S + F + + ++ V D+ F+ ++ + Sbjct: 191 TIVDTSEYYAKMGIKLIDIYASKSTDKNQEFHKALQGDTEPLKKVCDTYNENFISSIANA 250 Query: 197 R-NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 R + + + G+++ EA +G+ID + E V Sbjct: 251 RVGVINEDQGKWATGKMFFAPEAMDIGMIDEIDTFENVLNY 291 >gi|221369919|ref|YP_002521015.1| Peptidase U7 [Rhodobacter sphaeroides KD131] gi|221162971|gb|ACM03942.1| Peptidase U7 [Rhodobacter sphaeroides KD131] Length = 477 Score = 73.9 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 74/180 (41%), Gaps = 13/180 (7%) Query: 36 PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A I I G + + + +I+ + D + L + + S GG Sbjct: 80 DGIAVIEIAGVLIHRGGWIGQSSGQTSYEGIAAQIKAAASDPAVRGLALEIDSFGGEVAG 139 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + I+ ++ KPV V E A SAGY ++ ++ I+ T +GSIGV+ + + Sbjct: 140 VFDLADRIRAIRGAKPVWAFVAEHALSAGYALASQADRILLPRTGALGSIGVVVLHADLS 199 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LD+ GV + + S K + +P+ + +Q +D F V+ R+ Sbjct: 200 GKLDQDGVRVTLIHSGQHKVDGNPYQPLPEAVQGDIQREIDVLRFLFAETVAAGRSGKIS 259 >gi|301385640|ref|ZP_07234058.1| hypothetical phage-related protein [Pseudomonas syringae pv. tomato Max13] Length = 410 Score = 73.1 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 18/225 (8%) Query: 29 SHVEDNSPHVARIAIRGQ----------IEDSQE---LIERIERISRDDSATALIVSLSS 75 S VA I + G I + L ++ D + ++I+++ S Sbjct: 47 SRTVSVRNGVAIIPVVGPVFRYANLFTEISGATSTQVLATDLQSALDDPNIKSIILNIDS 106 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 PGG A + I + RK ++ V ASA Y ++ A++ IV ET+L+GSIGV+ Sbjct: 107 PGGVAAGINELADQIHAGRARKSIVAYVGGTGASAAYWLASAASEIVIDETALLGSIGVV 166 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 + +++P K + + + VD+ FV V+ Sbjct: 167 VEAVVEGEASSGRKRYQIVSRNAPNKRLDMA----TEEGRAKVGETVDAMGEVFVAKVAR 222 Query: 196 SRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + + D + D G + GA A + GL +G E + L Sbjct: 223 NLGVASDAVPAMGDFGGLRVGAAAVESGLAHRLGSLEGLITELAK 267 >gi|302061402|ref|ZP_07252943.1| hypothetical phage-related protein [Pseudomonas syringae pv. tomato K40] Length = 410 Score = 73.1 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 18/225 (8%) Query: 29 SHVEDNSPHVARIAIRGQ----------IEDSQE---LIERIERISRDDSATALIVSLSS 75 S VA I + G I + L ++ D + ++I+++ S Sbjct: 47 SRTVSVRNGVAIIPVVGPVFRYANLFTEISGATSTQVLATDLQSALDDPNIKSIILNIDS 106 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 PGG A + I + RK ++ V ASA Y ++ A++ IV ET+L+GSIGV+ Sbjct: 107 PGGVAAGINELADQIHAGRARKSIVAYVGGTGASAAYWLASAASEIVIDETALLGSIGVV 166 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 + +++P K + + + VD+ FV V+ Sbjct: 167 VEAVVEGEASSGRKRYQIVSRNAPNKRLDMA----TEEGRAKVGETVDAMGEVFVAKVAR 222 Query: 196 SRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + + D + D G + GA A + GL +G E + L Sbjct: 223 NLGVASDAVPAMGDFGGLRVGAAAVESGLAHRLGSLEGLITELAK 267 >gi|320326645|gb|EFW82694.1| hypothetical phage-related protein [Pseudomonas syringae pv. glycinea str. B076] Length = 410 Score = 73.1 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 88/225 (39%), Gaps = 18/225 (8%) Query: 29 SHVEDNSPHVARIAIRGQ----------IEDSQE---LIERIERISRDDSATALIVSLSS 75 S VA I + G I + L ++ D S ++I+++ S Sbjct: 47 SRTVSVRNGVAIIPVVGPVFRYANLFTEISGATSTQVLATDLQSALDDPSIKSIILNIDS 106 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 PGG A + I + RK ++ V ASA Y ++ A++ IV ET+L+GSIGV+ Sbjct: 107 PGGVAAGINELADQIHAGRARKRIVAYVGGTGASAAYWLASAASEIVIDETALLGSIGVV 166 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 + +++P K + + + VD+ FV V+ Sbjct: 167 VEAVVEGEASSGRKRYQIVSRNAPNKRLDMA----TEEGRAKVGETVDAMGEVFVAKVAR 222 Query: 196 SRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + + D + D G + GA A + GL +G E + L Sbjct: 223 NLGVASDDVPAMGDFGGLRVGAAAVESGLAHRLGSLEGLITELAK 267 >gi|28952049|ref|NP_240107.2| putative periplasmic protease [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219682205|ref|YP_002468589.1| possible protease SohB [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|11387171|sp|P57370|SOHB_BUCAI RecName: Full=Probable protease sohB gi|219621938|gb|ACL30094.1| possible protease SohB [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086594|gb|ADP66675.1| putative periplasmic protease [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 336 Score = 73.1 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 96/231 (41%), Gaps = 11/231 (4%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAAS 109 +E+ + ++ D +++ L S GG + + +++ + I V ++AAS Sbjct: 111 EEISAILLVANKHDE---VLLRLESSGGVIHGYGLAASQLNRLRQKGIRLIVSVDKIAAS 167 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 GY+++C ++ IV+A +++GSIGV+ Q P L K + + + K + F Sbjct: 168 GGYMMACVADYIVSAPFAIIGSIGVVGQIPNFNKLLKKCNIDFELHTAGDYKRTLTMFGN 227 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 + D +++++ F + E R P +S+G W G A + L+D +G Sbjct: 228 NTESTRKKFCDELNTTHKLFKSFIKEMR--PSLDIEDVSNGEHWFGTIALEKKLVDQIGT 285 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 +++ + + ++ + +L E + + Sbjct: 286 SDDIL-----ISKMEEYTLLRIQYIYRKKILERFTASVTHNLSETLLKIFF 331 >gi|25403581|pir||A84963 probable proteinase sohB [imported] - Buchnera sp. (strain APS) gi|10038958|dbj|BAB12993.1| possible protease sohB [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|311086020|gb|ADP66102.1| putative periplasmic protease [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311087177|gb|ADP67257.1| putative periplasmic protease [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087706|gb|ADP67785.1| putative periplasmic protease [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 362 Score = 73.1 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 96/231 (41%), Gaps = 11/231 (4%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAAS 109 +E+ + ++ D +++ L S GG + + +++ + I V ++AAS Sbjct: 137 EEISAILLVANKHDE---VLLRLESSGGVIHGYGLAASQLNRLRQKGIRLIVSVDKIAAS 193 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 GY+++C ++ IV+A +++GSIGV+ Q P L K + + + K + F Sbjct: 194 GGYMMACVADYIVSAPFAIIGSIGVVGQIPNFNKLLKKCNIDFELHTAGDYKRTLTMFGN 253 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 + D +++++ F + E R P +S+G W G A + L+D +G Sbjct: 254 NTESTRKKFCDELNTTHKLFKSFIKEMR--PSLDIEDVSNGEHWFGTIALEKKLVDQIGT 311 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 +++ + + ++ + +L E + + Sbjct: 312 SDDIL-----ISKMEEYTLLRIQYIYRKKILERFTASVTHNLSETLLKIFF 357 >gi|304413780|ref|ZP_07395224.1| S49 family peptidase [Candidatus Regiella insecticola LSR1] gi|304283871|gb|EFL92265.1| S49 family peptidase [Candidatus Regiella insecticola LSR1] Length = 348 Score = 73.1 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 47/267 (17%), Positives = 113/267 (42%), Gaps = 18/267 (6%) Query: 29 SHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAYA 82 + P + + +G I+ +E+ + ++ D +++ L SPGG + Sbjct: 93 NTTATAKPCLYVLDFKGSIDAHEVSSLREEISAILAVATKQDE---VLLRLESPGGVVHG 149 Query: 83 GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + +++ + V ++AAS GY+++C ++ +V+A +++GSIGV+ Q P Sbjct: 150 YGLAASQLVRLQQAGIHLTVAVDKIAASGGYMMACVADRVVSAPFAIIGSIGVVAQIPNF 209 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 +L K + I+ + K + F E + + ++ ++ ++ F + + + +P Sbjct: 210 NRWLRKNNIDIELHTAGEFKRTLTLFGENTEQGREKFREELNETHLLFKQFIKQR--LPQ 267 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 ++ G W G AK+ GL+D + +E+ + + ++ + Sbjct: 268 LDIDTVATGEHWFGITAKEKGLVDAIESSDELL--IAKMA----QHEVISVKYSRRKRLI 321 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQGLW 288 D S++ + + Q + L Sbjct: 322 DRFTGSVAKNADRLLLRWWQRSEKPLI 348 >gi|163804098|ref|ZP_02197885.1| protease IV [Vibrio sp. AND4] gi|159172087|gb|EDP57039.1| protease IV [Vibrio sp. AND4] Length = 160 Score = 72.7 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 3/161 (1%) Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 +++ IVA T+L GSIG+ + +KLG+S V +SP + + ++ A Sbjct: 1 MSADKIVAQPTTLTGSIGIFSVITTFEKGFNKLGISTDGVGTSPF-SGDGITTGLSDGAS 59 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Q Q ++ Y F+ LV +R + ++ ++ GR+WTG +A GL+D +G ++ Q Sbjct: 60 QAFQLGIEHGYKRFISLVGSNREMSLEEVDKVAQGRVWTGQDAMSFGLVDQMGDFDDAVQ 119 Query: 236 SLYALGVDQSI--RKIKDWNPPKNYWFCDLKNLSISSLLED 274 L ++ +++ P + + N SL D Sbjct: 120 LAAKLAEVENYQLYWVEEPLSPAEQFVQEFMNQVKVSLGID 160 >gi|71019091|ref|XP_759776.1| hypothetical protein UM03629.1 [Ustilago maydis 521] gi|46099216|gb|EAK84449.1| hypothetical protein UM03629.1 [Ustilago maydis 521] Length = 949 Score = 72.3 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 91/197 (46%), Gaps = 11/197 (5%) Query: 31 VEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 +D V + + G I + +++ ++ + ++++ + S GG A E Sbjct: 377 SDDEVERVGVVYLLGGISSAPGEFSTSSVLKGLKEAAEHKDIKSIVLRIDSGGGDVVASE 436 Query: 85 AIFRAIQKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 +I+ A+++V+ KPV+ AAS GY + A++ I+A E ++ GSIGV P + Sbjct: 437 SIWDAVRRVREDYGKPVVASFGNTAASGGYYAASAADAILACENTVTGSIGVASLRPTIT 496 Query: 143 P-FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 F DK + I++ + S E++ +D Y F++ V + R+I Sbjct: 497 RAFFDKFNIGIQTFFT--ASTSQSTLHELDEAQQAKSAKHIDEMYDEFLQKVCDGRSISR 554 Query: 202 DKTLVLSDGRIWTGAEA 218 + L+ GR+ TG A Sbjct: 555 EVVENLAGGRVMTGLSA 571 Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 37/252 (14%), Positives = 77/252 (30%), Gaps = 28/252 (11%) Query: 52 ELIERIERISRDDSATALIVSLSSPGG---------SAYAGEAIFRAIQKVKNRKPV--- 99 E+I ++ DD ++ S E + +AI + K K Sbjct: 133 EVIRALKWAQADDRIKGILADFSGLHLPSSVTPNRLGLAQIEELMQAIHEFKIAKKQQHG 192 Query: 100 ------ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 I + +L++ A + + + G+ Q P+ K LD G+ + Sbjct: 193 DKARPSIAWADTFNSQGSFLLASAFDELWMQPAGSIPLTGLSAQIPFFKKVLDYFGIRVL 252 Query: 154 SVKSSPMKAEPSPF---SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD------KT 204 + K+ S F + + +++ V ++ +R D K Sbjct: 253 AEARREYKSMISTFSREDSLTAPQIHNEAELLGELNRGLVHAIAVNRFPDEDPELTSSKV 312 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA-LGVDQSIRKIKDWNPPKNYWFCDL 263 ++ EA ++GLI+ + ++ + L K K + L Sbjct: 313 EAWMKQGPFSTREATQLGLINGAAFKRDIIKRLIDPKHGGNDETKFKSLHHYNKINDRHL 372 Query: 264 KNLSISSLLEDT 275 +E Sbjct: 373 DRQLSDDEVERV 384 >gi|126729086|ref|ZP_01744900.1| probable bacteriophage-related protein [Sagittula stellata E-37] gi|126710076|gb|EBA09128.1| probable bacteriophage-related protein [Sagittula stellata E-37] Length = 340 Score = 72.3 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 1/171 (0%) Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 S GG + I + KP+ A A Y + ++ I + VGSIGV Sbjct: 16 SGGGLVDGCFELNDKIYARRGEKPIRAFADSYAYIAAYATASVADSITVTRSGGVGSIGV 75 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + + LD GV++ ++S P KAE P+ ++ A MQ VD S+ FV LV+ Sbjct: 76 IITHVEYSCALDTRGVTVTPIRSKPRKAESGPYQALSKAAQAKMQASVDFSHSEFVALVA 135 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 +R + D + EA + GL D +G ++ + A D Sbjct: 136 RNRGMSEADVDAT-DALTFLAHEAVENGLADQIGSTDDALAAFAASFNDPD 185 >gi|332829802|gb|EGK02444.1| hypothetical protein HMPREF9455_01401 [Dysgonomonas gadei ATCC BAA-286] Length = 304 Score = 72.3 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 86/230 (37%), Gaps = 10/230 (4%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQI--------EDSQELIERIERISRDDSATALIVSLSS 75 Y + + VA I I G + ++ + I + I+ ++ Sbjct: 67 YIQKDPFADLDENSVAIIPIIGSMFKYSSWWSYGMDDIADLIRLADASPNIIGTILLCNT 126 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 PGG++ + + A++ + + V + Y +S + ++G+IGV Sbjct: 127 PGGTSQSIIQLEDAMRN-RTKPSVGLIDGHCCSGGIYALSFCDRLTATNPMCVIGNIGVY 185 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP-KAVQMMQDVVDSSYHWFVRLVS 194 Q + + GV SV K + ++E ++++ + F ++ Sbjct: 186 NQIINDDKWYENQGVEFISVYPPESKYKNLAYTEAKNGNTKILIEESLSPFAIHFQNIIK 245 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 ++R + +G+ + +A+K GLID + E + L L ++ Sbjct: 246 QNRPNLDLSVEGIIEGKDFYAQDAEKNGLIDAITNLEGAVKLLRILHTEK 295 >gi|257471337|ref|ZP_05635336.1| putative periplasmic protease [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] Length = 362 Score = 72.3 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 97/231 (41%), Gaps = 11/231 (4%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAAS 109 +E+ + ++ D +++ L S GG + + +++ + I V ++AAS Sbjct: 137 EEISAILLVANKHDE---VLLRLESSGGVIHGYGLAASQLNRLRQKGIRLIVSVDKIAAS 193 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 GY+++C ++ IV+A +++GSIGV+ Q P L K + ++ + K + F Sbjct: 194 GGYMMACVADYIVSAPFAIIGSIGVVGQIPNFNKLLKKCNIDLELHTAGDYKRTLTMFGN 253 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 + D +++++ F + E R P +S+G W G A + L+D +G Sbjct: 254 NTESTRKKFCDELNTTHKLFKSFIKEMR--PSLDIEDVSNGEHWFGTIALEKKLVDQIGT 311 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 +++ + + ++ + +L E + + Sbjct: 312 SDDIL-----ISKMEEYTLLRIQYIYRKKILERFTASVTHNLSETLLKIFF 357 >gi|145350683|ref|XP_001419729.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579961|gb|ABO98022.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 234 Score = 72.0 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 100/215 (46%), Gaps = 10/215 (4%) Query: 30 HVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAG 83 + + HV + G + S +E+ + + + +++ L++ GG+ Sbjct: 9 NSKIKKKHVFVLNFFGDVRASQAEQLREEVTGLLRSAKK-ERGDEVVLRLNTGGGTVTGY 67 Query: 84 EAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + ++K+ + V ++AAS GY+++C ++ IVA+ +++GSIGV+ + P V Sbjct: 68 GLAAAQLMRIKDAGLKLTICVEQVAASGGYMMACVADEIVASPFAVLGSIGVISEQPNVY 127 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + G+ ++V + K +P +V + ++ + ++ F V+E+R P Sbjct: 128 ERLQREGIEFQTVTAGKFKRTLTPTKKVTEEDLEKSKKDIEDVLVLFKGFVAENR--PTL 185 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 ++ G W G +A L+D + ++V L Sbjct: 186 DIDNVATGETWFGKDALSRNLVDKLKTSDDVLLDL 220 >gi|222086932|ref|YP_002545466.1| protease protein [Agrobacterium radiobacter K84] gi|221724380|gb|ACM27536.1| protease protein [Agrobacterium radiobacter K84] Length = 409 Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 51/202 (25%), Positives = 82/202 (40%), Gaps = 4/202 (1%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 I G Q L + ++ D + ++ + + SPGG A + + KPV Sbjct: 76 EISGA-TSYQTLAKDLQVALDDRALHSIAMLIDSPGGEANGADEFAAMVNAANKVKPVTA 134 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 V M ASA Y I+ A+ IV +E S+VGSIGV+ L ++ ++ + Sbjct: 135 FVSGMGASAAYWIASAAGRIVLSEGSMVGSIGVVLGINDTT--LADERRGVRKLQFVSSQ 192 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKK 220 + +Q +VDS F+ V+ R + G + GAEA Sbjct: 193 SPNKRPDPNTEDGKSHIQAMVDSLASVFISKVAAYRGVSQADVIAKFGGGGMKVGAEAVN 252 Query: 221 VGLIDVVGGQEEVWQSLYALGV 242 G+ D VG E+V ++ G Sbjct: 253 AGMADEVGQFEDVLATMIQRGK 274 >gi|77465783|ref|YP_355286.1| serine peptidase [Rhodobacter sphaeroides 2.4.1] gi|77390201|gb|ABA81385.1| protein C. Serine peptidase. MEROPS family S49 [Rhodobacter sphaeroides 2.4.1] Length = 448 Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 13/185 (7%) Query: 38 VARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 VA I + G + + L+ +I D S + + + S GG Sbjct: 86 VAVIEVTGTLVHRGGWIGQSSGTTSYEGLMAQISAAVADPSVRGIALEIDSYGGEVAGLF 145 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + AI+ + KPV V E A SA Y I+ + IV T VGSIGVL + Sbjct: 146 DLADAIRAARAVKPVRAFVAEAALSAAYAIASQAERIVLPRTGAVGSIGVLLVHADFSQA 205 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + GV++ + + K + +P+ + +Q V++S F V+ R + Sbjct: 206 MADRGVAVTLIHAGRHKVDGNPYEALPEGVRADLQARVEASRALFAETVAAGRGARLSRQ 265 Query: 205 LVLSD 209 L+ Sbjct: 266 QALAT 270 >gi|219681648|ref|YP_002468034.1| possible protease SohB [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219624491|gb|ACL30646.1| possible protease SohB [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 336 Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 97/231 (41%), Gaps = 11/231 (4%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAAS 109 +E+ + ++ D +++ L S GG + + +++ + I V ++AAS Sbjct: 111 EEISAILLVANKHDE---VLLRLESSGGVIHGYGLAASQLNRLRQKGIRLIVSVDKIAAS 167 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 GY+++C ++ IV+A +++GSIGV+ Q P L K + ++ + K + F Sbjct: 168 GGYMMACVADYIVSAPFAIIGSIGVVGQIPNFNKLLKKCNIDLELHTAGDYKRTLTMFGN 227 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 + D +++++ F + E R P +S+G W G A + L+D +G Sbjct: 228 NTESTRKKFCDELNTTHKLFKSFIKEMR--PSLDIEDVSNGEHWFGTIALEKKLVDQIGT 285 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 +++ + + ++ + +L E + + Sbjct: 286 SDDIL-----ISKMEEYTLLRIQYIYRKKILERFTASVTHNLSETLLKIFF 331 >gi|307609646|emb|CBW99151.1| hypothetical protein LPW_09361 [Legionella pneumophila 130b] Length = 197 Score = 71.6 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 84/169 (49%), Gaps = 4/169 (2%) Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 + SPGG+ +Q+++++K + +MAAS GYL++C +N I+AA +++GS Sbjct: 1 MESPGGAVNGYGLAASQLQRIRDKKIPLTVSIDKMAASGGYLMACVANKIIAAPFAIIGS 60 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 IGV+ Q P +L K + ++ + + K + F+E K + Q+ ++ + F Sbjct: 61 IGVVAQIPNFHRWLKKNNIDVELLTAGEYKRTLTLFAENTEKGRKKFQEDLEKIHTAFRE 120 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE-VWQSLYA 239 V ++R ++ G W +A + L+D + +E + + + Sbjct: 121 YVLKNR--SQLDIDKVATGEHWIAKDAFDLRLVDKLATSDEYLIEKMAE 167 >gi|221369846|ref|YP_002520942.1| Protein C. Serine peptidase. MEROPS family S49 [Rhodobacter sphaeroides KD131] gi|221162898|gb|ACM03869.1| Protein C. Serine peptidase. MEROPS family S49 [Rhodobacter sphaeroides KD131] Length = 447 Score = 71.6 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 13/185 (7%) Query: 38 VARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 VA I + G + + L+ +I D S + + + S GG Sbjct: 86 VAVIEVTGTLVHRGGWIGQSSGTTSYEGLMAQITAAVADPSVRGIALEIDSYGGEVAGLF 145 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + AI+ + KPV V E A SA Y I+ + IV T VGSIGVL + Sbjct: 146 DLADAIRAARAVKPVRAFVAEAALSAAYAIASQAERIVLPRTGAVGSIGVLLVHADFSQA 205 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + GV++ + + K + +P+ + +Q V++S F V+ R + Sbjct: 206 MADRGVAVTLIHAGRHKVDGNPYEALPEGVRADLQARVEASRALFAETVAAGRGARLSRQ 265 Query: 205 LVLSD 209 L+ Sbjct: 266 QALAT 270 >gi|319411923|emb|CBQ73966.1| related to Signal peptide peptidase [Sporisorium reilianum] Length = 939 Score = 71.6 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 90/191 (47%), Gaps = 11/191 (5%) Query: 37 HVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 V + + G I + +++ ++ + + ++++ + S GG + E+I+ A+ Sbjct: 378 QVGVVYLLGGISSAPGEFSTSSVLKGLKEAAEHEDIKSIVLRIDSGGGDVVSSESIWDAV 437 Query: 91 QKVKNR--KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP-FLDK 147 ++V+ KPV+ AAS GY + A++ I+A E ++ GSIGV P + F D+ Sbjct: 438 RRVREDYGKPVVASFGNAAASGGYYAASAADAILACENTVTGSIGVASLRPTITRAFFDR 497 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 + I+S + S +++ +D Y F++ V + R+I D L Sbjct: 498 FNIGIQSFFTGS--TSQSTLHDLDEAQRAKSAKHIDEMYGDFLQKVCDGRSISRDIIESL 555 Query: 208 SDGRIWTGAEA 218 + GR+ TG A Sbjct: 556 AGGRVMTGLSA 566 Score = 56.5 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 72/215 (33%), Gaps = 27/215 (12%) Query: 52 ELIERIERISRDDSATALIVSLSSPGG---------SAYAGEAIFRAIQKVKNRKPV--- 99 E+I ++ D+ + S E + +AI + K K Sbjct: 128 EVIRALKWAQADERIKGIFADFSGLHLPSSVTPNRLGLAQIEELMQAIHEFKLAKKQQHG 187 Query: 100 ------ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 I + +L++ A + + V G+ Q P+ K LD G+ + Sbjct: 188 ESARPSIAWADTFNSQGSFLLASAFDELWMQPAGSVPLTGLGAQIPFFKKVLDYFGIRVL 247 Query: 154 SVKSSPMKAEPSPF---SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD------KT 204 + K+ S F + +Q +++ V V+ +R D K Sbjct: 248 AEARREYKSMISTFSREDSLPAPQIQNEAELLGELNRGLVHAVAVNRYPDQDPDVVSRKV 307 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 ++ EAK++GLI+ + ++ + L Sbjct: 308 EAWMKDGPFSTREAKELGLINGAAFKRDIIKRLVD 342 >gi|292492693|ref|YP_003528132.1| peptidase S49 domain protein [Nitrosococcus halophilus Nc4] gi|291581288|gb|ADE15745.1| Peptidase S49 domain protein [Nitrosococcus halophilus Nc4] Length = 325 Score = 71.6 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 99/243 (40%), Gaps = 12/243 (4%) Query: 37 HVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + + G I + +E+ + + +D +++ L + GG + + Sbjct: 87 RIFVLDFHGDIRATAVASLREEITAVLSVATPEDE---VLLRLENGGGLVHEHGLAASQL 143 Query: 91 QKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 ++++ ++ V +MAAS GY+++C N I+AA +++GSIG L Q P LDK G Sbjct: 144 ERIRKKQIPLTIAVDKMAASGGYMMACVGNRIIAAPFAVIGSIGALMQLPNFHRLLDKHG 203 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + + +K+ +K + F + ++ + V+ + F ++ R P + Sbjct: 204 IDFEQIKAGELKRTVTLFGINTDRDRELAKKQVEDIHQLFKEFITHYR--PQVDLSQTAT 261 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 G+ W +A+++ LID + ++ + + + + Sbjct: 262 GQHWHAIQAQELNLIDDLETSDDYLLEASKTADLYEVSYAVKKTFAERFLSRVQAASDKA 321 Query: 270 SLL 272 L Sbjct: 322 LGL 324 >gi|330970624|gb|EGH70690.1| peptidase S49 [Pseudomonas syringae pv. aceris str. M302273PT] Length = 410 Score = 71.6 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 102/269 (37%), Gaps = 22/269 (8%) Query: 29 SHVEDNSPHVARIAIRGQ----------IEDSQE---LIERIERISRDDSATALIVSLSS 75 S VA I + G I + L ++ D S ++I+++ S Sbjct: 47 SRTVSVRNGVAIIPVVGPVFRYANLFTEISGATSTQVLATDLQSALDDPSIKSIILNIDS 106 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 PGG A + I + RK ++ V ASA Y ++ A++ IV ET+L+GSIGV+ Sbjct: 107 PGGVAAGINELADQIHAGRARKRIVAYVGGTGASAAYWLASAASEIVIDETALLGSIGVV 166 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 + +++P K + + + VD+ FV V+ Sbjct: 167 VEAVVEGEASSGRKRYQIVSRNAPNKRLDMA----TEEGRAKVGETVDAMGEVFVAKVAR 222 Query: 196 SRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 + + D + D G + G A + GL +G E + L + +++ + Sbjct: 223 NLGVASDAVPAMGDFGGLRVGVAAVESGLAHRLGSLEGLITELAK----PAATQLRTFTM 278 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 L+ + +TI + + ++ Sbjct: 279 TTVNSTAQLREALAAGTDPNTIEIAQASQ 307 >gi|196229320|ref|ZP_03128185.1| peptidase S49 [Chthoniobacter flavus Ellin428] gi|196226552|gb|EDY21057.1| peptidase S49 [Chthoniobacter flavus Ellin428] Length = 269 Score = 71.2 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 74/204 (36%), Gaps = 19/204 (9%) Query: 35 SPHVARIAIRGQIE--------------DSQELIERIERISRDDSATALIVSLSSPGGSA 80 + I I G + D E+ E I + A+++ + SPGG+ Sbjct: 49 ENGIGIIPITGVLMKRPDIFSRVLLGAADMDEISEAINEAGDREDVQAVLLDIDSPGGTV 108 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + A+ + K V SA Y I+ +++I + ++ VGSIGVL Sbjct: 109 TGTPELAAAVAALSRAKYVYAFSDGQMCSAAYWIASQADVIFSTPSARVGSIGVLLPMLD 168 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV-SESRNI 199 + G+ + + K+ P + +Q ++D F V + R I Sbjct: 169 ETEAFKQEGLKVDLFAAGKYKSVGVPGVALTDDQRTWLQSMIDEINGEFQAAVLARGRAI 228 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGL 223 G+ ++G +A + L Sbjct: 229 DPAAME----GQDFSGQKAFENSL 248 >gi|118355546|ref|XP_001011032.1| probable peptidase, putative [Tetrahymena thermophila] gi|89292799|gb|EAR90787.1| probable peptidase, putative [Tetrahymena thermophila SB210] Length = 265 Score = 71.2 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 54/253 (21%), Positives = 110/253 (43%), Gaps = 12/253 (4%) Query: 37 HVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 ++ I I I+ +Q++ I +I D A A+ + ++SPGGS + I ++ Sbjct: 15 YIPVIVINTGIDAKATQDVRNSIAKIDAD-RAKAVALLINSPGGSPVQCDIITEMVKGFS 73 Query: 95 NRKPV--ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 + + T +++AAS G + + A ETSLVGS+GV+ + + + + Sbjct: 74 KKHHLPLYTFANDIAASGGQFLLSIGDKSFAQETSLVGSVGVVGMWFGLGNLAKEYKLKP 133 Query: 153 KSVKSSPMKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY---DKTLVL 207 + S+ + + F ++ P+ + + + + + F+ + + N ++ + Sbjct: 134 EIFSSNQEQELAYMNFFEDLTPEKKEKIIRTLKTHHKIFIEHIEKHSNYKISPEEREKKI 193 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP-KNYWFCDLKNL 266 D I G +A K GL+D +G + V + GV I + W F + Sbjct: 194 YDASIVLGKDAVKYGLVDEIGQYQSVLNRDFP-GVQIEIISSESWRQKILGSIFAKMGVS 252 Query: 267 SISSLLEDTIPLM 279 + S+L+ + LM Sbjct: 253 TQESILDRNLLLM 265 >gi|167626504|ref|YP_001677004.1| periplasmic protease [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596505|gb|ABZ86503.1| peptidase, S49 (protease IV) family protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 338 Score = 71.2 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 103/256 (40%), Gaps = 22/256 (8%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIV----------SLSSPGG 78 E I +G I SQ +E + TA++ + SPGG Sbjct: 86 DKQEKPKQRKFIINFKGDIHASQ--VEDLRN-----EVTAILAVAVADDEVVVRIDSPGG 138 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 +++++ +T ++AAS GY++S +N I+AA ++VGSIGV+ Sbjct: 139 VVNGYGFAAAQLERIRQAGITLTVCIDQVAASGGYMMSVVANKIIAAPFAIVGSIGVVGT 198 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 P ++ L+K G++++ S K + E + + + +++ + F + + R Sbjct: 199 VPNIRELLEKNGINVEMHTSGEFKRTLTTVGENTEEGRKKFKQDLENIHELFKKHILAYR 258 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 P ++ G W G +A ++GL+D + ++ L S+ ++ Sbjct: 259 --PNLDMHKVATGEYWFGKDALELGLVDEIRTYDDYLIEF--LDNHYSVYEVSYVRKKDK 314 Query: 258 YWFCDLKNLSISSLLE 273 + + ++ Sbjct: 315 GFIKSKLAMIKKTITS 330 >gi|170744988|ref|YP_001763287.1| peptidase S49 [Methylobacterium radiotolerans JCM 2831] gi|170659395|gb|ACB28442.1| peptidase S49 [Methylobacterium radiotolerans JCM 2831] Length = 374 Score = 71.2 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 13/215 (6%) Query: 38 VARIAIRGQ-------IEDSQELIE------RIERISRDDSATALIVSLSSPGGSAYAGE 84 A I + G I S L+ ++ S+DD A+++ PGG A Sbjct: 73 TAIIPVIGSTVNRGAWIGASSGLVSYEGLKFQLAHASQDDRTRAVLLDFECPGGEAVGAF 132 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 +++V KPV+ V+ + ASA Y ++ + IV + + GSIGV+ + V Sbjct: 133 EAAAVVRQVAALKPVVAVVNGLCASAAYAMASGATRIVTTPSGIAGSIGVVMLHTDVSGA 192 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K GV + + K + P+ + ++ ++ Y F+ V+ R + Sbjct: 193 LAKAGVKPTLIFAGKHKTDGHPYGPLPDSVKADLRAEIEGFYAAFINCVATGRKNLTAEA 252 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + ++ R + GA A GL D VG E L A Sbjct: 253 IRGTEARTFMGAAAVAAGLADEVGTFEGALVDLEA 287 >gi|153838850|ref|ZP_01991517.1| peptidase S49 [Vibrio parahaemolyticus AQ3810] gi|149747734|gb|EDM58634.1| peptidase S49 [Vibrio parahaemolyticus AQ3810] Length = 295 Score = 71.2 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 92/204 (45%), Gaps = 12/204 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 S PH+ + G I+ +E+ + D +++ L S GG + Sbjct: 97 GSLDSKREPHLFVLDFNGSIDAKEVGSLREEITAILAVAREGDE---VLLRLESGGGMVH 153 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 154 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPN 213 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E KA + ++ ++ F + E R P Sbjct: 214 FNKLLKKHDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHVLFKDFIRERR--P 271 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLI 224 + ++ G W G +AK++GL+ Sbjct: 272 SLELEKVATGEHWFGTQAKELGLV 295 >gi|241668941|ref|ZP_04756519.1| putative periplasmic protease [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877473|ref|ZP_05250183.1| peptidase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843494|gb|EET21908.1| peptidase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 338 Score = 70.8 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 98/245 (40%), Gaps = 22/245 (8%) Query: 40 RIAIRGQIEDSQELIERIERISRDDSATALIV----------SLSSPGGSAYAGEAIFRA 89 I +G I SQ +E + TA++ + SPGG Sbjct: 97 IINFKGDIHASQ--VEDLRN-----EVTAILAVAVADDEVVVRIDSPGGVVNGYGFAAAQ 149 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 +++++ +T + A++G + A N I+AA ++VGSIGV+ P ++ L+K Sbjct: 150 LERIRQAGITLTVCIDQVAASGGYMMSAVANKIIAAPFAIVGSIGVVGTVPNIRELLEKN 209 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 G++++ S K + E + + + +++ + F + + R P ++ Sbjct: 210 GINVEMHTSGEFKRTLTTVGENTEEGRKKFKQDLENIHELFKKHILAYR--PNLDMHKVA 267 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 G W G +A ++GL+D + ++ L S+ ++ + + Sbjct: 268 TGEYWFGKDALELGLVDEIRTYDDYLIEF--LDNHYSVYEVSYVRKKDKGFIKSKLAMIR 325 Query: 269 SSLLE 273 ++ Sbjct: 326 KTITS 330 >gi|146277791|ref|YP_001167950.1| peptidase S49 [Rhodobacter sphaeroides ATCC 17025] gi|145556032|gb|ABP70645.1| peptidase S49 [Rhodobacter sphaeroides ATCC 17025] Length = 314 Score = 70.8 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 77/214 (35%), Gaps = 19/214 (8%) Query: 36 PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 VA + + G I ++ + D + +++ +PGG Sbjct: 76 DGVAVVPVFGPIFPRANMINSSAGGTSLDAIMRDMRVALADGNVERIVMVFDTPGGVVSG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I+ KP+ V +AASAGY ++ + +V + VGSIGV+ + Sbjct: 136 LGEAAEGIR--GASKPITGFVTGIAASAGYWLASQAAELVVERAASVGSIGVVASTSRQE 193 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 S + V S + P P + +Q+ VD+ FV V++ R Sbjct: 194 GPGADGRRSYEIVSSGAPRKRPDPS---TDEGRAAIQEEVDAIEAVFVGDVAKGRKTTAT 250 Query: 203 KTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 L G + A G+ D +G E V + Sbjct: 251 TVLSSFGRGAMVPAGAAIDAGMADRIGTLESVLR 284 >gi|6723247|dbj|BAA89643.1| gp18 [Wolbachia phage WO] Length = 350 Score = 70.8 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 97/218 (44%), Gaps = 14/218 (6%) Query: 31 VEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPG 77 V++N A I I G + +++ E IE D+ +++ + SPG Sbjct: 42 VKNNIEKTAIIPIHGILTKKPEAFDDFLGMTSYEKMQEEIEEALEDEKVEIILLDIDSPG 101 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G + I +++K +I ++ A SA Y I+ ++ I TS VGSIGV+ Sbjct: 102 GEVNGIFDLADFIYNARSKKRIIAIANDDAYSAAYAIASSAEKIFLTRTSGVGSIGVIAS 161 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + F +K G+ ++ + K + +P + ++++ ++ V+ Y V L++ +R Sbjct: 162 HIDQSGFDEKQGIKYSTIFAGSRKNDLNPHEPITSESLENLKSEVNRLYGMLVELIARNR 221 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 ++ + G + G +A ++GL D V E Sbjct: 222 SLSIEAIKSTEAGLYF-GEKAVEIGLADGVTTFFEFIN 258 >gi|224135353|ref|XP_002322052.1| predicted protein [Populus trichocarpa] gi|222869048|gb|EEF06179.1| predicted protein [Populus trichocarpa] Length = 212 Score = 70.8 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 69/164 (42%), Gaps = 3/164 (1%) Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE-PSPFSEVNP 172 ++ A++ IVA +L GSIGV+ + +K+G + + + + + P Sbjct: 1 MAMAADTIVAENLTLTGSIGVVTGKFSLGKLYEKIGFNKEIISRGKYAELLAADQRPLRP 60 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++ ++Y F + SR++P DK ++ GR+WTG +A GL+D +GG Sbjct: 61 DEAELFAKSAQNAYEQFRDKAAFSRSMPVDKMEEVAQGRVWTGQDAASRGLVDAIGGFSR 120 Query: 233 VWQSLYALGVDQSIRKI--KDWNPPKNYWFCDLKNLSISSLLED 274 R++ + + P L + S + + Sbjct: 121 AVAIAKQKANIPQDRQVMLVELSRPSPTLPEILSGIGSSVVGAE 164 >gi|251780299|ref|ZP_04823219.1| Clp protease family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084614|gb|EES50504.1| Clp protease family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 232 Score = 70.4 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 80/228 (35%), Gaps = 39/228 (17%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73 ++ + + ++I GQIE + +I ++ + ++D+ +++ L Sbjct: 29 FGNTAPVTPNKSIQVLSIIGQIEGHMVLPPQTKATRYEHIIPQLIDLEQNDNVKGVLIVL 88 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 ++ GG AG AI I+ + KP ++ V S G ++ AS+ ++ + Sbjct: 89 NTVGGDVEAGLAIAEMIRSM--SKPTVSIVTGGGHSIGVPLATASDYSFITPSATMIVHP 146 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V + +M + + + Sbjct: 147 VRMNGFIIGVAQTF------------------------EYFKKMQERINEFITRTSHIKE 182 Query: 194 SESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 E +L+D G I G +A + GLID VGG +E L L Sbjct: 183 EELEKFMLQTNELLNDVGTILIGKQAVECGLIDEVGGIKEALAKLKEL 230 >gi|332560534|ref|ZP_08414852.1| Protein C, Serine peptidase, MEROPS family S49 [Rhodobacter sphaeroides WS8N] gi|332274332|gb|EGJ19648.1| Protein C, Serine peptidase, MEROPS family S49 [Rhodobacter sphaeroides WS8N] Length = 448 Score = 70.4 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 13/185 (7%) Query: 38 VARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 VA I + G + + L+ +I D S + + + S GG Sbjct: 86 VAVIEVTGTLVHRGGWIGQSSGTTSYEGLMAQITAAVADPSVHGIALEIDSYGGEVAGLF 145 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + AI+ + KPV V E A SA Y I+ + IV T VGSIGVL + Sbjct: 146 DLADAIRAARAVKPVRAFVAEAALSAAYAIASQAERIVLPRTGAVGSIGVLLVHADFSQA 205 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + GV++ + + K + +P+ + +Q V++S F V+ R + Sbjct: 206 MADRGVAVTLIHAGRHKVDGNPYEALPEGVRADLQARVEASRGLFAETVAAGRGARLSRQ 265 Query: 205 LVLSD 209 L+ Sbjct: 266 QALAT 270 >gi|188589517|ref|YP_001920628.1| Clp protease [Clostridium botulinum E3 str. Alaska E43] gi|188499798|gb|ACD52934.1| Clp protease family protein [Clostridium botulinum E3 str. Alaska E43] Length = 232 Score = 70.4 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 80/228 (35%), Gaps = 39/228 (17%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73 ++ + + ++I GQIE + +I ++ + ++D+ +++ L Sbjct: 29 FGNTAPVTPNKSIQVLSIIGQIEGHMVLPPQTKATRYEHIIPQLIDLEQNDNVKGVLIVL 88 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 ++ GG AG AI I+ + KP ++ V S G ++ AS+ ++ + Sbjct: 89 NTVGGDVEAGLAIAEMIRSM--SKPTVSIVTGGGHSIGVPLATASDYSFITPSATMIVHP 146 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V + +M + + + Sbjct: 147 VRMNGFIIGVAQTF------------------------EYFKKMQERINEFITRTSHIKE 182 Query: 194 SESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 E +L+D G I G +A + GLID VGG +E L L Sbjct: 183 EELEKFMLQTNELLNDVGTILIGKQAVECGLIDEVGGIKEALAKLKEL 230 >gi|2499883|sp|Q44600|SOHB_BUCSC RecName: Full=Probable protease sohB gi|769834|gb|AAA92792.1| Soh B protease [Buchnera aphidicola] Length = 305 Score = 70.4 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 12/210 (5%) Query: 32 EDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 N+P + + +G + S+ E+ I +D +++ L S GG + Sbjct: 98 NQNNPILYVLDFKGNVSASEVTSLREEISAIILAAKENDE---VLLRLESGGGVIHGYGL 154 Query: 86 IFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + +++ + V ++AAS GY+++C +N I+AA S++GSIGV+ Q P Sbjct: 155 ASSQLSRLREKNIRLTVSVDKIAASGGYMMACVANYIIAAPFSVIGSIGVVAQIPNFNKL 214 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K V ++ S K + F E +A + ++ ++ F V R P Sbjct: 215 LKKNNVDMELHTSGLYKRTLTVFGENTKEAREKFCKDLNFTHVLFKEFVHSMR--PSLNI 272 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 +S G W G A + LID + ++ Sbjct: 273 DEVSTGEHWFGTTALEKKLIDKIETSDDFI 302 >gi|254671315|emb|CBA08708.1| serine protease [Neisseria meningitidis alpha153] Length = 204 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 11/160 (6%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHV---EDNSPHVARIAIRGQIEDS-QELIERI---- 57 K I L LV L F N+PH A + + G+I + ++ ++++ Sbjct: 45 KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGM 104 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK---PVITEVHEMAASAGYLI 114 E ++ A A+++ +SPGGS F I+++K + PV +M AS Y I Sbjct: 105 EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI 164 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + A++ I A +S+VGSIGV+ K + Sbjct: 165 AAAADKIYADPSSIVGSIGVIGSSFDATGPDGKNRRETQG 204 >gi|255088643|ref|XP_002506244.1| predicted protein [Micromonas sp. RCC299] gi|226521515|gb|ACO67502.1| predicted protein [Micromonas sp. RCC299] Length = 342 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 103/232 (44%), Gaps = 12/232 (5%) Query: 34 NSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + PHV + G + S +E+ + + +++ L++ GG+ Sbjct: 5 DKPHVFVLQFFGDVRASQASNLREEVTAVLRSAKK-SRGDEVVLVLNTGGGTVTGYGLAA 63 Query: 88 RAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 + ++K+ +T ++AAS GY+++C ++ +VA+ +++GSIGV+ + P V L Sbjct: 64 AQLTRLKDAGIKLTICVEQVAASGGYMMACTADRLVASPFAVLGSIGVISEIPNVYERLK 123 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 K GV ++V + K +P ++ V+ + ++ F V + R P Sbjct: 124 KEGVEFQTVTAGKFKRTLTPTKKIEKADVEKSKADIEDVLTLFKTFVKQQR--PKLVIDE 181 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ G W GA+A K L D + ++V L L + I +K P Sbjct: 182 VATGETWFGADALKRDLCDELKTTDDVLLEL--LAAGREIFSVKYRPPQSGP 231 >gi|77465636|ref|YP_355139.1| serine peptidase [Rhodobacter sphaeroides 2.4.1] gi|77390054|gb|ABA81238.1| protein C. Serine peptidase. MEROPS family S49 [Rhodobacter sphaeroides 2.4.1] Length = 448 Score = 70.0 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 13/185 (7%) Query: 38 VARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 VA I + G + + L+ +I D S + + + S GG Sbjct: 86 VAVIEVTGTLVHRGGWIGQSSGTTSYEGLMAQITAAVADPSVRGIALEIDSYGGEVAGLF 145 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + I+ + KPV V E A SA Y I+ + IV T VGSIGVL + Sbjct: 146 DLADTIRAARAVKPVRAFVAEAALSAAYAIASQAERIVLPRTGAVGSIGVLLVHADFSQA 205 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + GV++ + + K + +P+ + +Q V++S F V+ R + Sbjct: 206 MADRGVAVTLIHAGRHKVDGNPYEALPEGVRADLQARVEASRGLFAETVAAGRGARLTRQ 265 Query: 205 LVLSD 209 L+ Sbjct: 266 QALAT 270 >gi|260757395|ref|ZP_05869743.1| clp protease:peptidase U7:Na+/H+ antiporter NhaA [Brucella abortus bv. 4 str. 292] gi|260667713|gb|EEX54653.1| clp protease:peptidase U7:Na+/H+ antiporter NhaA [Brucella abortus bv. 4 str. 292] Length = 708 Score = 70.0 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 84/203 (41%), Gaps = 12/203 (5%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDD 64 L ++ + + + G I +E+ D Sbjct: 470 LEFALPGLLKRLIPRRFRAVETEIPVVRLHGAIMTGGTSLRPTLSLASTAGILEKAFADK 529 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLISCASNIIV 122 A A+ +S++SPGG+ I+R I+ + +++K V V ++AAS GY+I+ A + I+ Sbjct: 530 HAPAVAISINSPGGAPVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEII 589 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A +S+VGSIGV+ L K+GV + + K PF + ++ ++ + Sbjct: 590 ADPSSIVGSIGVVSASFGFPELLKKIGVERRVYTAGSNKVTLDPFQPEKAEDIERLKALQ 649 Query: 183 DSSYHWFVRLVSESRNIPYDKTL 205 + F+ +V E R Sbjct: 650 LEIHATFIDMVKERRAASLATIP 672 >gi|144897349|emb|CAM74213.1| Periplasmic serine proteases (ClpP class) [Magnetospirillum gryphiswaldense MSR-1] Length = 173 Score = 69.6 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 4/150 (2%) Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 F KLGVS VK S + +P+A + + +D+ Y F ++ RN+ D Sbjct: 5 DFWPKLGVSWDGVKRGDNADMMSANHKFSPQAWERLNRSLDAIYADFTGKAAKGRNLAPD 64 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV---WQSLYALGVDQSIRKIKDWNPPKNYW 259 + L+ GRIW G++A+ GL+D +GG + + L L D + + + PK W Sbjct: 65 RMEELAKGRIWAGSDAQARGLVDALGGWDVAQAQVRELLKLAPDADLD-LVAYPKPKAPW 123 Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 K + L + + ++ + A Sbjct: 124 QKLAKMMGGGGGLAEDEGMRALLRLARVLA 153 >gi|145480043|ref|XP_001426044.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124393116|emb|CAK58646.1| unnamed protein product [Paramecium tetraurelia] Length = 292 Score = 69.6 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 90/266 (33%), Gaps = 9/266 (3%) Query: 35 SPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 V + I+G I ++ ++E S AL + ++S GG Y E + + I+ Sbjct: 11 QKTVLVLRIQGSINSQLVSKISHQLEN-YNKGSVIALGLIINSQGGCPYQVEVLSKKIKS 69 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 N P+ T E + Y + N A TS +G + FL G++ Sbjct: 70 YLNGLPLYTFATEQSLGNAYQLLQLGNKSYAQNTSKIGFTQMYKNKLNFADFLQNYGINT 129 Query: 153 KSVKSSPMKAEPS----PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 +SS + + + + + +R Sbjct: 130 FQYQSSQIVNHNFVVNSSIRGNSQQDMDYLDQYYGLKTKQVTDQCWTNRKEQIKINKDQL 189 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 + ++ G EAK +GL+D +G E+V Y I +N++ +K Sbjct: 190 ENNVFLGKEAKDLGLVDELGTYEKVLMQQYPKAKIIPINTEGKLTEYENWFNLFIKISQS 249 Query: 269 SSLLEDTIPLMKQTKVQ-GL-WAVWN 292 + + + ++ GL VW Sbjct: 250 RGFMGLVLLFGVKVMLKWGLIIYVWR 275 >gi|320108131|ref|YP_004183721.1| peptidase S49 [Terriglobus saanensis SP1PR4] gi|319926652|gb|ADV83727.1| peptidase S49 [Terriglobus saanensis SP1PR4] Length = 213 Score = 69.6 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 2/120 (1%) Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 Q +VD+ + F+ V+ R DK L L+ G++WTG +A + LID GG Sbjct: 96 PYQAYFQTLVDNMHGQFIHDVATGRGTSDDKILPLATGQVWTGQQAIGLHLIDKQGGFRV 155 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWN 292 I+ K+ +L + +L + L+ Q G + +W Sbjct: 156 ALMDTARDAGISGEPGIQRPVKIKHGLLSNLISGDADNLFPNPSKLLDQA--PGFYYMWK 213 >gi|126464115|ref|YP_001045228.1| peptidase S49 [Rhodobacter sphaeroides ATCC 17029] gi|126105926|gb|ABN78456.1| protein C. Serine peptidase. MEROPS family S49 [Rhodobacter sphaeroides ATCC 17029] Length = 451 Score = 69.6 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 13/185 (7%) Query: 38 VARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 VA I + G + + L+ +I D S + + + S GG Sbjct: 86 VAVIEVTGTLVHRGGWIGQSSGTTSYEGLMAQITAAVADTSVRGIALEIDSYGGEVAGLF 145 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + AI+ + KPV V E A SA Y I+ + IV T VGSIGVL + Sbjct: 146 DLADAIRAARAVKPVRAFVAEAALSAAYAIASQAERIVLPRTGAVGSIGVLLVHADFSQA 205 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + GV++ + + K + +P+ + +Q V++S F V+ R + Sbjct: 206 MADRGVAVTLIHAGRHKVDGNPYEALPEGVRADLQARVEASRALFAETVAAGRGARLSRQ 265 Query: 205 LVLSD 209 L+ Sbjct: 266 QALAT 270 >gi|332993012|gb|AEF03067.1| putative inner membrane peptidase [Alteromonas sp. SN2] Length = 342 Score = 69.6 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 113/254 (44%), Gaps = 18/254 (7%) Query: 30 HVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAG 83 + E+ + I +G ++ ++ E+ + +++D ++V L S GG + Sbjct: 89 NDEEEKSRLFVIDFKGSMDANEVEHLREEITAILCVANKEDE---VLVRLESGGGVVHGY 145 Query: 84 EAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 +Q++K + + V ++AAS GY+++C ++ ++A++ + +GSIGVL Q P Sbjct: 146 GLAASQLQRIKEKGLTLTIAVDKVAASGGYMMACVADKLLASQFAYIGSIGVLAQLPNFN 205 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L K V + + K + F E N + ++ ++ + F V R P Sbjct: 206 KLLKKNDVEFEQHTAGEYKRTLTVFGENNDEGRAKFKEEIEEIHTLFKDFVHSQR--PDM 263 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 ++ G W G +AK++GL+D + ++ S + R+I + Sbjct: 264 NIEKVATGEYWPGVKAKELGLVDALSTSDDYILSHF------PEREIFKVKYSLKKNVAE 317 Query: 263 LKNLSISSLLEDTI 276 LS++++ E + Sbjct: 318 KLGLSVAAVAERVV 331 >gi|187933709|ref|YP_001885481.1| Clp protease [Clostridium botulinum B str. Eklund 17B] gi|187721862|gb|ACD23083.1| Clp protease family protein [Clostridium botulinum B str. Eklund 17B] Length = 232 Score = 69.3 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 79/230 (34%), Gaps = 39/230 (16%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73 ++ + + ++I GQIE + +I ++ + ++D+ +++ L Sbjct: 29 FGNTTAVTPNKSIQVLSIIGQIEGHMVLPPQTKATRYEHIIPQLIDLEQNDNVKGILIVL 88 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 ++ GG AG AI I+ + KP ++ V S G ++ AS+ ++ + Sbjct: 89 NTVGGDVEAGLAIAEMIRSM--SKPTVSIVTGGGHSIGVPLATASDYSFITPSATMIVHP 146 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V + +M + + + Sbjct: 147 VRMNGFIIGVAQTF------------------------EYFKKMQERINEFITRTSHIKE 182 Query: 194 SESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 E +L+D G I G +A GLID VGG +E L L Sbjct: 183 EELEKFMLQTNELLNDVGTILIGKQAVDCGLIDEVGGIKEALSKLKELIK 232 >gi|303235964|ref|ZP_07322567.1| peptidase, S49 (protease IV) family protein [Prevotella disiens FB035-09AN] gi|302483837|gb|EFL46829.1| peptidase, S49 (protease IV) family protein [Prevotella disiens FB035-09AN] Length = 330 Score = 69.3 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 80/230 (34%), Gaps = 9/230 (3%) Query: 28 SSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSA 80 S +A + G + S++L E +++ + T + +++PGG A Sbjct: 91 FSDESLPENSIAYHRVWGVVLAQSNWYFSSKQLEEDLKQAENNPQITCHFLHINTPGGEA 150 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + + + ++ + E +A + + + Y + Sbjct: 151 WYMDRLSETLRNCNKPIITLCEQLCCSAGYYIGCHGQRVYGLTQNDMIGCIGTMCSFYDF 210 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI- 199 + + +++ ++ K+ Q +++V++ F+ V E R Sbjct: 211 EEYYKKLGITKVEAKATNSDLKNKMFDDLRKGKSEQYVREVLNPLCAQFLTEVREQRKAL 270 Query: 200 -PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + G + +EA+KVGLID EV +G + + ++ Sbjct: 271 ASLADDAPVLRGETFLSSEAEKVGLIDGCKTMIEVLAEAVTIGKEYAEKE 320 >gi|323454083|gb|EGB09953.1| hypothetical protein AURANDRAFT_12803 [Aureococcus anophagefferens] Length = 204 Score = 69.3 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 3/165 (1%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETS 127 +++ L+S GG+ + +VK+ +T ++AAS GY+++C + IVA+ + Sbjct: 42 VVLKLNSGGGTVTGYGLAAAQLMRVKDAGFKLTVCIEQVAASGGYMMACVGDRIVASPFA 101 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 ++GSIGV+ P V L K G+ ++V + K +P +V + + + + + Sbjct: 102 VLGSIGVISDIPNVYQRLKKEGIEFQTVTAGAYKRTLTPTKKVTKEDMDKSKQDIKEIFT 161 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 F V+ R P ++ G W G +A K L D + ++ Sbjct: 162 LFKTFVAGQR--PALDIDAVATGETWFGEDALKRRLCDELRTFDD 204 >gi|260898467|ref|ZP_05906963.1| putative protease SohB [Vibrio parahaemolyticus Peru-466] gi|308089023|gb|EFO38718.1| putative protease SohB [Vibrio parahaemolyticus Peru-466] Length = 294 Score = 68.9 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 12/203 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 S PH+ + G I+ +E+ + D +++ L S GG + Sbjct: 97 GSLDSKREPHLFVLDFNGSIDAKEVGSLREEITAILAVAREGDE---VLLRLESGGGMVH 153 Query: 82 AGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + ++K P+ V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P Sbjct: 154 GYGLASSQLDRIKAAGLPLTISVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPN 213 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K + + + + K + F E KA + ++ ++ F + E R P Sbjct: 214 FNKLLKKHDIEYEQLTAGEYKRTLTMFGENTDKARDKFKQELEETHVLFKDFIRERR--P 271 Query: 201 YDKTLVLSDGRIWTGAEAKKVGL 223 + ++ G W G +AK++GL Sbjct: 272 SLELEKVATGEHWFGTQAKELGL 294 >gi|323953763|gb|EGB49573.1| peptidase S49 [Escherichia coli H263] Length = 264 Score = 68.9 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 13/167 (7%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 L + GV I + S K + + F + + Q MQ +D++ F Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMF 242 >gi|300114839|ref|YP_003761414.1| peptidase S49 domain-containing protein [Nitrosococcus watsonii C-113] gi|299540776|gb|ADJ29093.1| Peptidase S49 domain protein [Nitrosococcus watsonii C-113] Length = 325 Score = 68.9 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 98/232 (42%), Gaps = 12/232 (5%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSA 80 + ++ + + G I + QE+ + + +D +++ L + GG Sbjct: 77 ARKKKQKHAKRIFVLDFHGDIRATAVASLRQEITAVLSVATPEDE---ILLRLENGGGLV 133 Query: 81 YAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + +++++ ++ V ++AAS GY+++C N I+AA +++GSIG L Q P Sbjct: 134 HEHGLAASQLERIRRKQIPLTIAVDKIAASGGYMMACVGNRIIAAPFAIIGSIGALLQVP 193 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 LDK G+ + +K+ +K + F + ++ + V+ + F + R Sbjct: 194 NFHRLLDKHGIDFEQIKAGELKRTVTLFGINTDRDRELAKQQVEDIHQLFKEFIVRHR-- 251 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 P+ + G+ W +AK++ LID + ++ + Sbjct: 252 PHIDLSQTATGQHWHAIQAKELNLIDDLETSDDYLTEACKTADLYKVTYTIK 303 >gi|323953809|gb|EGB49615.1| peptidase S49 [Escherichia coli H263] Length = 241 Score = 68.9 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 67/159 (42%), Gaps = 13/159 (8%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGILLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 L + GV I + S K + + F + + Q MQ Sbjct: 196 GHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQR 234 >gi|313157920|gb|EFR57326.1| peptidase, S49 (protease IV) family protein [Alistipes sp. HGB5] Length = 190 Score = 68.9 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 62/149 (41%) Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 IVA + +L GSIGV + L S + + P M+ Sbjct: 2 IVADKLTLTGSIGVFGMILDTREALKNKLGITIDGVQSNASSSFLATQPLTPVQRSMIMR 61 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 VD Y F V+E RN+P +K L ++ GR+W+GA+A +GLID GG + Sbjct: 62 GVDKVYTTFTNDVAEGRNLPIEKVLDIAGGRVWSGADALGIGLIDTYGGLKTAIALAVDK 121 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 ++ + + + +L++S Sbjct: 122 ADLGDNYRVTEVTETPTGFAAFIASLNMS 150 >gi|104641333|gb|ABF73019.1| plastid periplasmic serine protease IV protein precursor [Karenia brevis] Length = 461 Score = 68.9 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 31/254 (12%), Positives = 77/254 (30%), Gaps = 44/254 (17%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 E+ +++ + D + +I+++ + R+++ ++ E+ Sbjct: 139 SLSEVTLNLQKAAADPRISGVILNIKPLTCGWGKVSELVRSLKHFQSSGKFCMCYLEIMT 198 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP-- 166 +++ A ++ + GV + ++ L K GV + + K+ Sbjct: 199 EKEAVVAAACGESYMPPSAYISLTGVSLKGQFLGDVLRKAGVEPQIQRIGAYKSAGDQLQ 258 Query: 167 ------------------------------------------FSEVNPKAVQMMQDVVDS 184 + ++ Sbjct: 259 RGNMSTAQREVLNALADDVYEGMVCLLAELSNGTHSXEASADNRPYTEEEEAYVKANAQK 318 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 SY F + SR + + T ++ GR+WTG +AK GL+D +GG Sbjct: 319 SYTLFRDTAALSRGLAINATEAVAQGRVWTGRQAKGAGLVDALGGLWTAIALAKKAAKID 378 Query: 245 SIRKIKDWNPPKNY 258 ++ + ++ Sbjct: 379 GDVRVFEAGVRRSR 392 >gi|153840986|ref|ZP_01993380.1| secreted protease [Vibrio parahaemolyticus AQ3810] gi|149745539|gb|EDM56755.1| secreted protease [Vibrio parahaemolyticus AQ3810] Length = 192 Score = 68.5 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 83/183 (45%), Gaps = 7/183 (3%) Query: 101 TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160 V ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P L K + + + + Sbjct: 13 ISVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQIPNFNKLLKKHDIEYEQLTAGEY 72 Query: 161 KAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKK 220 K + F E KA + ++ ++ F + E R P + ++ G W G +AK+ Sbjct: 73 KRTLTMFGENTDKARDKFKQELEETHVLFKDFIRERR--PSLELEKVATGEHWFGTQAKE 130 Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 +GL+D + +++ + ++ + K L ++ + L + Sbjct: 131 LGLVDEISTSDDLVVAACKEKTVLAVHYV-----QKKKLADKLAGVASKVADSVVLKLAE 185 Query: 281 QTK 283 + + Sbjct: 186 RGQ 188 >gi|332141318|ref|YP_004427056.1| putative inner membrane peptidase [Alteromonas macleodii str. 'Deep ecotype'] gi|327551340|gb|AEA98058.1| putative inner membrane peptidase [Alteromonas macleodii str. 'Deep ecotype'] Length = 340 Score = 68.1 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 52/253 (20%), Positives = 110/253 (43%), Gaps = 18/253 (7%) Query: 31 VEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 + N + + +G ++ ++ E+ + +++D ++V L S GG + Sbjct: 88 EDANKSRLYVLDFKGSMDANEVEHLREEVTAILCVANKEDE---VLVRLESGGGVVHGYG 144 Query: 85 AIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q++K + + V ++AAS GY+++C ++ ++A++ + +GSIGVL Q P Sbjct: 145 LAASQLQRIKEKGLKLTIAVDKVAASGGYMMACVADKLLASQFAYIGSIGVLAQLPNFNK 204 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K + + + K + F E N + ++ ++ + F V R P Sbjct: 205 LLKKNDIEFEQHTAGEFKRTLTIFGENNDEGRAKFKEEIEEIHVLFKDFVQSQR--PDMN 262 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ G W G +AK +GL+D + ++ S Y R+I + Sbjct: 263 IDKVATGEYWPGIKAKTLGLVDEITTSDDYILSHY------PAREIFSVKYSVKKNVAEK 316 Query: 264 KNLSISSLLEDTI 276 +S +S++E Sbjct: 317 LGMSAASVVERVF 329 >gi|255017492|ref|ZP_05289618.1| hypothetical protein LmonF_06458 [Listeria monocytogenes FSL F2-515] Length = 112 Score = 68.1 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y+ FV++V++ R + ++ ++DGRI+ G +AK+ GLID G QE+ ++L Sbjct: 2 YNEFVKVVAQGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALEALKKEQGLAG 61 Query: 246 IRKIKDWNPPKNYWFCDLKNLSIS---SLLEDTIPLMKQTKVQGLWAVW 291 I+ P + IS + + I L K + ++ Sbjct: 62 ATVIQYDAPGDFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYLY 110 >gi|213581681|ref|ZP_03363507.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 107 Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 3/110 (2%) Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 MMQ ++ Y F+ LV+++R ++ ++ G +WTG +AK GL+D +G ++ Sbjct: 1 MMQLSIEYGYKRFITLVADARKRTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAK 60 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 L + + + +++ S + +P Q + Sbjct: 61 AAELAKL-KQWHLDYYQDEPTVLDMVMDSMTGS--VRAMLPEAIQAMLPA 107 >gi|220923762|ref|YP_002499064.1| peptidase S49 [Methylobacterium nodulans ORS 2060] gi|219948369|gb|ACL58761.1| peptidase S49 [Methylobacterium nodulans ORS 2060] Length = 300 Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 49/215 (22%), Positives = 85/215 (39%), Gaps = 18/215 (8%) Query: 38 VARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 VA I + G I + L ++ A+++ + SPGGS Sbjct: 74 VAVIPVIGPIFPRANMLTEMSGTGTSAAMLARDLQLARDSAEVGAVMLLVDSPGGSPTGI 133 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 A+ + ++ RK V+ V AASA Y I+ ++ +V +T ++GSIGV+ Sbjct: 134 NALADQLYAMRGRKRVVAHVSGSAASAAYWIASSAGELVTEKTGMLGSIGVVAAISKQVE 193 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 +SI+ V S+ P P ++ ++DS F+ V+ R + Sbjct: 194 PDASGSLSIEIVSSNAPNKRPDPQ---TEDGAAEIRALLDSIEAQFIADVARGRKTTPAR 250 Query: 204 TL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 G + GA+A G+ D V + + L Sbjct: 251 VRTNFGAGGMKVGADAVAAGMADRVQTYDFTLRDL 285 >gi|270667919|ref|ZP_06222488.1| protease IV [Haemophilus influenzae HK1212] gi|270316754|gb|EFA28517.1| protease IV [Haemophilus influenzae HK1212] Length = 259 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 3/109 (2%) Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 FS + + Q ++ Y F+ +VS+ R + + L+ G++W G++A + GL+D Sbjct: 6 FSPLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVDKLAQGQVWLGSDAFQNGLVDE 65 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 +G E L + ++D++ WF D IS+LL DT Sbjct: 66 IGSFNEAVNKAEQLVNQRQDTAVQDFSVE---WFTDDNVSLISTLLRDT 111 >gi|254519174|ref|ZP_05131230.1| peptidase S14 [Clostridium sp. 7_2_43FAA] gi|226912923|gb|EEH98124.1| peptidase S14 [Clostridium sp. 7_2_43FAA] Length = 246 Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 39/236 (16%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73 + + + + I GQIE + +I ++ + R+D+ +++ L Sbjct: 35 FGTDNGVAQDESIQILPIIGQIEGHQVLPAQSKSTKYEHVIPQLIAMERNDNVKGVLIIL 94 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 ++ GG AG AI I + I + S + + I + T +V I Sbjct: 95 NTVGGDVEAGLAIAEMINSLSKPTVSIVIGGGHSIGVPLATSSSYSFITPSATMIVHPIR 154 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + V + + + + ++ E+ Sbjct: 155 MNGFVIGVAQTFNYFQKMQERIDNFIVRTSKIKKDEL----------------------- 191 Query: 194 SESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 R + +L+D G I G +A + GLID GG ++ L L ++ +K Sbjct: 192 ---RQMMLKSDELLNDMGTILIGKQAVECGLIDEEGGIKDALNKLKELIGEKESKK 244 >gi|258611700|ref|ZP_05711610.1| peptidase [Listeria monocytogenes FSL R2-503] gi|258605514|gb|EEW18122.1| peptidase [Listeria monocytogenes FSL R2-503] Length = 193 Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 66/135 (48%), Gaps = 16/135 (11%) Query: 31 VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76 E + +A +++ G I+D+ + ++++E++ DD+ +++ ++SP Sbjct: 56 EEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLEQVRNDDNIQGVLLYVNSP 115 Query: 77 GGSAYAGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GG I I +++ + P + MAAS GY IS ++ I A++ +L GS+GV Sbjct: 116 GGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPADKIFASKETLTGSLGV 175 Query: 135 LFQYPYVKPFLDKLG 149 + Q + K+ Sbjct: 176 IMQGYDYSELMKKIR 190 >gi|167948600|ref|ZP_02535674.1| peptidase S49 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 141 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 10/139 (7%) Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY--DKTLVLS 208 + + + K PFS VN + +Q ++D + F+ V + R D+ L Sbjct: 9 ERRLMTAGEHKGILDPFSPVNDYEREHIQRMLDQLHAQFIETVKQGRGERLKVDEYPELF 68 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW--FCDLKNL 266 G W+G E K+GL+D G V + + I D+ P ++ W F + Sbjct: 69 SGLFWSGEEGLKIGLVDAFGSSSYVAREVIG------AEDIVDFTPEEDIWDRFAEKLGT 122 Query: 267 SISSLLEDTIPLMKQTKVQ 285 + + L + ++ Sbjct: 123 GAAQAIARMGGLTEGWSLR 141 >gi|297519281|ref|ZP_06937667.1| putative periplasmic protease [Escherichia coli OP50] Length = 176 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 8/183 (4%) Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 +AAS GY+++C ++ IV+A ++VGSIGV+ Q P FL + I+ + K + Sbjct: 2 VAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKDIDIELHTAGQYKRTLT 61 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 E + + ++ ++ ++ F V R P ++ G W G +A + GL+D Sbjct: 62 LLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLDIEQVATGEHWYGQQAVEKGLVD 119 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 + +EV SL R++ + + D S + + + Q + Sbjct: 120 EINTSDEVILSLME------GREVVNVRYMQRKRLIDRFTGSAAESADRLLLRWWQRGQK 173 Query: 286 GLW 288 L Sbjct: 174 PLM 176 >gi|99081464|ref|YP_613618.1| serine peptidase [Ruegeria sp. TM1040] gi|99037744|gb|ABF64356.1| protein C. Serine peptidase. MEROPS family S49 [Ruegeria sp. TM1040] Length = 315 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 73/212 (34%), Gaps = 19/212 (8%) Query: 39 ARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 A + + G I + I ++V + SPGG Sbjct: 79 AVVPMFGPIFPRASMINASSDGTSLNAFMRDIRVAQASTDVHRIVVVVDSPGGVVSGLGE 138 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 ++ KP+ V ASA Y + IV ++ VGSIGV+ + Sbjct: 139 ASETLRATT--KPITAFVTGNCASAAYWLCSQFGEIVMDRSAAVGSIGVVASLSRQEAAD 196 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 ++ S + V S+ P P + +Q +D+ F+ V+ R + D+ Sbjct: 197 NQGRRSYEIVSSNAPNKRPDPS---TEEGRTAIQKDIDAIEEVFIADVAAGRRVSADRVR 253 Query: 206 -VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 G + + A + G+ D +G E V Sbjct: 254 SDFGRGAMLSATRAIEAGMADRIGTLEGVLTE 285 >gi|294635994|ref|ZP_06714433.1| peptidase, S49 family [Edwardsiella tarda ATCC 23685] gi|291090671|gb|EFE23232.1| peptidase, S49 family [Edwardsiella tarda ATCC 23685] Length = 190 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 77/184 (41%), Gaps = 8/184 (4%) Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 ++AAS GY+++C ++ IVAA +++GSIGV+ Q P +L K V ++ + K Sbjct: 14 DKVAASGGYMMACVADRIVAAPFAIIGSIGVVAQIPNFNRWLKKNDVDVELHTAGEFKRT 73 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 + F E + +D ++ F + V R P ++ G W G +A + GL Sbjct: 74 LTLFGENTEAGREKFCQELDETHRLFKQFVQ--RQRPSLDVDAVATGEHWYGEQALEKGL 131 Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 +D + +++ + ++ + ++ + + + Q Sbjct: 132 VDELSTSDDLLIAEMEQA------EVIAVRYMRRKGLMARMGMAAAQGADSLLLRWWQRG 185 Query: 284 VQGL 287 + L Sbjct: 186 QRPL 189 >gi|239993633|ref|ZP_04714157.1| putative periplasmic protease [Alteromonas macleodii ATCC 27126] Length = 348 Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 96/211 (45%), Gaps = 12/211 (5%) Query: 31 VEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 E + I +G ++ ++ E+ + +++D ++V L S GG + Sbjct: 96 EEFEKSRLYVIDFKGSMDANEVEHLREEITAILCVANKEDE---VLVRLESGGGVVHGYG 152 Query: 85 AIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q++K + + V ++AAS GY+++C ++ ++A++ + +GSIGVL Q P Sbjct: 153 LAASQLQRIKEKGLKLTIAVDKVAASGGYMMACVADKLLASQFAYIGSIGVLAQLPNFNK 212 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K + + + K + F E N + ++ ++ + F V R P Sbjct: 213 LLKKNDIEFEQHTAGEFKRTLTVFGENNDEGRAKFKEEIEEIHILFKDFVQSQR--PDMD 270 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 ++ G W G +AK +GLID + ++ Sbjct: 271 IDKVATGEYWPGIKAKSLGLIDDITTSDDYI 301 >gi|323179198|gb|EFZ64768.1| head-tail preconnector protein GP5 domain protein [Escherichia coli 1180] Length = 225 Score = 66.6 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 63/149 (42%), Gaps = 13/149 (8%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 L + GV I + + K + + F + Sbjct: 196 GHLAQAGVDITLIYAGAHKVDGNQFEALP 224 >gi|146340583|ref|YP_001205631.1| hypothetical protein BRADO3628 [Bradyrhizobium sp. ORS278] gi|146193389|emb|CAL77405.1| conserved hypothetical protein; putative peptidase S49 domain [Bradyrhizobium sp. ORS278] Length = 289 Score = 66.6 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 52/212 (24%), Positives = 100/212 (47%), Gaps = 11/212 (5%) Query: 37 HVARIAIRGQIE--------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 +A I++ G + ++ ++ R + D ++I+ + SPGG+ Sbjct: 58 KIALISVSGPLTPRGSWYGSSLAQIAAQVARAAADADVGSIILDVDSPGGTVAGTAEAAA 117 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 A+ + RKP + V+ +AASA Y I+ ++ IV ++ VGSIG + + L+ Sbjct: 118 AVAEAAQRKPCVACVNTLAASAAYWIASQASEIVMTPSADVGSIGAMVMHVDYSKALEDA 177 Query: 149 GVSIKSVK--SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-L 205 G+++ ++ SP K E PF ++ +A +Q V+ + F+R V+ R + K Sbjct: 178 GITVTMIRSEQSPKKNEAHPFGPLSDEARANLQSRVNDAGADFIRAVASGRRVTQSKVKE 237 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 GR++ EA G++D + +E+ L Sbjct: 238 DFGQGRMFGAREAVARGMVDRISTFDELVSRL 269 >gi|301022675|ref|ZP_07186530.1| peptidase, S49 family protein [Escherichia coli MS 196-1] gi|299881171|gb|EFI89382.1| peptidase, S49 family protein [Escherichia coli MS 196-1] Length = 222 Score = 66.6 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 59/139 (42%), Gaps = 13/139 (9%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG A Sbjct: 76 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAG 135 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 136 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 195 Query: 143 PFLDKLGVSIKSVKSSPMK 161 L + GV I + + K Sbjct: 196 GHLAQAGVDITLIYAGAHK 214 >gi|304383386|ref|ZP_07365852.1| possible protease [Prevotella marshii DSM 16973] gi|304335554|gb|EFM01818.1| possible protease [Prevotella marshii DSM 16973] Length = 331 Score = 65.8 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 93/227 (40%), Gaps = 13/227 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSA 80 + +A + G + S++L + + + + ++SPGG A Sbjct: 92 FDDEQLPDNSIAYHRVWGTVMADSYYWFSSKQLAADLHAAEANPQISCHFLHINSPGGEA 151 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA-AETSLVGSIGVLFQYP 139 + + + ++ +KP++T +M SAGY I C N I A + VG IG + + Sbjct: 152 WYLDRLSETLRA--CQKPILTFYEQMCCSAGYYIGCHGNRIYALTDNDYVGCIGTMCSFY 209 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP-KAVQMMQDVVDSSYHWFVRLVSESRN 198 +P+ +KLG+ K++ + F ++ K + + D++D F+ V R+ Sbjct: 210 DFEPYFEKLGIKRVEAKATNSDLKNKTFDDLRHGKDEKFVHDILDPLNVQFLAEVRSQRS 269 Query: 199 IPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 + + G + +A ++GL D +E +G + Sbjct: 270 QLAELPDDAPVLRGETFYTPQAVELGLTDGSHTMQEAIAEAVTMGRE 316 >gi|281425071|ref|ZP_06255984.1| putative protease transmembrane protein [Prevotella oris F0302] gi|281400915|gb|EFB31746.1| putative protease transmembrane protein [Prevotella oris F0302] Length = 329 Score = 65.8 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 83/233 (35%), Gaps = 15/233 (6%) Query: 28 SSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSA 80 S + +A + G + S++L + + + + ++SPGG A Sbjct: 91 FSDEQLPDNSIAYHRVFGTVMADSYYWFSSKQLQSDLLAAEANPQISCHFLHINSPGGEA 150 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV--AAETSLVGSIGVLFQY 138 + + + ++ KP++T +M SAGY I C I + + Y Sbjct: 151 WYLDRLSETLR--SCEKPILTFYEQMCCSAGYYIGCHGQRIYAMTQNDYVGCIGTMCSFY 208 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + F +++ ++ + K Q +++++D F+ V R+ Sbjct: 209 DFEPYFAKLGIKKVEAKATNSDLKNKVFDDLRHGKDAQFVKEILDPMNVQFLDEVRSQRS 268 Query: 199 ---IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 D VL +T +A ++GL D E +G + + K Sbjct: 269 KLADLPDDVPVLRGETFYTP-QAVEIGLADGSRTMVEAIAEASTMGREYTEAK 320 >gi|212710697|ref|ZP_03318825.1| hypothetical protein PROVALCAL_01764 [Providencia alcalifaciens DSM 30120] gi|212686394|gb|EEB45922.1| hypothetical protein PROVALCAL_01764 [Providencia alcalifaciens DSM 30120] Length = 168 Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 2/153 (1%) Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 +++C +N IVAA S++GSIGV+ Q P + L K V ++ + K + E Sbjct: 1 MMACIANKIVAAPFSIIGSIGVVAQVPNIHRLLKKHDVDVELHTAGEYKRTLTMLGENTE 60 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 + + + ++S++ F V ++R P ++ G W G +A + GL+D +G ++ Sbjct: 61 QGRKKFVEDLNSTHELFKDFVHQNR--PSLDIAAVATGEYWYGTQALEKGLVDQIGVSDD 118 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 + SIR + + + ++ Sbjct: 119 LIIDAIETKEIVSIRFVMSKKMVERFTSSAAES 151 >gi|262365465|gb|ACY62022.1| peptidase family U7 protein [Yersinia pestis D182038] Length = 168 Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 75/176 (42%), Gaps = 8/176 (4%) Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 +++C ++ I+ A +++GSIGV+ Q P L K + ++ + K + F E Sbjct: 1 MMACVADRIICAPFAIIGSIGVVAQIPNFHRLLKKNDIDVELHTAGEFKRTLTLFGENTE 60 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 + + ++ ++ ++ F + V + R P ++ G W G +AK+ GL+D +G ++ Sbjct: 61 QGREKFREDLNETHLLFKQFVQQQR--PSLDIDAVATGEHWFGTQAKEKGLVDAIGTSDD 118 Query: 233 VWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + + + ++ + S + ++ + Q + L Sbjct: 119 LL--IAEM----DNHEVIGVRYSHRKRLIERFMGSATESVDSLLLRWWQRGEKPLL 168 >gi|298713144|emb|CBJ26900.1| putative periplasmic protease [Ectocarpus siliculosus] Length = 898 Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 80/197 (40%), Gaps = 6/197 (3%) Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCAS 118 + + ++V L SPGG + ++K+R +T ++AAS GY+I+C + Sbjct: 564 AHGNTTTDEVVVVLESPGGEVTEFGLAAARLARLKDRGFRLTVCVDKVAASGGYMIACIA 623 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + + A +++GSIGV+ L K GV S K+ PF EV + M Sbjct: 624 DELTTAPFAMLGSIGVVGGMTNFNKALKKYGVDYFHFTSGQHKSLVGPFQEVTKENKAMQ 683 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 Q +D+ + F V R P + G IW G A + L D V + L Sbjct: 684 QKQMDAIHSAFKTHVHRYR--PSVDIEAVGTGEIWLGQRAVDMRLADKVTT---AMEYLQ 738 Query: 239 ALGVDQSIRKIKDWNPP 255 D + +K Sbjct: 739 GRMTDAQVFLVKPHKKK 755 >gi|187735829|ref|YP_001877941.1| peptidase S49 [Akkermansia muciniphila ATCC BAA-835] gi|187425881|gb|ACD05160.1| peptidase S49 [Akkermansia muciniphila ATCC BAA-835] Length = 247 Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 77/221 (34%), Gaps = 27/221 (12%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSA 66 +F + I + G + Q +++ I+ + + Sbjct: 31 FDFSFFIQTRQKARVIGSSLVIDVIGPLYGDGVPLNEVLGGTNYQSIVKEIKGAA--GNI 88 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 ++ SPGG I+ + + V M SA Y ++ A + +V ET Sbjct: 89 DEVVFIFDSPGGDVQGCHETAELIKSLPVE--TVAYVKGMCCSAAYYLASACDQVVVTET 146 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 +LVGSIG + K + +V P + +N +A+ +D+ + Sbjct: 147 ALVGSIGTVISLWNAKSEEILTITNDDAVFKH-------PETPMNTEAIAYYRDLCNKIA 199 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 F V+ R G+++ +A +GLID V Sbjct: 200 GRFQEFVASGRPGLSADA---FSGKVFVAEDAVSLGLIDDV 237 >gi|145499263|ref|XP_001435617.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124402751|emb|CAK68220.1| unnamed protein product [Paramecium tetraurelia] Length = 243 Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 89/240 (37%), Gaps = 14/240 (5%) Query: 36 PHVARIAIRGQIEDSQELIERIERISRD---DSATALIVSLSSPGGSAYAGEAIFRAIQK 92 + RI I+ I +L + I + A L V + GGS + I +QK Sbjct: 5 NRIIRINIQRPITS--KLTQLIRNQLENFSFYQAKVLAVQIDCQGGSVVQAKQIQYLLQK 62 Query: 93 VKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 ++ P++ ++ +I ++ I+AA S +G Q + + + + Sbjct: 63 FAQKQKLPILCFAGAQVYNSANIILSCADKIIAANNSEIGDYTFSGQLWNISELIKRENL 122 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP-------YDK 203 + ++ K +PF + + + + ++ + ++ + + D Sbjct: 123 EVINLSHGKYKDRLNPFQPYKETDKEWLNNSMKNNEIELKKQITLNLSKKFINLHEQTDC 182 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 I TG +A+K+ ++D +G +E QS Y K + +N + + Sbjct: 183 LNEAFQSSILTGYQAQKLKIVDEIGTIDEYLQSNYKNMKTIEFFKPQAYNIQQEIIEKLI 242 >gi|330946509|gb|EGH47542.1| putative inner membrane peptidase [Pseudomonas syringae pv. pisi str. 1704B] Length = 189 Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 78/195 (40%), Gaps = 7/195 (3%) Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + P+ + ++AAS GY+++C N I++A +++GSIGV+ Q P V L K + + Sbjct: 2 QAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQLPNVNRLLKKHDIDFE 61 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 + + K + F E K + Q +D ++ F V+ R P ++ G +W Sbjct: 62 VLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASYR--PQLSIDEVATGEVW 119 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273 G A L+D + +E + + + + + +S + Sbjct: 120 LGMAAVDKLLVDELKTSDEYLAERAKDADVFHLHYV-----QRKSLQERMGMAAATSADQ 174 Query: 274 DTIPLMKQTKVQGLW 288 + Q W Sbjct: 175 LVTKWWGRLTQQRFW 189 >gi|254671316|emb|CBA08710.1| signal peptide peptidase SppA, 36K type [Neisseria meningitidis alpha153] Length = 129 Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 56/135 (41%), Gaps = 10/135 (7%) Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD--KTLVL 207 + + + K PFS P+ ++ ++++ + F++ V R + + Sbjct: 1 MKRRVKIAGSNKGMGDPFSPETPEQSKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDV 60 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY--WFCDLKN 265 GR++TGA+A KVGL+D +G V + + + D+ P ++ Sbjct: 61 FSGRVYTGADALKVGLVDGLGNIYSVARDVVK------APDVVDYTPKDDFGRILGRRFG 114 Query: 266 LSISSLLEDTIPLMK 280 + + + + + ++ Sbjct: 115 AELKASVREALQAVR 129 >gi|330902693|gb|EGH33708.1| putative inner membrane peptidase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 193 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 78/195 (40%), Gaps = 7/195 (3%) Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + P+ + ++AAS GY+++C N I++A +++GSIGV+ Q P V L K + + Sbjct: 6 QAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQLPNVNRLLKKHDIDFE 65 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 + + K + F E K + Q +D ++ F V+ R P ++ G +W Sbjct: 66 VLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASYR--PQLSIDEVATGEVW 123 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE 273 G A L+D + +E + + + + + +S + Sbjct: 124 LGMAAVDKLLVDELKTSDEYLAERAKDADVFHLHYV-----QRKSLQERMGMAAATSADQ 178 Query: 274 DTIPLMKQTKVQGLW 288 + Q W Sbjct: 179 LATKWWGRLTQQRFW 193 >gi|27311191|ref|NP_758917.1| ORF24 [Vibrio phage VHML] gi|26891711|gb|AAN12323.1| ORF24 [Vibrio phage VHML] Length = 426 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 75/197 (38%), Gaps = 8/197 (4%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGS--AYAGEAIFRAIQKVKNRKPVITEV 103 I + + + D + G A + ++ K +T V Sbjct: 87 PITSYELIRHDYDTALNDPGVQ-IDRHGDLTHGGGEAAGCYDLAPSLLSAPGVKRPVTRV 145 Query: 104 HEMAASAG---YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160 S Y ++C + + ++ GSIGV+ + K+G+SI V Sbjct: 146 SLENESCYSAAYALACCCDQVFLTSSAGAGSIGVICGRLDQTEYNRKMGLSIAVVS-GDY 204 Query: 161 KAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKK 220 KA+ SP ++ Q +Q ++ F LV+E+R + ++ L G +TG A Sbjct: 205 KADFSPHKVLSDDERQRLQALIVQLGSEFHNLVAEARGMTAEQVKALKAGC-FTGRXAVD 263 Query: 221 VGLIDVVGGQEEVWQSL 237 GL D V Q+E + L Sbjct: 264 NGLADGVMSQDEFYNYL 280 >gi|255524218|ref|ZP_05391177.1| peptidase S14 ClpP [Clostridium carboxidivorans P7] gi|296185339|ref|ZP_06853749.1| Clp protease [Clostridium carboxidivorans P7] gi|255512043|gb|EET88324.1| peptidase S14 ClpP [Clostridium carboxidivorans P7] gi|296050173|gb|EFG89597.1| Clp protease [Clostridium carboxidivorans P7] Length = 229 Score = 63.9 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 77/222 (34%), Gaps = 41/222 (18%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 + E N + + I GQIE + +I ++ I D + L++ L++ G Sbjct: 28 NNEKNKDKIQVLPIIGQIEGHMILPPQSKSTKYEHVIPQLINIENDQNIEGLLIVLNTVG 87 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G AG AI I+ + KP ++ V S G ++ A++ + ++ + + Sbjct: 88 GDVEAGLAIAEMIRSL--SKPTVSLVIGGGHSIGVPLATAADYSFISPSATMIIHPIRMN 145 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + + +++ +V Sbjct: 146 ----------------GLVIGVPQTFEYFNKMQERITEFIVRTSKIKREQVQKLMV---- 185 Query: 198 NIPYDKTLVLSD--GRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 +T L + G I G +A + GLID VGG + + L Sbjct: 186 -----QTDELLNDMGTILIGEQAVEAGLIDQVGGISDAIKKL 222 >gi|254479114|ref|ZP_05092466.1| Clp protease [Carboxydibrachium pacificum DSM 12653] gi|214034963|gb|EEB75685.1| Clp protease [Carboxydibrachium pacificum DSM 12653] Length = 238 Score = 63.9 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 60/197 (30%), Gaps = 25/197 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ I + S ++V L++ GG AG AI I + I + Sbjct: 64 EHIIPQLVAIEENPSIKGVLVLLNTVGGDVEAGLAIAEMIASLSKPTVSIVLGGGHSIGV 123 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +S + IV + T + I + V D + Sbjct: 124 PLAVSANYSYIVPSATMTIHPIRMTGLVVGVPQTFDYFNKMQDRIV-------------- 169 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + G I G EA GLID +GG Sbjct: 170 ------EFIVRNSKIKRETFMSLMLKTGELANDI-----GTILVGKEAVDYGLIDEIGGI 218 Query: 231 EEVWQSLYALGVDQSIR 247 +E + L+ L ++ + Sbjct: 219 KEALKKLHKLIEEREKK 235 >gi|145507772|ref|XP_001439841.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124407036|emb|CAK72444.1| unnamed protein product [Paramecium tetraurelia] Length = 251 Score = 63.9 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 82/202 (40%), Gaps = 14/202 (6%) Query: 77 GGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 GS + I AI+ + P+ T + ++ + + A+E S++G G Sbjct: 52 EGSFVQSKNIATAIRNYAKYYKVPLYTFGEDFVLNSSVYLMTVGDKNFASEYSVIGDFGY 111 Query: 135 LFQYPYVKPFLDKLGVSIK---------SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 + + K ++ LG+ + S K + SP+ ++ + V+ ++ + Sbjct: 112 VQRRLGYKQLIENLGMQYHKIIIIREHKFIHSGEKKVKLSPYDDLKEEDVKWIEGQLKHR 171 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ-SLYALGVDQ 244 + ++RN D+ + + + TG +A K GL+D +G +++ + + Sbjct: 172 ESRLKEEIMQNRNQKVDQ--EMWNQTLLTGQQALKYGLVDGLGVFDDIREQEYKGMKSYD 229 Query: 245 SIRKIKDWNPPKNYWFCDLKNL 266 + + D+ P N F ++ Sbjct: 230 ILSNLLDYYVPANATFSSYLSI 251 >gi|20807828|ref|NP_622999.1| protease subunit of ATP-dependent Clp protease [Thermoanaerobacter tengcongensis MB4] gi|20516388|gb|AAM24603.1| Protease subunit of ATP-dependent Clp proteases [Thermoanaerobacter tengcongensis MB4] Length = 239 Score = 63.5 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 60/197 (30%), Gaps = 25/197 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ I + S ++V L++ GG AG AI I + I + Sbjct: 65 EHIIPQLVAIEENPSIKGVLVLLNTVGGDVEAGLAIAEMIASLSKPTVSIVLGGGHSIGV 124 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +S + IV + T + I + V D + Sbjct: 125 PLAVSANYSYIVPSATMTIHPIRMTGLVVGVPQTFDYFNKMQDRIV-------------- 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + G I G EA GLID +GG Sbjct: 171 ------EFIVRNSKIKRETFMSLMLKTGELANDI-----GTILVGKEAVDYGLIDEIGGI 219 Query: 231 EEVWQSLYALGVDQSIR 247 +E + L+ L ++ + Sbjct: 220 KEALKKLHKLIEEREKK 236 >gi|300854510|ref|YP_003779494.1| putative protease [Clostridium ljungdahlii DSM 13528] gi|300434625|gb|ADK14392.1| predicted protease [Clostridium ljungdahlii DSM 13528] Length = 221 Score = 63.5 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 72/223 (32%), Gaps = 37/223 (16%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 +V + ++ + I GQIE + +I + I D L+V L++ G Sbjct: 21 NVAEGRDNIQILPIIGQIEGHVNLSSETKTTKYEHVIPNLIAIENDKRVEGLLVVLNTVG 80 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G AG AI I+ + + + + + I + T ++ I + Sbjct: 81 GDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGVPLATASDYSFISPSATMIIHPIRMSGM 140 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 V + + + ++ ++ +Q + + D Sbjct: 141 VIGVPQTFEYFNKMQERINEFIVRTSKITGEKLTELMLQTDELLNDM------------- 187 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 G I G +A + GLID VGG + L + Sbjct: 188 ------------GTILIGKQAVEQGLIDEVGGISQAINKLNEM 218 >gi|158320570|ref|YP_001513077.1| peptidase S14 ClpP [Alkaliphilus oremlandii OhILAs] gi|158140769|gb|ABW19081.1| peptidase S14 ClpP [Alkaliphilus oremlandii OhILAs] Length = 245 Score = 63.1 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 75/232 (32%), Gaps = 37/232 (15%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73 + + + + + I GQIE + +I ++ + D L+V L Sbjct: 39 FGVNDLPQSDKSIYTMNIIGQIEGHMIAAPQNKSTKYEHIIPQLVAVEEDPKIKGLLVIL 98 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 ++ GG AG AI I + KP +T V S G ++ A + A T+ + Sbjct: 99 NTMGGDVEAGLAIAELIGSL--SKPTVTLVIGGGHSIGVPLATAGDYSFIAPTATMTIHP 156 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + + F ++ + + + + F L+ Sbjct: 157 IRMNGLVIGIP-----------------QTFRYFLKMQERIINFVLRTSNVERETFTSLM 199 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 + L G I G EA GLID VGG L L + Sbjct: 200 NA------TDELANDVGTILIGEEAVHHGLIDEVGGLNSAISKLKDLIRENE 245 >gi|307565406|ref|ZP_07627895.1| peptidase, S49 (protease IV) family protein [Prevotella amnii CRIS 21A-A] gi|307345856|gb|EFN91204.1| peptidase, S49 (protease IV) family protein [Prevotella amnii CRIS 21A-A] Length = 274 Score = 63.1 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 78/225 (34%), Gaps = 13/225 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSA 80 + +A + G + S++L + + + + ++SPGG A Sbjct: 36 FDDEQLPDNSIAYHRVFGTVMAESYWWFSSKQLEADLLAAEANPQISCHFLHINSPGGEA 95 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV--AAETSLVGSIGVLFQY 138 + + + ++ +KP++T +M SAGY I C N I + Y Sbjct: 96 WYLDRLSETLR--NCKKPILTFYEKMCCSAGYYIGCHGNRIYALTENDYAGCIGTMCSFY 153 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + F +++ ++ + + K +Q++++ F+ V R Sbjct: 154 DFEDYFAKLGIKKVEAKATNSDLKNKTFDDLRHGKDEAFVQNILNPLNAQFLAEVRGQRK 213 Query: 199 IPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 + + G + +A ++GL D E +G Sbjct: 214 SLAELPDDAPVLRGETFYTPKAVEIGLADGSKTMAEAVAEAMTMG 258 >gi|325268614|ref|ZP_08135244.1| S49 family peptidase [Prevotella multiformis DSM 16608] gi|324989142|gb|EGC21095.1| S49 family peptidase [Prevotella multiformis DSM 16608] Length = 329 Score = 63.1 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 81/232 (34%), Gaps = 13/232 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSA 80 S + +A + G + S++L + + + + ++SPGG A Sbjct: 91 FSDEQLPDNSIAYHRVFGIVMADSYYWFSSKQLQSDLLAAEANPQISCHFLHINSPGGEA 150 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV--AAETSLVGSIGVLFQY 138 + + + ++ KP++T +M SAGY I C I + + Y Sbjct: 151 WYLDRLSETLR--SCEKPILTFYEQMCCSAGYYIGCHGQRIYAMTQNDYVGCIGTMCSFY 208 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + F +++ ++ + K + +++++D F+ V R+ Sbjct: 209 DFEPYFAKLGIKKVEAKATNSDLKNKVFDDLRHGKDAKFVKEILDPMNVQFLDEVRSQRS 268 Query: 199 I--PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + G + +A ++GL D E +G + + K Sbjct: 269 KLADLPDDAPVLRGETFYTPQAVEIGLADGSRTMVEAISEASTMGREYTEAK 320 >gi|303274683|ref|XP_003056657.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461009|gb|EEH58302.1| predicted protein [Micromonas pusilla CCMP1545] Length = 848 Score = 63.1 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 87/189 (46%), Gaps = 6/189 (3%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETS 127 +++ L++ GG+ + ++++ +T ++AAS GY+++C ++ +VA+ + Sbjct: 565 VVLVLNTGGGTVTGYGLAAAQLTRIRDAGIKLTICVEQVAASGGYMMACVADRLVASPFA 624 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 ++GSIGV+ + P + L K G+ +++ + K +P ++ V+ ++ Sbjct: 625 VLGSIGVISEVPNLYERLKKEGIEFQTITAGKFKRTLTPTKKIEKADVEKSTRDIEDVLT 684 Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F V R P ++ G W G +A GL D + ++V L L D Sbjct: 685 LFKGFVKSQR--PGLDIDDVATGETWFGEDAMNKGLCDALQTTDDV---LLQLLSDGKEI 739 Query: 248 KIKDWNPPK 256 + PP+ Sbjct: 740 FSVKYAPPR 748 >gi|330883334|gb|EGH17483.1| putative inner membrane peptidase [Pseudomonas syringae pv. glycinea str. race 4] Length = 178 Score = 63.1 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 7/185 (3%) Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 ++AAS GY+++C N I++A +++GSIGV+ Q P V L K + + + + K Sbjct: 1 DKVAASGGYMMACIGNKIISAPFAILGSIGVVAQLPNVNRLLKKHDIDFEVLTAGEYKRT 60 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 + F E K + Q +D ++ F VS R P ++ G +W G A L Sbjct: 61 LTVFGENTEKGREKFQQDLDITHDLFKNFVSSYR--PQLSIDEVATGEVWLGMAAVDKLL 118 Query: 224 IDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 +D + +E + + + + + +S + + Sbjct: 119 VDELKTSDEYLAERAKDADVFHLHYV-----QRKSLQERMGMAAATSADQLATKWWGRLT 173 Query: 284 VQGLW 288 Q W Sbjct: 174 QQRFW 178 >gi|326532262|dbj|BAK05060.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 169 Score = 62.7 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 2/112 (1%) Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 + P ++ + ++Y F + SR++ D+ + GR+W+G +A GL+D Sbjct: 11 QRPLRPDEAELFEKSAQNAYASFRDKAAMSRSMGIDQMENFAQGRVWSGQDAASRGLVDS 70 Query: 227 VGGQEEVWQSLYALGVDQSIRKI--KDWNPPKNYWFCDLKNLSISSLLEDTI 276 +GG + +K+ + + L + S L D + Sbjct: 71 LGGFSQALAIAKQRAKIPQDKKVRLVEISKASPTLPEILSGIGGSILGVDRV 122 >gi|218507288|ref|ZP_03505166.1| peptidase S49 [Rhizobium etli Brasil 5] Length = 159 Score = 62.7 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 71/160 (44%), Gaps = 10/160 (6%) Query: 14 MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-EDSQELIERIERISRDDSATALIVS 72 M+++++ + +S V+ I G ++ + D S A++++ Sbjct: 1 MIAVISFFGIVAQHASQVD---------DISGPGGTSTERVANSYRAAKSDPSVKAIVIN 51 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 SPGG+ + + I + KPVI +V+ + ASA Y ++ + + IV ++ GSI Sbjct: 52 FDSPGGNVSGVQVLADEIFNGRGDKPVIAQVNSLCASAAYWVASSCDEIVMTPGAMAGSI 111 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 GV + V +D G+ + + K E + F ++ Sbjct: 112 GVYSLHQDVSRAVDAAGLKFTFISAGKYKVEGNAFEPLSD 151 >gi|225416613|ref|ZP_03761802.1| hypothetical protein CLOSTASPAR_05837 [Clostridium asparagiforme DSM 15981] gi|225041859|gb|EEG52105.1| hypothetical protein CLOSTASPAR_05837 [Clostridium asparagiforme DSM 15981] Length = 293 Score = 62.7 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 37/216 (17%) Query: 37 HVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 + I I G++E ++ ++ +I DD+ L+V L++ GG AG Sbjct: 98 KIHLITIIGEVEGHENLSGNSKATKYDHVLPQLAQIEDDDTVDGLLVLLNTSGGDVDAGL 157 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 AI I + + + +S + IV + T ++ + + Sbjct: 158 AIAEMIASLSMPTVSLVLGGSHSIGVPLAVSTNYSFIVPSGTMMIHPVRMSGMVIGSSQT 217 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + + + + + ++ D Sbjct: 218 YEYFAMIEDRILNFVESHARIAYDQLKELMHNTEMLTRDL-------------------- 257 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 G + G EA + GLID VGG +E LY + Sbjct: 258 -----GTVLVGKEAVEAGLIDEVGGIKEALHKLYQM 288 >gi|260890124|ref|ZP_05901387.1| hypothetical protein GCWU000323_01286 [Leptotrichia hofstadii F0254] gi|260860147|gb|EEX74647.1| protease IV [Leptotrichia hofstadii F0254] Length = 286 Score = 62.7 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 101/257 (39%), Gaps = 25/257 (9%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWS-------------------SHVEDNSPHVARI 41 M F+LK + +ML L + + V+ VA Sbjct: 1 MMFILKMLLEIVIMLILCVILNLILVKKILRVKNKKKLPLKKIKTVVFDVKKLKEDVAMP 60 Query: 42 AIRG-QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI 100 A++G + ++++ + ++ D + +I+ + + E I + K+K K V+ Sbjct: 61 ALKGKEKLSYYQILQGLNNLAEDKNIKKVIIDVDKLNLTLSQLEEISKIFDKIKKNKEVV 120 Query: 101 TEVHEMAASAGYLISCASNIIVA-AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 S A I + S + G L + Y+K FL+K G+ + + Sbjct: 121 AIGTLFEESRYREALLADKIFMFDTRQSTIIFRGYLHKEFYLKSFLEKFGIRMNVLHIGD 180 Query: 160 MKA--EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 K E ++++ + + ++++ D + FV LV R + + +LS I+ G Sbjct: 181 YKVAGEKYSHNQMSEEKKESIKNIKDKVFEDFVELVKSKRGVDIEN-EILSGNLIFAGKK 239 Query: 217 EAKKVGLIDVVGGQEEV 233 +A + LID V +E+ Sbjct: 240 KALEYKLIDGVADYDEI 256 >gi|289578373|ref|YP_003477000.1| peptidase S14 ClpP [Thermoanaerobacter italicus Ab9] gi|297544650|ref|YP_003676952.1| peptidase S14 ClpP [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528086|gb|ADD02438.1| peptidase S14 ClpP [Thermoanaerobacter italicus Ab9] gi|296842425|gb|ADH60941.1| peptidase S14 ClpP [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 233 Score = 62.7 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 54/187 (28%), Gaps = 25/187 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ I + + +++ L++ GG AG AI I + I + Sbjct: 62 EHIIPQLVAIEENPNIKGVLILLNTVGGDVEAGLAIAEMIASLSKPTVSIVLGGGHSIGV 121 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +S + IV + T + I + V D + Sbjct: 122 PLAVSANYSYIVPSATMTIHPIRMTGMVVGVPQTFDYFNKMQDRIV-------------- 167 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + G I G EA GLID +GG Sbjct: 168 ------EFIVRNSKIKRETFMELMLKTGELANDI-----GTILVGKEAVDYGLIDEIGGI 216 Query: 231 EEVWQSL 237 +E L Sbjct: 217 KEALNML 223 >gi|167040270|ref|YP_001663255.1| peptidase S14, ClpP [Thermoanaerobacter sp. X514] gi|256750804|ref|ZP_05491689.1| peptidase S14 ClpP [Thermoanaerobacter ethanolicus CCSD1] gi|300914354|ref|ZP_07131670.1| peptidase S14 ClpP [Thermoanaerobacter sp. X561] gi|307724410|ref|YP_003904161.1| peptidase S14 ClpP [Thermoanaerobacter sp. X513] gi|166854510|gb|ABY92919.1| peptidase S14, ClpP [Thermoanaerobacter sp. X514] gi|256750387|gb|EEU63406.1| peptidase S14 ClpP [Thermoanaerobacter ethanolicus CCSD1] gi|300889289|gb|EFK84435.1| peptidase S14 ClpP [Thermoanaerobacter sp. X561] gi|307581471|gb|ADN54870.1| peptidase S14 ClpP [Thermoanaerobacter sp. X513] Length = 238 Score = 62.7 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 55/187 (29%), Gaps = 25/187 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ I + + +++ L++ GG AG AI I + I + Sbjct: 63 EHIIPQLVAIEENPNIKGVLILLNTVGGDVEAGLAIAEMIASLSKPTVSIVLGGGHSIGV 122 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +S + IV + T + I + V D + Sbjct: 123 PLAVSANYSYIVPSATMTIHPIRMTGLIVGVPQTFDYFNKMQDRIV-------------- 168 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + G I G EA GLID +GG Sbjct: 169 ------EFIVRNSKIKRDTFMKLMLKTGELANDI-----GTILVGKEAVDYGLIDEIGGI 217 Query: 231 EEVWQSL 237 +E + L Sbjct: 218 KEALKRL 224 >gi|167037609|ref|YP_001665187.1| peptidase S14, ClpP [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|307264928|ref|ZP_07546490.1| peptidase S14 ClpP [Thermoanaerobacter wiegelii Rt8.B1] gi|320116024|ref|YP_004186183.1| peptidase S14 ClpP [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326389423|ref|ZP_08210990.1| peptidase S14 ClpP [Thermoanaerobacter ethanolicus JW 200] gi|166856443|gb|ABY94851.1| peptidase S14, ClpP [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|306920186|gb|EFN50398.1| peptidase S14 ClpP [Thermoanaerobacter wiegelii Rt8.B1] gi|319929115|gb|ADV79800.1| peptidase S14 ClpP [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325994428|gb|EGD52853.1| peptidase S14 ClpP [Thermoanaerobacter ethanolicus JW 200] Length = 238 Score = 62.3 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 55/187 (29%), Gaps = 25/187 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ I + + +++ L++ GG AG AI I + I + Sbjct: 63 EHIIPQLVAIEENPNIKGVLILLNTVGGDVEAGLAIAEMIASLSKPTVSIVLGGGHSIGV 122 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +S + IV + T + I + V D + Sbjct: 123 PLAVSANYSYIVPSATMTIHPIRMTGLIVGVPQTFDYFNKMQDRIV-------------- 168 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + G I G EA GLID +GG Sbjct: 169 ------EFIVRNSKIKRDTFMKLMLKTGELANDI-----GTILVGKEAVDYGLIDEIGGI 217 Query: 231 EEVWQSL 237 +E + L Sbjct: 218 KEALKRL 224 >gi|145552723|ref|XP_001462037.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124429874|emb|CAK94664.1| unnamed protein product [Paramecium tetraurelia] Length = 310 Score = 62.3 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 93/235 (39%), Gaps = 14/235 (5%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHE 105 + +++ ++ + ++ L++S++S G + + A Q+ P T + Sbjct: 34 SSATKILFQLRKHIQEKP-KVLMLSINSAYGDITQAQIVAEAFQQAAQNLDAPFYTFIDC 92 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 A + Y ++ + A SL+G + + + L+ ++ + KS Sbjct: 93 YALGSAYYLASCGTEVYANPFSLIGEVQPSKRSIGFQNVLENFKINYR--KSRRETILLD 150 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 F++V+ K +Q + V + + + + + ++R + +I+T +A + GLID Sbjct: 151 AFTKVSEKQLQFVNKEVQTEFQFALDQIKQNRAGK---IKKFEESKIYTAQQALENGLID 207 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 + +EV L K ++ K+ + + +E+ + + Sbjct: 208 DICTFDEV------LAKKYPKYKFRELTLYKDESSMIIVQGQLHLAIENLLTKFE 256 >gi|126732642|ref|ZP_01748439.1| Peptidase S49 [Sagittula stellata E-37] gi|126706926|gb|EBA05995.1| Peptidase S49 [Sagittula stellata E-37] Length = 323 Score = 62.3 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 74/210 (35%), Gaps = 19/210 (9%) Query: 36 PHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 A + + G I ++ + +S +++ + SPGG Sbjct: 79 DGTAVVPVFGTIFPRASMLGASTGGTALSSIMADMRVAWATESVERIVMLVDSPGGVVSG 138 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 A++ + KP+ V + ASA Y ++ + IV +++VGSIGVL + Sbjct: 139 LGEAAEALRA--SPKPITAFVTGIGASAAYWLASQAQEIVLDRSAMVGSIGVLATTSRQE 196 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 S + S P P + +Q VD+ FV V+ R + Sbjct: 197 GPDASGRRSYEITSSGAPLKRPDPS---TDEGRAAIQRDVDALEAVFVADVAAGRRVKAS 253 Query: 203 KTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231 G + EA G+ D VG E Sbjct: 254 TVRSEFGRGAMVVAEEAVAAGMADRVGTLE 283 >gi|291563562|emb|CBL42378.1| Protease subunit of ATP-dependent Clp proteases [butyrate-producing bacterium SS3/4] Length = 224 Score = 62.3 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 79/225 (35%), Gaps = 37/225 (16%) Query: 32 EDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGS 79 E+N + ++I G+IE + ++ + ++ D+ +++ +++ GG Sbjct: 25 EENGKRIHLLSIIGEIEGHDNLSGSTKTTKYEHILPELAKVESDEKIGGVLILVNTIGGD 84 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 G A+ I + KP ++ V + S G ++ AS+ T + V Sbjct: 85 VSCGLALAEMIASL--SKPTVSLVIGDSHSIGVPLAVASDYSFIVPTGTMLVHPVRMSGM 142 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + A+ + E+ + + ++ + + + Sbjct: 143 VI------------------GTAQTYEYFEMIEERIISFVSEHSRIDREKMKRLMHNTKM 184 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 G + G EA + GLID GG + + L AL + Sbjct: 185 LTKDL-----GTVLVGKEAVECGLIDGEGGIRDAIEKLNALIKND 224 >gi|182417555|ref|ZP_02948881.1| Clp protease [Clostridium butyricum 5521] gi|237668635|ref|ZP_04528619.1| Clp protease family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378568|gb|EDT76096.1| Clp protease [Clostridium butyricum 5521] gi|237656983|gb|EEP54539.1| Clp protease family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 241 Score = 62.3 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 39/228 (17%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73 ++ V + + + +++ GQIE + +I ++ I ++DS +++ L Sbjct: 37 FGNTAVANPNRDIVVLSVIGQIEGHSVLPPQTKATKYEHIIPQLIEIEQNDSVKGVLIVL 96 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 ++ GG AG AI I + I + S + I + T +V + Sbjct: 97 NTVGGDVEAGLAIAEMINSMSKPTVSIVIGGGHSIGVPLATSSDFSFITPSATMIVHPVR 156 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + + + + + ++ + Sbjct: 157 MNGFVIGIAQTFEYFKKMQERINDFIVRTSNIKSETLE---------------------- 194 Query: 194 SESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +L+D G + G +A GLID VGG E + L L Sbjct: 195 ----KFMLQTDDLLNDVGTMLIGKQAVDCGLIDEVGGISEAIKKLREL 238 >gi|330720768|gb|EGG98986.1| Periplasmic serine proteases (ClpP class) [gamma proteobacterium IMCC2047] Length = 113 Score = 62.3 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 8/111 (7%) Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 + + Q V+ ++ F+ V + R + G IWTG +A ++GLID +G Sbjct: 1 MKEADKEFWQGVLSVTHKQFIEQVKKGRGDRLTSNDKVFSGLIWTGEQALEIGLIDGLGS 60 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYW--FCDLKNLSISSLLEDTIPL 278 V + + I D++ + + F D ++ +S L + + Sbjct: 61 TGFVAREVIG------EENIVDFSLKRTPFEEFADRLGIAAASTLANKFGV 105 >gi|323187659|gb|EFZ72962.1| head-tail preconnector protein GP5 domain protein [Escherichia coli RN587/1] Length = 169 Score = 61.9 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 13/123 (10%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + ++ +++ D +++ + SPGG Sbjct: 42 NGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQVAG 101 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + Sbjct: 102 AFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYA 161 Query: 143 PFL 145 L Sbjct: 162 GHL 164 >gi|295091960|emb|CBK78067.1| Protease subunit of ATP-dependent Clp proteases [Clostridium cf. saccharolyticum K10] Length = 262 Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 68/224 (30%), Gaps = 37/224 (16%) Query: 35 SPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYA 82 + +++ G+IE + ++ ++ I DD +++ +++ GG Sbjct: 63 KNRIHLLSVIGEIEGHENLSSNTKTTKYEHILPKLAEIEDDDQVDGMLILINTVGGDVSC 122 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 G A+ I + + + ++ + IV T ++ + + Sbjct: 123 GLALAEMIASLSRPTVSLVIGDSHSIGVPLAVASDYSFIVPTGTMMIHPVRMTGMVIGAV 182 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 D + + S V+ A + + + Sbjct: 183 QTYDYFEMIQDRIL-----------SFVSEHARIAYDQLKGLML---------NTKMLTK 222 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 G + G EA K GLID VGG E L L + Sbjct: 223 DL-----GTVLVGEEAVKEGLIDEVGGIHEALTKLNELIEKKKK 261 >gi|164688506|ref|ZP_02212534.1| hypothetical protein CLOBAR_02151 [Clostridium bartlettii DSM 16795] gi|164602919|gb|EDQ96384.1| hypothetical protein CLOBAR_02151 [Clostridium bartlettii DSM 16795] Length = 321 Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 69/229 (30%), Gaps = 37/229 (16%) Query: 32 EDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGS 79 + + I I G+IE + +I + I D +++ L++ GG Sbjct: 116 TKDDKTIQCITIIGEIEGHFVGNPQKKATKYEHVIPMLYSIEEDPEIKGILIILNTVGGD 175 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 AG A+ I + + + + + + I + T +V I Sbjct: 176 VEAGLAMAELINSISKKVVTLVLGGSHSIGVPLATAGDYSFIAPSATMIVHPIRTNGLVI 235 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 V + + + + E+ R + Sbjct: 236 GVNETFEYFKKMQERINEFITRTSNISEEELT-------------------------RLM 270 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 LV G + G EA GLI+ VGG +E L L + + + Sbjct: 271 HAKDELVSDVGSVLIGKEAVDCGLINEVGGLKESLTKLKELIKEDNNNE 319 >gi|291087633|ref|ZP_06346979.2| translocation-enhancing protein TepA [Clostridium sp. M62/1] gi|291074513|gb|EFE11877.1| translocation-enhancing protein TepA [Clostridium sp. M62/1] Length = 264 Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 68/224 (30%), Gaps = 37/224 (16%) Query: 35 SPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYA 82 + +++ G+IE + ++ ++ I DD +++ +++ GG Sbjct: 65 KNRIHLLSVIGEIEGHENLSSNTKTTKYEHILPKLAEIEDDDQVDGMLILINTVGGDVSC 124 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 G A+ I + + + ++ + IV T ++ + + Sbjct: 125 GLALAEMIASLSRPTVSLVIGDSHSIGVPLAVASDYSFIVPTGTMMIHPVRMTGMVIGAV 184 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 D + + S V+ A + + + Sbjct: 185 QTYDYFEMIQDRIL-----------SFVSEHARIAYDQLKGLML---------NTKMLTK 224 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 G + G EA K GLID VGG E L L + Sbjct: 225 DL-----GTVLVGEEAVKEGLIDEVGGIHEALTKLNELIEKKKK 263 >gi|323454680|gb|EGB10550.1| hypothetical protein AURANDRAFT_3938 [Aureococcus anophagefferens] Length = 201 Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 83/199 (41%), Gaps = 11/199 (5%) Query: 49 DSQELIERIER--ISRDDSATALIVSLSSPGGSA----YAGEAIFRAIQKVKNRKPVITE 102 +E+ +++R A+++ + SPGG I R I +++ Sbjct: 4 GLREVRAQVDRVLAVVRPGDEAVVL-VESPGGEVSAVGAVAGQIRRQIARLRRATRATAC 62 Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK----SVKSS 158 V +AAS GY+ + ++ + AA +LVGS+GV+ P V+ ++ + + + + Sbjct: 63 VDAIAASGGYMAAVVAHEVRAAPFALVGSVGVVSYVPNVQRLCERSEIDVHARTGVLTAG 122 Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEA 218 K V P+ + ++ + + F + R D L+ G W GA A Sbjct: 123 SDKRTVDVVGVVTPEDERKAREELRLIHDVFKSHCVKYRPRLADDIDSLASGAAWLGAHA 182 Query: 219 KKVGLIDVVGGQEEVWQSL 237 +GL+D V ++ L Sbjct: 183 LSLGLVDAVDTSDDYLARL 201 >gi|304316850|ref|YP_003851995.1| peptidase S14 ClpP [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778352|gb|ADL68911.1| peptidase S14 ClpP [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 233 Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 62/198 (31%), Gaps = 25/198 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ I + L++ L++ GG AG AI I + I + Sbjct: 61 EHIIPQLVAIEENPQIKGLLILLNTVGGDVEAGLAIAEMISSLSKPTVSIVLGGGHSIGV 120 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +S + IV + T + I + V D + ++ Sbjct: 121 PLAVSSNYSFIVPSATMTIHPIRMTGLVIGVPQTFDYFNKMQDRIVEFVIR--------- 171 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 N + + + V G I G EA GLID VGG Sbjct: 172 NSRIKRDAFMNLMLKIGELANDV----------------GTILVGKEAVDYGLIDEVGGV 215 Query: 231 EEVWQSLYALGVDQSIRK 248 E L L ++ ++ Sbjct: 216 SEAINKLQQLIKEKENKR 233 >gi|153954066|ref|YP_001394831.1| protease [Clostridium kluyveri DSM 555] gi|146346947|gb|EDK33483.1| Predicted protease [Clostridium kluyveri DSM 555] Length = 229 Score = 61.6 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 70/224 (31%), Gaps = 37/224 (16%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73 S + D + + + I GQIE + +I + + D ++V L Sbjct: 24 FGMSSIADGNNKIQILPIIGQIEGHVTLPPETKATKYEHVIPNLILMENDPRVEGVLVVL 83 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 ++ GG AG AI I+ + + + + + I T +V I Sbjct: 84 NTVGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGVPLATASDYSFISPTATMIVHPIR 143 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + V + + ++ +++ +Q + D Sbjct: 144 MNGLIIGVPQTFQYFNKMQERINEFIVRTSRITREKLSDLMLQSDDLLNDM--------- 194 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 G I G +A + GLID VGG + + L Sbjct: 195 ----------------GTILIGKQAVEQGLIDKVGGISDAIKKL 222 >gi|299142750|ref|ZP_07035879.1| phage protein gp18 [Prevotella oris C735] gi|298575779|gb|EFI47656.1| phage protein gp18 [Prevotella oris C735] Length = 329 Score = 61.6 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 80/225 (35%), Gaps = 13/225 (5%) Query: 28 SSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSA 80 + +A + G + S++L + + + + ++SPGG A Sbjct: 91 FDDEQLPDNSIAYHRVFGTVMAESYWWFSSKQLEADLIAAEANPQISCHFLHINSPGGEA 150 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV--AAETSLVGSIGVLFQY 138 + + + ++ +KP++T +M SAGY I C N I + + Y Sbjct: 151 WYLDRLSETLR--NCQKPILTFYEQMCCSAGYYIGCHGNRIYALTENDYVGCIGTMCSFY 208 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + F +++ ++ + + +Q++++ F+ V R Sbjct: 209 DFEDYFAKLGIKKVEAKATNSDLKNKTFDDLRHGNDEAFVQNILNPLNAQFLAEVRGQRK 268 Query: 199 IPYD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 + + + + G + +A ++GL D + +G Sbjct: 269 LLAELPEDAPVLRGETFYTPQAVEIGLTDGSRTMAQAVAEAMTMG 313 >gi|237738215|ref|ZP_04568696.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium mortiferum ATCC 9817] gi|229420095|gb|EEO35142.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium mortiferum ATCC 9817] Length = 361 Score = 61.6 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 83/253 (32%), Gaps = 47/253 (18%) Query: 30 HVEDNSPHVARIAIRGQI-------EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +++ S V I + G I + ++++ + L + ++SPGG + Sbjct: 10 EIKNISDDVGEIRVYGDICKWAWEEYGETSSVTFSKQLANLKNVKKLELKINSPGGDVFE 69 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 A++ I++ K V + MAASA +++ A+N + + L Sbjct: 70 AVAMYHEIKRFAQGKEVTAYIDGMAASAATILTLAANKTIMGKGCYFMIHNPLMY----- 124 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 N + + + ++ + + L E + D Sbjct: 125 ------------------------MGYANVEEMNEAIEHLNKTKDNLLDLYEEKCKLSRD 160 Query: 203 KTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQ----------SLYALGVDQSIRKIKD 251 + D W T EA + G ID + + L L + + ++ I Sbjct: 161 EIAEKMDKTTWYTAEEALQAGFIDEIANYDSSISNLNISNVFTPELKNLAIPEKLKDILQ 220 Query: 252 WNPPKNYWFCDLK 264 N + DLK Sbjct: 221 ENKEEKMTLQDLK 233 >gi|260910201|ref|ZP_05916878.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260635705|gb|EEX53718.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 330 Score = 61.6 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 13/230 (5%) Query: 30 HVEDNSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYA 82 + E +A + G + S++L+ + + T + ++SPGG A+ Sbjct: 93 NEEIPENSIAYHRVWGTVMSDAYWFFSSKQLVADLMAAEANPQITCHFLHVNSPGGDAWF 152 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA-AETSLVGSIGVLFQYPYV 141 + + ++ KP+IT + SAGY I+C N + A VG IG + + Sbjct: 153 LDRLDETLRA--CTKPIITLYEHLCCSAGYYIACHGNRVYALTANDYVGCIGTMCSFYDF 210 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA-VQMMQDVVDSSYHWFVRLVSESRNIP 200 +P+ +KLG+ + K+ + F ++ Q + D ++ F+ V R+ Sbjct: 211 QPYFEKLGIKLIEAKADKSDLKNKTFDDLRQGKPEQYVDDFLNPLNEQFLACVRSMRSGL 270 Query: 201 YD--KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + + G + AEA GL D E +G + + + Sbjct: 271 AELGDDAPVLRGETYLTAEAVTTGLCDGTRTFAEAVAEAVVMGAEYTEAE 320 >gi|37626097|gb|AAQ96473.1| putative protease [Vibrio phage VP16T] Length = 395 Score = 61.2 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 51/181 (28%), Gaps = 10/181 (5%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 ++ I DDS + + SPGG A + I+ K AA Sbjct: 83 DVFAAINAAESDDSVKNIEYYIDSPGGEAEGAIKLGDMIRGTKKPSTAFVSTASSAAYLA 142 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 + + + + P ++D P E Sbjct: 143 ASQADKIVATSRVSRAGNIGAVLSMRRPSQSSYIDVTST---------DAPNKRPDPETE 193 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQ 230 + + +D ++ F + V++ R G A K+G+ID + Sbjct: 194 EGRRVIREQALDPLHNMFAQAVADGRGTTLADVNQNFGRGGSLFAETALKMGMIDEILTA 253 Query: 231 E 231 E Sbjct: 254 E 254 >gi|301300713|ref|ZP_07206898.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851651|gb|EFK79350.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus salivarius ACS-116-V-Col5a] Length = 234 Score = 61.2 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 70/213 (32%), Gaps = 37/213 (17%) Query: 32 EDNSPHVARIAIRGQIEDSQELIERIERI-SRDD-----SATALIVSLSSPGGSAYAGEA 85 ++ I+I G+I + E I +DD + + ++SPGGS + G A Sbjct: 2 SKTQDNIGEISIYGEIVSEKWFDEEISATSFKDDLDDLGDVKTINLHINSPGGSVFEGIA 61 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I ++ K + V +AAS +I+ + + I E S++ L Sbjct: 62 IHNMLKMHKAKIN--VYVDGLAASIASVIAMSGDTIFMPENSMLMIHNPWTVAMGNSKEL 119 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K + + +K L + I + + Sbjct: 120 RKQADDLDRIAQMSVKTY----------------------------LSKSNGKIDEETLV 151 Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSL 237 L D W + EA GL D V + SL Sbjct: 152 KLLDEETWLSAQEAVDYGLADEVLESNKAVASL 184 >gi|126352250|tpe|CAJ29275.1| TPA: exfoliative toxin [Staphylococcus intermedius] Length = 120 Score = 61.2 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 63/120 (52%) Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 + +AAS GY IS ++ I A SL GSIGV+ + LD LG+ ++KS K Sbjct: 1 MENLAASGGYYISAPADKIYAGPQSLTGSIGVISESKDYSELLDNLGIKTNTIKSGAHKD 60 Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVG 222 S ++ + +++Q + S+ FV +V E R + K L+DGRI++ +AK G Sbjct: 61 ILSSSRKMTDEEREILQSINKDSFDQFVNVVKEGRQMSESKVRELADGRIYSAQQAKSNG 120 >gi|323705387|ref|ZP_08116962.1| peptidase S14 ClpP [Thermoanaerobacterium xylanolyticum LX-11] gi|323535289|gb|EGB25065.1| peptidase S14 ClpP [Thermoanaerobacterium xylanolyticum LX-11] Length = 232 Score = 61.2 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 62/197 (31%), Gaps = 25/197 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ I + L++ L++ GG AG AI I + I + Sbjct: 61 EHIIPQLVAIEENPQIKGLLILLNTVGGDVEAGLAIAEMISSLSKPTVSIVLGGGHSIGV 120 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +S + IV + T + I + V D + ++ Sbjct: 121 PLAVSSNYSFIVPSATMTIHPIRMTGLVIGVPQTFDYFNKMQDRIVEFVIR--------- 171 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 N + + + V G I G EA GLID VGG Sbjct: 172 NSRIKRDAFMNLMLKIGELANDV----------------GTILVGKEAVDYGLIDEVGGV 215 Query: 231 EEVWQSLYALGVDQSIR 247 E + L L ++ R Sbjct: 216 SEAIEKLQQLIKEKENR 232 >gi|261856483|ref|YP_003263766.1| peptidase S49 domain protein [Halothiobacillus neapolitanus c2] gi|261836952|gb|ACX96719.1| Peptidase S49 domain protein [Halothiobacillus neapolitanus c2] Length = 347 Score = 60.8 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 47/216 (21%), Positives = 90/216 (41%), Gaps = 12/216 (5%) Query: 37 HVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + G + S +E+ + ++V L S GG A + Sbjct: 93 RTFVLRFSGDLRASQVGALREEVSSILSVAR--PETDEVLVCLESGGGLVTAYGLAAAQL 150 Query: 91 QKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +++ + V ++AAS GY+++ ++ IVAA ++VGSIGV+ Q P + L Sbjct: 151 ARLRAAGLHLTVAVDKVAASGGYMMAAVAHRIVAAPFAIVGSIGVVAQIPNIHRLLKNHD 210 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 V I+ + + K + E P+ + Q ++ ++ F + E R P ++ Sbjct: 211 VDIELLTAGQYKRTLTLLGENTPEGREKFQSQLNETHELFKSFLLEYR--PSLDLSKVAT 268 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQS-LYALGVDQ 244 G W G +A +GL+D + +E + V + Sbjct: 269 GEYWFGTQAMTLGLVDELTTSDEWIERQFAERAVIE 304 >gi|169334787|ref|ZP_02861980.1| hypothetical protein ANASTE_01193 [Anaerofustis stercorihominis DSM 17244] gi|169257525|gb|EDS71491.1| hypothetical protein ANASTE_01193 [Anaerofustis stercorihominis DSM 17244] Length = 272 Score = 60.8 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 68/229 (29%), Gaps = 34/229 (14%) Query: 29 SHVEDNSPHVARI-AIRGQIEDS--------QELIERIERISRDDSATALIVSLSSPGGS 79 ++ I I G IE + +I I + D +++ L++ GG Sbjct: 39 DGYNSGIQTISIIGEIEGHIEAGSPKKSTKYEHIIPMIIDVEEKDEIKGVLLILNTMGGD 98 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 AG AI I + + S + V+ S + + +P Sbjct: 99 VEAGLAISELISGMSKPCVTLVLGGSH--------SIGVPLAVSGSYSFIVPTATMMIHP 150 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 L + + E + ++ ++ ++ + Sbjct: 151 IRTTGLVIGVLQSFLYFQKMQERITEFVVEHSNVDKELFNKIMLNTDELVNDM------- 203 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 G + G +A ++GLID VG + L+ L + K Sbjct: 204 ----------GSVLVGEQAVEIGLIDAVGSLSDARNKLFELIREYEHEK 242 >gi|219854679|ref|YP_002471801.1| hypothetical protein CKR_1336 [Clostridium kluyveri NBRC 12016] gi|219568403|dbj|BAH06387.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 241 Score = 60.8 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 70/224 (31%), Gaps = 37/224 (16%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73 S + D + + + I GQIE + +I + + D ++V L Sbjct: 36 FGMSSIADGNNKIQILPIIGQIEGHVTLPPETKATKYEHVIPNLILMENDPRVEGVLVVL 95 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 ++ GG AG AI I+ + + + + + I T +V I Sbjct: 96 NTVGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGVPLATASDYSFISPTATMIVHPIR 155 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + V + + ++ +++ +Q + D Sbjct: 156 MNGLIIGVPQTFQYFNKMQERINEFIVRTSRITREKLSDLMLQSDDLLNDM--------- 206 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 G I G +A + GLID VGG + + L Sbjct: 207 ----------------GTILIGKQAVEQGLIDKVGGISDAIKKL 234 >gi|167748876|ref|ZP_02421003.1| hypothetical protein ANACAC_03650 [Anaerostipes caccae DSM 14662] gi|317470284|ref|ZP_07929678.1| Clp protease [Anaerostipes sp. 3_2_56FAA] gi|167651846|gb|EDR95975.1| hypothetical protein ANACAC_03650 [Anaerostipes caccae DSM 14662] gi|316902257|gb|EFV24177.1| Clp protease [Anaerostipes sp. 3_2_56FAA] Length = 239 Score = 60.8 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 61/190 (32%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I + + D +++ L++ GG G A+ I + T + S Sbjct: 68 EHMIPALAKAEYSDDIKGILILLNTVGGDVECGLALAEMIASLSKP----TVTLVLGGSH 123 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + A + + +V S ++ + S +++ Sbjct: 124 SIGVPLAVSSDYSF---IVKSATMMIHPVRSSGTFIGVLQSYRNI--------------- 165 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 K + + V E ++ G + G +A ++GLI+ +GG Sbjct: 166 -EKIQDRITRFISDHSDIAEDKVEELMLHIGEQVKD--AGTVLEGEQAVELGLINEIGGM 222 Query: 231 EEVWQSLYAL 240 E + L L Sbjct: 223 SEAFAKLKEL 232 >gi|302382492|ref|YP_003818315.1| peptidase S49 [Brevundimonas subvibrioides ATCC 15264] gi|302193120|gb|ADL00692.1| peptidase S49 [Brevundimonas subvibrioides ATCC 15264] Length = 520 Score = 60.4 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 75/204 (36%), Gaps = 15/204 (7%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGS-----AYAGEAIFRAIQKVKNRKPVITEV 103 L+ + D + + L +PGG + + A + I Sbjct: 125 GYDTLLIAMREAMADARVRGIFLRLDTPGGVVGGGLPALAQFMREA--RESAGGKPIWVY 182 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS--SPMK 161 +MA SAGY I+ ++ I+A VGSIG + + L++ GV+I S++ +K Sbjct: 183 ADMACSAGYWIAAQADRILAPSVGYVGSIGAVMVHEDWSGALEQDGVAITSIEFPDGGVK 242 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-NIPYDKT-----LVLSDGRIWTG 215 E + + ++ +Q ++ F+ V+ R + + Sbjct: 243 TEGAWWKALSEGGRTALQSDINQVGEMFLADVAAGRPGLDREAMLAMRADAFMAEHTDPA 302 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYA 239 +GL D + +E + +L Sbjct: 303 RSGVTLGLADEIATEEAAFAALVD 326 >gi|150016096|ref|YP_001308350.1| peptidase S14, ClpP [Clostridium beijerinckii NCIMB 8052] gi|149902561|gb|ABR33394.1| peptidase S14, ClpP [Clostridium beijerinckii NCIMB 8052] Length = 235 Score = 60.4 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 72/224 (32%), Gaps = 37/224 (16%) Query: 29 SHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSP 76 + + + + ++I GQIE + +I ++ I ++D A L++ L++ Sbjct: 34 TTLATPNKRIQVLSIIGQIEGHSVLPPQTKATKYEHIIPQLIDIEQNDDAKGLLIVLNTV 93 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GG AG AI I+ + I + S + I + T +V + + Sbjct: 94 GGDVEAGLAISEMIRSMSKPTVSIVIGGGHSIGVPLATSADFSFITPSATMIVHPVRMNG 153 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 V + + + ++ + + V Sbjct: 154 FVIGVSQTFEYFKKMQERINEFIVR---------TSNIKPDTLERFMLQTDDLLNDV--- 201 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 G + G +A GLID VGG +E L L Sbjct: 202 -------------GTMLIGKQAVDCGLIDQVGGIQEALSKLNEL 232 >gi|330946658|gb|EGH47631.1| putative inner membrane peptidase [Pseudomonas syringae pv. pisi str. 1704B] Length = 165 Score = 60.4 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 63/170 (37%), Gaps = 7/170 (4%) Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 N I++A +++GSIGV+ Q P V L K + + + + K + F E K + Sbjct: 3 NKIISAPFAILGSIGVVAQLPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKF 62 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 Q +D ++ F V+ R P ++ G +W G A L+D + +E Sbjct: 63 QQDLDITHDLFKNFVASYR--PQLSIDEVATGEVWLGMAAVDKLLVDELKTSDEYLAERA 120 Query: 239 ALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 + + + + + +S + + Q W Sbjct: 121 KDADVFHLHYV-----QRKSLQERMGMAAATSADQLVTKWWGRLTQQRFW 165 >gi|154484793|ref|ZP_02027241.1| hypothetical protein EUBVEN_02511 [Eubacterium ventriosum ATCC 27560] gi|149734641|gb|EDM50558.1| hypothetical protein EUBVEN_02511 [Eubacterium ventriosum ATCC 27560] Length = 217 Score = 60.4 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 75/233 (32%), Gaps = 43/233 (18%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 +N ++ ++I G+IE + ++ + +I D L++ L++ G Sbjct: 13 DHNNNHKNIFLLSIIGEIEGHENVASGTKATKYEHILPMLAKIEDDQDIDGLLIILNTVG 72 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G G AI I + KP ++ V + S G ++ +++ T + V Sbjct: 73 GDVECGLAIAEMIASL--SKPTVSLVLGGSHSIGVPLAVSADYSFIVPTGTMVIHPVRMN 130 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + + + E+R Sbjct: 131 GM--------------------------FIGVPQTYEYFKKIQERINDFVINHCHIRENR 164 Query: 198 NIPYDKTLVLSD---GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 + G I G + K G+ID +GG ++ + LY + +S + Sbjct: 165 FSELMNETEILTKDVGSILVGKQTVKEGIIDEIGGLKDAMKKLYEMVDRESNK 217 >gi|167469874|ref|ZP_02334578.1| signal peptide peptidase SppA, 67K type [Yersinia pestis FV-1] Length = 235 Score = 60.4 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 70/200 (35%), Gaps = 28/200 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--------- 51 + F + I ++ L ++ +YF + S + + + G I D Sbjct: 19 LNFTRELILNLFLALLILIGVGIYFQFQSKPVEPVKGALLVNLSGVIVDQPAINNKLRQW 78 Query: 52 ------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQK 92 +++E I DD+ L++SLS G+ + + I +A+++ Sbjct: 79 GRELLGASSNRLQENSLFDIVETIRLAKDDDNINGLVLSLSDLTGADQSSLQYIGKALRE 138 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 ++ I V + Y ++ +N I + V G Y K L+ L V+ Sbjct: 139 FRDTGKKIYAVGDSYNQTQYYLASFANKIYLSPQGAVDLHGFASNNLYYKSLLENLKVTT 198 Query: 153 KSVKSSPMKAEPSPFSEVNP 172 + K+ P + Sbjct: 199 NIFRVGTYKSAVEPMIRNDM 218 >gi|145516697|ref|XP_001444237.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124411648|emb|CAK76840.1| unnamed protein product [Paramecium tetraurelia] Length = 241 Score = 60.4 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 95/224 (42%), Gaps = 11/224 (4%) Query: 35 SPHVARIAIRGQIE-DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 P + + I I+ +S +L+E E + AL V ++S GG GE + + I+ Sbjct: 7 KPTIPILRINSGIDHNSAKLVE--ESLKPLTRMKALAVVVNSTGGLLVQGELMKKKIELF 64 Query: 94 --KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 ++ P+ T + A SAGY + N I E S+VGSIGVL+ + KLG Sbjct: 65 AKTHKIPLYTFAEDSALSAGYYLLSIGNKIFVDEASMVGSIGVLYLNLSIDKLTRKLGFE 124 Query: 152 IKSVKSSPMKAEPS--PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR----NIPYDKTL 205 + S+ E + + +++D F + R D Sbjct: 125 PRKFSSNKKLFLNITGLNDERDEEMEGIVKDQFGIMRQQFFDHCDKYRPQLQKQDADVKD 184 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 ++ + I+TG EA K GL D +G EEV L+ + I +I Sbjct: 185 LIYNANIFTGIEAVKYGLADEIGNFEEVLNRLHPDCQLRDITRI 228 >gi|37626162|gb|AAQ96537.1| putative protease [Vibrio phage VP16C] Length = 395 Score = 60.4 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 61/210 (29%), Gaps = 25/210 (11%) Query: 38 VARIAIRGQIEDSQELI---------------ERIERISRDDSATALIVSLSSPGGSAYA 82 ARI ++G + + + E I+ DDS + ++ SPGG A Sbjct: 53 TARINMQGVMTSTPDFFAMLFGGGNCLYCDLFEAIDAAENDDSIKRIEYAIDSPGGEAEG 112 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + I+ K + AA + + + P Sbjct: 113 AIKLGDKIRNAKKPSTALVSTASSAAYLAASQADEIVAASRVSRVGNIGAVLSMRRPSTS 172 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 ++D P E + + +D ++ F + V++ R Sbjct: 173 VYVDVTST---------DAPNKRPDPESEEGRRVIREQSLDPLHNMFAQAVADGRGTTLS 223 Query: 203 KTLV-LSDGRIWTGAEAKKVGLIDVVGGQE 231 G A K+G+ID + E Sbjct: 224 DVNQNFGRGGSLFAETALKMGMIDKILTAE 253 >gi|18310659|ref|NP_562593.1| Clp protease [Clostridium perfringens str. 13] gi|18145340|dbj|BAB81383.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 247 Score = 60.4 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 80/232 (34%), Gaps = 37/232 (15%) Query: 29 SHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSP 76 + ++ + I GQIE + +I ++ I ++D ++ L++ Sbjct: 41 PEHKKEDSNIQVLTIIGQIEGHSVQPPQTKTTKYEHMIPQLIDIEQNDRIKGILFVLNTV 100 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GG AG AI I+ + +KP ++ V S G ++ AS + ++ + + Sbjct: 101 GGDVEAGLAIAEMIRSL--KKPTVSLVIGGGHSIGVPLATASQYSFISPSATMIIHPIRM 158 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 P + +Q + V + Sbjct: 159 NGLV----------------------IGVPQTFNYFNKMQERINDFIIRTSEIKLDVLKK 196 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + D+ L G I G EA K GLI+ VGG +E L +L ++ Sbjct: 197 MMMQTDELLN-DMGTILVGEEAVKCGLINEVGGVKEALDKLNSLIEAYNVEP 247 >gi|110799331|ref|YP_696364.1| Clp protease [Clostridium perfringens ATCC 13124] gi|168211435|ref|ZP_02637060.1| clp protease [Clostridium perfringens B str. ATCC 3626] gi|168214490|ref|ZP_02640115.1| clp protease [Clostridium perfringens CPE str. F4969] gi|168216964|ref|ZP_02642589.1| clp protease [Clostridium perfringens NCTC 8239] gi|182626367|ref|ZP_02954121.1| clp protease [Clostridium perfringens D str. JGS1721] gi|110673978|gb|ABG82965.1| clp protease [Clostridium perfringens ATCC 13124] gi|170710555|gb|EDT22737.1| clp protease [Clostridium perfringens B str. ATCC 3626] gi|170714034|gb|EDT26216.1| clp protease [Clostridium perfringens CPE str. F4969] gi|177908318|gb|EDT70866.1| clp protease [Clostridium perfringens D str. JGS1721] gi|182380948|gb|EDT78427.1| clp protease [Clostridium perfringens NCTC 8239] Length = 229 Score = 60.0 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 80/232 (34%), Gaps = 37/232 (15%) Query: 29 SHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSP 76 + ++ + I GQIE + +I ++ I ++D ++ L++ Sbjct: 23 PEHKKEDSNIQVLTIIGQIEGHSVQPPQTKTTKYEHMIPQLIDIEQNDRIKGILFVLNTV 82 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GG AG AI I+ + +KP ++ V S G ++ AS + ++ + + Sbjct: 83 GGDVEAGLAIAEMIRSL--KKPTVSLVIGGGHSIGVPLATASQYSFISPSATMIIHPIRM 140 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 P + +Q + V + Sbjct: 141 NGLV----------------------IGVPQTFNYFNKMQERINDFIIRTSEIKLDVLKK 178 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + D+ L G I G EA K GLI+ VGG +E L +L ++ Sbjct: 179 MMMQTDELLN-DMGTILVGEEAVKCGLINEVGGVKEALDKLNSLIEAYNVEP 229 >gi|218528332|ref|YP_002419148.1| peptidase S49 [Methylobacterium chloromethanicum CM4] gi|218520635|gb|ACK81220.1| peptidase S49 [Methylobacterium chloromethanicum CM4] Length = 299 Score = 60.0 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 84/223 (37%), Gaps = 17/223 (7%) Query: 33 DNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGS 79 + VA + I G I + + + + A+++ + SPGGS Sbjct: 69 TTADGVAIVPITGPIFPRANLMTEMSGSVSATMVANDLRLAQANPDVGAIMLLVDSPGGS 128 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A+ I ++ RK V+ V AASA Y ++ A++ +V +T +VGSIGV+ Sbjct: 129 PTGMNALADQIYAMRGRKRVLAHVSGAAASAAYWLATAASELVVEKTGMVGSIGVVAAIS 188 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 +SI+ V SS P P ++ ++D F+ V+ R Sbjct: 189 KQVEPDASGSLSIEIVSSSAPNKRPDPQ---TDDGAAEIRAILDGIEAQFIADVARGRGT 245 Query: 200 PYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 K G + GA A G+ D V E L Sbjct: 246 TVAKVKSDFGAGGMKIGAAAVAAGMADRVQTYERSLSELARTA 288 >gi|303239203|ref|ZP_07325732.1| peptidase S49 [Acetivibrio cellulolyticus CD2] gi|302593248|gb|EFL62967.1| peptidase S49 [Acetivibrio cellulolyticus CD2] Length = 269 Score = 60.0 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 66/226 (29%), Gaps = 33/226 (14%) Query: 43 IRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I G I + +I ++ I L++ L++ GG AG AI I Sbjct: 69 IEGHIVLPPQNKTTKYEHVIPQLVAIEESKEIDGLLLILNTVGGDVEAGLAIAEMIAS-- 126 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + + + ++ + + +L + Sbjct: 127 ------------MSKPTVSLVLGGGHSIGVPMAVSTKYSFIAPSATMTIHPIRLNGMVIG 174 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 V F ++ + VQ + + S F L+ + + G I Sbjct: 175 VP-----QTFEYFDKMQERVVQFVAKNSNISKETFRSLMLK-TGELANDV-----GTILF 223 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 G EA GLID GG E + LY L + + K Sbjct: 224 GEEAVTQGLIDGTGGLYEALKKLYELIELKKKENPNSYIDSKEGLQ 269 >gi|291542999|emb|CBL16109.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ruminococcus bromii L2-63] Length = 269 Score = 60.0 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 25/207 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I + + D+ L+V +++ GG AG AI I +KP ++ V S Sbjct: 84 EHVIPLLVSVEEDERIDGLLVLINTVGGDVEAGLAIAEVIS--GMKKPTVSIVLGGGHSI 141 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G ++ A+ A+++ + V + F + Sbjct: 142 GIPLAVAAKKSFIAKSASMTVHPVRTTGLTLGVP-----------------QTFEYFQRM 184 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + + + + + +LV + G I G EA + GLID VG Sbjct: 185 QDRITTFVAENSNITKDRYNQLV-LNTGELVMDI-----GTILEGEEAVEEGLIDEVGTV 238 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKN 257 + +LY L + K K Sbjct: 239 SDAIDALYDLIKESKESKPKSAKSRSK 265 >gi|110803390|ref|YP_698964.1| Clp protease [Clostridium perfringens SM101] gi|168207521|ref|ZP_02633526.1| clp protease [Clostridium perfringens E str. JGS1987] gi|169342742|ref|ZP_02863782.1| clp protease [Clostridium perfringens C str. JGS1495] gi|110683891|gb|ABG87261.1| putative endopeptidase [Clostridium perfringens SM101] gi|169299248|gb|EDS81318.1| clp protease [Clostridium perfringens C str. JGS1495] gi|170661146|gb|EDT13829.1| clp protease [Clostridium perfringens E str. JGS1987] Length = 229 Score = 60.0 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 80/232 (34%), Gaps = 37/232 (15%) Query: 29 SHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSP 76 + ++ + I GQIE + +I ++ I ++D ++ L++ Sbjct: 23 PEHKKEDSNIQVLTIIGQIEGHSVQPPQTKTTKYEHMIPQLIDIEQNDRIKGILFVLNTV 82 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GG AG AI I+ + +KP ++ V S G ++ AS + ++ + + Sbjct: 83 GGDVEAGLAIAEMIRSL--KKPTVSLVIGGGHSIGVPLATASKYSFISPSATMIIHPIRM 140 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 P + +Q + V + Sbjct: 141 NGLV----------------------IGVPQTFNYFNKMQERINDFIIRTSEIKLDVLKK 178 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + D+ L G I G EA K GLI+ VGG +E L +L ++ Sbjct: 179 MMMQTDELLN-DMGTILVGEEAVKCGLINEVGGVKEALDKLNSLIEAYNVEP 229 >gi|28210969|ref|NP_781913.1| ATP-dependent Clp protease proteolytic subunit [Clostridium tetani E88] gi|28203408|gb|AAO35850.1| ATP-dependent clp protease proteolytic subunit [Clostridium tetani E88] Length = 255 Score = 59.6 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 68/227 (29%), Gaps = 37/227 (16%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 + + + I GQ+E + +I ++ I DD+ ++V L++ G Sbjct: 52 ETPKPNDRIYILPIIGQVEGHAAVPPQNKSTKYEHVIPQLVNIQMDDNIEGVLVILNTVG 111 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G AG AI I + + + + + I T ++ I + Sbjct: 112 GDVEAGLAIAEMIGSLGKPTVSLVIGGGHSIGVPLATASNYSFISPTATMIIHPIRMNGL 171 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 V + + ++ + ++ + D Sbjct: 172 ILGVPQTFEYFDKMQDRIIEFIVRTSKMDKETIKDMMIKTDNLLNDM------------- 218 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 G I G EA GLID VGG +E L L + Sbjct: 219 ------------GTILIGKEAVDCGLIDEVGGIKEALNKLEELIKKE 253 >gi|300214522|gb|ADJ78938.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus salivarius CECT 5713] Length = 234 Score = 59.6 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 72/213 (33%), Gaps = 37/213 (17%) Query: 32 EDNSPHVARIAIRGQIEDSQELIERIERI-SRDD-----SATALIVSLSSPGGSAYAGEA 85 ++ I+I G+I + E I +DD + + ++SPGGS + G A Sbjct: 2 SKTQDNIGEISIYGEIVSEKWFDEEISATSFKDDLDDLGDVKTINLHINSPGGSVFEGIA 61 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I ++ N+ + V +AAS +I+ + + I E S++ L Sbjct: 62 IHNMLK--MNKAKINVYVDGLAASIASVIAMSGDTIFMPENSMLMIHNPWTVAMGNSKEL 119 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 K + + + +K L + I + + Sbjct: 120 RKQADDLDRIAQASVKTY----------------------------LSKSNGKIDEETLV 151 Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSL 237 L D W + EA GL D V + SL Sbjct: 152 KLLDEETWLSAQEAVDYGLADEVLESNKAVASL 184 >gi|197303368|ref|ZP_03168407.1| hypothetical protein RUMLAC_02090 [Ruminococcus lactaris ATCC 29176] gi|197297366|gb|EDY31927.1| hypothetical protein RUMLAC_02090 [Ruminococcus lactaris ATCC 29176] Length = 259 Score = 59.6 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 77/240 (32%), Gaps = 39/240 (16%) Query: 38 VARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + + I G+IE + L+ R+ +D +++ L++ GG AG Sbjct: 47 IQLLTIIGEIEGHENVSGNTKATKYEHLLPRLAEAEENDEIEGVLILLNTMGGDVEAGLG 106 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I I + + + +S + IV + T ++ + + V Sbjct: 107 IAEMIASLGKPTVSLVLGGSHSIGGPLAVSADYSFIVPSGTMIIHPVRSSGMFIGVIQSY 166 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 + + + + + Q V D Sbjct: 167 RNMERTQDRITRFIASHSHISQERIVELMLDSTQLVKDV--------------------- 205 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 G + G EA + G+ID VGG E +Q L+ L R+ K P +++ KN Sbjct: 206 ----GTMLEGEEAVREGMIDEVGGIHEAFQKLHEL--IDEERRKKKQEKPDHFFDDTKKN 259 >gi|125973612|ref|YP_001037522.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium thermocellum ATCC 27405] gi|256003432|ref|ZP_05428423.1| peptidase S14 ClpP [Clostridium thermocellum DSM 2360] gi|281417817|ref|ZP_06248837.1| peptidase S14 ClpP [Clostridium thermocellum JW20] gi|125713837|gb|ABN52329.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium thermocellum ATCC 27405] gi|255992722|gb|EEU02813.1| peptidase S14 ClpP [Clostridium thermocellum DSM 2360] gi|281409219|gb|EFB39477.1| peptidase S14 ClpP [Clostridium thermocellum JW20] gi|316940146|gb|ADU74180.1| peptidase S14 ClpP [Clostridium thermocellum DSM 1313] Length = 257 Score = 59.6 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 84/234 (35%), Gaps = 37/234 (15%) Query: 27 WSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLS 74 + + + ++ + + GQIE + +I ++ I + L++ L+ Sbjct: 34 GKTSISSSKGNIHCLTVIGQIEGHMVLPPQNKTTKYEHVIPQLVAIEESEEIDGLLLILN 93 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 + GG AG AI I + KP ++ V S G ++ A+N A ++ + + Sbjct: 94 TVGGDVEAGLAIAEMIASM--SKPTVSLVLGGGHSIGVPMAVATNYSFIAPSATMTIHPI 151 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + F + + VQ + + S F L+ Sbjct: 152 RLNGMVIGVP-----------------QTYEYFDRMQDRVVQFVTKNSNISKERFRELML 194 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + + G I G EA K GLID +GG +E + LY L + K Sbjct: 195 K-TGELANDV-----GTILFGEEAVKYGLIDEMGGLKEALKKLYELIAKRKKNK 242 >gi|326202158|ref|ZP_08192028.1| peptidase S49 [Clostridium papyrosolvens DSM 2782] gi|325987953|gb|EGD48779.1| peptidase S49 [Clostridium papyrosolvens DSM 2782] Length = 251 Score = 59.6 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 70/213 (32%), Gaps = 33/213 (15%) Query: 43 IRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I G I + +I ++ I L++ L++ GG AG AI + + Sbjct: 53 IEGHILLPPHNKTTKYEHIIPQLVAIEESKQIEGLLLVLNTVGGDVEAGLAISEMVSSL- 111 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 KP ++ V S G ++ ++N A ++ + + + Sbjct: 112 -SKPTVSLVLGGGHSIGVPMAVSANHSFIASSATMTIHPIRMNGLVIGVP---------- 160 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 F ++ + V + F L+ + + G + Sbjct: 161 -------QTYEYFDKMQERVVNFVCSHSGIKREKFRELMLK-TGELANDV-----GTVLF 207 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 G EA + GLID VGG + + L L + Sbjct: 208 GEEATQSGLIDQVGGLSDAIKKLNELIEIRRKE 240 >gi|302386512|ref|YP_003822334.1| peptidase S14 ClpP [Clostridium saccharolyticum WM1] gi|302197140|gb|ADL04711.1| peptidase S14 ClpP [Clostridium saccharolyticum WM1] Length = 260 Score = 59.2 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 70/223 (31%), Gaps = 37/223 (16%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 N + I I G++E ++ ++ I DDS L+V L++ G Sbjct: 57 DDNANKRKIHLITIIGEVEGHENLSGNSKATKYDHILPKLAEIEDDDSVEGLLVLLNTSG 116 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G AG AI I + + + + + IV T ++ + + Sbjct: 117 GDVDAGLAIAEMIASLSIPTVSLVLGGSHSIGVPLAVCTDYSFIVPTGTMMIHPVRMTGM 176 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + + + S + ++ R Sbjct: 177 VIGASQTYEYFEMIQDRILSFVSNHAKIAYDQL-------------------------KR 211 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 + + L G + G E K GLI+ VGG ++ + LY L Sbjct: 212 LMLNTEMLTRDLGTVLVGEETVKEGLINEVGGIKDALKKLYEL 254 >gi|15895087|ref|NP_348436.1| periplasmic serine protease [Clostridium acetobutylicum ATCC 824] gi|15024785|gb|AAK79776.1|AE007690_3 Periplasmic serine protease, YMFB B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] gi|325509225|gb|ADZ20861.1| Periplasmic serine protease [Clostridium acetobutylicum EA 2018] Length = 226 Score = 59.2 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 25/193 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 +E+I R+ + + +++ L++ GG AG AI I+ + + + Sbjct: 56 EEIIPRLMNVEYNPEIKGVLIILNTIGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGV 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 S + I T ++ I + V + + ++ + Sbjct: 116 PLATSSNYSFISPTATMIIHPIRMNGLIIGVPQTFQYFNKMQERISEFIVRTSKIKKETL 175 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 ++ + + D G I G +A K GLID VGG Sbjct: 176 TELMLKTDELLNDM-------------------------GTILIGKQAVKYGLIDSVGGI 210 Query: 231 EEVWQSLYALGVD 243 +E L L D Sbjct: 211 KEALSKLKELIED 223 >gi|325263865|ref|ZP_08130598.1| Clp protease [Clostridium sp. D5] gi|324030903|gb|EGB92185.1| Clp protease [Clostridium sp. D5] Length = 242 Score = 59.2 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 73/230 (31%), Gaps = 37/230 (16%) Query: 31 VEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGG 78 E ++ + I G+IE + LI R+ +D +++ L++ GG Sbjct: 30 KESGRHNIQLMTIIGEIEGHEAVSGNTKATKYEHLIPRLAEAEDNDDIEGILILLNTLGG 89 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 AG AI I + + + +S + IV + T +V + + Sbjct: 90 DVEAGLAIAEMIASLSKPTVSLVLGGSHSIGGPLAVSADYSFIVPSGTMIVHPVRSTGMF 149 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V + + + + + Q V D Sbjct: 150 IGVIQSYRNMEKTQDRITRFIASHSNITQERLEKLMLDSSQLVKDV-------------- 195 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 G + G EA K GLID VGG + L+++ D+ + Sbjct: 196 -----------GTLLEGEEAVKEGLIDEVGGISQALSKLHSMIEDRKKEE 234 >gi|90961762|ref|YP_535678.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus phage Sal1] gi|90820956|gb|ABD99595.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus phage Sal1] Length = 249 Score = 58.9 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 73/215 (33%), Gaps = 37/215 (17%) Query: 30 HVEDNSPHVARIAIRGQIEDSQELIERIERI-SRDD-----SATALIVSLSSPGGSAYAG 83 + ++ I+I G+I + E I +DD + + ++SPGGS + G Sbjct: 15 KMSKTQDNIGEISIYGEIVSEKWFDEEISATSFKDDLDDLGDVKTINLHINSPGGSVFEG 74 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 AI ++ N+ + V +AAS +I+ + + I E S++ Sbjct: 75 IAIHNMLK--MNKAKINVYVDGLAASIASVIAMSGDTIFMPENSMLMIHNPWTVAMGNSK 132 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K + + + +K L + I + Sbjct: 133 ELRKQADDLDRIAQASVKTY----------------------------LSKSNGKIDEET 164 Query: 204 TLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSL 237 + L D W + EA GL D V + SL Sbjct: 165 LVKLLDEETWLSAQEAVDYGLADEVLESNKAVASL 199 >gi|310790485|gb|EFQ26018.1| ATP-dependent Clp protease proteolytic subunit [Glomerella graminicola M1.001] Length = 248 Score = 58.9 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 67/212 (31%), Gaps = 26/212 (12%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G I+D S ++ ++ + D A+ + ++SPGGS +G AI+ + +K+ Sbjct: 59 IVCLNGAIDDTVSASIVAQLLWLESDSPDKAITMYINSPGGSVSSGLAIYDTMTYIKSPV 118 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + +A L + A S V L Sbjct: 119 STVCLGAASSMAALLLTGGEAGKRYALPHSSVMIHQPLG--------------------- 157 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216 N Q H E ++ + + + T Sbjct: 158 GTQGQASDILIYANQIQRIRKQINEIMKRHINKSFGQE--KYSLEEIHDMMERDKYLTAE 215 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 EAK++G+ID + + E D+ K Sbjct: 216 EAKEIGVIDEILTRREEKDLKEKDSTDEKKTK 247 >gi|317132346|ref|YP_004091660.1| peptidase S14 ClpP [Ethanoligenens harbinense YUAN-3] gi|315470325|gb|ADU26929.1| peptidase S14 ClpP [Ethanoligenens harbinense YUAN-3] Length = 319 Score = 58.9 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 64/190 (33%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I + D L++ L++ GG AG AI I +KP ++ V S Sbjct: 90 EHVIPQIVAVEEDPRIEGLLIVLNTVGGDVEAGLAIAELIS--GMKKPTVSLVLGGGHSI 147 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G ++ ++ A T+ + V V + A+ S + Sbjct: 148 GVPLAICASESFIAPTATMTIHPVRMNGIVVGVPQTLSYFDKMQDRIGKFVAQNSHIAPE 207 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 K + M + L G + G EA + GLID GG Sbjct: 208 RFKELMMHTGELV-----------------------LDVGTVLEGEEAVREGLIDHTGGL 244 Query: 231 EEVWQSLYAL 240 + LY + Sbjct: 245 SDAISCLYRM 254 >gi|302392320|ref|YP_003828140.1| peptidase S49 [Acetohalobium arabaticum DSM 5501] gi|302204397|gb|ADL13075.1| peptidase S49 [Acetohalobium arabaticum DSM 5501] Length = 282 Score = 58.9 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 68/220 (30%), Gaps = 37/220 (16%) Query: 41 IAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 I I GQIE + LI ++ + ++ +I++L++ GG AG AI Sbjct: 61 INIVGQIEGHRSLPPKNKTTKYEHLIPQLVAVEQNPKVKGVIITLNTVGGDIEAGLAISE 120 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 + + + + + ++ + + + +L Sbjct: 121 MLSSL--------------SKPTVSLVLGGGHSIGGPIAVATDKSFIAETATMTIHPIRL 166 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 + V + + +N + D F + + Sbjct: 167 TGKVIGVPQTYDYLDKMQDRVINFVSRHSNISNEDFRNLMFR---------TGELVRDV- 216 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 G + G EA G+ID VGG + ++L + K Sbjct: 217 -GTVLIGEEAVDKGMIDEVGGLSQAIKALKEKIDAEEDNK 255 >gi|118442934|ref|YP_878200.1| ATP-dependent Clp protease proteolytic subunit [Clostridium novyi NT] gi|118133390|gb|ABK60434.1| ATP-dependent clp protease proteolytic subunit [Clostridium novyi NT] Length = 233 Score = 58.9 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 68/221 (30%), Gaps = 39/221 (17%) Query: 40 RIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + I GQIE + LI ++ I +DS +++ L++ GG AG AI Sbjct: 37 VLPIIGQIEGHSALPPQSKATKYEHLIPQLVDIETNDSIEGVLIILNTVGGDVEAGLAIA 96 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 I + + + S + I + T ++ I + V + Sbjct: 97 EMINSLSKPSVSLVIGGGHSIGVPLATSADYSFISPSATMIIHPIRMNGLVLGVPQTFEY 156 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 + + +D R + +L Sbjct: 157 FNKMQERI--------------------------IDFITRTSKMKNETFRKLMLQTDDLL 190 Query: 208 SD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 +D G I G +A GLID VGG L + + R Sbjct: 191 NDMGTILIGKQAVDYGLIDEVGGLSSAINKLEDIIDNGDKR 231 >gi|295696208|ref|YP_003589446.1| peptidase S14 ClpP [Bacillus tusciae DSM 2912] gi|295411810|gb|ADG06302.1| peptidase S14 ClpP [Bacillus tusciae DSM 2912] Length = 257 Score = 58.9 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 65/212 (30%), Gaps = 37/212 (17%) Query: 41 IAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 I I GQIE + +I ++ ++D +++ L++ GG AG AI Sbjct: 54 ITIIGQIEGHIILPPQNKTTKYEHVIPQLVAAEQNDKVKGVLIVLNTVGGDVEAGLAIAE 113 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 I + KP +T V S G I+ A AE++ + + Sbjct: 114 MIATLT--KPTVTLVLGGGHSIGVPIAVAGQYSFIAESATMTIHPIRLTGMV-------- 163 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 + ++ S + ++ Sbjct: 164 --------IGAPASWEYLERMQERVVRFVVDHSKISEAQFRELMMKTGELAR-------D 208 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 G G +A + GLID +GG L + Sbjct: 209 IGTTVVGKDAVRYGLIDEIGGIGRALGKLREM 240 >gi|121535282|ref|ZP_01667096.1| peptidase S14, ClpP [Thermosinus carboxydivorans Nor1] gi|121306167|gb|EAX47095.1| peptidase S14, ClpP [Thermosinus carboxydivorans Nor1] Length = 260 Score = 58.5 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 67/238 (28%), Gaps = 37/238 (15%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALI 70 + SS V ++ + I GQIE + ++ +I I ++ L+ Sbjct: 44 IQVMGSSEVPTAKSNIHVMTIIGQIEGHMVLPPQNKTTKYEHVMPQIAAIEQNPDIEGLL 103 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + L++ GG AG AI I + + + +S Sbjct: 104 LLLNTVGGDVEAGLAIAELIASLSKPTVSLVLGGGHSIGVPIAVSAN------------- 150 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 + + + + + + + ++ + W Sbjct: 151 -----YSFIVESASMTIHPIRLTGLVIGAPSSFDYLEKMQERINRFVVSHSKITEKKWKE 205 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 L G G +A + GLID +GG + L L Q K Sbjct: 206 LLFKTGELSR-------DIGTNVVGRDAVRYGLIDELGGMAQAIAKLQELIRTQKETK 256 >gi|323487027|ref|ZP_08092339.1| translocation-enhancing protein TepA [Clostridium symbiosum WAL-14163] gi|323692069|ref|ZP_08106316.1| peptidase S14 ClpP [Clostridium symbiosum WAL-14673] gi|323399675|gb|EGA92061.1| translocation-enhancing protein TepA [Clostridium symbiosum WAL-14163] gi|323503869|gb|EGB19684.1| peptidase S14 ClpP [Clostridium symbiosum WAL-14673] Length = 269 Score = 58.5 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 71/230 (30%), Gaps = 37/230 (16%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 H+ I+I G+IE + ++ ++ I ++V +++ G Sbjct: 65 EEGGEGAHIHLISIIGEIEGHENLSGNTKTTKYEHILPKLAEIEDSREVDGVLVMINTVG 124 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G G A+ I + + + ++ + IV T ++ + + Sbjct: 125 GDVSCGLALAEMIASLSKPTVSLVIGDSHSIGVPLAVATDYSFIVPTGTMMIHPVRMSGT 184 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 D + + + + ++ R Sbjct: 185 VIGAVQTYDYFEMIQDRILNFVSGHSQIAYDQL-------------------------RR 219 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 + + L G + G++A K GLI VGG E Q L + +++ Sbjct: 220 LMLNTEMLTKDLGTVLVGSDAVKEGLICEVGGIREALQKLNRMVLERKEI 269 >gi|323179369|gb|EFZ64937.1| head-tail preconnector protein GP5 domain protein [Escherichia coli 1180] Length = 360 Score = 58.5 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 1/151 (0%) Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 I +++ +KPV ++ A SA L++ A + + +TS +GSIGV+ + L + Sbjct: 1 MIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYAGHLAQA 60 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 GV I + + K + + F + + Q MQ VD+++ F V+ + + + Sbjct: 61 GVDITLIYAGAHKVDGNQFEALPAEVRQDMQQRVDAAHRMFAEKVAMYTGLSVEAV-TGT 119 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + ++ G A K GL D + + + A Sbjct: 120 EAAVFEGQSAIKAGLADELINASDAISVMAA 150 >gi|160939827|ref|ZP_02087174.1| hypothetical protein CLOBOL_04718 [Clostridium bolteae ATCC BAA-613] gi|158437261|gb|EDP15026.1| hypothetical protein CLOBOL_04718 [Clostridium bolteae ATCC BAA-613] Length = 315 Score = 58.5 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 71/223 (31%), Gaps = 37/223 (16%) Query: 35 SPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYA 82 + I I G++E ++ ++ I DDS L+V L++ GG A Sbjct: 115 QRKIHLITIIGEVEGHENSSGSSKTTKYDHILPKLAEIEDDDSVDGLLVLLNTSGGDVDA 174 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 G AI I + + + +S + IV + T ++ + + Sbjct: 175 GLAIAEMIASLSLPTVSLVLGGSHSIGVPLAVSTNYSFIVPSGTMMIHPVRMTGMVIGTS 234 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 + + + + + ++ D Sbjct: 235 QTYEYFEMIQDRILTFVSNHADIAYDQLRELMHNTKMLTRDL------------------ 276 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 G + G +A + GLI+ VGG +E LYA+ D+ Sbjct: 277 -------GTVLVGTQAVEAGLINQVGGIKEALGKLYAMIDDRE 312 >gi|331671242|ref|ZP_08372061.1| minor capsid protein C (GPC) [Escherichia coli TA271] gi|331061535|gb|EGI33475.1| minor capsid protein C (GPC) [Escherichia coli TA271] Length = 294 Score = 58.1 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 1/138 (0%) Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 KPV ++M SAG L++ A++ + +T+ GSIGV+ + L+K GV I + Sbjct: 5 KPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIY 64 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216 S K + +P+S + + +Q +D++ F + VS + L + +++G Sbjct: 65 SGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVLDT-EAAVYSGQ 123 Query: 217 EAKKVGLIDVVGGQEEVW 234 EA GL D + + Sbjct: 124 EAIDAGLADELVNSTDAI 141 >gi|297734120|emb|CBI15367.3| unnamed protein product [Vitis vinifera] Length = 150 Score = 58.1 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 1/111 (0%) Query: 146 DKLGVSIKSVKSSPMKAEPSPF-SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 +K+G + + + + P ++ ++Y F + SR++ DK Sbjct: 30 EKIGFNKEIISRGRFAELTAAELRPFRPDEAELFAKSAWNAYKQFRDKTAFSRSMAVDKM 89 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 + GR+WTG +A GL+D +GG + + P Sbjct: 90 EEKAQGRVWTGKDAASRGLVDAIGGLSRAVAIAKQKANIPQDAPVGSYVYP 140 >gi|154502755|ref|ZP_02039815.1| hypothetical protein RUMGNA_00569 [Ruminococcus gnavus ATCC 29149] gi|153796638|gb|EDN79058.1| hypothetical protein RUMGNA_00569 [Ruminococcus gnavus ATCC 29149] Length = 229 Score = 58.1 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 71/228 (31%), Gaps = 37/228 (16%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 + + ++ + I G+IE + LI R+ + DD +++ L++ G Sbjct: 26 NGNGHKANIQLLTIIGEIEGHEAVSGNTKATKYEHLIPRLAEVEDDDEVDGVLILLNTLG 85 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G AG AI I + + + +S + IV + T +V + Sbjct: 86 GDVEAGLAIAEMIASLSKPTVSLVLGGSHSIGGPLAVSADYSFIVPSGTMIVHPVRSSGM 145 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + V + + + + + Q V D Sbjct: 146 FIGVIQSYRNMEKTQDRITRFIAAHSQITKERLEELMLDSTQLVKDV------------- 192 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 G + G +A + G+ID VGG + L + + Sbjct: 193 ------------GTMLEGEDAVREGMIDEVGGISMALKKLREMIRQKK 228 >gi|239626582|ref|ZP_04669613.1| peptidase S14 ClpP [Clostridiales bacterium 1_7_47_FAA] gi|239516728|gb|EEQ56594.1| peptidase S14 ClpP [Clostridiales bacterium 1_7_47FAA] Length = 252 Score = 58.1 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 68/223 (30%), Gaps = 37/223 (16%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 + I I G++E ++ ++ I DDS L+V L++ G Sbjct: 47 EDNQKQRKIHLITIIGEVEGHENSSGSSKTTKYDHILPKLAEIEDDDSVDGLLVLLNTSG 106 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G AG AI I + + + +S + IV + T ++ + + Sbjct: 107 GDVDAGLAIAEMIASLSLPTVSLVLGGSHSIGVPLAVSTNYSFIVPSGTMMIHPVRMTGM 166 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + + + + + ++ D Sbjct: 167 VIGTAQTYEYFEMIQDRILTFVASHADIAYDQLRDLMHNTKMLTRDL------------- 213 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 G + G +A + GLI+ VGG +E LY + Sbjct: 214 ------------GTVLVGEQAVEAGLINQVGGIKEALGKLYEM 244 >gi|253682717|ref|ZP_04863514.1| putative Clp protease [Clostridium botulinum D str. 1873] gi|253562429|gb|EES91881.1| putative Clp protease [Clostridium botulinum D str. 1873] Length = 231 Score = 57.7 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 69/221 (31%), Gaps = 39/221 (17%) Query: 40 RIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + I GQIE + +I ++ I +D+ +++ L++ GG AG AI Sbjct: 35 VLPIIGQIEGHSVLPPQSKATKYEHVIPQLVDIEMNDAIEGVLIILNTVGGDVEAGLAIA 94 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 I + + + + I + T +V I + V + Sbjct: 95 EMISSLSKPSVSLVIGGGHSIGVPLATCANYSFISPSATMIVHPIRMNGLVLGVPQTFEY 154 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 + + + + R++ +L Sbjct: 155 FNKMQERIIDFIKRTSKINKDTL--------------------------RSLMLQTDELL 188 Query: 208 SD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 +D G I G +A GLID VGG L + +S + Sbjct: 189 NDMGTILIGKQAVDYGLIDEVGGLSSAINKLEEIIDSKSKK 229 >gi|296120997|ref|YP_003628775.1| hypothetical protein Plim_0730 [Planctomyces limnophilus DSM 3776] gi|296013337|gb|ADG66576.1| protein of unknown function DUF107 [Planctomyces limnophilus DSM 3776] Length = 828 Score = 57.7 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 33/285 (11%), Positives = 75/285 (26%), Gaps = 25/285 (8%) Query: 26 SWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 S + V I + G I + L +I R LI+ + SPGG A Sbjct: 347 SMRIRPAEEQQKVGIIRLDGVINQMNGTFLRRQIARYQA-QGVELLIIEIDSPGGLATVS 405 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + I + K + A + E + + + P Sbjct: 406 SELAELIASLSEEKIRTVAWI----PRQAISGAAMVALGCDEIYMAPNAKMGDVQPIEAR 461 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 + V + + + + + +R S R + Sbjct: 462 PGEAFERVPDKVMTVIRATLLALAKQKGRPEAIAAAMADRGTRVFRMREKSSGRVWFMTE 521 Query: 204 TLVLSDGRIW-----------------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + G +W T A ++ + D + + + + + + Sbjct: 522 EEAEAAGDLWEKGPQLEETRGEMVITLTAPRAVELKMADGIVPDLDALKEKLGISAELRL 581 Query: 247 RKIK-DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + IK W + + ++ ++ G+ ++ Sbjct: 582 QPIKPSWVDSLVFVLNTTPMKVLLLMVALGALYLEAHFFTGILSI 626 >gi|225567906|ref|ZP_03776931.1| hypothetical protein CLOHYLEM_03979 [Clostridium hylemonae DSM 15053] gi|225163194|gb|EEG75813.1| hypothetical protein CLOHYLEM_03979 [Clostridium hylemonae DSM 15053] Length = 232 Score = 57.7 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 37/239 (15%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73 S + +S + + I G+IE + L+ + + + +++ L Sbjct: 19 SINLDENKSSHRIKLLTIIGEIEGHEAVSGNTKATKYEHLLPMLAEVEDSEEIEGMLILL 78 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 ++ GG AG +I I + + + +S + IV + T ++ + Sbjct: 79 NTLGGDVEAGLSIAEMIASLSKPTVSLVLGGSHSIGGPLAVSAQYSFIVPSGTMIIHPVR 138 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + V+ L + + + K + + + V D Sbjct: 139 SSGMFIGVEQSLRNMLRTQDRITRFLSKHSNMSQERIEKLMLNPTELVKDV--------- 189 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 G + G +A K GLID VGG + L+ + + +K K+ Sbjct: 190 ----------------GTLLEGEDAVKEGLIDEVGGMSQALHKLHEMIDGERQKKHKNM 232 >gi|219128394|ref|XP_002184399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404200|gb|EEC44148.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 216 Score = 57.7 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 3/151 (1%) Query: 85 AIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +Q+ + + V ++AAS GYL+SC ++ IVA+ +++GSIGV+ P V Sbjct: 53 LAAAQLQRFRDAGMQLTVAVEQVAASGGYLMSCVADRIVASPFAVLGSIGVISDIPNVYD 112 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L K G+ ++V + K +P + + + V+ F V ++R P Sbjct: 113 RLKKEGIEFQTVTAGKYKRTLTPTKKATKEDFDKTKKDVEDILVLFKEFVHQNR--PQLD 170 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 ++ G W G +A L D + ++V Sbjct: 171 IDQVATGETWFGKDALDRKLCDEIKTVDDVI 201 >gi|114566793|ref|YP_753947.1| peptidase S14, ClpP [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337728|gb|ABI68576.1| ATP-dependent Clp protease proteolytic subunit ClpP [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 267 Score = 57.7 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 57/192 (29%), Gaps = 25/192 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ + + L+V+L++ GG AG A+ I + I + + Sbjct: 94 EHIIPQLVAVEENPQIKGLLVALNTVGGDVEAGLALAEMIASLSKPTVSIVLGGGHSIGS 153 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + I + T + I + V + L V Sbjct: 154 TIAVCTNYSFIAPSATMTIHPIRLTGLVIGVPQTYEYLDKMQDRVV-------------- 199 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + R + G + G +A GLID VGG Sbjct: 200 ------RFVVEHSNISEEKFRELMFRMGDLARDI-----GTVLVGKDAVDCGLIDQVGGI 248 Query: 231 EEVWQSLYALGV 242 ++ ++ L Sbjct: 249 KDALNKIHELKN 260 >gi|167758267|ref|ZP_02430394.1| hypothetical protein CLOSCI_00605 [Clostridium scindens ATCC 35704] gi|167664164|gb|EDS08294.1| hypothetical protein CLOSCI_00605 [Clostridium scindens ATCC 35704] Length = 241 Score = 57.7 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 77/239 (32%), Gaps = 37/239 (15%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73 S + + + + + I G+IE + L+ + + + +++ L Sbjct: 28 SINLNENKDRHRIKLLTIIGEIEGHEAVAGNTKATKYEHLLPMLAEVEDSEEIEGVLILL 87 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 ++ GG AG +I I + + + +S + IV + T ++ + Sbjct: 88 NTMGGDVEAGLSIAEMIASLSKPTVSLVLGGSHSIGGPLAVSAKYSFIVPSGTMIIHPVR 147 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + V+ L + + + + + + + V D Sbjct: 148 SNGMFIGVEQSLRNMIRTQDRITRFLSQHSHMTQERIEELMLNPTELVKDV--------- 198 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 G + G EA K GLID VGG E L+ + +K ++ Sbjct: 199 ----------------GTLLEGEEAVKEGLIDEVGGMSEALNKLHEMIDQSRQKKYENM 241 >gi|221195242|ref|ZP_03568298.1| ATP-dependent Clp protease proteolytic subunit [Atopobium rimae ATCC 49626] gi|221185145|gb|EEE17536.1| ATP-dependent Clp protease proteolytic subunit [Atopobium rimae ATCC 49626] Length = 260 Score = 57.7 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 69/221 (31%), Gaps = 52/221 (23%) Query: 31 VEDNSPHVARIAIRGQIEDSQ-----------------ELIERIERISRDDSATALIVSL 73 V + P VA++ I G I D ++++ + +S D + V + Sbjct: 11 VTQDEPDVAKLTIYGDITDGSFFVLLFDKEDPSTTGGLDIVKALSELSDD--VKTVEVHI 68 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 +S GG G AI+ A++ + V+T A S +I A + + SL+ Sbjct: 69 NSYGGEVMQGVAIYNALR--DCGREVVTVCDGFACSIASVIFMAGSRRIMRPASLLMLHN 126 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 L K ++ ++ Sbjct: 127 PWVSARGNAQDLRKQADTLDTIA------------------------------ELSKTAY 156 Query: 194 SESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEV 233 ++ + + D W + +A + GL V G +E Sbjct: 157 MTGTSLDRETLDAVMDAETWVSPEQALEWGLATEVSGSKEA 197 >gi|220931715|ref|YP_002508623.1| peptidase S14 ClpP [Halothermothrix orenii H 168] gi|219993025|gb|ACL69628.1| peptidase S14 ClpP [Halothermothrix orenii H 168] Length = 264 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 70/217 (32%), Gaps = 37/217 (17%) Query: 41 IAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 I I GQIE + +I ++ + + L+V L++ GG AG AI Sbjct: 68 IPIVGQIEGHLVLPPKNKTTKYEHIIPQLVAVEENPKIKGLLVILNTVGGDIEAGLAISE 127 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 I + + + +S + IVA + + I + V + L Sbjct: 128 MINSMTKPTVSVVLGGGHSIGVPIAVSTDYSYIVATASMTIHPIRLTGMVIGVPQTYEYL 187 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 ++ + + + F +L+ + + + Sbjct: 188 D-------------------KMQDRVISFVTQHSRILPDHFRQLMFQ----TGELVRDV- 223 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 G + G EA G+ID VGG + L L + Sbjct: 224 -GTVLVGEEAVNHGIIDEVGGLNKAVNKLRELINRRE 259 >gi|302874673|ref|YP_003843306.1| peptidase S49 [Clostridium cellulovorans 743B] gi|307690713|ref|ZP_07633159.1| peptidase S49 [Clostridium cellulovorans 743B] gi|302577530|gb|ADL51542.1| peptidase S49 [Clostridium cellulovorans 743B] Length = 274 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 71/241 (29%), Gaps = 37/241 (15%) Query: 29 SHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSP 76 S V +A + I GQIE + +I ++ I +D ++ L++ Sbjct: 23 SEVPGIEERIAILPIIGQIEGHMVAPPQHKTTKYEHIIPQVVGIETNDKIEGALIILNTI 82 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GG AG AI I + + + + + I + T +V I + Sbjct: 83 GGDVEAGLAIAEMITSISKPTVSLVIGGGHSIGVPLATAAKYSYITTSATMIVHPIRMNG 142 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 V D + + + ++ + + Sbjct: 143 TVIGVPQTFDYFNKMQERIV--------EFVVRTSKVQRDSFISMMMKTDELLNDM---- 190 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 G I G +A + GLID VGG + L L + + + + Sbjct: 191 -------------GTILIGKQAVEKGLIDEVGGIKRALDKLEQLIEEVKKKNKANDKVKE 237 Query: 257 N 257 Sbjct: 238 E 238 >gi|225378146|ref|ZP_03755367.1| hypothetical protein ROSEINA2194_03806 [Roseburia inulinivorans DSM 16841] gi|225209952|gb|EEG92306.1| hypothetical protein ROSEINA2194_03806 [Roseburia inulinivorans DSM 16841] Length = 231 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 80/223 (35%), Gaps = 37/223 (16%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 +E ++ + I G+IE + ++ ++ + + + L++ L++ G Sbjct: 22 ELEHGEDRISMLTIIGEIEGHECLPAATKTTKYEHVLPKLAEVEENKNVDGLLLLLNTVG 81 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G +G AI + + KP ++ V + S G ++ +++ + + V Sbjct: 82 GDVESGLAIAEMVASI--DKPTVSLVLGGSHSIGVPLAVSTDYSFIVPSGTMVIHPVRMN 139 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + F ++ + ++ + + + L+ + Sbjct: 140 GTVIGAQ-----------------PTYDYFKQMQDRILKFVVQHSKAEQNRLEELMM-NT 181 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 I G I G +A + GLID +GG E + L+ L Sbjct: 182 GILTKDL-----GTILVGGQAVEEGLIDSIGGIHEAFAKLHQL 219 >gi|220929125|ref|YP_002506034.1| peptidase S14 ClpP [Clostridium cellulolyticum H10] gi|219999453|gb|ACL76054.1| peptidase S14 ClpP [Clostridium cellulolyticum H10] Length = 254 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 72/227 (31%), Gaps = 33/227 (14%) Query: 43 IRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I G I + +I ++ I L++ L++ GG AG AI + + Sbjct: 53 IEGHILLPPHNKTTKYEHIIPQLVAIEESKQIEGLLLVLNTVGGDVEAGLAISEMVSSL- 111 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 KP ++ V S G ++ ++N A ++ + + + Sbjct: 112 -SKPTVSLVLGGGHSIGVPMAVSANYSFIASSATMTIHPIRMNGLVIGVP---------- 160 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 F ++ + V + F L+ + + G + Sbjct: 161 -------QTYEYFDKMQERVVNFVCSHSGIKKEKFRELMLK-TGELANDV-----GTVLF 207 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 G EA + GLI+ VGG + + L L + ++ Sbjct: 208 GEEATQTGLINQVGGLSDAIKKLNELIEINRKKNAENPAQQPEGRLQ 254 >gi|303251830|ref|ZP_07338001.1| truncated periplasmic protease [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649260|gb|EFL79445.1| truncated periplasmic protease [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 129 Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 48/129 (37%), Gaps = 8/129 (6%) Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + + + K + E K Q Q ++ ++ F + V+++R P ++ G Sbjct: 1 MDVMTAGEYKRTVTLVGENTEKGKQKFQQELEETHQLFKQFVAQNR--PQLDIEKIATGE 58 Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 W G +A + L+D + +++ + +++ + + + Sbjct: 59 HWFGKQALALDLVDEINTSDDLLLNAIK------EKEVIELKFKQKKNLTQRLGEQVELS 112 Query: 272 LEDTIPLMK 280 +E+ I + Sbjct: 113 VENVIAKLL 121 >gi|20806897|ref|NP_622068.1| membrane-bound serine protease (ClpP class) [Thermoanaerobacter tengcongensis MB4] gi|20515371|gb|AAM23672.1| Membrane-bound serine protease (ClpP class) [Thermoanaerobacter tengcongensis MB4] Length = 441 Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 44/298 (14%), Positives = 92/298 (30%), Gaps = 41/298 (13%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-SQELIERIERIS 61 F ++KI ++L + + S V + + G I + IE + + Sbjct: 2 FTMRKILLTTILLVFI----ILPPSSLQATSTQNPVYVLTVDGPIVPVVADYIESGFKAA 57 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 D A+ +++ LS+PGG + I I V A Sbjct: 58 ERDGASCIVIELSTPGGLYTTTQKIVTQILNSPIPVVVYVSP-------------AGAWA 104 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 +A T + S + P + S ++ Q + Sbjct: 105 GSAGTFITLSANIAAMAPGSRIGAAHPVSIED-------------DSAMSEIQRQKITHD 151 Query: 182 VDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLID-VVGGQEEVWQSLYA 239 + ++E+R + + R +T EA LID ++ + + Sbjct: 152 AAAWIRS----IAENRGRDPKNAEMAVVESRSFTDTEALNANLIDLRANNLNDLLKKING 207 Query: 240 LGV---DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG-LWAVWNP 293 V D + +K P + Y ++ + + L+ + G + +++P Sbjct: 208 KTVKNFDGTTITLKTDGPIRYYPMTSVQKFLFAISDPNIAYLLMSAGILGIILELYHP 265 >gi|238917241|ref|YP_002930758.1| ATP-dependent Clp protease, protease subunit [Eubacterium eligens ATCC 27750] gi|238872601|gb|ACR72311.1| ATP-dependent Clp protease, protease subunit [Eubacterium eligens ATCC 27750] Length = 236 Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 71/233 (30%), Gaps = 55/233 (23%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL------------IERIERISRDDSATALIVSLSSP 76 + I I G+IE L + ++ I D ++ +++ Sbjct: 34 KDGAVTKNALQVITIIGEIEGHDNLPATSKATKYEHMLPKLAEIEMDKDIKGVLFIMNTV 93 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GG AG A+ I + +KP ++ + + S G ++ +++ T+ + V Sbjct: 94 GGDVSAGLALAEMIASM--KKPTVSLIIGDSHSIGVPLAVSTDYSFIVPTATMIIHPVRM 151 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 VQ D + ++ Sbjct: 152 NG--------------------------------TLIGVQQTYDYFERISDRITSFIATH 179 Query: 197 RNIPYDKTLVLSD---------GRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 N+ ++ + G + G +A + GLI VGG + L +L Sbjct: 180 SNVSKERVEKMMVDTTQLSKDLGTVLVGRQAVEEGLICEVGGISDALAKLDSL 232 >gi|99034762|ref|ZP_01314688.1| hypothetical protein Wendoof_01000499 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 199 Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 13/155 (8%) Query: 30 HVEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSP 76 E+N +A I + G + +++ E IE+ D+ +I+ + SP Sbjct: 31 TAENNVEKIAIIPVHGILTKKPGAFDDMLGMTSYEKIREEIEKALIDEEVETIILDIDSP 90 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GG + I + + K ++ ++ A SA Y I+ ++ ++ TS VGSIGV+ Sbjct: 91 GGEVNGLFDLSDFIYEARGLKKIVAIANDDAYSAAYAIASSAEKVLVTRTSGVGSIGVIA 150 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 + F +K G+ +V + K + +P + Sbjct: 151 SHIDQSGFDEKQGIKYTTVFAGKRKNDLNPHEPIT 185 >gi|225572062|ref|ZP_03780926.1| hypothetical protein RUMHYD_00356 [Blautia hydrogenotrophica DSM 10507] gi|225040497|gb|EEG50743.1| hypothetical protein RUMHYD_00356 [Blautia hydrogenotrophica DSM 10507] Length = 248 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 74/237 (31%), Gaps = 37/237 (15%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 + + I G++E + ++ ++ I D + L+V L++ G Sbjct: 29 EENSGKHRIHLLTIIGEVEGHESAPNHSKTTKYEHVLPKLAMIEDDQNVDGLLVLLNTVG 88 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G AG AI I + + + +S + +V + T ++ + Sbjct: 89 GDVEAGLAIAEMIASLSVPTVSLVLGGGHSIGVPMAVSADYSFVVPSATMVIHPVRSNGM 148 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + V + + S + + Q V D Sbjct: 149 FIGVAQTYRNMEKIQDRITSFIAGHSHITQQRLEELMLDTSQLVKDV------------- 195 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 G + G +A + GLID VGG +E L+ + + +K + N Sbjct: 196 ------------GTMLEGEDAVREGLIDEVGGIKEALAKLHQMIGENGQKKTVERNK 240 >gi|83589919|ref|YP_429928.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moorella thermoacetica ATCC 39073] gi|83572833|gb|ABC19385.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moorella thermoacetica ATCC 39073] Length = 259 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 68/190 (35%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ + +D S L+V L++ GG AG AI + V KPV++ V S Sbjct: 83 EHIIPQLVAVEQDPSIKGLLVVLNTVGGDVEAGLAIAEML--VSMSKPVVSLVLGGGHSI 140 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G IS A+N AET+ + + + + Sbjct: 141 GVPISVAANYSFIAETATMTIHPIRLTGLVIGVPQTYEYL-------------------- 180 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + H + R + L G I G +A +VGLID VGG Sbjct: 181 ---DKMQDRVIRFIVEHANISEQELRRLMFQTGELARDIGTILVGQDAVRVGLIDEVGGL 237 Query: 231 EEVWQSLYAL 240 + + L Sbjct: 238 ASAVRKVKEL 247 >gi|153853239|ref|ZP_01994648.1| hypothetical protein DORLON_00633 [Dorea longicatena DSM 13814] gi|149754025|gb|EDM63956.1| hypothetical protein DORLON_00633 [Dorea longicatena DSM 13814] Length = 250 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 78/235 (33%), Gaps = 37/235 (15%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73 S + ++ + + I G+IE + L+ + + L++ L Sbjct: 37 SANLEGSRDNHRIKLLTIVGEIEGHEAVSGNTKATKYEHLLPMLAEVEDSSKIDGLLILL 96 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 ++ GG AG +I I + + + +S + IV + T ++ + Sbjct: 97 NTLGGDVEAGLSIAEMIASLSKPTVSLVLGGSHSIGGPLAVSADYSFIVPSGTMVIHPVR 156 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + V+ LD + + + + + Sbjct: 157 SNGMFIGVQQSLDNMIRTQDRIT-----------------------RFLSEHSSMKQERI 193 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 E P + + G + G +A + GLID VGG + L+ + D++ +K Sbjct: 194 EELMLNPTELVKDV--GTLLEGKDAVREGLIDAVGGLSDALNKLHEMISDRNQKK 246 >gi|255655334|ref|ZP_05400743.1| translocation-enhancing protein TepA [Clostridium difficile QCD-23m63] Length = 244 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 66/236 (27%), Gaps = 37/236 (15%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVS 72 F + + I I G+IE + +I + I + ++V Sbjct: 31 FGTNEMPPQPPKDIQCITIIGEIEGHFIGNPQKKATKYEHIIPMLYSIEESNDVKGVLVV 90 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 L++ GG AG AI + + + + + + I T ++ + Sbjct: 91 LNTVGGDIEAGLAIAELLNSTSKKVVTLVLGGSHSIGVPLATAGDYSFIAPTATMIIHPV 150 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + + + Sbjct: 151 RTTGLVIGINETFEYFKKMQDRIIQ------------------------FIIRTSNIKKD 186 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 V E D+ + G + G EA GLID VGG +E + L L + K Sbjct: 187 VLEKLMHEKDELVS-DVGSVLIGKEAVDYGLIDEVGGLKEALKKLRELIKESEEEK 241 >gi|153871745|ref|ZP_02000839.1| Peptidase S49 [Beggiatoa sp. PS] gi|152071790|gb|EDN69162.1| Peptidase S49 [Beggiatoa sp. PS] Length = 163 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 12/119 (10%), Positives = 43/119 (36%), Gaps = 18/119 (15%) Query: 6 KKIKTRYVMLSLVTLTVV-----------YFSWSSHVEDNSPHVARIAIRGQIED----- 49 +K + +++L + + ++ + + H A I ++G I Sbjct: 37 RKWRVFFMLLFFIYIFLIYATILEPDWHRFIGENDETASADTHTALIEVQGIIASETEAS 96 Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + +++ + + +D+ +I+ ++SP + + ++ K + + Sbjct: 97 ADQIVSGLRKAFKDNKTKGVILRINSP--GVVQCKLVISMMKFDVCGKNTLKSQSMLWQ 153 >gi|167766697|ref|ZP_02438750.1| hypothetical protein CLOSS21_01203 [Clostridium sp. SS2/1] gi|317497526|ref|ZP_07955845.1| Clp protease [Lachnospiraceae bacterium 5_1_63FAA] gi|167711634|gb|EDS22213.1| hypothetical protein CLOSS21_01203 [Clostridium sp. SS2/1] gi|291558361|emb|CBL37161.1| Protease subunit of ATP-dependent Clp proteases [butyrate-producing bacterium SSC/2] gi|316895209|gb|EFV17372.1| Clp protease [Lachnospiraceae bacterium 5_1_63FAA] Length = 216 Score = 56.5 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 71/233 (30%), Gaps = 37/233 (15%) Query: 27 WSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLS 74 + + + I G+IE + +I + ++ +D+S +++ ++ Sbjct: 9 IEKFGQLQENGIFTMTIIGEIEGHQLSAQNAKTTKYEHMIPALAKVEQDESIKGILILIN 68 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 + GG G AI I + + + ++ + IV + T ++ + Sbjct: 69 TIGGDVECGLAIAELIASLSKPTVSLVLGGSHSIGVPLAVAADHSFIVKSATMMIHPVRS 128 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + V + + + V Sbjct: 129 SGTFIGVIQSYRNIEKIQDRI-----------------------TTFISDHCKMKKERVE 165 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 E + + G I +G EA K GLID +GG +E L + + Sbjct: 166 ELMLHIGQQVKDV--GMILSGEEAVKEGLIDEMGGIKEATDRLIEIINQSENK 216 >gi|213585527|ref|ZP_03367353.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 81 Score = 56.5 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 9/62 (14%) Query: 34 NSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGSAYAGE 84 +A I G I D +E +I D A+++ ++SPGGS A E Sbjct: 1 TGGTIAVIFANGAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGSVNASE 60 Query: 85 AI 86 I Sbjct: 61 VI 62 >gi|168187899|ref|ZP_02622534.1| Clp protease [Clostridium botulinum C str. Eklund] gi|169294242|gb|EDS76375.1| Clp protease [Clostridium botulinum C str. Eklund] Length = 232 Score = 56.5 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 70/221 (31%), Gaps = 39/221 (17%) Query: 40 RIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + I GQIE + LI ++ I +D+ +++ L++ GG AG AI Sbjct: 37 VLPIIGQIEGHSVLPPQSKATKYEHLIPQLVDIETNDAIEGVLIILNTVGGDVEAGLAIA 96 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 I + + + S + I + T ++ I + V + Sbjct: 97 EMINSLSKPSVSLVIGGGHSIGVPLATSADYSFISPSATMIIHPIRMNGLVLGVPQTFEY 156 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 + + +D R++ +L Sbjct: 157 FNKMQERI--------------------------IDFITRTSKMKNETFRSLMLQTDELL 190 Query: 208 SD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 +D G I G +A GLID VGG L + ++ + Sbjct: 191 NDMGTILIGKQAVDYGLIDEVGGLSSAINKLEDIIDNRDKK 231 >gi|302404698|ref|XP_003000186.1| ATP-dependent Clp protease proteolytic subunit [Verticillium albo-atrum VaMs.102] gi|261360843|gb|EEY23271.1| ATP-dependent Clp protease proteolytic subunit [Verticillium albo-atrum VaMs.102] Length = 238 Score = 56.5 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 28/196 (14%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D S ++ ++ + D+ A+ + ++SPGGS +G AI+ + +K+ Sbjct: 51 IICLNGAIDDTVSASIVAQLLWLESDNPDKAITLYINSPGGSVTSGLAIYDTMTYIKSPV 110 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A S V L + + + ++ Sbjct: 111 STVCLGAASSMGALLLTGGEAGKRYALPHSSVMIHQPLG---GTQGQASDILIYAHQIQR 167 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN-IPYDKTLVLSD-GRIWTG 215 K +N + R+ + + + + T Sbjct: 168 VRTKLNEIMRRHLNA---------------------AFGRDRYSLAEVNDMMERDKYLTP 206 Query: 216 AEAKKVGLIDVVGGQE 231 EAK++G+ID + + Sbjct: 207 EEAKEMGVIDEILTRR 222 >gi|325578441|ref|ZP_08148576.1| protease SohB [Haemophilus parainfluenzae ATCC 33392] gi|325160177|gb|EGC72306.1| protease SohB [Haemophilus parainfluenzae ATCC 33392] Length = 128 Score = 56.5 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 3/104 (2%) Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 + + K + E K Q Q ++ ++ F + V+++R P+ ++ G W Sbjct: 1 MITAGEFKRTVTVLGENTEKGKQKFQAELEETHQLFKQFVAQNR--PHLDVDKVATGEHW 58 Query: 214 TGAEAKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256 G +A + L+D + +++ + + V K+K K Sbjct: 59 FGQQALALQLVDELATSDDIILEKMKDKSVIAVKYKVKKPLLQK 102 >gi|317052268|ref|YP_004113384.1| hypothetical protein Selin_2108 [Desulfurispirillum indicum S5] gi|316947352|gb|ADU66828.1| protein of unknown function DUF107 [Desulfurispirillum indicum S5] Length = 462 Score = 56.5 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 74/225 (32%), Gaps = 18/225 (8%) Query: 7 KIKTRYVMLSLVTLTVVYFS-WSSHVEDNSPHVARIAIRGQIEDSQ-ELIERIERISRDD 64 + ++ L + FS ++ E +SP + I + G I + + ++R + + D+ Sbjct: 4 YRLFFFSLILFAGLGLGLFSQLAAQPEASSPRIVVIDLEGPIGPAVGDFVKRSLQKAADE 63 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 A ++ +++PGG + I +AI + + + A AA Sbjct: 64 QVDAAVLRMNTPGGLDSSMRDIIQAI---------------LDSPLPVISYVAPTGARAA 108 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 L S A + M + + Sbjct: 109 SAGTYILYASHVAAMAPSTNLGAATPVQISGGGPLGGAGDDDKEGEKAASEDAMGRKIVN 168 Query: 185 SYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVG 228 ++R ++E + + +G T +EA + +ID++ Sbjct: 169 DAVAYIRGLAELHGRNAEWAEESVREGASLTSSEALEKNVIDIIA 213 >gi|294851554|ref|ZP_06792227.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026] gi|294820143|gb|EFG37142.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026] Length = 116 Score = 56.2 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 34/54 (62%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSP 76 F + N PH+A++ I G I +++EL++R+++I+ DD+ +I+ L SP Sbjct: 40 FAFYSLRSAKFNQPHIAKVRIEGTIFENEELLKRLDKIAGDDAVKGVILLLDSP 93 >gi|238484703|ref|XP_002373590.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aspergillus flavus NRRL3357] gi|317140707|ref|XP_001818368.2| ATP-dependent Clp protease proteolytic subunit [Aspergillus oryzae RIB40] gi|220701640|gb|EED57978.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aspergillus flavus NRRL3357] Length = 256 Score = 56.2 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 64/212 (30%), Gaps = 31/212 (14%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++++ S ++ ++ + D+ + + ++SPGGS AG AI+ + + + Sbjct: 71 IICLNGEVDETMSASIVAQLLFLEADNPQKPIHLYINSPGGSVTAGLAIYDTMTYIASPV 130 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L S + Y + I V+ Sbjct: 131 STICVGQAASMGSLLLCGGHPGKRYCLPHSSIMIHQPSGGYFGQATDIAIHAKEILRVRE 190 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 K + D+ L + + G Sbjct: 191 QLNKIYKRHLTGKKEL--------------------------SLDEIEKLMERDYFMGAQ 224 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 EA ++G++D + + +S G Sbjct: 225 EALEMGIVDEI--LDRRVRSKEERGEGDEKPP 254 >gi|83766223|dbj|BAE56366.1| unnamed protein product [Aspergillus oryzae] Length = 267 Score = 56.2 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 64/212 (30%), Gaps = 31/212 (14%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++++ S ++ ++ + D+ + + ++SPGGS AG AI+ + + + Sbjct: 82 IICLNGEVDETMSASIVAQLLFLEADNPQKPIHLYINSPGGSVTAGLAIYDTMTYIASPV 141 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L S + Y + I V+ Sbjct: 142 STICVGQAASMGSLLLCGGHPGKRYCLPHSSIMIHQPSGGYFGQATDIAIHAKEILRVRE 201 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 K + D+ L + + G Sbjct: 202 QLNKIYKRHLTGKKEL--------------------------SLDEIEKLMERDYFMGAQ 235 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 EA ++G++D + + +S G Sbjct: 236 EALEMGIVDEI--LDRRVRSKEERGEGDEKPP 265 >gi|296451320|ref|ZP_06893060.1| ATP-dependent Clp protease proteolytic subunit [Clostridium difficile NAP08] gi|296880328|ref|ZP_06904291.1| ATP-dependent Clp protease proteolytic subunit [Clostridium difficile NAP07] gi|296259926|gb|EFH06781.1| ATP-dependent Clp protease proteolytic subunit [Clostridium difficile NAP08] gi|296428569|gb|EFH14453.1| ATP-dependent Clp protease proteolytic subunit [Clostridium difficile NAP07] Length = 252 Score = 56.2 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 66/236 (27%), Gaps = 37/236 (15%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVS 72 F + + I I G+IE + +I + I + ++V Sbjct: 39 FGTNEMPPQPPKDIQCITIIGEIEGHFIGNPQKKATKYEHIIPMLYSIEESNDVKGVLVV 98 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 L++ GG AG AI + + + + + + I T ++ + Sbjct: 99 LNTVGGDIEAGLAIAELLNSTSKKVVTLVLGGSHSIGVPLATAGDYSFIAPTATMIIHPV 158 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + + + Sbjct: 159 RTTGLVIGINETFEYFKKMQDRIIQ------------------------FIIRTSNIKKD 194 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 V E D+ + G + G EA GLID VGG +E + L L + K Sbjct: 195 VLEKLMHEKDELVS-DVGSVLIGKEAVDYGLIDEVGGLKEALKKLRELIKESEEEK 249 >gi|126698922|ref|YP_001087819.1| translocation-enhancing protein TepA [Clostridium difficile 630] gi|254974868|ref|ZP_05271340.1| translocation-enhancing protein TepA [Clostridium difficile QCD-66c26] gi|255092255|ref|ZP_05321733.1| translocation-enhancing protein TepA [Clostridium difficile CIP 107932] gi|255100344|ref|ZP_05329321.1| translocation-enhancing protein TepA [Clostridium difficile QCD-63q42] gi|255306281|ref|ZP_05350452.1| translocation-enhancing protein TepA [Clostridium difficile ATCC 43255] gi|255313995|ref|ZP_05355578.1| translocation-enhancing protein TepA [Clostridium difficile QCD-76w55] gi|255516675|ref|ZP_05384351.1| translocation-enhancing protein TepA [Clostridium difficile QCD-97b34] gi|255649774|ref|ZP_05396676.1| translocation-enhancing protein TepA [Clostridium difficile QCD-37x79] gi|260682931|ref|YP_003214216.1| translocation-enhancing protein TepA [Clostridium difficile CD196] gi|260686529|ref|YP_003217662.1| translocation-enhancing protein TepA [Clostridium difficile R20291] gi|306519879|ref|ZP_07406226.1| translocation-enhancing protein TepA [Clostridium difficile QCD-32g58] gi|115250359|emb|CAJ68181.1| Protein export-enhancing factor [Clostridium difficile] gi|260209094|emb|CBA62253.1| translocation-enhancing protein TepA [Clostridium difficile CD196] gi|260212545|emb|CBE03509.1| translocation-enhancing protein TepA [Clostridium difficile R20291] Length = 244 Score = 56.2 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 66/236 (27%), Gaps = 37/236 (15%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVS 72 F + + I I G+IE + +I + I + ++V Sbjct: 31 FGTNEMPPQPPKDIQCITIIGEIEGHFIGNPQKKATKYEHIIPMLYSIEESNDVKGVLVV 90 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 L++ GG AG AI + + + + + + I T ++ + Sbjct: 91 LNTVGGDIEAGLAIAELLNSTSKKVVTLVLGGSHSIGVPLATAGDYSFIAPTATMIIHPV 150 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + + + Sbjct: 151 RTTGLVIGINETFEYFKKMQDRIIQ------------------------FIIRTSNIKKD 186 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 V E D+ + G + G EA GLID VGG +E + L L + K Sbjct: 187 VLEKLMHEKDELVS-DVGSVLIGKEAVDYGLIDEVGGLKEALKKLRELIKESEEEK 241 >gi|331269619|ref|YP_004396111.1| peptidase S14, ClpP [Clostridium botulinum BKT015925] gi|329126169|gb|AEB76114.1| peptidase S14, ClpP [Clostridium botulinum BKT015925] Length = 231 Score = 56.2 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 68/221 (30%), Gaps = 39/221 (17%) Query: 40 RIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + I GQIE + +I ++ I +D +++ L++ GG AG AI Sbjct: 35 VLPIIGQIEGHSVLPPQSKATKYEHVIPQLVDIEMNDDIEGVLIILNTVGGDVEAGLAIA 94 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 I + + + + I + T +V I + V + Sbjct: 95 EMISSLSKPSVSLVIGGGHSIGVPLATCADYSFISPSATMIVHPIRMNGLVLGVPQTFEY 154 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 + + + + R++ +L Sbjct: 155 FNKMQERIIDFIKRTSKINKDTL--------------------------RSLMLQTDELL 188 Query: 208 SD-GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 +D G I G +A GLID VGG L + +S + Sbjct: 189 NDMGTILIGKQAVDYGLIDEVGGLSSAINKLEEIIDSKSKK 229 >gi|145233903|ref|XP_001400324.1| ATP-dependent Clp protease proteolytic subunit [Aspergillus niger CBS 513.88] gi|134057262|emb|CAK96425.1| unnamed protein product [Aspergillus niger] Length = 251 Score = 55.8 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 62/197 (31%), Gaps = 29/197 (14%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++++ S ++ ++ + D+ + + ++SPGGS AG AI+ + + + Sbjct: 71 IICLNGEVDETMSASIVAQLLFLEADNPQKPIHLYINSPGGSVTAGLAIYDTMTYIASPV 130 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L S + Y + I V+S Sbjct: 131 STICVGQAASMGSLLLCGGHPGKRFCLPHSSIMMHQPSGGYFGQASDIAIHAKEILRVRS 190 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 K + + D+ L + + G Sbjct: 191 QLNKIYKRHLTGKKE--------------------------MTLDEIEKLMERDYFMGAK 224 Query: 217 EAKKVGLIDVVGGQEEV 233 EA +G++D + + Sbjct: 225 EALDMGIVDEILDRRAA 241 >gi|297617218|ref|YP_003702377.1| peptidase S14 ClpP [Syntrophothermus lipocalidus DSM 12680] gi|297145055|gb|ADI01812.1| peptidase S14 ClpP [Syntrophothermus lipocalidus DSM 12680] Length = 236 Score = 55.8 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 57/196 (29%), Gaps = 25/196 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ + + L+V L++ GG AG A+ I + I + Sbjct: 64 EHVIPQLVAVEENPDIRGLLVILNTVGGDVEAGLALAEMIASMSKPSVSIVLGGGHSIGV 123 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +S + + I T + I + V + L V Sbjct: 124 TLAVSTSYSFIAHTATMTIHPIRLTGLVIGVPQTYEYLDKMQDRVVR------------- 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 R + G + G +A +GLID VGG Sbjct: 171 -------FVTEHSKVSESQFRELMFRTGELARDI-----GTVLVGKDAVDIGLIDEVGGI 218 Query: 231 EEVWQSLYALGVDQSI 246 +E L L + I Sbjct: 219 KEALAKLRGLINHKGI 234 >gi|219669156|ref|YP_002459591.1| peptidase S14 ClpP [Desulfitobacterium hafniense DCB-2] gi|219539416|gb|ACL21155.1| peptidase S14 ClpP [Desulfitobacterium hafniense DCB-2] Length = 230 Score = 55.8 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 70/229 (30%), Gaps = 37/229 (16%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 + + S + + + GQIE + +I ++ + ++ +++ L++ G Sbjct: 26 RIPEPSESIYCLTVVGQIEGHQVLSAQTKATKYEHVIPQLFAVEQNPKVEGILLILNTAG 85 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G AG AI + + I + +SC + I T + I Sbjct: 86 GDVEAGLAISELVSSLSKPSVSIVLGGGHSIGIPIAVSCDRSFIAPTGTMTLHPIRYTGL 145 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 D L + + S ++ + + Sbjct: 146 VINGHQQFDYLQKMQERINS--------------------FIIQHSQITEEQLKKLMFAT 185 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 G I G +A +GLID VGG +E + L L + Sbjct: 186 GELAQDI-----GTILIGQDAVDIGLIDAVGGLKEAYGELKRLIGSKRE 229 >gi|118361832|ref|XP_001014144.1| hypothetical protein TTHERM_00406670 [Tetrahymena thermophila] gi|89295911|gb|EAR93899.1| hypothetical protein TTHERM_00406670 [Tetrahymena thermophila SB210] Length = 279 Score = 55.8 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 81/219 (36%), Gaps = 14/219 (6%) Query: 30 HVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 E + VA I +I + + ++ +A A+ + +S+ S I Sbjct: 16 SREISKQAVAVCRIH-RINAQTTFNVQRVLNKAAKHKNA-AVALVISADSSSYAQAYNII 73 Query: 88 RAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 + IQ + + PV T E S GYLI CA TSLVG++GV + + ++ + Sbjct: 74 KQIQIFQKNTKIPVYTFGEEQVFSGGYLILCAGQKSFVDNTSLVGNLGVNYTHTNIEKLV 133 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204 K + + A ++ + + + H +++ + K Sbjct: 134 TKTLDFTINDFHTSDIAFSHRADSLSKQKEDNEEFFRQFNSHLQDQVIQTFEGLRKPKVK 193 Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 L G I+ G +A + GL+D +G V Sbjct: 194 MQPELYQNDLLQGEIYNGKKAVEYGLVDEIGTYYSVINK 232 >gi|325661480|ref|ZP_08150105.1| hypothetical protein HMPREF0490_00839 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472196|gb|EGC75409.1| hypothetical protein HMPREF0490_00839 [Lachnospiraceae bacterium 4_1_37FAA] Length = 232 Score = 55.8 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 69/223 (30%), Gaps = 37/223 (16%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 + + + I G+IE + L+ ++ I ++ +++ L++ G Sbjct: 29 DKDREKHRIQLLTIIGEIEGHEAVSGNTKATKYEHLLPKLAEIEDNEEIDGVLILLNTMG 88 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G AG AI I + + + +S + IV + T +V + Sbjct: 89 GDVEAGLAIAEMIASLSKPTVSLVLGGSHSIGGPLAVSADYSFIVPSGTMIVHPVRSTGM 148 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + V + + + + V E Sbjct: 149 FIGVLQSYKNMERTQDRIT-----------------------RFLAEHSRISQERVEELM 185 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 + G + G +A + GLID VGG + + L A+ Sbjct: 186 LDSTQLVKDV--GTLLEGEDAVREGLIDAVGGISDALKKLQAM 226 >gi|331084957|ref|ZP_08334044.1| hypothetical protein HMPREF0987_00347 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408657|gb|EGG88122.1| hypothetical protein HMPREF0987_00347 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 229 Score = 55.4 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 69/223 (30%), Gaps = 37/223 (16%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 + + + I G+IE + L+ ++ I ++ +++ L++ G Sbjct: 26 DKDREKHRIQLLTIIGEIEGHEAVSGNTKATKYEHLLPKLAEIEDNEEIDGVLILLNTMG 85 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G AG AI I + + + +S + IV + T +V + Sbjct: 86 GDVEAGLAIAEMIASLSKPTVSLVLGGSHSIGGPLAVSADYSFIVPSGTMIVHPVRSTGM 145 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + V + + + + V E Sbjct: 146 FIGVLQSYKNMERTQDRIT-----------------------RFLAEHSRISQDRVEELM 182 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 + G + G +A + GLID VGG + + L A+ Sbjct: 183 LDSTQLVKDV--GTLLEGEDAVREGLIDAVGGISDALKKLQAM 223 >gi|317121875|ref|YP_004101878.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermaerobacter marianensis DSM 12885] gi|315591855|gb|ADU51151.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermaerobacter marianensis DSM 12885] Length = 347 Score = 55.4 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 77/227 (33%), Gaps = 37/227 (16%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73 + V + P + + I GQ+E + +I ++ + ++ + L+V L Sbjct: 57 MGTDRVPQSPPDIHVLTIVGQVEGHLQLPAQNKTTKYEHIIPQLVAVEQNPAIKGLLVIL 116 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 ++ GG AG A+ I+ + K I + ++ + I T + I Sbjct: 117 NTVGGDVEAGLALAELIRSLSKPKVSIVLGGGHSIGVPIAVAADISFIAPTATMTIHPIR 176 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + V + L + + E + + ++++ + + Sbjct: 177 LTGLVIGVPQSYEYLDKMQERI--------IRFVVENSRISRDRFRELMFRTGELARDI- 227 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 G + G +A + GLID VGG + Q L L Sbjct: 228 ----------------GTVLVGEDAVREGLIDEVGGLAQAVQRLNQL 258 >gi|313901853|ref|ZP_07835274.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermaerobacter subterraneus DSM 13965] gi|313467896|gb|EFR63389.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermaerobacter subterraneus DSM 13965] Length = 324 Score = 55.4 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 77/227 (33%), Gaps = 37/227 (16%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73 + V + P + + I GQ+E + +I ++ + ++ + L+V L Sbjct: 58 MGTDRVPQSPPDIHVLTIVGQVEGHLQLPAQNKTTKYEHIIPQLVAVEQNPAIKGLLVIL 117 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 ++ GG AG A+ I+ + K I + ++ + I T + I Sbjct: 118 NTVGGDVEAGLALAELIRSLSKPKVSIVLGGGHSIGVPIAVAADVSFIAPTATMTIHPIR 177 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + V + L + + E + + ++++ + + Sbjct: 178 LTGLVIGVPQSYEYLDKMQERI--------IRFVVENSRISRDRFRELMFRTGELARDI- 228 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 G + G +A + GLID VGG + Q L L Sbjct: 229 ----------------GTVLVGEDAVREGLIDEVGGLAQAVQRLNQL 259 >gi|296132914|ref|YP_003640161.1| peptidase S49 [Thermincola sp. JR] gi|296031492|gb|ADG82260.1| peptidase S49 [Thermincola potens JR] Length = 270 Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 67/192 (34%), Gaps = 29/192 (15%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ + + ++V L++ GG AG AI I KP ++ V S Sbjct: 93 EHIIPQLVALEENPEIEGVLVVLNTIGGDVEAGLAIAEMI--TSMSKPTVSLVLGGGHSI 150 Query: 111 GYLISCASNIIVAAETSLVGSIGVL--FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 G I+ A++ AET+ + + V + L V + +K + Sbjct: 151 GVPIAVATDYSFIAETAGMTVHPIRLTGLVIGVPQTYEYLDKMQDRVVNFIIKHSKISEA 210 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 ++ + + D G + G +A VGLID VG Sbjct: 211 KLRELMFRTGELARDI-------------------------GAVLIGKDAVDVGLIDEVG 245 Query: 229 GQEEVWQSLYAL 240 G + L L Sbjct: 246 GVSQAMNKLREL 257 >gi|160934088|ref|ZP_02081475.1| hypothetical protein CLOLEP_02951 [Clostridium leptum DSM 753] gi|156866761|gb|EDO60133.1| hypothetical protein CLOLEP_02951 [Clostridium leptum DSM 753] Length = 291 Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 67/198 (33%), Gaps = 25/198 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + ++ ++ I + L+V L++ GG AG AI + +KP ++ V S Sbjct: 86 EHVLPQLVAIEEEPRIDGLLVLLNTVGGDVEAGLAIAELLA--GMKKPTVSMVLGGGHSI 143 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G ++ A+ A+++ + V + + Sbjct: 144 GVPLAVAAKKSFIAKSASMTIHPVRMSGLVL-----------------------GVPQTL 180 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + + + + LV+ G + G +A K GLID +G Sbjct: 181 EYFQRMQDRITSFVAENSNITPERFYELSMNTEELVMDVGTVLDGEDAVKEGLIDRLGNL 240 Query: 231 EEVWQSLYALGVDQSIRK 248 + Q LY + + K Sbjct: 241 SDALQCLYDMIDEYRASK 258 >gi|212639505|ref|YP_002316025.1| protease subunit of ATP-dependent Clp protease [Anoxybacillus flavithermus WK1] gi|212560985|gb|ACJ34040.1| Protease subunit of ATP-dependent Clp protease [Anoxybacillus flavithermus WK1] Length = 237 Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 64/206 (31%), Gaps = 33/206 (16%) Query: 43 IRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I G I + LI +I I ++ + L+V L++ GG AG AI + + Sbjct: 45 IEGHIQLPPQNKTTKYEHLIPQIVAIEQNPNIEGLLVVLNTVGGDVEAGLAIAEMLASMS 104 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 I + +SC + I T + I + V + L + Sbjct: 105 KPTVSIVLGGGHSIGVPIAVSCDYSFIAETATMTIHPIRLTGLVIGVPQTFEYLDKMQER 164 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 V + +K ++ D G Sbjct: 165 VVNFVVKHSNISEEKLKELMFSKGNLTRDI-------------------------GTNVV 199 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYAL 240 G +A K GLID VGG + + L L Sbjct: 200 GTDAVKYGLIDEVGGLSQAMRKLREL 225 >gi|311030070|ref|ZP_07708160.1| protein export-enhancing factor [Bacillus sp. m3-13] Length = 252 Score = 55.0 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 66/201 (32%), Gaps = 25/201 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ + L+V L++ GG AG AI + + + + Sbjct: 72 EHVIPQIVAIEQNPNIEGLLVILNTVGGDVEAGLAISEMLASLSKPTVSLVLGGGHSIGV 131 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +SC + I T + + + V + L V + K P + Sbjct: 132 PIAVSCDYSFIAETATMTIHPVRLTGLVIGVPQTFEYLDKMQDRVINFVTKNSGIPEEKF 191 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + D G GA+A + GLID VGG Sbjct: 192 KELMLSKGNLTRDI-------------------------GTNVVGADAVEYGLIDQVGGV 226 Query: 231 EEVWQSLYALGVDQSIRKIKD 251 E + L + ++ K ++ Sbjct: 227 GEAIRKLNEMVEAKNPNKTQE 247 >gi|89894720|ref|YP_518207.1| hypothetical protein DSY1974 [Desulfitobacterium hafniense Y51] gi|89334168|dbj|BAE83763.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 209 Score = 55.0 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 70/229 (30%), Gaps = 37/229 (16%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 + + S + + + GQIE + +I ++ + ++ +++ L++ G Sbjct: 5 RIPEPSESIYCLTVVGQIEGHQVLSAQTKATKYEHVIPQLFAVEQNPKVEGILLILNTAG 64 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G AG AI + + I + +SC + I T + I Sbjct: 65 GDVEAGLAISELVSSLSKPSVSIVLGGGHSIGIPIAVSCDRSFIAPTGTMTLHPIRYTGL 124 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 D L + + S ++ + + Sbjct: 125 VINGHQQFDYLQKMQERINS--------------------FIIQHSRITEEQLKKLMFAT 164 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 G I G +A +GLID VGG +E + L L + Sbjct: 165 GELAQDI-----GTILIGQDAVDIGLIDAVGGLKEAYGELKRLIGSKRE 208 >gi|251797382|ref|YP_003012113.1| peptidase S14 ClpP [Paenibacillus sp. JDR-2] gi|247545008|gb|ACT02027.1| peptidase S14 ClpP [Paenibacillus sp. JDR-2] Length = 247 Score = 55.0 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 25/187 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + LI ++ ++ +++ L++ GG AG AI I + + + Sbjct: 69 EHLIPQLVAAEQNSKIEGILIVLNTVGGDVEAGLAIAEMISSLSKPTVTLVLGGGHSIGV 128 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 ++ + I A T + I + V + L + + + Sbjct: 129 PIAVAGNMSFIAATATMTIHPIRLNGLVIGVPQTFEYLDKMQERILKFVTMHSNVTEEKF 188 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + D G G++A K GLID VGG Sbjct: 189 KELMFKTGELTRDI-------------------------GTTVIGSDAVKYGLIDAVGGL 223 Query: 231 EEVWQSL 237 + + L Sbjct: 224 GDALREL 230 >gi|257414294|ref|ZP_04745868.2| Clp protease [Roseburia intestinalis L1-82] gi|257200551|gb|EEU98835.1| Clp protease [Roseburia intestinalis L1-82] gi|291538992|emb|CBL12103.1| Protease subunit of ATP-dependent Clp proteases [Roseburia intestinalis XB6B4] Length = 252 Score = 55.0 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 70/218 (32%), Gaps = 37/218 (16%) Query: 35 SPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYA 82 ++ + I G+IE + ++ ++ + + L++ L++ GG + Sbjct: 56 KNKISLLTIIGEIEGHDCLPATTKTTKYEHVLPKLAELEDNPDTEGLLLLLNTVGGDVES 115 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 G AI I ++ + + +S + IV + T ++ + + K Sbjct: 116 GLAIAEMIASIRKPTVSLVLGGSHSIGVPLAVSTDYSFIVPSGTMVIHPVRMSGTVIGAK 175 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 P D + + + + + I Sbjct: 176 PTYDYFKQMQDRIVHFISTHSKASEKRLEELMM--------------------NTGILTK 215 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 G I G EA + GLI+ VGG + + L+ + Sbjct: 216 DL-----GTILVGKEAVEEGLINEVGGISDAFSRLHQM 248 >gi|82702168|ref|YP_411734.1| hypothetical protein Nmul_A1039 [Nitrosospira multiformis ATCC 25196] gi|82410233|gb|ABB74342.1| Protein of unknown function DUF107 [Nitrosospira multiformis ATCC 25196] Length = 456 Score = 55.0 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 35/246 (14%), Positives = 84/246 (34%), Gaps = 22/246 (8%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIE 58 M+ +++ + + + + ++V S V + I G I + + +E Sbjct: 1 MKLLIRTLFVSVLAMLFLLPSIVRASP----------VVVLKIDGPIAPASADFIQRGLE 50 Query: 59 RISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 R + +++A +++ L +PGG + I + + AASAG I A Sbjct: 51 RAA-NENALLVVLQLDTPGGLDTSMRQIIRGVLASPLPVATFVAPSGARAASAGTYILYA 109 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 S+ ++ + P + + S +P E Sbjct: 110 SH-----IAAMAPGTNLGAATPIEMGGFPRSEPEPRPQPKSGENRAQNPEKEGQLPVKDE 164 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 M + ++R +++ R + + + + +EA + ++D + ++ Sbjct: 165 MSRKMIHDAAAYIRGLAQMRGRNVEWAERAVREAVSLSASEALHLKVVDYIAT--DIADL 222 Query: 237 LYALGV 242 L L Sbjct: 223 LKQLNG 228 >gi|268323951|emb|CBH37539.1| conserved hypothetical membrane protein, containing NfeD-like domain [uncultured archaeon] gi|268325361|emb|CBH38949.1| conserved hypothetical membrane protein, containing NfeD-like domain [uncultured archaeon] gi|268325946|emb|CBH39534.1| conserved hypothetical membrane protein, containing NfeD-like domain [uncultured archaeon] Length = 443 Score = 55.0 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERISRD 63 KK+ ++++ ++++ + ++ E+ + + + G I + ++E + Sbjct: 3 KKLLRLFLIVLVLSVLFAFVAYGGGAEEGKRVIYVLNLEGTITEGSTLNVVEGFKEAEEI 62 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQK 92 A A++V L +PGG + I + I Sbjct: 63 -GADAVLVKLDTPGGLVGSTLEITKEIMN 90 >gi|160892565|ref|ZP_02073355.1| hypothetical protein CLOL250_00094 [Clostridium sp. L2-50] gi|156865606|gb|EDO59037.1| hypothetical protein CLOL250_00094 [Clostridium sp. L2-50] Length = 219 Score = 55.0 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 69/223 (30%), Gaps = 37/223 (16%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 + ++ + I G+IE + ++ + + D+S ++V L++ G Sbjct: 20 NGNKEKYNILLLDIIGEIEGHVSLPSDTKTTKYEHVLPELAVVQDDESIKGVLVLLNTVG 79 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G AG AI + + + + +S + IV T +V + V Sbjct: 80 GDVEAGLAIAEMLASISKPVVTLVLGGSHSIGVPLAVSGDVSFIVPTATMVVHPLRVSDT 139 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 V+ + + + +R + + Sbjct: 140 VLGVRQNYEYIERMQDRI--------------------IQFTSCHSKIDEDSLRSIMFNT 179 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 G + G EA K G+ID +GG + LY L Sbjct: 180 QELSKDI-----GSVLVGKEAVKCGIIDRIGGVSDALNILYDL 217 >gi|167630380|ref|YP_001680879.1| peptidase s14, clpp [Heliobacterium modesticaldum Ice1] gi|167593120|gb|ABZ84868.1| peptidase s14, clpp [Heliobacterium modesticaldum Ice1] Length = 255 Score = 55.0 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 67/198 (33%), Gaps = 25/198 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + ++ ++ + + +++ L++ GG AG AI + + + Sbjct: 79 EHILPQLVALEQSKDIEGVLLILNTVGGDVEAGLAIAEMVASL--------------SKP 124 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 I + ++ ++ + +L + V + ++ Sbjct: 125 SVSIVLGGGHSIGVPIAVSADYSMIASTATMTIHPIRLTGLVIGVPA-----TFEYLEKM 179 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + V + + F L+ ++ + D G + G EA + GLID VGG Sbjct: 180 QDRVVAFVTRNSRITPEKFKELMFKTGELTRDI------GTVVVGKEAVEYGLIDAVGGI 233 Query: 231 EEVWQSLYALGVDQSIRK 248 E + L L ++ K Sbjct: 234 SEAVKKLNELIEERRNNK 251 >gi|225181409|ref|ZP_03734853.1| peptidase S14 ClpP [Dethiobacter alkaliphilus AHT 1] gi|225167990|gb|EEG76797.1| peptidase S14 ClpP [Dethiobacter alkaliphilus AHT 1] Length = 255 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 72/212 (33%), Gaps = 37/212 (17%) Query: 41 IAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 I I GQIE + +I ++ I ++ L++ L++ GG AG AI Sbjct: 59 IPIIGQIEGHITLAPQNKTTKYEHVIPQLVAIEQNPKIEGLLIILNTVGGDVEAGLAIAE 118 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 + + KP ++ V S G I+ +++ ET+ + + L L Sbjct: 119 MVDTL--SKPTVSLVLGGGHSIGVPIAVSADYSFITETATMTVHPIR---------LSGL 167 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 + + K + V + + L Sbjct: 168 VIGVPQTYEYLDKMQDRVIKFVTKHSRVTEDKFRHLMF--------------CTDQLARD 213 Query: 209 DGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 G + G +A K GLID VGG + Q L L Sbjct: 214 IGTVMVGPDAVKDGLIDEVGGLAQAVQKLQEL 245 >gi|291557791|emb|CBL34908.1| ATP-dependent Clp protease proteolytic subunit ClpP [Eubacterium siraeum V10Sc8a] Length = 306 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 65/198 (32%), Gaps = 25/198 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + ++ + I +D S L++ L++ GG AG AI I + I S Sbjct: 65 EHIMPALVAIEQDMSIDGLLIILNTVGGDVEAGLAISELIAGMSKPTVSIVVGGGH--SI 122 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G ++ ++ ++ + V + + Sbjct: 123 GVPLAVSARKSFIVPSATMTIHPVRMNGLLL-----------------------GIPQTL 159 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + + S + ++ + LV+ G + G A GLID +GG Sbjct: 160 SYFERMQERIINFVSKNSRIKPERFRELMMKKDELVMDVGSVLDGETAVNEGLIDSLGGL 219 Query: 231 EEVWQSLYALGVDQSIRK 248 + Q LY+L Q K Sbjct: 220 SDAVQCLYSLIEQQKTDK 237 >gi|153816437|ref|ZP_01969105.1| hypothetical protein RUMTOR_02690 [Ruminococcus torques ATCC 27756] gi|317500190|ref|ZP_07958422.1| translocation-enhancing protein TepA [Lachnospiraceae bacterium 8_1_57FAA] gi|331087582|ref|ZP_08336512.1| hypothetical protein HMPREF1025_00095 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846225|gb|EDK23143.1| hypothetical protein RUMTOR_02690 [Ruminococcus torques ATCC 27756] gi|316898405|gb|EFV20444.1| translocation-enhancing protein TepA [Lachnospiraceae bacterium 8_1_57FAA] gi|330400453|gb|EGG80086.1| hypothetical protein HMPREF1025_00095 [Lachnospiraceae bacterium 3_1_46FAA] Length = 235 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 74/223 (33%), Gaps = 37/223 (16%) Query: 38 VARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + + I G+IE + L+ R+ +I DD +++ L++ GG AG A Sbjct: 32 IQLLTIIGEIEGHDSVSGNTKATKYEHLLPRLAQIEEDDETDGVLILLNTLGGDVEAGLA 91 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I I + + + +S + IV T +V + + V Sbjct: 92 IAEMIASLSKPTVSLVLGGSHSIGGPLAVSADYSFIVPTGTMIVHPVRSTGMFIGVMQSY 151 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 + + + + + Q V D Sbjct: 152 RNMEKTQDRITKFIASHSNITQDRLLELMLDSSQLVKDV--------------------- 190 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 G + G +A K G+ID VGG +E + L++L + ++ Sbjct: 191 ----GTMLEGEQAVKEGMIDEVGGIKEAFAKLHSLIDKEKEKQ 229 >gi|313114424|ref|ZP_07799950.1| Clp protease [Faecalibacterium cf. prausnitzii KLE1255] gi|310623251|gb|EFQ06680.1| Clp protease [Faecalibacterium cf. prausnitzii KLE1255] Length = 236 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 53/189 (28%), Gaps = 25/189 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ D L+V L++ GG AG A+ I V + + Sbjct: 68 EHVIPQLVAAQEDPRIEGLLVLLNTVGGDVEAGLALAELIASVSKPSATLVLGGGHSIGI 127 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +S + IV T V + V + + + Sbjct: 128 PLAVSARRSFIVPTATMTVHPVRHSGVILGVPQTMRSFEQMQQRITGFVAAHSGMTEKRY 187 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + V+D G + G A K LID +GG Sbjct: 188 TDLMLHTGELVMDM-------------------------GTVLDGRRAVKEKLIDELGGL 222 Query: 231 EEVWQSLYA 239 + LY Sbjct: 223 SDALAWLYK 231 >gi|291545120|emb|CBL18229.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ruminococcus sp. 18P13] Length = 243 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 25/201 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I + I +D S L++ L++ GG AG AI + +K + S Sbjct: 66 EHIIPALVAIEQDRSIEGLLIILNTVGGDVEAGLAIAELLAGMKTPTVSLVVGGGH--SI 123 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G ++ ++ ++ + V V S F ++ Sbjct: 124 GVPLAVSAKRSFIVPSATMTIHPVRMNGMIVGVP-----------------QTLSYFKKM 166 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + V + S F L+ E + LV+ G + G A ++GLID +GG Sbjct: 167 QDRIVNFVTANSGISEQQFRALMME------TEELVMDVGTVVDGERAVELGLIDSLGGL 220 Query: 231 EEVWQSLYALGVDQSIRKIKD 251 + LY L R D Sbjct: 221 SDAVACLYGLIEAGEERYPDD 241 >gi|167750805|ref|ZP_02422932.1| hypothetical protein EUBSIR_01787 [Eubacterium siraeum DSM 15702] gi|167656240|gb|EDS00370.1| hypothetical protein EUBSIR_01787 [Eubacterium siraeum DSM 15702] Length = 320 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 70/220 (31%), Gaps = 25/220 (11%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + ++ + I +D S L++ L++ GG AG AI I + I S Sbjct: 79 EHIMPALVAIEQDMSIDGLLIILNTVGGDVEAGLAISELIAGMSKPTVSIVVGGGH--SI 136 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G ++ ++ ++ + V + + Sbjct: 137 GVPLAVSARKSFIVPSATMTIHPVRMNGLLL-----------------------GIPQTL 173 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + + S + ++ + LV+ G + G A GLID +GG Sbjct: 174 SYFERMQERIINFVSKNSRIKPERFRELMMKKDELVMDVGSVLDGETAVNEGLIDSLGGL 233 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270 + Q LY+L Q + + K + S+ Sbjct: 234 SDAVQCLYSLIEQQKTDRESTKRTKHSTGKTVSKKRASSA 273 >gi|291545835|emb|CBL18943.1| Protease subunit of ATP-dependent Clp proteases [Ruminococcus sp. SR1/5] Length = 237 Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 71/231 (30%), Gaps = 37/231 (16%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 V + + G+IE + ++ ++ I D+ L++ L++ G Sbjct: 32 DGNSRKHKVELLTVIGEIEGHESAPSHSKTTKYEHVLPKLALIEDDEEIEGLLILLNTVG 91 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G AG AI I + + + +S + IV + T +V + Sbjct: 92 GDVEAGLAIAEMIASLSIPTVSLVLGGGHSIGVPMAVSADYSFIVPSATMVVHPVRQNGM 151 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + V + + + + + Q V D Sbjct: 152 FIGVAQSYRNMEKIQDRIIAFVSGHSHITAERMEELMLDTSQLVKDV------------- 198 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 G + G EA K GLID VGG E LY L + +K Sbjct: 199 ------------GTMLEGEEAVKEGLIDEVGGIREALDRLYTLIERKKTQK 237 >gi|212546731|ref|XP_002153519.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Penicillium marneffei ATCC 18224] gi|210065039|gb|EEA19134.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Penicillium marneffei ATCC 18224] Length = 257 Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 67/195 (34%), Gaps = 29/195 (14%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++++ S ++ ++ + D+ A+ + ++SPGGS AG AI+ + +++ Sbjct: 78 IICLNGEVDETTSAAIVAQLLFLEADNPEKAIHLYINSPGGSVTAGLAIYDTMTYIQSPV 137 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + S + Y + I V Sbjct: 138 HTICVGQAASMGSLLLCGGHAGKRYCLPHSSIMIHQPSGGYFGQASDIAIHAKEILRV-- 195 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 + R ++ + + D+ L + + G Sbjct: 196 ------------------------RTQLNQIYQRHLTGKKQLSLDEIEKLMERDYFMGAQ 231 Query: 217 EAKKVGLIDVVGGQE 231 EA ++G++D + + Sbjct: 232 EALEMGIVDEILDRR 246 >gi|56419814|ref|YP_147132.1| hypothetical protein GK1279 [Geobacillus kaustophilus HTA426] gi|56379656|dbj|BAD75564.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 246 Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 59/206 (28%), Gaps = 33/206 (16%) Query: 43 IRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I G I + +I +I I ++ L+V L++ GG AG AI + + Sbjct: 53 IEGHIQLPPQNKATKYEHVIPQIVAIEQNPKIEGLLVILNTVGGDVEAGLAIAEMLASLS 112 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + + +SC + I T + I + V + L + Sbjct: 113 KPTVSVVLGGGHSIGVPIAVSCNYSFITETATMTIHPIRLTGLVIGVPQTFEYLDKMQER 172 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 V K + D G Sbjct: 173 VVRFVTKHSKISEEKFKELMFSKGNLTRDI-------------------------GTNVV 207 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYAL 240 G +A + GLID VGG + L L Sbjct: 208 GPDAVRYGLIDEVGGVSQAMAKLREL 233 >gi|255944899|ref|XP_002563217.1| Pc20g06920 [Penicillium chrysogenum Wisconsin 54-1255] gi|211587952|emb|CAP86021.1| Pc20g06920 [Penicillium chrysogenum Wisconsin 54-1255] Length = 258 Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 66/195 (33%), Gaps = 29/195 (14%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ++D S ++ ++ + D+ + + + ++SPGGS AG AI+ + + + Sbjct: 74 IICLNGQVDDTLSASIVAQLLFLEADNPSKPIHLYINSPGGSVTAGLAIYDTMTYIASPV 133 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + S + Y + I V Sbjct: 134 STICVGQAASMGSLLLAGGEAGKRYCLPHSSIMVHQPSGGYFGQASDIAIHAKEILRV-- 191 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 + R ++ + + D+ L + + G Sbjct: 192 ------------------------RTQLNEIYQRHLTSKKKLSLDEIEKLMERDYFMGAK 227 Query: 217 EAKKVGLIDVVGGQE 231 EA ++G++D + + Sbjct: 228 EALELGVVDEILDRR 242 >gi|138894799|ref|YP_001125252.1| translocation-enhancing protein [Geobacillus thermodenitrificans NG80-2] gi|196247576|ref|ZP_03146278.1| peptidase S14 ClpP [Geobacillus sp. G11MC16] gi|134266312|gb|ABO66507.1| Translocation-enhancing protein [Geobacillus thermodenitrificans NG80-2] gi|196212360|gb|EDY07117.1| peptidase S14 ClpP [Geobacillus sp. G11MC16] Length = 245 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 57/195 (29%), Gaps = 25/195 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L+V L++ GG AG AI + + + + Sbjct: 68 EHVIPQIVAIEQNPKIEGLLVILNTVGGDVEAGLAIAEMLASLSKPTVSVVLGGGHSIGV 127 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +SC + I T + I + V + L + V K + Sbjct: 128 PIAVSCNYSFITETATMTIHPIRLTGLVIGVPQTFEYLDKMQERVVRFVTKHSNISEEKF 187 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 D G G +A + GLID VGG Sbjct: 188 KELMFSKGNLTRDI-------------------------GTNVIGPDAVQYGLIDEVGGV 222 Query: 231 EEVWQSLYALGVDQS 245 + L L + Sbjct: 223 SQAMAKLRQLIEMKK 237 >gi|300905038|ref|ZP_07122851.1| conserved domain protein [Escherichia coli MS 84-1] gi|300403056|gb|EFJ86594.1| conserved domain protein [Escherichia coli MS 84-1] Length = 170 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 44/103 (42%), Gaps = 13/103 (12%) Query: 36 PHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 +A + + G + +I R+++ + D +++ + +PGG Sbjct: 67 NGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAG 126 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 I +V++ KPV ++M SAG L++ A++ + + Sbjct: 127 AFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQ 169 >gi|257470301|ref|ZP_05634392.1| peptidase S14, ClpP [Fusobacterium ulcerans ATCC 49185] gi|317064512|ref|ZP_07928997.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium ulcerans ATCC 49185] gi|313690188|gb|EFS27023.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium ulcerans ATCC 49185] Length = 367 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 76/217 (35%), Gaps = 41/217 (18%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSS 75 ++FS + +D I I G+I + I+++ + +A + + ++S Sbjct: 5 LFFSIKNLSDDEGE----IRISGEITRWAWEEFGQTSSLIFIKQLEKIKNARKVSIKINS 60 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 PGG AI+ ++++ K + + MA SA LI+ A+ V + + Sbjct: 61 PGGDISETLAIYHELKRLSQTKEITAYIDGMACSAATLIAIAAKKTVMGKGCYFMIHNPM 120 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 Y N +Q + ++ + + L E Sbjct: 121 IYMGYS-----------------------------NTGEMQEAIEHLNKTKENMIDLYEE 151 Query: 196 SRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQE 231 ++ + + + +T EA + G ID + + Sbjct: 152 KSSLSREDIAKKMDEETYFTAQEALEAGFIDEIASYD 188 >gi|218290114|ref|ZP_03494276.1| peptidase S14 ClpP [Alicyclobacillus acidocaldarius LAA1] gi|218239823|gb|EED07012.1| peptidase S14 ClpP [Alicyclobacillus acidocaldarius LAA1] Length = 259 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 64/196 (32%), Gaps = 25/196 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ + D L++ L++ GG AG AI + + K + S Sbjct: 72 EHVIPQLVAVEESDKIDGLLIILNTVGGDVEAGLAIAELVASMSKPKVSVVLGGGH--SI 129 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G I+ A++ AE++ + + L+ L + ++ K + V Sbjct: 130 GVPIAVAADYTFIAESASMTIHPIR---------LNGLVIGVQQSFEYLEKMQDRVIRFV 180 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + G G +A K GL D VGG Sbjct: 181 VEHSRISEDMFRHLML---------NTGEMAKDI-----GTTVVGRDAVKYGLCDEVGGL 226 Query: 231 EEVWQSLYALGVDQSI 246 + + L L ++ Sbjct: 227 GQAMKKLKDLIRERKE 242 >gi|291536145|emb|CBL09257.1| Protease subunit of ATP-dependent Clp proteases [Roseburia intestinalis M50/1] Length = 217 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 70/218 (32%), Gaps = 37/218 (16%) Query: 35 SPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYA 82 ++ + I G+IE + ++ ++ + + L++ L++ GG + Sbjct: 21 KNKISLLTIIGEIEGHDCLPATTKTTKYEHVLPKLAELEDNPDTEGLLLLLNTVGGDVES 80 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 G AI I ++ + + +S + IV + T ++ + + K Sbjct: 81 GLAIAEMIASIRKPTVSLVLGGSHSIGVPLAVSTDYSFIVPSGTMVIHPVRMSGTVIGAK 140 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 P D + + + + + I Sbjct: 141 PTYDYFKQMQDRIVHFISTHSKASEKRLEELMM--------------------NTGILTK 180 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 G I G EA + GLI+ VGG + + L+ + Sbjct: 181 DL-----GTILVGKEAVEEGLINEVGGISDAFSRLHQM 213 >gi|331091074|ref|ZP_08339916.1| hypothetical protein HMPREF9477_00559 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405296|gb|EGG84832.1| hypothetical protein HMPREF9477_00559 [Lachnospiraceae bacterium 2_1_46FAA] Length = 226 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 37/224 (16%) Query: 37 HVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 ++ + I G+IE + L+ ++ + + L++ L++ GG AG Sbjct: 28 NIQLLTIIGEIEGHEAVSGNTKATKYEHLLPKLAEVEDSEEIEGLLILLNTLGGDVEAGL 87 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 AI I + + + S A + + +V S ++ Sbjct: 88 AIAEMIASLSKP----SVSLVLGGSHSIGGPLAVSADYSF---IVPSGTMVIHPVRSSGT 140 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + S +++ + + + + + E P Sbjct: 141 FIGVMQSYRNM----------------ERTQNRITKFISEHANISQERIEELMLDPTQLV 184 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + G + G EA K GLID VGG +E Q L+ L Q+ K Sbjct: 185 KDV--GTMLEGEEAVKEGLIDEVGGMKEALQKLHELIEIQAKNK 226 >gi|258511441|ref|YP_003184875.1| peptidase S14 ClpP [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478167|gb|ACV58486.1| peptidase S14 ClpP [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 259 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 63/196 (32%), Gaps = 25/196 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ + D L++ L++ GG AG AI + + K + S Sbjct: 72 EHVIPQLVAVEESDKIDGLLIILNTVGGDVEAGLAIAELVASMSKPKVSVVLGGGH--SI 129 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G I+ A++ AE++ + + L+ L + ++ K + V Sbjct: 130 GVPIAVAADYTFIAESASMTIHPIR---------LNGLVIGVQQSFEYLEKMQDRVIRFV 180 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + G G +A K GL D VGG Sbjct: 181 VEHSRISEDMFRHLML---------NTGEMAKDI-----GTTVVGRDAVKYGLCDEVGGL 226 Query: 231 EEVWQSLYALGVDQSI 246 + + L L + Sbjct: 227 GQAMKKLKDLIREHKE 242 >gi|295103105|emb|CBL00649.1| ATP-dependent Clp protease proteolytic subunit ClpP [Faecalibacterium prausnitzii SL3/3] Length = 227 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 54/189 (28%), Gaps = 25/189 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ + D L+V L++ GG G A+ I + + + Sbjct: 59 EHVIPQLVAVQEDPRIEGLLVLLNTVGGDVETGLALAELIASISKPSATLVLGGGHSIGI 118 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +S + IV T V + V + + + P Sbjct: 119 PLAVSARHSFIVPTATMTVHPVRHSGLILGVPQTMHCFEQMQQRITGFVAAHSGMPEKRY 178 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + V+D G + G A K LID +GG Sbjct: 179 TQLMLHTGELVMDM-------------------------GTVLDGRRAVKEKLIDELGGL 213 Query: 231 EEVWQSLYA 239 + LY Sbjct: 214 SDALAWLYG 222 >gi|315453779|ref|YP_004074049.1| ATP-dependent clp protease proteolytic subunit [Helicobacter felis ATCC 49179] gi|315132831|emb|CBY83459.1| ATP-dependent clp protease proteolytic subunit [Helicobacter felis ATCC 49179] Length = 197 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I D+ ++ ++ + +D + + ++SPGGS +G +I+ + + Sbjct: 29 IVLLSGEINDAVASSIVAQLLFLEAEDPEKDINLYINSPGGSVTSGFSIYDTMNYIHPDI 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A + S + L L Sbjct: 89 CTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGTQGQASNLAIYTKE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + ++++ + P DK +D + + Sbjct: 143 ------------------------ILRLKDLLNQIMATNTGQPLDKIEQDTDRDFFMSAL 178 Query: 217 EAKKVGLIDVV 227 EAK+ GL+D V Sbjct: 179 EAKEYGLVDEV 189 >gi|170754867|ref|YP_001781951.1| Clp protease [Clostridium botulinum B1 str. Okra] gi|169120079|gb|ACA43915.1| clp protease [Clostridium botulinum B1 str. Okra] Length = 230 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 74/237 (31%), Gaps = 37/237 (15%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVS 72 F ++ + + + I GQIE + LI ++ + + + Sbjct: 17 FGTTNLPPRQADRIQVLPIIGQIEGHMVLSPQTKATRYEHLIPQLIALETSKEVEGVFII 76 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 L++ GG AG AI I+ + + + S + I T +V I Sbjct: 77 LNTVGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGVPLATSADYSFISPTATMIVHPI 136 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + V + + + ++ ++ +Q + + D Sbjct: 137 RMNGLIIGVPQTFEYFNKMQERIIEFIVRTSKISKEKLKEFMLQSDELLNDM-------- 188 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 G I G +A + G+I+ VGG +E L L ++ + Sbjct: 189 -----------------GTILIGKQAVESGIINEVGGVKEALDKLNNLIDEKQKENV 228 >gi|148380363|ref|YP_001254904.1| Clp protease [Clostridium botulinum A str. ATCC 3502] gi|153932771|ref|YP_001384583.1| Clp protease [Clostridium botulinum A str. ATCC 19397] gi|153934679|ref|YP_001388099.1| Clp protease [Clostridium botulinum A str. Hall] gi|153941144|ref|YP_001391706.1| Clp protease [Clostridium botulinum F str. Langeland] gi|168180713|ref|ZP_02615377.1| clp protease [Clostridium botulinum NCTC 2916] gi|170759121|ref|YP_001787719.1| Clp protease [Clostridium botulinum A3 str. Loch Maree] gi|226949761|ref|YP_002804852.1| Clp protease family protein [Clostridium botulinum A2 str. Kyoto] gi|148289847|emb|CAL83955.1| translocation-enhancing protein TepA [Clostridium botulinum A str. ATCC 3502] gi|152928815|gb|ABS34315.1| Clp protease family protein [Clostridium botulinum A str. ATCC 19397] gi|152930593|gb|ABS36092.1| Clp protease family protein [Clostridium botulinum A str. Hall] gi|152937040|gb|ABS42538.1| clp protease [Clostridium botulinum F str. Langeland] gi|169406110|gb|ACA54521.1| Clp protease family protein [Clostridium botulinum A3 str. Loch Maree] gi|182668575|gb|EDT80554.1| clp protease [Clostridium botulinum NCTC 2916] gi|226841950|gb|ACO84616.1| Clp protease family protein [Clostridium botulinum A2 str. Kyoto] gi|295319734|gb|ADG00112.1| clp protease [Clostridium botulinum F str. 230613] gi|322806674|emb|CBZ04243.1| translocation-enhancing protein TepA [Clostridium botulinum H04402 065] Length = 230 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 74/237 (31%), Gaps = 37/237 (15%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVS 72 F ++ + + + I GQIE + LI ++ + + + Sbjct: 17 FGTTNLPPRQADRIQVLPIIGQIEGHMVLSPQTKATRYEHLIPQLIALETSKEVEGVFII 76 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 L++ GG AG AI I+ + + + S + I T +V I Sbjct: 77 LNTVGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGVPLATSADYSFISPTATMIVHPI 136 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + V + + + ++ ++ +Q + + D Sbjct: 137 RMNGLIIGVPQTFEYFNKMQERIIEFIVRTSKISKEKLKEFMLQSDELLNDM-------- 188 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 G I G +A + G+I+ VGG +E L L ++ + Sbjct: 189 -----------------GTILIGKQAVESGIINEVGGVKEALDKLNNLIDEKQKEDV 228 >gi|253573584|ref|ZP_04850927.1| peptidase S14 ClpP [Paenibacillus sp. oral taxon 786 str. D14] gi|251847112|gb|EES75117.1| peptidase S14 ClpP [Paenibacillus sp. oral taxon 786 str. D14] Length = 253 Score = 53.8 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 73/227 (32%), Gaps = 37/227 (16%) Query: 34 NSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAY 81 +V + I GQIE + +I ++ ++ L++ L++ GG Sbjct: 45 GESNVYCLTIIGQIEGHLVLPPQNKTTKYEHVIPQLVAAEQNPRIEGLLIILNTVGGDVE 104 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 AG AI I + KP +T V S G I+ AS+ + AE++ + + Sbjct: 105 AGLAIAEMIASL--SKPTVTVVIGGGHSIGVPIAVASDYSLIAESATMTIHPIRMT---- 158 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + + + S + + Sbjct: 159 ------------GLVIGVPQTFEYIEKMQERVVRFVTTHSKISEEKFKELMFKTGELNR- 205 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 G G++A K GLID +GG + L ++ + K Sbjct: 206 ------DIGTAVGGSDAVKYGLIDAIGGIGDGLAKLNSMIESKRQAK 246 >gi|121705182|ref|XP_001270854.1| Clp protease, putative [Aspergillus clavatus NRRL 1] gi|119399000|gb|EAW09428.1| Clp protease, putative [Aspergillus clavatus NRRL 1] Length = 256 Score = 53.8 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 63/195 (32%), Gaps = 29/195 (14%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++++S ++ ++ + D+ + + ++SPGGS AG AI+ + + + Sbjct: 71 IICLNGEVDESMSASIVAQLLFLEADNPQKPIHLYINSPGGSVTAGLAIYDTMTYITSPV 130 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L S + Y + I V+S Sbjct: 131 STICVGQAASMGSLLLCGGHPGKRYCLPHSSIMIHQPSGGYFGQASDIAIHAKEILRVRS 190 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA- 216 K + ++ L + + GA Sbjct: 191 QLNKIYKRHLTGNKEL--------------------------SLEEIEKLMERDYFMGAN 224 Query: 217 EAKKVGLIDVVGGQE 231 EA ++G++D + + Sbjct: 225 EALEMGIVDEILDRR 239 >gi|242822497|ref|XP_002487898.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Talaromyces stipitatus ATCC 10500] gi|218712819|gb|EED12244.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Talaromyces stipitatus ATCC 10500] Length = 262 Score = 53.8 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 63/195 (32%), Gaps = 29/195 (14%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++++ S ++ ++ + D + + ++SPGGS AG AI+ + +++ Sbjct: 79 IICLNGEVDETTSASIVAQLLFLEADSPEKPIHLYINSPGGSVTAGLAIYDTMTYIQSPV 138 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + S + Y + I V++ Sbjct: 139 NTICVGQAASMGSLLLCGGHAGKRYCLPHSSIMIHQPSGGYFGQASDIAIHAKEILRVRT 198 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 K + D+ L + + G Sbjct: 199 QLNKIYQRHLTGKKQL--------------------------SLDEIEKLMERDYFMGAQ 232 Query: 217 EAKKVGLIDVVGGQE 231 EA ++G++D + + Sbjct: 233 EALEMGIVDEILDRR 247 >gi|134299785|ref|YP_001113281.1| peptidase S14, ClpP [Desulfotomaculum reducens MI-1] gi|134052485|gb|ABO50456.1| ATP-dependent Clp protease proteolytic subunit ClpP [Desulfotomaculum reducens MI-1] Length = 276 Score = 53.8 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 73/214 (34%), Gaps = 33/214 (15%) Query: 43 IRGQIE--------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I G I + +I ++ I +DD+ +++ L++ GG AG AI + Sbjct: 83 IEGHIMLPAQNKTTKYEHIIPQLVGIEQDDNVEGVLLVLNTVGGDVEAGLAIAEVVA--T 140 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 KP +T V S G I+ +S A T+ + + L+ L + + Sbjct: 141 MTKPTVTLVLGGGHSIGVPIAVSSKYSYIAPTASMTIHPIR---------LNGLVIGVPQ 191 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 K + V + + + G + Sbjct: 192 TYDYLDKMQDRVIRFVTEHSRVTEEKFRQLMFKTGELAR--------------DIGTVVI 237 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 G +A + GLID VGG + L L +Q ++ Sbjct: 238 GKDAVETGLIDAVGGVGQAMCKLKELIEEQKGKE 271 >gi|168184614|ref|ZP_02619278.1| Clp protease [Clostridium botulinum Bf] gi|182672304|gb|EDT84265.1| Clp protease [Clostridium botulinum Bf] Length = 226 Score = 53.8 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 37/235 (15%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVS 72 F ++ + + + I GQIE + LI ++ + + + Sbjct: 17 FGTTNLPPRQADRIQVLPIIGQIEGHMVLSPQTKATRYEHLIPQLIALETSKDVEGVFII 76 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 L++ GG AG AI I+ + + + S + I T +V I Sbjct: 77 LNTVGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGVPLATSADYSFISPTATMIVHPI 136 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + V + + + ++ ++ +Q + + D Sbjct: 137 RMNGLIIGVPQTFEYFNKMQERIIEFIVRTSKISKEKLKEFMLQSDELLNDM-------- 188 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 G I G +A + G+I+ VGG +E L L ++ Sbjct: 189 -----------------GTILIGKQAVESGIINEVGGVKEALDKLNNLIDEKQKP 226 >gi|160945600|ref|ZP_02092826.1| hypothetical protein FAEPRAM212_03129 [Faecalibacterium prausnitzii M21/2] gi|158443331|gb|EDP20336.1| hypothetical protein FAEPRAM212_03129 [Faecalibacterium prausnitzii M21/2] Length = 227 Score = 53.8 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 55/189 (29%), Gaps = 25/189 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ + D L+V L++ GG AG A+ I + + + Sbjct: 59 EHVIPQLVAVQEDPRIEGLLVLLNTVGGDVEAGLALAELIASISKPSATLVLGGGHSIGI 118 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +S + IV T V + V + + + P Sbjct: 119 PLAVSARHSFIVPTATMTVHPVRHSGLILGVPQTMHCFEQMQQRITGFVAAHSGMPEKRY 178 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + V+D G + G A K LID +GG Sbjct: 179 TQLMLHTGELVMDM-------------------------GTVLDGRRAVKEKLIDELGGL 213 Query: 231 EEVWQSLYA 239 + LY Sbjct: 214 SDALAWLYG 222 >gi|317492300|ref|ZP_07950729.1| protease IV [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919639|gb|EFV40969.1| protease IV [Enterobacteriaceae bacterium 9_2_54FAA] Length = 167 Score = 53.8 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 58/163 (35%), Gaps = 28/163 (17%) Query: 10 TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ------------------ 51 +++L ++ +YF S + + + G + D+ Sbjct: 2 NVFLILLILVCVGIYFQMQSKPVEPVKGALLVNLTGVVVDNPAISNKFSQLGREILGANS 61 Query: 52 ---------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVIT 101 ++++ I + D + T +++SL+ G+ + I +A+++ ++ I Sbjct: 62 NRLQENSLFDVVDMIRQAKTDPNITGMVLSLNDFAGADQPSLQYIGKALREFRDSGKPIF 121 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + A Y ++ +N I + + +G L K Sbjct: 122 ATADSYNQAQYYLASYANKIYLSPQAWSICMGWLLITSITKHC 164 >gi|237795844|ref|YP_002863396.1| Clp protease family protein [Clostridium botulinum Ba4 str. 657] gi|229262404|gb|ACQ53437.1| Clp protease family protein [Clostridium botulinum Ba4 str. 657] Length = 226 Score = 53.5 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 37/235 (15%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVS 72 F ++ + + + I GQIE + LI ++ + + + Sbjct: 17 FGTTNLPPRQADRIQVLPIIGQIEGHMVLSPQTKATRYEHLIPQLIALETSKDVEGVFII 76 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 L++ GG AG AI I+ + + + S + I T +V I Sbjct: 77 LNTVGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGVPLATSADYSFISPTATMIVHPI 136 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + V + + + ++ ++ +Q + + D Sbjct: 137 RMNGLIIGVPQTFEYFNKMQERIIEFIVRTSKISKEKLKEFMLQSDELLNDM-------- 188 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 G I G +A + G+I+ VGG +E L L ++ Sbjct: 189 -----------------GTILIGKQAVESGIINEVGGVKEALNKLNNLIDEKQKP 226 >gi|226326248|ref|ZP_03801766.1| hypothetical protein PROPEN_00090 [Proteus penneri ATCC 35198] gi|225205326|gb|EEG87680.1| hypothetical protein PROPEN_00090 [Proteus penneri ATCC 35198] Length = 166 Score = 53.5 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 42/135 (31%), Gaps = 29/135 (21%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-------- 51 + F+ K I + L + + + S + + + ++G I D Sbjct: 19 INFIRKLILNVIFFFLLFMVIGIFLISKEAQKPMDYEGALLVDLKGVIVDQTATQNPLGE 78 Query: 52 -------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQ 91 E+++ + R ++D +++ L G+ I +A+ Sbjct: 79 VGRELLGVSSSQLQENSLFEVVDTLRRATQDPKIKGMVLKLDEFAGADQPSLNYIGKALN 138 Query: 92 KVKNRKPVITEVHEM 106 + K + + Sbjct: 139 EFKKDRQTDFCSKWL 153 >gi|39977745|ref|XP_370260.1| hypothetical protein MGG_06757 [Magnaporthe oryzae 70-15] gi|145013724|gb|EDJ98365.1| hypothetical protein MGG_06757 [Magnaporthe oryzae 70-15] Length = 274 Score = 53.5 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 63/206 (30%), Gaps = 27/206 (13%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G I+D + ++ + +D + + ++SPGG +G AI+ + + + Sbjct: 74 IVCLNGPIDDWTQASVTAQLLWLEQDSPHKPITLYINSPGGQVSSGLAIYDTMNYISSPV 133 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L+ A+ A S + L + I ++ Sbjct: 134 HTVCVGMAASMGAILLLGGAAGQRYALPHSQIMVHQPLGSTQGQASDIIIYAKQITRIR- 192 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216 ++ + + + + + + T Sbjct: 193 ----------------------SQINDIMRRHLNTAAGRERFAAQEVDEMMERDKYLTAD 230 Query: 217 EAKKVGLIDVVGGQE-EVWQSLYALG 241 EA ++G++D + + S Sbjct: 231 EAVELGIVDKILTSRSDAVASALNDA 256 >gi|153812753|ref|ZP_01965421.1| hypothetical protein RUMOBE_03160 [Ruminococcus obeum ATCC 29174] gi|149831113|gb|EDM86202.1| hypothetical protein RUMOBE_03160 [Ruminococcus obeum ATCC 29174] Length = 243 Score = 53.5 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 64/197 (32%), Gaps = 25/197 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + ++ ++ I D++ L++ L++ GG AG AI I + + + Sbjct: 71 EHVLPKLAMIEDDENVEGLLILLNTVGGDVEAGLAIAEMIASLSIPTVSLVLGGGHSIGV 130 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +S + V + T ++ + + V + + + + Sbjct: 131 PMAVSADYSFAVPSATMVIHPVRSSGMFIGVAQTYRNMEKIQDRITGFIAAHSRASQERL 190 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + Q V D G + G EA K GLID +GG Sbjct: 191 EELMLDTSQLVKDV-------------------------GTLLEGEEAVKEGLIDEIGGI 225 Query: 231 EEVWQSLYALGVDQSIR 247 E L+ + ++ + Sbjct: 226 REALAKLHEMIDAKNNK 242 >gi|115384910|ref|XP_001209002.1| ATP-dependent Clp protease proteolytic subunit [Aspergillus terreus NIH2624] gi|114196694|gb|EAU38394.1| ATP-dependent Clp protease proteolytic subunit [Aspergillus terreus NIH2624] Length = 258 Score = 53.5 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 61/195 (31%), Gaps = 29/195 (14%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++++ S ++ ++ + D+ + + ++SPGGS AG AI+ + + + Sbjct: 73 IICLNGEVDETMSASIVAQLLFLEADNPQKPIHLYINSPGGSVTAGLAIYDTMTYIASPV 132 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L S + Y + I V+ Sbjct: 133 STICVGQAASMGSLLLCGGHPGKRYCLPHSSIMMHQPSGGYFGQASDIAIHAKEILRVRE 192 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 K + + ++ L + + G Sbjct: 193 QLNKIYKRHLTGKKE--------------------------MSLEEIEKLMERDYFMGAK 226 Query: 217 EAKKVGLIDVVGGQE 231 EA +G++D V + Sbjct: 227 EALDMGIVDEVLDRR 241 >gi|313123951|ref|YP_004034210.1| ATP-dependent clp protease proteolytic subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280514|gb|ADQ61233.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 244 Score = 53.5 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 71/200 (35%), Gaps = 49/200 (24%) Query: 41 IAIRGQIEDS------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 I I G+I S ++L+++I + + ++SPGG + G AI+ Sbjct: 19 IDIEGEITSSVYNETQTSASQFRDLLKQI------GDVKTINLHINSPGGDVFEGVAIYN 72 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 ++ +++ + + +AAS +I+ A N I+ E S++ Sbjct: 73 MLK--QSKADINVYIDGLAASIASVIAMAGNTIIMPENSMLMIHN--------------- 115 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 ++ K +++ + + L + + D L Sbjct: 116 ---PWTIAQGNSKELRKIADDMDKMSESIKTSY----------LSKSNDKLDLDTLNQLM 162 Query: 209 DGRIW-TGAEAKKVGLIDVV 227 D W T EA + GL D V Sbjct: 163 DEETWLTAKEATEYGLADEV 182 >gi|187778999|ref|ZP_02995472.1| hypothetical protein CLOSPO_02594 [Clostridium sporogenes ATCC 15579] gi|187772624|gb|EDU36426.1| hypothetical protein CLOSPO_02594 [Clostridium sporogenes ATCC 15579] Length = 231 Score = 53.5 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 37/235 (15%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVS 72 F ++ + + + I GQIE + LI ++ + + + Sbjct: 22 FGTTNLPPRQADRIQVLPIIGQIEGHMVLSPQTKATRYEHLIPQLIALETSKEVEGVFII 81 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 L++ GG AG AI I+ + + + S + I T +V I Sbjct: 82 LNTVGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGVPLATSADYSFISPTATMIVHPI 141 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + V + + + ++ ++ +Q + + D Sbjct: 142 RMNGLIIGVPQTFEYFNKMQERIIEFIVRTSKISKEKLKEFMLQSDELLNDM-------- 193 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 G I G +A + G+I+ VGG +E L L ++ Sbjct: 194 -----------------GTILIGKQAVESGIINEVGGVKEALDKLNNLIDEKQKP 231 >gi|218262799|ref|ZP_03477157.1| hypothetical protein PRABACTJOHN_02837 [Parabacteroides johnsonii DSM 18315] gi|218223131|gb|EEC95781.1| hypothetical protein PRABACTJOHN_02837 [Parabacteroides johnsonii DSM 18315] Length = 460 Score = 53.5 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 95/256 (37%), Gaps = 19/256 (7%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD-SATALIV 71 + L L + V + S + P V +I I+ +I ++ L R + A A+++ Sbjct: 5 LGLFLAIILVQIAPFISAADTLHPLVYKIDIKKEISNTTRLYLRGGLAEANALGADAVLI 64 Query: 72 SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 +++ GG A +++ AI + N PV + AASAG LIS A I + + +G+ Sbjct: 65 HMNTYGGQVDAADSMRTAI--LYNSIPVYVFIDNNAASAGALISIACKKIYMRKGANIGA 122 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 V+ Q P +S S M++ + Sbjct: 123 ATVVNQTGAAMP------DKYQSYMRSMMRSTAEAHGQDTIIQKNDTLYKWKRDPLIAEA 176 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIK 250 +V E IP + +T EA+K G D + +EV +++ Sbjct: 177 MVDERVAIP--NLIDTGKVLTFTAQEAQKWGYCDGIAENPDEVITQYLG----YKDYEMR 230 Query: 251 DWNPPKNYWFCDLKNL 266 + P W DLK Sbjct: 231 SYTP---SWQDDLKGF 243 >gi|167769170|ref|ZP_02441223.1| hypothetical protein ANACOL_00493 [Anaerotruncus colihominis DSM 17241] gi|167668810|gb|EDS12940.1| hypothetical protein ANACOL_00493 [Anaerotruncus colihominis DSM 17241] Length = 240 Score = 53.5 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ + +D L+V L++ GG AG AI + RKP ++ V S Sbjct: 70 EHVIPQLLAVEQDPEIEGLVVILNTVGGDVEAGLAIAELLS--GMRKPTVSLVLGGGHSI 127 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G ++ ++ ++ + V + S F + Sbjct: 128 GVPLAVSARRSFIVPSATMTVHPVRMNGLVLGVP-----------------QTLSYFDRM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + V+ + D S F +L+ LV+ G + G A GLID +GG Sbjct: 171 QERIVKFVTDNSRISPERFRQLMMN------KDELVMDVGTVLDGQAAVDEGLIDSLGGV 224 Query: 231 EEVWQSLYAL 240 +V +LY + Sbjct: 225 SDVIAALYEM 234 >gi|163119655|ref|YP_080707.2| ATP-dependent protease proteolytic subunit [Bacillus licheniformis ATCC 14580] gi|145903165|gb|AAU25069.2| ATP-dependent protease proteolytic subunit (class III heat-shock protein) [Bacillus licheniformis ATCC 14580] Length = 230 Score = 53.5 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 62/207 (29%), Gaps = 36/207 (17%) Query: 35 SPHVARIAIRGQIEDSQELIERIERISRDD-----SATALIVSLSSPGGSAYAGEAIFRA 89 + A I + G I E + + + +++ + ++SPGG + G+AI Sbjct: 5 NDSTAEITLYGSITGEGWFSESSSKAFQAELKSLGDVSSIDLYINSPGGDVFEGQAIHSM 64 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +Q+ K + V +A S +I+ A + I +++ K Sbjct: 65 LQRHKAKIN--VYVDALAGSIASVIAMAGDKITMPSNAMMMIHNPYMGMVGNAAEFRKAA 122 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + + L + L D Sbjct: 123 DDLDKITE----------------------------SIVSTYLAKAGDKLDDGTLRQLLD 154 Query: 210 GRIW-TGAEAKKVGLIDVVGGQEEVWQ 235 W T EA GLID V ++V Sbjct: 155 EETWLTADEALNYGLIDEVSESKDVAA 181 >gi|210612604|ref|ZP_03289395.1| hypothetical protein CLONEX_01597 [Clostridium nexile DSM 1787] gi|210151529|gb|EEA82536.1| hypothetical protein CLONEX_01597 [Clostridium nexile DSM 1787] Length = 236 Score = 53.5 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 75/234 (32%), Gaps = 37/234 (15%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73 S + ++ + I G+IE + L+ ++ + ++ L++ L Sbjct: 20 SIELTHNNRKHNIQLLTIIGEIEGHEAVSGNTKATKYEHLLPKLAEVEDNEEIEGLLILL 79 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 ++ GG AG AI I + + + +S + IV + T ++ + Sbjct: 80 NTLGGDVEAGLAIAEMIASLSKPTVSLVLGGSHSIGGPLAVSADYSFIVPSGTMIIHPVR 139 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + V + + + + + Q V D Sbjct: 140 SNGMFIGVIQSYRNMERTQDRIIRFLAGHSHMTQERIEELMLDSTQLVKDV--------- 190 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 G + G EA K GLID VGG + L+ + ++I+ Sbjct: 191 ----------------GTLLEGEEAVKEGLIDAVGGMSDALTKLHEMIEKKTIK 228 >gi|73540556|ref|YP_295076.1| hypothetical protein Reut_A0853 [Ralstonia eutropha JMP134] gi|72117969|gb|AAZ60232.1| Protein of unknown function DUF107 [Ralstonia eutropha JMP134] Length = 472 Score = 53.5 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 42/311 (13%), Positives = 96/311 (30%), Gaps = 37/311 (11%) Query: 1 MEFVLKKIK--TRYVMLSLVTLTVVYFSWSSHVEDNSPHVA------RIAIRGQI--EDS 50 M F + ++ YV L L + + + VA I ++G I + Sbjct: 1 MRFAIARLAHPWLYVGLLLAGFALAVLGAAPTASVPAGTVAGTAPVYVIPLKGAIGPASA 60 Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 ++ +ER A +++ + +PGG + I +AI A++ Sbjct: 61 SFVLRGMERARE-GGAQLVVLEMDTPGGLDLSMREIIQAILASPVPIASYVFPGGARAAS 119 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 ++ I A + + I + SP SE Sbjct: 120 AGTYILYASHIAA------------MAPGTNLGAASPVQIGIGGPQKPEAAPASSPASEP 167 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG- 229 + + + D+S + RN + + + + + EA ++D+V Sbjct: 168 AAQDTMTRKQMHDASAYIRGLAQLRGRNAHWAE-RAVREAVSLSATEAATQRVVDMVATD 226 Query: 230 QEEVWQSL---------YALGVDQSIRKIKDWNP-PKNYWFCDLKNLSISSLL--EDTIP 277 ++ + + + + P ++ + + S++ LL Sbjct: 227 LPDLLRKVNGKRITAAGVERVLQTDRATVVTLEPDWRSRFLAVITEPSVALLLMMIGIYG 286 Query: 278 LMKQTKVQGLW 288 L+ + G+ Sbjct: 287 LIFEFSTPGMV 297 >gi|308068716|ref|YP_003870321.1| translocation-enhancing protein tepA [Paenibacillus polymyxa E681] gi|305857995|gb|ADM69783.1| Translocation-enhancing protein tepA [Paenibacillus polymyxa E681] Length = 282 Score = 53.1 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 52/187 (27%), Gaps = 25/187 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ ++ L++ L++ GG AG AI I + I Sbjct: 74 EHIIPQLVAAEQNPRIEGLMILLNTVGGDVEAGLAIAEMIASMSKPTVTIVIGG----GH 129 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + A + Y + + + + + Sbjct: 130 SIGVPIAVSSTY--------------SYIAESATMTIHPIRMNGLVIGVPQTFEYMEKMQ 175 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 ++ + + + G GA+A K GL+D VGG Sbjct: 176 ERVVRFVVSHSRITEKQFKELMFKTGELNR-------DIGTAVGGADAVKYGLMDAVGGI 228 Query: 231 EEVWQSL 237 E + L Sbjct: 229 GEALKQL 235 >gi|315648078|ref|ZP_07901179.1| peptidase S14 ClpP [Paenibacillus vortex V453] gi|315276724|gb|EFU40067.1| peptidase S14 ClpP [Paenibacillus vortex V453] Length = 258 Score = 53.1 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 25/187 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ ++ L++ L++ GG AG AI I + KP +T V S Sbjct: 80 EHMIPQLVAAEQNPRIEGLLIILNTVGGDVEAGLAIAEMIASL--SKPTVTVVIGGGHSI 137 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G I+ A++ + AE++ + + + + Sbjct: 138 GVPIAVAADHSIIAESATMTIHPIRMS----------------GLVIGVPQTFEYMEKMQ 181 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + + + + G +G +A K GL+D VGG Sbjct: 182 ERVVRFVTSHSGITEERFKNLMFATGELNR-------DIGTAVSGVDAVKYGLMDEVGGI 234 Query: 231 EEVWQSL 237 + L Sbjct: 235 GQALSRL 241 >gi|52787302|ref|YP_093131.1| hypothetical protein BLi03615 [Bacillus licheniformis ATCC 14580] gi|52349804|gb|AAU42438.1| ClpP [Bacillus licheniformis ATCC 14580] Length = 243 Score = 53.1 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 62/207 (29%), Gaps = 36/207 (17%) Query: 35 SPHVARIAIRGQIEDSQELIERIERISRDD-----SATALIVSLSSPGGSAYAGEAIFRA 89 + A I + G I E + + + +++ + ++SPGG + G+AI Sbjct: 18 NDSTAEITLYGSITGEGWFSESSSKAFQAELKSLGDVSSIDLYINSPGGDVFEGQAIHSM 77 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 +Q+ K + V +A S +I+ A + I +++ K Sbjct: 78 LQRHKAKIN--VYVDALAGSIASVIAMAGDKITMPSNAMMMIHNPYMGMVGNAAEFRKAA 135 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + + L + L D Sbjct: 136 DDLDKITE----------------------------SIVSTYLAKAGDKLDDGTLRQLLD 167 Query: 210 GRIW-TGAEAKKVGLIDVVGGQEEVWQ 235 W T EA GLID V ++V Sbjct: 168 EETWLTADEALNYGLIDEVSESKDVAA 194 >gi|297530546|ref|YP_003671821.1| peptidase S14 ClpP [Geobacillus sp. C56-T3] gi|297253798|gb|ADI27244.1| peptidase S14 ClpP [Geobacillus sp. C56-T3] Length = 246 Score = 53.1 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 59/206 (28%), Gaps = 33/206 (16%) Query: 43 IRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I G I + +I +I I ++ L+V L++ GG AG AI + + Sbjct: 53 IEGHIQLPPQNKATKYEHVIPQIVAIEQNPKIEGLLVILNTVGGDVEAGLAIAEMLASLS 112 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + + +SC + I T + I + V + L + Sbjct: 113 KPTVSVVLGGGHSIGVPIAVSCNYSFITETATMTIHPIRLTGLVIGVPQTFEYLDKMQER 172 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 V K + D G Sbjct: 173 VVRFVTKHSKISEEKFKELMFSKGNLTRDI-------------------------GTNVV 207 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYAL 240 G +A + GLID VGG + L L Sbjct: 208 GPDAVRYGLIDEVGGVSQAMAKLRGL 233 >gi|210076021|ref|XP_505327.2| YALI0F12353p [Yarrowia lipolytica] gi|199424953|emb|CAG78134.2| YALI0F12353p [Yarrowia lipolytica] Length = 263 Score = 53.1 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 25/203 (12%), Positives = 69/203 (33%), Gaps = 15/203 (7%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G I+DS ++ ++ + + + + ++SPGG+ AG AI + +++ Sbjct: 55 IVHVAGPIDDSMATSVVAQLLYLEHKSAQKPIHMYINSPGGAVTAGFAILDTMNYIRSPV 114 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + ++ L A + S + + L ++ ++ +++ Sbjct: 115 HTVCLGQAASMASLLLTCGAPGNRIMTPNSTIMTHEPLGGIVGSSKLVELHTFHLQRIRT 174 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV---SESRNIPYDKTLV-------- 206 ++ ++ L+ S R+ Sbjct: 175 RIIQLYYDSMKLGLEGRLKEEGAEETHEAAEPTPLMSLLSSDRSWIDTINQKTLTHSLVD 234 Query: 207 --LSDGRIWTGAEAKKVGLIDVV 227 + + + EA K+GL+D + Sbjct: 235 TLIGLDQFFNADEALKLGLVDRI 257 >gi|260893129|ref|YP_003239226.1| peptidase S14 ClpP [Ammonifex degensii KC4] gi|260865270|gb|ACX52376.1| peptidase S14 ClpP [Ammonifex degensii KC4] Length = 234 Score = 53.1 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 65/190 (34%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + ++ ++ + + ++V L++ GG AG AI + + KP ++ V S Sbjct: 57 EHVLPQLVALEQHPEIEGILVILNTVGGDVEAGLAIAEMLASL--SKPTVSLVLGGGHSI 114 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G I+ A+ ET+ + + ++ + + + Sbjct: 115 GVPIAVAARYSFITETA--------------SMTIHPIRLTGQVIGV-----PQTWEYLE 155 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + V S + R+ + G + G EA GLID VGG Sbjct: 156 KMQDRVIKFVVRHSRIEEWRFRELMFRSGELARD----IGTVLVGREAVDCGLIDEVGGV 211 Query: 231 EEVWQSLYAL 240 + L L Sbjct: 212 RKALAKLREL 221 >gi|226313002|ref|YP_002772896.1| translocation-enhancing protein [Brevibacillus brevis NBRC 100599] gi|226095950|dbj|BAH44392.1| translocation-enhancing protein [Brevibacillus brevis NBRC 100599] Length = 274 Score = 53.1 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 25/198 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + LI ++ +++ ++V L++ GG AG AI + + Sbjct: 98 EHLIPQLVAAEQNNKIEGVLVILNTVGGDVEAGLAIAEMVASLSKPV------------- 144 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ GS + + + +L + V + + V Sbjct: 145 -VTLVLGGGHSIGVPIAVAGSYSFIAETATMTIHPIRLTGLVIGVPQTFEYLDKMQDRVV 203 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + A R + G G +A K GLID VGG Sbjct: 204 SFIARHS------KVSEEKFRELMTRTGELTRDI-----GTNVIGVDAVKYGLIDEVGGL 252 Query: 231 EEVWQSLYALGVDQSIRK 248 + L L Q + Sbjct: 253 GSALKKLNELIKAQKGEE 270 >gi|255595220|ref|XP_002536256.1| conserved hypothetical protein [Ricinus communis] gi|223520293|gb|EEF26129.1| conserved hypothetical protein [Ricinus communis] Length = 101 Score = 53.1 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 9/102 (8%) Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 +V E R + G WTG+ ++GLID +G ++ Q L D+ + Sbjct: 1 MVLERRTGKLSADETVFSGLFWTGSRGLELGLIDGLG---DMRQELRKRFGDKVKPMLI- 56 Query: 252 WNPPKNYWFCDLKNLSISSL--LEDTI--PLMKQTKVQGLWA 289 P++ + +S+ S+ L + L + + + LW+ Sbjct: 57 -TTPRSLFGRKAPGISLGSMDGLGAGLASGLAEAAEERALWS 97 >gi|296330894|ref|ZP_06873369.1| protein export-enhancing factor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674412|ref|YP_003866084.1| protein export-enhancing factor [Bacillus subtilis subsp. spizizenii str. W23] gi|296151899|gb|EFG92773.1| protein export-enhancing factor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412656|gb|ADM37775.1| protein export-enhancing factor [Bacillus subtilis subsp. spizizenii str. W23] Length = 245 Score = 53.1 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 67/198 (33%), Gaps = 25/198 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + I + Sbjct: 68 EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 127 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +SC + I T + + + V + L ++ Sbjct: 128 PIAVSCDYSYIAETATMTIHPVRLTGLVIGVPQTFEYLD-------------------KM 168 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + V+ + + + F L+ N+ D G G +A + GLID VGG Sbjct: 169 QERVVKFVTSHSNVNEDKFKELMFSKGNLTRDI------GTNVVGKDAVEYGLIDHVGGV 222 Query: 231 EEVWQSLYALGVDQSIRK 248 + L L + + Sbjct: 223 GQAINKLNELIEEARAEE 240 >gi|269215646|ref|ZP_06159500.1| Clp protease [Slackia exigua ATCC 700122] gi|269131133|gb|EEZ62208.1| Clp protease [Slackia exigua ATCC 700122] Length = 255 Score = 53.1 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 62/197 (31%), Gaps = 31/197 (15%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + I+D ++ ++ + D + + ++SPGGS AG AI+ A+Q ++ Sbjct: 82 IVFLGDAIDDGVANIVVAQLLHLESSDPEKDISLYINSPGGSVSAGLAIYDAMQFIRCDV 141 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + ++ + A S + + D ++ + Sbjct: 142 STVCLGMAASMASVLTAAGAPGKRFVTPNSQIMIHQPMGGSGERTQQTDFDILANE---- 197 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + L++ ++ S+ W T Sbjct: 198 ------------------------MRKTRDRLEGLLATHTGKTVEQIHADSERDHWLTAE 233 Query: 217 EAKKVGLIDVVGGQEEV 233 EAK GL+D + Sbjct: 234 EAKAYGLVDDIITSRAA 250 >gi|188585819|ref|YP_001917364.1| protein of unknown function DUF107 [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350506|gb|ACB84776.1| protein of unknown function DUF107 [Natranaerobius thermophilus JW/NM-WN-LF] Length = 458 Score = 53.1 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 37/276 (13%), Positives = 88/276 (31%), Gaps = 36/276 (13%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSH------VEDNSPHVARIAIRGQIE-DSQELIER 56 V K + ++ + F + V ++ + G IE + R Sbjct: 2 VRKNFNIFCSFICVLLIFSGLFIHFEEVQAQSLADTGEKTVYQVPVEGNIERGLSAFLNR 61 Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116 +++++A +++ +++PGG+ A I I V PV V+ A SAG ++ Sbjct: 62 AFESAQEENADLIVLDINTPGGALDASFEIKDLI--VNEEIPVYAFVNSQAISAGSYLAL 119 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 AS+ I T +G+ + ++ + Sbjct: 120 ASDEIYMRPTGTMGAAEARMGTEVADEKV------------------------MSVWETE 155 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 M + + R + + + + + EAK+ G+ + + + Sbjct: 156 MRTVAKERDRDPDIAAAMVRREMEIEGLVSENQLLTLSAEEAKEHGMAEGIVNNYD---E 212 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 L + ++ + +++S+L Sbjct: 213 LLEKTGYEGANIVEYPMEWAERMARFFTSPAVASIL 248 >gi|167948598|ref|ZP_02535672.1| signal peptide peptidase SppA, 36K type [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 144 Score = 53.1 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 30 HVEDNSPHVARIAIRGQIE-----DSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 + + H A + + G I + +++ + D + +I+ L++PGGS Sbjct: 46 KMAGSEKHTALVEVNGIIAPDTKASADKVVTGLRNAFEDKNTKGVILRLNTPGGSPVQSR 105 Query: 85 A 85 Sbjct: 106 L 106 >gi|298487182|ref|ZP_07005231.1| Peptidase, U7 family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158206|gb|EFH99277.1| Peptidase, U7 family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 182 Score = 53.1 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 45/142 (31%), Gaps = 7/142 (4%) Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 + + + + + K + F E K + Q +D ++ F V+ R P Sbjct: 48 RHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQQDLDITHDLFKNFVASYR--PQLSIDE 105 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 ++ G IW G A L+D + +E + + + + Sbjct: 106 VATGEIWLGMAAVDKLLVDELKTSDEYLAERAKDADVFHLHYV-----QRKSLQERMGMA 160 Query: 267 SISSLLEDTIPLMKQTKVQGLW 288 + +S + + Q W Sbjct: 161 AATSADQLAAKWWGRLTQQRFW 182 >gi|291522433|emb|CBK80726.1| Protease subunit of ATP-dependent Clp proteases [Coprococcus catus GD/7] Length = 233 Score = 53.1 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 65/223 (29%), Gaps = 37/223 (16%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 + ++I G++E + ++ ++ ++V L++ G Sbjct: 27 KANAGKHRIFLLSIIGEVEGHEQSPGNVKTTKYEHVLPQLAMAEDSCDIDGILVLLNTMG 86 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G AG AI I + + + +S + IV + T ++ + + Sbjct: 87 GDVEAGLAIAEMIASISKPTVSLVLGGSHSIGVPLAVSADYSFIVPSGTMIIHPVRMNGM 146 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 V + + + + + S + + + D Sbjct: 147 VIGVIQTYEYFERIQERILNFIVTNSRIAKSHLKKLMLDTSKLAKDV------------- 193 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 G + G E GLID +GG + L + Sbjct: 194 ------------GTVLDGQETVDCGLIDAIGGISDALAKLNEM 224 >gi|332799236|ref|YP_004460735.1| peptidase S14 ClpP [Tepidanaerobacter sp. Re1] gi|332696971|gb|AEE91428.1| peptidase S14 ClpP [Tepidanaerobacter sp. Re1] Length = 240 Score = 52.7 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 45/201 (22%), Positives = 73/201 (36%), Gaps = 35/201 (17%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ I ++ L+V L++ GG AG AI I V KP ++ V S Sbjct: 70 EHIIPQLIAIEQNPKIKGLLVILNTVGGDVEAGLAIAEMI--VGMTKPTVSLVLGGGHSI 127 Query: 111 GYLISCASNIIVAAETSLVGSIGVL-----FQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 G I+ AS+ AET+ + + P +LDK+ + K Sbjct: 128 GVPIAVASDYSFIAETATMTIHPIRLTGLVIGVPQTYEYLDKMQDRVIKFIVEHSKIGEE 187 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 F E+ +R+I G + G++A K GLID Sbjct: 188 SFREL------------------MFSTGKLARDI----------GTVLVGSDAVKCGLID 219 Query: 226 VVGGQEEVWQSLYALGVDQSI 246 VGG + L + + Sbjct: 220 EVGGIGAAIKKLEEIIKLVNN 240 >gi|254298353|ref|ZP_04965805.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia pseudomallei 406e] gi|157808321|gb|EDO85491.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia pseudomallei 406e] Length = 366 Score = 52.7 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 80/218 (36%), Gaps = 43/218 (19%) Query: 30 HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + VA I I I D+Q + +++ ++ D A+++ V+++S GG + A Sbjct: 13 QAQAGGGKVAEIRIYSDIGFWGTDAQNFVSQLDVVAAD--ASSITVAINSMGGDVFDAFA 70 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+ A+++ + V +AASA L+ A + I E +L+ Sbjct: 71 IYNALRRHAGKVK--GRVDGIAASAASLVLMACDEIEMPENALLMIHH------------ 116 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 +V + K ++ ++ + ++ + D Sbjct: 117 ------PHTVAAGESKDLRRVAELLD------------NASAGILAAYAQRSGLSEDDVR 158 Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + D W T A+AK+ G DV+ E L A Sbjct: 159 AMMDAETWLTAAQAKEKGFCDVI----EAPVKLAASAG 192 >gi|225018528|ref|ZP_03707720.1| hypothetical protein CLOSTMETH_02475 [Clostridium methylpentosum DSM 5476] gi|224948729|gb|EEG29938.1| hypothetical protein CLOSTMETH_02475 [Clostridium methylpentosum DSM 5476] Length = 262 Score = 52.7 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 67/198 (33%), Gaps = 25/198 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I + I + L+V L++ GG AG AI I + KP ++ V S Sbjct: 75 EHVIPALVAIEQSPDIKGLVVILNTVGGDVEAGLAIAELIAGI--NKPTVSLVLGGGHSI 132 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G ++ ++ ++ + V + + Sbjct: 133 GVPLAVSAKKSFIVPSASMTVHPVRMS----------------GLVLGVPQTLSYFDRMQ 176 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + + + +++ LV+ G + G +A + GLID +GG Sbjct: 177 ERIVRFVTDNSNIEADRFKQLMMTTG-------ELVMDVGTVLDGQKAVEEGLIDSMGGI 229 Query: 231 EEVWQSLYALGVDQSIRK 248 + L + ++ ++ Sbjct: 230 SDAIACLNEMIDEEEAKR 247 >gi|52080286|ref|YP_079077.1| translocation-enhancing protein [Bacillus licheniformis ATCC 14580] gi|52785663|ref|YP_091492.1| TepA [Bacillus licheniformis ATCC 14580] gi|319645933|ref|ZP_08000163.1| TepA protein [Bacillus sp. BT1B_CT2] gi|52003497|gb|AAU23439.1| translocation-enhancing protein [Bacillus licheniformis ATCC 14580] gi|52348165|gb|AAU40799.1| TepA [Bacillus licheniformis ATCC 14580] gi|317391683|gb|EFV72480.1| TepA protein [Bacillus sp. BT1B_CT2] Length = 248 Score = 52.7 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 64/190 (33%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I + ++ L++ L++ GG AG AI + + I + Sbjct: 71 EHVIPQIVAVEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 130 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +SC + I T + + + V + L ++ Sbjct: 131 PIAVSCDHSYIAETATMTIHPVRLTGLVIGVPQTFEYLD-------------------KM 171 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + + + S F L+ N+ D G G +A K GLID GG Sbjct: 172 QERVINFVTSHSNISEEKFKELMFSKGNLTRDI------GTNVVGNDAVKYGLIDETGGV 225 Query: 231 EEVWQSLYAL 240 + Q L L Sbjct: 226 GQAIQKLNEL 235 >gi|154686096|ref|YP_001421257.1| TepA [Bacillus amyloliquefaciens FZB42] gi|154351947|gb|ABS74026.1| TepA [Bacillus amyloliquefaciens FZB42] Length = 245 Score = 52.7 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 25/198 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + I + Sbjct: 68 EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 127 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +SC + I T + + + V + L ++ Sbjct: 128 PIAVSCDHSFIAETATMTIHPVRLTGLVIGVPQTFEYLD-------------------KM 168 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + V + + S F L+ N+ D G G +A GLID VGG Sbjct: 169 QERVVNFVTHHSNISEEKFKELMFSKGNLTRDI------GTNVVGKDAADYGLIDAVGGV 222 Query: 231 EEVWQSLYALGVDQSIRK 248 + + L L ++ + Sbjct: 223 GQAIKKLNQLIEERKGEE 240 >gi|323144789|ref|ZP_08079363.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Succinatimonas hippei YIT 12066] gi|322415435|gb|EFY06195.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Succinatimonas hippei YIT 12066] Length = 200 Score = 52.7 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 63/198 (31%), Gaps = 33/198 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED + ++ ++ + DD + + ++SPGG AG AI+ +Q +K Sbjct: 31 VIFMTGEVEDHMADLIVAQLLFLESDDPDKDIYLYINSPGGVVTAGMAIYDTMQYIKPDV 90 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L A A S + L + + + V Sbjct: 91 CTLCMGQACSMGSFLLAGGAPGKRFALPHSRIMIHQPLGGFKGQASDIMIHARETERV-- 148 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 L+++ D+ + D + + Sbjct: 149 ----------------------------KRTLTELLAKHTGKSVDEVMQDCDRDNFMSAE 180 Query: 217 EAKKVGLIDVVGGQEEVW 234 EA GLID V + Sbjct: 181 EALAYGLIDRVITSRDEI 198 >gi|121607361|ref|YP_995168.1| endopeptidase Clp [Verminephrobacter eiseniae EF01-2] gi|121552001|gb|ABM56150.1| ATP-dependent Clp protease proteolytic subunit ClpP [Verminephrobacter eiseniae EF01-2] Length = 229 Score = 52.7 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 73/202 (36%), Gaps = 4/202 (1%) Query: 41 IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 + I G I+ ++E ++++ ++ + + V +SSPGG +G+ IF AI+ + + Sbjct: 29 VFIIGTIDHKMAKEAVQQLHILASIND-DPIYVFISSPGGHVESGDLIFDAIRFITPKVI 87 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 V++ +A A ++ + + + + + + Sbjct: 88 VVSSGWVASAGALIYVAADKENRYSLPNTHFLLHMKEIIPAGEMTYTETADDRAARERFA 147 Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAE 217 + P + + + R+ +E+ +K + W + + Sbjct: 148 QFVSSSYRKKPPEPVNKSLHEYRTNVMRARLNRIFAEATGQTLEKITADTGHDFWMSAEQ 207 Query: 218 AKKVGLIDVVGGQEEVWQSLYA 239 A + GL+ + E+ +S Sbjct: 208 AVEYGLVHEIIVSEKEIRSQKK 229 >gi|308173642|ref|YP_003920347.1| protein export-enhancing factor [Bacillus amyloliquefaciens DSM 7] gi|307606506|emb|CBI42877.1| protein export-enhancing factor [Bacillus amyloliquefaciens DSM 7] gi|328553426|gb|AEB23918.1| protein export-enhancing factor [Bacillus amyloliquefaciens TA208] Length = 245 Score = 52.3 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 25/198 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + I + Sbjct: 68 EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 127 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +SC + I T + + + V + L ++ Sbjct: 128 PIAVSCDHSFIAETATMTIHPVRLTGLVIGVPQTFEYLD-------------------KM 168 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + V + + + S F L+ N+ D G G +A GLID VGG Sbjct: 169 QERVVNFVTNHSNISEEKFKELMFSKGNLTRDI------GTNVVGKDAADYGLIDAVGGV 222 Query: 231 EEVWQSLYALGVDQSIRK 248 + + L L ++ + Sbjct: 223 GQAIKKLNQLIEERKGEE 240 >gi|307258170|ref|ZP_07539920.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306863355|gb|EFM95288.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 675 Score = 52.3 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 28/216 (12%), Positives = 68/216 (31%), Gaps = 39/216 (18%) Query: 30 HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 ++ S + A I+I +I +Q+ ++ + + + + + SPGGS + G A Sbjct: 16 DIKAKSNNQAEISIYDEIGGWGVSAQQFATDLKALGS--NIKQIDLHIHSPGGSVFDGIA 73 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 IF ++ K + +AAS +I+ N ++ E +++ Sbjct: 74 IFNLLKNHPANKT--VYIDGLAASMASVIAMVGNKVIMPENAMMMIH------------- 118 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 ++ ++ + + ++ Sbjct: 119 -----KPWGIQGGDADDMRKYADLLDKLE------------ATLIPAYASKTGKTEEELA 161 Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYAL 240 + W G EA + G D + + + + Sbjct: 162 QMLAVETWMNGKEAVEQGFADELAEPVQAMAQIQSK 197 >gi|261419480|ref|YP_003253162.1| peptidase S14 ClpP [Geobacillus sp. Y412MC61] gi|319766296|ref|YP_004131797.1| peptidase S14 ClpP [Geobacillus sp. Y412MC52] gi|261375937|gb|ACX78680.1| peptidase S14 ClpP [Geobacillus sp. Y412MC61] gi|317111162|gb|ADU93654.1| peptidase S14 ClpP [Geobacillus sp. Y412MC52] Length = 246 Score = 52.3 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 59/206 (28%), Gaps = 33/206 (16%) Query: 43 IRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I G I + +I +I I ++ L+V L++ GG AG AI + + Sbjct: 53 IEGHIQLPPQNKATKYEHVIPQIVAIEQNPKIEGLLVILNTVGGDVEAGLAIAEMLASLS 112 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + + +SC + I T + I + V + L + Sbjct: 113 KPTVSVVLGGGHSIGVPIAVSCNYSFITETATMTIHPIRLTGLVIGVPQTFEYLDKMQER 172 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 V K + D G Sbjct: 173 VVRFVTKHSKISEEKFKELMFSKGNLTRDI-------------------------GTNVV 207 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYAL 240 G +A + GLID VGG + L L Sbjct: 208 GPDAVRYGLIDEVGGVSQAMVKLREL 233 >gi|167725633|ref|ZP_02408869.1| peptidase S14, ClpP [Burkholderia pseudomallei DM98] Length = 366 Score = 52.3 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 78/205 (38%), Gaps = 39/205 (19%) Query: 30 HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + S VA I I I D+Q + +++ ++ D A+++ V+++S GG + A Sbjct: 13 QAQAGSGKVAEIRIYSDIGFWGTDAQNFVSQLDAVAAD--ASSITVAINSMGGDVFDAFA 70 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+ A+++ + V +AASA L+ A + I E +L+ Sbjct: 71 IYNALRRYAGKVK--GRVDGIAASAASLVLMACDEIEMPENALLMIHH------------ 116 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 +V + K ++ ++ + ++ + D Sbjct: 117 ------PHTVAAGESKDLRRVAELLD------------NASAGILAAYAQRSGLSEDDVR 158 Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGG 229 + D W T A+AK+ G DV+ Sbjct: 159 AMMDAETWLTAAQAKEKGFCDVIET 183 >gi|167744552|ref|ZP_02417326.1| peptidase S14, ClpP [Burkholderia pseudomallei 14] Length = 366 Score = 52.3 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 80/218 (36%), Gaps = 43/218 (19%) Query: 30 HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + VA I I I D+Q + +++ ++ D A+++ V+++S GG + A Sbjct: 13 QAQAGGGKVAEIRIYSDIGFWGTDAQNFVSQLDAVAAD--ASSITVAINSMGGDVFDAFA 70 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+ A+++ + V +AASA L+ A + I E +L+ Sbjct: 71 IYNALRRYAGKVK--GRVDGIAASAASLVLMACDEIEMPENALLMIHH------------ 116 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 +V + K ++ ++ + ++ + D Sbjct: 117 ------PHTVAAGESKDLRRVAELLD------------NASAGILAAYAQRSGLSEDDVR 158 Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + D W T A+AK+ G DV+ E L A Sbjct: 159 AMMDAETWLTAAQAKEKGFCDVI----EAPVKLAASAG 192 >gi|150390788|ref|YP_001320837.1| hypothetical protein Amet_3038 [Alkaliphilus metalliredigens QYMF] gi|149950650|gb|ABR49178.1| protein of unknown function DUF107 [Alkaliphilus metalliredigens QYMF] Length = 432 Score = 52.3 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 49/279 (17%), Positives = 107/279 (38%), Gaps = 43/279 (15%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISR 62 ++K + + + L+ ++ + V I I G+I + Q +++ ++ + Sbjct: 1 MRKRERFLIAILLIFAGLIM---HTTAAPQEKIVYVIPIHGEIGPAVYQYMLDNLKVAEQ 57 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D + A++ + + GG + E + I+ + P I+ V+ A SAG L++ +++ + Sbjct: 58 DPNTVAVVFEIDTYGGRVDSAERMSYYIR--NSSVPTISFVNTKAESAGVLLTISADQVA 115 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A+ S +GS + P + L +++V + + Sbjct: 116 MAQGSTIGSAEPI---PNTEKSLSYWVSELRTVAQQKGRDD------------------- 153 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRI--WTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +LV+ + V+ GR+ T EA K+GL D+V + L L Sbjct: 154 --------QLVAAMADESIAIENVIESGRLLNLTNQEALKLGLADLVA--ADTLAVLEGL 203 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLM 279 V +I + L S+ + + T+ + Sbjct: 204 NV--EYTQIINTPMSARVRTAQLATSSVVTPILLTLGFV 240 >gi|291615232|ref|YP_003525389.1| hypothetical protein Slit_2777 [Sideroxydans lithotrophicus ES-1] gi|291585344|gb|ADE13002.1| protein of unknown function DUF107 [Sideroxydans lithotrophicus ES-1] Length = 463 Score = 52.3 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 104/288 (36%), Gaps = 19/288 (6%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSS 75 + ++ +W+ + P V + + G I + ++ + + D SA +++ + + Sbjct: 7 LLSGLILATWAGCAMASGPVVVVLDVDGAISPGTADYVVRGMRSAA-DQSAQLIVLKMDT 65 Query: 76 PGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 PGG + I + I + AASAG I AS+I A + +G+ Sbjct: 66 PGGLDTSMRQIIKQIIASPIPVAAFVAPNGARAASAGTYILYASHIAAMAPATNLGAATP 125 Query: 135 LFQYPYVKPFLDKLGVSI-KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + D+ + + A P+P P + V D+S + Sbjct: 126 VMIGLGGVGTGDQPQKEDKDNTQEKDAGANPAPAKTAAPLTALEHKQVNDASAYIRSLAQ 185 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSL---------YALGVD 243 RN+ + + + T AEA K+ +IDV+ ++ + L +D Sbjct: 186 MRGRNVQWAE-QAVRQAVSLTAAEALKLKVIDVIAADVPDLLRQLDGRKVNVLGAERTLD 244 Query: 244 QSIRKIKDWNP-PKNYWFCDLKNLSISSL--LEDTIPLMKQTKVQGLW 288 + +I P ++ + + SI+ L L + + G Sbjct: 245 VAGARIVALEPDWRSRLLSVIADPSIAYLLMLAGVFGIFFEFSNPGFV 292 >gi|167619474|ref|ZP_02388105.1| peptidase S14, ClpP [Burkholderia thailandensis Bt4] Length = 366 Score = 52.3 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 80/218 (36%), Gaps = 43/218 (19%) Query: 30 HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + VA I I I D+Q + +++ ++ D A+++ V+++S GG + A Sbjct: 13 QAQVGGGKVAEIRIYSDIGFWGTDAQNFVSQLDAVAAD--ASSITVAINSMGGDVFDAFA 70 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+ A+++ + V +AASA L+ A + I E +L+ Sbjct: 71 IYNALRRYAGKVK--GRVDGIAASAASLVLMACDEIEMPENALLMIHH------------ 116 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 +V + K ++ ++ + ++ + D Sbjct: 117 ------PHTVAAGESKDLRRVAELLD------------NASAGILAAYAQRSGLSEDDVR 158 Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + D W T A+AK+ G DV+ E L A Sbjct: 159 AMMDAETWLTAAQAKEKGFCDVI----EAPVKLAASAG 192 >gi|328911782|gb|AEB63378.1| protein export-enhancing factor [Bacillus amyloliquefaciens LL3] Length = 249 Score = 52.3 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 25/198 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + I + Sbjct: 72 EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 131 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +SC + I T + + + V + L ++ Sbjct: 132 PIAVSCDHSFIAETATMTIHPVRLTGLVIGVPQTFEYLD-------------------KM 172 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + V + + + S F L+ N+ D G G +A GLID VGG Sbjct: 173 QERVVNFVTNHSNISEEKFKELMFSKGNLTRDI------GTNVVGKDAADYGLIDAVGGV 226 Query: 231 EEVWQSLYALGVDQSIRK 248 + + L L ++ + Sbjct: 227 GQAIKKLNQLIEERKGEE 244 >gi|254520131|ref|ZP_05132187.1| endopeptidase Clp [Clostridium sp. 7_2_43FAA] gi|226913880|gb|EEH99081.1| endopeptidase Clp [Clostridium sp. 7_2_43FAA] Length = 198 Score = 52.3 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D+ ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IIMLSGEINDTTSNLVVSQLLFLESEDPDKDIHLYINSPGGSITAGMAIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L S A S + L + D I + Sbjct: 89 STICIGMAASMGSFLLSSGAKGKRFVLPNSEIMIHQPLGGFQGQATDFDIHARRIIKI-- 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 R++SE+ N P +K + T Sbjct: 147 ----------------------------KESLNRILSENTNQPLEKIKTDVERDYFMTAE 178 Query: 217 EAKKVGLIDVVGGQEE 232 EA GL+D V + + Sbjct: 179 EAMNYGLVDKVITKND 194 >gi|213621365|ref|ZP_03374148.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 107 Score = 52.3 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 2/97 (2%) Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 FL + I+ + K + E + Q ++ ++ ++H F V R P Sbjct: 1 RFLKSKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMR--PAL 58 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 ++ G W G +A + GL+D + +EV L Sbjct: 59 DIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLME 95 >gi|167824886|ref|ZP_02456357.1| peptidase S14, ClpP [Burkholderia pseudomallei 9] gi|226198878|ref|ZP_03794441.1| peptidase S14, ClpP [Burkholderia pseudomallei Pakistan 9] gi|225928978|gb|EEH25002.1| peptidase S14, ClpP [Burkholderia pseudomallei Pakistan 9] Length = 364 Score = 52.3 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 81/221 (36%), Gaps = 43/221 (19%) Query: 27 WSSHVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 W + VA I I I D+Q + +++ ++ D A+++ V+++S GG + Sbjct: 8 WDIRAQAGGGKVAEIRIYSDIGFWGTDAQNFVSQLDAVAAD--ASSITVAINSMGGDVFD 65 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 AI+ A+++ + V +AASA L+ A + I E +L+ Sbjct: 66 AFAIYNALRRYAGKVK--GRVDGIAASAASLVLMACDEIEMPENALLMIHH--------- 114 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 +V + K ++ ++ + ++ + D Sbjct: 115 ---------PHTVAAGESKDLRRVAELLD------------NASAGILAAYAQRSGLSED 153 Query: 203 KTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + D W T A+AK+ G DV+ E L A Sbjct: 154 DVRAMMDAETWLTAAQAKEKGFCDVI----EAPVKLAASAG 190 >gi|295105822|emb|CBL03365.1| ATP-dependent Clp protease proteolytic subunit ClpP [Gordonibacter pamelaeae 7-10-1-b] Length = 211 Score = 52.3 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 27/205 (13%), Positives = 61/205 (29%), Gaps = 33/205 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + QI+D + ++ ++ + D + + ++SPGGS AG AI + +K Sbjct: 35 VIFLGEQIDDNVANSVVAQLLHLESADPEKDISLYINSPGGSVTAGLAILDTMDFIKCDV 94 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L + A + S+V + + + Sbjct: 95 STICLGECASMAAVLLSNGAKGKRMCLPNSMVLIHQPSGGAQGQQTEIAIVAD------- 147 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + + ++++++ + T Sbjct: 148 -----------------------FMLKTRNRLNKILADNTGQTLETIQADTERDNYMTAE 184 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALG 241 EA GL+D + Sbjct: 185 EALAYGLVDRITTSRAAAADTEEKK 209 >gi|167814835|ref|ZP_02446515.1| peptidase S14, ClpP [Burkholderia pseudomallei 91] gi|167911620|ref|ZP_02498711.1| peptidase S14, ClpP [Burkholderia pseudomallei 112] Length = 366 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 80/218 (36%), Gaps = 43/218 (19%) Query: 30 HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + VA I I I D+Q + +++ ++ D A+++ V+++S GG + A Sbjct: 13 QAQAGGGKVAEIRIYSDIGFWGTDAQNFVSQLDAVAAD--ASSITVAINSMGGDVFDAFA 70 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+ A+++ + V +AASA L+ A + I E +L+ Sbjct: 71 IYNALRRYAGKVK--GRVDGIAASAASLVLMACDEIEMPENALLMIHH------------ 116 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 +V + K ++ ++ + ++ + D Sbjct: 117 ------PHTVAAGESKDLRRVAELLD------------NASAGILAAYAQRSGLSEDDVR 158 Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + D W T A+AK+ G DV+ E L A Sbjct: 159 AMMDAETWLTAAQAKEKGFCDVI----EAPVKLAASAG 192 >gi|134277934|ref|ZP_01764649.1| Clp protease domain protein [Burkholderia pseudomallei 305] gi|134251584|gb|EBA51663.1| Clp protease domain protein [Burkholderia pseudomallei 305] Length = 359 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 80/218 (36%), Gaps = 43/218 (19%) Query: 30 HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + VA I I I D+Q + +++ ++ D A+++ V+++S GG + A Sbjct: 13 QAQAGGGKVAEIRIYSDIGFWGTDAQNFVSQLDAVAAD--ASSITVAINSMGGDVFDAFA 70 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+ A+++ + V +AASA L+ A + I E +L+ Sbjct: 71 IYNALRRYAGKVK--GRVDGIAASAASLVLMACDEIEMPENALLMIHH------------ 116 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 +V + K ++ ++ + ++ + D Sbjct: 117 ------PHTVAAGESKDLRRVAELLD------------NASAGILAAYAQRSGLSEDDVR 158 Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + D W T A+AK+ G DV+ E L A Sbjct: 159 AMMDAETWLTAAQAKEKGFCDVI----EAPVKLAASAG 192 >gi|169829216|ref|YP_001699374.1| phage protein [Lysinibacillus sphaericus C3-41] gi|168993704|gb|ACA41244.1| phage protein [Lysinibacillus sphaericus C3-41] Length = 355 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 74/212 (34%), Gaps = 50/212 (23%) Query: 39 ARIAIRGQIEDS----------------QELIERIERISRDDSATALIVSLSSPGGSAYA 82 ARI IRG I + ++++I+R + L+V+++SPGGS YA Sbjct: 2 ARIDIRGAIVPDGEQWIYDWYGIPAVSPKRIMQQIDRAINNQE-KELVVNINSPGGSVYA 60 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I+ I+K ++E+ + ASA +I+ AS +V A + Sbjct: 61 ASEIWTHIKKYP--GNSVSEISGVCASAASIIALASKKVVIAPVGALMIHNAS------- 111 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 + + S + + ++ E + Sbjct: 112 -----------VIAEGDYREMESMKQLL------------IQTNDAIMQTYKEKTKKSDE 148 Query: 203 KTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEV 233 + + D W +A + G +D + EE+ Sbjct: 149 ELKQMMDAETWMNAQQAVENGFVDEIMFAEEM 180 >gi|32476642|ref|NP_869636.1| ATP-dependent Clp protease proteolytic subunit [Rhodopirellula baltica SH 1] gi|67460513|sp|Q7UK67|CLPP1_RHOBA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; AltName: Full=Endopeptidase Clp 1 gi|32447188|emb|CAD77014.1| ATP-dependent clp protease proteolytic subunit [Rhodopirellula baltica SH 1] Length = 227 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + ++G+I ++ E++ ++ + ++ + + ++SPGGS A AI+ +Q + Sbjct: 55 IVFMQGEIHYANANEIVMKLLYLQSENRRKDIHLYINSPGGSVTATLAIYDTMQMLSCPV 114 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + +A LI A S V L ++ + Sbjct: 115 ATYCVGEACSGAAVLLIGGAKGKRFCLPNSRVMMHQPLGGVSGQVSDIEIQAAEM----- 169 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 ++S ++ +D + Sbjct: 170 -------------------------FRYRDKLNEIISSHCGKSVEQIAKDTDRDFFLDAQ 204 Query: 217 EAKKVGLIDVV 227 +AK+ GL+D + Sbjct: 205 QAKEYGLVDDL 215 >gi|304404310|ref|ZP_07385972.1| peptidase S14 ClpP [Paenibacillus curdlanolyticus YK9] gi|304347288|gb|EFM13120.1| peptidase S14 ClpP [Paenibacillus curdlanolyticus YK9] Length = 249 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 25/187 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + LI ++ ++ +++ L++ GG AG AI I + + Sbjct: 71 EHLIPQLVAAEQNPKIEGILIVLNTVGGDVEAGLAIAEMISSLTKPTVTL---------- 120 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 ++ S+ I V + ++I ++ + + E Sbjct: 121 ----------VLGGGHSIGVPIAVSANR---SFIAESATMTIHPIRLNGLVIGVPQTFEY 167 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 K + + V S + +L E + T + G GA+A K GLID VGG Sbjct: 168 LDKMQERVVRFVTSHSNISEQLFKELMFKTGELTRDI--GTTVIGADAVKHGLIDAVGGI 225 Query: 231 EEVWQSL 237 + +L Sbjct: 226 GDALIAL 232 >gi|319649503|ref|ZP_08003659.1| TepA protein [Bacillus sp. 2_A_57_CT2] gi|317398665|gb|EFV79347.1| TepA protein [Bacillus sp. 2_A_57_CT2] Length = 246 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 25/198 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + LI +I I ++ L+V L++ GG AG AI + + I Sbjct: 69 EHLIPQIVAIEQNPKIEGLLVILNTVGGDVEAGLAISEMLASLSKPTVSI---------- 118 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + ++ + + + +L + V ++ Sbjct: 119 ----VLGGGHSIGVPIAVSCDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYMDKM 169 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + + + S F L+ + N+ D G G +A + GLID VGG Sbjct: 170 QDRVINFVTKHSNISEQKFKDLMFDKGNLTRDI------GTNVVGRDAVEYGLIDEVGGV 223 Query: 231 EEVWQSLYALGVDQSIRK 248 L L ++ Sbjct: 224 GPALAKLNELIDMNKPKE 241 >gi|160880890|ref|YP_001559858.1| peptidase S14 ClpP [Clostridium phytofermentans ISDg] gi|160429556|gb|ABX43119.1| peptidase S14 ClpP [Clostridium phytofermentans ISDg] Length = 316 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 37/231 (16%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 + + ++I G+IE + ++ ++ I D L++ +++ G Sbjct: 111 EDNGKNHKIHLLSIIGEIEGHECLSQNAKTTKYEHVLPQLATIEDDTETDGLLILINTVG 170 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G G A+ I + + + ++ + IV T +V + + Sbjct: 171 GDVSCGLALAEMIASLSKPTVSLVIGDSHSIGVPLAVATNYSFIVPTGTMIVHPVRMSGM 230 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 D + + + + + Sbjct: 231 VIGAPQTYDYFKLIQDRIV--------------------GFVSSHSKIKKEKLEQLMLNT 270 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 + G I G EA G+I+ VGG ++ + L+ + +++ + Sbjct: 271 GMLSKDL-----GTILVGDEAVAEGIINEVGGIKQAIEKLHQMIEEKNSNR 316 >gi|330948557|gb|EGH48817.1| peptidase S49, SppA [Pseudomonas syringae pv. pisi str. 1704B] Length = 75 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 8/83 (9%) Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 L G IWTG +A +GL+D +G V + + + I ++ ++ + K Sbjct: 1 PELFSGLIWTGEQAVALGLVDGLGSASYVARDVIK------EKDIVEYTVEESPFDRFSK 54 Query: 265 NLSISSLLEDTIPLMKQTKVQGL 287 L S + + I ++ L Sbjct: 55 KLGTS--IAERIAMLVGFNGPSL 75 >gi|323701887|ref|ZP_08113557.1| peptidase S14 ClpP [Desulfotomaculum nigrificans DSM 574] gi|323533191|gb|EGB23060.1| peptidase S14 ClpP [Desulfotomaculum nigrificans DSM 574] Length = 272 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 72/214 (33%), Gaps = 33/214 (15%) Query: 43 IRGQIE--------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I G I + +I ++ I + + +++ L++ GG AG AI I Sbjct: 79 IEGHIMLPSQNKTTKYEHIIPQLVGIEQAEDIEGVLLILNTVGGDVEAGLAIAEVIA--T 136 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 KP ++ V S G I+ +SN A T+ + + L+ L + + Sbjct: 137 MTKPTVSLVLGGGHSIGVPIAVSSNYSFIAPTASMTIHPIR---------LNGLVIGVPQ 187 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 K + V + Q D + G + Sbjct: 188 TYDYLDKMQDRVIRFVTEHSKISEQKFRDLMFKTGELAR--------------DIGTVVI 233 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 G +A + GLID VGG + L + ++ K Sbjct: 234 GKDAVEYGLIDEVGGIGKALAKLKQMIEERKTTK 267 >gi|260906247|ref|ZP_05914569.1| ATP-dependent Clp protease proteolytic subunit [Brevibacterium linens BL2] Length = 210 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 52/187 (27%), Gaps = 27/187 (14%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D + + ++SPGGS A AI+ +Q +K + + Sbjct: 51 TSADDVMAQLLVLESQDPDRDITLYINSPGGSFTAMTAIYDTMQYIKPEIQTVCLGQAAS 110 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + +A + V + D + + + Sbjct: 111 AAAVLLAAGTPGKRLALPNARVLIHQPAMEGQGQGQASDIEIQAAEVFRMRQWLETTLSD 170 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 + T +AK GL+D V Sbjct: 171 HSNKSPEQVS---------------------------NDIERDLFLTAEQAKDYGLVDQV 203 Query: 228 GGQEEVW 234 + Sbjct: 204 LTSRKAV 210 >gi|118382549|ref|XP_001024432.1| peptidase, S49 (protease IV) family protein [Tetrahymena thermophila] gi|89306199|gb|EAS04187.1| peptidase, S49 (protease IV) family protein [Tetrahymena thermophila SB210] Length = 184 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 8/152 (5%) Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 + PV T +M ++ LI + N + A + SL+G G +Q K L+ V Sbjct: 1 MIKSAPVYTFAEDMVLNSANLILSSGNKVFAGKYSLLGDFGYSYQGFGYKGLLENYNVKA 60 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL------- 205 + V + K + +PF ++ + Q M++ + S + V ++R + Sbjct: 61 EFVHAGEKKVKLNPFQDLKQEDAQWMKNYLLESEYDLKSSVIQTRAQKFHDLKLSNEQVN 120 Query: 206 -VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 L + + +AK++GLID + EE+ Sbjct: 121 KELLEKGMIEAEQAKQIGLIDGIKTFEELAHE 152 >gi|294677522|ref|YP_003578137.1| S49 family peptidase [Rhodobacter capsulatus SB 1003] gi|3128372|gb|AAC16224.1| potential peptidase [Rhodobacter capsulatus SB 1003] gi|294476342|gb|ADE85730.1| peptidase, S49 family [Rhodobacter capsulatus SB 1003] Length = 303 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 10/179 (5%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 ++V +PGG E A++ + KPV +AASAGY ++ + +V + Sbjct: 100 VVVEFDTPGGYTLGIEDAVTALRDLAAVKPVHALAAPLAASAGYWLASQARELVMTPRAA 159 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 VGS + ++ + A ++ +D + Sbjct: 160 VGS--IGVAVTAAANVAPGAASGVQLFDFTSRHARAKWPDPATEDGKAEIRRGLDRTEAR 217 Query: 189 FVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 F V+E R I + G ++ AEA GL D + + + L A Sbjct: 218 FHAAVAEGRGIAPEDLAARLSVSDDPEDGGAVFEAAEALARGLADRIETRAAFYARLRA 276 >gi|331084073|ref|ZP_08333180.1| hypothetical protein HMPREF0992_02104 [Lachnospiraceae bacterium 6_1_63FAA] gi|330402435|gb|EGG82005.1| hypothetical protein HMPREF0992_02104 [Lachnospiraceae bacterium 6_1_63FAA] Length = 234 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 37/231 (16%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 + H+ ++I G++E + ++ ++ I L++ L++ G Sbjct: 28 EENEKEYHIQLLSIIGEVEGHECLPNNSKTTKYEHVLPKLAMIEDSKETDGLLILLNTVG 87 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G AG AI I + + + +S + IV + T ++ + Sbjct: 88 GDVEAGLAIAEMIASLSKPTVSLVLGGGHSIGVPMAVSADYSYIVPSATMVIHPVRSNGM 147 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + V + + P + + Q V D Sbjct: 148 FIGVMQTYRNMEKIQDRITRFIASHSKMPQKRIEQLMLDTSQLVKDV------------- 194 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 G + G EA K GLID GG + LY L + +K Sbjct: 195 ------------GTMLEGEEAVKEGLIDETGGICQALHKLYELIEKEKAQK 233 >gi|322378952|ref|ZP_08053366.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter suis HS1] gi|322379806|ref|ZP_08054103.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter suis HS5] gi|321147774|gb|EFX42377.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter suis HS5] gi|321148628|gb|EFX43114.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter suis HS1] Length = 197 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I D+ ++ ++ + +D + + ++SPGGS +G +I+ + + Sbjct: 29 IVLLSGEINDAVASTIVAQLLFLEAEDPEKDINLYINSPGGSVTSGLSIYDTMNYIHPDI 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + + + L + Sbjct: 89 CTICIGQAASMGAFLLSCGTKGKRFSLPHARIMIHQPLGGTEGQATNIAIYTKE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + ++++E+ +K SD + + Sbjct: 143 ------------------------ILRLKNTLNQIMAENTGQTLEKIEQDSDRDFFMSAE 178 Query: 217 EAKKVGLIDVV 227 +AK+ GL+D V Sbjct: 179 DAKEYGLVDAV 189 >gi|311068202|ref|YP_003973125.1| TepA protein [Bacillus atrophaeus 1942] gi|310868719|gb|ADP32194.1| TepA [Bacillus atrophaeus 1942] Length = 245 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 67/198 (33%), Gaps = 25/198 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + I + Sbjct: 68 EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 127 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +SC + I T + + + V + L ++ Sbjct: 128 PIAVSCDYSYIAETATMTIHPVRLTGLVIGVPQTFEYLD-------------------KM 168 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + V+ + + + F L+ N+ D G G +A GLID VGG Sbjct: 169 QDRVVKFVTSHSNVTEEKFKELMFSKGNLTRDI------GTNVVGKDAADYGLIDDVGGV 222 Query: 231 EEVWQSLYALGVDQSIRK 248 + + L L + + Sbjct: 223 GQAIKKLNQLIEEAKGEE 240 >gi|325107894|ref|YP_004268962.1| ATP-dependent Clp protease proteolytic subunit ClpP [Planctomyces brasiliensis DSM 5305] gi|324968162|gb|ADY58940.1| ATP-dependent Clp protease proteolytic subunit ClpP [Planctomyces brasiliensis DSM 5305] Length = 215 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 27/204 (13%), Positives = 65/204 (31%), Gaps = 33/204 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D+ ++ ++ + ++ + + ++SPGGS A AI+ +Q + Sbjct: 43 IIFLDGPIHDASANLIVMKLLYLQSENRHQDVHLYINSPGGSVTATLAIYDTMQFLDCDV 102 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A + A + S + Q Sbjct: 103 ATYCVGLAASGGAVLMAGGAKGKRYSLPHSKMMIHQPFGQ-------------------V 143 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 ++ ++ + + ++ + +++ R T E Sbjct: 144 GGQVSDIEIQAQEIINTRETLNQILADHTGQPIERIAK----------DTERDRYLTAKE 193 Query: 218 AKKVGLIDVVGGQEEVWQSLYALG 241 AK+ GL+D V E++ ++ Sbjct: 194 AKEYGLVDEV--VEKIKKTAAEKA 215 >gi|237812956|ref|YP_002897407.1| peptidase S14, ClpP [Burkholderia pseudomallei MSHR346] gi|237505260|gb|ACQ97578.1| peptidase S14, ClpP [Burkholderia pseudomallei MSHR346] Length = 366 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 79/218 (36%), Gaps = 43/218 (19%) Query: 30 HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + VA I I I D+Q + +++ ++ D A+++ V+++S GG + A Sbjct: 13 QAQAGGGKVAEIRIYSDIGFWGTDAQNFVSQLDAVAAD--ASSITVAINSMGGDVFDAFA 70 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+ A+++ + V +AASA L+ A + I E +L+ Sbjct: 71 IYNALRRYAGKVK--GRVDGIAASAASLVLMACDEIEMPENALLMIHH------------ 116 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 +V + K ++ ++ + + + D Sbjct: 117 ------PHTVAAGESKDLRRVAELLD------------NASAGILAAYARRSGLSEDDVR 158 Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + D W T A+AK+ G DV+ E L A Sbjct: 159 AMMDAETWLTAAQAKEKGFCDVI----EAPVKLAASAG 192 >gi|169830994|ref|YP_001716976.1| peptidase S14, ClpP [Candidatus Desulforudis audaxviator MP104C] gi|169637838|gb|ACA59344.1| peptidase S14, ClpP [Candidatus Desulforudis audaxviator MP104C] Length = 266 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 57/198 (28%), Gaps = 25/198 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + ++ ++ + + ++V L++ GG AG AI + + + + Sbjct: 83 EHILPQLVALEQHPDIEGILVILNTVGGDVEAGLAIAEMLSSISKPTVSLVLGGGHSIGV 142 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + + I + + I + Q V + L V +K Sbjct: 143 PIAVCTSYSYIAETASMTIHPIRITGQILTVPQTFEYLEKMQDRVVRFVVKHSRIT---- 198 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + G + G EA GLID VGG Sbjct: 199 --EERFRELMFRTGELARDI-------------------GTVLIGKEAVDCGLIDEVGGI 237 Query: 231 EEVWQSLYALGVDQSIRK 248 + L L I K Sbjct: 238 GASMRKLNELVEQARIGK 255 >gi|255658239|ref|ZP_05403648.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mitsuokella multacida DSM 20544] gi|260849549|gb|EEX69556.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mitsuokella multacida DSM 20544] Length = 199 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 59/193 (30%), Gaps = 31/193 (16%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D+ ++ ++ + +D + + ++SPGG AG AI+ +Q +K Sbjct: 24 IIFLGGPIDDAVANTVVAQLLFLESEDPDKDIHLYINSPGGVVTAGLAIYDTMQYIKPDV 83 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A + + L + I+ ++ Sbjct: 84 STICIGQAASMGALLLTAGAKGKRYALPNARIMIHQPLGGAQGQSTDIQIQAREIQRIR- 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 LV + T E Sbjct: 143 ----------------------------EVINDILVESTGKDRETVVQDTERDNFMTAEE 174 Query: 218 AKKVGLIDVVGGQ 230 AK GL+D V + Sbjct: 175 AKAYGLVDEVITR 187 >gi|167893326|ref|ZP_02480728.1| peptidase S14, ClpP [Burkholderia pseudomallei 7894] Length = 358 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 43/218 (19%) Query: 30 HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + VA I I I D+Q + +++ I+ D A+++ V+++S GG + A Sbjct: 13 QAQAGGGKVAEIRIYSDIGFWGTDAQNFVSQLDAIATD--ASSITVAINSMGGDVFDAFA 70 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+ A+++ + V +AASA L+ A + I E +L+ Sbjct: 71 IYNALRRYAGKVK--GRVDGIAASAASLVLMACDEIEMPENALLMIHH------------ 116 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 +V + K ++ ++ + ++ + D Sbjct: 117 ------PHTVAAGESKDLRRVAELLD------------NASAGILAAYAQRSGLSEDDVR 158 Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + D W T A+AK+ G DV+ E L A Sbjct: 159 AMMDAETWLTAAQAKEKGFCDVI----EAPVKLAASAG 192 >gi|51892696|ref|YP_075387.1| ATP-dependent Clp protease proteolytic subunit [Symbiobacterium thermophilum IAM 14863] gi|51856385|dbj|BAD40543.1| ATP-dependent clp protease proteolytic subunit [Symbiobacterium thermophilum IAM 14863] Length = 260 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 72/227 (31%), Gaps = 37/227 (16%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73 ++ V SP++ + I GQ+E + +I ++ + + L++ L Sbjct: 46 IGTTSVPQVSPNIHLLTIIGQVEGHLALPPQNKTTKYEHIIPQLVAVEQSPEIEGLLLVL 105 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 ++ GG AG AI + + + + + ++ + Sbjct: 106 NTVGGDVEAGLAIAEMVASL--------------SKPSVSLVLGGGHSIGVPIAVSTTYS 151 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + + +L + V ++ + V+ + S F L+ Sbjct: 152 FIAATATMTIHPIRLTGLVIGVP-----QTYEYLDKMQDRVVRFVVSNSRISEERFRELM 206 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 G + G +A + GLID VGG + L L Sbjct: 207 F-RTGELARDV-----GTVVVGPDAVREGLIDEVGGLSDAVAKLNQL 247 >gi|145633616|ref|ZP_01789343.1| predicted inner membrane peptidase [Haemophilus influenzae 3655] gi|144985493|gb|EDJ92309.1| predicted inner membrane peptidase [Haemophilus influenzae 3655] Length = 127 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 3/100 (3%) Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 K + E K Q Q ++ ++ F + VS++R ++ G W G + Sbjct: 4 GEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATGEHWFGQQ 61 Query: 218 AKKVGLIDVVGGQEEVW-QSLYALGVDQSIRKIKDWNPPK 256 A + L+D + +++ + + V ++K K Sbjct: 62 AIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKK 101 >gi|150390425|ref|YP_001320474.1| peptidase S14, ClpP [Alkaliphilus metalliredigens QYMF] gi|149950287|gb|ABR48815.1| peptidase S14, ClpP [Alkaliphilus metalliredigens QYMF] Length = 254 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 80/230 (34%), Gaps = 37/230 (16%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALI 70 + + ++ + + I G IE + +I ++ + ++ + ++ Sbjct: 38 IQALGTPNIPQMDQSIHVLTIIGHIEGHMVAPPQNKSTKYEHVIPQLMTVEQNPNVEGML 97 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 V L++ GG AG A+ I + KP +T V S G ++ A + A ++ + Sbjct: 98 VILNTAGGDVEAGLALSELINTL--SKPTVTLVLGGGHSIGVPLATAGDYSFIAPSATMT 155 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 + + FS++ + + + + + F+ Sbjct: 156 IHPIRMTGLVIGVP-----------------QTFQYFSKMQDRIIDFVVNNSNVDKDIFI 198 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 L++ L G I G +A K LID VGG + L L Sbjct: 199 ELMNT------TDELANDVGTILIGEDAVKHKLIDEVGGLDRAMAKLREL 242 >gi|158316682|ref|YP_001509190.1| endopeptidase Clp [Frankia sp. EAN1pec] gi|158112087|gb|ABW14284.1| Endopeptidase Clp [Frankia sp. EAN1pec] Length = 236 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 43 IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102 + I ++ + ++ ++ DD + + + ++SPGGS AG AI+ +Q + N + Sbjct: 57 VEDTIANA--ICAKLLLLASDDPSADIHLYINSPGGSVSAGMAIYDTMQYIANDVATVAL 114 Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 + L S A A S V Sbjct: 115 GFAGSMGQFLLSSGAPGKRFALPHSRVMMHQPSGGIGG---------------------- 152 Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKV 221 + + + + + ++E P ++ SD R +T EA+ Sbjct: 153 --------TATDIAIQAEQLLFTKRLIQERIAEHTGQPVERIEADSDRDRWFTAEEARDY 204 Query: 222 GLIDVVGGQEE 232 GL+D V + + Sbjct: 205 GLVDRVITRVD 215 >gi|90410782|ref|ZP_01218797.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium profundum 3TCK] gi|90328413|gb|EAS44711.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium profundum 3TCK] Length = 207 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 63/196 (32%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + I ++ Sbjct: 102 STVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQIHAQEILTI-- 159 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L++E P + + Sbjct: 160 ----------------------------KQRLNNLLAEHTGQPLEIVEGDTDRDNFMSAD 191 Query: 217 EAKKVGLIDVVGGQEE 232 +A + GL+D V Q + Sbjct: 192 QAVEYGLVDSVLTQRD 207 >gi|294846003|gb|ADF43161.1| SPP1Cm [Chlamydomonas reinhardtii] Length = 631 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 24/119 (20%) Query: 35 SPHVARIAIRGQIE-----------------------DSQELIERIERISRDDSATALIV 71 P +A + + G I D+ +L+ + + D+ A++V Sbjct: 405 EPCIAVVTVSGTIVQGPVPPGSLAANNQQQQQQQQVVDAAKLVADLRMMMDDNLVRAVVV 464 Query: 72 SLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 ++SPGGSA A ++I R +Q++K K V+ + ++AA Y I+ A+N +VA ++ Sbjct: 465 RVNSPGGSALASDSIRRELQRLKTLGKTVVVSMGDVAAGGAYYIASAANAVVAQPGTVT 523 >gi|295102204|emb|CBK99749.1| ATP-dependent Clp protease proteolytic subunit ClpP [Faecalibacterium prausnitzii L2-6] Length = 228 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 49/188 (26%), Gaps = 25/188 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ + D + L+V L++ GG AG A+ I + + + Sbjct: 60 EHVIPQLVAVQEDPAIEGLLVLLNTVGGDVEAGLALAELIASISKPSAAVVLGGGHSIGI 119 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 A + ++ P + ++ + Sbjct: 120 PL-AVSAQRSFIVPTATMTIHPVRHSGMILGVPQTMRWFEQMQERITG------------ 166 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + G + G +A + LID +GG Sbjct: 167 -------FVASHSGISEKRYTELMMRTGELVMDV-----GTVLDGRKAVREKLIDELGGL 214 Query: 231 EEVWQSLY 238 + LY Sbjct: 215 SDALAWLY 222 >gi|188586087|ref|YP_001917632.1| ATP-dependent Clp protease proteolytic subunit ClpP [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350774|gb|ACB85044.1| ATP-dependent Clp protease proteolytic subunit ClpP [Natranaerobius thermophilus JW/NM-WN-LF] Length = 280 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 71/195 (36%), Gaps = 25/195 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + ++ ++ ++ ++V L++ GG AG AI + + KP ++ V S Sbjct: 72 EHVLPQLVAAEQNPQVEGILVILNTVGGDVEAGLAIAEMLDSI--SKPSVSLVLGGGHSI 129 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G I+ A++ A+T+ + + + + P + + Sbjct: 130 GVPIAVATDYSYIAQTATMTIHPIR--------------------LTGQLIGVPQTYDYL 169 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 +++ V S +L R + L G + G +A + GLI+ VGG Sbjct: 170 EKMQDRVLSFVTQHSGIHPEQL---RRLMFNSGQLARDIGTVLVGEDAVREGLINEVGGI 226 Query: 231 EEVWQSLYALGVDQS 245 + L ++ Sbjct: 227 GQAVNRLESMLRRGD 241 >gi|146163651|ref|XP_001012050.2| hypothetical protein TTHERM_00984990 [Tetrahymena thermophila] gi|146145966|gb|EAR91805.2| hypothetical protein TTHERM_00984990 [Tetrahymena thermophila SB210] Length = 332 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 12/172 (6%) Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 EA+ +A +K++ P+ T + A YL+ + A S++GSI Y Sbjct: 69 TFYEALRQASEKLRA--PLYTFSEDQALGDSYLLLSLGETVTANPFSIIGSINSRINYIS 126 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + ++LG+ SS P + P +Q+ + L+ + R Sbjct: 127 FEKLFERLGIKYDIYTSSSPA--FLPSRKPTPSDIQLAEQSNQEVLESIQNLILQKRGKH 184 Query: 201 YD--------KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 ++ + G+ +T +A K GLID +G E S+Y+ + Sbjct: 185 FENKGISREQAKKEILSGQTFTAQQALKNGLIDQIGTFYEFKDSMYSHHKIR 236 >gi|257063882|ref|YP_003143554.1| protease subunit of ATP-dependent protease [Slackia heliotrinireducens DSM 20476] gi|256791535|gb|ACV22205.1| protease subunit of ATP-dependent protease [Slackia heliotrinireducens DSM 20476] Length = 206 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 60/195 (30%), Gaps = 31/195 (15%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D+ ++ ++ + D + + ++SPGGS AG AI+ A+Q ++ Sbjct: 34 IIFLGDAIDDNVANLVVAQLLHLESSDPEKDISLYINSPGGSVSAGMAIYDAMQFIRCDV 93 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + ++ + S + + D + + Sbjct: 94 STVCIGMAASMASVLTAAGTPGKRFITPNSQIMIHQPMGGAESRTQQTDFEIAATE---- 149 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +++ + S+ W T Sbjct: 150 ------------------------MRKTRERLEGILAAHTGQTIETIHADSERDHWLTAE 185 Query: 217 EAKKVGLIDVVGGQE 231 EAK GL+D + Sbjct: 186 EAKAYGLVDEIITSR 200 >gi|261250806|ref|ZP_05943380.1| nfed family protein [Vibrio orientalis CIP 102891] gi|260937679|gb|EEX93667.1| nfed family protein [Vibrio orientalis CIP 102891] Length = 448 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 75/230 (32%), Gaps = 23/230 (10%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISR 62 L++IK L+ + + V I+I G I + + ++I+ ++ Sbjct: 3 LQRIKALLYAF-LILWWPASVVQAEKNNAPNQTVPVISISGAIGPAVGDYVTKQIQLANQ 61 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 + AL++++ +PGG + I + I + Sbjct: 62 QPNVPALMITIDTPGGLVSSLRDINQTILASNIPILCLVHP-------------QGARAA 108 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 +A T ++ + + P L V + P + + + Sbjct: 109 SAGTFILYACHIAAMAPATTLGAATL------VSIGGGGSPNQPQEKPQTPTAMEKKVLN 162 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 DS + RN + + + D + +EAK+ +I+++ E Sbjct: 163 DSIAYIRSLAQLRGRNAEWAE-SAVRDAATLSASEAKEKNVINLIADSPE 211 >gi|253578408|ref|ZP_04855680.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850726|gb|EES78684.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 234 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 63/190 (33%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + ++ ++ I D+ L++ L++ GG AG AI I + + + Sbjct: 65 EHVLPKLAIIEDDEEIEGLLILLNTVGGDVEAGLAIAEMIASLSIPTVSLVLGGGHSIGV 124 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +S + V + T ++ + + V + + + + + + Sbjct: 125 PMAVSADYSFAVPSATMVIHPVRSNGMFIGVAQTYRNMEKIQDRITTFISEHSKASQKRL 184 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + Q V D G + G EA K GLID VGG Sbjct: 185 EELMLDTSQLVKDV-------------------------GTMLEGKEAVKEGLIDEVGGI 219 Query: 231 EEVWQSLYAL 240 +E LY + Sbjct: 220 KEALAKLYEM 229 >gi|89073230|ref|ZP_01159760.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium sp. SKA34] gi|90579278|ref|ZP_01235088.1| ATP-dependent Clp protease proteolytic subunit [Vibrio angustum S14] gi|89050940|gb|EAR56404.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium sp. SKA34] gi|90440111|gb|EAS65292.1| ATP-dependent Clp protease proteolytic subunit [Vibrio angustum S14] Length = 207 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 63/196 (32%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + I ++ Sbjct: 102 STVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQIHAQEILTI-- 159 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L++E P + + Sbjct: 160 ----------------------------KQRLNGLLAEHTGQPLEVVERDTDRDNFMSAE 191 Query: 217 EAKKVGLIDVVGGQEE 232 +A + GL+D V Q + Sbjct: 192 QAVEYGLVDAVLSQRD 207 >gi|239826674|ref|YP_002949298.1| peptidase S14 ClpP [Geobacillus sp. WCH70] gi|239806967|gb|ACS24032.1| peptidase S14 ClpP [Geobacillus sp. WCH70] Length = 245 Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 60/211 (28%), Gaps = 33/211 (15%) Query: 43 IRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I G I + +I +I I ++ + L+V L++ GG AG AI + + Sbjct: 52 IEGHIQLPPQNKATKYEHVIPQIVAIEQNQNIEGLLVILNTVGGDVEAGLAIAEMLASLS 111 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 I + +SC + I T + + + V + L + Sbjct: 112 KPTVSIVLGGGHSIGVPIAVSCDYSFITETATMTIHPVRLTGLVIGVPQTFEYLDKMQER 171 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 V K + D G Sbjct: 172 VVRFVTKHSKITEEKFKELMFSKGNLTRDI-------------------------GTNVV 206 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 G +A K GLID VGG + L L Sbjct: 207 GPDAVKYGLIDEVGGVAQAMNKLRELIELNK 237 >gi|327540247|gb|EGF26836.1| Peptidase S14, ClpP [Rhodopirellula baltica WH47] Length = 205 Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + ++G+I ++ E++ ++ + ++ + + ++SPGGS A AI+ +Q + Sbjct: 33 IVFMQGEIHYANANEIVMKLLYLQSENRRKDIHLYINSPGGSVTATLAIYDTMQMLSCPV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + +A LI A S V L ++ + Sbjct: 93 ATYCVGEACSGAAVLLIGGAKGKRFCLPNSRVMMHQPLGGVSGQVSDIEIQAAEM----- 147 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 ++S ++ +D + Sbjct: 148 -------------------------FRYRDKLNEIISSHCGKSVEQIAKDTDRDFFLDAQ 182 Query: 217 EAKKVGLIDVV 227 +AK+ GL+D + Sbjct: 183 QAKEYGLVDDL 193 >gi|299755201|ref|XP_001828495.2| ATP-dependent Clp protease proteolytic subunit [Coprinopsis cinerea okayama7#130] gi|298411115|gb|EAU93328.2| ATP-dependent Clp protease proteolytic subunit [Coprinopsis cinerea okayama7#130] Length = 254 Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 56/190 (29%), Gaps = 24/190 (12%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D+ ++ ++ + +DS + + ++SPGGS AG AI+ +Q V Sbjct: 72 VIMLHGPIRDTDSTLVVAQLLFLEAEDSTKPIHLYINSPGGSVTAGLAIYDTMQYVSAPI 131 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A + + + I ++ Sbjct: 132 HTYGLGLAASMGSLLLAAGAKGRRHCLPNASIMIHQPSGGASGQATDIAIHAKEILRIRQ 191 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 ++ ++ L T E Sbjct: 192 LLTGIYQRHCAKEGETEAAGLKRFET----------------------ALERDYYMTAQE 229 Query: 218 AKKVGLIDVV 227 A + G++D + Sbjct: 230 ALEFGIVDGI 239 >gi|228992486|ref|ZP_04152413.1| Translocation-enhancing protein tepA [Bacillus pseudomycoides DSM 12442] gi|229002772|ref|ZP_04160674.1| Translocation-enhancing protein tepA [Bacillus mycoides Rock3-17] gi|229008526|ref|ZP_04165954.1| Translocation-enhancing protein tepA [Bacillus mycoides Rock1-4] gi|228752750|gb|EEM02350.1| Translocation-enhancing protein tepA [Bacillus mycoides Rock1-4] gi|228758487|gb|EEM07632.1| Translocation-enhancing protein tepA [Bacillus mycoides Rock3-17] gi|228767120|gb|EEM15756.1| Translocation-enhancing protein tepA [Bacillus pseudomycoides DSM 12442] Length = 249 Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHVIPQIVAIEQNPKIEGLLLLLNTVGGDVEAGLAISEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPVRLTGLVIGVP-----QTFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGIDAVKYGLIDDVGGI 224 Query: 231 EEVWQSLYAL 240 + + L L Sbjct: 225 GDAIRKLNEL 234 >gi|163941483|ref|YP_001646367.1| peptidase S14 ClpP [Bacillus weihenstephanensis KBAB4] gi|229012979|ref|ZP_04170144.1| Translocation-enhancing protein tepA [Bacillus mycoides DSM 2048] gi|229061399|ref|ZP_04198744.1| Translocation-enhancing protein tepA [Bacillus cereus AH603] gi|229134603|ref|ZP_04263413.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-ST196] gi|229168535|ref|ZP_04296258.1| Translocation-enhancing protein tepA [Bacillus cereus AH621] gi|163863680|gb|ABY44739.1| peptidase S14 ClpP [Bacillus weihenstephanensis KBAB4] gi|228614941|gb|EEK72043.1| Translocation-enhancing protein tepA [Bacillus cereus AH621] gi|228648864|gb|EEL04889.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-ST196] gi|228717822|gb|EEL69470.1| Translocation-enhancing protein tepA [Bacillus cereus AH603] gi|228748233|gb|EEL98093.1| Translocation-enhancing protein tepA [Bacillus mycoides DSM 2048] Length = 249 Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 64/196 (32%), Gaps = 25/196 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDGVGGI 224 Query: 231 EEVWQSLYALGVDQSI 246 + L L ++ Sbjct: 225 GSALRKLNELIDERKD 240 >gi|261367425|ref|ZP_05980308.1| Clp protease [Subdoligranulum variabile DSM 15176] gi|282570193|gb|EFB75728.1| Clp protease [Subdoligranulum variabile DSM 15176] Length = 239 Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 55/195 (28%), Gaps = 25/195 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ I D L+V L++ GG AG A+ I V + + Sbjct: 70 EHVIPQLVDIEEDPEIEGLLVILNTVGGDVEAGLALAELIAGVSKPSATLVLGGGHSIGI 129 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 A + ++ P + ++ + Sbjct: 130 PL-AVSARRSFIVPTATMTVHPVRHSGMVLGVPQTLRYFEQMQERIVGFVAGHSG----- 183 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + H LV + G + G +A + GLID +GG Sbjct: 184 ------ITARRFTTLMHNTGELVMD-------------MGTVLDGRQAVEEGLIDELGGL 224 Query: 231 EEVWQSLYALGVDQS 245 + LY + Sbjct: 225 SDALGYLYREIERKK 239 >gi|260587637|ref|ZP_05853550.1| translocation-enhancing protein TepA [Blautia hansenii DSM 20583] gi|260541902|gb|EEX22471.1| translocation-enhancing protein TepA [Blautia hansenii DSM 20583] Length = 256 Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 37/231 (16%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 + H+ ++I G++E + ++ ++ I L++ L++ G Sbjct: 50 EENEKEYHIQLLSIIGEVEGHECLPNNSKTTKYEHVLPKLAMIEDSKETDGLLILLNTVG 109 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G AG AI I + + + +S + IV + T ++ + Sbjct: 110 GDVEAGLAIAEMIASLSKPTVSLVLGGGHSIGVPMAVSADYSYIVPSATMVIHPVRSNGM 169 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + V + + P + + Q V D Sbjct: 170 FIGVMQTYRNMEKIQDRITRFIASHSKMPQKRIEQLMLDTSQLVKDV------------- 216 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 G + G EA K GLID GG + LY L + +K Sbjct: 217 ------------GTMLEGEEAVKEGLIDETGGICQALHKLYELIEKEKAQK 255 >gi|60389653|sp|Q6LNW0|CLPP_PHOPR RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp Length = 199 Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 64/196 (32%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 34 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 93 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + I ++K Sbjct: 94 STVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQIHAKEILTIKH 153 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L+++ P + + Sbjct: 154 ------------------------------RLNSLLAKHTGQPLEVVEGDTDRDNFMSAD 183 Query: 217 EAKKVGLIDVVGGQEE 232 +A + GL+D V Q + Sbjct: 184 QAVEYGLVDSVLTQRD 199 >gi|326791245|ref|YP_004309066.1| peptidase S14 ClpP [Clostridium lentocellum DSM 5427] gi|326542009|gb|ADZ83868.1| peptidase S14 ClpP [Clostridium lentocellum DSM 5427] Length = 279 Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 68/199 (34%), Gaps = 25/199 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ + D +++ L++ GG AG A+ I V KP ++ V A S Sbjct: 106 EHIIPQMVGLCDDPKIKGILIILNTVGGDVEAGLALAELIASV--NKPTVSLVLGGAHSI 163 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G I+ AS+ T+ + V + F ++ Sbjct: 164 GVPIAVASDYSFITPTATMTIHPVRMNGTVIGVQ-----------------QTFEFFDQM 206 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + V + F L+ + D G I G EA +ID +GG Sbjct: 207 QERIVAFVARNSHIEETRFKELMLSVGKLARD------VGTILVGQEAVDEKIIDELGGL 260 Query: 231 EEVWQSLYALGVDQSIRKI 249 E L+ L + ++ Sbjct: 261 TEAMSKLHQLIAESEANEL 279 >gi|169841767|ref|ZP_02874876.1| Protease IV [candidate division TM7 single-cell isolate TM7a] Length = 75 Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 35/75 (46%) Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEA 218 F+ ++ ++ + + +Y F VS+SR I + + G+IW G EA Sbjct: 1 KYSDINDSFAPLSQESRDKITQSMQETYSEFKSRVSKSRKIDENTLENYAQGKIWLGDEA 60 Query: 219 KKVGLIDVVGGQEEV 233 K + L+D + +EV Sbjct: 61 KNINLVDGIASLDEV 75 >gi|325680800|ref|ZP_08160338.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Ruminococcus albus 8] gi|324107580|gb|EGC01858.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Ruminococcus albus 8] Length = 229 Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 60/190 (31%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I + + +D L++ L++ GG AG AI I + + S Sbjct: 56 EHIIPALVAVEQDSDIEGLLIVLNTVGGDVEAGLAIAELIAGMSTPTVSLVVGGGH--SI 113 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G ++ ++ T+ + V + S F ++ Sbjct: 114 GVPLAVCADRSFIVPTATMTIHPVRMSGTVLGVP-----------------QTMSYFYKM 156 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + V + F L+ S G + G EA K GLID GG Sbjct: 157 QERIVSFVCGNSSIKPERFRELMM-STGELMTDI-----GTVLEGDEAVKEGLIDSSGGL 210 Query: 231 EEVWQSLYAL 240 + LY L Sbjct: 211 ADAISCLYGL 220 >gi|310641612|ref|YP_003946370.1| peptidase s14 clpp [Paenibacillus polymyxa SC2] gi|309246562|gb|ADO56129.1| Peptidase S14 ClpP [Paenibacillus polymyxa SC2] Length = 282 Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 25/187 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ ++ L++ L++ GG AG AI I + I S Sbjct: 74 EHIIPQLVAAEQNPRIEGLMILLNTVGGDVEAGLAIAEMIASMSKPTVTIVIGGGH--SI 131 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G I+ +S AE++ + + + + Sbjct: 132 GVPIAVSSTYSYIAESATMTIHPIRMS----------------GLVIGVPQTFEYMEKMQ 175 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 ++ + + + G G +A K GL+D VGG Sbjct: 176 ERVVRFVVSHSRITEERFKELMFKTGELNR-------DIGTAVGGIDAVKYGLMDAVGGI 228 Query: 231 EEVWQSL 237 E + L Sbjct: 229 GEALKQL 235 >gi|73670912|ref|YP_306927.1| nodulation efficiency protein NfeD [Methanosarcina barkeri str. Fusaro] gi|72398074|gb|AAZ72347.1| Nodulation efficiency protein NfeD [Methanosarcina barkeri str. Fusaro] Length = 442 Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 91/276 (32%), Gaps = 40/276 (14%) Query: 11 RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERISRDDSATA 68 + + ++ S S V + + I + + + + IE+ +++ A Sbjct: 16 HLFFILFLCFVLIAVSMPSGDAGPQQKVLVLEVSEAITPASDDIIADAIEKA-ENENFEA 74 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 L++SL++PGG + I AI+ A SAG LI ++I A ++ Sbjct: 75 LVISLNTPGGGLDETQTIISAIENASVPVIGYVPESGKAWSAGTLILMGTDIAAMAPFTV 134 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 +GS + + + VK Sbjct: 135 IGSAQPVQVSIEGTKPITDEKIINALVKF------------------------------S 164 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVW-----QSLYALGV 242 RN + + V++ + EA + G+I+ V + Q + + Sbjct: 165 VATAGKHGRNETFAE-EVITKNKNLDAQEALQTGVIEYVAPSIPNLLTQIDGQEIKGKVL 223 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278 I+++ PP + L + I S L T+ + Sbjct: 224 QTENAGIENYEPPFSLSLLGLISNPIISSLLLTLGI 259 >gi|229086348|ref|ZP_04218525.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-44] gi|228696960|gb|EEL49768.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-44] Length = 249 Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 65/196 (33%), Gaps = 25/196 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHVIPQIVAIEQNPKIEGLLLLLNTVGGDVEAGLAISEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPVRLTGLVIGVP-----QTFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGIDAVKYGLIDDVGGI 224 Query: 231 EEVWQSLYALGVDQSI 246 + + L L ++ Sbjct: 225 GDAIRKLNELIDIRTE 240 >gi|153840620|ref|ZP_01993287.1| type IV pilin biogenesis peptidase, putative [Vibrio parahaemolyticus AQ3810] gi|149745716|gb|EDM56846.1| type IV pilin biogenesis peptidase, putative [Vibrio parahaemolyticus AQ3810] Length = 119 Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 46/118 (38%), Gaps = 7/118 (5%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 F E KA + ++ ++ F + E R P + ++ G W G +AK++GL+D Sbjct: 5 MFGENTDKARDKFKQELEETHVLFKDFIRERR--PSLELEKVATGEHWFGTQAKELGLVD 62 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 + +++ + ++ + K L ++ + L ++ + Sbjct: 63 EISTSDDLVVAACKEKTVLAVHYV-----QKKKLADKLAGVASKVADSVVLKLAERGQ 115 >gi|54309798|ref|YP_130818.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium profundum SS9] gi|46914236|emb|CAG21016.1| putative gi|27363512|ref|NP_759040.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio vulnificus CMCP6] [Photobacterium profundum SS9] Length = 207 Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 64/196 (32%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + I ++K Sbjct: 102 STVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQIHAKEILTIKH 161 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L+++ P + + Sbjct: 162 ------------------------------RLNSLLAKHTGQPLEVVEGDTDRDNFMSAD 191 Query: 217 EAKKVGLIDVVGGQEE 232 +A + GL+D V Q + Sbjct: 192 QAVEYGLVDSVLTQRD 207 >gi|152967459|ref|YP_001363243.1| endopeptidase Clp [Kineococcus radiotolerans SRS30216] gi|151361976|gb|ABS04979.1| Endopeptidase Clp [Kineococcus radiotolerans SRS30216] Length = 235 Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 60/186 (32%), Gaps = 27/186 (14%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++I ++ + D+ +I+ ++SPGGS A AI+ +Q ++ + Sbjct: 72 ASADDIIAQLIVLESQDTERDIIMYINSPGGSFTALTAIYDTMQYIRPDIQTYCMGQAAS 131 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + A A S + D + + ++ Sbjct: 132 AAAVLLGAGAPGKRFALPNSRILIHQPAMAGGDYGQASDLEIQANEILRM---------- 181 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 ++ + H V E + + T EA + GLID V Sbjct: 182 -------RSWLESTLAFHSHRTADQVRE----------DIERDKFLTAREAVEYGLIDEV 224 Query: 228 GGQEEV 233 + Sbjct: 225 LTSRKA 230 >gi|154494952|ref|ZP_02033957.1| hypothetical protein PARMER_03998 [Parabacteroides merdae ATCC 43184] gi|154085502|gb|EDN84547.1| hypothetical protein PARMER_03998 [Parabacteroides merdae ATCC 43184] Length = 460 Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 95/257 (36%), Gaps = 21/257 (8%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL--IERIERISRDDSATALI 70 + L L + V + S + P + +I I+ +I ++ L + A A++ Sbjct: 5 LGLFLAIILVQIAPFISAADTLYPLIYKIDIKKEISNTTRLYLSNGLAEAYAL-GADAVL 63 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + +++ GG A +++ AI + N PV + AASAG LIS A I + + +G Sbjct: 64 IHMNTYGGQVDAADSMRTAI--LYNPIPVYVFIDNNAASAGALISIACKKIYMRKGANIG 121 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 + V+ P + + +S S M++ + Sbjct: 122 AATVV------NPTGEAMPDKYQSYMRSMMRSTAEAHGQDTIVQKNDTLYKWKRDPLIAE 175 Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKI 249 +V E IP + +T EA+K G D + +EV K+ Sbjct: 176 AMVDERVAIP--NLIDTGKVLTFTAQEAQKWGYCDGIAENPDEVITQYLG----YKDYKM 229 Query: 250 KDWNPPKNYWFCDLKNL 266 K + P W DLK Sbjct: 230 KSYIP---SWQDDLKGF 243 >gi|156037438|ref|XP_001586446.1| hypothetical protein SS1G_12432 [Sclerotinia sclerotiorum 1980] gi|154697841|gb|EDN97579.1| hypothetical protein SS1G_12432 [Sclerotinia sclerotiorum 1980 UF-70] Length = 198 Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 22/196 (11%), Positives = 59/196 (30%), Gaps = 31/196 (15%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+++ S ++ ++ + D A+ + ++SPGGS AG AI+ + +K+ Sbjct: 23 IICLNGEVDSSLSAAVVAQLLYLESDAPEKAITLYINSPGGSVTAGLAIYDTMTYIKSPV 82 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L S + + + + Sbjct: 83 STVCVGQAASMGSLLLCGGEPGKRFCLPHSSIMIHQPSG---GYSGQATDIAIHATEILR 139 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216 + + ++ + + + + Sbjct: 140 VRKSLNEIYKRHLTKE-------------------------HSLEEIERMMERDKFLSAQ 174 Query: 217 EAKKVGLIDVVGGQEE 232 EA +G++D + + E Sbjct: 175 EALDMGIVDEILDRRE 190 >gi|298674034|ref|YP_003725784.1| hypothetical protein Metev_0056 [Methanohalobium evestigatum Z-7303] gi|298287022|gb|ADI72988.1| protein of unknown function DUF107 [Methanohalobium evestigatum Z-7303] Length = 434 Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 75/206 (36%), Gaps = 3/206 (1%) Query: 14 MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-SQELIERIERISRDDSATALIVS 72 L +++L S V + I I S +L+ ++ D++ A++++ Sbjct: 9 FLIIISLFFFIVMMSPCAIAQEEKVLVVEISDSITSASDDLVTNAISVAEDENYDAIVLT 68 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGS 131 L++PGG I +I+ A SAG +I +++I A S++GS Sbjct: 69 LNTPGGKLSETFNIIESIESTNVPVIGYVYPEGTKAWSAGTIILISTDIAAMAPFSVIGS 128 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 + ++ V+ + KA + V + +++ ++ Sbjct: 129 AQPVQLTGGGSQPINDSKTINAIVEYTREKARQN-NRNVTAAEEFITKNLNINAETALEY 187 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAE 217 V E + L DG + G + Sbjct: 188 NVIEYTSPSIGDLLSQVDGDVAKGKQ 213 >gi|332981522|ref|YP_004462963.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mahella australiensis 50-1 BON] gi|332699200|gb|AEE96141.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mahella australiensis 50-1 BON] Length = 235 Score = 50.8 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 62/211 (29%), Gaps = 33/211 (15%) Query: 43 IRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I G I + +I ++ + L+V L++ GG AG A+ I + Sbjct: 48 IEGHIVLPPQNKTTKYEHVIPQLVAVEESREVEGLLVVLNTVGGDVEAGLALAEMIATLS 107 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + + +S + IV + T + I + V + Sbjct: 108 KPTVSLVLGGGHSIGVPLAVSTDYSFIVPSATMTIHPIRMSGMIIGVPQTYEYFNKMQDR 167 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 + ++ ++ + D G + Sbjct: 168 ILQFICDHSHITIDKLKEYMLKTGELANDI-------------------------GTVLI 202 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 G EA + GLID +GG + L L ++ Sbjct: 203 GEEATRCGLIDEIGGVSKAIIKLKQLIDERK 233 >gi|268608938|ref|ZP_06142665.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ruminococcus flavefaciens FD-1] Length = 228 Score = 50.8 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 65/199 (32%), Gaps = 25/199 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I + + +D S L++ L++ GG AG AI I +K + S Sbjct: 55 EHIIPALVAVEQDRSVEGLLIILNTVGGDVEAGLAIAELISGMKTPTVSLVVGGGH--SI 112 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G ++ ++ ++ + V + + Sbjct: 113 GVPLAVSAKKSFIVPSASMTIHPVRMNGTVL-----------------------GVPQTL 149 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + V + + + + LVL G + G +A ++GLID G Sbjct: 150 SYFQRMQDRIVRFVVGNSGISEEDFRSLMMNTEELVLDVGSVVEGEKAVELGLIDSCGSL 209 Query: 231 EEVWQSLYALGVDQSIRKI 249 + LY + + R + Sbjct: 210 GDAMDCLYDMIENSDKRYV 228 >gi|323449038|gb|EGB04929.1| hypothetical protein AURANDRAFT_38757 [Aureococcus anophagefferens] Length = 273 Score = 50.8 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 54/176 (30%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 L+ ++ ++ DD + + ++SPGGS AG AI+ +Q V + + A Sbjct: 110 LVAQLLYLANDDPTKDITLYINSPGGSVSAGMAIYDTMQFVPCDVSTVCFGTAASMGAFL 169 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A + S + L ++ I V Sbjct: 170 LGAGAKGKRRSLPNSRIMIHQPLGGAQGQAADIEIQAKEILFV----------------- 212 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GAEAKKVGLIDVV 227 +SE P DK D + EA GLID V Sbjct: 213 -------------RQQLNTFISEYTGQPMDKIEEDCDRDFFMCPEEALSYGLIDEV 255 >gi|303316037|ref|XP_003068023.1| ATP-dependent Clp protease proteolytic subunit, putative [Coccidioides posadasii C735 delta SOWgp] gi|240107699|gb|EER25878.1| ATP-dependent Clp protease proteolytic subunit, putative [Coccidioides posadasii C735 delta SOWgp] gi|320032384|gb|EFW14337.1| ATP-dependent Clp protease [Coccidioides posadasii str. Silveira] Length = 237 Score = 50.8 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 25/195 (12%), Positives = 63/195 (32%), Gaps = 31/195 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++++ S ++ ++ + D+ + + ++SPGGS AG AI+ + +++ Sbjct: 62 IVCLNGEVDETVSASIVAQLLFLEADNPEKQISLYINSPGGSVTAGLAIYDTMTYIQSPV 121 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L S V Y + Sbjct: 122 STICVGQAASMGSLLLCGGEPGKRFCLPHSSVMVHQPSGGYFGQATDIAIHA-------- 173 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 K ++N + + + ++ L + + G Sbjct: 174 ---KEILRVRKQLNEIYRRHLTKD-----------------MSLEEIEKLMERDYFMGAK 213 Query: 217 EAKKVGLIDVVGGQE 231 EA +G++D + + Sbjct: 214 EALDMGIVDGIMDRR 228 >gi|207091881|ref|ZP_03239668.1| signal peptide protease IV [Helicobacter pylori HPKX_438_AG0C1] Length = 115 Score = 50.8 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 47/103 (45%), Gaps = 3/103 (2%) Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 + +Q++V+ Y FV V+++R + ++G++++ +A K+ LID + ++ Sbjct: 10 KEFLQNLVNEQYQMFVNDVAKARKLDAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQ 69 Query: 235 QSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 L L + ++ + F + S ++++ + Sbjct: 70 NRLMELSKVKKAYWLEKSPMER---FIEKATQSATNIITQALG 109 >gi|289551370|ref|YP_003472274.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus lugdunensis HKU09-01] gi|315658877|ref|ZP_07911744.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus lugdunensis M23590] gi|289180901|gb|ADC88146.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus lugdunensis HKU09-01] gi|315496001|gb|EFU84329.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus lugdunensis M23590] Length = 195 Score = 50.8 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 65/196 (33%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + ++ ++ + DS + + ++SPGGS AG AI+ IQ +K Sbjct: 29 IIMLGSAIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + V L ++ Sbjct: 89 QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216 + + R+++E ++ +D T Sbjct: 142 -----------------------HILKTREKLNRILAERTGQSIEQIQKDTDRDNFLTAE 178 Query: 217 EAKKVGLIDVVGGQEE 232 EAK GLID V E+ Sbjct: 179 EAKAYGLIDEVMEPED 194 >gi|69245972|ref|ZP_00603744.1| signal peptide peptidase [Enterococcus faecium DO] gi|68195502|gb|EAN09946.1| signal peptide peptidase [Enterococcus faecium DO] Length = 165 Score = 50.8 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 39/103 (37%), Gaps = 13/103 (12%) Query: 30 HVEDNSPHVARIAIRGQIEDS-------------QELIERIERISRDDSATALIVSLSSP 76 D++ + ++++ G I + +E+++ I D + + + ++SP Sbjct: 53 EEGDSTQKIVKLSVDGTIAAGGSSGLFASEGYNHKNFMEQLKAIEEDPTVKGIFLEVNSP 112 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119 GG Y I + + ++ + V +A ++ Sbjct: 113 GGGVYESAEIAKKLDTIRKEHDIPMYVSMKNMAASGGYYISAQ 155 >gi|229544380|ref|ZP_04433439.1| peptidase S14 ClpP [Bacillus coagulans 36D1] gi|229325519|gb|EEN91195.1| peptidase S14 ClpP [Bacillus coagulans 36D1] Length = 245 Score = 50.4 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 25/201 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ I ++ ++V L++ GG AG AI + + I Sbjct: 66 EHMIPQLVAIEQNPKIEGVLVILNTVGGDVEAGLAISEMLASLSKPTVSI---------- 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + ++ S + + + +L + V ++ Sbjct: 116 ----VLGGGHSIGVPIAVSCSYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 166 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + F L+ N+ D G G EA + GLID VGG Sbjct: 167 QERVIKFVTRHSHVEEEVFKDLMFAKGNLTRDI------GTNIVGQEAVQYGLIDEVGGI 220 Query: 231 EEVWQSLYALGVDQSIRKIKD 251 + L +L K K+ Sbjct: 221 GKALGKLNSLIEKYRDEKGKE 241 >gi|255767379|ref|NP_389561.3| protein export-enhancing factor [Bacillus subtilis subsp. subtilis str. 168] gi|321315446|ref|YP_004207733.1| protein export-enhancing factor [Bacillus subtilis BSn5] gi|238054399|sp|Q99171|TEPA_BACSU RecName: Full=Translocation-enhancing protein TepA gi|225185006|emb|CAB13552.3| protein export-enhancing factor [Bacillus subtilis subsp. subtilis str. 168] gi|291484234|dbj|BAI85309.1| translocation-enhancing protein [Bacillus subtilis subsp. natto BEST195] gi|320021720|gb|ADV96706.1| protein export-enhancing factor [Bacillus subtilis BSn5] Length = 245 Score = 50.4 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 66/198 (33%), Gaps = 25/198 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + I + Sbjct: 68 EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 127 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +SC + I T + + + V + L ++ Sbjct: 128 PIAVSCDYSYIAETATMTIHPVRLTGLVIGVPQTFEYLD-------------------KM 168 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + V+ + + + F L+ N+ D G G +A K GLID GG Sbjct: 169 QERVVKFVTSHSNITEEKFKELMFSKGNLTRDI------GTNVVGKDAVKYGLIDHAGGV 222 Query: 231 EEVWQSLYALGVDQSIRK 248 + L L + + Sbjct: 223 GQAINKLNELIDEARKEE 240 >gi|170086161|ref|XP_001874304.1| predicted protein [Laccaria bicolor S238N-H82] gi|164651856|gb|EDR16096.1| predicted protein [Laccaria bicolor S238N-H82] Length = 243 Score = 50.4 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 54/190 (28%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I DS ++ ++ + +DS + + ++SPGGS AG AI+ +Q V + Sbjct: 70 VIMLHGTIRDSDSTLIVAQLLFLEAEDSTKPIHLYINSPGGSVTAGLAIYDTMQYVSSPI 129 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + + I ++ Sbjct: 130 HTYSLGLAASMGSLLLAAGEKGKRHCLPNASIMIHQPSGGASGQASDIAIHAKEILRIRQ 189 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + L T E Sbjct: 190 VLTGIYQRHCG-----------------------------KDGESQAEALERDYYMTAQE 220 Query: 218 AKKVGLIDVV 227 A + G++D + Sbjct: 221 AMEFGIVDGI 230 >gi|227540618|ref|ZP_03970667.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227239557|gb|EEI89572.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 97 Score = 50.4 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 +WTG +A ++GL+D +G + +S + + K+ + K+ + L Sbjct: 1 MWTGEQAVEIGLVDRIGSIGDAIRSAAKMAKLKD-YKVVKYPSLKDPFSSIL 51 >gi|15614960|ref|NP_243263.1| hypothetical protein BH2397 [Bacillus halodurans C-125] gi|14548276|sp|Q9KA93|TEPA_BACHD RecName: Full=Translocation-enhancing protein TepA gi|10175017|dbj|BAB06116.1| BH2397 [Bacillus halodurans C-125] Length = 256 Score = 50.4 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 66/190 (34%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ ++ L++ L++ GG AG AI + KP +T V S Sbjct: 77 EHIIPQLVAAEQNKKIEGLLIILNTVGGDVEAGLAIAEMVA--TMSKPTVTLVLGGGHSI 134 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G I+ A+N AET+ + V + ++ Sbjct: 135 GVPIAVAANYSFIAETATMTIHPVRLTGLVIGVP-----------------QTFEYLDKM 177 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + V + S F L+ N+ D G G +A GLID VGG Sbjct: 178 QERVVSFVTKHSHISEEKFKELMFSKGNLTRDI------GTNVIGTDAVTYGLIDEVGGI 231 Query: 231 EEVWQSLYAL 240 + Q L L Sbjct: 232 GKAMQKLTEL 241 >gi|323465060|gb|ADX77213.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus pseudintermedius ED99] Length = 195 Score = 50.4 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 67/197 (34%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + ++ ++ + D+ + + ++SPGGS AG AI+ IQ +K Sbjct: 29 IIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + V L ++ Sbjct: 89 QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAK------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216 + + +++SE P +K +D T Sbjct: 142 -----------------------HILRTRERLNKILSERTGQPIEKIEKDTDRDNFLTAQ 178 Query: 217 EAKKVGLIDVVGGQEEV 233 EAK+ GLID V E+ Sbjct: 179 EAKEYGLIDEVMEPEKA 195 >gi|329929297|ref|ZP_08283050.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Paenibacillus sp. HGF5] gi|328936666|gb|EGG33109.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Paenibacillus sp. HGF5] Length = 258 Score = 50.4 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 25/187 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ ++ L++ L++ GG AG AI I + KP +T V S Sbjct: 80 EHMIPQLVAAEQNPRIEGLLIILNTVGGDVEAGLAIAEMIASL--SKPTVTVVIGGGHSI 137 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G I+ A++ + AE++ + + + + Sbjct: 138 GVPIAVAADHSIIAESATMTIHPIRMS----------------GLVIGVPQTFEYMEKMQ 181 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + + + G +G +A K GL++ VGG Sbjct: 182 ERVVRFVTSHSGITEEQFKDLMFKTGELNR-------DIGTAVSGTDAVKYGLMNEVGGI 234 Query: 231 EEVWQSL 237 + L Sbjct: 235 GQALSRL 241 >gi|293115362|ref|ZP_05791142.2| Clp protease [Butyrivibrio crossotus DSM 2876] gi|292810238|gb|EFF69443.1| Clp protease [Butyrivibrio crossotus DSM 2876] Length = 211 Score = 50.4 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 64/209 (30%), Gaps = 36/209 (17%) Query: 41 IAIRGQIED-----------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 + I G+IE E+I R+ I +D ++ +++ GG AG AI Sbjct: 18 VYILGEIEGHDGGGSDKNTKYDEIIPRLVSIENNDDVDGVLFVINTMGGDVSAGLAIAEM 77 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 I + + + ++ + IV + T ++ + + + + Sbjct: 78 IAGLSKPTVSLVIGESHSIGVPIAVAANYSFIVKSATVVIHPVRMTGTILGTRQTYRQFR 137 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + ++ + + + + Sbjct: 138 SIQDRIV-----------RFISEHSRCGEESIEKMMMDTSMMSS--------------DL 172 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 G I G EA + GLID G ++ W L Sbjct: 173 GTILVGEEAVEAGLIDENGSIDKAWNKLK 201 >gi|315656915|ref|ZP_07909802.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492870|gb|EFU82474.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 292 Score = 50.4 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 63/205 (30%), Gaps = 37/205 (18%) Query: 30 HVEDNSPHVARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + + ++ V + I G I + ++ I + + + + L+SPGG A Sbjct: 14 NTDSDADAVRVLHISGTIAEESWFDDDITPSIFAAELNAGSGPVKIWLNSPGGDVVAAAQ 73 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+ + + V + +AASA +I+ A+ + + S++ K L Sbjct: 74 IYNML--IDYPGTVTVNIDGIAASAASVIAMAATKVAMSPVSMLMIHNPATMAVGDKDEL 131 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 + + SV + E + K Sbjct: 132 ARAMNMLDSV------------------------------KESILNAYQEKTGMSRAKLS 161 Query: 206 VLSDGRIWT-GAEAKKVGLIDVVGG 229 L D W A +G D + Sbjct: 162 KLMDAETWMDARAAIDMGFADELLT 186 >gi|261407921|ref|YP_003244162.1| peptidase S14 ClpP [Paenibacillus sp. Y412MC10] gi|261284384|gb|ACX66355.1| peptidase S14 ClpP [Paenibacillus sp. Y412MC10] Length = 258 Score = 50.0 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 25/187 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ ++ L++ L++ GG AG AI I + KP +T V S Sbjct: 80 EHMIPQLVAAEQNPRIEGLLIILNTVGGDVEAGLAIAEMIASL--SKPTVTVVIGGGHSI 137 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G I+ A++ + AE++ + + + + Sbjct: 138 GVPIAVAADHSIIAESATMTIHPIRMS----------------GLVIGVPQTFEYMEKMQ 181 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + + + G +GA+A K GL++ VGG Sbjct: 182 ERVVRFVTSHSGITEEQFKDLMFKTGELNR-------DIGTAVSGADAVKYGLMNEVGGI 234 Query: 231 EEVWQSL 237 + L Sbjct: 235 GQALSRL 241 >gi|295399870|ref|ZP_06809851.1| peptidase S14 ClpP [Geobacillus thermoglucosidasius C56-YS93] gi|312111618|ref|YP_003989934.1| peptidase S14 ClpP [Geobacillus sp. Y4.1MC1] gi|294978273|gb|EFG53870.1| peptidase S14 ClpP [Geobacillus thermoglucosidasius C56-YS93] gi|311216719|gb|ADP75323.1| peptidase S14 ClpP [Geobacillus sp. Y4.1MC1] Length = 243 Score = 50.0 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 60/206 (29%), Gaps = 33/206 (16%) Query: 43 IRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I G I + +I +I I ++ + L+V L++ GG AG AI + + Sbjct: 50 IEGHIQLPPQNKTTKYEHVIPQIVAIEQNQNIEGLLVILNTVGGDVEAGLAIAEMLASLS 109 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 I + +SC + I T + I + V + L + Sbjct: 110 KPTVSIVLGGGHSIGVPIAVSCDYSFITETATMTIHPIRLTGLVIGVPQTFEYLDKMQER 169 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 V K + D G Sbjct: 170 VVRFVTKHSKITEEKFKELMFSKGNLTRDI-------------------------GTNVV 204 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYAL 240 G +A K GLID VGG + L L Sbjct: 205 GPDAVKYGLIDEVGGVSKAMNKLREL 230 >gi|143581|gb|AAA22783.1| ORF X [Bacillus subtilis] Length = 244 Score = 50.0 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 70/198 (35%), Gaps = 25/198 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + KP ++ V S Sbjct: 67 EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASL--SKPTVSIVLGGGHSI 124 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G I+ + + AETS V V + ++ Sbjct: 125 GVPIAVSCDYSYIAETSTVTIHPVRLTGLVIGVP-----------------QTFEYLDKM 167 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + V+ + + + F L+ N+ D G G +A K GLID GG Sbjct: 168 QERVVKFVTSHSNITEEKFKELMFSKGNLTRDI------GTNVVGKDAVKYGLIDHAGGV 221 Query: 231 EEVWQSLYALGVDQSIRK 248 + L L + + Sbjct: 222 GQAINKLNELIDEARKEE 239 >gi|330817608|ref|YP_004361313.1| hypothetical protein bgla_1g27400 [Burkholderia gladioli BSR3] gi|327370001|gb|AEA61357.1| hypothetical protein bgla_1g27400 [Burkholderia gladioli BSR3] Length = 366 Score = 50.0 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 69/192 (35%), Gaps = 39/192 (20%) Query: 41 IAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 I I G I D+++ R++ + SA +++V+++S GG + I+ +++ + Sbjct: 24 IRIYGDIGFWGTDAEQFAARLDEVG--PSAASIVVAVNSMGGDVFDAFTIYNLLRRYPGK 81 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 V +AASA L+ + IV +++ + L +L Sbjct: 82 --TTGRVDGIAASAASLLLMGCSQIVMPSNAMLMIHNPHTLAAGDEGELRRLAD------ 133 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215 ++ S+ + +E D L D W T Sbjct: 134 ------------------------LLGSTSANMLTAYAERSGQTEDTVRELMDAETWLTA 169 Query: 216 AEAKKVGLIDVV 227 A+A ++G D + Sbjct: 170 AQAVELGFCDTI 181 >gi|217959640|ref|YP_002338192.1| prophage LambdaBa02, Clp protease family protein [Bacillus cereus AH187] gi|217067295|gb|ACJ81545.1| prophage LambdaBa02, Clp protease family protein [Bacillus cereus AH187] Length = 251 Score = 50.0 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 77/260 (29%), Gaps = 50/260 (19%) Query: 27 WSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSP 76 + + A + I G+I S ++ + D + + ++SP Sbjct: 9 FFQMKASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDD--IETINLYINSP 66 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GGS + AI +Q+ + + VI+ + + AS ++ S+ I+ S++ Sbjct: 67 GGSVFETMAIIAMLQRHQAK--VISYIDGIGASCASVLPMISDKIIMYANSMMMIHNAWT 124 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 L K I+ + L Sbjct: 125 YASGNANQLRKAADDIERINQ----------------------------SMVQHYLTRAG 156 Query: 197 RNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 + D L D W + EA GL D + + L + +K++ Sbjct: 157 DKLDEDTLKQLLDAETWLSAEEAMNYGLCDEIISENNAAACL-------DEKWMKEYKNV 209 Query: 256 KNYWFCDLKNLSISSLLEDT 275 N+ + +LE Sbjct: 210 PQQLVNAQANIPSNEMLERQ 229 >gi|119177332|ref|XP_001240455.1| ATP-dependent Clp protease proteolytic subunit [Coccidioides immitis RS] Length = 237 Score = 50.0 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 25/195 (12%), Positives = 63/195 (32%), Gaps = 31/195 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++++ S ++ ++ + D+ + + ++SPGGS AG AI+ + +++ Sbjct: 62 IVCLNGEVDETVSASIVAQLLFLEADNPEKQISLYINSPGGSVTAGLAIYDTMTYIQSPV 121 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L S V Y + Sbjct: 122 STICIGQAASMGSLLLCGGEPGKRFCLPHSSVMVHQPSGGYFGQATDIAIHA-------- 173 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 K ++N + + + ++ L + + G Sbjct: 174 ---KEILRVRKQLNEIYRRHLTKD-----------------MSLEEIEKLMERDYFMGAK 213 Query: 217 EAKKVGLIDVVGGQE 231 EA +G++D + + Sbjct: 214 EALDMGIVDGIMDRR 228 >gi|13470920|ref|NP_102489.1| ATP-dependent protease proteolytic subunit ClpP-like protein [Mesorhizobium loti MAFF303099] gi|18202652|sp|Q98M38|CLPP1_RHILO RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; AltName: Full=Endopeptidase Clp 1 gi|14021663|dbj|BAB48275.1| ATP-dependent protease proteolytic subunit ClpP-like protein [Mesorhizobium loti MAFF303099] Length = 201 Score = 50.0 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G+I D + ++ + D+ + + ++SPGG +G AI+ +Q V Sbjct: 33 IIFINGEINDDVSALVCAQLLSLESDNPDKEISLYINSPGGVVTSGFAIYDTMQYVSCPV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L++ +A + + L Sbjct: 93 STVCMGFAASMGSFLLMAGTPGRRIALPNATILLHQPLG--------------------- 131 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + L ++ Y++ L T Sbjct: 132 -------GFQGQASDIQRHA--ERIGKTKQRMAELYAQHCGRSYEEVERTLDRDHFMTAR 182 Query: 217 EAKKVGLIDVV 227 EA+ G++D V Sbjct: 183 EAQTWGIVDHV 193 >gi|317129147|ref|YP_004095429.1| peptidase S14 ClpP [Bacillus cellulosilyticus DSM 2522] gi|315474095|gb|ADU30698.1| peptidase S14 ClpP [Bacillus cellulosilyticus DSM 2522] Length = 248 Score = 50.0 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 75/221 (33%), Gaps = 37/221 (16%) Query: 37 HVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 ++ + I GQIE + +I ++ ++ L++ L++ GG AG Sbjct: 44 NIHMLTIIGQIEGHMQLPPQNKTTKYEHIIPQLVAAEQNPKIEGLLIILNTVGGDVEAGL 103 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 A+ I + KP +T V S G I+ A+N AET+ + V + Sbjct: 104 ALSEMISSL--SKPTVTLVLGGGHSIGVPIAVAANYSFIAETATMTIHPVRLTGLVIGVP 161 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 ++ + + + S F L+ N+ D Sbjct: 162 -----------------QTFEYLDKMQDRVINFVTRHSSISEENFKELMLSKGNLTRDI- 203 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 G G +A GLI+ VGG + + L L Sbjct: 204 -----GTNVIGKDAVSYGLINEVGGIGQAIKKLNELIEQSK 239 >gi|150007180|ref|YP_001301923.1| putative membrane-bound serine protease [Parabacteroides distasonis ATCC 8503] gi|255015205|ref|ZP_05287331.1| putative membrane-bound serine protease [Bacteroides sp. 2_1_7] gi|298377605|ref|ZP_06987557.1| serine protease, ClpP class [Bacteroides sp. 3_1_19] gi|149935604|gb|ABR42301.1| conserved hypothetical protein, putative membrane-bound serine protease [Parabacteroides distasonis ATCC 8503] gi|298265624|gb|EFI07285.1| serine protease, ClpP class [Bacteroides sp. 3_1_19] Length = 459 Score = 50.0 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 100/270 (37%), Gaps = 27/270 (10%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALI 70 ++ L + ++ + I I+ +I+++ + + + +A A++ Sbjct: 4 LLTILTAIVLILAISLQSEAKEKSLIYTIDIKKEIDNTTWIYLHNGLSEAKQL-NADAIL 62 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + +++ GG + +++ AI + + PV + AASAG LIS A I + + +G Sbjct: 63 LHMNTYGGLLESADSMRTAI--LYSPIPVYVFIDNNAASAGALISIACKKIYMRKGANIG 120 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 + V+ Q P + + ++ + + + + Sbjct: 121 AATVVNQTGAALPDKYQSYMRSMIRSTAEAQGKDTLIQNGDTIYKWKRD----------- 169 Query: 191 RLVSESRNIPYDKTLVLSDGR---IWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSI 246 L++E+ L D T EA K G D + ++V Sbjct: 170 PLIAEAMVDDRVIVPNLIDSGKVLTLTSQEALKWGYCDGIAESPDQVITEYIG----CKD 225 Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 +IK + P WF ++K +S +++ + Sbjct: 226 YEIKSYEP---SWFDNVKGFFMSPVIQSLL 252 >gi|166031789|ref|ZP_02234618.1| hypothetical protein DORFOR_01490 [Dorea formicigenerans ATCC 27755] gi|166028242|gb|EDR46999.1| hypothetical protein DORFOR_01490 [Dorea formicigenerans ATCC 27755] Length = 228 Score = 50.0 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 77/231 (33%), Gaps = 37/231 (16%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSL 73 S + +V + I G+IE + L+ + + + L++ L Sbjct: 23 SMKLDSNNRKHNVRLLTIIGEIEGHEAVSGNTKATKYEHLLPMLAEVEDSEEIDGLLILL 82 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 ++ GG AG +I I + + + ++ + IV + T ++ + Sbjct: 83 NTMGGDVEAGLSIAEMIASISKPTVSLVLGGSHSIGGPLAVAADYSFIVPSGTMIIHPVR 142 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + V+ L + + K + + + H + Sbjct: 143 SNGMFIGVQQSLQNMIRTQKRIT-----------------------GFLAAHSHMNEERI 179 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 E P + + G + G +A + GLID VGG + L+ + ++ Sbjct: 180 EELMLNPTELVKDV--GTLLEGEDAVREGLIDEVGGMSHALRKLHQMIDEK 228 >gi|270263570|ref|ZP_06191839.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia odorifera 4Rx13] gi|270042454|gb|EFA15549.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia odorifera 4Rx13] Length = 207 Score = 50.0 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + + + + ++SPGG AG +I+ ++ +K Sbjct: 42 IIFLTGQVEDHMANLIVAQMLFLEAESPEKDIYLYINSPGGVITAGMSIYDTMKFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A S V L Y ++ Sbjct: 102 STICMGQACSMGSFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++E ++ R T Sbjct: 156 ------------------------ILKVKARMNELMAEHTGQTLEQIERDTERDRFMTAE 191 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 192 EAVEYGLVDGILT 204 >gi|164687878|ref|ZP_02211906.1| hypothetical protein CLOBAR_01523 [Clostridium bartlettii DSM 16795] gi|164603153|gb|EDQ96618.1| hypothetical protein CLOBAR_01523 [Clostridium bartlettii DSM 16795] Length = 217 Score = 50.0 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 67/199 (33%), Gaps = 30/199 (15%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + ++ D+ +I ++ + +D + + ++SPGGS AG AI+ +Q VK Sbjct: 46 IIFLGEEVTDASASVVIAQLLFLEAEDPDKDIYLYINSPGGSVTAGFAIYDTMQHVKCDV 105 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L A A S + L ++ + + +++ Sbjct: 106 STICIGLAASFGSFLLAGGAKGKRFALPNSQIMIHQPLIGGNGIQGQATDIKIVAENLLK 165 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + R+++E+ ++ + Sbjct: 166 TK---------------------------ERLNRILAENTGKSIEEIYRDTDRDNFMSAQ 198 Query: 217 EAKKVGLIDVVGGQEEVWQ 235 EA GLID + + + + Sbjct: 199 EALDYGLIDSIITRSDSIK 217 >gi|49479417|ref|YP_037857.1| translocation-enhancing protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|225865776|ref|YP_002751154.1| clp protease [Bacillus cereus 03BB102] gi|228935095|ref|ZP_04097923.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|49330973|gb|AAT61619.1| translocation-enhancing protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|225788341|gb|ACO28558.1| clp protease [Bacillus cereus 03BB102] gi|228824565|gb|EEM70369.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 249 Score = 50.0 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHIIPQIVAIEQNPKIEGLLLVLNTVGGDVEAGLAISEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224 Query: 231 EEVWQSLYAL 240 + L L Sbjct: 225 GNAIRKLNEL 234 >gi|228947517|ref|ZP_04109807.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123310|ref|ZP_04252514.1| Translocation-enhancing protein tepA [Bacillus cereus 95/8201] gi|228660086|gb|EEL15722.1| Translocation-enhancing protein tepA [Bacillus cereus 95/8201] gi|228812037|gb|EEM58368.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 249 Score = 50.0 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHIIPQIVAIEQNPKIEGLLLVLNTVGGDVEAGLAISEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224 Query: 231 EEVWQSLYAL 240 + L L Sbjct: 225 GNAIRKLNEL 234 >gi|182417589|ref|ZP_02948911.1| Clp protease [Clostridium butyricum 5521] gi|237667767|ref|ZP_04527751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378544|gb|EDT76073.1| Clp protease [Clostridium butyricum 5521] gi|237656115|gb|EEP53671.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium butyricum E4 str. BoNT E BL5262] Length = 201 Score = 50.0 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D+ ++ ++ + +D + + ++SPGGS AG AI+ +Q + Sbjct: 29 IIMLSGEVNDASAQLIVAQLLFLDSEDPDKDISLYINSPGGSVTAGMAIYDTMQLINADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A A + + L + ++ + VK Sbjct: 89 STICVGMAASMGAFLLSCGAKGKRYALPNAEIMIHQPLGGFQGQVTDIEIHANRMLKVKE 148 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 K SE+ P + + Sbjct: 149 VLNKTL------------------------------SENTGKPLEVIQRDTERDNFMSAE 178 Query: 217 EAKKVGLIDVV 227 +AK+ GL+D + Sbjct: 179 DAKEYGLVDEI 189 >gi|146295915|ref|YP_001179686.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166201809|sp|A4XHW0|CLPP_CALS8 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|145409491|gb|ABP66495.1| ATP-dependent Clp protease proteolytic subunit ClpP [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 195 Score = 50.0 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 65/191 (34%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I D ++ ++ + +D + + ++SPGGS AG AI+ IQ +K Sbjct: 30 IVILSGEITDDIASLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGFAIYDTIQYIKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A S + + Sbjct: 90 STICVGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPIGGVRGQ---------------- 133 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +++ + + R+++E P + ++ + T Sbjct: 134 --------------ATDIKIHAEWILKIKQRINRILAERTGQPIEVIERDTERDFFMTAE 179 Query: 217 EAKKVGLIDVV 227 EA K G+ID V Sbjct: 180 EALKYGIIDKV 190 >gi|255023331|ref|ZP_05295317.1| exfoliative toxin [Listeria monocytogenes FSL J1-208] Length = 138 Score = 50.0 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 36/82 (43%), Gaps = 14/82 (17%) Query: 31 VEDNSPHVARIAIRGQIEDSQE--------------LIERIERISRDDSATALIVSLSSP 76 E +A +++ G I+D+ + ++++E++ DD +++ ++SP Sbjct: 56 EEGGDDTIAVLSVDGTIQDTGDSGSLLGGGGYDHSFFMQQLEQVRNDDYIQGVLLYVNSP 115 Query: 77 GGSAYAGEAIFRAIQKVKNRKP 98 GG I I +++ + Sbjct: 116 GGGVMESAQIRDKILQIQKERN 137 >gi|319783748|ref|YP_004143224.1| endopeptidase Clp [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169636|gb|ADV13174.1| Endopeptidase Clp [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 201 Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G+I D + ++ + D+ + + ++SPGG +G AI+ +Q + Sbjct: 33 IIFINGEINDDISALVCAQLLSLESDNPDKEISLYINSPGGVVTSGFAIYDTMQYISCPV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L++ ++ + + L Sbjct: 93 STVCMGFAASMGSFLLMAGTPGRRISLPNATILLHQPLG--------------------- 131 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + L ++ Y++ L T Sbjct: 132 -------GFQGQASDIQRHA--ERIGRTKRHMTELYAQHCGRTYEEVERTLDRDHFMTAR 182 Query: 217 EAKKVGLIDVV 227 EA+ G++D V Sbjct: 183 EAQAWGIVDHV 193 >gi|221309558|ref|ZP_03591405.1| TepA [Bacillus subtilis subsp. subtilis str. 168] gi|221318805|ref|ZP_03600099.1| TepA [Bacillus subtilis subsp. subtilis str. JH642] gi|221323077|ref|ZP_03604371.1| TepA [Bacillus subtilis subsp. subtilis str. SMY] Length = 245 Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 69/198 (34%), Gaps = 25/198 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + KP ++ V S Sbjct: 68 EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASL--SKPTVSIVLGGGHSI 125 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G I+ + + AET V V + ++ Sbjct: 126 GVPIAVSCDYSYIAETGTVTIHPVRLTGLVIGVP-----------------QTFEYLDKM 168 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + V+ + + + F L+ N+ D G G +A K GLID GG Sbjct: 169 QERVVKFVTSHSNITEEKFKELMFSKGNLTRDI------GTNVVGKDAVKYGLIDHAGGV 222 Query: 231 EEVWQSLYALGVDQSIRK 248 + L L + + Sbjct: 223 GQAINKLNELIDEARKEE 240 >gi|42782881|ref|NP_980128.1| hypothetical protein BCE_3831 [Bacillus cereus ATCC 10987] gi|42738808|gb|AAS42736.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gi|324327690|gb|ADY22950.1| hypothetical protein YBT020_18610 [Bacillus thuringiensis serovar finitimus YBT-020] Length = 249 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHIIPQIVAIEQNPKIEGLLLVLNTVGGDVEAGLAISEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224 Query: 231 EEVWQSLYAL 240 + L L Sbjct: 225 GNAIRKLNEL 234 >gi|52141692|ref|YP_085137.1| translocation-enhancing protein [Bacillus cereus E33L] gi|118479016|ref|YP_896167.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus thuringiensis str. Al Hakam] gi|196034190|ref|ZP_03101600.1| clp protease [Bacillus cereus W] gi|196038350|ref|ZP_03105659.1| clp protease [Bacillus cereus NVH0597-99] gi|196044682|ref|ZP_03111917.1| clp protease [Bacillus cereus 03BB108] gi|206978174|ref|ZP_03239055.1| clp protease [Bacillus cereus H3081.97] gi|217961217|ref|YP_002339785.1| clp protease [Bacillus cereus AH187] gi|218904924|ref|YP_002452758.1| clp protease [Bacillus cereus AH820] gi|222097242|ref|YP_002531299.1| translocation-enhancing protein [Bacillus cereus Q1] gi|228916434|ref|ZP_04080001.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928846|ref|ZP_04091878.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229092838|ref|ZP_04223972.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-42] gi|229140438|ref|ZP_04268993.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-ST26] gi|229186034|ref|ZP_04313204.1| Translocation-enhancing protein tepA [Bacillus cereus BGSC 6E1] gi|229197907|ref|ZP_04324623.1| Translocation-enhancing protein tepA [Bacillus cereus m1293] gi|301055286|ref|YP_003793497.1| peptidase S14 ClpP [Bacillus anthracis CI] gi|51975161|gb|AAU16711.1| translocation-enhancing protein [Bacillus cereus E33L] gi|118418241|gb|ABK86660.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus thuringiensis str. Al Hakam] gi|195993264|gb|EDX57222.1| clp protease [Bacillus cereus W] gi|196024717|gb|EDX63389.1| clp protease [Bacillus cereus 03BB108] gi|196030758|gb|EDX69356.1| clp protease [Bacillus cereus NVH0597-99] gi|206743591|gb|EDZ55017.1| clp protease [Bacillus cereus H3081.97] gi|217066012|gb|ACJ80262.1| clp protease [Bacillus cereus AH187] gi|218538614|gb|ACK91012.1| clp protease [Bacillus cereus AH820] gi|221241300|gb|ACM14010.1| translocation-enhancing protein [Bacillus cereus Q1] gi|228585625|gb|EEK43727.1| Translocation-enhancing protein tepA [Bacillus cereus m1293] gi|228597453|gb|EEK55103.1| Translocation-enhancing protein tepA [Bacillus cereus BGSC 6E1] gi|228642999|gb|EEK99275.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-ST26] gi|228690460|gb|EEL44243.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-42] gi|228830653|gb|EEM76258.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843237|gb|EEM88318.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300377455|gb|ADK06359.1| peptidase S14 ClpP [Bacillus cereus biovar anthracis str. CI] Length = 249 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHIIPQIVAIEQNPKIEGLLLVLNTVGGDVEAGLAISEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224 Query: 231 EEVWQSLYAL 240 + L L Sbjct: 225 GNAIRKLNEL 234 >gi|296807623|ref|XP_002844228.1| ATP-dependent Clp protease proteolytic subunit [Arthroderma otae CBS 113480] gi|238843711|gb|EEQ33373.1| ATP-dependent Clp protease proteolytic subunit [Arthroderma otae CBS 113480] Length = 238 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 24/195 (12%), Positives = 66/195 (33%), Gaps = 30/195 (15%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++++S ++ ++ + D+ + + ++SPGGS AG AI+ + +++ Sbjct: 62 IVCLNGEVDESLSAAIVAQLLFLEADNPEKPIQLYINSPGGSVTAGLAIYDTMTYIQSPV 121 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + S + Y + Sbjct: 122 STICVGQAASMGSLLLCGGEAGKRYCLPHSSIMIHQPSGGYFGQATDIAIHA-------- 173 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 K ++N + + + + ++ L + + G Sbjct: 174 ---KEILRVRHQLNQIYKRHL----------------TGKEMTLEEIEKLMERDYFMGAK 214 Query: 217 EAKKVGLIDVVGGQE 231 EA ++G++D + + Sbjct: 215 EALEMGIVDSILDRR 229 >gi|221313882|ref|ZP_03595687.1| TepA [Bacillus subtilis subsp. subtilis str. NCIB 3610] Length = 245 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 63/198 (31%), Gaps = 25/198 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + I Sbjct: 68 EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSI---------- 117 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + ++ + + V +L + V ++ Sbjct: 118 ----VLGGGHSIGVPIAVSCDYSYIAETATVTIHPVRLTGLVIGVP-----QTFEYLDKM 168 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + V+ + + + F L+ N+ D G G +A K GLID GG Sbjct: 169 QERVVKFVTSHSNITEEKFKELMFSKGNLTRDI------GTNVVGKDAVKYGLIDHAGGV 222 Query: 231 EEVWQSLYALGVDQSIRK 248 + L L + + Sbjct: 223 GQAINKLNELIDEARKEE 240 >gi|152976162|ref|YP_001375679.1| peptidase S14 ClpP [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024914|gb|ABS22684.1| peptidase S14 ClpP [Bacillus cytotoxicus NVH 391-98] Length = 250 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 64/190 (33%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSYIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224 Query: 231 EEVWQSLYAL 240 + Q L AL Sbjct: 225 GDAIQKLNAL 234 >gi|147677625|ref|YP_001211840.1| protease subunit of ATP-dependent Clp proteases [Pelotomaculum thermopropionicum SI] gi|146273722|dbj|BAF59471.1| protease subunit of ATP-dependent Clp proteases [Pelotomaculum thermopropionicum SI] Length = 286 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 56/198 (28%), Gaps = 25/198 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ + + +++ L++ GG AG AI I + + + Sbjct: 102 EHVIPQLVALEQAPEVEGILIVLNTVGGDVEAGLAIAEVIASISKPTVSVVLGGGHSIGV 161 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + I A + + I + V + L V Sbjct: 162 PIAVGAQYSFIAATASMTIHPIRLNGLVIGVPQTYEYLDKMQDRVVR------------- 208 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 R + G + G EA +VGLID VGG Sbjct: 209 -------FVVEHSKISEEKFRELMFRTGELARDI-----GTVLIGREAVEVGLIDAVGGV 256 Query: 231 EEVWQSLYALGVDQSIRK 248 E L + Q + Sbjct: 257 GEAVARLKNMIEGQKKER 274 >gi|158520037|ref|YP_001527907.1| hypothetical protein Dole_0020 [Desulfococcus oleovorans Hxd3] gi|158508863|gb|ABW65830.1| protein of unknown function DUF107 [Desulfococcus oleovorans Hxd3] Length = 488 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 37/297 (12%), Positives = 85/297 (28%), Gaps = 24/297 (8%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRD---D 64 +K +++ L+ + ++ V + + G + + ++R D Sbjct: 1 MKRLFLIFCLLVSGFFLVAPGPVSAGDAHTVYVVKVAGDVAPG--MAAYLKRALDDIPEA 58 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 +++ L + GG + I I ++ I V A SAG LI+ A N +V Sbjct: 59 PHQTIVLDLDTFGGRVDSALMIVDLITAADSKGKTIAFVSRKAISAGALIALACNELVMK 118 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 + +G + L + S K + + + V +V Sbjct: 119 PGTTIGDCAPIMVGSQGPEMLGEKFQSPLRAKFRALAKKNGYPEALAESMVTADMEVFRV 178 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV----------- 233 ++ + Y++ + + G + +++ Sbjct: 179 VTKDGGTFYMDA--LEYEEMDEAQKSAVVSKKTVVAKG---ELLTMDDIEARDLGFSQMT 233 Query: 234 ---WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + A + L L+ +L L + K G Sbjct: 234 VSSVKEMLAAMGIDDTDIVVMEQQWSEGLMRWLGTLAPLLMLIGLGALYTEIKSPGF 290 >gi|89101082|ref|ZP_01173920.1| TepA [Bacillus sp. NRRL B-14911] gi|89084194|gb|EAR63357.1| TepA [Bacillus sp. NRRL B-14911] Length = 256 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 62/198 (31%), Gaps = 25/198 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + LI +I I ++ L+V L++ GG AG AI + + I Sbjct: 79 EHLIPQIVAIEQNPKIEGLLVILNTVGGDVEAGLAISEMLASLSKPTVSI---------- 128 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + ++ + + + +L + V ++ Sbjct: 129 ----VLGGGHSIGVPIAVSCDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 179 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + + S F L+ N+ D G GA+A GLID VGG Sbjct: 180 QDRVINFVTGHSKVSEQQFKDLMFAKGNLTRDI------GTNVVGADAVSYGLIDAVGGV 233 Query: 231 EEVWQSLYALGVDQSIRK 248 + L L ++ Sbjct: 234 GPALKKLNELIDLNKGKE 251 >gi|326482374|gb|EGE06384.1| ATP-dependent Clp protease proteolytic subunit [Trichophyton equinum CBS 127.97] Length = 223 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 25/195 (12%), Positives = 66/195 (33%), Gaps = 30/195 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++++ S ++ ++ + D+ + + ++SPGGS AG AI+ + +++ Sbjct: 46 IVCLNGEVDETLSAAIVAQLLFLEADNPEKPIQLYINSPGGSVTAGLAIYDTMTYIQSPV 105 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + S V Y + Sbjct: 106 STICVGQAASMGSLLLCGGEAGKRYCLPHSSVMIHQPSGGYFGQATDIAIHA-------- 157 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 K ++N + + + + ++ L + + G Sbjct: 158 ---KEILRVRHQLNQIYKRHL----------------TGKEMTLEEIEKLMERDYFMGAK 198 Query: 217 EAKKVGLIDVVGGQE 231 EA ++G++D + + Sbjct: 199 EALEMGIVDSILDRR 213 >gi|327292805|ref|XP_003231100.1| ATP-dependent Clp protease [Trichophyton rubrum CBS 118892] gi|326466730|gb|EGD92183.1| ATP-dependent Clp protease [Trichophyton rubrum CBS 118892] Length = 223 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 25/195 (12%), Positives = 66/195 (33%), Gaps = 30/195 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++++ S ++ ++ + D+ + + ++SPGGS AG AI+ + +++ Sbjct: 46 IVCLNGEVDETLSAAIVAQLLFLEADNPEKPIQLYINSPGGSVTAGLAIYDTMTYIQSPV 105 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + S V Y + Sbjct: 106 STICVGQAASMGSLLLCGGEAGKRYCLPHSSVMIHQPSGGYFGQATDIAIHA-------- 157 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 K ++N + + + + ++ L + + G Sbjct: 158 ---KEILRVRHQLNQIYKRHL----------------TGKEMTLEEIEKLMERDYFMGAK 198 Query: 217 EAKKVGLIDVVGGQE 231 EA ++G++D + + Sbjct: 199 EALEMGIVDSILDRR 213 >gi|325092382|gb|EGC45692.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces capsulatus H88] Length = 229 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 23/195 (11%), Positives = 62/195 (31%), Gaps = 31/195 (15%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++++S ++ ++ + D+ + + ++SPGGS AG A++ + + Sbjct: 47 IVCLNGEVDESLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISAPV 106 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L S V Y Sbjct: 107 STICVGQAASMGSLLLCGGHPGKRYCLPHSSVMVHQPSGGYFGQA--------------- 151 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 A+ + + + + ++ + D+ + + G Sbjct: 152 -------------TDIAIHAKEILRVRRQLNEIYKMHLTKEMSLDEIEKWMERDYFMGAR 198 Query: 217 EAKKVGLIDVVGGQE 231 EA ++G++D + + Sbjct: 199 EALEMGIVDEILDRR 213 >gi|294500881|ref|YP_003564581.1| translocation-enhancing protein TepA [Bacillus megaterium QM B1551] gi|295706227|ref|YP_003599302.1| translocation-enhancing protein TepA [Bacillus megaterium DSM 319] gi|294350818|gb|ADE71147.1| translocation-enhancing protein TepA [Bacillus megaterium QM B1551] gi|294803886|gb|ADF40952.1| translocation-enhancing protein TepA [Bacillus megaterium DSM 319] Length = 250 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 64/190 (33%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI I + I + Sbjct: 73 EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMIASLSKPSVSIVLGGGHSIGV 132 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +S + I T + I + V + L ++ Sbjct: 133 PIAVSTDYSYIAGTATMTIHPIRLTGLVIGVPQTFEYLD-------------------KM 173 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + +++ S F L+ N+ D G G +A GLI+ VGG Sbjct: 174 QERVINFVREHSHISEEKFKELMFSKGNLTRDI------GTNVVGGDAVSYGLINEVGGV 227 Query: 231 EEVWQSLYAL 240 + + L L Sbjct: 228 AQAIKKLNEL 237 >gi|240281120|gb|EER44623.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces capsulatus H143] Length = 229 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 23/195 (11%), Positives = 62/195 (31%), Gaps = 31/195 (15%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++++S ++ ++ + D+ + + ++SPGGS AG A++ + + Sbjct: 47 IVCLNGEVDESLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISAPV 106 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L S V Y Sbjct: 107 STICVGQAASMGSLLLCGGHPGKRYCLPHSSVMVHQPSGGYFGQA--------------- 151 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 A+ + + + + ++ + D+ + + G Sbjct: 152 -------------TDIAIHAKEILRVRRQLNEIYKMHLTKEMSLDEIEKWMERDYFMGAR 198 Query: 217 EAKKVGLIDVVGGQE 231 EA ++G++D + + Sbjct: 199 EALEMGIVDEILDRR 213 >gi|225562415|gb|EEH10694.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces capsulatus G186AR] Length = 229 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 23/195 (11%), Positives = 62/195 (31%), Gaps = 31/195 (15%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++++S ++ ++ + D+ + + ++SPGGS AG A++ + + Sbjct: 47 IVCLNGEVDESLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISAPV 106 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L S V Y Sbjct: 107 STICVGQAASMGSLLLCGGHPGKRYCLPHSSVMVHQPSGGYFGQA--------------- 151 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 A+ + + + + ++ + D+ + + G Sbjct: 152 -------------TDIAIHAKEILRVRRQLNEIYKMHLTKEMSLDEIEKWMERDYFMGAR 198 Query: 217 EAKKVGLIDVVGGQE 231 EA ++G++D + + Sbjct: 199 EALEMGIVDEILDRR 213 >gi|154279296|ref|XP_001540461.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces capsulatus NAm1] gi|150412404|gb|EDN07791.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces capsulatus NAm1] Length = 211 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 23/195 (11%), Positives = 62/195 (31%), Gaps = 31/195 (15%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++++S ++ ++ + D+ + + ++SPGGS AG A++ + + Sbjct: 29 IVCLNGEVDESLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISAPV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L S V Y Sbjct: 89 STICVGQAASMGSLLLCGGHPGKRYCLPHSSVMVHQPSGGYFGQA--------------- 133 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 A+ + + + + ++ + D+ + + G Sbjct: 134 -------------TDIAIHAKEILRVRRQLNEIYKMHLTKEMSLDEIEKWMERDYFMGAR 180 Query: 217 EAKKVGLIDVVGGQE 231 EA ++G++D + + Sbjct: 181 EALEMGIVDEILDRR 195 >gi|313891581|ref|ZP_07825191.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Dialister microaerophilus UPII 345-E] gi|313120040|gb|EFR43222.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Dialister microaerophilus UPII 345-E] Length = 199 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 62/200 (31%), Gaps = 33/200 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQIED + +I ++ + +D + + ++SPGG AG AI+ +Q ++ Sbjct: 29 IIFLDGQIEDHMANVIIAQLLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMQYIRPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L S A A S V L ++ Sbjct: 89 STICIGSCASMAAVLLTSGAKGKRFALPHSNVMIHQPLGGVQGQATEIEIHARE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + ++++ D T Sbjct: 143 ------------------------ILRLRDELNGILAKHTGQSLDVIKKDTERDNFMTAE 178 Query: 217 EAKKVGLIDVVGGQEEVWQS 236 A K GLID + + E+ Sbjct: 179 NALKYGLIDKILTRNELTAK 198 >gi|302673690|ref|XP_003026531.1| hypothetical protein SCHCODRAFT_86223 [Schizophyllum commune H4-8] gi|300100214|gb|EFI91628.1| hypothetical protein SCHCODRAFT_86223 [Schizophyllum commune H4-8] Length = 245 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 23/190 (12%), Positives = 58/190 (30%), Gaps = 24/190 (12%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G I D+ ++ ++ + ++++ + + ++SPGGS AG AI+ +Q V + Sbjct: 69 VVMLYGPIRDTDSALIVSQLLFLEAEETSKPIHLYINSPGGSVTAGLAIYDTMQYVSSPI 128 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + + + + I V+ Sbjct: 129 HTYCIGCAASMGSLLLAAGEKGKRHCLPNASIMIHQPSGGASGQASDVAIHAKEILRVRE 188 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + ++ + + + L T E Sbjct: 189 ALTGIYQKHCAKPDESEAEGLARFE----------------------RALERDYFMTAKE 226 Query: 218 AKKVGLIDVV 227 A G++D + Sbjct: 227 AIDFGIVDGI 236 >gi|256026839|ref|ZP_05440673.1| putative Clp protease [Fusobacterium sp. D11] gi|289764832|ref|ZP_06524210.1| hypothetical protein PSAG_00434 [Fusobacterium sp. D11] gi|289716387|gb|EFD80399.1| hypothetical protein PSAG_00434 [Fusobacterium sp. D11] Length = 370 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 32/246 (13%), Positives = 80/246 (32%), Gaps = 46/246 (18%) Query: 30 HVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGS 79 +++ S ++A I I G I S + ++++ + + + + ++SPGG Sbjct: 11 EIKNLSENIAEIRIYGTITKWAWEEYGEVSSANFAKELQKL---KNISHINLRVNSPGGD 67 Query: 80 AYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 + AI+ ++ N + + +AASA + + ++ +L L Sbjct: 68 VFEASAIYNLLKDYAKVNNIEITGYIDGLAASAASFLVLCATKVIMGTGALYMIHNPLTS 127 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 L K + +VK + + Sbjct: 128 AYGNAEKLKKQIELLDTVK------------------------------EAILDIYCTKS 157 Query: 198 NIPYDKTLVLSDGRIWT-GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256 + ++ +G W +EA + G +D + + +++ + + I + + K Sbjct: 158 KLSREEISEKMNGEKWYRASEALEAGFVDEIVENDNSLENIKNISNELHIENFINQDLLK 217 Query: 257 NYWFCD 262 Sbjct: 218 EKLKEI 223 >gi|229146367|ref|ZP_04274738.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-ST24] gi|296504293|ref|YP_003665993.1| translocation-enhancing protein TepA [Bacillus thuringiensis BMB171] gi|228637000|gb|EEK93459.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-ST24] gi|296325345|gb|ADH08273.1| translocation-enhancing protein tepA [Bacillus thuringiensis BMB171] Length = 249 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 64/197 (32%), Gaps = 25/197 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224 Query: 231 EEVWQSLYALGVDQSIR 247 + L L ++ Sbjct: 225 GNAIRKLNELIDVRAED 241 >gi|90419399|ref|ZP_01227309.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aurantimonas manganoxydans SI85-9A1] gi|90336336|gb|EAS50077.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aurantimonas manganoxydans SI85-9A1] Length = 210 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 33/200 (16%) Query: 40 RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G IEDS + ++ + ++ + + ++SPGG +G AI+ +Q +K Sbjct: 37 VIFITGPIEDSMATLVCAQLLFLEAENPKKEIALYINSPGGVVTSGMAIYDTMQFIKPAV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + AAS G L+ CA + + + I V + + + Sbjct: 97 STLCIGQ--AASMGSLLLCAGHKDMRFA-TPNARIMVHQPSGGFSGQASDIERHAQDIIK 153 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + E Y+ L T Sbjct: 154 LK---------------------------RRLNEVYVEHTGQDYETVERTLDRDHFMTAQ 186 Query: 217 EAKKVGLIDVVGGQEEVWQS 236 EA++ GLID V + ++ Sbjct: 187 EAREFGLIDKVYSSRDALEA 206 >gi|229117283|ref|ZP_04246661.1| Translocation-enhancing protein tepA [Bacillus cereus Rock1-3] gi|228666183|gb|EEL21647.1| Translocation-enhancing protein tepA [Bacillus cereus Rock1-3] Length = 249 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAIAEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224 Query: 231 EEVWQSLYAL 240 Q L L Sbjct: 225 GSALQKLNEL 234 >gi|315042532|ref|XP_003170642.1| ATP-dependent Clp protease proteolytic subunit [Arthroderma gypseum CBS 118893] gi|311344431|gb|EFR03634.1| ATP-dependent Clp protease proteolytic subunit [Arthroderma gypseum CBS 118893] Length = 222 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 66/195 (33%), Gaps = 30/195 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++++ S ++ ++ + D+ + + ++SPGGS AG AI+ + +++ Sbjct: 46 IVCLNGEVDETLSAAIVAQLLFLEADNPEKPIQLYINSPGGSVTAGLAIYDTMTYIQSPV 105 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + S V Y + Sbjct: 106 STICVGQAASMGSLLLCGGEAGKRYCLPHSSVMIHQPSGGYFGQATDIAIHA-------- 157 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 K ++N + + + + D+ L + + G Sbjct: 158 ---KEILRVRHQLNQIYKRHL----------------TGKEMTLDEIEKLMERDYFMGAK 198 Query: 217 EAKKVGLIDVVGGQE 231 EA ++G++D + + Sbjct: 199 EALEMGIVDSILDRR 213 >gi|119492479|ref|XP_001263605.1| Clp protease, putative [Neosartorya fischeri NRRL 181] gi|119411765|gb|EAW21708.1| Clp protease, putative [Neosartorya fischeri NRRL 181] Length = 175 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 23/183 (12%), Positives = 52/183 (28%), Gaps = 27/183 (14%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 S ++ ++ + D+ + + ++SPGGS AG AI+ + + + I + Sbjct: 2 SASIVAQLLFLEADNPQKPIHLYINSPGGSVTAGLAIYDTMTYIASPVSTICVGQAASMG 61 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 + L S + Sbjct: 62 SLLLCGGNPGKRYCLPHSSIMIHQPSG---------------------GYFGQASDIAIH 100 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-AEAKKVGLIDVVG 228 Q H + V + ++ L + + G EA ++G++D + Sbjct: 101 AKEILRVRSQLNKIYQRHLTGKKV-----LSLEEIEKLMERDYFMGAQEALEMGIVDEIL 155 Query: 229 GQE 231 + Sbjct: 156 DRR 158 >gi|171692433|ref|XP_001911141.1| hypothetical protein [Podospora anserina S mat+] gi|170946165|emb|CAP72966.1| unnamed protein product [Podospora anserina S mat+] Length = 254 Score = 49.6 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 63/190 (33%), Gaps = 24/190 (12%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G I+D S ++ ++ + D+ + + ++SPGG +G AI+ + +K+ Sbjct: 66 IVCLNGAIDDTVSASIVAQLLWLESDNPDKPITMYINSPGGEVSSGLAIYDTMTYIKSPV 125 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + +A LI A S + L + I+ ++ Sbjct: 126 STVCVGGAASMAAILLIGGEPGKRYALPHSSIMVHQPLGGTRGQASDILIYANQIQRLRD 185 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 K S ++ MQ + D T E Sbjct: 186 QINKIVQSHINKSFGFEKYDMQAINDMMERDKY----------------------LTAEE 223 Query: 218 AKKVGLIDVV 227 AK G+ID + Sbjct: 224 AKDFGIIDEI 233 >gi|299471219|emb|CBN79074.1| chloroplast clp protease P [Ectocarpus siliculosus] Length = 292 Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 57/178 (32%), Gaps = 31/178 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 L+ ++ ++ DD + + ++SPGGS AG AI+ A+Q V + + A Sbjct: 127 LVAQLLYLANDDPDKDITLYINSPGGSVSAGMAIYDAMQYVPCDVSTVCFGTAASMGAFL 186 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A + + + L ++ I + Sbjct: 187 LGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFI----------------- 229 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGG 229 ++E + P DK D + T EA GLID V Sbjct: 230 -------------RSLLNSYMAEYCDQPADKIQDDCDRDFFMTPEEAMDYGLIDEVVT 274 >gi|255647414|gb|ACU24172.1| unknown [Glycine max] Length = 238 Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G I D ++ ++ + ++S+ + + L+SPGG+ AG AI+ +Q +++ Sbjct: 55 IICINGPISDDTAHVVVAQLLFLESENSSKPINMYLNSPGGAVTAGLAIYDTMQYIRSPV 114 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A + + + Y Sbjct: 115 NTICMGQAASMGSLLLAAGAKGERRSLPNATIMIHQPSGGYSGQ---------------- 158 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K + + + + L ++ + + T Sbjct: 159 --------------AKDIAIHTKHIVRVWDSLNELYAKHTGQSVEVIQTNMDRDNFMTPK 204 Query: 217 EAKKVGLIDVVGG 229 EAK+ GLID V Sbjct: 205 EAKEFGLIDEVID 217 >gi|237738529|ref|ZP_04569010.1| protease IV [Fusobacterium sp. 2_1_31] gi|229424227|gb|EEO39274.1| protease IV [Fusobacterium sp. 2_1_31] Length = 232 Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 60/154 (38%), Gaps = 3/154 (1%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ +E + D +I+ + S E I +K+ K +I + Sbjct: 73 TLKALENLVDDKKIEKIIIDVDEVDLSRVHIEEIKEIFKKLSVDKEIIAIGTTFDEYSYQ 132 Query: 113 LISCASNIIVAA-ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSPFSE 169 + A I + + S + G ++ PY K L LGV++ ++ K E + Sbjct: 133 IALLADKIYMLNTKQSCLYFRGYEYKEPYFKNVLATLGVTVNTLHIGDYKVAGESFSHDK 192 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 + + + + ++ ++ + F+ LV E R I Sbjct: 193 MTEEKKESLMNIKETLFQNFINLVKEKRKIDITN 226 >gi|75764280|ref|ZP_00743823.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218898895|ref|YP_002447306.1| clp protease [Bacillus cereus G9842] gi|228902298|ref|ZP_04066457.1| Translocation-enhancing protein tepA [Bacillus thuringiensis IBL 4222] gi|228909621|ref|ZP_04073444.1| Translocation-enhancing protein tepA [Bacillus thuringiensis IBL 200] gi|228966741|ref|ZP_04127785.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar sotto str. T04001] gi|74488232|gb|EAO51905.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218544679|gb|ACK97073.1| clp protease [Bacillus cereus G9842] gi|228792840|gb|EEM40398.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar sotto str. T04001] gi|228849910|gb|EEM94741.1| Translocation-enhancing protein tepA [Bacillus thuringiensis IBL 200] gi|228857335|gb|EEN01836.1| Translocation-enhancing protein tepA [Bacillus thuringiensis IBL 4222] Length = 249 Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 64/196 (32%), Gaps = 25/196 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224 Query: 231 EEVWQSLYALGVDQSI 246 + L L ++ Sbjct: 225 GNAIRKLNELIDVRAE 240 >gi|312898487|ref|ZP_07757877.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Megasphaera micronuciformis F0359] gi|310620406|gb|EFQ03976.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Megasphaera micronuciformis F0359] Length = 202 Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 58/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D + +I ++ + D+ + + ++SPGG AG AI+ ++ +K Sbjct: 31 IIFLTGAIDDTVANSVIAQLLFLEADNPDKDIHLYINSPGGVVTAGMAIYDTMRYIKPDV 90 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ L + A S V L ++ Sbjct: 91 STICVGSAASMASVLLTAGTKGKRFALPHSQVMIHQPLGGVQGQASDIEIHARE------ 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + +++ P D T Sbjct: 145 ------------------------ILRMRKELNGILATHTGQPVDVIEKDTERDNFMTAE 180 Query: 217 EAKKVGLIDVV 227 EAK GL+D + Sbjct: 181 EAKAYGLVDEI 191 >gi|196019855|ref|XP_002119057.1| hypothetical protein TRIADDRAFT_63023 [Trichoplax adhaerens] gi|190577146|gb|EDV18457.1| hypothetical protein TRIADDRAFT_63023 [Trichoplax adhaerens] Length = 215 Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 7/119 (5%) Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 + + + +Q+ +D + F L+ R P +S G W G++AK++ L+D + Sbjct: 6 KNTEEGRKKVQEELDQIHSEFKNLIKLKR--PSIDIEKISTGEFWLGSKAKELKLVDEIM 63 Query: 229 GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + SLY +++ + F + SI E I + GL Sbjct: 64 TSADYLTSLYQ-----DNKQVYFVKYERKISFLEKLENSIGLSKETVIDVESSRSFLGL 117 >gi|229031427|ref|ZP_04187427.1| Translocation-enhancing protein tepA [Bacillus cereus AH1271] gi|228729716|gb|EEL80696.1| Translocation-enhancing protein tepA [Bacillus cereus AH1271] Length = 249 Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224 Query: 231 EEVWQSLYAL 240 + L L Sbjct: 225 GNAIRKLNEL 234 >gi|229162732|ref|ZP_04290689.1| Translocation-enhancing protein tepA [Bacillus cereus R309803] gi|228620614|gb|EEK77483.1| Translocation-enhancing protein tepA [Bacillus cereus R309803] Length = 249 Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224 Query: 231 EEVWQSLYAL 240 + L L Sbjct: 225 GSALRKLNEL 234 >gi|229191921|ref|ZP_04318891.1| Translocation-enhancing protein tepA [Bacillus cereus ATCC 10876] gi|228591472|gb|EEK49321.1| Translocation-enhancing protein tepA [Bacillus cereus ATCC 10876] Length = 249 Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 64/197 (32%), Gaps = 25/197 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224 Query: 231 EEVWQSLYALGVDQSIR 247 + L L ++ Sbjct: 225 GNAIRKLNELIDVRAED 241 >gi|326475380|gb|EGD99389.1| ATP-dependent Clp protease [Trichophyton tonsurans CBS 112818] Length = 246 Score = 49.2 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 25/195 (12%), Positives = 66/195 (33%), Gaps = 30/195 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++++ S ++ ++ + D+ + + ++SPGGS AG AI+ + +++ Sbjct: 69 IVCLNGEVDETLSAAIVAQLLFLEADNPEKPIQLYINSPGGSVTAGLAIYDTMTYIQSPV 128 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + S V Y + Sbjct: 129 STICVGQAASMGSLLLCGGEAGKRYCLPHSSVMIHQPSGGYFGQATDIAIHA-------- 180 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 K ++N + + + + ++ L + + G Sbjct: 181 ---KEILRVRHQLNQIYKRHL----------------TGKEMTLEEIEKLMERDYFMGAK 221 Query: 217 EAKKVGLIDVVGGQE 231 EA ++G++D + + Sbjct: 222 EALEMGIVDSILDRR 236 >gi|225423749|ref|XP_002277069.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 241 Score = 49.2 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ + + + L+SPGG+ AG AI+ +Q +++ Sbjct: 56 IVCINGPISDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGAVSAGLAIYDTMQYIRSPV 115 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + + Y + I V Sbjct: 116 NTICLGQAASMGSLLLAAGAKGERRALPNATIMIHQPSGGYSGQAKDMTIHTKQIIRV-- 173 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + L ++ D D + T Sbjct: 174 ----------------------------WDSLNALYAKHTGQSLDIIQKNMDRDYFMTPE 205 Query: 217 EAKKVGLIDVVGG 229 EAK+ G+ID V Sbjct: 206 EAKEFGIIDEVID 218 >gi|30021886|ref|NP_833517.1| translocation-enhancing protein tepA [Bacillus cereus ATCC 14579] gi|218234620|ref|YP_002368598.1| clp protease [Bacillus cereus B4264] gi|228922511|ref|ZP_04085812.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954073|ref|ZP_04116102.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960002|ref|ZP_04121667.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047482|ref|ZP_04193072.1| Translocation-enhancing protein tepA [Bacillus cereus AH676] gi|229071295|ref|ZP_04204518.1| Translocation-enhancing protein tepA [Bacillus cereus F65185] gi|229081051|ref|ZP_04213562.1| Translocation-enhancing protein tepA [Bacillus cereus Rock4-2] gi|229111268|ref|ZP_04240821.1| Translocation-enhancing protein tepA [Bacillus cereus Rock1-15] gi|229129072|ref|ZP_04258045.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-Cer4] gi|229151996|ref|ZP_04280192.1| Translocation-enhancing protein tepA [Bacillus cereus m1550] gi|229180074|ref|ZP_04307418.1| Translocation-enhancing protein tepA [Bacillus cereus 172560W] gi|29897442|gb|AAP10718.1| Translocation-enhancing protein tepA [Bacillus cereus ATCC 14579] gi|218162577|gb|ACK62569.1| clp protease [Bacillus cereus B4264] gi|228603283|gb|EEK60760.1| Translocation-enhancing protein tepA [Bacillus cereus 172560W] gi|228631551|gb|EEK88184.1| Translocation-enhancing protein tepA [Bacillus cereus m1550] gi|228654309|gb|EEL10174.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-Cer4] gi|228672044|gb|EEL27335.1| Translocation-enhancing protein tepA [Bacillus cereus Rock1-15] gi|228702255|gb|EEL54730.1| Translocation-enhancing protein tepA [Bacillus cereus Rock4-2] gi|228711749|gb|EEL63701.1| Translocation-enhancing protein tepA [Bacillus cereus F65185] gi|228723729|gb|EEL75084.1| Translocation-enhancing protein tepA [Bacillus cereus AH676] gi|228799745|gb|EEM46697.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805639|gb|EEM52229.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228837106|gb|EEM82446.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 249 Score = 49.2 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 64/197 (32%), Gaps = 25/197 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVPQ-----TFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224 Query: 231 EEVWQSLYALGVDQSIR 247 + L L ++ Sbjct: 225 GNAIRKLNELIDVRAED 241 >gi|167464750|ref|ZP_02329839.1| peptidase S14 ClpP [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382330|ref|ZP_08056237.1| protein export-enhancing factor-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153683|gb|EFX46058.1| protein export-enhancing factor-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 248 Score = 49.2 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 24/196 (12%), Positives = 55/196 (28%), Gaps = 25/196 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ + ++ L++ GG AG AI I + I + Sbjct: 70 EHIIPQLVAAEQSTKIEGVLFILNTVGGDVEAGLAIAEMIATMSKPTVSIV----LGGGH 125 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + A + + + + + + + Sbjct: 126 SIGVPIAVSTDFT--------------FIAETATMTIHPIRLTGLVIGVPQTFEYLDKMQ 171 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + + + + + G GA+A + GLI+ VGG Sbjct: 172 DRVVRFVTKHSNVTEEQFKHLMFKTGELTR-------DIGTTVIGADAVRYGLINAVGGI 224 Query: 231 EEVWQSLYALGVDQSI 246 E + LY ++ Sbjct: 225 GEAMRELYRRIDEKKA 240 >gi|31340017|sp|Q8DG26|CLPP_VIBVU RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|60389705|sp|Q7MMG7|CLPP_VIBVY RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp Length = 200 Score = 49.2 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 34 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 93 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + I ++K+ Sbjct: 94 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKT 153 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K L++E P + + Sbjct: 154 KLNK------------------------------LLAEHTGQPLEVIERDTDRDNFMSAD 183 Query: 217 EAKKVGLIDVVGGQEEV 233 +A + GL+D V Sbjct: 184 QAVEYGLVDAVLTHRSA 200 >gi|114777030|ref|ZP_01452050.1| ATP-dependent Clp protease proteolytic subunit [Mariprofundus ferrooxydans PV-1] gi|114552551|gb|EAU55011.1| ATP-dependent Clp protease proteolytic subunit [Mariprofundus ferrooxydans PV-1] Length = 207 Score = 49.2 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 67/212 (31%), Gaps = 36/212 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + GQ++D +I ++ + + + + ++SPGG +G AI+ +Q ++ Sbjct: 29 IVFLNGQVDDHTANLIIAQLLFLESEGPDKDIYMYINSPGGVVTSGLAIYDTMQYIRCDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L S A + S + L + ++ Sbjct: 89 STLCIGQAASMGAHLLASGAPGKRFSLPNSRIMIHQPLGGFQGQATDIEIHARE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + S + ++++ P +K + T Sbjct: 143 ------------------------ILSLKNRLNEMMAKHTGQPIEKLADDVERDYFLTAD 178 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 +A + GL+D V A G +K Sbjct: 179 QACEYGLVDKVLSS---RAEAVAAGGGNDDKK 207 >gi|27363512|ref|NP_759040.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus CMCP6] gi|37679288|ref|NP_933897.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus YJ016] gi|320156969|ref|YP_004189348.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus MO6-24/O] gi|27359628|gb|AAO08567.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio vulnificus CMCP6] gi|37198031|dbj|BAC93868.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio vulnificus YJ016] gi|319932281|gb|ADV87145.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus MO6-24/O] Length = 208 Score = 49.2 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + I ++K+ Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKT 161 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K L++E P + + Sbjct: 162 KLNK------------------------------LLAEHTGQPLEVIERDTDRDNFMSAD 191 Query: 217 EAKKVGLIDVVGGQEEV 233 +A + GL+D V Sbjct: 192 QAVEYGLVDAVLTHRSA 208 >gi|170706783|ref|ZP_02897241.1| clp protease [Bacillus anthracis str. A0389] gi|170128201|gb|EDS97070.1| clp protease [Bacillus anthracis str. A0389] Length = 249 Score = 49.2 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHIIPQIVAIEQNPKIEGLLIVLNTVGGDVEAGLAISEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224 Query: 231 EEVWQSLYAL 240 + L L Sbjct: 225 GNAIRKLNEL 234 >gi|115351925|ref|YP_773764.1| peptidase S14, ClpP [Burkholderia ambifaria AMMD] gi|115281913|gb|ABI87430.1| peptidase S14, ClpP [Burkholderia ambifaria AMMD] Length = 361 Score = 49.2 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 74/192 (38%), Gaps = 39/192 (20%) Query: 41 IAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 I I +I D+Q + +++ + +A+ ++V+++S GG + AI+ A+++ + Sbjct: 22 IRIYNEIGFWGTDAQTFVTQLDAAAA--NASTIVVAINSMGGDVFDAFAIYNALRRHAGK 79 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 V +AASA LI+ A + IV E +L+ +V Sbjct: 80 VKVRV--DGVAASAASLIAMAGDEIVMPENALLMIHN------------------AHTVT 119 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215 + K ++ ++ + + D+ + D W T Sbjct: 120 AGEAKDLRRIADLLD------------NAGDGILAAYAAKSGQSIDEIRGMMDAETWLTA 167 Query: 216 AEAKKVGLIDVV 227 A+AK+ G D + Sbjct: 168 AQAKEKGFCDTI 179 >gi|330446593|ref|ZP_08310245.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490784|dbj|GAA04742.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 207 Score = 49.2 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 63/196 (32%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + I ++ Sbjct: 102 STVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQIHAQEILTI-- 159 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L++E P + + Sbjct: 160 ----------------------------KQRLNGLLAEHTGQPLEIIERDTDRDNFMSAD 191 Query: 217 EAKKVGLIDVVGGQEE 232 +A + GL+D V + + Sbjct: 192 QAVEYGLVDAVLSKRD 207 >gi|47569067|ref|ZP_00239756.1| translocation-enhancing protein tepA [Bacillus cereus G9241] gi|228986940|ref|ZP_04147066.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229157374|ref|ZP_04285452.1| Translocation-enhancing protein tepA [Bacillus cereus ATCC 4342] gi|47554229|gb|EAL12591.1| translocation-enhancing protein tepA [Bacillus cereus G9241] gi|228626101|gb|EEK82850.1| Translocation-enhancing protein tepA [Bacillus cereus ATCC 4342] gi|228772718|gb|EEM21158.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 249 Score = 49.2 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224 Query: 231 EEVWQSLYAL 240 + L L Sbjct: 225 GNAIRKLNEL 234 >gi|229174462|ref|ZP_04301994.1| Translocation-enhancing protein tepA [Bacillus cereus MM3] gi|228609022|gb|EEK66312.1| Translocation-enhancing protein tepA [Bacillus cereus MM3] Length = 249 Score = 49.2 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224 Query: 231 EEVWQSLYAL 240 + L L Sbjct: 225 GNAIRKLNEL 234 >gi|206975220|ref|ZP_03236134.1| prophage LambdaBa02, Clp protease family protein [Bacillus cereus H3081.97] gi|206746641|gb|EDZ58034.1| prophage LambdaBa02, Clp protease family protein [Bacillus cereus H3081.97] Length = 251 Score = 49.2 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 76/260 (29%), Gaps = 50/260 (19%) Query: 27 WSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSP 76 + + A + I G+I S ++ + D + + ++SP Sbjct: 9 FFQMKASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDD--IETINLYINSP 66 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GGS + AI +Q+ + + VI+ + + AS ++ S+ I+ S++ Sbjct: 67 GGSVFETMAIIAMLQRHQAK--VISYIDGIGASCASVLPMISDKIIMYANSMMMIHNAWT 124 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 L K I+ + L Sbjct: 125 YASGNANQLRKAADDIERINQ----------------------------SMVQHYLTRAG 156 Query: 197 RNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 + D L D W + EA GL D + L + +K++ Sbjct: 157 DKLDEDTLKQLLDAETWLSAEEAMNYGLCDEIISANNAAACL-------DEKWMKEYKNV 209 Query: 256 KNYWFCDLKNLSISSLLEDT 275 N+ + +LE Sbjct: 210 PQQLVNAQANIPSNEMLERQ 229 >gi|88800033|ref|ZP_01115603.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Reinekea sp. MED297] gi|88777159|gb|EAR08364.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Reinekea sp. MED297] Length = 209 Score = 49.2 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED ++ ++ + ++ + + ++SPGGS AG AI+ +Q +K Sbjct: 45 VIFLVGQVEDYMANLVVAQLLFLESENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKPDV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S + L Y ++ Sbjct: 105 STMCIGQAASMGALLLTGGAKGKRYCLPNSRMMIHQPLGGYQGQATDIEIHARE------ 158 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + +++ P + T Sbjct: 159 ------------------------ILEMKRRLNEIMAHHTGRPLEDVERDTDRDNFMTAE 194 Query: 217 EAKKVGLIDVVGG 229 +A GL+D V Sbjct: 195 QAVDYGLVDQVIT 207 >gi|228943547|ref|ZP_04105982.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973794|ref|ZP_04134371.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980349|ref|ZP_04140660.1| Translocation-enhancing protein tepA [Bacillus thuringiensis Bt407] gi|228779454|gb|EEM27710.1| Translocation-enhancing protein tepA [Bacillus thuringiensis Bt407] gi|228785946|gb|EEM33948.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816134|gb|EEM62324.1| Translocation-enhancing protein tepA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941508|gb|AEA17404.1| translocation-enhancing protein tepA [Bacillus thuringiensis serovar chinensis CT-43] Length = 249 Score = 49.2 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 64/196 (32%), Gaps = 25/196 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVPQ-----TFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224 Query: 231 EEVWQSLYALGVDQSI 246 + L L ++ Sbjct: 225 GNAIRKLNELIDVRAE 240 >gi|167945133|ref|ZP_02532207.1| peptidase, S49 (protease IV) family protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 159 Score = 49.2 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 13/105 (12%) Query: 36 PHVARIAIRGQ----------IEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYA 82 VA I + G I + L + + +++ + SPGG Sbjct: 54 DGVAIIPVVGPLFRYANLFTAISGASSYEILAKDFTTALDNPEVKGIVLDIDSPGGEVNG 113 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 I + + KP+I AAS Y I+ A + +V +ETS Sbjct: 114 CAEFANMIFEARGTKPIIAYTSGDAASGAYWIASACDEVVVSETS 158 >gi|157369338|ref|YP_001477327.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia proteamaculans 568] gi|157321102|gb|ABV40199.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia proteamaculans 568] Length = 207 Score = 49.2 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + + + + ++SPGG AG +I+ ++ +K Sbjct: 42 IIFLTGQVEDHMANLIVAQMLFLEAESPEKDIFLYINSPGGVITAGMSIYDTMKFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A S V L Y ++ Sbjct: 102 STICMGQACSMGSFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++E ++ R T Sbjct: 156 ------------------------ILKVKARMNELMAEHTGQTLEQIERDTERDRFMTAE 191 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 192 EAVEYGLVDGILT 204 >gi|329121861|ref|ZP_08250476.1| ATP-dependent Clp protease, protease subunit [Dialister micraerophilus DSM 19965] gi|327467799|gb|EGF13291.1| ATP-dependent Clp protease, protease subunit [Dialister micraerophilus DSM 19965] Length = 205 Score = 49.2 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 63/200 (31%), Gaps = 33/200 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQIED + +I ++ + +D + + ++SPGG AG AI+ +Q ++ Sbjct: 35 IIFLDGQIEDHMANVIIAQLLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMQYIRPDV 94 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L S A A S V L ++ Sbjct: 95 STICIGSCASMAAVLLTSGAKGKRFALPHSNVMIHQPLGGVQGQATEIEIHARE------ 148 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + ++++ P D T Sbjct: 149 ------------------------ILRLRDELNGILAKHTGQPLDVIKKDTERDNFMTAE 184 Query: 217 EAKKVGLIDVVGGQEEVWQS 236 A K GLID + + E+ Sbjct: 185 NALKYGLIDKILTRNELTAK 204 >gi|293189652|ref|ZP_06608369.1| Clp protease [Actinomyces odontolyticus F0309] gi|292821390|gb|EFF80332.1| Clp protease [Actinomyces odontolyticus F0309] Length = 216 Score = 49.2 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 61/198 (30%), Gaps = 33/198 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D + ++ ++ +D + + ++SPGGS AG AI+ +Q +K Sbjct: 43 IIWLGGEVRDDNANVICAQLLLLAAEDPDRDIYLYINSPGGSVTAGMAIYDTMQYIKPDV 102 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A + V L Sbjct: 103 VTVGMGMAASMGQFLLTAGAPGKRYITPHTRVLLHQPLGGAGG----------------- 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + +++ D++ + + ++ D W T Sbjct: 146 -------------SATEIRINADLILGMKKELASITAARTGKTVEQVEADGDRDHWFTAQ 192 Query: 217 EAKKVGLIDVVGGQEEVW 234 EA + G +D V + Sbjct: 193 EALEYGFVDRVIDSPQEI 210 >gi|212634709|ref|YP_002311234.1| hypothetical protein swp_1887 [Shewanella piezotolerans WP3] gi|212556193|gb|ACJ28647.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 464 Score = 49.2 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 34/243 (13%), Positives = 94/243 (38%), Gaps = 15/243 (6%) Query: 10 TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSAT 67 + +L ++T + S+ + ++++G I + ++L I ++ + Sbjct: 4 WKLALLVILTALLCMGVQSADENTLGTEIPVVSVKGAIGPAVGKQLTAEINAANQQHNVP 63 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAET 126 +I++L +PGG + +I + I + AASAG + A ++ A Sbjct: 64 LIIITLDTPGGLVSSLRSINQTILTSDIPVACLVYPKGARAASAGTYMLYACHVAAMATA 123 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 + +G+ + P S + + + + +P + + + + + Sbjct: 124 TTLGAATPVQMGPSAP--------SPDKINPADKEGDNTPENPSPSAMEKKILNDAIAYI 175 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQS 245 +L RN + + +++ T EA + +ID++ +++ ++L ++ Sbjct: 176 RSLAQL--RGRNQEWAEL-AVTEAATLTATEALALNVIDLLAESPQQLVRNLDGKVIEFG 232 Query: 246 IRK 248 + Sbjct: 233 DVE 235 >gi|85713354|ref|ZP_01044368.1| Protease subunit of ATP-dependent Clp protease [Idiomarina baltica OS145] gi|85692821|gb|EAQ30805.1| Protease subunit of ATP-dependent Clp protease [Idiomarina baltica OS145] Length = 205 Score = 49.2 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 53/176 (30%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + D+ + + ++SPGG AG AI+ ++ +K + + A Sbjct: 53 IVAQLLFLESDNPDKDIYLYINSPGGVVTAGMAIYDTMRFIKPDVSTVCMGQAASMGAFL 112 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L A S V L + + Sbjct: 113 LAGGAQGKRYCLPNSRVMIHQPLGGFQGQASDFE-------------------------- 146 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227 + + R+++E+ Y+K T EA GL+D + Sbjct: 147 ----IHAKQILDLKERLNRMLAENTGQDYEKVARDTDRDHFLTAPEAVDYGLVDGI 198 >gi|258592920|emb|CBE69229.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) [NC10 bacterium 'Dutch sediment'] Length = 205 Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 33/199 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I I+D++ +I ++ + +D + + ++SPGGS A AI+ +Q +K Sbjct: 29 ILFIGTPIDDAESNLIIAQLLFLEAEDPDKDIHLYVNSPGGSVTASLAIYDTMQYIKPAI 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L + A A + + Sbjct: 89 ETICMGQAASGAALLLAAGAKGKRYALPHARIMIHQPYG--------------------- 127 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +++ P ++ SD + + + Sbjct: 128 GAQGQASDIQIQAKEILRMRQELDRI---------IADHTGQPLERIEKDSDRDFFMSPS 178 Query: 217 EAKKVGLIDVVGGQEEVWQ 235 EAK GLID V + Sbjct: 179 EAKDYGLIDEVIYSRDGLA 197 >gi|291233557|ref|XP_002736719.1| PREDICTED: Enoyl-CoA Hydratase family member-like [Saccoglossus kowalevskii] Length = 388 Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 38/275 (13%), Positives = 74/275 (26%), Gaps = 37/275 (13%) Query: 27 WSSHVEDNSPHVARIAIRGQ-------IEDSQELIERIERISRDDSATALIVSLSSPGGS 79 + S VA I + I +E+ + + + D++ +++ S G Sbjct: 106 FQSVQYTVKDKVANITLNRPNRLNAIGIHTPKEIYQSVLLANNDENVKVIVL---SGKGR 162 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A+ + I ++ + A S F Sbjct: 163 AFCSG--YDLIDFAQSERGTFGSQKMPWDPYTDYKVMA-------------SCTEAFMSL 207 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + V +V A + A V R Sbjct: 208 WKSYKPTVCKVHGFAVAGGSDIALCCDMVIMADNAKIGYPPSRVWGCSTPAMWV--YRVG 265 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLI------DVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 P +L G + TG EA +GL+ D + ++ L V+ ++ Sbjct: 266 PEKAKRLLFTGDLITGKEATDMGLVLQSVPEDKL---DDAVDKLVQRMVNVPSNQLFFQK 322 Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 N + LS + L + M + +G+ Sbjct: 323 QVINQAVEQM-GLSSTQRLATFLDGMTRHSPEGVL 356 >gi|225680955|gb|EEH19239.1| ATP-dependent Clp protease proteolytic subunit [Paracoccidioides brasiliensis Pb03] Length = 235 Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 23/195 (11%), Positives = 60/195 (30%), Gaps = 31/195 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++++ S ++ ++ + D+ + + ++SPGGS AG A++ + + Sbjct: 47 IVCLNGEVDETLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISAPV 106 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L S V Y Sbjct: 107 STICVGQAASMGSLLLCGGHPGKRFCLPHSSVMVHQPSGGYFGQA--------------- 151 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 A+ + + + + + D+ + + G Sbjct: 152 -------------TDIAIHAKEILRVRRQLNEIYKRHLKKEMSLDEIEKWMERDYFMGAK 198 Query: 217 EAKKVGLIDVVGGQE 231 EA ++G++D + + Sbjct: 199 EALEMGIVDEILDRR 213 >gi|30263799|ref|NP_846176.1| hypothetical protein BA_3932 [Bacillus anthracis str. Ames] gi|47529224|ref|YP_020573.1| hypothetical protein GBAA_3932 [Bacillus anthracis str. 'Ames Ancestor'] gi|49186646|ref|YP_029898.1| hypothetical protein BAS3647 [Bacillus anthracis str. Sterne] gi|65321124|ref|ZP_00394083.1| COG0740: Protease subunit of ATP-dependent Clp proteases [Bacillus anthracis str. A2012] gi|165872618|ref|ZP_02217249.1| clp protease [Bacillus anthracis str. A0488] gi|167635861|ref|ZP_02394170.1| clp protease [Bacillus anthracis str. A0442] gi|167639876|ref|ZP_02398145.1| clp protease [Bacillus anthracis str. A0193] gi|170687843|ref|ZP_02879057.1| clp protease [Bacillus anthracis str. A0465] gi|177652109|ref|ZP_02934655.1| clp protease [Bacillus anthracis str. A0174] gi|190568387|ref|ZP_03021294.1| clp protease [Bacillus anthracis Tsiankovskii-I] gi|227813295|ref|YP_002813304.1| clp protease [Bacillus anthracis str. CDC 684] gi|229601887|ref|YP_002868036.1| clp protease [Bacillus anthracis str. A0248] gi|254683496|ref|ZP_05147356.1| clp protease [Bacillus anthracis str. CNEVA-9066] gi|254722017|ref|ZP_05183806.1| clp protease [Bacillus anthracis str. A1055] gi|254735835|ref|ZP_05193541.1| clp protease [Bacillus anthracis str. Western North America USA6153] gi|254739639|ref|ZP_05197333.1| clp protease [Bacillus anthracis str. Kruger B] gi|254755988|ref|ZP_05208019.1| clp protease [Bacillus anthracis str. Vollum] gi|254759351|ref|ZP_05211376.1| clp protease [Bacillus anthracis str. Australia 94] gi|30258443|gb|AAP27662.1| clp protease [Bacillus anthracis str. Ames] gi|47504372|gb|AAT33048.1| clp protease [Bacillus anthracis str. 'Ames Ancestor'] gi|49180573|gb|AAT55949.1| conserved hypothetical protein [Bacillus anthracis str. Sterne] gi|164711650|gb|EDR17196.1| clp protease [Bacillus anthracis str. A0488] gi|167512277|gb|EDR87654.1| clp protease [Bacillus anthracis str. A0193] gi|167528818|gb|EDR91576.1| clp protease [Bacillus anthracis str. A0442] gi|170668159|gb|EDT18908.1| clp protease [Bacillus anthracis str. A0465] gi|172082478|gb|EDT67543.1| clp protease [Bacillus anthracis str. A0174] gi|190560391|gb|EDV14369.1| clp protease [Bacillus anthracis Tsiankovskii-I] gi|227006134|gb|ACP15877.1| clp protease [Bacillus anthracis str. CDC 684] gi|229266295|gb|ACQ47932.1| clp protease [Bacillus anthracis str. A0248] Length = 249 Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHIIPQIVAIEQNPKIEGLLIVLNTVGGDVEAGLAISEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224 Query: 231 EEVWQSLYAL 240 + L L Sbjct: 225 GNAIRKLNEL 234 >gi|194467896|ref|ZP_03073882.1| peptidase S14 ClpP [Lactobacillus reuteri 100-23] gi|194452749|gb|EDX41647.1| peptidase S14 ClpP [Lactobacillus reuteri 100-23] Length = 258 Score = 48.8 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 37/267 (13%), Positives = 80/267 (29%), Gaps = 39/267 (14%) Query: 31 VEDNSPHVARIAIRGQIE-----DSQELIERIERISRD-DSATALIVSLSSPGGSAYAGE 84 +++ + I G+I D+ + + + ++SPGGS + G Sbjct: 13 KQESKNMTPEMYIDGEIVTDEYEDTDTSAAGFRNALKSLGDVKNINLHINSPGGSVFEGI 72 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 AI+ ++ +N + + +AAS +I+ + + I S++ Sbjct: 73 AIYNMLK--QNSAHINVYIDGLAASIASVIAMSGDAIFMPSNSMMMVHNPWVMAIGNANE 130 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 L K ++ + L + Sbjct: 131 LRKQADALDQITK----------------------------SSVQTYLAKAGDKLDEKTL 162 Query: 205 LVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 L D W T EA GL D V + S+ R + + + + Sbjct: 163 TQLMDDETWLTAQEAVDYGLADEVMEPNKAVASINKQF-VSRYRHVPEQLIKQAEHDDNK 221 Query: 264 KNLSISSLLEDTIPLMKQTKVQGLWAV 290 N +L ++ + + + + A+ Sbjct: 222 LNSEQ-NLEQEQLNKIHEKALANAKAL 247 >gi|325279621|ref|YP_004252163.1| peptidase S49 [Odoribacter splanchnicus DSM 20712] gi|324311430|gb|ADY31983.1| peptidase S49 [Odoribacter splanchnicus DSM 20712] Length = 467 Score = 48.8 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 86/241 (35%), Gaps = 17/241 (7%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-ELIERIERISRDDSATALIVSLS 74 ++ + + + + + V ++ I+ +I L + ++ + A +++ ++ Sbjct: 10 LVLLVLGICWLNTLGAAEPEKVVYKVDIKDEIGPEVWRLARKSFDLAGQEKADYILIHMN 69 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 + GG +++ I + +RKPV + AASAG LIS A + I E + +G+ V Sbjct: 70 TYGGMVVYADSLRSMI--LNSRKPVWVFIDNNAASAGALISIACDKIYMREGANIGAATV 127 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + Q P + + ++ + + + + + + Sbjct: 128 VNQTGEAMPDKYQSYMRSMIRSTAEAQGRDTLVQGRDTVYRWKRNPHIAEAMVDQSIYI- 186 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIKDWN 253 +T EA K G D + EEV + I+ ++ Sbjct: 187 -------QGITDSGRVVTFTAREAMKYGFCDGMAESVEEVLKK-----EQVENYTIRSYH 234 Query: 254 P 254 P Sbjct: 235 P 235 >gi|295110105|emb|CBL24058.1| Protease subunit of ATP-dependent Clp proteases [Ruminococcus obeum A2-162] Length = 240 Score = 48.8 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 62/200 (31%), Gaps = 25/200 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + ++ ++ I D L++ L++ GG AG AI I + + + Sbjct: 64 EHVLPKLALIEDDKDVDGLLILLNTVGGDVEAGLAIAEMIASLSIPTVSLVLGGGHSIGV 123 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +S + V + T ++ + + V + + + + Sbjct: 124 PMAVSADYSFAVPSATMVIHPVRSSGMFIGVAQSYRNIEKIQDRITGFIAAHSGTTQERL 183 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + Q V D G + G EA K GLI+ +GG Sbjct: 184 EELMLDTSQLVKDV-------------------------GTMLEGREAVKEGLINEIGGI 218 Query: 231 EEVWQSLYALGVDQSIRKIK 250 E L+ + ++ K Sbjct: 219 REALARLHQMIEEKEAADKK 238 >gi|153871566|ref|ZP_02000706.1| conserved hypothetical protein, membrane [Beggiatoa sp. PS] gi|152071969|gb|EDN69295.1| conserved hypothetical protein, membrane [Beggiatoa sp. PS] Length = 457 Score = 48.8 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 65/214 (30%), Gaps = 7/214 (3%) Query: 14 MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIV 71 + SL+ + + S + + I+G I + L +E + T +++ Sbjct: 6 LFSLILIFLALLSPLQTQANGKAW--VLDIKGAIGPATADYLKRGLEDAR-NQGVTIVVL 62 Query: 72 SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 + +PGG A + +AI A++ ++ + A Sbjct: 63 RMDTPGGLDIAMREMIQAIIASPIPIVTYVSPPGARAASAGTYILYASHVAAMAPG-TNL 121 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 S S + KA+ + + + V D+ + Sbjct: 122 GAATPVTIGGGGIPGLPENSDDSKNKTDDKADSEDKTTQSTSETMTHKMVNDAEAYLRSL 181 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 RN + + + + +A + G+ID Sbjct: 182 AQMHGRNQEWAAL-AVRESASLSAQDALEKGVID 214 >gi|260459137|ref|ZP_05807392.1| Endopeptidase Clp [Mesorhizobium opportunistum WSM2075] gi|259034691|gb|EEW35947.1| Endopeptidase Clp [Mesorhizobium opportunistum WSM2075] Length = 201 Score = 48.8 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G+I D + ++ + D+ + + ++SPGG +G AI+ +Q + Sbjct: 33 IIFINGEINDDISALVCAQLLSLESDNPDKEISLYINSPGGVVTSGFAIYDTMQYISCPV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L++ ++ + + L + Sbjct: 93 STVCMGFAASMGSFLLMAGTPGRRISLPNATILLHQPLGGFQGQ---------------- 136 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 +Q + + + L ++ Y++ L T Sbjct: 137 --------------ASDIQRHAERIVKTKRHMAELYAQHCGRSYEEVERTLDRDHFMTAR 182 Query: 217 EAKKVGLIDVV 227 EA+ G++D V Sbjct: 183 EAQAWGIVDHV 193 >gi|229104359|ref|ZP_04235028.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-28] gi|228679057|gb|EEL33265.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-28] Length = 249 Score = 48.8 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224 Query: 231 EEVWQSLYAL 240 Q L L Sbjct: 225 GSALQKLNEL 234 >gi|288556926|ref|YP_003428861.1| hypothetical protein BpOF4_19650 [Bacillus pseudofirmus OF4] gi|288548086|gb|ADC51969.1| hypothetical protein BpOF4_19650 [Bacillus pseudofirmus OF4] Length = 249 Score = 48.8 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 73/201 (36%), Gaps = 27/201 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ + ++ L++ L++ GG AG AI + + KP +T V S Sbjct: 70 EHIIPQLVAVEQNPKIEGLLLILNTVGGDVEAGLAISEMVASM--SKPSVTLVLGGGHSI 127 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G I+ A+N A+T+ + V + ++ Sbjct: 128 GVPIAVAANYSFIAKTATMTIHPVRLTGLVIGVP-----------------QTFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + + S F L+ N+ D G G +A + GLID VGG Sbjct: 171 QERVISFVTQQSGISEEKFKELMLSKGNLTRDI------GTNVVGTDAVEYGLIDEVGGI 224 Query: 231 EEVWQSLYALGVDQSIRKIKD 251 + L L + + +K+ Sbjct: 225 GSALKKLNEL--IDANKPVKE 243 >gi|269102129|ref|ZP_06154826.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268162027|gb|EEZ40523.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 207 Score = 48.8 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIYLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + I ++ Sbjct: 102 STVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQIHAQEILTI-- 159 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L++E P + + Sbjct: 160 ----------------------------KQKLNNLLAEHTGQPLEVIERDTDRDNFMSAD 191 Query: 217 EAKKVGLIDVV 227 +A + GL+D V Sbjct: 192 QAVEYGLVDAV 202 >gi|330808572|ref|YP_004353034.1| endopeptidase Clp (ATP-dependent Clp protease proteolytic subunit ClpP) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376680|gb|AEA68030.1| endopeptidase Clp (ATP-dependent Clp protease proteolytic subunit ClpP) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 211 Score = 48.8 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 60/197 (30%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 45 VIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L + A S V L + ++ I + Sbjct: 105 STTCIGQACSMGAFLLTAGAHGKRYCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFI-- 162 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L+++ ++ + + Sbjct: 163 ----------------------------RERLNTLMAKHSGRTLEEIERDTNRDNFMSAE 194 Query: 217 EAKKVGLIDVVGGQEEV 233 A++ GLID V Q Sbjct: 195 AAREYGLIDEVINQRPA 211 >gi|323140768|ref|ZP_08075687.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Phascolarctobacterium sp. YIT 12067] gi|322414786|gb|EFY05586.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Phascolarctobacterium sp. YIT 12067] Length = 197 Score = 48.8 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G I+D+ +I ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IVFVTGPIDDNMANVVIAQLLFLESEDPDKDIHLYINSPGGSVSAGMAIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ L + A A S V L ++ I + Sbjct: 89 STICMGMAASMASVLLAAGAPGKRFALPYSRVMIHQPLGGAQGQATEIEIHAREILRI-- 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 +++++ +K T Sbjct: 147 ----------------------------REEMNQVLAKHTGQTVEKIAADTERDHYLTSK 178 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 179 EAKEYGLIDEV 189 >gi|257791675|ref|YP_003182281.1| Endopeptidase Clp [Eggerthella lenta DSM 2243] gi|317487860|ref|ZP_07946452.1| Clp protease [Eggerthella sp. 1_3_56FAA] gi|325830649|ref|ZP_08164070.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Eggerthella sp. HGA1] gi|257475572|gb|ACV55892.1| Endopeptidase Clp [Eggerthella lenta DSM 2243] gi|316912986|gb|EFV34503.1| Clp protease [Eggerthella sp. 1_3_56FAA] gi|325487395|gb|EGC89837.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Eggerthella sp. HGA1] Length = 207 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 62/197 (31%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + QI+D + ++ ++ + D + + ++SPGGS AG AI + +K Sbjct: 35 VIFLGEQIDDNVANSVVAQLLHLESADPDKDISLYINSPGGSVTAGLAILDTMDFIKCDV 94 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L + A + S+V + + + Sbjct: 95 STICLGECASMAAVLLSNGAKGKRLCLPNSMVLIHQPSGGAQGQQTEIAIVAD------- 147 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + + ++++++ + T Sbjct: 148 -----------------------FMLKTRNRLNKILADNTGQTLETIQNDTERDNYMTAE 184 Query: 217 EAKKVGLIDVVGGQEEV 233 EA GL+D + V Sbjct: 185 EAVAYGLVDRITTSRAV 201 >gi|239636619|ref|ZP_04677621.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus warneri L37603] gi|239597974|gb|EEQ80469.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus warneri L37603] Length = 196 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 62/192 (32%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + QI+D + ++ ++ + DS + + ++SPGGS AG AI+ IQ +K Sbjct: 29 IIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + V L ++ Sbjct: 89 QTICIGMAASMGSFLLAAGAKGKRYALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + R+++E +K T Sbjct: 142 -----------------------HILKTREKLNRILAERTGQSIEKIQQDTDRDNFLTAE 178 Query: 217 EAKKVGLIDVVG 228 EAK GL+D V Sbjct: 179 EAKAYGLVDEVM 190 >gi|314933077|ref|ZP_07840443.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus caprae C87] gi|313654396|gb|EFS18152.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus caprae C87] Length = 195 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 63/192 (32%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + QI+D + ++ ++ + DS + + ++SPGGS AG AI+ IQ +K Sbjct: 29 IIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + V L ++ Sbjct: 89 QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + R+++E +K T Sbjct: 142 -----------------------HILKTREKLNRILAERTGQSIEKIQQDTDRDNFLTAE 178 Query: 217 EAKKVGLIDVVG 228 EAK+ GLID V Sbjct: 179 EAKEYGLIDEVM 190 >gi|229098266|ref|ZP_04229213.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-29] gi|228685164|gb|EEL39095.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-29] Length = 249 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224 Query: 231 EEVWQSLYAL 240 Q L L Sbjct: 225 GSALQKLNEL 234 >gi|223043057|ref|ZP_03613105.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus capitis SK14] gi|222443911|gb|EEE50008.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus capitis SK14] Length = 195 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 63/192 (32%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + QI+D + ++ ++ + DS + + ++SPGGS AG AI+ IQ +K Sbjct: 29 IIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + V L ++ Sbjct: 89 QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + R+++E +K T Sbjct: 142 -----------------------HILKTREKLNRILAERTGQSIEKIQQDTDRDNFLTAE 178 Query: 217 EAKKVGLIDVVG 228 EAK+ GLID V Sbjct: 179 EAKEYGLIDEVM 190 >gi|228987450|ref|ZP_04147569.1| ATP-dependent Clp protease proteolytic subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772182|gb|EEM20629.1| ATP-dependent Clp protease proteolytic subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 240 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 75/256 (29%), Gaps = 50/256 (19%) Query: 31 VEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSA 80 + A + I G+I S ++ + D + + ++SPGGS Sbjct: 2 KASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDD--IETINLYINSPGGSV 59 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + AI +Q+ + + VI+ + + AS ++ S+ I+ S++ Sbjct: 60 FETMAIIAMLQRHQAK--VISYIDGIGASCASVLPMISDKIIMYANSMMMIHNAWTYASG 117 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L K I+ + L + Sbjct: 118 NANQLRKAADDIERINQ----------------------------SMVQHYLTRAGDKLD 149 Query: 201 YDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 D L D W + EA GL D + L + +K++ Sbjct: 150 EDTLKQLLDAETWLSAEEAMNYGLCDEIISANNAAACL-------DEKWMKEYKNVPQQL 202 Query: 260 FCDLKNLSISSLLEDT 275 N+ + +LE Sbjct: 203 VNAQANIPSNEMLERQ 218 >gi|332976916|gb|EGK13738.1| translocation-enhancing protein TepA [Desmospora sp. 8437] Length = 257 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 61/187 (32%), Gaps = 25/187 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I ++ + +I+ L++ GG AG A+ I + + Sbjct: 82 EHVIPQIVAAEQNRNIEGVIIILNTVGGDVEAGLALAEMIASMSKPTVSL---------- 131 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 ++ S+ I V + + +++ V+ + + E Sbjct: 132 ----------VLGGGHSIGVPIAVSAD---ISFIAETATMTVHPVRLTGLVVGVPQTFEY 178 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 K + V + E + + I GA+A K GLID VGG Sbjct: 179 MEKMQDRVIRFVSDHSNIGEERFRELMFRTGELARDIGTNVI--GADAVKYGLIDRVGGL 236 Query: 231 EEVWQSL 237 E L Sbjct: 237 AEALGEL 243 >gi|257460311|ref|ZP_05625414.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter gracilis RM3268] gi|257442376|gb|EEV17516.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter gracilis RM3268] Length = 194 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I+D+ ++ ++ + +D + + ++SPGG +G +I+ + +K Sbjct: 28 IVMLSGEIDDAVASSIVAQLLFLEAEDPDKDIYLYINSPGGVVTSGFSIYDTMNYIKPDV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A A S + L ++ Sbjct: 88 STICIGQAASMGAFLLSCGAKGKRYALPNSRIMIHQPLGGAQGQATDIE----------- 136 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + ++S++ + +D + + Sbjct: 137 -------------------IQAKEILRMKEILNGILSQNSGKDLAQVEKDTDRDFFMSAE 177 Query: 217 EAKKVGLIDVV 227 +A + GLID V Sbjct: 178 DAVQYGLIDQV 188 >gi|330684877|gb|EGG96562.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Staphylococcus epidermidis VCU121] Length = 196 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 61/192 (31%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + QI+D + ++ ++ + DS + + ++SPGGS AG AI+ IQ +K Sbjct: 29 IIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + V L ++ Sbjct: 89 QTICIGMAASMGSFLLAAGAKGKRYALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + R+ SE +K T Sbjct: 142 -----------------------HILKTREKLNRIFSERTGQSIEKIQQDTDRDNFLTAE 178 Query: 217 EAKKVGLIDVVG 228 EAK GL+D V Sbjct: 179 EAKAYGLVDEVM 190 >gi|325142748|gb|EGC65122.1| hypothetical protein NMB9615945_0670 [Neisseria meningitidis 961-5945] Length = 92 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 8/98 (8%) Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 F + VSE+R P ++ G W G +A + LID + +++ + + Sbjct: 1 MFKQFVSENR--PQLDIEEVATGEHWFGRQALALNLIDEISTSDDLLLKAFE------NK 52 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++ + + L + +E + + Sbjct: 53 QVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRAD 90 >gi|302871325|ref|YP_003839961.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Caldicellulosiruptor obsidiansis OB47] gi|302574184|gb|ADL41975.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Caldicellulosiruptor obsidiansis OB47] Length = 195 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I D ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 30 IVILSGEITDDIASLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGFAIYDTMQYIKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A S + L Sbjct: 90 STICVGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGVRGQ---------------- 133 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +++ + + + +++SE P + +D + T Sbjct: 134 --------------ATDIKIHAEWILKIKNRINKILSERTGQPIEVIERDTDRDFFMTAE 179 Query: 217 EAKKVGLIDVV 227 EA K G+ID V Sbjct: 180 EALKYGIIDRV 190 >gi|289679276|ref|ZP_06500166.1| serine peptidase S49 family protein [Pseudomonas syringae pv. syringae FF5] Length = 112 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 13/109 (11%) Query: 36 PHVARIAIRGQ----------IEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYA 82 VA I + G I + L ++ D S ++I+++ SPGG A Sbjct: 4 NGVAIIPVVGPVFRYANLFTEISGATSTQVLATDLQSALDDPSIKSIILNIDSPGGVAAG 63 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 + I + RK ++ V ASA Y ++ A++ IV ET+L+GS Sbjct: 64 INELADQIHAGRARKRIVAYVGGTGASAAYWLASAASEIVIDETALLGS 112 >gi|257068142|ref|YP_003154397.1| ATP-dependent Clp protease proteolytic subunit ClpP [Brachybacterium faecium DSM 4810] gi|256558960|gb|ACU84807.1| ATP-dependent Clp protease proteolytic subunit ClpP [Brachybacterium faecium DSM 4810] Length = 233 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 61/186 (32%), Gaps = 26/186 (13%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D + + ++SPGGS A AI+ +Q +K + + Sbjct: 67 ASADDVMAQLLVLESQDPDRDITLYINSPGGSFTALTAIYDTMQYIKPEVTTVCLGQAAS 126 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + + +A + + L + + Sbjct: 127 AAAVLLAAGSPGKRLALPNARILIHQPAMGGEGGGGQASDLEIQANEIM----------- 175 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 + + +++ + VS+ + +I T A + GL+D V Sbjct: 176 -----RMREWLEETLAHHSGRTKEQVSK----------DIERDKILTAKAALEYGLVDQV 220 Query: 228 GGQEEV 233 + Sbjct: 221 LESRKA 226 >gi|194015072|ref|ZP_03053689.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus pumilus ATCC 7061] gi|194014098|gb|EDW23663.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus pumilus ATCC 7061] Length = 242 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 67/194 (34%), Gaps = 25/194 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I + ++ L++ L++ GG AG AI + + I + Sbjct: 65 EHVIPQIVAVEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 124 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +SC + I T + + + V + L ++ Sbjct: 125 PIAVSCDYSYIAETATMTIHPVRLTGLVIGVPQTFEYLD-------------------KM 165 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + + + + F L+ N+ D G G EA + GL++ VGG Sbjct: 166 QERVINFVTSHSNITEEKFKELMFSKGNLTRDI------GTNVVGHEAAEYGLMNEVGGV 219 Query: 231 EEVWQSLYALGVDQ 244 + + L L ++ Sbjct: 220 GQAIKKLNELIGER 233 >gi|70731346|ref|YP_261087.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas fluorescens Pf-5] gi|110816462|sp|Q4K9J6|CLPP_PSEF5 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|68345645|gb|AAY93251.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas fluorescens Pf-5] Length = 211 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 60/197 (30%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 45 VIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L + A S V L + ++ I + Sbjct: 105 STTCIGQACSMGAFLLTAGAPGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFI-- 162 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L+++ ++ + + Sbjct: 163 ----------------------------RERLNTLMAKHSGRTLEEIERDTNRDNFMSAE 194 Query: 217 EAKKVGLIDVVGGQEEV 233 A++ GLID V Q Sbjct: 195 AAREYGLIDEVINQRPA 211 >gi|147797194|emb|CAN64666.1| hypothetical protein VITISV_024612 [Vitis vinifera] Length = 221 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ + + + L+SPGG+ AG AI+ +Q +++ Sbjct: 36 IVCINGPISDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGAVSAGLAIYDTMQYIRSPV 95 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + + Y + I V Sbjct: 96 NTICLGQAASMGSLLLAAGAKGERRALPNATIMIHQPSGGYSGQAKDMTIHTKQIIRV-- 153 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + L ++ D D + T Sbjct: 154 ----------------------------WDSLNALYAKHTGQSLDIIQKNMDRDYFMTPE 185 Query: 217 EAKKVGLIDVVGG 229 EAK+ G+ID V Sbjct: 186 EAKEFGIIDEVID 198 >gi|134300444|ref|YP_001113940.1| peptidase S14, ClpP [Desulfotomaculum reducens MI-1] gi|134053144|gb|ABO51115.1| peptidase S14, ClpP [Desulfotomaculum reducens MI-1] Length = 258 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 60/184 (32%), Gaps = 31/184 (16%) Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 +++ + + ++S GGS + G AI+ +++ +K + A S +I+ A Sbjct: 48 NELAKYPDVKEIKIFINSYGGSVFEGTAIYSQLRRHPAQKT--VYIDGFACSVASVIAMA 105 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 + ++ + +++ L K + ++ + Sbjct: 106 GDRVIMPKNTMMMIHNAWNIVAGNATQLRKAADDLDTIMAG------------------- 146 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQS 236 + L + I +K + L D W T + + G D + ++ Sbjct: 147 ---------NRQSYLQKSNGKITEEKLIELLDAETWLTAEQCIEYGFADELLEKDADLTE 197 Query: 237 LYAL 240 L Sbjct: 198 AKQL 201 >gi|319891770|ref|YP_004148645.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus pseudintermedius HKU10-03] gi|317161466|gb|ADV05009.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus pseudintermedius HKU10-03] Length = 195 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 67/197 (34%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + ++ ++ + D+ + + ++SPGGS AG AI+ IQ +K Sbjct: 29 IIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + V L ++ Sbjct: 89 QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAK------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216 + + +++SE P +K +D T Sbjct: 142 -----------------------HILRTRERLNKILSELTGQPIEKIEKDTDRDNFLTAQ 178 Query: 217 EAKKVGLIDVVGGQEEV 233 EAK+ GLID V E+ Sbjct: 179 EAKEYGLIDEVMEPEKA 195 >gi|297737943|emb|CBI27144.3| unnamed protein product [Vitis vinifera] Length = 209 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ + + + L+SPGG+ AG AI+ +Q +++ Sbjct: 24 IVCINGPISDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGAVSAGLAIYDTMQYIRSPV 83 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + + Y + I V Sbjct: 84 NTICLGQAASMGSLLLAAGAKGERRALPNATIMIHQPSGGYSGQAKDMTIHTKQIIRV-- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + L ++ D D + T Sbjct: 142 ----------------------------WDSLNALYAKHTGQSLDIIQKNMDRDYFMTPE 173 Query: 217 EAKKVGLIDVVGG 229 EAK+ G+ID V Sbjct: 174 EAKEFGIIDEVID 186 >gi|319644956|ref|ZP_07999189.1| YqeZ protein [Bacillus sp. BT1B_CT2] gi|317392765|gb|EFV73559.1| YqeZ protein [Bacillus sp. BT1B_CT2] Length = 439 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 61/133 (45%), Gaps = 4/133 (3%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISR 62 +LKK + +V L+ + + V+ + V I I +E + +ER + + Sbjct: 2 LLKKFR-IFVALACGFVLFLLLGVHLTVKADGDTVYVIPIEETVEKGLSKFLERSFQEAE 60 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D +A +I+ +++PGG+ A + I + PV V+ A SAG ++ ++ I Sbjct: 61 DMNAKHIILDINTPGGAVDAVLDMADTI--HNSDIPVTAYVNRRALSAGAYLALNADDIY 118 Query: 123 AAETSLVGSIGVL 135 A +G+ ++ Sbjct: 119 MAPGGKMGAAAII 131 >gi|258564300|ref|XP_002582895.1| clp protease [Uncinocarpus reesii 1704] gi|237908402|gb|EEP82803.1| clp protease [Uncinocarpus reesii 1704] Length = 222 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 64/195 (32%), Gaps = 31/195 (15%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++++S ++ ++ + D+ + + ++SPGGS AG AI+ + +++ Sbjct: 47 IICLNGEVDESVSASIVAQLLFLEADNPEKQISLYINSPGGSVTAGLAIYDTMTYIQSPV 106 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L S + Y + Sbjct: 107 STICIGQAASMGSLLLCGGEPGKRFCLPHSSIMIHQPSGGYFGQATDIAIHA-------- 158 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 K ++N + + + D+ L + + G + Sbjct: 159 ---KEILRVRKQLNEIYKRHLTKEI-----------------SLDEIEKLMERDYFMGAS 198 Query: 217 EAKKVGLIDVVGGQE 231 EA +G++D + + Sbjct: 199 EALGMGIVDGIMDRR 213 >gi|254797097|ref|YP_003081935.1| Clp protease [Neorickettsia risticii str. Illinois] gi|254590339|gb|ACT69701.1| Clp protease [Neorickettsia risticii str. Illinois] Length = 209 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G IED ++ ++ + ++ + + ++SPGG AG +I+ +Q ++ Sbjct: 37 VVFLTGPIEDGMASLIVAQLLFLEAENPEKDIFMYINSPGGVVTAGLSIYDTMQYIRPSV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + +A++ L S A A S V ++ Sbjct: 97 STVCVGQAASAASLILASGAEGKRFALPHSRVMVHQPSGGVRGQATDMEIHVKE------ 150 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + K L + + + Sbjct: 151 ------------------------ILQLKRMINEIYRKHTGETIKKIETLLERDTFLSPE 186 Query: 217 EAKKVGLIDVVGG 229 EAKKVGLID + Sbjct: 187 EAKKVGLIDDIIT 199 >gi|257440282|ref|ZP_05616037.1| Clp protease [Faecalibacterium prausnitzii A2-165] gi|257197316|gb|EEU95600.1| Clp protease [Faecalibacterium prausnitzii A2-165] Length = 228 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 59/192 (30%), Gaps = 33/192 (17%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ + D + L+V +++ GG AG A+ I + + + Sbjct: 59 EHVIPQLVAVQEDPAVEGLLVLINTVGGDVEAGLALAELIASISKPSATVVLGGGHSIGI 118 Query: 111 GYLISCASNIIVAAETSLVGSI----GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 A + ++ G++ P + +++ I + + Sbjct: 119 PL-AVSARRSFIVPTATMTVHPVRHSGMILGVPQTMRWFEQMQERITGFVAGHSGITAAR 177 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 +SE+ G + G +A K LID Sbjct: 178 YSEL-----------------------MLRTGELVMDV-----GTMLDGKKAVKEKLIDQ 209 Query: 227 VGGQEEVWQSLY 238 +GG + + LY Sbjct: 210 LGGISDALEWLY 221 >gi|260892392|ref|YP_003238489.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ammonifex degensii KC4] gi|260864533|gb|ACX51639.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ammonifex degensii KC4] Length = 200 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 65/195 (33%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G I+D + +I ++ + +D + + ++SPGG AG AI+ +Q ++ Sbjct: 31 IIFIGGPIDDHLANLVIAQLLFLEAEDPEKDIHLYINSPGGLVTAGMAIYDTMQYIRPDV 90 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L + A A + + L + ++ Sbjct: 91 STICLGQAASMAAFLLAAGAKGKRYALPYARIMLHQPLGGFQGQATEVEIHARE------ 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + L+S+ P +K +D + T Sbjct: 145 ------------------------IMRMRQVLNELLSKHTGQPVEKIAQDTDRDFFMTAQ 180 Query: 217 EAKKVGLIDVVGGQE 231 +AK GLID V Sbjct: 181 QAKDYGLIDEVITMR 195 >gi|77459919|ref|YP_349426.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas fluorescens Pf0-1] gi|92087005|sp|Q3K9W9|CLPP_PSEPF RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|77383922|gb|ABA75435.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudomonas fluorescens Pf0-1] Length = 211 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 60/197 (30%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 45 VIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L + A S V L + ++ I + Sbjct: 105 STTCIGQACSMGAFLLTAGAPGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFI-- 162 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L+++ ++ + + Sbjct: 163 ----------------------------RERLNTLMAKHSGRTLEEIERDTNRDNFMSAE 194 Query: 217 EAKKVGLIDVVGGQEEV 233 AK+ GLID V Q Sbjct: 195 AAKEYGLIDEVINQRPA 211 >gi|70727122|ref|YP_254036.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus haemolyticus JCSC1435] gi|124013829|sp|Q4L4J5|CLPP_STAHJ RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|68447846|dbj|BAE05430.1| clpP [Staphylococcus haemolyticus JCSC1435] Length = 195 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 66/196 (33%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + ++ ++ + DS + + ++SPGGS AG AI+ IQ +K Sbjct: 29 IIMLGSAIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + V L ++ Sbjct: 89 QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216 + + ++++E +K +D T Sbjct: 142 -----------------------HILKTREKLNKILAERTGQSIEKIQKDTDRDNFLTAD 178 Query: 217 EAKKVGLIDVVGGQEE 232 EAK+ GLID V E+ Sbjct: 179 EAKEYGLIDNVMQPED 194 >gi|71000128|ref|XP_754781.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aspergillus fumigatus Af293] gi|66852418|gb|EAL92743.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aspergillus fumigatus Af293] gi|159127789|gb|EDP52904.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aspergillus fumigatus A1163] Length = 175 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 23/183 (12%), Positives = 52/183 (28%), Gaps = 27/183 (14%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 S ++ ++ + D+ + + ++SPGGS AG AI+ + + + I + Sbjct: 2 SASIVAQLLFLEADNPQKPIHLYINSPGGSVTAGLAIYDTMTYIASPVSTICVGQAASMG 61 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 + L S + Sbjct: 62 SLLLCGGDPGKRYCLPHSSIMIHQPSG---------------------GYFGQASDIAIH 100 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-AEAKKVGLIDVVG 228 Q H + V + ++ L + + G EA ++G++D + Sbjct: 101 AKEILRVRNQLNKIYQRHLTGKKV-----LSLEEIEKLMERDYFMGAQEALEMGIVDEIL 155 Query: 229 GQE 231 + Sbjct: 156 DRR 158 >gi|167037548|ref|YP_001665126.1| hypothetical protein Teth39_1135 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115963|ref|YP_004186122.1| hypothetical protein Thebr_1163 [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856382|gb|ABY94790.1| protein of unknown function DUF107 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929054|gb|ADV79739.1| protein of unknown function DUF107 [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 436 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 97/288 (33%), Gaps = 34/288 (11%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-QELIERIERISR 62 + ++ T + L L F+ S + V + IRG ++ + ++R ++ Sbjct: 1 MRSRVGTFVIFLITALLFFSLFTNVSGLPKEKGEVLFVPIRGTVDPGMAKFVKRAVEEAK 60 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 + A L+ +++PGG A I + I + + P V+ A SAG LI+ + + Sbjct: 61 ETEAALLVFEINTPGGLVDAAVEISQTI--LNSPVPTAAYVNSQATSAGVLIAISCENLY 118 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A S + + ++V + + Sbjct: 119 MAPGSTI--------------------GAAETVPKEEKTISYWRSKLEGAAERRGRDPRI 158 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALG 241 ++ + + T +A ++ L D + ++E+ L Sbjct: 159 VAAMADADVEI--------EGLKERGKILSLTAKKALELKLADGIAADRKELLTVLG--V 208 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 D+ ++++K + + F ++ L I ++ + G A Sbjct: 209 GDRDVKEVKPFFSERIASFVTSPFVAPMFLTIGFIGIITEVLTPGFGA 256 >gi|15923758|ref|NP_371292.1| ATP-dependent Clp protease proteolytic subunit-like protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926445|ref|NP_373978.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus N315] gi|21282459|ref|NP_645547.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus MW2] gi|49483025|ref|YP_040249.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus MRSA252] gi|49485640|ref|YP_042861.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus MSSA476] gi|57650109|ref|YP_185707.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus COL] gi|82750474|ref|YP_416215.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus RF122] gi|87161484|ref|YP_493453.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194551|ref|YP_499347.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267228|ref|YP_001246171.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus JH9] gi|150393277|ref|YP_001315952.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus JH1] gi|151220948|ref|YP_001331770.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|156979096|ref|YP_001441355.1| ATP-dependent Clp protease proteolytic subunit homologue [Staphylococcus aureus subsp. aureus Mu3] gi|161509038|ref|YP_001574697.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141842|ref|ZP_03566335.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253317258|ref|ZP_04840471.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731397|ref|ZP_04865562.1| ATP-dependent Clp protease proteolytic subunit family protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253732783|ref|ZP_04866948.1| ATP-dependent Clp protease proteolytic subunit family protein [Staphylococcus aureus subsp. aureus TCH130] gi|255005559|ref|ZP_05144160.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257424888|ref|ZP_05601315.1| clp protease [Staphylococcus aureus subsp. aureus 55/2053] gi|257427556|ref|ZP_05603955.1| clp protease [Staphylococcus aureus subsp. aureus 65-1322] gi|257430187|ref|ZP_05606571.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus 68-397] gi|257432888|ref|ZP_05609248.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus E1410] gi|257435792|ref|ZP_05611840.1| clp protease [Staphylococcus aureus subsp. aureus M876] gi|257794910|ref|ZP_05643889.1| clp protease [Staphylococcus aureus A9781] gi|258418226|ref|ZP_05682491.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus aureus A9763] gi|258421524|ref|ZP_05684449.1| clp protease [Staphylococcus aureus A9719] gi|258423417|ref|ZP_05686308.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus A9635] gi|258439133|ref|ZP_05690177.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus A9299] gi|258440939|ref|ZP_05690774.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus aureus A8115] gi|258445769|ref|ZP_05693946.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus A6300] gi|258449581|ref|ZP_05697683.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus A6224] gi|258452184|ref|ZP_05700200.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus A5948] gi|258453981|ref|ZP_05701953.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus A5937] gi|262049552|ref|ZP_06022422.1| hypothetical protein SAD30_0974 [Staphylococcus aureus D30] gi|262052698|ref|ZP_06024889.1| hypothetical protein SA930_1868 [Staphylococcus aureus 930918-3] gi|269202390|ref|YP_003281659.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus ED98] gi|282895064|ref|ZP_06303285.1| Clp protease [Staphylococcus aureus A8117] gi|282903398|ref|ZP_06311289.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus C160] gi|282905178|ref|ZP_06313035.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus Btn1260] gi|282908157|ref|ZP_06315988.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910415|ref|ZP_06318219.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus WBG10049] gi|282913610|ref|ZP_06321399.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus M899] gi|282916110|ref|ZP_06323873.1| Clp protease [Staphylococcus aureus subsp. aureus D139] gi|282918561|ref|ZP_06326298.1| Clp protease [Staphylococcus aureus subsp. aureus C427] gi|282922066|ref|ZP_06329763.1| Clp protease [Staphylococcus aureus A9765] gi|282923527|ref|ZP_06331207.1| Clp protease [Staphylococcus aureus subsp. aureus C101] gi|282926635|ref|ZP_06334265.1| Clp protease [Staphylococcus aureus A10102] gi|283769931|ref|ZP_06342823.1| ATP-dependent Clp protease subunit [Staphylococcus aureus subsp. aureus H19] gi|283957600|ref|ZP_06375053.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus A017934/97] gi|284023791|ref|ZP_06378189.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus 132] gi|293500653|ref|ZP_06666504.1| Clp protease [Staphylococcus aureus subsp. aureus 58-424] gi|293509601|ref|ZP_06668312.1| Clp protease [Staphylococcus aureus subsp. aureus M809] gi|293524187|ref|ZP_06670874.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus M1015] gi|294850496|ref|ZP_06791225.1| Clp protease [Staphylococcus aureus A9754] gi|295406492|ref|ZP_06816298.1| Clp protease [Staphylococcus aureus A8819] gi|295427347|ref|ZP_06819982.1| Clp protease [Staphylococcus aureus subsp. aureus EMRSA16] gi|296276994|ref|ZP_06859501.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus MR1] gi|297208504|ref|ZP_06924933.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245218|ref|ZP_06929092.1| Clp protease [Staphylococcus aureus A8796] gi|297590298|ref|ZP_06948937.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus MN8] gi|300912596|ref|ZP_07130039.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus TCH70] gi|304381609|ref|ZP_07364259.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54036854|sp|P63786|CLPP_STAAW RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|54036862|sp|P99089|CLPP_STAAN RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|54040892|sp|P63785|CLPP_STAAM RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|56748671|sp|Q6GB62|CLPP_STAAS RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|56748685|sp|Q6GIM3|CLPP_STAAR RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|67460165|sp|Q5HHQ0|CLPP_STAAC RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|90183185|sp|Q2YSF8|CLPP_STAAB RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|116243169|sp|Q2G036|CLPP_STAA8 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|124013828|sp|Q2FIM5|CLPP_STAA3 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|166214713|sp|A7WZR9|CLPP_STAA1 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|172048797|sp|A6QF76|CLPP_STAAE RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|189082468|sp|A6TZP7|CLPP_STAA2 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|189082469|sp|A5IQX2|CLPP_STAA9 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|189082470|sp|A8Z045|CLPP_STAAT RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|13700659|dbj|BAB41956.1| clpP [Staphylococcus aureus subsp. aureus N315] gi|14246537|dbj|BAB56930.1| ATP-dependent Clp protease proteolytic subunit homologue [Staphylococcus aureus subsp. aureus Mu50] gi|21203896|dbj|BAB94595.1| clpP [Staphylococcus aureus subsp. aureus MW2] gi|49241154|emb|CAG39832.1| putative ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus MRSA252] gi|49244083|emb|CAG42509.1| putative ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus MSSA476] gi|57284295|gb|AAW36389.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus COL] gi|82656005|emb|CAI80410.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus RF122] gi|87127458|gb|ABD21972.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202109|gb|ABD29919.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740297|gb|ABQ48595.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus JH9] gi|149945729|gb|ABR51665.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus JH1] gi|150373748|dbj|BAF67008.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|156721231|dbj|BAF77648.1| ATP-dependent Clp protease proteolytic subunit homologue [Staphylococcus aureus subsp. aureus Mu3] gi|160367847|gb|ABX28818.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724847|gb|EES93576.1| ATP-dependent Clp protease proteolytic subunit family protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253729257|gb|EES97986.1| ATP-dependent Clp protease proteolytic subunit family protein [Staphylococcus aureus subsp. aureus TCH130] gi|257272458|gb|EEV04581.1| clp protease [Staphylococcus aureus subsp. aureus 55/2053] gi|257275749|gb|EEV07222.1| clp protease [Staphylococcus aureus subsp. aureus 65-1322] gi|257279384|gb|EEV09985.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus 68-397] gi|257282303|gb|EEV12438.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus E1410] gi|257284983|gb|EEV15102.1| clp protease [Staphylococcus aureus subsp. aureus M876] gi|257788882|gb|EEV27222.1| clp protease [Staphylococcus aureus A9781] gi|257839019|gb|EEV63498.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus aureus A9763] gi|257842450|gb|EEV66874.1| clp protease [Staphylococcus aureus A9719] gi|257846478|gb|EEV70501.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus A9635] gi|257847705|gb|EEV71702.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus A9299] gi|257852453|gb|EEV76374.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus aureus A8115] gi|257855345|gb|EEV78283.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus A6300] gi|257857089|gb|EEV79988.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus A6224] gi|257860399|gb|EEV83231.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus A5948] gi|257863846|gb|EEV86602.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus A5937] gi|259159395|gb|EEW44448.1| hypothetical protein SA930_1868 [Staphylococcus aureus 930918-3] gi|259162388|gb|EEW46960.1| hypothetical protein SAD30_0974 [Staphylococcus aureus D30] gi|262074680|gb|ACY10653.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus ED98] gi|269940345|emb|CBI48722.1| putative ATP-dependent Clp protease proteolyticsubunit [Staphylococcus aureus subsp. aureus TW20] gi|282314395|gb|EFB44785.1| Clp protease [Staphylococcus aureus subsp. aureus C101] gi|282317695|gb|EFB48067.1| Clp protease [Staphylococcus aureus subsp. aureus C427] gi|282320058|gb|EFB50405.1| Clp protease [Staphylococcus aureus subsp. aureus D139] gi|282322642|gb|EFB52964.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus M899] gi|282325807|gb|EFB56115.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus WBG10049] gi|282327822|gb|EFB58104.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331585|gb|EFB61097.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus Btn1260] gi|282591528|gb|EFB96600.1| Clp protease [Staphylococcus aureus A10102] gi|282593724|gb|EFB98716.1| Clp protease [Staphylococcus aureus A9765] gi|282596353|gb|EFC01314.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus C160] gi|282762560|gb|EFC02699.1| Clp protease [Staphylococcus aureus A8117] gi|283460078|gb|EFC07168.1| ATP-dependent Clp protease subunit [Staphylococcus aureus subsp. aureus H19] gi|283470062|emb|CAQ49273.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus ST398] gi|283791051|gb|EFC29866.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus A017934/97] gi|285816470|gb|ADC36957.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus 04-02981] gi|290921150|gb|EFD98211.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus M1015] gi|291095658|gb|EFE25919.1| Clp protease [Staphylococcus aureus subsp. aureus 58-424] gi|291467698|gb|EFF10213.1| Clp protease [Staphylococcus aureus subsp. aureus M809] gi|294822634|gb|EFG39074.1| Clp protease [Staphylococcus aureus A9754] gi|294968637|gb|EFG44660.1| Clp protease [Staphylococcus aureus A8819] gi|295128735|gb|EFG58366.1| Clp protease [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886759|gb|EFH25663.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177889|gb|EFH37138.1| Clp protease [Staphylococcus aureus A8796] gi|297576597|gb|EFH95312.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus MN8] gi|298694101|gb|ADI97323.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus ED133] gi|300886842|gb|EFK82044.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus TCH70] gi|302332479|gb|ADL22672.1| putative ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus JKD6159] gi|302750665|gb|ADL64842.1| putative ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339972|gb|EFM05916.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438803|gb|ADQ77874.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus TCH60] gi|312829260|emb|CBX34102.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129024|gb|EFT85021.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus CGS03] gi|315194387|gb|EFU24779.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus CGS00] gi|315196246|gb|EFU26600.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus CGS01] gi|320139896|gb|EFW31757.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus MRSA131] gi|320142013|gb|EFW33841.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus MRSA177] gi|323438624|gb|EGA96368.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus O11] gi|323441949|gb|EGA99586.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus O46] gi|329313489|gb|AEB87902.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus aureus subsp. aureus T0131] gi|329723806|gb|EGG60334.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus 21189] gi|329724642|gb|EGG61149.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus 21172] gi|329729644|gb|EGG66045.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus 21193] Length = 195 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 65/192 (33%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + QI+D + ++ ++ + DS + + ++SPGGS AG AI+ IQ +K Sbjct: 29 IIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + V L ++ Sbjct: 89 QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216 + + R++SE +K +D T Sbjct: 142 -----------------------HILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAE 178 Query: 217 EAKKVGLIDVVG 228 EAK+ GLID V Sbjct: 179 EAKEYGLIDEVM 190 >gi|261205022|ref|XP_002627248.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces dermatitidis SLH14081] gi|239592307|gb|EEQ74888.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces dermatitidis SLH14081] gi|239611539|gb|EEQ88526.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces dermatitidis ER-3] Length = 248 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 24/195 (12%), Positives = 60/195 (30%), Gaps = 31/195 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++++ S ++ ++ + D+ + + ++SPGGS AG A++ + + Sbjct: 62 IVCLNGEVDETLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISAPV 121 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L S V Y + Sbjct: 122 STICVGQAASMGSLLLCGGHPGKRYCLPHSSVMVHQPSGGYFGQATDIAIHA-------- 173 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 K ++N + + D+ + + G Sbjct: 174 ---KEILRVRRQLNEIYKLHLTKE-----------------MSLDEIEKWMERDYFMGAR 213 Query: 217 EAKKVGLIDVVGGQE 231 EA ++G++D + + Sbjct: 214 EALEMGIVDEILDRR 228 >gi|30263954|ref|NP_846331.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. Ames] gi|47778244|ref|YP_020737.2| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186802|ref|YP_030054.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. Sterne] gi|165872161|ref|ZP_02216800.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. A0488] gi|167640964|ref|ZP_02399221.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. A0193] gi|254683648|ref|ZP_05147508.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. CNEVA-9066] gi|254735992|ref|ZP_05193698.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. Western North America USA6153] gi|254743884|ref|ZP_05201567.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. Kruger B] gi|254754338|ref|ZP_05206373.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. Vollum] gi|254757970|ref|ZP_05209997.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. Australia 94] gi|30258598|gb|AAP27817.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. Ames] gi|47551949|gb|AAT33212.2| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49180729|gb|AAT56105.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. Sterne] gi|164712108|gb|EDR17646.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. A0488] gi|167511014|gb|EDR86403.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. A0193] Length = 251 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 80/260 (30%), Gaps = 50/260 (19%) Query: 27 WSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSP 76 + + A + I G+I S ++ + D + + ++SP Sbjct: 9 FFQMKASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDD--IKTINLYINSP 66 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GGS + AI +Q+ + +I+ + + AS ++ S+ I+ S++ Sbjct: 67 GGSVFETMAIIAMLQRHHAK--IISYIDGIGASCASVLPMISDKIIMYANSMMMIHN--- 121 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + Y D+L + ++ + L Sbjct: 122 AWTYASGNADQLRKAADDIE-------------------------RINQSMVQHYLTRAG 156 Query: 197 RNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 + D L D W + EA GL D + L + +K++ Sbjct: 157 DKLDEDTLKQLLDAETWLSAEEAMGYGLCDEIIPANNATACL-------DEKWMKEYKNI 209 Query: 256 KNYWFCDLKNLSISSLLEDT 275 N+S + +LE Sbjct: 210 PQQLVNAQANISSNEMLERQ 229 >gi|237807855|ref|YP_002892295.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Tolumonas auensis DSM 9187] gi|237500116|gb|ACQ92709.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Tolumonas auensis DSM 9187] Length = 207 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED ++ ++ + ++ + + ++SPGGS AG AI+ ++ +K Sbjct: 42 VIFLTGQVEDQMANLIVAQLLFLESENPDKDIYIYINSPGGSVTAGMAIYDTLKFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + ++ V L + Sbjct: 102 STVCMGQACSMGAFLLSAGTKGKRFCLPSARVMIHQPLGGFQGQ---------------- 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 +Q+ + L++E P ++ + Sbjct: 146 --------------ASDIQIHAMEILKIKERLNNLLAEHTGQPLERIERDTDRDNFMSAD 191 Query: 217 EAKKVGLIDVV 227 +A + GL+D + Sbjct: 192 QAVEYGLVDAI 202 >gi|262381176|ref|ZP_06074314.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296353|gb|EEY84283.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 459 Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 96/263 (36%), Gaps = 27/263 (10%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALI 70 ++ L + ++ + I I+ +I+++ + + + +A A++ Sbjct: 4 LLTILTAIILILAISLQSEAKEKSLIYTIDIKKEIDNTTWIYLHNGLSEAKQL-NADAIL 62 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + +++ GG + +++ AI + + PV + AASAG LIS A I + + +G Sbjct: 63 LHMNTYGGLLESADSMRTAI--LYSPIPVYVFIDNNAASAGALISIACKKIYMRKGANIG 120 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 + V+ Q P + + ++ + + + + Sbjct: 121 AATVVNQTGAALPDKYQSYMRSMIRSTAEAQGKDTLIQNGDTIYKWKRD----------- 169 Query: 191 RLVSESRNIPYDKTLVLSDGR---IWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSI 246 L++E+ L D T EA K G D + ++V Sbjct: 170 PLIAEAMVDDRVIVPNLIDSGKVLTLTSQEALKWGYCDGIAESPDQVITEYIG----CKD 225 Query: 247 RKIKDWNPPKNYWFCDLKNLSIS 269 +IK + P WF ++K +S Sbjct: 226 YEIKSYEP---SWFDNVKGFFMS 245 >gi|312128165|ref|YP_003993039.1| ATP-dependent clp protease, proteolytic subunit clpp [Caldicellulosiruptor hydrothermalis 108] gi|312134617|ref|YP_004001955.1| ATP-dependent clp protease, proteolytic subunit clpp [Caldicellulosiruptor owensensis OL] gi|312792981|ref|YP_004025904.1| ATP-dependent clp protease, proteolytic subunit clpp [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876447|ref|ZP_07736431.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Caldicellulosiruptor lactoaceticus 6A] gi|311774668|gb|ADQ04155.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Caldicellulosiruptor owensensis OL] gi|311778184|gb|ADQ07670.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Caldicellulosiruptor hydrothermalis 108] gi|311796805|gb|EFR13150.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Caldicellulosiruptor lactoaceticus 6A] gi|312180121|gb|ADQ40291.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Caldicellulosiruptor kristjanssonii 177R1B] Length = 195 Score = 48.1 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I D ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 30 IVILSGEITDDIASLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGFAIYDTMQYIKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A S + L Sbjct: 90 STICVGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGVRGQ---------------- 133 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +++ + + + +++SE P + +D + T Sbjct: 134 --------------ATDIKIHAEWILKIKNRINKILSERTGQPIEVIERDTDRDFFMTAE 179 Query: 217 EAKKVGLIDVV 227 EA K G+ID V Sbjct: 180 EALKYGIIDKV 190 >gi|304395499|ref|ZP_07377382.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea sp. aB] gi|304356793|gb|EFM21157.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea sp. aB] Length = 207 Score = 48.1 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ ++ +K Sbjct: 42 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMKFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + S V L Y ++ Sbjct: 102 STICMGQACSMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQASDIEIHARE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++E ++ R + + Sbjct: 156 ------------------------ILKVKQRMNELMAEHTGKTLEEIERDTERDRFLSAS 191 Query: 217 EAKKVGLIDVVGGQEE 232 EA + GL+D + + Sbjct: 192 EAVEYGLVDSILTHRQ 207 >gi|228960167|ref|ZP_04121825.1| ATP-dependent Clp protease proteolytic subunit [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799517|gb|EEM46476.1| ATP-dependent Clp protease proteolytic subunit [Bacillus thuringiensis serovar pakistani str. T13001] Length = 240 Score = 48.1 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 40/256 (15%), Positives = 80/256 (31%), Gaps = 50/256 (19%) Query: 31 VEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSA 80 + A + I G+I S ++ + D + + ++SPGGS Sbjct: 2 KASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDD--IETINLYINSPGGSV 59 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + AI +Q+ + + VI+ + + AS ++ S+ I+ S++ + Y Sbjct: 60 FETMAIIAMLQRHQAK--VISYIDGIGASCASVLPMISDKIIMYANSMMMIHN---AWTY 114 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 D+L + ++ + L + Sbjct: 115 ASGNADQLRKAADDIE-------------------------RINQSMVQHYLTRAGEKLD 149 Query: 201 YDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 D L D W + EA GL D + L + +K++ Sbjct: 150 EDTLKQLLDAETWLSAEEAMGYGLCDEIISANNAAACL-------DEKWMKEYKNIPQQL 202 Query: 260 FCDLKNLSISSLLEDT 275 N+S + +LE Sbjct: 203 VNAQANISSNEMLERQ 218 >gi|168186894|ref|ZP_02621529.1| serine protease [Clostridium botulinum C str. Eklund] gi|169295178|gb|EDS77311.1| serine protease [Clostridium botulinum C str. Eklund] Length = 246 Score = 48.1 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 57/176 (32%), Gaps = 31/176 (17%) Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 +++ ++ + + + ++S GG G AI+ +++ +K V A S +I+ A Sbjct: 49 KQLESINNVSNINIFINSYGGEVKEGLAIYNQLKRHPAQKT--VYVDGFACSIASVIAMA 106 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 + ++ +L+ L K ++ + Sbjct: 107 GDKVIMGTNTLMMIHHAAMGAWGNAEELRKAANDVEVIDK-------------------- 146 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEE 232 L + + L D + W + + GL D + G+E+ Sbjct: 147 --------ASCSSYLTKAGDKLSEETLNQLLDNQTWLNAEQCLQYGLCDEIAGKED 194 >gi|157692363|ref|YP_001486825.1| endopeptidase ClpP [Bacillus pumilus SAFR-032] gi|157681121|gb|ABV62265.1| S14 family endopeptidase ClpP [Bacillus pumilus SAFR-032] Length = 249 Score = 48.1 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 67/194 (34%), Gaps = 25/194 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I + ++ L++ L++ GG AG AI + + I + Sbjct: 72 EHVIPQIVAVEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 131 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +SC + I T + + + V + L ++ Sbjct: 132 PIAVSCDYSYIAETATMTIHPVRLTGLVIGVPQTFEYLD-------------------KM 172 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + + + + F L+ N+ D G G EA + GL++ VGG Sbjct: 173 QERVINFVTSHSNITEEKFKELMFSKGNLTRDI------GTNVVGHEAAEYGLMNEVGGV 226 Query: 231 EEVWQSLYALGVDQ 244 + + L L ++ Sbjct: 227 GQAIKKLNELIGER 240 >gi|284047883|ref|YP_003398222.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acidaminococcus fermentans DSM 20731] gi|283952104|gb|ADB46907.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acidaminococcus fermentans DSM 20731] Length = 197 Score = 48.1 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+IED + +I ++ + +D + + ++SPGGS AG AI+ +Q ++ Sbjct: 29 IIFVTGEIEDHMANLIIAQLLFLESEDPDKDVHLYINSPGGSVSAGLAIYDTMQYIRPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ L + A S V L ++ I ++ Sbjct: 89 STICVGMAASMASVLLAAGTKGKRYALPHSRVMIHQPLGGAQGQATDIEIHAREILRIR- 147 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 ++++ ++ T Sbjct: 148 -----------------------------EEMNQILASHTGQTPEQIRLDTERDHFMTAE 178 Query: 217 EAKKVGLIDVV 227 EA GLID V Sbjct: 179 EAANYGLIDQV 189 >gi|237751093|ref|ZP_04581573.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter bilis ATCC 43879] gi|229373538|gb|EEO23929.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter bilis ATCC 43879] Length = 196 Score = 48.1 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 62/195 (31%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I+DS ++ ++ + +D + + ++SPGGS +G +I+ + +K Sbjct: 29 IIMLSGEIDDSVSSSIVAQLLFLEAEDPQKDVFLYINSPGGSVTSGFSIYDTMNYIKPDI 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A + + L ++ Sbjct: 89 CTICVGQAASMGAFLLSCGTKGKRYALPHARIMIHQPLGGARGQATDIE----------- 137 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +++ + K + + + Sbjct: 138 -------------------IQAKEILRLKTIINDILAANTGQSVKKITQDCERDFYMSAD 178 Query: 217 EAKKVGLIDVVGGQE 231 EA+K GLID V + Sbjct: 179 EAQKYGLIDSVMTRS 193 >gi|261405606|ref|YP_003241847.1| hypothetical protein GYMC10_1757 [Paenibacillus sp. Y412MC10] gi|261282069|gb|ACX64040.1| protein of unknown function DUF107 [Paenibacillus sp. Y412MC10] Length = 453 Score = 48.1 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 94/237 (39%), Gaps = 23/237 (9%) Query: 5 LKKIKTRY--VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERIS 61 +++ T V++ L+++ + S + N V I ++ IE +ER + + Sbjct: 7 MRRFLTLTAAVVMMLISIGMYAAPMKSAMAANIGSVYVIPVKQPIERGLTSFMERGFKEA 66 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 ++ +A +++ + +PGG I ++ + P++ + AASAG I+ ++ I Sbjct: 67 KEMAAGLIVLEIDTPGGLVDQAGEIATLMK--GSEIPIVAYITGDAASAGSYIALNADKI 124 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 +E S++G+ ++ + K++ + +E + ++ + Sbjct: 125 AMSEGSMIGAAYMVDARGNRIEDAKLVSW---------WKSKMAGAAEAGGRNKEIAMGM 175 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSL 237 D + + + T +G T EA K G D + EEV + Sbjct: 176 ADINLKVDMPEIGL--------TKQPGEGLSLTHDEALKTGYADTIANSTEEVITWM 224 >gi|145629849|ref|ZP_01785642.1| putative Clp-like protease [Haemophilus influenzae 22.1-21] gi|144977753|gb|EDJ87697.1| putative Clp-like protease [Haemophilus influenzae 22.1-21] Length = 680 Score = 48.1 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 31/254 (12%), Positives = 76/254 (29%), Gaps = 42/254 (16%) Query: 30 HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 ++ + A I+I +I + + ++ + + + + SPGG + G A Sbjct: 27 SIKAKANDTAEISIYDEIGFWGVSAASFAQDLKDCGN--NIKQINLHIHSPGGDVFDGIA 84 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+ ++ V + +AAS +I+ A N ++ E +++ Sbjct: 85 IYNLLKNHPAN--VTVYIDGLAASMASVIAMAGNEVIMPENAMMMIH------------- 129 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 ++ + ++ + + + ++ Sbjct: 130 -----KPWGIQGGDAEDMRKYADLLDKVE------------NTLIPAYASKTGKTPEELA 172 Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 + W G E + G D + S+ + ++ K K+ F Sbjct: 173 EMLSAETWLNGKECVEQGFADKLAEPLVAMASIKSRKLEDFENMPKAM---KDMLFKPQG 229 Query: 265 NLSISSLLEDTIPL 278 N S+ P Sbjct: 230 NAGASAPQATPTPA 243 >gi|194366563|ref|YP_002029173.1| ATP-dependent Clp protease proteolytic subunit [Stenotrophomonas maltophilia R551-3] gi|194349367|gb|ACF52490.1| Endopeptidase Clp [Stenotrophomonas maltophilia R551-3] Length = 202 Score = 48.1 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 24/200 (12%), Positives = 64/200 (32%), Gaps = 33/200 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+++D+ + ++ + ++ + + ++SPGG +G A++ +Q + Sbjct: 33 IIFLNGEVDDTVSALVCAQLLFLESENPEKPIHLYINSPGGVISSGLAMYDTMQYISAPV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + S+ + + + P + L + + Sbjct: 93 HTLC--------------------MGTARSMGSFLLMAGE-PGHRAALANASLHVHQPLG 131 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 F + RL ++ ++ L R + Sbjct: 132 GVQGQASDIFIHAEEMQR---------TKQRITRLYAQHCGRSVEEVEQTLDRDRFMSAE 182 Query: 217 EAKKVGLIDVVGGQEEVWQS 236 +A + GLID V + + + Sbjct: 183 QACEWGLIDQVLLRRDALAA 202 >gi|308185908|ref|YP_003930039.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5 [Pantoea vagans C9-1] gi|308056418|gb|ADO08590.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5 [Pantoea vagans C9-1] Length = 207 Score = 48.1 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 61/196 (31%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ ++ +K Sbjct: 42 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMKFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + S V L Y ++ Sbjct: 102 STICMGQACSMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQASDIEIHARE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++E ++ R + Sbjct: 156 ------------------------ILKVKQRMNELMAEHTGKTLEEIERDTERDRFLSAN 191 Query: 217 EAKKVGLIDVVGGQEE 232 EA + GL+D + + Sbjct: 192 EAVEYGLVDSILTHRQ 207 >gi|297583414|ref|YP_003699194.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus selenitireducens MLS10] gi|297141871|gb|ADH98628.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus selenitireducens MLS10] Length = 197 Score = 48.1 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + ++ ++ ++ DD + + ++SPGGS AG AI+ +Q +K + Sbjct: 29 IIMLGTPIDDNVANSIVAQLLFLAADDPDKDISLYINSPGGSITAGMAIYDTMQFIKPKV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L ++ Sbjct: 89 QTICIGMAASMGAFLLTAGEPGKRYALPNSEVMIHQPLGGAQGQASDIEIHAKR------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216 + ++++E ++ +D + A Sbjct: 143 ------------------------IVEMKEKLNQILAERTGQDIEQIRKDTDRDNFLSAA 178 Query: 217 EAKKVGLIDVVGG 229 +AK+ GLID V Sbjct: 179 QAKEYGLIDEVMD 191 >gi|326803696|ref|YP_004321514.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Aerococcus urinae ACS-120-V-Col10a] gi|326651369|gb|AEA01552.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Aerococcus urinae ACS-120-V-Col10a] Length = 200 Score = 48.1 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 62/199 (31%), Gaps = 33/199 (16%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D +I ++ + D+ + + ++SPGGS AG AI+ +Q V Sbjct: 29 IIMLSGEVNDDMANSVIAQLLFLDAQDNDKDIYIYINSPGGSVTAGMAIYDTMQFVNADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + LI A S V L ++ Sbjct: 89 VTIVTGLAASMGSILLIGGTKGKRYALPHSEVLIHQPLGGVQGQATEIEI---------- 138 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +++E DK D W T Sbjct: 139 --------------------SARHILQTKQTLKEIIAERSGQDIDKVEKDMDRDYWMTAK 178 Query: 217 EAKKVGLIDVVGGQEEVWQ 235 EAK G+ID + + + Sbjct: 179 EAKDYGIIDEIMASNQGLK 197 >gi|262276278|ref|ZP_06054087.1| ATP-dependent Clp protease proteolytic subunit [Grimontia hollisae CIP 101886] gi|262220086|gb|EEY71402.1| ATP-dependent Clp protease proteolytic subunit [Grimontia hollisae CIP 101886] Length = 207 Score = 48.1 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 62/196 (31%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQYIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + I ++K Sbjct: 102 STVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKH 161 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L++E P + Sbjct: 162 ------------------------------RLNTLLAEHTGQPLEVIERDTDRDNFMAAQ 191 Query: 217 EAKKVGLIDVVGGQEE 232 +A GL+D V + + Sbjct: 192 DAVNYGLVDAVLNKRD 207 >gi|222824462|ref|YP_002576036.1| ATP-dependent ClpAP/ClpXP protease, proteolytic subunit ClpP [Campylobacter lari RM2100] gi|254763785|sp|B9KDZ6|CLPP_CAMLR RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|222539683|gb|ACM64784.1| ATP-dependent ClpAP/ClpXP protease, proteolytic subunit ClpP [Campylobacter lari RM2100] Length = 196 Score = 48.1 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D ++ ++ + +D + + ++SPGG +G +I+ + +K Sbjct: 30 IIMLSGEINDDLAASIVAQLLFLEAEDPQKDIYLYINSPGGVVTSGFSIYDTMNYIKADV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A A S + L ++ Sbjct: 90 STICIGQAASMGAFLLSCGAPGKRFALPNSRIMIHQPLGGARGQATDIE----------- 138 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +++++ K +D + + Sbjct: 139 -------------------IQAKEILRLKAILNDILAKNTKQKLSKIEKDTDRDFFMSAI 179 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 180 EAKEYGLIDKV 190 >gi|29375364|ref|NP_814518.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus faecalis V583] gi|227517733|ref|ZP_03947782.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus faecalis TX0104] gi|229546606|ref|ZP_04435331.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus faecalis TX1322] gi|229548713|ref|ZP_04437438.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus faecalis ATCC 29200] gi|255971227|ref|ZP_05421813.1| peptidase S14 [Enterococcus faecalis T1] gi|255973850|ref|ZP_05424436.1| peptidase S14 [Enterococcus faecalis T2] gi|256617656|ref|ZP_05474502.1| peptidase S14 [Enterococcus faecalis ATCC 4200] gi|256761537|ref|ZP_05502117.1| peptidase S14 [Enterococcus faecalis T3] gi|256957363|ref|ZP_05561534.1| peptidase S14 [Enterococcus faecalis DS5] gi|256959901|ref|ZP_05564072.1| peptidase S14 [Enterococcus faecalis Merz96] gi|256964395|ref|ZP_05568566.1| peptidase S14 [Enterococcus faecalis HIP11704] gi|257083692|ref|ZP_05578053.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus faecalis Fly1] gi|257086127|ref|ZP_05580488.1| peptidase S14 [Enterococcus faecalis D6] gi|257089198|ref|ZP_05583559.1| peptidase S14 [Enterococcus faecalis CH188] gi|257415340|ref|ZP_05592334.1| peptidase S14 [Enterococcus faecalis AR01/DG] gi|257418377|ref|ZP_05595371.1| peptidase S14 [Enterococcus faecalis T11] gi|257421026|ref|ZP_05598016.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus faecalis X98] gi|293384732|ref|ZP_06630586.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis R712] gi|293387456|ref|ZP_06632008.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis S613] gi|294781490|ref|ZP_06746829.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis PC1.1] gi|300859735|ref|ZP_07105823.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TUSoD Ef11] gi|307269823|ref|ZP_07551153.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX4248] gi|307272582|ref|ZP_07553835.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0855] gi|307276252|ref|ZP_07557380.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX2134] gi|307284467|ref|ZP_07564629.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0860] gi|307289536|ref|ZP_07569481.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0109] gi|307296208|ref|ZP_07576036.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0411] gi|312900365|ref|ZP_07759676.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0470] gi|312904208|ref|ZP_07763370.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0635] gi|312908569|ref|ZP_07767512.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis DAPTO 512] gi|312910494|ref|ZP_07769339.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis DAPTO 516] gi|312951861|ref|ZP_07770750.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0102] gi|60389766|sp|Q837R0|CLPP_ENTFA RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|29342824|gb|AAO80588.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis V583] gi|227074814|gb|EEI12777.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus faecalis TX0104] gi|229306150|gb|EEN72146.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus faecalis ATCC 29200] gi|229308263|gb|EEN74250.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus faecalis TX1322] gi|255962245|gb|EET94721.1| peptidase S14 [Enterococcus faecalis T1] gi|255966722|gb|EET97344.1| peptidase S14 [Enterococcus faecalis T2] gi|256597183|gb|EEU16359.1| peptidase S14 [Enterococcus faecalis ATCC 4200] gi|256682788|gb|EEU22483.1| peptidase S14 [Enterococcus faecalis T3] gi|256947859|gb|EEU64491.1| peptidase S14 [Enterococcus faecalis DS5] gi|256950397|gb|EEU67029.1| peptidase S14 [Enterococcus faecalis Merz96] gi|256954891|gb|EEU71523.1| peptidase S14 [Enterococcus faecalis HIP11704] gi|256991722|gb|EEU79024.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus faecalis Fly1] gi|256994157|gb|EEU81459.1| peptidase S14 [Enterococcus faecalis D6] gi|256998010|gb|EEU84530.1| peptidase S14 [Enterococcus faecalis CH188] gi|257157168|gb|EEU87128.1| peptidase S14 [Enterococcus faecalis ARO1/DG] gi|257160205|gb|EEU90165.1| peptidase S14 [Enterococcus faecalis T11] gi|257162850|gb|EEU92810.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus faecalis X98] gi|291077982|gb|EFE15346.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis R712] gi|291083107|gb|EFE20070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis S613] gi|294451420|gb|EFG19883.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis PC1.1] gi|295114015|emb|CBL32652.1| ATP-dependent Clp protease proteolytic subunit ClpP [Enterococcus sp. 7L76] gi|300850553|gb|EFK78302.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TUSoD Ef11] gi|306496082|gb|EFM65664.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0411] gi|306499497|gb|EFM68869.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0109] gi|306503144|gb|EFM72398.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0860] gi|306507052|gb|EFM76194.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX2134] gi|306510867|gb|EFM79884.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0855] gi|306513933|gb|EFM82535.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX4248] gi|310625455|gb|EFQ08738.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis DAPTO 512] gi|310630159|gb|EFQ13442.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0102] gi|310632304|gb|EFQ15587.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0635] gi|311289190|gb|EFQ67746.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis DAPTO 516] gi|311292553|gb|EFQ71109.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0470] gi|315025732|gb|EFT37664.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX2137] gi|315029868|gb|EFT41800.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX4000] gi|315031465|gb|EFT43397.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0017] gi|315036148|gb|EFT48080.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0027] gi|315145272|gb|EFT89288.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX2141] gi|315148132|gb|EFT92148.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX4244] gi|315151531|gb|EFT95547.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0012] gi|315153193|gb|EFT97209.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0031] gi|315154911|gb|EFT98927.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0043] gi|315160005|gb|EFU04022.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0312] gi|315161970|gb|EFU05987.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0645] gi|315164639|gb|EFU08656.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX1302] gi|315166938|gb|EFU10955.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX1341] gi|315170665|gb|EFU14682.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX1342] gi|315174680|gb|EFU18697.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX1346] gi|315573467|gb|EFU85658.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0309B] gi|315578035|gb|EFU90226.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0630] gi|315581428|gb|EFU93619.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis TX0309A] gi|323479964|gb|ADX79403.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecalis 62] gi|327534358|gb|AEA93192.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus faecalis OG1RF] gi|329577643|gb|EGG59074.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Enterococcus faecalis TX1467] Length = 197 Score = 48.1 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 60/199 (30%), Gaps = 33/199 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D + +I ++ + DS + + ++SPGGS AG AIF + VK Sbjct: 29 IIMLSGPIDDNVANSVIAQLLFLDAQDSEKDIYLYINSPGGSVSAGLAIFDTMNFVKADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A + + L ++ Sbjct: 89 QTIVLGMAASMGSFLLTAGQKGKRFALPNAEIMIHQPLGGAQGQATEIEIAAR------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + +++E P + T Sbjct: 142 -----------------------HILDTRQRLNSILAERTGQPIEVIERDTDRDNYMTAE 178 Query: 217 EAKKVGLIDVVGGQEEVWQ 235 +AK+ GLID V Sbjct: 179 QAKEYGLIDEVMENSSALN 197 >gi|255565556|ref|XP_002523768.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis] gi|223536980|gb|EEF38617.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis] Length = 296 Score = 48.1 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ + + + L+SPGG AG AI+ +Q +++ Sbjct: 113 IVCINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPI 172 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ L + A + + + Y + I V Sbjct: 173 NTICLGQAASMASLLLAAGAKGERKSLPNATIMIHQPSGGYSGQAKDMTIHTKQIVRV-- 230 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + +L S+ D D + T Sbjct: 231 ----------------------------WDSLNQLYSKHTGQSVDVIQKNMDRDYFMTPE 262 Query: 217 EAKKVGLIDVVGG 229 EAK+ G+ID V Sbjct: 263 EAKEFGIIDEVID 275 >gi|194333703|ref|YP_002015563.1| hypothetical protein Paes_0871 [Prosthecochloris aestuarii DSM 271] gi|194311521|gb|ACF45916.1| protein of unknown function DUF107 [Prosthecochloris aestuarii DSM 271] Length = 444 Score = 48.1 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 90/276 (32%), Gaps = 29/276 (10%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERIS 61 FV+KKI + ++ L+V H ++ + I+++G I S + +R ++ Sbjct: 2 FVIKKISVFIFTVFVLFLSVTVTHKDVHGDNGQSVLYTISLQGSINPGSADFFDRAVSLA 61 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 DSA A++V L +PGG + + + ++++ + + + A + Sbjct: 62 IADSAHAVLVELDTPGGLVTS---LRQMVRRIMASSVPVIVYVAPRGAQAA-SAGALLTL 117 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 + ++ + +P + K+ M Q Sbjct: 118 ASHVAAMSPGTEIGAAHPV------------------------GLGGGESEKSGVMSQKA 153 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 V+ + L E P + + T EA + G+IDVV Sbjct: 154 VNDLAAFARSLAEERGRSPVWAEKAVRESIASTANEAFEAGVIDVVADDRTTLFKALEGR 213 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 V Q+ + + L++ P Sbjct: 214 VVQTADRSVTLSLVSAELRELSPTFQEQVLMKLADP 249 >gi|229018991|ref|ZP_04175833.1| Translocation-enhancing protein tepA [Bacillus cereus AH1273] gi|229025236|ref|ZP_04181658.1| Translocation-enhancing protein tepA [Bacillus cereus AH1272] gi|228736064|gb|EEL86637.1| Translocation-enhancing protein tepA [Bacillus cereus AH1272] gi|228742319|gb|EEL92477.1| Translocation-enhancing protein tepA [Bacillus cereus AH1273] Length = 249 Score = 48.1 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 25/190 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I +I I ++ L++ L++ GG AG AI + + + Sbjct: 70 EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASL--------------SKP 115 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + ++ + + + +L + V ++ Sbjct: 116 TVSLVLGGGHSIGVPIAVSTDYSFIAETATMTIHPIRLTGLVIGVP-----QTFEYLDKM 170 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + + F L+ N+ D G G +A K GLID VGG Sbjct: 171 QERVIRFVTKHSKVTEDRFKELMFAKGNLTRDI------GTNVIGGDAVKYGLIDDVGGI 224 Query: 231 EEVWQSLYAL 240 + L L Sbjct: 225 GGALRKLNEL 234 >gi|224081363|ref|XP_002306383.1| predicted protein [Populus trichocarpa] gi|118481948|gb|ABK92906.1| unknown [Populus trichocarpa] gi|222855832|gb|EEE93379.1| predicted protein [Populus trichocarpa] Length = 244 Score = 48.1 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ + + + L+SPGG AG AI+ +Q +++ Sbjct: 61 IVCINGPINDDTSNVVVAQLLFLESENPSKPIHMYLNSPGGHVTAGLAIYDTMQYIRSPV 120 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ L S A A + + Y L I V Sbjct: 121 NTICLGQAASMASLLLASGAKGERKALPNATIMIHQPSGGYSGQAKDLTIHTKQIVRV-- 178 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + +L + P D D + T Sbjct: 179 ----------------------------WDALNQLYCKHTGKPIDVIQKNMDRDYFMTPE 210 Query: 217 EAKKVGLIDVVGG 229 EAK+ G+ID V Sbjct: 211 EAKEFGIIDEVID 223 >gi|238028274|ref|YP_002912505.1| hypothetical protein bglu_1g27310 [Burkholderia glumae BGR1] gi|237877468|gb|ACR29801.1| Hypothetical protein bglu_1g27310 [Burkholderia glumae BGR1] Length = 366 Score = 48.1 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 70/192 (36%), Gaps = 39/192 (20%) Query: 41 IAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 I I G I D+++ R++ + SA +++V+++S GG + I+ +++ + Sbjct: 24 IRIYGDIGFWGTDAEQFAARLDEVGS--SAASIVVAVNSMGGDVFDAFTIYNLLRRYPGK 81 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 V +AASA L+ + IV +++ + L +L Sbjct: 82 --TTGRVDGIAASAASLLLMGCSQIVMPSNAMLMIHNPHTLAAGDEGELRRLAD------ 133 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215 ++ S+ + +E DK L D W T Sbjct: 134 ------------------------LLGSTSANMLTAYAERSGQTEDKVRELMDVETWLTA 169 Query: 216 AEAKKVGLIDVV 227 A+A ++G D + Sbjct: 170 AQAVELGFCDAI 181 >gi|256840555|ref|ZP_05546063.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737827|gb|EEU51153.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 459 Score = 48.1 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 96/263 (36%), Gaps = 27/263 (10%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALI 70 ++ L + ++ + I I+ +I+++ + + + +A A++ Sbjct: 4 LLTILTAIVLILAISLQSEAKEKSLIYTIDIKKEIDNTTWIYLHNGLSEAKQL-NADAIL 62 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + +++ GG + +++ AI + + PV + AASAG LIS A I + + +G Sbjct: 63 LHMNTYGGLLESADSMRTAI--LYSPIPVYVFIDNNAASAGALISIACKKIYMRKGANIG 120 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 + V+ Q P + + ++ + + + + Sbjct: 121 AATVVNQTGAALPDKYQSYMRSMIRSTAEAQGKDTLIQNGDTIYKWKRD----------- 169 Query: 191 RLVSESRNIPYDKTLVLSDGR---IWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSI 246 L++E+ L D T EA K G D + ++V Sbjct: 170 PLIAEAMVDDRVIVPNLIDSGKVLTLTSQEALKWGYCDGIAESPDQVITEYIG----CKD 225 Query: 247 RKIKDWNPPKNYWFCDLKNLSIS 269 +IK + P WF ++K +S Sbjct: 226 YEIKSYEP---SWFDNVKGFFMS 245 >gi|145640030|ref|ZP_01795627.1| putative Clp-like protease [Haemophilus influenzae PittII] gi|145270863|gb|EDK10783.1| putative Clp-like protease [Haemophilus influenzae PittII] Length = 680 Score = 48.1 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/254 (12%), Positives = 76/254 (29%), Gaps = 42/254 (16%) Query: 30 HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 ++ + A I+I +I + + ++ + + + + SPGG + G A Sbjct: 27 SIKAKANDTAEISIYDEIGFWGVSAASFAQDLKDCGN--NIKQINLHIHSPGGDVFDGIA 84 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+ ++ V + +AAS +I+ A N ++ E +++ Sbjct: 85 IYNLLKNHPAN--VTVYIDGLAASMASVIAMAGNEVIMPENAMMMIH------------- 129 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 ++ + ++ + + + ++ Sbjct: 130 -----KPWGIQGGDAEDMRKYADLLDKVE------------NTLIPAYASKTGKTPEELA 172 Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 + W G E + G D + S+ + ++ K K+ F Sbjct: 173 EMLSAETWLNGKECVEQGFADKLAEPLVAMASIKSRKLEDFENMPKAM---KDMLFKPQG 229 Query: 265 NLSISSLLEDTIPL 278 N S+ P Sbjct: 230 NAGASAPQATPTPA 243 >gi|242373003|ref|ZP_04818577.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus epidermidis M23864:W1] gi|242349329|gb|EES40930.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus epidermidis M23864:W1] Length = 195 Score = 48.1 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 62/192 (32%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + QI+D + ++ ++ + DS + + ++SPGGS AG AI+ IQ +K Sbjct: 29 IIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + V L ++ Sbjct: 89 QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + R+++E +K T Sbjct: 142 -----------------------HILKTREKLNRILAERTGQSIEKIQQDTDRDNFLTAE 178 Query: 217 EAKKVGLIDVVG 228 EAK GLID V Sbjct: 179 EAKSYGLIDEVM 190 >gi|205373589|ref|ZP_03226392.1| TepA [Bacillus coahuilensis m4-4] Length = 250 Score = 48.1 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 25/198 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ I ++ L+V L++ GG AG AI + + KP ++ V S Sbjct: 73 EHMIPQLVAIEQNPKIEGLLVILNTVGGDVEAGLAIAEMLASL--SKPTVSIVLGGGHSI 130 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 G I+ A + AET+ + V + ++ Sbjct: 131 GVPIATACDYSFIAETATMTIHPVRLTGLVIGVP-----------------QTFEYMDKM 173 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + V+ + + S F L+ N+ D G G +A K GL++ VGG Sbjct: 174 QDRVVKFVTGHSNISEEDFKDLMFAKGNLTRDI------GTNVVGDDAVKYGLMNEVGGL 227 Query: 231 EEVWQSLYALGVDQSIRK 248 + L L + Sbjct: 228 GAAMKKLNELIEQSKTEE 245 >gi|227529566|ref|ZP_03959615.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus vaginalis ATCC 49540] gi|227350525|gb|EEJ40816.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus vaginalis ATCC 49540] Length = 197 Score = 48.1 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 55/191 (28%), Gaps = 31/191 (16%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IED ++ ++ + DS + + ++SPGG +G AI+ + +K+ Sbjct: 29 IIMLSGPIEDDMANSIVAQLLFLDAQDSTKDIYLYINSPGGVVTSGMAIYDTMNFIKSDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ + S A S V Sbjct: 89 QTIVIGMAASMASVLVSSGAKGKRFGLPHSQVLIHQPSG--------------------- 127 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + + + +R+ D T E Sbjct: 128 GAQGQQTEIEIAATEILKTRKMINEILAKNSGQPIEKINRDTERD--------HYLTAQE 179 Query: 218 AKKVGLIDVVG 228 A GL+D + Sbjct: 180 AVDYGLLDGIM 190 >gi|163814155|ref|ZP_02205547.1| hypothetical protein COPEUT_00309 [Coprococcus eutactus ATCC 27759] gi|158450604|gb|EDP27599.1| hypothetical protein COPEUT_00309 [Coprococcus eutactus ATCC 27759] Length = 237 Score = 48.1 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 65/228 (28%), Gaps = 37/228 (16%) Query: 34 NSPHVARIAIRGQI------------EDSQELIERIERISRDDSATALIVSLSSPGGSAY 81 + ++ I G+I ++L+ + + ++V +++ GG Sbjct: 34 DDGYILLCGIYGEIEGHEKLPVGVKSTSYEDLLPAVAQAENCREIKGVLVLINTVGGDVE 93 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 +G AI + + + S ++ IV T +V I V Sbjct: 94 SGLAISEMFASLSKPVVTLVLGGGHSIGVPLATSGDASFIVPTATMVVHPIRTSTAVLGV 153 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 K + + + + + + D Sbjct: 154 KQNFEYIEKMQDRIIDFTVVHSDISHDDFKKYMFNTAELTKDV----------------- 196 Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 G + G EA + G+I GG + + LY L + KI Sbjct: 197 --------GSVLVGNEAVRAGIITASGGMADALKKLYDLINCINDSKI 236 >gi|291616549|ref|YP_003519291.1| ClpP [Pantoea ananatis LMG 20103] gi|291151579|gb|ADD76163.1| ClpP [Pantoea ananatis LMG 20103] gi|327392981|dbj|BAK10403.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pantoea ananatis AJ13355] Length = 218 Score = 48.1 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ ++ +K Sbjct: 53 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMKFIKPDV 112 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + S V L Y ++ Sbjct: 113 STICMGQACSMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 166 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++E ++ R + + Sbjct: 167 ------------------------ILKVKQRMNELMAEHTGKSLEEIERDTERDRFLSAS 202 Query: 217 EAKKVGLIDVVGGQEE 232 EA + GL+D + + Sbjct: 203 EAVEYGLVDSILTHRQ 218 >gi|154509334|ref|ZP_02044976.1| hypothetical protein ACTODO_01859 [Actinomyces odontolyticus ATCC 17982] gi|153798968|gb|EDN81388.1| hypothetical protein ACTODO_01859 [Actinomyces odontolyticus ATCC 17982] Length = 216 Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 61/198 (30%), Gaps = 33/198 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D + ++ ++ +D + + ++SPGGS AG AI+ +Q +K Sbjct: 43 IIWLGGEVRDENANVICAQLLLLAAEDPDRDIYLYINSPGGSVTAGMAIYDTMQYIKPDV 102 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A + V L Sbjct: 103 VTVGMGMAASMGQFLLTAGAPGKRYITPHTRVLLHQPLGGAGG----------------- 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + +++ D++ + + ++ D W T Sbjct: 146 -------------SATEIRINADLILGMKKELAAITASRTGKTVEQVEADGDRDHWFTAQ 192 Query: 217 EAKKVGLIDVVGGQEEVW 234 EA + G +D V + Sbjct: 193 EALEYGFVDRVIDSPQEI 210 >gi|225028438|ref|ZP_03717630.1| hypothetical protein EUBHAL_02712 [Eubacterium hallii DSM 3353] gi|224954236|gb|EEG35445.1| hypothetical protein EUBHAL_02712 [Eubacterium hallii DSM 3353] Length = 228 Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 70/221 (31%), Gaps = 43/221 (19%) Query: 32 EDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGS 79 H+ +++ G+IE + L+ + ++ + L + +++ GG Sbjct: 21 NGTGQHILFLSVIGEIEGHHLSSDRIKTTKYEHLLPLLTQVQDNQEIDGLFLLINTVGGD 80 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 G A I + +KP ++ V + S G +S A++ A T+ + V Sbjct: 81 CSCGLAAAEMIASI--KKPTVSLVIGDSHSIGVPLSVAADRTFIAPTATMILHPVRLNG- 137 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + + ++ V++SR Sbjct: 138 -------------------------TIIGAPQTFEYFRLIQDRIVTFVEAHTGVAKSRLE 172 Query: 200 PYDKTLVLSD---GRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 + G I G A + G+ID VGG E L Sbjct: 173 RMMIRQGMMVKDLGTILVGKMAVEEGIIDEVGGVSEALFWL 213 >gi|290969192|ref|ZP_06560717.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Megasphaera genomosp. type_1 str. 28L] gi|290780698|gb|EFD93301.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Megasphaera genomosp. type_1 str. 28L] Length = 200 Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + LI ++ + +D + + ++SPGG AG AI+ +Q +K Sbjct: 30 IIFLSGQVEDTMANSLIAQLLFLEAEDPDKDIYLYINSPGGVVTAGMAIYDTMQYIKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ L + A S V L ++ I V Sbjct: 90 STICVGSAASMASVLLAAGTKGKRFALPHSQVMIHQPLGGVQGQATDIEIHTREILRV-- 147 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 +++ P D T Sbjct: 148 ----------------------------RRELNGILAAHTGQPLDVIEKDTERDNFLTAE 179 Query: 217 EAKKVGLIDVV 227 +AK GLID + Sbjct: 180 DAKHYGLIDEI 190 >gi|227819365|ref|YP_002823336.1| nodulation competitiveness protein nfeD [Sinorhizobium fredii NGR234] gi|227338364|gb|ACP22583.1| possible nodulation competitiveness protein nfeD [Sinorhizobium fredii NGR234] Length = 455 Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 93/282 (32%), Gaps = 24/282 (8%) Query: 14 MLSLVTLTVVYFSWSSHVEDNSPHVA-RIAIRGQI--EDSQELIERIERISRDDSATALI 70 +L+LV + F+ + VA + + G I ++ +I ++R D ++ Sbjct: 4 ILTLVLFLLSAFALPISSVSAAERVALVLHVNGAISPATAEYVIRGLQRA-EDRGVALVV 62 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + + +PGG + I RAI + AASAG I AS++ A + + Sbjct: 63 LQMDTPGGLDTSMRDIIRAILDSSVPVASFVAPSGARAASAGTYILYASHVAAMAPGTNL 122 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 G+ + L + + P P + + + D+ + Sbjct: 123 GAATPIAIG-------GGLFGGDDESEKEKPADQGKPDVPKPPSSAGEAKLINDAVAYIR 175 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRK 248 +RN + + + + + A + ++D E++ + + V Sbjct: 176 GLAELRNRNADWAE-KAVREAASLSSPAAVREKVVDFTAVSIEDLLKQAHGRTVRIGQTD 234 Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + D L+ LL D + A+ Sbjct: 235 SR----------LDTTGLAAEDLLPDWRTRLLSVITDPNVAL 266 >gi|224475912|ref|YP_002633518.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus carnosus subsp. carnosus TM300] gi|254763800|sp|B9DJL4|CLPP_STACT RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|222420519|emb|CAL27333.1| putative ATP-dependent Clp protease proteolytic subunit [Staphylococcus carnosus subsp. carnosus TM300] Length = 194 Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 64/192 (33%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + ++ ++ + D+ + + ++SPGGS AG AI+ IQ +K Sbjct: 29 IIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + V L ++ Sbjct: 89 QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAT------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216 + + ++++E ++ +D T Sbjct: 142 -----------------------HILKTRAKLNKILAERTGQSIEQIEKDTDRDNFLTAD 178 Query: 217 EAKKVGLIDVVG 228 EAK+ GLID V Sbjct: 179 EAKEYGLIDEVM 190 >gi|153871192|ref|ZP_02000426.1| Peptidase S14, ClpP [Beggiatoa sp. PS] gi|152072341|gb|EDN69573.1| Peptidase S14, ClpP [Beggiatoa sp. PS] Length = 228 Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 64/209 (30%), Gaps = 33/209 (15%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED ++ ++ + ++ + + ++SPGGS AG AI+ +Q +K Sbjct: 48 VIFLVGPVEDYTANLVVAQLLFLESENPEKDIHLYINSPGGSVSAGLAIYDTMQFIKPDV 107 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S + L + +D Sbjct: 108 STLCIGQAASMGALLLSGGADKKRYCLPHSRIMIHQPLGGFQGQATDIDIHARE------ 161 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + ++++ P +K ++ + AE Sbjct: 162 ------------------------ILKVRERLNEILAKHSGQPLEKIQKDTERDNFMAAE 197 Query: 218 -AKKVGLIDVVGGQEEVWQSLYALGVDQS 245 A + GL+D V + + Sbjct: 198 TAVEYGLVDAVLSTRHALTAAATEEQTKE 226 >gi|296133921|ref|YP_003641168.1| protein of unknown function DUF107 [Thermincola sp. JR] gi|296032499|gb|ADG83267.1| protein of unknown function DUF107 [Thermincola potens JR] Length = 450 Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 95/286 (33%), Gaps = 37/286 (12%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-QELIERIERISRDD 64 ++ + V ++ L + S V + + I I+G+IE +ER + Sbjct: 10 RRFRRIAVYPLIILLGLALNLGSGPVFADQAKIVFIPIKGEIEPGMASFVERSLDKAEQM 69 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 A ++ + +PGG + + I I + P + ++ A SAG LI+ A+ I Sbjct: 70 GAKKVVFEIDTPGGLIDSAQRIKTRI--FNAQVPTVAFINGEAKSAGVLIALAAEEIYMT 127 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 + +G+ + P + + + + Sbjct: 128 PGTAIGAAEPVPNNPKI----------------------------LASWRSDLEEAAEAR 159 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVD 243 + + RN+ + + T +A ++G+ D + + + L Sbjct: 160 GRNPKIVAGMADRNVVIENIKEKGEILSLTAKKAVELGIADKIVPDKHALLTDLAQKDGV 219 Query: 244 QSIRKIKDWNP---PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 +++ P + W+ +S LL + L+ + G Sbjct: 220 --YYTAEEYRPGFGERLAWWIINPFISPILLLIGFVGLVMEAFTLG 263 >gi|167521860|ref|XP_001745268.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776226|gb|EDQ89846.1| predicted protein [Monosiga brevicollis MX1] Length = 209 Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G ++D+ ++ ++ + ++ + V ++SPGGS AG AI+ +Q ++ R Sbjct: 24 IVCLMGPVDDAMASTIVAQLLHLESENPDEPVSVYINSPGGSVTAGLAIYDTLQYIRPRI 83 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + A S + Sbjct: 84 TTVCSGQACSMGSLLLTAGSPGHRYALPNSRIMVHQPSGGARGQ---------------- 127 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + + + L + YD+ L R + Sbjct: 128 --------------ASDIAIHAEEILKLKTTINNLYAHHTGRTYDEIEAALDRDRFMSAQ 173 Query: 217 EAKKVGLIDVV 227 EAK GLID + Sbjct: 174 EAKDFGLIDQI 184 >gi|256854365|ref|ZP_05559729.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus faecalis T8] gi|256709925|gb|EEU24969.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus faecalis T8] Length = 196 Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 60/198 (30%), Gaps = 33/198 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D + +I ++ + DS + + ++SPGGS AG AIF + VK Sbjct: 29 IIMLSGPIDDNVANSVIAQLLFLDAQDSEKDIYLYINSPGGSVSAGLAIFDTMNFVKADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A + + L ++ Sbjct: 89 QTIVLGMAASMGSFLLTAGQKGKRFALPNAEIMIHQPLGGAQGQATEIEIAAR------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + +++E P + T Sbjct: 142 -----------------------HILDTRQRLNSILAERTGQPIEVIERDTDRDNYMTAE 178 Query: 217 EAKKVGLIDVVGGQEEVW 234 +AK+ GLID V Sbjct: 179 QAKEYGLIDEVMENSSAL 196 >gi|222528715|ref|YP_002572597.1| ATP-dependent Clp protease proteolytic subunit [Caldicellulosiruptor bescii DSM 6725] gi|312622971|ref|YP_004024584.1| ATP-dependent clp protease, proteolytic subunit clpp [Caldicellulosiruptor kronotskyensis 2002] gi|222455562|gb|ACM59824.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Caldicellulosiruptor bescii DSM 6725] gi|312203438|gb|ADQ46765.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Caldicellulosiruptor kronotskyensis 2002] Length = 195 Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I D ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 30 IVILSGEITDDIASLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGFAIYDTMQYIKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A S + L Sbjct: 90 STICVGLAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGVRGQ---------------- 133 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +++ + + + +++SE P + +D + T Sbjct: 134 --------------ATDIKIHAEWILKIKNRINKILSERTGQPIEVIERDTDRDFFMTAE 179 Query: 217 EAKKVGLIDVV 227 EA K G+ID V Sbjct: 180 EALKYGIIDKV 190 >gi|239917500|ref|YP_002957058.1| ATP-dependent Clp protease proteolytic subunit ClpP [Micrococcus luteus NCTC 2665] gi|281414010|ref|ZP_06245752.1| ATP-dependent Clp protease proteolytic subunit ClpP [Micrococcus luteus NCTC 2665] gi|289705667|ref|ZP_06502052.1| Clp protease [Micrococcus luteus SK58] gi|239838707|gb|ACS30504.1| ATP-dependent Clp protease proteolytic subunit ClpP [Micrococcus luteus NCTC 2665] gi|289557615|gb|EFD50921.1| Clp protease [Micrococcus luteus SK58] Length = 221 Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 61/181 (33%), Gaps = 30/181 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + DS + + ++SPGGS A AI+ +Q ++ + + Sbjct: 59 ASADDVMAQLLVLEAMDSERDITLYINSPGGSFTAMTAIYDTMQFIRPEVQTVCLGQAAS 118 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + A +A + V Q Sbjct: 119 AAAVLLAAGAPGKRLALPNARVLIHQPAMQGDRG-------------------------- 152 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226 +++ ++ W ++ N ++ + + + +A + GL+D Sbjct: 153 ---TATDLEIHAQEINRMRVWMEETLASLTNRTPEEVSQDIDRDKFLSAEQALEYGLVDE 209 Query: 227 V 227 V Sbjct: 210 V 210 >gi|229828941|ref|ZP_04455010.1| hypothetical protein GCWU000342_01026 [Shuttleworthia satelles DSM 14600] gi|229792104|gb|EEP28218.1| hypothetical protein GCWU000342_01026 [Shuttleworthia satelles DSM 14600] Length = 224 Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 80/253 (31%), Gaps = 58/253 (22%) Query: 34 NSPHVARIAIRGQIEDSQE----------------LIERIERISRDDSATALIVSLSSPG 77 VA+I I+G I +E ++ ++E S + + + ++S G Sbjct: 6 KEEKVAKIEIKGAIVPDEEAWIYEYFGEKCTSPSAVLRQLEEASGEK----VDIDINSAG 61 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G+ +A I+ AIQ + V V +AASA +I+CA + ++ Sbjct: 62 GNVFAASEIYAAIQ--GYKGDVKIHVVGLAASAASMIACAGKSDITRTAQMMVH------ 113 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 ++ + + + + V++S Sbjct: 114 -------------NVSAYTAGDYRDMNHASEVLKQANR-----------AIAEAYVAKS- 148 Query: 198 NIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQE----EVWQSLYALGVDQSIRKIKDW 252 + L L D W T +A GLID + G+ E + + G I+ Sbjct: 149 GMSEKDALDLMDAETWITAQDAVDYGLIDEIAGESSKEIEPVALVASGGELIQASVIRKM 208 Query: 253 NPPKNYWFCDLKN 265 K Sbjct: 209 QERKENLLAYFAK 221 >gi|320540337|ref|ZP_08039989.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Serratia symbiotica str. Tucson] gi|320029657|gb|EFW11684.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Serratia symbiotica str. Tucson] Length = 207 Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + + + + ++SPGG AG +I+ ++ +K Sbjct: 42 IIFLTGQVEDHMANLIVAQMLFLEAESPEKDIFLYINSPGGVITAGMSIYDTMKFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A + S V L Y ++ Sbjct: 102 STICMGQACSMGSFLLTAGAKSKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++E + R T Sbjct: 156 ------------------------ILKVKARMNELMAEHTGQSLAQIECDTERDRFMTAD 191 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 192 EAVEYGLVDGILT 204 >gi|311107958|ref|YP_003980811.1| NfeD-like family protein 2 [Achromobacter xylosoxidans A8] gi|310762647|gb|ADP18096.1| NfeD-like family protein 2 [Achromobacter xylosoxidans A8] Length = 481 Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 75/209 (35%), Gaps = 11/209 (5%) Query: 38 VARI-AIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 VA + ++ G + + +I +E + +A A+++ + +PGG + I RAI Sbjct: 46 VAVVLSLDGIVGPATADYVIRGLEAARQ-QNAAAVVLRIDTPGGLDASMRDIIRAILASP 104 Query: 95 -NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + AASAG I AS++ A + +G+ + D Sbjct: 105 VPVISYVAPNGARAASAGTYILYASHVAAMAPATNLGAATPIALGGSPSRPADSPSGPAD 164 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 P + +P + + + + D V RN + + + Sbjct: 165 PADKKPPADKTAPAAPKDAGEAKAINDAVAYIRSLAALR---GRNADWAE-QAVRAAASL 220 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 T EA+ +ID++ ++V L Sbjct: 221 TAGEARAQNVIDLIA--DDVPDLLAKADG 247 >gi|329296782|ref|ZP_08254118.1| ClpP [Plautia stali symbiont] Length = 207 Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ ++ +K Sbjct: 42 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMKFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + S V L Y ++ Sbjct: 102 STICMGQACSMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++E ++ R + + Sbjct: 156 ------------------------ILKVKQRMNELMAEHTGKSLEQIERDTERDRFLSAS 191 Query: 217 EAKKVGLIDVVGGQEE 232 EA + GL+D + + Sbjct: 192 EAVEYGLVDSILTHRQ 207 >gi|296273946|ref|YP_003656577.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arcobacter nitrofigilis DSM 7299] gi|296098120|gb|ADG94070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arcobacter nitrofigilis DSM 7299] Length = 194 Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + ++ ++ + +D + + ++SPGG +G +I+ + +K Sbjct: 29 IIMLSGEINDPVASTIVAQLLFLEAEDPDKDIYLYINSPGGVITSGMSIYDTMNYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S + S V Sbjct: 89 CTICIGQAASMGAFLLSSGVKGKRYSLPNSRVMIHQPSGGAQGQST-------------- 134 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +Q+ + ++++E P +D + + Sbjct: 135 ----------------DIQIQAKEIQRMKDTLNKMIAEQTGQPIKVIEKDTDRDNFMSAE 178 Query: 217 EAKKVGLIDVVGG 229 EA K GLID V Sbjct: 179 EACKYGLIDEVIT 191 >gi|187935559|ref|YP_001887076.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum B str. Eklund 17B] gi|226706444|sp|B2TPB9|CLPP_CLOBB RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|187723712|gb|ACD24933.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum B str. Eklund 17B] Length = 199 Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 67/196 (34%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IIMLSGEVNDDSSNLIVSQLLFLESEDPDKDISIYINSPGGSITAGMAIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S A+ A + + L + + I +K Sbjct: 89 STICVGMAASMGAFLLSSGANGKRYALPNAEIMIHQPLGGFQGQATDIQIHANRILKIKE 148 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 S K SE+ N P + + T Sbjct: 149 SLNKIL------------------------------SENTNQPLEVIEADVERDNFMTAD 178 Query: 217 EAKKVGLIDVVGGQEE 232 EAK GL+D V + E Sbjct: 179 EAKTYGLVDKVITKNE 194 >gi|304390288|ref|ZP_07372241.1| protease subunit of ATP-dependent Clp protease family protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326044|gb|EFL93289.1| protease subunit of ATP-dependent Clp protease family protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 290 Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 64/210 (30%), Gaps = 37/210 (17%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSA 80 + + ++ V + I G I + ++ I + + + + L+SPGG Sbjct: 8 LTPEPSTDPDADAVRVLRISGTIAEESWFDDDITPSIFASELNAGSGPVTIWLNSPGGDV 67 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 A I+ + + V + +AASA +I+ A++ + + S++ Sbjct: 68 VAAAQIYNMLIDYPS--HVTVNIDGIAASAASVIAMAASTVAMSPVSMLMIHNPATMAVG 125 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 K L + + SV + E + Sbjct: 126 DKDELARAMSMLDSV------------------------------KESILNAYQEKTGMS 155 Query: 201 YDKTLVLSDGRIWT-GAEAKKVGLIDVVGG 229 K L D W A +G D + Sbjct: 156 RAKLSKLMDAETWMDARAAIDMGFADELLT 185 >gi|224824117|ref|ZP_03697225.1| protein of unknown function DUF107 [Lutiella nitroferrum 2002] gi|224603536|gb|EEG09711.1| protein of unknown function DUF107 [Lutiella nitroferrum 2002] Length = 459 Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 65/234 (27%), Gaps = 12/234 (5%) Query: 14 MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIV 71 + ++ + + + P V I + G I + + + R + + A +++ Sbjct: 4 LWHIIMIWLGLLLGGATAATPQPPVMLIPLTGAIGPVGADHVTRSLARAEK-EGAQLVVL 62 Query: 72 SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 + +PGG + I +AI A++ ++ I A Sbjct: 63 QMDTPGGLDTSMRQIIKAILASPVPVASFVAPSGARAASAGTYILYASHIAAMAPGTNVG 122 Query: 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 Q ++ E + + ++R Sbjct: 123 AATPIQIGITGAQPEQPSAR------GGKSGSSDAALEQGGSTQDTLTHKQINDAAAYIR 176 Query: 192 LVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 +++ R + + + EA +ID +V L L + Sbjct: 177 GLAQLRGRDVAWGEQAVREAVSLSADEALARNVID--LTARDVPDLLVKLQGRK 228 >gi|256848088|ref|ZP_05553532.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus coleohominis 101-4-CHN] gi|256715148|gb|EEU30125.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus coleohominis 101-4-CHN] Length = 197 Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 59/192 (30%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IED ++ ++ + DS + + ++SPGG +G AI+ + +K Sbjct: 29 IIMLSGPIEDDMANSIVAQLLFLDAQDSTKDIYLYINSPGGVVTSGMAIYDTMNFIKADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ + S A S V + ++ Sbjct: 89 QTIVIGMAASMASVLVSSGAKGKRFGLPHSQVLIHQPSGGAQGQQTEIEIAATE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + +++E+ P +K T Sbjct: 143 ------------------------ILKTRKMINEILAENSGQPIEKINQDTERDHYLTAQ 178 Query: 217 EAKKVGLIDVVG 228 EA GL+D + Sbjct: 179 EAVDYGLLDGIM 190 >gi|284161288|ref|YP_003399911.1| hypothetical protein Arcpr_0167 [Archaeoglobus profundus DSM 5631] gi|284011285|gb|ADB57238.1| protein of unknown function DUF107 [Archaeoglobus profundus DSM 5631] Length = 416 Score = 47.3 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 52/235 (22%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-EDSQELIERIERISRDDSAT 67 KT V+L + + I I+G+I + + EL+ + ++ ++A Sbjct: 3 KTLLVILIFIFAI----------PQAKALIVEIDIKGEINQGTVELVRQGFDLAMRENAQ 52 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 A+++ L +PGG + + I I +ASAG +I + +I A + Sbjct: 53 AVLIVLDTPGGLLSSTKEIVSTIMNSGIPVITYVPKGAFSASAGTIILLSGHISAMANGT 112 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYH 187 +GS + ++ + + V S Sbjct: 113 SLGSATPVG---------------------------------LSEEEKNKTINYVASYLE 139 Query: 188 WFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 ++E+R P + +++G T EA + G+ID++ E L+ Sbjct: 140 S----IAEARGRPKEIVKKFVTEGISLTAREAYEKGVIDILADSRE---ELFEKA 187 >gi|307544936|ref|YP_003897415.1| ATP-dependent Clp protease proteolytic subunit [Halomonas elongata DSM 2581] gi|307216960|emb|CBV42230.1| ATP-dependent Clp protease proteolytic subunit [Halomonas elongata DSM 2581] Length = 206 Score = 47.3 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED L+ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 39 VIFLVGPVEDYTANLLVAQLLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 98 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S + L Y ++ I + Sbjct: 99 STVCIGQAASMGALLLAGGAHGKRYCLPNSRMMIHQPLGGYQGQASDIEIHTREILGI-- 156 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + ++ +++ GA+ Sbjct: 157 -----------------RERLNQILAHHTGQKFETIAK----------DTDRDNFMNGAQ 189 Query: 218 AKKVGLIDVVGG 229 A + GLID V Sbjct: 190 AAEYGLIDAVLD 201 >gi|302817596|ref|XP_002990473.1| hypothetical protein SELMODRAFT_131898 [Selaginella moellendorffii] gi|300141641|gb|EFJ08350.1| hypothetical protein SELMODRAFT_131898 [Selaginella moellendorffii] Length = 253 Score = 47.3 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ + + ++SPGG AG AI+ +Q +++ Sbjct: 55 IVCIHGPIADDTASLVVAQLLYLESENPLKPIHLYINSPGGVVTAGLAIYDTMQYIRSPV 114 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A++ + A+ + + V + + + + Sbjct: 115 STLCVG---QAASMGSLLLAAGEPGQRRSLPNARVMVHQPSGGASGQASDIAIQAREI-- 169 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 +L ++ +K + + Sbjct: 170 -------------------------LDMRSRLNKLYAKHTGSSIEKIDQSMERDHFMSPE 204 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 205 EAKEFGLIDEV 215 >gi|77465659|ref|YP_355162.1| periplasmic serine protease (ClpP class) [Rhodobacter sphaeroides 2.4.1] gi|77390077|gb|ABA81261.1| Periplasmic serine proteases (ClpP class) [Rhodobacter sphaeroides 2.4.1] Length = 305 Score = 47.3 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 80/223 (35%), Gaps = 24/223 (10%) Query: 39 ARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 A + +RG + + L E + ++ + A A+++ + SPGG EA Sbjct: 61 AVVPVRGILTPNMAQYERWFGWATYHGLAETMAHLAASEDAAAIVLEIDSPGGLVCGIEA 120 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 AI KPV V +AASA Y ++ ++ IV ++ GSIGV + Sbjct: 121 AAEAIAAAAAVKPVHALVSPLAASAAYWLASQASEIVMTPGAVAGSIGV---ALTAAAHV 177 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204 + + S A +Q +D + F VS R IP + Sbjct: 178 QPGANGAQIFEMSSRHARAKRPDASTEAGRAELQRSLDEAEAAFHAAVSAGRAIPAAELA 237 Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 G + EA + GL D + + + L A Sbjct: 238 ARLSVTDDPQDGGATFRAPEAIRRGLADRIETRAAFYARLAAR 280 >gi|295395010|ref|ZP_06805222.1| ATP-dependent Clp protease proteolytic subunit [Brevibacterium mcbrellneri ATCC 49030] gi|294972169|gb|EFG48032.1| ATP-dependent Clp protease proteolytic subunit [Brevibacterium mcbrellneri ATCC 49030] Length = 215 Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 61/184 (33%), Gaps = 27/184 (14%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D + + ++SPGGS A AI+ +Q +K + + Sbjct: 55 TSADDVMAQLLVLESQDPDRDITLYINSPGGSFTALTAIYDTMQYIKPEIQTVCLGQAAS 114 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + A +A + V Q D + + ++ Sbjct: 115 AAAVLLAAGAPGKRLALPNARVLIHQPAMQGQGQGQASDLEIQANEVLRM---------- 164 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 + +++ + + VS + T EAK GL+D V Sbjct: 165 -------RRWLEETLAKHSNKSADEVS----------NDIERDLFLTAEEAKNYGLVDQV 207 Query: 228 GGQE 231 Sbjct: 208 LSSR 211 >gi|269102625|ref|ZP_06155322.1| ATP-dependent protease [Photobacterium damselae subsp. damselae CIP 102761] gi|268162523|gb|EEZ41019.1| ATP-dependent protease [Photobacterium damselae subsp. damselae CIP 102761] Length = 658 Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 67/218 (30%), Gaps = 41/218 (18%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ----ELIERIERISRDDSATALIVSLSSPGGSAY 81 SW + ++ I G I + +LI+ ++ I D + + S GGS Y Sbjct: 7 SWFTLTNQGDDQPVKVWIHGDIGSYEIAAIDLIKALQSIGSQD----VHFRIQSYGGSVY 62 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 G A++ AI+ + + V + AS A + + E + + Sbjct: 63 EGLAMYNAIKAH--KGKTVGIVDGLVASISSYFLMACDEVHMPENAKLMIHDPAIGAWGG 120 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 + L+ + ++ E Sbjct: 121 EDELESALTQ------------------------------LKNAKQTIAEAYVERSGQSL 150 Query: 202 DKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 D ++ +T ++A + GLID V ++ L Sbjct: 151 DDVLEAMAKETWFTASQALEFGLIDQVIDAVDLSNCLK 188 >gi|254507754|ref|ZP_05119885.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio parahaemolyticus 16] gi|219549279|gb|EED26273.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio parahaemolyticus 16] Length = 208 Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + I ++K Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQ 161 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K L++E P + Sbjct: 162 KLNK------------------------------LLAEHTGQPLEVIERDTDRDNFMAAE 191 Query: 217 EAKKVGLIDVV 227 +A + GL+D V Sbjct: 192 QAVEYGLVDAV 202 >gi|65321281|ref|ZP_00394240.1| COG0740: Protease subunit of ATP-dependent Clp proteases [Bacillus anthracis str. A2012] gi|167633728|ref|ZP_02392052.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. A0442] gi|170688767|ref|ZP_02879971.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. A0465] gi|170705747|ref|ZP_02896210.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. A0389] gi|177654334|ref|ZP_02936263.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. A0174] gi|190566076|ref|ZP_03018995.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis Tsiankovskii-I] gi|227813139|ref|YP_002813148.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. CDC 684] gi|229601615|ref|YP_002868186.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. A0248] gi|167531134|gb|EDR93821.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. A0442] gi|170129287|gb|EDS98151.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. A0389] gi|170667283|gb|EDT18042.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. A0465] gi|172080824|gb|EDT65905.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. A0174] gi|190562995|gb|EDV16961.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis Tsiankovskii-I] gi|227002833|gb|ACP12576.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. CDC 684] gi|229266023|gb|ACQ47660.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. A0248] Length = 240 Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 79/256 (30%), Gaps = 50/256 (19%) Query: 31 VEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSA 80 + A + I G+I S ++ + D + + ++SPGGS Sbjct: 2 KASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDD--IKTINLYINSPGGSV 59 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + AI +Q+ + +I+ + + AS ++ S+ I+ S++ + Y Sbjct: 60 FETMAIIAMLQRHHAK--IISYIDGIGASCASVLPMISDKIIMYANSMMMIHN---AWTY 114 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 D+L + ++ + L + Sbjct: 115 ASGNADQLRKAADDIE-------------------------RINQSMVQHYLTRAGDKLD 149 Query: 201 YDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 D L D W + EA GL D + L + +K++ Sbjct: 150 EDTLKQLLDAETWLSAEEAMGYGLCDEIIPANNATACL-------DEKWMKEYKNIPQQL 202 Query: 260 FCDLKNLSISSLLEDT 275 N+S + +LE Sbjct: 203 VNAQANISSNEMLERQ 218 >gi|289621889|emb|CBI51800.1| putative ATP-dependent Clp protease, proteolytic subunit [Sordaria macrospora] Length = 225 Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 67/209 (32%), Gaps = 46/209 (22%) Query: 41 IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 + + G I+D S ++ ++ + D+ + + ++SPGG +G AI+ + +K+ Sbjct: 57 LCLNGAIDDTTSAAIVAQLLWLESDNPDKPITMYINSPGGEVSSGLAIYDTMTYIKSPVS 116 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 + + +A LI A S V + ++K+ S + Sbjct: 117 TVCVGAAASMAAVLLIGGEPGKRYALPHSTVMIQRIR-------EQINKIVQSHINKSFG 169 Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEA 218 K + + S++ + T EA Sbjct: 170 YEKYDLAAISDMMERDKY------------------------------------LTAEEA 193 Query: 219 KKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 ++G++D + + V D Sbjct: 194 VELGVVDQILDRR-VKDEAEKKAKDGETP 221 >gi|212224206|ref|YP_002307442.1| nodulation protein nfeD [Thermococcus onnurineus NA1] gi|212009163|gb|ACJ16545.1| nodulation protein nfeD [Thermococcus onnurineus NA1] Length = 441 Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 5/119 (4%) Query: 11 RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATA 68 + ++ +V + V F S+H + V I G I + I + +A+A Sbjct: 2 KLKIVLIVLILFVTFFPSAHAQ--GNTVYVAKIDGMITGYTVDQFDRYISEAEK-ANASA 58 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +I+ L++PGG A A + I IQ K + A++ + ++A Sbjct: 59 IIIELNTPGGRADAMQEIVMRIQNAKVPVIIYVYPSGGMAASAGTYIALGSHLIAMAPG 117 >gi|86147046|ref|ZP_01065363.1| hypothetical membrane protein [Vibrio sp. MED222] gi|85835111|gb|EAQ53252.1| hypothetical membrane protein [Vibrio sp. MED222] Length = 468 Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 81/249 (32%), Gaps = 24/249 (9%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIE 58 M F+LK + ++ S V + V I + G I S L IE Sbjct: 1 MTFILKYLFAFLLLF-------------SSVFAQADDVWVIEVNGGIGPATSDYLTREIE 47 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCA 117 + D+ A +I+ +++PGG + I R+I + AASAG I A Sbjct: 48 QA-HDEQAKLIILKMNTPGGLDSSMRDIIRSITTSPIPIATWVGPAGSRAASAGTYILLA 106 Query: 118 SNIIVAAETSLVGSIGVL----FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 S+I A + +G+ + + P + + S+ Sbjct: 107 SHIASMAPGTNLGAATPVSLGGGKAPASPLSPQDDANKDDNTSAGEQDETKQENSDQVKA 166 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 M + V++ + + V L + + A + +ID + Sbjct: 167 TTAMEKKVINDAAAYIVSLAKLHNRNEEWAEKAVREAASLDSENALTLNVIDSIASD--- 223 Query: 234 WQSLYALGV 242 Q L L Sbjct: 224 LQQLVELSN 232 >gi|294083692|ref|YP_003550449.1| protease subunit of ATP-dependent Clp protease [Candidatus Puniceispirillum marinum IMCC1322] gi|292663264|gb|ADE38365.1| Protease subunit of ATP-dependent Clp protease [Candidatus Puniceispirillum marinum IMCC1322] Length = 216 Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 20/191 (10%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G ++D+ + ++ + ++ + + ++SPGG +G AI+ ++ ++ Sbjct: 43 IIFLNGPVDDTTASLVCSQLLFLESENPTKDISMYINSPGGIVTSGLAIYDTMEYIRPDV 102 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L++ A+ + + + + + ++ Sbjct: 103 STVCMGQAASMGSLLLMAGAAGKRYSLPNARIMTHQPSGGFSGQASDIEIHARE------ 156 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + + + + T Sbjct: 157 ------------------------ILDLRKRLNGMYVKHTGKTLKDVEKIMERDTFMTAE 192 Query: 217 EAKKVGLIDVV 227 +A+K GLID V Sbjct: 193 DAQKFGLIDEV 203 >gi|309811146|ref|ZP_07704942.1| endopeptidase Clp [Dermacoccus sp. Ellin185] gi|308434876|gb|EFP58712.1| endopeptidase Clp [Dermacoccus sp. Ellin185] Length = 221 Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 61/187 (32%), Gaps = 30/187 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++I ++ + D +++ ++SPGGS A AI+ +Q ++ + Sbjct: 60 ASADDIIAQLIVLESQDPDRDIVMYINSPGGSFTALTAIYDTMQYIRPDVHTFVLGQAAS 119 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + A A + V + + ++ + Sbjct: 120 AAAVLLGAGAPGKRYALPNARVLIHQPAMEGSGGQASDVEIQAN---------------- 163 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226 + W +++ ++ + +I T AK+ GLID Sbjct: 164 -------------EIMRMREWLEETLAKHSGRSIEQVRADIDRDKILTAEMAKEYGLIDE 210 Query: 227 VGGQEEV 233 V + Sbjct: 211 VLTSRKA 217 >gi|108757731|ref|YP_634562.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus xanthus DK 1622] gi|3023519|sp|O30612|CLPP2_MYXXD RecName: Full=ATP-dependent Clp protease proteolytic subunit 2; AltName: Full=Endopeptidase Clp 2 gi|2384690|gb|AAB97819.1| proteosome major subunit [Myxococcus xanthus DK 1622] gi|108461611|gb|ABF86796.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Myxococcus xanthus DK 1622] Length = 203 Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 62/184 (33%), Gaps = 31/184 (16%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGGS AG AI+ +Q VK I + A Sbjct: 43 IVAQLLFLESEDPDKGINLYINSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGALL 102 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L++ A A S + L +D Sbjct: 103 LLAGAKGKRYALPNSRIMIHQPLGGAQGQATDID-------------------------- 136 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQE 231 + + + L+ + ++ ++ + + +A++ GLID V ++ Sbjct: 137 ----IQAKEILRLRSYINGLIVKHTGHTIERIEKDTERDYFMSAEDARQYGLIDEVVEKQ 192 Query: 232 EVWQ 235 V Sbjct: 193 RVIA 196 >gi|218289882|ref|ZP_03494072.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alicyclobacillus acidocaldarius LAA1] gi|258511244|ref|YP_003184678.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218240022|gb|EED07208.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alicyclobacillus acidocaldarius LAA1] gi|257477970|gb|ACV58289.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 192 Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 65/194 (33%), Gaps = 33/194 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D ++ ++ ++ DD + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IIFLGTPIDDDVANAVVAQLLFLAADDPDKDIQMYINSPGGSVSAGLAIYDTMQHIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + +A L + A A S V L ++ Sbjct: 89 STMCVGMAASMAAVLLAAGAKGKRYALPNSEVMIHQPLGGARGQASDIE----------- 137 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + + R+++E P ++ + Sbjct: 138 -------------------IHARHILKTRERLNRILAERTGQPLERVAQDTDRDNFMSAE 178 Query: 217 EAKKVGLIDVVGGQ 230 EAK GLID V + Sbjct: 179 EAKAYGLIDEVIYR 192 >gi|15966977|ref|NP_387330.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium meliloti 1021] gi|307302445|ref|ZP_07582202.1| Endopeptidase Clp [Sinorhizobium meliloti BL225C] gi|307316225|ref|ZP_07595669.1| Endopeptidase Clp [Sinorhizobium meliloti AK83] gi|18202305|sp|P58277|CLPP1_RHIME RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; AltName: Full=Endopeptidase Clp 1 gi|15076250|emb|CAC47803.1| Probable ATP-dependent CLP protease proteolytic subunit [Sinorhizobium meliloti 1021] gi|306898065|gb|EFN28807.1| Endopeptidase Clp [Sinorhizobium meliloti AK83] gi|306903115|gb|EFN33705.1| Endopeptidase Clp [Sinorhizobium meliloti BL225C] Length = 205 Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 61/201 (30%), Gaps = 35/201 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D+ + ++ + + + + ++SPGG +G A++ ++ ++ Sbjct: 33 IIFLNGEVNDAVSALVCAQLLFLEAESPKKPIQLYINSPGGVVTSGFAMYDTMRYIRAPV 92 Query: 98 PVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 + S + A S++ L ++ Sbjct: 93 HTLCMGTARSMGSFLLMAGEAGERTALPNASILVHQPSGGFQGQASDMLIHAEEIRRT-- 150 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTG 215 H RL +E Y++ + R T Sbjct: 151 -----------------------------KHRMTRLYAEHCGRTYEEFERAMDRDRFMTA 181 Query: 216 AEAKKVGLIDVVGGQEEVWQS 236 EA + GLID + + E+ Sbjct: 182 EEALEWGLIDRIITEREIGAE 202 >gi|303229413|ref|ZP_07316203.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella atypica ACS-134-V-Col7a] gi|303231336|ref|ZP_07318070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella atypica ACS-049-V-Sch6] gi|302513932|gb|EFL55940.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella atypica ACS-049-V-Sch6] gi|302515949|gb|EFL57901.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella atypica ACS-134-V-Col7a] Length = 197 Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 59/195 (30%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D + +I ++ + +D + + ++SPGG AG AI+ +Q +K Sbjct: 28 IIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMQYIKPDV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A + V L ++ Sbjct: 88 STICVGSAASMGAVLLTAGAKGKRFALPHARVMIHQPLGGVQGQASEIEIHARE------ 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + +++ + + Sbjct: 142 ------------------------ILRMREELNGILAARSGQDIEVVARDTDRDNFMSAQ 177 Query: 217 EAKKVGLIDVVGGQE 231 +A + GLID V ++ Sbjct: 178 DAVEYGLIDEVLTRD 192 >gi|317047175|ref|YP_004114823.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea sp. At-9b] gi|316948792|gb|ADU68267.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea sp. At-9b] Length = 207 Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ ++ +K Sbjct: 42 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMKFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + S V L Y ++ Sbjct: 102 STICMGQACSMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++E ++ R + + Sbjct: 156 ------------------------ILKVKQRMNELMAEHTGKSLEQIERDTERDRFLSAS 191 Query: 217 EAKKVGLIDVVGGQEE 232 EA + GL+D + + Sbjct: 192 EAVEYGLVDSILTHRQ 207 >gi|160897495|ref|YP_001563077.1| ATP-dependent Clp protease proteolytic subunit [Delftia acidovorans SPH-1] gi|160363079|gb|ABX34692.1| Endopeptidase Clp [Delftia acidovorans SPH-1] Length = 201 Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 64/197 (32%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D+ + ++ + ++ + + ++SPGG +G A++ +Q +K+ Sbjct: 33 VIFLNGEVNDAVSALVCAQLLFLEAENPDKPIHLYINSPGGVITSGLAMYDTMQFIKSPV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + S+ + + + P + L + + Sbjct: 93 HTLC--------------------MGTARSMGSFLLMAGE-PGHRMALPNASLHVHQPLG 131 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + RL ++ Y++ L R T Sbjct: 132 GVQGQASDIRIHAEEMLR---------TKDRVTRLYAQHCGRSYEEVERDLDRDRFMTAE 182 Query: 217 EAKKVGLIDVVGGQEEV 233 EA++ GLID V + Sbjct: 183 EAREWGLIDKVLDRRTA 199 >gi|150398272|ref|YP_001328739.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium medicae WSM419] gi|150029787|gb|ABR61904.1| Endopeptidase Clp [Sinorhizobium medicae WSM419] Length = 205 Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 60/201 (29%), Gaps = 35/201 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D+ + ++ + + + + ++SPGG +G A++ ++ ++ Sbjct: 33 IIFLNGEVNDAVSALVCAQLLFLEAESPTKPIQLYINSPGGVVTSGFAMYDTMRYIRAPV 92 Query: 98 PVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 + S + A TS++ L ++ Sbjct: 93 HTLCMGTARSMGSFLLMAGEAGGRAALPNTSILVHQPSGGFQGQASDMLIHAEEIRRT-- 150 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTG 215 H RL +E Y++ + R T Sbjct: 151 -----------------------------KHRMTRLYAEHCGRTYEEFERAMDRDRFMTA 181 Query: 216 AEAKKVGLIDVVGGQEEVWQS 236 EA + GLID + + Sbjct: 182 EEALEWGLIDCILTERVAGAE 202 >gi|330508860|ref|YP_004385288.1| nodulation protein NfeD [Methanosaeta concilii GP-6] gi|328929668|gb|AEB69470.1| nodulation protein NfeD [Methanosaeta concilii GP-6] Length = 438 Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 77/214 (35%), Gaps = 10/214 (4%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIE 58 M ++ + +R + + L+ V+ + V + ++G I + + ++ +E Sbjct: 6 MNSRVRVMLSRILEIVLLLALVLG------QAQAAGTVLTVDMKGTITPASDDIVLAALE 59 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCA 117 R +D A AL++ L +PGG I R I + A SAG +I Sbjct: 60 RAEAED-ARALMLLLDTPGGGLAETTEILRLIDESDIPVIGYVHPEGAAAWSAGTIILIG 118 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 S+I A +++GS + P + ++ + + + Sbjct: 119 SDIAAMAPHTIIGSAQPVQFSPTGSTVPVNDSKTTNAIVAMIEEKARKHGRNTTAAREFV 178 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + ++ ++ V E ++ L +G Sbjct: 179 LSNLNLNADEAMKYRVVEHIAPTPEELLAQINGT 212 >gi|294790932|ref|ZP_06756090.1| Clp protease [Scardovia inopinata F0304] gi|294458829|gb|EFG27182.1| Clp protease [Scardovia inopinata F0304] Length = 216 Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 60/181 (33%), Gaps = 30/181 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D +++ ++SPGGS A AI+ +Q +K + + Sbjct: 60 ASADDIMAQLLVLESQDPDRDVVLYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 119 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + + + V + K Sbjct: 120 AAAILLAAGTKGKRLMLPNARVLIHQPAMGQDFGKA------------------------ 155 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226 +++ + W +++ ++ + I T +AK+ G++D Sbjct: 156 -----TEIEIQAKELLRMREWLENTLAKHTGQDVERIRKDIETDTILTAEQAKEYGMVDA 210 Query: 227 V 227 + Sbjct: 211 I 211 >gi|315501699|ref|YP_004080586.1| endopeptidase clp [Micromonospora sp. L5] gi|315408318|gb|ADU06435.1| Endopeptidase Clp [Micromonospora sp. L5] Length = 196 Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 62/186 (33%), Gaps = 31/186 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++ +I ++ +D+ + + ++SPGGS AG A++ ++ VKN + + Sbjct: 37 ASANQICAQILLLAAEDAERDIFLYINSPGGSVSAGMAVYDTMRYVKNDVATLALGMAGS 96 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 L + A+ A S + Sbjct: 97 MGQFLLCAGAAGKRFALPHSRIMMHQPSGGMGG--------------------------- 129 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226 + + + + L+++ ++ R +T +A++ GL+D Sbjct: 130 ---TAADITIQAENMLHVKRTMQELIAQHSGRTLEEIQRDWDRDRWFTAEQAREYGLVDQ 186 Query: 227 VGGQEE 232 V + + Sbjct: 187 VLTRVD 192 >gi|18420643|ref|NP_568427.1| NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7); serine-type endopeptidase [Arabidopsis thaliana] gi|75309225|sp|Q9FN42|CLPP2_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit 2, mitochondrial; AltName: Full=Endopeptidase ClpP2; AltName: Full=nClpP7; Flags: Precursor gi|9759372|dbj|BAB09831.1| ATP-dependent protease proteolytic subunit ClpP-like protein [Arabidopsis thaliana] gi|26452073|dbj|BAC43126.1| putative ATP-dependent protease proteolytic subunit ClpP [Arabidopsis thaliana] gi|28950803|gb|AAO63325.1| At5g23140 [Arabidopsis thaliana] gi|332005743|gb|AED93126.1| ATP-dependent Clp protease proteolytic subunit 2 [Arabidopsis thaliana] Length = 241 Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 66/212 (31%), Gaps = 35/212 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G I D ++ ++ + ++ + + + L+SPGG AG AI+ +Q +++ Sbjct: 58 IICINGPINDDTSHVVVAQLLYLESENPSKPIHMYLNSPGGHVTAGLAIYDTMQYIRSPI 117 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ L + A + + V Y Sbjct: 118 STICLGQAASMASLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQ---------------- 161 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 K + + + + L + P D + T Sbjct: 162 --------------AKDITIHTKQIVRVWDALNELYVKHTGQPLDVVANNMDRDHFMTPE 207 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 EAK G+ID V +E L V + Sbjct: 208 EAKAFGIIDEV--IDERPLELVKDAVGNESKD 237 >gi|297808311|ref|XP_002872039.1| hypothetical protein ARALYDRAFT_910322 [Arabidopsis lyrata subsp. lyrata] gi|297317876|gb|EFH48298.1| hypothetical protein ARALYDRAFT_910322 [Arabidopsis lyrata subsp. lyrata] Length = 237 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 66/212 (31%), Gaps = 35/212 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G I D ++ ++ + ++ + + + L+SPGG AG AI+ +Q +++ Sbjct: 54 IICINGPINDDTSHVVVAQLLYLESENPSKPIHMYLNSPGGHVTAGLAIYDTMQYIRSPI 113 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ L + A + + V Y Sbjct: 114 STICLGQAASMASLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQ---------------- 157 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 K + + + + L + P D + T Sbjct: 158 --------------AKDITIHTKQIVRVWDALNELYVKHTGQPLDVVANNMDRDHFMTPE 203 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 EAK G+ID V +E L V + Sbjct: 204 EAKAFGIIDEV--IDERPLELVKDAVGNESKD 233 >gi|217072528|gb|ACJ84624.1| unknown [Medicago truncatula] Length = 238 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ + + + L+SPGG+ AG AI+ +Q +++ Sbjct: 55 IVCINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSPI 114 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + + Y Sbjct: 115 NTICLGQAASMGSLLLCAGAKGQRRALPNATIMIHQPSGGYSGQ---------------- 158 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 K + + + + L + P D D + T Sbjct: 159 --------------AKDIAIHTKQIVRMWDALNELYVKHTGQPLDVIQKNMDRDYFMTAE 204 Query: 217 EAKKVGLIDVVGG 229 EAK+ G+ID V Sbjct: 205 EAKEFGIIDEVID 217 >gi|169824905|ref|YP_001692516.1| ATP-dependent protease Clp proteolytic subunit [Finegoldia magna ATCC 29328] gi|297587291|ref|ZP_06945936.1| ATP-dependent Clp protease proteolytic subunit [Finegoldia magna ATCC 53516] gi|302379561|ref|ZP_07268046.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Finegoldia magna ACS-171-V-Col3] gi|303234189|ref|ZP_07320835.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Finegoldia magna BVS033A4] gi|167831710|dbj|BAG08626.1| ATP-dependent protease Clp proteolytic subunit [Finegoldia magna ATCC 29328] gi|297575272|gb|EFH93991.1| ATP-dependent Clp protease proteolytic subunit [Finegoldia magna ATCC 53516] gi|302312468|gb|EFK94464.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Finegoldia magna ACS-171-V-Col3] gi|302494730|gb|EFL54490.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Finegoldia magna BVS033A4] Length = 195 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D + +I ++ + +D + + ++SPGGS AG AI+ +Q VK Sbjct: 30 IIFVTGEVNDQMADLVIAQLLFLESEDPKKDIQLYINSPGGSVSAGLAIYDTMQYVKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S A A + L ++ + Sbjct: 90 STICVGMAASMGAILLTSGAKGKRYALPNADTLIHQPLGGAQGQASDIEIHAKN------ 143 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + +++SE P +K I T Sbjct: 144 ------------------------ILKKRELLNKILSERTGQPLEKIERDTDRDFILTAE 179 Query: 217 EAKKVGLIDVVGG 229 EAK+ GLID V Sbjct: 180 EAKEYGLIDEVIY 192 >gi|116785036|gb|ABK23566.1| unknown [Picea sitchensis] Length = 243 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G IED ++ ++ + ++ A + + ++SPGG AG AI+ +Q +++ Sbjct: 59 IICINGVIEDDTAAVVVAQLLFLESENPAKPINLYINSPGGVVTAGLAIYDTMQYIRSPV 118 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A + + + Sbjct: 119 STFCMGQAASMGSLLLAAGAKGERRSLPNARIMIHQPSGGASGQ---------------- 162 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + L ++ DK + + Sbjct: 163 --------------ASDIAIQAKEILLTRDRLNSLYAKHTGQSIDKIEKCMERDMFMSPE 208 Query: 217 EAKKVGLIDVV 227 EAK+ GL+D V Sbjct: 209 EAKEFGLVDTV 219 >gi|126727090|ref|ZP_01742927.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodobacterales bacterium HTCC2150] gi|126703518|gb|EBA02614.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodobacterales bacterium HTCC2150] Length = 209 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 24/190 (12%), Positives = 59/190 (31%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D + ++ ++ + D+ + + ++SPGG +G +I+ +Q +K + Sbjct: 38 IIFVSGPVHDEMATTIVAQLLFLEADNPTKEIAMYINSPGGVVTSGLSIYDTMQYIKPKV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + S + Y Sbjct: 98 STVCIGQAASMGSLLLAAGEPGMRYSLPNSRIMVHQPSGGYQG----------------- 140 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + K + + ++ V L + E Sbjct: 141 --QATDIMIHAAETQKLKDRLNGIYVKHTGQTMKKV----------VDGLERDNFMSAEE 188 Query: 218 AKKVGLIDVV 227 AK GL+D + Sbjct: 189 AKSWGLVDEI 198 >gi|270261418|ref|ZP_06189691.1| ATP-dependent Clp protease proteolytic subunit 1 [Serratia odorifera 4Rx13] gi|270044902|gb|EFA17993.1| ATP-dependent Clp protease proteolytic subunit 1 [Serratia odorifera 4Rx13] Length = 197 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 65/191 (34%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D+ + + ++ + ++ + + ++SPGG+ +G AI+ ++ + + Sbjct: 33 IIFLNGEVNDAIAELVCAQLLFLEAENPEKPIHLYINSPGGAITSGFAIYDTMRFINAQV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + S+ + + + P + L + + Sbjct: 93 HTLC--------------------MGTARSMGSFLLMAGE-PGHRAALPNASLHVHQPLG 131 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216 F + +RL +E ++ + D R T Sbjct: 132 GFQGQASDIFIHAEEMRR---------TKDLVIRLYAEHCGHSAEEVEQVLDRDRFMTAD 182 Query: 217 EAKKVGLIDVV 227 EA + GL+D V Sbjct: 183 EAVEWGLVDRV 193 >gi|224094113|ref|XP_002310077.1| predicted protein [Populus trichocarpa] gi|222852980|gb|EEE90527.1| predicted protein [Populus trichocarpa] Length = 244 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I+D ++ ++ + ++ + + + L+SPGG AG AI+ +Q +++ Sbjct: 61 IVCINGPIDDDTSHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPV 120 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ L + A A + + Y + I V Sbjct: 121 TTICLGQAASMASLLLAAGAKGERKALPNATIMIHQPSGGYSGQAKDMTIHTKQIVRV-- 178 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + +L + P D D + T Sbjct: 179 ----------------------------WDALNQLYCKHTGQPLDVIQKNMDRDYFMTPE 210 Query: 217 EAKKVGLIDVVGG 229 EAK+ G+ID V Sbjct: 211 EAKEFGIIDDVID 223 >gi|302865150|ref|YP_003833787.1| endopeptidase Clp [Micromonospora aurantiaca ATCC 27029] gi|302568009|gb|ADL44211.1| Endopeptidase Clp [Micromonospora aurantiaca ATCC 27029] Length = 196 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 63/190 (33%), Gaps = 31/190 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++ +I ++ +D+ + + ++SPGGS AG A++ ++ VKN + + Sbjct: 37 ASANQICAQILLLAAEDAERDIFLYINSPGGSVSAGMAVYDTMRYVKNDVATLALGMAGS 96 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 L + A+ A S + Sbjct: 97 MGQFLLCAGAAGKRFALPHSRIMMHQPSGGMGG--------------------------- 129 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226 + + + + L+++ ++ R +T +A++ GL+D Sbjct: 130 ---TAADITIQAENMLHVKRTMQELIAQHSGRTLEEIQRDWDRDRWFTAEQAREYGLVDQ 186 Query: 227 VGGQEEVWQS 236 V + + + Sbjct: 187 VLTRVDQLAA 196 >gi|290894026|ref|ZP_06557000.1| serine protease [Listeria monocytogenes FSL J2-071] gi|290556370|gb|EFD89910.1| serine protease [Listeria monocytogenes FSL J2-071] Length = 235 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 37/208 (17%) Query: 39 ARIAIRGQIE----DSQELIERI--ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 A I I G+I D ++ + + + + + ++SPGG+ + G AI I+ Sbjct: 16 AEIYIYGEIVSFKWDEEDTTASSFQKDLKELGNIETINLHVNSPGGNVFEGIAISNMIKA 75 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 K + VI V +AAS +I ++ +V E S+ + L K + Sbjct: 76 HKAK--VIAYVDALAASIASVIVAGADKVVMYENSMQMIHNPTWNVSGNSTELRKHADDL 133 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 ++ L + +K + Sbjct: 134 DAIAQ----------------------------ASVLTYLSKAGDKLSEEKIKQIMAEET 165 Query: 213 W-TGAEAKKVGLIDVVGGQEEVWQSLYA 239 W + +A GL D + ++ + Sbjct: 166 WLSAKDALGHGLCDEILEANKIAAYVEG 193 >gi|227875044|ref|ZP_03993189.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mobiluncus mulieris ATCC 35243] gi|306817331|ref|ZP_07451076.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mobiluncus mulieris ATCC 35239] gi|227844322|gb|EEJ54486.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mobiluncus mulieris ATCC 35243] gi|304649772|gb|EFM47052.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mobiluncus mulieris ATCC 35239] Length = 292 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 64/210 (30%), Gaps = 37/210 (17%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSA 80 + + ++ V + I G I + ++ I + + + + L+SPGG Sbjct: 8 LTPEPSTDPDADAVRVLRISGTIAEESWFDDDITPSIFASELNAGSGPVTIWLNSPGGDV 67 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 A I+ + + V + +AASA +I+ A+ + + S++ Sbjct: 68 VAAAQIYNML--IDYPGEVTVNIDGIAASAASVIAMAATKVAMSPVSMLMIHNPATMAVG 125 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 K L + + SV + E N+ Sbjct: 126 DKDELARAMSMLDSV------------------------------KESILNAYQEKTNLS 155 Query: 201 YDKTLVLSDGRIWT-GAEAKKVGLIDVVGG 229 K L D W A +G D + Sbjct: 156 RAKLSKLMDAETWMDARAAIDMGFADELLT 185 >gi|163847092|ref|YP_001635136.1| endopeptidase Clp [Chloroflexus aurantiacus J-10-fl] gi|222524926|ref|YP_002569397.1| Endopeptidase Clp [Chloroflexus sp. Y-400-fl] gi|163668381|gb|ABY34747.1| Endopeptidase Clp [Chloroflexus aurantiacus J-10-fl] gi|222448805|gb|ACM53071.1| Endopeptidase Clp [Chloroflexus sp. Y-400-fl] Length = 221 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 70/200 (35%), Gaps = 34/200 (17%) Query: 40 RIAIRGQIEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 RI I G D Q ++ ++ + +D + + ++SPGGS AG I+ + ++ Sbjct: 52 RIVILGTPIDDQIANLIVAQLLFLESEDPDRDIWLYINSPGGSVTAGLGIYDTMHHIRPD 111 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 + + + L A + S +I Sbjct: 112 VATVCVGMAGSMATPILAGGAKGKRYSLPHS-----------------------TIHMHP 148 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215 + +P E+ + + L+++ P ++ D ++ T Sbjct: 149 AGGGARGYAPDVEIMARE-------LLRLQQLVRELLAKDTGQPIERIAKDFDRDLFMTP 201 Query: 216 AEAKKVGLIDVVGGQEEVWQ 235 +AK+ G+ID + +E+V + Sbjct: 202 EQAKEYGIIDEILTREDVKK 221 >gi|25028868|ref|NP_738922.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium efficiens YS-314] gi|259507930|ref|ZP_05750830.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Corynebacterium efficiens YS-314] gi|67460556|sp|Q8FN36|CLPP2_COREF RecName: Full=ATP-dependent Clp protease proteolytic subunit 2; AltName: Full=Endopeptidase Clp 2 gi|23494155|dbj|BAC19122.1| putative endopeptidase Clp chain P1 [Corynebacterium efficiens YS-314] gi|259164425|gb|EEW48979.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Corynebacterium efficiens YS-314] Length = 199 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 43 IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102 + +I + +L +I +S +D + + ++SPGGS AG AI+ ++ Sbjct: 36 VDDEIAN--KLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYDTMKYSPCDIATYGM 93 Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 + L A + + Sbjct: 94 GLAASMGQFLLSGGTPGKRYALPHARIMMHQPSAGVGG---------------------- 131 Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKV 221 + + + + +L++E +++ SD R +T +AK+ Sbjct: 132 --------TAADIAIQAEQFAQTKREMAKLIAEHTGQTFEQVTKDSDRDRWFTAEQAKEY 183 Query: 222 GLIDVVGGQEE 232 GL+D V E Sbjct: 184 GLVDHVITLAE 194 >gi|256556952|gb|ACU83574.1| ATP-dependent Clp protease subunit [uncultured bacterium HF130_AEPn_2] Length = 211 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 60/197 (30%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 45 VIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L + A S V L + ++ I + Sbjct: 105 STTCIGQACSMGAFLLTAGAEGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFI-- 162 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L+++ ++ + + Sbjct: 163 ----------------------------RERLNTLMAKHSGHTLEEIERDTNRDNFMSAE 194 Query: 217 EAKKVGLIDVVGGQEEV 233 A++ GLID V + Sbjct: 195 AAREYGLIDAVIDKRPA 211 >gi|227824397|ref|ZP_03989229.1| ATP-dependent Clp protease [Acidaminococcus sp. D21] gi|226904896|gb|EEH90814.1| ATP-dependent Clp protease [Acidaminococcus sp. D21] Length = 199 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+IED + ++ ++ + +D + + ++SPGGS AG AI+ +Q ++ Sbjct: 32 IIFVTGEIEDHMANLIVAQLLFLESEDPDKDIHLYINSPGGSVSAGLAIYDTMQYIRPDV 91 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ L + A A S V L ++ I V Sbjct: 92 STICVGMAASMASILLAAGAKGKRFALPHSRVMIHQPLGGAQGQATDIEIHAREILRV-- 149 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 ++++ + T Sbjct: 150 ----------------------------REEMNQILAAHTGKDPETIKLDTERDHYLTAD 181 Query: 217 EAKKVGLIDVV 227 EA GLID V Sbjct: 182 EALSYGLIDQV 192 >gi|242035957|ref|XP_002465373.1| hypothetical protein SORBIDRAFT_01g037430 [Sorghum bicolor] gi|241919227|gb|EER92371.1| hypothetical protein SORBIDRAFT_01g037430 [Sorghum bicolor] Length = 283 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I G +ED ++ ++ + D +I+ ++SPGGS AG AIF ++ ++ Sbjct: 108 IIRCGGPVEDDMANIIVAQLLYLDAIDPTKDIIMYVNSPGGSVTAGMAIFDTMKHIRPDV 167 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + + S + L + L+ + Sbjct: 168 STVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQANEM----- 222 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 ++ P DK + Sbjct: 223 -------------------------LHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAK 257 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 258 EAKEYGLIDGV 268 >gi|332557495|ref|ZP_08411817.1| Periplasmic serine protease [Rhodobacter sphaeroides WS8N] gi|332275207|gb|EGJ20522.1| Periplasmic serine protease [Rhodobacter sphaeroides WS8N] Length = 306 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 81/223 (36%), Gaps = 24/223 (10%) Query: 39 ARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 A + +RG + + L E ++ ++ + A A+++ + SPGG EA Sbjct: 62 AVVPVRGILTPNMAQYERWFGWATYHGLAETLDHLAASEDAAAIVLEIDSPGGLVTGIEA 121 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 AI KPV V +AASA Y ++ ++ IV ++ GSIGV + Sbjct: 122 AAEAIAAAAAVKPVHALVSPLAASAAYWLASQASEIVMTPGAVAGSIGV---ALTTAAHV 178 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204 + + S A +Q +D + F VS R IP + Sbjct: 179 QPGANGAQIFEMSSRHARAKRPDASTEAGRAELQRSLDEAEAAFHAAVSAGRAIPAAELA 238 Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 G + EA + GL D + ++ L A Sbjct: 239 ARLSVTDDPQDGGATFRAPEAIRRGLADRTETRAAFYERLTAR 281 >gi|261253459|ref|ZP_05946032.1| ATP-dependent Clp protease proteolytic subunit [Vibrio orientalis CIP 102891] gi|260936850|gb|EEX92839.1| ATP-dependent Clp protease proteolytic subunit [Vibrio orientalis CIP 102891] Length = 208 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + I ++K Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQ 161 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K L++E P + Sbjct: 162 KLNK------------------------------LLAEHTGQPLEVIERDTDRDNFMAAD 191 Query: 217 EAKKVGLIDVVGG 229 +A + GL+D V Sbjct: 192 QAVEYGLVDAVLT 204 >gi|260776382|ref|ZP_05885277.1| ATP-dependent Clp protease proteolytic subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260607605|gb|EEX33870.1| ATP-dependent Clp protease proteolytic subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 208 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + I ++K Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQ 161 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K L++E P + Sbjct: 162 KLNK------------------------------LLAEHTGQPLEVIERDTDRDNFMAAD 191 Query: 217 EAKKVGLIDVVGG 229 +A + GL+D V Sbjct: 192 QAVEYGLVDAVLT 204 >gi|251798425|ref|YP_003013156.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus sp. JDR-2] gi|247546051|gb|ACT03070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus sp. JDR-2] Length = 195 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 62/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D +I ++ ++ DD + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IIFLGSAIDDDVANSVIAQLLFLAADDPEKDIHLYINSPGGSVTAGMAIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + V L V+ + + + Sbjct: 89 STICMGMAASMGSLLLTAGAKGKRFALPNAEVMIHQPLG---GVRGQASDIKIHADWILK 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + K + E PY+K + Sbjct: 146 TKQK---------------------------LNEIYVERTGQPYEKIDRDTDRDNFMSAE 178 Query: 217 EAKKVGLIDVVGG 229 +A GLID V Sbjct: 179 DALNYGLIDKVIT 191 >gi|302389784|ref|YP_003825605.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermosediminibacter oceani DSM 16646] gi|302200412|gb|ADL07982.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermosediminibacter oceani DSM 16646] Length = 236 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 69/229 (30%), Gaps = 37/229 (16%) Query: 30 HVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPG 77 + ++ I I GQIE + +I ++ I ++ L+V L++ G Sbjct: 30 ELPKPESNIHCITIVGQIEGHLILPPQNKTTKYEHIIPQLVAIEQNPKIEGLLVILNTIG 89 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G AG A+ I + + ++ + + Sbjct: 90 GDVEAGLALAEIIAS--------------MTKPTVSLVLGGGHSIGVPIAVASDYSFIAE 135 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + +L + V + + + H + + R Sbjct: 136 TATMTIHPIRLTGLVIGVPQT-----------FEYLDKMQDRVIKFVVEHSKIEEETLRR 184 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 + L G + GA+A + GLI+ VGG + L L ++ Sbjct: 185 LMFNTGQLARDIGTVLVGADAVRYGLINEVGGLGAAVKKLEELISEKKK 233 >gi|94958239|gb|ABF47251.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus xylosus] Length = 194 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 65/192 (33%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + QI+D + ++ ++ + D+ + + ++SPGGS AG AI+ IQ +K Sbjct: 29 IIMLGSQIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + V L ++ Sbjct: 89 QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216 + + ++++E +K +D + Sbjct: 142 -----------------------HILKTRAKLNQILAERTGQSIEKIEKDTDRDNFLSAE 178 Query: 217 EAKKVGLIDVVG 228 EAK+ GL+D V Sbjct: 179 EAKEYGLVDQVM 190 >gi|308050308|ref|YP_003913874.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ferrimonas balearica DSM 9799] gi|307632498|gb|ADN76800.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ferrimonas balearica DSM 9799] Length = 207 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 62/200 (31%), Gaps = 33/200 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 38 VIFLTGPVEDHMANLVVAQLLFLESENPDKDIYLYINSPGGSVTAGMSIYDTMQFIKPDV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + + + + Sbjct: 98 STVCMGQAASMGAFLLAGGAKGKRHVLPNSRVMIHQPLG---GFQGQASDIAIHAQEILG 154 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K L++E P + + Sbjct: 155 IKHK---------------------------LNLLLAEHTGQPMEVIERDTDRDNFMSAT 187 Query: 217 EAKKVGLIDVVGGQEEVWQS 236 +A + GL+D V + Sbjct: 188 DAVEYGLVDSVLTRRAADAE 207 >gi|312961789|ref|ZP_07776287.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas fluorescens WH6] gi|311284048|gb|EFQ62631.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas fluorescens WH6] Length = 211 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 45 VIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L + A S V L + ++ I + Sbjct: 105 STTCIGQACSMGAFLLTAGAEGKRYCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFI-- 162 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L+++ ++ + + Sbjct: 163 ----------------------------RERLNTLMAKHSGHTLEEIERDTNRDNFMSAE 194 Query: 217 EAKKVGLIDVV 227 A++ GLID V Sbjct: 195 AAREYGLIDAV 205 >gi|69249001|ref|ZP_00604844.1| Peptidase S14, ClpP [Enterococcus faecium DO] gi|227550370|ref|ZP_03980419.1| endopeptidase Clp [Enterococcus faecium TX1330] gi|257879589|ref|ZP_05659242.1| peptidase S14 [Enterococcus faecium 1,230,933] gi|257882608|ref|ZP_05662261.1| peptidase S14 [Enterococcus faecium 1,231,502] gi|257885031|ref|ZP_05664684.1| peptidase S14 [Enterococcus faecium 1,231,501] gi|257888403|ref|ZP_05668056.1| peptidase S14 [Enterococcus faecium 1,141,733] gi|257890257|ref|ZP_05669910.1| peptidase S14 [Enterococcus faecium 1,231,410] gi|257893441|ref|ZP_05673094.1| peptidase S14 [Enterococcus faecium 1,231,408] gi|257897223|ref|ZP_05676876.1| peptidase S14 [Enterococcus faecium Com12] gi|257899224|ref|ZP_05678877.1| peptidase S14 [Enterococcus faecium Com15] gi|258616800|ref|ZP_05714570.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus faecium DO] gi|260559746|ref|ZP_05831926.1| peptidase S14 [Enterococcus faecium C68] gi|261207321|ref|ZP_05922008.1| peptidase S14 [Enterococcus faecium TC 6] gi|289566520|ref|ZP_06446943.1| Clp protease [Enterococcus faecium D344SRF] gi|293377995|ref|ZP_06624173.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium PC4.1] gi|293557243|ref|ZP_06675791.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium E1039] gi|293559757|ref|ZP_06676278.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium E1162] gi|293567607|ref|ZP_06678951.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium E1071] gi|293570370|ref|ZP_06681427.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium E980] gi|294616541|ref|ZP_06696319.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium E1636] gi|294618382|ref|ZP_06697960.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium E1679] gi|294623239|ref|ZP_06702110.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium U0317] gi|314938917|ref|ZP_07846184.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium TX0133a04] gi|314943860|ref|ZP_07850593.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium TX0133C] gi|314948100|ref|ZP_07851501.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium TX0082] gi|314951634|ref|ZP_07854679.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium TX0133A] gi|314993860|ref|ZP_07859194.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium TX0133B] gi|314996702|ref|ZP_07861725.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium TX0133a01] gi|68194308|gb|EAN08823.1| Peptidase S14, ClpP [Enterococcus faecium DO] gi|227180509|gb|EEI61481.1| endopeptidase Clp [Enterococcus faecium TX1330] gi|257813817|gb|EEV42575.1| peptidase S14 [Enterococcus faecium 1,230,933] gi|257818266|gb|EEV45594.1| peptidase S14 [Enterococcus faecium 1,231,502] gi|257820883|gb|EEV48017.1| peptidase S14 [Enterococcus faecium 1,231,501] gi|257824457|gb|EEV51389.1| peptidase S14 [Enterococcus faecium 1,141,733] gi|257826617|gb|EEV53243.1| peptidase S14 [Enterococcus faecium 1,231,410] gi|257829820|gb|EEV56427.1| peptidase S14 [Enterococcus faecium 1,231,408] gi|257833788|gb|EEV60209.1| peptidase S14 [Enterococcus faecium Com12] gi|257837136|gb|EEV62210.1| peptidase S14 [Enterococcus faecium Com15] gi|260074414|gb|EEW62736.1| peptidase S14 [Enterococcus faecium C68] gi|260078381|gb|EEW66085.1| peptidase S14 [Enterococcus faecium TC 6] gi|289161674|gb|EFD09551.1| Clp protease [Enterococcus faecium D344SRF] gi|291589708|gb|EFF21512.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium E1071] gi|291590588|gb|EFF22319.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium E1636] gi|291595359|gb|EFF26674.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium E1679] gi|291597346|gb|EFF28526.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium U0317] gi|291600607|gb|EFF30911.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium E1039] gi|291606305|gb|EFF35718.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium E1162] gi|291609548|gb|EFF38813.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium E980] gi|292643360|gb|EFF61492.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium PC4.1] gi|313589140|gb|EFR67985.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium TX0133a01] gi|313591670|gb|EFR70515.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium TX0133B] gi|313596230|gb|EFR75075.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium TX0133A] gi|313597478|gb|EFR76323.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium TX0133C] gi|313641791|gb|EFS06371.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium TX0133a04] gi|313645436|gb|EFS10016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus faecium TX0082] Length = 197 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 62/192 (32%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ D +I ++ + DS + + ++SPGGS AG AI+ + VK Sbjct: 29 IIMLSGQVTDDLANSIIAQLLFLDAQDSEKDIYLYINSPGGSVTAGMAIYDTMNFVKADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A + + L ++ Sbjct: 89 QTIVMGMAASMGSFLLTAGTKGKRFALPNAEIMIHQPLGGAQGQATEIEIAAR------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + ++++E P + +D + T Sbjct: 142 -----------------------HILQTRERLNKILAERTGQPLEVIEKDTDRDNYMTAE 178 Query: 217 EAKKVGLIDVVG 228 +AK GLID V Sbjct: 179 QAKAYGLIDEVM 190 >gi|262374981|ref|ZP_06068215.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter lwoffii SH145] gi|262309994|gb|EEY91123.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter lwoffii SH145] Length = 201 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED+ ++ ++ + ++ + + ++SPGGS AG AI+ +Q +K Sbjct: 36 VIFMTGEVEDNMANLIVAQMLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKPDV 95 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L + E + V L + ++ I + Sbjct: 96 VTYCMGQAASMGAFLLNAGTKGKRYCLENARVMIHQPLGGFRGQASDIEIHAREILFI-- 153 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 RL++E Y+K T Sbjct: 154 ----------------------------KERLNRLMAEHSGQDYEKVARDTDRDNFMTAQ 185 Query: 217 EAKKVGLIDVVGG 229 +AK+ GL+D V Sbjct: 186 QAKEYGLVDEVLT 198 >gi|261210563|ref|ZP_05924856.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC341] gi|262404275|ref|ZP_06080830.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC586] gi|260840348|gb|EEX66919.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC341] gi|262349307|gb|EEY98445.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC586] Length = 208 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + + + + + Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLG---GFQGQASDIQIHAQEILT 158 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K RL++E P + + Sbjct: 159 IKNK---------------------------LNRLLAEHTGQPLEVIERDTDRDNFMSAD 191 Query: 217 EAKKVGLIDVV 227 +A + GL+D V Sbjct: 192 QAVEYGLVDAV 202 >gi|256824761|ref|YP_003148721.1| ATP-dependent Clp protease proteolytic subunit ClpP [Kytococcus sedentarius DSM 20547] gi|256688154|gb|ACV05956.1| ATP-dependent Clp protease proteolytic subunit ClpP [Kytococcus sedentarius DSM 20547] Length = 240 Score = 46.9 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 55/181 (30%), Gaps = 30/181 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++I ++ + D +++ ++SPGGS A AI+ +Q ++ + Sbjct: 79 ASADDIIAQLLVLESQDPDRDVLMYINSPGGSFTAMTAIYDTMQFIRPDVQTFVLGQAAS 138 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A A L + A A S + + Sbjct: 139 AGAVLLAAGAPGKRFALPNSRILIHQPAME--------------------GMGGMASDLE 178 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226 N ++ +K + +I + AEA++ GL+D Sbjct: 179 ITANEVLRMRTWLEETW---------AKHSGQTPEKVRKDIERDKILSAAEAQEYGLVDA 229 Query: 227 V 227 V Sbjct: 230 V 230 >gi|330921326|ref|XP_003299376.1| hypothetical protein PTT_10352 [Pyrenophora teres f. teres 0-1] gi|311326959|gb|EFQ92512.1| hypothetical protein PTT_10352 [Pyrenophora teres f. teres 0-1] Length = 248 Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 27/205 (13%), Positives = 59/205 (28%), Gaps = 31/205 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+++D S + ++ + D+ + + ++SPGGS AG AI+ + +K+ Sbjct: 72 IICLNGEVDDFMSANAVAQLLFLEADNPEKPISMYINSPGGSVSAGLAIYDTMNYIKSPV 131 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L A + V + K + Sbjct: 132 STICMGIAASMGSLLLAGGAEGQRYILPHARVMIHQPSG---GYSGKASDIADHAKEILR 188 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 K S + ++ + + Sbjct: 189 IRDKLNRIYQSHLT-------------------------TKRTLEEIEKYMERDYYMDAQ 223 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALG 241 EA + G++D + + E Sbjct: 224 EAVEFGIVDKILEKRETSAKEEEKK 248 >gi|257467083|ref|ZP_05631394.1| prophage LambdaBa02, Clp protease family protein [Fusobacterium gonidiaformans ATCC 25563] gi|315918215|ref|ZP_07914455.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] gi|313692090|gb|EFS28925.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] Length = 371 Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 28/246 (11%), Positives = 76/246 (30%), Gaps = 46/246 (18%) Query: 38 VARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 +A I I G I S + ++ + + + + + ++S GG + AIF Sbjct: 17 IAEIRIYGTITKWAWEEVGEVSSHSFAKELKNL---KNISKINLRVNSGGGDVFEANAIF 73 Query: 88 RAIQKVKNRKP--VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 ++ +I + +AASA + ++ ++ L Sbjct: 74 NLLKSYAKENNVEIIGYIDGLAASAASFLVLCAHKVIMGVGCLFMIHN------------ 121 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204 + +K +N + + + + Sbjct: 122 ------PWTYTKGNVKELGQTIDFLNK------------IKESILDIYETKTKLTRQEIS 163 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 + + + ++ +EA + G +D + E+V ++ + ++ + KN Sbjct: 164 QKMDEEKWFSASEALESGFVDEMSEMEDVENNILNAAGENFVQNFINSEILKNKVEEIKN 223 Query: 265 NLSISS 270 + + + Sbjct: 224 KIKLEN 229 >gi|257463897|ref|ZP_05628283.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp. D12] gi|317061426|ref|ZP_07925911.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp. D12] gi|313687102|gb|EFS23937.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp. D12] Length = 195 Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 61/180 (33%), Gaps = 28/180 (15%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + L+ ++ + +D +I+ ++SPGGS AG AI+ + VK + + Sbjct: 40 AASLVAQLLYLEAEDPTKDIILYINSPGGSVSAGLAIYDTMNYVKPDIQTVCIGQAASMG 99 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L + A E S + L + + K ++++ K Sbjct: 100 AFLLAAGTKGKRFALENSRIMIHQPLGGTGSGYHQATDVQIIAKELQATKEK-------- 151 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVG 228 +++++ ++ T EA K GLID+V Sbjct: 152 -------------------LAGIIAKNTGKSKEEVLEDTERDNYLTAEEAVKYGLIDMVM 192 >gi|50083772|ref|YP_045282.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp. ADP1] gi|60389584|sp|Q6FEP8|CLPP_ACIAD RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|49529748|emb|CAG67460.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) (Caseinolytic protease) (Protease Ti) (Heat shock protein F21.5) [Acinetobacter sp. ADP1] Length = 201 Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED+ ++ ++ + ++ + + ++SPGGS AG AI+ +Q +K Sbjct: 36 VIFLTGEVEDNMANLIVAQMLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKPDV 95 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L + A E + V L + ++ I + Sbjct: 96 VTYCMGQAASMGAFLLNAGAKGKRYCLENARVMIHQPLGGFRGQASDIEIHAREILFI-- 153 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 RL++E Y++ T Sbjct: 154 ----------------------------KERLNRLMAEHSGQDYERVARDTDRDNFMTAQ 185 Query: 217 EAKKVGLIDVV 227 AK+ GL+D V Sbjct: 186 AAKEYGLVDEV 196 >gi|23008901|ref|ZP_00050152.1| hypothetical protein Magn03003892 [Magnetospirillum magnetotacticum MS-1] Length = 128 Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 39/74 (52%) Query: 31 VEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 +ARI+I G I S+ + IER+ + ++VS+SSPGG+ E + R + Sbjct: 48 FPATESQIARISIGGFIAGSESTRKLIERVGDAKAVQGVVVSISSPGGTXTGSEELXRXL 107 Query: 91 QKVKNRKPVITEVH 104 + + +KP++ V Sbjct: 108 RALAAKKPIVAFVD 121 >gi|254721484|ref|ZP_05183273.1| prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. A1055] Length = 251 Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 80/260 (30%), Gaps = 50/260 (19%) Query: 27 WSSHVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSP 76 + + A + I G+I S ++ + D + + ++SP Sbjct: 9 FFQMKASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDD--IETINLYINSP 66 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GGS + AI +Q+ + +I+ + + AS ++ S+ I+ S++ Sbjct: 67 GGSVFETMAIIAMLQRHHAK--IISYIDGIGASCASVLPMISDKIIMYANSMMMIHN--- 121 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + Y D+L + ++ + L Sbjct: 122 AWTYASGNADQLRKAADDIE-------------------------RINQSMVQHYLTRAG 156 Query: 197 RNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 + D L D W + EA GL D + L + +K++ Sbjct: 157 DKLDEDTLKQLLDAETWLSAEEAMGYGLCDEIIPANNATACL-------DEKWMKEYKNI 209 Query: 256 KNYWFCDLKNLSISSLLEDT 275 N+S + +LE Sbjct: 210 PQQLVNAQANISSNEMLERQ 229 >gi|150016209|ref|YP_001308463.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium beijerinckii NCIMB 8052] gi|149902674|gb|ABR33507.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium beijerinckii NCIMB 8052] Length = 199 Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 61/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IIMLSGEVNDDSANLIVAQLLFLESEDPDKDIYIYINSPGGSITAGNAIYDTMQYIKCDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S A + V L + + Sbjct: 89 STICIGMAASMGAFLLSSGTKGKRFALPNAEVMIHQPLGGFQGQATDFEIHAKR------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + R++SE+ P + + + Sbjct: 143 ------------------------ILKMKETLNRILSENTGKPLETIKADVERDNFMSAE 178 Query: 217 EAKKVGLIDVVGG 229 EAK GL+D V Sbjct: 179 EAKAYGLVDEVIT 191 >gi|154148860|ref|YP_001405639.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter hominis ATCC BAA-381] gi|166201810|sp|A7HZE8|CLPP_CAMHC RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|153804869|gb|ABS51876.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter hominis ATCC BAA-381] Length = 195 Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I D + ++ ++ + +D + + ++SPGG +G +I+ + +K Sbjct: 28 IVMLSGEINDEVASSVVAQLLFLEAEDPDKDIYLYINSPGGVVTSGFSIYDTMNYIKPAV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A + + L ++ I +K+ Sbjct: 88 STICIGQAASMGAFLLSCGEKGKRYALPNARIMIHQPLGGAQGQATDIEITTKEILRIKA 147 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + K +E+ K +D + + Sbjct: 148 TLNKIL------------------------------AENSGQKLSKIEKDTDRDFYMSAQ 177 Query: 217 EAKKVGLIDVV 227 EA K GLID V Sbjct: 178 EAVKYGLIDKV 188 >gi|89896100|ref|YP_519587.1| hypothetical protein DSY3354 [Desulfitobacterium hafniense Y51] gi|219670517|ref|YP_002460952.1| ATP-dependent Clp protease proteolytic subunit ClpP [Desulfitobacterium hafniense DCB-2] gi|116243113|sp|Q24S49|CLPP2_DESHY RecName: Full=ATP-dependent Clp protease proteolytic subunit 2; AltName: Full=Endopeptidase Clp 2 gi|89335548|dbj|BAE85143.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219540777|gb|ACL22516.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfitobacterium hafniense DCB-2] Length = 202 Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 30/191 (15%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + +D + + ++SPGGS AG AI+ +Q ++ Sbjct: 30 IIFLGGPVTDDVANLVVAQMLFLEAEDPEKDIFLYINSPGGSISAGMAIYDTMQYIRADV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A + + L + ++ + Sbjct: 90 HTICVGLAASMGAFLLTAGAKGKRQALPNAEILIHQPLIGGGGISGQATEIEI------- 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + R+++E ++ R T Sbjct: 143 --------------------HAKHLLRVKERMNRILAERTGQTIERIEADTDRDRYMTAE 182 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 183 EAKEYGLIDEV 193 >gi|59711403|ref|YP_204179.1| ATP-dependent Clp protease proteolytic subunit [Vibrio fischeri ES114] gi|197335304|ref|YP_002155557.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio fischeri MJ11] gi|67460143|sp|Q5E6Q5|CLPP_VIBF1 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|226706555|sp|B5FBZ8|CLPP_VIBFM RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|59479504|gb|AAW85291.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Vibrio fischeri ES114] gi|197316794|gb|ACH66241.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio fischeri MJ11] Length = 207 Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 65/196 (33%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + + + + + Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLG---GFQGQASDIQIHAQEILT 158 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K L++E P + + Sbjct: 159 IKKK---------------------------LNTLLAEHTGQPLEVIEQDTDRDNFMSAD 191 Query: 217 EAKKVGLIDVVGGQEE 232 +A K GL+D V + + Sbjct: 192 DAVKYGLVDAVLNKRD 207 >gi|84499432|ref|ZP_00997720.1| Protease subunit of ATP-dependent Clp protease [Oceanicola batsensis HTCC2597] gi|84392576|gb|EAQ04787.1| Protease subunit of ATP-dependent Clp protease [Oceanicola batsensis HTCC2597] Length = 210 Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 58/190 (30%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + ++SPGG +G +I+ +Q +K + Sbjct: 38 IIFVSGPVHDGMSSLIVAQLLHLEAENPTKDISMYINSPGGVVTSGLSIYDTMQYIKPKV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L A+ + A + + Y Sbjct: 98 GTLVIGQAASMGSLLLAGGAAGMRYALPNAEIMVHQPSGGYRGQ---------------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + K + + + V L T E Sbjct: 142 ---ATDIMIHARHTEKLKERLNKIYVKHTGQDFETV----------VDALERDNFMTAEE 188 Query: 218 AKKVGLIDVV 227 AK GLID + Sbjct: 189 AKDWGLIDEI 198 >gi|227495366|ref|ZP_03925682.1| endopeptidase Clp [Actinomyces coleocanis DSM 15436] gi|226831120|gb|EEH63503.1| endopeptidase Clp [Actinomyces coleocanis DSM 15436] Length = 205 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 65/198 (32%), Gaps = 33/198 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D + ++ ++ ++ +D + + ++SPGGS AG AI+ +Q +K Sbjct: 34 IIWLGGEVRDENANQICAQMLLLAAEDPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPDV 93 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A A + + L Sbjct: 94 VTVATGIAASMGQFLLTAGAKGKRYATPHARILLHQPLGGVGG----------------- 136 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +++ D++ + +E ++ +D W T Sbjct: 137 -------------TTTEIRINADLILQMKRELAEITAERTGKTVEQIHADADRDHWYTAQ 183 Query: 217 EAKKVGLIDVVGGQEEVW 234 EA + G D + + + Sbjct: 184 EALEYGFFDHIVTKADAV 201 >gi|304407481|ref|ZP_07389133.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus curdlanolyticus YK9] gi|304343432|gb|EFM09274.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus curdlanolyticus YK9] Length = 193 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 60/194 (30%), Gaps = 33/194 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D +I ++ ++ DD + + ++SPGGS AG IF +Q +K Sbjct: 29 IIFLGSAIDDDVANSIIAQLLFLAADDPEKDIHLYINSPGGSVTAGMGIFDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A + S V L V+ + + + Sbjct: 89 STICVGMAASMGSLLLTAGAKGKRFSLPNSEVMIHQPLG---GVRGQASDIKIHADWIIK 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + K E PY+K + Sbjct: 146 TKQKLNQIYV---------------------------ERTGQPYEKIERDTDRDNFLSAE 178 Query: 217 EAKKVGLIDVVGGQ 230 EA GLID V Sbjct: 179 EAVAYGLIDKVVTS 192 >gi|291543930|emb|CBL17039.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ruminococcus sp. 18P13] Length = 196 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 57/176 (32%), Gaps = 28/176 (15%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + D + + ++SPGGS AG AI+ +Q +K I + A Sbjct: 44 VVAQLLYLESQDPDKDISLYINSPGGSVSAGFAIYDTMQYIKCDVSTICIGLAASMGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L S A A S + L + + + +++ + Sbjct: 104 LSSGAKGKRFALPNSEIMIHQPLIGGGGLSGQATDIQIRTENLLRTK------------- 150 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227 R++SE+ + T EA + GLID V Sbjct: 151 --------------ENLNRILSENTGKSIEDIRRDTDRDNFMTANEAMEYGLIDKV 192 >gi|228474429|ref|ZP_04059164.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus hominis SK119] gi|314936932|ref|ZP_07844279.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus hominis subsp. hominis C80] gi|228271788|gb|EEK13135.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus hominis SK119] gi|313655551|gb|EFS19296.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus hominis subsp. hominis C80] Length = 195 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 65/197 (32%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + ++ ++ + DS + + ++SPGGS AG AI+ IQ +K Sbjct: 29 IIMLGSAIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A + V L ++ Sbjct: 89 QTICIGMAASMGSFLLAAGTKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216 + + R+++E + +D T Sbjct: 142 -----------------------HILKTREKLNRILAERTGQNIETIQKDTDRDNFLTAD 178 Query: 217 EAKKVGLIDVVGGQEEV 233 EAK+ GLID V E++ Sbjct: 179 EAKEYGLIDHVMQPEDM 195 >gi|27467469|ref|NP_764106.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus epidermidis ATCC 12228] gi|57866412|ref|YP_188029.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus epidermidis RP62A] gi|242242138|ref|ZP_04796583.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus epidermidis W23144] gi|251810202|ref|ZP_04824675.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus epidermidis BCM-HMP0060] gi|282875651|ref|ZP_06284522.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus epidermidis SK135] gi|293368230|ref|ZP_06614859.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus epidermidis M23864:W2(grey)] gi|38257586|sp|Q8CTE0|CLPP_STAES RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|67460168|sp|Q5HQW0|CLPP_STAEQ RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|27315012|gb|AAO04148.1|AE016745_247 ATP-dependent Clp protease proteolytic subunit [Staphylococcus epidermidis ATCC 12228] gi|57637070|gb|AAW53858.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus epidermidis RP62A] gi|242234451|gb|EES36763.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus epidermidis W23144] gi|251806254|gb|EES58911.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus epidermidis BCM-HMP0060] gi|281295678|gb|EFA88201.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus epidermidis SK135] gi|291317653|gb|EFE58070.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus epidermidis M23864:W2(grey)] gi|319401155|gb|EFV89370.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus epidermidis FRI909] gi|329723271|gb|EGG59801.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Staphylococcus epidermidis VCU144] gi|329736698|gb|EGG72963.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Staphylococcus epidermidis VCU028] gi|329738003|gb|EGG74227.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Staphylococcus epidermidis VCU045] Length = 194 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 64/192 (33%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + QI+D + ++ ++ + DS + + ++SPGGS AG AI+ IQ +K Sbjct: 29 IIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + V L ++ Sbjct: 89 QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + R++SE +K T A Sbjct: 142 -----------------------HILKTREKLNRILSERTGQSIEKIQQDTDRDNFLTAA 178 Query: 217 EAKKVGLIDVVG 228 EAK+ GLID V Sbjct: 179 EAKEYGLIDEVM 190 >gi|260889396|ref|ZP_05900659.1| putative prophage L54a, Clp protease [Leptotrichia hofstadii F0254] gi|260860807|gb|EEX75307.1| putative prophage L54a, Clp protease [Leptotrichia hofstadii F0254] Length = 260 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 88/262 (33%), Gaps = 42/262 (16%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD-----SATALIVSLSSPGGS 79 + + V++ A + + G I + + +++ + D + + ++SPGGS Sbjct: 5 LKFWNLVKNEEEKTAELILYGSIGSDEYWDDVSDKVFKQDIENLGDVENITLYINSPGGS 64 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 ++ AI ++ K + ++ + + A+ +++ S + P Sbjct: 65 VFSAVAIANTLKNHKAK-----------------VTANIDGLAASAATIITSACDTVRMP 107 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 F+ + + + +N +++ ++ + Sbjct: 108 KNALFMIH---NPITFAYGNNQEMQKTVEMLNKVKNSIIETYLNKA------------KT 152 Query: 200 PYDKTLVLSDGRIWT-GAEAKKVGLIDVVGGQEE----VWQSLYALGVDQSIRKIKDWNP 254 + L D W AK+ G +D + +E V L + I K K++ Sbjct: 153 DKETLSELMDNETWMDAETAKEYGFVDEIVNEEVGKEFVENKLIINNMAFDISKFKNFRK 212 Query: 255 PKNYWFCDLKNLSISSLLEDTI 276 K+ + KN + + + Sbjct: 213 VKDIVIDNKKNTKEVKMTLEEL 234 >gi|184154836|ref|YP_001843176.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus fermentum IFO 3956] gi|227514403|ref|ZP_03944452.1| endopeptidase Clp [Lactobacillus fermentum ATCC 14931] gi|260663135|ref|ZP_05864027.1| Clp protease [Lactobacillus fermentum 28-3-CHN] gi|226706457|sp|B2GAL4|CLPP_LACF3 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|183226180|dbj|BAG26696.1| endopeptidase Clp proteolytic subunit [Lactobacillus fermentum IFO 3956] gi|227087269|gb|EEI22581.1| endopeptidase Clp [Lactobacillus fermentum ATCC 14931] gi|260552327|gb|EEX25378.1| Clp protease [Lactobacillus fermentum 28-3-CHN] Length = 196 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 59/195 (30%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IED + ++ ++ + DS + + ++SPGG +G AI+ + +K+ Sbjct: 29 IIMLSGPIEDNMANSIVAQLLFLDAQDSTKDIYLYINSPGGVVTSGMAIYDTMNFIKSDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ + S S V + + Sbjct: 89 QTIVIGMAASMASVLVSSGTKGKRFGLPHSTVMIHQPSGGAQGQQTEIQIAAEE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + +++++ +++ T Sbjct: 143 ------------------------ILKTRKMINEILAKNSGQSFEQVEQDTERDHYLTAQ 178 Query: 217 EAKKVGLIDVVGGQE 231 EA GL+D V Sbjct: 179 EAVDYGLLDGVMDSN 193 >gi|258621302|ref|ZP_05716336.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus VM573] gi|258625374|ref|ZP_05720271.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus VM603] gi|262166052|ref|ZP_06033789.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus VM223] gi|262171083|ref|ZP_06038761.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus MB-451] gi|258582365|gb|EEW07217.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus VM603] gi|258586690|gb|EEW11405.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus VM573] gi|261892159|gb|EEY38145.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus MB-451] gi|262025768|gb|EEY44436.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus VM223] Length = 208 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + I ++ Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAKEILTI-- 159 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + RL++E P + + Sbjct: 160 ----------------------------KNKLNRLLAEHTGQPLEVIERDTDRDNFMSAD 191 Query: 217 EAKKVGLIDVV 227 +A + GL+D V Sbjct: 192 QAVEYGLVDAV 202 >gi|94968588|ref|YP_590636.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus Koribacter versatilis Ellin345] gi|116243126|sp|Q1IRD8|CLPP_ACIBL RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|94550638|gb|ABF40562.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus Koribacter versatilis Ellin345] Length = 194 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 32/193 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D+ +I ++ + +D + + ++SPGGS AG AI+ +Q ++ Sbjct: 28 IIFLGTPIDDNVANLIIAQMLFLEAEDPEKDISLYINSPGGSITAGMAIYDTMQFIRPDV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S A A TS + L + + Sbjct: 88 ATICIGQCASMGATLLASGAPGKRYALPTSRILIHQPLMSGLSGQATDIDIHAR------ 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + +L+++ N +K + I Sbjct: 142 -----------------------EILRMREITNQLLAKHCNQRLEKVEKDVERDFIMNAQ 178 Query: 217 EAKKVGLIDVVGG 229 +AK+ GL+D + Sbjct: 179 QAKEYGLVDDIIY 191 >gi|251791978|ref|YP_003006698.1| ATP-dependent Clp protease proteolytic subunit [Aggregatibacter aphrophilus NJ8700] gi|247533365|gb|ACS96611.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aggregatibacter aphrophilus NJ8700] Length = 193 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED+ ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 VIFLSGEVEDNMANLIVAQLLFLESEDPDKDINLYINSPGGSVTAGMAIYDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A + V L + Sbjct: 89 RTLCVGQACSMGAFLLAGGAPGKRGVLPHARVMIHQPLGGFRGQ---------------- 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +Q+ + ++ P + +D + + Sbjct: 133 --------------ASDIQIHAQEILKIKSTLNERLAFHTGQPIETIEKDTDRDNFMSAE 178 Query: 217 EAKKVGLIDVV 227 EA+ GL+D V Sbjct: 179 EAQNYGLVDEV 189 >gi|308070425|ref|YP_003872030.1| ATP-dependent Clp protease proteolytic subunit (endopeptidase Clp) [Paenibacillus polymyxa E681] gi|310643606|ref|YP_003948364.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus polymyxa SC2] gi|305859704|gb|ADM71492.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) [Paenibacillus polymyxa E681] gi|309248556|gb|ADO58123.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus polymyxa SC2] Length = 211 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D +I ++ +S +D + + ++SPGGS AG I+ +Q +K Sbjct: 44 IIFLSGPIDDDVANLVIAQLLFLSAEDPEKDINLYINSPGGSVTAGMGIYDTMQFIKPDV 103 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A S V L + Sbjct: 104 STICVGMAASMGSLLLTAGAPGKRYALTNSEVMIHQPLGGIQGQASDM------------ 151 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 + D + + ++ E P +K +D + Sbjct: 152 ------------------LIHADWIIKTRAKLNQIYVERTGQPLEKIERDTDRDFFMEAE 193 Query: 217 EAKKVGLIDVV 227 EAK G+ID V Sbjct: 194 EAKAYGIIDQV 204 >gi|157693039|ref|YP_001487501.1| serine peptidase [Bacillus pumilus SAFR-032] gi|157681797|gb|ABV62941.1| possible S49 family serine peptidase [Bacillus pumilus SAFR-032] Length = 437 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 4/132 (3%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISRD 63 +KKIK + S + ++ + V I I +E + IER ++ Sbjct: 1 MKKIKISIALFSCFIICLL-LGVQLTAKSVDQKVHVIPIEDTVEKGLSKFIERSFEHAKS 59 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 + A +I+ +++PGG+ A I I+ + PV V+ A SAG ++ ++ I Sbjct: 60 ERAKHIILDINTPGGAVDAALEIADTIRA--SDIPVTAFVNHRALSAGAFLALNADQIYM 117 Query: 124 AETSLVGSIGVL 135 +G+ ++ Sbjct: 118 TPNGKMGAAAII 129 >gi|23099067|ref|NP_692533.1| translocation enhancing protein [Oceanobacillus iheyensis HTE831] gi|22777295|dbj|BAC13568.1| translocation enhancing protein [Oceanobacillus iheyensis HTE831] Length = 244 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 77/232 (33%), Gaps = 37/232 (15%) Query: 28 SSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSS 75 S+ + ++ ++I GQ+E + L+ ++ I ++ L++ L++ Sbjct: 33 SNVPQAPDSNIHVLSIIGQVEGHVQLPPQNKTTKYEHLLPQLIAIEQNPKIEGLVILLNT 92 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 GG AG A+ I + I + ++ + IV T + I + Sbjct: 93 VGGDVEAGLALAEMISSLSKPTVSIVLGGGHSIGVPIAVATDHSFIVPTATMTIHPIRLT 152 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 V + L ++ + + + + F L+ Sbjct: 153 GLVIGVPQTFEYLD-------------------KMQERVIDFVVHHSNIKEEKFKELMFA 193 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 N+ D G GA+A + GLI+ VGG +E L + Sbjct: 194 QGNLTRDI------GTNVVGADAVEFGLINDVGGVKEAMIKLNEFIGPKQKP 239 >gi|329924034|ref|ZP_08279297.1| nodulation efficiency protein NfeD [Paenibacillus sp. HGF5] gi|328940873|gb|EGG37181.1| nodulation efficiency protein NfeD [Paenibacillus sp. HGF5] Length = 453 Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 94/240 (39%), Gaps = 23/240 (9%) Query: 2 EFVLKKIKTRY--VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIE 58 + +++ T V++ L+++ + S + N V I ++ IE +ER Sbjct: 4 KLRMRRFLTLTAAVVMMLISIGMYAAPMKSAMAANIGSVYVIPVKQPIERGLTSFMERGF 63 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 + +++ +A +++ + +PGG I ++ + P++ + AASAG I+ + Sbjct: 64 KEAKEMAAGLIVLEIDTPGGLVDQAGEIATLMK--DSEIPIVAYITGDAASAGSYIALNA 121 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 + I +E S++G+ ++ + K++ + +E + ++ Sbjct: 122 DKIAMSEGSMIGAAYMVDARGNRIEDAKLVSW---------WKSKMAGAAEAGGRNKEIA 172 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSL 237 + D + + + P + T EA K G D + EEV + Sbjct: 173 MGMADINLKVDMPEIGL-TKQPGEII-------SLTHDEALKTGYADTIANSTEEVITWM 224 >gi|293610272|ref|ZP_06692573.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827504|gb|EFF85868.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325124452|gb|ADY83975.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter calcoaceticus PHEA-2] Length = 201 Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED+ ++ ++ + ++ + + ++SPGGS AG AI+ +Q +K Sbjct: 36 VIFLTGEVEDNMANLIVAQMLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKPDV 95 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L + A E + V L + ++ I + Sbjct: 96 VTYCMGQAASMGAFLLNAGAKGKRYCLENARVMIHQPLGGFRGQASDIEIHAREILFI-- 153 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 RL++E Y+ T Sbjct: 154 ----------------------------KERLNRLMAEHSGQDYETVARDTDRDNFMTAQ 185 Query: 217 EAKKVGLIDVV 227 AK+ GL+D V Sbjct: 186 AAKEYGLVDQV 196 >gi|269795730|ref|YP_003315185.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sanguibacter keddieii DSM 10542] gi|269097915|gb|ACZ22351.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sanguibacter keddieii DSM 10542] Length = 232 Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 61/180 (33%), Gaps = 27/180 (15%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + + +I+ ++SPGGS A AI+ +Q + ++ + + Sbjct: 68 ASADDVMAQLLVLESQEPNRDIILYINSPGGSFTAMTAIYDTMQYITSQVQTVCLGQAAS 127 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + +A + V + D + + ++ Sbjct: 128 AAAVLLAAGTPGKRLALPNARVLIHQPAMEGGNYAQASDIEIHANELIRMRE-------- 179 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 + + R V + R + +I + +A GL+D + Sbjct: 180 ------------WLESTLALHSGRDVEQVRK-------DIERDKILSAQQAVDYGLVDSI 220 >gi|298529223|ref|ZP_07016626.1| protein of unknown function DUF107 [Desulfonatronospira thiodismutans ASO3-1] gi|298510659|gb|EFI34562.1| protein of unknown function DUF107 [Desulfonatronospira thiodismutans ASO3-1] Length = 431 Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 84/235 (35%), Gaps = 37/235 (15%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPH-VARIAIRGQIEDSQE--LIERIERISRDDSATA 68 + + L ++ ++ FS D + H + ++ I G I + E L + + R +D A Sbjct: 4 FKICFLASIILLAFSLVFADRDPASHQILKVDIDGPITPATEELLQDSLRRAHDEDFI-A 62 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 L++ L +PGG E++ ++ + + + + + A++ ++ Sbjct: 63 LMIRLDTPGGLV---ESMRNMVKDILASDLPVIVWVDPPGARATSAGVFL--VAASDHAV 117 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 + + SP + + + MQ + + Sbjct: 118 MSPQTTIGSA--------------------------SPVTMGGEEQDETMQSKIINEMLS 151 Query: 189 FVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSLYALG 241 VR V++ + + +++ EA ++ +ID + +++ L G Sbjct: 152 LVRTVAKDKGRNVEWYEKAVTEAANIDSEEALQLRVIDHIATSTDDLLSQLGKKG 206 >gi|302804055|ref|XP_002983780.1| hypothetical protein SELMODRAFT_48156 [Selaginella moellendorffii] gi|300148617|gb|EFJ15276.1| hypothetical protein SELMODRAFT_48156 [Selaginella moellendorffii] Length = 206 Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ + + ++SPGG AG AI+ +Q +++ Sbjct: 32 IVCIHGPIADDTASLVVAQLLYLESENPLKPIHLYINSPGGVVTAGLAIYDTMQYIRSPV 91 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A++ + A+ + + V + + + + Sbjct: 92 STLCVG---QAASMGSLLLAAGEPGQRRSLPNARVMVHQPSGGASGQASDIAIQAREI-- 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 +L ++ +K + + Sbjct: 147 -------------------------LDMRSRLNKLYAKHTGSSIEKIDQSMERDHFMSPE 181 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 182 EAKEFGLIDEV 192 >gi|269837882|ref|YP_003320110.1| hypothetical protein Sthe_1855 [Sphaerobacter thermophilus DSM 20745] gi|269787145|gb|ACZ39288.1| protein of unknown function DUF107 [Sphaerobacter thermophilus DSM 20745] Length = 456 Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 69/220 (31%), Gaps = 29/220 (13%) Query: 11 RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATA 68 R +L L + + V+ +P V + I G I + + + R A+A Sbjct: 12 RLTILITAVLLALASMIAPGVQAATPSVMLLDIDGAITPVVANYVERGLRDAER-VGASA 70 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 +++ +++PGG + A I I A+ ++ A + A + Sbjct: 71 VVLRMNTPGGLSSAMNDITTDI---------------FASPVPVIVYVAPSGARAGSAGV 115 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 + + S+ + + V D+ Sbjct: 116 YITYAAHVAAMAPSTN----------IGSATPVFLDDSGQPQDADDAMTQKVVNDAVAQI 165 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 + RN + + + + T +A ++ +ID++ Sbjct: 166 RGFAEARGRNADWAE-QAVREAANITAQQALELNVIDLIA 204 >gi|226953943|ref|ZP_03824407.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp. ATCC 27244] gi|294651552|ref|ZP_06728861.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter haemolyticus ATCC 19194] gi|226835297|gb|EEH67680.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp. ATCC 27244] gi|292822575|gb|EFF81469.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter haemolyticus ATCC 19194] Length = 201 Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED+ ++ ++ + ++ + + ++SPGGS AG AI+ +Q +K Sbjct: 36 VIFLTGEVEDNMANLIVAQMLFLEAENPEKDIHLYINSPGGSVTAGMAIYDTMQFIKPDV 95 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L + A E + V L + ++ I + Sbjct: 96 VTYCMGQAASMGAFLLNAGAKGKRYCLENARVMIHQPLGGFRGQASDIEIHAREILFI-- 153 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 RL++E Y+ T Sbjct: 154 ----------------------------KERLNRLMAEHSGQDYETVARDTDRDNFMTAQ 185 Query: 217 EAKKVGLIDVV 227 AK+ GL+D V Sbjct: 186 AAKEYGLVDQV 196 >gi|220931198|ref|YP_002508106.1| peptidase S14 ClpP [Halothermothrix orenii H 168] gi|219992508|gb|ACL69111.1| peptidase S14 ClpP [Halothermothrix orenii H 168] Length = 234 Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 68/210 (32%), Gaps = 49/210 (23%) Query: 31 VEDNSPHVARIAIRGQI------EDSQELI------ERIERISRDDSATALIVSLSSPGG 78 ++ + A I + G I ED +++I ++ +I+ D +IV L+S GG Sbjct: 10 FNESDNNAAEIYLHGPIRNPLPDEDEEDVITLKEVRNKLNKITADK----IIVHLNSTGG 65 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + AI + K +I +AAS G +I A + I S++ Sbjct: 66 DLFQSVAIHNLFKDHKAE--IIMINDGIAASGGSIILMAGDKIKFYPNSIMMIHA----- 118 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 ++ K +++ + ++ Sbjct: 119 -------------AHTITYGDAKYHREVARKLDKIDKSLKENYSQRFTGA---------- 155 Query: 199 IPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 + L W T EAK+ G D + Sbjct: 156 --EKELEKLIQEETWLTAKEAKEKGFCDEI 183 >gi|254572225|ref|XP_002493222.1| hypothetical protein [Pichia pastoris GS115] gi|238033020|emb|CAY71043.1| Hypothetical protein PAS_chr3_0979 [Pichia pastoris GS115] gi|328352764|emb|CCA39162.1| ATP-dependent Clp protease, protease subunit [Pichia pastoris CBS 7435] Length = 226 Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 29/191 (15%) Query: 40 RIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D+Q + ++ + ++ + + ++SPGGS AG AI+ IQ ++ Sbjct: 52 IIYLAGGIDDAQATSITAQLLYLESQSTSKQINIYINSPGGSVTAGLAIYDTIQYIRAPV 111 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + ++ L S + + + D + + + Sbjct: 112 STVCLGQACSMASLLLASGTHGKRLILPNATIMVHQPSSANGIKGQATDIEIYARHIINT 171 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216 K + ++P + D+ L + R Sbjct: 172 -KQKLQTLYLKHMSPT-------------------------MTVDEITALLERDRFMEPE 205 Query: 217 EAKKVGLIDVV 227 EA +GL D V Sbjct: 206 EAVSLGLADRV 216 >gi|228966903|ref|ZP_04127944.1| ATP-dependent Clp protease proteolytic subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228792798|gb|EEM40359.1| ATP-dependent Clp protease proteolytic subunit [Bacillus thuringiensis serovar sotto str. T04001] Length = 241 Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 62/223 (27%), Gaps = 38/223 (17%) Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 + + + ++SPGGS + G AI+ +++ K + V +AAS +I+ A + I Sbjct: 44 DVSTINLHVNSPGGSVFEGIAIYNMLKRHKAKVN--VYVDALAASIASVIAMAGDTIYMP 101 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 + S++ Sbjct: 102 KNSMLMIHN----------------------------PWTWTEGNATELRKAADDLDRIG 133 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 + L + + + D W + EA + GL D V + + Sbjct: 134 NSSKQTYLQKAGEKLTDEMLQEMLDAETWLSADEAYEYGLCD-------VVEEANQMAAS 186 Query: 244 QSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + + + + ++ + ++ K Sbjct: 187 LDKDVLSKYKNVPKQLKNQDETKLSADEMKIRQQIAEEAKANA 229 >gi|227495367|ref|ZP_03925683.1| endopeptidase Clp [Actinomyces coleocanis DSM 15436] gi|226831121|gb|EEH63504.1| endopeptidase Clp [Actinomyces coleocanis DSM 15436] Length = 211 Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 57/186 (30%), Gaps = 28/186 (15%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D + + + ++SPGGS A AI+ +Q +K + + + Sbjct: 54 ASADDIMAQLLVLESQDPDSMITMYINSPGGSFTAMTAIYDTMQYIKPQVQTVCLGQAAS 113 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L A +A + V + Sbjct: 114 AAAVLLAGGAPGRRLALPNARVMIHQPAME--------------------GMRGQASDIE 153 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 ++H + R + +I T +A + GLID V Sbjct: 154 IVAEEMERMRTWLEETIAHHSGREIEQVRR--------DIDRDKILTAQQALEYGLIDQV 205 Query: 228 GGQEEV 233 + Sbjct: 206 LTSRKA 211 >gi|226533042|ref|NP_001147355.1| ATP-dependent Clp protease proteolytic subunit [Zea mays] gi|194700894|gb|ACF84531.1| unknown [Zea mays] gi|195610476|gb|ACG27068.1| ATP-dependent Clp protease proteolytic subunit [Zea mays] Length = 260 Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ A + + ++SPGG AG AI+ +Q +++ Sbjct: 63 IVCIHGPITDDTASLVVAQLLFLESENPAKPVHLYINSPGGVVTAGLAIYDTMQYIRSPV 122 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + ++ L + AS A + V Sbjct: 123 TTLCIGQAASMASLLLAAGASGERRALPNARVMIHQPSGGASGQ---------------- 166 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + ++ ++ D+ + Sbjct: 167 --------------ASDIAIHAKEILKVRDRLNKIYAKHTGQAIDRIEQCMERDMFMDPE 212 Query: 217 EAKKVGLIDVV 227 EA + GLID V Sbjct: 213 EAHEWGLIDEV 223 >gi|229591362|ref|YP_002873481.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas fluorescens SBW25] gi|259585962|sp|C3JYK0|CLPP_PSEFS RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|229363228|emb|CAY50311.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudomonas fluorescens SBW25] Length = 211 Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 59/197 (29%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 45 VIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L + A S V L + ++ I + Sbjct: 105 STTCIGQACSMGAFLLTAGAEGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFI-- 162 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L+++ ++ + + Sbjct: 163 ----------------------------RERLNTLMAKHSGHTLEEIERDTNRDNFMSAE 194 Query: 217 EAKKVGLIDVVGGQEEV 233 A+ GLID V + Sbjct: 195 AARDYGLIDAVIDKRPA 211 >gi|294500553|ref|YP_003564253.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus megaterium QM B1551] gi|294350490|gb|ADE70819.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus megaterium QM B1551] Length = 193 Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I +I D + ++ ++ ++ DD + + ++SPGGS AG AI+ +Q ++ Sbjct: 29 IILIGDEINDHIANSVVAQLLFLAADDPKKDISLYINSPGGSTSAGFAIYDTMQYIEPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L++ A A S + L ++ Sbjct: 89 QTICTGMAASFGALLLLAGAKGKRYALPNSEIMIHQPLGGARGQATEIEISARR------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + ++S P +K + Sbjct: 143 ------------------------ILKLKQHINEIISTRTGQPVEKVANDTERDYFMSAE 178 Query: 217 EAKKVGLIDVV 227 EAK+ G+ID + Sbjct: 179 EAKEYGVIDGI 189 >gi|258511812|ref|YP_003185246.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478538|gb|ACV58857.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 198 Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 65/192 (33%), Gaps = 34/192 (17%) Query: 40 RIAIRGQIEDSQ---ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 RI I G D Q ++ ++ ++ DD + + ++SPGGS AG AI+ +Q ++ Sbjct: 29 RIVILGTPIDDQVANSIVAQLLFLAADDPEKDIQMYINSPGGSVTAGMAIYDTMQHIRPA 88 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 + + A L + A + + L V+ + + + + Sbjct: 89 VSTLCIGMAASMGAFLLAAGEKGKRYALPNAEIMIHQPLG---GVEGQASDIKIHAEWIL 145 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTG 215 + K RL+SE P + T Sbjct: 146 KTKDK---------------------------LNRLLSERTGQPLEVIERDTDRDHFMTA 178 Query: 216 AEAKKVGLIDVV 227 EAK GLID V Sbjct: 179 EEAKAYGLIDEV 190 >gi|254172897|ref|ZP_04879571.1| NfeD protein [Thermococcus sp. AM4] gi|214033053|gb|EEB73881.1| NfeD protein [Thermococcus sp. AM4] Length = 454 Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 83/245 (33%), Gaps = 34/245 (13%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDS 65 ++TR + +TL V+ F + N V G I + IE ++ + Sbjct: 3 MRTRTLRPLALTLLVLMFLPAVLASPNQKTVYVAKFEGVITSYSVDQFSRYIEIAEKN-N 61 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 A ALI+ + +PGGS A + I + I++ + A++ + ++A Sbjct: 62 AEALIIEIDTPGGSGQAMQEIIQRIKESTVPVIIYVYPPGAIAASAGTYIALGSHLIAMA 121 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 S + + I++ + +K+ Sbjct: 122 PSTSIGACEPILGYASNGSIIRAPAKIRNFYIAYIKSLAE-------------------- 161 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 + RN+ + +++ T EA K +I+V+ ++V L ++ Sbjct: 162 --------ASGRNVTAAE-KFITEDLSLTPEEALKAHVIEVIA--DDVPDLLKKANGMKT 210 Query: 246 IRKIK 250 +K Sbjct: 211 KIPVK 215 >gi|262280902|ref|ZP_06058685.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter calcoaceticus RUH2202] gi|299771640|ref|YP_003733666.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp. DR1] gi|262257802|gb|EEY76537.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter calcoaceticus RUH2202] gi|298701728|gb|ADI92293.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp. DR1] Length = 201 Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED+ ++ ++ + ++ + + ++SPGGS AG AI+ +Q +K Sbjct: 36 VIFLTGEVEDNMANLIVAQMLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKPDV 95 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L + A E + V L + ++ I + Sbjct: 96 VTYCMGQAASMGAFLLNAGAKGKRYCLENARVMIHQPLGGFRGQASDIEIHAREILFI-- 153 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 RL++E Y+ T Sbjct: 154 ----------------------------KERLNRLMAEHSGQDYETVARDTDRDNFMTAQ 185 Query: 217 EAKKVGLIDVV 227 AK+ GL+D V Sbjct: 186 SAKEYGLVDQV 196 >gi|315604696|ref|ZP_07879759.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp. oral taxon 180 str. F0310] gi|315313708|gb|EFU61762.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp. oral taxon 180 str. F0310] Length = 204 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 64/198 (32%), Gaps = 33/198 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D + + ++ ++ +D + + ++SPGGS AG AI+ +Q VK Sbjct: 30 IIWLGGEVRDENANTICAQLLLLAAEDPDRDIYLYINSPGGSVTAGMAIYDTMQYVKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + A + V L Sbjct: 90 VTVGMGMAASMAQFLLTAGAPGKRYITPHTRVLLHQPLGGAGG----------------- 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + +++ D++ + + ++ D W + A Sbjct: 133 -------------SATEIRINADLILGMKKELASITAARTGKTVEQVEADGDRDHWFSAA 179 Query: 217 EAKKVGLIDVVGGQEEVW 234 EA + G +D V + Sbjct: 180 EALEYGFVDRVINSPDEI 197 >gi|238018907|ref|ZP_04599333.1| hypothetical protein VEIDISOL_00767 [Veillonella dispar ATCC 17748] gi|237864391|gb|EEP65681.1| hypothetical protein VEIDISOL_00767 [Veillonella dispar ATCC 17748] Length = 197 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 59/195 (30%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D + +I ++ + +D + + ++SPGG AG AI+ +Q +K Sbjct: 28 IIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMQYIKPDV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A + V L ++ Sbjct: 88 STICVGSAASMGAVLLTAGAKGKRYALPHARVMIHQPLGGVQGQASEIEIHARE------ 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + +++ + + Sbjct: 142 ------------------------ILRMREELNGILASRSGQDIEVVARDTDRDNFMSAQ 177 Query: 217 EAKKVGLIDVVGGQE 231 +A + GLID V +E Sbjct: 178 DAVEYGLIDEVLTRE 192 >gi|154500232|ref|ZP_02038270.1| hypothetical protein BACCAP_03896 [Bacteroides capillosus ATCC 29799] gi|150270964|gb|EDM98238.1| hypothetical protein BACCAP_03896 [Bacteroides capillosus ATCC 29799] Length = 245 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 58/198 (29%), Gaps = 25/198 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + ++ + I +++ L++ GG AG I I ++ + + Sbjct: 67 EHVMPLLAAIEESSEVDGVLILLNTVGGDIEAGLGIAELIASMRKPTVSLVLGGGHSIGV 126 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +S ++ I + + + + V + K Sbjct: 127 PLAVSAKTSFIAPSAAMTIHPVRLNGLVIGVPQTFYYFERIQDRIIQFVTKNSHVDRETF 186 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 R + L G + G EA K+GLID +GG Sbjct: 187 T-------------------------RMMLQTGELAADVGSVIYGEEAVKIGLIDRIGGL 221 Query: 231 EEVWQSLYALGVDQSIRK 248 + L+ + ++ R+ Sbjct: 222 SDALDCLHGMMEEEQQRR 239 >gi|126735733|ref|ZP_01751478.1| Periplasmic serine protease (ClpP class) [Roseobacter sp. CCS2] gi|126714920|gb|EBA11786.1| Periplasmic serine protease (ClpP class) [Roseobacter sp. CCS2] Length = 301 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 80/221 (36%), Gaps = 18/221 (8%) Query: 38 VARIAIRGQIEDSQ-------------ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 VA + +RG + + L + + +++ + A+++ + +PGG A E Sbjct: 55 VAVVPVRGLLTPNSYGLERWLGWTTYHGLADTMGQLAASEEVAAIVLEIDTPGGMVLAIE 114 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV--- 141 A AI KPV V MA SAGY ++ I + +GSIGV Sbjct: 115 AAGEAIAATAAVKPVHAVVCPMATSAGYWLASQCTDISMTPGAWIGSIGVQMSTYSPVQP 174 Query: 142 -KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 + ++ A P + + + + ++ ++ + Sbjct: 175 GMHGDQWFNFRSQYARAKNPDAATEPGTALIDQRLNALEADFHAAIAAGRGIAPADLPAR 234 Query: 201 YDKTLVLSDGRIWTG-AEAKKVGLIDVVGGQEEVWQSLYAL 240 T ++DG G EA+ GL D ++ + ++ Sbjct: 235 LSVTDDVADGGAVFGFQEARARGLADAQMTRDVFFADIFDK 275 >gi|323498276|ref|ZP_08103278.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sinaloensis DSM 21326] gi|323316704|gb|EGA69713.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sinaloensis DSM 21326] Length = 208 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + I ++K Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQ 161 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K L++E P + Sbjct: 162 KLNK------------------------------LLAEHTGQPLEVIERDTDRDNFMAAD 191 Query: 217 EAKKVGLIDVV 227 +A + GL+D V Sbjct: 192 QAVEYGLVDAV 202 >gi|223973663|gb|ACN31019.1| unknown [Zea mays] Length = 280 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I G +ED ++ ++ + D +I+ ++SPGGS AG AIF ++ ++ Sbjct: 105 IIRCGGPVEDDMANIIVAQLLYLDAIDPTKDIIMYVNSPGGSVTAGMAIFDTMKHIRPDV 164 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + + S + L + L+ + Sbjct: 165 STVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQANEM----- 219 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 ++ P DK + Sbjct: 220 -------------------------LHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAK 254 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 255 EAKEYGLIDGV 265 >gi|73663232|ref|YP_302013.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|124013830|sp|Q49VZ2|CLPP_STAS1 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|72495747|dbj|BAE19068.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 194 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + QI+D + ++ ++ + D+ + + ++SPGGS AG AI+ IQ +K Sbjct: 29 IIMLGSQIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + V L ++ Sbjct: 89 QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAN------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + ++++E +K + Sbjct: 142 -----------------------HILKTRAKLNQILAERTGQSIEKIEQDTDRDNFLSAE 178 Query: 217 EAKKVGLIDVVG 228 EAK GL+D V Sbjct: 179 EAKDYGLVDQVM 190 >gi|86158227|ref|YP_465012.1| hypothetical protein Adeh_1802 [Anaeromyxobacter dehalogenans 2CP-C] gi|85774738|gb|ABC81575.1| hypothetical protein Adeh_1802 [Anaeromyxobacter dehalogenans 2CP-C] Length = 632 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 78/248 (31%), Gaps = 31/248 (12%) Query: 45 GQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH 104 G + ++++ ++ER SRD + A+++ + S GGS++AG A+ A++ + + Sbjct: 34 GPVLQLRDVLAQLERASRDRAVGAVLLVVDSLGGSSWAGLALCEALRCLSEDGVRVVAHV 93 Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 A + ++ +V A V Sbjct: 94 AGTAGSAAAVAILGADVVTAAPGAVIHPH----------------------------GLC 125 Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD--GRIWTGAEAKKVG 222 P + V P + +V+++ L+S + D G A A VG Sbjct: 126 IPAAAVQPGGTRAALEVLEADAWLNAGLLSTRTLGRPEDIACWLDHPGEELAAARAVAVG 185 Query: 223 LIDVVGGQEEVWQSLYAL-GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 D V E + L + + + + + + + + Sbjct: 186 YADEVRDLEAARELARRLMAAPAQTERARKLEQLQVGEELEDAEAAARDIGAAILSALSC 245 Query: 282 TKVQGLWA 289 + L A Sbjct: 246 GILPELVA 253 >gi|312218146|emb|CBX98092.1| similar to ATP-dependent clp protease proteolytic subunit [Leptosphaeria maculans] Length = 206 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 63/197 (31%), Gaps = 31/197 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+++D S + ++ + D+ + + ++SPGGS AG AI+ + +++ Sbjct: 30 IICLNGEVDDFMSANCVAQLLFLEADNPEKPISMYINSPGGSVSAGLAIYDTMNYIRSPV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L A + V Y + I ++ Sbjct: 90 STICMGIAASMGSLLLAGGAEGHRYILPHARVMIHQPSGGYRGKASDIADHAKEILRIRD 149 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 K + V++ R ++ + + Sbjct: 150 KLNK--------------------------IYQSHVTKKR--TLEEIEKYMERDYFMDAQ 181 Query: 217 EAKKVGLIDVVGGQEEV 233 EA G++D + + E Sbjct: 182 EAVDFGIVDKILEKREA 198 >gi|332975388|gb|EGK12282.1| ATP-dependent Clp protease, protease subunit [Desmospora sp. 8437] Length = 192 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 66/191 (34%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G I+++ ++ ++ ++ DDS + + + SPGG AG AI+ ++ ++ Sbjct: 30 IVFLGGSIDEALAHSIVAQLLFLASDDSDKDIHLYIHSPGGDTTAGWAIYDTMRHIRPDI 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + +A + V ++ Sbjct: 90 STICIGMAASMGAVLLAAGTPGKRMALPHAEVMIHQPWGGTQGQASDIE----------- 138 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + +++++ P ++ +D + T Sbjct: 139 -------------------IRTRWMLRTKERINQVLADHTGQPVNRVKKDTDRDYFLTAE 179 Query: 217 EAKKVGLIDVV 227 EAK GLID + Sbjct: 180 EAKTYGLIDRI 190 >gi|209694398|ref|YP_002262326.1| ATP-dependent Clp protease proteolytic subunit [Aliivibrio salmonicida LFI1238] gi|226706438|sp|B6EHK3|CLPP_ALISL RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|208008349|emb|CAQ78503.1| ATP-dependent Clp protease proteolytic subunit [Aliivibrio salmonicida LFI1238] Length = 207 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 67/196 (34%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + + + + + Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLG---GFQGQASDIQIHAQEILT 158 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 K L++E P + +D + Sbjct: 159 IKKK---------------------------LNTLLAEHTGQPLEVIEKDTDRDNFMAAD 191 Query: 217 EAKKVGLIDVVGGQEE 232 +A K GL+D V + + Sbjct: 192 DAVKYGLVDAVLNKRD 207 >gi|188590743|ref|YP_001921998.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum E3 str. Alaska E43] gi|251778109|ref|ZP_04821029.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|226706443|sp|B2UX13|CLPP_CLOBA RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|188501024|gb|ACD54160.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum E3 str. Alaska E43] gi|243082424|gb|EES48314.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 199 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IIMLSGEVNDDSSNLIVSQLLFLESEDPDKDISIYINSPGGSITAGMAIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S A A + + L + + I +K Sbjct: 89 STICVGMAASMGAFLLSSGAKGKRYALPNAEIMIHQPLGGFQGQATDIQIHANRILKIKE 148 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 S K SE+ N P + + T Sbjct: 149 SLNKIL------------------------------SENTNQPLEVIEADVERDNFMTAD 178 Query: 217 EAKKVGLIDVVGG 229 EAK GL+D V Sbjct: 179 EAKAYGLVDKVIT 191 >gi|224147635|ref|XP_002336515.1| predicted protein [Populus trichocarpa] gi|222835812|gb|EEE74247.1| predicted protein [Populus trichocarpa] Length = 201 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 63/197 (31%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D + ++ + ++ + + ++SPGG +G A++ +Q +K+ Sbjct: 33 VIFLNGEVNDVVSALVCAQLLFLEAENPDKPIHLYINSPGGVITSGLAMYDTMQFIKSPV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + S+ + + + P + L + + Sbjct: 93 HTLC--------------------MGTARSMGSFLLMAGE-PGHRMALPNASLHVHQPLG 131 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + RL ++ Y++ L R T Sbjct: 132 GVQGQASDIRIHAEEMLR---------TKDRVTRLYAQHCGRSYEEVERDLDRDRFMTAE 182 Query: 217 EAKKVGLIDVVGGQEEV 233 EA++ GLID V + Sbjct: 183 EAREWGLIDKVLDRRTA 199 >gi|218290814|ref|ZP_03494883.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alicyclobacillus acidocaldarius LAA1] gi|218239172|gb|EED06373.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alicyclobacillus acidocaldarius LAA1] Length = 198 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 65/192 (33%), Gaps = 34/192 (17%) Query: 40 RIAIRGQIEDSQ---ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 RI I G D Q ++ ++ ++ DD + + ++SPGGS AG AI+ +Q ++ Sbjct: 29 RIVILGTPIDDQVANSIVAQLLFLAADDPEKDIQMYINSPGGSVTAGMAIYDTMQHIRPA 88 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 + + A L + A + + L V+ + + + + Sbjct: 89 VSTLCIGMAASMGAFLLAAGEKGKRYALPNAEIMIHQPLG---GVEGQASDIKIHAEWIL 145 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTG 215 + K RL+SE P + T Sbjct: 146 KTKDK---------------------------LNRLLSERTGQPLEVIERDTDRDHFMTA 178 Query: 216 AEAKKVGLIDVV 227 EAK GLID V Sbjct: 179 EEAKAYGLIDEV 190 >gi|332708809|ref|ZP_08428780.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lyngbya majuscula 3L] gi|332352351|gb|EGJ31920.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lyngbya majuscula 3L] Length = 230 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 31/179 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + ++ ++ + +D + + ++SPGGS AG AI+ +Q+V+ I + Sbjct: 66 ADSIVAQLLYLEAEDEEKDIQLYINSPGGSVTAGMAIYDTMQQVRPDVVTICYGLAASMG 125 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L A+ +A S + L ++ Sbjct: 126 AFLLAGGAAGKRMALPNSRIMIHQPLGGAQGQAVDIE----------------------- 162 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 + + +L++ P ++ ++ + + AEAK GLID V Sbjct: 163 -------IQAREILYHKQTLNQLLANHTGQPVEQIAEDTERDFFMSAAEAKDYGLIDQV 214 >gi|257899073|ref|ZP_05678726.1| serine protease [Enterococcus faecium Com15] gi|257836985|gb|EEV62059.1| serine protease [Enterococcus faecium Com15] Length = 241 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 71/207 (34%), Gaps = 37/207 (17%) Query: 41 IAIRGQIE-----DSQELIERIER-ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 + I G+I D+ ++ + + + + ++SPGGS + G AI +++ Sbjct: 18 VFIFGEIVSFKWDDTDTTAASFQKDLKELGEVSQINLHINSPGGSVFEGIAIGNMLRQH- 76 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + V+ V +AAS +I + + ++ E S++ + Sbjct: 77 -KARVVAHVDALAASIASVIVASCDEVIMPENSMLMIHN------------------PWT 117 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213 + K +++ A L + +K + D W Sbjct: 118 ISMGNAKELRKQADDLDKIAE----------SSVVTYLAKAGEKLTEEKIKQIMDEETWM 167 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYAL 240 + EA GL DVV +V S+ Sbjct: 168 SAQEAYNYGLCDVVESANQVAASISQK 194 >gi|218709954|ref|YP_002417575.1| hypothetical protein VS_1973 [Vibrio splendidus LGP32] gi|218322973|emb|CAV19150.1| hypothetical membrane protein [Vibrio splendidus LGP32] Length = 468 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 80/249 (32%), Gaps = 24/249 (9%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIE 58 M F+LK + ++ S V + V I + G I S L IE Sbjct: 1 MTFILKYLFAFLLLF-------------SSVFAQADDVWVIEVNGGIGPATSDYLTREIE 47 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCA 117 + D+ A +I+ +++PGG + I R+I + AASAG I A Sbjct: 48 QA-HDEQAKLIILKMNTPGGLDSSMRDIIRSITTSPIPVATWVGPAGSRAASAGTYILLA 106 Query: 118 SNIIVAAETS----LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 S++ A + V + P + +S A S+ Sbjct: 107 SHVASMAPGTNLGAATPVSLVGGKTPTNPLSPQDEANKDDNTSASEQDATKQENSDQVKA 166 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 M + V++ + + V L + + A + +ID + Sbjct: 167 TTAMEKKVINDAAAYIVSLAKLHNRNEEWAEKAVREAASLDSENALTLNVIDFIASD--- 223 Query: 234 WQSLYALGV 242 Q L L Sbjct: 224 LQQLVELSN 232 >gi|312882507|ref|ZP_07742248.1| ATP-dependent Clp protease proteolytic subunit [Vibrio caribbenthicus ATCC BAA-2122] gi|309369907|gb|EFP97418.1| ATP-dependent Clp protease proteolytic subunit [Vibrio caribbenthicus ATCC BAA-2122] Length = 208 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 63/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + + + + + Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLG---GFQGQASDIQIHAQEILT 158 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K L++E P D + Sbjct: 159 IKKK---------------------------LNTLLAEHTGQPLDVIERDTDRDNFMSAD 191 Query: 217 EAKKVGLIDVVGG 229 +A + GL+D + Sbjct: 192 QAVEYGLVDSMLT 204 >gi|258646880|ref|ZP_05734349.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dialister invisus DSM 15470] gi|260404319|gb|EEW97866.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dialister invisus DSM 15470] Length = 207 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 58/212 (27%), Gaps = 37/212 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G I+D +I + + +D + ++SPGG AG AI+ +Q ++ Sbjct: 29 IVFLDGPIDDHTANVIIAQFLFLEAEDPDKDIHFYINSPGGVVTAGMAIYDTMQYIRPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L + A + V L Sbjct: 89 STICIGSCASMAAVLLTAGEKGKRYALPHASVMIHQPLGGAQGQ---------------- 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + + +++ T Sbjct: 133 --------------ATDIAIHAKEIIRLRSELNGIIAAHSGQTLKTVMKDTERDNFMTAD 178 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 A K GLID + + E L L + K Sbjct: 179 AALKYGLIDKILTRNE----LAELNGKSELSK 206 >gi|153829246|ref|ZP_01981913.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio cholerae 623-39] gi|148875284|gb|EDL73419.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio cholerae 623-39] Length = 200 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 34 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 93 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + + + + + Sbjct: 94 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLG---GFQGQASDIQIHAQEILT 150 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K RL++E P + + Sbjct: 151 IKNK---------------------------LNRLLAEHTGQPIEVIERDTDRDNFMSAD 183 Query: 217 EAKKVGLIDVV 227 +A + GL+D V Sbjct: 184 QAVEYGLVDAV 194 >gi|313887837|ref|ZP_07821517.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846180|gb|EFR33561.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Peptoniphilus harei ACS-146-V-Sch2b] Length = 194 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D + ++ ++ + +D + + ++SPGGS AG AI+ + +K Sbjct: 29 IIFLSGEVNDTMADLIVAQLLFLEAEDPNKDIQLYINSPGGSVSAGFAIYDTMNYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S A A S + + + ++ + + Sbjct: 89 STICIGMAASMGAFLLASGAKGKRFALPNSDIMIHQPSG---GAQGQASDIQINAEKILK 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 K +E +K +D W Sbjct: 146 IRHKLNEIL---------------------------AERTGQDLEKIEKDTDRDYWLNSQ 178 Query: 217 EAKKVGLIDVV 227 EAK GLID V Sbjct: 179 EAKDYGLIDKV 189 >gi|241894905|ref|ZP_04782201.1| ATP-dependent Clp protease proteolytic subunit [Weissella paramesenteroides ATCC 33313] gi|241871913|gb|EER75664.1| ATP-dependent Clp protease proteolytic subunit [Weissella paramesenteroides ATCC 33313] Length = 242 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 66/207 (31%), Gaps = 45/207 (21%) Query: 30 HVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPGGSA 80 ++ VA I I G+I + + + ++ + + +S++SPGGS Sbjct: 4 QMKATDNEVAEIHIDGEIVSEKLWDSDVSATDFRDSLKELG---PVKTINMSINSPGGSV 60 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + G AI+ ++K V +AAS +I+ A + + S++ Sbjct: 61 FDGIAIYNMLKKNPATVNVTV--EGLAASIASVIAMAGDTLTMDTGSMLMIHNPFTMAVG 118 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L ++ ++ + V + E I Sbjct: 119 NASELREMADTLDQI------------------------------RESSVNIYHEKTGID 148 Query: 201 YDKTLVLSDGRIW-TGAEAKKVGLIDV 226 + + D W T EA G D Sbjct: 149 KEAIKSVMDNETWLTADEAITAGWADQ 175 >gi|254491593|ref|ZP_05104772.1| Nodulation efficiency protein D [Methylophaga thiooxidans DMS010] gi|224463071|gb|EEF79341.1| Nodulation efficiency protein D [Methylophaga thiooxydans DMS010] Length = 457 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 70/220 (31%), Gaps = 13/220 (5%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALI 70 ++ +L + V + +S I I G I + +E+ D +A + Sbjct: 4 MLFALFSFVWVCCLPVNIAAADSEQAYIIDIDGIISPATADYFTRSLEKAI-DANAALFL 62 Query: 71 VSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 V L +PGG I + I +T AASAG + AS+I + + Sbjct: 63 VRLDTPGGLDVSMRGMIKQIIASPVPIVMYVTPGGARAASAGTYLLYASHIAAMTPATNL 122 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 G+ + P KS K M + VV+ + + Sbjct: 123 GAATPVQLKP---------SFISDEDKSPQEKTNKETEPNTTRSDDAMTRKVVNDAVAYI 173 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 L + D T A ++ +ID+V Sbjct: 174 KGLADLHNRNKDWAEKAVRDAASLTAEAALELKVIDIVAN 213 >gi|195640846|gb|ACG39891.1| ATP-dependent Clp protease proteolytic subunit 1 [Zea mays] Length = 281 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I G +ED ++ ++ + D +I+ ++SPGGS AG AIF ++ ++ Sbjct: 106 IIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTMKHIRPDV 165 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + + S + L + L+ + Sbjct: 166 STVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQANEM----- 220 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 ++ P DK + Sbjct: 221 -------------------------LHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAK 255 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 256 EAKEYGLIDGV 266 >gi|148543625|ref|YP_001270995.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus reuteri DSM 20016] gi|184153034|ref|YP_001841375.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus reuteri JCM 1112] gi|194468177|ref|ZP_03074163.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus reuteri 100-23] gi|227363410|ref|ZP_03847534.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus reuteri MM2-3] gi|227545094|ref|ZP_03975143.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus reuteri CF48-3A] gi|300909236|ref|ZP_07126697.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus reuteri SD2112] gi|325681981|ref|ZP_08161499.1| ATP-dependent Clp protease, protease subunit [Lactobacillus reuteri MM4-1A] gi|167008650|sp|A5VII4|CLPP_LACRD RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|226706458|sp|B2G613|CLPP_LACRJ RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|148530659|gb|ABQ82658.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lactobacillus reuteri DSM 20016] gi|183224378|dbj|BAG24895.1| endopeptidase Clp proteolytic subunit [Lactobacillus reuteri JCM 1112] gi|194453030|gb|EDX41928.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus reuteri 100-23] gi|227071510|gb|EEI09809.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus reuteri MM2-3] gi|227184943|gb|EEI65014.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus reuteri CF48-3A] gi|300893101|gb|EFK86460.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus reuteri SD2112] gi|324978625|gb|EGC15574.1| ATP-dependent Clp protease, protease subunit [Lactobacillus reuteri MM4-1A] Length = 197 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 60/192 (31%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IED + ++ ++ + DS + + ++SPGG +G AI+ + +K Sbjct: 29 IIMLSGPIEDEMANSIVAQLLFLDAQDSTKDIYLYINSPGGVVTSGMAIYDTMNFIKADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ + S A S V + ++ Sbjct: 89 QTIVIGMAASMASVLVSSGAKGKRFGLPHSQVLIHQPSGGAQGQQTEIEIAATE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + +++++ P +K T Sbjct: 143 ------------------------ILKTRKMLNGILAKNSGQPIEKIQADTERDHYLTAQ 178 Query: 217 EAKKVGLIDVVG 228 EA GL+D V Sbjct: 179 EAVDYGLLDGVM 190 >gi|255321158|ref|ZP_05362324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter radioresistens SK82] gi|262380154|ref|ZP_06073309.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter radioresistens SH164] gi|255301712|gb|EET80963.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter radioresistens SK82] gi|262298348|gb|EEY86262.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter radioresistens SH164] Length = 201 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED+ ++ ++ + ++ + + ++SPGGS AG AI+ +Q +K Sbjct: 36 VIFLTGEVEDNMANLIVAQMLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKPDV 95 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L + A E + V L + ++ I + Sbjct: 96 VTYCMGQAASMGAFLLNAGAKGKRFCLENARVMIHQPLGGFRGQASDIEIHAREILFI-- 153 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 RL++E Y++ T Sbjct: 154 ----------------------------KERLNRLMAEHSGQDYERIARDTDRDNFMTAQ 185 Query: 217 EAKKVGLIDVV 227 AK+ GL+D V Sbjct: 186 AAKEYGLVDEV 196 >gi|332992307|gb|AEF02362.1| ATP-dependent Clp protease proteolytic subunit [Alteromonas sp. SN2] Length = 209 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG AI+ + +K Sbjct: 38 VIFLVGQVEDHMANLIVAQMLFLEAENPEKDIFLYINSPGGSVTAGMAIYDTMNFIKPDV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + I S+ Sbjct: 98 STVCVGQAASMGAFLLSGGAKGKRYCLPNSRVMIHQPLGGFQGQASDFEIHAKEILSI-- 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 RL+++ Y+K + Sbjct: 156 ----------------------------KEKLNRLMAQHTGQDYEKVAHDTDRDNFLSAT 187 Query: 217 EAKKVGLIDVVGG 229 EAK+ GLID V Sbjct: 188 EAKEYGLIDQVMT 200 >gi|213521159|gb|ACJ50516.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas fluorescens] Length = 211 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 60/197 (30%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 45 VIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L + A S V L + ++ I + Sbjct: 105 STTCIGQACSMGAFLLTAGAEGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFI-- 162 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L+++ ++ + + Sbjct: 163 ----------------------------RERLNTLMAKHSGRTLEEIERDTNRDNFMSAE 194 Query: 217 EAKKVGLIDVVGGQEEV 233 AK+ GLID V + Sbjct: 195 AAKEYGLIDAVIDKRPA 211 >gi|282900572|ref|ZP_06308514.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505] gi|281194372|gb|EFA69327.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505] Length = 194 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 31/179 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + ++ + + DD + + ++SPGGS AG AI+ IQ +K+ I + Sbjct: 44 ANAIVAYLLYLDSDDQTKPIYLYINSPGGSVTAGMAIYDTIQYIKSEVVTICVGLAASMG 103 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 + L + A +A S + ++ I ++ Sbjct: 104 SFLLAAGAKGKRLALPHSRIMIHQPSGGTRGQASDIEIEAREILRIRH------------ 151 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 ++ +++ K D + + EAK+ GLID V Sbjct: 152 ------------------QLNQIYADNTGQVLSKIEKDMDRDFFMSAQEAKEYGLIDRV 192 >gi|56460113|ref|YP_155394.1| ATP-dependent Clp protease proteolytic subunit [Idiomarina loihiensis L2TR] gi|67460202|sp|Q5QXN8|CLPP_IDILO RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|56179123|gb|AAV81845.1| Protease subunit of ATP-dependent Clp protease [Idiomarina loihiensis L2TR] Length = 206 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 53/176 (30%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + D+ + + ++SPGG AG AI+ ++ +K + + A Sbjct: 53 IVAQLLFLESDNPDKDIYLYINSPGGVVTAGMAIYDTMRFIKPDVSTVCMGQAASMGAFL 112 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L A S V L + + Sbjct: 113 LAGGAQGKRYCLPNSRVMIHQPLGGFQGQASDFE-------------------------- 146 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227 + + R+++E+ Y+K + E+ GL+D + Sbjct: 147 ----IHAKQILDLKERLNRMLAENTGQDYEKVARDTDRDHFLSAEESIDYGLVDGI 198 >gi|260887080|ref|ZP_05898343.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas sputigena ATCC 35185] gi|330839143|ref|YP_004413723.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas sputigena ATCC 35185] gi|260863142|gb|EEX77642.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas sputigena ATCC 35185] gi|329746907|gb|AEC00264.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas sputigena ATCC 35185] Length = 206 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 63/194 (32%), Gaps = 33/194 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G I+D+ ++ ++ + +D + + ++SPGG AG AI+ +Q ++ Sbjct: 34 IVFVGGPIDDNVANVVVAQLLFLESEDPDKDIHLYINSPGGVVTAGLAIYDTMQYIRPDV 93 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + + L Sbjct: 94 STICIGQAASMGSLLLTAGAKGKRYALPLARIMIHQPLGGAQGQST-------------- 139 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216 +Q+ + ++++ P +K T Sbjct: 140 ----------------DIQIQAKEILRLREVGNDILAKHTGQPREKLIADTERDNFMTAE 183 Query: 217 EAKKVGLIDVVGGQ 230 EAK+ GLID V + Sbjct: 184 EAKEYGLIDEVITR 197 >gi|239995517|ref|ZP_04716041.1| ATP-dependent Clp protease proteolytic subunit [Alteromonas macleodii ATCC 27126] Length = 209 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 68/200 (34%), Gaps = 34/200 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG AI+ ++ +K Sbjct: 38 VIFLVGQVEDHMANLIVAQMLFLEAENPEKDIFLYINSPGGSVTAGMAIYDTMKFIKPDV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A S V L + + I S+ Sbjct: 98 STVCMGQAASMGAFLLSAGAKGKRYCLPNSRVMIHQPLGGFQGQASDFEIHAKEILSI-- 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 RL+++ Y+K + Sbjct: 156 ----------------------------KEKLNRLMADHTGQDYEKVARDTDRDNFLSAT 187 Query: 217 EAKKVGLIDV-VGGQEEVWQ 235 EAK+ GL+D + + +V Sbjct: 188 EAKEYGLVDQVLANRSDVAA 207 >gi|295705906|ref|YP_003598981.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus megaterium DSM 319] gi|294803565|gb|ADF40631.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus megaterium DSM 319] Length = 193 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I +I D + ++ ++ ++ DD + + ++SPGGS AG AI+ +Q ++ Sbjct: 29 IILIGDEINDHIANSVVAQLLFLAADDPKKDISLYINSPGGSTSAGFAIYDTMQYIEPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L++ A A S V L ++ Sbjct: 89 QTICTGMAASFGALLLLAGAKGKRYALPNSEVMIHQPLGGARGQATEIEISARR------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + ++S P +K + Sbjct: 143 ------------------------ILKLKQHINEIISTRTGQPVEKVANDTERDYFMSAE 178 Query: 217 EAKKVGLIDVV 227 EAK G+ID + Sbjct: 179 EAKTYGIIDGI 189 >gi|240103959|ref|YP_002960268.1| Membrane bound protease, putative, nfeD/ClpP- family (nfeD) [Thermococcus gammatolerans EJ3] gi|239911513|gb|ACS34404.1| Membrane bound protease, putative, nfeD/ClpP- family (nfeD) [Thermococcus gammatolerans EJ3] Length = 454 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 72/190 (37%), Gaps = 10/190 (5%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSA 66 ++ +++L L+ L V S N V G I + IE ++ +A Sbjct: 10 RSAFIILVLMLLPAVLASP------NQKTVYVAKFEGVITSYSVDQFSRYIEIAEKN-NA 62 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAE 125 ALI+ + +PGGS A + I + I++ K + +AASAG I+ S++I A Sbjct: 63 EALIIEIDTPGGSGQAMQEIIQRIKESKVPVIIYVYPPGAIAASAGTYIALGSHLIAMAP 122 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 ++ +G+ + Y + + + V + +D+ + Sbjct: 123 STSIGACEPIMGYASNGSIIKAPAKVRNFYVAYIKSLAEASGRNVTAAERFITEDLSLTP 182 Query: 186 YHWFVRLVSE 195 V E Sbjct: 183 EEALRAHVIE 192 >gi|121727845|ref|ZP_01680912.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio cholerae V52] gi|229507982|ref|ZP_04397487.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae BX 330286] gi|229511781|ref|ZP_04401260.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae B33] gi|229515308|ref|ZP_04404768.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae TMA 21] gi|229518918|ref|ZP_04408361.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae RC9] gi|229523942|ref|ZP_04413347.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae bv. albensis VL426] gi|229529052|ref|ZP_04418442.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae 12129(1)] gi|229607528|ref|YP_002878176.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae MJ-1236] gi|254849010|ref|ZP_05238360.1| ATP-dependent Clp protease [Vibrio cholerae MO10] gi|255745319|ref|ZP_05419268.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholera CIRS 101] gi|262156043|ref|ZP_06029163.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae INDRE 91/1] gi|262167884|ref|ZP_06035584.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae RC27] gi|297579440|ref|ZP_06941368.1| ATP-dependent Clp protease [Vibrio cholerae RC385] gi|298498040|ref|ZP_07007847.1| clp protease [Vibrio cholerae MAK 757] gi|121629881|gb|EAX62295.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio cholerae V52] gi|229332826|gb|EEN98312.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae 12129(1)] gi|229337523|gb|EEO02540.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae bv. albensis VL426] gi|229343607|gb|EEO08582.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae RC9] gi|229348013|gb|EEO12972.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae TMA 21] gi|229351746|gb|EEO16687.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae B33] gi|229355487|gb|EEO20408.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae BX 330286] gi|229370183|gb|ACQ60606.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae MJ-1236] gi|254844715|gb|EET23129.1| ATP-dependent Clp protease [Vibrio cholerae MO10] gi|255737149|gb|EET92545.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholera CIRS 101] gi|262023611|gb|EEY42312.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae RC27] gi|262030221|gb|EEY48865.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae INDRE 91/1] gi|297537034|gb|EFH75867.1| ATP-dependent Clp protease [Vibrio cholerae RC385] gi|297542373|gb|EFH78423.1| clp protease [Vibrio cholerae MAK 757] gi|327484465|gb|AEA78872.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae LMA3894-4] Length = 208 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + + + + + Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLG---GFQGQASDIQIHAQEILT 158 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K RL++E P + + Sbjct: 159 IKNK---------------------------LNRLLAEHTGQPIEVIERDTDRDNFMSAD 191 Query: 217 EAKKVGLIDVV 227 +A + GL+D V Sbjct: 192 QAVEYGLVDAV 202 >gi|15641924|ref|NP_231556.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|147674197|ref|YP_001217455.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae O395] gi|153824129|ref|ZP_01976796.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio cholerae B33] gi|153826398|ref|ZP_01979065.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio cholerae MZO-2] gi|227082052|ref|YP_002810603.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio cholerae M66-2] gi|254286858|ref|ZP_04961810.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio cholerae AM-19226] gi|18203199|sp|Q9KQS6|CLPP_VIBCH RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|172047646|sp|A5F6X0|CLPP_VIBC3 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|254763808|sp|C3LNM6|CLPP_VIBCM RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|9656458|gb|AAF95070.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126518348|gb|EAZ75571.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio cholerae B33] gi|146316080|gb|ABQ20619.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio cholerae O395] gi|149739876|gb|EDM54067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio cholerae MZO-2] gi|150423008|gb|EDN14957.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio cholerae AM-19226] gi|227009940|gb|ACP06152.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio cholerae M66-2] gi|227013820|gb|ACP10030.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio cholerae O395] Length = 200 Score = 46.1 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 34 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 93 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + + + + + Sbjct: 94 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLG---GFQGQASDIQIHAQEILT 150 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K RL++E P + + Sbjct: 151 IKNK---------------------------LNRLLAEHTGQPIEVIERDTDRDNFMSAD 183 Query: 217 EAKKVGLIDVV 227 +A + GL+D V Sbjct: 184 QAVEYGLVDAV 194 >gi|325474230|gb|EGC77418.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema denticola F0402] Length = 197 Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 62/195 (31%), Gaps = 33/195 (16%) Query: 40 RIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I + ++ ++ + + + + ++SPGGS AG AI+ +Q ++ Sbjct: 30 IIFVDGEINDMSADLVVAQLLFLEAQNPDKDISLYINSPGGSVTAGLAIYDTMQHIRPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A N A +S V ++ I +K Sbjct: 90 QTICLGQCASMGAVLLAGGAKNKRYALPSSRVMIHQPWGGVQGQAVDINIQAKEIVRLKK 149 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +K +E+ + + + + Sbjct: 150 LTIKYF------------------------------AENTGKTEKQVAADMERDFFMSAE 179 Query: 217 EAKKVGLIDVVGGQE 231 EA G+ID V + Sbjct: 180 EALAYGIIDTVMNRR 194 >gi|262373455|ref|ZP_06066733.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter junii SH205] gi|262311208|gb|EEY92294.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter junii SH205] Length = 201 Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED+ ++ ++ + ++ + + ++SPGGS AG AI+ +Q +K Sbjct: 36 VIFLTGEVEDNMANLIVAQMLFLEAENPEKDIHLYINSPGGSVTAGMAIYDTMQFIKPDV 95 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L + A E + V L + ++ I + Sbjct: 96 VTYCMGQAASMGAFLLNAGAKGKRYCLENARVMIHQPLGGFRGQASDIEIHAREILFI-- 153 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 RL+++ Y+ T Sbjct: 154 ----------------------------KERLNRLMAQHSGQDYETVARDTDRDNFMTAE 185 Query: 217 EAKKVGLIDVV 227 AK+ GL+D V Sbjct: 186 AAKQYGLVDQV 196 >gi|226311643|ref|YP_002771537.1| hypothetical protein BBR47_20560 [Brevibacillus brevis NBRC 100599] gi|226094591|dbj|BAH43033.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC 100599] Length = 447 Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 90/253 (35%), Gaps = 28/253 (11%) Query: 2 EFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERI 60 V +++ + +L L+ + F+ +S I + IE + + R Sbjct: 5 RLVKSRVRLLFSLLCLIMGMTMLFAPASTTAKTYQKAVWIPVDSTIERGLESFLHRAFAD 64 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 ++ A +I+ +++PGG A + I + I++ VI + A SAG I+ +N Sbjct: 65 AQQQQADLVILHINTPGGEVNAADQIGQLIRQAP--MHVIAYIDNQAFSAGTYIALNANE 122 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 I+ S +G+ + + + S S+ MKA + A M++ Sbjct: 123 IIMTPGSSMGAATPI------DLAGNAADIKFISGWSNKMKAAAELNNRNPDVARAMVEI 176 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 + V +AK++G D V +E + L L Sbjct: 177 DTEFPGLKPKGTVLS-----------------LDAQQAKRLGYADDVVSNKE--ELLKKL 217 Query: 241 GVDQSIRKIKDWN 253 G+ + + Sbjct: 218 GIQPDSLQAIEPT 230 >gi|262198158|ref|YP_003269367.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haliangium ochraceum DSM 14365] gi|262081505|gb|ACY17474.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haliangium ochraceum DSM 14365] Length = 207 Score = 45.8 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 57/176 (32%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 +I ++ + +D +++ ++SPGGS AG AI+ +Q ++ I + A Sbjct: 52 IIAQLLHLESEDPEKDIMLYINSPGGSVTAGLAIYDTMQYLRCDVATICMGQASSMGAFL 111 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A A + V L + +D + Sbjct: 112 LAAGAKGKRFALPHARVMIHQPLGGFSGPATDIDIYAREV-------------------- 151 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227 + R+++E P D+ + EA GLID V Sbjct: 152 ----------LKTRETLNRVLAEHTGQPLDRIAEDTERDYFMSADEACAYGLIDEV 197 >gi|52786465|ref|YP_092294.1| YqeZ [Bacillus licheniformis ATCC 14580] gi|163119554|ref|YP_079877.2| intermembrane protease YqeZ [Bacillus licheniformis ATCC 14580] gi|52348967|gb|AAU41601.1| YqeZ [Bacillus licheniformis ATCC 14580] gi|145903062|gb|AAU24239.2| intermembrane protease YqeZ [Bacillus licheniformis ATCC 14580] Length = 439 Score = 45.8 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 4/133 (3%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISR 62 +LKK + +V L+ + + V+ + V I I +E + +ER + + Sbjct: 2 LLKKFR-IFVALACGFVLFLLLGVHLTVKADGDTVYVIPIEETVEKGLSKFLERSFQEAE 60 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D A +I+ +++PGG+ A + I + PV V+ A SAG ++ ++ I Sbjct: 61 DMYAKHIILDINTPGGAVDAVLDMADTI--HNSDIPVTAYVNRRALSAGAYLALNADDIY 118 Query: 123 AAETSLVGSIGVL 135 A +G+ ++ Sbjct: 119 MAPGGKMGAAAII 131 >gi|169634426|ref|YP_001708162.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter baumannii SDF] gi|169797267|ref|YP_001715060.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter baumannii AYE] gi|184156807|ref|YP_001845146.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter baumannii ACICU] gi|213155939|ref|YP_002317984.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter baumannii AB0057] gi|215484708|ref|YP_002326943.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter baumannii AB307-0294] gi|239500790|ref|ZP_04660100.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter baumannii AB900] gi|260549098|ref|ZP_05823319.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp. RUH2624] gi|260556149|ref|ZP_05828368.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter baumannii ATCC 19606] gi|301346762|ref|ZP_07227503.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter baumannii AB056] gi|301512252|ref|ZP_07237489.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter baumannii AB058] gi|301594241|ref|ZP_07239249.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter baumannii AB059] gi|332851226|ref|ZP_08433299.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Acinetobacter baumannii 6013150] gi|332866080|ref|ZP_08436808.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Acinetobacter baumannii 6013113] gi|332873220|ref|ZP_08441177.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Acinetobacter baumannii 6014059] gi|169150194|emb|CAM88088.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) (Caseinolytic protease) (Protease Ti) (Heat shock protein F21.5) [Acinetobacter baumannii AYE] gi|169153218|emb|CAP02314.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) (Caseinolytic protease) (Protease Ti) (Heat shock protein F21.5) [Acinetobacter baumannii] gi|183208401|gb|ACC55799.1| Protease subunit of ATP-dependent Clp protease [Acinetobacter baumannii ACICU] gi|193076289|gb|ABO10931.2| ATP-dependent Clp protease proteolytic subunit [Acinetobacter baumannii ATCC 17978] gi|213055099|gb|ACJ40001.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter baumannii AB0057] gi|213988734|gb|ACJ59033.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter baumannii AB307-0294] gi|260407826|gb|EEX01298.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp. RUH2624] gi|260410204|gb|EEX03503.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter baumannii ATCC 19606] gi|322506699|gb|ADX02153.1| clpP [Acinetobacter baumannii 1656-2] gi|323516573|gb|ADX90954.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter baumannii TCDC-AB0715] gi|332730106|gb|EGJ61433.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Acinetobacter baumannii 6013150] gi|332734826|gb|EGJ65919.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Acinetobacter baumannii 6013113] gi|332738732|gb|EGJ69602.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Acinetobacter baumannii 6014059] Length = 201 Score = 45.8 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED+ ++ ++ + ++ + + ++SPGGS AG AI+ +Q +K Sbjct: 36 VIFLTGEVEDNMANLIVAQMLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKPDV 95 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L + A E + V L + ++ I + Sbjct: 96 VTYCMGQAASMGAFLLNAGAKGKRYCLENARVMIHQPLGGFRGQASDIEIHAREILFI-- 153 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 RL++E YD T Sbjct: 154 ----------------------------KERLNRLMAEHSGQDYDTIARDTDRDNFMTAQ 185 Query: 217 EAKKVGLIDVV 227 AK+ GL+D V Sbjct: 186 AAKEYGLVDQV 196 >gi|326505348|dbj|BAK03061.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 284 Score = 45.8 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I G +ED ++ ++ + D +I+ ++SPGGS AG AIF ++ ++ Sbjct: 109 IIRCGGPVEDDMANVIVAQLLYLDAVDPNKDIIMYVNSPGGSVTAGMAIFDTMKHIRPDV 168 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + S + L + L+ + Sbjct: 169 STVCIGLAASMGAFLLSGGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQANEM----- 223 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 ++ P DK V +D + + Sbjct: 224 -------------------------LHHKANLNGYLAYHTGQPLDKINVDTDRDFFMSAK 258 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 259 EAKEYGLIDGV 269 >gi|114778396|ref|ZP_01453243.1| probable transmembrane protein [Mariprofundus ferrooxydans PV-1] gi|114551359|gb|EAU53916.1| probable transmembrane protein [Mariprofundus ferrooxydans PV-1] Length = 454 Score = 45.8 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 90/246 (36%), Gaps = 23/246 (9%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDS 65 + TR +ML ++L + PH + I+G I + +++ + + Sbjct: 3 VFTRILMLLCISLIA-----HTSPAQAVPHALVLDIQGAIGPAVAEDVHNTLAQAGD--- 54 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAA 124 A +I+ + +PGG + I + I + AASAG I AS+I + Sbjct: 55 AGLVILRMDTPGGLDQSMRKIIQDILASPVPVATFVAPQGARAASAGTYILYASHIAAMS 114 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 + +G+ + KP + SP SP + + V D+ Sbjct: 115 PATNLGAATPVQIGALPKP----------DIPRSPSVKGSSPETPEESGNPMQHKMVNDA 164 Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVD 243 + + RN+ + + + + +A K+G+ID++ ++ + + V Sbjct: 165 TAYIRSLAQLRHRNVEWAEL-AVRKAASLSADQALKMGVIDLIAQDIPQLLKKVDGRTVS 223 Query: 244 QSIRKI 249 + Sbjct: 224 TGNASV 229 >gi|261209157|ref|ZP_05923553.1| serine protease [Enterococcus faecium TC 6] gi|289566715|ref|ZP_06447130.1| serine protease [Enterococcus faecium D344SRF] gi|260076870|gb|EEW64601.1| serine protease [Enterococcus faecium TC 6] gi|289161485|gb|EFD09370.1| serine protease [Enterococcus faecium D344SRF] Length = 241 Score = 45.8 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 71/207 (34%), Gaps = 37/207 (17%) Query: 41 IAIRGQIE-----DSQELIERIER-ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 + I G+I D+ ++ + + + + ++SPGGS + G AI +++ Sbjct: 18 VFIFGEIVSFKWDDTDTTAASFQKDLKELGEVSQINLHINSPGGSVFEGIAIGNMLRQH- 76 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + V+ V +AAS +I + + ++ E S++ + Sbjct: 77 -KARVVAHVDALAASIASVIVASCDEVIMPENSMLMIHN------------------PWT 117 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213 + K +++ A L + +K + D W Sbjct: 118 ISMGNAKELRKQADDLDKIAE----------SSVVTYLAKAGEKLTEEKIKQIMDEETWM 167 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYAL 240 + EA GL DVV +V S+ Sbjct: 168 SAQEAYNYGLCDVVESANQVAASISQK 194 >gi|218897608|ref|YP_002446019.1| phage protein [Bacillus cereus G9842] gi|218544209|gb|ACK96603.1| phage protein [Bacillus cereus G9842] Length = 260 Score = 45.8 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 66/204 (32%), Gaps = 45/204 (22%) Query: 41 IAIRGQIEDSQELI------------ERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 I ++G I + E+ +I + D + L+VS++SPGG + G I+ Sbjct: 5 IDVKGPIISNDEVWIYDWFEMDAASPGKISKALEDANGDDLVVSINSPGGYVHEGSEIYT 64 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 A++ V +AASA +I+ A++ + + T+ + Sbjct: 65 ALKNYPGHVEVQIVG--LAASAASVIAMAADKVRISPTAQIMIHNASM------------ 110 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 + + ++ V S ++ L + Sbjct: 111 ------WNGGDHRDMSKAAEMLKTTDRAIVNAYVIKS------------GKSEEELLNMM 152 Query: 209 DGRIWTG-AEAKKVGLIDVVGGQE 231 W G +A + +D + + Sbjct: 153 AEETWMGPQQALENNFVDEIMFMD 176 >gi|259502747|ref|ZP_05745649.1| ATP-dependent Clp protease [Lactobacillus antri DSM 16041] gi|312870316|ref|ZP_07730444.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Lactobacillus oris PB013-T2-3] gi|259169392|gb|EEW53887.1| ATP-dependent Clp protease [Lactobacillus antri DSM 16041] gi|311094200|gb|EFQ52516.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Lactobacillus oris PB013-T2-3] Length = 197 Score = 45.8 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 55/191 (28%), Gaps = 31/191 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IED + ++ ++ + DS + + ++SPGG +G AI+ + +K+ Sbjct: 29 IIMLSGPIEDEMANSIVAQLLFLDAQDSTKDIYLYINSPGGVVTSGMAIYDTMNFIKSDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ + S S V Sbjct: 89 QTIVIGMAASMASVLVSSGTKGKRFGLPHSQVLIHQPSG--------------------- 127 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + + + +R+ D T E Sbjct: 128 GAQGQQTEIEIAATEILKTRKMINEILAKNSGQPIEKINRDTERD--------HYLTAQE 179 Query: 218 AKKVGLIDVVG 228 A GL+D + Sbjct: 180 AVDYGLLDGIM 190 >gi|296423577|ref|XP_002841330.1| hypothetical protein [Tuber melanosporum Mel28] gi|295637567|emb|CAZ85521.1| unnamed protein product [Tuber melanosporum] Length = 242 Score = 45.8 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 61/191 (31%), Gaps = 31/191 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + ++SPGGS AG AI+ + ++ Sbjct: 67 IICLNGPVHDGISAVVVAQLLFLEAENPEKQINLYINSPGGSVTAGLAIYDTMNYIQAPV 126 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L A + S+ V + + + K + Sbjct: 127 STICIGQAASMGSLLLCGGTKGKRYALPHA---SVMVHQPSILMTKGNSDIAIHAKEILR 183 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 + + + + + ++ G Sbjct: 184 VRERLNIIYQKHLTKP-------------------------HTLAQIEKIMERDLFMGAE 218 Query: 217 EAKKVGLIDVV 227 EAK++GL+D + Sbjct: 219 EAKEMGLVDEI 229 >gi|289422712|ref|ZP_06424552.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptostreptococcus anaerobius 653-L] gi|289156891|gb|EFD05516.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptostreptococcus anaerobius 653-L] Length = 194 Score = 45.8 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 54/176 (30%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + DD + + ++SPGGS AG AI+ +Q +K I + A Sbjct: 44 VVAQMLFLEADDPDKDIHLYINSPGGSVTAGMAIYDTMQYIKADVSTICVGMAASMGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A A S V L ++ + S+K K Sbjct: 104 LAAGAKGKRYALPNSTVMIHQPLGGTRGQATDIEIHTKYLLSIKEKLNKIL--------- 154 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVV 227 +E + T EA+ GLID V Sbjct: 155 ---------------------AERTGQDLETVKANTERDNFMTADEARDFGLIDEV 189 >gi|219870832|ref|YP_002475207.1| Clp protease-like protein [Haemophilus parasuis SH0165] gi|219691036|gb|ACL32259.1| Clp protease-like protein [Haemophilus parasuis SH0165] Length = 655 Score = 45.8 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 26/204 (12%), Positives = 61/204 (29%), Gaps = 40/204 (19%) Query: 39 ARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 A I+I +I +Q+ + ++ + + + + SPGGS + G AI+ ++ Sbjct: 14 AEISIMDEIGGWGISAQQFAKDLKNLGD---IKHIDLHIHSPGGSVFDGIAIYNLLKNHP 70 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 K V + S+ I +L + + Sbjct: 71 ASKTVYID--------------------GLAASMASVIAMLGDPVIMPKNAMMMIHKPWG 110 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213 ++S + ++ + + +E ++ + W Sbjct: 111 IQSGDAEDMRKYADLLDKIE------------NTTIPAYAEKTGKSPEELAEMLKEETWL 158 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSL 237 T E + G D + + S+ Sbjct: 159 TAEECVEQGFADKLAEPIKAMASI 182 >gi|262369923|ref|ZP_06063250.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter johnsonii SH046] gi|262314962|gb|EEY96002.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter johnsonii SH046] Length = 201 Score = 45.8 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED+ ++ ++ + ++ + + ++SPGGS AG AI+ +Q +K Sbjct: 36 VIFMTGEVEDNMANLIVAQMLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKPDV 95 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L S A E + V L + ++ I + Sbjct: 96 VTYCMGQAASMGAFLLNSGAKGKRYCLENARVMIHQPLGGFRGQASDIEIHAREILFI-- 153 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 RL++E Y+ T Sbjct: 154 ----------------------------KERLNRLMAEHSGQDYETVARDTDRDNFMTAQ 185 Query: 217 EAKKVGLIDVV 227 AK+ GL+D V Sbjct: 186 AAKEYGLVDEV 196 >gi|332669945|ref|YP_004452953.1| endopeptidase Clp [Cellulomonas fimi ATCC 484] gi|332338983|gb|AEE45566.1| Endopeptidase Clp [Cellulomonas fimi ATCC 484] Length = 233 Score = 45.8 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 66/180 (36%), Gaps = 27/180 (15%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D + + ++SPGGS A AI+ +Q +K + + Sbjct: 66 ASADDVMAQLLVLESTDPDRDITLYINSPGGSFTALTAIYDTMQYIKPELVTVCLGQAAS 125 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + + N +A + V + D + + ++ Sbjct: 126 AAAVLLAAGSPNKRLALPNARVLIHQPAMEGGGYAQASDIEIHANELIRM---------- 175 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 + +++ + + LV + + +I T +AK+ G++D V Sbjct: 176 -------REWLEETLAHHTGRDLGLVRK----------DIERDKILTAQQAKEYGIVDQV 218 >gi|315634780|ref|ZP_07890062.1| ATP-dependent Clp protease proteolytic subunit [Aggregatibacter segnis ATCC 33393] gi|315476332|gb|EFU67082.1| ATP-dependent Clp protease proteolytic subunit [Aggregatibacter segnis ATCC 33393] Length = 193 Score = 45.8 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED+ ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 VIFLSGEVEDNMANLIVAQLLFLESEDPDKDINLYINSPGGSVTAGMAIYDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A A + V L + Sbjct: 89 RTLCVGQACSMGAFLLAGGAPGKRGALPHARVMIHQPLGGFRGQ---------------- 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +Q+ + ++ P + +D + + Sbjct: 133 --------------ASDIQIHAQEILKIKGTLNERLAFHTGQPIETIEKDTDRDNFMSAE 178 Query: 217 EAKKVGLIDVV 227 EAK GLID V Sbjct: 179 EAKNYGLIDEV 189 >gi|194476907|ref|YP_002049086.1| Clp protease proteolytic subunit [Paulinella chromatophora] gi|171191914|gb|ACB42876.1| Clp protease proteolytic subunit [Paulinella chromatophora] Length = 225 Score = 45.8 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 28/207 (13%), Positives = 66/207 (31%), Gaps = 31/207 (14%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 S ++ + I+ ED+ ++I ++ + ++ + V ++ GGS Y I+ Sbjct: 49 SIPKNTEDRIILISEEMNDEDASDIIAQLLMLEAENPDEDIQVYINCMGGSMYGFVGIYD 108 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 +Q +K + S L A +A + + Sbjct: 109 TMQAIKPDVVTLCYGSAFEMSGFLLSGGAKGKRLALPNARIMLNQ--------------- 153 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVL 207 ++ + E+ L++ ++K Sbjct: 154 ---PETSFYGCITDLQLYNKEL------------MLMRKNICSLIAAHTGQRFEKVTADT 198 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEVW 234 + + ++ AEA + GLID + + E+ Sbjct: 199 NRDQFFSAAEAIEYGLIDRILNKSELI 225 >gi|282896316|ref|ZP_06304338.1| Peptidase S14, ClpP [Raphidiopsis brookii D9] gi|281198812|gb|EFA73691.1| Peptidase S14, ClpP [Raphidiopsis brookii D9] Length = 194 Score = 45.8 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 31/179 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + ++ + + DD + + ++SPGGS AG AI+ IQ +K+ I + Sbjct: 44 ANAIVAYLLYLDSDDQTKPIYLYINSPGGSVTAGMAIYDTIQYIKSEVITICVGLAASMG 103 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 + L + A +A S + ++ I ++ Sbjct: 104 SFLLAAGAKGKRLALPHSRIMIHQPSGGTRGQASDIEIEAREILRIRH------------ 151 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 ++ +++ K D + + EAK+ GLID V Sbjct: 152 ------------------QLNQIYADNTGQVLSKIEKDMDRDFFMSAQEAKEYGLIDRV 192 >gi|42527179|ref|NP_972277.1| ATP-dependent Clp protease proteolytic subunit [Treponema denticola ATCC 35405] gi|67460504|sp|Q73M38|CLPP1_TREDE RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; AltName: Full=Endopeptidase Clp 1 gi|41817603|gb|AAS12188.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema denticola ATCC 35405] Length = 197 Score = 45.8 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 62/195 (31%), Gaps = 33/195 (16%) Query: 40 RIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I + ++ ++ + + + + ++SPGGS AG AI+ +Q ++ Sbjct: 30 IIFVDGEINDMSADLVVAQLLFLEAQNPDKDISLYINSPGGSVTAGLAIYDTMQHIRPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A N A +S V ++ I +K Sbjct: 90 QTICLGQCASMGAVLLAGGAKNKRYALPSSRVMIHQPWGGVQGQAVDINIQAKEIVRLKK 149 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +K +E+ + + + + Sbjct: 150 LTIKYF------------------------------AENTGKTEKQVAADMERDFFMSAE 179 Query: 217 EAKKVGLIDVVGGQE 231 EA G+ID V + Sbjct: 180 EALTYGIIDTVMNRR 194 >gi|326502578|dbj|BAJ95352.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326506866|dbj|BAJ91474.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 300 Score = 45.8 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 57/191 (29%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ + + ++SPGG AG AI+ +Q ++ Sbjct: 98 IVCIHGPIADETASLVVAQLLFLESENPLKPISLYINSPGGVVTAGLAIYDTMQYIRCPV 157 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + V Sbjct: 158 NTICIGQAASMGSLLLAAGARGERRALPNARVMIHQPSGGAQGQ---------------- 201 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + ++ ++ DK + Sbjct: 202 --------------ATDIAIQAKEILKLRDRLNKIYAKHTGQNIDKIEQCMERDLFMDPE 247 Query: 217 EAKKVGLIDVV 227 EA++ GLID V Sbjct: 248 EAREWGLIDEV 258 >gi|220935297|ref|YP_002514196.1| hypothetical protein Tgr7_2129 [Thioalkalivibrio sp. HL-EbGR7] gi|219996607|gb|ACL73209.1| conserved hypothetical protein [Thioalkalivibrio sp. HL-EbGR7] Length = 496 Score = 45.8 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 37/255 (14%), Positives = 85/255 (33%), Gaps = 20/255 (7%) Query: 10 TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSAT 67 R + +L+ + ++++ ED + I G I S ++ +++ D+ A Sbjct: 14 FRLGVWALLLILGAVLAFAATGEDRQRSALLLDIDGAIGPATSDYVVRGLKQAR-DEGAE 72 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV----------HEMAASAGYLISCA 117 +I+ + +PGG A + + I + + AS ++ A Sbjct: 73 LVILRMDTPGGLDTAMREMIKEILASPVPVATYVAPAGSRAASAGTYILYASHIAAMAPA 132 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 +N+ A ++ G G+ + P E + + Sbjct: 133 TNLGSATPVAIGGMPGMPDEQPQRDDRSRDREDKETKETKDKEAEAGDAAEERPAEPRRG 192 Query: 178 MQDVVDSSYHWFVRLVS-----ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQE 231 + V + RN + + + + T +EA + +IDVV E Sbjct: 193 TSPMERKVLEDAVAYIKGLAERHGRNAEWAE-QAVREAVNLTYSEALALNVIDVVAESVE 251 Query: 232 EVWQSLYALGVDQSI 246 ++ + ++ V + Sbjct: 252 DLLKQIHGRTVKMDV 266 >gi|240950423|ref|ZP_04754674.1| putative Clp-like protease [Actinobacillus minor NM305] gi|240295043|gb|EER45899.1| putative Clp-like protease [Actinobacillus minor NM305] Length = 676 Score = 45.8 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 35/269 (13%), Positives = 78/269 (28%), Gaps = 42/269 (15%) Query: 30 HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 ++ A I+I +I +Q+ + ++ + + + + + SPGG + G A Sbjct: 27 TIKAAKNDTAEISIYDEIGFWGVTAQQFAKDLKALGN--NLKQINLHIHSPGGDVFDGIA 84 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+ ++ K + +AAS +I+ A N I+ E +++ Sbjct: 85 IYNLLKNHPANKT--VYIDGLAASMASVIAMAGNEIIMPENAMMMIH------------- 129 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 ++ ++ + + Sbjct: 130 -----KPWGIQGGDADDMRKYADLLDKVE------------STLITAYTAKTGKSETDLA 172 Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 + W TG E + G D + + + ++ + KN F Sbjct: 173 EMLKVETWLTGKECIEQGFADKLADPLVAMACIQSKKLEDYTNMPETI---KNMLFKPQG 229 Query: 265 NLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 N ++ + Q V V P Sbjct: 230 NAGAATPTPEQPKNTTQQAVDNPQNVAKP 258 >gi|167040210|ref|YP_001663195.1| hypothetical protein Teth514_1572 [Thermoanaerobacter sp. X514] gi|300914294|ref|ZP_07131610.1| protein of unknown function DUF107 [Thermoanaerobacter sp. X561] gi|307724470|ref|YP_003904221.1| hypothetical protein Thet_1330 [Thermoanaerobacter sp. X513] gi|166854450|gb|ABY92859.1| protein of unknown function DUF107 [Thermoanaerobacter sp. X514] gi|300889229|gb|EFK84375.1| protein of unknown function DUF107 [Thermoanaerobacter sp. X561] gi|307581531|gb|ADN54930.1| protein of unknown function DUF107 [Thermoanaerobacter sp. X513] Length = 436 Score = 45.8 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 97/288 (33%), Gaps = 34/288 (11%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-QELIERIERISR 62 + ++ T + L L F+ S + V + IRG ++ + ++R ++ Sbjct: 1 MRSRVGTFVIFLITALLFFSLFTNVSGLPKEKGEVLFVPIRGTVDPGMAKFVKRAVEEAK 60 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 + A L+ +++PGG A I + I + + P V+ A SAG LI+ + + Sbjct: 61 ETEAALLVFEINTPGGLVDAAVEISQTI--LNSPVPTAAYVNSQATSAGVLIAISCENLY 118 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A S + + ++V + + Sbjct: 119 MAPGSTI--------------------GAAETVPKEEKTISYWRSKLEGAAERRGRDPRI 158 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALG 241 ++ + + T +A ++ L D + ++E+ L Sbjct: 159 VAAMADADVEI--------EGLKERGKILSLTDKKALELKLADGIAADRKELLTVLG--V 208 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 D+ ++++K + + F ++ L I ++ + G A Sbjct: 209 GDRDVKEVKPFFSERIASFVTSPFVAPMFLTIGFIGIITEVLTPGFGA 256 >gi|332981496|ref|YP_004462937.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mahella australiensis 50-1 BON] gi|332699174|gb|AEE96115.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mahella australiensis 50-1 BON] Length = 194 Score = 45.8 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 68/191 (35%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+++D+ ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IVFLDGEVDDATASLVVAQMLFLESEDPDKDIHLYINSPGGSVTAGFAIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A S + + Sbjct: 89 STICIGMAASMGAFLLAAGAKGKRYALPNSEILIHQPMGGARGQ---------------- 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + + ++SE PY+K +D + + Sbjct: 133 --------------ATDIMIHAEQIVRIKRRLNEILSERTGQPYEKIEKDTDRDFFMSAQ 178 Query: 217 EAKKVGLIDVV 227 EAK+ G++D V Sbjct: 179 EAKEYGIVDEV 189 >gi|309790148|ref|ZP_07684720.1| endopeptidase Clp [Oscillochloris trichoides DG6] gi|308227733|gb|EFO81389.1| endopeptidase Clp [Oscillochloris trichoides DG6] Length = 215 Score = 45.8 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 67/193 (34%), Gaps = 33/193 (17%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 I QI + ++ ++ + DD + + ++SPGGS AG AI+ ++ ++ + Sbjct: 49 PIEDQIANL--IVAQLLFLDSDDPDRDIWLYINSPGGSITAGLAIYDTMRHIRANVATVC 106 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + + L A + S +I + Sbjct: 107 VGMAGSMATPILAGGAKGKRYSLPHS-----------------------TIHMHPAGGGA 143 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220 +P E+ + + L++ ++ D ++ T +AK+ Sbjct: 144 RGYAPDVEIMARE-------LLREQQLIRELLATDTGQTIERIAKDFDRDLFMTPIQAKE 196 Query: 221 VGLIDVVGGQEEV 233 G+ID + +E++ Sbjct: 197 YGIIDEILTREDI 209 >gi|326492708|dbj|BAJ90210.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 285 Score = 45.8 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 57/191 (29%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ + + ++SPGG AG AI+ +Q ++ Sbjct: 83 IVCIHGPIADETASLVVAQLLFLESENPLKPISLYINSPGGVVTAGLAIYDTMQYIRCPV 142 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + V Sbjct: 143 NTICIGQAASMGSLLLAAGARGERRALPNARVMIHQPSGGAQGQ---------------- 186 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + ++ ++ DK + Sbjct: 187 --------------ATDIAIQAKEILKLRDRLNKIYAKHTGQNIDKIEQCMERDLFMDPE 232 Query: 217 EAKKVGLIDVV 227 EA++ GLID V Sbjct: 233 EAREWGLIDEV 243 >gi|315645974|ref|ZP_07899095.1| hypothetical protein PVOR_11004 [Paenibacillus vortex V453] gi|315278735|gb|EFU42049.1| hypothetical protein PVOR_11004 [Paenibacillus vortex V453] Length = 453 Score = 45.8 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 89/226 (39%), Gaps = 21/226 (9%) Query: 14 MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISRDDSATALIVS 72 ++ L+++ + + V N V I ++ QIE +ER + + SA +++ Sbjct: 18 VMILISIGMYFGPTKPAVAANVGSVYVIPVKQQIERGLTSFMERGFKEAEQMSAGLIVLE 77 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 + +PGG I ++ + P++ + AASAG I+ ++ I ++ S++G+ Sbjct: 78 IDTPGGLVDQAGKIATLMK--DSNIPIVAYITGDAASAGSYIALNADKIAMSDGSMIGAA 135 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 ++ + K++ + +E + + + + D + + Sbjct: 136 YMVDSRGNRIEDAKLVSW---------WKSKMAGAAEASGRNKNIAMGMADINLKVDMPE 186 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSL 237 + + ++S T EA K G D + EEV + Sbjct: 187 I----GLTKQPGDIIS----LTPDEALKTGYADTLANSTEEVIAWM 224 >gi|296101559|ref|YP_003611705.1| ATP-dependent Clp protease, protease subunit [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056018|gb|ADF60756.1| ATP-dependent Clp protease, protease subunit [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 207 Score = 45.8 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 62/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 102 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L+++ ++ R + + Sbjct: 156 ------------------------ILKVKARMNELMAQHTGQSLEQIERDTERDRFLSAS 191 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 192 EAVEYGLVDSILT 204 >gi|222150769|ref|YP_002559922.1| ATP-dependent protease proteolytic subunit ClpP [Macrococcus caseolyticus JCSC5402] gi|254763793|sp|B9EAG5|CLPP_MACCJ RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|222119891|dbj|BAH17226.1| ATP-dependent protease proteolytic subunit ClpP [Macrococcus caseolyticus JCSC5402] Length = 194 Score = 45.8 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 65/196 (33%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + ++ ++ + D+ + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGMAIYDTMQHIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + V L ++ Sbjct: 89 QTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAR------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216 + + R+++E P +K +D T Sbjct: 142 -----------------------HILKTREKLNRILAERTGQPIEKIEKDTDRDNFLTAD 178 Query: 217 EAKKVGLIDVVGGQEE 232 EAK GLID V E Sbjct: 179 EAKAYGLIDEVMHPAE 194 >gi|115311786|sp|Q2GD19|CLPP_NEOSM RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp Length = 201 Score = 45.8 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G IED ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 29 VVFLTGPIEDGMASLIVAQLLFLEAENPDKDIFMYINSPGGVVTAGLSIYDTMQYIKPSV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + +A++ L S A A S V ++ Sbjct: 89 STVCVGQAASAASLILASGAEGKRFALPHSRVMVHQPSGGVRGQATDMEIHVKE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + K L + + + Sbjct: 143 ------------------------ILQLKRMINEIYQKHTGETIKKIETLLERDTFLSPE 178 Query: 217 EAKKVGLIDVVGG 229 EAKKVG+ID + Sbjct: 179 EAKKVGIIDDIIT 191 >gi|255280960|ref|ZP_05345515.1| Clp protease [Bryantella formatexigens DSM 14469] gi|255268408|gb|EET61613.1| Clp protease [Bryantella formatexigens DSM 14469] Length = 221 Score = 45.8 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 77/216 (35%), Gaps = 37/216 (17%) Query: 37 HVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 + I I G++E + ++ ++ I +++ L++ GG AG Sbjct: 30 KIHLITIIGEVEGHECLPANTKTTKYEHILPQLAAIEDSREIEGVLILLNTVGGDVEAGL 89 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 AI I + KP ++ V + S G I+ +++ ET + V + Sbjct: 90 AIAEMIASL--SKPTVSLVLGGSHSIGVPIAVSADYSFIVETGTMVIHPVRMSGTVIGAP 147 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 F ++ + + + ++ L+ + + Sbjct: 148 -----------------QTYDYFRQMQDRILGFISGHCSATRDRLEELMLD-TGMLTKDL 189 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 G I G++A + G+I+ VGG + + +++L Sbjct: 190 -----GTILVGSQAVEEGIINQVGGISDAMKKIHSL 220 >gi|288941151|ref|YP_003443391.1| ATP-dependent Clp protease proteolytic subunit ClpP [Allochromatium vinosum DSM 180] gi|288896523|gb|ADC62359.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Allochromatium vinosum DSM 180] Length = 215 Score = 45.8 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 65/194 (33%), Gaps = 31/194 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + ++ ++ + ++ + + ++SPGGS AG AI+ ++ ++ Sbjct: 43 VIFLVGPVEDHMANLVVAQLLFLESENPDKDIHLYINSPGGSVTAGLAIYDTMRFIRPDV 102 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A+ S + L + ++ I + Sbjct: 103 STMCIGQAASMGALLLAGGAAGKRFCLPHSRMMIHQPLGGFQGQATDIEIHAREILYI-- 160 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + ++ + ++E R G Sbjct: 161 -----------------RERLNQILSHHTGQPIEKIAE----------DTDRDRFMDGET 193 Query: 218 AKKVGLIDVVGGQE 231 A++ GLID V + Sbjct: 194 AREYGLIDQVITER 207 >gi|291286449|ref|YP_003503265.1| hypothetical protein Dacet_0511 [Denitrovibrio acetiphilus DSM 12809] gi|290883609|gb|ADD67309.1| protein of unknown function DUF107 [Denitrovibrio acetiphilus DSM 12809] Length = 412 Score = 45.8 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 81/278 (29%), Gaps = 45/278 (16%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVS 72 L + L F+ + + I + G I E + ++ + L++ Sbjct: 4 LLFLILMAAAFTVQAKD------IFVITVDGVITGYTEKYIETSLKEAKANGGV--LLIQ 55 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 L +PGG + I + + + ++ + Sbjct: 56 LDTPGGILDSTRGIVQVLLESDTP-------------------------------VIIFV 84 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 L ++ P + M +++ F+R Sbjct: 85 SPQGARAGSAGTFIVLASHYAAMAEGTNIGAAHPVNVTGKDLEGHMAQKIENDTVAFMRS 144 Query: 193 VSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 ++E R + ++D + +T EA +GL+D V + L + K+ Sbjct: 145 IAEKRGRDVESAVSTVTDSKSYTAKEALSLGLVDQVTNTIDEVSEAAGLKLGFQPGKVVH 204 Query: 252 WN---PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 K +F N+ + L + + + K+ G Sbjct: 205 LTATPLQKVAFFLSDPNVLVLLLFIGILAIFLEFKIPG 242 >gi|220906939|ref|YP_002482250.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. PCC 7425] gi|219863550|gb|ACL43889.1| Endopeptidase Clp [Cyanothece sp. PCC 7425] Length = 198 Score = 45.8 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 63/187 (33%), Gaps = 33/187 (17%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 + +I + +++ + + +D +++ ++SPGGS AG AI+ +Q +K+ I Sbjct: 38 EVDDEIAN--QIVAVMLYLDSEDPGKDIVLYINSPGGSVTAGMAIYDTMQHIKSDVVTIC 95 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + + L + A +A S + ++ I ++ Sbjct: 96 VGLAASMGSFLLTAGAPGKRLALPHSRIMIHQPSGGTRGQASDIEIEAREIIRIRH---- 151 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKK 220 ++ ++ P +K + + EAK Sbjct: 152 --------------------------QLNQIYADRTGQPLEKIEKDIDRDYFMSAQEAKD 185 Query: 221 VGLIDVV 227 GLID V Sbjct: 186 YGLIDRV 192 >gi|187776850|ref|ZP_02993323.1| hypothetical protein CLOSPO_00389 [Clostridium sporogenes ATCC 15579] gi|187775509|gb|EDU39311.1| hypothetical protein CLOSPO_00389 [Clostridium sporogenes ATCC 15579] Length = 194 Score = 45.8 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + ++ D+ ++ ++ + +D + + ++SPGGS +G AI+ +Q +K Sbjct: 29 IIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIYLYINSPGGSITSGMAIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A S V L + +G+ + + Sbjct: 89 STICVGMAASMGAFLLAAGAKGKRYALPNSEVMIHQPLG---GFRGQATDIGIHAERILK 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K S+ P ++ + Sbjct: 146 MKKKLNTIL---------------------------SDRTGKPLEQVELDTERDHFLSAE 178 Query: 217 EAKKVGLIDVVGG 229 EAK+ GLID V Sbjct: 179 EAKEYGLIDEVID 191 >gi|260768947|ref|ZP_05877881.1| ATP-dependent Clp protease proteolytic subunit [Vibrio furnissii CIP 102972] gi|260616977|gb|EEX42162.1| ATP-dependent Clp protease proteolytic subunit [Vibrio furnissii CIP 102972] gi|315180643|gb|ADT87557.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio furnissii NCTC 11218] Length = 208 Score = 45.8 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 63/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + + + + + Sbjct: 102 STLCIGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLG---GFQGQASDIQIHAQEILT 158 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K RL+++ P + + Sbjct: 159 IKNK---------------------------LNRLLADHTGQPLEVIERDTDRDNFMSAQ 191 Query: 217 EAKKVGLIDVVGG 229 +A GL+D + Sbjct: 192 QAVDYGLVDALLT 204 >gi|332532271|ref|ZP_08408152.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332038369|gb|EGI74814.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 205 Score = 45.8 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED+ ++ ++ + ++ + + ++SPGGS AG AI+ + +K Sbjct: 38 IIFLTGQVEDNMANLILAQMLFLESENPDKDIFLYINSPGGSVTAGMAIYDTMNFIKPDV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + + I S+ Sbjct: 98 STICVGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQASDFEIHAKEILSI-- 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 RL++E P D + + Sbjct: 156 ----------------------------KDKLNRLMAEHTGQPLDIISKDTDRDNFMSAS 187 Query: 217 EAKKVGLIDVVGGQEE 232 +A GL+D V + Sbjct: 188 QAVDYGLVDSVFTNRD 203 >gi|116492258|ref|YP_803993.1| ATP-dependent Clp protease proteolytic subunit [Pediococcus pentosaceus ATCC 25745] gi|122266278|sp|Q03GX1|CLPP_PEDPA RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|116102408|gb|ABJ67551.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pediococcus pentosaceus ATCC 25745] Length = 197 Score = 45.8 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 60/192 (31%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D +I ++ + DS + + ++SPGG AG AI+ + +K+ Sbjct: 29 IIMLSGPIDDDLANSIISQLLFLDAQDSEKDIYLYINSPGGVVTAGLAIYDTMNFIKSDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ S A S V + ++ Sbjct: 89 QTIVMGMAASMASVLASSGTKGKRFALPHSEVMIHQPSGGAQGQQTEIEIAAEQ------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + +++E+ P +K + Sbjct: 143 ------------------------ILKTRKELNTILAENSGQPLEKINIDTERDNYLSAQ 178 Query: 217 EAKKVGLIDVVG 228 +A + GLID + Sbjct: 179 DAVEYGLIDGIM 190 >gi|329894939|ref|ZP_08270738.1| ATP-dependent Clp protease proteolytic subunit [gamma proteobacterium IMCC3088] gi|328922668|gb|EGG30003.1| ATP-dependent Clp protease proteolytic subunit [gamma proteobacterium IMCC3088] Length = 200 Score = 45.4 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 60/195 (30%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG AI+ ++ +K Sbjct: 35 VIFVVGQVEDHMANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGLAIYDTMKFIKPDV 94 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L + A + +D I + Sbjct: 95 TTTCMGQAASMGAFLLSAGAKGKRYCLPNARTMIHQPSGGAQGQATDIDIQAKEILII-- 152 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 RL++E P D R Sbjct: 153 ----------------------------RERLNRLMAEHTGQPIDVIERDTERDRFMNAE 184 Query: 217 EAKKVGLIDVVGGQE 231 ++K+ GL+D V Sbjct: 185 QSKEYGLVDEVVSSR 199 >gi|25019682|gb|AAN71768.1| ClpP2 [Synechococcus elongatus PCC 7942] Length = 302 Score = 45.4 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 31/182 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + ++ ++ + +D + + ++SPGGS AG AI+ +Q+V I + Sbjct: 137 ADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMG 196 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L A +A ++ + L ++ Sbjct: 197 AFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIE----------------------- 233 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228 + + L+++ P +K V +D + + EAK GLID V Sbjct: 234 -------IQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 286 Query: 229 GQ 230 + Sbjct: 287 TR 288 >gi|84394240|ref|ZP_00992968.1| hypothetical membrane protein [Vibrio splendidus 12B01] gi|84375154|gb|EAP92073.1| hypothetical membrane protein [Vibrio splendidus 12B01] Length = 468 Score = 45.4 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 74/250 (29%), Gaps = 26/250 (10%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIE 58 M F+LK + ++ S V + V I + G I S L IE Sbjct: 1 MTFILKYLFAFLLLF-------------SSVFAQADDVWVIEVNGGIGPATSDYLTREIE 47 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 + D+ A +I+ +++PGG + I R+I A++ + Sbjct: 48 QA-HDEQAKLIILKMNTPGGLDSSMRDIIRSITTSPIPIATWVGPAGSRAASAGTYILLA 106 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV--KSSPMKAEPSPFSEVNPKAVQ 176 + I + K + L + ++ + E + + Sbjct: 107 SHIASMAPGTNLGAATPVSLGGGKAPANPLSPQDDANKDDNTSTSEQDETKQENSDQVKA 166 Query: 177 MMQDVVDSSYHWFVRLVS----ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 +VS +RN + + + + A + +ID + Sbjct: 167 TTAMEKKVINDAAAYIVSLAKLHNRNEEWAE-KAVREAASLDSENALTLNVIDFIASD-- 223 Query: 233 VWQSLYALGV 242 Q L L Sbjct: 224 -LQQLVELSN 232 >gi|317970581|ref|ZP_07971971.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. CB0205] Length = 200 Score = 45.4 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 32/187 (17%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 + I +S L+ ++ + DD++ + + ++SPGGS AG AI+ IQ VK+ I Sbjct: 38 EVNDAIANS--LVAQMLYLDSDDNSKPIYLYINSPGGSVTAGLAIYDTIQYVKSDVVTIC 95 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + A L + +A S + L + ++ Sbjct: 96 VGLAASMGAFLLGAGTKGKRLALPHSRIMIHQPLGGTSQRQASDIEIEAR---------- 145 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220 + ++ P +K +D + + EA Sbjct: 146 -------------------EILRMKDMLNNSMAGMTGQPVEKIEKDTDRDYFMSAEEAMN 186 Query: 221 VGLIDVV 227 GLID V Sbjct: 187 YGLIDRV 193 >gi|320102927|ref|YP_004178518.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera pallida ATCC 43644] gi|319750209|gb|ADV61969.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera pallida ATCC 43644] Length = 198 Score = 45.4 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 59/192 (30%), Gaps = 34/192 (17%) Query: 40 RIAIRGQIED---SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 RI I G D S ++ ++ ++ +D + + ++SPGGS AG AI+ +Q V Sbjct: 28 RIIILGTAIDESVSNSVVAQLLYLASEDPKADIRLYINSPGGSVTAGLAIYDMMQSVPCD 87 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 + + L + A+ A + L Sbjct: 88 VATYCIGQCASMGSLLLAAGAAGKRHAMPHGRIMIHQPLAGM------------------ 129 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTG 215 E + + + + + +K R + Sbjct: 130 ------------EGTATDIMIHAEEFLRMKKQLNGIYNHHTGQSLEKLEQDTDRDRFMSP 177 Query: 216 AEAKKVGLIDVV 227 EAK+ GLID + Sbjct: 178 REAKEYGLIDHI 189 >gi|222624791|gb|EEE58923.1| hypothetical protein OsJ_10573 [Oryza sativa Japonica Group] Length = 282 Score = 45.4 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I G +ED ++ ++ + D +I+ ++SPGGS AG AIF ++ ++ Sbjct: 107 IIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTMKHIRPDV 166 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + + S + L + L+ + Sbjct: 167 STVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQANEM----- 221 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 ++ P DK + Sbjct: 222 -------------------------LHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAK 256 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 257 EAKEYGLIDGV 267 >gi|220909724|ref|YP_002485035.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece sp. PCC 7425] gi|219866335|gb|ACL46674.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece sp. PCC 7425] Length = 236 Score = 45.4 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 63/183 (34%), Gaps = 31/183 (16%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + ++ ++ + +D + + ++SPGGS AG AI+ IQ V I + Sbjct: 72 ADSIVAQLLFLDSEDPERDIYLYINSPGGSVTAGMAIYDTIQHVHADVCTICFGLAASMG 131 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L A+ +A S + L + + + K + K Sbjct: 132 AFLLAGGAAGKRMALPHSRIMIHQPLG---GAQGQAVDIEIQAKEILYHKRK-------- 180 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228 L++ P+++ ++ + + EAK GL+D V Sbjct: 181 -------------------LNELLAHHTGQPFERIEADTERDFFMSAEEAKNYGLVDQVI 221 Query: 229 GQE 231 ++ Sbjct: 222 TRQ 224 >gi|297600816|ref|NP_001049902.2| Os03g0308100 [Oryza sativa Japonica Group] gi|63003513|dbj|BAD98161.1| ATP-dependent protease [Oryza sativa Japonica Group] gi|108707751|gb|ABF95546.1| ATP-dependent Clp protease proteolytic subunit 1, putative, expressed [Oryza sativa Japonica Group] gi|215740983|dbj|BAG97478.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765780|dbj|BAG87477.1| unnamed protein product [Oryza sativa Japonica Group] gi|255674452|dbj|BAF11816.2| Os03g0308100 [Oryza sativa Japonica Group] Length = 282 Score = 45.4 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I G +ED ++ ++ + D +I+ ++SPGGS AG AIF ++ ++ Sbjct: 107 IIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTMKHIRPDV 166 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + + S + L + L+ + Sbjct: 167 STVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQANEM----- 221 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 ++ P DK + Sbjct: 222 -------------------------LHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAK 256 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 257 EAKEYGLIDGV 267 >gi|163815266|ref|ZP_02206643.1| hypothetical protein COPEUT_01426 [Coprococcus eutactus ATCC 27759] gi|158449461|gb|EDP26456.1| hypothetical protein COPEUT_01426 [Coprococcus eutactus ATCC 27759] Length = 193 Score = 45.4 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 57/178 (32%), Gaps = 31/178 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 +I ++ + +D + + + ++SPGGS AG I+ ++ +K I + A Sbjct: 44 VIAQLLFLESEDPSKDISLYINSPGGSVTAGMGIYDTMRYIKCDVSTICCGMAASMGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L A A S + L ++ Sbjct: 104 LAGGAKGKRYALPNSEIMIHQPLGGTQGQATEIEIAAR---------------------- 141 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGG 229 + + ++++E+ P D +D W T EA GLID V Sbjct: 142 --------HILKTKEKLNKMLAENTGKPLDVIAADTDRDNWMTADEACAYGLIDSVIT 191 >gi|332800332|ref|YP_004461831.1| peptidase S14 ClpP [Tepidanaerobacter sp. Re1] gi|332698067|gb|AEE92524.1| peptidase S14 ClpP [Tepidanaerobacter sp. Re1] Length = 229 Score = 45.4 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 86/260 (33%), Gaps = 45/260 (17%) Query: 30 HVEDNSPHVARIAIRGQIEDS----QELIERIERISRDD--SATALIVSLSSPGGSAYAG 83 + ++ + + G+I + E+ + + D L + ++SPGG +AG Sbjct: 8 NFKNQDEKTGELTLYGEIASATWWGDEITPKEFKADLDGLGDIDTLNIYINSPGGDVFAG 67 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 +AI+ +++ K K + +AAS +++ A + I + +++ Sbjct: 68 QAIYSMLKRHKAHKN--VYIDGLAASIASVVAMAGDTIFMPKNAMMMIHNPWTFGLGNAD 125 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 KL + ++ + E + D+ Sbjct: 126 EFRKLAEDLDKIREG------------------------------LIAAYEERSALTRDE 155 Query: 204 TLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 + + D W T E + G DVVG ++++ K N PK Sbjct: 156 IIKIMDDETWLTADECFEYGFCDVVGKEKQMA------ACIDKTLLTKYRNTPKELLSRL 209 Query: 263 LKNLSISSLLEDTIPLMKQT 282 + LL+ I L + Sbjct: 210 KPDEKKQELLKQKILLELEL 229 >gi|224030041|gb|ACN34096.1| unknown [Zea mays] Length = 259 Score = 45.4 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ A + + ++SPGG AG AI+ +Q +++ Sbjct: 62 IVCIHGPITDDTASLVVAQLLFLESENPAKPVHLYINSPGGVVTAGLAIYDTMQYIRSPV 121 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + ++ L + AS A + V Sbjct: 122 TTLCIGQAASMASLLLAAGASGERRALPNARVMIHQPSGGASGQ---------------- 165 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + ++ ++ D+ + Sbjct: 166 --------------ASDIAIHAKEILKVRDRLNKIYAKHTGQAIDRIEQCMERDMFMDPE 211 Query: 217 EAKKVGLIDVV 227 EA GLID V Sbjct: 212 EAHDWGLIDEV 222 >gi|313159570|gb|EFR58933.1| conserved hypothetical protein [Alistipes sp. HGB5] Length = 101 Score = 45.4 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 11/99 (11%), Positives = 30/99 (30%) Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 ++K G + + + + + + +++ + F V R Sbjct: 1 MEKSGQKVHEIYAEESSDKNLAYRQALTGEYTLIRMRLSHLVAAFHADVKAGRQALRADA 60 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 + G + +A + GL D + +E + Sbjct: 61 PGVLTGATFFADKAIENGLADGIATLQECVDHAFIRASI 99 >gi|116793577|gb|ABK26796.1| unknown [Picea sitchensis] Length = 248 Score = 45.4 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G I D ++ ++ + ++ + + ++SPGG AG AI+ +Q +K+ Sbjct: 63 IICINGPIADETASVVVAQLLFLESENPQKPINMYINSPGGVVTAGLAIYDTMQYIKSPV 122 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + A + V Sbjct: 123 TTLCIGQAASMGSLLLAAGSHGERRALPNARVMIHQPSGGASGQ---------------- 166 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + + L ++ +K + + + Sbjct: 167 --------------ASDIAIHAKEILKTRERLNGLYAKHTGQTIEKIEQFMERDTFMSPD 212 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 213 EAKEFGLIDEV 223 >gi|154506030|ref|ZP_02042768.1| hypothetical protein RUMGNA_03572 [Ruminococcus gnavus ATCC 29149] gi|153793529|gb|EDN75949.1| hypothetical protein RUMGNA_03572 [Ruminococcus gnavus ATCC 29149] Length = 193 Score = 45.4 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 52/181 (28%), Gaps = 31/181 (17%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++ ++ + DD + + ++SPGGS AG AI+ +Q +K + + Sbjct: 39 VSASVIVAQLLFLEADDPNKDIQLYINSPGGSVTAGLAIYDTMQYIKCDVSTVCIGMAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L A A + + + Sbjct: 99 MGAFLLSGGAKGKRFALPNAEIMIHQPSGGAQGQATEISIAAE----------------- 141 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226 + + +++ + P + + EAK GLID Sbjct: 142 -------------HILRTRQKLNEIMAANTGQPLETIKADTERDNFMSAEEAKAYGLIDE 188 Query: 227 V 227 V Sbjct: 189 V 189 >gi|308235224|ref|ZP_07665961.1| ATP-dependent Clp protease proteolytic subunit [Gardnerella vaginalis ATCC 14018] gi|311114525|ref|YP_003985746.1| endopeptidase Clp [Gardnerella vaginalis ATCC 14019] gi|310946019|gb|ADP38723.1| endopeptidase Clp [Gardnerella vaginalis ATCC 14019] Length = 222 Score = 45.4 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 61/181 (33%), Gaps = 30/181 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D +++ ++SPGGS A AI+ +Q +K + + Sbjct: 66 TSADDIMAQLLVLESMDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 125 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + ++ + + V + K +L Sbjct: 126 AAAILLAAGSAGKRMILPNARVLIHQPAMGQDFGKATEIELQAK---------------- 169 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226 + W +++ ++ + I T +AK+ G++D Sbjct: 170 -------------EMLRLREWLESTLAKHTGQDIERIRKDIEVDTILTAPQAKEYGMVDE 216 Query: 227 V 227 V Sbjct: 217 V 217 >gi|325578442|ref|ZP_08148577.1| SppA protein [Haemophilus parainfluenzae ATCC 33392] gi|325160178|gb|EGC72307.1| SppA protein [Haemophilus parainfluenzae ATCC 33392] Length = 223 Score = 45.4 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 10/128 (7%) Query: 29 SHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYA 82 S E P V + +G I S +E+ I DD +++ L SPGG + Sbjct: 95 SEKETPKPCVYVLDFKGDISASETTALREEISAIINVAKADDE---VLLRLESPGGVVHG 151 Query: 83 GEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + ++K + +T V ++AAS GY+++C ++ IV+A +++GSIGV+ Q P + Sbjct: 152 YGLAASQLARLKQKGIKLTVAVDKVAASGGYMMACVADRIVSAPFAIIGSIGVVAQIPNI 211 Query: 142 KPFLDKLG 149 L + Sbjct: 212 HRLLKNMM 219 >gi|310829091|ref|YP_003961448.1| hypothetical protein ELI_3526 [Eubacterium limosum KIST612] gi|308740825|gb|ADO38485.1| hypothetical protein ELI_3526 [Eubacterium limosum KIST612] Length = 195 Score = 45.4 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 60/195 (30%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D+ ++ ++ + D+ + + ++SPGGS +G AI+ + +K Sbjct: 31 IIFLDGEINDTTSSLIVAQLIFLEADNPDKDIEMYINSPGGSITSGFAIYDTMNFIKCDV 90 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A A S + L ++ Sbjct: 91 STMCVGMAASMGAFLLAAGAKGKRKALPNSEIMIHQPLGGAQGQSVDVEIYAKR------ 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + ++SE P D + Sbjct: 145 ------------------------LIKTREKLNEILSEKTGQPIDVIARDTDRDNFMSAE 180 Query: 217 EAKKVGLIDVVGGQE 231 EA + GLID + Sbjct: 181 EALEYGLIDQIVSSR 195 >gi|71281884|ref|YP_270452.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Colwellia psychrerythraea 34H] gi|110816457|sp|Q47XL8|CLPP_COLP3 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|71147624|gb|AAZ28097.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Colwellia psychrerythraea 34H] Length = 220 Score = 45.4 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + +I ++ + + + + ++SPGGS AG AI+ ++ +K Sbjct: 53 VIFLCGQVEDHMANLIIAQLLFLESESPDKDIYLYINSPGGSVTAGMAIYDTMKFIKPNI 112 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + V L + + I +K Sbjct: 113 STVCIGQAASMGAFLLSGGEKGKRYCLPNARVMIHQPLGGFQGQASDFEIHAKEILFIKD 172 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 K L++E DK + Sbjct: 173 KLNK------------------------------LMAEHTGQTLDKVSQDTDRDNFLSAE 202 Query: 217 EAKKVGLIDVV 227 A + GL+D + Sbjct: 203 AAVEYGLVDSI 213 >gi|71907348|ref|YP_284935.1| ATP-dependent Clp protease proteolytic subunit ClpP [Dechloromonas aromatica RCB] gi|110816458|sp|Q47FB6|CLPP_DECAR RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|71846969|gb|AAZ46465.1| ATP-dependent Clp protease proteolytic subunit ClpP [Dechloromonas aromatica RCB] Length = 209 Score = 45.4 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 66/197 (33%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLVGPVNDVTANLVVAQLLFLEAENPDKDIYFYINSPGGSVTAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A A S V L + + I S+ Sbjct: 102 STLCIGQAASMGAFLLNAGAKGKRFALPNSRVMIHQPLGGFQGQASDIAIHAKEILSI-- 159 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216 R+++E P ++ +D + A Sbjct: 160 ----------------------------RDRLNRIMAEHSGQPLERIEKDTDRDNFLSAA 191 Query: 217 EAKKVGLIDVVGGQEEV 233 EA + GLID V + + Sbjct: 192 EAAEYGLIDKVLTRRDA 208 >gi|56963977|ref|YP_175708.1| translocation-enhancing protein TepA [Bacillus clausii KSM-K16] gi|56910220|dbj|BAD64747.1| translocation-enhancing protein TepA [Bacillus clausii KSM-K16] Length = 243 Score = 45.4 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 65/197 (32%), Gaps = 25/197 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +I ++ + ++ L++ L++ GG AG A+ I + + Sbjct: 67 EHMIPQLVAVEQNPKIEGLLIILNTVGGDVEAGLALSEMIASI--------------SKP 112 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + + S + + + +L + V ++ Sbjct: 113 TVTLVLGGGHSIGVPIATAASYSFIAETATMTIHPVRLTGLVIGVPQ-----TFEYLDKM 167 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + ++ + S F L+ N+ D G G +A + GLI+ VGG Sbjct: 168 QDRVIRFVTSHSQISEEKFKELMFSKGNLTRDI------GTNVIGTDAVEYGLINEVGGI 221 Query: 231 EEVWQSLYALGVDQSIR 247 + + L + +Q Sbjct: 222 GQAIRKLNEMIEEQKAD 238 >gi|300856723|ref|YP_003781707.1| ATP-dependent Clp protease proteolytic subunit [Clostridium ljungdahlii DSM 13528] gi|300436838|gb|ADK16605.1| ATP-dependent Clp protease proteolytic subunit [Clostridium ljungdahlii DSM 13528] Length = 194 Score = 45.4 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 31/178 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGGS +G AI+ +Q +K+ I + A Sbjct: 44 VVAQLLFLEAEDPDKDIYLYINSPGGSITSGMAIYDTMQYIKSDVSTICIGMGASMGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A A + + L + Sbjct: 104 LTAGAKGKRFALPNAEIMIHQPLGGFQGQ------------------------------A 133 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGG 229 + + + ++SE P +K T EAK+ GLID V Sbjct: 134 TDIGIHAKRILDIKKKLNTIISERTGQPLEKVEKDTERDNFMTAEEAKEYGLIDEVIT 191 >gi|253990891|ref|YP_003042247.1| ATP-dependent Clp protease proteolytic subunit [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782341|emb|CAQ85505.1| ATP-dependent proteolytic subunit of clpA-ClpP serine protease, heat shock protein F21.5 [Photorhabdus asymbiotica] Length = 207 Score = 45.4 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 63/196 (32%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + ++ Sbjct: 102 STICMGQACSMGAFLLTAGAEGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAQE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + L+++ ++ R + + Sbjct: 156 ------------------------ILKVKGRMNSLMAKHTGKSLEEIEKDTERDRFLSAS 191 Query: 217 EAKKVGLIDVVGGQEE 232 EA + GL+D + + Sbjct: 192 EAVEYGLVDKIFTHRD 207 >gi|308177634|ref|YP_003917040.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter arilaitensis Re117] gi|307745097|emb|CBT76069.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter arilaitensis Re117] Length = 219 Score = 45.4 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 52/183 (28%), Gaps = 29/183 (15%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D + + ++SPGGS A AI+ IQ ++ + + Sbjct: 54 ASADDVMAQLLVLESMDPERDVTLYINSPGGSFTAMTAIYDTIQFIRPEVQTVCLGQAAS 113 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + +A + V Sbjct: 114 AAAVLLAAGTPGKRLALPNARVLIHQPAM-------------------GGGERGTATDLQ 154 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226 + ++ +K + T +EAK G++D Sbjct: 155 IQAEEVMRMRSWLEET---------IASHSGQDVEKVRDDVERDLFMTASEAKVYGIVDE 205 Query: 227 VGG 229 V Sbjct: 206 VLT 208 >gi|268611241|ref|ZP_06144968.1| ATP-dependent Clp protease, protease subunit [Ruminococcus flavefaciens FD-1] Length = 196 Score = 45.4 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 57/176 (32%), Gaps = 29/176 (16%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + D + + ++SPGGS AG AI+ + +K I + A Sbjct: 45 VVAQLLYLESQDPEKDISLYINSPGGSVTAGFAIYDTMNYIKCDVSTICIGMAASMGAFL 104 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L S A +A S + L D Sbjct: 105 LSSGAKGKRIALPNSEIMIHQPLIGGGLGGQQTDI------------------------- 139 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 + ++ + + +++E+ ++ + + T EA GLID V Sbjct: 140 ---MIHAKNMERTRNRLESILAENTGKSVEEIHAACERDNYMTAQEAMDYGLIDKV 192 >gi|257452229|ref|ZP_05617528.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp. 3_1_5R] gi|257465976|ref|ZP_05630287.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium gonidiaformans ATCC 25563] gi|315917132|ref|ZP_07913372.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium gonidiaformans ATCC 25563] gi|317058772|ref|ZP_07923257.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp. 3_1_5R] gi|313684448|gb|EFS21283.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp. 3_1_5R] gi|313691007|gb|EFS27842.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium gonidiaformans ATCC 25563] Length = 195 Score = 45.4 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 60/180 (33%), Gaps = 28/180 (15%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + L+ ++ + +D +I+ ++SPGGS AG AI+ + VK + + Sbjct: 40 AASLVAQLLYLEAEDPTKDIILYINSPGGSVSAGLAIYDTMNYVKPDIQTVCIGQAASMG 99 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L + A E S + L + + K ++++ K Sbjct: 100 AFLLSAGTKGKRFALENSRIMIHQPLGGTGSGYHQATDVQIIAKELQATKEK-------- 151 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVG 228 +++++ ++ T EA GLID+V Sbjct: 152 -------------------LASIIAKNSGKTTEEVLEDTERDNYLTAEEAVNYGLIDMVM 192 >gi|121534809|ref|ZP_01666629.1| protein of unknown function DUF107 [Thermosinus carboxydivorans Nor1] gi|121306604|gb|EAX47526.1| protein of unknown function DUF107 [Thermosinus carboxydivorans Nor1] Length = 436 Score = 45.4 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 6/121 (4%) Query: 11 RYVMLSLVTLTVVYFSWSSH---VEDNSPHVARIAIRGQIEDSQ-ELIERIERISRDDSA 66 RY L++V L ++ FS+ D+ V I I+G+I SQ L+ R+ + A Sbjct: 2 RYKPLAVVFLLILVFSFVEPTVLAADDRQPVLLIPIKGEINGSQAALVRRVLTEASAQKA 61 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 A+++ + + GG AI I + P I V A SAG LI+ A IV A Sbjct: 62 QAVLIEIDTFGGLVDPAVAIRDII--IDYPLPTICYVKNRAWSAGALIALAHKHIVIAPG 119 Query: 127 S 127 Sbjct: 120 G 120 >gi|304437034|ref|ZP_07396997.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369985|gb|EFM23647.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 203 Score = 45.4 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+DS ++ ++ + +D + + ++SPGG AG AI+ +Q +K Sbjct: 30 IIFLGGPIDDSVANVIVAQMLFLESEDPDKDIHLYINSPGGVVTAGLAIYDTMQYIKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + + L Sbjct: 90 STICVGQAASMGSILLTAGAKGKRYALPHARIMIHQPLGGAQGQST-------------- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 +Q+ + +++ +K + Sbjct: 136 ----------------DIQIQAKEILRLREVGNEILAHHTGQDTEKINVDTERDNFMSAE 179 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 180 EAKEYGLIDEV 190 >gi|221641142|ref|YP_002527404.1| periplasmic serine protease [Rhodobacter sphaeroides KD131] gi|221161923|gb|ACM02903.1| Periplasmic serine protease [Rhodobacter sphaeroides KD131] Length = 305 Score = 45.4 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 81/228 (35%), Gaps = 24/228 (10%) Query: 39 ARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 A + +RG + + L E + ++ + A A+++ + SPGG EA Sbjct: 61 AVVPVRGILTPNMAQYERWFGWATYHGLAETLAHLAASEDAAAIVLEIDSPGGLVCGIEA 120 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 AI KPV V +AASA Y ++ + IV ++ GSIGV + Sbjct: 121 AAEAIAAAATLKPVHALVSPLAASAAYWLASQATEIVMTPGAVAGSIGV---ALTAAAHV 177 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204 + + S A +Q +D + F VS R IP + Sbjct: 178 QPGTNGAQIFEMSSRHARAKRPDASTEAGRAELQRSLDEAEAAFHAAVSAGRAIPAAELA 237 Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 G + EA + GL D + + L A V +S Sbjct: 238 ARLSVTDDPQDGGATFRAPEAIRRGLADRTETRAAFYARLTARTVPKS 285 >gi|298491692|ref|YP_003721869.1| ATP-dependent Clp protease proteolytic subunit ClpP ['Nostoc azollae' 0708] gi|298233610|gb|ADI64746.1| ATP-dependent Clp protease, proteolytic subunit ClpP ['Nostoc azollae' 0708] Length = 232 Score = 45.4 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + ++ ++ + +DS + + ++SPGGS YAG AI+ IQ+++ Sbjct: 55 IIFLGTPIDDNVANSIVAQLLFLDAEDSGKDIQLYINSPGGSVYAGMAIYDTIQQIRPDV 114 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + + ++ S + L ++ I + Sbjct: 115 VTICFGLAASMGAFLLTAGTAGKRMSLPDSRIMIHQPLGGAQGQAIDIEIQAREILYI-- 172 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +L+++ P D+ ++ + + Sbjct: 173 ----------------------------KGNLNQLMAKHTGQPLDRIEADTERDFFMSAE 204 Query: 217 EAKKVGLIDVV 227 EAK GLID V Sbjct: 205 EAKNYGLIDQV 215 >gi|293375439|ref|ZP_06621720.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Turicibacter sanguinis PC909] gi|325844477|ref|ZP_08168204.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Turicibacter sp. HGF1] gi|292645992|gb|EFF64021.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Turicibacter sanguinis PC909] gi|325489151|gb|EGC91535.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Turicibacter sp. HGF1] Length = 199 Score = 45.4 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 59/194 (30%), Gaps = 33/194 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D ++ ++ ++ +D + + ++SPGGS AG AIF + +K Sbjct: 30 IIMLSGEINDHTANIVVAQLLFLAAEDPDKDINIYINSPGGSVTAGLAIFDTMNYIKCDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + S V L + Sbjct: 90 STICVGMAASMGAFLLTAGTKGKRYVLPNSEVMIHQPLGGAQGQATEIAIAAK------- 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + ++++E P +K + Sbjct: 143 -----------------------HILKTRDRLNKILAEQTGQPLEKIEQDTERDNFMSAD 179 Query: 217 EAKKVGLIDVVGGQ 230 EA GL+D V + Sbjct: 180 EAVAYGLVDQVVTR 193 >gi|229096954|ref|ZP_04227923.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus Rock3-29] gi|228686564|gb|EEL40473.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus Rock3-29] Length = 239 Score = 45.4 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 69/213 (32%), Gaps = 38/213 (17%) Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 D + + ++SPGGS + AI +Q+ + VI+ + + AS ++ S+ I+ Sbjct: 43 DGIETINLYINSPGGSVFETMAIIAMLQRHPAK--VISYIDGIGASCASVLPMISDKIIM 100 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 S++ V + Y D+L + ++ Sbjct: 101 YANSML---MVHNAWTYASGNADQLRKAADDIE-------------------------RI 132 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + L + D L D W + EA + GL D + L Sbjct: 133 NQSMVQHYLTRAGDKLDEDILKQLLDAETWLSADEAMEYGLCDEIISANNAAACL----- 187 Query: 243 DQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 + +K++ N+S +LE Sbjct: 188 --DEKWMKEYKNVPQQLVNTQANISSDEMLERQ 218 >gi|254818307|ref|ZP_05223308.1| putative acyl-CoA dehydrogenase [Mycobacterium intracellulare ATCC 13950] Length = 714 Score = 45.4 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 83/242 (34%), Gaps = 18/242 (7%) Query: 63 DDSATALI-VSLSSPGGSA-----YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116 D A ++ ++L P GSA + E++ A++++ K IT V +A + Sbjct: 9 DKDADGIVTLTLDDPTGSANVMNEHYSESMHNAVERLAAEKDSITGVVITSAKKTFFAGG 68 Query: 117 ASNIIV-AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-------PMKAEPSPFS 168 ++ + + + L+ LG + + + + Sbjct: 69 DLKGMINLGPENAGEAFDTVESVKRDLRALETLGKPVVAAINGAALGGGLEIALACHHRI 128 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSE---SRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 + K + V V+ I VLS G + A+AK++GL+D Sbjct: 129 AADVKGSVLGLPEVTLGLLPGGGGVTRTVRMFGIQKAFMEVLSQGTRFKPAKAKEIGLVD 188 Query: 226 VV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + G +E+ + A + W+ + + + + P + + ++ Sbjct: 189 ELVGSVDELVPAAKAWIKANPDSHEQPWDKKGYKMPGGTPSSPALAGILPSFPALLKKQL 248 Query: 285 QG 286 +G Sbjct: 249 KG 250 >gi|88608072|ref|YP_506627.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neorickettsia sennetsu str. Miyayama] gi|88600241|gb|ABD45709.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neorickettsia sennetsu str. Miyayama] Length = 211 Score = 45.4 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G IED ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 39 VVFLTGPIEDGMASLIVAQLLFLEAENPDKDIFMYINSPGGVVTAGLSIYDTMQYIKPSV 98 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + +A++ L S A A S V ++ Sbjct: 99 STVCVGQAASAASLILASGAEGKRFALPHSRVMVHQPSGGVRGQATDMEIHVKE------ 152 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + K L + + + Sbjct: 153 ------------------------ILQLKRMINEIYQKHTGETIKKIETLLERDTFLSPE 188 Query: 217 EAKKVGLIDVVGG 229 EAKKVG+ID + Sbjct: 189 EAKKVGIIDDIIT 201 >gi|332799059|ref|YP_004460558.1| hypothetical protein TepRe1_1105 [Tepidanaerobacter sp. Re1] gi|332696794|gb|AEE91251.1| protein of unknown function DUF107 [Tepidanaerobacter sp. Re1] Length = 445 Score = 45.4 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 76/237 (32%), Gaps = 36/237 (15%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVED--NSPHVARIAIRGQIED--SQELIERIERIS 61 KKI ++ L+ + + V+ S +V + +RG I++ + +I I Sbjct: 4 KKILITIFLICLIFAPMEQSLAGNTVKALEASEYVYIVPVRGVIDNGLATFIIRGIREAE 63 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 A ALI + +PGG + I AI K + + A II Sbjct: 64 EM-QAKALIFEIDTPGGEVGSAIKISNAILKTS---------IPTVSFINNEATSAGVII 113 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 + +++ G +P +K + S Sbjct: 114 AISSETIMAVPGATIGAAETRPNEEKYISY----------WSSALRSVAEKTGRDPQLVA 163 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG-QEEVWQSL 237 + + V E L L+ G EA K+GL+D ++V Q + Sbjct: 164 AMADADVVIEGVKEKGK-----ILSLTTG------EAIKLGLVDEQADSLDQVIQRI 209 >gi|237753395|ref|ZP_04583875.1| ATP-dependent clp protease proteolytic subunit [Helicobacter winghamensis ATCC BAA-430] gi|229375662|gb|EEO25753.1| ATP-dependent clp protease proteolytic subunit [Helicobacter winghamensis ATCC BAA-430] Length = 196 Score = 45.4 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQI+D + ++ ++ + +D + + ++SPGG +G +I+ + VK Sbjct: 30 IILLSGQIDDGLASSIVAQLLFLEAEDPEKDIYLYINSPGGVVTSGLSIYDTMNYVKPDI 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + S + L ++ Sbjct: 90 STICIGQAASMGAFLLSCGTKGKRYSLPNSRIMIHQPLGGAQGQATEIE----------- 138 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +++ + N P +K +D + + Sbjct: 139 -------------------IQAKEILRLKSSLNEILASNTNQPLEKIAKDTDRDFYLSAK 179 Query: 217 EAKKVGLIDVV 227 EA++ GLID V Sbjct: 180 EAQEYGLIDSV 190 >gi|28897691|ref|NP_797296.1| ATP-dependent Clp protease proteolytic subunit [Vibrio parahaemolyticus RIMD 2210633] gi|260898290|ref|ZP_05906786.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio parahaemolyticus Peru-466] gi|308094762|ref|ZP_05891792.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio parahaemolyticus AN-5034] gi|31340006|sp|Q87R80|CLPP_VIBPA RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|28805904|dbj|BAC59180.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio parahaemolyticus RIMD 2210633] gi|308088425|gb|EFO38120.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio parahaemolyticus Peru-466] gi|308093191|gb|EFO42886.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio parahaemolyticus AN-5034] Length = 200 Score = 45.4 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 62/197 (31%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 34 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 93 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A+ S V L + + I ++ Sbjct: 94 STVCMGQACSMGAFLLAGGAAGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTI-- 151 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L++E P + + Sbjct: 152 ----------------------------KQKLNNLLAEHTGQPLEVIERDTDRDNFMSAE 183 Query: 217 EAKKVGLIDVVGGQEEV 233 +A + G++D V Sbjct: 184 QAVEYGIVDAVLSHRGA 200 >gi|91793847|ref|YP_563498.1| ATP-dependent Clp protease proteolytic subunit [Shewanella denitrificans OS217] gi|123356647|sp|Q12LA1|CLPP_SHEDO RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|91715849|gb|ABE55775.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella denitrificans OS217] Length = 203 Score = 45.4 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 50/180 (27%), Gaps = 31/180 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + + + + ++SPGGS AG AI+ +Q +K + + A Sbjct: 53 IVAQLLFLESESPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFL 112 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L A S V L + + + + + K Sbjct: 113 LAGGAKGKRHCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILGIKNKLNQML------ 163 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231 +E P + + +A GL+D + Sbjct: 164 ---------------------AEHTGQPLEVIERDTDRDNFMSATQAMDYGLVDSLLTSR 202 >gi|153839648|ref|ZP_01992315.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio parahaemolyticus AQ3810] gi|260902813|ref|ZP_05911208.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio parahaemolyticus AQ4037] gi|149746838|gb|EDM57826.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio parahaemolyticus AQ3810] gi|308108649|gb|EFO46189.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio parahaemolyticus AQ4037] gi|328473326|gb|EGF44174.1| ATP-dependent Clp protease proteolytic subunit [Vibrio parahaemolyticus 10329] Length = 208 Score = 45.4 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 62/197 (31%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A+ S V L + + I ++ Sbjct: 102 STVCMGQACSMGAFLLAGGAAGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTI-- 159 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L++E P + + Sbjct: 160 ----------------------------KQKLNNLLAEHTGQPLEVIERDTDRDNFMSAE 191 Query: 217 EAKKVGLIDVVGGQEEV 233 +A + G++D V Sbjct: 192 QAVEYGIVDAVLSHRGA 208 >gi|311069140|ref|YP_003974063.1| putative membrane bound hydrolase [Bacillus atrophaeus 1942] gi|310869657|gb|ADP33132.1| putative membrane bound hydrolase [Bacillus atrophaeus 1942] Length = 438 Score = 45.4 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 3/90 (3%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISRDD 64 KKI ++SL L ++ ++ + +V I + +E + R + + D+ Sbjct: 4 KKIGIMVALISLFVLFLIGV--QPTIKSSKQNVWVIPVEKTVEKGLATFLARAFQEAEDN 61 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 A +I+++++PGG+ + I I Sbjct: 62 HAKHIILNINTPGGAVESALEIADTINHAD 91 >gi|323495056|ref|ZP_08100145.1| ATP-dependent Clp protease proteolytic subunit [Vibrio brasiliensis LMG 20546] gi|323310713|gb|EGA63888.1| ATP-dependent Clp protease proteolytic subunit [Vibrio brasiliensis LMG 20546] Length = 208 Score = 45.4 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 IIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + I ++K Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRHVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQ 161 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K L++E P + + Sbjct: 162 KLNK------------------------------LLAEHTGQPLEVIERDTDRDNFMSAD 191 Query: 217 EAKKVGLIDVV 227 +A + GL+D V Sbjct: 192 QAVEYGLVDSV 202 >gi|332141945|ref|YP_004427683.1| ATP-dependent Clp protease proteolytic subunit [Alteromonas macleodii str. 'Deep ecotype'] gi|327551967|gb|AEA98685.1| ATP-dependent Clp protease proteolytic subunit [Alteromonas macleodii str. 'Deep ecotype'] Length = 209 Score = 45.4 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 68/200 (34%), Gaps = 34/200 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG AI+ ++ +K Sbjct: 38 VIFLVGQVEDHMANLIVAQMLFLEAENPEKDIFLYINSPGGSVTAGMAIYDTMRFIKPDV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A S V L + + I S+ Sbjct: 98 STVCMGQAASMGAFLLSAGAKGKRYCLPNSRVMIHQPLGGFQGQASDFEIHAKEILSI-- 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 RL+++ Y+K + Sbjct: 156 ----------------------------KEKLNRLLADHTGQDYEKVARDTDRDNFLSAT 187 Query: 217 EAKKVGLIDV-VGGQEEVWQ 235 EAK+ GL+D + + +V Sbjct: 188 EAKEYGLVDQVLANRSDVAA 207 >gi|295698387|ref|YP_003603042.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus Riesia pediculicola USDA] gi|291157158|gb|ADD79603.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus Riesia pediculicola USDA] Length = 196 Score = 45.4 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IED+ +I ++ + ++ + + ++SPGG +G +I+ IQ + + Sbjct: 29 IIFLTGYIEDNMANLIISQLLFLESENQTKEIYLYINSPGGIITSGISIYDTIQFIMPKV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S A S + + + ++ Sbjct: 89 STICIGQACSMGAFLLASGAKGKRYCLPNSRIMIHQPMGSFRGQATDIEIHTKE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + L+++ ++ ++ + + Sbjct: 143 ------------------------IIKLKSKMNELMAKHTGKQVEQIEKDTERDYFLSSE 178 Query: 217 EAKKVGLIDVV 227 EA GL+D V Sbjct: 179 EAVDYGLVDRV 189 >gi|269798318|ref|YP_003312218.1| ATP-dependent Clp protease proteolytic subunit ClpP [Veillonella parvula DSM 2008] gi|269094947|gb|ACZ24938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella parvula DSM 2008] Length = 197 Score = 45.4 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 59/197 (29%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D + +I ++ + +D + + ++SPGG AG AI+ +Q +K Sbjct: 28 IIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMQYIKPDV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A + + L ++ Sbjct: 88 STICVGSAASMGAVLLTAGTKGKRYALPHARIMIHQPLGGVQGQASEIEIHARE------ 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + +++ + + Sbjct: 142 ------------------------ILRMREELNGILASRSGQDIEVVARDTDRDNFMSAQ 177 Query: 217 EAKKVGLIDVVGGQEEV 233 +A + GLID V +E V Sbjct: 178 DAVEYGLIDEVLTRESV 194 >gi|121605153|ref|YP_982482.1| peptidase S14, ClpP [Polaromonas naphthalenivorans CJ2] gi|120594122|gb|ABM37561.1| ATP-dependent Clp protease proteolytic subunit ClpP [Polaromonas naphthalenivorans CJ2] Length = 674 Score = 45.0 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 64/193 (33%), Gaps = 38/193 (19%) Query: 41 IAIRGQIEDS--QELIER--IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 I I G I +S +E + + D ATA+ V ++S GGS G AI+ A+++ K Sbjct: 30 IYIYGDIGESWYEETVSAATFVKELNDIDATAITVRINSIGGSVPDGLAIYNALRRHKAE 89 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 + MA S LI+ A + + A +++ G L + + + Sbjct: 90 VTIEI--DGMALSVASLIAMAGDKVNMANNAMLMIHGPWSYVSGNSVELRDMADQLDT-- 145 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR--IWT 214 + +L+DG+ +T Sbjct: 146 ----------------------------WAAAMSNSYAARTGDQPAMLALLTDGKDHFYT 177 Query: 215 GAEAKKVGLIDVV 227 +A +D + Sbjct: 178 AEQALAEKFVDAI 190 >gi|94312344|ref|YP_585554.1| enoyl-CoA hydratase/isomerase [Cupriavidus metallidurans CH34] gi|93356196|gb|ABF10285.1| Enoyl-CoA hydratase [Cupriavidus metallidurans CH34] Length = 256 Score = 45.0 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 63/212 (29%), Gaps = 34/212 (16%) Query: 36 PHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 ++A I + ++ L++ + R + DDS A+I++ + P + + Sbjct: 10 DNIAEILLDSPPVNALNEAMIDALLQGLRRAAEDDSVRAVILASAVPR--RFCAGLQLDS 67 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 ++ + + I A + G L + + D Sbjct: 68 LRDAPPSRGYALVEKLYSGLCEAQFHLGKPSIAAVGGTARGGGMTLAIHCDMIVAADTAT 127 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + + A R++ R L Sbjct: 128 FGYPEIDVGLVPAIHYTHLP---------------------RIIGRHRAFDL-----LFT 161 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 GR + AEA +GL++ V ++ V + AL Sbjct: 162 GRSFDAAEAMSLGLVNRVVPEQRVMEEARALA 193 >gi|315641411|ref|ZP_07896485.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus italicus DSM 15952] gi|315482847|gb|EFU73369.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus italicus DSM 15952] Length = 194 Score = 45.0 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ D +I ++ + DS + + ++SPGGS AG AI+ + VK Sbjct: 29 IIMLSGQVTDDLANSIISQLLFLDAQDSEKDIYLYINSPGGSVTAGLAIYDTMNFVKADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A + + L ++ Sbjct: 89 QTIVMGMAASMGSFLLTAGKKGKRFALPNAEIMIHQPLGGAQGQATEIEIAAR------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +++E P + +D + T Sbjct: 142 -----------------------HILKTRERLNNILAERTGQPLEVIEKDTDRDNFMTAQ 178 Query: 217 EAKKVGLIDVV 227 EAK GLID + Sbjct: 179 EAKDYGLIDQI 189 >gi|221065471|ref|ZP_03541576.1| Endopeptidase Clp [Comamonas testosteroni KF-1] gi|220710494|gb|EED65862.1| Endopeptidase Clp [Comamonas testosteroni KF-1] Length = 201 Score = 45.0 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 63/197 (31%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D+ + ++ + ++ + + ++SPGG +G A++ +Q +K+ Sbjct: 33 VIFLNGEVNDAVSALVCAQLLFLEAENPDKPIHLYINSPGGVITSGLAMYDTMQFIKSPV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + S+ + + + P + L + + Sbjct: 93 HTLC--------------------MGTARSMGSFLLMAGE-PGHRMALPNASLHVHQPLG 131 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + RL ++ Y + L R T Sbjct: 132 GVQGQASDIRIHAEEMLR---------TKDRVTRLYAQHCGRSYQEVERDLDRDRFMTAK 182 Query: 217 EAKKVGLIDVVGGQEEV 233 EA++ GLID V + Sbjct: 183 EAREWGLIDKVLDRRTA 199 >gi|331701681|ref|YP_004398640.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus buchneri NRRL B-30929] gi|329129024|gb|AEB73577.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus buchneri NRRL B-30929] Length = 197 Score = 45.0 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 60/195 (30%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IED +I ++ + DS + + ++SPGG +G AI+ + VK+ Sbjct: 29 IIMLSGPIEDDMANAIIAQLLFLDAQDSEKDIYLYINSPGGVITSGMAIYDTMNFVKSDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ S A A + V + ++ Sbjct: 89 QTIVMGMAASMASVLASSGAKGKRFALPHAQVLIHQPSGGAQGQQTEIEIAAEE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + L++E+ P +K T Sbjct: 143 ------------------------ILKARKMINNLLAENSGQPIEKINKDTERDNYLTAQ 178 Query: 217 EAKKVGLIDVVGGQE 231 EA GL+D + Sbjct: 179 EAVDYGLLDGIMTSS 193 >gi|301598440|pdb|3HLN|A Chain A, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598441|pdb|3HLN|B Chain B, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598442|pdb|3HLN|C Chain C, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598443|pdb|3HLN|D Chain D, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598444|pdb|3HLN|E Chain E, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598445|pdb|3HLN|F Chain F, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598446|pdb|3HLN|G Chain G, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598447|pdb|3HLN|H Chain H, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598448|pdb|3HLN|I Chain I, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598449|pdb|3HLN|J Chain J, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598450|pdb|3HLN|K Chain K, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598451|pdb|3HLN|L Chain L, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598452|pdb|3HLN|M Chain M, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598453|pdb|3HLN|N Chain N, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598454|pdb|3HLN|O Chain O, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598455|pdb|3HLN|P Chain P, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598456|pdb|3HLN|Q Chain Q, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598457|pdb|3HLN|R Chain R, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598458|pdb|3HLN|S Chain S, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598459|pdb|3HLN|T Chain T, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598460|pdb|3HLN|U Chain U, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598461|pdb|3HLN|V Chain V, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598462|pdb|3HLN|W Chain W, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598463|pdb|3HLN|X Chain X, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598464|pdb|3HLN|Y Chain Y, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598465|pdb|3HLN|Z Chain Z, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598466|pdb|3HLN|1 Chain 1, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds gi|301598467|pdb|3HLN|2 Chain 2, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds Length = 193 Score = 45.0 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 28 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 88 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIE----------- 136 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + L++ ++ R + Sbjct: 137 -------------------IHCREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAP 177 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 178 EAVEYGLVDSILT 190 >gi|237730414|ref|ZP_04560895.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226905953|gb|EEH91871.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 243 Score = 45.0 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 78 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 137 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 138 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 191 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + + Sbjct: 192 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAS 227 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 228 EAVEYGLVDSILT 240 >gi|270290690|ref|ZP_06196914.1| Clp protease [Pediococcus acidilactici 7_4] gi|304386215|ref|ZP_07368548.1| ATP-dependent Clp protease proteolytic subunit [Pediococcus acidilactici DSM 20284] gi|270280750|gb|EFA26584.1| Clp protease [Pediococcus acidilactici 7_4] gi|304327572|gb|EFL94799.1| ATP-dependent Clp protease proteolytic subunit [Pediococcus acidilactici DSM 20284] Length = 197 Score = 45.0 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 59/192 (30%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D +I ++ + DS + + ++SPGG AG AI+ + +K Sbjct: 29 IIMLSGPIDDDLANSIISQLLFLDAQDSEKDIYLYINSPGGVVTAGLAIYDTMNFIKADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ S A S V + ++ Sbjct: 89 QTIVMGMAASMASVLASSGTKGKRFALPHSEVMIHQPSGGAQGQQTEIEIAAEQ------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + ++++E+ P +K + Sbjct: 143 ------------------------ILKTRKELNKILAENSGQPLEKINLDTERDNYLSAQ 178 Query: 217 EAKKVGLIDVVG 228 +A GLID + Sbjct: 179 DAVDYGLIDGIM 190 >gi|299529913|ref|ZP_07043341.1| ATP-dependent Clp protease proteolytic subunit [Comamonas testosteroni S44] gi|298722085|gb|EFI63014.1| ATP-dependent Clp protease proteolytic subunit [Comamonas testosteroni S44] Length = 201 Score = 45.0 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 26/197 (13%), Positives = 63/197 (31%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D+ + ++ + ++ + + ++SPGG +G A++ +Q +K+ Sbjct: 33 VIFLNGEVNDAVSALVCAQLLFLEAENPDKPIHLYINSPGGVITSGLAMYDTMQFIKSPV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + S+ + + + P + + + + Sbjct: 93 HTLC--------------------MGTARSMGSFLLMAGE-PGHRMAMPNASLHVHQPLG 131 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + RL ++ Y + L R T Sbjct: 132 GVRGQASDIRIHAEEMLR---------TKDRVTRLYAQHCGRSYQEVERDLDRDRFMTAK 182 Query: 217 EAKKVGLIDVVGGQEEV 233 EA++ GLID V + Sbjct: 183 EAREWGLIDKVLDRRTA 199 >gi|291296198|ref|YP_003507596.1| hypothetical protein Mrub_1818 [Meiothermus ruber DSM 1279] gi|290471157|gb|ADD28576.1| protein of unknown function DUF107 [Meiothermus ruber DSM 1279] Length = 424 Score = 45.0 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 34/277 (12%), Positives = 83/277 (29%), Gaps = 40/277 (14%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-QELIERIERISRDDSATALIVSL 73 L ++ L V F+ I I G I+ +E+ + + A+ ++ + Sbjct: 4 LLVILLLVASFA--------QARTYIIPIEGTIDGPLATFVEQSLDQAEREGASGVVFRV 55 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 ++PGG A I I + + A + +L+ Sbjct: 56 NTPGGRVDAAIRITDRILS------------------STVPTLAVVENAFSAGALISLAA 97 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 L V+I + + A+ S + K + + + + Sbjct: 98 QQIMMLPGSNIGAALPVTITPIVGNTNAADRKVISALKGKFRAVAEARNRPAN------I 151 Query: 194 SESRNIPYDKTLVLSDGR---IWTGAEAKKVGLID-VVGGQEEVWQSLYALGVDQSIRKI 249 +E+ P + ++ + A ++ + D V + G + +++ Sbjct: 152 AEAMVDPEVEVRGITTRGEPLTLSARRAVELKVADAEVASLRAALEKA---GFNTDTQEL 208 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + + F ++ L + L+ + G Sbjct: 209 QPGPQVRVARFLTDPTIAAILLAVGVLGLILEFFTPG 245 >gi|260773194|ref|ZP_05882110.1| ATP-dependent Clp protease proteolytic subunit [Vibrio metschnikovii CIP 69.14] gi|260612333|gb|EEX37536.1| ATP-dependent Clp protease proteolytic subunit [Vibrio metschnikovii CIP 69.14] Length = 208 Score = 45.0 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 62/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + + + + S Sbjct: 102 STLCVGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLG---GFQGQASDIQIHAQEILS 158 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K L++E P D + Sbjct: 159 IKNK---------------------------LNTLLAEHTGQPLDVIERDTDRDNFMSAQ 191 Query: 217 EAKKVGLIDVVGG 229 +A G++D + Sbjct: 192 QAVDYGIVDAILT 204 >gi|229821079|ref|YP_002882605.1| Endopeptidase Clp [Beutenbergia cavernae DSM 12333] gi|229566992|gb|ACQ80843.1| Endopeptidase Clp [Beutenbergia cavernae DSM 12333] Length = 213 Score = 45.0 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 60/182 (32%), Gaps = 31/182 (17%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 ++ ++ ++ ++ +D + + ++SPGGS AG AI+ +Q V+ + + Sbjct: 49 NANQICGQMMLLAAEDPTKDIWLYINSPGGSVTAGMAIYDTMQYVQPDVATVAMGMAASM 108 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 L S A A + V Sbjct: 109 GQFLLASGAKGKRYATPHARVMMHQPSGGIGG---------------------------- 140 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVV 227 +++ +++ L +E ++ +D R +T EA++ G ID V Sbjct: 141 --TATDIRINAELILHMKRVMAELTAEQTGKTVEQVNADADRDRWFTAEEAREYGFIDHV 198 Query: 228 GG 229 Sbjct: 199 VT 200 >gi|221638467|ref|YP_002524729.1| periplasmic serine protease [Rhodobacter sphaeroides KD131] gi|221159248|gb|ACM00228.1| Periplasmic serine protease [Rhodobacter sphaeroides KD131] Length = 304 Score = 45.0 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 78/223 (34%), Gaps = 24/223 (10%) Query: 39 ARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 A + +RG + + L E + ++ + A A+++ + SPGG EA Sbjct: 60 AVVPVRGILTPNMAQYERWFGWATYHGLAETLAHLAASEDAAAIVLEIDSPGGLVCGIEA 119 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 AI KPV V +AASA Y ++ + IV ++ GSIGV + Sbjct: 120 AAEAIAAAAVVKPVHALVSPLAASAAYWLASQATEIVMTPGAVAGSIGV---ALTAAAHV 176 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204 + + S A +Q +D + F VS R IP + Sbjct: 177 QPGANGAQIFEMSSRHARAKRPDASTEAGRAELQRSLDEAEAAFHAAVSAGRAIPAAELA 236 Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 G + EA + GL D + + L A Sbjct: 237 ARLSVTDDPQDGGATFRAPEAIRRGLADRTETRAAFYARLTAR 279 >gi|300856458|ref|YP_003781442.1| ATP-dependent Clp protease proteolytic subunit [Clostridium ljungdahlii DSM 13528] gi|300436573|gb|ADK16340.1| ATP-dependent Clp protease proteolytic subunit [Clostridium ljungdahlii DSM 13528] Length = 194 Score = 45.0 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 31/191 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + GQ+ D + ++ ++ + D+ + + ++SPGGS AG AI+ +Q +++ Sbjct: 29 IVMLNGQVTDEAASSIVAQLLFLESDNPDSDINFYINSPGGSITAGMAIYDTMQYIRSDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A S +L P V + I+ Sbjct: 89 STICVGMAASMGSFLLAAGAKGKRFALPNS-----EILIHQPSVYGGMQGQATDIEI--- 140 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + RL SE P +K + + Sbjct: 141 --------------------HTKWLLGIKKKMNRLYSEMTGKPIEKIEKDVERDYFMSAK 180 Query: 217 EAKKVGLIDVV 227 EA GL+D + Sbjct: 181 EALDYGLVDKI 191 >gi|29654774|ref|NP_820466.1| nfeD family protein [Coxiella burnetii RSA 493] gi|29542042|gb|AAO90980.1| non-proteolytic membrane spanning protein, peptidase family S49 [Coxiella burnetii RSA 493] Length = 458 Score = 45.0 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 73/232 (31%), Gaps = 23/232 (9%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVAR-IAIRGQI--EDSQELIERIERIS 61 K+I R + ++T ++ + ++N+ +A I I+G I + +++ + Sbjct: 4 RKRIFIRCFYILMLTFGLLGIASHIIAQNNTRRLAILIDIKGGIGPATADFFHRSLKQAT 63 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 A +I+ L +PGG A I + I + + A + Sbjct: 64 E-KKAQVIILQLDTPGGLVTAMRDIIKDILA---------------SPIPVIGYVAPSGA 107 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS---PMKAEPSPFSEVNPKAVQMM 178 AA L E ++ P Sbjct: 108 HAASAGTYILYATHIAAMAPGTNLGAATPIAIGTPGGSSPEKGNEKKEGAKKAPAQKTAA 167 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229 + S ++R +++ R + + + + EA K+ +I+++ Sbjct: 168 EKKAISDARAYIRSLAQLRGRNVEWAESAVDEAESLSAEEAYKIKVINIIAS 219 >gi|291277236|ref|YP_003517008.1| ATP-dependent clp protease proteolytic subunit [Helicobacter mustelae 12198] gi|290964430|emb|CBG40280.1| ATP-dependent clp protease proteolytic subunit [Helicobacter mustelae 12198] Length = 195 Score = 45.0 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I D + ++ ++ + +D+ + ++SPGG+ + +I+ + ++ Sbjct: 29 IVLLSGEINDMVASSIVAQLLFLEAEDAQKDIYFYINSPGGAVTSAFSIYDTMHYIRPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I +A A L S A + S + L ++ Sbjct: 89 ATICVGQAASAGALLLSSGAKGKRYSLPNSRIMIHQPLGGAQGQATDIE----------- 137 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + + +++ + K + Sbjct: 138 -------------------IQANEILRLKKILNEILASNTGQSLKKVSQDTERDFFMSAM 178 Query: 217 EAKKVGLIDVV 227 EA+K GL+D V Sbjct: 179 EAQKYGLVDKV 189 >gi|238751006|ref|ZP_04612502.1| ATP-dependent Clp protease proteolytic subunit [Yersinia rohdei ATCC 43380] gi|238710696|gb|EEQ02918.1| ATP-dependent Clp protease proteolytic subunit [Yersinia rohdei ATCC 43380] Length = 207 Score = 45.0 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 61/196 (31%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + + ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 IIFLTGQVEDHMANLITAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + ++ Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 156 ------------------------ILKVKSRMNELMAHHTGKSLEEIERDTERDRFLSAE 191 Query: 217 EAKKVGLIDVVGGQEE 232 +A + GL+D V + + Sbjct: 192 QAVEYGLVDSVFTRRD 207 >gi|15596998|ref|NP_250492.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas aeruginosa PAO1] gi|116049751|ref|YP_791442.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas aeruginosa UCBPP-PA14] gi|218892245|ref|YP_002441112.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas aeruginosa LESB58] gi|254234895|ref|ZP_04928218.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas aeruginosa C3719] gi|254240194|ref|ZP_04933516.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas aeruginosa 2192] gi|296389808|ref|ZP_06879283.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas aeruginosa PAb1] gi|18203012|sp|Q9I2U1|CLPP1_PSEAE RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; AltName: Full=Endopeptidase Clp 1 gi|9947784|gb|AAG05190.1|AE004606_4 ATP-dependent Clp protease proteolytic subunit [Pseudomonas aeruginosa PAO1] gi|115584972|gb|ABJ10987.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas aeruginosa UCBPP-PA14] gi|126166826|gb|EAZ52337.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas aeruginosa C3719] gi|126193572|gb|EAZ57635.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas aeruginosa 2192] gi|218772471|emb|CAW28253.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas aeruginosa LESB58] Length = 213 Score = 45.0 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 45 IIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L A+ S + L + ++ I +K Sbjct: 105 STTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAKEILFIK- 163 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 ++++ P D R +G Sbjct: 164 -----------------------------ERLNQILAHHTGQPLDVIARDTDRDRFMSGD 194 Query: 217 EAKKVGLIDVVGGQEEV 233 EA K GLID V Q ++ Sbjct: 195 EAVKYGLIDKVMTQRDL 211 >gi|292670226|ref|ZP_06603652.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas noxia ATCC 43541] gi|292648178|gb|EFF66150.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas noxia ATCC 43541] Length = 197 Score = 45.0 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 59/194 (30%), Gaps = 33/194 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+DS ++ ++ + +D + + ++SPGG AG AI+ +Q +K Sbjct: 24 IIFLGGPIDDSVANVVVAQMLFLESEDPDKDIHLYINSPGGVVTAGLAIYDTMQYIKPDV 83 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + + L Sbjct: 84 STICIGQAASMGSILLTAGAKGKRYALPHARIMIHQPLGGAQGQST-------------- 129 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 +Q+ + +++ K + Sbjct: 130 ----------------DIQIQAKEILRLREVGNHILARHTGQDEKKINVDTERDNFMSAE 173 Query: 217 EAKKVGLIDVVGGQ 230 EAK GLID V + Sbjct: 174 EAKAYGLIDEVVTR 187 >gi|221633249|ref|YP_002522474.1| putative protease/transporter [Thermomicrobium roseum DSM 5159] gi|221156799|gb|ACM05926.1| putative protease/transporter [Thermomicrobium roseum DSM 5159] Length = 469 Score = 45.0 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 70/234 (29%), Gaps = 31/234 (13%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDS 65 +++R + L L+ + + S V + I G I + + + + + D Sbjct: 7 LRSRCMSLFLMIVGLALLGQSGAAAST--RVYLVEIDGAITPVVASYVDRALRQAA-DQG 63 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 A A+++ L +PGG + A + I + I + + ++ A AA Sbjct: 64 AEAVVIQLDTPGGLSSAMDEIIQDI---------------LQSPVPVIVYVAPEGARAAS 108 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 + + + S V P + K V + S Sbjct: 109 AGVF----ITYAAHIAAMAPATNIGSASPVLIGQDGQAAQPDDTMQRKVVNDAVAKIRSL 164 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 RN + + + + + +A ++D+V Sbjct: 165 AER------RGRNADWAE-QAVREAVNISAEQAVAQNVVDLVAPSLPALLDAVD 211 >gi|161830099|ref|YP_001597323.1| nfeD family protein [Coxiella burnetii RSA 331] gi|161761966|gb|ABX77608.1| nfeD family protein [Coxiella burnetii RSA 331] Length = 458 Score = 45.0 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 73/232 (31%), Gaps = 23/232 (9%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVAR-IAIRGQI--EDSQELIERIERIS 61 K+I R + ++T ++ + ++N+ +A I I+G I + +++ + Sbjct: 4 RKRIFIRCFYILMLTFGLLGIASHIIAQNNTRRLAILIDIKGGIGPATADFFHRSLKQAT 63 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 A +I+ L +PGG A I + I + + A + Sbjct: 64 E-KKAQVIILQLDTPGGLVTAMRDIIKDILA---------------SPIPVIGYVAPSGA 107 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS---PMKAEPSPFSEVNPKAVQMM 178 AA L E ++ P Sbjct: 108 HAASAGTYILYATHIAAMAPGTNLGAATPIAIGTPGGSSPEKGNEKKEGAKKAPAQKTAA 167 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229 + S ++R +++ R + + + + EA K+ +I+++ Sbjct: 168 EKKAISDARAYIRSLAQLRGRNVEWAESAVVEAESLSAEEAYKIKVINIIAS 219 >gi|320103932|ref|YP_004179523.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera pallida ATCC 43644] gi|319751214|gb|ADV62974.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera pallida ATCC 43644] Length = 252 Score = 45.0 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 63/190 (33%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I++ + LI++ + ++ + ++SPGGS Y+ A++ +Q V Sbjct: 49 IIFLEGPIDNVIANHLIKQFLYLQFENRTQGISFYINSPGGSVYSTLAVYDTMQFVNCPI 108 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + +A L + S + Sbjct: 109 ATYCIGMAASGAAVLLAGGTKGKRFSLPHSKIMIHQPSG-------------------YV 149 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 ++ ++ K +++ +++ +++ R T AE Sbjct: 150 GGQVSDIEIQADEILKNKKLINEILAKHTGQPYERIAK----------DTERDRYLTAAE 199 Query: 218 AKKVGLIDVV 227 AK+ GL+D V Sbjct: 200 AKEYGLVDEV 209 >gi|78779795|ref|YP_397907.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT 9312] gi|123969045|ref|YP_001009903.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus marinus str. AS9601] gi|126696838|ref|YP_001091724.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT 9301] gi|157413876|ref|YP_001484742.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT 9215] gi|254526963|ref|ZP_05139015.1| Clp protease [Prochlorococcus marinus str. MIT 9202] gi|115311346|sp|Q319H4|CLPP2_PROM9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2; AltName: Full=Endopeptidase Clp 2 gi|78713294|gb|ABB50471.1| ATP-dependent Clp protease proteolytic subunit ClpP [Prochlorococcus marinus str. MIT 9312] gi|123199155|gb|ABM70796.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. AS9601] gi|126543881|gb|ABO18123.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT 9301] gi|157388451|gb|ABV51156.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT 9215] gi|221538387|gb|EEE40840.1| Clp protease [Prochlorococcus marinus str. MIT 9202] Length = 203 Score = 45.0 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 32/189 (16%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 + I +S L+ ++ + DD++ + + ++SPGGS AG AI+ I+ VK+ I Sbjct: 38 EVNDGIANS--LVAQMLYLDSDDNSKPIYLYINSPGGSVTAGLAIYDTIKYVKSDVVTIC 95 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + A L + VA S + L + ++ Sbjct: 96 VGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTSQRQASDIEIEAK---------- 145 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220 + +++ ++K +D + + EAK Sbjct: 146 -------------------EILRIKDMLNMSMADMTGQSFEKIEKDTDRDYFLSAEEAKN 186 Query: 221 VGLIDVVGG 229 GLID V Sbjct: 187 YGLIDRVIT 195 >gi|270156951|ref|ZP_06185608.1| ATP-dependent Clp protease proteolytic subunit ClpP [Legionella longbeachae D-4968] gi|289164625|ref|YP_003454763.1| ATP-dependent Clp protease proteolytic subunit [Legionella longbeachae NSW150] gi|269988976|gb|EEZ95230.1| ATP-dependent Clp protease proteolytic subunit ClpP [Legionella longbeachae D-4968] gi|288857798|emb|CBJ11642.1| ATP-dependent Clp protease proteolytic subunit [Legionella longbeachae NSW150] Length = 212 Score = 45.0 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 64/196 (32%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED + ++ ++ + ++ + + ++SPGG AG AI+ IQ +K Sbjct: 41 IIFLLGEVEDHMANLVVAQLLFLESENPEKDISLYINSPGGVVTAGLAIYDTIQFIKPDV 100 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + +A+A L + A S V L Y ++ +V Sbjct: 101 STLCIGQAASAAALLLCAGADGKRFCLPNSRVMIHQPLGGYRGQATDIEIHARETLTV-- 158 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 ++++ D+ + Sbjct: 159 ----------------------------RERLNNIMAKHTKKTPDQIMRDTERDNFMSAT 190 Query: 217 EAKKVGLIDVVGGQEE 232 +A + GLID V E Sbjct: 191 QAVEYGLIDKVLYDRE 206 >gi|257456332|ref|ZP_05621529.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema vincentii ATCC 35580] gi|257446418|gb|EEV21464.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema vincentii ATCC 35580] Length = 201 Score = 45.0 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 56/167 (33%), Gaps = 7/167 (4%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D+ ++ ++ + + + + ++SPGGS AG A++ +Q + Sbjct: 34 IIFVDGEITDATADLVVAQLLFLESQNPDKDISLYINSPGGSVTAGLAVYDTMQHIHPNV 93 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL-----DKLGVSI 152 I + +A L + A +S V + + L + Sbjct: 94 QTICLGQAASMAAVLLAGGSKGKRFALPSSRVMIHQPWGGAQGQASDITIQAREILRLKK 153 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 ++ + + ++ + V +V + R Sbjct: 154 LIIQYCAHHTGKTESAVAEDMERDFFMSAQEACEYGIVDMVMDRRKN 200 >gi|309388894|gb|ADO76774.1| ATP-dependent Clp protease proteolytic subunit ClpP [Halanaerobium praevalens DSM 2228] Length = 198 Score = 45.0 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 60/187 (32%), Gaps = 29/187 (15%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + +I ++ + D+ + + ++SPGGS A A++ +Q +K I +A Sbjct: 41 ANTVIAQLLFLEADNPDKDIYLYINSPGGSVTAALAMYDTMQYIKPDVVTIGMGQAASAG 100 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L + A A + V + + + Sbjct: 101 ALLLAAGAEGKRYALPYARVMIHQPAGGAQGKATEAEIHIKELMRI-------------- 146 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 +++ +++ +++ + T EA GLID V Sbjct: 147 -----RELLNEILSQHTGQTAEKIAQ----------DVEKDYFMTAKEAVDYGLIDEVIT 191 Query: 230 QEEVWQS 236 + E+ + Sbjct: 192 RNELNEK 198 >gi|229193795|ref|ZP_04320727.1| Peptidase S14 ClpP [Bacillus cereus ATCC 10876] gi|228589678|gb|EEK47565.1| Peptidase S14 ClpP [Bacillus cereus ATCC 10876] Length = 241 Score = 45.0 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 81/243 (33%), Gaps = 49/243 (20%) Query: 41 IAIRGQIEDS---QEL-IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 I + G I +S + + I+R + + + ++S GGS + G +I+ +++ ++ Sbjct: 24 IYVYGTIGESWWEESVSANAIKRKLNNVKDGDIHLYINSFGGSVFDGISIYNQLKRHSSK 83 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 VI V +AASA LI+ A + I+ S++ + Sbjct: 84 --VIVHVDGIAASAASLIAMAGDEIIMPANSMLMVH------------------RASTFA 123 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216 + + ++ + + + +L + T Sbjct: 124 WGNREVFEQQLNALDKIDQSVTNTYMKRFV-----------GERSEMEDLLKNETWLTAE 172 Query: 217 EAKKVGLIDVVGGQEE--------------VWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 E K GL D + ++E + Q A ++ +++ PK Sbjct: 173 ECKAFGLCDEIADEKEDPNEEPSPEDVKNNLLQKYTAKAGQKTSNQVEGVEEPKKPITNM 232 Query: 263 LKN 265 + N Sbjct: 233 MMN 235 >gi|152986423|ref|YP_001348854.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas aeruginosa PA7] gi|150961581|gb|ABR83606.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas aeruginosa PA7] Length = 213 Score = 45.0 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 65/196 (33%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 45 IIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L A+ S + L + ++ I +K Sbjct: 105 STTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAKEILFIK- 163 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 ++++ P D R +G Sbjct: 164 -----------------------------ERLNQVLAHHTGQPLDVIARDTDRDRFMSGD 194 Query: 217 EAKKVGLIDVVGGQEE 232 EA K GLID V Q + Sbjct: 195 EAVKYGLIDKVMTQRD 210 >gi|110633522|ref|YP_673730.1| ATP-dependent Clp protease proteolytic subunit [Mesorhizobium sp. BNC1] gi|116243101|sp|Q11J60|CLPP1_MESSB RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; AltName: Full=Endopeptidase Clp 1 gi|110284506|gb|ABG62565.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chelativorans sp. BNC1] Length = 210 Score = 45.0 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 59/200 (29%), Gaps = 33/200 (16%) Query: 40 RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G +ED + ++ + ++ + + ++SPGG +G AI+ +Q ++ Sbjct: 37 IIFITGPVEDGMATLVCAQLLFLEAENPKKEIALYINSPGGVVTSGMAIYDTMQFIQ--- 93 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 ++L + + + + + Sbjct: 94 -------------------------PPVSTLCIGQAASMGSLLLCAGHKDMRFATPNARV 128 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + + YD L T Sbjct: 129 MVHQPSGGFQGQASDIERHAQD--IIKLKRRLNEIYVKHTGQDYDTIERTLDRDHFMTAD 186 Query: 217 EAKKVGLIDVVGGQEEVWQS 236 EA+ GL+D V + E ++ Sbjct: 187 EAQAFGLVDRVISEREAIEA 206 >gi|224013265|ref|XP_002295284.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220969007|gb|EED87350.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 198 Score = 45.0 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 60/186 (32%), Gaps = 33/186 (17%) Query: 43 IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102 + +I + L+ ++ ++ +D + + ++SPGGS AG AI+ +Q V + Sbjct: 29 VDDEIANV--LVAQLLYLANEDPTKDITLYINSPGGSVSAGMAIYDTMQYVPCDVSTVCF 86 Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 + A L + A A + + L ++ I + Sbjct: 87 GMAASMGAFLLGAGAPGKRRALPNARIMIHQPLGGAQGQAADIEIQAKEILFI------- 139 Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKV 221 ++E + P DK D + T EA Sbjct: 140 -----------------------REVLNTYIAEYCDQPKDKIEADCDRDFFMTAEEAVDY 176 Query: 222 GLIDVV 227 G+ID + Sbjct: 177 GIIDEM 182 >gi|329767857|ref|ZP_08259372.1| ATP-dependent Clp protease proteolytic subunit [Gemella haemolysans M341] gi|328838776|gb|EGF88373.1| ATP-dependent Clp protease proteolytic subunit [Gemella haemolysans M341] Length = 215 Score = 45.0 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 57/196 (29%), Gaps = 34/196 (17%) Query: 40 RIAIRGQIEDSQ---ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 RI I G + Q + ++ + DS + ++SPGGS AG AI+ +Q +K Sbjct: 28 RIIILGSDVNDQVANSITSQLLFLEAQDSEKDIYFYINSPGGSVTAGFAIYDTMQHIKCD 87 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 I + A L + A + V L ++ Sbjct: 88 VVTICMGMAASMGAFLLAAGTIGKRYALPNAEVMIHQPLGGAQGQATEIEIAAK------ 141 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTG 215 + + +++++ T Sbjct: 142 ------------------------HILRTREKLNKILADRTGQTIKAIERDTERDNYLTA 177 Query: 216 AEAKKVGLIDVVGGQE 231 EA + GL+D V E Sbjct: 178 EEACEYGLVDKVMYPE 193 >gi|226501814|ref|NP_001150578.1| LOC100284211 [Zea mays] gi|195640324|gb|ACG39630.1| ATP-dependent Clp protease proteolytic subunit [Zea mays] Length = 260 Score = 45.0 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ A + + ++SPGG AG AI+ +Q +++ Sbjct: 63 IVCIHGPITDDTASLVVAQLLFLESENPAKPVHLYINSPGGVVTAGLAIYDTMQYIRSPV 122 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + ++ L + AS A + V Sbjct: 123 TTLCIGQAASMASLLLAAGASGQRRALPNARVMIHQPSGGASGQ---------------- 166 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + ++ ++ D+ + Sbjct: 167 --------------ASDIAIHAKEILKVRDRLNKIYAKHTGQAIDRIEQCMERDMFMDPE 212 Query: 217 EAKKVGLIDVV 227 EA GLID V Sbjct: 213 EAHDWGLIDEV 223 >gi|170760538|ref|YP_001788551.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum A3 str. Loch Maree] gi|226706446|sp|B1L1D7|CLPP_CLOBM RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|169407527|gb|ACA55938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum A3 str. Loch Maree] Length = 194 Score = 45.0 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + ++ D+ ++ ++ + +D + + ++SPGGS +G AI+ +Q +K Sbjct: 29 IIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L++ A A S V L + +G+ + + Sbjct: 89 STICVGMAASMGAFLLVAGAKGKRYALPNSEVMIHQPLG---GFQGQATDIGIHAERILK 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K S+ P ++ + Sbjct: 146 MKKKLNTIL---------------------------SDRTGKPLEQVELDTERDHFLSAE 178 Query: 217 EAKKVGLIDVVGG 229 EAK+ GLID V Sbjct: 179 EAKEYGLIDEVID 191 >gi|300866516|ref|ZP_07111206.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria sp. PCC 6506] gi|300335473|emb|CBN56366.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria sp. PCC 6506] Length = 229 Score = 45.0 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 65/179 (36%), Gaps = 31/179 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + ++ ++ + +D + + ++SPGGS AG AI+ +Q+V+ I + Sbjct: 64 ADSIVAQLLFLDAEDPEKDIQLYINSPGGSVTAGMAIYDTMQQVRPDVVTICYGLAASMG 123 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A + + A+ ++ +S + L + + + K + K Sbjct: 124 AFLMAAGAAGKRMSLPSSRIMIHQPLG---GAQGQAVDIEIQAKEILYHKRK-------- 172 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 L++ P ++ ++ + + AEAK GL+D V Sbjct: 173 -------------------LNELLAHHTGQPLERIEADTERDFFMSAAEAKDYGLVDQV 212 >gi|229104552|ref|ZP_04235218.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus Rock3-28] gi|228678888|gb|EEL33099.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus Rock3-28] Length = 239 Score = 45.0 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 69/221 (31%), Gaps = 43/221 (19%) Query: 31 VEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGSA 80 + + A + I G+I S ++ + + + ++SPGGS Sbjct: 2 KASANGNTADVFIYGEITKYAWEEYGEVSSITFKNELDELGN--GIETINLYINSPGGSV 59 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + AI +Q+ + VI+ + + AS ++ S+ I+ S++ V + Y Sbjct: 60 FETMAIIAMLQRHPAK--VISYIDGIGASCASVLPMISDKIIMYANSML---MVHNAWTY 114 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 D+L + ++ + L + Sbjct: 115 ASGNADQLRKAADDIE-------------------------RINKSMVQHYLTRAGDKLD 149 Query: 201 YDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYAL 240 D L D W + EA + GL D + L Sbjct: 150 EDILKQLLDAETWLSADEAMEYGLCDEIISANNAAACLDEK 190 >gi|256823172|ref|YP_003147135.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kangiella koreensis DSM 16069] gi|256796711|gb|ACV27367.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kangiella koreensis DSM 16069] Length = 205 Score = 45.0 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 58/195 (29%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I GQ+ED + ++ ++ + D+ + + ++SPGG AG +I+ +Q ++ Sbjct: 38 VIFCVGQVEDYMANSIVAQMLFLESDNPDKDIYLYINSPGGVVTAGLSIYDTMQFIRPDV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S + L + + I +K Sbjct: 98 STVCVGQAASMGALLLTGGAKGKRHTLPNSRMMIHQPLGGFQGQASDIAIHAQEITELKH 157 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 +++ ++ T Sbjct: 158 ------------------------------RLNSIMAHHCGKTVEEVERDTDRDNFLTAD 187 Query: 217 EAKKVGLIDVVGGQE 231 EA + GL+D + Sbjct: 188 EAVEYGLVDSIISSR 202 >gi|73542772|ref|YP_297292.1| enoyl-CoA hydratase/isomerase [Ralstonia eutropha JMP134] gi|72120185|gb|AAZ62448.1| Enoyl-CoA hydratase/isomerase [Ralstonia eutropha JMP134] Length = 262 Score = 45.0 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 62/235 (26%), Gaps = 40/235 (17%) Query: 36 PHVARIAI---------RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 VA I + G I L++ + R ++DD+ A+I+ + P + Sbjct: 16 DRVAEILLDSPPVNALNEGMI---DALLDALHRAAKDDAVRAVILGSAVPR--RFCAGLQ 70 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 A+ ++ + I A + G L + + D Sbjct: 71 LDALHGASPQRAYQLVDKLYSGLNEAQFRLGKPSIAAVGGTARGGGMTLAIHCDMIVAAD 130 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 + A R++ R Sbjct: 131 TATFGYPEIDVGVTPAIHYTHLP---------------------RIIGRHRAFDL----- 164 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 L GR + EA +GL++ + + +V AL + + + Sbjct: 165 LFTGRSFGADEAMSLGLVNRIVPEADVMCEARALAQTFCDKSPVVMRMGRTAFLR 219 >gi|56963436|ref|YP_175167.1| hypothetical protein ABC1671 [Bacillus clausii KSM-K16] gi|56909679|dbj|BAD64206.1| conserved hypothetical protein [Bacillus clausii KSM-K16] Length = 454 Score = 45.0 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 3/131 (2%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISRDD 64 K +K V L + + + ++ + + + I I +E + +ER + ++ Sbjct: 3 KWMKFALVSWLLACVLLPFQVLANQADSKNASIYVIPIEQTVERGLEAFLERSFSEAEEN 62 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 A +I+++++PGG+ A I I PV ++ A SAG I+ ++ I+ Sbjct: 63 GADHIILNINTPGGAVDAAGHIANIINST--DIPVTAFINSEAISAGAYIALNADEIIMV 120 Query: 125 ETSLVGSIGVL 135 +GS GV+ Sbjct: 121 PNGQIGSAGVI 131 >gi|145342132|ref|XP_001416147.1| chloroplast Clp protease, subunit of ClpP peptidase complex [Ostreococcus lucimarinus CCE9901] gi|144576372|gb|ABO94440.1| chloroplast Clp protease, subunit of ClpP peptidase complex [Ostreococcus lucimarinus CCE9901] Length = 251 Score = 45.0 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G ++D ++ ++ + D + + ++SPGGS AG A+F ++ ++ Sbjct: 70 IIRLGGAVDDDSCNLIVAQLLWLDAADPTKDITLYVNSPGGSVTAGMAVFDTMRHIRPNV 129 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L S + S + L + + + + Sbjct: 130 STVCVGLAASMGAFLLASGHPGKRYSLPNSRIMIHQPLG---GAQGQAADIEIQANEIMH 186 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +E P + + +D + + Sbjct: 187 HKSTLNGYL---------------------------AEFTKKPLETVMEDTDRDFFMSAK 219 Query: 217 EAKKVGLIDVV 227 EA + GLID + Sbjct: 220 EAVEYGLIDAI 230 >gi|123966708|ref|YP_001011789.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT 9515] gi|123201074|gb|ABM72682.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT 9515] Length = 201 Score = 45.0 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 64/187 (34%), Gaps = 32/187 (17%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 + I +S L+ ++ + DD+ + + ++SPGGS AG AI+ I+ VK+ I Sbjct: 38 EVNDGIANS--LVAQMLYLDSDDNTKPIYLYINSPGGSVTAGLAIYDTIKYVKSDVVTIC 95 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + A L + VA S + L + ++ Sbjct: 96 VGLAASMGAFLLGAGTKGKRVALPHSRIMIHQPLGGTSQRQASDIEIEAR---------- 145 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220 + + +++ ++K +D + + EAK Sbjct: 146 -------------------EILRIKDMLNKSMADMTGQSFEKIEKDTDRDYFLSAEEAKN 186 Query: 221 VGLIDVV 227 GLID V Sbjct: 187 YGLIDRV 193 >gi|292493157|ref|YP_003528596.1| hypothetical protein Nhal_3157 [Nitrosococcus halophilus Nc4] gi|291581752|gb|ADE16209.1| protein of unknown function DUF107 [Nitrosococcus halophilus Nc4] Length = 453 Score = 44.6 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 69/223 (30%), Gaps = 20/223 (8%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR---DDS 65 + +V+ + L + + + + V + I+G I + + ++R D Sbjct: 3 RYLWVLGFIACLCIGLSVPAQQNQGSRGTVLLLDIQGVIGPA--VSGYVQRAMERGGDKG 60 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 A +I+ + +PGG A+ I+ + + A + AA Sbjct: 61 AALIILRMDTPGGLD---RAMRDIIRDILASPVPVV------------GYVAPSGARAAS 105 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 L + + P E E M + ++ + Sbjct: 106 AGTYIMYASHIAAMAPATNLGAATPVQLPMGAPPSPGEGEGKEEGQSSQEAMARKAINDA 165 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 + L ++ + + + EA ++G+ID+V Sbjct: 166 VAYIKGLAAQRGRNAEWAEQAVREAASLSAQEALELGVIDLVA 208 >gi|259047276|ref|ZP_05737677.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Granulicatella adiacens ATCC 49175] gi|259036052|gb|EEW37307.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Granulicatella adiacens ATCC 49175] Length = 197 Score = 44.6 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 61/192 (31%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D +I ++ + D + + ++SPGGS AG AI+ + +K Sbjct: 29 IIMVSGPIQDDMANAIIAQLLFLDAQDPEKDIYMYINSPGGSVTAGLAIYDTMNFIKADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + + L ++ Sbjct: 89 QTIAMGLAASMGSFLLTAGAKGKRYALPNAEILIHQPLGGAQGQATEIEIAARQ------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +++++ + +D + T Sbjct: 143 ------------------------ILKTRERLNKILAKQTGQKLSRIEKDTDRDNYMTAQ 178 Query: 217 EAKKVGLIDVVG 228 EA + GLID + Sbjct: 179 EALEYGLIDAIM 190 >gi|241888864|ref|ZP_04776170.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Gemella haemolysans ATCC 10379] gi|241864540|gb|EER68916.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Gemella haemolysans ATCC 10379] Length = 215 Score = 44.6 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 57/196 (29%), Gaps = 34/196 (17%) Query: 40 RIAIRGQIEDSQ---ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 RI I G + Q + ++ + DS + ++SPGGS AG AI+ +Q +K Sbjct: 28 RIIILGSDVNDQVANSITSQLLFLEAQDSEKDIYFYINSPGGSVTAGFAIYDTMQHIKCD 87 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 I + A L + A + V L ++ Sbjct: 88 VVTICMGMAASMGAFLLAAGTIGKRYALPNAEVMIHQPLGGAQGQATEIEIAAR------ 141 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTG 215 + + +++++ T Sbjct: 142 ------------------------HILRTREKLNKILADRTGQTIKTIERDTERDNYLTA 177 Query: 216 AEAKKVGLIDVVGGQE 231 EA + GL+D V E Sbjct: 178 EEACEYGLVDKVMYPE 193 >gi|224368878|ref|YP_002603040.1| ClpP2 [Desulfobacterium autotrophicum HRM2] gi|223691595|gb|ACN14878.1| ClpP2 [Desulfobacterium autotrophicum HRM2] Length = 499 Score = 44.6 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 47/297 (15%), Positives = 90/297 (30%), Gaps = 20/297 (6%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSP-HVARIAIRGQIEDSQELIERIERIS-- 61 I ++ + +T + E V I + G +E + +ER Sbjct: 11 FLNILWIILLPIFIIVTFQTRVTGTDGEKTDKIKVYEIKVEGPVEPG--MAAFLERALAV 68 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 D A ++ + + GG + AI I + + I V A SAG LIS A N + Sbjct: 69 DDSPAALFVLKMDTFGGRVDSALAIVDLIVNIP-KGRTIAFVVNKAISAGALISLACNDL 127 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 V + + +G + + + S K + + + V V Sbjct: 128 VMKDHTTIGDCAPIMNSSEGPKMMGEKFQSPLRAKFRSLAKRNNYPEALAEAMVSDHIAV 187 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLV---------LSDGRIWT--GAEAKKVGLIDVVGGQ 230 + + R + +S G + T EA+++G + G Sbjct: 188 YEVTEAGQTRYIDSRAYEDLTDDERGAITARKTIISKGELLTMDAIEAERLGFSRMTVGS 247 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + + +F L +S ++ L + K G Sbjct: 248 ---VAEMLERMGVSNYEIVSIEESWSETFFRFLTKISPILMVIGLGALYTEIKSPGF 301 >gi|84387735|ref|ZP_00990751.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus 12B01] gi|218710174|ref|YP_002417795.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus LGP32] gi|254763809|sp|B7VI00|CLPP_VIBSL RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|84377418|gb|EAP94285.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus 12B01] gi|218323193|emb|CAV19370.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus LGP32] Length = 208 Score = 44.6 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 IIFLTGQVEDHMANLVVAQLLFLESENPDKDIYLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L S V L + + I ++K Sbjct: 102 STVCMGQACSMGAFLLAGGTPGKRHVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQ 161 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K L++E P + + Sbjct: 162 KLNK------------------------------LLAEHTGQPLEVVERDTDRDNFMSAD 191 Query: 217 EAKKVGLIDVV 227 +A + GL+D V Sbjct: 192 QAVEYGLVDSV 202 >gi|67921362|ref|ZP_00514880.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501] gi|67856474|gb|EAM51715.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501] Length = 200 Score = 44.6 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 61/179 (34%), Gaps = 29/179 (16%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ + + DD + + ++SPGGS AG AI+ +Q +K+ I + + Sbjct: 47 IVALLLYLDSDDPNKPIYLYINSPGGSVTAGMAIYDTMQYIKSEVITICVGLAASMGSFL 106 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + +A + + L + D + + + Sbjct: 107 LAAGTPGKRLALPHARIMIHQPLGGTGGRRQATDIEIEANEIL----------------- 149 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQ 230 +L+++ +K +D + + EAK+ GLID V + Sbjct: 150 -----------RIRAQLNQLLADQCGQSLEKIEKDTDRDYFMSAEEAKEYGLIDKVIDE 197 >gi|157146946|ref|YP_001454265.1| hypothetical protein CKO_02723 [Citrobacter koseri ATCC BAA-895] gi|157084151|gb|ABV13829.1| hypothetical protein CKO_02723 [Citrobacter koseri ATCC BAA-895] Length = 243 Score = 44.6 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 78 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 137 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 138 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 191 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + + Sbjct: 192 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAS 227 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 228 EAVEYGLVDSILT 240 >gi|153835695|ref|ZP_01988362.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio harveyi HY01] gi|156973712|ref|YP_001444619.1| ATP-dependent Clp protease proteolytic subunit [Vibrio harveyi ATCC BAA-1116] gi|269961045|ref|ZP_06175414.1| ATP-dependent Clp protease proteolytic subunit [Vibrio harveyi 1DA3] gi|226706635|sp|A7MV87|CLPP_VIBHB RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|148867676|gb|EDL66952.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio harveyi HY01] gi|156525306|gb|ABU70392.1| hypothetical protein VIBHAR_01417 [Vibrio harveyi ATCC BAA-1116] gi|269834264|gb|EEZ88354.1| ATP-dependent Clp protease proteolytic subunit [Vibrio harveyi 1DA3] Length = 208 Score = 44.6 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + I ++ Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTI-- 159 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L++E P + + Sbjct: 160 ----------------------------KQKLNNLLAEHTGQPLEVIERDTDRDNFMSAD 191 Query: 217 EAKKVGLIDVV 227 +A + G++D V Sbjct: 192 QAVEYGIVDAV 202 >gi|172039352|ref|YP_001805853.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. ATCC 51142] gi|171700806|gb|ACB53787.1| ATP-dependent Clp protease, proteolytic subunit [Cyanothece sp. ATCC 51142] Length = 229 Score = 44.6 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 63/185 (34%), Gaps = 31/185 (16%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + ++ ++ + +D + + ++SPGGS YAG AI+ +Q+++ I + Sbjct: 64 ADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMG 123 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L A +A +S + L ++ I + Sbjct: 124 AFLLSGGAKGKRMALPSSRIMIHQPLGGAQGQAVEIEIQAKEILYI-------------- 169 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228 +++E P + ++ + + EA GLID V Sbjct: 170 ----------------KKRLNDMLAEHTGQPLETIAADTERDFFMSAQEAVDYGLIDQVI 213 Query: 229 GQEEV 233 + ++ Sbjct: 214 SRPDL 218 >gi|62126693|gb|AAX64396.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease, heat shock protein F215 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 246 Score = 44.6 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 81 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 140 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 141 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 194 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 195 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAP 230 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 231 EAVEYGLVDSILT 243 >gi|238764860|ref|ZP_04625801.1| ATP-dependent Clp protease proteolytic subunit [Yersinia kristensenii ATCC 33638] gi|238696967|gb|EEP89743.1| ATP-dependent Clp protease proteolytic subunit [Yersinia kristensenii ATCC 33638] Length = 207 Score = 44.6 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 61/196 (31%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + + ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 IIFLTGQVEDHMANLITAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + ++ Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHARE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 156 ------------------------ILKVKSRMNELMALHTGKSLEEIERDTERDRFLSAE 191 Query: 217 EAKKVGLIDVVGGQEE 232 +A + GL+D V + + Sbjct: 192 QAVEYGLVDSVFTRRD 207 >gi|238788008|ref|ZP_04631804.1| ATP-dependent Clp protease proteolytic subunit [Yersinia frederiksenii ATCC 33641] gi|238723956|gb|EEQ15600.1| ATP-dependent Clp protease proteolytic subunit [Yersinia frederiksenii ATCC 33641] Length = 194 Score = 44.6 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 61/196 (31%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + + ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 29 IIFLTGQVEDHMANLITAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + ++ Sbjct: 89 STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 143 ------------------------ILKVKSRMNELMAHHTGKSLEEIERDTERDRFLSAE 178 Query: 217 EAKKVGLIDVVGGQEE 232 +A + GL+D V + + Sbjct: 179 QAVEYGLVDSVFTRRD 194 >gi|212212151|ref|YP_002303087.1| non-proteolytic membrane spanning protein, peptidase family S49 [Coxiella burnetii CbuG_Q212] gi|212010561|gb|ACJ17942.1| non-proteolytic membrane spanning protein, peptidase family S49 [Coxiella burnetii CbuG_Q212] Length = 458 Score = 44.6 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 73/232 (31%), Gaps = 23/232 (9%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVAR-IAIRGQI--EDSQELIERIERIS 61 K+I R + + T ++ + ++N+ +A I I+G I + +++ + Sbjct: 4 RKRIFIRCFYILIFTFGLLGIASHIIAQNNTRRLAILIDIKGGIGPATADFFHRSLKQAT 63 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 A +I+ L +PGG A A I + I + + A + Sbjct: 64 E-KKAQVIILQLDTPGGLATAMRDIIKDILA---------------SPIPVIGYVAPSGA 107 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS---PMKAEPSPFSEVNPKAVQMM 178 AA L E ++ P Sbjct: 108 HAASAGTYVLYATHIAAMAPGTNLGAATPIAIGTPGGSSPEKGNEKKEGAKKAPAQKTAA 167 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229 + S ++R +++ R + + + + EA K+ +I+++ Sbjct: 168 EKKAISDARAYIRSLAQLRGRNVEWAESAVVEAESLSAEEAYKIKVINIIAS 219 >gi|163746712|ref|ZP_02154069.1| Endopeptidase Clp [Oceanibulbus indolifex HEL-45] gi|161379826|gb|EDQ04238.1| Endopeptidase Clp [Oceanibulbus indolifex HEL-45] Length = 218 Score = 44.6 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 72/211 (34%), Gaps = 33/211 (15%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I ++ ++ + ++ + + ++SPGG AG +I+ +Q +K + Sbjct: 38 IIFVNGPIHSGMSHLVVAQLLHLEAENPTKEISMYINSPGGEVTAGLSIYDTMQYIKPKV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + C + + ++ G G+ F P + + + + + Sbjct: 98 ST--------------LICGMAASMGSVIAIGGEKGMRFALPNAEVMIHQPSGGSQGMA- 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + ++ + +L + P D D +W T Sbjct: 143 ---------------EDILISARHIERTRERMYQLYVKHSGQPLDVVQKALDRDLWMTPE 187 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 EAK+ G +D + + A + + Sbjct: 188 EAKEWGHLDEIVESRGKAEDAAATAKGKKDK 218 >gi|146282418|ref|YP_001172571.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas stutzeri A1501] gi|145570623|gb|ABP79729.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas stutzeri A1501] Length = 206 Score = 44.6 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 68/196 (34%), Gaps = 31/196 (15%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 38 VIFMVGQVEDYMANLIVAQLLFLEAENPEKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A+ S + L + ++ I ++ Sbjct: 98 STICIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAREILTI-- 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + V+ + +++ +G E Sbjct: 156 -----------------RERLNKVLAHHTGQPMDVIA----------RDTDRDNFMSGEE 188 Query: 218 AKKVGLIDVVGGQEEV 233 A K GLID V Q ++ Sbjct: 189 AVKYGLIDQVLTQRQL 204 >gi|317407024|gb|EFV87052.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter xylosoxidans C54] Length = 201 Score = 44.6 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 62/197 (31%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D+ + ++ + ++ + + ++SPGG +G A++ +Q +K+ Sbjct: 33 IIFLSGEVNDAVSALVCAQLLFLEAENPGKPIHMYINSPGGVITSGLAMYDTMQFIKSPV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + S+ + + + P + L + + Sbjct: 93 HTLC--------------------MGTARSMGSFLLMAGE-PGKRAALANASLHVHQPLG 131 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + +RL +E Y+ L R T Sbjct: 132 GFQGQASDMLIHAEEMQR---------TKQRIIRLYAEHCGRSYEDVERSLDRDRYMTAE 182 Query: 217 EAKKVGLIDVVGGQEEV 233 EA + GLID V Sbjct: 183 EAVEWGLIDHVMDARSA 199 >gi|313892932|ref|ZP_07826509.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Veillonella sp. oral taxon 158 str. F0412] gi|313442285|gb|EFR60700.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Veillonella sp. oral taxon 158 str. F0412] Length = 197 Score = 44.6 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 58/195 (29%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D + +I ++ + +D + + ++SPGG AG AI+ +Q +K Sbjct: 28 IIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMQYIKPDV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A + V L ++ Sbjct: 88 STICVGSAASMGAVLLTAGTKGKRYALPHARVMIHQPLGGVQGQASEIEIHARE------ 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + +++ + + Sbjct: 142 ------------------------ILRMREELNGILASRSGQDIEVVARDTDRDNFMSAQ 177 Query: 217 EAKKVGLIDVVGGQE 231 +A + GLID V +E Sbjct: 178 DAVEYGLIDEVLTRE 192 >gi|115459516|ref|NP_001053358.1| Os04g0525600 [Oryza sativa Japonica Group] gi|113564929|dbj|BAF15272.1| Os04g0525600 [Oryza sativa Japonica Group] gi|215768496|dbj|BAH00725.1| unnamed protein product [Oryza sativa Japonica Group] Length = 309 Score = 44.6 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 58/190 (30%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ A + + ++SPGG AG AI+ +Q +++ Sbjct: 112 IVCIHGPITDDTASLVVAQLLFLESENPAKPVHLYINSPGGVVTAGLAIYDTMQYIRSPV 171 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + ++ L + A A + V + I Sbjct: 172 TTLCIGQAASMASLLLAAGARGERRALPNARVMIHQPSGGASGQASDIAIHAKEI----- 226 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + +S R++ D E Sbjct: 227 ------------LKVRDRLNKIYAKHTSQAIDRIEQCMERDMFMD------------PEE 262 Query: 218 AKKVGLIDVV 227 A GLID V Sbjct: 263 AHDWGLIDEV 272 >gi|38344435|emb|CAE05641.2| OSJNBa0038O10.7 [Oryza sativa Japonica Group] gi|116310954|emb|CAH67891.1| OSIGBa0153E02-OSIGBa0093I20.20 [Oryza sativa Indica Group] gi|125549084|gb|EAY94906.1| hypothetical protein OsI_16707 [Oryza sativa Indica Group] Length = 259 Score = 44.6 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 58/190 (30%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ A + + ++SPGG AG AI+ +Q +++ Sbjct: 62 IVCIHGPITDDTASLVVAQLLFLESENPAKPVHLYINSPGGVVTAGLAIYDTMQYIRSPV 121 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + ++ L + A A + V + I Sbjct: 122 TTLCIGQAASMASLLLAAGARGERRALPNARVMIHQPSGGASGQASDIAIHAKEI----- 176 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + +S R++ D E Sbjct: 177 ------------LKVRDRLNKIYAKHTSQAIDRIEQCMERDMFMD------------PEE 212 Query: 218 AKKVGLIDVV 227 A GLID V Sbjct: 213 AHDWGLIDEV 222 >gi|208434705|ref|YP_002266371.1| ATP-dependent clp protease proteolytic component [Helicobacter pylori G27] gi|210134994|ref|YP_002301433.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori P12] gi|217032887|ref|ZP_03438364.1| hypothetical protein HPB128_152g4 [Helicobacter pylori B128] gi|298736497|ref|YP_003729023.1| ATP-dependent Clp protease, protease subunit [Helicobacter pylori B8] gi|116243140|sp|Q1CT76|CLPP_HELPH RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|226706454|sp|B5Z7F6|CLPP_HELPG RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|208432634|gb|ACI27505.1| ATP-dependent clp protease proteolytic component [Helicobacter pylori G27] gi|210132962|gb|ACJ07953.1| ATP-dependent clp protease proteolytic component [Helicobacter pylori P12] gi|216945381|gb|EEC24049.1| hypothetical protein HPB128_152g4 [Helicobacter pylori B128] gi|298355687|emb|CBI66559.1| ATP-dependent Clp protease, protease subunit [Helicobacter pylori B8] gi|317009196|gb|ADU79776.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori India7] gi|317011009|gb|ADU84756.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori SouthAfrica7] gi|317012604|gb|ADU83212.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori Lithuania75] gi|317178846|dbj|BAJ56634.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori F30] gi|332673403|gb|AEE70220.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori 83] Length = 195 Score = 44.6 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I DS ++ ++ + +D + + ++SPGG +G +I+ + ++ Sbjct: 29 IVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A + S + L ++ + Sbjct: 89 STICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + +++++ ++ +D + + Sbjct: 143 ------------------------ILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAK 178 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 179 EAKEYGLIDKV 189 >gi|15611797|ref|NP_223448.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori J99] gi|308184578|ref|YP_003928711.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori SJM180] gi|6685330|sp|Q9ZL50|CLPP_HELPJ RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|4155294|gb|AAD06311.1| ATP-DEPENDENT PROTEASE, PROTEOLYTIC SUBUNIT [Helicobacter pylori J99] gi|308060498|gb|ADO02394.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori SJM180] gi|317014204|gb|ADU81640.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori Gambia94/24] gi|325996073|gb|ADZ51478.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori 2018] gi|325997669|gb|ADZ49877.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori 2017] Length = 195 Score = 44.6 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I DS ++ ++ + +D + + ++SPGG +G +I+ + ++ Sbjct: 29 IVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A + S + L ++ + Sbjct: 89 STICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + +++++ ++ +D + + Sbjct: 143 ------------------------ILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAK 178 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 179 EAKEYGLIDKV 189 >gi|9633042|ref|NP_050150.1| ClpP-like protease [Lactobacillus phage phiadh] gi|5730299|emb|CAB52520.1| ClpP-like protease [Lactobacillus phage phiadh] Length = 242 Score = 44.6 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 74/241 (30%), Gaps = 44/241 (18%) Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 + I++ + + + + + ++SPGG AG I+ A+++ ++ A Sbjct: 33 KAIKQALNEANGSDVTLEINSPGGYVDAGSEIYTALKE---------YQGQVIAKITGQA 83 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 A++ I A + S ++ S + +N Sbjct: 84 CSAASWIALAADRIEMSPTAQMMIHRAS-----------TISIGNSDDLASDLNALNSLD 132 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEV 233 FV L S+ + + L W EA G D + Q + Sbjct: 133 K------------SFVDLYSQRTGLDAQEVYRLMCNTTWMNAKEAVDKGFADEIMFQNDK 180 Query: 234 WQSLYALGVD-----QSIRKIKDWNPPKN------YWFCDLKNLSISSLLEDTIPLMKQT 282 +L I KIK+ K+ +N S L++ + ++ Sbjct: 181 KPALVNADGSLSVKPDMINKIKNLLHKKSTENVVKPLQPTQENKKTDSQLQEKLAILFGK 240 Query: 283 K 283 + Sbjct: 241 E 241 >gi|148381180|ref|YP_001255721.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum A str. ATCC 3502] gi|153933152|ref|YP_001385555.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum A str. ATCC 19397] gi|153934525|ref|YP_001388961.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum A str. Hall] gi|153939192|ref|YP_001392582.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum F str. Langeland] gi|168179119|ref|ZP_02613783.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum NCTC 2916] gi|168183548|ref|ZP_02618212.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum Bf] gi|170754567|ref|YP_001782870.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum B1 str. Okra] gi|226950659|ref|YP_002805750.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum A2 str. Kyoto] gi|237796687|ref|YP_002864239.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum Ba4 str. 657] gi|166201814|sp|A7FYI2|CLPP_CLOB1 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|166201815|sp|A5I6W1|CLPP_CLOBH RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|166201816|sp|A7GIH2|CLPP_CLOBL RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|226706445|sp|B1IND7|CLPP_CLOBK RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|254763786|sp|C1FLA6|CLPP_CLOBJ RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|148290664|emb|CAL84793.1| ATP-dependent Clp protease proteolytic subunit [Clostridium botulinum A str. ATCC 3502] gi|152929196|gb|ABS34696.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum A str. ATCC 19397] gi|152930439|gb|ABS35938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum A str. Hall] gi|152935088|gb|ABS40586.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum F str. Langeland] gi|169119779|gb|ACA43615.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum B1 str. Okra] gi|182670165|gb|EDT82141.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum NCTC 2916] gi|182673367|gb|EDT85328.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum Bf] gi|226842960|gb|ACO85626.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum A2 str. Kyoto] gi|229261301|gb|ACQ52334.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum Ba4 str. 657] gi|295320566|gb|ADG00944.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum F str. 230613] gi|322807545|emb|CBZ05120.1| ATP-dependent Clp protease proteolytic subunit [Clostridium botulinum H04402 065] Length = 194 Score = 44.6 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + ++ D+ ++ ++ + +D + + ++SPGGS +G AI+ +Q +K Sbjct: 29 IIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A S V L + +G+ + + Sbjct: 89 STICVGMAASMGAFLLAAGAKGKRYALPNSEVMIHQPLG---GFRGQATDIGIHAERILK 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K S+ P ++ + Sbjct: 146 MKKKLNTIL---------------------------SDRTGKPLEQVELDTERDHFLSAE 178 Query: 217 EAKKVGLIDVVGG 229 EAK+ GLID V Sbjct: 179 EAKEYGLIDEVID 191 >gi|85704731|ref|ZP_01035832.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp. 217] gi|85670549|gb|EAQ25409.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp. 217] Length = 210 Score = 44.6 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 24/203 (11%), Positives = 56/203 (27%), Gaps = 33/203 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + + ++SPGG +G +I+ +Q +K + Sbjct: 38 IIFLSGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + S V Y Sbjct: 98 STLVVGQAASMGSLLLTAGEPGMRFSLPNSRVMVHQPSGGYQGQ---------------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + K L + Sbjct: 142 --------------ATDIMIHARETQKLKDRLNEIYVRHTGQTLKKVEEALERDNFMSPD 187 Query: 217 EAKKVGLIDVVGGQEEVWQSLYA 239 EAK GLID + + Sbjct: 188 EAKAWGLIDEIVANRDKVDEAKK 210 >gi|326626794|gb|EGE33137.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 246 Score = 44.6 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 81 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 140 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 141 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 194 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 195 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAP 230 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 231 EAVEYGLVDSILT 243 >gi|33861870|ref|NP_893431.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|67460515|sp|Q7V0F1|CLPP2_PROMP RecName: Full=ATP-dependent Clp protease proteolytic subunit 2; AltName: Full=Endopeptidase Clp 2 gi|33640238|emb|CAE19773.1| Clp protease proteolytic subunit [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 201 Score = 44.6 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 63/187 (33%), Gaps = 32/187 (17%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 + I +S L+ ++ + DD+ + + ++SPGGS AG AI+ I+ VK+ I Sbjct: 38 EVNDGIANS--LVAQMLYLDSDDNTKPIYLYINSPGGSVTAGLAIYDTIKYVKSDVVTIC 95 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + A L + VA S + L + ++ Sbjct: 96 VGLAASMGAFLLGAGTKGKRVALPHSRIMIHQPLGGTSQRQASDIEIEAR---------- 145 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220 + +S+ ++K +D + + EAK Sbjct: 146 -------------------EILRIKDMLNHSMSDMTGQSFEKIEKDTDRDYFLSAEEAKN 186 Query: 221 VGLIDVV 227 GLID V Sbjct: 187 YGLIDRV 193 >gi|107101233|ref|ZP_01365151.1| hypothetical protein PaerPA_01002266 [Pseudomonas aeruginosa PACS2] Length = 192 Score = 44.6 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 24 IIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 83 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L A+ S + L + ++ I +K Sbjct: 84 STTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAKEILFIK- 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 ++++ P D R +G Sbjct: 143 -----------------------------ERLNQILAHHTGQPLDVIARDTDRDRFMSGD 173 Query: 217 EAKKVGLIDVVGGQEEV 233 EA K GLID V Q ++ Sbjct: 174 EAVKYGLIDKVMTQRDL 190 >gi|238759262|ref|ZP_04620429.1| ATP-dependent Clp protease proteolytic subunit [Yersinia aldovae ATCC 35236] gi|238702549|gb|EEP95099.1| ATP-dependent Clp protease proteolytic subunit [Yersinia aldovae ATCC 35236] Length = 194 Score = 44.6 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 61/196 (31%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + + ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 29 IIFLTGQVEDHMANLITAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + ++ Sbjct: 89 STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 143 ------------------------ILKVKSRMNELMAHHTGKSLEEIERDTERDRFLSAQ 178 Query: 217 EAKKVGLIDVVGGQEE 232 +A + GL+D V + + Sbjct: 179 QAVEYGLVDSVFTRRD 194 >gi|289207758|ref|YP_003459824.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thioalkalivibrio sp. K90mix] gi|288943389|gb|ADC71088.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thioalkalivibrio sp. K90mix] Length = 224 Score = 44.6 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 64/210 (30%), Gaps = 33/210 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I G +ED + ++ ++ + ++ + + ++SPGG+ AG AI+ +Q +K + Sbjct: 44 VIFCVGPVEDYMANVIVAQLLFLESENPDKEISLYINSPGGAVTAGMAIYDTMQFIKPQV 103 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A + S V L + +D I + Sbjct: 104 STLCVGQAASMGAVLLAGGAPGKRYSLPHSRVMIHQPLGGFQGQASDIDIHAREILKI-- 161 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 R+++ ++ R T Sbjct: 162 ----------------------------REELNRVLAHHTGQTVEQVEQDTDRDRFMTAV 193 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 EAK GL+D V + + Sbjct: 194 EAKDYGLVDNVLSSRGAPAAGDKDAGKKDK 223 >gi|146310565|ref|YP_001175639.1| ATP-dependent Clp protease proteolytic subunit [Enterobacter sp. 638] gi|145317441|gb|ABP59588.1| ATP-dependent Clp protease proteolytic subunit ClpP [Enterobacter sp. 638] Length = 207 Score = 44.6 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 102 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + + Sbjct: 156 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAS 191 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 192 EAVEYGLVDSILT 204 >gi|86148885|ref|ZP_01067136.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. MED222] gi|85833328|gb|EAQ51535.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. MED222] Length = 198 Score = 44.6 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 32 IIFLTGQVEDHMANLVVAQLLFLESENPDKDIYLYINSPGGSVTAGMSIYDTMQFIKPNV 91 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L S V L + + I ++K Sbjct: 92 STVCMGQACSMGAFLLAGGTPGKRHVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQ 151 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K L++E P + + Sbjct: 152 KLNK------------------------------LLAEHTGQPLEVVERDTDRDNFMSAD 181 Query: 217 EAKKVGLIDVV 227 +A + GL+D V Sbjct: 182 QAVEYGLVDSV 192 >gi|188527362|ref|YP_001910049.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori Shi470] gi|217034159|ref|ZP_03439579.1| hypothetical protein HP9810_868g52 [Helicobacter pylori 98-10] gi|308182950|ref|YP_003927077.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori PeCan4] gi|226706455|sp|B2UT37|CLPP_HELPS RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|188143602|gb|ACD48019.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori Shi470] gi|216943443|gb|EEC22899.1| hypothetical protein HP9810_868g52 [Helicobacter pylori 98-10] gi|261839391|gb|ACX99156.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori 52] gi|297379992|gb|ADI34879.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Helicobacter pylori v225d] gi|308062114|gb|ADO04002.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori Cuz20] gi|308063422|gb|ADO05309.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori Sat464] gi|308065135|gb|ADO07027.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori PeCan4] gi|315586542|gb|ADU40923.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori 35A] gi|317177376|dbj|BAJ55165.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori F16] gi|317180557|dbj|BAJ58343.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori F32] gi|317182104|dbj|BAJ59888.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori F57] Length = 195 Score = 44.6 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I DS ++ ++ + +D + + ++SPGG +G +I+ + ++ Sbjct: 29 IVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A + S + L ++ + Sbjct: 89 STICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + +++++ ++ +D + + Sbjct: 143 ------------------------ILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAK 178 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 179 EAKEYGLIDKV 189 >gi|241696180|ref|XP_002411835.1| ATP-dependent Clp protease, proteolytic subunit, putative [Ixodes scapularis] gi|215504758|gb|EEC14252.1| ATP-dependent Clp protease, proteolytic subunit, putative [Ixodes scapularis] Length = 235 Score = 44.6 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 60/189 (31%), Gaps = 33/189 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G I D S ++ ++ + + + + + ++SPGGS AG I+ +Q + Sbjct: 61 IVCVMGPITDELSSLVVAQLLFLQSESNKKPVHMYINSPGGSVTAGLGIYDTMQYIMPPI 120 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 +A + L + + + + S + Q + + + + Sbjct: 121 STWCIGQACSAGSLLLCAGTAGMRHSLPHSRIMIHQPSGQA---SGQATDIQIHAEEILH 177 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + ++ P + + R + Sbjct: 178 LK---------------------------RVINGMYAKHTKQPLETIESAMERDRFMSAE 210 Query: 217 EAKKVGLID 225 +AK+ G+ID Sbjct: 211 QAKEFGIID 219 >gi|16332068|ref|NP_442796.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp. PCC 6803] gi|2493737|sp|Q59993|CLPP2_SYNY3 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2; AltName: Full=Endopeptidase Clp 2 gi|1001377|dbj|BAA10867.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp. PCC 6803] Length = 226 Score = 44.6 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 61/179 (34%), Gaps = 31/179 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + ++ ++ + +D + + ++SPGGS YAG AI+ +Q+++ I + Sbjct: 61 ADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMG 120 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L +A +S + L ++ I + Sbjct: 121 AFLLSGGCKGKRMALPSSRIMIHQPLGGAQGQAVEIEIQAREILYI-------------- 166 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 ++ E P +K ++ + + EAK+ GLID V Sbjct: 167 ----------------KDRLNTMLVEHTGQPMEKLQEDTERDFFMSAEEAKEYGLIDQV 209 >gi|206578475|ref|YP_002240083.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Klebsiella pneumoniae 342] gi|238893386|ref|YP_002918120.1| ATP-dependent Clp protease proteolytic subunit [Klebsiella pneumoniae NTUH-K2044] gi|288936834|ref|YP_003440893.1| ATP-dependent Clp protease proteolytic subunit ClpP [Klebsiella variicola At-22] gi|290510110|ref|ZP_06549480.1| Clp protease [Klebsiella sp. 1_1_55] gi|206567533|gb|ACI09309.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Klebsiella pneumoniae 342] gi|238545702|dbj|BAH62053.1| ATP-dependent Clp protease proteolytic subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|288891543|gb|ADC59861.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Klebsiella variicola At-22] gi|289776826|gb|EFD84824.1| Clp protease [Klebsiella sp. 1_1_55] Length = 207 Score = 44.6 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 102 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + A Sbjct: 156 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAA 191 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 192 EAVEYGLVDSILT 204 >gi|170755513|ref|YP_001782120.1| putative Clp protease [Clostridium botulinum B1 str. Okra] gi|169120725|gb|ACA44561.1| putative Clp protease [Clostridium botulinum B1 str. Okra] Length = 252 Score = 44.6 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 66/219 (30%), Gaps = 37/219 (16%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRD----DSATALIVSLSSPGGS 79 W + ++ I G I + + D L + ++SPGGS Sbjct: 6 FWEVKNSSENENIGETYIYGDIVSYKWDDTDTTAKSFKEDLDSLGDIDTLNIYINSPGGS 65 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + G AI+ I++ K + V +AAS +I+ A + I + S++ Sbjct: 66 VFQGTAIYNIIKRHKAKIN--IHVDGVAASIASVIAMAGDTIFMPKNSMMMIHN------ 117 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + N Q L + Sbjct: 118 ----------------------PWTFAWGNANELRKQADDLDKIRESLIEAYLSKAGDKL 155 Query: 200 PYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSL 237 + + + D W T E GL D + ++E+ S+ Sbjct: 156 SRETLIEIMDNETWLTAQECYDYGLCDELVEEKEIAASI 194 >gi|283955378|ref|ZP_06372877.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter jejuni subsp. jejuni 414] gi|283793138|gb|EFC31908.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter jejuni subsp. jejuni 414] Length = 194 Score = 44.6 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + ++ ++ + +D A + + ++SPGG +G +I+ + +K Sbjct: 28 IIMLSGEIHDELASSIVAQLLFLEAEDPAKDIYLYINSPGGVITSGFSIYDTMNYIKPNV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A A S + L ++ Sbjct: 88 CTICIGQAASMGAFLLSCGAEGKRFALPNSRIMIHQPLGGARGQATDIE----------- 136 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +++++ K ++ + + Sbjct: 137 -------------------IQAKEILRLKTILNDILAKNTKQKVAKIAKDTERDFFMSAQ 177 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 178 EAKEYGLIDKV 188 >gi|327480673|gb|AEA83983.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas stutzeri DSM 4166] Length = 192 Score = 44.6 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 68/196 (34%), Gaps = 31/196 (15%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 24 VIFMVGQVEDYMANLIVAQLLFLEAENPEKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 83 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A+ S + L + ++ I ++ Sbjct: 84 STICIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAREILTI-- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + V+ + +++ +G E Sbjct: 142 -----------------RERLNKVLAHHTGQPMDVIA----------RDTDRDNFMSGEE 174 Query: 218 AKKVGLIDVVGGQEEV 233 A K GLID V Q ++ Sbjct: 175 AVKYGLIDQVLTQRQL 190 >gi|242281287|ref|YP_002993416.1| hypothetical protein Desal_3832 [Desulfovibrio salexigens DSM 2638] gi|242124181|gb|ACS81877.1| protein of unknown function DUF107 [Desulfovibrio salexigens DSM 2638] Length = 436 Score = 44.6 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 34/244 (13%), Positives = 75/244 (30%), Gaps = 38/244 (15%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR---DDSATA 68 ++ S++ + +V + I+G I +Q + +E DD+ Sbjct: 10 FIYCSIIIAMFFLCLPVESLFAKEVNVLSLEIQGSISPAQ--VHLLEDALEQAGDDNHDL 67 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 +++ L +PGG + + ++ + N K I + + Sbjct: 68 VLLRLDTPGGLGTS---MRELVKIIMNSKIPICVWVGPEGAHAASAGTF----------I 114 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 + V P SP S + + M V Sbjct: 115 TAAAQVAAMSPGTSIGAA------------------SPVSSSGDELPETMSKKVTGDMVS 156 Query: 189 FVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSI 246 ++ ++ R + DG +A + ++D + ++ + L A GV Sbjct: 157 LIKGIARKRGRNIGWYAKSVQDGVSVDAQDAVTLNIVDFMALSVDDFLEQLGARGVLIDG 216 Query: 247 RKIK 250 +K+K Sbjct: 217 KKVK 220 >gi|163731525|ref|ZP_02138972.1| Clp protease, putative [Roseobacter litoralis Och 149] gi|161394979|gb|EDQ19301.1| Clp protease, putative [Roseobacter litoralis Och 149] Length = 208 Score = 44.6 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 57/191 (29%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + D+ A + + ++SPGG +G +I+ +Q +K + Sbjct: 37 IIFLNGPVHDGMSSLIVAQLLHLEADNPAKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + + S + Y Sbjct: 97 STLVIGQAASMGSLLLTAGEAGMRFSLPNSRIMVHQPSGGYQGQ---------------- 140 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + + + K L + Sbjct: 141 --------------ATDIMIHAAETQKLKDRLNEIYVKHTGQTLKKVENALERDNFMSPE 186 Query: 217 EAKKVGLIDVV 227 EAK GLID + Sbjct: 187 EAKDFGLIDEI 197 >gi|330836759|ref|YP_004411400.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta coccoides DSM 17374] gi|329748662|gb|AEC02018.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta coccoides DSM 17374] Length = 200 Score = 44.6 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 60/192 (31%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + + ++ + +D + + + ++SPGGS AG AI+ IQ + + Sbjct: 36 IIFLDGEINDVTADLAVAQLLFLESEDPSKDISLYINSPGGSVTAGLAIYDTIQYIHSDV 95 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L S A+ ++ V + + + Sbjct: 96 QTICIGQAASMAALLLTSGAAGKRFILPSARVMIHQPWGGVQGQATDIGIHAREMSRI-- 153 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 V + + P D+ L Sbjct: 154 ----------------------------KQLTVDIFARHTGHPADQVKKDLERDYFLAAP 185 Query: 217 EAKKVGLIDVVG 228 +A G++D V Sbjct: 186 DAVAYGIVDHVM 197 >gi|323128768|gb|ADX16198.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 246 Score = 44.6 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 81 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 140 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 141 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 194 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 195 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAP 230 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 231 EAVEYGLVDSILT 243 >gi|260584984|ref|ZP_05852727.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Granulicatella elegans ATCC 700633] gi|260157290|gb|EEW92363.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Granulicatella elegans ATCC 700633] Length = 197 Score = 44.6 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 57/193 (29%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D +I ++ + D + + ++SPGGS AG AI+ + +K Sbjct: 29 IIMVSGPIHDDMANAIIAQLLFLDAQDPEKDIYMYINSPGGSVTAGLAIYDTMNFIKADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A + + L ++ Sbjct: 89 QTIAMGLAASMGSFLLTAGTKGKRYALPNAEILIHQPLGGAQGQATEIEIAARQ------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + ++++ +D + T Sbjct: 143 ------------------------ILKTRERLNAILAKQTGQKLKTIEKDTDRDNYMTAQ 178 Query: 217 EAKKVGLIDVVGG 229 EA + GLID + Sbjct: 179 EALEYGLIDAIMT 191 >gi|226310010|ref|YP_002769904.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus brevis NBRC 100599] gi|226092958|dbj|BAH41400.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus brevis NBRC 100599] Length = 193 Score = 44.6 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + ++ ++ ++ +D + + ++SPGGS AG AI ++ V Sbjct: 29 IIFLGSAIDDQVANAVVAQLLFLAAEDPKKDIHLYINSPGGSVTAGMAIIDTMKFVAPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L++ A A + V + Sbjct: 89 STICTGMAASMGAMLLVAGAPGKRYALPNAEVMLHQPWGGSQGQASDIKIAADR------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + H ++SE ++ +D + T A Sbjct: 143 ------------------------IMRHRHMLYTIISERTGKTVEQIEKDADRDYFLTAA 178 Query: 217 EAKKVGLIDVV 227 EA + GLID V Sbjct: 179 EALEYGLIDKV 189 >gi|1145796|gb|AAA84990.1| NfeD [Rhizobium etli] gi|2655362|gb|AAC64872.1| ORF2 [Rhizobium etli] Length = 467 Score = 44.6 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 41/251 (16%), Positives = 86/251 (34%), Gaps = 18/251 (7%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISR 62 L+ + + + +L+ L + + + V + + G I + ++ I+R Sbjct: 11 LRCWRWQPPIFTLLFLLLSAWGLGIPSASDRASV-VLKVNGAIGPAIADYVVRGIQRAGE 69 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNII 121 ++ +++ + +PGG + I RAI + AASAG I AS+I Sbjct: 70 REAV-LIVLQMDTPGGLDTSMREIIRAILASPVPVASFVAPSGARAASAGTYILYASHIA 128 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 V A + +G+ + L V P K P + + Sbjct: 129 VMAPGTNLGAATPIA-----------LSVKPFGGDEEPEKKPSEPSGKQPEAPGNAHEAK 177 Query: 182 VDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLID-VVGGQEEVWQSLYA 239 + ++R ++E RN D + + + A + ID ++ Sbjct: 178 AVNDAVAYIRGLAELRNRNADWAERAVREAASLSSTAAVREHAIDFTAADVNDLLAKAQG 237 Query: 240 LGVDQSIRKIK 250 V +++ Sbjct: 238 RMVRVGQTEVR 248 >gi|332706287|ref|ZP_08426354.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lyngbya majuscula 3L] gi|332354935|gb|EGJ34408.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lyngbya majuscula 3L] Length = 198 Score = 44.6 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 65/189 (34%), Gaps = 33/189 (17%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 + +I + ++I + + +D++ +I+ ++SPGGS AG AI+ +Q +K+ + Sbjct: 38 EVDDEITN--QIIAVMLYLDSEDNSKDIILYINSPGGSVTAGMAIYDTMQHIKSDVVTVC 95 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + + L + +A S + ++ I ++ Sbjct: 96 VGLAASMGSFLLAAGKKGKRIALPHSRIMIHQPSGGTRGQATDIEIEAREILRIRH---- 151 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220 + +++ +K D + + EAK+ Sbjct: 152 --------------------------QLNEIYAQNTGQSLEKIEKDMDRDFFMSADEAKE 185 Query: 221 VGLIDVVGG 229 GLID V Sbjct: 186 YGLIDQVID 194 >gi|184200755|ref|YP_001854962.1| ATP-dependent Clp protease proteolytic subunit [Kocuria rhizophila DC2201] gi|183580985|dbj|BAG29456.1| ATP-dependent Clp protease proteolytic subunit [Kocuria rhizophila DC2201] Length = 220 Score = 44.6 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 57/185 (30%), Gaps = 29/185 (15%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D + + ++SPGGS A AI+ +Q ++ + + Sbjct: 53 TSADDIMAQLLVLESQDPDRDITMYINSPGGSFTAMTAIYDTMQYIRPEIQTVCLGQAAS 112 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A++ L +A + V + D + + Sbjct: 113 AASVLLAGGTPGKRLALPNARVLIHQPAMEGQGGGQASDIEIQANEI------------- 159 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226 W ++ N + + +I T EA++ G+ID Sbjct: 160 ---------------MRMRTWLEETMALHTNKNVEDINRDIERDKILTAKEAQEYGIIDQ 204 Query: 227 VGGQE 231 V Sbjct: 205 VLDSR 209 >gi|81301334|ref|YP_401542.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus elongatus PCC 7942] gi|81170215|gb|ABB58555.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus elongatus PCC 7942] Length = 244 Score = 44.6 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 31/182 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + ++ ++ + +D + + ++SPGGS AG AI+ +Q+V I + Sbjct: 79 ADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMG 138 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L A +A ++ + L ++ Sbjct: 139 AFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIE----------------------- 175 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228 + + L+++ P +K V +D + + EAK GLID V Sbjct: 176 -------IQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 228 Query: 229 GQ 230 + Sbjct: 229 TR 230 >gi|16759428|ref|NP_455045.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763829|ref|NP_459444.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142800|ref|NP_806142.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|162139608|ref|YP_215477.2| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168237562|ref|ZP_02662620.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168261116|ref|ZP_02683089.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465541|ref|ZP_02699423.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194443946|ref|YP_002039691.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451357|ref|YP_002044483.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194734455|ref|YP_002113479.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204930575|ref|ZP_03221505.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207855928|ref|YP_002242579.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213025962|ref|ZP_03340409.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213419494|ref|ZP_03352560.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425858|ref|ZP_03358608.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646005|ref|ZP_03376058.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213853068|ref|ZP_03382600.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238911421|ref|ZP_04655258.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|60391923|sp|P0A1D7|CLPP_SALTY RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp; Flags: Precursor gi|60391924|sp|P0A1D8|CLPP_SALTI RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp; Flags: Precursor gi|67460140|sp|Q57SB5|CLPP_SALCH RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp; Flags: Precursor gi|226706468|sp|B5QTJ6|CLPP_SALEP RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|226706469|sp|B4T9E3|CLPP_SALHS RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|226706470|sp|B4SWU1|CLPP_SALNS RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|226706472|sp|B4TMC6|CLPP_SALSV RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|25289858|pir||AC0558 ATP-dependent clp protease proteolytic chain [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|7594816|dbj|BAA94668.1| serine protease subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16418955|gb|AAL19403.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501719|emb|CAD08907.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|29138432|gb|AAO70002.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|194402609|gb|ACF62831.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409661|gb|ACF69880.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194709957|gb|ACF89178.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631923|gb|EDX50443.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197289522|gb|EDY28885.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320509|gb|EDZ05712.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205350070|gb|EDZ36701.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707731|emb|CAR32016.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245731|emb|CBG23528.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992163|gb|ACY87048.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157059|emb|CBW16543.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911481|dbj|BAJ35455.1| ATP-dependent Clp protease proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084722|emb|CBY94513.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322614726|gb|EFY11655.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618832|gb|EFY15720.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623539|gb|EFY20378.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629162|gb|EFY25941.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631883|gb|EFY28637.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637380|gb|EFY34082.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642065|gb|EFY38675.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647884|gb|EFY44359.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652562|gb|EFY48916.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653276|gb|EFY49609.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660575|gb|EFY56811.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664727|gb|EFY60920.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669220|gb|EFY65370.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670765|gb|EFY66898.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678996|gb|EFY75051.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682025|gb|EFY78050.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685146|gb|EFY81143.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192960|gb|EFZ78183.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196958|gb|EFZ82100.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203943|gb|EFZ88960.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206972|gb|EFZ91925.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323214175|gb|EFZ98933.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214501|gb|EFZ99252.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223058|gb|EGA07401.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227007|gb|EGA11188.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230175|gb|EGA14295.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233913|gb|EGA18002.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238393|gb|EGA22451.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244080|gb|EGA28089.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246241|gb|EGA30224.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251867|gb|EGA35730.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257864|gb|EGA41543.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261123|gb|EGA44715.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264947|gb|EGA48446.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272510|gb|EGA55917.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332987397|gb|AEF06380.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 207 Score = 44.6 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 102 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 156 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAP 191 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 192 EAVEYGLVDSILT 204 >gi|220932330|ref|YP_002509238.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Halothermothrix orenii H 168] gi|259585957|sp|B8CY74|CLPP_HALOH RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|219993640|gb|ACL70243.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Halothermothrix orenii H 168] Length = 198 Score = 44.6 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 54/185 (29%), Gaps = 31/185 (16%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 +I ++ + +D + + ++SPGGS A A++ IQ +K I +A A Sbjct: 44 IIAQLLFLEAEDPDKDIHLYINSPGGSVTAALAMYDTIQYIKPDVATICMGQAASAGALL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L S A + V + Sbjct: 104 LASGTKGKRYALPNARVMIHQPAGGVQGKATEAEIHIKE--------------------- 142 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + ++S+ ++ + T EA + G+ID V + Sbjct: 143 ---------LLRLRERLNEILSKHTGKSVEQISKDVEQDYFMTAEEALEYGIIDEVITKN 193 Query: 232 EVWQS 236 E+ Sbjct: 194 ELKDK 198 >gi|255523909|ref|ZP_05390872.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium carboxidivorans P7] gi|296185149|ref|ZP_06853559.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium carboxidivorans P7] gi|255512340|gb|EET88617.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium carboxidivorans P7] gi|296049983|gb|EFG89407.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium carboxidivorans P7] Length = 194 Score = 44.6 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 65/191 (34%), Gaps = 31/191 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D+ ++ ++ + ++ + ++SPGGS AG AI+ +Q +K+ Sbjct: 29 IIMLNGEVTDASASVIVAQLLFLEANNPDEDIHFYINSPGGSITAGMAIYDTMQYIKSDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A S + + D Sbjct: 89 STICVGMAASMGSFLLAAGEPGKRYALPNSEILIHQPSVYGGFQGQATDI---------- 138 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 ++ D + + ++ SE P ++ + + + Sbjct: 139 ------------------KIHTDWLLKTKKKMNKIYSEKTGKPIEQIEKDMERDYFMSAK 180 Query: 217 EAKKVGLIDVV 227 EA + GL+D + Sbjct: 181 EAVEYGLVDKI 191 >gi|283784263|ref|YP_003364128.1| ATP-dependent clp protease proteolytic subunit [Citrobacter rodentium ICC168] gi|282947717|emb|CBG87272.1| ATP-dependent clp protease proteolytic subunit [Citrobacter rodentium ICC168] Length = 207 Score = 44.6 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 102 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 156 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAP 191 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 192 EAVEYGLVDSILT 204 >gi|238062482|ref|ZP_04607191.1| endopeptidase Clp [Micromonospora sp. ATCC 39149] gi|237884293|gb|EEP73121.1| endopeptidase Clp [Micromonospora sp. ATCC 39149] Length = 212 Score = 44.6 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 63/190 (33%), Gaps = 33/190 (17%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT-EVHEMA 107 + ++ ++ ++ +DS + + ++SPGGS AG A++ ++ V+N + + Sbjct: 54 SANQICAQLLLLAAEDSERDIHLYINSPGGSVSAGMAVYDTMRYVRNDVATLALGMAGSM 113 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A + ++ +PS Sbjct: 114 GQFLLCAGTAGKRYALPHSRIMM-------------------------------HQPSGG 142 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDV 226 + + + + L++ ++ D R +T EA++ GL+D Sbjct: 143 FGGTVADITIQAENMLHVKRTMQELIARHSGRTLEQIRQDWDRDRWFTAEEAREYGLVDQ 202 Query: 227 VGGQEEVWQS 236 V + + + Sbjct: 203 VLTRVDQLAA 212 >gi|206900657|ref|YP_002250483.1| YqeZ [Dictyoglomus thermophilum H-6-12] gi|206739760|gb|ACI18818.1| YqeZ [Dictyoglomus thermophilum H-6-12] Length = 423 Score = 44.6 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 12/91 (13%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISRD 63 +KKI +L L+ ++ + +V I I+G IE +E I Sbjct: 1 MKKIFITIFLLFLILSSIYA---------QNQNVYIIPIKGTIELGLASFVE--RSIREH 49 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 +A A I + + GG A I I Sbjct: 50 PNAKAFIFEIDTFGGRVDAAIKIRDTILATP 80 >gi|161615359|ref|YP_001589324.1| hypothetical protein SPAB_03130 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197263975|ref|ZP_03164049.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198242637|ref|YP_002214402.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390046|ref|ZP_03216657.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205357179|ref|ZP_02345490.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205359635|ref|ZP_02830941.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224582286|ref|YP_002636084.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|161364723|gb|ABX68491.1| hypothetical protein SPAB_03130 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197242230|gb|EDY24850.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197937153|gb|ACH74486.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602491|gb|EDZ01037.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205323485|gb|EDZ11324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205344194|gb|EDZ30958.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224466813|gb|ACN44643.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713521|gb|EFZ05092.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326622151|gb|EGE28496.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 243 Score = 44.6 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 78 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 137 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 138 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 191 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 192 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAP 227 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 228 EAVEYGLVDSILT 240 >gi|157737934|ref|YP_001490618.1| ATP-dependent Clp protease proteolytic subunit [Arcobacter butzleri RM4018] gi|315637681|ref|ZP_07892886.1| ATP-dependent Clp protease proteolytic subunit [Arcobacter butzleri JV22] gi|167008646|sp|A8EVH5|CLPP_ARCB4 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|157699788|gb|ABV67948.1| ATP-dependent Clp protease, proteolytic subunit [Arcobacter butzleri RM4018] gi|315478028|gb|EFU68756.1| ATP-dependent Clp protease proteolytic subunit [Arcobacter butzleri JV22] Length = 194 Score = 44.6 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 56/193 (29%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D+ ++ ++ + +D + + ++SPGG +G +IF + +K Sbjct: 29 IIMLSGEINDAVASTVVAQLLFLEAEDPDKDIYLYINSPGGVVTSGMSIFDTMNYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S A + S + L Sbjct: 89 CTICIGQAASMGAFLLSSGAKGKRYSLPNSRIMIHQPLG--------------------- 127 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + +++ + +D + + Sbjct: 128 GARGQATDIQIQAKEIQR---------LKDTLNGILASQTGQDFATIEKDTDRDNFMSAE 178 Query: 217 EAKKVGLIDVVGG 229 EA GLID V Sbjct: 179 EACSYGLIDEVIT 191 >gi|153932099|ref|YP_001384751.1| putative Clp protease [Clostridium botulinum A str. ATCC 19397] gi|152928143|gb|ABS33643.1| putative Clp protease [Clostridium botulinum A str. ATCC 19397] Length = 252 Score = 44.6 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 72/219 (32%), Gaps = 37/219 (16%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRD----DSATALIVSLSSPGGS 79 W + ++ I G I + + D L + ++SPGGS Sbjct: 6 FWEVKNSTENENIGEAYIYGDIVSYKWDDTDTTAKSFKEDLDSLGDIDTLNIYINSPGGS 65 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + G+AI+ I++ K + V +AAS +I+ A N I + S++ Sbjct: 66 VFQGQAIYNIIKRHKAKIN--IHVDGVAASIASVIAMAGNTIFMPKNSMMMIHN------ 117 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + K +++ +++ L + Sbjct: 118 ------------PWTFAYGNAKELRKQADDLDKIRESLIEAY----------LSKAGDKL 155 Query: 200 PYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSL 237 + + + D W T E GL D + ++E+ S+ Sbjct: 156 SRETLIGIMDNETWLTAQECYDYGLCDELVEEKEIAASI 194 >gi|123443342|ref|YP_001007316.1| ATP-dependent Clp protease proteolytic subunit [Yersinia enterocolitica subsp. enterocolitica 8081] gi|2493738|sp|Q60107|CLPP_YEREN RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|166214722|sp|A1JNN2|CLPP_YERE8 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|1377852|gb|AAC45782.1| ClpP [Yersinia enterocolitica] gi|122090303|emb|CAL13169.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 207 Score = 44.6 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 62/196 (31%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + + ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 IIFLTGQVEDHMANLITAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + ++ Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L+++ ++ R + Sbjct: 156 ------------------------ILKVKSRMNELMAKHTGKSLEEIERDTERDRFLSAD 191 Query: 217 EAKKVGLIDVVGGQEE 232 EA + GL+D V + + Sbjct: 192 EAVEYGLVDSVFTRRD 207 >gi|328950648|ref|YP_004367983.1| protein of unknown function DUF107 [Marinithermus hydrothermalis DSM 14884] gi|328450972|gb|AEB11873.1| protein of unknown function DUF107 [Marinithermus hydrothermalis DSM 14884] Length = 422 Score = 44.6 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 75/289 (25%), Gaps = 63/289 (21%) Query: 14 MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-QELIERIERISRDDSATALIVS 72 +TL + F+ I I G+I + + +E+ + + A+ +++ Sbjct: 5 FAVFITLLGMAFA----------QTYVIPIEGEIGPALADFLEQSLERAEQEGASGVVLF 54 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 + +PGG A + I +A + S Sbjct: 55 VDTPGGRVDAAIRMSDTILST-----------------PIPTLAVVQNAFSAGALITLSA 97 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + P P + + Q + S R Sbjct: 98 DQIAMLP------------------GSEIGAALPITVLPGTQPQAADRKIISGLRGKFRA 139 Query: 193 VSESRNIPYDKTLVLSDGRI-------------WTGAEAKKVGLIDVVGGQEEVWQSLYA 239 V+E+R P + + D I +GA+A ++GL D + Sbjct: 140 VAEARGRPAELAEAMVDPDIEIEGLAAKGEPLTLSGAKAVELGLADFEASS---LRHALE 196 Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLE-DTIPLMKQTKVQGL 287 L S D LL + L+ + G Sbjct: 197 LAGFSSQVVRLDLPARVRVARFLTSPFIAPILLAVGVLGLVIEAFTPGF 245 >gi|288549991|ref|ZP_05968896.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterobacter cancerogenus ATCC 35316] gi|288316903|gb|EFC55841.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterobacter cancerogenus ATCC 35316] Length = 194 Score = 44.6 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 29 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 89 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L+++ ++ R + Sbjct: 143 ------------------------ILKVKARMNELMAQHTGQSLEQIERDTERDRFLSAP 178 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D V Sbjct: 179 EAVEYGLVDSVLT 191 >gi|74317695|ref|YP_315435.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thiobacillus denitrificans ATCC 25259] gi|90183186|sp|Q3SI98|CLPP_THIDA RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|74057190|gb|AAZ97630.1| peptidase S14, ClpP [Thiobacillus denitrificans ATCC 25259] Length = 212 Score = 44.6 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 25/195 (12%), Positives = 58/195 (29%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D+ ++ ++ + ++ + + ++SPGGS AG AI+ +Q +K Sbjct: 43 VIFLVGPVNDATANLIVAQMLFLESENPDKDIYLYINSPGGSVSAGLAIYDTMQFIKPDV 102 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A S V L + ++ Sbjct: 103 STLCIGQAASMGAFLLTAGAKGKRYCLPNSRVMIHQPLGGFQGQASDIEIHAKE------ 156 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + ++++ + + Sbjct: 157 ------------------------ILYLKARLNGMLAKHTGQSLEVIDRDTDRDNFMSAE 192 Query: 217 EAKKVGLIDVVGGQE 231 ++ K GL+D V Sbjct: 193 DSVKYGLVDKVLTSR 207 >gi|229823184|ref|ZP_04449253.1| hypothetical protein GCWU000282_00482 [Catonella morbi ATCC 51271] gi|229787350|gb|EEP23464.1| hypothetical protein GCWU000282_00482 [Catonella morbi ATCC 51271] Length = 198 Score = 44.6 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 56/193 (29%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G I+D+ +I ++ + D + + ++SPGGS AG AIF + + Sbjct: 29 IVMLSGPIDDAVANSVIAQLLFLDAQDPDKDIYLYINSPGGSVSAGLAIFDTMNFINADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A + V L ++ Sbjct: 89 QTIVIGMAASMGAFLLAAGEKGKRYALPNAEVMIHQPLGGAQGQATEIEIAAK------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + ++++E + Sbjct: 142 -----------------------HILKTRDTLNKILAERTGQTLKVIARDTDRDNYMSAE 178 Query: 217 EAKKVGLIDVVGG 229 EA K GL+D + Sbjct: 179 EAVKYGLVDAIMT 191 >gi|299143348|ref|ZP_07036428.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517833|gb|EFI41572.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 194 Score = 44.6 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + ++ ++ + +D + + ++SPGGS AG AI+ I+ +K Sbjct: 29 IIFLSGEINDVTADLVVAQLLFLEAEDQNKDIQIYINSPGGSVSAGFAIYDTIKYIKCDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A + + L + I + Sbjct: 89 STMVIGLAASMGAFLLAAGTKGKRFALPNADIMIHQPLGGAQGQASDIKIHAEKILEI-- 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +++SE P +K +D + + Sbjct: 147 ----------------------------RERINKILSEETGQPLEKVERDTDRDYYLSAK 178 Query: 217 EAKKVGLIDVV 227 EA + GLID V Sbjct: 179 EAVEYGLIDKV 189 >gi|161504375|ref|YP_001571487.1| hypothetical protein SARI_02486 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865722|gb|ABX22345.1| hypothetical protein SARI_02486 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 243 Score = 44.6 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 78 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 137 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 138 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 191 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 192 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAP 227 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 228 EAVEYGLVDSILT 240 >gi|307727567|ref|YP_003910780.1| hypothetical protein BC1003_5571 [Burkholderia sp. CCGE1003] gi|307588092|gb|ADN61489.1| protein of unknown function DUF107 [Burkholderia sp. CCGE1003] Length = 598 Score = 44.2 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 35/241 (14%), Positives = 71/241 (29%), Gaps = 23/241 (9%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGS 79 + S V I + G I + ++ ++R + D A ++ L +PGG Sbjct: 73 AAAVAKPPGDAYASNSVVVIPVSGAIGPASADFIVRSLQRAA-DGHAQLAVLQLDTPGGL 131 Query: 80 AYAGEAIFRAI---------------QKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 + I +AI + + I +AA A A+ I Sbjct: 132 DTSMRQIIKAILASPVPVATFIAPSGARAASAGTYIVYASHIAAMAPGTNLGAATPIQMG 191 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVV 182 G + P + + + + A +P + + Sbjct: 192 IGGTEPPGGGTPRLPGTGDRERQAPGAASATAPAASNASGTPAAPANLPLDTQSTELRKQ 251 Query: 183 DSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 ++R +++ R D + + T A+A ++D +V L L Sbjct: 252 VHDAAAYIRGLAQMRGRNADWAERAVREAVSLTAADALAQHVVD--VNARDVPDLLRQLD 309 Query: 242 V 242 Sbjct: 310 G 310 >gi|282850557|ref|ZP_06259936.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella parvula ATCC 17745] gi|294792182|ref|ZP_06757330.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella sp. 6_1_27] gi|294794047|ref|ZP_06759184.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella sp. 3_1_44] gi|282580050|gb|EFB85454.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella parvula ATCC 17745] gi|294455617|gb|EFG23989.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella sp. 3_1_44] gi|294457412|gb|EFG25774.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella sp. 6_1_27] Length = 197 Score = 44.2 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 58/195 (29%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D + +I ++ + +D + + ++SPGG AG AI+ +Q +K Sbjct: 28 IIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMQYIKPDV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A + + L ++ Sbjct: 88 STICVGSAASMGAVLLTAGTKGKRYALPHARIMIHQPLGGVQGQASEIEIHARE------ 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + +++ + + Sbjct: 142 ------------------------ILRMREELNGILASRSGQDIEVVARDTDRDNFMSAQ 177 Query: 217 EAKKVGLIDVVGGQE 231 +A + GLID V +E Sbjct: 178 DAVEYGLIDEVLTRE 192 >gi|242243098|ref|ZP_04797543.1| bacteriophage protease [Staphylococcus epidermidis W23144] gi|242233446|gb|EES35758.1| bacteriophage protease [Staphylococcus epidermidis W23144] Length = 248 Score = 44.2 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 67/206 (32%), Gaps = 40/206 (19%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQELIER-----IERISRDDSATALIVSLSSPGGSA 80 S E + HV I G I + E + + + A + + L+SPGG+A Sbjct: 10 FSSMKSETSDEHVLVI--SGAIGEGGYFYEGTSATDVRKALENVEAKTIRIKLNSPGGNA 67 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + G I+ ++ + ++ A++A + A +I+ ++++ Y Sbjct: 68 FDGLEIYNYLKDLDA-HVIVEVTALAASAASIIAMGADEVIMRTGSTMMIHNASTITYGN 126 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 L + + + + + E + Sbjct: 127 KDEMLK-------------------------------VYEYLAKIDTSIIDVYKEKTGLS 155 Query: 201 YDKTLVLSDGRIW-TGAEAKKVGLID 225 D+ + + W T +EA + G D Sbjct: 156 TDEIKEMLNNETWFTASEAVEKGFAD 181 >gi|242062408|ref|XP_002452493.1| hypothetical protein SORBIDRAFT_04g026880 [Sorghum bicolor] gi|241932324|gb|EES05469.1| hypothetical protein SORBIDRAFT_04g026880 [Sorghum bicolor] Length = 309 Score = 44.2 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 15/196 (7%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ + + ++SPGG AG AI+ +Q ++ Sbjct: 110 IVCIHGPIADDTASLVVAQLLFLESENPLKPVHLYINSPGGVVTAGLAIYDTMQYIRCPV 169 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV----LFQYPYVKPFLDKLGVSIK 153 + + + L + A A + V Q + ++ Sbjct: 170 TTLCIGQAASMGSLLLAAGAPGERRALPNARVMIHQPSGGAQGQATDIAIQAKEILKMRD 229 Query: 154 SVKSSPMKAEPSPFSEVNP-KAVQMMQDVVDSSYHWFVRLVSESRNIPYD--------KT 204 + K P ++ + D ++ + V E+R Sbjct: 230 RLNKIYQKHTRQPIDKIEQCMERDLFMDPEEARDWGLIDEVIENRPASLMPDGIGGGLDV 289 Query: 205 LVLSDGRIWTGAEAKK 220 L G G +A + Sbjct: 290 PSLGVGPGGRGRDAVE 305 >gi|56476917|ref|YP_158506.1| putative nodulation efficiency protein D [Aromatoleum aromaticum EbN1] gi|56312960|emb|CAI07605.1| putative nodulation efficiency protein D [Aromatoleum aromaticum EbN1] Length = 481 Score = 44.2 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 87/262 (33%), Gaps = 7/262 (2%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ-ELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 + E + V + + G I + + + R +R ++A +++ + +PGG + Sbjct: 25 AGGRAAEAPAARVVALRLDGVIGPATADFVSRGLARARSENAGLVVIEMDTPGGLDASMR 84 Query: 85 AIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I R I AASAG I AS+I A + +G+ + Sbjct: 85 VIIREILASPIPIATYVSPGGARAASAGTYILYASHIAAMAPATNLGAATPVAIGAPGGG 144 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD- 202 + + + M +++ ++R +++ R D Sbjct: 145 KPPAKDNDPATTRPGKDGDSADKAAAPKAPRGDAMMAKIENDAAAYLRSLAQLRGRDADF 204 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIKDWNPPK---NY 258 + + + EA K G+IDVV +++ + V + Sbjct: 205 AERAVREAASLSADEALKGGVIDVVASDLKDLLARIDGRTVKLDSGNVVQLATADAAVER 264 Query: 259 WFCDLKNLSISSLLEDTIPLMK 280 D +N +S L + L+ Sbjct: 265 IAPDWRNRILSILSNPQLALVL 286 >gi|15668307|ref|NP_247103.1| hypothetical protein MJ_0137 [Methanocaldococcus jannaschii DSM 2661] gi|2495823|sp|Q57601|Y137_METJA RecName: Full=Uncharacterized protein MJ0137 gi|1592268|gb|AAB98120.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 286 Score = 44.2 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 72/181 (39%), Gaps = 10/181 (5%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 IEDS+E++ I +D +I +PGG A I +A++ VI + Sbjct: 77 TIEDSEEILRAIRAAPKDKPIDLII---HTPGGLVLAATQIAKALKAHPAETRVIVPHYA 133 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 M+ G LI+ A++ I+ E +++G + + + +++ + + Sbjct: 134 MSG--GTLIALAADKIIMDENAVLGPVD----PQLGQYPAPSIVKAVEQKGADKADDQTL 187 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL-I 224 +++ KA+ +Q+ V + + T EAK++GL + Sbjct: 188 ILADIAKKAINQVQNFVYNLLKDKYGEEKAKELSKILTEGRWTHDYPITVEEAKELGLDV 247 Query: 225 D 225 D Sbjct: 248 D 248 >gi|56751593|ref|YP_172294.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus elongatus PCC 6301] gi|3023500|sp|O34125|CLPP2_SYNE7 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2; AltName: Full=Endopeptidase Clp 2 gi|67460442|sp|Q5N1P6|CLPP3_SYNP6 RecName: Full=ATP-dependent Clp protease proteolytic subunit 3; AltName: Full=Endopeptidase Clp 3 gi|15620530|gb|AAL03914.1|U30252_2 ClpP2 [Synechococcus elongatus PCC 7942] gi|2351823|gb|AAB68677.1| ATP-dependent Clp protease, proteolytic subunit [Synechococcus elongatus PCC 7942] gi|56686552|dbj|BAD79774.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus elongatus PCC 6301] Length = 240 Score = 44.2 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 31/182 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + ++ ++ + +D + + ++SPGGS AG AI+ +Q+V I + Sbjct: 75 ADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMG 134 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L A +A ++ + L ++ Sbjct: 135 AFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIE----------------------- 171 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228 + + L+++ P +K V +D + + EAK GLID V Sbjct: 172 -------IQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 224 Query: 229 GQ 230 + Sbjct: 225 TR 226 >gi|289810836|ref|ZP_06541465.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 50 Score = 44.2 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%) Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 R P ++ G W G +A + GL+D + +EV L Sbjct: 1 RMRPALDIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLME 43 >gi|224283328|ref|ZP_03646650.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium bifidum NCIMB 41171] gi|313140480|ref|ZP_07802673.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium bifidum NCIMB 41171] gi|313132990|gb|EFR50607.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium bifidum NCIMB 41171] Length = 239 Score = 44.2 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 30/181 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D + +++ ++SPGGS A AI+ +Q +K + + Sbjct: 83 TSADDIMAQLLVLESQDPSRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 142 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + A + + V + K Sbjct: 143 AAAILLAAGAKGKRLMLPNARVLIHQPAIDQGFGKA------------------------ 178 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226 +++ + W +++ +K + T EAK G++D Sbjct: 179 -----TEIEIQAKEMLRMREWLENTLAKHTGQDVEKIRKDIEVDTFLTAQEAKDYGIVDE 233 Query: 227 V 227 V Sbjct: 234 V 234 >gi|86741462|ref|YP_481862.1| ATP-dependent Clp protease proteolytic subunit [Frankia sp. CcI3] gi|86568324|gb|ABD12133.1| ATP-dependent Clp protease proteolytic subunit ClpP / ClpP2 peptidase. Serine peptidase. MEROPS family S14 [Frankia sp. CcI3] Length = 224 Score = 44.2 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 64/194 (32%), Gaps = 29/194 (14%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + +D + + ++SPGGS + AI+ +Q V+ I + Sbjct: 59 VSANDVMAQLLFLESEDPDRDISIYINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAAS 118 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + A E S + Q Sbjct: 119 AAAVLLAAGTPGKRFALENSRILIHQPSAQGEGQS------------------------- 153 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 + +Q + + + + R + +I++ EA++ GLID V Sbjct: 154 ---SDIEIQAREILRVRALQETMLARHTGRTET-EIRRDTERDKIFSADEAEEYGLIDEV 209 Query: 228 GGQEEVWQSLYALG 241 + + L A Sbjct: 210 IMSRKAARLLSARS 223 >gi|32266066|ref|NP_860098.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter hepaticus ATCC 51449] gi|60389734|sp|Q7VIN7|CLPP_HELHP RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|32262115|gb|AAP77164.1| endopeptidase ClpP [Helicobacter hepaticus ATCC 51449] Length = 196 Score = 44.2 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 59/193 (30%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + ++ ++ + +D + ++SPGG + +I+ + + + Sbjct: 30 IILLSGEINDHIASSIVAQLLFLEAEDPEKDINFYINSPGGVITSAFSIYDTMNYIHSDI 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I +A A L S + S + L ++ Sbjct: 90 STICIGQAASAGAFLLSSGTKGKRFSLPNSRIMIHQPLGGAQGQATDIE----------- 138 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + +++ + +K +G Sbjct: 139 -------------------IQAREILRLKKILNEIMAHNTGQKIEKITQDTERDFFMSGE 179 Query: 217 EAKKVGLIDVVGG 229 EAKK GL+D + Sbjct: 180 EAKKYGLVDEILT 192 >gi|312143235|ref|YP_003994681.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Halanaerobium sp. 'sapolanicus'] gi|311903886|gb|ADQ14327.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Halanaerobium sp. 'sapolanicus'] Length = 198 Score = 44.2 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 58/188 (30%), Gaps = 31/188 (16%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + +I ++ + D+ + + ++SPGGS A A++ +Q +K I +A Sbjct: 41 ANTVIAQLLFLEADNPDKDIYLYINSPGGSVTAALAMYDTMQYIKPDVVTIGMGQAASAG 100 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L + A A + V + + + Sbjct: 101 ALLLAAGAEGKRYALPYARVMIHQPAGGAQGKATEAEIHIKELMRI-------------- 146 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVG 228 +++SE +K + T EA G+ID V Sbjct: 147 ----------------RELLNQILSEHTGQDVEKIAQDVEKDYFMTAEEALDYGIIDEVI 190 Query: 229 GQEEVWQS 236 + E+ + Sbjct: 191 TRNELEEK 198 >gi|311064596|ref|YP_003971321.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium bifidum PRL2010] gi|310866915|gb|ADP36284.1| ClpP2 ATP-dependent Clp protease proteolytic subunit [Bifidobacterium bifidum PRL2010] Length = 239 Score = 44.2 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 30/181 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D + +++ ++SPGGS A AI+ +Q +K + + Sbjct: 83 TSADDIMAQLLVLESQDPSRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 142 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + A + + V + K Sbjct: 143 AAAILLAAGAKGKRLMLPNARVLIHQPAIDQGFGKA------------------------ 178 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226 +++ + W +++ +K + T EAK G++D Sbjct: 179 -----TEIEIQAKEMLRMREWLENTLAKHTGQDVEKIRKDIEVDTFLTAQEAKDYGIVDE 233 Query: 227 V 227 V Sbjct: 234 V 234 >gi|237744773|ref|ZP_04575254.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp. 7_1] gi|229432002|gb|EEO42214.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp. 7_1] Length = 367 Score = 44.2 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 78/233 (33%), Gaps = 44/233 (18%) Query: 30 HVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGS 79 +++ + + A I I G I S + ++ + + + + ++SPGG Sbjct: 11 EIKNLTENTAEIRIYGTITKWAWEDYGEVSSANFAKELQ---NYKNVSQINLRVNSPGGD 67 Query: 80 AYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 + AI+ ++ N + + +AASA + ++ IV +L L Sbjct: 68 VFEASAIYNLLKDFAKVNNIQITGYIDGLAASAASFLILCASKIVMGIGALFMIHNPLTY 127 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 L K + +VK S + + +S+ Sbjct: 128 AYGNSIELQKQIELLDTVKESILDIYCT-----------------------------KSK 158 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 + +++ + + EA + G ID + + +++ + + I Sbjct: 159 LSREEIAEKMNNEKWFRANEALEAGFIDEIVENDNSLENIKNISNELHIENFI 211 >gi|205351759|ref|YP_002225560.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271540|emb|CAR36358.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 207 Score = 44.2 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 102 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 156 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAP 191 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 192 EAVEYGLVDSILT 204 >gi|209546440|ref|YP_002278330.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539297|gb|ACI59230.1| Endopeptidase Clp [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 203 Score = 44.2 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 26/197 (13%), Positives = 67/197 (34%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++ D+ + ++ + ++ + + ++SPGG +G A++ ++ ++ Sbjct: 33 IVFLNGEVNDTVSALVCAQLLFLEAENPKKPIYLYINSPGGVVTSGLAMYDTMRYIRAPV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + + + + G G P + + + Sbjct: 93 --------------HTLCMGTARSMGSFLLMAGEPGERAALPNASILIHQPSGGFQG--- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216 +Q+ + + + RL +E Y+ + R T Sbjct: 136 -------------QATDMQIHAEEILKTKQRMTRLYAEHCGRSYEDFERAMDRDRFMTSQ 182 Query: 217 EAKKVGLIDVVGGQEEV 233 EA + GLID + EV Sbjct: 183 EALEWGLIDKIMQLREV 199 >gi|256810323|ref|YP_003127692.1| protein of unknown function DUF114 [Methanocaldococcus fervens AG86] gi|256793523|gb|ACV24192.1| protein of unknown function DUF114 [Methanocaldococcus fervens AG86] Length = 282 Score = 44.2 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 64/206 (31%), Gaps = 24/206 (11%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 IEDS+E++ I +D +I +PGG A I +A++ VI + Sbjct: 72 TIEDSEEILRAIRTAPKDKPIDLII---HTPGGLVLAATQIAKALKAHPAETRVIVPHYA 128 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 M + + A II+ L L QYP VK+ K Sbjct: 129 M-SGGTLIALSADKIIMDENAVLGPVDPQLGQYPAPS-----------IVKAVEQKGADK 176 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAK 219 + A + + + L + + + WT EAK Sbjct: 177 VDDQTLILADIAKKAINQVQNFVYTLLKDKYGKEKAKELAKILTEGKWTHDYPITVEEAK 236 Query: 220 KVGL-IDVVGGQEEVWQSLYALGVDQ 244 +GL +D E L L Sbjct: 237 NLGLDVDT--NVPEEVYELMELYKQP 260 >gi|297204822|ref|ZP_06922219.1| enoyl-CoA hydratase/isomerase [Streptomyces sviceus ATCC 29083] gi|197712537|gb|EDY56571.1| enoyl-CoA hydratase/isomerase [Streptomyces sviceus ATCC 29083] Length = 322 Score = 44.2 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 34/274 (12%), Positives = 81/274 (29%), Gaps = 36/274 (13%) Query: 38 VARIAIRGQ------IEDSQELIERIERISRDDSATALIVSLSSPG-------------- 77 V + + G ++ + +L ++R+ RD + A++ + + P Sbjct: 17 VLVVRVDGGPHQEFGVDLADKLDRLVKRVDRDPNVRAVVFTGAHPERFVSHAAVRWLQEE 76 Query: 78 --GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 GS G A+ ++ + + + + + + S + Sbjct: 77 GAGSPRVGRRGAAAVVRMAKHVDRSRLLGPVLRRTPMRGALQLERLHSTFLRMNRSGVLF 136 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 LG+ + + ++ + + + RL+ Sbjct: 137 VAALNGSA----LGLGAEFAWACDLRVMADGDFFIGQPEILLGIIPGGGGTQRLTRLIGT 192 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 R+ + +G+ +T EA G +D V Q++V L R Sbjct: 193 HRS-----LAAILEGKPFTPEEALANGAVDKVVTQDKVVAQAVELAEHFGKRSKDTVASA 247 Query: 256 KNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 K + S LED + + + + + Sbjct: 248 KRAVY-----FGGSMSLEDGLHVERAEFFTRILS 276 >gi|119025606|ref|YP_909451.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium adolescentis ATCC 15703] gi|118765190|dbj|BAF39369.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium adolescentis ATCC 15703] Length = 233 Score = 44.2 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 30/181 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D +++ ++SPGGS A AI+ +Q +K + + Sbjct: 77 TSADDIMAQLLVLESQDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 136 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + A + + V + K Sbjct: 137 AAAILLAAGAKGKRLMLPNARVLIHQPAIDQGFGKA------------------------ 172 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226 +++ + W +++ +K + T EAK+ G++D Sbjct: 173 -----TEIEIQAKEMLRMREWLENTLAKHTGRDIEKIRKDIEVDTFLTAQEAKEYGIVDE 227 Query: 227 V 227 V Sbjct: 228 V 228 >gi|289641547|ref|ZP_06473709.1| Endopeptidase Clp [Frankia symbiont of Datisca glomerata] gi|289508642|gb|EFD29579.1| Endopeptidase Clp [Frankia symbiont of Datisca glomerata] Length = 223 Score = 44.2 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 60/181 (33%), Gaps = 31/181 (17%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + +D + + ++SPGGS A AI+ +Q V+ I + Sbjct: 56 TSANDVMAQLLFLESEDPDRDISIYINSPGGSFTALTAIYDTMQFVRPDIQTICMGQAAS 115 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A++ L + E S + Q L+ Sbjct: 116 AASVLLAAGTPGKRFGLENSRILLHQPSGQGEGQSSDLE--------------------- 154 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226 + + R+ + ++ + +I + AEAK+ GLID Sbjct: 155 ---------IQAREILRMRALLERIYARHTGRSEEEIRRDIERDKILSAAEAKEYGLIDE 205 Query: 227 V 227 V Sbjct: 206 V 206 >gi|284006421|emb|CBA71657.1| ATP-dependent Clp protease proteolytic subunit [Arsenophonus nasoniae] Length = 209 Score = 44.2 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 44 IIFLTGQVEDHMANLVVAQMLFLEAENPDKDIHLYINSPGGVITAGMSIYDTMQFIKPDV 103 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + ++ I + Sbjct: 104 STICMGQACSMGAFLLTAGAKGKRYCLPNSRVMIHQPLGGFQGQASDIEIHAKEILKI-- 161 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L+++ + R T Sbjct: 162 ----------------------------KSRMNELMAKHTGKKIKEVENDTERDRFLTAE 193 Query: 217 EAKKVGLIDVV 227 EA GL+D + Sbjct: 194 EAVSYGLVDKI 204 >gi|149201013|ref|ZP_01877988.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp. TM1035] gi|149145346|gb|EDM33372.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp. TM1035] Length = 210 Score = 44.2 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 24/203 (11%), Positives = 57/203 (28%), Gaps = 33/203 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + + ++SPGG +G +I+ +Q +K + Sbjct: 38 IIFLSGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + S V Y Sbjct: 98 STLVVGQAASMGSLLLTAGEPGMRFSLPNSRVMVHQPSGGYQGQ---------------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + K L + Sbjct: 142 --------------ATDIMIHARETQKLKDRLNEIYVKHTGQTLKKVEEALERDNFMSPE 187 Query: 217 EAKKVGLIDVVGGQEEVWQSLYA 239 EAK GLID + + Sbjct: 188 EAKAWGLIDEIVANRDKGDEAAK 210 >gi|261837975|gb|ACX97741.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori 51] Length = 196 Score = 44.2 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I DS ++ ++ + +D + + ++SPGG +G +I+ + ++ Sbjct: 30 IVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A + S + L ++ + Sbjct: 90 STICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNE------ 143 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + +++++ ++ +D + + Sbjct: 144 ------------------------ILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAK 179 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 180 EAKEYGLIDKV 190 >gi|237707568|ref|ZP_04538049.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|332281588|ref|ZP_08394001.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Shigella sp. D9] gi|226898778|gb|EEH85037.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|332103940|gb|EGJ07286.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Shigella sp. D9] Length = 227 Score = 44.2 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 62 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 121 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 122 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 175 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 176 ------------------------ILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAP 211 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 212 EAVEYGLVDSILT 224 >gi|15645413|ref|NP_207587.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori 26695] gi|108563204|ref|YP_627520.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori HPAG1] gi|207108488|ref|ZP_03242650.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori HPKX_438_CA4C1] gi|2493736|sp|P56156|CLPP_HELPY RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|185177747|pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp gi|185177748|pdb|2ZL0|B Chain B, Crystal Structure Of H.Pylori Clpp gi|185177749|pdb|2ZL0|C Chain C, Crystal Structure Of H.Pylori Clpp gi|185177750|pdb|2ZL0|D Chain D, Crystal Structure Of H.Pylori Clpp gi|185177751|pdb|2ZL0|E Chain E, Crystal Structure Of H.Pylori Clpp gi|185177752|pdb|2ZL0|F Chain F, Crystal Structure Of H.Pylori Clpp gi|185177753|pdb|2ZL0|G Chain G, Crystal Structure Of H.Pylori Clpp gi|185177754|pdb|2ZL0|H Chain H, Crystal Structure Of H.Pylori Clpp gi|185177755|pdb|2ZL0|I Chain I, Crystal Structure Of H.Pylori Clpp gi|185177756|pdb|2ZL0|J Chain J, Crystal Structure Of H.Pylori Clpp gi|185177757|pdb|2ZL0|K Chain K, Crystal Structure Of H.Pylori Clpp gi|185177758|pdb|2ZL0|L Chain L, Crystal Structure Of H.Pylori Clpp gi|185177759|pdb|2ZL0|M Chain M, Crystal Structure Of H.Pylori Clpp gi|185177760|pdb|2ZL0|N Chain N, Crystal Structure Of H.Pylori Clpp gi|185177761|pdb|2ZL2|A Chain A, Crystal Structure Of H.Pylori Clpp In Complex With The Peptide Nvlgftq gi|185177762|pdb|2ZL2|B Chain B, Crystal Structure Of H.Pylori Clpp In Complex With The Peptide Nvlgftq gi|185177763|pdb|2ZL2|C Chain C, Crystal Structure Of H.Pylori Clpp In Complex With The Peptide Nvlgftq gi|185177764|pdb|2ZL2|D Chain D, Crystal Structure Of H.Pylori Clpp In Complex With The Peptide Nvlgftq gi|185177765|pdb|2ZL2|E Chain E, Crystal Structure Of H.Pylori Clpp In Complex With The Peptide Nvlgftq gi|185177766|pdb|2ZL2|F Chain F, Crystal Structure Of H.Pylori Clpp In Complex With The Peptide Nvlgftq gi|185177767|pdb|2ZL2|G Chain G, Crystal Structure Of H.Pylori Clpp In Complex With The Peptide Nvlgftq gi|185177768|pdb|2ZL2|H Chain H, Crystal Structure Of H.Pylori Clpp In Complex With The Peptide Nvlgftq gi|185177769|pdb|2ZL2|I Chain I, Crystal Structure Of H.Pylori Clpp In Complex With The Peptide Nvlgftq gi|185177770|pdb|2ZL2|J Chain J, Crystal Structure Of H.Pylori Clpp In Complex With The Peptide Nvlgftq gi|185177771|pdb|2ZL2|K Chain K, Crystal Structure Of H.Pylori Clpp In Complex With The Peptide Nvlgftq gi|185177772|pdb|2ZL2|L Chain L, Crystal Structure Of H.Pylori Clpp In Complex With The Peptide Nvlgftq gi|185177773|pdb|2ZL2|M Chain M, Crystal Structure Of H.Pylori Clpp In Complex With The Peptide Nvlgftq gi|185177774|pdb|2ZL2|N Chain N, Crystal Structure Of H.Pylori Clpp In Complex With The Peptide Nvlgftq gi|2313923|gb|AAD07842.1| ATP-dependent clp protease proteolytic component (clpP) [Helicobacter pylori 26695] gi|107836977|gb|ABF84846.1| ATP-dependent clp protease proteolytic component [Helicobacter pylori HPAG1] Length = 196 Score = 44.2 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I DS ++ ++ + +D + + ++SPGG +G +I+ + ++ Sbjct: 30 IVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A + S + L ++ + Sbjct: 90 STICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNE------ 143 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + +++++ ++ +D + + Sbjct: 144 ------------------------ILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAK 179 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 180 EAKEYGLIDKV 190 >gi|238926240|ref|ZP_04658000.1| endopeptidase Clp [Selenomonas flueggei ATCC 43531] gi|238885920|gb|EEQ49558.1| endopeptidase Clp [Selenomonas flueggei ATCC 43531] Length = 197 Score = 44.2 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+DS ++ ++ + +D + + ++SPGG AG AI+ +Q +K Sbjct: 24 IIFLGGPIDDSVANVIVAQMLFLESEDPDKDIHLYINSPGGVVTAGLAIYDTMQYIKPDV 83 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + + L Sbjct: 84 STICVGQAASMGSILLTAGAKGKRYALPHARIMIHQPLGGAQGQST-------------- 129 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 +Q+ + +++ K + Sbjct: 130 ----------------DIQIQAKEILRLREVGNEILARHTGQDTAKINIDTERDNFMSAE 173 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 174 EAKEYGLIDEV 184 >gi|157164595|ref|YP_001465991.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter concisus 13826] gi|112801723|gb|EAT99067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter concisus 13826] Length = 196 Score = 44.2 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+IED + ++ ++ + +D + + ++SPGG +G +I+ + +K Sbjct: 30 IVMLSGEIEDGMAASIVAQLLFLEAEDPDKDIYLYINSPGGVITSGFSIYDTMNYIKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A A S + L ++ Sbjct: 90 CTICIGQAASMGAFLLSCGAPGKRYALPNSRIMIHQPLGGARGQATDIE----------- 138 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216 + + +++++ K + A Sbjct: 139 -------------------IQAREILRLKEILNGILAKNTGQKLSKIVKDTERDFFMSSA 179 Query: 217 EAKKVGLIDVV 227 EAK+ GL+D + Sbjct: 180 EAKEYGLVDKI 190 >gi|253796908|gb|ACT35709.1| capsid protein [Wolbachia phage WO] Length = 133 Score = 44.2 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P + ++++ +Q VD Y FV+L++ +RN+ G + G +A ++GL D Sbjct: 1 PHEPMTSESLESLQKEVDRLYEMFVQLIARNRNLSIQAIKSTEAGLYF-GEKAVEIGLAD 59 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 V E + + V + ++ + N + Sbjct: 60 GVTTFFEFINNHKSRSVSMTTDELIEENYRREILE 94 >gi|116333303|ref|YP_794830.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus brevis ATCC 367] gi|122270009|sp|Q03SM3|CLPP_LACBA RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|116098650|gb|ABJ63799.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lactobacillus brevis ATCC 367] Length = 198 Score = 44.2 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IED +I ++ + DS + + ++SPGG +G AI+ + +++ Sbjct: 29 IIMLSGPIEDDMANAIIAQLLFLDAQDSTKDISLYINSPGGVVSSGLAIYDTMNFIQSDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 IT + ++ S A + V + ++ Sbjct: 89 QTITLGMAASMASVLASSGTKGKRFALPHAQVMIHQPSGGAQGQQTEIEIAARE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + ++++E+ P ++ + Sbjct: 143 ------------------------ILKTRELINKILAENSGQPIERLNQDTERDNYLSAQ 178 Query: 217 EAKKVGLIDVVGG 229 EA GLID + Sbjct: 179 EAVDYGLIDHIMT 191 >gi|153209299|ref|ZP_01947334.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coxiella burnetii 'MSU Goat Q177'] gi|154706302|ref|YP_001424146.1| ATP-dependent Clp protease proteolytic subunit [Coxiella burnetii Dugway 5J108-111] gi|165924012|ref|ZP_02219844.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coxiella burnetii RSA 334] gi|212212797|ref|YP_002303733.1| ATP-dependent Clp protease proteolytic subunit [Coxiella burnetii CbuG_Q212] gi|212219038|ref|YP_002305825.1| ATP-dependent Clp protease proteolytic subunit [Coxiella burnetii CbuK_Q154] gi|189082453|sp|A9KDS6|CLPP_COXBN RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|226706447|sp|B6J8W4|CLPP_COXB1 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|226706448|sp|B6J0W0|CLPP_COXB2 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|120575415|gb|EAX32039.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coxiella burnetii 'MSU Goat Q177'] gi|154355588|gb|ABS77050.1| ATP-dependent endopeptidase clp proteolytic subunit [Coxiella burnetii Dugway 5J108-111] gi|165916535|gb|EDR35139.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coxiella burnetii RSA 334] gi|212011207|gb|ACJ18588.1| ATP-dependent endopeptidase clp proteolytic subunit [Coxiella burnetii CbuG_Q212] gi|212013300|gb|ACJ20680.1| ATP-dependent endopeptidase clp proteolytic subunit [Coxiella burnetii CbuK_Q154] Length = 195 Score = 44.2 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 65/196 (33%), Gaps = 35/196 (17%) Query: 40 RIAIRGQIED---SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 I + GQ+ED + + + + S + + + + ++SPGG+ + AI+ +Q VK Sbjct: 30 VIFLVGQVEDHMANLAIAQMLFLESENPN-KDINLYINSPGGAVTSAMAIYDTMQFVKPD 88 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 + +A A L A S V VL Y + + V Sbjct: 89 VRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVMIHQVLGGYQGQGTDIQIHAKQTQRVS 148 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215 +++++ ++ ++ + T Sbjct: 149 ------------------------------DQLNQILAKHTGKDIERVEKDTNRDYFLTP 178 Query: 216 AEAKKVGLIDVVGGQE 231 EA + GLID + + Sbjct: 179 EEAVEYGLIDSIFTER 194 >gi|307245367|ref|ZP_07527455.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254322|ref|ZP_07536160.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258780|ref|ZP_07540512.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853708|gb|EFM85925.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862621|gb|EFM94577.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867131|gb|EFM98987.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 652 Score = 44.2 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 71/219 (32%), Gaps = 37/219 (16%) Query: 30 HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 ++ + A I+I +I +Q+ + ++ + + + + + SPGG + G A Sbjct: 5 KIQAKANDTAEISIYDEIGFWGVTAQQFAKDLKALGN--NLKQINLHIHSPGGDVFDGIA 62 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+ ++ K + +AAS +I+ A N I+ E +++ Sbjct: 63 IYNLLKNHPANKT--VYIDGLAASMASVIAMAGNEIIMPENAMMMIH------------- 107 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 ++ + + + V+++ D Sbjct: 108 -----KPWGIQGGDA-----------DDMRKYADLLDKVESTLIMAYVAKTGKSESDLAE 151 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 +L TG E + G D + + + ++ Sbjct: 152 MLKVETWLTGKECVEQGFADKLADPLVAMACIQSKKLED 190 >gi|91228617|ref|ZP_01262535.1| ATP-dependent Clp protease proteolytic subunit [Vibrio alginolyticus 12G01] gi|254229904|ref|ZP_04923307.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio sp. Ex25] gi|262394815|ref|YP_003286669.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. Ex25] gi|269965580|ref|ZP_06179694.1| ATP-dependent Clp protease proteolytic subunit [Vibrio alginolyticus 40B] gi|91187849|gb|EAS74163.1| ATP-dependent Clp protease proteolytic subunit [Vibrio alginolyticus 12G01] gi|151937540|gb|EDN56395.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio sp. Ex25] gi|262338409|gb|ACY52204.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. Ex25] gi|269829805|gb|EEZ84040.1| ATP-dependent Clp protease proteolytic subunit [Vibrio alginolyticus 40B] Length = 208 Score = 44.2 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + + I ++K Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQ 161 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K L++E P + + Sbjct: 162 KLNK------------------------------LLAEHTGQPLEVIERDTDRDNFMSSE 191 Query: 217 EAKKVGLIDVV 227 +A + G++D V Sbjct: 192 QAVEYGIVDAV 202 >gi|332686182|ref|YP_004455956.1| ATP-dependent Clp protease proteolytic subunit [Melissococcus plutonius ATCC 35311] gi|332370191|dbj|BAK21147.1| ATP-dependent Clp protease proteolytic subunit [Melissococcus plutonius ATCC 35311] Length = 198 Score = 44.2 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 64/192 (33%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G I+D S +I ++ + DS + + ++SPGGS AG AIF + VK Sbjct: 29 IVMLSGPIDDNVSNSVIAQLLFLDAQDSEKDIYLYINSPGGSVSAGLAIFDTMNFVKADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A + + L ++ Sbjct: 89 QTIVLGIAASMGSFLLTAGQKGKRFALPNAEIMIHQPLGGAQGQATEIEIAAK------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + ++ +++SE P + +D + T Sbjct: 142 -----------------------HILNTRERLNKILSERTGQPIEVIEKDTDRDNFMTAE 178 Query: 217 EAKKVGLIDVVG 228 EAK GLID V Sbjct: 179 EAKAYGLIDDVM 190 >gi|284030228|ref|YP_003380159.1| endopeptidase Clp [Kribbella flavida DSM 17836] gi|283809521|gb|ADB31360.1| Endopeptidase Clp [Kribbella flavida DSM 17836] Length = 207 Score = 44.2 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 59/180 (32%), Gaps = 31/180 (17%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 ++ + ++ ++ +D + + ++SPGGS AG AI+ +Q + N + + Sbjct: 44 NANAICAQMLLLNAEDPNKDIWLYINSPGGSVDAGMAIYDTMQYISNDVATVGMGLAASM 103 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 L + A N A + + Sbjct: 104 GQFLLCAGAKNKRFALPHARIMMHQPSGGMGG---------------------------- 135 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVV 227 +++ +L++E ++ +D R +T +AK+ G ID V Sbjct: 136 --TASDIKIQAQQSLHIKAQLFKLIAEHTGQALEQVENDADRDRWFTADQAKEYGFIDHV 193 >gi|154487068|ref|ZP_02028475.1| hypothetical protein BIFADO_00906 [Bifidobacterium adolescentis L2-32] gi|154084931|gb|EDN83976.1| hypothetical protein BIFADO_00906 [Bifidobacterium adolescentis L2-32] Length = 233 Score = 44.2 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 30/181 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D +++ ++SPGGS A AI+ +Q +K + + Sbjct: 77 TSADDIMAQLLVLESQDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 136 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + A + + V + K Sbjct: 137 AAAILLAAGAKGKRLMLPNARVLIHQPAIDQGFGKA------------------------ 172 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226 +++ + W +++ +K + T EAK+ G++D Sbjct: 173 -----TEIEIQAKEMLRMREWLENTLAKHTGRDIEKIRKDIEVDTFLTAQEAKEYGIVDE 227 Query: 227 V 227 V Sbjct: 228 V 228 >gi|194471774|ref|ZP_03077758.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197249758|ref|YP_002145429.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205357584|ref|ZP_02571531.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205358475|ref|ZP_02656494.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205358901|ref|ZP_02665206.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|289827300|ref|ZP_06545983.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|194458138|gb|EDX46977.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197213461|gb|ACH50858.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205331008|gb|EDZ17772.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334088|gb|EDZ20852.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340153|gb|EDZ26917.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|321226026|gb|EFX51077.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 243 Score = 44.2 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 78 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 137 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 138 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 191 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 192 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAP 227 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 228 EAVEYGLVDSILT 240 >gi|332663509|ref|YP_004446297.1| ATP-dependent Clp protease proteolytic subunit [Haliscomenobacter hydrossis DSM 1100] gi|332332323|gb|AEE49424.1| ATP-dependent Clp protease proteolytic subunit [Haliscomenobacter hydrossis DSM 1100] Length = 215 Score = 44.2 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 61/198 (30%), Gaps = 32/198 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D + ++ ++ +S D + + + SPGG Y+G AI+ ++ + N Sbjct: 32 IIFLSGEVNDVMASIVVAQLLYLSSIDPKRQINMYIQSPGGVVYSGMAIYDTMKMISNPV 91 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 ++ + L S A S + Sbjct: 92 STVSMGFTGSMGTFLLSSGTPGKRYALAHSTIHMHPTGGGTRGY---------------- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 ++ F + +S + + R E Sbjct: 136 -------------TEDVRIATREQERLQAQIFHLMGKQSGHSRKEIEDYFLRDRFLNAQE 182 Query: 218 AKKVGLIDVV-GGQEEVW 234 A++ GL+D + G +++ Sbjct: 183 AREFGLVDEILGDIQDLV 200 >gi|311280666|ref|YP_003942897.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterobacter cloacae SCF1] gi|308749861|gb|ADO49613.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterobacter cloacae SCF1] Length = 207 Score = 44.2 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 102 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L+++ + R + Sbjct: 156 ------------------------ILKVKARMNELMAQHTGQSLAQIESDTERDRFLSAP 191 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 192 EAVEYGLVDSILT 204 >gi|291085757|ref|ZP_06571180.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Citrobacter youngae ATCC 29220] gi|291069764|gb|EFE07873.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Citrobacter youngae ATCC 29220] Length = 243 Score = 44.2 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 78 VIFMTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 137 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 138 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 191 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + + Sbjct: 192 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAS 227 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 228 EAVEYGLVDSILT 240 >gi|262192152|ref|ZP_06050312.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae CT 5369-93] gi|262031941|gb|EEY50519.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae CT 5369-93] Length = 167 Score = 44.2 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 33/190 (17%) Query: 41 IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 2 IFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVS 61 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 + + A L A S V L + + + + + + Sbjct: 62 TVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLG---GFQGQASDIQIHAQEILTI 118 Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAE 217 K RL++E P + + + Sbjct: 119 KNK---------------------------LNRLLAEHTGQPIEVIERDTDRDNFMSADQ 151 Query: 218 AKKVGLIDVV 227 A + GL+D V Sbjct: 152 AVEYGLVDAV 161 >gi|301311154|ref|ZP_07217082.1| serine protease, ClpP class [Bacteroides sp. 20_3] gi|300830728|gb|EFK61370.1| serine protease, ClpP class [Bacteroides sp. 20_3] Length = 459 Score = 44.2 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALI 70 ++ L + ++ + I I+ +I+++ + + + SA A++ Sbjct: 4 LLTILTAIVLILAISLQSEAKEKSLIYTIDIKKEIDNTTWIYLHNGLSEAKQL-SADAIL 62 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + +++ GG + +++ AI + + PV + AASAG LIS A I + + +G Sbjct: 63 LHMNTYGGLLESADSMRTAI--LYSPIPVYVFIDNNAASAGALISIACKKIYMRKGANIG 120 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 + V+ Q P + + ++ + + + + Sbjct: 121 AATVVNQTGAALPDKYQSYMRSMIRSTAEAQGKDTLIQNGDTIYKWKRD----------- 169 Query: 191 RLVSESRNIPYDKTLVLSDGR---IWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSI 246 L++E+ L D T EA K G D + ++V Sbjct: 170 PLIAEAMVDDRVIVPNLIDSGKVLTLTYQEALKWGYCDGIAESPDQVITEYIG----CKD 225 Query: 247 RKIKDWNPPKNYWFCDLKNLSIS 269 +IK + P WF ++K +S Sbjct: 226 YEIKSYEP---SWFDNVKGFFMS 245 >gi|288555734|ref|YP_003427669.1| hypothetical protein BpOF4_13630 [Bacillus pseudofirmus OF4] gi|288546894|gb|ADC50777.1| hypothetical protein BpOF4_13630 [Bacillus pseudofirmus OF4] Length = 446 Score = 44.2 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 65/136 (47%), Gaps = 3/136 (2%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIER 59 M + I +++ +++ + + F +S + V I + +E ++R + Sbjct: 1 MNRIRLNISLLFILCAMLLIPLQSFVYSETNTSDDTVVYYIPVEQTVERGLAAFMQRSFQ 60 Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119 + D+ A +++ + +PGG+ A I R +Q P+I V + A SAG I+ ++ Sbjct: 61 SAADEGADYIVLEIHTPGGAVDAAGEIARLMQ--NTDIPIIAFVTKEAISAGAYIALNAD 118 Query: 120 IIVAAETSLVGSIGVL 135 IV A + +G+ GV+ Sbjct: 119 EIVMAPGTTMGAAGVI 134 >gi|149194680|ref|ZP_01871775.1| ATP-dependent Clp protease proteolytic subunit [Caminibacter mediatlanticus TB-2] gi|149135103|gb|EDM23584.1| ATP-dependent Clp protease proteolytic subunit [Caminibacter mediatlanticus TB-2] Length = 196 Score = 44.2 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I ++G+I D ++ ++ + ++ + + ++SPGG +G AI+ + +K Sbjct: 30 IIMLQGEINDHTASLIVAQLLFLEAENPEKDIYLYINSPGGVVTSGFAIYDTMNYIKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S A A + + L ++ Sbjct: 90 VTICMGQAASMGAFLLSSGAKGKRFALPHARIMIHQPLGGAQGQATDIEIHAKE------ 143 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + ++++E+ K ++ + + Sbjct: 144 ------------------------ILRMKKELNKILAENTGQSVRKIEKDTERDFFMSAE 179 Query: 217 EAKKVGLIDVV 227 EA K GLID V Sbjct: 180 EAMKYGLIDKV 190 >gi|320535322|ref|ZP_08035441.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema phagedenis F0421] gi|320147822|gb|EFW39319.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema phagedenis F0421] Length = 203 Score = 44.2 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 63/195 (32%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + ++ ++ + + + + ++SPGGS AG AI+ +Q ++ + Sbjct: 34 IIFVDGEINDTVADLIVAQLLFLESQNPDKDISLYINSPGGSVTAGLAIYDTMQHIRPKI 93 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L ++ A +S V + I +K Sbjct: 94 QTICLGQAASMAAVLLAGGSAGKRFALPSSRVMIHQPWGGVQGQASDISIQAKEIIRLKK 153 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 +K +E + + + Sbjct: 154 LTIKYF------------------------------AEHTGKSEKEVADDMERDFFMSAE 183 Query: 217 EAKKVGLIDVVGGQE 231 EAK G++D V + Sbjct: 184 EAKAYGIVDTVMNRR 198 >gi|239638102|ref|ZP_04679061.1| serine protease [Staphylococcus warneri L37603] gi|239596385|gb|EEQ78923.1| serine protease [Staphylococcus warneri L37603] Length = 258 Score = 44.2 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 76/241 (31%), Gaps = 37/241 (15%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 I G Q + E+++ ++V+++S GG ++G I+ +++ Sbjct: 16 TIEGMTISPQTVREQLKA---MGDVDEVVVNINSNGGDVFSGVTIYNMLRRFDA------ 66 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 I+ + + A+ S++ G P + +V + Sbjct: 67 -----------HITVNVDGLAASIASVIAMAGDTINMPGNAMLMVHNAW---TVNEGDAR 112 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220 + ++ + VD + L D W T EAKK Sbjct: 113 SFKKRAEDLERINSVVFNSYVDKNPDIDHAL-----------LQDYMDEETWLTAKEAKK 161 Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 +GLID + + + + + + ++ S +ED + ++ Sbjct: 162 LGLIDNI-TENSRVAAATTSTILGGETFMTRYR-NEDSQQPGQPKESSEITVEDVMDKLE 219 Query: 281 Q 281 + Sbjct: 220 E 220 >gi|315924138|ref|ZP_07920364.1| ATP-dependent Clp protease, protease subunit [Pseudoramibacter alactolyticus ATCC 23263] gi|315622540|gb|EFV02495.1| ATP-dependent Clp protease, protease subunit [Pseudoramibacter alactolyticus ATCC 23263] Length = 194 Score = 44.2 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 62/196 (31%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I D ++ ++ + ++ + + ++SPGGS AG AI + +K Sbjct: 29 IVFLDGEITDETASLVVAQLVFLEAENPDEDIFMYINSPGGSVTAGFAIMDTMNFIKCDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A A + + L Sbjct: 89 STLCYGMAASMGAFLLAAGAKGKRQALPNAEIMIHQPLGGAQGQSS-------------- 134 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216 V++ + + R++SE+ ++ + Sbjct: 135 ----------------DVEIHARHLLETKEKLNRILSENSGQSFETIVKDTDRDHFMSAE 178 Query: 217 EAKKVGLIDVVGGQEE 232 EAK GLID V + Sbjct: 179 EAKTYGLIDQVITSRD 194 >gi|310287698|ref|YP_003938956.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium bifidum S17] gi|309251634|gb|ADO53382.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium bifidum S17] Length = 239 Score = 44.2 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 30/181 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D + +++ ++SPGGS A AI+ +Q +K + + Sbjct: 83 TSADDIMAQLLVLESQDPSRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 142 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + A + + V + K Sbjct: 143 AAAILLAAGAKGKRLMLPNARVLIHQPAIDQGFGKA------------------------ 178 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226 +++ + W +++ +K + T EAK G++D Sbjct: 179 -----TEIEIQAKEMLRMREWLENTLAKHTGQDVEKIRKDIEVDTFLTAQEAKDYGIVDE 233 Query: 227 V 227 V Sbjct: 234 V 234 >gi|185177785|pdb|2ZL3|A Chain A, Crystal Structure Of H.Pylori Clpp S99a gi|185177786|pdb|2ZL3|B Chain B, Crystal Structure Of H.Pylori Clpp S99a gi|185177787|pdb|2ZL3|C Chain C, Crystal Structure Of H.Pylori Clpp S99a gi|185177788|pdb|2ZL3|D Chain D, Crystal Structure Of H.Pylori Clpp S99a gi|185177789|pdb|2ZL3|E Chain E, Crystal Structure Of H.Pylori Clpp S99a gi|185177790|pdb|2ZL3|F Chain F, Crystal Structure Of H.Pylori Clpp S99a gi|185177791|pdb|2ZL3|G Chain G, Crystal Structure Of H.Pylori Clpp S99a gi|185177792|pdb|2ZL3|H Chain H, Crystal Structure Of H.Pylori Clpp S99a gi|185177793|pdb|2ZL3|I Chain I, Crystal Structure Of H.Pylori Clpp S99a gi|185177794|pdb|2ZL3|J Chain J, Crystal Structure Of H.Pylori Clpp S99a gi|185177795|pdb|2ZL3|K Chain K, Crystal Structure Of H.Pylori Clpp S99a gi|185177796|pdb|2ZL3|L Chain L, Crystal Structure Of H.Pylori Clpp S99a gi|185177797|pdb|2ZL3|M Chain M, Crystal Structure Of H.Pylori Clpp S99a gi|185177798|pdb|2ZL3|N Chain N, Crystal Structure Of H.Pylori Clpp S99a gi|185177799|pdb|2ZL4|A Chain A, Crystal Structure Of H.Pylori Clpp S99a In Complex With The Peptide Aaaa gi|185177801|pdb|2ZL4|B Chain B, Crystal Structure Of H.Pylori Clpp S99a In Complex With The Peptide Aaaa gi|185177803|pdb|2ZL4|C Chain C, Crystal Structure Of H.Pylori Clpp S99a In Complex With The Peptide Aaaa gi|185177805|pdb|2ZL4|D Chain D, Crystal Structure Of H.Pylori Clpp S99a In Complex With The Peptide Aaaa gi|185177807|pdb|2ZL4|E Chain E, Crystal Structure Of H.Pylori Clpp S99a In Complex With The Peptide Aaaa gi|185177809|pdb|2ZL4|F Chain F, Crystal Structure Of H.Pylori Clpp S99a In Complex With The Peptide Aaaa gi|185177811|pdb|2ZL4|G Chain G, Crystal Structure Of H.Pylori Clpp S99a In Complex With The Peptide Aaaa gi|185177813|pdb|2ZL4|H Chain H, Crystal Structure Of H.Pylori Clpp S99a In Complex With The Peptide Aaaa gi|185177815|pdb|2ZL4|I Chain I, Crystal Structure Of H.Pylori Clpp S99a In Complex With The Peptide Aaaa gi|185177817|pdb|2ZL4|J Chain J, Crystal Structure Of H.Pylori Clpp S99a In Complex With The Peptide Aaaa gi|185177819|pdb|2ZL4|K Chain K, Crystal Structure Of H.Pylori Clpp S99a In Complex With The Peptide Aaaa gi|185177821|pdb|2ZL4|L Chain L, Crystal Structure Of H.Pylori Clpp S99a In Complex With The Peptide Aaaa gi|185177823|pdb|2ZL4|M Chain M, Crystal Structure Of H.Pylori Clpp S99a In Complex With The Peptide Aaaa gi|185177825|pdb|2ZL4|N Chain N, Crystal Structure Of H.Pylori Clpp S99a In Complex With The Peptide Aaaa Length = 196 Score = 44.2 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I DS ++ ++ + +D + + ++SPGG +G +I+ + ++ Sbjct: 30 IVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I A A L A + S + L ++ + Sbjct: 90 STICIGQAAAMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNE------ 143 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + +++++ ++ +D + + Sbjct: 144 ------------------------ILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAK 179 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 180 EAKEYGLIDKV 190 >gi|152968972|ref|YP_001334081.1| ATP-dependent Clp protease proteolytic subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262042473|ref|ZP_06015632.1| ATP-dependent Clp protease [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330011533|ref|ZP_08307119.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Klebsiella sp. MS 92-3] gi|150953821|gb|ABR75851.1| ATP-dependent Clp protease proteolytic subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259040177|gb|EEW41289.1| ATP-dependent Clp protease [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328534150|gb|EGF60785.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Klebsiella sp. MS 92-3] Length = 194 Score = 44.2 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 29 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 89 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + A Sbjct: 143 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAA 178 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 179 EAVEYGLVDSILT 191 >gi|15895898|ref|NP_349247.1| ATP-dependent Clp protease proteolytic subunit [Clostridium acetobutylicum ATCC 824] gi|18202304|sp|P58276|CLPP_CLOAB RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|15025667|gb|AAK80587.1|AE007761_6 Protease subunits of ATP-dependent protease, ClpP [Clostridium acetobutylicum ATCC 824] gi|325510050|gb|ADZ21686.1| ATP-dependent Clp protease proteolytic subunit [Clostridium acetobutylicum EA 2018] Length = 193 Score = 44.2 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 31/178 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGGS +G AI+ +Q VK I + + Sbjct: 44 VVAQLLFLESEDPDKDIYLYINSPGGSITSGMAIYDTMQYVKPDVSTICIGMAASMGSFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A A S + L K +G+ + + K Sbjct: 104 LTAGAPGKRFALPNSEIMIHQPLG---GFKGQATDIGIHAQRILEIKKK----------- 149 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGG 229 + SE P + +D + + EAK+ GLID V Sbjct: 150 ----------------LNSIYSERTGKPIEVIEKDTDRDHFLSAEEAKEYGLIDEVIT 191 >gi|332160749|ref|YP_004297326.1| ATP-dependent Clp protease proteolytic subunit [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604628|emb|CBY26126.1| ATP-dependent Clp protease proteolytic subunit [Yersinia enterocolitica subsp. palearctica Y11] gi|325664979|gb|ADZ41623.1| ATP-dependent Clp protease proteolytic subunit [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859950|emb|CBX70279.1| ATP-dependent Clp protease proteolytic subunit [Yersinia enterocolitica W22703] Length = 207 Score = 44.2 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 62/196 (31%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + + ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 IIFLTGQVEDHMANLITAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + ++ Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L+++ ++ R + Sbjct: 156 ------------------------ILKVKSRMNELMAKHTGKSLEEIERDTERDRFLSAD 191 Query: 217 EAKKVGLIDVVGGQEE 232 EA K GL+D V + + Sbjct: 192 EAVKYGLVDSVFTRRD 207 >gi|254779232|ref|YP_003057337.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori B38] gi|254001143|emb|CAX29101.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) [Helicobacter pylori B38] Length = 196 Score = 44.2 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I DS ++ ++ + +D + + ++SPGG +G +I+ + ++ Sbjct: 30 IVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A + S + L ++ + Sbjct: 90 STICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNE------ 143 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + +++++ ++ +D + + Sbjct: 144 ------------------------ILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAK 179 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 180 EAKEYGLIDKV 190 >gi|319763664|ref|YP_004127601.1| ATP-dependent clp protease, proteolytic subunit clpp [Alicycliphilus denitrificans BC] gi|330824071|ref|YP_004387374.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alicycliphilus denitrificans K601] gi|317118225|gb|ADV00714.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alicycliphilus denitrificans BC] gi|329309443|gb|AEB83858.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alicycliphilus denitrificans K601] Length = 202 Score = 44.2 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 65/191 (34%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D ++ ++ + ++ + ++SPGGS AG AI+ +Q +K Sbjct: 37 VIFLVGEVNDQTANLVVAQLLFLESENPDKDISFYINSPGGSVTAGMAIYDTMQFIKPDV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A + S + VL ++ Sbjct: 97 STLCCGFAASMGAFLLAAGAKGKRFSLPNSKIMIHQVLGGARGQATDIE----------- 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + R+++E +K ++ + T Sbjct: 146 -------------------IHARDILRTKDQMNRILAERTGQSIEKVKADTERDYFMTAD 186 Query: 217 EAKKVGLIDVV 227 EA+ GL+D V Sbjct: 187 EARDYGLVDQV 197 >gi|242240292|ref|YP_002988473.1| ATP-dependent Clp protease proteolytic subunit ClpP [Dickeya dadantii Ech703] gi|242132349|gb|ACS86651.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dickeya dadantii Ech703] Length = 207 Score = 44.2 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 60/196 (30%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDYMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + ++ Sbjct: 102 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L+++ D R + Sbjct: 156 ------------------------ILKVKARMNELMAKHTGQSLDIIERDTERDRFLSAG 191 Query: 217 EAKKVGLIDVVGGQEE 232 EA + GL+D V E Sbjct: 192 EAVEYGLVDSVLTHRE 207 >gi|332158438|ref|YP_004423717.1| hypothetical protein PNA2_0797 [Pyrococcus sp. NA2] gi|331033901|gb|AEC51713.1| hypothetical protein PNA2_0797 [Pyrococcus sp. NA2] Length = 280 Score = 44.2 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 11/178 (6%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+E++ I +D +I +PGG A I +A++ VI + M Sbjct: 73 IEDSEEVLRAIRMAPKDKPIDLII---HTPGGLVLAATQIAKALKDHPAETRVIVPHYAM 129 Query: 107 AASAGYLISCASNIIVAAETSLVGSIG-VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 + G LI+ A++ I+ +++G + L QYP + V + Sbjct: 130 SG--GTLIALAADKIIMDPHAVLGPVDPQLGQYPAPSIVRAVQKKGVDKVDDQTLILADV 187 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 + + + D R ++E + T EA+K+GL Sbjct: 188 AEKAIKQVRDFIFDLLKDKYGEEKARELAE-----ILTEGRWTHDYPITVEEARKLGL 240 >gi|330829918|ref|YP_004392870.1| ATP-dependent Clp protease proteolytic subunit [Aeromonas veronii B565] gi|328805054|gb|AEB50253.1| ATP-dependent Clp protease proteolytic subunit [Aeromonas veronii B565] Length = 207 Score = 44.2 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 57/190 (30%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIYIYINSPGGSVTAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A + V L Sbjct: 102 STVCMGQACSMGAFLLAGGAKGKRFCLPNARVMIHQPLG--------------------- 140 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 ++H + + R+ D + + Sbjct: 141 GFQGQASDIQIHAQEILKIKNTLNERLAFHTGQDMATIERDTDRDN--------FMSAEQ 192 Query: 218 AKKVGLIDVV 227 A GL+D V Sbjct: 193 AVAYGLVDGV 202 >gi|317492909|ref|ZP_07951333.1| Clp protease [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919031|gb|EFV40366.1| Clp protease [Enterobacteriaceae bacterium 9_2_54FAA] Length = 206 Score = 44.2 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 62/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 41 IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDV 100 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + ++ Sbjct: 101 STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 154 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L+++ P ++ R + Sbjct: 155 ------------------------ILKVKARMNELMAKHSGKPLEEIERDTERDRFLSAD 190 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D V Sbjct: 191 EAVEYGLVDSVMT 203 >gi|227833713|ref|YP_002835420.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium aurimucosum ATCC 700975] gi|262184720|ref|ZP_06044141.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium aurimucosum ATCC 700975] gi|227454729|gb|ACP33482.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium aurimucosum ATCC 700975] Length = 207 Score = 44.2 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 53/185 (28%), Gaps = 30/185 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D + + ++SPGGS A AI+ ++ V+ + + Sbjct: 48 TSANDIMAQLLVLESQDPDRDITMYINSPGGSFTALMAIYDTMRYVRPDVQTVCLGQAAS 107 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + A A S V Q Sbjct: 108 AAAVLLAAGAPGKRAALPNSRVLIHQPRTQ--------------------GTQGQVSDLE 147 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226 E N +E ++ +I T EA GLID Sbjct: 148 IEANEIERMRRLMEETL---------AEHTGRTAEQVRIDTDRDKILTAQEAVDYGLIDT 198 Query: 227 VGGQE 231 V Sbjct: 199 VFDYR 203 >gi|170767754|ref|ZP_02902207.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia albertii TW07627] gi|170123242|gb|EDS92173.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia albertii TW07627] Length = 207 Score = 44.2 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 102 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 156 ------------------------ILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAP 191 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 192 EAVEYGLVDSILT 204 >gi|315230668|ref|YP_004071104.1| hypothetical protein TERMP_00905 [Thermococcus barophilus MP] gi|315183696|gb|ADT83881.1| hypothetical protein TERMP_00905 [Thermococcus barophilus MP] Length = 279 Score = 44.2 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 68/184 (36%), Gaps = 23/184 (12%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+E++ I +D +I +PGG A I +A++ VI + M Sbjct: 73 IEDSEEILRAIRMAPKDKPIDLII---HTPGGLVLAATQIAKALKDHPAETRVIIPHYAM 129 Query: 107 AASAGYLISCASNIIVAAETSLVGSIG-VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 + G LI+ A++ I+ +++G + L QYP V++ K Sbjct: 130 SG--GTLIALAADKIIMDPHAVLGPVDPQLGQYPAPS-----------IVRAVEKKGPEK 176 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAK 219 + A + + + L + + + WT EA+ Sbjct: 177 VDDQTLILADVAEKAINQVRNFVYELLKDKYGEEKAKELAQILTEGRWTHDYPITVEEAQ 236 Query: 220 KVGL 223 K+GL Sbjct: 237 KLGL 240 >gi|56414396|ref|YP_151471.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363316|ref|YP_002142953.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|67460194|sp|Q5PFN4|CLPP_SALPA RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp; Flags: Precursor gi|226706471|sp|B5BD83|CLPP_SALPK RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|56128653|gb|AAV78159.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094793|emb|CAR60326.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 207 Score = 44.2 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGISIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 102 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 156 ------------------------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAP 191 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 192 EAVEYGLVDSILT 204 >gi|15800167|ref|NP_286179.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O157:H7 EDL933] gi|15829745|ref|NP_308518.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O157:H7 str. Sakai] gi|16128422|ref|NP_414971.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Escherichia coli str. K-12 substr. MG1655] gi|26246448|ref|NP_752487.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli CFT073] gi|30061939|ref|NP_836110.1| ATP-dependent Clp protease proteolytic subunit [Shigella flexneri 2a str. 2457T] gi|56479658|ref|NP_706331.2| ATP-dependent Clp protease proteolytic subunit [Shigella flexneri 2a str. 301] gi|74311012|ref|YP_309431.1| ATP-dependent Clp protease proteolytic subunit [Shigella sonnei Ss046] gi|82542925|ref|YP_406872.1| ATP-dependent Clp protease proteolytic subunit [Shigella boydii Sb227] gi|82775656|ref|YP_402003.1| ATP-dependent Clp protease proteolytic subunit [Shigella dysenteriae Sd197] gi|89107307|ref|AP_001087.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Escherichia coli str. K-12 substr. W3110] gi|91209511|ref|YP_539497.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli UTI89] gi|110640698|ref|YP_668426.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli 536] gi|110804465|ref|YP_687985.1| ATP-dependent Clp protease proteolytic subunit [Shigella flexneri 5 str. 8401] gi|117622697|ref|YP_851610.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli APEC O1] gi|157158299|ref|YP_001461624.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli E24377A] gi|157159964|ref|YP_001457282.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli HS] gi|168754541|ref|ZP_02779548.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli O157:H7 str. EC4401] gi|168768391|ref|ZP_02793398.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli O157:H7 str. EC4486] gi|168778128|ref|ZP_02803135.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli O157:H7 str. EC4196] gi|168778929|ref|ZP_02803936.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli O157:H7 str. EC4076] gi|168786287|ref|ZP_02811294.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli O157:H7 str. EC869] gi|170021190|ref|YP_001726144.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli ATCC 8739] gi|170080023|ref|YP_001729343.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Escherichia coli str. K-12 substr. DH10B] gi|170683276|ref|YP_001742581.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli SMS-3-5] gi|187731303|ref|YP_001879148.1| ATP-dependent Clp protease proteolytic subunit [Shigella boydii CDC 3083-94] gi|188492597|ref|ZP_02999867.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli 53638] gi|191174674|ref|ZP_03036146.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli F11] gi|193064129|ref|ZP_03045213.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli E22] gi|195938496|ref|ZP_03083878.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O157:H7 str. EC4024] gi|208809540|ref|ZP_03251877.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli O157:H7 str. EC4206] gi|208815859|ref|ZP_03257038.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli O157:H7 str. EC4045] gi|208822964|ref|ZP_03263282.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli O157:H7 str. EC4042] gi|209917654|ref|YP_002291738.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli SE11] gi|215485518|ref|YP_002327949.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O127:H6 str. E2348/69] gi|217326412|ref|ZP_03442496.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli O157:H7 str. TW14588] gi|218549895|ref|YP_002383686.1| ATP-dependent Clp protease proteolytic subunit [Escherichia fergusonii ATCC 35469] gi|218553004|ref|YP_002385917.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli IAI1] gi|218557347|ref|YP_002390260.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli S88] gi|218688301|ref|YP_002396513.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli ED1a] gi|218693900|ref|YP_002401567.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli 55989] gi|218698651|ref|YP_002406280.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli IAI39] gi|218703721|ref|YP_002411240.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli UMN026] gi|227884552|ref|ZP_04002357.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli 83972] gi|238899725|ref|YP_002925521.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Escherichia coli BW2952] gi|253774574|ref|YP_003037405.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160506|ref|YP_003043614.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli B str. REL606] gi|254791621|ref|YP_003076458.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O157:H7 str. TW14359] gi|256020408|ref|ZP_05434273.1| ATP-dependent Clp protease proteolytic subunit [Shigella sp. D9] gi|256023945|ref|ZP_05437810.1| ATP-dependent Clp protease proteolytic subunit [Escherichia sp. 4_1_40B] gi|260842638|ref|YP_003220416.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O103:H2 str. 12009] gi|260853660|ref|YP_003227551.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O26:H11 str. 11368] gi|260866598|ref|YP_003233000.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O111:H- str. 11128] gi|261223919|ref|ZP_05938200.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Escherichia coli O157:H7 str. FRIK2000] gi|261256367|ref|ZP_05948900.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O157:H7 str. FRIK966] gi|291281344|ref|YP_003498162.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O55:H7 str. CB9615] gi|293403558|ref|ZP_06647649.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli FVEC1412] gi|293408587|ref|ZP_06652426.1| Clp protease [Escherichia coli B354] gi|297516115|ref|ZP_06934501.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli OP50] gi|298379170|ref|ZP_06989051.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli FVEC1302] gi|300818231|ref|ZP_07098442.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 107-1] gi|300820317|ref|ZP_07100469.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 119-7] gi|300903295|ref|ZP_07121223.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 84-1] gi|300918180|ref|ZP_07134787.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 115-1] gi|300930260|ref|ZP_07145673.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 187-1] gi|300947910|ref|ZP_07162058.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 116-1] gi|301025667|ref|ZP_07189185.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 196-1] gi|301330696|ref|ZP_07223298.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 78-1] gi|306813096|ref|ZP_07447289.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli NC101] gi|307137081|ref|ZP_07496437.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli H736] gi|307312185|ref|ZP_07591821.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli W] gi|309794830|ref|ZP_07689251.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 145-7] gi|331640957|ref|ZP_08342092.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli H736] gi|331645613|ref|ZP_08346717.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli M605] gi|331651375|ref|ZP_08352400.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli M718] gi|331656494|ref|ZP_08357456.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli TA206] gi|331661818|ref|ZP_08362741.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli TA143] gi|331666792|ref|ZP_08367666.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli TA271] gi|331671984|ref|ZP_08372780.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli TA280] gi|331676109|ref|ZP_08376821.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli H591] gi|331681832|ref|ZP_08382465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli H299] gi|62288033|sp|P0A6G7|CLPP_ECOLI RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Caseinolytic protease; AltName: Full=Endopeptidase Clp; AltName: Full=Heat shock protein F21.5; AltName: Full=Protease Ti; Flags: Precursor gi|62288034|sp|P0A6G8|CLPP_ECOL6 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp; Flags: Precursor gi|62288035|sp|P0A6G9|CLPP_ECO57 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp; Flags: Precursor gi|62288036|sp|P0A6H0|CLPP_SHIFL RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|90183183|sp|Q325G4|CLPP_SHIBS RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|90183184|sp|Q32JJ3|CLPP_SHIDS RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|110816465|sp|Q3Z4W6|CLPP_SHISS RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|116243134|sp|Q0TKK4|CLPP_ECOL5 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp; Flags: Precursor gi|116243136|sp|Q1RF98|CLPP_ECOUT RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp; Flags: Precursor gi|122957620|sp|Q0T7E6|CLPP_SHIF8 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|166201821|sp|A1A8A6|CLPP_ECOK1 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|167008648|sp|A7ZIJ5|CLPP_ECO24 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|167008649|sp|A7ZX95|CLPP_ECOHS RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|189082457|sp|B1J011|CLPP_ECOLC RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|310942734|pdb|3MT6|R Chain R, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942735|pdb|3MT6|S Chain S, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942736|pdb|3MT6|T Chain T, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942737|pdb|3MT6|U Chain U, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942738|pdb|3MT6|O Chain O, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942739|pdb|3MT6|P Chain P, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942740|pdb|3MT6|Q Chain Q, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942741|pdb|3MT6|Y Chain Y, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942742|pdb|3MT6|Z Chain Z, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942743|pdb|3MT6|AA Chain a, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942744|pdb|3MT6|BB Chain b, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942745|pdb|3MT6|V Chain V, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942746|pdb|3MT6|W Chain W, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942747|pdb|3MT6|X Chain X, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942748|pdb|3MT6|M Chain M, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942749|pdb|3MT6|L Chain L, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942750|pdb|3MT6|K Chain K, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942751|pdb|3MT6|J Chain J, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942752|pdb|3MT6|I Chain I, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942753|pdb|3MT6|H Chain H, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942754|pdb|3MT6|N Chain N, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942755|pdb|3MT6|F Chain F, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942756|pdb|3MT6|E Chain E, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942757|pdb|3MT6|D Chain D, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942758|pdb|3MT6|C Chain C, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942759|pdb|3MT6|B Chain B, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942760|pdb|3MT6|A Chain A, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|310942761|pdb|3MT6|G Chain G, Structure Of Clpp From Escherichia Coli In Complex With Adep1 gi|12513299|gb|AAG54787.1|AE005223_2 ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5 [Escherichia coli O157:H7 str. EDL933] gi|26106846|gb|AAN79031.1|AE016756_214 ATP-dependent Clp protease proteolytic subunit [Escherichia coli CFT073] gi|145556|gb|AAA23588.1| ATP-dependent protease (clpP) [Escherichia coli] gi|1773121|gb|AAB40193.1| ATP-dependent Clp proteinase [Escherichia coli] gi|1786641|gb|AAC73540.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Escherichia coli str. K-12 substr. MG1655] gi|13359948|dbj|BAB33914.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP [Escherichia coli O157:H7 str. Sakai] gi|30040183|gb|AAP15916.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5 [Shigella flexneri 2a str. 2457T] gi|56383209|gb|AAN42038.2| ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5 [Shigella flexneri 2a str. 301] gi|73854489|gb|AAZ87196.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease [Shigella sonnei Ss046] gi|81239804|gb|ABB60514.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease [Shigella dysenteriae Sd197] gi|81244336|gb|ABB65044.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease [Shigella boydii Sb227] gi|85674577|dbj|BAE76217.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Escherichia coli str. K12 substr. W3110] gi|91071085|gb|ABE05966.1| ATP-dependent proteolytic subunit of clpA-ClpP serine protease, heat shock protein F21.5 [Escherichia coli UTI89] gi|110342290|gb|ABG68527.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli 536] gi|110614013|gb|ABF02680.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease [Shigella flexneri 5 str. 8401] gi|115511821|gb|ABI99895.1| ATP-dependent proteolytic subunit of ClpA-ClpP serine protease [Escherichia coli APEC O1] gi|157065644|gb|ABV04899.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli HS] gi|157080329|gb|ABV20037.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli E24377A] gi|169756118|gb|ACA78817.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli ATCC 8739] gi|169887858|gb|ACB01565.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Escherichia coli str. K-12 substr. DH10B] gi|170520994|gb|ACB19172.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli SMS-3-5] gi|187428295|gb|ACD07569.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella boydii CDC 3083-94] gi|187766815|gb|EDU30659.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli O157:H7 str. EC4196] gi|188487796|gb|EDU62899.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli 53638] gi|189003087|gb|EDU72073.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli O157:H7 str. EC4076] gi|189358046|gb|EDU76465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli O157:H7 str. EC4401] gi|189362475|gb|EDU80894.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli O157:H7 str. EC4486] gi|189373600|gb|EDU92016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli O157:H7 str. EC869] gi|190905047|gb|EDV64714.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli F11] gi|192929158|gb|EDV82768.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli E22] gi|208729341|gb|EDZ78942.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli O157:H7 str. EC4206] gi|208732507|gb|EDZ81195.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli O157:H7 str. EC4045] gi|208737157|gb|EDZ84841.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli O157:H7 str. EC4042] gi|209743854|gb|ACI70234.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP [Escherichia coli] gi|209743856|gb|ACI70235.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP [Escherichia coli] gi|209743858|gb|ACI70236.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP [Escherichia coli] gi|209743860|gb|ACI70237.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP [Escherichia coli] gi|209743862|gb|ACI70238.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP [Escherichia coli] gi|209910913|dbj|BAG75987.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli SE11] gi|215263590|emb|CAS07920.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Escherichia coli O127:H6 str. E2348/69] gi|217322633|gb|EEC31057.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli O157:H7 str. TW14588] gi|218350632|emb|CAU96324.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Escherichia coli 55989] gi|218357436|emb|CAQ90075.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Escherichia fergusonii ATCC 35469] gi|218359772|emb|CAQ97313.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Escherichia coli IAI1] gi|218364116|emb|CAR01781.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Escherichia coli S88] gi|218368637|emb|CAR16376.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Escherichia coli IAI39] gi|218425865|emb|CAR06671.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Escherichia coli ED1a] gi|218430818|emb|CAR11692.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Escherichia coli UMN026] gi|222032232|emb|CAP74971.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli LF82] gi|227838638|gb|EEJ49104.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli 83972] gi|238863325|gb|ACR65323.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Escherichia coli BW2952] gi|242376218|emb|CAQ30909.1| clpP, subunit of ClpP serine protease, ClpAP, ClpXP and ClpAXP [Escherichia coli BL21(DE3)] gi|253325618|gb|ACT30220.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972407|gb|ACT38078.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli B str. REL606] gi|253976617|gb|ACT42287.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli BL21(DE3)] gi|254591021|gb|ACT70382.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Escherichia coli O157:H7 str. TW14359] gi|257752309|dbj|BAI23811.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O26:H11 str. 11368] gi|257757785|dbj|BAI29282.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O103:H2 str. 12009] gi|257762954|dbj|BAI34449.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O111:H- str. 11128] gi|260450376|gb|ACX40798.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli DH1] gi|281177608|dbj|BAI53938.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli SE15] gi|281599777|gb|ADA72761.1| ATP-dependent Clp protease proteolytic subunit [Shigella flexneri 2002017] gi|284920247|emb|CBG33306.1| ATP-dependent clp protease proteolytic subunit [Escherichia coli 042] gi|290761217|gb|ADD55178.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O55:H7 str. CB9615] gi|291429411|gb|EFF02431.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli FVEC1412] gi|291471765|gb|EFF14248.1| Clp protease [Escherichia coli B354] gi|294492533|gb|ADE91289.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli IHE3034] gi|298280283|gb|EFI21787.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli FVEC1302] gi|299880021|gb|EFI88232.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 196-1] gi|300404590|gb|EFJ88128.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 84-1] gi|300414631|gb|EFJ97941.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 115-1] gi|300452510|gb|EFK16130.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 116-1] gi|300461832|gb|EFK25325.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 187-1] gi|300527102|gb|EFK48171.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 119-7] gi|300529122|gb|EFK50184.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 107-1] gi|300843357|gb|EFK71117.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 78-1] gi|305853859|gb|EFM54298.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli NC101] gi|306907687|gb|EFN38189.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli W] gi|307552344|gb|ADN45119.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli ABU 83972] gi|307628093|gb|ADN72397.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli UM146] gi|308121483|gb|EFO58745.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 145-7] gi|309700698|emb|CBI99994.1| ATP-dependent clp protease proteolytic subunit [Escherichia coli ETEC H10407] gi|312945015|gb|ADR25842.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O83:H1 str. NRG 857C] gi|315059717|gb|ADT74044.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Escherichia coli W] gi|315135119|dbj|BAJ42278.1| conserved hypothetical protein [Escherichia coli DH1] gi|320173743|gb|EFW48926.1| ATP-dependent Clp protease proteolytic subunit [Shigella dysenteriae CDC 74-1112] gi|320178281|gb|EFW53255.1| ATP-dependent Clp protease proteolytic subunit [Shigella boydii ATCC 9905] gi|320186067|gb|EFW60812.1| ATP-dependent Clp protease proteolytic subunit [Shigella flexneri CDC 796-83] gi|320192853|gb|EFW67493.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O157:H7 str. EC1212] gi|320197089|gb|EFW71708.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli WV_060327] gi|320201681|gb|EFW76257.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli EC4100B] gi|320638432|gb|EFX08146.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O157:H7 str. G5101] gi|320643812|gb|EFX12935.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O157:H- str. 493-89] gi|320649163|gb|EFX17741.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O157:H- str. H 2687] gi|320656056|gb|EFX23972.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661206|gb|EFX28637.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O55:H7 str. USDA 5905] gi|320665182|gb|EFX32275.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O157:H7 str. LSU-61] gi|323379718|gb|ADX51986.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli KO11] gi|323938623|gb|EGB34872.1| Clp protease [Escherichia coli E1520] gi|323943244|gb|EGB39400.1| Clp protease [Escherichia coli E482] gi|323945342|gb|EGB41398.1| Clp protease [Escherichia coli H120] gi|323952951|gb|EGB48819.1| Clp protease [Escherichia coli H252] gi|323958630|gb|EGB54333.1| Clp protease [Escherichia coli H263] gi|323963427|gb|EGB58989.1| Clp protease [Escherichia coli H489] gi|323965124|gb|EGB60583.1| Clp protease [Escherichia coli M863] gi|323972291|gb|EGB67501.1| Clp protease [Escherichia coli TA007] gi|323976078|gb|EGB71171.1| Clp protease [Escherichia coli TW10509] gi|324114664|gb|EGC08632.1| Clp protease [Escherichia fergusonii B253] gi|324116925|gb|EGC10838.1| Clp protease [Escherichia coli E1167] gi|326341201|gb|EGD64993.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O157:H7 str. 1044] gi|326346024|gb|EGD69763.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli O157:H7 str. 1125] gi|330910231|gb|EGH38741.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli AA86] gi|331037755|gb|EGI09975.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli H736] gi|331045775|gb|EGI17901.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli M605] gi|331051116|gb|EGI23168.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli M718] gi|331054742|gb|EGI26751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli TA206] gi|331060240|gb|EGI32204.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli TA143] gi|331066016|gb|EGI37900.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli TA271] gi|331070973|gb|EGI42332.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli TA280] gi|331076167|gb|EGI47449.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli H591] gi|331081034|gb|EGI52199.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli H299] Length = 207 Score = 44.2 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 102 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 156 ------------------------ILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAP 191 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 192 EAVEYGLVDSILT 204 >gi|310778837|ref|YP_003967170.1| peptidase S14 ClpP [Ilyobacter polytropus DSM 2926] gi|309748160|gb|ADO82822.1| peptidase S14 ClpP [Ilyobacter polytropus DSM 2926] Length = 360 Score = 43.8 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 72/237 (30%), Gaps = 40/237 (16%) Query: 41 IAIRGQIED----SQELIER---IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 + I G+I + ++ + ++ + ++SPGGS AI+ +++ Sbjct: 20 LRIYGEITKFSWWDETVVTASDFARELEELKDTESINLCINSPGGSVTEAHAIYNMLKRY 79 Query: 94 K--NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 N + T + +AASA I+ A + I + + V L K Sbjct: 80 AKANNVKITTYIDGVAASAASYIAMAGDEICMGLGASLMIHNVNGGAWGESKDLRKTADL 139 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + + + N+ + L + Sbjct: 140 MD------------------------------KLKENIIDIYVTQSNLSREVISNLMNEE 169 Query: 212 IW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 W T EA + G ID + E + + I PP+ ++K + Sbjct: 170 TWMTPEEALEYGFIDKIETYETISDDDIDNLFTREITNSIKALPPRISQLRNVKKQA 226 >gi|253575671|ref|ZP_04853007.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14] gi|251845009|gb|EES73021.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14] Length = 196 Score = 43.8 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D +I ++ ++ +D + + ++SPGGS AG I+ +Q +K Sbjct: 29 IIFLSNAIDDEVANLVIAQLLFLAAEDPEKDIHLYINSPGGSVTAGMGIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A S V L Sbjct: 89 STICVGMAASMGSLLLTAGAPGKRYALPNSEVMIHQPLGGVRGQ---------------- 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +++ D + + ++ E P +K +D + + Sbjct: 133 --------------ATDIKIHADWIIKTRQKLNQIYVERTGQPLEKIERDTDRDFFMSAE 178 Query: 217 EAKKVGLIDVV 227 EAK G+ID V Sbjct: 179 EAKAYGIIDQV 189 >gi|219885303|gb|ACL53026.1| unknown [Zea mays] Length = 302 Score = 43.8 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ + + ++SPGG AG AI+ +Q ++ Sbjct: 103 IVCIHGPIADDTASLVVAQLLFLESENPLKPVHLYINSPGGVVTAGLAIYDTMQYIR--- 159 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 C + + + +GS+ + P + L V I Sbjct: 160 ------------------CPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVMIHQPSG 201 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + H R + E Sbjct: 202 GAQGQATDIAIQAKEILKMRDRLNKIYQKHT--------RQPIDKIEQCMERDLFMDPEE 253 Query: 218 AKKVGLIDVV 227 A+ GLID V Sbjct: 254 ARDWGLIDEV 263 >gi|195645066|gb|ACG42001.1| ATP-dependent Clp protease proteolytic subunit [Zea mays] Length = 302 Score = 43.8 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ + + ++SPGG AG AI+ +Q ++ Sbjct: 103 IVCIHGPIADDTASLVVAQLLFLESENPLKPVHLYINSPGGVVTAGLAIYDTMQYIR--- 159 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 C + + + +GS+ + P + L V I Sbjct: 160 ------------------CPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVMIHQPSG 201 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + H R + E Sbjct: 202 GAQGQATDIAIQAKEILKMRDRLNKIYQKHT--------RQPIDKIEQCMERDLFMDPEE 253 Query: 218 AKKVGLIDVV 227 A+ GLID V Sbjct: 254 ARDWGLIDEV 263 >gi|226491764|ref|NP_001150643.1| ATP-dependent Clp protease proteolytic subunit [Zea mays] gi|195640820|gb|ACG39878.1| ATP-dependent Clp protease proteolytic subunit [Zea mays] Length = 302 Score = 43.8 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ + + ++SPGG AG AI+ +Q ++ Sbjct: 103 IVCIHGPIADDTASLVVAQLLFLESENPLKPVHLYINSPGGVVTAGLAIYDTMQYIR--- 159 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 C + + + +GS+ + P + L V I Sbjct: 160 ------------------CPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVMIHQPSG 201 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + H R + E Sbjct: 202 GAQGQATDIAIQAKEILKMRDRLNKIYQKHT--------RQPIDKIEQCMERDLFMDPEE 253 Query: 218 AKKVGLIDVV 227 A+ GLID V Sbjct: 254 ARDWGLIDEV 263 >gi|254361891|ref|ZP_04978025.1| S14 family bacteriophage protease [Mannheimia haemolytica PHL213] gi|153093430|gb|EDN74421.1| S14 family bacteriophage protease [Mannheimia haemolytica PHL213] Length = 653 Score = 43.8 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 69/203 (33%), Gaps = 37/203 (18%) Query: 30 HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 +++ + A I+I +I +Q+ + ++ + + + + + SPGG + G A Sbjct: 6 NIQAKANDTAEISIFDEIGFWGVTAQQFAKDLKALGN--NLKQINLHIHSPGGDVFDGIA 63 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+ ++ K + +AAS +I+ A + I+ E +++ Sbjct: 64 IYNLLKNHPANKT--VYIDGLAASMASVIAMAGDEIIMPENAMMMIH------------- 108 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 ++ + + + V+++ D Sbjct: 109 -----KPWGIQGGDA-----------DDMRKYADLLDKVESTLIMAYVAKTGKYETDLAE 152 Query: 206 VLSDGRIWTGAEAKKVGLIDVVG 228 +L + TG E + G D + Sbjct: 153 MLKEETWLTGKECVEQGFADKLA 175 >gi|219849052|ref|YP_002463485.1| Endopeptidase Clp [Chloroflexus aggregans DSM 9485] gi|219543311|gb|ACL25049.1| Endopeptidase Clp [Chloroflexus aggregans DSM 9485] Length = 221 Score = 43.8 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 70/200 (35%), Gaps = 34/200 (17%) Query: 40 RIAIRGQIEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 RI I G D Q ++ ++ + +D + + ++SPGGS AG I+ + ++ Sbjct: 52 RIVILGTPIDDQIANLIVAQLLFLESEDPDRDIWLYINSPGGSVTAGLGIYDTMHHIRPD 111 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 + + + L A + S +I Sbjct: 112 VATVCVGMAGSMATPILAGGAKGKRYSLPHS-----------------------TIHMHP 148 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215 + +P E+ + + L+++ P ++ D ++ T Sbjct: 149 AGGGARGYAPDVEIMARE-------LLRLQQLVRELLAKDTGQPIERIAKDFDRDLFMTP 201 Query: 216 AEAKKVGLIDVVGGQEEVWQ 235 +AK+ G+ID + +E+V + Sbjct: 202 EQAKEYGIIDEILIREDVKK 221 >gi|153209414|ref|ZP_01947390.1| nfeD family protein [Coxiella burnetii 'MSU Goat Q177'] gi|165919416|ref|ZP_02219482.1| nfeD family protein [Coxiella burnetii RSA 334] gi|212219206|ref|YP_002305993.1| non-proteolytic membrane spanning protein, peptidase family S49 [Coxiella burnetii CbuK_Q154] gi|120575351|gb|EAX31975.1| nfeD family protein [Coxiella burnetii 'MSU Goat Q177'] gi|165916932|gb|EDR35536.1| nfeD family protein [Coxiella burnetii RSA 334] gi|212013468|gb|ACJ20848.1| non-proteolytic membrane spanning protein, peptidase family S49 [Coxiella burnetii CbuK_Q154] Length = 458 Score = 43.8 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 74/232 (31%), Gaps = 23/232 (9%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVAR-IAIRGQI--EDSQELIERIERIS 61 K+I R + ++T ++ + ++N+ +A I I+G I + +++ + Sbjct: 4 RKRIFIRCFYILMLTFGLLGIASHIIAQNNTRRLAILIDIKGGIGPATADFFHRSLKQAT 63 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 A +I+ L +PGG A A I + I + + A + Sbjct: 64 E-KKAQVIILQLDTPGGLATAMRDIIKDILA---------------SPIPVIGYVAPSGA 107 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS---PMKAEPSPFSEVNPKAVQMM 178 AA L E ++ P Sbjct: 108 HAASAGTYILYATHIAAMAPGTNLGAATPIAIGTPGGSSPEKGNEKKEGAKKAPAQKTAA 167 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229 + S ++R +++ R + + + + EA K+ +I+++ Sbjct: 168 EKKAISDARAYIRSLAQLRGRNVEWAESAVVEAESLSAEEAYKIKVINIIAS 219 >gi|111223668|ref|YP_714462.1| ATP-dependent Clp protease proteolytic subunit [Frankia alni ACN14a] gi|111151200|emb|CAJ62911.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [Frankia alni ACN14a] Length = 221 Score = 43.8 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 31/185 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + +D + + ++SPGGS + AI+ +Q V+ I + Sbjct: 55 VSANDVMAQLLFLESEDPDRDISIYINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAAS 114 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + A E S + Q L+ I V Sbjct: 115 AAAVLLAAGTPGKRFALENSRILIHQPSAQGEGQSSDLEIQAREILRV------------ 162 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226 L++ + +I++ AEAK+ GL+D Sbjct: 163 ------------------RALQETLLARHTGRSETEIRRDTERDKIFSAAEAKEYGLVDD 204 Query: 227 VGGQE 231 V Sbjct: 205 VITSR 209 >gi|108935917|sp|Q2J9A9|CLPP3_FRASC RecName: Full=ATP-dependent Clp protease proteolytic subunit 3; AltName: Full=Endopeptidase Clp 3 Length = 213 Score = 43.8 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 64/194 (32%), Gaps = 29/194 (14%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + +D + + ++SPGGS + AI+ +Q V+ I + Sbjct: 48 VSANDVMAQLLFLESEDPDRDISIYINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAAS 107 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + A E S + Q Sbjct: 108 AAAVLLAAGTPGKRFALENSRILIHQPSAQGEGQS------------------------- 142 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 + +Q + + + + R + +I++ EA++ GLID V Sbjct: 143 ---SDIEIQAREILRVRALQETMLARHTGRTET-EIRRDTERDKIFSADEAEEYGLIDEV 198 Query: 228 GGQEEVWQSLYALG 241 + + L A Sbjct: 199 IMSRKAARLLSARS 212 >gi|313894919|ref|ZP_07828479.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Selenomonas sp. oral taxon 137 str. F0430] gi|312976600|gb|EFR42055.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Selenomonas sp. oral taxon 137 str. F0430] Length = 205 Score = 43.8 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+DS ++ ++ + +D + + ++SPGG AG AI+ +Q +K Sbjct: 30 IIFLGGPIDDSVANVVVAQMLFLESEDPDKDIHLYINSPGGVVTAGLAIYDTMQYIKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + + L Sbjct: 90 STICIGQAASMGSILLTAGAKGKRYALPHARIMIHQPLGGAQGQST-------------- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 +Q+ + +++ DK + Sbjct: 136 ----------------DIQIQAKEILRLREVGNEILARHTGQDTDKINVDTERDNFMSAE 179 Query: 217 EAKKVGLIDVV 227 EAK GLID V Sbjct: 180 EAKAYGLIDEV 190 >gi|291548434|emb|CBL21542.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus sp. SR1/5] Length = 193 Score = 43.8 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 58/176 (32%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + + ++SPGGS AG AI+ +Q +K I + A Sbjct: 44 IVAQLLFLEAEDPSKDIQLYINSPGGSVTAGMAIYDTMQYIKCDVSTICLGMAASMGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L S A A S + + ++ + + + K Sbjct: 104 LSSGAKGKRYALPNSTIMIHQPSG---GAQGQATEIQIVADQIAKTKKKLNEIL------ 154 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 S + P + +D + T EAK GLID V Sbjct: 155 ---------------------SANTGQPLEIVEKDTDRDNYMTAEEAKAYGLIDGV 189 >gi|15639498|ref|NP_218948.1| ATP-dependent Clp protease proteolytic subunit [Treponema pallidum subsp. pallidum str. Nichols] gi|189025737|ref|YP_001933509.1| ATP-dependent Clp protease proteolytic subunit [Treponema pallidum subsp. pallidum SS14] gi|6225161|sp|O83520|CLPP1_TREPA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; AltName: Full=Endopeptidase Clp 1 gi|3322799|gb|AAC65495.1| ATP-dependent Clp protease proteolytic component (clpP-1) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018312|gb|ACD70930.1| ATP-dependent Clp protease proteolytic component [Treponema pallidum subsp. pallidum SS14] gi|291059884|gb|ADD72619.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema pallidum subsp. pallidum str. Chicago] Length = 203 Score = 43.8 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 53/167 (31%), Gaps = 7/167 (4%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D+ ++ ++ + + + + ++SPGG+ AG A++ +Q + Sbjct: 34 IIFVDGEITDAVADLVVAQLLFLESQNPDKDISLYINSPGGAVTAGLAVYDTMQHICPEV 93 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK-----PFLDKLGVSI 152 I + +A L A A +S V + L + Sbjct: 94 QTICLGQASSMAAVLLAGGAPGKRFALPSSRVMIHQPWGGVQGQASDVCIQAQEILRLKT 153 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 ++ + S + + V V + R Sbjct: 154 LTIAYFALHTGQSEEQVREDMERDFFLSAEQACSYGIVDTVMKRRKH 200 >gi|260776236|ref|ZP_05885131.1| nfed family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260607459|gb|EEX33724.1| nfed family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 459 Score = 43.8 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 80/245 (32%), Gaps = 20/245 (8%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISR 62 +K+I + L + V V I ++G I S + IE+ + Sbjct: 1 MKRISIFIISWLLAISSAVA-----------NEVWIIPLKGAIGPATSDYVSREIEQAHQ 49 Query: 63 DDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 + +++ + +PGG + + I + AASAG I AS+I Sbjct: 50 TGTVKLILLKMDTPGGLDSAMRDMIRSITTSHIPVATWVGPSGARAASAGTYILFASHIA 109 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 AE + +G+ + P + S + S + + + Sbjct: 110 AMAEATNLGAATPVSLGGGAPPSTTPANEDDSTQGSDESAPQNSEKVPAKTAMEKKVIND 169 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 + RL RN + + +S+ EA ++ +ID + E L Sbjct: 170 AKAYIKGLARL--HGRNAEWAE-KAVSEAASLDAMEAFELNVIDFIASSPE---QLIEKA 223 Query: 242 VDQSI 246 + + Sbjct: 224 NGREV 228 >gi|119473285|ref|ZP_01614937.1| ATP-dependent Clp protease proteolytic subunit [Alteromonadales bacterium TW-7] gi|119444508|gb|EAW25828.1| ATP-dependent Clp protease proteolytic subunit [Alteromonadales bacterium TW-7] Length = 173 Score = 43.8 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED+ ++ ++ + ++ + + ++SPGGS AG AI+ + +K Sbjct: 6 IIFLTGQVEDNMANLILAQMLFLESENPDKDIFLYINSPGGSVTAGMAIYDTMNFIKPDV 65 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + + I S+ Sbjct: 66 STICVGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQASDFEIHAKEILSI-- 123 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 RL++E P D + + Sbjct: 124 ----------------------------KDKLNRLMAEHTGQPLDVISKDTDRDNFMSAS 155 Query: 217 EAKKVGLIDVV 227 EA + GL+D V Sbjct: 156 EAVEYGLVDSV 166 >gi|16331162|ref|NP_441890.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp. PCC 6803] gi|3023511|sp|P74467|CLPP3_SYNY3 RecName: Full=Probable ATP-dependent Clp protease proteolytic subunit 3; AltName: Full=Endopeptidase Clp 3 gi|1653656|dbj|BAA18568.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp. PCC 6803] Length = 202 Score = 43.8 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 32/187 (17%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 + I + ++ + + DD + + + ++SPGGS AG AI+ +Q +K I Sbjct: 38 EVNDSIAN--RIVAFLLYLDSDDPSKPIYLYINSPGGSVTAGMAIYDTMQYIKAEVITIC 95 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + A L S A +A + + + + + Sbjct: 96 VGLAASMGAFLLASGAPGKRLALPHARIMIHQPMGGTGRRQATDIDIEAR---------- 145 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220 + ++++ +K +D + + AEAK+ Sbjct: 146 -------------------EILRIRQQLNEIMAQRTGQTVEKIAKDTDRDYFLSAAEAKE 186 Query: 221 VGLIDVV 227 GLID V Sbjct: 187 YGLIDKV 193 >gi|332653082|ref|ZP_08418827.1| Clp protease [Ruminococcaceae bacterium D16] gi|332518228|gb|EGJ47831.1| Clp protease [Ruminococcaceae bacterium D16] Length = 236 Score = 43.8 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 81/239 (33%), Gaps = 47/239 (19%) Query: 27 WSSHVEDNSPHVARIAIRGQIED------------SQELIERIERISRDDSATALIVSLS 74 SS ++ + V + I GQ+E + ++ + + ++ L+V L+ Sbjct: 25 GSSIIQTSKGTVHVLTIVGQVEGHQVLPPSSKSTKYEHVMPLLAMVEESEAIDGLLVLLN 84 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 + GG AG I I KP ++ V S G ++ ++ A ++ + V Sbjct: 85 TVGGDVEAGLGIAELIA--GMSKPTVSLVLGGGHSIGVPLAVSAKRSFIAPSAAMTIHPV 142 Query: 135 LFQ-----YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 P + +++ I ++ K + F+E+ Sbjct: 143 RLNGLVIGVPQTFYYFERVQERITQFVTANSKIKRETFTEL------------------- 183 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 G + G EA ++GLID +GG L+ + ++ + Sbjct: 184 ----MLKTGELAADV-----GSVIYGQEAVELGLIDEIGGLSSALDCLHGMIRERRAAE 233 >gi|126207994|ref|YP_001053219.1| putative Clp-like protease [Actinobacillus pleuropneumoniae L20] gi|190149760|ref|YP_001968285.1| Clp-like protease [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|126096786|gb|ABN73614.1| putative Clp-like protease [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189914891|gb|ACE61143.1| putative Clp-like protease [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 674 Score = 43.8 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 67/203 (33%), Gaps = 37/203 (18%) Query: 30 HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 ++ + A I+I +I +Q+ ++ + + + + + SPGG + G A Sbjct: 27 TIKAAANDTAEISIYDEIGFWGVTAQQFANDLKALGN--NLKQINLHIHSPGGDVFDGIA 84 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+ ++ K + +AAS +I+ A N I+ E +++ Sbjct: 85 IYNLLKNHPANKT--VYIDGLAASMASVIAMAGNEIIMPENAMMMIH------------- 129 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 ++ + + + V+++ + Sbjct: 130 -----KPWGIQGGDA-----------DDMRKYADLLDKVESTLIMAYVAKTEKSEEELAE 173 Query: 206 VLSDGRIWTGAEAKKVGLIDVVG 228 +L + TG E + G D + Sbjct: 174 MLKEETWLTGKECVEQGFADKLA 196 >gi|293189653|ref|ZP_06608370.1| Clp protease [Actinomyces odontolyticus F0309] gi|315604695|ref|ZP_07879758.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp. oral taxon 180 str. F0310] gi|292821391|gb|EFF80333.1| Clp protease [Actinomyces odontolyticus F0309] gi|315313707|gb|EFU61761.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp. oral taxon 180 str. F0310] Length = 214 Score = 43.8 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 68/188 (36%), Gaps = 30/188 (15%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D + + + ++SPGGS A AI+ +Q +K + + + Sbjct: 56 ASADDVMAQLLVLESQDPDSLITMYINSPGGSFTALTAIYDTMQYIKPQIQTVCLGQAAS 115 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + + +A + V + + Sbjct: 116 AAAVLLAAGSPGKRLALPNARVLIHQPAMEGMQGQA------------------------ 151 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226 +Q++ D +D W +S+ P ++ + +I T +A + GLID Sbjct: 152 -----SDIQIVADEIDRMRAWLEDTISKHSGKPVEQVRRDIERDKILTAPQAAEYGLIDQ 206 Query: 227 VGGQEEVW 234 V + Sbjct: 207 VLESRKAL 214 >gi|3318853|pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis gi|3318854|pdb|1TYF|B Chain B, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis gi|3318855|pdb|1TYF|C Chain C, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis gi|3318856|pdb|1TYF|D Chain D, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis gi|3318857|pdb|1TYF|E Chain E, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis gi|3318858|pdb|1TYF|F Chain F, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis gi|3318859|pdb|1TYF|G Chain G, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis gi|3318860|pdb|1TYF|H Chain H, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis gi|3318861|pdb|1TYF|I Chain I, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis gi|3318862|pdb|1TYF|J Chain J, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis gi|3318863|pdb|1TYF|K Chain K, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis gi|3318864|pdb|1TYF|L Chain L, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis gi|3318865|pdb|1TYF|M Chain M, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis gi|3318866|pdb|1TYF|N Chain N, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis gi|93278456|pdb|1YG6|A Chain A, Clpp gi|93278457|pdb|1YG6|B Chain B, Clpp gi|93278458|pdb|1YG6|C Chain C, Clpp gi|93278459|pdb|1YG6|D Chain D, Clpp gi|93278460|pdb|1YG6|E Chain E, Clpp gi|93278461|pdb|1YG6|F Chain F, Clpp gi|93278462|pdb|1YG6|G Chain G, Clpp gi|93278463|pdb|1YG6|H Chain H, Clpp gi|93278464|pdb|1YG6|I Chain I, Clpp gi|93278465|pdb|1YG6|J Chain J, Clpp gi|93278466|pdb|1YG6|K Chain K, Clpp gi|93278467|pdb|1YG6|L Chain L, Clpp gi|93278468|pdb|1YG6|M Chain M, Clpp gi|93278469|pdb|1YG6|N Chain N, Clpp gi|109157730|pdb|2FZS|A Chain A, Crystal Structure Of E. Coli Clpp With A Peptide Chloromethyl Ketone Covalently Bound At The Active Site gi|109157731|pdb|2FZS|B Chain B, Crystal Structure Of E. Coli Clpp With A Peptide Chloromethyl Ketone Covalently Bound At The Active Site gi|109157732|pdb|2FZS|C Chain C, Crystal Structure Of E. Coli Clpp With A Peptide Chloromethyl Ketone Covalently Bound At The Active Site gi|109157733|pdb|2FZS|D Chain D, Crystal Structure Of E. Coli Clpp With A Peptide Chloromethyl Ketone Covalently Bound At The Active Site gi|109157734|pdb|2FZS|E Chain E, Crystal Structure Of E. Coli Clpp With A Peptide Chloromethyl Ketone Covalently Bound At The Active Site gi|109157735|pdb|2FZS|F Chain F, Crystal Structure Of E. Coli Clpp With A Peptide Chloromethyl Ketone Covalently Bound At The Active Site gi|109157736|pdb|2FZS|G Chain G, Crystal Structure Of E. Coli Clpp With A Peptide Chloromethyl Ketone Covalently Bound At The Active Site gi|109157737|pdb|2FZS|H Chain H, Crystal Structure Of E. Coli Clpp With A Peptide Chloromethyl Ketone Covalently Bound At The Active Site gi|109157738|pdb|2FZS|I Chain I, Crystal Structure Of E. Coli Clpp With A Peptide Chloromethyl Ketone Covalently Bound At The Active Site gi|109157739|pdb|2FZS|J Chain J, Crystal Structure Of E. Coli Clpp With A Peptide Chloromethyl Ketone Covalently Bound At The Active Site gi|109157740|pdb|2FZS|K Chain K, Crystal Structure Of E. Coli Clpp With A Peptide Chloromethyl Ketone Covalently Bound At The Active Site gi|109157741|pdb|2FZS|L Chain L, Crystal Structure Of E. Coli Clpp With A Peptide Chloromethyl Ketone Covalently Bound At The Active Site gi|109157742|pdb|2FZS|M Chain M, Crystal Structure Of E. Coli Clpp With A Peptide Chloromethyl Ketone Covalently Bound At The Active Site gi|109157743|pdb|2FZS|N Chain N, Crystal Structure Of E. Coli Clpp With A Peptide Chloromethyl Ketone Covalently Bound At The Active Site Length = 193 Score = 43.8 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 28 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 88 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 142 ------------------------ILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAP 177 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 178 EAVEYGLVDSILT 190 >gi|237800698|ref|ZP_04589159.1| putative inner membrane peptidase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023557|gb|EGI03614.1| putative inner membrane peptidase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 218 Score = 43.8 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 8/142 (5%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGG 78 + V + G I+ S + I + ++ D +++ L S GG Sbjct: 79 ALKKEKKQAETKARVYVLDFDGDIKASATESMRHEITALLTLATDKD--EVVLRLESGGG 136 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 ++ + +++ +T ++AAS GY+++C N I++A +++GSIGV+ Q Sbjct: 137 MVHSYGLASSQLARIRQAGIPLTVCIDKVAASGGYMMACIGNKIISAPFAILGSIGVVAQ 196 Query: 138 YPYVKPFLDKLGVSIKSVKSSP 159 P V L K + + + + Sbjct: 197 LPNVNRLLKKHDIDFEVLTAGE 218 >gi|93278470|pdb|1YG8|A Chain A, The Structure Of A V6a Variant Of Clpp. gi|93278471|pdb|1YG8|B Chain B, The Structure Of A V6a Variant Of Clpp. gi|93278472|pdb|1YG8|C Chain C, The Structure Of A V6a Variant Of Clpp. gi|93278473|pdb|1YG8|D Chain D, The Structure Of A V6a Variant Of Clpp. gi|93278474|pdb|1YG8|E Chain E, The Structure Of A V6a Variant Of Clpp. gi|93278475|pdb|1YG8|F Chain F, The Structure Of A V6a Variant Of Clpp. gi|93278476|pdb|1YG8|G Chain G, The Structure Of A V6a Variant Of Clpp. gi|93278477|pdb|1YG8|H Chain H, The Structure Of A V6a Variant Of Clpp. gi|93278478|pdb|1YG8|I Chain I, The Structure Of A V6a Variant Of Clpp. gi|93278479|pdb|1YG8|J Chain J, The Structure Of A V6a Variant Of Clpp. gi|93278480|pdb|1YG8|K Chain K, The Structure Of A V6a Variant Of Clpp. gi|93278481|pdb|1YG8|L Chain L, The Structure Of A V6a Variant Of Clpp. gi|93278482|pdb|1YG8|M Chain M, The Structure Of A V6a Variant Of Clpp. gi|93278483|pdb|1YG8|N Chain N, The Structure Of A V6a Variant Of Clpp. gi|93278484|pdb|1YG8|O Chain O, The Structure Of A V6a Variant Of Clpp. gi|93278485|pdb|1YG8|P Chain P, The Structure Of A V6a Variant Of Clpp. gi|93278486|pdb|1YG8|Q Chain Q, The Structure Of A V6a Variant Of Clpp. gi|93278487|pdb|1YG8|R Chain R, The Structure Of A V6a Variant Of Clpp. gi|93278488|pdb|1YG8|S Chain S, The Structure Of A V6a Variant Of Clpp. gi|93278489|pdb|1YG8|T Chain T, The Structure Of A V6a Variant Of Clpp. gi|93278490|pdb|1YG8|U Chain U, The Structure Of A V6a Variant Of Clpp. gi|93278491|pdb|1YG8|V Chain V, The Structure Of A V6a Variant Of Clpp. gi|93278492|pdb|1YG8|W Chain W, The Structure Of A V6a Variant Of Clpp. gi|93278493|pdb|1YG8|X Chain X, The Structure Of A V6a Variant Of Clpp. gi|93278494|pdb|1YG8|Y Chain Y, The Structure Of A V6a Variant Of Clpp. gi|93278495|pdb|1YG8|Z Chain Z, The Structure Of A V6a Variant Of Clpp. gi|93278496|pdb|1YG8|AA Chain a, The Structure Of A V6a Variant Of Clpp. gi|93278497|pdb|1YG8|BB Chain b, The Structure Of A V6a Variant Of Clpp Length = 193 Score = 43.8 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 28 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 88 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 142 ------------------------ILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAP 177 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 178 EAVEYGLVDSILT 190 >gi|282883083|ref|ZP_06291683.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus lacrimalis 315-B] gi|300813694|ref|ZP_07094016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297060|gb|EFA89556.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus lacrimalis 315-B] gi|300512236|gb|EFK39414.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 194 Score = 43.8 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I G++ D + ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IIFASGEVNDTMADLIVAQLLFLESEDPNKDIQLYINSPGGSVSAGLAIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S A A S + + Sbjct: 89 STICIGMAASMGAILLSSGAKGKRFALPNSDIMIHQPSGGTQGM---------------- 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 +Q+ + + + ++++++ +K +D W Sbjct: 133 --------------ATDIQITAEKILKTRKSLNQILAKNTGQKLEKIERDADRDFWLDAN 178 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 179 EAKEYGLIDKV 189 >gi|168204793|ref|ZP_02630798.1| phage protein [Clostridium perfringens E str. JGS1987] gi|170663602|gb|EDT16285.1| phage protein [Clostridium perfringens E str. JGS1987] Length = 672 Score = 43.8 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 70/210 (33%), Gaps = 54/210 (25%) Query: 39 ARIAIRGQIEDSQ----------------ELIERIERISRDDSATALIVSLSSPGGSAYA 82 A I I+G I D ++I +I+ + L + ++SPGG +A Sbjct: 2 AEIEIKGDIVDDDWGRWYEWLGYSYTSPSKVINQIKAA----NGEKLTIKINSPGGDIFA 57 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 I+ +++ E+ + + A+++I A S + L Sbjct: 58 ASDIYTELRE---------YKGEIEIKITGMAASAASVIAMAGKSSMSPTAQLM------ 102 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 + +V + +V+ ++ + + Sbjct: 103 ---------VHNVSTGTWGDYRDME---------HTAEVLKNANDTIANAYMCKTGMSRE 144 Query: 203 KTLVLSDGRIW-TGAEAKKVGLIDVVGGQE 231 + L L + + + +AK++G ID + +E Sbjct: 145 EALELMNNETYLSATKAKELGFIDEIMFEE 174 >gi|119717699|ref|YP_924664.1| ClpP1 peptidase. Serine peptidase. MEROPS family S14 [Nocardioides sp. JS614] gi|119538360|gb|ABL82977.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nocardioides sp. JS614] Length = 195 Score = 43.8 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 66/204 (32%), Gaps = 37/204 (18%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 ++ + ++ +S +D + + ++SPGGS AG AI+ + + N + +AA Sbjct: 28 NANAICAQLLLLSAEDPEADIFLHINSPGGSVDAGMAIYDTMNYIPNDVATVG--MGLAA 85 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 S G + CA + Sbjct: 86 SMGQFLLCAGTKGKR-----YALPHARIMMHQPSSGMGG--------------------- 119 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227 + +++ + L++E ++ R +T +AK+ GL+D Sbjct: 120 --SASDIKIQAQQSLHIKKVLLELIAEHTGQTVEQIEMDADRDRWFTADQAKEYGLVD-- 175 Query: 228 GGQEEVWQSLYALGVDQSIRKIKD 251 +V +S D + KD Sbjct: 176 ----QVIKSAREAADDGRPARQKD 195 >gi|46241439|gb|AAS82919.1| capsid protein [Wolbachia phage WO] Length = 141 Score = 43.8 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P + ++++ +Q VD Y F++L++ +R + +K G + G +A ++GL D Sbjct: 1 PHEPMTSESLESLQKEVDRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59 Query: 226 VVGGQEEVWQS 236 V E Sbjct: 60 GVTTFFEFINK 70 >gi|88860444|ref|ZP_01135082.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas tunicata D2] gi|88817642|gb|EAR27459.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas tunicata D2] Length = 205 Score = 43.8 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 65/197 (32%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG AI+ + +K Sbjct: 38 VIFLTGQVEDHMANLIVAQLLFLESENPEKDIFIYINSPGGSVTAGMAIYDTMNFIKPNV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L S V L + + I S+ Sbjct: 98 STVCMGQAASMGAFLLSGGTKGKRFCLPNSRVMIHQPLGGFQGQASDFEIHAREILSI-- 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 RL++E P + +GA Sbjct: 156 ----------------------------KDKLNRLLAEHTGQPIEVISRDTDRDNFMSGA 187 Query: 217 EAKKVGLIDVVGGQEEV 233 +A + G++D V Q ++ Sbjct: 188 QAVEYGIVDAVLTQRDL 204 >gi|217958120|ref|YP_002336664.1| Clp protease [Bacillus cereus AH187] gi|217064485|gb|ACJ78735.1| Clp protease [Bacillus cereus AH187] gi|282765831|gb|ADA84954.1| Clp protease [Bacillus phage 11143] Length = 248 Score = 43.8 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 76/214 (35%), Gaps = 33/214 (15%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGS 79 ++ E + ++ + G I S+ E + R +D A + V ++S GGS Sbjct: 10 LLNLKRDIRFEAKGENEYKLTVYGSIGGWFSENNAEAVRRKIQDVKAEKIHVHINSGGGS 69 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 A+ G AI +++ +I + AASA +I+ A + I+ +++ Sbjct: 70 AFDGVAICNQLKQHNAE--IIVHIDGWAASAASVIAMAGDKIIMPSNTMMMIHQASTFEY 127 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 +K ++ + S+ + F + + Q+ Sbjct: 128 GNADLFEKTARDLRKIDSALAASYKKRFVGTDEELKQL---------------------- 165 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 L D T EA +GL D + + E+ Sbjct: 166 -------LKDETWLTAEEAVALGLADEIADEIEI 192 >gi|46241429|gb|AAS82914.1| capsid protein [Wolbachia phage WO] gi|46241447|gb|AAS82923.1| capsid protein [Wolbachia phage WO] Length = 141 Score = 43.8 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P + ++++ +Q VD Y FV+L++ +R + +K G + G +A ++GL D Sbjct: 1 PHEPMTSESLESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59 Query: 226 VVGGQEEVWQS 236 V E Sbjct: 60 GVTTFFEFINK 70 >gi|257870013|ref|ZP_05649666.1| peptidase S14 [Enterococcus gallinarum EG2] gi|257804177|gb|EEV32999.1| peptidase S14 [Enterococcus gallinarum EG2] Length = 196 Score = 43.8 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 63/197 (31%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ D +I ++ + DS + + ++SPGGS AG AIF + +K Sbjct: 29 IIMLSGQVTDDLANSIIAQLLFLDAQDSEKDIYLYINSPGGSVTAGLAIFDTMNFIKADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A + + L ++ Sbjct: 89 QTIVMGMAASMGSFLLTAGEKGKRFALPNAEIMIHQPLGGAQGQATEIEIAAR------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +++SE P + +D + T Sbjct: 142 -----------------------HILQTRERLNKILSERTGQPIEVIEKDTDRDNFMTAQ 178 Query: 217 EAKKVGLIDVVGGQEEV 233 EAK GLID + + Sbjct: 179 EAKDYGLIDEIMESNSL 195 >gi|237742125|ref|ZP_04572606.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp. 4_1_13] gi|229429773|gb|EEO39985.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp. 4_1_13] Length = 367 Score = 43.8 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 78/235 (33%), Gaps = 47/235 (20%) Query: 30 HVEDNSPHVARIAIRGQIE----------DSQELIERIERISRDDSATALIVSLSSPGGS 79 +++ S + I I G I S + +E + + + + ++SPGG Sbjct: 11 EIKNLSENTVEIRIYGTITKWADKEYGQVSSASFAKELE---NYKNVSQINLRINSPGGD 67 Query: 80 AYAGEAIFRAIQKVK--NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 + I+ ++ N + + +AASA + ++ +V +L L Sbjct: 68 VFEASTIYNLLKDFAKVNNIQITGYIDGLAASAASFLVLCASKVVMGIGALFMIHNPLTY 127 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 L K + +VK S + + +S+ Sbjct: 128 AYGNTAELQKQIQLLDTVKESILDIYCT-----------------------------KSK 158 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252 + +++ + + EA + G +D + + SL + + I+++ Sbjct: 159 LNREEIAEKMNNEKWFRANEALEAGFVDEIVEND---NSLENIKNISNELHIENY 210 >gi|326795825|ref|YP_004313645.1| ATP-dependent Clp protease proteolytic subunit [Marinomonas mediterranea MMB-1] gi|326546589|gb|ADZ91809.1| ATP-dependent Clp protease proteolytic subunit [Marinomonas mediterranea MMB-1] Length = 210 Score = 43.8 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 44 VIFLVGQVEDHMANLVVAQLLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 103 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A+ S V L Y ++ I S+K Sbjct: 104 STMCIGQAASMGALLLTAGAAGKRYCLPNSRVMIHQPLGGYQGQASDIEIHTREILSIKH 163 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 +++ P +K Sbjct: 164 ------------------------------RLNEIIAHHTGQPIEKVAEDTDRDNFMNPE 193 Query: 217 EAKKVGLIDVV 227 AK+ GLID + Sbjct: 194 SAKEYGLIDDI 204 >gi|89900933|ref|YP_523404.1| hypothetical protein Rfer_2149 [Rhodoferax ferrireducens T118] gi|89345670|gb|ABD69873.1| protein of unknown function DUF107 [Rhodoferax ferrireducens T118] Length = 488 Score = 43.8 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 71/196 (36%), Gaps = 7/196 (3%) Query: 38 VARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK--V 93 V + + G I + + + + + ++ A +++ + +PGG + I + I V Sbjct: 37 VPLLTVNGPIGPATADYIARGLHKAA-NEHAPLVVLQIDTPGGLDSSTRQIVKDILASVV 95 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 V A++ Y++ + ++A T+L + V P + + Sbjct: 96 PVAAWVAPGGARAASAGAYIVYASHVAVMAPGTNLGAATPVQMGGLPGAPQQPQPTPANP 155 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRI 212 + V P A M + +V S + L ++ R + + DG Sbjct: 156 AAPQGKASEPKDATDTVRPAADAMTRKIVHDSAAYLRSL-AQMRGRNVEWADSAVRDGVS 214 Query: 213 WTGAEAKKVGLIDVVG 228 + EA+ +ID + Sbjct: 215 LSAEEAQNQRVIDFIA 230 >gi|319788749|ref|YP_004090064.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus albus 7] gi|315450616|gb|ADU24178.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus albus 7] Length = 196 Score = 43.8 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 54/178 (30%), Gaps = 28/178 (15%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 +I ++ + D + + ++SPGGS AG AI+ IQ ++ I + A Sbjct: 44 VISQLLYLESQDPEKDIDLYINSPGGSVTAGMAIYDTIQYIRCDVNTICIGMAASMGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L S + S + L + + + + ++ K Sbjct: 104 LSSGTKGKRFSLPNSEIMIHQPLIGGGGISGQCTDVKIHSDHLVATREKLNRIL------ 157 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229 +E+ ++ T EA + GLID V Sbjct: 158 ---------------------AENSGKSIEQIAIDTERDNYLTAQEAMEYGLIDKVIT 194 >gi|183601399|ref|ZP_02962769.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium animalis subsp. lactis HN019] gi|219683456|ref|YP_002469839.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium animalis subsp. lactis AD011] gi|241191101|ref|YP_002968495.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196507|ref|YP_002970062.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium animalis subsp. lactis DSM 10140] gi|63055004|gb|AAY29040.1| predicted ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium animalis subsp. animalis ATCC 25527] gi|183219005|gb|EDT89646.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium animalis subsp. lactis HN019] gi|219621106|gb|ACL29263.1| predicted ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium animalis subsp. lactis AD011] gi|240249493|gb|ACS46433.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251061|gb|ACS48000.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178845|gb|ADC86091.1| ClpP [Bifidobacterium animalis subsp. lactis BB-12] gi|295794090|gb|ADG33625.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium animalis subsp. lactis V9] Length = 233 Score = 43.8 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 59/181 (32%), Gaps = 30/181 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D +++ ++SPGGS A AI+ +Q +K + + Sbjct: 77 TSADDIMAQLLVLESMDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 136 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + + + V + K ++ Sbjct: 137 AAAIILAAGTKGKRLMLPNARVLIHQPAIDQGFGKATDIEIQAK---------------- 180 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226 + W +++ ++ + T +EAK+ G++D Sbjct: 181 -------------EMMRMREWLENTLAKHTGQSRERISRDIEVDTFLTASEAKEYGIVDE 227 Query: 227 V 227 V Sbjct: 228 V 228 >gi|329770311|ref|ZP_08261696.1| ATP-dependent Clp protease proteolytic subunit [Gemella sanguinis M325] gi|328836764|gb|EGF86416.1| ATP-dependent Clp protease proteolytic subunit [Gemella sanguinis M325] Length = 215 Score = 43.8 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 52/183 (28%), Gaps = 31/183 (16%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + + ++ + DS + ++SPGGS AG AI+ +Q +K I + Sbjct: 41 ANSITSQLLFLEAQDSEKDIYFYINSPGGSVTAGFAIYDTMQHIKCDVVTICMGMAASMG 100 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L + A + V L ++ Sbjct: 101 AFLLAAGTIGKRYALPNAEVMIHQPLGGAQGQATEIEIAAK------------------- 141 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVG 228 + + +++++ + EA + GL+D V Sbjct: 142 -----------HILRTREKLNKILADRTGQTIKAIERDTERDNYLSAEEACEYGLVDKVM 190 Query: 229 GQE 231 E Sbjct: 191 YPE 193 >gi|288918290|ref|ZP_06412644.1| Enoyl-CoA hydratase/isomerase [Frankia sp. EUN1f] gi|288350327|gb|EFC84550.1| Enoyl-CoA hydratase/isomerase [Frankia sp. EUN1f] Length = 324 Score = 43.8 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 33/273 (12%), Positives = 74/273 (27%), Gaps = 20/273 (7%) Query: 31 VEDNSPHVARIAIRG-------QIEDSQELIERIERISRDDSATALIVSLSSPG-GSAYA 82 +D +A I + I+ + I + DD L++ + P GS Sbjct: 17 EKDPDTRIATITLDRADELNAMTIDAQHRYADLIRQAGIDDEVKVLVIRANGPNLGSGAD 76 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV-GSIGVLFQYPYV 141 + + + + A Y + + S G+ + Sbjct: 77 LPELMDIMARRGDVTMKHIVRIPEDADVEYPRTGTYRYGASNVQFYTDPSAGMRSLQDFK 136 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF-VRLVSESRNIP 200 K + ++ S + + + + R Sbjct: 137 KISILEVRGYCYGWHFYQAADADIVISAEDALFGHAAFRYAGFAARQWQWCSMMGIRKF- 195 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 ++ GR +T E ++ V +E+ + + + D + +F Sbjct: 196 ---MEMVFTGRPFTAKEMYDCDFVNAVVPFDELEAMTAKYALACARSRPTDTVFVQKTFF 252 Query: 261 CDLK------NLSISSLLEDTIPLMKQTKVQGL 287 K SI S L ++ + + +GL Sbjct: 253 EIFKQHQGEYMGSILSGLLESTGRLLRPDGEGL 285 >gi|5410518|gb|AAD43090.1| SppA [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 135 Score = 43.8 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 29/112 (25%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVY-FSWSSHVEDNSPHVARIAIRGQIEDSQ------- 51 + FV + + ++ L LV + + S+ E + + I G I D Sbjct: 19 LNFVREMVLNLFFIFLVLVGVGIWMQIGNGSNSEQTARGALLLDISGVIVDKPSTNHRLG 78 Query: 52 --------------------ELIERIERISRDDSATALIVSLSSPGGSAYAG 83 +++ I + D + T +++ L + G+ Sbjct: 79 ALGRQLFGASSDRLQENSLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPS 130 >gi|71279720|ref|YP_268677.1| enoyl-CoA hydratase/isomerase family protein [Colwellia psychrerythraea 34H] gi|71145460|gb|AAZ25933.1| enoyl-CoA hydratase/isomerase family protein [Colwellia psychrerythraea 34H] Length = 270 Score = 43.8 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 71/240 (29%), Gaps = 30/240 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + L RI S +D ++++ G ++ ++++ RK Sbjct: 39 RALYGRIREASENDDIRVIVITGE---GGVFSAG---HDLKEMSGRKE------------ 80 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +++ L P V + + V Sbjct: 81 -----HCEPDNEKRVKAVLDDCTQLMMSLIKSPKAIIACVQGTASAAGCQ-LVSMCDLAV 134 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS-DGRIWTGAEAKKVGLIDVVGG 229 + V+ LV RN+ + ++ G +++ +A + GL++ V Sbjct: 135 TQDQAKFCAPGVNIGTFCTTPLVGIGRNMHRKHAMEIALTGDMFSAEDAMRFGLVNKVVK 194 Query: 230 QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 E++ L + + + K ++ I +ED Q +Q + + Sbjct: 195 IEDLKNETEKLANKIAQKSAVGIHSGKLAFYQQ-----IEESIEDAYTSASQAMLQAMLS 249 >gi|77360986|ref|YP_340561.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas haloplanktis TAC125] gi|110816463|sp|Q3IF46|CLPP_PSEHT RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|76875897|emb|CAI87118.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) (Caseinolytic protease) (Protease Ti)(Heat shock protein F21.5) [Pseudoalteromonas haloplanktis TAC125] Length = 205 Score = 43.8 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED+ ++ ++ + ++ + + ++SPGGS AG AI+ + +K Sbjct: 38 IIFLTGPVEDNMANLILAQMLFLESENPDKDIFLYINSPGGSVTAGMAIYDTMNFIKPDV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + + I S+ Sbjct: 98 STICVGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQASDFEIHAKEILSI-- 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 RL++E P D + Sbjct: 156 ----------------------------KDKLNRLMAEHTGQPLDVISKDTDRDNFMSAD 187 Query: 217 EAKKVGLIDVV 227 +A G++D V Sbjct: 188 QAVDYGIVDSV 198 >gi|242309637|ref|ZP_04808792.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pullorum MIT 98-5489] gi|239523638|gb|EEQ63504.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pullorum MIT 98-5489] Length = 196 Score = 43.8 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 63/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQI+D + ++ ++ + +D + + ++SPGG +G +I+ + +K Sbjct: 30 IIMLSGQIDDGIASSIVAQLLFLEAEDPQKDIYLYINSPGGVVTSGLSIYDTMNYIKPDI 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + S + L ++ Sbjct: 90 CTICIGQAASMGAFLLSCGTKGKRYSLPNSRIMIHQPLGGAQGQATDIE----------- 138 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +++ + N +K +D + + Sbjct: 139 -------------------IQAKEILRLKATLNEILAANTNQSLEKISKDTDRDFFMSAQ 179 Query: 217 EAKKVGLIDVVGG 229 EAKK GLID V Sbjct: 180 EAKKYGLIDNVLT 192 >gi|322834046|ref|YP_004214073.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rahnella sp. Y9602] gi|321169247|gb|ADW74946.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rahnella sp. Y9602] Length = 207 Score = 43.8 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + + + + ++SPGG AG +I+ +Q +K Sbjct: 42 IIFLTGQVEDHMANLIVAQMLFLEAESPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + ++ Sbjct: 102 STICMGQACSMGAFLLTAGAEGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L+++ ++ R + Sbjct: 156 ------------------------ILKVKSRMNELMAKHTGKSLEEIERDTERDRFLSAD 191 Query: 217 EAKKVGLIDVV 227 EA + GL+D V Sbjct: 192 EAVQYGLVDSV 202 >gi|34581620|ref|ZP_00143100.1| ATP-dependent clp protease proteolytic subunit [Rickettsia sibirica 246] gi|20137864|sp|Q92HM5|CLPP_RICCN RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|28263005|gb|EAA26509.1| ATP-dependent clp protease proteolytic subunit [Rickettsia sibirica 246] Length = 201 Score = 43.8 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 29/187 (15%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + ++ + + ++SPGG AG AI+ +Q +K + + A S G Sbjct: 44 IVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQ--ACSMGS 101 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L+ C + I+ +K + + Sbjct: 102 LLLCGGEKGMR-----YSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSK 156 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 Q ++ + S + EAKK GL+D + + Sbjct: 157 HTEQELKHIEKSMERDN----------------------FMSPEEAKKFGLVDNIMSSRD 194 Query: 233 VWQSLYA 239 L Sbjct: 195 AMALLAK 201 >gi|283955633|ref|ZP_06373126.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter jejuni subsp. jejuni 1336] gi|283792858|gb|EFC31634.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter jejuni subsp. jejuni 1336] Length = 194 Score = 43.8 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + ++ ++ + +D + + ++SPGG +G +I+ + +K Sbjct: 28 IIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A A S + L ++ Sbjct: 88 CTICIGQAASMGAFLLSCGAEGKRFALPNSRIMIHQPLGGARGQATDIE----------- 136 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +++++ K ++ + + Sbjct: 137 -------------------IQAKEILRLKTILNDILAKNTKQKVTKIAKDTERDFFMSAQ 177 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 178 EAKEYGLIDKV 188 >gi|159043937|ref|YP_001532731.1| ATP-dependent Clp protease proteolytic subunit [Dinoroseobacter shibae DFL 12] gi|189082456|sp|A8LJA8|CLPP_DINSH RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|157911697|gb|ABV93130.1| endopeptidase Clp [Dinoroseobacter shibae DFL 12] Length = 208 Score = 43.8 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 59/190 (31%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G + D ++ ++ + ++ + + + ++SPGG +G +I+ +Q +K + Sbjct: 37 IVFVNGPVHDGMSQLVVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + AAS G L+ A + Sbjct: 97 STLVVGQ--AASMGSLLLTAGEKGMR-----FSLPNSRIMVHQPSGGYQG---------- 139 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + ++ K + + ++ V L + Sbjct: 140 --QATDIMIHAQETQKLKDRLNQIYVKHTGQPLKKV----------VDALERDNFMDAEQ 187 Query: 218 AKKVGLIDVV 227 AK+ GLID + Sbjct: 188 AKEWGLIDEI 197 >gi|304320978|ref|YP_003854621.1| fatty oxidation complex subunit alpha [Parvularcula bermudensis HTCC2503] gi|303299880|gb|ADM09479.1| fatty oxidation complex, alpha subunit [Parvularcula bermudensis HTCC2503] Length = 737 Score = 43.8 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 30/266 (11%), Positives = 75/266 (28%), Gaps = 30/266 (11%) Query: 30 HVEDNSPHVARIAIR--GQIED--SQELIERIERISRD----DSATALIVSLSSPGGSAY 81 + +S +A + I GQ + +Q+L+E E+++ D D L++ G Sbjct: 7 SFDVDSDGIALLTIDLPGQSMNVWNQDLVEDFEKMADDFISNDEIKGLVIQSGKDTGFLA 66 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGY----LISCASNIIVAAETSLVGSIGVLFQ 137 + I + + + + + V Sbjct: 67 GADL--NMISMIPPDADPQFIFDQNYRLQTILRKLETGGKPAKELEKNLAKAKPVAVAVD 124 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 + ++ + V S K + + + Sbjct: 125 GLALGGGMELVLAGHYKVASDSGKTQFGQPEVLVGLIPGAGGTQRIMRLAGVQNAIEIC- 183 Query: 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 + G+ +AK++GLID + ++E+ ++ K+ K+ Sbjct: 184 ----------TQGKNMDAEKAKRLGLIDEIAPKDEIVAKAKEW--VKANPKVVQPWDQKS 231 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTK 283 + + N ++ +P+ Sbjct: 232 F---KIPNGGGGAMNPKIVPIFAGAS 254 >gi|110680063|ref|YP_683070.1| ATP-dependent Clp protease proteolytic subunit [Roseobacter denitrificans OCh 114] gi|116243162|sp|Q165F9|CLPP_ROSDO RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|109456179|gb|ABG32384.1| Clp protease, putative [Roseobacter denitrificans OCh 114] Length = 208 Score = 43.8 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 62/190 (32%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ A + + ++SPGG +G +I+ +Q +K + Sbjct: 37 IIFLNGPVHDGMSSLIVAQLLHLEAENPAKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + + S V Y Sbjct: 97 STLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMVHQPSGGYQG----------------- 139 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + K + ++ ++ V L + E Sbjct: 140 --QATDIMIHAAETQKLKDRLNEIYVKHTGQTMKKV----------VDALERDNFMSPEE 187 Query: 218 AKKVGLIDVV 227 AK+ GLID + Sbjct: 188 AKEFGLIDEI 197 >gi|294627913|ref|ZP_06706492.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292597827|gb|EFF41985.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 208 Score = 43.8 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D + ++ ++ + D+ + + ++SPGG AG AI+ +Q +K Sbjct: 36 LIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPGGVVTAGMAIYDTMQYIKPDV 95 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S A+ A S V L + +D I ++ Sbjct: 96 STICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATDIDIHAREILTL-- 153 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 ++++ + + Sbjct: 154 ----------------------------RSRLNEILAKHTGQSLETIARDTERDNFKSAV 185 Query: 217 EAKKVGLIDVV 227 +A+ GL+D V Sbjct: 186 DAQAYGLVDQV 196 >gi|46241445|gb|AAS82922.1| capsid protein [Wolbachia phage WO] Length = 141 Score = 43.8 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P + ++++ +Q VD Y F++L++ +R + +K G + G +A ++GL D Sbjct: 1 PHEPMTSESLESLQKEVDRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59 Query: 226 VVGGQEEVWQS 236 V E Sbjct: 60 GVTTFFEFINK 70 >gi|322700293|gb|EFY92049.1| ATP-dependent Clp protease proteolytic subunit 1 [Metarhizium acridum CQMa 102] Length = 174 Score = 43.8 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 24/195 (12%), Positives = 59/195 (30%), Gaps = 24/195 (12%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 S ++ ++ + D + + ++SPGGS +G AI+ + +K+ + + + Sbjct: 2 SASIVAQLLWLESDTPEKPITMYINSPGGSVTSGMAIYDTMTYIKSPVSTVCVGGAASMA 61 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L + A S + L + I+ ++ K ++ Sbjct: 62 AILLAGGEAGKRFALPHSSIMIHQPLGGTRGQASDILIYANQIQRIREQSNKIMQYHLNK 121 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-AEAKKVGLIDVVG 228 ++ + + + EA +G+ID + Sbjct: 122 AKGTD-----------------------KYSLEEVNDMMERDKYLSVDEALDLGVIDGIL 158 Query: 229 GQEEVWQSLYALGVD 243 + + D Sbjct: 159 TKRTDKKEGEEKKTD 173 >gi|315427239|dbj|BAJ48852.1| membrane-bound serine protease, ClpP class [Candidatus Caldiarchaeum subterraneum] Length = 422 Score = 43.8 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 38/261 (14%), Positives = 79/261 (30%), Gaps = 44/261 (16%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSP 76 + L +V +P V + I G I + IER A+++++++ Sbjct: 3 IAALLLVCSVLLLSSYSETPQVLYLTIDGYISSGTAM--YIERTLASSRYEAVVITINTL 60 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GGSA A I AI++ +L +L Sbjct: 61 GGSADAMLRIVEAIERSPTPIIGFVYP-------------------VGGKALSAGTYILM 101 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + + L S + V + + V + + + ++ES Sbjct: 102 STHFAAMAPETLIGSAQPVAGGEP----------------VTESKVLNFFAEKMGTLAES 145 Query: 197 RNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 R D+ + + + + + A + GLI+ V + L R ++ Sbjct: 146 RGRNRDEAVKTVLENKNFNPSSALEAGLIEAVAS------DMEELLALADGRTVRTVTGE 199 Query: 256 KNYWFCDLKNLSISSLLEDTI 276 K I + +++ Sbjct: 200 KTLNLRSAVLTEIRPGVTESL 220 >gi|15616126|ref|NP_244431.1| ATP-dependent Clp protease proteolytic subunit [Bacillus halodurans C-125] gi|11386690|sp|Q9K709|CLPP1_BACHD RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; AltName: Full=Endopeptidase Clp 1 gi|10176188|dbj|BAB07283.1| ATP-dependent Clp protease proteolytic subunit [Bacillus halodurans C-125] Length = 194 Score = 43.8 bits (101), Expect = 0.033, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IIMLGTAIDDNVANSIVAQLLFLQAEDPDKDISLYINSPGGSITAGMAIYDTMQYIKPNV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A S V L ++ Sbjct: 89 STICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGTRGQASDIEIHTRR------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + R+++E P ++ T Sbjct: 143 ------------------------ILEMRETLNRILAERTGQPLEQIAKDTDRDNFMTAE 178 Query: 217 EAKKVGLIDVV 227 +A++ GLID V Sbjct: 179 KAREYGLIDKV 189 >gi|88855133|ref|ZP_01129798.1| ATP-dependent Clp protease proteolytic subunit [marine actinobacterium PHSC20C1] gi|88815661|gb|EAR25518.1| ATP-dependent Clp protease proteolytic subunit [marine actinobacterium PHSC20C1] Length = 224 Score = 43.8 bits (101), Expect = 0.033, Method: Composition-based stats. Identities = 23/184 (12%), Positives = 60/184 (32%), Gaps = 27/184 (14%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D +++ ++SPGGS A AI+ +Q ++ + + Sbjct: 60 ASADDVMAQLLVLESQDPDRDIVMYINSPGGSFTAMTAIYDTMQYIRPHIQTVVLGQAAS 119 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A +A + + D + + ++ Sbjct: 120 AAAVITAGGTKGKRLALPNARIMIHQPAGGSEGSSQASDIEIQAREILRM---------- 169 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 +++ + + V++ + +I + EA + GLID V Sbjct: 170 -------RTWLEETLSHHSNRTAEQVNK----------DIERDKILSATEAVEYGLIDQV 212 Query: 228 GGQE 231 Sbjct: 213 LTSR 216 >gi|307129927|ref|YP_003881943.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Dickeya dadantii 3937] gi|306527456|gb|ADM97386.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Dickeya dadantii 3937] Length = 207 Score = 43.4 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + S V L + ++ Sbjct: 102 STICMGQAASMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L+++ P + R + A Sbjct: 156 ------------------------ILKVKARMNELMAKHTGQPLEAIERDTERDRFLSAA 191 Query: 217 EAKKVGLIDVVGGQEE 232 EA GL+D V E Sbjct: 192 EAVDYGLVDSVLTHRE 207 >gi|254492068|ref|ZP_05105244.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylophaga thiooxidans DMS010] gi|224462732|gb|EEF79005.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylophaga thiooxydans DMS010] Length = 212 Score = 43.4 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED ++ ++ + ++ + + ++SPGG+ AG AI+ +Q VK Sbjct: 43 VIFLVGPVEDQMANLIVAQLLFLESENPDKDIHLYINSPGGAVTAGMAIYDTMQFVKPNV 102 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S + L + D I S+ Sbjct: 103 STLCIGQAASMGAVLLAGGAEGKRHCLPNSRIMVHQPLGGFQGQASDFDIHAKEILSI-- 160 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 +++ + G Sbjct: 161 ----------------------------RDRLNGILAHHTGQDIEAIRRDTDRDNFMNGE 192 Query: 217 EAKKVGLIDVVGGQE 231 +A + GLID V Sbjct: 193 QALEYGLIDSVLTSR 207 >gi|118594831|ref|ZP_01552178.1| Peptidase S14, ClpP [Methylophilales bacterium HTCC2181] gi|118440609|gb|EAV47236.1| Peptidase S14, ClpP [Methylophilales bacterium HTCC2181] Length = 209 Score = 43.4 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 62/195 (31%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G ++D ++ ++ + ++ + + ++SPGGS AG AI+ +Q +K Sbjct: 41 VVFLVGPVDDMTANVVVAQLLFLEAENPDKDISLYINSPGGSVTAGMAIYDTMQFIKPDI 100 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A+ + S V L + ++ Sbjct: 101 STLCIGQAASMGALLLTAGAAKKRFSLPNSRVMIHQPLGGFQGQASDIEIHAKE------ 154 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + ++++E +K + Sbjct: 155 ------------------------ILYLKEKLNKIMAEHSGQSLEKVSKDTDRDNFMSAK 190 Query: 217 EAKKVGLIDVVGGQE 231 +A + GLID V Sbjct: 191 DAMEYGLIDKVISSR 205 >gi|57237197|ref|YP_178209.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter jejuni RM1221] gi|86149593|ref|ZP_01067823.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter jejuni subsp. jejuni CF93-6] gi|86151504|ref|ZP_01069719.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter jejuni subsp. jejuni 260.94] gi|86153638|ref|ZP_01071841.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597431|ref|ZP_01100666.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter jejuni subsp. jejuni 84-25] gi|148926357|ref|ZP_01810041.1| ATP-dependent clp protease proteolytic subunit [Campylobacter jejuni subsp. jejuni CG8486] gi|153951283|ref|YP_001397440.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter jejuni subsp. doylei 269.97] gi|157414501|ref|YP_001481757.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter jejuni subsp. jejuni 81116] gi|205356561|ref|ZP_03223324.1| ATP-dependent CLp protease proteolytic subunit [Campylobacter jejuni subsp. jejuni CG8421] gi|218561871|ref|YP_002343650.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315123791|ref|YP_004065795.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|9297087|sp|P54413|CLPP_CAMJE RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|67460171|sp|Q5HWX6|CLPP_CAMJR RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|166201811|sp|A7H1R0|CLPP_CAMJD RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|172047014|sp|A8FJZ3|CLPP_CAMJ8 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|57166001|gb|AAW34780.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter jejuni RM1221] gi|85839861|gb|EAQ57120.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter jejuni subsp. jejuni CF93-6] gi|85841851|gb|EAQ59098.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter jejuni subsp. jejuni 260.94] gi|85842599|gb|EAQ59811.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter jejuni subsp. jejuni HB93-13] gi|88190492|gb|EAQ94466.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter jejuni subsp. jejuni 84-25] gi|112359577|emb|CAL34361.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844749|gb|EDK21854.1| ATP-dependent clp protease proteolytic subunit [Campylobacter jejuni subsp. jejuni CG8486] gi|152938729|gb|ABS43470.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter jejuni subsp. doylei 269.97] gi|157385465|gb|ABV51780.1| ATP-dependent clp protease proteolytic subunit [Campylobacter jejuni subsp. jejuni 81116] gi|205345566|gb|EDZ32206.1| ATP-dependent CLp protease proteolytic subunit [Campylobacter jejuni subsp. jejuni CG8421] gi|284925484|gb|ADC27836.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter jejuni subsp. jejuni IA3902] gi|307747143|gb|ADN90413.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter jejuni subsp. jejuni M1] gi|315017513|gb|ADT65606.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315057629|gb|ADT71958.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter jejuni subsp. jejuni S3] gi|315928124|gb|EFV07442.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930200|gb|EFV09315.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter jejuni subsp. jejuni 305] gi|315931999|gb|EFV10952.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter jejuni subsp. jejuni 327] Length = 194 Score = 43.4 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + ++ ++ + +D + + ++SPGG +G +I+ + +K Sbjct: 28 IIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A A S + L ++ Sbjct: 88 CTICIGQAASMGAFLLSCGAEGKRFALPNSRIMIHQPLGGARGQATDIE----------- 136 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +++++ K ++ + + Sbjct: 137 -------------------IQAKEILRLKTILNDILAKNTKQKVAKIAKDTERDFFMSAQ 177 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 178 EAKEYGLIDKV 188 >gi|300900508|ref|ZP_07118675.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 198-1] gi|300924164|ref|ZP_07140156.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 182-1] gi|300937054|ref|ZP_07151920.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 21-1] gi|300958005|ref|ZP_07170169.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 175-1] gi|300988008|ref|ZP_07178488.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 45-1] gi|300997374|ref|ZP_07181714.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 200-1] gi|301022569|ref|ZP_07186441.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 69-1] gi|301049644|ref|ZP_07196593.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 185-1] gi|301301588|ref|ZP_07207723.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 124-1] gi|301647363|ref|ZP_07247175.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 146-1] gi|309787029|ref|ZP_07681641.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella dysenteriae 1617] gi|312964538|ref|ZP_07778794.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli 2362-75] gi|312970533|ref|ZP_07784714.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli 1827-70] gi|300298581|gb|EFJ54966.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 185-1] gi|300304193|gb|EFJ58713.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 200-1] gi|300315272|gb|EFJ65056.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 175-1] gi|300355989|gb|EFJ71859.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 198-1] gi|300397450|gb|EFJ80988.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 69-1] gi|300407560|gb|EFJ91098.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 45-1] gi|300419617|gb|EFK02928.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 182-1] gi|300457885|gb|EFK21378.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 21-1] gi|300843085|gb|EFK70845.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 124-1] gi|301074508|gb|EFK89314.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 146-1] gi|308924607|gb|EFP70102.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella dysenteriae 1617] gi|310337182|gb|EFQ02320.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli 1827-70] gi|312290772|gb|EFR18649.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli 2362-75] gi|313646936|gb|EFS11393.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella flexneri 2a str. 2457T] gi|315256265|gb|EFU36233.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 85-1] gi|315289845|gb|EFU49235.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 110-3] gi|315294229|gb|EFU53580.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 153-1] gi|315299561|gb|EFU58809.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 16-3] gi|315616622|gb|EFU97239.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli 3431] gi|323153474|gb|EFZ39728.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli EPECa14] gi|323160452|gb|EFZ46400.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli E128010] gi|323164238|gb|EFZ50045.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella sonnei 53G] gi|323170523|gb|EFZ56173.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli LT-68] gi|323178294|gb|EFZ63872.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli 1180] gi|323184732|gb|EFZ70103.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli 1357] gi|323191357|gb|EFZ76620.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli RN587/1] gi|324010068|gb|EGB79287.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 57-2] gi|324010651|gb|EGB79870.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 60-1] gi|324016702|gb|EGB85921.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli MS 117-3] gi|325498272|gb|EGC96131.1| ATP-dependent Clp protease proteolytic subunit [Escherichia fergusonii ECD227] gi|327254765|gb|EGE66381.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli STEC_7v] gi|332085596|gb|EGI90760.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella dysenteriae 155-74] gi|332094593|gb|EGI99639.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella boydii 5216-82] gi|332098592|gb|EGJ03558.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella boydii 3594-74] gi|332341801|gb|AEE55135.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia coli UMNK88] gi|332760728|gb|EGJ91016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella flexneri 4343-70] gi|332761448|gb|EGJ91730.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella flexneri 2747-71] gi|332763735|gb|EGJ93973.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella flexneri K-671] gi|332768358|gb|EGJ98542.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella flexneri 2930-71] gi|333007966|gb|EGK27442.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella flexneri K-218] gi|333008123|gb|EGK27598.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella flexneri VA-6] gi|333010898|gb|EGK30324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella flexneri K-272] gi|333020699|gb|EGK39959.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella flexneri K-227] gi|333021875|gb|EGK41123.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella flexneri K-304] Length = 194 Score = 43.4 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 29 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 89 STICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 143 ------------------------ILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAP 178 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 179 EAVEYGLVDSILT 191 >gi|154492065|ref|ZP_02031691.1| hypothetical protein PARMER_01696 [Parabacteroides merdae ATCC 43184] gi|154087879|gb|EDN86924.1| hypothetical protein PARMER_01696 [Parabacteroides merdae ATCC 43184] Length = 161 Score = 43.4 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 7/121 (5%) Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG-RIWTGAEAKKVGLIDVVG 228 ++ + MQ +VDS ++ V+ESR I L+DG + EA G++D + Sbjct: 1 MSNANREQMQLLVDSYWNVMAEAVAESRGIELSTLNRLADGLEVSLAQEALDHGMVDGLL 60 Query: 229 G---QEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 ++V++ A+ + + + DLK++S S + I V Sbjct: 61 FEDQMDDVFREYGAVAKNDGQFEFVTLGQYVSQLNADLKSISSSHI---AIVYADGAIVD 117 Query: 286 G 286 G Sbjct: 118 G 118 >gi|152940719|gb|ABS44859.1| capsid protein [Wolbachia phage WO] Length = 134 Score = 43.4 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P + ++++ +Q V Y FV+L++ +R + +K G + G +A ++GL D Sbjct: 1 PHEPMTSESLESLQKEVGRLYEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59 Query: 226 VVGGQEEVWQ 235 V E Sbjct: 60 GVTTFFEFIN 69 >gi|92114168|ref|YP_574096.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chromohalobacter salexigens DSM 3043] gi|116243130|sp|Q1QVW1|CLPP_CHRSD RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|91797258|gb|ABE59397.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chromohalobacter salexigens DSM 3043] Length = 206 Score = 43.4 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 39 VIFLIGPVEDYMANLVVAQMLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 98 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A+ S + L Y ++ I ++ Sbjct: 99 STVCVGQAASMGALLLAGGAAGKRYCLPHSRMMIHQPLGGYQGQAADIEIHTKEILNI-- 156 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 ++++ + G Sbjct: 157 ----------------------------RQQLNEILAKHTGQDAETVARDTDRDNFMNGT 188 Query: 217 EAKKVGLIDVVGG 229 +A + GLID + Sbjct: 189 QAVEYGLIDAMLD 201 >gi|111221348|ref|YP_712142.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [Frankia alni ACN14a] gi|111148880|emb|CAJ60559.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [Frankia alni ACN14a] Length = 213 Score = 43.4 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 61/186 (32%), Gaps = 33/186 (17%) Query: 43 IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102 + I ++ + ++ ++ +D + + ++SPGGS AG AI+ +Q V+N ++ Sbjct: 46 VEDSIANA--ICAQLLLLNAEDPTRDIFLYINSPGGSVSAGMAIYDTMQFVENDVATVSL 103 Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 + L + A + + + Sbjct: 104 GLAASMGQFLLCAGAPGKRYSLPHARIMMHQPSGGIGG---------------------- 141 Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKV 221 + + + + + ++ P ++ SD R +T EAK Sbjct: 142 --------TASDIAIQAEQMLYTKRMMQERIAFHTGQPIEQIERDSDRDRWFTAEEAKDY 193 Query: 222 GLIDVV 227 G +D V Sbjct: 194 GFVDHV 199 >gi|261366992|ref|ZP_05979875.1| Clp protease [Subdoligranulum variabile DSM 15176] gi|282571110|gb|EFB76645.1| Clp protease [Subdoligranulum variabile DSM 15176] Length = 196 Score = 43.4 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 49/183 (26%), Gaps = 28/183 (15%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++ ++ + D + ++SPGGS G AI + +K I + Sbjct: 39 TSASVVVAQLLYLEGQDPEKDIYFYINSPGGSISDGMAIHDTMNYIKCDVSTICIGMAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 + L S A S + L + + + + Sbjct: 99 MGSFLLASGTKGKRFALPNSEILIHQPLISGGGISGQATDIQIHANHIIH---------- 148 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226 +L S+ + T +AK+ GLID Sbjct: 149 -----------------IRERMNQLYSQYTGQALETIQRDTERDNYMTAQQAKEYGLIDD 191 Query: 227 VGG 229 + Sbjct: 192 ILY 194 >gi|78223080|ref|YP_384827.1| ATP-dependent Clp protease proteolytic subunit [Geobacter metallireducens GS-15] gi|90101408|sp|Q39UH2|CLPP_GEOMG RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|78194335|gb|ABB32102.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacter metallireducens GS-15] Length = 199 Score = 43.4 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D + +I ++ + +D + + ++SPGG AG AI+ +Q +K Sbjct: 28 IIFLGGPIDDHVANLVIAQLLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMQYIKAPV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + S + L + Sbjct: 88 STICVGQAASMGALLLSGGEKGKRFSLTHSRIMIHQPLGGFQGQ---------------- 131 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + +++E+ +K ++ + +G Sbjct: 132 --------------ATDIHIHAQEILKMKKRLNEIIAENSGQALEKVEADTERDYFMSGE 177 Query: 217 EAKKVGLIDVV 227 EAK G+ID + Sbjct: 178 EAKSYGIIDAI 188 >gi|326391311|ref|ZP_08212851.1| protein of unknown function DUF107 [Thermoanaerobacter ethanolicus JW 200] gi|325992640|gb|EGD51092.1| protein of unknown function DUF107 [Thermoanaerobacter ethanolicus JW 200] Length = 442 Score = 43.4 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 39/264 (14%), Positives = 88/264 (33%), Gaps = 39/264 (14%) Query: 38 VARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95 V ++I G I + + ++ ++ A+ +++ LS+PGG + I I + + Sbjct: 33 VYVLSIDGPIVPVVADYIESGLQEAEKN-GASCIVIELSTPGGLYSTTQKIVTKI--LNS 89 Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 PV+ V A +A T + S V P + Sbjct: 90 HIPVVVYVSP-----------AGAWAGSAGTFITLSANVAAMAPGSRIGA---------- 128 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWT 214 S ++ Q + + ++E+R + + + +T Sbjct: 129 ---AHPVSMEDDSALSDVQRQKLTHDAAAWIRS----IAENRGRDPKNAEMAVIESKSFT 181 Query: 215 GAEAKKVGLIDVVGG-QEEVWQSLYALGV---DQSIRKIKDWNPPKNYWFCDLKNLSISS 270 EA L+D ++ + + L V D +I ++ P K + + + Sbjct: 182 DTEALNAHLVDFKATNLNDLLKKINGLTVKNFDGTITTLQTDGPIKYFPMSSAQKFLFAI 241 Query: 271 LLEDTIPLMKQTKVQGL-WAVWNP 293 + L+ + G+ +++P Sbjct: 242 SDPNIAYLLMSAGILGIVLELYHP 265 >gi|293392545|ref|ZP_06636865.1| ATP-dependent Clp protease proteolytic subunit [Serratia odorifera DSM 4582] gi|291424947|gb|EFE98156.1| ATP-dependent Clp protease proteolytic subunit [Serratia odorifera DSM 4582] Length = 207 Score = 43.4 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 59/193 (30%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + + + + ++SPGG AG +I+ +Q +K Sbjct: 42 IIFLTGQVEDHMANLIVAQMLFLEAESPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + S V L Y ++ Sbjct: 102 STICMGQACSMGSFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L+++ ++ R T Sbjct: 156 ------------------------ILKVKARMNELMAQHTGQSLEQIDRDTERDRFMTAE 191 Query: 217 EAKKVGLIDVVGG 229 E+ + GL+D + Sbjct: 192 ESVEYGLVDGILT 204 >gi|241205772|ref|YP_002976868.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859662|gb|ACS57329.1| Endopeptidase Clp [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 194 Score = 43.4 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 65/196 (33%), Gaps = 38/196 (19%) Query: 41 IAIRGQIED--SQELIERI--ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 I I G I +Q++ ++ + D+ + ++SPGG +G++I I+ +K + Sbjct: 29 IFIYGPINQELAQKVCSQLVALAAASDEDIR---IYVNSPGGHVESGDSIHDMIKFIKPK 85 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 +I +A A ++ + + + ++ Sbjct: 86 VWMIGTGWVASAGALIYVATPKERRLCLPNTRFLLHQPSGGTRGMASDIE---------- 135 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215 + + R+++ + P DK +D W + Sbjct: 136 --------------------IQAREIIKMNERLNRIMAAATGQPLDKIDKDTDRDYWLSA 175 Query: 216 AEAKKVGLIDVVGGQE 231 EAK+ GL+ + + Sbjct: 176 EEAKEYGLVSRIVTSQ 191 >gi|315427203|dbj|BAJ48817.1| membrane-bound serine protease, ClpP class [Candidatus Caldiarchaeum subterraneum] Length = 422 Score = 43.4 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 38/261 (14%), Positives = 79/261 (30%), Gaps = 44/261 (16%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSP 76 + L +V +P V + I G I + IER A+++++++ Sbjct: 3 IAALLLVCSVLLLSSYSETPQVLYLTIDGYISSGTAM--YIERTLASSRYEAVVITINTL 60 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GGSA A I AI++ +L +L Sbjct: 61 GGSADAMLRIVEAIERSPTPVIGFVYP-------------------VGGKALSAGTYILM 101 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + + L S + V + + V + + + ++ES Sbjct: 102 STHFAAMAPETLIGSAQPVAGGEP----------------VTESKVLNFFAEKMGTLAES 145 Query: 197 RNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 R D+ + + + + + A + GLI+ V + L R ++ Sbjct: 146 RGRNRDEAVKTVLENKNFNPSSALEAGLIEAVAS------DMEELLALADGRTVRTVTGE 199 Query: 256 KNYWFCDLKNLSISSLLEDTI 276 K I + +++ Sbjct: 200 KTLNLRSAVLTEIRPGVTESL 220 >gi|154509333|ref|ZP_02044975.1| hypothetical protein ACTODO_01858 [Actinomyces odontolyticus ATCC 17982] gi|153798967|gb|EDN81387.1| hypothetical protein ACTODO_01858 [Actinomyces odontolyticus ATCC 17982] Length = 214 Score = 43.4 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 68/188 (36%), Gaps = 30/188 (15%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D + + + ++SPGGS A AI+ +Q +K + + + Sbjct: 56 ASADDVMAQLLVLESQDPDSLITMYINSPGGSFTALTAIYDTMQYIKPQIQTVCLGQAAS 115 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + + +A + V + + Sbjct: 116 AAAVLLAAGSPGKRLALPNARVLIHQPAMEGMQGQA------------------------ 151 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226 +Q++ D +D W +S+ P ++ + +I T +A + GLID Sbjct: 152 -----SDIQIVADEIDRMRAWLEDTISKHSGKPVEQVRRDIERDKILTAPQAAEYGLIDQ 206 Query: 227 VGGQEEVW 234 V + Sbjct: 207 VLESRKAL 214 >gi|325922708|ref|ZP_08184448.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas gardneri ATCC 19865] gi|325546825|gb|EGD17939.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas gardneri ATCC 19865] Length = 196 Score = 43.4 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D + ++ ++ + D+ + + ++SPGG AG AI+ +Q +K Sbjct: 24 LIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPGGVVTAGMAIYDTMQYIKPDV 83 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S A+ A S V L + +D I ++ Sbjct: 84 STICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATDIDIHAREILTL-- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 ++++ + + Sbjct: 142 ----------------------------RSRLNEILAKHTGQSLETIGRDTERDNFKSAV 173 Query: 217 EAKKVGLIDVV 227 +A+ GL+D V Sbjct: 174 DAQAYGLVDQV 184 >gi|293369840|ref|ZP_06616413.1| Clp protease [Bacteroides ovatus SD CMC 3f] gi|292635017|gb|EFF53536.1| Clp protease [Bacteroides ovatus SD CMC 3f] Length = 353 Score = 43.4 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 71/246 (28%), Gaps = 42/246 (17%) Query: 39 ARIAIRGQIE----DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 ARI ++G I E ++E + + + + ++SPGG + I I++ Sbjct: 12 ARIELKGTISKWRETEAEFTSKVEELIK-SGVKDVHIYINSPGGECFEANEIVNVIKRFP 70 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + + E + ASA I+ L V Sbjct: 71 GK--ITGEGGALVASAATYIAINCTSFSMPANGLFMIHQVSGG----------------- 111 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213 + S + + + +G W Sbjct: 112 -ACGKVADIESTLEVMRKLNEHYLNAFLSKCTD------------KKKIKDAWDNGDYWM 158 Query: 214 TGAEAKKVGLIDVVGG---QEEVWQSLYALGVDQSIRKIKDW-NPPKNYWFCDLKNLSIS 269 + EAK+ G + V G ++ + +I D+ N K+ DL L+ Sbjct: 159 SAQEAKENGFVTEVTGKAKVDKATAQMITNCGYTGEIEITDFINNEKSKNDMDLTMLTTR 218 Query: 270 SLLEDT 275 ++ + Sbjct: 219 FGMDAS 224 >gi|323340198|ref|ZP_08080462.1| ATP-dependent Clp protease, protease subunit [Lactobacillus ruminis ATCC 25644] gi|323092389|gb|EFZ34997.1| ATP-dependent Clp protease, protease subunit [Lactobacillus ruminis ATCC 25644] Length = 197 Score = 43.4 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 59/192 (30%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D +I ++ + DS + + ++SPGGS AG AI+ + V Sbjct: 29 IIMVSGEVTDDMANAVIAQLLFLDAQDSEKDIYMYINSPGGSVSAGLAIYDTMNFVNADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ + A A S + L Sbjct: 89 QTIVMGMAASMASVLSTAGAKGKRFALPNSEIMIHQPLGGAQGQST-------------- 134 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 +Q+ + + + +++++ + T Sbjct: 135 ----------------EIQIAAEHILKTRKLINQILADHSGQDIETINKDTERDNFMTAQ 178 Query: 217 EAKKVGLIDVVG 228 +A GLID + Sbjct: 179 QAVDYGLIDGIM 190 >gi|21230439|ref|NP_636356.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769567|ref|YP_244329.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas campestris pv. campestris str. 8004] gi|25008306|sp|Q8PBY6|CLPP_XANCP RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|81304478|sp|Q4URL4|CLPP_XANC8 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|21112001|gb|AAM40280.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574899|gb|AAY50309.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas campestris pv. campestris str. 8004] Length = 208 Score = 43.4 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D + ++ ++ + D+ + + ++SPGG AG AI+ +Q +K Sbjct: 36 LIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPGGVVTAGMAIYDTMQYIKPDV 95 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S A+ A S V L + +D I ++ Sbjct: 96 STICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATDIDIHAREILTL-- 153 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 ++++ + + Sbjct: 154 ----------------------------RSRLNEILAKHTGQSLETIARDTERDNFKSAV 185 Query: 217 EAKKVGLIDVV 227 +A+ GL+D V Sbjct: 186 DAQAYGLVDHV 196 >gi|325970910|ref|YP_004247101.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta sp. Buddy] gi|324026148|gb|ADY12907.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta sp. Buddy] Length = 202 Score = 43.4 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 64/192 (33%), Gaps = 33/192 (17%) Query: 40 RIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I ++ ++ ++ + +DS + + ++SPGGS AG AI+ IQ + + Sbjct: 37 IIFLDGEIHDANADLVVAQMLFLDSEDSTKDISLYINSPGGSVTAGLAIYDTIQYLHCKV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L S + ++ V Sbjct: 97 QTICMGQAASMAALLLASGSEGKRFMLPSARVMIHQPWGGVEGQST-------------- 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + + + ++++ + +++ + + Sbjct: 143 ----------------DISIHAKEISRLKKLTIDIIAQHTHKSFEQVSKDVERDFFLSSD 186 Query: 217 EAKKVGLIDVVG 228 +A G++D V Sbjct: 187 DAVSYGIVDSVM 198 >gi|224438107|ref|ZP_03659042.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter cinaedi CCUG 18818] gi|313144547|ref|ZP_07806740.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter cinaedi CCUG 18818] gi|313129578|gb|EFR47195.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter cinaedi CCUG 18818] Length = 196 Score = 43.4 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 25/193 (12%), Positives = 59/193 (30%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + ++ ++ + +D + ++SPGG + +I+ + +++ Sbjct: 30 IILLSGEINDHIASSIVAQLLFLEAEDPDKDINFYINSPGGVITSAFSIYDTMNYIRSDI 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I +A A L S + S + L ++ Sbjct: 90 STICIGQAASAGAFLLSSGTKGKRFSLPNSRIMIHQPLGGAQGQATDIE----------- 138 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + +++E+ + +G Sbjct: 139 -------------------IQAKEILRLKKILNEIMAENTGQSVENITQDTERDFFMSGE 179 Query: 217 EAKKVGLIDVVGG 229 EAK GL+D + Sbjct: 180 EAKDYGLVDKILT 192 >gi|189200839|ref|XP_001936756.1| ATP-dependent Clp protease proteolytic subunit 1 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983855|gb|EDU49343.1| ATP-dependent Clp protease proteolytic subunit 1 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 244 Score = 43.4 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 61/200 (30%), Gaps = 31/200 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+++D S + ++ + D+ + + ++SPGGS AG AI+ + +K+ Sbjct: 68 IICLNGEVDDFMSANAVAQLLFLEADNPEKPISMYINSPGGSVSAGLAIYDTMNYIKSPV 127 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L A + V + + K + Sbjct: 128 STICMGIAASMGSLLLAGGAEGQRYILPHARVMIHQPSG---GYRGKASDIADHAKEILR 184 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 K S + ++ + + Sbjct: 185 IRDKLNRIYQSHLT-------------------------TKRSLEEIEKYMERDYYMDAQ 219 Query: 217 EAKKVGLIDVVGGQEEVWQS 236 EA + G++D + + E+ Sbjct: 220 EAVEFGIVDKILEKREISAK 239 >gi|167646810|ref|YP_001684473.1| ATP-dependent Clp protease proteolytic subunit [Caulobacter sp. K31] gi|189082451|sp|B0SZQ2|CLPP_CAUSK RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|167349240|gb|ABZ71975.1| Endopeptidase Clp [Caulobacter sp. K31] Length = 208 Score = 43.4 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 27/202 (13%), Positives = 65/202 (32%), Gaps = 34/202 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + ++ + ++ + + ++SPGG AG AI+ +Q +K+ Sbjct: 37 IIFLTGPVEDGMASLICAQLLFLESENPKKEIAMYINSPGGVVTAGLAIYDTMQYIKSPV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + A +A + + + ++ Sbjct: 97 STVCMGMAASMGSLLLQAGAPGHRIALPNARIMVHQPSGGFRGQASDIE----------- 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + Y++ L + Sbjct: 146 -------------------RHAEDIIKTKRRLNEIYVKHTGRTYEEVEKTLDRDHFMSAE 186 Query: 217 EAKKVGLIDVVG-GQEEVWQSL 237 EAK GLID + ++E + Sbjct: 187 EAKAWGLIDHINESRDEADEKA 208 >gi|332707230|ref|ZP_08427283.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lyngbya majuscula 3L] gi|332353964|gb|EGJ33451.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lyngbya majuscula 3L] Length = 200 Score = 43.4 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 56/176 (31%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + DD + + ++SPGGS AG IF + +V I + A Sbjct: 42 VVAQLLFLEADDQEKDIYLYINSPGGSVTAGMGIFDTMNQVAPDVCTICVGLAASMGAFL 101 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A ++ S + L ++ Sbjct: 102 LSAGAKGKRMSLPHSRIMIHQPLGGAQGQASDIE-------------------------- 135 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 + + ++E P +K ++ + + EAK GLID V Sbjct: 136 ----IQAKEILYHKQQLNNYLAEHTGQPLEKIQEDTERDFFMSATEAKDYGLIDQV 187 >gi|153813468|ref|ZP_01966136.1| hypothetical protein RUMOBE_03888 [Ruminococcus obeum ATCC 29174] gi|149830412|gb|EDM85504.1| hypothetical protein RUMOBE_03888 [Ruminococcus obeum ATCC 29174] Length = 193 Score = 43.4 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 31/181 (17%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++ ++ + +D + + + ++SPGGS AG AI+ ++ +K I + Sbjct: 39 VSASVIVAQLLFLEAEDPSKDIQLYINSPGGSVTAGMAIYDTMKYIKCDVSTICLGMAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L A S + + + Sbjct: 99 MGAFLLAGGTKGKRFALPHSTIMIHQPSGGAQGQATEIQIVAD----------------- 141 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDV 226 + + +++E+ PY+ +D + T EAK GLID Sbjct: 142 -------------HIAQTKRTLNEILAENTGQPYEVVEKDTDRDNYMTAEEAKAYGLIDG 188 Query: 227 V 227 V Sbjct: 189 V 189 >gi|29654072|ref|NP_819764.1| ATP-dependent endopeptidase clp proteolytic subunit [Coxiella burnetii RSA 493] gi|161830533|ref|YP_001596950.1| ATP-dependent Clp protease proteolytic subunit [Coxiella burnetii RSA 331] gi|60389768|sp|Q83DJ2|CLPP_COXBU RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|189082454|sp|A9NDG0|CLPP_COXBR RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|29541338|gb|AAO90278.1| ATP-dependent endopeptidase clp proteolytic subunit [Coxiella burnetii RSA 493] gi|161762400|gb|ABX78042.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coxiella burnetii RSA 331] Length = 195 Score = 43.4 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 64/192 (33%), Gaps = 35/192 (18%) Query: 40 RIAIRGQIED---SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 I + GQ+ED + + + + S + + + + ++SPGG+ + AI+ +Q VK Sbjct: 30 VIFLVGQVEDHMANLAIAQMLFLESENPN-KDINLYINSPGGAVTSAMAIYDTMQFVKPD 88 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 + +A A L A S V VL Y + + V Sbjct: 89 VRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVMIHQVLGGYQGQGTDIQIHAKQTQRVS 148 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215 +++++ ++ ++ + T Sbjct: 149 ------------------------------DQLNQILAKHTGKDIERVEKDTNRDYFLTP 178 Query: 216 AEAKKVGLIDVV 227 EA + GLID + Sbjct: 179 EEAVEYGLIDSI 190 >gi|313110498|ref|ZP_07796383.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas aeruginosa 39016] gi|310882885|gb|EFQ41479.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas aeruginosa 39016] Length = 213 Score = 43.4 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 67/196 (34%), Gaps = 31/196 (15%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 45 IIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYINSPGGSVTAGMSIYDTMQFIKPNV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L A+ S + L + ++ I + Sbjct: 105 STTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAKEILFI-- 162 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + ++ + +++ R +G E Sbjct: 163 -----------------KERLNQILAHHTRQPLDVIA----------RDTDRDRFMSGDE 195 Query: 218 AKKVGLIDVVGGQEEV 233 A K GLID V Q ++ Sbjct: 196 AVKYGLIDKVMTQRDL 211 >gi|291542673|emb|CBL15783.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus bromii L2-63] Length = 193 Score = 43.4 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 55/181 (30%), Gaps = 31/181 (17%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++ ++ + D + + ++SPGGS G AIF + +K I + Sbjct: 39 ASASVVVAQLLYLESKDPTKDISLYINSPGGSVTDGFAIFDTMNYIKCDVSTICMGMAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L + A +A S + ++ Sbjct: 99 MGAFLLAAGAKGKRLALPNSDIMIHQPSGGAQGQATDME--------------------- 137 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226 + + ++++++ P D + T +A + GLID Sbjct: 138 ---------IHTRHILDMKKRLNQILADNTGQPIDVIAKDTNRDNFMTAQQALEYGLIDK 188 Query: 227 V 227 V Sbjct: 189 V 189 >gi|227485897|ref|ZP_03916213.1| peptidase S14, ClpP [Anaerococcus lactolyticus ATCC 51172] gi|227236130|gb|EEI86145.1| peptidase S14, ClpP [Anaerococcus lactolyticus ATCC 51172] Length = 380 Score = 43.4 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 72/236 (30%), Gaps = 43/236 (18%) Query: 30 HVEDNSPHVARIAIRGQIED----------SQELIERIERISRDDSATALIVSLSSPGGS 79 + +A + I G I D + + + ++D LI+ ++S GG Sbjct: 11 NFAIQEEGIAEVTIYGNISDKIDWELGEINPEFFSSDLAYLEQED-INTLIIRINSAGGD 69 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 +A AI+ +++ K +K V + A+ II A + + Sbjct: 70 VFAATAIYSRLKEFKAKKIV---------KIDGWAASAATIIAMAGDEIEIAPNGSLMIH 120 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 L+ + +K +++ + Sbjct: 121 DPLFGLEGYFNAKDLIKYIEQ---------------------LETIKKSIINAYKTKTGK 159 Query: 200 PYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQE-EVWQSLYALGVDQSIRKIKDWN 253 ++ L + W TG EA G D + +E +V + + + D+ Sbjct: 160 TEEELAQLMEAETWYTGQEAVDAGFCDRLMFEEADVAATADGQIKVNGVLMVSDFK 215 >gi|157964626|ref|YP_001499450.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia massiliae MTU5] gi|157844402|gb|ABV84903.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia massiliae MTU5] Length = 216 Score = 43.4 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 55/188 (29%), Gaps = 31/188 (16%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + ++ + + ++SPGG AG AI+ +Q +K + + + + Sbjct: 59 IVAQLLFLEAENPKKDIYIYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLL 118 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + + S + Y ++ +K Sbjct: 119 LCGGEQGMRYSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIK---------------- 162 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQE 231 L S+ + + EAKK GL+D + Sbjct: 163 --------------RLLNELYSKHTGQELKHIEKSMERDNFMSPEEAKKFGLVDNIISSR 208 Query: 232 EVWQSLYA 239 +V L Sbjct: 209 DVIALLAK 216 >gi|126732556|ref|ZP_01748354.1| Protease subunit of ATP-dependent Clp protease [Sagittula stellata E-37] gi|126707002|gb|EBA06070.1| Protease subunit of ATP-dependent Clp protease [Sagittula stellata E-37] Length = 197 Score = 43.4 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 62/194 (31%), Gaps = 31/194 (15%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G + D ++ ++ + ++ + + + ++SPGG +G +I+ +Q +K + Sbjct: 24 IVFLNGPVHDGMSSLVVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 83 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + A+ + + S + Y Sbjct: 84 STLVVGQAASMGSLLLTAGAAGMRFSLPNSRIMVHQPSGGYQG----------------- 126 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + +E K + + ++ V L + Sbjct: 127 --QATDIMIHAEETIKLKRRLNEIYVRHTGQTYEAVEA----------ALERDNFMDAEK 174 Query: 218 AKKVGLIDVVGGQE 231 AK+ GLID + Sbjct: 175 AKEWGLIDEIVTSR 188 >gi|285017388|ref|YP_003375099.1| ATP-dependent clp protease proteolytic subunit protein [Xanthomonas albilineans GPE PC73] gi|283472606|emb|CBA15111.1| probable atp-dependent clp protease proteolytic subunit protein [Xanthomonas albilineans] Length = 208 Score = 43.4 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D + ++ ++ + D+ + + ++SPGG AG AI+ +Q +K Sbjct: 36 LIFLVGPIDDHMANVVVAQLLFLEADNPEKDISLYINSPGGVVTAGMAIYDTMQYIKPDV 95 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S A+ A S V L + +D I ++ Sbjct: 96 STICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATDIDIHAREILTL-- 153 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 ++++ + + Sbjct: 154 ----------------------------RARLNEVLAKHTGQSLETIARDTERDNFKSAI 185 Query: 217 EAKKVGLIDVV 227 +A+ GL+D V Sbjct: 186 DAQAYGLVDQV 196 >gi|237745591|ref|ZP_04576071.1| ATP-dependent Clp protease [Oxalobacter formigenes HOxBLS] gi|229376942|gb|EEO27033.1| ATP-dependent Clp protease [Oxalobacter formigenes HOxBLS] Length = 207 Score = 43.4 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 62/195 (31%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + ++SPGGS AG AI+ +Q ++ + Sbjct: 42 IIFLVGPVTDQNANLIVAQLLFLESENPEKDISLYINSPGGSVSAGMAIYDTMQFIRPQV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A + S + ++ Sbjct: 102 STLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMIHQPSGGAQGQATDIEIHARE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + +++E+ P ++ + A Sbjct: 156 ------------------------ILYLRERLNGILAENTGKPVEQIARDTERDNFMSAA 191 Query: 217 EAKKVGLIDVVGGQE 231 EAK GLID V + Sbjct: 192 EAKDYGLIDEVLTRR 206 >gi|304440714|ref|ZP_07400598.1| ATP-dependent Clp protease proteolytic subunit [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370901|gb|EFM24523.1| ATP-dependent Clp protease proteolytic subunit [Peptoniphilus duerdenii ATCC BAA-1640] Length = 194 Score = 43.4 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 62/196 (31%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G+I + + ++ ++ + +D + + ++SPGGS AG AIF + +K Sbjct: 29 IIFISGEINNVTADLVVAQLLFLESEDPNKDIQIYINSPGGSVSAGFAIFDTMNYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S + L + I ++ Sbjct: 89 STICIGMAASMGAFLLAAGKKGKRFALPNSEIMIHQPLGGAQGQASDIMIHAEKIIEIRQ 148 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K +E P +K + Sbjct: 149 RINKIL------------------------------AEETGQPLEKIEHDTDRDYFLSAD 178 Query: 217 EAKKVGLIDVVGGQEE 232 EAK+ GLID V + + Sbjct: 179 EAKEYGLIDNVIRERD 194 >gi|254421271|ref|ZP_05034989.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus sp. PCC 7335] gi|196188760|gb|EDX83724.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus sp. PCC 7335] Length = 269 Score = 43.4 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 23/183 (12%), Positives = 61/183 (33%), Gaps = 31/183 (16%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + ++ ++ + +D + + ++SPGGS AG AI+ +Q+++ I + Sbjct: 106 ADSIVAQLLFLDAEDPEKDVQLYINSPGGSVTAGMAIYDTMQQIRPDVVTICFGLAASMG 165 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L A ++ ++ + ++ Sbjct: 166 AFLLSGGAKGKRMSLPSARIMIHQPSGGAQGQSADIE----------------------- 202 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228 + + ++++ + ++ + + EAK+ GLID V Sbjct: 203 -------IQAREILYLKKRLNEMLADHTGQDISRIEADTERDFFMSAEEAKEYGLIDQVV 255 Query: 229 GQE 231 ++ Sbjct: 256 SRQ 258 >gi|125591043|gb|EAZ31393.1| hypothetical protein OsJ_15521 [Oryza sativa Japonica Group] Length = 221 Score = 43.4 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 58/190 (30%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ A + + ++SPGG AG AI+ +Q +++ Sbjct: 24 IVCIHGPITDDTASLVVAQLLFLESENPAKPVHLYINSPGGVVTAGLAIYDTMQYIRSPV 83 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + ++ L + A A + V + I Sbjct: 84 TTLCIGQAASMASLLLAAGARGERRALPNARVMIHQPSGGASGQASDIAIHAKEI----- 138 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + +S R++ D E Sbjct: 139 ------------LKVRDRLNKIYAKHTSQAIDRIEQCMERDMFMD------------PEE 174 Query: 218 AKKVGLIDVV 227 A GLID V Sbjct: 175 AHDWGLIDEV 184 >gi|310779736|ref|YP_003968068.1| peptidase S14 ClpP [Ilyobacter polytropus DSM 2926] gi|309749059|gb|ADO83720.1| peptidase S14 ClpP [Ilyobacter polytropus DSM 2926] Length = 361 Score = 43.4 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 77/209 (36%), Gaps = 27/209 (12%) Query: 22 VVYFSWSSHVEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVS 72 FS + +++ I I G+I + + +E+I ++ ++V Sbjct: 6 FWCFSETGSEKNSE-----IKIFGEIVNIPCWEGDVSANSFCRELEKIEAEE----ILVR 56 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 ++SPGG + +AI+ +++ + VI + +AASA +I+ A + I+ E ++ Sbjct: 57 INSPGGDVFEAQAIYNSLKNHPAK--VIVRIDALAASAATVIAMAGDEILMPENAIFMIH 114 Query: 133 GVLF-------QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 + +D + +I +V +S + + + Sbjct: 115 NPWSWSSGEAKDFRKKAETMDTIRETIVNVYASKSTLSREEIMNKMDEESWLTSQEAFDA 174 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 L ++ + ++ GR+ Sbjct: 175 GFITEILSLKAEDSDTEEVNNFMRGRVMN 203 >gi|186681335|ref|YP_001864531.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nostoc punctiforme PCC 73102] gi|186463787|gb|ACC79588.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nostoc punctiforme PCC 73102] Length = 232 Score = 43.4 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 71/191 (37%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D+ ++ ++ + +DS + + ++SPGGS YAG AI+ IQ+++ Sbjct: 55 IIFLGTPIDDAVANSIVAQLLFLDSEDSEKDIQMYVNSPGGSVYAGMAIYDTIQQIRPDV 114 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A+ ++ S + L + + + + + Sbjct: 115 VTICFGLAASMGAFLLTAGAAGKRMSLPDSRIMIHQPLG---GAQGQAIDIEIQAREILY 171 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 K +L+S P ++ ++ + + Sbjct: 172 VKAK---------------------------LNQLMSHHTGQPLERIEADTERDFFMSAE 204 Query: 217 EAKKVGLIDVV 227 EAK GLID V Sbjct: 205 EAKNYGLIDQV 215 >gi|327398620|ref|YP_004339489.1| ATP-dependent Clp protease proteolytic subunit [Hippea maritima DSM 10411] gi|327181249|gb|AEA33430.1| ATP-dependent Clp protease proteolytic subunit [Hippea maritima DSM 10411] Length = 205 Score = 43.4 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 57/195 (29%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IIMLNGEINDDVSNVIVSQLLFLESEDPEKDIFLYINSPGGSVTAGLAIYDTMQYIKCDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S + S + L ++ Sbjct: 89 TTICIGSAASMGALLLASGTKGKRYSLPHSRIMIHQPLGGISGQATEIEIHAKE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 + ++++ ++ + Sbjct: 143 ------------------------ILRLKKLLNEILAKHTGKRLKTIEKDTERDYFMDTK 178 Query: 217 EAKKVGLIDVVGGQE 231 EA G+ID + Sbjct: 179 EALAYGIIDKIIYSR 193 >gi|168031792|ref|XP_001768404.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680329|gb|EDQ66766.1| predicted protein [Physcomitrella patens subsp. patens] Length = 201 Score = 43.4 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + + + + ++SPGG AG AI+ +Q +++ Sbjct: 24 IVCIHGPISDDTASLVVAQLLYLESEHPDKPIHLYINSPGGVVTAGLAIYDTMQYIRSPV 83 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + V + + + + Sbjct: 84 STLCVGQAASMGSLLLAAGQPGERRSLPNARVMIHQPSG---GASGQASDIAIQAREI-- 138 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 RL + Y+K + + Sbjct: 139 -------------------------LDMRARLSRLYVKHTGHTYEKIESSMERDHFMSPE 173 Query: 217 EAKKVGLIDVV 227 EAK+ GL+D V Sbjct: 174 EAKQFGLVDEV 184 >gi|291279199|ref|YP_003496034.1| membrane-bound serine protease [Deferribacter desulfuricans SSM1] gi|290753901|dbj|BAI80278.1| membrane-bound serine protease [Deferribacter desulfuricans SSM1] Length = 426 Score = 43.4 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 51/263 (19%), Positives = 97/263 (36%), Gaps = 43/263 (16%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-SQELIERIERIS 61 F + K+K ++++ + +V + S+++ I I G I + + IE+ I Sbjct: 9 FSILKMKNKFILTLFIFFILVRYGISANLCA-------IKIDGVISPVTSKFIEQ--TIK 59 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 + ++ LI+ L++PGG + I ++I ++ PVIT V A AG S Sbjct: 60 KCENKDGLILYLNTPGGLLTSTREIVQSI--FTSQIPVITVVSPPGARAGSAGSFIV--- 114 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 L + P S M+ Sbjct: 115 --------------------------LASHYAIMFEGTNIGAAHPVSIFGKDIDGDMRKK 148 Query: 182 VDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDV-VGGQEEVWQSLYA 239 +++ F++ ++E RN +K ++ D + +T EA K LID V +E+ L Sbjct: 149 IENDTIAFMKSIAEKRNRNIEKAISMVKDSKSYTAQEALKFKLIDKVVKNNQELNMYLKN 208 Query: 240 LGVDQSIRKIKDWNPPKNYWFCD 262 + D + + + F Sbjct: 209 IFNDNIQIEEIEPTQFEKLKFFL 231 >gi|320094140|ref|ZP_08025953.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp. oral taxon 178 str. F0338] gi|319978942|gb|EFW10472.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp. oral taxon 178 str. F0338] Length = 201 Score = 43.4 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D + + ++ ++ +D + + ++SPGGS AG A++ +Q +K Sbjct: 27 IIWLGGEVRDENANTICAQLLLLAAEDPDRDIYLYINSPGGSVTAGMAVYDTMQYIKPDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A + V L Sbjct: 87 VTVGMGLAASMGQFLLTAGAPGKRYITPHTRVLLHQPLGGAGG----------------- 129 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + +++ D++ + ++ ++ +D W T Sbjct: 130 -------------SATEIRINADLILGMKKELAEITAQRTGKSVEQIEADADRDHWFTAR 176 Query: 217 EAKKVGLIDVV 227 EA + G +D + Sbjct: 177 EALEYGFVDQL 187 >gi|302337810|ref|YP_003803016.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta smaragdinae DSM 11293] gi|301634995|gb|ADK80422.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Spirochaeta smaragdinae DSM 11293] Length = 205 Score = 43.4 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 57/190 (30%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I D+ ++ ++ + D + + ++SPGGS AG AI+ IQ +K Sbjct: 34 IVFLDGEINDATADLVVAQLLFLESLDPERDISLYINSPGGSVTAGLAIYDTIQYIKPDV 93 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L ++ A +S + Sbjct: 94 QTICMGQAASMAALMLTCGSTGKRFALPSSRILIHQP---------------------WG 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + S H +R L + E Sbjct: 133 GAQGQAVDIGIQAKEIVRLKQLTIRYFSQHTGKGEEVIAR--------DLERDYFLSAEE 184 Query: 218 AKKVGLIDVV 227 A G+ID V Sbjct: 185 AVAYGIIDKV 194 >gi|224419236|ref|ZP_03657242.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter canadensis MIT 98-5491] gi|253826954|ref|ZP_04869839.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter canadensis MIT 98-5491] gi|313142738|ref|ZP_07804931.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter canadensis MIT 98-5491] gi|253510360|gb|EES89019.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter canadensis MIT 98-5491] gi|313131769|gb|EFR49386.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter canadensis MIT 98-5491] Length = 196 Score = 43.4 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 63/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQI+D + ++ ++ + +D + + ++SPGG +G +I+ + +K Sbjct: 30 IIMLSGQIDDGVAASIVSQLLFLEAEDPQKDIYLYINSPGGVVTSGLSIYDTMNYIKPDI 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + S + L ++ Sbjct: 90 CTICIGQAASMGAFLLSCGTKGKRYSLPNSRIMIHQPLGGAQGQATDIE----------- 138 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +++++ N +K +D + + Sbjct: 139 -------------------IQAKEILRLKATLNEILADNTNQSLEKIAKDTDRDFFMSAK 179 Query: 217 EAKKVGLIDVVGG 229 EAK GLID + Sbjct: 180 EAKDYGLIDNILT 192 >gi|114557515|ref|XP_524757.2| PREDICTED: calcium-activated chloride channel regulator 4 isoform 2 [Pan troglodytes] Length = 919 Score = 43.4 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 74/265 (27%), Gaps = 21/265 (7%) Query: 46 QIEDSQELIERIER-----------ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I +S++ I + L++ S G + +A + Sbjct: 275 VISNSEDFKNTIPMVTPPPPPVFSLLKISQRIVCLVLDKSGSMGGKDRLNRMNQAAKHFL 334 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV-KPFLDKLGVSIK 153 + M I + + + L YP + + + Sbjct: 335 LQTVENGSWVGMVHFDSTATVVNKLIQIKSSDERNTLMAGLPTYPRGGTSICSGIKYAFQ 394 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW--FVRLVSESRNIPYDKTL--VLSD 209 + + + S + +D V ++ R+ ++ Sbjct: 395 VIGELHSQLDGSEVLLLTDGEDNTASSCIDEVKQSGAIVHFIALGRDADEAVIEMSKITG 454 Query: 210 GR-IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 G + EA+ GLID G L + + + N W D + Sbjct: 455 GSHFYVSDEAQNNGLIDAFGALTSGNTDLSQKSLQLESKGL---TLNSNPWMNDTVIID- 510 Query: 269 SSLLEDTIPLMKQTKVQGLWAVWNP 293 S++ +DT L+ + ++W+P Sbjct: 511 STVGKDTFFLITWNSLPPSISLWDP 535 >gi|307822658|ref|ZP_07652889.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylobacter tundripaludum SV96] gi|307736262|gb|EFO07108.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylobacter tundripaludum SV96] Length = 215 Score = 43.4 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 45 VIFLVGQVEDYSANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S + L Y +D I ++ Sbjct: 105 STMCIGQAASMGALLLAGGAKGKRYCLPHSRMMIHQPLGGYQGQASDIDIHAREILLIRE 164 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 K S+ P +K + Sbjct: 165 KLNKIL------------------------------SDHTGQPMEKVQQDTDRDNFLSAN 194 Query: 217 EAKKVGLIDVV 227 +A GLID V Sbjct: 195 DAVSYGLIDQV 205 >gi|295109356|emb|CBL23309.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus obeum A2-162] Length = 193 Score = 43.4 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 31/181 (17%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++ ++ + +D + + + ++SPGGS AG AI+ ++ +K I + Sbjct: 39 VSASIIVAQLLFLEAEDPSKDIQLYINSPGGSVTAGMAIYDTMKYIKCDVSTICLGMAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L A S + + + Sbjct: 99 MGAFLLAGGTKGKRYALPHSTIMIHQPSGGAQGQATEIQIVAD----------------- 141 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDV 226 + + +++E+ PY+ +D + T EAK GLID Sbjct: 142 -------------HIAQTKRTLNEILAENTGQPYEVVEKDTDRDNYMTAEEAKAYGLIDG 188 Query: 227 V 227 V Sbjct: 189 V 189 >gi|261402510|ref|YP_003246734.1| protein of unknown function DUF114 [Methanocaldococcus vulcanius M7] gi|261369503|gb|ACX72252.1| protein of unknown function DUF114 [Methanocaldococcus vulcanius M7] Length = 282 Score = 43.4 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 72/182 (39%), Gaps = 12/182 (6%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 IEDS+E++ I +D +I +PGG A I +A++ + VI + Sbjct: 72 TIEDSEEILRAIRSAPKDKPIDLII---HTPGGLVLAATQIAKALKNHPSETRVIVPHYA 128 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIG-VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 M+ G LI+ A++ I+ E +++G + L QYP ++ + Sbjct: 129 MSG--GTLIALAADKIIMDENAVLGPVDPQLGQYPAPSIVKAVKEKGVEKADDQTIILAD 186 Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL- 223 +N + + D + +S+ + + T EA+++GL Sbjct: 187 IAQKAINQVQRFVYGLLKDKYGEEKAKELSK----TLTEGR-WTHDYPITVEEARELGLD 241 Query: 224 ID 225 +D Sbjct: 242 VD 243 >gi|253579815|ref|ZP_04857083.1| clp protease [Ruminococcus sp. 5_1_39B_FAA] gi|251848814|gb|EES76776.1| clp protease [Ruminococcus sp. 5_1_39BFAA] Length = 193 Score = 43.4 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 52/176 (29%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGGS AG AI+ +Q +K I + A Sbjct: 44 IVSQLLFLEAEDPGKDIQLYINSPGGSVTAGMAIYDTMQYIKCDVSTICLGMAASMGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L A A S + + + Sbjct: 104 LAGGAKGKRFALPHSTIMIHQPSGGAQGQATEIQIVAD---------------------- 141 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227 + + L++ + P + T EAK GLID V Sbjct: 142 --------HIAQTKRTLNELLAANTGQPIEVVERDTDRDNYMTAEEAKAYGLIDGV 189 >gi|315185394|gb|EFU19166.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta thermophila DSM 6578] Length = 206 Score = 43.4 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 60/190 (31%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G+I D + ++ ++ + D + V +++PGGS AG AI+ +Q VK Sbjct: 34 IVFIDGEINDLTADLVVAQLLFLESQDPEKDISVYINTPGGSVTAGLAIYDTMQYVKPDV 93 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + +A +S + + + + Sbjct: 94 QTICLGQAASMGALLLTAGTPGKRLALPSSRILIHQPWGGVQGQATDISIQAREMVRI-- 151 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 +++ V++ L T E Sbjct: 152 -----------------KKLLIHYFAHHTGRPEEEVAQ----------DLERDYYMTPEE 184 Query: 218 AKKVGLIDVV 227 AK GLID + Sbjct: 185 AKAYGLIDDI 194 >gi|219129357|ref|XP_002184857.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217403642|gb|EEC43593.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 188 Score = 43.4 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 L+ ++ ++ +D + + ++SPGGS AG AI+ +Q V + + A Sbjct: 27 LVAQLLYLANEDPEKDITLYINSPGGSVSAGMAIYDTMQYVPCDVSTVCFGMAASMGAFL 86 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A A S + L ++ I + Sbjct: 87 LGAGAKGKRRALPNSRIMIHQPLGGAQGQAADIEIQAKEILFI----------------- 129 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 ++E + P DK D + T EA + G+ID V Sbjct: 130 -------------REVLNTYIAEYCDQPKDKIEADCDRDFFMTPEEAVEYGIIDEV 172 >gi|261405359|ref|YP_003241600.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus sp. Y412MC10] gi|329923469|ref|ZP_08278950.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Paenibacillus sp. HGF5] gi|261281822|gb|ACX63793.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus sp. Y412MC10] gi|328941269|gb|EGG37564.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Paenibacillus sp. HGF5] Length = 196 Score = 43.4 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 65/194 (33%), Gaps = 33/194 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D +I ++ ++ +D + + ++SPGGS AG I+ +Q +K Sbjct: 29 IIFLSSAIDDDVANLVIAQLLFLAAEDPEKDISLYINSPGGSVTAGMGIYDTMQLIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A E S V L Sbjct: 89 STICVGMAASMGSLLLTAGAPGKRYALENSEVMIHQPLGGIQGQ---------------- 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +Q+ D + + ++ E P +K +D + + Sbjct: 133 --------------ASDIQIHADWIIKTRQKLNQIYVERTGQPLEKIERDTDRDFFMSAE 178 Query: 217 EAKKVGLIDVVGGQ 230 EAK G+ID V Sbjct: 179 EAKAYGIIDDVLSS 192 >gi|253796902|gb|ACT35706.1| capsid protein [Wolbachia phage WO] gi|253796904|gb|ACT35707.1| capsid protein [Wolbachia phage WO] gi|253796906|gb|ACT35708.1| capsid protein [Wolbachia phage WO] Length = 141 Score = 43.4 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P + ++++ +Q VD Y FV+L++ +R + +K G + G +A ++GL D Sbjct: 1 PHEPMTSESLESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59 Query: 226 VVGGQEEVWQS 236 V E Sbjct: 60 GVTTFFEFINK 70 >gi|15892669|ref|NP_360383.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia conorii str. Malish 7] gi|15619841|gb|AAL03284.1| ATP-dependent clp protease proteolytic subunit [Rickettsia conorii str. Malish 7] Length = 216 Score = 43.4 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 29/187 (15%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + ++ + + ++SPGG AG AI+ +Q +K + + A S G Sbjct: 59 IVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQ--ACSMGS 116 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L+ C + I+ +K + + Sbjct: 117 LLLCGGEKGMR-----YSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSK 171 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 Q ++ + S + EAKK GL+D + + Sbjct: 172 HTEQELKHIEKSMERDN----------------------FMSPEEAKKFGLVDNIMSSRD 209 Query: 233 VWQSLYA 239 L Sbjct: 210 AMALLAK 216 >gi|71066496|ref|YP_265223.1| ATP-dependent Clp protease proteolytic subunit [Psychrobacter arcticus 273-4] gi|110816464|sp|Q4FQB9|CLPP_PSYA2 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|71039481|gb|AAZ19789.1| ATP-dependent Clp protease proteolytic subunit ClpP [Psychrobacter arcticus 273-4] Length = 225 Score = 43.4 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG AIF + +K Sbjct: 57 VIFLTGQVEDHMANLIVAQLLFLEAENPDKDIHLYINSPGGSVSAGLAIFDTMNFIKPEV 116 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A + V ++ Sbjct: 117 STICMGGAYSMGSFLLAAGQKGKRYALANARVMIHQPSGGAQGQATDIEINARE------ 170 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 + + +++E +K + W Sbjct: 171 ------------------------ILKTRARLNEILAERTGQSVEKIEKDVERDYWLDAK 206 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 207 EAKEYGLIDEV 217 >gi|238754235|ref|ZP_04615592.1| ATP-dependent Clp protease proteolytic subunit [Yersinia ruckeri ATCC 29473] gi|238707482|gb|EEP99842.1| ATP-dependent Clp protease proteolytic subunit [Yersinia ruckeri ATCC 29473] Length = 194 Score = 43.4 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 64/196 (32%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 29 IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + ++ Sbjct: 89 STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHARE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L+++ P ++ R + Sbjct: 143 ------------------------ILKVKSRMNELMAKHTGKPLEEIERDTERDRFLSAE 178 Query: 217 EAKKVGLIDVVGGQEE 232 E+ K GL+D + + + Sbjct: 179 ESVKYGLVDDIFNRRD 194 >gi|223994545|ref|XP_002286956.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220978271|gb|EED96597.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 260 Score = 43.4 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 67/196 (34%), Gaps = 35/196 (17%) Query: 35 SPHVARI--AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 + + + ++ + L+ ++ ++ +D + + ++SPGGS AG AI+ +Q Sbjct: 79 KDRILLLGTDVNDEVANV--LVAQLLYLANEDPEKDITLYINSPGGSVSAGLAIYDTMQF 136 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 + + + A L + A + + + L ++ I Sbjct: 137 IPCDVQTVCFGMAASMGAFLLGAGAPGKRKSLPNARIMIHQPLGGAQGQAADIEIQAKEI 196 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 VK+ K ++E + P +K +D Sbjct: 197 LFVKACLNKY------------------------------IAEYCDQPVEKIEEDTDRDF 226 Query: 213 W-TGAEAKKVGLIDVV 227 + T EA+ G+ID V Sbjct: 227 FMTPYEAQDYGIIDEV 242 >gi|156741459|ref|YP_001431588.1| endopeptidase Clp [Roseiflexus castenholzii DSM 13941] gi|156232787|gb|ABU57570.1| Endopeptidase Clp [Roseiflexus castenholzii DSM 13941] Length = 219 Score = 43.4 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 65/193 (33%), Gaps = 33/193 (17%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 I QI + ++ ++ + +D + + ++SPGGS AG AI+ +Q ++ + Sbjct: 52 PIEDQIANL--IVAQLLFLEHEDPDRDIWLYINSPGGSITAGLAIYDTMQVIRPDVATVC 109 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + + L A + S +I + Sbjct: 110 VGMAGSMATPILAGGAKGKRYSLPHS-----------------------TIHMHPAGGGA 146 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKK 220 +P E+ + + L+++ P ++ +AK+ Sbjct: 147 RGYAPDVEIMARE-------LLREQQLIRELLAKDTGQPLERIARDFDRDLFMDPQQAKE 199 Query: 221 VGLIDVVGGQEEV 233 G+ID + +E++ Sbjct: 200 YGIIDEILTREDL 212 >gi|110633884|ref|YP_674092.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mesorhizobium sp. BNC1] gi|116243115|sp|Q11I48|CLPP2_MESSB RecName: Full=ATP-dependent Clp protease proteolytic subunit 2; AltName: Full=Endopeptidase Clp 2 gi|110284868|gb|ABG62927.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chelativorans sp. BNC1] Length = 208 Score = 43.4 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ++D+ + ++ + ++ + ++SPGG +G AI+ +Q +K Sbjct: 33 IIFLNGQVDDNSAALVCAQMLHLEAENPKKEIAFYINSPGGVVSSGFAIYDTMQFIKCPV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + + + G G+ P L + + Sbjct: 93 --------------ATLCLGTAASMGSFLLMAGERGMRVALPNASIILHQPLGGFQGQA- 137 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +RL +E + D + T Sbjct: 138 -------------SDIERHAQNVMR--HKRRMIRLYAEHCGRAEEDVERTLDRDFFMTAE 182 Query: 217 EAKKVGLIDVV 227 +A++ GL+D V Sbjct: 183 DAREWGLVDHV 193 >gi|315127189|ref|YP_004069192.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas sp. SM9913] gi|315015703|gb|ADT69041.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas sp. SM9913] Length = 205 Score = 43.4 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED+ ++ ++ + ++ + + ++SPGGS AG AI+ + +K Sbjct: 38 IIFLTGQVEDNMANLILAQMLFLESENPEKDIFLYINSPGGSVTAGMAIYDTMNFIKPDV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A S V L + + I S+ Sbjct: 98 STICVGQAASMGAFLLSGGAKGKRFCLPNSRVMIHQPLGGFQGQASDFEIHAKEILSI-- 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 RL++E P D + + Sbjct: 156 ----------------------------KDKLNRLMAEHTGQPLDVVSRDTDRDNFMSAS 187 Query: 217 EAKKVGLIDVV 227 +A G++D V Sbjct: 188 QAVDYGIVDSV 198 >gi|238060619|ref|ZP_04605328.1| endopeptidase Clp [Micromonospora sp. ATCC 39149] gi|237882430|gb|EEP71258.1| endopeptidase Clp [Micromonospora sp. ATCC 39149] Length = 213 Score = 43.4 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 57/178 (32%), Gaps = 31/178 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 + ++ ++ +D + + ++SPGGS Y+G AI+ +Q + N + MAAS G Sbjct: 53 ICAQLLLLAAEDPDRDIFLWINSPGGSVYSGMAIYDTMQYIDNDVSTVA--MGMAASMGQ 110 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L+ CA + Sbjct: 111 LLLCAGTKGKR-----YALPHARIMMHQPSGGMGG-----------------------TA 142 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGG 229 + + + + + F V+ + SD R +T EA G ID V Sbjct: 143 SDIAIQAEQMLYTKRMFQERVAFHTGQTQAQIEADSDRDRWFTAQEAMDYGFIDKVIT 200 >gi|21241838|ref|NP_641420.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas axonopodis pv. citri str. 306] gi|58580656|ref|YP_199672.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae pv. oryzae KACC10331] gi|78046637|ref|YP_362812.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84622589|ref|YP_449961.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166710928|ref|ZP_02242135.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae pv. oryzicola BLS256] gi|188578371|ref|YP_001915300.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae pv. oryzae PXO99A] gi|188992776|ref|YP_001904786.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas campestris pv. campestris str. B100] gi|289664185|ref|ZP_06485766.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668776|ref|ZP_06489851.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas campestris pv. musacearum NCPPB4381] gi|294666562|ref|ZP_06731803.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325914926|ref|ZP_08177258.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas vesicatoria ATCC 35937] gi|325927441|ref|ZP_08188688.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas perforans 91-118] gi|25008307|sp|Q8PNI5|CLPP_XANAC RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|67460159|sp|Q5H434|CLPP_XANOR RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|90183187|sp|Q3BWQ1|CLPP_XANC5 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|110816521|sp|Q2P6Z0|CLPP_XANOM RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|226706557|sp|B0RTF7|CLPP_XANCB RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|226706558|sp|B2SMI3|CLPP_XANOP RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|21107218|gb|AAM35956.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas axonopodis pv. citri str. 306] gi|58425250|gb|AAW74287.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae pv. oryzae KACC10331] gi|78035067|emb|CAJ22712.1| ATP-dependent Clp protease [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84366529|dbj|BAE67687.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|167734536|emb|CAP52746.1| ATP-dependent Clp protease [Xanthomonas campestris pv. campestris] gi|188522823|gb|ACD60768.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Xanthomonas oryzae pv. oryzae PXO99A] gi|292603706|gb|EFF47116.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325538819|gb|EGD10483.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas vesicatoria ATCC 35937] gi|325542191|gb|EGD13686.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas perforans 91-118] Length = 208 Score = 43.4 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D + ++ ++ + D+ + + ++SPGG AG AI+ +Q +K Sbjct: 36 LIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPGGVVTAGMAIYDTMQYIKPDV 95 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S A+ A S V L + +D I ++ Sbjct: 96 STICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATDIDIHAREILTL-- 153 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 ++++ + + Sbjct: 154 ----------------------------RSRLNEILAKHTGQSLETIARDTERDNFKSAV 185 Query: 217 EAKKVGLIDVV 227 +A+ GL+D V Sbjct: 186 DAQAYGLVDQV 196 >gi|229541478|ref|ZP_04430538.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus coagulans 36D1] gi|229325898|gb|EEN91573.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus coagulans 36D1] Length = 196 Score = 43.4 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 65/197 (32%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D S ++ ++ + ++ + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IIMLGSAIDDNVSNSIVSQLLFLEAENPEKDIYLYINSPGGSVTAGLAIYDTMQIIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A S V L ++ Sbjct: 89 QTICVGMAASMGSVLLTAGTKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAK------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + +++S+ P + + Sbjct: 142 -----------------------HILYTRAKLNKILSDHTGQPIEVIERDTDRDNFMSAE 178 Query: 217 EAKKVGLIDVVGGQEEV 233 +AK+ GLID + ++E+ Sbjct: 179 KAKEYGLIDHIMTKKEL 195 >gi|160945107|ref|ZP_02092333.1| hypothetical protein FAEPRAM212_02626 [Faecalibacterium prausnitzii M21/2] gi|158442838|gb|EDP19843.1| hypothetical protein FAEPRAM212_02626 [Faecalibacterium prausnitzii M21/2] Length = 229 Score = 43.4 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 55/176 (31%), Gaps = 26/176 (14%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + D + + ++SPGGS AG AI +Q +K I + A Sbjct: 75 VVAQLLYLEGQDPDKDISLYINSPGGSISAGMAIHDTMQYIKCDVSTICMGMAASMGAFL 134 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L S A + + L + I + Sbjct: 135 LASGTKGKRFALPNAEIMIHQPLIGGQGGGLSGQTTDIKIHA------------------ 176 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227 + + R++SE P +K T +AK+ GLID V Sbjct: 177 -------EHMVYIRDKMNRMLSEYTGQPLEKIQQDTERDNYLTAQQAKEYGLIDEV 225 >gi|17231175|ref|NP_487723.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC 7120] gi|75909809|ref|YP_324105.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena variabilis ATCC 29413] gi|21759070|sp|Q8YQX8|CLPP2_ANASP RecName: Full=ATP-dependent Clp protease proteolytic subunit 2; AltName: Full=Endopeptidase Clp 2 gi|17132816|dbj|BAB75382.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC 7120] gi|75703534|gb|ABA23210.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena variabilis ATCC 29413] Length = 232 Score = 43.4 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D+ ++ ++ + +DS + + ++SPGGS YAG AI+ IQ+++ Sbjct: 55 IIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQLYINSPGGSVYAGMAIYDTIQQIRPDV 114 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + ++ S + L ++ I + Sbjct: 115 VTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMIHQPLGGAQGQAIDIEIQAREILYI-- 172 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +L++ P ++ +D + + Sbjct: 173 ----------------------------KAQLNQLLANHTGQPLERIEADTDRDFFMSAE 204 Query: 217 EAKKVGLIDVV 227 EAK GLID V Sbjct: 205 EAKNYGLIDQV 215 >gi|316967772|gb|EFV52155.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Trichinella spiralis] Length = 892 Score = 43.4 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 60/211 (28%), Gaps = 33/211 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D S +I ++ + + + ++SPGGS AG I+ +Q +K R Sbjct: 46 IICVMGPITDELSSLVIAQLLFLQSKSLTKPVHMYINSPGGSVTAGLGIYDTMQYIKPRI 105 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + T A S L+ + I Sbjct: 106 LIATWCIGQACSMASLLLASGTEGYRN-----CLPNARVMIHQPSGQAVGQATDIMIQAE 160 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 +K + V ++ + + + Sbjct: 161 EIIKLK----------------------RQINKLYVKHTKKPYNVIEEAMERDLFMSPED 198 Query: 218 AKKVGLIDVV----GGQEEVWQSLYALGVDQ 244 A + GLID + G + ++ L ++ Sbjct: 199 AAEFGLIDKIVNLGAGFDTLFFRLRKKYKEK 229 >gi|226529931|ref|NP_001141255.1| hypothetical protein LOC100273342 [Zea mays] gi|194703568|gb|ACF85868.1| unknown [Zea mays] Length = 304 Score = 43.4 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 56/165 (33%), Gaps = 7/165 (4%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ + + ++SPGG AG AI+ +Q ++ Sbjct: 103 IVCINGPIADDTASLVVAQLLFLESENPLKPVHLYINSPGGVVTAGLAIYDTMQYIRCPV 162 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV----LFQYPYVKPFLDKLGVSIK 153 + + + L + A A + V Q + ++ Sbjct: 163 TTLCIGQAASMGSLLLAAGAPGERRALPNARVMIHQPSGGAQGQATDIAIQAKEILKLRD 222 Query: 154 SVKSSPMKAEPSPFSEVNP-KAVQMMQDVVDSSYHWFVRLVSESR 197 + K P ++ + D ++ + V E+R Sbjct: 223 RLNKIYQKHTRQPIDKIEQCMERDLFMDPDEARDWGLIDEVIENR 267 >gi|164686707|ref|ZP_02210735.1| hypothetical protein CLOBAR_00302 [Clostridium bartlettii DSM 16795] gi|164604097|gb|EDQ97562.1| hypothetical protein CLOBAR_00302 [Clostridium bartlettii DSM 16795] Length = 193 Score = 43.4 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + ++ D+ ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IIFLSDEVNDTTASLVVAQLLFLEAEDPDKDIHLYINSPGGSVTAGMAIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A S + L ++ Sbjct: 89 STICIGMAASMGAFLLNAGAKGKRFALPNSEIMIHQPLGGAKGQATDIE----------- 137 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + +++SE P +K + Sbjct: 138 -------------------IHAKWILKIKERLNKILSERTGQPIEKIQEDTERDNFMSAQ 178 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 179 EAKEYGLIDEV 189 >gi|227431752|ref|ZP_03913779.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352435|gb|EEJ42634.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 235 Score = 43.4 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 42/243 (17%), Positives = 85/243 (34%), Gaps = 41/243 (16%) Query: 33 DNSPHVARIAIRGQIEDSQELIER------IERISRDDSATALIVSLSSPGGSAYAGEAI 86 + +VA+I I G I + E + + + + +S++S GGS + G AI Sbjct: 8 KATNNVAQIDIFGDIVSEKWFDEETSATSFRDALKELGDVSTINLSINSGGGSVFDGIAI 67 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 + ++ K + +AAS +I+ A + I S++ V + + + Sbjct: 68 YNMLKSHKATVN--VYIEGLAASIASVIAMAGDTITMRSGSMI---MVHMPWTLSQGNAE 122 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 ++ + ++ + + V + SE I D Sbjct: 123 EMRKTADTL---------------------------EKTGDSIVDIYSERTGISSDDIRN 155 Query: 207 LSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYA--LGVDQSIRKIKDWNPPKNYWFCDL 263 + + W + EA + G + +E V S+ LG ++ K K D Sbjct: 156 IMNDETWLSAEEAVEQGWATKLDKKEAVMNSVPKEILGRFSNVPKNVLARVEKKTLSQDR 215 Query: 264 KNL 266 +L Sbjct: 216 LDL 218 >gi|169831635|ref|YP_001717617.1| ATP-dependent Clp protease proteolytic subunit [Candidatus Desulforudis audaxviator MP104C] gi|169638479|gb|ACA59985.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus Desulforudis audaxviator MP104C] Length = 198 Score = 43.4 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 64/195 (32%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G IED + +I ++ + +D + + ++SPGG +G AI+ +Q ++ Sbjct: 30 IVFIGGPIEDHVANLIIAQLLFLEAEDPDKDIHLYINSPGGLVTSGMAIYDTMQYIRPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A + + L +D Sbjct: 90 STICLGQAASFGAFLLAAGTPGKRFALPYARIMMHQPLGGVQGQATEIDIHARE------ 143 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + L+++ P +K ++ + + Sbjct: 144 ------------------------ILRTKRVLNELLAKHTGQPVEKIERDTERDFFMSPE 179 Query: 217 EAKKVGLIDVVGGQE 231 +A++ G+ID V Sbjct: 180 QAREYGIIDEVITVR 194 >gi|289191994|ref|YP_003457935.1| protein of unknown function DUF114 [Methanocaldococcus sp. FS406-22] gi|288938444|gb|ADC69199.1| protein of unknown function DUF114 [Methanocaldococcus sp. FS406-22] Length = 278 Score = 43.4 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 5/151 (3%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 IEDS+E++ I D +I +PGG A A E I A+++ K + VI + Sbjct: 67 TIEDSEEILRAIRLTPEDMPIDLII---HTPGGLALASEQIALALKEHKAKTTVIIPHYA 123 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 M+ G LI+ A++ I+ + +++G + L+ + V + Sbjct: 124 MSG--GSLIALAADEIIMDKNAVMGPVDPQIGQYPAASILEAYYRKGEKVDDETLILVDI 181 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + + + + D + +++ Sbjct: 182 SKKAIKQMEEFVYELLKDKYGDEKAKEIAKK 212 >gi|238650581|ref|YP_002916433.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia peacockii str. Rustic] gi|259585964|sp|C4K1D4|CLPP_RICPU RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|238624679|gb|ACR47385.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia peacockii str. Rustic] Length = 201 Score = 43.4 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 29/187 (15%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + ++ + + ++SPGG AG AI+ +Q +K + + A S G Sbjct: 44 IVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQ--ACSMGS 101 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L+ C + I+ +K + + Sbjct: 102 LLLCGGEKGMR-----YSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSK 156 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 Q ++ + S + EAKK GL+D + + Sbjct: 157 HTEQELKHIEKSMERDN----------------------FMSPEEAKKFGLVDNIMSSRD 194 Query: 233 VWQSLYA 239 L Sbjct: 195 AMTLLAK 201 >gi|145596011|ref|YP_001160308.1| endopeptidase Clp [Salinispora tropica CNB-440] gi|145305348|gb|ABP55930.1| Endopeptidase Clp [Salinispora tropica CNB-440] Length = 213 Score = 43.4 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 58/178 (32%), Gaps = 31/178 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 + ++ ++ +D + + ++SPGGS Y+G AI+ +Q + N + MAAS G Sbjct: 53 ICAQLLLLAAEDPDRDINLWINSPGGSVYSGMAIYDTMQFIDNDVSTVA--MGMAASMGQ 110 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L+ CA + Sbjct: 111 LLLCAGTKGKR-----YALPHARIMMHQPSGGMGG-----------------------TA 142 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGG 229 + + + + + F V+ + SD R +T EA + G ID V Sbjct: 143 SDIAIQAEQMLYTKRMFQERVAFHTGQSQAQIEADSDRDRWFTAQEAMEYGFIDKVIT 200 >gi|254441469|ref|ZP_05054962.1| Clp protease [Octadecabacter antarcticus 307] gi|198251547|gb|EDY75862.1| Clp protease [Octadecabacter antarcticus 307] Length = 209 Score = 43.1 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 68/191 (35%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D ++ ++ + ++ + + ++SPGG+ ++G +I+ +Q ++ + Sbjct: 37 IIFVNGPIHDGMSQLVVAQLLHLEAENPKKEISMYINSPGGAVHSGMSIYDTMQYIRPKV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + C + + ++ G G+ F P + + + + Sbjct: 97 ST--------------LICGMAASMGSVIAVGGEKGMRFSLPNSEIMVHQPSGGSQG--- 139 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + ++ + F +L + + D W T Sbjct: 140 -------------KASDMLITARHIEQTRERFYKLYMKHTGQTHKSVEKALDRDTWMTPE 186 Query: 217 EAKKVGLIDVV 227 EAK+ G +D + Sbjct: 187 EAKEWGHLDEI 197 >gi|258514515|ref|YP_003190737.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfotomaculum acetoxidans DSM 771] gi|257778220|gb|ACV62114.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfotomaculum acetoxidans DSM 771] Length = 194 Score = 43.1 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 64/194 (32%), Gaps = 33/194 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G IED +I ++ + +D + + ++SPGG AG AI+ +Q +K Sbjct: 30 IIFIGGPIEDYTANLIIAQLLFLEAEDPEKDIHLYINSPGGVVTAGMAIYDTMQYIKPPV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + + Sbjct: 90 STICLGQAASMGSFLLAAGAPGKRFALPYARIMIHQPSGGMQGQ---------------- 133 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + +L+S+ P DK S+ + + Sbjct: 134 --------------ATDIGIHAKEILRMKEILNKLLSKHTKQPLDKITRDSERDFFMSAE 179 Query: 217 EAKKVGLIDVVGGQ 230 +AK+ G+ID + + Sbjct: 180 DAKEYGIIDQIVTR 193 >gi|220910121|ref|YP_002485432.1| hypothetical protein Cyan7425_4766 [Cyanothece sp. PCC 7425] gi|219866732|gb|ACL47071.1| protein of unknown function DUF114 [Cyanothece sp. PCC 7425] Length = 296 Score = 43.1 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 73/182 (40%), Gaps = 14/182 (7%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS++++ I D ++ +PGG A E I RA+ + + V+ + M Sbjct: 69 IEDSEQVLRAIRLTPPDVPIDLIL---HTPGGLVLATEQIARALIRHPAKVTVMVPHYAM 125 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + G +++ A++ I+ +++G + L + + + Sbjct: 126 SG--GTMLALAADEIMMDANAVLGPVDPQLGNYPAASILKVVEDKP----IGEIDDQTLI 179 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-----WTGAEAKKV 221 ++++ KA++ +Q V + + + L+ GR+ T EA ++ Sbjct: 180 MADLSRKAMRQVQRFVRTLLEDKNPVQKVAPEHIDGIIEALTTGRVTHDYPITVEEATEL 239 Query: 222 GL 223 GL Sbjct: 240 GL 241 >gi|156935010|ref|YP_001438926.1| hypothetical protein ESA_02861 [Cronobacter sakazakii ATCC BAA-894] gi|156533264|gb|ABU78090.1| hypothetical protein ESA_02861 [Cronobacter sakazakii ATCC BAA-894] Length = 194 Score = 43.1 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED ++ ++ + ++ + + ++SPGG AG +I+ +Q ++ Sbjct: 29 IIFLTGQVEDQMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIQPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + S V L Y ++ Sbjct: 89 STICMGQAASMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L+++ P ++ R + Sbjct: 143 ------------------------ILKVKARMNELMAQHTGQPLEQIERDTERDRFLSAG 178 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 179 EAVEYGLVDSIMT 191 >gi|77462189|ref|YP_351693.1| peptidase [Rhodobacter sphaeroides 2.4.1] gi|77386607|gb|ABA77792.1| probable peptidase [Rhodobacter sphaeroides 2.4.1] Length = 319 Score = 43.1 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 76/223 (34%), Gaps = 24/223 (10%) Query: 39 ARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 A + +RG + + L E + ++ + A A+++ + SPGG EA Sbjct: 75 AVVPVRGILTPNMAQYERWFGWATYHGLAETLAHLAASEDAAAIVLEIDSPGGLVCGIEA 134 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 AI KPV V +AASA Y ++ ++ IV ++ GS + + Sbjct: 135 AAEAIATAAAVKPVHALVSPLAASAAYWLASQASEIVMTPGAVAGS---IGIALTAAAHV 191 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT- 204 + + S A +Q +D + F VS R IP + Sbjct: 192 QPGANGAQIFEMSSRHARAKRPDASTEAGRAELQRSLDEAEAAFHAAVSTGRAIPAAELA 251 Query: 205 -------LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 G + A + GL D + + L A Sbjct: 252 ARLSVTDDPQDGGATFRAPAAIRRGLADRSETRAAFYARLTAR 294 >gi|323359781|ref|YP_004226177.1| protease subunit of ATP-dependent Clp protease [Microbacterium testaceum StLB037] gi|323276152|dbj|BAJ76297.1| protease subunit of ATP-dependent Clp protease [Microbacterium testaceum StLB037] Length = 220 Score = 43.1 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 58/183 (31%), Gaps = 29/183 (15%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D +I+ ++SPGGS A AI+ +Q V + + + Sbjct: 55 ASADDVMAQLLVLESQDPDRDIIMYINSPGGSFTAMTAIYDTMQYVSPQIQTVVLGQAAS 114 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A++ L + A +A + + D + + + Sbjct: 115 AASVLLAAGAPGKRLALPNARILIHQPAMGEAGHGQASDIEIQAAEIL------------ 162 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226 W ++ K + +I + EA + G++D Sbjct: 163 ----------------RMRTWLEETMARHTGQDAAKVNKDIDRDKILSSQEAMEYGIVDQ 206 Query: 227 VGG 229 V Sbjct: 207 VLT 209 >gi|207091734|ref|ZP_03239521.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori HPKX_438_AG0C1] Length = 194 Score = 43.1 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 61/191 (31%), Gaps = 34/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I DS ++ ++ + +D + + ++SPGG +G +I+ + ++ Sbjct: 29 IVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A + S + L ++ + I Sbjct: 89 STICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEI----- 143 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + ++ +D + + Sbjct: 144 --------------------------LRLKGLMNSILANSGQSLEQIAKDTDRDFYMSAK 177 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 178 EAKEYGLIDKV 188 >gi|50954515|ref|YP_061803.1| ATP-dependent Clp protease proteolytic subunit [Leifsonia xyli subsp. xyli str. CTCB07] gi|67460474|sp|Q6AFZ7|CLPP2_LEIXX RecName: Full=ATP-dependent Clp protease proteolytic subunit 2; AltName: Full=Endopeptidase Clp 2 gi|50950997|gb|AAT88698.1| ATP-dependent Clp protease proteolytic subunit [Leifsonia xyli subsp. xyli str. CTCB07] Length = 223 Score = 43.1 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 59/192 (30%), Gaps = 27/192 (14%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D +++ ++SPGGS A AI+ +Q V+ + + + Sbjct: 59 ASADDIMAQLLVLESQDPDRDIVMYINSPGGSFTAMTAIYDTMQYVRPQIQTVVLGQAAS 118 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A + A +A + + D L S + Sbjct: 119 AAAVLTAAGAPGKRLALPNARILIHQPAVGEAGHGQASDILIQSNEI------------- 165 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 LV S + I + EA K GLID V Sbjct: 166 --------------NRMRAWLEETLVKHSSRTLEQVNKDIERDNILSATEALKYGLIDQV 211 Query: 228 GGQEEVWQSLYA 239 + +L Sbjct: 212 LTSRKTLPALVK 223 >gi|256821432|ref|YP_003145395.1| hypothetical protein Kkor_0206 [Kangiella koreensis DSM 16069] gi|256794971|gb|ACV25627.1| protein of unknown function DUF107 [Kangiella koreensis DSM 16069] Length = 476 Score = 43.1 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 83/229 (36%), Gaps = 11/229 (4%) Query: 10 TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERISRDDSAT 67 Y+ LS + L S ++ ++ + G + + L+E IE + D Sbjct: 4 ALYIALSFLLLCFSAQQLHSAETNSGKRAMQLTLDGSVNPATAHFLVENIEEAAAQD-YQ 62 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV--HEMAASAGYLISCASNIIVAAE 125 +I+ +++PGG A I RAI A++ Y++ + +A Sbjct: 63 LIIIKMNTPGGLDLAMRDIIRAILSSPVPVATYVYPPGSRAASAGTYILYASHVSAMAPA 122 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA-----VQMMQD 180 T+L + V ++ + + + + +P M+ Sbjct: 123 TNLGAATPVSIGGMPSPDQPNQSEQNKEPNQDGADSEQSKDQPAQSPSQSAPSNKSAMEK 182 Query: 181 VVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVG 228 V + ++R ++ D + +G + +EA ++G+ID++ Sbjct: 183 KVINDAEAYLRSLAHYHGRNIDWVKNAVREGESLSSSEALEIGVIDLIA 231 >gi|271499597|ref|YP_003332622.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dickeya dadantii Ech586] gi|270343152|gb|ACZ75917.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dickeya dadantii Ech586] Length = 207 Score = 43.1 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 60/196 (30%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDYMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + S V L + ++ Sbjct: 102 STICMGQAASMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L+++ D R + A Sbjct: 156 ------------------------ILKVKARMNELMAKHTGQSLDVIERDTERDRFLSAA 191 Query: 217 EAKKVGLIDVVGGQEE 232 EA + GL+D V E Sbjct: 192 EAVEYGLVDSVLTHRE 207 >gi|213019666|ref|ZP_03335471.1| minor capsid protein c [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994707|gb|EEB55350.1| minor capsid protein c [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 145 Score = 43.1 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 13/110 (11%) Query: 31 VEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPG 77 V N A IAI G + +++ E IE + +++ + SPG Sbjct: 27 VNQNIEKTAVIAIHGILTKKPGAFDDFLGMTSYEKIQEEIEEALSNKDIETILLDIDSPG 86 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 G + I + + +K +I ++ A SA Y I+ ++ + + TS Sbjct: 87 GEVNGIFDLADFIYESRAKKRIIAIANDDAYSAAYAIASSAEKVFVSRTS 136 >gi|37527729|ref|NP_931074.1| ATP-dependent Clp protease proteolytic subunit [Photorhabdus luminescens subsp. laumondii TTO1] gi|60389709|sp|Q7N0L3|CLPP_PHOLL RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|36787165|emb|CAE16241.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5 (Endopeptidase Clp) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 207 Score = 43.1 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 63/196 (32%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + + ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 IIFLTGQVEDHMANLVAAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A + S V L + ++ Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAQE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + L+++ P ++ R + Sbjct: 156 ------------------------ILKVKSRMNELMAKHTGRPIEEIAKDTERDRFLSAD 191 Query: 217 EAKKVGLIDVVGGQEE 232 EA + GL+D + + Sbjct: 192 EAVEYGLVDKIFTHRD 207 >gi|315645729|ref|ZP_07898853.1| hypothetical protein PVOR_09635 [Paenibacillus vortex V453] gi|315279207|gb|EFU42517.1| hypothetical protein PVOR_09635 [Paenibacillus vortex V453] Length = 196 Score = 43.1 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 64/194 (32%), Gaps = 33/194 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D +I ++ ++ +D + + ++SPGGS AG I+ +Q +K Sbjct: 29 IIFLSSAIDDDVANLVIAQLLFLAAEDPEKDISLYINSPGGSVTAGMGIYDTMQLIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A E S V L ++ + + + Sbjct: 89 STICVGMAASMGSLLLTAGAPGKRYALENSEVMIHQPLG---GIQGQASDIQIHADWIIK 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + K E P +K +D + + Sbjct: 146 TRHKLNQIYV---------------------------ERTGQPLEKIERDTDRDFFMSAE 178 Query: 217 EAKKVGLIDVVGGQ 230 EAK G+ID V Sbjct: 179 EAKAYGIIDDVLSS 192 >gi|295100804|emb|CBK98349.1| ATP-dependent Clp protease proteolytic subunit ClpP [Faecalibacterium prausnitzii L2-6] Length = 199 Score = 43.1 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 57/183 (31%), Gaps = 25/183 (13%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++ ++ + D + + ++SPGGS AG AI IQ +K I + Sbjct: 39 TSASLVVAQLLYLEGQDPDKDISLYINSPGGSISAGMAIHDTIQYIKCDVSTICMGMAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L S A + + L Sbjct: 99 MGAFLLASGTKGKRFALPNAEIMIHQPLI------------------------AGGQGGG 134 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226 +++ D + + RL+SE P +K + EAK+ GLID Sbjct: 135 LSGQATDIKIHADHIIRTRAKMNRLLSEYTGQPLEKVEQDTERDNFLSAQEAKEYGLIDE 194 Query: 227 VGG 229 V Sbjct: 195 VIT 197 >gi|225419706|ref|ZP_03762009.1| hypothetical protein CLOSTASPAR_06044 [Clostridium asparagiforme DSM 15981] gi|225041643|gb|EEG51889.1| hypothetical protein CLOSTASPAR_06044 [Clostridium asparagiforme DSM 15981] Length = 198 Score = 43.1 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 55/181 (30%), Gaps = 28/181 (15%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +I + + D + ++SPGGS AG AI+ ++ ++ I + Sbjct: 39 TSASLIIAELLFLEAQDPQKDVQFYINSPGGSVTAGFAIYDTMRHIRCDVSTICIGLAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L +A S + ++ + + Sbjct: 99 FGAFLLAGGTRGKRLALPNSQIMIHQPAMSGRGIQGPASDILI----------------- 141 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226 M D + S R+++E+ + + EA + GLID Sbjct: 142 ----------MSDYMQKSRQRLNRILAENTGHTPLEIERDTERDNFMSAEEALEYGLIDS 191 Query: 227 V 227 + Sbjct: 192 I 192 >gi|312964065|ref|ZP_07778509.1| peptidase family S49 family protein [Escherichia coli 2362-75] gi|312291106|gb|EFR18968.1| peptidase family S49 family protein [Escherichia coli 2362-75] Length = 127 Score = 43.1 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 2/115 (1%) Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 ++AAS GY+++C ++ IV+A ++VGSIGV+ Q P FL + I+ + K Sbjct: 14 DKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKDIDIELHTAGQYKRT 73 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEA 218 + E + + ++ ++ ++ F V R P ++ G W G +A Sbjct: 74 LTLLGENTEEGREKFREELNETHQLFKDFVKRMR--PSLDIEQVATGEHWYGQQA 126 >gi|220934115|ref|YP_002513014.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thioalkalivibrio sp. HL-EbGR7] gi|219995425|gb|ACL72027.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thioalkalivibrio sp. HL-EbGR7] Length = 216 Score = 43.1 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 33/201 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I G +ED + ++ ++ + ++ + + ++SPGG+ AG AI+ +Q +K Sbjct: 45 VIFAVGPVEDYMANVIVAQLLFLESENPDKDISLYINSPGGAVTAGMAIYDTMQFIKPDV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L + +D Sbjct: 105 STLCIGQAASMGAVLLAGGAKGKRFCLPHSRVMIHQPLGGFQGQATDIDIHARE------ 158 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + R+++ ++ R Sbjct: 159 ------------------------ILKVRAELNRILAHHTGQSIEQIEQDTERDRFLNPV 194 Query: 217 EAKKVGLIDVVGGQEEVWQSL 237 EA + GLID V E+ + Sbjct: 195 EAAEYGLIDQVLSSREMAEQA 215 >gi|167856520|ref|ZP_02479231.1| putative Clp-like protease [Haemophilus parasuis 29755] gi|167852352|gb|EDS23655.1| putative Clp-like protease [Haemophilus parasuis 29755] Length = 655 Score = 43.1 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 25/204 (12%), Positives = 66/204 (32%), Gaps = 40/204 (19%) Query: 39 ARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 A I+I +I +Q+ + ++ + + + + SPGGS + G AI+ ++ Sbjct: 14 AEISIMDEIGGWGISAQQFAKDLKNLGD---LKHIDLHIHSPGGSVFDGIAIYNLLKNHP 70 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 K + +AAS +I+ + ++ + +++ Sbjct: 71 ASKT--VYIDGLAASMASVIAMVGDPVIMPKNAMMMIH------------------KPWG 110 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213 ++ + ++ + + +E ++ + W Sbjct: 111 IQGGDAEDMRKYADLLDKIE------------NTLIPAYAEKTGKSPEELAEMLKEETWL 158 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSL 237 T E + G D + + S+ Sbjct: 159 TAEECVEQGFADKLAEPIKAMASI 182 >gi|83951435|ref|ZP_00960167.1| Periplasmic serine protease (ClpP class) [Roseovarius nubinhibens ISM] gi|83836441|gb|EAP75738.1| Periplasmic serine protease (ClpP class) [Roseovarius nubinhibens ISM] Length = 309 Score = 43.1 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 26/214 (12%) Query: 35 SPHVARIAIRGQIEDSQELIER-------------IERISRDDSATALIVSLSSPGGSAY 81 S VA + IRG + E++ER I+ ++ +A ++ ++SPGG Sbjct: 58 SRRVAVMPIRGILTPDSEVLERYFGWATYQGIEAACAEIAANEDVSAAVLDVNSPGGMVM 117 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI-SCASNIIVAAETSLVGSIGVLFQYPY 140 E +A+ + KPV V+ MAASA Y I S AS+I + + L + Sbjct: 118 GLEGAAQAVAALAAIKPVHVLVNPMAASAAYFIASQASDITMIPGSELGSIGTMRSSVWP 177 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 VKP + + K + + + +Q +D + F+ V+ R + Sbjct: 178 VKPDNWGDQWGVHLSSHARAKNP----NPTSETGLAEIQRSLDEAEAAFLDAVATGRGLD 233 Query: 201 YD--------KTLVLSDGRIWTGAEAKKVGLIDV 226 G ++ +A L D Sbjct: 234 RAGLPKHLSVTDDEADGGAMYRTDQALARNLADG 267 >gi|327401777|ref|YP_004342616.1| hypothetical protein Arcve_1908 [Archaeoglobus veneficus SNP6] gi|327317285|gb|AEA47901.1| protein of unknown function DUF107 [Archaeoglobus veneficus SNP6] Length = 427 Score = 43.1 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 107/294 (36%), Gaps = 53/294 (18%) Query: 10 TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL-IERIERISRDDSATA 68 R + +SLV ++ + VE V + I+G I + + + +++ + +A A Sbjct: 2 ARMLPVSLVMFLLLSLLSAEAVEAAK--VVEVDIKGDINEGTAIQVSNAFKLAEEVNADA 59 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 +++ + +PGG + ++I I +++ PVIT VH A + S A S Sbjct: 60 VLIVIDTPGGLVTSMKSIVTEI--LQSDIPVITYVHPPGAFSASAGSFILISGHIAAMS- 116 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 + +P + + + + Sbjct: 117 ----------------------------NGTSVGAATPITPIGAAE-----NKTINYLAN 143 Query: 189 FVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQE-EVWQSLYALGVDQSI 246 + + ++E R P D +++G T EA + G++DV+ + E++ + VD + Sbjct: 144 YAKSIAEVRGRPVDIAERFVTEGLSLTAREAYEKGVVDVIADSKGELFSKINGKEVDVNG 203 Query: 247 RKIK----------DWNPPKNYWFCDLKNLSISSL--LEDTIPLMKQTKVQGLW 288 RKI P K F L N +S+ L L+ G+ Sbjct: 204 RKIVLHFETVEIVKAEKPLKASIFEILSNPQTASILFLIGLYGLIFGLTSPGVL 257 >gi|322659269|gb|EFY55517.1| putative periplasmic protease [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] Length = 85 Score = 43.1 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 4/68 (5%) Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 ++ G W G +A + GL+D + +EV L + + K Sbjct: 6 DIEQVATGEHWYGQQALEKGLVDEINTSDEVILGLMEGREVLN----VRYMQRKKLIDRV 61 Query: 263 LKNLSISS 270 + + S+ Sbjct: 62 TGSAAESA 69 >gi|320530213|ref|ZP_08031283.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas artemidis F0399] gi|320137646|gb|EFW29558.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas artemidis F0399] Length = 199 Score = 43.1 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D+ ++ ++ + +D + + ++SPGG AG AI+ +Q +K Sbjct: 24 IIFLGGPIDDNVANVVVAQMLFLESEDPDKDIHLYINSPGGVVTAGLAIYDTMQYIKPDV 83 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + + L Sbjct: 84 STICIGQAASMGSILLTAGAKGKRYALPHARIMIHQPLGGAQGQST-------------- 129 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 +Q+ + +++ DK + Sbjct: 130 ----------------DIQIQAKEILRLREVGNEILARHTGQDTDKINVDTERDNFMSAE 173 Query: 217 EAKKVGLIDVV 227 EAK GLID V Sbjct: 174 EAKAYGLIDEV 184 >gi|295706643|ref|YP_003599718.1| hypothetical protein BMD_4544 [Bacillus megaterium DSM 319] gi|294804302|gb|ADF41368.1| putative membrane protein [Bacillus megaterium DSM 319] Length = 443 Score = 43.1 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 68/233 (29%), Gaps = 30/233 (12%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDS 65 +KT + + + L F S + H I + +E+ L IE +D Sbjct: 1 MKTLFSFVCFLILATGLFPTISTADVKRVH--VIPVNKTVENGLLSFLNRSIEEA-ENDG 57 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 A +I+ + +PGG+ A I +++ S + + + Sbjct: 58 ADLIILDIDTPGGAVDAASEIAKSL-----------------TSTPIPTAAFVDKKALSA 100 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 + + + + + + + + Sbjct: 101 GAYIALNADQIYMTPGSTMGSAAVIDQQGNAAGKKAQSYWLSAMKSAAEQNNRNPKYAEA 160 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV-VGGQEEVWQSL 237 ++ + L ++ T +A++VG + V +++ + L Sbjct: 161 MANTKMVI-------PELNLKGNELLTLTPKQAEQVGYSEGTVKNLDDLLRVL 206 >gi|298346364|ref|YP_003719051.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mobiluncus curtisii ATCC 43063] gi|298236425|gb|ADI67557.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mobiluncus curtisii ATCC 43063] Length = 294 Score = 43.1 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 63/210 (30%), Gaps = 37/210 (17%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSA 80 + D V + I G I + ++ I + + + V L+SPGG Sbjct: 8 IPPETTNPDTQEDVRVLRINGAIAEESWLDDDVTPAIFASELNAGSGPVTVWLNSPGGDV 67 Query: 81 YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 A I+ + + V + +AASA +I+ A++ + + S++ Sbjct: 68 VAAARIYNML--LDYPGQVRVNIDGIAASAASVIAMAASNVAMSPVSMLMIHNPATLAMG 125 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 K L + ++SV + + Sbjct: 126 DKTELSRALDMLESV------------------------------KDSIINAYQLKTGLS 155 Query: 201 YDKTLVLSDGRIWT-GAEAKKVGLIDVVGG 229 K L D W A ++G D + Sbjct: 156 RAKLSKLMDAETWMDATAAIELGFADELLT 185 >gi|284046814|ref|YP_003397154.1| ATP-dependent Clp protease proteolytic subunit ClpP [Conexibacter woesei DSM 14684] gi|283951035|gb|ADB53779.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Conexibacter woesei DSM 14684] Length = 193 Score = 43.1 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 59/177 (33%), Gaps = 29/177 (16%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + D + + ++SPGGS YAG AI+ +Q +K I M+ + Sbjct: 44 IVAQLLHLESSDPDKDISIYINSPGGSIYAGLAIYDTMQFIKPDVQTICCGIAMSMGSLL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L+ A ++ S + + ++ + + +K+ E F P Sbjct: 104 LMGGARGKRMSLPNSRILIHQPSAGFEGQSTDIEIH--AREIIKTRKRIDEIYAFHTGQP 161 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 + + R + EA + GLID V Sbjct: 162 EERVNH---------------------------DMERDRFFKPDEAVEYGLIDRVIT 191 >gi|238783609|ref|ZP_04627630.1| ATP-dependent Clp protease proteolytic subunit [Yersinia bercovieri ATCC 43970] gi|238715487|gb|EEQ07478.1| ATP-dependent Clp protease proteolytic subunit [Yersinia bercovieri ATCC 43970] Length = 207 Score = 43.1 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 60/196 (30%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + + ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 IIFLTGQVEDHMANLITAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + ++ Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHARE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 156 ------------------------ILKVKSRMNELMALHTGKSLEEIERDTERDRFLSAE 191 Query: 217 EAKKVGLIDVVGGQEE 232 EA GL+D V + + Sbjct: 192 EAVGYGLVDSVFTRRD 207 >gi|317495864|ref|ZP_07954227.1| Clp protease [Gemella moribillum M424] gi|316914041|gb|EFV35524.1| Clp protease [Gemella moribillum M424] Length = 212 Score = 43.1 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 56/196 (28%), Gaps = 34/196 (17%) Query: 40 RIAIRGQIEDSQ---ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 RI I G + Q + ++ + DS + ++SPGGS AG AI+ +Q +K Sbjct: 28 RIIILGSDVNDQVANSITSQLLFLEAQDSEKDIYFYINSPGGSVTAGFAIYDTMQHIKCD 87 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 I + A L + A + V L ++ Sbjct: 88 VVTICMGMAASMGAFLLAAGTIGKRYALPNAEVMIHQPLGGAQGQATEIEIAAK------ 141 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTG 215 + + +++++ + Sbjct: 142 ------------------------HILRTREKLNKILADRTGQTIKAIERDTERDNYLSA 177 Query: 216 AEAKKVGLIDVVGGQE 231 EA GL+D V E Sbjct: 178 EEACAYGLVDKVMYPE 193 >gi|148272645|ref|YP_001222206.1| ATP-dependent Clp protease proteolytic subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|170781894|ref|YP_001710226.1| ATP-dependent Clp protease proteolytic subunit [Clavibacter michiganensis subsp. sepedonicus] gi|147830575|emb|CAN01510.1| ATP-dependent protease, proteolytic subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|169156462|emb|CAQ01610.1| ATP dependent Clp protease proteolytic subunit 2 [Clavibacter michiganensis subsp. sepedonicus] Length = 226 Score = 43.1 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 60/184 (32%), Gaps = 27/184 (14%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D +++ ++SPGGS A AI+ +Q V + + + Sbjct: 60 ASADDVMAQLLVLESMDPDRDIVMYINSPGGSFTAMTAIYDTMQYVSPQIQTVCLGQAAS 119 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L A +A + V S Sbjct: 120 AAAVLLAGGAPGKRLALPNA--------------------------RVLIHQPATGESSG 153 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 + + +Q + + S+ +R+ + +I EA + GLID V Sbjct: 154 GQASDIEIQAAEIMRMRSWLEDTLAKHTNRD-RDQINRDIERDKILGADEALEYGLIDQV 212 Query: 228 GGQE 231 Sbjct: 213 LTSR 216 >gi|160871940|ref|ZP_02062072.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rickettsiella grylli] gi|159120739|gb|EDP46077.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rickettsiella grylli] Length = 220 Score = 43.1 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 62/204 (30%), Gaps = 33/204 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IED + +I ++ + ++ + + ++SPGG +G AI+ +Q +K Sbjct: 41 IIFVVGPIEDHMANLIIAQMLFLESENPDKDISLYINSPGGVVTSGLAIYDTMQFIKPDV 100 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + +A+A L + + L Y ++ + V Sbjct: 101 STMCIGQAASAAALLLCGGTKGKRHCLPHARMMIHQPLGGYQGQATDIEIHTREMLLV-- 158 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 ++S+ ++ Sbjct: 159 ----------------------------RERINSIMSKHTGKNTEQILRDTDRDNFMGAQ 190 Query: 217 EAKKVGLIDVVGGQEEVWQSLYAL 240 +A GLID V ++ +L Sbjct: 191 QAIDYGLIDAVLTMRSEERARESL 214 >gi|256810842|ref|YP_003128211.1| protein of unknown function DUF114 [Methanocaldococcus fervens AG86] gi|256794042|gb|ACV24711.1| protein of unknown function DUF114 [Methanocaldococcus fervens AG86] Length = 278 Score = 43.1 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 59/151 (39%), Gaps = 5/151 (3%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 IEDS+E++ I D +I +PGG A A E I A+++ K + VI + Sbjct: 67 TIEDSEEILRAIRLTPEDMPIDLII---HTPGGLALASEQIALALKEHKAKTTVIIPHYA 123 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 M+ G LI+ A++ I+ + +++G + L+ V + Sbjct: 124 MSG--GSLIALAADEIIMDKNAVMGPVDPQIGQYPAASILEAYYKKGDKVDDETLILVDI 181 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + + + + D + +++ Sbjct: 182 SKKAIRQMEEFVYELLKDKYGDEKAKEIAKK 212 >gi|187735546|ref|YP_001877658.1| Endopeptidase Clp [Akkermansia muciniphila ATCC BAA-835] gi|187425598|gb|ACD04877.1| Endopeptidase Clp [Akkermansia muciniphila ATCC BAA-835] Length = 218 Score = 43.1 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 55/191 (28%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I I+D +I ++ + D + V ++SPGGS AG AI+ +Q V Sbjct: 42 VIFIGSAIDDDVANSVIAQLLFLQMADPKKDIHVYINSPGGSVTAGLAIYDTMQFVSCDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + S V V Sbjct: 102 NTYCLGIAASMGSVLLAAGTPGKRFCLPNSHVMIHQVSGGAQG----------------- 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 V+ + + ++++ + +D + T Sbjct: 145 -------------TASDVERTIGFMFNLKKRLNGILAKHTGKTEKQIEKDADRDNYMTAE 191 Query: 217 EAKKVGLIDVV 227 EA GL+D V Sbjct: 192 EAVAYGLVDKV 202 >gi|190570808|ref|YP_001975166.1| minor capsid protein c (fragment) [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357080|emb|CAQ54482.1| minor capsid protein c (fragment) [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 158 Score = 43.1 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 13/110 (11%) Query: 31 VEDNSPHVARIAIRGQ-------------IEDSQELIERIERISRDDSATALIVSLSSPG 77 V N A IAI G + +++ E IE + +++ + SPG Sbjct: 40 VNQNIEKTAVIAIHGILTKKPGAFDDFLGMTSYEKIQEEIEEALSNKDIETILLDIDSPG 99 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 G + I + + +K +I ++ A SA Y I+ ++ + + TS Sbjct: 100 GEVNGIFDLADFIYESRAKKRIIAIANDDAYSAAYAIASSAEKVFVSRTS 149 >gi|300721991|ref|YP_003711271.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [Xenorhabdus nematophila ATCC 19061] gi|297628488|emb|CBJ89055.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [Xenorhabdus nematophila ATCC 19061] Length = 207 Score = 43.1 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A S V L + Sbjct: 102 STICMGQACSMGSFLLAAGAEGKRFCLPNSRVMIHQPLGGFQGQ---------------- 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 +Q+ + L+++ P DK R + + Sbjct: 146 --------------ATDIQIHAQEILKVKARMNELMAKHTGQPLDKIEEDTERDRFLSAS 191 Query: 217 EAKKVGLIDVV 227 EA GL+D + Sbjct: 192 EAVDYGLVDSI 202 >gi|260596809|ref|YP_003209380.1| ATP-dependent Clp protease proteolytic subunit [Cronobacter turicensis z3032] gi|260215986|emb|CBA28638.1| ATP-dependent Clp protease proteolytic subunit [Cronobacter turicensis z3032] Length = 214 Score = 43.1 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED ++ ++ + ++ + + ++SPGG AG +I+ +Q ++ Sbjct: 49 IIFLTGQVEDQMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIQPDV 108 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + S V L Y ++ Sbjct: 109 STICMGQAASMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE------ 162 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L+++ P ++ R + Sbjct: 163 ------------------------ILKVKARMNELMAQHTGQPLEQIERDTERDRFLSAG 198 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D + Sbjct: 199 EAVEYGLVDSIMT 211 >gi|115311350|sp|Q3M726|CLPP3_ANAVT RecName: Full=ATP-dependent Clp protease proteolytic subunit 3; AltName: Full=Endopeptidase Clp 3 Length = 214 Score = 43.1 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D+ ++ ++ + +DS + + ++SPGGS YAG AI+ IQ+++ Sbjct: 37 IIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQLYINSPGGSVYAGMAIYDTIQQIRPDV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + ++ S + L ++ I + Sbjct: 97 VTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMIHQPLGGAQGQAIDIEIQAREILYI-- 154 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +L++ P ++ +D + + Sbjct: 155 ----------------------------KAQLNQLLANHTGQPLERIEADTDRDFFMSAE 186 Query: 217 EAKKVGLIDVV 227 EAK GLID V Sbjct: 187 EAKNYGLIDQV 197 >gi|148657762|ref|YP_001277967.1| endopeptidase Clp [Roseiflexus sp. RS-1] gi|148569872|gb|ABQ92017.1| Endopeptidase Clp [Roseiflexus sp. RS-1] Length = 219 Score = 43.1 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 65/193 (33%), Gaps = 33/193 (17%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 I QI + ++ ++ + +D + + ++SPGGS AG AI+ +Q ++ + Sbjct: 52 PIDDQIANL--IVAQLLFLEHEDPDRDIWLYINSPGGSITAGLAIYDTMQVIRPDVATVC 109 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + + L A + S +I + Sbjct: 110 VGMAGSMATPILAGGAKGKRYSLPHS-----------------------TIHMHPAGGGA 146 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKK 220 +P E+ + + L+++ P ++ +AK+ Sbjct: 147 RGYAPDVEIMARE-------LLREQQLIRELLAKDTGQPLERIARDFDRDLFMDPQQAKE 199 Query: 221 VGLIDVVGGQEEV 233 G+ID + +E++ Sbjct: 200 YGIIDEILTREDL 212 >gi|254195020|ref|ZP_04901449.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia pseudomallei S13] gi|254195945|ref|ZP_04902371.1| Clp protease [Burkholderia pseudomallei S13] gi|254197217|ref|ZP_04903639.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia pseudomallei S13] gi|169651768|gb|EDS84461.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia pseudomallei S13] gi|169652690|gb|EDS85383.1| Clp protease [Burkholderia pseudomallei S13] gi|169653958|gb|EDS86651.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia pseudomallei S13] Length = 366 Score = 43.1 bits (99), Expect = 0.049, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 78/218 (35%), Gaps = 43/218 (19%) Query: 30 HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + VA I I I D+Q + +++ + A+++ V+++S GG + A Sbjct: 13 QAQAGGGKVAEIRIYSDIGFWGTDAQNFVSQLDAAAA--DASSITVAINSMGGDVFDAFA 70 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+ A+++ + V +AASA L+ A + I E +L+ Sbjct: 71 IYNALRRYAGKVK--GRVDGIAASAASLVLMACDEIEMPENALLMIHH------------ 116 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 +V + K ++ + ++ V + + D Sbjct: 117 ------PHTVAAGESKDLRRVAELLDNASAGILAAYV------------QRSGLSEDDVR 158 Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + D W T A+AK+ G DV+ E L A Sbjct: 159 AMMDAETWLTAAQAKEKGFCDVI----EAPVKLAASAG 192 >gi|197302444|ref|ZP_03167499.1| hypothetical protein RUMLAC_01172 [Ruminococcus lactaris ATCC 29176] gi|197298342|gb|EDY32887.1| hypothetical protein RUMLAC_01172 [Ruminococcus lactaris ATCC 29176] Length = 193 Score = 43.1 bits (99), Expect = 0.049, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 31/181 (17%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++ ++ + DD + + ++SPGGS AG AI+ +Q +K + + Sbjct: 39 VSASVIVAQLLFLEADDPDKDIQLYINSPGGSVTAGMAIYDTMQYIKCDVSTVCIGMAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L A A + + L Sbjct: 99 MGAFLLSGGAKGKRFALPNAEIMIHQPLGGAQGQ-------------------------- 132 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226 +Q+ + + + +++ + P + + AEAK+ GLID Sbjct: 133 ----ATEIQIAAEHILRTRKTLNSILAANTGKPLEVIQTDTERDNFMSAAEAKEYGLIDE 188 Query: 227 V 227 V Sbjct: 189 V 189 >gi|157961398|ref|YP_001501432.1| hypothetical protein Spea_1572 [Shewanella pealeana ATCC 700345] gi|157846398|gb|ABV86897.1| protein of unknown function DUF107 [Shewanella pealeana ATCC 700345] Length = 498 Score = 43.1 bits (99), Expect = 0.049, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 78/229 (34%), Gaps = 24/229 (10%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISR-----DDSATALIVSLSS 75 + + P V + G I S+ L IE+ + + +++ + + Sbjct: 29 YASTAQEPSIETRPQVLVLEFEGAIGPATSEYLTHGIEQANASAALGNGEIELIVIVMDT 88 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 PGG + I + I + AASAG I A +I A+ + +G+ Sbjct: 89 PGGLVSSLRDINQTILNSSIPIACLVAPPGARAASAGTYILYACHIAAMADATTLGAATP 148 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 + P P + K + E P M+ + + ++R ++ Sbjct: 149 VSIGPGSAP-------------TPAPKPDQKDDEEPAPATPSAMEKKILNDAIAYIRALA 195 Query: 195 ESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + R + + T EA ++ +I+++ + + + L Sbjct: 196 QLRGRNEQWAELAVKEAATLTAKEALEMNVINLI--SPDAPRLVAELTG 242 >gi|114767020|ref|ZP_01445928.1| Protease subunit of ATP-dependent Clp protease [Pelagibaca bermudensis HTCC2601] gi|114540804|gb|EAU43868.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp. HTCC2601] Length = 210 Score = 43.1 bits (99), Expect = 0.049, Method: Composition-based stats. Identities = 20/202 (9%), Positives = 58/202 (28%), Gaps = 33/202 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + + ++SPGG +G +I+ +Q ++ + Sbjct: 38 IIFVSGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIRPKV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + + S + Y Sbjct: 98 STLVIGQAASMGSLLLTAGEAGMRFSLPNSRIMVHQPSGGYQGQ---------------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + + + + L Sbjct: 142 --------------ATDIMIHAEETLKLKRRLNEIYVRHTGQTLENVEAALERDNFMAPE 187 Query: 217 EAKKVGLIDVVGGQEEVWQSLY 238 +AK+ GLID + + Sbjct: 188 DAKEWGLIDEIVESRGAAEEAK 209 >gi|116253257|ref|YP_769095.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium leguminosarum bv. viciae 3841] gi|116243122|sp|Q1MDH4|CLPP3_RHIL3 RecName: Full=ATP-dependent Clp protease proteolytic subunit 3; AltName: Full=Endopeptidase Clp 3 gi|115257905|emb|CAK09003.1| putative ATP-dependent Clp protease [Rhizobium leguminosarum bv. viciae 3841] Length = 194 Score = 43.1 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 63/196 (32%), Gaps = 38/196 (19%) Query: 41 IAIRGQIED--SQELIERI--ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 I I G I +Q++ ++ + D+ + ++SPGG +G++I I+ +K + Sbjct: 29 IFIYGPINQELAQKVCSQLVALAAASDEDIR---IYVNSPGGHVESGDSIHDMIKFIKPK 85 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 +I +A A ++ + + + ++ Sbjct: 86 VWMIGTGWVASAGALIYVATPKERRLCLPNTRFLLHQPSGGTRGMASDIEI--------- 136 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215 + R+++ + P DK +D W + Sbjct: 137 ---------------------QAREIIKMNERLNRIMAAATGQPLDKIDKDTDRDYWLSA 175 Query: 216 AEAKKVGLIDVVGGQE 231 EAK GL+ + + Sbjct: 176 EEAKDYGLVSRIVTSQ 191 >gi|56478265|ref|YP_159854.1| ATP-dependent Clp protease proteolytic subunit [Aromatoleum aromaticum EbN1] gi|67460188|sp|Q5P161|CLPP_AZOSE RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|56314308|emb|CAI08953.1| ATP-dependent Clp protease proteolytic subunit [Aromatoleum aromaticum EbN1] Length = 212 Score = 43.1 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 62/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + ++SPGGS +G AI+ +Q +K Sbjct: 45 VIFLVGPVNDVTANLIVAQLLFLESENPDKDVYFYINSPGGSVSSGMAIYDTMQFIKPSV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + S V L + ++ I + Sbjct: 105 STLCIGQAASMGSFLLAAGEKGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAREILGI-- 162 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216 ++++ P ++ +D R + A Sbjct: 163 ----------------------------RAKLNEMLAKHTGQPIEQIEKDTDRDRFMSAA 194 Query: 217 EAKKVGLIDVVGG 229 +A + G++D V Sbjct: 195 DAVEYGIVDKVLT 207 >gi|112823618|gb|ABI25707.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haemophilus somnus 129PT] Length = 188 Score = 43.1 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED ++ ++ + +D A + + ++SPGGS AG AI+ +Q +K Sbjct: 24 VIFLTGEVEDRMANLIVAQLLFLEAEDPAKDINIYINSPGGSVTAGMAIYDTMQFIKPDV 83 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A + V L + Sbjct: 84 RTLCIGQACSMGAFLLAGGTAGKRAALPHARVMIHQPLGGFRGQ---------------- 127 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 +Q+ + ++ ++ + Sbjct: 128 --------------ASDIQIHAQEILKIKQTLNERLAFHTGQSIEQIEQDTDRDNFMSAE 173 Query: 217 EAKKVGLIDVV 227 +AK GL+D V Sbjct: 174 QAKLYGLVDEV 184 >gi|319405542|emb|CBI79161.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella sp. AR 15-3] Length = 210 Score = 43.1 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 63/210 (30%), Gaps = 39/210 (18%) Query: 40 RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G +ED+ ++ ++ + ++ + + ++SPGG +G AI+ +Q ++ Sbjct: 37 IIFINGPVEDNMAMLVCAQLLFLEAENPKKEINLYINSPGGMVTSGMAIYDTMQFIRPSV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + A+ A + + Sbjct: 97 STLCMGQAASMGSLLLTAGAAGRRFALPNARIMVHQPSG--------------------- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + Y+ L T Sbjct: 136 -------GFQGQASDIERHA--QDIIKMKRRLNEIYVQHTGQNYEVIEKTLDRDHFMTAE 186 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 EAK+ GLID +V Q ++ Sbjct: 187 EAKQFGLID------DVIQYRAETEKEEKD 210 >gi|294141768|ref|YP_003557746.1| ATP-dependent Clp protease, proteolytic subunit [Shewanella violacea DSS12] gi|293328237|dbj|BAJ02968.1| ATP-dependent Clp protease, proteolytic subunit [Shewanella violacea DSS12] Length = 203 Score = 43.1 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +E+ + ++ ++ + + + + ++SPGGS AG AI+ +Q +K Sbjct: 38 IIFLVGPVEEHMANLVVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPDV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A+ S V L + + + + + Sbjct: 98 STVCIGQAASMGAFLLAGGAAGKRHCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILG 154 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K +E P + + A Sbjct: 155 IKNKLNEML---------------------------AEHTGQPLEVIERDTDRDNFMSAA 187 Query: 217 EAKKVGLIDVVGG 229 +A + GL+D V Sbjct: 188 QAAEYGLVDSVMS 200 >gi|253796912|gb|ACT35711.1| capsid protein [Wolbachia phage WO] Length = 98 Score = 43.1 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P + ++++ +Q VD Y FV+L++ +R + +K G + G +A ++GL D Sbjct: 1 PHEPMTSESLESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59 Query: 226 VVGGQEEVWQ 235 V E Sbjct: 60 GVTTFFEFIN 69 >gi|86360121|ref|YP_472010.1| membrane protein for nodulation competitiveness [Rhizobium etli CFN 42] gi|86284223|gb|ABC93283.1| membrane protein for nodulation competitiveness [Rhizobium etli CFN 42] Length = 446 Score = 43.1 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 83/239 (34%), Gaps = 18/239 (7%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARI-AIRGQIEDS--QELIERIERISRDDSATALIVSLS 74 + L ++ +W V S V+ + + G I + +I I+R ++ +++ + Sbjct: 1 MLLFLLLSAWVFGVPSASDRVSVVLKVNGAIGPAIADYVIRGIQRAGEREAV-LIVLQMD 59 Query: 75 SPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 +PGG + I RAI + AASAG I AS+I A + +G+ Sbjct: 60 TPGGLDTSMREIIRAILASPVPVASFVAPSGARAASAGTYILYASHIAAMAPGTNLGAAT 119 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + LGV P K P + + + ++R + Sbjct: 120 PIA-----------LGVKPFGGDEEPEKKPSEPSGKQAEAPGNAHEAKAVNDAVAYIRGL 168 Query: 194 SESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIK 250 +E RN + + + + A + +ID ++ V ++ Sbjct: 169 AELRNRNAEWAERAVREAASLSSTAAVREHVIDFTAVDINDLLAKAQGRMVRVGQTDLR 227 >gi|218440073|ref|YP_002378402.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanothece sp. PCC 7424] gi|218172801|gb|ACK71534.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece sp. PCC 7424] Length = 229 Score = 43.1 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 71/197 (36%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + I+D + ++ ++ + +D + + ++SPGGS YAG AI+ +Q+++ Sbjct: 52 IVFLGTAIDDNVADSIVAQLLYLDAEDPEKDIQIYINSPGGSVYAGLAIYDTMQQIRPDV 111 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A +A ++ + + +D I + Sbjct: 112 VTICFGLAASMGAFLLSGGAKGKRMALPSARMMIHQPIGGAQGQAVEIDIQAKEILYI-- 169 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 L++E PYD+ ++ + + Sbjct: 170 ----------------------------KQRLNTLLAEHTGQPYDRIAEDTERDFYMSAY 201 Query: 217 EAKKVGLIDVVGGQEEV 233 +AK GLID V + E+ Sbjct: 202 DAKNYGLIDQVIARSEL 218 >gi|238791431|ref|ZP_04635069.1| ATP-dependent Clp protease proteolytic subunit [Yersinia intermedia ATCC 29909] gi|238729047|gb|EEQ20563.1| ATP-dependent Clp protease proteolytic subunit [Yersinia intermedia ATCC 29909] Length = 194 Score = 43.1 bits (99), Expect = 0.052, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 61/196 (31%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + + ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 29 IIFLTGQVEDHMANLITAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + ++ Sbjct: 89 STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHARE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ P ++ R + Sbjct: 143 ------------------------ILKVKSRMNELMALHTGKPLEEIERDTERDRFLSAE 178 Query: 217 EAKKVGLIDVVGGQEE 232 EA GL+D V + + Sbjct: 179 EAVGYGLVDSVFTRRD 194 >gi|254525962|ref|ZP_05138014.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Prochlorococcus marinus str. MIT 9202] gi|221537386|gb|EEE39839.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Prochlorococcus marinus str. MIT 9202] Length = 214 Score = 43.1 bits (99), Expect = 0.052, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 60/179 (33%), Gaps = 31/179 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 S L+ ++ + +D + + ++SPGGS AG AI+ +Q++ I + Sbjct: 63 SDSLVAQLLFLEAEDPEKDIQIYINSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMG 122 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L A +A S + L ++ Sbjct: 123 AFLLSGGAKGKRLALPNSRIMIHQPLGGAQGQAVEIE----------------------- 159 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 + + L++E P +K ++ + + +EA + GLID V Sbjct: 160 -------IQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEAVEYGLIDKV 211 >gi|170077811|ref|YP_001734449.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. PCC 7002] gi|169885480|gb|ACA99193.1| Clp protease [Synechococcus sp. PCC 7002] Length = 199 Score = 43.1 bits (99), Expect = 0.052, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 61/179 (34%), Gaps = 29/179 (16%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + ++I + + +D + + + ++SPGGS AG AI+ ++ +K+ I + Sbjct: 44 ANQIIAIMLYLDSEDPSKPIYLYINSPGGSVTAGLAIYDTMKHIKSEVVTICVGLAASMG 103 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L + +A S + L + D + + + Sbjct: 104 AFLLSAGTKGKRLALPHSRIMIHQPLGGIQGRRQATDIDIEAKEII-------------- 149 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 H L++ +K +D + + EA + GLID V Sbjct: 150 --------------RIKHQLNELMAAHTGQSIEKIEKDTDRDYFMSAQEALEYGLIDKV 194 >gi|91787906|ref|YP_548858.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Polaromonas sp. JS666] gi|91697131|gb|ABE43960.1| ATP-dependent Clp protease proteolytic subunit ClpP [Polaromonas sp. JS666] Length = 218 Score = 43.1 bits (99), Expect = 0.052, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + ++SPGGS AG AI+ +Q +K Sbjct: 53 VIFLVGPVNDQTANLVVAQLLFLESENPDKDISFYINSPGGSVTAGMAIYDTMQFIKPDV 112 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A + S V ++ Sbjct: 113 STLCVGMAASMGAFLLSAGAKGKRFSLPNSRVMIHQPSGGAQGQATDIE----------- 161 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + + R+++ + P +K Sbjct: 162 -------------------IHARDILKTRDQLNRILAANTGQPIEKIERDTERDYFLFAE 202 Query: 217 EAKKVGLIDVV 227 +AK+ GL+D V Sbjct: 203 DAKEYGLVDQV 213 >gi|121997404|ref|YP_001002191.1| ATP-dependent Clp protease proteolytic subunit [Halorhodospira halophila SL1] gi|226706517|sp|A1WUM7|CLPP_HALHL RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|121588809|gb|ABM61389.1| ATP-dependent Clp protease proteolytic subunit ClpP [Halorhodospira halophila SL1] Length = 210 Score = 43.1 bits (99), Expect = 0.052, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 63/197 (31%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED Q L+ ++ + ++ + + ++SPGGS AG AI+ +Q +K Sbjct: 42 VIFLVGPVEDYQANLLVAQLLFLESENPDKDVHLYINSPGGSVTAGLAIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A A S + L + +D Sbjct: 102 ATLCVGQAASMGALLLAAGAEGKRHALPNSRMMIHQPLGGFQGQATDIDIHARE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + S +++ + +D + AE Sbjct: 156 ------------------------ILSMRDRLNTILAHHTGQDIETIRQDTDRDNFMAAE 191 Query: 218 -AKKVGLIDVVGGQEEV 233 A + GLID V Sbjct: 192 AAAQYGLIDRVLTSRGA 208 >gi|332809376|ref|XP_003308229.1| PREDICTED: calcium-activated chloride channel regulator 4 isoform 1 [Pan troglodytes] Length = 682 Score = 43.1 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 74/265 (27%), Gaps = 21/265 (7%) Query: 46 QIEDSQELIERIER-----------ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I +S++ I + L++ S G + +A + Sbjct: 38 VISNSEDFKNTIPMVTPPPPPVFSLLKISQRIVCLVLDKSGSMGGKDRLNRMNQAAKHFL 97 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV-KPFLDKLGVSIK 153 + M I + + + L YP + + + Sbjct: 98 LQTVENGSWVGMVHFDSTATVVNKLIQIKSSDERNTLMAGLPTYPRGGTSICSGIKYAFQ 157 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW--FVRLVSESRNIPYDKTL--VLSD 209 + + + S + +D V ++ R+ ++ Sbjct: 158 VIGELHSQLDGSEVLLLTDGEDNTASSCIDEVKQSGAIVHFIALGRDADEAVIEMSKITG 217 Query: 210 GR-IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 G + EA+ GLID G L + + + N W D + Sbjct: 218 GSHFYVSDEAQNNGLIDAFGALTSGNTDLSQKSLQLESKGL---TLNSNPWMNDTVIID- 273 Query: 269 SSLLEDTIPLMKQTKVQGLWAVWNP 293 S++ +DT L+ + ++W+P Sbjct: 274 STVGKDTFFLITWNSLPPSISLWDP 298 >gi|225352780|ref|ZP_03743803.1| hypothetical protein BIFPSEUDO_04410 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156387|gb|EEG69956.1| hypothetical protein BIFPSEUDO_04410 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 233 Score = 43.1 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 30/181 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D +++ ++SPGGS A AI+ +Q +K + + Sbjct: 77 TSADDIMAQLLVLESQDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 136 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + A + + V + K Sbjct: 137 AAAILLAAGAKGKRLMLPNARVLIHQPAIDQGFGKA------------------------ 172 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226 +++ + W +++ +K + T EAK+ G++D Sbjct: 173 -----TEIEIQAKEMLRMREWLENTLAKHTGRDVEKIRKDIEVDTFLTAPEAKEYGIVDE 227 Query: 227 V 227 V Sbjct: 228 V 228 >gi|116243153|sp|Q1Q8J2|CLPP_PSYCK RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp Length = 215 Score = 43.1 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG AIF + +K Sbjct: 47 VIFLTGQVEDHMANLIVAQLLFLEAENPDKDIHLYINSPGGSVSAGLAIFDTMNFIKPEV 106 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A + V ++ Sbjct: 107 STICMGGAYSMGSFLLAAGEKGKRYALANARVMIHQPSGGAQGQATDIEINARE------ 160 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 + + +++E P DK + W Sbjct: 161 ------------------------ILKTRARLNEILAERTGQPVDKIEKDVERDYWLDAK 196 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 197 EAKEYGLIDEV 207 >gi|330469650|ref|YP_004407393.1| endopeptidase clp [Verrucosispora maris AB-18-032] gi|328812621|gb|AEB46793.1| endopeptidase clp [Verrucosispora maris AB-18-032] Length = 212 Score = 43.1 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 57/176 (32%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 + ++ ++ +D + + ++SPGGS Y+G AI+ +Q + N + MAAS G Sbjct: 52 ICAQLLLLAAEDPDRDIFLWINSPGGSVYSGMAIYDTMQYIDNDVSTVA--MGMAASMGQ 109 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L+ CA L Sbjct: 110 LLLCAGTKGKR-----YALPHARIMMHQPSGGLGG-----------------------TA 141 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVV 227 + + + + + F V+ + SD R +T EA G ID V Sbjct: 142 SDIAIQAEQMLYTKRMFQERVAHHTGQSQAQIEADSDRDRWFTAQEAMDYGFIDKV 197 >gi|282900541|ref|ZP_06308485.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505] gi|281194594|gb|EFA69547.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505] Length = 237 Score = 43.1 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 68/191 (35%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + ++ ++ + +D + + ++SPGGS YAG AI+ IQ+++ Sbjct: 60 IIFLGTAIDDNVANSIVAQLLFLDAEDPEKDVQLYINSPGGSVYAGMAIYDTIQQIRPDV 119 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + + ++ S + L ++ I + Sbjct: 120 VTICFGLAASMGAFLLTAGTAGKRMSLPDSRIMIHQPLGGAQGQAIDIEIQAREILYI-- 177 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +L+S+ P ++ ++ + + Sbjct: 178 ----------------------------KANLNQLMSKHTGQPLERIEADTERDFFMSPQ 209 Query: 217 EAKKVGLIDVV 227 EAK GLID V Sbjct: 210 EAKDYGLIDQV 220 >gi|160939893|ref|ZP_02087240.1| hypothetical protein CLOBOL_04784 [Clostridium bolteae ATCC BAA-613] gi|158437327|gb|EDP15092.1| hypothetical protein CLOBOL_04784 [Clostridium bolteae ATCC BAA-613] Length = 196 Score = 43.1 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 54/184 (29%), Gaps = 26/184 (14%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +I ++ + D + + ++SPGGS AG A++ +Q +K I + Sbjct: 39 TSASLIIAQLLFLESTDPDKDIQLYINSPGGSVTAGWAVYDTMQYIKCDVSTICLGLAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L A +A S + + P Sbjct: 99 FGAFLLAGGAHGKRMALPNS-------------------------EIMIHQPAIHGNGIQ 133 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 + + V V+ R+ + + EA + GLID + Sbjct: 134 GPASDIKIMSDYMQKSRQRLNRVLAVNTGRSE-EEIARDTERDNFMSAEEALEYGLIDSI 192 Query: 228 GGQE 231 + Sbjct: 193 LTRR 196 >gi|327440946|dbj|BAK17311.1| membrane-bound serine protease [Solibacillus silvestris StLB046] Length = 442 Score = 43.1 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 5/129 (3%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSA 66 +T+ + + + + S V I+I +IE + L + + +A Sbjct: 3 RTKGISWIFLMVMSFVLMFPSLTAFADGKVYEISISNEIEKGLVEHLKRGFDEAKSN-NA 61 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 A+I+++ +PGG A I R + + P+I V+ A SAG I+ ++ I Sbjct: 62 EAIILNMHTPGGFVAAASEIGRLMDAI--DIPIIAFVNSDALSAGAYIALHADKIYMTPN 119 Query: 127 SLVGSIGVL 135 + +G+ V+ Sbjct: 120 ATMGAAAVI 128 >gi|218247705|ref|YP_002373076.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece sp. PCC 8801] gi|257060958|ref|YP_003138846.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece sp. PCC 8802] gi|218168183|gb|ACK66920.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece sp. PCC 8801] gi|256591124|gb|ACV02011.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece sp. PCC 8802] Length = 229 Score = 43.1 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 31/179 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + ++ ++ + +D + + ++SPGGS YAG AI+ +Q+++ I + Sbjct: 64 ADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVATICFGLAASMG 123 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L A +A +S + L ++ I + Sbjct: 124 AFLLCGGAPGKRMALPSSRIMIHQPLGGAQGQAVEIEIQAKEILYI-------------- 169 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 +++ P+D ++ + + EAK+ GLID V Sbjct: 170 ----------------KRRLNEMLASHTGQPFDTIAEDTERDFFMSAQEAKEYGLIDKV 212 >gi|241203529|ref|YP_002974625.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857419|gb|ACS55086.1| Endopeptidase Clp [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 203 Score = 43.1 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 25/196 (12%), Positives = 65/196 (33%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D+ + ++ + ++ + + ++SPGG +G A++ ++ ++ Sbjct: 33 IIFLNGEVNDTVSALVCAQLLFLEAENPKKPINLYINSPGGVVTSGLAMYDTMRFIRAPV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + + + + G G P + + + Sbjct: 93 --------------HTLCMGTARSMGSFLLMAGEAGGRAALPNASILIHQPSGGFQG--- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + RL +E Y+ + R T Sbjct: 136 -------------QASDMMIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAE 182 Query: 217 EAKKVGLIDVVGGQEE 232 EA + GLID + E Sbjct: 183 EALEWGLIDRILTVRE 198 >gi|57168633|ref|ZP_00367765.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter coli RM2228] gi|305432739|ref|ZP_07401899.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter coli JV20] gi|57019914|gb|EAL56594.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter coli RM2228] gi|304444248|gb|EFM36901.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter coli JV20] Length = 194 Score = 43.1 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + ++ ++ + +D + + ++SPGG +G +I+ + +K Sbjct: 28 IIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A A S + L ++ Sbjct: 88 CTICIGQAASMGAFLLSCGAEGKRFALPNSRIMIHQPLGGARGQATDIE----------- 136 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216 + + +++++ K + Sbjct: 137 -------------------IQAKEILRLKAILNDILAKNTKQKVAKIVKDTERDFFMSAQ 177 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 178 EAKEYGLIDKV 188 >gi|332376543|gb|AEE63411.1| unknown [Dendroctonus ponderosae] Length = 232 Score = 43.1 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 31/193 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D+ ++ ++ + + + A+ + ++SPGGS AG I+ +Q + Sbjct: 52 IICLMGPINDAMSSLIVAQLLFLQSESTNKAIHMYINSPGGSVTAGLGIYDTMQYILPPV 111 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + S+ + P ++ L + I Sbjct: 112 ATWCV---------------------GQAASMASLLLASGTPGMRHSLPNARIMIHQPSG 150 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + Q + H L RN+ D + AE Sbjct: 151 GAQGQATDIKIQAEEIIKLKNQINALYARHTTQPLEKIERNMERD--------TFMSPAE 202 Query: 218 AKKVGLIDVVGGQ 230 A+ G+ID + Sbjct: 203 AQSFGIIDKILTS 215 >gi|257865163|ref|ZP_05644816.1| peptidase S14 [Enterococcus casseliflavus EC30] gi|257871487|ref|ZP_05651140.1| peptidase S14 [Enterococcus casseliflavus EC10] gi|257874785|ref|ZP_05654438.1| peptidase S14 [Enterococcus casseliflavus EC20] gi|325571575|ref|ZP_08147075.1| ATP-dependent Clp protease, protease subunit [Enterococcus casseliflavus ATCC 12755] gi|257799097|gb|EEV28149.1| peptidase S14 [Enterococcus casseliflavus EC30] gi|257805651|gb|EEV34473.1| peptidase S14 [Enterococcus casseliflavus EC10] gi|257808951|gb|EEV37771.1| peptidase S14 [Enterococcus casseliflavus EC20] gi|325156051|gb|EGC68247.1| ATP-dependent Clp protease, protease subunit [Enterococcus casseliflavus ATCC 12755] Length = 196 Score = 43.1 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 60/195 (30%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ D +I ++ + DS + + ++SPGGS AG AIF + +K Sbjct: 29 IIMLSGQVTDDLANSIIAQLLFLDAQDSEKDIYLYINSPGGSVTAGLAIFDTMNFIKADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A + + L ++ Sbjct: 89 QTIVMGMAASMGSFLLTAGEKGKRFALPNAEIMIHQPLGGAQGQATEIEIAAR------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + ++ +++SE P + T Sbjct: 142 -----------------------HILATRERLNKILSERTGQPIEVIERDTDRDNFMTAQ 178 Query: 217 EAKKVGLIDVVGGQE 231 EAK GLID + Sbjct: 179 EAKDYGLIDEIMESN 193 >gi|256751183|ref|ZP_05492064.1| band 7 protein [Thermoanaerobacter ethanolicus CCSD1] gi|256749908|gb|EEU62931.1| band 7 protein [Thermoanaerobacter ethanolicus CCSD1] Length = 697 Score = 43.1 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 39/275 (14%), Positives = 85/275 (30%), Gaps = 39/275 (14%) Query: 27 WSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 SS V ++I G I + + ++ ++ A+ +++ LS+PGG + Sbjct: 22 SSSKAVPPQSPVYVLSIDGPIVPVVADYIESGLQEAEKN-GASCIVIELSTPGGLYSTTQ 80 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I I V A +A T + S V P + Sbjct: 81 KIVTKILNSPIPVVVYVSP-------------AGAWAGSAGTFITLSANVAAMAPGSRIG 127 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 S ++ Q + + ++E+R Sbjct: 128 A-------------AHPVSMEDDSALSDVQRQKLTHDAAAWIRS----IAENRGRDPKNA 170 Query: 205 L-VLSDGRIWTGAEAKKVGLIDVVGG-QEEVWQSLYALGV---DQSIRKIKDWNPPKNYW 259 + + + +T EA L+D ++ + + L V D +I ++ P K + Sbjct: 171 EMAVIESKSFTDTEALNAHLVDFKATNLNDLLKKINGLTVKNFDGTITTLQTDGPIKYFP 230 Query: 260 FCDLKNLSISSLLEDTIPLMKQTKVQGL-WAVWNP 293 + + + L+ + G+ +++P Sbjct: 231 MSSAQKFLFAISDPNIAYLLMSAGILGIVLELYHP 265 >gi|222087754|ref|YP_002546291.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Agrobacterium radiobacter K84] gi|221725202|gb|ACM28358.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Agrobacterium radiobacter K84] Length = 214 Score = 43.1 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 26/196 (13%), Positives = 66/196 (33%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D+ + ++ + ++S + + ++SPGG +G A++ ++ ++ Sbjct: 40 IIFLNGEVNDTVSALVCAQLLFLEAENSRKPISLYINSPGGVVTSGLAMYDTMRYIRAPV 99 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L++ + A S + L + + ++ Sbjct: 100 HTLCMGTARSMGSFLLMAGQAGERSALPNSSIHIHQPLGGFQGQASDMLIHAAEME---- 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216 + H RL +E Y++ + T Sbjct: 156 --------------------------RTKHRMTRLYAEHCGRTYEEFERAMDRDHFMTAE 189 Query: 217 EAKKVGLIDVVGGQEE 232 +A + GLID + E Sbjct: 190 QALEWGLIDRILQVRE 205 >gi|226311381|ref|YP_002771275.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus brevis NBRC 100599] gi|226094329|dbj|BAH42771.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus brevis NBRC 100599] Length = 193 Score = 42.7 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 63/187 (33%), Gaps = 33/187 (17%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 I +I + ++ ++ + +D + + ++SPGGS AG AI+ +Q +K I Sbjct: 34 EIDDEIANL--IVAQLLFLQAEDPDKDISLYINSPGGSVTAGMAIYDTMQYIKPDVSTIC 91 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + A L + A A + V L Sbjct: 92 VGMAASMGAFLLAAGAKGKRFALPNAEVMIHQPLGGVRGQ-------------------- 131 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKK 220 + +++ + + + ++SE PY++ + EAK Sbjct: 132 ----------AEDIRIHAEWIMKTKRQLNEILSERTGQPYERVEQDTDRDNFMSAEEAKA 181 Query: 221 VGLIDVV 227 GLID + Sbjct: 182 YGLIDSI 188 >gi|167461037|ref|ZP_02326126.1| serine protease (phage related-protein, ClpP family) [Paenibacillus larvae subsp. larvae BRL-230010] Length = 238 Score = 42.7 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 34/239 (14%), Positives = 69/239 (28%), Gaps = 41/239 (17%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + E ++R+ + + + ++SPGGS + G AI +++ K V V +A Sbjct: 27 TSAASFKEDLDRLGD---LSTINLYINSPGGSVFEGIAIHNMLKRHKAN--VHVYVDALA 81 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 AS +I+ A + I + S++ + Sbjct: 82 ASIASVIAMAGDTIYMPKNSMLMIHN----------------------------PWIFAW 113 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDV 226 + + L + +K + D W + EA + GL D Sbjct: 114 GNASEMRKIADDLDRIGNSSKQTYLQKAGDKLSDEKLQEMLDAETWLSADEAFEYGLCD- 172 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 V Q + S I + + + + ++K Sbjct: 173 ------VVQEANTMAASISDEFINRYKNVPKQLISQQQTPISVGDMAKRQQIADESKEN 225 >gi|260769269|ref|ZP_05878202.1| nfed family protein [Vibrio furnissii CIP 102972] gi|260614607|gb|EEX39793.1| nfed family protein [Vibrio furnissii CIP 102972] Length = 446 Score = 42.7 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 77/216 (35%), Gaps = 22/216 (10%) Query: 12 YVMLSLVTLTVVYFSWSSHV-EDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA 68 ++ SL++ + + + +++ S V IAI G I + +I+ ++R ++ + A Sbjct: 8 VLLTSLLSFSTLATADTTNAPAAPSQTVPVIAISGAIGPAVGDYVIKELQRANQQVNTPA 67 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 +IV+L +PGG + I + I + +A T + Sbjct: 68 VIVTLDTPGGLSSTLRDINQHILASDIPVLCLVYP-------------PGARAASAGTYI 114 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 + + + P LG + P + + + + DS + Sbjct: 115 LYACHIAAMAPATT-----LGAATPVQIGGPSPGGGEQQDKPSEPTAMEKKVLNDSIAYI 169 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLI 224 RN+ + + + D + EA ++ +I Sbjct: 170 RSLAQLRGRNVEWAE-KAVRDAATLSAIEALEMNVI 204 >gi|260460897|ref|ZP_05809147.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesorhizobium opportunistum WSM2075] gi|259033474|gb|EEW34735.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesorhizobium opportunistum WSM2075] Length = 209 Score = 42.7 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 59/199 (29%), Gaps = 33/199 (16%) Query: 40 RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G +ED + ++ + ++ + + ++SPGG +G AI+ +Q +K Sbjct: 37 IIFITGPVEDGMATLVCAQLLFLEAENPKKEINLYINSPGGVVTSGMAIYDTMQFIKPAV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + ++ A + + Sbjct: 97 STLCIGQAASMGSLLLTAGHKDMRFATPNARIMVHQPSG--------------------- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + Y++ L T Sbjct: 136 -------GFQGQASDIERHAQD--IIKLKRRLNEVYVKHTGKSYEEIEKTLDRDHFMTAD 186 Query: 217 EAKKVGLIDVVGGQEEVWQ 235 EA+ GLID V E + Sbjct: 187 EARDFGLIDKVISSREAAE 205 >gi|154707166|ref|YP_001423941.1| non-proteolytic membrane spanning protein, peptidase family S49 [Coxiella burnetii Dugway 5J108-111] gi|154356452|gb|ABS77914.1| non-proteolytic membrane spanning protein, peptidase family S49 [Coxiella burnetii Dugway 5J108-111] Length = 458 Score = 42.7 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 74/232 (31%), Gaps = 23/232 (9%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVAR-IAIRGQI--EDSQELIERIERIS 61 K+I R + ++T ++ + ++N+ +A I I+G I + +++ + Sbjct: 4 RKRIFIRRFYILMLTFGLLGIASHIIAQNNTRRLAILIDIKGGIGPATADFFHRSLKQAT 63 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 A +I+ L +PGG A A I + I + + A + Sbjct: 64 E-KKAQVIILQLDTPGGLATAMRDIIKDILA---------------SPIPVIGYVAPSGA 107 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS---PMKAEPSPFSEVNPKAVQMM 178 AA L E ++ P Sbjct: 108 HAASAGTYILYATHIAAMAPGTNLGAATPIAIGTPGGSSPEKGNEKKEGAKKAPAQKTAA 167 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229 + S ++R +++ R + + + + EA K+ +I+++ Sbjct: 168 EKKAISDARAYIRSLAQLRGRNVEWAESAVVEAESLSAEEAYKIKVINIIAS 219 >gi|238795542|ref|ZP_04639057.1| ATP-dependent Clp protease proteolytic subunit [Yersinia mollaretii ATCC 43969] gi|238720661|gb|EEQ12462.1| ATP-dependent Clp protease proteolytic subunit [Yersinia mollaretii ATCC 43969] Length = 194 Score = 42.7 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 60/196 (30%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + + ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 29 IIFLTGQVEDHMANLITAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + ++ Sbjct: 89 STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHARE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 143 ------------------------ILKVKSRMNELMALHTGKSLEEIERDTERDRFLSAE 178 Query: 217 EAKKVGLIDVVGGQEE 232 EA GL+D V + + Sbjct: 179 EAVGYGLVDSVFTRRD 194 >gi|86739912|ref|YP_480312.1| ClpP1 peptidase. Serine peptidase. MEROPS family S14 [Frankia sp. CcI3] gi|108935915|sp|Q2JDQ9|CLPP1_FRASC RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; AltName: Full=Endopeptidase Clp 1 gi|86566774|gb|ABD10583.1| ATP-dependent Clp protease proteolytic subunit ClpP [Frankia sp. CcI3] Length = 213 Score = 42.7 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 62/186 (33%), Gaps = 33/186 (17%) Query: 43 IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102 + I ++ + ++ ++ +D + + ++SPGGS AG AI+ +Q V+N ++ Sbjct: 46 VEDSIANA--ICAQLLLLNAEDPTRDIFLYINSPGGSVSAGMAIYDTMQFVENDVATVSL 103 Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 + L + AS + + + Sbjct: 104 GLAASMGQFLLCAGASGKRYSLPHARIMMHQPSGGIGG---------------------- 141 Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKV 221 + + + + + ++ P ++ SD R +T EAK Sbjct: 142 --------TASDIAIQAEQMLYTKRMMQERIAFHTGQPIEQIERDSDRDRWFTAEEAKDY 193 Query: 222 GLIDVV 227 G +D V Sbjct: 194 GFVDHV 199 >gi|307718289|ref|YP_003873821.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta thermophila DSM 6192] gi|306532014|gb|ADN01548.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta thermophila DSM 6192] Length = 206 Score = 42.7 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 60/190 (31%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G+I D + ++ ++ + D + V +++PGGS AG AI+ +Q VK Sbjct: 34 IVFIDGEINDLTADLVVAQLLFLESQDPEKDISVYINTPGGSVTAGLAIYDTMQYVKPDV 93 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + +A +S + + + + Sbjct: 94 QTICLGQAASMGALLLTAGTPGKRLALPSSRILIHQPWGGVQGQATDISIQAREMVRI-- 151 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 +++ V++ L T E Sbjct: 152 -----------------KKLLIHYFARHTGRPEEEVAQ----------DLERDYYMTPEE 184 Query: 218 AKKVGLIDVV 227 AK GLID + Sbjct: 185 AKAYGLIDDI 194 >gi|325674309|ref|ZP_08153998.1| Clp protease [Rhodococcus equi ATCC 33707] gi|325554989|gb|EGD24662.1| Clp protease [Rhodococcus equi ATCC 33707] Length = 376 Score = 42.7 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 63/181 (34%), Gaps = 37/181 (20%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 +Q + E+I+ I+ D+ + V ++SPGGSA+ G AI A++ R V+ V +A Sbjct: 32 TSAQAIAEQIKDITADE----ITVRINSPGGSAFDGIAIMNALRAHNAR--VVVHVDGLA 85 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 ASA +I+ A + IV S + S Sbjct: 86 ASAASVIAMAGDEIVMGPGSQMMIHE------------------AWVFTEGDAAFLRSEA 127 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDV 226 ++ L + +D+ L W T EA GL D Sbjct: 128 DRLDK------------MSDSITSLYARRAGGDFDEWRALVAAETWFTAEEAVTAGLADR 175 Query: 227 V 227 + Sbjct: 176 I 176 >gi|15965008|ref|NP_385361.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium meliloti 1021] gi|307301080|ref|ZP_07580849.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium meliloti BL225C] gi|307317814|ref|ZP_07597252.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium meliloti AK83] gi|18202306|sp|P58278|CLPP2_RHIME RecName: Full=ATP-dependent Clp protease proteolytic subunit 2; AltName: Full=Endopeptidase Clp 2 gi|15074187|emb|CAC45834.1| Probable ATP-dependent CLP protease proteolytic subunit [Sinorhizobium meliloti 1021] gi|306896576|gb|EFN27324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium meliloti AK83] gi|306904035|gb|EFN34621.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium meliloti BL225C] Length = 208 Score = 42.7 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 26/199 (13%), Positives = 59/199 (29%), Gaps = 33/199 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + + ++ + ++ + + ++SPGG AG AI+ +Q +K Sbjct: 37 IIFLTGPVEDHMATLVCAQLLFLEAENPKKEVALYINSPGGVVTAGMAIYDTMQFIKPAV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + ++ A S + Sbjct: 97 STLCIGQAASMGSLLLAAGHKDMRFATPNSRIMVHQPSG--------------------- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + Y++ L + Sbjct: 136 -------GFQGQASDIERHA--RDILKMKRRLNEVYVKHCGRTYEEVEQTLDRDHFMSAD 186 Query: 217 EAKKVGLIDVVGGQEEVWQ 235 EA GLID V + + Sbjct: 187 EALDWGLIDKVITSRDAVE 205 >gi|87312030|ref|ZP_01094138.1| hypothetical protein DSM3645_13173 [Blastopirellula marina DSM 3645] gi|87285269|gb|EAQ77195.1| hypothetical protein DSM3645_13173 [Blastopirellula marina DSM 3645] Length = 700 Score = 42.7 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 77/213 (36%), Gaps = 8/213 (3%) Query: 41 IAIRGQIEDSQ--ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 + + G + ++Q +L+ I+ D +++ + SPGG A E++ + K Sbjct: 256 VKLSGGVTNNQVQQLMRLIQSEVSD-KVNLVLIEIDSPGGDPVAVESLMNYLMKQPAEVR 314 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI---KSV 155 + + + AA +++ A + IV A SLVG G + + + K Sbjct: 315 TVALIKQQAAGNAAIVAFACDEIVVATDSLVGGAGAYQYSEQGTTDVRNFLIQVGEKKQR 374 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WT 214 + S A P EV + + ++ + + ++ + T Sbjct: 375 RWSAWAAMCDPQLEVANYRHKQSGLTALFCAEELQQQIAPD-QWEQTEVITIAGQPLELT 433 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 G +A + L+D + Y + + S Sbjct: 434 GGQAFDLRLVDAIAADATDVARRYGVSGEISTP 466 >gi|296136117|ref|YP_003643359.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thiomonas intermedia K12] gi|295796239|gb|ADG31029.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thiomonas intermedia K12] Length = 202 Score = 42.7 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D ++ ++ + ++ + + ++SPGGS AG AIF +Q +K Sbjct: 37 VIFLVGPINDQMANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPDV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A + + A + S + ++ Sbjct: 97 STLCTGIAASMGAFLMAAGAKGKRYSLPNSRIMIHQPSGGAQGQATDIE----------- 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + +++E +K + + Sbjct: 146 -------------------IQAREILYLRERLNGILAERTGQTLEKIGIDTERDFFMSAE 186 Query: 217 EAKKVGLIDVV 227 EAK GLID V Sbjct: 187 EAKDYGLIDEV 197 >gi|212716951|ref|ZP_03325079.1| hypothetical protein BIFCAT_01895 [Bifidobacterium catenulatum DSM 16992] gi|212660236|gb|EEB20811.1| hypothetical protein BIFCAT_01895 [Bifidobacterium catenulatum DSM 16992] Length = 233 Score = 42.7 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 30/181 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D +++ ++SPGGS A AI+ +Q +K + + Sbjct: 77 TSADDIMAQLLVLESQDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 136 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + A + + V + K Sbjct: 137 AAAILLAAGAKGKRLMLPNARVLIHQPAIDQGFGKA------------------------ 172 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226 +++ + W +++ +K + T EAK+ G++D Sbjct: 173 -----TEIEIQAKEMLRMREWLENTLAKHTGRDVEKIRKDIEVDTFLTAPEAKEYGIVDE 227 Query: 227 V 227 V Sbjct: 228 V 228 >gi|157414262|ref|YP_001485128.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT 9215] gi|157388837|gb|ABV51542.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT 9215] Length = 214 Score = 42.7 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 60/179 (33%), Gaps = 31/179 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 S L+ ++ + +D + + ++SPGGS AG AI+ +Q++ I + Sbjct: 63 SDSLVAQLLFLEAEDPEKDIQIYINSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMG 122 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L A +A S + L ++ Sbjct: 123 AFLLSGGAKGKRLALPNSRIMIHQPLGGAQGQAVEIE----------------------- 159 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 + + L++E P +K ++ + + +EA + GLID V Sbjct: 160 -------IQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEAVEYGLIDKV 211 >gi|167627759|ref|YP_001678259.1| ATP-dependent Clp protease proteolytic subunit [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241668323|ref|ZP_04755901.1| endopeptidase Clp [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876856|ref|ZP_05249566.1| ATP-dependent Clp protease subunit P [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|189082458|sp|B0TZA5|CLPP_FRAP2 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|167597760|gb|ABZ87758.1| Endopeptidase Clp [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254842877|gb|EET21291.1| ATP-dependent Clp protease subunit P [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 201 Score = 42.7 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 58/198 (29%), Gaps = 33/198 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++ D +I ++ + +D + ++SPGG AG ++ +Q +K Sbjct: 32 IVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTMQFIKPDV 91 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L A + +S + L + ++ +I +K Sbjct: 92 NTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKD 151 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216 K + + Sbjct: 152 RLNKVL------------------------------AHHTGQDLETIVRDTDRDNFMMAD 181 Query: 217 EAKKVGLIDVVGGQEEVW 234 EAK+ GLID V E Sbjct: 182 EAKEYGLIDHVIESREAI 199 >gi|161486690|ref|YP_719644.2| ATP-dependent Clp protease proteolytic subunit [Haemophilus somnus 129PT] Length = 193 Score = 42.7 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED ++ ++ + +D A + + ++SPGGS AG AI+ +Q +K Sbjct: 29 VIFLTGEVEDRMANLIVAQLLFLEAEDPAKDINIYINSPGGSVTAGMAIYDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A + V L + Sbjct: 89 RTLCIGQACSMGAFLLAGGTAGKRAALPHARVMIHQPLGGFRGQ---------------- 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 +Q+ + ++ ++ + Sbjct: 133 --------------ASDIQIHAQEILKIKQTLNERLAFHTGQSIEQIEQDTDRDNFMSAE 178 Query: 217 EAKKVGLIDVV 227 +AK GL+D V Sbjct: 179 QAKLYGLVDEV 189 >gi|58978319|gb|AAW83211.1| capsid protein [Wolbachia phage WO] Length = 136 Score = 42.7 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P + ++++ +Q VD Y FV+L++ +R++ +K G + G +A ++GL D Sbjct: 1 PHEPMTSESLESLQKEVDRLYEMFVQLIARNRSLSIEKIRSTEAGLYF-GEKAVEIGLAD 59 Query: 226 VVGGQEEVWQS 236 V E Sbjct: 60 GVTTFFEFINK 70 >gi|75908095|ref|YP_322391.1| hypothetical protein Ava_1874 [Anabaena variabilis ATCC 29413] gi|75701820|gb|ABA21496.1| Protein of unknown function DUF114 [Anabaena variabilis ATCC 29413] Length = 297 Score = 42.7 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 71/183 (38%), Gaps = 14/183 (7%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 IEDS++++ I D ++ +PGG A E I RA+ + + V V Sbjct: 68 TIEDSEQILRAIRLTPPDVPIDLIL---HTPGGLVLATEQIARALIRHSAK--VTVFVPH 122 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 A S G +++ A++ IV +++G + L + + + Sbjct: 123 YAMSGGTMLALAADEIVMDANAVLGPVDPQLGNFPAASILKVVKDKP----IGEIDDQTL 178 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-----WTGAEAKK 220 +++ KA+Q +Q V + + + L+ GR+ T EA + Sbjct: 179 IMADLAAKAIQQVQRFVRTLLKDNIPKQKVNPENIESIIEALTTGRVTHDYPITVEEATE 238 Query: 221 VGL 223 +GL Sbjct: 239 MGL 241 >gi|14590206|ref|NP_142271.1| hypothetical protein PH0282 [Pyrococcus horikoshii OT3] gi|3256671|dbj|BAA29354.1| 280aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 280 Score = 42.7 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 11/178 (6%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+E++ I +D +I +PGG A I +A++ VI + M Sbjct: 73 IEDSEEVLRAIRMAPKDKPIDLII---HTPGGLVLAATQIAKALKDHPAETRVIVPHYAM 129 Query: 107 AASAGYLISCASNIIVAAETSLVGSIG-VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 + G LI+ A++ I+ +++G + L QYP + V + Sbjct: 130 SG--GTLIALAADKIIMDPHAVLGPVDPQLGQYPAPSIVRAVEKKGVDKVDDQTLILADV 187 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 + + + D + +++ + T EAKK+GL Sbjct: 188 AEKAIRQVRDFIFNLLKDKYGEEKAKELAQ-----VLTEGRWTHDYPITVEEAKKLGL 240 >gi|332977273|gb|EGK14064.1| ATP-dependent Clp protease, protease subunit [Psychrobacter sp. 1501(2011)] Length = 240 Score = 42.7 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED+ ++ ++ + ++ + + ++SPGGS AG A+F + +K Sbjct: 71 VIFLTGQVEDNMANLIVAQMLFLEAENPDKDIHLYINSPGGSVSAGLAMFDTMNFIKPDV 130 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A S V ++ I + Sbjct: 131 STICMGGAYSMGSFLLAAGQKGKRYALANSRVMIHQPSGGAQGQATDIEINAREILKI-- 188 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 R+++E P +K + W Sbjct: 189 ----------------------------RDRLNRILAERTGQPLEKIERDVERDYWLDAQ 220 Query: 217 EAKKVGLIDVV 227 EAK+ GL+D V Sbjct: 221 EAKEYGLVDEV 231 >gi|298714280|emb|CBJ27396.1| chloroplast clp protease P [Ectocarpus siliculosus] Length = 264 Score = 42.7 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 60/176 (34%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 L+ ++ ++ DD + + ++SPGGS AG AI+ +Q + + + A Sbjct: 102 LVAQLLYLANDDPEKDITLYINSPGGSVSAGLAIYDTMQFIPCDVATVCFGMAASMGAFL 161 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + ++ + S + L ++ Sbjct: 162 LGAGSAGKRKSLPNSRIMIHQPLGGAAGQAADIE-------------------------- 195 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 + + + +SE + P DK +D + T EA + GLID V Sbjct: 196 ----IQAKEILFTKRLLNGYMSEYTDQPADKIEEDTDRDFFMTPIEAMEYGLIDEV 247 >gi|323499265|ref|ZP_08104242.1| hypothetical protein VISI1226_03565 [Vibrio sinaloensis DSM 21326] gi|323315653|gb|EGA68687.1| hypothetical protein VISI1226_03565 [Vibrio sinaloensis DSM 21326] Length = 434 Score = 42.7 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 80/237 (33%), Gaps = 25/237 (10%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSL 73 L+ + + V P V I+I G I + Q +IE I R ++ S ALI+++ Sbjct: 1 MLLLCFSAFIAAEEAVPSKPPTVPLISIDGAIGPAVGQYVIEEIARANKVGS-PALIITI 59 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 +PGG + I +AI + + +A T ++ + Sbjct: 60 DTPGGLVTSLRDINQAILNSQIPILCLVHP-------------QGARAASAGTFILYACH 106 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + P LG + P + S + + + +L Sbjct: 107 IAAMAPATS-----LGAATPVSIGGPSPTQKEQESSEPSAMENKVLNDSIAYIRSLAQL- 160 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSLYALGVDQSIRKI 249 RN + + + D + EA +I+++ +++ L V+ + + Sbjct: 161 -RGRNAEWAE-EAVRDAATLSATEALDNNVINLLADSPQDLLNKLNGQEVEVNQASV 215 >gi|116250938|ref|YP_766776.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium leguminosarum bv. viciae 3841] gi|116243107|sp|Q1MK43|CLPP1_RHIL3 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; AltName: Full=Endopeptidase Clp 1 gi|115255586|emb|CAK06667.1| putative ATP-dependent Clp protease proteolytic subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 203 Score = 42.7 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 26/196 (13%), Positives = 66/196 (33%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D+ + ++ + ++S + + ++SPGG +G A++ ++ ++ Sbjct: 33 IIFLNGEVNDTVSALVCAQLLFLEAENSKKPINLYINSPGGVVTSGLAMYDTMRFIRAPV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + + + + G G P + + + Sbjct: 93 --------------HTLCMGTARSMGSFLLMAGEAGGRAALPNASILIHQPSGGFQG--- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + RL +E Y+ + R T Sbjct: 136 -------------QASDMMIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAE 182 Query: 217 EAKKVGLIDVVGGQEE 232 EA + GLID + E Sbjct: 183 EALEWGLIDRILTVRE 198 >gi|158317029|ref|YP_001509537.1| ATP-dependent Clp protease proteolytic subunit [Frankia sp. EAN1pec] gi|158112434|gb|ABW14631.1| Endopeptidase Clp [Frankia sp. EAN1pec] Length = 214 Score = 42.7 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 31/181 (17%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + +D + + ++SPGGS + AI+ +Q V+ I + Sbjct: 51 TSANDVMAQLLFLESEDPDRDISIYINSPGGSFTSLTAIYDTMQFVRPDIQTICMGQAAS 110 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + A + S + Q ++ Sbjct: 111 AAAVLLAAGTPGKRFALQNSRILIHQPSAQGEGQSSDIE--------------------- 149 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226 + + +++E + + +I++ EAK G+ID Sbjct: 150 ---------IQAREILRMRSLLEHMLAEHTGRTEEAVRKDIERDKIFSADEAKDYGIIDE 200 Query: 227 V 227 V Sbjct: 201 V 201 >gi|296112317|ref|YP_003626255.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella catarrhalis RH4] gi|295920011|gb|ADG60362.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella catarrhalis RH4] Length = 217 Score = 42.7 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED+ ++ ++ + D+ + + ++SPGG AG AI+ + +K Sbjct: 49 VIFLTGQVEDNMANLIVAQLLFLEADNPEKDIHLYINSPGGVVTAGMAIYDTMNFIKPHV 108 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A S V L + ++ I + Sbjct: 109 STICMGQAASMGSFLLSAGEKGKRYALANSRVMIHQPLGGFRGQASDIEIHAREIIEL-- 166 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 RL++E P +K + Sbjct: 167 ----------------------------KAKLNRLLAEHTGQPIEKLERDTDRDHFMSAE 198 Query: 217 EAKKVGLIDVVGG 229 +A+ GL+DVV Sbjct: 199 QARDYGLVDVVLD 211 >gi|118474160|ref|YP_892812.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter fetus subsp. fetus 82-40] gi|118413386|gb|ABK81806.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter fetus subsp. fetus 82-40] Length = 196 Score = 42.7 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+IED+ ++ ++ + +D + + ++SPGG +G +I+ + +K Sbjct: 30 IIMLSGEIEDAMASAIVAQMLFLEAEDPDKDIYLYINSPGGVVTSGFSIYDTMNYIKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A S + L ++ Sbjct: 90 CTICIGQAASMGAFLLSCGTKGKRYALPNSRIMIHQPLGGARGQATDIE----------- 138 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + ++++ K +D + + Sbjct: 139 -------------------IQAKEILRLKEVLNSTLAKNTGQKLAKIAKDTDRDFFMSAH 179 Query: 217 EAKKVGLIDVV 227 EA + GLID V Sbjct: 180 EAAEYGLIDNV 190 >gi|260427575|ref|ZP_05781554.1| Clp protease [Citreicella sp. SE45] gi|260422067|gb|EEX15318.1| Clp protease [Citreicella sp. SE45] Length = 210 Score = 42.7 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 23/200 (11%), Positives = 61/200 (30%), Gaps = 33/200 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ A + + ++SPGG +G +I+ +Q +K + Sbjct: 38 IIFVSGPVHDGMSSLIVAQLLHLEAENPAKEISMYINSPGGVVTSGLSIYDTMQYIKPKI 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + + S + Y Sbjct: 98 STLVIGQAASMGSLLLTAGEAGMRFSLPNSRIMVHQPSGGYQGQ---------------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + + + +K L + Sbjct: 142 --------------ATDIMIHAEETLKLKRRLNEIYVRHTGQTLEKVEAALERDNFMSPE 187 Query: 217 EAKKVGLIDVVGGQEEVWQS 236 +AK+ GLID + ++ Sbjct: 188 DAKEWGLIDEIVESRGAAEA 207 >gi|123969397|ref|YP_001010255.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. AS9601] gi|126697184|ref|YP_001092070.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT 9301] gi|123199507|gb|ABM71148.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. AS9601] gi|126544227|gb|ABO18469.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT 9301] Length = 214 Score = 42.7 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 60/179 (33%), Gaps = 31/179 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 S L+ ++ + +D + + ++SPGGS AG AI+ +Q++ I + Sbjct: 63 SDSLVAQLLFLEAEDPEKDIQIYINSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMG 122 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L A +A S + L ++ Sbjct: 123 AFLLSGGAKGKRLALPNSRIMIHQPLGGAQGQAVEIE----------------------- 159 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 + + L++E P +K ++ + + +EA + GLID V Sbjct: 160 -------IQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEAVEYGLIDKV 211 >gi|115359135|ref|YP_776273.1| hypothetical protein Bamb_4387 [Burkholderia ambifaria AMMD] gi|115284423|gb|ABI89939.1| protein of unknown function DUF107 [Burkholderia ambifaria AMMD] Length = 525 Score = 42.7 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 23/201 (11%), Positives = 55/201 (27%), Gaps = 11/201 (5%) Query: 38 VARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI----- 90 V I + G I + ++ +ER + D + A+ + L +PGG + I +AI Sbjct: 60 VIVIPVNGAIGPASADFIVRSLERAAHDHAPLAI-LQLDTPGGLDTSMRQIIKAILGSPV 118 Query: 91 --QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 ++ + S V Sbjct: 119 PVAAFVAPGGARAASAGTYIVYASHVAAMAPGTNLGAASPVQFGIGGGAPGTPGTPGTPR 178 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVL 207 + + S + ++R +++ R + + Sbjct: 179 PSPAGTSGAGGASGASSTPVALPNDTQSTEIRKATQDAAAYIRGLAQLRGRNAEWAERAV 238 Query: 208 SDGRIWTGAEAKKVGLIDVVG 228 + + EA+ ++D++ Sbjct: 239 REAVSLSANEARAQHVVDLIA 259 >gi|289192055|ref|YP_003457996.1| protein of unknown function DUF114 [Methanocaldococcus sp. FS406-22] gi|288938505|gb|ADC69260.1| protein of unknown function DUF114 [Methanocaldococcus sp. FS406-22] Length = 281 Score = 42.7 bits (98), Expect = 0.062, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 71/182 (39%), Gaps = 12/182 (6%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 IEDS+E++ I +D +I +PGG A I +A++ VI + Sbjct: 72 TIEDSEEILRAIRTAPKDKPIDLII---HTPGGLVLAATQIAKALKAHPAETRVIVPHYA 128 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIG-VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 M+ G LI+ A++ I+ E +++G + L QYP + V + Sbjct: 129 MSG--GTLIALAADKIIMDENAVLGPVDPQLGQYPAPSIVKAVEQKGVDKVDDQTLILAD 186 Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL- 223 +N + + D + +S+ + + T EAKK+GL Sbjct: 187 IAKKAINQVQNFVYSLLKDKYGEEKAKELSK----TLTEGR-WTHDYPITVEEAKKLGLD 241 Query: 224 ID 225 +D Sbjct: 242 VD 243 >gi|257126078|ref|YP_003164192.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leptotrichia buccalis C-1013-b] gi|257050017|gb|ACV39201.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia buccalis C-1013-b] Length = 203 Score = 42.7 bits (98), Expect = 0.062, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED + ++ ++ + D+ +++ ++SPGG AG AI+ ++ +K+ Sbjct: 42 IIFVSGEVEDGMANAIVAQLLFLDAQDNEKDIVMYINSPGGVITAGLAIYDTMRHIKSDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A + S + L Sbjct: 102 STVCVGQAASMGAVLLSAGAKGKRYSLPNSRIMIHQPLG--------------------- 140 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + +++SE+ ++ + Sbjct: 141 GARGQATDIQIQAKEIERM---------KEITSKILSEATGKSVEEIYADTERDNFMSPE 191 Query: 217 EAKKVGLIDVV 227 EA GLID + Sbjct: 192 EAVNYGLIDKI 202 >gi|330948407|gb|EGH48667.1| peptidase S49, SppA [Pseudomonas syringae pv. pisi str. 1704B] Length = 85 Score = 42.7 bits (98), Expect = 0.063, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 2/85 (2%) Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 V +DKLGV ++ S KA PF Q Q V+D+++ F+ V Sbjct: 1 VTAAGFGFVGAMDKLGVDRRTYTSGEHKAFLDPFQPQKADETQFWQGVLDTTHRQFIASV 60 Query: 194 SESRNIPYDKTL--VLSDGRIWTGA 216 + R L G IWTG Sbjct: 61 KQGRGDRLKDKEHPELFSGLIWTGE 85 >gi|212224654|ref|YP_002307890.1| hypothetical protein TON_1503 [Thermococcus onnurineus NA1] gi|212009611|gb|ACJ16993.1| Hypothetical protein TON_1503 [Thermococcus onnurineus NA1] Length = 280 Score = 42.7 bits (98), Expect = 0.063, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 67/203 (33%), Gaps = 25/203 (12%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+E++ I +D +I +PGG A I RA++ VI + M Sbjct: 74 IEDSEEILRAIRMAPKDKPIDLII---HTPGGLVLAATQIARALKDHPAETRVIVPHYAM 130 Query: 107 AASAGYLISCASNIIVAAETSLVGSIG-VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 + G LI+ A++ I+ +++G + L QYP V + Sbjct: 131 SG--GTLIALAADKIIMDPHAVLGPVDPQLGQYPGPSIVRAVEKKGPDKVDDQTLILADV 188 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAK 219 + + + D + + WT AK Sbjct: 189 AEKAIKQVRDLVFDLLKDRYGEE-----------KAKELAQILTEGRWTHDYPITYEHAK 237 Query: 220 KVGLIDVVGGQEE--VWQSLYAL 240 ++GL G EE LY Sbjct: 238 ELGLHVETGVPEEVYALMELYKQ 260 >gi|254460423|ref|ZP_05073839.1| Clp protease [Rhodobacterales bacterium HTCC2083] gi|206677012|gb|EDZ41499.1| Clp protease [Rhodobacteraceae bacterium HTCC2083] Length = 210 Score = 42.7 bits (98), Expect = 0.063, Method: Composition-based stats. Identities = 23/191 (12%), Positives = 58/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + + ++SPGG +G +I+ +Q ++ + Sbjct: 38 IIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIRPKV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + ++ + S V Y Sbjct: 98 STLVIGQAASMGSLLLTAGEKDMRFSLPNSRVMVHQPSGGYQGQ---------------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + + + K L + Sbjct: 142 --------------ATDIMIHAQETQKLKTRLNEIYVQHTGQTLKKVEAALERDNFMSPE 187 Query: 217 EAKKVGLIDVV 227 EAK+ GLID + Sbjct: 188 EAKEFGLIDEI 198 >gi|86605879|ref|YP_474642.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus sp. JA-3-3Ab] gi|115311348|sp|Q2JV68|CLPP2_SYNJA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2; AltName: Full=Endopeptidase Clp 2 gi|86554421|gb|ABC99379.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus sp. JA-3-3Ab] Length = 200 Score = 42.7 bits (98), Expect = 0.063, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 58/180 (32%), Gaps = 31/180 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGGS YAG AI+ +Q ++ I + A Sbjct: 42 IVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFL 101 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L A +A + + L ++ I + Sbjct: 102 LAGGAKGKRIALPHARIMIHQPLGGAQGPATDIEIQAKEILFI----------------- 144 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231 + L++ P ++ T +AK+ GLID V + Sbjct: 145 -------------KNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKEYGLIDQVITRR 191 >gi|66044992|ref|YP_234833.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. syringae B728a] gi|71733685|ref|YP_273935.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|237803596|ref|ZP_04591181.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. oryzae str. 1_6] gi|257483815|ref|ZP_05637856.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627504|ref|ZP_06460458.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649945|ref|ZP_06481288.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. aesculi str. 2250] gi|289679415|ref|ZP_06500305.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. syringae FF5] gi|298486263|ref|ZP_07004326.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301384120|ref|ZP_07232538.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. tomato Max13] gi|302059517|ref|ZP_07251058.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. tomato K40] gi|302135032|ref|ZP_07261022.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302187983|ref|ZP_07264656.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. syringae 642] gi|38257468|sp|Q87YR6|CLPP_PSESM RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|81308384|sp|Q4ZVM7|CLPP_PSEU2 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|110816461|sp|Q48KZ0|CLPP_PSE14 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|63255699|gb|AAY36795.1| Peptidase S14, ClpP [Pseudomonas syringae pv. syringae B728a] gi|71554238|gb|AAZ33449.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas syringae pv. phaseolicola 1448A] gi|298159270|gb|EFI00328.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325361|gb|EFW81428.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. glycinea str. B076] gi|320327654|gb|EFW83662.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. glycinea str. race 4] gi|330868375|gb|EGH03084.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330878772|gb|EGH12921.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330882125|gb|EGH16274.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. glycinea str. race 4] gi|330889997|gb|EGH22658.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. mori str. 301020] gi|330897794|gb|EGH29213.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. japonica str. M301072PT] gi|330939706|gb|EGH43001.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. pisi str. 1704B] gi|330952797|gb|EGH53057.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae Cit 7] gi|330959387|gb|EGH59647.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. maculicola str. ES4326] gi|330963320|gb|EGH63580.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. actinidiae str. M302091] gi|330972589|gb|EGH72655.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. aceris str. M302273PT] gi|330985639|gb|EGH83742.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012679|gb|EGH92735.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331019229|gb|EGH99285.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. lachrymans str. M302278PT] gi|331025578|gb|EGI05634.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. oryzae str. 1_6] Length = 213 Score = 42.7 bits (98), Expect = 0.063, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 59/197 (29%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 45 VIFMVGPVEDYMANLIAAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A S + L + +D I ++ Sbjct: 105 STICIGQACSMGAFLLAGGAEGKRHCLPNSRMMIHQPLGGFQGQASDIDIHAKEILHIRH 164 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L++ + + Sbjct: 165 ------------------------------RLNSLLAHHTGQSLETIERDTERDNFMSAE 194 Query: 217 EAKKVGLIDVVGGQEEV 233 A + GLID V + ++ Sbjct: 195 RAAEYGLIDSVINKRQM 211 >gi|83954269|ref|ZP_00962989.1| Protease subunit of ATP-dependent Clp protease [Sulfitobacter sp. NAS-14.1] gi|83841306|gb|EAP80476.1| Protease subunit of ATP-dependent Clp protease [Sulfitobacter sp. NAS-14.1] Length = 219 Score = 42.7 bits (98), Expect = 0.064, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 58/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + + ++SPGG +G +I+ +Q +K + Sbjct: 38 IIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + S V Y Sbjct: 98 STLVIGQAASMGSLLLQAGEKGMRFSLPNSRVMVHQPSGGYQGQ---------------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + + + P +K L + Sbjct: 142 --------------ATDIMIHAQETQKLKTRLNEIYVKHTGQPLEKVEAALERDNFMSPE 187 Query: 217 EAKKVGLIDVV 227 EAK GLID + Sbjct: 188 EAKDWGLIDEI 198 >gi|67923459|ref|ZP_00516936.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501] gi|67854694|gb|EAM49976.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501] Length = 262 Score = 42.7 bits (98), Expect = 0.064, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 63/185 (34%), Gaps = 31/185 (16%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + ++ ++ + +D + + ++SPGGS YAG AI+ +Q+++ I + Sbjct: 97 ADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMG 156 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L +A +S + L ++ I + Sbjct: 157 AFLLSGGTKGKRMALPSSRIMIHQPLGGAQGQAVEIEIQAKEILYI-------------- 202 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228 +++E P+D ++ + + EA GLID V Sbjct: 203 ----------------KKRLNDMLAEHTGQPFDTIAADTERDFFMSAQEAVDYGLIDKVI 246 Query: 229 GQEEV 233 + ++ Sbjct: 247 SRSDL 251 >gi|297571128|ref|YP_003696902.1| endopeptidase Clp [Arcanobacterium haemolyticum DSM 20595] gi|296931475|gb|ADH92283.1| Endopeptidase Clp [Arcanobacterium haemolyticum DSM 20595] Length = 238 Score = 42.7 bits (98), Expect = 0.065, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 57/176 (32%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 + ++ ++ +D + + ++SPGGS AG AIF +Q +K + + Sbjct: 70 ICAQLLLLAAEDPEKDIYLYINSPGGSVTAGMAIFDTMQYIKPDVATVGMGLAASMGQFL 129 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A + V L Sbjct: 130 LTAGAKGKRYITPHTRVLMHQPLGGAGG------------------------------TA 159 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 +++ D++ L ++ ++ LV SD W T EA + G +D + Sbjct: 160 TEIRINADLILQMKQELSELNAKHTGKSVEQILVDSDRDHWFTAREALEYGFVDHI 215 >gi|50120087|ref|YP_049254.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium atrosepticum SCRI1043] gi|60389567|sp|Q6D827|CLPP_ERWCT RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|49610613|emb|CAG74058.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium atrosepticum SCRI1043] Length = 207 Score = 42.7 bits (98), Expect = 0.065, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 IIFLTGQVEDYMANLVVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A + S V L + ++ Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L+++ P + R + + Sbjct: 156 ------------------------ILKVKAKMNELMAKHTGQPLEAIERDTERDRFLSAS 191 Query: 217 EAKKVGLIDVV 227 EA + GL+D V Sbjct: 192 EAVEYGLVDSV 202 >gi|223042116|ref|ZP_03612288.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus minor 202] gi|240950344|ref|ZP_04754614.1| ATP-dependent Clp protease proteolytic subunit ClpP [Actinobacillus minor NM305] gi|223017093|gb|EEF15533.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus minor 202] gi|240295155|gb|EER45974.1| ATP-dependent Clp protease proteolytic subunit ClpP [Actinobacillus minor NM305] Length = 197 Score = 42.7 bits (98), Expect = 0.065, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 61/195 (31%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED+ ++ ++ + +D + + ++SPGG AG AI+ + +K Sbjct: 29 IIFLNGQVEDNMANLIVAQLLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMNFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A A + V L Sbjct: 89 ATLCTGQACSMGAFLLSGGAKGKRFALPNARVMIHQPLGGARGQ---------------- 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 +Q+ + R ++E +DK + Sbjct: 133 --------------ATDIQIQAQEILKLKEMLTRKMAEHSGQSFDKVAADTERDNFMSAE 178 Query: 217 EAKKVGLIDVVGGQE 231 EAK+ GLID V Sbjct: 179 EAKEYGLIDKVLTSR 193 >gi|254282219|ref|ZP_04957187.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma proteobacterium NOR51-B] gi|219678422|gb|EED34771.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma proteobacterium NOR51-B] Length = 220 Score = 42.7 bits (98), Expect = 0.065, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q VK Sbjct: 50 VIFVVGGIEDHMANLIVAQLLFLESENPDKDIHIYINSPGGSVTAGLSIYDTMQFVKPDV 109 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A + ++ Sbjct: 110 STMCIGQAASMGAFLLSGGAKGKRYILPNARTMIHQPSGGAQGQASDIE----------- 158 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + RL+++ + R + Sbjct: 159 -------------------IQAKEILYLRERLNRLMADHTGQTLETIERDTERDRFMSAE 199 Query: 217 EAKKVGLIDVV 227 ++ + GL+D V Sbjct: 200 QSVEYGLVDEV 210 >gi|84515416|ref|ZP_01002778.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Loktanella vestfoldensis SKA53] gi|84510699|gb|EAQ07154.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Loktanella vestfoldensis SKA53] Length = 198 Score = 42.7 bits (98), Expect = 0.065, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + ++SPGG +G +I+ +Q +K + Sbjct: 29 IIFLNGPVHDGMSQLVVAQLLHLESENPKKEISMYINSPGGVVTSGLSIYDTMQYIKPK- 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + +V + + +GS+ + +P ++ L V + Sbjct: 88 --------------------VSTLVIGQAASMGSLLLTAGHPGMRFSLPNSRVMVHQPSG 127 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + P K L + Sbjct: 128 GYQGQATDIMIHAAETQK---------LKTRLNEIYVKHTGQPLKKVETALERDNFMSPE 178 Query: 217 EAKKVGLIDVV 227 EAK+ GLID + Sbjct: 179 EAKEWGLIDEI 189 >gi|93007058|ref|YP_581495.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Psychrobacter cryohalolentis K5] gi|92394736|gb|ABE76011.1| ATP-dependent Clp protease proteolytic subunit ClpP [Psychrobacter cryohalolentis K5] Length = 231 Score = 42.7 bits (98), Expect = 0.065, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG AIF + +K Sbjct: 63 VIFLTGQVEDHMANLIVAQLLFLEAENPDKDIHLYINSPGGSVSAGLAIFDTMNFIKPEV 122 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A + V ++ Sbjct: 123 STICMGGAYSMGSFLLAAGEKGKRYALANARVMIHQPSGGAQGQATDIEINARE------ 176 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 + + +++E P DK + W Sbjct: 177 ------------------------ILKTRARLNEILAERTGQPVDKIEKDVERDYWLDAK 212 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 213 EAKEYGLIDEV 223 >gi|261822507|ref|YP_003260613.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium wasabiae WPP163] gi|261606520|gb|ACX89006.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pectobacterium wasabiae WPP163] Length = 207 Score = 42.7 bits (98), Expect = 0.066, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 IIFLTGQVEDHMANLVVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A + S V L + ++ Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L+++ P + R + + Sbjct: 156 ------------------------ILKVKAKMNELMAKHTGQPLEAIERDTERDRFLSAS 191 Query: 217 EAKKVGLIDVV 227 EA + GL+D V Sbjct: 192 EAVEYGLVDSV 202 >gi|294635324|ref|ZP_06713821.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Edwardsiella tarda ATCC 23685] gi|291091300|gb|EFE23861.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Edwardsiella tarda ATCC 23685] Length = 194 Score = 42.7 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 29 IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A S V L + ++ I S+K Sbjct: 89 STICMGQACSMGSFLLAAGAQGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILSIK- 147 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L+++ P + R + Sbjct: 148 -----------------------------ARMNTLMAKHSGQPLEVIERDTERDRFMSAQ 178 Query: 217 EAKKVGLIDVVGG 229 EA GL+D V Sbjct: 179 EAVDYGLVDAVLT 191 >gi|315654944|ref|ZP_07907849.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] gi|315490905|gb|EFU80525.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] Length = 288 Score = 42.7 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 59/200 (29%), Gaps = 37/200 (18%) Query: 40 RIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95 + I G I + ++ + + + + + L+SPGG A I+ + Sbjct: 23 VLRINGVIAEESWLDDDITPTLFASELNAGSGPVTIWLNSPGGDVVAAARIYNMLLDYPG 82 Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 + V + +AASA +I+ A++ + + S++ K L + ++SV Sbjct: 83 K--VTVNIDGIAASAASVIAMAASTVAMSPVSMLMIHNPATLAMGDKTELSRALDMLESV 140 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT- 214 + + K L D W Sbjct: 141 ------------------------------KDSIINAYQLKTGLSRAKLSKLMDAETWMD 170 Query: 215 GAEAKKVGLIDVVGGQEEVW 234 A +G D + Sbjct: 171 ARAAIDLGFADELLNGNRAL 190 >gi|217967156|ref|YP_002352662.1| protein of unknown function DUF107 [Dictyoglomus turgidum DSM 6724] gi|217336255|gb|ACK42048.1| protein of unknown function DUF107 [Dictyoglomus turgidum DSM 6724] Length = 423 Score = 42.7 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 4/80 (5%) Query: 18 VTLTVVYFSWSSHVEDNSP-HVARIAIRGQIE-DSQELIERIERISRDDSATALIVSLSS 75 + T+++ + P +V I I+G IE +E + + +A A I + + Sbjct: 4 ILYTILFSFLLLSFLNAQPQNVYVIPIKGTIELGLASFVE--RSLKENPNAKAFIFEIDT 61 Query: 76 PGGSAYAGEAIFRAIQKVKN 95 GG A I AI N Sbjct: 62 FGGRVDAAIRIRDAILSTPN 81 >gi|190570982|ref|YP_001975340.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019499|ref|ZP_03335305.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|226706556|sp|B3CLB1|CLPP_WOLPP RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|190357254|emb|CAQ54678.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994921|gb|EEB55563.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 208 Score = 42.7 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IED+ ++ ++ + ++ + + ++SPGG AG +I+ +Q + Sbjct: 29 IIFVTGPIEDNMASVIVAQLLFLESENPDKDICMYINSPGGVVTAGLSIYDTMQYINPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + A + S + Y ++ I V Sbjct: 89 STLCIGQAASMGSLLLTAGAEGKRYSLPHSRIMIHQPSGGYHGQATDIEIHANEILRV-- 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216 ++ + K + + + Sbjct: 147 ----------------------------KKKLNQIYEKHTGNSLKKIEEMMERDKFMDPE 178 Query: 217 EAKKVGLIDVV 227 EA K GLID V Sbjct: 179 EAMKTGLIDRV 189 >gi|83858431|ref|ZP_00951953.1| ATP-dependent Clp protease, proteolytic subunit [Oceanicaulis alexandrii HTCC2633] gi|83853254|gb|EAP91106.1| ATP-dependent Clp protease, proteolytic subunit [Oceanicaulis alexandrii HTCC2633] Length = 207 Score = 42.7 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 71/191 (37%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G IED + ++ ++ + ++ + + ++SPGGS AG AI+ +Q + Sbjct: 37 IVFVTGPIEDHMASLMVAQLLFLESENPNKEIAMYINSPGGSVSAGLAIYDTMQYI--SC 94 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 PV T MAAS G L+ A + G+ F P + L + + Sbjct: 95 PVATACVGMAASMGSLLLTAGDK------------GMRFATPNARIMLHQPSGGFRG--- 139 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 ++ + + + + P +K D + Sbjct: 140 -------------TTADIERHGEDILKIKRRMNEIYVKHTGQPLEKVEKTLDRDFYMDAM 186 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 187 EAKEFGLIDHV 197 >gi|291236428|ref|XP_002738143.1| PREDICTED: caseinolytic peptidase, ATP-dependent, proteolytic subunit-like [Saccoglossus kowalevskii] Length = 231 Score = 42.7 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 58/193 (30%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D ++ ++ + + + + + ++SPGGS AG I+ +Q V Sbjct: 59 IICLMGPITDDLSSLVVAQLLFLQSESNKKPIHMYINSPGGSVTAGLGIYDTMQYVLPPI 118 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + ++ L + + + S + Q + + + + Sbjct: 119 STWCVGQACSMASLLLCAGFPGMRYSLPNSRIMVHQPSGQA---HGQATDIQIQAEEILK 175 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + L + P D + + Sbjct: 176 MK---------------------------NQINNLYVKHTKQPLDFIAAAMERDKFMNPI 208 Query: 217 EAKKVGLIDVVGG 229 EA++ GL+D V Sbjct: 209 EAEEFGLVDKVLD 221 >gi|326561827|gb|EGE12162.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella catarrhalis 7169] gi|326563259|gb|EGE13526.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella catarrhalis 46P47B1] gi|326563373|gb|EGE13638.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella catarrhalis 12P80B1] gi|326565911|gb|EGE16072.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella catarrhalis 103P14B1] gi|326568952|gb|EGE19021.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella catarrhalis BC1] gi|326569251|gb|EGE19312.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella catarrhalis BC7] gi|326571926|gb|EGE21931.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella catarrhalis BC8] gi|326575439|gb|EGE25364.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella catarrhalis 101P30B1] gi|326576473|gb|EGE26381.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella catarrhalis CO72] gi|326577944|gb|EGE27808.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella catarrhalis O35E] Length = 217 Score = 42.7 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED+ ++ ++ + D+ + + ++SPGG AG AI+ + +K Sbjct: 49 VIFLTGQVEDNMANLIVAQLLFLEADNPEKDIHLYINSPGGVVTAGMAIYDTMNFIKPHV 108 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A S V L + ++ I + Sbjct: 109 STICMGQAASMGSFLLSAGEKGKRYALANSRVMIHQPLGGFRGQASDIEIHAREIIEL-- 166 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 RL++E P +K + Sbjct: 167 ----------------------------KAKLNRLLAEHTGQPIEKLERDTDRDHFMSAE 198 Query: 217 EAKKVGLIDVVGG 229 +A+ GL+DVV Sbjct: 199 QARDYGLVDVVLD 211 >gi|254409743|ref|ZP_05023524.1| Clp protease [Microcoleus chthonoplastes PCC 7420] gi|196183740|gb|EDX78723.1| Clp protease [Microcoleus chthonoplastes PCC 7420] Length = 198 Score = 42.7 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 62/187 (33%), Gaps = 33/187 (17%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 + +I + ++I + + +D+ + + ++SPGGS AG AI+ +Q +K+ I Sbjct: 38 EVDDEITN--QIIAVMLYLDSEDNNKDIYLYINSPGGSVTAGMAIYDTMQHIKSDVVTIC 95 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + + L + +A S + ++ I + Sbjct: 96 VGLAASMGSFLLTAGKQGKRLALPHSRIMIHQPSGGVRGQATDIEIEAREILRI------ 149 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220 ++ ++ +K D + + EAK+ Sbjct: 150 ------------------------RRQLNQIYADKTGQTVEKIEKDIDRDFFMSAQEAKE 185 Query: 221 VGLIDVV 227 GLID V Sbjct: 186 YGLIDRV 192 >gi|149916365|ref|ZP_01904885.1| phosphoglycerate kinase [Roseobacter sp. AzwK-3b] gi|149809819|gb|EDM69671.1| phosphoglycerate kinase [Roseobacter sp. AzwK-3b] Length = 210 Score = 42.7 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 57/191 (29%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ A + + ++SPGG +G +I+ +Q +K + Sbjct: 38 IIFVNGPVHDGMSSLIVAQLLHLEAENPAKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + AAS G L+ A + I Sbjct: 98 STLVIGQ--AASMGSLLLTAGEKGMR-----FSLPNSRIMVHQPSGGYQGQATDIMIHAE 150 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 +K ++ + K L + Sbjct: 151 ETLK-----------------------LKKRLNQIYVKHTGQTLKKVEDALERDNFMSPE 187 Query: 217 EAKKVGLIDVV 227 EAK GLID + Sbjct: 188 EAKNWGLIDEI 198 >gi|320660346|gb|EFX27826.1| Head-tail preconnector protein GP5 (Contains: Scaffold protein GP6 (Head protein GP6)) [Escherichia coli O55:H7 str. USDA 5905] Length = 119 Score = 42.7 bits (98), Expect = 0.070, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 57/117 (48%) Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 + SPGG A I +++ +KPV ++ A SA L++ A + + +TS +GSI Sbjct: 1 MDSPGGQAAGAFDCADMIYRLRQQKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSI 60 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 GV+ + L + GV I + S K + + F + + Q MQ +D++ F Sbjct: 61 GVMMSHVSYAGHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMF 117 >gi|194366275|ref|YP_002028885.1| peptidase S14 ClpP [Stenotrophomonas maltophilia R551-3] gi|194349079|gb|ACF52202.1| peptidase S14 ClpP [Stenotrophomonas maltophilia R551-3] Length = 280 Score = 42.7 bits (98), Expect = 0.070, Method: Composition-based stats. Identities = 31/240 (12%), Positives = 76/240 (31%), Gaps = 37/240 (15%) Query: 44 RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 G ++ + + I ++V+++SPGG + G AI+ +++ + V +V Sbjct: 55 EGTGVTAKRISAALRAIGD----KDVVVNINSPGGDFFEGVAIYNLLREHQ--GRVTVQV 108 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 +AASA +I+ A + I+ + S + + + ++ ++ K Sbjct: 109 MGLAASAASVIAMAGDEILMGDGSFLMIHNAWAVAIGNRHDMADAAKLLEPFDTAMAKVY 168 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA-EAKKVG 222 + + + + D W GA +A + G Sbjct: 169 ------------------------------AARSGVTEAEAARMMDEETWIGAAQAVEDG 198 Query: 223 LIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282 D + + + + + K ++ ++ SL + Sbjct: 199 FADGLLDGAAATKDAKQPSGGRKALALVEAAMAKAGHSRSMRRDTLKSLFNGKPSAAESA 258 >gi|304389877|ref|ZP_07371836.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327053|gb|EFL94292.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 221 Score = 42.7 bits (98), Expect = 0.070, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 63/205 (30%), Gaps = 37/205 (18%) Query: 30 HVEDNSPHVARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 + ++ V + I G I + ++ I + + + + L+SPGG A Sbjct: 14 TNDLDADVVRVLRISGTIAEESWFDDDVTPSIFASELNAGSGPVTIWLNSPGGDVVAAAQ 73 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+ + + V + +AASA +I+ A++ + + S++ K L Sbjct: 74 IYNMLIDYPS--HVTVNIDGIAASAASVIAMAASTVAMSPVSMLMIHNPATMAVGDKDEL 131 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 + + SV + E + K Sbjct: 132 ARAMSMLDSV------------------------------KESILNAYQEKTGMSRAKLS 161 Query: 206 VLSDGRIWT-GAEAKKVGLIDVVGG 229 L D W A +G D + Sbjct: 162 KLMDAETWMDARAAIDMGFADELLT 186 >gi|229586800|ref|YP_002845301.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia africae ESF-5] gi|228021850|gb|ACP53558.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia africae ESF-5] Length = 216 Score = 42.7 bits (98), Expect = 0.070, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 29/187 (15%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + ++ + + ++SPGG AG AI+ +Q +K + + A S G Sbjct: 59 IVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQ--ACSMGS 116 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L+ C + I+ +K + + Sbjct: 117 LLLCGGEKGMR-----YSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSK 171 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 Q ++ + S + EAKK GL+D + + Sbjct: 172 HTEQELKHIEKSMERDN----------------------FMSPEEAKKFGLVDNILSSRD 209 Query: 233 VWQSLYA 239 L Sbjct: 210 AMALLAK 216 >gi|91789402|ref|YP_550354.1| hypothetical protein Bpro_3548 [Polaromonas sp. JS666] gi|91698627|gb|ABE45456.1| protein of unknown function DUF107 [Polaromonas sp. JS666] Length = 453 Score = 42.7 bits (98), Expect = 0.070, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 73/230 (31%), Gaps = 12/230 (5%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLS 74 ++ L ++ +S + + +P V + G I ++ + + + A +++ + Sbjct: 3 IIALLLILWSSLAVAQPAAPVV-VLTQSGAIGPANADYVQRGLAKAVEL-KAQLVVLKMD 60 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 +PGG + + I+ + + + + A+ + + Sbjct: 61 TPGGLDLS---MRTIIKDILASPVPVASFVAPEGARAASAGTYI--LYASHIAAMAPATN 115 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 L V + K K + + D++ + Sbjct: 116 LGAATPVSIGPQSEPREPGAAKGKAEKEGDRASDAPSTTQSMTRKQTSDAAAYIRGLAQL 175 Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 RN + + + + EA K+ +IDV+ +V Q L L + Sbjct: 176 RGRNADWAD-KAVREAVSLSAEEALKLNVIDVIAT--DVAQLLRQLDGRK 222 >gi|33862212|ref|NP_893773.1| Clp protease proteolytic subunit [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|67460514|sp|Q7UZK7|CLPP3_PROMP RecName: Full=ATP-dependent Clp protease proteolytic subunit 3; AltName: Full=Endopeptidase Clp 3 gi|33634430|emb|CAE20115.1| Clp protease proteolytic subunit [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 215 Score = 42.7 bits (98), Expect = 0.070, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 31/179 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 S L+ ++ + +D + + ++SPGGS AG AI+ +Q++ I + Sbjct: 62 SDSLVAQLLFLEAEDPHKDIQIYINSPGGSVTAGLAIYDTMQQISPDVVTICFGVAASMG 121 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L A +A S + L ++ Sbjct: 122 AFLLSGGAKGKRLALPNSRIMIHQPLGGAQGQAVEIE----------------------- 158 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 + + L+++ N +K ++ + + EA + GLID V Sbjct: 159 -------IQAKEILFLKKTLNSLLAKHTNQSLEKINEDTERDYFLSPEEAVEYGLIDKV 210 >gi|159039408|ref|YP_001538661.1| endopeptidase Clp [Salinispora arenicola CNS-205] gi|157918243|gb|ABV99670.1| Endopeptidase Clp [Salinispora arenicola CNS-205] Length = 213 Score = 42.7 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 57/178 (32%), Gaps = 31/178 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 + ++ ++ +D + + ++SPGGS Y+G AI+ +Q + N + MAAS G Sbjct: 53 ICAQLLLLAAEDPDRDINLWINSPGGSVYSGMAIYDTMQFIDNDVSTVA--MGMAASMGQ 110 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L+ CA + Sbjct: 111 LLLCAGTKGKR-----YALPHARIMMHQPSGGMGG-----------------------TA 142 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGG 229 + + + + + F V+ + SD R +T EA G ID V Sbjct: 143 SDIAIQAEQMLYTKRMFQERVAFHTGQSQAQIEADSDRDRWFTAQEAMDYGFIDKVIT 200 >gi|146305508|ref|YP_001185973.1| nodulation efficiency protein NfeD [Pseudomonas mendocina ymp] gi|145573709|gb|ABP83241.1| Nodulation efficiency protein NfeD [Pseudomonas mendocina ymp] Length = 481 Score = 42.7 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 15/228 (6%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSS 75 + L + S V V ++ + G I + L+ + + D+ A +++ + + Sbjct: 28 LCLCALILCASVGVSAAPGAVVQLQVDGVIGPASADYLVRGLAKAV-DEGAQLVVIEIDT 86 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 PGG A AI +AI A++ A+ + + L Sbjct: 87 PGGLDTAMRAIIKAILASPIPVASYVAPGGARAASAGTYIL-----YASHVAAMTPGTNL 141 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 V + + K E ++ + M + ++R ++ Sbjct: 142 GAATPVAIGMPGAPSQPE----GDDKGEKDKATQGDKGTGDAMTAKQVNDAAAYIRGLAN 197 Query: 196 SRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 R + + + + EA + +ID + + L L Sbjct: 198 MRGRNAEWAEQAVREAVSLSAEEALEQKVIDYLA--RDTADLLRQLDG 243 >gi|28870881|ref|NP_793500.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas syringae pv. tomato str. DC3000] gi|213968834|ref|ZP_03396975.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas syringae pv. tomato T1] gi|28854130|gb|AAO57195.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas syringae pv. tomato str. DC3000] gi|213926437|gb|EEB59991.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas syringae pv. tomato T1] Length = 216 Score = 42.7 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 59/197 (29%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 48 VIFMVGPVEDYMANLIAAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 107 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A S + L + +D I ++ Sbjct: 108 STICIGQACSMGAFLLAGGAEGKRHCLPNSRMMIHQPLGGFQGQASDIDIHAKEILHIRH 167 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L++ + + Sbjct: 168 ------------------------------RLNSLLAHHTGQSLETIERDTERDNFMSAE 197 Query: 217 EAKKVGLIDVVGGQEEV 233 A + GLID V + ++ Sbjct: 198 RAAEYGLIDSVINKRQM 214 >gi|313903081|ref|ZP_07836475.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermaerobacter subterraneus DSM 13965] gi|313466583|gb|EFR62103.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermaerobacter subterraneus DSM 13965] Length = 199 Score = 42.7 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I I+D + +I ++ + DD + + ++SPGGS +G AI+ +Q +K Sbjct: 29 IVFIGTPIDDVVANSVIAQLLFLQTDDPDRDISIYINSPGGSVDSGLAIYDTMQHIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L A S + Q Sbjct: 89 ATYCVGLAASMGAILLAGGTKGKRYALPHSRIMIHQPHSQVGG----------------- 131 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 V++ D + ++++ P ++ ++ + T Sbjct: 132 -------------TAADVKIYADQLLKLRQVANEILAKHTGQPLERIERDTERDFFMTAE 178 Query: 217 EAKKVGLIDVV 227 EAK+ G+ID V Sbjct: 179 EAKEYGIIDHV 189 >gi|167768863|ref|ZP_02440916.1| hypothetical protein ANACOL_00180 [Anaerotruncus colihominis DSM 17241] gi|167669035|gb|EDS13165.1| hypothetical protein ANACOL_00180 [Anaerotruncus colihominis DSM 17241] Length = 432 Score = 42.7 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 60/183 (32%), Gaps = 32/183 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAASAG 111 L E ++ + + ++ + ++S GG A I ++++ I V +A S G Sbjct: 78 LSEFLDDLEQIAKCKSITIRMNSYGGDAGVSNTIHNRLRELARNGAELICVVDGVAMSGG 137 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 LI CA + + +SL+ K + + N Sbjct: 138 SLIMCACDTVRVNPSSLIMI----------------------------HKCWSYIWGDYN 169 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQ 230 ++ M D D+ + + + + + TG EA G D V Sbjct: 170 ADELRQMADQNDAWDKMQITIYKRKTGLSDTVLSHMMADTTYMTGKEAVDKGFADEV--L 227 Query: 231 EEV 233 E+ Sbjct: 228 EDA 230 >gi|115380546|ref|ZP_01467508.1| protease IV [Stigmatella aurantiaca DW4/3-1] gi|115362447|gb|EAU61720.1| protease IV [Stigmatella aurantiaca DW4/3-1] Length = 95 Score = 42.7 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%) Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 + +GR+++G GL+D VG EE + ++ R Sbjct: 1 EIHARGEGRVYSGTRGLAAGLVDRVGSFEEACRYALERAGVKTER 45 >gi|114332326|ref|YP_748548.1| hypothetical protein Neut_2369 [Nitrosomonas eutropha C91] gi|114309340|gb|ABI60583.1| protein of unknown function DUF107 [Nitrosomonas eutropha C91] Length = 475 Score = 42.7 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 84/224 (37%), Gaps = 18/224 (8%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVAR-IAIRGQIEDS--QELIERIERISRDDSATA 68 ++ + +++ S+ + +A + + G I + + + R + A Sbjct: 16 LLLAIFLWAGMLFAQPSNTATGAANGIAVWLDVNGAISPAMYDYIHRGLSRAAE-QQAQI 74 Query: 69 LIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 +I+ + +PGG + I I + AASAG I AS+I A + Sbjct: 75 VILQMDTPGGLDVSMRKIIQEIIASPIPVASFVAPSGARAASAGTYILYASHIAAMAPAT 134 Query: 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV-NPKAVQMMQDVVDSSY 186 +G+ + K+G + +K+ K E + + + M V + Sbjct: 135 NLGAATPV-----------KIGAQSQEIKAPGHKPENERTNPIGSSGTQDAMTMKVINDA 183 Query: 187 HWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGG 229 ++R ++ R+ D + +G T AEA +ID++ Sbjct: 184 AAYIRGLARMRDRNADWAEQAVREGVSLTSAEALDNNVIDLIAD 227 >gi|320094139|ref|ZP_08025952.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp. oral taxon 178 str. F0338] gi|319978941|gb|EFW10471.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp. oral taxon 178 str. F0338] Length = 214 Score = 42.7 bits (98), Expect = 0.073, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 68/187 (36%), Gaps = 30/187 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D + + + ++SPGGS A AI+ +Q +K + + + Sbjct: 56 ASADDVMAQLLVLESQDPDSLITMYINSPGGSFTALTAIYDTMQYIKPQIQTVCLGQAAS 115 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + + +A + V + + Sbjct: 116 AAAVLLAAGSPGKRLALPNARVLIHQPAMEGMQGQA------------------------ 151 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226 +Q++ D +D W ++E P ++ + +I T +A + GLID Sbjct: 152 -----SDIQIVADEIDRMRAWLEDTLAEHSGTPVEQVRRDIERDKILTAPQAAEYGLIDQ 206 Query: 227 VGGQEEV 233 V + Sbjct: 207 VLESRKA 213 >gi|17231317|ref|NP_487865.1| hypothetical protein alr3825 [Nostoc sp. PCC 7120] gi|17132959|dbj|BAB75524.1| alr3825 [Nostoc sp. PCC 7120] Length = 297 Score = 42.7 bits (98), Expect = 0.073, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 71/183 (38%), Gaps = 14/183 (7%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 IEDS++++ I D ++ +PGG A E I RA+ + + V V Sbjct: 68 TIEDSEQILRAIRLTPPDVPIDLIL---HTPGGLVLATEQIARALIRHSAK--VTVFVPH 122 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 A S G +++ A++ IV +++G + L + + + Sbjct: 123 YAMSGGTMLALAADEIVMDANAVLGPVDPQLGNFPAASILKVVKDKP----IGEIDDQTL 178 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-----WTGAEAKK 220 +++ KA+Q +Q V + + + L+ GR+ T EA + Sbjct: 179 IMADLAGKAIQQVQRFVRTLLKDNIPKQKVNPENIESIIEALTTGRVTHDYPITVEEATE 238 Query: 221 VGL 223 +GL Sbjct: 239 MGL 241 >gi|15669689|ref|NP_248502.1| hypothetical protein MJ_1495 [Methanocaldococcus jannaschii DSM 2661] gi|2496184|sp|Q58890|Y1495_METJA RecName: Full=Uncharacterized protein MJ1495 gi|1592131|gb|AAB99506.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 292 Score = 42.7 bits (98), Expect = 0.073, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 5/151 (3%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 IEDS+E++ I D +I +PGG A A E I A+++ K + VI + Sbjct: 81 TIEDSEEILRAIRLTPEDMPIDLII---HTPGGLALASEQIALALKEHKAKTTVIIPHYA 137 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 M+ G LI+ A++ I+ + +++G + L+ + V + Sbjct: 138 MSG--GSLIALAADEIIMDKNAVMGPVDPQIGQYPAASILEAYYRKGEKVSDETLILVDI 195 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + + + + D + +++ Sbjct: 196 SKKAIKQMEEFVYELLKDKYGDEKAKEIAKK 226 >gi|300715591|ref|YP_003740394.1| ATP-dependent Clp protease proteolytic subunit [Erwinia billingiae Eb661] gi|299061427|emb|CAX58539.1| ATP-dependent Clp protease proteolytic subunit [Erwinia billingiae Eb661] Length = 215 Score = 42.3 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 62/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ ++ +K Sbjct: 50 IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMKFIKPDV 109 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Y ++ Sbjct: 110 STICMGQACSMGAFLLTAGTKGKRYALPNSRVMIHQPLGGYQGQATDIEIHARE------ 163 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++E ++ R + + Sbjct: 164 ------------------------ILKVKARMNELMAEHTGKTLEEIERDTERDRFLSAS 199 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D V Sbjct: 200 EAVEYGLVDSVLT 212 >gi|78780133|ref|YP_398245.1| ATP-dependent Clp protease proteolytic subunit ClpP [Prochlorococcus marinus str. MIT 9312] gi|115311352|sp|Q317Y6|CLPP4_PROM9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 4; AltName: Full=Endopeptidase Clp 4 gi|78713632|gb|ABB50809.1| ATP-dependent Clp protease proteolytic subunit ClpP [Prochlorococcus marinus str. MIT 9312] Length = 219 Score = 42.3 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 60/179 (33%), Gaps = 31/179 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 S L+ ++ + +D + + ++SPGGS AG AI+ +Q++ I + Sbjct: 68 SDSLVAQLLFLEAEDPEKDIQIYINSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMG 127 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L A +A S + L ++ Sbjct: 128 AFLLSGGAKGKRLALPNSRIMIHQPLGGAQGQAVEIE----------------------- 164 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 + + L++E P +K ++ + + +EA + GLID V Sbjct: 165 -------IQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEAVEYGLIDKV 216 >gi|145628436|ref|ZP_01784237.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae 22.1-21] gi|145633845|ref|ZP_01789567.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae 3655] gi|145637965|ref|ZP_01793604.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae PittHH] gi|145639474|ref|ZP_01795079.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae PittII] gi|148826642|ref|YP_001291395.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae PittEE] gi|148827882|ref|YP_001292635.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae PittGG] gi|229845547|ref|ZP_04465675.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae 6P18H1] gi|229847178|ref|ZP_04467282.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae 7P49H1] gi|260583375|ref|ZP_05851146.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus influenzae NT127] gi|319775445|ref|YP_004137933.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae F3047] gi|166201826|sp|A5UE11|CLPP_HAEIE RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|166201827|sp|A5UHJ6|CLPP_HAEIG RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|144980211|gb|EDJ89870.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae 22.1-21] gi|144985287|gb|EDJ92126.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae 3655] gi|145268831|gb|EDK08795.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae PittHH] gi|145271521|gb|EDK11433.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae PittII] gi|148716802|gb|ABQ99012.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae PittEE] gi|148719124|gb|ABR00252.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae PittGG] gi|229809854|gb|EEP45576.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae 7P49H1] gi|229811563|gb|EEP47264.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae 6P18H1] gi|260093580|gb|EEW77497.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus influenzae NT127] gi|309751687|gb|ADO81671.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haemophilus influenzae R2866] gi|309973789|gb|ADO96990.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haemophilus influenzae R2846] gi|317450036|emb|CBY86250.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae F3047] Length = 193 Score = 42.3 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 VIFLSGEVEDRMANLIVAQLLFLESEDPTKDINIYINSPGGSVTAGMAIYDTMQFIKPDI 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A + V L + Sbjct: 89 RTLCIGQACSMGAFLLAGGTAGKRAALPNARVMIHQPLGGFRGQ---------------- 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +Q+ + H ++ ++ +D + + Sbjct: 133 --------------ASDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDTDRDNFMSAE 178 Query: 217 EAKKVGLIDVV 227 EA+ GL+D V Sbjct: 179 EAQAYGLVDEV 189 >gi|320164411|gb|EFW41310.1| ATP-dependent Clp protease proteolytic subunit [Capsaspora owczarzaki ATCC 30864] Length = 257 Score = 42.3 bits (97), Expect = 0.075, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 64/197 (32%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+DS ++ ++ + D+ + + ++SPGG AG AI+ +Q V++ Sbjct: 87 IICLMGPIDDSTASVIVGQLLFLEGDNPLKPIHMYINSPGGVVTAGMAIYDTMQYVQSPV 146 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A + V L Sbjct: 147 STICMGQAASMGSLILAAGAKGQRFILPHARVMIHQPLGGAQGQ---------------- 190 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + R+ E P + ++ + Sbjct: 191 --------------ASDIAIQAREILKMREMLNRIYVEHTGQPLKRIEDATERDYFMNPE 236 Query: 217 EAKKVGLIDVVGGQEEV 233 EAK+ G+ID V + ++ Sbjct: 237 EAKEFGIIDQVIQKRDI 253 >gi|255323211|ref|ZP_05364346.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter showae RM3277] gi|255299734|gb|EET79016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter showae RM3277] Length = 196 Score = 42.3 bits (97), Expect = 0.075, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+IED + ++ ++ + +D + + ++SPGG +G +I+ + +K Sbjct: 30 IIMLSGEIEDGMASAIVAQMLFLEAEDPDKDIYLYINSPGGVITSGFSIYDTMNYIKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A A S + L ++ Sbjct: 90 CTICIGQAASMGAFLLSCGAQGKRYALPNSRIMIHQPLGGARGQATDIE----------- 138 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +++++ K +D + + A Sbjct: 139 -------------------IQAKEILRMKEILNAILAKNTGQKLAKIQKDTDRDFFMSSA 179 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 180 EAKEYGLIDKV 190 >gi|238919011|ref|YP_002932525.1| ATP-dependent Clp protease, proteolytic subunit ClpP, [Edwardsiella ictaluri 93-146] gi|259585951|sp|C5BCJ6|CLPP_EDWI9 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|238868579|gb|ACR68290.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative [Edwardsiella ictaluri 93-146] Length = 206 Score = 42.3 bits (97), Expect = 0.075, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 41 IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDV 100 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A S V L + ++ I S+K Sbjct: 101 STICMGQACSMGSFLLAAGAQGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILSIK- 159 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L+++ P + R + Sbjct: 160 -----------------------------ARMNTLMAKHSGQPIEVIERDTERDRFMSAQ 190 Query: 217 EAKKVGLIDVVGG 229 +A + GL+D V Sbjct: 191 DAVEYGLVDAVLT 203 >gi|223040072|ref|ZP_03610353.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter rectus RM3267] gi|222878658|gb|EEF13758.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter rectus RM3267] Length = 196 Score = 42.3 bits (97), Expect = 0.075, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+IED + ++ ++ + +D + + ++SPGG +G +I+ + +K Sbjct: 30 IIMLSGEIEDGIASAIVAQMLFLEAEDPDKDIYLYINSPGGVITSGFSIYDTMNYIKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A A S + L ++ Sbjct: 90 CTICIGQAASMGAFLLSCGAQGKRYALPNSRIMIHQPLGGARGQATDIE----------- 138 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +++++ K +D + + A Sbjct: 139 -------------------IQAKEILRMKEILNAILAKNTGQKLAKIQKDTDRDFFMSSA 179 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 180 EAKEYGLIDKV 190 >gi|114563762|ref|YP_751275.1| ATP-dependent Clp protease proteolytic subunit [Shewanella frigidimarina NCIMB 400] gi|122299288|sp|Q07ZX8|CLPP_SHEFN RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|114335055|gb|ABI72437.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella frigidimarina NCIMB 400] Length = 203 Score = 42.3 bits (97), Expect = 0.076, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 53/180 (29%), Gaps = 31/180 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + + + + ++SPGGS AG AI+ +Q +K + + A Sbjct: 53 IVAQLLFLESESPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCMGQAASMGAFL 112 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L A S V L + + I + Sbjct: 113 LAGGAKGKRHCLPNSRVMIHQPLGGFQGQASDIAIHAKEILGI----------------- 155 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231 + ++++E P D + +A + G++D + Sbjct: 156 -------------KNKLNQMLAEHTGQPLDIIERDTDRDNFMSATQAVEYGIVDSLLTSR 202 >gi|78485521|ref|YP_391446.1| ATP-dependent Clp protease proteolytic subunit [Thiomicrospira crunogena XCL-2] gi|110816468|sp|Q31GF1|CLPP_THICR RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|78363807|gb|ABB41772.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thiomicrospira crunogena XCL-2] Length = 200 Score = 42.3 bits (97), Expect = 0.076, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG AI+ ++ +K Sbjct: 36 VIFLVGQVEDHMANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGMAIYDTMRFIKPDV 95 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + A A S V L + ++ I +K Sbjct: 96 STMCIGQAASMGSFLLSAGAEGKRYALPNSRVMIHQPLGGFQGQASDIEIHAKEIIQIKQ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 KA ++ P + + Sbjct: 156 KLNKAL------------------------------ADHTGQPIEVIENDTDRDNFMSAD 185 Query: 217 EAKKVGLIDVVGGQE 231 EA GL+D V + Sbjct: 186 EACDYGLVDKVLTRR 200 >gi|326519674|dbj|BAK00210.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 256 Score = 42.3 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 57/191 (29%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ A + + ++SPGG AG AI+ +Q +++ Sbjct: 57 IVCIHGPIADDTASLVVAQLLFLESENPAKPIHLYINSPGGVVTAGLAIYDTMQYIRSPV 116 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + A A + V Sbjct: 117 TTLCIGQAASMGSLLLAAGAPGERRALPNARVMIHQPSGGASGQ---------------- 160 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + ++ ++ D+ + Sbjct: 161 --------------ASDIAIQAKEILKVRDRLNKIYAKHTGQAIDRIEQCMERDMFMDPV 206 Query: 217 EAKKVGLIDVV 227 EA GLID V Sbjct: 207 EAHAWGLIDEV 217 >gi|167750809|ref|ZP_02422936.1| hypothetical protein EUBSIR_01791 [Eubacterium siraeum DSM 15702] gi|167656244|gb|EDS00374.1| hypothetical protein EUBSIR_01791 [Eubacterium siraeum DSM 15702] gi|291530696|emb|CBK96281.1| ATP-dependent Clp protease proteolytic subunit ClpP [Eubacterium siraeum 70/3] gi|291557795|emb|CBL34912.1| ATP-dependent Clp protease proteolytic subunit ClpP [Eubacterium siraeum V10Sc8a] Length = 195 Score = 42.3 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 56/176 (31%), Gaps = 29/176 (16%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + D + + ++SPGGS AG AI+ + +K I + A Sbjct: 44 VVAQLLFLEGQDPDKDISLYINSPGGSISAGMAIYDTMNYIKCDVSTICVGMAASMGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L S A S V+ P + L I K Sbjct: 104 LSSGAKGKRFCLPNS-----EVMIHQPLISGGLSGQQTDITIHAKYLEK----------- 147 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVV 227 + ++++E+ Y++ + + EA GL+D V Sbjct: 148 ------------TRETLEKIMAENCGKSYEQLHKDCERDNFLSAEEACAYGLVDKV 191 >gi|288920827|ref|ZP_06415125.1| Endopeptidase Clp [Frankia sp. EUN1f] gi|288347786|gb|EFC82065.1| Endopeptidase Clp [Frankia sp. EUN1f] Length = 255 Score = 42.3 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 61/186 (32%), Gaps = 33/186 (17%) Query: 43 IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102 + I ++ + ++ ++ +D + + ++SPGGS AG AI+ +Q V+N ++ Sbjct: 88 VEDSIANA--ICAQLLLLNAEDPQRDIFLYINSPGGSVSAGMAIYDTMQYVENDVATVSL 145 Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 + L + A + + + Sbjct: 146 GLAASMGQFLLCAGAPGKRYSLPHARIMMHQPSGGIGG---------------------- 183 Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKV 221 + + + + + ++ P ++ SD R +T EAK Sbjct: 184 --------TASDIAIQAEQMLYTKRMMQERIAFHTGQPVEQIERDSDRDRWFTADEAKDY 235 Query: 222 GLIDVV 227 G +D V Sbjct: 236 GFVDHV 241 >gi|229176194|ref|ZP_04303685.1| Peptidase S14 ClpP [Bacillus cereus MM3] gi|228607289|gb|EEK64620.1| Peptidase S14 ClpP [Bacillus cereus MM3] Length = 241 Score = 42.3 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 81/243 (33%), Gaps = 49/243 (20%) Query: 41 IAIRGQIEDS---QEL-IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 I + G I +S + + I+R + + + ++S GGS + G +I+ +++ ++ Sbjct: 24 IYVYGTIGESWWEESVSANAIKRKLSNVKDGDIHLYINSFGGSVFDGISIYNQLKRHSSK 83 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 VI V +AASA LI+ A + I+ S++ + Sbjct: 84 --VIVHVDGIAASAASLIAMAGDEIIMPANSMLMVH------------------RASTFA 123 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216 + + ++ + + + +L + T Sbjct: 124 WGNREVFEQQLNALDKIDQSVTNTYMKRFV-----------GERSEMEELLKNETWLTAE 172 Query: 217 EAKKVGLIDVVGGQEE--------------VWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 E K GL D + + E + Q A ++ ++++ PK Sbjct: 173 ECKAFGLCDEIADETEEPNEQSSPEDVKNNLLQKYTARAEQKTPKQVEGVEEPKKPITNM 232 Query: 263 LKN 265 + N Sbjct: 233 MMN 235 >gi|320161999|ref|YP_004175224.1| hypothetical protein ANT_25980 [Anaerolinea thermophila UNI-1] gi|319995853|dbj|BAJ64624.1| hypothetical membrane protein [Anaerolinea thermophila UNI-1] Length = 447 Score = 42.3 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 42/251 (16%), Positives = 84/251 (33%), Gaps = 36/251 (14%) Query: 1 MEFVLKKIKT-RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS-QELIERIE 58 +E V+ ++ R V+L L + + + + P V + + G + QE ++R Sbjct: 3 VEDVMGRLNWVRLVVLGLFLWAWLGTASPMQAQSDVPVVVTVRLEGALNPIWQETLKRAM 62 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL--ISC 116 R++ D A ALI+ L +PGG + + I+ V A++ Sbjct: 63 RVAEDRGAEALILQLDTPGGQIDVMNRLVQQIRNSPMPVVVYVSPAGAMAASAGAMLTLA 122 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 +A ETS+ + V Q + ++ + Sbjct: 123 GHASAMAPETSIGAASPVGGQGEDIGETME------------------------SKVKEI 158 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQ 235 + + V ++ + R + EA + GL+DV+ + + Sbjct: 159 LKASARGLTLRRGETAV-------RLAEEMIENARAVSANEAVENGLVDVIASDLPTLLR 211 Query: 236 SLYALGVDQSI 246 L L V+ Sbjct: 212 KLDGLSVEFGD 222 >gi|297279075|ref|XP_001109489.2| PREDICTED: calcium-activated chloride channel regulator 4-like [Macaca mulatta] Length = 931 Score = 42.3 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 30/265 (11%), Positives = 71/265 (26%), Gaps = 21/265 (7%) Query: 46 QIEDSQELIERIER-----------ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I S++ I + + L++ S + +A + Sbjct: 275 VISSSEDFNNTIPMVTPPPPPVFSLLKINQRIVCLVLDKSGSMAGYDRLNQMNKAAKYFL 334 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYPYVKPFLDKLGVSIK 153 + M I + + + L + + + Sbjct: 335 LQIVENGSWVGMVHFDSTATIINKPIQIISSDERNTLLAWLPTYASGGTSICSGIKSAFQ 394 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW--FVRLVSESRNIPYDKTL--VLSD 209 + + S + +D V ++ ++ Sbjct: 395 VIGELSSHLDGSEVVLLTDGEDYTASSCIDEVKRSGAIVHFIALGTAADKAVIEMSKITG 454 Query: 210 GRIWTGAE-AKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 GR + ++ A+ GLID G L + + + N W D + Sbjct: 455 GRHFYASDKAQNNGLIDAFGDLTSGNTELSQKSLQLESKGLI---LNSNPWMNDTVIID- 510 Query: 269 SSLLEDTIPLMKQTKVQGLWAVWNP 293 S++ +DT L+ ++ ++W+P Sbjct: 511 STVGKDTFFLITWNRLPPSISLWDP 535 >gi|282898110|ref|ZP_06306105.1| Peptidase S14, ClpP [Raphidiopsis brookii D9] gi|281197254|gb|EFA72155.1| Peptidase S14, ClpP [Raphidiopsis brookii D9] Length = 236 Score = 42.3 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 68/191 (35%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + ++ ++ + +D + + ++SPGGS YAG AI+ IQ+++ Sbjct: 59 IIFLGTAIDDNVANSIVAQLLFLDAEDPEKDVQLYINSPGGSVYAGMAIYDTIQQIRPDV 118 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + + ++ S + L ++ I + Sbjct: 119 VTICFGLAASMGAFLLTAGTAGKRMSLPDSRIMIHQPLGGAQGQAIDIEIQAREILYI-- 176 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +L+S+ P ++ ++ + + Sbjct: 177 ----------------------------KANLNQLMSKHTGQPLERIEADTERDFFMSPQ 208 Query: 217 EAKKVGLIDVV 227 EAK GLID V Sbjct: 209 EAKDYGLIDQV 219 >gi|251790648|ref|YP_003005369.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dickeya zeae Ech1591] gi|247539269|gb|ACT07890.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dickeya zeae Ech1591] Length = 207 Score = 42.3 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + S V L + ++ Sbjct: 102 STICMGQAASMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L+++ P + R + A Sbjct: 156 ------------------------ILKVKARMNELMAKHTGQPLEMIERDTERDRFLSAA 191 Query: 217 EAKKVGLIDVVGGQEE 232 EA GL+D V E Sbjct: 192 EAVDYGLVDSVLTHRE 207 >gi|83943111|ref|ZP_00955571.1| Protease subunit of ATP-dependent Clp protease [Sulfitobacter sp. EE-36] gi|83846119|gb|EAP83996.1| Protease subunit of ATP-dependent Clp protease [Sulfitobacter sp. EE-36] Length = 211 Score = 42.3 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 58/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + + ++SPGG +G +I+ +Q +K + Sbjct: 30 IIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + S V Y Sbjct: 90 STLVIGQAASMGSLLLQAGEKGMRFSLPNSRVMVHQPSGGYQGQ---------------- 133 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + + + P +K L + Sbjct: 134 --------------ATDIMIHAQETQKLKTRLNEIYVKHTGQPLEKVEAALERDNFMSPE 179 Query: 217 EAKKVGLIDVV 227 EAK GLID + Sbjct: 180 EAKDWGLIDEI 190 >gi|271964885|ref|YP_003339081.1| endopeptidase Clp [Streptosporangium roseum DSM 43021] gi|270508060|gb|ACZ86338.1| Endopeptidase Clp [Streptosporangium roseum DSM 43021] Length = 192 Score = 42.3 bits (97), Expect = 0.079, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 32/174 (18%) Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 E + + DD + + + ++SPGGS AG AI+ +Q + N + + L Sbjct: 39 ELLLLSAGDDR-SDIWLYINSPGGSVSAGMAIYDVMQYIPNDVATVGMGLAGSMGQFLLC 97 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + A A + + Sbjct: 98 AGAPGKRYALPHARIMMHQPSGGVGG------------------------------TASD 127 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVV 227 + + + + + ++ P ++ D R +T EAK GL+D V Sbjct: 128 IVIQAEQMLYTKQMMSERIAFHTGQPLEQIEEDWDRDRWFTATEAKDYGLVDEV 181 >gi|260913095|ref|ZP_05919577.1| ATP-dependent Clp protease [Pasteurella dagmatis ATCC 43325] gi|260632682|gb|EEX50851.1| ATP-dependent Clp protease [Pasteurella dagmatis ATCC 43325] Length = 193 Score = 42.3 bits (97), Expect = 0.079, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 VIFLSGEVEDRMANLIVAQLLFLESEDPEKDINIYINSPGGSVTAGMAIYDTMQFIKPDI 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + +A + V L + Sbjct: 89 RTLCVGQACSMGAFLLAGGTAGKRIALPNARVMIHQPLGGFRGQ---------------- 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 +Q+ + ++ ++ + Sbjct: 133 --------------ASDIQIHAQEILKIKQTLNERLAFHTGQSIERIERDTDRDNFMSAE 178 Query: 217 EAKKVGLIDVV 227 EAK GL+D V Sbjct: 179 EAKAYGLVDEV 189 >gi|163751869|ref|ZP_02159083.1| ATP-dependent Clp protease proteolytic subunit [Shewanella benthica KT99] gi|161328219|gb|EDP99383.1| ATP-dependent Clp protease proteolytic subunit [Shewanella benthica KT99] Length = 203 Score = 42.3 bits (97), Expect = 0.079, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +E+ + ++ ++ + + + + ++SPGGS AG AI+ +Q +K Sbjct: 38 IIFLVGPVEEHMANLVVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPDV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A+ S V L + + + + + Sbjct: 98 STVCIGQAASMGAFLLAGGAAGKRHCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILG 154 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 K +E + + A Sbjct: 155 IKDKLNQML---------------------------AEHTGQSLEVIERDTDRDNFMSAA 187 Query: 217 EAKKVGLIDVVGG 229 +A + GLID V Sbjct: 188 QAAEYGLIDSVMS 200 >gi|319955770|ref|YP_004167033.1| ATP-dependent clp protease proteolytic subunit clpp [Nitratifractor salsuginis DSM 16511] gi|319418174|gb|ADV45284.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitratifractor salsuginis DSM 16511] Length = 196 Score = 42.3 bits (97), Expect = 0.079, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 55/193 (28%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D+ ++ ++ + D + ++SPGG +G +I+ + +K Sbjct: 29 IIMLSGEVNDAVASSIVAQLLFLEAQDPDKDIYFYINSPGGVITSGFSIYDTMNYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A A +S + L Sbjct: 89 STICIGQAASMGAFLLACGAEGKRYALPSSRIMIHQPLG--------------------- 127 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + +E K ++ + + Sbjct: 128 GAQGQATDIAIQAKEILRMKTYLNKIL---------AEKTGKSVKKIEKDTERDYFMSAE 178 Query: 217 EAKKVGLIDVVGG 229 EA++ GLID V Sbjct: 179 EAQEYGLIDKVLT 191 >gi|242399808|ref|YP_002995233.1| hypothetical protein TSIB_1833 [Thermococcus sibiricus MM 739] gi|242266202|gb|ACS90884.1| hypothetical protein TSIB_1833 [Thermococcus sibiricus MM 739] Length = 248 Score = 42.3 bits (97), Expect = 0.079, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 69/178 (38%), Gaps = 11/178 (6%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+E++ I +D +I +PGG A I +A++ + VI + M Sbjct: 41 IEDSEEILRAIRMAPKDKPIDLII---HTPGGLVLAATQIAKALKDHPAKTRVIIPHYAM 97 Query: 107 AASAGYLISCASNIIVAAETSLVGSIG-VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 + G LI+ A++ I+ +++G + L QYP SI V+ + Sbjct: 98 SG--GTLIALAADEIIMDPHAVLGPVDPQLGQYPAPSIIKAVEQKSIDKVEDQTLILADV 155 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 +N + + D + +++ + T A+++GL Sbjct: 156 AKKAINQVRDFVYHLLKDKYGEEKAKQLAQ-----VLTEGRWTHDYPITVEHARELGL 208 >gi|212640342|ref|YP_002316862.1| ATP-dependent Clp protease proteolytic subunit [Anoxybacillus flavithermus WK1] gi|226706440|sp|B7GL34|CLPP_ANOFW RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|212561822|gb|ACJ34877.1| ATP-dependent Clp protease proteolytic subunit (class III heat-shock protein) [Anoxybacillus flavithermus WK1] Length = 196 Score = 42.3 bits (97), Expect = 0.079, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 65/196 (33%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + ++ ++ ++ +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IIILGSPIDDHVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGMAIYDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A S + L ++ Sbjct: 89 STICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGVQGQATEIEIAAKR------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + R++SE+ P + T Sbjct: 143 ------------------------ILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAE 178 Query: 217 EAKKVGLIDVVGGQEE 232 +AK+ GLID V + + Sbjct: 179 KAKEYGLIDRVLTRVD 194 >gi|84494298|ref|ZP_00993417.1| ATP-dependent Clp protease proteolytic subunit [Janibacter sp. HTCC2649] gi|84383791|gb|EAP99671.1| ATP-dependent Clp protease proteolytic subunit [Janibacter sp. HTCC2649] Length = 219 Score = 42.3 bits (97), Expect = 0.079, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 68/190 (35%), Gaps = 28/190 (14%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++I ++ + D +++ ++SPGGS A AI+ +Q ++ + Sbjct: 58 ASADDVIAQLIVLESQDPDRDILMYINSPGGSFTAMTAIYDTMQYIRPDVQTFVIGQAAS 117 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + A A + V + + M ++ Sbjct: 118 AAAVLLGAGAPGKRYALPNARVLIHQPAIE------------------GTGGMASDLEIQ 159 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 + + ++D + S V LV + + +I + A+AK+ GLID V Sbjct: 160 ANEVLRMRGWLEDTIASHSGRDVELVRK----------DIERDKILSAAQAKEYGLIDEV 209 Query: 228 GGQEEVWQSL 237 + + Sbjct: 210 LASRKATNEV 219 >gi|127513436|ref|YP_001094633.1| ATP-dependent Clp protease proteolytic subunit [Shewanella loihica PV-4] gi|171855248|sp|A3QFX6|CLPP_SHELP RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|126638731|gb|ABO24374.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella loihica PV-4] Length = 203 Score = 42.3 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 31/178 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + + + + ++SPGGS AG AI+ +Q +K + + A Sbjct: 53 IVAQLLFLESESPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFL 112 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L A S V L + + + + + K Sbjct: 113 LAGGAKGKRHCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILGIKNKLNQML------ 163 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229 ++ P + + EA + GL+D V Sbjct: 164 ---------------------ADHTGQPLEVIERDTDRDNFMSATEAAEYGLVDSVLD 200 >gi|295105645|emb|CBL03189.1| ATP-dependent Clp protease proteolytic subunit ClpP [Faecalibacterium prausnitzii SL3/3] Length = 198 Score = 42.3 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 54/176 (30%), Gaps = 26/176 (14%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + D + + ++SPGGS AG AI +Q +K I + A Sbjct: 44 VVAQLLYLEGQDPDKDISLYINSPGGSISAGMAIHDTMQYIKCDVSTICMGMAASMGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L S A + + L + I Sbjct: 104 LASGTKGKRFALPNAEIMIHQPLIGGQGGGLSGQTTDIKIH------------------- 144 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227 + + R++SE P +K T +AK+ GLID V Sbjct: 145 ------AEHMVYIRDKMNRMLSEYTGQPLEKIQQDTERDNYLTAQQAKEYGLIDEV 194 >gi|269138347|ref|YP_003295047.1| protease subunit of ATP-dependent Clp protease [Edwardsiella tarda EIB202] gi|267984007|gb|ACY83836.1| protease subunit of ATP-dependent Clp protease [Edwardsiella tarda EIB202] gi|304558379|gb|ADM41043.1| ATP-dependent Clp protease proteolytic subunit [Edwardsiella tarda FL6-60] Length = 189 Score = 42.3 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 24 IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDV 83 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A S V L + ++ I S+K Sbjct: 84 STICMGQACSMGSFLLAAGAQGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILSIK- 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L+++ P + R + Sbjct: 143 -----------------------------ARMNTLMAKHSGQPIEVIERDTERDRFMSAQ 173 Query: 217 EAKKVGLIDVVGG 229 +A + GL+D V Sbjct: 174 DAVEYGLVDAVLT 186 >gi|145642383|ref|ZP_01797943.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae R3021] gi|145272926|gb|EDK12812.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae 22.4-21] Length = 193 Score = 42.3 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED ++ ++ + +D + + ++SPGGS AG AI+ +Q +K+ Sbjct: 29 VIFLSGEVEDRMANLIVAQLLFLESEDPTKDINIYINSPGGSVTAGMAIYDTMQFIKSDI 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A + V L + Sbjct: 89 RTLCIGQACSMGAFLLAGGTAGKRAALPNARVMIHQPLGGFRGQ---------------- 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +Q+ + H ++ ++ +D + + Sbjct: 133 --------------ASDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDTDRDNFMSAE 178 Query: 217 EAKKVGLIDVV 227 EA+ GL+D V Sbjct: 179 EAQAYGLVDEV 189 >gi|49475380|ref|YP_033421.1| ATP-dependent Clp protease proteolytic subunit [Bartonella henselae str. Houston-1] gi|67460276|sp|Q6G3Z3|CLPP_BARHE RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|49238186|emb|CAF27396.1| ATP-dependent clp protease proteolytic subunit [Bartonella henselae str. Houston-1] Length = 210 Score = 42.3 bits (97), Expect = 0.082, Method: Composition-based stats. Identities = 27/210 (12%), Positives = 60/210 (28%), Gaps = 39/210 (18%) Query: 40 RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G +ED ++ ++ + ++ + + ++SPGG +G AI+ +Q ++ Sbjct: 37 IIFINGPVEDGMAMLVCAQLLFLEAENPKKEISLYINSPGGVVTSGMAIYDTMQFIRPPV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + A + + Sbjct: 97 STLCMGQAASMGSLLLTAGAKGHRFTLPNARIMVHQPSG--------------------- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + YD L T Sbjct: 136 -------GFQGQASDIERHA--QDIIKMKQRLNEIYVQHTGQNYDVIERTLDRDHFMTAE 186 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 EAK+ GL+D +V Q ++ Sbjct: 187 EAKQFGLVD------DVIQYRAETEKEEKD 210 >gi|300114147|ref|YP_003760722.1| hypothetical protein Nwat_1495 [Nitrosococcus watsonii C-113] gi|299540084|gb|ADJ28401.1| protein of unknown function DUF107 [Nitrosococcus watsonii C-113] Length = 465 Score = 42.3 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 70/229 (30%), Gaps = 17/229 (7%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 FV +++ SLV L + + ++ + + +RG I + + I+R Sbjct: 6 FVFTSKWYFWILGSLVCLFLGGAVPAQQNQNLAGTALLLDVRGVIGPATS--DYIQRTMA 63 Query: 63 DDSATA---LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119 + +I+ + +PGG A I + + A++ ++ Sbjct: 64 KSNTEGAALIILRMDTPGGLDTAMREIIQDVLASPVPVVGYVAPSGARAASAGTYIMYAS 123 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 I A + P + + ++ + +N Sbjct: 124 HIAAMAPATNLGAATPVHLPMGSQPPGEATPPGEGEEAGTPPKDTLARKAINDAVAY--- 180 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 V RN + + + + + EA ++ +ID++ Sbjct: 181 --------IKGLAVQRGRNERWAE-KAVREAASLSAQEALEMEVIDLIA 220 >gi|330448246|ref|ZP_08311894.1| nfeD-like family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492437|dbj|GAA06391.1| nfeD-like family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 473 Score = 42.3 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 36/281 (12%), Positives = 83/281 (29%), Gaps = 30/281 (10%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATAL 69 + + + ++ FS V V I I+G I S + I + +A + Sbjct: 4 VIRFLFMCVMLLGFSA---VAQTQQEVWVIGIKGGIGPATSDYVTREISEAQNN-NAAMI 59 Query: 70 IVSLSSPGGSAYAGEAIFRAI----------------QKVKNRKPVITEVHEMAASAGYL 113 I+ + +PGG + I +AI + ++ H + G Sbjct: 60 ILQVDTPGGLDTSMRQIIQAITVSPVPIATWVGPAGSRAASAGTYILLASHIATMADGTN 119 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 + A+ + + + + + + S + + Sbjct: 120 LGAATPVSIGGGKAGSNPLSGSDEDKPTNTSDNPQNKQSNSEEKQNSAENDKEPTAETNS 179 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEE 232 + M V++ + + L P + + A K +ID + +E+ Sbjct: 180 SSAMESKVINDAAAYIESLAKLHNRNPEWAIKAVREAASIDAQTALKENVIDFIAQNREQ 239 Query: 233 VWQSL----YALGVDQ---SIRKIKDWNPPKNYWFCDLKNL 266 V + L + + + +++ F L L Sbjct: 240 VIEKANGRMVKLNGVETPIELTNVSFIEREQDWRFKLLSVL 280 >gi|291550775|emb|CBL27037.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus torques L2-14] Length = 193 Score = 42.3 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 56/181 (30%), Gaps = 31/181 (17%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++ ++ + DD + + ++SPGGS AG AI+ +Q +K + + Sbjct: 39 VSASVIVAQLLFLEADDPDKDIQLYINSPGGSVTAGLAIYDTMQYIKCDVSTVCIGMAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L A + + + ++ ++ + + + K Sbjct: 99 MGAFLLSGGKKGKRFALPNAEIMIHQPSG---GAQGQATEIQIAAEHILRTKKKLNEIL- 154 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226 + + P + + EAK+ GLID Sbjct: 155 --------------------------AANTGKPLEVIQQDTERDNFMSAEEAKEYGLIDE 188 Query: 227 V 227 V Sbjct: 189 V 189 >gi|227510637|ref|ZP_03940686.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513652|ref|ZP_03943701.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus buchneri ATCC 11577] gi|227524797|ref|ZP_03954846.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus hilgardii ATCC 8290] gi|227083168|gb|EEI18480.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus buchneri ATCC 11577] gi|227088053|gb|EEI23365.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus hilgardii ATCC 8290] gi|227190289|gb|EEI70356.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 214 Score = 42.3 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 59/193 (30%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IED +I ++ + DS + + ++SPGG +G AIF + VK Sbjct: 46 IIMLSGPIEDDMANAIIAQLLFLDAQDSEKDIYLYINSPGGVITSGMAIFDTMNFVKADV 105 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ S A A + V + ++ Sbjct: 106 QTIVMGMAASMASVLASSGAKGKRFALPHAQVLIHQPSGGAQGQQTEIEIAAEE------ 159 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + L++++ P +K T Sbjct: 160 ------------------------ILKARKMINELLAKNSGQPIEKINKDTERDNYLTAQ 195 Query: 217 EAKKVGLIDVVGG 229 EA GL+D + Sbjct: 196 EAVDYGLLDGIMT 208 >gi|225175063|ref|ZP_03729059.1| protein of unknown function DUF107 [Dethiobacter alkaliphilus AHT 1] gi|225169239|gb|EEG78037.1| protein of unknown function DUF107 [Dethiobacter alkaliphilus AHT 1] Length = 437 Score = 42.3 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 3/124 (2%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISRD 63 +K +ML L T ++ V V I I G +E +ER R + + Sbjct: 1 MKNRTVALIMLLLFTGMSIFTVQPPAVSAEQETVYVIPIGGAVEQGLHRYLERSFREAEE 60 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 A A+I+ +++PGG+ A I I PV V A SAG I+ +++ + Sbjct: 61 AGAQAIILEINTPGGAVDAATQIRDLI--YGADMPVYAYVRWSAISAGAYIALSADALYM 118 Query: 124 AETS 127 A S Sbjct: 119 APGS 122 >gi|148652118|ref|YP_001279211.1| ATP-dependent Clp protease proteolytic subunit [Psychrobacter sp. PRwf-1] gi|148571202|gb|ABQ93261.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Psychrobacter sp. PRwf-1] Length = 240 Score = 42.3 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED+ ++ ++ + ++ + + ++SPGGS AG A+F + +K Sbjct: 71 VIFLTGQVEDNMANLIVAQMLFLEAENPEKDIHLYINSPGGSVSAGLAMFDTMNFIKPDV 130 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A S V ++ I + Sbjct: 131 STICMGGAYSMGSFLLAAGQKGKRYALANSRVMIHQPSGGAQGQATDIEINAREILKI-- 188 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 R+++E P +K + W Sbjct: 189 ----------------------------RDRLNRILAERTGQPLEKIERDVERDYWLDAQ 220 Query: 217 EAKKVGLIDVV 227 EAK GL+D V Sbjct: 221 EAKAYGLVDEV 231 >gi|302835159|ref|XP_002949141.1| hypothetical protein VOLCADRAFT_120717 [Volvox carteri f. nagariensis] gi|300265443|gb|EFJ49634.1| hypothetical protein VOLCADRAFT_120717 [Volvox carteri f. nagariensis] Length = 288 Score = 42.3 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 62/192 (32%), Gaps = 9/192 (4%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D + +++ + + D + + ++SPGG Y+ + AIQ +K Sbjct: 91 IIFVGGYINDKMATQIVGSLLALEAIDENEDIRLYINSPGGQPYSVLGVVDAIQSIKPDV 150 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + S+ L S A + + + + + K + ++ Sbjct: 151 QTVALGACYSYSSLLLASGTKGKRYAMKNTRIMMTQPMGGSQGDIYQIKKTVEELNAIYQ 210 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-- 215 + Q + ++ + D D + Sbjct: 211 IFSRYYMRFTGMSQDAVEQATCRDYFMTPEQ-----AKMEGLIDDIIRGKGDYTVPPALV 265 Query: 216 AEAKKVGLIDVV 227 + ++VGL+D + Sbjct: 266 KQFREVGLVDDL 277 >gi|253996690|ref|YP_003048754.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylotenera mobilis JLW8] gi|253983369|gb|ACT48227.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylotenera mobilis JLW8] Length = 214 Score = 42.3 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 23/199 (11%), Positives = 60/199 (30%), Gaps = 34/199 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 46 VIFLVGPVNDMSANLVVAQLLFLEAENPDKDISLYINSPGGSVTAGMSIYDTMQFIKPDV 105 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A + + S + + ++ Sbjct: 106 STLCIGQAASMGAFLLAAGAKDKRYSLPNSRIMIHQPSGGFQGQSSDIEIHAKE------ 159 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + +++ ++ + Sbjct: 160 ------------------------ILYLRAKLNDILAHHTGRTAEEIDRDTERDNFMSAE 195 Query: 217 EAKKVGLIDV-VGGQEEVW 234 ++ GLID +G + E Sbjct: 196 QSVAYGLIDKVIGSRNEAV 214 >gi|113953920|ref|YP_730624.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. CC9311] gi|113881271|gb|ABI46229.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus sp. CC9311] Length = 196 Score = 42.3 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 57/182 (31%), Gaps = 31/182 (17%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + ++ ++ + +D + + ++SPGGS Y G IF +Q +K + + Sbjct: 38 SANRIVAQLLFLEAEDPEKEIFLYVNSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASM 97 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 A L + A + + S + L + + + Sbjct: 98 GAFLLCAGAKGKRSSLQHSRIMIHQPLG---GASGQASDIRIQADEILFLK--------- 145 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 +++ P DK +D + + +A + GLID V Sbjct: 146 ------------------DRLNHELADRTGQPLDKIQADTDRDFFMSPQQAMEYGLIDNV 187 Query: 228 GG 229 Sbjct: 188 ID 189 >gi|121593621|ref|YP_985517.1| ATP-dependent Clp protease proteolytic subunit [Acidovorax sp. JS42] gi|166201795|sp|A1W5B6|CLPP_ACISJ RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|120605701|gb|ABM41441.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acidovorax sp. JS42] Length = 202 Score = 42.3 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 66/191 (34%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D ++ ++ + ++ + ++SPGGS AG AI+ +Q +K Sbjct: 37 VIFLVGEVNDQTANLVVAQLLFLESENPDKDISFYINSPGGSVTAGMAIYDTMQFIKPDV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A + S + VL ++ Sbjct: 97 STLCCGFAASMGAFLLAAGAKGKRYSLPNSKIMIHQVLGGARGQATDIE----------- 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + R+++E P +K ++ + T Sbjct: 146 -------------------IHARDILRTKEQMNRILAERTGQPIEKVKADTERDYFMTAD 186 Query: 217 EAKKVGLIDVV 227 EAK G++D V Sbjct: 187 EAKDYGIVDQV 197 >gi|294501296|ref|YP_003564996.1| hypothetical protein BMQ_4558 [Bacillus megaterium QM B1551] gi|294351233|gb|ADE71562.1| putative membrane protein [Bacillus megaterium QM B1551] Length = 443 Score = 42.3 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 67/233 (28%), Gaps = 30/233 (12%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDS 65 +KT + + + L F S + HV I + +E+ L IE +D Sbjct: 1 MKTLFSFVCFLILATGLFPTISTADVKRVHV--IPVNKTVENGLLSFLNRSIEDA-ENDG 57 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 A +I+ + +PGG+ A I +++ S + + + Sbjct: 58 ADLIILDIDTPGGAVDAASEIAKSL-----------------TSTPIPTAAFVDKKALSA 100 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 + + + + + + + Sbjct: 101 GAYIALNADQIYMTPGSTMGSAAVIDQHGNAAGKKAQSYWLSAMKSAAEQNNRNPKYAEA 160 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV-VGGQEEVWQSL 237 ++ + L ++ T +A++VG + V +++ L Sbjct: 161 MANTKMVI-------PELNLKGNELLTLTPKQAEQVGYSEGTVKNLDDLLSVL 206 >gi|227328849|ref|ZP_03832873.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 207 Score = 42.3 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 IIFLTGQVEDYMANLVVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A + S V L + ++ Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L+++ P + R + + Sbjct: 156 ------------------------ILKVKAKMNELMAKHTGQPLEAIERDTERDRFLSAS 191 Query: 217 EAKKVGLIDVV 227 EA GL+D V Sbjct: 192 EAVDYGLVDSV 202 >gi|33600679|ref|NP_888239.1| phage-related Clp protease [Bordetella bronchiseptica RB50] gi|33568279|emb|CAE32191.1| phage-related Clp protease [Bordetella bronchiseptica RB50] Length = 291 Score = 42.3 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 55/228 (24%), Gaps = 22/228 (9%) Query: 58 ERISRDDSATAL----IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 DD+ + ++ G + I A++ + + L Sbjct: 35 RAAVEDDAERTISVYDVIGYDWWTGEGVTAKRIASALRSMGAGPVTVNVNSPGGDMFEGL 94 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 E ++ + DK ++ ++ N Sbjct: 95 AIYNLLREHQGEVTVKVLGLAASAASIIAMAGDKRQIARAGFLM---VHNCWVNAQGNRH 151 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-AEAKKVGLIDVVGGQEE 232 ++ D ++ + S + DG W G ++A + G D + ++ Sbjct: 152 DLREFADTMEPFDAAMADIYVASSGQDLGEVQRQMDGETWIGGSQAIEQGYADELLPSDQ 211 Query: 233 V--------------WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 V +S + + K+ + Sbjct: 212 VGKGTSGTSASAVRRIESAMRAAGLPRSEAQRLISEFKSSLSDSAGSG 259 >gi|317455555|pdb|3Q7H|A Chain A, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii gi|317455556|pdb|3Q7H|B Chain B, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii gi|317455557|pdb|3Q7H|C Chain C, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii gi|317455558|pdb|3Q7H|D Chain D, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii gi|317455559|pdb|3Q7H|E Chain E, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii gi|317455560|pdb|3Q7H|F Chain F, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii gi|317455561|pdb|3Q7H|G Chain G, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii gi|317455562|pdb|3Q7H|H Chain H, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii gi|317455563|pdb|3Q7H|I Chain I, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii gi|317455564|pdb|3Q7H|J Chain J, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii gi|317455565|pdb|3Q7H|K Chain K, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii gi|317455566|pdb|3Q7H|L Chain L, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii gi|317455567|pdb|3Q7H|M Chain M, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii gi|317455568|pdb|3Q7H|N Chain N, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii Length = 195 Score = 42.3 bits (97), Expect = 0.087, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 35/192 (18%) Query: 40 RIAIRGQIEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 I + GQ+ED + + + S + + + + ++SPGG+ + AI+ Q VK Sbjct: 30 VIFLVGQVEDHXANLAIAQXLFLESENPN-KDINLYINSPGGAVTSAXAIYDTXQFVKPD 88 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 + +A A L A S V VL Y + + V Sbjct: 89 VRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVXIHQVLGGYQGQGTDIQIHAKQTQRVS 148 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215 +++++ ++ ++ + T Sbjct: 149 ------------------------------DQLNQILAKHTGKDIERVEKDTNRDYFLTP 178 Query: 216 AEAKKVGLIDVV 227 EA + GLID + Sbjct: 179 EEAVEYGLIDSI 190 >gi|302869360|ref|YP_003837997.1| endopeptidase Clp [Micromonospora aurantiaca ATCC 27029] gi|315504165|ref|YP_004083052.1| endopeptidase clp [Micromonospora sp. L5] gi|302572219|gb|ADL48421.1| Endopeptidase Clp [Micromonospora aurantiaca ATCC 27029] gi|315410784|gb|ADU08901.1| Endopeptidase Clp [Micromonospora sp. L5] Length = 213 Score = 42.3 bits (97), Expect = 0.087, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 57/176 (32%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 + ++ ++ +D + + ++SPGGS Y+G AI+ +Q + N + MAAS G Sbjct: 53 ICAQLLLLAAEDPDRDIFLWINSPGGSVYSGMAIYDTMQYIDNDVSTVA--MGMAASMGQ 110 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L+ CA L Sbjct: 111 LLLCAGTKGKR-----YALPHARIMMHQPSGGLGG-----------------------TA 142 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVV 227 + + + + + F V+ + SD R +T EA G ID V Sbjct: 143 SDIAIQAEQMLYTKRMFQERVAFHTGQSQAQIEADSDRDRWFTAQEAMDYGFIDKV 198 >gi|296109420|ref|YP_003616369.1| protein of unknown function DUF114 [Methanocaldococcus infernus ME] gi|295434234|gb|ADG13405.1| protein of unknown function DUF114 [Methanocaldococcus infernus ME] Length = 271 Score = 42.3 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 70/181 (38%), Gaps = 12/181 (6%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+E++ I +D +I +PGG A I RA++ VI + M Sbjct: 68 IEDSEEILRAIRSAPKDKPIDLII---HTPGGLVLAASQIARALKNHPAETRVIVPHYAM 124 Query: 107 AASAGYLISCASNIIVAAETSLVGSIG-VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 + G LI+ A++ I+ + +++G + L QYP ++V+ + Sbjct: 125 SG--GTLIALAADKIIMDKNAVLGPVDPQLGQYPAPSIVKAVEEKGKENVEDKTLILADV 182 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL-I 224 + + + D + +++ + T EA K+GL + Sbjct: 183 AKKAIKQVENFVYWLLKDKYGEEKAKELAK-----ILTEGRWTHDYPITVDEAIKLGLKV 237 Query: 225 D 225 D Sbjct: 238 D 238 >gi|318041532|ref|ZP_07973488.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. CB0101] Length = 196 Score = 42.3 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 61/188 (32%), Gaps = 31/188 (16%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + ++ ++ + +D + + ++SPGGS Y G IF +Q +K + +AA Sbjct: 38 SANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHIKPDVHTVCVG--LAA 95 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 S G + CA + + + + + + + K Sbjct: 96 SMGAFLLCAGAKGKRSSLTHSRI-MIHQPLGGARGQASDIRIQADEILYLKKKLNQEL-- 152 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 ++ P + +D + + AEA + GLID V Sbjct: 153 -------------------------ADRTGQPLSRIEEDTDRDFFMSPAEAAEYGLIDKV 187 Query: 228 GGQEEVWQ 235 + V Sbjct: 188 IDKRPVRA 195 >gi|303239032|ref|ZP_07325562.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acetivibrio cellulolyticus CD2] gi|302593370|gb|EFL63088.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acetivibrio cellulolyticus CD2] Length = 194 Score = 42.3 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 60/177 (33%), Gaps = 31/177 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGGS AG AI+ +Q VK I + A Sbjct: 44 VVAQMLFLEAEDPDKDIQLYINSPGGSVSAGFAIYDTMQYVKPDVSTICIGMAASMGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A A S + L + Sbjct: 104 LNAGAKGKRFALPNSEIMIHQPLGGTRGQATEIK-------------------------- 137 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228 + + + + R++SE P +K ++ + + EAK GL+D V Sbjct: 138 ----IHAEHILKTRDRLNRILSEKTGQPLEKIEADTERDFFMSAEEAKAYGLVDDVM 190 >gi|292491118|ref|YP_003526557.1| peptidase S14 ClpP [Nitrosococcus halophilus Nc4] gi|291579713|gb|ADE14170.1| peptidase S14 ClpP [Nitrosococcus halophilus Nc4] Length = 785 Score = 42.3 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 64/208 (30%), Gaps = 38/208 (18%) Query: 39 ARIAIRGQIED-SQELIERIERISRDDSATA--LIVSLSSPGGSAYAGEAIFRAIQKVKN 95 A I I G I +E I+ + S A + ++S GGS Y G AI A+ + Sbjct: 36 AEIYIYGDIGGWDEESIDARRFVQDLASLEARLITARINSIGGSVYDGLAIHNALVRHPA 95 Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 + + S+ I + + + + + ++ Sbjct: 96 QVTTTID--------------------GIAASIASLIAMAGEERTMASNALLMVHAPWTL 135 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR---I 212 + ++ +E+ + L L Sbjct: 136 AIGNSEEFRRMADMLDK------------HSEAMTAAYAEATGQSAEDILALLTDGEDHY 183 Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 +T EA+ +G + VG ++ V + L A+ Sbjct: 184 YTAEEAQALGFVHSVGSEQPVPEDLTAM 211 >gi|148245175|ref|YP_001219868.1| ClpP-like phage protease [Clostridium kluyveri DSM 555] gi|219684075|ref|YP_002470457.1| hypothetical protein CKR_P47 [Clostridium kluyveri NBRC 12016] gi|146337055|gb|ABQ23666.1| predicted ClpP-like phage protease [Clostridium kluyveri DSM 555] gi|219570583|dbj|BAH08566.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 255 Score = 42.3 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 69/207 (33%), Gaps = 37/207 (17%) Query: 26 SWSSHVEDNSPHVARIAIRGQIE-----DSQELIERIERISRD-DSATALIVSLSSPGGS 79 W + + A I I G+I D+ ++ D + + ++SPGG+ Sbjct: 7 FWQMKMSADDDKQADIFIYGEIVSYKWDDTDTTAASFKKDLDDLGDVNTINLHINSPGGN 66 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + G AI +++ K + V +AAS +I+ + N I+ + S++ L Sbjct: 67 VFEGVAIGNMLKQHKAQVN--VYVDALAASIASIIAMSGNTILMPKNSMMMIHNPL---- 120 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 S+ K +++ + M L + Sbjct: 121 --------------SIAWGNAKDFRKKADDLDKIGLSM----------QTTYLNKAGDKL 156 Query: 200 PYDKTLVLSDGRIW-TGAEAKKVGLID 225 D L D W + +A GL D Sbjct: 157 DQDTLQKLMDNDTWLSADDAYSYGLCD 183 >gi|313884960|ref|ZP_07818712.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Eremococcus coleocola ACS-139-V-Col8] gi|312619651|gb|EFR31088.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Eremococcus coleocola ACS-139-V-Col8] Length = 200 Score = 42.3 bits (97), Expect = 0.089, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 64/205 (31%), Gaps = 36/205 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D+ +I ++ + D + + ++SPGGS AG A++ +Q + Sbjct: 29 IIMLSGEVNDAMANSVIAQLLFLDAQDPDKDIYLYINSPGGSVTAGMAMYDTMQFINADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A + V L ++ Sbjct: 89 QTIVIGMAASMGSVLLAAGTKGKRWALPNAEVMIHQPLGGAQGQATEIEIAAK------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +++S++ + +D + T Sbjct: 142 -----------------------HILLTRDRLNKILSDATGQDLEVIQKDTDRDNFMTAQ 178 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALG 241 +A GLID + E + L Sbjct: 179 QALDYGLIDGIM---ENAKKLKEKK 200 >gi|326800870|ref|YP_004318689.1| peptidase S14 ClpP [Sphingobacterium sp. 21] gi|326551634|gb|ADZ80019.1| peptidase S14 ClpP [Sphingobacterium sp. 21] Length = 373 Score = 42.3 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 60/201 (29%), Gaps = 17/201 (8%) Query: 27 WSSHVEDNSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGS 79 + V + S V RI I G I D + + + + ++SPGGS Sbjct: 5 FFQVVSNKSDQVGRINIYGFIGDYWEKANTATNFEREFRALEE--KHDRIDIYINSPGGS 62 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV----L 135 + G IF I+ + + L+S + A + S+ + V Sbjct: 63 VWEGLPIFNTIRSSQKEIHTYVNGIAFSMGFMLLLSAKNGRRHAFKGSIGMAHNVSTYDY 122 Query: 136 FQYPYVKPFLDKLGVSIKS----VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 ++ D+L + K SE + + Sbjct: 123 GNAKQLRKSADELDKYDDVLSALIAECSGKTVEQVKSEWLNYEDHFFTPDEMKAEGFVNH 182 Query: 192 LVSESRNIPYDKTLVLSDGRI 212 + + + + LS G+I Sbjct: 183 IEDDEASDMPENVQNLSFGQI 203 >gi|319784104|ref|YP_004143580.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169992|gb|ADV13530.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 209 Score = 42.3 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 60/199 (30%), Gaps = 33/199 (16%) Query: 40 RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G +ED + ++ + ++ + + ++SPGG +G AI+ +Q +K Sbjct: 37 IIFITGPVEDGMATLVCAQLLFLEAENPKKEINLYINSPGGVVTSGMAIYDTMQFIKPAV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + ++ A + + Sbjct: 97 STLCIGQAASMGSLLLTAGHKDMRFATPNARIMVHQPSG--------------------- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + + Y++ L T Sbjct: 136 -------GFQGQASDIERHALD--IIKLKRRLNEVYVKHTGKSYEEIEKTLDRDHFMTAD 186 Query: 217 EAKKVGLIDVVGGQEEVWQ 235 EAK GLID V E + Sbjct: 187 EAKDFGLIDKVISSREAAE 205 >gi|295112117|emb|CBL28867.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synergistetes bacterium SGP1] Length = 195 Score = 42.3 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 57/179 (31%), Gaps = 31/179 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + ++ ++ + +D + + ++SPGGS AG AI+ +Q +K+ I + + Sbjct: 43 ANSIVAQLLFLESEDPDKDIHLYINSPGGSVTAGMAIYDTMQYIKSPVSTICVGMAASMA 102 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L A +A + V L ++ + Sbjct: 103 AILLSGGARGKRLALPNAEVMIHQPLGGTSGQASDIEIHARN------------------ 144 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227 + ++ +++ +K T EA GLID + Sbjct: 145 ------------ILNTRKRMNAILARHTGQDVEKVAQDTDRDNFMTAQEALDYGLIDRI 191 >gi|222055723|ref|YP_002538085.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp. FRC-32] gi|254763790|sp|B9M0Y1|CLPP_GEOSF RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|221565012|gb|ACM20984.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp. FRC-32] Length = 199 Score = 42.3 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 66/197 (33%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D+ +I ++ + +D + + ++SPGG AG AI+ ++ +K Sbjct: 28 IIFLGGAIDDTVSNLVIAQLLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMRYIKAPV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + S + L + + + + + Sbjct: 88 STICVGQAASMGAFLLSGGEKGKRFSLANSRIMIHQPLG---GFQGQATDIHIHAQEILR 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 K L++E +K ++ + +G Sbjct: 145 MKKK---------------------------LNELLAEHSGQTVEKIEADTERDYFMSGE 177 Query: 217 EAKKVGLIDVVGGQEEV 233 +AK G+ID + + + Sbjct: 178 DAKTYGIIDSIITRNTI 194 >gi|167465665|ref|ZP_02330754.1| serine protease (phage related-protein, ClpP family) [Paenibacillus larvae subsp. larvae BRL-230010] Length = 238 Score = 42.3 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 68/239 (28%), Gaps = 41/239 (17%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + E ++R+ + + + ++SPGGS + G AI +++ K V V +A Sbjct: 27 TSATSFKEDLDRLGD---LSTINLYINSPGGSVFEGIAIHNMLKRHKAN--VHVHVDALA 81 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 AS +I+ A + I + S++ + Sbjct: 82 ASIASVIAMAGDTIYMPKNSMLMIHN----------------------------PWIFAW 113 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDV 226 + + V L + +K + D W + EA + GL D Sbjct: 114 GNASEMRKIADDLDRIGNSSKQVYLQKAGDKLSDEKLQDMLDAETWLSADEAFEYGLCD- 172 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 V Q + S I + K + + K Sbjct: 173 ------VVQEANTMAASISDEFINRYKNVPKQLISQQKTPISVGDMAKRQQIADGAKEN 225 >gi|157828616|ref|YP_001494858.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia rickettsii str. 'Sheila Smith'] gi|166214706|sp|A8GSH5|CLPP_RICRS RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|157801097|gb|ABV76350.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia rickettsii str. 'Sheila Smith'] Length = 201 Score = 42.3 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 29/187 (15%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + ++ + + ++SPGG AG AI+ +Q +K + + A S G Sbjct: 44 IVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQ--ACSMGS 101 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L+ C + I+ +K + + Sbjct: 102 LLLCGGEKGMR-----YSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSK 156 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 Q +Q + S + EAKK GL+D + + Sbjct: 157 HTEQELQHIEKSMERDN----------------------FMSPEEAKKFGLVDNIISSRD 194 Query: 233 VWQSLYA 239 V L Sbjct: 195 VMALLAK 201 >gi|157962502|ref|YP_001502536.1| ATP-dependent Clp protease proteolytic subunit [Shewanella pealeana ATCC 700345] gi|189082466|sp|A8H614|CLPP_SHEPA RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|157847502|gb|ABV88001.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella pealeana ATCC 700345] Length = 203 Score = 42.3 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 51/176 (28%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + + + + ++SPGGS AG AI+ +Q +K + + A Sbjct: 53 IVAQLLFLESESPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFL 112 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L A S V L + + + + + K Sbjct: 113 LAGGAEGKRHCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILGIKNKLNTML------ 163 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227 +E P + + EA + GL+D V Sbjct: 164 ---------------------AEHTGQPLEVIERDTDRDNFMSATEAAEYGLVDSV 198 >gi|213160794|ref|ZP_03346504.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 155 Score = 42.3 bits (97), Expect = 0.092, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 52/178 (29%), Gaps = 31/178 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + ++ + + ++SPGG AG +I+ +Q +K I + A Sbjct: 5 IVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFL 64 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A S V L Y ++ Sbjct: 65 LTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE--------------------- 103 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229 + L++ ++ R + EA + GL+D + Sbjct: 104 ---------ILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILT 152 >gi|70699877|gb|AAZ06846.1| ClpP2 [Microbacterium arborescens] Length = 208 Score = 42.3 bits (97), Expect = 0.092, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 60/185 (32%), Gaps = 29/185 (15%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D +I+ ++SPGGS A AI+ +Q V + + + Sbjct: 43 ASADDVMAQLLVLESQDPDRDIIMYINSPGGSFTAMTAIYDTMQYVSPQIQTVVLGQAAS 102 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A++ L + A +A + + D + + + Sbjct: 103 AASVLLAAGAPGKRLALPNARILIHQPAVGEAGHGQASDIEIQAAEIL------------ 150 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226 W ++ N ++ + +I + EA + G++D Sbjct: 151 ----------------RMRTWLEETMARHTNRTQEQVNKDIDRDKILSAHEAMEYGIVDQ 194 Query: 227 VGGQE 231 V Sbjct: 195 VLTSR 199 >gi|227113465|ref|ZP_03827121.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|253687443|ref|YP_003016633.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754021|gb|ACT12097.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 207 Score = 42.3 bits (97), Expect = 0.093, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 IIFLTGQVEDHMANLVVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A + S V L + ++ Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L+++ P + R + + Sbjct: 156 ------------------------ILKVKAKMNELMAKHTGQPLEAIERDTERDRFLSAS 191 Query: 217 EAKKVGLIDVV 227 EA GL+D V Sbjct: 192 EAVDYGLVDSV 202 >gi|323484460|ref|ZP_08089826.1| ATP-dependent Clp protease proteolytic subunit [Clostridium symbiosum WAL-14163] gi|323692476|ref|ZP_08106710.1| ATP-dependent Clp protease proteolytic subunit [Clostridium symbiosum WAL-14673] gi|323402238|gb|EGA94570.1| ATP-dependent Clp protease proteolytic subunit [Clostridium symbiosum WAL-14163] gi|323503473|gb|EGB19301.1| ATP-dependent Clp protease proteolytic subunit [Clostridium symbiosum WAL-14673] Length = 193 Score = 42.3 bits (97), Expect = 0.094, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 54/176 (30%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGGS AG AI+ + +K I + A Sbjct: 44 IVSQLLFLESEDPNKDIHLYINSPGGSVSAGLAIYDTMNYIKCDVSTICFGMAASMGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L A A + V + ++ + + + + K Sbjct: 104 LAGGAKGKRFALPNAEVMIHQPSG---GAQGQATEIQIVAEKILQTKKKLNEIL------ 154 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227 + + PY+ T EA + GLID V Sbjct: 155 ---------------------AANTGQPYEVIERDTDRDNYMTAQEAMEYGLIDRV 189 >gi|18977905|ref|NP_579262.1| nodulation protein nfeD [Pyrococcus furiosus DSM 3638] gi|18893669|gb|AAL81657.1| nodulation protein nfeD [Pyrococcus furiosus DSM 3638] Length = 447 Score = 42.3 bits (97), Expect = 0.094, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 94/286 (32%), Gaps = 43/286 (15%) Query: 14 MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIV 71 + ++T+ + +S V I GQI + I R+ +A A+I+ Sbjct: 6 AIMILTIFTLLLFAQGVKGRDSNVVYVAQITGQITSYTFDQFDRYISIAERN-NARAIII 64 Query: 72 SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV--HEMAASAGYLISCASNIIVAAETSLV 129 L +PGG A I + IQ+ K + A++ Y+ A I +A TS+ Sbjct: 65 ELDTPGGRGDAMMEIIQRIQQAKVPVIIYVYPPGASAASAGTYIALGAHLIAMAPGTSIG 124 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 +L + + Sbjct: 125 ACRPILGYSQNGSIVEAPPKIVNHYIAYIK------------------------------ 154 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSL----YALGVDQ 244 RN + +++ T EA K G+I+V+ +++ + + V+ Sbjct: 155 SLAEESGRNATIAE-KFITEDLSLTPEEALKYGVIEVIARDVDDLLEKANGMTTKIPVNG 213 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 K+ N Y LK+ I+ + + I + T G+WA+ Sbjct: 214 RYIKLNFTNVEVRYLEPSLKDKLITYITDPNISYILLTL--GIWAL 257 >gi|134300401|ref|YP_001113897.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum reducens MI-1] gi|172044337|sp|A4J7L9|CLPP_DESRM RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|134053101|gb|ABO51072.1| ATP-dependent Clp protease proteolytic subunit ClpP [Desulfotomaculum reducens MI-1] Length = 195 Score = 42.3 bits (97), Expect = 0.094, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 58/192 (30%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G I+D + +I + + +D + + ++SPGG AG AI+ +Q +K Sbjct: 30 IIFIGGPIDDHIANLVIAQFLFLEAEDPEKDIHLYINSPGGVVTAGLAIYDTMQYIKPAV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + + L +D Sbjct: 90 STICLGQAASMGSFLLAAGAPGKRYALPMARIMIHQPLGGVQGQATDIDIHAKE------ 143 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + ++ P ++ + Sbjct: 144 ------------------------ILRMKDLLNDRLAHHTGQPLEQITRDTERDYFMSAE 179 Query: 217 EAKKVGLIDVVG 228 EAKK GLID V Sbjct: 180 EAKKYGLIDEVM 191 >gi|290474663|ref|YP_003467543.1| clpA-clpP ATP-dependent serine protease proteolytic subunit [Xenorhabdus bovienii SS-2004] gi|289173976|emb|CBJ80763.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [Xenorhabdus bovienii SS-2004] Length = 207 Score = 42.3 bits (97), Expect = 0.094, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 IIFLTGPVEDHMANLIVAQMLFLEAENPEKDINLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + ++ Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAQE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216 + L+++ P +K R + A Sbjct: 156 ------------------------ILKVKARMNELMAKHTGKPLEKIVEDTERDRFLSAA 191 Query: 217 EAKKVGLIDVV 227 E+ + GL+D + Sbjct: 192 ESVEYGLVDSI 202 >gi|256369536|ref|YP_003107046.1| ATP-dependent Clp protease proteolytic subunit [Brucella microti CCM 4915] gi|255999698|gb|ACU48097.1| ATP-dependent Clp protease proteolytic subunit [Brucella microti CCM 4915] Length = 209 Score = 42.3 bits (97), Expect = 0.094, Method: Composition-based stats. Identities = 26/199 (13%), Positives = 60/199 (30%), Gaps = 31/199 (15%) Query: 40 RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED ++ ++ + ++ + + ++SPGG +G AI+ +Q ++ Sbjct: 37 IIFVNGPVEDGMSMLVCAQLLFLEAENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPPV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + A+ A + + Sbjct: 97 STLCMGQAASMGSLLLTAGATGHRYALPNARIMVHQPSG--------------------- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + + + + R+ + L T E Sbjct: 136 -------GFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIE-CTLDRDHFMTAQE 187 Query: 218 AKKVGLIDVVGGQEEVWQS 236 A + GLID V +V Sbjct: 188 ALEFGLIDKVVEARDVSAD 206 >gi|261494048|ref|ZP_05990551.1| S14 family endopeptidase ClpP [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496191|ref|ZP_05992597.1| S14 family endopeptidase ClpP [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308143|gb|EEY09440.1| S14 family endopeptidase ClpP [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310214|gb|EEY11414.1| S14 family endopeptidase ClpP [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 197 Score = 42.3 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 61/199 (30%), Gaps = 33/199 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED+ ++ ++ + +D + + ++SPGG AG AI+ + +K Sbjct: 29 IIFLNGQVEDNMANLIVAQLLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMNFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A A + + L Sbjct: 89 ATLCTGQAASMGAFLLSAGAKGKRFALPHARIMIHQPLGGARGQ---------------- 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 +Q+ + + ++E Y+K + Sbjct: 133 --------------ATDIQIQAEEILRLKATLTHRMAEHSGQSYEKVLADTERDNFMSAE 178 Query: 217 EAKKVGLIDVVGGQEEVWQ 235 EA + GLID V Sbjct: 179 EAAEYGLIDKVLTSRSEVA 197 >gi|260889843|ref|ZP_05901106.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia hofstadii F0254] gi|260860449|gb|EEX74949.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia hofstadii F0254] Length = 208 Score = 42.3 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED + ++ ++ + D+ +++ ++SPGG AG AI+ ++ +K+ Sbjct: 47 IIFVSGEVEDGMANAIVAQLLFLDAQDNEKDIVMYINSPGGVITAGLAIYDTMRHIKSDV 106 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A + S + L Sbjct: 107 STVCVGQAASMGAVLLAAGAKGKRYSLPNSRIMIHQPLG--------------------- 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + +++SE+ ++ + Sbjct: 146 GARGQATDIQIQAKEIERM---------KEITSKILSEATGKSVEEIYADTERDNFMSPE 196 Query: 217 EAKKVGLIDVV 227 EA GLID + Sbjct: 197 EAVNYGLIDKI 207 >gi|167624686|ref|YP_001674980.1| ATP-dependent Clp protease proteolytic subunit [Shewanella halifaxensis HAW-EB4] gi|189082465|sp|B0TLU9|CLPP_SHEHH RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|167354708|gb|ABZ77321.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella halifaxensis HAW-EB4] Length = 203 Score = 41.9 bits (96), Expect = 0.096, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 51/176 (28%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + + + + ++SPGGS AG AI+ +Q +K + + A Sbjct: 53 IVAQLLFLESESPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFL 112 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L A S V L + + + + + K Sbjct: 113 LAGGAEGKRHCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILGIKNKLNTML------ 163 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227 +E P + + EA + GL+D V Sbjct: 164 ---------------------AEHTGQPLEVIERDTDRDNFMSATEAAEYGLVDSV 198 >gi|332290449|ref|YP_004421301.1| ATP-dependent Clp protease proteolytic subunit [Gallibacterium anatis UMN179] gi|330433345|gb|AEC18404.1| ATP-dependent Clp protease proteolytic subunit [Gallibacterium anatis UMN179] Length = 654 Score = 41.9 bits (96), Expect = 0.097, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 72/220 (32%), Gaps = 40/220 (18%) Query: 30 HVEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 ++ ++ A + I +I +Q+ ++ I + + + + SPGG + G A Sbjct: 6 SIKASANQSAEVFIYDEIGFWGVSAQQFANELKEIG---NVRQINLHIHSPGGDVFDGIA 62 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+ ++ K + +AAS +I+ A + ++ E +++ Sbjct: 63 IYNLLKNHPANKT--VYIDGLAASMASVIAMAGDEVIMPENAMLMIH------------- 107 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 ++ + ++ ++ + D+ Sbjct: 108 -----KPWGIQGGDAEELRKYADLLDKVESTLLMAYI------------AKTGKSEDELA 150 Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 + W TG E ++G D + S+ + ++ Sbjct: 151 AMLAVETWLTGKECVELGFADKLAEPLVAMASIQSKKIED 190 >gi|223938520|ref|ZP_03630412.1| Endopeptidase Clp [bacterium Ellin514] gi|223892782|gb|EEF59251.1| Endopeptidase Clp [bacterium Ellin514] Length = 215 Score = 41.9 bits (96), Expect = 0.097, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 60/195 (30%), Gaps = 31/195 (15%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 +I ++ + D + + ++SPGGS AG AI+ +Q + + A Sbjct: 51 IIAQLLFLQMSDPKKDIHLYINSPGGSVTAGLAIYDTMQFLTCDVNTYCIGQAASMGAVL 110 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L A + + VL Sbjct: 111 LCGGTKGKRYALPNANIMIHQVLGGAEGQ------------------------------A 140 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQE 231 V++ + ++S+ P ++ D + T EAK GL+D V Sbjct: 141 SDVEIRVKYMLRLKQRLNGIISKHTGKPIEQVEKDCDRDNFMTSDEAKAYGLVDEVVQSR 200 Query: 232 EVWQSLYALGVDQSI 246 + +L A VD+ Sbjct: 201 KEIHTLVAGQVDKKD 215 >gi|260821306|ref|XP_002605974.1| hypothetical protein BRAFLDRAFT_92198 [Branchiostoma floridae] gi|229291311|gb|EEN61984.1| hypothetical protein BRAFLDRAFT_92198 [Branchiostoma floridae] Length = 236 Score = 41.9 bits (96), Expect = 0.097, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 55/191 (28%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D ++ ++ + + + + + ++SPGGS AG I+ +Q + Sbjct: 60 IICVMGPISDEMSSLVVAQLLFLQSESNKKPVHMYINSPGGSVTAGLGIYDTMQYILPPV 119 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + ++ L + + S + Q Sbjct: 120 NTWCVGQACSMASLLLAAGTPGCRHSLPNSRIMVHQPHGQAAGQ---------------- 163 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + +L + + R + Sbjct: 164 --------------ASDILIQAEEISKLKQQMNKLYVKHTGQELSVIEESMDRDRFMSPV 209 Query: 217 EAKKVGLIDVV 227 EA+ GLID V Sbjct: 210 EAEAFGLIDKV 220 >gi|55820449|ref|YP_138891.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus thermophilus LMG 18311] gi|55822333|ref|YP_140774.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus thermophilus CNRZ1066] gi|116627271|ref|YP_819890.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus thermophilus LMD-9] gi|67460179|sp|Q5M1A8|CLPP_STRT1 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|67460181|sp|Q5M5U4|CLPP_STRT2 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|122268126|sp|Q03M78|CLPP_STRTD RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|55736434|gb|AAV60076.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus thermophilus LMG 18311] gi|55738318|gb|AAV61959.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus thermophilus CNRZ1066] gi|116100548|gb|ABJ65694.1| ATP-dependent Clp protease proteolytic subunit ClpP [Streptococcus thermophilus LMD-9] gi|312277759|gb|ADQ62416.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus thermophilus ND03] Length = 196 Score = 41.9 bits (96), Expect = 0.097, Method: Composition-based stats. Identities = 26/196 (13%), Positives = 56/196 (28%), Gaps = 29/196 (14%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IED + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 27 IIMLTGPIEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S + + D + +K+ Sbjct: 87 QTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + P + D+ + E Sbjct: 147 RNNLEQILADNSGQPIEKVHVDAERDNWM---------------------------SAQE 179 Query: 218 AKKVGLIDVVGGQEEV 233 + G ID + ++ Sbjct: 180 TLEYGFIDEIMTNNQL 195 >gi|190892539|ref|YP_001979081.1| endopeptidase Clp protein, subunit 1 [Rhizobium etli CIAT 652] gi|218516193|ref|ZP_03513033.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli 8C-3] gi|190697818|gb|ACE91903.1| endopeptidase Clp protein, subunit 1 [Rhizobium etli CIAT 652] Length = 203 Score = 41.9 bits (96), Expect = 0.098, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D+ + ++ + ++ + + ++SPGG+ +G A++ ++ + Sbjct: 33 IIFLNGEVNDTVSALVCAQLLFLEAENPNKPINLYINSPGGAVTSGLAMYDTMRFIHAPV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + + + + G G P + + + Sbjct: 93 --------------HTLCMGTARSMGSFLLMAGEPGERAALPNASILIHQPSGGFQG--- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + RL +E Y+ + R T Sbjct: 136 -------------QASDMLIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAE 182 Query: 217 EAKKVGLIDVV 227 EA + GLID + Sbjct: 183 EALEWGLIDRI 193 >gi|120599414|ref|YP_963988.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp. W3-18-1] gi|146292590|ref|YP_001183014.1| ATP-dependent Clp protease proteolytic subunit [Shewanella putrefaciens CN-32] gi|166214710|sp|A4Y5I2|CLPP_SHEPC RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|166214712|sp|A1RL89|CLPP_SHESW RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|120559507|gb|ABM25434.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp. W3-18-1] gi|145564280|gb|ABP75215.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella putrefaciens CN-32] gi|319425892|gb|ADV53966.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella putrefaciens 200] Length = 202 Score = 41.9 bits (96), Expect = 0.098, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 50/178 (28%), Gaps = 31/178 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + + + + ++SPGGS AG AI+ +Q +K + + A Sbjct: 52 IVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFL 111 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L S V L + + + + + K Sbjct: 112 LAGGEKGKRFCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILGIKHKLNLML------ 162 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229 +E P + + +A + GL+D V Sbjct: 163 ---------------------AEHTGQPLEVIERDTDRDNFMSATQAVEYGLVDSVMT 199 >gi|319760381|ref|YP_004124319.1| ATP-dependent Clp protease, proteolytic subunit [Candidatus Blochmannia vafer str. BVAF] gi|318039095|gb|ADV33645.1| ATP-dependent Clp protease, proteolytic subunit [Candidatus Blochmannia vafer str. BVAF] Length = 215 Score = 41.9 bits (96), Expect = 0.099, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I IE+ + ++ ++ + ++ + + ++SPGG AG +I+ IQ +K Sbjct: 49 IIFITDTIENHTANSIVAQMMFLESENPTKDIHLYINSPGGLITAGMSIYDTIQFIKPDV 108 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L + A + V L + + I VK+ Sbjct: 109 STYCMGQAASMGAFLLAAGAKGKRFCLPNARVMIHQPLGSFQGQATDIAIHTKEILQVKN 168 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + K L+++ D + + Sbjct: 169 NINK------------------------------LIAKHTGKSIDIVIKDMERDCFLSAD 198 Query: 217 EAKKVGLIDVV 227 EA GL+D V Sbjct: 199 EAMDYGLVDCV 209 >gi|317123029|ref|YP_004103032.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermaerobacter marianensis DSM 12885] gi|315593009|gb|ADU52305.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermaerobacter marianensis DSM 12885] Length = 199 Score = 41.9 bits (96), Expect = 0.099, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I I+D + +I ++ + DD + + ++SPGGS +G AI+ +Q +K Sbjct: 29 IVFIGTPIDDVVANSVIAQLLFLQTDDPDRDISIYINSPGGSVDSGLAIYDTMQHIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L A S + Q Sbjct: 89 ATYCVGLAASMGAILLAGGTKGKRYALPHSRIMIHQPHSQVGG----------------- 131 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 V++ D + ++++ P ++ ++ + T Sbjct: 132 -------------TASDVKIYADQLLKLRQVANEILAKHTGQPLERIERDTERDFFMTAE 178 Query: 217 EAKKVGLIDVV 227 EAK G+ID V Sbjct: 179 EAKAYGIIDHV 189 >gi|260432980|ref|ZP_05786951.1| Clp protease [Silicibacter lacuscaerulensis ITI-1157] gi|260416808|gb|EEX10067.1| Clp protease [Silicibacter lacuscaerulensis ITI-1157] Length = 210 Score = 41.9 bits (96), Expect = 0.099, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 57/191 (29%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I D ++ ++ + ++ + + ++SPGG +G AI+ +Q +K + Sbjct: 38 IVFINGPIHDGMSHLIVAQLLHLEAENPKKEISIYINSPGGVVTSGLAIYDTMQYIKPK- 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + G G+ F P + + + + Sbjct: 97 -------------CSTLVIGQAASMGSVLLAGGEKGMRFALPNSRIMVHQPSGGYQG--- 140 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + ++ L + Sbjct: 141 -------------QASDIMIHAAETQKLKDRLYDIYAKHTGQSKKTIEKALDRDNFMSPE 187 Query: 217 EAKKVGLIDVV 227 EAK+ G ID + Sbjct: 188 EAKEWGHIDEI 198 >gi|261403256|ref|YP_003247480.1| protein of unknown function DUF114 [Methanocaldococcus vulcanius M7] gi|261370249|gb|ACX72998.1| protein of unknown function DUF114 [Methanocaldococcus vulcanius M7] Length = 278 Score = 41.9 bits (96), Expect = 0.099, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 5/151 (3%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 IEDS+E++ I D +I +PGG A A E I A+++ K + VI + Sbjct: 67 TIEDSEEILRAIRLTPEDMPIDLII---HTPGGLALASEQIALALKEHKAKTTVIIPHYA 123 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 M+ G LI+ A++ I+ + +++G + L+ + V + Sbjct: 124 MSG--GSLIALAADEILIDKNAVMGPVDPQIGQYPAASILETYYRKGEKVSDETLILVDI 181 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + + + + D + +++ Sbjct: 182 SKKAIKQMYEFVYELLKDRYGEEKSKDIAKK 212 >gi|222110341|ref|YP_002552605.1| ATP-dependent clp protease proteolytic subunit [Acidovorax ebreus TPSY] gi|254763789|sp|B9MG14|CLPP_DIAST RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|221729785|gb|ACM32605.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acidovorax ebreus TPSY] Length = 202 Score = 41.9 bits (96), Expect = 0.099, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 66/191 (34%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D ++ ++ + ++ + ++SPGGS AG AI+ +Q +K Sbjct: 37 VIFLVGEVNDQTANLVVAQLLFLESENPDKDISFYINSPGGSVTAGMAIYDTMQFIKPDV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A + S + VL ++ Sbjct: 97 STLCCGFAASMGAFLLAAGAKGKRYSLPNSKIMIHQVLGGARGQATDIE----------- 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + R+++E P +K ++ + T Sbjct: 146 -------------------IHARDILRTKDQMNRILAERTGQPIEKVKADTERDYFMTAD 186 Query: 217 EAKKVGLIDVV 227 EAK G++D V Sbjct: 187 EAKDYGIVDQV 197 >gi|254448838|ref|ZP_05062294.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma proteobacterium HTCC5015] gi|198261528|gb|EDY85817.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma proteobacterium HTCC5015] Length = 236 Score = 41.9 bits (96), Expect = 0.099, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 54/175 (30%), Gaps = 29/175 (16%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + D+ + + ++SPGGS AG AI+ ++ +K + + A Sbjct: 87 IVAQLLFLEADNPDKDISLYINSPGGSVTAGMAIYDTMRFIKPDVSTLCIGQAASMGAFL 146 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L A A S V L + + + +++ + K Sbjct: 147 LSGGAKGKRFALPNSSVMIHQPLG---GFQGQATDIDIHARNILKTKEKLN--------- 194 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 ++ V EAK+ GLID V Sbjct: 195 -------RMLADHTGQPFERV----------VEDTERDNFMGADEAKEYGLIDDV 232 >gi|119774361|ref|YP_927101.1| ATP-dependent Clp protease proteolytic subunit [Shewanella amazonensis SB2B] gi|171704645|sp|A1S4X5|CLPP_SHEAM RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|119766861|gb|ABL99431.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella amazonensis SB2B] Length = 202 Score = 41.9 bits (96), Expect = 0.099, Method: Composition-based stats. Identities = 20/180 (11%), Positives = 48/180 (26%), Gaps = 31/180 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + ++ + + ++SPGGS AG AI+ +Q +K + + + Sbjct: 53 IVAQLLFLESENPDKEIYLYINSPGGSVTAGMAIYDTMQFIKPKVSTVCIGQACS---MG 109 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 A + + + + + + + K Sbjct: 110 AFLLAGGEKGMRHCLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKHKLNQMLSH---- 165 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231 P + + +A + GLID V Sbjct: 166 -----------------------HTGQPMEVIERDTDRDNFMSATQAVEYGLIDSVLTSR 202 >gi|332978057|gb|EGK14795.1| ATP-dependent Clp protease, protease subunit [Desmospora sp. 8437] Length = 201 Score = 41.9 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 64/192 (33%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I I+DS ++ ++ ++ DD + + ++SPGGS AG AI+ +Q +K Sbjct: 37 IIFIGSPIDDSVANSVMAQMLFLAADDPDKEISLYINSPGGSITAGMAIYDTMQYIKPDV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L Sbjct: 97 STICVGMAASMGAFLLAAGTKGKRYALPNSEVMIHQPLGGVRGQ---------------- 140 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 +Q+ + + + +++ P K SD + Sbjct: 141 --------------AADIQIHAEWILKTRKRIYEILAGRTGQPLSKIERDSDRDFFMDAQ 186 Query: 217 EAKKVGLIDVVG 228 EAK+ GL+D V Sbjct: 187 EAKEYGLVDQVM 198 >gi|319935305|ref|ZP_08009743.1| ATP-dependent Clp protease proteolytic subunit [Coprobacillus sp. 29_1] gi|319809713|gb|EFW06114.1| ATP-dependent Clp protease proteolytic subunit [Coprobacillus sp. 29_1] Length = 194 Score = 41.9 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 63/194 (32%), Gaps = 31/194 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + ++ ++ + DS+ + + ++SPGGS AG AI+ + VK Sbjct: 29 IIMLCGEINDEVASSIVSQLLYLESLDSSADIYMYINSPGGSVSAGLAIYDTMNFVKCDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I+ + A L + A + S + L + ++ K + Sbjct: 89 STISIGLSASMGAFLLAAGQKGKRCALQNSEIMIHQPLG---GTNGQASDIEITTKHILR 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 K + R I D + Sbjct: 146 QKEKLNKLLSEMTSQPL----------------------RKIKKDTDRDY----FMNAYD 179 Query: 218 AKKVGLIDVVGGQE 231 A + GLID V ++ Sbjct: 180 ALEYGLIDEVLTKD 193 >gi|302384943|ref|YP_003820765.1| Endopeptidase Clp [Clostridium saccharolyticum WM1] gi|302195571|gb|ADL03142.1| Endopeptidase Clp [Clostridium saccharolyticum WM1] Length = 197 Score = 41.9 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 31/195 (15%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + + ++ ++ + D + + ++SPGGS G AI + +K Sbjct: 30 IIMLNGTVTNETASLIMAQMLFLESADCTKDINLYINSPGGSVTDGFAIMDTMNYIKCDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I+ +A++ L S A + S +L P + L I+ Sbjct: 90 STISIGQSGSAASLLLASGKKGKRFALKNS-----EILIHQPSISGGLQGQATDIRI--- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + ++ + + S P ++ + T Sbjct: 142 --------------------HSEWLERTKEKLHEIYSRLTGQPLNRIQEDMERDHYLTAE 181 Query: 217 EAKKVGLIDVVGGQE 231 EAK GLID + ++ Sbjct: 182 EAKDYGLIDEILNRQ 196 >gi|192360657|ref|YP_001982472.1| ATP-dependent Clp protease proteolytic subunit [Cellvibrio japonicus Ueda107] gi|190686822|gb|ACE84500.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cellvibrio japonicus Ueda107] Length = 214 Score = 41.9 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 57/191 (29%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 43 VIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 102 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A S V Sbjct: 103 STMCIGQACSMGAFLLNAGAEGKRFCLPNSRVMIHQPSGGAQGQ---------------- 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + + L++ P ++ + Sbjct: 147 --------------ASDIHIQAQEILKIRARLNELMAHHSGQPIERIEVDTERDNFMSAQ 192 Query: 217 EAKKVGLIDVV 227 +AK GLID V Sbjct: 193 QAKDYGLIDAV 203 >gi|225389281|ref|ZP_03759005.1| hypothetical protein CLOSTASPAR_03027 [Clostridium asparagiforme DSM 15981] gi|225044660|gb|EEG54906.1| hypothetical protein CLOSTASPAR_03027 [Clostridium asparagiforme DSM 15981] Length = 193 Score = 41.9 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 60/183 (32%), Gaps = 31/183 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++ ++ + +D + + ++SPGGS AG AI+ + +K+ I + Sbjct: 39 VSASLIVAQLLFLEAEDPGKDINLYINSPGGSVTAGMAIYDTMNYIKSDVSTICIGMAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L A + S + + ++ + +++ + K Sbjct: 99 MGAFLLSGGAKGKRFSLPNSQIMIHQPSG---GAQGQATEIKIVAENILKTKRKLNEIL- 154 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDV 226 + + P + ++ + + EA++ GLID Sbjct: 155 --------------------------AANTGKPLEVIERDTERDYYMSAEEAREYGLIDQ 188 Query: 227 VGG 229 + Sbjct: 189 IIT 191 >gi|15888940|ref|NP_354621.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium tumefaciens str. C58] gi|21759065|sp|Q8UEX6|CLPP1_AGRT5 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; AltName: Full=Endopeptidase Clp 1 gi|15156717|gb|AAK87406.1| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium tumefaciens str. C58] Length = 202 Score = 41.9 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 26/196 (13%), Positives = 68/196 (34%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+++D+ + ++ + ++ + + ++SPGG +G A++ ++ ++ Sbjct: 33 IIFLNGEVDDTVSALVCAQLLFLEAENPKKPIHLYINSPGGMVTSGFAMYDTMRYIRAPV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + + + + G G P + + + Sbjct: 93 --------------HTLCMGTARSMGSFLLMAGEPGTRAALPNASILIHQPSGGFQG--- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + + + + H RL +E Y++ + R T Sbjct: 136 -------------QASDMLIHAEEIRQTKHRMTRLYAEHCGRSYEEFETAMDRDRFMTVQ 182 Query: 217 EAKKVGLIDVVGGQEE 232 EA + GLID + E Sbjct: 183 EALEWGLIDRILEVRE 198 >gi|318040432|ref|ZP_07972388.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. CB0101] Length = 200 Score = 41.9 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 63/187 (33%), Gaps = 32/187 (17%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 + I +S L+ ++ + +D++ + + ++SPGGS AG AI+ IQ VK+ I Sbjct: 38 EVNDAIANS--LVAQMLYLDSEDNSKPIYLYINSPGGSVTAGLAIYDTIQYVKSDVVTIC 95 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + A L + +A S + L + ++ Sbjct: 96 VGLAASMGAFLLGAGTKGKRLALPHSRIMIHQPLGGTSQRQASDIEIEAR---------- 145 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220 + + +++ K +D + + EAK Sbjct: 146 -------------------EILRIKDMLNQSMADMTGQELAKIEKDTDRDYFLSAEEAKN 186 Query: 221 VGLIDVV 227 GLID V Sbjct: 187 YGLIDRV 193 >gi|254485779|ref|ZP_05098984.1| Clp protease [Roseobacter sp. GAI101] gi|214042648|gb|EEB83286.1| Clp protease [Roseobacter sp. GAI101] Length = 215 Score = 41.9 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 57/191 (29%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + + ++SPGG +G +I+ +Q +K + Sbjct: 38 IIFLSGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + S V Y Sbjct: 98 STLVIGQAASMGSLLLQAGEKGMRFSLPNSRVMVHQPSGGYQGQ---------------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + + + +K L + Sbjct: 142 --------------ATDIMIHAQETQKLKTRLNEIYVKHTGQSLEKVEAALERDNFMSPE 187 Query: 217 EAKKVGLIDVV 227 EAK GLID + Sbjct: 188 EAKDWGLIDEI 198 >gi|197284027|ref|YP_002149899.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis HI4320] gi|226329068|ref|ZP_03804586.1| hypothetical protein PROPEN_02971 [Proteus penneri ATCC 35198] gi|227358102|ref|ZP_03842444.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis ATCC 29906] gi|226706465|sp|B4EU53|CLPP_PROMH RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|194681514|emb|CAR40393.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis HI4320] gi|225202254|gb|EEG84608.1| hypothetical protein PROPEN_02971 [Proteus penneri ATCC 35198] gi|227161837|gb|EEI46869.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis ATCC 29906] Length = 207 Score = 41.9 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 IIFLTGQVEDHMANLIVAQMLFLEAENPEKDINLYINSPGGVITAGMSIYDTMQYIKADV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A + S V L Y Sbjct: 102 STICMGQACSMGAFLLSAGAKGKRICLPNSRVMIHQPLGGYQGQ---------------- 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 +Q+ + L+++ ++ R + Sbjct: 146 --------------ATDIQIHAQEILKVKSRMNELMAQHTGKSIEEIERDTERDRFLSAN 191 Query: 217 EAKKVGLIDVV 227 EA + GL+D V Sbjct: 192 EALEYGLVDKV 202 >gi|154175235|ref|YP_001407437.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter curvus 525.92] gi|112803266|gb|EAU00610.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter curvus 525.92] Length = 196 Score = 41.9 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+IED + ++ ++ + +D + + ++SPGG +G +IF + +K Sbjct: 30 IVMLSGEIEDGMAASIVAQLLFLEAEDPEKDIYLYINSPGGVITSGFSIFDTMNYIKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A A S + L ++ Sbjct: 90 CTICIGQAASMGAFLLSCGAPGKRYALPNSRIMIHQPLGGARGQASDIE----------- 138 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216 + + +++++ +K + Sbjct: 139 -------------------IQAREILRLKEILNGILAKNTGQKLNKIVKDTERDFFMSSH 179 Query: 217 EAKKVGLIDVV 227 EAK+ GLID + Sbjct: 180 EAKEYGLIDKI 190 >gi|15643458|ref|NP_228504.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga maritima MSB8] gi|148269380|ref|YP_001243840.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga petrophila RKU-1] gi|170288038|ref|YP_001738276.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga sp. RQ2] gi|281411923|ref|YP_003346002.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga naphthophila RKU-10] gi|6685314|sp|Q9WZF9|CLPP_THEMA RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|166214719|sp|A5IJ91|CLPP_THEP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|226706553|sp|B1L812|CLPP_THESQ RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|4981218|gb|AAD35777.1|AE001741_10 ATP-dependent Clp protease, proteolytic subunit [Thermotoga maritima MSB8] gi|147734924|gb|ABQ46264.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermotoga petrophila RKU-1] gi|170175541|gb|ACB08593.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga sp. RQ2] gi|281373026|gb|ADA66588.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga naphthophila RKU-10] Length = 203 Score = 41.9 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 79/230 (34%), Gaps = 35/230 (15%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERISRD 63 KKI +YV + + + ++ + + + I+D +I ++ + + Sbjct: 6 KKIIDQYVPIVVESTGRYERAYDIFSRLLKDRI--VFLGSPIDDYVANLVIAQLLFLEAE 63 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 D + + ++SPGGS AG AI+ +Q +K I + +A L + A A Sbjct: 64 DPDKDVYLYINSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYA 123 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 + + L P K E+ Sbjct: 124 LPNARIMIHQPLGG------------------AEGPAKDVEIITREL------------L 153 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEE 232 R++S+ P +K +D + + EAK+ G++D V E Sbjct: 154 RIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVVSTRE 203 >gi|126733145|ref|ZP_01748892.1| Clp protease, putative [Roseobacter sp. CCS2] gi|126716011|gb|EBA12875.1| Clp protease, putative [Roseobacter sp. CCS2] Length = 206 Score = 41.9 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + ++SPGG +G +I+ +Q ++ + Sbjct: 37 IIFVNGPVHDGMSQLIVAQLLHLESENPKKEISMYINSPGGVVTSGLSIYDTMQYIRPKV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + GS G+ F P + + + + Sbjct: 97 ST--------------LVIGQAASMGSLLLTAGSEGMRFSLPNSRVMVHQPSGGYQG--- 139 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + + + K L + Sbjct: 140 -------------QATDIMIHAAETQKLKTRLNEIYVKHTGNTLKKVEAALERDNFMSPE 186 Query: 217 EAKKVGLIDVV 227 EAK+ GLID + Sbjct: 187 EAKEWGLIDEI 197 >gi|47216266|emb|CAG05962.1| unnamed protein product [Tetraodon nigroviridis] Length = 249 Score = 41.9 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+DS +I ++ + + + + + ++SPGG AG AI+ +Q + N Sbjct: 56 IICVMGPIDDSVASLIIAQLLFLQSESNNKPIHMYINSPGGVVTAGLAIYDTMQYILNPI 115 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 A++ + A+ + + + + + + + + Sbjct: 116 STWCVG---QAASMGSLLLAAGTAGMRHSLPNARVMIHQPSGGARGQATDIAIQAEEILK 172 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216 + ++ P + + + R + Sbjct: 173 LK---------------------------RQINTIYAKHTGQPLETIESIMERDRYMSPM 205 Query: 217 EAKKVGLIDVV 227 EA+ GLID V Sbjct: 206 EAQDFGLIDRV 216 >gi|254410742|ref|ZP_05024520.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Microcoleus chthonoplastes PCC 7420] gi|196182097|gb|EDX77083.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Microcoleus chthonoplastes PCC 7420] Length = 202 Score = 41.9 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 59/176 (33%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + DD + + ++SPGGS AG I+ + +++ I + A Sbjct: 42 IVAQLLFLEADDPEKDIYLYINSPGGSVTAGMGIYDTMNQIRPDVCTICVGLAASMGAFL 101 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A ++ S + L ++ Sbjct: 102 LSAGAKGKRMSLPHSRIMIHQPLGGAQGQASDIE-------------------------- 135 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 + + +L++E + P D+ ++ + + EAK LID V Sbjct: 136 ----IQAKEILYHKQRLNQLLAEHTDQPLDRIAEDTERDFFMSAEEAKDYRLIDQV 187 >gi|163759316|ref|ZP_02166402.1| ATP-dependent Clp protease proteolytic subunit [Hoeflea phototrophica DFL-43] gi|162283720|gb|EDQ34005.1| ATP-dependent Clp protease proteolytic subunit [Hoeflea phototrophica DFL-43] Length = 210 Score = 41.9 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 65/203 (32%), Gaps = 33/203 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G +ED + + ++ + ++ + + ++SPGG AG AI+ +Q +K Sbjct: 37 IIFITGPVEDHMATLVCAQLLFLEAENPKKEIALYINSPGGVVTAGMAIYDTMQFIKPAI 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + AAS G L+ CA + + + V + + + + Sbjct: 97 STLCVGQ--AASMGSLLLCAGEKGMRFA-TPNARVMVHQPSGGFQGQASDIERHAQDIIK 153 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + Y+ L T Sbjct: 154 MK---------------------------RRLNEVYVKHTGQDYETVEKTLDRDHFMTAE 186 Query: 217 EAKKVGLIDVVGGQEEVWQSLYA 239 EA + GLID V + E ++ Sbjct: 187 EALEFGLIDRVFDKRENIEAPAE 209 >gi|197105280|ref|YP_002130657.1| ATP-dependent Clp protease, proteolytic subunit [Phenylobacterium zucineum HLK1] gi|196478700|gb|ACG78228.1| ATP-dependent Clp protease, proteolytic subunit [Phenylobacterium zucineum HLK1] Length = 205 Score = 41.9 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G +ED + ++ + ++ + + ++SPGG +G AI+ +Q + + Sbjct: 37 IVFLAGPVEDGMASLICAQLLHLEAENPKKEIQMYINSPGGVVTSGLAIYDTMQYI--KS 94 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 PVIT MAAS G + A + + + + Sbjct: 95 PVITLCLGMAASMGSFLLMAGEKG----QRIALPNSRIMVHQPSGGY------------- 137 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + + + ++ P + D + T Sbjct: 138 ---------SGKATDIQRHA--EDIIKTKRRLNEIYAKHTGQPIEAVEETLDRDFFMTAQ 186 Query: 217 EAKKVGLIDVV 227 EAK GL+D V Sbjct: 187 EAKDWGLVDHV 197 >gi|170718338|ref|YP_001783566.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus somnus 2336] gi|189082460|sp|B0UW20|CLPP_HAES2 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|168826467|gb|ACA31838.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus somnus 2336] Length = 193 Score = 41.9 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED ++ ++ + +D A + + ++SPGGS AG AI+ +Q +K Sbjct: 29 VIFLTGEVEDRMANLIVAQLLFLEAEDPAKDINIYINSPGGSVTAGMAIYDTMQFIKPNV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A + V L + Sbjct: 89 RTLCIGQACSMGAFLLAGGTAGKRAALPHARVMIHQPLGGFRGQ---------------- 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 +Q+ + ++ ++ + Sbjct: 133 --------------ASDIQIHAQEILKIKQTLNERLAFHTGQSIEQIEQDTDRDNFMSAE 178 Query: 217 EAKKVGLIDVV 227 +AK GL+D V Sbjct: 179 QAKLYGLVDDV 189 >gi|208779709|ref|ZP_03247053.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella novicida FTG] gi|208744164|gb|EDZ90464.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella novicida FTG] Length = 201 Score = 41.9 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 57/198 (28%), Gaps = 33/198 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++ D +I ++ + +D + ++SPGG AG ++ +Q +K Sbjct: 32 IVFLNGEVNDHSANLVIAQLLFLESEDPNKDIYFYINSPGGMVTAGMGVYDTMQFIKPDV 91 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L A + +S + L + ++ +I +K Sbjct: 92 STICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKD 151 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216 K + + Sbjct: 152 RLNKVL------------------------------AHHTGQDLETIVKDTDRDNFMMAD 181 Query: 217 EAKKVGLIDVVGGQEEVW 234 EAK GLID V E Sbjct: 182 EAKAYGLIDHVIESREAI 199 >gi|46241427|gb|AAS82913.1| capsid protein [Wolbachia phage WO] gi|46241431|gb|AAS82915.1| capsid protein [Wolbachia phage WO] gi|46241433|gb|AAS82916.1| capsid protein [Wolbachia phage WO] gi|46241435|gb|AAS82917.1| capsid protein [Wolbachia phage WO] gi|46241437|gb|AAS82918.1| capsid protein [Wolbachia phage WO] gi|46241441|gb|AAS82920.1| capsid protein [Wolbachia phage WO] gi|46241443|gb|AAS82921.1| capsid protein [Wolbachia phage WO] gi|46241451|gb|AAS82925.1| capsid protein [Wolbachia phage WO] gi|46241453|gb|AAS82926.1| capsid protein [Wolbachia phage WO] gi|46241455|gb|AAS82927.1| capsid protein [Wolbachia phage WO] gi|46241465|gb|AAS82932.1| capsid protein [Wolbachia phage WO] gi|46241467|gb|AAS82933.1| capsid protein [Wolbachia phage WO] Length = 131 Score = 41.9 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P + ++++ +Q VD Y FV+L++ +RN+ + G + G +A ++GL D Sbjct: 1 PHEPMTSESLESLQKEVDRLYEMFVQLIARNRNLSIEAIKSTEAGLYF-GEKAVEIGLAD 59 Query: 226 VVGGQEEVWQ 235 V E Sbjct: 60 GVTTFFEFIN 69 >gi|296156719|ref|ZP_06839557.1| protein of unknown function DUF107 [Burkholderia sp. Ch1-1] gi|295893318|gb|EFG73098.1| protein of unknown function DUF107 [Burkholderia sp. Ch1-1] Length = 517 Score = 41.9 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 33/250 (13%), Positives = 72/250 (28%), Gaps = 22/250 (8%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATAL 69 + + V I + G I + ++ ++R + D+ A Sbjct: 22 LLAFGFASCESTGLDVPLRAAVAPSSVVVIPVNGAISPASADFIVRSLQRAA-DERAQLA 80 Query: 70 IVSLSSPGGSAYAGEAIFRAI----------------QKVKNRKPVITEVHEMAASAGYL 113 ++ L +PGG + I +AI + ++ H A + G Sbjct: 81 VLQLDTPGGLDTSMRQIIKAILASPVPVATFIAPSGARAASAGTYIVYASHIAAMAPGTN 140 Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 + A+ I + + + G P + +S A S + Sbjct: 141 LGAATPIQMGIGGAEPPAGGGAPGLPGIGGGGGGGSAGPAKPSASAASASTGSASALPLD 200 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 ++R +++ R D + + + A+A ++D + Sbjct: 201 TQSTEMRKQVHDAAAYIRGLAQMRGRNADWAERAVREAVSLSAADALAQHVVD--LNARD 258 Query: 233 VWQSLYALGV 242 V L L Sbjct: 259 VPDLLRQLDG 268 >gi|126173838|ref|YP_001049987.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica OS155] gi|153000122|ref|YP_001365803.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica OS185] gi|160874744|ref|YP_001554060.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica OS195] gi|217973910|ref|YP_002358661.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica OS223] gi|304409711|ref|ZP_07391331.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella baltica OS183] gi|307304067|ref|ZP_07583820.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella baltica BA175] gi|166214708|sp|A3D305|CLPP_SHEB5 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|166214709|sp|A6WLQ1|CLPP_SHEB8 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|189082464|sp|A9KWH7|CLPP_SHEB9 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|254763799|sp|B8E5E9|CLPP_SHEB2 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|125997043|gb|ABN61118.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella baltica OS155] gi|151364740|gb|ABS07740.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella baltica OS185] gi|160860266|gb|ABX48800.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella baltica OS195] gi|217499045|gb|ACK47238.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella baltica OS223] gi|304352229|gb|EFM16627.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella baltica OS183] gi|306912965|gb|EFN43388.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella baltica BA175] gi|315266986|gb|ADT93839.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella baltica OS678] Length = 202 Score = 41.9 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 50/178 (28%), Gaps = 31/178 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + + + + ++SPGGS AG AI+ +Q +K + A++ Sbjct: 52 IVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIG---QAASMG 108 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 A + + + + + K + K Sbjct: 109 AFLLAGGEKGKRHCLPNSRVMIHQPLGGFQGQASDIAIHAKEILGIKNKLNQML------ 162 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229 +E P + + +A + GL+D V Sbjct: 163 ---------------------AEHTGQPLEVVERDTDRDNFMSATQAVEYGLVDSVMT 199 >gi|206564035|ref|YP_002234798.1| family S49 serine peptidase [Burkholderia cenocepacia J2315] gi|198040075|emb|CAR56056.1| serine peptidase, family S49 [Burkholderia cenocepacia J2315] Length = 516 Score = 41.9 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 70/195 (35%), Gaps = 5/195 (2%) Query: 38 VARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK- 94 V I + G I + ++ ++R +R+ + A+ + L +PGG + I +A+ + Sbjct: 57 VVVIPVNGAIGPASADFIVRSLDRAAREHAPLAI-LQLDTPGGLDTSMRQIIKAVLRSPV 115 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + AASAG I AS+ A + +G+ + + + Sbjct: 116 PVAAFVAPGGARAASAGTYIVYASHFAAMAPGTNLGAASPVQFGIGGAAPPGANPAAPRP 175 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIW 213 +S + + ++R +++ R + + + Sbjct: 176 TGASGASGVSDAAAVLPTDTQSTEIRKAIQDASAYIRGLAQLRGRNVEWAERAVREAVSL 235 Query: 214 TGAEAKKVGLIDVVG 228 + EA+ ++DV+ Sbjct: 236 SANEARAQHVVDVIA 250 >gi|169625037|ref|XP_001805923.1| hypothetical protein SNOG_15785 [Phaeosphaeria nodorum SN15] gi|160705586|gb|EAT76880.2| hypothetical protein SNOG_15785 [Phaeosphaeria nodorum SN15] Length = 228 Score = 41.9 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 63/192 (32%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++EDS +I ++ + ++ + + ++SPGGS AG AI+ + +++ Sbjct: 52 IITLNGEVEDSMSAVVIAQLLFLEAENPEKPISMYINSPGGSVSAGLAIYDTMNYIRSPV 111 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + V Y Sbjct: 112 STTCMGMAASMGSLLLAGGEPGQRYILPHARVMIHQPSGGYRGK---------------- 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 S++ A ++++ + + L E ++ + + Sbjct: 156 ---------ASDIADHAKEILRIRDRLNRIYQNHLTKER---TLEEIEKYMERDYYMDAE 203 Query: 217 EAKKVGLIDVVG 228 EA + G++D + Sbjct: 204 EAVEFGIVDKIM 215 >gi|165933331|ref|YP_001650120.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia rickettsii str. Iowa] gi|165908418|gb|ABY72714.1| ATP-dependent endopeptidase clp proteolytic subunit [Rickettsia rickettsii str. Iowa] Length = 216 Score = 41.9 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 29/187 (15%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + ++ + + ++SPGG AG AI+ +Q +K + + A S G Sbjct: 59 IVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQ--ACSMGS 116 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L+ C + I+ +K + + Sbjct: 117 LLLCGGEKGMR-----YSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSK 171 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 Q +Q + S + EAKK GL+D + + Sbjct: 172 HTEQELQHIEKSMERDN----------------------FMSPEEAKKFGLVDNIISSRD 209 Query: 233 VWQSLYA 239 V L Sbjct: 210 VMALLAK 216 >gi|26989024|ref|NP_744449.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida KT2440] gi|148548677|ref|YP_001268779.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida F1] gi|38257487|sp|Q88KJ0|CLPP_PSEPK RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|166214701|sp|A5W635|CLPP_PSEP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|24983847|gb|AAN67913.1|AE016423_8 ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas putida KT2440] gi|148512735|gb|ABQ79595.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudomonas putida F1] gi|171362771|dbj|BAG15849.1| probable ATP-dependent clp protease [Pseudomonas putida] Length = 213 Score = 41.9 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 45 VIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + ++ I ++ Sbjct: 105 STICIGQACSMGAFLLAAGAKGKRHCLPNSRVMIHQPLGGFQGQATDIEIHAQEILNI-- 162 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 L++ + + + Sbjct: 163 ----------------------------KARLNELLAYHTGQDLETIKRDTERDNFMSAS 194 Query: 217 EAKKVGLIDVV 227 A + GLID V Sbjct: 195 RAAEYGLIDSV 205 >gi|294340353|emb|CAZ88734.1| ATP-dependent Clp protease proteolytic subunit precursor (Endopeptidase Clp) (Caseinolytic protease) (Protease Ti) (Heat shock protein F21.5) [Thiomonas sp. 3As] Length = 202 Score = 41.9 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D ++ ++ + ++ + + ++SPGGS AG AIF +Q +K Sbjct: 37 VIFLVGPINDQMANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPDV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A + + A + S + ++ Sbjct: 97 STLCTGIAASMGAFLMAAGAKGKRYSLPNSRIMIHQPSGGAQGQATDIE----------- 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + +++E +K + + Sbjct: 146 -------------------IQAREILYLRERLNGILAERTGQTLEKIGIDTERDFFMSAD 186 Query: 217 EAKKVGLIDVV 227 EAK GLID V Sbjct: 187 EAKDYGLIDEV 197 >gi|332288867|ref|YP_004419719.1| ATP-dependent Clp protease proteolytic subunit [Gallibacterium anatis UMN179] gi|330431763|gb|AEC16822.1| ATP-dependent Clp protease proteolytic subunit [Gallibacterium anatis UMN179] Length = 195 Score = 41.9 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 63/197 (31%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED+ ++ ++ + ++ + + ++SPGG AG AI+ +Q +K Sbjct: 29 VIFLNGQVEDNMANLIVAQLLFLEAENPDEDINLYINSPGGVVTAGMAIYDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A+ A + + L Y Sbjct: 89 RTLCMGQACSMGAFLLAGGAAGKRFALPHARIMIHQPLGGYRGQ---------------- 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 +Q+ + + ++ P + + Sbjct: 133 --------------ASDIQIHAQEILKIKDTLNQRLAFHTGQPLEVVERDTDRDNFMSAQ 178 Query: 217 EAKKVGLIDVVGGQEEV 233 AK+ GLID V ++ Sbjct: 179 AAKEYGLIDEVLTHRQL 195 >gi|170049615|ref|XP_001857723.1| ATP-dependent Clp protease proteolytic subunit [Culex quinquefasciatus] gi|167871378|gb|EDS34761.1| ATP-dependent Clp protease proteolytic subunit [Culex quinquefasciatus] Length = 225 Score = 41.9 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D ++ ++ + ++ + + ++SPGGS AG AI+ +Q VK Sbjct: 53 IICLMGPIHDDLSSLIVAQLLFLQSENGTKPIHMYINSPGGSVTAGLAIYDTMQYVKPPV 112 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A + + + + Sbjct: 113 ATWCVGQACSMGSLLLAAGAPGMRHSLPNARIMIHQPSGGAQGQ---------------- 156 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216 +Q+ + + + ++ PY+ + Sbjct: 157 --------------ATDIQIQAEEILKLKKQLTEIYAKHTKSPYETLLAKMERDTFLNPE 202 Query: 217 EAKKVGLIDVV 227 EA+ +G+ID V Sbjct: 203 EAQTLGIIDTV 213 >gi|239623656|ref|ZP_04666687.1| ATP-dependent Clp protease [Clostridiales bacterium 1_7_47_FAA] gi|239521687|gb|EEQ61553.1| ATP-dependent Clp protease [Clostridiales bacterium 1_7_47FAA] Length = 193 Score = 41.9 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 56/181 (30%), Gaps = 31/181 (17%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++ ++ + +D + + ++SPGGS AG AI+ + +K I + Sbjct: 39 VSASLVVAQLLFLESEDPGKDIHLYINSPGGSVSAGFAIYDTMNYIKCDVSTICIGMAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L A A S + K ++ + +++ + K Sbjct: 99 MGAFLLAGGAKGKRFALPNSEIMIHQPSG---GAKGQATEIKIVAENILKTRKKLNDIL- 154 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226 + + P + + EAK+ GLID Sbjct: 155 --------------------------AANTGRPIEVIERDTERDNYMSAEEAKEYGLIDE 188 Query: 227 V 227 + Sbjct: 189 I 189 >gi|145635952|ref|ZP_01791637.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae PittAA] gi|319897851|ref|YP_004136048.1| ATP-dependent clp protease proteolytic subunit [Haemophilus influenzae F3031] gi|145266785|gb|EDK06804.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae PittAA] gi|301169432|emb|CBW29032.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Haemophilus influenzae 10810] gi|317433357|emb|CBY81736.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae F3031] Length = 193 Score = 41.9 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 VIFLSGEVEDRMANLIVAQLLFLESEDPTKDINIYINSPGGSVTAGMAIYDTMQFIKPDI 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A + V L + Sbjct: 89 RTLCIGQACSMGAFLLAGGTAGKRAALPNARVMIHQPLGGFRGQ---------------- 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +Q+ + H ++ ++ +D + + Sbjct: 133 --------------ASDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDTDRDNFMSAE 178 Query: 217 EAKKVGLIDVV 227 EA+ GL+D V Sbjct: 179 EAQVYGLVDEV 189 >gi|123967079|ref|YP_001012160.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT 9515] gi|123201445|gb|ABM73053.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT 9515] Length = 204 Score = 41.9 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 31/178 (17%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 L+ ++ + +D + + ++SPGGS AG AI+ +Q++ I + A Sbjct: 52 DSLVAQLLFLEAEDPDKDIQIYINSPGGSVTAGLAIYDTMQQISPDVVTICFGVAASMGA 111 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 L A +A S + L ++ Sbjct: 112 FLLSGGAKGKRLALPNSRIMIHQPLGGAQGQAVEIE------------------------ 147 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 + + L+SE +K ++ + + EA + GLID V Sbjct: 148 ------IQAKEILFLKKTLNSLLSEHTGQSLEKINEDTERDYFLSPEEAVQYGLIDKV 199 >gi|83646148|ref|YP_434583.1| 3-hydroxyacyl-CoA dehydrogenase [Hahella chejuensis KCTC 2396] gi|83634191|gb|ABC30158.1| 3-hydroxyacyl-CoA dehydrogenase [Hahella chejuensis KCTC 2396] Length = 712 Score = 41.9 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 38/94 (40%), Gaps = 6/94 (6%) Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 D ++ G+ +G A ++GL+D + + + + L + + K + + Sbjct: 179 DAMDMILGGKPVSGERAHELGLVDHIAPRRQFANAA--LAIVRDNPKPHEPSLGGKILNA 236 Query: 262 DLKNLSISSLLEDTIP-LMKQTKVQGLWA---VW 291 L + ++S L+ + ++ +A +W Sbjct: 237 SLLSGPVASELQRRLRKRADRSHYPAPYAVVELW 270 >gi|310641963|ref|YP_003946721.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus polymyxa SC2] gi|309246913|gb|ADO56480.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus polymyxa SC2] Length = 194 Score = 41.9 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 64/194 (32%), Gaps = 33/194 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + I+D + +I ++ ++ +D + + ++SPGGS AG AI+ +Q +K Sbjct: 30 IVFVGATIDDQLANSIIAQLLFLAAEDPEKDIYMYINSPGGSTSAGFAIYDTMQYIKPEV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L++ A A S + Sbjct: 90 HTICTGFAASFGAILLLAGAKGKRSALPNSEIMIHQPHGGAQGQ---------------- 133 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + + R+ +E ++K D + + Sbjct: 134 --------------ASDIAISAKRILWTREKATRITAERTGQSFEKVEKDMDRDFYMSAQ 179 Query: 217 EAKKVGLIDVVGGQ 230 EA + G+ID V Sbjct: 180 EALEYGVIDQVITS 193 >gi|212709197|ref|ZP_03317325.1| hypothetical protein PROVALCAL_00230 [Providencia alcalifaciens DSM 30120] gi|212688109|gb|EEB47637.1| hypothetical protein PROVALCAL_00230 [Providencia alcalifaciens DSM 30120] Length = 206 Score = 41.9 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIQLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + S V L Y ++ Sbjct: 102 STICMGQACSMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAQE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + L+++ ++ R + Sbjct: 156 ------------------------ILKVKSRMNELMAQHTGKSIEEISRDTERDRFLSAN 191 Query: 217 EAKKVGLIDVV 227 EAK+ GL+D + Sbjct: 192 EAKEYGLVDHI 202 >gi|260905351|ref|ZP_05913673.1| Endopeptidase Clp [Brevibacterium linens BL2] Length = 219 Score = 41.9 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 64/190 (33%), Gaps = 33/190 (17%) Query: 41 IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 + G++ D E+I R+ +S +DS + + + ++SPGGS AI I+ + N Sbjct: 46 VVFNGELRDENGMEIISRLILLSAEDSHSDIHLWINSPGGSVPMMHAIADVIETLPNDVV 105 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 + +A L+ +A + + ++ +++V Sbjct: 106 TVAFGWAASAGQFVLMMGTPGKRLALPHARILLHQGSSGIGGAAADIELQSGDLRTV--- 162 Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAE 217 + ++E+ Y++ R +T + Sbjct: 163 ---------------------------RDTVLHRIAEATGKTYERVFEDSLRDRWFTVEQ 195 Query: 218 AKKVGLIDVV 227 A GLID + Sbjct: 196 ALDYGLIDRI 205 >gi|313499614|gb|ADR60980.1| ClpP [Pseudomonas putida BIRD-1] Length = 192 Score = 41.9 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 24 VIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 83 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + ++ I ++ Sbjct: 84 STICIGQACSMGAFLLAAGAKGKRHCLPNSRVMIHQPLGGFQGQATDIEIHAQEILNI-- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 L++ + + + Sbjct: 142 ----------------------------KARLNELLAYHTGQDLETIKRDTERDNFMSAS 173 Query: 217 EAKKVGLIDVV 227 A + GLID V Sbjct: 174 RAAEYGLIDSV 184 >gi|227486247|ref|ZP_03916563.1| endopeptidase Clp [Anaerococcus lactolyticus ATCC 51172] gi|227235658|gb|EEI85673.1| endopeptidase Clp [Anaerococcus lactolyticus ATCC 51172] Length = 205 Score = 41.9 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D S +I ++ + +D + ++SPGG +G AI+ + +K Sbjct: 40 IIFLSGEVRDEVSDIIIAQLLFLESEDPNKDIHFYINSPGGVVTSGLAIYDTMNYIKPDV 99 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S A + S + Sbjct: 100 STICIGQAASMGAVLLSSGAKGKRFSLPNSNIMIHQPSGGAQGQ---------------- 143 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGA 216 + + + + R++SE+ +D T Sbjct: 144 --------------ASDIVIQAEQILKIKANLNRILSENTGKDLATIEKDTDRDFAMTAE 189 Query: 217 EAKKVGLIDVV 227 EA K GLID V Sbjct: 190 EALKYGLIDKV 200 >gi|226304378|ref|YP_002764336.1| enoyl-CoA hydratase [Rhodococcus erythropolis PR4] gi|226183493|dbj|BAH31597.1| putative enoyl-CoA hydratase [Rhodococcus erythropolis PR4] Length = 290 Score = 41.9 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 19/219 (8%), Positives = 58/219 (26%), Gaps = 28/219 (12%) Query: 36 PHVARIAIRGQIEDSQE-------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIF- 87 VA + + + + L +R DD ++++ + P SA + Sbjct: 16 DSVAVVTLNRPDYRNAQNSVVTYALDAAFQRAVEDDDVKVIVLAGNGPHFSAGH--DLGT 73 Query: 88 ----RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 ++ V + + + + + + Sbjct: 74 PGRDHHVEYENKATMWWDHVDKPGGDQRFAREMEVYLGMCRRWREIPKPTIAMVQGACIA 133 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L + ++ P + + ++ Sbjct: 134 GGLMLAWVCDMIVAADDAFFSDPVVRMGIPG-----VEYFAHPWMVGSRFAK-------- 180 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 +L G +T A ++G+++ V ++++ + + L Sbjct: 181 -EMLFTGDRFTAQRAYEIGMVNRVVARKDLEKETFELAG 218 >gi|84686590|ref|ZP_01014483.1| Protease subunit of ATP-dependent Clp protease [Maritimibacter alkaliphilus HTCC2654] gi|84665503|gb|EAQ11980.1| Protease subunit of ATP-dependent Clp protease [Rhodobacterales bacterium HTCC2654] Length = 193 Score = 41.9 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 23/190 (12%), Positives = 59/190 (31%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D + ++ + ++ + + + ++SPGG +G +I+ +Q ++ + Sbjct: 24 IIFLNGPVHDGMSSLICAQLLFLEAENPSKEIAMYINSPGGVVTSGLSIYDTMQYIRPKV 83 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + A + + S + Y Sbjct: 84 STLVIGQAASMGSLLLTAGAPGMRFSLPNSRIMVHQPSGGYQGQ---------------- 127 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + ++ K + + ++ V L + Sbjct: 128 ---ATDIMIHAQETQKLKDRLNSIYVKHTGQKLKAV----------VDALERDNFMDPEQ 174 Query: 218 AKKVGLIDVV 227 AK GLID + Sbjct: 175 AKDWGLIDEI 184 >gi|325914956|ref|ZP_08177288.1| protease subunit of ATP-dependent protease [Xanthomonas vesicatoria ATCC 35937] gi|325538849|gb|EGD10513.1| protease subunit of ATP-dependent protease [Xanthomonas vesicatoria ATCC 35937] Length = 728 Score = 41.9 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 71/194 (36%), Gaps = 38/194 (19%) Query: 36 PHVARIAIRGQIEDS--QELIERIERISRDDSATA--LIVSLSSPGGSAYAGEAIFRAIQ 91 VA + I G I DS E + +E + + TA + V ++S GG G AI+ A+ Sbjct: 24 NDVAEVMIYGTIGDSLWSESVSALELAEQINQITASTIHVRINSGGGVVADGIAIYNALS 83 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + K + V AAS LI+ A N +V +SL+ Sbjct: 84 QHAAHK--VVFVDGQAASIASLIAMAGNEVVMYASSLLMVHA------------------ 123 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 ++ + + + ++ A + + + +L+DG Sbjct: 124 PHTIAAGNASSFRQYATALDAHA------------GAMLEAYATKTGKRSEVEQLLTDGA 171 Query: 212 --IWTGAEAKKVGL 223 +TGA+A + G Sbjct: 172 DHWYTGAQAVEFGF 185 >gi|328949699|ref|YP_004367034.1| protein of unknown function DUF114 [Marinithermus hydrothermalis DSM 14884] gi|328450023|gb|AEB10924.1| protein of unknown function DUF114 [Marinithermus hydrothermalis DSM 14884] Length = 280 Score = 41.9 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 21/183 (11%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 I+DS++++ I +D + L +PGG A E I A+++ + V V Sbjct: 68 IDDSEQVLRAIRMTDKDVPID---LVLHTPGGLVLAAEQIAEALKRHPAK--VTVFVPHY 122 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 A S G LI+ A++ IV E +++G + L L K Sbjct: 123 AMSGGTLIALAADEIVMDENAVLGPVDPQLGQYPAASILKVLETK-------DPKDIEDQ 175 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220 + A + + V + E ++ L WT EA+ Sbjct: 176 TLILADVARKALDQVKRTVKGLLADKFGE---EKAEEVAALLSQGTWTHDYPISVEEARA 232 Query: 221 VGL 223 +GL Sbjct: 233 MGL 235 >gi|28377639|ref|NP_784531.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus plantarum WCFS1] gi|254555818|ref|YP_003062235.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus plantarum JDM1] gi|300767608|ref|ZP_07077518.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179799|ref|YP_003923927.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus plantarum subsp. plantarum ST-III] gi|38257529|sp|Q88YH9|CLPP_LACPL RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|28270472|emb|CAD63374.1| endopeptidase Clp, proteolytic subunit [Lactobacillus plantarum WCFS1] gi|254044745|gb|ACT61538.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus plantarum JDM1] gi|300494593|gb|EFK29751.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045290|gb|ADN97833.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus plantarum subsp. plantarum ST-III] Length = 196 Score = 41.9 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 62/192 (32%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IED + +I ++ + DS + + ++SPGG AG AI+ + +K+ Sbjct: 29 IIMLSGPIEDNMANAIIAQLLFLDAQDSGKDIYLYINSPGGVVTAGLAIYDTMNFIKSDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ S A S + + ++ + Sbjct: 89 QTIVMGMAASMASVLASSGTKGKRFALPNSEILIHQPSGGAQGQQTEIEIVAEE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + ++++++ +K + Sbjct: 143 ------------------------ILKTRKKINQILADNSGQSVEKLNHDTERDNYLSAQ 178 Query: 217 EAKKVGLIDVVG 228 EAK GLID + Sbjct: 179 EAKDYGLIDDIM 190 >gi|304407273|ref|ZP_07388926.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus curdlanolyticus YK9] gi|304343714|gb|EFM09555.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus curdlanolyticus YK9] Length = 195 Score = 41.5 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 61/181 (33%), Gaps = 31/181 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + +I ++ ++ DD + + ++SPGGS AG AI+ +Q +K I + Sbjct: 43 ANSIIAQLLFLAADDPEKDISLYINSPGGSITAGMAIYDTMQFIKPDVSTICVGMAASMG 102 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L + A A S V L ++ Sbjct: 103 AFLLTAGAIGKRYALPNSEVMIHQPLGGAEGQASDIEIRAKR------------------ 144 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228 + +++E N P ++ +D + + EA++ GLID V Sbjct: 145 ------------ILKMRDKLNGILAERSNQPLERIEKDTDRDYFMSAEEARQYGLIDKVI 192 Query: 229 G 229 Sbjct: 193 D 193 >gi|221218018|ref|ZP_03589484.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia burgdorferi 72a] gi|221191966|gb|EEE18187.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia burgdorferi 72a] Length = 194 Score = 41.5 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I DS +I ++ + +DS+ + + L+SPGGS AG AI+ +Q +K Sbjct: 30 IIFLSGEINDSKADTVIAQLLFLESEDSSKDIYLYLNSPGGSITAGLAIYDTMQYIKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 I + A L A + S + Sbjct: 90 RTICIGQAASMGAFLLAGGAKGKRESLTYSRIMIHQPWG 128 >gi|113866131|ref|YP_724620.1| enoyl-CoA hydratase/carnithine racemase [Ralstonia eutropha H16] gi|113524907|emb|CAJ91252.1| Enoyl-CoA hydratase/carnithine racemase [Ralstonia eutropha H16] Length = 260 Score = 41.5 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 63/222 (28%), Gaps = 34/222 (15%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGS 79 S SS VA I + ++ +LI + R + DDS A+I+ + P Sbjct: 3 SMSSIRYAVRDQVAEIQLDSLPVNALNEAMIDDLIGALRRAAEDDSVRAVILGSAIPR-- 60 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + A+Q+ + I A E + G L Sbjct: 61 RFCAGLRLDAVQQSSPSQLYALVEKLYVGLCEAQFQLKKPSIAAVEGAARGGGMTLAISC 120 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + + + + A R+V R Sbjct: 121 DMIVAAEDATFGYPEIDVGMIPAIHYTHLP---------------------RIVGRHRAF 159 Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 L GR + EA ++GL+ V Q +V + AL Sbjct: 160 DL-----LFTGRAFDADEAWRLGLVSRVVPQPDVMREARALA 196 >gi|15617073|ref|NP_240286.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386686|sp|P57547|CLPP_BUCAI RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|25289846|pir||D84985 endopeptidase Clp (EC 3.4.21.92) [imported] - Buchnera sp. (strain APS) gi|10039138|dbj|BAB13172.1| ATP-dependent clp protease proteolytic subunit [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 208 Score = 41.5 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 5/159 (3%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G IED + ++ +I + ++ + + ++SPGG +G +I+ +Q VK Sbjct: 43 IIFITGAIEDNMANNIVAQILFLEAENPEKDIFLYINSPGGIITSGMSIYDTMQFVKPEI 102 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L S A S V L + + + + + Sbjct: 103 STICLGQACSMAALLLTSGAKGKRFCLPNSKVMIHQPLG---GYQGQASDIAIHAREIME 159 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 K ++ +D + + + Sbjct: 160 MKKKLNKLMSFHTGQSIKKINKDTERDCFLSANQSIKYG 198 >gi|89100460|ref|ZP_01173322.1| YqeZ [Bacillus sp. NRRL B-14911] gi|89084803|gb|EAR63942.1| YqeZ [Bacillus sp. NRRL B-14911] Length = 452 Score = 41.5 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 59/131 (45%), Gaps = 4/131 (3%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISRDDSA 66 ++ +L+ + + ++ DN V + I +E + R + ++ A Sbjct: 10 LRRAVTLLAFLGILMIMLIPEKGNADNE-VVYVVPIEETVEKGLYAFLNRAVSTAEENGA 68 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 +A+I + +PGG+ A I + + + + + ++ V+ A SAG IS + I Sbjct: 69 SAIIFEMDTPGGAVDAAGKIGKLLAETELK--TVSFVNNQALSAGAYISLNMDEIYMVPG 126 Query: 127 SLVGSIGVLFQ 137 +++GS ++ Q Sbjct: 127 AVMGSAAIIDQ 137 >gi|317124503|ref|YP_004098615.1| ATP-dependent Clp protease proteolytic subunit ClpP [Intrasporangium calvum DSM 43043] gi|315588591|gb|ADU47888.1| ATP-dependent Clp protease proteolytic subunit ClpP [Intrasporangium calvum DSM 43043] Length = 214 Score = 41.5 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 57/180 (31%), Gaps = 31/180 (17%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 ++ + ++ +S +D + + ++SPGGS AG AIF + + N + + Sbjct: 40 NANAICAQLLLLSAEDPEKDIWLYINSPGGSISAGMAIFDTMNWIPNDVATVAMGMAASM 99 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 L + A + V Sbjct: 100 GQFLLSAGTHGKRYATPHARVMMHQPSGGIGG---------------------------- 131 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVV 227 +++ + + L++E ++ SD R ++ EAK+ G +D V Sbjct: 132 --TATDIKIQAEQMLYVKKQMAELIAEHTGQTIEQIEKDSDRDRWFSAQEAKEYGFVDHV 189 >gi|114048055|ref|YP_738605.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp. MR-7] gi|123326387|sp|Q0HTK7|CLPP_SHESR RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|113889497|gb|ABI43548.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp. MR-7] Length = 202 Score = 41.5 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 49/178 (27%), Gaps = 31/178 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + + + + ++SPGGS AG AI+ +Q +K + + A Sbjct: 52 IVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFL 111 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L S V L + + + + + K Sbjct: 112 LAGGEKGKRFCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILGIKHKLNLML------ 162 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229 +E P + + +A GL+D V Sbjct: 163 ---------------------AEHTGQPLEVIERDTDRDNFMSATQAVDYGLVDAVMT 199 >gi|212636027|ref|YP_002312552.1| ATP-dependent Clp protease proteolytic subunit [Shewanella piezotolerans WP3] gi|226706473|sp|B8CRF7|CLPP_SHEPW RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|212557511|gb|ACJ29965.1| Peptidase S14, ClpP [Shewanella piezotolerans WP3] Length = 203 Score = 41.5 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 51/176 (28%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + + + + ++SPGGS AG AI+ +Q +K + + A Sbjct: 53 IVAQLLFLESESPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFL 112 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L A S V L + + + + + K Sbjct: 113 LAGGAEGKRHCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILGIKNKLNTML------ 163 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227 +E P + + EA + GL+D V Sbjct: 164 ---------------------AEHTGQPIEVIERDTDRDNFMSADEAAEYGLVDSV 198 >gi|32476643|ref|NP_869637.1| ATP-dependent Clp protease proteolytic subunit [Rhodopirellula baltica SH 1] gi|67460512|sp|Q7UK66|CLPP2_RHOBA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2; AltName: Full=Endopeptidase Clp 2 gi|32447189|emb|CAD77015.1| ATP-dependent clp protease proteolytic subunit [Rhodopirellula baltica SH 1] gi|327540248|gb|EGF26837.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodopirellula baltica WH47] Length = 195 Score = 41.5 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 31/179 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 S L+ ++ + DD + + ++SPGGS AG AI+ +Q V + Sbjct: 41 SNALVAQMLFLQADDPKKDIHMYINSPGGSITAGMAIYDTMQFVSCDVATYCIGQAASMG 100 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L + A A + + L Sbjct: 101 AVLLTAGAKGKRFALPNARIMIHQPLAGMQG----------------------------- 131 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVV 227 + V++ + ++ E +K +D R + EA GLID V Sbjct: 132 -TAREVEIHVAELRRIKQRMNEIMIEHTGHSLEKIEEDTDRDRFMSADEACSYGLIDKV 189 >gi|310657900|ref|YP_003935621.1| clpa-clpp and clpx-clpp ATP-dependent serine protease proteolytic subunit [Clostridium sticklandii DSM 519] gi|308824678|emb|CBH20716.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Clostridium sticklandii] Length = 194 Score = 41.5 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGGS AG AI+ +Q +K I + A Sbjct: 44 IVAQLLHLESEDPDKDIFLYINSPGGSITAGMAIYDTMQYIKPDVATICVGMAASMGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A A S + L + Sbjct: 104 LTAGAKGKRFALPNSEIMIHQPLGGTQGQATDIKIHAER--------------------- 142 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 + + ++++ P +K ++ + + EAK+ GLID V Sbjct: 143 ---------IIRMRNKLNEIMADRSGQPLEKIERDTERDFFMSSTEAKEYGLIDEV 189 >gi|296169615|ref|ZP_06851235.1| fatty acid oxidation complex [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895881|gb|EFG75576.1| fatty acid oxidation complex [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 714 Score = 41.5 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 81/242 (33%), Gaps = 18/242 (7%) Query: 63 DDSATALI-VSLSSPGGSAYAGEA-----IFRAIQKVKNRKPVITEVHEMAASAGYLISC 116 D A ++ ++L P GSA + +A++++ K +T V +A + Sbjct: 9 DKDADGIVTLTLDDPTGSANVMNEHYKESMHKAVERLVAEKDSVTGVVITSAKKTFFAGG 68 Query: 117 ASNIIV-AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-------PMKAEPSPFS 168 ++ A + + L+ LG + + + + Sbjct: 69 DLKSMINAGPENAGDVFTEVEDIKRDLRTLETLGKPVVAAINGAALGGGLEIALACHHRI 128 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSE---SRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 + K + + V V+ I +LS G + +AK++GLID Sbjct: 129 AADVKGLVVGLPEVTLGLLPGGGGVARTVRMFGIQNAFMNILSQGTRFKPDKAKEMGLID 188 Query: 226 VV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + G +E+ + A + W+ + + + + P + + ++ Sbjct: 189 ELVGSVDELVPAAKAWIKANPDSHEQPWDKKGYKMPGGTPSSPGLAGILPSFPALLRKQL 248 Query: 285 QG 286 +G Sbjct: 249 KG 250 >gi|89100779|ref|ZP_01173633.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus sp. NRRL B-14911] gi|89084537|gb|EAR63684.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus sp. NRRL B-14911] Length = 193 Score = 41.5 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I +I D + +I ++ ++ D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IIMIGEEINDHVANSVIAQLLFLAADAPDKDISLYINSPGGSTTAGFAIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L++ + S + L ++ Sbjct: 89 RTICTGMAASFGAMLLLAGTKGKRCSLPNSEIMIHQPLGGARGQATEIEISAKR------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + ++SE P +K + Sbjct: 143 ------------------------ILKLREHINGIISEKTGQPVEKVARDTDRDYFMSAE 178 Query: 217 EAKKVGLIDVV 227 EAK+ G+ID + Sbjct: 179 EAKEYGIIDTI 189 >gi|254361750|ref|ZP_04977885.1| S14 family endopeptidase ClpP [Mannheimia haemolytica PHL213] gi|153093285|gb|EDN74281.1| S14 family endopeptidase ClpP [Mannheimia haemolytica PHL213] Length = 197 Score = 41.5 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 62/199 (31%), Gaps = 33/199 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED+ ++ ++ + +D + + ++SPGG AG AI+ + +K Sbjct: 29 IIFLNGQVEDNMANLIVAQLLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMNFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A A + + L Sbjct: 89 ATLCTGQAASMGAFLLSAGAKGKRFALPHARIMIHQPLGGARGQ---------------- 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 +Q+ + + R ++E Y+K + Sbjct: 133 --------------ATDIQIQAEEILRLKATLTRRMAEHSGQSYEKVLADTERDNFMSAE 178 Query: 217 EAKKVGLIDVVGGQEEVWQ 235 EA + GLID V Sbjct: 179 EAAEYGLIDKVLTSRSEVA 197 >gi|332140445|ref|YP_004426183.1| Protease subunit of ATP-dependent Clp protease [Alteromonas macleodii str. 'Deep ecotype'] gi|327550467|gb|AEA97185.1| Protease subunit of ATP-dependent Clp protease [Alteromonas macleodii str. 'Deep ecotype'] Length = 153 Score = 41.5 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 56/178 (31%), Gaps = 32/178 (17%) Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119 + ++ + + ++SPGGS AG AI+ ++ +K + + A L + A Sbjct: 4 LEAENPEKDIFLYINSPGGSVTAGMAIYDTMRFIKPDVSTVCMGQAASMGAFLLSAGAKG 63 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 S V L + + I S+ Sbjct: 64 KRYCLPNSRVMIHQPLGGFQGQASDFEIHAKEILSI------------------------ 99 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV-VGGQEEVWQ 235 RL+++ Y+K + EAK+ GL+D + + +V Sbjct: 100 ------KEKLNRLLADHTGQDYEKVARDTDRDNFLSATEAKEYGLVDQVLANRSDVAA 151 >gi|121602655|ref|YP_988860.1| ATP-dependent Clp protease proteolytic subunit [Bartonella bacilliformis KC583] gi|166201800|sp|A1USA7|CLPP_BARBK RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|120614832|gb|ABM45433.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bartonella bacilliformis KC583] Length = 210 Score = 41.5 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 39/210 (18%) Query: 40 RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G +EDS ++ ++ + ++ + + ++SPGG +G AI+ +Q ++ Sbjct: 37 IIFINGPVEDSMAMLVCAQLLFLEAENPKKEISLYINSPGGVVTSGMAIYDTMQFIRPPI 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + A + + + + ++ Sbjct: 97 STLCMGQAASMGSLLLTAGAKGHRFSLPNARIMVHQPSGGFQGQASDIE----------- 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + Y+ L T Sbjct: 146 -------------------RHAQDIIRMKRHLNEIYVQHTGQDYEIIENTLDRDHFMTAE 186 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 EAK GLID +V Q ++ Sbjct: 187 EAKMFGLID------DVIQYRAETKKEEKD 210 >gi|281356561|ref|ZP_06243052.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Victivallis vadensis ATCC BAA-548] gi|281316688|gb|EFB00711.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Victivallis vadensis ATCC BAA-548] Length = 201 Score = 41.5 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 56/191 (29%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D ++ ++ + +D + + ++SPGGS AG AI+ +Q + Sbjct: 33 IILLGTPIDDDVANLIVAQLLFLQAEDPKKDIDLYINSPGGSVTAGLAIYDTMQILSCDV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L + A+ A S + Sbjct: 93 KTYCVGQCASMGAVLLCAGAAGKRFALPNSRIMIHQP---------------------WG 131 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 +V S H P K ++ + G Sbjct: 132 GAQGTAADMDIQVKEIQRLKAMLNGILSSHS---------GQPIKKIEKDTERDFFMGAE 182 Query: 217 EAKKVGLIDVV 227 +A K GL+D V Sbjct: 183 DAVKYGLVDKV 193 >gi|229817802|ref|ZP_04448084.1| hypothetical protein BIFANG_03078 [Bifidobacterium angulatum DSM 20098] gi|229785591|gb|EEP21705.1| hypothetical protein BIFANG_03078 [Bifidobacterium angulatum DSM 20098] Length = 215 Score = 41.5 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 62/181 (34%), Gaps = 30/181 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D +++ ++SPGGS A AI+ +Q +K + + Sbjct: 59 TSADDIMAQLLVLESQDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 118 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + A + + V + K Sbjct: 119 AAAILLAAGAEGKRLMLPNARVLIHQPAIDQGFGKA------------------------ 154 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226 +++ + W +++ P ++ + T +EAK+ G++D Sbjct: 155 -----TEIEIQAREMLRMREWLENTLAKHTGQPVERIRKDIEVDTFLTASEAKEYGIVDE 209 Query: 227 V 227 V Sbjct: 210 V 210 >gi|153814157|ref|ZP_01966825.1| hypothetical protein RUMTOR_00366 [Ruminococcus torques ATCC 27756] gi|317499957|ref|ZP_07958193.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae bacterium 8_1_57FAA] gi|331087820|ref|ZP_08336745.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae bacterium 3_1_46FAA] gi|145848553|gb|EDK25471.1| hypothetical protein RUMTOR_00366 [Ruminococcus torques ATCC 27756] gi|316898674|gb|EFV20709.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae bacterium 8_1_57FAA] gi|330409515|gb|EGG88956.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae bacterium 3_1_46FAA] Length = 193 Score = 41.5 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 54/181 (29%), Gaps = 31/181 (17%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++ ++ + DD + + ++SPGGS AG AI+ +Q +K + + Sbjct: 39 VSASVIVAQLLFLEADDPDKDIQLYINSPGGSVTAGMAIYDTMQYIKCDVSTVCIGMAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L A + + + ++ ++ + + + K Sbjct: 99 MGAFLLAGGKKGKRFALPNAEIMIHQPSG---GAQGQATEIQIAAEHILRTKQKLNEIL- 154 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226 + + + + EAK GLID Sbjct: 155 --------------------------AANTGQSLETIKADTERDNFMSADEAKAYGLIDE 188 Query: 227 V 227 V Sbjct: 189 V 189 >gi|186681465|ref|YP_001864661.1| ATP-dependent Clp protease proteolytic subunit [Nostoc punctiforme PCC 73102] gi|186463917|gb|ACC79718.1| peptidase S14, ClpP [Nostoc punctiforme PCC 73102] Length = 203 Score = 41.5 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 59/187 (31%), Gaps = 33/187 (17%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 I +I + ++I + + DD + + ++SPGG +G AIF +Q +K+ I Sbjct: 38 DIDDEIAN--QIIAVMLYLDSDDPGKDIYLYINSPGGMVTSGMAIFDTMQHIKSDVVTIC 95 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + + L + +A S + ++ I ++ Sbjct: 96 VGLAASMGSFLLAAGTKGKRLALPHSRIMIHQPSGGTRGQATDIEIEAREILRIRH---- 151 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220 + ++ K D + + EAK+ Sbjct: 152 --------------------------QLNGIYADKTGQTIAKIEKDMDRDFFMSAEEAKE 185 Query: 221 VGLIDVV 227 GLID V Sbjct: 186 YGLIDRV 192 >gi|260903025|ref|ZP_05911420.1| serine protease [Vibrio parahaemolyticus AQ4037] gi|308108407|gb|EFO45947.1| serine protease [Vibrio parahaemolyticus AQ4037] Length = 459 Score = 41.5 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 7/218 (3%) Query: 36 PHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ-K 92 V + ++G I +S L IE+ + + +I+ + +PGG A I AI Sbjct: 21 NTVWIVPVKGAIGPANSDYLTREIEQAQIN-GVSLVILKMDTPGGLDSAMRDIIHAITTS 79 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 + AASAG I AS++ AE + +G+ + + G Sbjct: 80 TTPIATWVGPSGSRAASAGTYILLASHVAAMAEATNLGAATPVAIGGAPQAPSSDDGKDK 139 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 ++ S K + P M + V++ + + L +S+ Sbjct: 140 ET--SDENKPNAEKSGDQVPAKTAMEKKVINDAKAYIKGLAKLHDRNAQWAEKAVSEAAS 197 Query: 213 WTGAEAKKVGLIDVVGGQ-EEVWQSLYALGVDQSIRKI 249 EA ++ +IDV+ EE+ ++ V + + Sbjct: 198 LDAEEALELNVIDVIANSPEELVTAINGKSVKVNNLPV 235 >gi|255261268|ref|ZP_05340610.1| Clp protease [Thalassiobium sp. R2A62] gi|255103603|gb|EET46277.1| Clp protease [Thalassiobium sp. R2A62] Length = 209 Score = 41.5 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 23/191 (12%), Positives = 55/191 (28%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + + ++SPGG +G +I+ +Q +K + Sbjct: 37 IIFLNGPVHDGMSQLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + S V Y Sbjct: 97 STLVIGQAASMGSLLLTAGEKGMRFSLPNSRVMVHQPSGGYQGQ---------------- 140 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + K L + Sbjct: 141 --------------ATDIMIHAAETQKLKDRLNSIYVRHTGQTLKKVEAALERDNFMSAE 186 Query: 217 EAKKVGLIDVV 227 +AK GLID + Sbjct: 187 DAKDWGLIDEI 197 >gi|219681825|ref|YP_002468211.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682380|ref|YP_002468764.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471527|ref|ZP_05635526.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219622113|gb|ACL30269.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624668|gb|ACL30823.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086200|gb|ADP66282.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086777|gb|ADP66858.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087365|gb|ADP67445.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087863|gb|ADP67942.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 208 Score = 41.5 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 5/159 (3%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G IED + ++ +I + ++ + + ++SPGG +G +I+ +Q VK Sbjct: 43 IIFITGAIEDNMANNIVAQILFLEAENPEKDIFLYINSPGGIITSGMSIYDTMQFVKPEI 102 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L S A S V L + + + + + Sbjct: 103 STICLGQACSMAALLLTSGAKGKRFCLPNSKVMIHQPLG---GYQGQASDIAIHAREIME 159 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 K ++ +D + + + Sbjct: 160 MKKKLNKLMSFHTGQSIKKINKDTERDCFLSANQSIKYG 198 >gi|68249290|ref|YP_248402.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae 86-028NP] gi|161350016|ref|NP_438872.3| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae Rd KW20] gi|260581528|ref|ZP_05849336.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus influenzae RdAW] gi|1168977|sp|P43867|CLPP_HAEIN RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|81336285|sp|Q4QMK5|CLPP_HAEI8 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|1573716|gb|AAC22371.1| ATP-dependent Clp protease, proteolytic subunit (clpP) [Haemophilus influenzae Rd KW20] gi|68057489|gb|AAX87742.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus influenzae 86-028NP] gi|260091826|gb|EEW75781.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus influenzae RdAW] Length = 193 Score = 41.5 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 60/190 (31%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 VIFLSGEVEDRMANLIVAQLLFLESEDPTKDINIYINSPGGSVTAGMAIYDTMQFIKPDI 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A + V L + + I + Sbjct: 89 RTLCIGQACSMGAFLLAGGTAGKRAALPNARVMIHQPLGGFRGQASDIQIHAQEILKI-- 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + D + + + + + E Sbjct: 147 -----------------KHTLNDRLAFHTGQGIERIEK----------DTDRDNFMSAEE 179 Query: 218 AKKVGLIDVV 227 A+ GL+D V Sbjct: 180 AQAYGLVDEV 189 >gi|295395011|ref|ZP_06805223.1| ATP-dependent Clp protease proteolytic subunit [Brevibacterium mcbrellneri ATCC 49030] gi|294972170|gb|EFG48033.1| ATP-dependent Clp protease proteolytic subunit [Brevibacterium mcbrellneri ATCC 49030] Length = 203 Score = 41.5 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 58/183 (31%), Gaps = 31/183 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 ++ + ++ ++ +D + + ++SPGGS AG AI+ +Q +K + + Sbjct: 40 SNANAICAQLMLLAAEDPEKDIWLYINSPGGSVTAGMAIYDTMQYIKPDVGTVAMGMAAS 99 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 L + A A + + L Sbjct: 100 MGQFLLSAGAKGKRFATPHARILMHQPLGGIGG--------------------------- 132 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDV 226 +++ +++ + +E ++ L +D W T EA G ID Sbjct: 133 ---TATDIKIQAELILHMKRQMAEITAEQTGKTVEQILKDNDRDHWFTADEALDYGFIDK 189 Query: 227 VGG 229 V Sbjct: 190 VVT 192 >gi|291550140|emb|CBL26402.1| Protease subunit of ATP-dependent Clp proteases [Ruminococcus torques L2-14] Length = 252 Score = 41.5 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 57/210 (27%), Gaps = 34/210 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 ++ E ++ I D + +S GGS G AI+ +Q+ + K I Sbjct: 43 TSAKHFKELLDAIPETDEIK---IYFNSNGGSVDQGTAIYNMLQQHGSYKTGIVMGGCH- 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 S + I A + + + + + L ++ S + Sbjct: 99 -SIAFTILQACDKRIMGQGTTAIIHDMWETVTGNAADLRAEADNLDVAMDSCVALFMQRA 157 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 + + +MM + +A + GLID + Sbjct: 158 TVSEEELREMMHKT-----------------------------TTLSPQKALEYGLIDEI 188 Query: 228 GGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 G ++V L K Sbjct: 189 GVAQKVEDPDMKLQEVIKENKALQMELKSR 218 >gi|56695904|ref|YP_166255.1| ATP-dependent Clp protease proteolytic subunit [Ruegeria pomeroyi DSS-3] gi|67460175|sp|Q5LUQ0|CLPP_SILPO RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|56677641|gb|AAV94307.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruegeria pomeroyi DSS-3] Length = 209 Score = 41.5 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 56/191 (29%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G I D ++ ++ + ++ + + ++SPGG +G +I+ +Q +K + Sbjct: 38 IIFINGPIHDGMSHLIVAQLLHLEAENPNKEISIYINSPGGVVTSGLSIYDTMQYIKPK- 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + G G+ F P + + + + Sbjct: 97 -------------CSTLVIGQAASMGSVLLAGGEKGMRFSLPNSRIMVHQPSGGYQG--- 140 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + L + Sbjct: 141 -------------QASDIMIHAAETQKLKDRLYDIYVKHTGQTKKAVEKALDRDNFMSPE 187 Query: 217 EAKKVGLIDVV 227 EAK+ G ID + Sbjct: 188 EAKEWGHIDEI 198 >gi|330719338|ref|ZP_08313938.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc fallax KCTC 3537] Length = 202 Score = 41.5 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 62/193 (32%), Gaps = 31/193 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I ++G++ED + ++ ++ + DS + + ++SPGGS AG AI ++ +K Sbjct: 27 IILVQGEVEDQMATSIVAQLLFLEAQDSDKEISMYINSPGGSVTAGLAIVDTMRFIKAPV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S + + D ++ + Sbjct: 87 TTIVMGLAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAAGGTQQTDMAIIAQQL--- 143 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + +++SE+ P ++ ++ W + Sbjct: 144 -------------------------TKTRERLNKILSENSGQPLEQIRNDTERDYWMSAE 178 Query: 217 EAKKVGLIDVVGG 229 E GLID + Sbjct: 179 ETLDYGLIDGILT 191 >gi|316936711|gb|ADU60350.1| capsid protein [Wolbachia phage WO] gi|316936713|gb|ADU60351.1| capsid protein [Wolbachia phage WO] Length = 135 Score = 41.5 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 49/116 (42%), Gaps = 1/116 (0%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 + +++ +Q V Y F++L++ +R + +K G + G +A ++GL D Sbjct: 2 HMEPMTSESLGSLQKEVGRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 60 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 V E + ++ + + + + + ++ ++S + E ++Q Sbjct: 61 GVTTFFEFINNHRSVSMITNELTEEGYENCRREILEIIRLCNVSKMPEKIGEFIEQ 116 >gi|56707749|ref|YP_169645.1| ATP-dependent Clp protease proteolytic subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|89256249|ref|YP_513611.1| ATP-dependent Clp protease proteolytic subunit [Francisella tularensis subsp. holarctica LVS] gi|110670220|ref|YP_666777.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp. tularensis FSC198] gi|115314706|ref|YP_763429.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp. holarctica OSU18] gi|118497648|ref|YP_898698.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp. novicida U112] gi|134302069|ref|YP_001122038.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp. tularensis WY96-3418] gi|156502310|ref|YP_001428375.1| ATP-dependent Clp protease proteolytic subunit [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010854|ref|ZP_02275785.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella tularensis subsp. holarctica FSC200] gi|187931471|ref|YP_001891455.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella tularensis subsp. mediasiatica FSC147] gi|194323619|ref|ZP_03057395.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella tularensis subsp. novicida FTE] gi|224456819|ref|ZP_03665292.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella tularensis subsp. tularensis MA00-2987] gi|254367562|ref|ZP_04983588.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp. holarctica 257] gi|254369239|ref|ZP_04985251.1| hypothetical protein FTAG_00191 [Francisella tularensis subsp. holarctica FSC022] gi|254370252|ref|ZP_04986258.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp. tularensis FSC033] gi|254373013|ref|ZP_04988502.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp. novicida GA99-3549] gi|254374463|ref|ZP_04989944.1| hypothetical protein FTDG_00632 [Francisella novicida GA99-3548] gi|254874562|ref|ZP_05247272.1| ATP-dependent clp protease proteolytic subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|290953590|ref|ZP_06558211.1| ATP-dependent Clp protease proteolytic subunit [Francisella tularensis subsp. holarctica URFT1] gi|295313091|ref|ZP_06803781.1| ATP-dependent Clp protease proteolytic subunit [Francisella tularensis subsp. holarctica URFT1] gi|67460184|sp|Q5NH47|CLPP_FRATT RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|116243138|sp|Q2A3U1|CLPP_FRATH RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|122325271|sp|Q0BM92|CLPP_FRATO RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|122971012|sp|Q14IJ9|CLPP_FRAT1 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|166201822|sp|A7NBR6|CLPP_FRATF RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|166201823|sp|A0Q6S9|CLPP_FRATN RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|166201824|sp|A4IYB6|CLPP_FRATW RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|226706451|sp|B2SG18|CLPP_FRATM RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|56604241|emb|CAG45257.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp. tularensis SCHU S4] gi|89144080|emb|CAJ79331.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp. holarctica LVS] gi|110320553|emb|CAL08640.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp. tularensis FSC198] gi|115129605|gb|ABI82792.1| endopeptidase Clp [Francisella tularensis subsp. holarctica OSU18] gi|118423554|gb|ABK89944.1| ATP-dependent Clp protease subunit P [Francisella novicida U112] gi|134049846|gb|ABO46917.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella tularensis subsp. tularensis WY96-3418] gi|134253378|gb|EBA52472.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp. holarctica 257] gi|151568496|gb|EDN34150.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp. tularensis FSC033] gi|151570740|gb|EDN36394.1| ATP-dependent Clp protease subunit P [Francisella novicida GA99-3549] gi|151572182|gb|EDN37836.1| hypothetical protein FTDG_00632 [Francisella novicida GA99-3548] gi|156252913|gb|ABU61419.1| ATP-dependent Clp protease, proteolytic subunit [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122189|gb|EDO66329.1| hypothetical protein FTAG_00191 [Francisella tularensis subsp. holarctica FSC022] gi|187712380|gb|ACD30677.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella tularensis subsp. mediasiatica FSC147] gi|194321983|gb|EDX19465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella tularensis subsp. novicida FTE] gi|254840561|gb|EET18997.1| ATP-dependent clp protease proteolytic subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|282158920|gb|ADA78311.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella tularensis subsp. tularensis NE061598] gi|332678356|gb|AEE87485.1| ATP-dependent Clp protease proteolytic subunit [Francisella cf. novicida Fx1] Length = 201 Score = 41.5 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 57/198 (28%), Gaps = 33/198 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++ D +I ++ + +D + ++SPGG AG ++ +Q +K Sbjct: 32 IVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTMQFIKPDV 91 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L A + +S + L + ++ +I +K Sbjct: 92 STICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKD 151 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216 K + + Sbjct: 152 RLNKVL------------------------------AHHTGQDLETIVKDTDRDNFMMAD 181 Query: 217 EAKKVGLIDVVGGQEEVW 234 EAK GLID V E Sbjct: 182 EAKAYGLIDHVIESREAI 199 >gi|170737678|ref|YP_001778938.1| hypothetical protein Bcenmc03_5321 [Burkholderia cenocepacia MC0-3] gi|169819866|gb|ACA94448.1| protein of unknown function DUF107 [Burkholderia cenocepacia MC0-3] Length = 516 Score = 41.5 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 69/208 (33%), Gaps = 6/208 (2%) Query: 40 RIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I + ++ ++R +R+ + A+ + L +PGG + I +AI Sbjct: 59 VIPVNGAIGPASADFIVRSLDRAAREHAPLAI-LQLDTPGGLDTSMRQIIKAILGSPVPV 117 Query: 98 PVITEVHEMAASAGYLISCASNII--VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 A++ ++ + +A T+L + V F P G + Sbjct: 118 AAFVAPGGARAASAGTYIVYASHVAAMAPGTNLGAASPVQFGIGGGAPPGANPGAPRPTG 177 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215 S + + ++ + + + L + + + Sbjct: 178 ASGASGVSDAATMLLTDTQSTEIRKAMQDASAYIRGLAQLRGRNAEWAERAVREAVSLSA 237 Query: 216 AEAKKVGLIDVVG-GQEEVWQSLYALGV 242 EA+ ++D++ ++ + L V Sbjct: 238 NEARAQHVVDLIAQDPADLARQLDGRAV 265 >gi|124026830|ref|YP_001015945.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. NATL1A] gi|123961898|gb|ABM76681.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. NATL1A] Length = 218 Score = 41.5 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 53/179 (29%), Gaps = 31/179 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + L+ ++ + DD + + ++SPGGS AG AI+ +Q+V I + Sbjct: 63 ADALVAQMLFLEADDPEKDIQLYVNSPGGSVTAGLAIYDTMQQVSPDVITICYGLAASMG 122 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L +A S + L ++ Sbjct: 123 AFLLSGGTKGKRLALPNSRIMIHQPLGGAQGQAVEIE----------------------- 159 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227 + + L++E K + EA + GLID V Sbjct: 160 -------IQAKEILYLKETLNSLLAEHTGQNIQKISEDTDRDHFLSPQEAVEYGLIDKV 211 >gi|332523237|ref|ZP_08399489.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Streptococcus porcinus str. Jelinkova 176] gi|332314501|gb|EGJ27486.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Streptococcus porcinus str. Jelinkova 176] Length = 232 Score = 41.5 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 62/205 (30%), Gaps = 37/205 (18%) Query: 33 DNSPHVARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 + V + I GQI D E+ +I + + + ++SPGG +A I+ Sbjct: 8 TDEGEVRTLRIEGQIADETWFGDEVTPQIFKNELTSGTGDITLWINSPGGDVFAAAQIYN 67 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 + + VI +AASA +I+ A + + +++ Sbjct: 68 MLMDYQGDVHVII--DGLAASAASVIAMAGTTVSMSPVAMMMIHN--------------- 110 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 + K + + + K L Sbjct: 111 ---PWTFAQGEAKDMAKVIEMLGE------------IKESIINAYELRTGLSRTKISHLM 155 Query: 209 DGRIW-TGAEAKKVGLIDVVGGQEE 232 D W +A ++G D V ++E Sbjct: 156 DSESWFNAKKAVELGFADKVLFEKE 180 >gi|241895065|ref|ZP_04782361.1| ATP-dependent Clp protease proteolytic subunit [Weissella paramesenteroides ATCC 33313] gi|241871783|gb|EER75534.1| ATP-dependent Clp protease proteolytic subunit [Weissella paramesenteroides ATCC 33313] Length = 197 Score = 41.5 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 26/194 (13%), Positives = 61/194 (31%), Gaps = 33/194 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+IE + +I ++ + D + + ++SPGG AG AI+ + + Sbjct: 29 IIMVNGEIESQMATAIIAQLLFLDAQDPDKDIYMYINSPGGEVNAGMAIYDTMNFISADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 IT + ++ S A S + + Sbjct: 89 QTITIGLAASMASVLASSGAKGKRFILPNSQFMIHQPSGGAQGQQTEIAIAAEE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 + + ++++++ P+++ ++ W Sbjct: 143 ------------------------ILKTRKKLNQILADNTGKPFEEVEKDTERDHWLDAE 178 Query: 217 EAKKVGLIDVVGGQ 230 E+ + GLID + Sbjct: 179 ESLEYGLIDKIMTS 192 >gi|315639062|ref|ZP_07894230.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter upsaliensis JV21] gi|315480838|gb|EFU71474.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter upsaliensis JV21] Length = 194 Score = 41.5 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I D ++ ++ + +D + + ++SPGG +G +I+ + +K Sbjct: 28 IVMLSGEINDDVASSIVAQLLFLEAEDPQKDIYLYINSPGGVITSGFSIYDTMNYIKPDV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A A S + L ++ Sbjct: 88 CTICIGQAASMGAFLLSCGAKQKRFALPNSRIMIHQPLGGARGQATDIE----------- 136 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +++++ N K ++ + + Sbjct: 137 -------------------IQAKEILRLKTILNEILAQNTNQKIAKITKDTERDFFMSAV 177 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 178 EAKEYGLIDKV 188 >gi|316936719|gb|ADU60354.1| capsid protein [Wolbachia phage WO] Length = 132 Score = 41.5 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 + +++ +Q VD Y FV+L++ +R + +K G + G +A ++GL D Sbjct: 2 HMEPMTSESLGSLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 60 Query: 226 VVGGQEEVWQ 235 V E Sbjct: 61 GVTTFFEFIN 70 >gi|24373360|ref|NP_717403.1| ATP-dependent Clp protease proteolytic subunit [Shewanella oneidensis MR-1] gi|60389791|sp|Q8EG19|CLPP_SHEON RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|24347620|gb|AAN54847.1|AE015623_9 ATP-dependent Clp protease, proteolytic subunit [Shewanella oneidensis MR-1] Length = 202 Score = 41.5 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 50/178 (28%), Gaps = 31/178 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + + + + ++SPGGS AG AI+ +Q +K + + A Sbjct: 52 IVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFL 111 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L S V L + + + + + K Sbjct: 112 LAGGEKGKRFCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILGIKNKLNQML------ 162 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229 ++ P + + +A + GL+D V Sbjct: 163 ---------------------ADHTGQPLEVIERDTDRDNFMSATQAVEYGLVDAVMT 199 >gi|288905956|ref|YP_003431178.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus gallolyticus UCN34] gi|306831975|ref|ZP_07465130.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|306834099|ref|ZP_07467219.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus bovis ATCC 700338] gi|325978922|ref|YP_004288638.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732682|emb|CBI14254.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus gallolyticus UCN34] gi|304423672|gb|EFM26818.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus bovis ATCC 700338] gi|304425901|gb|EFM29018.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178850|emb|CBZ48894.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 196 Score = 41.5 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 59/192 (30%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 27 IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + + Sbjct: 87 QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + ++++++ +K ++ W + Sbjct: 145 --------------------------KTRQNLEQILADNSGQTLEKVHADAERDNWMSAQ 178 Query: 217 EAKKVGLIDVVG 228 E + G ID + Sbjct: 179 ETLEYGFIDEIM 190 >gi|153007825|ref|YP_001369040.1| ATP-dependent Clp protease proteolytic subunit [Ochrobactrum anthropi ATCC 49188] gi|151559713|gb|ABS13211.1| Endopeptidase Clp [Ochrobactrum anthropi ATCC 49188] Length = 202 Score = 41.5 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 63/197 (31%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D+ + ++ + ++S + + ++SPGG +G AI+ ++ V+ Sbjct: 33 IIFLNGEVNDTVSALICAQLLFLEAENSKQPINLYINSPGGVVTSGLAIYDTMRYVRAPV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + S+ + + + P + L + + Sbjct: 93 HTLC--------------------MGTARSMGSFLLMAGE-PGHRAALPNANLLVHQPSG 131 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 F + RL +E Y++ L T Sbjct: 132 GFQGQASDIFIHAEEAQR---------TKRLMTRLYAEHCGRTYEEVERALDRDNFMTAE 182 Query: 217 EAKKVGLIDVVGGQEEV 233 + GLID + + EV Sbjct: 183 AGLEWGLIDRILERREV 199 >gi|316936717|gb|ADU60353.1| capsid protein [Wolbachia phage WO] Length = 132 Score = 41.5 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 + +++ +Q VD Y F++L++ +R + +K G + G +A ++GL D Sbjct: 2 HMEPMTSESLGSLQKEVDRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 60 Query: 226 VVGGQEEVWQ 235 V E Sbjct: 61 GVTTFFEFIN 70 >gi|304319808|ref|YP_003853451.1| Protease subunit of ATP-dependent Clp protease [Parvularcula bermudensis HTCC2503] gi|303298711|gb|ADM08310.1| Protease subunit of ATP-dependent Clp protease [Parvularcula bermudensis HTCC2503] Length = 210 Score = 41.5 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ D ++ ++ + D+ + ++SPGGS AG A++ ++ ++ + Sbjct: 38 IIFLSGQVHDQVSTLIVAQLLFLEADNPKKDIAFYINSPGGSVTAGLAMYDTMRYIRPQI 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + +AAS G L+ A + + I+ Sbjct: 98 STMCVG--LAASMGSLLLTAGDKGMR-----FSLPNSRIMVHQPSAGFQGQASDIE---- 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + E Y+ D + T Sbjct: 147 -------------------RHARDIIQTKKRLNEIYVEHTGQDYETIERTLDRDTFMTPE 187 Query: 217 EAKKVGLIDVV 227 +A GLID V Sbjct: 188 DALDFGLIDQV 198 >gi|262174040|ref|ZP_06041716.1| prophage Clp protease-like protein [Vibrio mimicus MB-451] gi|261890220|gb|EEY36208.1| prophage Clp protease-like protein [Vibrio mimicus MB-451] Length = 677 Score = 41.5 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 56/199 (28%), Gaps = 34/199 (17%) Query: 41 IAIRGQIEDSQELIERI-ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV 99 I I +I + + +++ + SPGG + G I+ + + V Sbjct: 26 IYIYDEIGGWGITARQFANDLKSRGDVRNIVLRIHSPGGDVFEGMVIYNLLNQHPAYITV 85 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 G S AS I + + ++ + + ++ Sbjct: 86 YI--------DGLAASMASVIAMVGDVVIIPMNAAIMIH------------KPWGIQGGD 125 Query: 160 MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GAEA 218 ++ V ++ ++ L D W G EA Sbjct: 126 ADDMRRYADLLDQVE------------DSLVSAYTKKTGKTVEEIKQLLDAETWMFGQEA 173 Query: 219 KKVGLIDVVGGQEEVWQSL 237 ++G D+V + SL Sbjct: 174 VELGFADMVAEPLQAAASL 192 >gi|195941431|ref|ZP_03086813.1| ATP-dependent Clp protease proteolytic component (clpP-1) [Borrelia burgdorferi 80a] gi|218249848|ref|YP_002375116.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia burgdorferi ZS7] gi|223889055|ref|ZP_03623645.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia burgdorferi 64b] gi|224532428|ref|ZP_03673055.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia burgdorferi WI91-23] gi|225549547|ref|ZP_03770513.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia burgdorferi 118a] gi|226321916|ref|ZP_03797442.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia burgdorferi Bol26] gi|218165036|gb|ACK75097.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia burgdorferi ZS7] gi|223885481|gb|EEF56581.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia burgdorferi 64b] gi|224512638|gb|EEF83012.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia burgdorferi WI91-23] gi|225369824|gb|EEG99271.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia burgdorferi 118a] gi|226233105|gb|EEH31858.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia burgdorferi Bol26] gi|312147788|gb|ADQ30447.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia burgdorferi JD1] gi|312149314|gb|ADQ29385.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia burgdorferi N40] Length = 194 Score = 41.5 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + +I ++ + +DS+ + + L+SPGGS AG AI+ +Q +K Sbjct: 30 IIFLSGEINDPKADTVIAQLLFLESEDSSKDIYLYLNSPGGSITAGLAIYDTMQYIKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 I + A L A + S + Sbjct: 90 RTICIGQAASMGAFLLAGGAKGKRESLTYSRIMIHQPWG 128 >gi|104781013|ref|YP_607511.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas entomophila L48] gi|122403881|sp|Q1ICA8|CLPP_PSEE4 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|95110000|emb|CAK14705.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas entomophila L48] Length = 213 Score = 41.5 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 45 VIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A+ S V L + ++ I ++ Sbjct: 105 STICIGQACSMGAFLLAAGAAGKRHCLPNSRVMIHQPLGGFQGQATDIEIHAQEILNI-- 162 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 L++ + + A Sbjct: 163 ----------------------------KARLNELLAHHTGQSLETIKRDTERDNFMSAA 194 Query: 217 EAKKVGLIDVV 227 A + GLID V Sbjct: 195 RAAEYGLIDSV 205 >gi|116747913|ref|YP_844600.1| hypothetical protein Sfum_0465 [Syntrophobacter fumaroxidans MPOB] gi|116696977|gb|ABK16165.1| Nodulation efficiency protein NfeD [Syntrophobacter fumaroxidans MPOB] Length = 451 Score = 41.5 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 66/227 (29%), Gaps = 33/227 (14%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISRDDSATALIVSLSS 75 + + + + S HV + I+ I ++ I S +D A L++ L + Sbjct: 28 FLVVGALVLFPFNGCIAGSDHVNIVEIQDTINPGVEDFIRYAVATSEEDGAQFLVILLDT 87 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 PGG + I +AI K V A++ + A+ I A Sbjct: 88 PGGLLTSTRGIAQAILNAKVPIVVYVYPSGAQAASAGVFITAAADIAAMAPG-------- 139 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 +G + + +N + S Sbjct: 140 ----------TNIGAAHPVMGGGENVPSTMDEKVLNDTLAFSRSIAAQRGRNAEWLEQSI 189 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 R++ T EA K +ID+V +++ + L Sbjct: 190 RRSVSA------------TAEEAFKENVIDLVA--DDLPALMKKLDG 222 >gi|119384010|ref|YP_915066.1| endopeptidase Clp [Paracoccus denitrificans PD1222] gi|119373777|gb|ABL69370.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paracoccus denitrificans PD1222] Length = 209 Score = 41.5 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D + ++ + ++ + + ++SPGG +G +I+ +Q +K R Sbjct: 38 IIFLSGPVHDGMATLISAQLLFLEAENPTKDISMYINSPGGVVTSGLSIYDTMQYIKPR- 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + +V + + +GS+ + P + L V + Sbjct: 97 --------------------VSTLVVGQAASMGSLLLCAGQPGQRFSLPNSRVMVHQPSG 136 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + ++ L R + Sbjct: 137 GFQGQATDILIHARETEK---------LKRRLNEIYVKHTGRTLEEVEQALERDRFMSPE 187 Query: 217 EAKKVGLIDVV 227 EAK+ GLID + Sbjct: 188 EAKEWGLIDEI 198 >gi|227821606|ref|YP_002825576.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium fredii NGR234] gi|227340605|gb|ACP24823.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium fredii NGR234] Length = 210 Score = 41.5 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 60/199 (30%), Gaps = 33/199 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + + ++ + ++ + + ++SPGG AG AI+ +Q +K Sbjct: 37 IIFLTGPVEDHMATLVCAQLLFLEAENPKKEIALYINSPGGVVTAGMAIYDTMQFIKPAV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + ++ A + + Sbjct: 97 STLCIGQAASMGSLLLAAGHKDMRFATPNARIMVHQPSG--------------------- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + V + R Y++ L + Sbjct: 136 -------GFQGQASDIERHARDILKMKRRLNEVYVRHCGR--TYEEVEQTLDRDHFMSSD 186 Query: 217 EAKKVGLIDVVGGQEEVWQ 235 EA GLID V E + Sbjct: 187 EALDWGLIDKVITSREAIE 205 >gi|218461627|ref|ZP_03501718.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli Kim 5] Length = 194 Score = 41.5 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 65/196 (33%), Gaps = 38/196 (19%) Query: 41 IAIRGQIED--SQELIERI--ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 I I G I +Q++ ++ + DD + ++SPGG +G++I ++ +K + Sbjct: 29 IFIYGPINQELAQKVCSQLVALAAASDDDIR---IYVNSPGGHVESGDSIHDMVKFIKPK 85 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 +I +A A ++ + + + ++ Sbjct: 86 VWMIGTGWVASAGALIYVAAPKEQRLCLPNTRFLLHQPSGGTRGMASDIE---------- 135 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215 + + ++++E+ P DK +D W + Sbjct: 136 --------------------IQAREIIKMNERLNKIMAEATGQPLDKIAKDTDRDYWLSA 175 Query: 216 AEAKKVGLIDVVGGQE 231 EAK GL+ + + Sbjct: 176 EEAKDYGLVSRIVTSQ 191 >gi|117921102|ref|YP_870294.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp. ANA-3] gi|166214711|sp|A0KYL9|CLPP_SHESA RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|117613434|gb|ABK48888.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp. ANA-3] Length = 202 Score = 41.5 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 50/178 (28%), Gaps = 31/178 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + + + + ++SPGGS AG AI+ +Q +K + + A Sbjct: 52 IVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFL 111 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L S V L + + + + + K Sbjct: 112 LAGGEKGKRFCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILGIKHKLNLML------ 162 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229 SE P + + +A + GL+D V Sbjct: 163 ---------------------SEHTGQPLEVIERDTDRDNFMSATQAVEYGLVDAVMT 199 >gi|125718530|ref|YP_001035663.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus sanguinis SK36] gi|166214716|sp|A3CPK8|CLPP_STRSV RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|125498447|gb|ABN45113.1| ATP-dependent Clp protease, proteolytic subunit, putative [Streptococcus sanguinis SK36] Length = 196 Score = 41.5 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 61/192 (31%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 27 IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D V+ + Sbjct: 87 QTIVMGVAASMGTIIASSGAKGKRFMLPNAEYLIHQPMGGAGSGTQQTDMAIVAEHLL-- 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + ++++E+ ++ ++ W + Sbjct: 145 --------------------------RTRNTLEKILAENSGKSVEQIHKDAERDYWMSAQ 178 Query: 217 EAKKVGLIDVVG 228 E + G ID + Sbjct: 179 ETLEYGFIDEIM 190 >gi|310643050|ref|YP_003947808.1| protein [Paenibacillus polymyxa SC2] gi|309248000|gb|ADO57567.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2] Length = 455 Score = 41.5 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 70/236 (29%), Gaps = 21/236 (8%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISR 62 K I ++ V L + +S S+ + V I + +IE + +ER + Sbjct: 9 SRKLIFLTLWIMISVLLLPLVYSGSALAQTKGGAVFVIPVDQEIEQGLGKFMERGFAEAV 68 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D A +++ +++PGG E + + I+ Sbjct: 69 DSKAGLILLDINTPGGRVDTAEKLGKLIKDSPIPTVAYI----------------KGEAA 112 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 +A + + S + P L + + P S + + Sbjct: 113 SAGSYIALSANKIAMKPGSIIGAAALVDGRGNAITDPKTIAWWKSSMASAAEAGGRNPDI 172 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE-EVWQSL 237 VS + + T EA K+G D + E EV Q + Sbjct: 173 ARGMVDSKTTVSIPEMNFNKENGQIIS---LTSEEALKLGYADHIASSEQEVIQWM 225 >gi|308798991|ref|XP_003074276.1| COG0515: Serine/threonine protein kinase (ISS) [Ostreococcus tauri] gi|116000447|emb|CAL50127.1| COG0515: Serine/threonine protein kinase (ISS) [Ostreococcus tauri] Length = 742 Score = 41.5 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 58/199 (29%), Gaps = 31/199 (15%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I+D+ + ++ + + + ++SPGGS AG I+ +Q V Sbjct: 571 IVFINGPIDDTASSLAVAQLLFLESASPTAPIWMYVNSPGGSVTAGLGIYDTMQYVSPPI 630 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + ++ L + A + S V + + + + + Sbjct: 631 HTLCVGQASSMASLLLAAGAKGERRSLPNSRVMLHQPSG---GASGQASDIAIHAQEILN 687 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 K N + ++ L + ++ Sbjct: 688 VREKLIHIYMKHTNQEYDKIGMT--------------------------LERDTFMSPSD 721 Query: 218 AKKVGLIDVVGGQEEVWQS 236 A + GLID V Sbjct: 722 ALEFGLIDEVIEHRAAATK 740 >gi|91779015|ref|YP_554223.1| hypothetical protein Bxe_B1082 [Burkholderia xenovorans LB400] gi|91691675|gb|ABE34873.1| putative membrane protein [Burkholderia xenovorans LB400] Length = 546 Score = 41.5 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 3/83 (3%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATAL 69 + + V I + G I + ++ ++R + D+ A Sbjct: 37 LLAFGFASCESTVVDVPLRAAVAPNSVVVIPVNGAISPASADFIVRSLQRAA-DERAQLA 95 Query: 70 IVSLSSPGGSAYAGEAIFRAIQK 92 ++ L +PGG + I +AI Sbjct: 96 VLQLDTPGGLDTSMRQIIKAILA 118 >gi|327462069|gb|EGF08398.1| ATP-dependent Clp protease, protease subunit [Streptococcus sanguinis SK1057] Length = 196 Score = 41.5 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 61/192 (31%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D V+ + Sbjct: 87 QTIVMGVAASMGTVIASSGAKGKRFMLPNAEYLIHQPMGGAGSGTQQTDMAIVAEHLL-- 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + ++++E+ ++ ++ W + Sbjct: 145 --------------------------RTRNTLEKILAENSGKSVEQIHKDAERDYWMSAQ 178 Query: 217 EAKKVGLIDVVG 228 E + G ID + Sbjct: 179 ETLEYGFIDEIM 190 >gi|284990114|ref|YP_003408668.1| endopeptidase Clp [Geodermatophilus obscurus DSM 43160] gi|284063359|gb|ADB74297.1| Endopeptidase Clp [Geodermatophilus obscurus DSM 43160] Length = 208 Score = 41.5 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 59/181 (32%), Gaps = 31/181 (17%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D + + ++SPGGS + AI+ + V+ + + Sbjct: 47 ASANDVMAQLITLESADPDRDITIYINSPGGSFTSLMAIYDTMMFVRPDIQTVCMGQAAS 106 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + +A S V + L+ I+ V Sbjct: 107 AAAVLLAAGTPGKRLALPYSRVLIHQPSGEAGGQVSDLEIHAAEIQRV------------ 154 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226 +++ D+ + +I T EAK+ G++D Sbjct: 155 ------------------RAQMEEILARHTGRSVDQVRADIDRDKILTAEEAKEYGIVDA 196 Query: 227 V 227 V Sbjct: 197 V 197 >gi|34419242|ref|NP_899255.1| ClpP [Vibrio phage KVP40] gi|34332923|gb|AAQ64078.1| ClpP [Vibrio phage KVP40] Length = 239 Score = 41.5 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 47/165 (28%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 I G IE+ + E ++ + + + L++PGG+ A I AI + K + Sbjct: 21 YINGPIEEPNDYEEMLQILHTASETDLVYLHLNTPGGNFAAACQICDAIMQSKAGAVIAC 80 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 E+ ++ + + V+ + + Q + L + + + Sbjct: 81 AEGEVCSAGTMIFLACNGWHVSPFATFMFHTSSGGQIGKMPDTLKQAKAHEEHLNRVCGL 140 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 F + + + + Sbjct: 141 LYEPFFDADEIDEIINHNQDLWLTPDEVTERLQLMSKKFESDMKE 185 >gi|216264918|ref|ZP_03436910.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia burgdorferi 156a] gi|225548921|ref|ZP_03769898.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia burgdorferi 94a] gi|226321180|ref|ZP_03796719.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia burgdorferi 29805] gi|215981391|gb|EEC22198.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia burgdorferi 156a] gi|225370524|gb|EEG99960.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia burgdorferi 94a] gi|226233413|gb|EEH32155.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia burgdorferi 29805] Length = 194 Score = 41.5 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + +I ++ + +DS+ + + L+SPGGS AG AI+ +Q +K Sbjct: 30 IIFLSGEINDPKADTVIAQLLFLESEDSSKDIYLYLNSPGGSITAGLAIYDTMQYIKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 I + A L A + S + Sbjct: 90 RTICIGQAASMGAFLLAGGAKGKRESLTYSRIMIHQPWG 128 >gi|90962143|ref|YP_536059.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus salivarius UCC118] gi|227891166|ref|ZP_04008971.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus salivarius ATCC 11741] gi|301301246|ref|ZP_07207401.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus salivarius ACS-116-V-Col5a] gi|116243146|sp|Q1WTA8|CLPP_LACS1 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|90821337|gb|ABD99976.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus salivarius UCC118] gi|227867040|gb|EEJ74461.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus salivarius ATCC 11741] gi|300214827|gb|ADJ79243.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) [Lactobacillus salivarius CECT 5713] gi|300851122|gb|EFK78851.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus salivarius ACS-116-V-Col5a] Length = 197 Score = 41.5 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 58/192 (30%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D +I ++ + DS + + ++SPGGS AG AI+ + V Sbjct: 29 IIMVSGEVNDDMANAIIAQLLFLDAQDSEKDIYMYINSPGGSVSAGLAIYDTMNFVNADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ + A S + L Sbjct: 89 QTIVMGMAASMASVLATAGTKGKRFALPNSEIMIHQPLGGAQGQST-------------- 134 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 +Q+ + + + +++++ + T Sbjct: 135 ----------------EIQIAAEHILKTRKLINQILADGSGQDIETINKDTERDNFMTAQ 178 Query: 217 EAKKVGLIDVVG 228 +A GLID + Sbjct: 179 QAVDYGLIDGIM 190 >gi|56964790|ref|YP_176521.1| ATP-dependent Clp protease proteolytic subunit [Bacillus clausii KSM-K16] gi|67460456|sp|Q5WDK0|CLPP2_BACSK RecName: Full=ATP-dependent Clp protease proteolytic subunit 2; AltName: Full=Endopeptidase Clp 2 gi|56911033|dbj|BAD65560.1| ATP-dependent Clp protease proteolytic subunit [Bacillus clausii KSM-K16] Length = 195 Score = 41.5 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 31/179 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + ++ ++ + +D + + ++SPGGS AG AI+ +Q +K I + Sbjct: 41 ANSIVAQMLFLQAEDPEKDISLYINSPGGSITAGMAIYDTMQFIKPDVSTICIGMAASMG 100 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L + A +A S V L ++ Sbjct: 101 AFLLTAGAKGKRMALPNSEVMIHQPLGGMQGQAADMEIHARR------------------ 142 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227 + ++++E PY++ T +AK+ GLID V Sbjct: 143 ------------IIQMREKLNQIMAERSGQPYERIARDTDRDNFMTAEQAKEYGLIDKV 189 >gi|261346364|ref|ZP_05974008.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Providencia rustigianii DSM 4541] gi|282565678|gb|EFB71213.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Providencia rustigianii DSM 4541] Length = 206 Score = 41.5 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + S V L Y ++ Sbjct: 102 STICMGQACSMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAQE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + L++ ++ R + Sbjct: 156 ------------------------ILKVKSRMNELMAHHTGKSIEEISRDTERDRFLSAN 191 Query: 217 EAKKVGLIDVV 227 EAK+ GL+D + Sbjct: 192 EAKEYGLVDHI 202 >gi|18976612|ref|NP_577969.1| hypothetical protein PF0240 [Pyrococcus furiosus DSM 3638] gi|18892179|gb|AAL80364.1| hypothetical protein PF0240 [Pyrococcus furiosus DSM 3638] Length = 280 Score = 41.1 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 67/181 (37%), Gaps = 12/181 (6%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+E++ I +D +I +PGG A I +A++ VI + M Sbjct: 73 IEDSEEVLRAIRMAPKDKPIDLII---HTPGGLVLAATQIAKALKDHPAETRVIVPHYAM 129 Query: 107 AASAGYLISCASNIIVAAETSLVGSIG-VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 + G LI+ A++ I+ +++G + L QYP + V + Sbjct: 130 SG--GTLIALAADKIIMDPHAVLGPVDPQLGQYPAPSIIKAVEQKGAEKVDDQTLILADV 187 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL-I 224 + + + D R +++ + T A+++GL + Sbjct: 188 AKKAIKQVQDFLYDLLKDKYGEEKARELAQ-----ILTEGRWTHDYPITVEHARELGLEV 242 Query: 225 D 225 D Sbjct: 243 D 243 >gi|18310375|ref|NP_562309.1| ATP-dependent Clp protease proteolytic subunit [Clostridium perfringens str. 13] gi|110799833|ref|YP_696088.1| ATP-dependent Clp protease proteolytic subunit [Clostridium perfringens ATCC 13124] gi|110803073|ref|YP_698704.1| ATP-dependent Clp protease proteolytic subunit [Clostridium perfringens SM101] gi|168207806|ref|ZP_02633811.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium perfringens E str. JGS1987] gi|168212102|ref|ZP_02637727.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium perfringens B str. ATCC 3626] gi|168215325|ref|ZP_02640950.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium perfringens CPE str. F4969] gi|168217824|ref|ZP_02643449.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium perfringens NCTC 8239] gi|169342288|ref|ZP_02863366.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium perfringens C str. JGS1495] gi|182627116|ref|ZP_02954834.1| CAAX amino terminal protease family protein [Clostridium perfringens D str. JGS1721] gi|21759067|sp|Q8XKK1|CLPP_CLOPE RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|123146116|sp|Q0ST53|CLPP_CLOPS RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|123148745|sp|Q0TQK2|CLPP_CLOP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|18145055|dbj|BAB81099.1| ATP-dependent Clp protease proteolytic subunit [Clostridium perfringens str. 13] gi|110674480|gb|ABG83467.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium perfringens ATCC 13124] gi|110683574|gb|ABG86944.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium perfringens SM101] gi|169299615|gb|EDS81674.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium perfringens C str. JGS1495] gi|170660863|gb|EDT13546.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium perfringens E str. JGS1987] gi|170709986|gb|EDT22168.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium perfringens B str. ATCC 3626] gi|170713287|gb|EDT25469.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium perfringens CPE str. F4969] gi|177907505|gb|EDT70163.1| CAAX amino terminal protease family protein [Clostridium perfringens D str. JGS1721] gi|182380151|gb|EDT77630.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium perfringens NCTC 8239] Length = 194 Score = 41.1 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 66/191 (34%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D ++ ++ + +D + + ++SPGGS +G AI+ +Q +K Sbjct: 30 IIMLSGEVNDVTANLVVAQLLFLESEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S A A + + L + +D I + Sbjct: 90 STICIGMAASMGAFLLSSGAKGKRFALPNAEIMIHQPLGGFQGQATDIDIHAKRILKI-- 147 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 +++SE+ N P +K + + Sbjct: 148 ----------------------------KDKLNQILSENTNQPLEKIKVDVERDYFMEAS 179 Query: 217 EAKKVGLIDVV 227 EA + GLID V Sbjct: 180 EAVEYGLIDKV 190 >gi|121612255|ref|YP_999911.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|167004871|ref|ZP_02270629.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|166201812|sp|A1VXS0|CLPP_CAMJJ RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|87250345|gb|EAQ73303.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter jejuni subsp. jejuni 81-176] Length = 194 Score = 41.1 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + ++ ++ + +D + + ++SPGG +G +I+ + +K Sbjct: 28 IIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A A S + L ++ Sbjct: 88 CTICIGQAASMGAFLLSCGAEGKRFALPNSRIMIHQPLGGARGQATDIE----------- 136 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 + + +++++ K ++ + Sbjct: 137 -------------------IQAKEILRLKTILNDILAKNTKQKVAKIAKDTERDFFMSTQ 177 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 178 EAKEYGLIDKV 188 >gi|310659088|ref|YP_003936809.1| membrane bound hydrolase [Clostridium sticklandii DSM 519] gi|308825866|emb|CBH21904.1| putative membrane bound hydrolase [Clostridium sticklandii] Length = 427 Score = 41.1 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 3/87 (3%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSL 73 L+ ++ S S +V I I G++ + E IE + +A ++ + Sbjct: 4 ILLIFALMLSIIPSLSFGASDNVYVIEISGEVNPGMLNYVRENIEDA-NNKNADLILFEV 62 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVI 100 + GG + E I + I K K + Sbjct: 63 DTLGGRIDSAEKISQEILKSKVKTASY 89 >gi|119512063|ref|ZP_01631157.1| ATP-dependent Clp protease proteolytic subunit [Nodularia spumigena CCY9414] gi|119463289|gb|EAW44232.1| ATP-dependent Clp protease proteolytic subunit [Nodularia spumigena CCY9414] Length = 197 Score = 41.1 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 60/187 (32%), Gaps = 33/187 (17%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 + +I + ++I + + DD + + ++SPGG +G AIF +Q +K+ I Sbjct: 38 DVDDEIAN--QIIAVMLYLDSDDPGKDIYLYINSPGGMVTSGMAIFDTMQHIKSDVVTIC 95 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + + L + +A S + ++ I ++ Sbjct: 96 VGLAASMGSFLLAAGTKGKRMALPHSRIMIHQPSGGTRGQASDIEIEAREILRIRH---- 151 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220 + +E K D + + AEAK+ Sbjct: 152 --------------------------QLNGIYAEKTGQDISKIEKDMDRDFFMSAAEAKE 185 Query: 221 VGLIDVV 227 GLID V Sbjct: 186 YGLIDRV 192 >gi|316936725|gb|ADU60357.1| capsid protein [Wolbachia phage WO] Length = 135 Score = 41.1 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 + +++ +Q VD Y F++L++ +R + +K G + G +A ++GL D Sbjct: 2 HMEPMTSESLGSLQKEVDRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 60 Query: 226 VVGGQEEVWQ 235 V E Sbjct: 61 GVTTFFEFIN 70 >gi|298243372|ref|ZP_06967179.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963] gi|297556426|gb|EFH90290.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963] Length = 215 Score = 41.1 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 67/191 (35%), Gaps = 31/191 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I I+D + + I + + +DS+ + + L+SPGGS AG AI+ +Q +K Sbjct: 50 IILIGKPIDDMVAYQTIMLLLYLEHEDSSQDISLYLNSPGGSVTAGLAIYDTMQYIKPDV 109 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + M+ ++ L A + S + L D + + + Sbjct: 110 STVCVGMAMSMASVLLAGGAKGKRFSLPNSTILIHQPLISGEIAGQASDIEIEAREII-- 167 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + L+++ P ++ SD + T Sbjct: 168 --------------------------RTRSELNELLAKHTGQPVERIAQDSDRDNYMTAH 201 Query: 217 EAKKVGLIDVV 227 +A + GLID V Sbjct: 202 QAVEYGLIDEV 212 >gi|189485256|ref|YP_001956197.1| ATP-dependent Clp protease protease subunit P [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287215|dbj|BAG13736.1| ATP-dependent Clp protease protease subunit P [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 203 Score = 41.1 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 30/187 (16%) Query: 44 RGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 G + LI ++ + +D + + ++SPGG AG A++ +Q +K+ I Sbjct: 38 DGAVTTDSANVLIAQLLYLDSEDQGKDISLYINSPGGMVSAGLAVYDTMQFIKSPITTIC 97 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 M+ A L + A S + L + + + + K + S+ K Sbjct: 98 MGMAMSFGAVLLAAGTKGKRYALTHSRIMIHQPLIYGGGLSGTVSDIDIEAKELVSTKQK 157 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKK 220 +++E ++ + EAK+ Sbjct: 158 ---------------------------LSGIIAEHTGKTSERVLKDTDRNCYMSAQEAKE 190 Query: 221 VGLIDVV 227 GLID V Sbjct: 191 YGLIDEV 197 >gi|152995749|ref|YP_001340584.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinomonas sp. MWYL1] gi|254763795|sp|A6VW20|CLPP_MARMS RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|150836673|gb|ABR70649.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinomonas sp. MWYL1] Length = 210 Score = 41.1 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 44 VIFLVGQVEDHMANLVVAQLLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 103 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A+ S V L Y ++ I S+K Sbjct: 104 STMCIGQAASMGALLLTAGAAGKRYCLPNSRVMIHQPLGGYQGQASDIEIHTREILSIKH 163 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 ++S P ++ Sbjct: 164 ------------------------------KLNEIISFHTGKPIEQVALDTDRDNFMNPQ 193 Query: 217 EAKKVGLIDVV 227 AK GLID + Sbjct: 194 TAKDYGLIDEI 204 >gi|220931192|ref|YP_002508100.1| periplasmic serine protease (ClpP class) [Halothermothrix orenii H 168] gi|219992502|gb|ACL69105.1| periplasmic serine protease (ClpP class) [Halothermothrix orenii H 168] Length = 268 Score = 41.1 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS++++ I S D +++ + +PGG A E I AI+K ++ VI + M Sbjct: 67 IEDSEDILRAIRMTSDDKK---IVIVIHTPGGLVLAAEQIAHAIKKHPSKVTVIVPHYAM 123 >gi|168186116|ref|ZP_02620751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum C str. Eklund] gi|169296133|gb|EDS78266.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum C str. Eklund] Length = 195 Score = 41.1 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 55/180 (30%), Gaps = 31/180 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGGS AG AI+ +Q +K I + A Sbjct: 44 VVAQLLFLEAEDPDKDIYLYINSPGGSITAGMAIYDTMQYIKPDVSTICIGMAASMGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A A S + L + + I +K K Sbjct: 104 LTAGAKGKRFALPNSEIMIHQPLGGFQGQATDIGIHANRILKIKDKLNKIL--------- 154 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQE 231 SE P + + EAK+ GLID V Sbjct: 155 ---------------------SERTGKPLEVIKKDVERDNFMEAEEAKEYGLIDDVITSR 193 >gi|22124934|ref|NP_668357.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis KIM 10] gi|45440623|ref|NP_992162.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis biovar Microtus str. 91001] gi|51595309|ref|YP_069500.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pseudotuberculosis IP 32953] gi|108808643|ref|YP_652559.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis Antiqua] gi|108811098|ref|YP_646865.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis Nepal516] gi|145600052|ref|YP_001164128.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis Pestoides F] gi|149364997|ref|ZP_01887032.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia pestis CA88-4125] gi|153950622|ref|YP_001402052.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pseudotuberculosis IP 31758] gi|162419837|ref|YP_001607420.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis Angola] gi|165926613|ref|ZP_02222445.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia pestis biovar Orientalis str. F1991016] gi|165935884|ref|ZP_02224454.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia pestis biovar Orientalis str. IP275] gi|166010967|ref|ZP_02231865.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia pestis biovar Antiqua str. E1979001] gi|166212961|ref|ZP_02238996.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia pestis biovar Antiqua str. B42003004] gi|167398957|ref|ZP_02304481.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421692|ref|ZP_02313445.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423463|ref|ZP_02315216.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025451|ref|YP_001721956.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pseudotuberculosis YPIII] gi|186894326|ref|YP_001871438.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pseudotuberculosis PB1/+] gi|218930187|ref|YP_002348062.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis CO92] gi|229838761|ref|ZP_04458920.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896085|ref|ZP_04511255.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Yersinia pestis Pestoides A] gi|229899329|ref|ZP_04514472.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Yersinia pestis biovar Orientalis str. India 195] gi|229901327|ref|ZP_04516449.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Yersinia pestis Nepal516] gi|270489513|ref|ZP_06206587.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia pestis KIM D27] gi|294504888|ref|YP_003568950.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis Z176003] gi|21759072|sp|Q8ZC65|CLPP_YERPE RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|60389537|sp|Q66DT4|CLPP_YERPS RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|122980282|sp|Q1CL65|CLPP_YERPN RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|123072666|sp|Q1C4K8|CLPP_YERPA RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|166214723|sp|A4TPE3|CLPP_YERPP RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|167008652|sp|A7FLC4|CLPP_YERP3 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|21957773|gb|AAM84608.1|AE013706_3 ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5 [Yersinia pestis KIM 10] gi|45435480|gb|AAS61039.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia pestis biovar Microtus str. 91001] gi|51588591|emb|CAH20199.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease, heat shock protein F21.5 [Yersinia pseudotuberculosis IP 32953] gi|108774746|gb|ABG17265.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia pestis Nepal516] gi|108780556|gb|ABG14614.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia pestis Antiqua] gi|115348798|emb|CAL21752.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia pestis CO92] gi|145211748|gb|ABP41155.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia pestis Pestoides F] gi|149291410|gb|EDM41484.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia pestis CA88-4125] gi|152962117|gb|ABS49578.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia pseudotuberculosis IP 31758] gi|162352652|gb|ABX86600.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia pestis Angola] gi|165916029|gb|EDR34636.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia pestis biovar Orientalis str. IP275] gi|165921541|gb|EDR38738.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia pestis biovar Orientalis str. F1991016] gi|165989967|gb|EDR42268.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia pestis biovar Antiqua str. E1979001] gi|166205748|gb|EDR50228.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia pestis biovar Antiqua str. B42003004] gi|166960611|gb|EDR56632.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051461|gb|EDR62869.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057633|gb|EDR67379.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751985|gb|ACA69503.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia pseudotuberculosis YPIII] gi|186697352|gb|ACC87981.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia pseudotuberculosis PB1/+] gi|229681256|gb|EEO77350.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Yersinia pestis Nepal516] gi|229687731|gb|EEO79804.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Yersinia pestis biovar Orientalis str. India 195] gi|229695127|gb|EEO85174.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701008|gb|EEO89037.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Yersinia pestis Pestoides A] gi|262362954|gb|ACY59675.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis D106004] gi|262366873|gb|ACY63430.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis D182038] gi|270338017|gb|EFA48794.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia pestis KIM D27] gi|294355347|gb|ADE65688.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis Z176003] gi|320016343|gb|ADV99914.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 207 Score = 41.1 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + + ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 IIFLTGQVEDHMANLITAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + ++ Sbjct: 102 STICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L++ ++ R + Sbjct: 156 ------------------------ILKVKSRMNELMAYHTGKSLEEIERDTERDRFLSAE 191 Query: 217 EAKKVGLIDVVGGQEE 232 ++ + GL+D V + + Sbjct: 192 QSVEYGLVDSVFTRRD 207 >gi|109947464|ref|YP_664692.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter acinonychis str. Sheeba] gi|123066220|sp|Q17XD3|CLPP_HELAH RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|109714685|emb|CAJ99693.1| ATP-dependent clp protease proteolytic subunit [Helicobacter acinonychis str. Sheeba] Length = 195 Score = 41.1 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I DS ++ ++ + +D + + ++SPGG +G +I+ + ++ Sbjct: 29 IVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A + S + L ++ + Sbjct: 89 STICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + +++++ ++ +D + + Sbjct: 143 ------------------------IIRLKGLMNSILAQNSKQSLERIAKDTDRDFYMSAL 178 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 179 EAKEYGLIDKV 189 >gi|57640065|ref|YP_182543.1| hypothetical protein TK0130 [Thermococcus kodakarensis KOD1] gi|57158389|dbj|BAD84319.1| hypothetical protein, conserved, DUF114 family [Thermococcus kodakarensis KOD1] Length = 280 Score = 41.1 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 5/105 (4%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+E++ I +D +I +PGG A I RA+++ VI + M Sbjct: 73 IEDSEEVLRAIRSAPKDKPIDLII---HTPGGLVLAATQIARALKEHPAETRVIVPHYAM 129 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + G LI+ A++ I+ +++G + L + Sbjct: 130 SG--GTLIALAADKIIMDPNAVLGPVDPQLGQYPAPSILRAVEKK 172 >gi|300770662|ref|ZP_07080541.1| probable enoyl-CoA hydratase [Sphingobacterium spiritivorum ATCC 33861] gi|300763138|gb|EFK59955.1| probable enoyl-CoA hydratase [Sphingobacterium spiritivorum ATCC 33861] Length = 255 Score = 41.1 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 32/243 (13%), Positives = 63/243 (25%), Gaps = 36/243 (14%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 EL + I D + +I+ + + + + I M Sbjct: 31 DELTQAILEAEEDPAIEGIILHGKEN---FFTSGLDLITLYQYNEEQMKIFWSRFMTLIH 87 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 ++ + S G + D ++ + Sbjct: 88 TLTSFSKPSVAAISGHSPAGGC-------VLGICCDYRVMARGEFIIGLNEVPVGIVVPP 140 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + +Y + L +G++ +A +VGLID V Sbjct: 141 SIFKLYSFWIGQRLAYQY------------------LLEGKLLNPEKALEVGLIDEVVDP 182 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + + + +RKIK + + K LLE + Q L Sbjct: 183 DRIRTAA--------LRKIKSVTQFEKNSWRSTKQNLRKELLESITQQQEAAIDQVLKQW 234 Query: 291 WNP 293 W P Sbjct: 235 WAP 237 >gi|15594956|ref|NP_212745.1| ATP-dependent Clp protease proteolytic subunit [Borrelia burgdorferi B31] gi|18202051|sp|O51556|CLPP1_BORBU RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; AltName: Full=Endopeptidase Clp 1 gi|2688532|gb|AAC66964.1| ATP-dependent Clp protease proteolytic component (clpP-1) [Borrelia burgdorferi B31] Length = 197 Score = 41.1 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + +I ++ + +DS+ + + L+SPGGS AG AI+ +Q +K Sbjct: 33 IIFLSGEINDPKADTVIAQLLFLESEDSSKDIYLYLNSPGGSITAGLAIYDTMQYIKPDV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 I + A L A + S + Sbjct: 93 RTICIGQAASMGAFLLAGGAKGKRESLTYSRIMIHQPWG 131 >gi|328956747|ref|YP_004374133.1| ATP-dependent Clp protease proteolytic subunit [Carnobacterium sp. 17-4] gi|328673071|gb|AEB29117.1| ATP-dependent Clp protease proteolytic subunit [Carnobacterium sp. 17-4] Length = 197 Score = 41.1 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 33/198 (16%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G ++D +I ++ + DS + + ++SPGGS AG AIF + +K Sbjct: 29 IIMLSGPVDDDLANAVIAQLLFLDAQDSEKDIYIYINSPGGSVTAGLAIFDTMNFIKADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A + + ++ Sbjct: 89 QTIAMGMAASMGSFLLTAGTKGKRYALPNAEIMIHQPSGGSQGQATEIEIAAR------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + ++ +++S+ P + + Sbjct: 142 -----------------------HILNTRERLNKILSDRTGQPIEVIKRDTDRDNYMSAE 178 Query: 217 EAKKVGLIDVVGGQEEVW 234 +AK GLID + Sbjct: 179 DAKAYGLIDEIMENSSAL 196 >gi|327348449|gb|EGE77306.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces dermatitidis ATCC 18188] Length = 222 Score = 41.1 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 49/149 (32%), Gaps = 5/149 (3%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++++ S ++ ++ + D+ + + ++SPGGS AG A++ + + Sbjct: 62 IVCLNGEVDETLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISAPV 121 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV---SIKS 154 I + + L S V Y + ++ Sbjct: 122 STICVGQAASMGSLLLCGGHPGKRYCLPHSSVMVHQPSGGYFGQATDIAIHAKEILRVRR 181 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 + K + ++ M +D Sbjct: 182 QLNEIYKLHLTKEMSLDEIEKWMERDYFM 210 >gi|307266641|ref|ZP_07548171.1| membrane-bound serine protease (ClpP class) [Thermoanaerobacter wiegelii Rt8.B1] gi|306918372|gb|EFN48616.1| membrane-bound serine protease (ClpP class) [Thermoanaerobacter wiegelii Rt8.B1] Length = 204 Score = 41.1 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 65/203 (32%), Gaps = 35/203 (17%) Query: 38 VARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95 V ++I G I + + ++ ++ A+ +++ LS+PGG + I I + + Sbjct: 33 VYVLSIDGPIVPVVADYIESGLQEAEKN-GASCIVIELSTPGGLYSTTQKIVTKI--LNS 89 Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 PV+ V A +A T + S V P + Sbjct: 90 HIPVVVYVSP-----------AGAWAGSAGTFITLSANVAAMAPGSRIGA---------- 128 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWT 214 S ++ Q + + ++E+R + + + +T Sbjct: 129 ---AHPVSMEDDSALSDVQRQKLTHDAAAWIRS----IAENRGRDPKNAEMAVIESKSFT 181 Query: 215 GAEAKKVGLIDVVGG-QEEVWQS 236 EA L+D ++ + Sbjct: 182 DTEALNAHLVDFKATNLNDLLKK 204 >gi|251797042|ref|YP_003011773.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus sp. JDR-2] gi|247544668|gb|ACT01687.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus sp. JDR-2] Length = 194 Score = 41.1 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 65/191 (34%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + I+D + ++ ++ ++ +D + + ++SPGGS AG AI+ +Q +K Sbjct: 30 IVFLGSAIDDQVANSIVAQLLFLAAEDPDKEISLYINSPGGSTTAGFAIYDTMQYIKPEV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L+S A A +S V Sbjct: 90 HTICVGMAASFAAILLLSGAKGKRFALPSSEVMIHQPHGGAQGQ---------------- 133 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + + R+ ++ P +K D + + Sbjct: 134 --------------ASDIAISAKRILDTRARLNRIAADRTGQPLEKIEKDMDRDYFLSAQ 179 Query: 217 EAKKVGLIDVV 227 EA G+ID V Sbjct: 180 EALDYGIIDQV 190 >gi|72383092|ref|YP_292447.1| ATP-dependent Clp protease proteolytic subunit ClpP [Prochlorococcus marinus str. NATL2A] gi|115311351|sp|Q46ID4|CLPP3_PROMT RecName: Full=ATP-dependent Clp protease proteolytic subunit 3; AltName: Full=Endopeptidase Clp 3 gi|72002942|gb|AAZ58744.1| ATP-dependent Clp protease proteolytic subunit ClpP [Prochlorococcus marinus str. NATL2A] Length = 194 Score = 41.1 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 53/179 (29%), Gaps = 31/179 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + L+ ++ + DD + + ++SPGGS AG AI+ +Q+V I + Sbjct: 39 ADALVAQMLFLEADDPEKDIQLYVNSPGGSVTAGLAIYDTMQQVSPDVITICYGLAASMG 98 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L +A S + L ++ Sbjct: 99 AFLLSGGTKGKRLALPNSRIMIHQPLGGAQGQAVEIE----------------------- 135 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227 + + L++E K + EA + GLID V Sbjct: 136 -------IQAKEILYLKETLNSLLAEHTGQNIQKISEDTDRDHFLSPQEAVEYGLIDKV 187 >gi|328470862|gb|EGF41773.1| membrane-bound serine protease [Vibrio parahaemolyticus 10329] Length = 459 Score = 41.1 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 88/249 (35%), Gaps = 18/249 (7%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISR 62 +K+I T + L L + + V + ++G I +S L IE+ Sbjct: 1 MKRIWTWLLPLLLFA-----------GQTLANTVWIVPVKGAIGPANSDYLTREIEQAQI 49 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQ-KVKNRKPVITEVHEMAASAGYLISCASNII 121 + + +I+ + +PGG A I AI + AASAG I AS++ Sbjct: 50 N-GVSLVILKMDTPGGLDSAMRDIIHAITTSTTPIATWVGPSGSRAASAGTYILLASHVA 108 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 AE + +G+ + + +S S K P M + V Sbjct: 109 AMAEATNLGAATPVAIGGAPQAPSSDDDKDNES--SDENKPNAEKSGAQVPAKTAMEKKV 166 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSLYAL 240 ++ + + L +S+ EA ++ +IDV+ EE+ ++ Sbjct: 167 INDAKAYIKGLAKLHDRNAQWAEKAVSEAASLDAEEALELNVIDVIANSPEELVTAINGK 226 Query: 241 GVDQSIRKI 249 V + + Sbjct: 227 SVKVNNLPV 235 >gi|316936715|gb|ADU60352.1| capsid protein [Wolbachia phage WO] Length = 135 Score = 41.1 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 + +++ +Q V Y F++L++ +R + +K G + G +A ++GL D Sbjct: 2 HMEPMTSESLGSLQKEVGRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 60 Query: 226 VVGGQEEVWQ 235 V E Sbjct: 61 GVTTFFEFIN 70 >gi|331211899|ref|XP_003307219.1| ATP-dependent Clp protease proteolytic subunit 2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309297622|gb|EFP74213.1| ATP-dependent Clp protease proteolytic subunit 2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 257 Score = 41.1 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 25/190 (13%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D+ ++ ++ + + + + ++SPGGS AG AI+ +Q V++ Sbjct: 80 VIFVGGEINDADANLIVAQLLYLEAESP-DPIELYINSPGGSVTAGLAIYDTMQYVRSPV 138 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A S + + I +K Sbjct: 139 HTICIGQACSMGSILLGAGAKGFRKALPNSTIMIHQPSGGSSGQASDMAIRANEILRLKK 198 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 ++ + + L + G Sbjct: 199 RLIEIYAKHCGKEDESQTDRCNRFE----------------------QALERDKFMDGES 236 Query: 218 AKKVGLIDVV 227 A+ G+ID V Sbjct: 237 AQAFGIIDQV 246 >gi|114321437|ref|YP_743120.1| ATP-dependent Clp protease proteolytic subunit ClpP [Alkalilimnicola ehrlichii MLHE-1] gi|122311052|sp|Q0A6A7|CLPP_ALHEH RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|114227831|gb|ABI57630.1| ATP-dependent Clp protease proteolytic subunit ClpP [Alkalilimnicola ehrlichii MLHE-1] Length = 214 Score = 41.1 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 26/201 (12%), Positives = 58/201 (28%), Gaps = 33/201 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + ++ ++ + ++ + + ++SPGG+ AG AI+ +Q +K Sbjct: 44 VIFLVGPVEDHMANLIVAQLLFLESENPDKDIHIYINSPGGAVTAGLAIYDTMQFIKPDV 103 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S + L + Sbjct: 104 STVCIGQAASMGALLLTGGTKGKRYALPNSRMMIHQPLGGFQGQ---------------- 147 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 V + + R+++ + + Sbjct: 148 --------------ATDVDIHAREILDMRDRLNRIMAHHTGQDMETIARDTDRDNFMSPD 193 Query: 217 EAKKVGLIDVVGGQEEVWQSL 237 A + GL+D V + Sbjct: 194 TACEYGLVDAVLADRKALDQA 214 >gi|153011350|ref|YP_001372564.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Ochrobactrum anthropi ATCC 49188] gi|151563238|gb|ABS16735.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Ochrobactrum anthropi ATCC 49188] Length = 738 Score = 41.1 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 31/245 (12%), Positives = 74/245 (30%), Gaps = 22/245 (8%) Query: 46 QIEDSQELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVIT 101 +E QEL I+ ++ DD ++++ S G A E +F+ QK K + P Sbjct: 31 TVEAMQELNSIIDAVTADDKIKGVVITSGKDSFSGGADLTMLEGMFKEFQKQKAKDPQGA 90 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + + + + Sbjct: 91 VQTLFDNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARV 138 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221 +P ++ V++ RL ++ D +++ G T AK + Sbjct: 139 VSDAPGVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAM 193 Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 GL+ + +++ ++ L ++ ++ W+ + + L + + Sbjct: 194 GLVTEIAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILR 252 Query: 282 TKVQG 286 + G Sbjct: 253 RETSG 257 >gi|72382719|ref|YP_292074.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus marinus str. NATL2A] gi|124026440|ref|YP_001015555.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus marinus str. NATL1A] gi|115311347|sp|Q46JF7|CLPP2_PROMT RecName: Full=ATP-dependent Clp protease proteolytic subunit 2; AltName: Full=Endopeptidase Clp 2 gi|72002569|gb|AAZ58371.1| ATP-dependent Clp protease proteolytic subunit ClpP [Prochlorococcus marinus str. NATL2A] gi|123961508|gb|ABM76291.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. NATL1A] Length = 200 Score = 41.1 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 65/189 (34%), Gaps = 32/189 (16%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 + I +S L+ ++ + +DS+ + + ++SPGGS AG AI+ ++ VK+ I Sbjct: 38 EVNDGIANS--LVAQMLYLDSEDSSKPIYLYINSPGGSVTAGLAIYDTMKYVKSDLVTIC 95 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + A L + +A S + L + ++ Sbjct: 96 VGLAASMGAFLLSAGTKGKRLALPHSRIMIHQPLGGTAQRQASDIEIEAR---------- 145 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220 + + ++E Y+K +D + + EAK Sbjct: 146 -------------------EILRIKEMLNKSMAEMTGQTYEKIEKDTDRDYFLSAEEAKN 186 Query: 221 VGLIDVVGG 229 GLID V Sbjct: 187 YGLIDRVIT 195 >gi|283797647|ref|ZP_06346800.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium sp. M62/1] gi|291074652|gb|EFE12016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium sp. M62/1] gi|295092868|emb|CBK78975.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium cf. saccharolyticum K10] gi|295114657|emb|CBL35504.1| ATP-dependent Clp protease, proteolytic subunit ClpP [butyrate-producing bacterium SM4/1] Length = 193 Score = 41.1 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 57/181 (31%), Gaps = 31/181 (17%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++ ++ + +D + + ++SPGGS AG AI+ + +K I + Sbjct: 39 VSASLIVAQLLFLESEDPNKDIHLYINSPGGSVTAGMAIYDTMNYIKCDVSTICVGMAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L A +A + V + ++ + +++ + K Sbjct: 99 MGAFLLAGGAKGKRLALPNAEVMIHQPSG---GARGQATEIQIVAENILRTKKKLNEIL- 154 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226 + + PY+ T EA K GLID Sbjct: 155 --------------------------AANTGQPYEVIERDTDRDNYMTAEEALKYGLIDR 188 Query: 227 V 227 V Sbjct: 189 V 189 >gi|119593590|gb|EAW73184.1| chloride channel, calcium activated, family member 4, isoform CRA_a [Homo sapiens] Length = 917 Score = 41.1 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 73/265 (27%), Gaps = 21/265 (7%) Query: 46 QIEDSQELIERIER-----------ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I +S++ I + L++ S G + +A + Sbjct: 275 VISNSEDFKNTIPMVTPPPPPVFSLLKISQRIVCLVLDKSGSMGGKDRLNRMNQAAKHFL 334 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP-YVKPFLDKLGVSIK 153 + M I + + + L YP + + + Sbjct: 335 LQTVENGSWVGMVHFDSTATIVNKLIQIKSSDERNTLMAGLPTYPLGGTSICSGIKYAFQ 394 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW--FVRLVSESRNIPYDKTL--VLSD 209 + + + S + +D V ++ R ++ Sbjct: 395 VIGELHSQLDGSEVLLLTDGEDNTASSCIDEVKQSGAIVHFIALGRAADEAVIEMSKITG 454 Query: 210 GR-IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 G + EA+ GLID G L + + + N W D + Sbjct: 455 GSHFYVSDEAQNNGLIDAFGALTSGNTDLSQKSLQLESKGL---TLNSNAWMNDTVIID- 510 Query: 269 SSLLEDTIPLMKQTKVQGLWAVWNP 293 S++ +DT L+ + ++W+P Sbjct: 511 STVGKDTFFLITWNSLPPSISLWDP 535 >gi|119593591|gb|EAW73185.1| chloride channel, calcium activated, family member 4, isoform CRA_b [Homo sapiens] Length = 918 Score = 41.1 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 73/265 (27%), Gaps = 21/265 (7%) Query: 46 QIEDSQELIERIER-----------ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I +S++ I + L++ S G + +A + Sbjct: 276 VISNSEDFKNTIPMVTPPPPPVFSLLKISQRIVCLVLDKSGSMGGKDRLNRMNQAAKHFL 335 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP-YVKPFLDKLGVSIK 153 + M I + + + L YP + + + Sbjct: 336 LQTVENGSWVGMVHFDSTATIVNKLIQIKSSDERNTLMAGLPTYPLGGTSICSGIKYAFQ 395 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW--FVRLVSESRNIPYDKTL--VLSD 209 + + + S + +D V ++ R ++ Sbjct: 396 VIGELHSQLDGSEVLLLTDGEDNTASSCIDEVKQSGAIVHFIALGRAADEAVIEMSKITG 455 Query: 210 GR-IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 G + EA+ GLID G L + + + N W D + Sbjct: 456 GSHFYVSDEAQNNGLIDAFGALTSGNTDLSQKSLQLESKGL---TLNSNAWMNDTVIID- 511 Query: 269 SSLLEDTIPLMKQTKVQGLWAVWNP 293 S++ +DT L+ + ++W+P Sbjct: 512 STVGKDTFFLITWNSLPPSISLWDP 536 >gi|109731121|gb|AAI13690.1| Chloride channel accessory 4 [Homo sapiens] gi|109731369|gb|AAI13688.1| Chloride channel accessory 4 [Homo sapiens] gi|313883598|gb|ADR83285.1| chloride channel accessory 4 [synthetic construct] Length = 917 Score = 41.1 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 73/265 (27%), Gaps = 21/265 (7%) Query: 46 QIEDSQELIERIER-----------ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I +S++ I + L++ S G + +A + Sbjct: 275 VISNSEDFKNTIPMVTPPPPPVFSLLKISQRIVCLVLDKSGSMGGKDRLNRMNQAAKHFL 334 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP-YVKPFLDKLGVSIK 153 + M I + + + L YP + + + Sbjct: 335 LQTVENGSWVGMVHFDSTATIVNKLIQIKSSDERNTLMAGLPTYPLGGTSICSGIKYAFQ 394 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW--FVRLVSESRNIPYDKTL--VLSD 209 + + + S + +D V ++ R ++ Sbjct: 395 VIGELHSQLDGSEVLLLTDGEDNTASSCIDEVKQSGAIVHFIALGRAADEAVIEMSKITG 454 Query: 210 GR-IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 G + EA+ GLID G L + + + N W D + Sbjct: 455 GSHFYVSDEAQNNGLIDAFGALTSGNTDLSQKSLQLESKGL---TLNSNAWMNDTVIID- 510 Query: 269 SSLLEDTIPLMKQTKVQGLWAVWNP 293 S++ +DT L+ + ++W+P Sbjct: 511 STVGKDTFFLITWNSLPPSISLWDP 535 >gi|150036262|ref|NP_036260.2| calcium-activated chloride channel regulator 4 [Homo sapiens] gi|205831469|sp|Q14CN2|CLCA4_HUMAN RecName: Full=Calcium-activated chloride channel regulator 4; AltName: Full=Calcium-activated chloride channel family member 4; Short=hCLCA4; AltName: Full=Calcium-activated chloride channel protein 2; Short=CaCC-2; Short=hCaCC-2; Contains: RecName: Full=Calcium-activated chloride channel regulator 4, 110 kDa form; Contains: RecName: Full=Calcium-activated chloride channel regulator 4, 30 kDa form; Flags: Precursor gi|37182063|gb|AAQ88834.1| CLCA4 [Homo sapiens] gi|56203696|emb|CAI22170.1| chloride channel, calcium activated, family member 4 [Homo sapiens] Length = 919 Score = 41.1 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 73/265 (27%), Gaps = 21/265 (7%) Query: 46 QIEDSQELIERIER-----------ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I +S++ I + L++ S G + +A + Sbjct: 275 VISNSEDFKNTIPMVTPPPPPVFSLLKISQRIVCLVLDKSGSMGGKDRLNRMNQAAKHFL 334 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP-YVKPFLDKLGVSIK 153 + M I + + + L YP + + + Sbjct: 335 LQTVENGSWVGMVHFDSTATIVNKLIQIKSSDERNTLMAGLPTYPLGGTSICSGIKYAFQ 394 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW--FVRLVSESRNIPYDKTL--VLSD 209 + + + S + +D V ++ R ++ Sbjct: 395 VIGELHSQLDGSEVLLLTDGEDNTASSCIDEVKQSGAIVHFIALGRAADEAVIEMSKITG 454 Query: 210 GR-IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 G + EA+ GLID G L + + + N W D + Sbjct: 455 GSHFYVSDEAQNNGLIDAFGALTSGNTDLSQKSLQLESKGL---TLNSNAWMNDTVIID- 510 Query: 269 SSLLEDTIPLMKQTKVQGLWAVWNP 293 S++ +DT L+ + ++W+P Sbjct: 511 STVGKDTFFLITWNSLPPSISLWDP 535 >gi|160902469|ref|YP_001568050.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Petrotoga mobilis SJ95] gi|160360113|gb|ABX31727.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Petrotoga mobilis SJ95] Length = 205 Score = 41.1 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 58/193 (30%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + I D +I ++ + D + + ++SPGGS +G I+ +Q VK Sbjct: 30 IVFLGTPINDDVANVIIAQLLFLESQDPDKDIFLYINSPGGSVTSGLGIYDTMQYVKPDI 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A + S + Sbjct: 90 STICIGQAASMGAVLLAAGAKGKRYSLPYSRIMIHQPWG--------------------- 128 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +E +Q+ + ++S+ +K ++ + Sbjct: 129 ---------GAEGTAIDIQIHAREILRLKDDLNNILSKHTGQSLEKIEKDTERDFFMNAQ 179 Query: 217 EAKKVGLIDVVGG 229 EA GLID V Sbjct: 180 EALNYGLIDKVIT 192 >gi|70726774|ref|YP_253688.1| hypothetical protein SH1773 [Staphylococcus haemolyticus JCSC1435] gi|68447498|dbj|BAE05082.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 288 Score = 41.1 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 72/231 (31%), Gaps = 39/231 (16%) Query: 30 HVEDNSPHVARIAIRGQIEDSQELIERIE-RISRD--DSAT-ALIVSLSSPGGSAYAGEA 85 + N+ H+ + + G I + L + I + +D D+ +++ L+S GG + G Sbjct: 15 NETKNNKHI--LTLSGTIANLSFLDDTISAKAVKDSLDNVKEDIVIRLNSGGGDVFEGIE 72 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 I+ ++ + N I A++A + II+ +++ + Sbjct: 73 IYNYLKSLSN-HITIEVTALAASAASLVAMAGDKIIIRTGANMMVHEASTMAFGNKSDIQ 131 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 L + + V + + + D+ + Sbjct: 132 KTLNA-------------------------------LTAIDTSIVDIYHDRTGLDRDEIV 160 Query: 206 VLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 L W T EA G D ++ V + + + + + Sbjct: 161 NLITNETWLTADEAINKGFADEKSSRKSVDKQKEGVKNVGNSKYVAKLKEQ 211 >gi|332284416|ref|YP_004416327.1| putative nodulation efficiency protein D [Pusillimonas sp. T7-7] gi|330428369|gb|AEC19703.1| putative nodulation efficiency protein D [Pusillimonas sp. T7-7] Length = 465 Score = 41.1 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 61/202 (30%), Gaps = 13/202 (6%) Query: 30 HVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 +P V + + G I S + +++ + S A+I L +PGG + AI Sbjct: 27 KANAQAPKVTVLQVDGIISPATSDFITRGLQQAVENGSTLAVI-ELDTPGGLDSSMRAII 85 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 R I A++ A+ + + L V + Sbjct: 86 RQILASPIPVASFVSPSGARAASAGTFIL-----YASHIAAMTPASNLGAASPVSIGMPG 140 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 G + + + + + RN + + + Sbjct: 141 AGTETQDDDKGKNEGNKQKSNADTLSSKATNDAAAYIRSLAQL----RGRNADFAE-QAV 195 Query: 208 SDGRIWTGAEAKKVGLIDVVGG 229 + R + EA K G++DVV G Sbjct: 196 LEARSMSAQEALKAGVVDVVAG 217 >gi|260589157|ref|ZP_05855070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Blautia hansenii DSM 20583] gi|331082573|ref|ZP_08331698.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae bacterium 6_1_63FAA] gi|260540577|gb|EEX21146.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Blautia hansenii DSM 20583] gi|330400551|gb|EGG80181.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae bacterium 6_1_63FAA] Length = 193 Score = 41.1 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 52/176 (29%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 + ++ + +D + + ++SPGGS AG I+ +Q +K I + A Sbjct: 44 IAAQLLFLESEDPGKDIHLYINSPGGSVTAGMVIYDTMQYIKCDVSTICMGLAASMGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L A +A + + +D + Sbjct: 104 LAGGAKGKRMALPNAEIMIHQPSGGAQGQATEIDIVAQQ--------------------- 142 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227 + + H +++++ + T EA GLID V Sbjct: 143 ---------ILKTRHKLNSILAQNTGQTLETIARDTERDNYMTAQEAMAYGLIDSV 189 >gi|195384926|ref|XP_002051163.1| GJ13731 [Drosophila virilis] gi|194147620|gb|EDW63318.1| GJ13731 [Drosophila virilis] Length = 254 Score = 41.1 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 60/190 (31%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D S ++ ++ + ++ + + ++SPGG AG AI+ +Q VK Sbjct: 55 IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A + + + + Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGG------------------AQ 156 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 E+ Q+ V + + + + + + T E Sbjct: 157 GQATDILIHAEEIIKIKRQLTNIYVKHAKNNYDEMCAR-----------MERDHFMTPEE 205 Query: 218 AKKVGLIDVV 227 AK +G+ID V Sbjct: 206 AKTLGIIDHV 215 >gi|169334562|ref|ZP_02861755.1| hypothetical protein ANASTE_00965 [Anaerofustis stercorihominis DSM 17244] gi|169259279|gb|EDS73245.1| hypothetical protein ANASTE_00965 [Anaerofustis stercorihominis DSM 17244] Length = 193 Score = 41.1 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D ++ + + +S + + ++SPGGS AG AI+ + +K Sbjct: 29 IIFLSGEINDDVANLVVAEMLFLESQNSEKDIQLYINSPGGSVTAGMAIYDTMNYIKCDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L +A +S + L + Sbjct: 89 STICIGMAASMGAFLLACGEKGKRIALPSSEIMIHQPLGGFQGQSS-------------- 134 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 V++ + + +++S+ +D + + Sbjct: 135 ----------------DVEIHAKRLLKTREDINKILSKRTGKTLKTIEKDTDRDNFMSAK 178 Query: 217 EAKKVGLIDVV 227 EA + GLID V Sbjct: 179 EAMEYGLIDKV 189 >gi|126640549|ref|YP_001083533.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter baumannii ATCC 17978] Length = 155 Score = 41.1 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 55/176 (31%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + ++ + + ++SPGGS AG AI+ +Q +K + A Sbjct: 5 IVAQMLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASMGAFL 64 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A E + V L + ++ I + Sbjct: 65 LNAGAKGKRYCLENARVMIHQPLGGFRGQASDIEIHAREILFI----------------- 107 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227 RL++E YD T AK+ GL+D V Sbjct: 108 -------------KERLNRLMAEHSGQDYDTIARDTDRDNFMTAQAAKEYGLVDQV 150 >gi|321468091|gb|EFX79078.1| hypothetical protein DAPPUDRAFT_231060 [Daphnia pulex] Length = 235 Score = 41.1 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D ++ ++ + + + + + ++SPGGS AG I+ +Q V Sbjct: 53 IICVMGPITDDLSSLVVAQLLFLQSESNKKPVHMYINSPGGSVTAGLGIYDTMQYVLPPI 112 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + ++ L S + + + S + Sbjct: 113 ATWCVGQACSMASLLLASGSPGMRYSLPNSRIMIHQPSGGVQGQ---------------- 156 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 +Q+ + + +L + + + + + Sbjct: 157 --------------ATDIQIQAEEIMKLKKQINQLYGKHTGLQLSVIESNMERDKFMSPV 202 Query: 217 EAKKVGLIDVV 227 EAK+ GLID + Sbjct: 203 EAKEFGLIDKI 213 >gi|257458199|ref|ZP_05623353.1| Clp protease [Treponema vincentii ATCC 35580] gi|257444493|gb|EEV19582.1| Clp protease [Treponema vincentii ATCC 35580] Length = 202 Score = 41.1 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 62/187 (33%), Gaps = 33/187 (17%) Query: 41 IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 I + G++ ++++I ++ + D ++ + V + SPGG AG AIF I+ +K Sbjct: 33 IILSGEVNKELAEKVIRQLLILEADSASKPIYVYIDSPGGDVDAGFAIFDMIRFIKPPVY 92 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 + +A A L++ N + S L V ++ I+ + Sbjct: 93 TVGMGLVASAGALILLAAPKNRRLGLPNSHYLIHQPLSGIKGVATDIEIHAKEIEKI--- 149 Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAE 217 L++E +D W + E Sbjct: 150 ---------------------------RAKINALIAEETGKDVADVAKDTDRDYWLSADE 182 Query: 218 AKKVGLI 224 A GLI Sbjct: 183 AVNYGLI 189 >gi|257428232|ref|ZP_05604630.1| protease [Staphylococcus aureus subsp. aureus 65-1322] gi|258445568|ref|ZP_05693750.1| prophage protease [Staphylococcus aureus A6300] gi|258455562|ref|ZP_05703519.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|282905858|ref|ZP_06313713.1| phage protease [Staphylococcus aureus subsp. aureus Btn1260] gi|257275073|gb|EEV06560.1| protease [Staphylococcus aureus subsp. aureus 65-1322] gi|257855615|gb|EEV78548.1| prophage protease [Staphylococcus aureus A6300] gi|257862250|gb|EEV85021.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|282331150|gb|EFB60664.1| phage protease [Staphylococcus aureus subsp. aureus Btn1260] Length = 257 Score = 41.1 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 70/221 (31%), Gaps = 38/221 (17%) Query: 41 IAIRGQIEDSQELIERI------ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I I G I + + ++ + + V ++S GGS + G AI+ ++ Sbjct: 20 IFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHP 79 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + V +AAS +I+ + + I + S + Sbjct: 80 AKIN--IYVDALAASIASVIAMSGDTIFMHKNSFLMIHN--------------------- 116 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213 + + + + + +++++ ++ + D W Sbjct: 117 --------SWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEQLKQMLDAETWL 168 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 T EA GLID + G E+ S+ + +D Sbjct: 169 TAEEALSFGLIDEILGANEIAASISKEQYKRFENVPEDLKK 209 >gi|332712287|ref|ZP_08432215.1| periplasmic serine protease, ClpP family [Lyngbya majuscula 3L] gi|332349093|gb|EGJ28705.1| periplasmic serine protease, ClpP family [Lyngbya majuscula 3L] Length = 294 Score = 41.1 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 43/248 (17%), Positives = 86/248 (34%), Gaps = 30/248 (12%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVY---------FSWSSHVEDNSPHVAR--------IAI 43 M F ++ L + +L ++ F E+N I++ Sbjct: 1 MNFSFNFFDLFWIFLIISSLQPLWQRRQMQYRRFRALQEFEENRKSRLILLIHRQESISL 60 Query: 44 RGQ-------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 G IEDS++++ I D ++ +PGG A E I RA+ + ++ Sbjct: 61 FGIPVSRYISIEDSEQVLRAIRLTPPDVPIDLIL---HTPGGLVLATEQIARALIRHPSK 117 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI-KSV 155 V V A S G +++ AS+ IV +++G + L + +++ Sbjct: 118 --VTVFVPHYAMSGGTMLALASDEIVMDANAVLGPVDPQLGNTAAASILRVVEQKPLEAI 175 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG 215 + + + ++D + R I + T ++ T Sbjct: 176 DDQTLMMADLASKAIKQVQRFVRTLLLDDIPKQKIDPEHIDRIIDFLTTGQITHDCPITV 235 Query: 216 AEAKKVGL 223 EA ++GL Sbjct: 236 EEASELGL 243 >gi|331090181|ref|ZP_08339069.1| hypothetical protein HMPREF1025_02652 [Lachnospiraceae bacterium 3_1_46FAA] gi|330402127|gb|EGG81699.1| hypothetical protein HMPREF1025_02652 [Lachnospiraceae bacterium 3_1_46FAA] Length = 229 Score = 41.1 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 24/196 (12%), Positives = 69/196 (35%), Gaps = 11/196 (5%) Query: 41 IAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 + + G I + ++ ++ + + + V ++SPGG A I+ + + Sbjct: 5 LFLNGTIAEESWFDDDITPQLFKEELMAGSGDITVWINSPGGDCVAAAQIYNMLMDY--K 62 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV----LFQYPYVKPFLDKLGVSI 152 V ++ +AASA +I+ A ++ + S++ + ++ ++ LG Sbjct: 63 GNVTVKIDGIAASAASVIAMAGTKVLVSPVSMMMIHNPMTVAMGDTAEMQKAIEMLGSVK 122 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 S+ ++ + ++ + R+ + + + Sbjct: 123 DSIINAYEIKTGLSRTRLSHLMDAETWMDAGKAVELGFADEVLKRSEVPEDMETPAVSML 182 Query: 213 WTGAEAKKVGLIDVVG 228 ++ A L+D + Sbjct: 183 YS-KAAVVNSLMDKIA 197 >gi|296159099|ref|ZP_06841926.1| peptidase S14 ClpP [Burkholderia sp. Ch1-1] gi|295890660|gb|EFG70451.1| peptidase S14 ClpP [Burkholderia sp. Ch1-1] Length = 226 Score = 41.1 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 59/193 (30%), Gaps = 44/193 (22%) Query: 41 IAIRGQIED-----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95 I + I Q++I+ ++ A+ + ++SPGG A+ G A+ AIQ+ Sbjct: 27 IYLYDTIGGWYGIAVQDVIKELKDAKG-----AVNLRINSPGGDAFDGRALATAIQQH-- 79 Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 + A L + A+ + A S+ + G + +V Sbjct: 80 --------GNVTAHIDGLAASAATYVALAAKSVNIAEGAFMMVH-----------NAWTV 120 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-T 214 + + + D+ D W T Sbjct: 121 AVGNAAELGDTIAMLQKID------------TSIANDYAAKTGKTLDEVKAWMDAETWFT 168 Query: 215 GAEAKKVGLIDVV 227 EAK GL+D + Sbjct: 169 AQEAKDAGLVDNI 181 >gi|293606121|ref|ZP_06688486.1| enoyl-CoA hydratase/isomerase FadB1x [Achromobacter piechaudii ATCC 43553] gi|292815576|gb|EFF74692.1| enoyl-CoA hydratase/isomerase FadB1x [Achromobacter piechaudii ATCC 43553] Length = 260 Score = 41.1 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 21/209 (10%), Positives = 54/209 (25%), Gaps = 28/209 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 LI +ER + D + A++++ P + + + + Sbjct: 31 DALIAALERANADANVRAVLLASDLP--GRFCAGLDMKKLLASSPTQVHALLSRLYVKLY 88 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + I ++ G + + + + A Sbjct: 89 DAQFNLTKPSISVVSGAVRGGGMTVAISSDMIVAASNATFGYPEIDVGVLPAIHYAHLP- 147 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 +V + R L GR ++ EA +GL+ V + Sbjct: 148 --------------------AIVGKHRAFDL-----LFTGRTFSAQEAHALGLVARVEDE 182 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 ++ + L + + + + + Sbjct: 183 AQLLERARQLAQSLANKPPQVLAMGRRAF 211 >gi|87121308|ref|ZP_01077198.1| putative ATP-dependent Clp protease, proteolytic subunit [Marinomonas sp. MED121] gi|86163465|gb|EAQ64740.1| putative ATP-dependent Clp protease, proteolytic subunit [Marinomonas sp. MED121] Length = 210 Score = 41.1 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 67/197 (34%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 44 VIFLVGQVEDHMANLVVAQLLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 103 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A+ S V L Y ++ I S+K Sbjct: 104 STMCIGQAASMGALLLTAGAAGKRYCLPNSRVMIHQPLGGYQGQASDIEIHTREILSIKH 163 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 ++S P ++ Sbjct: 164 ------------------------------RLNEIISFHTGKPIEEVAEDTDRDNFMDPT 193 Query: 217 EAKKVGLIDVVGGQEEV 233 AK+ GLID + + EV Sbjct: 194 AAKEYGLIDDILLKREV 210 >gi|323351064|ref|ZP_08086721.1| ATP-dependent Clp protease, protease subunit [Streptococcus sanguinis VMC66] gi|322122788|gb|EFX94497.1| ATP-dependent Clp protease, protease subunit [Streptococcus sanguinis VMC66] gi|324993705|gb|EGC25624.1| ATP-dependent Clp protease, protease subunit [Streptococcus sanguinis SK405] gi|324994982|gb|EGC26895.1| ATP-dependent Clp protease, protease subunit [Streptococcus sanguinis SK678] gi|325687068|gb|EGD29091.1| ATP-dependent Clp protease, protease subunit [Streptococcus sanguinis SK72] gi|325696303|gb|EGD38194.1| ATP-dependent Clp protease, protease subunit [Streptococcus sanguinis SK160] gi|327462975|gb|EGF09296.1| ATP-dependent Clp protease, protease subunit [Streptococcus sanguinis SK1] gi|327470480|gb|EGF15936.1| ATP-dependent Clp protease, protease subunit [Streptococcus sanguinis SK330] gi|327474578|gb|EGF19983.1| ATP-dependent Clp protease, protease subunit [Streptococcus sanguinis SK408] gi|327490136|gb|EGF21924.1| ATP-dependent Clp protease, protease subunit [Streptococcus sanguinis SK1058] gi|328946905|gb|EGG41042.1| ATP-dependent Clp protease, protease subunit [Streptococcus sanguinis SK1087] gi|332359077|gb|EGJ36898.1| ATP-dependent Clp protease, protease subunit [Streptococcus sanguinis SK49] gi|332362296|gb|EGJ40096.1| ATP-dependent Clp protease, protease subunit [Streptococcus sanguinis SK1056] gi|332367219|gb|EGJ44954.1| ATP-dependent Clp protease, protease subunit [Streptococcus sanguinis SK1059] Length = 196 Score = 41.1 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 61/192 (31%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D V+ + Sbjct: 87 QTIVMGVAASMGTIIASSGAKGKRFMLPNAEYLIHQPMGGAGSGTQQTDMAIVAEHLL-- 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + ++++E+ ++ ++ W + Sbjct: 145 --------------------------RTRNTLEKILAENSGKSVEQIHKDAERDYWMSAQ 178 Query: 217 EAKKVGLIDVVG 228 E + G ID + Sbjct: 179 ETLEYGFIDEIM 190 >gi|288931153|ref|YP_003435213.1| hypothetical protein Ferp_0768 [Ferroglobus placidus DSM 10642] gi|288893401|gb|ADC64938.1| protein of unknown function DUF107 [Ferroglobus placidus DSM 10642] Length = 424 Score = 41.1 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 72/199 (36%), Gaps = 37/199 (18%) Query: 37 HVARIAIRGQIEDSQEL-IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95 V + I G I + + IER +I+ +++A A++++L +PGG + E I I K Sbjct: 20 KVVEVRIEGAINEGTVIKIERAFKIAEEENADAILITLDTPGGLVKSTEKIVSMILSSKI 79 Query: 96 RKPVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 +ASAG +I A ++ +E + VG+ + +K Sbjct: 80 PVVTYVYPQGAFSASAGSIILIAGHVAAMSEGTSVGAATPIAVGVEGTKVEEKAVK---- 135 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIW 213 +V+ ++E R +++ Sbjct: 136 ------------------------------YLASYVKSIAEKRGRNATAIEKFVTEAYSL 165 Query: 214 TGAEAKKVGLIDVVGGQEE 232 + EA K +IDV+ +E Sbjct: 166 SAKEALKYNVIDVIANSKE 184 >gi|158317030|ref|YP_001509538.1| endopeptidase Clp [Frankia sp. EAN1pec] gi|158112435|gb|ABW14632.1| Endopeptidase Clp [Frankia sp. EAN1pec] Length = 213 Score = 41.1 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 61/186 (32%), Gaps = 33/186 (17%) Query: 43 IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102 + I ++ + ++ ++ +D + + ++SPGGS AG AI+ +Q V+N ++ Sbjct: 46 VEDSIANA--ICAQLLLLNAEDPERDIFLYINSPGGSVSAGMAIYDTMQYVENDVATVSL 103 Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 + L + A + + + Sbjct: 104 GLAASMGQFLLCAGAPGKRYSLPHARIMMHQPSGGIGG---------------------- 141 Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKV 221 + + + + + ++ P ++ SD R +T EAK Sbjct: 142 --------TASDIAIQAEQMLYTKRMMQERIAFHTGQPVEQIERDSDRDRWFTADEAKDY 193 Query: 222 GLIDVV 227 G +D V Sbjct: 194 GFVDHV 199 >gi|325264756|ref|ZP_08131485.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium sp. D5] gi|324030048|gb|EGB91334.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium sp. D5] Length = 193 Score = 41.1 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 52/181 (28%), Gaps = 31/181 (17%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++ ++ + DD + + ++SPGGS +G AI+ +Q +K + + Sbjct: 39 VSASVIVAQLLFLEADDPDKDIQLYINSPGGSVTSGLAIYDTMQYIKCDVSTVCIGMAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L A + + I V +K Sbjct: 99 MGAFLLSGGKKGKRFALPNAEIMIHQ-------PSGGAQGQATEIHIVAEHILKIRHKLN 151 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226 + +E+ D + EAK+ GLID Sbjct: 152 QIL-----------------------AENTGQSLDVIKVDTERDNYMSALEAKEYGLIDE 188 Query: 227 V 227 V Sbjct: 189 V 189 >gi|307293097|ref|ZP_07572943.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sphingobium chlorophenolicum L-1] gi|306881163|gb|EFN12379.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sphingobium chlorophenolicum L-1] Length = 211 Score = 41.1 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 24/203 (11%), Positives = 59/203 (29%), Gaps = 33/203 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG +G AI ++ ++ + Sbjct: 38 IIFVTGQVEDHMASLIVAQLLFLESENPKKDIWMYINSPGGVVTSGMAIHDTMKYIRPQV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + +GS + P + L + + Sbjct: 98 GTVC---------------------IGQAASMGSFLLAAGEPGKRIALSNARIMVHQPSG 136 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L + ++ + Sbjct: 137 GAQGMASDIEIQAKEILR---------IRSRLNNLYVQYTGRTLEEVERAMDRDTFLEAE 187 Query: 217 EAKKVGLIDVVGGQEEVWQSLYA 239 EAK GL+D V + Sbjct: 188 EAKAFGLVDEVFDRRPAAAETAE 210 >gi|166369013|ref|YP_001661286.1| ATP-dependent Clp protease proteolytic subunit 2 [Microcystis aeruginosa NIES-843] gi|166091386|dbj|BAG06094.1| ATP-dependent Clp protease proteolytic subunit 2 [Microcystis aeruginosa NIES-843] Length = 233 Score = 41.1 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 63/184 (34%), Gaps = 29/184 (15%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + ++ ++ + +D + + ++SPGGS YAG AI+ +Q+++ I + Sbjct: 69 ADSIVAQLLYLEAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVATICFGLAASMG 128 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L A+ ++ +S + L + I + Sbjct: 129 AFLLCGGAAGKRMSLPSSRIMIHQPLGGAQGQASDIAIQAKEILYI-------------- 174 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 Q + ++ ++ + EAK+ GLID+V Sbjct: 175 -----KQRLNTMLAHHTGQPYDRIA----------NDTERDFFMSAVEAKEYGLIDLVIS 219 Query: 230 QEEV 233 + E+ Sbjct: 220 RPEL 223 >gi|160893842|ref|ZP_02074625.1| hypothetical protein CLOL250_01396 [Clostridium sp. L2-50] gi|156864494|gb|EDO57925.1| hypothetical protein CLOL250_01396 [Clostridium sp. L2-50] Length = 193 Score = 41.1 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 58/181 (32%), Gaps = 31/181 (17%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +I ++ + +D + + + ++SPGGS AG I+ +Q +K I + Sbjct: 39 TSASIVIAQLLFLESEDPSKDISLYINSPGGSVTAGLGIYDTMQYIKCDVSTICCGMAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L A A + + ++ Sbjct: 99 MGAFLLAGGAKGKRFALPNAEIMIHQPSGGSQGQATEIEIAAK----------------- 141 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDV 226 + + R++SE+ PY+ ++ W + EA GLID Sbjct: 142 -------------HILKTKEKLNRMLSENTGKPYETIAADTERDNWMSAEEACAYGLIDS 188 Query: 227 V 227 V Sbjct: 189 V 189 >gi|126741244|ref|ZP_01756923.1| Protease subunit of ATP-dependent Clp protease [Roseobacter sp. SK209-2-6] gi|126717649|gb|EBA14372.1| Protease subunit of ATP-dependent Clp protease [Roseobacter sp. SK209-2-6] Length = 210 Score = 41.1 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + + ++SPGG +G +I+ +Q +K + Sbjct: 38 IIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + + S V + Sbjct: 98 STLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMVHQPSGGFQGQ---------------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + DK L + Sbjct: 142 --------------ATDIMIHAEETLKLKRRLNEIYVKHTGQELDKVEAALERDNFMSPE 187 Query: 217 EAKKVGLIDVV 227 EAK+ GLID + Sbjct: 188 EAKEFGLIDEI 198 >gi|57242492|ref|ZP_00370430.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter upsaliensis RM3195] gi|57016777|gb|EAL53560.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter upsaliensis RM3195] Length = 194 Score = 41.1 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I D ++ ++ + +D + + ++SPGG +G +I+ + +K Sbjct: 28 IVMLSGEINDDVASSIVAQLLFLEAEDPQKDIYLYINSPGGVITSGFSIYDTMNYIKPDV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 I + A L A A S + L Sbjct: 88 CTICIGQAASMGAFLLSCGAKQKRFALPNSRIMIHQPLG 126 >gi|148241694|ref|YP_001226851.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. RCC307] gi|147850004|emb|CAK27498.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp. RCC307] Length = 200 Score = 41.1 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 32/191 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++ D + L+ ++ + DDS+ + + ++SPGGS AG AI+ IQ +K+ Sbjct: 32 ILFLGGEVNDGVANALVAQMLYLDSDDSSKPIYLYINSPGGSVTAGLAIYDTIQYIKSDV 91 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + VA S + L + ++ Sbjct: 92 VTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTAQRQASDIEIEAR------ 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +++ +K +D + + Sbjct: 146 -----------------------EILRMKDQLNKQLADMSGQTIEKITKDTDRDYFLSAD 182 Query: 217 EAKKVGLIDVV 227 +AK GLID V Sbjct: 183 DAKAYGLIDRV 193 >gi|118444381|ref|YP_878863.1| ATP-dependent Clp protease proteolytic subunit [Clostridium novyi NT] gi|166201817|sp|A0Q2L1|CLPP_CLONN RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|118134837|gb|ABK61881.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium novyi NT] Length = 195 Score = 41.1 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 56/180 (31%), Gaps = 31/180 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGGS AG AI+ +Q +K I + A Sbjct: 44 VVAQLLFLEAEDPDKDIYLYINSPGGSITAGMAIYDTMQYIKPDVSTICIGMAASMGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A A S + L + Sbjct: 104 LTAGAKGKRFALPNSEIMIHQPLGGFQGQ------------------------------A 133 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQE 231 + + + + ++SE P + + EAK+ GLID V Sbjct: 134 TDIGIHANRILKIKDKLNSILSERTGQPLEVIKKDVERDNFMEAEEAKEYGLIDDVITSR 193 >gi|91224747|ref|ZP_01260007.1| hypothetical protein V12G01_01100 [Vibrio alginolyticus 12G01] gi|91190293|gb|EAS76562.1| hypothetical protein V12G01_01100 [Vibrio alginolyticus 12G01] Length = 458 Score = 41.1 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 41/272 (15%), Positives = 85/272 (31%), Gaps = 22/272 (8%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISR 62 +K++ ++ L L+ + V + ++G I S L IE Sbjct: 1 MKRLWIWFLPLLLIASQALA-----------NTVWIVPVKGAIGPATSDYLSREIEEAQL 49 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAI-QKVKNRKPVITEVHEMAASAGYLISCASNII 121 + + +I+ + +PGG A I AI + AASAG I AS++ Sbjct: 50 N-GVSLVILEMDTPGGLDSAMRDIIHAITTSSTPIATWVGPSGSRAASAGTYILLASHVA 108 Query: 122 VAAETSLVGSIGVL--FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 AE + +G+ + P D + + ++ ++ + + Sbjct: 109 AMAEATNLGAATPVALGGAPQPPSSDDGKDQNAEETPEGTNESSEKVPAKTAMEKKVIND 168 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + RN + + +S+ EA ++ +ID + E Sbjct: 169 AKAYIKGLAKLH----GRNAEWAE-KAVSEAASLDATEALELNVIDYIANSPEDLVKAID 223 Query: 240 LGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 + + + W + L Sbjct: 224 GQTVKVNNRTVTLSLENPTWVERTPDWRAEML 255 >gi|17488507|ref|NP_510985.1| Clp protease [Listeria phage 2389] gi|254933557|ref|ZP_05266916.1| clp protease [Listeria monocytogenes HPB2262] gi|17402412|emb|CAC85560.1| Clp protease [Listeria phage PSA] gi|293585121|gb|EFF97153.1| clp protease [Listeria monocytogenes HPB2262] gi|332311661|gb|EGJ24756.1| Clp protease [Listeria monocytogenes str. Scott A] Length = 248 Score = 41.1 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 23/205 (11%), Positives = 65/205 (31%), Gaps = 34/205 (16%) Query: 30 HVEDNSPHVARIAIRGQIEDS--QELIER-IERISRDDSATALIVSLSSPGGSAYAGEAI 86 +P +A + + G I ++ ++ + S + + V ++S GG + AI Sbjct: 16 KNSSENPEIADLYLYGSIGSGWFDDITSSEVQNFLKTSSVSQINVHVNSGGGDVFESIAI 75 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 ++ + + +A S +I+ A + I+ +++ Sbjct: 76 HNLLKAHPAKIS--IYIDALAGSGASVIAMAGDEIIMPSNAMMMIH-------------- 119 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 ++ + ++++ + + + + + Sbjct: 120 ----KAWTIAAGNADEFRKVANDMDKIDHAVTESYTERFV-----------GEREELVTL 164 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQE 231 L++ T E +G D +G E Sbjct: 165 LTNEEWLTAEECVTLGFCDSIGEIE 189 >gi|324991352|gb|EGC23285.1| ATP-dependent Clp protease, protease subunit [Streptococcus sanguinis SK353] gi|325690651|gb|EGD32652.1| ATP-dependent Clp protease, protease subunit [Streptococcus sanguinis SK115] gi|325694980|gb|EGD36884.1| ATP-dependent Clp protease, protease subunit [Streptococcus sanguinis SK150] Length = 196 Score = 41.1 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 61/192 (31%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D V+ + Sbjct: 87 QTIVMGVAASMGTIIASSGAKGKRFMLPNAEYLIHQPMGGAGSGTQQTDMAIVAEHLL-- 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + ++++E+ ++ ++ W + Sbjct: 145 --------------------------RTRNTLEKILAENSGKSVEQIHKDAERDYWMSAQ 178 Query: 217 EAKKVGLIDVVG 228 E + G ID + Sbjct: 179 ETLEYGFIDEIM 190 >gi|299532201|ref|ZP_07045595.1| enoyl-CoA hydratase [Comamonas testosteroni S44] gi|298719863|gb|EFI60826.1| enoyl-CoA hydratase [Comamonas testosteroni S44] Length = 304 Score = 41.1 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 26/275 (9%), Positives = 76/275 (27%), Gaps = 32/275 (11%) Query: 25 FSWSSHVEDNSPHVARIAIRGQ-----IEDS--QELIERIERISRDDSATALIVSLSS-- 75 + S + ++P +AR+ + I + +E+ +E + ++V + Sbjct: 5 STLSITPDPSNPRIARLLLNRPERLNAIGNQTPREIRRAVEWAQDNPDVHVIVVEGAGKG 64 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 G E + I+ ++ + E A ++ ++ ++ G Sbjct: 65 FCGGYDLAETAEQEIEHPCQQERTPWDPMEDYAFMKRNTEDFMSLWRCSKPTIAKVHG-- 122 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 + + + + ++ Sbjct: 123 ----------AAVAGGSDIALCCDLLIMANDARIGYMPTRVWGCPTTAMWTQRLGPMRAK 172 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 ++ G + +GA+A + GL + E+ + L + Sbjct: 173 ---------QMMFTGDVISGAQAAEWGLANEAVDASELEAATMKLANRIASVPRGHLAMH 223 Query: 256 KNYWFCDLKNLSIS--SLLEDTIPLMKQTKVQGLW 288 K + + + +L + + +G+W Sbjct: 224 KLVVNQTMLTMGLEQGQMLATVFDGITRHNPEGMW 258 >gi|330503117|ref|YP_004379986.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas mendocina NK-01] gi|328917403|gb|AEB58234.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas mendocina NK-01] Length = 213 Score = 41.1 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 57/191 (29%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ + ++ + + ++SPGGS AG AI+ +Q +K Sbjct: 45 VIFMVGQVEDYMANLICAQLLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKADV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L A S V L + ++ I + Sbjct: 105 STTCIGQACSMGAFLLAGGAKGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFI-- 162 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L++ + + + + Sbjct: 163 ----------------------------RERLNELLAHHTGQSLETIERDTNRDNFMSAS 194 Query: 217 EAKKVGLIDVV 227 A + GL+D V Sbjct: 195 RAVEYGLVDAV 205 >gi|227539189|ref|ZP_03969238.1| enoyl-CoA hydratase [Sphingobacterium spiritivorum ATCC 33300] gi|227240871|gb|EEI90886.1| enoyl-CoA hydratase [Sphingobacterium spiritivorum ATCC 33300] Length = 255 Score = 41.1 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 32/243 (13%), Positives = 63/243 (25%), Gaps = 36/243 (14%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 EL + I D + +I+ + + + + I M Sbjct: 31 DELTQAILEAEEDPAIEGIILHGKEN---FFTSGLDLITLYQYNEEQMKIFWSRFMTLIH 87 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 ++ + S G + D ++ + Sbjct: 88 TLTAFSKPSVAAISGHSPAGGC-------VLGICCDYRIMARGEFIIGLNEVPVGIVVPP 140 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + + +Y + L +G++ +A +VGLID V Sbjct: 141 SIFKLYSFWIGQRLAYQY------------------LLEGKLLNPEKALEVGLIDEVVDP 182 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + + + +RKIK + + K LLE + Q L Sbjct: 183 DRIRTAA--------LRKIKSVTQFEKNSWRSTKQNLRKELLESITQQQEAAIDQVLKQW 234 Query: 291 WNP 293 W P Sbjct: 235 WAP 237 >gi|302391398|ref|YP_003827218.1| hypothetical protein Acear_0611 [Acetohalobium arabaticum DSM 5501] gi|302203475|gb|ADL12153.1| protein of unknown function DUF107 [Acetohalobium arabaticum DSM 5501] Length = 436 Score = 41.1 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-EDSQELIERIERISRDDS 65 ++ R++ L L+ + + S+S+ E + + I + G+I +ER + + Sbjct: 6 RLNQRWMALILILVIGLLLSFSAVGEAEAKTIYEIPVEGEINLGLARFVERGIAQAENSQ 65 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 A A+++++ + GG A I I + PV+ V A SAG LI+ AS+ I Sbjct: 66 AEAILLTVDTFGGLVKAATMIRDDI--LGTELPVVAYVKNRAWSAGALITIASSDIFMDS 123 Query: 126 TS 127 S Sbjct: 124 GS 125 >gi|328676003|gb|AEB28678.1| ATP-dependent Clp protease proteolytic subunit [Francisella cf. novicida 3523] Length = 201 Score = 41.1 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 57/198 (28%), Gaps = 33/198 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++ D +I ++ + +D + ++SPGG AG ++ +Q +K Sbjct: 32 IVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTMQFIKPDV 91 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L A + +S + L + ++ +I +K Sbjct: 92 STICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKD 151 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216 K + D Sbjct: 152 RLNKVL------------------------------AHHTGQDLDTIIKDTDRDNFMMAD 181 Query: 217 EAKKVGLIDVVGGQEEVW 234 EAK GLID V E Sbjct: 182 EAKAYGLIDHVIESREAI 199 >gi|224532269|ref|ZP_03672901.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia valaisiana VS116] gi|224511734|gb|EEF82140.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia valaisiana VS116] Length = 197 Score = 41.1 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + +I ++ + +DS+ + + L+SPGGS AG AI+ +Q +K Sbjct: 33 IIFLSGEINDPKADTVIAQLLFLESEDSSKDIYLYLNSPGGSITAGLAIYDTMQYIKPDV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 I + A L S A + S + Sbjct: 93 RTICIGQAASMGAFLLASGAKGKRESLTYSRIMIHQPWG 131 >gi|196230686|ref|ZP_03129547.1| Endopeptidase Clp [Chthoniobacter flavus Ellin428] gi|196225027|gb|EDY19536.1| Endopeptidase Clp [Chthoniobacter flavus Ellin428] Length = 228 Score = 41.1 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + +I ++ + +D + + ++SPGGS AG AI+ +Q + Sbjct: 43 IIFLGTAIDDGVANSIIAQLLFLQMEDGKKDINIYINSPGGSVTAGLAIYDTMQFLTCDV 102 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L + A S + V Sbjct: 103 NTYCIGMAASMGAVLLAAGTKGKRYALPNSDIMIHQVSGGAQG----------------- 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 V+ + + + ++++ ++ SD + + Sbjct: 146 -------------TASDVERTVEFMFKLKKRLIHILAKHTGKTDEQVKTDSDRDYYMSAD 192 Query: 217 EAKKVGLIDVV 227 EAK GL+D V Sbjct: 193 EAKAYGLVDEV 203 >gi|49078976|gb|AAT49840.1| PA1801 [synthetic construct] Length = 214 Score = 41.1 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 55/175 (31%), Gaps = 31/175 (17%) Query: 60 ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASN 119 + ++ + + ++SPGGS AG +I+ +Q +K + A L A+ Sbjct: 67 LEAENPEKDIHLYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAG 126 Query: 120 IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 S + L + ++ I +K Sbjct: 127 KRYCLPHSRMMIHQPLGGFQGQASDIEIHAKEILFIK----------------------- 163 Query: 180 DVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEV 233 ++++ P D R +G EA K GLID V Q ++ Sbjct: 164 -------ERLNQILAHHTGQPLDVIARDTDRDRFMSGDEAVKYGLIDKVMTQRDL 211 >gi|225551910|ref|ZP_03772850.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia sp. SV1] gi|225370908|gb|EEH00338.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia sp. SV1] Length = 194 Score = 41.1 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + +I ++ + +DS + + L+SPGGS AG AI+ +Q +K Sbjct: 30 IIFLSGEINDPKADTVIAQLLFLESEDSNKDIYLYLNSPGGSITAGLAIYDTMQYIKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 I + A L A + S + Sbjct: 90 RTICIGQAASMGAFLLAGGAKGKRESLTYSRIMIHQPWG 128 >gi|150396095|ref|YP_001326562.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium medicae WSM419] gi|150027610|gb|ABR59727.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium medicae WSM419] Length = 208 Score = 41.1 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 26/199 (13%), Positives = 59/199 (29%), Gaps = 33/199 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + + ++ + ++ + + ++SPGG AG AI+ +Q +K Sbjct: 37 IIFLTGPVEDHMATLVCAQLLFLEAENPKKEIALYINSPGGVVTAGMAIYDTMQFIKPAV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + ++ A S + Sbjct: 97 STLCIGQAASMGSLLLAAGHKDMRFATPNSRIMVHQPSG--------------------- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + Y++ L + Sbjct: 136 -------GFQGQASDIERHA--RDILKMKRRLNEVYVKHCGRTYEEVEQTLDRDHFMSSD 186 Query: 217 EAKKVGLIDVVGGQEEVWQ 235 EA GLID V + + Sbjct: 187 EALDWGLIDKVITSRDAVE 205 >gi|262277075|ref|ZP_06054868.1| ATP-dependent Clp protease, proteolytic subunit ClpP [alpha proteobacterium HIMB114] gi|262224178|gb|EEY74637.1| ATP-dependent Clp protease, proteolytic subunit ClpP [alpha proteobacterium HIMB114] Length = 204 Score = 41.1 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 60/196 (30%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I S + ++ + ++++ + + ++SPGG G AI+ +Q +K Sbjct: 38 IIFLTGPINSYISSLVSAQLLFLESENNSKEIYLYINSPGGVVTDGLAIYDTMQFIKPTV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + AAS G + A + + I+ Sbjct: 98 STLCIGQ--AASMGSFLLAAGEKGLR-----MSLPNARIMVHQPSAGFQGQATDIEI--- 147 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + S+ + S+ + L + Sbjct: 148 --------------------HTKEILSTKKRLNEIYSKHTGQTVETIKEALERDNFMSAE 187 Query: 217 EAKKVGLIDVVGGQEE 232 EAKK GL+D V + + Sbjct: 188 EAKKFGLVDKVVEKRD 203 >gi|325293013|ref|YP_004278877.1| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium sp. H13-3] gi|325060866|gb|ADY64557.1| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium sp. H13-3] Length = 203 Score = 41.1 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 28/201 (13%), Positives = 68/201 (33%), Gaps = 33/201 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D+ + ++ + ++ + + ++SPGG +G A++ ++ ++ Sbjct: 33 IIFLNGEVNDAVSALVCAQLLFLEAENPKKPIHLYINSPGGVVTSGLAMYDTMRYIRAPV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + + + + G G P + + + Sbjct: 93 --------------HTLCMGTARSMGSFLLMAGEPGARAALPNASILIHQPSGGFQG--- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + H RL +E YD+ + R T Sbjct: 136 -------------QASDMLIHAEEIRQTKHRMTRLYAEHCKRSYDEFEAAMDRDRFMTVE 182 Query: 217 EAKKVGLIDVVGGQEEVWQSL 237 EA + GLID V E + Sbjct: 183 EALEWGLIDRVLDVREDVAAA 203 >gi|322835204|ref|YP_004215230.1| peptidase S14 ClpP [Rahnella sp. Y9602] gi|321170405|gb|ADW76103.1| peptidase S14 ClpP [Rahnella sp. Y9602] Length = 676 Score = 41.1 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 22/211 (10%), Positives = 55/211 (26%), Gaps = 40/211 (18%) Query: 32 EDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + + A I I +I +++ ++ + D + + SPGG + G AI+ Sbjct: 26 KASGDKTADIYIYDEIGYWGVTARQFTSSMKALGDLDHIN---LHIHSPGGDVFDGIAIY 82 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + K V + S+ I ++ + Sbjct: 83 NLLNSHTASKTVYID--------------------GLAASMASVIAMVGNPIIMPENAMM 122 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 + + ++ + ++ D+ ++ Sbjct: 123 MIHKPWGITGGDANDMRDYADLLDKVE------------AVLIPSYAKKTGKTPDELALM 170 Query: 208 SDGRIW-TGAEAKKVGLIDVVGGQEEVWQSL 237 W T E + G D + + + Sbjct: 171 LGEETWMTAQECLEHGFADQISTAVQAMARI 201 >gi|139437042|ref|ZP_01771202.1| Hypothetical protein COLAER_00176 [Collinsella aerofaciens ATCC 25986] gi|133776689|gb|EBA40509.1| Hypothetical protein COLAER_00176 [Collinsella aerofaciens ATCC 25986] Length = 210 Score = 41.1 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 31/185 (16%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + D+ + + ++SPGG Y+G AI + +K + I + +A Sbjct: 54 VVAQLLHLESQDAEKDISLYINSPGGEVYSGLAILDTMNFIKPQVSTICVGMAASMAAVL 113 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A S V I+ V K ++ Sbjct: 114 LSAGAKGKRFCLPHSKVMIHQ-------PSGGAQGQQTEIEIVAEEIKKTRRELNQILSD 166 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231 + P +K T EA GLID + Sbjct: 167 AS-----------------------GQPIEKVQADTERDNYLTAVEALDYGLIDRIVTSR 203 Query: 232 EVWQS 236 ++ Sbjct: 204 DLAAK 208 >gi|304311290|ref|YP_003810888.1| ATP-dependent Clp protease proteolytic subunit [gamma proteobacterium HdN1] gi|301797023|emb|CBL45236.1| ATP-dependent Clp protease proteolytic subunit [gamma proteobacterium HdN1] Length = 189 Score = 41.1 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K I + A Sbjct: 39 IVAQLLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKADVSTICVGQACSMGAFL 98 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A A S V L + ++ I + Sbjct: 99 LAAGAPGKRYALPNSRVMIHQPLGGFQGQASDIEIHAREIIT------------------ 140 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227 ++++ P +K + +AK+ GL+D V Sbjct: 141 ------------MKRRLNEMLAKHSGQPIEKVEGDTDRDNFMSAFDAKEYGLVDQV 184 >gi|187920338|ref|YP_001889369.1| hypothetical protein Bphyt_5652 [Burkholderia phytofirmans PsJN] gi|187718776|gb|ACD19999.1| protein of unknown function DUF107 [Burkholderia phytofirmans PsJN] Length = 522 Score = 41.1 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 5/89 (5%) Query: 6 KKIKTRYVMLSLVTLTVVY--FSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERIS 61 + ++ V+ L+ + + V I + G I + ++ ++R + Sbjct: 11 RLMRGMTVLGMLLAFGFASCESNVALRAAVAPNSVVVIPVNGAISPASADFIVRSLQRAA 70 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAI 90 D A ++ L +PGG + I +AI Sbjct: 71 ED-RAQLAVLQLDTPGGLDTSMRQIIKAI 98 >gi|19705312|ref|NP_602807.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|237742958|ref|ZP_04573439.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp. 4_1_13] gi|254302272|ref|ZP_04969630.1| S14 family endopeptidase ClpP [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|256028615|ref|ZP_05442449.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp. D11] gi|289766533|ref|ZP_06525911.1| endopeptidase Clp [Fusobacterium sp. D11] gi|296328560|ref|ZP_06871079.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|22653693|sp|Q8RHJ8|CLPP_FUSNN RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|19713281|gb|AAL94106.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|148322464|gb|EDK87714.1| S14 family endopeptidase ClpP [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|229430606|gb|EEO40818.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp. 4_1_13] gi|289718088|gb|EFD82100.1| endopeptidase Clp [Fusobacterium sp. D11] gi|296154369|gb|EFG95168.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 193 Score = 41.1 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 55/179 (30%), Gaps = 29/179 (16%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + +I ++ + +D +I+ ++SPGGS G AI+ + +K + + Sbjct: 40 ANSIIAQLLYLEAEDPEKDIIMYINSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMG 99 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L + A A E S + L D Sbjct: 100 AFLLAAGAKGKRFALENSRIMIHQPLISGGLKGQATDI---------------------- 137 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227 + + + L++++ ++ + EA GLID V Sbjct: 138 ------SIHANELLKIKDRLAELLAKNTGKTKEQILRDTERDNYLSSEEAVNYGLIDSV 190 >gi|332298209|ref|YP_004440131.1| ATP-dependent Clp protease proteolytic subunit [Treponema brennaborense DSM 12168] gi|332181312|gb|AEE17000.1| ATP-dependent Clp protease proteolytic subunit [Treponema brennaborense DSM 12168] Length = 204 Score = 41.1 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G+I D + ++ +I + +S + + ++SPGGS AG AI+ IQ VK Sbjct: 34 IVFIDGEITDMTADLIVAQILFLDSQNSEKDISLYINSPGGSVTAGLAIYDTIQSVKCDT 93 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 I + +A L + A +S V Sbjct: 94 QTICVGQAASMAAILLAGGTAGKRYALPSSRVMIHQPWG 132 >gi|322704346|gb|EFY95942.1| enoyl-CoA hydratase/isomerase family protein [Metarhizium anisopliae ARSEF 23] Length = 283 Score = 41.1 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 1/79 (1%) Query: 209 DGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLS 267 +GR +TG +A + GL D ++ + + + + + LK L Sbjct: 184 EGRRFTGQQAVEYGLADATAASLDDALRFIAERQLTEKAKAGVYGVIKTELHKDLLKELR 243 Query: 268 ISSLLEDTIPLMKQTKVQG 286 + + + ++ G Sbjct: 244 KEGVDREEARFNEDQRLDG 262 >gi|255284021|ref|ZP_05348576.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bryantella formatexigens DSM 14469] gi|255265474|gb|EET58679.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bryantella formatexigens DSM 14469] Length = 194 Score = 41.1 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 52/176 (29%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D A + + ++SPGGS AG AI+ +Q +K I + A Sbjct: 44 IVAQLLFLESEDPAKDIQLYINSPGGSVSAGWAIYDTMQYIKCDVSTICMGMAASMGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L A A + + + + Sbjct: 104 LAGGAKGKRFALPNAQIMIHQPSGGAKGQASDIKIVAEE--------------------- 142 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227 + S ++ + P D T EAK GLID V Sbjct: 143 ---------ILKSRKRLNEYLAANTGQPIDVIEADTERDNYMTAEEAKAYGLIDAV 189 >gi|323705911|ref|ZP_08117482.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermoanaerobacterium xylanolyticum LX-11] gi|323534709|gb|EGB24489.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermoanaerobacterium xylanolyticum LX-11] Length = 194 Score = 40.8 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + +I D ++ ++ + +D + + ++SPGGS + AI+ +Q +K Sbjct: 29 IVFLGEEINDVSASLVVAQLLFLEGEDPDKDIWLYINSPGGSITSAFAIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + +A A L + A + S + L + + + + + Sbjct: 89 VTMCVGMAASAGAFLLAAGAKGKRFSLPNSEIMIHQPLG---GTQGQATDIKIHAERIIK 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 K SE P +K ++ + Sbjct: 146 MKQKLNKIL---------------------------SERTGQPLEKIERDTERDFFMDPE 178 Query: 217 EAKKVGLIDVV 227 EAK GLID + Sbjct: 179 EAKAYGLIDEI 189 >gi|303244706|ref|ZP_07331037.1| protein of unknown function DUF114 [Methanothermococcus okinawensis IH1] gi|302484920|gb|EFL47853.1| protein of unknown function DUF114 [Methanothermococcus okinawensis IH1] Length = 279 Score = 40.8 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 5/106 (4%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+E++ I D ++ +PGG A E I A+++ K + VI + M Sbjct: 67 IEDSEEVLRAIRMTPEDMPIDLIL---HTPGGLVLASEQIAMALKEHKAKTTVIIPHYAM 123 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 + G LIS A + I+ + +++G + ++ + Sbjct: 124 SG--GSLISLAVDEIIMDKNAVMGPVDPQIGQYPAASIINTVNSKY 167 >gi|28900960|ref|NP_800615.1| hypothetical protein VPA1105 [Vibrio parahaemolyticus RIMD 2210633] gi|260366172|ref|ZP_05778632.1| serine protease [Vibrio parahaemolyticus K5030] gi|260879814|ref|ZP_05892169.1| serine protease [Vibrio parahaemolyticus AN-5034] gi|260894488|ref|ZP_05902984.1| serine protease [Vibrio parahaemolyticus Peru-466] gi|28809406|dbj|BAC62448.1| putative membrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|308086486|gb|EFO36181.1| serine protease [Vibrio parahaemolyticus Peru-466] gi|308091942|gb|EFO41637.1| serine protease [Vibrio parahaemolyticus AN-5034] gi|308114744|gb|EFO52284.1| serine protease [Vibrio parahaemolyticus K5030] Length = 459 Score = 40.8 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 7/218 (3%) Query: 36 PHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ-K 92 V + ++G I +S L IE+ + + +I+ + +PGG A I AI Sbjct: 21 NTVWIVPVKGAIGPANSDYLTREIEQAQIN-GVSLVILKMDTPGGLDSAMRDIIHAITTS 79 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 + AASAG I AS++ AE + +G+ + + G Sbjct: 80 TTPIATWVGPSGSRAASAGTYILLASHVAAMAEATNLGAATPVAIGGAPQAPSSDDGKDK 139 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 ++ S K + P M + V++ + + L +S+ Sbjct: 140 EA--SDENKPNAEKSGDQVPAKTAMEKKVINDAKAYIKGLAKLHDRNAQWAEKAVSEAAS 197 Query: 213 WTGAEAKKVGLIDVVGGQ-EEVWQSLYALGVDQSIRKI 249 EA ++ +IDV+ EE+ ++ V + + Sbjct: 198 LDAEEALELNVIDVIANSPEELVTAINGKSVKVNNLPV 235 >gi|34762747|ref|ZP_00143736.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|256846930|ref|ZP_05552384.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium sp. 3_1_36A2] gi|294784271|ref|ZP_06749566.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium sp. 3_1_27] gi|27887597|gb|EAA24677.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|256717728|gb|EEU31287.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium sp. 3_1_36A2] gi|294488137|gb|EFG35488.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium sp. 3_1_27] Length = 193 Score = 40.8 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 55/179 (30%), Gaps = 29/179 (16%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + +I ++ + +D +I+ ++SPGGS G AI+ + +K + + Sbjct: 40 ANSIIAQLLYLEAEDPEKDIIMYINSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMG 99 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L + A A E S + L D Sbjct: 100 AFLLAAGAKGKRFALENSRIMIHQPLISGGLKGQATDI---------------------- 137 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227 + + + L++++ ++ + EA GLID V Sbjct: 138 ------SIHANELLKIKDRLAELLAKNTGKTKEQILRDTERDNYLSSEEAVNYGLIDSV 190 >gi|157374680|ref|YP_001473280.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sediminis HAW-EB3] gi|189082467|sp|A8FTH9|CLPP_SHESH RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|157317054|gb|ABV36152.1| Endopeptidase Clp [Shewanella sediminis HAW-EB3] Length = 203 Score = 40.8 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 52/176 (29%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + + + + ++SPGGS AG AI+ +Q +K + + A Sbjct: 53 IVAQLLFLESESPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFL 112 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L A S V L + + + + + K Sbjct: 113 LAGGAEGKRHCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILGIKNKLNQML------ 163 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227 ++ P + + AEA + GL+D V Sbjct: 164 ---------------------ADHTGQPMEIIERDTDRDNFMSAAEAAEYGLVDSV 198 >gi|20129427|ref|NP_609388.1| CG5045 [Drosophila melanogaster] gi|7297671|gb|AAF52923.1| CG5045 [Drosophila melanogaster] gi|21428864|gb|AAM50151.1| GH10833p [Drosophila melanogaster] gi|220944040|gb|ACL84563.1| CG5045-PA [synthetic construct] gi|220954028|gb|ACL89557.1| CG5045-PA [synthetic construct] gi|223966793|emb|CAR93133.1| CG5045-PA [Drosophila melanogaster] Length = 253 Score = 40.8 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D S ++ ++ + ++ + + ++SPGG AG AI+ +Q VK Sbjct: 55 IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A + + + + + I +K Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIK- 173 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + R T E Sbjct: 174 -------------------RQLTNIYVKHAKNTYEEMSGRMERD---------HFMTPEE 205 Query: 218 AKKVGLIDVV 227 AK +G+ID V Sbjct: 206 AKVLGIIDHV 215 >gi|138896648|ref|YP_001127101.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus thermodenitrificans NG80-2] gi|196249350|ref|ZP_03148048.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus sp. G11MC16] gi|166201825|sp|A4ISQ2|CLPP_GEOTN RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|134268161|gb|ABO68356.1| ATP-dependent Clp protease [Geobacillus thermodenitrificans NG80-2] gi|196211107|gb|EDY05868.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus sp. G11MC16] Length = 196 Score = 40.8 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 65/196 (33%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + ++ ++ ++ +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IIFLGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIYDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A S V L ++ Sbjct: 89 STICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGAQGQATEIEIAAKR------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + R+++E+ P + T Sbjct: 143 ------------------------ILFLRDKLNRILAENTGQPIEVIERDTDRDNFMTAQ 178 Query: 217 EAKKVGLIDVVGGQEE 232 +A++ G+ID V + E Sbjct: 179 KAQEYGIIDRVLTRLE 194 >gi|14520866|ref|NP_126341.1| nodulation protein nfed [Pyrococcus abyssi GE5] gi|5458083|emb|CAB49572.1| nfeD nodulation protein homolog, probable membrane protein [Pyrococcus abyssi GE5] Length = 440 Score = 40.8 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 6/93 (6%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSS 75 + L ++ F++ + V I+GQI + I + +A A+I+ + Sbjct: 4 IILPLLVFAFIASPVLAGNVVYVAQIKGQITSYTYDQFDRYITIAEEN-NAEAIIIEFDT 62 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 PGG +A+ IQ+++ K + Sbjct: 63 PGG---RADAMMNIIQRIQQSKVPVIIYVYPPG 92 >gi|289523257|ref|ZP_06440111.1| nodulation efficiency family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503800|gb|EFD24964.1| nodulation efficiency family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 323 Score = 40.8 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 72/227 (31%), Gaps = 40/227 (17%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQEL--IERIERISR 62 +K++ + +L L+T + + S V + + G + E I+ + + Sbjct: 1 MKRLIWVFSILLLLT------AGPGWAGEKSNVVMVVPLEGTVGTVMETYMIDVLRKAEE 54 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 A ++ L +PGG + I + I + + + A++ ++ I Sbjct: 55 --EAYMVVFELDTPGGLVSSMTEITKQITQARVPVVMWVYPSGARAASAGAFLVMASHIA 112 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A ++G + + S + N A QM Sbjct: 113 AMAPG------------------TRIGAAHPVLASGGDVDDTMGEKITNDLAAQMRSLAG 154 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 RN + ++++ T EA K G+ID + Sbjct: 155 T-----------RGRNSRVAE-RMVTESLSLTAEEALKEGVIDCIAS 189 >gi|160947717|ref|ZP_02094884.1| hypothetical protein PEPMIC_01652 [Parvimonas micra ATCC 33270] gi|158446851|gb|EDP23846.1| hypothetical protein PEPMIC_01652 [Parvimonas micra ATCC 33270] Length = 192 Score = 40.8 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D + ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IIFLSGEVNDQMADLIVAQLLFLESEDPKKDIQIYINSPGGSVSAGLAIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S A A + + L + I V Sbjct: 89 STICIGRAASMGAFLLTSGAKGKRFALPNADIMIHQPLGGAQGQAEDIKIQAQKILQV-- 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 ++++ K +D + + Sbjct: 147 ----------------------------RATLNEILAKRTGQSLKKIEKDTDRDFYMSAY 178 Query: 217 EAKKVGLIDVV 227 EAK+ G+ID V Sbjct: 179 EAKEYGIIDEV 189 >gi|261868693|ref|YP_003256615.1| ATP-dependent Clp protease proteolytic subunit [Aggregatibacter actinomycetemcomitans D11S-1] gi|293391572|ref|ZP_06635906.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aggregatibacter actinomycetemcomitans D7S-1] gi|261414025|gb|ACX83396.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aggregatibacter actinomycetemcomitans D11S-1] gi|290952106|gb|EFE02225.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aggregatibacter actinomycetemcomitans D7S-1] Length = 188 Score = 40.8 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED+ ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 24 VIFLSGEVEDNMANLIVAQLLFLESEDPDKDINLYINSPGGSVTAGMAIYDTMQFIKPDV 83 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A+ A + V L + Sbjct: 84 RTLCIGQACSMGAFLLAGGAAGKRGALPHARVMIHQPLGGFRGQ---------------- 127 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +Q+ + ++ P + +D + + Sbjct: 128 --------------ASDIQIHAQEILKIKSTLNERLAFHTGQPIETIEKDTDRDNFMSAQ 173 Query: 217 EAKKVGLIDVV 227 EAK GLID V Sbjct: 174 EAKNYGLIDEV 184 >gi|116243166|sp|Q1GGF6|CLPP_SILST RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp Length = 210 Score = 40.8 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + + ++SPGG +G +I+ +Q +K + Sbjct: 38 IIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + + S V Y Sbjct: 98 STLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMVHQPSGGYQGQ---------------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + YD L + Sbjct: 142 --------------ATDIMIHAEETLKLKRRLNEIYVKHTGQDYDTIEKALERDNFMSPE 187 Query: 217 EAKKVGLIDVV 227 +AK+ GLID + Sbjct: 188 QAKEFGLIDEI 198 >gi|127512166|ref|YP_001093363.1| peptidase S41 [Shewanella loihica PV-4] gi|126637461|gb|ABO23104.1| peptidase S41 [Shewanella loihica PV-4] Length = 1104 Score = 40.8 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 33/268 (12%), Positives = 68/268 (25%), Gaps = 33/268 (12%) Query: 5 LKKIKTRYVMLSLVTL--TVVYFSWSSHVEDNSPHVARIAIRGQI-------EDSQELIE 55 LK+ + + + L + V +N+ VA+ A G+I S ++ Sbjct: 858 LKRDRNSFKTIVLPVANRADAKLRYLDWVNNNNQKVAK-AADGEIGYLHLYAMGSGDIAN 916 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 + LI+ + G I + +++ + Sbjct: 917 FAREFYANIEKKGLIIDVRRNRGGNIDSWIIEKLLRRAW----------MFWQPTQGTPN 966 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 ++ + LG++ + A + Sbjct: 967 TNMQQTFRGHLVVLTDQLTYSDGETFSAGIKALGLAP-LIGKQTAGAGVWLSGRNSLTDK 1025 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 M + Y R + E R I D + L + G +A+ Sbjct: 1026 GMARVAEYPQYAMDGRWIVEGRGISPDIEVDNLPHAT-FKGEDAQLNK----------AL 1074 Query: 235 QSLYALGVDQSIRKIKDWNPPKNYWFCD 262 L + + IK P + D Sbjct: 1075 NYLKQKLELEPVLPIKAQPMPSSGMAQD 1102 >gi|99081368|ref|YP_613522.1| ATP-dependent Clp protease proteolytic subunit [Ruegeria sp. TM1040] gi|99037648|gb|ABF64260.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ruegeria sp. TM1040] Length = 218 Score = 40.8 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + + ++SPGG +G +I+ +Q +K + Sbjct: 46 IIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 105 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + + S V Y Sbjct: 106 STLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMVHQPSGGYQGQ---------------- 149 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + YD L + Sbjct: 150 --------------ATDIMIHAEETLKLKRRLNEIYVKHTGQDYDTIEKALERDNFMSPE 195 Query: 217 EAKKVGLIDVV 227 +AK+ GLID + Sbjct: 196 QAKEFGLIDEI 206 >gi|159030460|emb|CAO91362.1| clpP2 [Microcystis aeruginosa PCC 7806] Length = 233 Score = 40.8 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 63/184 (34%), Gaps = 29/184 (15%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + ++ ++ + +D + + ++SPGGS YAG AI+ +Q+++ I + Sbjct: 69 ADSIVAQLLYLEAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVATICFGLAASMG 128 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L A+ ++ +S + L + I + Sbjct: 129 AFLLCGGAAGKRMSLPSSRIMIHQPLGGAQGQASDIAIQAKEILYI-------------- 174 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 Q + ++ ++ + EAK+ GLID+V Sbjct: 175 -----KQRLNTMLAHHTGQPYDRIA----------NDTERDFFMSAVEAKEYGLIDLVIS 219 Query: 230 QEEV 233 + E+ Sbjct: 220 RPEL 223 >gi|298252276|ref|ZP_06976079.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963] gi|297546868|gb|EFH80736.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963] Length = 211 Score = 40.8 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 63/194 (32%), Gaps = 31/194 (15%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D+ ++ ++ ++ +DS + + ++SPGGS AG I+ ++ + Sbjct: 31 IIVVNGPIDDTMSGLVVAQLLYLAAEDSKREINMYINSPGGSINAGLGIYDTMRVLPCPI 90 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L++ + + + P + L I Sbjct: 91 STTCVGYAASFGTILLLAGEKGRRFSMPHARIHLHQ-----PLISGSLSGQASDIDI--- 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + ++ E ++ ++ + + Sbjct: 143 --------------------HAREILHLRSEINDIIQEHSGQTLERIQKDTNRDFYMSAV 182 Query: 217 EAKKVGLIDVVGGQ 230 EAK+ G+ID + Sbjct: 183 EAKEYGIIDDILTY 196 >gi|205361509|gb|ACI03633.1| capsid protein [Wolbachia phage WO] Length = 134 Score = 40.8 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P + + ++ +++ +D Y FV+L++ +R++ + G + G +A ++GL D Sbjct: 1 PHEPMTSEGLKSLREEIDRLYEMFVQLIARNRSLSIEAIKSTEAGLYF-GEKAVEIGLAD 59 Query: 226 VVGGQEEVWQ 235 V E Sbjct: 60 GVTTFFEFIN 69 >gi|89073724|ref|ZP_01160238.1| hypothetical membrane protein [Photobacterium sp. SKA34] gi|89050499|gb|EAR55991.1| hypothetical membrane protein [Photobacterium sp. SKA34] Length = 462 Score = 40.8 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 42/273 (15%), Positives = 90/273 (32%), Gaps = 25/273 (9%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATAL 69 ++ L++L + S + V I I+G I S + I ++ +A + Sbjct: 4 FIQYLLLSLVLFCSSVFAQD------VWVINIKGGIGPATSDYVTREISEAQKN-NAAMI 56 Query: 70 IVSLSSPGGSAYAGEAIFRAIQK--------VKNRKPVITEVHEMAASAGYLISCASNII 121 I+ +PGG + I +AI V A ++ S A+ Sbjct: 57 ILQFDTPGGLDSSMRQIIQAITVSPVPVATWVGPSGSRAASAGTYILLASHIASMANGTN 116 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 + A T + G + P+ ++ S +KSS + S M V Sbjct: 117 LGAATPVSIGGGNAGESPFTGDKSEEKSKSEDEIKSSEGSDQSSKEPAAKKSGSAMENKV 176 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQS---- 236 ++ + + L +++ + A + +ID + +V + Sbjct: 177 INDAAAYIESLAKLHNRNAKWAVKAVTESASISAETALQKNVIDFIAQDVAKVVEKSNGR 236 Query: 237 LYALGVDQ---SIRKIKDWNPPKNYWFCDLKNL 266 + L + + ++ +++ F L L Sbjct: 237 MVKLNGVETPVELNNVRFVEREQDWRFKLLSVL 269 >gi|119486045|ref|ZP_01620107.1| hypothetical protein L8106_05975 [Lyngbya sp. PCC 8106] gi|119456820|gb|EAW37948.1| hypothetical protein L8106_05975 [Lyngbya sp. PCC 8106] Length = 291 Score = 40.8 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 14/182 (7%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS++++ I D ++ +PGG A E I A+ + + + V V Sbjct: 69 IEDSEQVLRAIRLTPSDVPIDLIL---HTPGGLVLATEQIAHALIRHQAK--VTVFVPHY 123 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 A S G +++ AS+ IV E +++G I L L S + + Sbjct: 124 AMSGGTMLALASDEIVMDENAVLGPIDPQLGNFPAASILKVLEDKPIS----EIDDQTLI 179 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-----WTGAEAKKV 221 ++++ KA++ +QD V + + + L+ GRI EA K+ Sbjct: 180 MADISRKAIRQVQDFVRTLLEDNIPQQKIDPSRIDGVINALTTGRITHDCPIMAEEAAKL 239 Query: 222 GL 223 GL Sbjct: 240 GL 241 >gi|205361507|gb|ACI03632.1| capsid protein [Wolbachia phage WO] Length = 134 Score = 40.8 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P + + ++ ++D +D Y FV+L++ +R++ + G + G +A ++GL D Sbjct: 1 PHEPMTSEGLKSLRDEIDRLYEMFVQLIARNRSLSIEAIKSTEAGLYF-GEKAVEIGLAD 59 Query: 226 VVGGQEEVWQ 235 V E Sbjct: 60 GVTTFFEFIN 69 >gi|308069939|ref|YP_003871544.1| membrane-bound serine protease (ClpP class) [Paenibacillus polymyxa E681] gi|305859218|gb|ADM71006.1| Membrane-bound serine protease (ClpP class) [Paenibacillus polymyxa E681] Length = 455 Score = 40.8 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 81/236 (34%), Gaps = 21/236 (8%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISR 62 K I ++ V L + S S+ + V I + +IE + +ER + Sbjct: 9 SRKLIFLTLWIMVSVLLLPLVHSESAAAQTKGGAVFVIPVDQEIEQGLGKFMERGFAEAA 68 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D A +++ +++PGG E + + I+ + P + + AASAG I+ ++N IV Sbjct: 69 DSKAGLILLDINTPGGRVDTAEKLGKLIK--DSPIPTVAYIRGEAASAGSYIALSANKIV 126 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 S++G L + P S + + Sbjct: 127 MKPGSIIG--------------AAALVDGRGQAITDPKTVAWWKSSMASAAEAGGRNPDI 172 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE-EVWQSL 237 VS + + T EA K+G D + E EV Q + Sbjct: 173 ARGMVDSKTTVSIPEMNFSKENGQIVS---LTSEEALKLGYADHIASSEQEVIQWM 225 >gi|145341425|ref|XP_001415810.1| mitochondrial Clp protease, subunit of ClpP peptidase complex [Ostreococcus lucimarinus CCE9901] gi|144576033|gb|ABO94102.1| mitochondrial Clp protease, subunit of ClpP peptidase complex [Ostreococcus lucimarinus CCE9901] Length = 232 Score = 40.8 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G I+D+ + ++ + + + ++SPGGS AG I+ +Q V Sbjct: 58 IVFVNGPIDDNVSSLTVAQLLFLESVSPTQPIWMYINSPGGSVTAGLGIYDTMQYVSPPI 117 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + S V + + + + Sbjct: 118 HTLCVGQASSMGSLLLAAGEPGQRRSLPHSRVMLHQPSG---GASGQASDIAIHAQEI-- 172 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 +N + + + + ++ V+ R+ T + Sbjct: 173 ------------LNVRQKLVQIYMKHTKQNFDSIGVTLERD------------TFMTPED 208 Query: 218 AKKVGLIDVV 227 AK+ GLID V Sbjct: 209 AKEFGLIDEV 218 >gi|218461999|ref|ZP_03502090.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli Kim 5] Length = 203 Score = 40.8 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D+ + ++ + ++ + + ++SPGG +G A++ ++ ++ Sbjct: 33 IIFLNGEVNDTVSALVCAQLLFLEAENPHKPINLYINSPGGVVTSGLAMYDTMRFIRAPV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + + + + G G P + + + Sbjct: 93 --------------HTLCMGTARSMGSFLLMAGEPGGRAALPNASILIHQPSGGFQG--- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + RL +E Y+ + R T Sbjct: 136 -------------QASDMLIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAE 182 Query: 217 EAKKVGLIDVV 227 EA + GLID + Sbjct: 183 EALEWGLIDRI 193 >gi|254476195|ref|ZP_05089581.1| Clp protease [Ruegeria sp. R11] gi|214030438|gb|EEB71273.1| Clp protease [Ruegeria sp. R11] Length = 202 Score = 40.8 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 61/190 (32%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + + ++SPGG +G +I+ +Q +K + Sbjct: 30 IIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPK- 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + +V + + +GS+ + P ++ L V + Sbjct: 89 --------------------VSTLVIGQAASMGSLLLTAGEPGMRFSLPNSRVMVHQPSG 128 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + V + L + E Sbjct: 129 GFQGQATDIMIHAEETLKLKKRLNEIY--------VKHTGQDYDSIVNALERDNFMSPEE 180 Query: 218 AKKVGLIDVV 227 AK+ GLID + Sbjct: 181 AKEFGLIDEI 190 >gi|291237477|ref|XP_002738663.1| PREDICTED: Dci protein-like [Saccoglossus kowalevskii] Length = 303 Score = 40.8 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 10/87 (11%), Positives = 32/87 (36%), Gaps = 4/87 (4%) Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW----QSLYALGVDQ 244 + ++ + L G++++ +A+ +GL+D + ++V + + Sbjct: 189 WFIETMKNTIGHRETEKSLQLGKLYSPEQAENIGLVDQICPPDDVLGCARKEMVKWLKIP 248 Query: 245 SIRKIKDWNPPKNYWFCDLKNLSISSL 271 +I +N +L + + Sbjct: 249 DHARILTKQLMRNELINNLSSKRKEDI 275 >gi|167748739|ref|ZP_02420866.1| hypothetical protein ANACAC_03513 [Anaerostipes caccae DSM 14662] gi|167651709|gb|EDR95838.1| hypothetical protein ANACAC_03513 [Anaerostipes caccae DSM 14662] Length = 202 Score = 40.8 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 61/186 (32%), Gaps = 28/186 (15%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + D + + ++SPGGS AG AI+ ++ ++ I + A Sbjct: 44 IVAQMLFLEAQDPGRDIQLYINSPGGSVTAGFAIYDTMKYIQCDVATICVGLAASFGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L +A + + ++ + + Sbjct: 104 LAGGTQGKRMALPNAEIMIHQPAIHGNGIQGPASDIKI---------------------- 141 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231 M D + + R+++E+ ++ + EA K GLID V + Sbjct: 142 -----MSDYMQKNKQRLNRILAENTGRSIEEIERDTDRDHFMSAEEALKYGLIDSVISKR 196 Query: 232 EVWQSL 237 + Q L Sbjct: 197 QKKQHL 202 >gi|111115440|ref|YP_710058.1| ATP-dependent Clp protease proteolytic component [Borrelia afzelii PKo] gi|216263526|ref|ZP_03435521.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia afzelii ACA-1] gi|123145670|sp|Q0SMP6|CLPP_BORAP RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|110890714|gb|ABH01882.1| ATP-dependent Clp protease proteolytic component [Borrelia afzelii PKo] gi|215980370|gb|EEC21191.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia afzelii ACA-1] Length = 197 Score = 40.8 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + +I ++ + +DS + + L+SPGGS AG AI+ +Q +K Sbjct: 33 IIFLSGEINDPKADTVIAQLLFLESEDSNKDIYLYLNSPGGSITAGLAIYDTMQYIKPDV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 I + A L + A + S + Sbjct: 93 RTICIGQAASMGAFLLAAGAKGKRESLTYSRIMIHQPWG 131 >gi|71892027|ref|YP_277757.1| ATP-dependent Clp protease proteolytic subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|110816455|sp|Q493F8|CLPP_BLOPB RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|71796133|gb|AAZ40884.1| ATP-dependent Clp protease proteolytic subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 208 Score = 40.8 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IEDS ++ ++ + ++S + + ++SPGG AG +I+ IQ V+ Sbjct: 43 IIFMTGTIEDSVANLIVAQMMFLESENSEKDIHLYINSPGGVITAGMSIYDTIQFVRPDV 102 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + SA L S + + L + + I +K+ Sbjct: 103 STFCMGQAASMSAFLLASGTKGKRFCLPNARIMIHQPLGSFQGQATDIAIHTREILKIKN 162 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + K L+++ D + Sbjct: 163 NINK------------------------------LMAKHTGQSIDIINKDTERDCFLSAD 192 Query: 217 EAKKVGLIDVV 227 EA K GL+D V Sbjct: 193 EAMKYGLVDCV 203 >gi|125975222|ref|YP_001039132.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium thermocellum ATCC 27405] gi|256003116|ref|ZP_05428108.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium thermocellum DSM 2360] gi|281419196|ref|ZP_06250212.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium thermocellum JW20] gi|166201818|sp|A3DJ10|CLPP_CLOTH RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|125715447|gb|ABN53939.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium thermocellum ATCC 27405] gi|255992807|gb|EEU02897.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium thermocellum DSM 2360] gi|281407062|gb|EFB37324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium thermocellum JW20] gi|316939386|gb|ADU73420.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium thermocellum DSM 1313] Length = 194 Score = 40.8 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 64/192 (33%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + +I D ++ ++ + +D + + ++SPGGS AG AI+ +Q VK Sbjct: 29 IIVLSDEINDVTASLVVAQMLFLEAEDPDKDIQLYINSPGGSVTAGFAIYDTMQYVKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A S + L + + + + + Sbjct: 89 STICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLG---GARGQATDIKIHAEQIIK 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 K SE P++K ++ + + Sbjct: 146 IKNKLNRIL---------------------------SERTGQPFEKIERDTERDFFMSAE 178 Query: 217 EAKKVGLIDVVG 228 EAK G++D V Sbjct: 179 EAKAYGIVDEVM 190 >gi|328947527|ref|YP_004364864.1| ATP-dependent Clp protease proteolytic subunit [Treponema succinifaciens DSM 2489] gi|328447851|gb|AEB13567.1| ATP-dependent Clp protease proteolytic subunit [Treponema succinifaciens DSM 2489] Length = 216 Score = 40.8 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 65/192 (33%), Gaps = 34/192 (17%) Query: 41 IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 I + G+I + ++++I ++ + D+ + + + SPGG YAG AIF I+ + Sbjct: 50 ILLSGEICEELAEKIIRQLLILEADND-KPIYIYIDSPGGDVYAGFAIFDTIRFINAPVY 108 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 +I +A+A L+S + S + + I+ + Sbjct: 109 IIGTGLIASAAALILLSVPKERRLGLPHSSYLIHQ-------PSSGMKGVATDIEIHAAE 161 Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAE 217 K ++SE +K +D W E Sbjct: 162 LAKTRTK-----------------------INEIISEQTGTSLEKVSKDTDRDYWLNSEE 198 Query: 218 AKKVGLIDVVGG 229 A + GLI V Sbjct: 199 AVQYGLICKVIT 210 >gi|163789795|ref|ZP_02184232.1| ATP-dependent Clp protease proteolytic subunit [Carnobacterium sp. AT7] gi|159875017|gb|EDP69084.1| ATP-dependent Clp protease proteolytic subunit [Carnobacterium sp. AT7] Length = 197 Score = 40.8 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 58/192 (30%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G ++D +I ++ + DS + + ++SPGGS AG AIF + +K Sbjct: 29 IIMLSGPVDDDLANAVIAQLLFLDAQDSEKDIYIYINSPGGSVTAGLAIFDTMNFIKADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A + + ++ Sbjct: 89 QTIAMGMAASMGSFLLTAGTKGKRYALPNAEIMIHQPSGGSQGQATEIEIAAR------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + +++SE P + + Sbjct: 142 -----------------------HILKTRERLNKILSERTGQPIEVIQRDTDRDNYMSAE 178 Query: 217 EAKKVGLIDVVG 228 +AK GLID + Sbjct: 179 DAKAYGLIDEIM 190 >gi|152978444|ref|YP_001344073.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus succinogenes 130Z] gi|171704240|sp|A6VME1|CLPP_ACTSZ RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|150840167|gb|ABR74138.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Actinobacillus succinogenes 130Z] Length = 194 Score = 40.8 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED+ ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 VIFLSGEVEDNMANLIVAQLLFLESEDPDKDINLYINSPGGSVTAGMAIYDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A + A I+ Sbjct: 89 RTLC-------IGQACSMGAFLLAGGAAGKRAALPNARVMIHQPLGGFRGQASDIQIHAQ 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +K + + + + P ++ +D + + Sbjct: 142 EILKIKHTLNERLAFHS-----------------------GQPLEQIEKDTDRDNFMSAE 178 Query: 217 EAKKVGLIDVV 227 EA+ GLID V Sbjct: 179 EAQNYGLIDSV 189 >gi|317486004|ref|ZP_07944859.1| Clp protease [Bilophila wadsworthia 3_1_6] gi|316922777|gb|EFV44008.1| Clp protease [Bilophila wadsworthia 3_1_6] Length = 207 Score = 40.8 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 25/189 (13%), Positives = 53/189 (28%), Gaps = 32/189 (16%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 + ++ + D + + ++SPGGS AG AI+ + + + + A Sbjct: 49 ICAQLLFLESQDPEKEIYLYINSPGGSVTAGMAIYDTMNYITPPIATVCMGRAASMGAFL 108 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + + A S V L + +D Sbjct: 109 LSAGQKGMRYALPNSQVMIHQPLGGFQGQATDIDIHARE--------------------- 147 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV-VGGQ 230 + L+++ P +K T A+ GL+D + + Sbjct: 148 ---------ILRMRETLNGLLAKHTGQPIEKIAQDTERDNFMTAEMAQAYGLVDKVLASR 198 Query: 231 EEVWQSLYA 239 ++ Sbjct: 199 RDLLAEKSE 207 >gi|262066529|ref|ZP_06026141.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium periodonticum ATCC 33693] gi|294783780|ref|ZP_06749104.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium sp. 1_1_41FAA] gi|291379763|gb|EFE87281.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium periodonticum ATCC 33693] gi|294480658|gb|EFG28435.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium sp. 1_1_41FAA] Length = 193 Score = 40.8 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 55/179 (30%), Gaps = 29/179 (16%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + +I ++ + +D +I+ ++SPGGS G AI+ + +K + + Sbjct: 40 ANSIIAQLLYLESEDPEKDIIMYINSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMG 99 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L S A A E S + L D Sbjct: 100 AFLLSSGAKGKRFALENSRIMIHQPLISGGLKGQATDI---------------------- 137 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227 + + + L++ + ++ + EA + GLID V Sbjct: 138 ------SIHANELLKIKDRLAELLARNTGKTKEQILNDTERDNYLSSEEAVRYGLIDSV 190 >gi|167623574|ref|YP_001673868.1| hypothetical protein Shal_1643 [Shewanella halifaxensis HAW-EB4] gi|167353596|gb|ABZ76209.1| protein of unknown function DUF107 [Shewanella halifaxensis HAW-EB4] Length = 503 Score = 40.8 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 77/222 (34%), Gaps = 22/222 (9%) Query: 29 SHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDD-----SATALIVSLSSPGGSAY 81 P V +A G I S+ L + IER + + +++ + +PGG Sbjct: 35 ESAITARPQVLVLAFEGAIGPATSEYLTQGIERANVNAALGNGEIELIVIVMDTPGGLVS 94 Query: 82 AGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 + I ++I + AASAG I A +I AE + +G+ + P Sbjct: 95 SLRDINQSILNSSVPIACLVAPPGARAASAGTYILYACHIAAMAEATTLGAATPVSIGPG 154 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 P K+ P+ S + K + + + RN Sbjct: 155 SAPTPAPKQDPKD-----DDKSAPATPSAMEKKILNDSIAYIRALAQL------RGRNEQ 203 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + + + + T EA ++ +I+++ + + + L Sbjct: 204 WAEL-AVKEAATLTANEALEMNVINLI--SPDAPRLVAELTG 242 >gi|322381666|ref|ZP_08055631.1| ATP-dependent Clp protease proteolytic subunit-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154378|gb|EFX46689.1| ATP-dependent Clp protease proteolytic subunit-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 238 Score = 40.8 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 61/195 (31%), Gaps = 43/195 (22%) Query: 41 IAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 I I G I + E ++R+ + + + ++SPGGS + G AI ++ Sbjct: 11 IFIYGDIVTYQWDEVDTSATSFKEDLDRLGD---LSTINLYINSPGGSVFEGIAIHNMLK 67 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + K V V +AAS +I+ A + + S++ Sbjct: 68 RHKAN--VHVHVDALAASIASVIAMAGDPFYMPKNSMLMIHN------------------ 107 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + + + V L + +K + D Sbjct: 108 ----------PWIFAWGNASEMRKIADDLDRIGNSSKQVYLQKAGDKLSDEKLQDMLDAE 157 Query: 212 IW-TGAEAKKVGLID 225 W + EA + GL D Sbjct: 158 TWLSADEAFEYGLCD 172 >gi|282921759|ref|ZP_06329476.1| phage protease [Staphylococcus aureus A9765] gi|282594021|gb|EFB99010.1| phage protease [Staphylococcus aureus A9765] Length = 257 Score = 40.8 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 70/221 (31%), Gaps = 38/221 (17%) Query: 41 IAIRGQIEDSQELIERI------ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I I G I + + ++ + + V ++S GGS + G AI+ ++ Sbjct: 20 IFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHP 79 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + V +AAS +I+ + + I + S + Sbjct: 80 AKIN--IYVDALAASIASVIAMSGDTIFMHKNSFLMIHN--------------------- 116 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213 + + + + + +++N+ ++ + D W Sbjct: 117 --------SWVMTVGNAEELRKTADLLDKTDAVSNSAYLDKAKNLDQEQLKQMLDAETWL 168 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 T EA GLID V G E+ S+ + +D Sbjct: 169 TAEEALSFGLIDEVLGANEIAASISKEQYKRFENVPEDLKK 209 >gi|170719455|ref|YP_001747143.1| hypothetical protein PputW619_0268 [Pseudomonas putida W619] gi|169757458|gb|ACA70774.1| protein of unknown function DUF107 [Pseudomonas putida W619] Length = 449 Score = 40.8 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 69/233 (29%), Gaps = 24/233 (10%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPG 77 L V+ ++ + + ++I I + L+ +++ A +++ + +PG Sbjct: 10 LLVLMLGFAPGSQAAPGAIWVLSIDDAIGPASADYLMRGLDQARE-QGAQLVVIRMDTPG 68 Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ 137 G A I + I + A AA Sbjct: 69 GLDSAMRQIIKVILA---------------SPVPVATFVAPGGARAASAGTYILYASHVA 113 Query: 138 YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 L + V+ P N Q + + ++R +++ R Sbjct: 114 AMAPGTNL----GAATPVQVGSPTGAPKDDKAKNDTNEQALARKQVNDAAAYIRGLAQLR 169 Query: 198 NIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRK 248 D + + + +EA K +ID V ++ + L + + + Sbjct: 170 GRNADWAEKAVREAVSLSASEAFKQKVIDHVANDLPDLLRQLDGKTLIAADQP 222 >gi|15966135|ref|NP_386488.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium meliloti 1021] gi|307305688|ref|ZP_07585435.1| Endopeptidase Clp [Sinorhizobium meliloti BL225C] gi|307317691|ref|ZP_07597130.1| Endopeptidase Clp [Sinorhizobium meliloti AK83] gi|7387587|sp|Q9X7L1|CLPP3_RHIME RecName: Full=ATP-dependent Clp protease proteolytic subunit 3; AltName: Full=Endopeptidase Clp 3 gi|4539549|emb|CAB39976.1| CLP protease proteolytic subunit [Sinorhizobium meliloti] gi|15075405|emb|CAC46961.1| CLP protease proteolytic subunit [Sinorhizobium meliloti 1021] gi|306896849|gb|EFN27596.1| Endopeptidase Clp [Sinorhizobium meliloti AK83] gi|306902391|gb|EFN32987.1| Endopeptidase Clp [Sinorhizobium meliloti BL225C] Length = 195 Score = 40.8 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 38/195 (19%) Query: 41 IAIRGQIED--SQELIERI--ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 I I G I +Q++ ++ + DD + ++SPGG +G++I I+ VK + Sbjct: 30 IFIYGTITQELAQKVCSQLVALAAASDDDIR---LFVNSPGGHVESGDSIHDMIKFVKPK 86 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 I +A A ++ + + + ++ Sbjct: 87 VWTIGTGWVASAGALIYVAAPKEQRLCLPNTRFLLHQPSGGTRGMASDIE---------- 136 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG- 215 + + R+ SE+ P DK +D W G Sbjct: 137 --------------------IQAREIIKMNERLNRIFSEATGQPVDKIAKDTDRDYWLGA 176 Query: 216 AEAKKVGLIDVVGGQ 230 EAK GL+ + Sbjct: 177 EEAKAYGLVSRIVTS 191 >gi|330444244|ref|YP_004377230.1| Clp protease [Chlamydophila pecorum E58] gi|328807354|gb|AEB41527.1| Clp protease [Chlamydophila pecorum E58] Length = 194 Score = 40.8 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 29/180 (16%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + + I ++ + D + ++SPGGS AG AI+ I+ + + + + Sbjct: 36 SAADAIRKLWYLEMTDPGKPITFVINSPGGSVDAGFAIWDQIKMLTSPVTTVVTGLAASM 95 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 + + A A S + P D + + + Sbjct: 96 GSVLSLCAAPGRRFATPHSRIMIHQPSIGGPITGQATDLDIHAREIL------------- 142 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 + V + E+ + P D D +W T EAK GL+D + Sbjct: 143 ---------------KTKARIVDVYVEATHQPRDVIEKAIDRDMWMTADEAKDFGLLDGI 187 >gi|259416932|ref|ZP_05740852.1| Clp protease [Silicibacter sp. TrichCH4B] gi|259348371|gb|EEW60148.1| Clp protease [Silicibacter sp. TrichCH4B] Length = 218 Score = 40.8 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + + ++SPGG +G +I+ +Q +K + Sbjct: 46 IIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 105 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + + S V Y Sbjct: 106 STLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMVHQPSGGYQGQ---------------- 149 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + YD L + Sbjct: 150 --------------ATDIMIHAEETLKLKRRLNEIYVKHTGQDYDTIEKALERDNFMSPE 195 Query: 217 EAKKVGLIDVV 227 +AK+ GLID + Sbjct: 196 QAKEFGLIDEI 206 >gi|237739236|ref|ZP_04569717.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp. 2_1_31] gi|229422844|gb|EEO37891.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp. 2_1_31] Length = 193 Score = 40.8 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 55/179 (30%), Gaps = 29/179 (16%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + +I ++ + +D +I+ ++SPGGS G AI+ + +K + + Sbjct: 40 ANSIIAQLLYLESEDPEKDIIMYINSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMG 99 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L S A A E S + L D Sbjct: 100 AFLLSSGAKGKRFALENSRIMIHQPLISGGLKGQATDI---------------------- 137 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227 + + + L++ + ++ + EA + GLID V Sbjct: 138 ------SIHANELLKIKDRLAELLARNTGKTKEQILNDTERDNYLSSEEAVRYGLIDSV 190 >gi|332358291|gb|EGJ36117.1| ATP-dependent Clp protease, protease subunit [Streptococcus sanguinis SK355] Length = 196 Score = 40.8 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 61/192 (31%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D V+ + Sbjct: 87 QTIVMGVAASMGTIIASSGAKGKRFMLPNAEYLIHQPMGGAGSGTQQTDMAIVAEHLL-- 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + ++++E+ ++ ++ W + Sbjct: 145 --------------------------RTRNTLEKILAENSGKSVEQIHKDAERDYWMSAQ 178 Query: 217 EAKKVGLIDVVG 228 E + G ID + Sbjct: 179 ETLEYGFIDEIM 190 >gi|203284513|ref|YP_002222253.1| ATP-dependent Clp protease proteolytic component [Borrelia duttonii Ly] gi|203288047|ref|YP_002223062.1| ATP-dependent Clp protease proteolytic component [Borrelia recurrentis A1] gi|201083956|gb|ACH93547.1| ATP-dependent Clp protease proteolytic component [Borrelia duttonii Ly] gi|201085267|gb|ACH94841.1| ATP-dependent Clp protease proteolytic component [Borrelia recurrentis A1] Length = 199 Score = 40.8 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D +I ++ + +DS + + ++SPGGS AG AI+ +Q +K Sbjct: 35 IIFLSGEINDLRGDTVIAQLLFLESEDSKKDIYLYINSPGGSITAGLAIYDTMQYIKPDV 94 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 I + +A L A + S + Sbjct: 95 RTICIGQAASMAAFLLAGGAVGKRESLSYSRIMIHQPWG 133 >gi|329122525|ref|ZP_08251109.1| ATP-dependent Clp protease, protease subunit [Haemophilus aegyptius ATCC 11116] gi|327473154|gb|EGF18577.1| ATP-dependent Clp protease, protease subunit [Haemophilus aegyptius ATCC 11116] Length = 211 Score = 40.8 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 47 VIFLSGEVEDRMANLIVAQLLFLESEDPTKDINIYINSPGGSVTAGMAIYDTMQFIKPDI 106 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A + V L + Sbjct: 107 RTLCIGQACSMGAFLLAGGTAGKRAALPNARVMIHQPLGGFRGQ---------------- 150 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +Q+ + H ++ ++ +D + + Sbjct: 151 --------------ASDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDTDRDNFMSAE 196 Query: 217 EAKKVGLIDVV 227 EA+ GL+D V Sbjct: 197 EAQVYGLVDEV 207 >gi|308069047|ref|YP_003870652.1| ATP-dependent Clp protease proteolytic subunit (endopeptidase Clp) [Paenibacillus polymyxa E681] gi|305858326|gb|ADM70114.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) [Paenibacillus polymyxa E681] Length = 194 Score = 40.8 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 31/182 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + +I ++ ++ +D + + ++SPGGS AG AI+ +Q +K I + Sbjct: 42 ANSIIAQLLFLAAEDPEKEIYMYINSPGGSTSAGFAIYDTMQYIKPDVHTICTGFAASFG 101 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L++ A A S + Sbjct: 102 AILLLAGAKGKRSALPNSEIMIHQPHGGAQGQ---------------------------- 133 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228 + + + + R+ +E ++K D + + EA + G+ID V Sbjct: 134 --ASDIAISAKRILWTREKATRITAERTGQSFEKVEKDMDRDFYMSAQEALEYGVIDQVI 191 Query: 229 GQ 230 Sbjct: 192 TS 193 >gi|283852376|ref|ZP_06369646.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio sp. FW1012B] gi|283572224|gb|EFC20214.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio sp. FW1012B] Length = 204 Score = 40.8 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 54/185 (29%), Gaps = 31/185 (16%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 + ++ + +D + + ++SPGGS AG AI+ +Q V + + + A Sbjct: 44 ICAQLLFLESEDPEKEIFMYINSPGGSVTAGLAIYDTMQYVLPKVSTLCMGQAASMGALL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A+ + A S + + + +D I + Sbjct: 104 LCAGATGMRYALPHSRIMIHQPMGGFQGQATDIDIHAREILRI----------------- 146 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231 +++ +K EA GLID V Sbjct: 147 -------------RESLNEIMARHTGQDIEKVRVDTDRDYFMNADEAVTYGLIDKVLTSR 193 Query: 232 EVWQS 236 E Sbjct: 194 EPVAK 198 >gi|291298893|ref|YP_003510171.1| endopeptidase Clp [Stackebrandtia nassauensis DSM 44728] gi|290568113|gb|ADD41078.1| Endopeptidase Clp [Stackebrandtia nassauensis DSM 44728] Length = 210 Score = 40.8 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 62/185 (33%), Gaps = 30/185 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + DD + + ++SPGGS A AI+ +Q V+ + + Sbjct: 46 TSANDIMSQLLVLEGDDPERDIEMYINSPGGSLTALMAIYDTMQYVRPDIRTVCMGQAAS 105 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + A +A S V + Y + ++ Sbjct: 106 AAAILLAAGAKGKRLALPNSRVIIHQPATEGTYGQASDMEIQAR---------------- 149 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226 + ++++ DK + +I EAK+ G++D Sbjct: 150 -------------EIMRMRDQMEKVLARHTGQELDKVRRDIERDKILNADEAKEYGIVDT 196 Query: 227 VGGQE 231 V Sbjct: 197 VMEYR 201 >gi|224373739|ref|YP_002608111.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nautilia profundicola AmH] gi|223589486|gb|ACM93222.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nautilia profundicola AmH] Length = 196 Score = 40.8 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I ++G+I D S ++ ++ + ++ + + ++SPGG +G AI+ + +K Sbjct: 30 IIMLQGEINDHVSSIIVAQMLFLEAENPEKDIYLYINSPGGVVTSGMAIYDTMNYIKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S A A + + L ++ Sbjct: 90 VTICMGQAASMGAFLLSSGAKGKRFALPHARIMIHQPLGGAQGQATDIEIHAKE------ 143 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + ++++E+ K ++ + + Sbjct: 144 ------------------------ILRMKKELNKILAENTGQSVRKIERDTERDFFMSAE 179 Query: 217 EAKKVGLIDVV 227 EA K GLID V Sbjct: 180 EAMKYGLIDKV 190 >gi|319946500|ref|ZP_08020736.1| ATP-dependent Clp protease, protease subunit [Streptococcus australis ATCC 700641] gi|319747331|gb|EFV99588.1| ATP-dependent Clp protease, protease subunit [Streptococcus australis ATCC 700641] Length = 196 Score = 40.8 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 31/193 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 27 IIMVTGPVEDQMANSIIAQLLFLDAQDNTKDIYMYVNTPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + +K+ Sbjct: 87 QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 H ++++E+ K ++ W T Sbjct: 147 ----------------------------RHRLEKILAENSGQTLKKIHADAERDNWMTAE 178 Query: 217 EAKKVGLIDVVGG 229 E G ID + Sbjct: 179 ETLAYGFIDEIMS 191 >gi|213692575|ref|YP_002323161.1| Endopeptidase Clp [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524036|gb|ACJ52783.1| Endopeptidase Clp [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458727|dbj|BAJ69348.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 233 Score = 40.8 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 30/181 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D +++ ++SPGGS A AI+ +Q +K + + Sbjct: 77 ASADDVMAQLLVLESQDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAAS 136 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L S + + V + K Sbjct: 137 AAAILLASGTEGKRLMLPNARVLIHQPAIDQGFGKA------------------------ 172 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226 +++ + W +++ +K + T EAK+ G++D Sbjct: 173 -----TEIEIQAKEMLRMREWLEETLAKHTGQDVEKIRRDIEVDTFLTAPEAKEYGIVDE 227 Query: 227 V 227 V Sbjct: 228 V 228 >gi|195118808|ref|XP_002003928.1| GI20379 [Drosophila mojavensis] gi|193914503|gb|EDW13370.1| GI20379 [Drosophila mojavensis] Length = 223 Score = 40.8 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 65/184 (35%), Gaps = 7/184 (3%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D S ++ ++ + ++ + + ++SPGG AG AI+ +Q VK Sbjct: 24 IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 83 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV----LFQYPYVKPFLDKLGVSIK 153 + + L + A + + + + Q + +++ + Sbjct: 84 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKR 143 Query: 154 SVKSSPMKAEPSPFSEV-NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 + + +K + + E+ + ++ + V E + SDG Sbjct: 144 QLTNIYVKHAKNSYDEMCSRMERDHFMTPEEAKTLGIIDHVLEHPPETVSDSGPTSDGGP 203 Query: 213 WTGA 216 TG Sbjct: 204 ATGK 207 >gi|229083044|ref|ZP_04215449.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus Rock4-2] gi|228700261|gb|EEL52842.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus Rock4-2] Length = 234 Score = 40.8 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 63/195 (32%), Gaps = 33/195 (16%) Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116 I + D + L+VS++SPGG + G I+ A++ V +AASA +I+ Sbjct: 9 ISKALDDANGDDLVVSINSPGGYVHEGSEIYTALKNYPGHVEVQIVG--LAASAASVIAM 66 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 A++ + + T+ + +++ A Sbjct: 67 AADKVRISPTAQIMIHNASM-------------------------WNGGDHRDMSKAAEM 101 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-AEAKKVGLIDVVGGQEEVWQ 235 + + ++ ++ L + W G +A + +D + E + Sbjct: 102 LKTTDRAIVNAYVIKS-----GKSEEELLNMMAEETWMGPQQALENNFVDEIMFMENPVK 156 Query: 236 SLYALGVDQSIRKIK 250 + + + Sbjct: 157 MTASTATVTMLPQKV 171 >gi|45357586|ref|NP_987143.1| hypothetical protein MMP0023 [Methanococcus maripaludis S2] gi|45047146|emb|CAF29579.1| conserved hypothetical protein [Methanococcus maripaludis S2] Length = 274 Score = 40.8 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 IEDS+E++ I D ++ +PGG A E I A+++ K + VI + Sbjct: 66 TIEDSEEILRAIRMTPEDMPIDLIL---HTPGGLVLASEQIAIALKEHKAKTTVIIPHYA 122 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 M+ G LI+ A++ I+ + +++G + ++ + Sbjct: 123 MSG--GSLIALAADEIIIDKNAVMGPVDPQIGQYPAASIINAINTKY 167 >gi|254467045|ref|ZP_05080456.1| Clp protease [Rhodobacterales bacterium Y4I] gi|206687953|gb|EDZ48435.1| Clp protease [Rhodobacterales bacterium Y4I] Length = 202 Score = 40.8 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 60/190 (31%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + + ++SPGG +G +I+ +Q +K + Sbjct: 30 IIFVNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + S V + Sbjct: 90 STLVIGQAASMGSLLLTAGEKGMRFSLPNSRVMVHQPSGGFQG----------------- 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + +E K + + ++ V L + E Sbjct: 133 --QATDIMIHAEETLKLKKRLNEIYVKHTGQDYETV----------VNALERDNFMSPEE 180 Query: 218 AKKVGLIDVV 227 AK GLID + Sbjct: 181 AKAFGLIDEI 190 >gi|21910478|ref|NP_664746.1| putative ClpP protease ATP-dependent protease proteolytic subunit - phage associated [Streptococcus pyogenes MGAS315] gi|28876226|ref|NP_795465.1| putative ClpP protease ATP-dependent protease proteolytic subunit [Streptococcus pyogenes phage 315.2] gi|28895825|ref|NP_802175.1| ClpP-like protease [Streptococcus pyogenes SSI-1] gi|21904677|gb|AAM79549.1| putative ClpP protease ATP-dependent protease proteolytic subunit - phage-associated [Streptococcus pyogenes MGAS315] gi|28811074|dbj|BAC64008.1| putative ClpP-like protease [Streptococcus pyogenes SSI-1] Length = 221 Score = 40.8 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 34/253 (13%), Positives = 85/253 (33%), Gaps = 48/253 (18%) Query: 40 RIAIRGQIE--DSQELIE-----------RIERISRDDSATALIVSLSSPGGSAYAGEAI 86 RI ++G + +SQE+ + IE++ D+S +++ ++S GG G I Sbjct: 4 RINLKGPLISNNSQEVYDYYGMEAVSAKSIIEKLPEDNS--DIVLEVNSNGGLVTVGSEI 61 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 + A++ K + +A++ ++ ++ +V Sbjct: 62 YTALRNYKGKVTAEITGMAASAASVAVMGADKVVMSPTAQMMVH---------------- 105 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 KA + + + + + S V+++ + + Sbjct: 106 --------------KALFNWVAGNSDDLDKASNALKSSDKAIVNAYVAKTGKSEDEIMDL 151 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 + + + EA + G D V E S+ + I D+ + ++ N+ Sbjct: 152 MRNETFMSAQEAVENGFADEVMTF-EAVASI--DSMMLPQAVIDDYYASRTKRKQEISNM 208 Query: 267 SISSLLEDTIPLM 279 + E+ + + Sbjct: 209 LLEIEKEEILQGL 221 >gi|317470420|ref|ZP_07929809.1| Clp protease [Anaerostipes sp. 3_2_56FAA] gi|316902100|gb|EFV24025.1| Clp protease [Anaerostipes sp. 3_2_56FAA] Length = 202 Score = 40.8 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 61/186 (32%), Gaps = 28/186 (15%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + D + + ++SPGGS AG AI+ ++ ++ I + A Sbjct: 44 IVAQMLFLEAQDPGRDIQLYINSPGGSVTAGFAIYDTMKYIQCDVATICVGLAASFGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L +A + + ++ + + Sbjct: 104 LAGGTQGKRMALPNAEIMIHQPAIHGNGIQGPASDIKI---------------------- 141 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231 M D + + R+++E+ ++ + EA K GLID V + Sbjct: 142 -----MSDYMQKNKQRLNRILAENTGRSIEEIERDTDRDHFMSAEEALKYGLIDSVISKR 196 Query: 232 EVWQSL 237 + Q L Sbjct: 197 QKKQHL 202 >gi|315221928|ref|ZP_07863839.1| Clp protease [Streptococcus anginosus F0211] gi|319939597|ref|ZP_08013956.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus anginosus 1_2_62CV] gi|315188894|gb|EFU22598.1| Clp protease [Streptococcus anginosus F0211] gi|319811186|gb|EFW07492.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus anginosus 1_2_62CV] Length = 196 Score = 40.8 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 24/192 (12%), Positives = 58/192 (30%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 27 IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYINTPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + + Sbjct: 87 QTIVMGMAASMGTIIASSGAKGKRFMLPNAEYLIHQPMGGTGSGTQQTDMAIAAEHLL-- 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + ++++++ + ++ W + Sbjct: 145 --------------------------KTRNNLEKILADNSGKTIKQVHKDAERDYWMSAQ 178 Query: 217 EAKKVGLIDVVG 228 E G ID + Sbjct: 179 ETLDYGFIDEIM 190 >gi|302391290|ref|YP_003827110.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acetohalobium arabaticum DSM 5501] gi|302203367|gb|ADL12045.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acetohalobium arabaticum DSM 5501] Length = 199 Score = 40.8 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 67/201 (33%), Gaps = 35/201 (17%) Query: 35 SPHVARI--AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 + I I +I + +I ++ + +D + + ++SPGGS + AI+ +Q Sbjct: 27 KDRIVFIGSPINDEIANL--VIAQLLFLEAEDPDKDIYIYINSPGGSVTSALAIYDTMQY 84 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 +K I+ +A A L S A A S + ++ Sbjct: 85 IKPDVSTISMGLAASAGALLLASGAEGKRYALPYSRIMIHQPAGGAEGRAADIE------ 138 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 + + ++++ P +K D Sbjct: 139 ------------------------IQAQEILDLRKILNNILADHTGQPLEKIEEDVDRDF 174 Query: 213 W-TGAEAKKVGLIDVVGGQEE 232 + + +AK+ G+ID V ++E Sbjct: 175 FMSSEDAKEYGIIDEVISRQE 195 >gi|322418659|ref|YP_004197882.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp. M18] gi|320125046|gb|ADW12606.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp. M18] Length = 199 Score = 40.8 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 64/195 (32%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D+ +I ++ + +D + + ++SPGG AG AI+ ++ +K Sbjct: 28 IIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMRYIKAPV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + S + L + Sbjct: 88 STICIGQAASMGAFLLSGGEKGKRFSLANSRIMIHQPLGGFQGQ---------------- 131 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + L++E ++K ++ + +G Sbjct: 132 --------------ATDIHIHAKEILRMKDQLNELLAEHTGQSFEKVAADTERDYFMSGE 177 Query: 217 EAKKVGLIDVVGGQE 231 EAK G+ID + + Sbjct: 178 EAKSYGIIDAIVTRN 192 >gi|13476994|ref|NP_108564.1| ATP-dependent Clp protease proteolytic subunit [Mesorhizobium loti MAFF303099] gi|18202642|sp|Q982V6|CLPP2_RHILO RecName: Full=ATP-dependent Clp protease proteolytic subunit 2; AltName: Full=Endopeptidase Clp 2 gi|14027757|dbj|BAB54350.1| ATP-dependent Clp proteinase [Mesorhizobium loti MAFF303099] Length = 209 Score = 40.8 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 59/195 (30%), Gaps = 31/195 (15%) Query: 40 RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G +ED + ++ + ++ + + ++SPGG +G AI+ +Q +K Sbjct: 37 IIFITGPVEDGMATLVCAQLLFLEAENPKKEINLYINSPGGVVTSGMAIYDTMQFIK--- 93 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 A ++L + + + + + Sbjct: 94 -------------------------PAVSTLCIGQAASMGSLLLTAGHKDMRFATPNARI 128 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + + M D+V V + + L T E Sbjct: 129 MVHQPSGGFQGQASDIERHAM-DIVKLKRRLNEVYVKHTGKSYEEIERTLDRDHFMTADE 187 Query: 218 AKKVGLIDVVGGQEE 232 AK GLID V E Sbjct: 188 AKDFGLIDKVISSRE 202 >gi|296165576|ref|ZP_06848102.1| enoyl-CoA hydratase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899077|gb|EFG78557.1| enoyl-CoA hydratase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 522 Score = 40.8 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 4/94 (4%) Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 +L T EA +GLI V +E+ L + + + + K + Sbjct: 418 RQALRILLTNPTLTADEALDIGLITEVVDDDELLNRAEELAAELATLPNRALSATKRLVW 477 Query: 261 CDLKNLSISSLLEDTIPLMK----QTKVQGLWAV 290 L + L E+ + + ++GL AV Sbjct: 478 SGLGSSVEERLAEEARTVSELSGTADALEGLRAV 511 >gi|183601061|ref|ZP_02962554.1| hypothetical protein PROSTU_04684 [Providencia stuartii ATCC 25827] gi|188019401|gb|EDU57441.1| hypothetical protein PROSTU_04684 [Providencia stuartii ATCC 25827] Length = 206 Score = 40.8 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIQLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + S V L Y Sbjct: 102 STICMGQACSMGSFLLAAGTKGKRFCLPNSRVMIHQPLGGYQGQ---------------- 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 +Q+ + L++ ++ R + Sbjct: 146 --------------ATDIQIHAQEILKVKTRMNELMALHTGKSVEEINRDTERDRFLSAD 191 Query: 217 EAKKVGLIDVV 227 EAK+ GL+D + Sbjct: 192 EAKEYGLVDHI 202 >gi|52079942|ref|YP_078733.1| ATP-dependent Clp protease proteolytic subunit (class III heat-shock protein) [Bacillus licheniformis ATCC 14580] gi|52785314|ref|YP_091143.1| hypothetical protein BLi01550 [Bacillus licheniformis ATCC 14580] gi|52003153|gb|AAU23095.1| ATP-dependent Clp protease proteolytic subunit (class III heat-shock protein) [Bacillus licheniformis ATCC 14580] gi|52347816|gb|AAU40450.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 248 Score = 40.8 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 39/275 (14%), Positives = 85/275 (30%), Gaps = 45/275 (16%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSP 76 W N I I +I +Q E ++ + +AL + ++SP Sbjct: 7 FWEIKAAKNDAKTGEIYIYSEISSAQFWGDEVTTQTFKEDLDGLGE---VSALNIYINSP 63 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GGS + G +I+ I++ + V V +AAS +I+ + + I +++ Sbjct: 64 GGSVFEGNSIYNIIKRH--KAHVNVYVDGLAASIASVIAMSGDAIFMPANAMMMIHNPWT 121 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 L K + ++ L Sbjct: 122 VAQGNAEELRKQADDMDRIRE----------------------------SLIEAYLGKAG 153 Query: 197 RNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYAL--GVDQSIRKIKDWN 253 + D+ + L D W T E ++GL D + + ++ + Sbjct: 154 EKLNRDRLIELMDAETWLTAQECLELGLCDSIEAPSAAVAKVDTQLFAKYRNTPESLLNQ 213 Query: 254 PPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLW 288 ++ + + L L+ + + + + G+ Sbjct: 214 TKEDEKQAEKERLFREQLIAEAQTNLLKLQNGGII 248 >gi|222100633|ref|YP_002535201.1| periplasmic serine protease [Thermotoga neapolitana DSM 4359] gi|221573023|gb|ACM23835.1| periplasmic serine protease [Thermotoga neapolitana DSM 4359] Length = 327 Score = 40.4 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 4/150 (2%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+E++ I+ D +I +PGG A E I RA++K K + H Sbjct: 115 IEDSEEVLRAIKLTPEDMPIDLII---HTPGGLVLAAEQIARALKKH-KGKVTVFVPHYA 170 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + A +++ L + P + V + Sbjct: 171 MSGGTLIALAADEVVMDENAVLGPLDPQIGNMPAPSILAAVRKKDVNEVDDQTLILADIA 230 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + + + + D + ++E Sbjct: 231 EKAIRQIKEFVTEILKDKMPEEKAKEIAEK 260 >gi|268592036|ref|ZP_06126257.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Providencia rettgeri DSM 1131] gi|291312428|gb|EFE52881.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Providencia rettgeri DSM 1131] Length = 206 Score = 40.4 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K Sbjct: 42 IIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + S V L Y ++ Sbjct: 102 STICMGQACSMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQASDIEIHAQE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + L++ ++ R + Sbjct: 156 ------------------------ILKVKSRMNELMALHTGKSIEEITRDTERDRFLSAN 191 Query: 217 EAKKVGLIDVV 227 EAK+ GL+D + Sbjct: 192 EAKEYGLVDQI 202 >gi|331090536|ref|ZP_08339389.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae bacterium 2_1_46FAA] gi|330405879|gb|EGG85407.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae bacterium 2_1_46FAA] Length = 193 Score = 40.4 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 57/181 (31%), Gaps = 31/181 (17%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++ ++ + +D + + ++SPGGS AG AI+ +Q +K + Sbjct: 39 VSASIIVAQLLHLEAEDPEKDIQLYINSPGGSVSAGLAIYDTMQYIKCDVSTTCIGMAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L A A + + L Sbjct: 99 MGAFLLAGGAKGKRFALPNAEIMIHQPLGGAQGQ-------------------------- 132 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226 +Q+ + + + +++E +++ + EA++ GLID Sbjct: 133 ----ATEIQIAAEHILKTRQKLNEILAERTGKSFEQISADTERDNFMSAKEAEEYGLIDK 188 Query: 227 V 227 V Sbjct: 189 V 189 >gi|268680774|ref|YP_003305205.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sulfurospirillum deleyianum DSM 6946] gi|268618805|gb|ACZ13170.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sulfurospirillum deleyianum DSM 6946] Length = 196 Score = 40.4 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 24/190 (12%), Positives = 53/190 (27%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + ++ ++ + +D + + ++SPGG +G +I+ + +K Sbjct: 30 IIMLSGEINDVVASSIVAQLLFLEAEDPEKDIYLYINSPGGVITSGFSIYDTMNYIKPDI 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A + + L Sbjct: 90 STICIGQAASMGAFLLSAGTKGKRYALPNARIMIHQPLG--------------------- 128 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + + +L + E Sbjct: 129 GAQGQATDIEIQAKEILRMKQVLNEILAKNCNQKL--------PKIIKDTERDFFMSAEE 180 Query: 218 AKKVGLIDVV 227 + + GLID V Sbjct: 181 SCEYGLIDKV 190 >gi|170690196|ref|ZP_02881363.1| protein of unknown function DUF107 [Burkholderia graminis C4D1M] gi|170144631|gb|EDT12792.1| protein of unknown function DUF107 [Burkholderia graminis C4D1M] Length = 551 Score = 40.4 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 34/248 (13%), Positives = 66/248 (26%), Gaps = 33/248 (13%) Query: 25 FSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYA 82 S + V I + G I + ++ ++R + D A ++ L +PGG + Sbjct: 38 VSGQNAAAQALNSVVVIPVSGAIGPASADFIVRSLQRAA-DSHAQLAVLQLDTPGGLDTS 96 Query: 83 GEAIFRAI---------------QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 I +AI + + I +AA A A+ I Sbjct: 97 MRQIIKAILGSPVPVATFIAPSGARAASAGTYIVYASHIAAMAPGTNLGAATPIQMGIGG 156 Query: 128 LVGSIG------------VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 P S ++ A + + Sbjct: 157 TEPPGDGTPRLPGTGDRAPQAPAPGGSASGVGAASSASGASATTSPASTRSPTTLPLDTQ 216 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 ++R +++ R D + + T A+A ++D +V Sbjct: 217 STELRKQVHDAAAYIRGLAQMRGRNADWAERAVREAVSLTAADALAQHVVD--LNARDVP 274 Query: 235 QSLYALGV 242 L L Sbjct: 275 DLLRQLDG 282 >gi|57234158|ref|YP_181801.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative [Dehalococcoides ethenogenes 195] gi|57224606|gb|AAW39663.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative [Dehalococcoides ethenogenes 195] Length = 242 Score = 40.4 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 60/192 (31%), Gaps = 37/192 (19%) Query: 41 IAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 + + G+I D E+ ++ + + + ++SPGG +A I+ + + Sbjct: 23 LYLDGEISDETWFGDEVTPQLFKDELSSGDGNITLWINSPGGDVFAAAQIYNMLMDYPHD 82 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 V +AASA +I+ A + + +++ ++ Sbjct: 83 VTVKI--DALAASAASVIAMAGTKVCMSPVAMMMIHNPA------------------TIA 122 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215 + +N +M S + K L D W Sbjct: 123 IGDTEEMQKAIDMLNEVKESIMNAYEIKS------------GLSRHKISQLMDAETWMNA 170 Query: 216 AEAKKVGLIDVV 227 EA K+G D + Sbjct: 171 KEAVKLGFADEI 182 >gi|255080968|ref|XP_002504050.1| predicted protein [Micromonas sp. RCC299] gi|226519317|gb|ACO65308.1| predicted protein [Micromonas sp. RCC299] Length = 720 Score = 40.4 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 68/220 (30%), Gaps = 34/220 (15%) Query: 36 PHVARIAIRGQ------IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 VA I++ I + + +++ D A++++ S G G I + Sbjct: 5 DGVALISMSNPPVNALAIPVLEGIEAQVKAAQADSGVRAIVITGS--RGKFSGGFDITQL 62 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 + + + ++ ++ SI P V + Sbjct: 63 KARTEGK---------------------PVRNMSDFNGVLNSIVEAGPKPTVAAIENLAL 101 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 V + +P +++ +Q+ RLV ++ Sbjct: 102 GGGLEVAMACNARVATPKAQLGLPELQLGVIPGFGGTQRLPRLV-----GLPKALEMMLK 156 Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 + EA K+GL+D + +++ L D + ++I Sbjct: 157 SKPVKAEEALKLGLVDAIVPADQLIAKATQLAKDIADKRI 196 >gi|109899441|ref|YP_662696.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudoalteromonas atlantica T6c] gi|123064308|sp|Q15R46|CLPP_PSEA6 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|109701722|gb|ABG41642.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudoalteromonas atlantica T6c] Length = 212 Score = 40.4 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG AI+ + +K Sbjct: 38 VIFMVGQVEDHMANLIVAQMLFLEAENPEKDIFLYINSPGGSVTAGMAIYDTMNFIKPDV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A + V L + + I S+ Sbjct: 98 STVCIGQAASMGAFLLSGGAKGKRYCLPNARVMIHQPLGGFQGQASDFEIHAKEILSI-- 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 RL++ YDK + Sbjct: 156 ----------------------------KEKMNRLMAAHTGQDYDKVARDTDRDNFLSAQ 187 Query: 217 EAKKVGLIDVV 227 E+ GL+D V Sbjct: 188 ESVDYGLVDQV 198 >gi|225019943|ref|ZP_03709135.1| hypothetical protein CLOSTMETH_03897 [Clostridium methylpentosum DSM 5476] gi|224947307|gb|EEG28516.1| hypothetical protein CLOSTMETH_03897 [Clostridium methylpentosum DSM 5476] Length = 188 Score = 40.4 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + ++ D+ ++ ++ + D + + ++SPGGS +G AI+ + +K+ Sbjct: 24 IIMLSDEVNDATASLVVAQLLYLEAQDPEKDIQLYINSPGGSITSGMAIYDTMNYIKSDV 83 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A +A S + Sbjct: 84 STICIGMAASMGAFLLSAGAKGKRLALPNSEIMIHQPSGGAQGQ---------------- 127 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + + + ++++++ P +K + Sbjct: 128 --------------ATDINIQAERIIKMKKQLNQMLADATGQPLEKIERDTERDNFMSAQ 173 Query: 217 EAKKVGLIDVV 227 EA + GL+D V Sbjct: 174 EACEYGLVDKV 184 >gi|113970830|ref|YP_734623.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp. MR-4] gi|123029527|sp|Q0HHA1|CLPP_SHESM RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|113885514|gb|ABI39566.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp. MR-4] Length = 202 Score = 40.4 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 50/178 (28%), Gaps = 31/178 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + + + + ++SPGGS AG AI+ +Q +K + + A Sbjct: 52 IVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFL 111 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L S V L + + + + + K Sbjct: 112 LAGGEKGKRFCLPNSRVMIHQPLG---GFQGQASDIAIHAQEILGIKHKLNLML------ 162 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG 229 SE P + + +A + GL+D V Sbjct: 163 ---------------------SEHTGQPLELIERDTDRDNFMSATQAVEYGLVDAVMT 199 >gi|332981667|ref|YP_004463108.1| hypothetical protein Mahau_1088 [Mahella australiensis 50-1 BON] gi|332699345|gb|AEE96286.1| protein of unknown function DUF107 [Mahella australiensis 50-1 BON] Length = 432 Score = 40.4 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 63/130 (48%), Gaps = 5/130 (3%) Query: 8 IKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERISRDDS 65 +K ++ + + + S V I +G++ + + IE+ + + Sbjct: 1 MKKLLIITAYMVILSAVISTPLSALAADNIVYVIPAKGEVTPAMAGFVSSSIEQAGK-EG 59 Query: 66 ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 A+A+I+ + +PGG + I AI + + PVI+ V++ A SAG LI+ A++ +V A Sbjct: 60 ASAIILDIDTPGGYVQSAMDIKDAI--MDSPVPVISYVNKRALSAGVLIAIAADHLVMAP 117 Query: 126 TSLVGSIGVL 135 S +G+ + Sbjct: 118 ASHMGAAETI 127 >gi|307151649|ref|YP_003887033.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece sp. PCC 7822] gi|306981877|gb|ADN13758.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece sp. PCC 7822] Length = 228 Score = 40.4 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 69/197 (35%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + I+D + ++ ++ + +D + + ++SPGGS YAG AI+ +Q+++ Sbjct: 52 IVFLGTAIDDNVADSIVAQLLYLDAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDV 111 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L +A ++ + + +D I + Sbjct: 112 VTICFGLAASMGAFLLSGGTKGKRMALPSARIMIHQPIGGAQGQAVEIDIQAKEILYI-- 169 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-A 216 L++E PY++ ++ + Sbjct: 170 ----------------------------KQRLNSLLAEHTGQPYERIAEDTERDFYMSVH 201 Query: 217 EAKKVGLIDVVGGQEEV 233 +AK GLID V + E+ Sbjct: 202 DAKDYGLIDQVISRSEL 218 >gi|224534182|ref|ZP_03674761.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia spielmanii A14S] gi|224514543|gb|EEF84858.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia spielmanii A14S] Length = 197 Score = 40.4 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + +I ++ + +DS + + L+SPGGS AG AI+ +Q +K Sbjct: 33 IIFLSGEINDLKADTVIAQLLFLESEDSNKDIYLYLNSPGGSITAGLAIYDTMQYIKPDV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 I + A L + A + S + Sbjct: 93 RTICIGQAASMGAFLLAAGAKGKRESLTYSRIMIHQPWG 131 >gi|296123571|ref|YP_003631349.1| endopeptidase Clp [Planctomyces limnophilus DSM 3776] gi|296015911|gb|ADG69150.1| Endopeptidase Clp [Planctomyces limnophilus DSM 3776] Length = 227 Score = 40.4 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 23/186 (12%), Positives = 53/186 (28%), Gaps = 8/186 (4%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D+ ++ ++ + ++ + ++SPGGS A AI+ +Q ++ Sbjct: 37 IIFLDGPIHDASANLIVMKLLFLQAENRHQDIHFYVNSPGGSVTATMAIYDTMQFLQCDI 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL----FQYPYVKPFLDKLGVSIK 153 + A L V Q ++ + + + Sbjct: 97 ATYCVGLAASGGAIVLAGGTKGKRYCLPHGKVMIHQPYGEVGGQVSDIEIQARDILDTRR 156 Query: 154 SVKSSPMKAEPSPFSEV-NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 + P + + + + V V + P + + Sbjct: 157 VLNEILAHHCNQPIEIIARDTERDYYMNAYQAKDYGIVDEVLSNPKKPPVGIP-IPANKP 215 Query: 213 WTGAEA 218 G A Sbjct: 216 VEGESA 221 >gi|110456699|gb|ABG74808.1| ATP-dependent protease catalytic subunit [Jasminum abyssinicum] Length = 259 Score = 40.4 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 29/188 (15%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + E+I + ++ D L ++SPGG+ + G AI+ A++ + I + + Sbjct: 77 ANEIIAAMLYLNMQDPLQRLYFFINSPGGAVHDGLAIYDAMKYIDQEIHTICYGQAASMA 136 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 + L S A A S+ V+ P + P +L ++ Sbjct: 137 SVLLASGAKGHRGAYPHSM-----VMMHQPALAPTRGRLQRLVRERNC------------ 179 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV-G 228 + V E+R L + EA++ G+ID + G Sbjct: 180 -----------LNILKERIIDIYVCETRKDRLVIERTLERDHYMSPIEAREYGIIDKIYG 228 Query: 229 GQEEVWQS 236 G + + Sbjct: 229 GIFDKIEE 236 >gi|297531315|ref|YP_003672590.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacillus sp. C56-T3] gi|297254567|gb|ADI28013.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus sp. C56-T3] Length = 196 Score = 40.4 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 64/196 (32%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + I+D + ++ ++ ++ +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IVFLGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIYDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A S + L ++ Sbjct: 89 STICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEIAAKR------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + R++SE+ P + T Sbjct: 143 ------------------------ILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAQ 178 Query: 217 EAKKVGLIDVVGGQEE 232 +A + G+ID V + + Sbjct: 179 KAMEYGIIDRVLTRAD 194 >gi|295114931|emb|CBL35778.1| Protease subunit of ATP-dependent Clp proteases [butyrate-producing bacterium SM4/1] Length = 246 Score = 40.4 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 19/194 (9%), Positives = 64/194 (32%), Gaps = 7/194 (3%) Query: 41 IAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 + + G I + ++ ++ + + + V ++SPGG A I+ + K Sbjct: 22 LFLNGTIAEESWFDDDVTPQLFKEELMAGSGNITVWINSPGGDCVAAAQIYNMLMDYKGD 81 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL--FQYPYVKPFLDKLGVSIKS 154 V + +A++ ++ +I ++ + + ++ ++ L S Sbjct: 82 VTVKIDGIAASAASVIAMAGTQVLISPVGMMMIHNPATIAWGDTAEMRKAIEMLASVKDS 141 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 + ++ ++++ + + R + + +++ Sbjct: 142 IINAYEIKTGLSRAKLSHLMDAETWMDAHKAVEFGFADGILGRTDLPEDMEPPAVTMLYS 201 Query: 215 GAEAKKVGLIDVVG 228 A L+D + Sbjct: 202 -KAAMVNSLMDKIA 214 >gi|76787240|ref|YP_329374.1| prophage LambdaSa04, ClpP endopeptidase [Streptococcus agalactiae A909] gi|76562297|gb|ABA44881.1| prophage LambdaSa04, ClpP endopeptidase (S14) family, non-peptidase homologue, putative [Streptococcus agalactiae A909] Length = 232 Score = 40.4 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 62/205 (30%), Gaps = 37/205 (18%) Query: 33 DNSPHVARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 + V + I GQI D E+ ++ + + + ++SPGG +A I+ Sbjct: 8 TDEGEVRTLRIEGQIADETWFGDEVTPQLFKNDLTSETGDITLWINSPGGDVFAAAQIYN 67 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 + + VI +AASA +I+ A + + +++ Sbjct: 68 MLMDYQGDVHVII--DGLAASAASVIAMAGTTVSMSPVAMMMIHN--------------- 110 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 + K + + + K L Sbjct: 111 ---PWTFAQGEAKDMAKVIEMLGE------------IKESIINAYELRTGLSRTKISHLM 155 Query: 209 DGRIW-TGAEAKKVGLIDVVGGQEE 232 D W +A ++G D V ++E Sbjct: 156 DSESWFNAKKAVELGFADKVLFEKE 180 >gi|56421597|ref|YP_148915.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus kaustophilus HTA426] gi|261420500|ref|YP_003254182.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus sp. Y412MC61] gi|319768169|ref|YP_004133670.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacillus sp. Y412MC52] gi|67460172|sp|Q5KVD9|CLPP_GEOKA RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|56381439|dbj|BAD77347.1| ATP-dependent Clp protease proteolytic subunit (class III heat-shock protein) [Geobacillus kaustophilus HTA426] gi|261376957|gb|ACX79700.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus sp. Y412MC61] gi|317113035|gb|ADU95527.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus sp. Y412MC52] Length = 196 Score = 40.4 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 64/196 (32%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + I+D + ++ ++ ++ +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IVFLGSPIDDQVANSIVSQLLFLAAEDPDKDISLYINSPGGSITAGLAIYDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A S + L ++ Sbjct: 89 STICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEIAAKR------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + R++SE+ P + T Sbjct: 143 ------------------------ILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAQ 178 Query: 217 EAKKVGLIDVVGGQEE 232 +A + G+ID V + + Sbjct: 179 KAMEYGIIDRVLTRAD 194 >gi|319789118|ref|YP_004150751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermovibrio ammonificans HB-1] gi|317113620|gb|ADU96110.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermovibrio ammonificans HB-1] Length = 200 Score = 40.4 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 53/179 (29%), Gaps = 29/179 (16%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGG AG AI+ +Q +K I + A Sbjct: 49 IVAQLLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMQYIKPDVVTICMGQAASMGAVL 108 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A A + + L + ++ I Sbjct: 109 LAAGAKGKRFALPHARIMIHQPLGGFQGQATDIEIHAKEI-------------------- 148 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + L +R + EAK+ GLID V + Sbjct: 149 ---------LRLKRMLNEILAKHTRQPVEKVEQDTERDYFMSAEEAKEYGLIDKVLTRR 198 >gi|218672848|ref|ZP_03522517.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli GR56] Length = 194 Score = 40.4 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 26/196 (13%), Positives = 63/196 (32%), Gaps = 38/196 (19%) Query: 41 IAIRGQIED--SQELIERI--ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 I I G I +Q++ ++ + D+ + ++SPGG +G++I ++ +K + Sbjct: 29 IFIYGPINQELAQKVCSQLVALAAASDEDIR---IYVNSPGGHVESGDSIHDMVKFIKPK 85 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 +I +A A ++ + + + ++ Sbjct: 86 VWMIGTGWVASAGALIYVAAPKERRICLPNTRFLLHQPSGGTRGMASDIEI--------- 136 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215 + ++++ + P DK +D W + Sbjct: 137 ---------------------QAREIIKMNERLNKIMAAATGQPLDKIAKDTDRDYWLSA 175 Query: 216 AEAKKVGLIDVVGGQE 231 EAK GL+ + + Sbjct: 176 EEAKDYGLVSRIVTSQ 191 >gi|86358671|ref|YP_470563.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli CFN 42] gi|116243121|sp|Q2K5Q0|CLPP3_RHIEC RecName: Full=ATP-dependent Clp protease proteolytic subunit 3; AltName: Full=Endopeptidase Clp 3 gi|86282773|gb|ABC91836.1| endopeptidase Clp, subunit 3 protein [Rhizobium etli CFN 42] Length = 194 Score = 40.4 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 26/196 (13%), Positives = 65/196 (33%), Gaps = 38/196 (19%) Query: 41 IAIRGQIED--SQELIERI--ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 I I G I +Q++ ++ + D+ + ++SPGG +G++I ++ +K + Sbjct: 29 IFIYGPINQELAQKVCSQLVALAAASDEDIR---IYVNSPGGHVESGDSIHDMVKFIKPK 85 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 +I +A A ++ + + + ++ Sbjct: 86 VWMIGTGWVASAGALIYVAAPRERRLCLPNTRFLLHQPSGGTRGMASDIE---------- 135 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215 + + ++++E+ P +K +D W + Sbjct: 136 --------------------IQAREIIKMNERLNKIMAEATGQPLEKIAKDTDRDYWLSA 175 Query: 216 AEAKKVGLIDVVGGQE 231 EAK GL+ + + Sbjct: 176 EEAKDYGLVSRIVTSQ 191 >gi|5726289|gb|AAD48398.1|AF127035_1 calcium-activated chloride channel protein 2 [Homo sapiens] Length = 917 Score = 40.4 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 73/265 (27%), Gaps = 21/265 (7%) Query: 46 QIEDSQELIERIER-----------ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I +S++ I + L++ S G + +A + Sbjct: 275 VISNSEDFKNTIPMVTPPPPPVFSLLKIRQRIVCLVLDKSGSMGGKDRLNRMNQAAKHFL 334 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP-YVKPFLDKLGVSIK 153 + M I + + + L YP + + + Sbjct: 335 LQTVENGSWVGMVHFDSTATIVNKLIQIKSSDERNTLMAGLPTYPLGGTSICSGIKYAFQ 394 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW--FVRLVSESRNIPYDKTL--VLSD 209 + + + S + +D V ++ R ++ Sbjct: 395 VIGELHSQLDGSEVLLLTDGEDNTASSCIDEVKQSGAIVHFIALGRAADEAVIEMSKITG 454 Query: 210 GR-IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 G + EA+ GLID G L + + + N W D + Sbjct: 455 GSHFYVSDEAQNNGLIDAFGALTSGNTDLSQKSLQLESKGL---TLNSNAWMNDTVIID- 510 Query: 269 SSLLEDTIPLMKQTKVQGLWAVWNP 293 S++ +DT L+ + ++W+P Sbjct: 511 STVGKDTFFLITWNSLPPSISLWDP 535 >gi|317132778|ref|YP_004092092.1| peptidase S14 ClpP [Ethanoligenens harbinense YUAN-3] gi|315470757|gb|ADU27361.1| peptidase S14 ClpP [Ethanoligenens harbinense YUAN-3] Length = 248 Score = 40.4 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 36/255 (14%), Positives = 78/255 (30%), Gaps = 37/255 (14%) Query: 41 IAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 + + G+I D E+ ++ + + + + ++SPGG +A I+ + Sbjct: 23 LYLDGEISDETWYGDEVTPQVFKDELNSGKGNITLWINSPGGDVFAAAQIYNMLMDYPYD 82 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 V +AASA +I+ A + + +++ ++ Sbjct: 83 VTVKI--DALAASAASVIAMAGTKVCMSPVAMLMVHNPA------------------TIA 122 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215 + ++ +M S + +K L D W Sbjct: 123 IGDSEEMQKAIDMLSEVKESIMNAYEIKS------------GLSRNKISKLMDAETWMNA 170 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 EAKK+G D + + S + +I+ K L L E Sbjct: 171 KEAKKLGFADEILFADGTEPSGDNDSTEHDDGEIEMLFSRKAVTDSLLSKLIPKRKPEIK 230 Query: 276 IPLMKQTKVQGLWAV 290 +K ++ ++ Sbjct: 231 TQTIKVADLEKRLSL 245 >gi|299142816|ref|ZP_07035944.1| ClpP protease [Prevotella oris C735] gi|298575684|gb|EFI47562.1| ClpP protease [Prevotella oris C735] Length = 365 Score = 40.4 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 21/187 (11%), Positives = 61/187 (32%), Gaps = 21/187 (11%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 + +++SSPGG AG I++ I+ ++ + + A+ + S+ Sbjct: 41 VDIAVSSPGGYVDAGLEIYQMIKDH----------GKVNIHILGMTASAATFLTMGAKSV 90 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 G L + + + K + + ++N + Sbjct: 91 DMVDGSLMLIHNASTAVREWQSANKEQLDALIAKYQKERDDLNTIDKVIASLYA------ 144 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 ++ + + + ++A + GLID + ++ + ++ + Sbjct: 145 -----KKNGKSVDECMDKMQKAAWLSPSDALEFGLIDKIREDDDAARKANSIRNHFNNNI 199 Query: 249 IKDWNPP 255 +++ P Sbjct: 200 FQEFGLP 206 >gi|239834344|ref|ZP_04682672.1| Fatty acid oxidation complex subunit alpha [Ochrobactrum intermedium LMG 3301] gi|239822407|gb|EEQ93976.1| Fatty acid oxidation complex subunit alpha [Ochrobactrum intermedium LMG 3301] Length = 759 Score = 40.4 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 73/245 (29%), Gaps = 22/245 (8%) Query: 46 QIEDSQELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVIT 101 +E QEL I+ + D+ ++++ S G A E +F+ QK K + Sbjct: 52 TVEAMQELNAIIDATTADEKVKGVVITSGKESFSGGADLTMLEGMFKEFQKQKAKDHQAA 111 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + + + + Sbjct: 112 VQALFDNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARV 159 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221 A +P ++ V++ RL ++ D +++ G T AK + Sbjct: 160 ASDAPGVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAM 214 Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 GL+ + +++ ++ L ++ ++ W+ + + L + + Sbjct: 215 GLVTEIAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILR 273 Query: 282 TKVQG 286 + G Sbjct: 274 RETSG 278 >gi|186685824|ref|YP_001869020.1| hypothetical protein Npun_R5779 [Nostoc punctiforme PCC 73102] gi|186468276|gb|ACC84077.1| protein of unknown function DUF114 [Nostoc punctiforme PCC 73102] Length = 297 Score = 40.4 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 72/183 (39%), Gaps = 14/183 (7%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 IEDS++++ I D ++ +PGG A E I RA+ + + + V V Sbjct: 68 TIEDSEQILRAIRLTPPDVPIDLIL---HTPGGLVLATEQIARALIRHQAK--VTVFVPH 122 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 A S G +++ AS+ I+ +++G + L + S + + Sbjct: 123 YAMSGGTMLALASDEIIMDANAVLGPVDPQLGNYPAASILKVIEDKPIS----EIDDQTL 178 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-----WTGAEAKK 220 ++++ KA+ +Q V + + L+ GR+ T EA + Sbjct: 179 IMADLSRKAIGQVQRFVRTLLKDSIPKQKVLPENIESIIEALTTGRVTHDYPITIEEATE 238 Query: 221 VGL 223 +GL Sbjct: 239 MGL 241 >gi|152989915|ref|YP_001355637.1| ATP-dependent Clp protease proteolytic subunit [Nitratiruptor sp. SB155-2] gi|166201830|sp|A6Q1C1|CLPP_NITSB RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|151421776|dbj|BAF69280.1| ATP-dependent Clp protease, proteolytic subunit [Nitratiruptor sp. SB155-2] Length = 196 Score = 40.4 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D+ ++ ++ + +D + + ++SPGG +G +I+ + +K Sbjct: 30 IIMLSGEINDAVASSIVAQLLFLEAEDPDKDIYLYINSPGGVITSGMSIYDTMNYIKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S A + + L ++ Sbjct: 90 STICIGQAASMGAFLLSSGTKGKRYALPHARIMIHQPLGGAQGQATDIE----------- 138 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +++E+ K ++ + + Sbjct: 139 -------------------IQAKEILRLKKILNEILAENTGQSVKKIAKDTERDFFMSSE 179 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 180 EAKEYGLIDQV 190 >gi|149376712|ref|ZP_01894470.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter algicola DG893] gi|149358951|gb|EDM47417.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter algicola DG893] Length = 227 Score = 40.4 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 59 VIFLVGPVEDHMANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 118 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A S V L Y ++ I ++ Sbjct: 119 ATLCVGQAASMGAFLLAGGAEGKRACLPNSRVMIHQPLGGYQGQATDIEIHTREILKIRH 178 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 +++ D +D + Sbjct: 179 ------------------------------TLNSILAHHTGQKLDTIAKDTDRDNFMDPQ 208 Query: 217 EAKKVGLIDVVGG 229 +AK GLID + Sbjct: 209 QAKDYGLIDSILD 221 >gi|134046687|ref|YP_001098172.1| hypothetical protein MmarC5_1661 [Methanococcus maripaludis C5] gi|132664312|gb|ABO35958.1| protein of unknown function DUF114 [Methanococcus maripaludis C5] Length = 274 Score = 40.4 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 IEDS+E++ I D ++ +PGG A E I A+++ K + VI + Sbjct: 66 TIEDSEEILRAIRMTPEDMPIDLIL---HTPGGLVLASEQIATALKEHKAKTTVIIPHYA 122 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 M+ G LI+ A++ I+ + +++G + ++ + Sbjct: 123 MSG--GSLIALAADEIIIDKNAVMGPVDPQVGQYPAASIINAINTKY 167 >gi|323439020|gb|EGA96753.1| phiSLT ORF257-like protein, putative prophage protease [Staphylococcus aureus O11] Length = 255 Score = 40.4 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 38/221 (17%) Query: 41 IAIRGQIEDSQELIERI------ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I I G I + + ++ + + V ++S GGS + G AI+ ++ Sbjct: 18 IFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHP 77 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + V +AAS +I+ + + I + S + Sbjct: 78 AKIN--IYVDALAASIASVIAMSGDTIFMHKNSFLMIHN--------------------- 114 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213 + + + + + +++++ + + D W Sbjct: 115 --------SWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWL 166 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 T EA GLID + G E+ S+ + +D Sbjct: 167 TAEEALSFGLIDEILGANEIAASISKEQYKRFENVPEDLKK 207 >gi|264679702|ref|YP_003279609.1| peptidase S14, ClpP [Comamonas testosteroni CNB-2] gi|262210215|gb|ACY34313.1| peptidase S14, ClpP [Comamonas testosteroni CNB-2] Length = 697 Score = 40.4 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 62/219 (28%), Gaps = 46/219 (21%) Query: 41 IAIRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 I I G I ++ + + + A+ V ++S GGS G AI+ A+++ Sbjct: 30 ILIYGDIGESWWDETTSAKSFLAELSAL----DVDAITVRINSLGGSVPDGIAIYNAMKR 85 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 K V + S+ I + + + + Sbjct: 86 HKATITV--------------------EVDGIAYSIASLIAMGGDTVNMASNALMMIHAP 125 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR- 211 + + +++ + + + +L+DG+ Sbjct: 126 WTYAAGNSAELRELADQLD------------TWANAMSTSYAAKTGDQAGALALLTDGKD 173 Query: 212 -IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 +T EA + ID + + S R + Sbjct: 174 HFFTAEEALALKFIDAITDSNPIAASAARDMPISRYRSL 212 >gi|167753873|ref|ZP_02426000.1| hypothetical protein ALIPUT_02158 [Alistipes putredinis DSM 17216] gi|167658498|gb|EDS02628.1| hypothetical protein ALIPUT_02158 [Alistipes putredinis DSM 17216] Length = 335 Score = 40.4 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 61/219 (27%), Gaps = 41/219 (18%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQI---------------EDSQELIERIERISRDDSATA 68 S N + I G I ++ + ++R+ D A Sbjct: 41 LSMQSDIQITNRNDTCFVDIEGVIGVPEEWQFDQPSSRVATYEKFRDSLDRLREID-APE 99 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 ++V++ S GG I+ A+ + + +A+ + + + +L Sbjct: 100 IVVNIRSTGGDVNDALLIYEALSSLDGHIVTRCYGYTASAATVIAQAASEGCREISAHAL 159 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 + L + + + ++ + Sbjct: 160 YLIHNSICTAEGNAEEL---------------ATRIDLLRKTDARLAEVYAARSGRTPEE 204 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 F L++E+ GR + EA GL+D + Sbjct: 205 FTLLMAENNG----------SGRWLSPQEALAAGLVDRI 233 >gi|51598863|ref|YP_073051.1| ATP-dependent Clp protease proteolytic subunit [Borrelia garinii PBi] gi|67460252|sp|Q660R2|CLPP_BORGA RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|51573434|gb|AAU07459.1| ATP-dependent Clp protease proteolytic component [Borrelia garinii PBi] Length = 194 Score = 40.4 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + +I ++ + +DS + + L+SPGGS AG AI+ +Q +K Sbjct: 30 IIFLSGEINDLKADTVIAQLLFLESEDSNKDIYLYLNSPGGSITAGLAIYDTMQYIKPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 I + A L A + S + Sbjct: 90 RTICIGQAASMGAFLLAGGAKGKRESLAYSRIMIHQPWG 128 >gi|27382379|ref|NP_773908.1| enoyl-CoA hydratase [Bradyrhizobium japonicum USDA 110] gi|27355550|dbj|BAC52533.1| blr7268 [Bradyrhizobium japonicum USDA 110] Length = 326 Score = 40.4 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 32/267 (11%), Positives = 74/267 (27%), Gaps = 43/267 (16%) Query: 31 VEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAY 81 VE P +AR+ + D++ +L + +DD+ +I++ + P S+ Sbjct: 51 VERPEPAIARVVMNRP--DARNAQNLQMTYDLNAAFDAAVQDDTVKVIILAGNGPHFSSG 108 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 K + G ++ A E + I ++ Sbjct: 109 H--------DLRPGGKNEAGVDFPPIGNWGGFAEANAHGRFAREQEIYLQITRRWRNLAK 160 Query: 142 KPFLD----------KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVR 191 + L + + +S P + + Sbjct: 161 PVIAEVHGKCIAGGLMLAWACDLIVASDDAQFCDPVVAM--------GVCGVEWFVHPWE 212 Query: 192 LVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKD 251 L P L W+ EA ++G+++ V + E+ + L + + Sbjct: 213 L------GPRKAKEFLFTADSWSAQEAHQLGMVNQVVPRAELSSRVLELARRIASKPSFA 266 Query: 252 WNPPKNYWFCDLKNLSISSLLEDTIPL 278 K + + + ++ L Sbjct: 267 LKLTKEAVNRSVDVMGQPAAIDQAFAL 293 >gi|254444482|ref|ZP_05057958.1| Clp protease [Verrucomicrobiae bacterium DG1235] gi|198258790|gb|EDY83098.1| Clp protease [Verrucomicrobiae bacterium DG1235] Length = 192 Score = 40.4 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 62/180 (34%), Gaps = 29/180 (16%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 ++++ E++ + D + +++PGGS AG AI+ I+ + + VI V +AA Sbjct: 37 SAKDVTEKLFYLEADAPGKDITFYINTPGGSVTAGLAIYDTIKLISSE--VIVVVTGLAA 94 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 S G ++ A L VL P + V I K Sbjct: 95 SMGSILLSAPKKG---NRLLYPHAKVLIHQPLIGGQFQGPAVDIHIFAQDMEKTREELNR 151 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 + +++ P DK +D + + EA GL D + Sbjct: 152 IL-----------------------ADASGQPLDKIKEDTDRDFYMSAQEAIDYGLADRI 188 >gi|198431267|ref|XP_002129674.1| PREDICTED: similar to AGAP010130-PA [Ciona intestinalis] Length = 266 Score = 40.4 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 61/218 (27%), Gaps = 28/218 (12%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 LIE++ I +DDS + + S G + + Sbjct: 40 NLIEKLRDIEKDDSVKGV-LVTSKYNGETFISGL--------------------NSYDMH 78 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 A + ++ + D + V + + Sbjct: 79 NQTDERLAKYWTAVQDIHFTMYSFGKPIVAAINGDAVAGGCAFVLTCDYRVMMKGKRTGL 138 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 P+A + Y ++ V +R L +G+I++ EA KVGL+D Sbjct: 139 PEAQFGIV--APFFYIDVMKSVIGNRQCEL----ALLEGKIFSTEEAAKVGLVDEAVDLN 192 Query: 232 EVW-QSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSI 268 V ++ L I + + D++ Sbjct: 193 LVLPNAMKKLQHLVKIPQPAFKLTKQTLRQADIEKFIA 230 >gi|195578155|ref|XP_002078931.1| GD23683 [Drosophila simulans] gi|194190940|gb|EDX04516.1| GD23683 [Drosophila simulans] Length = 253 Score = 40.4 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D S ++ ++ + ++ + + ++SPGG AG AI+ +Q VK Sbjct: 55 IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A + + + + + I +K Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKR 174 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + R T E Sbjct: 175 --------------------QLTNIYVKHAKNTYEEMCGRMERD---------HFMTPEE 205 Query: 218 AKKVGLIDVV 227 AK +G+ID V Sbjct: 206 AKVLGIIDHV 215 >gi|195473623|ref|XP_002089092.1| GE18928 [Drosophila yakuba] gi|194175193|gb|EDW88804.1| GE18928 [Drosophila yakuba] Length = 253 Score = 40.4 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D S ++ ++ + ++ + + ++SPGG AG AI+ +Q VK Sbjct: 55 IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A + + + + + I +K Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKR 174 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + R T E Sbjct: 175 --------------------QLTNIYVKHAKNTYEEMCGRMERD---------HFMTPEE 205 Query: 218 AKKVGLIDVV 227 AK +G+ID V Sbjct: 206 AKVLGIIDHV 215 >gi|195339773|ref|XP_002036491.1| GM18225 [Drosophila sechellia] gi|116811667|emb|CAL26000.1| CG5045 [Drosophila simulans] gi|194130371|gb|EDW52414.1| GM18225 [Drosophila sechellia] Length = 253 Score = 40.4 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D S ++ ++ + ++ + + ++SPGG AG AI+ +Q VK Sbjct: 55 IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A + + + + + I +K Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKR 174 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + R T E Sbjct: 175 --------------------QLTNIYVKHAKNTYEEMCGRMERD---------HFMTPEE 205 Query: 218 AKKVGLIDVV 227 AK +G+ID V Sbjct: 206 AKVLGIIDHV 215 >gi|116811645|emb|CAL25989.1| CG5045 [Drosophila melanogaster] gi|116811649|emb|CAL25991.1| CG5045 [Drosophila melanogaster] gi|116811651|emb|CAL25992.1| CG5045 [Drosophila melanogaster] gi|116811653|emb|CAL25993.1| CG5045 [Drosophila melanogaster] gi|116811655|emb|CAL25994.1| CG5045 [Drosophila melanogaster] gi|116811657|emb|CAL25995.1| CG5045 [Drosophila melanogaster] gi|116811659|emb|CAL25996.1| CG5045 [Drosophila melanogaster] gi|116811661|emb|CAL25997.1| CG5045 [Drosophila melanogaster] gi|116811663|emb|CAL25998.1| CG5045 [Drosophila melanogaster] gi|116811665|emb|CAL25999.1| CG5045 [Drosophila melanogaster] gi|223966785|emb|CAR93129.1| CG5045-PA [Drosophila melanogaster] gi|223966787|emb|CAR93130.1| CG5045-PA [Drosophila melanogaster] gi|223966789|emb|CAR93131.1| CG5045-PA [Drosophila melanogaster] gi|223966791|emb|CAR93132.1| CG5045-PA [Drosophila melanogaster] gi|223966795|emb|CAR93134.1| CG5045-PA [Drosophila melanogaster] gi|223966797|emb|CAR93135.1| CG5045-PA [Drosophila melanogaster] gi|223966799|emb|CAR93136.1| CG5045-PA [Drosophila melanogaster] gi|223966801|emb|CAR93137.1| CG5045-PA [Drosophila melanogaster] gi|223966803|emb|CAR93138.1| CG5045-PA [Drosophila melanogaster] Length = 253 Score = 40.4 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D S ++ ++ + ++ + + ++SPGG AG AI+ +Q VK Sbjct: 55 IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A + + + + + I +K Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKR 174 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + R T E Sbjct: 175 --------------------QLTNIYVKHAKNTYEEMCGRMERD---------HFMTPEE 205 Query: 218 AKKVGLIDVV 227 AK +G+ID V Sbjct: 206 AKVLGIIDHV 215 >gi|253681101|ref|ZP_04861904.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum D str. 1873] gi|331270305|ref|YP_004396797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum BKT015925] gi|253562950|gb|EES92396.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum D str. 1873] gi|329126855|gb|AEB76800.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium botulinum BKT015925] Length = 195 Score = 40.4 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 56/185 (30%), Gaps = 31/185 (16%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++ ++ + +D + + ++SPGGS AG AI+ +Q +K I + Sbjct: 39 VSASLVVAQLLFLEAEDPDKDIYLYINSPGGSITAGMAIYDTMQYIKPDVSTICIGMAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L + A A S + L + + I +K K Sbjct: 99 MGAFLLTAGAKGKRFALPNSEIMIHQPLGGFQGQATDIGIHANRILKIKDKLNKIL---- 154 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDV 226 SE P + + EAK+ GLID Sbjct: 155 --------------------------SERTGKPLEVIKKDVERDNFMEADEAKEYGLIDD 188 Query: 227 VGGQE 231 V Sbjct: 189 VITSR 193 >gi|320140399|gb|EFW32254.1| Clp protease [Staphylococcus aureus subsp. aureus MRSA131] gi|320142757|gb|EFW34560.1| Clp protease [Staphylococcus aureus subsp. aureus MRSA177] Length = 255 Score = 40.4 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 38/221 (17%) Query: 41 IAIRGQIEDSQELIERI------ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I I G I + + ++ + + V ++S GGS + G AI+ ++ Sbjct: 18 IFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHP 77 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + V +AAS +I+ + + I + S + Sbjct: 78 AKIN--IYVDALAASIASVIAMSGDTIFMHKNSFLMIHN--------------------- 114 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213 + + + + + +++++ + + D W Sbjct: 115 --------SWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWL 166 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 T EA GLID + G E+ S+ + +D Sbjct: 167 TAEEALSFGLIDEILGANEIAASISKEQYKRFENVPEDLKK 207 >gi|229150843|ref|ZP_04279055.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus m1550] gi|228632632|gb|EEK89249.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus m1550] Length = 254 Score = 40.4 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 33/176 (18%) Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116 I + D + L+VS++SPGG + G I+ A++ V +AASA +I+ Sbjct: 27 ISKALEDANGDDLVVSINSPGGYVHEGSEIYTALKNYPGHVEVQIVG--LAASAASVIAM 84 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 A++ + + T+ + + + Sbjct: 85 AADKVRISPTAQIMIHNASM------------------WNGGDYRDMSKAAEMLKTTDRA 126 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-AEAKKVGLIDVVGGQE 231 ++ V S ++ L + W G +A + +D + + Sbjct: 127 IVNAYVIKS------------GKSEEELLNMMAEETWMGPQQALENNFVDEIMFMD 170 >gi|157370220|ref|YP_001478209.1| ATP-dependent Clp protease proteolytic subunit [Serratia proteamaculans 568] gi|157321984|gb|ABV41081.1| Endopeptidase Clp [Serratia proteamaculans 568] Length = 197 Score = 40.4 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 23/191 (12%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++ D ++ L ++ + ++ + + ++SPGG +G AI+ + + Sbjct: 33 IVFLNGEVNDQIAEVLCAQLLFLEAENPEKPIHLYINSPGGVITSGFAIYDTMNYINAPV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + + + + G G P + + + Sbjct: 93 --------------HTLCMGTARSMGSFLLMAGEAGHRMVLPNASLHVHQPLGGFQG--- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + + + + H + L ++ Y++ L + Sbjct: 136 -------------QASDILIHAEEMKRTKHSVITLYAKHCGRSYEEVERALDRDHFMSAD 182 Query: 217 EAKKVGLIDVV 227 EA + GL+D V Sbjct: 183 EAVEWGLVDKV 193 >gi|14520474|ref|NP_125949.1| hypothetical protein PAB2437 [Pyrococcus abyssi GE5] gi|5457689|emb|CAB49180.1| Hypothetical protein, DUF114 family [Pyrococcus abyssi GE5] Length = 280 Score = 40.4 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 23/184 (12%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 +EDS+E++ I +D +I +PGG A I +A++ VI + M Sbjct: 73 MEDSEEVLRAIRMAPKDKPIDLII---HTPGGLVLAATQIAKALKDHPAETRVIVPHYAM 129 Query: 107 AASAGYLISCASNIIVAAETSLVGSIG-VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 + G LI+ A++ I+ +++G + L QYP +++ K Sbjct: 130 SG--GTLIALAADKIIMDPHAVLGPVDPQLGQYPAPS-----------IIRAVERKGPDK 176 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAK 219 + A + + + L + + + + WT EA+ Sbjct: 177 VDDQTLILADVAEKAIKQVRDFIYDLLKDKYGDEKAKELAKILTEGRWTHDYPITVEEAR 236 Query: 220 KVGL 223 K+GL Sbjct: 237 KLGL 240 >gi|301154977|emb|CBW14440.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Haemophilus parainfluenzae T3T1] Length = 188 Score = 40.4 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 24 VIFLSGEVEDRMANLIVAQLLFLESEDPKKDINIYINSPGGSVTAGMAIYDTMQFIKPDV 83 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A + V L + Sbjct: 84 RTLCIGQACSMGAFLLAGGTAGKRAALPNARVMIHQPLGGFRGQ---------------- 127 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +Q+ + ++ ++ +D + + Sbjct: 128 --------------ASDIQIHAQEILKIKQTLNERLAFHTGQSIERIEKDTDRDNFMSAE 173 Query: 217 EAKKVGLIDVV 227 EAK GL+D V Sbjct: 174 EAKAYGLVDDV 184 >gi|312195811|ref|YP_004015872.1| endopeptidase Clp [Frankia sp. EuI1c] gi|311227147|gb|ADP80002.1| Endopeptidase Clp [Frankia sp. EuI1c] Length = 210 Score = 40.4 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 60/181 (33%), Gaps = 31/181 (17%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + +D + + ++SPGGS + AI+ +Q V+ I + Sbjct: 47 VSANDVMAQLLFLESEDPDRDISIYINSPGGSFTSLTAIYDTMQFVRPDIQTICMGQAAS 106 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + A + S + ++ Sbjct: 107 AAAVLLAAGTPGKRFALQNSRILIHQPSGSGEGQSSDIE--------------------- 145 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDV 226 + + +++++ + + +I + EAK+ GLID Sbjct: 146 ---------IQAREILRMRSLLEKMLADHTGKAEEDIRRDIERDKILSADEAKEYGLIDE 196 Query: 227 V 227 V Sbjct: 197 V 197 >gi|168769871|ref|ZP_02794878.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4486] gi|195937919|ref|ZP_03083301.1| putative protease/scaffold protein [Escherichia coli O157:H7 str. EC4024] gi|189361107|gb|EDU79526.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4486] Length = 629 Score = 40.4 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 81/256 (31%), Gaps = 50/256 (19%) Query: 38 VARIAIRGQIEDSQELIERI-ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 V + I +I + + I+ + + + + + SPGG + G AI+ A++ + Sbjct: 13 VVHVRIYDEIGGYGVKASALTDEINACGNVSEIHLRIHSPGGDIFEGLAIYNALKNHPAK 72 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 K I + MAAS I+ + IV E +++ V Sbjct: 73 K--IVHIEGMAASMASFIAMCGDHIVMPENAMMMIHAPRGVTAGVSG------------- 117 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-G 215 V+ D++D + + + + W G Sbjct: 118 -----------------DVRRFADLMDKLGDTMAETYAGRTGRSKQEITAMMEAETWMDG 160 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 E K G D EV ++ A+ +S K I S++ Sbjct: 161 NECKANGFAD------EVIAAITAMARIES----------KRIGDFSNMPEKIKSMISQK 204 Query: 276 IPLMKQTKVQGLWAVW 291 +Q ++ G+ ++ Sbjct: 205 TTSGEQERLNGIRELF 220 >gi|227500202|ref|ZP_03930271.1| endopeptidase Clp [Anaerococcus tetradius ATCC 35098] gi|227217724|gb|EEI83028.1| endopeptidase Clp [Anaerococcus tetradius ATCC 35098] Length = 197 Score = 40.4 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D S +I ++ + +D + ++SPGG +G AI+ + +K Sbjct: 33 IIFLSGEVRDEISDIIIAQLLFLESEDPDKDIQFYINSPGGVVTSGLAIYDTMNYIKPDV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L S A + +S + + + + + + Sbjct: 93 STICIGQAASMAAVLLSSGAKGKRYSLPSSNIMIHQPSG---GAQGQASDIVIQAEQIIK 149 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGA 216 K S++ K +D T Sbjct: 150 IKEKLNKIL---------------------------SDNTGQSLKKIEKDTDRDFAMTAE 182 Query: 217 EAKKVGLIDVV 227 EA K GLID V Sbjct: 183 EALKYGLIDKV 193 >gi|126178331|ref|YP_001046296.1| hypothetical protein Memar_0381 [Methanoculleus marisnigri JR1] gi|125861125|gb|ABN56314.1| protein of unknown function DUF114 [Methanoculleus marisnigri JR1] Length = 276 Score = 40.4 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 66/183 (36%), Gaps = 21/183 (11%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 I DS+E++ I + + ++ +PGG + E I A+++ + V V Sbjct: 69 INDSEEVLRAIRLTAPEMPIDLIL---HTPGGLILSSEQIAMALRRH--KGKVTVFVPHY 123 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 A S G LI A++ +V E +++G + L + + P + Sbjct: 124 AMSGGTLICLAADEVVMDENAVLGPVDPRIGEYPAASLL-------RVPRLKPPEEIDDE 176 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220 + A + + + + R D L G WT +A++ Sbjct: 177 TFVLVDIAAKAQTQMREFVADLLRERMDAGR---ADSLARLLSGGTWTHDYPITFEQARE 233 Query: 221 VGL 223 +GL Sbjct: 234 LGL 236 >gi|237743260|ref|ZP_04573741.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp. 7_1] gi|260495117|ref|ZP_05815246.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium sp. 3_1_33] gi|229433039|gb|EEO43251.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp. 7_1] gi|260197560|gb|EEW95078.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium sp. 3_1_33] Length = 193 Score = 40.4 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 55/179 (30%), Gaps = 29/179 (16%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + +I ++ + +D +I+ ++SPGGS G AI+ + +K + + Sbjct: 40 ANSIIAQLLYLEAEDPEKDIIMYINSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMG 99 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L + A A E S + L D Sbjct: 100 AFLLAAGAKGKRFALENSRIMIHQPLISGGLKGQATDI---------------------- 137 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227 + + + L++++ ++ + EA GLID V Sbjct: 138 ------SIHANELLKIKDKLAELLAKNTGKTKEQILRDTERDNYLSSEEAVNYGLIDSV 190 >gi|225175200|ref|ZP_03729196.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dethiobacter alkaliphilus AHT 1] gi|225169376|gb|EEG78174.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dethiobacter alkaliphilus AHT 1] Length = 193 Score = 40.4 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I I+D+ +I ++ + +D + + ++SPGGS YAG AI+ +Q +K Sbjct: 29 IIFIGSPIDDNVANLVIAQLLFLESEDPEKDINIYVNSPGGSVYAGLAIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A + S + L ++ I + Sbjct: 89 STICVGLAASMGAVLLAAGADGKRFSLPNSRIMVHQPLGGAQGQAVDIEIHAKEILRI-- 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 ++S P ++ + Sbjct: 147 ----------------------------RERLNEILSGHTGKPVEQIARDTDRDYFMSAE 178 Query: 217 EAKKVGLIDVV 227 +AK+ GLID V Sbjct: 179 QAKEYGLIDGV 189 >gi|170017407|ref|YP_001728326.1| protease subunit of ATP-dependent Clp protease [Leuconostoc citreum KM20] gi|169804264|gb|ACA82882.1| Protease subunit of ATP-dependent Clp protease [Leuconostoc citreum KM20] Length = 229 Score = 40.4 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 27/204 (13%), Positives = 61/204 (29%), Gaps = 45/204 (22%) Query: 41 IAIRGQIEDSQEL---IERIERISRDD---------SATALIVSLSSPGGSAYAGEAIFR 88 + I+G I ++ ++ + + + + L + ++S GG A I+ Sbjct: 3 LDIKGIITNNDDVEIYRQGLGYAATSPSDILANLPTDGSDLEIGINSGGGEVDAANEIYT 62 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 A++ + I ++ S I + + P + Sbjct: 63 ALRNYPGKV--------------------ITQIESSAYSAASIIAMAGDKVQISPVAQLM 102 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 + + + + + + V R P ++ L L Sbjct: 103 IHNASTYAGGNHNDLDKTSNALKSTDKAIAKAYS----------VKTGR--PVEEFLALM 150 Query: 209 DGRIW-TGAEAKKVGLIDVVGGQE 231 D W +A ++GL+D V E Sbjct: 151 DKETWINADDALELGLVDEVMTFE 174 >gi|86610014|ref|YP_478776.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus sp. JA-2-3B'a(2-13)] gi|115311349|sp|Q2JIP1|CLPP2_SYNJB RecName: Full=ATP-dependent Clp protease proteolytic subunit 2; AltName: Full=Endopeptidase Clp 2 gi|86558556|gb|ABD03513.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus sp. JA-2-3B'a(2-13)] Length = 200 Score = 40.4 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 56/176 (31%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGGS YAG AI+ +Q ++ I + A Sbjct: 42 IVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFL 101 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L +A + + L ++ I + Sbjct: 102 LAGGTKGKRIALPHARIMIHQPLGGAQGPATDIEIQAKEILFI----------------- 144 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227 + L++ P ++ T +AK+ GLID V Sbjct: 145 -------------KNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKEYGLIDQV 187 >gi|311107134|ref|YP_003979987.1| enoyl-CoA hydratase [Achromobacter xylosoxidans A8] gi|310761823|gb|ADP17272.1| enoyl-CoA hydratase/isomerase family protein 18 [Achromobacter xylosoxidans A8] Length = 245 Score = 40.4 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 58/209 (27%), Gaps = 28/209 (13%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 LI +ER + D + A++++ P G AG + + + R + Sbjct: 15 DALIAALERANADPAVRAVLLASDLP-GRFCAGLDMKKLLDSTPARIHALLSKL-YIKLY 72 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + I ++ G + + D + + A Sbjct: 73 DTQFNLTKPSISVVSGAVRGGGMTVAISSDLVVAADTATFGYPEIDVGVLPAIHYVHLP- 131 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 +V + R L GRI+ EA +GL+ V Sbjct: 132 --------------------GIVGKHRAFDL-----LFTGRIFDAQEAHGLGLVARVAPA 166 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 ++ + L + + + + + Sbjct: 167 AQLLEQARLLARSLADKPPQVLAMGRRAF 195 >gi|160879125|ref|YP_001558093.1| endopeptidase Clp [Clostridium phytofermentans ISDg] gi|160427791|gb|ABX41354.1| Endopeptidase Clp [Clostridium phytofermentans ISDg] Length = 193 Score = 40.4 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 62/191 (32%), Gaps = 31/191 (16%) Query: 40 RIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G++ + +I ++ + +DS + + ++SPGGS G AI+ ++ +K Sbjct: 29 IIFINGEVNHVSAGLVIAQLLYLEAEDSKKDIRLYINSPGGSIPDGLAIYDTMRYLKCDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L A + + Sbjct: 89 STTCIGMAASMGSFLLAGGTKGKRFALPNAEILIHQPSG--------------------- 127 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +M + ++ +++SE+ + +D + T Sbjct: 128 -------GIQAPAQATDIDIMSKHILNTRRRVNQILSENTGKEISQIEKDTDRDYYMTAE 180 Query: 217 EAKKVGLIDVV 227 EA G+ID + Sbjct: 181 EALNYGIIDKI 191 >gi|167462695|ref|ZP_02327784.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus larvae subsp. larvae BRL-230010] Length = 165 Score = 40.4 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 61/179 (34%), Gaps = 31/179 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + +I ++ ++ D + + ++SPGGS AG AI+ +Q +K I + Sbjct: 13 ANSIIAQLLFLAAQDPDKDISLYINSPGGSITAGMAIYDTMQYIKPDVSTICVGMAASMG 72 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L + A A S V L ++ Sbjct: 73 AFLLNAGAVGKRYALPNSEVMIHQPLGGAEGQATDIEIRAKR------------------ 114 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 + R++SE P +K +D + + +EAK+ GLID V Sbjct: 115 ------------IIKMRENLNRILSERTGQPLEKIERDTDRDYFMSASEAKEYGLIDKV 161 >gi|168756419|ref|ZP_02781426.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4401] gi|168770135|ref|ZP_02795142.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4486] gi|189356545|gb|EDU74964.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4401] gi|189361013|gb|EDU79432.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4486] Length = 629 Score = 40.4 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 81/256 (31%), Gaps = 50/256 (19%) Query: 38 VARIAIRGQIEDSQELIERI-ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 V + I +I + + I+ + + + + + SPGG + G AI+ A++ + Sbjct: 13 VVHVRIYDEIGGYGVKASALTDEINACGNVSEIHLRIHSPGGDIFEGLAIYNALKNHPAK 72 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 K I + MAAS I+ + IV E +++ V Sbjct: 73 K--IVHIEGMAASMASFIAMCGDHIVMPENAMMMIHAPRGVTAGVSG------------- 117 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-G 215 V+ D++D + + + + W G Sbjct: 118 -----------------DVRRFADLMDKLGDTMAETYAGRTGRSKQEITAMMEAETWMDG 160 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 E K G D EV ++ A+ +S K I S++ Sbjct: 161 NECKANGFAD------EVIAAITAMARIES----------KRIGDFSNMPEKIKSMISQK 204 Query: 276 IPLMKQTKVQGLWAVW 291 +Q ++ G+ ++ Sbjct: 205 TTSGEQERLNGIRELF 220 >gi|317128309|ref|YP_004094591.1| hypothetical protein Bcell_1597 [Bacillus cellulosilyticus DSM 2522] gi|315473257|gb|ADU29860.1| protein of unknown function DUF107 [Bacillus cellulosilyticus DSM 2522] Length = 444 Score = 40.4 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 32/286 (11%), Positives = 81/286 (28%), Gaps = 28/286 (9%) Query: 5 LKKIKTRYV-MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERIS 61 +K+I+ + ++ L ++ + + + + V I + ++E L I Sbjct: 1 MKRIRLIFFSLMMLFSIGLSLVPIQAQGDGSDKLVYYIPVEQEVERGLVAFLQRSINTAL 60 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 D A ++ +++PGG A I I+ + + Sbjct: 61 ED-GADHIVFEINTPGGLVAAANEIAALIENTPTPT----------------TAFVIDEA 103 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 ++A + + P + ++ + + + Sbjct: 104 MSAGAYISLKADQIVMVPGARMGAAQVISGGDGNAADDKAHSAWLATMKAAAEGNDRDPL 163 Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 + + E R L T +EA +VG + + E L Sbjct: 164 YALAMADPSIDLPEYR----AGVDDLLS---LTASEALEVGYAEAIASNREELLQFLGLE 216 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 + + + + +SI + ++ L+ + G Sbjct: 217 NAREQEMEVSFAEQIARFVTNPIVISILLSVA-SLGLVLELYSPGF 261 >gi|195051114|ref|XP_001993036.1| GH13604 [Drosophila grimshawi] gi|193900095|gb|EDV98961.1| GH13604 [Drosophila grimshawi] Length = 255 Score = 40.4 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 58/190 (30%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D S ++ ++ + ++ + + ++SPGG AG AI+ +Q VK Sbjct: 55 IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A + + + + D L + + +K Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGGAQGQAT--DILIHAEEIIKI 172 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 A + D T E Sbjct: 173 KRQLTNIYVKHAQYDYAEMSSRMERDH---------------------------FMTPEE 205 Query: 218 AKKVGLIDVV 227 AK +G+ID V Sbjct: 206 AKVLGIIDHV 215 >gi|299821953|ref|ZP_07053841.1| ATP-dependent Clp protease proteolytic subunit [Listeria grayi DSM 20601] gi|299817618|gb|EFI84854.1| ATP-dependent Clp protease proteolytic subunit [Listeria grayi DSM 20601] Length = 203 Score = 40.4 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 61/199 (30%), Gaps = 33/199 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + ++ ++ + D + + ++SPGGS AG AI+ + VK Sbjct: 35 IIMLGSAIDDNVANSIVAQLLFLDSQDPDKDIYLYINSPGGSISAGMAIYDTMNLVKADV 94 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A S + L ++ Sbjct: 95 QTIGMGMAASMGSFLLAAGADGKRFALPNSEIMIHQPLGGAQGQATEIEIAAR------- 147 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + R++SE P + T Sbjct: 148 -----------------------HILKIKERMNRILSEKTGQPIEVIARDTDRDNFMTAD 184 Query: 217 EAKKVGLIDVVGGQEEVWQ 235 EAK+ GLID + + + Sbjct: 185 EAKEYGLIDDIISSKNALK 203 >gi|163743918|ref|ZP_02151288.1| Protease subunit of ATP-dependent Clp protease [Phaeobacter gallaeciensis 2.10] gi|161382763|gb|EDQ07162.1| Protease subunit of ATP-dependent Clp protease [Phaeobacter gallaeciensis 2.10] Length = 202 Score = 40.4 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 24/190 (12%), Positives = 61/190 (32%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + + ++SPGG +G +I+ +Q +K + Sbjct: 30 IIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + + S V + Sbjct: 90 STLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMVHQPSGGFQGQ---------------- 133 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + +E K + + ++ + L + E Sbjct: 134 ---ATDIMIHAEETLKLKKRLNEIYVKHTGQEYDKI----------VDALERDNFMSPEE 180 Query: 218 AKKVGLIDVV 227 AK GLID + Sbjct: 181 AKDFGLIDEI 190 >gi|116811647|emb|CAL25990.1| CG5045 [Drosophila melanogaster] Length = 253 Score = 40.4 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D S ++ ++ + ++ + + ++SPGG AG AI+ +Q VK Sbjct: 55 IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A + + + + + I +K Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKR 174 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + R T E Sbjct: 175 --------------------QLTNIYVKHAKNTYEEMCGRMERD---------HFMTPEE 205 Query: 218 AKKVGLIDVV 227 AK +G+ID V Sbjct: 206 AKVLGIIDHV 215 >gi|88810607|ref|ZP_01125864.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrococcus mobilis Nb-231] gi|88792237|gb|EAR23347.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrococcus mobilis Nb-231] Length = 214 Score = 40.4 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED Q LI ++ + ++ + + ++SPGG AG AI+ +Q VK Sbjct: 42 VIFLVGPVEDHQANLLIAQLLFLESENPDKDIHLYINSPGGVVSAGLAIYDTMQFVKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A+ S + L + Sbjct: 102 STVCLGQAASMGALLLTGGAAGKRYCLPNSRIMIHQPLGGFQGQ---------------- 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 V++ + + +++++ + ++ + G E Sbjct: 146 --------------ATDVEIHAREILAMRERLNQILAQHTGQDIETIQQDTERDNFMGPE 191 Query: 218 AKK-VGLIDVV 227 A + G++D V Sbjct: 192 AAQSYGIVDGV 202 >gi|307244056|ref|ZP_07526175.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptostreptococcus stomatis DSM 17678] gi|306492580|gb|EFM64614.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptostreptococcus stomatis DSM 17678] Length = 194 Score = 40.4 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 5/150 (3%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + DD + + ++SPGGS AG AI+ +Q +K I + A Sbjct: 44 VVAQLLFLEADDPDKDIHLYINSPGGSVTAGLAIYDTMQYIKPDVSTICVGMAASMGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGV----LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 L + A A S + Q V+ L + + + + + P+ Sbjct: 104 LAAGAKGKRYALPNSTIMIHQPLGGSRGQATDVEIHTKFLLNTKEKLNTILSQRTGQPYD 163 Query: 169 EVNPK-AVQMMQDVVDSSYHWFVRLVSESR 197 V + V E+R Sbjct: 164 VVKENTERDNFMTADQGQAFGIIDHVIENR 193 >gi|146337660|ref|YP_001202708.1| ATP-dependent Clp protease proteolytic subunit [Bradyrhizobium sp. ORS278] gi|146190466|emb|CAL74465.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) [Bradyrhizobium sp. ORS278] Length = 205 Score = 40.4 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 63/197 (31%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++ D+ + ++ + ++ + + ++SPGG +G A++ +Q VK Sbjct: 33 IVFLNGEVNDTVSALVCAQLLFLEAENPKRPIHLYINSPGGVVTSGLAMYDTMQFVKAPV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + S+ + + + P + L + + Sbjct: 93 HTLC--------------------MGTARSMGSFLLMAGE-PGERTALPNASLHVHQPLG 131 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + +RL +E Y+ L T Sbjct: 132 GFQGQASDIMIHAREMEQ---------TKRRMIRLYAEHCGRSYEDVERTLDRDHFMTAD 182 Query: 217 EAKKVGLIDVVGGQEEV 233 EA+ GLID V Q ++ Sbjct: 183 EAQDWGLIDRVVKQRDL 199 >gi|110456662|gb|ABG74781.1| ATP-dependent protease catalytic subunit [Jasminum leratii] Length = 261 Score = 40.4 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 29/188 (15%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + E+I + ++ D L ++SPGG+ + G AI+ A++ + I + + Sbjct: 79 ANEIIAAMLYLNMQDPLQRLYFFINSPGGAVHDGLAIYDAMKYIDQEIHTICYGQAASMA 138 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 + L S A A S+ V+ P + P +L ++ Sbjct: 139 SVLLASGAKGHRGAYPHSM-----VMMHQPALAPTRGRLQRLVRERNC------------ 181 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV-G 228 + V E+R L + EA++ G+ID + G Sbjct: 182 -----------LNILKERIIDIYVCETRKDRLVIERTLERDHYMSPIEAREYGIIDKIYG 230 Query: 229 GQEEVWQS 236 G + + Sbjct: 231 GIFDKIEE 238 >gi|150402944|ref|YP_001330238.1| hypothetical protein MmarC7_1020 [Methanococcus maripaludis C7] gi|150033974|gb|ABR66087.1| protein of unknown function DUF114 [Methanococcus maripaludis C7] Length = 274 Score = 40.0 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 IEDS+E++ I D ++ +PGG A E I A+++ K + VI + Sbjct: 66 TIEDSEEILRAIRMTPEDMPIDLIL---HTPGGLVLASEQIATALKEHKAKTTVIIPHYA 122 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 M+ G LI+ A++ I+ + +++G + ++ + Sbjct: 123 MSG--GSLIALAADEIIIDKNAVMGPVDPQVGQYPAASIINAINTKY 167 >gi|78061562|ref|YP_371470.1| membrane-bound serine protease [Burkholderia sp. 383] gi|77969447|gb|ABB10826.1| Membrane-bound serine protease [Burkholderia sp. 383] Length = 525 Score = 40.0 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 69/199 (34%), Gaps = 9/199 (4%) Query: 38 VARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK- 94 V I I G I + ++ ++R +R + A+ + L +PGG + I +AI Sbjct: 58 VVVIPINGAIGPASADFIVRSLDRAARQHAPLAI-LQLDTPGGLDTSMRQIIKAILGSPV 116 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK- 153 + AASAG I AS+ A + +G+ + + Sbjct: 117 PVAAFVAPGGARAASAGTYIVYASHFAAMAPGTNLGAASPVQFGIGGAAPPGGNPAAPHA 176 Query: 154 ---SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSD 209 + +S + + + ++R +++ R + + + Sbjct: 177 PAGTSGASGASDAAATQAALPTDTQSTEIRKAMQDASAYIRGLAQLRGRNAEWGERAVRE 236 Query: 210 GRIWTGAEAKKVGLIDVVG 228 + EA+ ++D++ Sbjct: 237 AVSLSANEARTQHVVDLIA 255 >gi|42520204|ref|NP_966119.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia endosymbiont of Drosophila melanogaster] gi|60389690|sp|Q73I59|CLPP_WOLPM RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|42409942|gb|AAS14053.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia endosymbiont of Drosophila melanogaster] Length = 208 Score = 40.0 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IED+ ++ ++ + ++ + + ++SPGG AG +I+ +Q + Sbjct: 29 IIFVTGPIEDNMASVIVAQLLFLESENPNKDICMYINSPGGVVTAGLSIYDTMQYINPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + S + Y ++ I V Sbjct: 89 STLCIGQAASMGSLLLAAGTKGKRYSLPHSRIMIHQPSGGYHGQATDIEIHANEILRV-- 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216 ++ + K + + + Sbjct: 147 ----------------------------KKKLNQIYEKHTGNSLKKIEGMMERDKFMDPE 178 Query: 217 EAKKVGLIDVV 227 EA+K+GLID V Sbjct: 179 EARKIGLIDRV 189 >gi|332157739|ref|YP_004423018.1| nfeD protein [Pyrococcus sp. NA2] gi|331033202|gb|AEC51014.1| nfeD protein [Pyrococcus sp. NA2] Length = 439 Score = 40.0 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 6/93 (6%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSS 75 + L +V + + S V IRGQI + I + +A A+I+ L + Sbjct: 5 ILLFIVLLTLVASPSLASNVVYVAQIRGQITSYTYDQFDRYITIAEEN-NARAIIIELDT 63 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 PGG +A+ IQ+++ K + Sbjct: 64 PGG---RADAMMNIIQRIQQAKVPVIVFVYPPG 93 >gi|195434156|ref|XP_002065069.1| GK15263 [Drosophila willistoni] gi|194161154|gb|EDW76055.1| GK15263 [Drosophila willistoni] Length = 255 Score = 40.0 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 59/190 (31%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D S ++ ++ + ++ + + ++SPGG AG AI+ +Q VK Sbjct: 55 IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A + + + + + + + + + Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSG---GAQGQATDILIHAEEIIK 171 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + +M Q + T E Sbjct: 172 IKRQLTAIYVKHAKNSYDEMCQRMERDH--------------------------FMTPEE 205 Query: 218 AKKVGLIDVV 227 AK +G+ID V Sbjct: 206 AKTLGIIDHV 215 >gi|194859835|ref|XP_001969460.1| GG10114 [Drosophila erecta] gi|190661327|gb|EDV58519.1| GG10114 [Drosophila erecta] Length = 253 Score = 40.0 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D S ++ ++ + ++ + + ++SPGG AG AI+ +Q VK Sbjct: 55 IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A + + + + + I +K Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKR 174 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + R T E Sbjct: 175 --------------------QLTNIYVKHAKNTYEEMCGRMERD---------HFMTPEE 205 Query: 218 AKKVGLIDVV 227 AK +G+ID V Sbjct: 206 AKVLGIIDHV 215 >gi|12719432|ref|NP_075503.1| protease [Staphylococcus phage phiSLT] gi|21283128|ref|NP_646216.1| protease [Staphylococcus aureus subsp. aureus MW2] gi|29028649|ref|NP_803338.1| scaffolding protease [Staphylococcus phage phi 12] gi|49485840|ref|YP_043061.1| phage protease [Staphylococcus aureus subsp. aureus MSSA476] gi|57651296|ref|YP_185261.1| prophage L54a, Clp protease, putative [Staphylococcus aureus subsp. aureus COL] gi|66395523|ref|YP_239858.1| ORF015 [Staphylococcus phage 42E] gi|66395672|ref|YP_240004.1| ORF016 [Staphylococcus phage 47] gi|87161020|ref|YP_494099.1| phiSLT ORF257-like protein, putative prophage protease [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195249|ref|YP_500052.1| scaffolding protease [Staphylococcus aureus subsp. aureus NCTC 8325] gi|156603996|ref|YP_001429942.1| putative protease [Staphylococcus phage tp310-2] gi|161509680|ref|YP_001575339.1| bacteriophage protease [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|209363589|ref|YP_002268007.1| prohead protease [Staphylococcus phage phi2958PVL] gi|215401148|ref|YP_002332403.1| putative scaffold protein [Staphylococcus phage phiSauS-IPLA35] gi|253315475|ref|ZP_04838688.1| phiSLT ORF257-like protein, putative prophage protease [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|257432454|ref|ZP_05608817.1| scaffolding protease [Staphylococcus aureus subsp. aureus E1410] gi|258420298|ref|ZP_05683245.1| scaffolding protease [Staphylococcus aureus A9719] gi|258448837|ref|ZP_05696947.1| scaffolding protease [Staphylococcus aureus A6224] gi|282911087|ref|ZP_06318889.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus WBG10049] gi|282919223|ref|ZP_06326958.1| phage protease [Staphylococcus aureus subsp. aureus C427] gi|284024509|ref|ZP_06378907.1| phiSLT ORF257-like protein, putative prophage protease [Staphylococcus aureus subsp. aureus 132] gi|294848478|ref|ZP_06789224.1| phage protease [Staphylococcus aureus A9754] gi|295407559|ref|ZP_06817352.1| phage protease [Staphylococcus aureus A8819] gi|296276330|ref|ZP_06858837.1| phiSLT ORF257-like protein, putative prophage protease [Staphylococcus aureus subsp. aureus MR1] gi|297207829|ref|ZP_06924263.1| bacteriophage protease [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246589|ref|ZP_06930422.1| phage protease [Staphylococcus aureus A8796] gi|297591011|ref|ZP_06949649.1| bacteriophage protease [Staphylococcus aureus subsp. aureus MN8] gi|300911915|ref|ZP_07129358.1| bacteriophage protease [Staphylococcus aureus subsp. aureus TCH70] gi|12697862|dbj|BAB21734.1| protease [Staphylococcus phage phiSLT] gi|18920573|gb|AAL82313.1| scaffolding protease [Staphylococcus phage phi 12] gi|21204568|dbj|BAB95264.1| protease [Staphylococcus aureus subsp. aureus MW2] gi|49244283|emb|CAG42710.1| phage protease [Staphylococcus aureus subsp. aureus MSSA476] gi|57285482|gb|AAW37576.1| prophage L54a, Clp protease, putative [Staphylococcus aureus subsp. aureus COL] gi|62636016|gb|AAX91127.1| ORF015 [Staphylococcus phage 42E] gi|62636096|gb|AAX91207.1| ORF016 [Staphylococcus phage 47] gi|87126994|gb|ABD21508.1| phiSLT ORF257-like protein, putative prophage protease [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202807|gb|ABD30617.1| scaffolding protease [Staphylococcus aureus subsp. aureus NCTC 8325] gi|154818082|gb|ABS87509.1| putative protease [Staphylococcus phage tp310-2] gi|160368489|gb|ABX29460.1| bacteriophage protease [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|208973090|dbj|BAG74406.1| prohead protease [Staphylococcus phage phi2958PVL] gi|215260499|gb|ACJ64629.1| gp40 [Staphylococcus phage phiSauS-IPLA35] gi|257283333|gb|EEV13465.1| scaffolding protease [Staphylococcus aureus subsp. aureus E1410] gi|257843723|gb|EEV68125.1| scaffolding protease [Staphylococcus aureus A9719] gi|257857874|gb|EEV80765.1| scaffolding protease [Staphylococcus aureus A6224] gi|282317033|gb|EFB47407.1| phage protease [Staphylococcus aureus subsp. aureus C427] gi|282324782|gb|EFB55092.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus WBG10049] gi|294824504|gb|EFG40927.1| phage protease [Staphylococcus aureus A9754] gi|294967578|gb|EFG43614.1| phage protease [Staphylococcus aureus A8819] gi|296887545|gb|EFH26444.1| bacteriophage protease [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176547|gb|EFH35812.1| phage protease [Staphylococcus aureus A8796] gi|297575897|gb|EFH94613.1| bacteriophage protease [Staphylococcus aureus subsp. aureus MN8] gi|300886161|gb|EFK81363.1| bacteriophage protease [Staphylococcus aureus subsp. aureus TCH70] gi|302333119|gb|ADL23312.1| caseinolytic phage protease [Staphylococcus aureus subsp. aureus JKD6159] gi|312438083|gb|ADQ77154.1| bacteriophage protease [Staphylococcus aureus subsp. aureus TCH60] gi|315128434|gb|EFT84442.1| bacteriophage protease [Staphylococcus aureus subsp. aureus CGS03] gi|315197736|gb|EFU28070.1| bacteriophage protease [Staphylococcus aureus subsp. aureus CGS01] gi|329729413|gb|EGG65818.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus 21189] gi|329730627|gb|EGG67012.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Staphylococcus aureus subsp. aureus 21193] Length = 257 Score = 40.0 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 38/221 (17%) Query: 41 IAIRGQIEDSQELIERI------ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I I G I + + ++ + + V ++S GGS + G AI+ ++ Sbjct: 20 IFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHP 79 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + V +AAS +I+ + + I + S + Sbjct: 80 AKIN--IYVDALAASIASVIAMSGDTIFMHKNSFLMIHN--------------------- 116 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213 + + + + + +++++ + + D W Sbjct: 117 --------SWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWL 168 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 T EA GLID + G E+ S+ + +D Sbjct: 169 TAEEALSFGLIDEILGANEIAASISKEQYKRFENVPEDLKK 209 >gi|239828281|ref|YP_002950905.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus sp. WCH70] gi|259585956|sp|C5D7M9|CLPP_GEOSW RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|239808574|gb|ACS25639.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus sp. WCH70] Length = 196 Score = 40.0 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 65/196 (33%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + ++ ++ ++ +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IIILGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIYDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A S + L ++ Sbjct: 89 STICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEIAAKR------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + R+++E+ P + T Sbjct: 143 ------------------------ILFLRDKLNRILAENTGQPVEVIERDTDRDNFMTAQ 178 Query: 217 EAKKVGLIDVVGGQEE 232 +A++ G+ID V + + Sbjct: 179 KAQEYGIIDRVLTRID 194 >gi|322384476|ref|ZP_08058158.1| ATP-dependent Clp protease proteolytic subunit-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150686|gb|EFX44161.1| ATP-dependent Clp protease proteolytic subunit-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 193 Score = 40.0 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 61/179 (34%), Gaps = 31/179 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + +I ++ ++ D + + ++SPGGS AG AI+ +Q +K I + Sbjct: 41 ANSIIAQLLFLAAQDPDKDISLYINSPGGSITAGMAIYDTMQYIKPDVSTICVGMAASMG 100 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L + A A S V L ++ Sbjct: 101 AFLLNAGAVGKRYALPNSEVMIHQPLGGAEGQATDIEIRAKR------------------ 142 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 + R++SE P +K +D + + +EAK+ GLID V Sbjct: 143 ------------IIKMRENLNRILSERTGQPLEKIERDTDRDYFMSASEAKEYGLIDKV 189 >gi|15604378|ref|NP_220894.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia prowazekii str. Madrid E] gi|6225160|sp|Q9ZD29|CLPP_RICPR RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|3861070|emb|CAA14970.1| ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT (clpP) [Rickettsia prowazekii] gi|292572133|gb|ADE30048.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia prowazekii Rp22] Length = 201 Score = 40.0 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 53/188 (28%), Gaps = 31/188 (16%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + ++ + + ++SPGG AG AI+ +Q +K + + + + Sbjct: 44 IVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQFIKPKVATLCIGQACSMGSLL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + + S + Y ++ + Sbjct: 104 LCGGEHGMRYSLPHSRIMIHQPSGGYKGQATDIEIHARETLKI----------------- 146 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQE 231 L S+ + + EAKK GL+D + Sbjct: 147 -------------KRLLNELYSKHTKQELKYIEKSMERDNFMSSEEAKKFGLVDNIISSR 193 Query: 232 EVWQSLYA 239 + L Sbjct: 194 DTIAFLAQ 201 >gi|238762757|ref|ZP_04623726.1| ATP-dependent Clp protease proteolytic subunit [Yersinia kristensenii ATCC 33638] gi|238699062|gb|EEP91810.1| ATP-dependent Clp protease proteolytic subunit [Yersinia kristensenii ATCC 33638] Length = 647 Score = 40.0 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 21/211 (9%), Positives = 55/211 (26%), Gaps = 40/211 (18%) Query: 32 EDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + + A I I +I +++ ++ + + + + SPGG + G AI+ Sbjct: 2 KASGEKSADIYIYEEIGYWGVTARQFASSLKALGD---IDHINLRIHSPGGDVFEGIAIY 58 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + K V + S+ I ++ + Sbjct: 59 NLLNSHPASKTVYID--------------------GLAASMASVIAMVGNPVIMPENAMM 98 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 + + ++ + ++ ++ V+ Sbjct: 99 MIHKPWGITGGDANDMRDYADLLDKVE------------GVLIPSYAKKTGKTPEELAVM 146 Query: 208 SDGRIW-TGAEAKKVGLIDVVGGQEEVWQSL 237 W T E + G D + + + Sbjct: 147 LGEETWLTAQECVEHGFADQLLPSMQAMARI 177 >gi|163736126|ref|ZP_02143545.1| Endopeptidase Clp [Phaeobacter gallaeciensis BS107] gi|161389996|gb|EDQ14346.1| ATP-dependent Clp protease proteolytic subunit [Phaeobacter gallaeciensis BS107] Length = 202 Score = 40.0 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 23/190 (12%), Positives = 61/190 (32%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + + ++SPGG +G +I+ +Q +K + Sbjct: 30 IIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + + S V + Sbjct: 90 STLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMVHQPSGGFQGQ---------------- 133 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + +E K + + ++ + L + + Sbjct: 134 ---ATDIMIHAEETLKLKKRLNEIYVKHTGQEYDKI----------VDALERDNFMSPED 180 Query: 218 AKKVGLIDVV 227 AK GLID + Sbjct: 181 AKDFGLIDEI 190 >gi|283469602|emb|CAQ48813.1| protease [Staphylococcus aureus subsp. aureus ST398] gi|283470729|emb|CAQ49940.1| protease [Staphylococcus aureus subsp. aureus ST398] Length = 257 Score = 40.0 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 38/221 (17%) Query: 41 IAIRGQIEDSQELIERI------ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I I G I + + ++ + + V ++S GGS + G AI+ ++ Sbjct: 20 IFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHP 79 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + V +AAS +I+ + + I + S + Sbjct: 80 AKIN--IYVDALAASIASVIAMSGDTIFMHKNSFLMIHN--------------------- 116 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213 + + + + + +++++ + + D W Sbjct: 117 --------SWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWL 168 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 T EA GLID + G E+ S+ + +D Sbjct: 169 TAEEALSFGLIDEILGANEIAASISKEQYKRFENVPEDLKK 209 >gi|189500114|ref|YP_001959584.1| hypothetical protein Cphamn1_1169 [Chlorobium phaeobacteroides BS1] gi|189495555|gb|ACE04103.1| protein of unknown function DUF107 [Chlorobium phaeobacteroides BS1] Length = 434 Score = 40.0 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 37/83 (44%), Gaps = 3/83 (3%) Query: 12 YVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATAL 69 V+L +TV + + + V ++++G + + I++ + + A+ Sbjct: 2 IVLLLFAAVTVFSSTLRAEEAKGNKTVLFLSLQGTVNPGSADFFERAIDQAEK-EKVHAI 60 Query: 70 IVSLSSPGGSAYAGEAIFRAIQK 92 +V L +PGG + A+ +++ Sbjct: 61 LVELDTPGGLVSSLRAMVQSVLA 83 >gi|326338731|gb|EGD62551.1| Prophage Clp protease-like protein [Escherichia coli O157:H7 str. 1125] Length = 629 Score = 40.0 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 81/256 (31%), Gaps = 50/256 (19%) Query: 38 VARIAIRGQIEDSQELIERI-ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 V + I +I + + I+ + + + + + SPGG + G AI+ A++ + Sbjct: 13 VVHVRIYDEIGGYGVKASALTDEINACGNVSEIHLRIHSPGGDIFEGLAIYNALKNHPAK 72 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 K I + MAAS I+ + IV E +++ V Sbjct: 73 K--IVHIEGMAASMASFIAMCGDHIVMPENAMMMIHAPRGVTAGVSG------------- 117 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-G 215 V+ D++D + + + + W G Sbjct: 118 -----------------DVRRFADLMDKLGDTMAETYAGRTGRSKQEITAMMEAETWMDG 160 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDT 275 E K G D EV ++ A+ +S K I S++ Sbjct: 161 NECKANGFAD------EVIAAITAMARIES----------KRIGDFSNMPEKIKSMISQK 204 Query: 276 IPLMKQTKVQGLWAVW 291 +Q ++ G+ ++ Sbjct: 205 TTSGEQERLNGIRELF 220 >gi|224178037|ref|YP_002600892.1| proteolytic subunit 2 of clp protease [Pyramimonas parkeae] gi|215882704|gb|ACJ71077.1| proteolytic subunit 2 of clp protease [Pyramimonas parkeae] Length = 198 Score = 40.0 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 56/180 (31%), Gaps = 31/180 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + +L+ + +S +D + L + ++SPGGS G A++ A+Q V I Sbjct: 44 ANQLVGIMLYLSAEDESKRLYIYINSPGGSVTCGIAVYDAMQHVNASVTTICV------- 96 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 + + S + + L + I + +E Sbjct: 97 --------------GIAASMASFVLAGGERGHRLALSHARIMIHQPQGGSQGQASEVTAE 142 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVG 228 ++ +E + R +G EAK+ GL+D V Sbjct: 143 AEEVMRI---------RRQVGQIYAERTGQRLTTIARDMDRDRFMSGREAKEYGLVDQVA 193 >gi|218510664|ref|ZP_03508542.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli Brasil 5] gi|327192437|gb|EGE59394.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli CNPAF512] Length = 203 Score = 40.0 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D+ + ++ + ++ + + ++SPGG +G A++ ++ ++ Sbjct: 33 IIFLNGEVNDTVSALVCAQLLFLEAENPNKPINLYINSPGGVVTSGLAMYDTMRFIRAPV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + + + + G G P + + + Sbjct: 93 --------------HTLCMGTARSMGSFLLMAGEPGGRAALPNASILIHQPSGGFQG--- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + RL +E Y+ + R T Sbjct: 136 -------------QASDMLIHAEEILKTKQRMTRLYAEHCGRSYEDFEHGMDRDRFMTAE 182 Query: 217 EAKKVGLIDVV 227 EA + GLID + Sbjct: 183 EALEWGLIDRI 193 >gi|319898776|ref|YP_004158869.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella clarridgeiae 73] gi|319402740|emb|CBI76287.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella clarridgeiae 73] Length = 210 Score = 40.0 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 27/210 (12%), Positives = 63/210 (30%), Gaps = 39/210 (18%) Query: 40 RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G +ED+ ++ ++ + ++ + + ++SPGG +G AI+ +Q ++ Sbjct: 37 IIFINGPVEDNMAMLVCAQLLFLEAENPKKEINLYINSPGGVVTSGMAIYDTMQFIRPSV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + A+ A + + Sbjct: 97 STLCMGQAASMGSLLLTAGATGRRFALPNARIMVHQPSG--------------------- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + Y+ L T Sbjct: 136 -------GFQGQASDIERHA--QDIVKMKRRLNEIYVQHTGQSYEVIEKTLDRDHFMTAE 186 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 E+K+ GLID +V Q ++ Sbjct: 187 ESKQFGLID------DVIQYRAETEKEEKD 210 >gi|325577258|ref|ZP_08147742.1| ATP-dependent Clp protease, protease subunit [Haemophilus parainfluenzae ATCC 33392] gi|325160840|gb|EGC72961.1| ATP-dependent Clp protease, protease subunit [Haemophilus parainfluenzae ATCC 33392] Length = 193 Score = 40.0 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 VIFLSGEVEDRMANLIVAQLLFLESEDPKKDINIYINSPGGSVTAGMAIYDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A + V L + Sbjct: 89 RTLCIGQACSMGAFLLAGGTAGKRAALPNARVMIHQPLGGFRGQ---------------- 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +Q+ + ++ ++ +D + + Sbjct: 133 --------------ASDIQIHAQEILKIKQTLNERLAFHTGQSIERIEKDTDRDNFMSAE 178 Query: 217 EAKKVGLIDVV 227 EAK GL+D V Sbjct: 179 EAKAYGLVDDV 189 >gi|225867968|ref|YP_002743916.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus equi subsp. zooepidemicus] gi|225871117|ref|YP_002747064.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus equi subsp. equi 4047] gi|254763801|sp|C0M7M8|CLPP_STRE4 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|259585965|sp|C0MGT5|CLPP_STRS7 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|225700521|emb|CAW94984.1| putative ATP-dependent Clp protease proteolytic subunit [Streptococcus equi subsp. equi 4047] gi|225701244|emb|CAW98203.1| putative ATP-dependent Clp protease proteolytic subunit [Streptococcus equi subsp. zooepidemicus] Length = 196 Score = 40.0 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 26/197 (13%), Positives = 59/197 (29%), Gaps = 31/197 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + + Sbjct: 87 QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + H ++++++ + ++ W + Sbjct: 145 --------------------------KTRHRLEKILAQNAGKTIKQIHKDAERDYWMSAE 178 Query: 217 EAKKVGLIDVVGGQEEV 233 E G ID + E+ Sbjct: 179 ETLAYGFIDEIMENNEL 195 >gi|323484093|ref|ZP_08089463.1| ATP-dependent Clp protease [Clostridium symbiosum WAL-14163] gi|323402535|gb|EGA94863.1| ATP-dependent Clp protease [Clostridium symbiosum WAL-14163] Length = 236 Score = 40.0 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 62/192 (32%), Gaps = 37/192 (19%) Query: 43 IRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 + G+I D E+ ++ + A + V ++SPGG +A I+ + + + Sbjct: 21 LNGEISDETWFGDEVTPKLFEKELNAGAGDVTVWINSPGGDVFAAAQIYNMLMEY--KGD 78 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 V +V +AASA +I+ A ++ + ++ ++ Sbjct: 79 VTVKVDALAASAASVIAMAGTSVLISPVGMMMIHN------------------PMTIAIG 120 Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAE 217 K ++ + + + L D W + Sbjct: 121 DSKEMQKAGEMLDE------------VKESIMNAYEIKTGLSRARISHLMDAESWFNAKK 168 Query: 218 AKKVGLIDVVGG 229 A ++G D + G Sbjct: 169 AVELGFADGILG 180 >gi|219684233|ref|ZP_03539177.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia garinii PBr] gi|219685103|ref|ZP_03539923.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia garinii Far04] gi|219672222|gb|EED29275.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia garinii PBr] gi|219673199|gb|EED30218.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia garinii Far04] Length = 197 Score = 40.0 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + +I ++ + +DS + + L+SPGGS AG AI+ +Q +K Sbjct: 33 IIFLSGEINDPKADTVIAQLLFLESEDSNKDIYLYLNSPGGSITAGLAIYDTMQYIKPDV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 I + A L A + S + Sbjct: 93 RTICIGQAASMGAFLLAGGARGKRESLAYSRIMIHQPWG 131 >gi|116243161|sp|Q1RJH2|CLPP_RICBR RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp Length = 227 Score = 40.0 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 30/204 (14%), Positives = 61/204 (29%), Gaps = 34/204 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IED + + ++ + ++ + + ++SPGG AG AI+ +Q +K + Sbjct: 51 IIFVCGPIEDHMANLITAQLLFLEAENPEKDIYMYINSPGGVVTAGLAIYDTMQYIKPKV 110 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + S V Y ++ +K Sbjct: 111 ATLCIGQACSMGSFLLCGGEKGMRYSLPHSRVMIHQPSGGYRGQATDIEIHAQETLKIK- 169 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 L S+ + + Sbjct: 170 -----------------------------KILNSLYSKHTGQDVKHVEKSMERDNFMSPE 200 Query: 217 EAKKVGLIDVVGGQEEVWQSLYAL 240 EAKK G+ID + + + L Sbjct: 201 EAKKFGIIDKIITHRD-IKLLKDK 223 >gi|149182480|ref|ZP_01860954.1| TepA [Bacillus sp. SG-1] gi|148849811|gb|EDL63987.1| TepA [Bacillus sp. SG-1] Length = 103 Score = 40.0 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 9/82 (10%) Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD---------GRIWTGAEAKKVGLIDV 226 + +D V V+ + + L G G +A K GLID Sbjct: 16 PQTFEYLDKMQDRVVNFVTRHSKVTEEDFKELMFAKGNLTRDIGTNVVGEDAVKYGLIDG 75 Query: 227 VGGQEEVWQSLYALGVDQSIRK 248 VGG E + L L + K Sbjct: 76 VGGVGEAIKKLNELIELKGGTK 97 >gi|325662072|ref|ZP_08150691.1| hypothetical protein HMPREF0490_01429 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471735|gb|EGC74954.1| hypothetical protein HMPREF0490_01429 [Lachnospiraceae bacterium 4_1_37FAA] Length = 275 Score = 40.0 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 72/226 (31%), Gaps = 37/226 (16%) Query: 41 IAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 + + G I + + ++ + + + + V ++SPGG A I+ + + Sbjct: 28 LELYGTIAEESWFDDDFTPQMFKDELNAGSGDITVWINSPGGDCVAAAQIYNMLANY--K 85 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 V ++ +AASA +I+ A + ++ + S++ ++K + V Sbjct: 86 GNVTVKIDGIAASAASVIAMAGSTVLMSPVSMMMIHNPATFAFGDHAEMEKAIEMLDGV- 144 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-G 215 + + + K L D W Sbjct: 145 -----------------------------KDSIINAYTLKTGMSRAKLSRLMDAETWMDA 175 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 +A ++G D + + E + + D KD N + F Sbjct: 176 TKAVELGFADNIITKNEFPKKEESKEDDSKKSTEKDVNTSNSVLFS 221 >gi|255589435|ref|XP_002534960.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis] gi|223524291|gb|EEF27423.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis] Length = 435 Score = 40.0 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 26/198 (13%), Positives = 55/198 (27%), Gaps = 33/198 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 268 VIFLVGPVNDMTANLVVAQLLFLEAENPDKDISLYINSPGGSVTAGMSIYDTMQFIKPDV 327 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A S V L + ++ Sbjct: 328 STLCIGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKE------ 381 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + +++ D + Sbjct: 382 ------------------------ILYLKDKLNGIMAHHTGQNIDTIANDTDRDNFMSAD 417 Query: 217 EAKKVGLIDVVGGQEEVW 234 AK GL+D V Sbjct: 418 AAKAYGLVDQVIAARSAV 435 >gi|118464428|ref|YP_880241.1| acyl-CoA dehydrogenase [Mycobacterium avium 104] gi|254773867|ref|ZP_05215383.1| putative acyl-CoA dehydrogenase [Mycobacterium avium subsp. avium ATCC 25291] gi|118165715|gb|ABK66612.1| putative acyl-CoA dehydrogenase [Mycobacterium avium 104] Length = 715 Score = 40.0 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 18/242 (7%) Query: 63 DDSATALI-VSLSSPGGSAYAGEA-----IFRAIQKVKNRKPVITEVHEMAASAGYLISC 116 D A ++ ++L P GSA + A++++ K IT V +A + Sbjct: 9 DKDADGIVTLTLDDPTGSANVMNEHYKESMHNAVERLVAEKDSITGVVITSAKKTFFAGG 68 Query: 117 ASNIIV-AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-------PMKAEPSPFS 168 ++ + + + L+ LG + + + + Sbjct: 69 DLKSMINLGPENAGEAFDTVEAVKRDLRALETLGKPVVAAINGAALGGGLEIALACHHRI 128 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSE---SRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 + K + + V V+ I +LS G + +AK++GL+D Sbjct: 129 AADVKGLVVGLPEVTLGLLPGGGGVTRTVRMFGIQNAFMNILSQGTRFKPDKAKEIGLVD 188 Query: 226 VV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + G EE+ + A + W+ + + + + P + + ++ Sbjct: 189 ELVGSVEELVPAAKAWIKANPDAHEQPWDKKGYKMPGGTPSSPALAGILPSFPALLKKQL 248 Query: 285 QG 286 +G Sbjct: 249 KG 250 >gi|307611846|emb|CBX01559.1| hypothetical protein LPW_32461 [Legionella pneumophila 130b] Length = 501 Score = 40.0 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 36/248 (14%), Positives = 81/248 (32%), Gaps = 35/248 (14%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRD 63 K ++T Y+ + L +V S + + I+G I + L I+ Sbjct: 65 KFMQTSYIFIFLTLFLLVGLQTSFAA-----KIVELNIKGPIGPATADYLERGIKSAQD- 118 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 A +++ + +PGG ++ IQ I + Sbjct: 119 --ADLIVILIDTPGGL---YDSTRNIIQLFLLSDVPIVTYVSPTG----------ARAAS 163 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 A T L+ + + P + + K M++ V Sbjct: 164 AGTYLMYASTLAAMAPGTQMGAASPVSLGTGFSEGEK----------DEKKKSTMENKVT 213 Query: 184 SSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALG 241 +R +++ R D +++G+ T EA G+++ + ++++ + + Sbjct: 214 HDAVATIRSLAQLRGRDLDFAEKAVTEGKSITANEALSKGVVNYIAKNRDDLLSQINGIK 273 Query: 242 VDQSIRKI 249 V Q+ + I Sbjct: 274 VSQNNKTI 281 >gi|170720927|ref|YP_001748615.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida W619] gi|325274289|ref|ZP_08140400.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas sp. TJI-51] gi|226706466|sp|B1J692|CLPP_PSEPW RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|169758930|gb|ACA72246.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas putida W619] gi|324100572|gb|EGB98307.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas sp. TJI-51] Length = 213 Score = 40.0 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 45 VIFLVGPVEDYMANLVVAQMLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + ++ I ++ Sbjct: 105 STICIGQACSMGAFLLAAGAKGKRHCLPNSRVMIHQPLGGFQGQATDIEIHAQEILNI-- 162 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 L++ + + + Sbjct: 163 ----------------------------KARLNELLAYHTGQDLETIKRDTERDNFMSAS 194 Query: 217 EAKKVGLIDVV 227 A + GLID V Sbjct: 195 RAAEYGLIDSV 205 >gi|256074339|ref|XP_002573483.1| peptidase Clp (S14 family) [Schistosoma mansoni] gi|238658663|emb|CAZ29715.1| peptidase Clp (S14 family) [Schistosoma mansoni] Length = 632 Score = 40.0 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D + +I ++ + +D T + + ++SPGGS AG AI+ +Q ++ Sbjct: 70 IICLMGAVTDEMAGSVIAQLLFLQSEDKRTPIHLYINSPGGSVTAGLAIYDTMQFIRPPV 129 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + + A S + Sbjct: 130 ATFCIGQASSMGSLLLAAGSHGCRFALPHSSIMVHQPSGSAHGQ---------------- 173 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +++ + + + + + D + T Sbjct: 174 --------------ASDIKIRAEELIRTRSVINTIYERHTKQSQEVIEKWMDRDYFMTAE 219 Query: 217 EAKKVGLIDVV 227 EA G++D V Sbjct: 220 EAVSYGIVDRV 230 >gi|170078453|ref|YP_001735091.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus sp. PCC 7002] gi|169886122|gb|ACA99835.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus sp. PCC 7002] Length = 198 Score = 40.0 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 33/186 (17%) Query: 43 IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102 + +I + ++ ++ + DD + + ++SPGGS AG IF + +V+ I Sbjct: 34 VNDEIANL--IVAQLLFLEADDPEKDIYLYINSPGGSVSAGMGIFDTMNQVRPDVCTICI 91 Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 + A L + A ++ S + L + + + K + K Sbjct: 92 GLAASMGAFLLSAGAKGKRMSLPNSRIMIHQPLG---GAQGQATDIEIQAKEILYLKGKL 148 Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKV 221 ++ P +K + +D + + AEAK Sbjct: 149 NQHL---------------------------ADHTGQPLEKIEIDTDRDFFMSAAEAKDY 181 Query: 222 GLIDVV 227 GLID V Sbjct: 182 GLIDQV 187 >gi|167628597|ref|YP_001679096.1| ATP-dependent clp protease proteolytic subunit [Heliobacterium modesticaldum Ice1] gi|167591337|gb|ABZ83085.1| ATP-dependent clp protease proteolytic subunit [Heliobacterium modesticaldum Ice1] Length = 199 Score = 40.0 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 61/179 (34%), Gaps = 31/179 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 +I ++ + +D + + ++SPGG+ +G AI+ +Q ++ I + A Sbjct: 45 IIAQLLFLEAEDPDKDIHLYINSPGGAITSGFAIYDTMQLIRCDVSTICVGMAASMGAFL 104 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A A+ + + L ++ Sbjct: 105 LAAGAKGKRYASPNAEIMIHQPLGGVKGQATEIE-------------------------- 138 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQ 230 + + + +++++ P ++ +D + + EAK G+ID V Sbjct: 139 ----IHARHILKTRDRLNKILADRTGQPLERIERDTDRDYFMSAEEAKAYGIIDGVMEF 193 >gi|315181806|gb|ADT88719.1| hypothetical protein vfu_B00484 [Vibrio furnissii NCTC 11218] Length = 444 Score = 40.0 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 4/120 (3%) Query: 12 YVMLSLVTLTVVYFSWSSHV-EDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATA 68 ++ SL++ + + + +++ S V IAI G I + +I+ +ER ++ +A A Sbjct: 8 VLLTSLLSFSTLATADTTNAPAAPSQTVPVIAISGAIGPAVGDYVIKELERANQQVNAPA 67 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAGYLISCASNIIVAAETS 127 +IV+L +PGG + I + I + AASAG I A +I A + Sbjct: 68 VIVTLDTPGGLSSTLRDINQHILASDIPVLCLVYPPGARAASAGTYILYACHIAAMAPAT 127 >gi|152968202|ref|YP_001363986.1| endopeptidase Clp [Kineococcus radiotolerans SRS30216] gi|151362719|gb|ABS05722.1| Endopeptidase Clp [Kineococcus radiotolerans SRS30216] Length = 198 Score = 40.0 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I+D +I ++ ++ + S + + ++SPGGSA A AI+ +Q V+ Sbjct: 30 IVFLHGEIDDGVANVVIAQLVHLASESSTAEISLYVNSPGGSATALMAIYDTMQFVQPDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 +A+A L + A E S V L + ++ Sbjct: 90 ATFCVGQAASAAAVLLAAGAPGKRSVLEHSRVLLHQPSGGAQGTAADLQIQAREVLRIR- 148 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + + P ++ L + GA Sbjct: 149 -------------SEIERVL----------------ARHTGHPVERLRADLDRDLVLPGA 179 Query: 217 EAKKVGLIDVVGG 229 EA G+ D V Sbjct: 180 EAVAYGVADRVVT 192 >gi|297621676|ref|YP_003709813.1| ATP-dependent Clp protease proteolytic subunit [Waddlia chondrophila WSU 86-1044] gi|297376977|gb|ADI38807.1| ATP-dependent Clp protease proteolytic subunit [Waddlia chondrophila WSU 86-1044] Length = 196 Score = 40.0 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 52/181 (28%), Gaps = 27/181 (14%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + E+I ++ + D ++ ++SPGGS +G AI+ +Q + + + + Sbjct: 39 ANEIIRKLWYLELKDPGKPILFVINSPGGSVDSGFAIWDQVQMISSPVTTLVTGLAASMG 98 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 + + A + + + D + + +K+ + Sbjct: 99 SVLSLCAAKGKRYVTPQARIMIHQPMIGGVIQGQATDLDIQAREILKTREKLVRIYMDAT 158 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 + + EAK+ GLID + Sbjct: 159 GKDYE---------------------------TIDRAIDRDTWMSAEEAKEFGLIDAIID 191 Query: 230 Q 230 Sbjct: 192 S 192 >gi|41406888|ref|NP_959724.1| FadB_1 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395238|gb|AAS03107.1| FadB_1 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 715 Score = 40.0 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 18/242 (7%) Query: 63 DDSATALI-VSLSSPGGSAYAGEA-----IFRAIQKVKNRKPVITEVHEMAASAGYLISC 116 D A ++ ++L P GSA + A++++ K IT V +A + Sbjct: 9 DKDADGIVTLTLDDPTGSANVMNEHYKESMHNAVERLVAEKDSITGVVITSAKKTFFAGG 68 Query: 117 ASNIIV-AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-------PMKAEPSPFS 168 ++ + + + L+ LG + + + + Sbjct: 69 DLKSMINLGPENAGEAFDTVEAVKRDLRALETLGKPVVAAINGAALGGGLEIALACHHRI 128 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSE---SRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 + K + + V V+ I +LS G + +AK++GL+D Sbjct: 129 AADIKGLVVGLPEVTLGLLPGGGGVTRTVRMFGIQNAFMNILSQGTRFKPDKAKEIGLVD 188 Query: 226 VV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + G EE+ + A + W+ + + + + P + + ++ Sbjct: 189 ELVGSVEELVPAAKAWIKANPDAHEQPWDKKGYKMPGGTPSSPALAGILPSFPALLKKQL 248 Query: 285 QG 286 +G Sbjct: 249 KG 250 >gi|17231849|ref|NP_488397.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC 7120] gi|21759069|sp|Q8YP43|CLPP3_ANASP RecName: Full=Probable ATP-dependent Clp protease proteolytic subunit 3; AltName: Full=Endopeptidase Clp 3 gi|17133493|dbj|BAB76056.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC 7120] Length = 197 Score = 40.0 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 61/187 (32%), Gaps = 33/187 (17%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 + +I + ++I + + +D + + ++SPGG +G AI+ +Q +K+ I Sbjct: 38 DVDDEIAN--QIIAVMLYLDSEDPGKDIYLYINSPGGMVTSGLAIYDTMQHIKSDVVTIC 95 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + + L + +A S + ++ I ++ Sbjct: 96 VGLAASMGSFLLAAGTKGKRMALPHSRIMIHQPSGGTRGQATDIEIEAREILRIRH---- 151 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220 ++ + + + P K D + + EA + Sbjct: 152 --------------------------QLNQIYANNTSQPLAKIEKDMDRDFFMSAQEAME 185 Query: 221 VGLIDVV 227 GLID V Sbjct: 186 YGLIDRV 192 >gi|238898003|ref|YP_002923683.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259585958|sp|C4K4P2|CLPP_HAMD5 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|229465761|gb|ACQ67535.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 215 Score = 40.0 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 59/195 (30%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+E+ + ++ ++ + ++ + + ++SPGG AG +I+ +Q + Sbjct: 42 VIFLTGQVEEHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFITPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A + + V L + ++ Sbjct: 102 STICIGQACSMGAFLLAAGAKSKRYCLPNARVMIHQPLGGFQGQASDIEIHAKE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + L++ + Sbjct: 156 ------------------------ILKVKKRMNDLMAIHTKKTLKIIEKDTERDHFLSAE 191 Query: 217 EAKKVGLIDVVGGQE 231 EAKK GL+D V + Sbjct: 192 EAKKYGLVDCVLTER 206 >gi|187940099|gb|ACD39231.1| protease domain protein [Pseudomonas aeruginosa] Length = 693 Score = 40.0 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 49/184 (26%), Gaps = 33/184 (17%) Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 + T + + + SPGG + G AI+ ++ + +AAS +I+ A Sbjct: 61 RDLKAMGDLTKINLHIHSPGGDVFEGTAIYNLLRNHPASVD--VYIDGLAASMASVIAMA 118 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 + I E +++ ++ ++ Sbjct: 119 GDTIYMPENAMMMVH------------------KPWGIQGGDADDMRRYAELLDKVE--- 157 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQS 236 V + D L W G EA G D + + Sbjct: 158 ---------DTLVMAYANKTGKSADDIKALLKEETWMNGREAVAAGFADQLTEPLQAAAH 208 Query: 237 LYAL 240 L + Sbjct: 209 LSSK 212 >gi|304316359|ref|YP_003851504.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777861|gb|ADL68420.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 194 Score = 40.0 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + +I D ++ ++ + +D + + ++SPGGS + AI+ +Q +K Sbjct: 29 IVFLGEEINDVSASLVVAQLLFLEGEDPDKDIWLYINSPGGSITSAFAIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + +A A L + A + S + L + + + + + Sbjct: 89 VTMCVGMAASAGAFLLAAGAKGKRFSLPNSEIMIHQPLG---GTQGQATDIKIHAERIIK 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 K SE P +K ++ + Sbjct: 146 MKQKLNKIL---------------------------SERTGQPLEKIERDTERDFFMDPE 178 Query: 217 EAKKVGLIDVV 227 EAK GLID + Sbjct: 179 EAKAYGLIDDI 189 >gi|218672149|ref|ZP_03521818.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli GR56] Length = 203 Score = 40.0 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 59/192 (30%), Gaps = 35/192 (18%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D+ + ++ + ++ + + ++SPGG +G A++ ++ ++ Sbjct: 33 IIFLNGEVNDTVSALVCAQLLFLEAENPKKPINLYINSPGGVVTSGLAMYDTMRFIRAPV 92 Query: 98 PVITE-VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 + S + A S++ L Sbjct: 93 HTLCMGTARSMGSFLLMAGEAGERAALPNASILIHQPSGGFQGQASDML----------- 141 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTG 215 + + + + RL +E Y+ + R T Sbjct: 142 --------------------IHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTA 181 Query: 216 AEAKKVGLIDVV 227 EA + GLID + Sbjct: 182 EEALEWGLIDRI 193 >gi|167032910|ref|YP_001668141.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida GB-1] gi|189082463|sp|B0KJG6|CLPP_PSEPG RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|166859398|gb|ABY97805.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas putida GB-1] Length = 213 Score = 40.0 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 58/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 45 VIFLVGPVEDYMANLVVAQMLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L + + I S+ Sbjct: 105 STICIGQACSMGAFLLTAGAKGKRHCLPNSRVMIHQPLGGFQGQATDIQIHAQEILSI-- 162 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 L++ + + + Sbjct: 163 ----------------------------KARLNELLAYHTGQDLETIQRDTERDNFMSAS 194 Query: 217 EAKKVGLIDVV 227 A + GLID V Sbjct: 195 RAAEYGLIDSV 205 >gi|209520426|ref|ZP_03269187.1| conserved hypothetical protein [Burkholderia sp. H160] gi|209499118|gb|EDZ99212.1| conserved hypothetical protein [Burkholderia sp. H160] Length = 189 Score = 40.0 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Query: 36 PHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 V I I G I + ++ ++R + D A ++ L +PGG + I +AI Sbjct: 71 NSVVVIPINGAIGPASADFIVRSLQRAA-DQRAQLAVLQLDTPGGLDTSMRQIIKAI 126 >gi|224533546|ref|ZP_03674135.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia burgdorferi CA-11.2a] gi|224513219|gb|EEF83581.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia burgdorferi CA-11.2a] Length = 194 Score = 40.0 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + +I ++ + +DS+ + + L+SPGGS AG AI+ +Q +K Sbjct: 30 IIFLSGEINDPKADTVIAQLLFLESEDSSKDIYLYLNSPGGSITAGLAIYDTMQYIKPDV 89 Query: 98 PVIT 101 I Sbjct: 90 RTIC 93 >gi|304391391|ref|ZP_07373333.1| Clp protease [Ahrensia sp. R2A130] gi|303295620|gb|EFL89978.1| Clp protease [Ahrensia sp. R2A130] Length = 212 Score = 40.0 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 24/202 (11%), Positives = 59/202 (29%), Gaps = 34/202 (16%) Query: 40 RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G IED ++ ++ + ++ + + ++SPGG AG AI+ +Q +K Sbjct: 37 IIFITGPIEDGMSVLVCAQLLFLEAENPKKEISLYINSPGGVVTAGMAIYDTMQFIKPPV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + ++ + V Sbjct: 97 ATLCMGQACSMGSLLLTAGEKDMRFILPQARVMLHQPSG--------------------- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 +V+ + + + + L Sbjct: 136 -------GMQGKVSDIER--NYTDIIKVKQRLNDIYVKHTGQDLETIERTLDRDHFMNAE 186 Query: 217 EAKKVGLIDV-VGGQEEVWQSL 237 E+ + G++D + ++E+ Sbjct: 187 ESVEFGVVDKVIASRDEIEGEA 208 >gi|148912770|ref|YP_001293349.1| Putative Clp protease [Pseudomonas phage F10] Length = 693 Score = 40.0 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 49/184 (26%), Gaps = 33/184 (17%) Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 + T + + + SPGG + G AI+ ++ + +AAS +I+ A Sbjct: 61 RDLKAMGDLTKINLHIHSPGGDVFEGTAIYNLLRNHPASVD--VYIDGLAASMASVIAMA 118 Query: 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 + I E +++ ++ ++ Sbjct: 119 GDTIYMPENAMMMVH------------------KPWGIQGGDADDMRRYAELLDKVE--- 157 Query: 178 MQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQS 236 V + D L W G EA G D + + Sbjct: 158 ---------DTLVMAYANKTGKSADDIKALLKEETWMNGREAVAAGFADQLTEPLQAAAH 208 Query: 237 LYAL 240 L + Sbjct: 209 LSSK 212 >gi|156742881|ref|YP_001433010.1| AMP-dependent synthetase and ligase [Roseiflexus castenholzii DSM 13941] gi|156234209|gb|ABU58992.1| AMP-dependent synthetase and ligase [Roseiflexus castenholzii DSM 13941] Length = 1912 Score = 40.0 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 65/227 (28%), Gaps = 30/227 (13%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGS 79 S ++ + + +A + + ++ EL ++ ++R + A++ GS Sbjct: 896 SAAAEQKALTQRIAIVTVTNPPVNALNERALDELNTIVDHLARREDVAAVV-----FTGS 950 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 I+++ + + +++ ++ Sbjct: 951 GTKSFVAGADIKQMLEEMHTV--------EDAMALPNNAHLAFRKIETMNKPCIAAINGV 1002 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 + ++ + +E + + RL+ R Sbjct: 1003 ALGGGMEFALACHYRIA--------DLHAEFGQPEINLRLLPGYGGTQRLPRLLYSRRGE 1054 Query: 200 --PYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVD 243 +++ GR A ++GLID V G EE + + Sbjct: 1055 AGLIKALMIIMGGRTLNAERAYEIGLIDKVAHGHEEALTLATQMARE 1101 >gi|258427137|ref|ZP_05688059.1| scaffolding protease [Staphylococcus aureus A9299] gi|257849915|gb|EEV73874.1| scaffolding protease [Staphylococcus aureus A9299] Length = 257 Score = 40.0 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 70/221 (31%), Gaps = 38/221 (17%) Query: 41 IAIRGQIEDSQELIERI------ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I I G I + + ++ + + V ++S GGS + G AI+ ++ Sbjct: 20 IFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHP 79 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + V +AAS +I+ + + I + S + Sbjct: 80 AKIN--IYVDALAASIASVIAMSGDTIFKPKNSFLMIHN--------------------- 116 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213 + + + + + +++N+ ++ + D W Sbjct: 117 --------SWVMTVGNAEELRKTADLLDKTDAVSNSAYLDKAKNLDQEQLKQMLDAETWL 168 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 T EA GLID V G E+ S+ + +D Sbjct: 169 TAEEALSFGLIDEVLGANEIAASISKEQYKRFENVPEDLKK 209 >gi|194761774|ref|XP_001963100.1| GF15771 [Drosophila ananassae] gi|190616797|gb|EDV32321.1| GF15771 [Drosophila ananassae] Length = 252 Score = 40.0 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 58/190 (30%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D S ++ ++ + ++ + + ++SPGG AG AI+ +Q VK Sbjct: 55 IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A + + + + + + + + + Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSG---GAQGQATDILIHAEEIIK 171 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + +M + T E Sbjct: 172 IKRQLTSIYVKHAKNSYDEMCSRMERDH--------------------------FMTPEE 205 Query: 218 AKKVGLIDVV 227 AK +G+ID V Sbjct: 206 AKTLGIIDHV 215 >gi|218439261|ref|YP_002377590.1| ATP-dependent Clp protease-like protein [Cyanothece sp. PCC 7424] gi|218171989|gb|ACK70722.1| Endopeptidase Clp [Cyanothece sp. PCC 7424] Length = 228 Score = 40.0 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 64/182 (35%), Gaps = 22/182 (12%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 I+ +Q +I ++ + DD + ++S G S Y G+AI + I + Sbjct: 53 IDVTQLIIAQLLYLQFDDPDKPIYFYINSTGTSWYTGDAIGFETEAF-AICDTINYIKPP 111 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + + ++ + + G P+ L++ + Sbjct: 112 VHTICIGQAMGTAAMILSAGT----KGCRASLPHATIVLNQNRTGAQG------------ 155 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLID 225 +Q+ V ++ + + +++ +K D + T +AK+ GLID Sbjct: 156 ----QATDIQIRAKEVLANKRTMLEIFAKNTGQTVEKLAKDLDRTFYMTPEQAKEYGLID 211 Query: 226 VV 227 V Sbjct: 212 RV 213 >gi|6723197|dbj|BAA89607.1| capsid protein [Bacteriophage WO] Length = 118 Score = 40.0 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Y FV+L++ +R + +K G + G +A ++GL D V E Sbjct: 13 YEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFINK 62 >gi|116695678|ref|YP_841254.1| enoyl-CoA hydratase/isomerase [Ralstonia eutropha H16] gi|113530177|emb|CAJ96524.1| Enoyl-CoA hydratase/isomerase [Ralstonia eutropha H16] Length = 297 Score = 40.0 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 19/176 (10%), Positives = 48/176 (27%), Gaps = 14/176 (7%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 +L+ + DD +I+ + P S AG A++ +T Sbjct: 44 DDLVAALRDAEYDDDIKVIILKGNGP--SFCAGHDYNDAVKSY---GLELTPDGGKPRRP 98 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 + + + ++ V + + Sbjct: 99 NQRTRLQRDRRLGMSYMAFQNSAKPVIAQVHGHCTGVGIYLVELVDLAIAADDACFSHAE 158 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 + ++S + V+ ++ G + G+EA ++GL++ Sbjct: 159 QRFGLAGNTWHMNSQILMYGAKVAR---------ELMLLGERFNGSEACRLGLVNR 205 >gi|295401529|ref|ZP_06811498.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus thermoglucosidasius C56-YS93] gi|312109546|ref|YP_003987862.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacillus sp. Y4.1MC1] gi|294976441|gb|EFG52050.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus thermoglucosidasius C56-YS93] gi|311214647|gb|ADP73251.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus sp. Y4.1MC1] Length = 196 Score = 40.0 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 65/196 (33%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + ++ ++ ++ +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IIILGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIYDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A S + L ++ Sbjct: 89 STICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEIAAKR------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + R++SE+ P D T Sbjct: 143 ------------------------ILFLRDKLNRILSENTGQPIDVIERDTDRDNFMTAQ 178 Query: 217 EAKKVGLIDVVGGQEE 232 +A++ G+ID V + + Sbjct: 179 KAQEYGIIDRVLTRVD 194 >gi|254468869|ref|ZP_05082275.1| ATP-dependent Clp protease, proteolytic subunit ClpP [beta proteobacterium KB13] gi|207087679|gb|EDZ64962.1| ATP-dependent Clp protease, proteolytic subunit ClpP [beta proteobacterium KB13] Length = 207 Score = 40.0 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 58/194 (29%), Gaps = 31/194 (15%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G ++D ++ ++ + ++ + + ++SPGGS AG AI+ +Q +K Sbjct: 43 VVFLVGPVDDMTANLVVAQLLFLEAENPDKDISLYINSPGGSVTAGMAIYDTMQFIKPDV 102 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A + S V L + + + K + Sbjct: 103 STLCIGQAASMGALLLTAGAKDKRFCLPNSRVMIHQPLG---GFQGQASDIEIHAKEILY 159 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 K + + + Sbjct: 160 LKDKLNRILSHHTGQDIKTIS--------------------------KDTDRDNFMSSED 193 Query: 218 AKKVGLIDVVGGQE 231 A K GL+D V + Sbjct: 194 AVKYGLVDKVINER 207 >gi|325662430|ref|ZP_08151036.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae bacterium 4_1_37FAA] gi|331086220|ref|ZP_08335302.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471264|gb|EGC74488.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae bacterium 4_1_37FAA] gi|330406379|gb|EGG85893.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae bacterium 9_1_43BFAA] Length = 193 Score = 40.0 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 51/181 (28%), Gaps = 31/181 (17%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++ ++ + +D + + ++SPGGS AG AI+ +Q +K + Sbjct: 39 VSASVIVAQLLFLEAEDPEKDIHLYINSPGGSVTAGMAIYDTMQFIKCDVSTTCIGMAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L A A + + + + + + + K Sbjct: 99 MGAFLLAGGAKGKRYALPNAEIMIHQPSG---GAQGQATDIKIVADHILKTRTKLNKIL- 154 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226 +E+ + EAK GLID Sbjct: 155 --------------------------AENTGQDLSVIEVDTERDNYMSAEEAKAYGLIDE 188 Query: 227 V 227 V Sbjct: 189 V 189 >gi|308174327|ref|YP_003921032.1| membrane bound hydrolase [Bacillus amyloliquefaciens DSM 7] gi|307607191|emb|CBI43562.1| putative membrane bound hydrolase [Bacillus amyloliquefaciens DSM 7] Length = 438 Score = 40.0 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISR 62 + +K KT + + + + + P V I + +E + R + ++ Sbjct: 1 MFRK-KTGIAVALFGLFVLSLLGVQLNAKADHPSVYVIPVEKNVEQGLASFLSRSFKDAK 59 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAI 90 + A+ +I+ +++PGG+ + I I Sbjct: 60 ESGASHIILDINTPGGAVQSALDIADII 87 >gi|121608115|ref|YP_995922.1| enoyl-CoA hydratase/isomerase [Verminephrobacter eiseniae EF01-2] gi|121552755|gb|ABM56904.1| Enoyl-CoA hydratase/isomerase [Verminephrobacter eiseniae EF01-2] Length = 269 Score = 40.0 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%) Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 L GR TG EA ++GL D + Q++V AL + + + L + Sbjct: 171 LYTGRRITGEEAVRIGLADELVAQDQVRARAQALAGEIAASAPIAVESTRASLRAGLVDA 230 Query: 267 SISS 270 ++ Sbjct: 231 VRAA 234 >gi|316936723|gb|ADU60356.1| capsid protein [Wolbachia phage WO] Length = 135 Score = 40.0 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 + +++ +Q VD Y F++L++ +R + +K G + G +A ++GL D Sbjct: 2 HMEPMTSESLGSLQKEVDRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 60 Query: 226 VVGGQEE 232 V E Sbjct: 61 GVTTFFE 67 >gi|313680083|ref|YP_004057822.1| hypothetical protein Ocepr_1192 [Oceanithermus profundus DSM 14977] gi|313152798|gb|ADR36649.1| protein of unknown function DUF107 [Oceanithermus profundus DSM 14977] Length = 426 Score = 40.0 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 57/237 (24%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLS 74 L+ +++ + + + I G I++ + + + + R R + A+ +++ + Sbjct: 6 LILSFLIFLAGWAQAAS-----YVVQIEGTIDNPLAAYVEDALVRAER-EGASGVVLWID 59 Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 +PGG A I A+ + L + A + +L+ Sbjct: 60 TPGGRVDAAMRISDAVLQTP------------------LPTLAVVKNAFSAGALIALSAE 101 Query: 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 L + + +P +E + + + R V+ Sbjct: 102 QVAMLPGSEIGAALPIVV------------TPVTEPTAADRKFISALKGK-----FRAVA 144 Query: 195 ESRNIPYDKTLVLSDGRI-------------WTGAEAKKVGLID-VVGGQEEVWQSL 237 E+R P + + D I T A+A ++G+ D + + Sbjct: 145 EARGRPVELAEAMVDPEIEVEGLAGKGEPLTLTAAKAVELGVADFEAASLRDALERA 201 >gi|118791462|ref|XP_319765.3| AGAP009019-PA [Anopheles gambiae str. PEST] gi|116117612|gb|EAA14822.3| AGAP009019-PA [Anopheles gambiae str. PEST] Length = 225 Score = 40.0 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D ++ ++ + ++ + + ++SPGGS AG AI+ +Q VK Sbjct: 53 IICLMGPIHDDLSSLIVAQLLFLQSENGTKPIHMYINSPGGSVTAGLAIYDTMQYVKPPV 112 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A + + + + Sbjct: 113 ATWCVGQACSMGSLLLAAGAPGMRHSLPNARIMIHQPSGGAQGQ---------------- 156 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 +Q+ + + + + D + + Sbjct: 157 --------------ATDIQIQAEEILKLKKQLTEIYGKHTKTSLDVLYSKMERDTFLSPE 202 Query: 217 EAKKVGLIDVV 227 EA+ +G+ID V Sbjct: 203 EAQTLGIIDTV 213 >gi|326330783|ref|ZP_08197084.1| Clp protease [Nocardioidaceae bacterium Broad-1] gi|325951313|gb|EGD43352.1| Clp protease [Nocardioidaceae bacterium Broad-1] Length = 222 Score = 39.6 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 58/180 (32%), Gaps = 31/180 (17%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 ++ + ++ +S +D + + ++SPGGS AG AI+ + + N + +AA Sbjct: 55 NANAICAQLLLLSAEDPEADIFLHINSPGGSVDAGMAIYDTMNYIPNDVATVG--MGLAA 112 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 S G + CA + Sbjct: 113 SMGQFLLCAGAKGKR-----YALPHARIMMHQPSSGMGG--------------------- 146 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227 + +++ + L+SE ++ R +T AEA GL+D V Sbjct: 147 --SASDIKIQAQQSLHIKKVLLELISEHTGQSVEQVTVDADRDRWFTAAEALDYGLVDQV 204 >gi|225858557|ref|YP_002740067.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae 70585] gi|254763802|sp|C1C691|CLPP_STRP7 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|225721123|gb|ACO16977.1| Clp protease [Streptococcus pneumoniae 70585] Length = 196 Score = 39.6 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 59/192 (30%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +EDS +I ++ + DS + + +++PGGS AG AI + +K Sbjct: 27 IIMLTGPVEDSMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + + Sbjct: 87 QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + ++++E+ +K ++ W + Sbjct: 145 --------------------------KTRNTLEKILAENSGQSMEKVHADAERDNWMSAQ 178 Query: 217 EAKKVGLIDVVG 228 E + G ID + Sbjct: 179 ETLEYGFIDEIM 190 >gi|195978714|ref|YP_002123958.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975419|gb|ACG62945.1| ATP-dependent Clp protease proteolytic subunit ClpP [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 207 Score = 39.6 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 26/197 (13%), Positives = 59/197 (29%), Gaps = 31/197 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K Sbjct: 38 IIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + + Sbjct: 98 QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + H ++++++ + ++ W + Sbjct: 156 --------------------------KTRHRLEKILAQNAGKTIKQIHKDAERDYWMSAE 189 Query: 217 EAKKVGLIDVVGGQEEV 233 E G ID + E+ Sbjct: 190 ETLAYGFIDEIMENNEL 206 >gi|169830803|ref|YP_001716785.1| hypothetical protein Daud_0619 [Candidatus Desulforudis audaxviator MP104C] gi|169637647|gb|ACA59153.1| protein of unknown function DUF107 [Candidatus Desulforudis audaxviator MP104C] Length = 443 Score = 39.6 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 71/224 (31%), Gaps = 37/224 (16%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIER-ISRD 63 + +L V + ++ + V + + G I + + ++R I+ Sbjct: 7 RNRRIFAMCVLIFVGVALLVSAVPVQGRVA-DQVVVLRVDGPIVPV--VAQYLDRGIADA 63 Query: 64 DSATAL-IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 + A+ ++ L++PGG + I + I V A Sbjct: 64 ERLGAVCVIELNTPGGLYDTTQKIVQRIMNADVPVVVFVSP-------------AGGWAG 110 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 +A T + S V P P + + ++ + Sbjct: 111 SAGTFITISAHVAAMAP------------------GSRIGAAHPVAAGGEQMSGAQEEKI 152 Query: 183 DSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLID 225 +VR ++E R +K +++ R +T +A + LID Sbjct: 153 TQDAAAWVRSIAEMRGRDAEKAELAVTESRSYTDNQALEFNLID 196 >gi|331699932|ref|YP_004336171.1| enoyl-CoA hydratase [Pseudonocardia dioxanivorans CB1190] gi|326954621|gb|AEA28318.1| Enoyl-CoA hydratase [Pseudonocardia dioxanivorans CB1190] Length = 248 Score = 39.6 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 5/33 (15%), Positives = 11/33 (33%) Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 A +GL D +G ++ + + Sbjct: 161 ADRAHALGLADRLGTVDDAIAWAEQMAELAPLT 193 >gi|294011932|ref|YP_003545392.1| ATP-dependent Clp protease protease subunit [Sphingobium japonicum UT26S] gi|292675262|dbj|BAI96780.1| ATP-dependent Clp protease protease subunit [Sphingobium japonicum UT26S] Length = 211 Score = 39.6 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 24/200 (12%), Positives = 59/200 (29%), Gaps = 33/200 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGG +G AI ++ ++ + Sbjct: 38 IIFVTGQVEDHMASLIVAQLLFLESENPKKDIWMYINSPGGVVTSGMAIHDTMKYIRPQV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + +GS + P + L + + Sbjct: 98 GTVC---------------------IGQAASMGSFLLAAGEPGKRIALSNARIMVHQPSG 136 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L + ++ + Sbjct: 137 GAQGMASDIEIQAKEILR---------IRSRLNNLYVQYTGRSLEEVERAMDRDTFLEAE 187 Query: 217 EAKKVGLIDVVGGQEEVWQS 236 EAK GL+D V + Sbjct: 188 EAKAFGLVDEVFDRRPAMAE 207 >gi|226944447|ref|YP_002799520.1| ATP-dependent Clp protease proteolytic subunit [Azotobacter vinelandii DJ] gi|226719374|gb|ACO78545.1| Peptidase S14, ClpP [Azotobacter vinelandii DJ] Length = 211 Score = 39.6 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 43 VIFMVGQVEDYMANLIVAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 102 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L A+ S + L + ++ I ++ Sbjct: 103 STICIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAREILTI-- 160 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 ++++ P D +G Sbjct: 161 ----------------------------RERLNKILAHHTGQPIDVIARDTDRDNFMSGE 192 Query: 217 EAKKVGLIDVV 227 EA K LID V Sbjct: 193 EAVKYRLIDQV 203 >gi|284034788|ref|YP_003384719.1| endopeptidase Clp [Kribbella flavida DSM 17836] gi|283814081|gb|ADB35920.1| Endopeptidase Clp [Kribbella flavida DSM 17836] Length = 192 Score = 39.6 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 50/175 (28%), Gaps = 32/175 (18%) Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + D A + + ++SPGGS AG AI+ + + N + L A Sbjct: 47 AEDPKAD-ISLYINSPGGSVSAGLAIYDTMNFISNDVATYAMGLVASMGQVLLTCGAPGK 105 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 + + + ++ + Sbjct: 106 RYSLPHARIMMHQPTGGMGG------------------------------TASDIKTQAE 135 Query: 181 VVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 + +L+S+ P +K R +T +A + G++D + Q Sbjct: 136 QSLLAKKDLAKLLSKRTGQPEEKVTEDFDRDRWFTPDQAVEYGIVDRILTQPVAV 190 >gi|257439814|ref|ZP_05615569.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Faecalibacterium prausnitzii A2-165] gi|257197723|gb|EEU96007.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Faecalibacterium prausnitzii A2-165] Length = 198 Score = 39.6 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 53/181 (29%), Gaps = 26/181 (14%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++ ++ + D + + ++SPGGS AG AI +Q +K I + Sbjct: 39 TSASLVVAQLLYLEGQDPDKDISLYINSPGGSISAGMAIHDTMQYIKCDVSTICMGMAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L A S + L + I Sbjct: 99 MGAFLLAGGTKGKRFALPNSEILIHQPLIGGQGGGLSGQTTDIKIH-------------- 144 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226 + + ++SE P +K T EAK+ GLID Sbjct: 145 -----------AEHMVYIRDKMNHMLSEYTGQPLEKIQLDTERDNYMTALEAKEYGLIDE 193 Query: 227 V 227 V Sbjct: 194 V 194 >gi|91205226|ref|YP_537581.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii RML369-C] gi|157827437|ref|YP_001496501.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii OSU 85-389] gi|91068770|gb|ABE04492.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii RML369-C] gi|157802741|gb|ABV79464.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii OSU 85-389] Length = 264 Score = 39.6 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 30/204 (14%), Positives = 61/204 (29%), Gaps = 34/204 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IED + + ++ + ++ + + ++SPGG AG AI+ +Q +K + Sbjct: 88 IIFVCGPIEDHMANLITAQLLFLEAENPEKDIYMYINSPGGVVTAGLAIYDTMQYIKPKV 147 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + S V Y ++ +K Sbjct: 148 ATLCIGQACSMGSFLLCGGEKGMRYSLPHSRVMIHQPSGGYRGQATDIEIHAQETLKIK- 206 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 L S+ + + Sbjct: 207 -----------------------------KILNSLYSKHTGQDVKHVEKSMERDNFMSPE 237 Query: 217 EAKKVGLIDVVGGQEEVWQSLYAL 240 EAKK G+ID + + + L Sbjct: 238 EAKKFGIIDKIITHRD-IKLLKDK 260 >gi|251794211|ref|YP_003008942.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus sp. JDR-2] gi|247541837|gb|ACS98855.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus sp. JDR-2] Length = 195 Score = 39.6 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 57/176 (32%), Gaps = 32/176 (18%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 + + + + D + + ++SPGGS AG AI+ +Q +K I + A Sbjct: 47 IAQMLFLAAEDPE-KDISLYINSPGGSITAGMAIYDTMQYIKPDVSTICVGMAASMGAFL 105 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A A S V L + + + + + K Sbjct: 106 LTAGAIGKRYALPNSEVMIHQPLG---GAEGQASDIEIRARRIIKMRDKLNGIL------ 156 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 +E P ++ +D + + EA++ GL+D V Sbjct: 157 ---------------------AERSGQPLERIEKDTDRDYFMSAEEARQYGLVDKV 191 >gi|153810555|ref|ZP_01963223.1| hypothetical protein RUMOBE_00936 [Ruminococcus obeum ATCC 29174] gi|149833734|gb|EDM88815.1| hypothetical protein RUMOBE_00936 [Ruminococcus obeum ATCC 29174] Length = 223 Score = 39.6 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 58/208 (27%), Gaps = 53/208 (25%) Query: 41 IAIRGQIEDSQE----------------LIERIERISRDDSATALIVSLSSPGGSAYAGE 84 I I+G I + + + + + + D+ L+ +S GGS AG+ Sbjct: 4 INIKGDIISNDDKWIYDWFEMDATCPRDVTDILNSAAVDEEIEVLV---NSGGGSVMAGQ 60 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I+ A++ +K + + A + + + + +++ V Sbjct: 61 EIYSALK----QKKNVVIKIQSMAGSAAGVIAMAGKCQMSPVAMIMIHNVSMSGASGDYH 116 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 +S R D+ Sbjct: 117 ---------------------------DMQKNAEILKQMNSALAAAYTEKSGR--SLDEI 147 Query: 205 LVLSDGRIW-TGAEAKKVGLIDVVGGQE 231 L L D W T + G +D + ++ Sbjct: 148 LKLMDRETWLTANQCLDYGFVDEIMSEQ 175 >gi|75907528|ref|YP_321824.1| ATP-dependent Clp protease proteolytic subunit [Anabaena variabilis ATCC 29413] gi|115311345|sp|Q3MDK7|CLPP2_ANAVT RecName: Full=ATP-dependent Clp protease proteolytic subunit 2; AltName: Full=Endopeptidase Clp 2 gi|75701253|gb|ABA20929.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena variabilis ATCC 29413] Length = 197 Score = 39.6 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 62/187 (33%), Gaps = 33/187 (17%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 + +I + ++I + + +D + + ++SPGG +G AI+ +Q +K+ I Sbjct: 38 DVDDEIAN--QIIAVMLYLDSEDPGKDIYLYINSPGGMVTSGLAIYDTMQHIKSDVVTIC 95 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + + L + +A S + ++ I ++ Sbjct: 96 VGLAASMGSFLLAAGTKGKRLALPHSRIMIHQPSGGTRGQATDIEIEAREILRIRH---- 151 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220 ++ + + N P K D + + EAK+ Sbjct: 152 --------------------------QLNQIYANNTNQPLAKIEKDMDRDFFMSAQEAKE 185 Query: 221 VGLIDVV 227 GLID V Sbjct: 186 YGLIDRV 192 >gi|58696873|ref|ZP_00372388.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia endosymbiont of Drosophila simulans] gi|58699505|ref|ZP_00374232.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia endosymbiont of Drosophila ananassae] gi|225630255|ref|YP_002727046.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia sp. wRi] gi|254763810|sp|C0R2W3|CLPP_WOLWR RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|58533978|gb|EAL58250.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia endosymbiont of Drosophila ananassae] gi|58536916|gb|EAL60096.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia endosymbiont of Drosophila simulans] gi|225592236|gb|ACN95255.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia sp. wRi] Length = 208 Score = 39.6 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IED+ ++ ++ + ++ + + ++SPGG AG +I+ +Q + Sbjct: 29 IIFVTGPIEDNMASVIVAQLLFLESENPDKDICMYINSPGGVVTAGLSIYDTMQYINPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + S + Y ++ I V Sbjct: 89 STLCIGQAASMGSLLLAAGTKGKRYSLPHSRIMIHQPSGGYHGQATDIEIHANEILRV-- 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216 ++ + K + + + Sbjct: 147 ----------------------------KKKLNQIYEKHTGNSLKKIEGMMERDKFMDPE 178 Query: 217 EAKKVGLIDVV 227 EA+K+GLID V Sbjct: 179 EARKIGLIDRV 189 >gi|217967475|ref|YP_002352981.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus turgidum DSM 6724] gi|217336574|gb|ACK42367.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus turgidum DSM 6724] Length = 194 Score = 39.6 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 58/176 (32%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGG AG AI+ I+ +K + + + +A Sbjct: 43 IVAQLLFLESEDPEKDIYLYINSPGGEVSAGLAIYDTIRHIKPKVATVCVGQAASMAAIL 102 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A S V L ++ I + Sbjct: 103 LAAGDKGKRYALPHSRVMIHQPLGGAYGPAADIEIHTREILKI----------------- 145 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 +++ P +K +D + + EAK+ G++D V Sbjct: 146 -------------KRVLNEILAYHTGQPIEKIEKDTDRDFFMSAYEAKEYGIVDEV 188 >gi|298290031|ref|YP_003691970.1| peptidase S14 ClpP [Starkeya novella DSM 506] gi|296926542|gb|ADH87351.1| peptidase S14 ClpP [Starkeya novella DSM 506] Length = 293 Score = 39.6 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 15/185 (8%), Positives = 53/185 (28%), Gaps = 4/185 (2%) Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 ++ G + + ++ + +R + + + ++ Sbjct: 59 VIGEDYWSGGGVTAKKVASQLKAIGDRPVEVQINSPGGDMFEGIAIFNVLREHPQDITVK 118 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 + D + + S + N ++ + ++ Sbjct: 119 VMGMAASAASIIAMAGDHVEMGAASFLM---IHNCWVLAIGNRHDMRETAEWLEPFDQAM 175 Query: 190 VRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 V L + + D + +G++A + G D + +++ A D++I + Sbjct: 176 VDLYAARTSQKPADIAKWMDAETYMSGSQAVERGFADALLASDQITTDEKAQSADRNINE 235 Query: 249 IKDWN 253 ++ Sbjct: 236 LRAME 240 >gi|332372582|gb|AEE61433.1| unknown [Dendroctonus ponderosae] Length = 244 Score = 39.6 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 63/194 (32%), Gaps = 33/194 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D+ ++ ++ + +++ + + ++SPGGS AG I+ +Q Sbjct: 55 IICLMGPIHDTMSSLIVAQLLFLQAENTNKPIHMYINSPGGSVTAGLGIYDTMQ------ 108 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 A+ +C+ ++ A S P ++ L + I Sbjct: 109 ----YCAPPIATWCVGQACSMASLLLASGS-----------PGMRHSLPNARIMIHQPSG 153 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + +L + + + + + Sbjct: 154 GAQGQATDIQIQAEEIIK---------LKNQINQLYVRHTGLELETIEKNMERDKFMSPV 204 Query: 217 EAKKVGLIDVVGGQ 230 EAK+ GLID V + Sbjct: 205 EAKEFGLIDTVLTR 218 >gi|269203617|ref|YP_003282886.1| phage Clp protease [Staphylococcus aureus subsp. aureus ED98] gi|262075907|gb|ACY11880.1| phage Clp protease [Staphylococcus aureus subsp. aureus ED98] Length = 257 Score = 39.6 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 38/221 (17%) Query: 41 IAIRGQIEDSQELIERI------ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I I G I + + ++ + + V ++S GGS + G AI+ ++ Sbjct: 20 IFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHP 79 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + V +AAS +I+ + + I + S + Sbjct: 80 AKIN--IYVDALAASIASVIAMSGDAIFMHKNSFLMIHN--------------------- 116 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213 + + + + + +++++ + + D W Sbjct: 117 --------SWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWL 168 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 T EA GLID + G E+ S+ + +D Sbjct: 169 TAEEALSFGLIDEILGANEIAASISKEQYKRFENVPEDLKK 209 >gi|225573279|ref|ZP_03782034.1| hypothetical protein RUMHYD_01470 [Blautia hydrogenotrophica DSM 10507] gi|225039411|gb|EEG49657.1| hypothetical protein RUMHYD_01470 [Blautia hydrogenotrophica DSM 10507] Length = 223 Score = 39.6 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 19/192 (9%), Positives = 64/192 (33%), Gaps = 7/192 (3%) Query: 43 IRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 + G I + ++ ++ + + + V ++SPGG A I+ + + Sbjct: 1 MNGTIAEESWFDDDVTPQLFKEELMAGSGDITVWINSPGGDCVAAAQIYNMLMDYPHNVT 60 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL--FQYPYVKPFLDKLGVSIKSVK 156 V + +A++ ++ ++ ++ + + ++ ++ LG S+ Sbjct: 61 VKIDGIAASAASVIAMAGTRVLVSPVSMMMIHNPMTVAMGDTAEMQKAIEMLGSVKDSII 120 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216 ++ ++++ + SR + + +++ Sbjct: 121 NAYEIKTGLSRAKLSHLMDAETWMDAGKAVELGFADGVLSRAEIPEDIEPPAVSMLYS-K 179 Query: 217 EAKKVGLIDVVG 228 A L+D + Sbjct: 180 AAVVNSLMDKIA 191 >gi|254242214|ref|ZP_04935536.1| hypothetical protein PA2G_02948 [Pseudomonas aeruginosa 2192] gi|126195592|gb|EAZ59655.1| hypothetical protein PA2G_02948 [Pseudomonas aeruginosa 2192] Length = 696 Score = 39.6 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 76/279 (27%), Gaps = 59/279 (21%) Query: 38 VARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 VA I + +I +Q+ ++ + + + + + SPGG + G AI+ ++ Sbjct: 42 VAEILLYDEIGAWGITAQQFARELKALGD---LSLISLRVHSPGGDVFEGTAIYNLLKHH 98 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 R V +AAS ++ + ++I E +++ Sbjct: 99 PARVE--GYVDGLAASMATVVLMSCDVIHIPENAMMMVH------------------RPW 138 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 ++ + V + L W Sbjct: 139 GIQGGEADDMRRYADLLEKIE------------GTMVAAYMAKTGKSEEDIKALLKAETW 186 Query: 214 T-GAEAKKVGLIDVV------------------GGQEEVWQSLYALGVDQSIRKIKDWNP 254 G EA + G D + E ++L + Sbjct: 187 MDGREAVEAGFADQLTEPLAAAAQLTSKRMKEFAHMPEALKALMQ-PRASTPAAAAPTPS 245 Query: 255 PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 P + + I + T+ +G+ AV+ P Sbjct: 246 PAAPTSQPAPAAPDEAAVRAQINAAENTRREGIRAVFQP 284 >gi|148241165|ref|YP_001226322.1| protease subunit of ATP-dependent Clp protease [Synechococcus sp. RCC307] gi|147849475|emb|CAK26969.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp. RCC307] Length = 207 Score = 39.6 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 54/186 (29%), Gaps = 33/186 (17%) Query: 43 IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102 I I D+ ++ ++ + +D + + ++SPGGS AG AI+ +Q+V I Sbjct: 51 IDDAIADA--VVAQLLYLEAEDPEKEIQIYVNSPGGSVTAGLAIYDTMQQVAPDVVTICY 108 Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 + A L +A + + L ++ Sbjct: 109 GLAASMGAFLLSGGTKGKRLALPNARIMIHQPLGGAQGQAVDIE---------------- 152 Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKV 221 + + L++ K + EA Sbjct: 153 --------------IQAKEILYLKETLNGLMASHTGQDLAKVSEDTDRDYFLSPDEAVAY 198 Query: 222 GLIDVV 227 GLID V Sbjct: 199 GLIDRV 204 >gi|160936367|ref|ZP_02083736.1| hypothetical protein CLOBOL_01259 [Clostridium bolteae ATCC BAA-613] gi|158440650|gb|EDP18388.1| hypothetical protein CLOBOL_01259 [Clostridium bolteae ATCC BAA-613] Length = 193 Score = 39.6 bits (90), Expect = 0.54, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 56/181 (30%), Gaps = 31/181 (17%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++ ++ + +D + + ++SPGGS AG AI+ + +K I + Sbjct: 39 VSASLVVAQLLFLESEDPGKDIHLYINSPGGSVSAGFAIYDTMNYIKCDVSTICIGMAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L A A + + K ++ + +++ + K Sbjct: 99 MGAFLLSGGAKGKRFALPNAEIMIHQPSG---GAKGQATEIKIVAENILKTRKKLNEIL- 154 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226 + + P + + EAK+ GLID Sbjct: 155 --------------------------AANTGKPLEVIERDTERDNYMSALEAKEYGLIDE 188 Query: 227 V 227 + Sbjct: 189 I 189 >gi|87301613|ref|ZP_01084453.1| Clp protease proteolytic subunit [Synechococcus sp. WH 5701] gi|87283830|gb|EAQ75784.1| Clp protease proteolytic subunit [Synechococcus sp. WH 5701] Length = 213 Score = 39.6 bits (90), Expect = 0.54, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 57/181 (31%), Gaps = 31/181 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + L+ ++ + +D + + ++SPGGS AG AI+ +Q+V I + Sbjct: 58 ADSLVAQLLFLEAEDPEKDIQIYVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMG 117 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L +A ++ + L ++ Sbjct: 118 AFLLSGGTKGKRMALPSARIMIHQPLGGAQGQAVDIE----------------------- 154 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228 + + L++E P K +D + + EA GLID V Sbjct: 155 -------IQAKEILFLKDTLNGLMAEHTGQPLAKIAEDTDRDYFLSPPEAVSYGLIDRVV 207 Query: 229 G 229 Sbjct: 208 D 208 >gi|119356977|ref|YP_911621.1| nodulation efficiency protein NfeD [Chlorobium phaeobacteroides DSM 266] gi|119354326|gb|ABL65197.1| Nodulation efficiency protein NfeD [Chlorobium phaeobacteroides DSM 266] Length = 445 Score = 39.6 bits (90), Expect = 0.54, Method: Composition-based stats. Identities = 35/240 (14%), Positives = 70/240 (29%), Gaps = 33/240 (13%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERISR 62 ++ + V + + SS + V+RI ++G + + R Sbjct: 7 IRWSRVFAVRFFFIAVVSAIALISSPADGAENLVSRIVLKGSVNPGSAGFFSRALHDARR 66 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 S A++V L +PGG + ++ + I V A++ + S + Sbjct: 67 SGS-DAVLVELDTPGGLVSSLRSMVQEIMASPIPVIVYVYPSGAQAASAGALLMLSAHVA 125 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A A P + M + VV Sbjct: 126 AMAPGTEI-----------------------------GAAHPVGAGGKSDGDETMKKKVV 156 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG-QEEVWQSLYALG 241 + + L + +++ T EA + G+ID++ EV L + Sbjct: 157 NDLAAFARSLAEKRGRNAQWAEKAVTESVSSTAQEALQAGVIDMISDNPSEVLSRLRGMK 216 >gi|237717659|ref|ZP_04548140.1| clp protease [Bacteroides sp. 2_2_4] gi|229453061|gb|EEO58852.1| clp protease [Bacteroides sp. 2_2_4] Length = 350 Score = 39.6 bits (90), Expect = 0.54, Method: Composition-based stats. Identities = 26/201 (12%), Positives = 64/201 (31%), Gaps = 42/201 (20%) Query: 39 ARIAIRGQIEDSQ-----ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 A I + G+I + ++ + + V ++S GG + G AIF A ++ Sbjct: 26 ACILLYGEIGEYDRVRSGDIARELIEAESASR--QIDVRINSIGGDIFTGMAIFNAFRQS 83 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + + +AAS G +I+ + + + + +++ Sbjct: 84 AAD--ITIYIDGVAASMGSVIAACGKPVKMSRYARLMVHSPSGGAYGNAGEMEE------ 135 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGR- 211 ++ S + + ++ DG+ Sbjct: 136 ------------------------TAGMLKSLEDTLCEIYAARCKKTKEEIRSEWFDGKD 171 Query: 212 -IWTGAEAKKVGLIDVVGGQE 231 +T +A ++GL+D + + Sbjct: 172 HWFTARQAVELGLVDEIYDAD 192 >gi|242819717|ref|XP_002487374.1| enoyl-CoA hydratase/isomerase family protein [Talaromyces stipitatus ATCC 10500] gi|218713839|gb|EED13263.1| enoyl-CoA hydratase/isomerase family protein [Talaromyces stipitatus ATCC 10500] Length = 269 Score = 39.6 bits (90), Expect = 0.54, Method: Composition-based stats. Identities = 11/79 (13%), Positives = 31/79 (39%) Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 + +G+ +T EA + ++D +G + Q + G+ + + W + ++ Sbjct: 174 IIEGKRYTAQEALQAKIVDGLGDLTDAVQLVLDRGLLKIASSPAFVAMKERLWADVVDSI 233 Query: 267 SISSLLEDTIPLMKQTKVQ 285 + ++ L + V Sbjct: 234 DSLAAHDEADELKAKRTVD 252 >gi|326790230|ref|YP_004308051.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium lentocellum DSM 5427] gi|326540994|gb|ADZ82853.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium lentocellum DSM 5427] Length = 193 Score = 39.6 bits (90), Expect = 0.54, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 50/178 (28%), Gaps = 29/178 (16%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D ++ ++SPGGS G AI+ +Q +K I + A Sbjct: 44 IVAQLLFLEAEDPDKDIMFYINSPGGSITDGMAIYDTMQYIKCDVSTICMGMAASMGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L A + V L D + +K+ P Sbjct: 104 LAGGTKGKRFALPNAEVMIHQPLGGAKGQAT--DIQITAQHIIKTKERMNRMLSEFTGQP 161 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 D+ T EAK+ GLID + Sbjct: 162 IERINNDVERDNWK---------------------------TAEEAKEYGLIDDIITS 192 >gi|257784419|ref|YP_003179636.1| Endopeptidase Clp [Atopobium parvulum DSM 20469] gi|257472926|gb|ACV51045.1| Endopeptidase Clp [Atopobium parvulum DSM 20469] Length = 202 Score = 39.6 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 50/180 (27%), Gaps = 31/180 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 +I ++ + D + + + SPGG YAG I + +K I + SA Sbjct: 50 VIAQLLHLESQDPDKDISLYIDSPGGDVYAGLGILDTMNFIKPDVSTICVGMAASMSAVL 109 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A +A S+V + + + K + Sbjct: 110 LAAGAKGKRLALPNSMVMIHQPSSGVQGQQTDIQIVADETKWI----------------- 152 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231 L+S+ +K EA GL+D V Sbjct: 153 -------------REHINELLSDYTGQSIEKVNVDTERDNYLRAQEACDYGLVDRVISSR 199 >gi|146284202|ref|YP_001174355.1| hypothetical protein PST_3890 [Pseudomonas stutzeri A1501] gi|145572407|gb|ABP81513.1| membrane protein, putative [Pseudomonas stutzeri A1501] Length = 458 Score = 39.6 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 65/219 (29%), Gaps = 26/219 (11%) Query: 30 HVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + V + + G I + ++ ++ D+ A +++ L +PGG + AI Sbjct: 19 QSASAADPVTLLRVDGAIGPASADYILRGLQHAR-DEGAQLVVLELDTPGGLDTSMRAII 77 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 +AI +A T ++ + V P Sbjct: 78 KAILASPIPVATYVTPS-------------GARAASAGTYMLYASHVAAMAPGTNLGAA- 123 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV---SESRNIPYD-K 203 + + P P E A + + + ++ R + Sbjct: 124 ---TPVQIGGMPGAPPEQPKGEREDDAKASGDALARKQVNDAAAYIRGLAQLRERNAEWA 180 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + + + +EA K+ +ID + +V L L Sbjct: 181 EQAVREAVSLSASEALKLKVIDYLA--RDVADLLRQLDG 217 >gi|322515314|ref|ZP_08068311.1| ATP-dependent Clp protease, protease subunit [Actinobacillus ureae ATCC 25976] gi|322118690|gb|EFX90902.1| ATP-dependent Clp protease, protease subunit [Actinobacillus ureae ATCC 25976] Length = 217 Score = 39.6 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 73/234 (31%), Gaps = 33/234 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIE 58 + F ++ K + + + + S+ + + I + G++ED + ++ ++ Sbjct: 13 LRFRIRNPKMAVIPMVVEQTSKGERSYDIYSRLLKERI--IFLNGEVEDHMANLIVAQLL 70 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 + +D + + ++SPGG AG AI+ + +K + + A L A Sbjct: 71 FLESEDPEKDIYLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGAK 130 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 A + V L + ++ K +M+ Sbjct: 131 GKRFALPHARVMIHQPLGGARG-------------------QATDIQIQAQEILKLKEML 171 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 + V+ + EA + GLID V + Sbjct: 172 TKRMAGHSGQPFEKVAA----------DTERDNFMSAFEAAEYGLIDKVLTHRD 215 >gi|148267495|ref|YP_001246438.1| peptidase S14, ClpP [Staphylococcus aureus subsp. aureus JH9] gi|150393549|ref|YP_001316224.1| peptidase S14 ClpP [Staphylococcus aureus subsp. aureus JH1] gi|282927349|ref|ZP_06334967.1| peptidase S14, ClpP [Staphylococcus aureus A10102] gi|147740564|gb|ABQ48862.1| peptidase S14, ClpP [Staphylococcus aureus subsp. aureus JH9] gi|149946001|gb|ABR51937.1| peptidase S14 ClpP [Staphylococcus aureus subsp. aureus JH1] gi|282590673|gb|EFB95749.1| peptidase S14, ClpP [Staphylococcus aureus A10102] Length = 257 Score = 39.6 bits (90), Expect = 0.56, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 38/221 (17%) Query: 41 IAIRGQIEDSQELIERI------ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I I G I + + ++ + + V ++S GGS + G AI+ ++ Sbjct: 20 IFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHP 79 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + V +AAS +I+ + + I + S + Sbjct: 80 AKIN--IYVDALAASIASVIAMSGDTIFMHKNSFLMIHN--------------------- 116 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213 + + + + + +++++ + + D W Sbjct: 117 --------SWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWL 168 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 T EA GLID + G E+ S+ + +D Sbjct: 169 TAEEALSFGLIDEILGANEITASISKEQYKRFENVPEDLKK 209 >gi|218245804|ref|YP_002371175.1| ATP-dependent Clp protease-like protein [Cyanothece sp. PCC 8801] gi|257058850|ref|YP_003136738.1| ATP-dependent Clp protease-like protein [Cyanothece sp. PCC 8802] gi|16506759|gb|AAL23932.1|AF423176_1 hypothetical protein [Cyanothece sp. PCC 8801] gi|218166282|gb|ACK65019.1| Endopeptidase Clp [Cyanothece sp. PCC 8801] gi|256589016|gb|ACU99902.1| Endopeptidase Clp [Cyanothece sp. PCC 8802] Length = 226 Score = 39.6 bits (90), Expect = 0.56, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 73/212 (34%), Gaps = 33/212 (15%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSP 76 ++ L + FS + I+ +Q +I ++ + DD + ++S Sbjct: 32 IIYLGMPLFSSDDVKQQVG-----------IDVTQLIIAQLLYLQFDDPDKPIYFYINST 80 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 G S Y G+AI + I + + I + AA G+ G Sbjct: 81 GTSWYTGDAIGFETEAFA-----ICDTMNYVKPPIHTICIGQAMGTAAMILSAGTKGCRA 135 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 P+ L++ + +Q+ V S+ + + S++ Sbjct: 136 SLPHATIVLNQNRSGARG----------------QATDIQIRAKEVLSNKQTMLEIFSKN 179 Query: 197 RNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 P +K +D + T +AK+ GLID V Sbjct: 180 TGQPVEKIAKDTDRTFYLTPQQAKEYGLIDRV 211 >gi|257468340|ref|ZP_05632434.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium ulcerans ATCC 49185] gi|317062614|ref|ZP_07927099.1| endopeptidase Clp [Fusobacterium ulcerans ATCC 49185] gi|313688290|gb|EFS25125.1| endopeptidase Clp [Fusobacterium ulcerans ATCC 49185] Length = 191 Score = 39.6 bits (90), Expect = 0.57, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + +I+D + ++ ++ + +D +I+ ++SPGG AG AI+ + +K Sbjct: 28 IIFLGTEIDDNVANAIVAQLLFLEAEDPDKDIIMYINSPGGVVTAGMAIYDTMNYIKPDV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A A E S + L ++ Sbjct: 88 QTVCIGQAASMGALLLGAGAKGKRYALEHSRIMIHQPLGGARGQATDIE----------- 136 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + +++++ + + Sbjct: 137 -------------------IQAKEILRMKEMLSQIMADCTGKSLSEILNDTERDNYMSAE 177 Query: 217 EAKKVGLIDVV 227 EAK GLID V Sbjct: 178 EAKNYGLIDQV 188 >gi|15618431|ref|NP_224716.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila pneumoniae CWL029] gi|15836051|ref|NP_300575.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila pneumoniae J138] gi|16752522|ref|NP_444784.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila pneumoniae AR39] gi|33241872|ref|NP_876813.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila pneumoniae TW-183] gi|6831515|sp|Q9Z832|CLPP1_CHLPN RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; AltName: Full=Endopeptidase Clp 1 gi|4376809|gb|AAD18660.1| CLP Protease [Chlamydophila pneumoniae CWL029] gi|7189161|gb|AAF38099.1| ATP-dependent Clp protease, proteolytic subunit [Chlamydophila pneumoniae AR39] gi|8978891|dbj|BAA98726.1| CLP protease [Chlamydophila pneumoniae J138] gi|33236381|gb|AAP98470.1| endopeptidase [Chlamydophila pneumoniae TW-183] gi|269303395|gb|ACZ33495.1| Clp protease [Chlamydophila pneumoniae LPCoLN] Length = 191 Score = 39.6 bits (90), Expect = 0.57, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 59/180 (32%), Gaps = 29/180 (16%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + + I+++ + D ++ ++SPGGS AG A++ I+ + + + + Sbjct: 33 SASDAIKKLWYLELKDPGKPIVFVINSPGGSVDAGFAVWDQIKMLTSPVTTVVTGLAASM 92 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 + + A A S + P D + + + Sbjct: 93 GSVLSLCAAPGRRFATPHSRIMIHQPSIGGPITGQATDLDIHAREIL------------- 139 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 + + + E+ N P D D +W T EAK GL+D + Sbjct: 140 ---------------KTKARIIDVYVEATNQPRDIIEKAIDRDMWMTANEAKDFGLLDGI 184 >gi|87124411|ref|ZP_01080260.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. RS9917] gi|86167983|gb|EAQ69241.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. RS9917] Length = 196 Score = 39.6 bits (90), Expect = 0.57, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 61/184 (33%), Gaps = 31/184 (16%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + ++ ++ + +D + + ++SPGGS Y G IF +Q +K + + Sbjct: 38 SANRIVAQLLFLEAEDPDKDIYLYINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASM 97 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 A L + A + + S + L + + + + K Sbjct: 98 GAFLLCAGAKGKRSSLQHSRIMIHQPLG---GARGQASDIRIQADEILFLKDK------- 147 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 R ++E P +K V +D + + +A GLID V Sbjct: 148 --------------------LNRELAERSGQPLEKIQVDTDRDFFMSPQDAVSYGLIDSV 187 Query: 228 GGQE 231 + Sbjct: 188 IDRR 191 >gi|325914991|ref|ZP_08177323.1| protease subunit of ATP-dependent protease [Xanthomonas vesicatoria ATCC 35937] gi|325538884|gb|EGD10548.1| protease subunit of ATP-dependent protease [Xanthomonas vesicatoria ATCC 35937] Length = 233 Score = 39.6 bits (90), Expect = 0.57, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 71/194 (36%), Gaps = 38/194 (19%) Query: 36 PHVARIAIRGQIEDS--QELIERIERISRDDSATA--LIVSLSSPGGSAYAGEAIFRAIQ 91 VA + I G I DS E + +E + + TA + V ++S GG G AI+ A+ Sbjct: 24 NDVAEVMIYGTIGDSLWSESVSALELAEQINQITASTIHVRINSGGGVVADGIAIYNALS 83 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + K + V AAS LI+ A N +V +SL+ Sbjct: 84 QHAAHK--VVFVDGQAASIASLIAMAGNEVVMYASSLLMVHA------------------ 123 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 ++ + + + ++ A + + + +L+DG Sbjct: 124 PHTIAAGNASSFRQYATALDAHA------------GAMLEAYATKTGKRSEVEQLLTDGA 171 Query: 212 --IWTGAEAKKVGL 223 +TGA+A + G Sbjct: 172 DHWYTGAQAVEFGF 185 >gi|253999170|ref|YP_003051233.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylovorus sp. SIP3-4] gi|313201272|ref|YP_004039930.1| ATP-dependent clp protease, proteolytic subunit clpp [Methylovorus sp. MP688] gi|253985849|gb|ACT50706.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylovorus sp. SIP3-4] gi|312440588|gb|ADQ84694.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylovorus sp. MP688] Length = 208 Score = 39.6 bits (90), Expect = 0.57, Method: Composition-based stats. Identities = 25/198 (12%), Positives = 59/198 (29%), Gaps = 34/198 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + ++SPGGS AG AI+ +Q +K Sbjct: 40 VIFLVGPVNDMTANLVVAQLLFLEAENPDKDISLYINSPGGSVTAGMAIYDTMQFIKPDV 99 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A + S V L + ++ Sbjct: 100 STLCIGQAASMGALLLTAGAKDKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKE------ 153 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + +++ P D + Sbjct: 154 ------------------------ILYLREKLNLILASHTGQPVDVIERDTDRDNFMSAQ 189 Query: 217 EAKKVGLIDV-VGGQEEV 233 ++ GL+D + + + Sbjct: 190 QSVNYGLVDKVIASRTDA 207 >gi|256829383|ref|YP_003158111.1| Nodulation efficiency protein NfeD [Desulfomicrobium baculatum DSM 4028] gi|256578559|gb|ACU89695.1| Nodulation efficiency protein NfeD [Desulfomicrobium baculatum DSM 4028] Length = 489 Score = 39.6 bits (90), Expect = 0.57, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 71/216 (32%), Gaps = 14/216 (6%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGG-SAYA 82 + D + + I + ++ I R + + A +++ L++PGG A Sbjct: 27 FVFAQEADTGRRGYVLTVDDAIGPATRDHIVRNITRAEK-EGAEVVVLRLNTPGGLDASM 85 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQ----- 137 + I + + + AASAG I AS+I A + +GS + Sbjct: 86 RDIIRKILASEVPVVTWVAPAGSRAASAGTYIMYASHIAAMAPATNLGSATPVQIGGGES 145 Query: 138 --YPYVKPFLDKLGVSIKSVKSSPMKAEPS---PFSEVNPKAVQMMQDVVDSSYHWFVRL 192 P + ++ E P N M + VV+ + + L Sbjct: 146 DKSPSSWERAREAMEKMRDGDEGANATEQPENLPEEPENLPDDAMGRKVVNDAVAYIKGL 205 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 + + T +EA + ++DVV Sbjct: 206 AERHARNAEWAERAVREAVSLTASEALEQRVVDVVA 241 >gi|66395603|ref|YP_239937.1| ORF015 [Staphylococcus phage 3A] gi|62635949|gb|AAX91060.1| ORF015 [Staphylococcus phage 3A] Length = 257 Score = 39.6 bits (90), Expect = 0.57, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 38/221 (17%) Query: 41 IAIRGQIEDSQELIERI------ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 I I G I + + ++ + + V ++S GGS + G AI+ ++ Sbjct: 20 IFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHP 79 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + V +AAS +I+ + + I + S + Sbjct: 80 AKIN--IYVDALAASIASVIAMSGDTIFMHKNSFLMIHN--------------------- 116 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW- 213 + + + + + +++++ + + D W Sbjct: 117 --------SWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWL 168 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 T EA GLID + G E+ S+ + +D Sbjct: 169 TAEEALSFGLIDEILGANEITASISKEQYKRFENVPEDLKK 209 >gi|291614263|ref|YP_003524420.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sideroxydans lithotrophicus ES-1] gi|291584375|gb|ADE12033.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sideroxydans lithotrophicus ES-1] Length = 208 Score = 39.6 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 62/193 (32%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G++ D ++ ++ + ++ + ++SPGGS AG AI+ +Q +K + Sbjct: 43 VVFLVGEVNDHTANLIVAQMLFLESENPDKDIHFYINSPGGSISAGMAIYDTMQFIKPQV 102 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A A S V L + ++ Sbjct: 103 STLCIGMAASMGAFLLQAGAKGKRFALPNSTVMIHQPLGGFRGQASDIE----------- 151 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + S L+++ ++ + Sbjct: 152 -------------------IHARYILSLRERLYALMAQHTGRTVEEIARDSERDNFLSAK 192 Query: 217 EAKKVGLIDVVGG 229 EA + GL+D V Sbjct: 193 EAVEYGLVDQVLD 205 >gi|254503279|ref|ZP_05115430.1| 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family [Labrenzia alexandrii DFL-11] gi|222439350|gb|EEE46029.1| 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family [Labrenzia alexandrii DFL-11] Length = 696 Score = 39.6 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 33/264 (12%), Positives = 72/264 (27%), Gaps = 47/264 (17%) Query: 35 SPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 ++A I I ++ L + I+ +D+ A++V A Sbjct: 11 EDNIAVIEIANPPVNALSHAVRSGLQDAFRGIAENDAIKAIVVY------GAGRTFVAGA 64 Query: 89 AIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 I++ + K + AS L ++G ++ K L Sbjct: 65 DIREFGQPPKEPFLPELINEIESCTRPVIASVHGTVLGGGLELALGAHYRIAAPKTKLGL 124 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 VS+ + + V ++ Sbjct: 125 PEVSLGLLPGAGGTQRLPRLVPVT------------------------------KAIDMI 154 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQEEV----WQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 + G+ + EA ++GLID + G++++ AL + + P Sbjct: 155 TSGKPVSANEALELGLIDQISGEDDMRAAGLAYAKALVKQGAGPRPVSGLPCNTPEDGLF 214 Query: 264 KNLSISSLLEDTIPLMKQTKVQGL 287 + + L Q + + Sbjct: 215 DKARATLAKKARGQLASQKCIDAI 238 >gi|229494115|ref|ZP_04387878.1| putative enoyl-CoA hydratase [Rhodococcus erythropolis SK121] gi|229318477|gb|EEN84335.1| putative enoyl-CoA hydratase [Rhodococcus erythropolis SK121] Length = 290 Score = 39.6 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 19/219 (8%), Positives = 57/219 (26%), Gaps = 28/219 (12%) Query: 36 PHVARIAIRGQIEDSQE-------LIERIERISRDDSATALIVSLSSPGGSAYAGEAIF- 87 VA + + + + L +R DD ++++ + P SA + Sbjct: 16 DSVAVVTLNRPDYRNAQNSVVTYALDAAFQRAVEDDDVKVIVLAGNGPHFSAGH--DLGT 73 Query: 88 ----RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 ++ V + + + + + + Sbjct: 74 PGRDHHVEYENKATMWWNHVDKPGGDQRFAREMEVYLGMCRRWREIPKPTIAMVQGACIA 133 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 L + ++ P + + ++ Sbjct: 134 GGLMLAWVCDMIVAADDAFFSDPVVRMGIPG-----VEYFAHPWMVGSRFAK-------- 180 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 +L G +T A ++G+++ V ++ + + + L Sbjct: 181 -EMLFTGDRFTAQRAYEIGMVNRVVARKHLEKETFELAG 218 >gi|254512409|ref|ZP_05124476.1| Clp protease [Rhodobacteraceae bacterium KLH11] gi|221536120|gb|EEE39108.1| Clp protease [Rhodobacteraceae bacterium KLH11] Length = 196 Score = 39.6 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G I D ++ ++ + ++ + + ++SPGG +G +I+ +Q +K + Sbjct: 24 IIFINGPIHDGMSHLVVAQLLHLEAENPNKEISIYINSPGGVVTSGLSIYDTMQYIKPK- 82 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + G G+ F P + + + + Sbjct: 83 -------------CSTLVIGQAASMGSVLLAGGEKGMRFSLPNSRIMVHQPSGGYQG--- 126 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 ++ + K + D+ + V + L + E Sbjct: 127 --QASDIMIHAAETQKLKDRLYDIYVRHTGQTKKAVEK----------ALDRDNFMSPEE 174 Query: 218 AKKVGLIDVV 227 AK G ID + Sbjct: 175 AKDWGHIDEI 184 >gi|86606575|ref|YP_475338.1| S49 family peptidase [Synechococcus sp. JA-3-3Ab] gi|86555117|gb|ABD00075.1| peptidase S49 (protease IV) family, nonpeptidase-like protein [Synechococcus sp. JA-3-3Ab] Length = 285 Score = 39.6 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 69/186 (37%), Gaps = 22/186 (11%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS++++ I + ++ +PGG A E I RA+ + + V V Sbjct: 67 IEDSEQVLRAIRLTPPNTPIDLIL---HTPGGLVLATEQIARALIRHPAK--VTVFVPHY 121 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 A S G +++ A++ IV +++G + L + V P+ Sbjct: 122 AMSGGTMLALAADEIVMDANAVLGPVDPQLGGYAAASIL-------QVVAEKPIAEIDDQ 174 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL---------VLSDGRIWTGAE 217 + A + MQ V + V R I ++ ++ T E Sbjct: 175 TLILADLARKAMQQVQNFVRDLLKDDV-PKRKIAPERIEPLIQYLTSGQVTHDYPITAEE 233 Query: 218 AKKVGL 223 A+++GL Sbjct: 234 AQRLGL 239 >gi|328767510|gb|EGF77559.1| hypothetical protein BATDEDRAFT_91564 [Batrachochytrium dendrobatidis JAM81] Length = 251 Score = 39.6 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 61/190 (32%), Gaps = 24/190 (12%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+++DS ++ ++ + ++ + ++SPGGS AG AI+ + Sbjct: 46 IVMLNGEVDDSVSAIIVAQLLFLEAENPEKPISFYINSPGGSVTAGMAIYDTYIQSP--- 102 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 A + S S++ + V+ P + + + Sbjct: 103 ----VATVCMGQACSMGSLLLTAGEPGHRSILPNARVMIHQPR------QAIIVYTTFGG 152 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + +A ++ + + + V +R + + Sbjct: 153 ASGQASDIAIHAKEILDIRERLNQIYVHHTHQSLDVIVNRMERD---------HFMSAEQ 203 Query: 218 AKKVGLIDVV 227 A GL+D V Sbjct: 204 ALTFGLVDKV 213 >gi|157124223|ref|XP_001660372.1| endopeptidase clp, putative [Aedes aegypti] gi|108882807|gb|EAT47032.1| endopeptidase clp, putative [Aedes aegypti] Length = 225 Score = 39.6 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D ++ ++ + ++ + + ++SPGGS AG AI+ +Q VK Sbjct: 53 IICLMGPIHDDLSSLIVAQLLFLQSENGTKPIHMYINSPGGSVTAGLAIYDTMQYVKPPV 112 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 + + L + A + + + + Sbjct: 113 ATWCVGQACSMGSLLLAAGAPGMRHSLPNARIMIHQPSG 151 >gi|32472152|ref|NP_865146.1| hypothetical protein RB2785 [Rhodopirellula baltica SH 1] gi|32397524|emb|CAD72830.1| conserved hypothetical protein [Rhodopirellula baltica SH 1] Length = 770 Score = 39.6 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 31/261 (11%), Positives = 80/261 (30%), Gaps = 10/261 (3%) Query: 40 RIAIRGQIEDSQELIERIERIS--RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G I S+ + + +V++ SPGG+ ++ ++ Sbjct: 325 LVRVTGNITGSRVRRWQSNLAASIDSPDVNTWLVAIDSPGGNLNRSASLAASLADPGIAI 384 Query: 98 PVI--TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 + E A + ++++ E ++ GS V+ + + + +S Sbjct: 385 QSVGGWVTGEARGDAALIALACQPLLMSPEATIGGSGADAMSADDVRRQSELIDMIAEST 444 Query: 156 KSSP--MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 S ++ P V+ + V ++ + +E + + + Sbjct: 445 GRSAALIRGMLDPSISVHRYVHRRSGRVRYATSEQIRQESNEDAPSDWQRMEKVELATGL 504 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS---IRKIKDWNPPKNYWFCDLKNLS-IS 269 A+A ++GL + + S L R + W +L I Sbjct: 505 NAAQAIELGLAEATAESLQTAASSVGLNEVPPELSDRGLVRWVERLGGQTGLAMSLLVIG 564 Query: 270 SLLEDTIPLMKQTKVQGLWAV 290 ++ + G ++ Sbjct: 565 FMMLSIEASAPGLGLPGFISL 585 >gi|315655111|ref|ZP_07908013.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii ATCC 51333] gi|315657031|ref|ZP_07909916.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315490592|gb|EFU80215.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii ATCC 51333] gi|315492423|gb|EFU82029.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 236 Score = 39.6 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 61/180 (33%), Gaps = 28/180 (15%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D + + + ++SPGGS A AI+ +Q +K + + Sbjct: 75 ASADDVMAQLLVLESQDPDSLITMYINSPGGSFTAMTAIYDTMQYIKPEIQTVCLGQAAS 134 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L A +A + V Q + + + + Sbjct: 135 AAAVLLAGGAPGKRLALPNARVLIHQPAIQGAQGQATDLAI------IAEEIDRMRAWLE 188 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 ++ + + ++ + + +I T +A + GLID V Sbjct: 189 ETLSKHSKRSVEQMH----------------------EDIDRDKILTAPQALEYGLIDQV 226 >gi|311695076|gb|ADP97949.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine bacterium HP15] Length = 201 Score = 39.6 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 63/192 (32%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 33 VIFMVGPVEDHMANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A+ S V L Y ++ I + Sbjct: 93 ATLCVGQAASMGAFLLAGGAAGKRACLPNSRVMIHQPLGGYQGQATDIEIHTREILKI-- 150 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + ++ + +++ A+ Sbjct: 151 -----------------RHTLNSILAHHTGQDLETIAK----------DTDRDNFMDPAQ 183 Query: 218 AKKVGLIDVVGG 229 AK+ GLID + Sbjct: 184 AKEYGLIDSILD 195 >gi|257065888|ref|YP_003152144.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerococcus prevotii DSM 20548] gi|256797768|gb|ACV28423.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerococcus prevotii DSM 20548] Length = 197 Score = 39.6 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D S +I ++ + +D + ++SPGG +G AI+ + +K Sbjct: 33 IIFLSGEVRDEISDIIIAQLLFLESEDPDKDIQFYINSPGGVVTSGLAIYDTMNYIKPDV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L S A + +S + Sbjct: 93 STICIGQAASMAAVLLSSGAKGKRYSLPSSNIMIHQPSGGAQGQ---------------- 136 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGA 216 + + + + +++S++ K +D T A Sbjct: 137 --------------ASDIVIQAEQIIKIKERLNKILSDNTGQSLKKIEKDTDRDFAMTAA 182 Query: 217 EAKKVGLIDVV 227 EA + GLID V Sbjct: 183 EALEYGLIDKV 193 >gi|163790237|ref|ZP_02184670.1| hypothetical protein CAT7_04934 [Carnobacterium sp. AT7] gi|159874512|gb|EDP68583.1| hypothetical protein CAT7_04934 [Carnobacterium sp. AT7] Length = 246 Score = 39.6 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 32/236 (13%), Positives = 84/236 (35%), Gaps = 21/236 (8%) Query: 40 RIAIRGQIE-----DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 + + G I D + + ++ S D +++ L+S GG + G I+ ++ Sbjct: 21 ILTLSGTIRQRYWDDDKSIDAKLVSDSLDGVTDDIVIYLNSTGGDVFQGIEIYNYLKNH- 79 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV---LFQYPYVKPFLDKLGVS 151 + + A++A ++++ A I+ TS + +K L+ L Sbjct: 80 SSHITVEVTGTAASAATFIVAGADEAIMNTGTSFMIHEASSFAWGNKADLKKTLNALETI 139 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW-FVRLVSESRNIPYDKTLVLSDG 210 +S+ + + ++N + + + + F V E++ D+ ++ Sbjct: 140 DESIIAIYTEKTGQSNEQLNDWMEEEKWFTAEEAVKYGFANKVKENKKDITDQID-IAAM 198 Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 + A+A + Q+ + + ++K+ P + L+ Sbjct: 199 INQSVAQAMEQF----------SAQATSKKHSIEKLNELKNEKPKQKSLLNKLRKG 244 >gi|15900641|ref|NP_345245.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae TIGR4] gi|15902700|ref|NP_358250.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae R6] gi|111657500|ref|ZP_01408244.1| hypothetical protein SpneT_02001290 [Streptococcus pneumoniae TIGR4] gi|116516216|ref|YP_816144.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae D39] gi|148985320|ref|ZP_01818543.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus pneumoniae SP3-BS71] gi|148989824|ref|ZP_01821118.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus pneumoniae SP6-BS73] gi|148992407|ref|ZP_01822102.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus pneumoniae SP9-BS68] gi|148997179|ref|ZP_01824833.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae SP11-BS70] gi|149003358|ref|ZP_01828247.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus pneumoniae SP14-BS69] gi|149007624|ref|ZP_01831241.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus pneumoniae SP18-BS74] gi|149020386|ref|ZP_01835278.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus pneumoniae SP23-BS72] gi|168484851|ref|ZP_02709796.1| Clp protease [Streptococcus pneumoniae CDC1873-00] gi|168486762|ref|ZP_02711270.1| Clp protease [Streptococcus pneumoniae CDC1087-00] gi|168488414|ref|ZP_02712613.1| Clp protease [Streptococcus pneumoniae SP195] gi|168490833|ref|ZP_02714976.1| Clp protease [Streptococcus pneumoniae CDC0288-04] gi|168492895|ref|ZP_02717038.1| Clp protease [Streptococcus pneumoniae CDC3059-06] gi|168575405|ref|ZP_02721341.1| Clp protease [Streptococcus pneumoniae MLV-016] gi|169832484|ref|YP_001694209.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae Hungary19A-6] gi|182683666|ref|YP_001835413.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae CGSP14] gi|221231543|ref|YP_002510695.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae ATCC 700669] gi|225854255|ref|YP_002735767.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae JJA] gi|225860721|ref|YP_002742230.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae Taiwan19F-14] gi|237650410|ref|ZP_04524662.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae CCRI 1974] gi|237822478|ref|ZP_04598323.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae CCRI 1974M2] gi|298230046|ref|ZP_06963727.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255823|ref|ZP_06979409.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502532|ref|YP_003724472.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae TCH8431/19A] gi|303255838|ref|ZP_07341879.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae BS455] gi|303260009|ref|ZP_07345983.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae SP-BS293] gi|303261415|ref|ZP_07347363.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae SP14-BS292] gi|303264082|ref|ZP_07350003.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae BS397] gi|303267620|ref|ZP_07353460.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae BS457] gi|303269546|ref|ZP_07355310.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae BS458] gi|307067350|ref|YP_003876316.1| ATp-dependent Clp protease [Streptococcus pneumoniae AP200] gi|307127702|ref|YP_003879733.1| Clp protease [Streptococcus pneumoniae 670-6B] gi|54036855|sp|P63788|CLPP_STRR6 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|54040893|sp|P63787|CLPP_STRPN RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|122278970|sp|Q04LF4|CLPP_STRP2 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|226706476|sp|B1IAS4|CLPP_STRPI RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|226706544|sp|B2INC9|CLPP_STRPS RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|254763803|sp|B8ZN39|CLPP_STRPJ RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|254763805|sp|C1CD96|CLPP_STRZJ RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|254763807|sp|C1CQK8|CLPP_STRZT RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|14972220|gb|AAK74885.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus pneumoniae TIGR4] gi|15458242|gb|AAK99460.1| ATP-dependent CLP protease proteolytic subunit [Streptococcus pneumoniae R6] gi|116076792|gb|ABJ54512.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus pneumoniae D39] gi|147756879|gb|EDK63919.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae SP11-BS70] gi|147758541|gb|EDK65539.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus pneumoniae SP14-BS69] gi|147760779|gb|EDK67750.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus pneumoniae SP18-BS74] gi|147922518|gb|EDK73637.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus pneumoniae SP3-BS71] gi|147924766|gb|EDK75850.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus pneumoniae SP6-BS73] gi|147928724|gb|EDK79737.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus pneumoniae SP9-BS68] gi|147930688|gb|EDK81670.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus pneumoniae SP23-BS72] gi|168994986|gb|ACA35598.1| Clp protease [Streptococcus pneumoniae Hungary19A-6] gi|172042007|gb|EDT50053.1| Clp protease [Streptococcus pneumoniae CDC1873-00] gi|182629000|gb|ACB89948.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae CGSP14] gi|183570255|gb|EDT90783.1| Clp protease [Streptococcus pneumoniae CDC1087-00] gi|183572984|gb|EDT93512.1| Clp protease [Streptococcus pneumoniae SP195] gi|183574558|gb|EDT95086.1| Clp protease [Streptococcus pneumoniae CDC0288-04] gi|183577054|gb|EDT97582.1| Clp protease [Streptococcus pneumoniae CDC3059-06] gi|183578670|gb|EDT99198.1| Clp protease [Streptococcus pneumoniae MLV-016] gi|220674003|emb|CAR68516.1| putative ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae ATCC 700669] gi|225723038|gb|ACO18891.1| Clp protease [Streptococcus pneumoniae JJA] gi|225727276|gb|ACO23127.1| Clp protease [Streptococcus pneumoniae Taiwan19F-14] gi|298238127|gb|ADI69258.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae TCH8431/19A] gi|301793906|emb|CBW36302.1| putative ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae INV104] gi|301799764|emb|CBW32333.1| putative ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae OXC141] gi|301801594|emb|CBW34292.1| putative ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae INV200] gi|302597222|gb|EFL64327.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae BS455] gi|302637549|gb|EFL68036.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae SP14-BS292] gi|302638928|gb|EFL69389.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae SP-BS293] gi|302640931|gb|EFL71314.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae BS458] gi|302642850|gb|EFL73157.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae BS457] gi|302646487|gb|EFL76713.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae BS397] gi|306408887|gb|ADM84314.1| Protease subunit of ATP-dependent Clp proteases [Streptococcus pneumoniae AP200] gi|306484764|gb|ADM91633.1| Clp protease [Streptococcus pneumoniae 670-6B] gi|327390104|gb|EGE88447.1| clp protease family protein [Streptococcus pneumoniae GA04375] gi|332073128|gb|EGI83607.1| clp protease family protein [Streptococcus pneumoniae GA17570] gi|332076026|gb|EGI86492.1| clp protease family protein [Streptococcus pneumoniae GA41301] gi|332077163|gb|EGI87625.1| clp protease family protein [Streptococcus pneumoniae GA17545] gi|332202611|gb|EGJ16680.1| clp protease family protein [Streptococcus pneumoniae GA41317] gi|332203901|gb|EGJ17968.1| clp protease family protein [Streptococcus pneumoniae GA47368] gi|332204756|gb|EGJ18821.1| clp protease family protein [Streptococcus pneumoniae GA47901] Length = 196 Score = 39.6 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 59/192 (30%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + DS + + +++PGGS AG AI + +K Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + + Sbjct: 87 QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + ++++E+ +K ++ W + Sbjct: 145 --------------------------KTRNTLEKILAENSGQSMEKVHADAERDNWMSAQ 178 Query: 217 EAKKVGLIDVVG 228 E + G ID + Sbjct: 179 ETLEYGFIDEIM 190 >gi|294055658|ref|YP_003549316.1| protein of unknown function DUF107 [Coraliomargarita akajimensis DSM 45221] gi|293614991|gb|ADE55146.1| protein of unknown function DUF107 [Coraliomargarita akajimensis DSM 45221] Length = 499 Score = 39.6 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 38/249 (15%), Positives = 81/249 (32%), Gaps = 24/249 (9%) Query: 38 VARIAIRGQIE--DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95 V I I G I + L ++ +D +I+ + +PGG+ + + + Sbjct: 64 VYVIPIEGPIAKPNLYILRRGLKEAINND-VEMVILKMDTPGGALGVCLEMMEMLDRF-- 120 Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 T V A SAG LI+ ++ I A +GS G++ + + L ++S Sbjct: 121 DGVTATYVDVDAISAGSLIAMTTDEIYFAPRGKIGSTGII--TGSGEDIPETLLRKMESY 178 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG----R 211 + + + + K ++ M ++ +V + + + R Sbjct: 179 MN-AVIRSYNDEDPLRAKVMKAMMELDFELELEGKTIVEAGELLTLTAKEAMEEYGNPPR 237 Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 G G E +L + I+D+ + N +L Sbjct: 238 PLLGE------------GIYESVDALLEARIGAENYVIRDFKVSYSEEIAKWMNGIAPAL 285 Query: 272 LEDTIPLMK 280 + + + Sbjct: 286 MGFGLLFLF 294 >gi|218779308|ref|YP_002430626.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfatibacillum alkenivorans AK-01] gi|259585946|sp|B8FA62|CLPP_DESAA RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|218760692|gb|ACL03158.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfatibacillum alkenivorans AK-01] Length = 201 Score = 39.6 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 58/191 (30%), Gaps = 31/191 (16%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + +I ++ + DD + ++SPGGS AG AI+ + +K + + Sbjct: 41 ANSIIAQLLFLESDDPEKDINFYINSPGGSVTAGMAIYDTMAYIKPEITTVCIGQAASMG 100 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L + + + + + + Sbjct: 101 AVLLAAGNHGKRYSLPNARILIHQPMGGFQGQ---------------------------- 132 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVG 228 + + + +++ P + +D + + EAK+ GLID V Sbjct: 133 --ASDIAIQAQEILRMKEALNEILASHTGKPLKQVQQDTDRDYFMSPLEAKEYGLIDHVI 190 Query: 229 GQEEVWQSLYA 239 E S+ Sbjct: 191 LNREDLDSIEE 201 >gi|146307078|ref|YP_001187543.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas mendocina ymp] gi|166214700|sp|A4XTZ5|CLPP_PSEMY RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|145575279|gb|ABP84811.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudomonas mendocina ymp] Length = 213 Score = 39.6 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 56/191 (29%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ + ++ + + ++SPGGS AG AI+ +Q +K Sbjct: 45 VIFLVGQVEDYMANLICAQLLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKADV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L A S V L + ++ I + Sbjct: 105 STTCIGQACSMGAFLLAGGAKGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFI-- 162 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 L++ + + + Sbjct: 163 ----------------------------RERLNELLAHHTGQSLETIERDTNRDNFMSAP 194 Query: 217 EAKKVGLIDVV 227 A + G++D V Sbjct: 195 RAVEYGIVDAV 205 >gi|83747693|ref|ZP_00944728.1| NfeD [Ralstonia solanacearum UW551] gi|207744010|ref|YP_002260402.1| membrane-bound serine protease (clpp class) protein [Ralstonia solanacearum IPO1609] gi|83725603|gb|EAP72746.1| NfeD [Ralstonia solanacearum UW551] gi|206595412|emb|CAQ62339.1| membrane-bound serine protease (clpp class) protein [Ralstonia solanacearum IPO1609] Length = 468 Score = 39.6 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 70/215 (32%), Gaps = 5/215 (2%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSP 76 V WS + V + + G I + ++ ++ + + +++ + +P Sbjct: 14 LAASVAAVWSGLALAAAAPVMVLPLTGAIGPASAAYVVHGLDVARK-EGMQLVVLQMDTP 72 Query: 77 GGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 GG + I +AI + AASAG I AS+I A + +G+ + Sbjct: 73 GGLDASMRQIIQAILASPVPVAGYVAPGGARAASAGTYILYASHIAAMAPATNLGAASPV 132 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 + S + + + + D++ + Sbjct: 133 AIGIGGHAPAGPTPANPTPTTPGDTAKPASAPAASGNEDTLARKQMHDAAAYIRGLAQLR 192 Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 RN + + + + + EA +ID++ Sbjct: 193 GRNADWGE-RAVREAVSLSADEAATQRVIDLIATS 226 >gi|74311435|ref|YP_309854.1| putative protease/scaffold protein [Shigella sonnei Ss046] gi|73854912|gb|AAZ87619.1| putative protease/scaffold protein [Shigella sonnei Ss046] Length = 381 Score = 39.6 bits (90), Expect = 0.61, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 62/205 (30%), Gaps = 34/205 (16%) Query: 38 VARIAIRGQIEDSQELIERI-ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 V + I +I + + I+ + + + + SPGG + G AI+ A++ + Sbjct: 13 VVHVRIYDEIGGYGVKASALTDEINACGNVPEIHLRIHSPGGDIFEGLAIYNALKNHPAK 72 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 K I + MAAS I+ + IV E +++ V Sbjct: 73 K--IVHIEGMAASMASFIAMCGDHIVMPENAMMMIHAPRGVTAGVSG------------- 117 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-G 215 V+ D++D + + + + W G Sbjct: 118 -----------------DVRRFADLMDKLGDTMAETYAGRTGRSKQEITAMMEAETWMDG 160 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYAL 240 E K G D V + + Sbjct: 161 NECKANGFADEVIPAITAMARIESK 185 >gi|256111294|ref|ZP_05452320.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase [Brucella melitensis bv. 3 str. Ether] gi|265992800|ref|ZP_06105357.1| 3-hydroxyacyl-CoA dehydrogenase [Brucella melitensis bv. 3 str. Ether] gi|262763670|gb|EEZ09702.1| 3-hydroxyacyl-CoA dehydrogenase [Brucella melitensis bv. 3 str. Ether] Length = 738 Score = 39.6 bits (90), Expect = 0.62, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%) Query: 51 QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106 QEL I+ + DD ++++ + G A E +F+ QK K + P Sbjct: 36 QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + + + A +P Sbjct: 96 DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARAASDAP 143 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 ++ V++ RL ++ D +++ G T AK +GL+ Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + +++ ++ L ++ ++ W+ + + L + + + G Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257 >gi|225682279|gb|EEH20563.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03] Length = 266 Score = 39.2 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 18/35 (51%) Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 + +G + G EA + G++D +GG +E + Sbjct: 169 VLEGHRFGGKEALEHGIVDGLGGLDEALALIEKRK 203 >gi|206900534|ref|YP_002251048.1| periplasmic serine protease [Dictyoglomus thermophilum H-6-12] gi|206739637|gb|ACI18695.1| periplasmic serine protease [Dictyoglomus thermophilum H-6-12] Length = 281 Score = 39.2 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 21/183 (11%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+E++ I D ++ +PGG A E I A++ + V V Sbjct: 67 IEDSEEVLRAIRLTPEDMPIDLIL---HTPGGLVLAAEQIAHALKNH--KGKVTVFVPHY 121 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 A S G I+ A++ IV E +++G + L+ + V+ K Sbjct: 122 AMSGGTFIALAADEIVMDENAVLGPVDPQLGEYPAASILNAINKK--GVEKVEDKTLI-- 177 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220 + A + ++ V +S + +SE + + WT EA+K Sbjct: 178 ---LGDVAEKAIRQVKESVFELLKDKMSE---EKAKEIAEILSTGTWTHDYPITVEEAQK 231 Query: 221 VGL 223 +GL Sbjct: 232 LGL 234 >gi|15613919|ref|NP_242222.1| hypothetical protein BH1356 [Bacillus halodurans C-125] gi|10173972|dbj|BAB05075.1| BH1356 [Bacillus halodurans C-125] Length = 445 Score = 39.2 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 66/137 (48%), Gaps = 8/137 (5%) Query: 5 LKKIKTRYVMLSLVTLTVVYF-----SWSSHVEDNSPHVARIAIRGQIE-DSQELIERIE 58 +++I+ Y L+ + + ++ + + P V I + ++E + ++R Sbjct: 1 MERIRWLYGFLACILIAILLAPLQIMAQGEFRTSDQPLVYYIPVEQEVERGLEAFLQRSL 60 Query: 59 RISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 + ++ A +++ +++PGG A + RA+++ P+ V + A SAG I+ + Sbjct: 61 DSAVEEGADHIVLEINTPGGRVDAAGNMARALRET--DIPITAYVIDQALSAGAYIALNA 118 Query: 119 NIIVAAETSLVGSIGVL 135 + IV A S +GS V+ Sbjct: 119 DEIVMAPGSTMGSAAVI 135 >gi|260575566|ref|ZP_05843564.1| Endopeptidase Clp [Rhodobacter sp. SW2] gi|259022209|gb|EEW25507.1| Endopeptidase Clp [Rhodobacter sp. SW2] Length = 210 Score = 39.2 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 57/190 (30%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D + ++ + ++ + + ++SPGG +G +I+ +Q +K R Sbjct: 38 IIFLSGPVHDGMSALICAQLLFLEAENPTKEISMYINSPGGVVTSGLSIYDTMQYIKPRI 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + S V Y Sbjct: 98 STLVIGQAASMGSLLLTAGQKGMRFSLPNSRVMVHQPSGGYQGQ---------------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + ++ K + + + V L + + Sbjct: 142 ---ATDIMIHAQETQKLKDRLNGIYVKHTGQPMEAV----------VAALERDNFMSAED 188 Query: 218 AKKVGLIDVV 227 AK GLID + Sbjct: 189 AKSWGLIDEI 198 >gi|226289657|gb|EEH45141.1| enoyl-CoA hydratase/isomerase family protein [Paracoccidioides brasiliensis Pb18] Length = 266 Score = 39.2 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 18/35 (51%) Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 + +G + G EA + G++D +GG +E + Sbjct: 169 VLEGHRFGGKEALEHGIVDGLGGLDEALALIEKRK 203 >gi|153836679|ref|ZP_01989346.1| membrane-bound serine protease [Vibrio parahaemolyticus AQ3810] gi|149750028|gb|EDM60773.1| membrane-bound serine protease [Vibrio parahaemolyticus AQ3810] Length = 459 Score = 39.2 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 79/218 (36%), Gaps = 7/218 (3%) Query: 36 PHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ-K 92 V + ++G I + L IE+ + + +I+ + +PGG A I AI Sbjct: 21 NTVWIVPVKGAIGPANSGYLTREIEQAQIN-GVSLVILKMDTPGGLDSAMRDIIHAITTS 79 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 + AASAG I AS++ AE + +G+ + + G Sbjct: 80 TTPIATWVGPSGSRAASAGTYILLASHVAAMAEATNLGAATPVAIGGAPQAPSSDDGKDN 139 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 +S S K + P M + V++ + + L +S+ Sbjct: 140 ES--SDENKPNAEKSGDQVPAKTAMEKKVINDAKAYIKGLAKLHDRNAQWAEKAVSEAAS 197 Query: 213 WTGAEAKKVGLIDVVGGQ-EEVWQSLYALGVDQSIRKI 249 EA ++ +IDV+ EE+ ++ V + + Sbjct: 198 LDAEEALELNVIDVIANSPEELVTAINGKSVKVNNLPV 235 >gi|226489631|emb|CAX74966.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog [Schistosoma japonicum] Length = 249 Score = 39.2 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 57/191 (29%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D ++ ++ + +D + + ++SPGG AG AI+ +Q +K Sbjct: 70 IICLMGAISDEVAGLVVAQLLYLQSEDKKIPIHIYINSPGGVVTAGLAIYDTMQFIKPPV 129 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A + A S + Sbjct: 130 ATWCVGQASSMGSLLLAAGAPGLRFALPHSRIMVHQPSGSAHGQ---------------- 173 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +++ + + + + + D + T Sbjct: 174 --------------ASDIKIHAEEIIKMRNIINTIYERHTKQSQEVIEKWMDRDYFMTAE 219 Query: 217 EAKKVGLIDVV 227 EA G++D+V Sbjct: 220 EAVSFGIVDMV 230 >gi|148657308|ref|YP_001277513.1| AMP-dependent synthetase and ligase [Roseiflexus sp. RS-1] gi|148569418|gb|ABQ91563.1| acrylyl-CoA reductase (NADPH) / 3-hydroxypropionyl-CoA dehydratase / 3-hydroxypropionyl-CoA synthetase [Roseiflexus sp. RS-1] Length = 1912 Score = 39.2 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 23/216 (10%), Positives = 59/216 (27%), Gaps = 30/216 (13%) Query: 37 HVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 +A + + ++ EL ++ ++R + A+I GS I Sbjct: 907 RIAIVTVTNPPVNALNERALDELNTIVDHLARREDVAAVI-----FTGSGTKSFVAGADI 961 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 +++ I + +++ ++ + ++ Sbjct: 962 KQMLEEMHTI--------EDALALPNNAHLAFRKIETMNKPCIAAINGVALGGGME---- 1009 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI--PYDKTLVLS 208 + P +E + + RL+ R ++ Sbjct: 1010 ----FALACHYRVADPHAEFGQPEINLRLLPGYGGTQRLPRLLYSRRGEAGLIKALQIIM 1065 Query: 209 DGRIWTGAEAKKVGLIDVVGG-QEEVWQSLYALGVD 243 GR A ++GL+D V E+ + + Sbjct: 1066 GGRTLNAEHAYEIGLVDKVAYGHEDALTVATRMARE 1101 >gi|319404099|emb|CBI77689.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella rochalimae ATCC BAA-1498] gi|319407112|emb|CBI80749.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella sp. 1-1C] Length = 210 Score = 39.2 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 27/210 (12%), Positives = 63/210 (30%), Gaps = 39/210 (18%) Query: 40 RIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G +ED+ ++ ++ + ++ + + ++SPGG +G AI+ +Q ++ Sbjct: 37 IIFINGPVEDNMAMLVCAQLLFLEAENPKKEINLYINSPGGVVTSGMAIYDTMQFIRPSV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + A+ A + + Sbjct: 97 STLCMGQAASMGSLLLTAGATGRRFALPNARIMVHQPSG--------------------- 135 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + Y+ L T Sbjct: 136 -------GFQGQASDIERHA--QDIIKMKRRLNEIYVQHTGQSYEVIENTLDRDHFMTAE 186 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 E+K+ GLID +V Q ++ Sbjct: 187 ESKQFGLID------DVIQYRAETEKEEKD 210 >gi|298346554|ref|YP_003719241.1| endopeptidase Clp [Mobiluncus curtisii ATCC 43063] gi|304389728|ref|ZP_07371687.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236615|gb|ADI67747.1| endopeptidase Clp [Mobiluncus curtisii ATCC 43063] gi|304326904|gb|EFL94143.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 235 Score = 39.2 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 61/180 (33%), Gaps = 28/180 (15%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D + + + ++SPGGS A AI+ +Q +K + + Sbjct: 75 ASADDVMAQLLVLESQDPDSLITMYINSPGGSFTAMTAIYDTMQYIKPEIQTVCLGQAAS 134 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L A +A + V Q + + + + Sbjct: 135 AAAVLLAGGAPGKRLALPNARVLIHQPAIQGAQGQATDLAI------IAEEIDRMRAWLE 188 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 ++ + + ++ + + +I T +A + GLID V Sbjct: 189 ETLSKHSKRSVEQMH----------------------EDIDRDKILTAPQALEYGLIDQV 226 >gi|219850369|ref|YP_002464802.1| hypothetical protein Cagg_3527 [Chloroflexus aggregans DSM 9485] gi|219544628|gb|ACL26366.1| protein of unknown function DUF114 [Chloroflexus aggregans DSM 9485] Length = 275 Score = 39.2 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 66/183 (36%), Gaps = 21/183 (11%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+ ++ I+ RD ++ +PGG A E I RA+++ + V V Sbjct: 67 IEDSEAVLRAIKMTDRDIPIDLIL---HTPGGLVLASEQIARALRRHPAK--VTVFVPHY 121 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 A S G LI+ A++ IV E +++G + L L S Sbjct: 122 AMSGGTLIALAADEIVMDENAVLGPVDPQLGQHPAASILRVLERKPISEIDDETLMMADI 181 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220 + + + +++ ++ +WT EA++ Sbjct: 182 AEKAIRQVKHTVCELLSDKMSV----------EKAEEVAHTLASGVWTHDYPITVREARE 231 Query: 221 VGL 223 +GL Sbjct: 232 LGL 234 >gi|313672560|ref|YP_004050671.1| nodulation efficiency protein nfed [Calditerrivibrio nitroreducens DSM 19672] gi|312939316|gb|ADR18508.1| Nodulation efficiency protein NfeD [Calditerrivibrio nitroreducens DSM 19672] Length = 416 Score = 39.2 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 89/283 (31%), Gaps = 48/283 (16%) Query: 11 RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-ELIE-RIERISRDDSATA 68 R+++++L + + + I + G I + + I+ IE SR DS Sbjct: 3 RFILIALFLIFSLPVFSKE--------IYTIEVNGIITEFTYKFIKVNIENASRADSV-- 52 Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 +V L +PGG E+ + +Q K + + Sbjct: 53 FLVKLDTPGG---ILESTRKIVQLFLESKIPVVVYVSPQGARATSAGAFIA--------- 100 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 L + + P + M+ V++ Sbjct: 101 -------------------LSSNYLLMSDGTHIGAAHPVNITGEDIKGDMRKKVENDTTA 141 Query: 189 FVRLVSESRNIPYDKTLVLSDGRI-WTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSI 246 F+R +++ R + I T EA ++D + +EE+ + + + Sbjct: 142 FIRSIAQKRGKNEQIATEMVINSISLTAREAYDKRIVDDIVNTEEELIEKIKNRFNIKET 201 Query: 247 RKIKDWNP---PKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 +K + P K +F N+ + LL + + K+ G Sbjct: 202 LFLKKYEPSITEKIAFFLSDPNIIVLLLLIAIASIFLEFKMPG 244 >gi|17988842|ref|NP_541475.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase [Brucella melitensis bv. 1 str. 16M] gi|256043669|ref|ZP_05446594.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase [Brucella melitensis bv. 1 str. Rev.1] gi|260564859|ref|ZP_05835344.1| FadB family protein [Brucella melitensis bv. 1 str. 16M] gi|265990089|ref|ZP_06102646.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella melitensis bv. 1 str. Rev.1] gi|17984664|gb|AAL53739.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase [Brucella melitensis bv. 1 str. 16M] gi|260152502|gb|EEW87595.1| FadB family protein [Brucella melitensis bv. 1 str. 16M] gi|263000758|gb|EEZ13448.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella melitensis bv. 1 str. Rev.1] Length = 738 Score = 39.2 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%) Query: 51 QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106 QEL I+ + DD ++++ + G A E +F+ QK K + P Sbjct: 36 QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + + + A +P Sbjct: 96 DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARAASDAP 143 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 ++ V++ RL ++ D +++ G T AK +GL+ Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + +++ ++ L ++ ++ W+ + + L + + + G Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257 >gi|315648325|ref|ZP_07901425.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus vortex V453] gi|315276260|gb|EFU39604.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus vortex V453] Length = 193 Score = 39.2 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 62/188 (32%), Gaps = 33/188 (17%) Query: 43 IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102 I I +S +I ++ ++ +D + + ++SPGGS AG I+ +Q +K + I Sbjct: 36 IDDAIANS--IIAQLLFLAAEDPEKDIHMYINSPGGSVSAGFGIYDTMQIIKPQVSTICT 93 Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 + A L++ A+ +A S + Sbjct: 94 GFAASYGAILLLAGATGKRLALPNSEIMIHQPHGGVQGQ--------------------- 132 Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKV 221 + + + + ++SE ++ + + EAK Sbjct: 133 ---------ATDIAITAKRIIKTREKLAHIISERTGQSVERVEMDMERDYFMSAQEAKDY 183 Query: 222 GLIDVVGG 229 G+ID + Sbjct: 184 GIIDDIVT 191 >gi|300786519|ref|YP_003766810.1| protease subunit of ATP-dependent Clp protease [Amycolatopsis mediterranei U32] gi|299796033|gb|ADJ46408.1| protease subunit of ATP-dependent Clp protease [Amycolatopsis mediterranei U32] Length = 193 Score = 39.2 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 54/178 (30%), Gaps = 31/178 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 +I ++ ++ DD A + ++SPGGS AG AI+ +Q VK Sbjct: 44 IIAQLLLLAADDPAKDITFYINSPGGSVTAGMAIYDTMQLVKPDVSTWG-----LGFVAS 98 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 + + + L+ + ++ P ++I++ MK Sbjct: 99 MGQFLLSSGTPGKRYLLPNTRIVMHQPSAGISGAAADIAIQAEVFGKMK----------- 147 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGG 229 + + ++ R + EA G +D + Sbjct: 148 --------------RRIAEITARQTGQTVERITADADRDRWFDADEALTYGFVDHIVT 191 >gi|225686560|ref|YP_002734532.1| Fatty acid oxidation complex subunit alpha [Brucella melitensis ATCC 23457] gi|256262303|ref|ZP_05464835.1| FadB [Brucella melitensis bv. 2 str. 63/9] gi|225642665|gb|ACO02578.1| Fatty acid oxidation complex subunit alpha [Brucella melitensis ATCC 23457] gi|263092029|gb|EEZ16326.1| FadB [Brucella melitensis bv. 2 str. 63/9] gi|326410946|gb|ADZ68010.1| Fatty acid oxidation complex subunit alpha [Brucella melitensis M28] gi|326554237|gb|ADZ88876.1| Fatty acid oxidation complex subunit alpha [Brucella melitensis M5-90] Length = 738 Score = 39.2 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%) Query: 51 QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106 QEL I+ + DD ++++ + G A E +F+ QK K + P Sbjct: 36 QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + + + A +P Sbjct: 96 DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARAASDAP 143 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 ++ V++ RL ++ D +++ G T AK +GL+ Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + +++ ++ L ++ ++ W+ + + L + + + G Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257 >gi|253796888|gb|ACT35699.1| capsid protein [Wolbachia phage WO] gi|253796910|gb|ACT35710.1| capsid protein [Wolbachia phage WO] Length = 136 Score = 39.2 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P + ++++ +Q V Y F++L++ +R + +K G + G +A ++GL D Sbjct: 1 PHEPMTSESLESLQKEVGRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59 Query: 226 VV 227 + Sbjct: 60 GM 61 >gi|316935514|ref|YP_004110496.1| enoyl-CoA hydratase/isomerase [Rhodopseudomonas palustris DX-1] gi|315603228|gb|ADU45763.1| Enoyl-CoA hydratase/isomerase [Rhodopseudomonas palustris DX-1] Length = 282 Score = 39.2 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 35/260 (13%), Positives = 70/260 (26%), Gaps = 29/260 (11%) Query: 31 VEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAY 81 VE P VARI + D++ +L + RDDS +I++ + P SA Sbjct: 9 VERPDPAVARIVMNRP--DARNAQNLQMTYDLNAAFDDAVRDDSVKVIILAGAGPHFSAG 66 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + + P + + I T ++ Sbjct: 67 H-DLRATTKNEAGVDFPPVGHWGGFREPGAHGRMAREQEIYLQITRRWRNLAKPMIAEVH 125 Query: 142 KPFLD---KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L + + +S P + + L Sbjct: 126 GKCIAGGLMLAWACDLIVASDNAEFCDPVVTM--------GVCGVEWFVHPWEL------ 171 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P +L W+ EA ++G+++ V E+ L + + K Sbjct: 172 GPRKAKELLFTADSWSAQEAHQLGMVNHVVPATELSAFTLQLAQRIAAKPSFALKMTKEA 231 Query: 259 WFCDLKNLSISSLLEDTIPL 278 + + ++ L Sbjct: 232 VNRSVDIQGQPAAIDQAFAL 251 >gi|226489629|emb|CAX74965.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog [Schistosoma japonicum] Length = 253 Score = 39.2 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 57/191 (29%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D ++ ++ + +D + + ++SPGG AG AI+ +Q +K Sbjct: 74 IICLMGSISDEVAGLVVAQLLYLQSEDKKIPIHIYINSPGGVVTAGLAIYDTMQFIKPPV 133 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A + A S + Sbjct: 134 ATWCVGQASSMGSLLLAAGAPGLRFALPHSRIMVHQPSGSAHGQ---------------- 177 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 +++ + + + + + D + T Sbjct: 178 --------------ASDIKIHAEEIIKMRNIINTIYERHTKQSQEVIEKWMDRDYFMTAE 223 Query: 217 EAKKVGLIDVV 227 EA G++D+V Sbjct: 224 EAVSFGIVDMV 234 >gi|327539255|gb|EGF25878.1| Nodulation efficiency, NfeD [Rhodopirellula baltica WH47] Length = 754 Score = 39.2 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 29/264 (10%), Positives = 81/264 (30%), Gaps = 16/264 (6%) Query: 40 RIAIRGQIEDSQELIERIERIS--RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G I S+ + + +V++ SPGG+ ++ ++ Sbjct: 309 LVRVTGNITGSRVRRWQSNLAASIDSPDVNTWLVAIDSPGGNLNRSASLAASLADPGIAI 368 Query: 98 PVI--TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 + E A + ++++ E ++ GS V+ + + + +S Sbjct: 369 QSVGGWVTGEARGDAALIALACQPLLMSPEATIGGSGADAMSADDVRRQSELIDMIAEST 428 Query: 156 KSSP--MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 S ++ P V+ + V ++ + +E + + + Sbjct: 429 GRSAALIRGMLDPSISVHRYVHRRSGRVRYATSEQIRQESNEDAPSDWQRMEKVELATGL 488 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK------IKDWNPPKNYWFCDLKNLS 267 A+A ++GL + E ++ + + + W +L Sbjct: 489 NAAQAIELGLAEATA---ESLRTAASSVGLNEVPPELSDRGLVRWVERLGGQTGLAMSLL 545 Query: 268 -ISSLLEDTIPLMKQTKVQGLWAV 290 I ++ + G ++ Sbjct: 546 VIGFMMLSIEASAPGLGLPGFISL 569 >gi|116515217|ref|YP_802846.1| hypothetical protein BCc_293 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257071|gb|ABJ90753.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease, heat shock protein F21.5 [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 200 Score = 39.2 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 54/188 (28%), Gaps = 32/188 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G I+D + +I +I + ++ + + ++SPGG +G +I+ +Q V+ + Sbjct: 41 IIFITGIIDDNIASIVISQILFLESENKKKDIFIYINSPGGIITSGLSIYDTMQFVQPKI 100 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A+ ++ + + K K Sbjct: 101 NTICIGQAVYAAILLCSGNKGKRFSLPHARIMLHQPLGGFKGQASDIMIHAQEIKKIKKI 160 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + +D ++ E Sbjct: 161 INNLLSYHTKQPIKKIKKDTERDY------------------------------FFSAQE 190 Query: 218 AKKVGLID 225 A K GLID Sbjct: 191 AIKYGLID 198 >gi|254695819|ref|ZP_05157647.1| FadB, fatty oxidation complex, alpha subunit [Brucella abortus bv. 3 str. Tulya] gi|261216239|ref|ZP_05930520.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella abortus bv. 3 str. Tulya] gi|260917846|gb|EEX84707.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella abortus bv. 3 str. Tulya] Length = 738 Score = 39.2 bits (89), Expect = 0.68, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%) Query: 51 QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106 QEL I+ + DD ++++ + G A E +F+ QK K + P Sbjct: 36 QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + + + A +P Sbjct: 96 DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARAASDAP 143 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 ++ V++ RL ++ D +++ G T AK +GL+ Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + +++ ++ L ++ ++ W+ + + L + + + G Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257 >gi|62317371|ref|YP_223224.1| FadB, fatty oxidation complex subunit alpha [Brucella abortus bv. 1 str. 9-941] gi|83269347|ref|YP_418638.1| fatty oxidation complex subunit alpha [Brucella melitensis biovar Abortus 2308] gi|189022623|ref|YP_001932364.1| FadB, fatty oxidation complex, alpha subunit [Brucella abortus S19] gi|237816923|ref|ZP_04595915.1| Fatty acid oxidation complex subunit alpha [Brucella abortus str. 2308 A] gi|254690870|ref|ZP_05154124.1| FadB, fatty oxidation complex, alpha subunit [Brucella abortus bv. 6 str. 870] gi|254698651|ref|ZP_05160479.1| FadB, fatty oxidation complex, alpha subunit [Brucella abortus bv. 2 str. 86/8/59] gi|254732098|ref|ZP_05190676.1| FadB, fatty oxidation complex, alpha subunit [Brucella abortus bv. 4 str. 292] gi|256256055|ref|ZP_05461591.1| FadB, fatty oxidation complex, alpha subunit [Brucella abortus bv. 9 str. C68] gi|260544607|ref|ZP_05820428.1| FadB protein [Brucella abortus NCTC 8038] gi|260756452|ref|ZP_05868800.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella abortus bv. 6 str. 870] gi|260759884|ref|ZP_05872232.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella abortus bv. 4 str. 292] gi|260763122|ref|ZP_05875454.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella abortus bv. 2 str. 86/8/59] gi|260882274|ref|ZP_05893888.1| 3-hydroxyacyl-CoA dehydrogenase [Brucella abortus bv. 9 str. C68] gi|297249409|ref|ZP_06933110.1| FadB, fatty oxidation complex, alpha subunit [Brucella abortus bv. 5 str. B3196] gi|62197564|gb|AAX75863.1| FadB, fatty oxidation complex, alpha subunit [Brucella abortus bv. 1 str. 9-941] gi|82939621|emb|CAJ12610.1| NAD binding site:Enoyl-CoA hydratase/isomerase:3-hydroxyacyl-CoA dehydrogenase, C-terminal:3-hydroxyacyl-CoA dehydrogenase, N [Brucella melitensis biovar Abortus 2308] gi|189021197|gb|ACD73918.1| FadB, fatty oxidation complex, alpha subunit [Brucella abortus S19] gi|237787736|gb|EEP61952.1| Fatty acid oxidation complex subunit alpha [Brucella abortus str. 2308 A] gi|260097878|gb|EEW81752.1| FadB protein [Brucella abortus NCTC 8038] gi|260670202|gb|EEX57142.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella abortus bv. 4 str. 292] gi|260673543|gb|EEX60364.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella abortus bv. 2 str. 86/8/59] gi|260676560|gb|EEX63381.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella abortus bv. 6 str. 870] gi|260871802|gb|EEX78871.1| 3-hydroxyacyl-CoA dehydrogenase [Brucella abortus bv. 9 str. C68] gi|297173278|gb|EFH32642.1| FadB, fatty oxidation complex, alpha subunit [Brucella abortus bv. 5 str. B3196] Length = 738 Score = 39.2 bits (89), Expect = 0.68, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%) Query: 51 QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106 QEL I+ + DD ++++ + G A E +F+ QK K + P Sbjct: 36 QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + + + A +P Sbjct: 96 DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARAASDAP 143 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 ++ V++ RL ++ D +++ G T AK +GL+ Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + +++ ++ L ++ ++ W+ + + L + + + G Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257 >gi|226227816|ref|YP_002761922.1| ATP-dependent Clp protease proteolytic subunit [Gemmatimonas aurantiaca T-27] gi|226091007|dbj|BAH39452.1| ATP-dependent Clp protease proteolytic subunit [Gemmatimonas aurantiaca T-27] Length = 204 Score = 39.2 bits (89), Expect = 0.68, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 57/191 (29%), Gaps = 32/191 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I D +I ++ + D+ + + ++SPGGS AG A++ +Q +K Sbjct: 31 IIFLGSPINDDVANIIIAQMLFLDADNPEKPIHLYINSPGGSVSAGLAMYDTMQFIKAPV 90 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L + A A S + ++ Sbjct: 91 YTTCMGMAASMGAFLLCAGAPGHRAALPHSRIMIHQPSQNGGGGSASDIEIQAREILYLR 150 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + L+++ ++ R + Sbjct: 151 AK-----------------------------MNELMAKHTGRQVEQVERDTDRDRFMSAD 181 Query: 217 EAKKVGLIDVV 227 +AK+ GLID V Sbjct: 182 DAKEYGLIDNV 192 >gi|225848210|ref|YP_002728373.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sulfurihydrogenibium azorense Az-Fu1] gi|225644423|gb|ACN99473.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sulfurihydrogenibium azorense Az-Fu1] Length = 202 Score = 39.2 bits (89), Expect = 0.69, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 31/178 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGG AG AI+ + +K I + A Sbjct: 49 IVAQLLFLEAEDPEKDIYMYINSPGGVVTAGFAIYDTMNYIKPDVVTICIGQAASMGAFL 108 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A + + + L + ++ Sbjct: 109 LSAGAKGKRYSLPNARIMIHQPLGGFQGQATDIEIHARE--------------------- 147 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGG 229 + +++ P +K ++ + + EAK+ GLID V Sbjct: 148 ---------ILRLKRMLNEYLAKHTGQPIEKIEADTERDYFMSAEEAKEYGLIDKVIY 196 >gi|544044|sp|P36398|CLPP_STRSL RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|347999|gb|AAA26891.1| ATP-dependent protease proteolytic subunit [Streptococcus salivarius] Length = 196 Score = 39.2 bits (89), Expect = 0.69, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 2/155 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 27 IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S + + D + +K+ Sbjct: 87 QTIVMGMAASMGTVIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + P + D+ L Sbjct: 147 RNNLEQILADNSGQPIEKVHVDAERDNWMSAQETL 181 >gi|322383234|ref|ZP_08057045.1| ATP-dependent Clp protease proteolytic subunit-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152503|gb|EFX45289.1| ATP-dependent Clp protease proteolytic subunit-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 191 Score = 39.2 bits (89), Expect = 0.69, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 65/197 (32%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I I+D +I ++ +S D+ + + ++SPGGS AG I+ +Q +K Sbjct: 24 IIFIGSAIDDDVVNLVIAQLLFLSAQDADKDIHLYINSPGGSVTAGLGIYDTMQYIKPDV 83 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A S V L V+ + + + Sbjct: 84 STICVGMAASMGSLLLTAGAKGKRFALPNSEVMIHQPLG---GVRGQAADIKIHADWILK 140 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216 + K YDK +D + Sbjct: 141 TRKKLNEIYVH---------------------------HTGQTYDKIDKDTDRDNFLSAL 173 Query: 217 EAKKVGLIDVVGGQEEV 233 +AK+ GLID V + ++ Sbjct: 174 DAKEYGLIDEVITRSDL 190 >gi|313891327|ref|ZP_07824945.1| endopeptidase Clp [Streptococcus pseudoporcinus SPIN 20026] gi|332522859|ref|ZP_08399111.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Streptococcus porcinus str. Jelinkova 176] gi|313120394|gb|EFR43515.1| endopeptidase Clp [Streptococcus pseudoporcinus SPIN 20026] gi|332314123|gb|EGJ27108.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Streptococcus porcinus str. Jelinkova 176] Length = 196 Score = 39.2 bits (89), Expect = 0.70, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 62/197 (31%), Gaps = 31/197 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 27 IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D V+ + +K+ Sbjct: 87 QTIVMGMAASMGTIIASSGAKGKRFMLPNAEYLIHQPMGGAGSGTQQTDMAIVAEQLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 ++++++ + ++ W Sbjct: 147 RK----------------------------RLEKILADNSGKTIKQIHKDAERDYWMDAK 178 Query: 217 EAKKVGLIDVVGGQEEV 233 E + G ID + E+ Sbjct: 179 ETLEYGFIDEIMENNEL 195 >gi|238695592|ref|YP_002922619.1| P05 [Xanthomonas phage phiL7] gi|190343959|gb|ACE75745.1| P05 [Xanthomonas phage phiL7] Length = 245 Score = 39.2 bits (89), Expect = 0.70, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 69/231 (29%), Gaps = 44/231 (19%) Query: 33 DNSPHVAR-----IAIRGQIEDS----QELIERIERISRDDSATALIVSLSSPGGSAYAG 83 +P A I I G+I + +I ++ RD + V++ SPGG +AG Sbjct: 30 AGTPQAAVMHGRAIDIFGEIGEDLYGEGTTSAQISQMLRDMGPGDVTVNIDSPGGDMFAG 89 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 AI+ ++ + + + AS V A V ++ + Sbjct: 90 LAIYNQLRAHDG-----------VVTVNVVGTAASAASVIAMAGDVVNMHPAAFIMIHQT 138 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 +L G S + + ++ + + P + Sbjct: 139 WLLAAGNSRDFIALAE---------------------MLAPFDKAMAEIYASRTGKPLAE 177 Query: 204 TLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 L W EA GL D V E L +I D+N Sbjct: 178 VEQLMAEETWFNAEEAVAYGLADKVLDPE--ASKNKRLSASTGKPEIPDFN 226 >gi|159905311|ref|YP_001548973.1| hypothetical protein MmarC6_0926 [Methanococcus maripaludis C6] gi|159886804|gb|ABX01741.1| protein of unknown function DUF114 [Methanococcus maripaludis C6] Length = 274 Score = 39.2 bits (89), Expect = 0.70, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 IEDS+E++ I D ++ +PGG A E I A+++ K + VI + Sbjct: 66 TIEDSEEILRAIRLTPEDMPIDLIL---HTPGGLVLASEQIATALKEHKAKTTVIIPHYA 122 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 M+ G LI+ A++ I+ + +++G + ++ + Sbjct: 123 MSG--GSLIALAADEIIIDKNAVMGPVDPQVGQYPAASIINAINTKY 167 >gi|328948166|ref|YP_004365503.1| ATP-dependent Clp protease proteolytic subunit [Treponema succinifaciens DSM 2489] gi|328448490|gb|AEB14206.1| ATP-dependent Clp protease proteolytic subunit [Treponema succinifaciens DSM 2489] Length = 203 Score = 39.2 bits (89), Expect = 0.71, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + ++ +I + ++ + + ++SPGGS AG AI+ +Q V+ Sbjct: 34 IIFVDGEIRDETADLIVAQILYLESENPEKDISMYINSPGGSVTAGLAIYDTMQYVRCDI 93 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 I + A L A +S V Sbjct: 94 QTICMGQAASMGAIILAGGTIGKRYALPSSRVMIHQPWG 132 >gi|325271030|ref|ZP_08137615.1| hypothetical protein HMPREF9141_2825 [Prevotella multiformis DSM 16608] gi|324986628|gb|EGC18626.1| hypothetical protein HMPREF9141_2825 [Prevotella multiformis DSM 16608] Length = 348 Score = 39.2 bits (89), Expect = 0.71, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 62/195 (31%), Gaps = 38/195 (19%) Query: 45 GQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH 104 G I +Q + + + + V ++S GG Y G AIF A++ ++ + V Sbjct: 29 GTITSAQ-ITRELMAAEA--TYKNIDVRINSIGGEVYTGIAIFNALRA--SKANITIYVD 83 Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 +AAS +I+ + + + + V + + ++S++ Sbjct: 84 GVAASMASVIALCGKPVYMSRYARLMLHSVSGGCYGNTRDMKDMISQMESLE-------- 135 Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGR--IWTGAEAKKV 221 + ++ + DG T EAK Sbjct: 136 ----------------------DTLCDMYADKLGKDKAEIKSSYFDGTDHWLTAEEAKIS 173 Query: 222 GLIDVVGGQEEVWQS 236 G ID + + V + Sbjct: 174 GFIDGIYDADPVPEE 188 >gi|317130215|ref|YP_004096497.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus cellulosilyticus DSM 2522] gi|315475163|gb|ADU31766.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus cellulosilyticus DSM 2522] Length = 195 Score = 39.2 bits (89), Expect = 0.71, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 61/192 (31%), Gaps = 33/192 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + ++ ++ ++ DD + + ++SPGGS AG AIF +Q ++ + Sbjct: 29 IIMLGSAIDDNVANSIVSQLLFLAADDPEKDISLYINSPGGSITAGMAIFDTMQFIQPKV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A S V L ++ Sbjct: 89 QTICIGMAASMGAFLLAAGEPGKRFALPNSEVMIHQPLGGAQGQAADIEIHAKR------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + +++E P + T Sbjct: 143 ------------------------IVQMREKLNEILAERTGQPIEVIARDTDRDNFMTSF 178 Query: 217 EAKKVGLIDVVG 228 EAKK GLID V Sbjct: 179 EAKKYGLIDEVM 190 >gi|195146760|ref|XP_002014352.1| GL19149 [Drosophila persimilis] gi|194106305|gb|EDW28348.1| GL19149 [Drosophila persimilis] Length = 253 Score = 39.2 bits (89), Expect = 0.71, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D S ++ ++ + ++ + + ++SPGG AG AI+ +Q VK Sbjct: 55 IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A + + I Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYS-------LPNARIMIHQPSGGAQGQATDILIHAE 167 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 +K + S A +++ T E Sbjct: 168 EIIKIKRQLTSIYVKHAKNSYEEMCQRMERDH----------------------FMTPDE 205 Query: 218 AKKVGLIDVV 227 AK +G+ID V Sbjct: 206 AKILGIIDHV 215 >gi|33519711|ref|NP_878543.1| ATP-dependent Clp protease proteolytic subunit [Candidatus Blochmannia floridanus] gi|60389741|sp|Q7VRH1|CLPP_BLOFL RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|33504056|emb|CAD83317.1| ATP-dependent Clp protease proteolytic subunit [Candidatus Blochmannia floridanus] Length = 209 Score = 39.2 bits (89), Expect = 0.71, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 58/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+IE+ ++ +I + +D + + ++SPGG AG +I+ +Q VK Sbjct: 44 IIFVIGKIENFMANLIVAQIMFLESEDPVKDIHLYINSPGGEVTAGMSIYDIMQFVKPNI 103 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L + + S V L Sbjct: 104 STYCIGQAASMGAFLLAAGTTGKRFCLPNSRVMIHQPLGSLHGQ---------------- 147 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + + +L+++ D + + Sbjct: 148 --------------ATDIAIHATEILKVKENINKLMAKHTGKSIDVIRQDMERDCFLSAD 193 Query: 217 EAKKVGLIDVV 227 E+ K GL+D V Sbjct: 194 ESVKYGLVDSV 204 >gi|323449361|gb|EGB05250.1| hypothetical protein AURANDRAFT_9147 [Aureococcus anophagefferens] Length = 57 Score = 39.2 bits (89), Expect = 0.71, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 26/50 (52%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102 L+ ++ ++ DD + + ++SPGGS AG AI+ +Q V + Sbjct: 7 LVAQLLYLANDDPTKDITLYINSPGGSVSAGMAIYDTMQFVPCDVSTVCF 56 >gi|255102472|ref|ZP_05331449.1| ATP-dependent Clp protease proteolytic subunit [Clostridium difficile QCD-63q42] Length = 194 Score = 39.2 bits (89), Expect = 0.71, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 56/176 (31%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGGS +G AI+ +Q +K I + A Sbjct: 44 IVAQLLFLEAEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A +A S + L ++ I + Sbjct: 104 LAAGAKGKRLALPNSEIMIHQPLGGAQGQATDIEIHAKRILKI----------------- 146 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227 + SE P +K + EAK+ GLID V Sbjct: 147 -------------KETLNEIFSERTGQPLEKIKMDTERDNFMSALEAKEYGLIDEV 189 >gi|254503951|ref|ZP_05116102.1| enoyl-CoA hydratase/isomerase family protein [Labrenzia alexandrii DFL-11] gi|222440022|gb|EEE46701.1| enoyl-CoA hydratase/isomerase family protein [Labrenzia alexandrii DFL-11] Length = 260 Score = 39.2 bits (89), Expect = 0.72, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 19/54 (35%) Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 + R+ T EA + GL+ V +++ L + K + K Sbjct: 162 MLTNRVLTAKEACEWGLVTRVVSPDDLMAEARKLAAQFANGPTKAYGGVKRLLQ 215 >gi|310816210|ref|YP_003964174.1| Protease subunit of ATP-dependent Clp protease [Ketogulonicigenium vulgare Y25] gi|308754945|gb|ADO42874.1| Protease subunit of ATP-dependent Clp protease [Ketogulonicigenium vulgare Y25] Length = 207 Score = 39.2 bits (89), Expect = 0.73, Method: Composition-based stats. Identities = 24/190 (12%), Positives = 62/190 (32%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED ++ ++ + ++ + + ++SPGG +G +I+ +Q ++ + Sbjct: 37 IIFVSGVVEDGMSQLIVAQLLHLEAENPKKEISMYINSPGGVVTSGLSIYDTMQYIRPKV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + + S V + Sbjct: 97 STLVIGQAASMGSLLLAAGEAGMRYSLPNSRVMVHQPSGGFQGQVT-------------- 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + + K + + ++ V L + E Sbjct: 143 -----DIMIHARESEKLKRRLNEIYVKHTGQSYEAVEA----------ALERDNFKSAEE 187 Query: 218 AKKVGLIDVV 227 AK+ GLID + Sbjct: 188 AKEFGLIDEI 197 >gi|7524837|ref|NP_045839.1| ATP-dependent Clp protease proteolytic subunit [Chlorella vulgaris] gi|3023501|sp|P56317|CLPP_CHLVU RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|2224431|dbj|BAA57915.1| ATP-dependent Clp protease proteolytic subunit [Chlorella vulgaris] Length = 201 Score = 39.2 bits (89), Expect = 0.73, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 57/183 (31%), Gaps = 33/183 (18%) Query: 50 SQELIERI----ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 EL ++ ++ ++ L + ++SPGGS G A++ A+ +K+ I Sbjct: 40 DDELANQLIGIMLYLNAEEQNKGLYIYINSPGGSVTCGIAVYDAMNYIKSEVTTICV--- 96 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 + + S + + L + + + Sbjct: 97 ------------------GTAASMASFILAGGDRGKRIALPHSRIMVHQPEGGSQGQASE 138 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 SE Q S L SR++ D+ + EAK+ GL+D Sbjct: 139 VLSESQEVMRIRRQVGRIYSERTGQTLSRVSRDMDRDQ--------FLSAREAKEYGLVD 190 Query: 226 VVG 228 V Sbjct: 191 QVA 193 >gi|253796892|gb|ACT35701.1| capsid protein [Wolbachia phage WO] gi|253796894|gb|ACT35702.1| capsid protein [Wolbachia phage WO] gi|253796896|gb|ACT35703.1| capsid protein [Wolbachia phage WO] gi|253796914|gb|ACT35712.1| capsid protein [Wolbachia phage WO] Length = 101 Score = 39.2 bits (89), Expect = 0.74, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P + ++++ +Q V Y F++L++ +R + +K G + G +A ++GL D Sbjct: 1 PHEPMTSESLESLQKEVGRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59 Query: 226 VV 227 + Sbjct: 60 GM 61 >gi|270292328|ref|ZP_06198539.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus sp. M143] gi|270278307|gb|EFA24153.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus sp. M143] Length = 196 Score = 39.2 bits (89), Expect = 0.74, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 58/192 (30%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + DS + + +++PGGS AG AI + +K Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + +K+ Sbjct: 87 QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 ++++ + ++ ++ W + Sbjct: 147 RK----------------------------TLEQILATNSGKSVEQIHADAERDYWMSAQ 178 Query: 217 EAKKVGLIDVVG 228 E + G ID + Sbjct: 179 ETLEYGFIDEIM 190 >gi|254243547|ref|ZP_04936869.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|126196925|gb|EAZ60988.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] Length = 443 Score = 39.2 bits (89), Expect = 0.74, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 61/209 (29%), Gaps = 27/209 (12%) Query: 33 DNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 S V +++ G I + L+ IER + D A +++ L +PGG + I +AI Sbjct: 22 AASGPVRVLSVDGAIGPASADYLVRGIERAAED-GAQLVVLELDTPGGLDASMRRIVKAI 80 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 + A + AA L Sbjct: 81 LA---------------SQVPVAGFVAPSGARAASAGTYILYACHIAAMAPGTNLGAATP 125 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSD 209 + P + + + M + ++R +++ R + + + Sbjct: 126 VR-------LGTPDKPAEKPPARDAEPMARKQVNDAAAYIRGLAQLRGRNVEWAERAVRE 178 Query: 210 GRIWTGAEAKKVGLID-VVGGQEEVWQSL 237 EA +ID ++ + L Sbjct: 179 AVSLAAHEAAAQKVIDLQARDLPDLLRQL 207 >gi|295662198|ref|XP_002791653.1| enoyl-CoA hydratase/isomerase family protein [Paracoccidioides brasiliensis Pb01] gi|226279779|gb|EEH35345.1| enoyl-CoA hydratase/isomerase family protein [Paracoccidioides brasiliensis Pb01] Length = 266 Score = 39.2 bits (89), Expect = 0.74, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 17/35 (48%) Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 + +G + G EA + G++D +G +E + Sbjct: 169 VLEGHRFGGKEALEHGIVDGLGDLDEALALIEKRK 203 >gi|217967716|ref|YP_002353222.1| protein of unknown function DUF114 [Dictyoglomus turgidum DSM 6724] gi|217336815|gb|ACK42608.1| protein of unknown function DUF114 [Dictyoglomus turgidum DSM 6724] Length = 280 Score = 39.2 bits (89), Expect = 0.74, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 62/183 (33%), Gaps = 21/183 (11%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+E++ I D ++ +PGG A E I A++ + V V Sbjct: 67 IEDSEEILRAIRLTPEDMPIDLIL---HTPGGLVLAAEQIAHALKNH--KGKVTVFVPHY 121 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 A S G I+ A++ I+ E +++G + L+ + K Sbjct: 122 AMSGGTFIALAADEIIMDENAVLGPVDPQLGEYPAASILNAINR----------KGADKV 171 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220 + + + F L + + + WT EA+K Sbjct: 172 EDKTLILGDVAEKAIRQVKESVFELLKDKMPEEKAKEIAEILSTGTWTHDYPITVEEAQK 231 Query: 221 VGL 223 +GL Sbjct: 232 LGL 234 >gi|198461900|ref|XP_001352265.2| GA18618 [Drosophila pseudoobscura pseudoobscura] gi|198142480|gb|EAL29303.2| GA18618 [Drosophila pseudoobscura pseudoobscura] Length = 253 Score = 39.2 bits (89), Expect = 0.74, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D S ++ ++ + ++ + + ++SPGG AG AI+ +Q VK Sbjct: 55 IICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPI 114 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + L + A + + I Sbjct: 115 ATWCVGQACSMGSLLLAAGAPGMRYS-------LPNARIMIHQPSGGAQGQATDILIHAE 167 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 +K + S A +++ T E Sbjct: 168 EIIKIKRQLTSIYVKHAKNSYEEMCQRMERDH----------------------FMTPDE 205 Query: 218 AKKVGLIDVV 227 AK +G+ID V Sbjct: 206 AKVLGIIDHV 215 >gi|307708900|ref|ZP_07645360.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus mitis SK564] gi|322376945|ref|ZP_08051438.1| Clp protease [Streptococcus sp. M334] gi|307620236|gb|EFN99352.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus mitis SK564] gi|321282752|gb|EFX59759.1| Clp protease [Streptococcus sp. M334] Length = 196 Score = 39.2 bits (89), Expect = 0.75, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 59/192 (30%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + DS + + +++PGGS AG AI + +K Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + + Sbjct: 87 QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + ++++E+ +K ++ W + Sbjct: 145 --------------------------KTRNTLEKILAENSGQSIEKVHADAERDNWMSAQ 178 Query: 217 EAKKVGLIDVVG 228 E + G ID + Sbjct: 179 ETLEYGFIDEIM 190 >gi|107099435|ref|ZP_01363353.1| hypothetical protein PaerPA_01000447 [Pseudomonas aeruginosa PACS2] Length = 441 Score = 39.2 bits (89), Expect = 0.75, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 63/208 (30%), Gaps = 25/208 (12%) Query: 33 DNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 S V +++ G I + L+ IER + D A +++ L +PGG + I +AI Sbjct: 20 AASGPVRVLSVDGAIGPASADYLVRGIERAAED-GAQLVVLELDTPGGLDASMRRIVKAI 78 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 + A + AA L Sbjct: 79 LA---------------SQVPVAGFVAPSGARAASAGTYILYACHIAAMAPGTNLG--AA 121 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 + + + AE P + +P A + + D RN + + + + Sbjct: 122 TPVRLGTPDKPAEKPPARDADPMARKQVNDAAAYIRGLAQLR---GRNAEWAE-RAVREA 177 Query: 211 RIWTGAEAKKVGLID-VVGGQEEVWQSL 237 EA +ID ++ + L Sbjct: 178 VSLAAHEAAAQKVIDLQARDLPDLLRQL 205 >gi|307637483|gb|ADN79933.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori 908] Length = 195 Score = 39.2 bits (89), Expect = 0.75, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 42/114 (36%), Gaps = 2/114 (1%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+I DS ++ ++ + +D + + ++SPGG +G +I+ + ++ Sbjct: 29 IVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 I + A L A + S + L ++ + Sbjct: 89 STICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNE 142 >gi|260780695|ref|YP_003227081.1| ATP-dependent Clp protease proteolytic subunit [Bryopsis hypnoides] gi|260176773|gb|ACX33782.1| ATP-dependent Clp protease proteolytic subunit [Bryopsis hypnoides] Length = 199 Score = 39.2 bits (89), Expect = 0.75, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 29/178 (16%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + +LI + ++ ++ A L + ++SPGGS G A++ + +K+ I + + Sbjct: 44 ANQLIGIMLYLNAEEKAKDLYIYINSPGGSVTCGIAVYDIMNYIKSDVTTICVGTAASMA 103 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 + L +A S + SE Sbjct: 104 SFILAGGCRGKRIAFPHSRIMIHQPEG---------------------GSQGQASEVLSE 142 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 Q + L SR++ D+ + EAKK GL+D + Sbjct: 143 SEEVMRIRRQVGQIYAERTGQTLSRISRDMDRDQ--------FLSAQEAKKYGLVDHL 192 >gi|146277488|ref|YP_001167647.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter sphaeroides ATCC 17025] gi|166214703|sp|A4WSH8|CLPP_RHOS5 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|145555729|gb|ABP70342.1| Endopeptidase Clp [Rhodobacter sphaeroides ATCC 17025] Length = 210 Score = 39.2 bits (89), Expect = 0.75, Method: Composition-based stats. Identities = 22/191 (11%), Positives = 56/191 (29%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D + ++ + ++ + + + ++SPGG +G +I+ +Q ++ + Sbjct: 38 IIFLSGPVHDGMSSLICAQLLFLEAENPSKEIAMYINSPGGVVTSGLSIYDTMQYIRPKV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + S V Y Sbjct: 98 STLVIGQAASMGSLLLTAGEKGMRFSLPNSRVMVHQPSGGYQGQ---------------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + + + + D L + Sbjct: 142 --------------ATDIMIHARETEKLKRRLNEIYVKHTGQDLDTVEAALERDNFMSAE 187 Query: 217 EAKKVGLIDVV 227 +AK GLID + Sbjct: 188 DAKAWGLIDEI 198 >gi|15837789|ref|NP_298477.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa 9a5c] gi|18203347|sp|Q9PE41|CLPP_XYLFA RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|9106157|gb|AAF83997.1|AE003953_1 ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa 9a5c] Length = 208 Score = 39.2 bits (89), Expect = 0.76, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 61/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D ++ ++ + ++ + + ++SPGG AG AI+ +Q +K Sbjct: 36 LIFLVGPIDDYMANLIVAQLLFLEAENPEKDINIYINSPGGVVTAGMAIYDTMQYIKPAV 95 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S AS A S V L + +D Sbjct: 96 STICVGQAASMGALLLASGASGKRYALPNSRVMIHQPLGGFQGQATDIDIHARE------ 149 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + ++++ + + Sbjct: 150 ------------------------ILALRARLNEILAKHTGQSLETIAHDTERDNFKSAV 185 Query: 217 EAKKVGLIDVVGG 229 +A+ GL+D V G Sbjct: 186 DAQAYGLVDQVLG 198 >gi|327482528|gb|AEA85838.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 458 Score = 39.2 bits (89), Expect = 0.77, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 64/219 (29%), Gaps = 26/219 (11%) Query: 30 HVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + V + + G I + ++ ++ D+ A +++ L +PGG + AI Sbjct: 19 QSASAADPVTLLRVDGAIGPASADYILRGLQHAR-DEGAQLVVLELDTPGGLDTSMRAII 77 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 +AI +A T ++ + V P Sbjct: 78 KAILASPIPVATYVTPS-------------GARAASAGTYMLYASHVAAMAPGTNLGAA- 123 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV---SESRNIPYD-K 203 + + P P E A + + + ++ R + Sbjct: 124 ---TPVQIGGMPGAPPEQPKGEREDDAKASGDALARKQVNDAAAYIRGLAQLRERNAEWA 180 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + + + +EA + +ID + +V L L Sbjct: 181 EQAVREAVSLSASEALNLKVIDYLA--RDVADLLRQLDG 217 >gi|15595648|ref|NP_249142.1| hypothetical protein PA0451 [Pseudomonas aeruginosa PAO1] gi|218889191|ref|YP_002438055.1| putative membrane-bound protease [Pseudomonas aeruginosa LESB58] gi|9946310|gb|AAG03840.1|AE004482_7 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|218769414|emb|CAW25174.1| putative membrane-bound protease [Pseudomonas aeruginosa LESB58] Length = 443 Score = 39.2 bits (89), Expect = 0.77, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 63/208 (30%), Gaps = 25/208 (12%) Query: 33 DNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 S V +++ G I + L+ IER + D A +++ L +PGG + I +AI Sbjct: 22 AASGPVRVLSVDGAIGPASADYLVRGIERAAED-GAQLVVLELDTPGGLDASMRRIVKAI 80 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 + A + AA L Sbjct: 81 LA---------------SQVPVAGFVAPSGARAASAGTYILYACHIAAMAPGTNLG--AA 123 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 + + + AE P + +P A + + D RN + + + + Sbjct: 124 TPVRLGTPDKPAEKPPARDADPMARKQVNDAAAYIRGLAQLR---GRNAEWAE-RAVREA 179 Query: 211 RIWTGAEAKKVGLID-VVGGQEEVWQSL 237 EA +ID ++ + L Sbjct: 180 VSLAAHEAAAQKVIDLQARDLPDLLRQL 207 >gi|317124504|ref|YP_004098616.1| ATP-dependent Clp protease proteolytic subunit ClpP [Intrasporangium calvum DSM 43043] gi|315588592|gb|ADU47889.1| ATP-dependent Clp protease proteolytic subunit ClpP [Intrasporangium calvum DSM 43043] Length = 217 Score = 39.2 bits (89), Expect = 0.77, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 60/186 (32%), Gaps = 27/186 (14%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++I ++ + D +++ ++SPGGS A AI+ +Q V+ + Sbjct: 55 ASADDIIAQLLVLESLDPDRDILMYINSPGGSFTAMTAIYDTMQFVRPDIQTFVIGQAAS 114 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + A A + + D + + ++ Sbjct: 115 AAAVLLGAGAPGKRFALPNARILIHQPALSGGDYGQASDIEIQANEVLRM---------- 164 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 ++D + V + +I + +AK+ GLID V Sbjct: 165 -------RTWLEDTLAHHTGRTSEQVR----------NDIERDKILSSDDAKEYGLIDEV 207 Query: 228 GGQEEV 233 + Sbjct: 208 LASRKA 213 >gi|46241469|gb|AAS82934.1| capsid protein [Wolbachia phage WO] Length = 136 Score = 39.2 bits (89), Expect = 0.78, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P + ++++ +Q VD Y F++L++ +R + +K G + G +A ++GL D Sbjct: 1 PHEPMTSESLESLQKEVDRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59 Query: 226 VV 227 + Sbjct: 60 GM 61 >gi|296386949|ref|ZP_06876448.1| putative membrane-bound protease [Pseudomonas aeruginosa PAb1] Length = 443 Score = 39.2 bits (89), Expect = 0.79, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 61/209 (29%), Gaps = 27/209 (12%) Query: 33 DNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 S V +++ G I + L+ IER + D A +++ L +PGG + I +AI Sbjct: 22 AASGPVRVLSVDGAIGPASADYLVRGIERAAED-GAQLVVLELDTPGGLDASMRRIVKAI 80 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 + A + AA L Sbjct: 81 LA---------------SQVPVAGFVAPSGARAASAGTYILYACHIAAMAPGTNLGAATP 125 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSD 209 + P + + + M + ++R +++ R + + + Sbjct: 126 VR-------LGTPDKPAEKPPARDAEPMARKQVNDAAAYIRGLAQLRGRNVEWAERAVRE 178 Query: 210 GRIWTGAEAKKVGLID-VVGGQEEVWQSL 237 EA +ID ++ + L Sbjct: 179 AVSLAAHEAAAQKVIDLQARDLPDLLRQL 207 >gi|289168250|ref|YP_003446519.1| ATP-dependent CLP protease proteolytic subunit [Streptococcus mitis B6] gi|288907817|emb|CBJ22657.1| ATP-dependent CLP protease proteolytic subunit [Streptococcus mitis B6] Length = 196 Score = 39.2 bits (89), Expect = 0.79, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 59/192 (30%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + DS + + +++PGGS AG AI + +K Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + +K+ Sbjct: 87 QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 ++++E+ +K ++ W + Sbjct: 147 RK----------------------------TLEKILAENSGQSIEKVHADAERDNWMSAQ 178 Query: 217 EAKKVGLIDVVG 228 E + G ID + Sbjct: 179 ETLEYGFIDEIM 190 >gi|238791540|ref|ZP_04635178.1| ATP-dependent Clp protease proteolytic subunit [Yersinia intermedia ATCC 29909] gi|238729156|gb|EEQ20672.1| ATP-dependent Clp protease proteolytic subunit [Yersinia intermedia ATCC 29909] Length = 647 Score = 39.2 bits (89), Expect = 0.79, Method: Composition-based stats. Identities = 21/211 (9%), Positives = 55/211 (26%), Gaps = 40/211 (18%) Query: 32 EDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + + A I I +I +++ ++ + + + + SPGG + G AI+ Sbjct: 2 KASGEKSADIYIYEEIGYWGVTARQFASSLKALGD---IDHINLRIHSPGGDVFEGIAIY 58 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 + K V + S+ I ++ + Sbjct: 59 NLLNTHPASKTVYID--------------------GLAASMASVIAMVGNPVIMPENAMM 98 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 + + ++ + ++ ++ V+ Sbjct: 99 MIHKPWGITGGDANDMRDYADLLDKVE------------GVLIPSYAKKTGKTPEELAVM 146 Query: 208 SDGRIW-TGAEAKKVGLIDVVGGQEEVWQSL 237 W T E + G D + + + Sbjct: 147 LGEETWLTAQECVEHGFADQLLPSMQAMARI 177 >gi|116873833|ref|YP_850614.1| ATP-dependent Clp protease proteolytic subunit [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742711|emb|CAK21835.1| ATP-dependent Clp protease proteolytic subunit [Listeria welshimeri serovar 6b str. SLCC5334] Length = 198 Score = 39.2 bits (89), Expect = 0.79, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + ++ ++ + D + + ++SPGGS AG AI+ + VK Sbjct: 29 IIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYDTMNFVKADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A+ A + + L ++ Sbjct: 89 QTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAAR------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + ++SE PY+ T Sbjct: 142 -----------------------HILKIKERMNTIMSEKTGQPYEVIARDTDRDNFMTAQ 178 Query: 217 EAKKVGLIDVV 227 EAK GLID + Sbjct: 179 EAKDYGLIDDI 189 >gi|300853555|ref|YP_003778539.1| phage related protease [Clostridium ljungdahlii DSM 13528] gi|300433670|gb|ADK13437.1| phage related protease [Clostridium ljungdahlii DSM 13528] Length = 279 Score = 39.2 bits (89), Expect = 0.79, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 62/202 (30%), Gaps = 39/202 (19%) Query: 43 IRGQIEDSQELIERI------ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 + G I DS + I E + L V ++S GG +AG+AI+ +++ Sbjct: 23 LYGDISDSTWWGDEITPKNFKEELDSLGDIKTLNVYINSGGGDVFAGQAIYSMLKRHSAT 82 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 V + S+ I + + + + S Sbjct: 83 VNVYVD--------------------GLAASIASIIAMAGDSVKMPKNAMLMVHNPWSYA 122 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215 K +++ + + + + + + L D W T Sbjct: 123 MGNAKDFRKLADDLDK------------VRESMISVYEDKTGMEKESIVELLDAETWMTA 170 Query: 216 AEAKKVGLIDVVGGQEEVWQSL 237 EA + G D + +++V SL Sbjct: 171 EEAVEFGFADEIEEEKQVAASL 192 >gi|239907453|ref|YP_002954194.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio magneticus RS-1] gi|259585949|sp|C4XH03|CLPP_DESMR RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|239797319|dbj|BAH76308.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio magneticus RS-1] Length = 202 Score = 39.2 bits (89), Expect = 0.79, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 54/185 (29%), Gaps = 31/185 (16%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 + ++ + +D + + ++SPGG AG AI+ +Q V + + A Sbjct: 44 ICAQLLFLESEDPEKEIFMYINSPGGVVSAGLAIYDTMQYVMPPVSTLCLGQAASMGALL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A+ + A S + Y ++ + Sbjct: 104 LCAGATGMRYALPHSRIMIHQPSGGYQGQATDIEIHAKETR------------------- 144 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231 + ++++ ++ + EA GLID V Sbjct: 145 -----------RTRETLNEIMAKHTGQSMERIQVDTERDNFMSAEEAVAYGLIDKVLTSR 193 Query: 232 EVWQS 236 E + Sbjct: 194 ERLEK 198 >gi|228476630|ref|ZP_04061312.1| Clp protease [Streptococcus salivarius SK126] gi|228251825|gb|EEK10890.1| Clp protease [Streptococcus salivarius SK126] Length = 196 Score = 39.2 bits (89), Expect = 0.79, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 2/155 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 27 IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S + + D + +K+ Sbjct: 87 QTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + P + D+ L Sbjct: 147 RNNLEQILADNSGQPIEKVHVDAERDNWMSAQETL 181 >gi|148888425|gb|ABR15759.1| putative capsid protein [Wolbachia phage WO] Length = 136 Score = 39.2 bits (89), Expect = 0.79, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P + +++ +Q VD Y F++L++ +R + +K G + G +A ++GL D Sbjct: 1 PHEPMTSESLGSLQKEVDRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59 Query: 226 VV 227 + Sbjct: 60 GM 61 >gi|119953393|ref|YP_945602.1| ATP-dependent Clp protease proteolytic subunit [Borrelia turicatae 91E135] gi|119862164|gb|AAX17932.1| ATP-dependent Clp protease proteolytic subunit [Borrelia turicatae 91E135] Length = 199 Score = 39.2 bits (89), Expect = 0.79, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + +I ++ + +DS + V ++SPGGS AG AI+ +Q +K Sbjct: 35 IIFLSGEINDVRADTVIAQLLFLESEDSKKDIYVYINSPGGSITAGLAIYDTMQYIKPDV 94 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 I + +A L A + S + Sbjct: 95 RTICIGQAASMAAFLLAGGAIGKRESLSYSRIMIHQPWG 133 >gi|46241459|gb|AAS82929.1| capsid protein [Wolbachia phage WO] Length = 136 Score = 39.2 bits (89), Expect = 0.79, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P + ++++ +Q V Y F++L++ +R + +K G + G +A ++GL D Sbjct: 1 PHEPMTSESLESLQKEVGRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59 Query: 226 VV 227 + Sbjct: 60 GM 61 >gi|167464584|ref|ZP_02329673.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus larvae subsp. larvae BRL-230010] Length = 196 Score = 39.2 bits (89), Expect = 0.80, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 65/197 (32%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I I+D +I ++ +S D+ + + ++SPGGS AG I+ +Q +K Sbjct: 29 IIFIGSAIDDDVVNLVIAQLLFLSAQDADKDIHLYINSPGGSVTAGLGIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A S V L V+ + + + Sbjct: 89 STICVGMAASMGSLLLTAGAKGKRFALPNSEVMIHQPLG---GVRGQAADIKIHADWILK 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-IWTGA 216 + K YDK +D + Sbjct: 146 TRKKLNEIYVH---------------------------HTGQTYDKIDKDTDRDNFLSAL 178 Query: 217 EAKKVGLIDVVGGQEEV 233 +AK+ GLID V + ++ Sbjct: 179 DAKEYGLIDEVITRSDL 195 >gi|187918471|ref|YP_001884034.1| ATP-dependent Clp protease proteolytic subunit [Borrelia hermsii DAH] gi|119861319|gb|AAX17114.1| ATP-dependent Clp protease proteolytic subunit [Borrelia hermsii DAH] Length = 199 Score = 39.2 bits (89), Expect = 0.80, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + +I ++ + +DS + V ++SPGGS +G AI+ +Q +K Sbjct: 35 IIFLSGEINDIRADTVIAQLLFLESEDSKKDIYVYINSPGGSITSGLAIYDTMQYIKPDV 94 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 I + +A L A + S + Sbjct: 95 RTICIGQAASMAAFLLAGGAIGKRESLSYSRIMIHQPWG 133 >gi|289548353|ref|YP_003473341.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermocrinis albus DSM 14484] gi|289181970|gb|ADC89214.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermocrinis albus DSM 14484] Length = 199 Score = 39.2 bits (89), Expect = 0.81, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 58/176 (32%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + D + + ++SPGGS AG AI+ +Q +K I + +A Sbjct: 49 IVAQLLFLEAQDPEKDIYMYINSPGGSVTAGMAIYDTMQYIKPDVVTICIGQAASMAAVL 108 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A + S + + + + + +K +E+ Sbjct: 109 LAAGAKGKRYSLPHSRIMIHQPMGGISG--------QATDIIIHAEEIKRIKHMLNEI-- 158 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227 +++ P K + + EA + G++D V Sbjct: 159 --------------------IAKHTGQPLSKVEQDVERDYFMSAYEAMEYGIVDKV 194 >gi|86607602|ref|YP_476364.1| S49 family peptidase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556144|gb|ABD01101.1| peptidase S49 (protease IV) family, nonpeptidase-like protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 289 Score = 38.8 bits (88), Expect = 0.81, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 69/186 (37%), Gaps = 22/186 (11%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS++++ I + ++ +PGG A E I RA+ + + V V Sbjct: 67 IEDSEQVLRAIRLTPPNTPIDLIL---HTPGGLVLATEQIARALIRHPAK--VTVFVPHY 121 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 A S G +++ A++ IV +++G + L + V P+ Sbjct: 122 AMSGGTMLALAADEIVMDANAVLGPVDPQLGGYAAASIL-------QVVADKPIAEIDDQ 174 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL---------VLSDGRIWTGAE 217 + A + MQ V + V R I ++ ++ T E Sbjct: 175 TLILADLARKAMQQVQNFVRDLLKDDV-PKRKIAPERIEPLIQYLTSGQVTHDYPITAEE 233 Query: 218 AKKVGL 223 A+++GL Sbjct: 234 AQRLGL 239 >gi|330506735|ref|YP_004383163.1| hypothetical protein MCON_0500 [Methanosaeta concilii GP-6] gi|328927543|gb|AEB67345.1| Protein of unknown function (DUF114) [Methanosaeta concilii GP-6] Length = 293 Score = 38.8 bits (88), Expect = 0.82, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 6/176 (3%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS++++ I R +D ++ +PGG A A I A++ +K VI + M Sbjct: 82 IEDSEKVLRAIRRAQKDIPIDIIL---HTPGGLALAATQIAMALKSHPAKKTVIVPHYAM 138 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + G LI+ A++ I+ + + +G + L + K M + Sbjct: 139 SG--GTLIAFAADQIIMDQHAALGPVDPQLGDAQGAYPATSLLAVAEKKKIDEMDDKTLV 196 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKV 221 + E KA+ M++++ S+ I + + + +AK + Sbjct: 197 YVEEARKALAQMRELLQKILEGKCSDSSKLDVIINEFVSGKYTHDHPFMAEDAKAL 252 >gi|52145330|gb|AAU29369.1| putative capsid protein [Wolbachia phage WO] gi|52145332|gb|AAU29370.1| putative capsid protein [Wolbachia phage WO] gi|284927695|gb|ADC29570.1| putative capsid protein [Wolbachia phage WO] gi|284927697|gb|ADC29571.1| putative capsid protein [Wolbachia phage WO] gi|284927699|gb|ADC29572.1| putative capsid protein [Wolbachia phage WO] gi|284927721|gb|ADC29583.1| putative capsid protein [Wolbachia phage WO] gi|284927723|gb|ADC29584.1| putative capsid protein [Wolbachia phage WO] Length = 115 Score = 38.8 bits (88), Expect = 0.83, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y FV+L++ +RN+ G + G +A ++GL D V E + + V + Sbjct: 13 YEMFVQLIARNRNLSIQAIKSTEAGLYF-GEKAVEIGLADGVTTFFEFINNHKSRSVSMT 71 Query: 246 IRKIKDWNPPKNYWF 260 ++ + N + Sbjct: 72 TDELIEENYRREILE 86 >gi|89893323|ref|YP_516810.1| hypothetical protein DSY0577 [Desulfitobacterium hafniense Y51] gi|219666595|ref|YP_002457030.1| ATP-dependent Clp protease proteolytic subunit [Desulfitobacterium hafniense DCB-2] gi|116243100|sp|Q250C6|CLPP1_DESHY RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; AltName: Full=Endopeptidase Clp 1 gi|89332771|dbj|BAE82366.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536855|gb|ACL18594.1| Endopeptidase Clp [Desulfitobacterium hafniense DCB-2] Length = 193 Score = 38.8 bits (88), Expect = 0.83, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 31/191 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G + + +I ++ + D + ++SPGGS G AI + +K Sbjct: 30 VVMLNGMVTNESASLIIAQMLFLESADCDKDIHFYINSPGGSVTDGLAIMDTMNYIKCDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I+ +A++ L + A A S VL P + L IK Sbjct: 90 STISIGQSGSAASLLLAAGAKGKRFALANS-----EVLIHQPSISGGLQGQTTDIKI--- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 D + + S P +K + + T Sbjct: 142 --------------------HSDWLTKTKEKLNETYSRLTGQPLEKIQKDMERDYYMTAG 181 Query: 217 EAKKVGLIDVV 227 +A+ GLID + Sbjct: 182 QAQDYGLIDKI 192 >gi|14591292|ref|NP_143370.1| nfeD protein [Pyrococcus horikoshii OT3] gi|3257935|dbj|BAA30618.1| 441aa long hypothetical nfeD protein [Pyrococcus horikoshii OT3] Length = 441 Score = 38.8 bits (88), Expect = 0.83, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 6/93 (6%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSS 75 + L+++ + + V I+GQI + I +D +A A+I+ L + Sbjct: 4 ILLSMIVLIFLASPILAKNIVYVAQIKGQITSYTYDQFDRYITIAEQD-NAEAIIIELDT 62 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 PGG +A+ +Q+++ K + Sbjct: 63 PGG---RADAMMNIVQRIQQSKIPVIIYVYPPG 92 >gi|212704616|ref|ZP_03312744.1| hypothetical protein DESPIG_02679 [Desulfovibrio piger ATCC 29098] gi|212672015|gb|EEB32498.1| hypothetical protein DESPIG_02679 [Desulfovibrio piger ATCC 29098] Length = 200 Score = 38.8 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 55/176 (31%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 + ++ + D + + ++SPGGS AG AI+ ++ + + + A Sbjct: 44 VCAQLLFLESQDPEKEINLYINSPGGSVTAGLAIYDTMRYITAPVSTVCMGRAASMGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + + A S + L + +D + +K Sbjct: 104 LAAGQKGMRYALPNSQIMIHQPLGGFQGQATDVDIHAREMLRIK---------------- 147 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227 +++E+ YD+ T +A + G+ID V Sbjct: 148 --------------ERLNTMLAENTGKSYDEVVRATERDNFLTPEQALEFGIIDRV 189 >gi|297626027|ref|YP_003687790.1| ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp 2) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921792|emb|CBL56352.1| ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp 2) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 229 Score = 38.8 bits (88), Expect = 0.85, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 64/194 (32%), Gaps = 30/194 (15%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I D ++ ++ + D + + ++SPGGS A AI+ +Q +K Sbjct: 59 IIFLGAPITDDVANAVMAQLLSLQSMDVDRPISIYINSPGGSFTALTAIYDTMQYLKPAV 118 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I +A+A L + A +A S + L + K + Sbjct: 119 QTICLGQAASAAAVLLAAGAKGQRLALPNSRILIHQPAISGEGSYGQSSDLEIQAKEI-- 176 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 ++++++ P ++ + + T Sbjct: 177 -------------------------LRIRSLMEQMLADATGQPVERINRDVERDKYLTAE 211 Query: 217 EAKKVGLIDVVGGQ 230 EAK+ GLID + Sbjct: 212 EAKEYGLIDDILTS 225 >gi|125623498|ref|YP_001031981.1| ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis subsp. cremoris MG1363] gi|18203672|sp|Q9ZAB0|CLPP_LACLM RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|11528583|gb|AAD01866.2| protease [Lactococcus lactis subsp. cremoris MG1363] gi|124492306|emb|CAL97240.1| ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis subsp. cremoris MG1363] gi|300070250|gb|ADJ59650.1| ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis subsp. cremoris NZ9000] Length = 199 Score = 38.8 bits (88), Expect = 0.85, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 47/155 (30%), Gaps = 2/155 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 30 IIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S + + D V+ + +K+ Sbjct: 90 QTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGQGTQQTDMAIVAEQLLKT 149 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + D L Sbjct: 150 RKRLEQILADNSNRSLEQIHKDAERDHWMDAKETL 184 >gi|229167033|ref|ZP_04294778.1| Integrase [Bacillus cereus AH621] gi|228616444|gb|EEK73524.1| Integrase [Bacillus cereus AH621] Length = 293 Score = 38.8 bits (88), Expect = 0.85, Method: Composition-based stats. Identities = 11/113 (9%), Positives = 31/113 (27%), Gaps = 2/113 (1%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 +++ +++ + +++ GS Y + ++K + + + + + Sbjct: 181 VLDTLKKAKEKRNVKGILLHSD--QGSQYTSRQYNQLLKKYQMKASMSRRGNCWDNACME 238 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 S + V F + K SP K Sbjct: 239 NFFSHFKAECFHLYSFRKANEVKLAVRKYMHFYNHQRFQKKLNNLSPYKYRTQ 291 >gi|46241449|gb|AAS82924.1| capsid protein [Wolbachia phage WO] gi|46241463|gb|AAS82931.1| capsid protein [Wolbachia phage WO] Length = 136 Score = 38.8 bits (88), Expect = 0.85, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P + ++++ +Q V Y F++L++ +R + +K G + G +A ++GL D Sbjct: 1 PHEPMTSESLESLQKEVGRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAAEIGLAD 59 Query: 226 VV 227 + Sbjct: 60 GM 61 >gi|28198386|ref|NP_778700.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa Temecula1] gi|182681028|ref|YP_001829188.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa M23] gi|32129456|sp|Q87E51|CLPP_XYLFT RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|226706560|sp|B2I8K3|CLPP_XYLF2 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|28056456|gb|AAO28349.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa Temecula1] gi|182631138|gb|ACB91914.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Xylella fastidiosa M23] gi|307579496|gb|ADN63465.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa subsp. fastidiosa GB514] Length = 208 Score = 38.8 bits (88), Expect = 0.85, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D ++ ++ + ++ + + ++SPGG AG AI+ +Q +K Sbjct: 36 LIFLVGPIDDYMANLIVAQLLFLEAENPEKDINIYINSPGGVVTAGMAIYDTMQYIKPAV 95 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S AS A S V L + +D Sbjct: 96 STICVGQAASMGALLLASGASGKRYALPNSRVMIHQPLGGFQGQATDIDIHARE------ 149 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + ++++ + + Sbjct: 150 ------------------------ILALRARLNEILAKHTGQSLETIAHDTERDNFKSAV 185 Query: 217 EAKKVGLIDVVGGQEE 232 +A+ GL+D V GQ + Sbjct: 186 DAQAYGLVDQVFGQRQ 201 >gi|313114091|ref|ZP_07799643.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Faecalibacterium cf. prausnitzii KLE1255] gi|310623500|gb|EFQ06903.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Faecalibacterium cf. prausnitzii KLE1255] Length = 198 Score = 38.8 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 55/181 (30%), Gaps = 26/181 (14%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++ ++ + D + + ++SPGGS AG AI +Q +K I + Sbjct: 39 TSASLVVAQLLYLEGQDPDKDISLYINSPGGSISAGMAIHDTMQYIKCDVSTICMGMAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L S A S + L + I Sbjct: 99 MGAFLLASGTKGKRFALPNSEILIHQPLIGGQGGGLSGQTTDIKIH-------------- 144 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226 + + R++SE P +K + +AK+ GLID Sbjct: 145 -----------AEHMVYIRDKMNRMLSEYTGQPLEKIQLDTERDNYMSALQAKEYGLIDE 193 Query: 227 V 227 V Sbjct: 194 V 194 >gi|288961083|ref|YP_003451422.1| 2-nitropropane dioxygenase [Azospirillum sp. B510] gi|288913391|dbj|BAI74878.1| 2-nitropropane dioxygenase [Azospirillum sp. B510] Length = 334 Score = 38.8 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 19/177 (10%) Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 DD LI+ I A++ ++ PVI + Sbjct: 163 DDDIGGLIL--------------IPAAVKALR--IPVIASGGIGDGRGMAAALVLGAEGI 206 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 T + + + + + + ++ + V M + Sbjct: 207 NMGTRFCATKEAPIHDNIKMAMVQRTERDTNLILRTLGNTGRCLKNPISDEVVTMERREG 266 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + LV+ +R +T ++DG IW G VGLID + EE+ + + Sbjct: 267 GVRFEEIHHLVAGARGRKALETGDVNDGLIWGGQ---VVGLIDDIPSCEELLERMVG 320 >gi|116074798|ref|ZP_01472059.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. RS9916] gi|116068020|gb|EAU73773.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. RS9916] Length = 196 Score = 38.8 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 59/184 (32%), Gaps = 31/184 (16%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + ++ ++ + +D + + ++SPGGS Y G IF +Q +K + + Sbjct: 38 SANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASM 97 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 A L + A + S + L + + + K Sbjct: 98 GAFLLCAGAKGKRSSLRHSRIMIHQPLG---GASGQASDIRIQADEILFLKDK------- 147 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 R ++E P +K V +D + + EA GLID V Sbjct: 148 --------------------LNRELAERSGQPLEKMQVDTDRDFFMSPDEAVTYGLIDTV 187 Query: 228 GGQE 231 + Sbjct: 188 IDRR 191 >gi|83644345|ref|YP_432780.1| membrane-bound serine protease (ClpP class) [Hahella chejuensis KCTC 2396] gi|83632388|gb|ABC28355.1| Membrane-bound serine protease (ClpP class) [Hahella chejuensis KCTC 2396] Length = 461 Score = 38.8 bits (88), Expect = 0.87, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 66/227 (29%), Gaps = 19/227 (8%) Query: 26 SWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAG 83 S + + P V + I+G I + + +E + A+ ++ L +PGG + Sbjct: 34 SNVNASARHPPQVWTLDIQGAIGPASADLFMRALEEANE-AGASLFLLRLDTPGGLDKSM 92 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + +AI A++ S+ I ++ + + P Sbjct: 93 RDMIQAILASSTPVAAYVYPKGARAASAGTYILFSSHIA----AMAPATNLGAATPISIT 148 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 + K + ++ + + L Sbjct: 149 APSSSPSKPDTDAEGDEKGLSTL-----------EHKQINDAVAYIQGLAKLRGRNTEWA 197 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSLYALGVDQSIRKI 249 + D + EA ++ ++D++ E++ L V + Sbjct: 198 EQAVRDAASLSAEEALQMNVVDMMADSTEQLLAQLEGREVKLDNGAV 244 >gi|229828304|ref|ZP_04454373.1| hypothetical protein GCWU000342_00362 [Shuttleworthia satelles DSM 14600] gi|229792898|gb|EEP29012.1| hypothetical protein GCWU000342_00362 [Shuttleworthia satelles DSM 14600] Length = 190 Score = 38.8 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 54/178 (30%), Gaps = 31/178 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGG G AI+ + +K I + A Sbjct: 41 IVAQLLFLESEDPNKDIHLYINSPGGVVTCGMAIYDTMNYIKPDVSTICIGMAASMGAFL 100 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L A A + + K ++ ++ +S+ + K Sbjct: 101 LAGGAKGKRYALPNAEIMIHQPSG---GAKGQATEIEIAAESILKTKRKMNQIL------ 151 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGG 229 +++ Y++ EA + G++D + Sbjct: 152 ---------------------ADNTGKTYEQVAADTERDHYLDAKEALEYGIVDQIID 188 >gi|298674533|ref|YP_003726283.1| hypothetical protein Metev_0576 [Methanohalobium evestigatum Z-7303] gi|298287521|gb|ADI73487.1| protein of unknown function DUF114 [Methanohalobium evestigatum Z-7303] Length = 276 Score = 38.8 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 12/181 (6%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IED++ ++ I + + + +PGG + I RA++ N + H Sbjct: 76 IEDAESILRGIRNTANNRPIDII---AHTPGGQVHPSIQIARALKNH-NGHTRVMIPHYS 131 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + A II+ + + L ++ S Sbjct: 132 MSGGTIIALAADEIIMDDDAVIGPIDPQLGDLIRGTYPAPSWINAV----SQKGANAADT 187 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLV--SESRNIPYDKTL--VLSDGRIWTGAEAKKVG 222 ++ + + M+ + + + E RN +K + + + +EA +G Sbjct: 188 TIVLSDISEKTMKLMRKVANELLEGKIEDEEKRNYVVEKLVSGEMVHITPISASEAADIG 247 Query: 223 L 223 L Sbjct: 248 L 248 >gi|284161665|ref|YP_003400288.1| hypothetical protein Arcpr_0550 [Archaeoglobus profundus DSM 5631] gi|284011662|gb|ADB57615.1| protein of unknown function DUF114 [Archaeoglobus profundus DSM 5631] Length = 285 Score = 38.8 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 58/177 (32%), Gaps = 9/177 (5%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS++++ I +D +I +PGG A I +A++ + VI + M Sbjct: 76 IEDSEQVLRAIRMTPKDQPIDLII---HTPGGLVLAATQIAKALKNHPAKTTVIVPHYAM 132 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + A II+ L L YP K V + Sbjct: 133 -SGGTLIALAADEIIMDPNAVLGPVDPQLMNYPAPSIINAVKKKDPKDVDDQTLILADIA 191 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 +N + + + D R V+ + T AK++GL Sbjct: 192 EKAINQVRQFVYELLKDKMEDEKAREVA-----RILTEGRWTHDYPITVEVAKELGL 243 >gi|94987236|ref|YP_595169.1| protease subunit of ATP-dependent Clp proteases [Lawsonia intracellularis PHE/MN1-00] gi|116243147|sp|Q1MQ79|CLPP_LAWIP RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|94731485|emb|CAJ54848.1| Protease subunit of ATP-dependent Clp proteases [Lawsonia intracellularis PHE/MN1-00] Length = 209 Score = 38.8 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 50/176 (28%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 + ++ + D + + ++SPGGS AG AI+ + + + + A Sbjct: 49 ICAQLLFLESQDPEKEIYLYINSPGGSVTAGLAIYDTMNYITPNVATVCMGRAASMGALL 108 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + N+ A S V L Y +D Sbjct: 109 LAAGEKNMRYALPNSQVMIHQPLGGYQGQATDIDIHARE--------------------- 147 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227 + ++ E +K T +AK GLID V Sbjct: 148 ---------ILRMRQRLNEILMEQTGQSLEKVAQDTERDYFMTAEDAKAYGLIDKV 194 >gi|254224908|ref|ZP_04918523.1| Protease subunit of ATP-dependent Clp proteases [Vibrio cholerae V51] gi|125622596|gb|EAZ50915.1| Protease subunit of ATP-dependent Clp proteases [Vibrio cholerae V51] Length = 292 Score = 38.8 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 82/237 (34%), Gaps = 38/237 (16%) Query: 41 IAIRGQIEDS----QEL-IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95 I I G I + + + ++RI+ R + V ++SPGG + G AI +Q+ + Sbjct: 43 ITIYGVIGEDWWTGEGVTVKRIDAALRSIGDKPVTVYINSPGGDMWEGIAIHNRLQEH-S 101 Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 +K I + A++A + + + +A + L+ Sbjct: 102 QKVTIKVIGIAASAASIIAMASDDRQIATSSFLMI------------------------- 136 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT- 214 N ++ M D ++ + +++ P ++ + D + Sbjct: 137 ------HNCWTCICGNRHFMREMADTMEEFDMAMADVYADTSGQPVEEMSRMMDAESYIR 190 Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSL 271 G +A ++GL + EV ++ + K D K + S+L Sbjct: 191 GKKAVELGLCTSIIDPSEVKETNDEESKQANALKAMDMALAKTGMPRAKRRELFSNL 247 >gi|268611147|ref|ZP_06144874.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative [Ruminococcus flavefaciens FD-1] Length = 306 Score = 38.8 bits (88), Expect = 0.89, Method: Composition-based stats. Identities = 24/198 (12%), Positives = 56/198 (28%), Gaps = 47/198 (23%) Query: 40 RIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 + + G I+ Q+ + + + D L + ++SPGG+ +A I+ I Sbjct: 16 VLRLEGPIDSDSFWGDEITPQDFRDELY--AEDGD---LTLWINSPGGNVFAAAEIYTMI 70 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 + + V I + S I + + P + Sbjct: 71 RDYPHNVTV--------------------RIASIAASAASVIAMAGNTVQMSPTALLMIN 110 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 ++ K + +N + + + ++ L Sbjct: 111 DPSTIAFGNAKDMEKAIATLNE------------VKESIINAYAAKTGLSRNRISKLMSD 158 Query: 211 RIW-TGAEAKKVGLIDVV 227 W +A ++G D + Sbjct: 159 ETWINAKKAVELGFADEI 176 >gi|210621780|ref|ZP_03292809.1| hypothetical protein CLOHIR_00754 [Clostridium hiranonis DSM 13275] gi|210154544|gb|EEA85550.1| hypothetical protein CLOHIR_00754 [Clostridium hiranonis DSM 13275] Length = 195 Score = 38.8 bits (88), Expect = 0.89, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 53/178 (29%), Gaps = 31/178 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGGS AG AI+ + +K I + A Sbjct: 44 IVAQLLFLEAEDPDKDIHLYINSPGGSITAGMAIYDTMNYIKPDVSTICIGMAASMGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L S A A S + L ++ Sbjct: 104 LSSGAKGKRYALPNSEIMIHQPLGGAQGQATEIEIRAKR--------------------- 142 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGG 229 + +++SE+ P +K EA GLID V Sbjct: 143 ---------IIRMKEKLNQILSENTGQPLEKIMADTERDNFMEADEALAYGLIDEVIT 191 >gi|46198490|ref|YP_004157.1| enoyl-CoA hydratase [Thermus thermophilus HB27] gi|46196112|gb|AAS80530.1| enoyl-CoA hydratase [Thermus thermophilus HB27] Length = 253 Score = 38.8 bits (88), Expect = 0.89, Method: Composition-based stats. Identities = 30/246 (12%), Positives = 68/246 (27%), Gaps = 35/246 (14%) Query: 31 VEDNSPHVARIAIRGQ----IEDSQ---ELIERIERISRDDSATALIVSLSSPGGSAYAG 83 V+ HVA + + + L++ ++ + D A+++ Sbjct: 2 VQVEKGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVLL------------ 49 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + A + + SL+ ++ YP Sbjct: 50 -----------TGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTV 98 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 V+ +V A ++ +A +V V ++ Sbjct: 99 AA----VNGPAVAGGAGLATACDLVVMDEEARLGYTEVKIGFVAALVSVILVRAVGEKAA 154 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 +L GR+ EAK +GL++ + + + AL + + K L Sbjct: 155 KDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAVALAEEVAKNAPTSLRLTKELLLA-L 213 Query: 264 KNLSIS 269 + + Sbjct: 214 PGMGLE 219 >gi|306825611|ref|ZP_07458950.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431972|gb|EFM34949.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 196 Score = 38.8 bits (88), Expect = 0.90, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 2/155 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + DS + + +++PGGS AG AI + +K Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + +K+ Sbjct: 87 QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + + D L Sbjct: 147 RKTLEQILADNSGKTVEQIHVDAERDYWMSAQETL 181 >gi|225856422|ref|YP_002737933.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae P1031] gi|254763806|sp|C1CJJ5|CLPP_STRZP RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|225724460|gb|ACO20312.1| Clp protease [Streptococcus pneumoniae P1031] Length = 196 Score = 38.8 bits (88), Expect = 0.90, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 2/155 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + DS + + +++PGGS AG AI + +K Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + +K+ Sbjct: 87 QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + D+ L Sbjct: 147 RNTLEKILAENSGQSMEKVHADAERDNWMSAHETL 181 >gi|88812667|ref|ZP_01127914.1| probable transmembrane protein [Nitrococcus mobilis Nb-231] gi|88790083|gb|EAR21203.1| probable transmembrane protein [Nitrococcus mobilis Nb-231] Length = 453 Score = 38.8 bits (88), Expect = 0.90, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 70/229 (30%), Gaps = 12/229 (5%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSL 73 ++ + + ++ ++ + I G I S + + R A +I+ + Sbjct: 4 IVLASLLWLLTVATAAVASNERALLLRIDGAIGPAISDHITTELTRAEH-QGAALVILEM 62 Query: 74 SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG 133 +PGG + I +AI A++ + ++ Sbjct: 63 DTPGGLDTSMRDIIQAILSSSVPVVSYVAPSGSRAASAGTYIL----YASHVAAMAPGTN 118 Query: 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 + P + P K + +EV + V D+ + Sbjct: 119 IGAATPVRIGGMPGAPSPRP--DKEPDKGDREEGNEVTSATPMERKMVNDAVAYIRSLAE 176 Query: 194 SESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 RN + + + + +A ++ +IDV+ + V Q L + Sbjct: 177 LRGRNADWAE-KAVREAASLPAHQALEMKVIDVMA--DNVAQLLRKIDG 222 >gi|218891274|ref|YP_002440141.1| ClpP protease [Pseudomonas aeruginosa LESB58] gi|218771500|emb|CAW27267.1| ClpP protease [Pseudomonas aeruginosa LESB58] Length = 296 Score = 38.8 bits (88), Expect = 0.91, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 78/251 (31%), Gaps = 41/251 (16%) Query: 45 GQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH 104 G+ ++ + + I D T V+++SPGG + G AI+ +++ + V + Sbjct: 59 GEGVTAKRIAGALRSIGSDIDVT---VNINSPGGDVFEGLAIYNLLREH--KGKVTVNII 113 Query: 105 EMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 +AASA I+ A + I + + + L ++ Sbjct: 114 GLAASAASFIAMAGDEIRIGRAAFLMIHNAWLIAMGNRNDLREIAD-------------- 159 Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-AEAKKVGL 223 ++ + ++ I D + D W G EA G Sbjct: 160 ----------------WLEPFDMTLADIYAQRTGIDIDDIVKQMDAETWIGGREAVDKGW 203 Query: 224 IDVVGGQEEVW-----QSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278 D +E+ +S L + + P++ + + S L Sbjct: 204 ADAFLESDEISSAPSNRSEAILAKRRMDAALARSGMPRSQRNELINDFKTSMLGAAGGGG 263 Query: 279 MKQTKVQGLWA 289 T + G A Sbjct: 264 DTPTDMPGAVA 274 >gi|183179518|ref|ZP_02957729.1| Clp protease [Vibrio cholerae MZO-3] gi|183012929|gb|EDT88229.1| Clp protease [Vibrio cholerae MZO-3] Length = 156 Score = 38.8 bits (88), Expect = 0.91, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 + + A L A S V L Sbjct: 102 STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLG 140 >gi|148242503|ref|YP_001227660.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. RCC307] gi|147850813|emb|CAK28307.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp. RCC307] Length = 196 Score = 38.8 bits (88), Expect = 0.91, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 60/182 (32%), Gaps = 31/182 (17%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + ++ ++ + +D + + ++SPGGS Y G IF +Q VK + + Sbjct: 38 SANRIVAQLLFLEAEDPDKDIFLYINSPGGSVYDGLGIFDTMQHVKPDVQTVCVGLAASM 97 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 A L + A + + S + L Sbjct: 98 GAFLLAAGAPGKRSSLQHSRIMIHQPLGGAQGQ--------------------------- 130 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 +++ D + +++ P D+ +D + + AEA + GLID V Sbjct: 131 ---ASDIRIQADEILFLKKRLNEELAQRTGQPLDRIQKDTDRDFFMSPAEAAEYGLIDKV 187 Query: 228 GG 229 Sbjct: 188 ID 189 >gi|284044102|ref|YP_003394442.1| ATP-dependent Clp protease proteolytic subunit ClpP [Conexibacter woesei DSM 14684] gi|283948323|gb|ADB51067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Conexibacter woesei DSM 14684] Length = 194 Score = 38.8 bits (88), Expect = 0.91, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGGS YAG AI+ +Q +K I M+ A Sbjct: 45 IVAQLLHLESEDPDKDISIYINSPGGSVYAGLAIYDTMQFIKPDVQTICVGIAMSMGALL 104 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L A +A + + V + ++ I + Sbjct: 105 LSGGARGKRMALPNAKILIHQVSSSFQGQATDIEIHAREIIDI----------------- 147 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 +++ P D+ ++ + + EAK G+ID V Sbjct: 148 -------------RRRLDEIIALHSGKPVDEVKKDTERDYFMSSEEAKDYGIIDRV 190 >gi|306829178|ref|ZP_07462368.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus mitis ATCC 6249] gi|304428264|gb|EFM31354.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus mitis ATCC 6249] Length = 196 Score = 38.8 bits (88), Expect = 0.92, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 59/192 (30%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + DS + + +++PGGS AG AI + +K Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + +K+ Sbjct: 87 QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 ++++++ ++ ++ W + Sbjct: 147 RK----------------------------TLEQILADNSGKSVEQIHADAERDYWMSAQ 178 Query: 217 EAKKVGLIDVVG 228 E + G ID + Sbjct: 179 ETLEYGFIDEIM 190 >gi|302390303|ref|YP_003826124.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermosediminibacter oceani DSM 16646] gi|302200931|gb|ADL08501.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermosediminibacter oceani DSM 16646] Length = 200 Score = 38.8 bits (88), Expect = 0.92, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 57/198 (28%), Gaps = 35/198 (17%) Query: 35 SPHVARI--AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 + I I I +I ++ + +D + + ++SPGGS AG AI+ +Q Sbjct: 26 KDRIVFIGTPIDDSIASL--VIAQLLFLESEDPDKDIYLYINSPGGSVTAGLAIYDTMQY 83 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 +K I + A L A +A S + ++ Sbjct: 84 IKPDVSTICIGMAASMGAVLLAGGAPGKRLALPNSRIMIHQPWGGVQGRALDIETHAKE- 142 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGR 211 + ++ + P ++ Sbjct: 143 -----------------------------ILRLREVLNEILVKHTKQPLERIERDTERDY 173 Query: 212 IWTGAEAKKVGLIDVVGG 229 + EAK+ GLID V Sbjct: 174 FMSAVEAKQYGLIDEVIY 191 >gi|188589670|ref|YP_001921112.1| peptidase S14, ClpP [Clostridium botulinum E3 str. Alaska E43] gi|188499951|gb|ACD53087.1| peptidase S14, ClpP [Clostridium botulinum E3 str. Alaska E43] Length = 377 Score = 38.8 bits (88), Expect = 0.93, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 65/189 (34%), Gaps = 35/189 (18%) Query: 44 RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 GQI S + E+++ D+ T V ++S GG + AI+ ++ + + ++ Sbjct: 32 DGQITAS-DFKEQLDLYKDRDNIT---VRINSNGGDVFTASAIYTLLK--DCKASITVKI 85 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 MA SA +++ A + ++ TS+ L Sbjct: 86 DGMAMSAATVVAMAGDKVLIPSTSIFMIHDPLA--------------------------- 118 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVG 222 N ++ + + + + + + ++ L +W TG +A G Sbjct: 119 -GLCGYYNVSDLEKVINRLSVVKNTIINAYINKTDKTKEEIEDLMTNELWLTGEDAVNEG 177 Query: 223 LIDVVGGQE 231 D V E Sbjct: 178 FCDEVMFSE 186 >gi|15606541|ref|NP_213921.1| ATP-dependent Clp protease proteolytic subunit [Aquifex aeolicus VF5] gi|6225158|sp|O67357|CLPP_AQUAE RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|2983755|gb|AAC07315.1| ATP-dependent Clp protease proteolytic subunit [Aquifex aeolicus VF5] Length = 201 Score = 38.8 bits (88), Expect = 0.93, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 56/176 (31%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + D + + ++SPGGS AG AI+ +Q +K I + A Sbjct: 51 IVAQLLFLESQDPDKDIYLYINSPGGSVTAGLAIYDTMQYIKPDVVTICMGQAASMGAIL 110 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A A S + L Sbjct: 111 LAAGAPGKRYALPHSRIMIHQPLGGIQGQ------------------------------A 140 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVV 227 + + + + + ++++ P DK + + EAK GLID V Sbjct: 141 TDIIIHAEEIKRIKEMLIDILAKHTGQPKDKIANDIERDYFMSPYEAKDYGLIDKV 196 >gi|323149170|ref|YP_004221999.1| ATP-dependent Clp protease proteolytic subunit [Coccomyxa sp. C-169] gi|317467226|gb|ADV29847.1| ATP-dependent Clp protease proteolytic subunit [Coccomyxa sp. C-169] Length = 195 Score = 38.8 bits (88), Expect = 0.94, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 57/183 (31%), Gaps = 33/183 (18%) Query: 50 SQELIERI----ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 EL ++ ++ ++ + L + ++SPGGS G A++ ++ VK I Sbjct: 40 DDELANQLIGIMLYLNAEEKSKGLYIYINSPGGSVTCGIAVYDSMNYVKADVTTICVGTA 99 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 + ++ L +A S + Sbjct: 100 ASMASFVLAGGDRGKRIALPHSRIMIHQPEG---------------------GSQGQASE 138 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 SE + Q + L SR++ D+ + EAK+ GL+D Sbjct: 139 VLSESSEVMRIRRQVGKIYAERTGQPLSRISRDMDRDQ--------FMSAREAKEYGLVD 190 Query: 226 VVG 228 V Sbjct: 191 QVA 193 >gi|116334974|ref|YP_802469.1| ATP-dependent Clp protease proteolytic subunit [Candidatus Carsonella ruddii PV] gi|122940475|sp|Q05FR8|CLPP_CARRP RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|116235255|dbj|BAF35103.1| ATP-dependent Clp protease proteolytic subunit [Candidatus Carsonella ruddii PV] Length = 194 Score = 38.8 bits (88), Expect = 0.94, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 3/120 (2%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IED+ ++ ++ +++ +I+ ++SPGG +G +I+ IQ +K+ Sbjct: 29 VIYLNGAIEDTMASLIVSQL-MFLDSENSKDIILYINSPGGVVSSGLSIYDTIQFLKSDV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L + S + L ++ + ++K Sbjct: 88 STICIGQAASMAAVLLAAGKKGKRFCFPNSRIMIHQPLGYAQGQASDVEIHAREMINIKQ 147 >gi|293365057|ref|ZP_06611774.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus oralis ATCC 35037] gi|307702233|ref|ZP_07639193.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus oralis ATCC 35037] gi|315612826|ref|ZP_07887737.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus sanguinis ATCC 49296] gi|331266748|ref|YP_004326378.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus oralis Uo5] gi|291316507|gb|EFE56943.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus oralis ATCC 35037] gi|307624246|gb|EFO03223.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus oralis ATCC 35037] gi|315314936|gb|EFU62977.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus sanguinis ATCC 49296] gi|326683420|emb|CBZ01038.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus oralis Uo5] Length = 196 Score = 38.8 bits (88), Expect = 0.94, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 59/192 (30%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + DS + + +++PGGS AG AI + +K Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + +K+ Sbjct: 87 QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 ++++++ ++ ++ W + Sbjct: 147 RK----------------------------TLEQILADNSGKSVEQIHADAERDYWMSAQ 178 Query: 217 EAKKVGLIDVVG 228 E + G ID + Sbjct: 179 ETLEYGFIDEIM 190 >gi|325294216|ref|YP_004280730.1| ATP-dependent Clp protease proteolytic subunit [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064664|gb|ADY72671.1| ATP-dependent Clp protease proteolytic subunit [Desulfurobacterium thermolithotrophum DSM 11699] Length = 200 Score = 38.8 bits (88), Expect = 0.95, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 70/229 (30%), Gaps = 33/229 (14%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISR 62 +++I ++V + + ++ + + I + I+D + ++ ++ + Sbjct: 1 MEEILNQFVPIVIEQTGRGERAYDIYSRLLKDRI--IMLGTPIDDHVANLIVAQLLFLEA 58 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 +D + + ++SPGG AG AI+ +Q +K I + A L + A Sbjct: 59 EDPEKDIYLYINSPGGVVTAGLAIYDTMQYIKPDVVTICLGQAASMGAVLLAAGAKGKRF 118 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A + + L Sbjct: 119 ALPHARIMIHQPLG---------------------GFQGQATDIEIHAKEILRLKKMLNE 157 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 S H L R I D + EA+K GLID V + Sbjct: 158 ILSKHTGQSL----RKIEKDTERDY----FMSAEEAQKYGLIDKVLTRR 198 >gi|255994401|ref|ZP_05427536.1| Clp protease [Eubacterium saphenum ATCC 49989] gi|255993114|gb|EEU03203.1| Clp protease [Eubacterium saphenum ATCC 49989] Length = 196 Score = 38.8 bits (88), Expect = 0.95, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 61/195 (31%), Gaps = 31/195 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I IE + +I ++ + +DS+ + + ++SPGG +G AI+ +Q +K + Sbjct: 29 IIFIGEPIESNMASSIIAQLLFLEAEDSSKDICIYINSPGGDVTSGLAIYDTMQFIKPQV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + +A L++ A S + + ++ ++ + + Sbjct: 89 QTVCVGMAASMAAVLLLAGEKGKRFALPNSEIMIHQPMG---GASGQASEIKIAAEHIIK 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + K + T E Sbjct: 146 TRDKLNRLISKHTT--------------------------KNLSTIEEDTDRDKYMTANE 179 Query: 218 AKKVGLIDVVGGQEE 232 A G+ID V + Sbjct: 180 ALDYGIIDSVLKSRD 194 >gi|77411264|ref|ZP_00787614.1| ClpP protease family protein [Streptococcus agalactiae CJB111] gi|77162690|gb|EAO73651.1| ClpP protease family protein [Streptococcus agalactiae CJB111] Length = 232 Score = 38.8 bits (88), Expect = 0.95, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 64/205 (31%), Gaps = 37/205 (18%) Query: 33 DNSPHVARIAIRGQIEDSQELIERIE-RISRDDSATA---LIVSLSSPGGSAYAGEAIFR 88 + V + I GQI D + + + ++D + + + ++SPGG +A I+ Sbjct: 8 TDEGGVRTLRIEGQIADETWFGDEVTPQQFKNDLISGTGDITLWINSPGGDVFAAAQIYN 67 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 + + VI +AASA +I+ A + + +++ Sbjct: 68 MLMDYQGDVHVII--DGLAASAASVIAMAGTTVSMSPVAMMMIHN--------------- 110 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 + K + + + K L Sbjct: 111 ---PWTFAQGEAKDMAKVIEMLGE------------IKESIINAYELRTGLSRTKISHLM 155 Query: 209 DGRIW-TGAEAKKVGLIDVVGGQEE 232 D W +A ++G D V ++E Sbjct: 156 DSESWFNAKKAVELGFADKVLFEKE 180 >gi|316936727|gb|ADU60358.1| capsid protein [Wolbachia phage WO] gi|316936729|gb|ADU60359.1| capsid protein [Wolbachia phage WO] Length = 137 Score = 38.8 bits (88), Expect = 0.98, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 + ++++ +Q VD Y FV+L++ +R + +K G + G +A ++GL D Sbjct: 2 HMEPMTSESLESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAIEIGLAD 60 Query: 226 VV 227 + Sbjct: 61 GI 62 >gi|121534385|ref|ZP_01666209.1| protein of unknown function DUF114 [Thermosinus carboxydivorans Nor1] gi|121307155|gb|EAX48073.1| protein of unknown function DUF114 [Thermosinus carboxydivorans Nor1] Length = 277 Score = 38.8 bits (88), Expect = 0.98, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 4/149 (2%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+ ++ I D + L +PGG A E I A+ + K + H Sbjct: 67 IEDSEHILRAIRLTPDDMPID---LVLHTPGGLVLASEQIAHALMRHPA-KVTVFVPHYA 122 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + A I++ L L QYP SI V + + Sbjct: 123 MSGGTMIALAADEIVMDCNAVLGPVDPQLGQYPAASILKAVKQKSIDRVDDNTLIMADIA 182 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 + + + + D R +++ Sbjct: 183 EKAIKQVEDFVARLLSDKMDAEKARELAK 211 >gi|322387412|ref|ZP_08061022.1| ATP-dependent Clp protease, protease subunit [Streptococcus infantis ATCC 700779] gi|321141941|gb|EFX37436.1| ATP-dependent Clp protease, protease subunit [Streptococcus infantis ATCC 700779] Length = 196 Score = 38.8 bits (88), Expect = 0.98, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 2/155 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + DS + + +++PGGS AG AI + +K Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + +K+ Sbjct: 87 QTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + D L Sbjct: 147 RKTLEQILADNSGKSVEQIHKDAERDYWMSAQETL 181 >gi|168013186|ref|XP_001759282.1| predicted protein [Physcomitrella patens subsp. patens] gi|162689595|gb|EDQ75966.1| predicted protein [Physcomitrella patens subsp. patens] Length = 205 Score = 38.8 bits (88), Expect = 0.98, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 50/181 (27%), Gaps = 29/181 (16%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + +I ++ + D + + ++SPGGS AG I+ A++ K + + Sbjct: 26 SADVIISQLLLLDAQDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCFGLAASM 85 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 A L + + V L + + + Sbjct: 86 GAFLLAAGTKGKRYCMPNARVMIHQPLG-------------------GAGGTAIDGALQV 126 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 +Q ++ V EAK+ GL+D V Sbjct: 127 REMMYHKYKLQKIMSRLTGQPEAKVEA----------DTDRDNFMNAWEAKEYGLVDGVI 176 Query: 229 G 229 G Sbjct: 177 G 177 >gi|327439480|dbj|BAK15845.1| protease subunit of ATP-dependent Clp protease [Solibacillus silvestris StLB046] Length = 245 Score = 38.8 bits (88), Expect = 0.99, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 74/207 (35%), Gaps = 21/207 (10%) Query: 33 DNSPHVARIAIRGQI--------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 D V+ + I G I + ++ +++ +D ++V L+SPGGSA+ G Sbjct: 28 DEEKGVSELTIYGDIGESWFWDSTSAVDVDNALKQAGTND----IVVRLNSPGGSAFDGI 83 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG----VLFQYPY 140 AI+ +++ + V V A SA +I+ A + ++ +++ V Sbjct: 84 AIYNRLKEHPGK--VTIHVDGWACSAASIIAMAGDEVIMGTGAMMMIHEASNIVWGTKND 141 Query: 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 ++ D L + M E+ + + + Sbjct: 142 MRKVADMLEELEAGIVDVYMTKAKISREEITEQMNAETWFSALKAVEIGFATSTALTVEG 201 Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVV 227 D++ ++ R +A + ID + Sbjct: 202 KDESEEMTQMRAQM--QAMQNK-IDEL 225 >gi|168236909|ref|ZP_02661967.1| ClpP protease [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734371|ref|YP_002117151.1| ClpP protease [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194709873|gb|ACF89094.1| ClpP protease [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290051|gb|EDY29410.1| ClpP protease [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 282 Score = 38.8 bits (88), Expect = 0.99, Method: Composition-based stats. Identities = 23/243 (9%), Positives = 64/243 (26%), Gaps = 12/243 (4%) Query: 57 IERISRDDS-ATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 I+ + DD+ + V G + I A++ + + L Sbjct: 34 IKAAATDDNSISVFDVIGQDYWGEGVTAKRIAGALRAMNGADVTVNINSPGGDMFEGLAI 93 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 + ++ + D + + + + N Sbjct: 94 YNLLREYQGKVTVKVLGIAASAASVIAMAGDDIQIGRGAFLM---IHNCWVVAMGNRHDF 150 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG-AEAKKVGLIDVVGGQEEV- 233 + ++ + + + + L D + G ++A + GL D + + V Sbjct: 151 AELSASLEPFDNAMADIYAARSGLDMVTVQKLMDAESYIGGSDAVEKGLADSLLSADAVS 210 Query: 234 ------WQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 +L L + K ++ + T ++ K + + Sbjct: 211 DGDETPAAALRKLDALLAKTSTPRSERRKLIKALSGGMSGAATNHDGTPGAAEEIKPEVI 270 Query: 288 WAV 290 ++ Sbjct: 271 NSL 273 >gi|60389777|sp|Q891J7|CLPP_CLOTE RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp Length = 194 Score = 38.8 bits (88), Expect = 0.99, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 31/177 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGGS +G AI+ +Q +K I + A Sbjct: 44 IVAQLLFLEAEDPDKDIFLYINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A A S + L + Sbjct: 104 LAAGAKGKRFALPNSEIMIHQPLGGFQGQ------------------------------A 133 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVG 228 + + D + ++SE P + +AK GLID V Sbjct: 134 TDIGIHADRILKIKQNLNSILSEKTGQPLEVIQRDTERDNFMDANQAKDYGLIDEVM 190 >gi|86137328|ref|ZP_01055905.1| Protease subunit of ATP-dependent Clp protease [Roseobacter sp. MED193] gi|85825663|gb|EAQ45861.1| Protease subunit of ATP-dependent Clp protease [Roseobacter sp. MED193] Length = 202 Score = 38.8 bits (88), Expect = 0.99, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 58/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + + ++SPGG +G +I+ +Q +K + Sbjct: 30 IIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + + S V + Sbjct: 90 STLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMVHQPSGGFQGQ---------------- 133 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + + + + DK L Sbjct: 134 --------------ATDIMIHAEETLKLKRRLNEIYVKHTGQELDKVEAALERDNFMDPE 179 Query: 217 EAKKVGLIDVV 227 EAK GLID + Sbjct: 180 EAKAFGLIDEI 190 >gi|320547331|ref|ZP_08041622.1| ATP-dependent Clp protease, protease subunit [Streptococcus equinus ATCC 9812] gi|320448029|gb|EFW88781.1| ATP-dependent Clp protease, protease subunit [Streptococcus equinus ATCC 9812] Length = 196 Score = 38.8 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 24/192 (12%), Positives = 58/192 (30%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 27 IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S + + D + + Sbjct: 87 QTIVMGIAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + ++++++ +K ++ W + Sbjct: 145 --------------------------KTRQNLEQILADNSGQTLEKVHADAERDNWMSAQ 178 Query: 217 EAKKVGLIDVVG 228 E + G ID + Sbjct: 179 ETLEYGFIDEIM 190 >gi|295695312|ref|YP_003588550.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus tusciae DSM 2912] gi|295410914|gb|ADG05406.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus tusciae DSM 2912] Length = 196 Score = 38.8 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 57/188 (30%), Gaps = 32/188 (17%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 I + + + + + DD + + ++SPGGS AG AI+ +Q +K + Sbjct: 39 IVANLVVAQLLFLAAEDDK-KDIRLYINSPGGSITAGMAIYDTMQYIKPDVSTVCIGMAA 97 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + A L + A S + L V+ + + + + K Sbjct: 98 SMGAFLLAAGTKGKRFALPNSEIMIHQPLG---GVRGQAADIKIHADWILRTKDKINRIL 154 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLID 225 SE P +K EAK GLID Sbjct: 155 ---------------------------SERTGQPLEKIERDTDRDNFMDAEEAKAYGLID 187 Query: 226 VVGGQEEV 233 V ++ Sbjct: 188 EVISPVDL 195 >gi|323528156|ref|YP_004230308.1| hypothetical protein BC1001_3837 [Burkholderia sp. CCGE1001] gi|323385158|gb|ADX57248.1| protein of unknown function DUF107 [Burkholderia sp. CCGE1001] Length = 575 Score = 38.8 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 3/76 (3%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSP 76 + + V I + G I + ++ ++R + D A ++ L +P Sbjct: 72 AVQAATLPAPAAGGQAPNSVVVIPVSGAIGPASADFIVRSLQRAA-DSHAQLAVLQLDTP 130 Query: 77 GGSAYAGEAIFRAIQK 92 GG + I +AI Sbjct: 131 GGLDTSMRQIIKAILA 146 >gi|147677139|ref|YP_001211354.1| protease subunit of ATP-dependent Clp proteases [Pelotomaculum thermopropionicum SI] gi|259585961|sp|A5D447|CLPP_PELTS RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|146273236|dbj|BAF58985.1| protease subunit of ATP-dependent Clp proteases [Pelotomaculum thermopropionicum SI] Length = 194 Score = 38.8 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 59/190 (31%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D+ +I ++ + +D + ++SPGG AG AI+ +Q V++ Sbjct: 29 IIFLGGPIDDNTANLIIAQMLFLEAEDPEKDIQFYINSPGGVVTAGMAIYDTMQYVRSPV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ L + A + + + L Sbjct: 89 ATICIGQAASMASLLLAAGAKGKRYSLPYARILIHQPLG--------------------- 127 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 S H + +R+ D + E Sbjct: 128 GVQGQATDIEIHAKEILRMRQFLNEILSRHTGQPIEKIARDTERD--------YFMSAQE 179 Query: 218 AKKVGLIDVV 227 AK+ G+ID V Sbjct: 180 AKEYGIIDEV 189 >gi|330722307|gb|EGH00174.1| ATP-dependent Clp protease proteolytic subunit [gamma proteobacterium IMCC2047] Length = 210 Score = 38.8 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 57/166 (34%), Gaps = 7/166 (4%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 42 VIFLVGPVEDHMANLVVAQMLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A+ S V L + ++ I +++ Sbjct: 102 STLCIGQAASMGALLLAGGAAGKRFCLPHSRVMIHQPLGGFQGQATDIEIHTKEILTIRD 161 Query: 158 S-----PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 D + + + V E+R+ Sbjct: 162 KLNRVLSKHTGQDLDKIATDTDRDNFMDGHAAVEYGLIDQVMENRH 207 >gi|28211967|ref|NP_782911.1| ATP-dependent Clp protease proteolytic subunit [Clostridium tetani E88] gi|28204410|gb|AAO36848.1| ATP-dependent clp protease proteolytic subunit [Clostridium tetani E88] Length = 202 Score = 38.8 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 31/177 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGGS +G AI+ +Q +K I + A Sbjct: 52 IVAQLLFLEAEDPDKDIFLYINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFL 111 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A A S + L + Sbjct: 112 LAAGAKGKRFALPNSEIMIHQPLGGFQGQ------------------------------A 141 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVG 228 + + D + ++SE P + +AK GLID V Sbjct: 142 TDIGIHADRILKIKQNLNSILSEKTGQPLEVIQRDTERDNFMDANQAKDYGLIDEVM 198 >gi|77463765|ref|YP_353269.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter sphaeroides 2.4.1] gi|126462595|ref|YP_001043709.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter sphaeroides ATCC 17029] gi|221639635|ref|YP_002525897.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter sphaeroides KD131] gi|332558621|ref|ZP_08412943.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter sphaeroides WS8N] gi|124013827|sp|Q3J1G6|CLPP_RHOS4 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|166214702|sp|A3PKS1|CLPP_RHOS1 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|254763798|sp|B9KJU9|CLPP_RHOSK RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|77388183|gb|ABA79368.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodobacter sphaeroides 2.4.1] gi|126104259|gb|ABN76937.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodobacter sphaeroides ATCC 17029] gi|221160416|gb|ACM01396.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter sphaeroides KD131] gi|332276333|gb|EGJ21648.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter sphaeroides WS8N] Length = 210 Score = 38.8 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 21/191 (10%), Positives = 55/191 (28%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D + ++ + ++ + + + ++SPGG +G +I+ +Q ++ + Sbjct: 38 IIFLSGPVHDGMSSLICAQLLFLEAENPSKEIAMYINSPGGVVTSGLSIYDTMQYIRPKV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + + + S V Y Sbjct: 98 STLVIGQAASMGSLLLTAGEKGMRFSLPNSRVMVHQPSGGYQGQ---------------- 141 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + + + + L + Sbjct: 142 --------------ATDIMIHARETEKLKRRLNEIYVRHTGQDLETVEAALERDNFMSAE 187 Query: 217 EAKKVGLIDVV 227 +AK GLID + Sbjct: 188 DAKAWGLIDEI 198 >gi|330814219|ref|YP_004358458.1| ATP-dependent Clp protease proteolytic subunit [Candidatus Pelagibacter sp. IMCC9063] gi|327487314|gb|AEA81719.1| ATP-dependent Clp protease proteolytic subunit [Candidatus Pelagibacter sp. IMCC9063] Length = 204 Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I + ++ + ++++ + + ++SPGG G AI+ +Q +K Sbjct: 38 IIFLVGPINSQVSSLISAQLLFLESENNSKEIFMYINSPGGIVTDGLAIYDTMQYIKPAV 97 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + ++ S + V + + + + Sbjct: 98 ATLCIGQACSMGSFLLAAGEKGQRMSLPNS---RVMVHQPSAGFQGQATDIEIHANEIMQ 154 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + K + S+ +K L + + Sbjct: 155 TKKK---------------------------LNEIYSKHTGQSVEKIKEALERDKFMSAE 187 Query: 217 EAKKVGLIDVV 227 EAK GLID V Sbjct: 188 EAKAFGLIDKV 198 >gi|315122830|ref|YP_004063319.1| ATP-dependent Clp protease proteolytic subunit [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496232|gb|ADR52831.1| ATP-dependent Clp protease proteolytic subunit [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 216 Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 65/190 (34%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I GQIED + + ++ + ++ + + ++SPGG AG AI+ +Q + K Sbjct: 44 IVFITGQIEDHMAALICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---K 100 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 P ++ + A++ + A+ G+ F P + L Sbjct: 101 PPVSTLCIGQAASMGSLLLAAGK-----------KGMRFALPNARIML------------ 137 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + + + + + R + + L + + Sbjct: 138 --HQPSGGFSGQASDIERHARDIIKIKHRLNNIYVKHCGR-VYEEVEQTLDRDCFMSAED 194 Query: 218 AKKVGLIDVV 227 A GLID V Sbjct: 195 AHAWGLIDKV 204 >gi|307706962|ref|ZP_07643761.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus mitis SK321] gi|307617676|gb|EFN96844.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus mitis SK321] Length = 196 Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 59/192 (30%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + DS + + +++PGGS AG AI + +K Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + + Sbjct: 87 QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + ++++E+ +K ++ W + Sbjct: 145 --------------------------KTRNILEKILAENSGQSIEKVHADAERDNWMSAQ 178 Query: 217 EAKKVGLIDVVG 228 E + G ID + Sbjct: 179 ETLEYGFIDEIM 190 >gi|255019392|ref|ZP_05291501.1| ATP-dependent Clp protease proteolytic subunit [Acidithiobacillus caldus ATCC 51756] gi|254971164|gb|EET28617.1| ATP-dependent Clp protease proteolytic subunit [Acidithiobacillus caldus ATCC 51756] Length = 214 Score = 38.4 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 67/200 (33%), Gaps = 35/200 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED ++ ++ + ++ + + ++SPGGS AG AI+ +Q ++ Sbjct: 44 VIFLVGPVEDLMANLVVAQLLFLEAENPDKDIALYINSPGGSVTAGLAIYDTMQFIRPAV 103 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A+ A + + Y V ++ I + Sbjct: 104 STVCIGQAASMGAVLLAAGAAGKRYALPNARIMLHQPSGGYQGVAHDIEIHAKEILRI-- 161 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 Q + +++ + + + L + E Sbjct: 162 -----------------RQRLNEILVEHTGQSQQRIEQ----------DLDRDFFMSAQE 194 Query: 218 AKKVGLIDVV----GGQEEV 233 AK L+D V G E+ Sbjct: 195 AKDYHLVDSVITHRGDNEDA 214 >gi|295696926|ref|YP_003590164.1| Enoyl-CoA hydratase/isomerase [Bacillus tusciae DSM 2912] gi|295412528|gb|ADG07020.1| Enoyl-CoA hydratase/isomerase [Bacillus tusciae DSM 2912] Length = 254 Score = 38.4 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 55/188 (29%), Gaps = 26/188 (13%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 ++ L E I +D + ++++ + + + V + + Sbjct: 31 AEALAEAIRECRQDPAVRGIVITGAGD--------------RAFISGGDVKQYLGKGGGR 76 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A + V + V V+ ++ + Sbjct: 77 AAIYAVMSRMRYVLEQIYFCPKPVVAAARGAVRGGGAEVLAA------------CHWRLG 124 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 +V +Q + W + R VL DG ++ G EA + GL+D + Sbjct: 125 TPDVSVGFVQVTLGIVPGWGGGSILVRRLGEARALPVLLDGEVYNGEEAVERGLLDELVP 184 Query: 230 QEEVWQSL 237 +E+ + Sbjct: 185 GDELLERA 192 >gi|223940354|ref|ZP_03632209.1| protein of unknown function DUF107 [bacterium Ellin514] gi|223890959|gb|EEF57465.1| protein of unknown function DUF107 [bacterium Ellin514] Length = 423 Score = 38.4 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 69/214 (32%), Gaps = 33/214 (15%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSS 75 + + +V + + VA I I G I + + I+ + + A L++ L + Sbjct: 5 LAIAIVILMYGGLACLRAADVALIKIHGAIGPATADYIARAIDVAGKSNDA-CLVIQLDT 63 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 PGG + + I + + S A+ +A + + V Sbjct: 64 PGGLLDSTKEIVQK-----------FYASTVPTVVYVAPSGANA--GSAGCFITLAADVA 110 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 P A P S K +M+ +++ + ++E Sbjct: 111 AMAPNTSI----------------GAAHPVTLSPGGEKTDDVMKQKLENFASSSIEAIAE 154 Query: 196 SRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVG 228 R + + + T +A K+ +ID++ Sbjct: 155 KRGRNVEWAKSSVRESASTTAEKALKLKVIDLIA 188 >gi|119510658|ref|ZP_01629787.1| Peptidase S14, ClpP [Nodularia spumigena CCY9414] gi|119464709|gb|EAW45617.1| Peptidase S14, ClpP [Nodularia spumigena CCY9414] Length = 210 Score = 38.4 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 67/191 (35%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + ++ ++ + +DS + + ++SPGGS YAG AI+ +Q+++ Sbjct: 33 IIFLGTPIDDTVANSIVAQLLFLDAEDSEKDIQIYINSPGGSVYAGMAIYDTMQQIRPDV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + ++ ++ S + L + + + + + Sbjct: 93 VTICFGLAASMGAFLLAAGSAGKRMSLPDSRIMIHQPLG---GAQGQAIDIEIQAREILY 149 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 K P ++ ++ + + Sbjct: 150 VKAKLNQLLGH---------------------------HTGQPLERLEADTERDFFMSAE 182 Query: 217 EAKKVGLIDVV 227 EAK GLID V Sbjct: 183 EAKNYGLIDQV 193 >gi|311030263|ref|ZP_07708353.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus sp. m3-13] Length = 193 Score = 38.4 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I +I D + ++ ++ ++ DD + + ++SPGGS AG AI + +K Sbjct: 29 IIMIGEEINDQIANSVVAQLLFLAADDPEKDISIYINSPGGSTTAGFAILDTMHYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L++ +A S + L ++ Sbjct: 89 RTICIGMAASFGAMLLMAGTKGKRLALPNSEIMIHQPLGGARGQATEIEISARR------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + +++++ P +K T Sbjct: 143 ------------------------ILKLKGDLHKMIADYTGQPIEKIERDTDRDNFMTAG 178 Query: 217 EAKKVGLIDVV 227 EAK+ G+ID V Sbjct: 179 EAKEYGIIDEV 189 >gi|254555672|ref|YP_003062089.1| Clp protease domain protein [Lactobacillus plantarum JDM1] gi|254044599|gb|ACT61392.1| Clp protease domain protein [Lactobacillus plantarum JDM1] Length = 247 Score = 38.4 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 34/261 (13%), Positives = 81/261 (31%), Gaps = 48/261 (18%) Query: 41 IAIRGQIEDSQE--LIERIER---ISRD------DSATALIVSLSSPGGSAYAGEAIFRA 89 I ++G I + + + + +E +D D + + V ++S GG AG I+ A Sbjct: 4 INVKGPIISNDDKWIYDMLEMDSTAPKDVIDALPDDGSTVEVDINSGGGLMDAGTEIYTA 63 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 + + ++ + S L + +G Sbjct: 64 LMAYQ------------------------GKVMVNIVGMAASSASLIAMAGNPTRISPVG 99 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD 209 + + ++ + ++++ Q + + D Sbjct: 100 QIMIHNVAGGLRGDYRDQAKLSEILKQS--------SEAIANAYHLKTGLSMEDLQAKMD 151 Query: 210 GRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS--IRKIKDWNPPKNYWFCDLKNL 266 + +AK++G +D + +++ L A G I KI + N +++ Sbjct: 152 SETYLNADQAKELGFVDEIMFDDQI--ELVADGGLPKPAIDKITELMKQNNSGMTTARSI 209 Query: 267 SISSLLEDTIPLMKQTKVQGL 287 + L + I + Q L Sbjct: 210 NPFKLSDSDIDRITTAVTQKL 230 >gi|118431752|ref|NP_148417.2| serine protease [Aeropyrum pernix K1] gi|116063074|dbj|BAA81162.2| serine protease [Aeropyrum pernix K1] Length = 503 Score = 38.4 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 86/268 (32%), Gaps = 37/268 (13%) Query: 27 WSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 +S+ P I I G I+++ L + IER +++ LIV L++PGG A Sbjct: 78 ATSYERVVGPKALIIRIEGTIDNAMMDYLKQSIERAEEENAV--LIVELNTPGGFVDAAT 135 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 + +I K + V + + +L Sbjct: 136 EMVVSISKAR---------------------IPVVGYVVEKWAESAGTMILMSTHIAAMQ 174 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + S++ + P P + +++ + P Sbjct: 175 PGTIIGSVQPIAYDPTTGSYQPVLD---------SKIINPIVKTLCEHGATRGRNPEALV 225 Query: 205 LVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 + + EA + G+ID++ + E+ Q + V I + + +Y Sbjct: 226 RFVLYNDNYGAEEALEKGVIDLIARDRSELLQLIDGKVVRLPIGETVLIDVNGSY-EVLE 284 Query: 264 KNLSISSLLEDTIPLMKQTKVQ-GLWAV 290 +L I L + P++ + G A+ Sbjct: 285 PDLRIRVLHSLSDPMLSGILLSIGALAL 312 >gi|309800003|ref|ZP_07694203.1| Clp protease [Streptococcus infantis SK1302] gi|308116402|gb|EFO53878.1| Clp protease [Streptococcus infantis SK1302] Length = 196 Score = 38.4 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 2/155 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + DS + + +++PGGS AG AI + +K Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + +K+ Sbjct: 87 QTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + D L Sbjct: 147 RKTLEQILADNSGKSVEQIHADAERDYWMSAQETL 181 >gi|116734381|gb|ABK20179.1| putative SohB/S49 peptidase [Allochromatium vinosum DSM 180] Length = 57 Score = 38.4 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 17/49 (34%) Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 ++ G W G A ++GL D + ++ A ++ Sbjct: 5 TRLDLERVATGEYWHGRRAVELGLADAIQTSDDFILEAGAEMELLKLKY 53 >gi|332638033|ref|ZP_08416896.1| ATP-dependent Clp protease proteolytic subunit [Weissella cibaria KACC 11862] Length = 197 Score = 38.4 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IE + +I ++ + D + + ++SPGG AG AI+ + + Sbjct: 29 IIMVSGPIESQMATAIIAQLLFLDAQDPDKDIYMYINSPGGEVNAGMAIYDTMNFIHADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 I + ++ S A S Sbjct: 89 QTIVIGLAASMASVLASSGAKGKRFMLPNSQFMIHQPSG 127 >gi|302526626|ref|ZP_07278968.1| 2-ketocyclohexanecarboxyl-CoA hydrolase [Streptomyces sp. AA4] gi|302435521|gb|EFL07337.1| 2-ketocyclohexanecarboxyl-CoA hydrolase [Streptomyces sp. AA4] Length = 268 Score = 38.4 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 18/175 (10%), Positives = 42/175 (24%), Gaps = 5/175 (2%) Query: 72 SLSSPGGSAYA-GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 +S GS ++ ++ + I A T Sbjct: 25 RGNSLTGSMMPVIREMWAEVRDDPWIRAAIVIGAGEKHFCTGADVHAVAGRGGMSTGNGP 84 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV--NPKAVQMMQDVVDSSYHW 188 +F P + ++ + + V A M V Sbjct: 85 LTDEVFWSPRQNRVWKPVISAVNGLVAGAGLHFVVDADIVLAADHAAFMDTHVNVGLVGA 144 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIW--TGAEAKKVGLIDVVGGQEEVWQSLYALG 241 + R + G+ + A ++GL+D + +++ + Sbjct: 145 MENIGLAKRLPLGSALRMTLMGKSYRMPAQRAYQLGLVDELSTSDDLMADAEEMA 199 >gi|71276511|ref|ZP_00652786.1| Peptidase S14, ClpP [Xylella fastidiosa Dixon] gi|71900578|ref|ZP_00682705.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1] gi|170729732|ref|YP_001775165.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa M12] gi|226706561|sp|B0U5N1|CLPP_XYLFM RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|71162688|gb|EAO12415.1| Peptidase S14, ClpP [Xylella fastidiosa Dixon] gi|71729635|gb|EAO31739.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1] gi|167964525|gb|ACA11535.1| Endopeptidase Clp [Xylella fastidiosa M12] Length = 208 Score = 38.4 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D ++ ++ + ++ + + ++SPGG AG AI+ +Q +K Sbjct: 36 LIFLVGPIDDYMANLIVAQLLFLEAENPEKDINIYINSPGGVVTAGMAIYDTMQYIKPAV 95 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S AS A S V L + Sbjct: 96 STICVGQAASMGALLLASGASGKRYALPNSRVMIHQPLGGFQGQ---------------- 139 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 V + + + ++++ + + Sbjct: 140 --------------ATDVDIHAREILALRARLNEILAKHTGQSLETIAHDTERDNFKSAV 185 Query: 217 EAKKVGLIDVVGGQEE 232 +A+ GL+D V GQ + Sbjct: 186 DAQAYGLVDQVFGQRQ 201 >gi|322374649|ref|ZP_08049163.1| Clp protease [Streptococcus sp. C300] gi|321280149|gb|EFX57188.1| Clp protease [Streptococcus sp. C300] Length = 196 Score = 38.4 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 59/192 (30%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + DS + + +++PGGS AG AI + +K Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + +K+ Sbjct: 87 QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 ++++++ ++ ++ W + Sbjct: 147 RK----------------------------TLEKILADNSGKSVEQIHADAERDYWMSAQ 178 Query: 217 EAKKVGLIDVVG 228 E + G ID + Sbjct: 179 ETLEYGFIDEIM 190 >gi|195033485|ref|XP_001988693.1| GH11302 [Drosophila grimshawi] gi|193904693|gb|EDW03560.1| GH11302 [Drosophila grimshawi] Length = 281 Score = 38.4 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 2/70 (2%) Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSLYA-LGVDQSIRKIKDWNPPK 256 + L+ GR++T EA +VGL+D + EE + + + + Sbjct: 175 PRREAERSLNQGRMFTTEEALRVGLVDEIASSKEEALAKCADFIATFAKVNPLARSLTKQ 234 Query: 257 NYWFCDLKNL 266 + DL+ L Sbjct: 235 QFRSADLQQL 244 >gi|196019570|ref|XP_002119003.1| hypothetical protein TRIADDRAFT_62972 [Trichoplax adhaerens] gi|190577377|gb|EDV18511.1| hypothetical protein TRIADDRAFT_62972 [Trichoplax adhaerens] Length = 203 Score = 38.4 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 63/134 (47%), Gaps = 10/134 (7%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQ------ELIERIERISRDDSATALIVSLSSPGGSAYA 82 E+ S + G I+ + E+ + + D+ +++ L SPGG+ Sbjct: 71 KKEENKSSKTYLLKFNGDIQAKEVDSLKKEITAILSVANNGDN---VVLMLESPGGTVNG 127 Query: 83 GEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 ++++ R + V +AAS GY+++ ++ I+AA ++VGSIGVL + P Sbjct: 128 YGLATSELERLTARGLHLTVLVDRVAASGGYMMAVVADRIIAAPFAIVGSIGVLTEIPNF 187 Query: 142 KPFLDKLGVSIKSV 155 ++K G+ + + Sbjct: 188 NELMEKNGIKYEQI 201 >gi|320106219|ref|YP_004181809.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Terriglobus saanensis SP1PR4] gi|319924740|gb|ADV81815.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Terriglobus saanensis SP1PR4] Length = 198 Score = 38.4 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 30/190 (15%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 I I + +I ++ +S +D + + ++SPGGS AG AI+ +Q +KN + Sbjct: 35 PIDDNIANV--IIAQLLFLSGEDPEKDIQLYINSPGGSITAGMAIYDTMQYIKNDVSTLC 92 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + A L++ A S + L + ++ + + + Sbjct: 93 IGQAASMGAFLLMAGKKGKRFALPNSRILIHQPLIMGGGISGQATEIDIHAREI------ 146 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKK 220 ++ +E ++ I A+AK+ Sbjct: 147 ---------------------LRIRELMNKIQAEHTGQTLEQIERDTDRDFIMNSAQAKE 185 Query: 221 VGLIDVVGGQ 230 GLID + + Sbjct: 186 YGLIDDIITR 195 >gi|71901066|ref|ZP_00683176.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1] gi|71729193|gb|EAO31314.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1] Length = 208 Score = 38.4 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 33/196 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D ++ ++ + ++ + + ++SPGG AG AI+ +Q +K Sbjct: 36 LIFLVGPIDDYMANLVVAQLLFLEAENPEKDINIYINSPGGVVTAGMAIYDTMQYIKPAV 95 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S AS A S V L + +D Sbjct: 96 STICVGQAASMGALLLASGASGKRYALPNSRVMIHQPLGGFQGQATDIDIHARE------ 149 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + ++++ + + Sbjct: 150 ------------------------ILALRARLNEILAKHTGQSLETIAHDTERDNFKSAV 185 Query: 217 EAKKVGLIDVVGGQEE 232 +A+ GL+D V GQ + Sbjct: 186 DAQAYGLVDQVFGQRQ 201 >gi|296394282|ref|YP_003659166.1| endopeptidase Clp [Segniliparus rotundus DSM 44985] gi|296181429|gb|ADG98335.1| Endopeptidase Clp [Segniliparus rotundus DSM 44985] Length = 210 Score = 38.4 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 58/181 (32%), Gaps = 28/181 (15%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D + + ++SPGGS + AI+ +Q V + + Sbjct: 47 TSANDIMAQLLVLESLDPDRDITIYINSPGGSFTSLMAIYDTMQFVHCDIATVCLGQAAS 106 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + A + V + ++ L + + Sbjct: 107 AAAVLLAAGTPGKRAALPNARVLIHQPRIEGGAIRGQATDLEIQAAEI------------ 154 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDV 226 + +S D+ +D +I T EAK G+ID Sbjct: 155 ---------------ERMRRLMEETLSRHTGKTADEVRKDTDRDKILTAQEAKDYGIIDS 199 Query: 227 V 227 V Sbjct: 200 V 200 >gi|269837468|ref|YP_003319696.1| hypothetical protein Sthe_1439 [Sphaerobacter thermophilus DSM 20745] gi|269786731|gb|ACZ38874.1| protein of unknown function DUF114 [Sphaerobacter thermophilus DSM 20745] Length = 288 Score = 38.4 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 63/177 (35%), Gaps = 5/177 (2%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS++++ I D ++ +PGG A E I A+++ + V V Sbjct: 68 IEDSEQVLRAIRLTPEDMPVDVVL---HTPGGLVLAAEQIAEALRRH--KGRVTVFVPHY 122 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 A S G LI+ ++ IV +++G + P + + + + Sbjct: 123 AMSGGTLIALGADEIVMDPDAVLGPVDPQLGSPQGGSYPAASILKALEEPNPNRDDQTLI 182 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 ++ KA++ + + + R + +A+ +GL Sbjct: 183 LGDMARKALEQVYATTYNLLVKHLPPEEADRAARALSGGQWTHDYPIDVEQARGLGL 239 >gi|269123536|ref|YP_003306113.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptobacillus moniliformis DSM 12112] gi|268314862|gb|ACZ01236.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptobacillus moniliformis DSM 12112] Length = 192 Score = 38.4 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 58/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I + +I ++ ++ D + + ++SPGG AG I+ + + Sbjct: 29 IIFLSGEINTEMANAIIAQLLFLNAQDKEKDITMYINSPGGMVTAGFGIYDTMNHISCDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L S A S V L + + + +++ Sbjct: 89 VTVCIGMAASMGAFLLSSGTKGKRFALPNSEVMIHQPLG---GARGQATDIQIVAENILK 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGA 216 + K S++ ++K + Sbjct: 146 TKHKLAEIL---------------------------SKNTGQSFEKIISDTERDNYLSAE 178 Query: 217 EAKKVGLIDVV 227 EA GL+D V Sbjct: 179 EAVAYGLVDKV 189 >gi|325687744|gb|EGD29765.1| peptidase s14, clpp [Streptococcus sanguinis SK72] Length = 232 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 21/196 (10%), Positives = 58/196 (29%), Gaps = 37/196 (18%) Query: 40 RIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95 + + G I ++ +I + L + ++SPGG +A I+ + K+ Sbjct: 20 VLHLNGTIASESWVDDDVTPQIFKNELMSGTGPLTLWINSPGGDVFAAAQIYNMLMDYKD 79 Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 V + +A++ ++ + + ++ + +V Sbjct: 80 DVTVNIDGIAASAASVIAMAGTTVNMSPVAMMMIH--------------------NPMTV 119 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-T 214 K + ++ + ++ + L D W Sbjct: 120 AIGDSKEMEKAIAMLSE------------VKESILNAYEIKTSLSRVQLSHLMDAESWFN 167 Query: 215 GAEAKKVGLIDVVGGQ 230 +A ++G D + + Sbjct: 168 AKKALELGFADSILYE 183 >gi|148655690|ref|YP_001275895.1| endopeptidase Clp [Roseiflexus sp. RS-1] gi|148567800|gb|ABQ89945.1| Endopeptidase Clp [Roseiflexus sp. RS-1] Length = 203 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 26/199 (13%), Positives = 62/199 (31%), Gaps = 33/199 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + ++ ++ + D + ++SPGGS G AI+ ++ + Sbjct: 31 IIMLGTPIDDEVASLIVAQLLYLQHTDPDRDIWFYINSPGGSVRDGLAIYDTMKLISPDV 90 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L A A + + P ++++ + ++ Sbjct: 91 CTVCVGRAGSMATILLAGGARGKRYALPHATIHFHPAGGGAEGYAPDMERIVKELLRIQ- 149 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 L++ ++ S R T Sbjct: 150 -----------------------------ELGNSLLARDTGKTVEEITRDFSRDRFMTAE 180 Query: 217 EAKKVGLIDVVGGQEEVWQ 235 EA++ G ID + ++V Sbjct: 181 EAREYGFIDAILESKKVAA 199 >gi|52145328|gb|AAU29368.1| putative capsid protein [Wolbachia phage WO] Length = 118 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y FV+L++ +R + +K G + G +A ++GL D V E + + V + Sbjct: 13 YEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAIEIGLADGVTTFFEFINNHKSRSVSMT 71 Query: 246 IRKIKDWNPPK 256 ++ + Sbjct: 72 TNELTEEGYEN 82 >gi|15674537|ref|NP_268711.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes M1 GAS] gi|19745547|ref|NP_606683.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes MGAS8232] gi|21909823|ref|NP_664091.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes MGAS315] gi|28896484|ref|NP_802834.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes SSI-1] gi|50913700|ref|YP_059672.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes MGAS10394] gi|71910142|ref|YP_281692.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes MGAS5005] gi|94987959|ref|YP_596060.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes MGAS9429] gi|94989833|ref|YP_597933.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes MGAS10270] gi|94991844|ref|YP_599943.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes MGAS2096] gi|94993720|ref|YP_601818.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes MGAS10750] gi|139474337|ref|YP_001129053.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes str. Manfredo] gi|209558883|ref|YP_002285355.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes NZ131] gi|251781853|ref|YP_002996155.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|306827931|ref|ZP_07461198.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes ATCC 10782] gi|56748646|sp|Q5XDM4|CLPP_STRP6 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|56749808|sp|P69884|CLPP_STRP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|56749809|sp|P69885|CLPP_STRP3 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|56749810|sp|P69886|CLPP_STRP8 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|116243170|sp|Q1JDA9|CLPP_STRPB RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|116243171|sp|Q1JN83|CLPP_STRPC RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|116243172|sp|Q1JID4|CLPP_STRPD RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|116243173|sp|Q1J887|CLPP_STRPF RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|166214714|sp|A2RG72|CLPP_STRPG RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|226706550|sp|B5XJZ8|CLPP_STRPZ RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|13621642|gb|AAK33432.1| putative ATP-dependent protease proteolytic subunit [Streptococcus pyogenes M1 GAS] gi|19747668|gb|AAL97182.1| putative ATP-dependent protease proteolytic subunit [Streptococcus pyogenes MGAS8232] gi|21904009|gb|AAM78894.1| putative ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes MGAS315] gi|28811738|dbj|BAC64667.1| putative ATP-dependent protease proteolytic subunit [Streptococcus pyogenes SSI-1] gi|50902774|gb|AAT86489.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes MGAS10394] gi|71852924|gb|AAZ50947.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes MGAS5005] gi|94541467|gb|ABF31516.1| ATP-dependent endopeptidase clp proteolytic subunit [Streptococcus pyogenes MGAS9429] gi|94543341|gb|ABF33389.1| ATP-dependent endopeptidase clp proteolytic subunit clpP [Streptococcus pyogenes MGAS10270] gi|94545352|gb|ABF35399.1| ATP-dependent endopeptidase clp proteolytic subunit clpP [Streptococcus pyogenes MGAS2096] gi|94547228|gb|ABF37274.1| ATP-dependent endopeptidase clp proteolytic subunit clpP [Streptococcus pyogenes MGAS10750] gi|134272584|emb|CAM30851.1| putative ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes str. Manfredo] gi|209540084|gb|ACI60660.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes NZ131] gi|242390482|dbj|BAH80941.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|304429850|gb|EFM32892.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes ATCC 10782] gi|322411198|gb|EFY02106.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323126667|gb|ADX23964.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 196 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 25/197 (12%), Positives = 58/197 (29%), Gaps = 31/197 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S + + D + + Sbjct: 87 QTIVMGMAASMGTVIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + H ++++++ + ++ W + Sbjct: 145 --------------------------KTRHRLEKILAQNAGKTIKQIHKDAERDYWMSAE 178 Query: 217 EAKKVGLIDVVGGQEEV 233 E G ID + E+ Sbjct: 179 ETLAYGFIDEIMENNEL 195 >gi|325479715|gb|EGC82805.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Anaerococcus prevotii ACS-065-V-Col13] Length = 197 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D S +I ++ + +D + ++SPGG +G AI+ + +K Sbjct: 33 IIFLSGEVRDEISDIIIAQLLFLESEDPDKDIQFYINSPGGVVTSGLAIYDTMNYIKPDV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L S A + +S + Sbjct: 93 STICIGQAASMAAVLLSSGAKGKRFSLPSSNIMIHQPSGGAQGQ---------------- 136 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGA 216 + + + + +++S++ K +D + A Sbjct: 137 --------------ASDIVIQAEQIIKIKERLNKILSDNTGQSLKKIEKDTDRDFAMSAA 182 Query: 217 EAKKVGLIDVV 227 EA + GLID V Sbjct: 183 EALEYGLIDKV 193 >gi|194017679|ref|ZP_03056289.1| YqeZ [Bacillus pumilus ATCC 7061] gi|194010579|gb|EDW20151.1| YqeZ [Bacillus pumilus ATCC 7061] Length = 414 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 3/107 (2%) Query: 30 HVEDNSPHVARIAIRGQIE-DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 + V I I +E + IER ++ + A +I+ +++PGG+ A I Sbjct: 2 TAKSVDQKVHVIPIEDTVEKGLSQFIERSFEQAKSERAKHIILDINTPGGAVDAALEIAD 61 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 I+ + PV V+ A SAG ++ ++ I +G+ ++ Sbjct: 62 TIRA--SDIPVTAFVNHRALSAGAFLALNADQIYMTPNGKMGAAAII 106 >gi|90577735|ref|ZP_01233546.1| hypothetical membrane protein [Vibrio angustum S14] gi|90440821|gb|EAS66001.1| hypothetical membrane protein [Vibrio angustum S14] Length = 462 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 41/268 (15%), Positives = 85/268 (31%), Gaps = 20/268 (7%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLS 74 + ++ V I I+G I S + I ++ +A +I+ + Sbjct: 4 FIQYLLLSLIIFCSPVLAQD-VWVINIKGGIGPATSDYVTREISEAQKN-NAAMIILQVD 61 Query: 75 SPGGSAYAGEAIFRAIQK--------VKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 +PGG + I +AI V A ++ S A+ + A T Sbjct: 62 TPGGLDSSMRQIIQAITVSPVPVATWVGPSGSRAASAGTYILLASHIASMANGTNLGAAT 121 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 + G + P+ D+ S VKSS + S M V++ + Sbjct: 122 PVSIGGGNAGESPFNGDKSDEQSKSEDEVKSSEGSDQSSKQPVAIKSGSAMENKVMNDAA 181 Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQS----LYALG 241 + L +++ + A + +ID + +V + + L Sbjct: 182 AYIESLAKLHNRNAEWAVKAVTESASISAETALQKNVIDFIAQDVAKVVEKSNGRMVKLN 241 Query: 242 VDQ---SIRKIKDWNPPKNYWFCDLKNL 266 + + ++ +++ F L L Sbjct: 242 GVETPIELSNVRFIEREQDWRFKLLSVL 269 >gi|46241461|gb|AAS82930.1| capsid protein [Wolbachia phage WO] Length = 136 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P + ++++ +Q VD Y F++ ++ +R + +K G + G +A ++GL D Sbjct: 1 PHEPMTSESLESLQKEVDRLYEMFLQXIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 59 Query: 226 VV 227 + Sbjct: 60 GM 61 >gi|312984199|ref|ZP_07791545.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus crispatus CTV-05] gi|310894418|gb|EFQ43494.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus crispatus CTV-05] Length = 236 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 51/179 (28%), Gaps = 33/179 (18%) Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 ++ + + + + ++SPGG AG ++ A++K + A Sbjct: 30 NQLNEALSNANGQDITLEINSPGGYIDAGSEMYTALKK---------YPGNVTAQVVGQA 80 Query: 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 A++ I A + S V ++ Sbjct: 81 CSAASWIALAADKVEMSPTAQMMIHRVSGGVEGNVDDF---------------------- 118 Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEE 232 +DS +V L S+ + + + W +A G D + + + Sbjct: 119 -ASAMQSLDSMDQAYVDLYSKRTGLDKQEVYRMMCETTWMNAKQAVDKGFADSIMFEND 176 >gi|240102505|ref|YP_002958814.1| hypothetical protein TGAM_0448 [Thermococcus gammatolerans EJ3] gi|239910059|gb|ACS32950.1| Conserved hypothetical protein [Thermococcus gammatolerans EJ3] Length = 280 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 +EDS+E++ I +D +I +PGG A I RA+++ VI + M Sbjct: 73 VEDSEEILRAIRAAPKDKPIDLII---HTPGGLVLAATQIARALKEHPAETRVIVPHYAM 129 >gi|88763681|gb|ABD49510.1| capsid protein [Wolbachia phage WO] Length = 118 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y FV+L++ +RN+ G + G +A ++GL D V E + + V + Sbjct: 9 YEMFVQLIARNRNLSIQAIKSTEAGLYF-GEKAVEIGLADGVTTFFEFINNHKSRSVSMT 67 Query: 246 IRKIKDWNPPKNYWF 260 ++ + N + Sbjct: 68 TDELIEENYRREILE 82 >gi|306841674|ref|ZP_07474361.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase [Brucella sp. BO2] gi|306288204|gb|EFM59588.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase [Brucella sp. BO2] Length = 738 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%) Query: 51 QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106 QEL I+ + DD ++++ + G A E +F+ QK K + P Sbjct: 36 QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + + + A +P Sbjct: 96 DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARVASDAP 143 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 ++ V++ RL ++ D +++ G T AK +GL+ Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + +++ ++ L ++ ++ W+ + + L + + + G Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257 >gi|254700007|ref|ZP_05161835.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase [Brucella suis bv. 5 str. 513] gi|254705727|ref|ZP_05167555.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase [Brucella pinnipedialis M163/99/10] gi|254710960|ref|ZP_05172771.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase [Brucella pinnipedialis B2/94] gi|256015558|ref|YP_003105567.1| fatty oxidation complex, alpha subunit [Brucella microti CCM 4915] gi|256029342|ref|ZP_05442956.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase [Brucella pinnipedialis M292/94/1] gi|256157534|ref|ZP_05455452.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase [Brucella ceti M490/95/1] gi|256253491|ref|ZP_05459027.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase [Brucella ceti B1/94] gi|261220618|ref|ZP_05934899.1| 3-hydroxyacyl-CoA dehydrogenase [Brucella ceti B1/94] gi|261313148|ref|ZP_05952345.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella pinnipedialis M163/99/10] gi|261318540|ref|ZP_05957737.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella pinnipedialis B2/94] gi|261750490|ref|ZP_05994199.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella suis bv. 5 str. 513] gi|265986341|ref|ZP_06098898.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella pinnipedialis M292/94/1] gi|265996035|ref|ZP_06108592.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella ceti M490/95/1] gi|255998218|gb|ACU49905.1| fatty oxidation complex, alpha subunit [Brucella microti CCM 4915] gi|260919202|gb|EEX85855.1| 3-hydroxyacyl-CoA dehydrogenase [Brucella ceti B1/94] gi|261297763|gb|EEY01260.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella pinnipedialis B2/94] gi|261302174|gb|EEY05671.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella pinnipedialis M163/99/10] gi|261740243|gb|EEY28169.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella suis bv. 5 str. 513] gi|262550332|gb|EEZ06493.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella ceti M490/95/1] gi|264658538|gb|EEZ28799.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella pinnipedialis M292/94/1] Length = 738 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%) Query: 51 QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106 QEL I+ + DD ++++ + G A E +F+ QK K + P Sbjct: 36 QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + + + A +P Sbjct: 96 DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARVASDAP 143 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 ++ V++ RL ++ D +++ G T AK +GL+ Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + +++ ++ L ++ ++ W+ + + L + + + G Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257 >gi|71902983|ref|YP_279786.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes MGAS6180] gi|110816467|sp|Q48V25|CLPP_STRPM RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|71802078|gb|AAX71431.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes MGAS6180] Length = 196 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 25/197 (12%), Positives = 58/197 (29%), Gaps = 31/197 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S + + D + + Sbjct: 87 QTIVMGMAASMGTVIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + H ++++++ + ++ W + Sbjct: 145 --------------------------KTRHRLEKILAQNAGKTIKQIHKDAERDYWMSAE 178 Query: 217 EAKKVGLIDVVGGQEEV 233 E G ID + E+ Sbjct: 179 ETLTYGFIDEIMENNEL 195 >gi|299535801|ref|ZP_07049122.1| hypothetical protein BFZC1_07248 [Lysinibacillus fusiformis ZC1] gi|298729001|gb|EFI69555.1| hypothetical protein BFZC1_07248 [Lysinibacillus fusiformis ZC1] Length = 442 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERISRDDSAT 67 K R + LV ++ S V + I ++E +ER + + +++A Sbjct: 3 KRRILSYLLVIWMTFLLAFPLTSAFASNKVYHVLIHNEVERGLHAFLERAFKEAEENNAE 62 Query: 68 ALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 A+I+ + +PGG A I + + I +++ A SAG ++ ++ I Sbjct: 63 AIILEIHTPGGFVNAANDIAMLMDAT--QIRTIAYINKDAHSAGAFLALHADEIYMVPNG 120 Query: 128 LVGSIGVL 135 +G+ V+ Sbjct: 121 TIGAAAVI 128 >gi|163844919|ref|YP_001622574.1| hypothetical protein BSUIS_B0785 [Brucella suis ATCC 23445] gi|163675642|gb|ABY39752.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] Length = 738 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%) Query: 51 QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106 QEL I+ + DD ++++ + G A E +F+ QK K + P Sbjct: 36 QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + + + A +P Sbjct: 96 DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARVASDAP 143 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 ++ V++ RL ++ D +++ G T AK +GL+ Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + +++ ++ L ++ ++ W+ + + L + + + G Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257 >gi|161620852|ref|YP_001594738.1| Fatty acid oxidation complex alpha subunit [Brucella canis ATCC 23365] gi|254703128|ref|ZP_05164956.1| Fatty acid oxidation complex alpha subunit [Brucella suis bv. 3 str. 686] gi|260567942|ref|ZP_05838411.1| FadB protein [Brucella suis bv. 4 str. 40] gi|261753748|ref|ZP_05997457.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella suis bv. 3 str. 686] gi|161337663|gb|ABX63967.1| Fatty acid oxidation complex alpha subunit [Brucella canis ATCC 23365] gi|260154607|gb|EEW89688.1| FadB protein [Brucella suis bv. 4 str. 40] gi|261743501|gb|EEY31427.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella suis bv. 3 str. 686] Length = 738 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%) Query: 51 QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106 QEL I+ + DD ++++ + G A E +F+ QK K + P Sbjct: 36 QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + + + A +P Sbjct: 96 DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARVASDAP 143 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 ++ V++ RL ++ D +++ G T AK +GL+ Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + +++ ++ L ++ ++ W+ + + L + + + G Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257 >gi|6723193|dbj|BAA89605.1| capsid protein [Bacteriophage WO] gi|6723205|dbj|BAA89611.1| capsid protein [Bacteriophage WO] Length = 113 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Y FV+L++ +R + +K G + G +A ++GL D V E Sbjct: 13 YEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFIN 61 >gi|225629265|ref|ZP_03787298.1| Fatty acid oxidation complex subunit alpha [Brucella ceti str. Cudo] gi|260167570|ref|ZP_05754381.1| fatty oxidation complex, alpha subunit [Brucella sp. F5/99] gi|261756990|ref|ZP_06000699.1| multifunctional fatty acid oxidation complex subunit alpha [Brucella sp. F5/99] gi|225615761|gb|EEH12810.1| Fatty acid oxidation complex subunit alpha [Brucella ceti str. Cudo] gi|261736974|gb|EEY24970.1| multifunctional fatty acid oxidation complex subunit alpha [Brucella sp. F5/99] Length = 738 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%) Query: 51 QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106 QEL I+ + DD ++++ + G A E +F+ QK K + P Sbjct: 36 QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + + + A +P Sbjct: 96 DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARVASDAP 143 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 ++ V++ RL ++ D +++ G T AK +GL+ Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + +++ ++ L ++ ++ W+ + + L + + + G Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257 >gi|149915902|ref|ZP_01904426.1| hypothetical protein RAZWK3B_07479 [Roseobacter sp. AzwK-3b] gi|149810225|gb|EDM70071.1| hypothetical protein RAZWK3B_07479 [Roseobacter sp. AzwK-3b] Length = 275 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 85/281 (30%), Gaps = 42/281 (14%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVAR-------------------- 40 MEF L I + ++ ++ ++ ++ E + R Sbjct: 1 MEFSLSTIFFLFFIVMILQPVLMGRIFAFRREQAIRAIERKRRSRVITMIHRQERRSFFG 60 Query: 41 IAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 + + I ED+Q +I I+ + + L +PGG A I RA++ K Sbjct: 61 VNVSRMIDLEDAQSIISAIKATPANTPID---LVLHTPGGLVLAAMQIARAVETHPA-KV 116 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 + + + A I++ + L + + I+ V Sbjct: 117 TVFVPIYAMSGGTLIALAADEIVMGEFSMLGPIDPQIMGISAASIIAARDAKPIEHVSDV 176 Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-----W 213 + + ++ + R + L+ G Sbjct: 177 ALVLADVSDKAIAQVVRGAVEIMTPRME----------RGKAEELAKTLASGTWTHDYAL 226 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 T AEA+++GL VG E+ L L + ++ P Sbjct: 227 TPAEARELGLEVTVGMPSEILD-LMKLFPAPVKQSAVEFLP 266 >gi|148558630|ref|YP_001257739.1| fatty oxidation complex subunit alpha [Brucella ovis ATCC 25840] gi|148369915|gb|ABQ62787.1| fatty oxidation complex, alpha subunit [Brucella ovis ATCC 25840] Length = 738 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%) Query: 51 QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106 QEL I+ + DD ++++ + G A E +F+ QK K + P Sbjct: 36 QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + + + A +P Sbjct: 96 DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARVASDAP 143 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 ++ V++ RL ++ D +++ G T AK +GL+ Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + +++ ++ L ++ ++ W+ + + L + + + G Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257 >gi|306846011|ref|ZP_07478578.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase [Brucella sp. BO1] gi|306273646|gb|EFM55491.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase [Brucella sp. BO1] Length = 738 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%) Query: 51 QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106 QEL I+ + DD ++++ + G A E +F+ QK K + P Sbjct: 36 QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + + + A +P Sbjct: 96 DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARVASDAP 143 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 ++ V++ RL ++ D +++ G T AK +GL+ Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + +++ ++ L ++ ++ W+ + + L + + + G Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257 >gi|23500527|ref|NP_699967.1| fatty oxidation complex subunit alpha [Brucella suis 1330] gi|23464160|gb|AAN33972.1| fatty oxidation complex, alpha subunit [Brucella suis 1330] Length = 738 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%) Query: 51 QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106 QEL I+ + DD ++++ + G A E +F+ QK K + P Sbjct: 36 QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + + + A +P Sbjct: 96 DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARVASDAP 143 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 ++ V++ RL ++ D +++ G T AK +GL+ Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + +++ ++ L ++ ++ W+ + + L + + + G Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257 >gi|6723219|dbj|BAA89618.1| capsid protein [Bacteriophage WO] Length = 118 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y F++L++ +R + +K G + G +A ++GL D V E + + V + Sbjct: 13 YEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFINNHKSRSVSMT 71 Query: 246 IRKIKDWNPPK 256 ++ D Sbjct: 72 TNELPDEGYEN 82 >gi|116511469|ref|YP_808685.1| ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis subsp. cremoris SK11] gi|123320556|sp|Q030V9|CLPP_LACLS RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|116107123|gb|ABJ72263.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lactococcus lactis subsp. cremoris SK11] Length = 199 Score = 38.4 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 47/155 (30%), Gaps = 2/155 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 30 IIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S + + D V+ + +K+ Sbjct: 90 LTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGQGTQQTDMAIVAEQLLKT 149 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + D L Sbjct: 150 RKRLEQILADNSNRSLEQIHKDAERDHWMDAKETL 184 >gi|294853433|ref|ZP_06794105.1| enoyl-CoA hydratase [Brucella sp. NVSL 07-0026] gi|294819088|gb|EFG36088.1| enoyl-CoA hydratase [Brucella sp. NVSL 07-0026] Length = 738 Score = 38.4 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%) Query: 51 QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106 QEL I+ + DD ++++ + G A E +F+ QK K + P Sbjct: 36 QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + + + A +P Sbjct: 96 DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARVASDAP 143 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 ++ V++ RL ++ D +++ G T AK +GL+ Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + +++ ++ L ++ ++ W+ + + L + + + G Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257 >gi|255573147|ref|XP_002527503.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis] gi|223533143|gb|EEF34901.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis] Length = 308 Score = 38.4 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 20/195 (10%), Positives = 54/195 (27%), Gaps = 40/195 (20%) Query: 53 LIERIERISRDDSATALIVSLSS---------PGGSAYAGEAIFRAIQKVKNRKPVITEV 103 L+ + + DDS+ + + ++S GS AI A+ K+ + Sbjct: 115 LVAQFMYLDYDDSSKPIYLYINSSGTQNEKMETVGSETEAYAIADAMFYCKSTVYTVNCG 174 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 + L A + + Sbjct: 175 MAYGQAGMLLSLGAKGYRALQPNASTKLYLPKVNRSSGAVIDMWIKAK------------ 222 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVG 222 +D++ +++ L+++ ++ + + + EA + G Sbjct: 223 -----------------ELDANTEYYIDLLAKGTGKTKEEINKDIQRPKYFNSKEAIEYG 265 Query: 223 LIDVVGG-QEEVWQS 236 L D + ++ ++ Sbjct: 266 LADKIVDSSDDAFEK 280 >gi|158320276|ref|YP_001512783.1| hypothetical protein Clos_1241 [Alkaliphilus oremlandii OhILAs] gi|158140475|gb|ABW18787.1| protein of unknown function DUF107 [Alkaliphilus oremlandii OhILAs] Length = 430 Score = 38.4 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 28 SSHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSATALIVSLSSPGGSAYAGEA 85 ++ + + +V I IRG+I + L + + D +ATA+I + + GG + E Sbjct: 20 AASGDQGAGNVYVIPIRGEITPAMHLYVKHNLSIVESDKNATAVIFEIDTYGGRIDSSEQ 79 Query: 86 IFRAIQKVK 94 I + I Sbjct: 80 IGKLILNTN 88 >gi|33240370|ref|NP_875312.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|67460522|sp|Q7VC22|CLPP1_PROMA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; AltName: Full=Endopeptidase Clp 1 gi|33237897|gb|AAP99964.1| Protease subunit of ATP-dependent Clp protease [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 196 Score = 38.4 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 57/180 (31%), Gaps = 31/180 (17%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + ++ ++ + +D + + ++SPGGS Y G IF IQ +K + + Sbjct: 38 SANRIVAQLLFLEAEDPEKDIFLYINSPGGSVYDGFGIFDTIQHIKPDVHTVCVGLAASM 97 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 A L + A + + S + L + + + + K Sbjct: 98 GAFLLCAGAKGKRSSLQHSRIMIHQPLG---GARGQATDIRIQADEILFLKQK------- 147 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 +S P K +D + + +EA G+ID V Sbjct: 148 --------------------LNTELSNRTGQPLSKIAEDTDRDFYMSPSEAISYGIIDNV 187 >gi|316936707|gb|ADU60348.1| capsid protein [Wolbachia phage WO] Length = 140 Score = 38.4 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 + +++ +Q VD Y FV+L++ +R + +K G + G +A ++GL D Sbjct: 2 HMEPMTSESLGSLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 60 Query: 226 VV 227 V Sbjct: 61 GV 62 >gi|150399941|ref|YP_001323708.1| hypothetical protein Mevan_1198 [Methanococcus vannielii SB] gi|150012644|gb|ABR55096.1| protein of unknown function DUF114 [Methanococcus vannielii SB] Length = 283 Score = 38.4 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 4/109 (3%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+E++ I D ++ +PGG A E I A+++ K + VI + M Sbjct: 67 IEDSEEILRAIRMTPGDMPIDLIL---HTPGGLVLASEQIATALKEHKAKTTVIIPHYAM 123 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 + + A II+ + + QYP + + Sbjct: 124 -SGGSLIALSADEIIMDKNAVMGPVDPQVGQYPAASIISAINTKYVDEL 171 >gi|224001754|ref|XP_002290549.1| 3,2-TRANS-ENOYL-COA isomerase [Thalassiosira pseudonana CCMP1335] gi|220973971|gb|EED92301.1| 3,2-TRANS-ENOYL-COA isomerase [Thalassiosira pseudonana CCMP1335] Length = 315 Score = 38.4 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 80/236 (33%), Gaps = 19/236 (8%) Query: 2 EFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS------QELIE 55 ++ L +++T V+ SL + ++ + VA + + +S + + Sbjct: 16 KYCLSRVQTPSVLASLFSTASAKDDFTHISVNEESGVAMLMLNRPPANSLSLEMNEAIST 75 Query: 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 I++I + ++I++ S+P S ++ + + + S Sbjct: 76 SIKQIEANPKVQSVIIASSNP--SIFSAGLDIAELVEPDKDRLPKFWNSLQQVYLDLYGS 133 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 + I + + Y + + + P +N + Sbjct: 134 RLATIAAIQGHAPAAGCMLAMACDYRIMCAGHGDDEVD----GKKRRKHVPTIGLNETQL 189 Query: 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 ++ W +L+ + + L+ G ++ +A KVGL+D VG ++ Sbjct: 190 ------GIAAPPWMGQLMVRTIGFRMAE-RALALGTLFQPTDALKVGLVDEVGNEQ 238 >gi|52425902|ref|YP_089039.1| ATP-dependent Clp protease proteolytic subunit [Mannheimia succiniciproducens MBEL55E] gi|60389529|sp|Q65RF6|CLPP_MANSM RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|52307954|gb|AAU38454.1| ClpP protein [Mannheimia succiniciproducens MBEL55E] Length = 193 Score = 38.4 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED+ ++ ++ + ++ + + ++SPGGS AG AI+ +Q +K Sbjct: 29 VIFLSGEVEDNMANLIVAQLLFLESENPEKDINLYINSPGGSVTAGMAIYDTMQFIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A+ A + V L + Sbjct: 89 RTLCVGQACSMGAFLLAGGAAGKRAALPHARVMIHQPLGGFRGQ---------------- 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 +Q+ + ++ P++ + Sbjct: 133 --------------ASDIQIHAQEILKIKQTLNERLAFHTGQPFEVIERDTDRDNFMSAE 178 Query: 217 EAKKVGLIDVV 227 +AK GLID V Sbjct: 179 DAKNYGLIDSV 189 >gi|46446077|ref|YP_007442.1| ATP-dependent Clp protease proteolytic subunit [Candidatus Protochlamydia amoebophila UWE25] gi|67460481|sp|Q6ME32|CLPP1_PARUW RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; AltName: Full=Endopeptidase Clp 1 gi|46399718|emb|CAF23167.1| probable ATP-dependent Clp protease proteolytic subunit [Candidatus Protochlamydia amoebophila UWE25] Length = 206 Score = 38.4 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 55/188 (29%), Gaps = 27/188 (14%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + E+I ++ + D ++ ++SPGG+ +G AI+ I+ + + + + Sbjct: 44 GSASEIIRKLWYLELTDPGKPILFVINSPGGAVDSGFAIWDQIKMITSPVTTLVTGLAAS 103 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 + + + A S + L D + + Sbjct: 104 MGSILSLCASPGRRFATPHSRIMIHQPLLSGVIKGQATDLEIQAKE-------------- 149 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 ++ + V + + T EA + GL+D V Sbjct: 150 -------------MLKTRNGLIEIYVQATGKNFAAIEKAIDRDTWMTAQEALEFGLLDKV 196 Query: 228 GGQEEVWQ 235 E + Sbjct: 197 INSFEEIE 204 >gi|124025671|ref|YP_001014787.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus marinus str. NATL1A] gi|123960739|gb|ABM75522.1| Clp protease subunit [Prochlorococcus marinus str. NATL1A] Length = 205 Score = 38.4 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 60/180 (33%), Gaps = 31/180 (17%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + ++ ++ + DD + + ++SPGGS Y G IF +Q VK + + Sbjct: 47 SANRIVAQLLFLEADDPDKDIFLYINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASM 106 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 A L + A + S + L + + + + K Sbjct: 107 GAFLLCAGAKGKRSSLLHSRIMIHQPLG---GARGQASDIRIQADEILFIKDK------- 156 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 + +S+ P ++ +D + + +EA + G+ID V Sbjct: 157 --------------------LNKELSDRTGQPIERIREDTDRDFYMSPSEAIEYGIIDNV 196 >gi|88809170|ref|ZP_01124679.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. WH 7805] gi|88787112|gb|EAR18270.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. WH 7805] Length = 200 Score = 38.4 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 60/179 (33%), Gaps = 30/179 (16%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + L+ ++ + +DS + + ++SPGGS AG AI+ IQ VK+ I + Sbjct: 44 ANSLVAQMLYLDSEDSGKPIYLYINSPGGSVTAGLAIYDTIQYVKSDVVTICVGLAASMG 103 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L + +A S + L + ++ Sbjct: 104 AFLLAAGTKGKRLALPHSRIMIHQPLGGTAQRQASDIEIEAR------------------ 145 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 + R ++E ++K +D + + EA GLID V Sbjct: 146 -----------EILRMKEMLNRSMAEMSGQSFEKIEKDTDRDYFLSSQEAMDYGLIDRV 193 >gi|311350272|gb|ADP92336.1| capsid protein [Wolbachia phage WO] Length = 98 Score = 38.4 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 V+L++ +R + +K G + G +A ++GL D V E Sbjct: 1 EMLVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFINK 49 >gi|206602656|gb|EDZ39137.1| Peptidase S14, ClpP [Leptospirillum sp. Group II '5-way CG'] Length = 203 Score = 38.4 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 56/180 (31%), Gaps = 31/180 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 +I ++ + +D++ + + ++SPGG AG AI+ +Q +K I + A Sbjct: 43 VIAQLLFLEAEDASKDINLYINSPGGVVTAGLAIYDTMQYIKPDVSTICVGQAASMGAVL 102 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A A + + L ++ Sbjct: 103 LAAGADGKRFALPNARIMIHQPLGGVQGQATEIEIHARE--------------------- 141 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQE 231 + ++++ K +D + + +AK GL+D V Sbjct: 142 ---------ILKMREHLNGILAKHTKQSLAKVAQDTDRDYFLSAEDAKAYGLVDSVISSH 192 >gi|171780217|ref|ZP_02921121.1| hypothetical protein STRINF_02005 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281565|gb|EDT47000.1| hypothetical protein STRINF_02005 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 196 Score = 38.4 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 23/192 (11%), Positives = 58/192 (30%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G ++D + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 27 IIMLTGPVDDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S + + D + + Sbjct: 87 QTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLL-- 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + ++++++ +K ++ W + Sbjct: 145 --------------------------KTRQNLEQILADNSGQSLEKVHADAERDNWMSAQ 178 Query: 217 EAKKVGLIDVVG 228 E + G ID + Sbjct: 179 ETLEYGFIDEIM 190 >gi|120403081|ref|YP_952910.1| enoyl-CoA hydratase [Mycobacterium vanbaalenii PYR-1] gi|119955899|gb|ABM12904.1| Enoyl-CoA hydratase/isomerase [Mycobacterium vanbaalenii PYR-1] Length = 225 Score = 38.4 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 ++ GR EA K+GL+D + + V+ + A + + K+ + D+ Sbjct: 160 DLVFSGRFVDAREALKLGLVDELVAPDTVYDAALAWAGRFADYPPEVLAAAKSSFARDM 218 >gi|312862980|ref|ZP_07723219.1| endopeptidase Clp [Streptococcus vestibularis F0396] gi|322517397|ref|ZP_08070271.1| ATP-dependent Clp protease, protease subunit [Streptococcus vestibularis ATCC 49124] gi|311101475|gb|EFQ59679.1| endopeptidase Clp [Streptococcus vestibularis F0396] gi|322123995|gb|EFX95551.1| ATP-dependent Clp protease, protease subunit [Streptococcus vestibularis ATCC 49124] Length = 196 Score = 38.4 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 26/197 (13%), Positives = 63/197 (31%), Gaps = 31/197 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 27 IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S + + D + +K+ Sbjct: 87 QTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + ++++++ +K V ++ W + Sbjct: 147 ----------------------------RNNLEQILADNSGQSIEKVHVDAERDNWMSAQ 178 Query: 217 EAKKVGLIDVVGGQEEV 233 E + G ID + ++ Sbjct: 179 ETLEYGFIDEIMTNNQL 195 >gi|305667504|ref|YP_003863791.1| hypothetical protein FB2170_14693 [Maribacter sp. HTCC2170] gi|88709552|gb|EAR01785.1| hypothetical protein FB2170_14693 [Maribacter sp. HTCC2170] Length = 257 Score = 38.4 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 26/238 (10%), Positives = 77/238 (32%), Gaps = 30/238 (12%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 +EL + + D +I++ SA I+ ++ + I + + Sbjct: 31 KELRQTFQEFKNDPEVKGVILTGQPHYFSAGL-----DLIELIQYNEHQINDFFGDFGTL 85 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 ++ +++A T + G + ++ + + + + Sbjct: 86 FQELAQFPKPLISAITGHSPAGGCVLAVTCDNRYMA--KGDQYVIGLNEVAVNIQISQNL 143 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 M + + + Y + +G++ +G EA GL+D + Sbjct: 144 TEAYAFWMGEGLANRY--------------------ILEGKLLSGKEAVSAGLVDDLVPL 183 Query: 231 EEVW--QSLYALGVDQSIRKI-KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQ 285 E+V L ++ ++I + + + ++ L++ L + +++ Sbjct: 184 EQVLGHAELKMQQYMKADQEIWVNTKKKLRKHWLAKLDQDPNTSLKEAATLWWKPEIR 241 >gi|312864716|ref|ZP_07724947.1| endopeptidase Clp [Streptococcus downei F0415] gi|311099843|gb|EFQ58056.1| endopeptidase Clp [Streptococcus downei F0415] Length = 196 Score = 38.4 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 60/197 (30%), Gaps = 31/197 (15%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G +ED + +I ++ + DS+ + + +++PGGS AG AI + +K+ Sbjct: 27 IVMLTGPVEDNMANSIIAQLLFLDAQDSSKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + + Sbjct: 87 QTIVMGMAASMGTIIASSGAKGKRFMLPHAEYMIHQPMGGTGGGTQQSDMAIAAEHLL-- 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + ++++++ K ++ W T Sbjct: 145 --------------------------QTRETLEKILADNSGQTLKKIHADAERDNWMTAK 178 Query: 217 EAKKVGLIDVVGGQEEV 233 E G ID + E+ Sbjct: 179 ETLDYGFIDEIMENNEL 195 >gi|150397489|ref|YP_001327956.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium medicae WSM419] gi|150029004|gb|ABR61121.1| Endopeptidase Clp [Sinorhizobium medicae WSM419] Length = 195 Score = 38.4 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 38/195 (19%) Query: 41 IAIRGQIED--SQELIERI--ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 I I G I +Q++ ++ + DD + ++SPGG +G++I I+ VK + Sbjct: 30 IFIYGNITQELAQKVCSQLVALAAASDDDIR---IFVNSPGGHVESGDSIHDMIKFVKPK 86 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 I +A A ++ + + + ++ Sbjct: 87 VWTIGTGWVASAGALIYVAAPKEQRLCLPNTRFLLHQPSGGTRGMASDIE---------- 136 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG- 215 + + R+ SE+ P +K +D W G Sbjct: 137 --------------------IQAREIIKMNERLNRIFSEATGQPVEKIAKDTDRDYWLGA 176 Query: 216 AEAKKVGLIDVVGGQ 230 EAK GL+ + Sbjct: 177 EEAKAYGLVSRIVTS 191 >gi|46241425|gb|AAS82912.1| capsid protein [Wolbachia phage WO] Length = 127 Score = 38.4 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Y FV+L++ +R + +K G + G +A ++GL D V E Sbjct: 7 YEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFINK 56 >gi|85713380|ref|ZP_01044388.1| Periplasmic serine protease, ClpP family protein [Idiomarina baltica OS145] gi|85692796|gb|EAQ30786.1| Periplasmic serine protease, ClpP family protein [Idiomarina baltica OS145] Length = 72 Score = 38.4 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 6/78 (7%) Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 ++ G +WTG EA ++GL+D V + + I K++ + Sbjct: 1 MATGEVWTGTEALELGLVDEVITSD---AWMLKQLDTHRILKVEYSIKKP---LSERFAK 54 Query: 267 SISSLLEDTIPLMKQTKV 284 ++L+ ++ V Sbjct: 55 GAATLVNTLKSSFTRSDV 72 >gi|269964374|ref|ZP_06178616.1| hypothetical protein VMC_00460 [Vibrio alginolyticus 40B] gi|269830871|gb|EEZ85088.1| hypothetical protein VMC_00460 [Vibrio alginolyticus 40B] Length = 458 Score = 38.4 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 74/241 (30%), Gaps = 11/241 (4%) Query: 36 PHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI-QK 92 V + ++G I S L IE + + +I+ + +PGG A I AI Sbjct: 21 NTVWIVPVKGAIGPATSDYLSREIEEAQLN-GVSLVILEMDTPGGLDSAMRDIIHAITTS 79 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL--FQYPYVKPFLDKLGV 150 + AASAG I AS++ AE + +G+ + P D Sbjct: 80 STPIATWVGPSGSRAASAGTYILLASHVAAMAEATNLGAATPVALGGAPQPPSSDDGKDQ 139 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 + + + ++ + + + RN + + +S+ Sbjct: 140 NAEETSEGTNEGSEKVPAKTAMEKKVINDARAYIKGLAKLH----GRNAEWAE-KAVSEA 194 Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270 EA ++ +ID + E + + + W + Sbjct: 195 ASLDATEALELNVIDYIANSPEDLVKAIDGQTVKVNNRDVTLSLENPVWIERTPDWRAEM 254 Query: 271 L 271 L Sbjct: 255 L 255 >gi|149882820|ref|YP_001294799.1| Clp protease [Microbacterium phage Min1] gi|148763451|gb|ABR10469.1| Clp protease [Microbacterium phage Min1] Length = 399 Score = 38.4 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 66/203 (32%), Gaps = 44/203 (21%) Query: 31 VEDNSPHVARIAIRGQIEDS-------QELIERIERISRDDSATALIVSLSSPGGSAYAG 83 + ++P A + I +I +S + L++ I + + V ++SPGG+A+ G Sbjct: 22 GDGDAPSTADVYIYDEIGESWWGGIAPKALVDEITAL----DVAEMTVHINSPGGAAWDG 77 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 I A++ K + V+ L + A+++I ++ + G Sbjct: 78 ITIMNALRAHKAQVHVVV---------DGLAASAASVIAMGGDTITMNRGAQMMIHDASG 128 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 + +++V + K + ++ Sbjct: 129 GVWGNAAEVEAVATILHKLS-----------------------DSIADTYAARTGGTREQ 165 Query: 204 TLVLSDGRIW-TGAEAKKVGLID 225 + W T EA GL D Sbjct: 166 WRAVMKDEAWYTAEEAVAAGLAD 188 >gi|114770186|ref|ZP_01447724.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase [alpha proteobacterium HTCC2255] gi|114549023|gb|EAU51906.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase [alpha proteobacterium HTCC2255] Length = 727 Score = 38.4 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 82/264 (31%), Gaps = 26/264 (9%) Query: 35 SPHVARIAIRGQ-----IEDSQELIER---IERISRDDSATALIVSL--SSPGGSAYAGE 84 + VA I+ I D Q L + I++ D+ +I++ S+ G Sbjct: 9 NDGVAVISWNTPTRNMNIMDLQSLSDLEIKIDKALSDNDVIGVIITSGKSNFSGGL---- 64 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I+++ + + + T + G+ + KP Sbjct: 65 -----------DLGCISKIPGIISENYQENLFKGLKVFTNLTRKIELAGINNKDTGGKPI 113 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-K 203 + L V + F NPK D++ + R I + Sbjct: 114 VCTLDGDALGVGFGIALSCHKIFVSDNPKGKIGFPDILIGMPPVAGSISRLIRKINKELC 173 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 +L +G A K GL+D + +E+ + I + Y D Sbjct: 174 ISLLQNGEYINFENAIKHGLVDEMKSSDELIPFAMQWIKSNLKKNIIKPWDMERYSSEDK 233 Query: 264 KNLSISSLLEDTIPLMKQTKVQGL 287 SSL ++ K++ ++G+ Sbjct: 234 IPKKFSSLEDEIKQANKKSSLKGI 257 >gi|323703643|ref|ZP_08115286.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfotomaculum nigrificans DSM 574] gi|323531415|gb|EGB21311.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfotomaculum nigrificans DSM 574] Length = 195 Score = 38.1 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 58/191 (30%), Gaps = 31/191 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G I+D + +I + + +D + + ++SPGG AG AI+ +Q +K Sbjct: 30 IIFIGGPIDDHIANLVIAQFLFLEAEDPEKDIHLYINSPGGVVTAGLAIYDTMQYIKPAV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A A + + L Sbjct: 90 STICLGQAASMGSFLLAAGAKGKRYALPQARIMIHQPLG--------------------- 128 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 S+H L +R+ D + E Sbjct: 129 GVQGQATDIDIHAREILRMREILNERLSHHTGQPLEKIARDTERD--------FFMSAEE 180 Query: 218 AKKVGLIDVVG 228 AKK G+ID V Sbjct: 181 AKKYGIIDEVM 191 >gi|254720097|ref|ZP_05181908.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase [Brucella sp. 83/13] gi|265985103|ref|ZP_06097838.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella sp. 83/13] gi|306839064|ref|ZP_07471884.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase [Brucella sp. NF 2653] gi|264663695|gb|EEZ33956.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella sp. 83/13] gi|306405887|gb|EFM62146.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase [Brucella sp. NF 2653] Length = 738 Score = 38.1 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%) Query: 51 QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106 QEL I+ + DD ++++ + G A E +F+ QK K + P Sbjct: 36 QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVKTLF 95 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + + + A +P Sbjct: 96 DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARVASDAP 143 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 ++ V++ RL ++ D +++ G T AK +GL+ Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTTGSSLTAQRAKAMGLVTE 198 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + +++ ++ L ++ ++ W+ + + L + + + G Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257 >gi|262200926|ref|YP_003272134.1| enoyl-CoA hydratase/isomerase [Gordonia bronchialis DSM 43247] gi|262084273|gb|ACY20241.1| Enoyl-CoA hydratase/isomerase [Gordonia bronchialis DSM 43247] Length = 312 Score = 38.1 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 61/231 (26%), Gaps = 21/231 (9%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF---RAIQKVKNRKPVITEVHEMAA 108 L R D + +++ + SA I R + H + Sbjct: 57 SLDAAFRRAVDDPAIKVIVLRANGKHFSAGH--DIGTPERDFDTFYPNVATLYWDHTDRS 114 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD--KLGVSIKSVKSSPMKAEPSP 166 A ++ + V + + L + +S P Sbjct: 115 GADQRLAREMEVYVGMCRRWRDMPKPVIAQVHGACIAGGLMLAWICDFIVASDDAFFSDP 174 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 + + V+ +L G +T A+A + G+++ Sbjct: 175 VARMGIPGVEYFAHAYALGTRRAK--------------EILFTGERFTAAQAAEWGMVNH 220 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIP 277 V ++E+ + A+ + I+ K + + + ++ Sbjct: 221 VVPRDELAAKVDAIAGQIASMPIQGLMLSKKAVNICEDQMGLRNAMDSVFG 271 >gi|282899048|ref|ZP_06307029.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505] gi|281195964|gb|EFA70880.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505] Length = 201 Score = 38.1 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 60/182 (32%), Gaps = 31/182 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGGS AG IF ++ ++ I + A Sbjct: 42 IVAQLLFLDSEDPEKDIYMYINSPGGSVTAGMGIFDTMKNIRPNVCTICTGLAASMGAFL 101 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + ++ S + L + + + + + K Sbjct: 102 LSAGTKGKRMSLPHSRIMIHQPLG---GAQGQATDIEIQAREILYHKRKLNEYL------ 152 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQE 231 +E P+D+ ++ + + EA++ GLID V + Sbjct: 153 ---------------------AEHTGQPFDRIAEDTERDFFMSPQEAREYGLIDQVIDRH 191 Query: 232 EV 233 Sbjct: 192 AA 193 >gi|218297188|ref|ZP_03497850.1| protein of unknown function DUF114 [Thermus aquaticus Y51MC23] gi|218242465|gb|EED09004.1| protein of unknown function DUF114 [Thermus aquaticus Y51MC23] Length = 278 Score = 38.1 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 64/183 (34%), Gaps = 21/183 (11%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 I+DS++++ I D + + + L +PGG A E I A+ + + V V Sbjct: 68 IDDSEQVLRAIR--LTDKNVP-IDLVLHTPGGLVLAAEQIAEALLRHPAK--VTVFVPHY 122 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 A S G LI+ A++ IV E +++G + L L K Sbjct: 123 AMSGGTLIALAADEIVMDENAVLGPVDPQLGQYPAASVLKVL----------EKKPIQEI 172 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA------EAKK 220 + A + + L ++ + WT +A++ Sbjct: 173 DDQTLILADVAEKALKQVKATVKNLLKKHMPEDRAEEVAHILSQGTWTHDYPIDVAQARE 232 Query: 221 VGL 223 +GL Sbjct: 233 LGL 235 >gi|15672655|ref|NP_266829.1| ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis subsp. lactis Il1403] gi|281491135|ref|YP_003353115.1| ATP-dependent endopeptidase Clp proteolytic subunit ClpP [Lactococcus lactis subsp. lactis KF147] gi|18202801|sp|Q9CHQ3|CLPP_LACLA RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|12723580|gb|AAK04771.1|AE006300_6 ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis subsp. lactis Il1403] gi|281374885|gb|ADA64404.1| ATP-dependent endopeptidase Clp, proteolytic subunit ClpP [Lactococcus lactis subsp. lactis KF147] gi|326406161|gb|ADZ63232.1| ATP-dependent Clp protease, protease subunit [Lactococcus lactis subsp. lactis CV56] Length = 199 Score = 38.1 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 47/155 (30%), Gaps = 2/155 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 30 IIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 89 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S + + D V+ + +K+ Sbjct: 90 QTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGTGQGTQQTDMAIVAEQLLKT 149 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + D L Sbjct: 150 RKRLEQILADNSNRSLEQIHKDAERDHWMDAKETL 184 >gi|256028827|ref|ZP_05442661.1| protease IV [Fusobacterium sp. D11] Length = 158 Score = 38.1 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 4/127 (3%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 F+L K K + +SL + V F+ + VED ++ ++I + + L++ +E + Sbjct: 27 FILGKFKNKDK-ISLKGVKTVVFNLNELVEDYM--ISTVSINKTL-SHEALLKALENLVN 82 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D +I+ + S E I +K+ K +I + + A+ I + Sbjct: 83 DKKIEKIIIDVDEVDLSRVHIEEIKEIFEKLSVNKEIIAIGTTFDEYSYQVSLLANKIYM 142 Query: 123 AAETSLV 129 Sbjct: 143 LNTKQSC 149 >gi|254171900|ref|ZP_04878576.1| periplasmic serine protease [Thermococcus sp. AM4] gi|214033796|gb|EEB74622.1| periplasmic serine protease [Thermococcus sp. AM4] Length = 280 Score = 38.1 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 +EDS+E++ I +D +I +PGG A I RA+++ VI + M Sbjct: 73 VEDSEEILRAIRAAPKDKPIDLII---HTPGGLVLAATQIARALKEHPAETRVIVPHYAM 129 >gi|56269518|gb|AAH87510.1| LOC496087 protein [Xenopus laevis] Length = 243 Score = 38.1 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+DS ++ ++ + + + + + ++SPGGS AG AI+ +Q + N Sbjct: 56 IICVMGPIDDSLSSVVVAQLLFLQSESNKKPIHMYINSPGGSVTAGLAIYDTMQYILN-- 113 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I A++ + A+ + I + + + + + + Sbjct: 114 -PICTWCVGQAASMGSLLLAAGSSGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEILK 172 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216 + ++ P + + R + Sbjct: 173 LK---------------------------KQINEIYAKHTRQPLSVIESVMERDRYMSPT 205 Query: 217 EAKKVGLIDVV 227 EA++ G++D V Sbjct: 206 EAQEFGILDKV 216 >gi|33598513|ref|NP_886156.1| enoyl-CoA hydratase [Bordetella parapertussis 12822] gi|33574642|emb|CAE39293.1| putative enoyl-CoA hydratase/isomerase [Bordetella parapertussis] Length = 270 Score = 38.1 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 64/224 (28%), Gaps = 25/224 (11%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 +EL + RD S A+++S + SA +++ ++ T Sbjct: 38 EELDRALGMAVRDASVKAIVISGNGDHFSAGH------DLKEAAAKRSNFTVEQRWEFEE 91 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 Y + A +I + ++ G ++ + + +S P Sbjct: 92 RYYLGYAMHIYDCPKPTIAQVSGACIAGGFMVANM------CDLIVASDDAFFSDPVC-- 143 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + V +R L G + EA +G+++ V + Sbjct: 144 -------QTLATAAVEVMIHPWVMGARKAK----EFLFLGERMSAREALAIGMVNKVVAR 192 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLED 274 E+ + + K L+ + S ++ Sbjct: 193 AELQAETERMAQRIAACDPFALRLVKRSINRGLEMQGLRSAIDA 236 >gi|237736664|ref|ZP_04567145.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium mortiferum ATCC 9817] gi|229420526|gb|EEO35573.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium mortiferum ATCC 9817] Length = 191 Score = 38.1 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 54/190 (28%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + +I+D + ++ ++ + +D +I+ ++SPGG AG AI+ + +K Sbjct: 28 IIFLGTEIDDNVANAIVAQLLFLEAEDPEKDIIMYINSPGGVVTAGMAIYDTMNYIKPDV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A A E S + L Sbjct: 88 QTVCIGQAASMGALLLSAGAKGKRFALEHSRIMIHQPLG--------------------- 126 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + + + E Sbjct: 127 GARGQATDIEIQAKEILRMKEMLSQILANVSG--------KSVEEILRDTERDNYMSAQE 178 Query: 218 AKKVGLIDVV 227 A + GLID V Sbjct: 179 AVEYGLIDQV 188 >gi|157151545|ref|YP_001450909.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus gordonii str. Challis substr. CH1] gi|262283203|ref|ZP_06060970.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus sp. 2_1_36FAA] gi|189082471|sp|A8AYP9|CLPP_STRGC RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|157076339|gb|ABV11022.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus gordonii str. Challis substr. CH1] gi|262261455|gb|EEY80154.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus sp. 2_1_36FAA] Length = 196 Score = 38.1 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 59/192 (30%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + DS + + +++PGGS AG AI + +K+ Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + +K+ Sbjct: 87 QTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 ++++++ ++ ++ W + Sbjct: 147 RK----------------------------TLEQILADNSGKTVEQIHADAERDYWMSAE 178 Query: 217 EAKKVGLIDVVG 228 E G ID + Sbjct: 179 ETLAYGFIDEIM 190 >gi|147678370|ref|YP_001212585.1| periplasmic serine proteases [Pelotomaculum thermopropionicum SI] gi|146274467|dbj|BAF60216.1| Periplasmic serine proteases [Pelotomaculum thermopropionicum SI] Length = 288 Score = 38.1 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 5/105 (4%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+ ++ I D + L +PGG A E I RA+QK + V V Sbjct: 77 IEDSEAVLRAIRLTPDDMPID---LVLHTPGGLVLASEQIARALQKHPAK--VTVFVPHY 131 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 A S G +I+ A++ IV E +++G + L+ + Sbjct: 132 AMSGGTMIALAADEIVMDENAVLGPVDPQLGEFPAVSVLEVVRQK 176 >gi|126660899|ref|ZP_01731990.1| hypothetical protein CY0110_21440 [Cyanothece sp. CCY0110] gi|126617796|gb|EAZ88574.1| hypothetical protein CY0110_21440 [Cyanothece sp. CCY0110] Length = 217 Score = 38.1 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 65/178 (36%), Gaps = 6/178 (3%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS++++ I D ++ +PGG A E I RA+ + ++ V V Sbjct: 6 IEDSEQVLRAIRLTPPDTPIDLIL---HTPGGLVLATEQIARALIRHPSK--VTVFVPHY 60 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI-KSVKSSPMKAEPS 165 A S G +++ A++ I+ +++G + ++ + + + Sbjct: 61 AMSGGTMLALAADEIIMDANAVLGPVDPQLGNMAAASIINVIQRKPIDKIDDQTLIMGDL 120 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 +N + + D + I T ++ + +A ++GL Sbjct: 121 ALKAINQVQNFVRTLLKDDIPEPKIAPEKIDGIIDLLTTGKITHDCPISVEQASEIGL 178 >gi|322391649|ref|ZP_08065117.1| ATP-dependent Clp protease, protease subunit [Streptococcus peroris ATCC 700780] gi|321145460|gb|EFX40853.1| ATP-dependent Clp protease, protease subunit [Streptococcus peroris ATCC 700780] Length = 196 Score = 38.1 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 2/155 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + DS + + +++PGGS AG AI + +K Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + +K+ Sbjct: 87 QTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + + D L Sbjct: 147 RKNLEQILADNSGKSVEQIHVDAERDYWMSAQETL 181 >gi|229133846|ref|ZP_04262669.1| Enoyl-CoA hydratase/isomerase [Bacillus cereus BDRD-ST196] gi|228649547|gb|EEL05559.1| Enoyl-CoA hydratase/isomerase [Bacillus cereus BDRD-ST196] Length = 263 Score = 38.1 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 5/77 (6%) Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 ++ G +T A +VGL++ V + E L K+ ++ P Sbjct: 163 EMMFTGEPFTAEVAWRVGLVNHVVPRGEALNKAKELA-----AKMAQFSLPALSLMKQSI 217 Query: 265 NLSISSLLEDTIPLMKQ 281 N +SS LED + + + Sbjct: 218 NKGLSSSLEDGLKIEAE 234 >gi|167757344|ref|ZP_02429471.1| hypothetical protein CLORAM_02894 [Clostridium ramosum DSM 1402] gi|237735579|ref|ZP_04566060.1| ATP-dependent Clp protease proteolytic subunit [Mollicutes bacterium D7] gi|167703519|gb|EDS18098.1| hypothetical protein CLORAM_02894 [Clostridium ramosum DSM 1402] gi|229381324|gb|EEO31415.1| ATP-dependent Clp protease proteolytic subunit [Coprobacillus sp. D7] Length = 190 Score = 38.1 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 65/190 (34%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D S ++ ++ + D+ + + ++SPGGS AG AI+ + +K Sbjct: 29 IILLTGTIDDKMSSSIVGQLLYLESLDNNADIFMYINSPGGSINAGMAIYDTMNFIKCDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L + A + S + L + ++ I Sbjct: 89 STIVIGMAASMAAFLLSAGAKGKRCSLPNSEIMIHQPLGAFEGQASDIEISAKRI----- 143 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + K + +++ ++ R+ + E Sbjct: 144 ------------LKQKEKLNLILSKNTNQPIDKIVIDTDRDHFLE------------PDE 179 Query: 218 AKKVGLIDVV 227 A + GLID V Sbjct: 180 ALEYGLIDEV 189 >gi|72382132|ref|YP_291487.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus marinus str. NATL2A] gi|115311342|sp|Q46L44|CLPP1_PROMT RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; AltName: Full=Endopeptidase Clp 1 gi|72001982|gb|AAZ57784.1| ATP-dependent Clp protease proteolytic subunit ClpP [Prochlorococcus marinus str. NATL2A] Length = 196 Score = 38.1 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 60/180 (33%), Gaps = 31/180 (17%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + ++ ++ + DD + + ++SPGGS Y G IF +Q VK + + Sbjct: 38 SANRIVAQLLFLEADDPDKDIFLYINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASM 97 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 A L + A + S + L + + + + K Sbjct: 98 GAFLLCAGAKGKRSSLLHSRIMIHQPLG---GARGQASDIRIQADEILFIKDK------- 147 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 + +S+ P ++ +D + + +EA + G+ID V Sbjct: 148 --------------------LNKELSDRTGQPIERIREDTDRDFYMSPSEAIEYGIIDNV 187 >gi|118579613|ref|YP_900863.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelobacter propionicus DSM 2379] gi|166201831|sp|A1AN85|CLPP_PELPD RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|118502323|gb|ABK98805.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pelobacter propionicus DSM 2379] Length = 199 Score = 38.1 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 61/190 (32%), Gaps = 33/190 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D +I ++ + +D + + ++SPGG +G AI+ ++ +K Sbjct: 28 IIFLGGGIDDQVANLIIAQLLFLEAEDPDKDIHLYINSPGGVVTSGMAIYDTMRYIKAPV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + + S + L + Sbjct: 88 STICVGQAASMGAVLLAAGEKGKRFSLNHSRIMIHQPLGGFQGQ---------------- 131 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + ++++ ++ +D + + Sbjct: 132 --------------ATDISIHAKEILRMKEELNSILADLTGQSKERIEADTDRDYFMSAT 177 Query: 217 EAKKVGLIDV 226 EA++ GLID Sbjct: 178 EAEEYGLIDA 187 >gi|313113728|ref|ZP_07799303.1| Clp protease [Faecalibacterium cf. prausnitzii KLE1255] gi|310623949|gb|EFQ07329.1| Clp protease [Faecalibacterium cf. prausnitzii KLE1255] Length = 406 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 69/217 (31%), Gaps = 37/217 (17%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED----SQELIERIERI--SRDDSATALIVSLSSPGGS 79 W + A + + G I E+ + + + L V + S GG Sbjct: 28 FWEFRNAAETGGTAELLLYGDISRTSWWGDEVTPQAFAADLATIPAMDDLTVRICSGGGD 87 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 +A +AI ++ + ++ I A+ ++V S + + Sbjct: 88 VWAAQAIGAMLE-----------------NRLGTVTAQIEGICASAATIVASHCKVVKAA 130 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 ++ + +P V+ + ++ + D + + ++ Sbjct: 131 EDATYMIH-------------PIKVNPNGFVDMEGLKQLMDALTVMRTNVLNQYAKKTGH 177 Query: 200 PYDKTLVLSDGR-IWTGAEAKKVGLIDVVGGQEEVWQ 235 ++ D WT AEAK+ G ID + + + Sbjct: 178 TVEEVAAWMDATSWWTAAEAKENGFIDEITESNQTAK 214 >gi|260654935|ref|ZP_05860423.1| Clp protease [Jonquetella anthropi E3_33 E1] gi|260630250|gb|EEX48444.1| Clp protease [Jonquetella anthropi E3_33 E1] Length = 195 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 59/190 (31%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + +I + ++ +I + D + + ++SPGG +G AI+ ++ VK Sbjct: 31 IIFLGSEINSLVANSIVAQILFLESDQPDRDICLYINSPGGEVTSGLAIYDTMRYVKCDI 90 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ L + +A S V + ++ I Sbjct: 91 STIVVGMAASMASILLAAGTPGKRIALPNSQVMIHQPMGGAYGQASDVEIHAREI----- 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + + + + V R+ + AE Sbjct: 146 ------------LKTRQRLNEILALHTGQPLSRIEVDTDRDH------------FLSAAE 181 Query: 218 AKKVGLIDVV 227 A+ GL+D V Sbjct: 182 AQSYGLVDRV 191 >gi|124514481|gb|EAY55994.1| ATP-dependent Clp protease, proteolytic subunit [Leptospirillum rubarum] Length = 203 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 53/180 (29%), Gaps = 31/180 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 +I ++ + +D++ + + ++SPGG AG AI+ +Q +K I + A Sbjct: 43 VIAQLLFLEAEDASKDINLYINSPGGVVTAGLAIYDTMQYIKPDVSTICVGQAASMGAVL 102 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A A + + L ++ Sbjct: 103 LAAGADGKRFALPNARIMIHQPLGGVQGQATEIEIHARE--------------------- 141 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + ++++ K + +AK GL+D V Sbjct: 142 ---------ILKMREHLNGILAKHTKQSLAKVSQDTDRDYFLSAEDAKAYGLVDSVISSH 192 >gi|239608495|gb|EEQ85482.1| enoyl-CoA hydratase/isomerase [Ajellomyces dermatitidis ER-3] gi|327353521|gb|EGE82378.1| enoyl-CoA hydratase/isomerase [Ajellomyces dermatitidis ATCC 18188] Length = 269 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 18/35 (51%) Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 + +G ++G EA + ++D +GG +E + Sbjct: 169 VQEGCRFSGKEALEHSIVDGLGGLDEALALIEKRK 203 >gi|261187695|ref|XP_002620266.1| enoyl-CoA hydratase/isomerase [Ajellomyces dermatitidis SLH14081] gi|239594073|gb|EEQ76654.1| enoyl-CoA hydratase/isomerase [Ajellomyces dermatitidis SLH14081] Length = 269 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 18/35 (51%) Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 + +G ++G EA + ++D +GG +E + Sbjct: 169 VQEGCRFSGKEALEHSIVDGLGGLDEALALIEKRK 203 >gi|34558484|ref|NP_908299.1| ATP-dependent Clp protease proteolytic subunit [Wolinella succinogenes DSM 1740] gi|60389700|sp|Q7M7M3|CLPP_WOLSU RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|34481778|emb|CAE11199.1| ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT [Wolinella succinogenes] Length = 195 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I D + ++ ++ + +D + + ++SPGG +G +I+ + VK Sbjct: 29 IIMLSGEINDGVASSIVSQMLFLEAEDPEKDIYLYINSPGGVITSGMSIYDTMNYVKPDI 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + S + L ++ Sbjct: 89 CTICIGQAASMGAFLLSCGTKGKRFSLPNSRIMIHQPLGGAQGQATDIE----------- 137 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + +++ + P +K +D + + Sbjct: 138 -------------------IQAKEILRLKSILNGILASNTGQPLEKIAKDTDRDFFMSAQ 178 Query: 217 EAKKVGLIDVV 227 E+K+ GLID V Sbjct: 179 ESKEYGLIDNV 189 >gi|198283159|ref|YP_002219480.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667656|ref|YP_002425388.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247680|gb|ACH83273.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519869|gb|ACK80455.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acidithiobacillus ferrooxidans ATCC 23270] Length = 214 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 60/190 (31%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + GQ+ED + ++ ++ + ++ + + ++SPGGS AG AI+ +Q V+ + Sbjct: 44 VVFLVGQVEDMMANLVVAQLLFLEAENPDKDIALYINSPGGSVTAGMAIYDTMQFVRPKI 103 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A A + + + ++ I + Sbjct: 104 STVCIGQAASMGAVLLAAGAEGKRYALPNARIMLHQPSGGFQGQAHDIEIHTKEILRI-- 161 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + V + R + E Sbjct: 162 ------------------------RERLNDILVHHTGQGRERIEQDLDRDF---FMSAEE 194 Query: 218 AKKVGLIDVV 227 A+ L+D V Sbjct: 195 AQTYHLVDAV 204 >gi|146341127|ref|YP_001206175.1| ATP-dependent Clp protease proteolytic subunit [Bradyrhizobium sp. ORS278] gi|146193933|emb|CAL77950.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) [Bradyrhizobium sp. ORS278] Length = 210 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED ++ ++ + ++ + + ++SPGG +G AI+ +Q ++ Sbjct: 37 IIFVTGPVEDGMATLIVAQLLFLEAENPKKEIAMYINSPGGVVTSGLAIYDTMQFIRPAV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + AAS G L+ CA + + Sbjct: 97 STLC--TGQAASMGSLLLCAGHKDMR-----FSLPNSRIMVHQPSGGFQG---------- 139 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + S + + PY L + T Sbjct: 140 -------------QATDIMLHAQEILSLKKRLNEIYVKHTGQPYKAIEDALERDKFLTAE 186 Query: 217 EAKKVGLIDVVGG 229 A++ GLID V Sbjct: 187 AAQEFGLIDKVLD 199 >gi|150401562|ref|YP_001325328.1| hypothetical protein Maeo_1139 [Methanococcus aeolicus Nankai-3] gi|150014265|gb|ABR56716.1| protein of unknown function DUF114 [Methanococcus aeolicus Nankai-3] Length = 272 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 5/106 (4%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 +EDS+E++ I S D ++ +PGG A E I A+++ K + VI + M Sbjct: 67 MEDSEEVLRAIRMTSDDVPIDLIL---HTPGGLVLASEQIAMALKEHKAKTTVIIPHYAM 123 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 + G LIS A + I+ + +++G + L+ + Sbjct: 124 SG--GSLISLAVDEIIMDKNAVMGPVDPQIGQYPAASILNVIDTKY 167 >gi|300933116|ref|ZP_07148372.1| enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase [Corynebacterium resistens DSM 45100] Length = 781 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 29/243 (11%), Positives = 67/243 (27%), Gaps = 27/243 (11%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 E + +++ +++ +S + +AG I I+ A A Sbjct: 40 ETVAKVKEAVEAGEVKGIVL--ASAKKTFFAGGDIKSMIKATPED-----------APAL 86 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 + +L + + L+ + + S + Sbjct: 87 TKQIDTMKDNLRTLETLGVPVAAAINGTALGGGLEIALAAHHRIASDAKGLKVGL----- 141 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + V V + VL+ GR + A+A+K GLID + + Sbjct: 142 -----PEVTLGLLPGGGGVTRVVRMLGLQDALMKVLTTGRQFNAADAQKTGLIDEIVPAD 196 Query: 232 EVWQSLYALGVDQSIRK----IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGL 287 ++ + + K + + P + S + +K + Sbjct: 197 QLLDAAKKWVKENPEAKQPWDTEGYKVPGGTPTNPKLAAFLPSFPANVTKQIKGAPMPAP 256 Query: 288 WAV 290 A+ Sbjct: 257 KAI 259 >gi|88763688|gb|ABD49513.1| capsid protein [Wolbachia phage WO] Length = 116 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 FV+L++ +R + +K G + G +A ++GL D V E Sbjct: 1 EMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFIN 48 >gi|262037349|ref|ZP_06010814.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia goodfellowii F0264] gi|261748606|gb|EEY35980.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia goodfellowii F0264] Length = 189 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ED + +I ++ + D +++ ++SPGG AG AI+ ++ +K Sbjct: 28 IIFLGGEVEDNIANSIIAQLLFLDAQDKEKDIVMYINSPGGVVTAGLAIYDTMRHIKADV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L S A + S V + I+ + Sbjct: 88 STVCIGQAASMGAVLLASGAKGKRYSLPNSRVMIHQPSGGARGQATDIQIQAKEIEKI-- 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 ++SE+ P ++ + Sbjct: 146 ----------------------------KKTLNEILSEATGKPVEEIYRDTERDNFMSSE 177 Query: 217 EAKKVGLIDVV 227 EA G+ID + Sbjct: 178 EALAYGIIDKI 188 >gi|68535224|ref|YP_249929.1| hypothetical protein jk0159 [Corynebacterium jeikeium K411] gi|68262823|emb|CAI36311.1| fadB1 [Corynebacterium jeikeium K411] Length = 775 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 56/195 (28%), Gaps = 23/195 (11%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 EL+E+++ A ++++ S + +AG I I+ I Sbjct: 38 ELVEKLQGAVESGEAKGVVIT--SAKKTFFAGGDIKSMIKSTPEDAEAI----------- 84 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 + A +L + + L+ + + S + Sbjct: 85 TKQINGMKAGLRAIETLGVPVVAAINGAALGGGLEIALATHHRIASDAKGLKVGL----- 139 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 + V V I VL+ GR + +A K GLID V + Sbjct: 140 -----PEVTLGLLPGGGGVTRVVRMLGIQDALMKVLTTGRQFRAEDALKTGLIDEVAPAD 194 Query: 232 EVWQSLYALGVDQSI 246 ++ + + Sbjct: 195 QLIDAAKKWIKENPE 209 >gi|330943556|gb|EGH45893.1| signal peptide peptidase SppA, 36K type [Pseudomonas syringae pv. pisi str. 1704B] Length = 64 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 8/71 (11%) Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTI 276 +A +GL+D +G V + + + I ++ ++ + K L S + + I Sbjct: 1 QAVALGLVDGLGSASYVARDVIK------EKDIVEYTVEESPFDRFSKKLGTS--IAERI 52 Query: 277 PLMKQTKVQGL 287 ++ L Sbjct: 53 AMLVGFNGPSL 63 >gi|301622698|ref|XP_002940664.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit, mitochondrial [Xenopus (Silurana) tropicalis] Length = 247 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+DS ++ ++ + + + + + ++SPGGS AG AI+ +Q + N Sbjct: 60 IICVMGPIDDSLSSLVVAQLLFLQSESNKKPIHMYINSPGGSVTAGLAIYDTMQYILN-- 117 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I A++ + A+ + I + + + + + + Sbjct: 118 -PICTWCVGQAASMGSLLLAAGSSGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEILK 176 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216 + ++ P + + R + Sbjct: 177 LK---------------------------KQINEIYAKHTRQPLSVIESVMERDRYMSPT 209 Query: 217 EAKKVGLIDVV 227 EA++ G++D V Sbjct: 210 EAQEFGILDKV 220 >gi|297526178|ref|YP_003668202.1| protein of unknown function DUF114 [Staphylothermus hellenicus DSM 12710] gi|297255094|gb|ADI31303.1| protein of unknown function DUF114 [Staphylothermus hellenicus DSM 12710] Length = 286 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 6/177 (3%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+ ++ I + ALI+ +PGG A I A+++ K +K VI + M Sbjct: 72 IEDSEAVLRAIRNTPENQPI-ALILH--TPGGLVLAASQIAMALKRHKGKKIVIVPHYAM 128 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + G LI+ A++ I+ +++G + Q P L K +K + Sbjct: 129 SG--GTLIALAADEIIMDPDAVLGPLDPQLQTPKGTFPAPSLIKIAK-MKGDKASDDTLI 185 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 + ++ KA++ +Q+ + + S + T AK++GL Sbjct: 186 YGDIAEKALREIQEFIVQLLKDKMPEEKASEVAKKLTEGYYTHDYPITVEHAKELGL 242 >gi|259048143|ref|ZP_05738544.1| aspartate transaminase [Granulicatella adiacens ATCC 49175] gi|259035204|gb|EEW36459.1| aspartate transaminase [Granulicatella adiacens ATCC 49175] Length = 388 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 50/167 (29%), Gaps = 6/167 (3%) Query: 44 RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 G + + +L E IE + D + A+++ S + + +V + Sbjct: 146 DGFVLTADKLRETIE-ANPDKNFKAVVLVYPSNPTGVTYSKEQLEDLAEVIKEHQLWALC 204 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 E+ A Y + S + E ++V L + + + + + +K Sbjct: 205 DEVYAELTYDKTHYSLANILPEQTIVI--TGLSKSHAMTGWRIGFILGPTHFMNEVVKTH 262 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYH---WFVRLVSESRNIPYDKTLVL 207 + A + + SE R+ + L Sbjct: 263 QYMVTAPTSFAQYGALAAMLHGQDDCAKMMVEYSERRDYLAAELKKL 309 >gi|218264188|ref|ZP_03478072.1| hypothetical protein PRABACTJOHN_03762 [Parabacteroides johnsonii DSM 18315] gi|218222234|gb|EEC94884.1| hypothetical protein PRABACTJOHN_03762 [Parabacteroides johnsonii DSM 18315] Length = 238 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 47/182 (25%), Gaps = 12/182 (6%) Query: 52 ELIERIERISRDDSATALIVSLS-SPGGSAYAGEAIFRAIQKVKNRKPV----ITEVHEM 106 + I++I D+ A+I+S S GSA++ I + K + Sbjct: 26 HFDKAIKKIQTMDNIDAIIISGDLSNDGSAWSYNYIDNLLAKTNIPTFCCPGNHDNLDIF 85 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 S + + + + V F + + P Sbjct: 86 YGSHKSWFYKNCELFMLNGWTFIMLNSV-MAGKSRGNFYPDKFLDLLKHSCGPTVIVLHH 144 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESR----NIPYDKTLVLSDGRIWTGAEAKKVG 222 + ++ + R + + DG I++ A +G Sbjct: 145 PPIEQDGWLNRKLLENRDVFNDIIHKYKNIRLVLYGHTHHHEIKTIDGIIYSS--ASSIG 202 Query: 223 LI 224 Sbjct: 203 FA 204 >gi|253796890|gb|ACT35700.1| capsid protein [Wolbachia phage WO] Length = 99 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Y FV+L++ +R + +K G + G +A ++GL D V E Sbjct: 1 YEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFINK 50 >gi|254712568|ref|ZP_05174379.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase [Brucella ceti M644/93/1] gi|254715640|ref|ZP_05177451.1| enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase [Brucella ceti M13/05/1] gi|261217389|ref|ZP_05931670.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella ceti M13/05/1] gi|261320262|ref|ZP_05959459.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella ceti M644/93/1] gi|260922478|gb|EEX89046.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella ceti M13/05/1] gi|261292952|gb|EEX96448.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Brucella ceti M644/93/1] Length = 738 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 22/240 (9%) Query: 51 QELIERIERISRDDSATALIVSL--SSPGGSA--YAGEAIFRAIQKVKNRKPVITEVHEM 106 QEL I+ + DD ++++ + G A E +F+ QK K + P Sbjct: 36 QELNAIIDAVIADDKIKGVVITSGKETFSGGADLTMLEGMFKEFQKQKVKDPEGAVQTLF 95 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + + + A +P Sbjct: 96 DNVGKMSGLFRKLETCGKPWVSAINGTCMGGAFEMS------------LACHARVASDAP 143 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 ++ V++ RL ++ D +++ G T AK +GL+ Sbjct: 144 GVKMALPEVKVGLFPGAGGTQRVPRLANQ-----QDALQMMTMGSSLTAQRAKAMGLVTE 198 Query: 227 VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQG 286 + +++ ++ L ++ ++ W+ + + L + + + G Sbjct: 199 IAPAKKLVETAKKLIK-GGLKPVQPWDEKGFKLPGGAIYSAAGANLWPAATAILRRETSG 257 >gi|149010631|ref|ZP_01832002.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae SP19-BS75] gi|149013224|ref|ZP_01834010.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae SP19-BS75] gi|147762975|gb|EDK69920.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae SP19-BS75] gi|147765112|gb|EDK72041.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae SP19-BS75] Length = 147 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 2/110 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + DS + + +++PGGS AG AI + +K Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 I + S A + + D Sbjct: 87 QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDN 136 >gi|116054180|ref|YP_788624.1| putative membrane-bound protease [Pseudomonas aeruginosa UCBPP-PA14] gi|115589401|gb|ABJ15416.1| putative membrane-bound protease [Pseudomonas aeruginosa UCBPP-PA14] Length = 443 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 61/209 (29%), Gaps = 27/209 (12%) Query: 33 DNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 S V +++ G I + L+ IER + D A +++ L +PGG + I +AI Sbjct: 22 AASGPVRVLSVDGAIGPASADYLVRGIERAAED-GAQLVVLELDTPGGLDASMRRIVKAI 80 Query: 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 + A + AA L Sbjct: 81 LA---------------SQVPVAGFVAPSGARAASAGTYILYACHIAAMAPGTNLGAATP 125 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSD 209 + P + + + M + ++R +++ R + + + Sbjct: 126 VR-------LGTPDKPAEKPPARDAEPMARKQVNDAAAYIRGLAQLRGRNVEWAERAVRE 178 Query: 210 GRIWTGAEAKKVGLID-VVGGQEEVWQSL 237 EA +ID ++ + L Sbjct: 179 AVSLAAHEAAAQRVIDLQARDLPDLLRQL 207 >gi|54295797|ref|YP_128212.1| hypothetical protein lpl2887 [Legionella pneumophila str. Lens] gi|53755629|emb|CAH17131.1| hypothetical protein lpl2887 [Legionella pneumophila str. Lens] Length = 501 Score = 38.1 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 80/248 (32%), Gaps = 35/248 (14%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRD 63 K ++T + + L +V S + + I+G I + L I+ Sbjct: 65 KFMQTSCIFIFLTLFLLVGLQTSFAA-----KIVELNIKGPIGPATADYLERGIKSAQD- 118 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 A +++ + +PGG ++ IQ I + Sbjct: 119 --ADLIVILIDTPGGL---YDSTRNIIQLFLLSDVPIVTYVSPTG----------ARAAS 163 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 A T L+ + + P + + K M++ V Sbjct: 164 AGTYLMYASTLAAMAPGTQMGAASPVSLGTGFSEGEK----------DEKKKSTMENKVT 213 Query: 184 SSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALG 241 +R +++ R D +++G+ T EA G+++ + ++++ + + Sbjct: 214 HDAVATIRSLAQLRGRDLDFAEKAVTEGKSITANEALSKGVVNYIAKNRDDLLSQINGIK 273 Query: 242 VDQSIRKI 249 V Q+ + I Sbjct: 274 VSQNNKTI 281 >gi|171915864|ref|ZP_02931334.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Verrucomicrobium spinosum DSM 4136] Length = 237 Score = 38.1 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 57/193 (29%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I I+D +I ++ + D + + ++SPGGS AG AI+ +Q V Sbjct: 44 IIFIGTPIDDQVANIVIAQLLFLQMQDPKKDINIYINSPGGSVTAGLAIYDTMQFVTCDV 103 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + A L + A S + V Sbjct: 104 NTYCIGIAASMGAVLLTAGTKGKRYALPNSHIMIHQVSGGAQG----------------- 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 V+ + + +++S + +D + +G Sbjct: 147 -------------TASDVERTVEFMYRLKRRLNKIISHHTGKTVEAVERDADRDYYMSGE 193 Query: 217 EAKKVGLIDVVGG 229 EA G++D V Sbjct: 194 EAAAYGIVDKVLD 206 >gi|189502525|ref|YP_001958242.1| hypothetical protein Aasi_1180 [Candidatus Amoebophilus asiaticus 5a2] gi|189497966|gb|ACE06513.1| hypothetical protein Aasi_1180 [Candidatus Amoebophilus asiaticus 5a2] Length = 224 Score = 38.1 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + D + + ++SPGGS Y G I+ +Q + I + +A Sbjct: 73 IVAQLLFLESTDPKKDVRLYINSPGGSVYPGLGIYDTMQYIAPDVHTICTGLAASMAAVL 132 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L A A S + L ++ + + Sbjct: 133 LAGGAHKKRYALPHSRILIHQPLGGAQGQASDMEITVKQMLEI----------------- 175 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GAEAKKVGLIDVV 227 +++++ K D W +EAK+ G+ID V Sbjct: 176 -------------KRDLYQILAKHTGKSQGKLEKDGDRDYWMRASEAKEYGIIDEV 218 >gi|257077641|ref|ZP_05572002.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus faecalis JH1] gi|256985671|gb|EEU72973.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus faecalis JH1] Length = 176 Score = 38.1 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 2/114 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D + +I ++ + DS + + ++SPGGS AG AIF + VK Sbjct: 29 IIMLSGPIDDNVANSVIAQLLFLDAQDSEKDIYLYINSPGGSVSAGLAIFDTMNFVKADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 I + + L + A + + L ++ Sbjct: 89 QTIVLGMAASMGSFLLTAGQKGKRFALPNAEIMIHQPLGGAQGQATEIEIAARH 142 >gi|227554886|ref|ZP_03984933.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus faecalis HH22] gi|257081032|ref|ZP_05575393.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus faecalis E1Sol] gi|227175979|gb|EEI56951.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus faecalis HH22] gi|256989062|gb|EEU76364.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus faecalis E1Sol] Length = 181 Score = 38.1 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 2/114 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D + +I ++ + DS + + ++SPGGS AG AIF + VK Sbjct: 29 IIMLSGPIDDNVANSVIAQLLFLDAQDSEKDIYLYINSPGGSVSAGLAIFDTMNFVKADV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 I + + L + A + + L ++ Sbjct: 89 QTIVLGMAASMGSFLLTAGQKGKRFALPNAEIMIHQPLGGAQGQATEIEIAARH 142 >gi|165971139|gb|AAI58370.1| clpp protein [Xenopus (Silurana) tropicalis] Length = 228 Score = 38.1 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+DS ++ ++ + + + + + ++SPGGS AG AI+ +Q + N Sbjct: 41 IICVMGPIDDSLSSLVVAQLLFLQSESNKKPIHMYINSPGGSVTAGLAIYDTMQYILN-- 98 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I A++ + A+ + I + + + + + + Sbjct: 99 -PICTWCVGQAASMGSLLLAAGSSGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEILK 157 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216 + ++ P + + R + Sbjct: 158 LK---------------------------KQINEIYAKHTRQPLSVIESVMERDRYMSPT 190 Query: 217 EAKKVGLIDVV 227 EA++ G++D V Sbjct: 191 EAQEFGILDKV 201 >gi|163737901|ref|ZP_02145317.1| carnitinyl-CoA dehydratase [Phaeobacter gallaeciensis BS107] gi|161388517|gb|EDQ12870.1| carnitinyl-CoA dehydratase [Phaeobacter gallaeciensis BS107] Length = 261 Score = 38.1 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 20/48 (41%) Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 R + +L GR + EA + GL++ + +++ + L Sbjct: 148 KRIPYHIAMELLLTGRWFDAEEAHRWGLVNEIVTADQLLDRAWELARL 195 >gi|85376590|gb|ABC70512.1| capsid protein [Wolbachia phage WO] Length = 124 Score = 38.1 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 1/94 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 P + ++++ ++ V+ Y V L++ +RN+ + G + G +A ++GL D Sbjct: 1 PPGPMTSESLENLKSEVNRLYGMLVELIARNRNLSVEAIKSTEAGLYF-GEKAVEIGLAD 59 Query: 226 VVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 + E + + + I D N Sbjct: 60 GITILSEFKYINKNRSITMNEQTITDLKEETNNL 93 >gi|289766730|ref|ZP_06526108.1| predicted protein [Fusobacterium sp. D11] gi|289718285|gb|EFD82297.1| predicted protein [Fusobacterium sp. D11] Length = 170 Score = 38.1 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 4/127 (3%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 F+L K K + +SL + V F+ + VED ++ ++I + + L++ +E + Sbjct: 39 FILGKFKNKDK-ISLKGVKTVVFNLNELVEDYM--ISTVSINKTL-SHEALLKALENLVN 94 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 D +I+ + S E I +K+ K +I + + A+ I + Sbjct: 95 DKKIEKIIIDVDEVDLSRVHIEEIKEIFEKLSVNKEIIAIGTTFDEYSYQVSLLANKIYM 154 Query: 123 AAETSLV 129 Sbjct: 155 LNTKQSC 161 >gi|254227609|ref|ZP_04921040.1| Membrane-bound serine protease [Vibrio sp. Ex25] gi|262395657|ref|YP_003287510.1| nfed family protein [Vibrio sp. Ex25] gi|151939651|gb|EDN58478.1| Membrane-bound serine protease [Vibrio sp. Ex25] gi|262339251|gb|ACY53045.1| nfed family protein [Vibrio sp. Ex25] Length = 458 Score = 38.1 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 74/241 (30%), Gaps = 11/241 (4%) Query: 36 PHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI-QK 92 V + ++G I S L +E + + +I+ + +PGG A I AI Sbjct: 21 NTVWIVPVKGAIGPATSDYLSRELEEAQLN-GVSLVILEMDTPGGLDSAMRDIIHAITTS 79 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL--FQYPYVKPFLDKLGV 150 + AASAG I AS++ AE + +G+ + P D Sbjct: 80 STPVATWVGPSGSRAASAGTYILLASHVAAMAEATNLGAATPVALGGAPQPPSSDDGKDQ 139 Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 + + + ++ + + + RN + + +S+ Sbjct: 140 NAEETSEGTNEGSEKVPAKTAMEKKVINDARAYIKGLAKLH----GRNAEWAE-KAVSEA 194 Query: 211 RIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISS 270 EA ++ +ID + E + + + W + Sbjct: 195 ASLDATEALELNVIDYIANSPEDLVKAIDGQTVKVNNRDVTLSLENPVWIERTPDWRAEM 254 Query: 271 L 271 L Sbjct: 255 L 255 >gi|163743323|ref|ZP_02150703.1| carnitinyl-CoA dehydratase [Phaeobacter gallaeciensis 2.10] gi|161383317|gb|EDQ07706.1| carnitinyl-CoA dehydratase [Phaeobacter gallaeciensis 2.10] Length = 261 Score = 38.1 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 20/48 (41%) Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 R + +L GR + EA + GL++ + +++ + L Sbjct: 148 KRIPYHIAMELLLTGRWFDAEEAHRWGLVNEIVTADQLLDRAWELARL 195 >gi|317501080|ref|ZP_07959286.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae bacterium 8_1_57FAA] gi|316897467|gb|EFV19532.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae bacterium 8_1_57FAA] Length = 242 Score = 38.1 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 63/196 (32%), Gaps = 37/196 (18%) Query: 41 IAIRGQIEDSQELIERIE-RISRDDSATA---LIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 + + G+I D + + ++ D+ + + ++SPGG +A I+ + + Sbjct: 23 LYLDGEISDETWFGDEVTPKLFSDELHAGDGNITLWINSPGGDVFAAAQIYNMLMDYPHD 82 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 V +AASA +I+ A + + +++ ++ Sbjct: 83 VTVKI--DALAASAASVIAMAGTKVCMSPVAMMMVHNPA------------------TIA 122 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215 + +N +M S + K L D W Sbjct: 123 IGDTEEMQKAIDMLNEVKESIMNAYEIKS------------GLSRHKISQLMDAETWMNA 170 Query: 216 AEAKKVGLIDVVGGQE 231 EA K+G D + ++ Sbjct: 171 KEAVKLGFADEILFRD 186 >gi|254453571|ref|ZP_05067008.1| Clp protease [Octadecabacter antarcticus 238] gi|198267977|gb|EDY92247.1| Clp protease [Octadecabacter antarcticus 238] Length = 195 Score = 38.1 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 65/191 (34%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I ++ ++ + ++ + + ++SPGG AG +I+ +Q +K + Sbjct: 24 IIFVNGPIHSGMSHLIVAQLLHLEAENPKKEISMYINSPGGEVTAGLSIYDTMQYIKPKV 83 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + C + + ++ G G+ F P + + + + Sbjct: 84 ST--------------LICGMAASMGSVIAIGGEKGMRFALPNAEVMIHQPSGGSQG--- 126 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + ++ + +L + D +W T Sbjct: 127 -------------KAEDILISARHIERTRERMYQLYVKHSGQSLKTVQKALDRDLWMTPL 173 Query: 217 EAKKVGLIDVV 227 EAK+ G +D + Sbjct: 174 EAKEWGHLDEI 184 >gi|319787636|ref|YP_004147111.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudoxanthomonas suwonensis 11-1] gi|317466148|gb|ADV27880.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudoxanthomonas suwonensis 11-1] Length = 209 Score = 38.1 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + ++ + + ++SPGG AG AI+ +Q +K Sbjct: 37 VIFLVGPVEDHVANVIIAQMLFLEAENPEKDISLYINSPGGLVTAGMAIYDTMQYIKPDV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A+ A S V L + +D Sbjct: 97 STICVGQAASMGAVLLAAGAAGKRYALPNSRVMIHQPLGGFQGQATDIDIHARE------ 150 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + S ++++ + + A Sbjct: 151 ------------------------ILSMRARLNEILAQHTGQSIETIARDTERDNFKSAA 186 Query: 217 EAKKVGLIDVV 227 EAK GL+D V Sbjct: 187 EAKAYGLVDEV 197 >gi|223369879|gb|ACM88806.1| ATP-dependent Clp protease proteolytic subunit [Chlorella sorokiniana] Length = 201 Score = 38.1 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 56/179 (31%), Gaps = 29/179 (16%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + +LI + ++ ++ L + ++SPGGS G A++ A+ +K+ I + + Sbjct: 44 ANQLIGIMLYLNAEEQNKGLYIYINSPGGSVTCGIAVYDAMNYIKSDVTTICVGTAASMA 103 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 + L +A S + SE Sbjct: 104 SFILAGGDRGKRIALPHSRIMIHQPEG---------------------GSQGQASEVLSE 142 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 Q + L SR++ D+ + EAK GL+D V Sbjct: 143 SEEVMRIRRQVGRIYAERTGQPLSRISRDMDRDQ--------FLSAREAKDYGLVDQVA 193 >gi|293401151|ref|ZP_06645295.1| Clp protease [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305277|gb|EFE46522.1| Clp protease [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 241 Score = 38.1 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 63/198 (31%), Gaps = 37/198 (18%) Query: 41 IAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 + + G I + ++ ++ + + + V ++SPGG A I+ + + Sbjct: 16 LFLNGTIAEESWFDDDVTPQLFKDELLSGSGDITVWINSPGGDCVAAAQIYNMLMDY--K 73 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 V ++ +AASA +I+ A ++ + S++ + ++K + V Sbjct: 74 GNVTVKIDGIAASAASVIAMAGTKVLVSPVSMMMIHNPMTVAFGNTGEMEKAIAMLDEV- 132 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215 + + K L D W Sbjct: 133 -----------------------------KESIINAYEIKTGLSRAKLSHLMDAETWMNA 163 Query: 216 AEAKKVGLIDVVGGQEEV 233 A ++G D V +EE Sbjct: 164 NMAVELGFADEVMKREEA 181 >gi|268610677|ref|ZP_06144404.1| peptidase s14, clpp [Ruminococcus flavefaciens FD-1] Length = 250 Score = 38.1 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 61/189 (32%), Gaps = 37/189 (19%) Query: 44 RGQIEDSQELIERIERIS---RDDSATA-LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV 99 G I + + I + L V L+SPGG +A I+ ++ + V Sbjct: 21 NGPISEDTWFGDEITPAMFRNELSKVSGDLTVWLNSPGGDVFAASQIYTMLRNH--KGKV 78 Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 ++ +AASA +++ A + + A T ++ K + K + VK Sbjct: 79 TVKIDGIAASAASVVAMAGDETLIAPTGMLMIHNPSTVAFGNKEAMQKAIELLDEVK--- 135 Query: 160 MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEA 218 + E + K + D W +A Sbjct: 136 ---------------------------ESIINAYEEKSGLSRSKIARMMDEETWLNAKKA 168 Query: 219 KKVGLIDVV 227 + +GL+D + Sbjct: 169 QSLGLVDGI 177 >gi|225182027|ref|ZP_03735459.1| protein of unknown function DUF114 [Dethiobacter alkaliphilus AHT 1] gi|225167312|gb|EEG76131.1| protein of unknown function DUF114 [Dethiobacter alkaliphilus AHT 1] Length = 277 Score = 38.1 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 5/105 (4%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS++++ I D + + +PGG A E I A++ ++ V V Sbjct: 71 IEDSEQVLRAIRYTPDDMPID---LLIHTPGGLVLASEQIANALKNHPSK--VTVFVPHY 125 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 A S G +I+ A++ I+ +++G + L + Sbjct: 126 AMSGGTMIALAADEILMDGNAVLGPVDPQIGRYPAVSILKAVRAK 170 >gi|148223587|ref|NP_001088816.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog [Xenopus laevis] gi|76779451|gb|AAI06237.1| LOC496087 protein [Xenopus laevis] Length = 247 Score = 38.1 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+DS ++ ++ + + + + + ++SPGGS AG AI+ +Q + N Sbjct: 60 IICVMGPIDDSLSSVVVAQLLFLQSESNKKPIHMYINSPGGSVTAGLAIYDTMQYILN-- 117 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I A++ + A+ + I + + + + + + Sbjct: 118 -PICTWCVGQAASMGSLLLAAGSSGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEILK 176 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGA 216 + ++ P + + R + Sbjct: 177 LK---------------------------KQINEIYAKHTRQPLSVIESVMERDRYMSPT 209 Query: 217 EAKKVGLIDVV 227 EA++ G++D V Sbjct: 210 EAQEFGILDKV 220 >gi|150388889|ref|YP_001318938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alkaliphilus metalliredigens QYMF] gi|167008644|sp|A6TM61|CLPP_ALKMQ RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|149948751|gb|ABR47279.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alkaliphilus metalliredigens QYMF] Length = 194 Score = 38.1 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 60/195 (30%), Gaps = 33/195 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + +I D L+ ++ + +D + + ++SPGGS AG AI+ + +K Sbjct: 29 IIFLGDEINDVTASLLVAQLLFLEAEDPDKDIQIYINSPGGSITAGMAIYDTMNYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A + V L Sbjct: 89 STICVGMAASMGAFLLAAGAKGKRFALPNAEVMIHQPLGGTRGQA--------------- 133 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 + +V LV E P ++ +D + Sbjct: 134 --------------EDIRIHAERIVKLRDTLNKILV-ERTGQPLERVQKDTDRDFFMEAK 178 Query: 217 EAKKVGLIDVVGGQE 231 EAK+ G+ID V Sbjct: 179 EAKEYGIIDEVISSR 193 >gi|6723221|dbj|BAA89619.1| capsid protein [Bacteriophage WO] Length = 113 Score = 38.1 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 Y F++L++ +R + +K G + G +A ++GL D V E Sbjct: 13 YEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFIN 61 >gi|242398666|ref|YP_002994090.1| NfeD nodulation like protein, probable membrane protein [Thermococcus sibiricus MM 739] gi|242265059|gb|ACS89741.1| NfeD nodulation like protein, probable membrane protein [Thermococcus sibiricus MM 739] Length = 451 Score = 38.1 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 3/117 (2%) Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALI 70 V++ + + F + + + V I+G+I + I R +A A+I Sbjct: 2 VVMRKILIAAFLFIFLTPALAQASVVYVAQIKGEITPYTYDQFDRYISEAER-ANANAII 60 Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 + L +PGG A A + I I+ + A++ + ++A Sbjct: 61 ILLDTPGGRADAMQNIIERIKSAEVPVITYVYPPGGMAASAGTYIALGSHLIAMAPG 117 >gi|258570625|ref|XP_002544116.1| predicted protein [Uncinocarpus reesii 1704] gi|237904386|gb|EEP78787.1| predicted protein [Uncinocarpus reesii 1704] Length = 267 Score = 38.1 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 24/83 (28%) Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221 + + +V P +++ GR + EA Sbjct: 123 HDYRIQNPSKGYLCLNEVHFGAWLPAPMASIVKHKVGNPATVRDLITAGRRFDSTEALAA 182 Query: 222 GLIDVVGGQEEVWQSLYALGVDQ 244 G+ID GG +E + + + Sbjct: 183 GIIDATGGIDEALTFIEKRSLVK 205 >gi|222109346|ref|YP_002551610.1| enoyl-CoA hydratase [Acidovorax ebreus TPSY] gi|221728790|gb|ACM31610.1| Enoyl-CoA hydratase/isomerase [Acidovorax ebreus TPSY] Length = 254 Score = 38.1 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 11/104 (10%), Positives = 28/104 (26%), Gaps = 6/104 (5%) Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG------VDQSIRKI 249 R + + G +++ A+ GL++ + + S L ++ Sbjct: 145 RRLPYHLAMEAILTGDMFSAERAQAHGLVNRLVEPGQALDSALELAQAVAANGPLALIAS 204 Query: 250 KDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 K W + + + + +A P Sbjct: 205 KRVAQESADWTQAEMFERQAVITAPVFASLDAREGAAAFAEKRP 248 >gi|149178551|ref|ZP_01857138.1| ATP-dependent clp protease proteolytic subunit [Planctomyces maris DSM 8797] gi|148842569|gb|EDL56945.1| ATP-dependent clp protease proteolytic subunit [Planctomyces maris DSM 8797] Length = 201 Score = 38.1 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 53/179 (29%), Gaps = 31/179 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 +Q L+ ++ + DD + ++SPGGS AG AI+ +Q + + Sbjct: 42 AQSLVAQLLFLQFDDPEADIHFYINSPGGSVTAGMAIYDTMQYISCDVATYCIGQAASMG 101 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L + A+ A S + L L+ + Sbjct: 102 ALLLTAGAAGKRNALPNSRIMIHQPLAGMQGTATDLEIHAKEV----------------- 144 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GAEAKKVGLIDVV 227 ++ +K +D + EAK GLID V Sbjct: 145 -------------LKMKRRLNEILLHHTGQTLEKIEEDTDRDNFMDAQEAKSYGLIDNV 190 >gi|146321407|ref|YP_001201118.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis 98HAH33] gi|223933328|ref|ZP_03625316.1| Endopeptidase Clp [Streptococcus suis 89/1591] gi|253752247|ref|YP_003025388.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis SC84] gi|253754073|ref|YP_003027214.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis P1/7] gi|253756007|ref|YP_003029147.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis BM407] gi|330833177|ref|YP_004402002.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis ST3] gi|166214715|sp|A4W2X9|CLPP_STRS2 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|145692213|gb|ABP92718.1| putative ATP-dependent protease proteolytic subunit [Streptococcus suis 98HAH33] gi|223897978|gb|EEF64351.1| Endopeptidase Clp [Streptococcus suis 89/1591] gi|251816536|emb|CAZ52172.1| putative ATP-dependent Clp protease proteolytic subunit [Streptococcus suis SC84] gi|251818471|emb|CAZ56300.1| putative ATP-dependent Clp protease proteolytic subunit [Streptococcus suis BM407] gi|251820319|emb|CAR46838.1| putative ATP-dependent Clp protease proteolytic subunit [Streptococcus suis P1/7] gi|292558838|gb|ADE31839.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus suis GZ1] gi|319758636|gb|ADV70578.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis JS14] gi|329307400|gb|AEB81816.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis ST3] Length = 196 Score = 38.1 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 56/193 (29%), Gaps = 31/193 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D + + +++PGGS AG AI + +K Sbjct: 27 IIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + + Sbjct: 87 QTIVMGTAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 144 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + ++++++ + ++ W + Sbjct: 145 --------------------------KTRNKLEKILADNSGKTVKQIHKDAERDYWMSAE 178 Query: 217 EAKKVGLIDVVGG 229 E G ID + Sbjct: 179 ETLAYGFIDQIMD 191 >gi|328910857|gb|AEB62453.1| ATP-dependent Clp protease proteolytic subunit Endopeptidase Clp [Bacillus amyloliquefaciens LL3] Length = 240 Score = 38.1 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 50/168 (29%), Gaps = 31/168 (18%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 L V ++SPGGS + G AI +++ + V + +AAS +I+ A + I ++ Sbjct: 59 LNVHINSPGGSVFEGVAICSMLKQH--KAFVNVYIDGLAASIASVIAMAGDAIFMPSNAM 116 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 + N Q S Sbjct: 117 MMVHN----------------------------PWTIAMGNANEMRKQADVLDKISESMK 148 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQ 235 L + + L D W + +EA GL D + + Sbjct: 149 ASYLEKAGDKLTKETLDSLMDNETWLSASEAVSYGLADEITAANQAAA 196 >gi|320354136|ref|YP_004195475.1| ATP-dependent Clp protease proteolytic subunit ClpP [Desulfobulbus propionicus DSM 2032] gi|320122638|gb|ADW18184.1| ATP-dependent Clp protease proteolytic subunit ClpP [Desulfobulbus propionicus DSM 2032] Length = 200 Score = 38.1 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 54/181 (29%), Gaps = 31/181 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + ++SPGGS AG AI+ +Q ++ + + A Sbjct: 44 VVAQLLFLEAEDPDKDITFYINSPGGSVTAGMAIYDTMQYIRCDVATLCMGQAASMGALL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L S A+ A S + + Y +D Sbjct: 104 LASGAAGKRFALPNSRIMIHQPMGGYQGQATDIDIHARE--------------------- 142 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231 + H +++ K + EA + G+ID V Sbjct: 143 ---------ILRMRHDLNTILARHTGKSMKKIQADTERDNFMSATEACEYGIIDKVLTNR 193 Query: 232 E 232 E Sbjct: 194 E 194 >gi|296134054|ref|YP_003641301.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermincola sp. JR] gi|296032632|gb|ADG83400.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermincola potens JR] Length = 194 Score = 38.1 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I G I+D + +I ++ + +D + + ++SPGG AG AI+ +Q +K Sbjct: 29 IIFIGGPIDDMVANLVIAQMLFLEAEDPDKDIHIYINSPGGVVTAGMAIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + L + A + + L +D Sbjct: 89 STICMGQAASMGSFLLAAGTKGKRYALPYTRIMIHQPLGGVQGQATDIDIHAKE------ 142 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + L+++ P + + Sbjct: 143 ------------------------ILRMKSVLNELLAKHTGQPVEVIARDTERDFFMSAE 178 Query: 217 EAKKVGLIDVV 227 EA+K G++D V Sbjct: 179 EARKYGIVDEV 189 >gi|297564880|ref|YP_003683852.1| hypothetical protein Mesil_0404 [Meiothermus silvanus DSM 9946] gi|296849329|gb|ADH62344.1| protein of unknown function DUF114 [Meiothermus silvanus DSM 9946] Length = 280 Score = 38.1 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 66/183 (36%), Gaps = 21/183 (11%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 I+DS++++ I D S + + L +PGG A E I A+ K K + H Sbjct: 68 IDDSEQVLRAIR--LTDKSVP-IDLVLHTPGGLVLAAEQIAEALIKHPA-KVTVFVPHYA 123 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + A I++ L L QYP IK ++ P Sbjct: 124 MSGGTLIALAADEIVMDENAVLGPVDPQLGQYPAAS--------VIKVLEHKPASEIDDQ 175 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220 + A + + V + + + + E+R ++ + WT EA+ Sbjct: 176 TFILADVARKALIQVHTTVKNLLKKHLEEAR---AEEVAGILSQGTWTHDYPISVEEART 232 Query: 221 VGL 223 +GL Sbjct: 233 LGL 235 >gi|148361299|ref|YP_001252506.1| hypothetical protein LPC_3273 [Legionella pneumophila str. Corby] gi|148283072|gb|ABQ57160.1| hypothetical protein LPC_3273 [Legionella pneumophila str. Corby] Length = 501 Score = 38.1 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 81/248 (32%), Gaps = 35/248 (14%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRD 63 K ++T + + L +V S + + I+G I + L I+ Sbjct: 65 KFMQTSCIFIFLTLFLLVGLQTSFAA-----KIVELNIKGPIGPATADYLERGIKSAQD- 118 Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 A +++ + +PGG ++ IQ I + Sbjct: 119 --ADLIVILIDTPGGL---YDSTRNIIQLFLLSDVPIVTYVSPTG----------ARAAS 163 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 A T L+ + + P + + K M++ V Sbjct: 164 AGTYLMYASTLAAMAPGTQMGAASPVSLGTGFSEGEK----------DEKKKSTMENKVT 213 Query: 184 SSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALG 241 +R +++ R D +++G+ T EA G+++ + ++++ ++ + Sbjct: 214 HDAVATIRSLAQLRGRDPDFAEKAVTEGKSITANEALSKGVVNYIAKNRDDLLSQIHGIK 273 Query: 242 VDQSIRKI 249 V Q+ + I Sbjct: 274 VSQNNKTI 281 >gi|288818082|ref|YP_003432430.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenobacter thermophilus TK-6] gi|288787482|dbj|BAI69229.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenobacter thermophilus TK-6] gi|308751684|gb|ADO45167.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Hydrogenobacter thermophilus TK-6] Length = 199 Score = 38.1 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 59/176 (33%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + D + + ++SPGGS AG AI+ +Q +K I + A Sbjct: 49 IVAQLLFLEAQDPEKDIYMYINSPGGSVTAGMAIYDTMQYIKPDVVTICIGQAASMGAVL 108 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A A S + L + + + +K +E+ Sbjct: 109 LAAGAPGKRYALPHSRIMIHQPLGGITG--------QATDIIIHAEEIKRIKHMLNEI-- 158 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227 +S+ P ++ + + EA++ G++D V Sbjct: 159 --------------------LSKHTGQPLERIERDVERDYFMSSEEAREYGIVDRV 194 >gi|311031628|ref|ZP_07709718.1| serine peptidase [Bacillus sp. m3-13] Length = 444 Score = 38.1 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 5/134 (3%) Query: 5 LKKI--KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIERIERIS 61 +KK+ + L + +H V I + G +E I R + + Sbjct: 1 MKKVLRISYVSAFVLALILSALPLLPTHTSSAEKLVHVIPVNGTVEKGLLSFINRSIQTA 60 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 DD A ++ + +PGG A I + P + V+ A SAG ++ ++ I Sbjct: 61 EDDGADLIVFDIHTPGGLVDAATEIANKFE--GASIPTVAFVNSQALSAGAYLALYADQI 118 Query: 122 VAAETSLVGSIGVL 135 + +G+ V+ Sbjct: 119 YMTPNASMGAAAVI 132 >gi|322385045|ref|ZP_08058695.1| ATP-dependent Clp protease, protease subunit [Streptococcus cristatus ATCC 51100] gi|321270955|gb|EFX53865.1| ATP-dependent Clp protease, protease subunit [Streptococcus cristatus ATCC 51100] Length = 202 Score = 38.1 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 59/192 (30%), Gaps = 31/192 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + DS + + +++PGGS AG AI + +K+ Sbjct: 33 IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + + Sbjct: 93 QTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL-- 150 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + ++++++ ++ ++ W + Sbjct: 151 --------------------------KTRRTLEQILADNSGKSVEQIHADAERDYWMSAQ 184 Query: 217 EAKKVGLIDVVG 228 E + G ID + Sbjct: 185 ETLEYGFIDEIM 196 >gi|238503846|ref|XP_002383155.1| sulfate transporter family protein [Aspergillus flavus NRRL3357] gi|220690626|gb|EED46975.1| sulfate transporter family protein [Aspergillus flavus NRRL3357] Length = 840 Score = 38.1 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 16/154 (10%), Positives = 46/154 (29%), Gaps = 3/154 (1%) Query: 45 GQIEDSQELIERI--ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102 G I D + + + E +I+ S G ++ F I ++ ++ V+ Sbjct: 527 GTIVDVENTMRGLIEEEAFNKRPIRFIILDFSRVYGIDFSAAEAFTRINRILRKRNVLMT 586 Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + + S + + +E + +L +++ Sbjct: 587 ISGLNTGGDVGRSLQNVGLFESENGVQIFEDFNSALEFCENDYLKVFYSHREALLKRKDT 646 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 + + + + +V S H ++ + Sbjct: 647 SSTFLEVPGSHTQHHLHESIVSSPRHRHLQQAAT 680 >gi|83764769|dbj|BAE54913.1| unnamed protein product [Aspergillus oryzae] Length = 1072 Score = 38.1 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 16/154 (10%), Positives = 46/154 (29%), Gaps = 3/154 (1%) Query: 45 GQIEDSQELIERI--ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102 G I D + + + E +I+ S G ++ F I ++ ++ V+ Sbjct: 752 GTIVDVENTMRGLIEEEAFNKRPIRFIILDFSRVYGIDFSAAEAFTRINRILRKRNVLMT 811 Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + + S + + +E + +L +++ Sbjct: 812 ISGLNTGGDVGRSLQNVGLFESENGVQIFEDFNSALEFCENDYLKVFYSHREALLKRKDT 871 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 + + + + +V S H ++ + Sbjct: 872 SSTFLEVPGSHTQHHLHESIVSSPRHRHLQQAAT 905 >gi|331268128|ref|YP_004347777.1| ATP-dependent Clp protease proteolytic subunit [Chlorella variabilis] gi|325296305|gb|ADZ05025.1| ATP-dependent Clp protease proteolytic subunit [Chlorella variabilis] Length = 201 Score = 37.7 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 56/179 (31%), Gaps = 29/179 (16%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + +LI + ++ ++ L + ++SPGGS G A++ A+ +K+ I + + Sbjct: 44 ANQLIGIMLYLNAEEQNKGLYIYINSPGGSVTCGIAVYDAMNYIKSEVTTICVGTAASMA 103 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 + L +A S + SE Sbjct: 104 SFILAGGDRGKRIALPHSRIMIHQPEG---------------------GSQGQASEVLSE 142 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 Q S L SR++ D+ + EAK GL+D V Sbjct: 143 SEEVMRIRRQVGRIYSERTGQALSRISRDMDRDQ--------FLSAREAKDYGLVDQVA 193 >gi|325690442|gb|EGD32445.1| peptidase s14, clpp [Streptococcus sanguinis SK115] Length = 227 Score = 37.7 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 21/196 (10%), Positives = 59/196 (30%), Gaps = 37/196 (18%) Query: 40 RIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95 + + G I ++ +I + + L + ++SPGG +A I+ + K+ Sbjct: 15 VLHLNGTIASESWVDDDVTPQIFKNELMSGSGPLTLWINSPGGDVFAAAQIYNMLMDYKD 74 Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 V + +A++ ++ + + ++ + +V Sbjct: 75 DVTVNIDGIAASAASVIAMAGTTVNMSPVAMMMIH--------------------NPMTV 114 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-T 214 K + ++ + ++ + L D W Sbjct: 115 AIGDSKEMERAIAMLSE------------VKESILNAYEIKTSLSRVQLSHLMDAESWFN 162 Query: 215 GAEAKKVGLIDVVGGQ 230 +A ++G D + + Sbjct: 163 AKKALELGFADSILYE 178 >gi|308172739|ref|YP_003919444.1| ATP-dependent Clp protease proteolytic subunit Endopeptidase Clp [Bacillus amyloliquefaciens DSM 7] gi|307605603|emb|CBI41974.1| ATP-dependent Clp protease proteolytic subunit Endopeptidase Clp [Bacillus amyloliquefaciens DSM 7] Length = 240 Score = 37.7 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 50/168 (29%), Gaps = 31/168 (18%) Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 L V ++SPGGS + G AI +++ + V + +AAS +I+ A + I ++ Sbjct: 59 LNVHINSPGGSVFEGVAICSMLKQH--KAFVNVYIDGLAASIASVIAMAGDAIFMPSNAM 116 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 + N Q S Sbjct: 117 MMVHN----------------------------PWTIAMGNANEMRKQADVLDKISESMK 148 Query: 189 FVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQ 235 L + + L D W + +EA GL D + + Sbjct: 149 ASYLEKAGDKLTKETLDSLMDNETWLSASEAVSYGLADEITAANQAAA 196 >gi|76818292|ref|YP_337327.1| nodulation efficiency protein D [Burkholderia pseudomallei 1710b] gi|76582765|gb|ABA52239.1| nodulation efficiency protein D [Burkholderia pseudomallei 1710b] Length = 560 Score = 37.7 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 71/230 (30%), Gaps = 14/230 (6%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSL 73 L+ L + + + + I + G I + ++ +ER +R+ + A++ L Sbjct: 83 VLIGLLLACAAVAGAAAAARAPIVVIPVAGAIGPASADFVVRGLERAAREHAPLAIV-QL 141 Query: 74 SSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 +PGG + I +AI + AASAG I AS++ A + +G+ Sbjct: 142 DTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARAASAGTYIVYASHVAAMAPGTNLGAA 201 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + A + + + + + + L Sbjct: 202 SPVQLGIGGQAPAGGRREP--------AGAPGAAGAGATDTESIETRKALHDAAAYIRGL 253 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + + +A ++D++ + L Sbjct: 254 AQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLAN--DPADLAAKLDG 301 >gi|304403951|ref|ZP_07385613.1| protein of unknown function DUF107 [Paenibacillus curdlanolyticus YK9] gi|304346929|gb|EFM12761.1| protein of unknown function DUF107 [Paenibacillus curdlanolyticus YK9] Length = 468 Score = 37.7 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 58/220 (26%), Gaps = 21/220 (9%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQI-EDSQELIERIERISRDDSATALIVSLSSPGG 78 V + V I + + Q +ER + + + A +++ L++ GG Sbjct: 31 FQSVALAEMKPAPAAGGAVYVIHAKQTVQAGLQSFLERAYKEAEEARAERIVLVLNTYGG 90 Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 + E I I+ A I +V G Sbjct: 91 RLDSAEEIGGLIKA---------SKVPTTVFVEGKAVSAGTYIALNAEQIVMQPGSTIGA 141 Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 V +L + K+V + + ++L + R Sbjct: 142 AAVVDGSGELVDNPKTVSF----WTSEMMEAARLHGRDPNYAAAMTDVNAEIKLTAIGRT 197 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSL 237 T +EA K G + + +E + L Sbjct: 198 KERGDI------LTLTASEALKAGYAEHLAANVDETLKWL 231 >gi|108796955|ref|YP_636255.1| ATP-dependent Clp protease proteolytic subunit [Pseudendoclonium akinetum] gi|122217843|sp|Q3ZJ12|CLPP_PSEAK RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|56159653|gb|AAV80677.1| proteolytic subunit 2 of clp protease [Pseudendoclonium akinetum] Length = 198 Score = 37.7 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 59/182 (32%), Gaps = 31/182 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + +LI + ++ +D + + V ++SPGGS G +F A+ +K+ I + + Sbjct: 44 ANQLIGIMLYLNAEDKSKGIYVYINSPGGSVTCGVGVFDAMNYIKSDVTTICVGTAASMA 103 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 + L +A S + ++ Sbjct: 104 SFVLAGGRKGKRLALPHS------------------------RIMIHQPEGGSQGQASVV 139 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVG 228 ++ V ++ SE ++ ++ + + EAK GL+D + Sbjct: 140 LSESE------EVLRIRDEVAQIYSERTGQTLERISRDMNRDQFMSAREAKDYGLVDQIA 193 Query: 229 GQ 230 Sbjct: 194 SS 195 >gi|304320235|ref|YP_003853878.1| hypothetical protein PB2503_03302 [Parvularcula bermudensis HTCC2503] gi|303299137|gb|ADM08736.1| hypothetical protein PB2503_03302 [Parvularcula bermudensis HTCC2503] Length = 354 Score = 37.7 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 72/251 (28%), Gaps = 26/251 (10%) Query: 20 LTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS 79 + + P + I + D+++++ I + T L + L +PGG Sbjct: 61 IIAIVHRQEPMGLLGIPQLRYIDLN----DAEDVLNAIR---STPAGTPLEIILHTPGGL 113 Query: 80 AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 I RAI+ K + H + + A NII+ L + P Sbjct: 114 VLPALQIARAIKAHAGPK-TVFVPHYAMSGGTLIALAADNIILNDHAVLGPIDPQIGGLP 172 Query: 140 YVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNI 199 S +++ + + ++E Sbjct: 173 AASIAHVTETKSPDTIEDFTWVLADVARKAQQQLERAAKDLLSGTVSPNAAHAIAE---- 228 Query: 200 PYDKTLVLSDGRIWT------GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 LS GR WT AEA+++GL E +L L D+ ++ + Sbjct: 229 ------ELSSGR-WTHDYPIDAAEAREIGL-HTSTEMPEEIAALMELFPDKLSKQSVSYT 280 Query: 254 PPKNYWFCDLK 264 Sbjct: 281 QEPTLLTRLFG 291 >gi|27904898|ref|NP_778024.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31076632|sp|Q89AA1|CLPP_BUCBP RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|27904296|gb|AAO27129.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 205 Score = 37.7 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 60/194 (30%), Gaps = 31/194 (15%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D+ ++ ++ + +++ + + ++SPGG AG +I+ ++ +K Sbjct: 40 IIFLTGTIDDNTANLIVAQMLFLEAENAKQDIYIYINSPGGVITAGMSIYDTMKFIKPNV 99 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L + S + + Y ++ I VK Sbjct: 100 NTICIGQACSMAALILTAGKKGYRYCLPNSRIMIHQPIGGYNGQASDIEIHAKEIIKVKR 159 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 +S R+ + + Sbjct: 160 -----------------KLNELMAFHTSQSINTIEKDTERDC------------FLSANQ 190 Query: 218 AKKVGLIDVVGGQE 231 A K GLID + Sbjct: 191 AIKYGLIDTILSYR 204 >gi|242373839|ref|ZP_04819413.1| glycine dehydrogenase subunit 1 [Staphylococcus epidermidis M23864:W1] gi|242348393|gb|EES39995.1| glycine dehydrogenase subunit 1 [Staphylococcus epidermidis M23864:W1] Length = 448 Score = 37.7 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 8/90 (8%) Query: 38 VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 V I + G I D +E++E+ DD+A A+ V + GS E I I+ +K Sbjct: 184 VVEIDLDGTITD----LEKLEQAVDDDTA-AVAVQYPNFYGSIEDLEKINNFIKD---KK 235 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETS 127 + A A + + Sbjct: 236 ALFIVYANPLALGLLTPPGAFGADIVVGDT 265 >gi|47027426|gb|AAT08790.1| capsid protein [Wolbachia phage WO] Length = 92 Score = 37.7 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 V+L++ +R + +K G + G +A ++GL D V E Sbjct: 1 EMLVQLIARNRGLSIEKVRSTEAGLYF-GEKAVEIGLADGVTTFFEFIN 48 >gi|6723207|dbj|BAA89612.1| capsid protein [Bacteriophage WO] Length = 123 Score = 37.7 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Y FV+L++ +R + +K G + G +A ++GL D V E Sbjct: 13 YEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFINK 62 >gi|228990018|ref|ZP_04149991.1| hypothetical protein bpmyx0001_7840 [Bacillus pseudomycoides DSM 12442] gi|229002596|ref|ZP_04160643.1| hypothetical protein bmyco0003_56840 [Bacillus mycoides Rock3-17] gi|229003819|ref|ZP_04161628.1| hypothetical protein bmyco0002_7890 [Bacillus mycoides Rock1-4] gi|228757420|gb|EEM06656.1| hypothetical protein bmyco0002_7890 [Bacillus mycoides Rock1-4] gi|228758523|gb|EEM07663.1| hypothetical protein bmyco0003_56840 [Bacillus mycoides Rock3-17] gi|228769684|gb|EEM18274.1| hypothetical protein bpmyx0001_7840 [Bacillus pseudomycoides DSM 12442] Length = 312 Score = 37.7 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Query: 5 LKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD 64 +KK+ +++ +V + +++ + D + +G DS ++ I + +D+ Sbjct: 6 MKKMIG--LIVGIVLIIFLFYYQNHSNSDRKEKIYVEDFKGT-NDSDKIQSAINKA-KDN 61 Query: 65 SATALIVS 72 +++ Sbjct: 62 KIKTVLLD 69 >gi|47027410|gb|AAT08783.1| capsid protein [Wolbachia phage WO] Length = 91 Score = 37.7 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 V+L++ +RN+ G + G +A ++GL D V E + + V + Sbjct: 1 EMLVQLIARNRNLSIQAIKSTEAGLYF-GEKAVEIGLADGVTTFFEFINNHKSRSVSMTT 59 Query: 247 RKIKDWNPPKNYWF 260 ++ + N + Sbjct: 60 DELIEENYRREILE 73 >gi|11498462|ref|NP_069690.1| hypothetical protein AF0856 [Archaeoglobus fulgidus DSM 4304] gi|2649747|gb|AAB90383.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 291 Score = 37.7 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 4/149 (2%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 I+DS++++ I +D +I +PGG A I +A+ + VI + M Sbjct: 81 IDDSEKVLRAIRSTPKDKPIDLII---HTPGGLVLAATQIAKALHDHPAKTTVIVPHYAM 137 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + A I++ L L YP K + + Sbjct: 138 -SGGTLIALAADEILIDPHAVLGPVDPQLMNYPAPSILKVVEKKEPKDIDDKTLIMADIA 196 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 +N + + D R V++ Sbjct: 197 EKAINQVRETVFNLLKDKMDEEKAREVAK 225 >gi|163781838|ref|ZP_02176838.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159883058|gb|EDP76562.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 201 Score = 37.7 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 57/176 (32%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + D + + ++SPGGS AG A++ +Q +K I + A Sbjct: 51 IVAQLLFLESQDPDKDIYLYINSPGGSVTAGMAVYDTMQYIKPDVVTICIGQAASMGAVL 110 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A A S + L + + + +K +E+ Sbjct: 111 LAAGAKGKRYALPHSRIMIHQPLGGIQG--------QATDIIIHAEEIKRIKRMLNEI-- 160 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVV 227 +++ +K + + EAK G+ID V Sbjct: 161 --------------------LAKHTGQDLEKIEKDVERDYFMSAEEAKDYGVIDKV 196 >gi|9626249|ref|NP_040585.1| capsid assembly protein [Enterobacteria phage lambda] gi|215110|gb|AAA96538.1| nu3 (capsid assembly;201) [Enterobacteria phage lambda] gi|242376544|emb|CAQ31252.1| enterobacteria phage lambda, capsid assembly protein [Escherichia coli BL21(DE3)] Length = 201 Score = 37.7 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 2/100 (2%) Query: 182 VDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 +D++ F + VS + L + +++G EA GL D + + + Sbjct: 1 MDATRQMFAQKVSAYTGLSVQVVLDT-EAAVYSGQEAIDAGLADELVNSTDAITVMRD-A 58 Query: 242 VDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 +D ++ K + + + + D +P + Sbjct: 59 LDARKSRLSGGRMTKETQSTTVSATASQADVTDVVPATEG 98 >gi|42527889|ref|NP_972987.1| ATP-dependent Clp protease proteolytic subunit [Treponema denticola ATCC 35405] gi|67460503|sp|Q73JM9|CLPP2_TREDE RecName: Full=ATP-dependent Clp protease proteolytic subunit 2; AltName: Full=Endopeptidase Clp 2 gi|41818934|gb|AAS12906.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema denticola ATCC 35405] gi|325474892|gb|EGC78078.1| ATP-dependent Clp protease proteolytic subunit 2 [Treponema denticola F0402] Length = 200 Score = 37.7 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 62/170 (36%), Gaps = 7/170 (4%) Query: 41 IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 I + G+I S++++ ++ + + + + + SPGG A AG AIF I+ +K Sbjct: 31 IILAGEINKELSEKIVRQLLLMESLSATKPIYIYIDSPGGDADAGFAIFDMIRFIKAPVY 90 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 I +A++ L++ + S L V ++ ++ ++ Sbjct: 91 TIGMGLVASAASIILLAASKERRFGMPNSHYLIHQPLSGIKGVATEIEIHAKELEKMRVK 150 Query: 159 PMK-----AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 K + +S + + ++++R +K Sbjct: 151 INKLIAEETGTDEKKVAKDTDRDCWLNAKESVEYGLISKIAKNRKDIPEK 200 >gi|107025759|ref|YP_623270.1| hypothetical protein Bcen_3402 [Burkholderia cenocepacia AU 1054] gi|116693059|ref|YP_838592.1| hypothetical protein Bcen2424_4965 [Burkholderia cenocepacia HI2424] gi|105895133|gb|ABF78297.1| protein of unknown function DUF107 [Burkholderia cenocepacia AU 1054] gi|116651059|gb|ABK11699.1| protein of unknown function DUF107 [Burkholderia cenocepacia HI2424] Length = 519 Score = 37.7 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 71/211 (33%), Gaps = 9/211 (4%) Query: 40 RIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NR 96 I + G I + ++ ++R +R+ + A+ + L +PGG + I +AI Sbjct: 59 VIPVNGAIGPASADFIVRSLDRAAREHAPLAI-LQLDTPGGLDTSMRQIIKAILGSPVPV 117 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 + AASAG I AS++ A + +G+ + + + Sbjct: 118 AAFVAPGGARAASAGTYIVYASHVAAMAPGTNLGAASPVQFGIGGGAPPGANPGAPRPTG 177 Query: 157 SSPMKAEPSPFSE----VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 +S + ++ + + + L + + Sbjct: 178 ASGASGASGVSDAAAMLLTDTQSTEIRKAMQDASAYIRGLAQLRGRNAEWAERAVREAVS 237 Query: 213 WTGAEAKKVGLIDVVG-GQEEVWQSLYALGV 242 + EA+ ++D++ ++ + L V Sbjct: 238 LSANEARAQHVVDLIAQDPADLARQLDGRAV 268 >gi|327461145|gb|EGF07478.1| peptidase s14, clpp [Streptococcus sanguinis SK1057] Length = 227 Score = 37.7 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 21/196 (10%), Positives = 59/196 (30%), Gaps = 37/196 (18%) Query: 40 RIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95 + + G I ++ +I + + L + ++SPGG +A I+ + K+ Sbjct: 15 VLHLNGTIASESWVDDDVTPQIFKNELMSGSGPLTLWINSPGGDVFAAAQIYNMLMDYKD 74 Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 V + +A++ ++ + + ++ + +V Sbjct: 75 DVTVNIDGIAASAASVIAMAGTTVNMSPVAMMMIH--------------------NPMTV 114 Query: 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-T 214 K + ++ + ++ + L D W Sbjct: 115 AIGDSKEMEKAIAMLSE------------VKESILNAYEIKTSLSRVQLSHLMDAESWFN 162 Query: 215 GAEAKKVGLIDVVGGQ 230 +A ++G D + + Sbjct: 163 AKKALELGFADSILYE 178 >gi|239616994|ref|YP_002940316.1| protein of unknown function DUF114 [Kosmotoga olearia TBF 19.5.1] gi|239505825|gb|ACR79312.1| protein of unknown function DUF114 [Kosmotoga olearia TBF 19.5.1] Length = 280 Score = 37.7 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 4/96 (4%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+E++ I+ D +I +PGG A E I RA++K K + H Sbjct: 72 IEDSEEVLRAIKMTPDDMPIDFII---HTPGGLVLAAEQIARALKKH-KGKVTVFVPHYA 127 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 + + A I++ L + QYP Sbjct: 128 MSGGTLIAIAADEIVMDENAVLGPLDPQIGQYPAAS 163 >gi|166368460|ref|YP_001660733.1| ATP-dependent Clp protease-like protein [Microcystis aeruginosa NIES-843] gi|159028169|emb|CAO89776.1| unnamed protein product [Microcystis aeruginosa PCC 7806] gi|166090833|dbj|BAG05541.1| ATP-dependent Clp protease proteolytic subunit [Microcystis aeruginosa NIES-843] Length = 228 Score = 37.7 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 59/176 (33%), Gaps = 22/176 (12%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 +I ++ + DD + ++S G S Y G+AI + + + + Sbjct: 59 IIAQLLYLQFDDPEKPIFFYINSTGTSWYTGDAIGYETEAF-AICDTLNYIKPPVHTICI 117 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 + + ++ + + G P+ L++ + Sbjct: 118 GQAMGTAAMILSAGT----KGFRASLPHATIVLNQNRTGAQG----------------QA 157 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 +Q+ V ++ + + S++ +K D + T +AK GLID V Sbjct: 158 TDIQIRAKEVIANKQTMLEIFSKNTGQTTEKLAKDMDRTFYLTPQQAKDYGLIDRV 213 >gi|319939551|ref|ZP_08013911.1| hypothetical protein HMPREF9459_00899 [Streptococcus anginosus 1_2_62CV] gi|319811537|gb|EFW07832.1| hypothetical protein HMPREF9459_00899 [Streptococcus anginosus 1_2_62CV] Length = 227 Score = 37.7 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 11/181 (6%) Query: 41 IAIRGQIEDSQELIE---------RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 I I+G I ++E +E I + L V ++S GG Y I+ ++ Sbjct: 4 IEIKGVIIPKSSILEYKKDGREYTSLEDIKIPFPSEPLEVRINSSGGDVYTANEIYAKLR 63 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 K + V +AASA +I+ A ++I +L+ V L + + Sbjct: 64 GHKGKVTVKIVG--LAASAASVIAMAGDVIEMNPIALMMIHNVSTLTYGNSQQLKRQIET 121 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + + A K +MM+ S + L + + R Sbjct: 122 MDVANDALATAYQERTGLAKEKIKEMMERETWLSCDTAISLGFADKKMFVKDIDTTMVKR 181 Query: 212 I 212 I Sbjct: 182 I 182 >gi|332283232|ref|YP_004418917.1| peptidase S14 [Pusillimonas sp. T7-7] gi|330430960|gb|AEC22293.1| peptidase S14 [Pusillimonas sp. T7-7] Length = 240 Score = 37.7 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 58/195 (29%), Gaps = 43/195 (22%) Query: 39 ARIAIRGQI------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 A I + G I D E + + I D + + + SPGG +A A+ AI + Sbjct: 29 ATIYLHGVIGGWWGDIDETEFAKTLAGIDADT----IHLRIDSPGGDVFAARAMMTAISQ 84 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 K + VI V +AASA I A + + + + Sbjct: 85 HKAK--VIAHVDGLAASAATGICMACDEVEITQGAGFMIHN------------------A 124 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 ++ + + D ++ ++ D Sbjct: 125 WTIAIGNKADMGKTSELLGKIDAGLSDDY------------AKRTGQKSEQITSWMDEET 172 Query: 213 W-TGAEAKKVGLIDV 226 W T EA + G D Sbjct: 173 WFTADEAVEHGFADR 187 >gi|260892139|ref|YP_003238236.1| protein of unknown function DUF114 [Ammonifex degensii KC4] gi|260864280|gb|ACX51386.1| protein of unknown function DUF114 [Ammonifex degensii KC4] Length = 278 Score = 37.7 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 48/150 (32%), Gaps = 4/150 (2%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS++++ I D +++ +PGG A E I RA++K K + H Sbjct: 69 IEDSEQILRAIRYTPPDMPID-ILLH--TPGGLVLAAEQIARALRKHPA-KVTVFVPHYA 124 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + A I++ L L YP I V + M Sbjct: 125 MSGGTMIALAADEIVMDENAVLGPVDPQLGNYPAASILEVVRQKGIDKVDDTTMILADIS 184 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 V + + + V+ Sbjct: 185 RKAVRQVEEFVFSLLREKMPEEKALAVARY 214 >gi|303257392|ref|ZP_07343405.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderiales bacterium 1_1_47] gi|302859749|gb|EFL82827.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderiales bacterium 1_1_47] Length = 209 Score = 37.7 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G + D ++ ++ + ++ + + + SPGGS YAG +I+ +Q +K Sbjct: 37 VVFLVGPVTDQSANLVVAQLLFLESENPDKDISLYIDSPGGSVYAGLSIYDTMQFIKPDV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A S + Sbjct: 97 STICLGMAASMGAFLLAAGAKGKRFALPNSRIMIHQPSGGTNG----------------- 139 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 +++ + ++SE +K + A Sbjct: 140 -------------TAADIEIQAKEILELRSRLNTILSEHTGQSIEKIAVDTERDNFMSSA 186 Query: 217 EAKKVGLIDVV 227 +A + G+ID V Sbjct: 187 QAVEYGIIDGV 197 >gi|331001370|ref|ZP_08324994.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Parasutterella excrementihominis YIT 11859] gi|329568629|gb|EGG50431.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Parasutterella excrementihominis YIT 11859] Length = 209 Score = 37.7 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G + D ++ ++ + ++ + + + SPGGS YAG +I+ +Q +K Sbjct: 37 VVFLVGPVTDQSANLVVAQLLFLESENPDKDISLYIDSPGGSVYAGLSIYDTMQFIKPDV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L + A A S + Sbjct: 97 STICLGMAASMGAFLLAAGAKGKRFALPNSRIMIHQPSGGTNG----------------- 139 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 +++ + ++SE +K + A Sbjct: 140 -------------TAADIEIQAKEILELRSRLNTILSEHTGQSIEKIAVDTERDNFMSSA 186 Query: 217 EAKKVGLIDVV 227 +A + G+ID V Sbjct: 187 QAVEYGIIDGV 197 >gi|302423756|ref|XP_003009708.1| enoyl-CoA hydratase/isomerase family protein [Verticillium albo-atrum VaMs.102] gi|261352854|gb|EEY15282.1| enoyl-CoA hydratase/isomerase family protein [Verticillium albo-atrum VaMs.102] Length = 276 Score = 37.7 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 19/172 (11%), Positives = 44/172 (25%), Gaps = 19/172 (11%) Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 I+ S P G AI A ++ + L+ Sbjct: 57 IIEFSHPVGVVVTTSAI-----------TKFYSNGLDLDHAFTTPGFWTDSLYKLYHRLL 105 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 F ++ + + ++ + + F Sbjct: 106 TYPMPTVSLIPGHAFAGGFMTAMH----HDYRVMNPSKGFLCMNELEFGAPLKPAMSSIF 161 Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 + R ++ + + + G A + GL+D +GG +E + + Sbjct: 162 RLKCTSPRIYQ----EIVLEAKRFPGPAALEAGLVDALGGLDEALKLIADRK 209 >gi|327400327|ref|YP_004341166.1| hypothetical protein Arcve_0419 [Archaeoglobus veneficus SNP6] gi|327315835|gb|AEA46451.1| protein of unknown function DUF114 [Archaeoglobus veneficus SNP6] Length = 289 Score = 37.7 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 58/177 (32%), Gaps = 9/177 (5%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 +EDS++++ I R +D +I +PGG A I +AI+ + VI + M Sbjct: 73 VEDSEQILRAIRRTPKDQPIDLII---HTPGGLVLAATQIAKAIKAHPAKTTVIVPHYAM 129 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + A II+ L L YP K + + Sbjct: 130 -SGGTLIALAADEIIMDPNAVLGPVDPQLMNYPAPSILKAISKKDPKDIDDQTLIMADIA 188 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 + + + + D + V+ + T AK++GL Sbjct: 189 EKAIKQVRDFVFELLKDRLGEEKAKEVA-----TVLTEGRWTHDYPITVEVAKQLGL 240 >gi|156541196|ref|XP_001599209.1| PREDICTED: hypothetical protein [Nasonia vitripennis] Length = 234 Score = 37.7 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D ++ ++ + + S + + ++SPGG AG I+ +Q V Sbjct: 51 IICLMGPITDDISSLVVAQLLFLQSESSKKPIHLYINSPGGVVTAGLGIYDTMQYVLPPV 110 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + ++ L + A + A + + Sbjct: 111 ATWCVGQACSMASLLLAAGAPGMRHALPNARIMIHQPSGGVQGQ---------------- 154 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 +++ + + L ++ + + + + T Sbjct: 155 --------------ATDIRIQAEEILKLKGQINALYAKHTGLDIQRIENNMERDKFMTPI 200 Query: 217 EAKKVGLIDVV 227 EAK+ G+ID V Sbjct: 201 EAKEFGIIDKV 211 >gi|51473702|ref|YP_067459.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia typhi str. Wilmington] gi|60389549|sp|Q68WL5|CLPP_RICTY RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|51460014|gb|AAU03977.1| Caseinolytic protease [Rickettsia typhi str. Wilmington] Length = 201 Score = 37.7 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 22/187 (11%), Positives = 60/187 (32%), Gaps = 29/187 (15%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + ++ + + ++SPGG AG AI+ +Q +K + + + + Sbjct: 44 IVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQFIKPKVATLCIGQACSMGSLL 103 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + + S + + + Sbjct: 104 LCGGEHGMRYSLPHSRIMIHQPSG-------------------GYKGQATDIEIHARETL 144 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 K +++ ++ ++ + +S + + EAKK GL+D + + Sbjct: 145 KIKKLLNELYSKHTEQALKHIEKS----------MERDNFMSPGEAKKFGLVDNIISSRD 194 Query: 233 VWQSLYA 239 L+ Sbjct: 195 AMALLHK 201 >gi|289577854|ref|YP_003476481.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermoanaerobacter italicus Ab9] gi|297544142|ref|YP_003676444.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527567|gb|ADD01919.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermoanaerobacter italicus Ab9] gi|296841917|gb|ADH60433.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 195 Score = 37.7 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 66/191 (34%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + +I D+ +I ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPGGSITAGFAIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + +A L + A A S + L + + + + + Sbjct: 89 VTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLG---GMHGQATDIKIHAERILK 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 K + +E+ P +K ++ + Sbjct: 146 LRDKLDRIL---------------------------AENTGQPIEKIKADTERDFFMDAE 178 Query: 217 EAKKVGLIDVV 227 +AK G+ID V Sbjct: 179 DAKAYGIIDEV 189 >gi|288958758|ref|YP_003449099.1| ATP-dependent Clp protease, protease subunit [Azospirillum sp. B510] gi|288911066|dbj|BAI72555.1| ATP-dependent Clp protease, protease subunit [Azospirillum sp. B510] Length = 208 Score = 37.7 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 57/191 (29%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D+ + ++ + ++ + + ++SPGG AG AI+ +Q ++ + Sbjct: 37 IIFLIGGVNDAVASLICSQLLFLESENPNKDIALYINSPGGYVSAGLAIYDTMQYIRPQV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + L + A + S + ++ Sbjct: 97 STVCMGQAASMGSLLLAAGAPGKRFSLPNSRIMIHQPSGGAQGQASDIE----------- 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + + + D + + + Sbjct: 146 -------------------IQAQEILKLRSRLNDIYVKHTGQDLDTIETAMERDKFMSPE 186 Query: 217 EAKKVGLIDVV 227 EAK GLID V Sbjct: 187 EAKAFGLIDEV 197 >gi|302523127|ref|ZP_07275469.1| enoyl-CoA hydratase/isomerase [Streptomyces sp. SPB78] gi|302432022|gb|EFL03838.1| enoyl-CoA hydratase/isomerase [Streptomyces sp. SPB78] Length = 222 Score = 37.7 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 4/77 (5%) Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNP 254 SR P ++ GR + EA GL+D V +EV + + + P Sbjct: 144 RSRLTPATAHEAMTTGRRYPAPEALASGLVDAVAAVDEVVTEAVTRARTLAPKSV----P 199 Query: 255 PKNYWFCDLKNLSISSL 271 + L ++++L Sbjct: 200 VRAEIKEGLYAEALAAL 216 >gi|290579971|ref|YP_003484363.1| putative ATP-dependent Clp protease proteolytic subunit [Streptococcus mutans NN2025] gi|254996870|dbj|BAH87471.1| putative ATP-dependent Clp protease proteolytic subunit [Streptococcus mutans NN2025] Length = 196 Score = 37.7 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 47/155 (30%), Gaps = 2/155 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + ++SPGGS AG AI + +K+ Sbjct: 27 IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYINSPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + + +K+ Sbjct: 87 QTIVMGIAASMGTIIASSGAKGKRFMLPNAEYLIHQPMGGTGGGTQQSDMAIAAEQLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + D L Sbjct: 147 RKKLEKILSDNSGKTVKQIHKDAERDYWMDAKETL 181 >gi|225850859|ref|YP_002731093.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Persephonella marina EX-H1] gi|225644930|gb|ACO03116.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Persephonella marina EX-H1] Length = 202 Score = 37.7 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 61/187 (32%), Gaps = 33/187 (17%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 I I + +I ++ + +D + + ++SPGG +G AI+ ++ +K I Sbjct: 44 PIDDHIANL--IIAQLLFLESEDPEKDIYMYINSPGGVVTSGLAIYDTMRYIKPDVVTIC 101 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + A L + A A +S + L + ++ Sbjct: 102 MGQAASMGAFLLSAGAKGKRYALPSSRIMIHQPLGGFQGQATDIEIHAKE---------- 151 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220 + + ++E P +K ++ + + +A + Sbjct: 152 --------------------ILRLKKYLNERLAEHTGQPLEKIERDTERDFFMSAHDAVE 191 Query: 221 VGLIDVV 227 GLID V Sbjct: 192 YGLIDKV 198 >gi|326796767|ref|YP_004314587.1| carboxyl-terminal protease [Marinomonas mediterranea MMB-1] gi|326547531|gb|ADZ92751.1| carboxyl-terminal protease [Marinomonas mediterranea MMB-1] Length = 423 Score = 37.7 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%) Query: 25 FSWSSHVEDNSPHVARIAIRGQIEDS-QELIERIERISRDDSATALIVSLSSPGGSAYAG 83 S +S D +A I + DS +E I+++ +D +I+ L + G Sbjct: 178 SSITSKWLDKDDGIAYIRLSQFQGDSGEEFASAIKQLKQDQPIEGVILDLRNNPGGVLQS 237 >gi|317138452|ref|XP_001816915.2| sulfate transporter family protein [Aspergillus oryzae RIB40] Length = 1036 Score = 37.7 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 16/154 (10%), Positives = 46/154 (29%), Gaps = 3/154 (1%) Query: 45 GQIEDSQELIERI--ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE 102 G I D + + + E +I+ S G ++ F I ++ ++ V+ Sbjct: 716 GTIVDVENTMRGLIEEEAFNKRPIRFIILDFSRVYGIDFSAAEAFTRINRILRKRNVLMT 775 Query: 103 VHEMAASAGYLISCASNIIVAAETSLVGSIGV-LFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + + S + + +E + +L +++ Sbjct: 776 ISGLNTGGDVGRSLQNVGLFESENGVQIFEDFNSALEFCENDYLKVFYSHREALLKRKDT 835 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 + + + + +V S H ++ + Sbjct: 836 SSTFLEVPGSHTQHHLHESIVSSPRHRHLQQAAT 869 >gi|296051584|ref|YP_003632258.1| peptidase S14 ClpP [Planctomyces limnophilus DSM 3776] gi|296016821|gb|ADG70059.1| peptidase S14 ClpP [Planctomyces limnophilus DSM 3776] Length = 179 Score = 37.7 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 52/165 (31%), Gaps = 33/165 (20%) Query: 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 T +++ ++S GG AI++ +++ V + + S I+ A + I Sbjct: 10 SDVTEVVIRINSVGGYVGEASAIYQLLKEHPANIHVKIDGEAI--SCASWIAMAGDKITI 67 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 AE L+ PS + ++ +V+D Sbjct: 68 AEHGLMMVHD------------------------------PSTWISGTADDLRKEAEVLD 97 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 S + + + + W T +AK G +D + Sbjct: 98 SYKEVIAGIYAARSGTDVEDVKKMMSDETWMTATQAKDKGFVDEI 142 >gi|307719554|ref|YP_003875086.1| periplasmic serine protease [Spirochaeta thermophila DSM 6192] gi|306533279|gb|ADN02813.1| periplasmic serine protease [Spirochaeta thermophila DSM 6192] Length = 284 Score = 37.7 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 5/106 (4%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 I+DS+ ++ I+ D ++ +PGG A E I A++K + V V Sbjct: 67 IDDSEAVLRAIKMTDDDVPIDLIL---HTPGGLVVAAEQIAYALKKHPAK--VTVFVPHY 121 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 A S G LI+ A++ +V E +++G + L L Sbjct: 122 AMSGGTLIALAADEVVMDENAVLGPVDPQIGQQPAASILKVLERKP 167 >gi|121534156|ref|ZP_01665981.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosinus carboxydivorans Nor1] gi|121307259|gb|EAX48176.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosinus carboxydivorans Nor1] Length = 203 Score = 37.7 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I G I+D + +I ++ + +D + + ++SPGG AG AI+ +Q +K Sbjct: 29 IVFIGGPIDDHVANLVIAQLLFLESEDPDKDIHLYINSPGGVVTAGLAIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 I + +A L + A A + V L Sbjct: 89 STICLGSAASMAAVLLAAGAPGKRYALPYARVMIHQPLG 127 >gi|86357052|ref|YP_468944.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli CFN 42] gi|116243105|sp|Q2KAB9|CLPP1_RHIEC RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; AltName: Full=Endopeptidase Clp 1 gi|86281154|gb|ABC90217.1| endopeptidase Clp, subunit 1 protein [Rhizobium etli CFN 42] Length = 202 Score = 37.7 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 64/191 (33%), Gaps = 34/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D+ + ++ + D + + ++SPGG+ +G A++ ++ ++ Sbjct: 33 IIFLNGEVNDTVSALVCAQLLFLEADPE-KPINLYINSPGGAVTSGLAMYDTMRFIRAPV 91 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + + + + G G P + + + Sbjct: 92 --------------HTLCMGTARSMGSFLLMAGEPGERAALPNASILIHQPSGGFQG--- 134 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + + + RL +E Y+ + R T Sbjct: 135 -------------QASDMLIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAE 181 Query: 217 EAKKVGLIDVV 227 EA + GLI+ + Sbjct: 182 EALEWGLIERI 192 >gi|315186644|gb|EFU20403.1| hypothetical protein SpithDRAFT_1037 [Spirochaeta thermophila DSM 6578] Length = 284 Score = 37.7 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 55/177 (31%), Gaps = 9/177 (5%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 I+DS+ ++ I+ D ++ +PGG A E I A++K K + H Sbjct: 67 IDDSEAVLRAIKMTDDDVPIDLIL---HTPGGLVVAAEQIAYALKKHPA-KVTVFVPHYA 122 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + A +++ L + Q P I V + Sbjct: 123 MSGGTLIALAADEVVMDENAVLGPVDPQIGQQPAASILKVLERKPIAEVDDETIILADVA 182 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 + + + V ++ T + T EA+++GL Sbjct: 183 EKAIRQVKRVVKTLLEGRLPGDKVEEIATR-----LATGEFTHDYPITVDEARELGL 234 >gi|323139086|ref|ZP_08074144.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylocystis sp. ATCC 49242] gi|322395650|gb|EFX98193.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylocystis sp. ATCC 49242] Length = 210 Score = 37.7 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 56/174 (32%), Gaps = 13/174 (7%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IED + +I ++ + ++ + + ++SPGG +G AI+ +Q +K + Sbjct: 38 IIFVTGPIEDHMASVIIAQLLFLESENPKKEISLYINSPGGVVTSGLAIYDTMQFIKPKV 97 Query: 98 PVITEVHE--------MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 + A + G + + ++ + S + + L Sbjct: 98 STLCVGQAASMGSLLLCAGADGLRYALPNARVMLHQPSGGFQGQASDIQRHAEDILKVKK 157 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 K + ++ ++ + V E R + Sbjct: 158 RLNDIYVRHTGKDYDTIERTLD---RDHFMSAEEAKSFGIIDSVQEKRAEDETE 208 >gi|322373950|ref|ZP_08048485.1| Clp protease [Streptococcus sp. C150] gi|321277322|gb|EFX54392.1| Clp protease [Streptococcus sp. C150] Length = 196 Score = 37.7 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 47/155 (30%), Gaps = 2/155 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 27 IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S + + D + +K+ Sbjct: 87 QTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + + D+ L Sbjct: 147 RNNLEQILADNSGQSIEKVHIDAERDNWMSAQETL 181 >gi|300704788|ref|YP_003746391.1| membrane bound peptidase [Ralstonia solanacearum CFBP2957] gi|299072452|emb|CBJ43799.1| putative membrane bound peptidase; NefD homolog [Ralstonia solanacearum CFBP2957] Length = 474 Score = 37.7 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 25/212 (11%), Positives = 65/212 (30%), Gaps = 4/212 (1%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSP 76 V +WS V + V + + G I + ++ +E + + +++ + +P Sbjct: 14 LAASVAAAWSGLVLAAAAPVMVLPLTGAIGPASAAYVVHGLELARK-EGMQLVVLQMDTP 72 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GG + I +AI A++ ++ I A + Sbjct: 73 GGLDASMRQIIQAILASPVPVAGYVAPGGARAASAGTYILYASHIAAMAPATNLGAASPV 132 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + + S + + + + + D++ + Sbjct: 133 AIGIGGHAPAGPTPANPTPTPGDTAKPASAPAASSNEDTLARKQMHDAAAYIRGLAQLRG 192 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 RN + + + + + EA +ID++ Sbjct: 193 RNADWAE-RAVREAVSLSADEAATQRVIDLIA 223 >gi|288930477|ref|YP_003434537.1| hypothetical protein Ferp_0072 [Ferroglobus placidus DSM 10642] gi|288892725|gb|ADC64262.1| protein of unknown function DUF114 [Ferroglobus placidus DSM 10642] Length = 277 Score = 37.7 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 5/105 (4%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS++++ I RD ++ +PGG A I +AI+ + VI + M Sbjct: 71 IEDSEQVLRAIRMTPRDTPIDLIL---HTPGGLVLAATQIAKAIKDHPAKTTVIVPHYAM 127 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + G LI+ A++ I+ +++G + L + Sbjct: 128 SG--GTLIAIAADEIIMDPHAVLGPLDPQIMGYPAPSILKAVERK 170 >gi|172036825|ref|YP_001803326.1| ATP-dependent Clp protease-like protein [Cyanothece sp. ATCC 51142] gi|171698279|gb|ACB51260.1| ATP-dependent Clp protease, proteolytic subunit [Cyanothece sp. ATCC 51142] Length = 226 Score = 37.7 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 72/212 (33%), Gaps = 33/212 (15%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSP 76 ++ L + FS + I+ +Q +I ++ + D+ + ++S Sbjct: 32 IIYLGLPLFSSDEIKQQVG-----------IDVTQLIIAQLLYLQFDNPEKPIYFYINST 80 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 G S Y G+AI + I + + I + AA G+ G Sbjct: 81 GTSWYTGDAIGFETEAFA-----ICDTMNYVKPPIHTICIGQAMGTAAMILSAGTKGCRA 135 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 P+ L++ + +Q+ V + ++++SE+ Sbjct: 136 SLPHATIVLNQNRSGARG----------------QATDIQIRAKEVLHNKQTMLQILSEN 179 Query: 197 RNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 +K D + T +AK+ GLID V Sbjct: 180 TGQTVEKIAKDIDRTFYLTPEKAKEYGLIDRV 211 >gi|126657895|ref|ZP_01729048.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. CCY0110] gi|126620835|gb|EAZ91551.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. CCY0110] Length = 226 Score = 37.7 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 72/212 (33%), Gaps = 33/212 (15%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSP 76 ++ L + FS + I+ +Q +I ++ + D+ + ++S Sbjct: 32 IIYLGLPLFSSDEIKQQVG-----------IDVTQLIIAQLLYLQFDNPDKPIFFYINST 80 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 G S Y G+AI + I + + I + AA G+ G Sbjct: 81 GTSWYTGDAIGFETEAFA-----ICDTMNYVKPPIHTICIGQAMGTAAMILSAGTKGCRA 135 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 P+ L++ + +Q+ V + ++++S++ Sbjct: 136 SLPHATIVLNQNRSGARG----------------QATDIQIRAKEVLHNKQTMLQILSQN 179 Query: 197 RNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 +K D + T +AK+ GLID V Sbjct: 180 TGQTPEKIAKDIDRTFYLTPEKAKEYGLIDRV 211 >gi|28493447|ref|NP_787608.1| ATP-dependent Clp protease proteolytic subunit [Tropheryma whipplei str. Twist] gi|28572440|ref|NP_789220.1| ATP-dependent Clp protease proteolytic subunit [Tropheryma whipplei TW08/27] gi|67460538|sp|Q83G49|CLPP1_TROWT RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; AltName: Full=Endopeptidase Clp 1 gi|67460539|sp|Q83I18|CLPP2_TROW8 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2; AltName: Full=Endopeptidase Clp 2 gi|28410571|emb|CAD66958.1| ATP dependent Clp protease proteolytic subunit 2 [Tropheryma whipplei TW08/27] gi|28476488|gb|AAO44577.1| ATP-dependent Clp protease proteolytic subunit [Tropheryma whipplei str. Twist] Length = 207 Score = 37.7 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 67/180 (37%), Gaps = 27/180 (15%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +++ ++ + D+ +I+ ++SPGGS A AI+ +Q ++ + + + Sbjct: 44 ASADDVMAQLLVLEGQDAERDIIMYINSPGGSFTAMTAIYDTMQYIRPQIQTVCLGQAAS 103 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A+A L + +A + + + D + + ++ Sbjct: 104 AAAVILSAGTPGKRLALPNARILIHQPVVASSGYGQASDIEIQAREIMRM---------- 153 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 + ++ + + V+ VS+ + +I + +A + GLID + Sbjct: 154 -------REWLEKTLAQHSNKSVKQVSK----------DIDRDKILSSEQALEYGLIDQI 196 >gi|24380050|ref|NP_722005.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus mutans UA159] gi|60389781|sp|Q8DST7|CLPP_STRMU RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|24378042|gb|AAN59311.1|AE014997_1 putative ATP-dependent Clp protease, proteolytic subunit [Streptococcus mutans UA159] Length = 196 Score = 37.7 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 47/155 (30%), Gaps = 2/155 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + ++SPGGS AG AI + +K+ Sbjct: 27 IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYINSPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + + +K+ Sbjct: 87 QTIVMGIAASMGTIIASSGAKGKRFMLPNAEYLIHQPMGGTGGGTQQSDMAIAAEQLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + D L Sbjct: 147 RKKLEKILSDNSGKTIKQIHKDAERDYWMDAKETL 181 >gi|318057267|ref|ZP_07975990.1| hypothetical protein SSA3_04971 [Streptomyces sp. SA3_actG] gi|318076705|ref|ZP_07984037.1| hypothetical protein SSA3_08272 [Streptomyces sp. SA3_actF] Length = 222 Score = 37.7 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 18/47 (38%) Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 SR P ++ GR + EA GL+D V +EV Sbjct: 144 RSRLTPATAHEAMTTGRRYPAPEAMASGLVDAVAAADEVVTEAVTRA 190 >gi|296503172|ref|YP_003664872.1| phage protein [Bacillus thuringiensis BMB171] gi|296324224|gb|ADH07152.1| phage protein [Bacillus thuringiensis BMB171] Length = 260 Score = 37.7 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 62/208 (29%), Gaps = 53/208 (25%) Query: 41 IAIRGQIEDSQE----------------LIERIERISRDDSATALIVSLSSPGGSAYAGE 84 I ++G I + E + + + + DD LIVS++SPGG + G Sbjct: 5 IDVKGPIISNDEAWIYDWFEMDAASPGKISKELIDANGDD----LIVSINSPGGYVHEGS 60 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I+ A++ V +AASA +I+ A + + + T+ + Sbjct: 61 EIYTALKSYPGHVEVQIVG--LAASAASVIAMAGDKVRISPTAQIMIHNASM-------- 110 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + ++ ++ Sbjct: 111 --------------------WNGGDHRDMEKAAEMLKTTDRAIVNAYVIKS--GKSEEEL 148 Query: 205 LVLSDGRIWTG-AEAKKVGLIDVVGGQE 231 L + W G +A + +D + + Sbjct: 149 LHMMAEETWMGPQQALENNFVDEIMFMD 176 >gi|46199413|ref|YP_005080.1| periplasmic serine protease [Thermus thermophilus HB27] gi|46197038|gb|AAS81453.1| periplasmic serine protease [Thermus thermophilus HB27] Length = 275 Score = 37.7 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 57/183 (31%), Gaps = 21/183 (11%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 I+DS++++ I D + + + L +PGG A E I A+ + K + H Sbjct: 68 IDDSEQVLRAIR--LTDKNVP-IDLILHTPGGLVLAAEQIAEALLRHPA-KVTVFVPHYA 123 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + A I++ L L QYP VK K Sbjct: 124 MSGGTLIALAADEIVMDENAVLGPVDPQLGQYPAAS-----------IVKVLEKKPLSEI 172 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220 + A + + L ++ L WT +A+ Sbjct: 173 DDQTLILADVAEKALRQVKTTVKNLLKKHMPEEKAEEVATLLSQGTWTHDYPIDVEQARS 232 Query: 221 VGL 223 +GL Sbjct: 233 LGL 235 >gi|217076631|ref|YP_002334347.1| periplasmic serine protease [Thermosipho africanus TCF52B] gi|217036484|gb|ACJ75006.1| periplasmic serine protease [Thermosipho africanus TCF52B] Length = 291 Score = 37.7 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 62/183 (33%), Gaps = 22/183 (12%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+ELI I+ D +I +PGG A E I A++K K + H Sbjct: 83 IEDSEELIRAIKMTPNDMPIDLII---HTPGGLVLAAEQIANALKKH-KGKVTVFVPHYA 138 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + A I++ L L QYP + S K + + Sbjct: 139 MSGGTLIALAADEIVMDENAVLGPIDPQLGQYPAAS------------ILSVVKKKDINE 186 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220 + + + + + L+ E ++ WT +A++ Sbjct: 187 IDDQTLILADVAEKAMKQMKEYATNLLKEKYEENAEELADKLVSGYWTHDYPITVEKARE 246 Query: 221 VGL 223 +GL Sbjct: 247 LGL 249 >gi|163856669|ref|YP_001630967.1| membrane protein, putative serine protease [Bordetella petrii DSM 12804] gi|163260397|emb|CAP42699.1| membrane protein, putative serine protease [Bordetella petrii] Length = 480 Score = 37.7 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 65/236 (27%), Gaps = 11/236 (4%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-ELIERIERISR 62 +L I +V ++ +S S V + ++G + + E + + Sbjct: 18 LLCAIAWLWVAMAAFMSAPARAQATSAPPGQSAPVVVLQLQGAVGPATTEYLRHGLADAN 77 Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 A A+++ + +PGG A + I RAI A++ + + Sbjct: 78 ARRAAAVVLRIDTPGGLASSMRDIVRAIIASPVPVIGYVAPGGARAASAGTYILYACHLA 137 Query: 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVV 182 A ++ ++ P + Sbjct: 138 AMAPGTNLGAATPIPLGPDSRPRNEDHGKAETDPGGKPADAAPPPHDSKAVNDAAALIRS 197 Query: 183 DSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSL 237 + RN + + + EA + +ID+V ++ + Sbjct: 198 LAD--------MRGRNAEWAE-QAVRGAASLAAREALQQKVIDLVADDLHDLLRRA 244 >gi|206901598|ref|YP_002250810.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus thermophilum H-6-12] gi|206740701|gb|ACI19759.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus thermophilum H-6-12] Length = 194 Score = 37.7 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 58/176 (32%), Gaps = 31/176 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGG AG AI+ ++ +K + + + +A Sbjct: 43 VVAQLLFLESEDPEKDIYLYINSPGGEVSAGLAIYDTMRHIKPKVATVCVGQAASMAAIL 102 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + A S V L ++ I + Sbjct: 103 LAAGDKGKRYALPHSRVMIHQPLGGAYGPAADIEIHTREILKI----------------- 145 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 +++ P +K +D + + EAK+ G++D V Sbjct: 146 -------------KRVLNEILAHHTGQPIEKIERDTDRDFFMSAYEAKEYGIVDEV 188 >gi|119945201|ref|YP_942881.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Psychromonas ingrahamii 37] gi|259585963|sp|A1SUW7|CLPP_PSYIN RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|119863805|gb|ABM03282.1| ATP-dependent Clp protease proteolytic subunit ClpP [Psychromonas ingrahamii 37] Length = 207 Score = 37.7 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 58/193 (30%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + + ++ + + + + ++SPGGS AG AI+ +Q +K Sbjct: 42 VIFLTGPVEDHVANVIAAQLLFLESESPEKDIFIYINSPGGSISAGMAIYDTMQFIKPDV 101 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L S A + V L + + Sbjct: 102 STVCMGMAASMGAFLLASGAPGKRHCLPNAKVMIHQPLGGFQGQASDFEIHAKE------ 155 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + ++ H L++ + + Sbjct: 156 ------------------------ILATKHRMNELLAFHTGKDIEIIAQDTDRDNFMRAS 191 Query: 217 EAKKVGLIDVVGG 229 EA + G++D V Sbjct: 192 EAVEYGIVDSVLT 204 >gi|87198426|ref|YP_495683.1| hypothetical protein Saro_0401 [Novosphingobium aromaticivorans DSM 12444] gi|87134107|gb|ABD24849.1| protein of unknown function DUF107 [Novosphingobium aromaticivorans DSM 12444] Length = 460 Score = 37.7 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 64/224 (28%), Gaps = 12/224 (5%) Query: 30 HVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + V + I G I + + I R + A +I+ + +PGG + I Sbjct: 30 QTQPGRDEVPVLTIEGAIGPATADYVAGGIARAAE-QGAPMVIIRMDTPGGLDTSMREII 88 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 RAI A++ ++ + A Q Sbjct: 89 RAILGSPVPVVTYVSPSGARAASAGAFILTASHVAAMAPGTNVGAATPVQLGAPAAPSTP 148 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 ++ S + + D+ + RN + + + Sbjct: 149 KSSDQQADDKG-------TSSPAKSGGASEAKALNDAIAYIRSLAEMRGRNADWAE-AAV 200 Query: 208 SDGRIWTGAEAKKVGLIDVVGGQE-EVWQSLYALGVDQSIRKIK 250 + + A + +ID+V + ++ + L V +++ Sbjct: 201 REAASLSAKSALEQKVIDIVARDDGDLLAQINGLTVALGNGQVR 244 >gi|75906770|ref|YP_321066.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena variabilis ATCC 29413] gi|110816454|sp|Q3MFR5|CLPP1_ANAVT RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; AltName: Full=Endopeptidase Clp 1 gi|75700495|gb|ABA20171.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena variabilis ATCC 29413] Length = 204 Score = 37.7 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 57/182 (31%), Gaps = 31/182 (17%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + +D + + ++SPGGS AG IF ++ ++ I + A Sbjct: 43 IVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFL 102 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L + ++ S + L ++ Sbjct: 103 LSAGTKGKRMSLPHSRIMIHQPLGGAQGQATDIE-------------------------- 136 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQE 231 + + ++E P ++ ++ + + EA+ GLID V + Sbjct: 137 ----IQAREILYHKRRLNDYLAEHTGQPIERIAEDTERDFFMSPDEARDYGLIDQVIDRH 192 Query: 232 EV 233 Sbjct: 193 AA 194 >gi|55981444|ref|YP_144741.1| hypothetical protein TTHA1475 [Thermus thermophilus HB8] gi|55772857|dbj|BAD71298.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 275 Score = 37.7 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 57/183 (31%), Gaps = 21/183 (11%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 I+DS++++ I D + + + L +PGG A E I A+ + K + H Sbjct: 68 IDDSEQVLRAIR--LTDKNVP-IDLILHTPGGLVLAAEQIAEALLRHPA-KVTVFVPHYA 123 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + A I++ L L QYP VK K Sbjct: 124 MSGGTLIALAADEIVMDENAVLGPVDPQLGQYPAAS-----------IVKVLEKKPLSEI 172 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220 + A + + L ++ L WT +A+ Sbjct: 173 DDQTLILADVAEKALRQVKTTVKNLLKKHMPEEKAEEVATLLSQGTWTHDYPIDVEQARS 232 Query: 221 VGL 223 +GL Sbjct: 233 LGL 235 >gi|300905258|ref|ZP_07123031.1| hypothetical protein HMPREF9536_03281 [Escherichia coli MS 84-1] gi|300402877|gb|EFJ86415.1| hypothetical protein HMPREF9536_03281 [Escherichia coli MS 84-1] Length = 177 Score = 37.7 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 2/91 (2%) Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 + VS + L + +++G EA GL D + + + +D ++ Sbjct: 1 QKVSAYTGLSVQAVLDT-EAAVYSGQEAIDAGLADELVNSTDAITVMRD-ALDARKSRLS 58 Query: 251 DWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 K + + + + D +P + Sbjct: 59 GGRMTKETQSTTVSATASQADVTDVVPATEG 89 >gi|118602249|ref|YP_903464.1| ATP-dependent Clp protease proteolytic subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|166214707|sp|A1AVN6|CLPP_RUTMC RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|118567188|gb|ABL01993.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 198 Score = 37.7 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IED + ++ ++ + ++ + + ++SPGG AG AI+ +Q +K Sbjct: 34 IIFLVGPIEDYMANVVVAQLLFLESENPDQDIHLYINSPGGLVSAGLAIYDTMQFIKPDV 93 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A + A L + + + + Sbjct: 94 STLCIGQAASMGALLLTAGAKDKRFALPNVRCMIHQPLG---GFSGQASDIDIHAQEILK 150 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 K + + + E Sbjct: 151 VREKLNQIFKLHTSQTIKTIQ--------------------------KDTDRDNFMSANE 184 Query: 218 AKKVGLIDVV 227 A K GLID V Sbjct: 185 ATKYGLIDKV 194 >gi|254447665|ref|ZP_05061131.1| 3-hydroxybutyryl-CoA dehydratase, putative [gamma proteobacterium HTCC5015] gi|198263008|gb|EDY87287.1| 3-hydroxybutyryl-CoA dehydratase, putative [gamma proteobacterium HTCC5015] Length = 269 Score = 37.7 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 22/214 (10%), Positives = 57/214 (26%), Gaps = 24/214 (11%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 +++ ++I +D + A+I+ G A+ + + +K + Sbjct: 37 IVKTAKQIKKDRTVRAVILRGD---GPAFCSG-----LDVMSMKKTPWMIPQLLMKPGTK 88 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 + + A ++ + + + V + Sbjct: 89 ISNLAQDVSL-----IWRDLPVPVIAVTHGKCFGGGFQIALGADFRFSTQDCEFSIMETK 143 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG--Q 230 + + +++ + GR++ EA+K+G++ V Sbjct: 144 WGLIPDMGGSVTLRELVRADIAK---------ELTMTGRVFDAEEAQKIGIVTRVCDDPL 194 Query: 231 EEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 E L + W DLK Sbjct: 195 AEAKDFAAELATRSPDALAAGKKLFQEAWTSDLK 228 >gi|158314330|ref|YP_001506838.1| enoyl-CoA hydratase [Frankia sp. EAN1pec] gi|158109735|gb|ABW11932.1| Enoyl-CoA hydratase/isomerase [Frankia sp. EAN1pec] Length = 288 Score = 37.7 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 6/33 (18%), Positives = 12/33 (36%) Query: 215 GAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 A ++GL+ VGG + + + Sbjct: 203 ARRAFELGLVQRVGGLDTALAWAREIAGLAPLT 235 >gi|327252451|gb|EGE64110.1| clp protease family protein [Escherichia coli STEC_7v] Length = 629 Score = 37.7 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 64/205 (31%), Gaps = 34/205 (16%) Query: 38 VARIAIRGQIEDSQELIERI-ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 V + I +I + + I+ +A+ + + + SPGG + G AI+ A++ + Sbjct: 13 VVYVRIYDEIGGYGVKASALTDEINACGNASEIHLRIHSPGGDIFEGLAIYNALKNHPAK 72 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 K I + MAAS I+ + IV E +++ V Sbjct: 73 K--IVHIEGMAASMASFIAMCGDHIVMPENAMMMIHAPRGVTAGVSG------------- 117 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-G 215 V+ D++D + + + + W G Sbjct: 118 -----------------DVRRFADLMDKLGDTMAETYAGRTGRSKQEITAMMEAETWMDG 160 Query: 216 AEAKKVGLIDVVGGQEEVWQSLYAL 240 E K G D V + + Sbjct: 161 NECKANGFADEVIPAITAMARIESK 185 >gi|116490635|ref|YP_810179.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oenococcus oeni PSU-1] gi|290890048|ref|ZP_06553131.1| hypothetical protein AWRIB429_0521 [Oenococcus oeni AWRIB429] gi|116091360|gb|ABJ56514.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oenococcus oeni PSU-1] gi|290480239|gb|EFD88880.1| hypothetical protein AWRIB429_0521 [Oenococcus oeni AWRIB429] Length = 198 Score = 37.3 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 49/155 (31%), Gaps = 2/155 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I ++G++ED + ++ ++ + D + + ++SPGGS AG AI + +++ Sbjct: 27 IILVQGEVEDQMATSIVAQLLFLDAQDPNKDIYMYINSPGGSVTAGMAIVDTMNFIRSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + S + + D ++ + +K+ Sbjct: 87 QTIVMGMAASMATIIASSGTKGKRFMLPNAEYLIHQPMGGAGAGTQQTDMSIIADQLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + P D L Sbjct: 147 RKRLNNILKENSGKPIEKIEKDTERDHWMDSKETL 181 >gi|307265821|ref|ZP_07547372.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermoanaerobacter wiegelii Rt8.B1] gi|306919216|gb|EFN49439.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermoanaerobacter wiegelii Rt8.B1] Length = 195 Score = 37.3 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + +I D+ +I ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPGGSITAGFAIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + +A L + A A S + L + I ++ Sbjct: 89 VTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQGQATDIKIHAERILKLRD 148 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 K +E+ P +K ++ + Sbjct: 149 KLDKIL------------------------------AENTGQPIEKIKADTERDFFMDAE 178 Query: 217 EAKKVGLIDVV 227 +AK G+ID V Sbjct: 179 DAKAYGIIDEV 189 >gi|153931022|ref|YP_001385267.1| putative Clp protease [Clostridium botulinum A str. ATCC 19397] gi|152927066|gb|ABS32566.1| putative Clp protease [Clostridium botulinum A str. ATCC 19397] Length = 247 Score = 37.3 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 34/258 (13%), Positives = 79/258 (30%), Gaps = 41/258 (15%) Query: 32 EDNSPHVARIAIRGQIE------DSQELI--ERIERISRDDSATALIVSLSSPGGSAYAG 83 VA + + G I D + I +R++ D + + ++S GG + Sbjct: 17 NSVENDVAEMYLYGTIRKGYWWDDEDDCISAKRVKNALADLRDKDVNIHINSGGGDVFES 76 Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 AI +++ + + +AAS +I A+N IV + S++ Sbjct: 77 IAICNLLKQH--GGNITITIDALAASGASVICMAANKIVMPKNSMMMIH----------- 123 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 + ++++ ++ D L + Sbjct: 124 -------KAWTWTDGNADDLRKVAADLDKMDSAVLASYKDRFIGTEEELKAL-------- 168 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 + + +T E K +G D + +E + ++ K N K Sbjct: 169 ---IKESSWFTAEECKSLGFCDEI--LDEQQEPEEPEENIKNSILNKYMNKVKEPQELKQ 223 Query: 264 KNLSISSLLEDTIPLMKQ 281 + + + + I + + Sbjct: 224 EPQVVENKNKQAIQNLFK 241 >gi|169763092|ref|XP_001727446.1| enoyl-CoA hydratase/isomerase family protein [Aspergillus oryzae RIB40] gi|238488953|ref|XP_002375714.1| enoyl-CoA hydratase/isomerase family protein [Aspergillus flavus NRRL3357] gi|83770474|dbj|BAE60607.1| unnamed protein product [Aspergillus oryzae] gi|220698102|gb|EED54442.1| enoyl-CoA hydratase/isomerase family protein [Aspergillus flavus NRRL3357] Length = 272 Score = 37.3 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 4/90 (4%) Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN----YWF 260 ++ + + + G E+ K GL+D VGG EEV + G+ + + Sbjct: 172 DLILEAKRFGGPESVKAGLVDGVGGLEEVLTLIRERGLQKKAATGIYGTMKEEMYRHSLD 231 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + + + E Q + GL AV Sbjct: 232 ILDGHTANLAWREQLEDKKDQAQRDGLKAV 261 >gi|326391008|ref|ZP_08212557.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermoanaerobacter ethanolicus JW 200] gi|325992953|gb|EGD51396.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermoanaerobacter ethanolicus JW 200] Length = 195 Score = 37.3 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + +I D+ +I ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPGGSITAGFAIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + +A L + A A S + L + I ++ Sbjct: 89 VTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQGQATDIKIHAERILKLRD 148 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 K +E+ P +K ++ + Sbjct: 149 KLDKIL------------------------------AENTGQPIEKIKADTERDFFMDAE 178 Query: 217 EAKKVGLIDVV 227 EAK G+ID V Sbjct: 179 EAKAYGIIDEV 189 >gi|77165111|ref|YP_343636.1| hypothetical protein Noc_1634 [Nitrosococcus oceani ATCC 19707] gi|254434754|ref|ZP_05048262.1| Nodulation efficiency protein D [Nitrosococcus oceani AFC27] gi|76883425|gb|ABA58106.1| Protein of unknown function DUF107 [Nitrosococcus oceani ATCC 19707] gi|207091087|gb|EDZ68358.1| Nodulation efficiency protein D [Nitrosococcus oceani AFC27] Length = 459 Score = 37.3 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 73/237 (30%), Gaps = 19/237 (8%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATA 68 + +++ LV L + + ++ + + +RG I + + ++R SA Sbjct: 6 RYFWILGPLVCLFLGGAVPAQQNQNLTGAAFLLDVRGVIGPATS--DYVQRAMARGSAEG 63 Query: 69 ---LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 +I+ + +PGG A I + I A++ + Sbjct: 64 AALIILRMDTPGGLDTAMREIIQDILASPVPVVGYIAPSGARAASAGTYIM----YASHI 119 Query: 126 TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 ++ + + P P +L + + ++ + Sbjct: 120 AAMAPATNLGAATPVHLPMGGRLPEKTPPPGEGEEAG--------TSSEDTLTRKAINDA 171 Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + L ++ + + + EA ++ +ID++ +V L L Sbjct: 172 VAYIKGLAAQRGRNERWAEKAVREAASLSAQEALEMEVIDLIA--RDVSALLKRLDG 226 >gi|229088728|ref|ZP_04220285.1| Enoyl-CoA hydratase/isomerase [Bacillus cereus Rock3-44] gi|228694553|gb|EEL47972.1| Enoyl-CoA hydratase/isomerase [Bacillus cereus Rock3-44] Length = 263 Score = 37.3 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 ++ G EA +VGL++ V + E L K+ ++ P Sbjct: 163 EMMFTGEPLGAEEALQVGLVNHVVSRGEALNKAKELA-----AKMARFSLPALSLMKQSI 217 Query: 265 NLSISSLLEDTIPLMKQ 281 N +S LE+ + + + Sbjct: 218 NKGLSYSLEEGLKIEAE 234 >gi|163792916|ref|ZP_02186892.1| PROBABLE TRIFUNCTONAL: ENOYL-COA HYDRATASE AND DELTA3-CIS-DELTA2-TRANS-ENOYL-COA ISOMERASE AND [alpha proteobacterium BAL199] gi|159181562|gb|EDP66074.1| PROBABLE TRIFUNCTONAL: ENOYL-COA HYDRATASE AND DELTA3-CIS-DELTA2-TRANS-ENOYL-COA ISOMERASE AND [alpha proteobacterium BAL199] Length = 699 Score = 37.3 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 9/91 (9%) Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGG---QEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 ++ GR+ + EA K+G+ID + + L + + Sbjct: 149 AALDLIVSGRLVSEREALKLGMIDAIADGDLIDAAVAKAIELADVGENPR------RSST 202 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 L + L D + + +G+ A Sbjct: 203 LSDGLTEAQANPGLFDAFRKSMEKRARGMNA 233 >gi|254798629|ref|YP_003058293.1| proteolytic subunit 2 of clp protease [Parachlorella kessleri] gi|229915577|gb|ACQ90920.1| proteolytic subunit 2 of clp protease [Parachlorella kessleri] Length = 202 Score = 37.3 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 64/191 (33%), Gaps = 31/191 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G+++D + +LI + ++ ++ + + ++SPGGS G A++ A+ +K+ Sbjct: 32 VLFLCGELDDELANQLIGIMLYLNAEEKNKGIYIYINSPGGSVTCGIAVYDAMNYIKSEV 91 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + ++ L A +A S + Sbjct: 92 TTICVGTAASMASFILAGGAYGKRIALPHSRIMIHQPEG--------------------- 130 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 SE + + L SR++ D+ + E Sbjct: 131 GSQGQASEVLSESQEVMRIRREVGRIYAERTGQPLSRISRDMDRDQ--------FMSARE 182 Query: 218 AKKVGLIDVVG 228 K+ G++D V Sbjct: 183 TKEYGIVDQVA 193 >gi|333023050|ref|ZP_08451114.1| putative enoyl-CoA hydratase/isomerase family protein [Streptomyces sp. Tu6071] gi|332742902|gb|EGJ73343.1| putative enoyl-CoA hydratase/isomerase family protein [Streptomyces sp. Tu6071] Length = 222 Score = 37.3 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 18/47 (38%) Query: 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 SR P ++ GR + EA GL+D V +EV Sbjct: 144 RSRLTPATAHEAMTTGRRYPAPEAMASGLVDAVAAADEVVTEALTRA 190 >gi|134279120|ref|ZP_01765833.1| NfeD family protein [Burkholderia pseudomallei 305] gi|237508682|ref|ZP_04521397.1| NfeD family protein [Burkholderia pseudomallei MSHR346] gi|134249539|gb|EBA49620.1| NfeD family protein [Burkholderia pseudomallei 305] gi|235000887|gb|EEP50311.1| NfeD family protein [Burkholderia pseudomallei MSHR346] Length = 501 Score = 37.3 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 71/230 (30%), Gaps = 14/230 (6%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSL 73 L+ L + + + + I + G I + ++ +ER +R+ + A++ L Sbjct: 24 VLIGLLLACAAVAGAAAAARAPIVVIPVAGAIGPASADFVVRGLERAAREHAPLAIV-QL 82 Query: 74 SSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 +PGG + I +AI + AASAG I AS++ A + +G+ Sbjct: 83 DTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARAASAGTYIVYASHVAAMAPGTNLGAA 142 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + A + + + + + + L Sbjct: 143 SPVQLGIGGQAPAGGRREP--------AGAPGAAGAGATDTESTETRKALHDAAAYIRGL 194 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + + +A ++D++ + L Sbjct: 195 AQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLAN--DPADLAAKLDG 242 >gi|254182381|ref|ZP_04888976.1| NfeD family protein [Burkholderia pseudomallei 1655] gi|184212917|gb|EDU09960.1| NfeD family protein [Burkholderia pseudomallei 1655] Length = 501 Score = 37.3 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 71/230 (30%), Gaps = 14/230 (6%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSL 73 L+ L + + + + I + G I + ++ +ER +R+ + A++ L Sbjct: 24 VLIGLLLACAAAAGAAAAARAPIVVIPVAGAIGPASADFVVRGLERAAREHAPLAIV-QL 82 Query: 74 SSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 +PGG + I +AI + AASAG I AS++ A + +G+ Sbjct: 83 DTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARAASAGTYIVYASHVAAMAPGTNLGAA 142 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + A + + + + + + L Sbjct: 143 SPVQLGIGGQAPAGGRREP--------AGAPGAAGAGATDTESTETRKALHDAAAYIRGL 194 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + + +A ++D++ + L Sbjct: 195 AQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLAN--DPADLAAKLDG 242 >gi|167038050|ref|YP_001665628.1| ATP-dependent Clp protease proteolytic subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040915|ref|YP_001663900.1| ATP-dependent Clp protease proteolytic subunit [Thermoanaerobacter sp. X514] gi|256752437|ref|ZP_05493296.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermoanaerobacter ethanolicus CCSD1] gi|300914951|ref|ZP_07132267.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermoanaerobacter sp. X561] gi|307723815|ref|YP_003903566.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermoanaerobacter sp. X513] gi|320116459|ref|YP_004186618.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|226706551|sp|B0KBA4|CLPP_THEP3 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|226706552|sp|B0K533|CLPP_THEPX RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|166855155|gb|ABY93564.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermoanaerobacter sp. X514] gi|166856884|gb|ABY95292.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748706|gb|EEU61751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermoanaerobacter ethanolicus CCSD1] gi|300889886|gb|EFK85032.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermoanaerobacter sp. X561] gi|307580876|gb|ADN54275.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermoanaerobacter sp. X513] gi|319929550|gb|ADV80235.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 195 Score = 37.3 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 64/191 (33%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + +I D+ +I ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPGGSITAGFAIYDTMQYIKPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + +A L + A A S + L + I ++ Sbjct: 89 VTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQGQATDIKIHAERILKLRD 148 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 K +E+ P +K ++ + Sbjct: 149 KLDKIL------------------------------AENTGQPIEKIKADTERDFFMDAE 178 Query: 217 EAKKVGLIDVV 227 +AK G+ID V Sbjct: 179 DAKAYGIIDEV 189 >gi|266626161|ref|ZP_06119096.1| translocation-enhancing protein TepA [Clostridium hathewayi DSM 13479] gi|288861931|gb|EFC94229.1| translocation-enhancing protein TepA [Clostridium hathewayi DSM 13479] Length = 138 Score = 37.3 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 22/45 (48%) Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 R + + L G + G E K GLID VGG ++ + LY + Sbjct: 88 KRLMLNTEMLTRDLGTVLVGEETVKEGLIDEVGGIKDALRKLYEM 132 >gi|322368650|ref|ZP_08043217.1| enoyl-CoA hydratase [Haladaptatus paucihalophilus DX253] gi|320551381|gb|EFW93028.1| enoyl-CoA hydratase [Haladaptatus paucihalophilus DX253] Length = 274 Score = 37.3 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 19/46 (41%) Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 ++ G I EA +GL+D V +E +Y L + + Sbjct: 171 QAMRLILSGEIIDAEEAYDIGLVDEVCADDEFEDRVYELAGRMADK 216 >gi|108798486|ref|YP_638683.1| 3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein [Mycobacterium sp. MCS] gi|119867587|ref|YP_937539.1| 3-hydroxyacyl-CoA dehydrogenase, NAD-binding [Mycobacterium sp. KMS] gi|108768905|gb|ABG07627.1| 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase [Mycobacterium sp. MCS] gi|119693676|gb|ABL90749.1| 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase [Mycobacterium sp. KMS] Length = 716 Score = 37.3 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 30/242 (12%), Positives = 80/242 (33%), Gaps = 18/242 (7%) Query: 63 DDSATALI-VSLSSPGGSAYAG-----EAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116 D+ A ++ ++L P GSA E++ A+ +++ K +T V +A + Sbjct: 10 DEDADGIVTLTLDDPTGSANVMNDHYRESMHNAVNRLEAEKDSVTGVVLASAKKTFFAGG 69 Query: 117 ASNIIVA-AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS-------PMKAEPSPFS 168 ++ + + L+ LG+ + + + + Sbjct: 70 DLKGLIKLGPEDAAEAFDLAESTKADLRRLETLGIPVVAAINGAALGGGLEIALATHHRI 129 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSE---SRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 + + V + V V+ + +LS G ++ +A +GL+D Sbjct: 130 AADVRGVVIGLPEVTLGLLPGGGGVARTVRMFGVQKAFAEILSTGARFSPPKALDIGLVD 189 Query: 226 VV-GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 + +E+ + + ++ W+ + + + P + ++ Sbjct: 190 QLVQSVDELIPAAKKWIKENPEAGVQPWDAKGYKLPGGTPASPGLAAILPSFPATLKKQL 249 Query: 285 QG 286 +G Sbjct: 250 KG 251 >gi|226195196|ref|ZP_03790787.1| NfeD family protein [Burkholderia pseudomallei Pakistan 9] gi|254198801|ref|ZP_04905221.1| NfeD family protein [Burkholderia pseudomallei S13] gi|254262324|ref|ZP_04953189.1| NfeD family protein [Burkholderia pseudomallei 1710a] gi|254299883|ref|ZP_04967331.1| NfeD family protein [Burkholderia pseudomallei 406e] gi|157809777|gb|EDO86947.1| NfeD family protein [Burkholderia pseudomallei 406e] gi|169655540|gb|EDS88233.1| NfeD family protein [Burkholderia pseudomallei S13] gi|225933001|gb|EEH28997.1| NfeD family protein [Burkholderia pseudomallei Pakistan 9] gi|254213326|gb|EET02711.1| NfeD family protein [Burkholderia pseudomallei 1710a] Length = 501 Score = 37.3 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 71/230 (30%), Gaps = 14/230 (6%) Query: 16 SLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSL 73 L+ L + + + + I + G I + ++ +ER +R+ + A++ L Sbjct: 24 VLIGLLLACAAVAGAAAAARAPIVVIPVAGAIGPASADFVVRGLERAAREHAPLAIV-QL 82 Query: 74 SSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 +PGG + I +AI + AASAG I AS++ A + +G+ Sbjct: 83 DTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARAASAGTYIVYASHVAAMAPGTNLGAA 142 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + A + + + + + + L Sbjct: 143 SPVQLGIGGQAPAGGRREP--------AGAPGAAGAGATDTESIETRKALHDAAAYIRGL 194 Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + + +A ++D++ + L Sbjct: 195 AQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLAN--DPADLAAKLDG 242 >gi|329735373|gb|EGG71665.1| glycine dehydrogenase (decarboxylating) [Staphylococcus epidermidis VCU045] gi|329737245|gb|EGG73499.1| glycine dehydrogenase (decarboxylating) [Staphylococcus epidermidis VCU028] Length = 303 Score = 37.3 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Query: 38 VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 + + ++G I D ++L + I DD+ A+ V + GS E I I+ Sbjct: 39 IIEVDLKGTITDLEKLEQLI-----DDNTAAVAVQYPNFYGSIEDLEQINNYIKD 88 >gi|15606868|ref|NP_214248.1| nodulation competitiveness protein NfeD [Aquifex aeolicus VF5] gi|2984101|gb|AAC07639.1| nodulation competitiveness protein NfeD [Aquifex aeolicus VF5] Length = 425 Score = 37.3 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 33/261 (12%), Positives = 77/261 (29%), Gaps = 39/261 (14%) Query: 15 LSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIVS 72 + L++L V+FS+ + G I + + I++ ++ +++ Sbjct: 3 IILLSLFWVFFSFG--------KIFVAQWEGPITPTTADYVERTIQKAQKEGGTLYILL- 53 Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 L++PGG E++ + IQ + I Sbjct: 54 LNTPGGLV---ESMRKIIQSFETAPFPIVVYVYPPGGRAASAG----------------- 93 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 ++ ++ E K +M + V FVR Sbjct: 94 -----AIITIAADIAAMAPGTNIGAAHPVLATPQGREKKEKGKDVMMEKVLQDMLAFVRA 148 Query: 193 VSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGG-QEEVWQSLYALGVDQSIRKIK 250 +++ + + + + EA K G+ID++ E++ L + + + Sbjct: 149 IAKEKGRNVKVVEKMVKESLSLSAEEALKKGVIDLIAYNLEDLLTKLEGK-KVKKLNAVY 207 Query: 251 DWNPPKNYWFCDLKNLSISSL 271 + +L L Sbjct: 208 EIRTKGKEVVFLKPSLREEFL 228 >gi|301299398|ref|ZP_07205678.1| drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853004|gb|EFK80608.1| drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 478 Score = 37.3 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 12/154 (7%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDD- 64 + I + +L ++ L F+ + + PHV +++ G I L+ + S Sbjct: 175 RDIFFIFTVLLVIGLLFAIFTLENVNKITRPHVDVLSVLGSIIGFSSLVAGVSFASESGW 234 Query: 65 ---SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNII 121 LI+ I A +++K PV+ + Sbjct: 235 TSFKVLGLIL--------VAIIVLILYARRQLKLENPVLNLRVFSKVNFRTGAFLVMIDF 286 Query: 122 VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 +S+ + + + + + + Sbjct: 287 GIILSSMYLLPQFIQNAMLLPVAMTGIIMLPGGI 320 >gi|320161989|ref|YP_004175214.1| hypothetical protein ANT_25880 [Anaerolinea thermophila UNI-1] gi|319995843|dbj|BAJ64614.1| hypothetical protein ANT_25880 [Anaerolinea thermophila UNI-1] Length = 280 Score = 37.3 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 67/182 (36%), Gaps = 19/182 (10%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 I+DS++++ I+ D + + L +PGG A E I A+ + PV V Sbjct: 67 IDDSEQVLRAIK--LTDPKVP-IDIILHTPGGLVLAAEQIANALSRHPA--PVTVFVPHY 121 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 A S G LI+ A+N IV E +++G + L L + Sbjct: 122 AMSGGTLIALAANQIVMDENAVLGPVDPQLGQYPAASILKVLEQK-------DINRVDDQ 174 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR-----IWTGAEAKKV 221 + A + M V ++ S+ L GR T EA+++ Sbjct: 175 TLILADVARKAMVQVKETVRRIACCHYSQEVAERLA--DELPSGRWTHDYPITVEEAREL 232 Query: 222 GL 223 GL Sbjct: 233 GL 234 >gi|257056800|ref|YP_003134632.1| enoyl-CoA hydratase/carnithine racemase [Saccharomonospora viridis DSM 43017] gi|256586672|gb|ACU97805.1| enoyl-CoA hydratase/carnithine racemase [Saccharomonospora viridis DSM 43017] Length = 220 Score = 37.3 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 20/39 (51%) Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 ++ GR + G EA ++GL+D V ++EV S Sbjct: 150 AAVASMTTGRRFGGHEAAEIGLVDAVAEEDEVLSSACER 188 >gi|225181795|ref|ZP_03735232.1| protein of unknown function DUF107 [Dethiobacter alkaliphilus AHT 1] gi|225167468|gb|EEG76282.1| protein of unknown function DUF107 [Dethiobacter alkaliphilus AHT 1] Length = 452 Score = 37.3 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 6/86 (6%) Query: 3 FVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ--ELIERIERI 60 F + K+ +V+++++T+ S V + + G I Q L ++E Sbjct: 7 FFICKV---FVIIAIITMHFSGMFTSRIDAAADRPVWVVNLDGTITAGQFNFLQRQVESA 63 Query: 61 SRDDSATALIVSLSSPGGSAYAGEAI 86 + A ++ +++PGG A I Sbjct: 64 EEN-GAQLFVLVMNTPGGLVDATMKI 88 >gi|217425450|ref|ZP_03456943.1| NfeD family protein [Burkholderia pseudomallei 576] gi|217391413|gb|EEC31442.1| NfeD family protein [Burkholderia pseudomallei 576] Length = 504 Score = 37.3 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 74/239 (30%), Gaps = 14/239 (5%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDD 64 ++ V++ L+ + + + I + G I + ++ +ER +R+ Sbjct: 18 RLARAAVLIGLLLACAAAAAAAGAAAAARAPIVVIPVAGAIGPASADFVVRGLERAAREH 77 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVA 123 + A++ L +PGG + I +AI + AASAG I AS++ Sbjct: 78 APLAIV-QLDTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARAASAGTYIVYASHVAAM 136 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 A + +G+ + + A + + + + Sbjct: 137 APGTNLGAASPVQLGIGGQAPAGGRREP--------AGAPGAAGAGATDTESTETRKALH 188 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + + L + + +A ++D++ + L Sbjct: 189 DAAAYIRGLAQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLAN--DPADLAAKLDG 245 >gi|163782276|ref|ZP_02177274.1| hypothetical protein HG1285_05800 [Hydrogenivirga sp. 128-5-R1-1] gi|159882309|gb|EDP75815.1| hypothetical protein HG1285_05800 [Hydrogenivirga sp. 128-5-R1-1] Length = 290 Score = 37.3 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 66/211 (31%), Gaps = 10/211 (4%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+ ++ I D +I +PGG A A I A+ K K VI + M Sbjct: 75 IEDSERVLRAIRMTPDDMPIDFVI---HTPGGLALAATQIANALAKHKAPVRVIVPHYAM 131 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + G LI+ +++ I+ +++G + L L Sbjct: 132 SG--GTLIALSADEIIMDPNAVLGPVDPQIGQMPAASILKVLEKKE---PKDIDDQTLIL 186 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL--I 224 QM + + + + R + T K++GL I Sbjct: 187 ADVSEKAIRQMKEYLTNLLTSKGMEKEKAERIAEELAVGKFTHDYPLTADYLKELGLNVI 246 Query: 225 DVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255 V + LY V ++ P Sbjct: 247 TEVPEEVYALMELYEQPVGAQPPSVQYIPVP 277 >gi|126668931|ref|ZP_01739872.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter sp. ELB17] gi|126626594|gb|EAZ97250.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter sp. ELB17] Length = 211 Score = 37.3 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 43 VIFMVGPVEDHMANLVVAQLLFLESENPDKDIHLYINSPGGSVSAGMSIYDTMQFIKPDV 102 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A+ S V L Y ++ I ++ Sbjct: 103 ATLCVGQAASMGAFLLAGGAAGKRACLPNSRVMIHQPLGGYQGQATDIEIHTREILKIRH 162 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 +++ + Sbjct: 163 ------------------------------TLNSILAHHTGQDLETISRDTDRDNFMDPT 192 Query: 217 EAKKVGLIDVVGG 229 +AK GLID V Sbjct: 193 QAKAYGLIDSVLD 205 >gi|78044452|ref|YP_361259.1| hypothetical protein CHY_2465 [Carboxydothermus hydrogenoformans Z-2901] gi|77996567|gb|ABB15466.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans Z-2901] Length = 280 Score = 37.3 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 5/105 (4%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS++++ I D + L +PGG A E I A++K + V + Sbjct: 72 IEDSEQILRAIRLTPDDMPID---LVLHTPGGLVLAAEQIAEALRKHPAK--VTVFIPHY 126 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 A S G LI+ A++ IV E ++ G + L + Sbjct: 127 AMSGGTLIALAADEIVMDENAVAGPVDPQLGEYPAASILKVVEQK 171 >gi|78778230|ref|YP_394545.1| ATP-dependent Clp protease proteolytic subunit [Sulfurimonas denitrificans DSM 1251] gi|124015202|sp|Q30NX1|CLPP_SULDN RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|78498770|gb|ABB45310.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sulfurimonas denitrificans DSM 1251] Length = 196 Score = 37.3 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G++ D+ ++ ++ + +D + ++SPGG AG AI+ + ++ Sbjct: 29 IIMLSGEVNDAVASSIVAQMLFLEAEDPEKDIYFYINSPGGVVTAGMAIYDTMNYIRPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 I + A L S A A + + L Sbjct: 89 ATICVGQAASMGAFLLSSGAKGKRYALPHARIMIHQPLG 127 >gi|323953618|gb|EGB49480.1| peptidase S49 [Escherichia coli H263] Length = 174 Score = 37.3 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 1/102 (0%) Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + L + GV I + S K + + F + + Q MQ +D++ F V+ Sbjct: 1 SHVSYAGHLAQAGVDITLIYSGAHKVDGNQFEALPAEVRQDMQQRIDAARRMFAEKVAMF 60 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 + D ++ ++ G + GL D + + + Sbjct: 61 TGLSVDAV-TGTEAAVFEGQSGIEAGLADELINASDAISVMA 101 >gi|53721651|ref|YP_110636.1| hypothetical protein BPSS0615 [Burkholderia pseudomallei K96243] gi|52212065|emb|CAH38072.1| putative membrane protein [Burkholderia pseudomallei K96243] Length = 504 Score = 37.3 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 74/239 (30%), Gaps = 14/239 (5%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDD 64 ++ V++ L+ + + + I + G I + ++ +ER +R+ Sbjct: 18 RLARAAVLIGLLLACAAAAAAAGAAAAARAPIVVIPVAGAIGPASADFVVRGLERAAREH 77 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVA 123 + A++ L +PGG + I +AI + AASAG I AS++ Sbjct: 78 APLAIV-QLDTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARAASAGTYIVYASHVAAM 136 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 A + +G+ + + A + + + + Sbjct: 137 APGTNLGAASPVQLGIGGQAPAGGRREP--------AGAPGAAGAGATDTESIETRKALH 188 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + + L + + +A ++D++ + L Sbjct: 189 DAAAYIRGLAQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLAN--DPADLAAKLDG 245 >gi|188586359|ref|YP_001917904.1| protein of unknown function DUF107 [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351046|gb|ACB85316.1| protein of unknown function DUF107 [Natranaerobius thermophilus JW/NM-WN-LF] Length = 462 Score = 37.3 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 75/210 (35%), Gaps = 5/210 (2%) Query: 5 LKKIK-TRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE-DSQELIER-IERIS 61 L+ +K T +++ + L+ + SS ++ P + + I + + +E+ IE Sbjct: 9 LRFLKVTSILVILVFLLSAIQMPVSSEENNSDPKYKLLTVEDTITAGTSQYLEQGIENAI 68 Query: 62 RDDSATALIVSLSSPGGSA-YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 + +I+ L++PGG + + + + ++ +AASAG I + ++ Sbjct: 69 -NQGYDGVIIVLNTPGGLVDATLDIMGKIVNSPIPVITFVSPSGAIAASAGTFILVSGHV 127 Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 S G+ + P + + +I + + ++ Sbjct: 128 AAMTPGSTCGAAMPVTMQPGEEGTQEADQKTINFLAGHLKSVAREQGRPEEVVEKFVTEN 187 Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210 + ++ + V E D L G Sbjct: 188 LTLNASEALEKNVIEFNEPNLDALLTAIHG 217 >gi|220923283|ref|YP_002498585.1| NAD-binding 3-hydroxyacyl-CoA dehydrogenase [Methylobacterium nodulans ORS 2060] gi|219947890|gb|ACL58282.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Methylobacterium nodulans ORS 2060] Length = 691 Score = 37.3 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 32/76 (42%), Gaps = 1/76 (1%) Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 + +GR+ EA +GL+D V + + +L + R++ + P+ + Sbjct: 156 IGEGRVLKAPEAHDLGLLDEVVTGDLLVAAL-ERAPHVAKRRVSELPVPRGDAAAEALAF 214 Query: 267 SISSLLEDTIPLMKQT 282 S + ++P ++ Sbjct: 215 SRARKAAKSVPAIEAA 230 >gi|47027428|gb|AAT08791.1| capsid protein [Wolbachia phage WO] Length = 92 Score = 37.3 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 V+L++ +R + +K G + G +A ++GL D V E Sbjct: 1 EMLVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFIN 48 >gi|148255923|ref|YP_001240508.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bradyrhizobium sp. BTAi1] gi|166201801|sp|A5EKA8|CLPP_BRASB RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|146408096|gb|ABQ36602.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bradyrhizobium sp. BTAi1] Length = 210 Score = 37.3 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 25/193 (12%), Positives = 58/193 (30%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED ++ ++ + ++ + + ++SPGG +G AI+ +Q ++ Sbjct: 37 IIFVTGPVEDGMATLIVAQLLFLEAENPKKEIAMYINSPGGVVTSGLAIYDTMQFIRPAV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + G + F P + + + + Sbjct: 97 ST--------------LCTGQAASMGSLLLCAGHKDMRFSLPNSRIMVHQPSGGFQG--- 139 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGA 216 + + + S + + Y L + T Sbjct: 140 -------------QATDIMLHAQEILSLKKRLNEIYVKHTGQSYKAIEDALERDKFLTAE 186 Query: 217 EAKKVGLIDVVGG 229 A + GLID V Sbjct: 187 AAAEFGLIDKVID 199 >gi|160878535|ref|YP_001557503.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium phytofermentans ISDg] gi|160427201|gb|ABX40764.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium phytofermentans ISDg] Length = 193 Score = 37.3 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 54/181 (29%), Gaps = 31/181 (17%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + ++ ++ + +D + + ++SPGGS AG AI+ + +K I + Sbjct: 39 VSASVIVAQLLFLEAEDPGKDISLYINSPGGSVTAGMAIYDTMNYIKCDVSTICIGMAAS 98 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L A A + V K + + +++ K Sbjct: 99 MGAFLLAGGAKGKRFALPNAEVMIHQPSG---GAKGQATDIQIVAENILKIKKKLNTIL- 154 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226 SE+ P + + EAK G+ID Sbjct: 155 --------------------------SENTGKPLEVVEVDTERDYYMSAEEAKNYGIIDS 188 Query: 227 V 227 V Sbjct: 189 V 189 >gi|228476130|ref|ZP_04060838.1| glycine dehydrogenase (decarboxylating) [Staphylococcus hominis SK119] gi|228269953|gb|EEK11433.1| glycine dehydrogenase (decarboxylating) [Staphylococcus hominis SK119] Length = 450 Score = 37.3 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 5/55 (9%) Query: 38 VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 + + + G I D ++L + I DD A+ V + G+ E I I+ Sbjct: 184 IVEVDLNGTITDLEKLEQAI-----DDDTAAVAVQYPNFYGTIEDLEKIHSYIEN 233 >gi|115401718|ref|XP_001216447.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114190388|gb|EAU32088.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 666 Score = 37.3 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKN 257 ++ + R + GA++ K GL+D VGG +E + G+ + + Sbjct: 566 DLILEARRFGGADSVKAGLVDAVGGLDEALAMIRQRGLTKKPATGIYGTMKEE 618 >gi|118586974|ref|ZP_01544406.1| ATP-dependent Clp protease, proteolytic subunit [Oenococcus oeni ATCC BAA-1163] gi|45597799|emb|CAE54287.1| ClpP protease [Oenococcus oeni] gi|118432596|gb|EAV39330.1| ATP-dependent Clp protease, proteolytic subunit [Oenococcus oeni ATCC BAA-1163] Length = 202 Score = 37.3 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 49/155 (31%), Gaps = 2/155 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I ++G++ED + ++ ++ + D + + ++SPGGS AG AI + +++ Sbjct: 27 IILVQGEVEDQMATSIVAQLLFLDAQDPNKDIYMYINSPGGSVTAGMAIVDTMNFIRSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + + S + + D ++ + +K+ Sbjct: 87 QTIVMGMAASMATIIASSGTKGKRFMLPNAEYLIHQPMGGAGAGTQQTDMSIIADQLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + P D L Sbjct: 147 RKRLNNILKENSGKPIEKIEKDTERDHWMDSKETL 181 >gi|27468139|ref|NP_764776.1| glycine dehydrogenase subunit 1 [Staphylococcus epidermidis ATCC 12228] gi|57867046|ref|YP_188677.1| glycine dehydrogenase subunit 1 [Staphylococcus epidermidis RP62A] gi|282876038|ref|ZP_06284905.1| glycine dehydrogenase (decarboxylating) [Staphylococcus epidermidis SK135] gi|293366503|ref|ZP_06613180.1| glycine dehydrogenase (decarboxylating) subunit 1 [Staphylococcus epidermidis M23864:W2(grey)] gi|37537793|sp|Q8CMM0|GCSPA_STAES RecName: Full=Probable glycine dehydrogenase [decarboxylating] subunit 1; AltName: Full=Glycine cleavage system P-protein subunit 1; AltName: Full=Glycine decarboxylase subunit 1 gi|81674491|sp|Q5HP13|GCSPA_STAEQ RecName: Full=Probable glycine dehydrogenase [decarboxylating] subunit 1; AltName: Full=Glycine cleavage system P-protein subunit 1; AltName: Full=Glycine decarboxylase subunit 1 gi|27315685|gb|AAO04820.1|AE016748_54 glycine dehydrogenase (decarboxylating) subunit 1 [Staphylococcus epidermidis ATCC 12228] gi|57637704|gb|AAW54492.1| glycine cleavage system P protein, subunit 1 [Staphylococcus epidermidis RP62A] gi|281295063|gb|EFA87590.1| glycine dehydrogenase (decarboxylating) [Staphylococcus epidermidis SK135] gi|291319272|gb|EFE59641.1| glycine dehydrogenase (decarboxylating) subunit 1 [Staphylococcus epidermidis M23864:W2(grey)] gi|329725368|gb|EGG61851.1| glycine dehydrogenase (decarboxylating) [Staphylococcus epidermidis VCU144] Length = 448 Score = 37.3 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Query: 38 VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 + + ++G I D ++L + I DD+ A+ V + GS E I I+ Sbjct: 184 IIEVDLKGTITDLEKLEQLI-----DDNTAAVAVQYPNFYGSIEDLEQINNYIKD 233 >gi|222152607|ref|YP_002561782.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus uberis 0140J] gi|254763804|sp|B9DTU8|CLPP_STRU0 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|222113418|emb|CAR41093.1| putative ATP-dependent Clp protease proteolytic subunit [Streptococcus uberis 0140J] Length = 196 Score = 37.3 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 47/155 (30%), Gaps = 2/155 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 27 IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S + + D V+ + +K+ Sbjct: 87 QTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGTGSGTQQTDMAIVAEQLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + D L Sbjct: 147 RKRLEKILSDNSGKTIKQIHKDAERDYWMDAKETL 181 >gi|189463031|ref|ZP_03011816.1| hypothetical protein BACCOP_03733 [Bacteroides coprocola DSM 17136] gi|198276521|ref|ZP_03209052.1| hypothetical protein BACPLE_02716 [Bacteroides plebeius DSM 17135] gi|237708586|ref|ZP_04539067.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|260642222|ref|ZP_05414941.2| putative prophage L54a, Clp protease [Bacteroides finegoldii DSM 17565] gi|189430313|gb|EDU99297.1| hypothetical protein BACCOP_03733 [Bacteroides coprocola DSM 17136] gi|198270609|gb|EDY94879.1| hypothetical protein BACPLE_02716 [Bacteroides plebeius DSM 17135] gi|229457515|gb|EEO63236.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|260623181|gb|EEX46052.1| putative prophage L54a, Clp protease [Bacteroides finegoldii DSM 17565] Length = 368 Score = 37.3 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 70/212 (33%), Gaps = 38/212 (17%) Query: 26 SWSSHVEDNSPHVARIAIRGQIEDSQELI--ERIERISRDDSA-TALIVSLSSPGGSAYA 82 S ++ + + I + G I D E+ + + + + V ++S GG Y+ Sbjct: 24 SRFFNITTSDDGTSTIFLYGDIGDYTEVQSGRIAQELMEAERVSRRIHVRINSNGGEVYS 83 Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 G AIF A++ + V +AAS +I+ + ++ + + V K Sbjct: 84 GIAIFNALRHSQADIR--IYVDGIAASMASVIALCGKPVEMSKYARLMLHSVSGGCYGNK 141 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 L + I+S++ + +E + + Sbjct: 142 QDLQRCMEEIESLE------------------------------GSLSEIYAERLGMSKE 171 Query: 203 KTLVLS---DGRIWTGAEAKKVGLIDVVGGQE 231 + + T EA +G ID + + Sbjct: 172 EVKQTYFDGEDHWLTAKEALDLGFIDDIYDAD 203 >gi|78043074|ref|YP_359188.1| ATP-dependent Clp protease proteolytic subunit [Carboxydothermus hydrogenoformans Z-2901] gi|90101405|sp|Q3AF96|CLPP_CARHZ RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|77995189|gb|ABB14088.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Carboxydothermus hydrogenoformans Z-2901] Length = 195 Score = 37.3 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 65/194 (33%), Gaps = 33/194 (17%) Query: 41 IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 I I G I+D + +I ++ + +D + + ++SPGG AG AI+ +Q +K Sbjct: 31 IFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPGGVITAGMAIYDTMQYIKPDVS 90 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 I + A L + A + + + L +D Sbjct: 91 TICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQGQATDIDIHARE------- 143 Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAE 217 + L+++ P +K ++ + + AE Sbjct: 144 -----------------------ILRMRDMLNELLTKHTGQPKEKIERDTERDFFMSAAE 180 Query: 218 AKKVGLIDVVGGQE 231 AK+ G+ID V Sbjct: 181 AKEYGIIDEVITVR 194 >gi|303248889|ref|ZP_07335137.1| Enoyl-CoA hydratase/isomerase [Desulfovibrio fructosovorans JJ] gi|302489688|gb|EFL49623.1| Enoyl-CoA hydratase/isomerase [Desulfovibrio fructosovorans JJ] Length = 267 Score = 37.3 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 26/64 (40%) Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 ++ EA +G++D + + + + + ++ + +L +L S L Sbjct: 179 FSAEEALDLGIVDKIVPAARLEEEAIKVANNYREPQVSTMLAIRKLLKSNLDDLRRSLEL 238 Query: 273 EDTI 276 ED + Sbjct: 239 EDLL 242 >gi|237755491|ref|ZP_04584113.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sulfurihydrogenibium yellowstonense SS-5] gi|237692355|gb|EEP61341.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sulfurihydrogenibium yellowstonense SS-5] Length = 201 Score = 37.3 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 59/189 (31%), Gaps = 33/189 (17%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 I I + ++ ++ + +D + + ++SPGG AG AI+ + +K I Sbjct: 40 PIDDHIANL--VVAQLLFLESEDPDKDIYMYINSPGGVVTAGLAIYDTMNYIKPDVVTIC 97 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + A L + A + + + L + ++ Sbjct: 98 MGQAASMGAFLLSAGAKGKRYSLPNARIMIHQPLGGFQGQATDIEIHAKE---------- 147 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220 + +++ P +K ++ + + EAK+ Sbjct: 148 --------------------ILRLKRMLNEYLAKHTGQPIEKIEADTERDYFMSAEEAKE 187 Query: 221 VGLIDVVGG 229 GLID V Sbjct: 188 YGLIDKVIY 196 >gi|227892362|ref|ZP_04010167.1| MFS family major facilitator transporter [Lactobacillus salivarius ATCC 11741] gi|227865769|gb|EEJ73190.1| MFS family major facilitator transporter [Lactobacillus salivarius ATCC 11741] Length = 478 Score = 37.3 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISR 62 + I + +L ++ L F+ + + PHV +++ G I L+ + S Sbjct: 175 RDIFFIFTVLLVIGLLFAIFTLKNVNKITRPHVDVLSVLGSIIGFSSLVAGVSFASE 231 >gi|316936709|gb|ADU60349.1| capsid protein [Wolbachia phage WO] Length = 137 Score = 37.3 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 + +++ +Q VD Y F++L++ +R + +K G + G +A ++GL D Sbjct: 2 HMEPMTSESLGSLQKEVDRLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLAD 60 Query: 226 VV 227 + Sbjct: 61 GM 62 >gi|52843152|ref|YP_096951.1| hypothetical protein lpg2958 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630263|gb|AAU29004.1| transmembrane protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 501 Score = 37.3 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 34/247 (13%), Positives = 85/247 (34%), Gaps = 33/247 (13%) Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQ-ELIERIERISRDD 64 K ++T + + L ++ S + + I+G I + + +ER + ++D Sbjct: 65 KLMQTSCIFIFLTLFLLIGLQTSFAA-----KIVELNIKGPIGPATVDYMERGIKSAQDA 119 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 +++ + +PGG ++ IQ I +A Sbjct: 120 DL--IVILIDTPGGL---YDSTRNIIQLFLLSDVPIVTYVSPTG----------ARAASA 164 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 T L+ + + P + + K M++ V Sbjct: 165 GTYLMYASTIAAMAPGTQMGAASPVSLGTGFSEGEK----------DEKKKSTMENKVTH 214 Query: 185 SYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGV 242 +R +++ R D +++G+ T EA G+++ + ++++ ++ + V Sbjct: 215 DAVATIRSLAQLRGRDPDFAEKAVTEGKSITANEALSKGVVNYIAKNRDDLLSQIHGIKV 274 Query: 243 DQSIRKI 249 Q+ + I Sbjct: 275 SQNNKTI 281 >gi|314936343|ref|ZP_07843690.1| glycine dehydrogenase (decarboxylating) [Staphylococcus hominis subsp. hominis C80] gi|313654962|gb|EFS18707.1| glycine dehydrogenase (decarboxylating) [Staphylococcus hominis subsp. hominis C80] Length = 450 Score = 37.3 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 5/55 (9%) Query: 38 VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 + + + G I D ++L + I DD A+ V + G+ E I I+ Sbjct: 184 IVEVDLNGTITDLEKLEQAI-----DDDTAAVAVQYPNFYGTIEDLEKIHSYIEN 233 >gi|251810952|ref|ZP_04825425.1| glycine dehydrogenase subunit 1 [Staphylococcus epidermidis BCM-HMP0060] gi|251805462|gb|EES58119.1| glycine dehydrogenase subunit 1 [Staphylococcus epidermidis BCM-HMP0060] Length = 448 Score = 37.3 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Query: 38 VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 + + ++G I D ++L + I DD+ A+ V + GS E I I+ Sbjct: 184 IIEVDLKGTITDLEKLEQLI-----DDNTAAVAVQYPNFYGSIEDLEQINNYIKD 233 >gi|195117086|ref|XP_002003080.1| GI17722 [Drosophila mojavensis] gi|193913655|gb|EDW12522.1| GI17722 [Drosophila mojavensis] Length = 281 Score = 37.3 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDV-VGGQEEVWQSLYA-LGVDQSIRKIKDWNPPK 256 + L+ GR++T EA ++GL+D G +EE + +G + I + Sbjct: 175 PRREAERALNQGRMFTTDEALQIGLVDEAAGTKEEALEKCAQFIGTFAKVNPIARALTKQ 234 Query: 257 NYWFCDLKNLSISSL 271 + +L+ L Sbjct: 235 QFRAAELEQLESERA 249 >gi|254523177|ref|ZP_05135232.1| peptidase S14, ClpP [Stenotrophomonas sp. SKA14] gi|219720768|gb|EED39293.1| peptidase S14, ClpP [Stenotrophomonas sp. SKA14] Length = 245 Score = 37.3 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 59/193 (30%), Gaps = 37/193 (19%) Query: 39 ARIAIRGQIE----DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 A I + G I D E + D + + + SPGG +A ++ AI + Sbjct: 29 ATIYLHGVIGGWWGDIDETMFAQAMAGIDADV--IHLRIDSPGGDVFAARSMMTAIAQH- 85 Query: 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKS 154 + VI + +AASA + A + + ++ + + Sbjct: 86 -KATVIAHIDGLAASAMTGVCMACDKVEISQGAGFMIHN------------------AWT 126 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 + + + D + ++V + + +T Sbjct: 127 ITVGNKADMIKTGELLAKIDAGLAGDYTRRTGKDQSQIVQW-----------MDEETWFT 175 Query: 215 GAEAKKVGLIDVV 227 EAK+ G D V Sbjct: 176 ADEAKEHGFADEV 188 >gi|294101566|ref|YP_003553424.1| protein of unknown function DUF114 [Aminobacterium colombiense DSM 12261] gi|293616546|gb|ADE56700.1| protein of unknown function DUF114 [Aminobacterium colombiense DSM 12261] Length = 273 Score = 36.9 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 70/177 (39%), Gaps = 9/177 (5%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+E++ I S +I +PGG A E I A++K + V+ + M Sbjct: 67 IEDSEEVLRAIRLTSEGTPIDLII---HTPGGLLLAAEQIAYALKKHPAKVTVVVPHYAM 123 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + G LI+ A++ I+ + +++G + L + S ++ Sbjct: 124 SG--GTLIALAADEILMDKHAVLGPVDPQIGQYPAASILRAVEEKP----VSEVEDTTLI 177 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 ++V+ KAV+ + V + + + + T EA+ +GL Sbjct: 178 LADVSRKAVKQTRSFVFNLLKDRMGDEKATELALVLTEGRWTHDYPITAEEAQALGL 234 >gi|259908701|ref|YP_002649057.1| ATP-dependent Clp protease proteolytic subunit [Erwinia pyrifoliae Ep1/96] gi|224964323|emb|CAX55832.1| ATP-dependent Clp protease proteolytic subunit [Erwinia pyrifoliae Ep1/96] Length = 282 Score = 36.9 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 28/259 (10%), Positives = 73/259 (28%), Gaps = 40/259 (15%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL-IERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + + ++ + G + + RI R + V+++SPGG + G AI+ Sbjct: 35 KAAKSDENSISVFDVIGADWYDEGVTASRIAAALRSIGGEDVTVNINSPGGDMFEGLAIY 94 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 +++ K + + A++A + + + L+ Sbjct: 95 NLLRE-YEGKVTVKVLGLAASAASIIAMAGDEVQIGRAAFLMIHNC-------------- 139 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 + +E+ P M + + Sbjct: 140 -----WTFAMGNRHEMAKIAAELEPFDRAMNDIYG------------ARTGLDAATIETM 182 Query: 208 SDGRIWT-GAEAKKVGLIDVVGGQEEVWQS----LYALGVDQSIRKIKD--WNPPKNYWF 260 + + G+E+ + G D + +E+ AL ++ D + + Sbjct: 183 MNAETYIGGSESVEKGFADRLLTADEILDDDESPAAALRKIDAMLAKTDAPRSERRKLLK 242 Query: 261 CDLKNLSISSLLEDTIPLM 279 + + + +P Sbjct: 243 ALTGSKPGAVATPEGMPGA 261 >gi|239813853|ref|YP_002942763.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Variovorax paradoxus S110] gi|239800430|gb|ACS17497.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Variovorax paradoxus S110] Length = 711 Score = 36.9 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 7/89 (7%) Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS--LYALGVDQSIRKIKDWNPPKNYWF 260 ++ GR EA +GL+D +G + + YA + + ++ + Sbjct: 159 ALELVLSGRHAGAKEALSLGLVDRLGNEADARAEGLAYAQELVAAKAPVR-----RTREA 213 Query: 261 CDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 L + S + K +GL++ Sbjct: 214 GGLADKEASRAALEAARADTARKSRGLFS 242 >gi|206891158|ref|YP_002248435.1| membrane-bound serine protease [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743096|gb|ACI22153.1| membrane-bound serine protease [Thermodesulfovibrio yellowstonii DSM 11347] Length = 436 Score = 36.9 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 23/165 (13%), Positives = 59/165 (35%), Gaps = 5/165 (3%) Query: 14 MLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED--SQELIERIERISRDDSATALIV 71 +LSL+ + + + + + G I ++ I+ I++ +A A+I+ Sbjct: 11 LLSLIKYFICLLISFLSTSVYAKEIIVLTVNGVINPPHAEYTIKGIQKAHE-QNAEAVII 69 Query: 72 SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV--HEMAASAGYLISCASNIIVAAETSLV 129 L +PGG + +I + + + V A++ ++ A +A T++ Sbjct: 70 QLDTPGGLDTSMRSIIKEMLNSQIPIVVYVSPKGARAASAGAFITLAAHIAAMAPGTNIG 129 Query: 130 GSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 + V + + + + + + E +A Sbjct: 130 AAHPVAMGGEKMDKTMAEKITNDAVAYIKSIAKQRGRNIEWAEQA 174 >gi|34762173|ref|ZP_00143180.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27888134|gb|EAA25193.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 344 Score = 36.9 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 13/104 (12%) Query: 41 IAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 I I GQI + ++ + +E D + + ++SPGGS G AI+ A++ Sbjct: 16 IQIYGQIGGFSWFDEPVSADQVYKELENFGND--IDTINLYINSPGGSVTEGCAIYSALK 73 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 + K K + +S +I+ A + I + + + + Sbjct: 74 RHKAVKN--VYIDGQCSSIASVIAMAGDKIAMSPVATMMIHNPI 115 >gi|319792645|ref|YP_004154285.1| ppic-type peptidyL-prolyl cis-trans isomerase [Variovorax paradoxus EPS] gi|315595108|gb|ADU36174.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus EPS] Length = 638 Score = 36.9 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 35/294 (11%), Positives = 75/294 (25%), Gaps = 26/294 (8%) Query: 2 EFVLK--KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIE----DSQELIE 55 +F K KI ++ L ++ V++ VA I G I D+Q IE Sbjct: 3 DFFRKYNKIVMIFLFLLIIPSFVLFGVERYQGSGRDEKVAHIE-GGDITKPEWDAQHRIE 61 Query: 56 --RIERISRDDSATALIVSLSSPGGSAYAGEAIFRA--IQKVKNRKPVITEVHEMAASAG 111 RI + + + ++ + E + R + + + ++ Sbjct: 62 TDRIRQ--QSPNVDPTVLDSDALR--YATLERMVRDRVLAAAAAKANMTVSEDRLSRIFA 117 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 AS + + V + P + +S + V +P + V Sbjct: 118 QDPGLASFRTPDGKFDRETFLRVTGRTPEQYEAQVRADMSTQQVLLGVSGTALTPPALVA 177 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS---DGRIWTGAEAKKVGLIDVVG 228 + + + + +A L+ + Sbjct: 178 ATVNAFYDRREIQVARFAPDGFASKVTVSDADIEAYYKDHTSQFQAPEQANIEYLVLDL- 236 Query: 229 GQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQT 282 V + +K + F + S +L M Sbjct: 237 -------DAAKKNVVVNEADLKTYYEQNTARFGTKEERRASHILITAPASMSAA 283 >gi|294783245|ref|ZP_06748569.1| ATP-dependent Clp protease [Fusobacterium sp. 1_1_41FAA] gi|294480123|gb|EFG27900.1| ATP-dependent Clp protease [Fusobacterium sp. 1_1_41FAA] Length = 344 Score = 36.9 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 13/104 (12%) Query: 41 IAIRGQI---------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 I I GQI + ++ + +E D + + ++SPGGS G AI+ A++ Sbjct: 16 IQIYGQIGGFSWFDEPVSADQVYKELENFGND--IDTINLYINSPGGSVTEGCAIYSALK 73 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 + K K + +S +I+ A + I + + + + Sbjct: 74 RHKAVKN--VYIDGQCSSIASVIAMAGDKIAMSPVATMMIHNPI 115 >gi|153864291|ref|ZP_01997239.1| nodulation efficiency family protein [Beggiatoa sp. SS] gi|152146213|gb|EDN72760.1| nodulation efficiency family protein [Beggiatoa sp. SS] Length = 199 Score = 36.9 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 3/90 (3%) Query: 40 RIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I+G I + + +E + +++ + +PGG A I +AI Sbjct: 30 VLEIKGAIGPATADYIKRGLEEAREN-RVNVIVLQMDTPGGLDMAMRDIVQAIIASPIPV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETS 127 A++ ++ + A Sbjct: 89 VTYVSPSGARAASAGTYILYASHVAAMAPG 118 >gi|242242808|ref|ZP_04797253.1| glycine dehydrogenase subunit 1 [Staphylococcus epidermidis W23144] gi|242233709|gb|EES36021.1| glycine dehydrogenase subunit 1 [Staphylococcus epidermidis W23144] gi|319400875|gb|EFV89094.1| glycine cleavage system P-family protein [Staphylococcus epidermidis FRI909] Length = 448 Score = 36.9 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Query: 38 VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 + + ++G I D ++L + I DD+ A+ V + GS E I I+ Sbjct: 184 IIEVDLKGTITDLEKLEQLI-----DDNTAAVAVQYPNFYGSIEDLEQINNYIKD 233 >gi|152983495|ref|YP_001345948.1| putative lipoprotein [Pseudomonas aeruginosa PA7] gi|150958653|gb|ABR80678.1| lipoprotein, putative [Pseudomonas aeruginosa PA7] Length = 443 Score = 36.9 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Query: 33 DNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 S V +++ G I + L+ I+R + D A +++ + +PGG + I +AI Sbjct: 22 AASATVRVLSVDGAIGPASADYLVRGIQRAAED-GAQLVVLEMDTPGGLDPSMRRIVKAI 80 Query: 91 QK 92 Sbjct: 81 LA 82 >gi|160331468|ref|XP_001712441.1| clpP2 [Hemiselmis andersenii] gi|159765889|gb|ABW98116.1| clpP2 [Hemiselmis andersenii] Length = 233 Score = 36.9 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 60/186 (32%), Gaps = 31/186 (16%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 I +I + ++I + + +D++ + + ++SPGGS +G A++ I+ +K+ I Sbjct: 73 EIDDEIAN--QIIAVMLYLDSEDNSKPIYLYINSPGGSVISGLAMYDTIRHIKSEVVTIN 130 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + ++ L + +A S + + + I + Sbjct: 131 VGLAASMASFILAAGEKGKRLALPHSRIMIHQPMGGAQGQASDIKVEAQQILRI------ 184 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221 + + + V + + EA + Sbjct: 185 -------------RKSLTEDYAQMTGRPYEKV----------LQDMDRDNFMSAYEAVEY 221 Query: 222 GLIDVV 227 GLID V Sbjct: 222 GLIDRV 227 >gi|256544468|ref|ZP_05471841.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerococcus vaginalis ATCC 51170] gi|256399793|gb|EEU13397.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerococcus vaginalis ATCC 51170] Length = 195 Score = 36.9 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED S +I ++ + D + ++SPGG AG AI+ + +K Sbjct: 33 IIFLTGPVEDGVSDIIIAQLLFLESQDPNKDIQFYINSPGGVVTAGLAIYDTMNYIKPDV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S A + S + Sbjct: 93 STICIGQAASMGAVLLSSGAKGKRFSLPNSNILIHQPSGGAQGQ---------------- 136 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGA 216 +Q+ + + ++++++ +K +D Sbjct: 137 --------------ASDIQIQAEQILKMKKRLNKILADNTGQSIEKIQKDTDRDFAMDAY 182 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 183 EAKEYGLIDKV 193 >gi|192289841|ref|YP_001990446.1| enoyl-CoA hydratase [Rhodopseudomonas palustris TIE-1] gi|192283590|gb|ACE99970.1| Enoyl-CoA hydratase/isomerase [Rhodopseudomonas palustris TIE-1] Length = 282 Score = 36.9 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 71/260 (27%), Gaps = 29/260 (11%) Query: 31 VEDNSPHVARIAIRGQIEDSQ---------ELIERIERISRDDSATALIVSLSSPGGSAY 81 VE P VARI + D++ +L + +DDS +I++ + P SA Sbjct: 9 VERPDPAVARIVMNRP--DARNAQNLQMTYDLNAAFDDAVQDDSVKVIILAGAGPHFSAG 66 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 + + P + + I T ++ Sbjct: 67 H-DLRATTKNEAGIDFPPVGAWGGFREPGAHGRMAREQEIYLQITRRWRNLAKPTIAEVH 125 Query: 142 KPFLD---KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + L + + ++ P + + L Sbjct: 126 GKCIAGGLMLAWACDLIIAADSAEFCDPVVTM--------GVCGVEWFVHPWEL------ 171 Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258 P +L W+ EA ++G+++ V E+ AL + + K Sbjct: 172 GPRKAKELLFTADSWSAQEAHQLGMVNHVVPATELSAFAMALAQRIAAKPSFALKMTKEA 231 Query: 259 WFCDLKNLSISSLLEDTIPL 278 + + ++ L Sbjct: 232 VNRSVDIQGQPAAIDQAFAL 251 >gi|91775762|ref|YP_545518.1| ATP-dependent Clp protease proteolytic subunit ClpP [Methylobacillus flagellatus KT] gi|116243149|sp|Q1H1G0|CLPP_METFK RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|91709749|gb|ABE49677.1| ATP-dependent Clp protease proteolytic subunit ClpP [Methylobacillus flagellatus KT] Length = 213 Score = 36.9 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 24/198 (12%), Positives = 58/198 (29%), Gaps = 34/198 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D+ ++ ++ + ++ + ++SPGGS AG I+ +Q VK Sbjct: 45 IIFLVGPVNDATANLVVAQLLFLEAENPDKDIYFYINSPGGSVTAGMGIYDTMQFVKPDV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A S V L + ++ Sbjct: 105 STLCVGQAASMGALLLAAGAQGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKE------ 158 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + +++ P +K + Sbjct: 159 ------------------------ILFLREKLNHILASHTGQPVEKIALDTDRDNFMSAE 194 Query: 217 EAKKVGLIDV-VGGQEEV 233 ++ G++D + + + Sbjct: 195 QSVAYGIVDKVIASRADA 212 >gi|242241142|ref|YP_002989323.1| multifunctional fatty acid oxidation complex subunit alpha [Dickeya dadantii Ech703] gi|242133199|gb|ACS87501.1| fatty oxidation complex, alpha subunit FadB [Dickeya dadantii Ech703] Length = 730 Score = 36.9 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 1/85 (1%) Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 + +++ G+ AEA KVGL+D + +++ + K+ DW + Sbjct: 163 NALEIITAGKELNAAEALKVGLVDAIVTDDKLISAALQTLRLAIEGKL-DWQARRRPKLQ 221 Query: 262 DLKNLSISSLLEDTIPLMKQTKVQG 286 L+ + + + ++ G Sbjct: 222 PLRIGRVEAAMSFATARALVAQLAG 246 >gi|207728251|ref|YP_002256645.1| membrane-bound serine protease (clpp class) protein [Ralstonia solanacearum MolK2] gi|206591497|emb|CAQ57109.1| membrane-bound serine protease (clpp class) protein [Ralstonia solanacearum MolK2] Length = 467 Score = 36.9 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 23/213 (10%), Positives = 62/213 (29%), Gaps = 4/213 (1%) Query: 19 TLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSP 76 V WS + V + + G I + ++ ++ + + +++ + +P Sbjct: 14 LAASVAAVWSGLALAAAAPVMVLPLTGAIGPASAAYVVHGLDVARK-EGMQLVVLQMDTP 72 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 GG + I +AI A++ ++ I A + Sbjct: 73 GGLDASMRQIIQAILASPVPVAGYVAPGGARAASAGTYILYASHIAAMAPATNLGAASPV 132 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 + + S + + + + D++ + Sbjct: 133 AIGIGGHAPAGPTPANPTPTPGDTAKPASAPAASGNEDTLARKQMHDAAAYIRGLAQLRG 192 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 RN + + + + + EA +ID++ Sbjct: 193 RNADWGE-RAVREAVSLSADEAATQRVIDLIAT 224 >gi|315033068|gb|EFT45000.1| Clp protease [Enterococcus faecalis TX0017] Length = 239 Score = 36.9 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 64/195 (32%), Gaps = 15/195 (7%) Query: 40 RIAIRGQIE----DSQELIER--IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 + + G I ++I+ I D + + L+SPGG + G I+ ++ Sbjct: 21 VLTLSGNIRKKYWSDDDVIDAKSIRETL-DGVTDDITIKLNSPGGDVFEGVEIYNYLKDH 79 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG----VLFQYPYVKPFLDKLG 149 ++ V +AASA I A++ + + V ++ L+ L Sbjct: 80 PSKVTVEV--TGVAASAATFILSAADEAIMNVGTSVMIHEASTFTWGNKQDIQKTLNALE 137 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW-FVRLVSESRNIPYDKTLVLS 208 S+ S + ++ + + + + F V ++ + Sbjct: 138 TIDDSILSIYSQKTGQTTDQLETWMREEKWFTAEEAVEYGFATEVKKNTEKNSTDSKENI 197 Query: 209 DGRIWTG-AEAKKVG 222 + AEA + Sbjct: 198 AEMVKNAVAEAMSLN 212 >gi|22537725|ref|NP_688576.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus agalactiae 2603V/R] gi|25011674|ref|NP_736069.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus agalactiae NEM316] gi|76787269|ref|YP_330203.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus agalactiae A909] gi|76799155|ref|ZP_00781338.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus agalactiae 18RS21] gi|77407096|ref|ZP_00784096.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus agalactiae H36B] gi|77411373|ref|ZP_00787720.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus agalactiae CJB111] gi|60389783|sp|Q8DYA5|CLPP_STRA5 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|60389787|sp|Q8E3X0|CLPP_STRA3 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|109878422|sp|Q3JZV0|CLPP_STRA1 RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|22534615|gb|AAN00449.1|AE014264_4 ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus agalactiae 2603V/R] gi|22091680|emb|CAC88188.1| ClpP serine protease [Streptococcus agalactiae] gi|24413214|emb|CAD47293.1| ATP-dependent CLP protease proteolytic subunit [Streptococcus agalactiae NEM316] gi|76562326|gb|ABA44910.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus agalactiae A909] gi|76585485|gb|EAO62060.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus agalactiae 18RS21] gi|77162546|gb|EAO73510.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus agalactiae CJB111] gi|77174291|gb|EAO77160.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus agalactiae H36B] Length = 196 Score = 36.9 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 47/155 (30%), Gaps = 2/155 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 27 IIMLTGQVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + +K+ Sbjct: 87 QTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKT 146 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + D L Sbjct: 147 RHTLEKILADNSGQSIEKVHDDAERDRWMSAQETL 181 >gi|325106285|ref|YP_004275939.1| Enoyl-CoA hydratase/isomerase [Pedobacter saltans DSM 12145] gi|324975133|gb|ADY54117.1| Enoyl-CoA hydratase/isomerase [Pedobacter saltans DSM 12145] Length = 254 Score = 36.9 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 29/80 (36%) Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 + +G+++T EAK++GLID + + + + W K+ Sbjct: 154 KAYQSILEGKLFTVEEAKQIGLIDASANIDSLMTAAEKKIQEYLQYDYTTWQQSKSNLRK 213 Query: 262 DLKNLSISSLLEDTIPLMKQ 281 L E +++Q Sbjct: 214 SLIKKVSEDQSETLRKVLEQ 233 >gi|148240099|ref|YP_001225486.1| ATP-dependent Clp protease-like protein [Synechococcus sp. WH 7803] gi|147848638|emb|CAK24189.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp. WH 7803] Length = 223 Score = 36.9 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 63/186 (33%), Gaps = 22/186 (11%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 I+ ++ +I ++ + D+ + ++S G S Y G+AI + I + Sbjct: 49 IDVTELIIAQLLYLEFDNPDKPIYFYINSTGTSWYTGDAIGFETEAFA-----ICDTLRY 103 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + I + AA G+ G P+ L + + Sbjct: 104 VKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHASIVLHQPRSGARG------------ 151 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLID 225 +Q+ V + + ++S + ++ SD + T +AK+ GLID Sbjct: 152 ----QATDIQIRAQEVLHNKRAMLEILSTNTGRSVEELSKDSDRMSYLTPEQAKEYGLID 207 Query: 226 VVGGQE 231 V Sbjct: 208 RVLTSR 213 >gi|332703911|ref|ZP_08423999.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio africanus str. Walvis Bay] gi|332554060|gb|EGJ51104.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio africanus str. Walvis Bay] Length = 206 Score = 36.9 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 21/188 (11%), Positives = 55/188 (29%), Gaps = 33/188 (17%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 I I + ++ + +D + + ++SPGGS AG AI+ + Sbjct: 37 PIDDHIAGL--ICAQLLFLESEDPDKEIYMYINSPGGSVTAGMAIYDTM----------G 84 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + ++ + + + + + + + + + Sbjct: 85 YISCPVSTLCIGQAASMGAFLLSSGTKGMRFSLPNSRILIHQPMGGFQGQASDIDIHA-- 142 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220 + R+++E+ + +D + + EA + Sbjct: 143 ------------------REILRMRADLNRILAENTGKDLAQIERDTDRDYFMSAQEALE 184 Query: 221 VGLIDVVG 228 GLID + Sbjct: 185 YGLIDKIM 192 >gi|254446451|ref|ZP_05059927.1| Clp protease [Verrucomicrobiae bacterium DG1235] gi|198260759|gb|EDY85067.1| Clp protease [Verrucomicrobiae bacterium DG1235] Length = 182 Score = 36.9 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 57/196 (29%), Gaps = 35/196 (17%) Query: 35 SPHVARI--AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 + I I +I ++ +I ++ + +D + V ++SPGGS +G AI+ + Sbjct: 9 KDRIVFIGTPINDEIANA--IIAQLLFLQMEDPKKDINVYINSPGGSVTSGMAIYDTMNF 66 Query: 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 + + L A S V Sbjct: 67 LSCEVSTWCIGMAASMGTILLAGGTKGKRYALPNSRVMIHQPSGGAGGQ----------- 115 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 + + + ++++E ++ SD Sbjct: 116 -------------------ASDISIQAKEIIRWRETLNKVLAEKTGQSVERIQKDSDRDY 156 Query: 213 W-TGAEAKKVGLIDVV 227 W T EA + G+ID V Sbjct: 157 WMTSQEALEYGVIDKV 172 >gi|194859392|ref|XP_001969365.1| GG10065 [Drosophila erecta] gi|190661232|gb|EDV58424.1| GG10065 [Drosophila erecta] Length = 280 Score = 36.9 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 16/96 (16%) Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQS--------------LYALGVD 243 L+ GR++T EA + GL+D + +EE + L Sbjct: 174 PKRLAERALTQGRMFTTQEAFEAGLVDEIASTKEEAVEKCAAFIGTFAKVNPLARGLTKL 233 Query: 244 Q-SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPL 278 Q I+++ + D L+ S+ ++ + Sbjct: 234 QFRADNIREFEEIREKDVADFAALASSAEVQKVMGT 269 >gi|221209484|ref|ZP_03582465.1| NfeD family protein [Burkholderia multivorans CGD1] gi|221170172|gb|EEE02638.1| NfeD family protein [Burkholderia multivorans CGD1] Length = 520 Score = 36.9 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 60/191 (31%), Gaps = 3/191 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I + ++ ++R +R+ + A+ + L +PGG + I +AI Sbjct: 58 VIPLNGAIGPACADFVVRSLQRAAREHAPLAI-LQLDTPGGLDTSMRQIIKAILGSPVPV 116 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 A++ ++ I A Q + S + Sbjct: 117 AAFVAPGGARAASAGTYIVYASHIAAMAPGTNLGAASPVQLGVGGGTPAAPPQAPTSRGA 176 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 SP A +P + ++ + + L + + + E Sbjct: 177 SPSSASGTPTALPADTQSTEIRKATQDAAAYLRGLAQLRGRNAEWAERAVREAVSLSANE 236 Query: 218 AKKVGLIDVVG 228 A+ ++D++ Sbjct: 237 ARAQRIVDLIA 247 >gi|189202390|ref|XP_001937531.1| carnitinyl-CoA dehydratase [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187984630|gb|EDU50118.1| carnitinyl-CoA dehydratase [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 281 Score = 36.9 bits (83), Expect = 3.5, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 14/99 (14%) Query: 209 DGRIWTGAEAKKVGLIDVV-----GGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 GR T AK++ L++ + G +E + + I + W Sbjct: 180 TGRPITAQRAKELNLVNRISSTPEGVVDEALKLANEIAAISPDSAIVTRAALREAWETGS 239 Query: 264 KNLSISSLLEDTIPLM--KQTKVQGLWAV-------WNP 293 + +E + + ++GL A W P Sbjct: 240 VERATQLTMEQYNGRLNTSENALEGLNAFAEKRKPNWKP 278 >gi|50914353|ref|YP_060325.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes MGAS10394] gi|50903427|gb|AAT87142.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pyogenes MGAS10394] Length = 221 Score = 36.9 bits (83), Expect = 3.6, Method: Composition-based stats. Identities = 34/253 (13%), Positives = 85/253 (33%), Gaps = 48/253 (18%) Query: 40 RIAIRGQIE--DSQELIE-----------RIERISRDDSATALIVSLSSPGGSAYAGEAI 86 RI ++G + +SQE+ + IE++ D+S +I+ ++S GG G I Sbjct: 4 RINLKGPLIANNSQEVYDYYGMEAASAKSIIEKLPEDNS--DIILEVNSNGGLVTVGSEI 61 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 + A++ K + +A++ ++ ++ +V Sbjct: 62 YTALRNYKGKVTAEITGMAASAASVAVMGVDKVVMSPTAQMMVH---------------- 105 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 KA + + + + + S V+++ + + Sbjct: 106 --------------KASFNWVAGNSDDLDKASNALKSSDKAIVNAYVAKTGLPEDEIMEL 151 Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNL 266 + + + +A + G D V E S+ I D+ ++ ++ N+ Sbjct: 152 MKNETFMSAQDAVEKGFADEVMSF-EAVASI--DNQMLPQAVIDDYYANRSKRKQEISNM 208 Query: 267 SISSLLEDTIPLM 279 + E+ + + Sbjct: 209 LLEIEKEEILQGL 221 >gi|30250389|ref|NP_842459.1| hypothetical protein NE2468 [Nitrosomonas europaea ATCC 19718] gi|30181184|emb|CAD86380.1| Protein of unknown function DUF107 [Nitrosomonas europaea ATCC 19718] Length = 417 Score = 36.9 bits (83), Expect = 3.6, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 58/202 (28%), Gaps = 13/202 (6%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + + R + A +I+ + +PGG + I + I A+ Sbjct: 2 QDYIQRGLSRATE-RRAQVIILQIDTPGGLDVSMRKIIQEIIASPVPVVSFVAPGGARAA 60 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 + + ++ + + P L S + Sbjct: 61 SAGTYIL----YASHIAAMAPATNLGAATPVKMNTLASKPEVPDSQPKGEQPDKSDSQDA 116 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG- 228 + K + + RN + + + +G T AEA +ID+V Sbjct: 117 MTVKVINDAVAYIRGLAQ------MRGRNADWAE-QAVREGVSLTAAEALDKNVIDLVAD 169 Query: 229 GQEEVWQSLYALGVDQSIRKIK 250 ++ + VD S K+K Sbjct: 170 DVSDLLARIDGRTVDLSGEKVK 191 >gi|319791569|ref|YP_004153209.1| 3-hydroxyacyL-CoA dehydrogenase NAD-binding protein [Variovorax paradoxus EPS] gi|315594032|gb|ADU35098.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein [Variovorax paradoxus EPS] Length = 711 Score = 36.9 bits (83), Expect = 3.6, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 3/87 (3%) Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262 ++ GR EA +GL+D +G + + L + + K + Sbjct: 159 ALELMLSGRHAGAKEALSLGLVDRLGTEADARAE--GLAYAEELVAAKA-PVRRTREAAG 215 Query: 263 LKNLSISSLLEDTIPLMKQTKVQGLWA 289 L + S + K +GL++ Sbjct: 216 LADKEASRAALEAARTDTAKKSRGLFS 242 >gi|288932262|ref|YP_003436322.1| enoyl-CoA hydratase/isomerase [Ferroglobus placidus DSM 10642] gi|288894510|gb|ADC66047.1| Enoyl-CoA hydratase/isomerase [Ferroglobus placidus DSM 10642] Length = 246 Score = 36.9 bits (83), Expect = 3.6, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 10/87 (11%) Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 V+ G ++ +A ++G+ID V +EE+ + K+K N P + K Sbjct: 154 DVVYGGDFYSAEKALELGIIDGVFSKEELVEKSIE--------KVKSLNHPAEAFSAVKK 205 Query: 265 NLSISSLLEDTIPLMKQTKVQGLWAVW 291 N ++ +++ + + V+ ++W Sbjct: 206 NRTLK--VKEECLALLEKDVETFTSLW 230 >gi|171690062|ref|XP_001909963.1| hypothetical protein [Podospora anserina S mat+] gi|170944986|emb|CAP71097.1| unnamed protein product [Podospora anserina S mat+] Length = 276 Score = 36.9 bits (83), Expect = 3.6, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 21/43 (48%) Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 ++ + + ++G E K GL+D GG ++ + + + + Sbjct: 176 DLVLEAKRFSGEEGVKAGLVDRTGGLDQALELIKERKLTNKAK 218 >gi|90412623|ref|ZP_01220625.1| hypothetical membrane protein [Photobacterium profundum 3TCK] gi|90326431|gb|EAS42843.1| hypothetical membrane protein [Photobacterium profundum 3TCK] Length = 489 Score = 36.9 bits (83), Expect = 3.6, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 7/82 (8%) Query: 11 RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATA 68 +++ L + +T++ S S+ +D V + I G I S + IE+ D +A+ Sbjct: 2 KFLSLCVFVITLLLHSISALADD----VWVVEINGGIGPATSDFVAREIEQAQID-NASL 56 Query: 69 LIVSLSSPGGSAYAGEAIFRAI 90 +++ +++PGG + I RAI Sbjct: 57 VVLKMNTPGGLDTSMRDIIRAI 78 >gi|319745540|gb|EFV97842.1| ATP-dependent Clp protease, protease subunit [Streptococcus agalactiae ATCC 13813] Length = 200 Score = 36.9 bits (83), Expect = 3.7, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 47/155 (30%), Gaps = 2/155 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 31 IIMLTGQVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 90 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + +K+ Sbjct: 91 QTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKT 150 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 + + D L Sbjct: 151 RHTLEKILADNSGQSIEKVHDDAERDRWMSAQETL 185 >gi|296271423|ref|YP_003654055.1| enoyl-CoA hydratase/isomerase [Thermobispora bispora DSM 43833] gi|296094210|gb|ADG90162.1| Enoyl-CoA hydratase/isomerase [Thermobispora bispora DSM 43833] Length = 225 Score = 36.9 bits (83), Expect = 3.7, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 20/39 (51%) Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 ++ GR + G EA+ +GL+D + + + S AL Sbjct: 150 AAIASMTTGRRFGGPEARDLGLVDDIADLDRLIASADAL 188 >gi|227878727|ref|ZP_03996639.1| S14 family endopeptidase ClpP [Lactobacillus crispatus JV-V01] gi|227861696|gb|EEJ69303.1| S14 family endopeptidase ClpP [Lactobacillus crispatus JV-V01] Length = 230 Score = 36.9 bits (83), Expect = 3.7, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 46/177 (25%), Gaps = 33/177 (18%) Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116 I S ++V ++S GG AG I+ ++K + Sbjct: 34 IRDALNQASGQDIVVEINSRGGYVDAGSEIYTELKK---------YQGNIDIQIVGYACS 84 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 A++ I A ++ S D + S Sbjct: 85 AASWIALAGDTVEMSPTAQLMIHRASGGADGNVDDLASAMQG------------------ 126 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEE 232 +D V L ++ + L W A G +D + ++E Sbjct: 127 -----LDQMDQALVDLYAKRTGKSAQEVYQLMAKESWMNAKTAVANGFVDSIMFEDE 178 >gi|115399750|ref|XP_001215464.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114191130|gb|EAU32830.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 244 Score = 36.9 bits (83), Expect = 3.7, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 20/36 (55%) Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 L +G WTG EA + G++D + +++++ L Sbjct: 164 LLEGHRWTGREALQDGIVDAIAEPDDMFRVALELAN 199 >gi|113868725|ref|YP_727214.1| S49 family serine protease [Ralstonia eutropha H16] gi|113527501|emb|CAJ93846.1| Membrane-bound serine protease, S49 family [Ralstonia eutropha H16] Length = 486 Score = 36.9 bits (83), Expect = 3.8, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 61/196 (31%), Gaps = 20/196 (10%) Query: 39 ARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 I ++G + + ++ +ER A +++ + +PGG + I +AI Sbjct: 47 YVIPLKGAVSPASASFILRSMERARA-GGAQLVVLEMDTPGGLDASMREIIQAILASPIP 105 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLV----GSIGVLFQYPYVKPFLDKLGVSI 152 A++ ++ I A + V P L Sbjct: 106 VASYVYPGGARAASAGTYILYASHIAAMAPGTNLGAATPVQVGIGGPQKPEALPGA---- 161 Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212 K +P SE + + D+S + RN + + + + Sbjct: 162 --------KPASTPASEPARADAMERKQMHDASAYIRGLAQLRGRNAEWAE-RAVRESVS 212 Query: 213 WTGAEAKKVGLIDVVG 228 + EA ++D+V Sbjct: 213 LSADEALAQRVVDLVA 228 >gi|297619933|ref|YP_003708038.1| hypothetical protein Mvol_1409 [Methanococcus voltae A3] gi|297378910|gb|ADI37065.1| protein of unknown function DUF114 [Methanococcus voltae A3] Length = 293 Score = 36.9 bits (83), Expect = 3.8, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 5/106 (4%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+E++ I + ++ +PGG A E I A+ + K + VI + M Sbjct: 68 IEDSEEVLRAIRLTPENMPIDLIL---HTPGGLVLASEQIASALMEHKAKTTVIIPHYAM 124 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 + G LI+ A++ I+ + +++G + L L Sbjct: 125 SG--GSLIALAADEIIMDKNAVMGPVDPQIGQYPAASILSVLDKKY 168 >gi|257870381|ref|ZP_05650034.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257804545|gb|EEV33367.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 238 Score = 36.9 bits (83), Expect = 3.8, Method: Composition-based stats. Identities = 27/204 (13%), Positives = 66/204 (32%), Gaps = 40/204 (19%) Query: 30 HVEDNSPHVARIAIRGQI-----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE 84 + + H+ + + G I D + + ++ R + D +++ L+S GG + G Sbjct: 17 NESKDGKHI--LTLSGVIQKRYWSDDKYIDAKLIRDNLDGVTDDVVIRLNSNGGDVFQGV 74 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I+ ++ + V ++A S I + Sbjct: 75 EIYNYLKNHSSHITV--------------------EVMATAASAATFICAGADEVIMNVG 114 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + ++V N ++ +++ + + ++ D+ Sbjct: 115 TSFMIHEAETVGWG------------NKTDIKKTLQALETIDDSILSIYADKTGQSKDQI 162 Query: 205 LV-LSDGRIWTGAEAKKVGLIDVV 227 +++ R +T EA K G D V Sbjct: 163 TTWINEARWFTADEAVKFGFADSV 186 >gi|88809169|ref|ZP_01124678.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. WH 7805] gi|88787111|gb|EAR18269.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. WH 7805] Length = 223 Score = 36.9 bits (83), Expect = 3.8, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 62/186 (33%), Gaps = 22/186 (11%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 I+ ++ +I ++ + DD + ++S G + Y G+AI + I + Sbjct: 49 IDVTELIIAQLLYLEFDDPDKPIYFYINSTGTTWYTGDAIGFETEAFA-----ICDTLRY 103 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + I + AA G+ G P+ L + + Sbjct: 104 VKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHSSIVLHQPRSGARG------------ 151 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLID 225 +Q+ V + + +++ + ++ SD + T +AK GLID Sbjct: 152 ----QATDIQIRAKEVLHNKRAMLEILAANTGRSVEELSKDSDRMSYLTPDQAKDYGLID 207 Query: 226 VVGGQE 231 V Sbjct: 208 RVLTSR 213 >gi|316936721|gb|ADU60355.1| capsid protein [Wolbachia phage WO] Length = 137 Score = 36.9 bits (83), Expect = 3.9, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLID 225 + ++++ +Q VD Y FV+L++ +R + +K G + G A ++GL D Sbjct: 2 HMEPMTSESLESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYF-GERAIEIGLAD 60 Query: 226 VV 227 + Sbjct: 61 GM 62 >gi|209486280|gb|ACI48592.1| capsid protein [Wolbachia phage WO] Length = 99 Score = 36.9 bits (83), Expect = 3.9, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 V+L++ +R + +K G + G +A ++GL D V E Sbjct: 1 EMLVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFINK 49 >gi|148544339|ref|YP_001271709.1| peptidase S14, ClpP [Lactobacillus reuteri DSM 20016] gi|148531373|gb|ABQ83372.1| peptidase S14, ClpP [Lactobacillus reuteri DSM 20016] Length = 243 Score = 36.9 bits (83), Expect = 4.0, Method: Composition-based stats. Identities = 26/200 (13%), Positives = 56/200 (28%), Gaps = 46/200 (23%) Query: 41 IAIRGQIE--DSQELIERI----------ERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 I ++G I D ++ + + E + + + V ++S GGS +A I+ Sbjct: 4 INVKGVIVSNDDADIYDWLGYDCVSPNQVEDVLNNSD-EDIEVDIASGGGSVFAASEIYT 62 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 ++ ++ + L + A+++I A + S Sbjct: 63 MLKA---------YSGKVVVNIQGLAASAASVIAMAGDEINMSPTSQMMIHKAS------ 107 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 ++ ++ V + D L L Sbjct: 108 -----TISMGNADDFAHDSKMLD------------VMDQSIVNAYEAKTGMDRDDILQLM 150 Query: 209 DGRIW-TGAEAKKVGLIDVV 227 W T +A G D + Sbjct: 151 ANETWMTAQDAVDKGFADNI 170 >gi|256843130|ref|ZP_05548618.1| ATP-dependent Clp protease, proteolytic subunit [Lactobacillus crispatus 125-2-CHN] gi|256614550|gb|EEU19751.1| ATP-dependent Clp protease, proteolytic subunit [Lactobacillus crispatus 125-2-CHN] Length = 239 Score = 36.5 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 83/265 (31%), Gaps = 59/265 (22%) Query: 41 IAIRGQIEDSQE----------------LIERIERISRDDSATALIVSLSSPGGSAYAGE 84 I ++G + D+ + + +++ D+ + + ++S GG +A Sbjct: 7 IDVKGDVVDNDTGQFFDYWGMQCVSPQMVKDSLDKAQGDE----VELDIASYGGDVFAAS 62 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I+ I + + V + MAASA +I+ A + +V + + Sbjct: 63 EIYSMINQYSGK--VTGVIQGMAASAATIIAEACDHLVISPAGQMMIHKASTAGAGNS-- 118 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR-NIPYDK 203 V ++ + + ++R ++ Sbjct: 119 -----------------------------DDFTHTAGVLNTTDRTIAGIYQNRTGKSEEE 149 Query: 204 TLVLSDGRIW-TGAEAKKVGLIDVVGGQEE----VWQSLYALGVDQSIRKIKDWNPPKNY 258 L L + T +A + G D + + + V L+ + +I+K + + Sbjct: 150 VLNLMKQETYLTAKDAVEQGFADEIMKKSDKVPQVVNGLHEIPSKDAIKKFMNLIKNQKS 209 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTK 283 D K +L + + K Sbjct: 210 TVSDSKRSENDALFNAKLAIFKGES 234 >gi|327393420|dbj|BAK10842.1| putative peptidase S14 ClpP [Pantoea ananatis AJ13355] Length = 282 Score = 36.5 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 77/248 (31%), Gaps = 40/248 (16%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL-IERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 + + ++ + G + RI R + + V+++SPGG + G AI+ Sbjct: 35 KAAKPDENSISVFDVIGADYWGDGVTASRIAGALRSMNGADVTVNINSPGGDMFEGLAIY 94 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 +++ K + + A++A + +I + L+ Sbjct: 95 NLLRE-YEGKVTVKVLGLAASAASIIAMAGDDIQIGRGAFLMIHNC-------------- 139 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 +++ P M S + + + Sbjct: 140 -----WVYAMGNRHDLSQIAADMEPFDKAMGDIYSYRS------------GLSAEDIAEM 182 Query: 208 SDGRIWT-GAEAKKVGLIDVVGGQEEVWQS----LYALGVDQSIRKIKDWNPPKNYWFCD 262 DG + G++A G D + +E+ AL ++ + P++ Sbjct: 183 MDGETYIGGSDAVDKGFADRLLSADEISDDDDSPAAALRKLDAL--LAKAETPRSERRKL 240 Query: 263 LKNLSISS 270 LK LS S+ Sbjct: 241 LKALSGST 248 >gi|317970580|ref|ZP_07971970.1| ATP-dependent Clp protease-like protein [Synechococcus sp. CB0205] Length = 225 Score = 36.5 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 63/186 (33%), Gaps = 22/186 (11%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 I+ ++ +I ++ + D+ + ++S G S Y+G+AI + I V Sbjct: 49 IDVTELIIAQLLYLEFDNPEKPIFFYINSTGTSWYSGDAIGFETEAF-AIADTIRYVKPP 107 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + + ++ + + P+ L + + Sbjct: 108 VHTICIGQAMGTAAMILSAGTKGH----RAALPHASIVLHQPRSGARG------------ 151 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLID 225 +Q+ V + + +++ + ++ SD + T +A + GLID Sbjct: 152 ----QASDIQIRAKEVLHNKRTMLEMLAANTGKSTEELSKASDRMTYLTAEQAVEFGLID 207 Query: 226 VVGGQE 231 V + Sbjct: 208 RVLTSQ 213 >gi|150376656|ref|YP_001313252.1| hypothetical protein Smed_4519 [Sinorhizobium medicae WSM419] gi|150031203|gb|ABR63319.1| protein of unknown function DUF107 [Sinorhizobium medicae WSM419] Length = 452 Score = 36.5 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 3/70 (4%) Query: 23 VYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSSPGGSA 80 + S + + G I ++ + + R D +++ + +PGG Sbjct: 14 AFMLPVSPAPAAERKAIVLHVNGAISPATAEYVTRGLRRAR-DRGVALVVLQMDTPGGLD 72 Query: 81 YAGEAIFRAI 90 + I RAI Sbjct: 73 TSMREIIRAI 82 >gi|88763685|gb|ABD49512.1| capsid protein [Wolbachia phage WO] Length = 118 Score = 36.5 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y F++L++ +R +K G + G +A ++G+ D V E + + V + Sbjct: 13 YEMFLQLIARNRGPSIEKIRSTEAGLYF-GEKAVEIGVADGVTTFFEFINNHKSRSVSMT 71 Query: 246 IRKIKDWNPPK 256 ++ + Sbjct: 72 TNELTEEGYEN 82 >gi|88763670|gb|ABD49505.1| capsid protein [Wolbachia phage WO] Length = 117 Score = 36.5 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Y FV+L++ +RN + G + G A +VGL D + E Sbjct: 2 YEMFVQLIARNRNFSIEVIKSTEAGLYF-GENAIEVGLADGITTFCEFINK 51 >gi|88763672|gb|ABD49506.1| capsid protein [Wolbachia phage WO] Length = 117 Score = 36.5 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Y FV+L++ +RN + G + G A +VGL D + E Sbjct: 2 YEMFVQLIARNRNFSIEVIKSTEAGLYF-GENAIEVGLADGITTFCEFINK 51 >gi|159903385|ref|YP_001550729.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT 9211] gi|159888561|gb|ABX08775.1| Clp protease subunit [Prochlorococcus marinus str. MIT 9211] Length = 196 Score = 36.5 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 59/180 (32%), Gaps = 31/180 (17%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + ++ ++ + +D + + ++SPGGS Y G IF I+ VK + + Sbjct: 38 SANRIVAQLLFLEAEDPEKDIFLYINSPGGSVYDGLGIFDTIEHVKPDVHTVCVGLAASM 97 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 A L + A + + S + L Sbjct: 98 GAFLLCAGAKGKRSSLKHSRIMIHQPLGGARGQ--------------------------- 130 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 +++ D + ++E P ++ +D + + EA + G+ID + Sbjct: 131 ---ASDIRIQADEILFLKDRLNNELAERTGQPIERISQDTDRDFYMSPDEALEYGIIDNI 187 >gi|332295626|ref|YP_004437549.1| protein of unknown function DUF114 [Thermodesulfobium narugense DSM 14796] gi|332178729|gb|AEE14418.1| protein of unknown function DUF114 [Thermodesulfobium narugense DSM 14796] Length = 276 Score = 36.5 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 5/105 (4%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 I+DS++++ I +D ++ +PGG A E I +A+ + PV + Sbjct: 67 IDDSEQILRAIRLTEKDMPIDIIL---HTPGGLVLAAEQIAKALIRHPA--PVRVFIPHY 121 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 A S G +++ A++ I E +++G + L + Sbjct: 122 AMSGGTMLALAADEIYLDENAVLGPVDPQLGEYPAVSILQAVREK 166 >gi|298248117|ref|ZP_06971922.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963] gi|297550776|gb|EFH84642.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963] Length = 183 Score = 36.5 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I IEDS +I ++ + +D+ + + L+SPGG+ YAG AI+ AIQ ++ Sbjct: 21 ILCINTAIEDSVANSIITQLFYLQSEDATRDIHLYLNSPGGNIYAGLAIYDAIQSLRPEI 80 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 + L + A TS +G V+ Sbjct: 81 ATYCLGRTSGFATLLLAAGEKGRRYALPTSTIGLTQVVA 119 >gi|311744638|ref|ZP_07718436.1| enoyl-CoA hydratase [Aeromicrobium marinum DSM 15272] gi|311312054|gb|EFQ81973.1| enoyl-CoA hydratase [Aeromicrobium marinum DSM 15272] Length = 255 Score = 36.5 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%) Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 P ++ GR + G +A GL+D +++ + L D + + K+ Sbjct: 183 PRTAVDAMTTGRRYGGPDALAAGLVDATASLDDLPGAAADLVRDLAGKDRPTLKAIKDEM 242 Query: 260 FCD 262 F Sbjct: 243 FAG 245 >gi|212539057|ref|XP_002149684.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224] gi|210069426|gb|EEA23517.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224] Length = 285 Score = 36.5 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%) Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 + +G+ +T EA + ++D VG E + G+ + + W L Sbjct: 176 ILEGKRFTAQEALEGKIVDGVGELPEAIDFVQKRGLLKIGSSPSFVPLKERLWAEVL 232 >gi|153833246|ref|ZP_01985913.1| membrane-bound serine protease [Vibrio harveyi HY01] gi|148870517|gb|EDL69432.1| membrane-bound serine protease [Vibrio harveyi HY01] Length = 455 Score = 36.5 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 65/198 (32%), Gaps = 12/198 (6%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI-QKVKNR 96 + ++G I S L IE ++ +I+ + +PGG + I AI Sbjct: 25 VLPVKGAIGPALSDYLSREIEEAQQN-GVDLVILKMDTPGGLDSSMRDIIHAITTSTVPI 83 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL--FQYPYVKPFLDKLGVSIKS 154 + AASAG I AS++ AE + +G+ + P + + Sbjct: 84 ATWVGPSGSRAASAGTYILLASHVAAMAEATNLGAATPVALGGAPQQPSSDEGKDSTDSQ 143 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 +S+ ++ P K V +E +S Sbjct: 144 PESTEKASDEVPAKTAMEKKVINDARAYIKGLARLHDRNAE------WAEKAVSMAASLD 197 Query: 215 GAEAKKVGLIDVVGGQEE 232 EA ++ +ID + E Sbjct: 198 ATEALELNVIDFIANSPE 215 >gi|118431782|ref|NP_148461.2| hypothetical protein APE_2212.1 [Aeropyrum pernix K1] gi|116063104|dbj|BAA81224.2| conserved hypothetical protein [Aeropyrum pernix K1] Length = 292 Score = 36.5 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 69/183 (37%), Gaps = 16/183 (8%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 I+DS+ +I I + + L +PGG A I RA+++ + RK VI + M Sbjct: 73 IDDSEAVIRAIR---STPPEKPIALILHTPGGLVLAASQIARALKRHRGRKIVIVPHYAM 129 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + G LI+ A++ I +++G + P + V + + + Sbjct: 130 SG--GTLIALAADEIRMDPNAVLGPLDPQLSAGPTGPAVPAPSVVKVARMKGKDAQDTTL 187 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220 + V + V ++R +T VL WT +A++ Sbjct: 188 ILADVAEKAIEEMREVITELLKDKMGVEKAR-----ETAVLLTEGRWTHDYPITFEKARE 242 Query: 221 VGL 223 +GL Sbjct: 243 IGL 245 >gi|317122981|ref|YP_004102984.1| hypothetical protein Tmar_2177 [Thermaerobacter marianensis DSM 12885] gi|315592961|gb|ADU52257.1| protein of unknown function DUF107 [Thermaerobacter marianensis DSM 12885] Length = 470 Score = 36.5 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 82/264 (31%), Gaps = 40/264 (15%) Query: 37 HVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 V I +RG IE ++ + E+ RD A+++ +S+ GG I AI Sbjct: 54 RVLVIPVRGNIEPGLARFVTRGFEQARRDR--AAVLLEISTFGGRVDGATDIRGAINAAV 111 Query: 95 NRKPVITEVHEMAASAGYL-ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 + A + I+ A+ + A + +G+ P + + + + Sbjct: 112 AAGVPVAAWVPDRAISAGALIAIAAPSLYMAPDATLGAAEPR---PADEKTISFVRAEFE 168 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW 213 + + + V+ LV + Sbjct: 169 AAARHRGRDPQVAAAMVDKDVAIP-------------NLVEKG------------QILTL 203 Query: 214 TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD------LKNLS 267 TG +A+++G I+ + + G + D L ++ Sbjct: 204 TGEKAREIGFIEGLASSRQQALEAAGWGELPVEELAPTAAERVARFVTDPVVAPILLSIG 263 Query: 268 ISSLLEDT-IPLMKQTKVQGLWAV 290 ++ L+ + +P + GL ++ Sbjct: 264 MAGLVAEFYVPGFGFPGIVGLLSL 287 >gi|77128443|ref|YP_113048.2| ATP-dependent Clp protease proteolytic subunit [Methylococcus capsulatus str. Bath] gi|83301431|sp|Q60BE8|CLPP2_METCA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2; AltName: Full=Endopeptidase Clp 2 gi|66270664|gb|AAU93284.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylococcus capsulatus str. Bath] Length = 195 Score = 36.5 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 62/197 (31%), Gaps = 33/197 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED +I ++ + ++ + + ++SPGG AG AI+ +Q +K Sbjct: 26 VIFLVGQVEDYMANLVIAQLLFLESENPDKDIHLYINSPGGLVTAGLAIYDTMQFIKPDV 85 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A+ S + L + +D I +V Sbjct: 86 STLCVGQAASMGALLLAGGAAGKRYCLPHSRIMIHQPLGGFQGQASDIDIHAREILAV-- 143 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 ++++ P +K G Sbjct: 144 ----------------------------RDRLNKILAHHTGQPIEKIQIDTDRDNFMGGD 175 Query: 217 EAKKVGLIDVVGGQEEV 233 +A GLID V V Sbjct: 176 DAVSYGLIDKVLTHRTV 192 >gi|298372622|ref|ZP_06982612.1| Clp protease [Bacteroidetes oral taxon 274 str. F0058] gi|298275526|gb|EFI17077.1| Clp protease [Bacteroidetes oral taxon 274 str. F0058] Length = 226 Score = 36.5 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 61/193 (31%), Gaps = 33/193 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + + ++ + D + + ++SPGG AG I+ +Q V ++ Sbjct: 59 IIFLGTPIDDYVANVIQAQLLFLDTSDPGKDISIYINSPGGVVQAGLGIYDTMQYVSSKV 118 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L++ A S V ++ ++ Sbjct: 119 GTICTGMAASMAAVLLVAGEKGRRSALPHSRVMIHQPSGGMQGQSSDMEIAVREVQ---- 174 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 ++SE P+D+ SD W T Sbjct: 175 --------------------------KLRKELYHIISEHSGQPFDRVEKDSDRDYWMTAQ 208 Query: 217 EAKKVGLIDVVGG 229 EA G++D V Sbjct: 209 EALDYGMVDSVLT 221 >gi|239948026|ref|ZP_04699779.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rickettsia endosymbiont of Ixodes scapularis] gi|239922302|gb|EER22326.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rickettsia endosymbiont of Ixodes scapularis] Length = 201 Score = 36.5 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 29/187 (15%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + ++ + + ++SPGG AG AI+ +Q +K + + A S G Sbjct: 44 IVAQLLFLEAENPKKDIYMYINSPGGVITAGLAIYDTMQYIKPKVATLCIGQ--ACSMGS 101 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L+ C + I+ +K + + Sbjct: 102 LLLCGGEKGMR-----YSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSK 156 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 Q ++ + S + EAKK G+ID + + Sbjct: 157 HTRQELKHIEKSMERDN----------------------FMSPEEAKKFGIIDNIISSRD 194 Query: 233 VWQSLYA 239 Sbjct: 195 AMTMSAK 201 >gi|58700085|ref|ZP_00374620.1| Clp protease [Wolbachia endosymbiont of Drosophila ananassae] gi|58533399|gb|EAL57863.1| Clp protease [Wolbachia endosymbiont of Drosophila ananassae] Length = 142 Score = 36.5 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 41/114 (35%), Gaps = 2/114 (1%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G IED+ ++ ++ + ++ + + ++SPGG AG +I+ +Q + Sbjct: 29 IIFVTGPIEDNMASVIVAQLLFLESENPDKDICMYINSPGGVVTAGLSIYDTMQYINPDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + + + L + + S + Y ++ Sbjct: 89 STLCIGQAASMGSLLLAAGTKGKRYSLPHSRIMIHQPSGGYHGQATDIEIHANE 142 >gi|227519561|ref|ZP_03949610.1| Clp protease [Enterococcus faecalis TX0104] gi|312902470|ref|ZP_07761676.1| Clp protease [Enterococcus faecalis TX0635] gi|227073010|gb|EEI10973.1| Clp protease [Enterococcus faecalis TX0104] gi|310634140|gb|EFQ17423.1| Clp protease [Enterococcus faecalis TX0635] gi|315579722|gb|EFU91913.1| Clp protease [Enterococcus faecalis TX0630] Length = 239 Score = 36.5 bits (82), Expect = 4.5, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 64/195 (32%), Gaps = 15/195 (7%) Query: 40 RIAIRGQIE----DSQELIER--IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 + + G I ++I+ I D + + L+SPGG + G I+ ++ Sbjct: 21 VLTLSGNIRKKYWSDDDVIDAKSIRETL-DGVTDDITIKLNSPGGDVFEGVEIYNYLKDH 79 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG----VLFQYPYVKPFLDKLG 149 ++ V +AASA I A++ + + V ++ L+ L Sbjct: 80 PSKVTVEV--TGVAASAATFILSAADEAIMNVGTSVMIHEASTFTWGNKQDIQKTLNALE 137 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW-FVRLVSESRNIPYDKTLVLS 208 S+ S + ++ + + + + F V ++ + Sbjct: 138 TIDDSILSIYSQKTGQTTDQLETWMREEKWFTAEEAVEYGFATEVKKNTEKNSTDSKENI 197 Query: 209 DGRIWTG-AEAKKVG 222 + AEA + Sbjct: 198 AEMVKNAVAEAMSLN 212 >gi|194398443|ref|YP_002037392.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae G54] gi|194358110|gb|ACF56558.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus pneumoniae G54] Length = 147 Score = 36.5 bits (82), Expect = 4.5, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 2/120 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + DS + + +++PGGS AG AI + +K Sbjct: 27 IIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVXTMNFIKADV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S A + + D + +K+ Sbjct: 87 QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKN 146 >gi|172039858|ref|YP_001799572.1| enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase [Corynebacterium urealyticum DSM 7109] gi|171851162|emb|CAQ04138.1| enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase [Corynebacterium urealyticum DSM 7109] Length = 756 Score = 36.5 bits (82), Expect = 4.5, Method: Composition-based stats. Identities = 30/246 (12%), Positives = 67/246 (27%), Gaps = 27/246 (10%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 D + +++ +++ +S + +AG I I+ A Sbjct: 37 DLTATVAKVKEAVEAGEVKGVVI--ASAKKTFFAGGDIKSMIKATPAD-----------A 83 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 + + A +L + + L+ + V S + Sbjct: 84 AELTQQIDQMKADLRALETLGVPVAAAINGTALGGGLELALATHHRVASDAKGLKVGL-- 141 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 + V V+ + VL+ GR + +A K GLID V Sbjct: 142 --------PEVTLGLLPGGGGVTRVTRMLGLQDALMKVLTTGRQFGAQDALKTGLIDEVV 193 Query: 229 GQEEVWQSLYALGVDQSIRK----IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKV 284 +++ + + K + + P + S + +K + Sbjct: 194 PADQLLDAAKKWVKENPDAKQPWDTEGYKVPGGTPTNPKLAAFLPSFPANVTKQIKGAPM 253 Query: 285 QGLWAV 290 A+ Sbjct: 254 PAPKAI 259 >gi|330975104|gb|EGH75170.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 150 Score = 36.5 bits (82), Expect = 4.5, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 2/99 (2%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 45 VIFMVGPVEDYMANLIAAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDV 104 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 I + A L A S + L Sbjct: 105 STICIGQACSMGAFLLAGGAEGKRHCLPNSRMMIHQPLG 143 >gi|296108928|ref|YP_003615877.1| protein of unknown function DUF114 [Methanocaldococcus infernus ME] gi|295433742|gb|ADG12913.1| protein of unknown function DUF114 [Methanocaldococcus infernus ME] Length = 272 Score = 36.5 bits (82), Expect = 4.5, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 59/150 (39%), Gaps = 5/150 (3%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 IEDS+E++ I + +I +PGG A A E I A+++ K VI + Sbjct: 66 TIEDSEEILRAIRLTPDNMPIDLII---HTPGGIALAAEQIALALKEHKAETRVIIPHYA 122 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 M+ G LI+ A++ I+ + +++G + ++ + V + Sbjct: 123 MSG--GTLIALAADKIIMDKNAVLGPVDPQLGQYPAASIIETYYKKGEKVSDEFLVLYDV 180 Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 + + + + D + +++ Sbjct: 181 AKKAIKQMEDFVYELLKDKYGEEKAKELAK 210 >gi|256849988|ref|ZP_05555419.1| Clp protease [Lactobacillus crispatus MV-1A-US] gi|262046764|ref|ZP_06019724.1| Clp protease [Lactobacillus crispatus MV-3A-US] gi|256713477|gb|EEU28467.1| Clp protease [Lactobacillus crispatus MV-1A-US] gi|260572746|gb|EEX29306.1| Clp protease [Lactobacillus crispatus MV-3A-US] Length = 231 Score = 36.5 bits (82), Expect = 4.5, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 46/177 (25%), Gaps = 33/177 (18%) Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISC 116 I S ++V ++S GG AG I+ ++K + Sbjct: 35 IRDALNQASGQDIVVEINSRGGYVDAGSEIYTELKK---------YQGNIDIQIVGYACS 85 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 A++ I A ++ S D + S Sbjct: 86 AASWIALAGDTVEMSPTAQLMIHRASGGADGNVDDLASAMQG------------------ 127 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQEE 232 +D V L ++ + L W A G +D + ++E Sbjct: 128 -----LDQMDQALVDLYAKRTGKSAQEVYQLMAKESWMNAKTAVANGFVDSIMFEDE 179 >gi|212539061|ref|XP_002149686.1| enoyl-CoA hydratase/isomerase family protein [Penicillium marneffei ATCC 18224] gi|210069428|gb|EEA23519.1| enoyl-CoA hydratase/isomerase family protein [Penicillium marneffei ATCC 18224] Length = 272 Score = 36.5 bits (82), Expect = 4.5, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%) Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 + +G+ +T EA + ++D VG E + G+ + + W L Sbjct: 176 ILEGKRFTAQEALEGKIVDGVGELPEAIDFVQKRGLLKIGSSPSFVPLKERLWAEVL 232 >gi|83590616|ref|YP_430625.1| hypothetical protein Moth_1781 [Moorella thermoacetica ATCC 39073] gi|83573530|gb|ABC20082.1| Protein of unknown function DUF114 [Moorella thermoacetica ATCC 39073] Length = 276 Score = 36.5 bits (82), Expect = 4.5, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 5/105 (4%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS++++ I D + L +PGG A E I AI K + V V Sbjct: 67 IEDSEQILRAIRLTPDDMPID---LVLHTPGGLVLAAEQIAHAILKHPAK--VTVYVPHY 121 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 A S G LI+ A++ IV E +++G + + + Sbjct: 122 AMSGGTLIALAADEIVMDENAVLGPVDPQLGEYPAASIIKVIEEK 166 >gi|239618479|ref|YP_002941801.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kosmotoga olearia TBF 19.5.1] gi|239507310|gb|ACR80797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kosmotoga olearia TBF 19.5.1] Length = 206 Score = 36.5 bits (82), Expect = 4.6, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 33/187 (17%) Query: 42 AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT 101 + +I + ++ ++ + D + + ++SPGGS +G AI+ +Q +K I Sbjct: 40 PLDDEISNI--VVAQLLFLESQDPDKDISIYINSPGGSVTSGLAIYDTMQYIKPDVSTIC 97 Query: 102 EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + +A L + A S + Sbjct: 98 IGMAASMAAVILAGGSKGKRFALPHSRIMIHQPWG------------------------- 132 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKK 220 +E K +++ + ++S N P +K +D + + AEA K Sbjct: 133 -----GAEGTAKDIEIRTRELLFIRDQINEILSHHTNQPKEKIEEDTDRDFYMSPAEAVK 187 Query: 221 VGLIDVV 227 GL+D V Sbjct: 188 YGLVDKV 194 >gi|156977386|ref|YP_001448292.1| serine protease [Vibrio harveyi ATCC BAA-1116] gi|156528980|gb|ABU74065.1| hypothetical protein VIBHAR_06173 [Vibrio harveyi ATCC BAA-1116] Length = 455 Score = 36.5 bits (82), Expect = 4.6, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 65/198 (32%), Gaps = 12/198 (6%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI-QKVKNR 96 + ++G I S L IE ++ +I+ + +PGG + I AI Sbjct: 25 VLPVKGAIGPALSDYLSREIEEAQQN-GVELVILKMDTPGGLDSSMRDIIHAITTSTVPI 83 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL--FQYPYVKPFLDKLGVSIKS 154 + AASAG I AS++ AE + +G+ + P + + Sbjct: 84 ATWVGPSGSRAASAGTYILLASHVAAMAEATNLGAATPVALGGAPQQPSSDEGKDSTDSQ 143 Query: 155 VKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 +S+ ++ P K V +E +S Sbjct: 144 PESTEKASDEVPAKTAMEKKVINDARAYIKGLARLHDRNAE------WAEKAVSMAASLD 197 Query: 215 GAEAKKVGLIDVVGGQEE 232 EA ++ +ID + E Sbjct: 198 ATEALELNVIDFIANSPE 215 >gi|187924712|ref|YP_001896354.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Burkholderia phytofirmans PsJN] gi|187715906|gb|ACD17130.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Burkholderia phytofirmans PsJN] Length = 706 Score = 36.5 bits (82), Expect = 4.6, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 16/35 (45%) Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 ++ GR + EA GLID +G +++ Sbjct: 153 AALDLILSGRHASAKEALAFGLIDRLGSSDDILAE 187 >gi|15643678|ref|NP_228724.1| hypothetical protein TM0916 [Thermotoga maritima MSB8] gi|4981452|gb|AAD35997.1|AE001755_20 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 284 Score = 36.5 bits (82), Expect = 4.6, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 4/109 (3%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+E++ I+ D ++ +PGG A E I RA++ K + H Sbjct: 72 IEDSEEILRAIKLTPSDMPIDLIL---HTPGGLVLAAEQIARALKMH-KGKVTVFVPHYA 127 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 + + A II+ L + P + V Sbjct: 128 MSGGTLIALAADEIIMDENAVLGPLDPQIGNMPAPSILAAVKKKDVNEV 176 >gi|67921361|ref|ZP_00514879.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501] gi|67856473|gb|EAM51714.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501] Length = 226 Score = 36.5 bits (82), Expect = 4.6, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 72/212 (33%), Gaps = 33/212 (15%) Query: 17 LVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSP 76 ++ L + FS + I+ +Q +I ++ + D+ + ++S Sbjct: 32 IIYLGLPLFSSDEIKQQVG-----------IDVTQLIIAQLLYLQFDNPEKPIYFYINST 80 Query: 77 GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLF 136 G S Y G+AI + I + + I + AA G+ G Sbjct: 81 GTSWYTGDAIGFETEAFA-----ICDTMNYIKPPIHTICIGQAMGTAAMILSAGTKGCRA 135 Query: 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 P+ L++ + +Q+ V + + +++E+ Sbjct: 136 SLPHATIVLNQNRSGAQG----------------QATDIQIRAKEVLQNKQTMLTILAEN 179 Query: 197 RNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 +K D + T A+AK+ GLID V Sbjct: 180 TGQTAEKIAKDIDRTFYLTPAKAKEYGLIDRV 211 >gi|110635697|ref|YP_675905.1| hypothetical protein Meso_3369 [Mesorhizobium sp. BNC1] gi|110286681|gb|ABG64740.1| protein of unknown function DUF107 [Chelativorans sp. BNC1] Length = 488 Score = 36.5 bits (82), Expect = 4.7, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 34/86 (39%), Gaps = 3/86 (3%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSA 66 ++ + L+ + + S ++ + + G + + + +E + + A Sbjct: 17 TASVLITFFLVLSGGFVASSPKAQETGGTAIVLRLEGAVSPATADYVTNGLEIAAERE-A 75 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQK 92 +++ + +PGG + I RAI Sbjct: 76 RLVVLLIDTPGGLDTSMREIIRAILA 101 >gi|326941533|gb|AEA17429.1| ATP-dependent Clp protease proteolytic subunit [Bacillus thuringiensis serovar chinensis CT-43] Length = 258 Score = 36.5 bits (82), Expect = 4.7, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 64/227 (28%), Gaps = 53/227 (23%) Query: 41 IAIRGQIEDSQE----------------LIERIERISRDDSATALIVSLSSPGGSAYAGE 84 I ++G I + E + ++++ + +D LIVS++SPGG G Sbjct: 5 IDVKGPIISNDEAWIYDWFEMDATSPGKITKQLDNANSED----LIVSINSPGGYVDEGS 60 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I+ A++ V IV S I + + P Sbjct: 61 EIYTALKNYPGHVEV--------------------QIVGLAASAASVIAMAGDKVRISPT 100 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + + + + ++ V S ++ Sbjct: 101 AKIMIHNAAKWHGGDHRDMEKAAEMLKITDRAIVNAYVIKS------------GKSEEEL 148 Query: 205 LVLSDGRIWTG-AEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250 L + W G +A + D + E + ++ + + Sbjct: 149 LNMMAEETWMGPQQALENNFADEIMFMENPVKMTASMATAAMLPQKV 195 >gi|148269156|ref|YP_001243616.1| hypothetical protein Tpet_0011 [Thermotoga petrophila RKU-1] gi|281411454|ref|YP_003345533.1| protein of unknown function DUF114 [Thermotoga naphthophila RKU-10] gi|147734700|gb|ABQ46040.1| protein of unknown function DUF114 [Thermotoga petrophila RKU-1] gi|281372557|gb|ADA66119.1| protein of unknown function DUF114 [Thermotoga naphthophila RKU-10] Length = 284 Score = 36.5 bits (82), Expect = 4.7, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 4/109 (3%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+E++ I+ D ++ +PGG A E I RA++ K + H Sbjct: 72 IEDSEEILRAIKLTPSDMPIDLIL---HTPGGLVLAAEQIARALKMH-KGKVTVFVPHYA 127 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 + + A II+ L + P + V Sbjct: 128 MSGGTLIALAADEIIMDENAVLGPLDPQIGNMPAPSILAAVKKKDVNEV 176 >gi|195473423|ref|XP_002088993.1| GE18879 [Drosophila yakuba] gi|194175094|gb|EDW88705.1| GE18879 [Drosophila yakuba] Length = 280 Score = 36.5 bits (82), Expect = 4.8, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQS 236 L+ GR++T EA + GL+D + EE + Sbjct: 178 AERALTQGRMFTTQEAFEAGLVDEIASSKEEAVEK 212 >gi|184153715|ref|YP_001842056.1| phage Clp-protease [Lactobacillus reuteri JCM 1112] gi|227365058|ref|ZP_03849093.1| S14 family endopeptidase ClpP [Lactobacillus reuteri MM2-3] gi|325681598|ref|ZP_08161119.1| ATP-dependent Clp protease, protease subunit [Lactobacillus reuteri MM4-1A] gi|183225059|dbj|BAG25576.1| phage clp-protease [Lactobacillus reuteri JCM 1112] gi|227069908|gb|EEI08296.1| S14 family endopeptidase ClpP [Lactobacillus reuteri MM2-3] gi|324979063|gb|EGC16009.1| ATP-dependent Clp protease, protease subunit [Lactobacillus reuteri MM4-1A] Length = 244 Score = 36.5 bits (82), Expect = 4.8, Method: Composition-based stats. Identities = 26/200 (13%), Positives = 56/200 (28%), Gaps = 46/200 (23%) Query: 41 IAIRGQIE--DSQELIERI----------ERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 I ++G I D ++ + + E + + + V ++S GGS +A I+ Sbjct: 5 INVKGVIVSNDDADIYDWLGYDCVSPNQVEDVLNNSD-EDIEVDIASGGGSVFAASEIYT 63 Query: 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 ++ ++ + L + A+++I A + S Sbjct: 64 MLKA---------YSGKVVVNIQGLAASAASVIAMAGDEINMSPTSQMMIHKAS------ 108 Query: 149 GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS 208 ++ ++ V + D L L Sbjct: 109 -----TISMGNADDFAHDSKMLD------------VMDQSIVNAYEAKTGMDRDDILQLM 151 Query: 209 DGRIW-TGAEAKKVGLIDVV 227 W T +A G D + Sbjct: 152 ANETWMTAQDAVDKGFADNI 171 >gi|89901371|ref|YP_523842.1| 3-hydroxyacyl-CoA dehydrogenase [Rhodoferax ferrireducens T118] gi|89346108|gb|ABD70311.1| 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase [Rhodoferax ferrireducens T118] Length = 706 Score = 36.5 bits (82), Expect = 4.8, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 7/91 (7%) Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS--LYALGVDQSIRKIKDWNPPKNY 258 ++ GR EA +GL+D +G ++ Y + + ++ + Sbjct: 152 KAALDLMLSGRHMGAEEAHALGLVDRLGHSNDILADGLAYTQELLATHAPVRRTRDAQAL 211 Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 SI + + K +GL++ Sbjct: 212 SDRQANRASI-----EAVRAETGKKSRGLFS 237 >gi|312898086|ref|ZP_07757484.1| Clp protease [Megasphaera micronuciformis F0359] gi|310620819|gb|EFQ04381.1| Clp protease [Megasphaera micronuciformis F0359] Length = 159 Score = 36.5 bits (82), Expect = 4.8, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 26/136 (19%) Query: 30 HVEDNSPHVARIAIRGQIEDSQ--------------------ELIERIERISRDDSATAL 69 V++ +P A + I G I D ++ E++E + L Sbjct: 12 TVKNETPQSAEVYIHGDIVDDDMKAWLSDCDGKTFAGYVLPVDVREKLESLQG----KDL 67 Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 + ++S GGS AG AI I++ + V AAS +I A + + + + + Sbjct: 68 TIYINSDGGSVPAGMAIANMIKRH--DGHTVGVVDGWAASIASVIFMACDDLYMPKNTFL 125 Query: 130 GSIGVLFQYPYVKPFL 145 + Sbjct: 126 MIHKPSAMAMGDSDDM 141 >gi|187251176|ref|YP_001875658.1| endopeptidase Clp [Elusimicrobium minutum Pei191] gi|259585952|sp|B2KCS5|CLPP_ELUMP RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|186971336|gb|ACC98321.1| Endopeptidase Clp [Elusimicrobium minutum Pei191] Length = 195 Score = 36.5 bits (82), Expect = 4.9, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 62/184 (33%), Gaps = 28/184 (15%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 + +I ++ + +DS + + ++SPGG AG AI+ +Q +K I M+ Sbjct: 37 ASATMIIAQLLYLDAEDSEREINLYINSPGGLVTAGLAIYDTMQFIKAPITTICMGQAMS 96 Query: 108 ASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 A L + + A + + L + + + + Sbjct: 97 FGAVLLAAGSKGKRYALPHARIMIHQPL-------------------IWGGGISGQVTDI 137 Query: 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDV 226 + + + + +++ +K S+ + + EAK GLID Sbjct: 138 EIESNELR--------KNKEHLLDILAHHTGQDKEKIRQDSERNYYMSAQEAKAYGLIDE 189 Query: 227 VGGQ 230 V Sbjct: 190 VLDL 193 >gi|322832526|ref|YP_004212553.1| peptidase S14 ClpP [Rahnella sp. Y9602] gi|321167727|gb|ADW73426.1| peptidase S14 ClpP [Rahnella sp. Y9602] Length = 282 Score = 36.5 bits (82), Expect = 4.9, Method: Composition-based stats. Identities = 35/246 (14%), Positives = 75/246 (30%), Gaps = 36/246 (14%) Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL-IERIERISRDDSATALIVSLSSPGGSAYAGEAIF 87 N ++ + G + + RI R + + VS++SPGG + G AI+ Sbjct: 35 KAANSNDNTISIFDVIGADYWGEGVTANRIAGALRSMNGEDVTVSINSPGGDMFEGLAIY 94 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 +++ + K + + A++A + + + L+ Sbjct: 95 NQLRE-YSGKVTVKVLGIAASAASIIAMAGDEVQIGRGAFLMIHNC-------------- 139 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 ++ P M S + + Sbjct: 140 -----WVYAVGNRHDLARAAQDMEPFDRAMQDIY------------SARSGLDASDVSEM 182 Query: 208 SDGRIWT-GAEAKKVGLIDVVGGQEEVW--QSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 D + G +A + G D + +E+ A + + + N P++ LK Sbjct: 183 MDNETYIGGNDAVEKGFADRLLSADEISDGDESPAAALRKLDALLAKANTPRSERRKLLK 242 Query: 265 NLSISS 270 +LS S+ Sbjct: 243 SLSAST 248 >gi|119481837|ref|XP_001260947.1| enoyl-CoA hydratase/isomerase family protein [Neosartorya fischeri NRRL 181] gi|119409101|gb|EAW19050.1| enoyl-CoA hydratase/isomerase family protein [Neosartorya fischeri NRRL 181] Length = 271 Score = 36.5 bits (82), Expect = 4.9, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 7/92 (7%) Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG-------VDQSIRKIKDWNPPKN 257 ++ + R + G ++ VGL+D VGG EE Q + G K + + + Sbjct: 171 DLILEARRFAGPQSVAVGLVDGVGGLEETLQLIRERGLQTKAATGIYGTMKEEMYRHTLD 230 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 NL+ +E+ + ++ + A Sbjct: 231 ILDNHAGNLAWREQVEEKKGTYEDAALRAVKA 262 >gi|53802553|ref|YP_112777.1| ATP-dependent Clp protease proteolytic subunit [Methylococcus capsulatus str. Bath] gi|67460462|sp|Q60C68|CLPP1_METCA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; AltName: Full=Endopeptidase Clp 1 gi|53756314|gb|AAU90605.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylococcus capsulatus str. Bath] Length = 206 Score = 36.5 bits (82), Expect = 4.9, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + GQ+ED +I ++ + ++ + + ++SPGG AG AI+ +Q +K Sbjct: 37 VIFLVGQVEDYMANLVIAQLLFLESENPDKDIHLYINSPGGLVTAGLAIYDTMQFIKPDV 96 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L A+ S + L + +D I +V Sbjct: 97 STLCVGQAASMGALLLAGGAAGKRYCLPHSRIMIHQPLGGFQGQASDIDIHAREILAV-- 154 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 ++++ P +K G Sbjct: 155 ----------------------------RDRLNKILAHHTGQPIEKIQIDTDRDNFMGGN 186 Query: 217 EAKKVGLIDVV 227 +A + GLID V Sbjct: 187 DAVEYGLIDKV 197 >gi|257090835|ref|ZP_05585196.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|256999647|gb|EEU86167.1| conserved hypothetical protein [Enterococcus faecalis CH188] Length = 243 Score = 36.5 bits (82), Expect = 5.1, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 64/195 (32%), Gaps = 15/195 (7%) Query: 40 RIAIRGQIE----DSQELIER--IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 + + G I ++I+ I D + + L+SPGG + G I+ ++ Sbjct: 25 VLTLSGNIRKKYWSDDDVIDAKSIRETL-DGVTDDITIKLNSPGGDVFEGVEIYNYLKDH 83 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIG----VLFQYPYVKPFLDKLG 149 ++ V +AASA I A++ + + V ++ L+ L Sbjct: 84 PSKVTVEV--TGVAASAATFILSAADEAIMNVGTSVMIHEASTFTWGNKQDIQKTLNALE 141 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW-FVRLVSESRNIPYDKTLVLS 208 S+ S + ++ + + + + F V ++ + Sbjct: 142 TIDDSILSIYSQKTGQTTDQLETWMREEKWFTAEEAVEYGFATEVKKNTEKNSTDSKENI 201 Query: 209 DGRIWTG-AEAKKVG 222 + AEA + Sbjct: 202 AEMVKNAVAEAMSLN 216 >gi|302024225|ref|ZP_07249436.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis 05HAS68] Length = 168 Score = 36.5 bits (82), Expect = 5.1, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 2/115 (1%) Query: 43 IRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI 100 + G +ED + +I ++ + D + + +++PGGS AG AI + +K I Sbjct: 2 LTGPVEDNMANSIIAQLLYLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTI 61 Query: 101 TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 + S A + + D + + Sbjct: 62 VMGTAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLL 116 >gi|300708413|ref|XP_002996386.1| hypothetical protein NCER_100532 [Nosema ceranae BRL01] gi|239605684|gb|EEQ82715.1| hypothetical protein NCER_100532 [Nosema ceranae BRL01] Length = 573 Score = 36.5 bits (82), Expect = 5.1, Method: Composition-based stats. Identities = 19/187 (10%), Positives = 54/187 (28%), Gaps = 16/187 (8%) Query: 44 RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 G++ ++ E I I D +I ++ G+ + + IQ+ Sbjct: 182 DGEVYSTE---EDINHIFEDGKTIDIITEQNTNQGNVSVSQEVKNEIQEEPALLVKENVS 238 Query: 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 + + ++ + +V S ++ + L ++V +P + Sbjct: 239 NIIHSTLYTTM-------------IVNSTATVYTTVFHTITSSILSNQTETVYVTPNLTD 285 Query: 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL 223 + V V + + + ++ ++ ++ + L Sbjct: 286 KLLQNTVIMPKSDENIASVATIPENQYYRSRKRISQKKKNEDSITQHELFPQNDSDEHQL 345 Query: 224 IDVVGGQ 230 D V Sbjct: 346 TDSVTSF 352 >gi|228985478|ref|ZP_04145635.1| hypothetical protein bthur0001_21730 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774243|gb|EEM22652.1| hypothetical protein bthur0001_21730 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 344 Score = 36.5 bits (82), Expect = 5.1, Method: Composition-based stats. Identities = 35/269 (13%), Positives = 72/269 (26%), Gaps = 41/269 (15%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVA---RIAIRGQIEDSQELIERI 57 M+ + K I V+ +L + + F + ++ +I I G S E++ I Sbjct: 1 MKKIKKLITFIGVITTLTLIVALVFPTWTSQIKGKNSISTLEQIEING---SSHEIM--I 55 Query: 58 ERISRDDSATALIVSLSSPGGSAYAGEA-IFRAIQKVKNRKPVITEVHEMAASAGYLISC 116 +D + +I G + E + QK+ K + + + Y Sbjct: 56 R--GKDKNNPVIIF----VHGGPGSSEIPYAQKYQKLLEEKFTVVNYDQRGSGKSYHFF- 108 Query: 117 ASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 + TS + VL Y+ + K V + + Sbjct: 109 ---EDYSNLTSDLLVEDVLAMTEYISKRMGKEKVILIGHSYGTYIGMQAANKAPEKYEAY 165 Query: 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 + D D + +A+ G D V Sbjct: 166 VGI------------------GQMSDTVESEMDSLNYVIEQAQNAGNTDEVSY----LNG 203 Query: 237 LYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L + +++ ++N Sbjct: 204 LTEKIKNGDTYTPRNYVAKYGGTSRLIEN 232 >gi|47027430|gb|AAT08792.1| capsid protein [Wolbachia phage WO] Length = 88 Score = 36.5 bits (82), Expect = 5.1, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 V+L++ +R + +K G + G +A ++GL D V E Sbjct: 1 EMLVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFEFIN 48 >gi|253581496|ref|ZP_04858721.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium varium ATCC 27725] gi|251836566|gb|EES65101.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium varium ATCC 27725] Length = 191 Score = 36.5 bits (82), Expect = 5.2, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + +I+D + ++ ++ + +D +I+ ++SPGG AG AI+ + +K Sbjct: 28 IIFLGTEIDDNVANAIVAQLLFLEAEDPDKDIIMYINSPGGVVTAGMAIYDTMNYIKPDV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + A L + A A E S + L ++ Sbjct: 88 QTVCIGQAASMGALLLGAGARGKRYALEHSRIMIHQPLGGARGQATDIE----------- 136 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGA 216 + + +++++ + + + Sbjct: 137 -------------------IQAKEILRMKEMLSQILADCTGKSLSEIITDTERDNYMSAE 177 Query: 217 EAKKVGLIDVV 227 EAK GLID V Sbjct: 178 EAKNYGLIDQV 188 >gi|87302740|ref|ZP_01085551.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. WH 5701] gi|87282623|gb|EAQ74581.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. WH 5701] Length = 196 Score = 36.5 bits (82), Expect = 5.2, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 31/180 (17%) Query: 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAA 108 + ++ ++ + +D + + ++SPGGS Y G IF +Q +K + + Sbjct: 38 SANRVVAQLLFLEAEDPEKDIFLYINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASM 97 Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 A L + A + S + L + + + + K Sbjct: 98 GAFLLTAGAKGKRSSLHHSRIMIHQPLG---GARGQASDIRIQADEILYLKDK------- 147 Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 R +S+ P D+ + +D + + AEA GLID V Sbjct: 148 --------------------LNRELSDRTGQPLDRIQIDTDRDFFMSPAEAVSYGLIDKV 187 >gi|313891822|ref|ZP_07825427.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP-like protein [Dialister microaerophilus UPII 345-E] gi|313119816|gb|EFR43003.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP-like protein [Dialister microaerophilus UPII 345-E] Length = 249 Score = 36.1 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 52/159 (32%), Gaps = 13/159 (8%) Query: 39 ARIAIRGQIEDS--QELIERIE-----RISRD--DSA--TALIVSLSSPGGSAYAGEAIF 87 A I I G I D I+ ++ + +D DS + V ++S GGS AG AI Sbjct: 11 AEIYIHGDIIDDFASNFIDGLDGFVFPKAIKDELDSIGEKPITVYINSDGGSVPAGVAIA 70 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 +++ K + + S I + + + + L K Sbjct: 71 NMLKRHKAKTTAVI--DGWCCSIATQIFFSCQERQIPKNAYLMIHKPSCTTVGDANELRK 128 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 ++ +++ + + E +S + Sbjct: 129 TAEALDTIQKGLEEVYRAAAKEHITDEDITKYVNQESWF 167 >gi|302524885|ref|ZP_07277227.1| cyclohexa-1,5-dienecarbonyl-CoA hydratase [Streptomyces sp. AA4] gi|302433780|gb|EFL05596.1| cyclohexa-1,5-dienecarbonyl-CoA hydratase [Streptomyces sp. AA4] Length = 259 Score = 36.1 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 9/87 (10%) Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLK 264 ++ GR EA K+G++D V ++V+ + + + Sbjct: 157 DLIFTGRFVKAEEALKLGIVDEVVAPDDVYAAAHKWASQFANGPAVALR---------AA 207 Query: 265 NLSISSLLEDTIPLMKQTKVQGLWAVW 291 +I S L+ + + + Q A+W Sbjct: 208 KTAIDSGLDVDLATGLKIETQLFTALW 234 >gi|87125531|ref|ZP_01081376.1| ATP-dependent Clp protease proteolytic subunit 4 [Synechococcus sp. RS9917] gi|86166831|gb|EAQ68093.1| ATP-dependent Clp protease proteolytic subunit 4 [Synechococcus sp. RS9917] Length = 211 Score = 36.1 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 22/180 (12%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 +I ++ + D+ + ++S G S Y G+AI + I + + Sbjct: 42 IIAQLLYLEFDNPDKPIYFYINSTGTSWYTGDAIGFETEAFA-----ICDTLRYVKPPVH 96 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 I + AA G+ G P+ L + + Sbjct: 97 TICIGQAMGTAAVILSAGTKGQRAALPHASIVLHQPRSGARG----------------QA 140 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVVGGQE 231 +Q+ V + + ++SE+ ++ SD + T +A + GLID V G Sbjct: 141 TDIQIRAKEVLHNKRAMLEILSENTGRSVEQLAKDSDRMSYLTPEQAVEYGLIDRVLGSR 200 >gi|241116836|ref|XP_002401631.1| ATP-dependent Clp protease, proteolytic subunit, putative [Ixodes scapularis] gi|215493175|gb|EEC02816.1| ATP-dependent Clp protease, proteolytic subunit, putative [Ixodes scapularis] Length = 205 Score = 36.1 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 29/187 (15%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 ++ ++ + ++ + + ++SPGG AG AI+ +Q +K + + A S G Sbjct: 48 IVAQLLFLEAENPKKDIYMYINSPGGVITAGLAIYDTMQYIKPKVATLCIGQ--ACSMGS 105 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 L+ C + I+ +K + + Sbjct: 106 LLLCGGEKGMR-----YSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSK 160 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 Q ++ + S + EAKK G+ID + + Sbjct: 161 HTRQELKHIEKSMERDN----------------------FMSPEEAKKFGIIDNIISSRD 198 Query: 233 VWQSLYA 239 Sbjct: 199 AMTMSAK 205 >gi|329116784|ref|ZP_08245501.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Streptococcus parauberis NCFD 2020] gi|326907189|gb|EGE54103.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Streptococcus parauberis NCFD 2020] Length = 196 Score = 36.1 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 2/123 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED + +I ++ + D+ + + +++PGGS AG AI + +K+ Sbjct: 27 IIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S + + D V+ + +K+ Sbjct: 87 QTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGNGTQQSDMAIVAEQLLKT 146 Query: 158 SPM 160 Sbjct: 147 RKR 149 >gi|124027194|ref|YP_001012514.1| hypothetical protein Hbut_0297 [Hyperthermus butylicus DSM 5456] gi|123977888|gb|ABM80169.1| hypothetical protein Hbut_0297 [Hyperthermus butylicus DSM 5456] Length = 241 Score = 36.1 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+ ++ I + + L +PGG A I A+++ +K VI + M Sbjct: 23 IEDSEAVLRAIR---TTPPNKPIALILHTPGGLVLAASQIAMALKRHPGKKIVIVPHYAM 79 >gi|319757818|gb|ADV69760.1| ClpP protease family protein [Streptococcus suis JS14] Length = 231 Score = 36.1 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 60/192 (31%), Gaps = 37/192 (19%) Query: 41 IAIRGQIEDSQELIERIE-RISRDDSATA---LIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 + I GQI D + + ++ ++D + + ++SPGG +A I+ + + Sbjct: 16 LRIEGQIADETWFGDEVTPQVFKNDLHAGNGDITLWINSPGGDVFAAAQIYNMLMDY--K 73 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 V + +AASA +I+ A + + +++ +V Sbjct: 74 GDVHVVIDGLAASAASVIAMAGTTVSMSPVAMMMIHN------------------PWTVA 115 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TG 215 K + + + K L D W Sbjct: 116 QGEAKDMQKVIEMLGE------------IKESIINAYELRTGLSRTKLSHLMDSESWFNA 163 Query: 216 AEAKKVGLIDVV 227 +A ++G D + Sbjct: 164 KKAVELGFADKI 175 >gi|317147490|ref|XP_001822169.2| carnitinyl-CoA dehydratase [Aspergillus oryzae RIB40] Length = 289 Score = 36.1 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 46/158 (29%), Gaps = 3/158 (1%) Query: 84 EAIF--RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 E I +++ + + + + + L Sbjct: 41 ELIRAFNTVRQTLGSNSEGAVITRGNNAKYFCTGLDLDEAEQNPHATTEGFYPLLHTILD 100 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 PF ++ + A + +N + + VD ++ V + Sbjct: 101 FPFPTIALLTGHTFGGGCPVAFAHDYRVMNSQRGFISMPPVDLGMYFPGVGVLPRLKLRP 160 Query: 202 DKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 L +G +TG EA + GL+D + +++ + Sbjct: 161 QIARKVLLEGHRFTGEEALRDGLVDFIAQPDDMLAVAF 198 >gi|263173376|gb|ACY69926.1| hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Cimex lectularius] Length = 245 Score = 36.1 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 7/106 (6%) Query: 188 WFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIR 247 + + + L G+++T EA VGL+D + ++ Sbjct: 131 QWFQDCMRNTIGERQAEKALVSGKMFTSDEALVVGLVDELANDKD---EAVKKCETFLES 187 Query: 248 KIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293 + K + + +N ++S LL + + ++ P Sbjct: 188 QSKLPSLARRTVKLGFRNDTLSRLLNGR-EADTKLFLD---YIFQP 229 >gi|238495947|ref|XP_002379209.1| carnitinyl-CoA dehydratase, putative [Aspergillus flavus NRRL3357] gi|220694089|gb|EED50433.1| carnitinyl-CoA dehydratase, putative [Aspergillus flavus NRRL3357] Length = 207 Score = 36.1 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 46/158 (29%), Gaps = 3/158 (1%) Query: 84 EAIF--RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 E I +++ + + + + + L Sbjct: 16 ELIRAFNTVRQTLGSNSEGAVITRGNNAKYFCTGLDLDEAEQNPHATTEGFYPLLHTILD 75 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 PF ++ + A + +N + + VD ++ V + Sbjct: 76 FPFPTIALLTGHTFGGGCPVAFAHDYRVMNSQRGFISMPPVDLGMYFPGVGVLPRLKLRP 135 Query: 202 DKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 L +G +TG EA + GL+D + +++ + Sbjct: 136 QIARKVLLEGHRFTGEEALRDGLVDFIAQPDDMLAVAF 173 >gi|94309750|ref|YP_582960.1| hypothetical protein Rmet_0805 [Cupriavidus metallidurans CH34] gi|93353602|gb|ABF07691.1| Putative membrane-bound serine protease (Clpp class), S49 family [Cupriavidus metallidurans CH34] Length = 491 Score = 36.1 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 67/223 (30%), Gaps = 17/223 (7%) Query: 9 KTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSA 66 + + L ++ + S+ P V I IRG I + + IE+ S+ A Sbjct: 41 RALGLTLLAISGAHAQSASSASTAPAVPPVYVIPIRGAISPASASFAVHGIEQASKH-GA 99 Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 +++ + +PGG + I +AI +A T Sbjct: 100 QLIVIEMDTPGGLDKSMRDIIQAIIASPVPVATYVYPG-------------GARAASAGT 146 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 ++ + + P P+ P A M Sbjct: 147 YILYASHIAAMAPGTNLGAASPVAIGIGGPKPEAGPAPASAPSSAPAAEDTMTRKQMHDA 206 Query: 187 HWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVG 228 ++R +++ R+ D + + + EA + D++ Sbjct: 207 SAYIRGLAQLRHRNADWGERAVREAVSLSADEAVAQHVADLIA 249 >gi|46110353|ref|XP_382234.1| hypothetical protein FG02058.1 [Gibberella zeae PH-1] Length = 157 Score = 36.1 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 48/160 (30%), Gaps = 24/160 (15%) Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + ++SPGGS +G AI+ + +K+ + + +A L + + S + Sbjct: 1 MYINSPGGSVTSGMAIYDTMTYIKSPVSTVCIGGAASMAAILLAGGEAGKRFSLPHSSIM 60 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 L + I+ + K ++ Sbjct: 61 IHQPLGGTRGQASDIMIYANQIQKTREQSNKIMQYHLNKAKGHD---------------- 104 Query: 191 RLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGG 229 ++ L + + T EA +G+ID + Sbjct: 105 -------KYSLEEINDLMERDKYLTPEEALDLGVIDEILT 137 >gi|283779543|ref|YP_003370298.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pirellula staleyi DSM 6068] gi|283437996|gb|ADB16438.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pirellula staleyi DSM 6068] Length = 205 Score = 36.1 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 53/179 (29%), Gaps = 31/179 (17%) Query: 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 + ++ ++ + DD + + ++SPGGS AG AI+ +Q V + Sbjct: 41 ANAIVAQMLFLQSDDPKADIHLYINSPGGSISAGMAIYDTMQFVTCDVATYCIGQAASMG 100 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 A L + A A + + L Sbjct: 101 AVLLTAGAPGKRFALPNARIMIHQPLAGMQG----------------------------- 131 Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227 + + + ++ + P +K R + AEA + ++D V Sbjct: 132 -TAEEIMIHAKEFRRIKQRMNEIMLKHTGQPMEKIESDTDRDRFMSAAEAAEYRIVDKV 189 >gi|254471425|ref|ZP_05084827.1| 3-hydroxybutyryl-CoA dehydratase [Pseudovibrio sp. JE062] gi|211959571|gb|EEA94769.1| 3-hydroxybutyryl-CoA dehydratase [Pseudovibrio sp. JE062] Length = 271 Score = 36.1 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 28/90 (31%) Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 +V + + +R P + T EA + GL+D V + Sbjct: 147 ENVKFKGMEVPNGWITPWGFHALNARMAPRHAQRAAWGYKFMTATEALRTGLVDEVVALD 206 Query: 232 EVWQSLYALGVDQSIRKIKDWNPPKNYWFC 261 +++++ + + K ++ Sbjct: 207 DLFETARTIAEQLAALPPVSVQATKRWYLD 236 >gi|297538721|ref|YP_003674490.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylotenera sp. 301] gi|297258068|gb|ADI29913.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylotenera sp. 301] Length = 219 Score = 36.1 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 2/114 (1%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G + D ++ ++ + ++ + + ++SPGGS AG +I+ +Q +K Sbjct: 51 VIFLVGPVNDMSANLVVAQLLFLEAENPDKDISLYINSPGGSVTAGMSIYDTMQFIKADV 110 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + + A L + A + S V + ++ Sbjct: 111 STLCIGQAASMGAFLLAAGAKGKRFSLPNSRVMIHQPSGGFQGQSTDIEIHAKE 164 >gi|170056139|ref|XP_001863897.1| 3,2-trans-enoyl-CoA isomerase, mitochondrial [Culex quinquefasciatus] gi|167875865|gb|EDS39248.1| 3,2-trans-enoyl-CoA isomerase, mitochondrial [Culex quinquefasciatus] Length = 283 Score = 36.1 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSL 237 + + D + L+ G ++T EA KVGL+D V E+ Sbjct: 167 WFMASMRNAMSRRDAEMALTLGTLFTTDEALKVGLVDEVATSKEDAIAKA 216 >gi|212696598|ref|ZP_03304726.1| hypothetical protein ANHYDRO_01138 [Anaerococcus hydrogenalis DSM 7454] gi|325847156|ref|ZP_08169955.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|212676329|gb|EEB35936.1| hypothetical protein ANHYDRO_01138 [Anaerococcus hydrogenalis DSM 7454] gi|325480936|gb|EGC83982.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 195 Score = 36.1 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G +ED S +I ++ + D + ++SPGG AG AI+ + +K Sbjct: 33 IIFLTGPVEDGVSDIIIAQLLFLESQDPNKDIQFYINSPGGVVTAGLAIYDTMNYIKPDV 92 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + A L S A + S + Sbjct: 93 STICIGQAASMGAVLLSSGAKGKRFSLPNSNILIHQPSGGAQGQ---------------- 136 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-WTGA 216 +Q+ + + +++S++ +K +D Sbjct: 137 --------------ASDIQIQAEQILKIKKRLNKILSDNTGQTIEKIQKDTDRDFSMDAY 182 Query: 217 EAKKVGLIDVV 227 EAK+ GLID V Sbjct: 183 EAKEYGLIDKV 193 >gi|220931947|ref|YP_002508855.1| periplasmic serine protease (ClpP class) [Halothermothrix orenii H 168] gi|219993257|gb|ACL69860.1| periplasmic serine protease (ClpP class) [Halothermothrix orenii H 168] Length = 265 Score = 36.1 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 5/105 (4%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS++++ I + +++ +PGG A E I AI+K VI + M Sbjct: 67 IEDSEQILRAIRSTPDEKPID-ILLH--TPGGLVLAAEQIAMAIKKHPAPVRVIVPHYAM 123 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 + G LI+ A++ I+ + +++G + L Sbjct: 124 SG--GTLIALAADEIIMDKNAVLGPVDPQIGQYPAVSILKTASTK 166 >gi|145250727|ref|XP_001396877.1| enoyl-CoA hydratase/isomerase family protein [Aspergillus niger CBS 513.88] gi|134082399|emb|CAK42414.1| unnamed protein product [Aspergillus niger] Length = 274 Score = 36.1 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 20/181 (11%), Positives = 49/181 (27%) Query: 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKP 143 + I + + +K V+ + + Y P Sbjct: 52 FLLALDIIEHRYQKGVLITTSGIPKFYSNGLDLELAQSTEGFLDKWLWKLFRRLLTYPMP 111 Query: 144 FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 + L + + + + + + V + P Sbjct: 112 TIALLNGHAFAGGFMLAMYHDYRIQNPSKGFLCINELEFGVPLQAPMMHVFREKLTPSVC 171 Query: 204 TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDL 263 V+ + + + G EA +VG++D +GG EE + + + + + + L Sbjct: 172 RDVVLEAKRFPGPEALRVGIVDGLGGVEETLKFVKERKLVLMPKTEIYGVMKEEMYRRLL 231 Query: 264 K 264 Sbjct: 232 G 232 >gi|317403655|gb|EFV84143.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter xylosoxidans C54] Length = 369 Score = 36.1 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 69/228 (30%), Gaps = 46/228 (20%) Query: 31 VEDNSPHVARIAIRGQI----EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAI 86 V I I +I ++ + ++ + ++VSL+SPGG + AI Sbjct: 12 KAQAEKPVVEIRIYDEISFWGTTAEAFVAELDAAAA--GGADIVVSLNSPGGDVFDALAI 69 Query: 87 FRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 + A+++ + + A++ I + + Sbjct: 70 YNALRR---------YAGRVTTRVDGFAASAAS-----------LIAMAGDQLIMPENAQ 109 Query: 147 KLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 + + ++ + ++ D++D V + DK + Sbjct: 110 LMIHNAWTITGG------------TAEDLRSTADMMDRVRDGVVAAYARKSGQDADKIVE 157 Query: 207 LSDGRIW-TGAEAKKVGLIDVV-------GGQEEVWQSLYALGVDQSI 246 + D W + EA+ +G D++ + + L + Sbjct: 158 MMDATTWMSALEAQALGFCDLIEDPVRLQMSSDLAAEVLRKHKNLPAE 205 >gi|170287818|ref|YP_001738056.1| hypothetical protein TRQ2_0011 [Thermotoga sp. RQ2] gi|170175321|gb|ACB08373.1| protein of unknown function DUF114 [Thermotoga sp. RQ2] Length = 284 Score = 36.1 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 4/109 (3%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+E++ I+ D ++ +PGG A E I RA++ K + H Sbjct: 72 IEDSEEILRAIKLTPSDMPIDLIL---HTPGGLVLAAEQIARALKMH-KGKVTVFVPHYA 127 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 + + A II+ L + P + V Sbjct: 128 MSGGTLIALAADEIIMDENAVLGPLDPQIGNMPAPSILAAVKKKDVNEV 176 >gi|116617520|ref|YP_817891.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227432636|ref|ZP_03914612.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|116096367|gb|ABJ61518.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227351606|gb|EEJ41856.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 200 Score = 36.1 bits (81), Expect = 5.8, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 2/116 (1%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I ++G+IEDS ++ ++ + D + + ++SPGGS AG +I + +K Sbjct: 27 IILVQGEIEDSMATSIVAQLLFLEAQDPTKEISMYINSPGGSVTAGLSITDTMNFIKAPV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 I + S + + D ++ + Sbjct: 87 TTIVMGLAASMGTIIAASGEKGHRFMLPNAEYLIHQPMGGAAGGTQQTDMAIIAEQ 142 >gi|253560560|gb|ACT32990.1| putative 3,2-trans-enoyl-CoA isomerase [Culex pipiens pipiens] Length = 132 Score = 36.1 bits (81), Expect = 5.8, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSL 237 + + D L L+ G ++T EA KVGL+D V E+ Sbjct: 17 WFMASMRNTMSRRDAELALTLGTLFTTDEALKVGLVDEVATSKEDAIAKA 66 >gi|315170930|gb|EFU14947.1| Clp protease [Enterococcus faecalis TX1342] Length = 247 Score = 36.1 bits (81), Expect = 5.9, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 69/199 (34%), Gaps = 23/199 (11%) Query: 40 RIAIRGQI----------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 + + G I D++ + E ++ ++ D + + L+SPGG + G I+ Sbjct: 21 VLTLSGNIRKKYWSDDDVIDAKSIRETLDGVTED-----ITIKLNSPGGDVFEGVEIYNY 75 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLG 149 ++ ++ V +AASA I A++ + + V K + K Sbjct: 76 LKDHPSKVTVEV--TGVAASAATFILSAADEAIMNVGTSVMIHEASTFTWGNKQDIQKTL 133 Query: 150 VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW-----FVRLVSESRNIPYDKT 204 +++++ S + + + M++ + F V ++ + Sbjct: 134 NALETIDDSILSIYSQKTGQTTDQLETWMKEEKWFTAEEAVEYGFATEVKKNTEKNSTDS 193 Query: 205 LVLSDGRIWTG-AEAKKVG 222 + AEA + Sbjct: 194 KENIAEMVKNAVAEAMSLN 212 >gi|88763676|gb|ABD49508.1| capsid protein [Wolbachia phage WO] Length = 113 Score = 36.1 bits (81), Expect = 5.9, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 FV+L++ +RN + G + G A +VGL D + E Sbjct: 3 EMFVQLIARNRNFSIEVIKSTEAGLYF-GENAIEVGLADGITTFCEFINK 51 >gi|47027404|gb|AAT08780.1| capsid protein [Wolbachia phage WO] Length = 86 Score = 36.1 bits (81), Expect = 5.9, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 V+L++ +R + +K +++ ++ G +A ++GL D V E Sbjct: 1 EMLVQLIARNRGLSIEKIR-ITEAGLYFGEKAVEIGLADGVTTFFEFIN 48 >gi|91076194|ref|XP_971998.1| PREDICTED: similar to caseinolytic protease, ATP-dependent, proteolytic subunit homolog [Tribolium castaneum] gi|270014730|gb|EFA11178.1| hypothetical protein TcasGA2_TC004785 [Tribolium castaneum] Length = 234 Score = 36.1 bits (81), Expect = 5.9, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 59/193 (30%), Gaps = 31/193 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I D S ++ ++ + + + + + ++SPGGS AG I+ +Q + Sbjct: 50 IICLMGPINDPMSSLIVAQLLFLQSESTNKPIHMYINSPGGSVTAGLGIYDTMQYILPPI 109 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + + + S+ + P ++ L + I Sbjct: 110 ATWCV---------------------GQAASMASLLLAAGSPGMRHSLPHARIMIHQPSG 148 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 + Q H + L R++ D + E Sbjct: 149 GAQGQATDIKIQAEEILKLKSQINNLYVKHTGLALEKIERSMERD--------MFMSPVE 200 Query: 218 AKKVGLIDVVGGQ 230 A+ G+ID + Sbjct: 201 AQSFGIIDKILTS 213 >gi|158522703|ref|YP_001530573.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfococcus oleovorans Hxd3] gi|259585950|sp|A8ZXB7|CLPP_DESOH RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|158511529|gb|ABW68496.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfococcus oleovorans Hxd3] Length = 205 Score = 36.1 bits (81), Expect = 6.0, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 65/203 (32%), Gaps = 33/203 (16%) Query: 40 RIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + I I+D LI ++ + +D + ++SPGG AG AI+ +Q +K+ Sbjct: 29 IVFIGSAIDDETANLLIAQLLFLESEDPDKDINFYINSPGGKVSAGMAIYDTMQYIKSDI 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 + H + A L + A + S + + Sbjct: 89 ATVCIGHAASMGAFLLAAGAKGKRFSLPNSRIMIHQPMGGAQGQ---------------- 132 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + + + ++++ P ++ V +D + +G Sbjct: 133 --------------ASDIAIQAKEILRMKDILNQILAHHTGKPLEQIQVDTDRDFFMSGE 178 Query: 217 EAKKVGLIDVVGGQEEVWQSLYA 239 EAK G++D V L Sbjct: 179 EAKAYGIVDHVITDRSDLDKLEK 201 >gi|315165627|gb|EFU09644.1| Clp protease [Enterococcus faecalis TX1302] Length = 239 Score = 36.1 bits (81), Expect = 6.0, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 65/195 (33%), Gaps = 15/195 (7%) Query: 40 RIAIRGQIE----DSQELIER--IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 + + G I ++I+ I D + + L+SPGG + G I+ ++ Sbjct: 21 VLTLSGNIRKKYWSDDDVIDAKSIRETL-DGVTDDITIKLNSPGGDVFEGVEIYNYLKDH 79 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 ++ V +AASA I A++ + + V K + K +++ Sbjct: 80 PSKVTVEV--TGVAASAATFILSAADEAIMNVGTSVMIHEASTFTWGNKQDIQKTLNALE 137 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW-----FVRLVSESRNIPYDKTLVLS 208 ++ S + + + M++ + F V ++ + Sbjct: 138 TIDDSILSIYSQKTGQTTDQLETWMKEEKWFTAEEAVEYGFATEVKKNTEKNSTDSKENI 197 Query: 209 DGRIWTG-AEAKKVG 222 + AEA + Sbjct: 198 AEMVKNAVAEAMSLN 212 >gi|295695466|ref|YP_003588704.1| protein of unknown function DUF114 [Bacillus tusciae DSM 2912] gi|295411068|gb|ADG05560.1| protein of unknown function DUF114 [Bacillus tusciae DSM 2912] Length = 276 Score = 36.1 bits (81), Expect = 6.1, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 15/168 (8%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS++++ I D + L +PGG A E I A++ V V Sbjct: 65 IEDSEQVLRAIRLTPDDMPID---LVLHTPGGLVLAAEQIAAALKAHPAD--VTVYVPHY 119 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 A S G LI+ A++ IV E +++G + L ++ + E Sbjct: 120 AMSGGTLIALAADRIVMDENAVLGPVDPQLGQWPAASILRLTRTK----EAKDIDDETWI 175 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT 214 +++ KA+ +++ V + + WT Sbjct: 176 MADMAEKAIHQVREFVANLLREHFTDNQAR------DLAEILSEGTWT 217 >gi|313216516|emb|CBY37812.1| unnamed protein product [Oikopleura dioica] Length = 271 Score = 36.1 bits (81), Expect = 6.1, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 29/75 (38%) Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L G +++G A ++GLID + +++ + + K K D N Sbjct: 173 ALQLGHLYSGERALEIGLIDELVEPDDMMERVIENLKLWLKVPPKARAITKQLLRQDTAN 232 Query: 266 LSISSLLEDTIPLMK 280 IS +D +K Sbjct: 233 KLISKKEQDIETFVK 247 >gi|301060520|ref|ZP_07201360.1| ATP-dependent Clp protease, proteolytic subunit ClpP [delta proteobacterium NaphS2] gi|300445363|gb|EFK09288.1| ATP-dependent Clp protease, proteolytic subunit ClpP [delta proteobacterium NaphS2] Length = 202 Score = 36.1 bits (81), Expect = 6.1, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 67/205 (32%), Gaps = 33/205 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I I Q+ D + +I ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 28 IIFITDQVADPMANTVIAQMLFLESEDPEKDIHMYINSPGGSVTAGLAIYDTMQYIKPDV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L + A A S + L +D I + Sbjct: 88 ATICMGQTSSMAALLLAAGAKEKRYALPHSRIMIHQPLGGAQGQATDIDIHAREILKI-- 145 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-GA 216 ++++E + ++ + Sbjct: 146 ----------------------------RDNLNQILAEHTGTDIKRIRKDTERDFFMDSQ 177 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALG 241 +AK G+ID V + E+ L Sbjct: 178 QAKDYGIIDRVIHKREIKDLLTEEK 202 >gi|260587185|ref|ZP_05853098.1| ClpP protease family protein [Blautia hansenii DSM 20583] gi|260542380|gb|EEX22949.1| ClpP protease family protein [Blautia hansenii DSM 20583] Length = 416 Score = 36.1 bits (81), Expect = 6.2, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 32/182 (17%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +E + +D + V L+S GG Y G AI A++ + VI +AASA Sbjct: 65 EGFMEDL-AAVKDKG--HITVKLNSCGGDLYTGIAIHNALKALSGEVNVIV--EGIAASA 119 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +I CA + + SL+ GV D ++ Sbjct: 120 ASVIMCAGDTVTVYPGSLIMIHGVSVMLWDYMNMQD--------------------MKQL 159 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + V + V R++ + +TG EA + G D + Sbjct: 160 MKGMDASERAVAEIYNSKTGIEVDTLRSMMTKE-------TWFTGREALEKGFADAIKED 212 Query: 231 EE 232 E+ Sbjct: 213 ED 214 >gi|313236569|emb|CBY19861.1| unnamed protein product [Oikopleura dioica] Length = 271 Score = 36.1 bits (81), Expect = 6.2, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 29/75 (38%) Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 L G +++G A ++GLID + +++ + + K K D N Sbjct: 173 ALQLGHLYSGERALEIGLIDELVEPDDMMERVIENLKLWLKVPPKARAITKQLLRQDTAN 232 Query: 266 LSISSLLEDTIPLMK 280 IS +D +K Sbjct: 233 KLISKKEQDIETFVK 247 >gi|296158498|ref|ZP_06841329.1| Enoyl-CoA hydratase/isomerase [Burkholderia sp. Ch1-1] gi|295891442|gb|EFG71229.1| Enoyl-CoA hydratase/isomerase [Burkholderia sp. Ch1-1] Length = 337 Score = 36.1 bits (81), Expect = 6.2, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 17/35 (48%) Query: 202 DKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 ++ GR + EA +GLID +G +++ Sbjct: 153 AALDLILSGRHASSKEALALGLIDRLGSSDDILAE 187 >gi|254283061|ref|ZP_04958029.1| membrane-bound serine protease [gamma proteobacterium NOR51-B] gi|219679264|gb|EED35613.1| membrane-bound serine protease [gamma proteobacterium NOR51-B] Length = 477 Score = 36.1 bits (81), Expect = 6.2, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 6/225 (2%) Query: 30 HVEDNSPHVARIAIRGQIEDSQ-ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR 88 + V + + I + + ++R + + A LI++L +PGG + + + Sbjct: 24 SAQPEQRSVFLLTVADAITPATMDYVQRGIAYAESEGAELLIIALDTPGGLMASTHDLIK 83 Query: 89 AIQKVKNRKPVITEV-HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 +I + AASAG I AS++ A + +GS + D Sbjct: 84 SILASRVPVATYVYPSGSRAASAGAYIVLASHVAAMAPATHIGSATPVQIGGLPSLPSDD 143 Query: 148 LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES--RNIPYDKTL 205 V+ ++ + + P + A M+ V ++R ++ RN + + Sbjct: 144 APVTPEAPMEQGAEPQNLPAQSPSAAAPSAMERKVLEDAVSYIRELAARHDRNSDWAE-R 202 Query: 206 VLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKI 249 + D EA +ID+V +E+ Q++ V + ++ Sbjct: 203 AVRDAANLGAQEALAQNVIDLVADDIDELLQAIDGRVVRMAYGEV 247 >gi|197105990|ref|YP_002131367.1| enoyl-CoA hydratase/carnithine racemase [Phenylobacterium zucineum HLK1] gi|196479410|gb|ACG78938.1| enoyl-CoA hydratase/carnithine racemase [Phenylobacterium zucineum HLK1] Length = 258 Score = 36.1 bits (81), Expect = 6.3, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 21/67 (31%) Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLL 272 + EA +GLI V G ++V ALG + + + + +L Sbjct: 173 LSAQEALDIGLITRVAGDDDVVAEAVALGEKLAAAPALQMQLTRELLRENSGEHDANVVL 232 Query: 273 EDTIPLM 279 Sbjct: 233 ARETEAF 239 >gi|320451100|ref|YP_004203196.1| periplasmic serine protease [Thermus scotoductus SA-01] gi|320151269|gb|ADW22647.1| periplasmic serine protease [Thermus scotoductus SA-01] Length = 277 Score = 36.1 bits (81), Expect = 6.3, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 5/106 (4%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 I+DS++++ I D + + + L +PGG A E I A+ + + V V Sbjct: 68 IDDSEQVLRAIR--LTDKNVP-IDLILHTPGGLVLAAEQIAEALLRHPAK--VTVFVPHY 122 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 A S G LI+ A++ IV E +++G + L L Sbjct: 123 AMSGGTLIALAADEIVMDENAVLGPVDPQLGQYPAASILKVLEKKP 168 >gi|281487007|gb|ADA71055.1| putative capsid protein [Wolbachia phage WO] Length = 118 Score = 36.1 bits (81), Expect = 6.3, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y FV+L++ +R + +K G + G +A ++G+ D V E + + V + Sbjct: 13 YEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGVADGVTTFFEFINNHKSRSVSMT 71 Query: 246 IRKIKDWNPPK 256 ++ + Sbjct: 72 TNELTEEGYEN 82 >gi|92115975|ref|YP_575704.1| hypothetical protein Nham_0348 [Nitrobacter hamburgensis X14] gi|91798869|gb|ABE61244.1| protein of unknown function DUF107 [Nitrobacter hamburgensis X14] Length = 465 Score = 36.1 bits (81), Expect = 6.4, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 4/107 (3%) Query: 24 YFSWSSHVEDNSPHVARIAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAY 81 + + E+N V IAI G I + + + + + A A+I+ L++PGG A Sbjct: 19 FSPLPASTEENGKLVLTIAIDGAIGPATTGYVKDALAKARE-RHAEAVILRLNTPGGLAS 77 Query: 82 AG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 + E I + + AASAG I A++I A + Sbjct: 78 SMREIIADVLASPVPVIGYVAPSGAHAASAGTYILYATHIAAMAPGT 124 >gi|328720470|ref|XP_003247040.1| PREDICTED: probable ubiquitin carboxyl-terminal hydrolase FAF-X-like isoform 2 [Acyrthosiphon pisum] gi|328720472|ref|XP_001946927.2| PREDICTED: probable ubiquitin carboxyl-terminal hydrolase FAF-X-like isoform 1 [Acyrthosiphon pisum] Length = 2593 Score = 36.1 bits (81), Expect = 6.5, Method: Composition-based stats. Identities = 30/262 (11%), Positives = 76/262 (29%), Gaps = 37/262 (14%) Query: 51 QELIERIERISRDDS-----ATALIVSLSSPGGSAYAGEAIFRAIQKV------------ 93 ++L+E I R++ DD L++ + G + E I +A+ Sbjct: 508 EKLLELIRRLAEDDKDGVMAHKVLMLFWNLAHGEDVSTEIIDQALSAHVKILDYSCAQDR 567 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 +K + + + L S V + ++ Sbjct: 568 DAQKTAWLDKCVDELKSNSSWVLPVLKHMRDICMLYDSSPVGAHQAPAHTLYRQEIIAR- 626 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV------- 206 + ++ + + ++ + R + Sbjct: 627 --LQNNHTLVSLVTDNLSKYMDDVRKVAQENHNLDPANYYPDGRYCHLQQVQERLYFLKF 684 Query: 207 -LSDGRIWT-GAEAKK--VGLIDV---VGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYW 259 L DG +W +A + + L + + +E ++ L ++ D + ++ Sbjct: 685 CLKDGNLWLCAEQAHQVWIALAEKAVFLADREACFRWFSKLMGEEPD---IDPSINTKFF 741 Query: 260 FCDLKNLSISSLLEDTIPLMKQ 281 +L L + L E+ I ++ Sbjct: 742 INNLLQLDPTLLTENGIKCFER 763 >gi|170734224|ref|YP_001766171.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Burkholderia cenocepacia MC0-3] gi|169817466|gb|ACA92049.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Burkholderia cenocepacia MC0-3] Length = 708 Score = 36.1 bits (81), Expect = 6.5, Method: Composition-based stats. Identities = 7/36 (19%), Positives = 15/36 (41%) Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 ++ GR + EA +GL+D + ++ Sbjct: 154 KAALDLMLTGRHASAEEALALGLVDRIAHSDDTLAE 189 >gi|107023812|ref|YP_622139.1| 3-hydroxyacyl-CoA dehydrogenase, NAD-binding [Burkholderia cenocepacia AU 1054] gi|105894001|gb|ABF77166.1| 3-hydroxyacyl-CoA dehydrogenase [Burkholderia cenocepacia AU 1054] Length = 708 Score = 36.1 bits (81), Expect = 6.5, Method: Composition-based stats. Identities = 7/36 (19%), Positives = 15/36 (41%) Query: 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 ++ GR + EA +GL+D + ++ Sbjct: 154 KAALDLMLTGRHASAEEALALGLVDRIAHSDDTLAE 189 >gi|281487011|gb|ADA71057.1| putative capsid protein [Wolbachia phage WO] Length = 118 Score = 36.1 bits (81), Expect = 6.6, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y FV+L++ +R + +K G + G +A ++G+ D V E + + V + Sbjct: 13 YEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGVADGVTTFFEFINNHKSRSVSMT 71 Query: 246 IRKIKDWNPPK 256 ++ + Sbjct: 72 TNELTEEGYEN 82 >gi|153814261|ref|ZP_01966929.1| hypothetical protein RUMTOR_00470 [Ruminococcus torques ATCC 27756] gi|145848657|gb|EDK25575.1| hypothetical protein RUMTOR_00470 [Ruminococcus torques ATCC 27756] Length = 268 Score = 36.1 bits (81), Expect = 6.6, Method: Composition-based stats. Identities = 26/212 (12%), Positives = 64/212 (30%), Gaps = 35/212 (16%) Query: 41 IAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 + + G I D E+ ++ + + + V ++SPGG +A I+ ++ K Sbjct: 23 LFLNGMISDETWYGDEVTPQLFKDELNAGNGNITVWINSPGGDVFAAAQIYNMLRDYKGS 82 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 V I S I + V P + + ++ Sbjct: 83 VTV--------------------KIDGIAASAASVIAMAGDTVCVSPVAMMMIHNPATMA 122 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216 K + +N +++ + ++Y + L + D + Sbjct: 123 MGEAKDMQKAIAMLNE-----VKESILNAYEFKTGLTRARLSHMMDDE------TWFNAK 171 Query: 217 EAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248 +A ++G D + + + + + Sbjct: 172 KAVELGFADKILFDSDEDEKKKKPDEPEEKPE 203 >gi|254776325|ref|ZP_05217841.1| enoyl-CoA hydratase [Mycobacterium avium subsp. avium ATCC 25291] Length = 257 Score = 36.1 bits (81), Expect = 6.7, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 18/35 (51%) Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 + GR + EA +GLID + ++V+ + A Sbjct: 167 VFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWA 201 >gi|257439336|ref|ZP_05615091.1| ClpP protease family protein [Faecalibacterium prausnitzii A2-165] gi|283798244|ref|ZP_06347397.1| ClpP protease family protein [Clostridium sp. M62/1] gi|257198211|gb|EEU96495.1| ClpP protease family protein [Faecalibacterium prausnitzii A2-165] gi|291074025|gb|EFE11389.1| ClpP protease family protein [Clostridium sp. M62/1] Length = 416 Score = 36.1 bits (81), Expect = 6.7, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 32/182 (17%) Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 + +E + +D + V L+S GG Y G AI A++ + VI +AASA Sbjct: 65 EGFMEDL-AAVKDKG--HITVKLNSCGGDLYTGIAIHNALKALSGEVNVIV--EGIAASA 119 Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 +I CA + + SL+ GV D ++ Sbjct: 120 ASVIMCAGDTVTVYPGSLIMIHGVSVMLWDYMNMQD--------------------MKQL 159 Query: 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 + V + V R++ + +TG EA + G D + Sbjct: 160 MKGMDASERAVAEIYNSKTGIEVDTLRSMMTKE-------TWFTGREALEKGFADAIKED 212 Query: 231 EE 232 E+ Sbjct: 213 ED 214 >gi|127512714|ref|YP_001093911.1| hypothetical protein Shew_1786 [Shewanella loihica PV-4] gi|126638009|gb|ABO23652.1| protein of unknown function DUF107 [Shewanella loihica PV-4] Length = 500 Score = 36.1 bits (81), Expect = 6.7, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 18/237 (7%) Query: 27 WSSHVEDNSPH-VARIAIRGQIEDS--QELIERIERISRDD---SATALIVSLSSPGGSA 80 S + +P + + G I + + L E I+ +R +++ L +PGG Sbjct: 35 NSESAQQTTPQPIPLLQFSGAIGPAIGEYLSEEIDHANRLPAELRPELIMIVLDTPGGLV 94 Query: 81 YAGEAIFRAIQKVKNRKPV-ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYP 139 + +I +AI K + A SAG + A +I A + +G+ + Sbjct: 95 TSLRSINQAILASKIPIACLVAPPGARAMSAGTYMLYACHIAAMAPATTLGAATPVQLGM 154 Query: 140 YVKPFLDKLGVSIKSVKS---------SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 P G S A S M V + ++ Sbjct: 155 PSSPQDSGSGSGSGSDPKESGSQDKAAQKDGAGQSTPESTPKDNKDAMAHKVLNDAVAYI 214 Query: 191 RLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVV-GGQEEVWQSLYALGVDQS 245 R ++ R + + D T EA +ID++ +E+ L V Sbjct: 215 RSLANLRGRNVEFAERAVIDAATLTSDEALAQNVIDLIAADPQELVAKLEGFSVVVD 271 >gi|296108638|ref|YP_003620339.1| transmembrane protein [Legionella pneumophila 2300/99 Alcoy] gi|295650540|gb|ADG26387.1| transmembrane protein [Legionella pneumophila 2300/99 Alcoy] Length = 435 Score = 36.1 bits (81), Expect = 6.7, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 76/236 (32%), Gaps = 30/236 (12%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDDSATALIVSLSS 75 + + + F + + + I+G I + L I+ A +++ + + Sbjct: 6 IFIFLTLFLLVGLQTSFAAKIVELNIKGPIGPATADYLERGIKSAQD---ADLIVILIDT 62 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 PGG ++ IQ I +A T L+ + + Sbjct: 63 PGGL---YDSTRNIIQLFLLSDVPIVTYVSPTG----------ARAASAGTYLMYASTLA 109 Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 P + + K M++ V +R +++ Sbjct: 110 AMAPGTQMGAASPVSLGTGFSEGEK----------DEKKKSTMENKVTHDAVATIRSLAQ 159 Query: 196 SRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYALGVDQSIRKI 249 R D +++G+ T EA G+++ + ++++ ++ + V Q+ + I Sbjct: 160 LRGRDPDFAEKAVTEGKSITANEALSKGVVNYIAKNRDDLLSQIHGIKVSQNNKTI 215 >gi|281487001|gb|ADA71052.1| putative capsid protein [Wolbachia phage WO] Length = 118 Score = 36.1 bits (81), Expect = 6.7, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y FV+L++ +R + +K G + G +A ++G+ D V E + + V + Sbjct: 13 YEMFVQLIARNRGLSTEKIRSTEAGLYF-GEKAVEIGVADGVTTFFEFINNHKSRSVSMT 71 Query: 246 IRKIKDWNPPK 256 ++ + Sbjct: 72 TNELTEEGYEN 82 >gi|206896036|ref|YP_002246921.1| periplasmic serine protease [Coprothermobacter proteolyticus DSM 5265] gi|206738653|gb|ACI17731.1| periplasmic serine protease [Coprothermobacter proteolyticus DSM 5265] Length = 264 Score = 36.1 bits (81), Expect = 6.7, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 64/182 (35%), Gaps = 12/182 (6%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 +EDS+ ++ I D + L +PGG A E I RA+ + VI + Sbjct: 51 TMEDSEAVLTAIRSTPPDTPID---LVLHTPGGLVLAAEQIARALYMHPAKTTVIIPHYA 107 Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS-IKSVKSSPMKAEP 164 M+ G LI+ A++ I+ + +++G + L + +++V + Sbjct: 108 MSG--GTLIALAADQIIMDKHAVIGPLDPQINGLPAASILQAVKDKGVQNVDDQTLILAD 165 Query: 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGL- 223 ++ + + V+ + EAK++ L Sbjct: 166 ISRKAIDQVKDTVKWFLRKHMDEEKAEEVA-----TLLCEGYYTHDNPIFAEEAKQLNLN 220 Query: 224 ID 225 ID Sbjct: 221 ID 222 >gi|41409185|ref|NP_962021.1| enoyl-CoA hydratase [Mycobacterium avium subsp. paratuberculosis K-10] gi|81413435|sp|Q73VC7|ECH17_MYCPA RecName: Full=Probable enoyl-CoA hydratase echA17 gi|41398005|gb|AAS05635.1| EchA17 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 257 Score = 36.1 bits (81), Expect = 6.7, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 18/35 (51%) Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 + GR + EA +GLID + ++V+ + A Sbjct: 167 VFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWA 201 >gi|297572087|ref|YP_003697861.1| peptidase S14 ClpP [Arcanobacterium haemolyticum DSM 20595] gi|296932434|gb|ADH93242.1| peptidase S14 ClpP [Arcanobacterium haemolyticum DSM 20595] Length = 277 Score = 35.7 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 26/209 (12%), Positives = 59/209 (28%), Gaps = 37/209 (17%) Query: 26 SWSSHVEDNSPHVARIAIRGQIED----SQELIERIERISRDDSATALIVSLSSPGGSAY 81 + +++ + I G I + ++ + + + V ++SPGG Sbjct: 11 APNNNDPAGDDTRRVLRINGVIAEESWFDDDITPALFASELAAGSGDVTVWINSPGGDVV 70 Query: 82 AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYV 141 A I+ + + V + +AASA +I+ A ++ + S++ Sbjct: 71 AAAQIYNML--IDYPGHVKVCIDGIAASAASVIAMAGEVVAMSPVSMLMIHNPATLAVGD 128 Query: 142 KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 L ++ ++ + + + Sbjct: 129 AEELGRVID------------------------------MLAAVKESIINAYELKTGMSR 158 Query: 202 DKTLVLSDGRIWT-GAEAKKVGLIDVVGG 229 K L D W A +G D Sbjct: 159 AKLARLMDQETWMDARAAIAMGFADDYLT 187 >gi|281487003|gb|ADA71053.1| putative capsid protein [Wolbachia phage WO] Length = 118 Score = 35.7 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y FV+L++ +R + +K G + G +A ++G+ D V E + + V + Sbjct: 13 YEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGVADGVTTFFEFINNHKSRSVSMT 71 Query: 246 IRKIKDWNPPK 256 ++ + Sbjct: 72 TNELTEEGYEN 82 >gi|78212385|ref|YP_381164.1| ATP-dependent Clp protease-like protein [Synechococcus sp. CC9605] gi|78196844|gb|ABB34609.1| Endopeptidase Clp [Synechococcus sp. CC9605] Length = 225 Score = 35.7 bits (80), Expect = 7.0, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 22/186 (11%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 I+ ++ +I ++ + D+ + ++S G S Y+GEAI + I + Sbjct: 52 IDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYSGEAIGFETEAFA-----ICDTLRY 106 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + I + AA G+ G P L + + Sbjct: 107 VKPPVHTICIGQAMGTAAVILSAGTKGQRAALPNSSIVLHQPRSGARG------------ 154 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLID 225 +Q+ V + + ++S + ++ SD + T +A + GLID Sbjct: 155 ----QATDIQIRAKEVLHNKQAMLEILSTNTGRSVEELSKDSDRMSYLTPQQAVEYGLID 210 Query: 226 VVGGQE 231 V Sbjct: 211 RVLSSR 216 >gi|159129874|gb|EDP54988.1| enoyl-CoA hydratase/isomerase family protein [Aspergillus fumigatus A1163] Length = 288 Score = 35.7 bits (80), Expect = 7.1, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 7/92 (7%) Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG-------VDQSIRKIKDWNPPKN 257 ++ + R + G ++ VGL+D VGG EE Q + G K + + + Sbjct: 188 DLILEARRFAGPQSVAVGLVDGVGGLEETLQLIRERGLQTKAATGIYGTMKEEMYRHTLD 247 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 NL+ +E+ ++ ++ + A Sbjct: 248 ILDNHAGNLAWREQVEEKKGTREEAALRAVEA 279 >gi|294780291|ref|ZP_06745660.1| Clp protease [Enterococcus faecalis PC1.1] gi|294452555|gb|EFG20988.1| Clp protease [Enterococcus faecalis PC1.1] Length = 239 Score = 35.7 bits (80), Expect = 7.1, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 65/195 (33%), Gaps = 15/195 (7%) Query: 40 RIAIRGQIE----DSQELIER--IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 + + G I ++I+ I D + + L+SPGG + G I+ ++ Sbjct: 21 VLTLSGNIRKKYWSDDDVIDAKSIRETL-DGVTDDITIKLNSPGGDVFEGVEIYNYLKDH 79 Query: 94 KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIK 153 ++ V +AASA I A++ + + V K + K +++ Sbjct: 80 PSKVTVEV--TGVAASAATFILSAADEAIMNVGTSVMIHEASTFTWGNKQDIQKTLNALE 137 Query: 154 SVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW-----FVRLVSESRNIPYDKTLVLS 208 ++ S + + + M++ + F V ++ + Sbjct: 138 TIDDSILSIYSQKTGQTTDQLETWMKEEKWFTAEEAVEYGFATEVKKNTEKNSTDSKENI 197 Query: 209 DGRIWTG-AEAKKVG 222 + AEA + Sbjct: 198 AEMVKNAVAEAMSLN 212 >gi|126442937|ref|YP_001061915.1| NfeD family protein [Burkholderia pseudomallei 668] gi|126222428|gb|ABN85933.1| NfeD family protein [Burkholderia pseudomallei 668] Length = 503 Score = 35.7 bits (80), Expect = 7.2, Method: Composition-based stats. Identities = 32/239 (13%), Positives = 76/239 (31%), Gaps = 15/239 (6%) Query: 7 KIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI--EDSQELIERIERISRDD 64 ++ V++ L+ + + +P + I + G I + ++ +ER +R+ Sbjct: 18 RLARAAVLIGLLLACAAAAAAGAAAAARAP-IVVIPVAGAIGPASADFVVRGLERAAREH 76 Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVA 123 + A++ L +PGG + I +AI + AASAG I AS++ Sbjct: 77 APLAIV-QLDTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARAASAGTYIVYASHVAAM 135 Query: 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 A + +G+ + + A + + + + Sbjct: 136 APGTNLGAASPVQLGIGGQAPAGGRREP--------AGAPGAAGAGATDTESTETRKALH 187 Query: 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 + + L + + +A ++D++ + L Sbjct: 188 DAAAYIRGLAQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLAN--DPADLAAKLDG 244 >gi|238231330|dbj|BAH60842.1| L-arabinose isomerase [Corynebacterium glutamicum] Length = 503 Score = 35.7 bits (80), Expect = 7.3, Method: Composition-based stats. Identities = 24/246 (9%), Positives = 71/246 (28%), Gaps = 11/246 (4%) Query: 46 QIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGE---AIFRAIQKVKNRKPVITE 102 + +S +++ + S +D+ +I + + + A+ + + + + Sbjct: 55 VLTNSDAIVKAMVEASANDNVIGVITWMHTFSPAKMWIRGLNALRKPLLHLHTQANEQLP 114 Query: 103 VHEMAASAGYLISCAS-NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 + L A + + +G V + + K + + + Sbjct: 115 WSSIDMDFMNLNQAAHGDREFGYILTRMGIPRVSVVGHTTEERVGKRIGTWVRAAAGWNE 174 Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221 A+ + D + VS + D + + +A+ Sbjct: 175 AQHLTMVRFGDNMRDVAVTEGDKTEAEIRFGVSVNTWGVNDLVAEVENVT-----DAQVD 229 Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQ 281 LI+ E+ +L +S ++ + L+ + + + L Sbjct: 230 ALINEYEDIYEIEAALAK--GGESHDALRYATKQEVAIRTILERENAGAFTDTFEDLGGL 287 Query: 282 TKVQGL 287 ++ G Sbjct: 288 RQLPGF 293 >gi|52145326|gb|AAU29367.1| putative capsid protein [Wolbachia phage WO] Length = 118 Score = 35.7 bits (80), Expect = 7.3, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y F++L++ +R + +K G + G +A ++G+ D V E + + V + Sbjct: 13 YEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGVADGVTTFFEFINNHKSRSVSMT 71 Query: 246 IRKIKDWNPPK 256 ++ + Sbjct: 72 TNELTEEGYEN 82 >gi|71002272|ref|XP_755817.1| enoyl-CoA hydratase/isomerase family protein [Aspergillus fumigatus Af293] gi|66853455|gb|EAL93779.1| enoyl-CoA hydratase/isomerase family protein [Aspergillus fumigatus Af293] Length = 288 Score = 35.7 bits (80), Expect = 7.3, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 7/92 (7%) Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG-------VDQSIRKIKDWNPPKN 257 ++ + R + G ++ VGL+D VGG EE Q + G K + + + Sbjct: 188 DLILEARRFAGPQSVAVGLVDGVGGLEETLQLIRERGLQTKAATGIYGTMKEEMYRHTLD 247 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 NL+ +E+ ++ ++ + A Sbjct: 248 ILDNHAGNLAWREQVEEKKGTREEAALRAVEA 279 >gi|52145324|gb|AAU29366.1| putative capsid protein [Wolbachia phage WO] Length = 118 Score = 35.7 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y F++L++ +R + +K G + G +A ++G+ D V E + + V + Sbjct: 13 YEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGVADGVTTFFEFINNHKSRSVSMT 71 Query: 246 IRKIKDWNPPK 256 ++ + Sbjct: 72 TNELTEEGYEN 82 >gi|170077810|ref|YP_001734448.1| ATP-dependent Clp protease-like protein [Synechococcus sp. PCC 7002] gi|169885479|gb|ACA99192.1| Clp protease [Synechococcus sp. PCC 7002] Length = 228 Score = 35.7 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 61/176 (34%), Gaps = 22/176 (12%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 +I ++ + DD + + ++S G S Y G++I + I + + Sbjct: 60 IIAQLLFLQFDDPDKPIYMYINSTGTSWYGGDSIGFETEAFA-----ICDTLNYITPPVH 114 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 I + AA G+ G P+ L + + Sbjct: 115 TICLGQAMGTAAMILAAGTKGCRASLPHSTIILHQARQGAQG----------------QA 158 Query: 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 +Q+ V + ++++S+ P +K +D + T +A + G+ID V Sbjct: 159 SDIQIRAKEVIENKRTILQMMSKYTGQPLEKLEKDTDRMFYMTPQQALEYGIIDKV 214 >gi|124267844|ref|YP_001021848.1| 3-hydroxybutyryl-CoA dehydratase [Methylibium petroleiphilum PM1] gi|124260619|gb|ABM95613.1| 3-hydroxybutyryl-CoA dehydratase [Methylibium petroleiphilum PM1] Length = 269 Score = 35.7 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 13/103 (12%), Positives = 31/103 (30%), Gaps = 7/103 (6%) Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 RL+ R + GRI A A ++GL+ + ++ + + + + Sbjct: 150 QRLSRLIGAGR-----AIEFILRGRIVEPAVALEMGLVHELA--DDALRRAQQIAHEMVL 202 Query: 247 RKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 K + + L + ++ G + Sbjct: 203 TPPFAMAMAKRAVYEGSDTSLAAGLKLEGERFLETMLSDGSVS 245 >gi|19921018|ref|NP_609323.1| CG4594 [Drosophila melanogaster] gi|7297575|gb|AAF52829.1| CG4594 [Drosophila melanogaster] gi|16769162|gb|AAL28800.1| LD18769p [Drosophila melanogaster] gi|220942742|gb|ACL83914.1| CG4594-PA [synthetic construct] gi|220952946|gb|ACL89016.1| CG4594-PA [synthetic construct] Length = 280 Score = 35.7 bits (80), Expect = 7.5, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQS 236 L+ GR++T EA +VGLID + EE + Sbjct: 178 AERALTQGRMFTTQEAFEVGLIDEIASSKEEALEK 212 >gi|11467286|ref|NP_043143.1| ATP-dependent Clp protease proteolytic subunit [Cyanophora paradoxa] gi|11467404|ref|NP_043261.1| ATP-dependent Clp protease proteolytic subunit [Cyanophora paradoxa] gi|3023515|sp|Q36863|CLPP1_CYAPA RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|1016087|gb|AAA81174.1| ClpP1 protease subnit [Cyanophora paradoxa] gi|1016205|gb|AAA81292.1| subunit of ClpP protease [Cyanophora paradoxa] Length = 194 Score = 35.7 bits (80), Expect = 7.5, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 55/177 (31%), Gaps = 31/177 (17%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAG 111 ++ ++ + +DS + + ++SPGGS AG +++ IQ + I + A Sbjct: 43 SIVGQLLYLENEDSTKDIRLFINSPGGSVTAGLSVYDTIQNLSVDVSTICFGLAASMGAV 102 Query: 112 YLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 L + N A +S + L + LD Sbjct: 103 LLAAGVENKRFAFASSRIMIHQPLSKVEAPWSHLD------------------------- 137 Query: 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVV 227 + + ++S + + EAK+ G+ID + Sbjct: 138 -----IQIRNGAYFKNLLNNILSFHTKQELKQIETDTERDFFLSATEAKQYGIIDHI 189 >gi|6723199|dbj|BAA89608.1| capsid protein [Bacteriophage WO] Length = 123 Score = 35.7 bits (80), Expect = 7.5, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 Y FV+L++ +R + +K G + G +A ++GL D V E Sbjct: 13 YEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTAFFEFINK 62 >gi|288800853|ref|ZP_06406310.1| Clp protease [Prevotella sp. oral taxon 299 str. F0039] gi|288332314|gb|EFC70795.1| Clp protease [Prevotella sp. oral taxon 299 str. F0039] Length = 222 Score = 35.7 bits (80), Expect = 7.5, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 57/190 (30%), Gaps = 31/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + I+D + L ++ + DS + + ++SPGGS AG I+ +Q + + Sbjct: 57 IIFLGTPIDDYTANTLQAQLLYLDSVDSGKDISIYINSPGGSVTAGLGIYDTMQFITSDV 116 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L+S A A V L D + + +K Sbjct: 117 ATICTGMAASMAAVLLVSGAEGKRSALPHGRVMIHQPLGGVQGQAS--DIEIEAREIIKM 174 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 P + T E Sbjct: 175 KKELYTIISDHSHTPFDKVWQDSDRNYWM---------------------------TAEE 207 Query: 218 AKKVGLIDVV 227 AK+ G+ID V Sbjct: 208 AKEYGMIDTV 217 >gi|169351385|ref|ZP_02868323.1| hypothetical protein CLOSPI_02165 [Clostridium spiroforme DSM 1552] gi|169291607|gb|EDS73740.1| hypothetical protein CLOSPI_02165 [Clostridium spiroforme DSM 1552] Length = 190 Score = 35.7 bits (80), Expect = 7.7, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 43/101 (42%), Gaps = 2/101 (1%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G I+D + ++ ++ + D++ + + ++SPGGS AG AI+ + +K Sbjct: 29 IILLTGTIDDKMASSIVGQLLYLESIDNSADIYMYINSPGGSINAGMAIYDTMNFIKCDV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138 I + +A L + + S + L + Sbjct: 89 STIVIGMAASMAAFLLSAGTKGKRCSLPNSEIMIHQPLGAF 129 >gi|326668469|ref|XP_688205.4| PREDICTED: xin actin-binding repeat-containing protein 2 [Danio rerio] Length = 3315 Score = 35.7 bits (80), Expect = 7.8, Method: Composition-based stats. Identities = 15/209 (7%), Positives = 54/209 (25%), Gaps = 11/209 (5%) Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNR---KPVITEVHEMAASAGYLISCASNIIVAAET 126 I + E + ++ + K + M + A++ Sbjct: 1068 IFENQTSDIMTSTSEETMQKLKCHQTEDIQKGNVVNCTWMFENQSIDSIKANSEDFKESR 1127 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 ++ G + + + +SS + +++ Sbjct: 1128 TVTDIQG--GNVDKGRFIFETYSLDKIQEESSETEISKLQSIIHKEIEKGDVKNYTMMFE 1185 Query: 187 HWFVRLVSESRNIPYDKT----LVLSDGRIWTGAEAKKVGLIDVVGGQEE--VWQSLYAL 240 + + + ++ T + G + + ID + +E V +++ Sbjct: 1186 TQPLYAIKDKEGHYHEVTTVTKEEILRGDVVGARWLFETKPIDSIKDTDEVYVIKAVTQE 1245 Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 + + W +++ ++ Sbjct: 1246 DIQKGDVSTARWRFETQPLDEIAEDMKVA 1274 >gi|218296504|ref|ZP_03497232.1| Enoyl-CoA hydratase/isomerase [Thermus aquaticus Y51MC23] gi|218243046|gb|EED09578.1| Enoyl-CoA hydratase/isomerase [Thermus aquaticus Y51MC23] Length = 271 Score = 35.7 bits (80), Expect = 7.8, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 6/82 (7%) Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG-VDQSIRKIKDWNP 254 R ++ GR T EA +GL++ VG E+ + L I Sbjct: 167 GRGR---ALDLIFTGRHVTAEEALSMGLVNRVG--EDALEEARKLAEKILKNAPIALALA 221 Query: 255 PKNYWFCDLKNLSISSLLEDTI 276 ++ + +L+ + +E + Sbjct: 222 KESVVRGEGLDLAEALEIEADL 243 >gi|251797708|ref|YP_003012439.1| binding-protein-dependent transporters inner membrane component [Paenibacillus sp. JDR-2] gi|247545334|gb|ACT02353.1| binding-protein-dependent transport systems inner membrane component [Paenibacillus sp. JDR-2] Length = 332 Score = 35.7 bits (80), Expect = 7.8, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 70/224 (31%), Gaps = 19/224 (8%) Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60 +++ LK+I ++ +++ V Y + S + A ++ G++ +++ + Sbjct: 2 LQYTLKRILLAIPVVFFISVIVFYIIQLPPGDYVSNYAAEASVAGEVFTQEDMAAMRADL 61 Query: 61 SRDDS--------ATALIVSLS---SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 D +++ S + + I + + + ++T + + Sbjct: 62 GLDRPVYEQYFIWVKDIVLHGDFGFSFNYNKPVLDVIKQYM-GLTLTVSLVTMAFQYLVA 120 Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV-------KSSPMKA 162 I CA A + G + P+ + + +S S+ Sbjct: 121 IPIGIYCAVKQYSAGDYFFSGLSFLGMATPHFLMAVILMFLSYTWFGDPLLGLFSAEYVN 180 Query: 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 P + A M+ V+ L+ R D+ Sbjct: 181 APWSMDKAIDLAKHMVIPVIVIGLSGTADLIRVMRGQMLDELNK 224 >gi|320449637|ref|YP_004201733.1| 3-hydroxybutyryl-CoA dehydratase [Thermus scotoductus SA-01] gi|320149806|gb|ADW21184.1| 3-hydroxybutyryl-CoA dehydratase [Thermus scotoductus SA-01] Length = 273 Score = 35.7 bits (80), Expect = 7.9, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 6/82 (7%) Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG-VDQSIRKIKDWNP 254 R ++ GR + EA +GL++ VG E+ + L I Sbjct: 169 GRGR---ALDLIFTGRHVSAEEALSLGLVNRVG--EDALEEAKKLAQKIMKNAPIALALA 223 Query: 255 PKNYWFCDLKNLSISSLLEDTI 276 ++ + +L+ + +E + Sbjct: 224 KESVVRGEGLDLAEALEIEADL 245 >gi|291295936|ref|YP_003507334.1| hypothetical protein Mrub_1552 [Meiothermus ruber DSM 1279] gi|290470895|gb|ADD28314.1| protein of unknown function DUF114 [Meiothermus ruber DSM 1279] Length = 279 Score = 35.7 bits (80), Expect = 7.9, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 67/183 (36%), Gaps = 21/183 (11%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 I+DS++++ I D S + + L +PGG A E I A+ K + V V Sbjct: 68 IDDSEQVLRAIRM--TDQSVP-IDLILHTPGGLVLAAEQIAEALLKHPAK--VTVFVPHY 122 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 A S G LI+ A++ IV +++G + L + ++ P+ Sbjct: 123 AMSGGTLIALAADEIVMDPNAVLGPVDPQLGQYPAASIL-------RVLEQKPIAEIDDQ 175 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220 + A + + V + + E + L WT EA+ Sbjct: 176 TLIMADVARKALFQVKRTVAGLLRKHFDE---QKSQELAELLSQGTWTHDYPISVEEARS 232 Query: 221 VGL 223 +GL Sbjct: 233 MGL 235 >gi|326693258|ref|ZP_08230263.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc argentinum KCTC 3773] Length = 200 Score = 35.7 bits (80), Expect = 8.0, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 58/193 (30%), Gaps = 31/193 (16%) Query: 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + ++G+IEDS ++ ++ + D + + ++SPGGS AG +I + +K Sbjct: 27 IVLVQGEIEDSMATSIVAQLLFLEAQDPTKEISMYINSPGGSVTAGLSITDTMNFIKAPV 86 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + S + + D ++ + Sbjct: 87 TTIVMGLAASMGTIIASSGEKGHRFMLPNAEYLIHQPMGGAAGGTQQTDMAIIAEQL--- 143 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGA 216 + R+++++ + ++ W + Sbjct: 144 -------------------------TKTRAKLNRILADASGKDLETIAHDTERDYWMSAE 178 Query: 217 EAKKVGLIDVVGG 229 E + G ID + Sbjct: 179 ETLEYGFIDGILT 191 >gi|253796882|gb|ACT35696.1| capsid protein [Wolbachia phage WO] Length = 119 Score = 35.7 bits (80), Expect = 8.0, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 + ++++ +Q +D Y FV+L++ +R + +K G + G A ++GL D + Sbjct: 1 MTSESLESLQKEIDRLYEMFVQLIARNRGLSIEKIRSTEAGLYF-GERAIEIGLADGI 57 >gi|99082633|ref|YP_614787.1| carnitinyl-CoA dehydratase [Ruegeria sp. TM1040] gi|99038913|gb|ABF65525.1| Enoyl-CoA hydratase/isomerase [Ruegeria sp. TM1040] Length = 262 Score = 35.7 bits (80), Expect = 8.1, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 20/48 (41%) Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 R + +L GR + EA + GL++ + +++ + L Sbjct: 149 KRIPYHVAMELLLTGRWFDAEEAHRWGLVNEIVAADQLMDRAWELARL 196 >gi|315230791|ref|YP_004071227.1| membrane-bound ClpP-class protease [Thermococcus barophilus MP] gi|315183819|gb|ADT84004.1| membrane-bound ClpP-class protease [Thermococcus barophilus MP] Length = 449 Score = 35.7 bits (80), Expect = 8.1, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 3/112 (2%) Query: 18 VTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSS 75 V L V F + + V I+GQI + I R +A A+I+ L + Sbjct: 4 VLLIVALFILLTPALAQAKTVYVAQIKGQITSYTYDQFDRYISEAER-ANANAIIIELDT 62 Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 PGG A + I + IQ K + A++ + ++A Sbjct: 63 PGGRGDAMQNIIQRIQTAKVPVIIYVYPSGAMAASAGTYIALGSHLIAMAPG 114 >gi|240278049|gb|EER41556.1| enoyl-CoA hydratase/isomerase [Ajellomyces capsulatus H143] gi|325096114|gb|EGC49424.1| enoyl-CoA hydratase/isomerase [Ajellomyces capsulatus H88] Length = 241 Score = 35.7 bits (80), Expect = 8.3, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 11/184 (5%) Query: 60 ISRDDSATALIVSLS-SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 D + + + S + I RA++ V+ + + G + A Sbjct: 21 AKGDPQIYLITLRKAPENRISTIFAQEIIRALRDVERMVEAAGKDEQ-----GGSVGAAV 75 Query: 119 NIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 I + L YP+ L ++ + + A + +N + Sbjct: 76 IIRGEGNKFWSTLLHTLLDYPFPTIAL----LNGHTFGGACPLALAHDYRVMNSRRGFFS 131 Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 V+ H+ + + L + WTG EA + G++D + E++ + Sbjct: 132 MPPVNIGVHFPGIGYLARLKLRPEIAREMLLEAHKWTGKEALEDGIVDQIAEPEDMLDAA 191 Query: 238 YALG 241 + Sbjct: 192 IEVA 195 >gi|88763674|gb|ABD49507.1| capsid protein [Wolbachia phage WO] Length = 117 Score = 35.7 bits (80), Expect = 8.3, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 FV+L++ +RN + G + G A +VGL D + E Sbjct: 3 EMFVQLIARNRNFSIEVIKSTEAGLHF-GENAIEVGLADGITTFCEFINK 51 >gi|138895477|ref|YP_001125930.1| enoyl-CoA hydratase [Geobacillus thermodenitrificans NG80-2] gi|196249063|ref|ZP_03147762.1| Enoyl-CoA hydratase/isomerase [Geobacillus sp. G11MC16] gi|134266990|gb|ABO67185.1| Enoyl-CoA hydratase/isomerase family protein [Geobacillus thermodenitrificans NG80-2] gi|196211292|gb|EDY06052.1| Enoyl-CoA hydratase/isomerase [Geobacillus sp. G11MC16] Length = 254 Score = 35.7 bits (80), Expect = 8.4, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 57/182 (31%), Gaps = 8/182 (4%) Query: 67 TALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAET 126 A++ +A + + + ++ K T + + + + + Sbjct: 12 KAILELNRPQALNAMDMQMLTELVDALRKIKESDTSIVVIRGKGRGFSAGGDIKTMLSVD 71 Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 V+ + L + S P F+ + + + + ++ Sbjct: 72 DPSQFRTVMKTIQEMIMLLYTMPKITVSFIHGPAAGLGFSFALASDYLIATNEARLAMNF 131 Query: 187 -------HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE-VWQSLY 238 + R ++ +G+ + EAK++GL+D+V EE Q L Sbjct: 132 IGVGLVPDGGGHFLLAQRVGTPKAKQIIWEGKTMSADEAKQLGLVDLVVDSEEQAEQWLA 191 Query: 239 AL 240 +L Sbjct: 192 SL 193 >gi|330837420|ref|YP_004412061.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta coccoides DSM 17374] gi|329749323|gb|AEC02679.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta coccoides DSM 17374] Length = 246 Score = 35.7 bits (80), Expect = 8.5, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 7/165 (4%) Query: 41 IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 I + G+I+ + LI ++ + +D + + ++SPGG AG AI+ I+ V Sbjct: 80 ILLSGEIDKECADRLIRQLLVMEAEDGDAPVYLYINSPGGDVDAGYAIYDMIRFVSCPIT 139 Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158 +I +A+A L+S ++ V S L V ++ I+ +++ Sbjct: 140 IIGMGLVASAAALILLSVPADRRVGLPDSTYLIHQPLSGMKGVATDIEIHARQIEKLRAK 199 Query: 159 -----PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 S D ++ + + + SR Sbjct: 200 LDGVIAAATGKSVEEVAEDTERDHWLDAGEARDYGLISRIVSSRK 244 >gi|303320125|ref|XP_003070062.1| 3,2-trans-enoyl-CoA isomerase, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] gi|240109748|gb|EER27917.1| 3,2-trans-enoyl-CoA isomerase, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] Length = 267 Score = 35.7 bits (80), Expect = 8.5, Method: Composition-based stats. Identities = 15/122 (12%), Positives = 36/122 (29%), Gaps = 1/122 (0%) Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221 + + +V + P +++ GR + EA Sbjct: 123 HDYRFQNPTRGYLCLNEVHFGAWLPAPMASIVKQKVANPAAVRDLITAGRRFDAKEALSA 182 Query: 222 GLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 G+ID GG E + + + + K+ + Y S ++ + ++ Sbjct: 183 GIIDATGGIEVALKFIEDRSLVKLGQTKVYASLKEEIYKETLKTLESYEENEKERLGRLQ 242 Query: 281 QT 282 + Sbjct: 243 ER 244 >gi|218961379|ref|YP_001741154.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Candidatus Cloacamonas acidaminovorans] gi|167730036|emb|CAO80948.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases [Candidatus Cloacamonas acidaminovorans] Length = 194 Score = 35.7 bits (80), Expect = 8.5, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 61/191 (31%), Gaps = 33/191 (17%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 + + G IED + ++ ++ + +D + + ++SPGG AG AI+ +Q +K R Sbjct: 29 IVFVGGVIEDNLANTVVAQLLHLEGEDPERDIYMYINSPGGIISAGLAIYDTMQYIKPRV 88 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L + A A S + + ++ Sbjct: 89 STICIGQAASMAAVLLAAGAPGKRSALPNSRIMIHQPMGGAQGQATDIE----------- 137 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGA 216 + + ++ + +K + Sbjct: 138 -------------------IQAKEILYLRGRMNEILHKHSGQSIEKIMEDTERNYFMSAE 178 Query: 217 EAKKVGLIDVV 227 EA + G+ID V Sbjct: 179 EAMEYGIIDEV 189 >gi|160946055|ref|ZP_02093275.1| hypothetical protein PEPMIC_00010 [Parvimonas micra ATCC 33270] gi|158447859|gb|EDP24854.1| hypothetical protein PEPMIC_00010 [Parvimonas micra ATCC 33270] Length = 170 Score = 35.7 bits (80), Expect = 8.5, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 21/79 (26%), Gaps = 1/79 (1%) Query: 160 MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAEA 218 + + Q + L + + L D W + EA Sbjct: 51 HNPWSFAYGNASDFRKQADNLDHIADSIKQTYLEKAGDKLDLETITQLMDAETWMSAQEA 110 Query: 219 KKVGLIDVVGGQEEVWQSL 237 + GL D V + S+ Sbjct: 111 FEYGLCDQVLSANQAAASI 129 >gi|83950950|ref|ZP_00959683.1| hypothetical protein ISM_07610 [Roseovarius nubinhibens ISM] gi|83838849|gb|EAP78145.1| hypothetical protein ISM_07610 [Roseovarius nubinhibens ISM] Length = 798 Score = 35.7 bits (80), Expect = 8.7, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 1/76 (1%) Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSIS 269 G+ EA + L D G ++ ++ I+ ++ +++ S Sbjct: 328 GKRLEALEALQKQL-DEAGTLKDALAEAVTNAGVKTKTIIETYSDLEDFSSLIETAKSAR 386 Query: 270 SLLEDTIPLMKQTKVQ 285 L D + +K Sbjct: 387 LNLRDYLKALKSAFED 402 >gi|269793010|ref|YP_003317914.1| hypothetical protein Taci_1401 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100645|gb|ACZ19632.1| protein of unknown function DUF114 [Thermanaerovibrio acidaminovorans DSM 6589] Length = 277 Score = 35.7 bits (80), Expect = 8.9, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 54/183 (29%), Gaps = 20/183 (10%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 IEDS+E++ I +I +PGG A E I A++K K + H Sbjct: 65 IEDSEEVLRFIRMTPDHVPIDMVI---HTPGGLLLAAEQIAEALRKHP-SKVTVFVPHYA 120 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + A I++ L L Q+P ++ V + Sbjct: 121 MSGGTLIALAADEIVMDRHAVLGPVDPQLGQWPAASIIKAVEQKPVEEVDDHTLIMADVA 180 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTG------AEAKK 220 + + + + + D WT EA+ Sbjct: 181 RKAMRQTEDFVRRLLKSNGMEE----------ERADALAKALTDGRWTHDYPINIDEARS 230 Query: 221 VGL 223 +GL Sbjct: 231 LGL 233 >gi|254512845|ref|ZP_05124911.1| carnitinyl-CoA dehydratase (Crotonobetainyl-CoAhydratase) [Rhodobacteraceae bacterium KLH11] gi|221532844|gb|EEE35839.1| carnitinyl-CoA dehydratase (Crotonobetainyl-CoAhydratase) [Rhodobacteraceae bacterium KLH11] Length = 259 Score = 35.7 bits (80), Expect = 8.9, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 19/48 (39%) Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 R + +L GR + EA + GL++ + +++ L Sbjct: 146 KRIPYHIAMELLLTGRWFDAEEANRWGLVNEIIAADQLMDRARELARL 193 >gi|313900686|ref|ZP_07834179.1| endopeptidase Clp [Clostridium sp. HGF2] gi|312954748|gb|EFR36423.1| endopeptidase Clp [Clostridium sp. HGF2] Length = 189 Score = 35.4 bits (79), Expect = 9.0, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 32/190 (16%) Query: 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK 97 I + G+I+D S + ++ +S S + + ++SPGGS AG AI+ ++ ++ Sbjct: 29 IIILTGEIDDAMSSSICAQLLYLSSISS-EPIQMYINSPGGSVSAGLAIYDIMKYIRCDV 87 Query: 98 PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKS 157 I + +A L + A S + + + ++ Sbjct: 88 STICMGICASMAAVLLSAGTQGKRSALSNSEIMIHQPMG-------GMQGQAKDMEIAAL 140 Query: 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAE 217 K + +S ++ Q + + + E Sbjct: 141 HIQKLKERLYSILSENTRQSNETLRRDCDRDYYMD----------------------AKE 178 Query: 218 AKKVGLIDVV 227 A GLID + Sbjct: 179 ALSYGLIDAI 188 >gi|220925287|ref|YP_002500589.1| NAD-binding 3-hydroxyacyl-CoA dehydrogenase [Methylobacterium nodulans ORS 2060] gi|219949894|gb|ACL60286.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Methylobacterium nodulans ORS 2060] Length = 692 Score = 35.4 bits (79), Expect = 9.1, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 6/92 (6%) Query: 200 PYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS--LYALGVDQSIRKIKDWNPPKN 257 P V+ G +A +GL+D + ++ + +A V R + ++ Sbjct: 149 PRKALEVIVGGAPIGAKQAAAMGLVDEIAPEDSLRAHAVAFAERVVAEGRPLTRIRDRED 208 Query: 258 YWFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289 + L D +++G A Sbjct: 209 RLAEGRDDPG----LFDAFRRENARRLRGFEA 236 >gi|319892557|ref|YP_004149432.1| Prophage Clp protease-like protein [Staphylococcus pseudintermedius HKU10-03] gi|317162253|gb|ADV05796.1| Prophage Clp protease-like protein [Staphylococcus pseudintermedius HKU10-03] Length = 240 Score = 35.4 bits (79), Expect = 9.1, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 68/230 (29%), Gaps = 54/230 (23%) Query: 41 IAIRGQIEDSQE----------------LIERIERISRDDSATALIVSLSSPGGSAYAGE 84 I I+G I + + +I+ + + D + V ++S GG ++G Sbjct: 3 INIKGAIVSNDDKWLYEIFGMEHTAPKDVIDALPKNKED-----IEVIINSGGGDVFSGS 57 Query: 85 AIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 I+ A+++ + + + S + + + + P Sbjct: 58 EIYTALKEYQGKV--------------------IVKVYGVAASAASVVAMAGDHIEMSPT 97 Query: 145 LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 + + ++ + S ++ + V + + ++ Sbjct: 98 AQMMIHNASTLAYGDNRNMNSASKMLSSTDKGIANAYV------------KKTGMSEEEI 145 Query: 205 LVLSDGRIW-TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 L L + W EA + G D + + + + G S K Sbjct: 146 LNLMNDETWMNAQEAVEKGFADAKMFDDAAPKIVASFGQVISEDAKKRIT 195 >gi|88763678|gb|ABD49509.1| capsid protein [Wolbachia phage WO] Length = 121 Score = 35.4 bits (79), Expect = 9.1, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 Y FV+L++ +R + +K G + G +A ++GL D V E Sbjct: 5 YEMFVQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGLADGVTTFFE 50 >gi|212639180|ref|YP_002315700.1| enoyl-CoA hydratase [Anoxybacillus flavithermus WK1] gi|212560660|gb|ACJ33715.1| Enoyl-CoA hydratase/carnithine racemase [Anoxybacillus flavithermus WK1] Length = 268 Score = 35.4 bits (79), Expect = 9.4, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 20/33 (60%) Query: 207 LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 + +G++ + EA +VGL+D +G ++ + + Sbjct: 174 IWEGKVMSAQEAYEVGLVDEIGDEQAIQHKVNE 206 >gi|194746259|ref|XP_001955598.1| GF16168 [Drosophila ananassae] gi|190628635|gb|EDV44159.1| GF16168 [Drosophila ananassae] Length = 563 Score = 35.4 bits (79), Expect = 9.4, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 47/162 (29%), Gaps = 11/162 (6%) Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 + + K + E+ + + + Sbjct: 49 HQNNHAYQFMDTGTSILSVFRGKGAWTAREEIRLLDAIEQYGFGNWEDISKHIETKSAED 108 Query: 199 IPYDKTLVLSDGRI----WTGAEAKKVGLIDVVGGQE------EVWQSLYALGVDQSIRK 248 + +G I WT A++++ LID G + SL L ++ Sbjct: 109 AKEEYVNKFVNGTIGKATWTPAQSQRPRLIDHTGDDDAGPLGTSALASLPPLDINTDEAM 168 Query: 249 IKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAV 290 + P ++ + + + + L+ + + T+V + + Sbjct: 169 QLGYMPNRDSFEREY-DPTAEQLISNITLSSEDTEVDVMLKL 209 >gi|315221880|ref|ZP_07863792.1| Clp protease [Streptococcus anginosus F0211] gi|315189113|gb|EFU22816.1| Clp protease [Streptococcus anginosus F0211] Length = 227 Score = 35.4 bits (79), Expect = 9.6, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 11/181 (6%) Query: 41 IAIRGQIEDSQELIE---------RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 I I+G I + E +E I + L V ++S GG Y I+ ++ Sbjct: 4 IEIKGVIIPKSSIPEYKKDGREYTSLEDIKIPFPSEPLEVRINSSGGDVYTANEIYAKLR 63 Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 K + V +AASA +I+ A ++I +L+ V L + + Sbjct: 64 GHKGKVTVKIVG--LAASAASVIAMAGDVIEMNPIALMMIHNVSTLTYGNSQQLKRQIET 121 Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211 + + A K +MM+ S + L + + R Sbjct: 122 MDVANDALATAYQERTGLAKEKIKEMMERETWLSCDTAISLGFADKKMFVKDIDTTMVKR 181 Query: 212 I 212 I Sbjct: 182 I 182 >gi|313679166|ref|YP_004056905.1| hypothetical protein Ocepr_0270 [Oceanithermus profundus DSM 14977] gi|313151881|gb|ADR35732.1| hypothetical protein Ocepr_0270 [Oceanithermus profundus DSM 14977] Length = 281 Score = 35.4 bits (79), Expect = 9.6, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 61/183 (33%), Gaps = 21/183 (11%) Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 I+DS++++ I D + + L +PGG A E I A+++ K + H Sbjct: 71 IDDSEQVLRAIRM--TDKHVP-IDLILHTPGGLVLAAEQIAEALKRHPA-KVTVFVPHYA 126 Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 + + A I++ L L P +K ++ + Sbjct: 127 MSGGTLIALGADEIVMDENAVLGPVDPQLGNKPAASI--------VKVLEMKEIADIDDE 178 Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA------EAKK 220 + + + ++ V ++ + + R + L WT +A+ Sbjct: 179 TLILADVSKKALKQVKETVMGLLKNTIPDDR---VEDVASLLSQGTWTHDYPIDVAQARG 235 Query: 221 VGL 223 GL Sbjct: 236 FGL 238 >gi|88763690|gb|ABD49514.1| capsid protein [Wolbachia phage WO] Length = 122 Score = 35.4 bits (79), Expect = 9.6, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQS 245 Y F++L++ +R + +K G + G +A ++G+ D V E + + V + Sbjct: 10 YEMFLQLIARNRGLSIEKIRSTEAGLYF-GEKAVEIGVADGVTTFFEFINNHKSRSVSMT 68 Query: 246 IRKIKDWNPPK 256 ++ + Sbjct: 69 TNELTEEGYEN 79 >gi|229119089|ref|ZP_04248427.1| Integrase [Bacillus cereus Rock1-3] gi|228664373|gb|EEL19876.1| Integrase [Bacillus cereus Rock1-3] Length = 173 Score = 35.4 bits (79), Expect = 9.7, Method: Composition-based stats. Identities = 10/113 (8%), Positives = 33/113 (29%), Gaps = 2/113 (1%) Query: 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY 112 +++ +++ + + +++ + G Y + ++K + + + + + + Sbjct: 61 VLDTLKKARKKQNVKGILLHSN--QGFQYTSRQYNQLLKKYQMKASMSRKGNCWDNACIE 118 Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 S + V F + K SP K Sbjct: 119 NFFSHFKSECFHLYSFRKADEVKVAVRKYMHFYNYQRFQKKLNNLSPYKYRTQ 171 >gi|119183949|ref|XP_001242949.1| hypothetical protein CIMG_06845 [Coccidioides immitis RS] gi|320031897|gb|EFW13854.1| enoyl-CoA hydratase/isomerase [Coccidioides posadasii str. Silveira] Length = 267 Score = 35.4 bits (79), Expect = 9.8, Method: Composition-based stats. Identities = 15/122 (12%), Positives = 36/122 (29%), Gaps = 1/122 (0%) Query: 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKV 221 + + +V + P +++ GR + EA Sbjct: 123 HDYRFQNPTRGYLCLNEVHFGAWLPAPMASIVKQKVANPAAVRDLITAGRRFDAKEALSA 182 Query: 222 GLIDVVGGQEEVWQSLYALGVDQ-SIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMK 280 G+ID GG E + + + + K+ + Y S ++ + ++ Sbjct: 183 GIIDATGGIEVALKFIEDRSLVKLGQTKVYASLKEEIYKETLKTLESHEENEKERLGRLQ 242 Query: 281 QT 282 + Sbjct: 243 ER 244 >gi|254465576|ref|ZP_05078987.1| carnitinyl-CoA dehydratase [Rhodobacterales bacterium Y4I] gi|206686484|gb|EDZ46966.1| carnitinyl-CoA dehydratase [Rhodobacterales bacterium Y4I] Length = 265 Score = 35.4 bits (79), Expect = 9.8, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 20/48 (41%) Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 R + +L GR + EA + GL++ + +++ + L Sbjct: 152 KRIPYHIAMELLLTGRWFDAEEANRWGLVNEIVAADQLMDRAWELARL 199 >gi|38146281|gb|AAR11503.1| capsid protein [Wolbachia phage WO] Length = 117 Score = 35.4 bits (79), Expect = 9.9, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 V+ Y F++L++ +R + +K G + G A ++GL D + Sbjct: 1 DWKAYKEVERLYEMFLQLIARNRGLSIEKIRSTEAGLYF-GERAIEIGLADGI 52 >gi|146278618|ref|YP_001168777.1| peptidase S49 [Rhodobacter sphaeroides ATCC 17025] gi|145556859|gb|ABP71472.1| peptidase S49 [Rhodobacter sphaeroides ATCC 17025] Length = 327 Score = 35.4 bits (79), Expect = 9.9, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 76/215 (35%), Gaps = 15/215 (6%) Query: 39 ARIAIRGQIEDSQE-------------LIERIERISRDDSATALIVSLSSPGGSAYAGEA 85 A + +RG + + L E + ++ + A A+++ + SPGG EA Sbjct: 61 AVVPVRGILTPNMAQYERWFGWATYHGLAETLTHLAASEDAAAIVLEIDSPGGLVCGIEA 120 Query: 86 IFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 AI KPV V +AASA Y ++ ++ IV ++ GSIGV Sbjct: 121 AAEAIAAAAAVKPVHALVSPLAASAAYWLASQASEIVMTPGAVAGSIGVALTAAAHVQPG 180 Query: 146 DKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 + P ++ +Q D ++++H +R D Sbjct: 181 ANGAQIFEMSSRHARAKRPDASTKAGRAELQRSLDEAEAAFHAIPAAELAARLSVTDDPQ 240 Query: 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 + AE + GL D + + L A Sbjct: 241 D--GAATFRAAEVIRRGLADRTETRAAFYARLTAR 273 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.310 0.107 0.254 Lambda K H 0.267 0.0332 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,237,644,604 Number of Sequences: 14124377 Number of extensions: 32106907 Number of successful extensions: 292810 Number of sequences better than 10.0: 5019 Number of HSP's better than 10.0 without gapping: 3155 Number of HSP's successfully gapped in prelim test: 1864 Number of HSP's that attempted gapping in prelim test: 283289 Number of HSP's gapped (non-prelim): 6851 length of query: 293 length of database: 4,842,793,630 effective HSP length: 138 effective length of query: 155 effective length of database: 2,893,629,604 effective search space: 448512588620 effective search space used: 448512588620 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 80 (35.7 bits)